# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Trametes_cinnabarina-BN946/GCA_000765035.1_BN946_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Trametes_cinnabarina-BN946/GCA_000765035.1_BN946_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Trametes_cinnabarina-BN946/GCA_000765035.1_BN946_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       CDO68064.1  [L=58]
Description: hypothetical protein BN946_scf184347.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.4    7.7   8.1    1.4e+02    2.6   8.1    2.9  1  CBM_1     Fungal cellulose binding domain


Domain annotation for each model (and alignments):
>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   8.1    0.0078   1.4e+02       5      16 ..       5      23 ..       4      58 .] 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0078
       CBM_1  5 CGGig.......WtGpTtC 16
                CGG g       ++ pT C
  CDO68064.1  5 CGGRGwfkgshnYKSPTDC 23
                9****55555555666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 396.89
//
Query:       CDO68065.1  [L=653]
Description: hypothetical protein BN946_scf184347.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.7e-112  375.3   0.0   6.8e-111  371.5   0.0    2.2  1  Aconitase    Aconitase family (aconitate hydratase)
    9.2e-20   71.3   0.0    1.7e-19   70.5   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain
  ------ inclusion threshold ------
      0.012   14.4   0.0      0.018   13.7   0.0    1.2  1  DUF521       Protein of unknown function (DUF521)
       0.13   12.5   1.3        0.3   11.4   1.3    1.5  1  MIB_HERC2    Mib_herc2
       0.22   10.6   0.1       0.38    9.8   0.1    1.3  1  MCM          MCM P-loop domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.5   0.0  1.9e-114  6.8e-111      12     461 .]      49     470 ..      31     470 .. 0.89

  Alignments for each domain:
  == domain 1  score: 371.5 bits;  conditional E-value: 1.9e-114
   Aconitase  12 egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaakafgirvvppgqG 107
                  g +yv   p++v+++d tg+ + +  +  +++vr++++ + t+dh+v+++     s            +++     +y+ ++ +a+++gi+++p+g+G
  CDO68065.1  49 AG-DYVmirPEHVMTHDNTGPVISKFKSIGATRVRNPKQLVFTLDHDVQNK-----S-----------PKNL----AKYASIEAFARQHGIDFYPAGRG 126
                 33.444457***********98888778888999**************999.....2...........2344....559******************** PP

   Aconitase 108 IvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigklrkkgvvgkvvEffG 206
                 I Hqv +E+g+a+p ++ v++DSH++m+gg+G++++++ +++a+a +++ ++++++p++++v+l+Gkl +gvt kD+++a++g ++k++v + ++Ef+G
  CDO68065.1 127 IGHQVLVEEGYAFPHTLTVASDSHSNMYGGIGCVGTPIVRTDAAALWATGKTWWQVPRMIKVELKGKLAPGVTGKDVIVALCGYFNKDEVLNGAIEFVG 225
                 *************************************************************************************************** PP

   Aconitase 207 egvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgr...................eeaav.lveaydkaqalfelaadedaeydkvleldls 285
                 +g+++Ls+++r+TiaNM++E+GA +g+fpvd+ t+++ + + +                   +e++  + ++ d  +a  +l++d+da y++ l ldls
  CDO68065.1 226 DGISALSVDERLTIANMTTEWGALAGVFPVDDVTMNWYESALKrlefrtfstpassasipppPEHPRiNRRRLDDLRA-NNLKSDPDAAYTSHLVLDLS 323
                 **************************************9776658888888888877777754444433344444333.469***************** PP

   Aconitase 286 tlepsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGS 384
                 tl+p+v+gp++++ + pl                             + k++++++a++ SCTN++ +d+ aaa++++     g+kv+pgv+++va++S
  CDO68065.1 324 TLVPHVSGPNSVKVSHPL-PVL-------------------------ESKHIQIQKAYLLSCTNARASDIAAAAEVIK-----GHKVAPGVEFYVAAAS 391
                 ******************.222.........................346888*************************.....**************** PP

   Aconitase 385 evvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRq.gpntrayLaSPelvvaaAlaG 461
                 ++v++ +e+ G +e+L +aG++ + +gC++Cig   + l+ege+++s++NRN++gR+ +pn++ayLaSP++v+a+A++G
  CDO68065.1 392 SEVQQDAEKRGDWETLIAAGAKPLPSGCGPCIGlGVGLLQEGEVGISATNRNYKGRMgHPNAQAYLASPAVVAASAVKG 470
                 *********************************************************55******************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   4.7e-23   1.7e-19      73     129 ..     511     567 ..     494     569 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 4.7e-23
                  T--EEEE--SSBTBS---THHHHHHHHTTEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C  73 gaklvviagknfGeGSSRehAAkalrllGikaviaeSFerIfennliknglLplefk 129
                  +  +v++ g nfG+GSSRe+AA+al++ G+ +via+SF++If++n+i+ngl+ +e +
   CDO68065.1 511 PHGVVLVSGYNFGTGSSREQAATALKAAGVPLVIAGSFGDIFKRNAINNGLVCIESP 567
                  555788888*******************************************99976 PP

>> DUF521  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-06     0.018     294     357 ..     355     419 ..     343     434 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-06
      DUF521 294 valGcPhlsleElrelaellkgkkkkvkvelwvtt.srevkeeaerlglveklekaGvkvlsdtC 357
                  +l+c  + ++++++ ae++kg+k++++ve++v + s ev++ ae+ g  e+l +aG+k l + C
  CDO68065.1 355 YLLSCTNARASDIAAAAEVIKGHKVAPGVEFYVAAaSSEVQQDAEKRGDWETLIAAGAKPLPSGC 419
                 5788999999**********************9862667********************999999 PP

>> MIB_HERC2  Mib_herc2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.3   8.3e-05       0.3      19      57 ..     588     627 ..     578     629 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.3e-05
   MIB_HERC2  19 egkeGtVveirdwsa.skrsavdVqWdngssnsYRvGaeg 57 
                 +  e tV + ++ +    ++ v+V+W +g++++Y+vG  g
  CDO68065.1 588 KDGELTVNKGHHVDVkVVEGRVEVRWPSGETRTYKVGRVG 627
                 3333334444443337999******************876 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00011      0.38     144     173 ..     343     372 ..     334     380 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
                 HHHHSEEEEESSSCEEEEE--EEEEEEE-- CS
         MCM 144 amEqqtisiaKaGivatLnartsvlaAanp 173
                 ++E+++i+i+Ka +  + nar+s +aAa  
  CDO68065.1 343 VLESKHIQIQKAYLLSCTNARASDIAAAAE 372
                 89*********************9998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4430.21
//
Query:       CDO68066.1  [L=692]
Description: hypothetical protein BN946_scf184347.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-92  310.3   0.0    2.2e-92  309.8   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    0.00012   23.0   0.1    0.00049   21.0   0.0    2.1  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.032   14.5   0.1      0.088   13.1   0.1    1.7  1  DUF2104        Predicted membrane protein (DUF2104)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.8   0.0   3.8e-96   2.2e-92      19     423 .]     104     555 ..      88     555 .. 0.84

  Alignments for each domain:
  == domain 1  score: 309.8 bits;  conditional E-value: 3.8e-96
                  STEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSC CS
  AMP-binding  19 egqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaak 116
                  +++ +++ +++e+++++A gL++lGvkk+d   +++ +sp w ++ +++  +G ++++ + tl++  l++ l++ e+  ++  +++ell+ + ++aa+
   CDO68066.1 104 DYKYISFVQVKEAAQEVAGGLLRLGVKKEDIFNVYAATSPNWQLISHGCNIIGTAIATAYETLGESGLQHSLNEPECVGVF--TNAELLPVVSKVAAT 199
                  6999*****************************************************************************..888889988888886 PP

                  C-EECEEEEESCCS-HCCHCCCHCCCCSCTTS................-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH..HHHC CS
  AMP-binding 117 leavklvivldadellkeeelkeeeeseekae................kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk..letr 196
                  +  ++l iv++++e+++e  l++  +++e+ +                ++ +++++ p+d+ +i+YTSGTTG PKGV++ h nl+a++ +++  l + 
   CDO68066.1 200 V--PSLRIVIYDGEPKQE-LLDKLRGARESMQvlsvdelrklgkdvshEELKTRRPVPSDVSCIMYTSGTTGPPKGVIICHSNLMASLGAVYqlLGH- 293
                  5..555666665555544.5666666665553567889999******9555777899*******************************998654443. PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH..HHHHHHHHHHHT-SEEEEEHHHHHHH.......HH.CCCHH.C....HHHH CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaald..pklllelieklkvtviagvPrvleal.......le.sgalk.a....akka 279
                    l+ +d+++++lpl+hi+++ + +l+ +++G+t ++ + ++ +d   + ++++i+++k+t+++gvP+v+e++       ++ sg+lk      a   
   CDO68066.1 294 -HLRTEDTFIAYLPLSHILEY-IVELILFFVGMTAGYGRVKTLTDasVRNCVGDIRAFKPTIMVGVPAVWEMIrkgimqrINsSGTLKkSvfngA--- 386
                  .35569**************8.99999999*******99887777778888**********************9999888443444442233332... PP

                  C........................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE- CS
  AMP-binding 280 k........................dlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivD 352
                  +                          ++ lrl+l+gg++ls+e+++f++  + + vl+gYG+TE +g+++ ++++e ++  ++vG plp +e+k++D
   CDO68066.1 387 YtvkkagvpglsqladsavfsqikaATGGrLRLALSGGASLSAETQEFLSIALVT-VLQGYGMTESCGMCA-IMPPEFMQ-YNTVGLPLPSIEIKLLD 481
                  034466777777777777777777744556***********************97.**************9.55477755.579************** PP

                  TTTSCBEETTSE..EEEEEEETTS-SEBTT-HHHHHHH.EEETCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 353 eetgepvpdgee..GellvrgpgvmkgYlkkpeataea.fdsegrwlrTGDlgrldedGyleivgRkkdliklr 423
                    + ++  ++ +  Ge+++rgp+v+kgY+k+++++++  ++++++wlrTGD+g +++dG+l +++R+k+l+klr
   CDO68066.1 482 VPEAGYKSTNDPqqGEVCIRGPSVTKGYYKRDDLNNDEnIFTKDGWLRTGDVGQWNADGTLSLIDRIKNLVKLR 555
                  *******9777777****************999877663444667***************************96 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.2e-08   0.00049       2      63 ..     565     626 ..     564     639 .. 0.67
   2 ?   -1.8   0.0       1.1   6.6e+03      13      38 ..     632     657 ..     628     688 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8.2e-08
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..---..........HHHHHHHHHHHHT-TTTS-SEE CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..sea..........leeeLkahvrkelgpyavpkkv 63 
                    +Es++ s+  V++++V++ p++   + ++a++++++     +          +++ L++ +r        +++v
     CDO68066.1 565 LESIYKSCNLVSNICVHANPNA---QQPMAIIIPNEPhlR-QmleakgvdvdTKKSLQELCR--------NRAV 626
                    7*********************...*********533221.123223444445555555554........4443 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                    EEEEEE-----TTS---EEEEEE--- CS
  AMP-binding_C  13 aeaaVvGvpdevkGealvafVvlkdg 38 
                    +e+ +vG+++  k   l+  Vvl ++
     CDO68066.1 632 KECNAVGKKNGFKSMELLQAVVLTPD 657
                    68888888888666444444444222 PP

>> DUF2104  Predicted membrane protein (DUF2104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.5e-05     0.088      37      88 ..     284     335 ..     275     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
     DUF2104  37 lalvlaviGwllllnvsllvlvpsyilitigllliglvlgmRpGYGrietvi 88 
                 l  v  ++G  l  + +++ ++p    +   + li + +gm +GYGr+ t++
  CDO68066.1 284 LGAVYQLLGHHLRTEDTFIAYLPLSHILEYIVELILFFVGMTAGYGRVKTLT 335
                 56688899999*999********88888888999**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4455.71
//
Query:       CDO68067.1  [L=440]
Description: hypothetical protein BN946_scf184347.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-58  198.6   0.0    1.9e-58  198.4   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4   0.0     1e-62   1.9e-58       1     414 [.      31     440 .]      31     440 .] 0.86

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 1e-62
                 --SESEHHCCHCHHHHTT.TCCHHHHHHHHHHHH-.SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHH CS
        p450   1 Ppgptplplvgnllqlgr.keelhevlrklqkkyg.pifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwk 96 
                 Ppgp+ l l+gn + +   +e ++ +++ l k+yg +i+rl   ++++v++ +  a+ e+l k+++  s+r    +++    +++  g+  a + +++ 
  CDO68067.1  31 PPGPPGLSLLGNTFDVPApNEYPWLKYHALCKQYGtEILRLNALGTKIVMIDTLRAAVELLDKRSSLYSDR----FVS----AQDSAGITEAWStATTG 121
                 99****************99999**9********648***************************7444444....444....368889999988899** PP

                 HHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCC CS
        p450  97 klRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllll 194
                   R++ +++l+++  + ++++++   a+d++++l + +g+     ++e+l +a    +++i++ +++   ed+ + +l +a ++ +    +  v l+ +
  CDO68067.1 122 ASRKMTHRELHTG-PMnKYRPVLLNNAHDFLRRLSSGRGT-----LVEHLKHAIGANVMKIAYDINVL-PEDDPFVKLAEAGQQCIGRCTTGGVYLVEI 213
                 ************9.55578888888888888777665555.....5********************99.66666999999999999888899999**** PP

                 CHHHTCCSCHH.HHHHHHHHHHHHHHHHHHHHHHHHCHCHC...SCSSCSHHHHHHHHC..TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 195 fpllkylptkl.lrklkeavkklkdlldklieerretldsa...kksrrdfldalllak..kekkgesklsdeelaatvlellfaGvdTtsstlswaLy 287
                  p+lky+p++l +  +k+   +  + ++k ++  ++++ ++    +s+   + +++ ++  + +  ++ +++++l+at+ +++++G +T++s+l  +++
  CDO68067.1 214 LPFLKYVPSWLpGAGFKRQAAIWREAAEKQLHVAYDDFLERmvtRSSKLGKAGHCMAQSliDVYGIGDPVTEKHLRATTATVYLGGAETSASALHTFFL 312
                 ********9984445666666666667776766666666666663334444444444444322444469****************************** PP

                 HHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GG CS
        p450 288 eLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpe 386
                  ++ +P +q+k reE+++v+g +r pt+dd+ ++py da ikE LR +p+vpll+p+++++d   +gy+++kG+ v+vn++a+++d++ +p+P +F+p+
  CDO68067.1 313 AMVLYPRLQAKAREELERVIGTNRLPTFDDFGSIPYIDALIKELLRWYPIVPLLMPHKLSEDDMYDGYFLEKGSLVMVNVWAILHDEARYPDPYTFNPD 411
                 *************************************************************************************************** PP

                 GGB-TTS..CTESSCTT--TTEEGGGS-TT CS
        p450 387 RFldekg..nskrksfaflPFGaGpRnCiG 414
                 RFl++ +  + ++ + +  +FG+G+R C+G
  CDO68067.1 412 RFLKDGAldP-DVFDSEDAAFGFGRRVCPG 440
                 *****88853.47778889**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2927.76
//
Query:       CDO68068.1  [L=431]
Description: hypothetical protein BN946_scf184347.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.29   11.5   0.0    1.5  1  Biliv-reduc_cat  Biliverdin reductase, catalytic


Domain annotation for each model (and alignments):
>> Biliv-reduc_cat  Biliverdin reductase, catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.29       8      90 ..      37     122 ..      34     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
  Biliv-reduc_cat   8 vegkklvegtlhftggp..ldkekfGfpafsgiarlsWlvdlfGelsvtsatl.eedkekkyskmtaklktadkrpltWieergpg 90 
                      v++  lv g lhf+ ++   + ++ G++af+ iar     + fG ++   a++ ee+   +    t +l+ + +  +t ie  + +
       CDO68068.1  37 VSDAGLVSGLLHFAHSAptHELARKGLIAFAYIARELLESKRFGAVATAVAERaEEQLTLRLDEHTSRLESRVEEIMTEIEGAKKE 122
                      67788999*****876511445799**********99999*****98877765266667788888999988888888888866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2973.70
//
Query:       CDO68069.1  [L=1155]
Description: hypothetical protein BN946_scf184347.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-24   84.2   0.0    1.7e-23   83.3   0.0    1.4  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    1.7e-08   34.8   0.0    3.3e-08   33.8   0.0    1.4  1  RNase_H          RNase H
    2.2e-05   24.3   0.1      5e-05   23.1   0.1    1.7  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
     0.0004   20.0   1.2     0.0011   18.5   0.7    2.0  2  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   3.7e-27   1.7e-23       3     183 ..     530     723 ..     528     786 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 3.7e-27
                 -TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS
       RVT_1   3 Kkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellr 90 
                 K+g      ++s+Rpi+ll+++ k+l++ +a+ L   +   +ll + q+g r gr t d++   ++ +k +++++    +l+lD+k+aF   + e+l++
  CDO68069.1 530 KPGksdytvAKSWRPIALLNCISKILSRCVADVLVYEAerLSLLAHMQFGGRAGRTTTDSLhlvTKTVKDAWRRGHVASILFLDIKSAFPAADPERLYY 628
                 5555568889**********************9999999999**********************9999999**************************** PP

                 GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH...HHHH CS
       RVT_1  91 kltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee...lqel 183
                  l   +vpt+ +++++  l++r++++ ++   s ++ ++ g+ qG++lS +l+ ++ ++l+ + +++  g   +  +DD+ +++++k+    ++++
  CDO68069.1 629 NLRMRGVPTEYVDWLRVKLTGRRTRLLFDDYVSDPFDIASGIDQGCPLSVILYAFYNSDLIDSADTA-DGELAVGSMDDVALVVTGKTFdscHEKA 723
                 ****************************99988********************************95.899*************998876664444 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   7.3e-12   3.3e-08       6     142 ..    1002    1136 ..     998    1137 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 7.3e-12
                  EEEEEEEECTTTCEEEEEEECTT......EEEEEEEC..CCCHHHHHHHHHHHHHHHTT.SC....SEEEEEES-HHHHHHHHCCCHHHHHTTSSSE CS
     RNase_H    6 vYtDGsclgnpgeggagavlykeg....arnisaple..eaqtnnraELsAvieaLkalksd....ekvniytDSkYvvkgitqwvhrwkknawktt 92  
                  +YtDGs+    g g a+++++  g      +++ +l    + t   aEL  v   ++  +++    ++v i  D k ++++ t    r +  ++  t
  CDO68069.1 1002 LYTDGSAC-DGGVGAAAILYP-PGrarpR-HLYLHLGpdTRHTVYEAELAGVLLGMELIHRErrcnSAVSIALDNKAAIQASTL---RSSAPGRYLT 1092
                  8*****76.566666666664.3334533.444444347899***********99995444446667888*****999994443...3344444444 PP

                  TTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H   93 seqkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142 
                  +    ++ ++l ++l +   + +++l+wv+gH Gvp gNe+aD +Ake a
  CDO68069.1 1093 D----LFHEQLNAIL-ASRPQLRLTLRWVPGHCGVP-GNEAADAAAKEVA 1136
                  4....4556788888.4455899************9.*********9975 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.1e-08     5e-05      31     118 ..     147     246 ..     112     247 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
  Exo_endo_phos_2  31 p.kiiilGDfNakhplWgsedtds......sargeeLiefleehslsllnllksgptfkssng..sstiDltltsdnlals....kleleeedl 111
                        + i lGDfN++h+ W+++ ++        +++e L+++l+ ++++ + l+  +pt +  ++   +  D ++ ++ l+++      +     l
       CDO68069.1 147 VqQAIWLGDFNRHHQRWDDPGNTHlftvsnVRKAEVLTRYLDIFGME-MALPAGVPTLEHMRTknLTRPDNIFCTKGLRDHlrscLVRPDLRPL 239
                      258999*************777668999999****************.5555666998888885347789999999999888754223333467 PP

  Exo_endo_phos_2 112 gSDHrpi 118
                       +DH pi
       CDO68069.1 240 RTDHYPI 246
                      7888776 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.7   2.5e-07    0.0011      24     166 ..      26     169 ..      14     245 .. 0.60
   2 ?   -2.9   0.0      0.89     4e+03      69     137 ..     726     800 ..     681     812 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.5e-07
                    HHHHHCTT...SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE. CS
                    xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos  24 dlltayda...DvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni. 115
                    dll++ ++   D++++QE + d ls++  ++ ++ ++++s++     +  ++  + ++s++  t       i   d  a ++r+  a+ +  +n  
     CDO68069.1  26 DLLHKAHPndfDIIAIQEPYLDRLSLTRSTAHWRVVYPTSHH---ADVARRTRSVFLVSKRLSTNDWNPISIPHSDVTAITIRTAGAPAVHLFNMy 118
                    45555555788****************999988555555555...456666666666666666666666666666666666666666666666668 PP

                    CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlr 166
                     +  +  +v+ + ++   l  +++ ++  + +i++GDfN ++  +d +  +
     CDO68069.1 119 VDASSDTVVHAAARAMRNLGDWDDEDEGVQQAIWLGDFNRHHQRWDDPGNT 169
                    5555555555555555555555555555555*********98888877633 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.89
                    STTSSEEEEEECSTE.EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.....CCCHHGHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  69 ggggnggavlsrfpl.tslfrrtfiefndlvaalrreplaakleqlni.....ashrdhdlvrdlqllalllqve 137
                    +  ++gga++++ +   ++  ++f   n++  + r+    +  + +        +hr+  +  d+ l+     ++
     CDO68069.1 726 FLDRDGGALAWSASHnSTFSLDKFGLLNCKAQPRRIGLGPPLTLSDGTvippaGHHRFLGVLVDQGLRFREHVAA 800
                    556778888887776566666666666666666666666666666655777766666666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 7217.58
//
Query:       CDO68070.1  [L=294]
Description: hypothetical protein BN946_scf184788.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2165.43
//
Query:       CDO68071.1  [L=294]
Description: hypothetical protein BN946_scf184788.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   12.3   0.4       0.61   10.6   0.1    2.0  2  FlgN      FlgN protein


Domain annotation for each model (and alignments):
>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.54   9.7e+03      77      98 ..      20      29 ..      11      41 .. 0.47
   2 ?   10.6   0.1   3.4e-05      0.61      33      84 ..     187     240 ..     179     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.54
                HHHHHCTTCCHHHHHHHHHHHH CS
        FlgN 77 lsellakeedeelkelwqelke 98
                ++++l++            l++
  CDO68071.1 20 VQQALSE------------LST 29
                3333332............222 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 3.4e-05
                 HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCT..T CS
        FlgN  33 kagdieaLeelleekqellekleqleqkrakllaelglsaeeatlsellak..e 84 
                  ++d ++L++++ ek + ++kl+ ++++ + +l + ++ a   +l++l a   e
  CDO68071.1 187 LESDCDRLHDIAFEKLAAVRKLRSEARTVRIALRHSATAATLVGLDRLFALldE 240
                 57899**********************************999999999885441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2037.77
//
Query:       CDO68072.1  [L=154]
Description: hypothetical protein BN946_scf184788.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1167.05
//
Query:       CDO68073.1  [L=685]
Description: hypothetical protein BN946_scf184788.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-34  117.5   0.0    8.7e-34  116.8   0.0    1.3  1  EAP30           EAP30/Vps36 family
    1.3e-20   73.3   0.0    2.4e-20   72.5   0.0    1.4  1  Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
    0.00017   20.8  11.5      0.026   13.9   1.5    2.6  2  zf-RanBP        Zn-finger in Ran binding protein and others
  ------ inclusion threshold ------
       0.78    9.8   5.0       0.67   10.0   0.9    2.2  2  DZR             Double zinc ribbon
        3.9    6.9  12.8       0.04   13.3   2.5    2.7  2  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger
        5.9    7.0  10.6          4    7.6   0.6    3.1  3  zf-Sec23_Sec24  Sec23/Sec24 zinc finger


Domain annotation for each model (and alignments):
>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   2.9e-37   8.7e-34       5     236 .]     321     566 ..     319     566 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.9e-37
       EAP30   5 gl.qrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhkakiksdpafraqftk..............................mcaslGv 72 
                 g+ ++ e+ta +     ++ +++al dleal+ k+k+ +vkla+++++++++ ++                                     ++a+lG+
  CDO68073.1 321 GIlRSVETTANAS----QSNMEDALADLEALMVKWKD-MVKLAQDLNDRLTAVSTTA--PPAmpgiqggpsatvptlstqavepeeatfirsSLAQLGL 412
                 5656666666666....********************.**************99843..33358*********************************** PP

       EAP30  73 ....dplssk..kseslgflellglgdfyyeLavqivevclatraeng.....glisleelyalvnrarggvalvspdDllraiekl..lvlg...... 152
                     +p++++  ++e +          +++eLa++++ v+ +t + +g     g++ l+e++  +nrar gval++p+++l+++++l   + +      
  CDO68073.1 413 qmanAPVTQDmvRDEHK----------WMEELARELAGVLEGTGKSEGmmrkrGIVGLDEVWGGWNRAR-GVALIPPSTFLQVLPRLpsFTNPpirmrt 500
                 88888887778999999..........****************9999999999****************.99***************873333689999 PP

       EAP30 153 ...sglsvlqvggkkvvrSvptelntdqvevlevakrlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwvDd 236
                    sglsvl+           t+ + +     ++a+rlv ll  +++    t+ e+a+e   + + +++++e+++e+e  G +++D+
  CDO68073.1 501 ftgSGLSVLH-----------TPPYGSA----AFAARLVGLLSLAGP---RTTVEVAQE---EDLPIGLTQEMVDEVETAGEICRDE 566
                 999*******...........*******....*************99...699999899...************************7 PP

>> Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   7.9e-24   2.4e-20       8      91 ..      18      98 ..      13      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 7.9e-24
  Vps36_ESCRT-II  8 pvLeenEsiilvqdnVglYegdeKilnrqnGrlyLTthriiyvdsadpkkeslslelklvesvsekelssgflrsspkiilklk 91
                    ++L ++E+i+++qd+Vg+Y+g +K  ++q G++y+Tthr++y+d ++p + s +l+l++v +    e+ +g ++sspk++l++k
      CDO68073.1 18 ALLYDDEVILVSQDGVGIYDGPQKAPHHQAGTVYITTHRLFYIDASHPFSRSFALDLSHVART---EYYAGLFTSSPKVTLYFK 98
                    67999**********************************************************...***************998 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   2.9   4.7e-05      0.14       2      28 ..     125     156 ..     124     158 .. 0.80
   2 !   13.9   1.5   8.6e-06     0.026       7      27 ..     216     236 ..     215     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
                 SSSEE-SSS--EE.....ESSSSB-TTT--BT CS
    zf-RanBP   2 egdWdCskClvqN.....fawstkCvaCqapk 28 
                  ++W+C +C+++N     +++s++C  C+ p+
  CDO68073.1 125 IEFWECEVCSNRNpigmsSSSSMVCALCGVPR 156
                 579**********5555559999999998776 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 8.6e-06
                 -SSS--EEESSSSB-TTT--B CS
    zf-RanBP   7 CskClvqNfawstkCvaCqap 27 
                 C++C++ N +    C++C++p
  CDO68073.1 216 CTACTFLNNPLLRQCEICGTP 236
                 ********************9 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.17   5.1e+02       1      21 [.     130     155 ..     127     175 .. 0.65
   2 ?   10.0   0.9   0.00022      0.67       1      23 [.     216     238 ..     216     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
         DZR   1 CpqCgee.....lppdarfCseCgtk 21 
                 C  C +       ++++ +C  Cg +
  CDO68073.1 130 CEVCSNRnpigmSSSSSMVCALCGVP 155
                 55555553333334455577777765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00022
         DZR   1 CpqCgeelppdarfCseCgtklk 23 
                 C  C   ++p  r C+ Cgt+l+
  CDO68073.1 216 CTACTFLNNPLLRQCEICGTPLP 238
                 99*******************97 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.5   1.3e-05      0.04       8      61 ..     126     172 ..     120     176 .. 0.75
   2 ?   -2.5   2.8       1.1   3.4e+03      35      44 ..     229     238 ..     210     245 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
  Vps36-NZF-N   8 atWvCpICsfsNevpsnfdpnastplPpClaCGvkpdlelikksikasasskks 61 
                    W C +Cs  N++        s+   +C  CGv+  ++ +k si++ + s+ks
   CDO68073.1 126 EFWECEVCSNRNPIGMS-----SSSSMVCALCGVP--RSSLKASINIPSRSTKS 172
                  56************983.....456678******7..55677777776666555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
  Vps36-NZF-N  35 pClaCGvkpd 44 
                   C+ CG + +
   CDO68073.1 229 QCEICGTPLP 238
                  5777776655 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.6    0.0013         4      23      35 ..     127     139 ..     121     142 .. 0.87
   2 ?   -0.4   0.1       0.4   1.2e+03      21      30 ..     144     153 ..     141     157 .. 0.81
   3 ?    4.2   1.0     0.015        45      10      31 ..     214     235 ..     210     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
  zf-Sec23_Sec24  23 rwiCnfCnhknev 35 
                      w C+ C+++n++
      CDO68073.1 127 FWECEVCSNRNPI 139
                     5**********98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.4
  zf-Sec23_Sec24  21 gkrwiCnfCn 30 
                     +++++C +C+
      CDO68073.1 144 SSSMVCALCG 153
                     5789*****8 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.015
  zf-Sec23_Sec24  10 ylNpfckidfggkrwiCnfCnh 31 
                     + +  c++ ++  + +C++C++
      CDO68073.1 214 IACTACTFLNNPLLRQCEICGT 235
                     56778999999999******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4449.03
//
Query:       CDO68074.1  [L=241]
Description: hypothetical protein BN946_scf184788.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1605.11
//
Query:       CDO68075.1  [L=181]
Description: hypothetical protein BN946_scf184788.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1350.96
//
Query:       CDO68076.1  [L=458]
Description: hypothetical protein BN946_scf184788.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00046   20.7   4.0     0.0028   18.2   0.1    3.6  5  VCBS      Repeat domain in Vibrio, Colwellia, Bradyrhizobium 


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.6e-07    0.0028       5      61 .]      53     118 ..      51     118 .. 0.80
   2 ?    1.0   0.0     0.037   6.6e+02      15      43 ..     137     166 ..     125     175 .. 0.66
   3 ?   -2.6   0.0      0.48   8.5e+03      12      34 ..     251     274 ..     247     301 .. 0.44
   4 ?   -0.5   0.2      0.11   1.9e+03      40      52 ..     354     366 ..     286     379 .. 0.61
   5 ?   -2.5   0.0      0.45   8.1e+03      16      24 ..     388     396 ..     363     425 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-07
        VCBS   5 DGrlDlvva.....n.dgglrvyrnngdGt...ftdvtktslggsgggtgvavgDlDgDGdlDllv 61 
                 D ++Dlv +     + + ++++y+n ++      t+++++ ++++  +++ +++Dl gDG+ D+++
  CDO68076.1  53 DRYPDLVGFglgteDkPAAITLYVNPKNSPvpgTTKWEAVVIHTTLFPVATTFVDLTGDGYRDIVI 118
                 8899***987877633677******9876433245666679999********************85 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.037
        VCBS  15 dgglrvyrnngdGtft..dvtktslggsggg 43 
                  g+++++rn g+ +f   +++++ +g s g+
  CDO68076.1 137 GGRVQWLRNPGN-RFAkrEWAAHRIGNSTGM 166
                 58899****998.677222333344444444 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.48
        VCBS  12 vandgglrvyrnng.dGtftdvtk 34 
                 va+++g++ +++++ + +++    
  CDO68076.1 251 VAGREGIVYLHYDKsTAKWKHTVL 274
                 555666666666542333332222 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.11
        VCBS  40 sgggtgvavgDlD 52 
                 +g+ + ++ gD+D
  CDO68076.1 354 AGTVHYLRTGDFD 366
                 2222235556665 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 0.45
        VCBS  16 gglrvyrnn 24 
                 +g+++yr +
  CDO68076.1 388 EGVYIYRPT 396
                 445555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2862.97
//
Query:       CDO68077.1  [L=155]
Description: hypothetical protein BN946_scf184788.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   67.1   0.0    2.4e-18   66.9   0.0    1.1  1  DUF1687   Protein of unknown function (DUF1687)


Domain annotation for each model (and alignments):
>> DUF1687  Protein of unknown function (DUF1687)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.3e-22   2.4e-18      15     127 ..      18     134 ..       2     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.3e-22
     DUF1687  15 hnakspaSnkllklLkkasakasekakedqereefelev.tekfPTlDQlktilsyvgkska.ksvlksafpelseilkkfkkdeeskkklkelvke.. 109
                 hn++spaS+++l+lL++a+++ +  +k++++  +f+lev ++k+PT+DQl+tilsy+ ++    +  + +   l +++ ++++++++ + + el+++  
  CDO68077.1  18 HNPSSPASTSALRLLRSAVSSPYPPSKPSSPPLHFDLEViENKPPTADQLRTILSYLPAKAPsGQSQTPSADILLSAHPTVDSRPTNPEGIVELASQnp 116
                 9********************************************************999554333333333588999999999999999999988634 PP

     DUF1687 110 dlFkrplvVDWdngkiaa 127
                 +  k+p+vVDW +g++++
  CDO68077.1 117 NALKWPIVVDWHSGRAVI 134
                 7888********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1149.75
//
Query:       CDO68078.1  [L=214]
Description: hypothetical protein BN946_scf184788.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-27   93.7   0.4    8.5e-26   90.2   0.4    2.1  1  Prefoldin     Prefoldin subunit
  ------ inclusion threshold ------
      0.087   12.8   1.5       0.23   11.5   0.1    2.1  2  Prefoldin_2   Prefoldin subunit
        0.1   13.2   2.9       0.51   10.9   1.2    2.4  2  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.4   1.4e-29   8.5e-26       3     120 .]      51     190 ..      49     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.4e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.......................-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHH CS
   Prefoldin   3 eeleslqaelaqlkeaieelektletlktlkk......................edegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAi 79 
                  +  +l+++++ l+++i++++ktl++++ l++                      + ++ +++++l+++ly++a+++dtd v+++lGa++++ ++l  Ai
  CDO68078.1  51 YMDHNLTQRRRGLEDKIPDIKKTLAMVEFLQErregksdagddlnddelvdeddKAKPLTTTFELNDTLYAEAQLEDTDTVYLWLGANVMLSYKLPAAI 149
                 5667999********************************************999999****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  80 ellkkkleelekqlekleeeleklkdqittleanlaqlyqk 120
                  ll  kl++++++l+++ e+le+l++qit +e+n a++y++
  CDO68078.1 150 SLLRSKLDTAQNSLTTVIEDLEFLREQITVMEVNTARVYNW 190
                 ****************************************8 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.13   7.7e+02      15      36 ..      54      75 ..      36      86 .. 0.56
   2 ?   11.5   0.1   3.8e-05      0.23      30      97 ..     114     182 ..      97     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 15 qqlaqqikqletqlkelelvle 36
                 ++l q ++ le ++ +++++l 
   CDO68078.1 54 HNLTQRRRGLEDKIPDIKKTLA 75
                 4444444444444444444444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.8e-05
                  HHHHHHHHHHHS-TT--EEEEET.TEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  30 elelvleelelldedtkvyklvG.dvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelke 97 
                  el+++l +  +l+++++vy   G +v+++ +++ +++ L  +++t++  ++t+ + le l+++++ ++ 
   CDO68078.1 114 ELNDTLYAEAQLEDTDTVYLWLGaNVMLSYKLPAAISLLRSKLDTAQNSLTTVIEDLEFLREQITVMEV 182
                  7777777778999999***99996799999*********************************987765 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.05     3e+02      40      68 ..      50      78 ..      36     132 .. 0.77
   2 ?   10.9   1.2   8.5e-05      0.51      44      87 ..     157     198 ..     104     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
  Syntaxin-6_N 40 detrteLrkalrsiewdledLeetvrive 68
                  +   ++L +  r +e ++ d+++t ++ve
    CDO68078.1 50 RYMDHNLTQRRRGLEDKIPDIKKTLAMVE 78
                  55556677777777888888888877776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.5e-05
  Syntaxin-6_N  44 teLrkalrsiewdledLeetvriveknpsk.fkidekelsrrraf 87 
                   +  +++l ++ +dle L+e + ++e n ++ +   + +++rrr++
    CDO68078.1 157 DTAQNSLTTVIEDLEFLREQITVMEVNTARvY---NWDVKRRREI 198
                   455789999*****************976655...5556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1577.94
//
Query:       CDO68079.1  [L=789]
Description: hypothetical protein BN946_scf184788.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-65  217.3   0.0    1.7e-19   69.4   0.0    5.4  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    9.7e-06   25.4   0.0      0.053   13.4   0.0    3.3  4  RRM_occluded  Occluded RNA-recognition motif
     0.0027   17.5   0.0          2    8.2   0.0    4.3  5  RRM_Rrp7      Rrp7 RRM-like N-terminal domain
     0.0035   17.6   2.1         45    4.2   0.1    5.9  6  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra
  ------ inclusion threshold ------
      0.016   15.2   0.0         22    5.1   0.0    3.8  4  RRM_3         RNA binding motif
       0.05   13.6   0.0         11    6.1   0.0    3.7  4  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   8.6e-13   2.6e-09       1      69 [.       4      76 ..       4      77 .. 0.92
   2 !   69.4   0.0   5.7e-23   1.7e-19       1      70 []     259     329 ..     259     329 .. 0.98
   3 !   25.4   0.0   3.1e-09   9.2e-06       1      69 [.     447     510 ..     447     511 .. 0.95
   4 !   25.3   0.0   3.3e-09   9.9e-06       1      69 [.     571     645 ..     571     646 .. 0.90
   5 !   53.7   0.0   4.4e-18   1.3e-14       2      69 ..     673     740 ..     672     741 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 8.6e-13
                EEEESETTTSSHHHHHHHHH....TTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFs....kfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                l+V+nLp ++t+e L+++F+    + G  +++kl+ + +g+s++f+f+ ++++ +Ae+A++ +n+  ++++++
  CDO68079.1  4 LIVKNLPAYLTQERLRKYFEspdgPGGTLTDVKLMLKPDGTSRRFGFIGYKTPQEAERAKKWFNRSFVDSSRI 76
                78*****************7444368999************************************99999887 PP

  == domain 2  score: 69.4 bits;  conditional E-value: 5.7e-23
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lf++nL++ +te+eL+elF+ +G+++ + lv d +t++skg+a+V F+++++A +A eal+++ ++gr l+
  CDO68079.1 259 LFIRNLTFMCTEDELRELFQRYGEVSQVHLVLDpSTKQSKGIAYVSFAKPDSALAAHEALDKTSFQGRLLH 329
                 8******************************************************************9875 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 3.1e-09
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 + V+n+p+ ++  +++++F++ G+ +++ +++     +   a VeF   ++ +kA +a+  + lg++++
  CDO68079.1 447 ILVKNIPYGTSAADIRAMFEPHGELRRVLVPP-----AGTLAVVEFVHADEGRKAFRAVAYRRLGNSVI 510
                 68******************************.....599*******************9999999887 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 3.3e-09
                 EEEESETTTSSHHHHHHHHHTTSCE..EEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi..ksiklvrd....etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfV+nL+++++ e+  +++++  ++   +++  +d      + s+g++fV F + e+A++ l++ +g+ l+g++l
  CDO68079.1 571 LFVKNLAFSTSTEKFAQVMRHLPDYafARVQTKPDparpGVRLSMGYGFVGFRTVEAAKRGLKSIDGMVLDGHKL 645
                 8***********************9445666666698777788*****************************997 PP

  == domain 5  score: 53.7 bits;  conditional E-value: 4.4e-18
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +V+n+p+++t+++++elF+   + ks++l+r+ +++++gfaf eF+++ +Ae+A ++l ++ l gr l
  CDO68079.1 673 IVKNVPFEATKKDIRELFGAHAQLKSVRLPRKFDHRTRGFAFLEFTTRHEAERAYATLRHTHLLGRHL 740
                 59**********************************************************99999865 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.3   6.9e+03       8      35 ..       8      38 ..       4      43 .. 0.72
   2 !    8.0   0.0   0.00084       2.5      14      70 ..     269     330 ..     259     335 .. 0.84
   3 !   13.4   0.0   1.8e-05     0.053       1      49 [.     444     491 ..     444     503 .. 0.92
   4 ?   -3.6   0.0       3.7   1.1e+04      14      34 ..     682     701 ..     676     736 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
  RRM_occluded  8 plsDtvnkariralveek...egeikkivLv 35
                  +l+   +++r+r+ +e+     g ++++ L+
    CDO68079.1  8 NLPAYLTQERLRKYFESPdgpGGTLTDVKLM 38
                  7888889999999999886544777777664 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00084
  RRM_occluded  14 nkariralveekegeikkivLvpd......heGAivefkdekiagkasLaLdgsefegkklrc 70 
                   +++++r+l++ + ge+ +++Lv d      ++ A v f++  +a  a  aLd ++f+g+ l++
    CDO68079.1 269 TEDELRELFQRY-GEVSQVHLVLDpstkqsKGIAYVSFAKPDSALAAHEALDKTSFQGRLLHI 330
                   78899*******.99999999876333332345**************************9997 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.8e-05
  RRM_occluded   1 ertisllplsDtvnkariralveekegeikkivLvpdheGAivefkdek 49 
                   +r+i + +++   + a ira++e++ ge++++++ p    A+vef ++ 
    CDO68079.1 444 DRIILVKNIPYGTSAADIRAMFEPH-GELRRVLVPPAGTLAVVEFVHAD 491
                   6899999******************.*******************8875 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.7
  RRM_occluded  14 nkariralveekegeikkivL 34 
                   +k+ ir+l+  + +++k + L
    CDO68079.1 682 TKKDIRELFGAH-AQLKSVRL 701
                   677788888887.77777665 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.5   7.4e+03      45      64 ..       5      24 ..       3      28 .. 0.85
   2 !    8.2   0.0   0.00066         2      42     108 ..     257     321 ..     247     340 .. 0.83
   3 ?    0.6   0.0      0.14   4.3e+02      39      64 ..     442     467 ..     378     477 .. 0.87
   4 ?    1.1   0.0      0.11   3.2e+02      40      64 ..     567     591 ..     555     603 .. 0.80
   5 ?    0.2   0.0      0.19   5.8e+02      40      66 ..     668     694 ..     659     701 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.5
    RRM_Rrp7 45 FlvNlPiettletlkkffqk 64
                 + NlP   t e l+k+f+ 
  CDO68079.1  5 IVKNLPAYLTQERLRKYFES 24
                56799*999*******9975 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00066
    RRM_Rrp7  42 rslFlvNlPiettletlkkffqkvalgatiesvvsslltdeqedvsidltkltsdlelkdeekdeee 108
                   lF+ Nl    t ++l++ fq+    +++  v    +++++ + ++  +k+ s l    +e  +++
  CDO68079.1 257 SRLFIRNLTFMCTEDELRELFQRYGEVSQVHLVLDPSTKQSKGIAYVSFAKPDSALAA--HEALDKT 321
                 569*****************************9999999***************9998..3444444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.14
    RRM_Rrp7  39 essrslFlvNlPiettletlkkffqk 64 
                 +s+r + + N+P  t+ + ++ +f+ 
  CDO68079.1 442 RSDRIILVKNIPYGTSAADIRAMFEP 467
                 378999999*******9999999975 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.11
    RRM_Rrp7  40 ssrslFlvNlPiettletlkkffqk 64 
                  + +lF+ Nl   t++e++ + +++
  CDO68079.1 567 AGTTLFVKNLAFSTSTEKFAQVMRH 591
                 6899***************999876 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.19
    RRM_Rrp7  40 ssrslFlvNlPiettletlkkffqkva 66 
                     + + N+P e+t + +++ f+ +a
  CDO68079.1 668 HTTKMIVKNVPFEATKKDIRELFGAHA 694
                 45668889***************9885 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17     5e+02       5      36 ..       5      36 ..       3      39 .. 0.77
   2 ?    0.3   0.1      0.25   7.4e+02     100     133 ..     270     309 ..     162     332 .. 0.66
   3 ?    4.2   0.1     0.015        45     102     168 ..     348     410 ..     345     415 .. 0.75
   4 ?    0.1   0.0      0.27     8e+02       1      24 [.     444     466 ..     444     475 .. 0.85
   5 ?   -1.2   0.0       0.7   2.1e+03     122     139 ..     615     632 ..     594     650 .. 0.78
   6 ?    3.4   0.0     0.028        82     115     140 ..     703     728 ..     678     747 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
    PHM7_cyt  5 lvtgiPkelrseeklkeffee.lypgkvvesvq 36
                +v+++P  l+ +e+l+++fe+   pg  +++v 
  CDO68079.1  5 IVKNLPAYLT-QERLRKYFESpDGPGGTLTDVK 36
                7899999888.889*****98345777777765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.25
    PHM7_cyt 100 rekleeldeeieeerekv......kkkplgaaFvtfeser 133
                 +++l+el +++ e  + +      +k+ +g+a v+f++  
  CDO68079.1 270 EDELRELFQRYGEVSQVHlvldpsTKQSKGIAYVSFAKPD 309
                 3333333333333333323333323344566666666544 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.015
    PHM7_cyt 102 kleeldeeieeerekvkkkplgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelAPe 168
                 k ++l++e +++r+    k+ ++a   ++s   a ++a+++   ++    +np+    +  v+lA +
  CDO68079.1 348 KKKSLKQERDAKRKAMAGKEFNWAMLYMNSDAVASSIADRMN--ISKADILNPES--DNAAVKLALA 410
                 778999********9999*******************98432..33445666753..5566666655 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.27
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffe 24 
                 +r +lv++iP  ++   +++ +fe
  CDO68079.1 444 DRIILVKNIPYGTS-AADIRAMFE 466
                 799*******9999.778999997 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.7
    PHM7_cyt 122 lgaaFvtfesersaaava 139
                 +g++Fv f++ ++a+  +
  CDO68079.1 615 MGYGFVGFRTVEAAKRGL 632
                 899*******99998765 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.028
    PHM7_cyt 115 ekvkkkplgaaFvtfesersaaavak 140
                 +k++ +++g aF +f ++++a+ +++
  CDO68079.1 703 RKFDHRTRGFAFLEFTTRHEAERAYA 728
                 45788999**************9984 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.8   8.3e+03      42      76 ..      51      83 ..      48      86 .. 0.66
   2 ?    5.1   0.0    0.0074        22      14      60 ..     269     321 ..     259     366 .. 0.77
   3 ?    5.0   0.0    0.0085        26      12      57 ..     455     500 ..     446     513 .. 0.88
   4 ?   -1.3   0.0      0.73   2.2e+03      12      33 ..     680     701 ..     673     744 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.8
                EEESSHHHHHHHHHHHHHC-B-CCTSSEEEEE--H CS
       RRM_3 42 vrFkedeeakkalekateaklkikdaevtlelLeG 76
                + +k+++ea++a +    +   ++   +t++++eG
  CDO68079.1 51 IGYKTPQEAERAKKWFNRS--FVDSSRITVDIVEG 83
                5677777777776555544..67777788888877 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0074
                 -HHHHHHHCHCCS-ECEEEE-TTSSE......EEEEESSHHHHHHHHHHHHHC CS
       RRM_3  14 sredikellsklgevayvdyekgdke......gevrFkedeeakkalekatea 60 
                 + ++++el++++gev  v +  + ++      ++v F+++++a +a e++ ++
  CDO68079.1 269 TEDELRELFQRYGEVSQVHLVLDPSTkqskgiAYVSFAKPDSALAAHEALDKT 321
                 5789*********9999977543222122233689999999988887776555 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0085
                 S--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHH CS
       RRM_3  12 elsredikellsklgevayvdyekgdkegevrFkedeeakkaleka 57 
                  +s  di+ +++ +ge++ v +    + + v F +++e++ka+ + 
  CDO68079.1 455 GTSAADIRAMFEPHGELRRVLVPPAGTLAVVEFVHADEGRKAFRAV 500
                 67889*************************************9875 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.73
                 S--HHHHHHHCHCCS-ECEEEE CS
       RRM_3  12 elsredikellsklgevayvdy 33 
                 e +++di+el+ ++ +++ v +
  CDO68079.1 680 EATKKDIRELFGAHAQLKSVRL 701
                 5678999999999998877755 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.24   7.1e+02      35      52 ..      45      62 ..      19      62 .. 0.83
   2 ?    6.1   0.0    0.0036        11      16      52 ..     272     314 ..     267     314 .. 0.83
   3 ?   -1.8   0.0       1.1   3.3e+03      14      46 ..     458     490 ..     456     496 .. 0.82
   4 ?    1.2   0.0      0.12   3.7e+02      36      53 .]     710     727 ..     683     727 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.24
  Nup35_RRM_2 35 evsvmyvkfesekdaekA 52
                 ++ + ++ ++++ +ae+A
   CDO68079.1 45 SRRFGFIGYKTPQEAERA 62
                 577899**********99 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0036
  Nup35_RRM_2  16 lVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekA 52 
                  + +e F+ +Ge+ +          +++ ++yv f+++++a  A
   CDO68079.1 272 ELRELFQRYGEVSQVHLVldpstkQSKGIAYVSFAKPDSALAA 314
                  6678899999999955555888889999***********9876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
  Nup35_RRM_2  14 ielVlehFasfGeIvkhyvpkevsvmyvkfese 46 
                  ++++++ F+  Ge  +  vp++  +++v+f   
   CDO68079.1 458 AADIRAMFEPHGELRRVLVPPAGTLAVVEFVHA 490
                  67899999999***9999999999999999665 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.12
  Nup35_RRM_2  36 vsvmyvkfesekdaekAL 53 
                  + +++++f ++ +ae+A+
   CDO68079.1 710 RGFAFLEFTTRHEAERAY 727
                  5689************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5489.76
//
Query:       CDO68080.1  [L=548]
Description: hypothetical protein BN946_scf184788.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3884.08
//
Query:       CDO68081.1  [L=449]
Description: hypothetical protein BN946_scf184788.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.9e-102  340.5  18.2   8.2e-102  340.3  18.2    1.0  1  STE3      Pheromone A receptor


Domain annotation for each model (and alignments):
>> STE3  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.3  18.2  4.6e-106  8.2e-102       1     289 []      14     300 ..      14     300 .. 0.99

  Alignments for each domain:
  == domain 1  score: 340.3 bits;  conditional E-value: 4.6e-106
        STE3   1 vlsflafvlvliplpwhlrarnigalllilwllllnlisfvnaiiWsgnvvdkapvwCDisskliiaasvglpaallcIvrrLykilslravllsskek 99 
                 ++s+l+f+l+ ipl+whl+a+n+g++l+i+w+ +  l++f+n+++W++n++++apvwCDi++++ i++s+g+++a+l+I+rrLy+i+++++v++s+++k
  CDO68081.1  14 AFSLLGFILITIPLYWHLEAWNVGCVLYIFWIGTQSLFQFINSVVWRDNAINWAPVWCDITTHFTIGSSIGVCCASLVINRRLYHIANISTVSISRSDK 112
                 599************************************************************************************************ PP

        STE3 100 rrkliidlliclgiPllimalhyivqghRydIiediGCvpalyntwlalvlvliwpliislvaavyavltlrafikrrkqfkellsssnsglnksrflR 198
                 rr++++dl+i++giP++ m+l++++qghR+dI+e +GC+  + n+ la++l++ wp++i+lv+a y++ltlraf+krr++f++l++s+ ++l+++r++R
  CDO68081.1 113 RRNMVTDLAIGVGIPIVSMCLYWVYQGHRFDILEGVGCTEEFPNSFLAYLLYFTWPIVIGLVSATYCILTLRAFFKRRRDFSTLVASN-NNLTFNRYFR 210
                 ***********************************************************************************99996.********** PP

        STE3 199 LlalalliilltlplsiyllvsnltqsplqpwysweevhadfstilkvpasewkasskevsalelnrwilvvlailfflfFGfgkeavksY 289
                 L+ la++++l+t+pls y +v+n+++ p++p  +++++h +fs++++ +a +w++++ +v+a+++++w+++ +a+lfflfFG+++ea+k+Y
  CDO68081.1 211 LMGLAAIEVLFTIPLSTYNIVENART-PIYPFRGFADLHFWFSRVDQRSALSWRSEPATVAAVHFKQWTVIGCALLFFLFFGMAEEARKHY 300
                 ************************55.6799*****************999***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3078.78
//
Query:       CDO68082.1  [L=78]
Description: hypothetical protein BN946_scf184788.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-06   24.9   2.5      9e-06   24.8   2.5    1.0  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.011   14.6   0.0    1.1  1  Sugar_tr  Sugar (and other) transporter
      0.027   14.6   0.3      0.038   14.1   0.3    1.2  1  DUF3325   Protein of unknown function (DUF3325)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   2.5   1.5e-09     9e-06     104     177 ..       3      73 ..       1      78 [] 0.83

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.5e-09
       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                  + +a+  ++fp ++rg ++gl ++++ +  i++p+++ +    l   ++ y+ +++ + a++++l llp ep+
  CDO68082.1   3 GVLYAISPEVFPAKDRGTGNGLTATATRVFGIIAPVIALYAN--LQTAVPVYVSGGLIIGAGLIAL-LLPYEPR 73 
                 5789*********************************76666..889999***********99644.4443333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.9e-06     0.011     369     414 ..       3      48 ..       1      73 [. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH CS
    Sugar_tr 369 pvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig 414
                 +v++ +++E+fp + R+++  +++++  ++ ++  ++  ++  +  
  CDO68082.1   3 GVLYAISPEVFPAKDRGTGNGLTATATRVFGIIAPVIALYANLQTA 48 
                 58999*******************************9999866655 PP

>> DUF3325  Protein of unknown function (DUF3325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   6.4e-06     0.038      37      86 ..      28      73 ..      17      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.4e-06
     DUF3325 37 llrlaGwlllllslalavaawgwavGlvlwlgllslaAlllvllLayrpr 86
                + r++G  + +++l++ +++       v++ g l ++A l++llL+y+pr
  CDO68082.1 28 ATRVFGIIAPVIALYANLQTAV----PVYVSGGLIIGAGLIALLLPYEPR 73
                5677777777777777776655....89999******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 555.91
//
Query:       CDO68083.1  [L=415]
Description: hypothetical protein BN946_scf184788.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-13   49.5   4.4    2.8e-13   49.5   4.4    1.8  2  Sugar_tr  Sugar (and other) transporter
    4.7e-13   48.8  29.4      8e-13   48.0  29.5    1.3  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   4.4   3.2e-17   2.8e-13      53     215 ..     104     277 ..      99     297 .. 0.89
   2 ?    0.1   0.3     0.032   2.9e+02      15      80 ..     342     410 ..     332     413 .. 0.68

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 3.2e-17
                 HTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHH CS
    Sugar_tr  53 siflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGi 151
                  ++++G ++G+++ g+  d++GR++s+  + +++ + ++  + ++    +  l+    ++G+gvG+   + +     + p ++ + l ++   ++++G+
  CDO68083.1 104 LALNIGLFVGAVLWGFGCDIWGRRWSFNLTLLIAGVFGLAAGGSP---DFLTLASLLAVLGLGVGGNLPVDSAVFLDFVPGDHQYLL-TILSIWWSVGQ 198
                 5789***********************999999999999999999...899999999**************************7655.67789****** PP

                 HHHHHHHHHH.HTSS-...........TTHHHHHHHCCHHHHHHHHHHGGG...S---HHHHHHTT-HHHHHHHHHHHH CS
    Sugar_tr 152 lvaaifglgl.nktsn...........adgwrillglqlvpallllilllf...lPESPrylvekgkeeeakevlaklr 215
                 lva+++ + l +++s            + gwr+ll+    ++l+l  +++f   l ESPry+v +g++ +a +v+ ++ 
  CDO68083.1 199 LVASFIAWPLiAHFSCpqgsttcmrseNMGWRYLLFTLGGMTLILWGVRFFvfpLYESPRYFVGRGRDADAVQVIHEIA 277
                 **********88888899********99**************99988777732357***************99998854 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.032
                 HHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHH.HHHHTHHHHHHHHHHHHHHHHH..HTTHHHHHH CS
    Sugar_tr  15 dtgvigafltllkfaknfglsksksskeessvlsg.livsiflvGaiiGslfagllgd..rfGRkksll 80 
                   g+ig ++tl++ +  + l ++ ++  +ss  ++     i+ v+++ G+++ag++++  ++GRk +l+
  CDO68083.1 342 LWGIIGLASTLYNSFLPYLLASRGAQFGDSSYSITyRNQVILGVVGVPGAFLAGWAVEqpYIGRKGTLA 410
                 458888888888888777777777776653332220334566677889999999999755789998876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0  29.5   8.9e-17     8e-13      17     279 ..      85     411 ..      64     414 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 8.9e-17
       MFS_1  17 palplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwf 114
                  ++ + + +++++++ +++l   +  +g +v+++++G+  d +Grr+ + l+ll+ ++++l++  +s+ + +l+ l ++ Glg g+ +p+  a++ d +
  CDO68083.1  85 GLILSPVVNEFHFNGPFLSL---ALNIGLFVGAVLWGFGCDIWGRRWSFNLTLLIAGVFGLAAG-GSPDFlTLASLLAVLGLGVGGNLPVDSAVFLDFV 179
                 22222678999999999998...5556889*******************999999999955555.477777**************************** PP

       MFS_1 115 pkeergraigllsagfslGailgpllggllasslg...............Wravfyilaivslla.fv.lfllllpeepperkrkspkeee........ 188
                 p+ ++   + +ls+ +s+G +++  ++  l+++++               Wr++ + l++++l++ +v +  +++p  +++r  +   ++         
  CDO68083.1 180 PG-DHQYLLTILSIWWSVGQLVASFIAWPLIAHFScpqgsttcmrsenmgWRYLLFTLGGMTLILwGVrF--FVFPLYESPRYFVGRGRDAdavqvihe 275
                 **.9999999*************999998888999*******************9999999998835544..777777777777777777788899999 PP

       MFS_1 189 ..................................kgtgpaplvp........awkallkdpvl.w...illialllfffgfsglltllplylqevlgls 241
                                                   +      l++        ++k l+  p l w   +l++ + +++++ +++ ++lp  l   +g  
  CDO68083.1 276 iaryngrtsdltvedliaagnavggpdaerrneqA------LLSrssvftmdHIKGLFETPKLaWstsLLIFLWGIIGLASTLYNSFLPY-LLASRGAQ 367
                 99999999999999999999999999985444332......4434555558888888888888675542333333333333336666666.45555555 PP

       MFS_1 242 ....glllaglllallalvgailallagrlsdr..lgrrrrlll 279
                     ++ +++    +l++vg+++a+lag+ +    +gr+ +l l
  CDO68083.1 368 fgdsSYSITYRNQVILGVVGVPGAFLAGWAVEQpyIGRKGTLAL 411
                 66767677777788999999999******997656776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2973.94
//
Query:       CDO68084.1  [L=922]
Description: hypothetical protein BN946_scf184788.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-17   63.4   0.1    5.5e-09   36.1   0.1    2.4  2  Myb_DNA-binding  Myb-like DNA-binding domain
    3.3e-12   46.5   0.0    2.6e-05   24.4   0.0    2.5  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    1.6e-06   28.1   0.0      0.024   14.7   0.0    2.3  2  SLIDE            SLIDE


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   9.3e-13   5.5e-09       1      45 [.     124     173 ..     124     174 .. 0.95
   2 !   25.2   0.0   2.3e-09   1.4e-05       1      44 [.     212     259 ..     212     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9.3e-13
                      CSSSBHHHHHHHHHHHHHHT.TCHHHHHH....HHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhG.nrWkkIae....rlggRtekqcrsrwrny 45 
                      r+kWt eE + L+ +++k+G ++Wk+I++    ++ gR++ + ++r+r+y
       CDO68084.1 124 RKKWTMEETQMLVAGCNKWGvGNWKSILNdpefKFDGRSPVDLKDRFRTY 173
                      79***************************9977777************99 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 2.3e-09
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHH....HHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIae....rlggRtekqcrsrwrn 44 
                      r ++teeEd  L  +  khG  W++I +      ++R   + r+r+rn
       CDO68084.1 212 RRPFTEEEDRALKAGYDKHGTVWATIVKdpifQAQNRRSTDLRDRFRN 259
                      679***********************999*88888************9 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-07   0.00082       1      57 [.     127     187 ..     127     189 .. 0.85
   2 !   24.4   0.0   4.3e-09   2.6e-05       1      49 [.     215     266 ..     215     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.4e-07
  Myb_DNA-bind_6   1 WteeEdeiLlklvekyg.ndWknI..aealn..rRtpkqcfdrwknkLrpkisrkkwskeed 57 
                     Wt eE++ L+ ++ k g  +Wk+I    +++   R+p +++dr+++   p+ +r+ ++++++
      CDO68084.1 127 WTMEETQMLVAGCNKWGvGNWKSIlnDPEFKfdGRSPVDLKDRFRT-YYPDAYRQHYPNAKT 187
                     *****************67*****6633355556************.889999999988765 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 4.3e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaea..ln..rRtpkqcfdrwknkLrpkisr 49 
                     +teeEd++L  ++ k+g  W +I +   +   +R++++++dr++n   p++++
      CDO68084.1 215 FTEEEDRALKAGYDKHGTVWATIVKDpiFQaqNRRSTDLRDRFRN-AFPDLYQ 266
                     7**********************9987555799************.6677665 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.9e-06     0.024      44     103 ..     119     170 ..     109     174 .. 0.82
   2 !   10.9   0.1   5.9e-05      0.35      42      92 ..     206     246 ..     179     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.9e-06
       SLIDE  44 psnkgkkeyteeeDrfllvllakyGygnyekikkeiresplFrfDwflksrtpqelqkRc 103
                 p++k++k++t ee ++l+   +k G+gn++     i ++p+F+fD     r+p +l+ R 
  CDO68084.1 119 PEKKQRKKWTMEETQMLVAGCNKWGVGNWKS----ILNDPEFKFD----GRSPVDLKDRF 170
                 67778888********************865....6789****97....67777777766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.9e-05
       SLIDE  42 yppsnkgkkeyteeeDrfllvllakyGygnyekikkeiresplFrfDwflk 92 
                   + +k+++ +teeeDr+l       Gy++   + + i ++p F+     +
  CDO68084.1 206 K-TRSKKRRPFTEEEDRALKA-----GYDKHGTVWATIVKDPIFQA----Q 246
                 3.45566667********966.....77777777788888888776....4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 5822.99
//
Query:       CDO68085.1  [L=349]
Description: hypothetical protein BN946_scf184788.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   35.2   0.1    4.4e-08   33.6   0.0    1.9  2  PCI         PCI domain
  ------ inclusion threshold ------
      0.064   13.6   0.1       0.17   12.2   0.1    1.8  1  EF-hand_14  EF-hand domain
       0.15   11.7   0.0       0.33   10.6   0.0    1.5  1  DUF3562     Protein of unknown function (DUF3562)


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   9.4e+03      21      48 ..      31      57 ..      23      67 .. 0.67
   2 !   33.6   0.0   7.4e-12   4.4e-08      29     100 ..     229     304 ..     201     309 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                HHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
         PCI 21 elkdleeelladdglaqllesLekkvre 48
                el  +  e+++  + ++l+ +L +k+ e
  CDO68085.1 31 ELHPF-FESFRSLYSRKLWHQLTNKLFE 57
                55555.5666666666677777777654 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 7.4e-12
                 HHHHTTHHHHHHHHHHHHHHHHHHHHHH....CESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI  29 lladdglaqllesLekkvrerllrqvsk....iyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 + + + l++ ++ L++k+ +++l++ ++    + ++ s++++a+  +l+ devE++++k+ + ++i++++dq+++ 
  CDO68085.1 229 FGELPILQENYPFLRQKICLMALIESVFkrgsYDRTMSFQTIAEETHLPLDEVEHLVMKALSLKLIKGSLDQVDQK 304
                 56667888999*********998765555**88899************************************9985 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.8e-05      0.17       3      72 ..      53     122 ..      51     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
  EF-hand_14   3 dllfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvekekseaeesetleldretFkkcv 72 
                 + lf+ f++  ++  +v  + k ++++G+r + +RL e+  k+ k+ ++  ++ +  t  l+r   +k  
  CDO68085.1  53 NKLFEFFDHPLSKPYRVDVFNKFVRDFGLRLNQLRLVEMGVKVSKEIDNPVTHLQFLTDLLERVNIEKSP 122
                 579*****9999*******************************999888877777777777776666655 PP

>> DUF3562  Protein of unknown function (DUF3562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.6e-05      0.33       7      29 ..     266     288 ..     262     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.6e-05
     DUF3562   7 iiqaiAeetdaPeelVsrlyeda 29 
                 + q iAeet+ P ++V++l + a
  CDO68085.1 266 SFQTIAEETHLPLDEVEHLVMKA 288
                 5699**************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2306.54
//
Query:       CDO68086.1  [L=159]
Description: hypothetical protein BN946_scf184788.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-08   32.5  14.1    4.8e-08   32.3  14.1    1.1  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.042   12.7   9.4      0.052   12.4   9.4    1.1  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3  14.1   5.4e-12   4.8e-08       2     101 ..      57     158 ..      56     159 .] 0.91

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 5.4e-12
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +la+f+s+ +++++g++ ++ ++ +   ++ps+i ++ ++  ++++++  ++Gr+ d +G+r ++ lg +l+++++ll ++a ++  ++l+  +++Glg
  CDO68086.1  57 FLALFCSFGQMNAFGTFQSWyTMHQLRDLQPSTIAWIGSVQLWVFFFSGGFIGRMFDVYGPRILMALGTALYVSSILLTSVARTYLeYILAQGIMSGLG 155
                 89******************88877778***********************************************555556688888999999999999 PP

       MFS_1  99 aga 101
                  g+
  CDO68086.1 156 IGM 158
                 876 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   9.4   5.8e-06     0.052      16     118 ..      58     158 ..      46     159 .] 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.8e-06
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGH.HHHH CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgR.vlvG 113
                 +++  +f  +++f +++ +++ ++  + + +++ +i s+ l + ++++ f+g + d++G +  ++ +++l+v +++l+ +a    ++  +i+++ + +G
  CDO68086.1  58 LALFCSFGQMNAFGTFQSWYTMHQLRDLQPSTIAWIGSVQLWVFFFSGGFIGRMFDVYGPRILMALGTALYVSSILLTSVAR---TYLEYILAQgIMSG 153
                 444455555556666666666665555555667899999999****************************************...67777777616679 PP

                 HHHHH CS
    Sugar_tr 114 igvGl 118
                 +g+G+
  CDO68086.1 154 LGIGM 158
                 **996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1124.24
//
Query:       CDO68087.1  [L=164]
Description: hypothetical protein BN946_scf184788.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-07   29.4  15.3      8e-06   25.0  16.1    1.9  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.096   11.0   7.4       0.11   10.8   7.4    1.0  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.8     8e-07    0.0072     191     271 ..      13      89 ..       3      91 .. 0.81
   2 !   25.0  16.1   8.9e-10     8e-06       3     131 ..      32     162 ..      30     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8e-07
       MFS_1 191 tgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrl 271
                 +  +p+++ +++l  +++l+ l+i++++++fg+++ + ++ +y  + +g +   ++ ++la+l l+++++++  + ++d +
  CDO68087.1  13 QTSTPWLD-LRSLQDSRFLL-LVIGSCFVSFGLFTPFCYIVSY-ATAHGVD-PTTSFYVLAMLNLASVFGRIAPAHFADAF 89 
                 47889999.99999999997.99********************.*******.67777778888888877787766666655 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 8.9e-10
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlg 98 
                 l++   + ++++++p+  +  +a+++g++p++   +l++  l+++++ +  ++++d fGr  +l+ +++l ++++l+l+ +  ++l+ l++  +l Gl 
  CDO68087.1  32 LVIGSCFVSFGLFTPFCYIvSYATAHGVDPTTSFYVLAMLNLASVFGRIAPAHFADAFGRFALLVPCAFLAGASSLILW-StaQTLTQLMAYAALYGLS 129
                 4555566667777777777799**********999***************************77777777777757777.44255559*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfs 131
                 +ga++++++  ia+++  +e g+ igll++ +s
  CDO68087.1 130 SGAFNALIVPCIAQISDIREIGMRIGLLYSIIS 162
                 ****************************99876 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.4   1.2e-05      0.11      41     149 ..      30     144 ..       8     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.2e-05
     DUF2070  41 illfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall.qalvllalvlslalvfalrllvlvavsdesllkavlpaliqp 138
                 +ll++ + +v+f l++p+  i++    +    + ++  + ++ + s+++ ++ a +  a+  +al++ +a+ ++ + l+l++++++ l++ ++ a+++ 
  CDO68087.1  30 LLLVIGSCFVSFGLFTPFCYIVSYATAHGVDPTTSFYVLAMLNLASVFGRIAPAHFaDAFGRFALLVPCAFLAGASSLILWSTAQT-LTQLMAYAALYG 127
                 455666799********9999877755555555566556666665555655555555999************************98.666777777788 PP

     DUF2070 139 llailllvly......f 149
                 l++ ++  l+      +
  CDO68087.1 128 LSSGAFNALIvpciaqI 144
                 87777777764555441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1180.85
//
Query:       CDO68088.1  [L=381]
Description: hypothetical protein BN946_scf184788.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-11   44.6   1.9    3.5e-11   44.1   1.9    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   1.9   1.9e-15   3.5e-11       1     217 [.      25     370 ..      25     373 .. 0.55

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.9e-15
                    EEEE--.GC...............G...C...HHHHHHHHCCT.CEEEEE--TTS.T...............S-GGCS..........--HHHC.. CS
  Abhydrolase_6   1 vlllHG.agss..........assW...l...vapLaallaag.vhvlapDlpGh.G...............rsdppp..........ldledl.. 50 
                    ++llHG +++s          +  +   +   ++ L +l+++  v+++ + ++ + G               +                    +  
     CDO68088.1  25 LILLHGySWHSgqyavnlattPPNFndlYagiFSKLIPLAGKYnVRIVLVNRRDYpGskplteaerallpssS----LettndatqleI----Alk 112
                    79****43322333333333322223221123335566666667899********995555555544443220....122222222221....133 PP

                    ......HHH.HHHHCCTT................TTSEEEEEETCH.HHHHHHHHHCC.............EE.EEES-....----TTTS----T CS
  Abhydrolase_6  51 ......adl.aalldelaa..............gggpvvlvGHSlG.Galalaaapla...........lvvg.vlldppp..talpagllaaale 110
                          +d  ++l d l++              ++g +vl G+S+G G++ +++a +a            +++ v+ldpp   + + ++  +++ +
     CDO68088.1 113 nmetfmRDRaRELYDFLVQvvrdgntpapdtenNTGGIVLAGWSFGtGLITAFLANVAsfpttdiklgdYIRRvVFLDPPHhvL-GYPLPDDPYNP 207
                    3333333333555555555777788899999999999*********888999999999**********955556*****88853.33333455555 PP

                    THHHHHHTT-C....CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC............................E CS
  Abhydrolase_6 111 lllallallrl....lawlsreplprlfladedadaawrarlarlaallaglgllpaaawadlpvpl............................l 174
                    l++++++++ +      w+s++     + ++++  ++  +r ++l++  + l +l+++++a+++++                             l
     CDO68088.1 208 LFDPAIPPEERerafTNWVSGY-----YAHGNT--PDALERKTPLQDPPPTLSTLTPEDIARTLSLGpgapggsdalllhfgiklglyeplrkgaL 296
                    5554444333323337887643.....333333..4444444444444444444445555555555555555555544444444444344344332 PP

                    EECTT-C...........................HHHHCHHCCCH....STTEEETCE...SSS-HHHHSH.HHH CS
  Abhydrolase_6 175 vlggeDp...........................lvprllerlla....qagarlpvvlpgaGHlphleep.dev 217
                     l ++D+                           ++ r le++ a    ++  rl v +++a H+++ ++p +++
     CDO68088.1 297 YLPTADQggnalqnvevryvscersvwempwgtlHLERELEEARAkglpLRNIRL-VFVRDANHFVQWDKPeHAL 370
                    2235555555555555555554445566666666555556666666667777777.***************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2839.38
//
Query:       CDO68089.1  [L=220]
Description: hypothetical protein BN946_scf184788.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1670.32
//
Query:       CDO68090.1  [L=529]
Description: hypothetical protein BN946_scf184788.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.045   13.4   1.3      0.078   12.6   1.3    1.3  1  YkyA          Putative cell-wall binding lipoprotein
       0.12   11.5   1.2       0.24   10.5   1.2    1.4  1  FH2           Formin Homology 2 Domain
       0.12   12.5   0.2       0.21   11.7   0.2    1.3  1  MnmE_helical  MnmE helical domain
       0.13   12.7   6.7       0.28   11.7   6.7    1.6  1  FlgN          FlgN protein
       0.14   11.0   4.4       0.21   10.4   4.4    1.1  1  Spc7          Spc7 kinetochore protein
       0.45    9.8   1.8       0.72    9.1   1.8    1.2  1  CorA          CorA-like Mg2+ transporter protein
        0.6   10.2   6.4        1.3    9.1   6.4    1.5  1  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
        1.6    8.8   3.4         59    3.7   3.4    2.4  1  DUF1515       Protein of unknown function (DUF1515)
        1.9    8.9   4.7        4.4    7.7   4.7    1.6  1  DUF4200       Domain of unknown function (DUF4200)
        7.8    7.1   9.9          3    8.4   3.0    2.5  2  HSCB_C        HSCB C-terminal oligomerisation domain


Domain annotation for each model (and alignments):
>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.3   4.3e-05     0.078      27     119 ..     230     331 ..     224     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
        YkyA  27 LtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeieei.........edeelkkeaeelieameeryea 116
                 L++l +  +el + + + + + +  i+++ + al+ + +R + le e + + e  +  e+++e  +++           +  + +++++ ++m+ r +a
  CDO68090.1 230 LNRLNERTEELQDALHTPDEESLAHIQEETQLALDAAVKRIDSLEREMQGLREGLKRSEQLREVCDDLseilgdverATKRNERKTDTMRSTMNARLAA 328
                 889999999******9999999*******************************9999999999988887779888654556778899999999999988 PP

        YkyA 117 ydk 119
                 +++
  CDO68090.1 329 FEA 331
                 875 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   0.00013      0.24     265     344 ..     250     325 ..     227     339 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                 HHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 265 seLknvkkaakvnleslekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakelvkel 344
                 + L ++++ +++ l++ +k ++ le++++ l++ l++se+      ++++ l+e+l + e+  k+ e++ +++++++++ 
  CDO68090.1 250 ESLAHIQEETQLALDAAVKRIDSLEREMQGLREGLKRSEQ----LREVCDDLSEILGDVERATKRNERKTDTMRSTMNAR 325
                 679*************************************....666777777777777777666666666666666554 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00012      0.21     119     193 ..     235     305 ..     204     308 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                   xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 119 egieeLeeaikeleleei.eeeplltnaRhkealekalealeeakealeaglpldlv.aedLrealeaLgeItGevv 193
                   e  eeL++a+++       ee+   +++  + al +a++ +++++++++    + l  +e+Lre ++ L+eI+G+v+
    CDO68090.1 235 ERTEELQDALHT-----PdEESLAHIQEETQLALDAAVKRIDSLEREMQGLR-EGLKrSEQLREVCDDLSEILGDVE 305
                   345566666622.....135678889999999*********97777766554.55557****************986 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.7   0.00016      0.28      16     130 ..     228     331 ..     219     350 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FlgN  16 elleeLlelleeEteaLkagdieaLeelleekqellekleqleqkrakllaelglsaeeatlsellakeedeelkelwqelkelleelkelnelNgrli 114
                 +ll++L e +ee ++aL++ d e+L ++ ee q  l++  +  + +++ ++ l ++         l+    e+l+e++++l+e+l ++ ++ ++N+r +
  CDO68090.1 228 HLLNRLNERTEELQDALHTPDEESLAHIQEETQLALDAAVKRIDSLEREMQGLREG---------LK--RSEQLREVCDDLSEILGDVERATKRNERKT 315
                 68999999999**********9******9999998888888777777777777777.........76..99*************************999 PP

                 HHCCHHHHHHHHHCCH CS
        FlgN 115 eqslefnqrllnllqg 130
                  +  ++ +  l+++ +
  CDO68090.1 316 DTMRSTMNARLAAFEA 331
                 9888888887777765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.4   0.00012      0.21     136     241 ..     229     338 ..     226     357 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
        Spc7 136 llegLkegleenleglee.dkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid..keeLeelreelaelkaeieekkk.elaelqeqle 230
                 ll+ L e+ ee  ++l + d+e L++ +ee + +l++ +++ ++le+e++ l+e  +  e++    ++L e+  +++++ +  e+k + + ++++++l+
  CDO68090.1 229 LLNRLNERTEELQDALHTpDEESLAHIQEETQLALDAAVKRIDSLEREMQGLREGLKRSEQLRevCDDLSEILGDVERATKRNERKTDtMRSTMNARLA 327
                 666666666666666654488999999999999999999999999999999999666633322223344444444444444444333202233333333 PP

        Spc7 231 eleekieelke 241
                 + e+ + +l+e
  CDO68090.1 328 AFEAGLVQLEE 338
                 33333333333 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.8    0.0004      0.72     125     225 ..     228     325 ..     198     330 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0004
        CorA 125 ellekleeeldeledel..edstkkeilrelaqlrrr.lvklrralapnrevlkrllakaddkllddedkeylrdlldeler....llemlealrerle 216
                 +ll  l+e+++el+d l   d+++  +++e +ql  + +vk  ++l + ++ l + l+       +++    lr++ d+l+     +++ ++   ++++
  CDO68090.1 228 HLLNRLNERTEELQDALhtPDEESLAHIQEETQLALDaAVKRIDSLEREMQGLREGLK------RSEQ----LREVCDDLSEilgdVERATKRNERKTD 316
                 6788999999999999988888888888888888866466667777777776654444......3333....444444444411114444444445555 PP

        CorA 217 slqdtyssl 225
                  +++t++++
  CDO68090.1 317 TMRSTMNAR 325
                 555554444 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.4   0.00074       1.3       6     112 ..     233     340 ..     229     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00074
  TPR_MLP1_2   6 leeeikslkeekee.aeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                 l+e  ++l++  +   e+ l+++qe+ +   + a +  ++ ere++   e +k  ++lre +++l + + +++ + ++ + + ++ ++ ++ +  ++e 
  CDO68090.1 233 LNERTEELQDALHTpDEESLAHIQEETQLALDAAVKRIDSLEREMQGLREGLKRSEQLREVCDDLSEILGDVERATKRNERKTDTMRSTMNARLAAFEA 331
                 55566666655554146678899999999999999**************************************************************** PP

  TPR_MLP1_2 104 elselekri 112
                  l +le+r+
  CDO68090.1 332 GLVQLEERR 340
                 ******997 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.4     0.033        59       9      33 ..     269     293 ..     262     342 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.033
     DUF1515   9 qlgtllaevkelredlkrsedrsda 33 
                 ++++l +e++ lre lkrse+  ++
  CDO68090.1 269 RIDSLEREMQGLREGLKRSEQLREV 293
                 5677888888888888866664433 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.7    0.0024       4.4       9      96 ..     257     340 ..     253     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0024
     DUF4200   9 fevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlksei 96 
                 +e+q+al+a+ + i  le++++  +e l+++e +l+e    + + l + ++ ++r ++k+++ r     ++a ++ ++a +++l++++
  CDO68090.1 257 EETQLALDAAVKRIDSLEREMQGLREGLKRSE-QLREVCDDLSEILGDVERATKRNERKTDTMR---STMNARLAAFEAGLVQLEERR 340
                 799*************************9876.699*********************9998754...455555555555555555555 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.0    0.0017         3      11      58 ..     235     280 ..     229     288 .. 0.85
   2 ?    2.0   0.9      0.17   3.1e+02      16      62 ..     304     349 ..     280     357 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
                 HHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH CS
      HSCB_C  11 elrEeleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaa 58 
                 e  Eel++a ++ d+e l+ +++e +  +++ +++++++  +++++ +
  CDO68090.1 235 ERTEELQDALHTPDEESLAHIQEETQLALDAAVKRIDSL--EREMQGL 280
                 5679*********************************98..3455555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.17
                 HHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH CS
      HSCB_C  16 leeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadll 62 
                 +e a  ++++ + + +++ +++r+++ ea l ++ e+++ + aa ++
  CDO68090.1 304 VERA-TKRNERKTDTMRSTMNARLAAFEAGLVQLEERRRRDIAAIEA 349
                 3334.344557777777777777777777777775444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 3817.06
//
Query:       CDO68091.1  [L=297]
Description: hypothetical protein BN946_scf184788.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   24.7   3.6    1.5e-05   24.4   3.6    1.1  1  STE3      Pheromone A receptor
  ------ inclusion threshold ------
       0.17   11.7   0.0        2.3    8.1   0.0    2.2  2  DUF1391   Protein of unknown function (DUF1391)


Domain annotation for each model (and alignments):
>> STE3  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   3.6   1.6e-09   1.5e-05     191     281 ..       7      96 ..       1      98 [. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.6e-09
        STE3 191 lnksrflRLlalalliilltlplsiyllvsnltqsp.lqpwys..weevhadfstilkvpasewkasskevsalelnrwilvvlailfflfFGf 281
                 ++   f+R l+++++i l+++ ++i+++   l ++  lq w    w++vha+ s++  +pa +  +    +++l  ++w++++++++f+ + G+
  CDO68091.1   7 MSALAFIRPLVISVSISLISMSTTIFSVTAHLVSVGgLQAWATesWAQVHAETSQVFVIPATSRII----LQSLAADWWAVPAYTFVFVSMTGL 96 
                 666789*************************98777788886445**************9884444....699999************988776 PP

>> DUF1391  Protein of unknown function (DUF1391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.04   3.6e+02      35      45 ..     105     115 ..      90     117 .. 0.80
   2 ?    8.1   0.0   0.00026       2.3       6      33 ..     177     206 ..     173     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.04
     DUF1391  35 ktetGarrWLe 45 
                 kt    rrWL 
  CDO68091.1 105 KTYGSVRRWLR 115
                 778889***96 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00026
     DUF1391   6 GnnesLvCGvfPnqDGtft..amtytkskt 33 
                 G  e+ + G  P qD tf+   m y  s t
  CDO68091.1 177 GPSETTIAGSNPEQDDTFArsTMRYVESPT 206
                 7789999***********633688888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2132.71
//
Query:       CDO68092.1  [L=452]
Description: hypothetical protein BN946_scf184788.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3321.47
//
Query:       CDO68093.1  [L=228]
Description: hypothetical protein BN946_scf185044.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.26   10.7   2.8       0.57    9.6   2.5    1.7  2  Mucin15   Cell-membrane associated Mucin15


Domain annotation for each model (and alignments):
>> Mucin15  Cell-membrane associated Mucin15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3     0.014   2.6e+02     103     165 ..     119     185 ..      75     188 .. 0.64
   2 ?    9.6   2.5   3.2e-05      0.57     214     253 ..     179     222 ..     127     225 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.014
     Mucin15 103 lnssiadenllpvsahpnatsavssekftssl....andtlktPdnssitvsilpsaptttsvtplv 165
                 l    +d + +++ +  na+s++s + +tss+        ++ P+  s+   ++ +a  + s tp +
  CDO68093.1 119 LQGKWLDVDYITFTTAFNASSTASIGTVTSSPpwlaGTSSTTVPSPPSTQGPTFKAASSSSSKTPTI 185
                 5555566677777777788888888888888766653444555666666666666666666666655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 3.2e-05
     Mucin15 214 nrntGvvfGaiLGaiLGasLLsLvGYll....CGkrktdsfshR 253
                 +  t  +  a+ Gai+G  +Ls++ Y++     Gkrk d+ s R
  CDO68093.1 179 SSKTPTILAALFGAIIGLLILSVIAYIFlrrkVGKRKGDADSLR 222
                 456778999*****************984555699999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1590.70
//
Query:       CDO68094.1  [L=806]
Description: hypothetical protein BN946_scf185044.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-06   27.1  15.9    0.00024   21.4   1.6    3.2  3  zf-C2H2    Zinc finger, C2H2 type
    0.00033   21.3   9.9       0.08   13.8   2.0    3.1  2  zf-C2H2_4  C2H2-type zinc finger
     0.0012   19.2   3.4     0.0012   19.2   3.4    2.5  3  zf-H2C2_2  Zinc-finger double domain
  ------ inclusion threshold ------
        2.6    7.9   5.2        5.4    6.9   1.0    2.5  2  zf-H2C2_5  C2H2-type zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.6   5.4e-08   0.00024       1      23 []      41      66 ..      41      66 .. 0.97
   2 !   14.7   1.8   7.1e-06     0.032       5      23 .]      75      94 ..      72      94 .. 0.95
   3 ?   -3.2   0.3       3.3   1.5e+04      13      23 .]     542     553 ..     541     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.4e-08
                EEET...TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCp...dCgksFkrksnLkrHirtH 23
                ++C    +C ++F+r+++L rHir+H
  CDO68094.1 41 FQCRgygECRMVFSRSEHLARHIRKH 66
                8999999******************9 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.1e-06
                TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  5 dCgksFkrksnLkrHirt.H 23
                +Cgk F+r +nL++H +t H
  CDO68094.1 75 HCGKQFSRLDNLRQHAQTvH 94
                8****************999 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.3
                 HHHHHHHHHC.C CS
     zf-C2H2  13 ksnLkrHirt.H 23 
                 +s+ ++H+++ H
  CDO68094.1 542 WSSATTHLQMqH 553
                 788899*99988 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.2   0.00015      0.69       1      23 [.      41      66 ..      41      67 .. 0.86
   2 !   13.8   2.0   1.8e-05      0.08       2      24 .]      73      94 ..      72      94 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
   zf-C2H2_4  1 fkCpi...CgksFsskkaLlrHlkth 23
                f+C+    C+ +Fs++++L rH+++h
  CDO68094.1 41 FQCRGygeCRMVFSRSEHLARHIRKH 66
                56666666*****************9 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.8e-05
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkthH 24
                 C +Cgk Fs+ ++L++H +t+H
  CDO68094.1 73 SC-HCGKQFSRLDNLRQHAQTVH 94
                56.******************99 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         1   4.6e+03      13      25 ..      39      54 ..      34      55 .. 0.81
   2 !   19.2   3.4   2.6e-07    0.0012       1      24 [.      58      80 ..      58      82 .. 0.84
   3 ?   -3.5   0.1         4   1.8e+04       1       9 [.      85      94 ..      85      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
   zf-H2C2_2 13 kpyeCp...lCdkaFk 25
                k ++C    +C+ +F+
  CDO68094.1 39 KTFQCRgygECRMVFS 54
                5699999999999997 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.6e-07
   zf-H2C2_2  1 nLrrHirkHtgekpyeCplCdkaF 24
                +L rHirkHtge+p+ C  C+k F
  CDO68094.1 58 HLARHIRKHTGERPFSCH-CGKQF 80
                699**************4.66666 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4
   zf-H2C2_2  1 nLrrHirk.H 9 
                nLr+H  + H
  CDO68094.1 85 NLRQHAQTvH 94
                89***87536 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.0    0.0012       5.4      15      26 .]      58      68 ..      54      68 .. 0.84
   2 ?    2.4   0.2      0.03   1.3e+02      14      24 ..      84      94 ..      81      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
   zf-H2C2_5 15 nLkRHlrrkHtg 26
                 L RH+r kHtg
  CDO68094.1 58 HLARHIR-KHTG 68
                699****.***8 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.03
   zf-H2C2_5 14 snLkRHlrrkH 24
                +nL++H +++H
  CDO68094.1 84 DNLRQHAQTVH 94
                69********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2572  (0.143455); expected 358.6 (0.02)
Passed bias filter:                      848  (0.0472977); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.05u 0.38s 00:00:01.43 Elapsed: 00:00:00.54
# Mc/sec: 4528.37
//
Query:       CDO68095.1  [L=603]
Description: hypothetical protein BN946_scf185044.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4106.51
//
Query:       CDO68096.1  [L=291]
Description: hypothetical protein BN946_scf185044.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0002   21.8   0.0    0.00031   21.2   0.0    1.3  1  DBR1           Lariat debranching enzyme, C-terminal domain
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.021   15.0   0.0    1.5  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> DBR1  Lariat debranching enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.5e-08   0.00031     116     139 .]     255     278 ..     241     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.5e-08
        DBR1 116 keqpkeytNpQteafcellgienk 139
                  +   +y+NpQt+afc++l+ienk
  CDO68096.1 255 GGGAPYYPNPQTAAFCAMLQIENK 278
                 455689****************96 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.3e-06     0.021       1      62 [.      17     102 ..      17     130 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-06
  Metallophos_2   1 MklaiiSDlHsnldaleav...lealkevgvdaiihaGDl.eeeep............evleellela........pvlaVrGNnD 62 
                    Mk+ai  + H++lda+ a    le+ ++ +vd+++++GD+   ++p            + l ++ + +          l++ GN++
     CDO68096.1  17 MKIAIEGCCHGELDAIYAEiarLEQQNAYAVDLLLVCGDFqAVRNPrdlasmavpdkyKRLGAFAKYYtgeakapiLTLVIGGNHE 102
                    9*********66666655512266666789*********86556665555555554443444444443555555444566777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2050.03
//
Query:       CDO68097.1  [L=330]
Description: hypothetical protein BN946_scf185044.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-29  102.0   0.0    1.5e-25   90.5   0.0    2.2  1  Brix      Brix domain
  ------ inclusion threshold ------
        3.1    8.5   7.2         14    6.5   0.2    2.8  2  IMUP      Immortalisation up-regulated protein


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   1.6e-29   1.5e-25       1     193 []      35     230 ..      35     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 1.6e-29
                 BTT--HHHHHHHHHHHHHCTTSEEEEEEECT.-TTTHHHHHHH-HHHHHHHHHCTCSEEEEEE..S.STTE............EEEEEEEECECTGGGS CS
        Brix   1 grktssrlrqllkdlrslmkphtasflkrns.nklkdlvelagvthlellsekndcslfvfelskk.rPng............ptlefkvenyslmkdl 85 
                 g++t ++++ ++k+l++l++ph++sf k+n  ++++d      +++le++++knd+slf+++ s+k rP+g            + +e++v+ +++m+d+
  CDO68097.1  35 GTHTGQKVNGAMKELMALKRPHAISFAKKNLvRPFED------TSSLEFWAQKNDASLFLLGQSTKkRPDGltfvrmfdyrvlDIIEVGVDMFKSMNDF 127
                 5788999*********************9999*****......9***************************9999888888888888888888888888 PP

                 TTTSTS-TT---EEEEES.HHHHHHHHHHHHHH.....SEEEG..-B-GG-SEEEEEEES.........CCTT.....................T.ECE CS
        Brix  86 kkakktefgsrPllvfngkenfkllksllqdlFr...vpkislkspklsglrrvvlftaae........nqet.....................d.kti 151
                 k                       lks+l d+F+    ++i l     +g+++v+++++ +        +  t                     + +++
  CDO68097.1 128 K-----------------------LKSMLIDFFNgevIDQICL-----AGIEHVISISLGPpaslnattT--TlqaqpsssasasapsdssdpaSlPKV 196
                 5.......................789******9888888888.....9*********876777866550..15555566667777778888984468* PP

                 EEEEEEEEEE..STTTTECT..T..EEEEEEESEEEEEEEEE CS
        Brix 152 sfRhYaiklkksgkklpnlekekkerveLeEiGPrfdLklrk 193
                 ++R Y+i+l +sg+++p        rveL+ +GP +dL lr+
  CDO68097.1 197 HIRGYTIRLLASGTRIP--------RVELTPMGPFIDLSLRR 230
                 *****************........***************97 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0015        14      48      73 ..     172     197 ..     158     207 .. 0.74
   2 ?    3.6   2.1     0.011     1e+02      85     106 ..     241     262 ..     231     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0015
        IMUP  48 hgkssssdsssssssssdsdaeakph 73 
                 + + sss s+s+ s+ssd  +  k+h
  CDO68097.1 172 QAQPSSSASASAPSDSSDPASLPKVH 197
                 45678888888889999987777766 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.011
        IMUP  85 dkvkkPkvkkekkkkekekkea 106
                 + +k+Pkv+k+  +k+ +kk++
  CDO68097.1 241 QALKRPKVRKQEVEKGLGKKRK 262
                 568************9988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2406.37
//
Query:       CDO68098.1  [L=92]
Description: hypothetical protein BN946_scf185044.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 720.64
//
Query:       CDO68099.1  [L=248]
Description: hypothetical protein BN946_scf185044.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.7   0.0       0.22   11.8   0.0    1.8  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.2e-05      0.22      34      73 ..      53     101 ..      51     108 .. 0.81
   2 ?   -1.5   0.0      0.16   2.9e+03      87     106 ..     159     178 ..     149     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.2e-05
                 -HHHHHHHTST........TTTTCCCE.EEEETTSGHHHHHHHHHHHHH CS
         BTB  34 SpyFkalftsk........eieessvs.eielddvepeafealLefiYt 73 
                 S +F++lf           e++e++++ + + +dv++ +f++lL++++ 
  CDO68099.1  53 SVFFRELFYASkakkhgrgEDQERTKQlRFKSEDVSAADFRNLLRVLFK 101
                 889*****99988888876434444337999**************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.16
                 HHHHHHHHT-HHHHHHHHHH CS
         BTB  87 lLaaadllqiprlkkaceef 106
                  La+a +++ip + +a+e +
  CDO68099.1 159 RLAVAVRYDIPGMYEALEGI 178
                 4677799****999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1884.37
//
Query:       CDO68100.1  [L=266]
Description: hypothetical protein BN946_scf185044.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00021   21.5   0.0    0.00033   20.9   0.0    1.3  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-08   0.00033       5     107 ..      34     146 ..      31     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.8e-08
                 HHHTTTS.-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.......TTTTCCCEEEEETTSGHHHHHHHHHHH....HHSEEEC-CGGGHHHHHHHH CS
         BTB   5 resgelc.DvtlvvgdgkefkahkavLaarSpyFkalftsk.......eieessvseielddvepeafealLefi....YtgeleitseenleelLaaa 91 
                 r+s+ +c D++++v+ +  fk+ +      S+ F + ++          + +s+v+ ++l+ v++e+f+alL ++    Y ++ ++t +++  ++L++a
  CDO68100.1  34 RDSEFYCrDIVFLVE-NVLFKVSRRPFEDESNAFGSTIKLPpenghlhAEGTSDVNPLPLPGVTAEEFKALLYVLfplsYGARQPLT-KDQWLSVLKLA 130
                 67777777*******.6*********************999999999977888888******************9888999999998.9********** PP

                 HHHT-HHHHHHHHHHH CS
         BTB  92 dllqiprlkkaceefl 107
                 d++ ++++ +++ e l
  CDO68100.1 131 DMWVFDEVRAKAIEEL 146
                 *******999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1810.84
//
Query:       CDO68101.1  [L=113]
Description: hypothetical protein BN946_scf185044.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.8   0.2        0.4   10.5   0.1    1.7  2  DUF746    Domain of Unknown Function (DUF746)


Domain annotation for each model (and alignments):
>> DUF746  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   2.2e-05       0.4      34      57 ..      19      42 ..      16      47 .. 0.89
   2 ?   -2.2   0.0      0.21   3.8e+03      35      45 ..      78      88 ..      72      89 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.2e-05
      DUF746 34 reFrewllqLDPSGqleariRLgv 57
                ++F++ +  + P+G++  r RL+ 
  CDO68101.1 19 ARFIRCITGHAPTGHYRDRFRLRH 42
                789*******************85 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.21
      DUF746 35 eFrewllqLDP 45
                   e+l  LDP
  CDO68101.1 78 SIEEFLQSLDP 88
                45678888998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 757.93
//
Query:       CDO68102.1  [L=446]
Description: hypothetical protein BN946_scf185044.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-11   43.1   0.1    1.7e-10   41.7   0.0    1.8  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   9.3e-15   1.7e-10       2      96 .]     132     224 ..     131     224 .. 0.78
   2 ?   -2.9   0.0      0.77   1.4e+04      31      49 ..     254     273 ..     244     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 9.3e-15
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE.................---TT-E..EEEE-..B-TEEE--B.-SS- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk.......eavkikpkkgrl..vlFesdellpHevlpvtkgge 87 
                     ++++yg+g ++kpH D+    ++s+++  ++++ L   ++++GG+l l++++k       +   ++ + +r+  v+F+sd    Hev+pv + g+
      CDO68102.1 132 KLNVYGHGAFFKPHLDT----PRSEDMFGSLVVVLL--TPQQGGDLILRHEEKewtfrsdQ--LLAGQSDRIafVVFFSDVE--HEVMPVLS-GH 215
                     789*************8....5678999**999994..6789******8887788776332..2222333335599***866..******76.5* PP

                     EEEEEEEEE CS
  2OG-FeII_Oxy_3  88 Rlsltgwir 96 
                     R++lt++++
      CDO68102.1 216 RVTLTYNLH 224
                     *****9886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.77
                     EEEEEE....E.T-B--EEE CS
  2OG-FeII_Oxy_3  31 tvllyLnekes.eeGGelel 49 
                     ++l yL+++e  ++GG l +
      CDO68102.1 254 ALLAYLSNPEVlTNGGTLGF 273
                     57789976444688998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3352.42
//
Query:       CDO68103.1  [L=461]
Description: hypothetical protein BN946_scf185044.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-08   35.9   2.1    1.3e-08   35.6   0.2    2.1  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    0.00094   19.8   0.0     0.0018   18.9   0.0    1.5  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.2   1.5e-12   1.3e-08       2      96 .]     150     245 ..     149     245 .. 0.80
   2 ?   -0.7   0.1      0.31   2.8e+03      11      19 ..     302     310 ..     295     430 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.5e-12
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE.....................---TT-EEEEE-..B-TEEE--B.-S CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk...........eavkikpkkgrlvlFesdellpHevlpvtkg 85 
                     ++++yg+g+++k H D+    ++s  + ++++l +  +++++GG+l +++  +           ea++++p     v+F+sd    Hev +v + 
      CDO68103.1 150 KLNVYGKGCFFKSHKDT----PRSTAMFASLVLIF--PTEHSGGQLIMRHGGRewtfdaasvlaEARHLEPHI-AYVAFFSDVE--HEVARVDS- 234
                     6899************8....5668899*******..5789*******7777799997777665555555543.4478888655..******66. PP

                     S-EEEEEEEEE CS
  2OG-FeII_Oxy_3  86 geRlsltgwir 96 
                     g+Rls+t++++
      CDO68103.1 235 GHRLSITYNLH 245
                     5******9986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
                     EEEEE-SS- CS
  2OG-FeII_Oxy_3  11 eykpHvDnf 19 
                     +++pH D++
      CDO68103.1 302 HFDPHEDKT 310
                     567777754 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     2e-07    0.0018       3      89 ..     151     241 ..     149     245 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2e-07
  2OG-FeII_Oxy_4   3 vssYekgdvllnHdDvlege.RrvayilyleeeWkeddGGaLlls.......ddegdv...tksivPkwnqlvlFevkeshsvaevasvaekeRl 86 
                     +++Y kg+++  H+D+  ++  +++++l +    +e+ GG+L ++        d+++v   ++++ P+   +++F+   +h+va+v s    +Rl
      CDO68103.1 151 LNVYGKGCFFKSHKDTPRSTaMFASLVLIFP---TEHSGGQLIMRhggrewtFDAASVlaeARHLEPHIAYVAFFSD-VEHEVARVDS---GHRL 238
                     799*************755514444555554...56789999877333333211223345588************75.7899888774...7899 PP

  2OG-FeII_Oxy_4  87 sis 89 
                     si+
      CDO68103.1 239 SIT 241
                     998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3138.32
//
Query:       CDO68104.1  [L=668]
Description: hypothetical protein BN946_scf185044.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-41  140.2   0.0    3.9e-17   62.5   0.0    3.1  3  Pkinase          Protein kinase domain
    6.4e-13   48.6   0.3    8.2e-05   22.0   0.1    3.4  3  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
       0.24   11.0   0.1       0.47   10.0   0.1    1.4  1  RIO1             RIO1 family
       0.33    9.9   0.0       0.48    9.3   0.0    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.8e-08     8e-05       1      55 [.      30      81 ..      30      86 .. 0.90
   2 !   51.9   0.0   1.5e-17   6.8e-14      58     135 ..     110     193 ..     103     218 .. 0.83
   3 !   62.5   0.0   8.7e-21   3.9e-17     135     264 .]     404     567 ..     398     567 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.8e-08
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHH CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkkl 55
                y++++klG G f++V  a++++ +++vA+K++k   +     +++l Eik+l++l
  CDO68104.1 30 YVVVRKLGWGHFSTVWLAKDTKMNRHVALKIVKSAPRYT---ETALDEIKLLQRL 81
                67899***************************9997776...568*******997 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 1.5e-17
                 TTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH..HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTT CS
     Pkinase  58 pnivrlyevfee....kdelylvleyveggeladlle..rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekg 135
                 ++++ +++ f++     +++++v+e++ ++ l  l++  +++ ++++ +k+iakqil gl+y+H + g+iH DlKpeN+Li+ ++
  CDO68104.1 110 SHVISFLDHFRHkgpnGTHVCMVFEVLGEN-LLGLIKrhQNKGVPMHLVKQIAKQILLGLDYMHrCCGVIHTDLKPENVLISIDD 193
                 689999999998888889********9966.777777566677*********************7778*************9444 PP

  == domain 3  score: 62.5 bits;  conditional E-value: 8.7e-21
                 TEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHT CS
     Pkinase 135 gelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeas 231
                   +Ki+D+G a+ +e++  +t+ + t++Y+ PEv+ + + ++++D+Ws+++i++el+tg   + +  + ++++k+ d++ +i++++g  +  ++++   
  CDO68104.1 404 ITVKIADLGNATWVEHH--FTDDIQTRQYRCPEVILGAKWGPSADIWSVACIIFELITGGDYLFDPASGSRYSKDDDHIAQIIELMGefP--KSIAFSG 498
                 469*********99995..7**************************************99888878888899999999999999999552..3433333 PP

                 TS....................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 232 ei....................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 +                                      + + ++l+ +l+  p kR  a+el++h +l
  CDO68104.1 499 KYssdffnrrgelrhiqklrfwpldavlhdkyllpkeeADMIASFLNPMLRLHPDKRAKASELIHHAWL 567
                 3355789999*************************99888899*************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00011      0.47       4      58 ..      33      81 ..      30      86 .. 0.83
   2 !   22.0   0.1   1.8e-08   8.2e-05      61     145 ..     110     198 ..     103     211 .. 0.80
   3 !   12.9   0.0   1.1e-05     0.048     139     203 ..     403     462 ..     401     481 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00011
                 EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS CS
  Pkinase_Tyr  4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl 58
                  +klG G+f++V+ ++ +    k + +Va+K++k+  + +  e  l+e+k++++l
   CDO68104.1 33 VRKLGWGHFSTVWLAKDT----KMNRHVALKIVKSAPRYT--ETALDEIKLLQRL 81
                 689***********9988....8999*******7665555..7889999999876 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.8e-08
                  TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE- CS
  Pkinase_Tyr  61 pnivkllgvctkeep....llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkis 145
                   +++++l    +++p    +++v+e + + +Ll  +++++++ + ++ + ++a q+  G++y+++   ++H dl   NvL+s ++v  + 
   CDO68104.1 110 SHVISFLDHFRHKGPngthVCMVFEVLGE-NLLGLIKRHQNKGVPMHLVKQIAKQILLGLDYMHRCCgVIHTDLKPENVLISIDDVESVI 198
                  67888888887555555559999998865.899999999999**********************97449************988765555 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 1.1e-05
                  TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSS CS
  Pkinase_Tyr 139 nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlge 203
                  + +vki+D G a  +      ++ ++     ++  pE++   k   ++D+Ws + +++E++t g+
   CDO68104.1 403 KITVKIADLGNATWV-----EHHFTDDIQTRQYRCPEVILGAKWGPSADIWSVACIIFELITGGD 462
                  56899***9999999.....33334455566899****************************887 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0001      0.47      83     144 ..     131     194 ..     126     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
                 EEEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEE CS
        RIO1  83 lvmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkv 144
                 +v e +ge+ + + k ++ +    +  +++++++l  +  + +++g++H DL   Nvl++ d+v
  CDO68104.1 131 MVFEVLGENLLGLIKRHQNKgVpMHLVKQIAKQILLGLDYMHRCCGVIHTDLKPENVLISIDDV 194
                 56666665555555555555335667789999999999********************998854 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00011      0.48     279     315 ..     159     192 ..     145     205 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00011
  Pox_ser-thr_kin 279 fifLqiaLLyikiyelpdcenflhvDlkPdniLifds 315
                       i  qi L     y    c   +h+DlkP+n+Li  +
       CDO68104.1 159 QIAKQILLG--LDYMH-RCCGVIHTDLKPENVLISID 192
                      333333222..22444.466789**********9644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4531.69
//
Query:       CDO68105.1  [L=235]
Description: hypothetical protein BN946_scf185044.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 1438.82
//
Query:       CDO68106.1  [L=423]
Description: hypothetical protein BN946_scf185044.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-18   66.1   0.2    4.5e-15   55.9   0.2    2.4  1  Asp              Eukaryotic aspartyl protease
    2.6e-05   24.8   5.7     0.0057   17.3   1.3    3.5  3  Asp_protease_2   Aspartyl protease
    0.00018   22.0   0.8      0.081   13.5   0.3    3.4  3  gag-asp_proteas  gag-polyprotein putative aspartyl protease
  ------ inclusion threshold ------
      0.022   15.0   0.3       0.92    9.7   0.1    2.3  2  TAXi_N           Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.2     1e-18   4.5e-15       2     306 ..      15     329 ..      14     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1e-18
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgst 100
                 Y ++i++  + q+f+vi+DTGSsdl V+ +                     +k+++k+++++Y  g+ +G + + t ++gg tv++++f+e    ++  
  CDO68106.1  15 YQANITL--SGQQFNVIIDTGSSDLTVTGTVPG------------------AKDTSKTAEVTYDVGTTQGPIKTATLEFGGYTVEDLAFIEQPVDST-- 91 
                 5555555..689*************99887655..................57888999******************************99766666.. PP

                 HTTSSSSEEEE-S-GGGSCGG.......SCCHHHHHHHTTSSSSSEEEEEE-S....TTSSEEEEEESSEEGG.GEEEEEEEEEESS.....TSSTEEE CS
                 xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.....xxxxxxx RF
         Asp 101 flaakfdGiLGlgfkeisvee.......atpvfdnlvsqglikepvfsvylnr....eeeeggeivfGgvDes.kykGsltyvpvts.....kgywqie 182
                   + +  Gi+Glg  + s ++         +v d ++ q+  + +  ++ l r    ++  +g ++ G v +      +   +pvt+      + w++ 
  CDO68106.1  92 --HQEGGGIMGLGPGNSSEVRyvlgqgaGDTVLDRIFRQNTTTPNFITILLGRagdpSDTFTGDLTIGEVVQPfGNITQQPKLPVTQtalrgGQHWTAL 188
                 ..56789******5444444468888877888999******************998878889****998754303334445678998888775557766 PP

                 EE........EEEETTEEEEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET.....TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEE CS
                 xx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 183 le........svtvggktvlcssgcqailDtGTsllalptsivekiakaigakkses.....egeyvvdCdslsslpdisftiggakitvpvselvlke 268
                 l+        +  ++++++++ ++++++ D+G s+  +p++i+++i   + +++ ++        +v+ C +   + +++f+++g+++ + + + v + 
  CDO68106.1 189 LDpngivgpdGQRINTTKTTSGNRYNVVFDSGYSFPQVPKDIADAIYGRVPGATLTTvkgiaGDVWVLPCTT---ELNVTFVFSGVQFPIHPLDTVTNA 284
                 5411111111334444444678999**********************9997776666566645568899995...999**************9999887 PP

                 S....SSTTSEEEESE...EECCTSSSEEEEHHHHTTEEEEEETT CS
                 x....xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 269 e....eseesqCilgl...vseeegdlwiLGdvFlrsayvvfdld 306
                 +    ++++ +C+ ++    ++  g   iLG  Flr+ay++ +++
  CDO68106.1 285 QglfdKHGNPTCFGAFqpyPFDAVGFDIILGMSFLRNAYILINFG 329
                 5333356779******665556677789***********987765 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.3   1.3e-06    0.0057       2      88 ..      18     101 ..      17     102 .. 0.75
   2 ?   -3.2   0.0       3.2   1.4e+04       9      25 ..     108     124 ..     105     132 .. 0.60
   3 !    7.3   0.0    0.0016       7.3       6      52 ..     209     254 ..     205     318 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.3e-06
  Asp_protease_2   2 pvtinGkpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrldslklggltlknvpalvld...lgeeidglLGm 88 
                     ++t+ G+ +++++DTG+s ++++ ++    g k ++++ +v++++    ++   ++  +l++gg t+++++++ ++    ++e  g++G+
      CDO68106.1  18 NITLSGQQFNVIIDTGSSDLTVTGTVP---GAKDTSKTAEVTYDV---GTTQGPIKTATLEFGGYTVEDLAFIEQPvdsTHQEGGGIMGL 101
                     57899*****************98776...555555433334333...45556666779**************99966656666688885 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.2
  Asp_protease_2   9 pvrfllDTGasttlisp 25 
                     +vr++l  Ga+ t++++
      CDO68106.1 108 EVRYVLGQGAGDTVLDR 124
                     45555556666666654 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0016
  Asp_protease_2   6 nGkpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevk 52 
                      G ++++++D+G s   ++++ a+++  +v + +  ++v+g+ g+v 
      CDO68106.1 209 SGNRYNVVFDSGYSFPQVPKDIADAIYGRVPGAT-LTTVKGIAGDVW 254
                     6899**********************87777765.677777777643 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   1.8e-05     0.081       2      74 ..      18      84 ..      17     101 .. 0.67
   2 ?    1.6   0.0      0.09     4e+02       6      31 ..     209     234 ..     205     261 .. 0.83
   3 ?    2.9   0.0     0.037   1.7e+02      82      92 .]     311     321 ..     302     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                     EEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEE CS
  gag-asp_proteas  2 kvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkiggielrnvsav 74
                     ++++ g+++++++DTG s+ +++ ++  +   s+   + +  v+t +g +++     +++++gg +++++ ++
       CDO68106.1 18 NITLSGQQFNVIIDTGSSDLTVTGTVPGAKDTSKTA-EVTYDVGTTQGPIKT-----ATLEFGGYTVEDLAFI 84
                     68999*****************98887665554444.345555555555544.....4566666666655554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.09
                      TTEEEEEEEETT-SS-EEEHHHHHHT CS
  gag-asp_proteas   6 ngkpvkflvDTGAsstiiseelaerl 31 
                       g+++++++D+G s   +++++a+++
       CDO68106.1 209 SGNRYNVVFDSGYSFPQVPKDIADAI 234
                      588999*************9999987 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.037
                      SEEEEHHHHHH CS
  gag-asp_proteas  82 dlLLGldfLkr 92 
                      d++LG++fL++
       CDO68106.1 311 DIILGMSFLRN 321
                      78*******96 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.016        71      10      27 ..      22      39 ..      15      50 .. 0.77
   2 ?    9.7   0.1    0.0002      0.92      72     147 ..      44     110 ..      38     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.016
      TAXi_N 10 ppqplklvvDtGsdltWv 27
                 +q++++++DtGs+ + v
  CDO68106.1 22 SGQQFNVIIDTGSSDLTV 39
                679*********975554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
      TAXi_N  72 sgsssstceyeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgklSlvs 147
                 +g ++++ ++e++y  d ++++G + t tl +     ++ +v++l+f  ++    +  ++  Gi+GLG g+ S v 
  CDO68106.1  44 PGAKDTSKTAEVTY--DVGTTQGPIKTATLEF-----GGYTVEDLAFIEQP--VDSTHQEGGGIMGLGPGNSSEVR 110
                 66788999999999..4559************.....899*******9887..344445579********998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2734.08
//
Query:       CDO68107.1  [L=363]
Description: hypothetical protein BN946_scf185044.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-36  124.0  13.0      3e-11   43.7   0.6    7.0  6  WD40          WD domain, G-beta repeat
      8e-14   51.7   0.1    1.2e-06   28.7   0.0    4.2  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    8.5e-09   34.6   1.1     0.0041   15.8   0.0    3.8  4  Nup160        Nucleoporin Nup120/160
     0.0014   17.6   0.0        2.6    6.9   0.0    3.1  3  PALB2_WD40    Partner and localizer of BRCA2 WD40 domain
     0.0058   15.2   0.1      0.016   13.7   0.0    1.7  2  Cytochrom_D1  Cytochrome D1 heme domain
     0.0097   14.9   0.2        6.8    5.6   0.0    3.1  3  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
  ------ inclusion threshold ------
       0.02   14.8   0.0       0.65    9.8   0.0    2.3  2  eIF2A         Eukaryotic translation initiation factor eIF2A
      0.065   13.2   1.1       0.13   12.3   1.1    1.5  1  LisH          LisH


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.4e-09     1e-05       5      38 .]      81     115 ..      78     115 .. 0.94
   2 !   21.4   0.1   1.5e-07   0.00033       2      38 .]     120     157 ..     119     157 .. 0.90
   3 !    8.1   0.1    0.0023       5.2       2      26 ..     163     188 ..     162     211 .. 0.73
   4 !   14.6   0.0   2.1e-05     0.047      24      38 .]     221     258 ..     197     258 .. 0.61
   5 !   43.7   0.6   1.3e-14     3e-11       1      37 [.     262     299 ..     262     300 .. 0.95
   6 !   13.4   0.1   4.9e-05      0.11      23      38 .]     347     362 ..     304     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.4e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +ltGH  +v+++ f+p  + l+s+sdD t ++Wd
  CDO68107.1  81 LILTGHrANVNAVTFHPLYSVLVSASDDSTMKVWD 115
                 5799**988*************************9 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.5e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ rt+ GH   v+++ +++ g++l+s+s D  +++Wd
  CDO68107.1 120 ELERTIQGHtRRVSDCEYDSKGKFLVSCSHDLFIKLWD 157
                 677999***555****************99*******9 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0023
                 EEEEEEESS.SSEEEEEEETTSSEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla 26 
                 +++ t++GH  s++ ++f p  + ++
  CDO68107.1 163 KNISTFRGHdHSISTVRFLPGDDRIT 188
                 6899*****555****9999988864 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.1e-05
                 E.......................EEEEETTSEEEEEE CS
        WD40  24 w.......................lasGsdDgtvriWd 38 
                                         +a++s+D++++iWd
  CDO68107.1 221 VpsiselaglkagatafedlsvafVATASRDQKIKIWD 258
                 45555555555555555555555499***********9 PP

  == domain 5  score: 43.7 bits;  conditional E-value: 1.3e-14
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 gqcl+tl GH ++v++l f+p+g++l+s+ dDg++riW
  CDO68107.1 262 GQCLHTLIGHdGWVHGLVFHPNGRYLLSAADDGSIRIW 299
                 79********877****************99******* PP

  == domain 6  score: 13.4 bits;  conditional E-value: 4.9e-05
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 + +a+G++D tv+iW+
  CDO68107.1 347 NVVACGCWDYTVKIWK 362
                 448999*********6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0038       8.5      37      81 ..      86     130 ..      80     135 .. 0.87
   2 !    6.3   0.0    0.0052        12      36      88 ..     127     179 ..     123     182 .. 0.82
   3 !    6.6   0.0    0.0042       9.3      52      77 ..     244     269 ..     240     273 .. 0.88
   4 !   28.7   0.0   5.5e-10   1.2e-06      37      91 ..     271     324 ..     269     325 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0038
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +  +v+++ ++p  ++L+ a +d+++++ d  +g++ ++++ ++ 
   CDO68107.1  86 HRANVNAVTFHPLYSVLVSASDDSTMKVWDWDTGELERTIQGHTR 130
                  56789******************************9888876655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesg.kvvhslsvksekavtclg 88 
                  ++ ++v++ ++  +gk+L+   +d  ++l d+ ++ k +++++ ++++ ++++ 
   CDO68107.1 127 GHTRRVSDCEYDSKGKFLVSCSHDLFIKLWDVDNEyKNISTFRGHDHS-ISTVR 179
                  567899999***********************9864677777777664.77665 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0042
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhsls 77 
                  + a a  d ++++ da +g+++h+l 
   CDO68107.1 244 FVATASRDQKIKIWDARTGQCLHTLI 269
                  6789999****************975 PP

  == domain 4  score: 28.7 bits;  conditional E-value: 5.5e-10
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  +d+ v++L ++p+g+ L  a +dg++r+ ++ +g++++++++++   v++l Wg 
   CDO68107.1 271 HDGWVHGLVFHPNGRYLLSAADDGSIRIWEIATGRCIRKVDTGER-FVSSLAWGR 324
                  67889**************************************99.6******86 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.2    0.0008       1.8     230     259 ..      99     128 ..      87     153 .. 0.79
   2 ?   -0.6   0.0      0.18     4e+02     231     250 ..     142     161 ..     136     169 .. 0.87
   3 !   15.8   0.0   1.8e-06    0.0041     231     255 ..     243     267 ..     231     272 .. 0.90
   4 !    7.1   0.0   0.00078       1.8     231     259 ..     285     313 ..     278     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0008
                 TTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclatidll 259
                 +++l+++s d +++vW+ +tg + +ti+  
  CDO68107.1  99 YSVLVSASDDSTMKVWDWDTGELERTIQGH 128
                 67999****************999997655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
                 TEEEEEETT-EEEEEETTTT CS
      Nup160 231 tylfalsrdgkLrvWnlltg 250
                 ++l++ s d ++++W++++ 
  CDO68107.1 142 KFLVSCSHDLFIKLWDVDNE 161
                 58999999*********985 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 1.8e-06
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                 ++++++srd+k+++W+ +tg+cl t
  CDO68107.1 243 AFVATASRDQKIKIWDARTGQCLHT 267
                 699********************98 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.00078
                 TEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclatidll 259
                  yl+++  dg +r+W ++tg+c++  d+ 
  CDO68107.1 285 RYLLSAADDGSIRIWEIATGRCIRKVDTG 313
                 6899999****************998876 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.062   1.4e+02     192     227 ..     101     135 ..      90     164 .. 0.79
   2 !    5.5   0.0    0.0031       7.1     192     216 ..     243     268 ..     206     277 .. 0.78
   3 !    6.9   0.0    0.0011       2.6     193     226 ..     287     320 ..     283     325 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.062
  PALB2_WD40 192 allgttvlnniviWnlktGqllkkieigesyqasvc 227
                  l+++++++ + +W+  tG l ++i+ g++ + s c
  CDO68107.1 101 VLVSASDDSTMKVWDWDTGELERTIQ-GHTRRVSDC 135
                 68999999999*********999987.555555555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0031
  PALB2_WD40 192 allgtt.vlnniviWnlktGqllkki 216
                 a+++t+  +++i iW+ +tGq l+++
  CDO68107.1 243 AFVATAsRDQKIKIWDARTGQCLHTL 268
                 66776515689***********9986 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0011
  PALB2_WD40 193 llgttvlnniviWnlktGqllkkieigesyqasv 226
                 ll+++++ +i iW+++tG+ ++k++ ge + +s+
  CDO68107.1 287 LLSAADDGSIRIWEIATGRCIRKVDTGERFVSSL 320
                 78899999********************998886 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.34   7.6e+02     291     327 ..     107     142 ..      93     168 .. 0.60
   2 !   13.7   0.0   7.4e-06     0.016       6      77 ..     243     314 ..     238     329 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.34
                   SHT-EEEEETTBT-EEE-HHHHHT--EEEEEE-TTSS CS
  Cytochrom_D1 291 dndsvaviDkktlekvltlaesaglkvvhvEfnkdGd 327
                   d+  ++v+D  t e   t++ ++   v   E+ ++G+
    CDO68107.1 107 DDSTMKVWDWDTGELERTIQGHTR-RVSDCEYDSKGK 142
                   344555666666666666655554.566666666664 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.4e-06
                   EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SS CS
  Cytochrom_D1   6 lfvvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGl 77 
                    fv + + + k+++ d+ + + l++l ++     + vf ++gRy++ ++ Dg + + ++ + + +++v  G 
    CDO68107.1 243 AFVATASRDQKIKIWDARTGQCLHTLIGHDGWVHGLVFHPNGRYLLSAADDGSIRIWEIATGRCIRKVDTGE 314
                   69999999***************999998766557899999*************************999996 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011        26     180     243 ..     121     180 ..      84     192 .. 0.72
   2 !    5.6   0.0     0.003       6.8     260     283 ..     245     268 ..     238     271 .. 0.90
   3 ?    1.8   0.0     0.042        94     190     217 ..     275     302 ..     268     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.011
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllf 243
                     i+ h+  +++  + + G  l  +s+d ++k++ v     +e + +  ++ hd +s+s++ f
  CDO68107.1 121 LERTIQGHTrRVSDCEYDSKGKFLVSCSHDLFIKLWDVD----NEYKNISTFRGHD-HSISTVRF 180
                 344588888789************************984....4455566666666.45666555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.003
    Ge1_WD40 260 itgadnnselklWscelWtClqti 283
                 +++a++++ +k+W + + +Cl t+
  CDO68107.1 245 VATASRDQKIKIWDARTGQCLHTL 268
                 7789999**************997 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.042
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvy 217
                 +   +f p+G  l  a+ dG ++ + + 
  CDO68107.1 275 VHGLVFHPNGRYLLSAADDGSIRIWEIA 302
                 56668999***************99985 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00029      0.65      97     164 ..      84     150 ..      78     179 .. 0.78
   2 ?    2.5   0.0     0.053   1.2e+02      83     141 ..     252     310 ..     238     323 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00029
                 EEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEEEEEE-T CS
       eIF2A  97 kleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryvlTatta 164
                 + ++++ N++ f+p   +++ a   ++   +++wd +  +++   + +    +++e++ +g++++ ++  
  CDO68107.1  84 TGHRANVNAVTFHPLYSVLVSASDDST---MKVWDWDtgELERTIQGHTRRVSDCEYDSKGKFLVSCSHD 150
                 556778899999999999999987776...88866665599999999******************98864 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.053
                 CEEEEEECS.CEEEEEE..EEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE CS
       eIF2A  83 akvslfdlk.vkviskl..eeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiaka 141
                 +k++++d + ++ +++l  +      ++f+p+g+++l a      G++ iw+  + ++i k+
  CDO68107.1 252 QKIKIWDARtGQCLHTLigHDGWVHGLVFHPNGRYLLSAA---DDGSIRIWEIATGRCIRKV 310
                 5555555543444444411233345566777777776664...2466666666655555554 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   5.7e-05      0.13       7      27 .]      17      37 ..      15      37 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.7e-05
                HHHHHHHCT-HHHHHHHHHHT CS
        LisH  7 IydYLvkeGyeetAeaFekEa 27
                ++dY+   Gy++t+e F++Ea
  CDO68107.1 17 MLDYFHSAGYHKTFEQFKEEA 37
                69******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2365.23
//
Query:       CDO68108.1  [L=247]
Description: hypothetical protein BN946_scf185044.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.24   11.7   0.0    1.3  1  DUF2390   Protein of unknown function (DUF2390)


Domain annotation for each model (and alignments):
>> DUF2390  Protein of unknown function (DUF2390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.24      49     105 ..     123     183 ..     112     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
     DUF2390  49 eelaaleaavaewreevvkp..lRalRralkaaase..dea.ealreqlkavELeaErvele 105
                 ++  +l+++va+  e+v++p  lR++R +++ + ++  +   + ++e+  +vEL++ rv+l+
  CDO68108.1 123 ASEGELTRHVAHAGEKVMEPfgLRRIRVRIQWPYPRggE-VsRMVYEEWIKVELHMSRVQLA 183
                 45567889999999999999668**********999844.45*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1721.67
//
Query:       CDO68109.1  [L=536]
Description: hypothetical protein BN946_scf185044.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3808.87
//
Query:       CDO68110.1  [L=297]
Description: hypothetical protein BN946_scf185044.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1860  (0.103743); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2041.77
//
Query:       CDO68111.1  [L=325]
Description: hypothetical protein BN946_scf185044.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-10   40.6   0.0    8.6e-09   35.5   0.0    2.1  1  Sad1_UNC  Sad1 / UNC-like C-terminal


Domain annotation for each model (and alignments):
>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.8e-13   8.6e-09       5     119 ..     174     317 ..     170     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.8e-13
                 -B-GGGGGSS--STT-SEEEESS-EEEEEEEEEEEEEEEEEEE---GGGSG.-TTSB-EEEEEEESSTT---........................-EE CS
    Sad1_UNC   5 akapkvilqedyspgeCwsfkgsrgfvvieLseeiiveavtlehveksvap.isSapKdfevsgskrypekk........................wvl 78 
                 + +p v+++ d+++g Cw ++    ++ i+L + i+++++t+eh++ +va  +  ap++++++g+ +++ +k                        w  
  CDO68111.1 174 EDDPGVAIDDDVHAGRCWRIHTLPSQLGIRLPRMIYPDSITVEHLPAEVALdVGEAPQNITLWGVVEGKHNKevyetfvrmglqqdrapaisrgllWAP 272
                 56677889999******************************************************99999888999*********************** PP

                 EEEEE-.-TTS-SEEEEE--TT...----EEEEEEEE--BSS-SS CS
    Sad1_UNC  79 lgefsy.dedgknaqtFelees...kdilvkyvkleilsnyGnee 119
                 l+ f+y  e+++++q F++ +    + i v +v +ei  n+Gn +
  CDO68111.1 273 LASFRYdVEHEDPVQRFPVSQYfldNPISVGVVAVEISGNWGNGS 317
                 ******5577889******9985434459999*********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2268.10
//
Query:       CDO68112.1  [L=161]
Description: hypothetical protein BN946_scf185044.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1144.55
//
Query:       CDO68113.1  [L=237]
Description: hypothetical protein BN946_scf185044.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1611.46
//
Query:       CDO68114.1  [L=479]
Description: hypothetical protein BN946_scf185044.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1270  (0.070835); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.37s 00:00:01.42 Elapsed: 00:00:00.51
# Mc/sec: 2799.19
//
Query:       CDO68115.1  [L=1002]
Description: hypothetical protein BN946_scf185044.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.5e-113  377.5   0.0   8.1e-113  376.9   0.0    1.3  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
       0.52    9.7  10.5       0.84    9.0  10.5    1.2  1  SDA1      SDA1
        4.1    6.6  12.5        6.7    5.9  12.5    1.2  1  BUD22     BUD22


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.9   0.0  1.4e-116  8.1e-113       1     324 []     262     577 ..     262     577 .. 0.95

  Alignments for each domain:
  == domain 1  score: 376.9 bits;  conditional E-value: 1.4e-116
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 Fk++ +L+++iD+ l sg+p++ ++e+ v+ge            +e+++rd+++++++l+g+p+fa+ l+++Per+y+d++++ rv+ +m+tg+w+w q
  CDO68115.1 262 FKSSVQLNTIIDEkLVSGRPRFIRREIVVAGEA-----------FEVFYRDIIACVRALFGDPEFAGVLVFTPERHYADADRTVRVFFDMHTGKWWWAQ 349
                 99***********9*****************87...........**********************************99777**************** PP

     Plavaka  99 q.ieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLke 196
                 q +e + + gat++p+i+ssDKT+l+ f g+k+ayPvY++iGn+pk+vrr++sr+++vllayLp+++l +i++ + +r+++ ++l+Hac++ril+pL++
  CDO68115.1 350 QeME-RRNPGATIIPIIISSDKTQLTLF-GSKAAYPVYMTIGNLPKDVRRQPSRRGQVLLAYLPTSNLAHITSAP-ARRRALSNLYHACMTRILKPLRT 445
                 *555.3345*******************.******************************************7555.5555******************* PP

     Plavaka 197 agkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl..eeselrtreetlelleeaade...lkklwkeyglkgviepF 290
                 ag +g+ ++++dg+ rr +pi+aa ++DypEqvlv ++++g+Cpkc ++++++g++   e +lr+ +++ ++l+++ ++   + ++++++g+k ++ p+
  CDO68115.1 446 AGIDGISLASGDGVWRRGHPIFAAHVGDYPEQVLVVGCKTGECPKCPIPADDIGQStdCERPLRDFQNVIAALQTVDKGprvFARACRDAGIKRIQSPY 544
                 ******************************************************974555699*****99999999766999***************** PP

     Plavaka 291 wedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 w++lp++di+++++pD+LHql +gv+k H+v W+
  CDO68115.1 545 WSNLPFVDIYQSINPDILHQLLQGVVK-HVVGWI 577
                 ***************************.*****7 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  10.5   0.00014      0.84      73     160 ..      32     127 ..      13     184 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00014
        SDA1  73 leLlekwkeeekkekre............eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeee 159
                 l Lle++ +  ++++re            + e ++   dd +d e ++  +s++d +g+  + +    + +++de++++++ +++++++e ++ ++ e+
  CDO68115.1  32 LALLEQVIDASSDDEREdapqvfrgdhfgDYEPEE--FDDYDDYEGDT--SSDDDGDGDEANLTGGLGSLNVDDEDDEDDDPRDDDQSSEMEDAQNYED 126
                 34999999999988887777788887765222222..22333333333..3344556666666666668888885555555555555555555555544 PP

        SDA1 160 e 160
                 e
  CDO68115.1 127 E 127
                 3 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  12.5    0.0011       6.7     198     261 ..      46     129 ..      18     155 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0011
       BUD22 198 ddedaee......deedeeaeerelaqydglla..sddeded...............eyneetdeesseesdssdssesaseseses 261
                 + e   +       ++  ++e +e+ +yd+  +  s+d+d d               ++++++d++++++++ss+ +++++ +++ +
  CDO68115.1  46 ERE---DapqvfrGDHFGDYEPEEFDDYDDYEGdtSSDDDGDgdeanltgglgslnvDDEDDEDDDPRDDDQSSEMEDAQNYEDEAA 129
                 111...123345544555666666666666433465555555667777777776644323333333333333333333222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 6273.05
//
Query:       CDO68116.1  [L=151]
Description: hypothetical protein BN946_scf185044.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1109.71
//
Query:       CDO68117.1  [L=364]
Description: hypothetical protein BN946_scf185044.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2745.49
//
Query:       CDO68118.1  [L=522]
Description: hypothetical protein BN946_scf185044.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.4   0.1     0.0089   15.9   0.1    1.8  1  F-box-like  F-box-like
  ------ inclusion threshold ------
        1.9    8.5   8.3         13    5.8   0.3    3.7  3  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     1e-06    0.0089       6      45 ..      32      79 ..      32      81 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-06
  F-box-like  6 dEiLlqIFsyL.pps.d........LlrlalVCrrWrrvaldtplLWrrl 45
                dE+L  I+ +L +p  d        L++lalVC+    +al t  LW rl
  CDO68118.1 32 DELLRNILLHLtEPLvDdpdegrqaLASLALVCKTISPLALAT--LWERL 79
                5777777755422112234467777***************888..***98 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0014        13       8      32 ..      32      66 ..      31      68 .. 0.82
   2 ?    3.9   0.4    0.0058        52      20      39 ..     221     240 ..     220     249 .. 0.86
   3 ?    1.5   0.1     0.033   2.9e+02       7      24 ..     288     305 ..     244     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0014
                HHHHHHHHHTS-HHH..........HHHHCTT-HH CS
       F-box  8 sevlrhILerLplsd..........llalrrVSkg 32
                +e+lr+IL +L              l +l++V+k+
  CDO68118.1 32 DELLRNILLHLTEPLvddpdegrqaLASLALVCKT 66
                89********8655577999999999999999987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0058
                 HHHHHHHCTT-HHHHHHHTT CS
       F-box  20 lsdllalrrVSkgwrilids 39 
                 ls+ll+lr+ S++ + +  +
  CDO68118.1 221 LSSLLSLRSLSTSTNTIASR 240
                 689**********9998876 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.033
                 -HHHHHHHHHTS-HHHHH CS
       F-box   7 PsevlrhILerLplsdll 24 
                 P+ ++++ILe +p + + 
  CDO68118.1 288 PPLLVHDILECMPRCGVQ 305
                 444999******988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3812.15
//
Query:       CDO68119.1  [L=772]
Description: hypothetical protein BN946_scf185044.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-55  187.1   0.0    4.4e-55  186.5   0.0    1.3  1  DNA_primase_S  DNA primase small subunit


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   0.0   2.4e-59   4.4e-55       1     176 [.     110     348 ..     110     349 .. 0.96

  Alignments for each domain:
  == domain 1  score: 186.5 bits;  conditional E-value: 2.4e-59
                    EEEEEETTT-.....TT--HHHHHHHHHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH............... CS
  DNA_primase_S   1 FDiDmddydd....cseatvcekcwkfvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnly........... 81 
                    FDiDm+dyd     cs+a++c+ cw+++s av+vld +lre fg+k++lwv+sgrrG+H+w+sd +a +ltd +r+a+v  l+++           
     CDO68119.1 110 FDIDMTDYDPirtcCSGADICKRCWRYISAAVRVLDRALREQFGYKHLLWVYSGRRGIHLWISDREALELTDDQRRALVGWLTVIqggkemhkkvn 205
                    9*******************************************************************************555555*****99999 PP

                    .......................................HCHHHHCT--------......................................... CS
  DNA_primase_S  82 .....rplhpflsrsmlkivkpvveeiileeqdpf....eikkllrllpdkslre..kkkw................................... 131
                         +pl p+l+ +  k ++pv+ + +l +qd f    +++ ll+l+pd++ +e  ++ w                                   
     CDO68119.1 206 vrigaKPLPPSLASA-YKMLEPVFHDLVLDDQDCFgseeGWEALLHLIPDRDIAEdlRQHWaarpsrsseakwrdfeeaieekrakkdkgaertaa 300
                    999988899999999.************************************999**8888888888888888*********************** PP

                    .................-----------------....---------. CS
  DNA_primase_S 132 ...eakedivlvllyprldeqvtkgikhllkapfcihgktgnvcvpld 176
                       +akedivl+++yprld +v+k+++hllkapfc+h+ktg+vcvp+d
     CDO68119.1 301 qlaAAKEDIVLQYTYPRLDAEVSKHRNHLLKAPFCVHPKTGRVCVPVD 348
                    **********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4856.60
//
Query:       CDO68120.1  [L=327]
Description: hypothetical protein BN946_scf185044.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2213.52
//
Query:       CDO68121.1  [L=1456]
Description: hypothetical protein BN946_scf185044.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-16   58.5   0.0    9.6e-16   57.7   0.0    1.3  1  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   5.4e-20   9.6e-16      19     152 ..     665     803 ..     649     837 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 5.4e-20
  Transposase_21  19 kyeefaedprnvrlglatdGfnPfgsms..ssysvWpvllipynlPPWlclkqsnfllsllipGpksPg.kdidvylePlvddlkelweeGvety 110
                      y+e a    ++ +gl  d fnP g+ +  +s sv  + l+ ynlPP l + q+++ l  +ipGp++P  ++++ +l+Plvd+l+ lw++G+   
      CDO68121.1 665 LYSEQAGSDVHLVFGLFIDWFNPGGNKQagKSRSVGAIYLVCYNLPPELRFLQEHMCLLGIIPGPNEPSvHELNHFLRPLVDELLVLWRSGIWLS 759
                     56777777889999*********997651168899*******************999999********7579********************987 PP

  Transposase_21 111 dalke.ekfnlravllwtindfPalstlsGlstkgkl.acvtCk 152
                      +  +     +ra+++  i d Pa+ + +G + +g +  c  C 
      CDO68121.1 760 QTALHpAGRLVRAAVIPLICDLPAMRKAAGFAGHGSThFCSFCL 803
                     76555055567*********************998651577775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.26s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 9484.22
//
Query:       CDO68122.1  [L=99]
Description: hypothetical protein BN946_scf185044.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       142  (0.00792013); expected 358.6 (0.02)
Passed bias filter:                      123  (0.00686039); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 713.54
//
Query:       CDO68123.1  [L=261]
Description: hypothetical protein BN946_scf185044.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0026   17.7   1.2     0.0035   17.3   1.2    1.2  1  Myc_N           Myc amino-terminal region
     0.0029   18.0   1.3     0.0045   17.4   1.3    1.3  1  Tub_N           Tubby N-terminal
  ------ inclusion threshold ------
      0.027   13.6   0.9       0.04   13.0   0.9    1.3  1  TAP42           TAP42-like family
      0.047   14.0   0.0      0.096   13.0   0.0    1.5  1  TAL_effector    TAL effector repeat
       0.11   11.0   3.0       0.13   10.8   3.0    1.1  1  RRN3            RNA polymerase I specific transcription initi
       0.47    8.5   5.1       0.63    8.1   5.1    1.2  1  DNA_pol_phi     DNA polymerase phi
       0.66   10.4   4.2        2.9    8.3   3.2    2.2  2  PBP1_TM         Transmembrane domain of transglycosylase PBP1
        1.6    9.2  11.8        3.5    8.1  11.8    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain
          3    7.5   9.5        5.8    6.6   9.4    1.6  1  LAT             Linker for activation of T-cells
        6.5    6.0   8.5        9.5    5.4   8.5    1.2  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.2     2e-06    0.0035     206     282 ..      78     157 ..      36     174 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2e-06
       Myc_N 206 dppas..ssssasaassssssdskalssseedvlsesdeeeeeeeeeeeeidVVtvekrrssskrkevstlt..talsssr 282
                  p+++  s++ ++++ + s++ +++   +e    +e++  +e+eee++e+ dVV +  +  ss++++ s ++  ++++++r
  CDO68123.1  78 MPTKAkgSNVFRAGHVQPSQAAEDQGDENEAMNDDETQPADEDEEEDDEDDDVVILPTTPASSQKRK-SAVPhgASTKKAR 157
                 3444433344444444433333333333444444445556677778889999***999988877666.4454243444444 PP

>> Tub_N  Tubby N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.3   2.5e-06    0.0045     151     198 ..     100     157 ..      68     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
       Tub_N 151 qkr.gisssmnfde....eedleeekees.....kkssssaeensstrpeSasskkss 198
                 + +   ++ mn+de    +ed+ee++e++      ++++s+++ +s  p +as kk  
  CDO68123.1 100 EDQgDENEAMNDDEtqpaDEDEEEDDEDDdvvilPTTPASSQKRKSAVPHGASTKKAR 157
                 333466899*****888655555555555899**9******************99975 PP

>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.9   2.3e-05      0.04     247     296 ..      84     129 ..      44     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
       TAP42 247 qkkVfgpghslPtMtvdEyleeevrrGniiegggeasakeeeeeedeeed 296
                  ++Vf++gh  P+   ++  +e  +    +++ +++ a+e+eee+de++d
  CDO68123.1  84 GSNVFRAGHVQPSQAAEDQGDENEA----MNDDETQPADEDEEEDDEDDD 129
                 589**********999999999887....888888888888886666665 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.4e-05     0.096       3      18 ..     161     176 ..     161     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.4e-05
                   HHHHHHHHHHHHHHHH CS
  TAL_effector   3 GaQALeAVlahgpaLr 18 
                   GaQAL+AV + +++++
    CDO68123.1 161 GAQALQAVGEKLDDFN 176
                   9*********999887 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.0   7.3e-05      0.13     218     295 ..     100     185 ..      92     232 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
        RRN3 218 edlddeedeeleeelee..deddedddedd.........eesdlddlssdeeaeedee.kdeeeeslkkikelvekLDailtllfehlek 295
                 ed  de++  +++e++   ++++edd++ d         +   +++  +++  ++ ++ k++ ++ ++ ++++ ekLD   t+l + ++ 
  CDO68123.1 100 EDQGDENEAMNDDETQPadEDEEEDDED-DdvvilpttpA---SSQKRKSAVPHGASTkKARVSQGAQALQAVGEKLDDFNTILRSLVAL 185
                 4444444443333333342333333334.35899985432...333333333333333355555778999999*****988877666655 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.1   0.00035      0.63     647     678 ..      97     128 ..      79     174 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00035
  DNA_pol_phi 647 ddeeeeeeddeededseedddeeesdedeede 678
                  +  e++++++e ++d+e+   +e+++ed+ed+
   CDO68123.1  97 QAAEDQGDENEAMNDDETQPADEDEEEDDEDD 128
                  33333333333333333222222222222211 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.2    0.0016       2.9      23      56 ..     101     131 ..      80     157 .. 0.51
   2 ?    0.3   0.0       0.5     9e+02      19      38 ..     200     221 ..     193     236 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
     PBP1_TM  23 kkasrrrrrdddyddeyddeedDdddddeeeevp 56 
                 ++ + +       dde +   +D+++dde+++v 
  CDO68123.1 101 DQGDENEAM---NDDETQPADEDEEEDDEDDDVV 131
                 222332333...3344444445555444444442 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.5
     PBP1_TM  19 kparkkasrrrrr..dddydde 38 
                 +p+rk+ + rr +  +d  dd+
  CDO68123.1 200 TPQRKQLAIRRAQhlEDHLDDD 221
                 6777777766655567777774 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  11.8     0.002       3.5       7      45 ..      97     135 ..      91     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.002
  CENP-B_dimeris   7 eagedsesesdeeeeeeeedeededeeddedddevpvps 45 
                     +a ed   e +  +++e +  ++++eeddeddd v +p+
      CDO68123.1  97 QAAEDQGDENEAMNDDETQPADEDEEEDDEDDDVVILPT 135
                     566666666655566666655666678889999888775 PP

>> LAT  Linker for activation of T-cells
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.4    0.0032       5.8     100     156 ..      96     147 ..      70     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
         LAT 100 srqdsdgansvasyeneelacedadededeeDyhneGylvvLPDsspatstavssap 156
                 s+   d+ +   + +++e+++ d+de+ed+eD      +v+LP ++pa+s   +sa 
  CDO68123.1  96 SQAAEDQGDENEAMNDDETQPADEDEEEDDEDDD----VVILP-TTPASSQKRKSAV 147
                 2333333333444455588888888888777777....88898.5788887665553 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.5    0.0053       9.5     264     296 ..      97     129 ..      79     132 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0053
       NOA36 264 asgddeddegdedddddddeedddeeeddedee 296
                  +++d+ de++  +dd+++  d+deeedded++
  CDO68123.1  97 QAAEDQGDENEAMNDDETQPADEDEEEDDEDDD 129
                 233455555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1886.25
//
Query:       CDO68124.1  [L=97]
Description: hypothetical protein BN946_scf184995.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00026   21.3   1.2    0.00047   20.5   1.2    1.4  1  CM_2      Chorismate mutase type II


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.2   2.6e-08   0.00047       1      41 [.      31      71 ..      31      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.6e-08
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeR 41
                R++I +iD+++  L+a+R+ + ++++++++ ++++v+  +R
  CDO68124.1 31 RDRIAAIDQQLNGLFAQRMVIDDQIAHLRSLRAQAVEEDAR 71
                99***************************988888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 707.81
//
Query:       CDO68125.1  [L=571]
Description: hypothetical protein BN946_scf184995.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-17   63.6   3.0    2.6e-17   62.7   3.0    1.5  1  Integrase_H2C2  Integrase zinc binding domain
    5.5e-09   36.2   0.0    1.1e-08   35.3   0.0    1.5  1  rve             Integrase core domain
  ------ inclusion threshold ------
       0.08   13.2   0.0       0.19   11.9   0.0    1.6  1  DDE_Tnp_IS240   DDE domain


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   3.0   4.3e-21   2.6e-17       3      57 ..     266     320 ..     264     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 4.3e-21
  Integrase_H2C2   3 kslrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     ++ r +il+ aHd +gH G  +t + +++r++Wp+m++dv  yv++C+ Cq r++
      CDO68125.1 266 PEKRLDILRTAHDCLGHHGQYATSQFVSERFWWPTMQEDVAWYVRTCHLCQVRQH 320
                     57899**********************************************9986 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.8e-12   1.1e-08       7     112 ..     338     438 ..     334     444 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.8e-12
         rve   7 lwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdn 105
                 +w +D ++++    ++   + v+ +  s +     l++e+d ++   + +  ++r g     ++++Dngs++  +a+r++ ++++ ++    p++++ n
  CDO68125.1 338 RWYIDSMKMP--ASNSYRIIVVARCSVSAWPEWRMLRSENDRTLGDFIFQDLICRWGS--LVELITDNGSAFL-SAVRDLEKRFNLHHIKISPYNSKAN 431
                 7889999888..55656899999999999**********8888888888888888888..78***********.7************************ PP

         rve 106 GkvErfh 112
                 G+vEr h
  CDO68125.1 432 GIVERSH 438
                 *****99 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.19      60     111 ..     395     446 ..     376     466 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
  DDE_Tnp_IS240  60 eeivtDkasayasalkelkreg.elfdevshvqvkylnnriEsdhrtlKkrlr 111
                    +e++tD  sa++sa++ l + +   + ++s +++k  n ++E++h   ++ l+
     CDO68125.1 395 VELITDNGSAFLSAVRDLEKRFnLHHIKISPYNSKA-NGIVERSHFDTRQVLF 446
                    689*******************55567999999999.99******99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4100.02
//
Query:       CDO68126.1  [L=208]
Description: hypothetical protein BN946_scf184995.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00068   19.9   0.6     0.0013   19.1   0.6    1.4  1  CM_2      Chorismate mutase type II


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.6     7e-08    0.0013       1      41 [.     142     182 ..     142     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHH CS
        CM_2   1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeR 41 
                 R++I +iD+++  L+a+R+ + ++++++++ ++++v+  +R
  CDO68126.1 142 RDRIAAIDQQLNGLFAQRMVIDDQIAHLRSLRAQAVEEDAR 182
                 99**************************9888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1459.79
//
Query:       CDO68127.1  [L=1228]
Description: hypothetical protein BN946_scf184995.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-12   45.8   0.0      1e-11   44.7   0.0    1.6  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    1.8e-10   40.8   0.0    4.5e-10   39.5   0.0    1.7  1  Integrase_H2C2   Integrase zinc binding domain
      9e-10   38.8   0.0    1.9e-09   37.8   0.0    1.6  1  RT_RNaseH        RNase H-like domain found in reverse transcr
     0.0077   16.3   3.0        2.5    8.2   0.1    2.9  3  Nop10p           Nucleolar RNA-binding protein, Nop10p family
  ------ inclusion threshold ------
      0.096   13.3   0.0       0.19   12.3   0.0    1.4  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
       0.17   12.6   0.0       0.38   11.4   0.0    1.6  1  Asp_protease_2   Aspartyl protease


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   3.4e-15     1e-11       2      96 ..     302     401 ..     301     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.4e-15
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpd..kpfiletDaSdtgigavLsqedddgkerpiafaSr....klskaernysttekellAivwalkkfrhyl 93 
                  +e+q ka+e+lk+al ++p L+  +++  +p+il++D S  ++g  L q d+++    i+++Sr    +l+++e + s+ ++el+++++al+  + yl
   CDO68127.1 302 GEAQLKAMEDLKQALLESPALRAINYEspAPVILAIDTSYIAVGYHLAQCDEQKP--QICYYSRfrsiTLNERESRFSQPKLELYGLFHALQATKLYL 397
                  68899*****************9998823579********************765..566666555559***************************** PP

  RT_RNaseH_2  94 lg.r 96 
                   g r
   CDO68127.1 398 IGiR 401
                  9954 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.5e-13   4.5e-10       4      42 ..     625     663 ..     622     665 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.5e-13
  Integrase_H2C2   4 slrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdv 42 
                     + r +il++aHd +gH G  +t + +++r++Wp+m++dv
      CDO68127.1 625 EKRLDILRAAHDCLGHRGQYATSQFVSERFWWPTMQEDV 663
                     7899**********************************9 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.3e-13   1.9e-09       4     103 ..     331     435 ..     328     437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.3e-13
                 S-EEEEEEECTEEEEEEEEEETTE....EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--EEEE-SS--TTTTT----...---HHH CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreedge..erpiafaSrklsgaernystiekellAivaalkkfrhylqg.rkftvitDhknlkyllskks..lngrlar 97 
                  p+il +D s +++g  L q +e++        f S +l++ e+++s+ ++el+++ +al+  + yl g r+  v  D +++k +l++ +   ++ ++r
  CDO68127.1 331 APVILAIDTSYIAVGYHLAQCDEQKPqiCYYSRFRSITLNERESRFSQPKLELYGLFHALQATKLYLIGiRNLVVEVDARSIKGMLNNPDlaPSASMNR 429
                 5899****************666555233444455679*******************************999**************9888433599*** PP

                 HHHHC- CS
   RT_RNaseH  98 WaleLs 103
                 W l + 
  CDO68127.1 430 WILAIL 435
                 *98765 PP

>> Nop10p  Nucleolar RNA-binding protein, Nop10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2    0.0013       3.9      29      47 ..       5      23 ..       2      28 .. 0.87
   2 ?   -3.0   0.0       2.6   7.6e+03      13      31 ..    1068    1085 ..    1062    1086 .. 0.84
   3 !    8.2   0.1   0.00082       2.5      28      47 ..    1136    1155 ..    1114    1160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
                -SS--S--TT-TTCHHHHH CS
      Nop10p 29 sahPaRFSPdDkyskyRra 47
                ++ P+ FSP  +y ++R +
  CDO68127.1  5 NPNPPEFSPTGRYTAERKE 23
                899*************966 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                  -EESSSB-TTT-SB-B-SS CS
      Nop10p   13 vYTLkkvcpecggptksah 31  
                  v T+++++ e g+ t+++h
  CDO68127.1 1068 VFTFSYETEE-GSYTVTPH 1085
                  7899999998.99999998 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00082
                  B-SS--S--TT-TTCHHHHH CS
      Nop10p   28 ksahPaRFSPdDkyskyRra 47  
                   ++ P+ FSP  +y ++R +
  CDO68127.1 1136 LNPNPPEFSPTGRYTAERKE 1155
                  689***************76 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.4e-05      0.19       6      86 ..     816     896 ..     811     902 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
                      TTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.E.ETTEEEEEEEEEESSSSEEEE CS
  gag-asp_proteas   6 ngkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkigg.ielrnvsavvlegelddlLLG 86 
                      n + v+ +vD G   +++see   +lgl  ++   + ++  angev  + + +++v   +   +  ++++v+ +++ dlLLG
       CDO68127.1 816 NKEYVEGVVDPGCMVIAMSEEACHALGLWYDPS-VTLRMVSANGEVDSSLGLVRNVPSRSrYIVLYLQVHVICNAAYDLLLG 896
                      6667899*************************6.79***************9999977543556669999999999999999 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.38       9      59 ..     819     868 ..     811     879 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrld 59 
                      v+ ++D G+ ++ +s+e+ ++lgl  ++s +t r+ +a+gev ++l+ ++
      CDO68127.1 819 YVEGVVDPGCMVIAMSEEACHALGLWYDPS-VTLRMVSANGEVDSSLGLVR 868
                     56789************************8.6**********999887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8504.61
//
Query:       CDO68128.1  [L=341]
Description: hypothetical protein BN946_scf184995.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.028   15.1   0.0      0.085   13.5   0.0    1.8  1  Asp_protease_2   Aspartyl protease
       0.16   12.6   0.0       0.34   11.5   0.0    1.6  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.5e-06     0.085       9      58 ..     228     276 ..     220     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.5e-06
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrl 58 
                      v+ ++D G+ ++ +s+e+ ++lgl  ++s +t r+ +a+gev ++l+ +
      CDO68128.1 228 YVEGVVDPGCMVIAMSEEACHALGLWYDPS-VTLRMVSANGEVDSSLGLV 276
                     56789************************8.6**********99887765 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05      0.34       6      61 ..     225     279 ..     220     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
                      TTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEE CS
  gag-asp_proteas   6 ngkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsv 61 
                      n + v+ +vD G   +++see   +lgl  ++   + ++  angev  + + ++ +
       CDO68128.1 225 NKEYVEGVVDPGCMVIAMSEEACHALGLWYDPS-VTLRMVSANGEVDSSLGLVHVI 279
                      6667899*************************6.79**********9888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2477.21
//
Query:       CDO68129.1  [L=249]
Description: hypothetical protein BN946_scf185003.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-05   22.8   0.0    6.9e-05   22.5   0.0    1.2  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
      0.077   12.3   0.4        0.1   11.9   0.4    1.2  1  U79_P34          HSV U79 / HCMV P34


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   7.7e-09   6.9e-05      84     136 ..      24      78 ..       1      80 [. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.7e-09
  Retrotran_gag_2  84 lgvkiddedkvvllLasLPesyetfvtaies..seedltleevieklleeeerrk 136
                       g  ++++ ++v +L +LP+sy+t+ t + s  + +d t+e ++ k+l ee+ r+
       CDO68129.1  24 GGMHFTESQQAVFILIKLPPSYSTLSTSLTSshPLKDWTIEWIQGKVLAEESLRS 78 
                      577899*********************************************9876 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   1.1e-05       0.1     152     184 ..     112     144 ..      51     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
     U79_P34 152 rkkaddeqrkrsgkqkekrkvedidkkkedekr 184
                  kk+ d++ kr gk k k k +d dk k +++ 
  CDO68129.1 112 WKKHPDQRPKRGGKGKGKGKEKDKDKGKGKDNS 144
                 589*********************999877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1895.01
//
Query:       CDO68130.1  [L=125]
Description: hypothetical protein BN946_scf185003.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.066   12.9   0.0      0.092   12.4   0.0    1.2  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
      0.072   13.1   0.0       0.18   11.8   0.0    1.6  2  DEP              Domain found in Dishevelled, Egl-10, and Ple


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     1e-05     0.092      21      59 ..      32      70 ..      28      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
  Retrotran_gag_2 21 lelvkeektakevWdkLkelyekksaankltlrkklfsl 59
                      +++  + +ak++Wd Lk+++   ++a  + l+  + +l
       CDO68130.1 32 KKRIAASYSAKDMWDVLKKEFGTPDTAEAISLLMSFSNL 70
                     57889999**************99999999888888765 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05      0.18      11      46 ..      32      67 ..      21      78 .. 0.85
   2 ?   -1.9   0.0       0.4   3.6e+03      42      55 ..     108     121 ..     106     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                TEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHH CS
         DEP 11 lktypncftGseavdWLldnldiedreeAvalgqlL 46
                +k +  + ++++++d+L +++ + d +eA++l  ++
  CDO68130.1 32 KKRIAASYSAKDMWDVLKKEFGTPDTAEAISLLMSF 67
                78888999***********************99877 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.4
                 HHHHHHHCTSCECS CS
         DEP  42 lgqlLldqgliehv 55 
                 +++lL  +g+ + v
  CDO68130.1 108 FAKLLATHGYTTTV 121
                 78999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 894.63
//
Query:       CDO68131.1  [L=86]
Description: hypothetical protein BN946_scf185003.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 663.32
//
Query:       CDO68132.1  [L=828]
Description: hypothetical protein BN946_scf185003.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5733.79
//
Query:       CDO68133.1  [L=473]
Description: hypothetical protein BN946_scf185003.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3133.91
//
Query:       CDO68134.1  [L=598]
Description: hypothetical protein BN946_scf185003.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-70  237.9   0.0    2.6e-70  237.5   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.5   0.0   1.4e-74   2.6e-70      32     436 ..     119     544 ..     102     560 .. 0.88

  Alignments for each domain:
  == domain 1  score: 237.5 bits;  conditional E-value: 1.4e-74
                 HH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHH CS
        p450  32 kygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlvekl 129
                 + g ++ + +++ +  v ++++ +k +l  + +ef++      ++ + ++ +g gv++a+g++wk +R +  p +  +  + s  el+++ a+ l++k+
  CDO68134.1 119 ELGYLYDVTIMWGTNYVTTDANVIKTILAMEFAEFEK---GEEFRDAMGTVLGSGVFNADGDMWKFHRMMTRPYFYRD--RiSHFELFDRHAALLIKKM 212
                 5677888889999999999************655555...566666789*********************99999988..4489*************** PP

                 HCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH..................HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHH CS
        p450 130 rkkagesselditellskaaldvigsilFgarfdlledek..................lselvkaveelssllskssvqllllfpllkylptkllrklk 210
                 +++ +  + +d ++ +++++ld+ ++ l g+++d+le++                   ++++ +a+ e   l  + + ql  + ++   l +k+ + ++
  CDO68134.1 213 KDRFQGGHAVDFQDAIARFTLDSATEFLCGKCVDSLESDLpyahndavapnlvrkpnvAERFARAFTEAQ-LIIAMRSQLGWFWHFQELLRDKTAEPMQ 310
                 ************************************9999********9999998888777888888774.4446676777777777777788888888 PP

                 HHHHHHHHHHHHHHHHHHHCHCHC.......SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH CS
        p450 211 eavkklkdlldklieerretldsa.......kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreE 302
                  + ++l  +l++ i+ +r++  +         +++ ++ld+l++ +         + + l  ++l++l+a+ dTt++tl++a y++  +P+v ++lr E
  CDO68134.1 311 VVDQFLTPILEEAIRRNRASRVKGmashvkdADEDETLLDHLVKLT--------NNSNVLHDEMLNILIASRDTTAATLTFAVYLMCLYPDVFKRLRAE 401
                 7777777777777777777777778888888667888888888885........245678899************************************ PP

                 HHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.......EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS CS
        p450 303 idevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.......ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg 393
                 + e +g  + pt+dd+ +++yl+avi+EtLRl+p+vp+++ R+  +d+++++        ++p+ t +  ++  +hr+++++ p++e+Fdp+R+lde+ 
  CDO68134.1 402 VLERVGPTQVPTFDDVRSMKYLRAVINETLRLYPAVPFNV-RVPNRDTTLPNpdpngprIFVPAQTPIGYSVFLMHRRKDYWgPDAEKFDPDRWLDERL 499
                 *************************************665.**********999999****************************************99 PP

                 ..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEE CS
        p450 394 ..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFeve 436
                    +  ++f f+PF aGpR+C+G+++A+ e++ fl++lLqnF+  
  CDO68134.1 500 nkYFTANPFIFVPFNAGPRICLGQQFAYNEMSFFLIRLLQNFSAM 544
                 886779************************************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3961.15
//
Query:       CDO68135.1  [L=523]
Description: hypothetical protein BN946_scf185003.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-72  244.8   0.0    2.2e-72  244.3   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   1.2e-76   2.2e-72      33     439 ..      43     472 ..      37     486 .. 0.87

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 1.2e-76
                 H-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHH CS
        p450  33 ygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklr 130
                  g ++ + + +  + + ++++ vk+vl ++   fs+  +  +++ + +  +g+g+++a+g++wk +R +  p +  +  + s  el+++ a+ +++k++
  CDO68135.1  43 LGYLYAISIFWDVTYLTTDANVVKSVLATD---FSDFEKGEVFRDAMNSVLGTGIFNADGDMWKFHRMMTRPYFSRD--RiSHFELFDRHADLVIRKMK 136
                 577778888888899999************...666667789999999*********************99999988..4489**************** PP

                 CCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH...........HHHHHHHHHHHHHHHHCHHHHCCCCCH..HHTCCSCHHHHHHHHHHHHH CS
        p450 131 kkagesselditellskaaldvigsilFgarfdlledek...........lselvkaveelssllskssvqllllfp..llkylptkllrklkeavkkl 216
                 ++ +  + +d ++ +s+++ld+ ++ lFg+++ +le +            l++ +++ e+  + ++   + + l  +  + + l + l+ k  e ++++
  CDO68135.1 137 ERFKGGHAVDFQDAISRFTLDSATEFLFGKCVHSLEGDLpyahndpvvpqLLKQQTVAERFATAFADAQHAISLRARtgWTWHLSELLRDKSAEPMRIV 235
                 ***********************************9999********9986666677777777888888888888888899999999999999999999 PP

                 HHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC..TTCTCT.SSSSHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTT CS
        p450 217 kdlldklieerretldsakksrrdfldalllak..kekkge.sklsde..elaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdk 310
                 + +l++++ee  ++ + ak +  +++ +  +a   ++  ++  k++d+   l  ++l++l+aG dTt++tl++a y++  +P v ++lr E+ e +g  
  CDO68135.1 236 DAFLQPILEEAIAKNRAAKAQAESGATVSKDAGddETLLDHlVKYTDDpvVLHDETLNILIAGRDTTAATLTFAVYLMCLHPAVFKRLRGEVLEKVGPT 334
                 99999999999999999944444444444444333222233667777722456799******************************************* PP

                 TT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.......EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS..CTESSC CS
        p450 311 reptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.......ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg..nskrks 399
                 + p++dd+ +++yl+avi+EtLRl+p+vp+++ +++ +d+++++       ++ipkG +++ ++  +hr+++++ p++  Fdp+R+lde+    +  ++
  CDO68135.1 335 QMPSFDDVRNMKYLRAVINETLRLYPAVPFNI-KVAIRDTTLPNpdpngppVFIPKGVDISYSMFLMHRRKDYWgPDALYFDPDRWLDERLnkYFTTNP 432
                 *****************************777.**********999999****************************************99886789** PP

                 TT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 400 faflPFGaGpRnCiGerlArmelklflatlLqnFevelqp 439
                 f flPF aGpR+C+G+++A+ e++ fl++lLqnF+    +
  CDO68135.1 433 FIFLPFNAGPRICLGQQFAYNEMSFFLIRLLQNFSSMELD 472
                 **********************************865444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3621.05
//
Query:       CDO68136.1  [L=448]
Description: hypothetical protein BN946_scf185003.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-66  223.3   0.0    4.2e-66  222.9   0.0    1.2  1  Tubulin          Tubulin/FtsZ family, GTPase domain
    2.2e-46  157.1   0.0    3.3e-46  156.5   0.0    1.3  1  Tubulin_C        Tubulin C-terminal domain
    0.00043   20.0   0.0    0.00083   19.1   0.0    1.5  1  Tubulin_3        Tubulin domain
  ------ inclusion threshold ------
      0.057   13.7   0.0      0.093   13.0   0.0    1.3  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain
       0.14   12.0   0.0        2.6    7.9   0.0    2.2  2  Lipase_3         Lipase (class 3)


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.9   0.0   1.2e-69   4.2e-66       1     197 []       3     213 ..       3     213 .. 0.99

  Alignments for each domain:
  == domain 1  score: 222.9 bits;  conditional E-value: 1.2e-69
                 EEEEEEEHHHHHHHHHHHHH...HHHCH...............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTTC CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg...........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagnn 86 
                 e+i ++vGq+G+qign++wel+  ehg+++dg           + +++fFse+g+++++prs+ +d++p +++ +k+g+  +lf+p+++++gke+a+nn
  CDO68136.1   3 EVISLQVGQAGVQIGNACWELYTLEHGLNPDGrptetsnthhdTGFSTFFSETGSGKLVPRSLYVDLEPGAIDDVKTGPyrSLFHPETMISGKEDAANN 101
                 799**************************999**********999****************************************************** PP

                 --TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SEE CS
     Tubulin  87 gaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesdav 184
                 +a+g+++vgke+++ ++++ir+ +++c+ lqgff+++s+gGGTGSG+g++++e+l ++y k+ ++ ++v+P  + s+++vepyn++l++++  e+sd+ 
  CDO68136.1 102 YARGHYTVGKELIDPVMDKIRRLADNCNGLQGFFVFHSFGGGTGSGFGALLMERLANDYGKKSKLEFCVYPApQLSSSIVEPYNSVLTTHTTLEHSDCS 200
                 *************************************************************************************************** PP

                 EEEEHHHHHCCST CS
     Tubulin 185 ividNdaLlkiln 197
                 +++dN+a+++i++
  CDO68136.1 201 FMVDNEAIFDICK 213
                 ***********96 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   9.3e-50   3.3e-46       1     125 [.     262     391 ..     262     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 9.3e-50
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 Pr+hF++ s+aPl+sa+ka++e++sv+++t +++ep n+mvk+dpr+gky+a+all+rGdv+pk+ ++av++ik+kk++qfv+W+ tg+k +++++++ 
  CDO68136.1 262 PRIHFPVASFAPLISADKAHHEQNSVSEMTFSCFEPGNQMVKCDPREGKYMACALLYRGDVVPKDTSAAVASIKTKKTIQFVDWCLTGFKLGICNEPAA 360
                 9************************************************************************************************** PP

                 -TTTS.....SCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C 100 vkkqs.....kvsvlmlaNttsiaelfkrll 125
                  +++      ++s +ml+Ntt+i+ +++rl+
  CDO68136.1 361 CVPGGdlaktTRSLCMLSNTTAISAAWSRLD 391
                 ***99999999*****************986 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.3e-07   0.00083      60     107 ..     118     165 ..      82     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.3e-07
   Tubulin_3  60 ldrdlrpfaeecdqlrglqvftgvddaWG.Gfaakylerlrdeygkksi 107
                 +d  +r +a++c+ l+g+ vf +     G Gf+a  +erl ++ygkks 
  CDO68136.1 118 MD-KIRRLADNCNGLQGFFVFHSFGGGTGsGFGALLMERLANDYGKKSK 165
                 33.4899****************99887769***************995 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.093       1      67 [.       2      71 ..       2     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
  Misat_Tub_SegII  1 rEivtlqlGnyaNyvgtHfWNtQ..esyftydeeeee.sevdhdvlfregetkqgqvtytPRllivDlkg 67
                     rE+++lq+G+    +g   W +   e+ ++ d +  e s+ +hd+ f +  +++g+ + +PR l vDl+ 
       CDO68136.1  2 REVISLQVGQAGVQIGNACWELYtlEHGLNPDGRPTEtSNTHHDTGFSTFFSETGSGKLVPRSLYVDLEP 71
                     8*******************97522666655544433699***************************975 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00073       2.6      36     108 ..     103     177 ..      74     198 .. 0.82
   2 ?    1.7   0.0     0.061   2.2e+02      79     136 ..     269     325 ..     268     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00073
                 EHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS...---EEEEEES----B CS
    Lipase_3  36 hsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengene...kkkvtvvtfGqPrvg 108
                  +g +++ +  l + v ++++rl ++ + ++  ++ HS+Gg++ + +++ l e+  n+   k+k++  ++ +P+  
  CDO68136.1 103 ARGHYTVGK-ELIDPVMDKIRRLADNCNGLQGFFVFHSFGGGTGSGFGALLMERLANDygkKSKLEFCVYPAPQLS 177
                 556666666.889999*************************************99998888888888888888765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.061
                 HHHHHHHHHHTT-SS---EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG CS
    Lipase_3  79 AlLaaldlvengenekkkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPr 136
                 A++a+l  + +  +e++ v+ +tf++   gn+ ++   + ++++  +   +++D+vP+
  CDO68136.1 269 ASFAPLISADKAHHEQNSVSEMTFSCFEPGNQMVKCDPR-EGKYMACALLYRGDVVPK 325
                 444455555555555789999**********99998888.6677799999******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3176.22
//
Query:       CDO68137.1  [L=447]
Description: hypothetical protein BN946_scf185003.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-65  219.1   0.0    8.9e-65  218.6   0.0    1.2  1  Tubulin    Tubulin/FtsZ family, GTPase domain
    3.2e-47  159.8   0.0      5e-47  159.2   0.0    1.3  1  Tubulin_C  Tubulin C-terminal domain
    7.4e-05   22.5   0.0    0.00014   21.6   0.0    1.5  1  Tubulin_3  Tubulin domain
  ------ inclusion threshold ------
       0.11   11.6   0.0       0.17   11.0   0.0    1.2  1  Tubulin_2  Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0     2e-68   8.9e-65       1     197 []       3     213 ..       3     213 .. 0.99

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 2e-68
                 EEEEEEEHHHHHHHHHHHHH...HHHCH...............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTTC CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg...........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagnn 86 
                 e+i ++vGq+G+qign++wel+  ehg+ +dg           d +++fFse+++++ +prs+ +d++p+v++e+++g+  +lf+p++l++gke+a++n
  CDO68137.1   3 EVISVHVGQAGIQIGNACWELYTVEHGLGPDGrllegspshhdDGFSTFFSETSSGKHVPRSLYVDLEPNVVDEVRNGPyrSLFHPETLVTGKEDAASN 101
                 799*************************9999******************************************************************* PP

                 --TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SEE CS
     Tubulin  87 gaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesdav 184
                 +a+g++++gke ++ ++++ir+ +++c+ lqgff+++s+gGGTGSG+g+++le+l+ ey k+ ++ ++v+P  ++ +++vepyn++l++++  ++sd+ 
  CDO68137.1 102 YARGHYTIGKEQIDVVMDRIRRLADNCNGLQGFFVFHSFGGGTGSGFGALVLERLSTEYGKKSKLEFSVYPApTMANSIVEPYNSVLTTHTTLDHSDCS 200
                 *************************************************************************999*********************** PP

                 EEEEHHHHHCCST CS
     Tubulin 185 ividNdaLlkiln 197
                 +++dN+a+++i++
  CDO68137.1 201 FMVDNEAIYDICK 213
                 ***********96 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.0   1.1e-50     5e-47       1     125 [.     262     391 ..     262     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1.1e-50
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 Pr+hF+l ++aP++saeka++e++sv d+t +++e+ n+mvk+dpr+gky+a+all+rGdv+pk+ n+av+ ik+kk++qfv+W+ptg+k ++++++p 
  CDO68137.1 262 PRIHFPLATFAPIISAEKAHHEQNSVIDMTFSCFEAGNQMVKCDPREGKYMACALLYRGDVVPKDTNAAVSLIKTKKTIQFVDWCPTGFKLGICNEPPA 360
                 9************************************************************************************************** PP

                 -TTTS.....SCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C 100 vkkqs.....kvsvlmlaNttsiaelfkrll 125
                   ++      ++s +ml+Ntt+i+++++rl+
  CDO68137.1 361 HIPGGdlakvTRSLCMLSNTTAISSAWSRLD 391
                 ***999**999******************97 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.1e-08   0.00014      58     107 ..     115     165 ..      83     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.1e-08
   Tubulin_3  58 dlldrdlrpfaeecdqlrglqvftgvddaWG.Gfaakylerlrdeygkksi 107
                 d++   +r +a++c+ l+g+ vf +     G Gf+a  lerl  eygkks 
  CDO68137.1 115 DVVMDRIRRLADNCNGLQGFFVFHSFGGGTGsGFGALVLERLSTEYGKKSK 165
                 6655559******************99887769***************995 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.8e-05      0.17     136     189 ..     111     165 ..     102     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
   Tubulin_2 136 realrdaikrlrgsage.eeglnvfVvgSLaGGTGSGiflDvayllrkilkeekq 189
                 +e+++ +++r+r+ a + +++  +fV+ S  GGTGSG    v+  l  +++++ +
  CDO68137.1 111 KEQIDVVMDRIRRLADNcNGLQGFFVFHSFGGGTGSGFGALVLERLSTEYGKKSK 165
                 56777778888886566667789**************866666666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3226.85
//
Query:       CDO68138.1  [L=926]
Description: hypothetical protein BN946_scf185003.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-28   98.8   0.1    4.3e-20   72.5   0.0    2.9  2  Abhydrolase_3  alpha/beta hydrolase fold
    8.8e-05   21.5   0.1    0.00046   19.1   0.1    2.2  1  Say1_Mug180    Steryl acetyl hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   4.8e-24   4.3e-20      15     120 ..     173     280 ..     167     296 .. 0.90
   2 !   23.0   0.0   6.9e-09   6.2e-05     130     191 ..     441     502 ..     425     507 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 4.8e-24
                    TTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHH.HHT..ETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEES CS
  Abhydrolase_3  15 dthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqaw.elg..adpsrivlaGdSaGGnlaaavalrardegepkvagqvliy 107
                    dth+  + ++a++++ +++ v+Yr AP++p+P +++d+laa+ +l +    + +  ++ps++vlaGdSaG+ l + ++  +rd g p++ag vli+
     CDO68138.1 173 DTHRYQVIRYARKMHGRAFTVNYRKAPQYPWPCPLQDVLAAYFYLTNPPPgAVHrpVHPSKLVLAGDSAGASLCLTALTILRDLGIPQPAGAVLIS 268
                    789999999***************************************97777777**************************************** PP

                    E-SSTSSTTSHHH CS
  Abhydrolase_3 108 Pvtdlertesesi 120
                    P++dl +++ +s 
     CDO68138.1 269 PWVDL-THSFPSV 280
                    ***99.6666666 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 6.9e-09
                    SSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHH CS
  Abhydrolase_3 130 plltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlr 191
                    p  t+ +l++ ++ly+  +++++pl+sp+l+++l +l+p +++ +  + lrde + +a++ +
     CDO68138.1 441 PNATPLELRAQIQLYATTEQLSHPLVSPVLQSSLGNLCPLYIIAGNGECLRDEIIYLAHKAA 502
                    5566677888899******************99********************999998865 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.2e-08   0.00046     195     239 ..     232     275 ..     155     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.2e-08
  Say1_Mug180 195 knvvvlGdSaGGnlvLslllklsklnkvvlPkkaiaiSPWlnlti 239
                   ++v+ GdSaG  l L+ l  l++l+    P +a++iSPW++lt 
   CDO68138.1 232 SKLVLAGDSAGASLCLTALTILRDLGI-PQPAGAVLISPWVDLTH 275
                  578999******************887.78************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 5973.97
//
Query:       CDO68139.1  [L=270]
Description: hypothetical protein BN946_scf185003.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-40  138.6   0.0    1.9e-40  138.3   0.0    1.1  1  Protoglobin  Protoglobin


Domain annotation for each model (and alignments):
>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   1.1e-44   1.9e-40       2     153 ..      81     268 ..      80     270 .] 0.98

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 1.1e-44
                  GHHHHHHHHHTT-SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSHHHHHHHCH...................HCHHHHHHHHHHHHHHHCCCSS.C CS
  Protoglobin   2 earlayllsflglteedlaaLralapliealipavvdafYekllsfpetarifet...................ssqierlkdflksyllklfsgp.f 79 
                  e+r+ayl +fl++t++d++++ ++ap +++ ip +vd +Y+kl +f++t+++f+t                   s+qi  +k f+k++ +++++++ +
   CDO68139.1  81 EDRIAYLTDFLNFTSRDAEIISKIAPSVNEIIPGMVDGMYAKLFEFDITKKVFMTrnqgfdgplpqtleeltldSAQIVFRKVFMKAWARRVLTADyS 178
                  79**********************************************************************************************77 PP

                  CHHHHHHHHHHHHHHC..............HCT--HHHHHHCHHHHHHHHHHHHCCCS...-SHHHHHHHHHHHHHHHHHHHHHHCGGGB CS
  Protoglobin  80 dsayveyldkvGkmht..............rlgleprwyiaalglvqevllealleke..klsaaektalvkalnKliwldndlaleaYv 153
                    + ++y+dkvG mht              +l++++r +  +lg++q+vl  a+l+ +  k sa+ek+++v+a+nK++w++ndl++++Y+
   CDO68139.1 179 SGKTWAYMDKVGIMHTgaspfkhqrtmgiaPLNVPYRDIAMTLGWIQTVLHSAILQLPesKCSASEKIEAVAAINKVLWIQNDLFSRHYI 268
                  889*****************************************************998899***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2013.53
//
Query:       CDO68140.1  [L=380]
Description: hypothetical protein BN946_scf185003.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.021   14.6   0.0    4.0  4  NOP19      Nucleolar protein 19
      0.073   13.2   0.0      0.073   13.2   0.0    3.6  4  G-patch_2  G-patch domain


Domain annotation for each model (and alignments):
>> NOP19  Nucleolar protein 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.4e-06     0.021      11      51 ..      12      54 ..       5      64 .. 0.81
   2 ?   -0.1   0.2     0.085   7.7e+02      93     122 ..      84     114 ..      75     118 .. 0.67
   3 ?    0.7   0.5     0.046   4.2e+02      99     113 ..     210     224 ..     203     239 .. 0.63
   4 ?    0.0   1.5     0.076   6.8e+02      93     122 ..     339     369 ..     330     372 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.4e-06
       NOP19 11 leLqaklqlsfsknnakvlsWleeseeekssss..edkeeled 51
                + Lqa++ +s++ +n+ v sW+++s+ +  sss  +d  ele+
  CDO68140.1 12 ETLQAQIDMSMALTNNIVSSWMKSSKAKLPSSSsrHDDVELEE 54
                68***********************999877773345555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.085
       NOP19  93 kkvsslakkkkkkeks.skrnsiyrvskddt 122
                 +k+    kkk+++e++ ++ +s  r  k+++
  CDO68140.1  84 NKLTGQGKKKREREDDdAEAESRARTGKSGS 114
                 5566666666665554477777777777665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.046
       NOP19  99 akkkkkkeksskrns 113
                 akkkkkk++++++n 
  CDO68140.1 210 AKKKKKKKHKAETNR 224
                 566666666544443 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.076
       NOP19  93 kkvsslakkkkkkeks.skrnsiyrvskddt 122
                 kk     kkkkk+ ++  +  ++ +v+k+d+
  CDO68140.1 339 KKRRKRKKKKKKALTHpMTDADAIKVDKGDA 369
                 4444444444444433567777888888875 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.2e-06     0.073      35      59 ..      44      68 ..      32      70 .. 0.76
   2 ?   -1.6   0.6      0.32   2.9e+03      31      54 ..      89     113 ..      84     118 .. 0.53
   3 ?   -1.6   1.2      0.34   3.1e+03      31      51 ..     210     230 ..     207     232 .. 0.59
   4 ?   -1.2   0.1      0.26   2.3e+03      43      51 ..     338     346 ..     316     355 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-06
   G-patch_2 35 knkkgrvkpeepkrRpgrlGLGakp 59
                ++  ++v+ ee++rRp+rlG Ga +
  CDO68140.1 44 SSRHDDVELEEYTRRPARLGVGAAA 68
                3344459***************975 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.32
   G-patch_2  31 qgigknkkgr...vkpeepkrRpgrlG 54 
                 qg++k   +r    +++e + R+g+ G
  CDO68140.1  89 QGKKKR--EReddDAEAESRARTGKSG 113
                 333333..3333345556666666666 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.34
   G-patch_2  31 qgigknkkgrvkpeepkrRpg 51 
                  +++k+kk++ ++   + Rp 
  CDO68140.1 210 AKKKKKKKHKAETNRLESRPN 230
                 455566666666666666765 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.26
   G-patch_2  43 peepkrRpg 51 
                 p++ ++R++
  CDO68140.1 338 PKKRRKRKK 346
                 222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 2628.93
//
Query:       CDO68141.1  [L=398]
Description: hypothetical protein BN946_scf185003.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-26   92.8   0.1      3e-26   92.5   0.1    1.1  1  SIP1      Survival motor neuron (SMN) interacting protein 1 (


Domain annotation for each model (and alignments):
>> SIP1  Survival motor neuron (SMN) interacting protein 1 (SIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.1   1.7e-30     3e-26       7     194 ..      33     333 ..      29     375 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.7e-30
        SIP1   7 pddesgpPedgeeYLrrVryEakrcpdVvva.kidpsklakkqtvympsipeiakcp.esllPtkeWeqeqladFselRqklsalreelqkkekkqkik 103
                 pd  +g P+dg++YL  Vr++a+ +p V ++ +  p  +  + ++  p+ +  ++ p + +lP++eW++++l+ F+++R+     + +++ +  +++ k
  CDO68141.1  33 PDTFDGVPMDGLQYLFTVRRDARMLPHVTRVaN--PYDVP-EVSAAAPQPGPSEPRPrRDVLPSEEWRETFLRRFKNFRKNSV--QPTIHVHIPNSTSK 126
                 5667899*********************99844..43333.3345556666566555599********************544..45566665555444 PP

        SIP1 104 .lpkikdeekwkefclge................................................................................. 120
                  +p+ k+++ w  f++g+                                                                                 
  CDO68141.1 127 lMPDKKERDLWWAFLAGRpksewnppkkakqakvsrwqqrkqkgransafpddlyedaslsydapenggseagtsgvslevvpemrsmdaaetlptpsg 225
                 0566666666***************************************************************************************** PP

        SIP1 121 ..........................gnePllsillsldqvtveslleyliewle........eeeelskelaqWlyallavlekPLdadtcsalRsll 185
                                             eP+   ++++d++  ++ll y ++w++           +++++ a+W+++ll +++  +++d  s+lR+l+
  CDO68141.1 226 tpappdvsadvsmtsegvrdvptvylPREPTPALMQQIDHRYAMHLLMYFTHWINvrleqpsmPLGDITQSHARWMFTLLSRVDDWITSDETSLLRNLA 324
                 **************************77***************************7666665555566677**************************** PP

        SIP1 186 rkcaklRae 194
                 r c++   e
  CDO68141.1 325 RACISYMVE 333
                 ***986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3084.18
//
Query:       CDO68142.1  [L=199]
Description: hypothetical protein BN946_scf185003.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-12   45.9   0.6    7.4e-12   45.9   0.6    2.0  3  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
      0.021   14.6   1.7       0.12   12.2   0.1    2.1  2  BetaGal_dom2  Beta-galactosidase, domain 2


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.6   8.3e-16   7.4e-12       1      93 []      20     114 ..      20     114 .. 0.95
   2 ?   -1.2   0.3      0.41   3.7e+03       1      12 [.     140     151 ..     117     171 .. 0.68
   3 ?   -1.5   0.3      0.51   4.6e+03       3      14 ..     142     153 ..     140     183 .. 0.62

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 8.3e-16
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesgga.Yflqivsesne..giynySdrFti 93 
                   t+P++++ +t + p  ++W++++td  ++t+vL ++s  +++s + +a+ ++ + g++t+++p++ +++g+ + +++v+++++   i+++Sd Fti
    CDO68142.1  20 TEPTNSTGWTTSGPNVVAWTSVSTDRANFTIVLDNQSV-SPESSQVLAALVDAKLGKVTVNPPSGGWKAGTgFRVNLVQDAENlsAILAQSDIFTI 114
                   78************************************.*************************99988855******8877778999******98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.41
  GPI-anchored   1 tsPssgevvtag 12 
                   t+P+++++v+ag
    CDO68142.1 140 TVPAASSTVPAG 151
                   334444444444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.51
  GPI-anchored   3 Pssgevvtagkp 14 
                   P+++++v+ag++
    CDO68142.1 142 PAASSTVPAGST 153
                   666666666543 PP

>> BetaGal_dom2  Beta-galactosidase, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.3e-05      0.12       5      65 ..      20      79 ..      16      85 .. 0.83
   2 ?    1.6   0.1     0.023   2.1e+02      34      69 ..     112     146 ..      98     150 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
                  ---BSS.SS.BS-TTEEEEEEE-.STT-EEEEEEESSTT---EEEE-EEEEETT.EEEEE- CS
  BetaGal_dom2  5 ervgngtsyttsnsaiavtelrnpdtkasFyvvrhadysslestsfklkvnTsaaGnltiP 65
                  ++ +n+t++tts ++++++   + +++a+F++v  +++ s es++    +   + G++t+ 
    CDO68142.1 20 TEPTNSTGWTTSGPNVVAWTSVS-TDRANFTIVLDNQSVSPESSQVLAALVDAKLGKVTVN 79
                  567999**************988.89********999999888887766666657999985 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.023
                   EEEEEESSTT---EEEE-EEEEETT.EEEEE-TTSS CS
  BetaGal_dom2  34 FyvvrhadysslestsfklkvnTsaaGnltiPqlgg 69 
                   F++   ++++ ++sts   + +T  +G lt+P  ++
    CDO68142.1 112 FTISSSTSSTFSSSTSGLASGTTG-SGVLTVPAASS 146
                   555555555555555555555555.7******8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1396.35
//
Query:       CDO68143.1  [L=299]
Description: hypothetical protein BN946_scf185003.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-50  169.0   0.0    9.4e-50  168.7   0.0    1.1  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
    6.5e-20   71.0   0.1      2e-19   69.4   0.0    1.9  2  QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   0.0   1.1e-53   9.4e-50       1     169 []     120     293 ..     120     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 1.1e-53
                 HHHHHHHHHHHHHCT..SSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksa..kvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevl 97 
                 iAt+++++++ a+    +  i++TRkttPg+rl+eky +l+GG d hr +Ls+m+++kdnhi+ +gsi++++k++r++ ++ + +evev s++e++e++
  CDO68143.1 120 IATQSKKYKDMARACgyQGIIAGTRKTTPGFRLVEKYGMLVGGIDPHRHDLSSMIMLKDNHIWSCGSITNVIKQARKVGGFSLLLEVEVGSEAEADEAI 218
                 9***********99988******************************************************************9*************** PP

                 HHT-SEEEEES--HHHHHHHHHHHHHHSTT...SEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C  98 eaeadiimLDnfsveelkkaveelkeknkr...vlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                  a+adi+mLDn++  el+ ++ +lk k++    +l e+SG++t+ n++e a  ++d++s++a+++sv+ +D+slk
  CDO68143.1 219 DAGADIVMLDNIEGAELAGVARRLKDKWQGkrkFLFESSGNITEANLHERAINEIDILSTSAVHQSVQHIDFSLK 293
                 **************9999999998666554467****************************************97 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   2.3e-23     2e-19      25      89 .]      55     118 ..      41     118 .. 0.97
   2 ?   -3.6   0.0       1.4   1.2e+04      27      43 ..     137     153 ..     134     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 2.3e-23
                 SSSEEE-SHHHHHHHHHHHTTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N  25 keegvvaGlevaeevfellpglevellvkDGervekgdvlleieGnarallsaERvaLnllqrlS 89 
                 k+ +++aG +++ evf++l g++ve+++++G+++e+ + +++++G+ar++l +ERvaLn+l r+S
  CDO68143.1  55 KQTAILAGAPFFTEVFTQL-GCQVEWHMQEGDTFEPVKHVATVRGKARHILLGERVALNMLARCS 118
                 899****************.*******************************************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.4
                 SEEE-SHHHHHHHHHHH CS
   QRPTase_N  27 egvvaGlevaeevfell 43 
                 +g++aG+      f+l+
  CDO68143.1 137 QGIIAGTRKTTPGFRLV 153
                 68999998777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2055.58
//
Query:       CDO68144.1  [L=395]
Description: hypothetical protein BN946_scf185003.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-23   82.1   0.3    1.2e-16   61.3   0.0    2.5  2  Amidohydro_2  Amidohydrolase
  ------ inclusion threshold ------
       0.21   10.9   0.0       0.81    9.0   0.0    1.9  3  TatD_DNase    TatD related DNase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   1.4e-20   1.2e-16       1     206 [.       8     263 ..       8     306 .. 0.76
   2 !   18.3   0.1   1.7e-07    0.0015     241     291 .]     336     393 ..     333     393 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.4e-20
                   EEEEEEE..SHHH..................................CCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHH CS
  Amidohydro_2   1 iDvHaHllppeaa..................................irddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaraviva 63 
                   iD H+H++ p +a                                    +    +++d +e+l+fm+r+ +d+       ++++n   ++  a   +
    CDO68144.1   8 IDIHTHVYLPRYAaflrsrasvpriltrtspegrqeerllilddepsSGRPIGAQYWDRDEKLKFMDRHAIDVS-----VVSSANPWLDFLPASTAH 99 
                   9***********9**************************98888755333334456778888999999999999.....555555555666666666 PP

                   HHHHHHHHH...........HHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE. CS
  Amidohydro_2  64 alcrgannr...........vlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdiht 149
                   +l+ ++n++                 kr  +f+ ++ v+  + e+ +   e  ++ + +kGv ++++  g+ l++ +l+ p+++a+e  gl+v++h 
    CDO68144.1 100 QLAGELNDDletycstgpslSHITGVKRLYGFGLLPLVPEASTEAIISTVEQIAKLPHLKGVIMGTRGLGKGLDDNALE-PVWAAIEQAGLVVFLH- 194
                   666666666333333332213355555555555555555555555555555555788**********************.****************. PP

                   ...................CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTTTTCHHHHHHHHHHH CS
  Amidohydro_2 150 Gps................pewlfggpqettraiqplllsgvarkfPnlkivlaHgGgpserlraalellarr 206
                    p                  +  +g+p ett+a+ +l+lsgv++++P+l++ laH Gg+   l+++  +la +
    CDO68144.1 195 -PHygvdknawgekenghvLPLALGFPFETTIATTRLILSGVFDRHPSLRLLLAHSGGA---LPQLSSRLASC 263
                   .5578888888999999989999************************************...66666666554 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.7e-07
                   -GGGEEEE--BTSTTSTSCTTHHH.HCHHHHH......SSHHHHHHHHTHHHHHHCTB CS
  Amidohydro_2 241 gpdrilfGsDyPhptleaepeala.lldlval......lsdeerekilggNAarlygl 291
                   g  r+lfG+D P+ ++    e ++  ++++++       sd+e++++ ggNA +l++l
    CDO68144.1 336 GTRRMLFGTDHPFFPPLGATEKWKsVVENLEAidgvwgWSDAEKDAVRGGNAFALFNL 393
                   779*********99997777777633333333777*******************9976 PP

>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.54   4.8e+03       1      12 [.       8      19 ..       8      40 .. 0.77
   2 ?   -1.5   0.0      0.14   1.3e+03      56      98 ..     128     170 ..      76     185 .. 0.82
   3 ?    9.0   0.0   9.1e-05      0.81     197     254 ..     337     391 ..     306     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.54
                EEEEE-TTSCCC CS
  TatD_DNase  1 iDaHcHldskef 12
                iD H+H+  +++
  CDO68144.1  8 IDIHTHVYLPRY 19
                899*99988665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.14
                 EEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEEET CS
  TatD_DNase  56 yavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGLDy 98 
                  + +G+ P   +  +e  + +++++a++ h k v  G  GL +
  CDO68144.1 128 LYGFGLLPLVPEASTEAIISTVEQIAKLPHLKGVIMGTRGLGK 170
                 4667777766666688888999999888888888888888866 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 9.1e-05
                 GGGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  TatD_DNase 197 ldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlf 254
                  +r+L +TD+P++ p    g+  + + v + +e++  +++++ +e  ++   Na +lf
  CDO68144.1 337 TRRMLFGTDHPFFPP---LGATEKWKSVVENLEAIDGVWGWSDAEKDAVRGGNAFALF 391
                 679************...7899999999999999999999999998888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2730.60
//
Query:       CDO68145.1  [L=1141]
Description: hypothetical protein BN946_scf185003.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-56  190.8   0.0    2.6e-56  190.8   0.0    2.1  3  ECH_1          Enoyl-CoA hydratase/isomerase
    4.4e-28   98.8   3.8    6.6e-27   94.9   0.1    3.6  3  ECH_2          Enoyl-CoA hydratase/isomerase
     0.0078   15.8   2.4     0.0078   15.8   2.4    2.0  1  NRBF2          Nuclear receptor-binding factor 2, autophagy r
  ------ inclusion threshold ------
      0.026   14.6  12.2          1    9.5   5.9    2.8  2  Cep57_CLD_2    Centrosome localisation domain of PPC89
       0.32   11.0   4.4       0.23   11.5   1.1    2.3  2  DUF1515        Protein of unknown function (DUF1515)
       0.34   11.6   3.2       0.59   10.8   2.2    1.9  2  YabA           Initiation control protein YabA
       0.37   10.3   5.0       0.67    9.5   5.0    1.4  1  HAUS-augmin3   HAUS augmin-like complex subunit 3
       0.46    9.0   9.5       0.83    8.1   9.5    1.3  1  FUSC           Fusaric acid resistance protein family
       0.48   10.9   7.6        0.2   12.1   3.9    2.2  2  ZapB           Cell division protein ZapB
        1.6    7.6   5.7        2.6    6.9   5.7    1.2  1  Spc7           Spc7 kinetochore protein
          5    7.2   5.9        2.2    8.4   1.8    2.3  2  COG2           COG (conserved oligomeric Golgi) complex compo


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.1       1.9   3.1e+03     177     223 ..      18      63 ..      16      77 .. 0.67
   2 ?   -3.6   0.2       3.3   5.3e+03     181     203 ..     101     123 ..      93     130 .. 0.75
   3 !  190.8   0.0   1.6e-59   2.6e-56       5     250 ..     892    1140 ..     888    1141 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
                 GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS
       ECH_1 177 eqlleealelaeklaekspaalrqlkealnakle.dalaeqleaeakl 223
                 e l++e  +l++ la+  +++++ + +a++++ e +a++e lea  ++
  CDO68145.1  18 ESLQQELANLLASLARTHEKMAQIASAAYRRTDElRAKVEELEA--QN 63 
                 56888888999999977777777777777666665555555544..44 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHSCHHHHHHHHH CS
       ECH_1 181 eealelaeklaekspaalrqlke 203
                 ++ale+++++ae +++ l++l+ 
  CDO68145.1 101 DKALERVAEMAETIEELLNALMM 123
                 78888888888888888887764 PP

  == domain 3  score: 190.8 bits;  conditional E-value: 1.6e-59
                  TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEE CS
       ECH_1    5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaai 100 
                  g+  + lnrP+a+Na+s  ll+E+ + l k++ dk  r+ ++ +   + F+aGadl e+a   ka+ +++   +   +  l ++p+p+iaa+ G a+
  CDO68145.1  892 GITSLLLNRPKAKNAISLRLLKEFQECLDKVRFDKDTRVLIVRSsTVGSFCAGADLIERASMTKAQVDKFLVDLRRALGTLENLPMPTIAAIDGPAL 988 
                  788899**************************************999**************999********************************* PP

                  THHHHHHHHSSEEEEETTTE.EE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEE.ESGGGHHHHHHHHHHHHHHSCH CS
       ECH_1  101 gGGlelalacDiviaadnas.fglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkv.vpeeqlleealelaeklaeksp 195 
                  gGGlel+lacD+++a+ +   +gl+e+klG+ipgaggtq+l+r +G +kA+ ++ +++ ++aqea ++G+vd v +p+ + +++alela+++  ++p
  CDO68145.1  989 GGGLELGLACDLRVAGHSVTkIGLPEVKLGIIPGAGGTQRLTRLLGLAKAKDLIFTARVMTAQEAHQIGVVDYVsDPDSTAVDKALELAAQMSANAP 1085
                  ****************99777****************************************************95699******************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1  196 aalrqlkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250 
                  +alr++k+a+ +  +  l+ +l++e+  +e + +++d+ e lqaf+Ekr p f++
  CDO68145.1 1086 LALRAAKQAISRVPDLGLESGLDFERASYEPLLHTKDRLEALQAFKEKRSPVFKG 1140
                  *****************************************************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.2      0.34   5.5e+02     189     238 ..      61     121 ..       6     153 .. 0.46
   2 ?    0.7   0.0      0.19     3e+02     247     283 ..     826     862 ..     818     869 .. 0.84
   3 !   94.9   0.1   4.1e-30   6.6e-27       3     190 ..     895    1080 ..     893    1132 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
                 ................--------......--.--SHHHHHHHHHHHT.-S.-TTTHHHHH CS
       ECH_2 189 ssd.........eeaveevleelaeeaeeeee.eselaekreaidrlfsad.sveeiveaL 238
                  ++          +a ++ l++la +++++++ +  ++e+ +a++r+ +   ++ee+++aL
  CDO68145.1  61 AQNlrlvmanrdLHAENAELRRLAGDVSHDSDvQMVVQERDKALERVAEMAeTIEELLNAL 121
                 1111112221222222222333333333322222333344444444443222444444444 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHH CS
       ECH_2 247 ewakktletlkkrsPtslkvtleqlrrgrklsslaev 283
                 + a++ ++ ++++sP+sl +tl ++ r ++++ l+ +
  CDO68145.1 826 PTARTLTNGMSRSSPISLGATLLAIPRLERAQALDGC 862
                 567888899***************9999888777766 PP

  == domain 3  score: 94.9 bits;  conditional E-value: 4.1e-30
                  EEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEE CS
       ECH_2    3 vitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivm 99  
                   + Lnrpka Na+sl ++++++e+l++++ d++++++++++++  +fCAG D+ + ++  k++    ++f  +  +   +++++p p++a +dG ++
  CDO68145.1  895 SLLLNRPKAKNAISLRLLKEFQECLDKVRFDKDTRVLIVRSSTVGSFCAGADLIERASMTKAQV---DKFLVDLRRALGTLENLPMPTIAAIDGPAL 988 
                  578**************************************************99988888855...35**************************** PP

                  THHHHHHTTSSEEEE-TT.-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT... CS
       ECH_2  100 GgGvGlsvhgsfrvvter.tvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaeless 190 
                  GgG+ l + + +rv+  + t++  PE+++G++P  Gg+  L+rl g + ++ l  T++ +++++a ++g+ +  v++ +  a+ +aL+ + + 
  CDO68145.1  989 GGGLELGLACDLRVAGHSvTKIGLPEVKLGIIPGAGGTQRLTRLLGlAKAKDLIFTARVMTAQEAHQIGVVDY-VSDPDSTAVDKALELAAQM 1080
                  ***************986479***********************88788**********************95.5556667788777655433 PP

>> NRBF2  Nuclear receptor-binding factor 2, autophagy regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.4   4.8e-06    0.0078      89     150 ..      50     111 ..      30     123 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.8e-06
       NRBF2  89 adLkrlvelLlaenerLrkenkqLkaekaRLqkeplekeldvdaDfvekseLWgLqqasesa 150
                  +L+  ve L a+n rL   n+ L+ae+a L++ + +   d d+  v +    +L++ +e+a
  CDO68145.1  50 DELRAKVEELEAQNLRLVMANRDLHAENAELRRLAGDVSHDSDVQMVVQERDKALERVAEMA 111
                 689***********************************99***9999877666776666655 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.9   0.00061         1      24      60 ..      26      62 ..      14      82 .. 0.83
   2 ?    6.8   1.3    0.0042       6.9      21      52 ..      88     119 ..      69     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00061
  Cep57_CLD_2 24 eelkrLnkERdsalrqLgvAyeelneLkaevealrkE 60
                  +l++L++ ++ +++  + Ay++++eL+a+ve l+ +
   CDO68145.1 26 NLLASLARTHEKMAQIASAAYRRTDELRAKVEELEAQ 62
                 68999*****************************987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0042
  Cep57_CLD_2  21 vheeelkrLnkERdsalrqLgvAyeelneLka 52 
                  +h++  +++ +ERd al +  +  e+++eL +
   CDO68145.1  88 SHDSDVQMVVQERDKALERVAEMAETIEELLN 119
                  699999***********************976 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   0.00014      0.23       9      59 ..      16      66 ..       9      87 .. 0.85
   2 ?   -0.3   0.3      0.63     1e+03      12      50 ..      72     122 ..      64     132 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
     DUF1515  9 qlgtllaevkelredlkrsedrsdasrakmyrkmdelvervtalegsvvkl 59
                +l++l++e+ +l   l r+ ++ + + +  yr++del  +v+ le+   +l
  CDO68145.1 16 NLESLQQELANLLASLARTHEKMAQIASAAYRRTDELRAKVEELEAQNLRL 66
                67899********************************99999999875544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
     DUF1515  12 tllaevkelredlk............rsedrsdasrakmyrkmdelvervt 50 
                 +l ae  elr+               +  d++    a+m + ++el++ + 
  CDO68145.1  72 DLHAENAELRRLAGdvshdsdvqmvvQERDKALERVAEMAETIEELLNALM 122
                 566666666654442223333333333333433334444444444444444 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.5   4.1e+03      10      34 ..      17      41 ..      14      51 .. 0.63
   2 ?   10.8   2.2   0.00036      0.59      15      75 ..      47     106 ..      34     121 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.5
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 10 leeleeqleelleeleelkeelael 34
                le+l+++l++ll++l++ +e++a++
  CDO68145.1 17 LESLQQELANLLASLARTHEKMAQI 41
                5566666666666666666666554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  15 eqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLar 75 
                 ++++el +++eel+++  +l+  n++L++en +lr++   + +++++ +  ++e  + L+r
  CDO68145.1  47 RRTDELRAKVEELEAQNLRLVMANRDLHAENAELRRLA-GDVSHDSDVQMVVQERDKALER 106
                 56789999***************************998.3334444444444555455544 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.0   0.00041      0.67      79     151 ..      16      88 ..       6     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00041
  HAUS-augmin3  79 sleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlt 151
                   +le L+qel +L    a+  +++ ++  +a  +++elr+  ee ++++ +l  a+++l aenae++++  +++
    CDO68145.1  16 NLESLQQELANLLASLARTHEKMAQIASAAYRRTDELRAKVEELEAQNLRLVMANRDLHAENAELRRLAGDVS 88 
                   589999**********************************************************988766655 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.5   0.00051      0.83     216     322 ..      12     125 ..       3     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00051
        FUSC 216 araralrrllsrmlallallsslarllarlraeeaaavpelaallaelaal..eaaaaaealeaalaalrarlralrrale.....adadtaalllarl 307
                    + l +l++++++lla+l  +++ +a+  ++  ++++el+a ++el+a   +   a  +l+a+ a+lr+ + +++++ +     +++d a + +a++
  CDO68145.1  12 SGLGNLESLQQELANLLASLARTHEKMAQIASAAYRRTDELRAKVEELEAQnlRLVMANRDLHAENAELRRLAGDVSHDSDvqmvvQERDKALERVAEM 110
                 5667899*******************************************8774445567777777777777777777776566666666666666666 PP

        FUSC 308 aellaelaqllaslr 322
                 ae+++el+++l   +
  CDO68145.1 111 AETIEELLNALMMSE 125
                 666666666555444 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       1.4   2.2e+03      20      44 ..      17      41 ..      11      49 .. 0.68
   2 ?   12.1   3.9   0.00012       0.2      19      70 ..      48     115 ..      36     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
        ZapB 20 itlLqmeieeLkeeneelkeenrel 44
                +++Lq+e++ L +  +   e+++++
  CDO68145.1 17 LESLQQELANLLASLARTHEKMAQI 41
                5677777777777666666666655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
        ZapB  19 titlLqmeieeLkeeneelkeenreleeeneqlk................eereawqerlkkLLgkle 70 
                 + ++L+ ++eeL+++n  l   nr l +en +l+                +er +  er+  + + +e
  CDO68145.1  48 RTDELRAKVEELEAQNLRLVMANRDLHAENAELRrlagdvshdsdvqmvvQERDKALERVAEMAETIE 115
                 5689******************************999***9999999999999999999988776666 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.7    0.0016       2.6     165     262 ..      17     113 ..       7     136 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
        Spc7 165 ldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                 l++l +el +  a+l +++ek+ + a   +    +eL++  eel++++  +   +++l   +++l +l+ ++++ ++    ++e+ ++ erv e+ + 
  CDO68145.1  17 LESLQQELANLLASLARTHEKMAQIASA-AYRRTDELRAKVEELEAQNLRLVMANRDLHAENAELRRLAGDVSHDSDVQMVVQERDKALERVAEMAET 113
                 3333334444444444444444332222.222345555555555555555555555555555555555555555444444444444444444444333 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.8    0.0014       2.2      62     110 ..      15      63 ..      14      83 .. 0.89
   2 ?   -0.6   0.2      0.79   1.3e+03      78     104 ..      93     119 ..      71     133 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
        COG2  62 ghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakele 110
                 g+L +lq+el ++  +la++ +k+ ++ ++  +r  e+++k+ee ++ +
  CDO68145.1  15 GNLESLQQELANLLASLARTHEKMAQIASAAYRRTDELRAKVEELEAQN 63 
                 68*****************************************998654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.79
        COG2  78 laaarkkvesvreklsereeeveskle 104
                 ++ ++++ +++ e ++e+ e++e+ l+
  CDO68145.1  93 VQMVVQERDKALERVAEMAETIEELLN 119
                 222333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1603  (0.0894082); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                       178  (0.00992805); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.51u 0.42s 00:00:01.93 Elapsed: 00:00:00.60
# Mc/sec: 5715.95
//
Query:       CDO68146.1  [L=881]
Description: hypothetical protein BN946_scf185003.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-208  695.2   0.1   4.3e-173  577.5   0.0    2.9  2  Sec10          Exocyst complex component Sec10
     0.0062   15.2   2.0      0.014   14.1   2.0    1.6  1  Peptidase_S46  Peptidase S46
     0.0072   16.4   1.2      0.028   14.4   1.2    2.0  1  DUF1664        Protein of unknown function (DUF1664)
  ------ inclusion threshold ------
      0.016   15.4   1.8       0.09   13.0   0.2    2.5  2  I_LWEQ         I/LWEQ domain
      0.049   12.5   1.3      0.058   12.3   0.2    1.6  2  DUF812         Protein of unknown function (DUF812)
       0.27   10.8   3.5       0.55    9.8   3.5    1.5  1  Filament       Intermediate filament protein
        4.2    7.7   7.5        6.3    7.1   3.7    2.8  2  OmpH           Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.5   0.0  1.7e-176  4.3e-173       1     618 [.     100     698 ..     100     701 .. 0.89
   2 !  112.8   0.0   6.4e-36   1.6e-32     615     707 ..     713     805 ..     709     808 .. 0.97

  Alignments for each domain:
  == domain 1  score: 577.5 bits;  conditional E-value: 1.7e-176
       Sec10   1 lqevvdsfnqLddkisevgqtavklgeqLesadkqrqraseaaeLiefykeflssgetsklellfkkskdpekklkaAqiarkLlaiskeldelekaen 99 
                 +++v++sf+ +++k++evg+ta+++geq+es+++qrqra+ a +Li fy +f ++ + +  + l kk+++ e++ k A+++r+L++ +ke+ +l++a +
  CDO68146.1 100 FEAVGQSFSGMESKMNEVGRTAIRIGEQMESVHQQRQRAQAAYDLIDFYGQFAKDDT-TRIDAL-KKEGK-EGRRKVAVLLRRLATVAKEV-DLPNADK 194
                 57899*********************************************9888886.999999.55555.59******************.******* PP

       Sec10 100 trekiekyaerlEkelLkeFdkayrkedfermkeiAkvLqefnggasvvqlfvnqhdffidkdkldeangiesseiwekladpdeapskveeslqalfs 198
                 tre+i++y+e++Ek++L  Fd+ayr+ d+++m+++A++L +fnggas+vq++vnqhdffi  +++ e++ i+ +  we+l dpd+ p+++e++lq+lf 
  CDO68146.1 195 TRENIDRYCEKFEKDMLHLFDRAYRRGDPKMMHHCAQTLLDFNGGASCVQVYVNQHDFFI--NRVAESTAID-DLLWETLPDPDAPPPVSETGLQELFA 290
                 ************************************************************..8998999988.66************************ PP

       Sec10 199 eiretvkeeaeiikrVFpnpekVmqtFlqrvfaqviqqrlealLdkassi.sqlayLraLhslysstlkLvkdLkey..lsteeidgssalsalLdqsv 294
                 eir+tv +ea+i+++VFpnp+ Vmq+Flqrvfaq++    + +L +  +  +  +   ++  +   ++ + +++k      t++ +++   sa+L++ +
  CDO68146.1 291 EIRTTVGQEAQIVQAVFPNPAYVMQVFLQRVFAQSLVHQQTSILVEDLKAyELPS---VVPRSPVDANGFDRTVKGTpaPATTNTATAATISAMLETAM 386
                 ***********************************87777777766664423333...444444445555555544422244455666668******** PP

       Sec10 295 eelFvpylegdsYlerEkksLeelyaellskFttlheqsasakslk.......nkvkkklatsfkaslsasklaassktkqinraasstlskskkrael 386
                 eelFvpy eg++Yle E+ksL elya  l kFt++he+   +  ++       ++  + +at++   +s+++ +a++++ +++ + ss     + r   
  CDO68146.1 387 EELFVPYTEGQRYLEKESKSLGELYAMYLAKFTRYHERTDTK-GKSsmfgrmvDQLSAAAATTSTSGTSTTSAQAAAALMRFGGLSSS-----TDR--- 476
                 ************************************993333.333358666666666666666666656666666666666666664.....334... PP

       Sec10 387 ketaatsakaaknedeleeedsllslevaesllkwaaeslgRaveLsspsevpkaveallelLlsalgkeYvetaLdaalaaltaqeiaektevpdlsf 485
                        ++++  +d + eed+lls+ vae++lkw+ae++gR+veLs + +vpk+++all++L  a+ ++Y+etaL+ ++a+l a++   kte p+++ 
  CDO68146.1 477 -------GPEKAGDDPVREEDGLLSVAVAEKMLKWHAEAIGRCVELSPSGDVPKHTFALLRVLSAAIANSYIETALETVQARLDAAD--SKTE-PSMQP 565
                 .......4667799*************************************************************************..8888.***** PP

       Sec10 486 levvrsvdliisllqvyiktillpllsdspdirremvkeknsflsrlEekvnaglqktidvvvgeveyllskqkknDFrpknddlamerqpTeaCkeiv 584
                 l+v+r+vdli++l+q+y++ +llpl+s+s++irremv+++n+ +sr+E+++n++ qk  d++++++   l+kqk++DF+p+nddl+++r +Te+C++++
  CDO68146.1 566 LSVLREVDLICHLWQRYVTMALLPLASSSVTIRREMVIFNNQTVSRIEGAANQVTQKLTDAIINWLAAQLAKQKRTDFKPRNDDLSFARVNTEPCVACC 664
                 *************************************************************************************************** PP

       Sec10 585 efLssvhsalkeslsgsnlesflteiGlrlhklL 618
                 ++L++v +a+k  lsg+nle+flte+G+++h+++
  CDO68146.1 665 DMLEKVRDAAKANLSGKNLEVFLTEVGVAFHGFV 698
                 *******************************976 PP

  == domain 2  score: 112.8 bits;  conditional E-value: 6.4e-36
       Sec10 615 hklLleHlkkftvsseGGlmltkDlneYqdavksfkipelsekFelLrelgnlfiVqpevlkslvregalakldrelireyiqrReDykkekl 707
                 ++lLleHlkkf vs++GGlml kDl  Yqd++++f+ip+l e+Fe +r+lgn+f+V+p+ lks+++eg l+++d++l+r+y+++R+D+ ++++
  CDO68146.1 713 IRLLLEHLKKFPVSATGGLMLAKDLKTYQDTIDTFSIPSLHERFEFIRQLGNVFLVKPDILKSYITEGYLGRIDANLLRPYLAQRSDWGQAEK 805
                 689*************************************************************************************99875 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.0   5.5e-06     0.014     267     441 ..      58     231 ..      51     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.5e-06
                    HTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHHHHHHHHHHHHHCT-H.HHHTTHHHHHHHHHH CS
  Peptidase_S46 267 dvalparievleeriallkeemkkdpeirikyasklagleNylKnliGmlealkkk.kvlekkqaeeaalrawlkkdpekkekygkalselealvk 361
                    + a ++ i v+++ +a  +++ k+   +++ y +k+a+l++ + ++    ++++ k + +++ + +  + ++ ++++ ++   +++a + ++ + +
     CDO68146.1  58 EAAVDKLIAVRKDVQAKTEQMEKSVRVAERDYSKKMAELNRGFEAVGQSFSGMESKmNEVGRTAIRIGEQMESVHQQRQR---AQAAYDLIDFYGQ 150
                    666778889999999999999999999999**********9999998888888754144555555555555555555554...4555555554433 PP

                    .HHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH....HH-HHHHHHHHHHHHHHCHHHHCS--HHHHHHHHHHHHH CS
  Peptidase_S46 362 .ekrklaersalleeaessgsellslarklvrlaeerekpdaereeeyqeralealekeleridkdldaevdkavlaallk 441
                     +k+++++ +al +e + ++ +++ l r+l ++a+e + p+a++++e  +r  e++ek++ + + + ++  d +++ +  +
     CDO68146.1 151 fAKDDTTRIDALKKEGKEGRRKVAVLLRRLATVAKEVDLPNADKTRENIDRYCEKFEKDMLHLFDRAYRRGDPKMMHHCAQ 231
                    1456677788888999999999****************************************9999999999988877655 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.2   1.1e-05     0.028      42     109 ..      67     134 ..      61     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109
                 + ++v  + eq+ +s++ + r+ s++++++++  +++ +  + ++++++ev +   +ige++esv++ 
  CDO68146.1  67 VRKDVQAKTEQMEKSVRVAERDYSKKMAELNRGFEAVGQSFSGMESKMNEVGRTAIRIGEQMESVHQQ 134
                 567899999*********************************************************86 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.5e-05      0.09      37      92 ..      59     114 ..      38     186 .. 0.76
   2 ?    0.7   0.1      0.21   5.4e+02      67     102 ..     605     641 ..     599     658 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
      I_LWEQ  37 akeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkav 92 
                 a+ ++Li++ k v+a+t q+  + rv  ++ sk++++L++  +aV ++ + + +++
  CDO68146.1  59 AAVDKLIAVRKDVQAKTEQMEKSVRVAERDYSKKMAELNRGFEAVGQSFSGMESKM 114
                 6789**********************************666665555444333333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.21
      I_LWEQ  67 nskslkrLeaaskaVkka.tkelvkavkeakekqeee 102
                 n+++ +r+e a+++V++  t+++++   ++ +kq++ 
  CDO68146.1 605 NNQTVSRIEGAANQVTQKlTDAIINWLAAQLAKQKRT 641
                 789999*********9763677777655555555443 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.2e-05     0.058     317     415 ..      78     176 ..      16     184 .. 0.81
   2 ?   -3.2   0.1       1.1   2.8e+03     178     226 ..     401     450 ..     368     470 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
      DUF812 317 kaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvel 415
                  +++   ++   +++++el++ +e++ ++ + +e++++++  +  ++ e++e   +++++ ++ ++l     + ++d+ + i +L+++ ++ ++++  l
  CDO68146.1  78 MEKSVRVAERDYSKKMAELNRGFEAVGQSFSGMESKMNEVGRTAIRIGEQMESVHQQRQRAQAAYDLIDFYGQFAKDDTTRIDALKKEGKEGRRKVAVL 176
                 223333344556899***********************************************************************9988888887655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
      DUF812 178 kenskelkefyke.llplvtaqlssraslvpslleenaaelaaeqeweee 226
                 ++ sk+l e+y++ l ++   + + +++ ++s++ +   +l+a+ +  ++
  CDO68146.1 401 EKESKSLGELYAMyLAKFTRYHERTDTKGKSSMFGRMVDQLSAAAATTST 450
                 44455555566664444444444555555555555555555554444433 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00021      0.55     167     280 ..      64     175 ..      55     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 167 Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqekls 265
                 L ++ k+++a+ e++ ek+ + ae+ y++k++el++  e  +++ + +++ ++e+ r+  +   ++es+++q++  +a+  +l + + + +++    ++
  CDO68146.1  64 LIAVRKDVQAKTEQM-EKSVRVAERDYSKKMAELNRGFEAVGQSFSGMESKMNEVGRTAIRIGEQMESVHQQRQRAQAAY-DLIDFYGQFAKDDTTRID 160
                 555667888887765.7788899*********************************************999999888764.455555555566666677 PP

                 HHHHHHHHHHHHHHH CS
    Filament 266 eleeelaeireemar 280
                 +l +e +e r+++a 
  CDO68146.1 161 ALKKEGKEGRRKVAV 175
                 777777777766665 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.7    0.0025       6.3      20      80 ..      60     139 ..      55     202 .. 0.63
   2 ?    0.7   0.1      0.24   6.2e+02       6      74 ..     371     443 ..     368     464 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.............-HHHHHH.......HHHHHHHHHHHHHHHH CS
        OmpH  20 aqeqlekkfkklqaeleakekelqklqeelqkkakkl.e...........keekeqe.......lqkkeqelqqkqqqka 80 
                 a ++l + +k+ qa+ e++ek+++ +++++ kk+++l              e k +e       + ++++ + q++q+++
  CDO68146.1  60 AVDKLIAVRKDVQAKTEQMEKSVRVAERDYSKKMAELnRgfeavgqsfsgMESKMNEvgrtairIGEQMESVHQQRQRAQ 139
                 55555555566666666666666666666655555543353344446666555555544444443333333333222222 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
                 -HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...-HHHHHH...HHHHHHHHHH CS
        OmpH   6 dvqkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e.keekeqe...lqkkeqelqq 74 
                 +++++ + s   ++a+e+l   +++ q  le++ k+l +l++ + +k     e + + + +   + +++++l +
  CDO68146.1 371 NTATAATISAMLETAMEELFVPYTEGQRYLEKESKSLGELYAMYLAKFTRYhErT-DTKGKssmFGRMVDQLSA 443
                 55555566667778888888888999999***********999975444432232.222223556666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 5573.21
//
Query:       CDO68147.1  [L=672]
Description: hypothetical protein BN946_scf185003.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-108  359.9   6.9     1e-107  359.5   6.9    1.2  1  Ytp1      Protein of unknown function (Ytp1)
    4.6e-15   55.3   0.6    4.6e-15   55.3   0.6    2.3  2  DUF2427   Domain of unknown function (DUF2427)


Domain annotation for each model (and alignments):
>> Ytp1  Protein of unknown function (Ytp1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.5   6.9  1.1e-111    1e-107       2     276 ..     373     655 ..     372     656 .. 0.94

  Alignments for each domain:
  == domain 1  score: 359.5 bits;  conditional E-value: 1.1e-111
        Ytp1   2 afvqvltgvvvllglgrgeevfnllAHfikGgvFflyGlltlarylGafaelGwaWnkkpkksksekrivsaefveslliflYGitnvFlEhlagkgg. 99 
                 +fvqv++gvvv++g +rg +++ +lAH+ikGg+F++yGl t+ar+lG+f+e+GwaWn+ p+++    + ++aefvesl+iflYGitn+++E++++++g 
  CDO68147.1 373 GFVQVISGVVVYTGGCRGGAINICLAHLIKGGIFWCYGLATFARFLGSFSEIGWAWNRAPRHH---GKYPTAEFVESLVIFLYGITNTWMERFGANPGd 468
                 79*********************************************************9954...367*************************99998 PP

        Ytp1 100 ewsakdlqHvsiavlfiggGllGlllesklvrkllekaveeaak........eaeek..akvslnplPalvilltGilmsaHaQaselstkiHkqwGll 188
                 ++++k+lqH+siav+f+++Gl+G+ +esk+vr++l++ +++a           ae +  + +s+np+Pal+i +tG +msaH Q++ ++++iH++wG+l
  CDO68147.1 469 PYTTKQLQHISIAVMFWFAGLVGMGIESKRVRRWLAAGATAAVPastrsqeaVAE-PpsYVASFNPFPALCIGITGAAMSAHFQTYLFQVQIHMLWGYL 566
                 ***********************************99888776667776664222.23567************************************** PP

        Ytp1 189 LlaaavaRlitylllllkppssvlpsrpptellasflLiagglvFmestee.tvealeeegldamfllnvtvgltallmawvllllalk 276
                 L+++av+R++ty++l+l pp+s+lpsrppte++asflL++ggl Fm ste+ tv+a+++ + d m++lnv v++t+l+++w+l+++++k
  CDO68147.1 567 LSGFAVMRCLTYFFLWLGPPRSILPSRPPTEAVASFLLACGGLEFMFSTEDlTVAAMRQGHDDVMMFLNVGVAITCLAFCWTLFIVSFK 655
                 *************************************************************************************9988 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.6   5.1e-19   4.6e-15      12     103 ..     131     222 ..     124     224 .. 0.93
   2 ?   -1.7   0.1      0.28   2.5e+03      84     102 ..     365     383 ..     355     385 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 5.1e-19
     DUF2427  12 ephksalwvHiilmtlalvvvyPvalvLslaksrwylpvqivnlvlavlglllghiykgstPelypnniyaklswillillavqvvlavllk 103
                 + + +++ +H+++m la++  +P++++L+++k+ w+ ++ i++ +l+vlgl++ ++y++ tP+ly+++ ++  + ++l + ++  v+ v+++
  CDO68147.1 131 KRYPGLMGLHALCMSLAFFGALPIGIALRSVKHAWHGVTVILFYTLVVLGLFSSALYRKLTPNLYEGSKHGPHGYFFLAIAVALSVVDVFSQ 222
                 556678999*********************************************************************99999999888876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.28
     DUF2427  84 lswillillavqvvlavll 102
                   ++l++  +vqv+++v++
  CDO68147.1 365 GERVLVFAGFVQVISGVVV 383
                 5678999999****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4380.04
//
Query:       CDO68148.1  [L=319]
Description: hypothetical protein BN946_scf185003.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-08   32.9   0.0    7.2e-08   32.1   0.0    1.5  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0     4e-12   7.2e-08      17      80 ..      58     125 ..      43     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 4e-12
                    ....--HHHHHH..HTTTTSHH.HHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHH CS
  Dimer_Tnp_hAT  17 k.sefdvlewwk..ensskyPn.lsklardvLsipvssaasErsFstlgkvllesrnsleplnveall 80 
                      +++d+le w      ++ P  l  lar++Ls+ + sa++Er Fs+ g+ l++ rn++ + ++ al 
     CDO68148.1  58 LnIPVDPLEIWDgiSIVDRGPRpLAMLARRILSVCANSASCERLFSIFGQLLTKLRNRMGSTTLSALA 125
                    25789999999988555555654899**************************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2139.46
//
Query:       CDO68149.1  [L=368]
Description: hypothetical protein BN946_scf184938.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-09   36.5   0.0    1.7e-08   35.3   0.0    1.7  1  Myb_DNA-bind_3   Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
       0.12   12.6   0.8          3    8.1   0.3    2.3  2  Thiol_cytolys_C  Thiol-activated cytolysin beta sandwich doma


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.9e-12   1.7e-08       1      95 [.      47     135 ..      47     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.9e-12
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefna.ktgakytkkqlknrlkklrkeyklvkellersgfsWDpttktvtAddevWk 94 
                     +W++e+e++l+d l + v +  +  ++ f+++ +++i++++++  tg  yt +      ++++   ++v  l++ sgf+WD+ ++ v+A ++vW+
      CDO68149.1  47 RWDSESEDFLLDGLRKAVTEAQT-GDNNFQPQVYQHIAQSLTEkGTGDPYTAE------QQFKAARNVVHYLRNLSGFGWDEGKQLVVAPEAVWQ 134
                     5*****************99999.7******************6666677654......57888899***************************9 PP

  Myb_DNA-bind_3  95 e 95 
                     +
      CDO68149.1 135 K 135
                     6 PP

>> Thiol_cytolys_C  Thiol-activated cytolysin beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.016   1.5e+02      29      77 ..      77     124 ..      63     128 .. 0.77
   2 ?    8.1   0.3   0.00034         3      16      55 ..     131     170 ..     125     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.016
                      EEEEEEE-TTTT-EBESSEEEEEEE-TTEEEEEEEEEEESSSSTCGEEE CS
  Thiol_cytolys_C  29 evvkkkeWegngkdrtakfsttiqlkgnarnirvkarevtGlawekWrt 77 
                      +v ++ + + ++k+   +++++ q+k+ arn+   +r+  G+ w++ ++
       CDO68149.1  77 QVYQHIAQSLTEKGTGDPYTAEQQFKA-ARNVVHYLRNLSGFGWDEGKQ 124
                      555666666667777789999999997.9***************98665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00034
                      EEEEEEEE-TTS-EEEEEEE-TTTT-EBESSEEEEEEE-T CS
  Thiol_cytolys_C  16 itwdevsydeegkevvkkkeWegngkdrtakfsttiqlkg 55 
                      + w+++ yd++gk+++k+ke+++  ++   +++t+ +l g
       CDO68149.1 131 AVWQKLLYDKDGKKTKKSKEYSKWRTKPFPQYDTVTELMG 170
                      68******************99987777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2637.14
//
Query:       CDO68150.1  [L=1052]
Description: hypothetical protein BN946_scf184938.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-138  462.2  13.6   1.3e-136  455.9  13.6    2.3  1  AIP3          Actin interacting protein 3
  ------ inclusion threshold ------
      0.012   16.2  14.2       0.17   12.4   1.7    4.6  4  Syntaxin-6_N  Syntaxin 6, N-terminal
      0.065   13.4   2.8       0.17   12.1   0.1    2.8  2  DIRP          DIRP
      0.072   13.3   8.3        6.5    7.1   0.8    3.9  3  WXG100        Proteins of 100 residues with WXG
        0.3   10.3   1.3       0.61    9.3   0.9    1.7  1  ISG65-75      Invariant surface glycoprotein
       0.48   10.9  13.5       0.75   10.2   0.4    4.3  4  FlaC_arch     Flagella accessory protein C (FlaC)
        2.3    8.3  11.9        1.6    8.7   5.2    3.2  3  DUF1664       Protein of unknown function (DUF1664)
        2.8    7.9   5.3        1.8    8.5   0.3    3.1  4  ApoO          Apolipoprotein O
        3.5    7.5  11.9        1.5    8.7   0.1    4.0  4  CdvA          CdvA-like coiled-coil domain
        3.7    8.3  11.1        4.7    7.9   0.1    4.5  5  KfrA_N        Plasmid replication region DNA-binding N-term
        4.3    7.6  11.3        2.2    8.6   0.5    3.4  3  DUF5082       Domain of unknown function (DUF5082)
        6.6    6.6   7.7        1.7    8.6   2.4    2.6  2  EMP24_GP25L   emp24/gp25L/p24 family/GOLD
          7    6.8   9.5        1.5    8.9   3.7    2.9  2  End3          Actin cytoskeleton-regulatory complex protein E
        7.8    6.3   6.5        5.2    6.8   2.6    2.7  2  Lectin_N      Hepatic lectin, N-terminal domain


Domain annotation for each model (and alignments):
>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.9  13.6    1e-139  1.3e-136       1     408 []     536     987 ..     536     987 .. 0.94

  Alignments for each domain:
  == domain 1  score: 455.9 bits;  conditional E-value: 1e-139
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3   1 FLqlgskvkKvvleegltiasLrllFvekFayspggedfPeiyiqDpksgvrYeLedlsdvkdrsvLsLniepldevkkhideslaslskelkelkssi 99 
                 FLq+g++vkKv++e g+++ +LrllFv+kFayspg+++fP+iyi+Dp+sgv+YeLed+++vk++ +LsLniepld++k+hid +++sl++++k+l++++
  CDO68150.1 536 FLQVGREVKKVTIEPGISLGNLRLLFVDKFAYSPGQDNFPAIYIRDPSSGVQYELEDVDEVKEKVLLSLNIEPLDQIKQHIDAQISSLQQDIKDLRTAV 634
                 9************************************************************************************************** PP

                 ..................XXXXXXXXXXXXXXXXXXXXXXXX......................................................... CS
        AIP3 100 ...............esqkaslqevserqeeaakekasesla......................................................kke 129
                                es++ + ++ se+++++++++ s+ +                                                       +++
  CDO68150.1 635 vsnrrtstiitqplaESTPIAPRP-SEQRFRDVARRISRLIPetsatpragrspspgagpmepqwtgsmlqmqhtgstlqpqmtgasvvseyttrvVSD 732
                 999999999888876555555554.555555665555555558899999999999999999999999999999999999999999999999999999** PP

                 ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXX CS
        AIP3 130 lkaqlkevqslrrdLavlrqlysefkseikeslselrekakkvkeaslastkkssnrayiekgkkkLseesdklvtkvddLqDlvedlrkDVvqRgvrp 228
                 lk+q++evq+lrrdL+++rqly+ef++++kesl +lr+++++vk  +la++k++++rayi++gk+kL+++s++++t++++LqD+ve +++DV++R+v p
  CDO68150.1 733 LKTQFDEVQNLRRDLGIMRQLYTEFMKQTKESLGTLRQQTQTVK--QLATQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQDTVEGIKDDVLKRNVSP 829
                 ********************************************..9999************************************************* PP

                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXX.XXXXXX CS
        AIP3 229 skkqlesvakeikkakkelkkleeyiktekpvWkkiWekELqkvveeqqfLtlqeeLlaDLkeDlekasevfelveqvveeqekeskrnkkskarllip 327
                 ++  l++v+ +i+++++el++l+++i+t kp+Wkk+We+ELq++veeqqfL++qee+l+DL eD++++ evf++ve++                     
  CDO68150.1 830 KSLLLKKVKGDIETVSAELQSLKDHIQTIKPMWKKTWEEELQNIVEEQQFLQHQEEFLEDLFEDHKAVVEVFGHVEKA--------------------- 907
                 ***************************************************************************964..................... PP

                 XXX.-HHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3 328 epgedlkeakdtvllevralqpdhesRleAieraeklrekelearredefqkELgeFVeekkLkksGGveEverlRkkkde 408
                 +p+e+ ++++++v++e+r++++d+e+Rl+Ai+++ek rekel a+r+defq+EL++FV +kkL+++GG+eE+er+R++k+e
  CDO68150.1 908 PPPEESQSGLSSVMMEIRSAAVDPERRLKAIAANEKNREKEL-ASRTDEFQSELTGFVAGKKLRMTGGAEEAERVRQRKNE 987
                 345678899*********************************.************************************97 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.1     4e+03       6      48 ..     135     176 ..     133     179 .. 0.73
   2 ?    8.9   0.2    0.0017       2.2      35      70 ..     605     638 ..     584     655 .. 0.79
   3 ?   12.4   1.7   0.00014      0.17       3      81 ..     754     832 ..     753     859 .. 0.83
   4 ?    0.1   0.8      0.93   1.2e+03      48      93 ..     839     885 ..     832     958 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.1
  Syntaxin-6_N   6 vkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrk 48 
                   v++ +   l+ +++  + ++r+++d +++ s+ +d+ ++ Lr+
    CDO68150.1 135 VRQIITRLLQGLRAKQSIYRRIMQDHKQR-SDGSDRDSRSLRS 176
                   66777777888888888888888887764.7777777777765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0017
  Syntaxin-6_N  35 tseeldetrteLrkalrsiewdledLeetvrivekn 70 
                   + e ld+ ++ + ++++s+++d++dL+ +v  v++ 
    CDO68150.1 605 NIEPLDQIKQHIDAQISSLQQDIKDLRTAV--VSNR 638
                   46889*************************..4433 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00014
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekel 81 
                   + e+ ++ ++sl ++++  ++ ++l +++    +  +d  + +L +  +++ +++e+L++tv+ ++ +  k ++++k l
    CDO68150.1 754 YTEFMKQTKESLGTLRQQTQTVKQLATQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQDTVEGIKDDVLKRNVSPKSL 832
                   6677888999*************99999888679****************************98888777777776654 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.93
  Syntaxin-6_N  48 kalrsiewdledLeetvriveknpsk.fkidekelsrrrafveevre 93 
                     +++++ +l+ L++ +++++   +k  + + + + + ++f+++ +e
    CDO68150.1 839 GDIETVSAELQSLKDHIQTIKPMWKKtWEEELQNIVEEQQFLQHQEE 885
                   45666666666666666666555444455555555555555554443 PP

>> DIRP  DIRP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5       1.2   1.5e+03      38      76 ..     126     164 ..     100     180 .. 0.75
   2 ?   12.1   0.1   0.00013      0.17      34      78 ..     737     781 ..     713     805 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
        DIRP  38 rkirrllgkpRrfSeaFleeEreeLeqkRekiRelqqrk 76 
                 +++ r l k R++ ++ l+  r +   +R+ +++++qr+
  CDO68150.1 126 ENLERYLPKVRQIITRLLQGLRAKQSIYRRIMQDHKQRS 164
                 566788888888888888888888888888888888884 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00013
        DIRP  34 raewrkirrllgkpRrfSeaFleeEreeLeqkRekiRelqqrkve 78 
                   e +++rr lg  R++ ++F+++ +e+L + R++ ++++q  ++
  CDO68150.1 737 FDEVQNLRRDLGIMRQLYTEFMKQTKESLGTLRQQTQTVKQLATQ 781
                 368899*************************99998888877555 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1       0.1   1.3e+02       9      31 ..     609     631 ..     602     636 .. 0.60
   2 ?    7.1   0.8    0.0051       6.5       5      79 ..     746     820 ..     742     825 .. 0.92
   3 ?    5.7   0.1     0.014        18      14      53 ..     835     874 ..     833     903 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   9 lrqaaarfqkqaeeledelqrlk 31 
                 l+q  +++++q ++l++ +++l+
  CDO68150.1 609 LDQIKQHIDAQISSLQQDIKDLR 631
                 56666666666666666666555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   5 dpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaan 79 
                 d   +rq  ++f kq +e  + l++  ++v++l+ +  G a+   +   ++++   q++ +++ee++++++ +++
  CDO68150.1 746 DLGIMRQLYTEFMKQTKESLGTLRQQTQTVKQLATQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQDTVEGIKD 820
                 566799***************************************************************998876 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHH CS
      WXG100  14 arfqkqaeeledelqrlkaevdalqsgWsGaaadafqaef 53 
                 +++++  e++++elq+lk +++ ++ +W+ +  ++ q+  
  CDO68150.1 835 KKVKGDIETVSAELQSLKDHIQTIKPMWKKTWEEELQNIV 874
                 67889999********************977666666555 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.9   0.00047      0.61      23     107 ..     791     876 ..     773     920 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00047
    ISG65-75  23 ekadkkLnkeaakaLCalkkladkvreetadyllketkdklayienakekvdyyvekleslleeake.kgtltesdaeklkkacee 107
                   ++ kL+  +  +L ++++l d+v+++++d l++++  k   +++ k  ++  + +l+sl++  ++ k   +++ +e+l++++ee
  CDO68150.1 791 DTGKAKLDTRSQTVLTQMEELQDTVEGIKDDVLKRNVSPKSLLLKKVKGDIETVSAELQSLKDHIQTiKPMWKKTWEEELQNIVEE 876
                 46889***********************************9999999999999999999999998885555555555666666655 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4      0.39   4.9e+02      13      40 ..     603     630 ..     592     635 .. 0.72
   2 ?   -2.3   0.1         5   6.4e+03       9      27 ..     758     776 ..     756     778 .. 0.79
   3 ?   10.2   0.4   0.00058      0.75      11      38 ..     796     823 ..     794     833 .. 0.89
   4 ?    6.0   0.1     0.013        16       9      34 ..     834     859 ..     830     864 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.39
   FlaC_arch  13 steletvkkeneelsksveelkenVkdl 40 
                 s ++e + +  +++  ++  l++++kdl
  CDO68150.1 603 SLNIEPLDQIKQHIDAQISSLQQDIKDL 630
                 5566666666778888888888888876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
   FlaC_arch   9 lsklsteletvkkeneels 27 
                 +++++ +l+t++++ + ++
  CDO68150.1 758 MKQTKESLGTLRQQTQTVK 776
                 5667778999999999886 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00058
   FlaC_arch  11 klsteletvkkeneelsksveelkenVk 38 
                 kl+t+ +tv +++eel+++ve +k++V 
  CDO68150.1 796 KLDTRSQTVLTQMEELQDTVEGIKDDVL 823
                 789999********************93 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.013
   FlaC_arch   9 lsklsteletvkkeneelsksveelk 34 
                 l+k++  +etv +e+++l++ ++++k
  CDO68150.1 834 LKKVKGDIETVSAELQSLKDHIQTIK 859
                 56788899999999999999999997 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.18   2.3e+02      75     102 ..     606     633 ..     585     649 .. 0.58
   2 ?   -0.3   0.2      0.78     1e+03      53     100 ..     729     776 ..     711     781 .. 0.59
   3 ?    8.7   5.2    0.0013       1.6      42     121 ..     774     859 ..     753     877 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
     DUF1664  75 ldeqkeiskeikeevtevredlseiged 102
                 ++   +i+++i+++++++++d++++++ 
  CDO68150.1 606 IEPLDQIKQHIDAQISSLQQDIKDLRTA 633
                 3333444444444444444444444443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.78
     DUF1664  53 vseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseig 100
                 v ++l+++ ++ ++    ++   +  +e  k++ke + ++r+++++++
  CDO68150.1 729 VVSDLKTQFDEVQNLRRDLGIMRQLYTEFMKQTKESLGTLRQQTQTVK 776
                 444444444444444444444445556677777777777777777665 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0013
     DUF1664  42 avesv.skqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevred.....lseigedvesvkeaveglesklerie 121
                  v+++ ++++    + + + k +L  r ++v ++++e +++ + ik++v + +       l++++ d+e+v++  ++l+ ++++i+
  CDO68150.1 774 TVKQLaTQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQDTVEGIKDDVLKRNVSpksllLKKVKGDIETVSAELQSLKDHIQTIK 859
                 2333214456666799999**************************99997644322233478999999999999999999998885 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.6   3.3e+03      11      37 ..     123     149 ..     115     164 .. 0.71
   2 ?   -2.7   0.0       4.1   5.3e+03      11      27 ..     618     634 ..     608     654 .. 0.57
   3 ?    8.5   0.3    0.0014       1.8      10      64 ..     762     816 ..     752     827 .. 0.88
   4 ?   -1.0   0.0       1.2   1.5e+03      25      61 ..     842     882 ..     821     890 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.6
        ApoO  11 eptdrLeegvrslRkslepytsavqde 37 
                 + +++Le++  ++R+ +++ ++ + ++
  CDO68150.1 123 ATPENLERYLPKVRQIITRLLQGLRAK 149
                 456789999999999888777666555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.1
        ApoO  11 eptdrLeegvrslRksl 27 
                 ++ ++L++ ++ lR ++
  CDO68150.1 618 AQISSLQQDIKDLRTAV 634
                 23344444444444444 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0014
        ApoO  10 eeptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkeppe 64 
                 +e  ++L ++ +++ + +++++  + +++++ k k++t  q+v +++++L++  e
  CDO68150.1 762 KESLGTLRQQTQTVKQLATQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQDTVE 816
                 567899********************************************99764 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.2
        ApoO  25 kslepytsavqdelnkvkskvetae....qsvtdtiasLke 61 
                 ++++ +++ ++d+++++k+ +++++    q++ ++ ++L++
  CDO68150.1 842 ETVSAELQSLKDHIQTIKPMWKKTWeeelQNIVEEQQFLQH 882
                 56677777777777777776665541111444455555555 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3     0.025        32      23      66 ..     593     637 ..     584     640 .. 0.77
   2 ?    8.7   0.1    0.0011       1.5       8      50 ..     742     784 ..     739     797 .. 0.88
   3 ?   -0.4   0.2      0.72   9.3e+02      88     109 ..     838     859 ..     794     878 .. 0.67
   4 ?   -2.4   0.2         3   3.9e+03      28      55 ..     932     959 ..     922     962 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.025
        CdvA  23 ikekleealkklk.ekakelkeklkkrlkeledqikslekalanl 66 
                 + e  e+ l  l+ e  +++k+ +++++++l++ ik l +a++++
  CDO68150.1 593 VDEVKEKVLLSLNiEPLDQIKQHIDAQISSLQQDIKDLRTAVVSN 637
                 4555556666665255899*******************9998875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
        CdvA   8 eLvsegdipkstyeeikekleealkklkekakelkeklkkrlk 50 
                 +L ++  i+++ y e+ ++ +e+l +l+++ +++k+  +++++
  CDO68150.1 742 NLRRDLGIMRQLYTEFMKQTKESLGTLRQQTQTVKQLATQKVG 784
                 6778888****************************98777765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.72
        CdvA  88 rellesaleekeeikkllekls 109
                 ++ +e +++e++++k ++++++
  CDO68150.1 838 KGDIETVSAELQSLKDHIQTIK 859
                 3344444444444444444443 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3
        CdvA  28 eealkklkekakelkeklkkrlkeledq 55 
                 e+ lk++ +++k+  ++l +r++e +++
  CDO68150.1 932 ERRLKAIAANEKNREKELASRTDEFQSE 959
                 5677777888888888888887776655 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.8   1.1e+04      58      78 ..     123     145 ..     101     179 .. 0.53
   2 ?   -1.6   0.0       3.3   4.2e+03      83     108 ..     609     634 ..     599     639 .. 0.75
   3 ?    4.7   0.4     0.038        48      69     110 ..     751     792 ..     726     820 .. 0.59
   4 ?    7.9   0.1    0.0037       4.7      59     109 ..     844     899 ..     833     903 .. 0.77
   5 ?   -2.9   0.1       8.4   1.1e+04      96     112 ..     941     957 ..     913     963 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.8
      KfrA_N  58 elPealaeal..laalwqaalee 78 
                 + Pe l++ l  ++++ +++l+ 
  CDO68150.1 123 ATPENLERYLpkVRQIITRLLQG 145
                 45666666666666666666552 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
      KfrA_N  83 laaaraelqaaraaleaeraeaearv 108
                 l++ +++++a++  l++  ++++ +v
  CDO68150.1 609 LDQIKQHIDAQISSLQQDIKDLRTAV 634
                 67778888888888888888876654 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
      KfrA_N  69 aalwqaaleeaeeelaaaraelqaaraaleaeraeaearvee 110
                 ++l+++  ++ +e+l ++r++ q   + + +++  a+a +++
  CDO68150.1 751 RQLYTEFMKQTKESLGTLRQQTQTVKQLATQKVGGARAYIDT 792
                 555555555555555555555555555555555444443332 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0037
      KfrA_N  59 lPealaeal.....laalwqaaleeaeeelaaaraelqaaraaleaeraeaearve 109
                 ++++l+ +      ++ +w++ +ee  + + ++++ lq++++ le   ++ +a ve
  CDO68150.1 844 VSAELQSLKdhiqtIKPMWKKTWEEELQNIVEEQQFLQHQEEFLEDLFEDHKAVVE 899
                 5555554444446679*************************999988777776665 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 8.4
      KfrA_N  96 aleaeraeaearveele 112
                   +++ +e+++r++e +
  CDO68150.1 941 NEKNREKELASRTDEFQ 957
                 22222222333333333 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.5    0.0017       2.2      20      56 ..     600     636 ..     587     641 .. 0.79
   2 ?    1.8   0.2      0.22   2.8e+02      35      94 ..     757     816 ..     731     822 .. 0.77
   3 ?    2.4   2.0      0.14   1.8e+02      10      73 ..     806     875 ..     797     889 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
     DUF5082  20 aaleekIerLkeaktklsdekeslkqkkkklekplns 56 
                   l+  Ie L + k++++++ +sl+q++k+l++  +s
  CDO68150.1 600 VLLSLNIEPLDQIKQHIDAQISSLQQDIKDLRTAVVS 636
                 5566778899999999999999999999998887666 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.22
     DUF5082  35 klsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyqtyvdkldelidaie 94 
                 +++++kesl + +++ ++         G +++  d+  ++l++  qt+ ++++el+d +e
  CDO68150.1 757 FMKQTKESLGTLRQQTQTVKQLATQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQDTVE 816
                 566677777777777777776666666777777777777888888888888888888765 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.14
     DUF5082  10 aqiaelrseiaaleekIer.........LkeaktklsdekeslkqkkkklekplnssesWkGkeennydgirs 73 
                  q++el+ +++++ +++ +         Lk++k  +++++++l++ k  ++++     +Wk++ e++ ++i++
  CDO68150.1 806 TQMEELQDTVEGIKDDVLKrnvspksllLKKVKGDIETVSAELQSLKDHIQTIKP---MWKKTWEEELQNIVE 875
                 5555555555555555533233333333779999999999999999999999864...555554444444433 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       1.2   1.5e+03     106     148 ..     599     641 ..     579     646 .. 0.73
   2 ?    8.6   2.4    0.0013       1.7      89     153 ..     835     896 ..     790     905 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
  EMP24_GP25L 106 dsakkekletleselkkleekldsikreqkylrereerlrdtn 148
                  ++  +  +e+l +  ++++ +++s+++++k lr+   ++r+t+
   CDO68150.1 599 KVLLSLNIEPLDQIKQHIDAQISSLQQDIKDLRTAVVSNRRTS 641
                  4455667888888888899999999999999998888888776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
  EMP24_GP25L  89 kkvsfdievgseasdykdsakkekletleselkk.leekldsikreqkylrereerlrdtnestns 153
                  kkv+ die+  +a+       k++++t++   kk  ee l++i +eq++l+ +ee l d+ e+   
   CDO68150.1 835 KKVKGDIETV-SAEL---QSLKDHIQTIKPMWKKtWEEELQNIVEEQQFLQHQEEFLEDLFEDHKA 896
                  5555666662.2222...445777788777776658***********************9998665 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3       1.5   1.9e+03     137     181 ..     586     634 ..     580     638 .. 0.58
   2 ?    8.9   3.7    0.0012       1.5      96     190 ..     762     857 ..     713     865 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
        End3 137 vkreleqLLkYKeeqlreleeg...egkske.knlksvkedietveeqV 181
                 v++ele   + Ke+ l +l+ +   + k++  ++++s+++di+ +++ V
  CDO68150.1 586 VQYELEDVDEVKEKVLLSLNIEpldQIKQHIdAQISSLQQDIKDLRTAV 634
                 5666666666666666555432110222222367888888888887766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
        End3  96 dweevrLkreLaeLeeklekveeeaekr.kekereessksalvkreleqLLkYKeeqlreleegegkskeknlksvkedietveeqVegLesylss 190
                 +    +L+++ + ++++ ++    a+   ++++ + +++s++v  ++e+L +  e    ++ + + + k+  lk+vk dietv    ++L++++++
  CDO68150.1 762 KESLGTLRQQTQTVKQLATQKVGGARAYiDTGKAKLDTRSQTVLTQMEELQDTVEGIKDDVLKRNVSPKSLLLKKVKGDIETVSAELQSLKDHIQT 857
                 3334556666666666655555444444458999999***************99888888888888888899*********************986 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.2   1.5e+03      46      64 ..     616     634 ..     599     646 .. 0.70
   2 ?    6.8   2.6     0.004       5.2      51     118 ..     741     812 ..     733     890 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
    Lectin_N  46 igsqnsqLqreLetLketf 64 
                 i +q s Lq++++ L++++
  CDO68150.1 616 IDAQISSLQQDIKDLRTAV 634
                 4556677777777777653 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.004
    Lectin_N  51 sqLqreLetLketfsnfssstlaeiqalssqggsls....ekvtsleaklekkqqdlkadhselllhvkqlv 118
                 ++L+r+L  +++ +++f ++t+  + +l+ q++ ++    +kv   +a ++  +++l++ + ++l ++ +l+
  CDO68150.1 741 QNLRRDLGIMRQLYTEFMKQTKESLGTLRQQTQTVKqlatQKVGGARAYIDTGKAKLDTRSQTVLTQMEELQ 812
                 68***************************9766654111145666666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1658  (0.0924759); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.56
# Mc/sec: 5629.66
//
Query:       CDO68151.1  [L=285]
Description: hypothetical protein BN946_scf184938.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   11.4   0.1       0.15   10.9   0.1    1.1  1  NAGLU     Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel do


Domain annotation for each model (and alignments):
>> NAGLU  Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   8.6e-06      0.15     197     232 ..      93     129 ..      68     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.6e-06
                 HHHHHHHHHHHH-TT-EEEEEEBTT..........BS CS
       NAGLU 197 vskaiykalkaadpkavWvlqgWlfvsdkkfW.tker 232
                 ++++ +k++k+a++k  W+ q+W+ + d++ + ++e+
  CDO68151.1  93 LGSNWLKEMKSAEEKQAWLAQQWQEHVDSEEFgSAEA 129
                 6778899*****************9776654403333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1966.98
//
Query:       CDO68152.1  [L=293]
Description: hypothetical protein BN946_scf184938.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.025   14.1   3.2      0.032   13.8   3.2    1.2  1  Ustilago_mating  Ustilago B locus mating-type protein
        2.3    5.2   3.8        2.7    5.0   3.8    1.0  1  GREB1            Gene regulated by oestrogen in breast cancer
        4.9    5.7   5.8        6.3    5.4   5.8    1.1  1  MAP65_ASE1       Microtubule associated protein (MAP65/ASE1 f


Domain annotation for each model (and alignments):
>> Ustilago_mating  Ustilago B locus mating-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.2   5.3e-06     0.032     104     167 ..       2      74 ..       1     131 [. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-06
  Ustilago_mating 104 ttvakrsparktktkaktkskkakqrasktpsidst.......sklestpelsacs..tadnsfssfgsslsl 167
                       t+akr+pa++  +  k ks ++ q+ +k+  +          s    tp lsa s  t+ +s+ss  ss sl
       CDO68152.1   2 KTAAKREPAQRKLPYEKQKSARTSQKQTKSRNVGRKhptdacqSPTSPTPSLSATSssTSSSSLSSAPSSSSL 74 
                      599******998888887777666666555544332223333588889*****97522677788888888887 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.8   0.00045       2.7    1190    1276 ..      15     104 ..       1     114 [. 0.55

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00045
       GREB1 1190 svtseeeeseeskekekeslsketesqlsleaseqkealdakasskssssssssssass.Pssscsl..akavkrPpivllskavydilt 1276
                  +  +++++ +++k+ +++++++++ +++ +++++ + +l+a++ss+ssss ss++s+ss P ++++    + +++    + ++  ydi+t
  CDO68152.1   15 PYEKQKSARTSQKQTKSRNVGRKHPTDACQSPTSPTPSLSATSSSTSSSSLSSAPSSSSlPLETARDlfLEFLHKTYPNITPRHEYDIVT 104 
                  222333333333334445566677777766667777777777777777776666666665755554311344455555566777777776 PP

>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.8    0.0011       6.3     422     485 ..      16      73 ..       3     107 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHCXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX CS
  MAP65_ASE1 422 rerqksarklkkasqteeeilkgskmrtpskrrvtapkTPsklksmskvsssssslkktpsnsk 485
                  e+qksar  +k++++      g+k  +  + +++  +TPs + ++s++ssss+s    ps+s 
  CDO68152.1  16 YEKQKSARTSQKQTKSR---NVGRK-HPTDACQSPTSPTPSLSATSSSTSSSSLS--SAPSSSS 73 
                 36677777555555444...33444.55666677778****87777777777777..3333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2144.37
//
Query:       CDO68153.1  [L=780]
Description: hypothetical protein BN946_scf184938.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-10   39.4  19.3    9.5e-07   28.9   5.2    5.0  4  He_PIG         Putative Ig domain
  ------ inclusion threshold ------
      0.081   11.7   0.0        5.3    5.7   0.0    2.7  3  Sarcoglycan_2  Sarcoglycan alpha/epsilon
      0.081   12.9   0.3       0.17   11.9   0.3    1.5  1  Rib            Rib/alpha-like repeat


Domain annotation for each model (and alignments):
>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   5.2   1.6e-10   9.5e-07       1      49 []      60     102 ..      45     102 .. 0.92
   2 ?    3.8   0.0     0.011        68       1      28 [.     180     207 ..     172     217 .. 0.87
   3 !    8.0   0.6   0.00052       3.1      14      45 ..     303     334 ..     301     338 .. 0.91
   4 !    5.3   0.1    0.0039        23      16      44 ..     404     432 ..     402     435 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.6e-10
      He_PIG   1 tytlttpgsngLPsGLtLdsstGtitGtpdqtvapGsytftVtatdgsg 49 
                 ty++      +LP +L++ds t t+ Gtpd   + Gs t+tVt++d +g
  CDO68153.1  60 TYAA-----SSLPDWLSFDSDTLTLHGTPDVQDE-GSPTITVTVSDPGG 102
                 6777.....6**********************66.**********9876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.011
      He_PIG   1 tytlttpgsngLPsGLtLdsstGtitGt 28 
                 +y++t  ++ +LP ++ +++   t+ G+
  CDO68153.1 180 YYAATQADGSPLPDWIRFNAKAMTFGGV 207
                 5888999************998888776 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00052
      He_PIG  14 sGLtLdsstGtitGtpdqtvapGsytftVtat 45 
                 s+L  ++s  t++G+p +  + G++ +t+t +
  CDO68153.1 303 SWLRYNASAKTLSGQPPSDFTSGTLPVTLTSS 334
                 79999************999*********965 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0039
      He_PIG  16 LtLdsstGtitGtpdqtvapGsytftVta 44 
                 L +dss+G ++G +   v     t+t ta
  CDO68153.1 404 LRFDSSSGKLSGPIPAQVSYSHITITFTA 432
                 889**********5555555444444444 PP

>> Sarcoglycan_2  Sarcoglycan alpha/epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.11   6.3e+02      49     117 ..     176     243 ..     161     251 .. 0.66
   2 ?    5.7   0.0   0.00089       5.3      62     115 ..     299     348 ..     292     360 .. 0.86
   3 ?    2.1   0.0     0.011        66      75     119 ..     407     451 ..     386     460 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.11
  Sarcoglycan_2  49 seqfkyrsslenyPDlPsWlrYiyskeyhaGfLYGtppaeeagkelsieivalnrktyetrrlvlelvv 117
                     + + y ++  +   lP W+r+  +  +  G+    p + +  k +s+ + a +++ y  + +   lvv
     CDO68153.1 176 PNSLYYAATQADGSPLPDWIRFNAKAMTFGGV-SPRPEELTGPKIVSLVLHASDQEGYSAASVPFDLVV 243
                    5666677776666679******9888777775.344444455566666666777777766666666555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00089
  Sarcoglycan_2  62 PDlPsWlrYiyskeyhaGfLYGtppaeeagkelsieivalnrktyetrrlvlel 115
                     Dl sWlrY  s ++    L G pp++ +  +l++ ++    +t et  ++ ++
     CDO68153.1 299 SDLESWLRYNASAKT----LSGQPPSDFTSGTLPVTLTSSVNQTLETSVTIAAV 348
                    69*******999886....7789************************9887665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.011
  Sarcoglycan_2  75 eyhaGfLYGtppaeeagkelsieivalnrktyetrrlvlelvvae 119
                    + ++G L G  pa+    +++i  +a+ r t+ t ++ l l  + 
     CDO68153.1 407 DSSSGKLSGPIPAQVSYSHITITFTAYSRITHSTSHTSLPLSLSS 451
                    5689******************************99888776654 PP

>> Rib  Rib/alpha-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   2.8e-05      0.17      21      55 ..      66     105 ..      52     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.8e-05
         Rib  21 lPdGTky.....tWketpdttksGekeavvvVtYPDGskd 55 
                 lPd   +     t + tpd+  +G  +++v V+ P Gs +
  CDO68153.1  66 LPDWLSFdsdtlTLHGTPDVQDEGSPTITVTVSDPGGSDS 105
                 5555555444447778*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5896.41
//
Query:       CDO68154.1  [L=1120]
Description: hypothetical protein BN946_scf184938.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-35  120.4   0.0    1.1e-34  119.6   0.0    1.4  1  DDE_1        DDE superfamily endonuclease
    1.1e-10   41.1  25.7    7.3e-09   35.0  21.9    2.3  2  MFS_1        Major Facilitator Superfamily
    1.1e-10   41.4   0.0    2.7e-10   40.1   0.0    1.6  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.055   13.3   0.0    1.8  2  DUF4817      Helix-turn-helix domain (DUF4817)


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   2.4e-38   1.1e-34       2     175 .]     344     513 ..     343     513 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 2.4e-38
       DDE_1   2 erltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWLkvfdkrleaekrkilLlldssrshetvelleselqni 100
                  +lt +  +na+gs kL+p+vigk+k+pr f +  kt  +l+++y+ n k w+t+ + + W+k++d++l+a++rkilLl d++ +h   e     l+ i
  CDO68154.1 344 TQLTYAFTCNADGSDKLPPMVIGKYKKPRPFGG--KTGAELGFDYHHNAKVWMTAVLYQSWIKHWDTKLVAQHRKILLLQDNFSGHIVPEG----LRAI 436
                 679999*************************99..***************************************************98887....8888 PP

       DDE_1 101 klvflPassasllqPldqgvvselKarYrrqllqalleeqnrlsk..eqkkltlldalkfikkAwnavsketiksaf 175
                 ++  + ++ +  +q  dqg++  +Ka+Yr+++++ +++  ++  +  +  ++ +l a+++  +Aw av + ti++++
  CDO68154.1 437 HVENFEPNLTPHVQTDDQGIIRCFKAHYRAKYIERAIDRYDSGISpaQIYEIDILTAMRIADAAWRAVDVTTIRHCW 513
                 8888889********************************999988344457789**********************9 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.3   7.7e-05      0.34     198     300 ..     710     815 ..     677     819 .. 0.77
   2 !   35.0  21.9   1.6e-12   7.3e-09      65     282 ..     811    1115 ..     803    1119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.7e-05
       MFS_1 198 p..awkallkdpvlwillialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalg 290
                 +  a ++++  +  w+l++++ l++ ++s+    ++ +l + + +++g  +  l++ l  + ++++a++++++++++d ++r ++ l+  ++l l++  
  CDO68154.1 710 TveAAEQVFGTRSRWFLFLGIGLASYVYSLdnqtTSNYLAF-ATSHFGAHS--LISSLQVAQSILVACGKPIIAKVADVTSRGTAYLVVRASLPLSLSP 805
                 23367788999999999999999999999998866666666.699999994..4444488888888999********************9999999999 PP

       MFS_1 291 lallavtssa 300
                  +l++v+ s 
  CDO68154.1 806 RLLIPVSLSV 815
                 9999998433 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 1.6e-12
       MFS_1   65 lllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaiv 160 
                  + l++++++lg ++++l a+++ +++++ +l ++g+ +l  +  ++iad+++ + rg + g+ s+ f l a +g +++ +++++l+Wr+ +  +ai+
  CDO68154.1  811 VSLSVVFYVLGyGTIAL-APNVAAVAAGIILYAIGYTGLQLLTSVIIADITTLQWRGIVSGFTSLPFLLNAFVGSIVSNFFLQHLNWRWGYATFAIL 906 
                  56899******777777.69999************************************************************************99 PP

       MFS_1  161 sllafv.lfllllpeepperkrkspkeee.................................................................... 188 
                    +a+  l++ l++ e+++++     +                                                                      
  CDO68154.1  907 VPVALSpLIITLFWGERKAKHLGLLHPSPpradlnlapcprmalaeqldllglhpprrrrrlhlapltlaqtvhpqleqpyvsslppprpiphpvla 1003
                  99995565556665555555544444444458888888889999999999999999999999999999*9************999998888888888 PP

       MFS_1  189 .............kgtgpaplvp...............awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvg 257 
                                        p               a + l ++ v+ +++i+++ f + +++++t+l +++  +  +s  ++++++++ ++ +g
  CDO68154.1 1004 asmiaslvlgsslL--------PlfalwdiryatrpviARRFLSNRTVVCAAWIGFFDF-LSYFLTYTYLSSFVLVTKPWS--MTSVFYFGQVQTLG 1089
                  88888555555540........3444444444333342244444444333555555555.58888****************..88888888888887 PP

       MFS_1  258 ail.allagrlsdrlgrrrrlllall 282 
                  + + ++lag l++ l r + +l+++l
  CDO68154.1 1090 LTFfGILAGVLMRFLHRYKWILFTGL 1115
                  77769999999988887776666655 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     6e-14   2.7e-10       2      64 ..     215     277 ..     214     279 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 6e-14
                  HHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS--X CS
  HTH_Tnp_Tc5   2 pelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhglkr 64 
                  p++ + +  W+ q+re g+ +tg+++r+k+  +a +a  ++e+  ++S+gWl+ Fk Rhgl +
   CDO68154.1 215 PQISEMMNCWVIQAREAGVLLTGSVLRAKWTSFADRAGIPKEDRLSLSEGWLEAFKARHGLRG 277
                  788899999*************************999**********************9975 PP

>> DUF4817  Helix-turn-helix domain (DUF4817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.055       1      32 [.     141     172 ..     141     186 .. 0.90
   2 ?   -3.8   0.0       2.7   1.2e+04      22      33 ..     206     217 ..     204     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
     DUF4817   1 TleqRifiVkaYykngesvtatqrafrrrFpn 32 
                 Tl qRi+i+ +++ ng+  t t ++f + +p+
  CDO68154.1 141 TLRQRIEILDWHHANGKKQTRTAQHFDKIYPH 172
                 899****************************5 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
     DUF4817  22 tqrafrrrFpnr 33 
                 + ra+ +++p +
  CDO68154.1 206 AKRAYQTEHPQI 217
                 679******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 7010.81
//
Query:       CDO68155.1  [L=773]
Description: hypothetical protein BN946_scf184938.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-146  489.2  40.4   2.2e-146  489.1  40.4    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.1  40.4  1.2e-150  2.2e-146       2     616 .]      86     744 ..      85     744 .. 0.96

  Alignments for each domain:
  == domain 1  score: 489.1 bits;  conditional E-value: 1.2e-150
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk..............lslnpgpftikEnvliqtmasaaatlalatg 86 
                 +T+R ++lG++l+ + +++  +f +r+++v++s +++++ a++lg+ l++ilp               ++lnpgpf+ikE+v+i +m+ +a+  a+a +
  CDO68155.1  86 YTFRTWFLGLGLSCFAAVLGELFFFRPQTVQVSGLFLQVFAYILGRGLEVILPGprnpkfttsdhwfwRFLNPGPFNIKEHVAISIMSTTASDQAIAIS 184
                 7***************************************************8888999**************************************** PP

         OPT  87 livvipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee..ksrlkfflivflgsfvwglfplylfpa 183
                 ++++++++  y+ ++++g +i+ ++++ql+G+g++g+ R +lvyp+  ++P  +++++l+ a+h ++g     +r  ff+ v+++ fvw++fp+y+ p+
  CDO68155.1 185 VFAAQELY--YHVNINAGIAIFTLIASQLIGYGLTGIARDYLVYPTWALYPFLMPQVQLFDAMHRGKGIFtqRKRRVFFWSVLVAIFVWEWFPEYIAPT 281
                 ********..*********************************************************97787888889999****************** PP

         OPT 184 lssfswltwiapknvvlanlf.......glgllpltfdwnviaayiGsg...livplwvavnmliGavlswgiliPll.yysngwypaylp........ 263
                 l+++s+++ +  k++ ++++f       glgl++l++dwn++ +  Gs    l +pl+++++  +G++++  il+  l y  n+w ++++p        
  CDO68155.1 282 LTGISIICLADRKSAWVTRIFggaagneGLGLFALCLDWNYVGS-GGSAigsLFTPLSTQLSLYAGVIVC--ILSFCLcYANNVWKAQNFPflsqllfy 377
                 *****************************************986.344312279**************99..6666667******************** PP

         OPT 264 .....ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwylallv 357
                      yd+  il+ d++l+ +  ++ gl+++aa+ +l  ++  + i ++++h +++h++d+++ ++    +++e dd+h++ m+ yk+vp ww+ ++++
  CDO68155.1 378 engteYDQLAILNPDFTLNNTLLEQQGLPYYAASQTLFQVSRTMYIGAAVTHFFIWHARDVWNIVRRL--RTEECDDVHYQKMKVYKEVPLWWFGVIFL 474
                 *************************************9999999999*********************..999************************** PP

         OPT 358 lslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllka 456
                 +++++g+ +++a + +lp+wg+++al++  +++ + + +++++g+  + +++ l q++ ga++pgrpvan++f+ ++y++ +   ++++DLK+G+++k+
  CDO68155.1 475 ITFALGLGLCYAAKSGLPWWGFIVALIFTTAFVPILGTLYATVGY--QPSLQFLIQMVGGAMMPGRPVANMYFTLYGYQTYQLTLNLLRDLKLGQYTKL 571
                 *********************************************..**************************************************** PP

         OPT 457 sPraqfvaqliGtlvgavvniavlkllvkaygdict.adasnaftaPqakvfaavavl.lvggk.........kglpwafllgavapfilllllkkfpk 544
                 +Pra+fv+q iG ++g ++n++v++ +++  ++i+  ++++n ++++q++++++ a++ +  +k           +pw++++g+++p++++l+++++p 
  CDO68155.1 572 PPRATFVMQTIGGIIGGILNYVVMQSVIDGNREILLaVQGTNTWSGQQVQSYNSNAITwGALSKplyspgaryGFIPWMLIAGLGVPIPFWLAHRRWP- 669
                 ****************************877777777********************997777789******999***********************. PP

         OPT 545 kstarklplplafavgfylppsl..si.alligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 k+ ++++ +p+++a ++yl++ +  s+ + l ++++++++l+++++ w++kyn++l+a+L+ G+++m ++ +f+v
  CDO68155.1 670 KAGFNHVFTPVVVAELGYLSVGInsSWmTSLAVAIFSQWYLRKYRPRWFRKYNFLLSAALDGGTQIMVFVYSFAV 744
                 77778888999999888877777668889999****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5023.23
//
Query:       CDO68156.1  [L=110]
Description: hypothetical protein BN946_scf184938.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-40  136.6   1.4      3e-40  136.4   1.4    1.0  1  Dynein_light  Dynein light chain type 1
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.15   12.1   0.0    1.1  1  DUF4320       Domain of unknown function (DUF4320)


Domain annotation for each model (and alignments):
>> Dynein_light  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   1.4   3.4e-44     3e-40       1      86 []      27     110 .]      27     110 .] 0.98

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 3.4e-44
                   --EEEEEEE-HHHHHHHHHHHHHHHHH-SSHH..HHHHHHHHHHHHHH-S-EEEEEEEEEEEEEEEETTEEEEEEETTEEEEEEE- CS
  Dynein_light   1 kavikeadmseemqeeaielakealekfkkekekdiaayikkeldkkygptWhciVgksfgssvthekghfiyfyigklaillfKt 86 
                   ka ik+ dms++mq+ea+++a+ alek++ ek  diaa+ikke+dk++gptWh++Vgk+fgs+vthe++hfiyfyig lail++K+
    CDO68156.1  27 KAIIKNVDMSDDMQQEAVDVAHAALEKYNIEK--DIAAQIKKEFDKRHGPTWHVVVGKNFGSYVTHETKHFIYFYIGTLAILIWKS 110
                   678***************************99..***************************************************7 PP

>> DUF4320  Domain of unknown function (DUF4320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05      0.15      30     106 ..      28     108 ..      24     110 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
     DUF4320  30 elvreaelsGgvgseteeraaelkeqtglepdisw.skeqtdek...tgkiqlndevtvtitteakiglfkgfgsdpitlk 106
                  +++ + +s  +++e+ ++a+  +e++++e di    k+++d++   t  + +++++   +t e+k ++   +g   i ++
  CDO68156.1  28 AIIKNVDMSDDMQQEAVDVAHAALEKYNIEKDIAAqIKKEFDKRhgpTWHVVVGKNFGSYVTHETKHFIYFYIGTLAILIW 108
                 6899****************************9994444555557888899999999999999999877777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 779.26
//
Query:       CDO68157.1  [L=295]
Description: hypothetical protein BN946_scf184938.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1963.44
//
Query:       CDO68158.1  [L=429]
Description: hypothetical protein BN946_scf184938.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 3051.98
//
Query:       CDO68159.1  [L=349]
Description: hypothetical protein BN946_scf184938.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        9.8    4.6   6.4         13    4.2   6.4    1.1  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.4   0.00071        13     313     370 ..     196     253 ..     176     323 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.00071
    Macoilin 313 eesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqkl 370
                 ++ ++s+ssssss++++ns+ a++ +++ + +s++   +s+   ts+++++ s   ++
  CDO68159.1 196 SSGSSSSSSSSSSDDASNSSGAASATTSVAAASTEAAATSTAAATSTTTAATSSGSSM 253
                 2222233333333333333333333332233333322222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1300  (0.0725082); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 2423.23
//
Query:       CDO68160.1  [L=143]
Description: hypothetical protein BN946_scf184938.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-16   59.0   0.0    6.4e-16   58.4   0.0    1.2  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   3.6e-20   6.4e-16       1      47 [.      57     103 ..      57     114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 3.6e-20
                    HHHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB- CS
  DHBP_synthase   1 eeaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhas 47 
                    e+aie++++G f++v+Dde+renegdLiiaA++v+++k+a+mi+h++
     CDO68160.1  57 EDAIESFARGDFLVVMDDESRENEGDLIIAASAVSTHKMAWMIKHTR 103
                    68*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 984.88
//
Query:       CDO68161.1  [L=314]
Description: hypothetical protein BN946_scf184938.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-32  109.5   5.4    2.8e-17   62.4   0.0    3.4  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.6e-21   2.8e-17       5      95 ..      25     110 ..      21     112 .. 0.96
   2 !   28.7   0.0   5.2e-11   9.3e-07       9      95 ..     126     210 ..     120     212 .. 0.91
   3 !   18.9   1.0     6e-08    0.0011       5      93 ..     226     306 ..     222     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.6e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++k +l G+la+ +++  +tPldv K+ +q+++ ++k      +l  l++i+ eeG  gl++G++p++++++ + + k +lye +k+l+++
  CDO68161.1  25 YAKCMLGGALACGFTHAGITPLDVTKCNMQVNPAKYKG-----LLPGLRTIIAEEGSNGLWKGFGPTFVGYSLQGMFKYGLYEPFKDLYMN 110
                 6789999****************************999.....*********************************************986 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 5.2e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHH.HHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiyk.eeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 l+a++ a  +a ++ +Pl++ K+++qt++  +       ++d+l+++ k +   r  +  l+p + r++p++++kf+++e++ +l+++
  CDO68161.1 126 LAASASAEFFADVALCPLEMTKVKIQTSQPGTFPVP---MFDALREMSKlKAETRYPFGSLVPLWSRQIPYTMAKFFFFEYIVTLFYR 210
                 679999*********************999877654...**********56667999****************************987 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 6e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGG.GTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrgl.yrGllpnllrvapasalkfvlyetlkrll 93 
                 +  ++++G lag+v +lv +P d +   +   ++++k          l++i  e Gl +l  +Gl+ +++++   ++ ++++y+t+k+ +
  CDO68161.1 226 LGVTFASGYLAGVVCALVSHPADSLVSLMGKPANRGK---------SLGQIASETGLVALaTKGLGTRVIMIGTLTGFQWWIYDTFKTAM 306
                 56789*******************9888766666655.........499********997359************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2372.73
//
Query:       CDO68162.1  [L=547]
Description: hypothetical protein BN946_scf184938.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-84  284.3   0.0    7.8e-83  279.1   0.0    2.0  1  COesterase     Carboxylesterase family
    0.00072   19.1   0.7     0.0012   18.4   0.7    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0051   16.7   2.0     0.0087   15.9   0.1    2.2  3  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.071   12.2   0.0       0.11   11.6   0.0    1.2  1  DUF1749        Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.1   0.0   1.7e-86   7.8e-83       4     497 ..      25     520 ..      12     537 .. 0.85

  Alignments for each domain:
  == domain 1  score: 279.1 bits;  conditional E-value: 1.7e-86
                 EEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHH.................BES CS
  COesterase   4 vvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleaw.................vsE 85 
                 +v++   +v G +       + d +lGiP+A+pPvg+lR + P+p  ++tg+++At+++++C+q++   ++  ++l+ +                 ++E
  CDO68162.1  25 SVTLDHATVMGSTDG-----TTDHYLGIPFAQPPVGKLRLRLPRPVPSYTGIVNATTYGNQCYQANLVAPTLPNDLDLPpeiaaflngslntpqppQNE 118
                 344444444444444.....8899******************************************999888887777799****************** PP

                 ---EEEEEEESSSSSTTSSEEEEEEE--STTTS-BGCGS-..THHHHHHH.....TSEEEEE----HHHHH-B-SS..TTSBS-HHHHHHHHHHHHHHH CS
  COesterase  86 DCLyLnvytPkekkeakkklPVlVwihGggfqtgsaseyd..gsaLaaeg.....nvivVtinYRlGvlGFlstgd..eeapGNvGllDqvlALrWVke 175
                 DCL +nv +P+ + + + klPV  wi+Gg++q+gs  +y   g  ++++       +i V++nYRlGv+GFl   +  e+  GN+Gl+Dq+ ALrW+++
  CDO68162.1 119 DCLNINVIVPAGT-KPSAKLPVAAWIYGGAYQVGSDASYTptGAGIVNRSvelgqPLIFVSMNYRLGVFGFLGGREvqEAGVGNLGLQDQREALRWIQK 216
                 **********996.788888****************99761156789988899999****************9955447889***************** PP

                 HGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGT..TSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGG. CS
  COesterase 176 nIasFGGdpervtlfGesAGaasvsllllsplsr..glfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqek. 271
                  I++FGGdp +vt++GesAG+ sv+++++++  +  glf+   +qSG a++ +   +k + +++ +a++vgc  +s+++++ clr+ +a++l +a  k 
  CDO68162.1 217 YISAFGGDPTKVTIWGESAGSQSVAYHMVTNGGNdeGLFRAGWMQSG-AVQAVGNITKLQTTFDFIASEVGC--ASASDVIGCLREVPADDLKAAGDKt 312
                 ******************************8777669**********.666666677799999*********..88889****************9998 PP

                 .SSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHS. CS
  COesterase 272 .aleasssklvsfaPvvdgdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeyt. 366
                   + + +  ++++ P  dg +l ++P++l+ + +  +vp +iG  +deg+lf    l+         ++++   +++  y+ ++ ++++ e ++ +y  
  CDO68162.1 313 pTVYTYQGINTPWFPRADGVYLIDDPMQLVLKGQaaAVPFVIGDCEDEGTLFSLASLNV-------TTDDEFLDWIKSSYFPTA-SDDAMEILMHYYPa 403
                 7666677889*******************999779*******************88877.......333444455555555554.77888888888877 PP

                 ........TTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHH CS
  COesterase 367 ........deadrddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsr 457
                          + ++      +k+++++ +d +f+a  + +++++ s++++++ +  +  +      k  g++h+++l+ v+g                  
  CDO68162.1 404 dpaagspfGTGNAYAFTPEYKRIAAFQGDFIFEAARRFFLNQL-SHKQKAWSFMSKRTQ-----VKGLGATHSTDLQNVYGGGD--------------- 481
                 7777765556666666777788899999*****9999999999.999999988776655.....6789*********9998764............... PP

                 HHHHHHHHHHHHSSTTSTTSS----B.TTTBEEEEESSSS CS
  COesterase 458 kmmtywtnFaktgnPnkeeeekWpkytkeeekylkinlkp 497
                  m +++ +F++t +Pn+  e +Wp+yt+e+ ++l +   +
  CDO68162.1 482 -MADFLIRFVNTLDPNGGPEIHWPAYTPESPQLLAFVDGE 520
                 .566799************************999886655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.7   2.6e-07    0.0012      29     106 ..     191     272 ..     174     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.6e-07
                   HCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHH..H..H-GGG-SEEEEESE---CCCHHC CS
  Peptidase_S9  29 GeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaal..n..qrpdlFkaavaevpvvdvlryds 106
                   G++ ++ag ++lg ++ +  + ++++ ++ +  d++++ i+G S+G + ++  +  n  +   lF+a++ + + v  +   +
    CDO68162.1 191 GREVQEAGVGNLGLQDQREALRWIQKYISAFGGDPTKVTIWGESAGSQSVAYHMvtNggNDEGLFRAGWMQSGAVQAVGNIT 272
                   89999*****************************************999876552234467789*******99998776655 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.31   1.4e+03       3      39 ..     142     183 ..     141     184 .. 0.74
   2 !   15.9   0.1   1.9e-06    0.0087      49      84 ..     204     239 ..     201     270 .. 0.87
   3 ?   -3.8   0.0       2.1   9.4e+03      45      56 ..     386     397 ..     384     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.31
                    EE--STTTS--TTTTHHHHHHHHHHH.....TSEEEEEE--- CS
  Abhydrolase_3   3 yfHGGGfvlgsldthdalcrelakel.....gavvvsvdYrl 39 
                    ++ GG++ +gs ++++++ + +++++       + vs++Yrl
     CDO68162.1 142 WIYGGAYQVGSDASYTPTGAGIVNRSvelgqPLIFVSMNYRL 183
                    567999999999999888777777653333357889999998 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.9e-06
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHH CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnl 84 
                    ++d  +alrw+++  +++g dp+++++ G+SaG + 
     CDO68162.1 204 LQDQREALRWIQKYISAFGGDPTKVTIWGESAGSQS 239
                    68999*********99*****************864 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.1
                    TTHHHHHHHHHH CS
  Abhydrolase_3  45 fPaavedalaal 56 
                    fP+a +da+++l
     CDO68162.1 386 FPTASDDAMEIL 397
                    99*****99987 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.11      74     141 ..     198     262 ..     195     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
     DUF1749  74 gwGtgsLkrDaeeieklveYlkktksGeekkekvvlmGHstGsqdvlyYltssnerdrekvdgailqa 141
                 g G  +L+  +e ++ + +Y+    +G  + +kv + G s Gsq v y +  +  +d+    ++ +q+
  CDO68162.1 198 GVGNLGLQDQREALRWIQKYISAF-GG--DPTKVTIWGESAGSQSVAYHMVTNGGNDEGLFRAGWMQS 262
                 556667777788888888999999.67..7789**************999988887877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3941.73
//
Query:       CDO68163.1  [L=158]
Description: hypothetical protein BN946_scf184938.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-23   83.6   0.0    1.7e-23   83.3   0.0    1.0  1  COesterase  Carboxylesterase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   9.6e-28   1.7e-23      10     130 ..      28     155 ..      17     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 9.6e-28
                 EEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHH...............BES---EEEEE CS
  COesterase  10 GkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleaw...............vsEDCLyLnvy 93 
                  +v G++        v++FlGiP+A+pPvg+lR + P+p ++++g+++At+f+++C+q++  +++  ++l+ +               +sEDCL +nv 
  CDO68163.1  28 ATVIGTSDG-----VVTQFLGIPFAQPPVGNLRLRLPQPIRRYSGTINATTFGNQCIQQTLVTPTIPSNLPPQvapfveamavppdvpQSEDCLNINVI 121
                 444444444.....89********************************************999999988877799************************ PP

                 EESSSSSTTSSEEEEEEE--STTTS-BGCGS-THHHH CS
  COesterase  94 tPkekkeakkklPVlVwihGggfqtgsaseydgsaLa 130
                 +P+ + +   klP+      ggfq+gs+  y  +++a
  CDO68163.1 122 APAGA-KPGDKLPITA--GTGGFQIGSNAVYTSRFIA 155
                 **996.6777779765..6799999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1120.35
//
Query:       CDO68164.1  [L=284]
Description: hypothetical protein BN946_scf184938.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-08   33.7   0.0    0.00093   18.2   0.0    2.7  2  COesterase  Carboxylesterase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.2e-08   0.00093     209     323 ..       9     104 ..       1     129 [. 0.76
   2 !   12.4   0.0     3e-06     0.053     458     497 ..     218     257 ..     195     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.2e-08
                 TTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..C CS
  COesterase 209 rglfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdflpekPeellkseg..k 305
                 +glf+ a ++SG  +sp+   +k + +++ +a+++gc  +s++++veclr+ + e + +a  k             P+    fl+    +ll + +  +
  CDO68164.1   9 EGLFRAAWMESG-GVSPVGNVSKLQPNFDFIASETGC--ASARDVVECLRQAPPEVIKAAMDK------------TPT----FLS--FTRLLLEGKvaD 86 
                 69*********9.899*********************..9999***************99988............333....333..222333323456 PP

                 SEEEEEEETTTTHHHHCC CS
  COesterase 306 vplliGvnkdegllflay 323
                 +p +iG  +deg+lf   
  CDO68164.1  87 IPFIIGACEDEGTLFSLS 104
                 666666666666666655 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3e-06
                 HHHHHHHHHHHHSSTTSTTSS----B.TTTBEEEEESSSS CS
  COesterase 458 kmmtywtnFaktgnPnkeeeekWpkytkeeekylkinlkp 497
                  m++++++Fa++ +Pn+  e++Wp+y++ + +++ + +  
  CDO68164.1 218 DMTDFLVRFANHLDPNGGPEPHWPAYNPASPQLIAFVEGS 257
                 6999**************************9999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2104.26
//
Query:       CDO68165.1  [L=755]
Description: hypothetical protein BN946_scf184938.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-05   24.0   2.2     0.0067   16.2   0.2    2.4  2  zf-RING_11    RING-like zinc finger
    4.8e-05   23.6   0.7     0.0025   18.1   0.1    2.4  2  zf-RING_2     Ring finger domain
     0.0011   19.1   2.7     0.0034   17.6   2.7    1.8  1  zf-rbx1       RING-H2 zinc finger domain
      0.006   16.4   0.2      0.018   14.9   0.2    1.8  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.011   15.5   4.3      0.042   13.7   0.4    2.4  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.021   14.8   0.9      0.098   12.7   0.2    2.2  2  zf-RING_UBOX  RING-type zinc-finger
      0.062   13.4   0.1       0.14   12.3   0.1    1.5  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
      0.092   12.4   0.2       0.19   11.3   0.2    1.5  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        0.4   10.9   1.7        1.5    9.0   0.2    2.4  3  FANCL_C       FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1     0.002       3.9       1      10 [.     676     685 ..     676     692 .. 0.83
   2 !   16.2   0.2   3.3e-06    0.0067      13      29 .]     720     736 ..     712     736 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.002
  zf-RING_11   1 eCsICLeefk 10 
                 +C+IC++ + 
  CDO68165.1 676 DCAICMDAIL 685
                 8******985 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.3e-06
  zf-RING_11  13 qalfilpCsHtFHfkCI 29 
                 ++  ++pC+H+FH  C+
  CDO68165.1 720 KTYSLAPCHHLFHTACL 736
                 566799**********5 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.047        94       2      16 ..     676     690 ..     675     694 .. 0.80
   2 !   18.1   0.1   1.3e-06    0.0025      15      35 ..     720     741 ..     713     744 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
   zf-RING_2   2 eCpICleelssadsv 16 
                 +C+IC++++  + s+
  CDO68165.1 676 DCAICMDAILVDPSL 690
                 6******99877766 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.3e-06
   zf-RING_2  15 svlll.pCgHvfhreClerwlr 35 
                 ++  l pC H fh  Clerwl+
  CDO68165.1 720 KTYSLaPCHHLFHTACLERWLA 741
                 4554559*889*********97 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   2.7   1.7e-06    0.0034      25      46 ..     720     741 ..     675     745 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.7e-06
     zf-rbx1  25 cpvvlGeCgHaFHlhCiskWlk 46 
                  +  l  C+H FH+ C+++Wl 
  CDO68165.1 720 KTYSLAPCHHLFHTACLERWLA 741
                 5667789*************97 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   9.1e-06     0.018       1      31 [.     677     741 ..     677     745 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.1e-06
                 -TTT-S--SS-E...................................E-TTS--B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn..................................elleCkHsfCskCirkilk 31 
                 C+iC++ +                                       l +C+H f+++C++++l 
  CDO68165.1 677 CAICMDAILVDPslrrrskssdgkerpvigratgilgkvggtrktySLAPCHHLFHTACLERWLA 741
                 6666655433223666666666666666666666666666666666799*************986 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3     0.051     1e+02       2       9 ..     677     684 ..     676     690 .. 0.81
   2 ?   13.7   0.4   2.1e-05     0.042      13      32 ..     722     741 ..     718     744 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.051
  zf-C3HC4_2   2 CpiCldml 9  
                 C+iC+d +
  CDO68165.1 677 CAICMDAI 684
                 *****975 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.1e-05
  zf-C3HC4_2  13 svvtpCgHvfCqkCilrsLe 32 
                   ++pC H f+  C+ r+L 
  CDO68165.1 722 YSLAPCHHLFHTACLERWLA 741
                 4678**************95 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.63   1.3e+03       1       7 [.     677     683 ..     677     696 .. 0.76
   2 ?   12.7   0.2   4.9e-05     0.098      14      26 ..     724     739 ..     718     748 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.63
  zf-RING_UBOX   1 CpIClel 7  
                   C IC++ 
    CDO68165.1 677 CAICMDA 683
                   999*984 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.9e-05
  zf-RING_UBOX  14 l.pCGHtFCreCl..w 26 
                   l pC+H F+  Cl  w
    CDO68165.1 724 LaPCHHLFHTACLerW 739
                   338**********554 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.8e-05      0.14      47      67 ..     722     742 ..     710     746 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
                 EEEBTTS-EEEHHHHHHHHHH CS
  zf-ANAPC11  47 lvlGkckhnfhlhcilkwlet 67 
                   l  c+h fh+ c+ +wl+ 
  CDO68165.1 722 YSLAPCHHLFHTACLERWLAI 742
                 56778*************975 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   9.8e-05      0.19      22      38 ..     725     741 ..     714     745 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-05
  Zn_ribbon_17  22 gvCeHvlHasCarewfe 38 
                     C+H  H++C++ w+ 
    CDO68165.1 725 APCHHLFHTACLERWLA 741
                   57*************86 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.7   1.1e+04      39      59 ..     588     608 ..     587     609 .. 0.84
   2 ?   -0.4   0.0      0.68   1.4e+03      55      66 ..     674     685 ..     669     692 .. 0.67
   3 ?    9.0   0.2   0.00076       1.5      27      42 ..     726     741 ..     717     745 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.7
                 HHHHHHHSSS-TTT--EEE-T CS
     FANCL_C  39 eWlrslkesrqsfdvlfGeCP 59 
                 e+l + + +r +f + f  CP
  CDO68165.1 588 EYLVGTTLGRLFFVCYFLVCP 608
                 677788889999999999999 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.68
                 EEE-TTT-SEEE CS
     FANCL_C  55 fGeCPyCkkkis 66 
                 +G+C  C + i 
  CDO68165.1 674 LGDCAICMDAIL 685
                 566666666555 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00076
                 T----B-SGGGHHHHH CS
     FANCL_C  27 kCnkkfHsaCLkeWlr 42 
                  C + fH+aCL+ Wl+
  CDO68165.1 726 PCHHLFHTACLERWLA 741
                 599***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5476.00
//
Query:       CDO68166.1  [L=402]
Description: hypothetical protein BN946_scf184938.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   10.4  40.4       0.31    9.9  40.4    1.2  1  DUF5585   Family of unknown function (DUF5585)
        2.1    6.8   8.0        2.4    6.6   8.0    1.1  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> DUF5585  Family of unknown function (DUF5585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  40.4   3.5e-05      0.31      54     266 ..      79     288 ..      35     304 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.5e-05
     DUF5585  54 rlatvaasPvtltkGtsaatlnstevta..edtsrtdvsePvtsegaadgvassalttaasstsssaassaPttvasstslsapraevsrtnasvsart 150
                 +l t aa P+   +Gts++   +++  a    t  t+ s  + +++aa ++a+sa ++aass+ ++a s+a   va+s++ ++  a++s+t++s+ a  
  CDO68166.1  79 GL-TCAALPLVNSRGTSITCTTTADRDAriAATGATQASGNANNGAAASSAAASASSSAASSS-AAASSAAASSVATSSAAASSSAAASSTASSS-A-- 172
                 44.89999*********9876555444411456668888888888888888888888888877.4555556666776664444444444433322.2.. PP

     DUF5585 151 aiassvaaassiPttaassavstlvpvsgtvtsavatghPslstalaqvpssssaart....aalatl.ataaqtvataantsdPmsrtlsPsksmpsd 244
                  +a+s +aa++        +++ l  v +t     +  +P+++    qvps +s+ +     a++  l  t+ q + t +    Pm    + + +mps 
  CDO68166.1 173 -AAASGTAAAGGDDSDPQKSTTLLQSVIATGFQNDGQDQPTAG----QVPSLTSSNNFinfcATVPNLpITNGQQIKTGSCNPAPMG-IIAATTNMPSS 265
                 .222222222222222222222222222333333444455554....4444444444333337776663477788888888889999.78889999999 PP

     DUF5585 245 tsasPip.atraqaqGltsqvsv 266
                    +P   at +  q  t+q+++
  CDO68166.1 266 KFVNPKNgATIPANQNFTIQMAI 288
                 99999753788999999999886 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.0   0.00027       2.4     305     375 ..     117     185 ..      87     280 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00027
    Macoilin 305 gsesellveesvkskssssssssnknskkasagsags.snssskkhsessksvtsssssknskkqklpaGks 375
                 g   + +    ++s ++s+sss++++s  as+ +a+s ++ss++  s+++ s t sss++      +++G  
  CDO68166.1 117 G---NANNGAAASSAAASASSSAASSSAAASSAAASSvATSSAAASSSAAASSTASSSAAAASGTAAAGGDD 185
                 2...22222222222222222222222222222222202222222222333333333222222222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1480  (0.0825478); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.36s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 2174.99
//
Query:       CDO68167.1  [L=497]
Description: hypothetical protein BN946_scf184938.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3179.90
//
Query:       CDO68168.1  [L=483]
Description: Glycoside Hydrolase Family 32 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-80  268.6   1.6      1e-79  268.3   1.6    1.1  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    3.5e-09   36.9   0.0    7.3e-09   35.8   0.0    1.6  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.3   1.6   1.2e-83     1e-79       9     296 ..       1     290 [.       1     302 [. 0.91

  Alignments for each domain:
  == domain 1  score: 268.3 bits;  conditional E-value: 1.2e-83
                      EEEEEEEEE.CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-...........EEEEEEEE-T CS
  Glyco_hydro_32N   9 lNDPnglvy.ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk...........lvllYTgnvk 90 
                      +NDPngl+   +g+Yhl+Yqynp g   gn +Wgha+S+Dl hW+++p+a+ p +  +++ +fSGsavvd ++           +v++YT n+ 
       CDO68168.1   1 MNDPNGLFLdRNGTYHLYYQYNPAGLIAGNQHWGHATSQDLYHWQNQPIAIFPPN--NDSQVFSGSAVVDVNNtsgffpdqdngVVAIYTLNTP 92 
                      9******9979******************************************96..4456***********99******************98 PP

                      CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCESEECC.TTTEEE CS
  Glyco_hydro_32N  91 eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelaselleskkekggmwE 184
                      + +qvQ +ays+d g++ft+y++npvi++    n+++fRDPkv+w+e ++w mvv++++  +  i +Y+s+dlk+w++as+++++    g+++E
       CDO68168.1  93 S-AQVQEIAYSNDGGYTFTRYSGNPVIDS----NSTQFRDPKVIWHE-DHWAMVVAHSQ--DFVIGVYTSQDLKTWSHASNFSHHGL-LGVQYE 177
                      8.**************************7....89**********98.89*********..99**********************98.8***** PP

                      EEEEEEEECSTT-.ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC.TTT.CEEEEEEES-TTTHCC CS
  Glyco_hydro_32N 185 cpdlfeldekdee.ekvklvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed.edk.rriligWmgewdseea 275
                      cp+l++++++ ++ +   l+++++p g   ++s+++yf g+f  ++++f++ ++ ++  D  kd YA q f+  +d+ +++ i+W+++w++  +
       CDO68168.1 178 CPNLVKMPVEGSNdSMYLLTISINP-GAPLGGSTTQYFPGTF--NGTHFVPVDGAARIADFAKDNYAGQFFYGiPDGrDALSIAWASNWQYG-Q 267
                      **********633044455666677.5556************..9******9*********************9888899***********5.8 PP

                      CCC...CTEE-EE--EEEEEES- CS
  Glyco_hydro_32N 276 dvp..ekgwagalslpReltlkd 296
                      +vp  ++gw++a+slpR+ +l +
       CDO68168.1 268 SVPtaQEGWRSAMSLPRRNALAN 290
                      888899***********977755 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   8.2e-13   7.3e-09      73     147 ..     375     450 ..     317     462 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 8.2e-13
                      TEEEEE-TTS.G...GTTT----.EEEE---....-EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEEEEEEE.. CS
  Glyco_hydro_32C  73 sslvvdRtks.getdfkndfasg.esaplel..dgklkLrilvDkssvEvFvndGrtaiTsrvyPtedstgirlfsngg 147
                      + +++dR    g   f+n f ++  sap +l  dg+ +L  +vD+s++EvFv+ G    Ts +y t++ t+ +l + g 
       CDO68168.1 375 GDFYLDRGGVrG---FDNPFFTDkFSAPSPLraDGTWTLSGVVDRSVLEVFVDRGARSATSAFYATQPLTSFSLSTAGL 450
                      567788888844...898899998********999*******************************9999999876644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3399.79
//
Query:       CDO68169.1  [L=719]
Description: hypothetical protein BN946_scf184938.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-09   37.3   1.8    4.5e-09   35.9   1.8    1.7  1  LRR_8     Leucine rich repeat
    7.1e-07   29.5   1.7    2.2e-06   27.9   0.4    2.4  3  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.027   14.5   3.2         36    4.8   0.1    3.5  3  LRR_6     Leucine Rich repeat
       0.18   12.5   0.9         79    4.4   0.0    4.3  4  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   1.8     1e-12   4.5e-09       7      61 .]     330     382 ..     328     403 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1e-12
                 E-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   7 dLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  L nN ++ l+ e F+ +s+L+vL+L++N lt++ p  +++L+sL++L+L +N+L
  CDO68169.1 330 FLANNFISRLPVELFR-VSSLTVLSLRSNALTSV-PPQIVQLTSLQELNLAQNKL 382
                 6999************.9****************.899***************97 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.62   2.8e+03       7      18 ..     330     341 ..     327     345 .. 0.75
   2 !   27.9   0.4   4.9e-10   2.2e-06       2      39 ..     348     382 ..     347     387 .. 0.89
   3 ?   -3.1   0.0       2.8   1.3e+04      24      33 ..     393     402 ..     388     405 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.62
                 E--SS---E-S- CS
       LRR_4   7 dLsnNqltdipl 18 
                  L+nN ++ +p 
  CDO68169.1 330 FLANNFISRLPV 341
                 688999998875 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 4.9e-10
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 +L+vL+L++N lt++p+ + +l++L+eL+L +N +   l
  CDO68169.1 348 SLTVLSLRSNALTSVPPqIVQLTSLQELNLAQN-K---L 382
                 7****************8779*********888.4...3 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.8
                 T--EEE-.-S CS
       LRR_4  24 nLkeLdLsgN 33 
                 +L++L++ gN
  CDO68169.1 393 HLTKLTVAGN 402
                 4777777776 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.008        36       3      16 ..     347     360 ..     347     362 .. 0.89
   2 ?    4.2   0.1     0.012        53       2      15 ..     369     382 ..     368     383 .. 0.88
   3 ?    4.4   0.0     0.011        48       2      14 ..     391     403 ..     390     405 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.008
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++Lt L+L++N ++
  CDO68169.1 347 SSLTVLSLRSNALT 360
                 68*********998 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
       LRR_6   2 nthLteLdLsgNdI 15 
                  t+L+eL+L+ N++
  CDO68169.1 369 LTSLQELNLAQNKL 382
                 589*********97 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.011
       LRR_6   2 nthLteLdLsgNd 14 
                 n+hLt+L ++gN 
  CDO68169.1 391 NMHLTKLTVAGNP 403
                 9**********95 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   6.8e+03       5      19 ..     212     226 ..     211     231 .. 0.66
   2 ?   -0.2   0.0      0.56   2.5e+03       6      20 ..     330     344 ..     311     346 .. 0.84
   3 ?    2.2   0.0     0.095   4.3e+02       1      18 [.     348     365 ..     348     368 .. 0.86
   4 ?    4.4   0.0     0.018        79       1      17 [.     371     387 ..     371     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.5
       LRR_1   5 LdLsnnpllglppns 19 
                 +dLs+ +l + p+ +
  CDO68169.1 212 IDLSGTSLNRGPITH 226
                 799999995555443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
       LRR_1   6 dLsnnpllglppnsf 20 
                  L nn++++lp + f
  CDO68169.1 330 FLANNFISRLPVELF 344
                 489****99998776 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.095
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 +L++L L++n l++ pp+
  CDO68169.1 348 SLTVLSLRSNALTSVPPQ 365
                 699********9998886 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.018
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L++L+L +n l  lp+
  CDO68169.1 371 SLQELNLAQNKLRWLPA 387
                 69********9965554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 4779.73
//
Query:       CDO68170.1  [L=282]
Description: hypothetical protein BN946_scf184938.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-32  112.5   0.0      2e-32  112.1   0.0    1.1  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.1e-36     2e-32      28     168 ..      90     253 ..      65     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.1e-36
                     E...............EEEEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSGE......... CS
  Glyco_hydro_16  28 k...............esgsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgkr......... 98 
                     +                +g++++s+++ lyG+v  +   + + Gvv+a +l+    ++hdEiDiE++G d+++ qtnv+++   ++         
      CDO68170.1  90 RpqgkiatkqnvndkvAEGATLNSTFTLLYGTVTFTFSGPATPGVVSAAILIA---DQHDEIDIELVGGDPKHWQTNVFAPSPRDEqplfgvfgq 181
                     455555555566666567*********************************97...99*********************9998885566677775 PP

                     EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHHHT....--EESEEEEEEEEEEBSHHHSSE CS
  Glyco_hydro_16  99 ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeaeev...kyPqftpmkvavslwpgsdwateq 168
                      +++  +++  ++ H+Y+i+W++d+i+++VDg ++rtl k +++++   +yP  +p ++++++w++s+ a + 
      CDO68170.1 182 IENYLSEEKSVDATHSYTIDWNEDRIQWSVDGSLIRTLHKGDTKKNgalHYPA-HPARLQLGIWDASSPAGTS 253
                     4455558889999******************************95547779**.*************655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1949.90
//
Query:       CDO68171.1  [L=255]
Description: hypothetical protein BN946_scf184938.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-06   28.1   2.8    2.5e-06   28.1   2.8    2.2  2  Egh16-like    Egh16-like virulence factor
  ------ inclusion threshold ------
        1.2    7.6   5.5        1.4    7.5   5.5    1.1  1  SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)


Domain annotation for each model (and alignments):
>> Egh16-like  Egh16-like virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   2.8   2.7e-10   2.5e-06      66     171 ..      54     146 ..      19     152 .. 0.78
   2 ?   -0.6   2.8      0.18   1.6e+03       5      67 ..     158     219 ..     148     243 .. 0.48

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.7e-10
  Egh16-like  66 vniaaeiaklmagaesglptvsaggtltmtvhqvnq..DGaGpltckiDststgtdakalqkaevtknvpGkgglsaakntdfplkvqlpagltCtGtv 162
                 vnia++i      ++s+  +++ +gt   t+   n+  DG+  +t+ +D+t+tg   k++ +a+v++n       + +++   +l+vqlp++++C+G +
  CDO68171.1  54 VNIAQTI------DTSTAVQAAGNGTFAATIINFNAgvDGSRQVTALVDPTGTG---KSFVSADVLQNGD----KNPSNTGSQQLVVQLPSNTKCSGGA 139
                 3344433......4556788999************999*************774...5688889999865....3467888899*************95 PP

  Egh16-like 163 ggaknvCiv 171
                    k+ C+v
  CDO68171.1 140 --SKDKCLV 146
                 ..4555776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
  Egh16-like   5 vitkvtGangvngpglgvadgtprdgtsrasgsqaDttvfrdkeikkkkasglGrtlgsgkvn 67 
                 v+++  G   v+ +  +  +  p+++ts+a ++++ t+  + ++ +++ ++g  +t+gs +  
  CDO68171.1 158 VVVQQAGGSSVSDSNTNASTAAPAASTSAAVSATKATATAAGQT-ATQASQGAQSTTGSLTAA 219
                 44444444444444444444555555554444444444333333.222333333333332333 PP

>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.5   0.00015       1.4     552     661 ..     114     218 ..      29     236 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00015
  SWI-SNF_Ssr4 552 apaqataqeaqsaesededvemggteekeketetapdaatesgdwVvvpk.ggkspseaaakaaaeasaeagaaaaekaakesaakateaagkeatt 647
                    ++++++ ++q   +  ++ + +g ++ +++   + ++ ++ g+ Vvv++ gg+s s+++++a+++a+a++++aa ++++     ++++aag++at+
    CDO68171.1 114 DKNPSNTGSQQLVVQLPSNTKCSGGAS-KDKCLVSFTTVSGFGNCVVVQQaGGSSVSDSNTNASTAAPAASTSAAVSATK-----ATATAAGQTATQ 204
                   333444455666666666667777666.66777788889999******88344444444333333333333222222222.....222222222222 PP

  SWI-SNF_Ssr4 648 paakaasaaatpea 661
                   +++ a+s++++ +a
    CDO68171.1 205 ASQGAQSTTGSLTA 218
                   22111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1694  (0.0944838); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1770.75
//
Query:       CDO68172.1  [L=673]
Description: hypothetical protein BN946_scf184938.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-25   89.5   0.0    3.8e-25   88.4   0.0    1.6  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   2.1e-29   3.8e-25       2     266 ..      42     296 ..      41     297 .. 0.88
   2 ?   -2.7   0.0      0.13   2.4e+03      31      58 ..     373     400 ..     356     433 .. 0.72

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.1e-29
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili.....hedfsspssslwi 93 
                   d++f  ++   p+lh+p+f  +   e+ +     + + +l+ +alG+++s++     + + +  s   +      + ++     h ++  p++ l+ 
    CDO68172.1  42 DLYFRKYNDFTPLLHEPNFIQSI-REGLHLRHGGFGATVLLACALGSRYSRDKRVLLDGTNSWRS-AGW------KWYQrvddmHKSLLAPVQ-LYD 129
                   89*********************.666666666666677***********999988876666544.555......33335577789999****.*** PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLP..cd 188
                   lq   +++++ ++++     + ++gv +r a ++g hr++ y+       ++  e e +rR +w+  +l+++ +  lGrpp +++++ ++++P  cd
    CDO68172.1 130 LQICAMMSMFIQGTTAPQTMWVLIGVGIRKALDVGAHRKSMYKP------QPSVEDELWRRAFWTLLFLEIWSSYGLGRPPSIHEEEYDVAFPteCD 220
                   ******************************************99......66666**************************99********995456 PP

  Fungal_trans 189 dddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq..seklswveeleraldnWr 266
                   d+ +w  dd +  +++    s +++++  +  ll+L++i++  +++++si+k+  q  +   +  ++ v +l+++l++W 
    CDO68172.1 221 DE-YWTNDDPALAFKQP---SGKPSRVAAFVTLLRLSRIVAYALRTIFSIRKTRTQLGSGdqQWEERIVAQLDSELNKWV 296
                   66.99999999999999...99**********************************999986666778899999999996 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.13
  Fungal_trans  31 ksayaspllllailalGalfsesetkes 58 
                   +s + s++l l++++ G++ s+ + + +
    CDO68172.1 373 SSVNVSAALSLVMHMWGQRRSGRHRSAD 400
                   5567788888999998888777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4377.59
//
Query:       CDO68173.1  [L=582]
Description: hypothetical protein BN946_scf184938.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          4    7.0   7.7        7.3    6.1   7.7    1.5  1  PPP4R2    PPP4R2


Domain annotation for each model (and alignments):
>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.7   0.00041       7.3     193     286 ..     240     358 ..     153     360 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00041
      PPP4R2 193 kteselspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvkvee..........................kdddeeddeedtdyv 265
                  +es++++ ++ +       l++ d++e  + d+e+++ a + + ++ ++ es++ ++                          k++  ed+ +d+d+ 
  CDO68173.1 240 HSESQSDSLRASLRHVGEGALDDSDSSESGS-DEEDTAGAGNLRGDSDQEGESSIPSAssrapsatylhrttaahpsplsrvagKQTWTEDEKDDEDSP 337
                 2223444444444433333333333333322.2222333333333333333333333333334444555555555666666666444445555555555 PP

      PPP4R2 266 eeeeddesedddeeeeeeeee 286
                    +++esedd+   eee++e
  CDO68173.1 338 SPGSTSESEDDEMYYEEEDDE 358
                 556777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3842.01
//
Query:       CDO68174.1  [L=293]
Description: hypothetical protein BN946_scf184938.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-30  106.0   0.0    3.2e-30  105.5   0.0    1.2  1  Methyltransf_10  RNA methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   1.8e-34   3.2e-30     172     299 .]      32     149 ..      28     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.8e-34
                      STTSS-EEEEEE-S---SS------------...---.....---------TTTSHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHH CS
  Methyltransf_10 172 ieenerydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqkaelyceGGevafikklieeskqlakqvlWfttlvskkenlap 265
                      i+++e+yd+t+CnPPf++s +e  +++e k+  l        +p+ + +G   e++++GGe+af+++++ees +++++ +Wft++v+k ++l++
       CDO68174.1  32 IDRSEIYDFTMCNPPFYSSREEVLQSAEAKV--L--------EPNAVCTGADIEMITPGGEAAFVGRMVEESTEMRERCRWFTSMVGKMSSLTS 115
                      6789********************9999998..5........467899********************************************** PP

                      HHHHHHHTT-SEEEEEEEEETTEEEEEEEEES-- CS
  Methyltransf_10 266 lkeelkklGaskvtvvelaqGqklsrfiaWsfld 299
                      + e+l++  + +  ++el+qGq+ +++iaWsf d
       CDO68174.1 116 IVESLRIKEIDNYAITELVQGQTRRWVIAWSFGD 149
                      ********************************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1999.98
//
Query:       CDO68175.1  [L=466]
Description: hypothetical protein BN946_scf184938.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 3054.96
//
Query:       CDO68176.1  [L=362]
Description: hypothetical protein BN946_scf184938.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-06   26.4   0.0    1.3e-05   25.4   0.0    1.4  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   7.1e-10   1.3e-05      14     108 ..      31     133 ..      19     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7.1e-10
                 EEEETTTEEEEE-HHHHHHH-HHHHHHHTST........TTTTCCCE....EEEETTSGHHHHHHHHHHHHHSEEEC-....CGGGHHHHHHHHHHHT- CS
         BTB  14 tlvvgdgkefkahkavLaarSpyFkalftsk........eieessvs....eielddvepeafealLefiYtgeleit....seenleelLaaadllqi 96 
                 +l +g +  fk+h+  L  +S++F+++f+                 +     +el   +p+++  lL+ +Y g   ++    +   + ++L++  ++ i
  CDO68176.1  31 ILFAG-NVAFKVHRGQLVRHSDVFYDMFSLPqpveggqgL------VegcpWVELY-DDPSDVLHLLRALYDGLYFTKptsgDFCAISAVLRLSTKYLI 121
                 56678.699*********************9886543321......2355544433.4899**********998888799998899************* PP

                 HHHHHHHHHHHH CS
         BTB  97 prlkkaceeflk 108
                 ++l + c e l+
  CDO68176.1 122 EHLRQRCIERLE 133
                 *******98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2504.37
//
Query:       CDO68177.1  [L=415]
Description: hypothetical protein BN946_scf184938.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-81  274.2   2.4      1e-81  274.2   2.4    1.5  2  Thiolase_N     Thiolase, N-terminal domain
    9.1e-43  144.8   0.5    1.9e-42  143.8   0.5    1.6  1  Thiolase_C     Thiolase, C-terminal domain
    0.00056   19.6   2.3      0.072   12.7   0.3    3.2  3  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.2   2.4   1.7e-85     1e-81       1     260 []      28     284 ..      28     284 .. 0.96
   2 ?   -2.5   0.0      0.43   2.6e+03      57      92 ..     371     407 ..     329     411 .. 0.64

  Alignments for each domain:
  == domain 1  score: 274.2 bits;  conditional E-value: 1.7e-85
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 vviv+a+r++i+k ++g +kd++ ee+l+ +l+a+ +kag++p+ + ++ vGnvl  g g++ +r+aal++gip++vp +tvn++csSgl+av+ +a++
  CDO68177.1  28 VVIVAAVRSAITKaKKGGFKDTRPEEILSGVLRAVYTKAGINPALIGDITVGNVLPPGGGATASRMAALHSGIPNTVPISTVNRQCSSGLQAVNIIAGE 126
                 8************9************************************************************************************* PP

                 HHTTSHSEEEEEEEEESTTS-EE.ETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTT CS
  Thiolase_N  99 iaageadvvvagGvEsmsnapta.estdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkde 196
                 i +g++d+ +  GvEsm+  + + ++ d  s++ l +++a+d+l+p+           G+t+en+a++++isR+ qdefA+ks qkaaaaqkagkFkde
  CDO68177.1 127 IISGQIDIGIGAGVESMTFGYGSgAMPDGFSEAVLSNKEAEDCLLPM-----------GITSENVAADFNISRQVQDEFAAKSFQKAAAAQKAGKFKDE 214
                 ******************887641455999**************999...........***************************************** PP

                 BE-EEEEESSSE.E.....EE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 197 ivPvkvkgkkgk.k.....tvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmses 260
                 ivP+kvk  + k +     +vd+d+++r +vtae+LaklkpaFkk+G+++Agnasq+sDGaaavll+++s
  CDO68177.1 215 IVPLKVKWTDPKtQeekeiVVDHDDGVRDGVTAESLAKLKPAFKKDGSTHAGNASQVSDGAAAVLLARRS 284
                 ******9888885478888***********************************************9875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.43
                 TSTSCHHHHHHHHTTS-TTSEEE.EEEHGGGHHHHHH CS
  Thiolase_N  57 gegqniarqaalkagipeevpav.tvnkvcsSglkav 92 
                   g + arq+a  ++i++++ +    + +c+ + +++
  CDO68177.1 371 PLGCTGARQVATGLNIAKQTGSKiFCTSMCIGSGMGM 407
                 5677788888888888777654314567776655555 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.5   3.2e-46   1.9e-42       3     121 ..     293     411 ..     291     413 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 3.2e-46
                 -SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHCT CS
  Thiolase_C   3 plakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkkeg 101
                 +++k+++ + vgv+p+i+g+gPayai++vl+ +glt +++d++EinEAFa+qa++++++l++  ekvN+nGGaia+GHPlG++GaR+v+t l+  k+ g
  CDO68177.1 293 IVGKFVAATAVGVPPRIMGVGPAYAIPRVLELTGLTKDEVDFYEINEAFASQAVYSIQSLGIPFEKVNLNGGAIAIGHPLGCTGARQVATGLNIAKQTG 391
                 577889999****************************************************************************************** PP

                 TSEEEEEEEETTTEEEEEEE CS
  Thiolase_C 102 gklgvaalCigggqgvalvi 121
                 +k+  +++Cig+g+g+a+++
  CDO68177.1 392 SKIFCTSMCIGSGMGMAAIF 411
                 *****************997 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.011        64     186     216 ..      18      48 ..      11      52 .. 0.84
   2 !   12.7   0.3   1.2e-05     0.072     169     206 ..     107     144 ..      89     155 .. 0.90
   3 ?    1.7   0.0     0.027   1.6e+02     234     253 .]     267     286 ..     246     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.011
                    HHHHHTTS-SEEEEEEEE---SHHHHHHHHH CS
  ketoacyl-synt 186 vqslrsgeadvalaGGvellltpeavagfsa 216
                     ++l +++ dv+++ +v  ++t  + +gf+ 
     CDO68177.1  18 AKALAQHDDDVVIVAAVRSAITKAKKGGFKD 48 
                    489*******************999888876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.2e-05
                    EEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 169 vtvdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                     tv   CsS+l av+ +  ++ sg++d+ +  Gve ++
     CDO68177.1 107 STVNRQCSSGLQAVNIIAGEIISGQIDIGIGAGVESMT 144
                    577778*****************************885 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.027
                    -SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 234 dGfvlGEGvGavvLkrleda 253
                    +   +++G++av+L r+++a
     CDO68177.1 267 NASQVSDGAAAVLLARRSTA 286
                    667789**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3011.70
//
Query:       CDO68178.1  [L=510]
Description: hypothetical protein BN946_scf184938.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-21   77.5   0.3    3.1e-21   76.3   0.2    1.4  1  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer
      1e-08   35.3   0.0    1.9e-08   34.4   0.0    1.5  1  DUF1298         Protein of unknown function (DUF1298)


Domain annotation for each model (and alignments):
>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.2   3.4e-25   3.1e-21      37     144 ..      83     193 ..      52     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.4e-25
  WES_acyltransf  37 llrrlreaieqreeraprlrqkvveeplglaapvWvededfDldyHvRrvalpaPGterellelvsrLasspLDrsrPlWevhviEGleggr... 128
                     ++ ++  ++ + +e+ pr+rq++ ++   l  +v+v+d++f++  H+R  +lp+P+++rel +lv++  ++p D+srPlW++ ++E   ++    
      CDO68178.1  83 DVTDFNPQLTRQAEKFPRYRQRLDSTGKLLRGAVFVDDPEFNVYNHIRLRRLPEPAGKRELDALVGDFIAEPWDLSRPLWDMILVENYHDDDdav 177
                     56778888899999*************************************************************************86653333 PP

  WES_acyltransf 129 iAillkvHHAliDGvg 144
                     +A++++ HH l DG g
      CDO68178.1 178 CAVVARGHHTLSDGQG 193
                     99************76 PP

>> DUF1298  Protein of unknown function (DUF1298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.1e-12   1.9e-08      49     130 ..     400     480 ..     341     497 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.1e-12
     DUF1298  49 llkllpakvaaalikrllsnttlviSNvpGP.qeelylaGaplkaiypvvpglpgqalnitvlSyagklriglavdkdlvpdp 130
                 l++++  ++ +++++  l+++t +++N+pGP ++++++aG ++++++ + p+  +  +++ ++Syag + i++ +d  +vp  
  CDO68178.1 400 LVRVMRRWLIKPIVDACLESFTAILTNIPGPaKKPITMAGVEVAKLVALPPQGGAGTIGMGIISYAGGICIAVSAD--MVPGS 480
                 56667777888888889*************94579*********************************99999998..55544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3679.02
//
Query:       CDO68179.1  [L=1084]
Description: hypothetical protein BN946_scf184938.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-14   53.0  14.0      0.024   14.9   0.0    9.9 10  HEAT           HEAT repeat
    9.9e-14   51.5  15.2     0.0011   19.4   0.1   11.3 13  HEAT_EZ        HEAT-like repeat
    1.2e-12   48.1   6.8      0.025   14.9   0.7    7.2  8  HEAT_2         HEAT repeats
    8.4e-10   38.4   0.9    3.1e-07   30.2   0.2    3.5  3  IBN_N          Importin-beta N-terminal domain
    2.7e-08   34.0   0.1     0.0026   17.8   0.0    3.9  4  Cnd1           non-SMC mitotic condensation complex subunit 1
    1.1e-06   28.0   1.6     0.0043   16.2   0.0    4.4  5  IFRD           Interferon-related developmental regulator (IF
    0.00096   18.9   0.5       0.17   11.6   0.0    4.3  4  RIX1           rRNA processing/ribosome biogenesis
     0.0011   19.5   0.1       0.33   11.6   0.0    4.5  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
       0.14   11.9   3.4        4.1    7.2   0.0    4.0  3  XPC-binding    XPC-binding domain
        8.7    6.5   9.4    1.2e+02    3.0   0.0    6.0  8  Arm            Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   2.4e+03       2      21 ..      42      62 ..      41      63 .. 0.83
   2 ?    2.8   0.1     0.098   1.8e+02       9      29 ..      97     117 ..      94     118 .. 0.85
   3 ?    1.5   0.0      0.26   4.7e+02       1      30 [.     128     157 ..     128     158 .. 0.88
   4 !   14.9   0.0   1.3e-05     0.024       3      30 ..     171     199 ..     169     200 .. 0.89
   5 ?   -2.1   0.0       3.9     7e+03       3      31 .]     351     379 ..     349     379 .. 0.80
   6 !   14.3   0.2     2e-05     0.035       3      30 ..     392     419 ..     390     420 .. 0.92
   7 ?    3.1   0.1      0.08   1.4e+02       1      29 [.     431     457 ..     431     460 .. 0.70
   8 ?    0.7   0.0      0.47   8.4e+02       1      15 [.     757     771 ..     757     785 .. 0.76
   9 ?   -3.0   0.1       7.2   1.3e+04      17      27 ..     880     890 ..     880     892 .. 0.88
  10 !   13.6   0.0   3.4e-05     0.061       1      30 [.     905     934 ..     905     935 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
                HHHHHHHH.T-SSHHHHHHHH CS
        HEAT  2 lPlllkll.sDpspeVReaAa 21
                +P+l + + ++p+  VR+ Aa
  CDO68179.1 42 IPALTQIIaESPEQAVRQLAA 62
                688888866999*****9997 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.098
                 HT-SSHHHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgalae 29 
                 ls +s  VR ++a+ ++a+a+
  CDO68179.1  97 LSESSNLVRHSTARVIAAIAS 117
                 5667889************98 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.26
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 llP+l + + +p +  Re  ++ L +++e+
  CDO68179.1 128 LLPFLEQTCLSPQATHREVGVYILFTILEN 157
                 89*****9**********999888777765 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHT-.SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 PlllkllsD.pspeVReaAakaLgalaev 30 
                  l+ kll+D +s+eVR ++++aLg +a++
  CDO68179.1 171 KLFEKLLQDpESAEVRITTVRALGVVAQY 199
                 6899*****88888***********9997 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.9
                 HHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalaevl 31 
                  l+++  s+  +  R+ A +aLg  +e++
  CDO68179.1 351 QLIQQYFSSAVAGHRRGAMLALGVSVEGC 379
                 57888889999999999*9**99876665 PP

  == domain 6  score: 14.3 bits;  conditional E-value: 2e-05
                 HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalaev 30 
                 P++   l+D++++VR+a++ a+  l+e+
  CDO68179.1 392 PIIEAGLQDQDASVRKASCVAVSCLCEW 419
                 889999********************97 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.08
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P++++l +Dp  +  ++A+ aL al+e
  CDO68179.1 431 LVPTMMQLVNDPVTQ--RTACTALDALLE 457
                 789999999999999..555555555544 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.47
                 HHHHHHHHHT-SSHH CS
        HEAT   1 llPlllkllsDpspe 15 
                 ++P+ll++ ++++ +
  CDO68179.1 757 IIPHLLEMYESEDNK 771
                 89******9887766 PP

  == domain 9  score: -3.0 bits;  conditional E-value: 7.2
                 HHHHHHHHHHH CS
        HEAT  17 ReaAakaLgal 27 
                 R+ A+ +L ++
  CDO68179.1 880 RSCAIGCLSEI 890
                 8999****998 PP

  == domain 10  score: 13.6 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ll l+ ++lsD++peV ++Aa a g l+e+
  CDO68179.1 905 LLELFYRALSDEEPEVQCNAAFASGLLIEH 934
                 7999******************98888876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.38   6.9e+02      24      51 ..       4      29 ..       2      30 .. 0.80
   2 ?    0.0   0.0      0.72   1.3e+03      30      49 ..      42      62 ..      39      63 .. 0.85
   3 ?    0.5   0.0      0.51   9.2e+02       3      14 ..     104     115 ..      83     142 .. 0.64
   4 !   16.1   0.0   6.9e-06     0.012      23      54 ..     163     195 ..     157     196 .. 0.92
   5 ?   -3.4   0.0       8.5   1.5e+04      21      34 ..     251     264 ..     247     271 .. 0.83
   6 ?   -0.5   0.0         1   1.9e+03       3      42 ..     276     317 ..     273     319 .. 0.76
   7 !   19.4   0.1   6.2e-07    0.0011       4      53 ..     365     414 ..     362     416 .. 0.94
   8 ?   -1.6   0.0       2.3   4.2e+03      33      52 ..     435     452 ..     429     455 .. 0.57
   9 ?    1.2   0.1      0.32   5.7e+02       5      53 ..     446     494 ..     442     495 .. 0.71
  10 ?   -0.8   0.0       1.3   2.3e+03       8      30 ..     535     558 ..     528     560 .. 0.80
  11 ?    1.9   0.0      0.19   3.3e+02       2      34 ..     571     603 ..     570     610 .. 0.78
  12 ?    5.7   0.0     0.012        21      28      51 ..     904     927 ..     880     927 .. 0.85
  13 ?   -1.4   0.1         2   3.6e+03       4      34 ..     968     996 ..     965    1000 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.38
     HEAT_EZ 24 plvpeilpaLlalLnddsdeVRaaAaga 51
                ++v+ + ++L++    ++d+V+ +Aa a
  CDO68179.1  4 TFVQNLHALLVQST--SNDTVQLKAATA 29
                78999999999999..899997776654 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.72
     HEAT_EZ 30 lpaLlalL.nddsdeVRaaAa 49
                +paL +   ++++++VR+ Aa
  CDO68179.1 42 IPALTQIIaESPEQAVRQLAA 62
                89999999899999***9997 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.51
     HEAT_EZ   3 vRraAawaLGrl 14 
                 vR++ a++++++
  CDO68179.1 104 VRHSTARVIAAI 115
                 444444444444 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 6.9e-06
     HEAT_EZ  23 qplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 +++++   +++ +lL+d+++ eVR ++++aLg 
  CDO68179.1 163 ETHIQSFFKLFEKLLQDPESaEVRITTVRALGV 195
                 689999***********9999**********95 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 8.5
     HEAT_EZ  21 llqplvpeilpaLl 34 
                 ll +++pe+  +Ll
  CDO68179.1 251 LLGQHIPELAEFLL 264
                 78899999999998 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 1
     HEAT_EZ   3 vRraAawaLGr..laggepellqp.lvpeilpaLlalLnddsd 42 
                 +R  A++aL +  +    +  ++  l p+il  L++  + d++
  CDO68179.1 276 LRVLALNAL-NwtVQYKKSKVQSHnLAPAILEGLMPITTEDEP 317
                 688888888.887777777776667999999999998877766 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 6.2e-07
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 Rr+A +aLG   +g++e++ pl  ++ p   a+L+d +++VR+a++ a +
  CDO68179.1 365 RRGAMLALGVSVEGCSEYMTPLMNQVWPIIEAGLQDQDASVRKASCVAVS 414
                 9*********888*********************************9987 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 2.3
     HEAT_EZ  33 LlalLnddsdeV.RaaAagaL 52 
                 +++l    +d+V + +A+ aL
  CDO68179.1 435 MMQLV---NDPVtQRTACTAL 452
                 44444...3445588888777 PP

  == domain 9  score: 1.2 bits;  conditional E-value: 0.32
     HEAT_EZ   5 raAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 r A+ aL +l++   + + +++  i+  L+ lL + + +V+  ++ga+g
  CDO68179.1 446 RTACTALDALLEIMHDVIDQYLNLIMERLVGLLDTAPIPVKSVVIGAIG 494
                 666666666554444557779999********97777788877777776 PP

  == domain 10  score: -0.8 bits;  conditional E-value: 1.3
     HEAT_EZ   8 awaLGr.laggepellqplvpeil 30 
                   a+G+ +++++++  +p+ p+++
  CDO68179.1 535 MDAVGTfAEAVGRDNFRPYFPDLM 558
                 45999*999999999******999 PP

  == domain 11  score: 1.9 bits;  conditional E-value: 0.19
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLl 34 
                 r+R+   + +G +  + ++  +p++p ++paLl
  CDO68179.1 571 RLRECSFLFFGVMSRVFGDEFAPYLPNVVPALL 603
                 5666666677777777788899**********9 PP

  == domain 12  score: 5.7 bits;  conditional E-value: 0.012
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAaga 51 
                  +l ++ ++L+d+++eV+++Aa a
  CDO68179.1 904 PLLELFYRALSDEEPEVQCNAAFA 927
                 57888889*************987 PP

  == domain 13  score: -1.4 bits;  conditional E-value: 2
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLl 34 
                 R +A+ a++r+ + +  +++  ++++lp ++
  CDO68179.1 968 RDNAVGAVARMIVKNTAAVP--LDQVLPVFI 996
                 67788888884433333333..555555555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   1.5   0.00021      0.38       8      86 ..      13     111 ..       6     113 .. 0.66
   2 !   14.9   0.7   1.4e-05     0.025       1      76 [.      42     141 ..      42     146 .. 0.78
   3 !    9.3   0.0   0.00079       1.4      33      66 ..     170     210 ..     154     221 .. 0.67
   4 ?   -3.9   0.0        10   1.8e+04      14      57 ..     274     286 ..     258     309 .. 0.62
   5 !   10.6   0.0   0.00032      0.57      11      82 ..     323     409 ..     318     415 .. 0.71
   6 ?    5.4   0.1     0.013        24       8      58 ..     398     455 ..     392     494 .. 0.72
   7 ?   -3.2   0.0       6.3   1.1e+04      65      79 ..     759     773 ..     757     794 .. 0.52
   8 !    6.5   0.0    0.0061        11      32      56 ..     905     929 ..     879     959 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
      HEAT_2   8 l.endpdpevrr.aairaLg..rignpealpaLvell.ededpavRraaaeaLgai..............g.dpealpaLkellddddddvvReaAaea 86 
                 l ++ +++ v+  aa  +L    ++np ++paL++++ e+++ avR+ aa  L +               g +++  + L el++++++ +vR ++a+ 
  CDO68179.1  13 LvQSTSNDTVQLkAATAQLNreFYKNPLCIPALTQIIaESPEQAVRQLAAVELRKRiaqkdgdlwlqletGqREQIKAKLPELVLSESSNLVRHSTARV 111
                 423456666776255566775447999999999998889999999999999997544444444444444422466778888888888888888877665 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.rignp..............ealpaLvell.ededpavRraaaeaLgaigd........pealpaLkelldddd 75 
                 ++aL q+++++p+++vr+ a+ +L  ri+ +              ++ + L el+ + ++  vR+  a+ ++ai++        p+ lp+L++ +++++
  CDO68179.1  42 IPALTQIIAESPEQAVRQLAAVELRkRIAQKdgdlwlqletgqreQIKAKLPELVlSESSNLVRHSTARVIAAIASiemplgtwPQLLPFLEQTCLSPQ 140
                 689***************99999997455445566666666666688999999986888899**********996333333448999999999998887 PP

      HEAT_2  76 d 76 
                  
  CDO68179.1 141 A 141
                 5 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00079
      HEAT_2  33 lpaLvelled.edpavRraaaeaLg......aigdpealpa 66 
                 ++++ +ll+d e+++vR + ++aLg       ++d+e+++ 
  CDO68179.1 170 FKLFEKLLQDpESAEVRITTVRALGvvaqyiDVDDKEDIKT 210
                 56777888884557899999999984443333345555544 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 10
      HEAT_2  14 pevrraairaLgrignpealpaLvellededpavRraaaeaLga 57 
                  ++r  a+ aL                                +
  CDO68179.1 274 SDLRVLALNALN-------------------------------W 286
                 445555555554...............................2 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00032
      HEAT_2  11 dpdpevrraairaLg.rignpealpaLvell....ededpavRraaaeaLg.......aigd...pealpaLkellddddddvvRea 82 
                 d+    + ++i++L+ ++ +++++paL++l+    +++ +  Rr a  aLg       ++ +   ++++p+ ++ l+d d +v++++
  CDO68179.1 323 DAPSRSALRIIDCLAtSLPPTQVFPALRQLIqqyfSSAVAGHRRGAMLALGvsvegcsEYMTplmNQVWPIIEAGLQDQDASVRKAS 409
                 55556678999999965788899*******953333455789********97555444333234699*********87655555544 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.013
      HEAT_2   8 lendpdpevrraairaLg........rignpea.......lpaLvellededpavRraaaeaLgai 58 
                 l +d d  vr+a + a          +     +       +p++ +l++  dp ++r+a++aL a+
  CDO68179.1 398 L-QDQDASVRKASCVAVSclcewleeE-----CaakhaflVPTMMQLVN--DPVTQRTACTALDAL 455
                 5.7899999998887777777543332.....33444456999999996..778888888888654 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 6.3
      HEAT_2  65 paLkellddddddvv 79 
                 p+L+e++ ++d+  v
  CDO68179.1 759 PHLLEMYESEDNKKV 773
                 344444443333222 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.0061
      HEAT_2  32 alpaLvellededpavRraaaeaLg 56 
                 +l+++ ++l+de+p+v+ +aa a g
  CDO68179.1 905 LLELFYRALSDEEPEVQCNAAFASG 929
                 5788888889999999999887766 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4   2.5e+03      12      36 ..       3      27 ..       2      32 .. 0.83
   2 !   30.2   0.2   1.7e-10   3.1e-07       1      73 [.      27      97 ..      27      98 .. 0.90
   3 ?    4.7   0.0     0.016        28      10      53 ..     255     296 ..     253     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
                TCHHHHHHHHHHCTTSHHHHHHHHH CS
       IBN_N 12 pgflsallqilanseselevRqlAa 36
                p+f++ l  +l++s+s   v++ Aa
  CDO68179.1  3 PTFVQNLHALLVQSTSNDTVQLKAA 27
                8999999999999888879997776 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 1.7e-10
                HHHHHH.HHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLk.qlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                A+ qL+ ++ k+p + +al qi+a s  +  vRqlAa+ L++ i ++  d +   +l   ++eqI+ +l +l++
  CDO68179.1 27 ATAQLNrEFYKNPLCIPALTQIIAESPEQ-AVRQLAAVELRKRIAQK--DGDLWLQLETGQREQIKAKLPELVL 97
                67789989*********************.*****************..444444**************99876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.016
                 CSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCH CS
       IBN_N  10 kqpgflsallqilanseselevRqlAalyLknlitkhWsdeeek 53 
                 + p+ + +ll+i an + e  +R+lA+  L  +++++  +++ +
  CDO68179.1 255 HIPELAEFLLRIGANRNYESDLRVLALNALNWTVQYK--KSKVQ 296
                 5788999*************************99999..55544 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11     2e+02      56     138 ..     166     211 ..      95     245 .. 0.51
   2 !   17.8   0.0   1.5e-06    0.0026      18      96 ..     386     469 ..     369     494 .. 0.78
   3 ?   -2.9   0.0       3.4   6.1e+03      59      88 ..     757     787 ..     751     814 .. 0.60
   4 !    9.1   0.0   0.00069       1.2      17      63 ..     900     946 ..     880     951 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.11
        Cnd1  56 ekgflselaklleDen.prVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslv 138
                  + f++ ++kll+D++ ++V+  ++ al  +++                                       i+ d++e  + +
  CDO68179.1 166 IQSFFKLFEKLLQDPEsAEVRITTVRALGVVAQY--------------------------------------IDVDDKEDIKTF 211
                 3335555555555544344555555555444444......................................444433333333 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.5e-06
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekg..flselaklleDen.prVvanalaalteiseksenaiynl 96 
                 l+ ++ + ++++L+D+d+ VRk   ++v+ L   l++ +  k   ++ ++ +l++D+  +r    al al ei +   ++ +nl
  CDO68179.1 386 LMNQVWPIIEAGLQDQDASVRKASCVAVSCLceWLEEECAAKHafLVPTMMQLVNDPVtQRTACTALDALLEIMHDVIDQYLNL 469
                 55666677899**********************66666666666899*********9735556667778888877633444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.4
        Cnd1  59 flselakll.eDenprVvanalaalteisek 88 
                 ++ +l+++  +++n++Vv++    l e  +k
  CDO68179.1 757 IIPHLLEMYeSEDNKKVVSSLCVGLAETIQK 787
                 5667777776444455555444444444444 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00069
        Cnd1  17 nlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflsel 63 
                 + +e+l+e  +++L+De+p V+ +aa++   Li++  v  + +  +l
  CDO68179.1 900 TWTEPLLELFYRALSDEEPEVQCNAAFASGLLIEHSDVDLSAQYLHL 946
                 56788889999**************9999999888777666655555 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.4e-06    0.0043     115     190 ..     159     235 ..     146     260 .. 0.81
   2 ?    2.2   0.1     0.045        80     148     198 ..     370     417 ..     243     428 .. 0.64
   3 ?    2.7   0.2     0.031        55     113     157 ..     378     420 ..     329     488 .. 0.58
   4 ?    1.7   0.0     0.061   1.1e+02     103     171 ..     843     909 ..     830     917 .. 0.72
   5 ?    2.2   0.0     0.044        79     217     254 ..     901     936 ..     893     944 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.4e-06
        IFRD 115 gdeseeileelkpvLkriikdssvslsakaaaieaLg.lltfvggadeeeieelmeflleifssdgqsieaadsas.k 190
                 ++  e+ +++++++++++++d + s++++ + ++aLg ++ +++ +d+e+i  +  +l  +++  gq++e+ ++a+  
  CDO68179.1 159 VEGFETHIQSFFKLFEKLLQDPE-SAEVRITTVRALGvVAQYIDVDDKEDIKTFQSLLPAMINIIGQTVESGNEAGaR 235
                 4556778999*************.*************66678899999****99999999999999999998888744 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.045
        IFRD 148 eaLglltfvggadeeeieelmeflleifssdgqsieaadsaskalvtaals 198
                  aLg  + v g + e ++ lm+  + i++  +q ++a++ +++ + +++l 
  CDO68179.1 370 LALG--VSVEGCS-EYMTPLMNQVWPIIEAGLQDQDASVRKASCVAVSCLC 417
                 2222..2233333.3344444444444444444443333322223333333 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.031
        IFRD 113 gagdeseeileelkpvLkriikdssvslsakaaaieaLglltfvg 157
                 g+++    ++++++p++++ ++d++  +s+++a + a + l+   
  CDO68179.1 378 GCSEYMTPLMNQVWPIIEAGLQDQD--ASVRKASCVAVSCLCEWL 420
                 2333333366666666666666666..445555555555444333 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.061
        IFRD 103 kalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLg.lltfvggadeeeieelmefl 171
                  ++a+l+  lg+  e  + +++++p++++++k+++ sls ++ ai +L+ ++  +  a  + +e l+e++
  CDO68179.1 843 DLVAALASALGP--EFASGFQKFFPLISKYYKKNR-SLSDRSCAIGCLSeIIGGMKNAISTWTEPLLELF 909
                 556666666664..445689***************.************8555444444445555555544 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.044
        IFRD 217 eedleealealvelLdssdvevriAAGeaiALlfElsr 254
                 ++  e++le +   L++++ ev+  A  a +Ll E s+
  CDO68179.1 901 WT--EPLLELFYRALSDEEPEVQCNAAFASGLLIEHSD 936
                 44..8999***************************875 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.63   1.1e+03     117     156 ..      24      61 ..       7      64 .. 0.78
   2 ?    0.9   0.0      0.19   3.4e+02      56     114 ..     138     196 ..     127     246 .. 0.82
   3 !   11.6   0.0   9.4e-05      0.17      41     124 ..     376     469 ..     320     479 .. 0.57
   4 ?   -1.7   0.0       1.1     2e+03      67     118 ..     843     894 ..     837     898 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.63
        RIX1 117 ltrgkptltREiltpnlpkfitallqlleeeletvleals 156
                 l +    l RE+     p +i+al q++ e++e++++ l+
  CDO68179.1  24 LKAATAQLNREFYKN--PLCIPALTQIIAESPEQAVRQLA 61 
                 555667788999998..9999*******999999998876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.19
        RIX1  56 skspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdppavlelaistlsri 114
                 s ++  r +Gv ++ ++ e+  e + ++ +++++   ++L+ p++  v  +++++l  +
  CDO68179.1 138 SPQATHREVGVYILFTILENIVEGFETHIQSFFKLFEKLLQDPESAEVRITTVRALGVV 196
                 55677888889888888888889999999999999999999998877777777776555 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 9.4e-05
        RIX1  41 e.........lvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdppavlelaistlsrift.ltrgkptl 124
                           l+++    i + lq+++++ r a ++ + +++e   ee++++ + ++  ++++++ p  + +  +a+++l  i++  + ++ +l
  CDO68179.1 376 VegcseymtpLMNQVWPIIEAGLQDQDASVRKASCVAVSCLCEWLEEECAAKHAFLVPTMMQLVNDPVTQRTACTALDALLEIMHdVIDQYLNL 469
                 0333333333444444455556667777777777777777777666666666667777777777777666666666666666666555555555 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.1
        RIX1  67 cLakvtveesgeellssgstWlrallsiLekpdppavlelaistlsriftlt 118
                  L+ +++++ g e++s  ++++  + +  +k+ + +  ++ai +ls i+  +
  CDO68179.1 843 DLVAALASALGPEFASGFQKFFPLISKYYKKNRSLSDRSCAIGCLSEIIGGM 894
                 5888999999999999999999999999999999999*********998766 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0        10   1.8e+04      67      93 ..       7      33 ..       5      35 .. 0.81
   2 ?   -1.0   0.0       1.5   2.7e+03      51      81 ..     151     181 ..     139     227 .. 0.69
   3 !   11.6   0.0   0.00018      0.33       2      95 ..     364     456 ..     363     458 .. 0.91
   4 ?    2.2   0.0      0.16   2.9e+02      10      75 ..     413     476 ..     407     490 .. 0.66
   5 ?   -2.3   0.0         4   7.2e+03      15      42 ..     744     771 ..     741     777 .. 0.83
   6 ?    1.2   0.0      0.33   5.9e+02      13      89 ..     848     925 ..     842     933 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 10
  Vac14_Fab1_bd 67 neifdalvklvaDsdesvksgaelldr 93
                   ++++  lv+ ++    ++k ++++l+r
     CDO68179.1  7 QNLHALLVQSTSNDTVQLKAATAQLNR 33
                   567778889999999999999999998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
  Vac14_Fab1_bd  51 lyniakvakgevlkllneifdalvklvaDsd 81 
                    l+ i   + + + +++++ f+ + kl+ D +
     CDO68179.1 151 LFTILENIVEGFETHIQSFFKLFEKLLQDPE 181
                    4444444444445555555666666665554 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00018
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgaelldrll 95 
                    +r+g++++L     + ++ +++ ++++ +++ + ++D+d+ vR  +c ++  ++  +++e+  +   +  ++++lv D  +  +++   ld ll
     CDO68179.1 364 HRRGAMLALGVSVEGCSEYMTPLMNQVWPIIEAGLQDQDASVRKASCVAVSCLCEWLEEECAAKHAFLVPTMMQLVNDPVT-QRTACTALDALL 456
                    6999*****9999999999****************************************9999999999999999999954.588888888877 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.16
  Vac14_Fab1_bd  10 LaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvk 75 
                    + ++   le++ +     +v+++++ ++D  ++   +ac +l  +  ++++ + ++ln i + lv 
     CDO68179.1 413 VSCLCEWLEEECAAKHAFLVPTMMQLVNDPVTQ--RTACTALDALLEIMHDVIDQYLNLIMERLVG 476
                    555555677788888889999*******98644..2455555555555555555566666555554 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4
  Vac14_Fab1_bd  15 ialekkikeyleeivkpvlkcfsDkdsr 42 
                    + l+ ++ke + +i++ +l++ + +d++
     CDO68179.1 744 VPLDPRVKELIGHIIPHLLEMYESEDNK 771
                    5677889999999*****9999988876 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.33
  Vac14_Fab1_bd  13 vaialekkikeyleeivkpvlkcfsDk.dsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                    +a al+ + ++ ++++ + + k+ + + +   R  a+ +l  i+  +k+++ +  + +++ +++ ++D++++v+  a+
     CDO68179.1 848 LASALGPEFASGFQKFFPLISKYYKKNrSLSDRSCAIGCLSEIIGGMKNAISTWTEPLLELFYRALSDEEPEVQCNAA 925
                    555555555556666665555554433033456677777777777888888888888888888888888888887665 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.34     6e+02      36      52 ..      43      59 ..      30      62 .. 0.75
   2 ?    1.3   0.1      0.16   2.8e+02       8      19 ..     344     355 ..     339     356 .. 0.82
   3 ?    7.2   0.0    0.0023       4.1       2      31 ..    1004    1033 ..    1004    1035 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.34
  XPC-binding 36 PqllqlIqqnqeeFlql 52
                 P+l q+I++ +e+ ++ 
   CDO68179.1 43 PALTQIIAESPEQAVRQ 59
                 77888888888775554 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
  XPC-binding   8 pqFqqlRqlvqq 19 
                  + F +lRql+qq
   CDO68179.1 344 QVFPALRQLIQQ 355
                  568999999998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0023
  XPC-binding    2 efLrnnpqFqqlRqlvqqnPqlLqplLqql 31  
                   +fL n p F ++  l +++P++L p L +l
   CDO68179.1 1004 DFLENRPVFRAIFHLFKTQPAVLAPYLDKL 1033
                   69**********************999876 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.8     5e+03      13      33 ..      41      62 ..      41      63 .. 0.80
   2 ?   -3.4   0.0       6.8   1.2e+04      19      37 ..     175     194 ..     173     195 .. 0.85
   3 ?   -3.8   0.0         9   1.6e+04      14      22 ..     346     354 ..     345     361 .. 0.75
   4 ?    1.6   0.2      0.18   3.2e+02      21      39 ..     398     416 ..     398     418 .. 0.87
   5 ?    0.7   0.0      0.35   6.2e+02      22      36 ..     437     452 ..     432     452 .. 0.81
   6 ?    0.1   0.0      0.53   9.6e+02      14      37 ..     471     494 ..     468     497 .. 0.90
   7 ?   -3.4   0.0       6.4   1.2e+04      12      19 ..     597     604 ..     596     607 .. 0.86
   8 ?    3.0   0.0     0.066   1.2e+02      14      33 ..     906     925 ..     900     925 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
                HHHHHHHHTT.TSSHHHHHHHH CS
         Arm 13 avppLvrLLs.sedeevqeeAa 33
                ++p+L + +  s+ + v++ Aa
  CDO68179.1 41 CIPALTQIIAeSPEQAVRQLAA 62
                799**99999888888876655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.8
                 HHTT.TSSHHHHHHHHHHHH CS
         Arm  19 rLLs.sedeevqeeAawALs 37 
                 +LL+  e+ ev+   ++AL+
  CDO68179.1 175 KLLQdPESAEVRITTVRALG 194
                 68898899999999999986 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 9
                 HHHHHHHTT CS
         Arm  14 vppLvrLLs 22 
                  p+L +L++
  CDO68179.1 346 FPALRQLIQ 354
                 589999987 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.18
                 TTTSSHHHHHHHHHHHHHH CS
         Arm  21 LssedeevqeeAawALsNL 39 
                 L+++d +v+++++ A+s L
  CDO68179.1 398 LQDQDASVRKASCVAVSCL 416
                 7899***********9855 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.35
                 T.TSSHHHHHHHHHHH CS
         Arm  22 s.sedeevqeeAawAL 36 
                 +   d+ +q+ A++AL
  CDO68179.1 437 QlVNDPVTQRTACTAL 452
                 5567999********8 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.53
                 HHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAawALs 37 
                 +++Lv LL++    v+ ++ +A++
  CDO68179.1 471 MERLVGLLDTAPIPVKSVVIGAIG 494
                 789*************99999997 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 6.4
                 THHHHHHH CS
         Arm  12 GavppLvr 19 
                 ++vp+L++
  CDO68179.1 597 NVVPALLQ 604
                 89****97 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.066
                 HHHHHHHTTTSSHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAa 33 
                 ++ + r Ls+e +evq++Aa
  CDO68179.1 906 LELFYRALSDEEPEVQCNAA 925
                 556667788**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 6908.29
//
Query:       CDO68180.1  [L=162]
Description: hypothetical protein BN946_scf184938.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.036   14.2   0.0    1.2  1  ASL_C     Adenylosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> ASL_C  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     2e-06     0.036      53      89 ..     102     138 ..      83     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-06
                 GGGHHHHHHHHHHTT-TTHHHHHHHHHTTS---HHHH CS
       ASL_C  53 evlaEaiqtvlrregiekpYeklkeltrgkkitkesl 89 
                 + +aEa+q +l+r   +kpYe   ++  g++ t ++l
  CDO68180.1 102 TAVAEAVQSLLQRAMRAKPYESTYAILPGSQYTIQNL 138
                 569*******************999998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1093.72
//
Query:       CDO68181.1  [L=353]
Description: hypothetical protein BN946_scf184938.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-14   54.0   0.0    1.2e-05   24.4   0.0    3.1  3  Phosducin    Phosducin
  ------ inclusion threshold ------
      0.039   14.9   0.3       0.08   13.9   0.3    1.4  1  ERp29        Endoplasmic reticulum protein ERp29, C-terminal 


Domain annotation for each model (and alignments):
>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.3   5.3e-05      0.48      21      71 ..      74     124 ..      53     133 .. 0.83
   2 !   24.4   0.0   1.3e-09   1.2e-05     120     192 ..     141     211 ..     136     253 .. 0.86
   3 !   16.4   0.0   3.8e-07    0.0034     193     234 ..     276     312 ..     271     324 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.3e-05
                 -SSHHHHHHHHHHHHH.HH--------------------.........--- CS
   Phosducin  21 vntgpkgvindwrkfkqlesedreevarekkrllkklssscrshldeeees 71 
                  +tg kgvi d      l   +r e  +e +r + k s   ++  +ee+e+
  CDO68181.1  74 GRTGVKGVIRDRAEAESLARAKRAEEIKELNRAMEKASLGGKTWAEEEKER 124
                 58*************************************999998888775 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.3e-09
                 ------SEEE--SHHHHHHHHHSS-TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-TTSEEEEEEHHHH--TT CS
   Phosducin 120 kgprfkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvigasd 192
                  g rf+++ e+     f++ ++ +     +vvhiy+  ++ + +++ +l  la  yp  kf + +a +ig ++
  CDO68181.1 141 RGGRFGHLREVGV-RSFVQAVEEDP-DVWVVVHIYDPSLDRCASVDETLSRLARSYPSTKFLRARAGAIGFAS 211
                 6888888888854.68999998665.56799**************************************9544 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 3.8e-07
                 SS-TTT-SEEEEEETTEEEEEETTGGGGS-TT--HHHHHHHH CS
   Phosducin 193 rfsrdvlpallvykagellsnfvrvtdqlaedffavdleafl 234
                    +dvlp+llvy++g+l+  +vrv  +         le fl
  CDO68181.1 276 EVDTDVLPTLLVYRGGDLVHSWVRVDWEAK-----QGLEEFL 312
                 56789*******************953221.....2344444 PP

>> ERp29  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   8.9e-06      0.08      30      74 ..      86     130 ..      78     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.9e-06
       ERp29  30 kaaeklksekekkaaeyYvkvmekiaekgeeyvekElkRLekllk 74 
                 ++ae+l+++k +++ +   ++mek++  g+ ++e+E++RL++l +
  CDO68181.1  86 AEAESLARAKRAEEIKELNRAMEKASLGGKTWAEEEKERLAELRR 130
                 5677777788899999999*********************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2451.59
//
Query:       CDO68182.1  [L=159]
Description: hypothetical protein BN946_scf184938.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.027   14.4   0.4      0.096   12.6   0.0    2.1  3  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.27   4.8e+03      32      40 ..      22      30 ..      17      31 .. 0.77
   2 ?   -2.2   0.0      0.22     4e+03      30      43 ..     112     124 ..     109     124 .. 0.77
   3 ?   12.6   0.0   5.3e-06     0.096      18      35 ..     133     151 ..     130     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.27
                   EE--SSHHH CS
  Ribosomal_L30 32 vvklntpsi 40
                    ++l+tp i
     CDO68182.1 22 RIQLDTPVI 30
                   689999988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.22
                    EEEE--SSHHHHHH CS
  Ribosomal_L30  30 gtvvklntpsirGm 43 
                    ++ vk+ t +++ m
     CDO68182.1 112 ASRVKPHTKTYA-M 124
                    678999999887.6 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 5.3e-06
                    HHHHHTT-SSTT.EEEE-- CS
  Ribosomal_L30  18 ktLqlLgLrkin.gtvvkl 35 
                    + L lLgLr+i+  ++v +
     CDO68182.1 133 QNLALLGLRQIHaNVFVAE 151
                    5699************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1158.26
//
Query:       CDO68183.1  [L=149]
Description: hypothetical protein BN946_scf184938.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   13.7   0.3      0.062   13.2   0.3    1.3  1  MF_alpha_N  Mating factor alpha precursor N-terminus


Domain annotation for each model (and alignments):
>> MF_alpha_N  Mating factor alpha precursor N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   3.5e-06     0.062       1      33 [.       1      32 [.       1      52 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-06
  MF_alpha_N  1 Mkfssilsavallassalaapvstedeeeeaae 33
                M+f+ i++++a la++++a+pvs++++   a  
  CDO68183.1  1 MQFTAIFTVIATLAAAVTASPVSERTS-GIASG 32
                9**********************9875.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1202.64
//
Query:       CDO68184.1  [L=366]
Description: hypothetical protein BN946_scf184938.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   16.6   1.3      0.038   13.3   0.5    2.0  2  DUF4407    Domain of unknown function (DUF4407)
     0.0086   16.1   1.2       0.33   11.0   0.1    2.9  3  FlxA       FlxA-like protein
  ------ inclusion threshold ------
      0.015   15.5   7.4       0.42   10.8   5.2    2.3  2  CENP-Q     CENP-Q, a CENPA-CAD centromere complex subunit
      0.023   15.2   3.6      0.023   15.2   3.6    2.1  2  APG6_N     Apg6 coiled-coil region
      0.082   11.4   2.0       0.13   10.8   2.0    1.3  1  FUSC       Fusaric acid resistance protein family
       0.13   11.9   0.7       0.21   11.2   0.7    1.3  1  Phage_GPO  Phage capsid scaffolding protein (GPO) serine pept
        3.3    7.8   8.1        3.1    7.9   1.6    3.0  2  DUF1192    Protein of unknown function (DUF1192)
        3.4    7.5   6.2       0.33   10.8   0.8    2.0  3  CdvA       CdvA-like coiled-coil domain


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.5   1.7e-05     0.038     128     236 ..      28     145 ..      20     174 .. 0.71
   2 ?    1.9   0.0     0.051   1.1e+02     126     163 ..     300     337 ..     292     361 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
     DUF4407 128 aaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkakld............atar 211
                  ++++++++ le+++++ +a+++    ++++l+a +  e   ++   g      +G  +   + +a ld+++++  +l+++ld             +++
  CDO68184.1  28 SKTFQSRIRGLEKDVDQFSAALNDFIIERTELKAMLSHEHRKDSvveG------NGHADGSSRITALLDQITKDQRALREQLDavergrthrekeLESE 120
                 456899999999999999999999999999999999999887654222......444555667888999999999999999888778855555555555 PP

     DUF4407 212 laalraelaeleaerakeraasqaa 236
                 +a+lr+ l + ++e+++  +  +++
  CDO68184.1 121 IATLRQALLDFQQEARRHSSPRREE 145
                 5555555555555555555555555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.051
     DUF4407 126 qlaaaltaelaeleaqiaalqaeidaaearldalraea 163
                 +++++ +a++a +e++i + q++++a+ea l+ lr  a
  CDO68184.1 300 RMESTTEARIALIEREIIDTQRQLEAKEALLAGLRGPA 337
                 45667899999****************99998877655 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.49   1.1e+03       9      35 ..      25      51 ..      21      62 .. 0.81
   2 !   11.0   0.1   0.00015      0.33      10      77 ..      80     140 ..      70     152 .. 0.57
   3 ?    1.7   0.1      0.11   2.5e+02      11      34 ..     301     324 ..     295     329 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.49
        FlxA  9 sssssgsasqiasLqkQiknlqkqLke 35
                s  s++ +s+i+ L+k +++ +  L++
  CDO68184.1 25 SRFSKTFQSRIRGLEKDVDQFSAALND 51
                567888899999999999998888876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
        FlxA  10 ssssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaq 77 
                   ss +++ + +++k +  l +qL+ +             ++++++++I  l++ +   qq++++  +
  CDO68184.1  80 DGSSRITALLDQITKDQRALREQLDAVERGR-------THREKELESEIATLRQALLDFQQEARRHSS 140
                 3344444455555555555666666666663.......355567777777777777777776665544 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.11
        FlxA  11 sssgsasqiasLqkQiknlqkqLk 34 
                 ++s+++++ia ++++i + q qL+
  CDO68184.1 301 MESTTEARIALIEREIIDTQRQLE 324
                 455666666666666666666664 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.2   0.00019      0.42      28     134 ..      86     198 ..      57     208 .. 0.70
   2 ?    4.5   0.0     0.016        36      36      72 ..     297     333 ..     291     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
      CENP-Q  28 eklldekaaleaqLspelhslelLeaeieke.eralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassdevlgea......sgt 119
                 ++lld+++  ++ L+ +l+++e  + ++eke e + +   +aL +++++a+++ + r+e++ ++  ++++ ++ +  +  +++ + + +a      +  
  CDO68184.1  86 TALLDQITKDQRALREQLDAVERGRTHREKElESEIATLRQALLDFQQEARRHSSPRREERSSTPGVVPSGNTLHAAKSLSPQISPTLTAndthalH-V 183
                 56666666677777777777777777776543556677788999************99998998888887766666666666665555554444432.2 PP

      CENP-Q 120 vfsdlepeldeellp 134
                 ++++++pe d e+++
  CDO68184.1 184 EQTSDQPEADIETRR 198
                 333355566666665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
      CENP-Q  36 aleaqLspelhslelLeaeiekeeralerdyeaLreL 72 
                  l +  s+++  ++l e+ei   +r le  ++ L+ L
  CDO68184.1 297 DLTRMESTTEARIALIEREIIDTQRQLEAKEALLAGL 333
                 57888999999********************999877 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   3.6     1e-05     0.023      14     103 ..      31     140 ..      26     148 .. 0.71
   2 ?   -0.7   0.5      0.83   1.8e+03      62      89 ..     301     328 ..     292     334 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeek................qdeeleeleeeleklekeeeelleeLkeleker....eeleaelaaleeele 92 
                 ++++++ +ek+ d++++ l+ +  e++e ++                + +   ++   l+++ k++++l e+L+++e+ r    +ele+e+a+l++ l 
  CDO68184.1  31 FQSRIRGLEKDVDQFSAALNDFIIERTELKAmlshehrkdsvvegngHADGSSRITALLDQITKDQRALREQLDAVERGRthreKELESEIATLRQALL 129
                 6777888888888888888887766555544677777767777778777777888888*******************8761111566666666666666 PP

      APG6_N  93 aleeeeerfwr 103
                 + ++e +r+ +
  CDO68184.1 130 DFQQEARRHSS 140
                 66666666544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.83
      APG6_N  62 eeeelleeLkelekereeleaelaalee 89 
                  e++ ++ ++ +e+e  + +++l+a e+
  CDO68184.1 301 MESTTEARIALIEREIIDTQRQLEAKEA 328
                 4555555555555555555555555554 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   5.7e-05      0.13     256     346 ..      85     161 ..      30     166 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
        FUSC 256 laallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaa.arraerlarhrdhlaa 346
                 +             a+ ++++++ +alr++l+a++r +    +++ +l ++ a+l ++l++ +++ r++++++++ +   ++++++ ++l+a
  CDO68184.1  85 IT------------ALLDQITKDQRALREQLDAVERGRT---HREKELESEIATLRQALLDFQQEARRHSSPRREeRSSTPGVVPSGNTLHA 161
                 33............3445556688899999999999888...******************************99943333346666666555 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   9.1e-05      0.21     179     263 ..      57     151 ..      32     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.1e-05
   Phage_GPO 179 erikallskkkksd........darfadveeavelvAeevkelsekveall.aleaelaalkkeveklkaeleaLkekLsktda.kekqrpeatG 263
                 +++ka+ls+++++d         +  + ++  ++++ + +++l+e+++a++   +++ ++l++e+++l+++l +++++  +  + ++++r+  +G
  CDO68184.1  57 TELKAMLSHEHRKDsvvegnghADGSSRITALLDQITKDQRALREQLDAVErGRTHREKELESEIATLRQALLDFQQEARRHSSpRREERSSTPG 151
                 57999***9999995555544437788999999***************988777888999*****************999998888889988888 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6     0.083   1.9e+02      30      43 ..     115     128 ..     111     137 .. 0.82
   2 ?    7.9   1.6    0.0014       3.1      26      49 ..     306     329 ..     291     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.083
     DUF1192  30 alLeaEIaRleaai 43 
                 ++Le+EIa l++a+
  CDO68184.1 115 KELESEIATLRQAL 128
                 68999**9999987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
     DUF1192  26 eerIalLeaEIaRleaaiakkkas 49 
                 e+rIal e EI  +++++++k+a 
  CDO68184.1 306 EARIALIEREIIDTQRQLEAKEAL 329
                 79*******************996 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   2.8e+03      46      65 ..      32      51 ..      27      65 .. 0.59
   2 ?   10.8   0.8   0.00015      0.33      19      67 ..      84     132 ..      79     135 .. 0.90
   3 ?   -4.0   0.1       5.4   1.2e+04      47      61 ..     307     321 ..     299     328 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
        CdvA 46 kkrlkeledqikslekalan 65
                ++r++ le+ +++ + al +
  CDO68184.1 32 QSRIRGLEKDVDQFSAALND 51
                55666666666665555544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00015
        CdvA  19 tyeeikekleealkklkekakelkeklkkrlkeledqikslekalanlk 67 
                 +   +  ++++  ++l+e+ +++    ++r kele++i++l +al++++
  CDO68184.1  84 RITALLDQITKDQRALREQLDAVERGRTHREKELESEIATLRQALLDFQ 132
                 5566778999999********************************9986 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5.4
        CdvA  47 krlkeledqikslek 61 
                 +r++ +e +i  +++
  CDO68184.1 307 ARIALIEREIIDTQR 321
                 444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2535.78
//
Query:       CDO68185.1  [L=254]
Description: hypothetical protein BN946_scf184938.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-16   60.6   5.3    1.8e-16   59.8   5.3    1.4  1  zf-C2HC5     Putative zinc finger motif, C2HC5-type
  ------ inclusion threshold ------
      0.021   14.2   1.6       0.71    9.4   0.2    2.7  2  zf-ribbon_3  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   5.3     2e-20   1.8e-16       3      53 ..      69     119 ..      67     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2e-20
    zf-C2HC5   3 kCnCqatrHpLleaapnClnCGkiiCakeglskpCsfCgspllsseerqel 53 
                  C+Cqa+ HpL++++p+C +CG+i+C+ + ++  C++Cg+ ll++++ ++l
  CDO68185.1  69 GCFCQARLHPLSPYTPICRACGLILCELNLPNFACPHCGAGLLTTATLDSL 119
                 6*******************************************9988777 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1    0.0072        64      11      24 ..      78      91 ..      77      93 .. 0.79
   2 ?    9.4   0.2   7.9e-05      0.71       4      11 ..     102     110 ..      99     113 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0072
  zf-ribbon_3 11 plssddnvCpyCGt 24
                 pls+  ++C  CG 
   CDO68185.1 78 PLSPYTPICRACGL 91
                 66777789*****6 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 7.9e-05
  zf-ribbon_3   4 rCPnCGa.p 11 
                   CP+CGa +
   CDO68185.1 102 ACPHCGAgL 110
                  466666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1677.32
//
Query:       CDO68186.1  [L=233]
Description: hypothetical protein BN946_scf184938.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31    9.6   2.5       0.36    9.3   2.5    1.2  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.5     2e-05      0.36     238     371 ..      17     161 ..       5     231 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 2e-05
    Macoilin 238 nhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvksks.sssssssn....... 328
                 + ++ + +s+  lp+  +r++ +  + s s +++++e+++++++++qe+ +++    + + +++ ++++++ l +++++ +    ++s  s+       
  CDO68186.1  17 SPQRHHISSQSPLPDTASRDHLQPRSPSPSPQQQHYEQQHQHQHHQQEHPFHAP---PPPQHSNGTPTQHHYLPQQQHAYEDYpRPDSRLSHsrlhppp 112
                 444555567788888888888666666656665555544433344444444432...222222333444444444444433330222222222244445 PP

    Macoilin 329 ......knskkasagsagssnssskkhsessksvtsssssknskkqklp 371
                       ++ + ++ + +  ++ s k++++ + +   s+s++ + +q+ p
  CDO68186.1 113 satpgrHTPSANTEEVTPPASPSHKRYKQDNPNGEASASANGHTQQSHP 161
                 5555532222222222333333444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 1499.11
//
Query:       CDO68187.1  [L=425]
Description: hypothetical protein BN946_scf184938.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-08   34.2   5.7    2.3e-08   33.5   5.7    1.4  1  GATA             GATA zinc finger
  ------ inclusion threshold ------
      0.015   15.3   1.6      0.042   13.9   1.6    1.7  1  ArfGap           Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   5.7   2.6e-12   2.3e-08       1      34 [.     159     193 ..     159     195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.6e-12
        GATA   1 CsnCgttkTplWRrg..pdgnksLCnaCGlyykkkg 34 
                 C nC+tt+T+ WRr     g+  LCn CGl+ + + 
  CDO68187.1 159 CYNCRTTDTSTWRRSslTPGKV-LCNKCGLFERTHS 193
                 ***************9888999.**********996 PP

>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.6   4.7e-06     0.042      12      98 ..     155     258 ..     146     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.7e-06
                 CCCB-TTT.-SBS--E..EETTTTEEE-HHHHHHHCCS...............TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-T CS
      ArfGap  12 enkvCaDC.gakeptW..aslnlgvflCieCsgvHrsl..............gvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekrsk 93 
                   ++C +C ++  +tW   sl+ g +lC +C  + r++               v +++ +  ++d+ +++  + l++   ++a++  +++ ++++++++
  CDO68187.1 155 VRRKCYNCrTTDTSTWrrSSLTPGKVLCNKCGLFERTHsrprpeqfppkrgpVVPVNQFKQHRNDNQQNSPSHALAQQQAAHAQQQQQQQQQQQQQQQQ 253
                 4579****5556679944577889**************9999999999998778889999999999888888888888888888777777766666644 PP

                 TCGHH CS
      ArfGap  94 ssske 98 
                 +++++
  CDO68187.1 254 QQQQQ 258
                 44433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4116  (0.229572); expected 358.6 (0.02)
Passed bias filter:                     1465  (0.0817112); expected 358.6 (0.02)
Passed Vit filter:                       368  (0.0205254); expected 17.9 (0.001)
Passed Fwd filter:                       102  (0.00568911); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.52u 0.45s 00:00:01.97 Elapsed: 00:00:00.59
# Mc/sec: 2152.29
//
Query:       CDO68188.1  [L=319]
Description: Carbohydrate Esterase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-06   26.9   0.0    9.7e-06   25.7   0.0    1.6  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
    0.00017   22.1   0.1    0.00067   20.1   0.0    1.9  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.1e-09   9.7e-06       1     198 [.      32     301 ..      32     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.1e-09
                  EEEEESHHHH.......TT.....THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCH.......ECTTTECHHHH..HCTTS....EE CS
                  xxxxxxxxxx.......xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx..xxxxx....xx RF
  Lipase_GDSL   1 ivafGDSltd.......Gd.....gaatlntiqlktpknlnefdlaldrianignkgasdnelqqll.......nkyplkseqlk..alhpd....lv 73 
                  +v+fGDS td       G      +     +               +++ +  +  ga   ++ +++        + pl++  +   +lh d    ++
   CDO68188.1  32 LVTFGDSYTDvdghadgGIvwpvyA-----AQDG------------HFNLFPFAKSGATCSNKLTNRpfpsvfeSQLPLFFAEKAngSLHLDpeetIY 112
                  589*****99555544433333332.....2222............22333333333333333333334444443333444333211355556699** PP

                  EEE--CTCC..-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH...................CTCCCCHCCHHHHHHHHHHH CS
                  xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  74 iislGtNDs..nlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgp...................qeekdakklgekgnefvgey 150
                  ++++GtND+         ++ + ++ + ++   + +k  +++ga+++i  ++ p++ +                    +           ++ f++e 
   CDO68188.1 113 TLWIGTNDVgvGALLTGSQTPGVSVVDTVSCAINWVKVMYASGARNFIFQNMIPLEHTIlysadsypnrywtaprnttE-----------WSVFMTEL 199
                  *********88666777788999999999999999*****************9999888999*****555555555554...........55555555 PP

                  HHHHHHHHH...........HCTEEEECHHHHHHHTHCCGCHCH.............................................TSSSB-HHH CS
                  xxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxx.............................................xxxxxxxxx RF
  Lipase_GDSL 151 nqrlndlae...........kdgfavvDlydelqglsgieqlka.............................................DglHpsekg 192
                   +  n++ae           ++++ ++D ++ ++++  i +++                                              D lHpse++
   CDO68188.1 200 TKSGNAIAElmlkdlvpqlhGAHLGLFDSHSLFTDM--INHPQVylngtaplnvtgavhacvfqvnestsdpgvctdatgtdrdsflwfDELHPSEQA 295
                  55555555555555555555****************..77777788999**********************************999999999****** PP

                  HHHHHH CS
                  xxxxxx RF
  Lipase_GDSL 193 yeklae 198
                   + +++
   CDO68188.1 296 DRVIGK 301
                  998876 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.5e-08   0.00067       2      84 ..      35     130 ..      34     220 .. 0.72
   2 ?   -0.3   0.0      0.14   1.3e+03     158     176 ..     278     295 ..     250     298 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.5e-08
                    EESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE....EEHCCH-H..........HHHHHHHH..CTGGG-T.............SEEEEE-- CS
  Lipase_GDSL_2   2 lGDSiTaGygadgggrsypaylarllaarlgldvvnn...lgvsGatt........allrllerlr..dllrlkp.............dlvtiliG 71 
                    +GDS+T+     g ++++  + + + a+ ++     n   ++ sGat         +   ++ +l+        +              + t++iG
     CDO68188.1  35 FGDSYTDVD---GHADGGIVW-PVYAAQDGHF----NlfpFAKSGATCsnkltnrpFPSVFESQLPlfF-----AekangslhldpeeTIYTLWIG 117
                    9******43...566667777.7777777733....3356******88566655553333333333331.....13334556666699******** PP

                    CCCCCTT--HHHH CS
  Lipase_GDSL_2  72 tNDlgrgvpaaaa 84 
                    tND+g g+  +  
     CDO68188.1 118 TNDVGVGALLTGS 130
                    ***8766655544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
                    CCCCGGBBTTS.SSB-HHH CS
  Lipase_GDSL_2 158 gerladlladdglHPnaaG 176
                    ++r + l+ d  lHP+++ 
     CDO68188.1 278 TDRDSFLWFDE-LHPSEQA 295
                    23334455565.****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2017.28
//
Query:       CDO68189.1  [L=133]
Description: hypothetical protein BN946_scf184938.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 982.66
//
Query:       CDO68190.1  [L=212]
Description: hypothetical protein BN946_scf184938.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-21   74.9   0.0    8.4e-21   74.1   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    4.1e-16   59.2   0.0    7.2e-16   58.4   0.0    1.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    5.2e-12   45.9   0.0      9e-12   45.1   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    3.5e-11   43.2   0.0    4.7e-11   42.7   0.0    1.2  1  GST_C     Glutathione S-transferase, C-terminal domain
    2.1e-05   24.5   0.0    3.5e-05   23.7   0.0    1.3  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    2.2e-05   24.5   0.0    3.6e-05   23.9   0.0    1.2  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   2.8e-24   8.4e-21       1      75 [.       1      75 [.       1      76 [. 0.97

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 2.8e-24
                EEEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  1 avltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYia 75
                +vl+ ++++ s  ++r+r++l+++gv+ye v +df++ge+kspe++ ++p+g+vP+  d+g+kl ESraI++Y+a
  CDO68190.1  1 MVLKIVGNPVSTCTNRVRITLEELGVPYELVAIDFSKGEHKSPEFTAIQPFGQVPYIDDDGFKLYESRAIARYVA 75
                678999999999*************************************************************97 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   2.4e-19   7.2e-16       5      73 ..       9      80 ..       6      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 2.4e-19
                TTSHHHHHHHHHHHHHT--EEEE---..TTTT.HHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-G CS
     GST_N_3  5 paSpyarrvrlaLnekglpvevvevt..pgeh.deellaknplgkvPvLeddgealtdSlaIidyLeelypg 73
                p S  ++rvr++L+e+g+p+e+v ++  +geh ++e+ a+ p g+vP++ ddg +l++S+aI++y+  +y+g
  CDO68190.1  9 PVSTCTNRVRITLEELGVPYELVAIDfsKGEHkSPEFTAIQPFGQVPYIDDDGFKLYESRAIARYVALKYGG 80
                78999*****************99966688888********************************9998875 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0     3e-15     9e-12       2      67 ..      11      74 ..      10      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3e-15
                -HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryl 67
                + +++Rv+i+l+++g+++++  + +  kg++ks+ef ++ p+g+VP + d dg  ++eS++I+ry 
  CDO68190.1 11 STCTNRVRITLEELGVPYELVAI-DFSKGEHKSPEFTAIQPFGQVPYIDD-DGFKLYESRAIARYV 74
                67899**************8776.567*********************98.9************97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.6e-14   4.7e-11      18      93 .]     128     204 ..      93     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.6e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHHHHHHTSH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawlerimarp 93 
                 ++++ +v++ ++ +   l a++  l k++yl+Gd+ltlAD+ ++p    l++ g++ + +  +pn+++w++ i++r+
  CDO68190.1 128 KTNQDAVAQMKTTLEGKLGAYDVILGKSKYLAGDELTLADLFHIPYGALLEKQGIDYLvSGRWPNVTRWWKDISSRE 204
                 467888999999**************************************************************996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.2e-08   3.5e-05       2      66 ..     132     196 ..     131     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.2e-08
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraW 66 
                  av++++++l+ +l a + +L++s +l+Gd++tlaD + +p    l+  g +     ++pn+ +W
  CDO68190.1 132 DAVAQMKTTLEGKLGAYDVILGKSKYLAGDELTLADLFHIPYGALLEKQGIDYLVSGRWPNVTRW 196
                 68999************************************999999988777778899999999 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.2e-08   3.6e-05       7      91 ..     120     205 ..     116     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.2e-08
                 HHCCCCSHCHHHHHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH...TCC..CC-HHHHHHHHHHHTSHH CS
     GST_C_3   7 iakllydqkeeaekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea...eal..kkfpklkalyervearpk 91 
                 i+k++y  k++ + + + ++++l+  l++++ +l   +++yl+gd+lT+ADl+   +   le++     l   ++p+++++++ +++r++
  CDO68190.1 120 IFKVAYGGKTN-QDAVAQMKTTLEGKLGAYDVILG--KSKYLAGDELTLADLFHIPYGALLEKQgidY-LvsGRWPNVTRWWKDISSRES 205
                 66666622333.566777899**************..999************9998888888886641.355899**********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1648.85
//
Query:       CDO68191.1  [L=450]
Description: hypothetical protein BN946_scf184938.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   14.4   0.4        1.2    8.3   0.0    2.1  2  Frigida   Frigida-like protein
       0.02   14.9   0.0        3.6    7.6   0.0    2.3  2  Mistic    Membrane-integrating protein Mistic
      0.031   13.5   0.0          2    7.6   0.0    2.1  2  OSK       OSK domain
       0.19   11.8   0.0         14    5.7   0.0    2.1  2  GAGBD     GAG-binding domain on surface antigen


Domain annotation for each model (and alignments):
>> Frigida  Frigida-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0046        21      88     170 ..      12      94 ..       3      98 .. 0.80
   2 ?    8.3   0.0   0.00027       1.2      95     171 ..     246     323 ..     228     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0046
     Frigida  88 llkllaaekkeissevkeeAkkiAeeWkekldseggvekansleArgfLqllaaFg.iasefdeeellklvvavarrkqapeLc 170
                 l ++++ + + +++ + +  +   ++W    ++ gg ek + + + +f  llaa g   ++ +++ +++l +++++  ++ + +
  CDO68191.1  12 LTAIAV-NAVPFEKRIAQTIADSTQKWVAACNKAGGGEKCSDISVTAFSTLLAAAGpCDQQNSADAMIDLAKQLNNDPDMIKFA 94 
                 333333.567899999999999999***************************99884566678888899999988888887765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00027
     Frigida  95 ekkeissevkeeAkkiAeeWkekldseggvekansleArgfLqllaaFg.iasefdeeellklvvavarrkqapeLcr 171
                 ++ ++++ + ++  ++A+ W +  ++ gg ++ n++ + +f  llaa    a++ +++ +++l +++++  ++  L++
  CDO68191.1 246 KRGAMKKRIAQDTVAAATPWEDACNKAGGGQQCNPIAVTAFGTLLAAADpCAQQDSADAMIDLAKQLNNDPDMIRLAQ 323
                 5667899999********************************999986536777788889999999999999888876 PP

>> Mistic  Membrane-integrating protein Mistic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0008       3.6      10      37 ..      69      95 ..      64     102 .. 0.90
   2 ?    4.8   0.0    0.0063        28      13      36 ..     299     322 ..     292     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0008
                HTTTHHHHHHHHH--SSS-SS-SS-SHH CS
      Mistic 10 DkmnegldafieLYNeseedkpliefee 37
                D+ +++ da+i+L  ++++d  +i+f +
  CDO68191.1 69 DQ-QNSADAMIDLAKQLNNDPDMIKFAQ 95
                67.899*******************976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0063
                 THHHHHHHHH--SSS-SS-SS-SH CS
      Mistic  13 negldafieLYNeseedkpliefe 36 
                 +++ da+i+L  ++++d  +i++ 
  CDO68191.1 299 QDSADAMIDLAKQLNNDPDMIRLA 322
                 7999****************9986 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00045         2     136     177 ..      60     107 ..      39     120 .. 0.75
   2 ?    3.8   0.0    0.0067        30     140     177 ..     297     335 ..     249     352 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00045
                 HHH.....HHHT.TTS-EE--SGGGB-TTS-B-G.GGB-SS-B--SS- CS
         OSK 136 nfi.....rkeakenykviDlyecfvnengvvry.dcfQtsprkvsgs 177
                  ++     ++++ +   +iDl +++ n+ +++++ ++f ++pr+   s
  CDO68191.1  60 TLLaaagpCDQQNSADAMIDLAKQLNNDPDMIKFaQIFAQQPRNTPTS 107
                 555555555666666789****************779******98444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0067
                 HHT.TTS-EE--SGGGB-TTS-B-G.GGB-SS-B--SS- CS
         OSK 140 keakenykviDlyecfvnengvvry.dcfQtsprkvsgs 177
                  ++ +   +iDl +++ n+ +++r  ++f ++pr+   s
  CDO68191.1 297 AQQDSADAMIDLAKQLNNDPDMIRLaQIFAQQPRNSPTS 335
                 444555579*************99758999999986444 PP

>> GAGBD  GAG-binding domain on surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.012        55      69     120 ..      83     137 ..      68     140 .. 0.74
   2 ?    5.7   0.0    0.0032        14      89     119 ..     334     364 ..     305     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.012
       GAGBD  69 lkktiedlvqyg.vhakiEll..tRqvaqYrkkYpdnteiekliksnlkqtkngn 120
                 + ++  d++++  ++a+  +   t + + Y ++ p+n+e++ l++ +++ +k+++
  CDO68191.1  83 QLNNDPDMIKFAqIFAQQPRNtpTSESVPYCQQAPKNAELNGLFQCQFQGAKQDT 137
                 45556678888778888765511567789*******************8777765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0032
       GAGBD  89 tRqvaqYrkkYpdnteiekliksnlkqtkng 119
                 t q++ Y +k p+n+e++ l++ +++ ++++
  CDO68191.1 334 TSQAVPYCQKAPKNAELQGLFQCQFQGASQD 364
                 6799*******************99665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3317.10
//
Query:       CDO68192.1  [L=530]
Description: hypothetical protein BN946_scf184938.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-92  309.4   0.0    2.8e-92  309.1   0.0    1.1  1  DHO_dh    Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
      0.015   14.4   2.6       0.73    8.8   4.4    2.5  2  FMN_dh    FMN-dependent dehydrogenase
      0.049   13.0   0.2       0.22   10.9   0.1    2.0  2  NMO       Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.1   0.0   4.8e-96   2.8e-92       2     295 .]     107     430 ..     106     430 .. 0.96

  Alignments for each domain:
  == domain 1  score: 309.1 bits;  conditional E-value: 4.8e-96
                 G-EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC...... CS
      DHO_dh   2 latkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeek...... 94 
                 l+++++g ++  p+glAaGfdk+ge+i++l  lgf+ +eigsvtpkpq+GnpkPrvf+l++d +++N++G+++ G+ avl++l++r+ +  +       
  CDO68192.1 107 LKVELWGEQLSSPVGLAAGFDKNGEAIDGLFSLGFSWVEIGSVTPKPQPGNPKPRVFHLPNDSALINRYGFPSDGATAVLARLRARLPKILSYassdsq 205
                 89*************************************************************************************9977668899** PP

                 .................CEEEEEEE-TTS.S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH..........SSEEE CS
      DHO_dh  95 ................kelginlskakkt.enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs..........kvpvl 166
                                 k l++nl+k+k++  + +dd+v++v+++gp+ad+l++NvSsPntpglr +q+ + l++ l  vv++++          ++ +l
  CDO68192.1 206 mddplhgaehaslrsdKLLAVNLGKNKTSpPDSIDDFVAGVHTFGPYADALVVNVSSPNTPGLRGMQSRTLLEELLGGVVAARDevaatsvtkhRPKLL 304
                 ****************99***********999*************************************************************9999** PP

                 EEE-SSSSHHHHHHHHHHHH.HHTECEEEE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHH CS
      DHO_dh 167 vKlaPdltdeekkdiadvll.elkldgiivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekie 264
                  K+aPdl ++e +dia+ ++   ++dg+iv+Ntt++r+   +   +n+   + GGlsG++lk+ al+++r+l+  l ++ip+Ig+GGi+sg Dale+++
  CDO68192.1 305 LKIAPDLDESEVADIAAAVRaTNGVDGVIVSNTTIRRP-PGVSD-PNKF--EQGGLSGPPLKPYALATLRTLRGLLPPSIPLIGCGGISSGADALEYAR 399
                 ****************99998999**************.44444.5544..48********************************************** PP

                 HTECEEEESHHHHHHGTCHHHHHHHHHHHHH CS
      DHO_dh 265 aGAslvqvytalvfegpkiakkikkeleelL 295
                 aGAs+vq+yta+ + g+ +++++k+el++lL
  CDO68192.1 400 AGASAVQLYTAFGYGGVGVCRQVKDELAALL 430
                 ***************************9886 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13   7.6e+02      48      65 ..     107     124 ..     103     128 .. 0.90
   2 ?    8.8   4.4   0.00012      0.73     232     310 ..     321     418 ..     314     447 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
                 --EEETTEEESSSEEE-- CS
      FMN_dh  48 lsttllGqklslPvliaP 65 
                 l+++l+G++ls+Pv++a+
  CDO68192.1 107 LKVELWGEQLSSPVGLAA 124
                 6899***********995 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00012
                 HHHHT..TESEEEE--GGG.................TSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHH CS
      FMN_dh 232 ravea..GvdgivvSNHGG.................RqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaag 310
                  av+a  Gvdg++vSN                          p ++ +L +++  ++ +i+++  gGi++G+D+l     GA+av l  +f yg    
  CDO68192.1 321 AAVRAtnGVDGVIVSNTTIrrppgvsdpnkfeqgglSGPPLKPYALATLRTLRGLLPPSIPLIGCGGISSGADALEYARAGASAVQLYTAFGYGGVGV 418
                 4444333888888888887777777777777665553334456778888888888999***************************9988887774333 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.22   1.3e+03     256     313 ..     269     340 ..     265     344 .. 0.68
   2 ?   10.9   0.1   3.6e-05      0.22     193     225 ..     379     411 ..     351     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.22
         NMO 256 sGrpaRalatelleeleeakiatlalpeah...............elakkiraalveagnteegllwagqgid 313
                  G++ R+l  ell+ +  a+ + +a  + +               ++ + i+aa+    n  +g++++++ i+
  CDO68192.1 269 RGMQSRTLLEELLGGVVAARDEVAATSVTKhrpklllkiapdldeSEVADIAAAVRAT-NGVDGVIVSNTTIR 340
                 5788888888888888775555555554444677777777777766777776655444.88888888888775 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.6e-05
         NMO 193 diPviAaGGiidrrgvaaaLalGAsgvqigtrf 225
                 +iP+i  GGi  + +     ++GAs+vq+ t+f
  CDO68192.1 379 SIPLIGCGGISSGADALEYARAGASAVQLYTAF 411
                 5******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3299.33
//
Query:       CDO68193.1  [L=153]
Description: hypothetical protein BN946_scf184938.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.17   12.0   0.0    1.2  1  DUF3911   Protein of unknown function (DUF3911)


Domain annotation for each model (and alignments):
>> DUF3911  Protein of unknown function (DUF3911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.3e-06      0.17      16      61 ..      71     117 ..      62     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.3e-06
     DUF3911  16 mlqlfdlmdtkGfckfknyveveanetk.hnefvasidlqanessaq 61 
                  l l +  +  G c f n   +eane + +n fv++i  q++ + a 
  CDO68193.1  71 YLYLCESPNCAGTCTFTNLGGIEANECTlNNPFVSAIIQQTYANIAY 117
                 56677777889************999663778****99999988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1124.84
//
Query:       CDO68194.1  [L=153]
Description: hypothetical protein BN946_scf184938.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1132.23
//
Query:       CDO68195.1  [L=148]
Description: hypothetical protein BN946_scf184938.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1069.34
//
Query:       CDO68196.1  [L=68]
Description: hypothetical protein BN946_scf184938.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       163  (0.00909142); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 529.53
//
Query:       CDO68197.1  [L=507]
Description: hypothetical protein BN946_scf184938.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-33  114.6   0.0    1.5e-32  113.5   0.0    1.5  1  Velvet          Velvet factor
  ------ inclusion threshold ------
        0.2   10.9   0.7       0.39   10.0   0.7    1.4  1  NOA36           NOA36 protein
       0.68   10.3   4.7        1.5    9.2   4.7    1.5  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
       0.69    7.9   2.5       0.97    7.4   2.5    1.1  1  Sporozoite_P67  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   3.4e-36   1.5e-32       2     248 ..      57     335 ..      56     338 .. 0.75

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 3.4e-36
                 EEEEEE---EEE---SS-S-----BS--EEEEEEEET.TT-SB-.......-GGG---TTEEEEEEEEETTSSSB--EE....--.---------..-- CS
      Velvet   2 sLevvQqPkrARmCgfgdkdrrpidPppvvqLrvtda.etnsev.......dveeldssffvvtvdLwsedgtkevnlv....kssssasssiss.eas 87 
                 +L+ +Q+   +R  ++  kd+rp+dPppvv  r ++  + ++         d++e      +++vdL+++    e+++     +          + ++ 
  CDO68197.1  57 ELQEIQKADLGR--KYARKDKRPLDPPPVVVCRFFELiNRGDGLkpvevelDPDEHVMLGALCHVDLFPVPSVPEKQSTsgynE-------GP-TaHDY 145
                 799*********..9*********************666655443444444788888888899999999554444333211121.......11.12333 PP

                 -----------..................................---------------------------------------------EESEEE--E CS
      Velvet  88 ssssqsseess..................................sspksqassaessapsssaapsaqeekekkeatlssssnqasskltrnLiGslv 152
                 +++ ++ +++                                   s p++  s+ +++ ps + ++ +++e++   a  ++   ++ss++t +L G ++
  CDO68197.1 146 RTALPPLQTGGpfalsplhvpqmfpppsllfdipgaafpapsrglSGPSPFFSAFQRQPPSPAGRYGSTAEDSDIVAWFDMFPIRESSRCTVMLAGATF 244
                 33444444443555555555556666677777777776666666544444444445555555555555555666777778888999************* PP

                 EE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE---EEEE-TTT--------HHHHHHHHTT----XXX CS
      Velvet 153 asafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfSdpFtVysakkFpGvlesTaLskalakqGikipiRk 248
                 ++a++  d ++k+   F f+DL+V++eGtF Lr+r+++v +    ++++  ++p+l +++   F+Vys k+FpG+  sT+L+k+la  G+++++R 
  CDO68197.1 245 VEASVI-DYKGKRTAMFAFSDLAVKIEGTFVLRYRMLSVFS----QRAMLPRMPILSQCYGGIFKVYSTKDFPGLKASTDLTKHLALYGVRVNLRD 335
                 **9998.67799*****************************....89999********************************************96 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.7   8.6e-05      0.39     254     294 ..     344     384 ..     301     390 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.6e-05
       NOA36 254 sdydaylkalasgddeddegdedddddddeedddeeedded 294
                 s+  a ++a ++ +++ ++g +   d+dde++d+e+ed ed
  CDO68197.1 344 SEIIASRGAHGARSQSRHRGGDMSSDHDDEDEDEEDEDVED 384
                 34444444444433333322222222222222222222121 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.7   0.00034       1.5      19      63 ..     350     390 ..     334     402 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00034
     PBP1_TM  19 kparkkasrrrrrdddyddeyddeedDdddddeeeevprkgkkkk 63 
                 + a++++s+ r+r  d       ++dD+d+d+e+e+v   g+++ 
  CDO68197.1 350 RGAHGARSQSRHRGGDMSS----DHDDEDEDEEDEDVEDEGRRAF 390
                 3334445555666665555....5566666666666666665554 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.5   0.00022      0.97     237     328 ..     367     463 ..     318     485 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00022
  Sporozoite_P67 237 esnssseGeedddeeeeeen.ksiepg..vGvpGvrvgaatssssttspssstttttpassg.psaqgshgs.ss.rnavtrstdsisgpipspG 325
                     +s+   e e+++de+ e+e+ ++  pg    ++G  + a   +s + +  ++t +t p+s g psa+ s+   s+  + ++ s  s++   psp 
      CDO68197.1 367 SSDHDDEDEDEEDEDVEDEGrRAFRPGsmASIAGW-LPAQPLASGSGTGFGATMDTSPSSPGpPSAPSSPSYySPtMSVGSFSFASVAPYPPSPT 460
                     45555555555555544444156778732467773.44555555555677899999999999889998886413314455566677776667776 PP

  Sporozoite_P67 326 epr 328
                     + r
      CDO68197.1 461 ATR 463
                     655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3418.12
//
Query:       CDO68198.1  [L=250]
Description: hypothetical protein BN946_scf184938.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
       0.01   15.1   1.4      0.017   14.3   1.4    1.4  1  Ion_trans  Ion transport protein
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.24   10.8   0.0    1.2  1  ComA       (2R)-phospho-3-sulfolactate synthase (ComA)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.4   1.9e-06     0.017       8      76 ..     162     224 ..     155     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHH CS
   Ion_trans   8 illlillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDfl 76 
                 + ++il  ++++ale++       + +i+e++ +++   ftle +  +   g+   k Y++ +wn +D+ 
  CDO68198.1 162 MNFVILFILFVVALEYSELD----RiNIAEAIFMIYALGFTLEKVAAMQEHGI---KVYFKGTWNGFDLA 224
                 44666666777777555555....3479*************************...************85 PP

>> ComA  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.7e-05      0.24      36      74 ..     180     218 ..     172     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.7e-05
                 -SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH CS
        ComA  36 iDglKlgggtsallpeeilrekielahehgvyvstGgtl 74 
                 +D + ++ + ++++   +  ek++ ++ehg++v++ gt+
  CDO68198.1 180 LDRINIAEAIFMIYALGFTLEKVAAMQEHGIKVYFKGTW 218
                 6888899999****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1681.93
//
Query:       CDO68199.1  [L=156]
Description: hypothetical protein BN946_scf184938.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1098.87
//
Query:       CDO68200.1  [L=488]
Description: hypothetical protein BN946_scf184938.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.5e-131  437.9  26.3     4e-131  437.7  26.3    1.0  1  ERG4_ERG24      Ergosterol biosynthesis ERG4/ERG24 family
    3.8e-06   26.6   2.4    7.7e-06   25.6   2.4    1.5  1  DUF1295         Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
      0.011   16.1   0.3      0.011   16.1   0.3    3.9  5  PEMT            Phospholipid methyltransferase
      0.018   15.4   1.7      0.045   14.2   0.0    2.5  3  ICMT            Isoprenylcysteine carboxyl methyltransferase 
      0.025   14.6   0.1      0.043   13.8   0.1    1.3  1  Lamprin         Lamprin
       0.15   10.8   4.5       0.17   10.6   3.4    1.5  1  Sulfate_transp  Sulfate permease family


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.7  26.3  1.3e-134    4e-131       2     432 .]      51     488 .]      50     488 .] 0.96

  Alignments for each domain:
  == domain 1  score: 437.7 bits;  conditional E-value: 1.3e-134
  ERG4_ERG24   2 eieyefggeigalgikiglpvlelylnaiskfealklllpksldlaelkneikeldllvfegaiwerklftvfllfyvlqavlylllpGkvveGleLs. 99 
                 ++eyefgg+ g+++i++g+p+l++yl+ +  f++ +l++p s+d   +  ++  + + + + a ++++++ v+    v q+ l  ++pG + eGl++  
  CDO68200.1  51 HVEYEFGGPWGVVAIMTGFPILMYYLWICLVFYDGQLVHPSSVDD--IVPFLWRMWEHIRVDASPNAYAWKVYTGLIVYQLFLAWIMPGYMQEGLPVPs 147
                 689***************************************963..33333333345666678********************************986 PP

  ERG4_ERG24 100 .ngkkLkYkinalaslllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkdkqlaaggvsGnliYDffiGreLnPRlg 197
                    + L Yk+na+  +++++   +vl++t +f++t +idnf++l++va++ +f +++++Y  ++ + +        + ++sGn iYD+f+G++LnPR+g
  CDO68200.1 148 lGYRTLMYKCNAVGCVYTTMITAAVLHYTGIFRMTEIIDNFGHLMTVAMIYGFGVSFFMYFITVATGN--------QIRMSGNFIYDVFMGACLNPRIG 238
                 66788**********************************************************99988........679******************** PP

  ERG4_ERG24 198 slDlkmFlelRlgllllllinlaallkqyklygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdlvlvPftYslqtlYLsvh.P 295
                  +Dlkm+le+R+++++ ++++++ + kqy++yg+vt+++++++la +lY+++++k+ee +  t+D+ ++++GF+++F++ ++vPf Y    +Y+ +h P
  CDO68200.1 239 PVDLKMWLEVRIPWVIVFFMSVSGACKQYEQYGYVTPNMAFMVLATWLYLNACAKGEECIPQTWDMFHEKWGFLVIFWNFAGVPFSYIYSVVYMASHdP 337
                 *************************************************************************************************** PP

  ERG4_ERG24 296 selgwst.vlvailvvlligyyiFrsansqknnFR...........tnPedpk..lkllkyiqtktGskLlvsGWyglarkinYlgDwlqslswsLatg 380
                 s++ +st + +a+++ ll +yyi++++ sqk+ F+           t+P++p+  l+++ yiqt++G++Ll++GW++++rk+nY++Dw++sl+w L  g
  CDO68200.1 338 SKYRFSTpTYIALYATLLTAYYIWDTSMSQKSRFKmqtqgitsyrkTFPQLPWgtLNNPSYIQTAHGNRLLTDGWWRYSRKPNYVADWVMSLTWGLCQG 436
                 *******99*******************************************833556***************************************** PP

  ERG4_ERG24 381 fqsvlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                   s +pyfy+++F+v+L+hR +RD e+C  kYG+dwe+Y+ +v++k+ip+vy
  CDO68200.1 437 TCSAIPYFYSVFFIVVLIHRCSRDFERCAIKYGKDWEKYCSIVKWKFIPFVY 488
                 **************************************************98 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   2.4   2.6e-09   7.7e-06      75     228 ..     306     475 ..     280     480 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.6e-09
     DUF1295  75 rkelgktiallsllvvfvlQavllylvalpvllaaaskeeqalkaldviglalw.lvgivlealaDqQlsaf.........................kk 147
                  +++g      +l++++ +  v    + + v++a    ++  +++  +i+l  + l++  +  ++  Q+s+f                          +
  CDO68200.1 306 HEKWG------FLVIFWNFAGVPFSYIYSVVYMASHDPSKYRFSTPTYIALYATlLTAYYIWDTSMSQKSRFkmqtqgitsyrktfpqlpwgtlnnpSY 398
                 33333......678899**999999999999999765556699999999986551667778888999**************************988855 PP

     DUF1295 148 dpankgk.vldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltlllvfvsgipllEkkalkkykdkeey 228
                   +++g+ +l++G wrysR PNY +++++ +   l   + ++   +    +  ++++l+ + s  +  E+ a k+ kd e+y
  CDO68200.1 399 IQTAHGNrLLTDGWWRYSRKPNYVADWVMSLTWGLCQGTCSA---IPYFYSVFFIVVLIHRCS--RDFERCAIKYGKDWEKY 475
                 55667776******************9976544333222211...123344334444444444..67777777766555555 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4         4   1.2e+04      60      79 ..      63      76 ..      59      83 .. 0.36
   2 ?    0.4   1.5      0.28   8.3e+02      26      52 ..     159     183 ..     151     221 .. 0.54
   3 ?   -1.0   0.4      0.78   2.3e+03       3      36 ..     196     229 ..     194     231 .. 0.75
   4 ?   -0.0   0.1      0.38   1.1e+03      20      57 ..     364     399 ..     346     403 .. 0.62
   5 ?   16.1   0.3   3.7e-06     0.011      28      86 ..     391     451 ..     375     469 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
        PEMT 60 tlgflGlaLitgsaagllla 79
                +      a++tg++  + ++
  CDO68200.1 63 V------AIMTGFPILMYYL 76
                3......3444444422211 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
        PEMT  26 efgtfygdfFlelmdklvtsGiYryln 52 
                   g +y ++  ++   l ++Gi+r+++
  CDO68200.1 159 AVGCVYTTM--ITAAVLHYTGIFRMTE 183
                 555555555..5555666666666553 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.78
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFl 36 
                 +i G+ + ++ +++++++ ++++  g f+ d+F+
  CDO68200.1 196 MIYGFGVSFFMYFITVATGNQIRMSGNFIYDVFM 229
                 5667777777788888888888888888888886 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.38
        PEMT  20 siealgefgtfygdfFlelmdklvtsGiYrylnnPeyv 57 
                 s+++ ++f++ ++ +   + +k   + ++  lnnP y+
  CDO68200.1 364 SMSQKSRFKMQTQGI--TSYRKTFPQLPWGTLNNPSYI 399
                 444444444444443..444567777789999***998 PP

  == domain 5  score: 16.1 bits;  conditional E-value: 3.7e-06
        PEMT  28 gtfygdfFlelmd..klvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvy 86 
                 gt  +  ++++ +  +l t+G++ry++ P yv+  ++ l + L  g++ ++ +   v++++
  CDO68200.1 391 GTLNNPSYIQTAHgnRLLTDGWWRYSRKPNYVADWVMSLTWGLCQGTCSAIPYFYSVFFIV 451
                 6666677776666779***************************999888643333333222 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.8   1.1e+04      66      78 ..     159     169 ..     145     182 .. 0.50
   2 ?   -3.4   0.0       4.6   1.4e+04      11      35 ..     349     373 ..     345     382 .. 0.57
   3 ?   14.2   0.0   1.5e-05     0.045      27      84 ..     399     456 ..     394     462 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.8
        ICMT  66 akltalvllalva 78 
                 a  + +v +++ +
  CDO68200.1 159 A--VGCVYTTMIT 169
                 3..4333333222 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
        ICMT  11 lrlvvmatlGeiwttrvailpdhkl 35 
                  +++ + t+  iw t +  ++  k+
  CDO68200.1 349 ALYATLLTAYYIWDTSMSQKSRFKM 373
                 4555566666666666655555555 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.5e-05
        ICMT  27 vailpdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllfvR 84 
                 ++++ + +l ++g ++y r PnY++  +++l   l       +  + +++ +++l++R
  CDO68200.1 399 IQTAHGNRLLTDGWWRYSRKPNYVADWVMSLTWGLCQGTCSAIPYFYSVFFIVVLIHR 456
                 6778999******************666666554443333335555555555555555 PP

>> Lamprin  Lamprin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.4e-05     0.043      53      94 ..     138     179 ..     128     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
     Lamprin  53 lgvaglgvaglgygglgypgaalggvythhaaglvhpygglg 94 
                     gl v  lgy  l y   a+g vyt   ++ v  y+g+ 
  CDO68200.1 138 YMQEGLPVPSLGYRTLMYKCNAVGCVYTTMITAAVLHYTGIF 179
                 45679***********************99888888888864 PP

>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4   5.7e-05      0.17      86     188 ..     164     270 ..     152     296 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.7e-05
  Sulfate_transp  86 tltllaGviqvllGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnlek.....vnlakvvlgllllvvL 175
                      +t+++ +++   G++R+  +++ + + + +++i G ++  ++  i v +g + + + ++++ v++    n          +++v ++ ++++++
      CDO68200.1 164 YTTMITAAVLHYTGIFRMTEIIDNFGHLMTVAMIYGFGVSFFMYFITVATGNQIRMSGNFIYDVFMGACLNPRIgpvdlKMWLEVRIPWVIVFFM 258
                     578999999******************************************99777888888888776544322232223477777777777777 PP

  Sulfate_transp 176 lvtkellkklkkl 188
                      v+   +k+++++
      CDO68200.1 259 SVSGA-CKQYEQY 270
                     77666.6666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3161.84
//
Query:       CDO68201.1  [L=614]
Description: hypothetical protein BN946_scf184938.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-29  102.5   0.7    3.2e-29  101.0   0.5    1.9  2  DWNN          DWNN domain
     0.0035   17.2   4.8     0.0065   16.3   4.8    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0044   16.8   0.9     0.0093   15.8   0.9    1.5  1  zf-CCHC_2     Zinc knuckle
  ------ inclusion threshold ------
      0.039   13.8   7.3      0.074   12.9   7.3    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.068   13.7   0.1        0.2   12.2   0.1    1.8  1  Trm112p       Trm112p-like protein
       0.15   13.1  10.9       0.97   10.5   2.8    4.1  4  DUF5320       Family of unknown function (DUF5320)
        0.4    9.1   5.4       0.65    8.4   5.4    1.3  1  Borrelia_P83  Borrelia P83/100 protein
       0.51   10.3   6.2       0.97    9.5   6.2    1.5  1  zf-RING_5     zinc-RING finger domain
       0.72   10.2  11.8      0.047   14.0   6.0    1.9  2  zf-RING_2     Ring finger domain
        1.2    9.2   5.6        2.3    8.3   5.6    1.5  1  zf-RING_UBOX  RING-type zinc-finger
        1.4    8.9   6.9        3.3    7.7   6.9    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
        3.6    8.0   8.3          1    9.7   1.5    2.4  2  Efg1          rRNA-processing protein Efg1
        4.3    6.3   6.9         12    4.8   6.9    1.7  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
        8.6    5.6  17.2         17    4.7  17.2    1.4  1  DUF4407       Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DWNN  DWNN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.5   2.5e-32   3.2e-29       1      74 []       5      77 ..       5      77 .. 0.97
   2 ?   -2.4   0.0       4.8   6.1e+03      49      69 ..     167     189 ..     163     190 .. 0.72

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 2.5e-32
        DWNN  1 vyYkFksqkdyskitfdgtsisvfeLKreIiekkklgkgtdfdLqiynaqtkeeydddselIprntsvivrRvP 74
                v+Y+F+sqkd s++tfdgt+isvf+LK+eIi +++l k++dfdL++ ++ ++eey+dds++Ipr++sviv+RvP
  CDO68201.1  5 VFYRFRSQKDESRVTFDGTGISVFDLKKEIILANNLTKANDFDLVVLDN-SGEEYKDDSQIIPRSSSVIVKRVP 77
                8*********************************************975.6888*******************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.8
        DWNN  49 aqtke..eydddselIprntsvi 69 
                 aqt +  e ++  ++Ip+n +v+
  CDO68201.1 167 AQTANweETQEKMSQIPSNERVL 189
                 55554447888888999999986 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   4.8     5e-06    0.0065       5      49 ..     329     374 ..     326     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5e-06
                 -TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B--E CS
  zf-C3HC4_3   5 CviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpiek 49 
                 C+i  +  r++v  pC+ + +CeeC+++ l  r+  Cp C r+i +
  CDO68201.1 329 CPIDGKLYRDAVKTPCCGTLYCEECVQTHLLeRDFLCPNCARKIPS 374
                 6666667899999**99888******987766**********9975 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   7.3e-06    0.0093      13      21 .]     238     246 ..     237     246 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-06
   zf-CCHC_2  13 GHyIqdCPt 21 
                 GH+IqdCPt
  CDO68201.1 238 GHWIQDCPT 246
                 9*******8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   7.3   5.8e-05     0.074       2      40 .]     329     368 ..     328     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn.eCPlC 40 
                 Cpi    + d++ +  Cg  +C++C+++ L e +  CP C
  CDO68201.1 329 CPIDGKLYRDAVKTPCCGTLYCEECVQTHLLERDfLCPNC 368
                 9999999****99999************7777777***** PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00016       0.2      33      61 ..     317     370 ..     268     373 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
                 S-SS----S.........................CHHTTEECCCCEEEETTTTE CS
     Trm112p  33 lpkekpedy.........................ellleldieegeLvCpncgr 61 
                 +++ +p+d+                         e++++++ +e  + Cpnc r
  CDO68201.1 317 VRERPPSDPslacpidgklyrdavktpccgtlycEECVQTHLLERDFLCPNCAR 370
                 55555555566666666666666666677779**99****************87 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.4   5.1e+02      29      63 ..     101     139 ..      86     182 .. 0.55
   2 ?    2.9   0.1      0.19   2.4e+02       7      22 ..     277     292 ..     274     311 .. 0.83
   3 ?   -1.4   0.0         4   5.1e+03      73      97 ..     457     481 ..     443     483 .. 0.75
   4 ?   10.5   2.8   0.00076      0.97      13      86 ..     526     589 ..     520     592 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.4
     DUF5320  29 pgyansagfGrgrggrglgrgfgrrrraggarla........a 63 
                 pg       G g gg  +gr  g ++ ++ ++ +        +
  CDO68201.1 101 PG----KSSGSGGGGNNWGRPGGHMSKRFDYKEQpkeepkaaE 139
                 33....3334444667777766665555555544333343340 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
     DUF5320   7 tGpmGlGpmtGrglGy 22 
                 tGp+G+G m     Gy
  CDO68201.1 277 TGPLGQGVMVTPEGGY 292
                 9*******98776666 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4
     DUF5320  73 eekelLeeqaeaLeeeleaikkrlk 97 
                 + +++L + +  L++++++++  l+
  CDO68201.1 457 DVAQVLAQTIPQLQAQIQQLQVMLN 481
                 5567888888888888888877665 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00076
     DUF5320  13 GpmtGrglGyCagadapgyansagfGrgrggrglgrgfgrrrraggarlaaaetaeaskeeekelLeeqaeaLe 86 
                 Gpm G g+G+ a + +pg+a   g+G    g+g+++ ++     + ++++++++a +++  ++  L+++ + L+
  CDO68201.1 526 GPM-GVGAGMGAPGMVPGMA--PGMGP---GMGMQQEYRQ----WTNPFPNQQPAGQDSAYQRLPLNNRRRQLK 589
                 333.6666666666666554..45555...7777777776....555555666677777777777777777776 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.4    0.0005      0.65     268     347 ..     381     472 ..     367     515 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0005
  Borrelia_P83 268 skkedkkvaeekkreiekaqkeikkkdeeakkakdak.......aedlkkeskaeek.....eaedkeleakkereevaeDlqkikeevkak 347
                   +k+   +v +   +eie++++e++++d +a+ + +a+       a d+ k + ++          d e    +   +va+ l +++++ +a+
    CDO68201.1 381 DKPMRARVHDYVDQEIERSRQEAERQDRQAQENAEAAqaaqadgAADADKSAAENATesavgDGGDGEFYGDQSGLDVAQVLAQTIPQLQAQ 472
                   45666777788889999999999999999999999855444333222222222111122233333444444555555555555555555555 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.2   0.00075      0.97      14      43 ..     339     369 ..     328     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00075
   zf-RING_5  14 kfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 ++ + +Cg  +Ce+C+++ l e+++ Cp C 
  CDO68201.1 339 AVKTPCCGTLYCEECVQTHLlERDFLCPNCA 369
                 4555678999********************6 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3       2.9   3.7e+03      17      34 ..     226     241 ..     218     246 .. 0.56
   2 ?   14.0   6.0   3.6e-05     0.047      15      43 ..     338     368 ..     328     369 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
   zf-RING_2  17 lllpCgHvfhreClerwl 34 
                 +++ C+ v++   + +w+
  CDO68201.1 226 MTDRCRRVMCV--IGHWI 241
                 44458777753..34555 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.6e-05
   zf-RING_2  15 svlllpCgHv.fhreClerwlrssst.CPlC 43 
                 +++++pC+ + +++eC++++l ++   CP+C
  CDO68201.1 338 DAVKTPCCGTlYCEECVQTHLLERDFlCPNC 368
                 44566777655******9987777777**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.6    0.0018       2.3       1      39 []     329     366 ..     329     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0018
  zf-RING_UBOX   1 CpIClelftdPlvlp.CGHtFCreClwelskslegafkCP 39 
                   CpI   l+ d +++p CG  +C+eC+  ++  le+ f CP
    CDO68201.1 329 CPIDGKLYRDAVKTPcCGTLYCEECV--QTHLLERDFLCP 366
                   99*99***98844644**********..699999999999 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.9    0.0025       3.3       1      41 []     329     368 ..     329     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0025
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 Cpi  + + +++++  C+  +C++C++++l  ++ + CP+C
  CDO68201.1 329 CPIDGKLYRDAVKTPCCGTLYCEECVQTHLL-ERDFLCPNC 368
                 56666667777766678889***********.99999**** PP

>> Efg1  rRNA-processing protein Efg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.8      0.24   3.1e+02      27      84 ..     393     416 ..     370     437 .. 0.56
   2 ?    9.7   1.5    0.0008         1       1      43 [.     469     510 ..     469     518 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH CS
        Efg1  27 ereLkaleaeleeaekkekekklakkYhkvrFfErkKatRklkrlkkqleeledeeek 84 
                 ++e++  ++e+e++ ++++e+                                  +e 
  CDO68201.1 393 DQEIERSRQEAERQDRQAQEN----------------------------------AEA 416
                 444444444444444444433..................................332 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0008
                 HHHHHHHHHHHHS-SS---SHHHHHHHHHHHHHHHHHHHHHHH CS
        Efg1   1 lkkkiRdlkRlLakkekLpaevreekereLkaleaeleeaekk 43 
                 l+++i++l+ +L +++ Lpa+vr++ + + ++l+ el+++++ 
  CDO68201.1 469 LQAQIQQLQVML-NNTALPAQVRQQAQLKHQQLQIELQQSQAV 510
                 5789********.6689********************998876 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.9    0.0097        12       1     100 [.     350     476 ..     350     511 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0097
       Atg14   1 CplCerss...rpfiCesClrngperlyelrerlaklksekeslkkkiekalegke.eaeqledkiknkkakleelksliadlrer............. 82 
                 C  C +++   r f+C++C+r+     +    +l+  k  ++ +   +++++e+ + eae+++++++ ++++++  +++ a   ++             
  CDO68201.1 350 CEECVQTHlleRDFLCPNCARK-----IPSLDKLIVDKPMRARVHDYVDQEIERSRqEAERQDRQAQENAEAAQAAQADGAADADKsaaenatesavgd 443
                 88899999999***********.....555555555555555555555555555552344556666666666666655554444444455555555555 PP

       Atg14  83 ...............lqelkdklsqlkkeieek 100
                                 q l +++ ql+++i++ 
  CDO68201.1 444 ggdgefygdqsgldvAQVLAQTIPQLQAQIQQL 476
                 555566655555555555555555555555555 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  17.2     0.013        17     126     238 ..     391     511 ..     380     516 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
     DUF4407 126 qlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake..kkaqldaaqaelaelkakld......atarlaalr 216
                  ++++ +   +e+e+q +++q++ +aa+a+ ++  a+a+k +  + ++   g+ G+g+ +      + ++ + +++ +l+a+++      ++++l+a+ 
  CDO68201.1 391 YVDQEIERSRQEAERQDRQAQENAEAAQAAQADGAADADKSAAENATESAVGDGGDGEFYGDqsGLDVAQVLAQTIPQLQAQIQqlqvmlNNTALPAQV 489
                 566778888899999999999999999999999999999999998888888899999999885533444445555666666666666666888888888 PP

     DUF4407 217 aelaeleaerakeraasqaaaa 238
                 +++a+l+ ++ +++ ++ +a a
  CDO68201.1 490 RQQAQLKHQQLQIELQQSQAVA 511
                 8888888888888877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1841  (0.102683); expected 358.6 (0.02)
Passed bias filter:                      862  (0.0480785); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 3744.48
//
Query:       CDO68202.1  [L=705]
Description: hypothetical protein BN946_scf184938.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-67  225.5   4.2    9.5e-67  225.0   4.2    1.1  1  Vps5            Vps5 C terminal like
    1.4e-27   95.9   0.3    4.4e-26   91.1   0.0    2.3  2  PX              PX domain
    2.1e-05   24.3   3.1    2.8e-05   23.9   3.1    1.1  1  BAR             BAR domain
     0.0027   17.5   3.3      0.024   14.4   3.3    2.1  1  BAR_3           BAR domain of APPL family
  ------ inclusion threshold ------
      0.023   14.1   0.9       0.22   11.0   0.9    2.1  1  BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
      0.053   13.1   2.4       0.32   10.5   2.4    1.9  1  Arfaptin        Arfaptin-like domain
      0.074   13.4   1.7        1.5    9.2   0.1    3.1  3  CLZ             C-terminal leucine zipper domain of cyclic nu


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.0   4.2   3.7e-70   9.5e-67      10     235 ..     453     680 ..     445     681 .. 0.97

  Alignments for each domain:
  == domain 1  score: 225.0 bits;  conditional E-value: 3.7e-70
        Vps5  10 ssisks..stkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdv 106
                  +i +    ++f+E+DewF  +k +ldsle+qL+ L+k+ie++ ++r+e+a+a++e+a++++ La++++ k+ls+ ls laeve+  +el++ qa++d+
  CDO68202.1 453 TAIGQTiaGPRFHETDEWFDRQKGYLDSLETQLRGLVKSIEAVARNRQEVAAAAGEFAQTISDLAACDVGKQLSASLSGLAEVERLAQELQSTQAHEDM 551
                 55555556799**************************************************************************************** PP

        Vps5 107 ltLgetideylrligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFeterv 205
                 +t+  t+dey rli+sv+ +f++Rv++++ wq+a++ l+++k++ e  +++++ +++ l    + v+++erk+ +a++eF+++s+ +k+E++rFe+er+
  CDO68202.1 552 VTILSTADEYARLINSVRLAFTSRVRVYHAWQNADAHLKRTKQTHENNRAQGRLAPEMLSRSLALVADAERKALDARQEFDHVSRLVKSEVARFEQERI 650
                 *************************************************************************************************** PP

        Vps5 206 edfknvvekyLesaiesqkevielWetfls 235
                 edfkn++e +L  +i +qk++i+ We + +
  CDO68202.1 651 EDFKNSLEAFLHGMISRQKQLIKAWEGYQQ 680
                 **************************9976 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   1.7e-29   4.4e-26       3     113 .]     319     431 ..     317     431 .. 0.97
   2 ?    2.6   0.1      0.05   1.3e+02      72      97 ..     636     667 ..     576     673 .. 0.77

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.7e-29
                 EEEEEEEEEEEETTSSEEEEEEEEEETTS.....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHT CS
          PX   3 laqvsvleretsgskkhsyylyevelktg.....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrlln 96 
                 ++ +sv ++++ g+ +  y++y+v++kt      +++++v RrYsdF +L++ L  + p+v++Pp P+k +fg+   +d+ef+++rr gLe+ +q+++n
  CDO68202.1 319 VFVISVDDPQKVGDPIRPYTMYTVHTKTTspmykKSTFSVLRRYSDFLWLYETLSMNNPGVVVPPVPEKAPFGR---FDNEFVQQRRLGLEKCIQKIAN 414
                 667899999999*************************************************************9...********************** PP

                 SCHHHHSHHHHHHHHSS CS
          PX  97 hpelrnsevlteFLevs 113
                 hp+l+++++l+ FLe++
  CDO68202.1 415 HPVLQKDPDLKLFLESD 431
                 **************985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.05
                 S......CTTSHHHHHHHHHHHHHHHHHHHTS CS
          PX  72 v......rkkdeefiekrrkgLeeyLqrllnh 97 
                         ++++e ie  +++Le++L  +++ 
  CDO68202.1 636 RlvksevARFEQERIEDFKNSLEAFLHGMISR 667
                 05555557899***************999875 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   3.1   1.1e-08   2.8e-05      24     236 ..     467     681 ..     453     684 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
         BAR  24 LDedFeelerrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedssfgkalekygeavkklaqteeelekrvetn 122
                  De F++ +  ld++e+  + lvk+++++ +  +++ a+            +++a+++ ++ +   +++  +  l  ++e+++  ++++++   +   +
  CDO68202.1 467 TDEWFDRQKGYLDSLETQLRGLVKSIEAVARNRQEVAAAA-----------GEFAQTISDLAACDVGKQL-SASLSGLAEVERLAQELQSTQAHEDMVT 553
                 4777777777777788888888887777777444444444...........5999999999998888887.7667777776666666666666666678 PP

         BAR 123 fldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde..............ekaeeelrkAqqkfeesneelkaeLpnllaleve 207
                 +l++ +e++   +  ++ + + + +  +++ +a a+lk+ k++ + ++ +               + ae++   A+q+f+  ++++k e   + + ++e
  CDO68202.1 554 ILSTADEYA-RLINSVRLAFTSRVRVYHAWQNADAHLKRTKQTHENNRAQGrlapemlsrslalvADAERKALDARQEFDHVSRLVKSEVARFEQERIE 651
                 999999999.999*************************99988888877669*********************************************** PP

         BAR 208 fv.nqlqafveaqldfhkqaaqlleqlqqq 236
                  + n+l+af+   ++ +kq+ +  e  qq+
  CDO68202.1 652 DFkNSLEAFLHGMISRQKQLIKAWEGYQQT 681
                 *********998888888777777666665 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   3.3   9.3e-06     0.024      24     158 ..     478     607 ..     462     686 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.3e-06
       BAR_3  24 leelekklkkllKlckrlieagkaysaaqkqfaqsLrelkkeskgdeetdesLkkfsellqelenehtill.dqaqrsikkpLekFrkedlkevkekkk 121
                 l+ le++l  l+K+++++    +++ aa  +faq++++l+  + g ++   sL    + l e+e+  ++l  +qa++ +++ L+  + e  + +   + 
  CDO68202.1 478 LDSLETQLRGLVKSIEAVARNRQEVAAAAGEFAQTISDLAACDVGKQLSA-SL----SGLAEVERLAQELQsTQAHEDMVTILS-TADEYARLINSVRL 570
                 799*************************************9999876554.44....344455555555531466666655554.46677777888888 PP

       BAR_3 122 kFdkesekleaaleknaqlskkkkeseleeadnelka 158
                 +F      + a ++  a+l+++k+ +e ++a+  l+ 
  CDO68202.1 571 AFTSRVRVYHAWQNADAHLKRTKQTHENNRAQGRLAP 607
                 8888888888888888888888777777777766654 PP

>> BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.9   8.4e-05      0.22     179     218 ..     626     665 ..     478     676 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
  BAR_3_WASP_bdg 179 klkkrvsvisyallaeinhfhserieDfksvmqlyLkqqv 218
                     + ++  + +s  +++e+  f +erieDfk+ ++ +L+  +
      CDO68202.1 626 DARQEFDHVSRLVKSEVARFEQERIEDFKNSLEAFLHGMI 665
                     345678899**************************98766 PP

>> Arfaptin  Arfaptin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.4   0.00012      0.32      31     220 ..     467     666 ..     459     675 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..H-CCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHT CS
    Arfaptin  31 vddeLeaklevlreiketykelvklaknlskallklsqtekelGdvfkdlskrekqealgeaftatgealrllakqgeallkalkrfiselntf..vnk 127
                 +d+ ++ +   l + + + ++lvk +++ ++  ++++ +  e+++ ++dl++ +  ++l+++++  +e  rl+++ +++  +a + +++ l+t   + +
  CDO68202.1 467 TDEWFDRQKGYLDSLETQLRGLVKSIEAVARNRQEVAAAAGEFAQTISDLAACDVGKQLSASLSGLAEVERLAQELQST--QAHEDMVTILSTAdeYAR 563
                 78889999999************************************************************98765544..444555555555433568 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TSTSSTTCHHHHHHHHHHH..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Arfaptin 128 aieDTllTikkyedarieYrayllklkeasdEldpevakqeekfreaqenv..........qeakekfdklrkDvlqKveLLeekrvkvlskqLalyqn 216
                  i+  +l      ++   ++ +   lk +++  +++ a+ +  ++   ++            +a+++fd  +  v+  v   e++r+++ +++L+++ +
  CDO68202.1 564 LINSVRLAFTSRVRVYHAWQNADAHLKRTKQTHENNRAQGRLAPEMLSRSLalvadaerkaLDARQEFDHVSRLVKSEVARFEQERIEDFKNSLEAFLH 662
                 899999888887777777877777777777655555555444444444444555777766688999999999999999999999999999999999988 PP

                 HHHH CS
    Arfaptin 217 alaa 220
                  +  
  CDO68202.1 663 GMIS 666
                 7765 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19   4.8e+02      28      58 ..     466     496 ..     450     501 .. 0.84
   2 ?   -1.0   0.1      0.93   2.4e+03      46      59 ..     534     547 ..     523     548 .. 0.73
   3 ?    9.2   0.1   0.00058       1.5      21      66 ..     642     687 ..     636     688 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.19
         CLZ  28 eleekverLessLeaLqtrlarLlaeyessq 58 
                 e++e  +r ++ L++L+t+l+ L++  e+++
  CDO68202.1 466 ETDEWFDRQKGYLDSLETQLRGLVKSIEAVA 496
                 677778888999*********9999988876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.93
         CLZ  46 rlarLlaeyessqr 59 
                  ++rL +e++s+q+
  CDO68202.1 534 EVERLAQELQSTQA 547
                 47899999999886 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00058
         CLZ  21 kagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRit 66 
                  a+ eq+ +e+  ++Le+ L  +  r ++L++  e  q++L +R++
  CDO68202.1 642 VARFEQERIEDFKNSLEAFLHGMISRQKQLIKAWEGYQQTLLKRVA 687
                 566799**************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 4305.54
//
Query:       CDO68203.1  [L=431]
Description: hypothetical protein BN946_scf184938.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-62  212.1   0.0    1.7e-62  211.7   0.0    1.0  1  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.15   12.5   0.0        7.7    7.0   0.0    2.8  3  DUF3837   Domain of unknown function (DUF3837)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.7   0.0   1.9e-66   1.7e-62      34     441 ..       5     396 ..       2     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 211.7 bits;  conditional E-value: 1.9e-66
                 -SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHH CS
        p450  34 gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsfgkl.sleelveeeaedlveklr 130
                 g+++ lk+ +++v++++++ea+ e+l k++++ s+rp++++++    +++    +f+n+ ++w+++Rr l++++  +  l ++ +l  e+++dl+++l 
  CDO68203.1   5 GDVVYLKVLGQSVILVGSYEAACELLEKRSANYSDRPQSVMVNM---TNLDWIFVFKNYgAEWRRHRRELHNAFVPD-VLsRYYSLQLEITRDLLHNLL 99 
                 89***************************************997...8899899999999***************99.8889**************998 PP

                 CCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 131 kkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerre 229
                 ++  e      + ++  ++  vi ++++g      +d+k  +l++  +++ +  s++ + ++  fp ++ lp+++        kkl+   +k i + r+
  CDO68203.1 100 TNPAEF-----SGHIKFFFAAVIVRVVYGLDAA-HGDKKYYKLIERLATIAEDISTPGQHVVEAFPSMRRLPSWFPGAGF---KKLAASWRKEIADIRD 189
                 877666.....68888889999*********88.9*******************************99988888755554...4566666666666666 PP

                 CHCHCSCSSCS...HHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHH CS
        p450 230 tldsakksrrd...fldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyld 325
                  l ++  ++++   +++  +l+k    +e + ++e  +  + ++++aG dTt +    + + +a +Pevq+k + E+d v+g++r p+++d  +lpy+ 
  CDO68203.1 190 YLYES-AKEMMltsGVNESILTK--LTEE-QADEELARSLMATIYAAGGDTTNASAHAFVLAMAMYPEVQKKAQAELDAVVGQDRLPDFSDQRSLPYVS 284
                 66655.12222000333334443..2222.4555666777889******************************************************** PP

                 HHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHH CS
        p450 326 avikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmel 422
                 a +kE+LR h v+p+++p++   d   +gy+ip G+++i n +    dp+++p+Pe Fdp+RFl + +  + +  + ++  FG+G+R+C+G+++A+  l
  CDO68203.1 285 ALVKEVLRWHVVAPIGVPHRSVADDDYNGYFIPGGSIIIANQW----DPNHYPDPEAFDPDRFLLNGQlnP-NIRDPSSYVFGFGRRICPGRHFAEASL 378
                 *****************************************99....9999*************9988964.456666666****************** PP

                 HHHHHHHHHHEEEEESTST CS
        p450 423 klflatlLqnFevelqpet 441
                 ++ +a++L+ F++++ p +
  CDO68203.1 379 FITCASILHAFTISP-PLD 396
                 *************97.444 PP

>> DUF3837  Domain of unknown function (DUF3837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.032   2.8e+02       5      29 ..       3      27 ..       1      30 [. 0.88
   2 ?    7.0   0.0   0.00085       7.7      16      65 ..     100     149 ..      96     156 .. 0.92
   3 ?   -2.5   0.0      0.77   6.9e+03      68      79 ..     203     214 ..     180     236 .. 0.48

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.032
     DUF3837  5 iakqavkiKckfekailtgnyElay 29
                +a + v +K+  +  il+g yE+a+
  CDO68203.1  3 LAGDVVYLKVLGQSVILVGSYEAAC 27
                67788999***************99 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00085
     DUF3837  16 fekailtgnyElayalGllakllglpeieekeeleelkekleeelkkvsp 65 
                 +++a + g++ ++ a+ +++ ++gl+ ++ +++  +l e+l   ++++s+
  CDO68203.1 100 TNPAEFSGHIKFFFAAVIVRVVYGLDAAHGDKKYYKLIERLATIAEDIST 149
                 57799**************************************9999987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.77
     DUF3837  68 ekekklikllkd 79 
                   ++ +   l +
  CDO68203.1 203 GVNESILTKLTE 214
                 333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2904.70
//
Query:       CDO68204.1  [L=789]
Description: Glycosyltransferase Family 39 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-80  268.3  18.3    6.3e-80  268.3  18.3    1.6  2  PMT             Dolichyl-phosphate-mannose-protein mannosyltr
    8.6e-52  175.6   3.6    8.6e-52  175.6   3.6    3.9  3  PMT_4TMC        C-terminal four TMM region of protein-O-manno
      4e-16   59.4   0.1    6.2e-16   58.8   0.1    1.2  1  MIR             MIR domain
    1.1e-06   29.0  14.2    1.1e-06   29.0  14.2    2.5  4  PMT_2           Dolichyl-phosphate-mannose-protein mannosyltr
  ------ inclusion threshold ------
      0.052   14.1   0.1       0.13   12.9   0.1    1.6  1  TMEM135_C_rich  N-terminal cysteine-rich region of Transmembr


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.3  18.3   1.8e-83   6.3e-80       2     244 ..      61     306 ..      60     307 .. 0.98
   2 ?   -3.3   0.5       1.5   5.2e+03     184     205 ..     660     681 ..     659     707 .. 0.69

  Alignments for each domain:
  == domain 1  score: 268.3 bits;  conditional E-value: 1.8e-83
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 +lt la++ r+++++ p +vvfdevhfgkfas+Y+ +++++dvhppl+k+l++l+g++ g+dg+f fe+ig++y+ ++vpyv++R+++a+lgsl+vp+v
  CDO68204.1  61 LLTTLAFALRFYKINHPDQVVFDEVHFGKFASYYILRQYYFDVHPPLAKLLFGLAGWFVGYDGHFGFENIGDSYTEAHVPYVGMRALPAILGSLTVPIV 159
                 6899*********************************************************************************************** PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvllvgllli 197
                 y +++e gfs ++a l+a++vl++n+++++ r+illd++L+ff++l+myc+++f+  r++ fs  ww+wll+ g  ++++  +K +g++tv+ +g+ +i
  CDO68204.1 160 YAIMKECGFSTIVATLSAVIVLFDNAHVAQDRLILLDATLIFFMTLTMYCYIRFQklRYRDFSFDWWMWLLACGTFMAFTWASKVNGVLTVVAIGIAVI 258
                 *************************************************************************************************** PP

         PMT 198 welwqllgdkslllksi.vkhllaralaliviPvtlylavftvhfwll 244
                 ++lw  l  k++ + ++ + h++ara+a+iv+P+ lyl +f++h+ +l
  CDO68204.1 259 IDLWDILDIKKGHSLEYfWRHFAARAIAFIVLPIILYLSIFWIHLSIL 306
                 ********7777766667**************************9876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
         PMT 184 vglftvllvgllliwelwqllg 205
                  g+f++++++ ++++ l+ +++
  CDO68204.1 660 TGFFLLFWAVHYFPFFLMSRQL 681
                 5899999999999988877665 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.6      0.11   3.9e+02     153     181 ..     190     218 ..     166     222 .. 0.67
   2 ?   -1.0   0.3      0.31   1.1e+03     154     179 ..     272     303 ..     246     312 .. 0.50
   3 !  175.6   3.6   2.4e-55   8.6e-52       1     199 []     546     777 ..     546     777 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.11
    PMT_4TMC 153 kkklvklivvvvllvlviavFiffsplty 181
                  + ++  ++++++++l+++++i f +l y
  CDO68204.1 190 DRLILLDATLIFFMTLTMYCYIRFQKLRY 218
                 234667788999999*********99877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
    PMT_4TMC 154 k......klvklivvvvllvlviavFiffspl 179
                 +      + +++++++++l ++++  if+  l
  CDO68204.1 272 SleyfwrHFAARAIAFIVLPIILYLSIFWIHL 303
                 24455554444455555544444444444443 PP

  == domain 3  score: 175.6 bits;  conditional E-value: 2.4e-55
    PMT_4TMC   1 FlkkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallv...............fvllllalllrrqrg 84 
                 F+kkf+elq  ml++n++lt shpyaS p++Wp+l +gis+wt+++ +kqiy++G                             +++++la+l++r+r 
  CDO68204.1 546 FFKKFFELQILMLQHNAGLTASHPYASGPINWPFLISGISFWTQSDGQKQIYFIGXXXXXXXXXXXXXXxxxxxxxacvvgislYTGIMLADLVARRRD 644
                 9******************************************************99887776666666667777777777777*************** PP

    PMT_4TMC  85 vkdl.eeeetrllnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkk.................klvklivvvvl 165
                 v+ l e+ ++rllns++f+ll wa+hy+Pfflm+R+lflhhYlp++++++l+++ ++ f l s++ +++ +                  + + ++v+v+
  CDO68204.1 645 VEPLtEPVRHRLLNSTGFFLLFWAVHYFPFFLMSRQLFLHHYLPSHVASALVAGSVFSFAL-SESVNYPVSvwgprlrtpkkatyadlGMRGPVIVGVF 742
                 ****4455555*************************************************9.6666665668**************9999999****** PP

    PMT_4TMC 166 lvlviavFiffspltyGlpgts.eevkklkwlssW 199
                 ++++++ F++++pltyG+pg++ ++v+++++lssW
  CDO68204.1 743 ALAMFILFVYLAPLTYGTPGLDgHAVNARRLLSSW 777
                 *********************************** PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   1.7e-19   6.2e-16      10     185 ..     351     516 ..     344     517 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.7e-19
         MIR  10 RLfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd..awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqkevsay 106
                  + Hsh d+y+    + + +++ +++t y ++d +n+    W + + +    + rg+ + +++v+ l H++T+  L  ++   spl+ ++++ ++  ++
  CDO68204.1 351 VFLHSHPDRYPLKYDDGRISSQGQQVTGYGHEDTNNY----WQVIPTKALpeTGRGRVVANEDVIQLLHINTQTLLLTHDV-ASPLMPTNEEFTTWPKD 444
                 578********8888888888999*************....***99998744559**************************.*******9999999999 PP

         MIR 107 glegfegdnDkveifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedkealal 185
                 +l      n   ++f+++   g + +  ++++  +rl+Hv t+ +++++  +l+++  +  qq++  +k+ +dk a+++
  CDO68204.1 445 DLSRY---N--DTLFQLRLVDGYEGEPWKSKSGHFRLIHVPTKVAMWTHPKQLPDWAYK--QQEINGNKNIHDKTAIWF 516
                 99666...2..589*********************************************..************998887 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   5.2e+03      43      72 ..      45      74 ..      44      82 .. 0.66
   2 !   29.0  14.2     3e-10   1.1e-06      23     157 ..     143     293 ..     138     299 .. 0.82
   3 ?   -3.2   0.3       2.5   8.8e+03      34      46 ..     669     681 ..     657     706 .. 0.43
   4 ?   -3.3   0.3       2.6   9.4e+03      78      90 ..     740     752 ..     734     756 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
       PMT_2 43 arrlfgkraallaalllavvplfvalsalf 72
                +++l+ +  a ++++ l +++ f+   +++
  CDO68204.1 45 VEKLLETDQANVGMIALLTTLAFALRFYKI 74
                567777777888888888877777666643 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 3e-10
       PMT_2  23 airlvsalagvltilllyllarrl.fgkraallaalllavvplfvalsalftpdaplvllwalalylllrale.......knklkywllagvlfGlgfl 113
                 ++r ++a++g+lt+ ++y++++++ f++ +a l+a+++ +    va  +l+ +da+l+++++l++y+++r+ +        + + ++l++g ++++   
  CDO68204.1 143 GMRALPAILGSLTVPIVYAIMKECgFSTIVATLSAVIVLFDNAHVAQDRLILLDATLIFFMTLTMYCYIRFQKlryrdfsFDWWMWLLACGTFMAFTWA 241
                 689999*****************8789***************9*****************************97665332233555599999******* PP

       PMT_2 114 sKytaallliaallyllis........arrilkekkpyl.alllalllfspvl 157
                 sK + +l ++a+ ++++i+        +++ l  ++ ++ a ++a++ ++p++
  CDO68204.1 242 SKVNGVLTVVAIGIAVIIDlwdildikKGHSLEYFWRHFaARAIAFI-VLPII 293
                 **********9999998887555555444466668888844444444.44654 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.5
       PMT_2  34 ltilllyllarrl 46 
                 + ++ ++l+ r+l
  CDO68204.1 669 VHYFPFFLMSRQL 681
                 2222222222222 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.6
       PMT_2  78 lvllwalalylll 90 
                  v+++a+++++++
  CDO68204.1 740 GVFALAMFILFVY 752
                 3344444444443 PP

>> TMEM135_C_rich  N-terminal cysteine-rich region of Transmembrane protein 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.7e-05      0.13      27     103 ..     623     700 ..     615     710 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
  TMEM135_C_rich  27 leeslkiyaplyliaavlrrrkidyklkklvkeilrsas.fltanaalvlvlfcllrrllGklysslvGfgaaliasy 103
                       +++ +y+++ l   v rrr ++   + + + +l+s+  fl + a+ ++ +f ++r+l  + y+ +    a + +s 
      CDO68204.1 623 CVVGISLYTGIMLADLVARRRDVEPLTEPVRHRLLNSTGfFLLFWAVHYFPFFLMSRQLFLHHYLPSHVASALVAGSV 700
                     568999*****9887777777555445555567888887368999**************9999987766555555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 4818.81
//
Query:       CDO68205.1  [L=503]
Description: hypothetical protein BN946_scf184938.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-39  133.0   4.3    2.1e-07   31.5   0.1    8.0  8  WD40         WD domain, G-beta repeat
    1.5e-14   54.0   0.0      0.042   14.1   0.0    6.1  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    3.3e-13   48.9   2.4    3.3e-13   48.9   2.4    1.7  2  PRP4         pre-mRNA processing factor 4 (PRP4) like
     0.0005   19.1   0.0        2.6    6.9   0.0    3.8  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0033   16.8   0.0       0.74    9.1   0.0    3.3  4  WD40_like    WD40-like domain
  ------ inclusion threshold ------
      0.033   13.5   0.0         14    4.9   0.0    3.2  3  Nbas_N       Neuroblastoma-amplified sequence, N terminal
      0.045   12.4   1.4          8    5.0   0.0    3.6  5  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.6e-07   0.00092      16      38 .]     171     193 ..     157     193 .. 0.90
   2 !   12.3   0.0   9.8e-05      0.25       2      24 ..     198     221 ..     197     240 .. 0.76
   3 !   28.9   0.0   5.6e-10   1.4e-06       2      38 .]     244     281 ..     243     281 .. 0.92
   4 !   15.3   0.0   1.1e-05     0.027       8      38 .]     292     323 ..     283     323 .. 0.89
   5 !   31.5   0.1     8e-11   2.1e-07       5      38 .]     331     365 ..     327     365 .. 0.92
   6 ?   -0.1   0.0      0.79     2e+03       4      18 ..     372     387 ..     369     396 .. 0.82
   7 !    7.5   0.0    0.0032       8.1      21      38 .]     439     456 ..     437     456 .. 0.85
   8 !    9.9   0.0   0.00056       1.4       1      33 [.     460     493 ..     460     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.6e-07
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                 ++fsp++++l++Gs+ g+v++W+
  CDO68205.1 171 VRFSPNSKYLLTGSWSGNVKLWN 193
                 56********************8 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.8e-05
                 EEEEEEESSSS.EEEEEEETTSSE CS
        WD40   2 qclrtltGHss.vtslafspdgaw 24 
                 +++rt++GH++ v ++a++p+ + 
  CDO68205.1 198 TPVRTYRGHNDrVGGVAWHPEATK 221
                 689******666*******99775 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 5.6e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ t +GH + +  +af+p+g+++as+s D t r+Wd
  CDO68205.1 244 TPIATMKGHaDRIARVAFHPSGKYVASASFDTTWRLWD 281
                 578999***666****************99*******9 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 1.1e-05
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +GH + v s+ f+ dga+ asG+ D   r+Wd
  CDO68205.1 292 EGHsKEVFSIEFQNDGALCASGGLDAIGRVWD 323
                 5**888*************************9 PP

  == domain 5  score: 31.5 bits;  conditional E-value: 8e-11
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +l+GH + + +++fsp+g  +a+Gs D t+riWd
  CDO68205.1 331 MVLDGHvQAIFGISFSPNGYQIATGSGDDTIRIWD 365
                 6799**999****************99*******9 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.79
                 EEEEESS.SSEEEEEE CS
        WD40   4 lrtltGH.ssvtslaf 18 
                 l+t+ +H s+v++++f
  CDO68205.1 372 LYTIPAHmSNVSDVRF 387
                 78889**999***954 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.0032
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 +g ++as+++Dg v++W+
  CDO68205.1 439 SGLYFASAGYDGFVKLWS 456
                 5668899999*******5 PP

  == domain 8  score: 9.9 bits;  conditional E-value: 0.00056
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgt 33 
                 +q+lrtl +  + v s++ s+dg++lasG+++++
  CDO68205.1 460 WQLLRTLPTDgGKVMSVDLSHDGRMLASGTYNRN 493
                 6889999877445****************97776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.27   6.9e+02      41      64 ..      29      52 ..      18      68 .. 0.79
   2 !    9.4   0.0   0.00051       1.3      32      90 ..     151     216 ..     114     218 .. 0.79
   3 !   12.1   0.0   7.1e-05      0.18      35      90 ..     250     304 ..     237     306 .. 0.87
   4 !    5.6   0.0    0.0074        19      35      75 ..     292     332 ..     288     339 .. 0.88
   5 !   14.1   0.0   1.7e-05     0.042      29      87 ..     321     385 ..     318     390 .. 0.78
   6 ?    1.0   0.0      0.21   5.3e+02      46      81 ..     435     471 ..     421     475 .. 0.77
   7 !    7.7   0.0    0.0017       4.3      26      65 ..     460     497 ..     443     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.27
  ANAPC4_WD40 41 vrsLaWkpdgklLavaysdgevrl 64
                   +L+ k++ + Lav ++d++v+ 
   CDO68205.1 29 LDELERKKKARTLAVPTDDNKVKQ 52
                 55788899999*********9985 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00051
  ANAPC4_WD40  32 l........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                           ++ ++++ v+ ++++p+ k L  +   g+v+l ++ + + v++++ +++ +v  + W 
   CDO68205.1 151 EvkrfaelgSQIGDERPVSLVRFSPNSKYLLTGSWSGNVKLWNVPQCTPVRTYRGHND-RVGGVAWH 216
                  34555555666778899************************************99998.58888885 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 7.1e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++  ++  +a++p+gk  a a  d++ rl d++++k +   + +s++ v +++++
   CDO68205.1 250 KGHADRIARVAFHPSGKYVASASFDTTWRLWDVNTQKELLLQEGHSKE-VFSIEFQ 304
                  56778999*****************************99888888774.8888887 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0074
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +++++ev s+++++dg l a +  d   r+ d  +g++   
   CDO68205.1 292 EGHSKEVFSIEFQNDGALCASGGLDAIGRVWDLRTGRTAMV 332
                  67899***************************999998765 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 1.7e-05
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  vw+l         d++ + + +++++p+g  +a +  d ++r+ d+ s k + +++++ ++ v+ +
   CDO68205.1 321 VWDLrtgrtamVLDGHVQAIFGISFSPNGYQIATGSGDDTIRIWDMRSLKALYTIPAHMSN-VSDV 385
                  55555555333334556677799********************************999884.7666 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.21
  ANAPC4_WD40  46 Wk.pdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  W+  +g  +a a  dg v+l +a + +++++l+++  
   CDO68205.1 435 WRyRSGLYFASAGYDGFVKLWSADDWQLLRTLPTDGG 471
                  54236888999**************999999987655 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0017
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  +q + tl  ++++++v s+  ++dg++La ++ + + +l+
   CDO68205.1 460 WQLLRTL--PTDGGKVMSVDLSHDGRMLASGTYNRNFQLF 497
                  5555555..8999******************999888876 PP

>> PRP4  pre-mRNA processing factor 4 (PRP4) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   2.4   1.3e-16   3.3e-13       1      26 [.      50      75 ..      50      78 .. 0.96
   2 ?   -2.6   0.1       1.6   4.1e+03      18      25 ..     251     258 ..     251     258 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.3e-16
        PRP4  1 VrrrLRelGEPitLFGEthadRreRL 26
                V++rLRelGEPitLFGE++ dRr+RL
  CDO68205.1 50 VKQRLRELGEPITLFGERPPDRRDRL 75
                89***********************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
        PRP4  18 thadRreR 25 
                 +hadR  R
  CDO68205.1 251 GHADRIAR 258
                 69***998 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.22   5.7e+02     189     218 ..     167     196 ..     145     225 .. 0.79
   2 !    6.9   0.0     0.001       2.6     168     220 ..     233     286 ..     213     296 .. 0.85
   3 !    5.5   0.0    0.0028       7.3     182     216 ..     331     366 ..     316     372 .. 0.84
   4 ?    1.3   0.0     0.053   1.3e+02     267     283 ..     450     466 ..     424     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.22
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvyl 218
                  ++   fsp+   l t s  G vk++ v +
  CDO68205.1 167 PVSLVRFSPNSKYLLTGSWSGNVKLWNVPQ 196
                 566678999999999999999999999855 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.001
    Ge1_WD40 168 gsgelsveeieegllkieehs.liveaafspdGtalatasedGevkffqvyled 220
                 g  +l v+  e+ +  ++ h+  i   af p G  +a as d + +++ v+ ++
  CDO68205.1 233 GAADLAVNLCETPIATMKGHAdRIARVAFHPSGKYVASASFDTTWRLWDVNTQK 286
                 56677888888888999999889**************************99765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0028
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevkffqv 216
                 + ++ h   i   +fsp+G  +at s d +++ + +
  CDO68205.1 331 MVLDGHVqAIFGISFSPNGYQIATGSGDDTIRIWDM 366
                 5566675489999*******************9976 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.053
    Ge1_WD40 267 selklWscelWtClqti 283
                   +klWs++ W+ l+t+
  CDO68205.1 450 GFVKLWSADDWQLLRTL 466
                 45899999999999997 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.46   1.2e+03       6      43 ..     171     208 ..     167     211 .. 0.84
   2 ?    3.4   0.0     0.016        41       2      40 ..     297     335 ..     296     341 .. 0.88
   3 !    9.1   0.0   0.00029      0.74       3      42 ..     340     379 ..     338     393 .. 0.84
   4 ?   -1.1   0.0      0.36   9.3e+02       3      28 ..     473     498 ..     472     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.46
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsivesfed 43 
                 + +s++++++l G+ + ++++ ++++ + v    + +d
  CDO68205.1 171 VRFSPNSKYLLTGSWSGNVKLWNVPQCTPVRTYRGHND 208
                 67899****************99999988877766666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsives 40 
                 e++si+++++g l + Gg d   +v +l+++ +  ++++
  CDO68205.1 297 EVFSIEFQNDGALCASGGLDAIGRVWDLRTGRTAMVLDG 335
                 9*****************************998887766 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00029
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfe 42 
                 i+ i +s++g  i+ G+ dd++++ +++sl+  + +    
  CDO68205.1 340 IFGISFSPNGYQIATGSGDDTIRIWDMRSLKALYTIPAHM 379
                 899***************************9988776555 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.36
   WD40_like   3 iYsidiskkgslilyGgkddkctvlk 28 
                 + s+d+s++g +++ G  + + ++++
  CDO68205.1 473 VMSVDLSHDGRMLASGTYNRNFQLFT 498
                 679*************9999888775 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.034        87     227     262 ..     163     198 ..     141     218 .. 0.76
   2 ?    2.1   0.0     0.039        99     227     262 ..     251     286 ..     222     300 .. 0.87
   3 ?    4.9   0.0    0.0053        14     230     263 ..     338     371 ..     321     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.034
      Nbas_N 227 eekdgvfkmslspdgtllavihfsgklsiwdipslk 262
                  ++  v  + +sp+   l +  +sg++ +w++p   
  CDO68205.1 163 GDERPVSLVRFSPNSKYLLTGSWSGNVKLWNVPQCT 198
                 445567778899*********************865 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.039
      Nbas_N 227 eekdgvfkmslspdgtllavihfsgklsiwdipslk 262
                    d + ++++ p g  +a   f     +wd+ + k
  CDO68205.1 251 GHADRIARVAFHPSGKYVASASFDTTWRLWDVNTQK 286
                 5679999************************98766 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0053
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 + +f +s+sp+g  +a+      + iwd+ slk 
  CDO68205.1 338 QAIFGISFSPNGYQIATGSGDDTIRIWDMRSLKA 371
                 579***************9999*********995 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.076   1.9e+02     228     255 ..     173     202 ..     167     235 .. 0.79
   2 ?    5.0   0.0    0.0031         8     231     253 ..     266     288 ..     247     299 .. 0.86
   3 ?   -1.7   0.0      0.33   8.4e+02     243     256 ..     320     333 ..     315     347 .. 0.88
   4 ?    2.6   0.0     0.016        41     233     256 ..     352     375 ..     336     386 .. 0.84
   5 ?   -3.9   0.0       1.5   3.9e+03     239     255 ..     449     465 ..     444     469 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.076
                 ...TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkclat 255
                    +++yl++ s  g++++Wn+   ++++t
  CDO68205.1 173 FspNSKYLLTGSWSGNVKLWNVPQCTPVRT 202
                 344899****************87777776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0031
                 TEEEEEETT-EEEEEETTTTEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkcl 253
                 +y++++s d + r+W+++t+k l
  CDO68205.1 266 KYVASASFDTTWRLWDVNTQKEL 288
                 79*****************9976 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.33
                 EEEETTTTEEEEEE CS
      Nup160 243 rvWnlltgkclati 256
                 rvW+l+tg+++++ 
  CDO68205.1 320 RVWDLRTGRTAMVL 333
                 9*******998875 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.016
                 EEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkclati 256
                 +++ s d ++r+W+ +++k l+ti
  CDO68205.1 352 IATGSGDDTIRIWDMRSLKALYTI 375
                 5667889***************97 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 1.5
                 T-EEEEEETTTTEEEEE CS
      Nup160 239 dgkLrvWnlltgkclat 255
                 dg++++W+ ++ ++l+t
  CDO68205.1 449 DGFVKLWSADDWQLLRT 465
                 999*****999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3322.97
//
Query:       CDO68206.1  [L=362]
Description: hypothetical protein BN946_scf184938.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.7   0.3      0.057   13.3   0.3    1.8  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   3.2e-06     0.057       2      38 ..      61     108 ..      60     112 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-06
  F-box-like   2 srLPdEiLlqIFs..yLpps..d......Llr.lalVCrrWrrvaldt 38 
                 +rLP EiL +I +  +L+    d      L + l+lV r +r+++l+t
  CDO68206.1  61 NRLPLEILYEIIQaaWLDVPlfDalgrwsLFSrLSLVNRTFRELTLRT 108
                 79**********644333222233444446666***********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2407.05
//
Query:       CDO68207.1  [L=844]
Description: hypothetical protein BN946_scf184938.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-12   47.6   1.0    1.7e-06   28.5   0.2    4.5  4  Ank_4         Ankyrin repeats (many copies)
    1.7e-10   41.3   2.0    0.00012   22.6   0.2    3.2  2  Ank_2         Ankyrin repeats (3 copies)
    3.9e-09   36.0   2.4      0.076   13.6   0.0    4.3  4  Ank_3         Ankyrin repeat
    6.4e-08   32.7   4.8     0.0096   16.2   0.1    4.0  4  Ank_5         Ankyrin repeats (many copies)
    4.6e-06   26.8   8.2     0.0086   16.5   0.3    3.7  3  Ank           Ankyrin repeat
    0.00016   21.5   0.1     0.0043   16.9   0.1    2.4  1  KilA-N        KilA-N domain
     0.0045   15.4   0.7     0.0066   14.9   0.7    1.1  1  MAD           Mitotic checkpoint protein
  ------ inclusion threshold ------
       0.03   13.9   1.6       0.05   13.2   1.6    1.2  1  Filament      Intermediate filament protein
      0.067   12.7   0.2       0.12   11.9   0.2    1.3  1  Exonuc_VII_L  Exonuclease VII, large subunit
       0.15   11.6   0.9       0.26   10.9   0.9    1.3  1  Phage_GPO     Phage capsid scaffolding protein (GPO) serine p
       0.25   11.5   5.4       0.68   10.1   5.4    1.7  1  ATG16         Autophagy protein 16 (ATG16)
          2    8.8   6.6        3.6    7.9   6.6    1.4  1  OmpH          Outer membrane protein (OmpH-like)
        5.1    7.1   6.4        1.3    9.0   2.4    2.0  2  DUF1043       Protein of unknown function (DUF1043)
        6.9    5.9   9.2          8    5.7   6.1    2.1  2  DUF3450       Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.7   3.4e+03      25      46 ..     328     349 ..     322     359 .. 0.68
   2 !   28.5   0.2   1.3e-09   1.7e-06       2      46 ..     382     425 ..     381     437 .. 0.91
   3 !    9.7   0.1     0.001       1.3       6      55 .]     456     521 ..     451     521 .. 0.65
   4 ?    4.1   0.0     0.056        72      21      46 ..     750     775 ..     730     777 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.7
       Ank_4  25 adinaq..dnrsGetalhiAakrg 46 
                  d+na   d+r  +ta++ A++  
  CDO68207.1 328 LDPNAParDPR--RTAVIQAIYAR 349
                 56666633444..89999999876 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.3e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 +taLh a +  r+ +v+ L+e gad+++  n +Get+l++A++  
  CDO68207.1 382 HTALHLASSTARHSTVAALIEAGADVHRG-NYNGETPLIRACLAT 425
                 79**************************8.************765 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.001
       Ank_4   6 hyaai....sgrlelvrlLl........ek.gad....inaqdnrsGetalhiAakrgnveilklLl 55 
                 h+ a+    +gr  ++r+ l        ++  ad    i+ q ++ G+tal iAa+ gn   ++ Ll
  CDO68207.1 456 HHIAAsagvKGRATAARYYLdqinlwivNNeQADfksiIDIQ-DEHGDTALNIAARVGNRGLVRALL 521
                 555555666666666666663333333422233366679999.999*************99999997 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.056
       Ank_4  21 lekgadinaqdnrsGetalhiAakrg 46 
                 l++g+ ++++d  sG++al  Aa+rg
  CDO68207.1 750 LCTGVPVDKVDEVSGWSALVGAAWRG 775
                 469*******99*******9999998 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   9.1e-08   0.00012      20      65 ..     371     426 ..     322     448 .. 0.77
   2 !   16.4   0.7   7.7e-06    0.0099      25      78 ..     450     526 ..     408     531 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.1e-08
       Ank_2  20 adpn...k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsgh 65 
                 +d++   + +g+taLh+A +   + +v +L+e+       +++g+tpL+ A+  +h
  CDO68207.1 371 SDIDlvlDeQGHTALHLASSTARHSTVAALIEAgadvhrGNYNGETPLIRACLATH 426
                 45555443699999999999887788999999664444555999999999998876 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 7.7e-06
       Ank_2  25 ngktaLh.yAakngnl...eivklLleh...................adndgrtpLhyAarsghleivklLlekgad 78 
                   +++ h +Aa++g +    ++++ l++                   +d++g t+L +Aar g+  +v+ Ll+ ga+
  CDO68207.1 450 ARRSVFHhIAASAGVKgraTAARYYLDQinlwivnneqadfksiidiQDEHGDTALNIAARVGNRGLVRALLDAGAN 526
                 446777768888764332155899998555666555665555665544588*********99999*******98876 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     6e-05     0.076       2      30 ..     381     408 ..     380     409 .. 0.95
   2 ?    5.8   0.1      0.02        26       1      15 [.     413     427 ..     413     445 .. 0.79
   3 ?   -1.6   0.0       5.4     7e+03       4      23 ..     453     476 ..     451     481 .. 0.60
   4 !   13.4   0.1   7.1e-05      0.09       1      28 [.     500     526 ..     500     528 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G t+LhlA + ++++ v +L+e  gadv+
  CDO68207.1 381 GHTALHLASSTARHSTVAALIE-AGADVH 408
                 89************99******.9***97 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.02
       Ank_3   1 nGetpLhlAarsgnl 15 
                 nGetpL +A++++++
  CDO68207.1 413 NGETPLIRACLATHC 427
                 7***********998 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 5.4
       Ank_3   4 tpLh.lAarsgnl...eivkfLle 23 
                 + +h +Aa++g     + +++ l+
  CDO68207.1 453 SVFHhIAASAGVKgraTAARYYLD 476
                 566647777775544334666665 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 7.1e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G t+L +Aar gn  +v++Ll+  ga+
  CDO68207.1 500 HGDTALNIAARVGNRGLVRALLD-AGAN 526
                 699********************.7886 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.014        18      11      32 ..     376     398 ..     369     399 .. 0.80
   2 !   10.2   0.1   0.00059      0.75       1      27 [.     400     426 ..     400     429 .. 0.88
   3 ?   -2.3   0.0         5   6.4e+03      24      36 ..     462     475 ..     436     477 .. 0.63
   4 !   16.2   0.1   7.5e-06    0.0096      10      49 ..     495     534 ..     488     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.014
       Ank_5  11 rldgggntpLhvAak.ygaadvv 32 
                  ld+ g t+Lh+A++ +++++v+
  CDO68207.1 376 VLDEQGHTALHLASStARHSTVA 398
                 4566777********99999986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00059
       Ank_5   1 LlehgpadvnrldgggntpLhvAak.yg 27 
                 L+e+g adv r + +g+tpL+ A+   +
  CDO68207.1 400 LIEAG-ADVHRGNYNGETPLIRACLaTH 426
                 899**.******************8555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5
       Ank_5  24 ak.ygaadvvrlLl 36 
                 a  +g+a+ +r++l
  CDO68207.1 462 AGvKGRATAARYYL 475
                 34457777777776 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 7.5e-06
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 + +d++g t+L++Aa+ g+  +vr Ll+ ga++ l ++ G
  CDO68207.1 495 DIQDEHGDTALNIAARVGNRGLVRALLDAGANRLLANKLG 534
                 57888888*******************9999988877765 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   6.8e-06    0.0086       2      28 ..     381     408 ..     380     412 .. 0.88
   2 ?    2.4   0.1      0.19   2.4e+02       1      11 [.     413     425 ..     413     447 .. 0.78
   3 !   11.0   0.3   0.00036      0.46       1      26 [.     500     526 ..     500     532 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.8e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G+T+LHlA++ + ++ + +L+  GA+++
  CDO68207.1 381 GHTALHLASSTARHSTVAALIeAGADVH 408
                 9********888888******88***97 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.19
                 TSBBHHHHHH..H CS
         Ank   1 dGnTPLHlAa..t 11 
                 +G TPL +A+  t
  CDO68207.1 413 NGETPLIRAClaT 425
                 79*******9541 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00036
                 TSBBHHHHHH...HHTTHHHHHHHH.TTTS CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.hGAn 26 
                 +G+T+L +Aa   +      +++LL  GAn
  CDO68207.1 500 HGDTALNIAArvgN---RGLVRALLdAGAN 526
                 69********5555...55******66**9 PP

>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.3e-06    0.0043       9      93 ..      36     101 ..      30     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.3e-06
      KilA-N   9 iirrvkdgyinatkllkaaaedtkriddWlrnkstkelleeleedynisekkksektisenrkakpgrlqGtYvhpdlalava.sW 93 
                 ++rr+ d y+nat++lk a+ d+ r +++l+++     +e+++  y                    g++qGt+++ +   ++a ++
  CDO68207.1  36 VMRRRADSYVNATQILKVAGVDKGRRTKILEKEILPGKHEIVQGGY--------------------GKYQGTWIPLERGRDIAlQY 101
                 678888*************877888788888888877777777664....................55788888887777777555 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   5.1e-06    0.0066      81     181 ..     550     647 ..     541     655 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.1e-06
         MAD  81 kkknlealnkkekekesklaearevisalknelaelkrqiekqelelsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrikeLefei 179
                   ++++ l+++ +  +  l++ ++vi+ ++  ++ l ++      e+++k+ +l   q +l    ++lse  ++iqq+++++ el +  qr+++Le  +
  CDO68207.1 550 SARSEDILSSLRSGPSIPLQKSQDVITDITSMIQGLGQEF---AAEVKTKQDQLDVTQAHLRAATRELSEQRKQIQQWQSRCGELDQMTQRVRNLEKTL 645
                 5667777777777777778888888888888888887766...5799*************************************************988 PP

         MAD 180 qs 181
                 + 
  CDO68207.1 646 AD 647
                 75 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.6   3.9e-05      0.05     189     250 ..     585     649 ..     575     658 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHH CS
    Filament 189 aeewykskleelqeaaeknsealrsakeeitelrrqiqslei...eleslkkqkasleaqlaele 250
                 + + + + +++ q++ +  +++lr+a +e++e r+qiq+ ++   el+++ +  ++le++la+ +
  CDO68207.1 585 LGQEFAAEVKTKQDQLDVTQAHLRAATRELSEQRKQIQQWQSrcgELDQMTQRVRNLEKTLADED 649
                 567899999999*************************987654449**************99865 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   9.3e-05      0.12     179     257 ..     565     646 ..     487     654 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-05
  Exonuc_VII_L 179 kspeellerkrqrldeleerleralkkqlkkkrerleelkerlk...ekleekkerlkklkerlelleekkerleeleekle 257
                   + p ++ ++    ++++ + l ++ + ++k+k+ +l+ ++++l+   ++l+e++++++++++r  +l++ ++r+++le++l+
    CDO68207.1 565 SIPLQKSQDVITDITSMIQGLGQEFAAEVKTKQDQLDVTQAHLRaatRELSEQRKQIQQWQSRCGELDQMTQRVRNLEKTLA 646
                   4455555566666777778888888888999999999988888557888888888889998888889999999999888876 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   0.00021      0.26     174     264 ..     571     662 ..     561     668 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
   Phage_GPO 174 geslferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktda.kekqrpeatGe 264
                 ++++++ i++++++  ++  a+++  ++ ++ + +++++++ +++++ ++ ++ ++   e++++++++++L+++L  +d+ + + r e  G+
  CDO68207.1 571 SQDVITDITSMIQGLGQEFAAEVKTKQDQLDVTQAHLRAATRELSEQRKQIQQWQSRCGELDQMTQRVRNLEKTLADEDNfDWTGRTELDGT 662
                 46788999999999999999999999999999999999999999999999999999999********************9888889888884 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.4   0.00053      0.68      98     159 ..     587     648 ..     577     650 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00053
       ATG16  98 gelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDE 159
                 +e+a  +++++++l++ ++ l++ +++l e ++++++ + ++ ++++  +  ++l ++l DE
  CDO68207.1 587 QEFAAEVKTKQDQLDVTQAHLRAATRELSEQRKQIQQWQSRCGELDQMTQRVRNLEKTLADE 648
                 68999*****************************************9999999999999998 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.6    0.0028       3.6      19      91 ..     577     639 ..     568     651 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  19 aaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqell 91 
                 ++ + ++   ++++ae+++k+++l+  q+ l +++++l          ++++++qq  q + +el +  q ++
  CDO68207.1 577 DITSMIQGLGQEFAAEVKTKQDQLDVTQAHLRAATREL---------SEQRKQIQQ-WQSRCGELDQMTQRVR 639
                 45556666777777777777777777777776555443.........333333333.2222233333332222 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.2   5.4e+03      31      55 ..     438     462 ..     430     464 .. 0.79
   2 ?    9.0   2.4     0.001       1.3      22      76 ..     596     649 ..     583     651 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.2
     DUF1043  31 kelekakaeleeqkqeledHfaqsa 55 
                 + l ++  +l++ ++ + +H+a sa
  CDO68207.1 438 AALHASIRTLDTARRSVFHHIAASA 462
                 5677777889999999999999987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
     DUF1043  22 klkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlakss 76 
                 k  + + +++ l +a+ el+eq+++++++ ++  e L++++++ ++L + la + 
  CDO68207.1 596 KQDQLDVTQAHLRAATRELSEQRKQIQQWQSRCGE-LDQMTQRVRNLEKTLADED 649
                 44455567899*****************9999888.7************999765 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.26   3.3e+02     185     231 ..     466     512 ..     464     519 .. 0.84
   2 ?    5.7   6.1    0.0062         8      34     100 ..     570     640 ..     567     649 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.26
     DUF3450 185 GrvalyyqtlDgkeagawdqetkqWqaldssyrseirkairiarkqa 231
                 Gr+ +    lD+ ++++ ++e+  ++ + + + +  + a++ia +  
  CDO68207.1 466 GRATAARYYLDQINLWIVNNEQADFKSIIDIQDEHGDTALNIAARVG 512
                 899999999*****************988888888888888887765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0062
     DUF3450  34 qsqkkidklddekqellaey....ralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvp 100
                 +sq  i++++   q l +e+    ++ +++l+ +++  +  +r +++q+++i++ + +  e++++ +++  
  CDO68207.1 570 KSQDVITDITSMIQGLGQEFaaevKTKQDQLDVTQAHLRAATRELSEQRKQIQQWQSRCGELDQMTQRVRN 640
                 66666666666666555554100055555555555555566677888888888888899999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      870  (0.0485247); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 5273.61
//
Query:       CDO68208.1  [L=689]
Description: hypothetical protein BN946_scf184938.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-15   56.1   0.0    5.6e-15   55.3   0.0    1.4  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   3.1e-19   5.6e-15      19     112 ..     249     334 ..     234     335 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.1e-19
                 EEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  19 hsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                 ++y +ye++   g    +v RrYs+F+ L + L +++p + +PplP+k++       de f+e+r++gL+++++ ++nhp++  + vl  FL++
  CDO68208.1 249 NRYLVYEISSDRG---ASVPRRYSEFVFLWDVLVKRYPFRLLPPLPPKRIGP-----DEGFLEQRKRGLTRFINFVVNHPVIKDDGVLAAFLTE 334
                 6789999999987...9********************************765.....6**********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4831.27
//
Query:       CDO68209.1  [L=150]
Description: hypothetical protein BN946_scf184938.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1015.47
//
Query:       CDO68210.1  [L=268]
Description: hypothetical protein BN946_scf184938.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-23   81.1   0.0    7.6e-23   80.7   0.0    1.1  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
       0.25   10.0   2.0       0.31    9.7   2.0    1.1  1  Med15            ARC105 or Med15 subunit of Mediator complex 


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   8.5e-27   7.6e-23       1     107 [.     135     241 ..     135     243 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 8.5e-27
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w+k +a ++ lI+++i dsl+ +++ + ta+++W++L++++e ks++  + lr++l + k++++++v+ h++k++ + ++L+a+g+  +d+d  
       CDO68210.1 135 WRKGEANVKQLIASTIPDSLFMKIRAKPTARAIWEALAQEFECKSRMVSVDLRRRLQEQKCSDKDDVRVHFAKMRAMREDLAAMGQSPSDDDFF 228
                      8999****************************************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyet 107
                      ++++ s+P+sye 
       CDO68210.1 229 AIIMGSMPSSYEP 241
                      ***********95 PP

>> Med15  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.0   3.5e-05      0.31     101     278 ..      48     221 ..      34     231 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 3.5e-05
       Med15 101 apvgvgpgapsgaqmggpgtasnllaslsraqmava.gagfpsqdsrvarmqqggqaagvmqqsiqqqqsttpnqmganqgsaqgqavgknqgqqapvg 198
                 a  ++ p+a+ +++   +gta+        + +a + ++++  +  ++++++ g+++ag+  +  +++++ +  ++ a+  +   q+  +   ++   g
  CDO68210.1  48 AREPIAPQATAAQAVTAAGTAA--------PGAAAGpTMAGGDAGAAAGGTGSGAGTAGPVGGAAGAGGTLEAAAPAAGVTPDPTQVAYEADLAEWRKG 138
                 5557778888888888888877........444444455556677777788888888888878888887777777777777777777766666777777 PP

       Med15 199 sqqPsqmgapiml...gyagngqmqgpngqgggaggnnqqnplvqtrlqaqlqnqqkqqldqvrgpadaqaqmqqqaqanagm 278
                 + + +q++a++ +     +   ++  +   +  a+  + +  +v   l+ +lq q+  + d vr++      m +   a ++ 
  CDO68210.1 139 EANVKQLIASTIPdslFMKIRAKPTARAIWEALAQEFECKSRMVSVDLRRRLQEQKCSDKDDVRVHFAKMRAMREDLAAMGQS 221
                 77777777777763322222333333444455566666677777777777777777777777777776666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1854.32
//
Query:       CDO68211.1  [L=805]
Description: hypothetical protein BN946_scf184913.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-85  286.0   0.0    1.1e-84  284.6   0.0    1.7  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain
    6.2e-71  237.7   0.0    1.2e-70  236.8   0.0    1.5  1  Spermine_synth   Spermine/spermidine synthase domain
      4e-24   84.2   0.1    8.9e-24   83.1   0.1    1.6  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
    6.2e-23   81.5   2.2      2e-22   79.8   0.3    2.2  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    1.6e-06   28.2   0.1    2.4e-05   24.4   0.1    2.6  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    2.3e-05   25.0   0.0    0.00016   22.3   0.0    2.5  3  Methyltransf_25  Methyltransferase domain
    0.00054   20.7   0.1     0.0041   17.8   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
     0.0061   17.2   0.0        0.9   10.2   0.0    3.1  3  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.055   14.1   0.1       0.15   12.7   0.1    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.082   12.8   0.2       0.18   11.7   0.2    1.6  1  NAD_binding_10   NAD(P)H-binding
       0.15   12.0   0.0       0.31   11.0   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
       0.17   11.5   0.0       0.38   10.3   0.0    1.6  1  MTS              Methyltransferase small domain
       0.18   10.9   0.0       0.32   10.0   0.0    1.3  1  DREV             DREV methyltransferase


Domain annotation for each model (and alignments):
>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.6   0.0   8.3e-88   1.1e-84       1     258 [.     431     739 ..     431     741 .. 0.93

  Alignments for each domain:
  == domain 1  score: 284.6 bits;  conditional E-value: 8.3e-88
                   BTTTBHHHHHHHHHHHCCCHTTBECCCCCCCCCCCCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TCEEECCCCCEEC CS
  Sacchrp_dh_C   1 GldPGidhllamkaidevkakggkiesflsycgglpapeasdnplgYkfsWspegvlreltnpakvlengqvkevpgsellkgakkpiyilpglsle 97 
                   GldPG+dhl+a+k+idev+akggki++f s+cgglpape+sdnplgYkfsWs +g+l++l+n+a++l +g+++ v g++l++ a kp+yi p+++++
    CDO68211.1 431 GLDPGVDHLYAIKTIDEVHAKGGKIREFHSFCGGLPAPECSDNPLGYKFSWSARGALLALLNNASYLADGKQVDVQGKDLMNVA-KPYYITPAFAFV 526
                   9********************************************************************************844.8****99***** PP

                   TTECEEECTHCHHHHHHC.SCSEEEEEEEEEHHHHHHHHHHHTTT--SCEC..C.........................................CC CS
  Sacchrp_dh_C  98 gypnrdslpyeelyglpeaktlfrgtlrypgfsellkslkelGllseepke..e.........................................al 151
                   gypnr+s+p++e+y++pea+t++rgtlry+gf+e++k+l+ lG+l+ e+ke  +                                         ++
    CDO68211.1 527 GYPNRNSVPFREYYNIPEAHTVVRGTLRYQGFPEFIKTLVALGWLNLEKKEwlKegltwaqvmqqaigaadasestlvarvkeicqfpnesearrII 623
                   ************************************************97755389***********************999999999999999966 PP

                   CC..HH....ST..T..C.EHHHHHHHHCCHHCCCCTTEEEEEEEEEEEEEE.TTSEEEEEEEEEEEEE.EHHSSSHHHHHHHHHHHHHHHHHHTTS CS
  Sacchrp_dh_C 152 ka..wl....se..g..e.spldvlaalLekklalepgerDlvvlqhefgie.sdgkkkekktstlvgy.deegssamaktvGvpaaiaaklildgk 235
                   ++  w+    +e  +  + + ld+l+a Le+ +++e+gerDlv+lqh+f++e +dg++  + tstl +y +++g+sama  vGvp++ia++l+ldg 
    CDO68211.1 624 SGlkWIglfsNEraTvrDgNLLDTLCAQLETLMKYEEGERDLVMLQHKFVVEwADGST-STITSTLEAYgEPQGHSAMALYVGVPCGIAVQLVLDGV 719
                   66777777741244343357*************************************8.9999*****98788***********************9 PP

                   CTSSEEEEGGGS.CHHHHHHHHH CS
  Sacchrp_dh_C 236 ikkrGvvtpeelvdpeiyeplle 258
                    +++G+++p   +++ei++pl e
    CDO68211.1 720 YNTPGILAP---YSKEICDPLRE 739
                   99*******...9999***9876 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0   8.7e-74   1.2e-70       1     181 [.      69     247 ..      69     254 .. 0.98

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 8.7e-74
                     THHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EEE CS
  Spermine_synth   1 efaykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayekkfdv 95 
                     ef+y+emiah+pl +h+npk+vL+iGGgDGgv+rev+kh+tve+++l+diD+ vi +sk++lp++++  +nd+rv++++gdgfkfl++   ++dv
      CDO68211.1  69 EFSYQEMIAHLPLASHPNPKKVLVIGGGDGGVVREVLKHDTVEQVVLCDIDEAVIRVSKQYLPHMSAL-LNDPRVTVFVGDGFKFLADNTSTYDV 162
                     799*****************************************************************.************************** PP

                     EEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEEEETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESS CS
  Spermine_synth  96 vivdsldpvgpaenlFskeffdllkkvlkedGviilqaekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskk 181
                     +i+ds+dpvgpa++lF+k++f+ll ++l+++G i++q+e+ +l++ l+++++++ + +f+ +++++++++Pty+sg+i+f+v+sk+
      CDO68211.1 163 IITDSSDPVGPAASLFQKPYFELLRDALTPGGHISTQGECLWLHLSLIQDLLQTTRALFP-VAKYAYTTIPTYPSGQIGFMVCSKD 247
                     ************************************************************.***********************98 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.1   6.4e-27   8.9e-24       1      53 []      12      66 ..      12      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 6.4e-27
                     EEEEEEEE..TTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N  1 gWfteisd..pglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53
                     gWf+eis+  pg+a++lkV+ +L+ ekS yQdi++fes+t+G+vLvLDgv+q+tE
       CDO68211.1 12 GWFREISSqwPGQAMTLKVNRILHVEKSLYQDILVFESETYGNVLVLDGVIQCTE 66
                     7*****************************************************9 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.31   4.3e+02       1      35 [.      90     121 ..      90     136 .. 0.80
   2 !   79.8   0.3   1.5e-25     2e-22       1     130 []     307     427 ..     307     427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.31
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrske 35 
                      vl+iG+G    +v++++++h+ v+ +++++d +++
       CDO68211.1  90 VLVIGGGD--GGVVREVLKHDTVE-QVVLCDIDEA 121
                      78899887..56999999999995.9999988776 PP

  == domain 2  score: 79.8 bits;  conditional E-value: 1.5e-25
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCie 91 
                      vl++G+G+v+++ ae+++r+ d    +t+a+r++++++ala+++   + v+++a + d+e+++a L+++++e+dlv++l+p+i++++v+ka+i+
       CDO68211.1 307 VLLLGSGAVARPCAEYVVRNPDN--ALTIACRTLKSAQALASELrntTAVSLDAGSEDPEKRAA-LEKAIAEHDLVISLVPYIYHANVIKAAIK 397
                      79********************9..9***************99966666777777888888889.***************************** PP

                      HT-EEEESS-BCGCCSCHCCSHHHHHTHHHHHHCTSEEE CS
  Sacchrp_dh_NADP  92 tgvhyvdtsiskeertnyalreavlklkekakeagvtav 130
                       ++++v+ts+         +++a+++l+++ k+ag++++
       CDO68211.1 398 GKTNVVTTSY---------ISPAIRELEDDIKKAGIVVM 427
                      **********.........*****************987 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.66   9.1e+02      12      39 ..      87     113 ..      80     119 .. 0.70
   2 !   24.4   0.1   1.7e-08   2.4e-05       8      67 ..     300     357 ..     295     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.66
                   T-EEEEES-SHHHHHHHHHHHCCT-CEE CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkv 39 
                    kkvl+iG G  +  v + L + +v++v
    CDO68211.1  87 PKKVLVIGGGDGG-VVREVLKHDTVEQV 113
                   689*****99744.45555555566655 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.7e-08
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGC CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkle 67 
                   ++  +kkvll+G G +a+  a++ +++  +++++a Rtl+ a++la+el+++  +a++l+
    CDO68211.1 300 DKAPSKKVLLLGSGAVARPCAEYVVRNPDNALTIACRTLKSAQALASELRNT--TAVSLD 357
                   566789*******************************************766..555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-07   0.00016       1      97 []      90     194 ..      90     194 .. 0.75
   2 ?   -1.8   0.0       3.8   5.3e+03       4      29 ..     333     358 ..     311     403 .. 0.56
   3 ?   -2.7   0.0       7.2     1e+04      49      75 ..     646     673 ..     636     688 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.2e-07
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH.....TTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHH...HHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee.....eglnvefvqgdaed.lpfedgsfDlvvssgalhhlsded...leka 85 
                      vL +G G G ++++++k+   ++v+ +Di+e+ ++  ++ + +     ++++v++ +gd  + l  + +++D+++   +   + ++    ++ +
       CDO68211.1  90 VLVIGGGDGGVVREVLKHDTVEQVVLCDIDEAVIRVSKQYLPHmsallNDPRVTVFVGDGFKfLADNTSTYDVIITDSS-DPVGPAAslfQKPY 182
                      899**************9658*****************9998865555666*********774778999*****98322.22222211113556 PP

                      HHHHHHHEEEEE CS
  Methyltransf_25  86 lkeiarvLkpgG 97 
                      ++ ++++L+pgG
       CDO68211.1 183 FELLRDALTPGG 194
                      677777777776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.8
                      ET-TTSHHHHHHHCTSTSSEEEEEES CS
  Methyltransf_25   4 lGcGtGrltlalakrlgkakvtgvDi 29 
                      ++c t + ++ala +l + + + +D 
       CDO68211.1 333 IACRTLKSAQALASELRNTTAVSLDA 358
                      44444444444444443333333333 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.2
                      EEEESBCCG.BSSSTTTEEEEEEESTGG CS
  Methyltransf_25  49 efvqgdaed.lpfedgsfDlvvssgalh 75 
                      + +++++e+ +++e+g+ Dlv++++ + 
       CDO68211.1 646 DTLCAQLETlMKYEEGERDLVMLQHKFV 673
                      5667788773468999999999965554 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     3e-06    0.0041       1      72 [.      91     165 ..      91     196 .. 0.76
   2 ?   -2.1   0.0       4.8   6.7e+03      10      66 ..     340     375 ..     319     403 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrenn.nnnnvelealdlldldgg..ssfDlvva 72 
                      L iG+G+G ++r++l++    +++ +Di++++i   k+ l + +++ n  +v++++ d ++      s++D+++ 
       CDO68211.1  91 LVIGGGDGGVVREVLKHDTVEQVVLCDIDEAVIRVSKQYLPHMSALlNDPRVTVFVGDGFKFLADntSTYDVIIT 165
                      569**************8888899*********888888888776514457777777765444448999999984 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.8
  Methyltransf_12  10 llralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.........ss 66 
                       ++al+ +l++++ + +D  +                              +d++         + 
       CDO68211.1 340 SAQALASELRNTTAVSLDAGS------------------------------EDPEkraalekaiAE 375
                      333444443333333333322..............................222233344444433 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00065       0.9       1      67 [.      91     165 ..      91     196 .. 0.82
   2 ?   -2.1   0.0       4.6   6.3e+03      81      89 ..     331     339 ..     310     378 .. 0.55
   3 ?    3.1   0.0      0.11   1.5e+02      39      72 ..     639     675 ..     629     690 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00065
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.....EEEETTEECCCTSS-TT..-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.....kvefvvadaeklpfedn..sfDlvvs 67 
                      L +G G G +++++ k+   ++vv +D+++++++++k+  +         +v++ v+d  k+ ++dn  ++D+++ 
       CDO68211.1  91 LVIGGGDGGVVREVLKHDtvEQVVLCDIDEAVIRVSKQYLPHMSAllndpRVTVFVGDGFKF-LADNtsTYDVIIT 165
                      56899*99888888844446****************99999988889999999999999994.4443338888875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.6
                      HHHHHHHEE CS
  Methyltransf_11  81 lkeiaRvLk 89 
                      l  + R Lk
       CDO68211.1 331 LTIACRTLK 339
                      222222222 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.11
                      CHHT-EEEETTEECCCT.SS-TT-EEEEEEES..-CC CS
  Methyltransf_11  39 seeglkvefvvadaekl.pfednsfDlvvsse..vlh 72 
                      +++g+ ++ ++a +e+l ++e++  Dlv++++  v++
       CDO68211.1 639 VRDGNLLDTLCAQLETLmKYEEGERDLVMLQHkfVVE 675
                      445556899*******879***********9944444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00011      0.15       2      81 ..     307     395 ..     306     410 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.............-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.............vkvtavdneeaaeeadvvvlavkpedveevlsel 81 
                    + ++G+G +++  a+ ++++   ++ +++a  r+ ++a++la+el              ++  a + e+a++e d v+  v++ ++++v++++
     CDO68211.1 307 VLLLGSGAVARPCAEYVVRNP--DNALTIA-CRTLKSAQALASELRnttavsldagsedPEKRA-ALEKAIAEHDLVISLVPYIYHANVIKAA 395
                    5679***********999996..6677766.9**********************9998855555.78999********************998 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00013      0.18       2      69 ..     311     395 ..     311     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-.....CCHHHHHHTT-SEEEES-...........- CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtd.....vedlaealkgadaVvsal...........g 69 
                     ++G v+r  ++  +++ + ++t+  R+ +++++l++e  ++++v++d+ +      ++l++a++ +d V+s +           +
      CDO68211.1 311 GSGAVARPCAEYVVRNPDNALTIACRTLKSAQALASElRNTTAVSLDAGSedpekRAALEKAIAEHDLVISLVpyiyhanvikaA 395
                     689**************99************999966689999999985422222579************988665554444431 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.31      16      88 ..      88     164 ..      81     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
  Methyltransf_18  16 srvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagl...edkievrlsdGleklkeee.vdtvvi 88 
                      ++v+ iG   g +  +++k++++++v+ +Di e  ++ +k+ + + +    + +++v ++dG++ l ++  +  v+i
       CDO68211.1  88 KKVLVIGGGDGGVVREVLKHDTVEQVVLCDIDEAVIRVSKQYLPHMSAllnDPRVTVFVGDGFKFLADNTsTYDVII 164
                      566778888888889999***********************9988554344669************97654444444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00028      0.38      24     103 ..      76     165 ..      55     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
                 HHHCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.....EEEEE-STTTTST..TS-EEEEEE CS
         MTS  24 letlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.....vevvasdvleeve..ekkfdlivs 103
                 + +lp +     +kvl +G G G +  +++k+    +v+l+d+d + ++++k+ l +  +      v+v+  d+++ ++     +d+i++
  CDO68211.1  76 IAHLPLAshpNPKKVLVIGGGDGGVVREVLKHDTVEQVVLCDIDEAVIRVSKQYLPHMSALlndprVTVFVGDGFKFLAdnTSTYDVIIT 165
                 55666555555678*****************999999**************997755433233455999999998877622357899987 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00023      0.32      32     124 ..      25     118 ..      16     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00023
        DREV  32 skklsanlfiqlyhalassilslfmsktdinGllgrGsmfvlseeqfrkllaiekespasdqedkklldlGaGdGeitkrv..aptfeevyatel 124
                 +  l  n  +++ ++l + il +f s+t  n l+  G +     + f    +i +   as  ++kk+l +G GdG + + v   +t+e+v   ++
  CDO68211.1  25 AMTLKVNRILHVEKSLYQDIL-VFESETYGNVLVLDGVIQCTERDEFSYQEMIAHLPLASHPNPKKVLVIGGGDGGVVREVlkHDTVEQVVLCDI 118
                 555666777888889999998.68999*********************99999999********************9998822346777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5463.03
//
Query:       CDO68212.1  [L=112]
Description: hypothetical protein BN946_scf184913.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-23   82.3  10.6    3.5e-23   82.0  10.6    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0  10.6   1.9e-27   3.5e-23       1      80 []      32     110 ..      32     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.9e-27
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+t+++qCC+sv  a++ ++++++l+ lg++++d++  vgl+Cspi+vvgvg+g++C++++vCCe+ns+++li++gC+pi
   CDO68212.1  32 CDTAPIQCCESVVPASS-DSATNILKGLGVVIQDVNALVGLECSPISVVGVGSGNACSANTVCCEDNSHSSLISIGCVPI 110
                  9***********98855.6899*********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 828.27
//
Query:       CDO68213.1  [L=1043]
Description: hypothetical protein BN946_scf184913.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.7   0.1       0.37   11.5   0.1    1.5  1  Torus     Torus domain


Domain annotation for each model (and alignments):
>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.1e-05      0.37      62      92 ..     398     427 ..     366     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.1e-05
                 -HHHHSTT--B-HHHHHT--SSGGG-SSB-S CS
       Torus  62 tkadkekesyfClfFarGlCakGkkCeylHr 92 
                 t+   +++s  C+ F  G C + + C+y Hr
  CDO68213.1 398 TRRA-TTSSEPCIRFNDGRCNSARMCRYHHR 427
                 4443.346778*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1043 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 6796.49
//
Query:       CDO68214.1  [L=313]
Description: hypothetical protein BN946_scf184913.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2245.16
//
Query:       CDO68215.1  [L=120]
Description: hypothetical protein BN946_scf184913.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-23   80.7   8.0    1.2e-22   80.4   8.0    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   8.0   6.5e-27   1.2e-22       1      79 [.      40     117 ..      40     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 6.5e-27
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtp 79 
                  C+tg +qCC+sv++a +s+av+ +l +lg++l+dl+ +vgl+Cs i+ vgvgg++sC++++vCCennsf+gli+lgC p
   CDO68215.1  40 CSTGALQCCQSVESA-NSAAVAPILAALGVVLQDLSIPVGLSCSGITGVGVGGSDSCSANAVCCENNSFGGLISLGCLP 117
                  9************99.5579*********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 925.79
//
Query:       CDO68216.1  [L=492]
Description: hypothetical protein BN946_scf184913.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3604.30
//
Query:       CDO68217.1  [L=282]
Description: hypothetical protein BN946_scf184913.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1924.12
//
Query:       CDO68218.1  [L=911]
Description: hypothetical protein BN946_scf184913.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-05   24.2   0.1    5.1e-05   22.6   0.0    1.7  2  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.8e-09   5.1e-05      46     148 ..     267     369 ..     248     385 .. 0.90
   2 ?   -2.7   0.0      0.16   2.9e+03      40      63 ..     536     559 ..     518     572 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.8e-09
  Transposase_21  46 sssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlravllwtindfPalstlsGl 140
                     s++  +W  + + + l P    k++++l   +i Gp++P k++d ++ P +  +  l  eG++ ++a++++ +     ll +  d P++++lsGl
      CDO68218.1 267 SKASDCWFYIWVIFELSPDRRYKKRYVLPGGVIGGPNKP-KNVDSFMYPGLYHVAALQLEGLSLWNAVENRLYISYIYLLLAGADGPGMAYLSGL 360
                     455678*********************************.79****************************************************9 PP

  Transposase_21 141 stk.gklac 148
                     + + g ++c
      CDO68218.1 361 VGHlGRYGC 369
                     876355555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.16
  Transposase_21  40 nPfgsmsssysvWpvllipynlPP 63 
                     nP  +++s y  W  l   y l P
      CDO68218.1 536 NPAEKLTSGYKAWEFLTYVYGLLP 559
                     999999********9999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6590.66
//
Query:       CDO68219.1  [L=92]
Description: hypothetical protein BN946_scf184913.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 732.49
//
Query:       CDO68220.1  [L=116]
Description: hypothetical protein BN946_scf184913.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 835.36
//
Query:       CDO68221.1  [L=521]
Description: hypothetical protein BN946_scf184913.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-94  316.0   0.0    4.1e-94  315.6   0.0    1.0  1  G-alpha   G-protein alpha subunit
    7.6e-13   48.3   0.0    2.9e-09   36.6   0.0    2.4  2  Arf       ADP-ribosylation factor family
  ------ inclusion threshold ------
       0.03   13.8   0.1        0.7    9.4   0.0    2.4  2  GTP_EFTU  Elongation factor Tu GTP binding domain
      0.034   14.4   0.0        4.8    7.4   0.0    2.3  2  Roc       Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.6   0.0   9.2e-98   4.1e-94       1     322 [.      42     455 ..      42     470 .. 0.87

  Alignments for each domain:
  == domain 1  score: 315.6 bits;  conditional E-value: 9.2e-98
                 XXXXXXXXXXXXXXXXXXXE...EEEEEEEESTTSSHHHHHHH...HHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT............. CS
     G-alpha   1 krtssaidkslkaerkarkk.krevkllllGqseSGKsTilkq...lkllykkgfseeelatwraviqlnivrsiktilealesleselsesf...... 89 
                 +r+s++id+++   rka ++ kr +k+lllGq+eSGKsT+lk    ++l + +++  +e+a+w+ +iqln++r++k +le l+++ +++ +        
  CDO68221.1  42 QRVSKEIDDEIALSRKAYERrKRAIKILLLGQAESGKSTTLKTctdFQLQFSPQHFAKERAAWKTIIQLNLIRCVKRLLEVLQEEYESSLQTTtpssva 140
                 589*************99999*******************9963336699999988888999**********************644443333688899 PP

                 ........................HHHC-SS-SCCCS-HCHHHH....................................................... CS
     G-alpha  90 ........................elqelkerldplkkveasliaklssateee............................................. 119
                                         +++ ++ rl+ l+ ve++l++kl + +  +                                             
  CDO68221.1 141 kgkgvagrtpttpgvrfstsplndHHRRIRMRLSALLPVEEELMRKLLPESAGRndvcvragsgwkgvlaalsantstldaplpqppplvsamkggssr 239
                 99***********************************************99999677777777777777666666666666666666655555555554 PP

                 ...HHCCHHC-HCHHH..................HHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEE CS
     G-alpha 120 ...qeiefnpraevge..................dikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfe 197
                                +                  di+aLw+d+++q++++++ +++l+d  ++Fl+d  r++s  Y+ptddDi++ar++t+G++e++f 
  CDO68221.1 240 pgtA-----------NghardrdnptavlaacrdDIVALWEDKVVQAVLKKQ-NVRLQDMPGFFLNDAARVASIGYEPTDDDIVRARVRTLGVEEHHFT 326
                 4440...........0444445555555555555******************.********************************************** PP

                 C....T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS.-G CS
     G-alpha 198 v....dsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkg.kl 291
                 +      ++e+ i+dvgG+rs r+ W+p+fddv+aiiFl++l +f+ +l ed+kvnrle+s+ l++e+c+n+ll++t +iLflnK+Dil+  l  g ++
  CDO68221.1 327 MesgaLPGTEWYIYDVGGSRSVRQHWIPYFDDVQAIIFLAPL-AFNLTLDEDPKVNRLEDSIILWREVCQNALLAKTTLILFLNKMDILQATLAAGiRV 424
                 *888844799*******************************8.6******************************************************* PP

                 GGCCTT--H.CCHHHHHHHHHHHHHHCCCCC CS
     G-alpha 292 skyfpsyegrkndlesvlkylrnkFeeihke 322
                 +ky+psy++++nd+++v+ky+r+kF+ +h +
  CDO68221.1 425 AKYVPSYGDQPNDVQHVTKYFRDKFRGYHLR 455
                 ***************************9975 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00017      0.78       9      36 ..      60      87 ..      53     109 .. 0.79
   2 !   36.6   0.0   6.4e-13   2.9e-09      47     139 ..     324     425 ..     308     449 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
                TT.TTEEEEEEEESTTSSHHHHHHHHHH CS
         Arf  9 klkkkelrilllGLDnaGKtTilkklkl 36
                + +k+ ++illlG  ++GK+T lk  ++
  CDO68221.1 60 ERRKRAIKILLLGQAESGKSTTLKTCTD 87
                556899****************997654 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 6.4e-13
                 SEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT.........-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHH CS
         Arf  47 gfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsa.........dreRleeakeeLkalleeeelkevallvlaNKqDlpealseeel 136
                 +f++e+ +  + +  ++DvGG +++R+ W  Yf++++a+if+   a         + +Rle++    +++ ++  l++ +l+++ NK+D+ +a  ++ +
  CDO68221.1 324 HFTMESGALPGTEWYIYDVGGSRSVRQHWIPYFDDVQAIIFLAPLAfnltldedpKVNRLEDSIILWREVCQNALLAKTTLILFLNKMDILQATLAAGI 422
                 788888888999999**************************965432222211124569999999999************************9988877 PP

                 HHH CS
         Arf 137 rel 139
                 r +
  CDO68221.1 423 RVA 425
                 765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.034   1.5e+02       2      23 ..      64      85 ..      63     129 .. 0.83
   2 ?    9.4   0.0   0.00016       0.7     112     141 ..     391     420 ..     388     446 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.034
                CEEEEEEEESTTSSHHHHHHHH CS
    GTP_EFTU  2 rirnigiighvDhGKtTLtdrL 23
                r ++i ++g  ++GK+T++ + 
  CDO68221.1 64 RAIKILLLGQAESGKSTTLKTC 85
                6688999**********98765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00016
                 HHHHHHHHHTTTEEEEEEESCGSTHHHHHH CS
    GTP_EFTU 112 eevlrlalkegvpiivfiNKmDrlkaelke 141
                 +ev + al  ++ +i+f+NKmD l+a+l  
  CDO68221.1 391 REVCQNALLAKTTLILFLNKMDILQATLAA 420
                 68899999999*************998865 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0011       4.8       1      23 [.      67      89 ..      67     118 .. 0.78
   2 ?    4.7   0.0    0.0077        35      56     119 ..     335     412 ..     302     413 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
                EEEEESSTTSSHHHHHHCHCT-C CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedk 23
                K++l+G++++GK++ lk  ++ +
  CDO68221.1 67 KILLLGQAESGKSTTLKTCTDFQ 89
                9*************999887644 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0077
                 EEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE.............GHHHHCHHHHHHHHHHH.CSSS-EEEEEE-TT CS
         Roc  56 vklniWDtaGqerfrslhplylreaalailvyd.............srssenlkeWlkelkkv.agkspvilvgnkiD 119
                  +  i+D++G   +r+    y+ + +++i++               +r ++++  W + +++    k+ +il  nk+D
  CDO68221.1 335 TEWYIYDVGGSRSVRQHWIPYFDDVQAIIFLAPlafnltldedpkvNRLEDSIILWREVCQNAlLAKTTLILFLNKMD 412
                 56689***********99899999888886532222243333332222234455688888776245677888889988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3848.55
//
Query:       CDO68222.1  [L=255]
Description: hypothetical protein BN946_scf184913.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.36s 00:00:00.92 Elapsed: 00:00:00.61
# Mc/sec: 1255.83
//
Query:       CDO68223.1  [L=654]
Description: Pyranose oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-09   37.0   0.1    1.4e-08   35.4   0.1    1.9  1  GMC_oxred_C    GMC oxidoreductase
     0.0099   15.3   0.0      0.021   14.2   0.0    1.5  1  GMC_oxred_N    GMC oxidoreductase
  ------ inclusion threshold ------
      0.022   14.0   0.1        5.4    6.2   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
       0.12   11.6   0.2       0.27   10.4   0.0    1.6  2  FAD_binding_3  FAD binding domain
       0.22   12.0   7.0       0.58   10.7   7.0    1.7  1  UreE_C         UreE urease accessory protein, C-terminal doma
          1    8.7   3.7        1.8    7.9   3.7    1.4  1  SelP_N         Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   4.6e-12   1.4e-08      87     143 ..     553     611 ..     547     612 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.6e-12
                  -S--B-TT-B-STCGC..BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHH CS
  GMC_oxred_C  87 saHplGtcrMGadpkd..sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAek 143
                  + H  Gt rMG d++    +VD+  rv+g+ nL+  +   + +a   nptlt++alA k
   CDO68223.1 553 VLHLGGTHRMGFDEQAdkCCVDTSSRVWGTNNLFLGGVGNIGTAFASNPTLTAMALAIK 611
                  57*********9998889***************************************87 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     7e-06     0.021     224     270 ..     298     343 ..     275     347 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7e-06
  GMC_oxred_N 224 rkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGk 270
                   ++ +  ++++d  ++ k+++++ak  v+ aGa+ + q++ +SG+G+
   CDO68223.1 298 DQGTISTIQVKDLITG-KEYRIKAKAFVITAGAVHNTQIMVNSGFGR 343
                  4556667777777777.9***************************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0027       7.9       1      29 [.      54      82 ..      48     128 .. 0.84
   2 ?    6.2   0.0    0.0018       5.4      70     114 ..     289     334 ..     223     387 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0027
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlv 29
                 +d+v+ G+Gp G + a+ l ++g++v+ +
   CDO68223.1 54 YDIVIAGSGPVGATYARILVEKGYNVAFF 82
                 68999999999999999999999999877 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0018
                  CHCCTCEEEEESCEEEEETEEEC...TCEEEEEESEEEE---EEE-BC CS
                  xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  70 llgeevvkidpgkkkvklekkke...gdeekiaydklvlAtGssprdl 114
                  +    v + d++++++   + k+   g+e +i++++ v+  G+  ++ 
   CDO68223.1 289 VQ--RVHESDTDQGTISTIQVKDlitGKEYRIKAKAFVITAGAVHNTQ 334
                  22..35555666666655555555669999999999999999866654 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     9e-05      0.27       1      27 [.      53      79 ..      53      92 .. 0.91
   2 ?   -2.9   0.0         1   3.1e+03     128     160 ..     292     326 ..     279     331 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9e-05
                   EEEEEEE--SHHHHHHHHHHHHTTHHE CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrv 27
                   e+d++I G+Gp+G++ a++L e+G +v
     CDO68223.1 53 EYDIVIAGSGPVGATYARILVEKGYNV 79
                   5799*******************9775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
                    EECCEECCCCC.CCEEEECCTTEEEEEEEE.EEEE CS
  FAD_binding_3 128 vesleqdeegv.taevrdketgeeetvrak.YlvG 160
                    v+    d+ ++ t +v+d  tg+e++++ak +++ 
     CDO68223.1 292 VHESDTDQGTIsTIQVKDLITGKEYRIKAKaFVIT 326
                    44334444444155788999999999999856665 PP

>> UreE_C  UreE urease accessory protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   7.0   0.00019      0.58      54      87 .]     613     649 ..     600     649 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
      UreE_C  54 veevlapfepe....ggAyeaakghghhehehghehsH 87 
                 +e + a+f+p       A+++a++hgh +h+hgh+h H
  CDO68223.1 613 CEYIVANFDPSpinaTHAQAHAHDHGH-GHSHGHGHGH 649
                 556778999997543334433444444.6677777776 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.7    0.0006       1.8     175     206 ..     624     651 ..     599     654 .] 0.59

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0006
      SelP_N 175 paeaeektehehahshkqghkhhekhghhHke 206
                 p +     +h++ah h +gh h + hgh H++
  CDO68223.1 624 PIN----ATHAQAHAHDHGHGHSHGHGHGHRG 651
                 333....3455666666677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.38s 00:00:01.14 Elapsed: 00:00:00.56
# Mc/sec: 3518.64
//
Query:       CDO68224.1  [L=809]
Description: hypothetical protein BN946_scf184913.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-60  203.8   0.5    2.5e-60  203.1   0.5    1.4  1  AUDH_Cupin  Aldos-2-ulose dehydratase/isomerase (AUDH) Cupin 
    4.3e-27   94.4   0.1    9.2e-27   93.3   0.1    1.6  2  PBP3        Penicillin Binding Protein 3 Domain
    5.9e-05   23.6   8.7    0.00036   21.0   0.1    4.5  4  VCBS        Repeat domain in Vibrio, Colwellia, Bradyrhizobiu
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.078   13.1   0.0    2.4  1  FG-GAP      FG-GAP repeat


Domain annotation for each model (and alignments):
>> AUDH_Cupin  Aldos-2-ulose dehydratase/isomerase (AUDH) Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   0.5   5.6e-64   2.5e-60       1     158 []     630     803 ..     630     803 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 5.6e-64
  AUDH_Cupin   1 vkvedlswgkn..fkdlefynltGfhvrfadd.keeiaHiqlWtaGlgvdarlHnHsdksFkeiHiclsnGtkkggmralkeesaeeidekaelekkle 96 
                 vk+e+l+w++n  ++++efyn+tGfhv+f dd  ++++HiqlWt+G+g++ar+H H+++ F eiH+c++nG++++gmr++++++ +++d+kael+k+++
  CDO68224.1 630 VKCEKLAWASNgnWDGFEFYNMTGFHVHFGDDtLDKLCHIQLWTLGMGETARFHIHDTQPFGEIHCCIANGGGTAGMRWFADDV-TSVDQKAELTKAYV 727
                 5899*****9999*******************99************************************************98.88************ PP

  AUDH_Cupin  97 ekkleklvlpeleehGplWk..edskgkpvlrknntvdYPwHaWlaG............lpeseqkvDvWlAlefd 158
                 e+++e++v+p l+ehGplWk   +++++p l  n++ dYP+HaWla             lp seqk+DvWlA+ef+
  CDO68224.1 728 EDNTEQVVVPALHEHGPLWKvvPGKQAQPKLLPNGCADYPYHAWLASkfgdwklpikppLPPSEQKYDVWLAFEFP 803
                 ********************999***********************5555********99***************7 PP

>> PBP3  Penicillin Binding Protein 3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         4   1.8e+04      91     105 ..     244     258 ..     241     259 .. 0.76
   2 !   93.3   0.1   2.1e-30   9.2e-27       1     110 []     480     595 ..     480     595 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4
        PBP3  91 dtalsaddeGAilLr 105
                 dtal a+ eG++ L+
  CDO68224.1 244 DTALVAGREGVVYLH 258
                 677888888888775 PP

  == domain 2  score: 93.3 bits;  conditional E-value: 2.1e-30
        PBP3   1 IvatlwdkEvllyvprpkeikeaa....elpLidvanrkisvevlpkgekievaagdGiKVlyGsitlkdeekk..vrrplatkaftaastlvssadta 93 
                 I ++++ +Evl+ vprp+     a    +++Lidva+ +++v vlp+++++++ ++dG+KV+yG++++k  +    v+r+la+ a++aas ++ s d++
  CDO68224.1 480 IRVHRLVDEVLVLVPRPSDAAATAaggtSISLIDVAGHRLHVHVLPPNASAKFHHKDGVKVIYGEVSMKARKRGhtVTRGLAPPAHKAASVQILSHDGT 578
                 7789999**********66554444555****************************************9875545699********************* PP

        PBP3  94 lsaddeGAilLrlkpls 110
                 ++a++ GA+l+rl++ls
  CDO68224.1 579 ITAGASGAVLMRLEHLS 595
                 **************986 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   8.1e-08   0.00036       5      61 .]      49     113 ..      46     113 .. 0.84
   2 ?    2.0   0.1     0.074   3.3e+02      14      48 ..     131     166 ..     122     170 .. 0.67
   3 ?   -0.5   0.6      0.43   1.9e+03       4      48 ..     240     289 ..     239     295 .. 0.58
   4 ?    1.7   0.0      0.09   4.1e+02      35      55 ..     344     364 ..     307     366 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8.1e-08
        VCBS   5 DGrlDlvva......ndgglrvyrnngdG..tftdvtktslggsgggtgvavgDlDgDGdlDllv 61 
                 D ++Dl+         + ++++++n ++   ++t++ ++++ + + ++++ ++Dl gDG+ D+++
  CDO68224.1  49 DRYPDLIGYglgaqgKPATITLFVNPKNSpnHGTEWVPVPIQTMDFPVSMSFADLTGDGYNDIII 113
                 7889999765666633688******9854227999999*************************85 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.074
        VCBS  14 ndgglrvyrnngdGtftdvtkt..slggsgggtgvav 48 
                 + g+++++rn g+ +f +++     +g s g++ + v
  CDO68224.1 131 DGGRVQWLRNPGN-RFAKISWAakHIGNSTGMHRLKV 166
                 3589******998.78877532225555555555555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.43
        VCBS   4 gDGrlDlvvandgglrvyrnngdGtftdv.tktslgg....sgggt.gvav 48 
                 ++G++  +va+++g++ ++++++ +++ +   t l++    +++g  +v++
  CDO68224.1 240 NNGLDTALVAGREGVVYLHHDAK-KWKYSvVGTGLPQqgdnPYWGSgSVDF 289
                 67888889999888888888865.555331234444444333333324555 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.09
        VCBS  35 tslggsgggtgvavgDlDgDG 55 
                     ++g++++v  +D+Dg G
  CDO68224.1 344 LNAEHTGTIHHVETADVDGTG 364
                 34445888999*******977 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.078       2      20 ..      95     113 ..      94     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                 TSSEEEESTSSSSS-EEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLav 20 
                   s + +D+ GDGy D+++
  CDO68224.1  95 PVSMSFADLTGDGYNDIII 113
                 568899***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.54
# Mc/sec: 4495.68
//
Query:       CDO68225.1  [L=715]
Description: Pyranose oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-06   29.1   0.2    8.9e-06   26.3   0.0    2.4  2  GMC_oxred_C    GMC oxidoreductase
    1.6e-06   27.7   0.0    2.8e-06   26.9   0.0    1.3  1  GMC_oxred_N    GMC oxidoreductase
  ------ inclusion threshold ------
      0.025   13.8   0.0      0.046   13.0   0.0    1.4  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.5e-09   8.9e-06      87     125 ..     613     653 ..     546     664 .. 0.83
   2 ?   -0.2   0.1      0.22   1.3e+03     129     143 ..     672     686 ..     669     687 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.5e-09
                  -S--B-TT-B-STCGC..BSB-TTSBBTT-CSEEE-SGGGS CS
  GMC_oxred_C  87 saHplGtcrMGadpkd..sVVDsdlrvhgvdnLrVvDaSvf 125
                  + H  Gt rMG d+k+  ++VD+d rv+gv+nL+  +   +
   CDO68225.1 613 VLHLGGTHRMGFDEKKdkACVDTDSRVFGVQNLFLGGCGNI 653
                  68***********99999***************98776655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
                  -SS-THHHHHHHHHH CS
  GMC_oxred_C 129 pganptltilalAek 143
                  +++ ptlt++alA k
   CDO68225.1 672 VCVTPTLTAMALAIK 686
                  5899*********86 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.6e-10   2.8e-06     211     268 ..     284     341 ..     257     361 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.6e-10
  GMC_oxred_N 211 ltgakaekiil.egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGl 268
                     + +e++i  e+ + r+ +++++d  g+ +r++++ak+ ++a Ga+ +Pq+L +SG+
   CDO68225.1 284 FPAVICERVIRdENDGARIASIQINDLVGQ-QRYRIKAKVFILATGAVHNPQILVNSGF 341
                  5567899**88777899*************.***************************9 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.6e-06     0.046       1      27 [.      54      80 ..      54      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.6e-06
                   EEEEEEE--SHHHHHHHHHHHHTTHHE CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrv 27
                   e+dV+I G+Gp G++ a++L eaG ++
     CDO68225.1 54 EYDVVIAGSGPIGATYARILVEAGYKN 80
                   589*********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4527.80
//
Query:       CDO68226.1  [L=608]
Description: hypothetical protein BN946_scf184913.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-08   34.0   0.0    4.2e-08   33.2   0.0    1.3  1  DUF659         Protein of unknown function (DUF 659)
      3e-05   23.7   0.0      6e-05   22.8   0.0    1.5  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.6e-12   4.2e-08      64     139 ..      12      90 ..       3     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 4.6e-12
      DUF659  64 ksvdassekktaeylaelldkvieevgaen...Vvqvitdnasnykkagklleekyptifwtpcaahclnlmledilkl 139
                 + vd+s+e+kta++ ++++++v++e g++    V+ + +d++ + ++a  +l  kyp +++  c+ah++nl++ + l +
  CDO68226.1  12 RVVDTSHERKTADNFVKHVEEVLQETGEKWkvkVIAFTSDASGESRAARIKLLFKYPYLIILDCYAHQINLIVGNYLGC 90 
                 569************************9975568888889999999**************************9987665 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   6.7e-09     6e-05      18      76 ..     350     411 ..     333     418 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.7e-09
                    ..--HHHHHH.HTTTTSHH..HHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHH CS
  Dimer_Tnp_hAT  18 sefdvlewwk.ensskyPn..lsklardvLsipvssaasErsFstlgkvllesrnsleplnv 76 
                    + +d+l  w+ ++ +  P+  l  la+ +Ls+ + sa++Er Fs  g+ l++ rn+l  +++
     CDO68226.1 350 RSVDPLGLWEdTRVADRPLrpLATLACHLLSVCANSASCERLFSVFGQLLTKLRNRLGTDTL 411
                    678888888884444444333899********************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4197.45
//
Query:       CDO68227.1  [L=71]
Description: hypothetical protein BN946_scf184870.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-27   96.5   2.7    1.1e-27   96.4   2.7    1.0  1  Pho88     Phosphate transport (Pho88)


Domain annotation for each model (and alignments):
>> Pho88  Phosphate transport (Pho88)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   2.7   6.4e-32   1.1e-27       1      71 [.       1      71 []       1      71 [] 0.98

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 6.4e-32
       Pho88  1 mnpqvtnlviilvlmqvskkidfedpevllyvRilYvvsqliillvylyikskikkknDlttlkyvepasp 71
                mnp+v nlvi+l +mqv+++i+f+dp+vl+yvRi+Yv+ q+++l+vy+y+ ++ikkknD+t+lkyvep+++
  CDO68227.1  1 MNPAVNNLVISLAAMQVARRIPFDDPQVLVYVRIAYVATQVLVLGVYYYVAQQIKKKNDQTVLKYVEPNPM 71
                9*******************************************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 518.50
//
Query:       CDO68228.1  [L=535]
Description: hypothetical protein BN946_scf184870.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 3664.65
//
Query:       CDO68229.1  [L=695]
Description: hypothetical protein BN946_scf184870.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-15   56.4   0.0    5.1e-15   55.6   0.0    1.4  1  DDE_1        DDE superfamily endonuclease
    1.4e-06   28.2   0.2    3.1e-06   27.1   0.2    1.6  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
       0.07   13.3   0.4       0.07   13.3   0.4    2.3  3  Bot1p        Eukaryotic mitochondrial regulator protein


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   8.5e-19   5.1e-15       3     126 ..     207     334 ..     205     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 8.5e-19
       DDE_1   3 rltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWL.kvfdkrle....aekrkilLlldssrshetvel.les 95 
                 +l++++++++a++  Lkp  i+++++ +  +     ++  ++++  + ++w+++s   +W+ + f+++ +    ++++ +lL+ d+++sh  ++l    
  CDO68229.1 207 ELVTVIECVSADGAALKPGFIFQGSTCELDWW--DGPECEGLKIGLTANGWTDDSQCLKWFkETFIPQARaraeHDDEPVLLIFDGHGSHVSENLvALA 303
                 567899***********************999..89999******************************99999999**************99998888 PP

       DDE_1  96 elqniklvflPassasllqPldqgvvselKa 126
                 e+ ni l+ l ++++++lqPld+gv+ +++ 
  CDO68229.1 304 EEFNILLFKLIPHATHMLQPLDVGVFGPVQL 334
                 999999999888*************988765 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   5.3e-10   3.1e-06       2      61 ..      74     125 ..      73     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 5.3e-10
                  HHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT.S CS
  HTH_Tnp_Tc5   2 pelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh.g 61 
                  + +Ek L++W +   ++g+ i++e++r kA++l+          +k+S +W++ F kRh +
   CDO68229.1  74 ALQEKILVDWTKLWGAEGFAISRETLRIKAKHLC---------GHKPSLRWVYDFQKRHsD 125
                  679***********99*****************4.........78**************54 PP

>> Bot1p  Eukaryotic mitochondrial regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   1.2e-05      0.07       9      78 ..      10      79 ..       3      81 .. 0.94
   2 ?   -1.3   0.2      0.36   2.2e+03     110     156 ..     514     559 ..     507     575 .. 0.76
   3 ?   -2.5   0.1      0.86   5.1e+03     126     148 ..     577     599 ..     561     609 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
       Bot1p  9 psfrsepvlseelreeIyeevakkgksvrevSvkygvkikRveAivrLkelekkwknkgkpllkkysral 78
                ++++s+  ++e ++ ++ ++ ++++ ++ ++S++++v  +R+   +rL++  +  +n+g++ll++ ++ +
  CDO68229.1 10 QQCESDMTIEERMKSAVKHAQSHQNPNLAKISRDFRVPYNRLYGRLRLRKQSRPVRNEGQQLLSALQEKI 79
                78***************999999999*************************************9999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.36
       Bot1p 110 fvpvaesepFtpvdaakvlelepaaetlekaeevkeekesaeevtee 156
                 ++ ++e+e+ ++++a  +l     +etl+++ ++ ++++s ++v  +
  CDO68229.1 514 SMYTSEHEHRVTAEAHLAL-CIRENETLRHQLNASSKSTSRKQVRVT 559
                 6788999999999988888.667777888877777777777766554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.86
       Bot1p 126 kvlelepaaetlekaeevkeeke 148
                 kv+e++ a+e+++ka    +++e
  CDO68229.1 577 KVREVKEADEQARKARRDIQTQE 599
                 45555555555555544333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4763.95
//
Query:       CDO68230.1  [L=467]
Description: hypothetical protein BN946_scf184870.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-15   55.5  14.7    2.5e-06   27.2   0.3    4.1  4  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    5.4e-11   43.2  15.4    7.2e-05   23.5   0.1    4.1  4  Torus      Torus domain
      1e-06   28.4  24.8    0.00038   20.2   2.6    4.8  5  zf-CCCH_4  CCCH-type zinc finger
    3.8e-06   26.7  30.3    3.8e-05   23.6   1.6    5.6  6  zf_CCCH_4  Zinc finger domain
    1.6e-05   25.2  28.7       0.01   16.3   5.0    4.2  4  zf-CCCH_2  RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   1.3   5.6e-09     2e-05       1      25 [.       8      31 ..       8      33 .. 0.94
   2 !   27.2   0.3   7.1e-10   2.5e-06       1      26 [.     106     132 ..     106     133 .. 0.95
   3 ?    0.2   0.0      0.21   7.6e+02      21      26 ..     184     189 ..     181     190 .. 0.86
   4 !   10.7   0.6   0.00011      0.38      15      27 .]     207     219 ..     206     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.6e-09
                -HCHCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH  1 yktelCrffmrtGyCkyGdrCkFaH 25
                ++t+lCr+f+  G+C+ G+ C+++H
  CDO68230.1  8 FRTKLCRNFAL-GHCPQGEDCNYIH 31
                579********.************* PP

  == domain 2  score: 27.2 bits;  conditional E-value: 7.1e-10
                 -HCHCBCHHHHHS.--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtG.yCkyGdrCkFaHg 26 
                 ++t+lCr++ r++ +C+ Gd+C+++H+
  CDO68230.1 106 WRTALCRHYVRNRgWCPMGDQCNYIHD 132
                 78**********99************6 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.21
                 -SSBSC CS
     zf-CCCH  21 CkFaHg 26 
                 C++ H+
  CDO68230.1 184 CQYLHP 189
                 *****9 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00011
                 -TTGGG-SSBSCS CS
     zf-CCCH  15 CkyGdrCkFaHgq 27 
                 C++G+ C++ H++
  CDO68230.1 207 CRRGPLCPYKHPE 219
                 ***********96 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1     2e-08   7.2e-05      69      96 ..       9      36 ..       2      45 .. 0.86
   2 !   16.2   0.2   3.5e-06     0.013      70      97 ..     108     137 ..      97     147 .. 0.80
   3 !   10.4   1.5   0.00023      0.84      63      93 ..     161     190 ..     134     201 .. 0.76
   4 ?    1.2   0.3      0.17   6.1e+02      80      98 ..     206     224 ..     198     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2e-08
                T--B-HHHHHT--SSGGG-SSB-S---S CS
       Torus 69 esyfClfFarGlCakGkkCeylHrlPte 96
                ++ +C  Fa G C++G++C+y+H  P +
  CDO68230.1  9 RTKLCRNFALGHCPQGEDCNYIHATPAS 36
                4679********************9975 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.5e-06
                 --B-HHHH..HT--SSGGG-SSB-S---SS CS
       Torus  70 syfClfFa..rGlCakGkkCeylHrlPtee 97 
                 + +C ++   rG C++G +C+y+H+l  +e
  CDO68230.1 108 TALCRHYVrnRGWCPMGDQCNYIHDLTLAE 137
                 56788885337*************997655 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00023
                 HHHHSTT--B-HHHHHT--SSGGG-SSB-S- CS
       Torus  63 kadkekesyfClfFarGlCakGkkCeylHrl 93 
                 k++  +++  C  + +GlC+  ++C+ylH +
  CDO68230.1 161 KGKMGSKHSHCWAYVQGLCHV-QDCQYLHPV 190
                 3334455699*********86.9******76 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.17
                 --SSGGG-SSB-S---SS- CS
       Torus  80 lCakGkkCeylHrlPteed 98 
                  C +G  C y H  P  +d
  CDO68230.1 206 NCRRGPLCPYKHPEPYVSD 224
                 6***********9887766 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.0   6.6e-06     0.024       1      21 [.      11      31 ..      11      32 .. 0.96
   2 !   20.2   2.6   1.1e-07   0.00038       2      22 .]     110     132 ..     109     132 .. 0.96
   3 ?    2.6   0.2     0.035   1.2e+02       2      11 ..     170     179 ..     169     180 .. 0.93
   4 ?   -1.2   0.0      0.52   1.9e+03      17      22 .]     184     189 ..     184     189 .. 0.92
   5 !    5.2   0.3    0.0051        18      10      22 .]     206     218 ..     200     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.6e-06
   zf-CCCH_4  1 rlCpyfakGsCrfGdnCrFsH 21
                +lC++fa G C  G+ C++ H
  CDO68230.1 11 KLCRNFALGHCPQGEDCNYIH 31
                79******************* PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.1e-07
   zf-CCCH_4   2 lCpyfa..kGsCrfGdnCrFsHd 22 
                 lC++++  +G C +Gd C++ Hd
  CDO68230.1 110 LCRHYVrnRGWCPMGDQCNYIHD 132
                 8*****9999************9 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.035
   zf-CCCH_4   2 lCpyfakGsC 11 
                 +C+ +++G C
  CDO68230.1 170 HCWAYVQGLC 179
                 7********* PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.52
   zf-CCCH_4  17 CrFsHd 22 
                 C ++H+
  CDO68230.1 184 CQYLHP 189
                 9****7 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.0051
   zf-CCCH_4  10 sCrfGdnCrFsHd 22 
                 +Cr G+ C ++H+
  CDO68230.1 206 NCRRGPLCPYKHP 218
                 7***********7 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.6   1.1e-08   3.8e-05       1      19 []      13      31 ..      13      31 .. 0.99
   2 ?   -2.8   0.0       2.1   7.4e+03       3       8 ..      82      87 ..      81      87 .. 0.84
   3 !   13.0   1.2   2.3e-05     0.083       1      19 []     111     131 ..     111     131 .. 0.92
   4 ?    0.3   0.6      0.22   8.1e+02       1       9 [.     171     179 ..     171     180 .. 0.92
   5 ?    0.7   0.1      0.17   6.1e+02      14      19 .]     183     188 ..     182     188 .. 0.89
   6 !    7.2   0.8    0.0015       5.3       8      19 .]     206     217 ..     206     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.1e-08
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                C++f+ G C+ G+ C+++H
  CDO68230.1 13 CRNFALGHCPQGEDCNYIH 31
                ******************* PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
   zf_CCCH_4  3 fflqGt 8 
                ++++G+
  CDO68230.1 82 NYQWGS 87
                8***96 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.3e-05
   zf_CCCH_4   1 Ckfflq..GtCkkGdkCrFaH 19 
                 C+++++  G+C+ Gd+C+++H
  CDO68230.1 111 CRHYVRnrGWCPMGDQCNYIH 131
                 88888888************* PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.22
   zf_CCCH_4   1 CkfflqGtC 9  
                 C  ++qG C
  CDO68230.1 171 CWAYVQGLC 179
                 999****99 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.17
   zf_CCCH_4  14 kCrFaH 19 
                  C+++H
  CDO68230.1 183 DCQYLH 188
                 6***** PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0015
   zf_CCCH_4   8 tCkkGdkCrFaH 19 
                 +C++G  C++ H
  CDO68230.1 206 NCRRGPLCPYKH 217
                 7*********99 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.2     4e-05      0.14       2      17 ..      13      31 ..      12      32 .. 0.95
   2 !   11.2   1.6   0.00011      0.41       2      17 ..     111     131 ..     110     131 .. 0.97
   3 ?    0.0   0.4      0.38   1.4e+03      12      18 .]     183     189 ..     178     189 .. 0.91
   4 !   16.3   5.0   2.9e-06      0.01       1      18 []     200     218 ..     200     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
   zf-CCCH_2  2 Crffpn..C.tnpkCpFaH 17
                Cr+f+   C  +++C ++H
  CDO68230.1 13 CRNFALghCpQGEDCNYIH 31
                ******************* PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
   zf-CCCH_2   2 Crffpn....C.tnpkCpFaH 17 
                 Cr++      C ++++C ++H
  CDO68230.1 111 CRHYVRnrgwCpMGDQCNYIH 131
                 ********************* PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.38
   zf-CCCH_2  12 kCpFaHP 18 
                 +C + HP
  CDO68230.1 183 DCQYLHP 189
                 6*****9 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 2.9e-06
   zf-CCCH_2   1 pCrffpnC.tnpkCpFaHP 18 
                 pC  +pnC ++p Cp++HP
  CDO68230.1 200 PCLAWPNCrRGPLCPYKHP 218
                 7888**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3429.01
//
Query:       CDO68231.1  [L=490]
Description: hypothetical protein BN946_scf184870.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.044   13.4   0.3       0.46   10.1   0.0    2.6  2  TPD52     Tumour protein D52 family


Domain annotation for each model (and alignments):
>> TPD52  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.045   8.1e+02      26      53 ..      93     120 ..      80     124 .. 0.85
   2 ?   10.1   0.0   2.6e-05      0.46      63      93 ..     397     427 ..     394     459 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.045
       TPD52  26 eeereeLkseLakleeeivtLrqvLaak 53 
                 ++++ eL++ L++l++++++  +vL+ k
  CDO68231.1  93 DQDHMELHEWLQQLKDKVMSHLEVLMQK 120
                 67899************99999999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 2.6e-05
       TPD52  63 klGltalneLrqnlskswhdvqtsnaYkkts 93 
                  l + aln++ ++  +sw ++q+++aY+  s
  CDO68231.1 397 ELQMHALNQMERKHPRSWDELQSHTAYEDLS 427
                 68899**********************8633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3359.26
//
Query:       CDO68232.1  [L=81]
Description: hypothetical protein BN946_scf184784.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.53
# Mc/sec: 458.52
//
Query:       CDO68233.1  [L=195]
Description: hypothetical protein BN946_scf184784.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.6   1.3       0.16   12.3   1.3    1.6  1  Bd3614_N  Bd3614-like deaminase N-terminal
      0.098   12.5   0.0       0.47   10.3   0.0    2.1  2  HTH_10    HTH DNA binding domain


Domain annotation for each model (and alignments):
>> Bd3614_N  Bd3614-like deaminase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   1.8e-05      0.16      43      86 ..      12      57 ..       8      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
    Bd3614_N 43 vrlvlgareaggraranawara..rilstralsdldravvkvaaqr 86
                +rl     ++g  a a +war   r + tra+sd   a  k +a r
  CDO68233.1 12 TRLKRPGNKSGTNATASRWARLrgRGVPTRAMSDPVTAAEKASAMR 57
                56666677899*********8622689*******999988888876 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.2e-05      0.47       4      27 ..      83     106 ..      82     120 .. 0.86
   2 ?   -1.2   0.0       0.2   1.8e+03      38      47 ..     150     159 ..     138     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
      HTH_10   4 kqlevlklAyemGYFdyPRrvtlk 27 
                 +ql+    A ++GYF+  Rr t+ 
  CDO68233.1  83 RQLAPTEPARDKGYFESARRWTTG 106
                 6666667799**********9976 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.2
      HTH_10  38 stlsehLrka 47 
                 s l +hLr+ 
  CDO68233.1 150 SELAQHLRNE 159
                 5678999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1380.91
//
Query:       CDO68234.1  [L=206]
Description: hypothetical protein BN946_scf184784.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   14.3   0.0        0.3   11.4   0.0    2.0  2  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.032   5.7e+02      85     130 ..      19      53 ..       3      76 .. 0.56
   2 ?   11.4   0.0   1.7e-05       0.3      57     146 ..     105     194 ..      99     201 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHCHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCS CS
      Pro_CA  85 dkwlekirealekveeelesekekearerlleeenVaeqlenLlek 130
                 d+w+++++++           ++ +++e+++ ++ V + +++L ++
  CDO68234.1  19 DTWIDHLQSS-----------EKCAKLEDAIRRADVSHDIRRLNAT 53 
                 3344444333...........2334445555555555555555444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.7e-05
                 EEEEEETT-HHHHHHHS..HHCCSTTSSHHHHHHHHHHHHHHHCHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCS.HHHHHHHHTTS-EEEE CS
      Pro_CA  57 ivVlGHskCGavkaalk..aekseeeagaidkwlekirealekveeelesekekearerlleeenVaeqlenLlek.pvvreavekgklkvhG 146
                 i VlGH + Ga++a +   + + ++ ++ ++++++   +a+++ ++  +++k k+a+++    e   + l++ +   ++++e++ + +++v G
  CDO68234.1 105 ITVLGHLSTGAISAGMLflKLSPDTVQSVLTSLMSAFSPARAASSKLVKTMKLKKAVRE---GERTLAALQRKYGAiKFLEESLVQASVNVDG 194
                 89***********9998764444455566666666666666655544444332222222...2222222222222235555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1466.08
//
Query:       CDO68235.1  [L=204]
Description: hypothetical protein BN946_scf184784.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00035   20.7   0.1     0.0045   17.1   0.0    2.3  2  PI_PP_I   Phosphoinositide phosphatase insertion domain
    0.00083   19.4   0.2      0.036   14.1   0.4    2.3  2  DUF1664   Protein of unknown function (DUF1664)
     0.0028   16.6   2.0     0.0028   16.6   0.7    1.7  2  Spc7      Spc7 kinetochore protein
     0.0049   16.8   1.8      0.015   15.3   0.4    2.1  2  MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal regio
     0.0097   15.5   2.0      0.013   15.0   1.6    1.4  2  Leu_zip   Leucine zipper
  ------ inclusion threshold ------
      0.019   13.9   1.0      0.019   13.9   1.0    1.7  2  IFT57     Intra-flagellar transport protein 57
      0.058   13.6  11.0        1.6    9.0   0.0    3.6  4  VPS11_C   Vacuolar protein sorting protein 11 C terminal
       0.13   12.4   3.6      0.052   13.7   1.1    1.7  2  UPF0242   Uncharacterised protein family (UPF0242) N-terminus
       0.56   10.5   4.8       0.22   11.8   1.5    2.1  3  DUF4164   Domain of unknown function (DUF4164)


Domain annotation for each model (and alignments):
>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0045      37      83 ..      36      83 ..       8      89 .. 0.89
   2 ?    1.1   0.1      0.23   4.5e+02      25      62 ..     127     164 ..     112     202 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
                HHHHHHHH.HH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHHHHHHHT CS
     PI_PP_I 37 llkWeeik.ktslsLeedLnkiannktplPsWfnelskaqqellrvla 83
                 + W+ei  ++++sL+ ++++i+ +   + +++++l+k+ + +lrv+ 
  CDO68235.1 36 AQAWDEIAtTEASSLNDEIRNIKDGFRAISTYLSKLDKRSKPILRVFF 83
                578****978889*********************************96 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.23
                 SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHCT-S CS
     PI_PP_I  25 slkklkqdlnqfllkWeeikktslsLeedLnkiannkt 62 
                 sl+ lk++l +f++   + ++ + s+ +  ++i+ + +
  CDO68235.1 127 SLNALKKELMKFTKLLGHKRDVAASMRKKFERISDDIK 164
                 66677777777777777777777777777777766544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.059   1.2e+02      87     116 ..      45      74 ..      30      79 .. 0.80
   2 !   14.1   0.4   1.8e-05     0.036      41      96 ..     147     202 ..     125     204 .] 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.059
     DUF1664  87 eevtevredlseigedvesvkeaveglesk 116
                  e +++++++++i++ ++++++  ++l+++
  CDO68235.1  45 TEASSLNDEIRNIKDGFRAISTYLSKLDKR 74 
                 566788899999999999999999999876 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl 96 
                 d+ +s+ k+ e++s++++  k++L++r+++     +e  +  +++ +e++++++ l
  CDO68235.1 147 DVAASMRKKFERISDDIKVFKDELQQRLESDKMPSQELHDNLAKTLNEISSLEDRL 202
                 77899*************************99999999999999999999998876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.54   1.1e+03     264     274 ..      50      60 ..      13      76 .. 0.56
   2 !   16.6   0.7   1.4e-06    0.0028     194     275 ..     121     202 ..      93     204 .] 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.54
        Spc7 264 sesevsrlkee 274
                  ++e++++k+ 
  CDO68235.1  50 LNDEIRNIKDG 60 
                 22222222222 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.4e-06
        Spc7 194 esidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeev 275
                 + +++ +L++l++el +  + + +k++  a+++++ e+++++i+  k++ ++  e  +   + l+ +   + +e+s+l++++
  CDO68235.1 121 AFVESGSLNALKKELMKFTKLLGHKRDVAASMRKKFERISDDIKVFKDELQQRLESDKMPSQELHDNLAKTLNEISSLEDRL 202
                 3378999***********************************************************************9987 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.23   4.7e+02      89     124 ..      38      59 ..      14      80 .. 0.51
   2 !   15.3   0.4   7.5e-06     0.015      66     120 ..     149     203 ..     101     204 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.23
    MIP-T3_C  89 mWrseyrqqaeelaeerrateealeplkaqlaelee 124
                  W ++++ +a  l              ++++ ++++
  CDO68235.1  38 AWDEIATTEASSL--------------NDEIRNIKD 59 
                 3444444444444..............444444433 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.5e-06
    MIP-T3_C  66 vnPLgklldfiqdDidsMqrELemWrseyrqqaeelaeerrateealeplkaqla 120
                 +  + k ++ i dDi   + EL++  +  +  ++el+++ + t ++++ l+++la
  CDO68235.1 149 AASMRKKFERISDDIKVFKDELQQRLESDKMPSQELHDNLAKTLNEISSLEDRLA 203
                 4567799********************************************9997 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.6   5.2e+03      32      41 ..      51      60 ..      34      74 .. 0.52
   2 !   15.0   1.6   6.8e-06     0.013     152     237 ..     117     203 ..     102     204 .] 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
     Leu_zip 32 vDEvtelldg 41
                +DE++++ dg
  CDO68235.1 51 NDEIRNIKDG 60
                2333333333 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 6.8e-06
     Leu_zip 152 lEkqatsaleeksklekalkelqkelgekkdeke.nskeiskleeklaelkldlektleektasaksleedlastkhelLkvqeqLe 237
                 +E++a       ++l+k+l +  k lg+k+d+++   k+++++++ ++ +k +l++ le+ ++ +++l+++la+t +e+ +++++L+
  CDO68235.1 117 IENNAFVESGSLNALKKELMKFTKLLGHKRDVAAsMRKKFERISDDIKVFKDELQQRLESDKMPSQELHDNLAKTLNEISSLEDRLA 203
                 566666666777899************998887758899***************************************999999885 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.39   7.7e+02     255     292 ..      36      74 ..      12      78 .. 0.62
   2 ?   13.9   1.0   9.7e-06     0.019     278     354 ..     127     201 ..     108     204 .] 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.39
       IFT57 255 sktlekiesrEk.ylnsqleellqeyreaqeelsevkek 292
                 +++ ++i + E   ln ++++  + +r+ ++ ls++ ++
  CDO68235.1  36 AQAWDEIATTEAsSLNDEIRNIKDGFRAISTYLSKLDKR 74 
                 455556665553246666666666666666666665555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 9.7e-06
       IFT57 278 eyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvkikkaltklkkEikqmdvr 354
                  ++++++el ++++ +    +   ++++++++is++++  k e+++r    +D  p +++ ++l+k  +Ei++++ r
  CDO68235.1 127 SLNALKKELMKFTKLLGHKRDVAASMRKKFERISDDIKVFKDELQQRL--ESDKMPSQELHDNLAKTLNEISSLEDR 201
                 566777788888888888888888888888888888888888888884..468888888888888888888887755 PP

>> VPS11_C  Vacuolar protein sorting protein 11 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0008       1.6      26      41 ..      51      70 ..      46      70 .. 0.76
   2 ?   -2.8   0.2         4     8e+03      21      35 ..     102     116 ..     101     118 .. 0.76
   3 ?    7.1   0.9    0.0032       6.3       6      32 ..     151     179 ..     147     180 .. 0.89
   4 ?    3.1   0.1     0.058   1.2e+02      15      33 ..     182     203 ..     180     204 .] 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
     VPS11_C 26 ee...s.eDrFkvvadyFGR 41
                ++   + +D+F+ ++ y+++
  CDO68235.1 51 NDeirNiKDGFRAISTYLSK 70
                44444459**********98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4
     VPS11_C  21 FkaaLeeseDrFkvv 35 
                 F + L+es+ +F  +
  CDO68235.1 102 FDDFLDESRTKFVAI 116
                 788899998888766 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0032
     VPS11_C   6 elrraQeesadrhdlFkaaLee..seDrF 32 
                  +r++ e+++d+   Fk++L++  ++D++
  CDO68235.1 151 SMRKKFERISDDIKVFKDELQQrlESDKM 179
                 689999***************98878875 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.058
     VPS11_C  15 adrhdlFkaaLee..s.eDrFk 33 
                  + hd + + L+e  s eDr +
  CDO68235.1 182 QELHDNLAKTLNEisSlEDRLA 203
                 689***********98999975 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.3   2.7e+03     102     102 ..      31      31 ..       6      78 .. 0.55
   2 ?   13.7   1.1   2.6e-05     0.052      99     161 ..     129     195 ..     101     204 .] 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
     UPF0242 102 k 102
                  
  CDO68235.1  31 Y 31 
                 1 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.6e-05
     UPF0242  99 eeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaek....qellqeyqetieeq 161
                 + Lk+el + +++l + +   +++++k e i+ d++ +k el+++L+      qel++++++t++e 
  CDO68235.1 129 NALKKELMKFTKLLGHKRDVAASMRKKFERISDDIKVFKDELQQRLESDkmpsQELHDNLAKTLNEI 195
                 6789999999999999999999************************986222267777777777775 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.7   7.4e+03       6       6 ..      57      57 ..      41      75 .. 0.54
   2 ?   -2.1   0.0       2.5     5e+03      48      64 ..      99     115 ..      96     140 .. 0.61
   3 ?   11.8   1.5   0.00011      0.22       3      52 ..     149     203 ..     147     204 .] 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.7
     DUF4164  6 l 6 
                +
  CDO68235.1 57 I 57
                1 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
     DUF4164  48 rsRLaeeLdqaearaar 64 
                 r + ++ Ld+++ +  +
  CDO68235.1  99 RRKFDDFLDESRTKFVA 115
                 66666666666655444 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00011
     DUF4164   3 tkeleaaltrLeaaldsLEkavdrrleaerkr.....deleaeiealgedrsRLa 52 
                 + ++++  +r++  ++   + +++rle++++      d+l+++++++ + + RLa
  CDO68235.1 149 AASMRKKFERISDDIKVFKDELQQRLESDKMPsqelhDNLAKTLNEISSLEDRLA 203
                 567788889**********************999999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      778  (0.0433934); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1490.10
//
Query:       CDO68236.1  [L=427]
Description: hypothetical protein BN946_scf184784.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-08   32.9   0.0    6.7e-08   32.3   0.0    1.3  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.8e-12   6.7e-08       2      54 .]     242     294 ..     241     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.8e-12
                 EEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSH..SHHHHHHHHHH CS
      Chromo   2 eVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekc..fqelideFkkr 54 
                 e++ ++d r    +   eYl++Wk+lp +e++W p+++l       el+++F++r
  CDO68236.1 242 EPQSVLDCRRTGRRF--EYLIHWKDLPAEEDSWTPITDLPTTpaVSELLERFHRR 294
                 67899**********..***********************99998899****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3139.47
//
Query:       CDO68237.1  [L=434]
Description: hypothetical protein BN946_scf184784.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3260.52
//
Query:       CDO68238.1  [L=1083]
Description: hypothetical protein BN946_scf184842.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-06   26.3   0.2    9.9e-06   25.4   0.2    1.5  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    0.00021   20.9   1.5    0.00046   19.8   1.5    1.5  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.033   14.1   0.1      0.081   12.9   0.1    1.6  1  Thiamine_BP      Thiamine-binding protein
      0.042   13.6   1.3       0.11   12.3   1.3    1.8  1  Prenyltrans      Prenyltransferase and squalene oxidase repea
       0.36   11.0   4.7        2.3    8.4   1.9    2.7  2  zf-CCHC          Zinc knuckle
       0.53    9.8   3.1       0.97    8.9   3.1    1.4  1  MscS_porin       Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.2   3.3e-09   9.9e-06      28     118 ..     684     786 ..     652     787 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.3e-09
  Exo_endo_phos_2  28 lksp.kiiilGDfNakhplWgsedtds......sargeeLiefleehslsllnllksg.ptfkssng..sstiDltltsdnlals....klele 107
                       ++  + i lGDfN++h+ W+++ ++        +++e L+++l+  +l+ + l+  g pt +  ++  ++  D ++ ++ l+++      +  
       CDO68238.1 684 DDDVhQAIWLGDFNRHHQRWDDPGNTHlftvgnVRKAEVLTRYLDVLGLE-MALPA-GiPTLEHMRTknQTRPDNVFCTKGLRDHlrscLVRPD 775
                      333368999*************877779999*99****************.44444.447777777766899**********999985522333 PP

  Exo_endo_phos_2 108 eedlgSDHrpi 118
                         l +DH pi
       CDO68238.1 776 LRPLRTDHYPI 786
                      35688888887 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.5   1.5e-07   0.00046      24     166 ..     566     709 ..     553     789 .. 0.55

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
                    HHHHHCTT...SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTE.EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE CS
                    xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  24 dlltayda...DvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpl.tslfrrtfiefndlvaalrreplaakleqlni 115
                    dll++ ++   D++++QE + d ls++  ++ ++ ++++s++       +++   ++l++ +l t       i   d  a ++r+  a+ +  + +
     CDO68238.1 566 DLLHKAHPrdfDIIAIQEPYLDRLSLTRSTSHWRVVYPSSHH----ADAARRTRSVILVSKRLsTNDWNPISIPHSDVTAITIRTEGAPAVHLF-N 656
                    45555566888********************99666666666....566777777888888883444444444444444444444444444444.4 PP

                    ..CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGH CS
                    ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 ..ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlr 166
                       +  +   v+ + ++   l  +++ +d  + +i++GDfN ++  +d +  +
     CDO68238.1 657 lyVDASSDTAVHAAARAMRNLGDWDDDDDDVHQAIWLGDFNRHHQRWDDPGNT 709
                    595555555555555555555555555555556*********99888877644 PP

>> Thiamine_BP  Thiamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.7e-05     0.081      16      64 ..     125     173 ..     111     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
                  HHHHHHHHHHHHTTSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTT CS
  Thiamine_BP  16 skyVakvvevlkesglkyeltpmgTtiegeldevmevvkkahealfeaG 64 
                   ++Va +v+  +e++l+ +l   +T +e  ++evm+ +++a+++l+  G
   CDO68238.1 125 FEAVATAVAERAEEQLTLRLDEHTTRMETRVEEVMAEIEEAKKELLGYG 173
                  67999*************************************9998765 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   3.6e-05      0.11      12      35 ..     424     447 ..     422     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
                  HHSHTTS-BBSSTTSSBBHHHHHH CS
  Prenyltrans  12 scQnedGGwggrpgsesdtyytyw 35 
                  +cQ +dG+++ ++  e+dt++t+ 
   CDO68238.1 424 RCQSYDGHFARDCSAEVDTCATCA 447
                  79********************95 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.9   0.00078       2.3       3      17 ..     422     437 ..     420     438 .. 0.79
   2 ?    2.2   0.0     0.072   2.2e+02       3      11 ..     465     473 ..     463     477 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00078
                 TSSSSSS.SSTTTTST CS
     zf-CCHC   3 CynCGep.GHiardCp 17 
                 C +C++  GH+ardC+
  CDO68238.1 422 CARCQSYdGHFARDCS 437
                 77777755*******6 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.072
                 TSSSSSSSS CS
     zf-CCHC   3 CynCGepGH 11 
                 C nC + GH
  CDO68238.1 465 CVNCSQDGH 473
                 88******* PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.1   0.00032      0.97      80     204 ..     148     269 ..     122     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00032
  MscS_porin  80 leeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsnnnr 178
                 ++  e r++++ ++ +e++++l  +  ql  + +   +a ++lt+ar+ lq   +   + + +g++l++   ++l +  a  +  + + e ++     r
  CDO68238.1 148 TTRMETRVEEVMAEIEEAKKELLGYGRQLKDACDWVGQAEAALTAARTDLQSAAA---AAQVPGAPLNPPPTVSLDMAPARTRRAVTMAEHLQRQVLIR 243
                 57789***********************************************999...55566888888888888888888888888888888877777 PP

  MscS_porin 179 qeLlklqrdllklriqqleqelqaLq 204
                  + l +  d+l    + l q ++a++
  CDO68238.1 244 GATLAISGDELDTNAAALRQAVAAVE 269
                 77777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 6706.49
//
Query:       CDO68239.1  [L=339]
Description: hypothetical protein BN946_scf184842.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2359.46
//
Query:       CDO68240.1  [L=280]
Description: hypothetical protein BN946_scf184842.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1877.68
//
Query:       CDO68241.1  [L=253]
Description: hypothetical protein BN946_scf184842.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-23   80.0   0.0    1.6e-22   79.3   0.0    1.4  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P
    1.1e-22   80.0   0.0    1.6e-22   79.5   0.0    1.2  1  Ribosomal_L10  Ribosomal protein L10
  ------ inclusion threshold ------
      0.086   13.2   0.3       0.16   12.3   0.3    1.5  1  DinI           DinI-like family


Domain annotation for each model (and alignments):
>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   2.7e-26   1.6e-22       1      71 []     126     204 ..     126     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2.7e-26
  RL10P_insert   1 AraGtiAtedviipagplela........PgsiepeLrklglptklkkGkivleedylvckkGetltseqaqlLklLgi 71 
                   Ar+G++A+++v++pagp+ ++        P++ ep+Lrklgl t++++G+ +l+  +++c+kG+t+t+eqaqlLkl gi
    CDO68241.1 126 ARTGNKASRTVTLPAGPVMQQhsnppepfPHNEEPQLRKLGLRTRMDRGVPTLDVPHTICEKGKTITPEQAQLLKLVGI 204
                   9***************999999******************************************************998 PP

>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   2.6e-26   1.6e-22       1      98 [.      18     120 ..      18     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 2.6e-26
                    SSCCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS..S.....SCGCCSSSEEEEEESS-TCH CS
  Ribosomal_L10   1 ktkekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeee.k.....lkellkgpvalvftnedpva 90 
                    kt+e+K++l++e++e+++k ++++++++ ++++a l+++R+ ++++ a++++++  +m +Al++t+eee k     l++++kg+v+l+ft+++p++
     CDO68241.1  18 KTREQKNALLQEVQENADKWQYCWLFEVGNMRNAHLKTVRRLWKDT-ARIFFGRGAVMAKALGTTPEEEhKlglhkLAKQIKGQVGLFFTDSPPAE 112
                    69*******************************************9.********************985599999******************** PP

                    HHHCCCCC CS
  Ribosomal_L10  91 lakvleef 98 
                    +++++++f
     CDO68241.1 113 VIEWFDDF 120
                    *******9 PP

>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.7e-05      0.16      35      62 ..      10      37 ..       3      38 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                EEEES--HHHHHHHHHHHHHHHHTHHHH CS
        DinI 35 lsveGaskedkeriseiLQetwesADdW 62
                +s++  +k+ +e+ + +LQe+ e+AD+W
  CDO68241.1 10 VSLTKVAKKTREQKNALLQEVQENADKW 37
                5666678999****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1829.55
//
Query:       CDO68242.1  [L=334]
Description: hypothetical protein BN946_scf184842.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-32  110.6   1.8    1.3e-14   54.3   0.1    4.2  4  HEAT_2     HEAT repeats
    3.7e-24   82.9   1.4     0.0007   20.0   0.1    7.3  8  HEAT_PBS   PBS lyase HEAT-like repeat
    5.5e-11   41.8   1.7      0.046   14.0   0.0    5.2  6  HEAT       HEAT repeat
    2.7e-05   24.0   0.1       0.11   12.6   0.1    2.8  2  Arm        Armadillo/beta-catenin-like repeat
    5.9e-05   23.5   2.2       0.58   10.7   0.4    4.2  4  HEAT_EZ    HEAT-like repeat
     0.0042   17.2   0.0        1.9    8.5   0.0    3.4  3  Cnd1       non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.082   12.8   0.0          1    9.3   0.0    2.4  2  zf-CCCH_6  Chromatin remodeling factor Mit1 C-terminal Zn fin


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.042   1.1e+02      16      43 ..      28      55 ..      10      57 .. 0.74
   2 !   54.3   0.1   5.2e-18   1.3e-14      11      88 .]      54     132 ..      49     132 .. 0.93
   3 !    8.2   0.1    0.0012       3.1      17      47 ..     201     231 ..     184     236 .. 0.74
   4 !   45.2   0.0   3.5e-15   9.1e-12       5      84 ..     221     302 ..     218     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.042
      HEAT_2 16 vrraairaLgrignpealpaLvellede 43
                 r +a+ +L +++n+ea++++ +   de
  CDO68242.1 28 NRFRALFTLKSLKNDEAVDIISRGFADE 55
                4889**************9998766555 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 5.2e-18
      HEAT_2  11 dpdpevrraairaLgrignpealpaLvell..ededpavRraaaeaLgaigdpealpaLkellddddddvvReaAaeaLa 88 
                 d++  ++++ + +Lg+++n++alp L ++l  e edp+vR++aaeaLgai + ++ ++Lk++l+ d+++ vRe  ++aLa
  CDO68242.1  54 DESALLKHELAYCLGQMKNTKALPVLENVLanEKEDPMVRHEAAEALGAISSMSSTDILKKYLN-DPEQCVRETCEIALA 132
                 89999***********************9977789**************************995.789999**9999986 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0012
      HEAT_2  17 rraairaLgrignpealpaLvellededpav 47 
                 r++a  aL +ig+p a++aL    +d ++  
  CDO68242.1 201 RYRAMFALRNIGTPAAVDALAAGFSDRSALF 231
                 7889999999999999999988777776655 PP

  == domain 4  score: 45.2 bits;  conditional E-value: 3.5e-15
      HEAT_2   5 lqalendpdpevrraairaLgrignpealpaLvelled..edpavRraaaeaLgaigdpealpaLkellddddd.dvvReaAa 84 
                  +   +d +   +++++ + g++ ++ ++paL+ +l+d  e+ +vR++aaeaLg i++pe+lp Lke++  +d  +vvRe+  
  CDO68242.1 221 AAGF-SDRSALFKHEIAFVFGQLLSTHSVPALLAVLQDsqESDMVRHEAAEALGGIATPEVLPYLKEYMSKPDApRVVRESCQ 302
                 5555.7899999************************87557789***************************997588888765 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       3.2   8.3e+03      17      26 ..       9      18 ..       6      19 .. 0.74
   2 ?    2.4   0.0      0.13   3.4e+02       2      23 ..      29      50 ..      29      54 .. 0.83
   3 !   11.5   0.0   0.00015       0.4       3      26 ..      61      84 ..      59      85 .. 0.91
   4 !   15.5   0.0   8.1e-06     0.021       1      27 []      92     118 ..      92     118 .. 0.96
   5 ?   -0.9   0.0       1.5     4e+03       8      15 ..     130     137 ..     123     155 .. 0.76
   6 !   20.0   0.1   2.7e-07    0.0007       2      25 ..     201     224 ..     200     226 .. 0.91
   7 ?    5.3   0.0     0.015        39       5      27 .]     235     257 ..     232     257 .. 0.80
   8 !   19.1   0.0   5.7e-07    0.0014       1      24 [.     264     287 ..     264     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
                GHHHHHHHCT CS
    HEAT_PBS 17 aipaLleaLq 26
                 ++aL +aL 
  CDO68242.1  9 TLAALEAALL 18
                5789999985 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                HHHHHHHHHHCTSGGGHHHHHH CS
    HEAT_PBS  2 RraAakaLgqlgdeeaipaLle 23
                R +A++ L  l+ +ea++++ +
  CDO68242.1 29 RFRALFTLKSLKNDEAVDIISR 50
                6789999999999*****9865 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00015
                HHHHHHHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS  3 raAakaLgqlgdeeaipaLleaLq 26
                ++ a+ Lgq++ + a+p+L ++L+
  CDO68242.1 61 HELAYCLGQMKNTKALPVLENVLA 84
                789*******************97 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 8.1e-06
                 HHHHHHHHHHHCTSGGGHHHHHHHCTC CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaipaLleaLqd 27 
                 vR++Aa+aLg++ +  + ++L++ L+d
  CDO68242.1  92 VRHEAAEALGAISSMSSTDILKKYLND 118
                 9**********************9987 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.5
                 HHHHCTSG CS
    HEAT_PBS   8 aLgqlgde 15 
                 aL+++ ++
  CDO68242.1 130 ALAKIEWD 137
                 99999993 PP

  == domain 6  score: 20.0 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHCTSGGGHHHHHHHC CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaLleaL 25 
                 R++A++aL ++g+++a++aL +  
  CDO68242.1 201 RYRAMFALRNIGTPAAVDALAAGF 224
                 9*******************9866 PP

  == domain 7  score: 5.3 bits;  conditional E-value: 0.015
                 HHHHHHHCTSGGGHHHHHHHCTC CS
    HEAT_PBS   5 AakaLgqlgdeeaipaLleaLqd 27 
                  a+  gql ++ ++paLl++Lqd
  CDO68242.1 235 IAFVFGQLLSTHSVPALLAVLQD 257
                 6666677777899********98 PP

  == domain 8  score: 19.1 bits;  conditional E-value: 5.7e-07
                 HHHHHHHHHHHCTSGGGHHHHHHH CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaipaLlea 24 
                 vR++Aa+aLg + ++e++p L+e 
  CDO68242.1 264 VRHEAAEALGGIATPEVLPYLKEY 287
                 9********************985 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.54   1.4e+03       7      27 ..      50      70 ..      45      71 .. 0.79
   2 !   14.0   0.0   1.8e-05     0.047       2      29 ..      76     105 ..      75     107 .. 0.82
   3 !    7.5   0.0    0.0021       5.4       4      27 ..     111     134 ..     110     134 .. 0.85
   4 ?   -2.6   0.0         4     1e+04       5      28 ..     220     243 ..     216     245 .. 0.62
   5 !   14.0   0.0   1.8e-05     0.046       2      28 ..     248     276 ..     248     277 .. 0.94
   6 ?   -2.4   0.0       3.3   8.5e+03       2      20 ..     281     301 ..     280     304 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.54
                HHHT-SSHHHHHHHHHHHHHH CS
        HEAT  7 kllsDpspeVReaAakaLgal 27
                +   D+s+      a++Lg++
  CDO68242.1 50 RGFADESALLKHELAYCLGQM 70
                556788888888999****97 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD..pspeVReaAakaLgalae 29 
                 lP+l + l    ++p VR  Aa+aLga+++
  CDO68242.1  76 LPVLENVLANekEDPMVRHEAAEALGAISS 105
                 6777777744479***************86 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0021
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 +l k l+Dp+  VRe++  aL+++
  CDO68242.1 111 ILKKYLNDPEQCVRETCEIALAKI 134
                 57799***********98888765 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l    sD s+      a  +g+l+
  CDO68242.1 220 LAAGFSDRSALFKHEIAFVFGQLL 243
                 555566666666666677777776 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHT-..SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD..pspeVReaAakaLgala 28 
                 +P+ll  l+D  +s  VR  Aa+aLg +a
  CDO68242.1 248 VPALLAVLQDsqESDMVRHEAAEALGGIA 276
                 699***********************998 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 3.3
                 HHHHHHHHT-.SSHHH.HHHH CS
        HEAT   2 lPlllkllsD.pspeV.ReaA 20 
                 lP l + +s  ++p+V Re++
  CDO68242.1 281 LPYLKEYMSKpDAPRVvRESC 301
                 666666654434555437665 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00079         2      12      39 ..      74     103 ..      69     105 .. 0.88
   2 !   12.6   0.1   4.2e-05      0.11      14      40 ..     248     276 ..     241     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00079
                 THHHHHHHHTT..TSSHHHHHHHHHHHHHH CS
         Arm  12 GavppLvrLLs..sedeevqeeAawALsNL 39 
                  a+p+L + L    ed++v++eAa AL+ +
  CDO68242.1  74 KALPVLENVLAneKEDPMVRHEAAEALGAI 103
                 5899999********************855 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.2e-05
                 HHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLs..sedeevqeeAawALsNLa 40 
                 vp+L++ L+   e+++v++eAa AL+ +a
  CDO68242.1 248 VPALLAVLQdsQESDMVRHEAAEALGGIA 276
                 9************************9887 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00073       1.9      28      55 .]      74     103 ..      73     103 .. 0.83
   2 ?   -3.0   0.0       4.7   1.2e+04      37      55 .]     116     134 ..     116     134 .. 0.77
   3 ?   -2.0   0.0       2.1   5.5e+03      44      55 .]     198     211 ..     174     211 .. 0.63
   4 !   10.7   0.4   0.00022      0.58      14      53 ..     235     273 ..     200     275 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00073
     HEAT_EZ  28 eilpaLlalL.nddsd.eVRaaAagaLgnl 55 
                 ++lp L + L n ++d +VR  Aa aLg++
  CDO68242.1  74 KALPVLENVLaNEKEDpMVRHEAAEALGAI 103
                 5799999999566666799*********87 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.7
     HEAT_EZ  37 LnddsdeVRaaAagaLgnl 55 
                 Lnd+++ VR+++ +aL+++
  CDO68242.1 116 LNDPEQCVRETCEIALAKI 134
                 7888888999988888765 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.1
     HEAT_EZ  44 V..RaaAagaLgnl 55 
                    R+ A  aL+n+
  CDO68242.1 198 LfeRYRAMFALRNI 211
                 35588888898886 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00022
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnd..dsdeVRaaAagaLg 53 
                 +a++ ++ll++     +paLla L+d  +sd+VR  Aa aLg
  CDO68242.1 235 IAFVFGQLLST---HSVPALLAVLQDsqESDMVRHEAAEALG 273
                 55555555554...4467777777774455599********8 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0074        19      25      94 ..      47     112 ..      40     114 .. 0.70
   2 !    8.5   0.0   0.00076       1.9      24      48 ..     110     134 ..     108     148 .. 0.81
   3 ?    0.6   0.0       0.2   5.1e+02      25      54 ..     219     248 ..     212     305 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0074
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilndmvkekgflselakll..eDenprVvanalaalteiseksenaiy 94 
                  + +++ De++  +   a+++ ++      k+ + l  l++ l  e e+p+V+  a  al  is++s++ i+
  CDO68242.1  47 IISRGFADESALLKHELAYCLGQM------KNTKALPVLENVLanEKEDPMVRHEAAEALGAISSMSSTDIL 112
                 556666666666666666666554......4555566677777556789*****************888776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00076
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL 48 
                 + L+k L+D+++ VR+t+ i++ak+
  CDO68242.1 110 DILKKYLNDPEQCVRETCEIALAKI 134
                 5688999999999999999999987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.2
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilndmv 54 
                  L ++++D+++  +   a+v+ +L++   v
  CDO68242.1 219 ALAAGFSDRSALFKHEIAFVFGQLLSTHSV 248
                 555666666666666666666666544322 PP

>> zf-CCCH_6  Chromatin remodeling factor Mit1 C-terminal Zn finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.23     6e+02      20      50 ..      70     100 ..      66     103 .. 0.86
   2 ?    9.3   0.0    0.0004         1      20      53 .]     242     275 ..     240     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.23
                 GSSHHHHHHHHHHHHT--S-HHHHHHHHHHH CS
   zf-CCCH_6  20 lksetqvrrmleaLkeStEprelveeAkkyL 50 
                 +k+ +++ ++ + L + +E++ +++eA + L
  CDO68242.1  70 MKNTKALPVLENVLANEKEDPMVRHEAAEAL 100
                 6788889999999************999877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0004
                 GSSHHHHHHHHHHHHT--S-HHHHHHHHHHHHTT CS
   zf-CCCH_6  20 lksetqvrrmleaLkeStEprelveeAkkyLrgi 53 
                 l s   v ++l  L+ S+E++ +++eA + L gi
  CDO68242.1 242 LLSTHSVPALLAVLQDSQESDMVRHEAAEALGGI 275
                 678899*********************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2343.53
//
Query:       CDO68243.1  [L=1408]
Description: hypothetical protein BN946_scf184842.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-26   91.0   0.1    7.6e-25   87.8   0.1    2.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.1   4.3e-29   7.6e-25      52     317 ..     105     434 ..      97     442 .. 0.81

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 4.3e-29
     Plavaka  52 levikellgnpdfadeldyaP...ereytdekkgervysemmtgdwaweqqie.ek....p..tegatlvpvilssDKTtlsvftgnkeayPvYlsiGn 140
                  + ik+ +++   a++++y P   er++ d++++ervy e++      +  i+ ++    p       ++ ++l+sD T +s+f gn++a+P Y+  Gn
  CDO68243.1 105 CAEIKKTFSSDPAARDFVYDPylvERQLPDTTETERVYGELYNSPSFVQEDIRlQNsprePgcDLPRAIAAIMLWSDATVVSQF-GNQKAWPAYMYFGN 202
                 5567777777777889999995445666677667********99999999844443322234444689****************.************** PP

     Plavaka 141 ipkevrrkasrnavvllayLpi.............................pklkkikkskefrklfkrqlfHaclaril.epLkeagkkgvvmtcadg 209
                  +k +r +++ +a   +ay  +                             +++   + s+   ++++r+lfHa  + +l e   +a ++g+v+ c dg
  CDO68243.1 203 QSKYARARPTARAAHHIAYFTVvsvfgvtqingmliylprqlpdevqdfvrAQTGGKSASAPLLTHCRRELFHAQWECLLdEEFLHAYEHGIVIDCMDG 301
                 **********************************************99988666445557777777*************944689999*********** PP

     Plavaka 210 hvrrvipilaayiaDypEqvlvacivqg...wCpkctakkkelgdl...eeselrtreetlelleeaade...................lkklwkeygl 283
                 + rr++p +  y aDy E++l+a  + +    Cp c ++ + +++    ++se r+r+   ++ +e+  +                    ++l++e+ l
  CDO68243.1 302 VRRRIYPRIFTYSADYLEKMLIATLRDKgrcPCPHCLINFDAIENMgtsDDSENRSRNIRGTV-AEQDARvqearniiynegyvvnsdhVENLLREQSL 399
                 *************************7665446789****999987543344455555443333.3332224567889999999999888888******* PP

     Plavaka 284 kgviepFwedlpr.adihelltpDlLHqlikgvfk 317
                 +++ + F +   +  +i ++l  D LH++  gv+k
  CDO68243.1 400 VPTRNAFSRLERFgFNIRDALVVDQLHEFELGVWK 434
                 *******87444337*************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.50
# Mc/sec: 8489.00
//
Query:       CDO68244.1  [L=568]
Description: hypothetical protein BN946_scf184842.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-11   42.6   0.5    1.8e-09   38.2   0.5    2.3  1  Adaptin_binding  Alpha and gamma adaptin binding protein p34
  ------ inclusion threshold ------
      0.069   12.5   0.1       0.12   11.7   0.1    1.2  1  Terpene_synth_C  Terpene synthase family, metal binding domai
        1.7    8.5   3.9        1.5    8.7   0.0    2.3  2  TMEM154          TMEM154 protein family


Domain annotation for each model (and alignments):
>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.5     3e-13   1.8e-09       4     120 ..     177     543 ..     176     544 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3e-13
  Adaptin_binding   4 GieRirEaLethmWsglelkkqtaslsnrnaslet........................................................... 38 
                      G+ R+++aL+t mW++l +++ t++ ++r  +l +                                                           
       CDO68244.1 177 GLPRVIDALSTIMWPSLVQSQSTRQRKSRARELVGwaieeegdeglraliadpsastdahttdasiaennvrksrmqremeelerwledkesgs 270
                      889****************9999999999999999***************************99999999999999999999999999999999 PP

  Adaptin_binding  39 .............................................................................................. 38 
                                                                                                                    
       CDO68244.1 271 glqyarsrpdgrlsgppvteaerdqqaeawvtsapvtsvegwediltppairtpradddpvaaltaehgfeddfadfvsgtsdahllhphglgh 364
                      9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

  Adaptin_binding  39 ...................................................................................eadeaqlekee 49 
                                                                                                         +a ea   ++ 
       CDO68244.1 365 gedrllevsydvarltpmhtgasyrsmtsvsdfggeeglyverdelqsggygvlgeddndpdlpsraeiletsrrlfgaavfaAAPEAGTATAA 458
                      9999999999999999999999999999999999999999999999999999999999999999999999999999999999977777777777 PP

  Adaptin_binding  50 eeqdpsqpastepdksaaesesadaef............lfggdeaarle..........dlesllsklqqakdnvrnlpd.eeRkkeAakval 120
                      ++++  +pa  +p+ + + s+s++               +         e          dl +++s lq +k + + +++ +eR++ Aa+val
       CDO68244.1 459 TSSSSFEPATAPPTSEPSVSTSGSSAAnpdlsadlsldsE---------EgdddhsfapfDLSRVFSALQGMKAEIAGMENeDERRRAAARVAL 543
                      7777777777777776666666555555666665443322.........2444566778*********************************96 PP

>> Terpene_synth_C  Terpene synthase family, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.9e-05      0.12       9      41 ..     246     278 ..     242     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
  Terpene_synth_C   9 nllqslhqkElkelsrWwkelglasklsfaRdr 41 
                      n+ +s  q+E++el+rW ++ +  s+l++aR r
       CDO68244.1 246 NVRKSRMQREMEELERWLEDKESGSGLQYARSR 278
                      56678889***********************98 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00026       1.5     102     134 ..     234     267 ..     193     271 .. 0.83
   2 ?   -0.7   1.6       0.2   1.2e+03       8      48 ..     455     492 ..     445     505 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00026
     TMEM154 102 dsenvkvpifEedvp.svmeiEmeeldkwmnsln 134
                 d  +   +i E++v  s m+ Emeel++w+++ +
  CDO68244.1 234 DAHTTDASIAENNVRkSRMQREMEELERWLEDKE 267
                 566667789999996267***********98765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.2
     TMEM154   8 gdtaletatleeesadatsaasteseslkqeeakeslssae 48 
                 ++ a+++   e+ +a++ts  s+ + s  ++ a +   sa+
  CDO68244.1 455 ATAATSSSSFEPATAPPTSEPSVST-S--GSSAANPDLSAD 492
                 4556666677777777766665522.2..222333333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3621.14
//
Query:       CDO68245.1  [L=278]
Description: hypothetical protein BN946_scf184842.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1906.50
//
Query:       CDO68246.1  [L=449]
Description: hypothetical protein BN946_scf184842.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.056   14.0   1.2      0.093   13.3   1.2    1.2  1  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.2   5.2e-06     0.093      61     109 ..     389     437 ..     380     443 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-06
      APG6_N  61 keeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelq 109
                 +++++ll eLk l++e+++l++ +  ++++leale+ e++ +   +e +
  CDO68246.1 389 ADRHALLGELKILQEEHASLRSRRTIIQAQLEALEAREAELLALLSESK 437
                 578899********************************99988777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2999.99
//
Query:       CDO68247.1  [L=210]
Description: hypothetical protein BN946_scf184842.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
          2    6.4   7.8        2.4    6.2   7.8    1.1  1  Sporozoite_P67  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.8   0.00013       2.4     111     225 ..      27     151 ..      23     198 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00013
  Sporozoite_P67 111 Gskedseedddeeeeednksts..skdgkgskkaqpgvssssgsttsqtdlstklsqtglg.asGshaqqdpavsvsgv.vgvpGlgvpGvG... 198
                     Gs+ ++++dd ++e ed  ++s  + d  +s+k + + sss+g +  ++ ++ + +++     +G+     p    s +  g+p l++pGv    
      CDO68247.1  27 GSNGGNKDDDAHDESEDAPAASgdASDRGNSRKRRRA-SSSAGASGQPRAANNNAQNAAAQnQAGAP-TTSPHARPSAIpPGAPPLAIPGVApqm 119
                     5555666666666666665554115555667777776.77777776666555544443333233333.333333333333466666666664221 PP

  Sporozoite_P67 199 ....vpGvg.gvgvlpgvgvprvgvapgvGvg 225
                          p  g  + + p    p++g  p  G g
      CDO68247.1 120 plehSPRQGqATPTSPNYAQPGAGYPPPPGAG 151
                     11112333333344555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1529.00
//
Query:       CDO68248.1  [L=835]
Description: hypothetical protein BN946_scf184842.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-12   46.8   0.0    3.3e-11   43.8   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
      9e-07   28.8   0.0    2.4e-06   27.4   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
    1.7e-06   28.0   0.0    3.2e-06   27.1   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    3.1e-05   24.6   0.0    8.9e-05   23.1   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
     0.0043   17.8   0.0      0.012   16.3   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.043   13.9   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
      0.042   13.3   0.0      0.079   12.4   0.0    1.4  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.3e-14   3.3e-11       1      71 [.     253     324 ..     253     335 .. 0.88
   2 ?   -0.3   0.0       0.7   1.8e+03      26      52 ..     638     665 ..     635     698 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.3e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvss 71 
                      vL+lGcGtG+++l++a+++++++++gvDi +   + ++    +   ++++vq+++ e+lpf++++fD+v+s 
       CDO68248.1 253 VLELGCGTGTWILNAAREWKDSHFVGVDIVPLHPDLIQVGSFDLASRITWVQANFlERLPFQNEEFDYVLSP 324
                      9******************99*********9999999977766667*********788************95 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.7
                      EEESSHHHHHHHHHHHHHTTT.TEEEEE CS
  Methyltransf_25  26 gvDiseemleaareraeeegl.nvefvq 52 
                       vD++e+ l+ ar++ +++   ++ f +
       CDO68248.1 638 VVDFQETILRSARRQGAAQPSdHLAFST 665
                      69***********999765445665555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   9.3e-10   2.4e-06       4      80 ..     250     323 ..     247     337 .. 0.88
   2 ?   -3.3   0.0       2.8   7.2e+03      34      61 ..     639     666 ..     639     686 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 9.3e-10
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDi...seeaielArenaqklgldnveFeqgdiee.leklledekfDlils 80 
                       +rvl+lGCGtG+ ++++a +  +++++vG+Di    ++ i++    ++    ++++  q+++ e l+  ++ e fD++ls
       CDO68248.1 250 PTRVLELGCGTGTWILNAA-REWKDSHFVGVDIvplHPDLIQVGSFDLA----SRITWVQANFLErLP--FQNEEFDYVLS 323
                      579****************.7789********94444799999999655....69*************..9*******987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.8
  Methyltransf_31  34 iDiseeaielArenaqklgldnveFeqg 61 
                      +D++e+ +++Ar   + + +d + F+ +
       CDO68248.1 639 VDFQETILRSARRQGAAQPSDHLAFSTS 666
                      7999999999999888888888888765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09   3.2e-06      20      87 ..     247     322 ..     219     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.2e-09
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIv 87 
                      + a+ rvL++GcGtG++   ++++++  +++gvD+ p   ++++       +++++++ +f  +  +++++ fd++ 
       CDO68248.1 247 KTAPTRVLELGCGTGTWILNAAREWKdsHFVGVDIVPLHPDLIQvgsfdlaSRITWVQANF-LERLPFQNEEFDYVL 322
                      57889************999988888789********99999999**99998888888888.788888999999996 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.5e-08   8.9e-05       1      67 [.     254     323 ..     254     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.5e-08
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvs 67 
                      L++GcGtG      a+    ++ vgvD+ +   +l +  + +   ++++v+a++ + lpf+++ fD v+s
       CDO68248.1 254 LELGCGTGTWILNAAREWkdSHFVGVDIVPLHPDLIQVGSFDLASRITWVQANFLErLPFQNEEFDYVLS 323
                      89*************88889********999998887777777779*******98559**********98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.8e-06     0.012       1      71 [.     254     322 ..     254     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.8e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvv 71 
                      Le+GcGtG+ +   +++ +d++++gvDi p         ++  + + ++++++ + + l++ +   + fD+v+
       CDO68248.1 254 LELGCGTGTWILNAAREWKDSHFVGVDIVPLHP----DLIQVGSFDLASRITWVQANFLERLPFqnEEFDYVL 322
                      8**************************977665....333333333445555555555555555556888886 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.7e-05     0.043      19      72 ..     246     309 ..     215     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                 S-.TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..........HHHTTEEEECS-CCC CS
        FtsJ  19 fk.pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........aplpgvttiqgditd 72 
                 fk   ++v++lg+++G w+  ++++ +  ++ v+vD+ p           ++ +++t +q+++++
  CDO68248.1 246 FKtAPTRVLELGCGTGTWILNAAREWKD-SHFVGVDIVPLhpdliqvgsfDLASRITWVQANFLE 309
                 4434568******************986.99*******998877777664455899999999865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.1e-05     0.079       5      33 ..     253     281 ..     249     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vle+GcG G+++++ A +  d  f+G++i
      CDO68248.1 253 VLELGCGTGTWILNAAREWKDSHFVGVDI 281
                     89*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5800.22
//
Query:       CDO68249.1  [L=503]
Description: hypothetical protein BN946_scf184842.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-43  147.9   1.5    2.8e-43  147.9   1.5    2.7  3  CDC37_N   Cdc37 N terminal kinase binding
    1.8e-30  105.3   0.0    3.5e-30  104.3   0.0    1.5  1  CDC37_M   Cdc37 Hsp90 binding domain
    4.7e-22   78.0   1.8    4.7e-22   78.0   1.8    2.4  2  CDC37_C   Cdc37 C terminal domain


Domain annotation for each model (and alignments):
>> CDC37_N  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   1.5   4.7e-47   2.8e-43       1     129 []       2     124 ..       2     124 .. 0.96
   2 ?    1.2   0.2      0.11   6.5e+02      62     100 ..     150     188 ..     131     218 .. 0.54
   3 ?   -2.7   0.0       1.7     1e+04      70      79 ..     431     440 ..     407     490 .. 0.58

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 4.7e-47
     CDC37_N   1 pldYskWDklELSDDsDievHPNVDkrsfirwKqrdihekreqrkaeikklklereindkllkridkllealkekeveeeevvfkalnesleekkeked 99 
                 pl+YskWD+lELSDDsDie HPNVDkrs+irwKqrdihekre+rk++i++lk+++++n+ l++r+++++++++++++ +    f++l e++ +++++ +
  CDO68249.1   2 PLNYSKWDRLELSDDSDIEGHPNVDKRSLIRWKQRDIHEKREMRKMRIAQLKADIACNEVLKPRLQQITQEVEAQGAPH----FSSLVERF-KTNPSPE 95 
                 79*********************************************************************99999988....********.9999999 PP

     CDC37_N 100 kpkaekeeeqptydemleklldqvkkelke 129
                 kp+++  +eq+tydeml +l+ qv++++k+
  CDO68249.1  96 KPPTN-APEQKTYDEMLLALMLQVWEDVKK 124
                 99998.677*****************9985 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
     CDC37_N  62 lkridkllealkekevee.eevvfkalnesleekkekedk 100
                  +  +kl ++l ++e+e+ ++++++ l e + +++    k
  CDO68249.1 150 DEHQEKLRKDLAHEEEEQhKKITMEDLHEGF-DSHYVPPK 188
                 4455566666555554443444555555555.33333333 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
     CDC37_N  70 ealkekevee 79 
                 +al++++ ee
  CDO68249.1 431 KALQSQSLEE 440
                 2233333332 PP

>> CDC37_M  Cdc37 Hsp90 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   5.9e-34   3.5e-30       1     117 [.     256     365 ..     256     366 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 5.9e-34
     CDC37_M   1 kFakiklgdykkseefllkhpeilseqqkdaLlmeafdaqlegkekkakqvvhqslllqyireLaklnkeglknviklFfkkiktkshqakklFledve 99 
                 +F++i+l+ y++s ef++ h +++   ++daLl++af aq +g++k a q+vhqslllqy+++L      g+ ++ ++Ff k+ + + +a+++F +dv 
  CDO68249.1 256 QFSRIPLKGYEESWEFIKAHRDVYVPGASDALLVAAFRAQSNGDSKWAMQCVHQSLLLQYCEKL------GK-DGPSMFFRKMISGDPRATSVFEKDVA 347
                 6***************************************************************......77.999*********************** PP

     CDC37_M 100 etynriktRakiikkeqe 117
                 +ty+++ +R++i k+e++
  CDO68249.1 348 DTYAHLVERVRISKAEEA 365
                 *************99986 PP

>> CDC37_C  Cdc37 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.3     0.017     1e+02      56      93 ..     133     169 ..     112     177 .. 0.66
   2 !   78.0   1.8   7.8e-26   4.7e-22       7      98 ..     408     501 ..     401     503 .] 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.017
     CDC37_C  56 llgeagilsleellvdatteegekelkeleeekkekkk 93 
                  l+ea + +l+e+lv+ ++   ek  k+l +e++e++k
  CDO68249.1 133 NLSEALVAGLKEHLVKMDE-HQEKLRKDLAHEEEEQHK 169
                 578888999*****76654.334444555555554443 PP

  == domain 2  score: 78.0 bits;  conditional E-value: 7.8e-26
     CDC37_C   7 sedp..eeqkkvevFeklppelqkAlktksLdevnkvlakmkveeAeeilellgeagilsleellvdatteegekelkeleeekkekkkeeeee 98 
                  ed+  + q++++vF+++ + lqkAl+++sL+evnkvl+ m++e Aee++++l+ agils++e  ++++t  ge+   e  +e++ + +ee+++
  CDO68249.1 408 IEDVrkALQMRWDVFQSFEEPLQKALQSQSLEEVNKVLGSMSIERAEEVVKMLDLAGILSFSESGIRDETGQGEEADDEGDAENEGEGAEESKN 501
                 555555789*************************************************************888888888888887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3694.36
//
Query:       CDO68250.1  [L=129]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-08   32.4   0.1    1.8e-07   31.4   0.1    1.6  1  DPBB_1       Lytic transglycolase
  ------ inclusion threshold ------
      0.011   15.6   0.2      0.018   14.9   0.1    1.4  1  Barwin       Barwin family
       0.13   12.4   0.8        6.7    7.0   0.0    2.7  3  FANCL_C      FANCL C-terminal domain
       0.17   11.3   0.4       0.17   11.3   0.4    2.2  3  zf-ribbon_3  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   3.9e-11   1.8e-07       3      83 .]      35     125 ..      33     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.9e-11
                 EEEEEE-CCC.-TTSSB--TTS-EEE-SSS........-TT-EEEETT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEEE CS
      DPBB_1   3 agsaslykdg.tacGecyevkcltaahktl........plgtycrvls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVky 83 
                 +g+ ++++ g  acG+  + +    a ++           +++++  + gk+ t  + D +p++  + iD+S+  fe+l+  + Gv++V++
  CDO68250.1  35 TGRGTWFDVGlGACGKTNKNSDKIIAISSDiygnggycDKKVKIKNTAnGKTATAIVRDECPSCGANDIDMSPSLFEELGSLDTGVLKVTW 125
                 57778887777777777766664444444467666654344445556679***************************************86 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   4.1e-06     0.018      59     102 ..      71     117 ..      60     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-06
      Barwin  59 scGkclrvtntatnaqvtvrivdqcsng...GldldvalfnkldtdG 102
                  c k ++++nta++++ t+ + d c       +d+ ++lf++l +  
  CDO68250.1  71 YCDKKVKIKNTANGKTATAIVRDECPSCganDIDMSPSLFEELGSLD 117
                 5999***************999*976652225788899**9987643 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   1.2e+03      48      60 ..      38      50 ..      31      59 .. 0.75
   2 ?    7.0   0.0    0.0015       6.7      47      69 ..      55      80 ..      50      81 .. 0.70
   3 ?    3.7   0.1     0.016        72      43      63 ..      80     100 ..      78     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
                S-TTT--EEE-TT CS
     FANCL_C 48 rqsfdvlfGeCPy 60
                 + fdv +G C  
  CDO68250.1 38 GTWFDVGLGACGK 50
                4789999999965 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0015
                SS-TTT-...-EEE-TTT-SEEEGGG CS
     FANCL_C 47 srqsfdv...lfGeCPyCkkkisvkf 69
                s +++++   ++G+  yC+kk+++k 
  CDO68250.1 55 SDKIIAIssdIYGNGGYCDKKVKIKN 80
                555555533369**********9885 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.016
                 HHHSSS-TTT--EEE-TTT-S CS
     FANCL_C  43 slkesrqsfdvlfGeCPyCkk 63 
                 +  ++++  +++  eCP C +
  CDO68250.1  80 NTANGKTATAIVRDECPSCGA 100
                 56778999999999*****86 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.23     1e+03       7      16 ..      47      56 ..      47      58 .. 0.69
   2 ?   -3.2   0.0       1.5   6.6e+03       7      11 ..      71      75 ..      71      79 .. 0.60
   3 ?   11.3   0.4   3.9e-05      0.17       4      16 ..      94     105 ..      93     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.23
  zf-ribbon_3  7 nCGa.plssdd 16
                 +CG+ + + +d
   CDO68250.1 47 ACGKtN-KNSD 56
                 599988.7666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.5
  zf-ribbon_3  7 nCGap 11
                 +C+++
   CDO68250.1 71 YCDKK 75
                 47664 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.9e-05
  zf-ribbon_3   4 rCPnCGaplssdd 16 
                  +CP+CGa+ + d+
   CDO68250.1  94 ECPSCGAN-DIDM 105
                  7******9.8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 874.83
//
Query:       CDO68251.1  [L=300]
Description: hypothetical protein BN946_scf184842.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-16   58.7   0.4    4.8e-15   55.8   0.4    2.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.4   2.7e-19   4.8e-15       2     158 ..      64     247 ..      63     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 2.7e-19
                 EEEE---BTT...................B--....TT----B-HHHHHHHHHHHHHHTTS---EE......EE-SSHHHHHHHHHHHHCTT..--EEE CS
  His_Phos_1   2 yLvRHGetew...................naegrlqgrtdvpLteeGreqAealaerlagepidai......ysSplkRarqTaeliaealg..lpvel 73 
                 ++vRHG+  +                     +g++    d++Lt  G++qA+a+ +  ++e+ + +      y+Sp++Ra +T + i  + g   + + 
  CDO68251.1  64 FFVRHGQGYHnvaeakygtedwdehwsklTDDGKILWGPDPDLTSVGVAQAQAVRKLWEAERKHGLplperhYASPMRRALRTWHEIFVNDGllAEHKS 162
                 688888888877777888888888888888888899999999************999888766666677889**************9988886567777 PP

                 -GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHH CS
  His_Phos_1  74 degLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarl 158
                 +  + E+++    gl+t++      e+ + +++++   rp + Es ++v++R++a+++++ ++ ++  +++ +H g+i+ ++a++
  CDO68251.1 163 RVMILEVSYMIDTGLKTRDFPPPIYEFEDGFSEEDILWRPDERESKAHVQERAQAVMDRIFSSDKDSYICITAHSGIINGFIAAM 247
                 77788*******************************999999*************************************999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2280.52
//
Query:       CDO68252.1  [L=700]
Description: hypothetical protein BN946_scf184842.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5206.99
//
Query:       CDO68253.1  [L=252]
Description: hypothetical protein BN946_scf184842.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.052   13.3   0.0       0.12   12.1   0.0    1.4  1  DUF4448      Protein of unknown function (DUF4448)
        6.6    7.5  13.7        0.4   11.4   3.0    3.0  3  CtnDOT_TraJ  Homologues of TraJ from Bacteroides conjugative 


Domain annotation for each model (and alignments):
>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05      0.12      22      51 ..      33      62 ..      26      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
     DUF4448 22 gssePFCtPkegselkvgktYyiTWdprfF 51
                + + P+  P+ ++ ++vg+t  +TWd    
  CDO68253.1 33 DVQPPITYPTAQTIWRVGETQVVTWDVAAL 62
                56678999******************9877 PP

>> CtnDOT_TraJ  Homologues of TraJ from Bacteroides conjugative transposon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.0   4.4e-05       0.4      11      56 ..     109     155 ..     106     187 .. 0.86
   2 ?   -0.5   2.4      0.23   2.1e+03      37      61 ..     189     213 ..     174     221 .. 0.69
   3 ?    0.0   2.1      0.15   1.4e+03      23      56 ..     201     235 ..     199     237 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
  CtnDOT_TraJ  11 tVPtvAnyivhAgGG.gallqkvnslassststalsaakagggmaad 56 
                  +VPt  nyiv   G  g + q  + + ++sts+ +sa+++++  + +
   CDO68253.1 109 SVPTADNYIVCLFGSsGDISQMFTIISANSTSSSASASASAAPSTSA 155
                  79************989999999999999988888888776655444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.23
  CtnDOT_TraJ  37 ssststalsaakagggmaadalgna 61 
                  + s++++ s++  gg+ aa+  + a
   CDO68253.1 189 AASSQSVFSGTLGGGSNAAASNATA 213
                  5677788887777777666655544 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.15
  CtnDOT_TraJ  23 gGG.gallqkvnslassststalsaakagggmaad 56 
                  gGG +a   + +     + s+++ + +a++g++a 
   CDO68253.1 201 GGGsNAAASNATAASDAAPSQTAFTNSAISGAVAH 235
                  67767777777777777766666667777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.51
# Mc/sec: 1479.24
//
Query:       CDO68254.1  [L=235]
Description: hypothetical protein BN946_scf184842.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00025   21.7   0.0    0.00057   20.6   0.0    1.6  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.2e-08   0.00057       2      93 .]      39     130 ..      38     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.2e-08
  GPI-anchored   2 sPssgevvtagkpvtitWkdsg.....tdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                    P+++  +t g++ t++W ++g     t +    ++L +gs  +  + +++a+g + sdg + +  p +l+++  Y + +  ++++    +S++F +
    CDO68254.1  39 LPTAQNAWTLGTVETVKWLTDGynvngTGSIILGISLPNGSV-DFWQDQPLAEGFPLSDGIVNVRCPLNLPTTRRYVIALLPDESN----QSPPFMV 130
                   59******************9986644444555678889999.99999*********************************66664....8999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1639.60
//
Query:       CDO68255.1  [L=523]
Description: hypothetical protein BN946_scf184842.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3844.17
//
Query:       CDO68256.1  [L=266]
Description: hypothetical protein BN946_scf184842.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-11   42.2   0.0    1.6e-10   41.1   0.0    1.6  1  GST_C     Glutathione S-transferase, C-terminal domain
    1.1e-10   41.7   0.0    4.5e-10   39.7   0.0    2.0  1  GST_N     Glutathione S-transferase, N-terminal domain
    4.6e-10   39.8   0.0    1.2e-09   38.5   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.6e-08   34.1   0.0      5e-08   33.1   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    1.9e-07   31.0   0.1    4.8e-07   29.7   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    2.9e-07   30.6   0.0    5.2e-07   29.8   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   5.3e-14   1.6e-10      28      93 .]     190     257 ..     187     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 5.3e-14
                 HHHHHHHHHHHHHHHHTSSSSST...TSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  28 lekvaevlsaleeelkkqdylvG...dkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 le++++ + +l+ +l+++ +l+G    k+++ADi+++p++n +   g++ + +++pn+kaw+er+++rp
  CDO68256.1 190 LEETKRLYGVLNVRLAGREWLAGpgqGKYSIADINAFPWVNAYSFAGIETL-DEWPNVKAWIERLSERP 257
                 58999*****************977789***********************.***************99 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.5e-13   4.5e-10       5      76 .]      57     148 ..      53     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.5e-13
                 EESSSTSHTHHHHHHHHH....HTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.................TEEEESHHHHHHHHHH CS
       GST_N   5 lysirgsprahrirllla....akgveyevvpldfeageekspellklnplgkvPaLedn.................gkkltESraIleYiar 76 
                 ly++ + p+  ++ ++l+      g+ y v ++df+++e+k+p++l lnp+g++P+L+d+                 g+ ++ES aIl Y+a+
  CDO68256.1  57 LYTAGT-PNGRKASIYLEelkaQYGLAYDVHRVDFKTAEQKRPWYLALNPNGRIPTLVDRnrpsrtlptaggaaqekGFAVFESAAILLYLAQ 148
                 666666.78888888888333344666788*************************************************************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   3.9e-13   1.2e-09       3      73 ..      58     152 ..      56     155 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3.9e-13
                 S-TTSHHHHHHHHHHHHHT--....EEEE---...TTTTHHHHHHH-TT--SSEEETTS-.................EEESHHHHHHHHHHHH-G CS
     GST_N_3   3 gfpaSpyarrvrlaLnekglp....vevvevt...pgehdeellaknplgkvPvLeddge.................altdSlaIidyLeelypg 73 
                 ++ + p+ r++ ++L+e++ +    + v+ v+    +++++++la np+g++P+L+d ++                 a+++S+aI+ yL + y+ 
  CDO68256.1  58 YTAGTPNGRKASIYLEELKAQyglaYDVHRVDfktAEQKRPWYLALNPNGRIPTLVDRNRpsrtlptaggaaqekgfAVFESAAILLYLAQHYDT 152
                 56677************9875333377888855546678****************8776667788888888999999***************985 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.7e-11     5e-08       3      68 ..      63     147 ..      62     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.7e-11
                 HHHHHHHHHHHHCT--EEEEE..E.H...-TTSHHHHHHHHCTTTSSSEEE-................CTTEEEESHHHHHHHHH CS
     GST_N_2   3 PwahRvlialalkglediisv..v.vlepkgfekseefprlnprgtVPvLwd................kdgqvineSseIlryle 68 
                 P  +++ i+l++++ ++ +      v+    ++k +++++lnp+g +P+L+d                ++g  + eS++Il yl+
  CDO68256.1  63 PNGRKASIYLEELKAQYGLAYdvHrVDFKTAEQKRPWYLALNPNGRIPTLVDrnrpsrtlptaggaaqEKGFAVFESAAILLYLA 147
                 56678889999988877743322345677888999*****************99999999988887766777***********97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-10   4.8e-07       9      69 .]     191     252 ..     183     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.6e-10
                 HHCCHCHHHCTTT---SS.CTTC...S--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLadspflfGd...qptlaDialapflvrlraagpgfdireaypnlraWler 69 
                 e+ ++   +l+ +La++ +l+G    + ++aDi+++p++    +ag  ++  +++pn++aW+er
  CDO68256.1 191 EETKRLYGVLNVRLAGREWLAGPgqgKYSIADINAFPWVNAYSFAG--IETLDEWPNVKAWIER 252
                 677788899*******99999999**********************..8899**********98 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.7e-10   5.2e-07      27      94 ..     191     261 ..     168     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.7e-10
                 HHHHCHHHHHHHHHHCHGTSSSSTT...S--HHHHHHHHHHHHHHHH..TCCCC-HHHHHHHHHHHTSHHHHH CS
     GST_C_3  27 erlpkflkyfekvlkkkgggylvgd...klTyADlalfqvldgleea..ealkkfpklkalyervearpkika 94 
                 e+ ++ +++++  l+  g ++l+g    k ++AD+  f +++++++a  e+l+++p++ka++er+++rp++ka
  CDO68256.1 191 EETKRLYGVLNVRLA--GREWLAGPgqgKYSIADINAFPWVNAYSFAgiETLDEWPNVKAWIERLSERPAVKA 261
                 556777888888888..999***74445*******************87666*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1969.05
//
Query:       CDO68257.1  [L=80]
Description: hypothetical protein BN946_scf184842.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 604.53
//
Query:       CDO68258.1  [L=181]
Description: hypothetical protein BN946_scf184842.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-25   88.4   9.0    2.7e-24   86.2   9.0    1.8  1  MRP-L20   Mitochondrial ribosomal protein subunit L20
     0.0013   19.3   0.1     0.0013   19.3   0.1    2.4  3  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   9.0     3e-28   2.7e-24       6     164 .]      31     181 .]      26     181 .] 0.83

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 3e-28
     MRP-L20   6 skssynrtksrlnlkpeesfgliynPpssapsvsh...tPtkFLPksdprrellaakeskassksselPpvlkkksekekkyhltkedieeirrLraeD 101
                 ++ ++n +++  +l++++ + +i++Pp++aps+ +    P + L k+ p             + +  lPp ++k +   +k  l+ e+i++ir+Lr++D
  CDO68258.1  31 DPLRSNPHATYQELPDNNLT-FIHRPPPTAPSPLSyttNPSSPLLKEGPT------------PVAGALPPSVRKDKG--EKPRLSDEEIAKIRDLRRAD 114
                 56677888888888888665.************99887899999999988............336889999977666..7779**************** PP

     MRP-L20 102 PekwsrkkLakkFgcsklfvsmvt..eapkekk..keveaeleavkerWgekrriaredRkkRkelw 164
                 P+kw+r kLak+Fgc++ fv+ ++  + p+ ++  +e+e+e+++++++Wge++ +  + RkkRke w
  CDO68258.1 115 PVKWTRGKLAKEFGCTPWFVGKLItlKGPDRRRalAEREREHAEARAKWGERKSLQADIRKKRKEFW 181
                 ********************866534555544422578889*************************9 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         2   1.8e+04      24      34 ..      23      34 ..      17      35 .. 0.66
   2 !   19.3   0.1   1.4e-07    0.0013      20      55 ..      90     126 ..      76     130 .. 0.84
   3 ?    0.9   1.1     0.079   7.1e+02      23      49 ..     143     165 ..     135     179 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
      HTH_32 24 grpr.klsdevr 34
                 rp+ + +d +r
  CDO68258.1 23 ERPPyRAPDPLR 34
                478777777766 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.4e-07
      HTH_32  20 rprrgrprklsdevrariiallreep.rWsprqlaar 55 
                 r+ +g +++lsde+ a+i++l+r +p +W+  +la++
  CDO68258.1  90 RKDKGEKPRLSDEEIAKIRDLRRADPvKWTRGKLAKE 126
                 355587788*************8899*******9985 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.079
      HTH_32  23 rgrprklsdevrariiallreeprWsp 49 
                 + r+r l +++r++  a++    +W+ 
  CDO68258.1 143 PDRRRALAEREREHAEARA----KWGE 165
                 3466678888888888877....4533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1267.98
//
Query:       CDO68259.1  [L=566]
Description: hypothetical protein BN946_scf184842.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-26   91.0   7.6    4.9e-26   91.0   7.6    4.3  5  Sas10       Sas10 C-terminal domain
    2.1e-05   25.1   0.9    2.1e-05   25.1   0.9    2.5  2  Sas10_Utp3  Sas10/Utp3/C1D family
  ------ inclusion threshold ------
        1.2    7.5   4.4          2    6.8   4.4    1.2  1  FUSC        Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> Sas10  Sas10 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   4.1      0.66   3.9e+03      37      60 ..     109     132 ..     107     135 .. 0.84
   2 ?   -3.8   0.6         3   1.8e+04      22      31 ..     399     408 ..     395     416 .. 0.50
   3 ?   -1.7   1.4      0.68   4.1e+03      40      63 ..     435     457 ..     431     467 .. 0.52
   4 ?   -2.9   3.9       1.7     1e+04      25      39 ..     466     480 ..     459     491 .. 0.49
   5 !   91.0   7.6   8.2e-30   4.9e-26       2      74 .]     493     566 .]     492     566 .] 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.66
       Sas10  37 ekakkklksqvaevkkeegkYsGe 60 
                 e+a+k+ k+q+a++k ++gk +G 
  CDO68259.1 109 EAAQKEKKKQKAKAKGKKGKKGGD 132
                 579999999999999999888886 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3
       Sas10  22 kkenrnpRvk 31 
                 +k+++ +R+ 
  CDO68259.1 399 RKKEKEARIA 408
                 2334444443 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.68
       Sas10  40 kkklksqvaevkkeegkYsGektG 63 
                 +kk k++++e  +e+++ +Ge+ G
  CDO68259.1 435 EKKAKKRRREE-SESEDEGGEADG 457
                 44444444433.345555666666 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.7
       Sas10  25 nrnpRvkkrkkYeka 39 
                 ++  + kk++ Ye+a
  CDO68259.1 466 SKEKKEKKKQEYEAA 480
                 222333444444444 PP

  == domain 5  score: 91.0 bits;  conditional E-value: 8.2e-30
       Sas10   2 dgkRkityqIekNkGLtpkRkkenrnpRvkkrkkYekakkklksqvaevk..keegkYsGektGIksnvvkSvkL 74 
                 dg+R++t++I+kNkGLtpkR+k++rnpRvkkr+kYekakkk++sq+a ++   + ++Y+GektGI s++vkSv+L
  CDO68259.1 493 DGPRSLTRAILKNKGLTPKRSKSVRNPRVKKRQKYEKAKKKVASQKAIYRggVDANRYTGEKTGI-SQTVKSVRL 566
                 89************************************************988889*********.6699**997 PP

>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   1.0         3   1.8e+04      17      27 ..     117     128 ..     106     147 .. 0.44
   2 !   25.1   0.9   3.5e-09   2.1e-05      10      84 ..     258     327 ..     221     329 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
  Sas10_Utp3  17 pllskakaee.k 27 
                 + ++kak ++ k
  CDO68259.1 117 KQKAKAKGKKgK 128
                 222222222231 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 3.5e-09
  Sas10_Utp3  10 elqeslepllskakaeekkslsdeklsegisllslKnelllaYllnlllylllklsg......velkdhpvvkeLvrlRvy 84 
                 ++q+++++l +           +++    +s+  l++++ll+Y+++l++yl l++s         l++hp+  +L++l++ 
  CDO68259.1 258 KAQAKIAKLEA-----------EDPAALSLSMMHLHYQALLTYATTLAFYLHLRASEkyiqrpELLRSHPILPRLLQLKQS 327
                 34444444444...........2344456799******************99998888*999977799**********985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.4   0.00034         2     241     351 ..     180     290 ..     174     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00034
        FUSC 241 llarlraeeaaavpe....laallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaarrae 335
                 + +rl+++ ++a++e    l+++ + l + ++    e  +  +++l+++ ++l r+le+ ++ a +l+   +++ + l+ ++a++++lea+++a  +  
  CDO68259.1 180 EAKRLQTKAREAMAEddfgLDDVAEGLPE-TDGIVDEPAQPTVQQLPQDKQSLLRHLEKTNPEALALANDWDDVAHGLMKAQAKIAKLEAEDPA--ALS 275
                 55666666666666656788888888888.555789999****************************************************885..333 PP

        FUSC 336 rlarhrdhlaallngl 351
                  l++ + h++all  +
  CDO68259.1 276 -LSMMHLHYQALLTYA 290
                 .334334444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1671  (0.093201); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.51
# Mc/sec: 3334.60
//
Query:       CDO68260.1  [L=694]
Description: hypothetical protein BN946_scf184842.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-06   27.4   5.6    4.9e-06   26.6   5.6    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0027   16.8   0.0      0.026   13.5   0.0    2.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   5.6   5.4e-10   4.9e-06       1      37 [.      45      81 ..      45      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.4e-10
                SS-HHHHHCT---ST..SSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCda..kkPaCsnCkklnleCtfysess 37
                +aCd Cr +KvKC++  ++   ++C ++n++Ct y +++
  CDO68260.1 45 TACDACRARKVKCNQlpGQD--KHCLSKNYPCTHYIQQQ 81
                69*************77666..9**********887665 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.9e-06     0.026       2     181 ..     209     414 ..     208     423 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-06
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt...................................ssenssksayaspllllailalGalfsesetkesnsslt 63 
                   ++ff+ +h  +p+l+  +f +                                     +s++  + +  +p+l+++++a Ga fse +    +  + 
    CDO68260.1 209 EVFFQIVHTRLPLLNPVQFRSRLhtsltltgsqndgsspntpiaqqqrtrdsasplggQSSQQQPEKPLHPALVATVIAWGAKFSEHPLFVADRRHN 305
                   689999999999999977766666678888999999999999999999999999999999999999999999**************99988866666 PP

  Fungal_trans  64 sesqefiafpl..raeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwa 158
                   + ++ f+   l  ra+ l  +  +   ++  ++   ll+e     +++ + h  ++g a+rl  +l  + ++  ++      +++e + ++   ww+
    CDO68260.1 306 NGQSAFA-KVLinRARELAEDMKVHRIPNADHVVISLLIE----PLQS-RFHGFWLGSAIRLLLDLQINHKSVMSNI-----HDPEARGTMIFAWWM 391
                   6552222.11122444444444444444455555444444....3332.46778***************99999994.....88888********** PP

  Fungal_trans 159 aFylDktialklGrppllddsqi 181
                   a   D + +++++r p+l+ + +
    CDO68260.1 392 ACLADAYRSVYYRRKPMLHFQRL 414
                   ****************8776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4508.05
//
Query:       CDO68261.1  [L=149]
Description: hypothetical protein BN946_scf184842.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-39  132.5   0.4    9.9e-39  132.3   0.4    1.0  1  Tom22     Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> Tom22  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.4   5.5e-43   9.9e-39       1     138 []       1     129 [.       1     129 [. 0.87

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 5.5e-43
       Tom22   1 mVkltevedeefqeeqegeeeelaeededeadetdsdseis.sdedddfdvedEtlldRivALkDiippttRksissavstttslvkstlsfsGkllWv 98 
                 mVk++ ve++e++++++ +     ++++     + + s++s s+  +++d  +E++++RivAL Di+ppttR++is+++  t+s++k t ++ G+l+W+
  CDO68261.1   1 MVKVEIVEEKEQHDSRS-PY---SSASS-----SRTSSSVSlSSVGSELD-GEESFYERIVALADIVPPTTRQRISDRLGRTASFIKGTGKVVGNLVWI 89 
                 9***9999987754443.33...22222.....34556666567899999.79********************************************** PP

       Tom22  99 vttSaLLlGvPlaLaieeEqqlvemEkemklqksanella 138
                 vttSaLL+G+PlaL +e+E+++v++Ekem +q++++++la
  CDO68261.1  90 VTTSALLVGLPLALVLEDEAKIVQQEKEMLAQQQGAQMLA 129
                 *************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1065.47
//
Query:       CDO68262.1  [L=345]
Description: hypothetical protein BN946_scf184842.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-13   49.0   0.0    8.9e-13   48.5   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    1.2e-12   47.9   0.0    1.6e-12   47.5   0.0    1.2  1  NmrA             NmrA-like family
    9.5e-11   41.6   0.4    1.5e-09   37.7   0.4    2.4  1  Epimerase        NAD dependent epimerase/dehydratase family
    6.1e-10   38.6   0.1    4.3e-09   35.8   0.1    1.9  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      1e-09   37.9   0.0    2.6e-08   33.3   0.0    2.2  1  RmlD_sub_bind    RmlD substrate binding domain
    4.1e-06   26.2   0.1      0.044   13.0   0.0    3.1  3  NAD_binding_4    Male sterility protein
     0.0018   17.8   0.1      0.019   14.4   0.1    2.2  2  adh_short        short chain dehydrogenase
     0.0054   16.2   0.0     0.0094   15.4   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.037   13.6   0.0    1.5  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      0.086   11.9   0.1        0.2   10.7   0.0    1.6  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
        0.1   12.7   0.0        0.2   11.8   0.0    1.4  1  DapB_N           Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   5.4e-16   8.9e-13       1     146 [.      54     199 ..      54     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 5.4e-16
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH.........HHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg.........aknivd 83 
                     G tG  Gr++v++l+++g ++v +  R++++  +l+   +  ++  +e d+  +++++e l++ d+V+  +g++ ++++          a  i++
      CDO68262.1  54 GCTGFMGRYVVAKLAKAG-TQVIVPYRDEDEKRHLKvtgDLGQIVNMEWDLRRPDQIEECLRHSDIVYNLVGREYETKNFsyedvhvkgAGMIAN 147
                     789**************5.*********887776663335578888899**********************9999855555666677889999** PP

                     HHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CE CS
  NAD_binding_10  84 aakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggL 146
                     +a +agv Rfv vs +++ +++p+           a ++ k+a ee +++   + Tivrp+ +
      CDO68262.1 148 VAAQAGVDRFVHVSHLNAAHDSPS-----------AFYRSKAAGEEAVKEAFPTATIVRPSLM 199
                     ******************965444...........56899********************876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0     1e-15   1.6e-12       2     198 ..      51     246 ..      50     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1e-15
                 EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE---GG.........S-HHHHHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv..kgdlddkeslvealkgvdvvfsvtgfy.........skeiedgkklvdAa 89 
                 +v+G TG +G++vv+ l+kag +v +  Rd+++++  ++     ++v  + dl   + ++e l+ +d v+  +g           + +++    ++++a
  CDO68262.1  51 TVFGCTGFMGRYVVAKLAKAGTQVIVPYRDEDEKRHLKVTGDLGQIVnmEWDLRRPDQIEECLRHSDIVYNLVGREyetknfsyeDVHVKGAGMIANVA 149
                 7******************************88888887766666664788999*****************9997789999999999999999****** PP

                 HHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHH CS
        NmrA  90 keaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGa 188
                 ++aGv +f+  s  ++   s        ++ sKa  ee+v+++   +t+v++ + +++  +ll +      a  +  +  l + ++k +++ ++ D+++
  CDO68262.1 150 AQAGVDRFVHVSHLNAAHDS-----PSAFYRSKAAGEEAVKEAFPTATIVRPSLMYGYEDRLLNN-----VAFWA-IWWKLNHMQTKVRPV-HVMDVAQ 236
                 **********9999998666.....4579**************999******9999998887666.....22222.222234555566666.7777777 PP

                 HHHHHHHHHH CS
        NmrA 189 fvikilkdpr 198
                 + +++++ p+
  CDO68262.1 237 ALANLIQIPS 246
                 7777776555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.4   9.2e-13   1.5e-09       2     115 ..      51     162 ..      50     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 9.2e-13
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtl 96 
                  V G tGf+G+++v +l+++g +vi+  r+++++++ +          +e dl+ ++++e+ ++  + d+v++l +      ++++     + +++g+ 
  CDO68262.1  51 TVFGCTGFMGRYVVAKLAKAGTQVIVPYRDEDEKRHLKVTGDlgqiVNMEWDLRRPDQIEECLR--HSDIVYNLVGREYETKNFSY----EDVHVKGAG 143
                 699***************************7766665544448*888899**************..9*******665555555555....557999*** PP

                 HHHHHHHHHTCTEEEEEEE CS
   Epimerase  97 nlleaarkagvkrllflsS 115
                  ++++a +agv+r++++s 
  CDO68262.1 144 MIANVAAQAGVDRFVHVSH 162
                 ****************985 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.6e-12   4.3e-09       2     122 ..      52     168 ..      51     182 .. 0.85
   2 ?    1.1   0.0     0.099   1.6e+02     145     192 ..     172     210 ..     166     237 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.6e-12
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnvl 100
                 v G +GF+Gr++v +L +++    v   D +e+ +l + +  ++ +  +e D++  d++ee l+ +d+v  l +    ++   + ++ +v vkG   + 
  CDO68262.1  52 VFGCTGFMGRYVVAKLAKAGTQVIVPYRDEDEKRHL-KVTGDLGQIVNMEWDLRRPDQIEECLRHSDIVYNLVGREYETK---NFSYEDVHVKGAGMIA 146
                 89******************8777777787777776.566677777799********************99955544444...44588*********** PP

   3Beta_HSD 101 eacvkagvrvlvYtSsaevvgp 122
                 + + +agv ++v++S ++++ +
  CDO68262.1 147 NVAAQAGVDRFVHVSHLNAAHD 168
                 ****************999876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.099
   3Beta_HSD 145 aypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpl 192
                 a+ +sKa  E++v++a               +Rp+ +yG  d+ll ++
  CDO68262.1 172 AFYRSKAAGEEAVKEAFP---------TATIVRPSLMYGYEDRLLNNV 210
                 667788888888888766.........234579999999988887765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.6e-11   2.6e-08       5     157 ..      52     205 ..      49     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.6e-11
                    EESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   5 vtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    v+G +G +G+ ++++la++g++v+ + r+                   e+dl+++++++e+l++   d+v+n+       + E+++ + + v +++
     CDO68262.1  52 VFGCTGFMGRYVVAKLAKAGTQVIVPYRDedekrhlkvtgdlgqivnmEWDLRRPDQIEECLRH--SDIVYNLVG----REYETKNFSYEDVHVKG 141
                    89************************99899********************************9..899*99865....56799999999****** PP

                    HHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS CS
  RmlD_sub_bind  82 vealAeaaaavga.lLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvygekgk 157
                    ++ +A++aa++g+  ++hvS              + ++ sP  +Y r+K+aGE+av++a ++a+ivR s +yg +++
     CDO68262.1 142 AGMIANVAAQAGVdRFVHVSH------------LNAAHDSPSAFY-RSKAAGEEAVKEAFPTATIVRPSLMYGYEDR 205
                    ************9569***94............456678899999.9**************************8654 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.7e-05     0.044       3      36 ..      54      85 ..      52     101 .. 0.90
   2 ?   -0.1   0.0      0.26   4.3e+02     107     135 ..     134     161 ..     103     167 .. 0.74
   3 !    9.0   0.0   0.00044      0.72     168     208 ..     165     201 ..     159     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                   -TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHH CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpevkiyllvRaksges 36
                   G TGF+G+++++kL +  +  ++++  R ++++ 
     CDO68262.1 54 GCTGFMGRYVVAKLAKAGT--QVIVPYRDEDEKR 85
                   99**************998..8*****9999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.26
                    EHHHHHHHHHHHHHHHTSSS--.-EEEEE CS
  NAD_binding_4 107 llrvNveGtrevlelakklkklkvllhvS 135
                      +v v+G+  + + a++      ++hvS
     CDO68262.1 134 YEDVHVKGAGMIANVAAQAGVD-RFVHVS 161
                    56889999*********98887.9****9 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00044
                    ETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 168 klkglpntYeqsKalaEklvrearrrsglpvvivRpsiitg 208
                      ++ p ++ +sKa++E+ v+ea+      ++ivRps  +g
     CDO68262.1 165 AAHDSPSAFYRSKAAGEEAVKEAFP----TATIVRPSLMYG 201
                    56677888999*************3....379*****9887 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.2e-05     0.019       2      70 ..      49     115 ..      48     165 .. 0.82
   2 ?    1.4   0.1      0.11   1.8e+02     126     152 ..     140     166 ..     118     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvek 70 
                 ++ v G+++ +Gr ++ +lak+G +v+v  r e++  + +k  +++  +++ ++ D++  +++e+ +++
  CDO68262.1  49 IATVFGCTGFMGRYVVAKLAKAGTQVIVPYRDEDEK-RHLKVTGDL-GQIVNMEWDLRRPDQIEECLRH 115
                 68899***99******************55554433.344444544.579*************998876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
                 CTTEEEEEEEEGGGTSB-TTBHHHHHH CS
   adh_short 126 qssGrIvnvsSvagkvpvagvaaYsAs 152
                 + +G I nv+ +ag  ++ +v+   A+
  CDO68262.1 140 KGAGMIANVAAQAGVDRFVHVSHLNAA 166
                 678999999999999999998876665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.8e-06    0.0094       2      86 ..      52     126 ..      51     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S-- CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqs 86 
                    + G +Gf G y++ +L + g +v++  r++++      +hl+        +++  ++ Dl+  +++e+ l++   d vynL +  
     CDO68262.1  52 VFGCTGFMGRYVVAKLAKAGTQVIVPYRDEDEK-----RHLKVTG---DLGQIVNMEWDLRRPDQIEECLRHS--DIVYNLVGRE 126
                    78*********************8887776663.....3444322...2357788999*************99..8899996655 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-05     0.037       6      61 ..      59     114 ..      54     121 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
                   HHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHH CS
  adh_short_C2   6 IGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealve 61 
                   +Gr ++ +la++G +v++ +++e++ kr  +++ +lg+ v +e D ++++q+e++ +
    CDO68262.1  59 MGRYVVAKLAKAGTQVIVPYRDEDE-KRHLKVTGDLGQIVnMEWDLRRPDQIEECLR 114
                   6899999*****************9.7777888999*9999************9876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013       0.2       3     147 ..      52     182 ..      50     195 .. 0.76
   2 ?   -3.1   0.0         2   3.3e+03     232     247 ..     227     242 ..     223     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                      EETTTSHHHHHHHHHHHHHB-SEEEEE.ES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHHH CS
  Polysacc_synt_2   3 vtGagGsiGselvrqilkkkpkkiill.erdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlvee 95 
                      v G +G +G+ +v +++k   + i+ + ++dE++  +++ +l +          iv++  d+r  +++e++l+  + d+v++          e+
       CDO68262.1  52 VFGCTGFMGRYVVAKLAKAGTQVIVPYrDEDEKRHLKVTGDLGQ----------IVNMEWDLRRPDQIEECLR--HSDIVYNLVGRE----YET 129
                      7799**********999998776665425556666666666632..........2333489************..999**9997754....688 PP

                      SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGS.S--SHHHHHHHHHHH CS
  Polysacc_synt_2  96 npleaiktNvlgtenvieaaieagvkkvvliStDKAv.nPtnvmGatKrlaek 147
                      + ++  +  v g+  ++++a +agv+++v +S   A+ ++ +++  +K++ e 
       CDO68262.1 130 KNFSYEDVHVKGAGMIANVAAQAGVDRFVHVSHLNAAhDSPSAFYRSKAAGEE 182
                      888888999***********************866551445555566666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2
                      -EEEHHHHHHHH.... CS
  Polysacc_synt_2 232 epvkivdlakaliels 247
                       pv+++d+a+al +l+
       CDO68262.1 227 RPVHVMDVAQALANLI 242
                      6888888888888776 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012       0.2       4      71 ..      51     119 ..      49     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                 EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTC..STTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEE CS
      DapB_N   4 avvGasGrmGkevvkaveeaedlelvaavdrke..selegkdagellglgklgvavtddleevlekadvl 71 
                 +v+G++G mG+ vv  + +a    +v   d++e  +  +  d+g+++++ + ++   d++ee+l+++d++
  CDO68262.1  51 TVFGCTGFMGRYVVAKLAKAGTQVIVPYRDEDEkrHLKVTGDLGQIVNM-EWDLRRPDQIEECLRHSDIV 119
                 599**************99777777777776662233344566666665.55556669999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2490.19
//
Query:       CDO68263.1  [L=104]
Description: hypothetical protein BN946_scf184842.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.3  12.1    1.1e-21   77.3  12.1    1.9  2  DUF2462   Protein of unknown function (DUF2462)


Domain annotation for each model (and alignments):
>> DUF2462  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3  12.1   6.3e-26   1.1e-21       1      74 [.       1      77 [.       1      79 [. 0.95
   2 ?   -0.3   1.1       0.1   1.8e+03      54      65 ..      88      99 ..      81     104 .] 0.44

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 6.3e-26
     DUF2462  1 MaQGklKkkkkkk...sakakkkaknpkkgarviaPKkaklvkqqklkkklsaglnkktEkelasrAgsskLellkg 74
                MaQG++K  +k+k    ++a k+a+ pkkg+r+iaPKk++lvkq+ l+k+lsa++n ++E+++a+ A+s+kL+++k+
  CDO68263.1  1 MAQGQIKGLQKQKssgGRHAAKAAAAPKKGKRYIAPKKTALVKQAALHKELSAKINRSIERQVAAAASSGKLTIMKN 77
                ****9998887667899999999999*************************************************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.1
     DUF2462 54 kktEkelasrAg 65
                k  Ek+  ++A+
  CDO68263.1 88 KDKEKTAKAKAS 99
                333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 735.59
//
Query:       CDO68264.1  [L=593]
Description: hypothetical protein BN946_scf184842.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-13   48.8   0.0    1.3e-12   47.5   0.0    1.7  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
    0.00053   19.7   0.0     0.0011   18.6   0.0    1.5  1  HTH_23       Homeodomain-like domain
    0.00063   19.4   0.0     0.0012   18.6   0.0    1.4  1  HTH_Tnp_4    Helix-turn-helix of DDE superfamily endonuclease
     0.0016   18.2   0.0      0.074   12.9   0.0    2.7  3  HTH_IclR     IclR helix-turn-helix domain
     0.0028   17.2   0.0      0.005   16.4   0.0    1.3  1  CENP-B_N     CENP-B N-terminal DNA-binding domain
     0.0041   17.1   0.0     0.0077   16.2   0.0    1.4  1  HTH_Crp_2    Crp-like helix-turn-helix domain
     0.0043   16.9   0.0      0.011   15.7   0.0    1.6  1  MarR         MarR family
     0.0055   16.6   0.0      0.012   15.4   0.0    1.5  1  MarR_2       MarR family
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.031   14.2   0.0    1.5  1  HTH_37       Helix-turn-helix domain
       0.02   15.2   0.0      0.057   13.8   0.0    1.7  1  HTH_31       Helix-turn-helix domain
      0.036   13.8   0.1      0.067   13.0   0.1    1.5  1  HTH_38       Helix-turn-helix domain
      0.045   13.3   0.0       0.11   12.1   0.0    1.6  1  HTH_24       Winged helix-turn-helix DNA-binding
      0.063   13.1   0.1       0.15   11.9   0.1    1.6  1  LacI         Bacterial regulatory proteins, lacI family
       0.15   12.0   0.0       0.29   11.1   0.0    1.4  1  HTH_36       Helix-turn-helix domain
       0.18   11.4   0.0       0.34   10.4   0.0    1.4  1  Sigma70_r4   Sigma-70, region 4


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   1.1e-15   1.3e-12       1      64 [.     314     376 ..     314     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.1e-15
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS--X CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhglkr 64 
                  +pelE  L++W++   ++g  ++++l+r+ A+e+  ++++ + ++fkaS+gWl++Fk Rhg+ r
   CDO68264.1 314 FPELEYRLAQWVKTVSKSGTVLSDALLRQRAREI-GDSQGYTADKFKASSGWLENFKHRHGIRR 376
                  69********************************.56688899*******************87 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.5e-07    0.0011       5      39 ..     255     290 ..     252     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.5e-07
      HTH_23   5 reRlrillllae.GlsvreIAreLgvsrrTvyrwlk 39 
                 ++R+  + +    G  +++IA+++gv r+Tv+++lk
  CDO68264.1 255 DRRAICIFAREHpGVKQEDIAAHFGVERSTVSKILK 290
                 5788888888889*********************98 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.7e-07    0.0012       2      41 ..     250     290 ..     249     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.7e-07
   HTH_Tnp_4   2 kL.sledqllltLvyLRlnltyqdLayrFgvsestvsrifh 41 
                 +L ++  +++++  + + ++ ++d+a+ Fgv +stvs+i +
  CDO68264.1 250 RLyNTDRRAICIFAREHPGVKQEDIAAHFGVERSTVSKILK 290
                 6777788889999999999*******************987 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.3   8.7e+03      22      34 ..     157     169 ..     153     169 .. 0.83
   2 !   12.9   0.0   6.2e-05     0.074      11      40 ..     261     290 ..     259     291 .. 0.93
   3 ?    2.2   0.0      0.13   1.6e+02      14      33 ..     438     457 ..     435     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.3
                 HHHHHHHTS-HHH CS
    HTH_IclR  22 selArrtglpkSt 34 
                  +l++++ lp St
  CDO68264.1 157 MQLSEQSRLPFST 169
                 5899999999887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.2e-05
                 T-CTTBSS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  11 alaeapqeltlselArrtglpkStvhRlLq 40 
                 ++a++ ++++  ++A+++g+ +Stv+ +L+
  CDO68264.1 261 IFAREHPGVKQEDIAAHFGVERSTVSKILK 290
                 599***********************9985 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.13
                 TTBSS-BHHHHHHHHTS-HH CS
    HTH_IclR  14 eapqeltlselArrtglpkS 33 
                 +a++++  s lA++t +p +
  CDO68264.1 438 SATPAMHPSALAAQTPWPQP 457
                 57899**********99976 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.2e-06     0.005      22      48 ..     268     294 ..     257     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-06
                 TT-HHHHHHHHT--CCHHHHHHHCHHH CS
    CENP-B_N  22 geSkaelarrfnvpestlsdilknKkk 48 
                 g   +++a  f+v +st+s+ilk+K+ 
  CDO68264.1 268 GVKQEDIAAHFGVERSTVSKILKHKAR 294
                 556789*******************86 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.4e-06    0.0077      21      43 ..     268     290 ..     249     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.4e-06
                 EHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2  21 pltqeelAsmlGltretvsrils 43 
                  + qe++A++ G+ r+tvs+il+
  CDO68264.1 268 GVKQEDIAAHFGVERSTVSKILK 290
                 489*******************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     9e-06     0.011      13      39 ..     264     290 ..     262     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9e-06
                 HHSTTEEHHHHHHHHTS-HHHHHHHHH CS
        MarR  13 yeqgplsvseLakklgvskstvtrvld 39 
                 +e+++ ++ ++a ++gv++stv+++l+
  CDO68264.1 264 REHPGVKQEDIAAHFGVERSTVSKILK 290
                 69***********************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05     0.012      15      43 ..     264     290 ..     254     291 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
                 HCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2  15 grrpgrdltvgelarrlglsksavsrilk 43 
                 + +pg  + + ++a+++g+++s+vs+ilk
  CDO68264.1 264 REHPG--VKQEDIAAHFGVERSTVSKILK 290
                 56888..9*******************98 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-05     0.031      26      61 ..     263     298 ..     235     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
                 HHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--H CS
      HTH_37  26 liekrelsqseaaqllgiaqPkvsrllrgklsrfsl 61 
                  +e+ + +q+++a+++g+ ++ vs++l+ k + +s+
  CDO68264.1 263 AREHPGVKQEDIAAHFGVERSTVSKILKHKARWLSV 298
                 579999**********************99877765 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-05     0.057       9      36 ..     263     290 ..     262     305 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
      HTH_31   9 lReraGLsqeevAerlgvsestlsrlEq 36 
                 +Re  G++qe+ A++ gv +st+s++  
  CDO68264.1 263 AREHPGVKQEDIAAHFGVERSTVSKILK 290
                 59***********************976 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.6e-05     0.067       3      43 ..     249     291 ..     247     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-05
      HTH_38   3 khLsleeReeIerllaeGlslr..eIArrLgrspsTIsRElkR 43 
                 ++L  ++R+ I +   e  +++  +IA + g+ +sT+s+ lk+
  CDO68264.1 249 RRLYNTDRRAICIFAREHPGVKqeDIAAHFGVERSTVSKILKH 291
                 667777777777776555444444*****************98 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.1e-05      0.11       4      39 ..     254     290 ..     253     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.1e-05
      HTH_24   4 tdrkILelLqk.nprisqreLAerlglSpstvnrrlk 39 
                 tdr+ +++  + +p+  q ++A + g+ +stv++ lk
  CDO68264.1 254 TDRRAICIFAReHPGVKQEDIAAHFGVERSTVSKILK 290
                 788888777777*********************9998 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00012      0.15       4      34 ..     273     304 ..     271     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 HHHHHCTS-HHHHHHHCTTS.SSSTHHHHHHH CS
        LacI   4 DVArlAGVSkaTVSrvLnnk.erVseetrerV 34 
                 D+A   GV  +TVS++L++k +  s +  e V
  CDO68264.1 273 DIAAHFGVERSTVSKILKHKaRWLSVAVDEEV 304
                 9******************9766676666666 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.29      27      47 ..     270     290 ..     250     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
      HTH_36  27 sqetlakrlglsknTvsraik 47 
                  qe++a+++g+ ++Tvs+++k
  CDO68264.1 270 KQEDIAAHFGVERSTVSKILK 290
                 59*****************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00029      0.34      18      42 ..     266     290 ..     254     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
                 TTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4  18 geglTleEIgerlgiSrerVrqiek 42 
                   g  +e+I++++g+ r++V+ i+k
  CDO68264.1 266 HPGVKQEDIAAHFGVERSTVSKILK 290
                 566779****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4069.79
//
Query:       CDO68265.1  [L=289]
Description: hypothetical protein BN946_scf184842.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-12   46.1   0.1    1.6e-07   30.8   0.1    2.8  2  CAF1      CAF1 family ribonuclease


Domain annotation for each model (and alignments):
>> CAF1  CAF1 family ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0     7e-06      0.13      55     125 ..       4      67 ..       1      74 [. 0.82
   2 !   30.8   0.1   8.8e-12   1.6e-07     203     319 .]      84     174 ..      72     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-06
                 HTTTB-EEEEEEEEEEEETTTTE..EEEEEEEEEB----SS---EEEEEHHHHHHHHHTT--HHHHHTT-B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1  55 aaesfsilqlGlscfsedkekkekeykvqpynfylfpkeedldrefsvspsslqFLakngfdfnkliseGi 125
                 ++   +i+q+G++++ ed +  +  + +  +nf  + +      e ++ p+s++ L+k g+d+++  + Gi
  CDO68265.1   4 NVDLLKIIQVGITLADEDGNFPQ-DVSTWQFNFKFSAS------EDMFAPESIDLLQKSGIDLQRHEEMGI 67 
                 566678*********88877764.56666777777765......899*****************9888887 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 8.8e-12
                 HHC--EEEESSTHHHHHHHHHHHT--.--SSHHHHHHHHHHH-SSEEEHHHHHTSTTTTTT-S--SHHHHHHHTTSTTS--.......--EEE-TTS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1 203 vksrkpiVgHNgllDllflyqtfyae.LPesleeFkaklselFPgiiDtKylakneelearleassLeelfeklkkenskskdassseekkesekkkaa 300
                 +   k+i +H g+ D+ ++++ + ++ LP + e+F   l+ +FP+i+D Ky++     ++++ +  L+++ + l    +                    
  CDO68265.1  84 SPDTKWISFHSGY-DFGYFVKLLTGQsLPMNEETFFDVLRTWFPTIYDIKYVM----RSCKVLKGGLQDVADDL----G-----------VM------- 155
                 4567889999886.*********8888**************************....35666777899998888....1...........11....... PP

                 -------HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        CAF1 301 seesaHeAGyDafmTGlvf 319
                   + +H+AG D+++T++ f
  CDO68265.1 156 RIGPSHQAGSDSLLTASTF 174
                 22347**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1949.48
//
Query:       CDO68266.1  [L=524]
Description: hypothetical protein BN946_scf184842.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-21   73.7   1.6    7.6e-10   38.5   0.3    2.4  2  SH3_9     Variant SH3 domain
    1.6e-18   66.1   0.2    2.5e-08   33.5   0.3    2.3  2  SH3_2     Variant SH3 domain
    5.4e-16   57.9   1.0    1.5e-07   30.9   0.0    2.7  2  SH3_1     SH3 domain
      4e-11   43.0   0.6      4e-11   43.0   0.6    2.0  2  FCH       Fes/CIP4, and EFC/F-BAR homology domain
     0.0075   16.5   0.1      0.015   15.6   0.1    1.5  1  SH3_3     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.8e-12   1.7e-08       1      49 []     388     438 ..     388     438 .. 0.93
   2 !   38.5   0.3   2.1e-13   7.6e-10       2      49 .]     468     522 ..     468     522 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.8e-12
       SH3_9   1 AlypyepreddeLsLqrGDvitvieese.dgWlegsl.tGrtGlvPanyve 49 
                 +l++++p+++ eL + ++ ++ v+ee++ +gW+ +   +G +GlvPa+yve
  CDO68266.1 388 VLFDFTPTSPFELAVTADSFVHVLEEDDgSGWVKVADeSGAKGLVPASYVE 438
                 89**********************77544******988************7 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 2.1e-13
       SH3_9   2 lypyepreddeLsLqrGDvitviee......sedgWlegsl.tGrtGlvPanyve 49 
                 ly y++  +de+ +++G  i++ +       + dgW+eg   +G+tG +P+nyve
  CDO68266.1 468 LYSYKASGPDEIDVEVGKLIRLTDGptggrnYADGWWEGVDeNGKTGIFPSNYVE 522
                 79********************84446776678******988************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   6.5e-11   2.3e-07       2      56 ..     386     439 ..     385     440 .. 0.93
   2 !   33.5   0.3   6.9e-12   2.5e-08       2      55 ..     465     522 ..     464     524 .] 0.90

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 6.5e-11
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsd.gwwegev.gGrvGlfPsslvee 56 
                 +r+++d++++++ eL  +++ +++vl   ++d++ gw +++   G +Gl+P s+ve 
  CDO68266.1 386 ARVLFDFTPTSPFELAVTADSFVHVL---EEDDGsGWVKVADeSGAKGLVPASYVEL 439
                 69************************...777778999998889***********85 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 6.9e-12
                 EEESS-B-SCGCCB--B-TTEEEEEE.....EEEECTTEEEEEE.CCCEEEEEGCGEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvls...lgskdsdgwwegev.gGrvGlfPsslve 55 
                 vr + +y+++ ++e+  ++G +i++++   +g+   dgwweg   +G+ G+fPs++ve
  CDO68266.1 465 VRGLYSYKASGPDEIDVEVGKLIRLTDgptGGRNYADGWWEGVDeNGKTGIFPSNYVE 522
                 6666789********************9988888888*****888************8 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.3e-11   1.5e-07       1      48 []     387     434 ..     387     434 .. 0.96
   2 !   24.5   0.8     4e-09   1.5e-05       3      48 .]     468     518 ..     466     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 4.3e-11
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 ++l+D++++++ EL  + +  ++vle++++ gW+k+ + + g +Gl+P+
  CDO68266.1 387 RVLFDFTPTSPFELAVTADSFVHVLEEDDGsGWVKVADES-GAKGLVPA 434
                 68*************************************8.69*****6 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 4e-09
                 SSSBEXSSTTBXEBSTTEEEEEEEECSS......SEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksed......gWwkgrlkgtgkeGliPs 48 
                 lY Y+a+ +dE++ + G  i + +   +      gWw+g + + gk+G++Ps
  CDO68266.1 468 LYSYKASGPDEIDVEVGKLIRLTDGPTGgrnyadGWWEGVDEN-GKTGIFPS 518
                 9**********************97666666668********9.6******8 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.6   1.1e-14     4e-11      15      76 ..       4      83 ..       2      84 .. 0.90
   2 ?   -2.8   0.8       2.3   8.2e+03      31      52 ..     112     134 ..     109     158 .. 0.58

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.1e-14
                HHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT-..........................HHHHHHHHHHHHHHHHHHHHHH CS
         FCH 15 lledlqeflkeRaeiEkeYakkLqkLakkylkrrkkks.....................eestlvtawtvlleeteklaqshl 76
                +l +++e+ k Ra++E+eYa kLq+Lakk+ +++   +                     ++stl +a+t+l++ + + +++h 
  CDO68266.1  4 SLVQVRELHKDRAALEREYATKLQALAKKAVEKK---AkkivalvlgneptkawdenaiARSTLDKAYTQLISAITDASNDHV 83
                56689***************************54...234689999999999***************************9996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                 HHHHHHHHHHCT----TT.-... CS
         FCH  31 keYakkLqkLakkylkrr.kkks 52 
                  +Y +kL +   +++  r k+k+
  CDO68266.1 112 IQYYQKLLADRDRVYADRlKSKQ 134
                 56777776665555555555554 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.1e-06     0.015      21      55 .]     404     438 ..     401     438 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
       SH3_3  21 yGekVevleetgggeWykvrtddgteGwvssgyls 55 
                 + + V vlee++g +W+kv + +g +G v ++y++
  CDO68266.1 404 ADSFVHVLEEDDGSGWVKVADESGAKGLVPASYVE 438
                 667799*************999999********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1983  (0.110603); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3681.52
//
Query:       CDO68267.1  [L=135]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-06   26.9   0.1    1.4e-05   25.3   0.1    1.9  1  DPBB_1    Lytic transglycolase
  ------ inclusion threshold ------
       0.04   13.8   0.0       0.06   13.2   0.0    1.3  1  Barwin    Barwin family


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   1.6e-09   1.4e-05       3      83 .]      35     125 ..      33     125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.6e-09
                 EEEEEE-CCC.-TTSS.B--TTS-EEE-SSS.......-TT-EEEETT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEEE CS
      DPBB_1   3 agsaslykdg.tacGe.cyevkcltaahktl.......plgtycrvls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVky 83 
                 +g+ ++++ g  acG+ + +   ++a +++           + ++  + gks   ++ D +p +  + iD+S+  f++l+  + Gv++V++
  CDO68267.1  35 TGRGTWFDVGlGACGKhNVNSDKIVAISSHIygnggncEQYMHITNTAnGKSAWGKVRDECPGCGANDIDMSPSLFQELGSLDEGVLKVSW 125
                 5677777666666665234444444444443666664322233344556999999*********************************986 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.7e-06      0.06      59     100 ..      71     115 ..      58     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.7e-06
      Barwin  59 scGkclrvtntatnaqvtvrivdqcsng...Gldldvalfnkldt 100
                  c + + +tnta++++   ++ d c       +d+ ++lf++l +
  CDO68267.1  71 NCEQYMHITNTANGKSAWGKVRDECPGCganDIDMSPSLFQELGS 115
                 69999*******************76552226888899**99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 969.21
//
Query:       CDO68268.1  [L=406]
Description: hypothetical protein BN946_scf184842.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-53  180.1   0.1    2.7e-52  177.7   0.0    2.0  2  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    2.1e-25   89.7   0.0    3.6e-25   88.9   0.0    1.4  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.031   14.2   0.0    1.6  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.19   1.1e+03       5      30 ..      87     112 ..      84     125 .. 0.86
   2 !  177.7   0.0   4.5e-56   2.7e-52       1     242 [.     159     385 ..     159     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.19
  Mannitol_dh_C   5 fpntmVDRIvpaatddelakleeelg 30 
                    f + +VD +++a++++ l k++ +++
     CDO68268.1  87 FADPAVDLVTTAVGPNVLDKIAVTIA 112
                    78889***********9999998765 PP

  == domain 2  score: 177.7 bits;  conditional E-value: 4.5e-56
  Mannitol_dh_C   1 esvgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfv.kgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaG 95 
                    e+vgf n+ VDRIvp           +  +   pl+v vE F++Wv+++++    rp+ +l gv+l++++++y+erKl++LN gHa++aylg+l+G
     CDO68268.1 159 ENVGFANCSVDRIVPPF---------DPKNSSTPLDVGVEGFYEWVVDEKALhRTRPDVKLKGVKLTASLDAYIERKLFTLNCGHAITAYLGFLKG 245
                    68*************87.........3445689**************987751689**************************************** PP

  Mannitol_dh_C  96 yqtiheamkdeeiraivkkllteevapllkkv...deqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgv 188
                    y+ti+ea+ deeir  v+++l +e  + l +    de+++ +Y +k +eRF+Np +kd++ rv+++     p r+l++ +rl+   + + + ++g 
     CDO68268.1 246 YNTIDEAIRDEEIRDTVRNALLNEGGAALRRKhkfDEEEYRQYVEKTMERFANPRLKDEIVRVGRQ-----PLRKLAKGDRLLG--PAYMARQYG- 333
                    *****************9998888777766554889******************************.....************9..*********. PP

  Mannitol_dh_C 189 alwirylegvaeggnyiekeDpqleelqeaallakervkavlaekeileedlaq 242
                    +   ++ +g+a+++ y  ++D+q+ elq+   +++ ++++++ae++++++ +++
     CDO68268.1 334 LPIDNLAKGIAAAFLYEVPDDKQSVELQK--KIDNIGIEQAVAEVTGFQKGSKE 385
                    *****************************..89999999999999999987665 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0     6e-29   3.6e-25       2     151 .]      11     134 ..      10     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 6e-29
                  EEEEES-SHHHHHTHHHHHHHHTT--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-HHHHHHHHTSTT--EEEE- CS
  Mannitol_dh   2 rivhfGaGnfhRahqayiddLlaeegldwgivevnlrevdareaLkaqdelyvviekgeeskearlvgsvnavlsveedlealieamaePeirivslt 99 
                  +++hfGaGn++ +   +i+ Ll ++g+++ +++vn+ + ++   L++qd+++v+i++ ees++   v++v+ v+s ++d   +++ +a+P +++v+++
   CDO68268.1  11 KAIHFGAGNIGHG---FIGPLLVDSGYHVVFADVNKDVIQK---LNEQDSYEVLILD-EESEQRASVSDVSGVVSTSND---IVHVFADPAVDLVTTA 98 
                  79***********...**********************999...*************.99999*************987...**************** PP

                  --TTTBETTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHTT----EEEE-SS- CS
  Mannitol_dh 100 vtekGidatgeletdlpaiaadlakpellvealkrrraaglkpltiisCdnv 151
                  v++          + l +ia  +a++      l+ rr+  + pl+ii+C+n+
   CDO68268.1  99 VGP----------NVLDKIAVTIAQG------LQARRKTDAGPLNIIACENM 134
                  ***..........*************......9******************8 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.1e-06     0.031       5      86 ..      15      99 ..      12     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-06
                E--SCCHHH.HHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH...C-SEEEE-S CS
     3HCDH_N  5 iGaGtmGag.iaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav...dadlviEav 86
                 GaG +G+g i  +++ +g++Vv  d++++ ++k +e+ + ++  l e+ + ++++v+++   +s+++d+ ++     +dlv  av
  CDO68268.1 15 FGAGNIGHGfIGPLLVDSGYHVVFADVNKDVIQKLNEQDSYEVLILDEESE-QRASVSDVSGVVSTSNDIVHVFadpAVDLVTTAV 99
                6********667899999****************99987776655555444.4478889999999999987765433467776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2946.18
//
Query:       CDO68269.1  [L=251]
Description: hypothetical protein BN946_scf184842.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1716.62
//
Query:       CDO68270.1  [L=604]
Description: hypothetical protein BN946_scf184842.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4122.33
//
Query:       CDO68271.1  [L=770]
Description: hypothetical protein BN946_scf184842.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-191  638.6  16.9   1.6e-191  638.1  16.9    1.2  1  Cullin           Cullin family
    2.2e-27   94.9   3.4    7.6e-27   93.1   3.4    2.0  1  Cullin_Nedd8     Cullin protein neddylation domain
  ------ inclusion threshold ------
      0.055   13.4   0.1       0.23   11.4   0.1    2.1  1  DUF1727          Domain of unknown function (DUF1727)
      0.058   13.7   0.3       0.35   11.2   0.1    2.4  3  Rrf2             Transcriptional regulator
       0.12   12.7   6.2        1.4    9.3   0.1    3.9  4  Penicillinase_R  Penicillinase repressor
       0.24   12.0   2.0       0.39   11.3   0.1    2.3  2  Phage_rep_O      Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  638.1  16.9  5.5e-195  1.6e-191       1     609 [.      24     668 ..      24     678 .. 0.93

  Alignments for each domain:
  == domain 1  score: 638.1 bits;  conditional E-value: 5.5e-195
      Cullin   1 Wekleeaiqeilk...knvsklsfeelYravynlvlsk...................ekkqgekLydklkelieehlkellkellkeesdeelLkalkk 77 
                 W+ lee++++i++   + vs +++++lY+ +yn+++s+                   ++  g++Ly++l +++ +hlk+l+ +  ++ +de lL+++ +
  CDO68271.1  24 WAYLEEGVDHIMTklqTGVSYSKYMSLYTVAYNYCTSSkmhgaagdavgggighrtgANLMGSDLYNNLIRYFVNHLKTLRAQS-DALQDEALLRYYAQ 121
                 99**********656359******************99*******************8999********************987.8888999******* PP

      Cullin  78 eWedhktsmkmirdifmyldrvyvk.klp.......svydlglelfrdhvf.r.iklkdrlieallkliekeRegevidrsllksviemlvelgedse. 165
                 eW++++t++++i+++f yl+r+ vk +++       +vy+l+l+++++++f + ++  ++l  a+l+lie++R+ge+id+ l+k+v++++v+lg d++ 
  CDO68271.1 122 EWDRYTTGANYINRLFTYLNRHWVKrERDegrkgvyPVYTLALVQWKSNFFlHvQSKDQKLAGAILRLIERQRNGETIDQGLVKKVVDSFVSLGLDESd 220
                 *********************776642224445555***************776444678***********************************9997 PP

      Cullin 166 ....dkkvYeeeFekafleateefYraeaeellaensvaseYlkkaeerleeEeervekyldsstkkkllevleeelikkhleelleeelkklledekl 260
                     + +vY+e++e +fl+ate++Yr+e+e++laensva +Ylkkaeerl+eEe+rve+yl+++t+k+l++ +e++li++h++ + e+ +++ll+ +k 
  CDO68271.1 221 inkvSYEVYREHLEAPFLDATEKYYRQESEKFLAENSVA-DYLKKAEERLREEEDRVERYLNTNTRKALIQKCEHVLIREHADLMWEN-FQQLLDYDKD 317
                 6655555****************************9555.************************************************.*****977** PP

      Cullin 261 edLkrlykllsrvd.gleeLrkaleeyikeeg.kaivkdake...kektedakkyveklLelkdkfdklvkeafnndkefekaldeafeefvnknkv.. 352
                 edL+r+y ll+r++ gle+Lrk++ee++k++g +a++k   e   ++++ d+k yv++lLe+++k ++ v+++f+++ +f +ald+a++efvn+n+   
  CDO68271.1 318 EDLQRMYALLARIPeGLEPLRKKFEEHVKRAGlAAVEKLVGEggaDATEVDPKAYVDALLEVHQKNSETVTRSFRGEAGFVAALDKACREFVNRNAAtg 416
                 *************55*****************8888877666999999*********************************************99889* PP

      Cullin 353 ..nsksaellakYiDelLkkglkglseeeleekldkvlvlfryiedKDvFekyYkkhLakRLllgksasddaEksmiskLkeecGseftskLegMfkDi 449
                   ++ks+ellak++D lL+k++k ++ee+le+ l+kv+v+f+yi+dKDvF+++Y+ +L+kRL++g sasd+aE smiskLke+cG+e+t+kL++Mf+D+
  CDO68271.1 417 tsTTKSPELLAKHADALLRKNNKMAEEEDLESALNKVMVIFKYIDDKDVFQQFYTTKLSKRLIHGVSASDEAEASMISKLKEACGFEYTNKLQRMFTDM 515
                 *999*********************************************************************************************** PP

      Cullin 450 klskdlnkefkeyleeekkkkkkvdlsvkVLtagaWpterskesevsvklpeeledlieeFeefYkskhsgrkLtWlhslgsaelkatfpkkkyelqvs 548
                 +lskdl+++fke+++ +++++ ++++s++VL +++Wp ++++    ++++p+++  ++ +F ++Y++khsgrkLtWl+++++ el++++ ++ky l +s
  CDO68271.1 516 SLSKDLTDNFKERMQ-QNHDDMDINFSIMVLGTNFWPLSPPT---HEFIIPQDILPVYTRFSQYYQQKHSGRKLTWLWNYSKNELRTNYLNQKYILMTS 610
                 **************8.777779***************88875...58**************************************************** PP

      Cullin 549 tfqmvvLllFndeeeklsyeeiqeatglpekeLkrtLqsLavakkarvLlkepks.kdvept 609
                  +qm+vLl++n++ ++ls+eei +at+++++ Lk+ L  L+   ka++L+ e++   d++p+
  CDO68271.1 611 SWQMAVLLQYNNN-DTLSFEEIFNATAISKDILKQVLAVLV---KAKILINEETDqYDLNPN 668
                 ***********55.9*************************9...799***987332355543 PP

>> Cullin_Nedd8  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   3.4   2.6e-30   7.6e-27       1      61 [.     700     760 ..     700     762 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 2.6e-30
  Cullin_Nedd8   1 dRklaiqaaIVRiMKsrktlshneLvsevieqlskrftpsiadikkrIesLiekeYleRde 61 
                   dRk++iqa+IVRiMK+rkt++ + L++evi q+s+rftp+i dikk I++L+ekeY+eR e
    CDO68271.1 700 DRKYVIQASIVRIMKARKTMKNQALIQEVITQISQRFTPKIPDIKKAIDHLLEKEYIERVE 760
                   8**********************************************************98 PP

>> DUF1727  Domain of unknown function (DUF1727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.8e-05      0.23      30      83 ..     577     630 ..     569     657 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.8e-05
     DUF1727  30 draadgtdvsWlwDvdfeklaeskvkkvvvsGeraeDmalRLkyagveeekiei 83 
                 +++++g+  +Wlw    ++l+++  ++ ++  + ++ ma+ L+y++ ++ ++e 
  CDO68271.1 577 QQKHSGRKLTWLWNYSKNELRTNYLNQKYILMTSSWQMAVLLQYNNNDTLSFEE 630
                 57889*****************99********************9987665555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         6   1.8e+04      37      52 ..     128     143 ..     125     148 .. 0.70
   2 ?   11.2   0.1   0.00012      0.35      14      55 ..     614     655 ..     609     659 .. 0.87
   3 ?   -2.3   0.0         2   6.1e+03      29      61 ..     730     762 ..     721     763 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6
                 S-HHHHHHHHHHHHHT CS
        Rrf2  37 ispsylekilakLrka 52 
                 + ++y+ ++++ L+++
  CDO68271.1 128 TGANYINRLFTYLNRH 143
                 5567888888877764 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
                 HHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2  14 llyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55 
                 +++L + +++ ++s eei + + is+ +l+++la L ka+++
  CDO68271.1 614 MAVLLQYNNNDTLSFEEIFNATAISKDILKQVLAVLVKAKIL 655
                 566667777778**************************9986 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2
                 HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2  29 eeiaerqnispsylekilakLrkaglvksvrGk 61 
                 ++i++r+  + + ++k + +L ++++++ v+G 
  CDO68271.1 730 TQISQRFTPKIPDIKKAIDHLLEKEYIERVEGT 762
                 567777766667789999999999999999996 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        51      27      63 ..     119     158 ..     100     221 .. 0.79
   2 ?   -1.3   0.1      0.88   2.6e+03      81     111 ..     467     498 ..     460     531 .. 0.52
   3 ?   -2.2   0.1       1.7   5.1e+03      52      85 ..     577     610 ..     574     632 .. 0.68
   4 ?    9.3   0.1   0.00045       1.4       8      62 ..     712     768 ..     706     770 .] 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
                      --GGG--.-HHHHHHHHHHH...HHTTS-EEEEE.TTEEEEE CS
  Penicillinase_R  27 leeekel.aysTVktllrrL...vkKgllsreke.grafiYs 63 
                       ++e  +  y+T +  ++rL   +++++++re++ gr+ +Y 
       CDO68271.1 119 YAQE--WdRYTTGANYINRLftyLNRHWVKRERDeGRKGVYP 158
                      4444..8789999999999955558********999*99995 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.88
                      XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
  Penicillinase_R  81 dklfegsvkelvaafveee.klseddleeLre 111
                      ++++++++++ + + v+ + +++++ + +L+e
       CDO68271.1 467 QQFYTTKLSKRLIHGVSASdEAEASMISKLKE 498
                      55555555544444444433444444444443 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
                      EEEEETTEEEEE----XXXXXXXXXXXXXXXXXX CS
  Penicillinase_R  52 srekegrafiYsplvseeeavasavkqlldklfe 85 
                      +++++gr+  +  + s++e++ + ++q    + +
       CDO68271.1 577 QQKHSGRKLTWLWNYSKNELRTNYLNQKYILMTS 610
                      6788899999999999999998887776555554 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00045
                      HHHHHHHHS-.EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETT.EEEE CS
  Penicillinase_R   8 vmeilwekge.atvkevveeleeekelaysTVktllrrLvkKgllsrekegr.afiY 62 
                      +m++  + ++ a ++ev+++++++ +++   +k  + +L++K++++r +  r +f+Y
       CDO68271.1 712 IMKARKTMKNqALIQEVITQISQRFTPKIPDIKKAIDHLLEKEYIERVEGTRdTFAY 768
                      5666555555599**********************************9985515666 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.39      47      91 ..     623     668 ..     603     671 .. 0.90
   2 ?   -1.6   0.3       1.4   4.1e+03      49      90 ..     681     722 ..     678     726 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
  Phage_rep_O  47 sdwisnsqlveltgisrtkvskalkeLirekviikeg.rkvgvnkn 91 
                  +d +s +++++ t+is++ ++++l  L+++k++i e+  ++  n n
   CDO68271.1 623 NDTLSFEEIFNATAISKDILKQVLAVLVKAKILINEEtDQYDLNPN 668
                  6889999***************************999888887765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
  Phage_rep_O  49 wisnsqlveltgisrtkvskalkeLirekviikeg.rkvgvnk 90 
                  +i+ +q +e t++ +  v + +k+ i+++++ + + rk+  n+
   CDO68271.1 681 PIKAEQKAESTDVLK-TVDEDRKYVIQASIVRIMKaRKTMKNQ 722
                  577777788888765.589999999999999998877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1355  (0.0755759); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5005.26
//
Query:       CDO68272.1  [L=340]
Description: hypothetical protein BN946_scf184842.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.1   2.6       0.25   11.1   0.0    2.2  2  NCE101    Non-classical export protein 1
        7.1    7.0  17.7       0.24   11.7   3.2    3.2  3  DUF308    Short repeat of unknown function (DUF308)


Domain annotation for each model (and alignments):
>> NCE101  Non-classical export protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.9      0.33     3e+03      10      19 ..      12      21 ..      11      24 .. 0.84
   2 ?   11.1   0.0   2.8e-05      0.25      14      35 ..     171     192 ..     170     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.33
      NCE101 10 lLaifiGvaa 19
                lL+++iG + 
  CDO68272.1 12 LLGLIIGACL 21
                89*****875 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 2.8e-05
      NCE101  14 fiGvaaYylyEkrterpeghrL 35 
                 + G + Yyly krt++ +  +L
  CDO68272.1 171 IAGAMCYYLYKKRTGLKRTDSL 192
                 679***********99988877 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0031        28      21      62 ..      10      49 ..       5      56 .. 0.74
   2 ?   11.7   3.2   2.7e-05      0.24      35      72 ..      87     124 ..      82     125 .. 0.82
   3 ?   -2.0   1.2      0.51   4.5e+03       7      19 ..     208     220 ..     193     236 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0031
      DUF308 21 llalvllfGilllvsGivqiiaafaarkknrggrwlglllGi 62
                ++ l l++G++l    i+q +a+f  ++++  +++++ l+ i
  CDO68272.1 10 AALLGLIIGACLYGITIMQTFAYF--KNYTTDSKFVKSLVLI 49
                567889******************..6666666664444433 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.7e-05
      DUF308  35 sGivqi.iaafaarkknrggrwlglllGilyliaGllll 72 
                 +G++++ ++af+ar+ +  +r + +  Gi++++a+l ++
  CDO68272.1  87 AGLIGLiVEAFFARRVWMMSRNWVV-TGIILILAALHFV 124
                 56666627*************9766.9*******99775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.51
      DUF308   7 ivlGilalllPva 19 
                  ++G ++++  +a
  CDO68272.1 208 SIIGTICVVAFGA 220
                 3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2351.37
//
Query:       CDO68273.1  [L=552]
Description: hypothetical protein BN946_scf184842.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-40  140.1   0.0    1.4e-40  139.6   0.0    1.1  1  HAT_KAT11       Histone acetylation protein
  ------ inclusion threshold ------
        1.2    7.0   5.5        1.9    6.5   5.5    1.2  1  Totivirus_coat  Totivirus coat protein


Domain annotation for each model (and alignments):
>> HAT_KAT11  Histone acetylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0   1.6e-44   1.4e-40       8     348 ..      13     433 ..       5     437 .. 0.84

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 1.6e-44
   HAT_KAT11   8 vlpkdekfkirhlsskpkevealivakkkeaeskpektykekhflalsendd...keviifglevlvYitvfdeanerliFVSkaDstgylkllkvkva 103
                  lp ++ f+i++l s+p++ + l+ +   +      +ty +  f+ lse+       v++ ++e  vY    ++ +  ++++Sk+Ds+g+ +   ++++
  CDO68273.1  13 DLPGTRTFHIHVLISAPRKHNGLFPY--VH---PRPRTYLQDVFILLSEQISddaPRVLVTAIEASVYNI--PATSSGVLYISKVDSSGHATA-PSPTS 103
                 48999*************95554443..33...4457***9***9999876545678************9..999******************.***** PP

   HAT_KAT11 104 divetllsylisikqreylrkv.klsLFtraqdqYLFPnssknpkKHvLddkgLlkWWikvldkilr....esakssatkaklvipGkdkletrkfipa 197
                  +v+++l+y ++  +r+ +  +  + LF+raq qYLFPns + + K  L+d +L  WW+++  ++      + + s ++  + ++pG  +le ++ +  
  CDO68273.1 104 ALVRAFLTYYADPTTRPIAVDHlWIQLFARAQGQYLFPNSADYEGKRPLSDVKLCAWWKRIFSEVAAelavRLKGSGKVRLYYILPGYSELEAAHSLGH 202
                 ************99999988772568*************************************9998555444445556777899******99988865 PP

   HAT_KAT11 198 taksdn..........Wlvghileeisd........dk.....avyeiPlFpDDPKgrfleelieE................................. 240
                   ++            W+ gh+ ++++         ++         iP F+DDPK+rf++e+++                                  
  CDO68273.1 203 ALSRSLpadnrvasvqWTYGHPYSQTEIplpcpgsqKTdegphLGHFIPWFDDDPKSRFIDEIAHTsnsegvrspqrkrprastssrteqdaaaaegdv 301
                 5443334667889999**********996666665511667656788*****************99999****************************** PP

   HAT_KAT11 241 ................grlksvsldqfweelafrqEfslgrlvgfigleveet.........veeddvikp......kklvkskkqyksikskikkeey 308
                                 g+l +vs d+fwe+++frqE+ +g+++gf+ +  ++           +      p      +++   +  ++ + ++++++e+
  CDO68273.1 302 eekekdkskeeprkpsGELAQVSPDEFWERMSFRQECVAGAVTGFFAMGISTPalaedklkaSQ------PsplapqPGQLAPRLVRRIVATLMNHHEF 394
                 **********************************************995555487766655322......23344457777777777788899999*** PP

   HAT_KAT11 309 dkeesaeelvqnlssellesmekkklksirgsrsqsaksa 348
                 ++ e+a  ++++l++ + + +e ++  +i  s++ s +++
  CDO68273.1 395 STRERAIRATETLENAIKSLCEDDA-PVIPASAAASSAEQ 433
                 *************999999998885.66666666665555 PP

>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.5   0.00021       1.9     641     751 ..     398     509 ..     377     518 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00021
  Totivirus_coat 641 setappkkeanrtgeaglvsergaeqvsaeaetakpervargdpvrltahhaalrapqlpragga.sdGgggvppppalgaaagdapsppssgss 734
                     +++ ++ ++ ++  +    ++  + ++sa a+ a++ r   g p+ + +  aal+ap++p +g +  d gg++ p+ ++ + + + +sp + +s 
      CDO68273.1 398 ERAIRATETLENAIKSLCEDDAPVIPASAAASSAEQARDDTGRPATPEPSSAALEAPRTPPPGRShLDVGGSAVPEISPNPFPDPIASPETYTSY 492
                     4555555666666666666666677888889999999999******************9997754156666666666666666677777777776 PP

  Totivirus_coat 735 laasaeapaepeppaae 751
                      + s +   +p +p ++
      CDO68273.1 493 IHGSIAVRNPPLAPRVA 509
                     66666666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3643.80
//
Query:       CDO68274.1  [L=863]
Description: hypothetical protein BN946_scf184799.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-13   51.1   0.1    2.2e-13   50.3   0.1    1.3  1  DUF659    Protein of unknown function (DUF 659)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   1.2e-17   2.2e-13       1     136 [.     236     371 ..     236     386 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.2e-17
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkvieevgaen.V..vq 96 
                 Ps++ L+++++  +v+++    +      + + ++i +Dg t +++r+l++f+v+c+++++ ++++d+s+e ktae+l++++ +v+  +  e  V  + 
  CDO68274.1 236 PSRKVLTTRIIPGTVKQYRSIAQ---LACKGKLVTIQCDGFTAANRRHLVSFMVTCERKVYTVRTFDTSTEPKTAENLVKMIYQVMRMLEDEWeVipIA 331
                 78888888888888888855555...588999********************************************************99998751257 PP

      DUF659  97 vitdnasnykkagklleekyptifwtpcaahclnlmledi 136
                 + td + + ++a  ++  ++++++   c+ah++++++ d 
  CDO68274.1 332 ITTDCSGESRAARARILGERSSLVTPDCYAHQVERVVIDY 371
                 7899999999***********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5751.81
//
Query:       CDO68275.1  [L=451]
Description: hypothetical protein BN946_scf184799.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-48  164.6   0.0    4.4e-48  164.2   0.0    1.1  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00012   21.5   0.0    0.00019   20.8   0.0    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00096   18.8   0.0     0.0016   18.1   0.0    1.4  1  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.041   13.0   0.0      0.065   12.3   0.0    1.2  1  FAD_binding_2   FAD binding domain
      0.065   13.4   0.1       0.21   11.8   0.0    1.9  2  gp12-short_mid  Phage short tail fibre protein gp12, middle d
      0.072   11.6   0.0       0.11   11.1   0.0    1.2  1  Mqo             Malate:quinone oxidoreductase (Mqo)
      0.082   13.5   0.0        2.8    8.5   0.0    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   1.7e-51   4.4e-48      95     341 ..      20     304 ..       7     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 1.7e-51
  K_oxygenase  95 RkefedYlrWvasqleeq...vrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee. 187
                   +e++dYl+W+a+++e++   vr+geev  ++  ++     ++v+s++ ++gee  +++rn++l+ G++pk+P++l  + +++r++Hs+ yl+  e+ 
   CDO68275.1  20 NTEYADYLAWAADSVEQRgiqVRYGEEVVGLTRLDDG---TVEVRSRNlQTGEEFARRSRNIILSPGGTPKLPPALSVVAPHPRIIHSAYYLSAVEDf 114
                  369*************86666***********99975...79****999**********************************************99* PP

  K_oxygenase 188 ......llakkriaVvGsGqSaaeifedllrrqkk........velklvtrsealeplddspfvneifsPeyvdyfyslpe.ekreallkeqkatnyk 270
                        + ++ riaV+G+GqS  e+++dl++r ++         el++++r+ +l+p+dd+pf neif+P+ +d +++lp+ ++r+++l+e++ tny+
   CDO68275.1 115 fasvphDGKPLRIAVIGAGQSSTEVLMDLHSRLNTlpvsggrkHELEMIFRKGSLKPSDDTPFSNEIFDPATTDMWFNLPSkRDRQTVLREYNPTNYS 212
                  ****99999***********************543344455669***********************************99689************** PP

  K_oxygenase 271 gvdaelieelyeelyeqkvkg.............eerlrllpnrevesaeae........gkgeveltlrneesgeeetlevdavvlATGYr 341
                  +v++++i++lye +y+qk+ +             ++r++l+p++++ sae          g+++++l l+   + + +t ++ av++ TGY+
   CDO68275.1 213 VVNMRTIDSLYEVMYHQKLLDgiktrtgreeesdRTRIALRPYTSIYSAEVVpedagnaaGQESIRLILHGILDRAVSTKTYHAVFCGTGYD 304
                  ******************9988999****998755689********999877444444334569***************************7 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   7.3e-08   0.00019      63     162 ..      34     144 ..       7     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 7.3e-08
                  HHHH.CCCCHCCTCEEEE.ESCEEEEE..TEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..........SEEE CS
                  xxxx.xxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxx RF
  Pyr_redox_2  63 lnqg.ielllgeevvkid.pgkkkvkl..ekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..........kriv 146
                  ++q  i++++geevv++   + ++v++  +++++g+e+     +++l +G++p++++   v   v  + r+++sa +l+  +             ri+
   CDO68275.1  34 VEQRgIQVRYGEEVVGLTrLDDGTVEVrsRNLQTGEEFARRSRNIILSPGGTPKLPPALSV---VAPHPRIIHSAYYLSAVEDFfasvphdgkpLRIA 128
                  444449999999998887544466655004555588888888**************55555...333336777777776666656666689999**** PP

                  EES-SHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 147 vvGgGyiGvElAaala 162
                  v+G+G  ++E+ + l+
   CDO68275.1 129 VIGAGQSSTEVLMDLH 144
                  **********988776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.4e-07    0.0016     142     207 ..      20      88 ..       7     146 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.4e-07
                 EEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECT.EEEEEEEE...EEE--GGGHHHH CS
         DAO 142 qvdpakltaalaraaealGveilegtevtgleeedgkvwgve..rttp.gendaada...vVnaaGawsdll 207
                 + ++a ++a+ a+ +e++G+++++g+ev+gl + d++ ++v+  +  + ge++a +    ++++ G    +l
  CDO68275.1  20 NTEYADYLAWAADSVEQRGIQVRYGEEVVGLTRLDDGTVEVRsrN-LQtGEEFA-RRsrnIILSPGGT-PKL 88 
                 567899*************************87665556776952.44476632.33345****9944.434 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.5e-05     0.065     136     207 ..      19      89 ..       6     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
                    ...HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG... CS
  FAD_binding_2 136 tlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrall 207
                    + ++    la  ++s++++g++++   e++ L++ d++ + +  +n+++g+e++ r+++++l  gG ++ l+
     CDO68275.1  19 HNTEYADYLAWAADSVEQRGIQVRYGEEVVGLTRLDDGTVEVRSRNLQTGEEFARRSRNIILSPGGTPK-LP 89 
                    56667778889999********************999999999999*********************96.43 PP

>> gp12-short_mid  Phage short tail fibre protein gp12, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.3e-05      0.21      34      54 ..      25      45 ..       7      62 .. 0.84
   2 ?   -3.4   0.0       4.5   1.2e+04       5      15 ..     382     392 ..     380     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.3e-05
                    EEE-TT-S---SS-----SS- CS
  gp12-short_mid 34 salawnadviqqrGGqiiyGs 54
                      law ad ++qrG q+ yG 
      CDO68275.1 25 DYLAWAADSVEQRGIQVRYGE 45
                    569**************9996 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.5
                     HTTSB--SSS- CS
  gp12-short_mid   5 lnGrGattsmr 15 
                     lnG G t+ +r
      CDO68275.1 382 LNGDGQTSKVR 392
                     99999998876 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.1e-05      0.11     188     242 ..      32      85 ..       3      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
         Mqo 188 kalekkkgvelklkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGg 242
                 +++ +++g+++++++ev  l+r +dg+ +v+ ++l+tge+   +++ + +  GG+
  CDO68275.1  32 DSV-EQRGIQVRYGEEVVGLTRLDDGTVEVRSRNLQTGEEFARRSRNIILSPGGT 85 
                 444.669*******************************************99996 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0011       2.8      45      77 ..      29      61 ..      21      67 .. 0.86
   2 ?    2.2   0.0      0.11   2.7e+02       1      19 [.     126     144 ..     126     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
                HHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEE CS
   Pyr_redox 45 ilqeklekngievllntkveeiegsedg.vesvk 77
                + ++++e++gi+v+++++v+ ++  +dg ve v+
  CDO68275.1 29 WAADSVEQRGIQVRYGEEVVGLTRLDDGtVE-VR 61
                67899******************99999444.54 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.11
                 EEEEECSSHHHHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgala 19 
                 +++v+G+G +  E+   l+
  CDO68275.1 126 RIAVIGAGQSSTEVLMDLH 144
                 799*******999977774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3119.70
//
Query:       CDO68276.1  [L=126]
Description: hypothetical protein BN946_scf184799.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 873.47
//
Query:       CDO68277.1  [L=172]
Description: hypothetical protein BN946_scf184799.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-32  110.6   6.3      3e-32  110.6   6.3    1.7  2  Ribosomal_L24e  Ribosomal protein L24e
     0.0061   16.5   4.0      0.011   15.6   4.0    1.4  1  zf-FCS          MYM-type Zinc finger with FCS sequence motif
  ------ inclusion threshold ------
      0.025   15.1   1.1      0.025   15.1   1.1    1.9  3  HAGH_C          Hydroxyacylglutathione hydrolase C-terminus
       0.17   11.3   2.1       0.42   10.1   2.1    1.6  1  zf-FLZ          zinc-finger of the FCS-type, C2-C2
       0.35   10.9   3.3       0.38   10.8   0.8    2.3  2  DUF2116         Uncharacterized protein containing a Zn-ribbo


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   6.3   8.4e-36     3e-32       1      64 [.       1      64 [.       1      66 [. 0.98
   2 ?   -2.7   0.3         2   7.2e+03      35      41 ..     118     124 ..      99     133 .. 0.58

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 8.4e-36
                    XXX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX CS
  Ribosomal_L24e  1 mktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkelt 64
                    m++ekC+F+++++yPGhG  fvrnD+kvfrF+ssKc+k+fk+krnPrk++WTka+R+a++ke+t
      CDO68277.1  1 MRIEKCYFCSKSVYPGHGSAFVRNDAKVFRFCSSKCNKNFKMKRNPRKVRWTKAFRKAAGKEMT 64
                    9*************************************************************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
                     HHHHHHH CS
  Ribosomal_L24e  35 Kceklfk 41 
                     K +++ k
      CDO68277.1 118 KLKAHRK 124
                     3333333 PP

>> zf-FCS  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   4.0   3.1e-06     0.011       5      38 ..       5      37 ..       3      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.1e-06
      zf-FCS  5 rCwfCkkyikgkpeftyvlendgvvgqFCStsCl 38
                +C fC+k  + ++  ++ + nd +v +FCS+ C 
  CDO68277.1  5 KCYFCSKSVYPGH-GSAFVRNDAKVFRFCSSKCN 37
                7************.79*****************5 PP

>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.1     7e-06     0.025      22      77 ..      49     100 ..      29     111 .. 0.69
   2 ?   -1.6   0.0       1.1   4.1e+03      35      35 ..     129     129 ..     105     153 .. 0.59
   3 ?   -2.0   0.0       1.5   5.4e+03      13      31 ..     138     156 ..     128     160 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7e-06
      HAGH_C  22 krlkevkelrakgeptvpstladEkktNpFLRldepevqkavgeevevfaaLRelK 77 
                  r+ ++ ++ a +e+t+ st++ Ek+ N+  R d++ +q++    v++++++ e K
  CDO68277.1  49 VRWTKAFRKAAGKEMTIDSTIEFEKRRNVPVRYDRELIQTT----VKAMKRIAEIK 100
                 23333334445679*******************99888888....44444444444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
      HAGH_C  35 e 35 
                 +
  CDO68277.1 129 K 129
                 2 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.5
      HAGH_C  13 vepdnealkkrlkevkelr 31 
                 + p++e++k+++k  ++ r
  CDO68277.1 138 FTPESEKVKEKIKVSAKSR 156
                 5667777777776666555 PP

>> zf-FLZ  zinc-finger of the FCS-type, C2-C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.1   0.00012      0.42      14      46 ..       4      39 ..       2      47 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
      zf-FLZ 14 saCflCkkkLgegk.DiymYrGdka..FCSeeCRqq 46
                ++C++C+k+  +g+   ++    k   FCS+ C ++
  CDO68277.1  4 EKCYFCSKSVYPGHgSAFVRNDAKVfrFCSSKCNKN 39
                78************55666555553448*****765 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.62   2.2e+03       6      13 ..       6      13 ..       4      17 .. 0.78
   2 ?   10.8   0.8   0.00011      0.38      18      37 ..      30      48 ..      27      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.62
     DUF2116  6 CivCGkaI 13
                C  C+k++
  CDO68277.1  6 CYFCSKSV 13
                99999987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00011
     DUF2116 18 sfCsekCqeeyekkrkkvar 37
                +fCs kC+++++ kr+  ++
  CDO68277.1 30 RFCSSKCNKNFKMKRNP-RK 48
                69**********99975.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1210.00
//
Query:       CDO68278.1  [L=2181]
Description: hypothetical protein BN946_scf184799.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-39  132.2   0.2    1.7e-38  130.9   0.2    1.8  1  ATG_C      Autophagy-related protein C terminal domain
    1.5e-12   47.7   0.0    3.6e-12   46.4   0.0    1.6  1  Chorein_N  N-terminal region of Chorein or VPS13
    2.9e-12   46.6   0.0    1.9e-11   43.9   0.0    2.4  2  ATG2_CAD   Autophagy-related protein 2 CAD motif
    8.2e-05   22.5   0.8    0.00032   20.5   0.0    2.4  3  VPS13_C    Vacuolar-sorting-associated 13 protein C-terminal
  ------ inclusion threshold ------
      0.053   12.4   0.0       0.12   11.3   0.0    1.5  1  Apt1       Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.2   4.6e-42   1.7e-38       1      96 []    2084    2179 ..    2084    2179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 4.6e-42
       ATG_C    1 vslyasqPedlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnqldpearkesedKYK 96  
                  +s+ya+qP++++eG+++Ayssl+++l+saaqtilavp+ev+e++g +g v+avvravP+avl+P+iga+eavsktl+G++n+ldp+ r+e+edKYK
  CDO68278.1 2084 ISKYADQPTNMKEGVKSAYSSLKRNLNSAAQTILAVPMEVYERSGNEGPVRAVVRAVPIAVLKPMIGASEAVSKTLLGLQNTLDPNIRRENEDKYK 2179
                  699********************************************************************************************9 PP

>> Chorein_N  N-terminal region of Chorein or VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0     1e-15   3.6e-12       3      88 ..      26     115 ..      25     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 1e-15
   Chorein_N   3 slvskllnryLgeyv..enldrdqlkvslwsGeveLenlkLkkealdkl..elPfevkegvigklrlkipwsnlkskpvvieiedvylla 88 
                 +++s  l + Lg ++   +ld +q++ ++ sG v+ ++l+L+ ea++ l  +lP+++++g++gk++++ipw n +++ v  ++e ++l+ 
  CDO68278.1  26 RFISFALRQTLGHFLkpGQLDVQQVDSQIGSGYVQVRDLELNDEAINALisGLPVRLRDGSVGKVTARIPWPNPLTSTVGLSLESLHLTF 115
                 678999*********77799****************************8899***********************************987 PP

>> ATG2_CAD  Autophagy-related protein 2 CAD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   5.4e-15   1.9e-11       2     146 ..    1350    1493 ..    1349    1504 .. 0.87
   2 ?   -1.6   0.0      0.56     2e+03     132     154 ..    2157    2179 ..    2156    2180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 5.4e-15
    ATG2_CAD    2 lklrDcvigLnPlrlksklllvltkakldvslgkd.eqfsaklslrkaslllIDdvknlkeksskkskkersssssssqvsylskrGyvsigsissa 97  
                  lk+ D++i L    ++ +++  +++++l+++l+ + ++++++ls+  ++lllIDd+++  ++s+++s+  +s+       +  ++ Gy  ++++s +
  CDO68278.1 1350 LKILDTSIRLLAPSHPGAIVPYIGEFDLTTVLEGNsPSTTMNLSVPTLALLLIDDLSSSPDESDESSRG-QSTIPGVAYWKCAQSAGYALLAEVSDL 1445
                  7899****************************99989********************666555554433.777777777777899************ PP

    ATG2_CAD   98 kvgvtvnedkdgeksvdvevnddllvLelCADStqtLiqllndLkpPtt 146 
                   +++++ +   ++    + v++ +l L++CAD++ +L ++++d++ + +
  CDO68278.1 1446 ILSFNKIDG-VNSPDSRLLVDQGDLRLHICADTMGVLAAFISDFTSAFK 1493
                  ***988888.79999999*************************987665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.56
    ATG2_CAD  132 qtLiqllndLkpPttppkeeKyk 154 
                  +tL+ l n L p +  ++e+Kyk
  CDO68278.1 2157 KTLLGLQNTLDPNIRRENEDKYK 2179
                  79************888*****9 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.9   6.8e+03     134     167 ..    1158    1191 ..    1140    1193 .. 0.78
   2 ?   -2.7   0.0       1.2   4.4e+03       2      51 ..    1895    1943 ..    1894    1950 .. 0.72
   3 !   20.5   0.0     9e-08   0.00032     103     154 ..    1981    2031 ..    1970    2045 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
     VPS13_C  134 geglakGaksLvkktvfGvadsvskitgsvskgl 167 
                  +e+  +Ga+sL+++  f+ ++s+   t+s ++ l
  CDO68278.1 1158 TEKAGSGASSLIGSRYFARTSSLGSATDSGATSL 1191
                  56778999****9999999999999998877666 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
     VPS13_C    2 iYfeklhlqPiklhlsfslsekknkeeslekeqsllslllllnslgvtlt 51  
                  iYf++ ++ Pi+++l ++  + + +  ++ ++ +l++++  ++   +tl 
  CDO68278.1 1895 IYFQQAEVFPIDIKLDYKPRRVDYRALREGRTIELMNFF-HFDGAEMTLR 1943
                  8**************999887777766555555666666.5666666655 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 9e-08
     VPS13_C  103 NPvglfnnissGvkdlfyePiqglvkgpeefgeglakGaksLvkktvfGvad 154 
                   P+  + n++sGv+dl+  Pi  + k    ++ gl+kG++s+vk+t + ++ 
  CDO68278.1 1981 APIRSVVNVGSGVADLILLPIAQYKK-DGRLVRGLQKGTNSFVKSTAMEAIR 2031
                  59*******************98877.889****************987765 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.2e-05      0.12     219     299 ..    1795    1880 ..    1768    1910 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.2e-05
        Apt1  219 eigslqglNllpnaiypellspy....edepedkkkpmlrvywkmlepvgGipvle.hfevnlfPlkiqLeeevgkklfeYiFPkr 299 
                  ++ ++++l+  + ++ +++l+      + +  +++++m+rv+ ++l pv G p  e ++  ++ Pl+++++++  + l +++  k+
  CDO68278.1 1795 TVRDVEILDHIKTSTWKKFLTSLqtdsRGNVRESDSNMVRVELRTLHPVPGHPSEEaRLRAKILPLRLHVDQDALDFLKQFFSFKD 1880
                  7889999999999999999999999996678899*******************98747999************9999999885443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.49
# Mc/sec: 13264.07
//
Query:       CDO68279.1  [L=1182]
Description: hypothetical protein BN946_scf184799.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-74  251.1   0.3    1.6e-74  251.1   0.3    1.7  2  NatB_MDM20       N-acetyltransferase B complex (NatB) non cat
    1.8e-10   41.4   0.0    4.5e-10   40.1   0.0    1.6  1  RPA_C            Replication protein A C terminal
    1.3e-08   35.2   6.6     0.0096   16.4   1.2    4.1  3  TPR_19           Tetratricopeptide repeat
    6.7e-06   26.5   1.3       0.81   10.7   0.0    6.7  7  TPR_14           Tetratricopeptide repeat
    0.00019   21.3   0.0    0.00043   20.2   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
     0.0016   19.1   0.6         15    6.3   0.4    4.1  3  TPR_16           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.028   14.2   0.3         45    4.1   0.0    4.4  4  TPR_1            Tetratricopeptide repeat
      0.062   13.7   2.4       0.14   12.6   0.3    2.7  2  BTAD             Bacterial transcriptional activator domain
      0.072   12.3   4.8       0.42    9.8   1.1    2.7  2  TPR_15           Tetratricopeptide repeat
       0.14   12.0   0.2       0.32   10.8   0.2    1.5  1  RMI2             RecQ-mediated genome instability protein 2
        0.2   11.9   0.1        0.2   11.9   0.1    3.3  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
       0.85    9.0   3.4       0.71    9.2   0.3    2.4  3  Coatomer_E       Coatomer epsilon subunit


Domain annotation for each model (and alignments):
>> NatB_MDM20  N-acetyltransferase B complex (NatB) non catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.2   1.8e+03     189     250 ..      20      92 ..      16      94 .. 0.70
   2 !  251.1   0.3   1.1e-77   1.6e-74      18     345 ..     282     598 ..     254     626 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
  NatB_MDM20 189 allaahalldlseks...........vdstlliqaillLeflltksphNfqlkLlLvrlYlllGagslalkly 250
                 a+la + +l+ + ++           v+s+++ +a+ll +++l+  p +   +  ++++   lG +  ++++y
  CDO68279.1  20 AILACNKVLKKQPNNllvkalkalalVRSQKVEEALLLCDEVLASKPADDATLAAMMHVLRGLGRHMDMVTMY 92 
                 6666666666666666666666777777888888899999999888888887777777777777776666666 PP

  == domain 2  score: 251.1 bits;  conditional E-value: 1.1e-77
  NatB_MDM20  18 kesleevqkfieelikkeeakspksRnpyLArLelikrlrkrskkaeeektslsglvelileYfekfgsKlccfeDLkkYleeLskeerkeflekvssl 116
                 +e + ++ +f  +++++      k+R+ +LA+Lel kr+r++  ++       ++l +l++ Yf++fg K+cc+eDL++Y+e+ + ee ++ ++ ++  
  CDO68279.1 282 SERIPKAREFFGKVVEADG---VKDRSGHLALLELEKRVRQHGLATD-----PASLNSLLEGYFQSFGGKACCYEDLRPYVEL-EGEELARWTAVLE-- 369
                 4567778888888876664...567*****************99654.....444679***********************76.7777777777777.. PP

  NatB_MDM20 117 skseseseeekkekklrrlinalklerclgeheklseeekeelvtellaiYraslrlgaelletesqpsddlallaahalldlseksvdstlliqaill 215
                     +++ +  + ++++r+ina+kl r+  + ++l+ + + + + + l +Y ++l+lg++l + + qp+ddla+l+a+a ++ +++++++  l++a++l
  CDO68279.1 370 ----KQTPTFASVSDIWRYINAQKLLRYNLSAASLTPDAETKRAVQYLDAYLEGLKLGKDLPSYDLQPADDLAILSAQAFVNIWKQTGEEAFLYNAAAL 464
                 ....334568899*************99989999999999999******************************************************** PP

  NatB_MDM20 216 LeflltksphNfqlkLlLvrlYlllGagslalklyskLdiKqiQlDtlghllftrlstlgpfska....lslleqalrfYesaeketpesiakayekgs 310
                 Le+++++s++ +q++L L+r+Y llGa slal++y++ ++Kq+Q+Dtl+h ++tr+st   +s+      s + ++ r+Y s+++et+e+i++a+  ++
  CDO68279.1 465 LEYAIARSKTSYQIRLHLIRIYRLLGAPSLALEHYRSINVKQVQNDTLSHFVLTRASTFSLSSMGdltyTSECLESSRIYLSNSEETAEFIVRAFGSEK 563
                 *******************************************************99999998555667999*************************** PP

  NatB_MDM20 311 YskieefiefqerLknSlqramvaleerrlqrllg 345
                 Ys+i++fief++rL+nSlqr  v++e  r+ +  +
  CDO68279.1 564 YSQIPNFIEFEDRLDNSLQRDLVKMEHVRMRIAHE 598
                 ******************************98877 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     3e-13   4.5e-10      31     103 ..    1095    1175 ..    1065    1176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 3e-13
                  XXXXXXXXXXXXXX..XSXHHHHHHHHHHHH.SXSTTTEEHHHHHHHS.......TSXHHHHHHHHHHHHHTTSEEESSST CS
       RPA_C   31 tdgalsgnqaklan.kgltalaqqvlnlikqspeseeGvhvdeiaqkl.......rlsvndvkqavdeLsneGiiYsTiDd 103 
                  +++++ g+ a +a+ + l +l++ ++ +i ++p+s+eGvhv  ia+ +         + n + qa+d L+++G++YsTiD+
  CDO68279.1 1095 YTAQPTGSAAISAQfSHLPPLQKDIITFILSQPKSDEGVHVAAIARHIattsgsqAGDANVISQALDALMDQGHVYSTIDE 1175
                  33444444444444567999*************************9876332222245789*******************9 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.2   6.4e-06    0.0096       2      65 ..      12      76 ..      11      77 .. 0.92
   2 !   10.6   0.0   0.00041      0.61      13      66 ..      91     145 ..      89     147 .. 0.94
   3 !    8.0   0.4    0.0027       4.1       9      45 ..     460     496 ..     458     503 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.4e-06
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasLl 65
                l+ g   +A+ +  ++l++ p+n+ +++l A al+ +  ++eA  l+d++++++p d a +a+ +
  CDO68279.1 12 LDTGSNKSAILACNKVLKKQPNNLLVKALKALALVRSQKVEEALLLCDEVLASKPADdATLAAMM 76
                67788899999*********************************************768888765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00041
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasLlA 66 
                 ++e a+++ p+n+e+  +   a +  g++++A+++  +  ++++dd   y+s++ 
  CDO68279.1  91 MYEDAYKQQPGNEELGTQTFFANVRIGNWKAAQQIATKMHKQFQDDhYLYWSVMS 145
                 7999*****************************************9899999885 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0027
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 +A+alle+a++ +  +  +rl L++++  lg +  A 
  CDO68279.1 460 NAAALLEYAIARSKTSYQIRLHLIRIYRLLGAPSLAL 496
                 69*************************9999887776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.23   3.4e+02      14      42 ..      14      42 ..       8      44 .. 0.81
   2 ?    5.2   0.4     0.031        46       7      41 ..      41      75 ..      35      76 .. 0.83
   3 !   10.7   0.0   0.00054      0.81       3      37 ..      71     105 ..      69     112 .. 0.91
   4 ?   -1.9   0.0       5.9   8.8e+03      13      35 ..     115     137 ..     108     147 .. 0.80
   5 ?   -0.0   0.0       1.5   2.2e+03      10      25 ..     191     206 ..     187     207 .. 0.87
   6 ?   -1.0   0.0         3   4.5e+03      16      29 ..     405     418 ..     396     432 .. 0.84
   7 ?    1.4   0.0      0.52   7.8e+02       4      27 ..     479     502 ..     476     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
      TPR_14 14 lGdpdeAiallrralalaPddaeawllla 42
                 G  + Ai +++++l+++P+++ +  l a
  CDO68279.1 14 TGSNKSAILACNKVLKKQPNNLLVKALKA 42
                578899***************98776655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.031
      TPR_14  7 laeallalGdpdeAiallrralalaPddaeawlll 41
                 a al ++++ +eA+ l++++la  P+d++++ ++
  CDO68279.1 41 KALALVRSQKVEEALLLCDEVLASKPADDATLAAM 75
                48899******************999888776554 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00054
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                  l+a+ ++l+ lG++ ++++++++a +++P+++e+
  CDO68279.1  71 TLAAMMHVLRGLGRHMDMVTMYEDAYKQQPGNEEL 105
                 578999*************************9875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 5.9
      TPR_14  13 alGdpdeAiallrralalaPdda 35 
                 + G++++A +++ ++ +++ dd 
  CDO68279.1 115 RIGNWKAAQQIATKMHKQFQDDH 137
                 6699**********999998875 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 1.5
      TPR_14  10 allalGdpdeAiallr 25 
                 +l +lG +deA ++ +
  CDO68279.1 191 VLKQLGLYDEAFEMVE 206
                 799*********9976 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 3
      TPR_14  16 dpdeAiallrrala 29 
                 ++++A+++l+++l+
  CDO68279.1 405 ETKRAVQYLDAYLE 418
                 6889******9987 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.52
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 +l l ++++ lG p  A++++r +
  CDO68279.1 479 RLHLIRIYRLLGAPSLALEHYRSI 502
                 78899****************987 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.9e-07   0.00043       1      68 [.     967    1035 ..     967    1044 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.9e-07
                       EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEE CS
  tRNA_anti-codon    1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr....eeatklaenlkeGdvvrvtGrvkrrpggelel 68  
                       Vt ++ v s+  +       + l+Dgt+++++  +     +++++  e+++eG++vrv G +k + ++   +
       CDO68279.1  967 VTAVAQVLSV--QPQTTNYIYLLNDGTANMEARQWVdpnvDDDSASREEVREGTYVRVLGSLKVFGNK-RYI 1035
                       5667888888..8888888999*******************************************877.334 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026        39       7      67 ..      11      68 ..       8      72 .. 0.78
   2 ?    2.4   0.0      0.17   2.6e+02       3      29 ..      75     101 ..      73     111 .. 0.86
   3 ?    6.3   0.4      0.01        15      16      59 ..     461     501 ..     460     503 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.026
      TPR_16  7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                al+ g    A+ a + +lk++   P +     l+++a+ r + ++eA+ l+++ l+  p +
  CDO68279.1 11 ALDTGSNKSAILACNKVLKKQ---PNNLLVKALKALALVRSQKVEEALLLCDEVLASKPAD 68
                666666667777777888888...8888888888888888888999999999999888876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
      TPR_16   3 laraalragdyddAaaaleaalkrdps 29 
                 + + ++ +g+  d + ++e a k++p+
  CDO68279.1  75 MMHVLRGLGRHMDMVTMYEDAYKQQPG 101
                 6788999******************65 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.01
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 Aaa+le a++r + s +    +l+l +++  +g   +A++ yr+
  CDO68279.1 461 AAALLEYAIARSKTSYQ---IRLHLIRIYRLLGAPSLALEHYRS 501
                 999*********66665...*******************99986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.03        45      19      34 .]      19      34 ..      12      34 .. 0.90
   2 ?    0.2   0.0       0.5   7.5e+02       7      32 ..      41      66 ..      39      68 .. 0.84
   3 ?   -0.7   0.0         1   1.5e+03      10      21 ..     191     202 ..     190     204 .. 0.83
   4 ?    3.2   0.0      0.06        89      10      25 ..     485     500 ..     478     501 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.03
                HHHHHHHHHHHHSTTH CS
       TPR_1 19 eAleyyekALelnPnn 34
                 A+ +++k+L+ +Pnn
  CDO68279.1 19 SAILACNKVLKKQPNN 34
                69*************8 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.5
                HHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnP 32
                +++a+ + +k +eAl  ++++L   P
  CDO68279.1 41 KALALVRSQKVEEALLLCDEVLASKP 66
                67888889999*********997555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1
                 HHHHTT-HHHHH CS
       TPR_1  10 ayfklgkydeAl 21 
                 ++ +lg ydeA 
  CDO68279.1 191 VLKQLGLYDEAF 202
                 5789******96 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.06
                 HHHHTT-HHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyye 25 
                 +y+ lg +  Ale+y+
  CDO68279.1 485 IYRLLGAPSLALEHYR 500
                 8**************7 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   9.3e-05      0.14      64     114 ..      71     121 ..      27     136 .. 0.59
   2 ?   -2.3   0.1       3.6   5.4e+03      97     121 ..     477     501 ..     441     504 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.3e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHH CS
        BTAD  64 alealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqae 114
                  l+a++  +  lGr+ ++++ +e++ +++P +E+l  q + A  r G+  +
  CDO68279.1  71 TLAAMMHVLRGLGRHMDMVTMYEDAYKQQPGNEELGTQTFFANVRIGNWKA 121
                 233344444466666666666666666666666666666666666666555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHTT-HHHHHHHHHH CS
        BTAD  97 rlhrqlmrAlarsGrqaeALevYer 121
                 + + +l+r ++ +G  + ALe Y++
  CDO68279.1 477 QIRLHLIRIYRLLGAPSLALEHYRS 501
                 5566788999999999999999997 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.1   0.00028      0.42     106     237 ..      29     162 ..       9     170 .. 0.75
   2 ?    2.7   0.1      0.04        60     208     249 ..     470     512 ..     436     517 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
      TPR_15 106 rfrsprlLssalellerakdydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrell 203
                 + +  +lL +al++l   +  ++++e l    e ++    + a l+a+  + r  g++ + +++y+ A + +p+++el  +  ++ +  g+ + ++++ 
  CDO68279.1  29 KKQPNNLLVKALKALALVRS-QKVEEALLLCDEvLASKPADDATLAAMMHVLRGLGRHMDMVTMYEDAYKQQPGNEELGTQTFFANVRIGNWKAAQQIA 126
                 55566677777776665554.44444444433314445588999************************************************9999999 PP

      TPR_15 204 kawkaraesdasLwgplaaAlllLgrpk..kALeyl 237
                  + +++ + d  L+    +A+l   +p+  +AL+ +
  CDO68279.1 127 TKMHKQFQDDHYLYWSVMSAMLQAHDPStpEALRTV 162
                 999999999999988888888877775422566655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.04
      TPR_15 208 araesdasLwgplaaAlllLgrpkkALeylrk.qakenrkdpl 249
                 ar++++ ++++ l   + lLg p+ ALe++r    k+ ++d l
  CDO68279.1 470 ARSKTSYQIRLHLIRIYRLLGAPSLALEHYRSiNVKQVQNDTL 512
                 344777888888999999*************989999999987 PP

>> RMI2  RecQ-mediated genome instability protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00022      0.32      42     106 ..     967    1038 ..     939    1048 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
        RMI2   42 vWlQGtvvevdaske..sllldDgtgvfvveglnelpktk.....kclkeGkYVmVvGvvqssspepvlkav 106 
                  v   + v++v+ +++    ll+Dgt ++ +++ ++          ++++eG YV V+G+++   ++  ++  
  CDO68279.1  967 VTAVAQVLSVQPQTTnyIYLLNDGTANMEARQWVDPNVDDdsasrEEVREGTYVRVLGSLKVFGNKRYITTT 1038
                  33345677777776666899*******8877766544444567789*************9877777666555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014       0.2       3      63 ..      15      74 ..      13     104 .. 0.84
   2 ?   -0.8   0.0       1.2   1.8e+03       4      27 ..     118     140 ..     109     148 .. 0.67
   3 ?   -1.4   0.0       1.9   2.8e+03      21      48 ..     180     207 ..     164     220 .. 0.66
   4 ?   -3.5   0.3       8.8   1.3e+04       7      49 ..     460     502 ..     458     514 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHH CS
      ANAPC3  3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfA 63
                +  k+Ai+ ++++l+++++++    l+Al+l ++++ ++A+ l+++  l+sk    + l+A
  CDO68279.1 15 GSNKSAILACNKVLKKQPNNLLVKALKALALVRSQKVEEALLLCDEV-LASKPADDATLAA 74
                56799*********7777777777778*****************999.6666666666666 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
                 -HHHHHHHHHHHH.HHH--HHHHH CS
      ANAPC3   4 nyknAiflaerllaaetespeday 27 
                 n+k A  +a +++ ++ +++  +y
  CDO68279.1 118 NWKAAQQIATKMH-KQFQDDHYLY 140
                 5566666666666.5555555555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
                 --HHHHHHHHHHHHHTT-HHHHHHHHHC CS
      ANAPC3  21 espedayllAlclylngqykrAyellrk 48 
                 ++++  +l+  +l ++g y++A+e +++
  CDO68279.1 180 YNADRFHLHLTVLKQLGLYDEAFEMVES 207
                 5555556666666677777777776665 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 8.8
                 HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   7 nAiflaerllaaetespedayllAlclylngqykrAyellrka 49 
                 nA  l+e + a+++ s++ ++ l   + l+g    A+e +r+ 
  CDO68279.1 460 NAAALLEYAIARSKTSYQIRLHLIRIYRLLGAPSLALEHYRSI 502
                 5666777777444444444444677888888888777777766 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00048      0.71     191     263 ..      25      97 ..      11     113 .. 0.83
   2 ?   -1.9   0.0       1.1   1.7e+03     102     125 ..     139     162 ..     108     164 .. 0.72
   3 ?   -2.5   0.1       1.8   2.7e+03      53     106 ..     854     911 ..     849     923 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00048
                 HHHHHHS---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHH CS
  Coatomer_E 191 qelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlk 263
                 + +  k +++ l+   kA + +  ++ eeA  l  e L +++ d  tL+ ++ +   lg+  + ++ +    k
  CDO68279.1  25 NKVLKKQPNNLLVKALKALALVRSQKVEEALLLCDEVLASKPADDATLAAMMHVLRGLGRHMDMVTMYEDAYK 97 
                 5566777888999999***************************************999999888877655555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHTT-HHHHHHHH CS
  Coatomer_E 102 evlrllaaivflkegdfddalkll 125
                   + +++a+++ ++ +  +al+++
  CDO68279.1 139 LYWSVMSAMLQAHDPSTPEALRTV 162
                 458899999999999999999875 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
                 HHHHHS-TTS-HHHH....HHHHHHHHHH-STTHHHHHHHHHHHHHS----S-HHHHH CS
  Coatomer_E  53 iviseIkesaatelq....Avrllaeylnspsrkeeilaelkeeladseiesnevlrl 106
                   i+eI+++a++ l     A+  +ae  ++ +r++e+++  k  + +s  +++ vl +
  CDO68279.1 854 HHIKEIRSKASSVLSeisgALISYAERETTAERRNEVVQACKPIIHESGLDHDFVLSV 911
                 5678887766554432222888999999999999999999998888887777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 7043.98
//
Query:       CDO68280.1  [L=83]
Description: hypothetical protein BN946_scf184799.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-20   70.8   0.6      9e-20   70.1   0.6    1.3  1  NCE101    Non-classical export protein 1


Domain annotation for each model (and alignments):
>> NCE101  Non-classical export protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.6     5e-24     9e-20       2      44 ..       5      49 ..       5      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 5e-24
      NCE101  2 LlsrflDPlLaifiGvaaYylyEk..rterpeghrLneLlkkkyn 44
                Llsr+lDP+L++f+Gv+aYylyE+  rt++p++ rL++Ll++ky 
  CDO68280.1  5 LLSRTLDPILGVFTGVLAYYLYEThpRTAMPDELRLKSLLRWKYT 49
                8*******************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 564.15
//
Query:       CDO68281.1  [L=237]
Description: hypothetical protein BN946_scf184799.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-28   98.4  16.6      2e-28   98.4  16.6    1.6  2  Ribosomal_L30_N  Ribosomal L30 N-terminal domain
    2.6e-18   65.7   2.6    2.6e-18   65.7   2.6    1.8  2  Ribosomal_L30    Ribosomal protein L30p/L7e
  ------ inclusion threshold ------
       0.12   12.2   1.1       0.88    9.4   0.1    2.3  2  Tipalpha         TNF-alpha-Inducing protein of Helicobacter


Domain annotation for each model (and alignments):
>> Ribosomal_L30_N  Ribosomal L30 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4  16.6   3.4e-32     2e-28       1      72 []      15      86 ..      15      86 .. 0.99
   2 ?   -3.7   0.0       2.5   1.5e+04      33      40 ..     151     158 ..     149     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 3.4e-32
  Ribosomal_L30_N  1 vPEsllKKrkrneklkakrakkaaakkkankkkrklifkRaekYvkEYrqkereeirlkReAkkaGnfyvpa 72
                     vPE+llKKrk+nek++++r+++a+a++ka k+krk+ifkRae+YvkEY +ke+ee+rlkR A+++G+fyvpa
       CDO68281.1 15 VPETLLKKRKQNEKAREERLAAAVAARKAAKAKRKVIFKRAESYVKEYLAKEKEEVRLKRVARASGDFYVPA 86
                     8**********************************************************************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.5
  Ribosomal_L30_N  33 krklifkR 40 
                       r+li+kR
       CDO68281.1 151 VRELIYKR 158
                      68999999 PP

>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   2.6   4.3e-22   2.6e-18       1      51 []      91     141 ..      91     141 .. 0.99
   2 ?   -2.6   0.0      0.88   5.3e+03      44      51 .]     148     155 ..     147     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 4.3e-22
                    EEEEE-S-STTS-HHHHHHHHHTT-SSTT.EEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30   1 lfVtrirsiigvppkvrktLqlLgLrkin.gtvvklntpsirGmLkkVkhlV 51 
                    lfV+rir+i+++ pk rk+LqlL+L +in g++vk ++++ + mL++V+++V
     CDO68281.1  91 LFVVRIRGINNIAPKPRKILQLLRLLQINnGVFVKVTKATQQ-MLRLVEPYV 141
                    7*****************************************.********9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.88
                    HHHCCCGE CS
  Ribosomal_L30  44 LkkVkhlV 51 
                    Lk+V++l+
     CDO68281.1 148 LKSVRELI 155
                    89***998 PP

>> Tipalpha  TNF-alpha-Inducing protein of Helicobacter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3     0.033     2e+02      95     117 ..      79     101 ..      20     117 .. 0.70
   2 ?    9.4   0.1   0.00015      0.88      72     119 ..     117     164 ..      94     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.033
                 EEEEEETTTTEEEEEEEEEEE-H CS
    Tipalpha  95 lGeyinpnneevfalvrvdGydk 117
                  G +  p + +v+ +vr++G ++
  CDO68281.1  79 SGDFYVPAEPKVLFVVRIRGINN 101
                 47788899999999999999876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00015
                 ---HHHHHHTHHHHHHHEEEEEEEEEEEETTTTEEEEEEEEEEE-HHH CS
    Tipalpha  72 kiddeifkqitqaiaasldkevrlGeyinpnneevfalvrvdGydker 119
                 +i++ +f+++t+a  + l  +     y +pn + v  l+  +Gy k  
  CDO68281.1 117 QINNGVFVKVTKATQQMLRLVEPYVTYGEPNLKSVRELIYKRGYGKVD 164
                 68999***************************************8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1190  (0.0663729); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1751.73
//
Query:       CDO68282.1  [L=352]
Description: hypothetical protein BN946_scf184799.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   12.8   0.0        3.9    7.8   0.0    2.6  2  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.013   2.3e+02       3      13 ..     258     268 ..     257     272 .. 0.84
   2 ?    7.8   0.0   0.00021       3.9       5      22 ..     298     315 ..     296     316 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.013
       LRR_6   3 thLteLdLsgN 13 
                 + L+ +dLs+N
  CDO68282.1 258 PLLEVVDLSYN 268
                 6799******* PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00021
       LRR_6   5 LteLdLsgNdIgDeGaea 22 
                 Lt L L+g+d+g + +++
  CDO68282.1 298 LTVLGLRGCDVGPDIVSK 315
                 9************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2917.02
//
Query:       CDO68283.1  [L=350]
Description: hypothetical protein BN946_scf184799.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-09   36.8   0.0    5.1e-09   36.2   0.0    1.2  1  CLTH      CTLH/CRA C-terminal to LisH motif domain
    0.00075   19.4   0.0     0.0016   18.3   0.0    1.6  1  LisH      LisH


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   5.7e-13   5.1e-09       7     137 ..      71     268 ..      69     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 5.7e-13
        CLTH   7 kIiklilegdlseaiewinenkpellesn.......................snLeFkLkllqfielirg........kt................... 55 
                 +I++ il+g+++ a e  n+++p++l++                         +L  +L+ + f+e  r          +                   
  CDO68283.1  71 QIRNHILSGRIDDATELLNKHFPTVLSEPmddgsepsssrkfqyipatstnpTHLALNLRIQAFVEAARTiplsfrppGSdeslahppllsaaanssss 169
                 7*************************99556677788889999999999999*****************666655555005556666666666666677 PP

        CLTH  56 ..............kdieealeyare......nlefend..ehlkelekamsLLafsdpeskelssplknlldpsrrekvakefnsailkllglskesp 132
                               +   ++l+ a+       +l +  d  ++l el+++ + La+  pe     spl  ++ + rre va+++ sail   + ++ s 
  CDO68283.1 170 dggedvnmseseaeRANVRLLHLAQSlysevnRLPPS-DraTYLVELSQVGGILAYTVPER----SPLDIYMTQGRREAVADQVDSAILYRAKRPTISR 263
                 7776666666655444667777777766555445333.147*****************998....79**********************9999998888 PP

        CLTH 133 Leill 137
                 +e++ 
  CDO68283.1 264 IELYA 268
                 77775 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.8e-07    0.0016       1      26 [.       6      31 ..       6      31 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-07
                HHHHHHHHHHHHHCT-HHHHHHHHHH CS
        LisH  1 eeLNrLIydYLvkeGyeetAeaFekE 26
                ++L  L++dYL+++ ++ +A+aF++E
  CDO68283.1  6 QDLQDLVLDYLIHNCHTAAARAFMNE 31
                68888*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2404.21
//
Query:       CDO68284.1  [L=517]
Description: hypothetical protein BN946_scf184799.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-38  130.3   8.8    4.6e-19   67.9   0.2    2.4  2  PQ-loop   PQ loop repeat
  ------ inclusion threshold ------
      0.028   14.4   0.3      0.087   12.9   0.3    1.7  1  MtN3_slv  Sugar efflux transporter for intercellular exchange


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.2   5.1e-23   4.6e-19       1      60 [.       7      66 ..       7      67 .. 0.96
   2 !   64.8   3.9   4.9e-22   4.4e-18       1      56 [.     370     425 ..     370     429 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 5.1e-23
     PQ-loop  1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpps 60
                +se+lgy+s+++wl +++PQ+i+N +r+S++Gl + fl+ wllGd ++ll++il++++p+
  CDO68284.1  7 FSELLGYTSIACWLGAQFPQVIENARRQSVDGLALPFLMNWLLGDATNLLGCILTQQLPF 66
                5899***************************************************99886 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 4.9e-22
     PQ-loop   1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilng 56 
                 ++ i+ +i+++l+l s++PQi+kNy rkS+eGlSi+ +++++lG+++++++++++ 
  CDO68284.1 370 IGRISAWICTTLYLTSRLPQIWKNYVRKSVEGLSIYLFIFAFLGNFFYVASILTSP 425
                 57899***********************************************9976 PP

>> MtN3_slv  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   9.8e-06     0.087       7      50 ..     375     418 ..     369     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.8e-06
    MtN3_slv   7 cvvftvavFlsPlsilrkiikkksveelsfllflagllsallWl 50 
                 + + t +   s l++++k + +ksve+ls+ lf++++l++++++
  CDO68284.1 375 AWICTTLYLTSRLPQIWKNYVRKSVEGLSIYLFIFAFLGNFFYV 418
                 55666667778999**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3633.58
//
Query:       CDO68285.1  [L=706]
Description: hypothetical protein BN946_scf184799.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-47  162.3   0.0    1.8e-47  161.6   0.0    1.3  1  AAA_12           AAA domain
    6.4e-42  144.1   0.6    5.7e-37  127.9   0.2    2.5  2  AAA_11           AAA domain
    0.00062   19.6   0.0      0.047   13.4   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0012   18.6   0.2       0.09   12.5   0.3    2.4  2  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.0     4e-51   1.8e-47       1     182 [.     508     697 ..     508     698 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 4e-51
      AAA_12   1 lerSlferllkke.kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele.........aqealeepleplvfidvekseeekekke....ks 85 
                 le++lferl k++ +  + +L++qYRmh +I+ fpsk +Y gkL++++sv+++ l+         ++++ e   +p+vf+d+ + e  ++ +      s
  CDO68285.1 508 LETTLFERLEKMYgPGIKRMLTVQYRMHAQIAAFPSKVMYYGKLESHDSVASHLLRdlpntkadsEEDEKEILGTPVVFYDTAGCEYFERVEGdndeGS 606
                 579*********9999********************************9999999999999999877888888999******7766555443345569* PP

      AAA_12  86 yiNeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlN 182
                  +Ne+Ea++v   v++l ++g+    ++i+vitpY+aqv+ll + l+     +    +e++tvdg+QGrek+++i+slVRsn+k+e+gflkd+rrlN
  CDO68285.1 607 RCNENEASVVKTWVDQLASAGVFP--SQIAVITPYQAQVTLLTSLLRPVYGAE----LEIGTVDGMQGREKEAVIISLVRSNDKREVGFLKDKRRLN 697
                 **********************99..*********************877776....9**************************************9 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.7e-06     0.026       2      26 ..     223     247 ..     222     260 .. 0.94
   2 !  127.9   0.2   1.3e-40   5.7e-37      85     260 ..     259     418 ..     248     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.7e-06
      AAA_11   2 lndsqreaiksalseseitliqGPP 26 
                 ln+sq+eai++a++++e+++i+GPP
  CDO68285.1 223 LNASQKEAIRFAMESPEVACIHGPP 247
                 8***********************9 PP

  == domain 2  score: 127.9 bits;  conditional E-value: 1.3e-40
      AAA_11  85 kykpkivRvgnee.eriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskele 182
                  +k+k+ Rvg+++   ++++v + +le k +++     +aqlak++++ele+  ++l  +           +  k k+ + +er+k+++e++ l+ke++
  CDO68285.1 259 GSKLKVTRVGHPArVMAQDDVIDATLEVKASHSD----QAQLAKDVKAELEAALDTLAGKG----------KGAKGKAPRGAERKKMWEEVRALRKEYR 343
                 5789*********545566666666666555555....568************99995444..........445788999999**************** PP

      AAA_11 183 eaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvis 260
                 ++e  + e+vl+++++vl+T++++g+++l+++  +fdvviIDEA+qa+E+ +++P++++ +k++L+GDp QLp+t+is
  CDO68285.1 344 QREGGVVESVLKDSQVVLATCHSSGRRQLRNQ--NFDVVIIDEATQALEAVCWVPILKA-QKLILAGDPMQLPPTIIS 418
                 ********************************..9*********************999.*****************9 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     1e-05     0.047      58     101 ..     372     413 ..     341     429 .. 0.84
   2 ?    3.5   0.0     0.011        50     160     209 ..     631     684 ..     602     693 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
  Viral_helicase1  58 vkstkgkililDEylllhaGyilllaalskaklvilfGDplQip 101
                      ++ ++++++i+DE++++  ++ ++   + ka+ +il GDp Q p
       CDO68285.1 372 LRNQNFDVVIIDEATQALEAVCWV--PILKAQKLILAGDPMQLP 413
                      334679***********9888888..8899999*********87 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.011
  Viral_helicase1 160 pkgqekvlvyltftqalkealgvr......evttvhevqGltfdkVtlvllketdl 209
                      ++   +v+++ ++   l+++l ++      e+ tv + qG + + V++ l +++d+
       CDO68285.1 631 SQI--AVITPYQAQVTLLTSLLRPvygaelEIGTVDGMQGREKEAVIISLVRSNDK 684
                      333..47888888888888888889999999****************988877664 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.012        52       2      27 ..     223     247 ..     222     247 .. 0.92
   2 !   12.5   0.3     2e-05      0.09      30     130 ..     315     414 ..     288     417 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
      AAA_30   2 lnaeQaaavealltsgdrvavltGpA 27 
                 lna+Q++a++ +++s++ va+++Gp+
  CDO68285.1 223 LNASQKEAIRFAMESPE-VACIHGPP 247
                 99********9999997.******97 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2e-05
      AAA_30  30 GKttalkalreaweaaggrviglAptgkaAkvLaeelgi........eastiakllkrlk.........grarlepg..tllivDEagmvdtkqlaall 109
                 GK                   g Ap g+  k++ ee+ +        e+  ++++lk  +         gr +l+++  +++i+DEa  +    l+a+ 
  CDO68285.1 315 GKGAK----------------GKAPRGAERKKMWEEVRAlrkeyrqrEGGVVESVLKDSQvvlatchssGRRQLRNQnfDVVIIDEATQA----LEAVC 393
                 33333................4444444444444433322333333344444444444445555555563344444437*******9655....55555 PP

      AAA_30 110 kaaekagakvilvGDerQlas 130
                      +  k+il+GD+ Ql++
  CDO68285.1 394 WVPILKAQKLILAGDPMQLPP 414
                 555555688**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4886.50
//
Query:       CDO68286.1  [L=240]
Description: hypothetical protein BN946_scf184799.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-16   60.3   0.4    8.2e-14   51.8   0.1    2.5  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    2.3e-09   37.6   2.2    7.6e-09   35.9   0.2    2.4  3  PEMT        Phospholipid methyltransferase
    5.2e-08   32.1   0.1    7.1e-08   31.6   0.1    1.1  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   1.4e-17   8.2e-14       4      65 ..     110     171 ..     108     179 .. 0.91
   2 !    6.4   0.0     0.002        12      55      92 ..     179     216 ..     173     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.4e-17
        ICMT   4 lvllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcn 65 
                 l++++ ++r+++ + lG+++t ++ ++++hklv++g+y+++rHP+Y+++ ++ l++ l l+ 
  CDO68286.1 110 LAIAGGLIRICCHHALGKFFTWQLSVQDGHKLVTAGPYAIVRHPSYVGWALITLGMPLALFT 171
                 5789999*****************************************99999998666655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.002
        ICMT  55 lelatllLlcnakltalvllalvalllfvRikeEekaL 92 
                   la+  L  +    a++ +a+ +++l+ R+ +E++ L
  CDO68286.1 179 SGLAGSRLYRSVAGAAVLYMAFLTMRLLRRVPKEDEVL 216
                 55667777777777899999***************988 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.5     9e+03      66      80 ..      52      66 ..      40      75 .. 0.43
   2 !   35.9   0.2   1.3e-12   7.6e-09       3      70 ..     104     169 ..     102     177 .. 0.91
   3 ?    0.7   0.0      0.11   6.8e+02      65     104 ..     183     222 ..     170     224 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
        PEMT 66 laLitgsaaglllal 80
                +    + +a+ +la+
  CDO68286.1 52 TCVCAWRVAAGTLAI 66
                333333333333333 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 1.3e-12
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLit 70 
                 +++G +l ++g l+++  ++alg+f t    +  ++ +klvt+G+Y ++++P yvg  l+ lG+ L+ 
  CDO68286.1 104 FLAGSALAIAGGLIRICCHHALGKFFTWQLSV--QDGHKLVTAGPYAIVRHPSYVGWALITLGMPLAL 169
                 67899*********************998877..9999**************************9975 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.11
        PEMT  65 GlaLitgsaag.lllallvllvylialkfvEephlakiYgk 104
                 G  L+  s+ag  +l + +l++ l+ +   E+++l+ ++g+
  CDO68286.1 183 GSRLYR-SVAGaAVLYMAFLTMRLLRRVPKEDEVLSTHFGD 222
                 555554.4444255666666666666666799999999987 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   1.2e-11   7.1e-08     343     432 .]     133     240 .]     125     240 .] 0.91

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.2e-11
  ERG4_ERG24 343 iqtktGskLlvsGWyglarkinYlgDwlqslswsLatgfq..................svlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkv 423
                 +  + G+kL++ G y+++r++ Y+g  l++l   La                         +  y+ +  + L+ R  +++e  +  +G++w  + k+ 
  CDO68286.1 133 LSVQDGHKLVTAGPYAIVRHPSYVGWALITLGMPLALFTPgsyfvesglagsrlyrsvAGAAVLYMAFLTMRLLRRVPKEDEVLSTHFGDQWRAWAKTT 231
                 67789********************99999988887655577999***********886667889********************************** PP

  ERG4_ERG24 424 pykiipyvy 432
                 pyk++p++y
  CDO68286.1 232 PYKLVPFIY 240
                 *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1919.95
//
Query:       CDO68287.1  [L=254]
Description: hypothetical protein BN946_scf184799.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-14   52.3   0.1    1.5e-12   47.8   0.0    2.4  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    4.9e-09   36.5   0.4    2.8e-08   34.1   0.2    2.1  2  PEMT        Phospholipid methyltransferase
    0.00011   21.2   0.0    0.00048   19.0   0.0    1.8  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   2.5e-16   1.5e-12       6      66 ..     126     186 ..     122     192 .. 0.90
   2 ?    1.8   0.0     0.053   3.2e+02      77      93 ..     215     231 ..     203     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.5e-16
        ICMT   6 llaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcna 66 
                  ++ +lr+ + +tlG+++  + ++++dh+l+++g+y+y+rHP+Y++ v++ +++ l l+ +
  CDO68287.1 126 TAGGLLRTSCYRTLGRFFKWQSTTEDDHELITTGPYAYVRHPSYTALVWVTIGATLTLLGP 186
                 567899**********************************************987766655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.053
        ICMT  77 valllfvRikeEekaLa 93 
                 v++ l+ Ri eEe+ L+
  CDO68287.1 215 VTCALILRIGEEEEELQ 231
                 5678899*******997 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.2   4.7e-12   2.8e-08       3      69 ..     118     182 ..     116     191 .. 0.92
   2 ?   -0.2   0.0      0.22   1.3e+03      79     104 ..     211     236 ..     185     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 4.7e-12
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLi 69 
                 +++G + + +g ll++s +++lg+f     +   e++++l+t+G+Y y+++P y++ + + +G++L 
  CDO68287.1 118 FLAGSVFMTAGGLLRTSCYRTLGRFFKWQSTT--EDDHELITTGPYAYVRHPSYTALVWVTIGATLT 182
                 567999******************99888877..9999*************************9996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
        PEMT  79 allvllvylialkfvEephlakiYgk 104
                  l  +++ li+++  Ee+ l+k++g+
  CDO68287.1 211 WLGTVTCALILRIGEEEEELQKKFGA 236
                 44445566666666899999999986 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     8e-08   0.00048     345     432 .]     149     254 .]     143     254 .] 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8e-08
  ERG4_ERG24 345 tktGskLlvsGWyglarkinYlgDwlqslswsLatgfq....................svlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkv 423
                 t+  ++L+++G y+++r++ Y++ + +++  +L+                          l+ +      + L+ R   +ee+ +kk+G++w  +  + 
  CDO68287.1 149 TEDDHELITTGPYAYVRHPSYTALVWVTIGATLTLL-GpgsyayesgllgtgwgkaaaAALSGWLG-TVTCALILRIGEEEEELQKKFGANWRAWAART 245
                 666789****************97776666555432.246778999999*****999855554433.35788999************************ PP

  ERG4_ERG24 424 pykiipyvy 432
                 pyk++p+v+
  CDO68287.1 246 PYKMVPFVF 254
                 *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2047.71
//
Query:       CDO68288.1  [L=401]
Description: hypothetical protein BN946_scf184799.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-07   29.4   0.8    9.3e-07   28.4   0.8    1.6  1  GYF       GYF domain


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.8   5.2e-11   9.3e-07       2      37 ..     345     389 ..     344     399 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.2e-11
         GYF   2 eYk......dpqgevqGPFsseeMqkWykagYFkdg...llvrrv 37 
                 eYk       + ++v GPFs  eM++Wy+a YF ++     vr+v
  CDO68288.1 345 EYKwavpeaGDAEQVFGPFSEDEMKAWYSAAYFGPSgekIKVRKV 389
                 67777776645789*******************986222556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1552  (0.0865637); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 2970.47
//
Query:       CDO68289.1  [L=795]
Description: hypothetical protein BN946_scf184799.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-48  163.6   0.2    5.6e-31  107.5   0.0    2.3  2  SNF2_N         SNF2 family N-terminal domain
    3.1e-46  157.8   8.6    5.8e-46  156.9   8.6    1.4  1  Rad54_N        Rad54 N terminal
    6.9e-18   65.0   0.0    2.2e-17   63.4   0.0    1.9  2  Helicase_C     Helicase conserved C-terminal domain
    2.2e-07   30.4   1.1    5.4e-07   29.1   0.0    2.1  2  HDA2-3         Class II histone deacetylase complex subunits 
    4.1e-06   26.2   0.0      8e-06   25.2   0.0    1.4  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    0.00048   20.2   0.0       0.19   11.7   0.0    2.8  1  ResIII         Type III restriction enzyme, res subunit
      0.005   17.1   0.0       0.04   14.2   0.0    2.5  2  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.011   16.4   3.5      0.012   16.3   0.2    2.4  2  U1snRNP70_N    U1 small nuclear ribonucleoprotein of 70kDa MW
        9.2    6.8   8.2         22    5.5   2.4    2.6  2  DUF4598        Domain of unknown function (DUF4598)


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   5.4e-18   1.1e-14      37     140 ..     235     327 ..     165     337 .. 0.76
   2 !  107.5   0.0   2.8e-34   5.6e-31     181     349 ..     346     513 ..     339     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 5.4e-18
                 ............HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHH.HH-TTS-EEE--SSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
      SNF2_N  37 vnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneie.rhvsssalrvlvyggqkk 134
                 +  +tg+v       ++++ G+i+aDemGLGKT+q++al++++ +++ +       ++  +  +i +P+sl+++W ne++ +++ ++a+  l+ +g+ +
  CDO68289.1 235 YRCTTGMV-------VENQYGCIMADEMGLGKTLQCIALMWTLLKQSPH-----PGKPTIEKCIIACPSSLVKNWANELAvKWLGKDAISALAIDGKGS 321
                 44454444.......45778*********************66553322.....245788889***************975999******999999875 PP

                 ------ CS
                 xxxxxx RF
      SNF2_N 135 mkkknt 140
                 + ++ +
  CDO68289.1 322 KAEMLE 327
                 444433 PP

  == domain 2  score: 107.5 bits;  conditional E-value: 2.8e-34
                 EEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHH............HHHHHHHHHHHTT-STT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxx RF
      SNF2_N 181 vvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpie............aqaekgrsrLlqllqrl 267
                 + +DEgh+lkns+s + +a++ L+ ++r+il+GTPiqn+l+++++Ll+f +++ +g+k+ f+k +++ i             a+ ek+ ++L +l+q++
  CDO68289.1 346 LLCDEGHRLKNSESLTFQALNGLNVKRRVILSGTPIQNDLSEYFSLLNFANPNFLGSKNDFRKNFENAIIrgrdadasdadkAECEKKLKELGNLVQKF 444
                 689*****************************************************************999*********9999999************ PP

                 EE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 268 mlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpql 349
                 ++rr+++ ++k+lP k e+++f+kls+ ++++Y          ++++  +++    ++s     + l+ +  l++ cnhp+l
  CDO68289.1 445 IIRRTNDLLSKYLPVKYEQVVFCKLSDFQLSLYR--------LFISSPEIQALLRGTDS-----QPLKAINILKKLCNHPEL 513
                 **********************************........33333333333333334.....48999999*******987 PP

>> Rad54_N  Rad54 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   8.6   2.9e-49   5.8e-46       3     180 ..      18     200 ..      16     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 2.9e-49
     Rad54_N   3 dslerLtkpFkvPasaastreserpaRkrrkvvsYagadgeeeeeesdkkeee.keee....krkdalaarklnkfpvfrlkdketvlkksFsvPlkkk 96 
                 ++++r++kpFk+P+      ++e+p+Rkr++v sY++a+ e++++ s+++    k+++    + ++    ++++++pvf++k+ + +l ++Fs+P +++
  CDO68289.1  18 QESSRVNKPFKPPT---LAVAREQPQRKRKRV-SYKDAQRESDDSGSENDGAPkKKKKsgkdAGFERPLDNNIQHYPVFKPKPFD-QLPRRFSIPQMRN 111
                 57899********9...678999*********.*****9998888766655444444433223333334445557********87.88*********** PP

     Rad54_N  97 kqkeveelr.ppptLGtrkkvilvprpLhDPtdefAIVLYDPTvDdkekeeeeeeeekeeeeeekeekkkkk....klphKsLaeiLGi 180
                 k+++v+++  ++++LG+r+ ++++prpLhDP++++AIVLYDPT+Dd+e++ee++e+ekeee+e++++++++k     +phKsL+e+LG 
  CDO68289.1 112 KDGQVIPTVqTNIALGIRPLANIIPRPLHDPMEDHAIVLYDPTIDDRETDEERREREKEEEKERAQKEAQEKcaglYNPHKSLKELLGE 200
                 ******9999******************************************************999998844566***********96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.3   1.1e+04      32      59 ..     303     329 ..     283     335 .. 0.64
   2 !   63.4   0.0   1.1e-20   2.2e-17       6     110 ..     558     667 ..     553     668 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.3
                 HHHHHHHTTSTEEEESTTSTHHHHHHHH CS
  Helicase_C  32 vklllekkgikvavlhgelpqnereeil 59 
                 vk+l  k +i++++++g+ ++ e +e +
  CDO68289.1 303 VKWL-GKDAISALAIDGKGSKAEMLEKV 329
                 5666.56679999999998888877655 PP

  == domain 2  score: 63.4 bits;  conditional E-value: 1.1e-20
                 HHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   6 llell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlprnvts 99 
                 l ++l   ++e ++ki++++n++++l+ ++ ll++k++ + +l+g+++ n+r++ ++qfn  +g+   +L+++++++ Gi++ ++n +i fd+++n++ 
  CDO68289.1 558 LERFLhrIHTETNDKIVLISNYTQTLDLFEKLLRSKKYGYFRLDGTMTINKRQKLVDQFNdpNGKEFiFLLSSKAGGCGINLIGANRLILFDPDWNPAA 656
                 455555558999**************99777778889***********************88565555******************************* PP

                 HHHHHTTSSST CS
  Helicase_C 100 yiqriGRtgRa 110
                  +q+  R++R 
  CDO68289.1 657 DQQALARVWRD 667
                 *********96 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.8       4.3   8.6e+03     148     178 ..     162     196 ..     152     211 .. 0.45
   2 !   29.1   0.0   2.7e-10   5.4e-07      88     247 ..     550     692 ..     542     708 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 4.3
                 -S---S-........................-SEEEE CS
      HDA2-3 148 dekkkkskdtkkns.rktkekl.....kkkihsltih 178
                 +e ++++k+++k+  +  ke +       + h++ ++
  CDO68289.1 162 EERREREKEEEKERaQ--KEAQekcagLYNPHKSLKE 196
                 3444444333333321..1111123433444444444 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 2.7e-10
                 HT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS--- CS
      HDA2-3  88 etSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrql 186
                   SgKF vl++ +  i  ++     +++++++  ++ldL E ll +kk  + r++g++  ++ +k             ++++     +++++l +++  
  CDO68289.1 550 AWSGKFLVLERFLHRIHTET---NDKIVLISNYTQTLDLFEKLLRSKKYGYFRLDGTMTINKRQKLV-----------DQFND-PNGKEFIFLLSSKAG 633
                 57*************99988...568************************************99999...........33322.233455555555544 PP

                 TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHT CS
      HDA2-3 187 tkdksllenikfdliiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfk 247
                        + i ++ +i fD++ +++ ++  + r  +  +k+++ ++r +++ +ie    +++
  CDO68289.1 634 ---GCGINLIGANRLILFDPDWNPAADQQALARVWRDgQKKECFVYRFISTGTIEEKIFQRQ 692
                 ...34466677788999********99999999755414555************98777776 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     4e-09     8e-06      45     177 ..     554     688 ..     540     716 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4e-09
  ERCC3_RAD25_C  45 kfrace.fLikyhekrgDkiivfsDnvfaLkeyakklk.kpy....iyGetseaerlkilqkfkknpkvntifl..skvgDtsiDlPeanvliqis 132
                    kf ++e fL ++h + +Dki++ s+   +L  + k l+ k+y    + G+++ ++r+k++++f+  +  + ifl  sk g   i+l  an li  +
     CDO68289.1 554 KFLVLErFLHRIHTETNDKIVLISNYTQTLDLFEKLLRsKKYgyfrLDGTMTINKRQKLVDQFNDPNGKEFIFLlsSKAGGCGINLIGANRLILFD 649
                    55555439*******************999999888862333334488****************9999999998789*****************99 PP

  ERCC3_RAD25_C 133 shfgsrrqeaqrlGriLrakkksneeefnaffYsLvskDtkemay 177
                     +      + q l r+ r  +k     ++ f Y  +s+ t e + 
     CDO68289.1 650 PDWNPA-ADQQALARVWRDGQK-----KECFVYRFISTGTIEEKI 688
                    988764.56799*****98777.....689*******99977543 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.4e-05      0.19       3     169 ..     222     380 ..     220     382 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.4e-05
                 EE-HHHHHHHHHHT.........TTSEEEEEESTTSTHHHHHHHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS CS
      ResIII   3 elreyQeeaienlleklks...krdkrglikmaTGtGKTlvaaklierllkkgkee......kflflvprkslleqtleefkkflseaykeigkkvsgd 92 
                  lr++Q e ++ l    +    +++   +++ + G GKTl +++l++ llk+ +        k+++ +p  sl++ + +e++     +++     ++g+
  CDO68289.1 222 VLRPHQVEGVKFLYRCTTGmvvENQYGCIMADEMGLGKTLQCIALMWTLLKQSPHPgkptieKCIIACP-SSLVKNWANELAVKWLGKDAISALAIDGK 319
                 578888888877775555566577777778889999****99999999999988777888855555555.45666666665443333333333344444 PP

                 -B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS- CS
      ResIII  93 kkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATp 169
                 + ka          +++++ +  a+             ++  ++++DE Hrl+ ++  ++++ l+ ++ + ++ l++Tp
  CDO68289.1 320 GSKA---------EMLEKVARWVASC--------GRNVSQPGLLLCDEGHRLKNSEslTFQA-LNGLNVKRRVILSGTP 380
                 4444.........1122222222222........2333455566666666666654334444.5555556666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-05      0.04      14     131 ..     255     380 ..     246     385 .. 0.69
   2 ?   -2.1   0.1       2.2   4.4e+03      82     116 ..     689     722 ..     687     731 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
      AAA_22  14 sGtGKTtllrrlleqldeeakaee.........erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav....ielliiDE 99 
                  G GKT+ +  l+ +l +++ +           ++p+ +  + +++   k l ++  +al  ++k+   s+ e+le++++ + ++++    ++ll+ DE
  CDO68289.1 255 MGLGKTLQCIALMWTLLKQSPHPGkptiekciiACPSSLVKNWANELAVKWLGKDAISALAIDGKG---SKAEMLEKVARWVASCGRnvsqPGLLLCDE 350
                 588999988888888876555555655554444444444444444445666666667777776777...****************************** PP

      AAA_22 100 aqhlr.s....eealeeLrsllnlsrkgvqliLvGtp 131
                  ++l  s     +al+ L    n    + ++iL Gtp
  CDO68289.1 351 GHRLKnSesltFQALNGL----N---VKRRVILSGTP 380
                 ****75233446666655....3...44455555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
      AAA_22  82 leqalraravielliiDEaqhlrseealeeLrsll 116
                 ++++++++a  +  ++DE +   ++  l  Lr+l+
  CDO68289.1 689 FQRQANKQAL-SSAVVDEKEDAERHFSLDALRKLF 722
                 6788889999.999999999875466666666554 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.79   1.6e+03      36      73 ..       7      45 ..       3      84 .. 0.60
   2 ?   16.3   0.2   5.9e-06     0.012      55      92 ..     154     192 ..     115     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.79
  U1snRNP70_N 36 itGvaaflselke.deeeqeppektetkeekkererkek 73
                 +t+  +++++++e ++ +++++++t + + ++ ++++++
   CDO68289.1  7 VTPDGKLVDRFQEsSRVNKPFKPPTLAVAREQPQRKRKR 45
                 566667788887753334444444444433332222222 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5.9e-06
  U1snRNP70_N  55 ppektetkeekkererkekkekkeekleealee.ydPke 92 
                  +    et ee++ere++e+ke+ +++++e+ +  y+P++
   CDO68289.1 154 TIDDRETDEERREREKEEEKERAQKEAQEKCAGlYNPHK 192
                  5556899***********************9988**996 PP

>> DUF4598  Domain of unknown function (DUF4598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.043        86      50      90 ..      32      76 ..      31      91 .. 0.71
   2 ?    5.5   2.4     0.011        22      61     106 ..     158     208 ..     143     212 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.043
     DUF4598 50 LGvleekrdee....sesdsdsssddedsesdekeesakkekesn 90
                L v+ e+ +++    s +d +++sdd++se+d + +++kk+  ++
  CDO68289.1 32 LAVAREQPQRKrkrvSYKDAQRESDDSGSENDGAPKKKKKSGKDA 76
                567777666656667888899999999999999888877774444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
     DUF4598  61 sesdsdsssddedsesdekeesakke.....kesnvldkllgkkskskkkp 106
                  e+d+++ + ++++e++ ++++a+++     + ++ l++llg+ +++kkk+
  CDO68289.1 158 RETDEERREREKEEEKERAQKEAQEKcaglyNPHKSLKELLGEGQDKKKKT 208
                 23333333333333333333333333578889999*******999998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1254  (0.0699426); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 5064.83
//
Query:       CDO68290.1  [L=734]
Description: hypothetical protein BN946_scf184799.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-09   36.6   0.7    5.5e-09   35.8   0.7    1.4  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.7   3.1e-13   5.5e-09       1      54 []       8      63 ..       8      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.1e-13
                EEEEEEEEEEEETTEEC..EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo  1 yeVerIidhrtdkdgle..leYlVKWkglpysentWEpeenlekcfqelideFkkr 54
                y+Ve I+  ++  ++++    Y VKWk++  +entWEp e  +  ++++i +F++r
  CDO68290.1  8 YVVESIVRAKVAAKRGKkyWLYSVKWKDYGLDENTWEPVESFAGGSEHFISAFWDR 63
                79*****9997777777699******************99999999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4790.14
//
Query:       CDO68291.1  [L=964]
Description: hypothetical protein BN946_scf184799.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-14   52.1   0.0    8.2e-14   51.2   0.0    1.5  1  Tudor_3       DNA repair protein Crb2 Tudor domain
    5.1e-09   36.2   0.3    1.4e-08   34.7   0.0    1.9  2  DUF4537       Domain of unknown function (DUF4537)
    6.8e-06   26.4   0.1    0.00046   20.5   0.0    2.9  2  BRCT          BRCA1 C Terminus (BRCT) domain
    1.4e-05   25.0   0.0    2.9e-05   24.0   0.0    1.5  1  53-BP1_Tudor  Tumour suppressor p53-binding protein-1 Tudor
    0.00019   21.0   0.0    0.00042   20.0   0.0    1.5  1  TUDOR_5       Histone methyltransferase Tudor domain 1
     0.0043   17.4   0.0        1.6    9.2   0.0    2.7  2  BRCT_2        BRCT domain, a BRCA1 C-terminus domain
  ------ inclusion threshold ------
      0.025   14.7   0.0       0.15   12.1   0.0    2.3  2  DUF1325       SGF29 tudor-like domain
      0.028   14.5   0.1        8.5    6.5   0.0    2.6  2  BRCT_3        BRCA1 C Terminus (BRCT) domain
       0.16   11.9   0.0         19    5.3   0.0    2.5  2  PTCB-BRCT     twin BRCT domain


Domain annotation for each model (and alignments):
>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   4.1e-17   8.2e-14       2      52 .]     576     623 ..     575     623 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.1e-17
                 GGEEEEE-SSSS--EEEEEEEEEEE-SSSEEEEEETTS-EEEEETTSEEES CS
     Tudor_3   2 pnrVfAlfkGkkraYYPAtclgvsssgsqrykVrFdDgtpeevdskqvrrL 52 
                 ++rVfAl+k ++ +YY +t++++++ g  +y ++FdDg+ ++v+ k++r++
  CDO68291.1 576 ATRVFALWK-QDGHYYSGTVHSQVELG--KYDIHFDDGDSSQVELKHMRAC 623
                 58*******.9****************..9*******************97 PP

>> DUF4537  Domain of unknown function (DUF4537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   7.2e-12   1.4e-08       2      60 ..     577     636 ..     576     676 .. 0.73
   2 ?   -2.7   0.1       2.8   5.6e+03      30      58 ..     907     936 ..     899     941 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 7.2e-12
     DUF4537   2 qkVlaRreeDGfYyrgtvkkrlngrqylvefeaeetqeveerdiialedak.ehslkvgD 60 
                 ++V+a +++DG+Yy+gtv+++++ ++y ++f++ + ++ve +++ a+   + +++l  g+
  CDO68291.1 577 TRVFALWKQDGHYYSGTVHSQVELGKYDIHFDDGDSSQVELKHMRACRLRQgDNVLLQGA 636
                 69*************************************999998887666555554443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
     DUF4537  30 vefeaeetqeveerdiialedak.ehslkv 58 
                 v +e +   +++e+d+i + d++ +++l v
  CDO68291.1 907 VTDERHASHDIREYDYIVVRDKQeCKRLSV 936
                 455667777888888888888876777765 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.3e-07   0.00046       8      77 ..     709     807 ..     704     809 .. 0.81
   2 ?    2.1   0.2      0.13   2.6e+02      68      79 .]     939     950 ..     936     950 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.3e-07
                 TEEEEEEESTSSHHHHHHHHHHHHTTCEE..............................ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHH CS
        BRCT   8 gckfvitgvldnftrdeleelikehGGkv..............................ttevskktthlvvgepesrslkylealklnipivheewll 76 
                 g+++ +  ++++ +r +l+  i+ +GG v                              +++ + +  +lv +++ s + kyl al+l+ip+++ ew+ 
  CDO68291.1 709 GLVITFSPKYEEKERASLNAEIRRNGGVVlddwtslfamdgtiaqkgnrwclkaddikwSDRKDVDRAFLVSDDY-SHKPKYLLALALGIPCLSVEWVR 806
                 566777778899999999999********7777777777777777777777777777776666667777777777.88999****************98 PP

                 H CS
        BRCT  77 d 77 
                 +
  CDO68291.1 807 Q 807
                 6 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
                 EEEETHHHHHHH CS
        BRCT  68 pivheewlldci 79 
                 ++v+ +w++dc+
  CDO68291.1 939 HCVDMDWVKDCL 950
                 79*********7 PP

>> 53-BP1_Tudor  Tumour suppressor p53-binding protein-1 Tudor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.4e-08   2.9e-05       7      53 ..     577     623 ..     571     666 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.4e-08
                   -EEEEESTTT--EEEEEEEEEECTTEEEEEETTS-EEEEEGGGEESS CS
  53-BP1_Tudor   7 lrvvakwssngyfysgkitkdvgegkykllfddgyecevlgkdillc 53 
                    rv a w  +g++ysg +  +v  gky ++fddg   +v  k +  c
    CDO68291.1 577 TRVFALWKQDGHYYSGTVHSQVELGKYDIHFDDGDSSQVELKHMRAC 623
                   69***********************************9999988777 PP

>> TUDOR_5  Histone methyltransferase Tudor domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.1e-07   0.00042       5      52 ..     577     618 ..     575     619 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.1e-07
     TUDOR_5   5 tRviAkykdekkkskyyaGiiAEppkktNryRYlifFDDGyaqyvshe 52 
                 tRv A +k++    +yy+G +   +++ + ++Y+i FDDG+ + v+ +
  CDO68291.1 577 TRVFALWKQD---GHYYSGTV---HSQVELGKYDIHFDDGDSSQVELK 618
                 9******666...9*****98...5667778**********9988766 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        27      17      84 ..     719     820 ..     712     821 .. 0.67
   2 !    9.2   0.0    0.0008       1.6      43      81 ..     921     958 ..     885     961 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
      BRCT_2  17 pspsreklkklIeknGGevveti...............................tsavyiviaesneee...laekrkrrvvspkyIkdCikkgkllpl 81 
                  +++r+ l + I+ nGG+v ++                                 ++ ++v   ++++    la   + + +s+++++    +++ ++ 
  CDO68291.1 719 EEKERASLNAEIRRNGGVVLDDWtslfamdgtiaqkgnrwclkaddikwsdrkdVDRAFLVSDDYSHKPkylLALALGIPCLSVEWVRQVAMEQTDVDW 817
                 458999*************98886667777777777777777777777666654333344444444333666777777777777777776666666666 PP

      BRCT_2  82 eny 84 
                 ++y
  CDO68291.1 818 QPY 820
                 666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0008
      BRCT_2  43 vyiviaesneeelaekrkrrvvspkyIkdCikkgkllpl 81 
                 +yiv+  ++e  ++ +  ++ v+ +++kdC+ +g+l+pl
  CDO68291.1 921 DYIVVRDKQEC-KRLSVYEHCVDMDWVKDCLISGRLVPL 958
                 45555554433.566777889***************997 PP

>> DUF1325  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   2.8e+03      12      24 ..     416     428 ..     356     475 .. 0.57
   2 ?   12.1   0.0   7.8e-05      0.15      77     118 ..     575     614 ..     538     623 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
     DUF1325  12 kekeeeeewilae 24 
                 ++++++++w +a+
  CDO68291.1 416 ASAQKSSSWKHAV 428
                 2334444444444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.8e-05
     DUF1325  77 kgkkVLAlYPeTTtFYkAeVvaspkkkekeyklkFeddeeed 118
                 + ++V+Al+ +   +Y ++V+++   + ++y ++F+d + ++
  CDO68291.1 575 TATRVFALWKQDGHYYSGTVHSQ--VELGKYDIHFDDGDSSQ 614
                 6789******************5..579********988774 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011        23      50      86 ..     777     813 ..     728     819 .. 0.68
   2 ?    6.5   0.0    0.0043       8.5      27      95 ..     898     963 ..     892     964 .] 0.63

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
      BRCT_3  50 vvvtdsscpeevlkkaeqlkipvvSteWviQsLIege 86 
                  +v+d    +     a +l+ip +S+eWv Q  +e++
  CDO68291.1 777 FLVSDDYSHKPKYLLALALGIPCLSVEWVRQVAMEQT 813
                 4566666555556678899**********99777665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0043
      BRCT_3  27 laGaavvkkekseaee.islgkldvv.vtdsscpeevlkkaeqlkipvvSteWviQsLIegevlkydshek 95 
                 ++Ga +v++ ++e +   +   +d++ v d++   + l + e      v  +Wv  +LI+g++++  s++k
  CDO68291.1 898 CMGADTVEAVTDERHAsHDIREYDYIvVRDKQ-ECKRLSVYE----HCVDMDWVKDCLISGRLVPLPSRSK 963
                 56777777766666665555666665234443.222222222....368899***********99877765 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.023        47       7      32 ..     717     742 ..     710     744 .. 0.84
   2 ?    5.3   0.0    0.0096        19      43      63 .]     784     804 ..     774     804 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.023
                 CB-TTCHHHHHHHHHHTT-EEESSEE CS
   PTCB-BRCT   7 gysgddrkslqklieamGaeyskdlt 32 
                 +y++++r sl+  i ++G+ + +d+t
  CDO68291.1 717 KYEEKERASLNAEIRRNGGVVLDDWT 742
                 689999***************99997 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0096
                 S-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT  43 geGekyekAkkwgipvVsveW 63 
                 ++  ky  A   gip+ sveW
  CDO68291.1 784 SHKPKYLLALALGIPCLSVEW 804
                 5668***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 5707.21
//
Query:       CDO68292.1  [L=694]
Description: hypothetical protein BN946_scf184799.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.043   14.1   0.0       0.77   10.1   0.0    2.8  2  DUF4536   Domain of unknown function (DUF4536)
      0.054   13.3   2.2       0.38   10.6   0.0    2.6  3  TMEM51    Transmembrane protein 51
       0.17   11.7   0.2       0.45   10.4   0.2    1.7  1  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> DUF4536  Domain of unknown function (DUF4536)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00013      0.77       8      35 ..     186     213 ..     185     216 .. 0.83
   2 ?   -0.0   0.0      0.18   1.1e+03      26      45 ..     640     659 ..     636     660 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
     DUF4536   8 vSGsGLigaGvYvyvqarrrlklggkfg 35 
                 + G++++ +G+++ + arrr++    ++
  CDO68292.1 186 IVGLSFLLLGAFIVWRARRRPRERSCPT 213
                 67999***************98765555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.18
     DUF4536  26 rrlklggkfgmltiaqvafa 45 
                 r+++   ++ + t+aq+a+a
  CDO68292.1 640 RPPRVPSPPPLPTLAQMAMA 659
                 778888899999*****987 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.5     0.096   5.7e+02     133     186 ..      22      77 ..       9      93 .. 0.47
   2 ?   10.6   0.0   6.4e-05      0.38      39      94 ..     156     211 ..     140     266 .. 0.71
   3 ?   -3.2   0.1      0.98   5.9e+03     148     192 ..     599     630 ..     590     644 .. 0.48

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.096
      TMEM51 133 tsgeypvrqsnlres..tsqLPsyedlvevdeneaeeeaeaeaaasaeepsaaaas 186
                 ++ + + ++ n+++s  +s+LP ++   + ++++  ++++++++++a++  +++ s
  CDO68292.1  22 HKHSKAHKEGNTKPSlqQSSLPDHDFAEKPQKDDDGDDEQKTSKSDAKDKNKKNKS 77 
                 45555555555555455667777665555444433333332222222222222112 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.4e-05
      TMEM51  39 asanssskpdkdsgkeekksktssvAyVLvGaGvalLlLsicLgirdkkrarqeee 94 
                  ++   s  +++ ++ ++ ++   v +VLv +G+ +LlL   +  r ++r r+++ 
  CDO68292.1 156 GNSKALSVDHANRTGAQSPKHLPVVLIVLVIVGLSFLLLGAFIVWRARRRPRERSC 211
                 333333333333444444445667789***********************998754 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.98
      TMEM51 148 tsqLPsyedlvevdeneaeeeaeaeaaasaeepsaaaasrsnsra 192
                 + +LPs   + ++ + + ++ +              +as s+sr 
  CDO68292.1 599 MASLPSTRTVANAAGATSASGS-------------LPASSSKSRV 630
                 5566666666665554442222.............2222222222 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   7.5e-05      0.45      16      48 ..     176     205 ..     171     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.5e-05
    LapA_dom  16 elpLsllllvafgiGallgwllslwsylrlrre 48 
                 +lp++l++lv +g+ +ll + + +w   r rr+
  CDO68292.1 176 HLPVVLIVLVIVGLSFLLLGAFIVW---RARRR 205
                 79**************999999999...66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 4357.73
//
Query:       CDO68293.1  [L=492]
Description: hypothetical protein BN946_scf184799.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-18   64.5  11.4    1.4e-17   63.8  11.4    1.2  1  Snf7          Snf7
  ------ inclusion threshold ------
      0.016   15.9   2.6      0.042   14.5   0.4    2.4  2  AKNA          AT-hook-containing transcription factor
       0.33   10.7   9.0        0.7    9.7   0.8    2.5  2  Phage_GP20    Phage minor structural protein GP20
        1.4    8.7   9.2        6.9    6.5   9.2    2.2  1  CdvA          CdvA-like coiled-coil domain
        1.9    9.0   4.6       0.81   10.2   0.5    2.4  2  NPV_P10       Nucleopolyhedrovirus P10 protein
          6    7.1  12.6        1.1    9.5   3.6    2.5  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8  11.4   4.7e-21   1.4e-17       3     160 ..     292     455 ..     291     476 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 4.7e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HH CS
        Snf7   3 irsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkam..nk 99 
                 i++L++a +kl+k+ + l+++i +  + + +  ++++k++all L+ +k++e+ + +  ++l  le+ +l +e+   n e+++++++++ +++++  + 
  CDO68293.1 292 ILALKTAVQKLQKQVDDLQTRIDERTRRISEDLRQKRKETALLHLRSRKQLEEVRRKRVESLHLLESTLLRVETSAGNIEIMRSYESSTVTLQEIlsHP 390
                 5789*******************************************************************************************9999 PP

                 CTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-...GGTTHHHHHHHHHHHHHHHHHCSH..H CS
        Snf7 100 kvdidkidklmdeiedqmekaeeisEalsrsldda...deedEeeleaeLdaLeqelgdeell.d 160
                  ++ +kid++md ++ +++ a+e+++a+++  ++a   +++d+ eleaeL aL q++++ +   d
  CDO68293.1 391 LLQREKIDETMDALASANADAREVDDAIQMGTEMAhpdAAVDDSELEAELAALVQDVEKGKADaD 455
                 9***************************999999999999****************999995452 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   1.4e-05     0.042      48      86 ..     292     330 ..     281     341 .. 0.84
   2 ?    0.5   0.1      0.33   9.9e+02      34      67 ..     426     460 ..     410     489 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
        AKNA  48 IyqlgqrleeLkdqtdqlkqkveefskdiaqdspsplqd 86 
                 I  l++ +++L+ q+d l++++ e  ++i+ d   ++++
  CDO68293.1 292 ILALKTAVQKLQKQVDDLQTRIDERTRRISEDLRQKRKE 330
                 7889*************************9996444444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.33
        AKNA  34 qpgkfdpsreleaeIyqlgqrleeLkdqtd.qlkq 67 
                  p+    ++eleae+  l q +e+ k   d q ++
  CDO68293.1 426 HPDAAVDDSELEAELAALVQDVEKGKADADaQVQR 460
                 56667778999999999999999877666534454 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.8   0.00024       0.7       6      84 ..     285     332 ..     261     351 .. 0.63
   2 ?    5.4   1.0     0.005        15      48      80 ..     430     462 ..     426     469 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00024
  Phage_GP20   6 vmkaengkdit.kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldna 84 
                 v  a +g +++ k++++++++++d+l++++++r   +                                +++++  ++ a
  CDO68293.1 285 VT-AVDGGILAlKTAVQKLQKQVDDLQTRIDERTRRI-------------------------------SEDLRQKRKETA 332
                 33.4444444445555555555555555555555555...............................444444444444 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.005
  Phage_GP20  48 akdneeLqkqieelqaknkkakaeyeakiadlk 80 
                 a d  eL+++++ l ++++k ka+++a+++   
  CDO68293.1 430 AVDDSELEAELAALVQDVEKGKADADAQVQRDR 462
                 56889***********************99755 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.2    0.0023       6.9       4     118 ..     297     414 ..     295     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0023
        CdvA   4 kALeeLvsegdipkstyeeikekleealkklkekakelkeklkkrlkele.dqiksleka.lanlkisyasGEid.EeaYksaieairellesaleeke 99 
                  A ++L ++ d  + + +e  ++++e l++ +++ + l  + +k+l+e++ + ++sl+ +  + l+++  +G i+  ++Y+s++  ++e l + l ++e
  CDO68293.1 297 TAVQKLQKQVDDLQTRIDERTRRISEDLRQKRKETALLHLRSRKQLEEVRrKRVESLHLLeSTLLRVETSAGNIEiMRSYESSTVTLQEILSHPLLQRE 395
                 6899999999***************************************735577777777778888888999984589******************** PP

        CdvA 100 eikklleklskleleeeev 118
                  i+++++ l++ +++  ev
  CDO68293.1 396 KIDETMDALASANADAREV 414
                 *********9988877665 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   0.00027      0.81      13      48 ..     285     317 ..     280     333 .. 0.62
   2 ?   -0.7   0.3       0.7   2.1e+03      18      18 ..     416     416 ..     378     465 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
     NPV_P10  13 ikavddkVdalqqqvddvqenlpdvtelnekLdaqs 48 
                 ++avd  + al+++v+++q+++ d   l++++d+ +
  CDO68293.1 285 VTAVDGGILALKTAVQKLQKQVDD---LQTRIDERT 317
                 566666666666666666666555...445555444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.7
     NPV_P10  18 d 18 
                 d
  CDO68293.1 416 D 416
                 2 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.6   0.00036       1.1      31      73 ..     292     334 ..     283     370 .. 0.80
   2 ?    1.8   1.5     0.095   2.8e+02       8      65 ..     394     453 ..     389     487 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00036
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCC CS
  Seryl_tRNA_N  31 lleldekrrelqveleelqaerNelskeIgkakkkkedaeeli 73 
                   +l+l ++ ++lq+++++lq++  e ++ I++  ++k + ++l+
    CDO68293.1 292 ILALKTAVQKLQKQVDDLQTRIDERTRRISEDLRQKRKETALL 334
                   899********************************94444443 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.095
                   HH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHCCCCCCT CS
  Seryl_tRNA_N   8 renpeavkeklkkRgedkadvdelleldekrrelqvele..elqaerNelskeIgkakkk 65 
                   re ++++ ++l++ ++d+ +vd+ +++ +++    ++++  el ae  +l + ++k k++
    CDO68293.1 394 REKIDETMDALASANADAREVDDAIQMGTEMAHPDAAVDdsELEAELAALVQDVEKGKAD 453
                   667777777777777777777777777777766555555224555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1373  (0.0765798); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3179.82
//
Query:       CDO68294.1  [L=316]
Description: hypothetical protein BN946_scf184799.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2331.51
//
Query:       CDO68295.1  [L=621]
Description: hypothetical protein BN946_scf184799.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-34  117.6   0.0    2.3e-33  115.7   0.0    2.0  2  TruB_N        TruB family pseudouridylate synthase (N termina
    1.5e-31  109.7   0.0    8.2e-31  107.3   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family
     0.0014   18.7   0.1     0.0065   16.6   0.0    2.1  2  TruB_C_2      tRNA pseudouridylate synthase B C-terminal doma


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   3.9e-37   2.3e-33       6     140 ..     362     495 ..     355     503 .. 0.86
   2 ?   -2.3   0.0      0.87   5.2e+03     136     149 .]     538     551 ..     527     551 .. 0.81

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 3.9e-37
                 -S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE---------------- CS
      TruB_N   6 akkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvkvnGkr 104
                 a k+G +GtLDpla GvL  ++    + ++ ++  ++eY++t+ lg etd++D+eg+ ++++ ++++t+e++e++l++f+G+ieq+pp++SA+k++G +
  CDO68295.1 362 AVKIGQGGTLDPLADGVLGNIF--RVRGVKPFS-RTQEYRTTCLLGCETDSYDSEGKQVRQAPWHHVTREQVEKTLDQFRGAIEQIPPIFSALKMDGMP 457
                 56***************95444..234444444.4589***********************99************************************ PP

                 ------------..-----EEEEEEEEEEEEEEEEEEE CS
      TruB_N 105 lyelaregeeve..rkkrkvtiyelelleveepevele 140
                 lye+ar+g+ +   ++krkvt++elel+e+  +e +++
  CDO68295.1 458 LYEYARQGIPLPrpIEKRKVTVHELELVEWLGSEHSFR 495
                 ********999822467************988777766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.87
                 EEEEEEEESTTTTH CS
      TruB_N 136 evelevecskGtYi 149
                  + l++++s GtY+
  CDO68295.1 538 AFVLRMKVSGGTYV 551
                 78899********8 PP

>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   1.4e-34   8.2e-31       5     190 ..      21     191 ..      18     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 1.4e-34
                   E-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S- CS
  Aldo_ket_red   5 GtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdy 101
                   Gt++         ++a++++r a+ +Gi ++D A++Y    +e+ lGe +++s+k+r e++++tK+           + + +r  l +slk+L++dy
    CDO68295.1  21 GTGTALF-----GKDAANAVRVAIANGIIHLDGAQLY---GNEDSLGEGIASSGKPRSELFVTTKL-------GKVPEGKTVRDTLVDSLKKLRLDY 102
                   4443333.....2689*********************...9*************************.......55555678**************** PP

                   EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBS CS
  Aldo_ket_red 102 vDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliays 190
                   vDl+l+H p +   ++  v++ leel+keG+ ++iGvSnf ++ le++++ + v ++++q+ey+++   + + lle+ kk+++    y+
    CDO68295.1 103 VDLFLIHMPIHHKGQLKSVWKQLEELQKEGLTKSIGVSNFRIKDLEEVLEVATVVPAVNQIEYHPYVYKATKPLLEFQKKHNILATSYG 191
                   ******************************************************************9999************9777776 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.67     4e+03      34      45 ..     477     488 ..     471     519 .. 0.44
   2 !   16.6   0.0   1.1e-06    0.0065       1      29 [.     552     583 ..     552     603 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.67
                 B-HHHHHHHHHH CS
    TruB_C_2  34 vtledLedavll 45 
                 vt+++Le   +l
  CDO68295.1 477 VTVHELELVEWL 488
                 677777653332 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHTTS-EEEEEEEEEEETTE...G CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpf...d 29 
                 R +++D++ aLg  +hv  L R r g f   +
  CDO68295.1 552 RCIVHDLAHALGSAGHVVTLTRSRQGRFaleP 583
                 789***********************995441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.36s 00:00:01.10 Elapsed: 00:00:00.55
# Mc/sec: 3413.64
//
Query:       CDO68296.1  [L=339]
Description: hypothetical protein BN946_scf184799.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-27   94.5   0.0    1.9e-26   92.4   0.0    1.7  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   1.1e-30   1.9e-26      27     277 ..      36     312 ..      12     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 1.1e-30
                 HHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHT....TSSEEEEE---SSHHHHHHHHHCCCCCT-SEEEEE.---SS...---HHHHHH CS
       DHDPS  27 lieflinkgvdglvvaGttGEsatlsteekeqlveiaveaak....gripviagvGsnstseaiklakkaeeaGadgvlav.tPYYn...kpsqeglyq 117
                  i  l ++gv  l  aG+ GE++ l  +e++ l+++a++a +    +++p+iag+Gs st+e ++l+ +a+eaGad ++++   YY      +++ l+ 
  CDO68296.1  36 HIIRLAKAGVRPL-LAGSMGEAHHLTPAERVTLIKTARQALDeagfTSVPIIAGTGSGSTRETVQLSVEAAEAGADYAIVIcSGYYAgalAGNKKALKA 133
                 5555556666665.589*******************999888444568****************************66555166775222456778999 PP

                 HHHHHHHCHSS-EEEEE-HHHH.SHHHHHHHHHHHHT.STTEEEEEE-SS-CTHHHHHHCCCST........T......SEEEES-GGGHHHHHHTT-S CS
       DHDPS 118 hfkaiieatdlpvilYnvpsrt.gadlspetvkrLae.lenivgvKeavgdleevikikkevgk........d......lviysGddelllsalslGad 200
                 ++ ++ e+   pvi+Yn p+ + g dl  + +++La   +ni+gvK + g++ ++++i ++v++        +      ++++ G+ + +l+ + + a+
  CDO68296.1 134 FWAEVSEKSPIPVIIYNYPGASgGIDLDSDLITELAIeSPNIAGVKLTCGNVGKLTRITATVSDpsfaslhpRknpyapFLVLGGFTDFVLPSAFVEAH 232
                 ******9999*********987369**********977**************888888877754222222221333334899***************** PP

                 EEEESCHHCHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHHHHH...CCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HH CS
       DHDPS 201 GvisvtsniagermrqlikalkeGdlaea.aelnekllpliki...lfaepnvilvktalellGlvveatlrkPltpleee 277
                 G+i+  +n+ +  + +l+++ ++ + ++      ++l+ +i+     +a+  +++ k  le l    ++  rkPl p++ +
  CDO68296.1 233 GAITGLANVSPYAITKLYELSEKSKKDTTlLPEAQRLQGIIARadyTIAKASIAGTKFLLEKLYGYGGN-PRKPLPPIDVD 312
                 **********************99999884555677777875411145557777888888776555555.68888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1863.21
//
Query:       CDO68297.1  [L=268]
Description: hypothetical protein BN946_scf184799.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-44  150.3   0.2    4.9e-44  149.9   0.2    1.1  1  AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain


Domain annotation for each model (and alignments):
>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.2   2.7e-48   4.9e-44       1     136 []      95     231 ..      95     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 2.7e-48
                  EE---SSTT----SS-HHHHHHHHHTT-.EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--..CHCGGGS-TTCEEEEE--GGC CS
  AlaDh_PNT_N   1 gvpkEikagErRvaltPatvkkLvkaGh.evlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkep.seeelellkegqtlisflhlaa 96 
                  gvp Ei ++ErRvaltP++++ L+k+G+ +vlVe++aG +a+f de+Y++aGa +v+++ e+++++d++lkV++p   +e el+ke++tlisf+++a+
   CDO68297.1  95 GVPLEIYPNERRVALTPQNAALLLKKGFaQVLVEKSAGLEAQFLDEHYRAAGAVVVDRN-ELFERSDILLKVRPPvVGQEAELFKENSTLISFIYAAQ 191
                  79*************************77***************************988.***************6699******************* PP

                  HHHHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHHH CS
  AlaDh_PNT_N  97 npellealaekgvtaialElvprisraqsldaLssmaeia 136
                  n++ ++ala+k++t++a+E +prisraq +daLssma+ia
   CDO68297.1 192 NKAIIDALAAKKATVFAMEQIPRISRAQVFDALSSMANIA 231
                  **************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1692.18
//
Query:       CDO68298.1  [L=832]
Description: hypothetical protein BN946_scf184799.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.2e-169  563.3  25.0   4.2e-169  563.3  25.0    2.1  2  PNTB         NAD(P) transhydrogenase beta subunit
    1.1e-54  184.9   0.2    3.5e-54  183.3   0.0    2.1  2  AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
    9.2e-32  109.4   4.4    9.2e-32  109.4   4.4    4.6  3  PNTB_4TM     4TM region of pyridine nucleotide transhydrogena
  ------ inclusion threshold ------
       0.32   11.0   1.3       0.82    9.7   1.3    1.6  1  PRIMA1       Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> PNTB  NAD(P) transhydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.9     0.028   1.3e+02     145     232 ..     196     285 ..     192     321 .. 0.62
   2 !  563.3  25.0  9.4e-173  4.2e-169       2     455 ..     361     807 ..     360     811 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.028
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PNTB 145 KLqgllsskplklpgrkllnlllllalvvllvlfvla..asslllllllvlalllGvllvlpiggaDmpvvisllnsysGlaaaaaGfvl 232
                 K+++  +s++l+  +++  +++ll+  +  ++++      + +  ++++ la+l+G+ +v  +  a     +s+ n++sG+  +   fv+
  CDO68298.1 196 KVAEDAESRALTPWQKARQEVALLTGGMGSMIALGKItgPAFMSNFFTFGLAALIGYRVVWGVTPALHSPLMSVTNAISGMVGVGGMFVM 285
                 555555555555433333333333333333333222222333344777888888888888888888888888888888888766555555 PP

  == domain 2  score: 563.3 bits;  conditional E-value: 9.4e-173
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PNTB   2 elaylvaallfilglkglsspktarrgnllgavgmllavvatlllllkeaaseelalillalvigaviGlllakkvemtemPqlvallnslvGlAavlv 100
                 ++ yl +++l+i +l+gl+s++tar+gn+lg++g+ ++++a+ll  ++    e l  +++++++g+++G++++++++ +e+Pq+va+l+s+vGlAav++
  CDO68298.1 361 QAGYLTSSILCISSLSGLASQTTARQGNILGILGVGTGILASLL--AAGFPPEVLVQFAAVAALGSIAGTIIGRRITAIELPQMVAALHSVVGLAAVMT 457
                 688***************************************54..44444444555778899************************************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X...............XXXXXX CS
        PNTB 101 alaelleeeaekaeealeavelvelvlgvliGavtftGslvAflKLqgllsskplklpgrkllnlllllalvvllvlfvla......asslllllllvl 193
                 ++a++l++  +     +++++lv+++lgvliG++tftGs+vAflKL+g++ss+p+++p+++++n +ll a+++ +++fv++       ++  l + ++l
  CDO68298.1 458 SIASVLADLGH-----ATTLHLVTAYLGVLIGGITFTGSVVAFLKLAGRMSSRPVHIPAKHFVNSTLLGANIASMAAFVTMapsaplVAAGFLGANTLL 551
                 *****999654.....579********************************************************999998765443333334778888 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X--S-E CS
        PNTB 194 alllGvllvlpiggaDmpvvisllnsysGlaaaaaGfvlenklLiivGalvgasGaiLsyimckamNrsllnvllggfgaaassekaeeeekeekevke 292
                 +++ G++++++iggaDmpvvi++ln+ysG+a++a+Gf+l+n+lL++vG+l+g+sG+iLsyimc amNr+l+nvl+gg+  +a +   ++++k e ++++
  CDO68298.1 552 SFIKGFTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLDNQLLTTVGSLIGVSGSILSYIMCVAMNRTLTNVLFGGI--SAPT---QTDQKIEGSITK 645
                 9*****************************************************************************..2222...233456779*** PP

                 ESHHHHHHHHHC-SEEEEEE-HHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHCCGGGG-SEEEEES-SC CS
        PNTB 293 isaedvaellkeakkviivPGYGlavaqAqhavaelaklLeekgveVkfaiHPvAGRmPGhmnVLLAeadvpydkvlemdeineefaetDvalViGAnD 391
                 ++++d++++l +a++vi+v GYG+ava+Aq a+a+++++L++kg+e +faiHPvAGRmPG++nVLLAea+vpyd+v+emdein++f +tDv+lViGAnD
  CDO68298.1 646 TTVDDTVDALLNAESVILVVGYGMAVAKAQFAIADIVRMLRSKGIETRFAIHPVAGRMPGQCNVLLAEASVPYDIVHEMDEINNDFGKTDVTLVIGAND 744
                 *************************************************************************************************** PP

                 CC-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTT--S-GGGGSTTEEEEES-HHHHHH CS
        PNTB 392 vvnpaakedpnspiagmPvlevekakkvivlkrslasGYagveNplFykentsmlfgdakksle 455
                 +vnp a  d++spi gm vl+++k+k+viv+kr+++sGYa+++Np+Fy++ t+mlfgdak+++e
  CDO68298.1 745 TVNPIAL-DRSSPIGGMSVLHAWKSKQVIVMKRGMSSGYADIPNPMFYMPGTKMLFGDAKETCE 807
                 *******.7*****************************************************98 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.0   7.8e-58   3.5e-54      50     212 ..       1     178 [.       1     180 [. 0.99
   2 ?   -4.0   0.1       1.6   7.1e+03      97     111 ..     559     573 ..     557     574 .. 0.89

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 7.8e-58
                  TT-EEEEEESSHHHHHHHHHTTTCECEE....................HCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEET CS
  AlaDh_PNT_C  50 lgakVtvlDvrparleqleslgakfvev....................lksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDv 127
                  +ga+V+ +D+rpa++eq++slga+f+ev                    ++++++l+ e++k++d+vi+t+lipGk+aPkL+teemv++Mk+gsVivD+
   CDO68298.1   1 MGAIVRGFDTRPATREQIQSLGAEFLEVplqesgegqggyakemskefIEAEMALFMEQCKDVDIVITTALIPGKPAPKLITEEMVAAMKQGSVIVDL 98 
                  8************************************************************************************************* PP

                  TGGGT-SBTT--TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHHHHHHHHHHHHHCHHHTCCHHHCTSHHHHCCEEEETTEES CS
  AlaDh_PNT_C 128 AidqGGnvetsrltthgepvveekgvvhygvanlpgavprtasalltnntlpyleelladkglkkalkedealrkglvvkkGkvt 212
                  A+++GGn++   +t++ge +v+ kgv+++g+++lp+++p+++s+l++nn++++l+++  d+++ +++ ede++r+++v+++G+++
   CDO68298.1  99 AAETGGNCA---VTKPGELTVH-KGVTIIGYTDLPSRLPTQSSTLYSNNVTKFLLSIGGDGRF-AINLEDEVVRGAIVLHNGTLL 178
                  *********...*********9.**********************************999999.******************875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.6
                  E---BTTSS---SC- CS
  AlaDh_PNT_C  97 gtvlipGkkaPkLvt 111
                  +t++i G+  P+++t
   CDO68298.1 559 TTAAIGGADMPVVIT 573
                  899********9997 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   4.4     2e-35   9.2e-32       2      82 .]     241     326 ..     240     326 .. 0.97
   2 ?  -10.4  12.7         4   1.8e+04      34      34 ..     483     483 ..     366     597 .. 0.69
   3 ?   -0.7   1.4      0.44     2e+03      29      47 ..     573     591 ..     549     630 .. 0.51

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 2e-35
    PNTB_4TM   2 ltvfvLalfvGyeviwkVtpaLhtPLmsvtnaisgiiivgallalg.....stlakvlgaiavvlasinvvGGFlvtqrmLkmFkk 82 
                 +++f La+++Gy+v+w+VtpaLh+PLmsvtnaisg++ vg+++++g     +t+ ++lga++v+las+nv+GGF++t+rmL+mFk+
  CDO68298.1 241 FFTFGLAALIGYRVVWGVTPALHSPLMSVTNAISGMVGVGGMFVMGggylpATIPQALGALSVLLASVNVAGGFVITKRMLDMFKR 326
                 789**********************************************998999*****************************97 PP

  == domain 2  score: -10.4 bits;  conditional E-value: 4
    PNTB_4TM  34 i 34 
                 i
  CDO68298.1 483 I 483
                 1 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.44
    PNTB_4TM  29 svtnaisgiiivgallalg 47 
                  v na sg  +v+  ++l 
  CDO68298.1 573 TVLNAYSGFALVAEGFMLD 591
                 4444444444443322222 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.3   0.00018      0.82      26      60 ..     178     212 ..     170     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
      PRIMA1  26 ypplpppppppppprllsltaaestvsplepwwse 60 
                  pp p p+ppp +p   ++ a ++ +  l+pw + 
  CDO68298.1 178 LPPAPRPAPPPVAPPSAAKVAEDAESRALTPWQKA 212
                 69*********999999999999999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.54
# Mc/sec: 4669.78
//
Query:       CDO68299.1  [L=568]
Description: hypothetical protein BN946_scf184799.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-98  328.7  17.3      1e-97  327.1  17.3    1.6  1  Nuc_sug_transp  Nucleotide-sugar transporter
    4.7e-07   29.3   9.3    8.6e-07   28.4   9.3    1.4  1  UAA             UAA transporter family
    9.7e-05   21.5   1.0    9.7e-05   21.5   1.0    2.1  2  CRT-like        CRT-like, chloroquine-resistance transporter-
    0.00014   22.1   0.7    0.00014   22.1   0.7    2.6  3  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.049   13.0   0.2      0.049   13.0   0.2    2.4  3  TPT             Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.1  17.3  2.8e-101     1e-97       4     315 .]      52     380 ..      50     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 327.1 bits;  conditional E-value: 2.8e-101
  Nuc_sug_transp   4 klkyislvvlvvqnaslvltlrYartk.edkerylsttavllaeilklvvclllllkeekskv...............kkllrelkkeilakpkd 82 
                      lky+slv+l vqna l+l+++Y+r +  ++++y +++avll+e+lk  ++l++++    + +                   r+l ke++    d
      CDO68299.1  52 PLKYVSLVTLAVQNALLTLIMHYSRVSaAPSQTYSAASAVLLTELLKGSISLTVAFLRLDYCSpnspsgsslwnprvlLYRFRRLGKEVFR--PD 144
                     69************************999*********************99998866544332222222222221111223455555555..8* PP

  Nuc_sug_transp  83 tlklavPsliYtvqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaakeensvl 177
                      +kl++P+++Y++qnnl++va+snL+aat+qv+yq+kiltta+fsv++L++kls ++Wl+ll+L +Gv +vq+++ +s+ +++ ++  ++ n + 
      CDO68299.1 145 CWKLSIPAILYVIQNNLQFVAVSNLEAATFQVSYQMKILTTAAFSVVMLRKKLSPTKWLALLFLAIGVGVVQIQNGSSSGHST-GSL-HDMNAFK 237
                     ***************************************************************************99977666.555.599**** PP

  Nuc_sug_transp 178 GliavlaacllsgfaGvYfekiLkdsnvslWirniqlallsiilalltvllkdgskisekG.....ffkGydlvvwvvvllqavGGlvvavvvky 267
                     G++av++ac++sg+aGvYfe +Lk+s++ lW+rn+ql+l+s++ al+ ++++d s    +      +f  +    w++vl+q +GGl++a+v+ky
      CDO68299.1 238 GFMAVVMACFTSGLAGVYFEMVLKNSQADLWVRNVQLSLFSLLPALVPIIFSDASPARPSPgwlqqLFANFGAWAWATVLIQVLGGLLTALVIKY 332
                     ******************************************************988765348888999************************** PP

  Nuc_sug_transp 268 aDnilkgfatslaiilstvasvllldlkitllFllGallviaavflYs 315
                     aDnilkgfatsl+i++s +asv l+++++tl+F+lG+++v++a+++Y+
      CDO68299.1 333 ADNILKGFATSLSIVISFLASVALFNFQMTLTFVLGSTIVLVATWMYN 380
                     **********************************************96 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   9.3   2.4e-10   8.6e-07      61     300 ..     151     381 ..     135     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.4e-10
         UAA  61 PlktYvilvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk.kedskeslnkfllGial 158
                 P   Yvi   l f+  v n ea  +++s+ +       k++++   ++++l+k+ s  + l++l+l++Gv ++ + + +++ +++ + + ++++ G++ 
  CDO68299.1 151 PAILYVIQNNLQFV-AVSNLEAATFQVSYQM-------KILTTAAFSVVMLRKKLSPTKWLALLFLAIGVGVVQIQNGSSSgHSTGSLHDMNAFKGFMA 241
                 55555555444443.3555555566555544.......66788999*****************************9988888899999999******** PP

         UAA 159 lvlallldavlglvqeklykkygkhskealfyshl.lslplfl.llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgal 255
                 +v+a +++++ g++ e + k    +s+  l++ ++ lsl  +l  l   ++s +  ++ s+      ++     + + vl+q ++     + i+  +  
  CDO68299.1 242 VVMACFTSGLAGVYFEMVLK----NSQADLWVRNVqLSLFSLLpALVPIIFSDASPARPSPGWLQQLFANFGAWAWATVLIQVLGGLLTALVIKYADNI 336
                 ****************9999....5555566666515555555888899*********9999988788888888999999*****999999******** PP

         UAA 256 tvtlvltlRKfvslllSillFknpltlqhlvgtllVflglllysy 300
                      ++l  ++s l S+ lF+ ++tl+ ++g+ +V++++ +y++
  CDO68299.1 337 LKGFATSLSIVISFLASVALFNFQMTLTFVLGSTIVLVATWMYNQ 381
                 ******************************************975 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.0   2.7e-08   9.7e-05      69     201 ..     146     284 ..     130     298 .. 0.82
   2 ?    1.6   0.4     0.031   1.1e+02      95     135 ..     336     376 ..     299     388 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.7e-08
    CRT-like  69 rkFaimgaLDavsgilvvigavstsGslqvllnqaiipitllasllllkerysliqylGAlviilgvvvvlipsllg..esseg..nklvfn..lllli 161
                 +k  i ++L  +   l++++  ++   + ++  q+ i  t  +s+++l+++ s ++ l  l +++gv vv i++ +   +s+++  ++  f   + +++
  CDO68299.1 146 WKLSIPAILYVIQNNLQFVAVSNLEAATFQVSYQMKILTTAAFSVVMLRKKLSPTKWLALLFLAIGVGVVQIQNGSSsgHSTGSlhDMNAFKgfMAVVM 244
                 56666777888888999999999**************************************99999988877765541144332446667762245689 PP

    CRT-like 162 sviPvalSnvykeiafkeveldvlyLqawvalfqlligil 201
                 ++    l+ vy e+++k+++ d +  ++  +lf ll +++
  CDO68299.1 245 ACFTSGLAGVYFEMVLKNSQADLWVRNVQLSLFSLLPALV 284
                 99999****************************9997764 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.031
    CRT-like  95 slqvllnqaiipitllasllllkerysliqylGAlviilgv 135
                  l+ + + ++i+i++las+ l   +  l+ +lG ++++++ 
  CDO68299.1 336 ILKGFATSLSIVISFLASVALFNFQMTLTFVLGSTIVLVAT 376
                 34445566788888888888888888888999988887765 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.8   6.6e+03      14      35 ..      86     107 ..      55     114 .. 0.58
   2 !   22.1   0.7   3.9e-08   0.00014      75     135 ..     155     215 ..     133     217 .. 0.92
   3 !    5.2  15.6    0.0062        22       2     135 ..     237     379 ..     236     381 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
        EamA  14 waiyfvlskillrkvspltltf 35 
                 +a+++vl   ll+   +lt++f
  CDO68299.1  86 SAASAVLLTELLKGSISLTVAF 107
                 3444444444444444444444 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 3.9e-08
        EamA  75 tvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  v+ + l+f a+++++a++  +   +  + t+ +sv+ l++kl+ +++l++++  +Gv ++
  CDO68299.1 155 YVIQNNLQFVAVSNLEAATFQVSYQMKILTTAAFSVVMLRKKLSPTKWLALLFLAIGVGVV 215
                 567789***************************************************9876 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0062
        EamA   2 lgillallaalfwaiyfvlskillrkvspl.tltfvrfl.iagillliiallkegkl....aklslkd..........wllllllgllgtvlafllffy 84 
                 +g + ++ a++++++++v+  ++l++     ++  v++  ++ +  l+ + +++ ++    +                w++  +   l  vl+ ll   
  CDO68299.1 237 KGFMAVVMACFTSGLAGVYFEMVLKNSQADlWVRNVQLSlFSLLPALVPIIFSDASParpsP----GWlqqlfanfgaWAWATV---LIQVLGGLLTAL 328
                 677889999*************9999854435555544325555555555555555525331....212233444333555433...456777788999 PP

        EamA  85 alkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  +k+ +    +++tsl+ v++ + sv+l++ ++tl+ +lg  ++l+++++ 
  CDO68299.1 329 VIKYADNILKGFATSLSIVISFLASVALFNFQMTLTFVLGSTIVLVATWMY 379
                 99********************************************99875 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.7     6e+03     238     254 ..      51      67 ..      48      86 .. 0.78
   2 ?   13.0   0.2   1.4e-05     0.049     219     286 ..     145     212 ..     132     217 .. 0.87
   3 ?    4.6   3.4     0.005        18     145     290 .]     237     380 ..     223     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.7
         TPT 238 mvLervspvthsvantv 254
                 m L+ vs vt +v n++
  CDO68299.1  51 MPLKYVSLVTLAVQNAL 67 
                 56778888888888875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.4e-05
         TPT 219 llllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                 +++l + ++l+ ++n++ + ++++  + t+ v+  +K     ++sv+++++++s+ + +      +Gv
  CDO68299.1 145 CWKLSIPAILYVIQNNLQFVAVSNLEAATFQVSYQMKILTTAAFSVVMLRKKLSPTKWLALLFLAIGV 212
                 567788899*********************************************99988766555555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.005
         TPT 145 igfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallveg..vlktpsllkstkvslkevllllllsgvlfhlynqvaymvLe 241
                  gf++ +++ +t+ l +++   +lk++ + d       ++++sll  l  +++ +   +  +p  l++    + ++ ++  +  ++  l   ++  v++
  CDO68299.1 237 KGFMAVVMACFTSGLAGVYFEMVLKNS-QADLWVRNVQLSLFSLLPALVPIIFSDAspARPSPGWLQQL---FANFGAWAWATVLIQVLGGLLTALVIK 331
                 689999999999999999999999982.22322223334445544443334455552333333333333...678888888888888888888888999 PP

         TPT 242 rvspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflYs 290
                    ++    a ++  v++  +sv +f+ +++l  ++G+++++v +++Y+
  CDO68299.1 332 YADNILKGFATSLSIVISFLASVALFNFQMTLTFVLGSTIVLVATWMYN 380
                 999999999999999*********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3622.42
//
Query:       CDO68300.1  [L=740]
Description: hypothetical protein BN946_scf184799.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-09   36.3   0.0    1.5e-08   34.4   0.1    1.8  2  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
    0.00016   22.2   0.0    0.00038   21.0   0.0    1.6  1  OTU            OTU-like cysteine protease


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.23   2.1e+03      65     109 ..      85     129 ..      33     179 .. 0.71
   2 !   34.4   0.1   1.7e-12   1.5e-08      54     200 ..     471     646 ..     425     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.23
                    ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaak 109
                    +g +     ggav+s  p  ++   t ++ +d+  a  ++ +++ 
     CDO68300.1  85 SGAPPRAAAGGAVASASPAAAMTGLTASQVHDPTSAPVSRATGGA 129
                    456677788999999999977766666666666655555555554 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.7e-12
                    TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE....CCCHHGHHHHHHHHHHHHHHHHHHHHHTTS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  54 ggflgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni....ashrdhdlvrdlqllalllqvealnadrga 145
                    + ++            +++ g avls+  + s+ ++ + + +  ++ +r+  l+   ++l+     + ++  +  +  + +    +v +  +d+++
     CDO68300.1 471 YRYWSI-------SDKKTYSGTAVLSKIEPLSVDYTLPGHPDPASVKGRIVTLGFASCYLVGtyvvNAGTGLKTLDAKKEWNKHFEVYIRELDKKK 559
                    444444.......55699***************99999999999999999999999999999********************************** PP

                    EEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH.................H...............SSCESCETTTTTTTTTTTEB-BE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................x...............xxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 146 pvivaGDfNarpsdddsrvlrtrglalapap.................v...............glyllgggptptyvtraggsrlD 200
                    pvi+aGD+N++p++ d  ++ t+ + + +                                    ++++ ++++++++ ++ g+rlD
     CDO68300.1 560 PVIWAGDLNVAPTELDLANPKTNWNKTPGYTeaetsayarilntsgeePdapkfvdvwrqrhpsLRHYTYFSYRFNCREKGIGWRLD 646
                    **********************99999999998888887777666555055666677899999***********************9 PP

>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.2e-08   0.00038       3      83 ..     152     229 ..     150     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.2e-08
                 SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH..HHHHTTSTTHHHHHHHHHHHHHHCTS-E CS
         OTU   3 DGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg..ylkeiektaawggeleifalahiLrrpI 83 
                 D  CL+ +++ ++   +d+   +k + +r+ +a+++r    + ++ + ++     y++ i k++awgg++e+ +la+   + I
  CDO68300.1 152 DNSCLFSSIALAFE--QDI---SKAQSIRQIVADAIRRDPVKWNEAILGSRPReeYIQTILKPSAWGGAIELTILAEHYGTEI 229
                 557*********95..543...3558***********888888777766643345********************98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4820.23
//
Query:       CDO68301.1  [L=401]
Description: hypothetical protein BN946_scf184799.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-30  104.8   0.0    6.3e-30  104.0   0.0    1.4  1  Tom37     Outer mitochondrial membrane transport complex prot
    2.1e-10   40.2   0.2    6.1e-10   38.8   0.1    1.8  2  GST_C_6   Glutathione S-transferase, C-terminal domain
    5.6e-08   33.4   0.0    1.6e-07   32.0   0.0    1.7  2  GST_N_4   Glutathione S-transferase N-terminal domain
     0.0021   18.0   0.1      0.005   16.8   0.1    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   1.4e-33   6.3e-30       1     125 []      33     156 ..      33     156 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 1.4e-33
       Tom37   1 Claviaylkllal.apfevvessnpslsptgeLPaLkdgegtwisgfdnIveylrkkseesdldaslsakekadatAlisllesklaplllyslyvnse 98 
                 ++a++ +l+ lal + f+v ++ np+lsp+g+LP+L++g   + sg+++I++y+r++ + ++lda+ls+ e+a+ tA i+++++   +l++++ly+ +e
  CDO68301.1  33 SVAALLLLQ-LALpGHFSVAYCANPDLSPSGQLPFLTQGL-YHASGLSPIIAYVRRHPNARNLDAGLSPVETAQLTARIAHIDASYGDLVNHMLYSLQE 129
                 68999999*.555599********************9988.889******************************************************* PP

       Tom37  99 nyekvTrpayskllpfPlnyilplklr 125
                 n++ vTrpa+ ++lp+P++y++p ++r
  CDO68301.1 130 NWADVTRPALISMLPVPQRYYVPARIR 156
                 ***********************9987 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8     8e+03      36      56 ..      69      89 ..      66      90 .. 0.68
   2 !   38.8   0.1   1.4e-13   6.1e-10       2      63 ..     216     278 ..     215     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
     GST_C_6 36 qilytplespelrellkeypN 56
                q ly   + +++  +++++pN
  CDO68301.1 69 QGLYHASGLSPIIAYVRRHPN 89
                555665566678888888888 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 1.4e-13
     GST_C_6   2 kkdleaLselLgdkkyFfG.dkPtslDAlvFGhlaqilytplespelrellkeypNLvaycer 63 
                 ++ ++a   lLg +++F+G   Pt+lD+l+ +h + +l+  l++p   + l++yp Lva+c+ 
  CDO68301.1 216 RALFDAYDRLLGVHQFFMGcPAPTTLDVLFAAHSHILLDLRLPDPLVTSALESYPRLVAHCRA 278
                 677999*************999***********************8888999*********85 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.5e-11   1.6e-07      16      98 ..      47     129 ..      31     131 .. 0.87
   2 ?   -2.4   0.0       1.9   8.6e+03      54      81 ..     201     226 ..     199     229 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.5e-11
     GST_N_4  16 pyelepssne.mhaspkgklPfielngelliadsefiieflkekg..vdldaelseeqkadaralkalveeklynallyerwldpe 98 
                 ++ + +++n+ +  sp+g+lPf++ +  ++ ++ ++ii++++++    +lda+ls+ + a+  a  a ++ +  +++ + ++  +e
  CDO68301.1  47 HFSVAYCANPdL--SPSGQLPFLTQG-LYHASGLSPIIAYVRRHPnaRNLDAGLSPVETAQLTARIAHIDASYGDLVNHMLYSLQE 129
                 39999****988..***********5.55***************9999999****************************9995555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
     GST_N_4  54 flkekgvdldaelseeqkadaralkalv 81 
                 + k+++ +  +++ e+ +a ++a+ +l+
  CDO68301.1 201 HFKKTF-NR-EQVVEKARALFDAYDRLL 226
                 556666.33.577788899999999987 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.1e-06     0.005       5      69 .]     209     278 ..     180     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
                 CHHHHHCCHCHHHCTTT---SS..CTTCS--HHHHHHHHHHHHH...HHHHHS----.TT-HHHHHHHHH CS
     GST_C_2   5 eraleqldaaldaleahLadsp.flfGdqptlaDialapflvrl...raagpgfdir.eaypnlraWler 69 
                 e+++e+++a +da +++L+ ++ f++   pt  D+ +a++ + l   r ++p  +   e+yp+l+a++++
  CDO68301.1 209 EQVVEKARALFDAYDRLLGVHQfFMGCPAPTTLDVLFAAHSHILldlRLPDPLVTSAlESYPRLVAHCRA 278
                 6799***************999677777***********9998876566687776667*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2606.71
//
Query:       CDO68302.1  [L=461]
Description: hypothetical protein BN946_scf184799.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-59  198.7   1.9    4.6e-59  198.7   1.9    2.0  2  TAFII55_N       TAFII55 protein conserved region
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.62   10.2   0.0    1.9  2  HEPN_RnaseLS    RnaseLS-like HEPN
       0.87    8.5   4.7        1.5    7.7   4.7    1.3  1  Trep_dent_lipo  Treponema clustered lipoprotein (Trep_dent_li


Domain annotation for each model (and alignments):
>> TAFII55_N  TAFII55 protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.7   1.9   7.7e-63   4.6e-59       1     159 [.     107     255 ..     107     256 .. 0.91
   2 ?    0.1   0.8     0.098   5.8e+02      91     139 ..     351     399 ..     344     420 .. 0.54

  Alignments for each domain:
  == domain 1  score: 198.7 bits;  conditional E-value: 7.7e-63
   TAFII55_N   1 lEeqfiLRlpp.eeaeklreaiesgdvnkdklsiklekderravvkidgklyaaklvDLPtiiEslKtiDkknlyKtaDisqmllvkeeeeakkeeele 98 
                 +EeqfiLR+pp e++eklr++++++++ +d++++k+ kd+rrav++i++++y+ klvDLP+iiEs+Kt+D+k+++K+aDi+qml+v+++  +  ee l 
  CDO68302.1 107 FEEQFILRMPPnEDCEKLRKMVQAREI-SDDVWFKF-KDSRRAVFHIGNNMYSSKLVDLPCIIESQKTLDNKQMFKVADICQMLVVEDKIPN--EEAL- 200
                 59************************9.********.*************************************************443333..3332. PP

   TAFII55_N  99 eekskkkkkekkkekkfqyphGitpPlknvrkrRFrkrlkkkeieavekevkrLlraDaea 159
                     +++k+   + ++f +phGitpPlk+vrkrRFrkr+++++ie+ve+ev+rLl++Da a
  CDO68302.1 201 ----SNQKSF--NIDEFIWPHGITPPLKHVRKRRFRKRVNRRTIETVEQEVERLLEEDAMA 255
                 ....234444..889*******************************************987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.098
   TAFII55_N  91 akkeeeleeekskkkkkekkkekkfqyphGitpPlknvr.krRFrkrlkk 139
                 +++eee+eee++++ ++++++++ +q +  +   +++    rRF   lkk
  CDO68302.1 351 EEEEEEEEEEDESD-EDDDEDDEAVQARKLLNEEIQDLEaARRFEDALKK 399
                 22222222222222.22245666666666666666655424667666666 PP

>> HEPN_RnaseLS  RnaseLS-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0001      0.62      91     120 ..     122     151 ..     116     162 .. 0.91
   2 ?   -1.2   0.0      0.34     2e+03      41      59 ..     389     407 ..     387     422 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
  HEPN_RnaseLS  91 dklvelcggkelaeklWetWkegRnlvfHy 120
                   +kl+++++ +e+++ +W  +k +R  vfH 
    CDO68302.1 122 EKLRKMVQAREISDDVWFKFKDSRRAVFHI 151
                   689999***********************5 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.34
  HEPN_RnaseLS  41 aaKaYEgflKklfldlgli 59 
                   aa+ +E  lKkl  dl++ 
    CDO68302.1 389 AARRFEDALKKLQADLDMK 407
                   68999999**999887653 PP

>> Trep_dent_lipo  Treponema clustered lipoprotein (Trep_dent_lipo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.7   0.00024       1.5      51      91 ..     365     409 ..     341     421 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00024
  Trep_dent_lipo  51 lskeeededvktP....elikeleekkayeeslkklrleldkkdk 91 
                        +e+de v++     e i++le  +++e  lkkl+++ld+k  
      CDO68302.1 365 EDDDEDDEAVQARkllnEEIQDLEAARRFEDALKKLQADLDMKMA 409
                     4567888899776667799**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1595  (0.088962); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.47
# Mc/sec: 2935.00
//
Query:       CDO68303.1  [L=2357]
Description: Glycosyltransferase Family 48 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1319.3   0.0          0 1318.7   0.0    1.3  1  Glucan_synthase  1,3-beta-glucan synthase component
    2.1e-94  317.3   4.9    2.1e-94  317.3   4.9    3.9  4  Gaa1             Gaa1-like, GPI transamidase component
    1.4e-42  145.1   0.0    3.6e-42  143.7   0.0    1.8  1  FKS1_dom1        1,3-beta-glucan synthase subunit FKS1, domai


Domain annotation for each model (and alignments):
>> Glucan_synthase  1,3-beta-glucan synthase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1318.7   0.0         0         0       1     818 [.     725    1542 ..     725    1543 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1318.7 bits;  conditional E-value: 0
  Glucan_synthase    1 ffpknseaerRisfFaqslstplpealkvekmptFtvLiPhysEkillslkeiikeeekksrvtlleYLkqlypkeWknFvkdtkllaeeke 92  
                       ffp+  eaerRisfFa sl+t +pe+l+ve+mptFtvL+PhysEkillsl+eii+ee++++rvtlleYLkql+p eW+nFvkdtk+laee+e
       CDO68303.1  725 FFPSGGEAERRISFFASSLTTAVPEPLPVESMPTFTVLVPHYSEKILLSLREIIREEDQNTRVTLLEYLKQLHPIEWDNFVKDTKILAEESE 816 
                       79999************************************************************************************999 PP

  Glucan_synthase   93 ee..keeeekkeeellkekiedlpfyliGfkssepeytlrtriWaslrsqtLyrtvsGfmnYskalkllyrvenaslvellseesekleeel 182 
                       +    + +++++e++ +++++dlpfy+iGfk+++peytlrtriWaslr+qtLyrtvsG+mnYska+kllyrven+++v+ ++ ++++le+el
       CDO68303.1  817 TAstFDGTASTNEKASNKRTDDLPFYCIGFKTAAPEYTLRTRIWASLRAQTLYRTVSGMMNYSKAIKLLYRVENPQIVQRFAGNTDRLEREL 908 
                       882234566778889999************************************************************************** PP

  Glucan_synthase  183 eelaerKfklvvamqryakfkkeekenaelllkaypelkiayldeeaeeeeeekeyysvLidgsseideengkrkekyrirLsGnpilGdGK 274 
                       e++++rKfk+ v+mqryakf+kee enae+ll+ayp+l+iayldee+  + ++++++svLidg+seide++gkrk+k+r++L+GnpilGdGK
       CDO68303.1  909 ERMSRRKFKFTVSMQRYAKFNKEELENAEFLLRAYPDLQIAYLDEEPGPQGGDPRLFSVLIDGHSEIDERTGKRKPKFRVELPGNPILGDGK 1000
                       ******************************************************************************************** PP

  Glucan_synthase  275 sdnqnhaiiftRGeyiqviDanqdnyleEclKirsvLaefeeleleskkpyaeeiekeeekepvailGaREyiFsenigvLgdiaagkEqtF 366 
                       sdnqnhaiif+RGey+q+iDanqdnyleEclKir++L efe+++++s++pya+  +ke ++ pvai+G+REyiFsenigvLgdiaagkEqtF
       CDO68303.1 1001 SDNQNHAIIFYRGEYLQLIDANQDNYLEECLKIRNILGEFEQYTVSSQSPYAQWGHKEFSQFPVAIVGTREYIFSENIGVLGDIAAGKEQTF 1092
                       ******************************************************************************************** PP

  Glucan_synthase  367 gtlfaRtlaeiggklHYGHPDflnaifmttRGGvsKaqkglhlnEDiyaGmnallRgGrikHseYiqcGKGRDlGfgsilnFttKigaGmgE 458 
                       gtl+ R+la iggklHYGHPDflnaifmttRGGvsKaqkglhlnEDi+aGm+a+ RgGrikHseY+qcGKGRDlGfg+ilnF+tK+g+GmgE
       CDO68303.1 1093 GTLTPRVLAWIGGKLHYGHPDFLNAIFMTTRGGVSKAQKGLHLNEDIFAGMTAISRGGRIKHSEYYQCGKGRDLGFGTILNFQTKLGTGMGE 1184
                       ******************************************************************************************** PP

  Glucan_synthase  459 qlLsReyyylgtqlpldRfLsfyyahvGfhlnnllivlsvqlflllllnlgalekesiiceydkskkitdlekplgCynlkpvlewvkivvl 550 
                       q+LsReyyylgtqlp+dRfL+fyy h+Gfh+nn+l++ s+q+f+++ll lg+l+k+  ic+ d++ ++     + gCynl pv++w+k +++
       CDO68303.1 1185 QMLSREYYYLGTQLPMDRFLTFYYGHPGFHINNILVIYSIQTFMITLLYLGTLNKQLAICKVDSQGNVL--GGQPGCYNLIPVFDWIKHCIV 1274
                       ****************************************************************99998..7888***************** PP

  Glucan_synthase  551 sifivffisflPllvqellergvlkavsrllkhllslsplfevfvcqiyaksllkdllfGgAkYiatGRgfavtrisfaelysrfasssiyk 642 
                       sif+vffi+flPl++qellerg+ ka+ rl kh+lslsp+fevf++qiy++s+l++l+fGgA+YiatGRgfa+trisf++lysrfa  siy+
       CDO68303.1 1275 SIFLVFFIAFLPLFMQELLERGTGKALIRLGKHFLSLSPIFEVFSTQIYSQSILSNLTFGGARYIATGRGFATTRISFTILYSRFAGPSIYM 1366
                       ******************************************************************************************** PP

  Glucan_synthase  643 giellllllfatvtvwqaallyfwitvvslilaPflfnPhqfslldffvDyrdflrWlsrgnskskeesWisyvrqsrlritglkkkvlgee 734 
                       g++ lllll+at+++w++ l+yfw++v+sl++aPflfnPhqfs++df++Dyr+flrW+srgns++k++sW+ y+r sr+ itg+kkk+lg++
       CDO68303.1 1367 GMRNLLLLLYATMSIWTPFLMYFWVSVLSLCVAPFLFNPHQFSFADFIIDYREFLRWMSRGNSRAKASSWYGYCRLSRTMITGYKKKKLGHP 1458
                       ******************************************************************************************** PP

  Glucan_synthase  735 sekeskdvkrasllnlllseiilellvvlllliaylfinsqtgvkeaeatnsvlrlaivsllpillnvvvllvlfalslllgpl 818 
                       sek + dv ra+++++l+seii++++ ++l+++ay+f++s  + + + + ++++r+a++++ p+++n++vll lf++sl+lgp+
       CDO68303.1 1459 SEKLAGDVPRAKWRSVLFSEIIFPICGAILFIVAYMFVKSFPDRNGNPNPSPLIRIAVIAVGPVVWNATVLLSLFFVSLFLGPM 1542
                       *********************************************************************************997 PP

>> Gaa1  Gaa1-like, GPI transamidase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.12     7e+02     301     382 ..     371     458 ..     349     502 .. 0.54
   2 ?   -0.8   1.3       0.1     6e+02     404     480 ..    1489    1565 ..    1473    1612 .. 0.77
   3 ?   -3.5   0.8      0.66   3.9e+03     398     481 ..    1658    1718 ..    1641    1753 .. 0.40
   4 !  317.3   4.9   3.6e-98   2.1e-94       1     496 [.    1884    2348 ..    1884    2350 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.12
        Gaa1 301 klllvlllvlvlhllgllllllptkltql..eenlkteealllalllltvlllllplllslllkrll...ka.keq.kvellksvslll 382
                 +ll+ +  +++lh++ + ++++ ++ + +  +++ + + a+++++++l  ++ +l ++ ++l++ ++   ++ ++  ++ +  ++ l++
  CDO68303.1 371 HLLVNFNRIWILHVAVYWFYTAFNSPKVYapKNKQHPSPAMTWSATALGGAVATLIMIAATLAE-FSyipTSwHNAgHLTTRLVFLLVV 458
                 5566666666666666555555555444444555555555555555555554444444443332.221221111111222222222222 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.1
        Gaa1  404 lavPltfiarpkaeslrrllrllasvlllllsPlvvlllvllvlfkeleelkllleslqaalqlltealidwnvygs 480 
                  ++v  +f++++  ++ +   + l +++++ + P+v+ ++vll+lf     l  ++es++++  +++ ++    + g 
  CDO68303.1 1489 FIVAYMFVKSFPDRNGNPNPSPLIRIAVIAVGPVVWNATVLLSLFFVSLFLGPMMESWARFPAFMAALAHFLALIGL 1565
                  3455566666899999999******************9999997766666567777777777777666655444444 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.66
        Gaa1  398 allvallavPltfiar........................pkaeslrrllrllasvlllllsPlvvlllvllvlfkeleelkllleslqaalqllte 470 
                  a l+ ++++P +fi                          +k++++rr   l++++                                         
  CDO68303.1 1658 AHLLLIVMTPPMFIPFvdklhsmmmfwlrpskqirpplfsTKQKRQRRWIVLKYTL----------------------------------------- 1713
                  44444444444444333333333333333333333333321111111111111111......................................... PP

        Gaa1  471 alidwnvygsw 481 
                        vy  +
  CDO68303.1 1714 ------VYIIV 1718
                  ......11111 PP

  == domain 4  score: 317.3 bits;  conditional E-value: 3.6e-98
        Gaa1    1 kGeNvygilrAprgdstEAlVLvapw.r...tsdgeknlagvalalalaryfkrqslWaKDiIflvtedeqlglqaWleaYhdvetstlsvqsLdgk 93  
                  +G+N yg+l+Apr+++tEA+V++a+w +   + dg+ nl+gv+++lala+y+k++slWaKD++f++++    g+qaW++ Yh+ ++++l++++L+++
  CDO68303.1 1884 NGTNAYGVLQAPRASGTEAIVISASWlSrtgEGDGTLNLRGVSTVLALAKYLKKYSLWAKDLVFVISDGYLDGMQAWISTYHGETQPNLKADPLSLQ 1980
                  69************************6268889999**********************************************99999********** PP

        Gaa1   94 aGaiqaAlvlelpssedeidsldiky.eGlNGqLPNlDLfnlavsiaskemgikvslqgtlskedsaesyesrlktllrgllkqalgvptgahglFl 189 
                  +G i++Al++++    +++++l i++ eGlNG+LPN DL n ++ ia+  +g+++ ++++ + +d      s+      gll   l +   ++g   
  CDO68303.1 1981 SGVIWTALNIDY--PGHSFSHLGIFFeEGLNGRLPNQDLTNSVSLIARYTVGVPTLVYDHIDPRD-----DSNQP----GLLPSWLPETLKKNGDVQ 2066
                  ************..78889*****9846**********************************999.....22222....334444445556778889 PP

        Gaa1  190 rYhidaiTlkakgkkrsgkeditqlGrviEgvfRslNNLLErlHqSFFfYlLlstsrFvSIGtYlpsavllaasllikalalwlelsksqekeesek 286 
                  +++idaiTl a+   ++g +++++lGr++E+ +R+ NNLLErlH SFFfYlL+++  F  IG+Ylpsa+l+ +++l++ l  w++  ++ +   + +
  CDO68303.1 2067 EFRIDAITLFAVP--ATGPHGFHALGRIMESSLRTCNNLLERLHASFFFYLLVAPGTFMKIGSYLPSAILVGTAMLFTGLGEWVNAGWVLSPMATAS 2161
                  9********9999..5********************************************************************9988887766555 PP

        Gaa1  287 aeeeekkes.........eleerklllvlllvlvlhllgllllllptkltqleenlkteealllalllltvlllllplllslllkrllkakeqkvel 374 
                  +e  +             ++ +r +l ++++++++hl+g++l ll ++          ++   +a lll++l  ++pl+ s+++ +  + ++    +
  CDO68303.1 2162 KEGGQ---VatigdrkkwRSRHRPVLEPVAIMVLTHLIGVILFLLVSTSWF-------ATNQKVAGLLLYFLFAVIPLVASAFAPTAPSLHAPIPFV 2248
                  43332...1235778887777899999************666555555333.......122233344445555566666666654322223445678 PP

        Gaa1  375 lksvsllllglllsalallNfSLallvalla.vPltfiarpkaeslrrllrllasvlllllsPlvvlllvllvlfkeleelkllleslqaalqllte 470 
                  lk+++l++++ ++s++++lNfSLa ++a+++ +Plt+ ++++ +s+ +++  ++++ + l s ++vl        +e                   +
  CDO68303.1 2249 LKAFNLCFASAIVSITSVLNFSLAATLAIFLgLPLTLASPSTPSSSFSVRVGKYAAYTFLASAWLVL-------CPEE----------------TRQ 2322
                  8****************************999*******9888888888888888888999988777.......2333................358 PP

        Gaa1  471 alidwnvygswtfvvvalvwlPlWll 496 
                  a+ +w+v+ +w+ ++v++v++Pl l+
  CDO68303.1 2323 AIWNWEVLRVWFAPFVCVVYVPLVLQ 2348
                  99********************9876 PP

>> FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0   6.1e-46   3.6e-42       2     128 ..     225     332 ..     224     333 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 6.1e-46
   FKS1_dom1   2 kvlqiaLylliWGEaanvRflpeclcyifkcaadyleseeakeeeeelkeleeileekvseaaaseeeesfLkkvitPlyevlrkqeaeknkegkyvrr 100
                 +++q+aLyll+WGEa nvRf+peclc+ifkca dy++s e++++ + +                  +e  +L++vi+Ply+++r+q +e   egk+vrr
  CDO68303.1 225 RLRQVALYLLCWGEAGNVRFTPECLCFIFKCADDYYRSPECQNRVDPV------------------PEGLYLETVIKPLYRFMRDQGYEV-VEGKFVRR 304
                 689*****************************************9999..................9***********************.9999**** PP

   FKS1_dom1 101 ekdHskiigYDDlNelFWskegieklkl 128
                 ekdH++iigYDD+N+lFW++eg++k++l
  CDO68303.1 305 EKDHDQIIGYDDINQLFWYPEGLAKIVL 332
                 *************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.31s 00:00:01.45 Elapsed: 00:00:00.52
# Mc/sec: 13769.07
//
Query:       CDO68304.1  [L=277]
Description: hypothetical protein BN946_scf184799.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-13   49.4   0.0    1.1e-12   48.2   0.0    1.6  1  SpoIIE           Stage II sporulation protein E (SpoIIE)
    0.00018   21.2   0.0    0.00027   20.6   0.0    1.3  1  PP2C_2           Protein phosphatase 2C
     0.0068   16.1   0.0      0.034   13.8   0.0    2.0  2  PP2C             Protein phosphatase 2C
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.27   11.1   0.0    1.4  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.6e-16   1.1e-12       4     190 ..      28     272 ..      25     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 2.6e-16
                 EEEEEEEECSS....SSHHHHHHHHHHHHHHHHHHHTTTS.......................HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTE CS
      SpoIIE   4 rlalvvgDvvG....hGleAalimgllrsalrelatagle.......................paevlkrlnralardleeeerfaTavlavydpstgk 75 
                 ++ l+v+D+vG     G++ +l++ +l    +++++a  +                       p e l+ ++  + r+ +  +   Ta+++ ++ s+g 
  CDO68304.1  28 GISLGVADGVGgwveSGVDPSLFSQALMYHAHRYSKAAWPgepevdptqeyeereqvegweltPLECLESAYGGVLRERNVLAGSSTACVLTLNASNGV 126
                 67899******************************999999**********************************88888889**************** PP

                 EEEEEESSSSEEEEETTS...TEEEEE--SS--..TTTSSS.............T-EEEEEEE--TTEEEEEESCCCCSSS..HHHHHHCCCHHCHHHH CS
      SpoIIE  76 leyanaGhpppllvrpdg...gtklllastglp..lGilpe.............adyetaelelepgdtlllyTDGvtEar..dsdgelfgkerllall 154
                 l+ an+G++  l++r++    +++ +++ ++ p  l+ lp               d++ +e++l+ gd+++ yTDG+ ++   ++   + ++ ++   l
  CDO68304.1 127 LRAANLGDSGFLVIRASSvihQQRSQTHFFNCPkqLSKLPVsqkrfsracvdqpGDADLHEMKLRHGDIVIAYTDGLSDNVfpAEMVAICSLVARQSQL 225
                 ****************9888888888888888899888887889**********************************888774444444444444333 PP

                 CT..................HCCHHHHHHHHHHHHTTSSSSS-EEEEEE CS
      SpoIIE 155 asa.............egesleelldalveellelgsgeleDDitllvl 190
                 +++             e  +++++++++v+ +  +  +++ DD+t+lv 
  CDO68304.1 226 QRHtipvsgqngvetvEDVEAQAMAERIVDYAPIT--NQKVDDVTVLVT 272
                 33333331222222112333666666666665554..4999*****985 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.1e-08   0.00027      13     183 ..      15     211 ..       8     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6.1e-08
      PP2C_2  13 qDalavwtdsggsll..aVaDGaGSakrSerGariaveavvealaelleseeee...........eeallraleaailadv..lkeeaeaq....dael 92 
                 +D++ v++ ++ s +   VaDG+G    S++   +  +a++ + +++ +++++            e++ ++     ++ +     e+a  +    ++ l
  CDO68304.1  15 EDFFYVQDMREKSGIslGVADGVGGWVESGVDPSLFSQALMYHAHRYSKAAWPGepevdptqeyeEREQVE----GWELTPleCLESAYGGvlreRNVL 109
                 788887777777776647**************9*******9999999977777767777875444444444....444333443344444456634456 PP

      PP2C_2  93 kdyatTllaav.vtpdeivalqiGDGaivvrdrdgevql.lgepdsgeyanqttfltsedaeeel.........rirrlkledgdalllmTDGlanslr 180
                    +t++++++ ++ + + a+++GD++ +v+++ + +++  ++ +      q   l+ ++   ++          ++++kl+ gd ++  TDGl++++ 
  CDO68304.1 110 AGSSTACVLTLnASNGVLRAANLGDSGFLVIRASSVIHQqRSQTHFFNCPKQLSKLPVSQKRFSRacvdqpgdaDLHEMKLRHGDIVIAYTDGLSDNVF 208
                 6666667777777778899*********998888777553777788888999988888865555588999999999999*99*************8886 PP

      PP2C_2 181 dee 183
                   e
  CDO68304.1 209 PAE 211
                 544 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.6e-06     0.034      98     144 ..     109     158 ..      41     164 .. 0.82
   2 ?    0.1   0.0      0.11   5.1e+02     206     234 ..     194     222 ..     170     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.6e-06
                 CT-EEEEEEEEEETTE..EEEEEESS-EEEEEETTEEE.EECS---STTS CS
        PP2C  98 sksGstavvalirgtk..lyvAnvGDSravLcrkgnak.keltedHkpsd 144
                 +   sta v  ++ ++  l  An+GDS  +++r++  + ++ +++H  ++
  CDO68304.1 109 LAGSSTACVLTLNASNgvLRAANLGDSGFLVIRASSVIhQQRSQTHFFNC 158
                 4556788888888888******************9999788899996665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
                 EEEEEE-HHHHTTSHHHHHHHHHHHHHHH CS
        PP2C 206 efliLacdGlwdvlsdqeavdlvrdelek 234
                 + +i  +dGl d + + e+v ++     +
  CDO68304.1 194 DIVIAYTDGLSDNVFPAEMVAICSLVARQ 222
                 45666799***999999999888655544 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     6e-05      0.27      37      88 ..      37      88 ..      28     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6e-05
  DNA_pol3_gamma3 37 lreqyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeeererlkela 88
                     +   +++G+dp+ +++ L+  +h+ + +   +e + d++ + eere+++ + 
       CDO68304.1 37 VGGWVESGVDPSLFSQALMYHAHRYSKAAWPGEPEVDPTQEYEEREQVEGWE 88
                     5567899***********************99******99999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1903.44
//
Query:       CDO68305.1  [L=212]
Description: hypothetical protein BN946_scf184799.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-50  169.6   0.0    4.5e-50  169.4   0.0    1.1  1  Ras           Ras family
    2.9e-30  105.0   0.0      5e-30  104.2   0.0    1.4  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      5e-10   39.1   0.0    6.9e-10   38.6   0.0    1.2  1  Arf           ADP-ribosylation factor family
    0.00048   19.6   0.0     0.0006   19.2   0.0    1.2  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
     0.0014   18.7   0.0      0.002   18.2   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0014   17.8   1.1       0.73    8.9   0.2    2.5  2  G-alpha       G-protein alpha subunit
     0.0094   15.5   0.0      0.014   14.9   0.0    1.2  1  AAA_7         P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.017   15.5   0.1       0.15   12.5   0.1    2.1  1  RNA_helicase  RNA helicase
      0.022   14.2   0.1      0.036   13.5   0.1    1.3  1  Pox_A32       Poxvirus A32 protein
      0.041   13.6   0.3      0.069   12.9   0.2    1.4  1  AAA_24        AAA domain
      0.083   12.8   0.1        8.1    6.3   0.1    2.2  2  RsgA_GTPase   RsgA GTPase
       0.11   12.5   0.1       0.22   11.5   0.1    1.5  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.11   12.9   0.0       0.14   12.5   0.0    1.3  1  AAA_16        AAA ATPase domain
       0.13   12.5   0.2       0.22   11.7   0.2    1.3  1  AAA_33        AAA domain
       0.13   11.9   0.0       0.24   11.0   0.0    1.6  1  STAS          STAS domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.0   3.8e-53   4.5e-50       1     160 [.      11     167 ..      11     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 3.8e-53
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 KlvlvGd+++GKt+++ r+ +++F+++y++T+gv+ +  +++++  ++ +++wDTAGqe+f  lr+ yy ++++ ++++d+tsr +++nv +w+++++r
  CDO68305.1  11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLTFSTNFGTICFNVWDTAGQEKFGGLRDGYYIQGQCGIIMFDVTSRITYKNVPNWHRDLER 109
                 99************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 v+e n+pivL+GnKvD++e r+v+t ++  ++++++++++e+SAk+n+n+e+ f  l+r++
  CDO68305.1 110 VCE-NIPIVLCGNKVDVKE-RKVKTGQVT-FHRKKSMQYFEISAKSNYNFEKPFLWLARKL 167
                 ***.7*************6.******987.***************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   4.2e-33     5e-30       1     119 [.      11     124 ..      11     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 4.2e-33
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GH.HHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..sr.ssenlk 96 
                 K+vlvGd+g+GKt+++kr+++++f++k+ +t+gv+++  ++++        +  ++ +n+WDtaGqe+f  l++ y+ + ++ i+++d  sr +++n+ 
  CDO68305.1  11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLTFST--------NFGTICFNVWDTAGQEKFGGLRDGYYIQGQCGIIMFDvtSRiTYKNVP 101
                 99**********************************9987642........345799*******************************65334679*** PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 +W ++l++v++++p++l+gnk+D
  CDO68305.1 102 NWHRDLERVCENIPIVLCGNKVD 124
                 **********************9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   5.8e-13   6.9e-10      15     133 ..      10     131 ..       3     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 5.8e-13
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 ++++l+G  ++GKtT +k+  ++e+++  + T+g +v+ l++     ++ f+vwD  Gqek   l + Y+ + +  i + D++ r   ++  +  + l 
  CDO68305.1  10 FKLVLVGDGGTGKTTFVKRHLTGEFEKkYIATLGVEVHPLTFstnfGTICFNVWDTAGQEKFGGLRDGYYIQGQCGIIMFDVTSRITYKNVPNWHRDL- 107
                 799***************999998876489********99986666889*************************999999998776555554444444. PP

                 TSGCCTTSEEEEEEE-TTSTTSS-H CS
         Arf 109 eeeelkevallvlaNKqDlpealse 133
                  e+  +++++++ +NK D++e   +
  CDO68305.1 108 -ERVCENIPIVLCGNKVDVKERKVK 131
                 .4456799**********9875433 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     5e-07    0.0006       1     109 [.      11     114 ..      11     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsi.iFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k++L+G +g GKt+  +  +  ++  + + +lg+ ++    +  ++g +++n+wD  Gqe+f      ++  +i  ++g+++  fDv+sr   +++ ++
  CDO68305.1  11 KLVLVGDGGTGKTTFVKRhLTGEFEKKYIATLGVEVHPLTFST-NFGTICFNVWDTAGQEKFGGL---RDGYYIQGQCGIIM--FDVTSRITYKNVPNW 103
                 899**********987661555677777888888888777766.6899**************987...69999999999775..699987555555555 PP

   Gtr1_RagA  99 keilealrqys 109
                 ++ le++ ++ 
  CDO68305.1 104 HRDLERVCENI 114
                 55555554433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.7e-06     0.002       2     114 .]      12     122 ..      11     144 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.7e-06
                 EEEEESTTSSHHHHHHH.HHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHH...H CS
    MMR_HSR1   2 vaivGrpNvGKStLina.ltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdaseeklkpl...d 94 
                  ++vG   +GK+t++++ ltge + +  ++ g+  ++ ++  +++   ++++Dt+G  e    +  gl++ +    ++ +i++ v ++  ++k++    
  CDO68305.1  12 LVLVGDGGTGKTTFVKRhLTGEfEKKYIATLGVEVHPLTFSTNFGTICFNVWDTAG-QE----KFgGLRDGYYIQGQCGIIMFDVTSR-ITYKNVpnwH 104
                 689************873677777788889999999999999888899********.54....4479999999888888888888755.3344430003 PP

                 HHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  95 eeleelleeakkplilvlnk 114
                 ++le++   +++p++l+ nk
  CDO68305.1 105 RDLERVC--ENIPIVLCGNK 122
                 4444443..67888888776 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2   0.00061      0.73      23      42 ..       9      28 ..       2      70 .. 0.74
   2 !    7.3   0.1     0.002       2.4     266     294 ..     110     138 ..     105     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00061
                EEEEEEEESTTSSHHHHHHH CS
     G-alpha 23 evkllllGqseSGKsTilkq 42
                ++kl+l+G ++ GK+T++k 
  CDO68305.1  9 TFKLVLVGDGGTGKTTFVKR 28
                589**************996 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.002
                 GGTTSEEEEEEE-HHHHHHHCCCS-GGGC CS
     G-alpha 266 llkntpiiLflnKlDileeKlkkgklsky 294
                   +n+pi+L  nK+D+ e+K+k+g+++ +
  CDO68305.1 110 VCENIPIVLCGNKVDVKERKVKTGQVTFH 138
                 5689********************88764 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.014      35      78 ..      11      55 ..       3      75 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaqtsanql 78
                +++lvG+ GtGKt+ +k+ l+ +++k+ + +l ++++  t ++++
  CDO68305.1 11 KLVLVGDGGTGKTTFVKRhLTGEFEKKYIATLGVEVHPLTFSTNF 55
                6789**************888888888778888877777766665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00012      0.15       2      94 ..      13     128 ..      12     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
  RNA_helicase   2 wlyGpsgeGKStlake.Lakallkkl....................klkkkdsvysrnpeddfwdgYt..gqevvvidDfgqvkdee.npsdlaeli 74 
                   +l+G+ g+GK+t++k+ L+ +++kk+                     ++ +d+   +++     dgY   gq  ++++D+ ++ + +  p++  +l 
    CDO68305.1  13 VLVGDGGTGKTTFVKRhLTGEFEKKYiatlgvevhpltfstnfgtiCFNVWDTA-GQEKFGGLRDGYYiqGQCGIIMFDVTSRITYKnVPNWHRDLE 108
                   799***********9868888888889999999999999887764433332222.244444455888777999999999999998887888999999 PP

  RNA_helicase  75 rlvsstpyplnmasleekgt 94 
                   r++++ p+ l+  +++ k++
    CDO68305.1 109 RVCENIPIVLCGNKVDVKER 128
                   99999999999888888874 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     3e-05     0.036      13      35 ..       9      31 ..       3      43 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
     Pox_A32 13 pFrlalvGgsGsGktvyLlsLlr 35
                 F+l+lvG  G Gkt++++  l+
  CDO68305.1  9 TFKLVLVGDGGTGKTTFVKRHLT 31
                6****************997554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   5.7e-05     0.069       4      23 ..      11      36 ..       9      79 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.7e-05
      AAA_24  4 kiliyGpsgiGKTtlakel......g 23
                k++++G+ g+GKTt++k+       +
  CDO68305.1 11 KLVLVGDGGTGKTTFVKRHltgefeK 36
                899*************9875555550 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0068       8.1     102     118 ..      12      28 ..       4      44 .. 0.80
   2 ?    4.4   0.0     0.026        31      45      92 ..     112     158 ..     105     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0068
                  EEEECSTTSSHHHHHHH CS
  RsgA_GTPase 102 svlvGqSGvGKStLina 118
                   vlvG  G GK+t++++
   CDO68305.1  12 LVLVGDGGTGKTTFVKR 28 
                  69************975 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.026
                  TT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkeglee 92 
                  ++i++v++ nK+D+ e++   + + +  ++  ++ + +sak++ ++e+
   CDO68305.1 112 ENIPIVLCGNKVDVKERKV-KTGQVTFHRKKSMQYFEISAKSNYNFEK 158
                  6899**********99998.5555566666779999999998887776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00019      0.22      22      41 ..      12      31 ..       2      42 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
                EEEEESTTSSHHHHHHHHHH CS
        TsaE 22 ilLeGdLGaGKTtlvrglak 41
                ++L Gd G+GKTt+v+  + 
  CDO68305.1 12 LVLVGDGGTGKTTFVKRHLT 31
                89*************98665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012      0.14      27      54 ..      12      40 ..       5     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      AAA_16 27 vllsGesGvGKsslv.rellralekdggi 54
                ++l+G+ G+GK++ v r+l  ++ek+++ 
  CDO68305.1 12 LVLVGDGGTGKTTFVkRHLTGEFEKKYIA 40
                679************77777788888533 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00018      0.22       3      20 ..      13      30 ..      12      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      AAA_33  3 llvGlpGsGKstlaerll 20
                +lvG  G+GK+t+++r+l
  CDO68305.1 13 VLVGDGGTGKTTFVKRHL 30
                789*************98 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.24       5      39 ..      81     115 ..      78     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                 EECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC CS
        STAS   5 eeiegililrldgpidfanaesfkeklkravgeep 39 
                 +++ gi+++ +++ i++ n++ + ++l+r++++ p
  CDO68305.1  81 QGQCGIIMFDVTSRITYKNVPNWHRDLERVCENIP 115
                 677799*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1448.81
//
Query:       CDO68306.1  [L=583]
Description: hypothetical protein BN946_scf184799.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-46  156.4  43.4    1.5e-45  155.7  41.7    2.2  2  MFS_1      Major Facilitator Superfamily
    4.2e-16   58.5  17.1    7.4e-16   57.7  17.1    1.4  1  TRI12      Fungal trichothecene efflux pump (TRI12)
    9.8e-12   44.5  13.4    9.8e-12   44.5  13.4    2.7  2  Sugar_tr   Sugar (and other) transporter
  ------ inclusion threshold ------
       0.02   15.2   0.3       0.02   15.2   0.3    3.2  4  DUF3522    Protein of unknown function (DUF3522)
       0.11   12.3   0.2       0.73    9.5   0.2    2.4  2  Neurensin  Neurensin
       0.48   10.1  12.9        4.6    6.9  12.5    2.7  1  HlyIII     Haemolysin-III related


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7  41.7   5.1e-49   1.5e-45       1     326 [.      52     441 ..      52     455 .. 0.83
   2 ?   -1.3   0.0      0.27   7.9e+02     151     188 ..     491     526 ..     483     556 .. 0.72

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 5.1e-49
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlg 98 
                 l++++fl+al+ +i+++alp ++  +lg  +  ++++ ++y l+++++s+++G +sd  Gr++vl  ++++f++g +l+++ a+++ +l+v+r++qG+g
  CDO68306.1  52 LMCCTFLAALDQTIVATALP-TIVAQLG-GGKDYSWVGSAYLLASSALSPLYGKISDITGRKPVLYSCIVIFLIGsALCGA-AQNMIWLVVCRAVQGIG 147
                 689*****************.9******.9999******************************************666666.566668*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +g+++ ++++ i+d+++ ++rg++ g+++a++++++++gpllgg+++++++Wr++f+i+ + + ++f l +++l  +p+  + +  +e           
  CDO68306.1 148 GGGIIQMVQITISDIVSLQDRGKYGGYIGATWGIASVIGPLLGGVFTDHVSWRWCFFINLPTGGVGFALLFFFLHLNPHHGRSF--WEHVaefdfvgll 244
                 ******************************************************************998555555555555555..555555******* PP

       MFS_1 189 ...........................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsgll 244
                                                              t+++p++p  ++++++    ++li+ +l +fgf+g +++lp+y  +vlg s + 
  CDO68306.1 245 liiagivlillgfnfsenswstaqtiaplvigvvilimasineLFTKRSPILP-PRLFKTRTTA-LILISTFLHAFGFFGGSYYLPVY-FQVLGSS-AT 339
                 *****************999999999999888888888888866666666666.5555555544.49999999999************.*******.8* PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt............ssavllll.............vlvliGfglgfv. 317
                 +ag+ +  ++l+ga +++++g++  r+g++r++++   +++++  gl+ +                                    ++vli + +g+v 
  CDO68306.1 340 MAGVRMLPFSLGGALFSIVSGQITSRTGSWRPIMWVAWAIMVLGWGLMTMLDEhsntaeqtpligL------QaamplkdmatstsAFVLIRMLGGTVg 432
                 *****************************8888888888877777777776656666654433330......233333444444446666666444442 PP

       MFS_1 318 fpsllalas 326
                  +  +a++s
  CDO68306.1 433 ISVGQAIIS 441
                 555555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.27
       MFS_1 151 ravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 + +++++++v   +f++  +l+++ ++ +++ + +++ 
  CDO68306.1 491 STIWIVNTPVIGAGFLM--VLFLRGYSLKRTIRAAPDA 526
                 56788888999999887..7777777777777666663 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  17.1   2.5e-19   7.4e-16      61     326 ..      64     319 ..      44     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.5e-19
       TRI12  61 qasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagp.agasplfvgel 158
                    a+alp i+ ++g  ++ s + + + +  +    + g+++d  gr+p++    ++ l+g+ +  +a+++  l+ + ++ g+  g       + + ++
  CDO68306.1  64 TIVATALPTIVAQLGGGKDYSWVGSAYLLASSALSPLYGKISDITGRKPVLYSCIVIFLIGSALCGAAQNMIWLVVCRAVQGIGGGGiIQMVQITISDI 162
                 35699**********99999988777776655555678************************99999999999**********987615678899***9 PP

       TRI12 159 ms..nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfl 255
                 +s  ++ k+ g +  +   ++ s ++p lg  ++   swrw f+i + t  +   l+  + +   ++  hg+     e +a  d++g++l+i+g+ l+l
  CDO68306.1 163 VSlqDRGKYGGYIG-ATWGIA-SVIGPLLGGVFTDHVSWRWCFFINLPTGGVGFALLFFFLH---LNPHHGRS--FWEHVAEFDFVGLLLIIAGIVLIL 254
                 98335667777654.444455.449*************************999999887776...45679985..5799******************** PP

       TRI12 256 lgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimgamn 326
                 lg  +    ++ w +a+ i  +  g+  l++ ++ e++ k   pi+pp lfk tr    ++lis+ + a+ 
  CDO68306.1 255 LGFNFS---ENSWSTAQTIAPLVIGVVILIMASINELFTKR-SPILPPRLFK-TRTTA-LILISTFLHAFG 319
                 ***996...689**************************995.7********9.66655.455677666655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5  13.4   3.3e-15   9.8e-12      47     190 ..      82     219 ..      45     226 .. 0.94
   2 ?   -2.6   7.3      0.63   1.9e+03      99     193 ..     286     392 ..     241     395 .. 0.63

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 3.3e-15
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                 +++++ s++l+ + + s + g+++d+ GRk++l  ++v+f+ig++l++aa+   ++  l+v+R + Gig G++  +v ++is i   + Rg+ +++   
  CDO68306.1  82 DYSWVGSAYLLASSALSPLYGKISDITGRKPVLYSCIVIFLIGSALCGAAQ---NMIWLVVCRAVQGIGGGGIIQMVQITISDIVSLQDRGKYGGYIGA 177
                 578999*********************************************...88999**************************************** PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                  + +  +++  +g ++ +  +   wr+ ++++l    + ++ll+f
  CDO68306.1 178 TWGIASVIGPLLGGVFTDHVS---WRWCFFINLPTGGVGFALLFF 219
                 999999999999999988888...*********999999999887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.63
                 T.................SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH CS
    Sugar_tr  99 k.................nsvevlivgRvlvGigvGlasvlvPmyisEiA.pkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlv 179
                 +                 +++ +++++ +l  +g  + s+  P+y + +   ++++g  +  +      G l+++++g ++++t++   wr  ++++++
  CDO68306.1 286 NelftkrspilpprlfktRTTALILISTFLHAFGFFGGSYYLPVYFQVLGsSATMAGVRMLPF---SLGGALFSIVSGQITSRTGS---WRPIMWVAWA 378
                 334444446666666666666666666666666666666666666665541333333332222...23578888888899999999...9999999999 PP

                 HHHHHHHHGGGS-- CS
    Sugar_tr 180 pallllilllflPE 193
                 + +l   l+++l+E
  CDO68306.1 379 IMVLGWGLMTMLDE 392
                 98888888888877 PP

>> DUF3522  Protein of unknown function (DUF3522)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.78   2.3e+03      67     113 ..      44      67 ..      28      78 .. 0.58
   2 ?   15.2   0.3   6.6e-06      0.02      97     167 ..     252     320 ..     234     328 .. 0.76
   3 ?   -1.1   0.1      0.66     2e+03      98     134 ..     355     390 ..     350     443 .. 0.64
   4 ?   -2.9   0.0       2.4   7.1e+03     111     142 ..     493     525 ..     485     543 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.78
     DUF3522  67 filsilavwvtlvyladldeklksllhylglllvailqekdrwslan 113
                 +i  + a ++++++la+ld+ +                       + 
  CDO68306.1  44 NIPIVFAGLMCCTFLAALDQTI-----------------------VA 67 
                 5555566666666666664333.......................22 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.6e-06
     DUF3522  97 lllvailqekdrwslantiipilvgllillvswliecvkkrkl.ypsllrrrlkrlnlqqllpgllllalAl 167
                 l+l+ +    + ws a+ti+p+++g++il+++ + e+++kr+  +p+   r  k++ +  +l+  +l a+++
  CDO68306.1 252 LILLGFNFSENSWSTAQTIAPLVIGVVILIMASINELFTKRSPiLPP---RLFKTRTTALILISTFLHAFGF 320
                 344444456899**************************999984666...6666666666666666666665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.66
     DUF3522  98 llvailqekdrwslantiipilvgllillvswliecv 134
                 + ++ +q + r++++  i+ ++ ++++l  + +  + 
  CDO68306.1 355 FSIVSGQITSRTGSWRPIMWVAWAIMVLGWGLMT-ML 390
                 5566678888888888887777777776666633.32 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2.4
     DUF3522 111 lantiip.ilvgllillvswliecvkkrklyps 142
                 ++ + +p i  g+l++l+   + ++++ +  p+
  CDO68306.1 493 IWIVNTPvIGAGFLMVLFLRGYSLKRTIRAAPD 525
                 566666767778888888877777777777776 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00024      0.73      45      68 ..     239     262 ..     221     282 .. 0.82
   2 ?   -1.7   0.0      0.73   2.2e+03      28      69 ..     481     520 ..     467     539 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
   Neurensin  45 lvvgtlvlllGvtallvGylvprr 68 
                   vg+l++++G++ +l+G+  ++ 
  CDO68306.1 239 DFVGLLLIIAGIVLILLGFNFSEN 262
                 469****************88765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.73
   Neurensin  28 llqrakqksesllwkv.slvvgtlvlllGvtallvGylvprrl 69 
                 +l +a +ks s++w v + v+g  +l+   +  l Gy+++r +
  CDO68306.1 481 ELTQAYSKSISTIWIVnTPVIGAGFLM---VLFLRGYSLKRTI 520
                 455666667777777753334444442...3445566666654 PP

>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  12.5    0.0016       4.6      41     152 ..     200     315 ..      59     405 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
      HlyIII  41 kvvvlvfl.lgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilyalakapkagllylslilalgvlgiisklvplfsr...... 132
                 ++++++ l  g +   l+ ++ H+ + h+ + + + +a++D++g+ l+iag +l l+ ++++++ + +   ++ +++ +v+ i+ ++  lf++      
  CDO68306.1 200 RWCFFINLpTGGVGFALLFFFLHL-NPHHGRSFWEHVAEFDFVGLLLIIAGIVLILLGFNFSENSWSTAQTIAPLVIGVVILIMASINELFTKrspilp 297
                 666666552445556666678898.7778889999**************************88665555555555555555666666677777444433 PP

      HlyIII 133 pearplravlfillgllgvi 152
                 p  r+++++  +l+ ++  +
  CDO68306.1 298 P--RLFKTRTTALILISTFL 315
                 1..55555555444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 3890.41
//
Query:       CDO68307.1  [L=381]
Description: hypothetical protein BN946_scf184799.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-43  147.0   0.0      5e-43  146.7   0.0    1.1  1  Vac_ImportDeg  Vacuolar import and degradation protein


Domain annotation for each model (and alignments):
>> Vac_ImportDeg  Vacuolar import and degradation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.0   2.8e-47     5e-43       1     129 [.     245     380 ..     245     381 .] 0.94

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 2.8e-47
  Vac_ImportDeg   1 flrpgakfkGeqqsgkkkyevkvelktvdleeslltGfleikglteekpeittffegeiidekysfltkkkkwkaseetDlehWkkleafkkllak 96 
                    +l pga+f+G+q+sg+++y+v+v++ +vd+++s+l+G+l+i+glt++ pe+tt+f++eii ++y+flt+  +w+a+e+ D+ hW +++af+ + ++
     CDO68307.1 245 CLYPGATFQGTQKSGRNSYDVNVTIVDVDFASSHLCGYLRIRGLTDDWPELTTYFDAEIIGSRYGFLTR--NWGATEQEDMVHWGRFPAFRYVKNE 338
                    5899*****************************************************************..8******************886544 PP

  Vac_ImportDeg  97 .........dlenkelifmrwkekflvpdervksiegasfeG 129
                             d  ++  +fmrwkekflvpd+rv++i+gasf+G
     CDO68307.1 339 lnkphltmkDALSRGAVFMRWKEKFLVPDHRVQDINGASFAG 380
                    88888877777778**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2882.08
//
Query:       CDO68308.1  [L=334]
Description: hypothetical protein BN946_scf184799.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-28   97.4   0.0      1e-27   97.2   0.0    1.0  1  Pkinase         Protein kinase domain
    1.1e-13   51.1   0.0    1.4e-13   50.7   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    2.3e-08   33.2   0.0    2.9e-08   32.9   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.013   15.4   0.0        6.3    6.6   0.0    2.3  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.2e-31     1e-27       1     212 [.      15     235 ..      15     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 2.2e-31
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle.rkgslse 97 
                 y++ +k+GeGsfG+++++++  ++++vA+K   ++ +      +++ E++  + l  +p i ++y++ +e  + +lv +++    l+dl     +++s 
  CDO68308.1  15 YRVGKKIGEGSFGVIFEGTNLLNSQTVAIKFEPRKAEAP----QLRDECRSYRILAgCPGIPQIYHFGQEGLHNILVIDLLGPS-LEDLFDmCGRKFSI 108
                 67899*************************987776665....5789********99***********************9854.66666643457*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 +++   a+q+++ ++ +H+k++i+rD+Kp+N+Li + g      + i+DFG+ak+++  ++         +s  gt +Y++     ++e s+  D+ +l
  CDO68308.1 109 KTVCMAARQMITRVQTIHEKNLIYRDIKPDNFLIGRPGTknanmIHIVDFGMAKQYRDPKTkqhipyreRKSLSGTARYMSINTHLGREQSRRDDLEAL 207
                 **********************************9755455677*************999999*****99***********999999999********* PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHT CS
     Pkinase 184 Gvilyelltgkppfsgekgkekvekeldq 212
                 G +++ +l g+ p++g k  + +++++++
  CDO68308.1 208 GHVFMYFLRGSLPWQGLKAAT-NKQKYEK 235
                 ***************655443.2233322 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   3.1e-17   1.4e-13       3     223 ..      17     241 ..      15     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 3.1e-17
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  +gkk+GeG+fG ++egt       ++++Va+K   ++a++ + ++ ++ ++i+     p i +++ +  ++ + ++v++++ g +L++       +k+
   CDO68308.1  17 VGKKIGEGSFGVIFEGTNL----LNSQTVAIKFEPRKAEAPQLRDECRSYRILA--GCPGIPQIYHFGQEGLHNILVIDLL-GPSLEDLFDMC-GRKF 106
                  689**************99....8899*******99999887776666666666..5688999999999999999999998.45899999998.**** PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsksDv 188
                  ++k+++  a q+   ++ +++k+l+ rd+   N L+ +      +++ i DfG+a++  + ++      +++++     ++m++ +   ++ + + D 
   CDO68308.1 107 SIKTVCMAARQMITRVQTIHEKNLIYRDIKPDNFLIGRpgtknANMIHIVDFGMAKQYRDPKTKqhipyRERKSLSGTARYMSINTHLGREQSRRDDL 204
                  ************************************988887788***********9943332223454889999999******************** PP

                  HHHHHHHHHHHTTSSGTTTTS...HHHHHHHHHHTTEE CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypgl...kneevleklkegkr 223
                   + G + +  +  g+ p++gl   +n++ +ek+ e+k+
   CDO68308.1 205 EALGHVFMYFLR-GSLPWQGLkaaTNKQKYEKIGEKKQ 241
                  ****87776555.9999998833345566666633333 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.5e-12   2.9e-08     306     406 ..     109     213 ..      75     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.5e-12
  Pkinase_fungal 306 kellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsyrh 395
                     k +  a r+ I+  +  + +++++ rDi  +N li  + +++ +   ++D+ +ak++ d+++++     +++   GT+ +m+i+   g e s r+
      CDO68308.1 109 KTVCMAARQMITRVQTIH-EKNLIYRDIKPDNFLIGRPGTKNANMIHIVDFGMAKQYRDPKTKQhipyrERKSLSGTARYMSINTHLGREQSRRD 202
                     55667889999999****.*****************999999999*************9988886666555999********************* PP

  Pkinase_fungal 396 DLESffyvllw 406
                     DLE +  v+++
      CDO68308.1 203 DLEALGHVFMY 213
                     ****9999988 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0014       6.3      22      69 ..      40      86 ..      33     101 .. 0.83
   2 ?    6.4   0.0    0.0017       7.4     166     196 ..     128     161 ..     113     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0014
                -EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE CS
         APH 22 ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigl 69
                +++ ++ p + +a+++r+e +++r La+ +  +P+++++++ + ++ l
  CDO68308.1 40 TVAIKFEPRKAEAPQLRDECRSYRILAGCPG-IPQIYHFGQEGLHNIL 86
                56677777778******************88.******9887777665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0017
                 EEEE-SS-SGGGEEEC.....TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvd...pddgrvtGviDfeda 196
                 + l+ +D++p+N+l+      +  ++ ++Df++a
  CDO68308.1 128 KNLIYRDIKPDNFLIGrpgTKNANMIHIVDFGMA 161
                 56899************9944455558*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.60
# Mc/sec: 1684.98
//
Query:       CDO68309.1  [L=1038]
Description: hypothetical protein BN946_scf184799.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0049   16.3   3.9      0.011   15.1   3.9    1.5  1  Not3            Not1 N-terminal domain, CCR4-Not complex comp
  ------ inclusion threshold ------
      0.012   15.5   1.4      0.024   14.5   1.4    1.4  1  Mt_ATP-synt_D   ATP synthase D chain, mitochondrial (ATP5H)
      0.017   15.0   3.2      0.031   14.1   3.2    1.3  1  Phage_GP20      Phage minor structural protein GP20
       0.43   10.2   6.3       0.93    9.1   6.3    1.5  1  GrpE            GrpE
       0.93    9.7   5.4          2    8.6   5.4    1.5  1  Fib_alpha       Fibrinogen alpha/beta chain family
        1.5    7.4   4.4        2.2    6.8   4.4    1.1  1  FapA            Flagellar Assembly Protein A
        3.2    8.1   6.8        1.2    9.5   3.3    2.1  2  CCDC-167        Coiled-coil domain-containing protein 167
          4    7.8   9.0          9    6.6   9.0    1.5  1  OmpH            Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.9   5.1e-06     0.011     109     207 ..     533     628 ..     523     637 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.1e-06
        Not3 109 aaaekldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkkskekarveeleklierhkfhieklelllrlleneelepeevek.ikedi 206
                 + ++ ldp+e+e+++    ++ ++++L++++++le e+++++++ + ++++ ++ r ++ ++++erh++  + ++++ r+le   +++e++e+ i+e++
  CDO68309.1 533 QLSSALDPEERERRQE---MDLIVQNLKHRFDDLEDELKQMKQQLHARDQEMQDLRATQQKERVERHEQA-TFIRKVHRQLETPVISKEQIENlIREAL 627
                 4455567777666655...566799****************99998888666666999999999998765.679*****************99567766 PP

        Not3 207 e 207
                 +
  CDO68309.1 628 D 628
                 5 PP

>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.4   1.1e-05     0.024      83     151 ..     533     601 ..     523     602 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                    TTTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
  Mt_ATP-synt_D  83 kyteevdaeekevkkeikefkeeskkrieelekeleklksllpfeemtmedfaeafPetaldkinkptf 151
                    + ++++d ee e  +e++  +++ k+r ++le+el+++k+ l+  +  m+d+++++ ++ ++  +++tf
     CDO68309.1 533 QLSSALDPEERERRQEMDLIVQNLKHRFDDLEDELKQMKQQLHARDQEMQDLRATQQKERVERHEQATF 601
                    567899*************************************************99999999888877 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.2   1.4e-05     0.031      15      64 ..     553     599 ..     545     632 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
  Phage_GP20  15 it..kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqak 64 
                 +   k ++d++e+e +++k+ql +rd++++dL +      + ++ +e ++++
  CDO68309.1 553 VQnlKHRFDDLEDELKQMKQQLHARDQEMQDLRAT-----QQKERVERHEQA 599
                 44579***************************877.....445555555544 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.3   0.00042      0.93       8      60 ..     547     599 ..     539     609 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
                 TTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHH CS
        GrpE   8 eeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfa 60 
                 +e +   ++l+ ++++le+e+k++k++l    +e++ lr   +ke+ e ++ a
  CDO68309.1 547 QEMDLIVQNLKHRFDDLEDELKQMKQQLHARDQEMQDLRATQQKERVERHEQA 599
                 55555678999***********************************9999877 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.4   0.00088         2      28      98 ..     551     620 ..     545     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00088
                 CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH CS
   Fib_alpha  28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketid 98 
                    +++k++ ++le+el++++++ +  ++ +++++ + +++  + +++ + i+k++++le   +  ke+i 
  CDO68309.1 551 LIVQNLKHRFDDLEDELKQMKQQLHARDQEMQDLRATQQKERVERHEQATFIRKVHRQLE-TPVISKEQIE 620
                 5568999**********************************9999999************.5555555555 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.4   0.00098       2.2     333     403 ..     554     622 ..     528     633 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00098
        FapA 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelke 403
                 ++lk ++++le+el++++++l+  +++++ l+++++++++e +  eq   +++   +l++ + + e++ + 
  CDO68309.1 554 QNLKHRFDDLEDELKQMKQQLHARDQEMQDLRATQQKERVERH--EQATFIRKVHRQLETPVISKEQIENL 622
                 68999999*******************9999997777765555..44444555555555555555555554 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.3   0.00056       1.2      38      69 ..     561     592 ..     527     596 .. 0.83
   2 ?   -2.6   0.1       3.3   7.5e+03      20      43 ..     602     625 ..     597     633 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00056
    CCDC-167  38 esleeEeaslkeqleenekeLksLrkeNrksm 69 
                 ++le+E++++k+ql+  ++e++ Lr   +k++
  CDO68309.1 561 DDLEDELKQMKQQLHARDQEMQDLRATQQKER 592
                 7899*********************9999976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
    CCDC-167  20 LeaverrlrkeelseeeResleeE 43 
                 + +v r+l++  +s+e+ e+l +E
  CDO68309.1 602 IRKVHRQLETPVISKEQIENLIRE 625
                 567889999999999986666554 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.0     0.004         9      20      91 ..     552     592 ..     524     629 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.004
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  20 aqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqell 91 
                 + ++l+  f +l++el++++++l++  +e+q                               +l++ qq+++
  CDO68309.1 552 IVQNLKHRFDDLEDELKQMKQQLHARDQEMQ-------------------------------DLRATQQKER 592
                 3334444444444444444444444444443...............................2222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2006  (0.111886); expected 358.6 (0.02)
Passed bias filter:                      856  (0.0477439); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.26u 0.37s 00:00:01.63 Elapsed: 00:00:00.53
# Mc/sec: 5936.32
//
Query:       CDO68310.1  [L=377]
Description: hypothetical protein BN946_scf184799.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-08   35.2   0.1    6.4e-08   33.0   0.0    2.1  2  JmjC          JmjC domain, hydroxylase
    0.00095   19.4   0.6     0.0023   18.2   0.6    1.6  1  C1_2          C1 domain
  ------ inclusion threshold ------
      0.017   14.8   1.1        3.5    7.3   0.7    2.3  2  DTW           DTW domain
      0.033   14.0   0.2        2.4    8.0   0.0    2.6  2  DUF1465       Protein of unknown function (DUF1465)
       0.12   12.2   0.0       0.78    9.6   0.0    2.1  2  AraC_binding  AraC-like ligand binding domain
        4.1    7.9   9.1       0.43   11.0   3.8    2.2  2  zf-C5HC2      C5HC2 zinc finger


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.1e-11   6.4e-08      27     105 ..       5      79 ..       1      88 [. 0.88
   2 ?   -1.0   0.0      0.75   2.2e+03      88     105 ..     318     335 ..     311     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.1e-11
                 EEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTGCCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT-EEEEEESS CS
        JmjC  27 hfgapkvWyiipeekkeklekvlskknskeqpdllrhkstlispkqlekegipvyrfvqkpgefVfvfpgayHsvfnlg 105
                   g++  W+++  +++ k+ +  +kk     +++l ++++  + ++l ++ + vy ++qk g++V v+p++ H+v+n g
  CDO68310.1   5 ENGGSSFWFMTAANDACKVAEYFQKKL----RQELDWETRVTTVEELGNAPFTVYVTEQKVGDLVLVPPRSCHQVVNSG 79 
                 567888999999999999999999995....467*******************************************86 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.75
                 T-EEEE-TT-EEEEEESS CS
        JmjC  88 gefVfvfpgayHsvfnlg 105
                 g+ + + pg+y  + ++ 
  CDO68310.1 318 GDGLLICPGCYVEGRSCV 335
                 88899*******999986 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.6   7.5e-07    0.0023      11      39 ..     279     307 ..     260     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.5e-07
        C1_2  11 kgedssesfnCsaCgrkidgffYsCseCd 39 
                 +++++s +f C+ Cg + +++f++C+ C+
  CDO68310.1 279 RSRNESHTFACDFCGADLFQSFFECKHCR 307
                 67899999*****************99*5 PP

>> DTW  DTW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0035        11      61     121 ..     130     234 ..      53     251 .. 0.72
   2 ?    7.3   0.7    0.0012       3.5       3      32 ..     323     352 ..     322     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0035
         DTW  61 sdveeeaklsallkdpkrksvllFPsknaksledllase.............................................aakase.....kkee 109
                 +++++  + +   ++++++ vl+FP++n   l d ++++                                             +          ++++
  CDO68310.1 130 EELQKALDTEVASQTDGHDDVLMFPNDND--LADGMNNNpalsglvgyrspnsespphtspfsestaklterarklkrlvqlfdE----VlheefSTKH 222
                 33444444455556667777*****9995..466666667899999999999999999999999988877776666555555541....0444567788 PP

         DTW 110 feekrlillDGT 121
                  e k+++l D+ 
  CDO68310.1 223 AEMKHVVLSDSS 234
                 999999999985 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
         DTW   3 lCerCllpaevclcsslppleklpikvlil 32 
                 +C+ C++  + c+c +l+p++ + + +l+l
  CDO68310.1 323 ICPGCYVEGRSCVCGQLEPVQCRSFDTLLL 352
                 6******************66565666665 PP

>> DUF1465  Protein of unknown function (DUF1465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.025        76      11      41 ..     119     149 ..     112     153 .. 0.86
   2 ?    8.0   0.0    0.0008       2.4      92     141 ..     177     226 ..     169     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHTTHHHHHHCTS-H CS
     DUF1465  11 kalfregmdLveetaayldgegreeskalsr 41 
                 + l+r  ++L ee  ++ld e  ++ + +++
  CDO68310.1 119 TVLYRSILQLTEELQKALDTEVASQTDGHDD 149
                 569*****************99999888775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0008
                 -..-----------HHHHHHHHHHHHHHHHHHHHHHHHHT-SSXXXX.XX CS
     DUF1465  92 aaeasdaeavaeLpeelqeLierserLyervrrLdrelreeaeaaeaaen 141
                 +++++++++++ + e++++L er+++L++ v+ +d+ l+ee ++++a+ +
  CDO68310.1 177 SPNSESPPHTSPFSESTAKLTERARKLKRLVQLFDEVLHEEFSTKHAEMK 226
                 4557888999999***************************9999877644 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00026      0.78      48     117 ..      62     136 ..      58     152 .. 0.79
   2 ?   -0.7   0.0      0.39   1.2e+03      48      63 ..     318     333 ..     310     334 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00026
                   T-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE.......E---TTTHHHHHHHHHHH CS
  AraC_binding  48 GdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpa.....lledeelaqllralfrll 117
                   Gdl+L+pp   H+   +++   ++ w ++ +  l+ +l+    + ++ ++p+      + +++++ql ++l ++l
    CDO68310.1  62 GDLVLVPPRSCHQVVNSGGLAMKTSWSRMTLNNLDKALHCELPIYRRVCRPEqyrvkTVLYRSILQLTEELQKAL 136
                   9***********************************999777777777777777777666666666666666666 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.39
                   T-EEEE-TTS-EEEEE CS
  AraC_binding  48 GdlfLlppgepHdyes 63 
                   Gd +L++pg+ ++++s
    CDO68310.1 318 GDGLLICPGCYVEGRS 333
                   9********9888875 PP

>> zf-C5HC2  C5HC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       1.8   5.3e+03      29      45 ..     107     123 ..      99     127 .. 0.65
   2 ?   11.0   3.8   0.00014      0.43       1      18 [.     289     306 ..     289     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
    zf-C5HC2  29 kelckecppknrvllyR 45 
                   +c+ ++   +++lyR
  CDO68310.1 107 RRVCRPEQYRVKTVLYR 123
                 55675444455559998 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00014
    zf-C5HC2   1 CslCkaycYlSavvckkc 18 
                 C++C a+++ S ++ck+c
  CDO68310.1 289 CDFCGADLFQSFFECKHC 306
                 ****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2548.07
//
Query:       CDO68311.1  [L=299]
Description: hypothetical protein BN946_scf184799.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-07   29.5   0.1    1.6e-06   28.6   0.1    1.6  1  LEA_2     Late embryogenesis abundant protein
    0.00022   20.6   0.2    0.00035   19.9   0.2    1.2  1  DUF1356   Protein of unknown function (DUF1356)
  ------ inclusion threshold ------
      0.022   14.2   0.7       0.11   11.9   0.7    1.9  1  Vac7      Vacuolar segregation subunit 7


Domain annotation for each model (and alignments):
>> LEA_2  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   2.7e-10   1.6e-06       2      98 ..     159     268 ..     158     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.7e-10
                 EEEEESSSS-EEEEEEEEEEEE..SSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH....HHHHHHHH..........HCCSEEEEEEEEEEE.EE CS
       LEA_2   2 lrvrNPNsfgvrydgleldlsy..ngqrlasgtspqgfsqpargtttlevpvsvsaddl....arelrallag........evgleleytlrgrlkvlg 86 
                 ++v NPN f+v++++l++++ y  n+++++  + +++  +  + +t +++pv+vs+++     ++ + +l++         + ++ l++ +++ lk l 
  CDO68311.1 159 ISVNNPNYFAVTISSLDAQVIYpiNNTEIG-FGHMGKLVLHQHEQTNFTFPVTVSYNATtdpsGAVVVDLAKHcgidpsvqASDVSLTVYVKVALKILS 256
                 89*******************999******.8888888888888888*********9988998666666664467888877777777777777777666 PP

                 ETTTSCEEEEEE CS
       LEA_2  87 kpilgsvtvpvk 98 
                  pi  + t +v+
  CDO68311.1 257 VPISHTITQQVS 268
                 666555555555 PP

>> DUF1356  Protein of unknown function (DUF1356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   5.8e-08   0.00035      75     151 ..     108     188 ..      95     219 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.8e-08
     DUF1356  75 avliCLllsgLv..vffLfPrsiavepvGlksskvafdkeeksvlLnitnvLnisnsnyypvtvtqltaevly..lktvvG 151
                  +++ Ll+s +    ++L P +i v     +      d +++s+ L +   + + n ny++vt+++l a+v y   +t +G
  CDO68311.1 108 MIFVFLLISIILslALWLRPPNIIVGTPTPDLNSFNIDPDKESISLGMPVNISVNNPNYFAVTISSLDAQVIYpiNNTEIG 188
                 4455555543331134677889999887777777777788*******************************9933345555 PP

>> Vac7  Vacuolar segregation subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   1.9e-05      0.11     266     369 ..      74     178 ..      10     180 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
        Vac7 266 sarsrrsrrrpnsaslrqleelqqrrrsllsrfaaClvltvllllv..vsgaigfl....fattkpLedvevvkiqnvlaseqelmlDl..evkAvNpN 356
                 s+rs r+ r++      ++ + +  r+ ++ rf +C ++++++ll+  + + + +l    + +  p  d++  +i+     ++ + l +  +++  NpN
  CDO68311.1  74 SSRSVRRWRYE---HQGEMWT-KGSRTRCFGRFFCCTIMIFVFLLIsiILSLALWLrppnIIVGTPTPDLNSFNID---PDKESISLGMpvNISVNNPN 165
                 34444433333...2222222.35677899******9999888876213333333322222333444455554444...45666665541167789*** PP

        Vac7 357 vvavtvdeldvni 369
                  +avt+++ld ++
  CDO68311.1 166 YFAVTISSLDAQV 178
                 ********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2007.03
//
Query:       CDO68312.1  [L=194]
Description: hypothetical protein BN946_scf184799.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-41  141.4   0.0    4.1e-41  141.0   0.0    1.0  1  DUF726         Protein of unknown function (DUF726)
     0.0029   17.2   0.1     0.0056   16.3   0.0    1.5  2  Abhydrolase_8  Alpha/beta hydrolase
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.021   14.8   0.0    1.5  2  Cutinase       Cutinase
      0.098   13.2   0.0        0.1   13.2   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
       0.19   11.3   0.0       0.28   10.8   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.0   1.1e-44   4.1e-41     198     339 ..       5     146 ..       2     149 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 1.1e-44
      DUF726 198 eraakaGklLAdallsraqGeRpvtLiGfslGARviyvCLlelakk...kalglvenvillGaPvtteakvwlkvrsvvsgRlvnvysenDylLgflyR 293
                 + a kaGk+L   l +r  G+Rp+tL+G+slG  vi++ L++la+    ++lglv++v+l+G Pv+t++ +w  +r vv+gR+vn+y +nDy+L+ l R
  CDO68312.1   5 TLAVKAGKVLGTLLAERVLGNRPITLVGYSLGSLVIFEALQYLASLppsQTLGLVQEVYLFGSPVPTDRLQWAAIRRVVAGRVVNGYGANDYVLAVLSR 103
                 5799**************************************998555599************************************************ PP

      DUF726 294 tssaqfrvaglqrieldvekvenvdvselvegHldYrkklkkilka 339
                 +++++ rvagl+++e  v++venv +   v+gHl++r ++ + l++
  CDO68312.1 104 VTDMNWRVAGLEPVE--VQGVENVACD-EVDGHLKWRGLIGQCLAK 146
                 ***************..59*****885.69*******999998875 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0056      96     173 ..      12     100 ..       2     105 .. 0.77
   2 ?   -3.0   0.0       1.3   4.8e+03      38      48 ..     166     176 ..     149     192 .. 0.44

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
  Abhydrolase_8  96 allrdlrats.vpgqhlallgHSYGSlvaslAldd........aaseVsdvvlyGSP..GleaesaakLgledarvfvmrgadDlienv 173
                    + l  l a+    +++++l+g S GSlv   Al+         +   V++v l+GSP    +++ aa   +  +rv  + ga+D++  v
     CDO68312.1  12 KVLGTLLAERvLGNRPITLVGYSLGSLVIFEALQYlaslppsqTLGLVQEVYLFGSPvpTDRLQWAAIRRVVAGRVVNGYGANDYVLAV 100
                    5555666666466789******************9766655433347*********832467899999999999999999999999765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
  Abhydrolase_8  38 tmvaearglra 48 
                    t+++e  g+ +
     CDO68312.1 166 TKIEEDIGMDE 176
                    22223333322 PP

>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.9e-06     0.021      80     139 ..      27      87 ..      24     107 .. 0.76
   2 ?   -2.2   0.0      0.96   3.5e+03      34      50 ..     112     128 ..      78     147 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
                 EEEEEEETHHHHHHHHHHTT.....S-.HHHHHHEEEEEEES-TTCCCCTT..S-TTS-GGGE CS
    Cutinase  80 kivlgGYSqGaqvidnaieggatatlp.aavadkvaavvlfGdpsnvaglp..evsklyaski 139
                  i l+GYS G+ vi +a++    a+lp +++   v+ v lfG p  ++ l+  ++  + a ++
  CDO68312.1  27 PITLVGYSLGSLVIFEALQY--LASLPpSQTLGLVQEVYLFGSPVPTDRLQwaAIRRVVAGRV 87 
                 5889****************..6666515677899********98877766555555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.96
                 .TTT-EEEEE------C CS
    Cutinase  34 vgsksvavqgvnYpAdl 50 
                  g + v+vqgv+  A++
  CDO68312.1 112 AGLEPVEVQGVENVACD 128
                 45555666666666655 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.9e-05       0.1      62     111 ..      19      82 ..       4     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
                    ......TTSEEEEEETCHHHHHHHHHHCC............EEEEES-...----TTTS----TT CS
  Abhydrolase_6  62 a....gggpvvlvGHSlGGalalaaapla..........lvvgvlldppp.talpagllaaalel 111
                    a    g +p+ lvG+SlG ++  +a+ ++          lv  v+l + p +++++ + aa++++
     CDO68312.1  19 AervlGNRPITLVGYSLGSLVIFEALQYLaslppsqtlgLVQEVYLFGSPvPTDRLQW-AAIRRV 82 
                    2344478999**********99997777777777876664455444442212222222.222222 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.8e-05      0.28      70      92 ..      23      45 ..      17      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
                   CTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1 70 lgddkltlvGhSmGGmialayaa 92
                   lg++++tlvG+S+G+++ +++++
     CDO68312.1 23 LGNRPITLVGYSLGSLVIFEALQ 45
                   899**************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1398.81
//
Query:       CDO68313.1  [L=374]
Description: hypothetical protein BN946_scf184799.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-36  125.3   4.8    3.9e-36  124.7   4.8    1.1  1  DUF726        Protein of unknown function (DUF726)
  ------ inclusion threshold ------
      0.011   15.8   0.4      0.092   12.8   0.1    2.3  2  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
       0.12   12.4   0.0       0.33   11.0   0.0    1.7  1  Barstar       Barstar (barnase inhibitor)


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   4.8   6.5e-40   3.9e-36       2     190 ..     179     365 ..     178     369 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 6.5e-40
      DUF726   2 kikrylliglAglaGgaligltggLaaPlvaagigallaglGltgsaa.fLasv.ggsa.vitallgaagAklsvkkmkkrvkeikdFefiplseqirl 97 
                 k+ r++ +g+ ++aGg+lig+tggLaaP v+a+++++l+ lG++g+a+ +La+  +gs+ v +al+ga+g k ++  + + + e++d +++p+++ + +
  CDO68313.1 179 KMLRMVGMGVGAVAGGVLIGVTGGLAAPAVGAAASTVLGWLGIGGTAVgMLATGlAGSSvVCGALFGAYGSKQTAAVIGEYTREVRDLAIQPVRQPKDT 277
                 678999**************************************9999889886688887889**********************************99 PP

      DUF726  98 ksltvtvsislelsdeddvtapwralakaekdlYalkwEvelLkelGkaletilasealsvakqeilkrtvlaslvaaltWPlaLlkvakild 190
                 + ++++v+++l   + +dvtapw+  + +  d +al+wEve+L++l +al ++++++a++  k ei+krt la+l +al  P a lk++ki++
  CDO68313.1 278 MAVRLCVTGWL--DTPEDVTAPWTVFEGN--DTFALQWEVEALQRLSNALVDLVKAQAMKYIKGEIIKRTFLAALFSAL-SPTAWLKITKIIG 365
                 88888888888..8889******877665..************************************************.9**********97 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.11   6.6e+02      54      95 ..      24      68 ..      12      77 .. 0.53
   2 ?   12.8   0.1   1.5e-05     0.092     126     165 ..     153     192 ..     146     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
                  HHHHHHHCS-T..THHHHHHHHHHHHH..STSS-HHHHHHHHHHH CS
  Spore_III_AB 54 aleklaekses..plseffeevaerlee.kegesfeeaweeavek 95
                  ++++l+++  s  + +++++++  +l + +  +  ++a+ ea+++
    CDO68313.1 24 VFQRLSRRLASfrNTADLYATMEANLTNtEASGRTKDAFVEALNN 68
                  455555555554444445555555555533444555555555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.5e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXX CS
  Spore_III_AB 126 lkalelaleeleeeieeareeakkkeklyrtlGvlaGlfl 165
                   lk+ + a+ee  ++ e aree ++k k+ r +G+ +G+++
    CDO68313.1 153 LKNPRQAIEEAGKKTEAAREEHARKNKMLRMVGMGVGAVA 192
                   566688999999*************************975 PP

>> Barstar  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.6e-05      0.33       4      41 ..      32      71 ..      31      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.6e-05
     Barstar  4 gakirdkadfldeiaealgfPdyfGrNlDALdDcLtd..a 41
                +a +r+ ad+++++ + l   +  Gr  DA+++ L+   +
  CDO68313.1 32 LASFRNTADLYATMEANLTNTEASGRTKDAFVEALNNwtQ 71
                67899******************************98762 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2527.88
//
Query:       CDO68314.1  [L=717]
Description: hypothetical protein BN946_scf184799.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-53  180.5   0.5    2.9e-28   99.0   0.0    2.5  2  Peptidase_M41  Peptidase family M41
    4.6e-37  127.4   0.0    1.2e-36  126.0   0.0    1.8  1  AAA            ATPase family associated with various cellular
    6.8e-10   38.6   0.1    1.7e-09   37.3   0.1    1.7  1  AAA_lid_3      AAA+ lid domain
    6.2e-05   23.4   4.6     0.0013   19.2   0.2    3.3  3  AAA_16         AAA ATPase domain
    0.00014   21.7   0.1    0.00043   20.1   0.0    1.8  2  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
    0.00019   20.8   0.0    0.00034   19.9   0.0    1.3  1  TIP49          TIP49 P-loop domain
    0.00036   20.5   0.1     0.0015   18.6   0.1    2.1  1  AAA_5          AAA domain (dynein-related subfamily)
    0.00054   20.2   1.0     0.0045   17.3   0.2    2.7  1  AAA_22         AAA domain
     0.0035   17.5   0.0      0.012   15.8   0.0    1.9  1  AAA_2          AAA domain (Cdc48 subfamily)
     0.0043   17.2   0.0     0.0096   16.1   0.0    1.7  1  AAA_33         AAA domain
     0.0052   16.2   0.2      0.012   14.9   0.2    1.5  1  Mg_chelatase   Magnesium chelatase, subunit ChlI
     0.0076   16.0   0.0      0.015   15.0   0.0    1.5  1  IstB_IS21      IstB-like ATP binding protein
     0.0092   16.5   0.0      0.021   15.3   0.0    1.7  1  AAA_18         AAA domain
  ------ inclusion threshold ------
      0.014   15.0   2.8       0.38   10.3   0.4    2.8  3  AAA_25         AAA domain
      0.019   15.2   0.0      0.043   14.1   0.0    1.6  1  AAA_28         AAA domain
      0.037   14.0   0.1       0.13   12.2   0.0    1.9  2  NACHT          NACHT domain
      0.044   12.9   0.0      0.098   11.8   0.0    1.6  1  DUF815         Protein of unknown function (DUF815)
      0.068   13.2   0.0       0.14   12.1   0.0    1.5  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
      0.075   12.7   6.5       0.13   11.9   6.5    1.3  1  PAP1           Transcription factor PAP1
      0.098   13.1   0.0       0.24   11.8   0.0    1.7  1  AAA_17         AAA domain
        0.2   12.2   7.2       0.84   10.1   7.2    2.1  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
        0.6    9.6   4.1       0.43   10.1   0.2    2.5  2  AAA_7          P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   3.5e-31   2.9e-28       2      78 ..     488     564 ..     487     569 .. 0.97
   2 !   79.2   0.1   4.2e-25   3.4e-22      80     191 .]     590     690 ..     587     690 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 3.5e-31
                    X--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M41   2 visekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEel 78 
                    +ise+ k+++AyHE+GHalv+l++++a+p++Kvt +PRg+alG+t +lP++d++s++ +e+la+++v++GGr+aEel
     CDO68314.1 488 FISEEMKRMTAYHEGGHALVALYTEGAMPLHKVTCVPRGHALGITSQLPKDDRYSVSLKEYLAEIDVCMGGRVAEEL 564
                    689************************************************************************97 PP

  == domain 2  score: 79.2 bits;  conditional E-value: 4.2e-25
                    HH..S-BGGGHHHHHHHHHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH CS
  Peptidase_M41  80 fg..evttGasnDlekatkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreeleal 173
                    +g  +vt+Gas+Dl++at+ ar+mv+++G s+k+Gpv l+++e+             ++s++ ++ei++ev++l+ +  +r++++l+ k++el++l
     CDO68314.1 590 YGpeNVTSGASSDLQHATRTARAMVKNWGYSHKIGPVYLSDRED-------------TISPKKKDEIEDEVRSLLIAGESRVTALLKAKADELHRL 672
                    66669*********************************999887.............489************************************ PP

                    HHHHHHHSEE-HHHHHHH CS
  Peptidase_M41 174 aeaLlekEtldaeeieel 191
                    a+aL+e+Etldaee++++
     CDO68314.1 673 ANALVEHETLDAEEVQKV 690
                    ***************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   1.5e-39   1.2e-36       1     118 [.     310     425 ..     310     458 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 1.5e-39
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+GppGtGKT+la+ava e+gv+fl  sgse+ +++vg ++k++relf++a++k+ p i+fiDE+da++++rs++++   ++++nqLl e+dg+ ++
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAGEAGVPFLFASGSEFDEMFVGVGAKRVRELFATARKKQ-PAIIFIDELDAIGGKRSSRDQHYMKQTLNQLLVEMDGFLQN 407
                 79******************************************************9.****************99**********************8 PP

                 SSTEEEEEEESSGGGSTHH CS
         AAA 100 eskvivigatnrpdkldpa 118
                 e+ +ivi+atn p++ldp 
  CDO68314.1 408 EG-IIVIAATNFPESLDPL 425
                 66.**************96 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   2.1e-12   1.7e-09       2      44 ..     430     472 ..     429     473 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.1e-12
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 vd   LA+ T G+SGADl++l++ Aa  A r+g k+++ ++fe
  CDO68314.1 430 VDAMVLARGTVGFSGADLQNLVNQAAVKAARDGAKAVDLKHFE 472
                 566679999*********************************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.8   2.3e+03     106     139 ..     156     213 ..      81     234 .. 0.52
   2 !   19.2   0.2   1.5e-06    0.0013       9      55 ..     286     337 ..     283     350 .. 0.69
   3 ?    4.2   0.0     0.061        50     123     147 ..     355     378 ..     350     413 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.8
      AAA_16 106 a...........avpelagaea...............srllellkrll.allsrderplvl 139
                 +           ++p+     a               +  +++l+++l + +  ++ p+v+
  CDO68314.1 156 TsesvlsesasaSSPSQQ---AaqevlsgkvtvgrsvNTDFDALRSALgRGAGVPGNPIVV 213
                 022222222221111111...1112223333333333444455555555555555555555 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.5e-06
      AAA_16   9 leqLlsalervrsgrp......elvllsGesGvGKsslvrellralekdggif 55 
                 l+++ + l++ +s ++        vll+G++G+GK+ l+r+++ ++    ++f
  CDO68314.1 286 LQEIVEFLKDPSSFGTlggklpKGVLLTGPPGTGKTMLARAVAGEAGVP-FLF 337
                 555555555555555555556699*****************99766544.444 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.061
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 +++l+a +++ ++p ++++D+l+ +
  CDO68314.1 355 VRELFATARK-KQPAIIFIDELDAI 378
                 6777888888.888********943 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   5.3e-07   0.00043      35      93 ..     309     375 ..     275     389 .. 0.76
   2 ?   -3.0   0.1       6.8   5.5e+03      91     102 ..     667     678 ..     665     689 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 5.3e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvlek.........agdlaalltnleekdvlfidei 93 
                  vll+GpPG Gkt la+ +a e gv +  +sg   ++          ++l a   + ++  ++fide+
  CDO68314.1 309 GVLLTGPPGTGKTMLARAVAGEAGVPFLFASGSEFDEmfvgvgakrVRELFATARK-KQPAIIFIDEL 375
                 59****************************99876541111110003333333222.33457777776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.8
      RuvB_N  91 deihrlsravee 102
                 de+hrl++a+ e
  CDO68314.1 667 DELHRLANALVE 678
                 9*****887544 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.2e-07   0.00034      51      88 ..     308     343 ..     274     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.2e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 ++vLl+Gp+gtGkt la a++ e g  vpf + sgse+
  CDO68314.1 308 KGVLLTGPPGTGKTMLARAVAGEAG--VPFLFASGSEF 343
                 79*********************98..*********96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.8e-06    0.0015       1      75 [.     309     376 ..     309     420 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.8e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGG CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEve 75 
                 +vlL GppGtgK++la+ +a   + +++   +++    ++++ ++       ++v   + +a + +++i+++DE++
  CDO68314.1 309 GVLLTGPPGTGKTMLARAVAGEAGVPFLFASGSE---FDEMFVGVGA-----KRVRELFATARKkQPAIIFIDELD 376
                 59***************99987777776655555...5666666663.....333333333333477888888877 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   5.6e-06    0.0045       8      87 ..     310     399 ..     307     417 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalr 87 
                 +++tG++GtGKT+l+r ++ ++      +              +r++ +f t+ ++  ++ ++ + l a+g ++++   + ++++ ++l+q l 
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAGEAGVPFLFASgsefdemfvgvgaKRVRELFATARKKQ-PAIIFIDELDAIGGKRSS---RDQHYMkQTLNQLLV 399
                 589***************999865555555777777777777666666677777776.666667777777766666...555555355555554 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.5e-05     0.012       6      88 ..     310     386 ..     307     422 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG--------- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessga 88 
                 +ll+gp g+Gkt+la+a+a    v    ++  a  se+ e      + ++ + +  +  ++++  i+++DE+d i  k+ss+ 
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAGEAGV----PFLFASGSEFDE--MFVGVGAKRVRELFATARKKQPAIIFIDELDAIGGKRSSRD 386
                 6899******************98....**********99..55555566666777888999999**********99733333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0096       2      79 ..     310     417 ..     310     478 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg.avllssdtlrrrlfg........tdqqskt..........................dytrvldrlyqilnelark 65 
                 vll G+pG+GK+ la+ ++ + g  +l +s ++++ +f+        +                                + ++  +++ ++l    + 
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAGEAGvPFLFASGSEFDEMFVgvgakrvrE-----LfatarkkqpaiifideldaiggkrssRDQHYMKQTLNQLLVEMDG 403
                 7899******************98777777777777776544322220.....1222222233444444444444444444444444444444444455 PP

      AAA_33  66 alsagrnvildatn 79 
                  l+ ++ +++ atn
  CDO68314.1 404 FLQNEGIIVIAATN 417
                 55555555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   1.5e-05     0.012      25      43 ..     310     328 ..     306     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtmla++++
    CDO68314.1 310 VLLTGPPGTGKTMLARAVA 328
                   89*************9875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-05     0.015      49      71 ..     309     331 ..     259     389 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +++l+Gp+G+GK+ la a++ ea
  CDO68314.1 309 GVLLTGPPGTGKTMLARAVAGEA 331
                 799***************98776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.6e-05     0.021       1      25 [.     310     340 ..     310     417 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......g 25 
                 +lltG+pG+GKt la++++ + g+      g
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAGEAGVpflfasG 340
                 79***************98776555544441 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00046      0.38      36      54 ..     310     328 ..     301     342 .. 0.81
   2 ?    3.6   0.0     0.053        43     129     172 ..     354     397 ..     331     402 .. 0.85
   3 ?   -3.0   0.1       5.4   4.4e+03     143     192 ..     425     474 ..     421     476 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00046
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pgtGKt+la  +a
  CDO68314.1 310 VLLTGPPGTGKTMLARAVA 328
                 68***********986555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.053
      AAA_25 129 dvdaleaaieevegvrlvviDplsralgg.densnsdvgalveal 172
                  v++l a++++ ++++ + iD l+++ g  ++ +++ +++ +++l
  CDO68314.1 354 RVRELFATARK-KQPAIIFIDELDAIGGKrSSRDQHYMKQTLNQL 397
                 578999*****.99***********99997777778889999887 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.4
      AAA_25 143 vrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhHvgKe 192
                 +rlv +D +  a g    s +d + lv++++  a+r ga  + + H+ ++
  CDO68314.1 425 LRLVEVDAMVLARGTVGFSGADLQNLVNQAAVKAARDGAKAVDLKHFEWA 474
                 67888888888888888999999999999999999988888888887765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.3e-05     0.043       2      27 ..     310     336 ..     309     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.3e-05
      AAA_28   2 ivitGgestGKTtlleaLa.argypvv 27 
                 + +tG+++tGKT l++a a + g+p +
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAgEAGVPFL 336
                 789****************54588755 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.13       3      24 ..     310     331 ..     308     348 .. 0.87
   2 ?   -1.9   0.0       3.3   2.7e+03      79     113 ..     364     398 ..     352     413 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 v+l+G++G GKT+L++ +a ++
  CDO68314.1 310 VLLTGPPGTGKTMLARAVAGEA 331
                 799*************998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                 SCCCEEEEEE-STT-SS-TCH.........HHHHH CS
       NACHT  79 lperlLlilDglDelvtdlgqkekqpvrtlLseli 113
                  ++ + + +D lD +  + +  ++  +++ L++l+
  CDO68314.1 364 KKQPAIIFIDELDAIGGKRSSRDQHYMKQTLNQLL 398
                 45566667788888887776655555666666555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012     0.098      13      77 ..     260     331 ..     253     395 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      DUF815  13 egalepveevdevklddLvgidkqkealventeqf........leglpannvLLwGarGtGKSslvkallney 77 
                 ++++ep++ +++ k++d++g+d+ k++l+e +e +        l g+  + vLL+G  GtGK  l +a+  e+
  CDO68314.1 260 QAEFEPIQ-TKTYKFSDVHGVDEAKAELQEIVEFLkdpssfgtLGGKLPKGVLLTGPPGTGKTMLARAVAGEA 331
                 45688885.56899***********9998766543222222335688899******************98775 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.14      12      45 ..     304     333 ..     280     341 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                 HHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  12 kklakalgdvilLeGdLGaGKTtlvrglakalgv 45 
                  kl     + +lL+G+ G+GKT+l+r++a + gv
  CDO68314.1 304 GKL----PKGVLLTGPPGTGKTMLARAVAGEAGV 333
                 222....335******************998887 PP

>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.5   0.00016      0.13     109     210 ..     117     218 ..      98     225 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
        PAP1 109 gstassaesqsstysansgtstssdSPsssseshqgqlSScgTSPE.....PstqSPaakksketsstieeeevahttidgeksfcekLglacgniknP 202
                 g ta+     s +  +++ +++ss SP ++ + +++q+SS+ TS        s +SP++++++e     ++ +v+ +     +   + Lg+  g   nP
  CDO68314.1 117 GTTAT---AASGSATTSQVQQSSSTSPDAAPTATSAQSSSTTTSESvlsesASASSPSQQAAQEVL--SGKVTVGRSVNTDFDALRSALGRGAGVPGNP 210
                 33333...3333334444455666788888888888888888876511111455666666655544..2233333333333455678899999999999 PP

        PAP1 203 iPaalsks 210
                 i  +l ++
  CDO68314.1 211 IVVTLAEP 218
                 98887766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00029      0.24       1      51 [.     313     364 ..     313     418 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00029
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklpl 51 
                 +G+PG GK+ +++ ++ + g+++l a G+ + e+    g+++ r+ ++++ +
  CDO68314.1 313 TGPPGTGKTMLARAVAGEAGVPFLFAsGSEFDEMFVGVGAKRVRELFATARK 364
                 7*********************985439998888888888766666665443 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.2     0.001      0.84       7      84 ..     127     204 ..     122     206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
  T7SS_ESX_EspC   7 VdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAA 84 
                     +++++++ +++  ++a +++sa+++++ +s++vl+   + ++++++a ++++  + + g++++++ + L+  L   A
     CDO68314.1 127 ATTSQVQQSSSTSPDAAPTATSAQSSSTTTSESVLSESASASSPSQQAAQEVLSGKVTVGRSVNTDFDALRSALGRGA 204
                    689******************************************************************999987655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.6       2.3   1.9e+03      37      81 ..     114     159 ..     105     164 .. 0.52
   2 ?   10.1   0.2   0.00053      0.43      34      56 ..     308     330 ..     305     398 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
       AAA_7  37 llvGptGtGKtviikd.llkkldkekylsltinfsaqtsanqlqdi 81 
                 +l G+t t+ +  +++  +++ ++++   +    saq s++++ + 
  CDO68314.1 114 ILAGTTATAASGSATTsQVQQSSSTSPDAAPTATSAQSSSTTTSES 159
                 5566665555544444344444444445555555555555555444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00053
       AAA_7  34 kpvllvGptGtGKtviikdllkk 56 
                 k vll+Gp GtGKt++++ +  +
  CDO68314.1 308 KGVLLTGPPGTGKTMLARAVAGE 330
                 679************99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 4597.56
//
Query:       CDO68315.1  [L=792]
Description: hypothetical protein BN946_scf184799.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-47  160.9   0.0    4.3e-47  160.0   0.0    1.4  1  DEAD_2        DEAD_2
    1.5e-45  155.2   2.1    5.2e-40  137.2   0.3    2.6  2  HBB           Helical and beta-bridge domain
    3.7e-38  131.4   0.4    1.8e-37  129.1   0.0    2.3  3  Helicase_C_2  Helicase C-terminal domain
    5.7e-05   23.2   0.7     0.0057   16.7   0.0    2.7  3  ResIII        Type III restriction enzyme, res subunit
     0.0023   17.7   0.1        0.3   10.8   0.0    2.5  2  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.026   13.8   0.5        3.9    6.6   0.0    2.8  3  DUF2075       Uncharacterized conserved protein (DUF2075)
       0.18   12.2   0.1        4.5    7.7   0.1    2.5  2  AAA           ATPase family associated with various cellular 


Domain annotation for each model (and alignments):
>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   1.7e-50   4.3e-47       1     160 [.      71     246 ..      71     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 1.7e-50
                 EEESSHHHHHHHHHHHHHHHHHCHH..........HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCH.......TTTTTT-SCCCC CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykkk..........kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeek.......eekCsffenlee 82 
                 ycsRT+ ++e++++elk+l++y+k+          ++++  ++L+SRknlCi++ev+kekk+k v+++C++l+++ + +k       +e C+++enl +
  CDO68315.1  71 YCSRTVPEIEKALSELKRLMDYRKEcaetdeqrekEASFYGIGLTSRKNLCIHPEVSKEKKGKVVDARCRDLTNSAVCQKgrenpgsVELCDWHENLGK 169
                 9***********************55566667777899**************************************9999999***99*********88 PP

                 HHHHHHHHHHC---CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHH CS
      DEAD_2  83 lkklkkllleevvdiedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNie 160
                 l+   +l++ +++++ d+ ++g+++++CPY+ +r++++++d+ii++++yLld+k++e++++  +k+ iv++DEAhNi 
  CDO68315.1 170 LEP-GSLIPPGIWTLADVLQYGRDNRICPYFCVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNIA 246
                 887.8*******************************************************7779************96 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.3     2e-43   5.2e-40       3     190 .]     248     388 ..     246     388 .. 0.98
   2 !   17.0   0.1   1.4e-06    0.0037     118     165 ..     405     454 ..     401     469 .. 0.81

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 2e-43
                 HCHCCCCHHCCCCCCCHHHHHHHHHCCCCHHHHSTTTECCHCHHHHHCHCHHHCHHHHHHHHHHHHHHHHHHHCCHHCCCTCC-SHHHHHHHHHHHHHH CS
         HBB   3 keaketdepklqdeysrLvegLreaeeereeeyvleeepilpdeileeavpglirsaehflsllkrlveygkarreekieksesPrsflsrlaefllaw 101
                  ++k+td+ klqdey +LvegL+ea++  +e+ ++++ p+lp+++l+ea+pg+ir+aehf+++lkr+vey+k+r+++ +++ e+P sfl++l+      
  CDO68315.1 248 GRIKKTDASKLQDEYMKLVEGLQEANS--DEDAFVSN-PVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQHLK------ 337
                 589**********************99..89******.*******************************************************...... PP

                 HTS.TTTEEEEEE.STT.EECCCCS-TCCHHHHHHHCHCCCCCCTS-SSHHHHHHHHT....EEE.S..S.GGHCCCCCCCCCSHTCCC CS
         HBB 102 lssdeedYvrlvskeegesLeavcldPskalrflkerlssllmsgtltpleeysdiiGleaklkkfpspfpkEnlivlfatdVsTkyke 190
                                     ++++++ +++lrf++erl+sl+++++l+ ++eys++                 +++++fat+V+T++k+
  CDO68315.1 338 --------------------DITYIE-RRPLRFCAERLQSLVRTLELNRIDEYSSL-----------------QKVASFATLVATYEKG 388
                 ....................******.*****************************.................*************986 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.4e-06
                 T.EECCCCS-TCCHHHHHHHCHCCC.CCCTS-SSHHHHHHHHT.....EE CS
         HBB 118 gesLeavcldPskalrflkerlssl.lmsgtltpleeysdiiGle.aklk 165
                 ++  +++cldP+ a++++ er ss+ ++sgtl+pl+ y +++ +   + +
  CDO68315.1 405 NPIFHLTCLDPAIAIKPVFERFSSVvITSGTLSPLDMYPKMLQFTpVVQE 454
                 677899************99987761689*********999776644444 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   4.8e+03      24      58 ..     222     264 ..     210     279 .. 0.73
   2 !  129.1   0.0   7.2e-41   1.8e-37       1     153 [.     499     657 ..     499     661 .. 0.93
   3 ?   -1.9   0.1       1.3   3.3e+03     153     170 ..     684     701 ..     684     702 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
  Helicase_C_2  24 evverlkeeleskkieifvee........keesrekvleeyke 58 
                   +v+e++++el+++ i +f+e         k+ + +k+ +ey++
    CDO68315.1 222 KVAEQVSKELSKDAIVVFDEAhnialgriKKTDASKLQDEYMK 264
                   6778888888888888888877788887777777777777776 PP

  == domain 2  score: 129.1 bits;  conditional E-value: 7.2e-41
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeel....eskkieifvee.keesrekvleeykek..kkkgaillavcrGklsEGidfsddllravii 90 
                   l+e++++vp+g+++ffpSy ++e++v+++++ +     +k++ ifve+ ++++++  le+y+++  +++gaill+v+rGk+sEGidf  +++ravi+
    CDO68315.1 499 LVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGilneVWKHKLIFVETpDANETSIALENYRRAcdNGRGAILLSVARGKVSEGIDFDHNYGRAVIM 595
                   57899**************************77555567777999998788899999******556******************************* PP

  Helicase_C_2  91 vglPfpnpkdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDe 153
                   +g+P++ +++  ++a+ eyl++  +  + +e+   +a+r+  Q++GR++R k+D+g +v+ D+
    CDO68315.1 596 FGVPYQYTESRILKARLEYLRDAYR-IRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADK 657
                   **********************999.999********************************97 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
  Helicase_C_2 153 eRfakeeireklpkwlre 170
                   +Rfa+++ r+klp+w+++
    CDO68315.1 684 QRFARADKRAKLPRWINQ 701
                   69*************986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0057      23      81 ..      34      93 ..      16     138 .. 0.72
   2 ?    3.8   0.0     0.019        50     127     146 ..     228     247 ..     208     271 .. 0.71
   3 ?   -2.2   0.1       1.4   3.6e+03      97     130 ..     728     761 ..     695     769 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
                TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH.HHHHHHHHHGGGGTGG. CS
      ResIII 23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk.slleqtleefkkflsea 81
                   + l++m+ GtGKT+ +++li ++++ ++ ++ l+ + r+   +e++l+e+k++++  
  CDO68315.1 34 ASGHCLLEMPSGTGKTVSLLSLIVSYQQFYPTKRKLIYCSRTvPEIEKALSELKRLMDYR 93
                455889************************999777766665456677777776666533 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.019
                 HHHTTT-SEEEEETGGGTTS CS
      ResIII 127 ellrdrfdviiiDEaHrlga 146
                 +++ ++  ++++DEaH+++ 
  CDO68315.1 228 SKELSKDAIVVFDEAHNIAL 247
                 3344455599******9875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
                 .......-SEEEEEHHHHHHTH........HHHT CS
      ResIII  97 kekdstnkkilvttiqsldadseeeeeeseellr 130
                 ++ +++++ i + t + +++++ +++ee   ++ 
  CDO68315.1 728 QNPNENQTGISLWTLEDIQKAQAKQKEEALAQEA 761
                 4446666667777777777766444444444433 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00012       0.3      14      87 ..      35     103 ..      25     123 .. 0.76
   2 ?    4.1   0.0     0.014        36      99     133 ..     209     245 ..     201     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                 TCEEEEEESTTSSHHHHHHHHHH..HHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvl..qivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa 87 
                  g++l++++ G+GKT   l  ++  q+       t+ k ++ + t   +e+ l++lk++++y   ++++ +  +++
  CDO68315.1  35 SGHCLLEMPSGTGKTVSLLSLIVsyQQ----FYPTKRKLIYCSRTVPEIEKALSELKRLMDYR--KECAETD-EQR 103
                 5799***********996666652244....468999999999999999999****9999983..4554433.333 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.014
                 SEEEEEHHHHHH.HH.HCTSSHCTTEEEEEEETHHHH CS
                 xxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrldd.ll.stgklnlsqvrflVlDEadrl 133
                 d+++     l+d  + ++ + +ls+  ++V+DEa+++
  CDO68315.1 209 DVIIYSFHYLLDpKVaEQVSKELSKDAIVVFDEAHNI 245
                 56666666666633344455569999*********87 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0015       3.9      10      56 ..      44      93 ..      38     120 .. 0.75
   2 ?    3.6   0.1     0.012        32      81     102 ..     226     247 ..     209     279 .. 0.72
   3 ?   -0.8   0.1      0.27   6.9e+02     163     198 ..     682     720 ..     625     764 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
     DUF2075 10 aGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealakke..e 56
                +GtGKtv ll+l++ + +    +r+ +y s+  p++++  ++l++    +
  CDO68315.1 44 SGTGKTVSLLSLIVSYqQFYPTKRKLIYCSRTVPEIEKALSELKRLMdyR 93
                6***********99996667788888888888888888877776655431 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.012
     DUF2075  81 eekkeepkedvvivDEAhrllt 102
                 + +ke  k  +v++DEAh +  
  CDO68315.1 226 QVSKELSKDAIVVFDEAHNIAL 247
                 5567778889********9877 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.27
     DUF2075 163 hLksqfRvaaseaviewvdalldgkkekakplss...qe 198
                 h ++  R ++ +++ +w+++ +++ + +  +  +   ++
  CDO68315.1 682 HIQRFARADKRAKLPRWINQYITETASNLSTDMAltlSK 720
                 788888999999999999999865544432222234433 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.13   3.4e+02       2      21 ..      39      58 ..      38     103 .. 0.69
   2 ?    7.7   0.1    0.0018       4.5      53      99 ..     227     272 ..     220     295 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.13
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                ll  p GtGKT    +++ +
  CDO68315.1 39 LLEMPSGTGKTVSLLSLIVS 58
                566699*****877766655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0018
                 HHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA  53 akeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 ++++  k  i+++DE++++a  r   +++++++++++ ++ ++g+++ 
  CDO68315.1 227 VSKELsKDAIVVFDEAHNIALGR--IKKTDASKLQDEYMKLVEGLQEA 272
                 333333558*************9..45555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5352.21
//
Query:       CDO68316.1  [L=531]
Description: hypothetical protein BN946_scf184799.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-06   26.8   8.5      0.022   15.0   0.6    4.9  5  TPR_12    Tetratricopeptide repeat
     0.0014   18.4   1.1        2.7    8.0   0.0    4.3  4  TPR_10    Tetratricopeptide repeat
     0.0026   17.7   3.4        1.6    9.0   0.0    4.2  4  TPR_2     Tetratricopeptide repeat
     0.0037   17.0   0.0      0.012   15.3   0.0    1.9  2  DUF2225   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
      0.083   13.2   2.4         99    3.5   0.0    4.3  5  TPR_8     Tetratricopeptide repeat
      0.097   12.7   0.0         42    4.5   0.0    3.6  3  TPR_7     Tetratricopeptide repeat
       0.11   12.3   4.1        1.7    8.6   0.1    3.4  4  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       0.3   7.8e+02      22      49 ..     182     211 ..     176     225 .. 0.66
   2 !   15.0   0.6   8.6e-06     0.022      19      72 ..     227     276 ..     205     280 .. 0.75
   3 !    8.4   0.0     0.001       2.6      45      76 ..     309     340 ..     305     350 .. 0.77
   4 ?    0.8   0.1      0.25   6.3e+02       8      35 ..     372     400 ..     365     403 .. 0.61
   5 ?    2.3   0.0     0.079     2e+02      62      72 ..     476     486 ..     454     491 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.3
      TPR_12  22 Alellekaleiarrl..lGpdhpltattlr 49 
                 A+e+l+ a+eia+++   G  hp t+t+l 
  CDO68316.1 182 AQEFLRIAIEIAEQAnaKGRLHPMTLTALL 211
                 566666666666333246677777777665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.6e-06
      TPR_12  19 ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +deA++ +e++   + +l  ++  ++a++   +g+l r+lg++e+Al++  +++
  CDO68316.1 227 LDEARSEYERV---WANL-SGQGVQAARIALKIGDLNRRLGDTEDALSWWHRSI 276
                 68999999999...8666.56899**********************98855555 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.001
      TPR_12  45 attlrnLgrlyralgryeeAlelleealaiae 76 
                 ++tl  L+  y  +g++++A+   e+al++++
  CDO68316.1 309 VSTLVSLSAFYATTGQLRQAQTVEEKALELLR 340
                 56777777778888888888888888888776 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.25
      TPR_12   8 nlaavlrr.lgrydeAlellekaleiarr 35 
                 +la+vl++ + + + ++++l +a e  +r
  CDO68316.1 372 HLAEVLYAlRAKSTTSIDWLTRAAESSER 400
                 57777765355577777777777666655 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.079
      TPR_12  62 eeAlelleeal 72 
                 ++Ale +e+al
  CDO68316.1 476 AKALECYERAL 486
                 45555555554 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.2     3e+03      18      29 ..     227     238 ..     223     239 .. 0.83
   2 ?    0.9   0.0      0.18   4.5e+02       9      31 ..     256     278 ..     249     280 .. 0.81
   3 !    8.0   0.0    0.0011       2.7       3      33 ..     310     340 ..     308     345 .. 0.91
   4 ?    4.3   0.0     0.015        38      27      37 ..     477     487 ..     471     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
      TPR_10  18 ydeAealleeal 29 
                 +deA+  +e++ 
  CDO68316.1 227 LDEARSEYERVW 238
                 699999999986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.18
      TPR_10   9 analrqrgrydeAealleealai 31 
                 + + r++g+ ++A+ + ++++++
  CDO68316.1 256 GDLNRRLGDTEDALSWWHRSIRL 278
                 5566899*********9999976 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0011
      TPR_10   3 sslnNLanalrqrgrydeAealleealairr 33 
                 s+l  L++ +  +g++ +A    e+al++ r
  CDO68316.1 310 STLVSLSAFYATTGQLRQAQTVEEKALELLR 340
                 78999**********************9976 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.015
      TPR_10  27 ealairrrllG 37 
                 +al++++r+lG
  CDO68316.1 477 KALECYERALG 487
                 8*********9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.4   6.2e+03      18      26 ..     228     236 ..     227     237 .. 0.86
   2 !    9.0   0.0   0.00063       1.6       6      31 ..     254     279 ..     249     281 .. 0.89
   3 ?   -1.2   0.0       1.2     3e+03      10      30 ..     318     338 ..     311     340 .. 0.76
   4 !    6.0   0.1    0.0057        15      17      28 ..     475     486 ..     471     487 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
       TPR_2  18 eeAleafek 26 
                 +eA+  +e+
  CDO68316.1 228 DEARSEYER 236
                 8******98 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00063
       TPR_2   6 nlGlayyklgdyeeAleafekAleld 31 
                  +G++ ++lgd e+Al ++ ++++l+
  CDO68316.1 254 KIGDLNRRLGDTEDALSWWHRSIRLA 279
                 68999******************996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.2
       TPR_2  10 ayyklgdyeeAleafekAlel 30 
                  y+  g++ +A    ekAlel
  CDO68316.1 318 FYATTGQLRQAQTVEEKALEL 338
                 577788888888888899987 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0057
       TPR_2  17 yeeAleafekAl 28 
                 +++Ale++e+Al
  CDO68316.1 475 PAKALECYERAL 486
                 589********8 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.8e-06     0.012     140     196 ..     226     280 ..     178     290 .. 0.87
   2 ?   -2.2   0.0       1.1   2.8e+03     127     170 ..     318     362 ..     310     399 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-06
     DUF2225 140 flkkAlelykeayekesfpvegideatvlYLiaeLerrlgnkeealrwlskvigskk 196
                  l +A   y+++  + s   +g+++a++++ i++L+rrlg++e+al w  + i+  +
  CDO68316.1 226 ALDEARSEYERVWANLSG--QGVQAARIALKIGDLNRRLGDTEDALSWWHRSIRLAA 280
                 567788888888877666..99**************************999887765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
     DUF2225 127 lyrdkedeekeklflkkAlelykeayekesfpve.gideatvlYL 170
                 +y ++++  + ++  +kAlel +   +  sf++  + +++++lY+
  CDO68316.1 318 FYATTGQLRQAQTVEEKALELLRSIPSPRSFESAsPGQALHCLYI 362
                 566666666666666667766666666666655434444444444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1         7   1.8e+04      20      32 ..     182     194 ..     180     195 .. 0.80
   2 ?    3.5   0.0     0.039        99       1      21 [.     249     269 ..     249     279 .. 0.87
   3 ?    2.8   0.0     0.067   1.7e+02       4      30 ..     312     338 ..     309     338 .. 0.87
   4 ?   -2.6   0.0       3.6   9.3e+03       1       9 [.     456     464 ..     456     465 .. 0.85
   5 ?    3.2   0.0     0.049   1.2e+02      19      31 ..     477     489 ..     474     490 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7
                 HHHHHHHHHHHHH CS
       TPR_8  20 Akeyyekaleldp 32 
                 A+e+++ a+e+++
  CDO68316.1 182 AQEFLRIAIEIAE 194
                 7888888999986 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
                 CCHHHHHHHHHHHTT-HHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAk 21 
                 a++ +++g++ + lgd e A 
  CDO68316.1 249 ARIALKIGDLNRRLGDTEDAL 269
                 577789************996 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.067
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                 ++ l+  y ++g++ +A+ + ekalel
  CDO68316.1 312 LVSLSAFYATTGQLRQAQTVEEKALEL 338
                 56677789*****************97 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.6
                 CCHHHHHHH CS
       TPR_8   1 aeayynlgs 9  
                 aea++++g 
  CDO68316.1 456 AEAWNLIGV 464
                 79*****96 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleld 31 
                 +A e+ye+al ++
  CDO68316.1 477 KALECYERALGWA 489
                 89********885 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.06   1.5e+02       6      21 ..     256     271 ..     253     285 .. 0.79
   2 ?    0.3   0.0      0.37   9.5e+02       2      32 ..     312     342 ..     311     346 .. 0.80
   3 ?    4.5   0.0     0.016        42      16      26 ..     476     486 ..     474     494 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.06
       TPR_7   6 arlysrlGdyeeAiel 21 
                 ++l +rlGd+e+A++ 
  CDO68316.1 256 GDLNRRLGDTEDALSW 271
                 666699*******985 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.37
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 L+ L   y   G+ ++A ++ e++L+l ++ 
  CDO68316.1 312 LVSLSAFYATTGQLRQAQTVEEKALELLRSI 342
                 6777788899999999999999999887765 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.016
       TPR_7  16 eeAielyeqsL 26 
                 ++A+e+ye++L
  CDO68316.1 476 AKALECYERAL 486
                 59*******76 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.028        73       7      30 ..     255     278 ..     249     280 .. 0.88
   2 ?   -3.8   0.1       5.4   1.4e+04      25      30 ..     333     338 ..     333     339 .. 0.78
   3 ?   -1.5   0.1         1   2.6e+03       1       9 [.     456     464 ..     456     465 .. 0.88
   4 ?    8.6   0.1   0.00067       1.7      18      28 ..     476     486 ..     471     487 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.028
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                 +G + ++lg+ ++Al    + ++l
  CDO68316.1 255 IGDLNRRLGDTEDALSWWHRSIRL 278
                 6888899**********9999988 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.4
                 HHHHHH CS
       TPR_1  25 ekALel 30 
                 ekALel
  CDO68316.1 333 EKALEL 338
                 689887 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1
                 HHHHHHHHH CS
       TPR_1   1 akalynlGn 9  
                 a+a++ +G+
  CDO68316.1 456 AEAWNLIGV 464
                 89*****97 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHH CS
       TPR_1  18 deAleyyekAL 28 
                  +Ale+ye+AL
  CDO68316.1 476 AKALECYERAL 486
                 79********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3683.08
//
Query:       CDO68317.1  [L=502]
Description: hypothetical protein BN946_scf184799.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3462.30
//
Query:       CDO68318.1  [L=354]
Description: hypothetical protein BN946_scf184799.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.31   11.3   0.0    1.6  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.31      48      75 ..     164     191 ..     156     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
                     TTESEEEE-TTSCCHHHGGSSEE-HHHH CS
  Shikimate_dh_N  48 lglaGlnvTiPfKeaviplldelseeAk 75 
                        +G+  TiP K+++ ++ de+s++A+
      CDO68318.1 164 ASGSGVQATIPAKRKAAEVRDEASSTAA 191
                     56689********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2501.00
//
Query:       CDO68319.1  [L=298]
Description: hypothetical protein BN946_scf184799.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-70  235.6   4.6    8.6e-70  235.3   4.6    1.0  1  LUC7      LUC7 N_terminus
  ------ inclusion threshold ------
      0.084   11.5   0.5       0.11   11.2   0.5    1.2  1  DUF3418   Domain of unknown function (DUF3418)


Domain annotation for each model (and alignments):
>> LUC7  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.3   4.6   9.6e-74   8.6e-70       2     241 ..       7     241 ..       6     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 235.3 bits;  conditional E-value: 9.6e-74
                 XXXXXXXXXXXXXXXXXXXXXXXXXX-EEE--S--SSS-S--SSSS-S-EEEGGGHHHHHHHHHHHHHHHH-XXXXX....XXXXXXXXXXXXXXXXXX CS
        LUC7   2 aaralLdeLmGrnrnlapsekkkkvnfedpevCksylvkfCphdlfinTkadlGpCkkiHdeelkeeYeearkskkk....lgyeeeflrfleklledv 96 
                  +r+lL+++mG +    ++ +  + +++d++vC+++l+++Cph lf+nTk+dlG+C+k H e+lk e+ +ar+ + +    +++++e+  ++  +++++
  CDO68319.1   7 MQRKLLEQMMGPEAMGVSN-A--NLHWSDEKVCRNFLCGTCPHTLFTNTKMDLGACPKSHTERLKTEFLAAREANPNdpifARFQAEYEANIFAFVDEC 102
                 58*********99866555.3..348*********************************************99988778889***************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXX CS
        LUC7  97 drkiqkgkqrleltqeekeeeeeakakkqeqlkeleekiekllaeaeelgeeGkVdeaqklmkeveelkeekeeleqqyeaaaaneeseasqekkmkvC 195
                 dr+i+ +++rle+t ee+ ++++     +++++e+e  i+   +++e lge+GkV+e++  m+ +e lk+ek++ e++ ++   +++s as ++k++vC
  CDO68319.1 103 DRRIRAAHRRLEKTPEENAKTTNL----MREIAEIELAIQGGTEKIETLGEQGKVEESMREMAAIEALKSEKADKERELQQL--TDTSGASGHQKLRVC 195
                 ******************877776....8**************************************************997..899************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......X CS
        LUC7 196 eiCGaflivgDaqqRiedHlmGKqHlGyaklrealeelkekrekek 241
                 ++CGa+l+v D+++R++dH+ GK+HlGy +lr++l ++ke+rek+k
  CDO68319.1 196 DVCGAYLSVLDSDRRLADHFGGKMHLGYHELRNMLVKFKEEREKRK 241
                 *******************************************987 PP

>> DUF3418  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   1.2e-05      0.11     492     539 ..      99     146 ..      66     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.2e-05
     DUF3418 492 LqhlprYlkAielRleklkadparDaeklaeveeleqayaellaklpe 539
                 ++++ r ++A+++Rlek +++ a+ ++ ++e++e+e a++  ++k ++
  CDO68319.1  99 VDECDRRIRAAHRRLEKTPEENAKTTNLMREIAEIELAIQGGTEKIET 146
                 578899*******************************99988885322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2102.81
//
Query:       CDO68320.1  [L=167]
Description: hypothetical protein BN946_scf184799.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1244.37
//
Query:       CDO68321.1  [L=470]
Description: hypothetical protein BN946_scf184799.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-74  250.5   0.0    1.1e-40  139.6   0.0    2.2  2  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    4.8e-10   39.3   0.0    7.1e-10   38.7   0.0    1.3  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0   1.3e-44   1.1e-40       3     144 ..     125     290 ..     123     304 .. 0.90
   2 !  108.8   0.0     3e-35   2.7e-31     202     313 ..     344     464 ..     336     465 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 1.3e-44
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT............T.........EEE....-E- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xx.........xxx....xxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrek...........ek.........eff....aLt 76 
                  e+++++ +l+ rt+++ ++lrlr ++ +a+++y++ ngfi+++tPi++++d+e++++ F +  +             ++         e+f    +Lt
   CDO68321.1 125 EYLRDHCHLRARTREIGAMLRLRDSANTAIHDYFHTNGFIHVHTPIITSNDCEGAGETFRIAPSDPppptaaptpsfPSatssqtapsEYFnhpaYLT 222
                  6788999******************************************************887777776666555511556667777999******* PP

                  S-SHHHHHHHHHCTHSEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  tRNA-synt_2  77 qspqlylellivagidrvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvke 144
                  +s+ql+le+l++a i+rv++++++FRaE+s+t+rhlaEF+++eae++f++  + + +v+e+++++++  
   CDO68321.1 223 VSSQLHLEALAAA-ISRVYTLSPCFRAERSQTSRHLAEFWMLEAEWAFTSSVHdVCDVVEGVLRHVLXX 290
                  *************.***********************************98777**********99865 PP

  == domain 2  score: 108.8 bits;  conditional E-value: 3e-35
                  SEEEEEEEBGGGSTTCBBBSTTS...........TTBBSEEEEEETTE.EEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT--SEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 202 epvfvtdfPaelkpFyarkeedd...........kkltesyDllingv.ElvgGslRiedpeeleeklkskgldeeaeekfswylealeyGapphgGl 287
                    vfvtd+Pa+lkpFy+r ++               +++ +Dll++gv ElvgGslR+e+ ++le+ ++++gld   ++ + wyl++++yG  phgG+
   CDO68321.1 344 XXVFVTDYPASLKPFYMRANDPTsdtrtdgvarpGPTVACFDLLVPGVgELVGGSLREERLDLLEAAIERHGLD---KADYAWYLDLRRYGGAPHGGF 438
                  679****************9988999*******9899*************************************...********************* PP

                  EEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 288 glGldRlvmlllgsesIrdviaFPkl 313
                  glG++Rl+ ++ g es+r+ +a P++
   CDO68321.1 439 GLGFERLISWMSGIESVRECVAMPRW 464
                  *************************9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0     8e-14   7.1e-10       3      76 .]      35     107 ..      33     107 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 8e-14
                      EEEEEEEEEEEEETTEEEEEEEETT..EEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTS..SEEEEEEEEEEE CS
  tRNA_anti-codon   3 vaGrvtsisdrsggkvifidlrDgt..griqvvlfreeatklaenlkeGdvvrvtGrvkrrpgg..elelkveeiell 76 
                      v G+v+si  r+ +kv+f+++ Dg+    +q+v+++     la +l++G  vr +G++k +pg     el+v+e e+l
       CDO68321.1  35 VNGWVKSI--RKQKKVAFAVISDGSsePGLQAVFTD---VTLARRLTNGASVRLRGTLKDSPGTgqAKELQVSEAEVL 107
                      89******..***************5559*******...**********************88778899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3603.32
//
Query:       CDO68322.1  [L=608]
Description: hypothetical protein BN946_scf184799.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-17   62.4   0.1    1.1e-16   60.7   0.0    2.0  2  DnaJ          DnaJ domain
    3.3e-11   43.6   0.1    5.9e-06   26.8   0.0    1.8  2  Ank_2         Ankyrin repeats (3 copies)
    1.2e-06   29.0   0.0    3.6e-06   27.4   0.0    1.8  1  Ank_4         Ankyrin repeats (many copies)
    6.4e-06   26.1   0.0    0.00088   19.6   0.0    2.6  2  Ank_3         Ankyrin repeat
    9.9e-06   25.7   0.0    2.4e-05   24.5   0.0    1.7  1  Ank_5         Ankyrin repeats (many copies)
     0.0084   16.5   0.2      0.045   14.2   0.0    2.2  2  Ank           Ankyrin repeat
  ------ inclusion threshold ------
       0.32   11.0  23.1       0.94    9.4   5.3    2.2  2  TFIIA         Transcription factor IIA, alpha/beta subunit
       0.47    8.9  11.9       0.67    8.4  11.9    1.2  1  Borrelia_P83  Borrelia P83/100 protein
        1.1    8.0   1.6        1.6    7.6   1.6    1.2  1  LMBR1         LMBR1-like membrane protein
        1.2    7.8  15.6          2    7.0  15.6    1.2  1  EVC2_like     Ellis van Creveld protein 2 like protein


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   6.3e-20   1.1e-16       2      59 ..      11      68 ..      10      70 .. 0.95
   2 ?   -2.5   0.0       3.2   5.8e+03      45      59 ..     401     415 ..     397     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 6.3e-20
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekR 59
                 Y++Lg+++ as + +k+ Y++lalk HPDknp+d++a+ +F++++eAy+vL ++  R
  CDO68322.1 11 AYAVLGLDEGASLEVVKSTYKQLALKTHPDKNPGDEDATAQFQRLSEAYNVLLKALDR 68
                7***************************************************887666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
                 HHHHHHHHHTSHHHH CS
        DnaJ  45 eineAyevLsdpekR 59 
                 e+ eA+e L++ + R
  CDO68322.1 401 EMDEAWEALNERTFR 415
                 7889***99987766 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.3e-09   5.9e-06      19      68 ..     296     348 ..     258     362 .. 0.83
   2 !   23.3   0.0   4.1e-08   7.3e-05       1      75 [.     304     394 ..     304     400 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.3e-09
       Ank_2  19 gadpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghlei 68 
                  adp+   +t Lh+Aakng+++++++L +h       ++d +t+ h+A  s+h+ +
  CDO68322.1 296 PADPK---ETLLHIAAKNGDIDMIQWLGSHgadaeeRNSDDKTAFHVALTSKHPAV 348
                 36776...9********************996655555999********9999655 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 4.1e-08
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh...........ad.ndgrtpLhyAarsghleivklLlek 75 
                 Lh+Aakng+ +++++L  +gad++  + ++kta h+A  + +  ++  + e             +   g++ L +A +   +e+v + l+k
  CDO68322.1 304 LHIAAKNGDIDMIQWLGsHGADAEerNsDDKTAFHVALTSKHPAVLLHFFESyppddedyeavYRaPGGKSNLRLALETREPEMVWMILDK 394
                 8999999999999999779999987636999999999999998776555553464444434332256699999999998888999999876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     2e-09   3.6e-06       3      51 ..     302     349 ..     300     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 t+Lh aa+ g+++++++L ++gad  ++ n+++ ta+h A+   ++ +l
  CDO68322.1 302 TLLHIAAKNGDIDMIQWLGSHGADAEER-NSDDKTAFHVALTSKHPAVL 349
                 89**************************.************99988775 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.9e-07   0.00088       3      29 ..     301     326 ..     300     328 .. 0.93
   2 ?    3.9   0.0     0.062   1.1e+02       3      25 ..     334     356 ..     332     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.9e-07
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 et+Lh+Aa++g+++++++L   +gad 
  CDO68322.1 301 ETLLHIAAKNGDIDMIQWLGS-HGADA 326
                 8********************.89996 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.062
       Ank_3   3 etpLhlAarsgnleivkfLlenk 25 
                  t++h+A+ s +++++  ++e +
  CDO68322.1 334 KTAFHVALTSKHPAVLLHFFESY 356
                 69***********9877776645 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.4e-08   2.4e-05      17      56 .]     301     340 ..     293     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +t Lh+Aak+g  d++++L  +gad+  ++s+ +ta+++A
  CDO68322.1 301 ETLLHIAAKNGDIDMIQWLGSHGADAEERNSDDKTAFHVA 340
                 39***********************************998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.5e-05     0.045       4      26 ..     302     325 ..     300     334 .. 0.86
   2 ?   -0.4   0.0       1.1   1.9e+03       2      17 ..     333     348 ..     332     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
                 BHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   4 TPLHlAatngkkriiklLL.hGAn 26 
                 T LH+Aa ng+ ++i++L  hGA+
  CDO68322.1 302 TLLHIAAKNGDIDMIQWLGsHGAD 325
                 99****************999*98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
                 SBBHHHHHHHHTTHHH CS
         Ank   2 GnTPLHlAatngkkri 17 
                   T+ H+A t +++ +
  CDO68322.1 333 DKTAFHVALTSKHPAV 348
                 57*****999888665 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.3   0.00052      0.94     230     325 ..     175     327 ..      24     344 .. 0.51
   2 ?    7.5   9.9     0.002       3.6     137     246 ..     460     568 ..     399     580 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00052
       TFIIA 230 qeqvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidrire...........ealkakelekeskkkkraeessla......... 308
                 q++   +++  +q++ ae  ++e         ++++++ ++++  +r+e++++ +           eal+++  +k+++k+        +         
  CDO68322.1 175 QYSARLRRAREEQEQAAERRARE--------EARRKAELQRQRDRERREAEER-QrvkasakkaeaEALRKSAEQKARAKE--------Qqlqakrskv 256
                 11111111111111111111111........1111111111111111111111.011111111111111111111111111........0111112222 PP

       TFIIA 309 ......................................................dlseilqlDGagddsde 325
                                                                        + +++q  G    + e
  CDO68322.1 257 faasrrkdfatvkkgvyeenvdaaggelrkggeafvknppadpketllhiaaknGDIDMIQWLGSHGADAE 327
                 33333333444444444555555556666666666666666666666666666556667777776666665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.002
       TFIIA 137 asgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqq.lekq.........qqqqqqqqqqqqqqqvqqqqqeesqq 224
                  + + y+   q++++qq  +qp   +v   + + + ss+a+++++ ++q+ ++a p+++    +         +    q+ +q qqq +qq    +s++
  CDO68322.1 460 NE-HDYQ---QQRQGQQKGKQPHRPTV---EVEESRSSTASPTSSgPPQTPSTASPSSApP--RpyrgkgnrgR--PFQPRHQYQQQDQQQ----QSSA 543
                 11.2232...33333333333333332...2333334444444444677777777777722..13455543220..222222222221111....2223 PP

       TFIIA 225 aqqa..sqeqvag..sqvessqtdga 246
                 ++++  +  +v+   + +  +q++g+
  CDO68322.1 544 PRTPdvP-AEVPYtnGTSGEQQQQGS 568
                 3333211.122222123333333333 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  11.9   0.00038      0.67     204     280 ..     191     270 ..     132     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00038
  Borrelia_P83 204 keresqedakraqvlkeeldkkqkdadkakk.kadtaednadkqrkevreklqe..aknlpepadvsskkedkkvaeekk 280
                    er ++e+a+r+  l+++ d++ ++a++ ++ ka  ++++a+  rk +++k ++  ++   ++++v  +   k  a  kk
    CDO68322.1 191 AERRAREEARRKAELQRQRDRERREAEERQRvKASAKKAEAEALRKSAEQKARAkeQQLQAKRSKVFAASRRKDFATVKK 270
                   58889999999999999999999888776543888888899999999999877642334455566666666666653333 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.6   0.00088       1.6     244     327 ..     162     255 ..      81     270 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00088
       LMBR1 244 rkyleeilkkvPeeiaeklks...nenkteeslaklekqlika......lqkrertekqwkrllekalelediiknksskekefksses.srrg 327
                 r   e i  ++Pe+++ +l++   ++++++e+ a++e + + +      +++re +e+q  ++  k +e e++ k++++k ++ +++ + +r++
  CDO68322.1 162 RFTREPITPETPEQYSARLRRareEQEQAAERRAREEARRKAElqrqrdRERREAEERQRVKASAKKAEAEALRKSAEQKARAKEQQLQaKRSK 255
                 3333445559999999999998773333444555554333333111111333333344433344444566666666666666666666633333 PP

>> EVC2_like  Ellis van Creveld protein 2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  15.6    0.0011         2     188     270 ..     171     252 ..     168     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
   EVC2_like 188 elsrqvekrlssvfkkqllalekelkeeyerkmvaLaaecnletrekleaehkkeeaekeeaeellkkasekellelssLLdk 270
                 e+++q ++rl+ + ++q  a+e++  ee  r+ ++L+ + ++e+re  e ++ k  a+k+eae+l k+a++k++++ ++L  k
  CDO68322.1 171 ETPEQYSARLRRAREEQEQAAERRAREEA-RRKAELQRQRDRERREAEERQRVKASAKKAEAEALRKSAEQKARAKEQQLQAK 252
                 5678999*****************77775.66689*************************************99998888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2420  (0.134977); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.49
# Mc/sec: 3708.41
//
Query:       CDO68323.1  [L=493]
Description: hypothetical protein BN946_scf184799.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-45  155.9   0.2    1.5e-45  155.5   0.2    1.2  1  BCS1_N           BCS1 N terminal
      2e-18   67.1   0.0    4.4e-18   66.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
    0.00023   21.6   0.0    0.00095   19.6   0.0    2.2  1  AAA_16           AAA ATPase domain
     0.0015   18.7   0.0     0.0041   17.3   0.0    1.8  1  AAA_33           AAA domain
     0.0024   17.1   0.0     0.0039   16.4   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
     0.0075   16.0   0.0      0.017   14.9   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
     0.0092   16.5   0.0       0.03   14.9   0.0    1.9  2  AAA_18           AAA domain
     0.0092   15.6   0.0       0.03   13.9   0.0    1.8  1  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.023   15.0   0.0       0.11   12.8   0.0    2.3  2  AAA_22           AAA domain
       0.03   13.8   0.0      0.056   13.0   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.033   14.1   0.0       0.39   10.6   0.0    2.2  2  Rad17            Rad17 P-loop domain
      0.036   14.0   0.0      0.077   13.0   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
      0.037   14.5   0.0      0.073   13.6   0.0    1.5  1  ABC_tran         ABC transporter
      0.039   14.3   0.0      0.095   13.1   0.0    1.7  1  RNA_helicase     RNA helicase
      0.078   12.8   0.0       0.13   12.1   0.0    1.3  1  AAA_11           AAA domain
      0.095   12.4   0.0       0.18   11.5   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
       0.13   11.6   0.0        0.6    9.4   0.0    1.9  2  ATPase           KaiC
       0.13   11.9   0.0       0.21   11.3   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.2   1.5e-48   1.5e-45       1     187 []      60     245 ..      60     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 1.5e-48
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaq.................pasrrsrelsvetrtksrssdssaeedededeeedg 82 
                 lg+ l+++rr+l+  a+++rr++lvs+e +++D+ayd++l+W+++q                 p + rs++l v+t  ++r+               +g
  CDO68323.1  60 LGVGLTVLRRGLTLSAAALRRQMLVSLEMNNKDPAYDYFLTWMAHQsgrteaggapwykmissPTWMRSHQLGVQTLHEQRK---------------NG 143
                 6899*************************************************************************99996...............23 PP

      BCS1_N  83 kkkkplrylPavgtthlfrykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraaagsggeWrrvas.Rp 180
                 +++  ++++ a+g th++ry++ +++++Rere+k+ +++tg p+et+t+t+l r+r+++ eLl+ear+lal+ qegk vi  ++   g eW+++++ R+
  CDO68323.1 144 SSSVMFKLVAAPG-THYLRYHKVWMQIKRERETKAPNLMTGMPWETITITTLFRDRDVFTELLSEARDLALRGQEGKLVINIPW---GLEWKPFGQpRR 238
                 34779********.7*********************************************************************...************ PP

      BCS1_N 181 kRplstV 187
                 kRpl++V
  CDO68323.1 239 KRPLKSV 245
                 ******9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   4.4e-21   4.4e-18       2     130 ..     281     403 ..     280     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 4.4e-21
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkk 98 
                 ll+GppG GK+++++a+a el+ +++ +++se        + +k+ +l+++  e    s ++i++ida +++r  ++++  +++ + + +l++ldgv +
  CDO68323.1 281 LLHGPPGSGKSSFIQALAGELNYDICVLNLSERG-----LADDKLIHLLANTPER---SFVLIEDIDAAFNKRvqTSADGYQSSVTFSGFLNALDGVAS 371
                 9************************999999987.....6777777888665544...7**************9766788889999************* PP

                 SSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  99 keskvivigatnrpdkldpallr.gRfdrkiei 130
                  e+  i+ ++tn+p++ldpal+r gR+d  + i
  CDO68323.1 372 GEE-RIIFMTTNHPERLDPALIRpGRVDLAVLI 403
                 755.99999******************987665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.5e-07   0.00095      24      52 ..     275     317 ..     263     475 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.5e-07
      AAA_16  24 p..elvllsGesGvGKsslvrellralekd............g 52 
                 p  +  ll+G++G+GKss +++l+ +l+ d            +
  CDO68323.1 275 PyrRGYLLHGPPGSGKSSFIQALAGELNYDicvlnlserglaD 317
                 455889******************9999994444333333330 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.2e-06    0.0041       3      31 ..     281     311 ..     280     383 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.2e-06
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssd 31 
                 ll+G+pGsGKs +++ l+ +l    ++l+  
  CDO68323.1 281 LLHGPPGSGKSSFIQALAGELNydICVLNLS 311
                 69*******************9886666654 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.9e-06    0.0039      56     119 ..     280     343 ..     254     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.9e-06
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDDL..sFe 119
                  LL G  G+GKSs ++al  e++ + + +++++++ l++ +kl++ll+++per  +++ D+  +F+
  CDO68323.1 280 YLLHGPPGSGKSSFIQALAGELNYD-ICVLNLSERGLAD-DKLIHLLANTPERSFVLIEDIdaAFN 343
                 59******************99865.789999***9998.89999999999998887777522565 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-05     0.017      19      42 ..     276     297 ..     266     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
      AAA_29  19 idlkgatlltGpsGsGKSTllDAi 42 
                  + +g +ll Gp GsGKS+++ A+
  CDO68323.1 276 YR-RG-YLLHGPPGSGKSSFIQAL 297
                 44.66.9**************997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.6   9.5e+03      71     100 ..     140     168 ..     127     172 .. 0.72
   2 !   14.9   0.0     3e-05      0.03       3      34 ..     282     312 ..     281     393 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.6
      AAA_18  71 leegknlvidghlaeleseaakdikkvvLt 100
                 + +g++ v+  ++a +  ++++ +k v+++
  CDO68323.1 140 RKNGSSSVMFKLVAAPGTHYLRYHK-VWMQ 168
                 4578888999999999999888776.8776 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...gvnlrdvake 34 
                 l G+pG+GK+++ ++L+ +l++   + nl    +e
  CDO68323.1 282 LHGPPGSGKSSFIQALAGELNYdicVLNL----SE 312
                 78**************9998776663332....22 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.1e-05      0.03      14      56 ..     258     300 ..     251     394 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
      AAA_25  14 dlaapppprrwlvkgllpagelallaGapgtGKttlaldlala 56 
                 d++a +++r+w+ ++ +p     ll G+pg+GK+ +   la +
  CDO68323.1 258 DVEAFLQRRQWYADRGIPYRRGYLLHGPPGSGKSSFIQALAGE 300
                 6778899*******999*******************9999854 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   2.2e+03      15      71 ..      61     121 ..      60     171 .. 0.64
   2 ?   12.8   0.0   0.00011      0.11       8      30 ..     280     302 ..     275     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
      AAA_22  15 GtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelka........e 71 
                 G+G T+l r l+ ++     a+ +r  +v+ +++++    + +l++++++ g+   +        +
  CDO68323.1  61 GVGLTVLRRGLTLSA-----AALRRQMLVSLEMNNKDpAYDYFLTWMAHQSGRTEAGgapwykmiS 121
                 677777777777776.....3445666667777777755666677777777765555555555540 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00011
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                  +++G++G+GK+  ++ l+ +l+
  CDO68323.1 280 YLLHGPPGSGKSSFIQALAGELN 302
                 689***************99984 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.6e-05     0.056      22      71 ..     266     312 ..     263     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-05
       AAA_7  22 ysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                  ++  +  +  ++  ll Gp G+GK++ i+ l  +l+   y + ++n+s 
  CDO68323.1 266 RQWYADRGIPYRRGYLLHGPPGSGKSSFIQALAGELN---YDICVLNLSE 312
                 56777888889999*******************9999...7777777775 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00039      0.39      47      73 ..     279     305 ..     253     313 .. 0.84
   2 ?    0.7   0.0      0.42   4.2e+02     132     151 ..     329     348 ..     315     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
       Rad17  47 iLLisGPsGCgkstvvkvLskelgikl 73 
                   L+ GP+G gks  ++ L+ el +++
  CDO68323.1 279 GYLLHGPPGSGKSSFIQALAGELNYDI 305
                 5799*****************998865 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
       Rad17 132 dkklilvedlPnkfyrdsda 151
                 +++++l+ed+   f++ +++
  CDO68323.1 329 ERSFVLIEDIDAAFNKRVQT 348
                 789***********987765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.8e-05     0.077       3      34 ..     281     312 ..     279     382 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.8e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltr 34 
                 lL GppG+gKs++++ la  ln  + + +l++
  CDO68323.1 281 LLHGPPGSGKSSFIQALAGELNYDICVLNLSE 312
                 89****************99998887777765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.4e-05     0.073      14      37 ..     280     303 ..     272     367 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-05
                 EEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp 37 
                 + + G+ G+GKS+++++lag+l+ 
  CDO68323.1 280 YLLHGPPGSGKSSFIQALAGELNY 303
                 6799****************9875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.5e-05     0.095       2      26 ..     281     305 ..     280     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.5e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +l+Gp+g GKS++++ La +l  ++
    CDO68323.1 281 LLHGPPGSGKSSFIQALAGELNYDI 305
                   68****************9998766 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.13      20      42 ..     280     302 ..     262     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                  l++GPPG+gK+++i +l  +l+
  CDO68323.1 280 YLLHGPPGSGKSSFIQALAGELN 302
                 69***************999995 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.18      36      93 ..     280     338 ..     238     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvlek.agdlaalltnleekdvlfidei 93 
                  ll+GpPG Gk+++ + +a el+ ++ +            l+ ll+n  e+  ++i++i
  CDO68323.1 280 YLLHGPPGSGKSSFIQALAGELNYDICVLNLSERGLaDDKLIHLLANTPERSFVLIEDI 338
                 59*********************998765433333203457777777777777777776 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0006       0.6      13      36 ..     271     294 ..     249     300 .. 0.85
   2 ?   -0.7   0.0      0.76   7.6e+02     101     148 ..     434     483 ..     422     488 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0006
      ATPase  13 kgGipegrvvlitGepGtGKtifa 36 
                 ++Gip +r +l+ G pG+GK+ f 
  CDO68323.1 271 DRGIPYRRGYLLHGPPGSGKSSFI 294
                 48*******************886 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.76
      ATPase 101 kedleelieelaeaikeika..krvviDsitglayeekeavaReilrqlv 148
                 +e+le +++e+++++ke  a  +r+ +  ++gl  ++++  a +++r+l+
  CDO68323.1 434 EEELERMADEMEKIVKEEAAsgRRISMAALQGLFIRSSARDAVKEVRTLF 483
                 67889999999999999888778888888888855555555555555554 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00021      0.21       2      21 ..     281     300 ..     280     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      + hG pG+GKS+ i+ l+ +
       CDO68323.1 281 LLHGPPGSGKSSFIQALAGE 300
                      579**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3262.64
//
Query:       CDO68324.1  [L=268]
Description: hypothetical protein BN946_scf184799.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-10   39.5   1.7    1.2e-09   38.8   1.7    1.4  1  WBS_methylT      Methyltransferase involved in Williams-Beure
      8e-10   39.2   0.0    1.9e-09   38.1   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    5.9e-09   36.5   0.0    1.5e-08   35.2   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
    4.5e-06   27.3   0.2    1.5e-05   25.6   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    4.2e-05   23.4   0.0    6.3e-05   22.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
     0.0017   18.2   0.0      0.003   17.3   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
     0.0047   17.2   0.0     0.0089   16.4   0.0    1.5  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase


Domain annotation for each model (and alignments):
>> WBS_methylT  Methyltransferase involved in Williams-Beuren syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   1.7   4.7e-13   1.2e-09       1      61 [.     202     261 ..     202     263 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 4.7e-13
  WBS_methylT   1 LfaG..kseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkr.kkkkkkavksreWilkKKer 61 
                  Lf+G   ++qqqlpkgl++d+e+e     + ++ekrr++ ++r k++k+k+ k+r+WilkKKe 
   CDO68324.1 202 LFVGggGGAQQQLPKGLEGDEEAE----ARAQFEKRRERLRSReKSGKRKNIKDRDWILKKKEV 261
                  677767889********9999654....6789999999888776889999999*********96 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   7.3e-13   1.9e-09       1      75 [.      54     127 ..      54     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 7.3e-13
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-..C CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhv..e 75 
                      Ld+GcG+G+  e l + g++ vg+D+++ ml++a e+ +e +l      +d+ + + f+ +sfD  +s +v++++  +
       CDO68324.1  54 LDIGCGSGLSGEILDEEGYHWVGCDIAPSMLEVALEREVEGDL----FLQDIGQgFGFRPGSFDGAISISVIQWLlnA 127
                      8*********************************999999875....778888758******************9641 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.8   1.7e+04      44      56 ..      24      36 ..      18      45 .. 0.63
   2 !   35.2   0.0     6e-12   1.5e-08       2      77 ..      54     124 ..      53     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.8
                     TTTTEEEEESBCC CS
  Methyltransf_25 44 eglnvefvqgdae 56
                     ++ +v+ +q+d++
       CDO68324.1 24 NNTRVQQIQADMT 36
                     4457777777774 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 6e-12
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhl 77 
                      Ld+GcG+G   + l +++  ++++g+Di+++mle a er     ++ ++  +d+ + + f  gsfD  +s+ ++++l
       CDO68324.1  54 LDIGCGSGLSGEILDEEG--YHWVGCDIAPSMLEVALERE----VEGDLFLQDIgQGFGFRPGSFDGAISISVIQWL 124
                      9**************995..*****************999....7778888888577*************8778864 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     6e-09   1.5e-05       1      79 [.      54     124 ..      54     153 .. 0.79
   2 ?   -3.4   0.1       6.6   1.7e+04      33      45 ..     230     242 ..     225     256 .. 0.59

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhl 79 
                      L+iGcG+G   + l e+  + + +g+Di ps++e a e+  + +        l+ +d+++ +g   +sfD  ++++v+++l
       CDO68324.1  54 LDIGCGSGLSGEILDEE--GYHWVGCDIAPSMLEVALEREVEGD--------LFLQDIGQGFGFrpGSFDGAISISVIQWL 124
                      8*******999999999..**************77777766655........44455555555555799999999999998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.6
  Methyltransf_12  33 iedakeklakren 45 
                      +e+++e+l++re+
       CDO68324.1 230 FEKRRERLRSREK 242
                      4566777766664 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.4e-08   6.3e-05      14     135 ..      44     177 ..      28     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.4e-08
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae..kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp...... 99 
                      + l+   ++++ +LdiGcG+G   e+l e+g++ +g D+ p + e a   +     + q   q   +  g+fd ++++ v+ ++ + +      
       CDO68324.1  44 N-LP--PDQPAFLLDIGCGSGLSGEILDEEGYHWVGCDIAPSMLEVALerEVEGDLFLQDIGQGFGFRPGSFDGAISISVIQWLLNAEtshpts 134
                      2.33..689999*****************************99998744433333333333334455777999999999999999977788899 PP

  Methyltransf_23 100 .......ellrqiatllkpgGylllseplaslkedrllldwly 135
                             + ++++++ lk   +++l+ + +s+ + +l+ ++++
       CDO68324.1 135 spphrltRFFTTLHAALKNPSRAVLQFYPSSDDQIQLITSIAM 177
                      9999999999999999998888888888777777777777666 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06     0.003       7      81 ..      53     118 ..      47     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsn 81 
                      +lD+GCG+G  +  l ee   + + vG Di + ++e+A e+      +   +  +di + +   + + +fD  +s 
       CDO68324.1  53 LLDIGCGSGLSGEILDEE---GYHWVGCDIAPSMLEVALEREV----E-GDLFLQDIGQgFG--FRPGSFDGAISI 118
                      79******9888888855...579**************99732....2.2334556666566..666666665555 PP

>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06    0.0089      60      89 ..      51      80 ..      39     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.5e-06
  AdoMet_MTase 60 tsfvdvgcgngllvyvlaaegykgygidlr 89
                    + d+gcg gl   +l  egy+  g d+ 
    CDO68324.1 51 AFLLDIGCGSGLSGEILDEEGYHWVGCDIA 80
                  4568***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1796.63
//
Query:       CDO68325.1  [L=1073]
Description: hypothetical protein BN946_scf184799.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 6587.78
//
Query:       CDO68326.1  [L=209]
Description: hypothetical protein BN946_scf184799.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-37  127.4   0.0    4.5e-37  127.0   0.0    1.1  1  TRAPP     Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.0   2.5e-41   4.5e-37       1     145 [.      28     194 ..      28     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 2.5e-41
       TRAPP   1 fafllgelvsylqrdskdveevekrLekmGyrvGlrllelllarer.pretdilevlkfickdlWkllfgkqidnlk..................tnhr 80 
                 fa+++g+lv +l++d++d++ev+k+LekmGy++G+rl+e++lar+   r  d++ev ++++k+++k+++++++++++                   n+ 
  CDO68326.1  28 FALTYGALVVQLVQDYEDYAEVNKQLEKMGYNIGTRLIEDFLARSGlGRCADFREVGEVVAKVGFKSFLNITPTVTHgalppassptrssmppsqANAP 126
                 799*****************************************988899**********************************999999997766666 PP

       TRAPP  81 ge.yvltdnefpltrfvelpke.ls....ylaflcGiirGaLenlgfpakVtahelpsdelrgrttfeikv 145
                 g+ ++l+  e pl++fvelp+e l+    ++++lcG+irGaLe+++++  V+a ++ sd+lrg++t+ei+v
  CDO68326.1 127 GTsFTLQFDENPLAEFVELPEEaLEgglwFSNVLCGVIRGALEMVQMQ--VQA-TFVSDVLRGDETTEIRV 194
                 66888877777**********98557888*******************..999.66688**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1509.00
//
Query:       CDO68327.1  [L=162]
Description: hypothetical protein BN946_scf184799.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-20   73.7   0.0    7.8e-11   42.5   0.2    2.0  2  Ribosomal_S13  Ribosomal protein S13/S18
     0.0033   16.2   0.1     0.0085   14.9   0.0    1.6  2  FbpA           Fibronectin-binding protein A N-terminus (FbpA


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   9.8e-11   8.8e-07       2      62 ..       3      63 ..       2      70 .. 0.93
   2 !   42.5   0.2   8.7e-15   7.8e-11      81     128 .]     104     151 ..      86     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 9.8e-11
  Ribosomal_S13  2 ilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenka 62
                   +lg+++++++ v+ al++ +GiG ++a  +++++++ e+ r++ l++ ++  ++  ++ +a
     CDO68327.1  3 LLGVRLPDNHFVKHALKQFYGIGDKTALRLCARVQIHERCRVRHLNQSQVTALTAFLSSPA 63
                   6899************************************************999988765 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 8.7e-15
  Ribosomal_S13  81 dshvvendlrrklredieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                     + ++e+dlrr++re+i  +++i+sy G RH   l+vRGQrT++++ t
     CDO68327.1 104 REIKIESDLRRQMRENIAHQRNIGSYVGRRHAMHLPVRGQRTRSNAQT 151
                    56789****************************************986 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.5e-07    0.0085     185     236 ..       9      60 ..       2      74 .. 0.87
   2 ?   -1.2   0.0     0.073   6.5e+02     157     193 ..      77     116 ..      69     136 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.5e-07
                 S.XXXHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHH CS
        FbpA 185 kekdlvkaLvkafqGlspllaeelleragldketsakelseedlerlyealq 236
                 ++++ vk  +k+f G++  +a  l++r+++ ++ ++++l+++++++l + l+
  CDO68327.1   9 PDNHFVKHALKQFYGIGDKTALRLCARVQIHERCRVRHLNQSQVTALTAFLS 60 
                 66777888889999*******************************9988766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.073
                 BXXXSXXXSXBXTTSXXH.H.HHHHHHHH..S.XXXHHHH CS
        FbpA 157 kYelPpsqdklnPleaeele.efkellsk..kekdlvkaL 193
                 +Y++Pp ++ + P ++ e e    + l++   e dl++++
  CDO68327.1  77 NYVPPPLSQPVPPPTLREGEkLPADTLREikIESDLRRQM 116
                 5888888777777766655523333333344334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1246.79
//
Query:       CDO68328.1  [L=319]
Description: hypothetical protein BN946_scf184799.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-88  294.5   2.6      8e-88  294.5   2.6    2.7  2  XAP5           XAP5, circadian clock regulator
  ------ inclusion threshold ------
       0.07   13.1   0.0       0.16   12.0   0.0    1.6  1  RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
        4.2    7.4  10.1         12    5.9  10.1    1.8  1  DUF1043        Protein of unknown function (DUF1043)


Domain annotation for each model (and alignments):
>> XAP5  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.9  15.7         3   1.8e+04      25      99 ..      17      99 ..       2     101 .. 0.50
   2 !  294.5   2.6   1.3e-91     8e-88       1     248 [.      99     317 ..      99     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: -5.9 bits;  conditional E-value: 3
        XAP5 25 kakkkeeeekkeesekkeekekeeeeee.............kkkkkkkpnvdtsflpkaldkereekeaaereeLrkeflalqeavka 99
                + ++ ++e ++++++  +e+ek     +              +++ k+ +v +  l    +++re +ea++re+ r   l+ ++++k+
  CDO68328.1 17 QREQMRQEFERQKQTLIQETEK-----SrpstnrfvgqndsMEDTLKQSTVGLVRLEEFQQRRRELEEAKAREAARTSELKDEKKLKK 99
                2222222222222111111111.....1112223444332223333777777777778888999999999999999999988888887 PP

  == domain 2  score: 294.5 bits;  conditional E-value: 1.3e-91
        XAP5   1 kkkkkkkskLSFgdddeeeeeeeekakkkeeeekkeesekkeekekeeeeeekkkkkkkpnvdtsflpkaldkereekeaaereeLrkeflalqeavka 99 
                 k+kk++k++LSF+ ddee +e+       + ++ +e   ++e         +k+k++k+p+vdtsflp   d+eree+e++ere+Lr+e+l++qe++k+
  CDO68328.1  99 KRKKTNKATLSFALDDEEGDES------GSPSQGAEG--NGEP------PVKKAKSRKNPEVDTSFLP---DREREEAERREREALRQEWLRKQEELKN 180
                 799*********8787777733......111111111..2222......223456789**********...**************************** PP

        XAP5 100 eeieitfvfydGsnirrpgGvvrvkkgdtiwlfLdkarkeklrkerrelarvsvddLmlvkedlIiPhhyefYdfivnkargksgpLF..dvsedvrek 196
                 ee+ei ++++dGs++r++   v++kkgdti +fL+k+r     +++ el+ +svd+Lm++kedlIiPhh++fYdfi+nkargksgpLF  dv++dvr  
  CDO68328.1 181 EEVEIVYSYWDGSGHRKS---VTCKKGDTISTFLEKCR-----QQFPELRGISVDNLMYIKEDLIIPHHHTFYDFIINKARGKSGPLFnfDVHDDVR-- 269
                 ***************999...****************8.....68****************************************************.. PP

        XAP5 197 kseekisdlegekddshatKvvdrrWYernKHifPasrWeefdpekdyekev 248
                       +d+++ekd+sha+Kvv+r+WY+rnKHifPasrWe +dp+k+y k++
  CDO68328.1 270 ----LLADATVEKDESHAGKVVERSWYNRNKHIFPASRWEVYDPDKNYGKYT 317
                 ....9********************************************997 PP

>> RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.16       4      73 ..     148     220 ..     146     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                    TTTS----HHHHHHHHHHHHHTT-EEEEEEE-GGGT..T-S--EEES.---TT---HHHHHHHHHHHHHHSTT CS
  RuBisCO_small   4 fsylpdltdeeiakqveyllsqgwapaiEfedkeka..rnryWtmwk.lpmfdlkdaaevlaeleecrkaype 73 
                     s+lpd  +ee ++  + +l+q+w    E  ++e++    +yW+  +    + +k+ +++ + le+cr+++pe
     CDO68328.1 148 TSFLPDREREEAERREREALRQEWLRKQEELKNEEVeiVYSYWDGSGhRKSVTCKKGDTISTFLEKCRQQFPE 220
                    59***********************9999877766622567888543145799******************97 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.1     0.002        12      18     102 ..       3      88 ..       1     111 [. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.002
     DUF1043  18 ltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeLlp.eleeqelfqqkkleekkaeae 102
                 + +++ ++++ l+k+ e+ ++e+e+qkq l +  ++s+   +++  + + + + l++s+  L+  e+ +q+    ++ ++ +a+++
  CDO68328.1   3 TSKAEGRREEALAKQREQMRQEFERQKQTLIQETEKSRPSTNRFVGQNDSMEDTLKQSTVGLVRlEEFQQRRRELEEAKAREAART 88 
                 5667788999****************************************************653333333333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2227  (0.124212); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2042.75
//
Query:       CDO68329.1  [L=239]
Description: hypothetical protein BN946_scf184799.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-73  245.2   2.6    6.3e-73  244.8   2.6    1.1  1  ATP-synt_D  ATP synthase subunit D


Domain annotation for each model (and alignments):
>> ATP-synt_D  ATP synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.8   2.6   3.5e-77   6.3e-73       2     195 ..       3     193 ..       2     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.8 bits;  conditional E-value: 3.5e-77
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTST.TSTSHHHHHHHSSS.SS-..TSS-SEEEEEEBTTSEEEEEE CS
  ATP-synt_D   2 LirlkkrlklaqrghslLkkKrdaLilefreilkelkelreeleeelkeayfslaea.faaggeediesavlesvklakvvkvelktenvaGVkvpvfe 99 
                 L++ k rlk+aq ghslL kKrdaL+ +fr+il++++e++++++++++ a+fslae+ +a+g   di+++v+e++k a+  kv++k+env GV +p+fe
  CDO68329.1   3 LTNTKLRLKGAQTGHSLLAKKRDALTTRFRAILRRVDEAKRKMGRVMQLASFSLAEVtYATG---DISYLVQEQAKSAS-FKVKAKQENVSGVVLPAFE 97 
                 8999*****************************************************99999...**********9999.******************* PP

                 E-..S.SSTSSSSSSSSTCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_D 100 leeeksdstelygllrtgaqldeavealrellellvelasletslelLdeeikktnrRvNaLekvvIPrleetikyIkseLdEqereeffrlkkvk 195
                 +++ + ++++l+gl+r+g+q+ +a+e +++++e+lv+lasl+t++++Lde+i+ tnrRvNa+e+vvIPrle+tikyI+seLdE++reeffrlkkv+
  CDO68329.1  98 VDRVSGSDFNLTGLGRGGQQVLRAKEVYAKAVETLVDLASLQTAFMILDEVIRATNRRVNAIEHVVIPRLENTIKYITSELDEMDREEFFRLKKVQ 193
                 *999999****************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1709.87
//
Query:       CDO68330.1  [L=158]
Description: hypothetical protein BN946_scf184799.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-38  129.2   5.4    9.1e-38  128.6   5.4    1.3  1  Ribosomal_L26  Ribosomal proteins L26 eukaryotic, L24P archae
    4.1e-09   36.1   6.9    5.5e-09   35.7   4.2    2.3  2  KOW            KOW motif


Domain annotation for each model (and alignments):
>> Ribosomal_L26  Ribosomal proteins L26 eukaryotic, L24P archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   5.4     1e-41   9.1e-38       1      82 []       8     121 ..       8     121 .. 1.00

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 1e-41
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxx RF
  Ribosomal_L26   1 sssrrkqrKahfnapshirrklmsapLskeLrekygvrslpir................................gvtrekangttvpvgihpSkv 64 
                    sssrrk+rKahf+aps++rrk+ms++LskeLr+ky++rs+pir                                +v+r+k+ng++vp+gihpSkv
     CDO68330.1   8 SSSRRKSRKAHFSAPSSVRRKIMSSSLSKELRAKYNTRSIPIRkddevrivrgkykgregkvtqvyrkkwvihvdRVQRDKSNGASVPIGIHPSKV 103
                    89********************************************************************************************** PP

                    xxxxxxxxxxxxxxxxxx RF
  Ribosomal_L26  65 vItklklDkdrkkiLerk 82 
                    v+++lklDkdr++iLerk
     CDO68330.1 104 VVINLKLDKDRRAILERK 121
                    *****************9 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   4.2   6.1e-13   5.5e-09       1      32 []      51      82 ..      51      85 .. 0.94
   2 ?    0.3   0.0     0.085   7.6e+02      12      26 ..     111     125 ..     111     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 6.1e-13
                TTSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                ++d+V++v+G++kG++GkV++v+++k  ++vd
  CDO68330.1 51 KDDEVRIVRGKYKGREGKVTQVYRKKWVIHVD 82
                69************************888887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.085
                 TTTCEEEEEEEETTT CS
         KOW  12 hkGktGkVvkvdqhk 26 
                 +k++ ++ ++ d++k
  CDO68330.1 111 DKDRRAILERKDRKK 125
                 58999999999*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1140.50
//
Query:       CDO68331.1  [L=283]
Description: hypothetical protein BN946_scf184799.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-28   98.7   0.2    6.1e-28   97.8   0.2    1.4  1  FRG1      FRG1-like domain
     0.0044   17.2   0.0      0.008   16.4   0.0    1.5  1  Fascin    Fascin domain


Domain annotation for each model (and alignments):
>> FRG1  FRG1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.2   6.8e-32   6.1e-28      22     191 .]     104     282 ..      94     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 6.8e-32
        FRG1  22 egPdPeevftavkvasdekislKsgy..GkYlgvdkegilsaraeAisseEqfev.vfeegktallalaketflsvdeekd....ivakskkaaeee.. 111
                 e+ d  +v+++++va+ + i l++g   Gk++++dk+gi+sa  eA +++E++++ vf +g++a++    e++lsvde       +   s++++  e  
  CDO68331.1 104 EPTDVSQVWVVTRVAGASTINLRTGVgeGKFISCDKHGIVSADREARGPQEEWTPvVFPDGMVAFQN-VYEKYLSVDEVAGgqlaLRGDSEEVGFRErf 201
                 667789*****************975227************************9757999******9.8899*****9765555566778888766622 PP

        FRG1 112 vveiRsdaeregktkdrirvedreklre.keskyvkkfqkiqdkklrldkedvkrlkkarkeGnlhEvlLDrrvkmksDky 191
                  v+i s+ ++e + + + r+e   +     e++  k++q ++  +  + + d+k+lkka+keG+l E+lLDrr k ksD++
  CDO68331.1 202 WVKIQSKYKKEAHDEEKKRKEGLIDTSSlDEVSTSKMYQAWGAGRTVVPSGDKKELKKAKKEGRLAEALLDRRAKLKSDRF 282
                 578888888877777777777776665415788899********************************************9 PP

>> Fascin  Fascin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.9e-07     0.008      23      91 ..     108     179 ..      84     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.9e-07
                 GGGEEEEEEETTSEEEEEEET..TSEEEEE-TTSBEEEEESS--GGGEEE.EEEETCEEEEEETTSCEEEEC CS
      Fascin  23 kkqlftLefdeesyavaLrsh..ngkYlsldkdGrvvaeaetkeedtlFe.lefrgrwallresngryLgig 91 
                   q++ ++   +++++ Lr+   +gk++s+dk+G v a++e + ++  ++ + f ++ ++++++  +yL+++
  CDO68331.1 108 VSQVWVVTRVAGASTINLRTGvgEGKFISCDKHGIVSADREARGPQEEWTpVVFPDGMVAFQNVYEKYLSVD 179
                 34999999999999999*9753379****************99999999845566**************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1953.42
//
Query:       CDO68332.1  [L=1194]
Description: hypothetical protein BN946_scf184799.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-27   97.0   2.0    3.2e-27   95.7   2.0    1.7  1  UCH            Ubiquitin carboxyl-terminal hydrolase
    8.2e-17   61.8   1.9    1.4e-16   61.0   1.9    1.3  1  UCH_1          Ubiquitin carboxyl-terminal hydrolase
    6.9e-07   29.8   0.0    0.00027   21.5   0.0    2.9  2  DUSP           DUSP domain
    6.4e-06   25.8   0.1    1.4e-05   24.8   0.1    1.5  1  ubiquitin      Ubiquitin family
  ------ inclusion threshold ------
        3.9    7.7   4.8         42    4.4   0.1    3.0  3  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (
          9    6.6   8.3       0.34   11.2   0.3    2.9  3  DUF2757        Protein of unknown function (DUF2757)


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   2.0   1.1e-30   3.2e-27      60     244 ..     216     460 ..     187     536 .. 0.85

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.1e-30
                 HHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
         UCH  60 alkdlfkellkskskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks............. 145
                 +l+  f++++ s+ + ++P kl+++l+     ++  +qqDaqEf +  ++ l+ ++++        +++ + +sli + feg+l               
  CDO68332.1 216 QLQVTFAAMQCSTLNVFNPVKLVESLK-----LRATEQQDAQEFSKLFMAHLDTEFKK--------QQDAELQSLIANQFEGKLVYntvcqkclrrser 301
                 677778888866778888877777775.....44666*********************........7889999999999999998889999******** PP

                 .................................................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-B CS
                 .................................................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 146 .................................................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeek 192
                                                                   ++l +lP++L+++l Rf y+ +   ++K+++++ fp+++d++++l   +
  CDO68332.1 302 dsdfleievnlannatleerltvllepelltgdnqylcqqcnslqdakrYTELRQLPPVLHFSLLRFVYDLTtmeRKKSKQSILFPISIDMDRFLGPAE 400
                 ************************************************999******************998999*****************8887766 PP

                 TTS-TCS-B.......EEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-H CS
                 xxxxxxxxx.......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 193 kkkteekkk.......YeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevke 244
                  +k+++k++       YeL +v+ H+G s+ +GHY a + + +n++Wy+++De+v+++++
  CDO68332.1 401 VRKQHKKRSptasknlYELRGVLLHKGpSAYHGHYEAQVFDVQNQSWYQFNDEEVTKIES 460
                 6666666667777778*********************999999***************84 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   1.9   4.6e-20   1.4e-16      98     320 .]     247     455 ..     172     455 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 4.6e-20
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  98 lssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilksslerekttraw 196
                  ++  q+f + ++ +l +e+k++++  +e +s i++ ++ k++ ++ c+kC + ++r+s++l ++++      ++++ + ++  +l+  l    ++++ 
  CDO68332.1 247 EQQDAQEFSKLFMAHLDTEFKKQQD--AELQSLIANQFEGKLVYNTVCQKCLRRSERDSDFLEIEVNL----ANNATLEERLTVLLEPELLT-GDNQYL 338
                 2333478*************99876..8999*********************************9944....44566667888888888888.999*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 197 CekCkryqpteqrktvknlPpvLalnakle.ee...eelelwktknwlpleiklsldedknl.eeklkeerekakaekeikvYeLqsvvvhigdskesg 290
                 C++C++ q  ++   +++lPpvL + + ++  +    e++  k++  +p +i++    d++l  ++ +++ +k++ + + + YeL++v  h g s  +g
  CDO68332.1 339 CQQCNSLQDAKRYTELRQLPPVLHFSLLRFvYDlttMERKKSKQSILFPISIDM----DRFLgPAEVRKQHKKRSPTASKNLYELRGVLLHKGPSAYHG 433
                 ***************************998555443233344444566666666....5666657777777778899999*************8888** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 291 hLvslvkvaekelerdppesqWylFNDflV 320
                 h+ + v         d+++++Wy FND +V
  CDO68332.1 434 HYEAQVF--------DVQNQSWYQFNDEEV 455
                 ****998........67789*******766 PP

>> DUSP  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        38       2      16 ..     754     768 ..     753     824 .. 0.85
   2 !   21.5   0.0   8.9e-08   0.00027       4      88 ..     903     979 ..     901     982 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
                 -EEEEEEHHHHHHHH CS
        DUSP   2 qkyyliskkWleqwk 16 
                 ++ y+isk Wl+ w+
  CDO68332.1 754 ENGYYISKAWLKDWR 768
                 578***********8 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 8.9e-08
                 EEEEEHHHHHHHHHHHTTSTTSTTTTCGC..S--SB-CGGGB.......TTTEB-SS--B....TTTEEEEEHHHHHHHHHHC-T----EE CS
        DUSP   4 yyliskkWleqwksyvsydavteekesgs..kpgpIdnsdllkappltkengrlkpnlqe....grdyeivpeevwkfLvqwYgggpeikr 88 
                 + +i+++++++w+++v          +++  +p+++dns+++      +e+g l  + +e    ++ ++iv+ + w++L q Y +gp i++
  CDO68332.1 903 CAIIPSQFVRSWRQWV--------MRPNElaRPEAVDNSQFI------CEHGLLAFDPNEsgdmDSSMTIVKRSDWDALEQLYSAGPLIAI 979
                 679*************........77777445**********......666666666666554466699*****************98875 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   4.6e-09   1.4e-05       8      67 ..    1065    1125 ..    1060    1126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.6e-09
                  SEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEE CS
   ubiquitin    8 gkkitleveesdtveelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhl 67  
                  gk   +++ +  +v++lK  + ++ gip+ +qrL+y G++L + + t+ ++g+ +++tl l
  CDO68332.1 1065 GKRRKITITKAMSVKDLKVMLNDELGIPVISQRLFYRGQELdDSSATMISLGVLSNDTLDL 1125
                  5556678888899****************************55567999999999999865 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3         6   1.8e+04      15      21 ..     289     295 ..     288     296 .. 0.78
   2 ?    4.4   0.1     0.014        42      15      31 ..     717     734 ..     716     737 .. 0.83
   3 ?    4.3   0.1     0.015        44      14      33 ..     831     850 ..     831     853 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 6
  Auto_anti-p27  15 aetCpvC 21 
                    +++C++C
     CDO68332.1 289 NTVCQKC 295
                    6788888 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
  Auto_anti-p27  15 aetCpvCgvPLmrdr.kg 31 
                    a++Cp+C   L+r++ ++
     CDO68332.1 717 ADVCPECVERLFREKlYQ 734
                    589**********98754 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
  Auto_anti-p27  14 LaetCpvCgvPLmrdrkggk 33 
                    +ae CpvC ++L  +r++++
     CDO68332.1 831 TAEPCPVCEAVLHISREDKR 850
                    5899****999987775555 PP

>> DUF2757  Protein of unknown function (DUF2757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00011      0.34      28      72 ..     265     309 ..     248     313 .. 0.85
   2 ?   -2.6   0.3       2.3   6.9e+03       5      11 ..     337     343 ..     336     356 .. 0.64
   3 ?   -2.1   0.1       1.6   4.8e+03      54      69 ..     719     734 ..     715     737 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                 --SSSSHHHHHHTSSS-TT-S-EEEE--HHHHHHHHHTTTSS-S- CS
     DUF2757  28 gfnkLteeerqdmieyeengdikvkviCedCqealernpdyhele 72 
                  f+k ++ e q +i+ + +g++  +++C++C +  er  d+ e e
  CDO68332.1 265 EFKKQQDAELQSLIANQFEGKLVYNTVCQKCLRRSERDSDFLEIE 309
                 4999999*****************************999998876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                 EEETTT- CS
     DUF2757   5 YrCrhCg 11 
                 Y C++C+
  CDO68332.1 337 YLCQQCN 343
                 6666665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.6
                 --HHHHHHHHHTTTSS CS
     DUF2757  54 iCedCqealernpdyh 69 
                 +C +C e l r+  y+
  CDO68332.1 719 VCPECVERLFREKLYQ 734
                 8******999987664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 7214.97
//
Query:       CDO68333.1  [L=246]
Description: hypothetical protein BN946_scf184799.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1719.34
//
Query:       CDO68334.1  [L=314]
Description: hypothetical protein BN946_scf184799.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.09   13.6   0.2       0.23   12.3   0.0    1.7  2  DUF4037         Domain of unknown function (DUF4037)
       0.11   12.2   0.3       0.18   11.5   0.3    1.3  1  HBB             Helical and beta-bridge domain
       0.17   11.9   1.9          6    6.9   0.1    2.4  2  DUF1515         Protein of unknown function (DUF1515)
        3.9    8.1   9.1        6.4    7.4   3.4    2.4  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> DUF4037  Domain of unknown function (DUF4037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.2   9.7e+03      59      81 ..     189     211 ..     168     226 .. 0.56
   2 ?   12.3   0.0   5.1e-05      0.23       7      44 ..     240     277 ..     236     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
     DUF4037  59 nleralkrgdelaarlalaefvr 81 
                 + er+l+   e ++r +++ +++
  CDO68334.1 189 QHERTLRLRSEEKMRAVVEYLAE 211
                 33555554444444444444443 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.1e-05
     DUF4037   7 qkLaavtnGevfaDelgefteireklekayPedvrlkk 44 
                 ++ aa+t+Gev +De+ +++++ + ++k++P +v+ ++
  CDO68334.1 240 KATAAITHGEVVEDENLRVKALLQMFAKHMPSNVQHQM 277
                 567889****************************8764 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3     4e-05      0.18       8      85 ..     148     225 ..     142     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
                 CCHHCCCCCCCHHHHHHHHHCCCCHHHHSTTTECCHCHHHHHCHCHHHCHHHHHHHHHHHHHHHHHHHCCHHCCCTCC CS
         HBB   8 tdepklqdeysrLvegLreaeeereeeyvleeepilpdeileeavpglirsaehflsllkrlveygkarreekiekse 85 
                 +d+  l+ e+  L ++L+  ++er +e+ ++++  + +  l++  +   rs+e++++++++l e + ++ e  ++ ++
  CDO68334.1 148 EDNASLRGEVAFLTNALQLSSAERIDESGVDSNKTQLAHALQHERTLRLRSEEKMRAVVEYLAEQITSVSERCHAAEK 225
                 58899********************9999999999999999***************************9998887765 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0086        39      15      64 ..     186     235 ..     144     251 .. 0.81
   2 ?    6.9   0.1    0.0013         6       4      28 ..     271     295 ..     268     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0086
     DUF1515  15 aevkelredlk.rsedrsdasrakmyrkmdelvervtalegsvvklkadit 64 
                   +++ r  l+ rse++  a    + +++  + er +a e ++ + + d  
  CDO68334.1 186 HALQHER-TLRlRSEEKMRAVVEYLAEQITSVSERCHAAEKALKTSQHDCV 235
                 3333333.34469*******9999*****************9999888865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
     DUF1515   4 agvlqqlgtllaevkelredlkrse 28 
                 + v+ q+ tll+++ + r dl+r e
  CDO68334.1 271 SNVQHQMHTLLRDIANERADLRRLE 295
                 678999****************977 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.4    0.0014       6.4      13      80 ..     165     232 ..     160     246 .. 0.90
   2 ?    3.8   0.2      0.02        88      45      80 ..     268     303 ..     247     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
  HIP1_clath_bdg  13 kqlsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseq 80 
                     ++ s+ r   + v+ +k +l++ l++ +  + r +e+ +  +e L +++++ +++ + ++++L++s++
      CDO68334.1 165 QLSSAERIDESGVDSNKTQLAHALQHERTLRLRSEEKMRAVVEYLAEQITSVSERCHAAEKALKTSQH 232
                     556777888999****************99999999****************************9986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
  HIP1_clath_bdg  45 rkleeqkeelekLkreleakraelarlkssLesseq 80 
                     ++ ++ + ++ +L r+++++ra+l rl++  +s e+
      CDO68334.1 268 HMPSNVQHQMHTLLRDIANERADLRRLEAIERSLEK 303
                     45557788999*************999876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2213.87
//
Query:       CDO68335.1  [L=1092]
Description: hypothetical protein BN946_scf184799.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-70  235.6   0.0    1.2e-69  235.0   0.0    1.3  1  RAI16-like  Retinoic acid induced 16-like protein


Domain annotation for each model (and alignments):
>> RAI16-like  Retinoic acid induced 16-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   6.5e-74   1.2e-69       1     360 []      80     593 ..      80     593 .. 0.87

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 6.5e-74
  RAI16-like   1 cleyllknkiletLctlgeadkpegvkkevlkfytkLlsklseplLphesvhrpllkL...................llsssgsst.sssdvekelvsL 79 
                 cleyllkn++l tL++l+ead+p g+++evl+  ++++  l e++L+h +vh+++l+L                   + ++++ s+ + s+ e++lv+L
  CDO68335.1  80 CLEYLLKNDVLGTLVKLSEADRPFGIQAEVLRAVQNMVVLLDEQFLVHSAVHKAVLRLlrncvgddlqeqldgrnkpMGAAGNASRtQPSEYEEDLVNL 178
                 **********************************************************8888888888888888888555555544568888******* PP

  RAI16-like  80 LetlcaklrkdpnLlefflenkskqqs..............................................eesesatkesaaatekenfilfslLl 132
                 L++lc+ +r + +Ll +f+++k++ +                                               ++ +   + +++++ + +f+lf++Ll
  CDO68335.1 179 LCILCSRIRTYRELLMIFFHDKQWYRPeplfaveeeseededeegddsksdkteaapdsnapqrakspapsqqTDGSGLGSSTTTKKPEYEFLLFNYLL 277
                 *************************669*****************************************987655555667778888899********* PP

  RAI16-like 133 gyvhseGrigerAreaLllllelaseeetae.........................kpliestdlcpvlateLgalYslLpkkldpl...........e 195
                 ++vh+eG+ig++Ar++Ll+l+++a +  +++                          + i ++d+++vla++L a+YslLp+kl+             +
  CDO68335.1 278 RFVHREGQIGDFARAGLLFLMDVAMSPVDGSykegdlhtsssapennpstdaalalAEYILDGDFSDVLAAGLAAVYSLLPTKLEIKppvpadaapgaA 376
                 ************************444444489999********************666666**********************755334555556655 PP

  RAI16-like 196 tiqssdwsidekiste..............dlatfpg.keaLesFlslleFcqslikeahs.............eiaeallklieesFLadvLePsLle 266
                 +i +s++   ++  +e              + ++ p+ k+ L++Fl+lleF+q++ ++                +i + +l++++  FL+++L+Ps+le
  CDO68335.1 377 MILGSSVTDIPQDDQEklqeerersramgvEESSSPDfKARLDHFLKLLEFLQDIFRRNVPredsfdpsslvgsAIVQSILDAVRRVFLENILYPSILE 475
                 555555543333333389999*********77778999*******************999899************************************ PP

  RAI16-like 267 tse..gssltvlayLkrilrslespalleqvlsFLLg....................tetetetsrddedlplkttlierissksfelsistl..rlfe 341
                 +s+  gs ++v+ y++ ++r l++ +l + ++ FL+                     + + +  s    dl  k++++ r s+  + l ++++  r  +
  CDO68335.1 476 CSDadGSAVAVMSYIEIMIRTLDGGQLADLLIDFLMSedsteelgrsrarphsmltlDGKLPPSSMSQADLSRKSKQRRRKSTAMTLLEMEAPeaRRKS 574
                 ***99*************************************************999555555555556666666666666666555555555226788 PP

  RAI16-like 342 tllqlpdeniLynLvLrnL 360
                  ++ +  +++L++L+L nL
  CDO68335.1 575 SYFTSMGRFTLKDLILTNL 593
                 9***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 6451.26
//
Query:       CDO68336.1  [L=492]
Description: hypothetical protein BN946_scf184799.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0005   19.9   0.1     0.0019   18.1   0.1    2.0  1  F-box     F-box domain
  ------ inclusion threshold ------
       0.11   11.5   0.0       0.22   10.6   0.0    1.5  1  LisH_2    LisH


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.1e-07    0.0019       2      38 ..      13      49 ..      12      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.1e-07
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilid 38
                +++++P++v+  I+e+L+ +dll l+r+ +++r ++ 
  CDO68336.1 13 KFLEMPLDVIYMIMESLEARDLLILARTDRKFRTILM 49
                799************************9777777765 PP

>> LisH_2  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.5e-05      0.22       1      13 [.     378     390 ..     378     390 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.5e-05
      LisH_2   1 lnsLvaeYLqsqg 13 
                 ++s+v+eYLq++g
  CDO68336.1 378 YHSIVVEYLQKHG 390
                 59*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3436.76
//
Query:       CDO68337.1  [L=361]
Description: hypothetical protein BN946_scf184799.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-22   79.0   1.8    2.1e-22   79.0   1.8    2.4  2  DnaJ          DnaJ domain
  ------ inclusion threshold ------
       0.14   11.1   0.6        0.2   10.6   0.6    1.2  1  DUF2362       Uncharacterized conserved protein (DUF2362)
       0.23   11.7   0.1       0.23   11.7   0.1    3.3  4  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   1.8   3.5e-26   2.1e-22       1      63 []      19      86 ..      19      86 .. 0.89
   2 ?   -1.2   0.1      0.39   2.3e+03      25      25 ..     131     131 ..     116     144 .. 0.53

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 3.5e-26
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS....CCHH...HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn....pkdp...eaeekFkeineAyevLsdpekRkqYD 63
                d+Ye+L +++das d+IkkaYrklalkyHPDk+    +  +   ea+ +F+++  Ay vLsd+ +Rk+YD
  CDO68337.1 19 DLYEVLSLKSDASPDDIKKAYRKLALKYHPDKHagasD--EakaEASVRFQQLGFAYAVLSDDARRKRYD 86
                79*******************************66532..13357777*********************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.39
                 H CS
        DnaJ  25 a 25 
                 a
  CDO68337.1 131 A 131
                 3 PP

>> DUF2362  Uncharacterized conserved protein (DUF2362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   3.3e-05       0.2      39     229 ..     114     308 ..     105     324 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.3e-05
     DUF2362  39 ekaesllkklkksel.......dvdsiakelekavkeelleyaekeeptdeeifaqvyhklvhspaletllqlehtyakavedlveernkelekleekq 130
                 + + ++l++lkk+         d+++  +e+e ++++ ++ +  +++ +de  f    ++l+++ +l  l + e + +++ ++lv++++ + e    k+
  CDO68337.1 114 RVTRDKLDELKKEYQgsaeeveDLKKAYTETEGSLED-MMLHIPHSTYEDEARFIVIITDLIKKGELPLLPRWESSTKDEKAKLVRKKQAQKEA---KE 208
                 4444444444444330000000333444444444544.444455666699***********************************998877654...45 PP

     DUF2362 131 teemekaiqeldksltdedvnelaakhfeeqqllkkklnseleelketQkkeYrewvmklveelksptns.slsseikaqssslldkeeareeaipekn 228
                  e + k++   d+ + + +    ++k   +q++  ++ +s l++l  + +k+   +  +l+ ++  ++ + + +++ k+++++ +d++e++++a+p+k+
  CDO68337.1 209 AEALAKELGVWDEFYGSGKPGARKTKGKGKQSAADEEDTSALQALILKKRKNMDSFFDSLAAKYMDAEPEpKGGKKGKKRAKAAEDENEEEASASPRKR 307
                 778888888889999999999999999999999999999999999999999999999999999997777777778888888888888888888888776 PP

     DUF2362 229 s 229
                 s
  CDO68337.1 308 S 308
                 6 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.8e-05      0.23      68     105 ..     119     156 ..     110     158 .. 0.93
   2 ?   -0.2   1.2      0.19   1.1e+03      56      73 ..     194     213 ..     186     219 .. 0.46
   3 ?   -2.0   1.4      0.72   4.3e+03      68      70 ..     274     276 ..     236     312 .. 0.54
   4 ?   -4.0   0.0       2.9   1.7e+04      38      50 ..     323     335 ..     316     338 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
                   -TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS- CS
  Seryl_tRNA_N  68 daeeliaevkelkeelkaleaelkeleaeleklllaiP 105
                   + +el++e +   ee+++l+++ +e e  le+++l iP
    CDO68337.1 119 KLDELKKEYQGSAEEVEDLKKAYTETEGSLEDMMLHIP 156
                   5799*********************************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.19
                   HHHCCCCCCTT..S-TCCCC CS
  Seryl_tRNA_N  56 skeIgkakkkk..edaeeli 73 
                   +k + k+ ++k  ++ae+l 
    CDO68337.1 194 AKLVRKKQAQKeaKEAEALA 213
                   34444444444333333333 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.72
                   -TC CS
  Seryl_tRNA_N  68 dae 70 
                   dae
    CDO68337.1 274 DAE 276
                   333 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 2.9
                   HHHHHHHHHHHHH CS
  Seryl_tRNA_N  38 rrelqveleelqa 50 
                    +++q++le+ +a
    CDO68337.1 323 FERIQQRLEAGKA 335
                   3344445544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1302  (0.0726198); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2198.85
//
Query:       CDO68338.1  [L=225]
Description: hypothetical protein BN946_scf184799.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.4   0.1       0.38   11.0   0.0    1.7  2  TonB_2    TonB C terminal


Domain annotation for each model (and alignments):
>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.1e-05      0.38      21      56 ..      45      81 ..      34      93 .. 0.85
   2 ?   -3.0   0.0      0.51   9.2e+03      63      76 ..     174     188 ..     169     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.1e-05
      TonB_2 21 qisgnleavveitidpdGei.vsvrlvksSgneafDk 56
                + + + +++v i i++dG++ +s ++  sS+ + fD+
  CDO68338.1 45 PLHAGSVTQVAIDISGDGKLdQSASIPGSSNPTRFDS 81
                3678899*************55*************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.51
      TonB_2  63 ekasplPppp.ekgg 76 
                 +++sp P+ p  +g 
  CDO68338.1 174 QQSSPYPQSPwLNGS 188
                 478888888865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1582.05
//
Query:       CDO68339.1  [L=345]
Description: hypothetical protein BN946_scf184799.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   13.0   2.0         15    5.9   0.4    2.7  2  DUF575    Protein of unknown function (DUF575)


Domain annotation for each model (and alignments):
>> DUF575  Protein of unknown function (DUF575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.4   0.00086        15      25      44 ..     124     143 ..     117     161 .. 0.78
   2 ?    5.7   0.1   0.00093        17      13      45 ..     200     239 ..     192     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00086
      DUF575  25 ivGhivvGveWlvsrilert 44 
                 +v  +v+Gv+Wlv  ++ r+
  CDO68339.1 124 VVSPVVIGVSWLVMVFFVRI 143
                 7889*********9876654 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00093
      DUF575  13 tnfalGvikaiPivGhivvG........veWlvsrilertv 45 
                 ++f l  i+aiPiv  +++G        v+Wl+s +l  ++
  CDO68339.1 200 AEFGLT-IAAIPIVMVLLIGaglavqreVKWLMSICLVLML 239
                 566664.79******99999566655556788888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2361.91
//
Query:       CDO68340.1  [L=236]
Description: hypothetical protein BN946_scf184799.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1843.51
//
Query:       CDO68341.1  [L=270]
Description: hypothetical protein BN946_scf184799.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-54  183.7   0.8    3.3e-54  183.3   0.8    1.1  1  adh_short        short chain dehydrogenase
    1.9e-35  122.5   0.6    2.6e-35  122.1   0.6    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.9e-12   46.1   0.4    6.1e-12   45.8   0.4    1.1  1  KR               KR domain
     0.0025   17.7   0.1     0.0041   17.0   0.1    1.3  1  Helicase_RecD    Helicase
  ------ inclusion threshold ------
      0.021   14.1   0.1       0.06   12.7   0.0    1.7  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
      0.025   14.7   1.3      0.094   12.8   0.4    2.0  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.035   13.8   0.9      0.078   12.8   0.9    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
      0.047   13.1   0.1      0.074   12.5   0.1    1.2  1  DUF4392          Domain of unknown function (DUF4392)
      0.061   12.8   0.3       0.12   11.8   0.3    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
       0.12   12.2   0.2       0.22   11.4   0.2    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.18   11.2   0.0       0.24   10.7   0.0    1.1  1  DUF1776          Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.8     2e-57   3.3e-54       1     187 [.      12     207 ..      12     214 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 2e-57
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT........TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S-- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee........gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgs 90 
                 k+vl+tGas+GIG a+a  +ak+G +v++++r+ e+l++va+e++++        g k+ a+++Dv d++++  +++++ ++l+k+d+LvnNAG   g+
  CDO68341.1  12 KTVLITGASAGIGAATAILFAKAGSNVILAARRLEALKQVAEECGKAhkasglqqGGKFAAVKLDVGDKKQIASFLDQVPEELKKIDILVNNAGFvLGM 110
                 79******************************************98776666666778************************************9999* PP

                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  91 gpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 + + ++s++++e++++vN+ g++ +t+++++ +++++ G+I+n++S+ag++p+ag++ Y+A+K+av+++t +l +e+ +t irv+ ++PG+v+T++ 
  CDO68341.1 111 ERVGDISDADYEAMFNVNVLGLIAITQLFIKDFKARKTGHIINIGSIAGREPYAGGSIYCATKHAVRAFTGALLREVVDTPIRVTEIQPGMVETEFS 207
                 **********************************************************************************************975 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.6   1.6e-38   2.6e-35       1     215 [.      18     241 ..      18     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 1.6e-38
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E........EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-G CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v........lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpf 87 
                   Ga  gIG+a+A ++a++G +v+l+ ++ ea k+ +ee  ++++a+ +        +++DV d++q++++ ++v e+++k+Dilvnnag++    +++
    CDO68341.1  18 GASAGIGAATAILFAKAGSNVILAARRLEAlKQVAEECGKAHKASgLqqggkfaaVKLDVGDKKQIASFLDQVPEELKKIDILVNNAGFVLG-MERV 113
                   899***********************99997777777766655333123334468************************************9.**** PP

                   GGH-HHHHHHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGG CS
  adh_short_C2  88 letsreefdraldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asg 181
                    ++s+++++ +++vn+ +l+++++ +++   ++++g i+n+ s++++   ++ ++y+a+K+a+ a+t +l +e+ +  iRv  + pg+++T+  + +
    CDO68341.1 114 GDISDADYEAMFNVNVLGLIAITQLFIKdfKARKTGHIINIGSIAGREPYAGGSIYCATKHAVRAFTGALLREVVDTPIRVTEIQPGMVETEFsVVR 210
                   ****************************7555555********************************************************986444 PP

                   STT.HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHC CS
  adh_short_C2 182 ikg.fdelleelearaplgrlgtpeevaeaalfLa 215
                   ++g +++  +  e  +pl      e++ae +++ a
    CDO68341.1 211 FRGdKSAADKVYEGLHPLVA----EDIAEEIVWAA 241
                   44414455555666677655....56665555555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.4   3.7e-15   6.1e-12       2     160 ..      13     180 ..      12     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 3.7e-15
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHH......HHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---.--- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedska......liaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAg.vlr 93 
                 t+litG+  g+G ++a   a+ g ++++l +R+ +a ++ ++      + + l ++g +  +v++Dv dk+++++ l+++ +e ++i   ++ Ag vl 
  CDO68341.1  13 TVLITGASAGIGAATAILFAKAG-SNVILAARRLEALKQVAEecgkahKASGL-QQGGKFAAVKLDVGDKKQIASFLDQVPEELKKIDILVNNAGfVLG 109
                 78***********9998777666.56777777764444444322222133333.34669********************************99984688 PP

                 ---TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHH CS
          KR  94 dklleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDala 160
                  + + + +++d+e++++  v G+  + +l+ +    ++  +++ + Siag    ag + Y a+ + + a+ 
  CDO68341.1 110 MERVGDISDADYEAMFNVNVLGLIAITQLFIKdfkaRKTGHIINIGSIAGREPYAGGSIYCATKHAVRAFT 180
                 *****************************988888899************999999999999988777775 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.5e-06    0.0041       9      80 ..      18      88 ..      17     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
  Helicase_RecD  9 GKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyia 80
                   G Sa +G a+a l a++ sn++++a + e++k++ e + k+ +a gl++  k++  +   +  +kq   ++ 
     CDO68341.1 18 GASAGIGAATAILFAKAGSNVILAARRLEALKQVAEECGKAHKASGLQQGGKFAAVK-LDVGDKKQIASFLD 88
                   889********************************************9966666555.55555566666654 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.7e-05      0.06      33      79 ..       8      54 ..       3      65 .. 0.90
   2 ?   -2.6   0.0       1.8     3e+03      71      88 ..      88     105 ..      82     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.7e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCC CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitre 79
                    l gk+v++ G+s  +g + a+l++++++ V ++ ++ + l+++ +e
     CDO68341.1  8 RLVGKTVLITGASAGIGAATAILFAKAGSNVILAARRLEALKQVAEE 54
                   578********************************999888887665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                    CCHHHHHCCSSEEEE-SS CS
  THF_DHG_CYH_C  71 kdlaeitreadivvvavG 88 
                    ++++e +++ di+v  +G
     CDO68341.1  88 DQVPEELKKIDILVNNAG 105
                    577889999999998877 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   5.8e-05     0.094       9      61 ..       8      59 ..       2      70 .. 0.87
   2 ?    0.3   0.0      0.42   6.8e+02      55      81 ..      76     102 ..      68     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.8e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET- CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeei 61
                  +l +k+vl+ Ga   +  ++  L ak   +v+ a R le  k++aee++++  
    CDO68341.1  8 RLVGKTVLITGASAGIGAATAILFAKAGSNVILAARRLEALKQVAEECGKA-H 59
                  67899*******************************************655.3 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.42
                   HHT.ET-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH  55 elkgeeiealkleelkellaeadvvis 81 
                   ++++++  a  l+++ e l+++d+++ 
    CDO68341.1  76 DVGDKKQIASFLDQVPEELKKIDILVN 102
                   566777788899999********9985 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   4.8e-05     0.078      40      63 ..      11      34 ..       3      40 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-05
                     -SEEEEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafg 63
                      k+vL+ GaS+G G A+ i  a +
       CDO68341.1 11 GKTVLITGASAGIGAATAILFAKA 34
                     599****************87654 PP

>> DUF4392  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.5e-05     0.074      65     185 ..      28     155 ..      21     159 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
     DUF4392  65 araLqalgkkvvivtd..elnekiveaaveqgvlktevpllelqdrsaeaaivfltkdgdkkeaeaeelleklkp........dhliaiErpGraadGn 153
                 a  + + g +v++ +   e  +++ e++ ++  +k +     lq+  + aa++    d+++  ++ +++ e+lk+         +++ +Er+G  +d +
  CDO68341.1  28 AILFAKAGSNVILAARrlEALKQVAEECGKA--HKAS----GLQQGGKFAAVKLDVGDKKQIASFLDQVPEELKKidilvnnaGFVLGMERVGDISDAD 120
                 5555888999988888877777777777777..3333....33444444444444444444444444444444333223333389999*********** PP

     DUF4392 154 yynmrgeniselvaplddlfeaakeig...iptig 185
                 y  m  +n+  l+a +  +++ +k+++   i +ig
  CDO68341.1 121 YEAMFNVNVLGLIAITQLFIKDFKARKtghIINIG 155
                 ********************999887764555554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   7.5e-05      0.12       1      73 [.      14     105 ..      14     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.5e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC................EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl................elveldltdrsalerlfke....e.qpdavihlAa 73 
                 +l+tGa+  iG+a++  ++++g +vi  +r+ +a ++ ++                     v+ld+ d+++++ ++++      ++d+ ++ A+
  CDO68341.1  14 VLITGASAGIGAATAILFAKAGSNVILAARRLEALKQVAE--EcgkahkasglqqggkfAAVKLDVGDKKQIASFLDQvpeeLkKIDILVNNAG 105
                 79**********************9999999555444333..24589999*******99999********999998862222234555555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013      0.22       9      56 ..      22      71 ..      13     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                CCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH..HHHCCTTTTSS- CS
     3HCDH_N  9 tmGagiaavfasagleVvlvdiseealekalekiek..sleklvekgklk 56
                 +Ga  a +fa+ag +V l  ++ eal++++e++ k  + + l++ gk+ 
  CDO68341.1 22 GIGAATAILFAKAGSNVILAARRLEALKQVAEECGKahKASGLQQGGKFA 71
                48*****************************9998844444455555544 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.24     101     200 ..     104     202 ..      93     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
     DUF1776 101 lsyptgp..ietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikL 197
                   +  g+  +  i+ + ++  +n ++l  i+++q +++ +++   +k+  i+   si      +  ++   +  a++a++ +L re+ +  i vt+i+ 
  CDO68341.1 104 AGFVLGMerVGDISDADYEAMFNVNVLGLIAITQLFIKDFKA---RKTGHIINIGSIAGREPYAGGSIYCATKHAVRAFTGALLREVVDTPIRVTEIQP 199
                 55555543367899999************************9...778888888999998888888999999**************************9 PP

     DUF1776 198 Gnl 200
                 G++
  CDO68341.1 200 GMV 202
                 976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1982.61
//
Query:       CDO68342.1  [L=1221]
Description: hypothetical protein BN946_scf184799.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 7531.07
//
Query:       CDO68343.1  [L=580]
Description: hypothetical protein BN946_scf184799.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00043   20.4   0.9    0.00043   20.4   0.9    2.8  3  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.26   4.7e+03       3       7 ..       7      11 ..       5      14 .. 0.64
   2 !   20.4   0.9   2.4e-08   0.00043       9      34 ..      28      54 ..      26      58 .. 0.91
   3 !    4.7   0.2    0.0019        33      19      37 ..      73      92 ..      65      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.26
                -HHHH CS
     Zn_clus  3 CdnCr 7 
                C  Cr
  CDO68343.1  7 CSACR 11
                66666 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.4e-08
                CT---STSSSS-HHHHHCT..HHHCCCC CS
     Zn_clus  9 kKvKCdakkPaCsnCkkln..leCtfys 34
                +KvKCd+  P+C+ C k +  ++C+ y+
  CDO68343.1 28 RKVKCDGALPVCGPCSKARrpVDCE-YT 54
                9*****************99*****.76 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0019
                S-HHHHHCT..HHHCCCCTCC CS
     Zn_clus 19 aCsnCkkln..leCtfysess 37
                aC+ C+  +  ++Ct y+e  
  CDO68343.1 73 ACAPCRVAGkeSDCT-YDENI 92
                3999*99999999**.98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4038.12
//
Query:       CDO68344.1  [L=305]
Description: hypothetical protein BN946_scf184799.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-43  147.4  19.6    6.3e-43  146.9  19.6    1.0  1  Bac_rhodopsin  Bacteriorhodopsin-like protein


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9  19.6   3.5e-47   6.3e-43       3     218 ..      23     242 ..      22     245 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 3.5e-47
                    HHHHHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE.....EEEETHHHHHHHHHHHHHHHHHHHHTT CS
  Bac_rhodopsin   3 vfsvfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh.....rqvfyarYidWllttPllvlvlaelag 93 
                    +++   ++++++ ll ++++ + +++ +r +  i++ +   a +aY++ma+ lG t v+aef       rq+ y+rYi+W++t Pll+l l + +g
     CDO68344.1  23 WLWAVFAVMAISDLLMIFWTFT-RPRGSRLFHQIAIIVLTTATIAYFSMASDLGATPVRAEFGRgntinRQIWYVRYIQWFITLPLLLLELLLATG 117
                    7787888888899999999999.56667******************************************************************** PP

                    SSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSC CS
  Bac_rhodopsin  94 adrrtllvlvladvvmivgglvgaliestyrwvyftisvaallvvlylllgelaraakslsserrslfntLrnlvvvlwilYpvawllgeeGngiq 189
                     + +++++ +++ +v +v glvgal++sty+w+yft ++ all++ y+llg   r++ +++  +rs +    +   + ++lYp+ w+++e+Gn+i 
     CDO68344.1 118 LSLSDIFTTMFMGWVLVVCGLVGALVPSTYKWGYFTLGCCALLYIWYVLLGHGPRSTFAAGGVVRSGYIRSAAYLSFFLLLYPIGWGVSEGGNVIS 213
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHHHHHHHHHHCCHTT CS
  Bac_rhodopsin 190 pdveavvygilDlvtkvgfglillaaats 218
                    p+ e + ygilD++   +f +i l+ + s
     CDO68344.1 214 PTGEMIWYGILDIFLGPIFLFIFLWGLRS 242
                    ************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2066.95
//
Query:       CDO68345.1  [L=322]
Description: hypothetical protein BN946_scf184799.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-48  162.9   0.0    1.1e-47  162.7   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.0   6.1e-52   1.1e-47       1     292 [.       7     309 ..       7     311 .. 0.92

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 6.1e-52
                   .EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskenireslee 92 
                   +l +Gt+++g       ++ +++e +e+l++++++G n +DtA++Y +g+ e ll++       + +   i tKv     +++ ++ ++ +r+ +e+
    CDO68345.1   7 PLLFGTMTMGEAgkngvRTSDPKECQEILDTFFKHGHNELDTARLYAEGTTEPLLAKL------DLKGATIDTKV---YPTNPGDHAPAKLRATFET 94 
                   689*******9999999999*********************************99443......4568*******...667788999********** PP

                   HHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-E CS
  Aldo_ket_red  93 slkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkkgvp 185
                   slk L   +v +++lH pd+++p  e++++ ++e++keG+   +G+Sn++++ + ++    k+ + v++ ++q+ yn ++++ e++l++ c+k g++
    CDO68345.1  95 SLKMLAPHKVRVFYLHAPDRTVP-FEDTVREVNEMYKEGLFEIFGLSNYAAWEVAEIvgicKANGWVQPKIYQAMYNAVTREIESELVPCCRKFGLR 190
                   ***********************.**************************55555555*************************************** PP

                   EEEBSTTGGGTTGTTTSS---SSSCCC-------........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS...TT-SEEEE--SSHHHHH CS
  Aldo_ket_red 186 liaysplggGlltgkyqseedkedkeprkdlkrd........ertsknldaaeelselakehgvslaqlalryalsq...pavgivipgasnieqle 271
                   ++ y pl+gG++ gk++ ++   + + r d +++           ++++da++ l+ +a++h   l+++alr++ ++    +   +i+gas+++qle
    CDO68345.1 191 IVIYNPLAGGFFAGKVTAPDAEAPSGGRFDPNSKmgqmyrarYFKRGFFDALNFLKPIAEKHQLRLTEIALRWCQHHsvlTPADGIILGASSAAQLE 287
                   ****************98877666555555444466669998778899***************************9988889999************ PP

                   HHHGGGG-.---HHHHHHHHHH CS
  Aldo_ket_red 272 dnldalel.klseeevaeldel 292
                   +nl+ +e  +l+ee +++lde+
    CDO68345.1 288 QNLQDCEKgPLPEEILKALDEA 309
                   ******999**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2088.88
//
Query:       CDO68346.1  [L=296]
Description: hypothetical protein BN946_scf184799.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-24   84.9   0.0    1.2e-23   84.0   0.0    1.5  1  OTU            OTU-like cysteine protease
  ------ inclusion threshold ------
      0.033   13.6   0.0        1.8    7.9   0.0    2.5  3  Peptidase_C65  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   1.4e-27   1.2e-23       1     127 []     135     279 ..     135     279 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 1.4e-27
                 --SS-HHHHHHHHCCCSS.S.HCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH..................HHHHTTSTTHHHHHHHHHHHHHHCT CS
         OTU   1 rgDGnCLlravsqqlwgvsd.elrkakvseLreklaeylrehseelelfleeeeeg..................ylkeiektaawggeleifalahiLr 80 
                 ++DG+CL+ av++ql +      ++a++ + r++ a+y+++h +++ +fl +++ +                  y+  +++ta+wgge+e+ al+  ++
  CDO68346.1 135 TPDGHCLFSAVADQLSLLGIlPSSEATYATCRKAAADYIHSHPDDFLPFLPSDVGEdsagatepglmnreqfdrYCTTMRDTAVWGGEPEVVALSRAFN 233
                 59*************86665889999***************************9889****************************************** PP

                 S-EEEETTSSSSEEEE-TT-EEE--TTS-GGGS-SS-EEEEEETTEE CS
         OTU  81 rpIiVlksesgeelvglkfegvylplekdkslclkypihlyylgeHy 127
                 +pI+V++  ++   v+   +g     ++++++ ++y++ ly+lgeHy
  CDO68346.1 234 VPIHVVQGGKPPVVVH-DPAGQSGTGGDRRPVYISYHRRLYGLGEHY 279
                 ************9999.55565888999******************9 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.43   3.9e+03     111     130 ..      36      55 ..      24      85 .. 0.50
   2 ?    2.8   0.0    0.0077        69      44      57 ..     133     146 ..      94     155 .. 0.79
   3 ?    7.9   0.0   0.00021       1.8     139     201 ..     162     239 ..     148     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.43
                    HHTTSS-HH....HHHHHHT CS
  Peptidase_C65 111 iekkteeseekaeellkafn 130
                    +e+ +e+ +++   +l+ ++
     CDO68346.1  36 LESRDESVKQESATVLNDMQ 55 
                    33332222222233333333 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0077
                    -B--SSTHHHHHHH CS
  Peptidase_C65  44 rvrgDGnCfyRafl 57 
                     +  DG+C+++a++
     CDO68346.1 133 HITPDGHCLFSAVA 146
                    6789*******986 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00021
                    HHHHHHHHHHHHHHTHHHHGGGS-TT................--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEE CS
  Peptidase_C65 139 vvflRlltsaelkthadeyepFldel................stveeFceqevepvnkEaDnvqitaLaealgvkvrVe 201
                     + +R  +  ++ +h d++ pFl ++                ++ + +c++  + ++    + +++aL++a++v+++V+
     CDO68346.1 162 YATCRKAAADYIHSHPDDFLPFLPSDvgedsagatepglmnrEQFDRYCTTM-RDTAVWGGEPEVVALSRAFNVPIHVV 239
                    5667889999**************9999999*******99988999999987.99999999999***********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2087.10
//
Query:       CDO68347.1  [L=702]
Description: hypothetical protein BN946_scf184799.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-114  383.6   5.9   4.1e-113  378.7   5.9    2.0  1  Adaptin_N   Adaptin N terminal region
    1.4e-43  148.7   5.3    3.3e-34  118.3   0.1    3.6  3  Cnd1        non-SMC mitotic condensation complex subunit 1
    2.6e-14   53.4  14.0    2.3e-06   27.9   2.4    5.3  5  HEAT_2      HEAT repeats
    7.2e-08   32.0  11.1      0.023   14.9   0.0    6.2  6  HEAT        HEAT repeat
    2.2e-05   24.3   6.4       0.13   12.3   0.0    5.5  5  Arm         Armadillo/beta-catenin-like repeat
    3.9e-05   23.8   3.3       0.46   10.7   0.7    3.8  3  RTP1_C1     Required for nuclear transport of RNA pol II C-te
    9.9e-05   22.8   6.0        9.1    6.9   0.0    6.1  7  HEAT_EZ     HEAT-like repeat
    0.00042   19.9   0.2     0.0083   15.7   0.0    2.8  3  CLASP_N     CLASP N terminal
  ------ inclusion threshold ------
       0.11   13.3   1.8         43    5.2   0.2    4.2  3  HEAT_PBS    PBS lyase HEAT-like repeat
       0.13   12.0   0.0        6.1    6.5   0.0    2.9  3  RIX1        rRNA processing/ribosome biogenesis
       0.16   12.3   2.0         39    4.7   0.0    3.9  4  RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N 
       0.19   12.2   0.8         28    5.2   0.1    2.8  3  Goodbye     fungal STAND N-terminal Goodbye domain


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.7   5.9  2.7e-116  4.1e-113      10     520 ..      25     517 ..      14     520 .. 0.95

  Alignments for each domain:
  == domain 1  score: 378.7 bits;  conditional E-value: 2.7e-116
                 HHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHHHCCC-- CS
   Adaptin_N  10 aeilnsnkdddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrvLssirv 108
                 +++ ++  +++ k+k  +kk+++ i+ G+d+s lf +vv ++ +  +e+K++vYl+l+ +  ++ d + Lv+ s+ +D++d+n+l+r+lA+r++s i +
  CDO68347.1  25 EAAESKD-KKYTKRKTVLKKIVANITMGNDMSPLFTDVVQCLGTPLLEIKKMVYLFLVCYGRQKADQLHLVIPSFLQDCNDRNPLVRALAIRTMSYIPT 122
                 3333333.78889999*********************************************************************************** PP

                 CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHCS-H CS
   Adaptin_N 109 pelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnllteldp 206
                 p + e+l+++++ +lkdr+pyvrk+Aa++++kly +dp   +k  +ve + +ll d++  vv++Ava+l ei   dr         + +L+        
  CDO68347.1 123 PVVIEALTEQLRHCLKDRDPYVRKTAAICVAKLYAADPRKAEKGgFVEMLRDLLLDSNATVVANAVAALSEI--GDRQ-----DGVIFKLN-------- 206
                 ************************************************************************..4444.....45677766........ PP

                 HHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.......HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N 207 wlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne.......livlavnaLvrllsskdenlryvaLrtllkivkke 298
                    ++  kllt+l r+ ++e     + e++ ++l+++n aV+l +++ + +l++  e       +++++   Lv+llss +e ++yvaLr++l i +++
  CDO68347.1 207 --LTVANKLLTALERHSDAEM----IAERVVAQLNHANSAVVLTAIKILLYLMNYMEnrrlmeyICKKMGPPLVTLLSSGPE-VQYVALRNILLIIQRR 298
                 ..3444479999999999999....********************************9**999999999999**********.**************** PP

                 XTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHH CS
   Adaptin_N 299 pkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdei 397
                  +av ++d+k+f++k++d+++++l +l+++++l+ e+N++e++ eL++y++ev d df++k+v++Igrla+k+++ a+ +++ ll+l++++ ++v++e+
  CDO68347.1 299 -PAVLKNDVKVFFCKYNDPIYVKLAKLEIMYRLAREENAREVLAELQEYASEV-DVDFVRKAVRSIGRLAIKVQPAADACIQALLDLIETKVSYVVQEA 395
                 .*************************************************999.********************************************* PP

                 HHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHH CS
   Adaptin_N 398 vevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdketqekliq 496
                 v vi+d+++++p + e ii kL+e+l+ ++++e +aa++W++G++++++ n   a +l+  l   f +e+++v+l++lta+vKl+  +p   t++ l+ 
  CDO68347.1 396 VIVIKDVFRRYPGKYEGIIPKLCEHLDLLDEPESKAAMVWIIGQFANRIDN---ADELMDDLTYTFLEEPNEVQLALLTAAVKLFIYKPHSDTTKALVH 491
                 ***************************************************...********************************************* PP

                 HHHHHHH..XXSHHHHHHHHHHHHHH CS
   Adaptin_N 497 lvlslat..ssdlevrdRaveylqll 520
                  vl+ +t   ++ ++rdR ++y+++l
  CDO68347.1 492 KVLKWTTeeVDNPDLRDRGFMYWRML 517
                 ****9999966*************98 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.1   2.2e-37   3.3e-34       1     110 [.     108     219 ..     108     222 .. 0.93
   2 !   22.7   0.2   5.6e-08   8.3e-05     131     162 .]     220     251 ..     217     251 .. 0.92
   3 !    9.5   0.1   0.00065      0.97       6     112 ..     358     466 ..     355     506 .. 0.72

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 2.2e-37
        Cnd1   1 liRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvk.ekg.flselaklleDenprVvanalaalteiseksenaiynll 97 
                 l+Ralairt+++i  p ++e+l+e+Lr++LkD+dpyVRktaai+vakL+ +d  k ekg f+++l++ll D+n++Vvana+aal+ei ++++  i++l+
  CDO68347.1 108 LVRALAIRTMSYIPTPVVIEALTEQLRHCLKDRDPYVRKTAAICVAKLYAADPRKaEKGgFVEMLRDLLLDSNATVVANAVAALSEIGDRQDGVIFKLN 206
                 79**********************************************999875523446******************************99******* PP

        Cnd1  98 pdiisklsdalne 110
                  ++++kl++al+ 
  CDO68347.1 207 LTVANKLLTALER 219
                 ********98765 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 5.6e-08
        Cnd1 131 kqeaeslveklcprlqhansavvlaaikviLs 162
                 +++ae+++e+++++l+hansavvl+aik+ L+
  CDO68347.1 220 HSDAEMIAERVVAQLNHANSAVVLTAIKILLY 251
                 678**************************996 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00065
        Cnd1   6 airtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdii 101
                 a+r++g  +i+v+   ++ ++ L   ++ + +yV + a+iv+  ++++   k +g++ +l + l   ++p+  a  + ++ + +++  +++ +l+ d+ 
  CDO68347.1 358 AVRSIGrlAIKVQPAADACIQALLDLIETKVSYVVQEAVIVIKDVFRRYPGKYEGIIPKLCEHLdLLDEPESKAAMVWIIGQFANRI-DNADELMDDLT 455
                 899999999***************************************999999999999998853334555566666666666665.45666666666 PP

        Cnd1 102 sklsdalnecs 112
                 + ++++ ne++
  CDO68347.1 456 YTFLEEPNEVQ 466
                 66665555544 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   2.4e-09   3.6e-06       2      59 ..      96     156 ..      95     165 .. 0.81
   2 !   27.9   2.4   1.5e-09   2.3e-06       4      71 ..     133     217 ..     131     235 .. 0.73
   3 ?    0.9   0.2      0.41   6.1e+02      21      55 ..     214     249 ..     206     263 .. 0.60
   4 !   11.8   0.7   0.00016      0.23      29      85 ..     336     397 ..     318     400 .. 0.74
   5 ?    3.5   0.0     0.061        92       2      58 ..     415     476 ..     414     502 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.4e-09
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp....ealpaLvellededpavRraaaeaLgaig 59 
                 + +lq   nd +p vr+ air++  i +p     + + L+ +l+d dp+vR++aa   +++ 
  CDO68347.1  96 PSFLQDC-NDRNPLVRALAIRTMSYIPTPvvieALTEQLRHCLKDRDPYVRKTAAICVAKLY 156
                 6778888.9********************5554447777777799***********999985 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.5e-09
      HEAT_2   4 LlqalendpdpevrraairaLg..rignp.ea.....lpaLvellededpavRraaaeaLgaigdpe..........alpaLkell 71 
                 L   l +d dp+vr++a+++ +    ++p +a     +++L++ll d+++ v ++a+ aL++igd +          +++ L+ +l
  CDO68347.1 133 LRHCL-KDRDPYVRKTAAICVAklYAADPrKAekggfVEMLRDLLLDSNATVVANAVAALSEIGDRQdgvifklnltVANKLLTAL 217
                 66778.9***************763344434455567***************************8664555555555444444444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.41
      HEAT_2  21 iraLgri.gnpealpaLvellededpavRraaaeaL 55 
                 + aL r  + + + + +v  l+++++av  +a++ L
  CDO68347.1 214 LTALERHsDAEMIAERVVAQLNHANSAVVLTAIKIL 249
                 444444312234455566666666666666666644 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00016
      HEAT_2  29 npealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvReaAae 85 
                  +e+l+ L e+++  d +  r a++++g+++       ++ ++aL++l  ++ ++vv+ea+ +
  CDO68347.1 336 AREVLAELQEYASEVDVDFVRKAVRSIGRLAikvqpaADACIQALLDLIETKVSYVVQEAV-I 397
                 4589999999999999999999*****9774445332455589999999888888888764.3 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.061
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgai 58 
                 ++L++ l    +pe ++a ++ +g+++n+     e+++ L+     e  +v+ a  +a++++
  CDO68347.1 415 PKLCEHLDLLDEPESKAAMVWIIGQFANRidnadELMDDLTYTFLEEPNEVQLALLTAAVKL 476
                 67888886678899**********99887766678888888855445558888888888776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00029      0.43       1      24 [.      94     117 ..      94     120 .. 0.90
   2 !   14.9   0.0   1.5e-05     0.023       4      28 ..     132     156 ..     129     158 .. 0.89
   3 !    7.4   0.1     0.004         6       2      28 ..     169     195 ..     168     197 .. 0.87
   4 ?    0.0   0.0      0.97   1.4e+03       6      24 ..     231     249 ..     227     255 .. 0.81
   5 ?   -3.0   0.0         9   1.3e+04      19      29 ..     375     385 ..     374     386 .. 0.80
   6 ?   -1.3   0.0       2.5   3.7e+03       1      28 [.     413     441 ..     413     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++P +l+ ++D +p VR+ A++++
  CDO68347.1  94 VIPSFLQDCNDRNPLVRALAIRTM 117
                 58999999************9986 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-05
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                  l ++l+D +p VR++Aa ++++l+
  CDO68347.1 132 QLRHCLKDRDPYVRKTAAICVAKLY 156
                 57899****************9885 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.004
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 + +l  ll D+++ V ++A+ aL ++ 
  CDO68347.1 169 VEMLRDLLLDSNATVVANAVAALSEIG 195
                 5678889999**************995 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.97
                 HHHHT-SSHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaL 24 
                 +  l++ ++ V  +A+k L
  CDO68347.1 231 VAQLNHANSAVVLTAIKIL 249
                 5569***********9987 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 9
                 HHHHHHHHHHH CS
        HEAT  19 aAakaLgalae 29 
                 a+++aL +l+e
  CDO68347.1 375 ACIQALLDLIE 385
                 89999998876 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHT-..SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD..pspeVReaAakaLgala 28 
                 ++P l++ l D  ++pe  +a ++ +g++a
  CDO68347.1 413 IIPKLCEHL-DllDEPESKAAMVWIIGQFA 441
                 688888887.77788888888899999887 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.032        48       7      33 ..     124     149 ..     121     152 .. 0.88
   2 !   12.3   0.0     9e-05      0.13      12      39 ..     167     194 ..     167     196 .. 0.93
   3 ?    2.1   0.0      0.15   2.2e+02      15      25 ..     271     281 ..     271     289 .. 0.78
   4 ?    3.3   0.2      0.06        89      13      33 ..     376     396 ..     369     396 .. 0.87
   5 ?   -0.1   0.0      0.73   1.1e+03      12      22 ..     412     422 ..     411     438 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.032
                 HHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   7 avieaGavppLvrLLssedeevqeeAa 33 
                 +viea   ++L ++L++ d+ v++ Aa
  CDO68347.1 124 VVIEA-LTEQLRHCLKDRDPYVRKTAA 149
                 67778.8899**************998 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9e-05
                 THHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  12 GavppLvrLLssedeevqeeAawALsNL 39 
                 G v+ L +LL + + +v+ +A++ALs +
  CDO68347.1 167 GFVEMLRDLLLDSNATVVANAVAALSEI 194
                 6799*********************987 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.15
                 HHHHHHTTTSS CS
         Arm  15 ppLvrLLssed 25 
                 ppLv+LLss+ 
  CDO68347.1 271 PPLVTLLSSGP 281
                 9*******653 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.06
                 HHHHHHHHTTTSSHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAa 33 
                 ++++L++L++++   v++eA+
  CDO68347.1 376 CIQALLDLIETKVSYVVQEAV 396
                 9*********99999999985 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.73
                 THHHHHHHHTT CS
         Arm  12 GavppLvrLLs 22 
                 G++p L++ L+
  CDO68347.1 412 GIIPKLCEHLD 422
                 9******9998 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0014       2.2       5      74 ..      99     162 ..      96     166 .. 0.86
   2 !   10.7   0.7   0.00031      0.46       8      80 ..     176     266 ..     169     279 .. 0.80
   3 ?    2.1   0.0      0.14   2.1e+02      36      83 ..     371     421 ..     326     446 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee 74 
                 l+d++d  + vra ++++++ + +       + ie++++ l ++Lkd d+Yv   a  ++++L  ++p++
  CDO68347.1  99 LQDCNDRNPLVRALAIRTMSYIPT------PVVIEALTEQLRHCLKDRDPYVRKTAAICVAKLYAADPRK 162
                 789999999999999999987754......45799*****************999999999999888876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkske.................avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee.vlklLl 80 
                 l d+ + v a+++  L+++  +++                    ++d+e i++ ++ +L++ +s v L aik+L  L+++++++  ++ ++
  CDO68347.1 176 LLDSNATVVANAVAALSEIGDRQDGVifklnltvanklltaleRHSDAEMIAERVVAQLNHANSAVVLTAIKILLYLMNYMENRrLMEYIC 266
                 56777777777888888877777766888888888888888889999*******************************9986541445555 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
     RTP1_C1  36 ldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee...vlklLleey 83 
                   +++ ++ ll+ ++ + sYv  +a+ ++  +  ++p +   ++++L+e+ 
  CDO68347.1 371 PAADACIQALLDLIETKVSYVVQEAVIVIKDVFRRYPGKyegIIPKLCEHL 421
                 456788999999999999****99999999999999854333788888876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.7   5.5e+03      20      36 ..      52      69 ..      51      76 .. 0.82
   2 ?    5.9   0.1     0.013        19      16      53 ..      81     118 ..      61     120 .. 0.82
   3 !    6.9   0.0    0.0061       9.1      26      54 ..     126     154 ..     121     155 .. 0.83
   4 ?    5.8   0.1     0.013        20      33      55 .]     172     194 ..     167     194 .. 0.87
   5 ?   -0.7   0.0       1.5   2.3e+03      18      45 ..     258     284 ..     252     289 .. 0.76
   6 ?   -0.7   0.1       1.5   2.2e+03       6      40 ..     357     387 ..     354     397 .. 0.71
   7 ?   -0.7   0.0       1.4   2.1e+03      29      54 ..     413     439 ..     411     440 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.7
     HEAT_EZ 20 ellqplvpeilpaLl.al 36
                ++++pl ++++ +L+ +l
  CDO68347.1 52 NDMSPLFTDVVQCLGtPL 69
                6899999******99555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.013
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 ++ +++ ++++  ++p +l+  nd +++VRa A+++ +
  CDO68347.1  81 VCYGRQKADQLHLVIPSFLQDCNDRNPLVRALAIRTMS 118
                 556677777888899999999999999*******9976 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0061
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 ++++  +L  +L+d ++ VR++Aa++ ++
  CDO68347.1 126 IEALTEQLRHCLKDRDPYVRKTAAICVAK 154
                 56677788889999999*******99776 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.013
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgnl 55 
                 L  lL d++++V a+A+ aL+ +
  CDO68347.1 172 LRDLLLDSNATVVANAVAALSEI 194
                 778999**************986 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.5
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsdeVR 45 
                 +++l++   +++ p+L+ lL++  +eV+
  CDO68347.1 258 NRRLMEYICKKMGPPLVTLLSS-GPEVQ 284
                 7788888889999999977764.66665 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1.5
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLndd 40 
                  A++ +Grla      +qp+ ++ + aLl l +++
  CDO68347.1 357 KAVRSIGRLA----IKVQPAADACIQALLDLIETK 387
                 6888999977....567888888888888666655 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 1.4
     HEAT_EZ  29 ilpaLl...alLnddsdeVRaaAagaLgn 54 
                 i+p L+    lL  d++e +aa ++ +g+
  CDO68347.1 413 IIPKLCehlDLL--DEPESKAAMVWIIGQ 439
                 666666555667..99999**99999998 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.6e-06    0.0083     167     213 ..     119     165 ..      84     184 .. 0.88
   2 ?   -2.4   0.1       1.9   2.9e+03      55     104 ..     227     278 ..     210     280 .. 0.67
   3 ?    0.6   0.0      0.24   3.5e+02      87     125 ..     368     406 ..     353     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.6e-06
     CLASP_N 167 kleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAks 213
                 ++    +++++ ++l+ +l+D +p VR+ta  ++ +++   P +A++
  CDO68347.1 119 YIPTPVVIEALTEQLRHCLKDRDPYVRKTAAICVAKLYAADPRKAEK 165
                 55555678999*********************************996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
     CLASP_N  55 leailkalssLrttlsstgchllkelaiqlkeq.ldpm.veillptLlkllg 104
                 +e ++ +l++  ++++ t++++l  l+   +++ l ++ ++++ p L++ll+
  CDO68347.1 227 AERVVAQLNHANSAVVLTAIKILLYLMNYMENRrLMEYiCKKMGPPLVTLLS 278
                 4566777777777877777777766666555544444437777777777766 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.24
     CLASP_N  87 qldpmveillptLlkllgdtKkiisqnanqalaallsna 125
                 +++p +++ ++ Ll+l+  +   + q+a ++++++++  
  CDO68347.1 368 KVQPAADACIQALLDLIETKVSYVVQEAVIVIKDVFRRY 406
                 578899999999999999999999999999999998765 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.42   6.3e+02       1      25 [.     109     133 ..     109     138 .. 0.89
   2 ?    2.5   0.0      0.22   3.3e+02       3      15 ..     185     198 ..     183     235 .. 0.79
   3 ?    5.2   0.2     0.029        43       3      26 ..     356     385 ..     355     386 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHCTSGGGHHHHHHHC CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaipaLleaL 25 
                 vR+ A++ +  + ++ +i+aL e L
  CDO68347.1 109 VRALAIRTMSYIPTPVVIEALTEQL 133
                 899999999************9865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.22
                 HHHHHHHHHCTS.G CS
    HEAT_PBS   3 raAakaLgqlgd.e 15 
                 ++A+ aL ++gd +
  CDO68347.1 185 ANAVAALSEIGDrQ 198
                 68*********951 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.029
                 HHHHHHHHHCTS......GGGHHHHHHHCT CS
    HEAT_PBS   3 raAakaLgqlgd......eeaipaLleaLq 26 
                 r A++++g+l        +++i+aLl + +
  CDO68347.1 356 RKAVRSIGRLAIkvqpaaDACIQALLDLIE 385
                 679**********************98865 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15   2.2e+02      41      74 ..     119     158 ..      85     201 .. 0.62
   2 ?    0.5   0.0       0.3   4.4e+02      31      98 ..     157     220 ..     127     262 .. 0.52
   3 ?    6.5   0.0    0.0041       6.1     129     164 ..     369     408 ..     368     413 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
        RIX1  41 e.....lvhklvtrilsLlqskspegrwa.GvcLakvtve 74 
                       +++ l++++   l++++p+ r + ++c+ak+ + 
  CDO68347.1 119 YiptpvVIEALTEQLRHCLKDRDPYVRKTaAICVAKLYAA 158
                 0445556778899999999999999886515566665544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.3
        RIX1  31 ceellkseleelvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekp 98 
                 + ++ k+e       +v+ +  Ll ++++  +  +v  +  + +    ++++   t +++ll  Le++
  CDO68347.1 157 AADPRKAEKGG----FVEMLRDLLLDSNATVVANAVAALSEIGDRQDGVIFKLNLTVANKLLTALERH 220
                 34444444444....55555555555555555555555555555555555555555555666666666 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0041
        RIX1 129 ltpnlpkfitallqlleee....letvlealstllplhPt 164
                 ++p + ++i+all+l+e +    +++++ +++++ +++P 
  CDO68347.1 369 VQPAADACIQALLDLIETKvsyvVQEAVIVIKDVFRRYPG 408
                 679999***********88*******************95 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.7   2.5e+03      14      44 ..     102     131 ..      94     162 .. 0.55
   2 ?    4.1   0.0      0.04        59       7      36 ..     169     198 ..     168     220 .. 0.84
   3 ?    4.7   0.0     0.026        39      10      42 ..     230     265 ..     223     292 .. 0.73
   4 ?   -2.7   0.0       5.2   7.8e+03      23      48 ..     321     346 ..     313     356 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
  RasGEF_N_2  14 LydqsrevvaaaleiLeeacddkeslevlve 44 
                 ++d ++ v+a a++ + +++ ++  +e+l+e
  CDO68347.1 102 CNDRNPLVRALAIRTM-SYIPTPVVIEALTE 131
                 5555565665555554.23344444444443 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.04
  RasGEF_N_2   7 iellvnqLydqsrevvaaaleiLeeacddk 36 
                 +e+l + L d++  vva a+ +L e+ d +
  CDO68347.1 169 VEMLRDLLLDSNATVVANAVAALSEIGDRQ 198
                 7899999*****************996655 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.026
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiLeea...cddkeslevl 42 
                  v qL+  +++vv +a++iL      +++++ +e++
  CDO68347.1 230 VVAQLNHANSAVVLTAIKILLYLmnyMENRRLMEYI 265
                 689***************984331104444445554 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.2
  RasGEF_N_2  23 aaaleiLeeacddkeslevlvelkps 48 
                  a lei+++   +++  evl+el++ 
  CDO68347.1 321 LAKLEIMYRLAREENAREVLAELQEY 346
                 56788888888888888888888764 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.019        28      18      58 ..       8      48 ..       2      57 .. 0.80
   2 ?   -2.8   0.0       5.8   8.6e+03      73      91 ..     232     250 ..     212     258 .. 0.74
   3 ?    4.3   0.0     0.034        51      69     110 ..     362     405 ..     326     407 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.019
     Goodbye 18 dealkelssvedllkqieaekdkfeefrekkeklkealkki 58
                d+++ +  +++++++++ea+++k+++ +++k  lk+++++i
  CDO68347.1  8 DAKFFQRGKIQEFRAELEAAESKDKKYTKRKTVLKKIVANI 48
                45777788999***********8888888888888887776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.8
     Goodbye  73 asmaFgPaslcfnAvsyLi 91 
                 a++  + + ++++A+ +L+
  CDO68347.1 232 AQLNHANSAVVLTAIKILL 250
                 4455677889999998887 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.034
     Goodbye  69 aaqgasmaFgPaslcfnAvsyLikaakk..vseiydaieeLfee 110
                 +   a  + ++a++c++A++ Li++  +  v+e+   i+++f++
  CDO68347.1 362 IGRLAIKVQPAADACIQALLDLIETKVSyvVQEAVIVIKDVFRR 405
                 45556667899************875542278899999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4804.11
//
Query:       CDO68348.1  [L=209]
Description: hypothetical protein BN946_scf184799.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1539.59
//
Query:       CDO68349.1  [L=448]
Description: hypothetical protein BN946_scf184799.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-14   54.0   0.0    2.8e-08   33.3   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0025   17.5   0.2        1.9    8.0   0.0    2.2  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.023   14.7   0.0        3.5    7.6   0.0    2.4  2  NAD_binding_9  FAD-NAD(P)-binding
      0.064   12.5   0.0       0.11   11.8   0.0    1.3  1  Malic_M        Malic enzyme, NAD binding domain
       0.15   11.3   0.1        1.8    7.7   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.19   10.9   0.0       0.38    9.9   0.0    1.4  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   9.5e-12   2.8e-08       1     121 [.      32     154 ..      32     189 .. 0.83
   2 !   18.7   0.0   2.8e-07   0.00083     183     290 ..     237     343 ..     226     349 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 9.5e-12
                  CSEEEE--SHHHHHHHHHHHH.........HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHHCCCCHCCTCEEEEESCEEE CS
                  xxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq.........agakvtlvelegtclnggcllskallgvaedaeias....evvkklnqgielllgeevvkidpgkkkv 85 
                  ++vvv+G+G +Gl++a ++ +         + ++++++ +  + ++ ++  + + +g +++ e+++         +  ++  + + +v +++p++  v
   CDO68349.1  32 FKVVVVGAGSGGLTVANQIYNrfksagkalNPGDIAIL-DAAEYHYYQPGWTLVGAGLKKKDETRRrldsL----IPPHLAHVPE-NVKTFEPKSSAV 123
                  58*****************9999999998889******.99999*******99888888888888865540....4445666666.899999999788 PP

                  EETEEECTCEEEEEESEEEE---EEE-BCTCTTC.T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  86 klekkkegdeekiaydklvlAtGssprdlgipGvae 121
                          +++ki+y++lv+AtG +++   ipG+++
   CDO68349.1 124 IT-----TSGRKITYESLVVATGLQTNWSAIPGLEK 154
                  77.....4678**********************933 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.8e-07
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.EEESEEEE-S-EEES-HHCSHCCT-EE.EETTEEE--TTS..BES..STTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..xxx..xxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngeklevvledgee.idadlvvvavGvrpstelleeklglel.derggivvdefl..rtn..vpgiyai 274
                  k+ s++le+ ++++Gv   ++++ + ++++ +k++ ++ dg++ +d+ l+ v+  + p + +  +  g ++ d++g++ vd+     tn   ++++a+
   CDO68349.1 237 KKYSDILEQLRKERGVGGIFQHNLVSVNPEAHKATFKTADGSVdVDYTLLHVSPPMGPLDFI--K--GSPIaDQAGWVSVDQATlrHTNpeYENVWAL 330
                  678999*************************9888999999976666666666666666655..3..4444489*******9988767556******* PP

                  GGGCTECCSS--HHHH CS
                  xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 275 GDvaggkggpelaqaA 290
                  GD+    + p + +aA
   CDO68349.1 331 GDCS---SLPTSKTAA 343
                  ***9...555444444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.2   0.00092       2.7       1      29 [.      33      72 ..      33      87 .. 0.78
   2 !    8.0   0.0   0.00063       1.9     169     267 ..     113     200 ..     106     248 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00092
                EEEEECTSHHHHHHHHHHHHT....T.......EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarr....g.......Vtllekg 29
                +vv++G+G  Gl++A +   r    g       +++l+++
  CDO68349.1 33 KVVVVGAGSGGLTVANQIYNRfksaGkalnpgdIAILDAA 72
                59***************95444333244555799999987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00063
                 EEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEE CS
         DAO 169 vtgleeedgkvwgverttpgendaadavVnaaGawsd.ll.gll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvl 264
                 v+ +e +    + v  tt+g++ +++ +V+a+G++++  + ++l k l     p  g +  ++  ++  v++     +  +d    g  ++  + g ++
  CDO68349.1 113 VKTFEPK---SSAV-ITTSGRKITYESLVVATGLQTNwSAiPGLeKAL---ADPSSGVSSIYSYNTCDKVWR-----D--IDSLRSGKAIFTQPAGVIK 197
                 4555332...3444.355687755677**********85555554544...589999999997777754444.....3..3333333333333457666 PP

                 EEE CS
         DAO 265 vGg 267
                 + g
  CDO68349.1 198 CAG 200
                 544 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0012       3.5       1      35 [.      35      73 ..      35      81 .. 0.85
   2 ?    4.6   0.0    0.0095        28     119     154 ..     108     141 ..      95     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
  NAD_binding_9  1 aivGaGprGlavlerLlara....kkkspleitlfdpse 35
                   ++vGaG  Gl+v++++ +r     k  +p +i + d +e
     CDO68349.1 35 VVVGAGSGGLTVANQIYNRFksagKALNPGDIAILDAAE 73
                   69***************9987777777889999999865 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0095
  NAD_binding_9 119 vhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    ++ ++v   e++  + av++++g++++++++v+A+G
     CDO68349.1 108 HVPENVKTFEPK--SSAVITTSGRKITYESLVVATG 141
                    555555555555..45799****************9 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.6e-05      0.11      26      54 ..      32      60 ..      21      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.6e-05
                --EEEEC-SHHHHHHHHHHHHHHHTTTS- CS
     Malic_M 26 qkivvlGaGsagiGiaeqivealvkeGls 54
                 k+vv+GaGs+g+ +a+qi + ++++G +
  CDO68349.1 32 FKVVVVGAGSGGLTVANQIYNRFKSAGKA 60
                589******************99999865 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.074   2.2e+02       1      15 [.      35      49 ..      24      57 .. 0.75
   2 ?    7.7   0.0   0.00061       1.8     103     157 ..     112     164 ..     105     175 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.074
  Pyr_redox_3  1 iIiGaGPaGlaaaie 15
                 +++GaG  Gl++a +
   CDO68349.1 35 VVVGAGSGGLTVANQ 49
                 577777777777754 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00061
  Pyr_redox_3 103 eVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvk 157
                  +V++ ++ +++ +++ts ++++ +++++AtG   + n+  ipG ek l+  +s v+
   CDO68349.1 112 NVKTFEP-KSSAVITTSGRKITYESLVVATGL--QTNWSAIPGLEKaLADPSSGVS 164
                  4444444.45778999999************9..8999999999864555555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00013      0.38      18      38 ..      32      52 ..      20      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
                EEEEEE--SHHHHHHHHHHHH CS
        Thi4 18 sDvvivGaGssGLtaayylak 38
                  vv+vGaGs GLt a  + +
  CDO68349.1 32 FKVVVVGAGSGGLTVANQIYN 52
                569*************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3253.58
//
Query:       CDO68350.1  [L=441]
Description: hypothetical protein BN946_scf184799.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   12.0   0.2       0.47   10.5   0.2    1.8  1  Flg_bb_rod  Flagella basal body rod protein


Domain annotation for each model (and alignments):
>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   2.6e-05      0.47      18      30 ..     212     224 ..     210     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.6e-05
  Flg_bb_rod  18 ianNiANanTtGy 30 
                 +++Ni+N+n++G+
  CDO68350.1 212 LSSNISNYNGEGA 224
                 79*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2865.57
//
Query:       CDO68351.1  [L=488]
Description: hypothetical protein BN946_scf184799.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-05   24.2   0.1    5.8e-05   23.0   0.1    1.6  1  Cu_bind_like  Plastocyanin-like domain
  ------ inclusion threshold ------
      0.024   15.1   0.4      0.076   13.5   0.4    1.8  1  Copper-bind   Copper binding proteins, plastocyanin/azurin fa


Domain annotation for each model (and alignments):
>> Cu_bind_like  Plastocyanin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   6.4e-09   5.8e-05      19      84 .]     249     317 ..     243     317 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.4e-09
  Cu_bind_like  19 rvGDtLlFkydsevhsvvevskkeyekCetsk..pleeft.....tgsdkvtLtkegsnyFisgvpghCkkGq 84 
                   +vGDt++F + ++ h+v++ s+   e C++++  p ++ +     t  ++v  + +   +F +g+pghC+kG+
    CDO68351.1 249 SVGDTVMFVWGANNHTVTKSSQ--LEICNKTSeqPFASGEqnkpfTF-TQV-VNDTNPIFFYCGTPGHCQKGM 317
                   79*************9988765..56677665114333333332111.222.3344678************98 PP

>> Copper-bind  Copper binding proteins, plastocyanin/azurin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   8.5e-06     0.076       8      96 ..     235     321 ..     228     322 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.5e-06
                  TTETSEEESSEEEEETTEEEEEEEESSSSBEEEEETTSSTTTGGGTTSCTTCEEEEBSTTEEEEEEEE....SSEEEEEEET.T.TTTTTSEEEE CS
  Copper-bind   8 esgdlqFetkeitvkkgekvtfvnlavmgHNvvldkdgvpagvdkdkvkaedetkliggGekdsvtfd....eagtYkffCs.P.HaaagMkgkv 96 
                  ++g l + + +++ + g++v+fv+  +  H v  +++    ++ ++ +    e+   +g +++  tf+    +++   f+C  P H   gM g +
   CDO68351.1 235 TQGVLRYVPFAVNASVGDTVMFVW-GANNHTVTKSSQL---EICNKTS----EQPFASGEQNKPFTFTqvvnDTNPIFFYCGtPgHCQKGMFGMI 321
                  567799******************.4455554443322...2222222....2233344445567888774345559999*99********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 3126.03
//
Query:       CDO68352.1  [L=291]
Description: hypothetical protein BN946_scf184799.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-29  102.0   0.0    2.3e-20   72.7   0.0    3.1  3  Methyltransf_3   O-methyltransferase
    4.7e-12   46.9   0.0    1.1e-11   45.7   0.0    1.6  1  Methyltransf_24  Methyltransferase domain
     0.0031   16.8   0.0     0.0045   16.3   0.0    1.2  1  TylF             Macrocin-O-methyltransferase (TylF)
  ------ inclusion threshold ------
      0.043   13.5   0.0      0.071   12.7   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.1e-07    0.0032      24      59 ..      60      95 ..      45     102 .. 0.83
   2 !    8.9   0.0   0.00017      0.75      60      89 ..     120     149 ..     118     151 .. 0.93
   3 !   72.7   0.0   5.1e-24   2.3e-20      80     195 ..     162     269 ..     158     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.1e-07
                    T.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTS CS
  Methyltransf_3 24 tdlsemevsvdegqfLslLvklvnakrvleiGvftG 59
                     +l+++ v + +g++L+l+ + ++akr+le+G+  G
      CDO68352.1 60 NGLPDIAVHPGQGKLLNLIARTMGAKRILEVGTLGG 95
                    348999**************************9877 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00017
                     HHHHHHHTTS-TT-EEEEEES-HHHHHHHH CS
  Methyltransf_3  60 yslLatalalPeDGkilaididreayeial 89 
                     ys +  a a+Pe G++++++ ++++++++l
      CDO68352.1 120 YSTIWFARAVPEGGEVVTCELQEKYAQVSL 149
                     99**********************999875 PP

  == domain 3  score: 72.7 bits;  conditional E-value: 5.1e-24
                     S-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE-S-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS--SHHH CS
  Methyltransf_3  80 idreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvDaDkssyvnyyeklleLvkvGgliaiDntLWeGkvveeddeeaka 174
                       r ++++a++ ++ ag+ +ki++ +g+a ++L+ l +++k   fDf+f+DaDk s  +yy ++ ++v++Gg+i +Dn++ +G+v+++d + +  
      CDO68352.1 162 RPRSHAQVARENFEYAGISDKIKILVGPAAETLKTLPSEEK---FDFAFIDADKASNLTYYLQAKRVVRRGGVIIVDNVVRNGTVANPDIDDE-N 252
                     567889*********************************96...*******************************************976654.4 PP

                     HH.....HHHHHHHHTT-TTE CS
  Methyltransf_3 175 lreyravllelnkklaeDprv 195
                     +r +ra+l +    +++D+ v
      CDO68352.1 253 VRGVRALLEH----IKNDKEV 269
                     5556666654....4444444 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   2.4e-15   1.1e-11       9     106 .]     120     237 ..     119     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.4e-15
  Methyltransf_24   9 vstlwllralrrngagrlvavdhdpg...................aeeaaalare....aglddrvrlikadseealasla.agsiDllfiDgg 78 
                      +st+w++ra+ + g+  +v+++ +++                    + +a++are    ag++d ++++++++ e+l++l  ++++D++fiD++
       CDO68352.1 120 YSTIWFARAVPEGGE--VVTCELQEKyaqvsllppltlcfenpdrPRSHAQVAREnfeyAGISDKIKILVGPAAETLKTLPsEEKFDFAFIDAD 211
                      79************8..566666666666666666666666666655556666666666**********************9999*******87 PP

  Methyltransf_24  79 haaeavledleallprlapggvvlfdDi 106
                        +++ l ++  + +++++ggv+++d++
       CDO68352.1 212 --KASNLTYYLQAKRVVRRGGVIIVDNV 237
                      ..8999999*****************85 PP

>> TylF  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-06    0.0045     153     248 ..     170     264 ..     163     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-06
        TylF 153 vrenFrrygLlddqvrflkGwFkdtLptapi.eklallRlDgdlyestldaleaLYdkvskGGfviiDDyaaveecreavedfreakgitapleeiD 248
                  renF++ g+  d++++l G  ++tL+t+p  ek++ + +D+d  +  +  l+a    v +GG++i+D+++   ++++   d  + +g++a le+i 
  CDO68352.1 170 ARENFEYAGI-SDKIKILVGPAAETLKTLPSeEKFDFAFIDADKASNLTYYLQA-KRVVRRGGVIIVDNVVRNGTVANPDIDDENVRGVRALLEHIK 264
                 4788876665.679***************86268*********98887777776.456889********9998888887777778888888777775 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.071      74     159 ..     164     243 ..     159     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
                    HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHHTT-EEEEEEEEEEEECCSSS- CS
  Cons_hypoth95  74 keavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlelleekkllkenalvvvetekekelp 159
                    ++ +++ +en e  ++++++++l+  a+e l++l+  +e+fd+ f+D    ++ +  +++ +l++k++++++++++v++  ++  +
     CDO68352.1 164 RSHAQVARENFEYAGISDKIKILVGPAAETLKTLP-SEEKFDFAFIDA---DK-A-SNLTYYLQAKRVVRRGGVIIVDNVVRNGTV 243
                    5667899*************************996.668********4...44.3.67789999999*******999987776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2131.13
//
Query:       CDO68353.1  [L=853]
Description: hypothetical protein BN946_scf184799.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-94  315.7   0.0      6e-94  315.3   0.0    1.1  1  MSC       Man1-Src1p-C-terminal domain
    1.3e-10   40.7   0.0    2.8e-10   39.7   0.0    1.6  1  HeH       HeH/LEM domain


Domain annotation for each model (and alignments):
>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.3   0.0   6.7e-98     6e-94       3     338 .]     393     825 ..     391     825 .. 0.95

  Alignments for each domain:
  == domain 1  score: 315.3 bits;  conditional E-value: 6.7e-98
         MSC   3 lvllilfglwYreekiavGyCgtgsetnsileeeeee.....................................................eeslleslk 48 
                 l++ + f++ Y++e+ ++G+C+ g++tn++le+ + +                                                     ++++ ++l 
  CDO68353.1 393 LLTTMPFLVHYKQESSHIGFCDAGTSTNRVLEDLRVHraaiescnrenrttlwplpgpdstssvlqpvptpssadiaddlqyakqpesavDACPAPPLV 491
                 5566667888**********************998889*******************999999999999999999999999999999999777777777 PP

         MSC  49 P.....kCtpCPehAiCysnlevkCepgyvlkphpls..........................................lggllPl..ppsCvpdseke 98 
                 P     +CtpCP+hA+C+  ++v+C++g++l+phpl                                           l+ ++P+  pp+Cv+d++++
  CDO68353.1 492 PfiqpdECTPCPKHATCT-PSSVTCDNGFILRPHPLLamfpvpvtqkgslqrfehptnfatdadlphiiyagisyamdgLPYIGPVafPPRCVEDPRRK 589
                 78888*************.77**********************************************************999999999*********** PP

         MSC  99 rkvkevakkalelLreknakvecgeskddeek......akksglseeeLkeslsekksksiskeefeelwkealkeLkkeeeivvredseseseksske 191
                 r++  + k+++++L+++++++ c++      +      a+++g++ e+L+e ++ek ++s+  ++++++++ea+++L +++++++ ed ++        
  CDO68353.1 590 RHIGVLGKAIESILANERGRRLCEGVGVGLPEgdeameAQRWGIELEKLREHIKEKTAPSM-MDTLDDTFNEAVQQLLQWGGVYMGEDATG-------- 679
                 ************************99777733456789*****************776666.5789********************99998........ PP

         MSC 192 kkkllrstslaklslkcrlrrsvretlaryrllllglllllllilylrsrlrsrraekerveelvkevlerLkkqkkkhaedpstapepylslvqLRDd 290
                   k+++++++++++++c+lr++ r+ +a++r +++gl+l +l++ly+r+r ++++ e erv++lv+ +le L++q+ +h++dp+ ap+pyls+ qLRD+
  CDO68353.1 680 --KRYLAHKTPSMGWECALRVKTRDLWAEWRRSIMGLVLSVLTVLYTRQRQARKAVEDERVASLVTVALECLRNQELAHHTDPVMAPRPYLSSLQLRDL 776
                 ..9************************************************************************************************ PP

         MSC 291 vLqdehslkernrlWkkvekvveqnsnVrtslee.vhGeimrvWeWiGs 338
                 vLqd+h++++r+rlW++ve++ve+n+nVrt+lee ++G+++rvW+W+Gs
  CDO68353.1 777 VLQDVHDVSARKRLWSRVERIVEGNANVRTNLEEvEGGDEQRVWRWVGS 825
                 ***********************************************96 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   3.1e-14   2.8e-10       1      35 []      22      56 ..      22      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 3.1e-14
         HeH  1 pksLtVaqLRriLvehgveyPsnaKKadLveLfnd 35
                p++LtV+qL  i++ h++ yPs + K++Lv+Lfn+
  CDO68353.1 22 PSTLTVPQLLGIFGFHNIKYPSQYTKPKLVQLFNE 56
                8********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6029.90
//
Query:       CDO68354.1  [L=398]
Description: hypothetical protein BN946_scf184799.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-33  114.1   0.0    5.2e-33  113.5   0.0    1.3  1  UEV         UEV domain
    3.5e-18   65.3   0.4    7.7e-18   64.2   0.1    1.7  2  Vps23_core  Vps23 core domain
  ------ inclusion threshold ------
       0.16   11.0   0.1       0.21   10.6   0.1    1.1  1  TelA        Toxic anion resistance protein (TelA)


Domain annotation for each model (and alignments):
>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   8.6e-37   5.2e-33       1     121 []      25     147 ..      25     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 8.6e-37
                 HHHHHHHHHHH-TTEEEEEEEEE-TTS-EEEEEEEEEEEE-SSSTTS-EEEEEEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS--T CS
         UEV   1 vvkdvvkvlqkfknlkprtevytfedgesklllnlkGtipvkykgatyniPiliwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLeeWkr 99 
                 v+++  ++l+++++++p+t+vyt++dg+++lll+l+G +p++++ a+yniPi +wv+ +yP+++Pi yv pt++m ++++   d++G+   +yL++W+r
  CDO68354.1  25 VYAHADAALSRHPTIRPKTDVYTYDDGRTQLLLCLHGLLPISFRAASYNIPIAVWVPREYPRSPPIAYVVPTSDMLVRPGPDTDTSGRCLIEYLRNWER 123
                 5789999******************************************************************************************** PP

                 ..TT--HHHHHHHHHH-----XXX CS
         UEV 100 ..eksnlvslvqelaqafeeesPl 121
                   e ++lv l++ + +af++++P+
  CDO68354.1 124 kcEGCDLVALLDAMKEAFSRQPPV 147
                 888899*****************7 PP

>> Vps23_core  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   8.1e+03      15      28 ..     269     282 ..     264     286 .. 0.80
   2 !   64.2   0.1   1.3e-21   7.7e-18       1      46 [.     322     367 ..     322     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
  Vps23_core  15 elvaedkAieDtiy 28 
                 +l+a + Ai+D + 
  CDO68354.1 269 DLLAGEPAIRDEMA 282
                 79999999999775 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 1.3e-21
  Vps23_core   1 elvvaetplsnqllelvaedkAieDtiylLdkaldrgkidldtflK 46 
                 elv+++t+++nql++lvaed+AieDtiy+L +al++g+idl+ fl+
  CDO68354.1 322 ELVCSTTIVYNQLVNLVAEDNAIEDTIYHLHRALNAGRIDLERFLR 367
                 79*******************************************8 PP

>> TelA  Toxic anion resistance protein (TelA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   3.5e-05      0.21     103     158 ..     268     323 ..     240     351 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
        TelA 103 keLekgqdellkdnaaLdqlyeknleyfkeLekyiaaGekkleeldekllpeleak 158
                 ++L +g+  ++  +a L+  ++  +    +Le+ +aaGe++++el++k  pe+++ 
  CDO68354.1 268 TDLLAGEPAIRDEMARLEAVRDVCRGVAARLEQVVAAGERNVAELRRKGDPEVDEL 323
                 6788999999*************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2790.11
//
Query:       CDO68355.1  [L=482]
Description: hypothetical protein BN946_scf184815.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-76  257.8   1.0    1.5e-67  228.4   0.9    2.1  2  RNA_pol_Rpc34  RNA polymerase Rpc34 subunit
  ------ inclusion threshold ------
        4.1    6.1  13.5        6.5    5.5  13.5    1.4  1  Nucleo_P87     Nucleopolyhedrovirus capsid protein P87
          8    5.1  10.1         11    4.6  10.1    1.2  1  Presenilin     Presenilin


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc34  RNA polymerase Rpc34 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4   0.9   2.5e-71   1.5e-67       6     265 ..       4     248 ..       1     308 [. 0.91
   2 !   27.9   0.0   2.5e-10   1.5e-06     293     335 ..     433     475 ..     334     476 .. 0.78

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 2.5e-71
                    .-HHHHHHHHHHHHHCSSSSSHCCHHHHHHHSTTSHHHHHHHHHHHHHHCTSEECCC.STTSCECEE--CCCHHHHHTSXHHHHHHHHHHHHHXSS CS
  RNA_pol_Rpc34   6 aklqelkkrlleelrkaseqklfsqqdLqddipslslklllsavqeLldkkllvllknsndeLvyravsreeAkkktslsedeslVysiIeesGne 101
                    ++l+ ++++l++ + ++  +k + q++L+d+ip  ++k +l+a++ Ll ++l+v l+ + ++L+yravs++e + k++ls++e lV++ I+++Gne
     CDO68355.1   4 RQLNATERKLHKYALER-PDKVVNQKELEDLIP--DAKGRLAAINFLLGTGLFVVLESRGKGLSYRAVSHSEIDLKKGLSHEEGLVLDRIRAAGNE 96 
                    3689999******9999.*************65..7788999***************99999********************************** PP

                    XEEHHHHHHTTGXXHHHHHHHHHHHHHTTXXEEEEXSSSSSXEEEESSSTXXXXXXXXXXXXXSTTSSSSTHHHHHHHHHHHHHCHCSXSTT.... CS
  RNA_pol_Rpc34 102 GIwsrtiksklnLhksvvkkcLksLeskkyiksvksvkaptkkiYllanLePseevTGGpwftdgelDveFieeleeiifklvkqkssvsleqitq 197
                    GIw++ ik k++Lh+++v+kcLksL +k+++k v  v ++t+kiY+l+n+ePs e+TGGpw+td+elD+eFi  l  +++k+++ +s ++      
     CDO68355.1  97 GIWTKHIKVKTQLHQTIVDKCLKSLTQKQLVKTVTDVRHSTRKIYMLYNIEPSVEMTGGPWYTDKELDTEFIKMLSDVCLKIIRDRSLPKAR---- 188
                    ****************************************************************************************9965.... PP

                    ......SSS.SSHHHHHHHSSSSTXXBXSCHHHHHHHCSTTTSSSXSHCCHHHHHHHHCHSSSCEEET CS
  RNA_pol_Rpc34 198 kkeksgkkaekekkkalplaagyksyptveeiakfineagitkvrLseediqqlvevLvyDgklekvk 265
                        +     +     ++++    sy+ +e+i+ ++n++++t++ L++e ++ l++vLv+Dgk+ek+ 
     CDO68355.1 189 ----HV---DD-GRPRQLYPLAHVSYSNAEQILCLLNKSQVTETVLTVEHVNMLLDVLVLDGKIEKLP 248
                    ....22...23.345567888899*****************************************975 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 2.5e-10
                    XXXXXSSSSSTTXXSSXSSSSSXXTSSSSSSSSSSTTSSSSXX CS
  RNA_pol_Rpc34 293 vvqpealasglveapcgecpvfdlceeggavspkncvYlkeWl 335
                    v +++  + gl +apc +cp fd c++gg+v+p++c+Y + Wl
     CDO68355.1 433 VYEERIRGLGLDQAPCVRCPTFDFCQSGGPVNPQDCIYYEGWL 475
                    5566667788999*****************************8 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  13.5    0.0011       6.5     360     436 ..     273     347 ..     220     368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0011
  Nucleo_P87 360 iksepektleeklreklpsdlsaqssvpdkkseasavlptekrkRrrarklqelssdededssdekevDkekerkRR 436
                  k  ++ +++ k re l  d  +  + + +++  s + + ++rkRrr+r+ ++ + d ded++     D    rkR 
  CDO68355.1 273 SKRSKNASIKRKRREALDEDSDEDKRNKRRHHTVSRSSSRRDRKRRRSRHSDDEDTDTDEDDDSI--EDGKPRRKRS 347
                 3344466788889999999999999999999999999999*********9766665555522222..2333333332 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  10.1    0.0019        11     234     310 ..     272     348 ..     234     408 .. 0.49

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0019
  Presenilin 234 eseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeee 310
                  s+++++a+ k+++ +  ++++++++++++++++ s+s+++++++++++ +s++e ++++e++ s e  + ++++++
  CDO68355.1 272 RSKRSKNASIKRKRREALDEDSDEDKRNKRRHHTVSRSSSRRDRKRRRSRHSDDEDTDTDEDDDSIEDGKPRRKRSR 348
                 12222222222222222222222222222222222222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1515  (0.0845); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 3111.94
//
Query:       CDO68356.1  [L=93]
Description: hypothetical protein BN946_scf184815.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 651.85
//
Query:       CDO68357.1  [L=390]
Description: hypothetical protein BN946_scf184815.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-51  176.1   0.0    1.3e-51  175.9   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   7.1e-56   1.3e-51      39     394 ..      37     384 ..      30     390 .] 0.92

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 7.1e-56
                 EEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHC CS
        p450  39 lklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkages 136
                 l++ ++p+v+l+++eav  +l+k+g+  s+r    ++      f+    l++ ge+ k  R++++++l  + +  ++ +lve+e++ l++ l k+ ++ 
  CDO68357.1  37 LRVLNTPFVFLNSAEAVMDLLHKRGALYSDR-AHLTFGGEMCGFDDLVPLTKYGERFKLERKLMNQALGLS-AVeKWQPLVERETHLLLQHLTKSPEAF 133
                 67889********************888888.6666666677888888999999*****************.555******************999988 PP

                 SEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHH.HHHHHHHHHHHHHHHHHHHCHCHC CS
        p450 137 selditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklk.eavkklkdlldklieerretldsa 234
                      +++  ++a + i+s+++g ++  ++d+  ++ ++++e+  + +  ++  ++++f +l+++p+ +++k   + + kl+d +dk  +  ++  ds+
  CDO68357.1 134 -----AHHSKRFAASLIFSTIYGYHIAENDDPYVKDSEEFMEASAKAMTGPW--VVDFFTWLRWVPGLTFHKTAaQWRAKLDDWVDKPYRMFKALPDST 225
                 .....9****************************************999999..*************8887665166789******************* PP

                 SCSSCSHHHHHHHHCTTCTCT...SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHH CS
        p450 235 kksrrdfldalllakkekkge...sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikE 330
                   +r +f   lll++   +g+   +  ++  ++  ++ +++ G+dTt  tls+  + + ++Pev +k +  +d+vlg  r p+++d+ +lpy d +ikE
  CDO68357.1 226 -AKRISFCGNLLLDD---DGKfvcDAETEYRVKWLATSMYGPGSDTTVITLSMLVLSMCHYPEVLRKAQRQVDSVLGTERLPSFQDRPRLPYIDCIIKE 320
                 .689****9999997...555557778999999****************************************************************** PP

                 HHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSC CS
        p450 331 tLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgn 394
                 +LR  ++vp++ p+++ +d   rgy++p+G+ +i n++a+++d++++p+P  F peRF++++++
  CDO68357.1 321 VLRWETPVPMTPPHRLIQDDRYRGYDLPEGSFCIANMWAILHDETLYPDPLAFSPERFEKTDEA 384
                 ***********************************************************99873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2894.58
//
Query:       CDO68358.1  [L=766]
Description: hypothetical protein BN946_scf184815.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-64  216.4   0.0    5.1e-64  215.8   0.0    1.3  1  MKT1_C    Temperature dependent protein affecting M2 dsRNA re
    1.2e-29  102.4   0.0    2.9e-29  101.3   0.0    1.7  1  MKT1_N    Temperature dependent protein affecting M2 dsRNA re
    1.2e-07   32.2   0.0    2.7e-07   31.0   0.0    1.6  1  XPG_N     XPG N-terminal domain
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.082   13.3   0.0    2.0  1  XPG_I     XPG I-region


Domain annotation for each model (and alignments):
>> MKT1_C  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8   0.0   1.1e-67   5.1e-64       1     239 [.     522     762 ..     522     763 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.8 bits;  conditional E-value: 1.1e-67
      MKT1_C   1 RfLelrgyvdekheltkwGkaLakalkelk...eleealllaleLlrlgvLtgdenekpeysgapslgseeekksilLisRvasLlplrlkpigytgpl 96 
                 RfLelrg++ ++h ++++++a+++al++ +   +++++l+l+leL+r+gv++g+ ++ ++ sg+ps+g+++ek+++lL++Rv+s+lpl++kp  +++pl
  CDO68358.1 522 RFLELRGFLLNTHMHSPLARAMHTALRNARltdKFQDPLYLFLELVRAGVMHGHLWSGRAFSGGPSFGTDDEKSCMLLVMRVLSILPLNFKP--WSAPL 618
                 9*******************************99*******************************************************997..***** PP

      MKT1_C  97 srdllaFrslvkllrrslreliEavlvslllsgeanrerddwlelsssLPffldtntglGivvktyldellk........eeekstsgeakedalellk 187
                 sr+ll+F+s+v++l+r+lr+l+E++++++ll+++a+r rdd+l+++ sLPf++++ntg+G+++k+yld+l++        + + +  +eak+ al+ ++
  CDO68358.1 619 SRELLVFNSFVRSLTRALRTLLEVTSLNMLLRHDARRARDDLLDINLSLPFQTEVNTGFGVLAKVYLDALTHingrqrvrDPNAEGVREAKQMALDICE 717
                 *****************************************************************************99977788999*********** PP

      MKT1_C 188 kvfpnvedlkedlerafefwdavyalvkelseekliskellkefekadewle 239
                 ++fp v+++k ++er+f+fwd +       ++e ++  el+++fe+a++wl+
  CDO68358.1 718 ETFPGVKNPKMEVERGFRFWDVL-------HSEGAVLRELIDQFEAAEAWLA 762
                 ********************965.......555677778999*****99997 PP

>> MKT1_N  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   6.4e-33   2.9e-29       1      90 []     345     438 ..     345     438 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 6.4e-33
      MKT1_N   1 PnDlheylgqrLPeelyyylsrGligprilnaltsgelieeppldggdseeYrklvtdllt....eireqalnLltqrlhrfyqakdvkvkvwf 90 
                 P+Dlhe++++rLP+e+y+ylsrGl+gp+ l +lt+g++ie+ppld+g++ eYr++v+++ t     +r ++l+L+++ l++f+q++++  ++wf
  CDO68358.1 345 PSDLHEIFTHRLPDEVYFYLSRGLMGPHPLVWLTTGQIIENPPLDNGETTEYRRFVKEVITdgqtGPRATTLALMMSVLNPFWQSRKIMGHFWF 438
                 99********************************************************99989889***************************9 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   6.1e-11   2.7e-07      10      94 ..      22     110 ..      17     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 6.1e-11
                 HHHH-GEEEEEGGGGTTEEEEEEHHHHHHHHHHHS..E.ETTEE-BS..-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHH CS
       XPG_N  10 lkevaairsvsiealegkklaiDaslwlyrfliav..reqlgnalen..tshlmglfsrllrlldfgikPifVFdgkapdlkkeelekr 94 
                 l+e++ ++   +  l++ +l+iDas++l  ++ ++  re+l  a  +    + + ++s+l  l +++ikP+fVF+g  p+ + +++++ 
  CDO68358.1  22 LSERKHLQTHPLSVLSDSRLGIDASHYLATLIENPpsREPLLAATGGlpLALTTRIESDLRALEKLRIKPVFVFNGLLPSRRTKQQQQQ 110
                 666677778888999******************973355566666668778889999**********************6554444433 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05     0.082       2      93 ..     161     247 ..     160     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                 HHT--EEE-SS-HHHHHHHHHHTTSSSE.EE-SSSHHHHT.T-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCE CS
       XPG_I   2 lmgipyvvApgEAEAqcayLqkkglvda.viseDsDlllF.Gapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgc 93 
                 + +++++vAp+ A Aq+ yLq++ + +  +i   + +ll+ G  kv++ +      +     +   + ++ +++l+ lg+++eq++d+ illg+
  CDO68358.1 161 HRNVEFIVAPYVAWAQLIYLQRHSKSYIhAIYGPTETLLYpGVDKVITSVD---LVSP----NPMFSFVQKRSILNDLGVSEEQFLDVGILLGS 247
                 6799******************98855414445677777747779999995...4444....568999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5269.43
//
Query:       CDO68359.1  [L=1068]
Description: hypothetical protein BN946_scf184815.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-24   86.5   0.0    4.5e-24   85.2   0.0    1.6  1  DNA_ligase_A_M  ATP dependent DNA ligase domain
    4.9e-17   62.8   0.0    1.1e-16   61.7   0.0    1.6  1  DNA_ligase_A_N  DNA ligase N terminus
    7.4e-06   26.4   0.0    4.2e-05   23.9   0.0    2.1  2  RNA_ligase      RNA ligase


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   7.6e-28   4.5e-24      12     204 .]     300     544 ..     290     544 .. 0.82

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 7.6e-28
                     HHHHHTTTSEEEEEEEESSEEEEEEE..ETT...EEEEEETTS-B-GG...................GCHHHHHHHHHHBSTTESEEEEEEEEEE CS
  DNA_ligase_A_M  12 kalkkleekafivEiKyDGeRaqvhk..egd...kvklfSRrlkdita...................akpelvkalkeafkkdeksvilDGElva 82 
                     kalk   +++++vE+KyDGeRaq+h    +d   ++++fS +++d t                    a+p     ++    + ++sv++++E+va
      CDO68359.1 300 KALKG--ADKVWVETKYDGERAQIHVwlGEDavpHIRIFSKSGRDSTLdragihpvvydalgvrradALPLEAPDTEPPERPFQHSVVVEAEMVA 392
                     44444..57899*************54322223369***********99**************98885555555555555555568********* PP

                     EETTTTCBEHHHHHCHHHHCHC...........................CTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BT CS
  DNA_ligase_A_M  83 vdketgeilpfqklasrkkkkk...........................kveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkese 150
                     +    ++i +f  ++s + ++                               +   + +l l++FD+L ldg+sl++ p++eRr++Le+i++  +
      CDO68359.1 393 YSDVLERIDEFWRIRSLIGSTAigvrhkspppapystqaeatetqcsmiSNGSDGGTRHLALVFFDVLLLDGVSLLHFPYDERRSILETIIRTRS 487
                     **************99995555699999*****9999999888877766466666799*********************************7777 PP

                     TTEEE--EE.....EESSHHHHHHHHHHHHHTTECEEEEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 151 drvelaesl.....evkdveeleelleeaiseglEGlvvKnpdskYepgkrsknwlKvK 204
                     ++  lae++     +v++ e+l+e+++++i+++ EG+v+K   ++Y + kr + w+K+K
      CDO68359.1 488 GHAMLAERTciemgRVDTKEKLREAFAQVIADHQEGVVIKAERASYAE-KR-WPWVKLK 544
                     77766655422222789*****************************86.55.6****99 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   1.8e-20   1.1e-16       1     160 [.      11     206 ..      11     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.8e-20
                     BCHHHHHHHHHHCC..---HH..................HHHHHHHHHHHTS-.............SHHHHHHHHHHSS-CCC.S------HHHH CS
  DNA_ligase_A_N   1 pFaelaelfekiee.stkkrl..................ekrailanffrkves...........agpedlypalrLllPdyd.greygigesll 64 
                     pF+ ++e++++i++ +  + +                  +             +            +p   +++lrLl+P+ d  r+yg++e++l
      CDO68359.1  11 PFSFFVEFIQAIAAmKPHQATeaqprstryadtpayktfK-------------RwaaalreryapLPPGTTAIILRLLFPEEDvHRKYGMQETRL 92 
                     6899999999999933333335555555554443332220.............13333334556678888************************* PP

                     HHHHHHHHT--HHHHHHH..........HHHHS-HHHHHHHHHCCHHHH------BHHHHHHHHHHHH.....H-......STTHHHHHHHHHHH CS
  DNA_ligase_A_N  65 akalaealglskkkikda..........lakvgDlgevaeevlskrstlakkspltieevnelLdkla.....aa......gkgsedekkkilkk 138
                     a+ + ++lg+s+    +           ++ +g lg+ + +v+   ++ a+ s+l++++v++lL +la     +a        +s+  +++il++
      CDO68359.1  93 AQYITKILGISTS--THGrgerlknwnaEDALGCLGDEVNAVMTATPS-AHTSRLSLRQVDALLSELAassafSAetvrksTARSRRPREAILTE 184
                     ***********66..333467888887633367777777777766666.999***************9665551155555566678889****** PP

                     HHHHS-HHHHHHHHHHHCT--- CS
  DNA_ligase_A_N 139 llkraspeEakyliriilkdlr 160
                     ++ +++p+E   ++ iilkdlr
      CDO68359.1 185 IYTSLTPTESAIVTQIILKDLR 206
                     *********************9 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.26   1.5e+03      23      52 ..      32      60 ..       9      75 .. 0.74
   2 !   23.9   0.0   6.9e-09   4.2e-05       2     161 .]     307     544 ..     306     544 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
                EEEETTCEBCTTTHHHHHHTHHHHHHHHHH CS
  RNA_ligase 23 gvasRsqilpfgeekfkefkrwaaalrkkl 52
                 ++ Rs+ + ++++++k+fkrwaaalr+++
  CDO68359.1 32 EAQPRSTRY-ADTPAYKTFKRWAAALRERY 60
                566777777.788999999*****999853 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 6.9e-09
                 EEEEEEE-SSEEEEEEEE..TT....EEEEETTCEB.CTTTHHHHHHTHHHHHHHH...HHHHH...............ECCEEEEEEEES........ CS
  RNA_ligase   2 evvvtEKlDGtnfriylv..ke....vgvasRsqil.pfgeekfkefkrwaaalrk...klkekla.............neelilyGElig........ 69 
                 +v+v+ K DG++++i++   ++    ++++s+s+   + ++  +++  + a   r                         +++++  E++         
  CDO68359.1 307 KVWVETKYDGERAQIHVWlgEDavphIRIFSKSGRDsTLDRAGIHPVVYDALGVRRadaL-----PleapdtepperpfQHSVVVEAEMVAysdvleri 400
                 79****************873367889999999988535566676766666666664430.....23344567788889789*********76666555 PP

                 ....SS..TTSS................................................EEEEEEEEEEECTTBECE--HHHHHHHHH.......CCT CS
  RNA_ligase  70 ...hsikygglpk...............................................efyvFdifdirdkeeqrylspdevealak.......glg 111
                    +                                                         ++ Fd++ ++   +    ++de++ +++       g  
  CDO68359.1 401 defW--------RirsligstaigvrhkspppapystqaeatetqcsmisngsdggtrhlALVFFDVLLLD-GVSLLHFPYDERRSILEtiirtrsG-- 488
                 4441........0333333444444445556677777888999**************9998999****887.44889999****6666624433221.. PP

                 B..EEEEE.SSHHHHHCCC..............H.HHHTC--EEEEEESSSSBETTEBSEEEEE CS
  RNA_ligase 112 tvpvlyegkflaaeellel............l.l.skgnkrEGlVikpeselyknkgraifKvk 161
                 ++ ++       ++++ e+            + +     ++EG+Vik e+++y +k+  ++K+k
  CDO68359.1 489 HAMLA-------ERTCIEMgrvdtkeklreaFaQvI-ADHQEGVVIKAERASYAEKRWPWVKLK 544
                 33333.......333333333333344555544433.449**********99986668888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7333.35
//
Query:       CDO68360.1  [L=283]
Description: hypothetical protein BN946_scf184815.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-25   88.1   3.7    3.6e-24   84.8   3.7    2.1  1  Pirin      Pirin
    5.3e-09   35.7   2.4    5.5e-07   29.2   1.3    2.4  2  Cupin_2    Cupin domain
     0.0026   17.9   0.0      0.018   15.2   0.0    2.3  2  Pirin_C_2  Quercetinase C-terminal cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   3.7   6.1e-28   3.6e-24       9     107 ..      12     137 ..       5     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 6.1e-28
                 CC...TTCCEECTCEECCEEESS.S.ETT........................EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-E CS
       Pirin   9 gk..aaelqsvdpFlfldefdpaelevge........................edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdv 79 
                 g+  + +l+++++F+f+ ++ p +++ +                         ed++  ++gf++h hr++e+ +y+++Ge+ehrDs+Gn +v++ Gd+
  CDO68360.1  12 GHadHGWLKTFHTFSFARQVFPGRFHESClnlnildsyhdpehdhfgclrvinEDRVapHTGFGTHAHREFEIFSYVVSGELEHRDSMGNVEVMKRGDL 110
                 444578999999999999999999887768888999999999999999999999999999*************************************** PP

                 EEEE-TT-EEEEEEE-SSSS-EEEEEEE CS
       Pirin  80 qwmtAgsGivhsEmneeeeesleglqlW 107
                 q+ +Ag+Gi hsE+++ e +++++lq+W
  CDO68360.1 111 QMTSAGTGIRHSEYSHGE-KQVHFLQIW 137
                 *****************6.********* PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   1.3   9.2e-11   5.5e-07       4      70 ..      67     136 ..      64     137 .. 0.92
   2 !    5.2   0.0    0.0028        17      30      69 ..     237     279 ..     232     281 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 9.2e-11
                 EEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT..-EEEEEE-SSS-EEEEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag..tpHrfrNtgdeparllvv 70 
                 +++p++ ++ h H++ + f yV++Ge+e +   g++ ++++Gd+ ++ ag   +H    +g++++++l +
  CDO68360.1  67 RVAPHTGFGTHAHREFEIFSYVVSGELEHRdSMGNVEVMKRGDLQMTSAGtgIRHSEYSHGEKQVHFLQI 136
                 689*9********9999*************888****************9778999999******99876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0028
                 EEEE.ECTEEEEEETTEEEEE-T..T-EEEEEE-SSS-EEEEE CS
     Cupin_2  30 gelt.vdgeeveleaGdsvyfpa..gtpHrfrNtgdeparllv 69 
                 +++t  +g +++l +Gd +y+ a  g++ +++N g++ a++l 
  CDO68360.1 237 IRVTgAGGGPIDLWEGDGAYILAapGEELKVENVGSKVAEVLL 279
                 67777778888887777666644338***********999975 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.47   2.8e+03      42      60 ..      85     108 ..      73     126 .. 0.64
   2 !   15.2   0.0   3.1e-06     0.018       6      86 .]     179     282 ..     175     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
   Pirin_C_2  42 YlqvieGevevng.....eslaag 60 
                 +  v++Ge+e  +     e +++g
  CDO68360.1  85 FSYVVSGELEHRDsmgnvEVMKRG 108
                 556788888876633333333344 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.1e-06
   Pirin_C_2   6 dgrdgslkinQdarlyaakldegesleyela...agrkaYlqvieGe....vevngesla............agDGlaiedes....slsltaeedaev 81 
                  +++g   ++   +l+a+ l++ +sl +++     +rk+Y++v++ +     e++g +++            +gDG+ i  +     +++  +++ aev
  CDO68360.1 179 REASGPAPVHSPLNLFATLLSPAKSLAHSFLspsVQRKGYIHVVQTSgynpGEASGAQIRvtgagggpidlwEGDGAYILAAPgeelKVENVGSKVAEV 277
                 5567888999999***************98755578********9552233233333333446666666666*****9986654422455557888*** PP

   Pirin_C_2  82 LlfDl 86 
                 LlfD+
  CDO68360.1 278 LLFDM 282
                 ****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1926.50
//
Query:       CDO68361.1  [L=358]
Description: hypothetical protein BN946_scf184815.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-31  106.8  19.9    5.5e-09   36.5   0.3    5.6  6  WD40         WD domain, G-beta repeat
    7.1e-13   48.7   0.1     0.0011   19.2   0.1    3.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.1e-09   38.6   0.0      2e-09   37.8   0.0    1.5  1  NLE          NLE (NUC135) domain
    3.6e-05   22.6   0.1       0.07   11.8   0.0    3.1  4  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.015   14.3   0.0        0.2   10.6   0.0    2.6  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.9   1.8e+04      15      25 ..     110     120 ..     105     123 .. 0.78
   2 !   36.5   0.3   1.5e-12   5.5e-09       2      38 .]     136     173 ..     135     173 .. 0.95
   3 !   30.0   0.1   1.7e-10   6.1e-07       2      38 .]     178     215 ..     177     215 .. 0.85
   4 !   26.4   0.3   2.5e-09   8.8e-06       7      38 .]     226     263 ..     219     263 .. 0.77
   5 !   21.3   0.2     1e-07   0.00036       2      38 .]     268     309 ..     267     309 .. 0.85
   6 ?    4.4   0.1     0.022        80       1      16 [.     313     329 ..     313     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
                 EEEEETTSSEE CS
        WD40  15 slafspdgawl 25 
                 s+afsp+  ++
  CDO68361.1 110 SQAFSPEDVFV 120
                 67899988776 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 1.5e-12
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c  tl+GH s++ + +fsp g++la+Gs D++ r+Wd
  CDO68361.1 136 RCSSTLSGHtSPILCASFSPTGNLLATGSGDCNARLWD 173
                 6999*****999****************99*******9 PP

  == domain 3  score: 30.0 bits;  conditional E-value: 1.7e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ ++l+GH ++v ++ +    + la+G+ Dg vr+Wd
  CDO68361.1 178 TPSHVLSGHkGWVLCVEWEAMERKLATGGHDGQVRLWD 215
                 5789*****777****66666666****99*******9 PP

  == domain 4  score: 26.4 bits;  conditional E-value: 2.5e-09
                 EESS.SSEEEEEEETTSSE...........EEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw...........lasGsdDgtvriWd 38 
                 l+GH ++vtsl+      w           las+s+Dgtvr+W+
  CDO68361.1 226 LKGHtKWVTSLS------WepihlnssaprLASSSKDGTVRVWS 263
                 89**999****6......444444466666*************5 PP

  == domain 5  score: 21.3 bits;  conditional E-value: 1e-07
                 EEEEEEESS.SSEEEEEEETTSSE..........EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw..........lasGsdDgtvriWd 38 
                 +c +tl GH  sv+ +      +w          l ++s D+tvriWd
  CDO68361.1 268 RCEYTLGGHtASVNVV------RWgggglngkgvLYTASSDRTVRIWD 309
                 7999*****888**99......777777779997878877*******9 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.022
                 TEEEEEEESS.SSEEEE CS
        WD40   1 gqclrtltGH.ssvtsl 16 
                 g++l+tl+ H  +vt l
  CDO68361.1 313 GRPLHTLKDHaHWVTTL 329
                 689*****99556*999 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.4e-06     0.005      18      90 ..     117     196 ..     110     198 .. 0.86
   2 !   19.2   0.1   3.1e-07    0.0011      37      90 ..     186     239 ..     181     241 .. 0.92
   3 !    5.1   0.2    0.0078        28      38      90 ..     230     286 ..     227     288 .. 0.79
   4 !   14.4   0.1   9.9e-06     0.035      29      88 ..     261     330 ..     250     334 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.4e-06
  ANAPC4_WD40  18 ellvfRlngqrvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++ v     q v+++        + +++ s + + +++p g+lLa +  d + rl d  +++  h ls ++   v c++W+
   CDO68361.1 117 DVFVVHCAPQAVFKVrpatrcssTLSGHTSPILCASFSPTGNLLATGSGDCNARLWDLFTETPSHVLSGHKG-WVLCVEWE 196
                  5666666667888888887777767889999************************************99999.6******7 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.1e-07
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++ v +++W+  ++ La + +dg+vrl d ++gk +     +++k vt+l+W+
   CDO68361.1 186 HKGWVLCVEWEAMERKLATGGHDGQVRLWDPKTGKPIGDALKGHTKWVTSLSWE 239
                  5677999******************************9999999999******6 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0078
  ANAPC4_WD40  38 dsevrsLaWkp.....dgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   + v+sL+W+p     +   La + +dg+vr+ +  + ++  +l  ++ + v+ + Wg
   CDO68361.1 230 TKWVTSLSWEPihlnsSAPRLASSSKDGTVRVWSTLTRRCEYTLGGHTAS-VNVVRWG 286
                  56688899976333224568***************999999999888884.9999996 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 9.9e-06
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkp...dgk.lLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  vw++       +  ++  +v+ ++W     +gk +L  a sd +vr+ daesg+ +h+l+ +++  vt+l+
   CDO68361.1 261 VWSTltrrceyTLGGHTASVNVVRWGGgglNGKgVLYTASSDRTVRIWDAESGRPLHTLKDHAH-WVTTLT 330
                  5555555555555677788888888762224445999**********************99998.588876 PP

>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.5e-13     2e-09       1      53 [.      31      81 ..      31     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.5e-13
         NLE  1 vqvrFvtkded.eslavpgtplsvPasltrkqLselvnkLlk.eekpvpFdFlid 53
                + v+Fv+++ d ++l    + +++Pa+++r++L+ +vnkL   +e+pvpF+F i 
  CDO68361.1 31 IVVQFVSEE-DgQPL---APAVNLPANVSREGLEAIVNKLNTkDEDPVPFAFHIA 81
                679*****6.77***...**********************9987789*****985 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.26   9.5e+02     229     251 ..     156     178 ..     136     182 .. 0.81
   2 ?   -2.0   0.0       0.3   1.1e+03     239     252 ..     208     221 ..     202     223 .. 0.87
   3 !    6.9   0.2   0.00058       2.1     234     255 ..     251     272 ..     244     285 .. 0.87
   4 !   11.8   0.0     2e-05      0.07     229     257 ..     292     321 ..     276     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.26
                 TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgk 251
                 + ++l++ s d + r+W+l t +
  CDO68361.1 156 TGNLLATGSGDCNARLWDLFTET 178
                 5688899999999******9976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.3
                 T-EEEEEETTTTEE CS
      Nup160 239 dgkLrvWnlltgkc 252
                 dg +r+W+ +tgk+
  CDO68361.1 208 DGQVRLWDPKTGKP 221
                 99*********987 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00058
                 EEEETT-EEEEEETTTTEEEEE CS
      Nup160 234 falsrdgkLrvWnlltgkclat 255
                 ++ s dg++rvW++lt +c +t
  CDO68361.1 251 ASSSKDGTVRVWSTLTRRCEYT 272
                 56689*************9877 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 2e-05
                 TTTEEEEEETT-EEEEEETTTTEEEEE.EE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat.id 257
                 g+ +l+++s+d+++r+W+ ++g++l t +d
  CDO68361.1 292 GKGVLYTASSDRTVRIWDAESGRPLHTlKD 321
                 8889********************999776 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.5e-05       0.2     186     219 ..     144     177 ..     122     189 .. 0.84
   2 ?   -2.7   0.0      0.61   2.2e+03     201     214 ..     201     214 ..     186     218 .. 0.86
   3 ?   -0.8   0.0      0.16   5.9e+02     201     215 ..     249     263 ..     241     274 .. 0.75
   4 ?   -1.9   0.0      0.34   1.2e+03     262     288 ..     298     324 ..     293     334 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.5e-05
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvyle 219
                 ++s i +a+fsp G  lat s d   +++ ++ e
  CDO68361.1 144 HTSPILCASFSPTGNLLATGSGDCNARLWDLFTE 177
                 3468*************************99976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.61
    Ge1_WD40 201 alatasedGevkff 214
                  lat  +dG+v+++
  CDO68361.1 201 KLATGGHDGQVRLW 214
                 589999*****998 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.16
    Ge1_WD40 201 alatasedGevkffq 215
                  la +s+dG+v+ + 
  CDO68361.1 249 RLASSSKDGTVRVWS 263
                 578888888888875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.34
    Ge1_WD40 262 gadnnselklWscelWtClqtikfaps 288
                 +a+ ++ +++W +e+ + l t+k +++
  CDO68361.1 298 TASSDRTVRIWDAESGRPLHTLKDHAH 324
                 556666677777777777777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2545.24
//
Query:       CDO68362.1  [L=302]
Description: hypothetical protein BN946_scf184815.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   13.5   3.3      0.063   12.8   3.3    1.3  1  DUF3169   Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.3   3.5e-06     0.063       4     123 ..      90     214 ..      88     227 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-06
     DUF3169   4 llkfillmliggliGgiiGfllgafeaekgleelsaalkelllligskilpllliiavlvviisvvflrkakkllkkwdeeddeeseeeyeqiekklsi 102
                 ++++i+ +++g+++G+i+ f++g+  ++++ +++   +  +l ++++    +l + +   v+ +  + + ++ l+  ++++d    + + + i+  + +
  CDO68362.1  90 VWTLIVQVTLGAVVGAIVKFCFGMRVWRFSRHNIPVTMLIMLGTFSQLGSFALGLGMATDVVTAAALCYFLRGLKTGYNQDDSIVNTLTLYAINTGVIT 188
                 6899999****************************************8888888844444455555555566666677777666665555777764322 PP

     DUF3169 103 .glilssvsli....lsfllilasys 123
                  ++ ls++ l      +f++++++++
  CDO68362.1 189 sAISLSTLILYdlmpTNFIFMAFYFV 214
                 02222222222222235555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2110.39
//
Query:       CDO68363.1  [L=736]
Description: hypothetical protein BN946_scf184815.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-14   52.9   4.9    3.8e-09   36.5   0.1    3.2  4  HAUS6_N    HAUS augmin-like complex subunit 6 N-terminus
  ------ inclusion threshold ------
      0.048   13.2   1.7      0.086   12.4   1.7    1.4  1  Adeno_E1A  Early E1A protein
      0.087   12.0   0.8       0.23   10.6   0.8    1.8  1  SPESP1     Sperm equatorial segment protein 1


Domain annotation for each model (and alignments):
>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.7e-07     0.004       2      85 ..      12      98 ..      11     108 .. 0.86
   2 !   36.5   0.1   6.4e-13   3.8e-09      92     202 ..     137     239 ..     134     267 .. 0.77
   3 ?   -1.1   0.1       0.2   1.2e+03     145     177 ..     370     402 ..     347     425 .. 0.48
   4 ?   -3.1   0.3      0.77   4.6e+03     176     205 ..     539     564 ..     510     588 .. 0.47

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.7e-07
     HAUS6_N  2 ltnLllLgldplpd..pdksritfsedmfdkpnkkafeivlyfLFnkl..DpeeakkkFrpcwPplDkkqeaeFRkalvewLkeikee 85
                l++L+lL++  +p+     + + fs    +  + +a+e + yfL  k+  D+++a++ + p +P l    + +FR al ++++ i ++
  CDO68363.1 12 LLHLHLLNYPVRPEdaAGYNEHLFSPSRGMRERSNAMEDICYFLVGKIerDRDRARSIL-PSYPCLQPSDTTAFRIALAKYMEAIRNS 98
                6788888888888775566677788888888899**************99*********.***********************99876 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 6.4e-13
     HAUS6_N  92 pkvvstlllspgGekfielLlsfssfVlkkvlkekskklalevreaaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelrae 190
                  +v++++l+++ Ge+f+ l+l+fss+ ++k + +        +++a+s +    + ++   + +++ +l +++++   r  +++ a++l +++ +l++ 
  CDO68363.1 137 VVVRKSILDECAGERFERLVLAFSSHAVLKNVTRMPD----ALVQAQSSSG-VEQVTSNTLSKAYTALLAAAQSE---RLGWERSAASLLQRQAALATI 227
                 689***********************99999987777....3333333333.55666667777888999999999...********************* PP

     HAUS6_N 191 leelqaelkaek 202
                 +++l ++  a++
  CDO68363.1 228 RARLADQRHASS 239
                 ***999887432 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.2
     HAUS6_N 145 lsklvaahrvslrrflrekaaadrarqkyqena 177
                 +++  aa++  +r +++++aaa  + +k+++++
  CDO68363.1 370 VEERLAAIEEMHRSLQEALAAAQGLHTKLSQRL 402
                 333333333333333333333322222222222 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 0.77
     HAUS6_N 176 naqllekkerelraeleelqaelkaekeaa 205
                 +++  e+++r  ra++ + q++     e+a
  CDO68363.1 539 RVRIAEDSVRTTRARETAGQSNE----EKA 564
                 33333333333333333322211....111 PP

>> Adeno_E1A  Early E1A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.7   1.4e-05     0.086     184     248 ..     477     541 ..     448     561 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
   Adeno_E1A 184 yspvsepepepepepeparptrrpklvpailrrptspvsrecnsstdscdsgpsntppeihpvvp 248
                  s v+ep pepepep+p       +l  a  r  ++   r+  + t  +d+    t  +i   v 
  CDO68363.1 477 PSFVAEPSPEPEPEPDPIPNVLATRLPQASSRVRSAEAGRKHSAPTRGVDTSKITTATQITSRVR 541
                 5789*************999999999999999999999999999999999999999988877665 PP

>> SPESP1  Sperm equatorial segment protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   3.9e-05      0.23     123     170 ..     481     536 ..     467     583 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.9e-05
      SPESP1 123 kePepepePelepev..eeeeskqlsea......sesstspavtsakpsvvtlkks 170
                  eP pepePe++p +    +   q s         ++   p++   +++++t +++
  CDO68363.1 481 AEPSPEPEPEPDPIPnvLATRLPQASSRvrsaeaGRKHSAPTRGVDTSKITTATQI 536
                 44444444444443310222222222222323333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5113.98
//
Query:       CDO68364.1  [L=91]
Description: hypothetical protein BN946_scf184815.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-08   34.6   1.2    3.6e-08   33.5   1.2    1.6  1  Ribosomal_L37e  Ribosomal protein L37e


Domain annotation for each model (and alignments):
>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   1.2     2e-12   3.6e-08      31      54 .]      28      51 ..      24      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2e-12
  Ribosomal_L37e 31 kktCascGypsaklrkynWsaKak 54
                     ++Ca+cGyp+aklr+y+W++Kak
      CDO68364.1 28 STRCAQCGYPRAKLRSYEWGQKAK 51
                    679*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 674.76
//
Query:       CDO68365.1  [L=207]
Description: hypothetical protein BN946_scf184815.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.7    6.0   5.4        4.3    5.8   5.4    1.2  1  RRN3      RNA polymerase I specific transcription initiation 
        7.7    7.5  14.8       0.55   11.2   3.2    2.3  2  DUF1764   Eukaryotic protein of unknown function (DUF1764)


Domain annotation for each model (and alignments):
>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.4   0.00048       4.3     222     311 ..      53     140 ..      24     168 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00048
        RRN3 222 deedeeleeeleededdedddeddeesdlddlssdeeaeedeekdeeeeslkkikelvekLDailtllfehlekkfssestkeeeeeeeg 311
                 +e++ee  ++ ++  ++++++ d e  d dd+++de++   + + +   + k+++e++e+ D ++  + + l++ +++ s+++ ++++++
  CDO68365.1  53 EESEEEPPKKRARRPRQSKAQRDAEGIDVDDEEDDEGKPRRQ-RRSTGGRRKRLEEMLERTDRLMAGVKRGLDE-MRAGSQEQPQSSQQQ 140
                 223333333322334455555566667777766665555554.333346789********************99.333333333222222 PP

>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   4.6     0.068   6.1e+02      44      77 ..      52      85 ..      21     110 .. 0.51
   2 ?   11.2   3.2   6.1e-05      0.55      10      75 ..     122     193 ..     102     196 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.068
     DUF1764 44 kkkkkkkeeekkfedseskkrrktedGlpvYtee 77
                +++++++  +k+ ++++++k ++ ++G+ v +ee
  CDO68365.1 52 QEESEEEPPKKRARRPRQSKAQRDAEGIDVDDEE 85
                2222222223333333333333333333332222 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.1e-05
     DUF1764  10 eideifseskkkkkekekeeeeeekekkkkskkkkkkkkkkeeekkfedse......skkrrktedGlpvYt 75 
                  +de+ + s+++ +++++++++++++++++ + ++ k+++++++ + ++ +       ++++   dG pv++
  CDO68365.1 122 GLDEMRAGSQEQPQSSQQQQSSSSQQQAQQPQPSSPKQQQQQQSGEGSSTAapavplARQEKGARDGAPVWH 193
                 456666666666555555555444444333333333333333332222222567888899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2305  (0.128563); expected 358.6 (0.02)
Passed bias filter:                      834  (0.0465168); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 1304.76
//
Query:       CDO68366.1  [L=270]
Description: hypothetical protein BN946_scf184815.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-47  161.7  15.7    1.2e-45  156.5  15.7    2.1  1  Opi1       Transcription factor Opi1
    2.9e-05   23.3   0.1    6.6e-05   22.1   0.0    1.6  2  Perilipin  Perilipin family
  ------ inclusion threshold ------
       0.12   12.2   0.0        0.2   11.5   0.0    1.3  1  REF        Rubber elongation factor protein (REF)


Domain annotation for each model (and alignments):
>> Opi1  Transcription factor Opi1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5  15.7   2.1e-49   1.2e-45       2     234 ..      53     253 ..      52     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 2.1e-49
        Opi1   2 vrrvsslplvgsavRvYesgkassrvvkYgAelvEssvktiskpvidrlavsvtPssvnqldefasrqLDrldkirrastgapPlspksptsefeslks 100
                 + rvs++plv sa+R+Ye++kassrvvkYgAe++Essvk+is+pvidrl     P  v q+d+fa+rqLDrl+++ r +  +  l ++sp+    +   
  CDO68366.1  53 LSRVSNIPLVNSALRAYEQSKASSRVVKYGAEMMESSVKSISRPVIDRL-----P--VGQIDDFACRQLDRLGSYARRTSSTSRLRNESPDPRRSRE-- 142
                 679**********************************************.....9..******************9877777778888887654444.. PP

        Opi1 101 tiddvqasdaesstssvdvdedrgrlrlrtktldgsiasnresavledeepallkstsssstsaaasrstsepvderdataatpagslregaptaRsrW 199
                    dv    + ++ts     e    +r    ++ g    ++++ + +++       t+ ss+s  a+++t  p + +  t+ + a++ +++a+  RsrW
  CDO68366.1 143 -SRDVSM--TRGETS-----ERVQSPREDDDSMRGV--REGGRGLSQSRT-----PTPHSSASDQAEKPTLPPASTL--TQHADAQESQQVAQ--RSRW 222
                 .455555..222222.....2233344444444444..444555555533.....2333444444444554344333..33445566666665..**** PP

        Opi1 200 qavLleatslAGGlgaalseesmkrLkYCLhwLqy 234
                 qa++le    AGGl+aa seesm+rL+YCL+wLq 
  CDO68366.1 223 QAMILE----AGGLSAAFSEESMRRLRYCLQWLQV 253
                 ******....************************7 PP

>> Perilipin  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.1e-08   6.6e-05       7      86 ..      52     118 ..      47     120 .. 0.91
   2 ?   -2.7   0.1      0.38   2.3e+03     190     226 ..     205     241 ..     194     255 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.1e-08
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Perilipin   7 vvqRvanLplvsstyelvssaYsstKeshPllksvceaaEkgvktltaaaltgaqPildkLepqiataneyAckgLDkle 86 
                  ++Rv n+plv+s+      aY + K s  ++k   e+ E++vk+++       +P++d+L   +  ++++Ac+ LD+l 
  CDO68366.1  52 SLSRVSNIPLVNSAL----RAYEQSKASSRVVKYGAEMMESSVKSIS-------RPVIDRL--PVGQIDDFACRQLDRLG 118
                 689**********97....68***********************996.......79*****..67889**********95 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.38
                 ----TT--HHHHHHHHHTT-EEEEGGGS-HHHHHHHH CS
   Perilipin 190 aeavegseeasveeqkkkpsyfvRLGsLSaklrerAy 226
                 +++++ +e+++v++ ++ + ++   G LSa ++e ++
  CDO68366.1 205 TQHADAQESQQVAQRSRWQAMILEAGGLSAAFSEESM 241
                 4444555555556666667777777777777766655 PP

>> REF  Rubber elongation factor protein (REF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.3e-05       0.2      15      60 ..      56     101 ..      50     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.3e-05
         REF  15 vaaiqavvcvsslYeyAkensGpLkpgvdtvEgtVktvvgPvyekf 60 
                 v  i  v    + Ye +k +s  +k g + +E++Vk++  Pv++++
  CDO68366.1  56 VSNIPLVNSALRAYEQSKASSRVVKYGAEMMESSVKSISRPVIDRL 101
                 5566677777889******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1807.93
//
Query:       CDO68367.1  [L=174]
Description: hypothetical protein BN946_scf184815.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1322.74
//
Query:       CDO68368.1  [L=200]
Description: hypothetical protein BN946_scf184815.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        8.1    6.5   7.8        2.9    7.9   1.4    2.2  2  Herpes_capsid  Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.4   0.00016       2.9     101     127 ..      12      38 ..       4      51 .. 0.65
   2 ?    2.1   0.6      0.01   1.8e+02      94     137 ..     118     158 ..     107     167 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00016
  Herpes_capsid 101 tvPPetaegttgGgsd.ssasGasGgsa 127
                     +P   a  ttgGgs+ ss+sG sG   
     CDO68368.1  12 RIP-RLAARTTGGGSNaSSTSGGSGDGQ 38 
                    456.555666666655167888777543 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.01
  Herpes_capsid  94 afealsltvPPetaegttgGgsdssasGasGgsastlsSgpsss 137
                    ++++ ++t PP  a   t G+s  s s + G   s   S p+ s
     CDO68368.1 118 TYDSFAVTRPPSVA---TTGSSTCSRSQSRGKVHSWSFSPPKPS 158
                    67888888886555...444444444455555444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1516.28
//
Query:       CDO68369.1  [L=615]
Description: Glycoside Hydrolase Family 45 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-09   35.6   0.0    0.00065   18.4   0.0    2.5  2  AATase    Alcohol acetyltransferase
  ------ inclusion threshold ------
      0.029   14.6   0.0      0.063   13.6   0.0    1.5  1  DPBB_1    Lytic transglycolase


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.3e-08   0.00065       3     167 ..      11     141 ..      10     143 .. 0.88
   2 !   14.3   0.0   1.2e-06     0.011     216     437 ..     171     379 ..     163     398 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.3e-08
      AATase   3 GslEkyfvvrnrqklysnfsvyaelnk....evdkeqLalalrslilknpiLaaniipkkfpeheayyssdeyyskPfpkeDyvkv.iekiklddvvln 96 
                 G+ E++f +r r+     ++v+a+++     ++d+  L  al++++  +p La++ +p          + ++  + P      v v i+ ++l+++v  
  CDO68369.1  11 GRFEQFFHARARLSWLLWVVVTAKYQRdnemALDRMTLFTALQRVVYTHPALACRLVP----------NPEDPGKLP-----LVWVrIPAVDLNKIV-- 92 
                 899**********************753333689***********************9..........777888888.....5554269********.. PP

      AATase  97 eqpeysellekileeykdddekvdeelnellselvipvgdpkkPlwrlivlpsaddkkkwkkfvfitdHll 167
                               e++++d +  ee++e l +  +++ d+  P w+l+vl +          +f++ H++
  CDO68369.1  93 --------------EFRHEDSSSLEEILESLYAAPLQLPDDV-PCWKLLVLCD-------GTIIFAYQHTI 141
                 ..............***************************9.********99.......36779999875 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.2e-06
      AATase 216 ieekvdyrpsllalpklllvsfiasklnfkkseekpltkehsavqksnkshqiilkispeevkkirakikknvhgkatlTpflqavffvalyklgklfk 314
                 +e+ +d+ +++  l  +l++ f  s l+ +    +    + +av +++++  ++l++s +e +++ + ++ +   ++tlT  l+  ++v l +l     
  CDO68369.1 171 LEDCMDVSVPFGVLVGALVMDFTPSFLRKDYMAWSGKPIPLAAV-HGATI--RVLRYSAQETQHLLEISRAH---NTTLTGTLHTLALVVLSRLIRALP 263
                 56666677777777777777766666665554333333334444.44444..59******************...*****************9765444 PP

      AATase 315 eknsevsidvaipvntRrylpedeevrdsykYgtvv.ggseFsylissldieeds..kekl.welveeyhkrlseslsngkelkglgtlildlllky.. 407
                       si   +p + Rry    +       +   v + +++ +l+   d +e s   +++ w+ +++++  l+e  + +++ +++g      llky  
  CDO68369.1 264 DARDYRSIGTTVPLSLRRYTGTPPI-----AFCNHVsAYTDYHPLLTIADDPEASlsVHNFpWDIAAKLSATLKE--KAPSSASTIG------LLKYls 349
                 4455568999*********988877.....444444156788888888877766422688889999999999999..5555555555......334311 PP

      AATase 408 vnidkllkkkilktkrstaevsNlGlfsqe 437
                  + +k+l k + +++ + +e+sNlG f+ +
  CDO68369.1 350 GEYEKYLLKFLGQKRPAALELSNLGPFPVN 379
                 5789*********************98864 PP

>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     7e-06     0.063      12      62 ..     457     525 ..     446     541 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7e-06
                 C......-TTSSB--TTS-EEE-SSS-TT-EEEETT--EEEEEEEE----..................STTECEE CS
      DPBB_1  12 g......tacGecyevkcltaahktlplgtycrvlsgksvtVtitDrgpf..................ppgrhiD 62 
                 g       acG c+ ++   ++++++  ++  +     +++V++tD +p                    ++ h+D
  CDO68369.1 457 GpglgpgDACGRCFALTG--SKDPYS--PS-FSG-PFHTIVVKVTDLCPVqgnqewcgqsrsnalnqhGESVHFD 525
                 44455559*******999..677773..33.333.1589**********97666666666666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4264.19
//
Query:       CDO68370.1  [L=473]
Description: hypothetical protein BN946_scf184815.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-82  276.6   0.0    3.2e-82  276.3   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
  ------ inclusion threshold ------
       0.05   12.8   0.0      0.095   11.9   0.0    1.4  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.3   0.0   3.6e-86   3.2e-82      13     404 ..      30     462 ..      23     464 .. 0.90

  Alignments for each domain:
  == domain 1  score: 276.3 bits;  conditional E-value: 3.6e-86
                  EEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHHHH CS
  Aminotran_3  13 itkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlarky 110
                  ++ aeG y+t ++gkr++D+v++ av+ +G+ hP+v ka+keq++k+s+v    l+nepa++la+ ll++  + ++ v ++  GseA+e+ +K+ar+y
   CDO68370.1  30 ASSAEGIYVTLENGKRLIDAVGGAAVACIGNGHPAVKKAIKEQVDKVSYVYNMQLSNEPAEELAHHLLEASKGAFELVGFVSGGSEAMEGVIKTARQY 127
                  5679********************************************************************************************** PP

                  HHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB..-TSEEEE-TTBGGGTB-HHHHH.HHHHHHHHHHH....CHTCCCEEEEEE-S. CS
  Aminotran_3 111 arekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpf..lpevvrlkypdeevlkeneeee.aalleeleale....kkkkdevaAvivEp. 200
                   +e+++++++++ia + +fHG+t+++ls++ + +  ++ + ++  + +++++  ++  + k  +e+e + +++  ++le    +   ++v +++ E+ 
   CDO68370.1 128 FYETGQPQRKNFIARQLSFHGNTVATLSLAYH-PTRRAPYAAIldTENFHHVSPAYAARFKGADETEeQYVERLRKELEdkfiELGPNTVIGFVAETv 224
                  ******************************99.88888888887778888888887777666554440333333344556668999***********5 PP

                  CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC..TS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS....B--TT CS
  Aminotran_3 201 iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha..gvspDlmtlaKaltgG.lplsavlataevmqalapgs....hgsTf 291
                  + +  Gvv+a+ +++++++++c+k+++l+i DEv++G+Gr G+l A e++  g+spDl ++aK+l+gG  ++ avl  + v++ +++ s    hg+T+
   CDO68370.1 225 VGATTGVVAAPRGYFKAMKSVCDKYGALFILDEVMSGMGRMGTLHAWESYgdGISPDLQAIAKGLGGGyASIGAVLMSKRVASGVRDASgfwkHGHTY 322
                  55568*********************************************999***************889**************99999******** PP

                  TT-HHHHHHHHHHHHHHHHTTHHHHHHHH.....HHHHHHHHHHHCTT-.TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCT CS
  Aminotran_3 292 gGnplacavalavleiieeekllenaqel.....gaalkegLeelqkky.evikevRgkGlmiaielkeeaevke............keilkkakekG 371
                   +nplaca++lav ++i++e+llen++ l     ga l+e+L+ +++    ++ +vRg G+  +ie+  ++ + +             ++ ++a+e+G
   CDO68370.1 323 QANPLACAASLAVQKVIADENLLENVRTLiaptmGALLRERLQGANAPArPFVFDVRGGGAWWGIEFDFDVPEAQrldlaklgqpftMAVQARALENG 420
                  *************************986433333999*******9999889*****************99997779**********98999******* PP

                  EE-EEETT.........TEEEE---TT--HHHHHHHHHHHHH CS
  Aminotran_3 372 vlilsaGd.........nvirllppliitdeeidelleilkk 404
                  ++i+++           + + l p++ +t+e+i e+++ +++
   CDO68370.1 421 LIIMGFTGgasldgtkgQHCMLSPAYNVTKEQIVEIVDGFVR 462
                  ***9874334666778899*****************998875 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.1e-05     0.095     153     282 ..     221     352 ..     183     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
                    EEESS-TTT--B-.-HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTHHH.HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHH CS
  Aminotran_1_2 153 lvesphNPtGtva.tleeleklldlakkynlllfvDeaYagfvfgsl.davat.ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrk 245
                    + + +   tG+va ++   +++ ++++ky++l ++De+ +g+    +  a++    +++++   +i+ +l+  +++ G    ++l +++v+s +r+
     CDO68370.1 221 AETVVGATTGVVAaPRGYFKAMKSVCDKYGALFILDEVMSGMGRMGTlHAWESyGDGISPDLQ-AIAKGLGGGYASIG----AVLMSKRVASGVRD 311
                    5555566677664156667888999****************9987655777755566666666.88888887777777....************** PP

                    HHHHHTS..SHHHHHHHHHHHHHHHHHHH..HHHHHHHHHH CS
  Aminotran_1_2 246 lsrpfls..ssllqaavaaalsdallkqs..eleemrqrlq 282
                    +s ++    + ++ +++ aa  ++++++   +l e++++l+
     CDO68370.1 312 ASGFWKHghTYQANPLACAASLAVQKVIAdeNLLENVRTLI 352
                    **999888866666666666666666655577777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3273.46
//
Query:       CDO68371.1  [L=308]
Description: hypothetical protein BN946_scf184815.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-09   38.5   0.0    2.6e-09   37.4   0.0    1.6  1  HAD_2           Haloacid dehalogenase-like hydrolase
    7.5e-09   36.2   0.0    1.2e-08   35.6   0.0    1.3  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0027   17.8   0.0     0.0076   16.3   0.0    1.8  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   4.3e-13   2.6e-09      78     178 .]     163     273 ..     153     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.3e-13
       HAD_2  78 vkpydgvkelLeeLkeagyklgivTsksreaveekleqlgies......yFdvivtsedvekkKPdpeviekalekl....klkkeeviyvGDsp.tDi 165
                  +p+++   +L +L ++ +kl i ++ +r+++ +  + l+  +       Fd ++t+e+v+  KP+pe++  al++l    +++++ev++   s  +Di
  CDO68371.1 163 WQPFPDTVAALASL-SKHFKLIILSNIDRDTIAKTRRLLEGPDparplfTFDAVYTAEEVGAYKPAPEMLTYALKHLeedfGIQQDEVLMTAQSMpHDI 260
                 689***********.99**************9999999987654444447*************************999999*********999999*** PP

       HAD_2 166 eaakkagikviav 178
                 + ak+ g++++++
  CDO68371.1 261 IPAKARGLDTAWI 273
                 **********996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.9e-12   1.2e-08       1     195 [.      10     251 ..      10     265 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.9e-12
                 SSEEEEESBTTTBCHH.HHHHHHHHHHCHHHHHHHHHH...........HHCHHHHHH.HHHHHHHHHHH.HHHHHETTTE...........HHHHTHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxx...........xxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttge.psvedvivsaalalaaaletg...........sehpigkal.vaaakarsgal.tgfatfigrg...........ayaigkp 74 
                 +k+++fD+ GTL+ ++ + v +++ +   al +  etg           s  p  k   ++a+  ++ +l ++f t+               +      
  CDO68371.1  10 YKALIFDCYGTLIVSTsSPVLTFTSQG--ALLQDWETGiydhlrplfqkSGNPSDKVTvIKAYSSVEHDLeARFPTMR--YtdllakvygtvE-----A 99 
                 69***********66645555555555..7999999999998888888877777777755556666555556666633..2346666334442.....3 PP

                 HHHHHH...........HCHHHHHHHHHHHHHHCHHHHHH..........TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH CS
                 xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  75 ewltal...........dippdlgaaigsaqsqgrtvall..........qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraa 152
                 ++ +++           + +p + +a +s   q   +a +           + a a      +++++p+++ a+asL +  +++++l++ ++ t  ++ 
  CDO68371.1 100 RLQNREtppdalrddlsTANPVVASAHSSSGMQQVASASVgtsahaqsdsPGPAEAFARSVPTWQPFPDTVAALASLSK-HFKLIILSNIDRDTIAKTR 197
                 3333332222223325666666666666666666666666999999987733444444444566699999999999994.479***********99999 PP

                 HHTT.......GGGESEEEEHHCESSTTTSHHHHHHHHHHHT....STGGGEEE CS
                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF
   Hydrolase 153 nqlG.......ddyfdaviasdietvakpspegkvaaireLq....gkpeevam 195
                 + l          +fdav+++++++  kp pe++ +a++ L     ++  ev+m
  CDO68371.1 198 RLLEgpdparpLFTFDAVYTAEEVGAYKPAPEMLTYALKHLEedfgIQQDEVLM 251
                 9977799*97666669999999999****************7566577888888 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0076       4      48 ..     225     273 ..     223     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
                     TTSSHHHHHHHHHH....---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   4 KPepemydfalevl....gsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                     KP+pem+ +al++l    g++ +evlm   ++ +Di+ A++ G++++ +
      CDO68371.1 225 KPAPEMLTYALKHLeedfGIQQDEVLMTAQSMPHDIIPAKARGLDTAWI 273
                     9*************66666669**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2075.09
//
Query:       CDO68372.1  [L=1160]
Description: hypothetical protein BN946_scf184815.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-42  144.0   0.1    9.2e-42  142.6   0.0    1.8  1  AAA              ATPase family associated with various cellul
    2.7e-28   98.3   0.0    6.5e-28   97.1   0.0    1.7  1  DRMBL            DNA repair metallo-beta-lactamase
    2.2e-09   37.1   0.6    4.9e-09   36.0   0.1    1.9  1  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    2.1e-07   30.6   0.1    5.2e-07   29.4   0.1    1.6  1  AAA_lid_3        AAA+ lid domain
    4.5e-07   29.6   0.0    1.8e-06   27.7   0.0    1.9  2  Lactamase_B_2    Beta-lactamase superfamily domain
    1.1e-06   28.6   0.2    7.2e-06   26.0   0.1    2.4  1  AAA_5            AAA domain (dynein-related subfamily)
    2.1e-06   28.2   0.0    0.00067   20.1   0.1    3.2  3  AAA_16           AAA ATPase domain
    2.3e-05   24.2   0.0    9.1e-05   22.2   0.0    1.9  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.1e-05   24.2   0.0    0.00011   22.4   0.0    2.0  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0016   18.7   0.1      0.022   15.0   0.0    2.4  2  AAA_22           AAA domain
     0.0043   16.4   1.6     0.0082   15.5   1.6    1.4  1  DUF3450          Protein of unknown function (DUF3450)
     0.0043   16.3   0.2      0.023   13.9   0.0    2.1  2  TIP49            TIP49 P-loop domain
     0.0054   15.9   0.0      0.011   15.0   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
     0.0061   16.6   0.1      0.042   13.8   0.0    2.1  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0072   16.7   0.0      0.043   14.2   0.0    2.2  2  RNA_helicase     RNA helicase
     0.0072   16.9   0.0      0.023   15.2   0.0    1.9  1  AAA_18           AAA domain
     0.0084   15.7   0.0      0.027   14.1   0.0    1.8  1  Prot_ATP_OB_N    Proteasomal ATPase OB N-terminal domain
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.022   14.2   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.014   14.9   0.0      0.032   13.7   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.021   14.5   0.0      0.044   13.5   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.026   14.2   0.1       0.15   11.7   0.0    2.1  2  AAA_24           AAA domain
      0.031   14.4   0.0      0.065   13.4   0.0    1.5  1  AAA_33           AAA domain
       0.04   13.8   0.0       0.13   12.2   0.0    1.9  1  AAA_3            ATPase family associated with various cellul
      0.041   14.4   0.1        5.1    7.5   0.1    2.3  2  AAA_23           AAA domain
      0.045   13.4   0.1       0.27   10.9   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
      0.053   13.6   0.0       0.16   12.0   0.0    1.8  1  AAA_14           AAA domain
       0.06   13.1   1.7        1.1    9.0   0.0    2.5  2  AAA_11           AAA domain
      0.063   13.5   0.0       0.18   12.0   0.0    1.8  1  AAA_28           AAA domain
      0.072   13.1   0.4       0.25   11.3   0.3    1.9  1  Lactamase_B      Metallo-beta-lactamase superfamily
      0.077   12.4   1.7       0.13   11.6   1.7    1.3  1  HBM              Helical bimodular sensor domain
      0.078   12.4   0.1       0.14   11.6   0.1    1.3  1  PhoH             PhoH-like protein
       0.12   12.0   0.0        0.3   10.8   0.0    1.6  1  AAA_30           AAA domain
       0.14   12.6   2.6       0.31   11.4   2.6    1.6  1  DUF4200          Domain of unknown function (DUF4200)
       0.15   11.2   0.1        0.5    9.4   0.0    1.8  2  Parvo_NS1        Parvovirus non-structural protein NS1
       0.19   11.3   0.5       0.51    9.9   0.1    1.8  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.0   1.8e-44   9.2e-42       1     132 []     944    1077 ..     944    1077 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 1.8e-44
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteld 94  
                  vllyGppGtGKTlla+ava +l+++fl++  s +++ky+ges++ +re+f  a+e++ p+++f+DEida++++r    +s+++e +r++ +Ll+++d
  CDO68372.1  944 VLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYAREHE-PCVIFMDEIDAIGGRRfseGTSADREIQRTLMELLNQMD 1039
                  79******************************************************8.****************986666888889*********** PP

                  HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA   95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132 
                  g+++  +++ +i+atnrpd+ldpallr gR+drkiei+l
  CDO68372.1 1040 GFDSL-GRTKIIMATNRPDTLDPALLRpGRLDRKIEIPL 1077
                  ****6.77****************************985 PP

>> DRMBL  DNA repair metallo-beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   1.3e-30   6.5e-28       2     109 ..     629     754 ..     628     755 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 1.3e-30
       DRMBL   2 elesllttdpseaqihlvslkklekeklekylkalkekfdsvlafrPtGWtkkekkkkdlekikess..................ksrekisiyrvpYS 82 
                 el+ llt dp+   +hlv+l+ +  ++l++y++  k ++++v++frPtGWt+ +++ +d     + +                  +s+  +++y+vpYS
  CDO68372.1 629 ELHALLTGDPEAGGVHLVPLGVIASDRLKQYVDRWKGRYSKVIGFRPTGWTYTQPNGSDNMPSIPAVisrsqsrtftyanlqpmrNSTSTLQVYGVPYS 727
                 7899***************************************************8887775555559999**************************** PP

       DRMBL  83 eHSSfrELkefvkslkpkkiiptVnvg 109
                 eHSSf EL+ f+ sl + ++i+tVnvg
  CDO68372.1 728 EHSSFFELTCFALSLDWGRMIATVNVG 754
                 *************************97 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   9.6e-12   4.9e-09       1      57 []     831     886 ..     831     886 .. 0.98

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 9.6e-12
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     +++V + ldd er iVk ss+  +vvs    +p ++L+ g++V++d +t  i+ +LP
      CDO68372.1 831 IGEVMKQLDD-ERFIVKASSGPRYVVSYRPTLPVDKLKMGTRVSLDMTTLTIMRILP 886
                     7999******.*********************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1     1e-09   5.2e-07      10      44 ..    1106    1140 ..    1100    1141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1e-09
   AAA_lid_3   10 rTeGySGADlaalcreAallAlrrgikeitmedfe 44  
                  +++G+ GADl +++ eA++ A+r++++ i +ed+ 
  CDO68372.1 1106 LSDGFNGADLRNVITEAGMFAIRDDREYIIQEDLT 1140
                  689*************************9999985 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   3.4e-09   1.8e-06      27     171 ..     381     529 ..     367     545 .. 0.81
   2 ?   -3.1   0.0       8.8   4.5e+03      56      87 ..     942     972 ..     935     988 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.4e-09
                    -..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEE.CSTTEEEEEEEE-EE--C...TC CS
  Lactamase_B_2  27 elppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfel.gdggleitatparhksgr...rl 118
                     +p + a +lthaH DH+++l    +      p+y+++g++  + + +      ++ +  v +l  ++++++ + gg+++t+++a+h  g     +
     CDO68372.1 381 AIPNVTAYFLTHAHSDHYTNLSANWK---A-GPIYCSEGTANLIIHMLG-----VD-QKWVYPLPMDTPTTIpNTGGVQVTLIEANHCPGSclfLF 466
                    5789999***********87555444...2.58*******999988854.....33.346779*********96679*************9*9*88 PP

                    CE-TTTSEEEEEE.......CTTEEEEEESS-S---HH.HHHHHCT..-SEEEEE-S-SSTTH CS
  Lactamase_B_2 119 drnagdtlGlrie.......gggkrvyyigDtgyipee.igerlgg..adllllditayedde 171
                    + +++ ++G  +        ++  r +++gD   +p++ +   ++g  +d + ld t+++++ 
     CDO68372.1 467 EGKQTVNAGDSVYkspfvgsSKVFRYLHCGDFRACPQHvLHPAIKGkhVDHVYLDTTYLDPKP 529
                    888888888888877766555666799*********772446676677999999999999865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.8
                    EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEE CS
  Lactamase_B_2  56 kklplyapkgvlavleanfvylaleeepavnv 87 
                    k + ly+p+g++++l a+ v++ l+ + +++v
     CDO68372.1 942 KGVLLYGPPGTGKTLLARAVAATLNTN-FLKV 972
                    447799*******99999999888887.5555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   1.4e-08   7.2e-06       1     135 [.     943    1064 ..     943    1066 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.4e-08
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrll 95  
                  +vlL GppGtgK+ la+ +aa ln++++ v  ++      ++ ++   ++ ++ v   +   ar  e++++++DE++ +    +++  s   e ++ 
  CDO68372.1  943 GVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSA------IVDKYI--GESARVVREMFG-YARehEPCVIFMDEIDAIGGRRFSEGTSADREIQRT 1030
                  59*************************9998777......777777..333334444444.444589**********99999999999999999999 PP

                  ..-SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5   96 leeggelvkaknddllerfrviatanpldrslnelspalr 135 
                  l+e+ ++++      l r+ +i+++n++d     l+pal+
  CDO68372.1 1031 LMELLNQMDGFD--SLGRTKIIMATNRPD----TLDPALL 1064
                  999988887654..466699999999999....7888876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       6.4   3.3e+03      27      55 ..     586     614 ..     575     640 .. 0.66
   2 !   20.1   0.1   1.3e-06   0.00067      19      51 ..     936     968 ..     911     983 .. 0.82
   3 ?    4.0   0.0      0.12        60     122     162 ..     988    1035 ..     983    1044 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.4
      AAA_16  27 vllsGes.GvGKsslvrellralekdggif 55 
                 ++++G    +GK ++v+++++al ++ +++
  CDO68372.1 586 LIVVGRTySIGKERIVKAIAKALGTK-VYC 614
                 55555433789999999999999888.443 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.3e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd 51 
                 v    p  vll+G++G+GK+ l+r+++  l+++
  CDO68372.1 936 VGIKPPKGVLLYGPPGTGKTLLARAVAATLNTN 968
                 44455699*******************988877 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.12
      AAA_16  122 llkrllallsrderplvlvlDdlq........wadeaslqllaaLlrll 162 
                  ++++++ ++++ ++p v+++D+++           +a++++ ++L++ll
  CDO68372.1  988 VVREMFGYARE-HEPCVIFMDEIDaiggrrfsEGTSADREIQRTLMELL 1035
                  67888899999.888*********7777755533335555555555554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.4   2.8e+03      38      66 ..     588     617 ..     574     640 .. 0.65
   2 !   22.2   0.0   1.8e-07   9.1e-05      35      94 ..     943    1010 ..     935    1016 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.4
      RuvB_N  38 lyG.pPGlGkttlakiiakelgvklkitsg 66 
                 ++G    +Gk  + k iak lg+k+   s 
  CDO68372.1 588 VVGrTYSIGKERIVKAIAKALGTKVYCDSR 617
                 3442357999999999**999999877664 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.8e-07
      RuvB_N   35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvleka.gdlaalltnl....eekd..vlfideih 94  
                   vllyGpPG Gkt la+ +a+ l+++ lk+ s+ +++k  g+ a ++ ++    +e++  v+f+dei 
  CDO68372.1  943 GVLLYGPPGTGKTLLARAVAATLNTNfLKVVSSAIVDKYiGESARVVREMfgyaREHEpcVIFMDEID 1010
                  69**********************99458899999988536667676665333323324488888886 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.1e-07   0.00011       6     105 ..     944    1037 ..     939    1054 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.1e-07
                  EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHH CS
       AAA_2    6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqi 102 
                  +ll gp g+Gkt+la+a+a +l+     ++  +  s++    +     +r + +  gy +  e  ++++DEid i  ++ s+      ++qr L+ +
  CDO68372.1  944 VLLYGPPGTGKTLLARAVAATLNT----NFLKVVSSAIVD--KYIGESARVVREMFGYAREHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 1034
                  6899*******************5....566555555555..22222345555667899999999************755555555679*****999 PP

                  HH- CS
       AAA_2  103 leg 105 
                  l +
  CDO68372.1 1035 LNQ 1037
                  976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.3e-05     0.022       8      30 ..     944     966 ..     939     976 .. 0.87
   2 ?    0.5   0.0       1.3   6.8e+02      75     117 ..     985    1036 ..     967    1053 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G++GtGKT+l+r ++ +l+
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLN 966
                 689***************99984 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.3
      AAA_22   75 seellealeqalraravielliiDEaqhlr....s......eealeeLrslln 117 
                  s ++++ +  ++r++    ++  DE++ +     s       e+ ++L +lln
  CDO68372.1  985 SARVVREMFGYAREHEP-CVIFMDEIDAIGgrrfSegtsadREIQRTLMELLN 1036
                  55566666667777777.9*********9776551555667444444444444 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.6   1.6e-05    0.0082      16     104 ..     749     837 ..     735     842 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
     DUF3450  16 atldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllek 104
                 at++   +++++a+ ++aq+++  + +d+ +++ l+ yr+  ++ e ++   ++l+ +++++e+++++ e +i+ ++ + + +  ++++
  CDO68372.1 749 ATVNVGSETSRAATMSSAQASTSANTMDQRRKDALKGYREKMRQHETMSQNLKNLRFSLKDLEKDFEKTEDDIKAVQSVGQIIGEVMKQ 837
                 5566667888999999***************************************************************9999999987 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.3   6.6e+02      47      79 ..     580     613 ..     574     625 .. 0.79
   2 !   13.9   0.0   4.5e-05     0.023      51      89 ..     942     978 ..     933     993 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
       TIP49  47 klaGravLlaGps.gtGktalaiaiskelgedvp 79 
                   + r+++++G + + Gk  +  ai+k+lg++v 
  CDO68372.1 580 DASDRTLIVVGRTySIGKERIVKAIAKALGTKVY 613
                 5577899999986266**************9884 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 ++vLl Gp+gtGkt la a++  l+  + f ++++s + 
  CDO68372.1 942 KGVLLYGPPGTGKTLLARAVAATLN--TNFLKVVSSAIV 978
                 89**********************8..788888888775 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-05     0.011      52     115 ..     940    1008 ..     927    1019 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
      DUF815   52 pannvLLwGarGtGKSslvkallneyaeegLrlie..vekedlkelpklvellr...erperfilfvDD 115 
                  p + vLL+G  GtGK  l +a+ ++++++ L+++   +  + + e  ++v+++    +++e +++f+D 
  CDO68372.1  940 PPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSsaIVDKYIGESARVVREMFgyaREHEPCVIFMDE 1008
                  6678******************************64477788888888888875333666789999997 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.3   1.2e+03      27      47 ..     592     613 ..     569     618 .. 0.73
   2 !   13.8   0.0   8.2e-05     0.042      21      59 ..     943     981 ..     913     990 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.3
                 STTSSHHHHHHHHHHHTT--.- CS
        TsaE  27 dLGaGKTtlvrglakalgve.e 47 
                     GK  +v+++akalg +  
  CDO68372.1 592 TYSIGKERIVKAIAKALGTKvY 613
                 5678*************98754 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.2e-05
                 EEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59 
                  +lL+G+ G+GKT l+r++a++l+ +  +v S   ++v +Y
  CDO68372.1 943 GVLLYGPPGTGKTLLARAVAATLNTNflKVVSS--AIVDKY 981
                 49*********************9997876664..466666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       4.2   2.2e+03       2      30 ..     587     616 ..     586     630 .. 0.76
   2 !   14.2   0.0   8.4e-05     0.043       1      46 [.     944     980 ..     944    1012 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 4.2
  RNA_helicase   2 wlyGps.geGKStlakeLakallkklklkk 30 
                   +++G++  +GK +++k +akal +k+  ++
    CDO68372.1 587 IVVGRTySIGKERIVKAIAKALGTKVYCDS 616
                   688999999*************98874433 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8.4e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl....klkkkdsvysrnpeddfwdg 46 
                   ++lyGp+g+GK++la+ +a++l +++                  + ++d+
    CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLNTNFlkvvS-------------SAIVDK 980
                   689**************99988866633321.............333333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.6e-05     0.023       1      68 [.     944    1039 ..     944    1064 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.6e-05
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleens 68  
                  +ll G+pG+GKt la++++  l+                      +++   +a+e++++  + +e        ++e   +d++ +  l+++l++ +
  CDO68372.1  944 VLLYGPPGTGKTLLARAVAATLNTnflkvvssaivdkyigesarvVREMFGYAREHEPCVIFMDEidaiggrRFSEGTSADREIQRTLMELLNQMD 1039
                  799***************999844579888888888887777777677777777777776666667777777777777777777777777777765 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.3e-05     0.027      11      46 ..     840     875 ..     830     877 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.3e-05
  Prot_ATP_OB_N  11 qdgtadVlvggrrmrVavsPlvdaeeLrpGqeVlLn 46 
                    +++ +   ++g r++V+  P++++++L++G++V L+
     CDO68372.1 840 DERFIVKASSGPRYVVSYRPTLPVDKLKMGTRVSLD 875
                    5666667899***********************986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.2e-05     0.022      25      46 ..     944     965 ..     934     984 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.2e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsll 46 
                   +ll+GppG+GKt+la+++++ l
    CDO68372.1 944 VLLYGPPGTGKTLLARAVAATL 965
                   89**************998876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.3e-05     0.032      27     108 ..     935    1008 ..     928    1019 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.3e-05
       AAA_7   27 elllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDD 108 
                  +  +k  k vll+Gp GtGKt++++ +  +l+         nf +  s++ + + i ++    r+    +  ++ +v+F+D+
  CDO68372.1  935 RVGIKPPKGVLLYGPPGTGKTLLARAVAATLN--------TNFLKVVSSAIVDKYIGESARVVREMFGYAREHEPCVIFMDE 1008
                  556677789****************9999988........555566666666666665554444333334555556666665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.6e-05     0.044      48      78 ..     942     972 ..     932     982 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.6e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsv 78 
                 ++++l Gp+G+GK+ la a++    ++ l+v
  CDO68372.1 942 KGVLLYGPPGTGKTLLARAVAATLNTNFLKV 972
                 6899***************998876666665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.9   9.8e+02      81     122 ..     764     804 ..     755     810 .. 0.74
   2 ?   11.7   0.0    0.0003      0.15       5      29 ..     944     967 ..     941    1013 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
      AAA_24  81 claevirqnekaeskedkgdgkGygelaeefrrllkklqelr 122
                  +a++ + ++ +++   k ++kGy e  +++  + ++l++lr
  CDO68372.1 764 SSAQASTSANTMDQ-RRKDALKGYREKMRQHETMSQNLKNLR 804
                 44555555555333.4677899***************99998 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0003
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfi 29 
                 +l+yGp+g+GKT la+     +l  
  CDO68372.1 944 VLLYGPPGTGKTLLARAV-AATLNT 967
                 89*************998.555544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00013     0.065       2      33 ..     944     988 ..     944    1063 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00013
      AAA_33   2 vllvGlpGsGKstlaerllkklg...avllssdt..........l 33 
                 vll G+pG+GK+ la+ +++ l      ++ss +          +
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLNtnfLKVVSSAIvdkyigesarV 988
                 7899**************999995544444444455566666664 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00025      0.13       2      30 ..     944     972 ..     943     982 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00025
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG++ktll++a+a +l+++f ++
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLNTNFLKV 972
                 7999*********************9887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1      0.01       5.1     145     194 ..     773     823 ..     741     827 .. 0.81
   2 ?    4.3   0.0       0.1        51      22      43 ..     944     965 ..     921    1029 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.01
      AAA_23 145 efelkdkkerleelekeleeledekkllekl.eqekekekeleeleeelee 194
                 +  ++++k++l+ +++++++ e++ + l++l   +k+ ek +e+ e++++ 
  CDO68372.1 773 NTMDQRRKDALKGYREKMRQHETMSQNLKNLrFSLKDLEKDFEKTEDDIKA 823
                 344578899********************9976889999999999999886 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.1
      AAA_23  22 tlItGpNGaGKTTildAiklaL 43 
                 +l++Gp G+GKT + +A+   L
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATL 965
                 599**************99888 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       3.6   1.8e+03       9      44 ..     570     606 ..     564     621 .. 0.79
   2 ?   10.9   0.0   0.00053      0.27      23      63 ..     942     979 ..     934    1012 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.6
                      HHHHHHHHHHCTSSS-EEEECST.TSSHHHHHHHHHH CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGes.GtGKellaraihe 44 
                      ++  e++k+  ++d +++++G +   GKe + +ai +
       CDO68372.1 570 EKGKEKAKASDASDRTLIVVGRTySIGKERIVKAIAK 606
                      55667888888899999999*98457****9999976 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00053
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-T CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipe 63 
                        vl+ G  GtGK+llara+ ++ +   ++f++v  +ai +
       CDO68372.1 942 KGVLLYGPPGTGKTLLARAVAATLN---TNFLKVVSSAIVD 979
                      679****************987766...4455554444433 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00032      0.16       5      76 ..     944    1012 ..     941    1043 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00032
      AAA_14    5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76  
                  +++ G+  +GKT l++ ++ +l     ++l +      dk + +++++ ++++  ++e++  ++f+DEi  +
  CDO68372.1  944 VLLYGPPGTGKTLLARAVAATLN---TNFLKVVSSAIVDKYIGESARVVREMFGYAREHEPCVIFMDEIDAI 1012
                  7899***************9988...8888888888777776666545555555444568899******987 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.9      0.31   1.6e+02     118     173 ..     768     820 ..     740     846 .. 0.43
   2 ?    9.0   0.0    0.0021       1.1      20      42 ..     944     966 ..     934    1001 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.31
      AAA_11 118 ekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkke 173
                 ++ + +++ ++ +++l+ +++++r+ e  ++    +k+ ++s ++le++ +k ++ 
  CDO68372.1 768 ASTSANTMDQRRKDALKGYREKMRQHETMSQ---NLKNLRFSLKDLEKDFEKTEDD 820
                 1111233444444444444444433333322...2222222222222222222222 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0021
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                 +l+ GPPGtgKT    ++ + l+
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLN 966
                 799*********87777777775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00035      0.18       2      28 ..     944     971 ..     943    1000 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00035
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvp 28 
                 + + G+++tGKT l++a aa+ +++ ++
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATlNTNFLK 971
                 6799***************987665444 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00049      0.25      38      61 ..     378     401 ..     369     499 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00049
                  HTSGGGGEEEEE-SBSSHHHHTTG CS
  Lactamase_B  38 lglkpkdvdavilTHlHlDHiGgl 61 
                  ++  + +v+a +lTH+H+DH+ +l
   CDO68372.1 378 RYGAIPNVTAYFLTHAHSDHYTNL 401
                  66778899999*********9765 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   0.00026      0.13     179     243 ..     760     825 ..     753     829 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
                 HHHHHHH-GG.GHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         HBM 179 ldqlrqalasdpraalqq.lesalskYRaaleqfkaavaaieqarkemteqgdeivkisdeLyqiq 243
                 ++++ +a+as++++ ++q  ++al++YR+ ++q+++  ++ +++r ++++  ++  k  d++ + q
  CDO68372.1 760 AATMSSAQASTSANTMDQrRKDALKGYREKMRQHETMSQNLKNLRFSLKDLEKDFEKTEDDIKAVQ 825
                 5567788888888888661579*********************************99999998887 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00028      0.14      22      45 ..     944     967 ..     936     985 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00028
                 EEEE--TTSSTTHHHHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalavealk 45 
                 v   Gp GtGKt+la a+a+++ +
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLNT 967
                 6789***********999987654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00059       0.3      21      53 ..     944     976 ..     935     997 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00059
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglA 53 
                 ++l Gp+GtGKt + +a++++++++  +v+  A
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLNTNFLKVVSSA 976
                 5789****************9999988887766 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.6   0.00061      0.31      55     112 ..     773     830 ..     764     837 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00061
     DUF4200  55 kendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeykkYeef 112
                 +  d++r++alk + e+ ++++ + + +k+l+ ++++l+++ ek+e+ ++ +++  + 
  CDO68372.1 773 NTMDQRRKDALKGYREKMRQHETMSQNLKNLRFSLKDLEKDFEKTEDDIKAVQSVGQI 830
                 5679*********************************************999876665 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         3   1.6e+03     124     139 ..     594     609 ..     584     611 .. 0.84
   2 ?    9.4   0.0   0.00098       0.5     117     139 ..     944     966 ..     938     973 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3
   Parvo_NS1 124 ntGktnlaeaIakavp 139
                 ++Gk+ + +aIaka+ 
  CDO68372.1 594 SIGKERIVKAIAKALG 609
                 79***********985 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00098
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavp 139
                 v++yGp+ tGkt la+a a ++ 
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATLN 966
                 89***************998875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.6   3.4e+03      88     146 ..     777     830 ..     754     831 .. 0.66
   2 ?    9.9   0.1   0.00099      0.51      36      57 ..     944     965 ..     937     975 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.6
      AAA_25  88 rRlravgealrddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlv 146
                 +R + +++ +r++ r        + +s +L  +++  + l+ d+++ e++i++v  v+ +
  CDO68372.1 777 QRRKDALKGYREKMRQ------HEtMSQNLKNLRFSLKDLEKDFEKTEDDIKAVQSVGQI 830
                 4444555555332222......22245667677777777999999999999998877665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00099
      AAA_25  36 allaGapgtGKttlaldlalav 57 
                 +ll+G+pgtGKt la  +a+++
  CDO68372.1 944 VLLYGPPGTGKTLLARAVAATL 965
                 69*************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.49
# Mc/sec: 7106.31
//
Query:       CDO68373.1  [L=921]
Description: hypothetical protein BN946_scf184815.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-16   59.2   0.2    7.9e-16   58.3   0.2    1.5  1  DUF659         Protein of unknown function (DUF 659)
    5.9e-05   22.8   0.9     0.0014   18.4   0.0    2.9  2  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.2   8.8e-20   7.9e-16       1     150 [.     283     433 ..     283     441 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.8e-20
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkviee.vgaen..Vvq 96 
                 Ps++ L++++L+ee +++   ++e++++++++  +  +Dgw++ ++ s++  +++ +  +  l+ +d+s   kta++l++l+ + ++  +       v 
  CDO68373.1 283 PSRKVLSERVLDEEARRV---TEEMRAEVRAKYATGQCDGWKNVNRDSIVASTINAQYTPWLLNLFDVSAVAKTAQNLFQLIVEEVQYcIEHLSvtLVA 378
                 99****************...666778*************************************************99999998887644444444567 PP

      DUF659  97 vitdnasnykkagklleekyptifwtpcaahclnlmledilk.lkwvkevlekak 150
                  +td+a + k+   +l +++p ++ + c ah++nl++ d +k +++ ++ +++a+
  CDO68373.1 379 YCTDAAGDTKAMRDRLCQRFPWLITIDCWAHQINLLVVDYFKhMRHYSTFMDEAE 433
                 7**************************************9998777777776665 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.029   2.6e+02      29      60 ..     136     167 ..     126     175 .. 0.80
   2 !   18.4   0.0   1.6e-07    0.0014      19      84 ..     687     756 ..     666     758 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.029
                    TTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHT CS
  Dimer_Tnp_hAT  29 nsskyPnlsklardvLsipvssaasErsFstl 60 
                     +s+ P+  +   +  s+  ss +sE sFst+
     CDO68373.1 136 QHSRGPLAARSTAITPSQSLSSLSSEPSFSTS 167
                    56777777777777788999**********98 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.6e-07
                    .--HHHHHHHTTTTSHH....HHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHH CS
  Dimer_Tnp_hAT  19 efdvlewwkensskyPn....lsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieq 84 
                    ++d++  w+  ++  P        +a ++Lsi   + a+Er Fs++g ++++ rn+l+ + v + + i++
     CDO68373.1 687 DVDIVRIWRSFETVNPRggeaFASFAARLLSIVPNTGATERDFSKMGTIHTKTRNRLKAERVRKTVLIRN 756
                    566666666444443322222678999***********************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 6065.88
//
Query:       CDO68374.1  [L=262]
Description: hypothetical protein BN946_scf184815.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-36  122.7   0.2    9.3e-36  121.6   0.2    1.6  1  Ribosomal_S4e  Ribosomal family S4e
    3.1e-26   90.8   0.2    6.8e-26   89.7   0.2    1.6  1  40S_S4_C       40S ribosomal protein S4 C-terminus
    3.1e-21   75.2   5.8    7.9e-21   73.9   5.8    1.7  2  RS4NT          RS4NT (NUC023) domain
    5.4e-08   32.4   0.3    1.5e-07   31.0   0.0    1.9  3  S4             S4 domain
    0.00033   20.5   2.5     0.0011   18.9   2.5    2.0  1  KOW            KOW motif
  ------ inclusion threshold ------
      0.071   12.9   0.2       0.13   12.1   0.2    1.3  1  ComC           COMC family
       0.12   11.8   0.0       0.16   11.4   0.0    1.3  1  Sipho_tail     Phage tail protein


Domain annotation for each model (and alignments):
>> Ribosomal_S4e  Ribosomal family S4e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.2   3.6e-39   9.3e-36       2      75 .]      96     169 ..      95     169 .. 0.99

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 3.6e-39
                    TEEEEEEE-TTSSEEEEEE-TTCCCEEEEEECEEEEECCCEEEEEETTS-EEEESSTT-STTEEEEEETTTTEE CS
  Ribosomal_S4e   2 genyrllydtkgrfalhkItseeakyKLcKikkkttvkkgipqlvthdGrtirypdpdikvnDtvkidleenkI 75 
                    +e++rllyd+kgrf++h+I++eea+yKL+K++k+ +++kg+p++vthdGrtirypdp+ikvnDtv +d+e++kI
     CDO68374.1  96 DEHFRLLYDVKGRFTIHRISPEEATYKLLKVRKMAIGNKGVPYIVTHDGRTIRYPDPLIKVNDTVRFDIEQGKI 169
                    8************************************************************************9 PP

>> 40S_S4_C  40S ribosomal protein S4 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.2   2.7e-29   6.8e-26       1      47 [.     212     258 ..     212     259 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 2.7e-29
                 -SSS-EEEEEGGGEEE--STTS-SS---SS-S----HHHHHHHHHHH CS
    40S_S4_C   1 DaaGntFATRlsNvFvIGkgnkpwvsLPkgkGiklsiaeerdkrlak 47 
                 D++++tFATR+sN+FvIG+g+k+wvsLPkgkGikl+iaeerd r+++
  CDO68374.1 212 DSLERTFATRISNIFVIGEGTKSWVSLPKGKGIKLTIAEERDVRRRR 258
                 99******************************************986 PP

>> RS4NT  RS4NT (NUC023) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   5.8   3.1e-24   7.9e-21       1      37 []       3      39 ..       3      39 .. 0.98
   2 ?   -3.4   0.0       4.5   1.2e+04      22      29 ..     215     222 ..     214     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 3.1e-24
                -S----EETTTS-TTS---SSSSSEE----SSSS-TT CS
       RS4NT  1 rGpkkHLKrlaAPkhWpldkkegvfavkPspGPHklr 37
                rGpkkHLKrlaAP++W+ldk++g++a++PspGPHklr
  CDO68374.1  3 RGPKKHLKRLAAPSSWMLDKLSGTYAPRPSPGPHKLR 39
                8**********************************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.5
                 SSSEE--- CS
       RS4NT  22 egvfavkP 29 
                 e++fa++ 
  CDO68374.1 215 ERTFATRI 222
                 799**985 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.9e-11   1.5e-07       3      48 .]      44      90 ..      42      90 .. 0.94
   2 ?   -2.9   0.0       2.3   5.9e+03      31      48 .]     143     160 ..     140     160 .. 0.70
   3 ?   -3.3   0.0         3   7.7e+03      23      29 ..     164     170 ..     163     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.9e-11
                HHHHH.HHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  3 Ldkvl.arlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                L ++l  rl++a   re+  ++ ++ ++V+Gkv++dp y+ +++Dvi
  CDO68374.1 44 LTIFLrNRLKYALNGREVTAIVAQRLIKVDGKVRTDPTYPAGFMDVI 90
                6678889**************************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 TTEEE--TT-EE-TTCEE CS
          S4  31 NGkvvkdpsyrVkpgDvi 48 
                 +G+ ++ p   +k++D++
  CDO68374.1 143 DGRTIRYPDPLIKVNDTV 160
                 777777777777777765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3
                 HHTTTEE CS
          S4  23 IehGrVl 29 
                 Ie+G+++
  CDO68374.1 164 IEQGKIT 170
                 99**985 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.5   4.2e-07    0.0011       2      32 .]     178     211 ..     177     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.2e-07
                 TSEEEESSSTTTTCEEEEEEEETTT...TEEEEE CS
         KOW   2 GdhVkVvsGphkGktGkVvkvdqhk...vrVfvd 32 
                 G+   +++G+++G+ G++v++++h+   ++V+v+
  CDO68374.1 178 GNLAFITGGRNRGRCGVIVHREKHVggfDIVHVK 211
                 9999***************************996 PP

>> ComC  COMC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     5e-05      0.13       6      25 ..     168     187 ..     165     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                 XXXXXXXXXXXXXXXXXXX- CS
        ComC   6 klnqFeeLktkeLeqIkGGs 25 
                 k+++F+  +t  L+ I+GG 
  CDO68374.1 168 KITDFVKFDTGNLAFITGGR 187
                 89*****************5 PP

>> Sipho_tail  Phage tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.2e-05      0.16     160     207 ..     126     171 ..      41     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.2e-05
  Sipho_tail 160 ieitlngengylgiinnkttgeylkvggpefkaGDvieidvenrkvlv 207
                 ++  ++g+ g + i++  ++g+++++ +p +k +D++ +d e +k++ 
  CDO68374.1 126 VRKMAIGNKGVPYIVT--HDGRTIRYPDPLIKVNDTVRFDIEQGKITD 171
                 45578999999***99..*************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1814.30
//
Query:       CDO68375.1  [L=951]
Description: hypothetical protein BN946_scf184815.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-81  272.7   6.2    6.4e-81  272.0   6.2    1.4  1  GCFC       GC-rich sequence DNA-binding factor-like protein
      2e-14   53.8   9.3      2e-14   53.8   9.3    3.2  3  TIP_N      Tuftelin interacting protein N terminal
    2.5e-12   46.5   2.9    2.5e-12   46.5   2.9    2.3  2  G-patch    G-patch domain
    3.8e-09   36.5   5.2    4.7e-07   29.8   1.2    2.9  2  G-patch_2  G-patch domain


Domain annotation for each model (and alignments):
>> GCFC  GC-rich sequence DNA-binding factor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.0   6.2   1.4e-84   6.4e-81       1     277 []     491     778 ..     491     778 .. 0.99

  Alignments for each domain:
  == domain 1  score: 272.0 bits;  conditional E-value: 1.4e-84
        GCFC   1 leeiaekFeelkekyleeykeaelselavslvaPllrealleWePLkdptalvdnlkswrklLe.................eevkekekkrkesttpye 82 
                 l++  ++F +l  +y +e+++++l+e++v+++aP++r++l +W+PL+dpta+ +n++ wr  L+                 ++v ++ + +++ +tpye
  CDO68375.1 491 LDPFNASFDKLLGQYAKEFDRYRLDEVVVAAIAPVVRRMLATWRPLEDPTAFTANFRAWRRALKmaapeekpqlqvqvygsSTVISNVTVEEKPMTPYE 589
                 678899**************************************************************************9999999************ PP

        GCFC  83 tllwelwlpsvrssvanewdprdpdpmlalleaWkplLPefvldnlleqlilpkLeaaveeWdPlskkqttrlvpihswifpwlpllgeerlepglvsd 181
                 +llw++wlp+vrs+++new p dp p+++l eaW+p LP+f++dn+++ql+lpk+++av  W+P+++k+     ++ + +fpwlp++g  rle+ ++ d
  CDO68375.1 590 SLLWNTWLPRVRSALNNEWAPEDPLPAVRLYEAWAPFLPPFIRDNFFDQLVLPKVHKAVGDWNPRKSKV-----SLQKLVFPWLPHVG-LRLED-VLGD 681
                 ****************************************************************99998.....999***********.****8.**** PP

        GCFC 182 irrklrqaLdaWdpsrsalaiLkpWkdvfspaewdklllrhilpklaralq.efeinpkqqslellenvlkWkdllspsvlaeLlekeffpkwlqvl 277
                 +rrk +++L+aW++s+  ++ L  W++vf+ +ewd++ll++++pkl++ l+ +f++np+qq++++l+ v++W++ll+ps+l+++le effpkwl+vl
  CDO68375.1 682 ARRKVKSVLRAWSVSDAIPEDLGAWREVFDVGEWDTMLLKYVVPKLGSRLRdDFRVNPRQQDMQPLQDVMSWEQLLRPSILSQILETEFFPKWLDVL 778
                 **********************************************************************************************997 PP

>> TIP_N  Tuftelin interacting protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   9.3   4.6e-18     2e-14       6      99 ..      26     118 ..      19     123 .. 0.73
   2 ?    1.2   0.1      0.11   4.7e+02      43      77 ..     141     191 ..     134     206 .. 0.62
   3 ?   -0.7   1.3      0.41   1.9e+03      42      59 ..     318     335 ..     299     362 .. 0.63

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 4.6e-18
       TIP_N   6 rfei.tdyd.....ldnefnykrrr.rrqtKeeaiYGvFaedDsddeeeerrskkrsrrgkkdytkpvnFvsggikkeakedkekddkkdeeeeeeeee 97 
                 +f+  +d+d     + +e++ykr+r r+++Ke+aiYG+F++ D++de+ +r + k+    +   tk+++Fvs+g k + +ed  ++d + +eeee + +
  CDO68375.1  26 DFDDnNDPDaraerELFENPYKRKRrRKNGKEDAIYGIFGS-DDEDESPQRLRGKS----R---TKAPSFVSSGAKVALDEDVPMEDRNASEEEEASAD 116
                 5555588889999999*********777************6.66665555555433....2...5699**********999988887655555544333 PP

       TIP_N  98 de 99 
                 d+
  CDO68375.1 117 DA 118
                 33 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
       TIP_N  43 ddeeeerrskkrsrrgk................kdytkpvnFvsggikkea 77 
                 ++eeee+++++++++g                  + t++ +F  ggi ++ 
  CDO68375.1 141 EEEEEEEEEARPRFGGLglgankggigsskagiGNTTAATSFQRGGIGSSR 191
                 333344444444444334444455567777777899999999999987664 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.41
       TIP_N  42 sddeeeerrskkrsrrgk 59 
                 sddeee+r  +++ r+g 
  CDO68375.1 318 SDDEEESRAAARKARKGA 335
                 455555555555533332 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   2.7       1.8   7.9e+03      17      29 ..     156     168 ..     155     177 .. 0.75
   2 !   46.5   2.9   5.5e-16   2.5e-12       3      42 ..     255     294 ..     253     297 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
     G-patch  17 GqGLGkkeqGiae 29 
                 G GLG ++ Gi +
  CDO68375.1 156 GLGLGANKGGIGS 168
                 5588888888764 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 5.5e-16
     G-patch   3 niGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGl 42 
                  +G+kmL+kmGW  G+GLG  ++Gi++P+e k ++++ Gl
  CDO68375.1 255 TFGAKMLEKMGWQAGMGLGTTGEGIVTPVESKLRPKGMGL 294
                 68***********************************998 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.2    0.0011       5.1      36      59 ..     140     163 ..     126     164 .. 0.75
   2 !   29.8   1.2     1e-10   4.7e-07      16      55 ..     255     294 ..     249     299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
   G-patch_2  36 nkkgrvkpeepkrRpgrlGLGakp 59 
                 +++++ ++ee ++R g+lGLGa++
  CDO68375.1 140 EEEEEEEEEEARPRFGGLGLGANK 163
                 44455678888899999****975 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 1e-10
   G-patch_2  16 eFGaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGL 55 
                  FGa +L  MGW++g g g++++g v+p+e k Rp+++GL
  CDO68375.1 255 TFGAKMLEKMGWQAGMGLGTTGEGIVTPVESKLRPKGMGL 294
                 6**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 5945.00
//
Query:       CDO68376.1  [L=1904]
Description: hypothetical protein BN946_scf184815.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-78  263.0   0.0    5.4e-78  262.6   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
      0.094   12.7   2.0       0.62   10.1   2.0    2.5  1  UIM       Ubiquitin interaction motif
       0.13   12.4   3.3          2    8.6   0.0    4.2  5  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.6   0.0   9.1e-82   5.4e-78       2     307 .]    1564    1904 .]    1563    1904 .] 0.91

  Alignments for each domain:
  == domain 1  score: 262.6 bits;  conditional E-value: 9.1e-82
                  HHHHHHT-GGGSSE........EESSTTSSSEEE-TTHHHHS........................HHHHHHHHHHHHHTT--BSS-B-HHHHHHHT CS
                  xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT    2 llskelldpklglf........eeesedsgtlypkpssseee....................llklfeflGkvlGkaiyeeilldlpfsraflkfll 70  
                  l+ske+ +++l+++                       ++                       + ++ +++G++++ka+++++++dl+f+++flk++l
  CDO68376.1 1564 LVSKEFARRDLKIWrdadptapG-----------AYVHH--PlglfpapispeeiakdggqkRTHIIRVIGQFVAKAMLDSRIIDLSFNKVFLKLVL 1647
                  67888888888888433333321...........22211..1123345555556788999997799******************************* PP

                  T.-.---TCHHHHH-HHHHHHHHHHH..HS-GGG......................GT-BSEEEEETTEEEEEESSTTGGGSB--TTTHHHHHHHHH CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   71 g.eekitledleeidpelakslkellslesntee...................vedlaLtFtipenagasatieLipnGanipVtnenkkeYiklyv 147 
                  g e+++tle l+ +dpela sl ++++l + +++                   +edl+L+Ft+p   g++  ieL p+G++ipVt +n++eYi+++v
  CDO68376.1 1648 GeEVPLTLESLKRVDPELAASLLKIQNLAAASKKqdeklrrklaaiedmggvsIEDLGLDFTVP---GYD--IELRPGGRDIPVTADNVDEYIQEVV 1739
                  *889**********************99888877899***************************...999..************************* PP

                  HHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS..--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  148 nyllkksvekqleaflkGfsevipskalklfdaeelellisGede.lidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssr 243 
                  ++ + k+ ++q +af++Gfs+v+p   l++f+++el +l+ G++e +++ve+l++ +++++g+n es+ i+ l+ei++e++   +r+ LqF+Tgs++
  CDO68376.1 1740 DAIIGKGAQTQAQAFREGFSKVFPIGDLQAFTSDELAMLF-GNAEeDWSVETLSEALKADHGFNVESRAIRDLIEIMSEYDGPTRRSYLQFITGSPK 1835
                  *************************************999.55544*************************************************** PP

                  --TTCGGG-B--EEEEE-S......-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHH.H--XXX CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        HECT  244 lPlgGfaelhpkftierksk....edetrLPtahTCfnlLklpdYsskeilkekLltAieet.egFels 307 
                  lP+gGf+ l+p++t++rk +    + +++LP+++TC+n+Lklp+Yssk+++kekL +A++e+  +F+ls
  CDO68376.1 1836 LPIGGFKGLNPPLTVVRKPHeaplTADDYLPSVMTCVNYLKLPEYSSKAVMKEKLSVAMREGvGSFHLS 1904
                  ******************99999999************************************999*996 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.0    0.0001      0.62       1      13 [.     347     359 ..     347     360 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
         UIM   1 dEdedLqrAlalS 13 
                 dEd+ L++Ala+S
  CDO68376.1 347 DEDAALAAALAMS 359
                 8***********9 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.26   1.6e+03      25      39 ..     370     384 ..     367     386 .. 0.80
   2 ?   -2.9   0.0       1.3   7.9e+03      11      18 ..     398     405 ..     393     406 .. 0.81
   3 ?    8.6   0.0   0.00034         2       2      41 .]     429     468 ..     428     468 .. 0.92
   4 ?    0.6   0.0      0.11   6.7e+02       2      22 ..     564     584 ..     563     594 .. 0.82
   5 ?   -3.2   0.0       1.8   1.1e+04       8      20 ..     983     995 ..     982    1000 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.26
                 SHHHHHHHHHHHHHH CS
         Arm  25 deevqeeAawALsNL 39 
                 + e q  A+++L+NL
  CDO68376.1 370 NLEAQVLACRCLANL 384
                 6667777*******9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
                 TTHHHHHH CS
         Arm  11 aGavppLv 18 
                 +Ga+p+L+
  CDO68376.1 398 HGAIPVLC 405
                 8******9 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00034
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +e+   +++ G++ +L++ L+  +  vq+ A+ A +N ++
  CDO68376.1 429 EEFPSSIVREGGLAALLNYLDFFSIAVQRTALQAAANCCR 468
                 5677889*****************************9997 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.11
                 HHHHHHHHHTTHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs 22 
                 ++ + ++ eaG+v+ L + L+
  CDO68376.1 564 PKITLVLLEAGIVDTLYQILT 584
                 55667889********99987 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 1.8
                 HHHTTHHHHHHHH CS
         Arm   8 vieaGavppLvrL 20 
                 + ++G+++ L+r+
  CDO68376.1 983 LLQSGVIDGLLRF 995
                 689*****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1904 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1364  (0.0760779); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.34u 0.34s 00:00:01.68 Elapsed: 00:00:00.50
# Mc/sec: 11535.52
//
Query:       CDO68377.1  [L=605]
Description: hypothetical protein BN946_scf184815.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-88  294.8   0.0    1.4e-87  294.2   0.0    1.3  1  FAD_binding_3   FAD binding domain
    2.7e-35  121.9   0.1    4.4e-35  121.2   0.1    1.3  1  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    4.4e-06   25.7   1.2    6.5e-06   25.1   1.2    1.2  1  HI0933_like     HI0933-like protein
      2e-05   24.0   0.6    0.00016   21.0   0.5    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.3e-05   23.4   0.1    0.00015   21.9   0.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00012   21.3   2.9     0.0002   20.6   2.3    1.6  2  FAD_binding_2   FAD binding domain
    0.00013   22.4   0.3      0.012   16.2   0.2    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00025   20.4   0.2     0.0005   19.4   0.2    1.4  1  Thi4            Thi4 family
    0.00067   19.0   1.0      0.001   18.4   1.0    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0012   18.3   0.7     0.0019   17.6   0.7    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
     0.0022   17.7   0.1     0.0042   16.7   0.1    1.5  1  DAO             FAD dependent oxidoreductase
     0.0022   17.2   0.8     0.0037   16.4   0.8    1.3  1  GIDA            Glucose inhibited division protein A
     0.0023   17.3   0.3     0.0039   16.5   0.3    1.2  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0029   16.7   1.0       0.02   14.0   1.6    1.9  2  Lycopene_cycl   Lycopene cyclase protein
     0.0043   16.0   0.1     0.0072   15.2   0.1    1.3  1  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.028   14.7   0.0    1.5  1  TrkA_N          TrkA-N domain
      0.033   14.1   0.2      0.057   13.3   0.2    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.037   13.7   0.1      0.075   12.7   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.043   14.3   0.0      0.092   13.2   0.0    1.6  1  XdhC_C          XdhC Rossmann domain
      0.067   12.5   0.2       0.11   11.8   0.2    1.2  1  ThiF            ThiF family
      0.082   12.5   0.2       0.14   11.7   0.2    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.11   12.5   0.0       0.22   11.6   0.0    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.16   11.9   0.2       0.33   10.9   0.2    1.5  1  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.2   0.0   1.8e-90   1.4e-87       1     349 []      12     376 ..      12     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 294.2 bits;  conditional E-value: 1.8e-90
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.....CCCCCEEEEEHH CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne.....lsdtpkaradle 91 
                    ++dVlI+GaGpaG+m a+ L++aGv+v+++++r  +v  ++adg+++rt+e+l++ Gl +r+l+e+  n++   a+yn+     +++t++a+    
     CDO68377.1  12 KVDVLIIGAGPAGVMCANALAMAGVNVRIIDQRPVKVAAGQADGIQPRTIEVLQSYGLGERLLREA--NQMHMAAFYNPspsggIERTSRAPDVTA 105
                    58****************************************************************..7777788899888888888877777777 PP

                    CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEE.....EECCEECCCCCCCEEE..ECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEE CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerglqvrfkte.....vesleqdeegvtaevr..dketgeeetvrakYlvGaDGgrStvrktlgiefegee 180
                      ++++   ++ q  +e i +++ e++g++v++        +   e++ + vt + +   + +g  e v+ak++ GaDG++S+vrk+lgi++ ge+
     CDO68377.1 106 PSARYPFEVTLHQGAIEAIFLDSMEAHGVSVERPIVptsieLSQSEEELKDVTLKHLnpAEHQGDSEIVKAKFVLGADGAHSWVRKSLGISMDGEQ 201
                    679999999**********************986541111155555555555555557767788889***************************** PP

                    EEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS.....CCCHHHHHHHHHHHHHHTTSSCEE..EEEEEE CS
  FAD_binding_3 181 tvyeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer.....sekfteeevkarlreivgektldv..eieevs 269
                    t+y++gv+d+++d+d++di+ + ++++s++ +  m+iP+e  l+r y+q++ r+ ++       + k+ ++++ a +++++++ ++ +  +i++ +
     CDO68377.1 202 TDYIWGVVDMVPDTDFPDIRCK-CAVHSNNGSC-MIIPRECDLVRLYIQLSDRDVVDPAtgrvdKSKMGPDKLLAVAQKSFKPFEISTssPIDWWT 295
                    *********************9.***9999886.****************9998777664446678888999999*******9998887789**** PP

                    EEEEEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 270 awtvaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdfa 349
                     + ++qrva+k++ + rvf+aGDA+H+h+P++GqG+N +++D++nLawkLa+vl+G+ + +lL+tYe err+ aq+++df+
     CDO68377.1 296 LYIIGQRVASKFSVNeRVFIAGDACHTHSPKAGQGMNASMNDTHNLAWKLAHVLRGWSDLSLLKTYEFERRKYAQDLIDFD 376
                    *************999**************************************************************985 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.1   5.6e-38   4.4e-35       1     166 []     411     570 ..     411     570 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 5.6e-38
  Phe_hydrox_dim   1 FtsGvgveYqpsllvaevkskqnlatglrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeqksrlsaladalsskesflsrf 95 
                     FtsG+gv+Y+ps+++  ++++q++a++l +G+r+ ++  vr aDa+p+d+qd +psd rf++lvf+g+++d++q++r+++lad++ ++esf++++
      CDO68377.1 411 FTSGIGVHYEPSAIT--HNQHQSCASKLIVGERMVPHVFVRAADARPYDIQDVLPSDTRFKVLVFVGNIADSSQADRVRTLADEIGRPESFYHKY 503
                     9*************6..67******************************************************************9899****** PP

  Phe_hydrox_dim  96 tpadadvdsvievllihaaprkeieledlPevlrpfdeklgldyekvyvddes.yhe.dgaaYekyGidkkrG 166
                      +  + +++v++vl i +a++++++ +    + +      + +++kv +dd++ y + +g  Ye+yGid +rG
      CDO68377.1 504 GH--EAPSKVFDVLSIASAKKQDVDYTGATYAAQ----APEQHWSKVLLDDTDmYARvGGGGYERYGIDAQRG 570
                     76..589********************8777776....334488*********87776688********9988 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   1.2   8.4e-09   6.5e-06       2      32 ..      14      44 ..      13      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 8.4e-09
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv++iG+G+AG+m+A ++a +g +V ++++ 
   CDO68377.1 14 DVLIIGAGPAGVMCANALAMAGVNVRIIDQR 44
                 89***************************86 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.5     2e-07   0.00016       2      32 ..      14      44 ..      13      66 .. 0.88
   2 ?    0.2   0.0      0.44   3.4e+02     182     236 ..     118     184 ..     108     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvele 32
                 dv++iG+GpAG+ +a  la ag++v +++++
   CDO68377.1 14 DVLIIGAGPAGVMCANALAMAGVNVRIIDQR 44
                 89**************************643 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.44
                  -HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.....EEEEEETTSCE.......EEESEEEE-S- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.......xxxxxxxxxxx RF
  Pyr_redox_2 182 dkelsaaleealekeGvevklgtsvkeidgnge.....klevvledgee.......idadlvvvavG 236
                  + +++a+  + +e++Gv v    +++ i+  ++     ++++++ +  e       ++a+ v+ a G
   CDO68377.1 118 QGAIEAIFLDSMEAHGVSVERPIVPTSIELSQSeeelkDVTLKHLNPAEhqgdseiVKAKFVLGADG 184
                  56789999999******99999999877766655545422222222222233334466666655555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     2e-07   0.00015       1      29 [.      17      45 ..      17      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I+GaG +G  +A +La ag++v ++++r+
     CDO68377.1 17 IIGAGPAGVMCANALAMAGVNVRIIDQRP 45
                   9**************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.3   2.6e-07    0.0002       1      33 [.      14      46 ..      14      56 .. 0.90
   2 ?   -2.5   0.0       2.5     2e+03     110     203 ..      85     186 ..      58     194 .. 0.48

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.6e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   Dv++iG+G AG ++A ++a aG +v ++++ ++
     CDO68377.1 14 DVLIIGAGPAGVMCANALAMAGVNVRIIDQRPV 46
                   9*****************************997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
                    SB-EEE-TT-SST....EEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT..EEEEEEEEET...TTTCEEEEEESEE CS
  FAD_binding_2 110 pvdvrelGglsat....artlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLivedg..rvtGavvenp...esgrevrirakav 195
                     ++ ++ Gg  +t      t++  a++++ +tl++  a+ a +++s++++gv +   +  +++   +   +   ++++ +   e +++ +i+  + 
     CDO68377.1  85 FYNPSPSGGIERTsrapDVTAP-SARYPFeVTLHQ-GAIEAIFLDSMEAHGVSVERPIVPTSIELSQSeeELKDVTLKHLnpaEHQGDSEIVKAKF 178
                    5566666666666343322333.444445333333.367777777777777555544444444332222233333333333335555556655555 PP

                    EE-----G CS
  FAD_binding_2 196 vlatgGfg 203
                    vl + G++
     CDO68377.1 179 VLGADGAH 186
                    55555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   1.5e-05     0.012       2      32 ..      15      45 ..      14      54 .. 0.93
   2 ?    3.8   0.0      0.11        85      41      79 ..     120     160 ..     116     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                v+++G+G  g+++A+ala  g +V +++ ++
  CDO68377.1 15 VLIIGAGPAGVMCANALAMAGVNVRIIDQRP 45
                89*************************9886 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTS..EEEEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedg..vesvklk 79 
                 ++++i+ +++e++g+ v    ++++ie s+++  ++ v+lk
  CDO68377.1 120 AIEAIFLDSMEAHGVSVERPIVPTSIELSQSEeeLKDVTLK 160
                 578999*********************54443247778775 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   6.4e-07    0.0005      13      50 ..       8      44 ..       3      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.4e-07
                HHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 13 lkyaesDvvivGaGssGLtaayylakkpdlkvailers 50
                 k  + Dv+i+GaG++G+ +a  la + +++v i++++
  CDO68377.1  8 TKASKVDVLIIGAGPAGVMCANALAMA-GVNVRIIDQR 44
                566789*********************.*******975 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.0   1.3e-06     0.001       1      30 [.      16      44 ..      16      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +IiGaGPaG+ +a +l  ag+ ++ i+++ 
   CDO68377.1 16 LIIGAGPAGVMCANALAMAGV-NVRIIDQR 44
                 6********************.799**986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.7   2.4e-06    0.0019       1      32 [.      14      45 ..      14      47 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  Dv+++G+gpaGv++A a a aG +v ++++r+
    CDO68377.1 14 DVLIIGAGPAGVMCANALAMAGVNVRIIDQRP 45
                  9****************************998 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.4e-06    0.0042       1      42 [.      14      55 ..      14      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.4e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsg 42
                dv+iiG+G +G+ +A +La +g  V +++++  +   a g + g
  CDO68377.1 14 DVLIIGAGPAGVMCANALAMAGvnVRIIDQR-PVK-VAAGQADG 55
                8******************99*********9.555.55555554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   4.8e-06    0.0037       1      32 [.      14      45 ..      14      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.8e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkl 32
                dv +iG+G AG+ +A a+a +G++v +i ++ 
  CDO68377.1 14 DVLIIGAGPAGVMCANALAMAGVNVRIIDQRP 45
                799***********************996654 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   4.9e-06    0.0039      26      79 ..      10      65 ..       2      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.9e-06
                 B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH..TTTCECEEHC CS
  AlaDh_PNT_C 26 vepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles..lgakfvevlk 79
                 +++  vl+iG+G aG+  +++ +  g +V+++D rp +    ++  ++ +++evl+
   CDO68377.1 10 ASKVDVLIIGAGPAGVMCANALAMAGVNVRIIDQRPVKVAAGQAdgIQPRTIEVLQ 65
                 45677******************************988776555457777777744 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.6   2.6e-05      0.02       1      35 [.      14      46 ..      14      53 .. 0.89
   2 ?   -0.8   0.0       0.8   6.2e+02     255     314 ..     310     367 ..     302     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   Dv++iGaGpAg+  A+ l  a +g++v +i+  p 
     CDO68377.1 14 DVLIIGAGPAGVMCANAL--AMAGVNVRIIDQRPV 46
                   9*****************..99********98765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.8
  Lycopene_cycl 255 eqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalresslsarawatlwprerkr 314
                    +++v+ +G a     P  G  + +s+  +  la  +a++lr  + s+    + +  er++
     CDO68377.1 310 NERVFIAGDACHTHSPKAGQGMNASMNDTHNLAWKLAHVLR--GWSDLSLLKTYEFERRK 367
                    566888899999999***********************999..56666655555555554 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   9.2e-06    0.0072       1      68 [.      14      78 ..      14      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.2e-06
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E..E--THHHHTHHHHT--HHHHCHHCT CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe..atipsirkllrlLgideeeflrete 68
                    +++i+G+G+aG + A+ala+a+   ++v ++++  + +   G+  +  p + ++l++ g+ e+ +lre++
      CDO68377.1 14 DVLIIGAGPAGVMCANALAMAG---VNVRIIDQRPVKV-AAGQadGIQPRTIEVLQSYGLGER-LLREAN 78
                    699*******************...9999999887754.344422667777778888888877.777665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.6e-05     0.028       1      65 [.      15      84 ..      15      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-05
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSE.....EEES-TTSHHHHHHTTGGGESE CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreegle.....vvvgdatdeevLeeagiekada 65
                ++iiG+G  G   a+ L  +g +v +id+++ +v+  +++g++     v++  +  e +L+ea+ +++ a
  CDO68377.1 15 VLIIGAGPAGVMCANALAMAGVNVRIIDQRPVKVAAGQADGIQprtieVLQSYGLGERLLREANQMHMAA 84
                68*****************6657**********9999999955445559999999999999999887766 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   7.3e-05     0.057       2      40 ..      15      53 ..      14      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                v +iGaG  G   a+++a ag++V+++d ++ +++++++
  CDO68377.1 15 VLIIGAGPAGVMCANALAMAGVNVRIIDQRPVKVAAGQA 53
                779**************************9988877765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.6e-05     0.075       1      42 [.      15      57 ..      15      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.6e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlr 42
                ++i+GaG  G ++a  La ag +v +i++++ +++a + +G++
  CDO68377.1 15 VLIIGAGPAGVMCANALAMAGVNVRIIDQRPvKVAAGQADGIQ 57
                68*****************************999999999886 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00012     0.092       1      34 [.      15      49 ..      15     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
                EEEE--STTHHHHHHHHHHHTEEEEEEES-G.GGG CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpre.efa 34
                ++i+Gag+ +  +a+ +a++g++v ++d+r+ ++a
  CDO68377.1 15 VLIIGAGPAGVMCANALAMAGVNVRIIDQRPvKVA 49
                68*****************************5443 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00014      0.11      15      50 ..       9      43 ..       3      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                HHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEES CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 15 kLrdskvllvGaGglGsellknLalsGvgkltlvDn 50
                k +++ vl++GaG  G  ++ +La++Gv +++++D+
  CDO68377.1  9 KASKVDVLIIGAGPAGVMCANALAMAGV-NVRIIDQ 43
                556799*********************9.5777775 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00018      0.14       3      42 ..      15      54 ..      13      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTT CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideekvdklnsg 42
                    + +iG+G  G+++a +la +g++v ++D    kv++ +++
      CDO68377.1 15 VLIIGAGPAGVMCANALAMAGVNVRIIDQRPVKVAAGQAD 54
                    789*******************************976665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00028      0.22       6      59 ..       7      59 ..       2      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00028
                  HHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH  6 kleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge 59
                  ++ + ++  vl+iGaG  +   a++L+ +gv+  ++  R ++ a+  a+ ++  
    CDO68377.1  7 IT-KASKVDVLIIGAGPAGVMCANALAMAGVNVRIIDQRPVKVAAGQADGIQPR 59
                  44.577899**********************96666677766666666655555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00043      0.33       2      37 ..      17      48 ..      16      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00043
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep.g 37
                   i+GaGp+G++++++L+        +++ ++d+++   
     CDO68377.1 17 IIGAGPAGVMCANALAMA-----GVNVRIIDQRPVkV 48
                   9**************988.....58888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 3976.33
//
Query:       CDO68378.1  [L=1166]
Description: hypothetical protein BN946_scf184815.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-66  222.6   0.0    1.4e-65  221.3   0.0    1.7  1  UCH         Ubiquitin carboxyl-terminal hydrolase
    1.9e-19   70.5   0.0    3.9e-18   66.1   0.0    2.2  1  UCH_1       Ubiquitin carboxyl-terminal hydrolase
     0.0016   18.9   0.0     0.0039   17.7   0.0    1.6  1  Rhodanese   Rhodanese-like domain
     0.0057   16.4   0.3      0.013   15.2   0.3    1.6  1  zf-MIZ      MIZ/SP-RING zinc finger
  ------ inclusion threshold ------
      0.029   14.5   0.0      0.057   13.6   0.0    1.4  1  USP8_dimer  USP8 dimerisation domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   0.0   3.9e-69   1.4e-65       2     257 .]     809    1161 ..     808    1161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 221.3 bits;  conditional E-value: 3.9e-69
                  EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH    2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfsgykqq 98  
                  Gl+NlGntCymns++QcL+++ ++++++++        r+k+ +n  np+g+kg+la a++++++++++ + + +sP +++++l + a++fsg++q+
  CDO68378.1  809 GLKNLGNTCYMNSTIQCLSATVPFARFFTD-------GRWKSAINMVNPMGTKGNLAAAFASILRDMWQGEGSTLSPVTFRRSLCSHAPQFSGSEQH 898 
                  9*****************************.......8999999************************889************************** PP

                  EHHHHHHHHHHHHHHHHCC.......................HCCCHHHHHHCCCTTSHHHHHH-EEEEE........................... CS
                  xxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
         UCH   99 DaqEflaflLdqlhedlnr.......................evaeekwkkhlkrndslitdlfegqlks........................... 145 
                  D+qEfl+flLd+lhedlnr                         +e++w+    r dsl++d f+gq+++                           
  CDO68378.1  899 DSQEFLSFLLDGLHEDLNRiiqkpqivstpereaelerlppqIASEQEWQIYRMRDDSLVVDFFQGQYRNrmecltchktsttyntfmyltlpippt 995 
                  *****************************************85577889************************************************ PP

                  ........................................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S.EEE-GGGBSS-BTTS-TCS- CS
                  ........................................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
         UCH  146 ........................................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe.eldlssylaeekkkkteekk 200 
                                                          +l+l+rlP++L+ihlkRfs +    +K++t vefp+  ldl++y+     +  + + 
  CDO68378.1  996 rsnskvtlqqcidafvkeeimdhsdawhcphcktlrkatkRLSLSRLPPVLLIHLKRFSAKGPfTDKIETFVEFPLkGLDLTNYMPPPLPPGMSAGS 1092
                  ************************************************************999************8789999666666666655555 PP

                  B..............EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTTCEEEEEE CS
                  x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  201 k..............YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevlssayiLfY 257 
                  +              Y+L++v +H G+ls GHY+a+i+  ++g W+++dD++v++ ++++ v + ayiLfY
  CDO68378.1 1093 QispddprcqqppyrYDLYGVTNHFGTLSTGHYTAFIA--SRGGWLYCDDSRVTSADAKDVVGKPAYILFY 1161
                  566666666677777***********************..8899*************9976667******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.1e-21   3.9e-18       1     297 [.     808    1130 ..     808    1143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.1e-21
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1    1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckke.......hcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeet 90  
                  sGL n  +++Y+Ns +Q+l  + p+ ++ +    k+  +          L+  +  +++ + +++g++     F r+l s+    ++     e+++ 
  CDO68378.1  808 SGLKNLGNTCYMNSTIQCLSATVPFARFFTDGRWKSAINMvnpmgtkGNLAAAFASILRDMWQGEGSTLSPVTFRRSLCSHA--PQFSGS--EQHD- 899 
                  8*********************88887766555332222234444447888888888899999***************9887..555553..3223. PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   91 ekssaislssliqsfnrflldqlekelketkkns.............................seeesaieqllgtkaettirclkCgseksrksst 158 
                              q+f  flld l+++l++  +++                              +++s + + ++ ++ ++++cl+C+++++  +++
  CDO68378.1  900 -----------SQEFLSFLLDGLHEDLNRIIQKPqivstpereaelerlppqiaseqewqiyrMRDDSLVVDFFQGQYRNRMECLTCHKTSTTYNTF 985 
                  ...........267999999999999999887778999999999999999999*999999999888999999************************* PP

                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx.......... RF
       UCH_1  159 lvldlkyP.kpsnekkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakleee.....eelelwkt.......... 236 
                  + l l  P +     +++kvt+++++ +++++   +++    C++Ck+    ++r ++ +lPpvL++++k++++     +      +          
  CDO68378.1  986 MYLTLPIPpTR----SNSKVTLQQCIDAFVKEeimDHSDAWHCPHCKTLRKATKRLSLSRLPPVLLIHLKRFSAkgpftD------Kietfvefplk 1072
                  **999665333....344566666666666663322444556*****************************977243331......13333335555 PP

                  ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  237 ....knwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvk 297 
                      +n++p+ +   ++        ++ ++++ + ++  + Y+L +v  h g + + gh+ +++ 
  CDO68378.1 1073 gldlTNYMPPPLPPGMSA------GSQISPDDPRCQQPPYRYDLYGVTNHFG-TLSTGHYTAFIA 1130
                  555544444444444443......344555555678899*************.656*******97 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-06    0.0039       5     106 ..     381     504 ..     378     505 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
   Rhodanese   5 lkellekgkva..llDvRppeeYekghI.pgAvnv.....skdtlsrakkseapllelpeellel.......gidnkktvvvycdgggraaaa....aa 84 
                 l+e ++k++ +  llDvR++ee+e+ hI   Av             + + + ++  e+  ++ ++       ++ + + v +y+d+++ ++        
  CDO68378.1 381 LHEYRNKPNFKvlLLDVRTREEFEREHIrADAVICiepsvL-----MRSNVTGQTIEDALAVGPRdeavlfaNREKFDLVGIYDDSSETMNDPrspvSV 474
                 5566677777778***************5455555555441.....222222222222222222234466789999*************8888554322 PP

   Rhodanese  85 llk.......k.lGykn.vsvldGGfkawke 106
                 l++       +   +kn   +l GG++awk+
  CDO68378.1 475 LFEaiyerefRkI-LKNmPMLLIGGLQAWKR 504
                 4446654443132.3777***********97 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   3.6e-06     0.013      24      48 ..    1004    1028 ..     987    1030 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
                  S--EEHHHHHHHHHHS---B-TTT- CS
      zf-MIZ   24 lqCfdlesylelnertetWnCPvCs 48  
                  +qC+d+ +  e+++++ +W+CP C+
  CDO68378.1 1004 QQCIDAFVKEEIMDHSDAWHCPHCK 1028
                  7***********************8 PP

>> USP8_dimer  USP8 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.057      10     109 ..      10     114 ..       5     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
  USP8_dimer  10 ssledLkkladklkkdkknksikrllrsaeklfkkAeeyrlegdeEkAYvlymkylnllelIrkksdykekkasvkellg.....dkkankvildklek 103
                 + + ++k+ a+ +  + +  s   ll+sa+  ++ A ++  egd   A   ++k  +l++l  ++++++++     ++ +     ++++ + ++ k+++
  CDO68378.1  10 DTVAEIKESAKGIVHQVRGASAPSLLKSARSQIQLARAQENEGDIKAALTSLTKAASLVQLFMETPEFRADTGRKGAIYKefmdfQQTDGRDLFGKTKS 108
                 567788888888888899999999*********************************************988766665555555788888888999999 PP

  USP8_dimer 104 LkesLk 109
                 ++++L 
  CDO68378.1 109 IEQKLV 114
                 999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 7199.79
//
Query:       CDO68379.1  [L=946]
Description: hypothetical protein BN946_scf184815.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-20   71.3   2.4    6.5e-20   71.3   2.4    4.3  4  zf-HC5HC2H_2     PHD-zinc-finger like domain
    1.2e-15   57.6   1.3    1.2e-15   57.6   1.3    4.6  4  zf-HC5HC2H       PHD-like zinc-binding domain
    1.2e-13   50.7  58.0    7.4e-09   35.4   9.3    6.0  6  PHD              PHD-finger
    1.7e-12   47.3   0.0    4.4e-12   45.9   0.0    1.7  1  BAH              BAH domain
    0.00052   19.5   2.8    0.00052   19.5   2.8    6.7  7  PHD_2            PHD-finger
     0.0011   18.5   3.1     0.0011   18.5   3.1    3.7  3  GATA             GATA zinc finger
     0.0013   18.9   0.1     0.0044   17.2   0.1    1.9  1  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0073   17.0   0.0      0.022   15.5   0.0    1.9  1  ELM2             ELM2 domain
  ------ inclusion threshold ------
        0.1   13.0  36.0       0.11   12.9   0.8    6.1  7  C1_2             C1 domain
       0.96    9.5   5.4        2.9    8.1   5.4    1.8  1  AT_hook          AT hook motif
       0.99    9.6  25.9      0.095   12.9   2.4    4.7  4  FYVE_2           FYVE-type zinc finger


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.4     0.005       8.1      57      86 ..     187     216 ..     166     224 .. 0.83
   2 ?    4.5   2.2     0.023        37      54      84 ..     622     653 ..     605     663 .. 0.81
   3 !   71.3   2.4     4e-23   6.5e-20      12      96 ..     709     792 ..     706     824 .. 0.88
   4 ?   -3.4   0.2       6.5   1.1e+04      54      64 ..     895     905 ..     877     929 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
  zf-HC5HC2H_2  57 kCllCkkr..kGaciqCskkeCktafHvtCal 86 
                    C +C+k      ++qC +  Ck+ fH+ C  
    CDO68379.1 187 LCDTCEKWcpPADTLQCDR--CKKFFHMECVN 216
                   5888888776677899998..*********75 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.023
  zf-HC5HC2H_2  54 lkekCllCkkr..kGaciqCskkeCktafHv.tC 84 
                    +++C+ C+++   G  ++C++  C+   H+ +C
    CDO68379.1 622 PQLRCVACQRNgpIGKVLRCKQ--CQFRVHAaVC 653
                   4689******9999******99..**99996245 PP

  == domain 3  score: 71.3 bits;  conditional E-value: 4e-23
  zf-HC5HC2H_2  12 alkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaaglvmeled 96 
                   a k t+ ++wvHv+C +++pe++fs+ ++ + v+ v++i++ r++++C+lC+++ Ga iqCs+  C + +Hv Ca+++g  + +e 
    CDO68379.1 709 ACKPTEGQAWVHVICSVFIPEITFSDATRLRLVEgVSAIPQYRWQNSCTLCDREDGAVIQCSE--CPAEYHVSCAWKHGHKFGFEI 792
                   6799999*******************************************************9..************997765543 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 6.5
  zf-HC5HC2H_2  54 lkekCllCkkr 64 
                   +  +C+ C+++
    CDO68379.1 895 ADPHCYRCQTE 905
                   55666666653 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.0     0.011        17      38      67 ..     187     216 ..     172     234 .. 0.86
   2 ?    2.6   5.2       0.1   1.6e+02      36      68 ..     623     656 ..     615     687 .. 0.85
   3 !   57.6   1.3   7.1e-19   1.2e-15       1      77 [.     720     795 ..     720     825 .. 0.86
   4 ?   -1.9   0.2       2.5     4e+03      31      45 ..     891     905 ..     875     932 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
  zf-HC5HC2H  38 kCylCkkk..vGaciqCskkkCkkafHvtCak 67 
                  C  C+k      ++qC++  Ckk fH+ C  
  CDO68379.1 187 LCDTCEKWcpPADTLQCDR--CKKFFHMECVN 216
                 588898764456799**98..*********75 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.1
  zf-HC5HC2H  36 klkCylCkkk..vGaciqCskkkCkkafHv.tCake 68 
                 +l+C+ C+++  +G +++C++  C+ + H  +C+ +
  CDO68379.1 623 QLRCVACQRNgpIGKVLRCKQ--CQFRVHAaVCGVN 656
                 789*****99889******98..**99996357765 PP

  == domain 3  score: 57.6 bits;  conditional E-value: 7.1e-19
  zf-HC5HC2H   1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagllleee...e 77 
                 Hv+C ++ipe++f+++++     +e+v+ i++ r++++C+lC+++ Ga+iqCs+  C + +Hv Ca ++g+++ +e    
  CDO68379.1 720 HVICSVFIPEITFSDATR--LRLVEGVSAIPQYRWQNSCTLCDREDGAVIQCSE--CPAEYHVSCAWKHGHKFGFEiqpV 795
                 9************99987..899*****************************99..**************9999874441 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.5
  zf-HC5HC2H  31 kkerkklkCylCkkk 45 
                  +++ + +Cy C+++
  CDO68379.1 891 TQSAADPHCYRCQTE 905
                 455566678888865 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   9.3   4.5e-12   7.4e-09       2      51 ..     188     236 ..     187     237 .. 0.93
   2 ?   -1.5   1.6       1.4   2.3e+03      15      22 ..     565     572 ..     543     575 .. 0.60
   3 !   23.2   5.9   2.9e-08   4.8e-05       1      51 [.     625     672 ..     625     673 .. 0.94
   4 ?   -3.4   0.0       5.7   9.3e+03      23      30 ..     717     724 ..     713     727 .. 0.83
   5 !   14.9   4.7   1.1e-05     0.019       2      30 ..     756     781 ..     755     785 .. 0.94
   6 ?    3.5   3.0     0.042        68      18      51 ..     899     931 ..     893     932 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.5e-12
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C+ C+k +  + +++qCd+Ck+ fH++C++pp+ s++     w+C  C++
  CDO68379.1 188 CDTCEK-WCPPADTLQCDRCKKFFHMECVNPPMLSKPSRGYGWTCAPCSR 236
                 ******.***************************8888777*******86 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
                 EEEETTTS CS
         PHD  15 lvqCdgCk 22 
                  v+Cd+C+
  CDO68379.1 565 GVLCDNCG 572
                 58999997 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 2.9e-08
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 rC +C++ +   ++++ C++C+  +H + ++++ +++ +++  w+C+ C++
  CDO68379.1 625 RCVACQR-NGPIGKVLRCKQCQFRVHAAVCGVNPDPTTIDS--WVCDLCQN 672
                 6******.99*************************888876..******97 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5.7
                 CEEETTTS CS
         PHD  23 rwfHqkCl 30 
                  w+H+ C 
  CDO68379.1 717 AWVHVICS 724
                 699*9996 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 1.1e-05
                 BTTTTSTTSTTSCEEEETTTSCEEETTTS CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkCl 30 
                 C +C++   e++ ++qC +C   +H++C 
  CDO68379.1 756 CTLCDR---EDGAVIQCSECPAEYHVSCA 781
                 9*****...89*****************5 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.042
                 ETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD  18 CdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C +C++ f +  ++++ + + +  ++wlC +C+ 
  CDO68379.1 899 CYRCQTEFSPFFHEVTNTAQGE-AKSWLCHRCHA 931
                 8888888888888888774444.459******85 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   2.7e-15   4.4e-12       7     122 .]      24     149 ..      20     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 2.7e-15
                 GEEEEEETT...STTEEEEEEEEEE.........EEETTSTCEEEEEEEEEEECGGGSTTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTE CS
         BAH   7 dfVyfddts...tdepyqirrIeeL.........kenakneeaeatvlvdwflrpeetksalklrqkrElfltrqseilplaairgkcrVvllsdleea 93 
                 d Vy +++    +  py+i+rI e+          ++ k++e   +v++ w++rp+++ s++ +++ r l +  +se++ l++ r kc V+++ ++ ++
  CDO68379.1  24 DHVYCSPSWavrDGTPYSIARIMEFlpapgtptfDKDGKRSEPITRVRLAWYYRPSDV-SDRTVADCRLLLAAIYSEVCELSQLRSKCYVLHRDRISDL 121
                 667777766777899*****************987777777999**************.77777777******************************** PP

                 CCHCHHCSTTEEEEEEEEET.TTTEEEE-S CS
         BAH  94 qnylpkklddtFycslvydp.taktfkkdk 122
                    ++  ++d+Fy+  ++dp  +k f+ ++
  CDO68379.1 122 AGWKK--RPDRFYFTRLFDPwLRKEFEVIP 149
                 *9998..*************9999998775 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.9     7e-05      0.11       5      35 ..     201     234 ..     199     235 .. 0.80
   2 ?   -4.3   0.3       8.7   1.4e+04       5      11 ..     542     548 ..     542     549 .. 0.70
   3 ?   -1.3   0.2         1   1.7e+03       5      12 ..     566     573 ..     564     574 .. 0.76
   4 !   19.5   2.8   3.2e-07   0.00052       4      35 ..     638     670 ..     635     671 .. 0.89
   5 ?    3.8   0.5     0.026        42       4      18 ..     766     780 ..     764     783 .. 0.91
   6 ?   -1.7   0.1       1.3   2.1e+03      17      23 ..     898     904 ..     897     908 .. 0.73
   7 !    5.6   0.3    0.0071        12      25      35 ..     919     929 ..     915     930 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-05
       PHD_2   5 lsCdkCsvaVHasCYG...vskesdgeeWlCrrC 35 
                 l+Cd+C+  +H++C     +sk+s g +W+C+ C
  CDO68379.1 201 LQCDRCKKFFHMECVNppmLSKPSRGYGWTCAPC 234
                 79************97333556666666****99 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 8.7
       PHD_2   5 lsCdkCs 11 
                 ++C  C+
  CDO68379.1 542 VICGACR 548
                 6788886 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1
       PHD_2   5 lsCdkCsv 12 
                 + Cd+C +
  CDO68379.1 566 VLCDNCGL 573
                 67999976 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 3.2e-07
       PHD_2   4 llsCdkCsvaVHasCYGvskesdgee.WlCrrC 35 
                 +l C++C+ +VHa+  Gv+++++  + W+C+ C
  CDO68379.1 638 VLRCKQCQFRVHAAVCGVNPDPTTIDsWVCDLC 670
                 799**********999*9999988667****** PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.026
       PHD_2   4 llsCdkCsvaVHasC 18 
                 +++C++C    H sC
  CDO68379.1 766 VIQCSECPAEYHVSC 780
                 89************* PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.3
       PHD_2  17 sCYGvsk 23 
                 +CY++++
  CDO68379.1 898 HCYRCQT 904
                 6888776 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0071
       PHD_2  25 sdgeeWlCrrC 35 
                  ++++WlC rC
  CDO68379.1 919 GEAKSWLCHRC 929
                 56779****** PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   3.1   6.7e-07    0.0011       1      34 [.     544     579 ..     544     581 .. 0.92
   2 ?   -2.5   0.8       2.5   4.1e+03      13      26 ..     631     644 ..     628     647 .. 0.82
   3 ?   -0.6   0.6      0.65   1.1e+03       1      26 [.     899     929 ..     899     935 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.7e-07
        GATA   1 CsnCgttkTplWRrgpdgnks..LCnaCGlyykkkg 34 
                 C  C+t+++  W ++p g +s  LC +CGl ++k+ 
  CDO68379.1 544 CGACRTRESEAWWKAPKGLPSgvLCDNCGLSWRKYA 579
                 999**************988666***********96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
        GATA  13 RrgpdgnksLCnaC 26 
                 R+gp g+   C++C
  CDO68379.1 631 RNGPIGKVLRCKQC 644
                 88899999889999 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.65
        GATA   1 CsnCgttkTplWRrg.....pdgnksLCnaC 26 
                 C  C+t ++p  ++      ++ +  LC  C
  CDO68379.1 899 CYRCQTEFSPFFHEVtntaqGEAKSWLCHRC 929
                 8888888888666654444434444466655 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.7e-06    0.0044       3      41 ..     452     490 ..     450     495 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsr 41 
                       W++eE   +++a++ hG   +++ e++g+Rt  ++  +
       CDO68379.1 452 DWSAEEVAAFEDAIQVHGAELRAVCEEVGTRTMPEVVRF 490
                      7*******************************8777665 PP

>> ELM2  ELM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.022       2      26 ..     324     348 ..     323     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
        ELM2   2 RVGpkYQAeiPdllepeereakeee 26 
                 RVGpkYQA +P+  + ++r a+ ee
  CDO68379.1 324 RVGPKYQANVPPAPGGADRPADVEE 348
                 9**********99988888887655 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6     0.001       1.7      15      47 .]     182     215 ..     174     215 .. 0.85
   2 ?   -2.6   0.1       4.4   7.2e+03      19      27 ..     542     550 ..     538     553 .. 0.77
   3 ?   12.4   0.2     9e-05      0.15      18      44 ..     623     650 ..     614     653 .. 0.81
   4 ?    0.1   0.5      0.66   1.1e+03      17      27 ..     663     673 ..     657     687 .. 0.82
   5 ?   12.9   0.8   6.5e-05      0.11      17      47 .]     752     781 ..     737     781 .. 0.87
   6 ?   -1.5   0.2         2   3.3e+03      17      31 ..     895     909 ..     888     914 .. 0.65
   7 ?   -3.5   2.1       8.8   1.4e+04      15      26 ..     920     931 ..     897     937 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.001
        C1_2  15 ssesfnCsaCgrkidgff.YsCseCdfslhvrCa 47 
                  ++ + C++C++   + +   C++C+ ++h++C+
  CDO68379.1 182 TDDLRLCDTCEKWCPPADtLQCDRCKKFFHMECV 215
                 577899*******655557**************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.4
        C1_2  19 fnCsaCgrk 27 
                   C aC++ 
  CDO68379.1 542 VICGACRTR 550
                 56****975 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 9e-05
        C1_2  18 sfnCsaCgrk..idgffYsCseCdfslhv 44 
                 + +C aC+r+  i g+  +C++C+f +h 
  CDO68379.1 623 QLRCVACQRNgpI-GKVLRCKQCQFRVHA 650
                 578*******644.566***********5 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.66
        C1_2  17 esfnCsaCgrk 27 
                 +s+ C++C+++
  CDO68379.1 663 DSWVCDLCQNE 673
                 6799****997 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 6.5e-05
        C1_2  17 esfnCsaCgrkidgffYsCseCdfslhvrCa 47 
                  + +C +C+r+ dg    CseC    hv+Ca
  CDO68379.1 752 WQNSCTLCDRE-DGAVIQCSECPAEYHVSCA 781
                 5679*******.78899*************8 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2
        C1_2  17 esfnCsaCgrkidgf 31 
                 ++ +C  C+++ ++f
  CDO68379.1 895 ADPHCYRCQTEFSPF 909
                 555677777764444 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 8.8
        C1_2  15 ssesfnCsaCgr 26 
                 + +s+ C+ C  
  CDO68379.1 920 EAKSWLCHRCHA 931
                 344566666655 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.4    0.0018       2.9       2      11 ..     265     274 ..     264     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0018
     AT_hook   2 RkRGRPrKaa 11 
                 R+RGRPrK++
  CDO68379.1 265 RGRGRPRKDK 274
                 9*******85 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.0     0.014        23      71     105 ..     200     239 ..     159     246 .. 0.82
   2 ?   12.9   2.4   5.8e-05     0.095      56     107 ..     625     677 ..     608     681 .. 0.80
   3 ?   -2.2   2.1       2.7   4.5e+03      72     113 ..     767     808 ..     750     811 .. 0.76
   4 ?    5.7   0.1    0.0099        16      52      90 ..     894     934 ..     867     940 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
      FYVE_2  71 krqCldCklnvCkkCsve.....nkkekvwlCkiCseaRe 105
                 + qC+ Ck++   +C +        +  +w C++Cs+a e
  CDO68379.1 200 TLQCDRCKKFFHMECVNPpmlskPSRGYGWTCAPCSRAHE 239
                 579*******9999998778854455668******98865 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.8e-05
      FYVE_2  56 hCilCleefkllvnskrqCldCklnvCkk.Csve..nkkekvwlCkiCseaRevk 107
                 +C+ C ++    + +   C++C++ v  + C+v+    +   w+C+ C++++++ 
  CDO68379.1 625 RCVACQRNG--PIGKVLRCKQCQFRVHAAvCGVNpdPTTIDSWVCDLCQNEKTLE 677
                 566666553..4556778********8877999965556678********99875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.7
      FYVE_2  72 rqCldCklnvCkkCsvenkkekvwlCkiCseaRevkkksleW 113
                  qC++C  +   +C+ ++ ++ ++  ++ +++R     +++W
  CDO68379.1 767 IQCSECPAEYHVSCAWKHGHKFGFEIQPVKHSRRETPTTVDW 808
                 589999999999999999999999888888888877777777 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0099
      FYVE_2  52 lgethCilCleefk.llvnsk.rqCldCklnvCkkCsvenk 90 
                  ++ hC +C +ef  ++ + +     + k  +C++C +e++
  CDO68379.1 894 AADPHCYRCQTEFSpFFHEVTnTAQGEAKSWLCHRCHAETR 934
                 45667888888876333332213344567777887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 5696.60
//
Query:       CDO68380.1  [L=237]
Description: hypothetical protein BN946_scf184815.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-08   33.1   0.0      8e-08   31.8   0.0    1.5  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   4.5e-12     8e-08       5      98 ..      20      98 ..      16     102 .. 0.80
   2 ?   -2.3   0.0      0.11     2e+03     263     287 ..     192     217 ..     181     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 4.5e-12
                  E-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red  5 GtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98
                  Gt      ++  +++a +l+  a  +Gi ++DtA++Y   ++ e +G  ++ ++ +ree++++tK+        +  + + +res+ esl rL+
    CDO68380.1 20 GTV-----TTLLRQDASKLVANANTHGIIHLDTAQLY---ENKESIGAGIALAGRPREELFVTTKI-------ADLPEGKTVRESFMESLARLR 98
                  333.....356689***********************...66666666555555************.......666677899999999999997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.11
                   --SSHHHHHHHHGGGG-.---HHHHH CS
  Aldo_ket_red 263 gasnieqlednldalel.klseeeva 287
                    +s++e++++ ++  +l +l++ee++
    CDO68380.1 192 TSSKLERVKEYIATESLpDLTQEEMD 217
                   57899999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 1520.60
//
Query:       CDO68381.1  [L=371]
Description: hypothetical protein BN946_scf184815.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-19   68.7   0.2    4.6e-18   65.6   0.2    2.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.9e-12   46.8   0.0    1.6e-11   43.7   0.0    2.0  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.8e-10   39.3   0.1    8.3e-10   38.9   0.1    1.2  1  NAD_binding_10   NAD(P)H-binding
    1.7e-09   37.5   0.0    2.9e-09   36.8   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.5e-05   24.3   0.3    3.1e-05   23.2   0.3    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0018   17.9   0.3     0.0034   17.0   0.3    1.5  1  NmrA             NmrA-like family
      0.008   15.4   0.8       0.33   10.1   0.8    2.2  1  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
       0.03   13.8   0.3      0.065   12.7   0.3    1.7  1  adh_short        short chain dehydrogenase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.2   2.1e-21   4.6e-18       1     229 [.       7     278 ..       7     287 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.1e-21
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HH..HHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrs..alerlfkeeqpdavihlAa.vggvaassedpadfieknlqg 94 
                 +lVtGa+GfiGs+++ +ll++gy+v g +r ++ +   r+     e+  +++ d +  +++++++ + +++v+h A   +g + + +   ++ ++ ++g
  CDO68381.1   7 VLVTGASGFIGSHVTFQLLQAGYRVRGTARGPKVDLLRRRFSSnkEFEVVEISDIAsgDFKAALQGHSVNTVVHTASpLAGRQSTEDALHYLGQSIIEG 105
                 79*****************************7776666666559977777777777669******************99999999999999999***** PP

                 HHHHHHHHHHHTCTEEEEEEE..GGGGT.............SCSSSS....BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT............ CS
   Epimerase  95 tlnlleaarkagvkrllflsS..sevYG.............kdaeqp....keettltgpl.kpnspYaaaKlageklveayaaqyg............ 161
                 t+n++  a+kagv +++  sS  +++ +             k           e++  +    p   Y  aKl++e+ ++++aa++             
  CDO68381.1 106 TMNVIRHAHKAGVVKVILTSSwaTTIDPslvdtftgvttteK----SwgktSREDL--K-ErDPLYVYCGAKLLAEQAAWDFAAKHRdldlatseneqp 197
                 *********************744444477777776643221....1321133333..3.3599**********************77*********** PP

                 ..........-EEEEEEESEEESTT.....S-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 162 ..........lnaiilrlfnlyGpr.....ngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehv 229
                           + a ++++  +yG       +g+g +s    ali ++ +g++   l  ++t+   +++v+Dva+a++l+l+ +
  CDO68381.1 198 lvfflqflllILAHAVNPPFVYGRPveglvTGKGVMSLGTNALIYQLIAGEPGRPLPPQLTP--FYCHVRDVARAHVLALKLP 278
                 ****8888887888888888899888888888888888889999999999988888889999..69*************9875 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   7.2e-15   1.6e-11       1     122 [.       8     132 ..       8     175 .. 0.76
   2 ?    0.8   0.0      0.09     2e+02     217     248 ..     263     293 ..     258     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 7.2e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk..viegDvtdkdkleealegvdvvihlaslvdvagklt.edeim...kvnv 93 
                 +vtG++GF+G+++  +L++++    vr      +  ll + +++n +   v   D+ +  + ++al+g +v+ ++++++++ag+++ ed +    + ++
  CDO68381.1   8 LVTGASGFIGSHVTFQLLQAGY--RVRGTARGPKVDLLRRRFSSNKEFevVEISDIAS-GDFKAALQGHSVNTVVHTASPLAGRQStEDALHylgQSII 103
                 69*******************5..5665554444444444444444323345567665.578**********99999*****9655055433233789* PP

   3Beta_HSD  94 kGTrnvleacvkagvrvlvYtSsaevvgp 122
                 +GT nv+  + kagv +++ tSs     +
  CDO68381.1 104 EGTMNVIRHAHKAGVVKVILTSSWATTID 132
                 ***********************876555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.09
   3Beta_HSD 217 YvgNvawahilAaralqdpkkkssvagqayfi 248
                  v  va ah+lA +  + p  +  v+ + + +
  CDO68381.1 263 HVRDVARAHVLALKLPKLP-ASADVQEKRFIV 293
                 5789********9976666.556666666665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   3.7e-13   8.3e-10       1     102 [.      11     130 ..      11     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 3.7e-13
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHH.HC..HHHHCTTTCEEEE--TT-CCHHHHHHTT-S..EEEES-...--TCCHHHH.......... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpe.kl..aeleaeeglevvegdvtdvedlaealkgad..aVvsal...ggggkdeeg.......... 77 
                     GA+G +G++++ +ll++ g++v+  +R p+ +l   +++++++ evve++   + d ++al+g++  +Vv ++   +g++++e++          
      CDO68381.1  11 GASGFIGSHVTFQLLQA-GYRVRGTARGPKvDLlrRRFSSNKEFEVVEISDIASGDFKAALQGHSvnTVVHTAsplAGRQSTEDAlhylgqsiie 104
                     9****************.5********98642233468899*******988889**********9445888886775555555557888999999 PP

                     .HHHHHHHHHHCT--EEEEEEETTTT CS
  NAD_binding_10  78 .aknivdaakeagvkRfvlvsaigvg 102
                      + n+++ a +agv +++l s+  ++
      CDO68381.1 105 gTMNVIRHAHKAGVVKVILTSSWATT 130
                     9********************97765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.3e-12   2.9e-09       1     129 [.       8     126 ..       8     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.3e-12
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG +GfiGs+++ +Ll+ gy+v g+ r  +   ++r          + ++++++++     s   + +l+ + +++v++ A   + ++s e++ 
     CDO68381.1   8 LVTGASGFIGSHVTFQLLQAGYRVRGTARGPKVDLLRRR---F-----SSNKEFEVVEISDIASGDFKAALQGHSVNTVVHTASPLAGRQSTEDAL 95 
                    9*************************9887665332222...2.....2234555555444447889***************************97 PP

                    HH.HHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  97 yt.aevnvlGtlrLLeairalglekkvrfyqaSt 129
                     +  +  + Gt++++  + ++g+   v+++ +S+
     CDO68381.1  96 HYlGQSIIEGTMNVIRHAHKAGV---VKVILTSS 126
                    661577778******99999997...56666665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.3   1.4e-08   3.1e-05       1     128 [.       7     126 ..       7     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.4e-08
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE---.---HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAA.lKhVPlv 93 
                      vlvtGa+G iGs+++ q+l+   + ++       k++ ++++++   ++k+  +e v+ i d++     + al+ ++v++v+h+A  l      
       CDO68381.1   7 VLVTGASGFIGSHVTFQLLQAGYR-VRG-TARGPKVDLLRRRFS---SNKE--FE-VVEISDIASG-DFKAALQGHSVNTVVHTASpLAGRQST 91 
                      89*****************98765.333.344567777777763...2322..34.5579999865.589999**********99724445566 PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                      e   +   +  + gt+nvi+ a++agv kv+l S+
       CDO68381.1  92 EDALHYLGQSIIEGTMNVIRHAHKAGVVKVILTSS 126
                      7777777778889*******************996 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.3   1.5e-06    0.0034       1     101 [.       7     126 ..       7     137 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHH.HHH.STTEEEES-TT-HHHHHHHHTT-SEEEE---GG................S-HHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselaks.lke.aGvelvkgdlddkeslvealkgvdvvfsvtgfy................skeied 81 
                 +lv+Ga+G +G++v+  ll+ag++vr   R +k +l++  +++ +  e+v+ +       ++al+g  v  +v ++                 +  ie 
  CDO68381.1   7 VLVTGASGFIGSHVTFQLLQAGYRVRGTARGPKVDLLRRrFSSnKEFEVVEISDIASGDFKAALQGHSVNTVVHTASplagrqstedalhylgQSIIEG 105
                 79******************************8777653244303455664433333445555555444444433334455555556666665566666 PP

                 HHHHHHHHHHHS.-SEEEEEE CS
        NmrA  82 gkklvdAakeaG.vkhfiySs 101
                  +++++ a +aG vk ++ Ss
  CDO68381.1 106 TMNVIRHAHKAGvVKVILTSS 126
                 677777777777555555555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.8   0.00015      0.33       1      41 [.       9      47 ..       9     188 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRl 41
                   +TGa+GF+G+++  +LL+     ++   +R  + +  ++R+
     CDO68381.1  9 VTGASGFIGSHVTFQLLQAGY--RVRGTARGPKVDLLRRRF 47
                   7****************9876..566666666555555555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   2.9e-05     0.065       1      33 [.       5      37 ..       5     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESC CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrs 33
                +vvlvtGas+ IG  +  +l+++G++v  ++r 
  CDO68381.1  5 NVVLVTGASGFIGSHVTFQLLQAGYRVRGTARG 37
                69*************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2503.33
//
Query:       CDO68382.1  [L=340]
Description: hypothetical protein BN946_scf184815.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-59  202.4   0.0    1.2e-59  202.3   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.0   6.8e-64   1.2e-59     150     451 ..       1     300 [.       1     312 [. 0.91

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 6.8e-64
                 HHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHH CS
        p450 150 ldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldallla 248
                 ++vi+++++g+r+ +l+d+   e +ka  +  ++  k  v+ + +  +l   +++++++++++++   +l++ l++  re++ + +  + +++ + l+ 
  CDO68382.1   1 MSVIFRLAYGRRVRTLQDDIVVENIKAGGMFGKVPGKYLVESWPILLWLPHRLQWFRHEVDKHRELNRQLYMSLMNRVREQMAEGT-AQPSMATVALER 98 
                 689******************9*********99999999999999999999999*******************************4.566666667777 PP

                 CTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESS CS
        p450 249 kkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevt 347
                 +   +    lsd e a t+     aGv Tt   ++++L+ ++++Pe+q+k +eE+d+v+g +r p+y+d+++lpy+ a ikE+ R +pv+p++ p+++t
  CDO68382.1  99 Q--AE--FGLSDLETAYTLAGPWDAGVGTTVISIEIFLLAMLHHPEIQKKAQEEVDRVVGTSRLPEYSDMESLPYVAALIKEVARWRPVAPTGFPHALT 193
                 5..33..36****************************************************************************************** PP

                 SCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEE CS
        p450 348 kdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppi 446
                 +d + +g+ +pkG +v  n++a+++dpe+fp+P++F+peRFld+k +  + +   + FG+G+R+C+G ++A   ++++++++L  F++ +  + d +p 
  CDO68382.1 194 QDDTYNGHYLPKGATVYANIHAIMQDPELFPEPDVFRPERFLDTKHP--KLQNFTIHFGFGRRICPGLHIANQSIFIVISRFLWAFDILPATGPDGKPV 290
                 ********************************************984..55556688*******************************99887777776 PP

                 ESSC.....S CS
        p450 447 leks.....g 451
                 l+ +     g
  CDO68382.1 291 LPSTddftsG 300
                 6655544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2337.74
//
Query:       CDO68383.1  [L=110]
Description: hypothetical protein BN946_scf184815.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-52  175.9   7.9    2.1e-52  175.7   7.9    1.0  1  PHF5             PHF5-like protein
  ------ inclusion threshold ------
      0.038   11.9   4.8      0.042   11.7   4.8    1.1  1  PolC_DP2         DNA polymerase II large subunit DP2
       0.42   10.7  15.0        1.6    8.8   1.8    2.9  2  DZR              Double zinc ribbon
          2    8.8  17.7       0.37   11.1   2.7    2.6  2  C1_2             C1 domain


Domain annotation for each model (and alignments):
>> PHF5  PHF5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   7.9   4.7e-56   2.1e-52       1     104 []       1     104 [.       1     104 [. 0.99

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 4.7e-56
        PHF5   1 msrhqadlvlcrkqpGtaigklcekcdgkcpicdslvkpatkvricdecsfgkleekciicgskgvsdayyclecvrlekdrdGcpriinvgssktdll 99 
                 ms+h++dl++cr+qpG+aig+lcekcdgkcp+cds+v+p+t vricdec+fg++ ++ciicgs g+sdayyc+ec+rlekdrdGcp+i+n+g+s+tdl+
  CDO68383.1   1 MSKHHPDLIMCRRQPGIAIGRLCEKCDGKCPVCDSYVRPETLVRICDECNFGTYGGRCIICGSPGISDAYYCAECTRLEKDRDGCPKIVNLGASRTDLF 99 
                 9************************************************************************************************** PP

        PHF5 100 yekkk 104
                 ye+++
  CDO68383.1 100 YERRR 104
                 **985 PP

>> PolC_DP2  DNA polymerase II large subunit DP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.8   9.4e-06     0.042     612     662 ..      37      89 ..      18     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.4e-06
    PolC_DP2 612 ieveiarrkCkkCgketlearCeeCgek.teeklvCkkceeeve.eekcekce 662
                 ++ e   r C++C+  t+  rC  Cg+  ++  ++C +c++ ++ ++ c+k  
  CDO68383.1  37 VRPETLVRICDECNFGTYGGRCIICGSPgISDAYYCAECTRLEKdRDGCPKIV 89 
                 56678899******************98356789******9655488899865 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  13.7    0.0029        13       1      49 []      30      76 ..       8      76 .. 0.80
   2 ?    8.8   1.8   0.00035       1.6       1      19 [.      58      76 ..      58      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0029
         DZR  1 CpqCgeelppda..rfCseCgtklkavaaedrCpsCgekvdpearfCpeCG 49
                Cp C + ++p+   r C+eC+          rC  Cg++  ++a +C eC+
  CDO68383.1 30 CPVCDSYVRPETlvRICDECNFGTY----GGRCIICGSPGISDAYYCAECT 76
                6666666666652247777776666....8********************6 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00035
         DZR  1 CpqCgeelppdarfCseCg 19
                C  Cg++  +da +C eC 
  CDO68383.1 58 CIICGSPGISDAYYCAECT 76
                8888888888999999885 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.3     0.031   1.4e+02      15      40 ..      24      51 ..       2      54 .. 0.73
   2 ?   11.1   2.7   8.3e-05      0.37      19      38 ..      56      75 ..      53      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.031
        C1_2 15 ssesfnCsaCgrkidgff..YsCseCdf 40
                ++ +++C +C+  + ++    +C+eC+f
  CDO68383.1 24 EKCDGKCPVCDSYVRPETlvRICDECNF 51
                455699*******88888889******9 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.3e-05
        C1_2 19 fnCsaCgrkidgffYsCseC 38
                ++C +Cg ++ ++ Y+C eC
  CDO68383.1 56 GRCIICGSPGISDAYYCAEC 75
                58*******76788****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 763.97
//
Query:       CDO68384.1  [L=223]
Description: hypothetical protein BN946_scf184815.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-16   59.2   3.4    3.1e-15   56.0   0.8    2.7  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    2.1e-07   31.0   0.7    4.1e-07   30.0   0.1    1.8  2  ADH_zinc_N       Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.011   16.5   0.0      0.019   15.7   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
      0.013   14.8   0.5      0.029   13.7   0.5    1.5  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.019   14.3   0.0      0.029   13.7   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.8   8.8e-19   3.1e-15       2     109 .]      39     137 ..      38     137 .. 0.87
   2 ?   -3.6   0.1       2.8   9.9e+03      52      61 ..     151     160 ..     149     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 8.8e-19
                 TEEEEEEEEEEE-HHHHHHHTTS.TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg.kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 +evlikv aag+C++D+h+l+ + ++l  +  +i+GHE +G+v+ +g++v         +++p+   ++ a  ++g  n+C e   +g+++dG +aeyv
  CDO68384.1  39 NEVLIKVLAAGVCHTDVHVLEASvTQLLIPGSFIMGHEGAGIVVGHGEDV---------AADPAH-AQRLAVGTRGFANVCFETPAIGLGVDGFWAEYV 127
                 79*******************97677777778***********9988776.........555543.455667899************************ PP

                 EECGGGEEEE CS
       ADH_N 100 vvpekklvkl 109
                  v+++++v++
  CDO68384.1 128 KVRASTVVPV 137
                 *****99986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.8
                 S--TT-EEEE CS
       ADH_N  52 klkvGdrVvv 61 
                 ++k G+ Vv+
  CDO68384.1 151 QVKPGQTVVI 160
                 5789999997 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       3.1   1.1e+04      79      89 ..     152     162 ..     150     163 .. 0.84
   2 !   30.0   0.1   1.1e-10   4.1e-07       1      43 [.     165     209 ..     165     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.1
                 EEEEEEEEECS CS
  ADH_zinc_N  79 lkpgGrlvvvG 89 
                 +kpg ++v+vG
  CDO68384.1 152 VKPGQTVVIVG 162
                 68999999999 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTT CS
  ADH_zinc_N   1 gvGlaavqlAkalGa..eviavdsseeklelakklGadevinyke 43 
                 g+G+ a+q+Ak+     +viavd  ++ l+la++ Gad+++ ++e
  CDO68384.1 165 GLGINAIQIAKHVLHtgTVIAVDLRADSLALAREVGADHAVMPDE 209
                 89*********99999************************98854 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   5.3e-06     0.019       2      42 ..     159     201 ..     158     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
                      EEET-TT.SHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGt.Grltlalakrl.gkakvtgvDiseemleaarerae 42 
                      + +GcG  G +++++ak++ + ++v++vD+ ++ l+ are  +
       CDO68384.1 159 VIVGCGGlGINAIQIAKHVlHTGTVIAVDLRADSLALAREVGA 201
                      55899866**********9889*****************9765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5     8e-06     0.029      26      73 ..     152     202 ..     147     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8e-06
                  B---E.EEEESTSHHHHHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTTC CS
  AlaDh_PNT_C  26 vepak.vlviGgGvaGlqAiatakglga..kVtvlDvrparleqleslgak 73 
                  v+p++ v+++G G  G++Ai++ak +    +V ++D+r++ l   +++ga 
   CDO68384.1 152 VKPGQtVVIVGCGGLGINAIQIAKHVLHtgTVIAVDLRADSLALAREVGAD 202
                  4566427889**************975422799999999998888777765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     8e-06     0.029      45      97 ..     152     205 ..     147     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8e-06
                      S--TTEEEEE.S-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTS CS
  Ubie_methyltran  45 vkrgakvlDv.agGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegk 97 
                      vk+g++v+ v +gG g  a++++++v ++g+v+ +D+ ++ L  +++   ++++
       CDO68384.1 152 VKPGQTVVIVgCGGLGINAIQIAKHVLHTGTVIAVDLRADSLALAREVGADHAV 205
                      7889998888356678889***********************999987666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1562.29
//
Query:       CDO68385.1  [L=607]
Description: hypothetical protein BN946_scf184815.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-79  266.0   0.2    6.7e-79  265.7   0.2    1.1  1  FAD_binding_3   FAD binding domain
    1.8e-31  109.4   0.0    8.2e-31  107.3   0.0    2.0  2  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    4.8e-05   22.3   0.9    7.6e-05   21.6   0.9    1.2  1  HI0933_like     HI0933-like protein
    0.00018   21.6   0.1    0.00058   20.0   0.1    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00025   20.4   0.7    0.00048   19.5   0.2    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0014   18.0   0.7     0.0021   17.4   0.7    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0021   17.2   9.1     0.0032   16.6   2.7    2.1  2  FAD_binding_2   FAD binding domain
     0.0026   17.0   0.2     0.0047   16.2   0.2    1.3  1  Thi4            Thi4 family
     0.0061   16.2   0.6      0.013   15.1   0.2    1.7  2  DAO             FAD dependent oxidoreductase
     0.0063   17.1   0.9      0.038   14.5   0.5    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.01   15.2   3.2      0.016   14.6   3.2    1.5  1  FAD_oxidored    FAD dependent oxidoreductase
      0.022   13.6   0.1      0.033   13.0   0.1    1.3  1  Trp_halogenase  Tryptophan halogenase
      0.033   13.2   2.7       0.17   10.9   0.9    2.1  2  Lycopene_cycl   Lycopene cyclase protein
      0.062   12.6   0.5        0.1   11.9   0.5    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.064   12.3   1.7        0.1   11.7   1.7    1.3  1  GIDA            Glucose inhibited division protein A
      0.066   13.2   0.2       0.13   12.3   0.2    1.4  1  NAD_binding_9   FAD-NAD(P)-binding
       0.19   11.6   0.0       0.33   10.8   0.0    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.7   0.2   6.3e-82   6.7e-79       1     348 [.      14     383 ..      14     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 265.7 bits;  conditional E-value: 6.3e-82
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.....CCCCCEEEEEHH CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne.....lsdtpkaradle 91 
                    ++dVlIVGaGpaG+m a+ L  aGv v++v+kr + +  ++adgl++rt+e+l++ Gl+d++ +eg   ++ + a+y++     l++++ + a   
     CDO68385.1  14 YVDVLIVGAGPAGVMCANALVHAGVTVRIVDKRLEGISAGQADGLQPRTLEILQSYGLADQLFNEG--AHVHRVANYEPtpdggLKRIRLSAASTA 107
                    589***************************************************************..6667788888855666555544444444 PP

                    CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEE.........EECCEECCCCCCCEEEECCTTEE..EEEEEEEEEE--GTT-HHHHHHTGGE CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerglqvrfkte.........vesleqdeegvtaevrdketgee..etvrakYlvGaDGgrStvrktlgief 176
                     +++++    ++q ++e i +++ +++gl v+++t            +le+ ++ v+++v++k  g +  e v+ak++ G DG++S+vrk+lgi  
     CDO68385.1 108 PNARWTFGVGMSQGRVEEIFLASMQKKGLAVERATVptslkmsgqADGLEDPGSYVNTVVLQKVGGHNatEVVHAKFVLGSDGAHSWVRKALGIGA 203
                    5577777778888888888888888888888888876666666668888999999******99888764477************************ PP

                    EEEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS......CCCHHHHHHHHHHHHHHTTSSCEE... CS
  FAD_binding_3 177 egeetvyeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer......sekfteeevkarlreivgektldv... 263
                    eg++t   +gv+d+l+d+d++di++  ++++s+e +    iP+e+ l+r yv    + e+ +       +++ + e+v a++r+++ +++++v   
     CDO68385.1 204 EGTMTNSVWGVVDLLPDTDMPDIRNL-TYVHSSEGTL-FTIPRERDLVRLYVPQANDSEVIDPatgradKNRSSAEKVLAQARKLIYPYRMEVkdn 297
                    ***********************998.9999999886.788999988888887766655433323335577888999************9998667 PP

                    EEEEEEEEEEEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 264 eieevsawtvaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    +i++ +++ v+qrva++y+   r ++aGDA+H+h+P++GqG+N a+ D++nLawkLa vlkG+Ak  lL tYe+er+++a+++++f
     CDO68385.1 298 QIDWWTIYIVGQRVADRYSVHdRALIAGDACHTHSPKAGQGMNAALGDSHNLAWKLAYVLKGWAKMLLLRTYESERQKFARDLIEF 383
                    89****************9655*************************************************************998 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.7   1.8e+03      91     148 ..     248     310 ..     226     321 .. 0.61
   2 !  107.3   0.0   7.8e-34   8.2e-31       1     166 []     419     573 ..     419     573 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
  Phe_hydrox_dim  91 flsrftpadadvdsvievllihaaprke...ieledlPevlrpf...deklgldyekvyvddes 148
                     +++ + p+ a+ ++vi+ ++  a ++++     l++  +++ p+    +++++d++++y+  ++
      CDO68385.1 248 LVRLYVPQ-ANDSEVIDPATGRADKNRSsaeKVLAQARKLIYPYrmeVKDNQIDWWTIYIVGQR 310
                     55666664.5667777777776665333222223344444444400045666799999876655 PP

  == domain 2  score: 107.3 bits;  conditional E-value: 7.8e-34
  Phe_hydrox_dim   1 FtsGvgveYqpsllvaevkskqnlatglrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeqksrlsaladalsskesflsrf 95 
                     FtsG+g++Y ps++v++  + q+ a++l +G+r+ ++  ++ aD++pv+++d +p+d rf++lvf gd++ + + +rl++  +a +++esflsr+
      CDO68385.1 419 FTSGIGIRYSPSTIVNP--QYQTSASNLIVGERMIPQMFICAADGRPVEIHDMLPADSRFKLLVFGGDIAVPGDLERLREATSATERPESFLSRY 511
                     9*************976..9999*************************************************99999999999998888****** PP

  Phe_hydrox_dim  96 tpadadvdsvievllihaaprkeieledlPevlrpfdeklgldyekvyvddes.yhe.dgaaYekyGidkkrG 166
                      +a     +v++vl   + ++++i  +d+P+++        ++++k ++dd + + + +g  YekyGid++ G
      CDO68385.1 512 GRA----GAVFDVLYFSSGKQANITYADFPQFYG-------THWKKAFLDDVElSGRfGGGGYEKYGIDPHVG 573
                     886....89************************9.......578*********65554477********9976 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.9   7.2e-08   7.6e-05       2      32 ..      16      46 ..      15      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.2e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv+++G+G+AG+m+A ++ ++g  V +++k 
   CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGVTVRIVDKR 46
                 89***************************85 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   5.5e-07   0.00058       1      28 [.      19      46 ..      19      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.5e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   IvGaG +G  +A +L  ag+ v +++kr
     CDO68385.1 19 IVGAGPAGVMCANALVHAGVTVRIVDKR 46
                   9**************************8 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   4.5e-07   0.00048       2      31 ..      16      47 ..      15      88 .. 0.83
   2 ?   -4.0   0.0       6.5   6.9e+03     185     214 ..     123     152 ..     119     178 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.5e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE..T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve..l 31
                 dv+++G+GpAG+ +a  l +ag+ v +v+  l
   CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGVTVRIVDkrL 47
                 89**************************7554 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.5
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgnge 214
                  ++++  + ++k+G +v   t+++ ++  g+
   CDO68385.1 123 VEEIFLASMQKKGLAVERATVPTSLKMSGQ 152
                  677788889999999998777776655554 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7     2e-06    0.0021       1      30 [.      18      46 ..      18      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +I+GaGPaG+ +a +l +ag+ ++ i++k 
   CDO68385.1 18 LIVGAGPAGVMCANALVHAGV-TVRIVDKR 46
                 6********************.799**996 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.7   3.1e-06    0.0032       1      32 [.      16      47 ..      16      68 .. 0.90
   2 ?    4.6   0.4     0.013        14     109     223 ..      82     211 ..      59     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   Dv+++G+G AG ++A ++ +aG +v +v+k  
     CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGVTVRIVDKRL 47
                   9****************************965 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
                    S....SB-EEE-TT-SSTEEEE-.STT-......HHH.....HHHHHHHHHHHTCTEEEEESEEEEEEEECTT.........EEEEEEEEETTTTC CS
  FAD_binding_2 109 g....pvdvrelGglsatartlhdaadarretlvtgh.....allarlvesarkagvdfqerteadeLivedg.........rvtGavvenpesgr 186
                          +  ++ Ggl++  r  + a++a++ +++ g      ++ + +++s++k g+ +   t  ++L + ++          v+++v+++  + +
     CDO68385.1  82 VhrvaNYEPTPDGGLKRI-RLSA-ASTAPNARWTFGVgmsqgRVEEIFLASMQKKGLAVERATVPTSLKMSGQadgledpgsYVNTVVLQKVGGHN 175
                    033447888999999999.3333.33333344444440001146678888888888999999999999886445567788889*******888888 PP

                    EEEEEESEEEE-----GG..........GSSSBSSGT CS
  FAD_binding_2 187 evrirakavvlatgGfgrallkellgaaaeaettnap 223
                     ++++  + vl + G++ +++++ lg +ae  +tn +
     CDO68385.1 176 ATEVVHAKFVLGSDGAH-SWVRKALGIGAEGTMTNSV 211
                    88888889999999999.7************999976 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   4.4e-06    0.0047      18      51 ..      15      47 ..       2      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.4e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersv 51
                 Dv+ivGaG++G+ +a  l ++ ++ v i+++++
  CDO68385.1 15 VDVLIVGAGPAGVMCANALVHA-GVTVRIVDKRL 47
                5********************9.*******9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.2e-05     0.013       1      38 [.      16      52 ..      16      96 .. 0.82
   2 ?   -2.0   0.0         2   2.1e+03     246     298 ..     232     282 ..     149     303 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSg 38
                dv+i+G+G +G+ +A +L  +g  V +++k+  +  g S 
  CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGvtVRIVDKR--LE-GISA 52
                8*****************999*9999***99..33.4444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2
                 EEETTTTEEEEEETTSEEEE.EESSEEETTCSSTSCSHHHHHHHHHHHHHHSGG CS
         DAO 246 tdddgrgvyvtprkdgrvlv.GgtadeesgdddpevdeedidellealrklfPq 298
                  +  ++ ++ +pr+ + v++  + a    + ++ ++   ++d+ +++++k++ q
  CDO68385.1 232 VHSSEGTLFTIPRERDLVRLyVPQA---NDSEVIDPATGRADKNRSSAEKVLAQ 282
                 4555566677777767555433332...22222344444444444444444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.5   3.6e-05     0.038       2      31 ..      17      46 ..      16      56 .. 0.93
   2 ?   -0.5   0.0       1.8   1.9e+03      42      70 ..     123     151 ..     117     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.6e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v++vG+G  g+++A+al + g  V +v+ +
  CDO68385.1 17 VLIVGAGPAGVMCANALVHAGVTVRIVDKR 46
                89************************9865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox  42 askilqeklekngievllntkveeiegse 70 
                 +++i+  +++k+g  v   t++++++ s+
  CDO68385.1 123 VEEIFLASMQKKGLAVERATVPTSLKMSG 151
                 67889999*************99999444 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   3.2   1.5e-05     0.016       1      31 [.      16      46 ..      16     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  Dv++vG+gpaGv++A a   aG +v +v++r
    CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGVTVRIVDKR 46
                  9***************************987 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.2e-05     0.033       1      61 [.      16      74 ..      16      89 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E..E--THHHHTHHHHT--HH CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe..atipsirkllrlLgidee 61
                    +++ivG+G+aG + A+al +a+   ++v +v++  +  +  G+  ++ p + ++l++ g+ ++
      CDO68385.1 16 DVLIVGAGPAGVMCANALVHAG---VTVRIVDKR-LEGISAGQadGLQPRTLEILQSYGLADQ 74
                    699******************9...788888764.3344444422556666666666666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   0.00016      0.17       1      30 [.      16      43 ..      16      51 .. 0.83
   2 ?    1.9   0.0     0.089        94     313     373 ..     351     411 ..     311     417 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvli 30
                   Dv+++GaGpAg+  A+ l   ++g+ v ++
     CDO68385.1 16 DVLIVGAGPAGVMCANAL--VHAGVTVRIV 43
                   9*****************..5556666555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.089
  Lycopene_cycl 313 krqreffrllglalllkldiegrrrfldaFfrlpkellqrFlasrlsladkllialslfvi 373
                    ++ + +++    +lll+   ++r++f++   + +k+  + F+a++ls++d    + +lf+ 
     CDO68385.1 351 WKLAYVLKGWAKMLLLRTYESERQKFARDLIEFDKQWSKLFMANSLSSEDRDDASKKLFIE 411
                    555666666778999999999***************************9986666666655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   9.8e-05       0.1      30      75 ..      16      63 ..       7      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.8e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH..TTTCEC CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles..lgakfv 75
                  vl++G+G aG+  +++ +  g +V+++D+r + +   ++  l+ +++
   CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGVTVRIVDKRLEGISAGQAdgLQPRTL 63
                 69*****************************98766544434555555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.7   9.7e-05       0.1       1      35 [.      16      50 ..      16      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.7e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldti 35
                dv ++G+G AG+ +A a+  +G+ v ++ ++l+ i
  CDO68385.1 16 DVLIVGAGPAGVMCANALVHAGVTVRIVDKRLEGI 50
                799***********************998777655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00012      0.13       2      36 ..      19      48 ..      18      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   ivGaGp+G++++++L++       +++ ++d++  
     CDO68385.1 19 IVGAGPAGVMCANALVHA-----GVTVRIVDKRLE 48
                   9***************99.....599999998655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00032      0.33       2      39 ..      17      54 ..      16      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekal 39
                v ++GaG  G   a+++++ag++V++vd + e + +++
  CDO68385.1 17 VLIVGAGPAGVMCANALVHAGVTVRIVDKRLEGISAGQ 54
                779*************************9877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 3740.62
//
Query:       CDO68386.1  [L=877]
Description: hypothetical protein BN946_scf184815.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-20   73.2   9.7    2.3e-20   73.2   9.7    3.2  3  ADIP          Afadin- and alpha -actinin-Binding
     0.0017   17.5  11.3     0.0017   17.5  11.3    2.3  2  CCDC144C      CCDC144C protein coiled-coil region
  ------ inclusion threshold ------
        1.7    9.1   5.5        1.6    9.2   0.7    2.6  2  DUF2533       Protein of unknown function (DUF2533)
          2    8.4   4.6        1.1    9.2   0.2    2.7  3  Erp_C         Erp protein C-terminus
        3.3    6.5  33.5       0.22   10.4  13.9    2.1  2  DUF812        Protein of unknown function (DUF812)
        5.4    5.5   5.8         11    4.4   5.8    1.5  1  DUF3138       Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   9.7   7.6e-24   2.3e-20       3     147 ..      39     181 ..      37     185 .. 0.94
   2 !    7.2   3.4    0.0017         5      63     119 ..     334     390 ..     327     414 .. 0.87
   3 ?   -1.1   1.2      0.58   1.7e+03      53      89 ..     401     437 ..     391     452 .. 0.63

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 7.6e-24
        ADIP   3 aikyINstLlsrGylr.skllfdtatekveeniaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerql 100
                 +++yINs+L+++G++  ++l  d      +e+ +++i+++ s+l +r  d+   e l++++r+l+++ +rl+s ++  +++ +  ere+  +++++ + 
  CDO68386.1  39 SLQYINSQLIAHGFTHgEGLSLDGL---AKEDADRVIKCVLSMLSQRIDDMSRTEDLTTKLRTLSYDHQRLTSMYKAETEKAANAEREMNMHKSRLSTV 134
                 689***********98244555555...99********************************************************************* PP

        ADIP 101 ekklktleqklknekeelqrlknalqqiktqyahelkkkdreiekLk 147
                 +++l+ +e+++k+++ elqr++++l +++++ + e+kk ++e e++ 
  CDO68386.1 135 TRSLQLTESAHKQTTAELQRTRTTLTALRAAHQTEIKKIEKEKERMV 181
                 ***************************************99988875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0017
        ADIP  63 rkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelq 119
                 +k + + erlq+ i++l   le+ ++++a++ a+ ++l  + +++++++   + +++
  CDO68386.1 334 SKESVDVERLQAVIDKLRSDLEEAQKQAAASAAQVQELFDRFAEEQAAAAAHAGDMS 390
                 5667899**************************************999988887775 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.58
        ADIP  53 eqreslnetirkleaeierlqskierlktqleqlere 89 
                 e+r+  +++ ++le e ++ + +  rl ++ ++le e
  CDO68386.1 401 EERQRIEARFKELEEERQKFTEAAVRLGKEKAALEAE 437
                 4566667777777777777777666666555555444 PP

>> CCDC144C  CCDC144C protein coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  11.3   5.7e-07    0.0017      62     176 ..      93     210 ..      65     216 .. 0.90
   2 ?    3.1   4.6     0.014        42     188     303 ..     319     433 ..     288     435 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.7e-07
    CCDC144C  62 ngqLnvlkaentmlnskLekekqnkerleaevesyrsrLaaAiqdheqsqtskrdlelalqrerdewlrlqdklnfdvsnlkdknevLsq...qLskae 157
                 + +L++l  + ++l+s  + e ++    e+e++ ++srL+++++ ++  + +++++  +lqr+r     l+  ++ ++ ++ ++ e + +   +Ls ++
  CDO68386.1  93 TTKLRTLSYDHQRLTSMYKAETEKAANAEREMNMHKSRLSTVTRSLQLTESAHKQTTAELQRTRTTLTALRAAHQTEIKKIEKEKERMVErwcKLSDVQ 191
                 57899***************************************************************************99999988875668***** PP

    CCDC144C 158 skansLenelhetrdaLre 176
                  k+ sL   l ++++++ e
  CDO68386.1 192 LKIGSLRSGLICANQEVVE 210
                 ******9999988887765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.014
    CCDC144C 188 lsqaqcqikeleqmyqneeekvnkyiakqesleerlaqlqsenmlLrqqLedaqnkadakekvvidiqdqfqdivkkLqa.esekqvllleernkeLin 285
                  sq+++ ik    m  +e   v++  a  + l+  l ++q++++    q+++  ++   ++ +      ++   v+ + a  ++++++ +e r keL +
  CDO68386.1 319 CSQKTSSIKHAGDMSSKESVDVERLQAVIDKLRSDLEEAQKQAAASAAQVQELFDRFAEEQAAAAAHAGDM--SVDSMTApARDEERQRIEARFKELEE 415
                 57888899999999999999999999999999999999999999999999998888776664443333333..34444331556677779********* PP

    CCDC144C 286 ecnhlkerlyqyekekae 303
                 e ++  e  +++ keka 
  CDO68386.1 416 ERQKFTEAAVRLGKEKAA 433
                 ***************985 PP

>> DUF2533  Protein of unknown function (DUF2533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.15   4.3e+02      14      39 ..     163     188 ..     142     195 .. 0.69
   2 ?    9.2   0.7   0.00055       1.6      13      49 ..     402     438 ..     389     446 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.15
     DUF2533  14 qnaalkqfleLeqkREaaIeeavelc 39 
                 + a+++++ ++e+++E+++e+ ++l+
  CDO68386.1 163 RAAHQTEIKKIEKEKERMVERWCKLS 188
                 34577788899999999999888766 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00055
     DUF2533  13 kqnaalkqfleLeqkREaaIeeavelckkgkpfsvek 49 
                 +++++  +f eLe++R ++ e+av+l k+  ++  e+
  CDO68386.1 402 ERQRIEARFKELEEERQKFTEAAVRLGKEKAALEAER 438
                 44555678******************99988776665 PP

>> Erp_C  Erp protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.67     2e+03      70     117 ..     152     201 ..     136     214 .. 0.68
   2 ?    9.2   0.2   0.00038       1.1      89     123 ..     326     360 ..     289     373 .. 0.72
   3 ?   -1.6   0.0      0.82   2.5e+03      29      84 ..     390     444 ..     365     453 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.67
       Erp_C  70 lsdtrdel...rtklnegnkayivlekepklkenvnvseikedleklkskl 117
                 l  tr  l   r+  + +  + i +eke  +    ++s+++  +  l+s+l
  CDO68386.1 152 LQRTRTTLtalRAAHQTE-IKKIEKEKERMVERWCKLSDVQLKIGSLRSGL 201
                 555554440004443333.34467778888888999999999999999988 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00038
       Erp_C  89 ivlekepklkenvnvseikedleklkskleevkky 123
                 i +  + + ke+v+v  ++  ++kl+s+lee +k 
  CDO68386.1 326 IKHAGDMSSKESVDVERLQAVIDKLRSDLEEAQKQ 360
                 344447788**********************9875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.82
       Erp_C  29 vidkitgpvyddftdgnkaiyktwgdlede...edeglgkllkelsdtrdelrtklneg 84 
                  +d +t p  d+     + i   +++le+e     e   +l ke + + ++ r kl e+
  CDO68386.1 390 SVDSMTAPARDEE---RQRIEARFKELEEErqkFTEAAVRLGKEKA-ALEAERLKLIEE 444
                 4677777776654...344555555555552113455555555543.334445555555 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  12.2     0.034     1e+02     297     388 ..      89     181 ..      27     213 .. 0.69
   2 ?   10.4  13.9   7.2e-05      0.22     242     437 ..     241     445 ..     204     457 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.034
      DUF812 297 kgsrfthaeklqftkeelakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevkl.kkktl 388
                  +  +t+  +l++ +++l++  + e e  ++ e+e++  +++++++ ++++  e+  k+ +++++++  +l+++++  +++ k++++ k++++
  CDO68386.1  89 TEDLTTKLRTLSYDHQRLTSMYKAETEKAANAEREMNMHKSRLSTVTRSLQLTESAHKQTTAELQRTRTTLTALRAAHQTEIKKIEKeKERMV 181
                 222233333334444455566677777777888888888999999999999999999999999999999998888877766666654155555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.2e-05
      DUF812 242 kkrkkeklqkrlaeqlrkaalkseeaessasksksdlaellsefseksetdslktkgsrfthaeklqftke.....................elakkae 319
                 ++rk ++l+  +a++lr+ + + ++a+  +s ++ +l ++   f + +++      g++ft                               +++++ +
  CDO68386.1 241 QNRKLRGLLLSAANELRRVLHAARTAHDPDSAEEPSLFTSSTLFPSPHAEA----AGETFTA--------LlrslrdvvsqktetsspcrcsQKTSSIK 327
                 334445555555555555555555555444444444444444443322222....2333333........13333333444455555555543338899 PP

      DUF812 320 teeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakq 418
                 +  ++  k++ ++e lq  i++l+s++ee +++ ++ +++++++ +   ee++  + ++ ++ +  +t+   ++  + ie+  +++e+ +q+  e a +
  CDO68386.1 328 HAGDMSSKESVDVERLQAVIDKLRSDLEEAQKQAAASAAQVQELFDRFAEEQAAAAAHAGDMSVDSMTAPARDEERQRIEARFKELEEERQKFTEAAVR 426
                 99*******************************************************************999887777776666667777777776666 PP

      DUF812 419 WekhRvplieeyrelkesk 437
                   k +++l +e  +l e+k
  CDO68386.1 427 LGKEKAALEAERLKLIEEK 445
                 6666666644433333222 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.8    0.0038        11      20      91 ..     333     407 ..     321     425 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0038
     DUF3138  20 aaatadrikalkaqltalqrqvkelraalaaakaaaGg...kissqkaaaaaaaaaeaaaalteddvaqlkeqia 91 
                  ++++ ++++l+a +++l+  ++e ++  aa+ a       + +  +aaaaa a   +  ++t  +  + +++i 
  CDO68386.1 333 SSKESVDVERLQAVIDKLRSDLEEAQKQAAASAAQVQElfdRFAEEQAAAAAHAGDMSVDSMTAPARDEERQRIE 407
                 4455788999*********99999988777666655541113444444444444456677899988888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1795  (0.100117); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.56
# Mc/sec: 4727.66
//
Query:       CDO68387.1  [L=1005]
Description: hypothetical protein BN946_scf184815.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-44  151.7   0.0    4.4e-42  143.6   0.0    2.3  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    2.9e-28   98.6   0.2    5.9e-28   97.6   0.2    1.5  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
    2.1e-20   72.9   0.0    3.9e-20   72.0   0.0    1.5  1  FAD_binding_6   Oxidoreductase FAD-binding domain
    6.2e-13   49.4   0.0    1.6e-12   48.1   0.0    1.7  1  NAD_binding_1   Oxidoreductase NAD-binding domain
    6.9e-07   29.3   0.0    1.6e-06   28.2   0.0    1.6  1  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.29   11.4   0.1    1.6  1  2C_adapt        2-cysteine adaptor domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   1.5e-45   4.4e-42       1     172 []     245     447 ..     245     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 1.5e-45
                     SS----.GCCC-EEEE....ESTCSSEEEEEHHHHHH..C-EEEEEEEEE-TT....................TTHHHHCHH.--SS----TTSE CS
  Oxidored_molyb   1 hgavpkvdpekwrlev....dglvekplslslddLka..lpavevtatlqCag....................nrrkelnkk.kvkglqwgagav 68 
                     hgavp++++e++++ +    + l++kp+++++d+L +  ++  e+++t+ C g                    +rr+e+n++ ++ g++w+a+ v
      CDO68387.1 245 HGAVPQLHWERHTVLMyadpSELMSKPREWTMDELASgaFDIIEIPVTIGCDGsgstyllyacllvsflnkheDRRREVNMVkRTVGFNWTASGV 339
                     899**999*****999666666899**********9888************99888888888888888866666788888446************ PP

                     EEEEEEEEEHHHHHHHTTB-...ETT..EEEEEEEEE-TCCTEEEEEEEHHHHC..TTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTE CS
  Oxidored_molyb  69 snaeWtGvrlrdvLekagvk...kpearhvvfegadeeleeskygasiplekal..eddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwl 158
                     s+a W+G+++rdvL ++g++   ++e  ++ fegade+ + ++y++sipl++a+  ++dv+LA+ mng+ L+pdhGyPlR+v+pg+vg+r++Kwl
      CDO68387.1 340 STALWRGIPVRDVLLACGLRevpDEEIWYLNFEGADEP-SMGRYATSIPLAHAMdpTNDVILAFGMNGRVLHPDHGYPLRVVIPGYVGGRQIKWL 433
                     *******************8666566799*******75.5**************6666************************************* PP

                     EEEEEESS---SHH CS
  Oxidored_molyb 159 krievsdeesegyw 172
                     kri++++e++++++
      CDO68387.1 434 KRIWITKEPNQSHY 447
                     **********9987 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.2     2e-31   5.9e-28       3     128 ..     477     593 ..     475     602 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 2e-31
                  ---S---EEEE-SS-SEEEE-S.......EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEEEEESS.. CS
  Mo-co_dimer   3 aiydlnvnsvicspeheekvklkea...eetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfweldvevsela 97 
                  a ++  ++s+ic+p+hee +++ ++   ++tyt++G+a++GgG ri+rve++ld+Gk+W+ +  +  + + r+++     ++++w fw  +v+++el 
   CDO68387.1 477 ACWEQTMQSIICRPAHEELINIPDEealQKTYTVQGFAFNGGGNRIERVELTLDGGKTWRWCFRRFLDTPMRHGS-----KFWAWLFWACEVKIQELV 569
                  6688899**************98877889**************************************99999876.....9***************** PP

                  .E.EEEEEEEETT--B--SHHH--TT----- CS
  Mo-co_dimer  98 kekeilvravDealnvqPeemiwnvlgmlnn 128
                   + ei+vra D++ + q e+++        n
   CDO68387.1 570 DAFEIIVRAQDNKKMYQSEHITC-------N 593
                  *************9999887653.......4 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.3e-23   3.9e-20       2      99 .]     775     889 ..     774     889 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.3e-23
                    EEEEEEEECCTTEEEEEEEESTTTS....-----TT-EEEEEECETTCCEEEEEE.BSST...TECCEEEEEEE--..........TT-HHHHHHH CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekq....klglpvGqhvflrlkikgeaviRsYtpisse...nekGelellvkvy..........pgGkmsqaLd 80 
                    +kl++++++s d r ++f+lp++++    +lglpvGqh+++ ++ k++av+RsYtp+      +e+G+++llvk+y           gG +s++Ld
     CDO68387.1 775 AKLIRRKDISADSRLYTFELPRNADgspgTLGLPVGQHMQIAVHFKDRAVLRSYTPVRPVlpeEEDGTFDLLVKTYlpdaegdvpfLGGTISNYLD 870
                    6899*****************987544448*************************998654448******************************** PP

                    CS-TT-EEEEEEEE-SEEC CS
  FAD_binding_6  81 elkigdtleikGPlGkfeY 99 
                     +  g++++i+GP+G++ Y
     CDO68387.1 871 CMDEGEVIDIRGPCGTILY 889
                    ***************9876 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   5.2e-16   1.6e-12       1      72 [.     929    1000 ..     929    1004 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 5.2e-16
                     EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSS CS
  NAD_binding_1    1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweg 72  
                     +iagG+G++P +++++ail +++d t v+lv  n t ed+  re le +a+k+  r+k+++v+s  ++gw+ 
     CDO68387.1  929 LIAGGSGVTPHWQLIHAILSDPSDATLVTLVDSNTTVEDVWQREALEMYAAKHATRFKLWHVLSSSPEGWQV 1000
                     7*********************************************************************64 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.3e-10   1.6e-06       1      35 [.     653     687 ..     653     694 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.3e-10
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTC CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGg 35 
                 +lee++kh++ +d+w++++ kVYD+++ ls hpG 
  CDO68387.1 653 SLEEIAKHDKMDDAWIILDSKVYDITSVLSWHPGK 687
                 589******************************95 PP

>> 2C_adapt  2-cysteine adaptor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.6e-05      0.29       1      21 [.     591     614 ..     591     616 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.6e-05
    2C_adapt   1 kCeefer...nptvNPlTgRkikp 21 
                 +C+ ++r   n +v+P+Tg +i +
  CDO68387.1 591 TCNSWYRvrpNVRVSPVTGSRIVR 614
                 5*********************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 6260.99
//
Query:       CDO68388.1  [L=1122]
Description: hypothetical protein BN946_scf184815.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-23   81.5   0.0    2.3e-22   79.6   0.0    2.0  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
      1e-17   64.3   0.0    3.4e-10   40.1   0.0    2.5  2  Response_reg  Response regulator receiver domain
     0.0033   17.4   0.0     0.0096   15.9   0.0    1.9  1  HisKA         His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   3.8e-26   2.3e-22       1     110 [.     572     771 ..     572     773 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 3.8e-26
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEE...................................................................... CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageiev...................................................................... 29 
                 gde+rLrqii nl +Na kf++ +g++++                                                                      
  CDO68388.1 572 GDETRLRQIITNLASNACKFTPAGGKLTIitklvipappgeeehedededeevghgnggggdrphdpekggeylspsstprgppngsgngngnaadgrp 670
                 79******************88******9********************************************************************** PP

                 ...........EEEEEE.......TEEEEEEEESSSSSTTHHHT..GTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEE CS
   HATPase_c  30 ...........eikase.......ddlvisveDnGiGipkedlk..klfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftft 107
                             +++ +         ++i+v+D+G+Gi ++d+   klf +f q ++++ +gg+gtGlGl++v+++v+l gG++ v+s+ g+G+tf+++
  CDO68388.1 671 qlsathltqhnVLHS-KpapplewIVVRIEVKDTGCGIRPKDMVqsKLFSAFNQtEQGRLQGGKGTGLGLALVRQIVKLSGGRLGVQSKVGEGSTFWVE 768
                 888776655543332.24566756788889**********999999*********999***************************************** PP

                 EES CS
   HATPase_c 108 lpl 110
                 lpl
  CDO68388.1 769 LPL 771
                 *98 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.9e-08   0.00018       1      39 [.     956     993 ..     956    1002 .. 0.92
   2 !   40.1   0.0   5.7e-14   3.4e-10      40     111 ..    1026    1097 ..    1009    1098 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.9e-08
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealell 39 
                   vl+vdDd l r+l++++l++ g+ +v++ae+g+ alel+
    CDO68388.1 956 VLVVDDDLLTRKLMSRMLTRLGC-RVTTAENGEVALELI 993
                   8**********************.*************98 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 5.7e-14
                    HHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg   40 keekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddflsKpfdpeeLlkal 111 
                    +e ++ +++lD +mp m+Gle+++++r+  ++  v+ +t+++  +d +e+l+ag+d +l+Kp+ ++ L+++l
    CDO68388.1 1026 EECRYAVVFLDNQMPVMSGLEAVSKLRQMGRKDFVVGVTGNALLSDQQEYLDAGVDHVLTKPVLEKSLKSML 1097
                    566799*********************************************************999998776 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-06    0.0096       2      67 .]     429     496 ..     428     496 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHH....HHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHE....LrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 ++r++++v H+     r PL++ l++++ ++ +      +   ++ +e +   ++++++d+Ld+ r+++g
  CDO68388.1 429 KRRLTSYVFHDkclfVRVPLNTALLAVQNMQAS--GAVTQDIEFKALEGSLSMMSKVLNDVLDFNRMDSG 496
                 666666666666666799**************5..5688888**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 7230.87
//
Query:       CDO68389.1  [L=615]
Description: hypothetical protein BN946_scf184815.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-45  153.9   0.3      4e-16   59.2   0.0    3.2  3  FAD_binding_3   FAD binding domain
    1.2e-27   96.9   0.0    2.6e-27   95.9   0.0    1.5  1  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    3.7e-07   29.2   0.5    5.3e-07   28.7   0.5    1.1  1  HI0933_like     HI0933-like protein
    1.3e-06   27.7   0.2    2.1e-06   27.1   0.2    1.2  1  FAD_binding_2   FAD binding domain
      3e-05   24.2   0.1    9.9e-05   22.5   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    8.5e-05   22.0   0.3    0.00012   21.4   0.3    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    8.6e-05   21.9   0.0    0.00012   21.4   0.0    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0004   19.7   0.1    0.00071   18.9   0.1    1.4  1  Thi4            Thi4 family
     0.0006   19.5   0.0     0.0013   18.4   0.0    1.5  1  DAO             FAD dependent oxidoreductase
    0.00093   18.3   0.7     0.0015   17.7   0.7    1.3  1  Lycopene_cycl   Lycopene cyclase protein
     0.0028   16.8   0.1     0.0039   16.3   0.1    1.1  1  GIDA            Glucose inhibited division protein A
     0.0034   17.9   0.1       0.01   16.4   0.0    1.8  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.022   14.1   0.4      0.034   13.5   0.4    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.032   14.1   0.0      0.062   13.2   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.043   13.8   0.2      0.096   12.7   0.1    1.6  2  NAD_binding_9   FAD-NAD(P)-binding
      0.059   13.6   0.0       0.28   11.4   0.0    2.0  2  TrkA_N          TrkA-N domain
      0.073   11.9   0.1       0.11   11.4   0.1    1.2  1  Trp_halogenase  Tryptophan halogenase
      0.087   12.1   0.0       0.14   11.4   0.0    1.2  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.11   12.1   0.0        0.2   11.2   0.0    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.13   12.7   0.0       0.29   11.6   0.0    1.6  1  XdhC_C          XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.3   8.5e-12   7.7e-09       1      34 [.       5      38 ..       5      44 .. 0.94
   2 !   59.2   0.0   4.5e-19     4e-16     137     269 ..     110     247 ..      39     250 .. 0.74
   3 !   56.3   0.0   3.3e-18     3e-15     301     348 ..     251     298 ..     247     299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 8.5e-12
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   ++dVlI+GaGpaGlm a+ L+ aG+ v++++k  
     CDO68389.1  5 KVDVLIIGAGPAGLMCANALAHAGIPVRVIDKSP 38
                   58*****************************975 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 4.5e-19
                    CCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEEC CS
  FAD_binding_3 137 gvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvea 232
                     v+ +v+  + + +e +rak++ G DG++S+vrk+++i++eg +++ ++gv+d+++d+d +d+++   +i+s+e +   +iP+e +l r yvq+  
     CDO68389.1 110 PVKVVVQHLDRNDIEVIRAKFVLGSDGAHSWVRKAMDIKMEGDMSDFIWGVVDIIPDTDYPDTRNL-AVIHSPEGS-ALLIPREGGLLRLYVQLAD 203
                    3555555666677899*********************************************98887.666666666.59******99999999876 PP

                    CE-GGGS.....CCCHHHHHHHHHHHHHHTTSSCEE..EEEEEE CS
  FAD_binding_3 233 raekeer.....sekfteeevkarlreivgektldv..eieevs 269
                     + ++ +     + ++++++v + +++i  ++++d   ei++ +
     CDO68389.1 204 ADVIDPQtgrldKARTSPQKVLEMAKRILRPYRMDPigEIRWWT 247
                    66555543446566777888888888888888887655666665 PP

  == domain 3  score: 56.3 bits;  conditional E-value: 3.3e-18
                    SHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 301 GqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    GqG+N ++ D++nLawkLa vl+G+A+ +lL+tYe err++a ++++f
     CDO68389.1 251 GQGMNASMADTHNLAWKLAYVLRGWADISLLKTYEFERRKFAVDLINF 298
                    9*****************************************999987 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   2.9e-30   2.6e-27      27     164 ..     338     468 ..     310     470 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 2.9e-30
  Phe_hydrox_dim  27 glrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeqksrlsaladalsskesflsrftpadadvdsvievllihaaprkeiel 121
                     +l +G+r++++  ++ +Da+pv+++d +p+d rf++lvf+gd+ d+e ++r+ +l+++l++++sfl+r+ +     ++v++v+ i a++++++++
      CDO68389.1 338 NLIVGERMLPHVFICASDARPVNIHDMLPADTRFKVLVFVGDIVDEEVAERVGRLGEELAAPDSFLNRYGH--GGSSRVFDVICISASSKQDVDW 430
                     599********************************************************9999******77..577******************* PP

  Phe_hydrox_dim 122 edlPevlrpfdeklgldyekvyvddesyhe.d.gaaYekyGidkk 164
                     +d+P+vl        ++++kv +dde+ h  + g  + +yGi+++
      CDO68389.1 431 TDFPKVLS-------RHWSKVLLDDEDMHGrSgGGGFVAYGINPR 468
                     ********.......466*********88866577*******987 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.5     6e-10   5.3e-07       2      35 ..       7      40 ..       6      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 6e-10
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 dv++iG+G+AGlm+A ++a++g  V +++k +k 
   CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGIPVRVIDKSPKG 40
                 89****************************9885 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   2.3e-09   2.1e-06       1      33 [.       7      39 ..       7      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.3e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   Dv++iG+G AGL++A ++a+aG  v v++k ++
     CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGIPVRVIDKSPK 39
                   9*****************************997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.1e-07   9.9e-05       1      30 [.      10      39 ..      10      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   I+GaG +Gl +A +La ag+ v +++k+++
     CDO68389.1 10 IIGAGPAGLMCANALAHAGIPVRVIDKSPK 39
                   9**************************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   1.3e-07   0.00012       1      30 [.       9      37 ..       9      50 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 +IiGaGPaGl +a +l +ag+  + +++k 
   CDO68389.1  9 LIIGAGPAGLMCANALAHAGI-PVRVIDKS 37
                 6********************.89****97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.3e-07   0.00012       2      31 ..       7      38 ..       6     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE..T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve..l 31
                 dv++iG+GpAGl +a  la+ag+ v +++   
   CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGIPVRVIDksP 38
                 89**************************6441 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   7.9e-07   0.00071      17      50 ..       5      37 ..       1      44 [. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.9e-07
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers 50
                + Dv+i+GaG++GL +a  la++ ++ v ++++s
  CDO68389.1  5 KVDVLIIGAGPAGLMCANALAHA-GIPVRVIDKS 37
                67*********************.****999985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.4e-06    0.0013       1      31 [.       7      39 ..       7      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                dv+iiG+G +Gl +A +La +g  V +++k++ 
  CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGipVRVIDKSPK 39
                8*****************9999********954 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.7   1.6e-06    0.0015       1      35 [.       7      39 ..       7      43 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.6e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   Dv++iGaGpAgl  A+ l  a++g+ v +i+ sp+
     CDO68389.1  7 DVLIIGAGPAGLMCANAL--AHAGIPVRVIDKSPK 39
                   9*****************..9**********9996 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.3e-06    0.0039       1      30 [.       7      36 ..       7      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.3e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLith 30
                dv +iG+G AG+ +A a+a +G++v  i +
  CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGIPVRVIDK 36
                799**********************99933 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-05      0.01       2      33 ..       8      39 ..       7      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                v+++G+G  gl++A+ala+ g  V v++ s+k
  CDO68389.1  8 VLIIGAGPAGLMCANALAHAGIPVRVIDKSPK 39
                89*************************99886 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   3.8e-05     0.034       1      32 [.       7      38 ..       7      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.8e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  Dv+++G+gpaG+++A a a aG  v ++++++
    CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGIPVRVIDKSP 38
                  9**************************99987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.9e-05     0.062       2      33 ..       8      39 ..       7      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdisee 33
                v +iGaG  G   a+++a+ag++V+++d s++
  CDO68389.1  8 VLIIGAGPAGLMCANALAHAGIPVRVIDKSPK 39
                779*************************9876 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00011     0.096       2      37 ..      10      40 ..       9      49 .. 0.88
   2 ?   -3.4   0.0       9.7   8.7e+03       4      29 ..     333     362 ..     333     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   i+GaGp+Gl+++++L++       + + ++d+s+ g
     CDO68389.1 10 IIGAGPAGLMCANALAHA-----GIPVRVIDKSPKG 40
                   9**************988.....5999999999986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.7
  NAD_binding_9   4 GaGprGlavlerLlara....kkkspleit 29 
                    G G+r l v er+l +     ++++p++i+
     CDO68389.1 333 GIGVRNLIVGERMLPHVficaSDARPVNIH 362
                    899*********999988887777777776 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00031      0.28       1      36 [.       8      44 ..       8      54 .. 0.86
   2 ?   -1.2   0.0       2.6   2.4e+03      41      59 ..     372     390 ..     350     391 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00031
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHH.HHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeer.vee 36
                ++iiG+G  G   a+ L ++g++v vidk+++  +e+
  CDO68389.1  8 VLIIGAGPAGLMCANALAHAGIPVRVIDKSPKGgIER 44
                68*****************8888*******9754555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.6
                 TSEEEES-TTSHHHHHHTT CS
      TrkA_N  41 glevvvgdatdeevLeeag 59 
                 ++ v+vgd  deev e+ g
  CDO68389.1 372 KVLVFVGDIVDEEVAERVG 390
                 367999******9988765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00012      0.11       1      33 [.       7      36 ..       7      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlves 33
                    +++i+G+G+aG + A+ala+a+   + v ++++
      CDO68389.1  7 DVLIIGAGPAGLMCANALAHAG---IPVRVIDK 36
                    699*****************99...77777766 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.14      30      62 ..       7      39 ..       2      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                  vl+iG+G aGl  +++ +  g  V+v+D++p+
   CDO68389.1  7 DVLIIGAGPAGLMCANALAHAGIPVRVIDKSPK 39
                 79***************************9986 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023       0.2       3      34 ..       8      39 ..       6      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HH CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDidee 34
                    + +iG+G  Gl++a +la++g+ v ++D++ +
      CDO68389.1  8 VLIIGAGPAGLMCANALAHAGIPVRVIDKSPK 39
                    789*************************9865 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00032      0.29       1      45 [.       8      68 ..       8     149 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
                EEEE--STTHHHHHHHHHHHTEEEEEEES-G..GGG-GGG-TT-SE..............- CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpre..efatkerfpeade..............t 45
                ++i+Gag+ +  +a+ +a++g+ v v+d+ +   +++ +r+p+ ++               
  CDO68389.1  8 VLIIGAGPAGLMCANALAHAGIPVRVIDKSPkgGIERLRRMPAITApstarypftctlhqG 68
                68***************************99444556667775544665555554445441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4170.12
//
Query:       CDO68390.1  [L=431]
Description: hypothetical protein BN946_scf184815.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-71  239.0   0.0    1.2e-70  238.7   0.0    1.0  1  Paf1      Paf1


Domain annotation for each model (and alignments):
>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.0   6.7e-75   1.2e-70       1     363 [.       9     386 ..       9     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 238.7 bits;  conditional E-value: 6.7e-75
        Paf1   1 dliarirYsNnLPdppfdpKflkypfeperfveyk.sssLerelkheiltdadlGmpldLinidgyldgdeesn.......epvkLdpkDrkLLedeea 91 
                 dl+ r+rYsN+LP+pp++pK+l++p++p+r++ ++   ++++++++++ +d +lGmpldL + d +++++  +        + +kLdpkD+ LL d+ +
  CDO68390.1   9 DLLIRVRYSNPLPPPPCPPKLLDIPTDPKRYARPEfLDEIAASMPLPMVVDGELGMPLDLSQWDCLWEENGDDSelnpdpsRAPKLDPKDQFLLGDPAT 107
                 899****************************************************************9654443789***999************9976 PP

        Paf1  92 skasskrsk.......qhskkVswLRrTEYistefnrfgvsatdkqetklgknlkkkeqeedlyrdresqikaiektFeda.kkplkdlkHpskknlka 182
                 + a    ++        +   V+wLR+TEY+s e          ++++ l++ lk+ + +++    r++q++ ie++F+++ +++l  l+Hp+k++l+a
  CDO68390.1 108 TAAPFLGAStpgsstpLAMPHVAWLRKTEYLSRE---------GTSRASLSQDLKQ-AHDNTIDISRDAQLRDIEASFAAIeNSDLATLRHPTKPELTA 196
                 65433222246666677999**************.........578999******9.899999****************7625689999********** PP

        Paf1 183 VealpllPDfelwknpyaqvkfdgdpatdskekdlkeeeqkerlsqaiirpvmeeegeefvayflpteetlekrkr...dleeeideeedeeyefklaR 278
                 Vea +++PD e w+n y   +f + p ++          +  rl  a++rp me++g++f+ay+l++e++++  ++    + + +d  e+e   f ++R
  CDO68390.1 197 VEAFDIYPDAEIWANAYDLFRFSERPGDRPLDV------EDPRLDCAVLRP-MEADGDHFLAYYLTKEDEDAVEFKrnrLAHSPDDPPEEEPTLFHFVR 288
                 ****************************43333......379*********.***************999886665442333333333377999***** PP

        Paf1 279 eYnwkv.enkaskgyeenlllvfrd...........d..kkkavyYneletrveLrkrRkk..eeeeskkdklvvklrelneeelkarekresef.dpl 360
                 +Y++   e++ +   +  +llv++d           +  + k++yY+++e ++ L+k+R++  e++ +k+d + +++ ++++ee+++re + +e+ dp 
  CDO68390.1 289 DYETVKiEQEVP---N-EFLLVLDDggvqdenadqkQrsRPKGAYYKNIERKMLLKKKRVNtyESYGDKWDVIRLTHTPMSAEEAQEREDALAEVvDPH 383
                 ***988444444...3.499999999999998877515689********************9876779********************99888741344 PP

        Paf1 361 eee 363
                 ++ 
  CDO68390.1 384 YPL 386
                 333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2947.64
//
Query:       CDO68391.1  [L=410]
Description: hypothetical protein BN946_scf184815.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2657.93
//
Query:       CDO68392.1  [L=176]
Description: hypothetical protein BN946_scf184815.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1212.14
//
Query:       CDO68393.1  [L=927]
Description: hypothetical protein BN946_scf184815.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-12   45.5   0.1    8.3e-12   45.5   0.1    2.3  3  APH             Phosphotransferase enzyme family
      3e-10   39.8   1.7    7.8e-10   38.5   1.7    1.8  1  F-box-like      F-box-like
     0.0006   19.5   0.0        1.3    8.6   0.0    3.3  3  RIO1            RIO1 family
     0.0025   18.2   2.1        1.1    9.8   0.0    4.5  5  LRR_4           Leucine Rich repeats (2 copies)
     0.0033   17.0   0.1      0.013   15.1   0.0    2.0  3  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.019   14.9   4.2       0.25   11.2   0.8    3.1  2  F-box           F-box domain
      0.067   12.5   0.1       0.29   10.4   0.0    1.8  2  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.8   4.6e+03     113     170 ..      13      71 ..       7      72 .. 0.54
   2 ?   -3.7   0.1       3.5     9e+03     204     229 ..     588     614 ..     582     621 .. 0.75
   3 !   45.5   0.1   3.3e-15   8.3e-12      39     215 ..     693     896 ..     674     913 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
                 TTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC....HHHHHHHHHHHHHHHH--SSS-EEEE- CS
         APH 113 lpladflaqdlellrqlesatarllaselld....lleeleeqvlaalaallpgelptvllH 170
                 +++++fl+     l +l++a  +l++  +++     le+++e  l  ++al   + +++l+H
  CDO68393.1  13 DGMPSFLDEATLSLSDLDRA--ALRDVSWPQvqswALEKIRE-HLGDIRALKTIHNDASLVH 71 
                 55566666666666667777..66777777743344444444.3443433333367777777 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.5
                 HHHCCHHH.CSCHCCCHCHHHHHHHHC CS
         APH 204 Dlavllrs.wtseldpeflaallraye 229
                 D+a++l++ +t++++ ++++a  ++ +
  CDO68393.1 588 DVAMHLARhVTEWATVSLYEASDQFRL 614
                 999999554888888888887766665 PP

  == domain 3  score: 45.5 bits;  conditional E-value: 3.3e-15
                 HHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...........HHHHHHHHHHHHHHHHHHC....CHHCH.-STTTB-..... CS
         APH  39 revallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...........klsaaqlpellealgefla....alhqvdpaalpla..... 116
                 +e++ + +++++   pvPev+       ++g+   ++e+++g  l++           +++a  + e l+++ + l+    +l++++ ++ p +     
  CDO68393.1 693 EEAKAMIFIRAHTTiPVPEVYM---VFKHEGWIHIVMERIDGVALREaqkynsegrytPDNALTSTEGLRNILRQLRqiidELQDLGRRFPPNEphfgs 788
                 466666667766556******9...99************************999999855555555555555555552222444443332222244455 PP

                 .............SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 117 .............dflaqdlellrqlesatarllaselld..lleeleeqvlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                              d++ +  +   +++ +  ++l+ e++    +e+l++        l  +     + +vl HgDl p+N+lv+  d+r+++++D+e++
  CDO68393.1 789 wphgpyrnsyfagDMPITAFRTISDFHGYWLNRLDDEYKGteTYEDLRR--------LQSNsanrTVTPVLSHGDLAPRNILVK--DDRIVAIVDWETL 877
                 4444444444444444444444444444433333333333333333333........33335556689****************..9************ PP

                 EEEECCHHHHCCHHHCSCH CS
         APH 197 glgpplyDlavllrswtse 215
                 g+ p  ++++ + + ++s+
  CDO68393.1 878 GWYPDFWEIMGVHNELVSR 896
                 **99888887777445544 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   1.7   3.1e-13   7.8e-10       3      46 ..      72     116 ..      70     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3.1e-13
  F-box-like   3 rLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                  LP+E+L++IF    ++++ +r ++VCrrWr++al tp  W +lv
  CDO68393.1  72 CLPNELLSKIFTMAcSDRTAIRFCHVCRRWRSLALATPPYWANLV 116
                 6**********9877999***********************9986 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.12     3e+02      63     133 ..     559     632 ..     546     633 .. 0.68
   2 !    5.3   0.0     0.005        13      57     103 ..     693     743 ..     682     770 .. 0.76
   3 !    8.6   0.0    0.0005       1.3     124     149 ..     848     874 ..     810     876 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.12
                 HHHHHTT--S--EEEEETTEEEEE--E.ETTEEGGBHHHCG-..HHHHHHHH.HHHHHHHHHHHHTSTEEESS-S CS
        RIO1  63 krleeagvpvPkpielkrhvlvmefig.edgvaapklkdvee..eeeaeely.eevleemrklykeaglvHaDLS 133
                 +r+  +  p+P+p ++++ v +m   + +d+va+   ++v+e  +  + e+  +  le   +  +  + +H+D S
  CDO68393.1 559 SRITCR-CPAPHPKDIRDGVTLMVHSDdADDVAMHLARHVTEwaTVSLYEASdQFRLEPTSRSATPFETIHGDAS 632
                 555555.789999**********9999667777777777774333333333303345566666677888888866 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHTT.--S--EEEEETT....EEEEE--EETTEEGGBHHHCG.- CS
        RIO1  57 kEfrnLkrleeag.vpvPkpielkrh....vlvmefigedgvaapklkdve.e 103
                  E +++  ++++  +pvP+++ + +h     +vme i+  gva+ + ++++ e
  CDO68393.1 693 EEAKAMIFIRAHTtIPVPEVYMVFKHegwiHIVMERID--GVALREAQKYNsE 743
                 566677666665559**********9666669******..9999999988833 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0005
                 TSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 124 eaglvHaDLSeyNvlvded.kvviIDv 149
                 +  l H+DL   N+lv++d  v i+D+
  CDO68393.1 848 TPVLSHGDLAPRNILVKDDrIVAIVDW 874
                 56688**************55668888 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00042       1.1       1      30 [.     205     239 ..     204     246 .. 0.85
   2 ?    1.0   0.0      0.25   6.4e+02      19      31 ..     271     284 ..     252     292 .. 0.76
   3 ?    2.4   0.1     0.087   2.2e+02       1      30 [.     275     310 ..     275     314 .. 0.71
   4 ?    0.4   0.0      0.37   9.5e+02      19      33 ..     466     479 ..     461     487 .. 0.75
   5 ?   -1.6   0.1       1.6   4.1e+03      10      28 ..     749     768 ..     749     775 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00042
                 SS--EEE--SS---E-S-.HH...H.-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNqltdipl.le...k.lpnLkeLdL 30 
                 pnL  L+L+++ lt+    ++   + lpnL+eL++
  CDO68393.1 205 PNLGRLNLAGCYLTSARDvPAwhdNeLPNLRELTI 239
                 7999**********988885567766*******98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
                 HHH-TT--EEE-.. CS
       LRR_4  19 leklpnLkeLdL.s 31 
                 l+ +p+L++L++ +
  CDO68393.1 271 LRRCPHLETLHIlN 284
                 5569******9733 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.087
                 SS--EEE--SS---.E-S-HH.....H-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNqlt.diplle.....klpnLkeLdL 30 
                 p+Le+L++ n  l+ d  +l+     +lp L+eL +
  CDO68393.1 275 PHLETLHILNGALQgDNASLAssqavNLPALRELRI 310
                 678888888656666666655556667******988 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.37
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 le lp+L+ L++s +
  CDO68393.1 466 LEALPQLRRLHVS-C 479
                 677*******994.3 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.6
                 SS---E-S-HHH.-TT--EE CS
       LRR_4  10 nNqltdipllek.lpnLkeL 28 
                 +N lt+ ++l++ l +L+++
  CDO68393.1 749 DNALTSTEGLRNiLRQLRQI 768
                 58999999999989999876 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   5.2e+03     132     149 ..      79      96 ..      37      97 .. 0.48
   2 ?   -3.6   0.0       2.7   6.8e+03     180     198 ..     590     608 ..     588     616 .. 0.72
   3 !   15.1   0.0     5e-06     0.013     132     175 ..     836     878 ..     819     896 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
                     HTHHHHHHCHGG-EEEE- CS
  Choline_kinase 132 ekleklleelespvvfcH 149
                     +k+  +  + +  + fcH
      CDO68393.1  79 SKIFTMACSDRTAIRFCH 96 
                     233333346666788888 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.7
                     HHHHHHHHHHTTEEHHHCS CS
  Choline_kinase 180 gfDlanhfiEwagdyeeee 198
                     +  la h+ Ewa  + +e 
      CDO68393.1 590 AMHLARHVTEWATVSLYEA 608
                     667999*****98665555 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 5e-06
                     HTHHHHHHCHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 132 ekleklleelespvvfcHnDlqegNillnkeekklvlIDFEYag 175
                      +l++   +   + v++H Dl ++Nil+ k+++ + ++D+E  g
      CDO68393.1 836 RRLQSNSANRTVTPVLSHGDLAPRNILV-KDDRIVAIVDWETLG 878
                     3444444455555799************.999999******655 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.036        91      17      31 ..      25      39 ..      23      39 .. 0.86
   2 ?   11.2   0.8   9.9e-05      0.25       5      37 ..      72     105 ..      69     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.036
                TS-HHHHHHHCTT-H CS
       F-box 17 rLplsdllalrrVSk 31
                +L+  d+ alr+VS+
  CDO68393.1 25 SLSDLDRAALRDVSW 39
                577788********8 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.9e-05
                 HS-HHHHHHHHHTS-HHH..HHHHCTT-HHHHHHH CS
       F-box   5 rLPsevlrhILerLplsd..llalrrVSkgwrili 37 
                 +LP+e+l +I+     sd   +++  V+++wr+l 
  CDO68393.1  72 CLPNELLSKIFTM-ACSDrtAIRFCHVCRRWRSLA 105
                 79**********9.666689************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   8.1e+02      49      95 ..     692     741 ..     685     775 .. 0.76
   2 ?   10.4   0.0   0.00011      0.29     126     146 ..     853     873 ..     841     876 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
                  HHHHHHHHTS.-BTTB..--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr  49 leeakimkkl.khpni..vkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  +eeak m  +  h  i   +++ v  +e+ + iv+e ++g  L++  + +
   CDO68393.1 692 VEEAKAMIFIrAHTTIpvPEVYMVFKHEGWIHIVMERIDGVALREAQKYN 741
                  678999998866666521466777778999******99999998876666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00011
                  EST-SGGGEEEEETTEEEE-S CS
  Pkinase_Tyr 126 HrdlaarNvLlsenkvvkisD 146
                  H dla rN+L++++++v i D
   CDO68393.1 853 HGDLAPRNILVKDDRIVAIVD 873
                  *******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6357.56
//
Query:       CDO68394.1  [L=220]
Description: hypothetical protein BN946_scf184815.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-30  104.5   1.2    6.8e-30  103.5   0.2    1.9  2  Evr1_Alr  Erv1 / Alr family
  ------ inclusion threshold ------
        1.9    7.6   7.3        2.7    7.1   7.3    1.2  1  DUF3498   Domain of unknown function (DUF3498)


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.25   2.2e+03      23      32 ..      65      71 ..      31     101 .. 0.62
   2 !  103.5   0.2   7.5e-34   6.8e-30       1     100 []     117     211 ..     117     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
                HHHH-CHHHH CS
    Evr1_Alr 23 qkelavlkaf 32
                q+++    a+
  CDO68394.1 65 QQKT---AAM 71
                2222...222 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 7.5e-34
                 HHHHHHHHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHCHHHCCCC CS
    Evr1_Alr   1 cslWtllHtlaaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcsedkvkerw 99 
                 +s+Wt+lHt+aa++p+kpt  ++ ++    ++l++++ +ypC++Ca+h+ ++++++pp+  v+sr +l++Wl+e HNeVn+rl+ke+fdcs dk++erw
  CDO68394.1 117 RSTWTFLHTTAAYYPDKPTMAHRVNM---LSLLRALPVLYPCSVCATHLGETMKTHPPD--VSSRAALSRWLCEQHNEVNERLGKEKFDCSIDKLDERW 210
                 79************************...****************************98..******************************99****** PP

                 C CS
    Evr1_Alr 100 p 100
                 +
  CDO68394.1 211 K 211
                 6 PP

>> DUF3498  Domain of unknown function (DUF3498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.3    0.0003       2.7     262     374 ..      16     128 ..       2     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0003
                 XXXX.XXXXXXXXXXX..X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX....XXXXX. CS
     DUF3498 262 ekqhqvavprqnsagptaqirrvdqqsraggPplqrgrtpqsllssaslprpssgsllqssspseppagsrlrqqsssseegdspelkkrakhqqvqsP 360
                 +++++  +p+   +gp  +  ++  + r+  Pp+ + +  q+ ++  + ++   +  + +  +  + ++s+++qqss+s    +pe ++ +++   ++ 
  CDO68394.1  16 SSSTKSSLPPGMVIGPDGKPCKICTAFRHWKPPVDKPKQTQNNAQGGTQQQKTAAM-MAAFASGTGFTASSQQQQSSTS--TAVPEPEQYTRPAYCPPD 111
                 3444678999999***999999999999999***9999999998877666665555.4444444454556777777776..788888888887777776 PP

                 .....XXXXXXXXXXXX CS
     DUF3498 361 ve...satlspveRtaA 374
                 ve    +t    + taA
  CDO68394.1 112 VEelgRSTWTFLHTTAA 128
                 66333344433334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1478.56
//
Query:       CDO68395.1  [L=615]
Description: Glycoside Hydrolase Family 47 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-134  448.1   0.0   4.3e-134  447.9   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.9   0.0  2.4e-138  4.3e-134       1     457 [.      99     580 ..      99     581 .. 0.88

  Alignments for each domain:
  == domain 1  score: 447.9 bits;  conditional E-value: 2.4e-138
                     HHHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EE......EHHHHHHHHHHHHHH CS
  Glyco_hydro_47   1 afkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskev......svFEttIRyLGGLls 89 
                     af h+++gY +yA  hDelrP+s+++ d f+g+ +tlvDsLdt+limgl+eef++ +  ++ +++f  ++   +      + FEt+IRyLGGLls
      CDO68395.1  99 AFLHAYRGYTQYAGSHDELRPVSNTFVDNFNGWRLTLVDSLDTMLIMGLDEEFHKTIPIIA-NMTFALKEV-GIvigdyaPFFETVIRYLGGLLS 191
                     69***********************************************************.999996444.33588888*************** PP

                     HHHHH.S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC CS
  Glyco_hydro_47  90 aydlsekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelqe 184
                     ay +s  +e++ll++A +l+ +LlpAF+t+ glp+  vn  ++k++ + ++  +   Ae+ s ++E+++L++lTg k+Y+d++er+++ ++e++ 
      CDO68395.1 192 AYAIS--GEPILLARADDLGAMLLPAFNTSHGLPMYAVNTVSGKTR-TGWTGDNVLWAEALSCQMEYKYLAHLTGRKEYFDKVERIMDLMNEAD- 282
                     *****..********************************9555533.3444444456***********************************66. PP

                     .HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTTCTS.EE-E CS
  Glyco_hydro_47 185 ktklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtsteegklspe 279
                         + l+ +k ++ tg+  ++++s+ga +DS  EYllKq+l++g++e++ r+my + +dai k+ll+ ++ +  ++ll+v++v+   ++  s+ 
      CDO68395.1 283 --PKNHLFSTKWSVLTGQPINSQFSVGAFADSAHEYLLKQWLMTGKSESKARDMYLRDADAIIKNLLYISQ-N--RKLLYVTDVS---NSVPSHI 369
                     ..4568***********************************************************887733.3..479*****96...5668999 PP

                     EEGGGGHHHHHHHHHHHTT-H.....HHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS..................S-ECTSSSSEEE-... CS
  Glyco_hydro_47 280 idhLscFlgGllalgakllek.....eedlelAkkltegcvkayeatktglmPEifevkpces.............aeecewneekkdealk... 353
                     ++hLscFl+Gllalga++l+      + +   A+ l+ +c+ +y++ +tgl+P+ + ++   +                            +   
      CDO68395.1 370 FEHLSCFLPGLLALGAHTLPLsphdkQLHEWAAQGLAYTCWITYADHATGLGPDEMLMARMPTdskhphggrwlemL--------------Eewe 450
                     *****************995556744444446999*********************999665534444444444440..............2444 PP

                     ...........................GGG--B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSSS-EE-S-B-H CS
  Glyco_hydro_47 354 ..........................riedrkyllRPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtkeepekeDemeS 422
                                               +  +++yllRPE++ES+++++r tgde +re gw +f+a+ek +kt sgy++l  V+k++++ +Dem S
      CDO68395.1 451 aagspggvppglaevppvraaedrdyHAVKTSYLLRPETVESFYIMWRTTGDEAWRERGWAVFQAIEKEAKTFSGYASLTSVEKSPATLKDEMPS 545
                     456666666666777777766666666799***************************************************************** PP

                     HHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE CS
  Glyco_hydro_47 423 FwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplk 457
                     F+ aEtlKYlYLlFs+e++++ld++VfnTeAHpl+
      CDO68395.1 546 FFTAETLKYLYLLFSEEELIPLDRWVFNTEAHPLP 580
                     **********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3828.58
//
Query:       CDO68396.1  [L=1106]
Description: hypothetical protein BN946_scf184815.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-57  193.5   0.8    4.2e-56  190.6   0.8    2.1  1  Peptidase_S28  Serine carboxypeptidase S28
    9.8e-06   26.2   1.0        0.2   12.6   0.0    4.1  3  WD40           WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.8   4.7e-60   4.2e-56       2     401 ..       2     408 ..       1     419 [. 0.73

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 4.7e-60
  Peptidase_S28   2 klDhFdasnkrtfqqryfvndqfyknggpiflyiGgegslsas.....wvsng..eilklAkefgAlvlslEHRfYGqSiPvkdlste.nlrylss 89 
                    +lDhF +  k+tf++ry+vnd++yk+ggp+fl+  ge+++++      ++ +g  + ++lA+++++  +  EHR+YG+S P+++++t+ + ++l++
     CDO68396.1   2 PLDHFGK-RKDTFKNRYWVNDTYYKTGGPVFLFDSGEQNAEPLlpyylQEYHGlsATMRLAQRYNGVAILWEHRYYGDSLPFPENTTAdQWQFLTT 96 
                    69***76.678**************************999975222223444588899**************************999978999*** PP

  Peptidase_S28  90 eqaLaDlasfikalkqkfklsss...............skwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvag 170
                    eqaL+D+++f + ++    +++                ++wi  GgSY+g+  a +r   P+++++++aSSaP++a+vd   y++  e+sl+++ +
     CDO68396.1  97 EQALEDVVYFANRFSLSADGAQAsadsadfsnalhpsrTPWIWLGGSYPGVRGALLRVRNPDTIFAVWASSAPVHAQVDMAAYYKAAERSLTRNCS 192
                    ***********99885444332211111111122222269***************************************************99877 PP

  Peptidase_S28 171 ecakaveqgfaeveellktkegrqal...keelqlcskldektdkdva.kffsniasefqgvvqysydgkanaalsaisikelCklllnasktdli 262
                      + av++   +v++ l+ + +++     +  l++ s+++++   +      + + +      qy   g       + s+   C++l+   +t  i
     CDO68396.1 193 ADWVAVTR---YVDNTLQNGTAEEVAdlkYRLLSARSEVSKERAANASdVSAAGVLMDPLSFYQY--YGF------DASVLPFCNVLETRNST--I 275
                    77777765...556666655554444224556667777766633222202223333333344444..222......256888****9955554..4 PP

  Peptidase_S28 263 lrvevliqlfkslnqk..slnlstadisyqlanaekkdsslesladdrqWlyqtCtEfgfyqttds..eaqlfgskvpvelyidlCedvFgasyns 354
                    + +e     +  ++ +   + +  ++++y+ +  +++d       +dr W++q C+E+gfyq +d   ++ +  s  ++el++  C   F      
     CDO68396.1 276 TPFETGLASNLGIDVAldAFLTAIQEVNYDAIPGNPDDPV-----QDRSWMWQYCSEYGFYQRGDPnnPWSIETSFRSLELFQAECNSAFPRGLPP 366
                    4555555554444443114444555566666666666655.....89****************98655889999999*************766666 PP

  Peptidase_S28 355 kkvsqavkatnskYGgadnpkatnvvfvnGalDPWhalglkkstdss 401
                       s av +  +kYGg  n+  +nv+f+nG++DPW+ +gl + +++s
     CDO68396.1 367 ---SPAV-QNVNKYGG-WNMTPSNVLFTNGEFDPWRTMGLASIESNS 408
                    ...3333.33457***.**********************77665544 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0013        11      12      37 ..     564     589 ..     530     590 .. 0.64
   2 ?    2.2   0.0     0.043   3.8e+02       9      36 ..     668     696 ..     649     698 .. 0.67
   3 !   12.6   0.0   2.2e-05       0.2       9      38 .]     711     742 ..     704     742 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 +v++ a++   +  ++ +dD+++++W
  CDO68396.1 564 PVRCAAVNATFTHAITTGDDKKLKVW 589
                 2667766666666555666******* PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.043
                 SSSS.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40   9 GHss.vtslafspdgawlasGsdDgtvri 36 
                 GH s  t     +d ++++++++D ++r+
  CDO68396.1 668 GHASmLTTYLLTSDEQYIITADRDEHIRV 696
                 4422345555889999999**9*****98 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 2.2e-05
                 SS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 GH ++v++l ++++++  l+sG+ D+ +++Wd
  CDO68396.1 711 GHeKFVSALHVPSYKPStLVSGGGDPMLKVWD 742
                 9*999****966666666999977*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.51
# Mc/sec: 6559.02
//
Query:       CDO68397.1  [L=369]
Description: hypothetical protein BN946_scf184815.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-28   97.8   0.0    7.6e-28   97.2   0.0    1.3  1  CRAL_TRIO       CRAL/TRIO domain
     0.0047   17.1   0.0     0.0098   16.1   0.0    1.6  1  CRAL_TRIO_N     CRAL/TRIO, N-terminal domain
  ------ inclusion threshold ------
       0.12   11.8   1.4        0.3   10.5   1.1    1.7  2  SDA1            SDA1
       0.17   12.0   0.0       0.29   11.3   0.0    1.3  1  CRAL_TRIO_2     Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   1.7e-31   7.6e-28      11     159 .]     213     365 ..     204     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 1.7e-31
   CRAL_TRIO  11 ihgrDkegrpvlylrlgrfdpk..kls.leelvralvlvlerllkeleedgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlgkiliv 106
                 + g Dk+g+pv++  +g ++     ++ + +++r++v ++e  +k+l+  ++v++++ + D++g+s+ + + ++   +k+  +i+q+ ype l + +++
  CDO68397.1 213 VYGKDKDGHPVIWNLYGAVKDMkaVFEdVPKFIRWRVQFMEESIKLLDF-ETVDQMVQIHDYEGVSMTQRDANQKAAAKQATTIFQERYPEFLSRKFFI 310
                 5699*************9999866333455******************9.*********************999************************* PP

   CRAL_TRIO 107 naPklfkfafklvkpfldektreKikfvspsntea...tlekyidpeqlpkelGGt 159
                 n+P l +++f+l+kp+++++t  K+++v++  +     +l++ idp++lpk +GG+
  CDO68397.1 311 NVPTLLTWIFWLFKPLISANTLAKMSVVGSGAK-TigaELSQVIDPKELPKRYGGE 365
                 ****************************55333.2356*****************6 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.2e-06    0.0098       2      53 ..     121     183 ..     120     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-06
  CRAL_TRIO_N   2 ydellahlqeseyk........lteeekfW.ltre....dhddaclLRfLRArkwdvekAikrLe 53 
                   +el+++l+e+  k        lt   ++W +++      +  ++l +f RAr+ dv++A ++L+
   CDO68397.1 121 VKELRSKLPEIINKaypnassgLTV--TLWgVSLTtepnAKTSVVLAKFARARNLDVAQAAEMLV 183
                  6899999999999999999977444..47888888445555555*******************97 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   6.7e-05       0.3     156     227 ..      60     127 ..      41     208 .. 0.69
   2 ?   -1.2   0.0      0.24   1.1e+03      21      42 ..     286     307 ..     279     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.7e-05
        SDA1 156 eeeeeeeeeeeeeeeeeeekekkkk.kakeaseeekkkekeeekiskaselattrILTpaDFaklkelraeaa 227
                 ++e+  +++  +ee +ee k ++++ +a +a+++++  ek++e +++  +   tr +T+a+ +++kelr   +
  CDO68397.1  60 AKED--QTAALKEEADEEAKPAAEVaAAPAAEASAAVPEKTAEPVEE-PQNPLTRKFTEAEWKAVKELRS--K 127
                 2222..22222222222222223322445555556666667777776.78899999*************3..2 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.24
        SDA1  21 mmAArsLisLyRevnPelLkkk 42 
                  +AA+   +++ e +Pe L +k
  CDO68397.1 286 KAAAKQATTIFQERYPEFLSRK 307
                 589999999**********998 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.4e-05      0.29      52     129 ..     282     363 ..     245     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.4e-05
  CRAL_TRIO_2  52 nkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyvsrleeL.....arkidrtqllkslP 129
                  +  ++ ++k++  +++ ry++ l + ++++  t +  ++ ++++++ s     k+ +v + ++      +++id+++l+k+++
   CDO68397.1 282 DANQKAAAKQATTIFQERYPEFLSRKFFINVPTLLTWIF-WLFKPLISANTLAKMSVVGSGAKTigaelSQVIDPKELPKRYG 363
                  45578899*******************************.77788778877777788766554334444*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 2198.10
//
Query:       CDO68398.1  [L=138]
Description: hypothetical protein BN946_scf184815.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-50  169.0   4.1    6.7e-50  168.8   4.1    1.0  1  Histone        Core histone H2A/H2B/H3/H4
    2.1e-05   24.6   0.1    3.7e-05   23.8   0.1    1.4  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    4.5e-05   23.8   0.0      7e-05   23.1   0.0    1.3  1  CENP-S         CENP-S protein
    0.00012   22.6   1.7    0.00016   22.3   1.7    1.2  1  PAF            PCNA-associated factor histone like domain
     0.0028   17.9   0.1     0.0055   17.0   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   4.1   1.9e-53   6.7e-50       1     131 []       1     134 [.       1     134 [. 0.98

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 1.9e-53
                 XXEESXEEEXXXXEEXXXXXXXXXXHT...TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker...kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqeal 96 
                 mar+k++ark+++++ap+k+++ak+++    a+++   kk++r+rpgtval+eir+yqkst+lli+klpf+R+vrei +++k+dlr++++av+alqea+
  CDO68398.1   1 MARTKQTARKSTGGKAPRKQLAAKSQArktAAAATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAS 99 
                 9************************9999778888999************************************************************* PP

                 HHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  97 EallvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 Ea+lv+lfe++nl+a+haKRvTi+pkD+ lArrlr
  CDO68398.1 100 EAYLVSLFEDTNLAAIHAKRVTIQPKDLALARRLR 134
                 *********************************97 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1     1e-08   3.7e-05      11      76 ..      72     132 ..      60     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkr 76 
                  +v+ +a++f     +  + + +a+ al++as+ ++  + eD +  a Ha+R ti+ +D+  L +r
  CDO68398.1  72 RLVREIAQDF----KTDLRFQSSAVMALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLA-LARR 132
                 3455566666....56799****************************************85.4555 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.9e-08     7e-05      13      71 ..      72     132 ..      67     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.9e-08
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ ++++ al e   + l +l +D ++ a HAkR ti+++D+ L  R
  CDO68398.1  72 RLVREIAQdfKTDLRFQSSAVMALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLALARR 132
                 5566654423666789999*************************************99766 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.7   4.4e-08   0.00016       1      61 [.       1      59 [.       1      73 [. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.4e-08
         PAF  1 mVRTkAdvssarkavaakAprkslgasssssssssssp.kkkkkkyvGGNpvcpRptPaWQK 61
                m RTk ++   rk  ++kAprk+l+a+s++ +++   +   kk +      v  R++   QK
  CDO68398.1  1 MARTKQTA---RKSTGGKAPRKQLAAKSQARKTAAAATgGVKKPHRFRPGTVALREIRRYQK 59
                99******...********************9999888444444444444677777777776 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.5e-06    0.0055       2      64 ..      67     130 ..      66     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A   ++e+ e ++ +l + ++  + ++kr ti++++++lA
     CDO68398.1  67 KLPFQRLVREIAQDfKTDLRFQSSAVMALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLALA 130
                    78888888877778799999*****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.50
# Mc/sec: 835.44
//
Query:       CDO68399.1  [L=103]
Description: hypothetical protein BN946_scf184815.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-07   30.0   0.0    5.3e-07   29.7   0.0    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    6.4e-05   23.1   0.1    9.1e-05   22.6   0.1    1.4  1  TAF            TATA box binding protein associated factor (TA
    0.00014   22.2   0.0    0.00018   21.8   0.0    1.3  1  CENP-S         CENP-S protein
    0.00098   19.4   0.1     0.0018   18.5   0.1    1.6  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0019   18.5   0.2     0.0022   18.4   0.2    1.3  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.061   13.4   0.0       0.07   13.2   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.8e-10   5.3e-07      18      79 ..      35      96 ..      17      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.8e-10
    CENP-T_C 18 krfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                 r   ++g  ++++   ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +kr ++
  CDO68399.1 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGR 96
                33333445667888888899999999********************************9875 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1     3e-08   9.1e-05       9      66 .]      35      92 ..      27      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3e-08
                HHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  9 vkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                ++ +A   G++ +s    ++    +++ l +++++++ +++h+kR++ t+ Dv +AL+
  CDO68399.1 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 92
                5555555555555555555555556677899*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     6e-08   0.00018      36      73 ..      49      94 ..      21      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6e-08
      CENP-S 36 elvykq........lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                 l+y++        len+ +D  ++ +HAkR+t+t+ Dv+  ++r+
  CDO68399.1 49 GLIYEEtrgvlkifLENVIRDSVTYTEHAKRKTVTALDVVYALKRS 94
                5555555555555589999*********************999886 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   6.1e-07    0.0018      30      65 .]      56      91 ..      28      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.1e-07
                   HHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 30 aecveefieelaseAaeickkekrKtikaehiklAv 65
                     +++ f+e + + ++ +++++krKt++a ++  A+
     CDO68399.1 56 RGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYAL 91
                   557889*************************98886 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   7.3e-07    0.0022      95     129 ..      58      92 ..      16      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.3e-07
                 HHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  95 alEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +l+ +l+ +  ++  +++haKR+T+t+ D+  A++
  CDO68399.1  58 VLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 92 
                 67899*************************99987 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.3e-05      0.07      37      69 ..      61      93 ..      32     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
  TFIID-31kDa 37 rytssvLedAkvlaehakkkevslddvrlAiqs 69
                  +  +v++d+ ++ ehak+k+v++ dv  A++ 
   CDO68399.1 61 IFLENVIRDSVTYTEHAKRKTVTALDVVYALKR 93
                 57889**********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 770.82
//
Query:       CDO68400.1  [L=328]
Description: hypothetical protein BN946_scf184815.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-08   32.6   0.1    1.2e-07   31.5   0.1    1.7  1  F-box-like  F-box-like
    0.00027   20.7   0.2     0.0012   18.7   0.0    2.2  2  F-box       F-box domain
  ------ inclusion threshold ------
      0.095   12.6   0.0        0.2   11.5   0.0    1.6  1  F-box_4     F-box


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1     2e-11   1.2e-07       3      47 ..       6      48 ..       4      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2e-11
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47
                +LP+E L  IF++L+p +L+++ + +rr++ va  ++ L+ ++v+
  CDO68400.1  6 QLPNETLHAIFEHLSPASLAAVLRASRRFHLVA--ERILYANIVI 48
                7********************************..889**99986 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     2e-07    0.0012       4      34 ..       5      35 ..       2      42 .. 0.89
   2 ?   -3.0   0.0       1.2   7.4e+03      10      18 ..     270     278 ..     261     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2e-07
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHH CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwr 34
                 +LP+e l+ I+e+L++ +l a  r S++++
  CDO68400.1  5 TQLPNETLHAIFEHLSPASLAAVLRASRRFH 35
                68**************************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 HHHHHHHTS CS
       F-box  10 vlrhILerL 18 
                 +lr+I ++L
  CDO68400.1 270 LLRDISRHL 278
                 566666666 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.4e-05       0.2       4      51 ..       3      50 ..       1      89 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
     F-box_4  4 sLssLPlevlqhiaslLDsfsLsqLslvskllrevcssllqergiVll 51
                ++++LP e l+ i + L   sL  + + s+++  v++++l    +++ 
  CDO68400.1  3 TVTQLPNETLHAIFEHLSPASLAAVLRASRRFHLVAERILYANIVIVE 50
                5789***********************************988766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2210.26
//
Query:       CDO68401.1  [L=735]
Description: hypothetical protein BN946_scf184815.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-48  162.7   0.0    1.1e-47  161.7   0.0    1.5  1  RhoGAP     RhoGAP domain
    1.1e-14   54.5   2.2    3.1e-14   53.0   0.1    2.4  2  FCH        Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
       0.28   11.0   7.6      0.044   13.6   1.6    2.5  3  SKA2       Spindle and kinetochore-associated protein 2
       0.29   11.2   1.1        8.9    6.4   0.6    2.5  2  DUF1664    Protein of unknown function (DUF1664)
        1.9    8.7   5.9        1.8    8.7   2.5    2.6  2  Fib_alpha  Fibrinogen alpha/beta chain family
        3.9    7.3   9.6       0.21   11.4   2.8    2.3  3  DivIC      Septum formation initiator


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   3.6e-51   1.1e-47       1     146 [.     547     695 ..     547     700 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 3.6e-51
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT...TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds...dleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerleal 96 
                 P+i+ kc+e+iek+gl+t+giyR+ g  ++v +l+e++d++ ++++   +  + d+  v+s+LK++Lrelp+pL+t +++ ++++aa++e+e+ r  +l
  CDO68401.1 547 PPILVKCCEAIEKYGLTTQGIYRIGGTHSKVMKLKERLDRDLDSVNldaEEWSSDISNVTSVLKLWLRELPDPLFTSSQHADFLDAARNENERARHIRL 645
                 99*****************************************999987777889******************************************** PP

                 HHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT- CS
      RhoGAP  97 kellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrp 146
                 +e ++ LP++n++tL+yL+ hL++v +++++n M+++nLaivf+PtL+ +
  CDO68401.1 646 HERVNALPDPNYSTLKYLMGHLHKVVQHEAQNAMSVQNLAIVFGPTLFGQ 695
                 ***********************************************986 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.1     1e-17   3.1e-14       1      76 [.     172     248 ..     172     249 .. 0.95
   2 ?    0.4   0.2      0.26   7.9e+02      33      69 ..     257     290 ..     255     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT.-.....HHHHHHHHHHHHHHHHHHHHHH CS
         FCH   1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrr.kkkseestlvtawtvlleeteklaqshl 76 
                 g+  l +r++q++ ++ + ++flk Ra +E+eY+k++qkLa++++++  +++++ +++v+aw++ + ++e +a++++
  CDO68401.1 172 GVPLLMDRIKQSMVSCREAAAFLKRRAGVEDEYGKAMQKLARQAANEYaTSEAKAGSFVNAWQSSMRTHELMAENRI 248
                 5678999***************************************98888889*******************9986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.26
                 HHHHHHHHCT----TT.-.....HHHHHHHHHHHHHHH CS
         FCH  33 YakkLqkLakkylkrr.kkkseestlvtawtvlleete 69 
                  +  L +Lak ++k+r  +k     l t ++  l+e e
  CDO68401.1 257 MSEELMNLAKEVDKTRkATK----DLATRYERALQESE 290
                 5788999*******887766....44444444444444 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.37   1.1e+03      71      97 ..     176     202 ..     175     215 .. 0.85
   2 ?   13.6   1.6   1.5e-05     0.044      33      96 ..     237     303 ..     232     310 .. 0.85
   3 ?   -3.3   0.1       2.6   7.9e+03      55      83 ..     353     381 ..     349     386 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.37
        SKA2  71 lidkirttlvanrellqqLqasaelpp 97 
                 l+d+i++++v+ re    L+++a+++ 
  CDO68401.1 176 LMDRIKQSMVSCREAAAFLKRRAGVED 202
                 799************999999998865 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.5e-05
        SKA2  33 ypdna...eNpvkLlerlkkvkeelqaLkeqceellaekkelidkirttlvanrellqqLqasaelp 96 
                 ++ ++   eN +k  +rl+++ eel +L +++++  ++ k+l+++ ++ l +  +++++ + +  ++
  CDO68401.1 237 MRTHElmaENRIKFAARLNEMSEELMNLAKEVDKTRKATKDLATRYERALQESESITEKAKSRFDVT 303
                 55555566999***************************************99999988877776555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.6
        SKA2  55 qaLkeqceellaekkelidkirttlvanr 83 
                 q+L++q +++ a+     d+ r+ + +++
  CDO68401.1 353 QNLQRQEDDIRARVSAASDAYRKAVTDTQ 381
                 45666666666666666666666555555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6     0.003       8.9      27      96 ..     238     307 ..     224     316 .. 0.80
   2 ?    2.4   0.0     0.052   1.6e+02      66     110 ..     565     609 ..     557     616 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.003
     DUF1664  27 klsdlmfvTkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl 96 
                 +  +lm   +  ++  ++++s++l ++ +++ +t++  ++   r ++ l+e++ i+++ k+  +   e+l
  CDO68401.1 238 RTHELMAENRIKFAARLNEMSEELMNLAKEVDKTRKATKDLATRYERALQESESITEKAKSRFDVTAEEL 307
                 5566777777788888999999999999999999999988889999999999999998887766666655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.052
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedvesvkeav 110
                 + i r++ +  +++++++ +++++++v+ d +e ++d+++v ++ 
  CDO68401.1 565 QGIYRIGGTHSKVMKLKERLDRDLDSVNLDAEEWSSDISNVTSVL 609
                 668888888899999999999999999999999999999998765 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.22   6.6e+02      14      94 ..     165     245 ..     158     249 .. 0.58
   2 ?    8.7   2.5   0.00062       1.8      24     101 ..     241     315 ..     235     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.22
                 EEEE-CCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCHHH CS
   Fib_alpha  14 slCPtgCglqdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvikksskeleeeilrlk 94 
                  lC t Cg+  l+++ ++++  + ++    l++ +  + e  + ++++  + +++ ++++ +  + ++  +++++++ l  +
  CDO68401.1 165 ALCETDCGVPLLMDRIKQSMV-SCREAAAFLKRRAGVEDEYGKAMQKLARQAANEYATSEAKaGSFVNAWQSSMRTHELMAE 245
                 678899999999988887764.344555555555555555555555554444444433333336666666666665555555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00062
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe 101
                 +l+ + + ++  +l+++ +el +++++  ++++ +k++ + ++++ ++++   ++++k +++ +   ++l++ + ++e
  CDO68401.1 241 ELMAENRIKFAARLNEMSEELMNLAKEVDKTRKATKDLATRYERALQESE---SITEKAKSRFDVTAEELERLLLQKE 315
                 6889999999*************999999999999999999888887776...7999999999988888888887776 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.8   6.9e-05      0.21      18      68 ..     253     303 ..     250     306 .. 0.92
   2 ?   -3.9   0.2       4.2   1.3e+04      35      50 ..     354     369 ..     353     376 .. 0.63
   3 ?   -1.9   0.0      0.99     3e+03      31      56 ..     633     657 ..     632     657 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglv 68 
                 ++ ++ +e+  l +e++k ++  ++L+ + ++  ++ + i+e+A+s+++  
  CDO68401.1 253 RLNEMSEELMNLAKEVDKTRKATKDLATRYERALQESESITEKAKSRFDVT 303
                 5788999*************************99*************9876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.2
                 HHHHHHHHHHHHHCC- CS
       DivIC  35 klkaeneeLeaevkdL 50 
                 +l+ ++++  a+v+  
  CDO68401.1 354 NLQRQEDDIRARVSAA 369
                 5666666666666655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  31 aelaklkaeneeLeaevkdLksdedy 56 
                 a +++ +a+  +L ++v+ L  d++y
  CDO68401.1 633 ARNENERARHIRLHERVNAL-PDPNY 657
                 56888899999999999999.68877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 4644.34
//
Query:       CDO68402.1  [L=387]
Description: hypothetical protein BN946_scf184815.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-64  217.8   6.4    2.5e-64  217.6   6.4    1.0  1  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   6.4   1.4e-68   2.5e-64       2     332 ..      27     383 ..      26     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 217.6 bits;  conditional E-value: 1.4e-68
         Zip   2 llkilaiiaililsllgllgpllvpkiskl...lsklllslllafavGvllgtaflhLlPealealeesqleeehth...plagllvllGflllllvek 94 
                 +l+i++i++il++sl+g l+p+l ++++ l    + +++  +++f++Gv+++t+++hLl +a+ +l++++l+    +   p+a +++l+++++++++e 
  CDO68402.1  27 GLRIGSIFIILATSLIGALFPVLAKRTKWLnerIPTRVFDTAKYFGSGVIIATSLIHLLDPAIDELSSPCLDP--AWqdyPYALGICLVSIFFIFITEL 123
                 689********************9987766999*************************************988..45568******************* PP

         Zip  95 lltmivek..................ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeed 175
                 ++  + +                   +  h+ +t + +++ s +++a+ s  + k+++ e  ++h+++  + +  ++++++ +++  ++++++  +++ 
  CDO68402.1 124 VAFRWGTAmlarlglahdahghglasHAAHGPETDQATQALSRKQQAEPSLGQIKSDDVESQHSHDRGSSSPH-YPHTHSDIEKHNGHHTHNH--GHAL 219
                 *****999********887777776555555555555555555566666666666666666655555543333.2333333333333344444..4566 PP

         Zip 176 keklaslkvraiilllglilHsfidGLAlGvssssstgislfiAvllH...elpeelglgaiLlkaglsrkkav...llnllfaltaplGiliGilvrs 268
                 + ++a++ + + +l++g+ilHs+ +GL l+    ++++++lfi++++H   e++e+lg+g++L+   l++k+ +   l +llf++t+p+Gi++G++vr+
  CDO68402.1 220 GDSPAAQIIGVAVLEFGVILHSVLIGLTLA---VNDEFKVLFIVLVFHpatEMFEGLGVGSRLAYIRLPQKYNYvpiLGALLFGITTPIGIAVGLGVRQ 315
                 8899999999********************...899************9999*********************999999******************** PP

         Zip 269 ..isessgaeivsgillalsaGtflYvalvellphEllnek..gssslkqsllqllglllGfalmlll 332
                   ++ s++a+ivsg+l+als+G++lY++lvel++hE+l ++   + s ++  ++l ++++G++lm+ll
  CDO68402.1 316 syNPDSTTASIVSGVLDALSSGILLYTGLVELMAHEFLFNSdmLNGSNSKLAYALCCMIAGAGLMALL 383
                 *****************************************98445777888999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2671.11
//
Query:       CDO68403.1  [L=120]
Description: hypothetical protein BN946_scf184815.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   15.9   0.1      0.025   15.5   0.1    1.4  1  CHRD      CHRD domain


Domain annotation for each model (and alignments):
>> CHRD  CHRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   1.4e-06     0.025      17      55 ..      43      81 ..      10     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
        CHRD 17 tgasGtavltldddgktlsysvtvsglsdvtaaHihega 55
                 +a+G+a+ +++ +++ ++++v + g +++t aH+ e  
  CDO68403.1 43 YSAGGRAWWHTSRNDTRMHVTVRFLGANRPTRAHVYEDG 81
                2389******************************87763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 772.71
//
Query:       CDO68404.1  [L=644]
Description: hypothetical protein BN946_scf184815.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-40  138.5   0.1    3.5e-40  137.6   0.1    1.4  1  DEAD        DEAD/DEAH box helicase
    5.2e-29  100.8   0.0    3.9e-28   98.0   0.0    2.2  2  Helicase_C  Helicase conserved C-terminal domain
    5.7e-06   26.4   0.0    2.2e-05   24.5   0.0    1.9  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.069   11.4   0.6      0.088   11.1   0.6    1.2  1  CDC45       CDC45-like protein
      0.094   13.1   0.0       0.18   12.2   0.0    1.6  1  AAA_19      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.1   9.7e-44   3.5e-40       2     175 ..      38     216 ..      37     217 .. 0.94

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 9.7e-44
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet........kgktgpkalivePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardq 90 
                  +Q +aipl+l+++d+l++a+TGsGKT+a++ipv+q+v++          ++++++al+++PtreLaeq+  +l++++ y+d  ++v  +  g++a+ q
  CDO68404.1  38 LVQTKAIPLALENRDILARARTGSGKTAAYCIPVVQKVLNAkasllsddSKRPATRALVLVPTRELAEQVSAHLRSLLAYCDdeVTVANVSAGTTAHLQ 136
                 58*************************************99******99788899*************************997778888899******* PP

                 HHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ++ l+ ++div++tp+r + +l++++l+l +++ lV+DEad +l+ g  +++++i+          ++  q  ++SAT+++dv+ 
  CDO68404.1 137 KTLLSDNPDIVIATPSRALAFLQNKNLSLGSLESLVIDEADLILSYGHDEDVRQIFGGG-----YLPKVFQSFLMSATMTEDVEA 216
                 ****999************************************************9998.....3456678***********986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.36   1.3e+03      11      61 ..      86     142 ..      74     190 .. 0.68
   2 !   98.0   0.0   1.1e-31   3.9e-28       2     111 .]     252     446 ..     251     446 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.36
                 HHTTTTSEEEEEESSHHHHHH....HHHHHHHT.....TSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek....vklllekk.....gikvavlhgelpqnereeileq 61 
                 ++++   ++l+ v+t++ +e+    ++ l         +++va + + +++  ++  l++
  CDO68404.1  86 DSKRPATRALVLVPTRELAEQvsahLRSL---LaycddEVTVANVSAGTTAHLQKTLLSD 142
                 56777889999999999776653342222...1223446777766666666666666554 PP

  == domain 2  score: 98.0 bits;  conditional E-value: 1.1e-31
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG......................... CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdv......................... 75 
                 k++  + +lkl+ ++gk+++fvn +dr++++kl+le+++ik++vl++elp n+r +++++fnkg +d++ia+d                          
  CDO68404.1 252 KFLLTYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIASDEstgraerdideeddvteqaeddfmd 350
                 666777888*******************99************************************************999999999999999999999 PP

                 ............................................................GTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  76 ............................................................aerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                                                                             ++rG+d+ +v++Vinfdlp++ + y +r+GRt+Rag
  CDO68404.1 351 tqregeveqakatdapsgepsteslrgkkrkgspapdpssskdkpskrkkrkvasdaeygVSRGVDFVDVSCVINFDLPTSSRAYTHRVGRTARAG 446
                 999999999999999999999999999999999999999999999999999999999999999*******************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.2e-09   2.2e-05      23     141 ..      49     176 ..      22     210 .. 0.82
   2 ?   -1.8   0.0      0.74   2.7e+03      64      84 ..     338     358 ..     336     398 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.2e-09
                 TTSEEEEEESTTSTHHHHH.HHHHHHH-S................-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--.........-S CS
      ResIII  23 rdkrglikmaTGtGKTlva.aklierllkkgkee...........kflflvprkslleqtleefkkflseayke..igkkvsgdkkka..kekdstnkk 105
                 +++ +l  + TG+GKT  + + +++++l+++  +           ++l+lvp+++l eq   +++++l  +++e  +  +vs  +  +  k   s+n +
  CDO68404.1  49 ENRDILARARTGSGKTAAYcIPVVQKVLNAKA-SllsddskrpatRALVLVPTRELAEQVSAHLRSLLAYCDDEvtV-ANVSAGTTAHlqKTLLSDNPD 145
                 467789999**********8889999998744.4699****************************999999888852.3333333333345667999** PP

                 EEEEEHHHHHHTH........HHHTTT-SEEEEETG CS
      ResIII 106 ilvttiqsldadseeeeeeseellrdrfdviiiDEa 141
                 i+++t +++ a +     +++ l+ ++ + ++iDEa
  CDO68404.1 146 IVIATPSRALAFL-----QNKNLSLGSLESLVIDEA 176
                 ***********99.....666666777777888887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.74
                 HHHHHHHHHHGGGGTGG.... CS
      ResIII  64 kslleqtleefkkflseayke 84 
                  +++eq++++f++++ e   e
  CDO68404.1 338 DDVTEQAEDDFMDTQREGEVE 358
                 68999******8877665444 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   2.4e-05     0.088     125     213 ..     329     404 ..     250     508 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.4e-05
       CDC45 125 aleeeeesdeede..eeeeeddddeeeeeeeee.....deedeeedeeeskkkrksksdeeee.....sddddersrkrrrsepsakklrrqlkkerrk 211
                 + e++ +++  d+  e+ e+d  d+++e e e+     + + e ++e+ ++kkrk       +     s+++d++s++++r+                 
  CDO68404.1 329 RAERDIDEE--DDvtEQAEDDFMDTQREGEVEQakatdAPSGEPSTESLRGKKRKG------SpapdpSSSKDKPSKRKKRK----------------- 402
                 222222221..111111111111111111111100000111111111122222221......12233222333333333322................. PP

       CDC45 212 ye 213
                   
  CDO68404.1 403 VA 404
                 22 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.9e-05      0.18       1     111 [.      40     176 ..      40     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
      AAA_19   1 qreave.alkekvllvtaGpGtGKT.........rvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............atTiHrlal 77 
                 q++a+  al+++ +l  a  G+GKT         +vl+++ +ll +  ++++ + l++ +t+  a++++  l++l+a              tT H l  
  CDO68404.1  40 QTKAIPlALENRDILARARTGSGKTaaycipvvqKVLNAKASLLSDDSKRPATRALVLVPTRELAEQVSAHLRSLLAYcddevtvanvsaGTTAH-LQK 137
                 789998899****************444443333367777777778888888********************99988888988887777444444.322 PP

      AAA_19  78 ...............ldfddlltealelleeaeeekklqeeellivDEf 111
                                         al++l+  +++  l + e l++DE+
  CDO68404.1 138 tllsdnpdiviatpsR--------ALAFLQ--NKNLSLGSLESLVIDEA 176
                 4555444432222220........233333..33444444447777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4238.69
//
Query:       CDO68405.1  [L=508]
Description: hypothetical protein BN946_scf184815.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-10   39.9   0.0    4.2e-10   39.4   0.0    1.2  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   2.3e-14   4.2e-10     171     264 .]      13      99 ..       6      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.3e-14
                 TSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT...HHHHHTSGGG CS
     Pkinase 171 eneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt...aeellqhpyl 264
                  ++y++++D+Ws+G +lye+++g  pf +++ ++++++++++         ++ +k++e  +is e++dll++ll+  +  Rl+   ++e+l+hp++
  CDO68405.1  13 PSGYGRETDWWSMGAMLYEMVYGIAPFFSREIRHTYARIMEH---------HKCLKIDESAKISGELRDLLRRLLTSAE-LRLGrndVREILEHPFF 99 
                 5789************************44444433333333.........445678899***************9865.5555555********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3714.24
//
Query:       CDO68406.1  [L=89]
Description: hypothetical protein BN946_scf184815.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 628.48
//
Query:       CDO68407.1  [L=281]
Description: hypothetical protein BN946_scf184815.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-17   62.9   2.8      1e-16   61.2   2.8    1.7  1  Dynactin_p22   Dynactin subunit p22
     0.0023   17.7   9.4     0.0066   16.1   2.0    2.2  2  Lebercilin     Ciliary protein causing Leber congenital amaur
     0.0058   17.0   0.4      0.016   15.6   0.4    1.7  1  REV1_C         DNA repair protein REV1 C-terminal domain
     0.0073   15.9   2.3      0.015   14.9   2.3    1.5  1  MscS_porin     Mechanosensitive ion channel porin domain
  ------ inclusion threshold ------
      0.051   13.8   8.3       0.08   13.2   0.5    3.0  2  Cortex-I_coil  Cortexillin I, coiled coil
      0.065   12.9   4.1       0.11   12.1   4.2    1.3  1  Laminin_I      Laminin Domain I
       0.68   10.5   6.5        7.8    7.0   6.5    2.3  1  APG6_N         Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   2.8     4e-20     1e-16       4     167 .]      68     256 ..      65     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 4e-20
  Dynactin_p22   4 aLEeriaeLEkrvlGeekekeked.............esiidsLakvqkklssavskrekikellkkleelekyLdpeyedseelpde......... 78 
                   +LE r++ LE  ++G++ ++ ++               +++ + +++q++l++++++ +++k ++++++++  +L p+++ s +l+ +         
    CDO68407.1  68 SLELRLRWLETLLFGAKHDALEQVskaaakgeklkegDTLVRRAEDLQRRLDNVIQNSDSLKRFMERYDQYAHMLTPQFALSASLAMNpptyenmst 164
                   688888888888888877665544445566667777889*****************************************99997766679999999 PP

  Dynactin_p22  79 vKleliLa.eedeLkktaalleqlqeLkp..vldseeikdvpelkekLekLsqihlkqqeeveelseevkkllekYnklvltlskqfiqwde 167
                    +le+ L+ +e++++   ++l++++ L++  v    ++ d + l+++Le+L   h +   ++ +l++++  l+++Y   v tls+ f+ wde
    CDO68407.1 165 SELEAFLSeMESDIRAAERDLQEISALESkgVTGAGKLADYEALQPRLESLLKAHDDDVHKAVDLEKRIALLMDRYATNVDTLSELFVSWDE 256
                   99999986379***************975559***********************************************************7 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.1     0.011        29      94     158 ..      85     150 ..      77     187 .. 0.50
   2 !   16.1   2.0   2.6e-06    0.0066      87     191 ..     168     277 ..     160     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
  Lebercilin  94 eaellrlkdklkklkkLsedknLaer.eeLqkkLeeleakleekeekikeLerkleleeksfrrql 158
                  ++l++++++  k +kL e  +L  r e+Lq++L+++ ++ ++ ++ +++  +++++++ +f+   
  CDO68407.1  85 HDALEQVSKAAAKGEKLKEGDTLVRRaEDLQRRLDNVIQNSDSLKRFMERYDQYAHMLTPQFALSA 150
                 456666666666667777666666552447777666555544444444444444444444444443 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.6e-06
  Lebercilin  87 ekklkekeaellrlkdklkklkk.....LsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeie 180
                 e  l e e++++ ++++l++ ++     +  + +La+ e Lq +Le+l +  ++  +k  +Le+++ l+   +++++ + ++      e ++++++e+ 
  CDO68407.1 168 EAFLSEMESDIRAAERDLQEISAleskgVTGAGKLADYEALQPRLESLLKAHDDDVHKAVDLEKRIALLMDRYATNVDTLSELFVSWDEAIRDVEDEVL 266
                 444555555555555555555540002255678****************************************************************** PP

  Lebercilin 181 rlkqklkeKer 191
                 +++++ +e+ +
  CDO68407.1 267 KMERDRQERRK 277
                 *******9976 PP

>> REV1_C  DNA repair protein REV1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   6.1e-06     0.016      21      87 ..     203     272 ..     197     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.1e-06
      REV1_C  21 eDvealakyLkkvv.eeerdlekavavlkwlrvlleee..eeskeeeageaWekafrevkeavqeavrkr 87 
                  D eal+  L++++ +++ d++kav++ k +  l++++  + ++ +e   +W++a+r+v+++v ++ r r
  CDO68407.1 203 ADYEALQPRLESLLkAHDDDVHKAVDLEKRIALLMDRYatNVDTLSELFVSWDEAIRDVEDEVLKMERDR 272
                 699999999*****8899********************776667788899************98876665 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.3   5.9e-06     0.015       6     106 ..      92     190 ..      87     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.9e-06
  MscS_porin   6 ekakldeaeqkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaql 104
                  ka  + ++ k+  +  ++a +l    d+  + ++ l++ ++++ +    l+ + +    ++ + ++++++++s++eLe  l + +s+  +++++l+++
  CDO68407.1  92 SKAAAKGEKLKEGDTLVRRAEDLQRRLDNVIQNSDSLKRFMERYDQYAHMLTPQFALS--ASLAMNPPTYENMSTSELEAFLSEMESDIRAAERDLQEI 188
                 5555444444555555678888888999999999999999999999999999999888..889**********************************98 PP

  MscS_porin 105 ns 106
                  +
  CDO68407.1 189 SA 190
                 75 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.7     0.077     2e+02      75      99 ..     158     182 ..      83     190 .. 0.60
   2 ?   13.2   0.5   3.1e-05      0.08       5      82 ..     189     268 ..     185     277 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.077
                    HHHHHHHHHHHHHHHHHHHHCHHHH CS
  Cortex-I_coil  75 eleklarlelesrlsktekdkaile 99 
                      e+++  ele+ ls +e d    e
     CDO68407.1 158 TYENMSTSELEAFLSEMESDIRAAE 182
                    4578888888888888888865555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.1e-05
                    XXXXXXXXXHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil   5 erleasknelankla...glenslesekvsreelikqkdelesllasleseaaerekrlreleakldealknleleklarl 82 
                     +le+     a kla   +l+  les   ++++ +++  +le+ +a+l ++ a     l el    dea++++e+e l ++
     CDO68407.1 189 SALESKGVTGAGKLAdyeALQPRLESLLKAHDDDVHKAVDLEKRIALLMDRYATNVDTLSELFVSWDEAIRDVEDEVL-KM 268
                    67888888888899844458889****9999*99*****************************************966.44 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.2   4.5e-05      0.11      61     243 ..      89     263 ..      84     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
   Laminin_I  61 kkatqvlakaqkvnaesertlnnakeLaekikkladnikeilekvatlne.neealpssklseelaeaqrlLeelrsRdftkqleeaeaelkaAqkLLs 158
                 +++ ++ ak++k+++  ++ + +a++L+    ++++n   +   ++++++   + +p+ +ls+ la      e +   ++++ l e e + +aA++ L+
  CDO68407.1  89 EQVSKAAAKGEKLKE-GDTLVRRAEDLQRRLDNVIQNSDSLKRFMERYDQyAHMLTPQFALSASLAMNPPTYENMSTSELEAFLSEMESDIRAAERDLQ 186
                 789999999999875.58889999999999999999999999999999998899999999999999999999999999999999999999999999999 PP

   Laminin_I 159 rvqtllqklqeenkaLkealrdsLaeyeakLsDlrelleeAaaktrdanrlnlanqanlreiekkkeevseeknqleetlktard 243
                 ++  l      e k+   a   +La+yea    l++ll++  + +  a +l ++ +  ++   + ++++se      e + + +d
  CDO68407.1 187 EISAL------ESKGVTGA--GKLADYEALQPRLESLLKAHDDDVHKAVDLEKRIALLMDRYATNVDTLSELFVSWDEAIRDVED 263
                 99999......88888666..8899999888888999998888899888888888888888888888888877766666666555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.5     0.003       7.8      12      75 ..     112     190 ..     105     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.003
      APG6_N  12 eeldkqleqaekerdaYeeflkklkkekkeeek...............qdeeleeleeeleklekeeeelleeLkelek 75 
                 e l+++l+++ +  d++++f+++ ++++   +                ++ ++ ele  l+++e++ +++++ L+e+ +
  CDO68407.1 112 EDLQRRLDNVIQNSDSLKRFMERYDQYAHMLTPqfalsaslamnpptyENMSTSELEAFLSEMESDIRAAERDLQEISA 190
                 6799*********************99766555999**********996666666666677777777777666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1922.47
//
Query:       CDO68408.1  [L=422]
Description: hypothetical protein BN946_scf184815.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-15   56.3   0.1    2.4e-13   49.3   0.0    2.9  3  SHNi-TPR     SHNi-TPR
    5.3e-11   42.6  13.9      1e-05   25.8   0.2    3.5  4  TPR_12       Tetratricopeptide repeat
    4.9e-06   26.1   0.1       0.44   10.5   0.0    3.9  3  TPR_1        Tetratricopeptide repeat
     0.0028   17.3   5.2          2    8.2   0.3    4.5  4  TPR_11       TPR repeat
     0.0035   17.4  12.4       0.94    9.8   0.0    5.1  5  TPR_2        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   15.0   8.4        1.8    9.0   0.0    4.5  5  TPR_8        Tetratricopeptide repeat
      0.086   13.4  12.9       0.46   11.0   0.1    4.8  4  TPR_19       Tetratricopeptide repeat
       0.52   10.5   3.8         35    4.7   0.0    4.0  4  TPR_7        Tetratricopeptide repeat
       0.81   10.7  12.2        2.5    9.2   0.5    5.4  6  TPR_14       Tetratricopeptide repeat
        1.1    9.9  13.1        7.3    7.3   1.3    4.6  5  TPR_16       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.025        44      16      30 ..      37      51 ..      36      56 .. 0.90
   2 !   49.3   0.0   1.3e-16   2.4e-13       1      36 [.     187     222 ..     187     224 .. 0.97
   3 ?   -2.3   0.0       1.8   3.1e+03      11      28 ..     240     257 ..     239     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.025
    SHNi-TPR 16 nFpqAveDlrkaLeL 30
                +++q ve + +aLe+
  CDO68408.1 37 KYEQSVEHYASALEI 51
                8*************9 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 1.3e-16
    SHNi-TPR   1 AdvydlLGEislEnenFpqAveDlrkaLeLreqllp 36 
                 Ad+y+ LG++slE+e+F+qA++D+ + L L+++llp
  CDO68408.1 187 ADTYIALGDVSLETEKFDQAITDYSAGLTLKTELLP 222
                 9*********************************99 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.8
    SHNi-TPR  11 slEnenFpqAveDlrkaL 28 
                 +l++++  +A++  ++aL
  CDO68408.1 240 DLTSGRLGDAITHAERAL 257
                 678888889999999998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.3   1.3e-08   2.3e-05      14      57 ..      33      76 ..      27      78 .. 0.94
   2 ?   -1.9   0.4       2.4   4.3e+03      22      36 ..     124     138 ..     120     146 .. 0.62
   3 !    9.7   0.0   0.00057         1      20      66 ..     166     208 ..     156     211 .. 0.81
   4 !   25.8   0.2   5.6e-09     1e-05       2      75 ..     186     260 ..     185     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.3e-08
      TPR_12 14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyra 57
                ++l++y+++ e++  aleia++ +G++  +ta+ ++++g ++++
  CDO68408.1 33 FALKKYEQSVEHYASALEIATKKYGEKAFETAELYFAYGKALLE 76
                689************************************99875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
      TPR_12  22 Alellekaleiarrl 36 
                 A +l+ +a  +a++l
  CDO68408.1 124 AVDLFAEAQKAAEEL 138
                 556666666666555 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00057
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 d A++++ek  e   ++    ++ +a t+++Lg++ ++++++++A+ 
  CDO68408.1 166 DLARAIYEKQQEDSDEI----KLKLADTYIALGDVSLETEKFDQAIT 208
                 56677777776666666....5679**********99********86 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 5.6e-09
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr.algryeeAlelleealaia 75 
                 +a ++  l++v ++ +++d+A++ + + l + ++ll   + + a++ + L+++++  +gr+ +A+ + e+al+  
  CDO68408.1 186 LADTYIALGDVSLETEKFDQAITDYSAGLTLKTELLPLSSRQIAEAHYKLSIVLDlTSGRLGDAITHAERALDSV 260
                 5789999**********************************************96377**************865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.4   0.00048      0.87      12      30 ..      33      51 ..      32      52 .. 0.93
   2 !   10.5   0.0   0.00024      0.44       1      30 [.     187     216 ..     187     217 .. 0.92
   3 ?    0.1   0.0      0.46   8.2e+02      15      28 ..     244     257 ..     242     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00048
                HHTT-HHHHHHHHHHHHHH CS
       TPR_1 12 fklgkydeAleyyekALel 30
                f l+ky++ +e+y  ALe+
  CDO68408.1 33 FALKKYEQSVEHYASALEI 51
                789***************8 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALel 30 
                 a+++  lG + ++ +k+d+A+ +y+  L+l
  CDO68408.1 187 ADTYIALGDVSLETEKFDQAITDYSAGLTL 216
                 789999******************999887 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.46
                 T-HHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekAL 28 
                 g++ +A+ + e+AL
  CDO68408.1 244 GRLGDAITHAERAL 257
                 78889********9 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3    0.0011         2       5      23 ..      33      51 ..      29      54 .. 0.91
   2 ?   -0.3   0.1      0.48   8.6e+02      27      40 ..      63      76 ..      62      77 .. 0.84
   3 !    7.4   0.0     0.002       3.5       1      24 [.     194     217 ..     194     239 .. 0.84
   4 ?   -2.8   0.0       2.9   5.2e+03       8      21 ..     244     257 ..     243     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
      TPR_11  5 yeqGkyeeAieaYkkAlkl 23
                +++ kye+++e+Y  Al++
  CDO68408.1 33 FALKKYEQSVEHYASALEI 51
                7899*************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.48
      TPR_11 27 naeayynLGlayyk 40
                 ae+y++ G+a+++
  CDO68408.1 63 TAELYFAYGKALLE 76
                5899******9986 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.002
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkld 24 
                 Gd+  e  k+++Ai++Y++ l l+
  CDO68408.1 194 GDVSLETEKFDQAITDYSAGLTLK 217
                 77778899**********999886 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.9
      TPR_11   8 GkyeeAieaYkkAl 21 
                 G++ +Ai++ ++Al
  CDO68408.1 244 GRLGDAITHAERAL 257
                 89999999866666 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.6    0.0015       2.6      11      31 ..      32      52 ..      29      54 .. 0.89
   2 ?   -1.1   0.3       1.5   2.7e+03       1      13 [.      64      76 ..      64      77 .. 0.82
   3 ?   -2.8   0.5       5.4   9.6e+03      17      26 ..     128     137 ..     124     141 .. 0.63
   4 !    9.8   0.0   0.00052      0.94       1      30 [.     187     216 ..     187     219 .. 0.91
   5 ?    3.7   0.0     0.047        84      14      28 ..     243     257 ..     229     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
       TPR_2 11 yyklgdyeeAleafekAleld 31
                +++l++ye+ +e++  Ale++
  CDO68408.1 32 AFALKKYEQSVEHYASALEIA 52
                799***************986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
       TPR_2  1 aealynlGlayyk 13
                ae++++ G+a+++
  CDO68408.1 64 AELYFAYGKALLE 76
                7899999999875 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.4
       TPR_2  17 yeeAleafek 26 
                 ++eA +a e+
  CDO68408.1 128 FAEAQKAAEE 137
                 4566665554 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00052
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a+ + +lG++ ++  ++++A+ ++ + l l
  CDO68408.1 187 ADTYIALGDVSLETEKFDQAITDYSAGLTL 216
                 67899*******************998876 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.047
       TPR_2  14 lgdyeeAleafekAl 28 
                 +g++ +A+ + e+Al
  CDO68408.1 243 SGRLGDAITHAERAL 257
                 7999**********9 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3    0.0067        12      13      31 ..      34      52 ..      32      55 .. 0.89
   2 ?   -2.2   0.1       3.9   7.1e+03       1      12 [.      64      75 ..      64      77 .. 0.81
   3 ?   -2.7   0.1       5.7     1e+04      18      26 ..     166     174 ..     165     177 .. 0.78
   4 ?    9.0   0.0     0.001       1.8       1      31 [.     187     217 ..     187     219 .. 0.91
   5 ?    1.3   0.0      0.28     5e+02       1      29 [.     229     258 ..     229     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0067
                HTT-HHHHHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekaleld 31
                 l++ye+++e y  ale++
  CDO68408.1 34 ALKKYEQSVEHYASALEIA 52
                79***************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.9
                CCHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiyl 12
                ae+y+  g+++l
  CDO68408.1 64 AELYFAYGKALL 75
                689999999886 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.7
                 HHHHHHHHH CS
       TPR_8  18 eeAkeyyek 26 
                 + A + yek
  CDO68408.1 166 DLARAIYEK 174
                 679999998 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.001
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleld 31 
                 a+ y  lg++ l+++++++A+  y   l+l+
  CDO68408.1 187 ADTYIALGDVSLETEKFDQAITDYSAGLTLK 217
                 689*********************9988876 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.28
                 CCHHHHHHHHH.HHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiy.lklgdyeeAkeyyekale 29 
                 aea+y+l+ ++ l+ g++  A+   e+al+
  CDO68408.1 229 AEAHYKLSIVLdLTSGRLGDAITHAERALD 258
                 68999999888899************9986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.2      0.31   5.6e+02       3      58 ..      34      92 ..      32      97 .. 0.69
   2 ?    4.4   0.1      0.03        54      26      46 ..     122     143 ..     108     144 .. 0.76
   3 ?   11.0   0.1   0.00025      0.46      10      41 ..     168     196 ..     155     197 .. 0.73
   4 ?    1.2   0.1      0.29   5.3e+02       3      19 ..     242     258 ..     223     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.31
      TPR_19  3 aegdyaeAlalleqalqedpk.naearllLAeallalgq..ldeAealLdalpeedpdd 58
                a ++y++ ++++++al+ + k ++e +   Ae+++a g   l+ A+a  + l++++pdd
  CDO68408.1 34 ALKKYEQSVEHYASALEIATKkYGEKAFETAELYFAYGKalLENAIAQSSVLGKQEPDD 92
                56788999999999999966657777777788888876533566666666666666665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.03
      TPR_19  26 earllL.AeallalgqldeAea 46 
                 +++ +L Aea+ a+ +ld+Ae+
  CDO68408.1 122 DVAVDLfAEAQKAAEELDAAEQ 143
                 4444444*************97 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00025
      TPR_19  10 AlalleqalqedpknaearllLAeallalgql 41 
                 A a++e+      +++e++l LA+ ++alg++
  CDO68408.1 168 ARAIYEKQ---QEDSDEIKLKLADTYIALGDV 196
                 45555553...6679***************96 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.29
      TPR_19   3 aegdyaeAlalleqalq 19 
                  +g++ +A+ + e+al+
  CDO68408.1 242 TSGRLGDAITHAERALD 258
                 57899999999999875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.04        71      13      34 ..      36      57 ..      32      59 .. 0.81
   2 ?   -3.1   0.0       6.2   1.1e+04       6      14 ..     168     177 ..     166     181 .. 0.58
   3 ?    4.7   0.0      0.02        35       1      29 [.     189     215 ..     189     225 .. 0.86
   4 ?   -0.6   0.1      0.96   1.7e+03      13      29 ..     244     258 ..     227     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.04
       TPR_7 13 GdyeeAielyeqsLaltkdped 34
                 +ye+ +e+y  +L+++   ++
  CDO68408.1 36 KKYEQSVEHYASALEIATKKYG 57
                58**********9999877665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
       TPR_7   6 arl.ysrlGd 14 
                 ar+ y+++++
  CDO68408.1 168 ARAiYEKQQE 177
                 4444666655 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.02
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 ++ +L+++  +  ++++Ai+ y +  +lt
  CDO68408.1 189 TYIALGDVSLETEKFDQAITDYSA--GLT 215
                 6889***************99977..555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.96
       TPR_7  13 GdyeeAielyeqsLalt 29 
                 G+  +Ai++ e++L  +
  CDO68408.1 244 GRLGDAITHAERAL--D 258
                 55557888888844..3 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.75   1.3e+03      11      31 ..      32      52 ..      27      74 .. 0.77
   2 ?   -2.5   0.0       7.5   1.3e+04       2      13 ..      65      76 ..      64      78 .. 0.77
   3 ?    0.8   0.2      0.65   1.2e+03       8      21 ..     129     142 ..     105     150 .. 0.64
   4 ?    0.2   0.0         1   1.9e+03      23      42 ..     167     187 ..     155     189 .. 0.57
   5 ?    2.6   0.0      0.17   3.1e+02       3      28 ..     189     214 ..     180     219 .. 0.63
   6 ?    9.2   0.5    0.0014       2.5       2      29 ..     230     258 ..     229     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.75
      TPR_14 11 llalGdpdeAiallrralala 31
                 +al +++++++++  al+ a
  CDO68408.1 32 AFALKKYEQSVEHYASALEIA 52
                567889999999999999865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.5
      TPR_14  2 eallalaealla 13
                e++ a+++all+
  CDO68408.1 65 ELYFAYGKALLE 76
                788899999876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.65
      TPR_14   8 aeallalGdpdeAi 21 
                 aea  a++++d+A+
  CDO68408.1 129 AEAQKAAEELDAAE 142
                 44444444444444 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1
      TPR_14  23 llrrala.laPddaeawllla 42 
                 l+r++ + ++ d++e+ l la
  CDO68408.1 167 LARAIYEkQQEDSDEIKLKLA 187
                 333322224566677777776 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.17
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                  + al+++ l+ +++d+Ai+ + + l
  CDO68408.1 189 TYIALGDVSLETEKFDQAITDYSAGL 214
                 34455555555555999988777765 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.0014
      TPR_14   2 eallalaeal.lalGdpdeAiallrrala 29 
                 ea+++l  +l l++G++ +Ai++++ral+
  CDO68408.1 230 EAHYKLSIVLdLTSGRLGDAITHAERALD 258
                 899***9998789**************86 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.3     0.004       7.3       2      46 ..      27      76 ..      26      82 .. 0.78
   2 ?   -1.6   0.5       2.5   4.4e+03      44      53 ..     132     141 ..     123     154 .. 0.53
   3 ?    1.6   0.0      0.26   4.7e+02       2      18 ..     192     208 ..     165     217 .. 0.50
   4 ?    7.3   0.1    0.0043       7.6       2      62 ..     192     258 ..     191     263 .. 0.71
   5 ?    4.0   0.1     0.046        82       9      27 ..     242     260 ..     239     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.004
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalr 46
                ++a+ a+++++y++ ++ +  al+ + +        +ae ++++g a+l+
  CDO68408.1 27 EHAKRAFALKKYEQSVEHYASALEIATKKYGekafeTAELYFAYGKALLE 76
                58999999999999988777777766555556666999999999999886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.5
      TPR_16  44 alrqgrlaeA 53 
                   ++ +l++A
  CDO68408.1 132 QKAAEELDAA 141
                 2223333333 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.26
      TPR_16   2 alaraalragdyddAaa 18 
                 al++  l+  ++d+A+ 
  CDO68408.1 192 ALGDVSLETEKFDQAIT 208
                 33333333444444444 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0043
      TPR_16   2 alaraalragdyddAaaal.eaalkrdpssPd....aaeAllllgdaal.rqgrlaeAaalyraalr 62 
                 al++  l+  ++d+A+  +   ++ +    P+     aeA++ l  ++    grl +A+   ++al+
  CDO68408.1 192 ALGDVSLETEKFDQAITDYsAGLTLKTELLPLssrqIAEAHYKLSIVLDlTSGRLGDAITHAERALD 258
                 5666667777888888888444444444444466668999999999999555999999999999986 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.046
      TPR_16   9 ragdyddAaaaleaalkrd 27 
                  +g+  dA+  +e+al++ 
  CDO68408.1 242 TSGRLGDAITHAERALDSV 260
                 68999999*****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1229  (0.0685482); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2973.09
//
Query:       CDO68409.1  [L=458]
Description: hypothetical protein BN946_scf184815.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-17   61.7   8.0    1.5e-12   46.8   6.9    2.5  2  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   6.9   8.4e-17   1.5e-12      29     293 ..       5     285 ..       1     298 [. 0.87
   2 !   13.2   0.0   1.3e-06     0.023     375     431 ..     333     389 ..     316     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 8.4e-17
                 HHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHH.HHHHHHHHHHHH.HHH.HSEEE............ CS
      Aldedh  29 edvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eve.eaidvlryyael.aek.legev............ 111
                 + ++++ +aAk+af++ + +p +eR + L+++++ le+ k+ +  +  ++     +e +a  ++ + ++ l+++ +   +  l+g +            
  CDO68409.1   5 NAAESIAKAAKAAFEESQLIPSSERIKALQEIRRELEASKDAILSANRADLAAAQQEVDAgRMSsSLLKRLDLTKGDkWDSmLQGVTdvaelpdptgvv 103
                 5689999********************************************999999998655525566666665432333366644778877777776 PP

                 ..EEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 112 ..lps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealveh 203
                   ++  +++ + + +  P+Gv ++I  ++    +++  +a a+  GN+ +lK  +e++ +a ll ++++ a     + ++ ++ +++  +ev++ l  +
  CDO68409.1 104 tyANElDDDLELYRVSCPIGVLLVI--FEARPEVVVNIAALAIKSGNAAILKGGKESAQTAQLLSKAIQTAlsrtAISADYIQAIQT-RAEVSALLELD 199
                 54333346777777777*******9..89*****************************************999999*********99.99********* PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHH CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaa 293
                 + +d+v   Gs++  r+i+++      +v+    G  ++ + e+aD++kav+ +v + + +    C aa+ l+++e +   +  ++++a+
  CDO68409.1 200 QYIDLVIPRGSNSLVRNIQNSTR---IPVMGHADGLCSVYIDESADVKKAVRIVVDSKTDYP-AACNAAETLILNERVLSTVWPEVAKAL 285
                 *******************9877...9*******************************9987.79***********99999888887765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.3e-06
                 EEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--T CS
      Aldedh 375 lsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaa 431
                 lsv +  ++ eai++ N+     + +++t+d++ a ++ + ++     +N st++a 
  CDO68409.1 333 LSVKTLPSLSEAIRWINAHSSHHTDSIVTEDERAASTFCRGVDSAGTFVNASTRFAD 389
                 7899999*******************************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3416.11
//
Query:       CDO68410.1  [L=534]
Description: hypothetical protein BN946_scf184815.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-62  210.6   0.1    1.5e-60  204.9   0.1    2.2  1  FGGY_N           FGGY family of carbohydrate kinases, N-termi
    7.2e-60  202.1   1.1    1.2e-59  201.4   1.1    1.4  1  FGGY_C           FGGY family of carbohydrate kinases, C-termi
  ------ inclusion threshold ------
       0.19   12.0   0.6        0.5   10.6   0.1    2.0  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.1   2.4e-64   1.5e-60       2     245 .]      10     277 ..       9     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 2.4e-64
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHC...T.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqa...gisekqikaIgisgqreglvllDknd.kpLynai 96 
                 + +lDcGttst+++++d+ ++++a++q+e+++++p+++w+eqd++e+++++  +i ++ +++   g  ++ +k Igi++qre++v++ +++ kpL + i
  CDO68410.1  10 VGSLDCGTTSTRFLIFDKYANILAQHQIEYPQYYPEPSWHEQDADELMESCDVCISEASKALeaaGWAKESVKVIGITNQRESAVAWSRKTgKPLCRLI 108
                 5689***************************************************98877776669**********************9999******* PP

                 -TT--TTHHHHHHHHHTTCH.................CCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT.....--E CS
      FGGY_N  97 lwkdrrtaeiveklkeegne.................kklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg.....qfv 169
                 +w d rt+++v + ++++++                 k+l++ +gl++st+f++ kl+W+ +++  v+++ e    +f+++++++ +rLtg      ++
  CDO68410.1 109 VWDDSRTKNTVAHFEQKLKNvgievapgqfkkgdegiKALRQLSGLPISTYFSAIKLRWMIDHYDHVRKAHEeddlLFGTVESWIVYRLTGgatknLHI 207
                 **********988776432212222222222222233899************************999999889********************9999** PP

                 EEHHHHCTTTSEETTTTEE-HHHHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 170 tdvtnasesmlfnikklewdeellailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 tdvtnas++ l+n+k+l+wd+ ll+++ i+ ++LPk+v+sse++gel        G  +gv + g++gDqqaa++G
  CDO68410.1 208 TDVTNASRTLLMNLKTLKWDPALLKFFEIKDSVLPKIVSSSEVYGELA------YGPLKGVKIGGIAGDQQAALVG 277
                 *********************************************985......45567899************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.4   1.1     2e-63   1.2e-59       1     197 [.     286     477 ..     286     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.4 bits;  conditional E-value: 2e-63
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva...gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpaf 95 
                 ak+++GT+ fll+ +g++ v s+hgll++va   g+d+kp+yalegsiavags+v+wl+d  ++   ++ a+ev ++la     ++v+d+gg +fv+af
  CDO68410.1 286 AKCTYGTGAFLLFcTGEDIVQSAHGLLSTVAyqdGSDSKPVYALEGSIAVAGSAVKWLRDSMKM---VSTAAEV-NDLA-----DSVPDTGGTYFVTAF 375
                 79***********9999999***********999999************************999...******9.****.....9************** PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilA 194
                 sgl apywdp+a g ++gls++tt+ahia+A+lea a+q+raile+++ ds+ +l+ l vdGG+++ d +m++lAdi g +V rp+++e+talG A+lA
  CDO68410.1 376 SGLLAPYWDPGAAGLLIGLSAYTTPAHIALATLEANAFQTRAILESMKLDSKTDLKHLKVDGGMTNGDKVMKVLADIGGFTVIRPEMRESTALGSALLA 474
                 *************************************************************************************************** PP

      FGGY_C 195 ava 197
                 + a
  CDO68410.1 475 GSA 477
                 987 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   8.3e-05       0.5       2      42 ..      21      61 ..      20      63 .. 0.92
   2 ?   -3.3   0.1       1.9   1.1e+04      45      59 ..     164     176 ..     161     184 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.3e-05
  SANT_DAMP1_like  2 aFakfnkkvevpeytdeeYeellkeedWtkeetdyLfdlck 42
                     +F  f+k ++++   + eY ++  e++W +++ d L++ c+
       CDO68410.1 21 RFLIFDKYANILAQHQIEYPQYYPEPSWHEQDADELMESCD 61
                     57889999*****************************9885 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
  SANT_DAMP1_like  45 dlrfvviaDryelek 59 
                       lr+++  D+y++ +
       CDO68410.1 164 KLRWMI--DHYDHVR 176
                      577765..8887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3481.38
//
Query:       CDO68411.1  [L=617]
Description: Glycoside Hydrolase Family 47 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-120  403.0   0.0   2.1e-120  402.8   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.8   0.0  1.2e-124  2.1e-120       1     457 [.      81     601 ..      81     602 .. 0.88

  Alignments for each domain:
  == domain 1  score: 402.8 bits;  conditional E-value: 1.2e-124
                     HHHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----..........S.SS.EEEHHHHHHHHHH CS
  Glyco_hydro_47   1 afkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfd..........tsdskevsvFEttIRyLG 85 
                     af+h+++gY ++A g DelrPls+ g + f+g+ +t+ DsLdt+l+mgl++efe+a+  v+ + +f+           s s   + FEt+IRyLG
      CDO68411.1  81 AFRHAYQGYLEHANGFDELRPLSNVGVNNFNGWNVTMYDSLDTMLLMGLYDEFEAALPVVA-QGNFTrlrstpdtnpWSRSGYAPFFETVIRYLG 174
                     79***********************************************************.7777655555554442234456*********** PP

                     HHHHHHHHH.S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHH CS
  Glyco_hydro_47  86 GLlsaydlsekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkale 180
                     GLlsay ls  +e++ll++A ela  L pAF+  +g  + ++ +  r a++++++    +lAe++s +lE+t+ ++ T +k+ +d +  + + l+
      CDO68411.1 175 GLLSAYALS--GEKLLLDRASELATLLEPAFNPATGWEL-TYGW--RAAVTPSQS---GMLAEIASCQLEWTYAAHATVNKTHYDRVSDLLETLA 261
                     *********..*********************7777654.4667..444444333...489********************************** PP

                     CHCC.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HH.HHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTTCTS CS
  Glyco_hydro_47 181 elqektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeq.yrkmyeealdaikkhllfrpskkkeddllfvgevtsteeg 274
                     ++  +++  g++p+  +++tgk v+e+ s+ga +DS  EYllKqyll+g+++++   +my+ + +++ ++ll+   +++ ++ll+v++  s+++ 
      CDO68411.1 262 NAM-EERKGGMFPTGWHLNTGKPVSESRSVGAAADSAHEYLLKQYLLTGKQQDIeSLEMYMLTTNEVLTRLLYL--TPN-RELLYVTDT-SGSKF 351
                     966.4669****************************************987665499*************8877..556.689999995.68889 PP

                     .EE-EEEGGGGHHHHHHHHHHHTT-H.............................HHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS..... CS
  Glyco_hydro_47 275 klspeidhLscFlgGllalgakllek.............................eedlelAkkltegcvkayeatktglmPEifevkpces... 337
                       +++++hL+cF++Gllalga++++                                ++  A+ l+ +c+ +y++ ++gl++E++ ++++ +   
      CDO68411.1 352 APAHRLEHLACFFPGLLALGAHAVDLnaafagidrtklnaearrqydllsqydvrALHMAAAEGLATSCWLMYADQPSGLGAEVVDMEHTVRdgs 446
                     99*******************9996669**************************999*******************************7655333 PP

                     ......S-ECTSSSSEEE-.........................................GGG--B----HHHHHHHHHHHHH--THHHHHHHHH CS
  Glyco_hydro_47 338 ...aeecewneekkdealk........................................riedrkyllRPEaiESlfylYritgdekyrevgwem 389
                        a        k   +++                                         ++++ y lRPE+iES++++++ tg++ +re gw +
      CDO68411.1 447 skdA--------KGILWIDavegwrnkgrtgplpgtdekkpipytlsakerapkapwdyVVKRHDYFLRPETIESIYIMWKTTGNPVWRERGWAI 533
                     3330........33333445566667777777777777777888888888888888887778999****************************** PP

                     HHHHHHHCEETTEE--ECETTSSS-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE CS
  Glyco_hydro_47 390 fealekatktesgysaledVtkeepekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplk 457
                     fea+e+ +kt sgy++l+ Vt++++ ++D + S++laEtlKYlYLlFs+ed ++ld++VfnTeAHpl+
      CDO68411.1 534 FEAIEREAKTPSGYASLKTVTQSPAPQSDDQPSYFLAETLKYLYLLFSNEDPVPLDKWVFNTEAHPLP 601
                     *******************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3941.17
//
Query:       CDO68412.1  [L=424]
Description: hypothetical protein BN946_scf184815.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-55  188.1   0.1    2.3e-55  187.5   0.1    1.3  1  ANTH            ANTH domain
    0.00014   21.9   0.0    0.00034   20.7   0.0    1.7  1  ENTH            ENTH domain
  ------ inclusion threshold ------
       0.11   12.4   1.2        1.8    8.5   0.1    2.4  2  FerA            FerA (NUC095) domain
       0.14   11.6   1.9         10    5.5   0.0    3.0  2  ABC_transp_aux  ABC-type uncharacterized transport system
       0.15   12.0   0.1       0.33   10.9   0.1    1.6  1  F-box           F-box domain


Domain annotation for each model (and alignments):
>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.1   6.4e-59   2.3e-55       2     277 .]       4     311 ..       3     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 6.4e-59
                 HHHHHHHHT-SSS---HHHHHHHHHHHCST.TS-HHHHHHHHHHHCTSS.SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHSTH CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltss.rekvaalvwalsrrlkltrnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsssk 99 
                 +e+ v+ A++ +++Ppk k+   i+ +t+s    v  + +al+ r ++  n +v++KaLi++H ++r G ++   ++ls+++ + +l n+ss   +s +
  CDO68412.1   4 FEKTVKLACKPKAAPPKSKYLDPIIAATWSeDGAVHDVCKALAPRFREP-NVIVVFKALIVLHTMIRNGATDNVLQYLSSSD-VLKLRNVSS---GSWE 97 
                 6899**************************9999***************.**********************9999999887.899999999...5567 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS--S......................................TTSHCC....C--HHHHHHHHHH CS
        ANTH 100 swdysafiraYakyLderlefhrklkvdkgelereeeg.................................slvavedpner...ktlsmeklldkiek 162
                 ++   ++ ++YakyLd+r++ +r+lk+d ++++ e ++                                 +l+ +++ + r    ++  + ll++ + 
  CDO68412.1  98 GYNAPQNLQNYAKYLDTRIRAYRELKHDAIRVQSETNRdmrnsqaidedmertgkgskrgknappsstgnsTLQRSKTLAGRklrVMTVEKGLLRETKI 196
                 899999**********************8444444444666688999999999999************9984444444444466456777789****** PP

                 HHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG.S--GG CS
        ANTH 163 lqklldrllkckptgnalsnevilaalvllvkeslklYkaineglinLlekffelskheadkaldiykrfskqfeelkeFyevckslgilrsleiPele 261
                 +qk++d+l +c++  ++l++e+ ++al++lvk++l l++a+neg+in+le++fe+s+ +a++al+iyk f kq+e+++e++ v+k+l+ l +  iP+l+
  CDO68412.1 197 VQKMVDALVECRFYLDDLEDELNVTALKMLVKDLLILFQACNEGVINVLEHYFEMSHIDAEEALSIYKHFCKQTERVVEYLGVAKKLQNLLNVPIPNLR 295
                 *************************************************************************************************** PP

                 GS-CHHCCCCCHHHHC CS
        ANTH 262 kippnllealeeflrd 277
                 ++p +l ++lee+l+d
  CDO68412.1 296 HAPVSLASSLEEYLND 311
                 *************986 PP

>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.4e-08   0.00034       2      82 ..       2      82 ..       1     122 [. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.4e-08
                -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSH.HHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-H.HHHHHH.H CS
        ENTH  2 seteskvreatnndpwGpsnkllteiarltysk.kelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGse.qvidwl.k 82
                +++e++v+ a + +   p++k l+ i+ +t s+   + ++ + +  r+   ++ ++ +v+KaL++++ +++nG + +v++ l +
  CDO68412.1  2 TSFEKTVKLACKPKAAPPKSKYLDPIIAATWSEdGAVHDVCKALAPRF---REPNVIVVFKALIVLHTMIRNGATdNVLQYLsS 82
                789*****************************9899***********9...999*******************98455555532 PP

>> FerA  FerA (NUC095) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.054   1.9e+02      40      58 ..     110     128 ..     102     133 .. 0.82
   2 ?    8.5   0.1   0.00051       1.8      13      42 ..     195     223 ..     191     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.054
        FerA  40 teLDrqlkklRkaaleqIk 58 
                   LD++++ +R+ + + I+
  CDO68412.1 110 KYLDTRIRAYRELKHDAIR 128
                 57*********99988886 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00051
        FerA  13 slvlklLdqlieDcskpLpelegkpnvteL 42 
                  +v+k++d l+e c+++L +le++ nvt+L
  CDO68412.1 195 KIVQKMVDALVE-CRFYLDDLEDELNVTAL 223
                 679999999997.****************9 PP

>> ABC_transp_aux  ABC-type uncharacterized transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0029        10      34      69 ..      93     131 ..      71     165 .. 0.75
   2 ?    3.1   0.5     0.015        53      24      81 ..     202     258 ..     190     384 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0029
  ABC_transp_aux  34 senla...lppelkalekevkdlLeeyaaysggkisvef 69 
                     s++ +    p+ l++++k+++  ++ y++ +++ i+v+ 
      CDO68412.1  93 SGSWEgynAPQNLQNYAKYLDTRIRAYRELKHDAIRVQS 131
                     555455567999********************9999975 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.015
  ABC_transp_aux  24 eepvtikvylsenlalppelkalekevkdlLeeyaaysggkisvefidpspneeeeee 81 
                     +  v+ ++yl++ + +   + al+  vkdlL  ++a + g i+v  ++ +    ++ee
      CDO68412.1 202 DALVECRFYLDDLE-DELNVTALKMLVKDLLILFQACNEGVINVLEHYFEMSHIDAEE 258
                     55566666666665.3445555666666666666666666555544444432222222 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.3e-05      0.33      13      32 ..      75      94 ..      73      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.3e-05
                HHHHTS-HHHHHHHCTT-HH CS
       F-box 13 hILerLplsdllalrrVSkg 32
                ++L++L+ sd+l lr VS g
  CDO68412.1 75 NVLQYLSSSDVLKLRNVSSG 94
                89****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2818.86
//
Query:       CDO68413.1  [L=467]
Description: hypothetical protein BN946_scf184815.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.37s 00:00:01.14 Elapsed: 00:00:00.58
# Mc/sec: 2440.93
//
Query:       CDO68414.1  [L=78]
Description: hypothetical protein BN946_scf184815.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 526.13
//
Query:       CDO68415.1  [L=987]
Description: hypothetical protein BN946_scf184815.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-48  163.4   2.4    3.8e-48  163.4   2.4    2.3  3  E1-E2_ATPase  E1-E2 ATPase
    1.6e-30  107.0   0.2    3.6e-30  105.8   0.2    1.6  1  Hydrolase     haloacid dehalogenase-like hydrolase
    7.4e-28   96.8   0.0    1.6e-13   50.9   0.0    2.6  2  HMA           Heavy-metal-associated domain
     0.0004   20.2   0.4      0.028   14.2   0.2    2.4  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.14   11.2   1.9        2.2    7.2   0.3    2.4  2  7TM_GPCR_Srh  Serpentine type 7TM GPCR chemoreceptor Srh
        1.5    9.7   4.4        1.6    9.6   0.4    3.0  3  DGF-1_4       Dispersed gene family protein 1 of Trypanosoma 


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   2.4   1.3e-51   3.8e-48       2     181 .]     350     550 ..     349     550 .. 0.94
   2 ?   -2.9   0.0       1.3     4e+03      75     103 ..     576     604 ..     574     616 .. 0.81
   3 ?   -4.3   0.1       3.7   1.1e+04     155     172 ..     886     903 ..     870     904 .. 0.77

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 1.3e-51
                   SS--EEEEE-TT....S-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTT CS
  E1-E2_ATPase   2 llpptakvirdg....teeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtel 94 
                   l+p++a+++ d     +e++i+++ +++GD v+l +g++vpaDg ++ g+++vdesa+TGE lpv k+ gd+v++Gtv+  g++ ++Vt+ g+dt l
    CDO68415.1 350 LTPSMATIYTDAptctQEKKIPTELVQVGDTVKLVPGEKVPADGTVLRGTSTVDESAVTGEPLPVLKQPGDSVIGGTVNGLGTFDMIVTRAGKDTAL 446
                   67888888877655557888***************************************************************************** PP

                   TTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT................HHHHH.HHHHHHHHS-TTHHHHHHHHHHHH CS
  E1-E2_ATPase  95 gkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla................eallr.alallvaaiPcaLplavplalalg 174
                   ++i++lveea+ +k+p+q ++dk+++++vp+v+ ++ll+f ++l++ + +                    l+  ++++v+a+PcaL+l +p+a+++g
    CDO68415.1 447 AQIVKLVEEAQTSKAPIQAFADKVAGYFVPAVISLSLLTFTAWLIISHVVSedalpapfrmhgasklAVCLQlCISVVVVACPCALGLSTPTAIMVG 543
                   *********************************************99988899999999****9999555556************************ PP

                   HHHHHHT CS
  E1-E2_ATPase 175 arrlakk 181
                   ++  ak+
    CDO68415.1 544 TGMGAKN 550
                   *999985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
                   EEEE-EEEEEEEE-TTTSTTTTTSTTS-- CS
  E1-E2_ATPase  75 vvvsgeakavVtatgedtelgkiarlvee 103
                   +v++g++++v+ta + ++  + + +l+e 
    CDO68415.1 576 TVTQGKLTVVATAWAPSSDHSDLHALTEG 604
                   6899********99999988877777765 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 3.7
                   HHHHS-TTHHHHHHHHHH CS
  E1-E2_ATPase 155 lvaaiPcaLplavplala 172
                    v  iP a++ ++pl l+
    CDO68415.1 886 NVLGIPLAMGFFLPLGLS 903
                   588999999999999887 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.2   1.2e-33   3.6e-30       1     209 [.     566     832 ..     566     833 .. 0.87

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 1.2e-33
                 SSEEEEESBTTTBCHH.HHHHHHHHHH.................................CHHHHHHHHHHHHCHHHHHHHHHHHHH.........HHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxx RF
   Hydrolase   1 iktvvfDkdGTLttge.psvedvivsa.................................alalaaaletgsehpigkalvaaakar.........sga 56 
                 ik +v+Dk+GT+t+g+  +v ++++                                    +a+ aa+e  sehp++ka++ + k++         +  
  CDO68415.1 566 IKRIVLDKTGTVTQGKlTVVATAWAPSsdhsdlhaltegrgslddaplttkcvgnvtraeVIAMVAATEARSEHPLAKAVAVYGKELlnksmvpisEVI 664
                 788*************7666666666688899999999999999999999999966555555555555555**********************985555 PP

                 HHHHHHETTTE..............HHHHTHHHHHHHH...HCHHHHHHHHHHHHHHCHHHHHH.....TTHHHHHHHHHHTHHBHTTHHHHHHHHHHT CS
                 xxxxxxxxxxx..............xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  57 ltgfatfigrg..............ayaigkpewltal...dippdlgaaigsaqsqgrtvall.....qaralavftiadplkvkpeaaeavasLkaa 133
                 +tgf+ ++g g              ++ +g+ +++ +    + p+ l a ++++ ++grt++++      +  + v++ia ++ ++p  + a+++L+++
  CDO68415.1 665 ITGFESVTGAGvraeislpgskgqyVVYVGNARFILQDgksELPSVLAAFDSEEAQHGRTSIFVslapsGKPPVPVLAIALSDAPRPSSVYAIKALQDM 763
                 5********************************999999*************************99998556666666665555*************** PP

                 TEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...STTTSHHHHHHHHHHHTST.GGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 134 gievvlltgdnpetaeraanqlGddyfdaviasdiet...vakpspegkvaaireLqgk.peevamVGDgvnDaaalaaA 209
                 g+ev ++tgd++ ta ++a+q+G           i+     a  sp+gk  ++ eL +k +  vamVGDg+nD++ l aA
  CDO68415.1 764 GVEVNMMTGDSKGTALAVAKQVG-----------IKPehvWANMSPKGKASVVTELMEKyGGGVAMVGDGINDSPSLVAA 832
                 ***********************...........6666789***************7555777**************998 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   5.3e-17   1.6e-13       2      62 .]      46     106 ..      45     106 .. 0.96
   2 !   43.4   0.0   1.1e-14   3.4e-11       1      62 []     119     180 ..     119     180 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 5.3e-17
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 +r++gm+C++C+ ++e+ L + pg++svkv l + + +Ve+d++  ++ ki+++i+++g++
  CDO68415.1  46 LRIEGMTCGACVESIESMLRSQPGIHSVKVALLAERGVVEYDPAVWTPDKIVNEISDIGFD 106
                 79*******************************************778***********96 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 1.1e-14
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 t+r+ gm   +C ++vek L ++pgV+sv v+lat t+ Ve+d +++ +r+++e ie++g++
  CDO68415.1 119 TLRIYGMISLSCTSTVEKELGAMPGVSSVAVSLATETCKVEFDRTMVGPRELVERIEEMGFD 180
                 6788999999**************************************************96 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.014        43      18      56 ..     751     789 ..     746     797 .. 0.87
   2 !   14.2   0.2   9.2e-06     0.028     192     247 ..     805     857 ..     798     865 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCS CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgldl 56 
                  ++++ aik l++ g++v   TG s  ++l v++++g++ 
   CDO68415.1 751 PSSVYAIKALQDMGVEVNMMTGDSKGTALAVAKQVGIKP 789
                  67889*******************************983 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.2e-06
                  HHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3 192 lkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247
                  +++l+++++     v+ +GDg ND + L aa +g+A+g+++  +++aAd v    +
   CDO68415.1 805 VTELMEKYGG---GVAMVGDGINDSPSLVAASVGIALGSGTSVAIEAADIVLMRSD 857
                  5555555554...47789*******************************9986665 PP

>> 7TM_GPCR_Srh  Serpentine type 7TM GPCR chemoreceptor Srh
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.017        52      50     112 ..     277     337 ..     267     345 .. 0.88
   2 ?    7.2   0.3   0.00073       2.2     195     254 ..     477     534 ..     438     542 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
  7TM_GPCR_Srh  50 sallDltlslltipylllPalagyplGllselgvpteiqlyllvtllalvgvsiillFenRys 112
                   sa +D+++ l t   +++ + a++   l ++++  +  ++++  +++ ++ vs+  ++enR +
    CDO68415.1 277 SATMDVLIALGTSAAYIYSVGAMCFAALNRDIDYHP--MVFFDTSTMLIMFVSMGRFLENRAK 337
                   78899999999999999********99999995555..88889999999************75 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00073
  7TM_GPCR_Srh 195 lllliqilffvvlliyyllkskkkslSkkTrklqkkflialiiQvaipllviliPliyll 254
                   +++ +++l+f++ li++ + s       + ++++     a+++Q++i ++v+++P+++ l
    CDO68415.1 477 AVISLSLLTFTAWLIISHVVS--EDALPAPFRMHGASKLAVCLQLCISVVVVACPCALGL 534
                   444444444444444444444..345567899***********************99876 PP

>> DGF-1_4  Dispersed gene family protein 1 of Trypanosoma cruzi region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.85   2.5e+03      45      66 ..     113     134 ..     104     146 .. 0.81
   2 ?   -3.7   0.1         6   1.8e+04      17      29 ..     187     199 ..     182     206 .. 0.70
   3 ?    9.6   0.4   0.00055       1.6      16      64 ..     341     387 ..     334     395 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.85
     DGF-1_4  45 qygatetlqvtetvallptrtp 66 
                 + + t tl++   ++l+ t t 
  CDO68415.1 113 TRSDTITLRIYGMISLSCTSTV 134
                 4577999999999999999885 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6
     DGF-1_4  17 atLtetRsltptw 29 
                 +  t+ Rslt t 
  CDO68415.1 187 EDATQLRSLTRTK 199
                 5568888888775 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00055
     DGF-1_4  16 tatLtetRsltptwtatp.ptlsttqYsptqygatetlqvtetvallptr 64 
                  a Lt+  +ltp++ + +  +++ tq     + +te  qv +tv l+p  
  CDO68415.1 341 SAALTDLMALTPSMATIYtDAPTCTQEK---KIPTELVQVGDTVKLVPGE 387
                 5889999999999885553444555444...488************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6632.63
//
Query:       CDO68416.1  [L=1604]
Description: hypothetical protein BN946_scf184815.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 10362.49
//
Query:       CDO68417.1  [L=329]
Description: hypothetical protein BN946_scf184815.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-09   36.6   0.0    1.3e-08   35.8   0.0    1.4  1  Myb_DNA-bind_3   Myb/SANT-like DNA-binding domain
    1.7e-08   34.7   0.1    3.5e-08   33.7   0.1    1.5  1  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain
    0.00094   19.2   0.3     0.0045   17.0   0.1    2.2  2  Myb_DNA-bind_5   Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
      0.055   13.7   0.7       0.14   12.4   0.7    1.8  1  Myb_DNA-binding  Myb-like DNA-binding domain
      0.067   13.5   0.0       0.13   12.6   0.0    1.5  1  TAL_effector     TAL effector repeat
      0.098   12.3   0.0       0.15   11.7   0.0    1.2  1  Reprolysin_4     Metallo-peptidase family M12B Reprolysin-lik


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   4.2e-12   1.3e-08       1      96 []      37     136 ..      37     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.2e-12
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefna..ktgakytkkqlknrlkklrkeyklvkellersg.fsWDpttktvtAd..d 90 
                     +W++eeekil+d l+   k+    ++  ++k  w+ +++++ a   +ga +t +++kn++ +l+k y ++  l +  + +++D+++    ++  +
      CDO68417.1  37 HWTEEEEKILIDFLAPDGKAAAA-DGANYRKPVWEAAARKLGAlpCKGAPKTWQVCKNKWGRLKKAYWAIVVLENYGSgLTYDEEKGAGITEdmE 130
                     6****************999999.8******************99899**************************99888******9986666467 PP

  Myb_DNA-bind_3  91 evWkey 96 
                     e+W++y
      CDO68417.1 131 EIWAAY 136
                     999998 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   1.2e-11   3.5e-08       3      68 ..      37     103 ..      35     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.2e-11
                     SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHH...HC----HHHHHHHHHHHHHHHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawgerilelrfqergkkrnkklWeevaeamae...rgykrspeqCkeKienLkkrYk 68 
                     +Wteee k Li++   +   +   ++ + r+  +We+ a+++ +   +g +++ + Ck+K+  Lkk Y 
      CDO68417.1  37 HWTEEEEKILIDFLAPDGKAAA-ADGANYRKP-VWEAAARKLGAlpcKGAPKTWQVCKNKWGRLKKAYW 103
                     8*************99766665.4579****9.********976233699*****************96 PP

>> Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.5e-06    0.0045       3      70 ..      36     100 ..      35     102 .. 0.87
   2 ?   -2.1   0.0       1.4   4.1e+03      23      61 ..     215     253 ..     210     256 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
  Myb_DNA-bind_5   3 knfseeEkevLvelveknksilegkksdaatnkaKsraWeeiaervna..lgsveRtaeelkkkwedlkr 70 
                     ++++eeE+++L++++  +     gk+++a   ++++ +We  a+++ a  + + ++t++  k kw +lk+
      CDO68417.1  36 AHWTEEEEKILIDFLAPD-----GKAAAADGANYRKPVWEAAARKLGAlpCKGAPKTWQVCKNKWGRLKK 100
                     68************9997.....6677778899***************544555**************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
  Myb_DNA-bind_5  23 ilegkksdaatnkaKsraWeeiaervnalgsveRtaeel 61 
                     +l g + ++a   + ++a + + e++  ++++ R++++l
      CDO68417.1 215 VLHGASTKKARVSQGAQALQAVGEKLDDFNTILRSLVAL 253
                     566666666666666777777777777777777777776 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   4.6e-05      0.14       3      42 ..      37      95 ..      35      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                     SSBHHHHHHHHHHHHH...........HTTC.HHHHHHHHTS.......S-HHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkk...........hGnr.WkkIaerlgg.......Rtekqcrsrw 42
                      WteeE+++L++ ++            + +  W++ a++lg        +t   c+++w
       CDO68417.1 37 HWTEEEEKILIDFLAPdgkaaaadganYRKPvWEAAARKLGAlpckgapKTWQVCKNKW 95
                     6***********99985555555555555226998888888446667888888888888 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05      0.13       3      18 ..     229     244 ..     229     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
                   HHHHHHHHHHHHHHHH CS
  TAL_effector   3 GaQALeAVlahgpaLr 18 
                   GaQAL+AV + +++++
    CDO68417.1 229 GAQALQAVGEKLDDFN 244
                   9*********999887 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.9e-05      0.15      63     135 ..     165     239 ..     157     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
  Reprolysin_4  63 tdsfaadisgedlgnsslatltstrdskdyDl.aallrdtrasqqnvgvawvgalcls.arqnkkasgvaasrde 135
                   +++   ++  e++++  +       d+ d+D  +++l +t as q++  a + ++  + ar +++a + +a++++
    CDO68417.1 165 PKQLKIKVMREAMNDDETQPVDEDEDEDDEDDdVVILPMTPASSQKCKSAVLHGASTKkARVSQGAQALQAVGEK 239
                   556666777888999999999999998876551556666669**********99998768879999999998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2487.23
//
Query:       CDO68418.1  [L=62]
Description: hypothetical protein BN946_scf184837.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.37   11.3   6.9       0.17   12.4   4.8    1.5  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.8   9.3e-06      0.17       3      30 ..      35      62 .]      29      62 .] 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.3e-06
  SNARE_assoc  3 sevllvaaGvlfglllgtlvtslgallG 30
                 +e++++++G+++gl+ g+ ++++g+++G
   CDO68418.1 35 HEIVAILCGLVWGLWAGFGIVAAGTFIG 62
                 89************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.31s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 411.79
//
Query:       CDO68419.1  [L=1482]
Description: hypothetical protein BN946_scf184837.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-68  230.1   0.0    4.3e-68  229.6   0.0    1.2  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    3.5e-22   78.6   0.0    5.6e-22   77.9   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    6.9e-06   25.8   0.0    2.4e-05   24.1   0.0    1.9  1  gag_pre-integrs  GAG-pre-integrase domain
    0.00038   20.6   0.1       0.01   16.0   0.0    2.6  2  rve              Integrase core domain
     0.0055   16.7   1.8     0.0055   16.7   1.8    1.8  2  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
       0.64   10.4   8.9          1    9.8   4.5    2.6  2  CCDC53           Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.6   0.0   1.4e-71   4.3e-68       1     241 [.     994    1236 ..     994    1237 .. 0.97

  Alignments for each domain:
  == domain 1  score: 229.6 bits;  conditional E-value: 1.4e-71
       RVT_2    1 ktyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevy 96  
                  +ty+lv+ P +   +g r+vf++k+d+  + +++karlvaqG++q++g+d++e+faPv++l+s+r +lalaa +++ + q++v+sa+Ln+ ldee+y
  CDO68419.1  994 DTYDLVEPPPNANIVGCRFVFRIKRDADgSITQFKARLVAQGYTQMPGVDFNETFAPVAKLSSIRTILALAARYDWELEQMEVKSAYLNGRLDEEIY 1090
                  59***********************9987889***************************************************************** PP

       RVT_2   97 vkqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfkl 193 
                  ++qPpG+   + e+ v+ L+k+lyGlkqa++ W++++++ ++++gf+r  + + ++ +  g++ +iva  vd l iag+    + d+k  ++++f++
  CDO68419.1 1091 MRQPPGSAPAGLEHLVCCLKKTLYGLKQAGRGWYKTLSNRMAEMGFTRCASDHAVWYKRAGDSIVIVASSVDHLTIAGTR-DFVMDFKSAISARFEM 1186
                  ****************************************************************************9875.67779*********** PP

       RVT_2  194 kdlgkvskfLGieiaq..eaggiklsladyiakvvkkfeltdaktvatPl 241 
                  +dlg +   LGie+++  +a +i +s++ yi  v+  f+l +a++v tPl
  CDO68419.1 1187 SDLGAMRWILGIEVQRdrQARTIAISQRTYIDTVAARFNLETANPVSTPL 1236
                  **************98667899***************************8 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   1.9e-25   5.6e-22       2     136 ..     142     280 ..     141     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.9e-25
  Retrotran_gag_2   2 kkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkvv 95 
                      ++k+   +  I+ +i+d+ll +vk   +a++vW + ++++e+ks++    lr +l  +k++eg +v++h+n+l  + +eL+a+g + +d++  +
       CDO68419.1 142 EQKEYATRQQIYGTITDALLLKVKALPSAADVWAAVAKEHEGKSEMYATSLRARLLGTKCAEGADVHEHFNTLIRIREELAAMGSPYPDNEFSA 235
                      5677888999************************************************************************************ PP

  Retrotran_gag_2  96 llLasLPesyetfvtaies....seedltleevieklleeeerrk 136
                      +l +sLPesy t+ t++ +        l++e++i ++ ee++rr+
       CDO68419.1 236 TLFQSLPESYGTLLTTLSTtarmTGHLLSPEYIIFAVSEEYDRRR 280
                      *****************9998777888999999999999999986 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   7.9e-09   2.4e-05      28      66 ..     520     561 ..     515     562 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 7.9e-09
  gag_pre-integrs  28 HrRLGHpsfsrlkkLfkkgllpglkisk...sevCeaCqlgK 66 
                      HrR+GH+s +  ++++++g + g+k  +   + vCe+C+++K
       CDO68419.1 520 HRRMGHISQQVSRRMVERGRICGVKLTDdatDTVCETCIQAK 561
                      ********************9999875545588********9 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.5e-06      0.01       5      69 ..     580     644 ..     576     647 .. 0.90
   2 ?    1.5   0.0      0.11   3.2e+02      40      99 ..    1376    1439 ..    1355    1446 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.5e-06
         rve   5 gelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggveper 69 
                 g+++++D++  ++ + gg++y+++++dd++r++ +++ + +++a  ++++le+ ++ + g+++++
  CDO68419.1 580 GDRIHADTWASDVTSLGGNKYVTTWTDDATRWTKTVPQKEKNQAFPAYKALEAELETQEGRRIKE 644
                 6789999998888888899**************************************99987665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
         rve   40 ealsdemdastvlalleravarfggve.pervlsDngseytsk...afrefladlgirvsftrp 99  
                  +al++ ++ +++l+ l   + +   ++ p+++ sDn s+++     af+   ++ +ir  f r 
  CDO68419.1 1376 IALTHAAKEALWLRYLLSDIIHPDISRyPLTLFSDNRSAIALAkdnAFHPRTKHIDIRFHFIRE 1439
                  4444444445555555555555555558***********9987888999999999999998875 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.8   1.8e-06    0.0055       2      16 ..     300     314 ..     299     314 .. 0.95
   2 ?   -3.2   0.1       3.7   1.1e+04       9      13 ..     523     527 ..     522     528 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                  C+nC + GH++ dC
  CDO68419.1 300 ECFNCKRKGHVKADC 314
                 6************** PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.7
                 SSSTT CS
     zf-CCHC   9 pGHia 13 
                 +GHi+
  CDO68419.1 523 MGHIS 527
                 8**98 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.11   3.2e+02      74     108 ..      78     113 ..      33     141 .. 0.54
   2 ?    9.8   4.5   0.00034         1      32     118 ..     784     872 ..     777     882 .. 0.55

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
      CCDC53  74 ppppsseaaaaaaqaeeasqaeesae.eeaeeqees 108
                 p pp+ ++a+ a+q  ++++a++ ++ + +e+ ++s
  CDO68419.1  78 PRPPALTPASRAEQSRSPTAAATAEStVPEETAADS 113
                 222333333333333222222222220222222222 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
      CCDC53  32 rleitlalLEakLsSipgleeveaeaaeastsddn.aarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeqeesesk..nvltvkd 118
                 ++e +++ +E   +S+ ++e+v+ e+a+a + ++  + ++++p+p+p se+  a+++++e+s+ ++++++e+ee++++e++     +v++
  CDO68419.1 784 TIERNVRFVEDEPDSV-EVEDVQLEGAKADRGEQLtSSTSPSPTPQPPSETHPATPPPSEPSTLQTNQDDEEEESAPPEEAagRGQRVRK 872
                 6788888888888888.5566666654443333322344444444444455555555555555555555555555555443455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 9534.97
//
Query:       CDO68420.1  [L=391]
Description: hypothetical protein BN946_scf184837.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2652.16
//
Query:       CDO68421.1  [L=804]
Description: hypothetical protein BN946_scf184707.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-27   96.5   0.2    2.7e-18   66.0   0.0    2.2  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-11   2.8e-07     154     225 ..     318     388 ..     311     394 .. 0.84
   2 !   66.0   0.0   1.5e-22   2.7e-18     284     404 ..     391     607 ..     382     610 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.6e-11
  Pkinase_fungal 154 vgRgTtcwrarkegergkeyvvKdsWrdaerk.sEaelLkkaeerg.vegvarlvahedveekdddiaeiRkgl 225
                     +gR Tt++r++++++    +++K s  d +r+ +EaelL +++++g v gv+r++  edv++ dd i   +k+ 
      CDO68421.1 318 WGRRTTVFRVTRNKRS---VIIKESYIDCGRRfQEAELLMQIHQNGfVPGVVRHITAEDVKNGDDIIMLSKKDG 388
                     79**********8666...***********************9998569***********85555555555554 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 1.5e-22
  Pkinase_fungal 284 nrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilit...........................dskkegerkg 351
                     +r  rr+v+ +vG+ ++ aes+ +ll +++D ++ hr L ++ +iLHrD    Nil++                            s ++++ + 
      CDO68421.1 391 TRKKRRMVLADVGQDLSFAESVNDLLMVIYDTLEVHRMLARDRQILHRDMTLFNILMYpslapcvegrflrnsppliddvlrgelRSPEQRSARC 485
                     7999**************************************************************************999998766777999** PP

  Pkinase_fungal 352 lLiDLDlakelsddssesga...rertGTleFmaievlkgeeHsyr................................................. 394
                     l+iDLD a +l   ++++ +   r+rtGT++++a  v +g+  + +                                                 
      CDO68421.1 486 LIIDLDNAASLVAAKANAIPeelRCRTGTPAYIARAVSSGSVYTAMgtlrwsrkmpelsgeakqlyiklygegrylkyldtgdtvhgglppreae 580
                     ***********987666633566***********9999987777778888999999999999999999999999999999999999999999999 PP

  Pkinase_fungal 395 .................hDLESffyvl 404
                                       D ES+f+ +
      CDO68421.1 581 ediasrarkmtfyhrweYDAESVFWTM 607
                     999999999999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5552.54
//
Query:       CDO68422.1  [L=477]
Description: hypothetical protein BN946_scf184707.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-74  249.0   8.6      8e-74  248.6   8.6    1.1  1  SecY             SecY translocase
    7.5e-19   67.3   0.2    4.4e-18   64.8   0.2    2.3  2  Plug_translocon  Plug domain of Sec61p
  ------ inclusion threshold ------
      0.084   13.0   0.3        2.6    8.2   0.6    3.3  3  DUF4235          Protein of unknown function (DUF4235)
        2.3    8.1   0.0        2.3    8.1   0.0    3.3  4  Claudin_3        Tight junction protein, Claudin-like


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.6   8.6   1.8e-77     8e-74       1     305 [.      76     457 ..      76     458 .. 0.82

  Alignments for each domain:
  == domain 1  score: 248.6 bits;  conditional E-value: 1.8e-77
                 BTTSSTCHHHHHHHHHHHHH.HHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..........HH.HHHHHHHHHHHHHHHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLl.tvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg..........lalllivlqltagtvllmwLgEq 88 
                 ++++LGI+P++t+++i+qLl ++   +l  ++   +e+r+++++++++++++++l qa++++l+ g          +++ll+++ql+ +++++++L+E+
  CDO68422.1  76 TLMELGITPIVTSGMIMQLLaGA---NLIDVDFSLKEDRALFSGAQKLFALIISLGQATVYVLT-GlygqprdlgaGICLLLIIQLVSASLIVILLDEL 170
                 89******************888...55555545999***********************8754.56799******88********************* PP

                 HHH.HSSTTHHHHHHHHHHHHHHC.CHSS.............-HHHH................SS........THHHHHHHHHHHHHHHHHCHHHHBEE CS
        SecY  89 ite.kGiGnGisllifagivarlp.kals.............gliel................ale......gilallllllvtllvillvvyveeaer 150
                 +++ +G+G+Gisl+i+++i+++++ ka+s             g                    a        + l+++++l++t++v+++v+y++ +++
  CDO68422.1 171 LQKgYGLGSGISLFIATNICESIVwKAFSpttvntgrgpefeG---AvvnlfhllftgndkgrA-LreafwrERLPNIMNLIATVVVFAVVIYLQGFRI 265
                 *****************************66666665555551...044445556655555551.0455666668************************ PP

                 EECBBBSTT....S.S-EEEEETTCCCSCHHHHHHHHHH.......HHHCCCCS..........................................TCC CS
        SecY 151 ripvqyakrgrkggqssylPlklnyagviPiIfasslla.......lpstiaqfl.........................................lal 201
                 +ipv++++    +gq++ +P+kl+y++++Pi++ s+l +       +       l                                            
  CDO68422.1 266 EIPVKSNRF---RGQRGSYPVKLFYTSNMPIMLESALTSnvfiisqM-------LasrfpsnffvrllgvwepledspqlaavsgiayymspphtlR-- 352
                 *****9954...49*************************55554440.......3444455555566666666666666666555554445433331.. PP

                 CS..THHHHHHHHHHHHHH....HHHHHHTCT.THHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.TT.TTHH CS
        SecY 202 ls..psvlyvvlyvlliif....Fayfyteit.fnpkevaenlkksggfipgirpgketakyLekvlsritliGalflaliavlpdllgasligafggt 293
                  +   ++l++++y+++++     F+++++e++ + p+++a++lk++++++ g+r+  ++ k+L++v+++++++G+++l+l++v++dl+ga  ig  +gt
  CDO68422.1 353 -EalVDPLHTLIYIAFTVTacaiFSKTWIEVSgSGPRDIAKQLKDQQMVMAGHRE-GSMYKELKRVVPTAAALGGAILGLLSVVADLMGA--IG--SGT 445
                 .1443456888888888877888*******************************8.6899******************************..88..*** PP

                 HHHHHHHHHHHH CS
        SecY 294 slLivVgvalet 305
                 ++L++V++++ +
  CDO68422.1 446 GILMAVTIIYSY 457
                 *********986 PP

>> Plug_translocon  Plug domain of Sec61p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.2   9.9e-22   4.4e-18       1      35 []      41      75 ..      41      75 .. 0.99
   2 ?   -0.9   0.0      0.35   1.6e+03      20      34 ..     391     405 ..     385     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 9.9e-22
                     HHHHHHCCSB-TT--SSS-TCCHTTTCCCCTSSTT CS
  Plug_translocon  1 llYlvlsqiPLyGissssssDpfywlRaifAsnrG 35
                     l++lv+sq+PLyGi ss+s+Dp+yw+R+i+AsnrG
       CDO68422.1 41 LIFLVCSQVPLYGIMSSDSADPLYWMRVILASNRG 75
                     7*********************************9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
                      TCCHTTTCCCCTSST CS
  Plug_translocon  20 sDpfywlRaifAsnr 34 
                      + ++   ++++A+ r
       CDO68422.1 391 AKQLKDQQMVMAGHR 405
                      56777789****986 PP

>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.69   3.1e+03      38      58 ..      24      44 ..      18      49 .. 0.75
   2 ?   -1.6   0.0      0.67     3e+03      46      74 ..     293     321 ..     288     323 .. 0.84
   3 ?    8.2   0.6   0.00058       2.6      11      65 ..     366     436 ..     356     444 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.69
     DUF4235 38 dedvslrevllfAaisGavla 58
                d++v++ + +l++a++ +++ 
  CDO68422.1 24 DRKVPFNQKVLWTAVTLLIFL 44
                677888899999999866665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.67
     DUF4235  46 vllfAaisGavlavvrvaadRgtargver 74 
                 ++l  a++  v+ + +++a+R    ++ r
  CDO68422.1 293 IMLESALTSNVFIISQMLASRFPSNFFVR 321
                 7888999999**********987777766 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00058
     DUF4235  11 vaGavagkafaavWkkvtgedaP..kdpk...............dedvslre.vllfAaisGavlavvrvaad 65 
                 + ++ a ++f++ W  v+g+ +   +  k               +   +l+  v ++Aa+ Ga+l++++v+ad
  CDO68422.1 366 AFTVTACAIFSKTWIEVSGSGPRdiA--KqlkdqqmvmaghregSMYKELKRvVPTAAALGGAILGLLSVVAD 436
                 55667888999999999999766452..133577799999988866677777355899*************98 PP

>> Claudin_3  Tight junction protein, Claudin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.074   3.3e+02      67     116 ..      87     136 ..      36     144 .. 0.77
   2 ?   -3.2   0.3       1.6   7.2e+03     103     114 ..     153     164 ..     145     193 .. 0.57
   3 ?   -0.6   0.4      0.25   1.1e+03      64     123 ..     251     315 ..     240     325 .. 0.53
   4 ?    8.1   0.0   0.00052       2.3       8      34 ..     359     385 ..     351     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.074
   Claudin_3  67 flvviliyivivrkvkkngysksvrklffliallslliviltviavilia 116
                 +  +i+++++ ++ +  +   k+ r lf + + l++li+ l  ++v++++
  CDO68422.1  87 TSGMIMQLLAGANLIDVDFSLKEDRALFSGAQKLFALIISLGQATVYVLT 136
                 44567888888888888888899999999999999999999888887765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
   Claudin_3 103 liviltviavil 114
                 li+ l ++++i+
  CDO68422.1 153 LIIQLVSASLIV 164
                 333333333332 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.25
   Claudin_3  64 lalflvvi.liyivivrkvkkngys....ksvrklffliallslliviltviaviliavnvskfn 123
                 +++f+vvi l+ + i + vk n +     ++  klf++  +  +l ++lt+  +i+ ++ +s+f 
  CDO68422.1 251 VVVFAVVIyLQGFRIEIPVKSNRFRgqrgSYPVKLFYTSNMPIMLESALTSNVFIISQMLASRFP 315
                 33333333344444444444444431110233456666666677777777777777666666655 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00052
   Claudin_3   8 lgvlvvisfilnivglftpaWiteest 34 
                 l  l+ i+f +++ ++f++ Wi+ ++ 
  CDO68422.1 359 LHTLIYIAFTVTACAIFSKTWIEVSGS 385
                 56789*****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3260.37
//
Query:       CDO68423.1  [L=519]
Description: hypothetical protein BN946_scf184707.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-89  300.6   0.0    1.8e-89  300.3   0.0    1.1  1  ATG7_N    Ubiquitin-like modifier-activating enzyme ATG7 N-te
    8.9e-06   25.2   0.0     0.0015   17.9   0.1    2.2  2  ThiF      ThiF family


Domain annotation for each model (and alignments):
>> ATG7_N  Ubiquitin-like modifier-activating enzyme ATG7 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.3   0.0     2e-93   1.8e-89       1     300 []       4     319 ..       4     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 300.3 bits;  conditional E-value: 2e-93
                 ---B---EEE-HHHHHHHHHHHHHTTTT----EEEEEEE-S-....-CT......TB---EEE-GGGS------BTTBEEEEEEEEEESSHHHHHCS-C CS
      ATG7_N   1 LqFapfssaielsFwhelaslKldelkLddsarpilglyelr....das......elssrlsldassletsdevpkgevraeGtlknfNTieeFknldk 89 
                 +qFapf+s ++++Fwh+l++lK+d+l+L+d a p++++y+++    d +      +l ++l+l ++++++s ++p+++v a+G++knfNTie+Fkn+dk
  CDO68423.1   4 VQFAPFQSLVQPDFWHALTNLKIDVLRLSDHALPVSASYTAGravkD-RetgteiALGCNLTLGGDAFSESPQAPANAVLAKGSFKNFNTIEDFKNADK 101
                 59****************************************77652.14677779******************************************* PP

                 HHHHHHHHHHHHHHHHTTHHHH-GGGTT-EEEEEEEETTTTEEEEEEEEEEEE-SS--EEEE..EEEHHHHS-HHHHHHHHHHHHHHHHSTTTTT--EE CS
      ATG7_N  90 kallkeaakkiweaiksgkaledpslLssflllsFADLKkykFyYwfafPalklskpawvls.eeksaseelsekeleslveavqklrkssderqegff 187
                 +al+++++++ w++i ++k   ++ lL+ fll++FADLKkyk+ YwfafPa+ ++kpaw++  ++++a + l e++l+++++++++         ++ff
  CDO68423.1 102 TALFNQTSDETWKSIVEDK---CTALLTHFLLITFADLKKYKYFYWFAFPAF-AAKPAWEIDgDWSAAPDVLGEDALSAIHAQLHQS-------LRPFF 189
                 ****************987...7899**************************.8********9*********************443.......346** PP

                 EEEEETTS-EEEE-GGGHHHH-STT..EEEEEEEE-----TTS-BTTHHHHHHHHHHHH--S..EEEEEEE-EET.TEE-TT.TSEEEEEE........ CS
      ATG7_N 188 lvkksreeeleiaslseleeedede..edvyvgfvDpssleenpGWpLRNlLvllrarwklk..kvkvlcyRdskasakreeerSlvlelk........ 274
                 lv++++++  eia ++e++++++d+  +++++gf+Dps++++npGWpLRNlL++l+++++++  +v++lc+Rd +  +  +  +S +  l+        
  CDO68423.1 190 LVRTKDGK-TEIALVEEYDKFFADVpaDQRTIGFLDPSAQPNNPGWPLRNLLAYLTVHHPETarSVRILCWRDVE-PGILSGWKSRFGILRqgssddaa 286
                 ****9877.***********5555444********************************99999**********6.56777779999999989999998 PP

                 .......--EEEEE--B.TTBS--EEEE-TTT- CS
      ATG7_N 275 .......lpkavGWernekgklgprlvdLselM 300
                         p avGWe+n  gklgpr++dL+++M
  CDO68423.1 287 apadmraKPAAVGWEKNIYGKLGPRVADLAPMM 319
                 88887777799********************99 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.7e-07    0.0015      11      39 ..     344     372 ..     331     374 .. 0.87
   2 !    5.6   0.0   0.00098       8.8     169     243 ..     374     461 ..     371     462 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.7e-07
                 HHHHHHHTSEEEEE--SHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrdskvllvGaGglGsellknLal 39 
                  +++ ++++++ll+GaG+lG++++++L+ 
  CDO68423.1 344 LDLDTVASTRCLLLGAGTLGCYVARTLMS 372
                 5678899********************96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00098
                 .EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHHHHHHHHH......................TTBCGGGCCEEEECCTTTTEEEEECCEEEEEEC-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 169 edptekkvplctsiagnipaiatttavvaglaalellkll......................sgkeklenslltqvdllesrfenvelerakkskcl 243
                 +d+t ++ +++         +++ +a +a  +a+ell ++                       g e + + +++q+++++ +f+nv+++ ++  kc+
  CDO68423.1 374 TDRTLDQMCTV---------TRPGLAPIAASTAVELLVSMlqhpegihapapppqsnnsdtaAGSESILGIVPHQIRGFLAQFRNVPIVGPAYTKCT 461
                 56667776666.........999************999999999***999****9999999988899999999************999988877875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 3205.94
//
Query:       CDO68424.1  [L=395]
Description: hypothetical protein BN946_scf184707.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.4   0.8       0.32   11.2   0.3    1.8  2  Adeno_PIX  Adenovirus hexon-associated protein (IX)
       0.82   10.1   2.8        9.8    6.7   0.5    2.5  2  EspF       EspF protein repeat


Domain annotation for each model (and alignments):
>> Adeno_PIX  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   3.6e-05      0.32      27      64 ..      12      49 ..       7      55 .. 0.87
   2 ?   -2.3   0.0      0.54   4.8e+03      36      54 ..     163     181 ..     154     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.6e-05
   Adeno_PIX 27 sidgrpvlpansttltyetvsgtpletaasaaasaaaa 64
                  dg+ v+p  stt+t +  +  p+e+   a+as  a 
  CDO68424.1 12 MPDGKDVVPEPSTTITLKRSAADPIESQDDATASKRAK 49
                569*************************9999997664 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.54
   Adeno_PIX  36 ansttltyetvsgtpleta 54 
                 a  t l y + s +p +t+
  CDO68424.1 163 ALETPLQYAASSQSPDQTS 181
                 4445555555555555554 PP

>> EspF  EspF protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.5    0.0011       9.8       9      28 ..      53      72 ..      46      80 .. 0.78
   2 ?    2.7   0.1     0.019   1.7e+02      17      34 ..     209     226 ..     204     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0011
        EspF  9 ehiPPaPnWPaPsPPvqneq 28
                   PP  n  aP PP q   
  CDO68424.1 53 AELPPKTNTKAPEPPYQQSD 72
                568*************9765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.019
        EspF  17 WPaPsPPvqneqsrPLPD 34 
                 WP  +PP   ++ + LP+
  CDO68424.1 209 WPLTTPPSTQDRDKTLPE 226
                 ********9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2707.68
//
Query:       CDO68425.1  [L=546]
Description: hypothetical protein BN946_scf184707.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-67  226.9   0.0    2.4e-66  224.4   0.0    1.9  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.4   0.0   1.4e-70   2.4e-66       3     440 ..      37     511 ..      35     525 .. 0.84

  Alignments for each domain:
  == domain 1  score: 224.4 bits;  conditional E-value: 1.4e-70
                 SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEET.TEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHH CS
        p450   3 gptplplvgnllqlgrkeelhevlrklqkkygpifrlklg.skpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRr 100
                 +p+p  +vg+++ + +  e  ++ ++++++yg++++l+   + ++v+ +++   + vlik++++f +    a ++   +  +g gv+++++++++++R+
  CDO68425.1  37 PPSPSVFVGHIIDFFQ-SEGGNFAKRMAETYGHVVKLRGLfGARMVLTHDSRVLHTVLIKDADAFPK--CAAPYD-EFMLLLGPGVFTTESAQHRRQRK 131
                 566999*******985.78888899************9651699999999***********855555..344555.56799****************** PP

                 HHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH................HHHHHHHHHH CS
        p450 101 fltptltsfgkl.sleelveeeaedlveklrkkagess...elditellskaaldvigsilFgarfdlledek................lselvkavee 179
                  l+p +     l ++++++ +++ + +e++++++g+      +d+  ++ +++l+++g+  +g +fd   d++                +  l+ +v  
  CDO68425.1 132 QLNPVFSVA-HLrRMTDIFYRIGYRACEAIQRRVGSFPdgaLVDVNGWIGRMTLEMLGQAGLGYSFDNFVDDStdafgesvksffptysQVALIGFVVP 229
                 ********9.888*********************9987799**************************77777778887777777543332223333333 PP

                 HHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.......SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHH CS
        p450 180 lssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa.......kksrrdfldalllak.kekkgesklsdeelaatvlel 270
                 ++s ++       l+  +++ +p   lrk+ ++ + +++  +++i+e++  l +          + +d++++ll a   ++ +e kl+deel a++ ++
  CDO68425.1 230 IMSYVMP----RRLIATIFRAIPHAELRKMMHISDLMEQRSKEIITEKKMALMKGddelkhnVGEGKDLMSILLRANmLASAEE-KLTDEELIAQMSTF 323
                 3333322....223333566777888888888888888888888888888888879***99966799*********86566665.9************* PP

                 HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS..............CEEETTE CS
        p450 271 lfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk..............dvvirgy 355
                 ++aG+dTts++l+ aLy L ++Pe qe+lreE+ e+ +++  +tyd l klpyldav++EtLRl+p+v   + R v k               +vi++ 
  CDO68425.1 324 MLAGMDTTSNALTRALYVLSEHPEEQERLREEVTEARNGD-DLTYDALDKLPYLDAVCRETLRLYPPVA-AIARGVAKdmtlplhtpvigvdGTVIQEL 420
                 *************************************664.5***************************.********55555555555555567788* PP

                 EE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS......CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 356 lipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg......nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                 ++ +G+ +++nl+a + dp ++ +++ + +peR+l+         +  + +   + F+ G R+CiG ++ ++e+k++l++l++ F++e   +
  CDO68425.1 421 HVSAGQWMLLNLQASNCDPVLWgEDALQWKPERWLEPLPtaledaRIPGVYSNLMTFSGGSRSCIGFKFSQLEMKVLLSLLISSFKFEA-TG 511
                 ***********************************997688998866799999***********************************6.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3457.66
//
Query:       CDO68426.1  [L=110]
Description: hypothetical protein BN946_scf184707.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-28   98.5   9.2    3.1e-28   98.2   9.2    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein
     0.0047   15.9   0.8     0.0051   15.8   0.8    1.0  1  Etmic-2        Microneme protein Etmic-2


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   9.2   3.5e-32   3.1e-28       1      88 []      21     109 ..      21     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 3.5e-32
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegkdieellangaakla..aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    e+t ++i ++++aa ve+e++++ ll+kalegk++++ll+n++a++a  aaaaa+aa+a a+aaa+a +e++k+ee+ Ee+dddmGfgLF
     CDO68426.1  21 EITPDKILTLTSAAHVELEPIWATLLAKALEGKNVKDLLSNVGAGGAgpAAAAAPAAGASAGAAAEAPKEEEKKEEK-EESDDDMGFGLF 109
                    699******************************************99877777777777777777777777777776.8*********** PP

>> Etmic-2  Microneme protein Etmic-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   5.7e-07    0.0051      85     156 ..      25      96 ..      13     100 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.7e-07
     Etmic-2  85 detikvtsagwtkserdfivslv.adetrkvvqlresegasgasgpgpapaekppsg..qgsaeeapkgeggqek 156
                 d+ + +tsa     e  +   l  a e ++v +l       ga g gpa a  p +g   g+a eapk e  +e 
  CDO68426.1  25 DKILTLTSAAHVELEPIWATLLAkALEGKNVKDLLSNV---GAGGAGPAAAAAPAAGasAGAAAEAPKEEEKKEE 96 
                 55566666666666655544443134555565565554...555556666666665522799******9987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 820.98
//
Query:       CDO68427.1  [L=338]
Description: hypothetical protein BN946_scf184707.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.6   0.1       0.16   12.2   0.0    1.7  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.2e-06      0.16      14      44 ..      87     116 ..      81     137 .. 0.83
   2 ?   -2.0   0.0      0.23   4.1e+03      82     108 ..     158     184 ..     148     186 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.2e-06
                 EEEETTTEEEEE-HHHHHHH-HHHHHHHTST CS
         BTB  14 tlvvgdgkefkahkavLaarSpyFkalftsk 44 
                 +++v+ ++ f+ h   L+ +S++F alf + 
  CDO68427.1  87 VVQVQ-NSLFRLHPSRLSQHSQFFAALFRNS 116
                 67889.6**********************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.23
                 GGHHHHHHHHHHHT-HHHHHHHHHHHH CS
         BTB  82 enleelLaaadllqiprlkkaceeflk 108
                 + l++l +aa+ l ++++ + ++++l 
  CDO68427.1 158 NVLASLVRAAHALSFKSILTFAMHLLH 184
                 556777788888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2260.39
//
Query:       CDO68428.1  [L=233]
Description: hypothetical protein BN946_scf184707.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   23.2   0.1      0.029   15.5   0.0    2.8  2  EthD      EthD domain


Domain annotation for each model (and alignments):
>> EthD  EthD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-06     0.029       3      54 ..      15      81 ..      13     115 .. 0.70
   2 !    4.8   0.0    0.0036        64       9      33 ..     140     166 ..     135     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-06
                S-HHHHHHHHHHTHHHHHCTSTT...........................--EEEEEEEEEBTTC-- CS
        EthD  3 lspeeFrdyweevHaplvkdllg..girryvlr.............atktrpateagvalagpgsda 54
                +s eeF d++ ++H+pl  +l+g  +  r+++              +++   a++a+v +a++ s+ 
  CDO68428.1 15 VSTEEFNDWYDHEHVPLFFQLQGfhSWSRWIAAdgrcpaycaiydvSSTDILAQPAAVERANNRSER 81
                689********************75355554445555544444666555666666666665555555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0036
                 HHHHHHTHHHHHCTSTT.......... CS
        EthD   9 rdyweevHaplvkdllg..girryvlr 33 
                  +++ e+H+ l+++++g    rr+vl 
  CDO68428.1 140 NRWYDEEHVLLLSKIPGwvRSRRFVLV 166
                 689999***********7534444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1743.37
//
Query:       CDO68429.1  [L=232]
Description: hypothetical protein BN946_scf184707.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   38.8   0.0    0.00083   20.5   0.0    2.3  2  EthD      EthD domain
  ------ inclusion threshold ------
      0.015   15.4   0.2      0.044   13.9   0.1    1.8  2  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> EthD  EthD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   9.2e-08   0.00083       3      45 ..      15      61 ..      13      76 .. 0.77
   2 !   16.4   0.0   1.8e-06     0.016       5      34 ..     135     169 ..     133     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 9.2e-08
                S-HHHHHHHHHHTHHHHHCTSTT................--EEEEEE CS
        EthD  3 lspeeFrdyweevHaplvkdllg..girryvlr..atktrpateagv 45
                ++peeF d++ ++H+pl ++++g  +  r+++   +++t pa ++  
  CDO68429.1 15 VTPEEFNDWYDNEHVPLRIPIPGfqSWSRWTAVdgQHPTYPAIYDLS 61
                79*********************644666666587777777766655 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHTHHHHHCTSTT.............. CS
        EthD   5 peeFrdyweevHaplvkdllg..girryvlr...a 34 
                 +e+F++++ ++H+pl+++++g    rr+vl    a
  CDO68429.1 135 EEDFHKWYDGEHIPLLAKVPGwvRSRRFVLVdsgA 169
                 79*******************74355555443441 PP

>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.67     6e+03      29      42 ..      31      44 ..      16      51 .. 0.57
   2 ?   13.9   0.1   4.9e-06     0.044       5      65 ..     125     196 ..     122     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.67
                HHHTSTTEEEEEEE CS
         ABM 29 llaeepGclgyell 42
                l+ + pG+ + + +
  CDO68429.1 31 LRIPIPGFQSWSRW 44
                44456666665555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.9e-06
                 EEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEE...........EEETSTTEEEEEEEESSHHHHHH CS
         ABM   5 iaeirvkpgqaeafldafaeavesllaeepGclgyell...........rstedpdevvvieeWeseaalea 65 
                  + i++ pg++e+f + +   + +lla++pG+ + + +            + e p +++ i+eWes++ +e+
  CDO68429.1 125 EVDIKPVPGAEEDFHKWYDGEHIPLLAKVPGWVRSRRFvlvdsgaigseAKGERPPKFLAIHEWESADVFER 196
                 56799**************99999**********99998888888887636888889*********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1924.74
//
Query:       CDO68430.1  [L=90]
Description: hypothetical protein BN946_scf184707.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 639.73
//
Query:       CDO68431.1  [L=402]
Description: hypothetical protein BN946_scf184707.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   13.0   0.0       0.46   10.7   0.0    2.0  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.6e-05      0.46      20     107 ..     100     195 ..      92     198 .. 0.74
   2 ?   -0.8   0.0     0.097   1.7e+03      78     108 ..     231     260 ..     223     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.6e-05
                 TEEEEE-HHHHHHH-HHHHHHHTST.........TTTTCCCE....EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  20 gkefkahkavLaarSpyFkalftsk.........eieessvs....eielddvepeafealLefiYtgeleit.seenleelLaaadllqiprlkkace 104
                 ++  +  ka L  rS yF +lf++          +      +    + + + v+ ++f+ l+  +       +  +e+++ lL++a  l ++ ++++++
  CDO68431.1 100 DSPRRLPKAWLTERSGYFAELFNDVakdedgmarG------DgkakHRTSPGVSTDDFDLLIAALQDPDQYKDaPQEMVATLLRVAFALACEPVITLAK 192
                 5566777999**************97777766531......033336678************9995444333346899999999999999999999887 PP

                 HHH CS
         BTB 105 efl 107
                 + +
  CDO68431.1 193 DRF 195
                 765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.097
                 C-CGGGHHHHHHHHHHHT-HHHHHHHHHHHH CS
         BTB  78 itseenleelLaaadllqiprlkkaceeflk 108
                  t  +++ + +++ + ++ip ++k +++ l 
  CDO68431.1 231 HT-YQEALAAIRLGREYDIPGVIKRASYELA 260
                 54.5667777889999*******99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3130.23
//
Query:       CDO68432.1  [L=429]
Description: hypothetical protein BN946_scf184707.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.6   2.1       0.27   10.7   1.7    1.5  1  Stevor    Subtelomeric Variable Open Reading frame
       0.16   12.2   0.2       0.27   11.4   0.2    1.3  1  DUF4381   Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7     3e-05      0.27     216     261 ..     222     269 ..     161     279 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3e-05
      Stevor 216 aaasdlagta..asaassafepygiaalvllilavvliiLYiwlyrRR 261
                 ++++d+ g +  +s a+sa e  +i + vll + + l ++++w +rR 
  CDO68432.1 222 TTTADTFGAIsvSSHAMSAAEVAAICISVLLSIGLCLFLVFLWRRRRI 269
                 23333333332389999999999***********99999999977762 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   3.1e-05      0.27      27      59 ..     249     283 ..     237     300 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.1e-05
     DUF4381  27 alll...llllvlalwllrrrkrnrreAlreLaalr 59 
                  +ll   l+l++++lw++rr +r r++ +++++a +
  CDO68432.1 249 SVLLsigLCLFLVFLWRRRRIQR-RKAKIHAFTASQ 283
                 33334347777777777777776.888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3020.48
//
Query:       CDO68433.1  [L=193]
Description: hypothetical protein BN946_scf184707.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1350.56
//
Query:       CDO68434.1  [L=440]
Description: hypothetical protein BN946_scf184707.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3347.62
//
Query:       CDO68435.1  [L=204]
Description: hypothetical protein BN946_scf184707.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-37  126.0   0.3    1.1e-36  125.1   0.3    1.4  1  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
      1e-31  109.2   3.9    1.5e-31  108.7   2.5    1.9  2  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.3   1.2e-40   1.1e-36       3     102 .]      96     194 ..      94     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 1.2e-40
                 HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHHHH CS
    Sod_Fe_C   3 gelaeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWkeve 100
                 g l+eai++++gs+++fk+ef+++++a++gsGw+wL ++++ k Lei+tt+nqd  l+  ++p++++D+wehA+yl+y n +adY++a+wnv+nW+e+e
  CDO68435.1  96 GPLKEAITKTWGSVDNFKNEFNTTTAAIQGSGWGWLGYNPQtKVLEITTTANQDPLLS--HVPIIGVDIWEHAFYLQYLNVKADYLKAIWNVINWDEAE 192
                 789************************************99567**********7666..58************************************9 PP

                 HH CS
    Sod_Fe_C 101 er 102
                 +r
  CDO68435.1 193 KR 194
                 87 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   2.5   1.7e-35   1.5e-31       2      82 .]       3      80 ..       2      80 .. 0.96
   2 ?   -0.8   0.0      0.24   2.2e+03      69      81 ..     160     172 ..     137     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 1.7e-35
                ------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N  2 yeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlkklekalrnnagghvnHslfwknls 82
                + Lp+LpYaydaLeP isk+++elHh+kHh+tYvn lN+a++ +++a++++e+++   l+ al++n+ggh+nHslfw+nl+
  CDO68435.1  3 HVLPDLPYAYDALEPFISKQIMELHHKKHHQTYVNSLNAAEQAYAKASTPKERIA---LQAALKFNGGGHINHSLFWTNLA 80
                78***************************************************99...7889*****************95 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHTB CS
    Sod_Fe_N  69 gghvnHslfwknl 81 
                    + H+++ + l
  CDO68435.1 160 VDIWEHAFYLQYL 172
                 5679999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1650.04
//
Query:       CDO68436.1  [L=737]
Description: hypothetical protein BN946_scf184707.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-25   90.2   0.0    5.1e-20   71.6   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-07     0.002     154     218 ..     296     359 ..     284     371 .. 0.85
   2 !   71.6   0.0   2.9e-24   5.1e-20     284     405 ..     369     551 ..     359     554 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-07
  Pkinase_fungal 154 vgRgTtcwrarkegergkeyvvKdsWrdaerk.sEaelLkkaeergv.egvarlvahedveekdddi 218
                     ++R Tt++ra  +g+    ++vK s  d +r+ +E+elL  a+  g   gv+ ++  edv++  + i
      CDO68436.1 296 WSRRTTVFRAILKGRY---VIVKESYFDCDRRyEEGELLTLAHADGFlPGVVHYIVFEDVKNGAEPI 359
                     69**********9887...9**********999*********9998669***********9555555 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 2.9e-24
  Pkinase_fungal 284 nrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilit...........................dskkegerkg 351
                     +r  rr+v+ ++G++++ a+s+ +ll a+++a++ hr L ++ +iLHrD S  N+l++                            s +++e + 
      CDO68436.1 369 TRKKRRIVLADSGEELTFAKSVNDLLMAVYNALEVHRTLAHDRQILHRDMSLFNVLMYpdwaphpggryfensppliddilqgelRSLEKREARC 463
                     7999********************************************************************999999888886655555999** PP

  Pkinase_fungal 352 lLiDLDlakelsddssesga.....rertGTleFmaievlk...........................gee.....HsyrhDLESffyvll 405
                     lLiDLD a  l++  s++g+     ++rtGTl ++a  v +                           + +     H+   D ES+f+ ++
      CDO68436.1 464 LLIDLDNAACLEN--SKAGQipkelQCRTGTLTYVARCVANgslfsdgprtihggvpplemdeeiearA-QdlpfyHRWEYDAESVFWAMY 551
                     ***********96..44444446679**********999998888888888888888888777665542.1355668888********776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5330.22
//
Query:       CDO68437.1  [L=1053]
Description: hypothetical protein BN946_scf184707.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-78  264.0   0.1      2e-78  263.4   0.1    1.3  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    5.6e-21   74.9   0.0    1.3e-20   73.7   0.0    1.6  1  rve              Integrase core domain
    6.6e-09   35.5   0.1    1.5e-08   34.4   0.1    1.6  1  gag_pre-integrs  GAG-pre-integrase domain
    0.00018   21.2   0.1    0.00043   20.0   0.1    1.7  1  rve_3            Integrase core domain
  ------ inclusion threshold ------
        1.6    8.8   4.7        3.6    7.6   4.7    1.6  1  RNA_polI_A34     DNA-directed RNA polymerase I subunit RPA34.


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.4   0.1   5.7e-82     2e-78       2     241 ..     570     809 ..     569     810 .. 0.95

  Alignments for each domain:
  == domain 1  score: 263.4 bits;  conditional E-value: 5.7e-82
       RVT_2   2 tyrlvslPkdrkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqP 100
                  + lv  Pkd + +++rWv+ +k+    +++ykarlva+Gf+q+ gedy+e+f+Pv+r++s++ lla aa e++ +  +dv++afLn++l+ee+y+ qP
  CDO68437.1 570 PWVLVPRPKDCQVVANRWVYDIKH----NGRYKARLVAKGFTQVWGEDYHETFSPVARFESIHYLLAHAALEDWDIESMDVKTAFLNGDLEEEIYMEQP 664
                 599********************5....9********************************************************************** PP

       RVT_2 101 pGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyv.rgtgegk.livalyvddlliagsdikiledvkkelakkfklkdlg 197
                  G ++ ++e++v+ L+k++yGlkqa+  Wn ki+k L +lgf+r+ +  G+yv r +g +k  iv lyvddll+ g+d k ++++k  l+k++k+ dlg
  CDO68437.1 665 EGWVVRGKEDYVCLLKKAIYGLKQASHQWNLKIHKSLLDLGFTRTYSDAGVYVyRRQGGDKvTIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLG 763
                 **************************************************997544444444899********************************** PP

       RVT_2 198 kvskfLGieiaqeag..giklsladyiakvvkkfeltdaktvatPl 241
                  v++fLG+ i ++     i++ +++yi++v++ f+++d+k+  tPl
  CDO68437.1 764 AVKRFLGLRISRDHTirRIEIDQEKYIQSVIERFDMADCKPARTPL 809
                 ***********97651168889**********************97 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   3.7e-24   1.3e-20       2     116 ..     138     254 ..     137     256 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 3.7e-24
         rve   2 trpgelwqvDvt.vvripdggg.kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftr 98 
                 t+p el+++D+   +r ++ g+ ++y++ ++ddfs+l ++++l++++da  +++  ++ ++ + g++++rv+sD+g ey s++f++ l dlgi+++ + 
  CDO68437.1 138 TEPLELVHTDLDgPMRTASVGSgFLYFASFIDDFSGLGIVYFLKRKSDAIKAFDNFKAWAETQTGKKIKRVRSDRGGEYLSNEFTQHLLDLGIEHQKST 236
                 789********998887777666******************************************99******************************** PP

         rve  99 pgrpqdnGkvErfhrtlk 116
                 p +pq+nG++Er +rt+ 
  CDO68437.1 237 PDSPQQNGRAERWNRTIV 254
                 ****************86 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   4.2e-12   1.5e-08      20      67 .]      77     125 ..      60     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4.2e-12
  gag_pre-integrs  20 nkssinlWHrRLGHpsfsrlkkLfkkgl.lpglkisksevCeaCqlgKq 67 
                      +k++ + WHrR+GH + ++l++L k+   ++ +++ ++e Ce C++gK+
       CDO68437.1  77 SKTDYKTWHRRFGHAGKEALRHLPKNVKgVDHVDPADDEPCEGCAFGKS 125
                      578899******************8522466667788***********6 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.2e-07   0.00043       2      56 ..     229     285 ..     228     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.2e-07
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellneelfrslae..arekleawredYNte 56 
                 gie++ + p +PqqNg +E+ n+t+ +++ ++ +   l++   + ++ea+++ YN++
  CDO68437.1 229 GIEHQKSTPDSPQQNGRAERWNRTIVEKAMSMLHHAGLSHgfWQLAVEAAIHIYNRQ 285
                 89***********************99999987744444422789999999999975 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.7     0.001       3.6      95     141 ..     448     492 ..     415     559 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.001
                   XXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXX............X CS
  RNA_polI_A34  95 epaas...vvpkpprpqpkgLkmRFkPfGsgdgppgtigssseesegeke 141
                   +         p+ p+p+p++ + R++P+G ++gp  +i+ + +  e++++
    CDO68437.1 448 P---PpepNHPAVPPPRPAHRRNRHQPVGGSNGP--SIARDRPRCENRQR 492
                   2...233478999****************99744..44555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6836.27
//
Query:       CDO68438.1  [L=28]
Description: hypothetical protein BN946_scf184704.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 201.59
//
Query:       CDO68439.1  [L=412]
Description: hypothetical protein BN946_scf184704.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.039   14.1   0.4      0.083   13.0   0.4    1.5  1  LPD39           Large polyvalent protein associated domain 39
       0.12   12.4   0.0       0.24   11.4   0.0    1.4  1  Gemini_AC4_5_2  Geminivirus AC4/5 conserved region


Domain annotation for each model (and alignments):
>> LPD39  Large polyvalent protein associated domain 39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   9.2e-06     0.083     119     147 ..      40      68 ..      31     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-06
       LPD39 119 rkaeyaeLrkrfeaLpeeakalYkkvRda 147
                  ++ey +L ++++a +eea alY++vR  
  CDO68439.1  40 HRKEYGRLTAAYKATSEEAEALYTEVRVR 68 
                 689***********************965 PP

>> Gemini_AC4_5_2  Geminivirus AC4/5 conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05      0.24       5      31 ..     267     293 ..     264     296 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
  Gemini_AC4_5_2   5 vtllkRLdLTwAFTalrnIraSvHpvh 31 
                     v+++kRL  Tw F +  ++  S+ +v+
      CDO68439.1 267 VLRIKRLAPTWVFPSVEEVDKSIRTVE 293
                     89*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2751.17
//
Query:       CDO68440.1  [L=897]
Description: hypothetical protein BN946_scf184704.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 5629.30
//
Query:       CDO68441.1  [L=299]
Description: hypothetical protein BN946_scf184704.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 2008.78
//
Query:       CDO68442.1  [L=1563]
Description: Glycosyltransferase Family 24 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-102  342.8   3.7   1.7e-101  339.2   3.7    2.1  1  Glyco_transf_24  Glucosyltransferase 24
    5.2e-67  226.5   0.0    1.3e-63  215.4   0.0    2.3  2  Thioredoxin_14   Thioredoxin-like domain
    6.7e-44  150.0   0.0    1.1e-43  149.4   0.0    1.3  1  Thioredoxin_12   Thioredoxin-like domain
    2.1e-41  140.5   0.0    4.8e-41  139.3   0.0    1.7  1  UDP-g_GGTase     UDP-glucose:Glycoprotein Glucosyltransferase
    4.9e-40  136.6   0.0    6.9e-39  132.9   0.0    2.6  3  Thioredoxin_13   Thioredoxin-like domain
      2e-30  106.3   0.0    7.3e-30  104.5   0.0    1.8  2  Thioredoxin_15   Thioredoxin-like domain
    4.5e-06   26.4   0.0    9.1e-06   25.4   0.0    1.4  1  Glyco_transf_8   Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_24  Glucosyltransferase 24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.2   3.7  6.6e-105  1.7e-101       1     267 [.    1278    1540 ..    1278    1541 .. 0.90

  Alignments for each domain:
  == domain 1  score: 339.2 bits;  conditional E-value: 6.6e-105
  Glyco_transf_24    1 inifsvasGklyerllkimilsvlkktkksvkfwlienflspkfkellpklakkygfeyelvtykwPkwlrkqkekqriiwgykilfldvlf 92  
                       inif+vasG+lyer+++imilsvl++tk+svkfw+i+nflsp+f e+lp++a++ygf+yelvtykwP+wlr+q+ekqriiw+ykilfldvlf
       CDO68442.1 1278 INIFTVASGHLYERFASIMILSVLRHTKSSVKFWFIDNFLSPSFLEFLPEFAAEYGFQYELVTYKWPSWLRAQTEKQRIIWAYKILFLDVLF 1369
                       89****************************************************************************************** PP

  Glyco_transf_24   93 PldldkvifvdadqvvradlkelveldlegapygytPlcdsrkemegfrfwkqgywkehlkgkkyhisalyvvdlkrfrklaagdrlraqyq 184 
                       P+dl+kvifvdadq+vradlkelv+ldl+gapygy+P++d++ ++egfrfwk+gywk+ l+g +yhisalyvvdl rfr++  +    +  +
       CDO68442.1 1370 PMDLKKVIFVDADQIVRADLKELVDLDLHGAPYGYVPMGDDNPDTEGFRFWKTGYWKDFLRGMPYHISALYVVDLVRFRQTCPTTCNAKFRS 1461
                       ********************************************************************************876655544444 PP

  Glyco_transf_24  185 klsadpnslanldqdlPnnlqeevpifslpqewlwcetwcsdeskkkaktidlcnnPltkepklerakrlieeweeldeevke 267 
                       +      s a l   +   l  e + + l ++   c t  s++ +++aktidlc+nPltkepkl+ra r i+ewe +d+e+++
       CDO68442.1 1462 TPFLRIGSGARLGVCI--ALYPEFHDMLLMDSAHTCITG-SKDRLDRAKTIDLCQNPLTKEPKLDRA-RKIPEWEVYDAEISA 1540
                       4455666777776544..334444444555666679885.67889**********************.679*********986 PP

>> Thioredoxin_14  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.4   0.0   4.9e-67   1.3e-63       1     254 []     452     710 ..     452     710 .. 0.85
   2 !    8.8   0.0   0.00056       1.4      53     200 ..     752     891 ..     749     938 .. 0.72

  Alignments for each domain:
  == domain 1  score: 215.4 bits;  conditional E-value: 4.9e-67
                     B---SGGGTTTS---S--SSS-SSSTTS---HHHHHS--SSS.----SS--EEEEEEEESS-HHHHHHHHTHHHHHHHTT-SEEEEEEEE-..SS CS
  Thioredoxin_14   1 fdirdrkeggdailwlNdLEkDkrYsrWpsslqellrplypgqlpsirkNlfnlVlvlDlsqredllelltllqsfiqrniPiRfGlVplvsses 95 
                     fd++dr eggd+i wlNdLE+D+rY rW  +l+ llr++ypgq p++r N+fn+Vl++Dlsq+++l+++  +++s+i+r++P+R+G+Vplv  e+
      CDO68442.1 452 FDASDRPEGGDVIGWLNDLENDPRYGRWGGTLRVLLRQMYPGQSPNVRLNMFNVVLAVDLSQASSLEFIGVTVNSLINRGLPFRWGVVPLV--ET 544
                     8******************************************************************************************..77 PP

                     HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH..HT-..SSS--..HHHHHHHHHHH......SS----TT...........TTHHH.......HHH CS
  Thioredoxin_14  96 edskklaklfyylaenygakaalefltaleakakk..skepdltkevvesafkea......ldealkseveeileaeitseydea.......lka 175
                     ed+ ++a+lfyyl+en+g++++l fl +l++++      +p+++ + v  +f++       lde l+++ +                     l+ 
      CDO68442.1 545 EDGARMARLFYYLLENFGPDETLGFLLSLSQRNVPldLLKPNVDWSAVRLNFNRLigaqeeLDEDLEQDLDV------------IlegtegdLEG 627
                     7799************************77555555433366777778888877633233333333333322............23334445*** PP

                     HHHHHHHTT--SSS...-EEEE.TTEEEESSSSHHHHHHHHHHHHHHHHHHHHHTT---SS--..GGGGT..TTS-BSS--TTT CS
  Thioredoxin_14 176 srefikrlglkeaq...epvfllNGvvlpfdekweqallaelqedlqelqkavyegiltdddd..vkdllldlegalkrrnpli 254
                      r+++ rlg++ ++   ++vf+ NG+++++d+++++ l++e +e+lq++q +vy+g+ltd+d   ++++++dl++++krrn +i
      CDO68442.1 628 PRAYAMRLGATLSSapqGHVFV-NGKHFDLDDEFLRLLQTEYTEQLQHFQMKVYKGELTDEDApkISTYFYDLPTTAKRRNTYI 710
                     ********88533344699999.*************************************7754499***************98 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00056
                     EEEEEEESS-HHHHHHHHTHHHHHHHTT-SEEEEEEEE-..SSH.H...HHHHHH....HHHHHHH.....TT-HHHHHHHHHHHH..HT-SSS- CS
  Thioredoxin_14  53 nlVlvlDlsqredllelltllqsfiqrniPiRfGlVplvssese.d...skklak....lfyylae.....nygakaalefltaleakakkskep 134
                     ++ +v Dl++ e+++++++++ + i+ +   R+ ++ + s++s+     +   +     +   l+      n++++++l++l   +     + e+
      CDO68442.1 752 TTYIVADLDS-EESRVIIKEVLKSIKPGSLSRLSFIHAPSTTSSvRdlpE---TTpshiV-GRLIAgnalsNVSPEQLLNVLGLSD-----PLED 836
                     566899***8.999**********************99987777442332...2233332.2222245556899999999998822.....2112 PP

                     -..HHHHHHHHHHHSS----TT...........TTHHHHHHHHHHHHHTT--SSS-EEEE.TTEEE CS
  Thioredoxin_14 135 dltkevvesafkealdealkseveeileaeitseydealkasrefikrlglkeaqepvfllNGvvl 200
                     +      ++ + e+ +e l s+v     a+   +y++ l+a r  +++l+lk   e ++++NG+++
      CDO68442.1 837 N-----AQAPLSEKTAEELLSDV-----AGSGAAYEQYLTACRLIVRKLELKPG-EAAVIVNGRLV 891
                     2.....22222222222222332.....34445899***************866.888888**987 PP

>> Thioredoxin_12  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   4.1e-47   1.1e-43       2     190 ..      36     244 ..      35     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 4.1e-47
                     --HHHHHHHHHSSS-HHHHHHHHHHH....HTTGGGS--SHHHHHHHHHHHHHH..S-.-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHTT.... CS
  Thioredoxin_12   2 tPlllealEtlakenedlFwefvdaleel.aeeesaesssdkelyeailklaes..ll.seealslfelsLalrsasPrieafyqlaeeslssl. 91 
                       ll+e +E +  e++++F++++da+++       +e+ss+k+++e++ ++a    +l +++a++++e+++al+s sP++eafyq+++++ +s  
      CDO68442.1  36 ANLLMESIEAVVIEEPEAFFPLLDAITDPdVFPLPTERSSAKHVLEHVFNAALAlgYLaEPGAYASAEMHIALHSPSPKLEAFYQYYNDHSASRa 130
                     579***********************55536677888889999****999998889888******************************877776 PP

                     ..GGGSS-SSEEEETTEEESSTT.------B...........--SS-STS--TT---BS.......--SEEEEEEE--SSTTSHHHHHHHHHHH. CS
  Thioredoxin_12  92 ..enekkCkswvdvggelvcdveeleallkk........ekaassseqpellpfDhvypgske...asspvaILYgdlgskefkefhkkLkela. 172
                       + +k+C+swvd++g++vcdve+l ++++             ++ + p++lpfD ++p++++   +  +vaILY++l+s++f+++h++L+++a 
      CDO68442.1 131 diRAAKSCGSWVDWYGTVVCDVETLARVVEVelidssdaVLDHTAVRAPKALPFDYILPDPSQrvdTPPRVAILYASLESPNFRDLHSYLYSAAc 225
                     5544445************************8888877666677778888***********9985444455***********************9 PP

                     .HHTSEEEEEEE---TTS- CS
  Thioredoxin_12 173 .kegkvkYvlRhvppsgse 190
                      +++ ++Y++R+vpp +++
      CDO68442.1 226 aETPTLSYIFRPVPPVKRN 244
                     9999**********98775 PP

>> UDP-g_GGTase  UDP-glucose:Glycoprotein Glucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   1.9e-44   4.8e-41       1     108 [.    1125    1234 ..    1125    1235 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 1.9e-44
                    EEE-EEESS----TT-EEEEE-SS-S-SEEEE--SGGGEEEEEE-SEEEEEEE-TTHHHHHEEEEE--SS-S--TT.--.--EEEE-STT-EEE- CS
  UDP-g_GGTase    1 eGhardettkspprGlqleLgtekkksvaDTivmanlGYfQlkanPGvwklelregrssdiyeiesvgaeglsspk.de.gkevvltsfegktly 93  
                    eGhar+ +t++pprGlq++L t++++ +aDT+vmanlGY+Q++++PGv+kle+r+gr+++i+++esvg+eg++sp  de g+e++ltsfeg+tly
    CDO68442.1 1125 EGHAREGETNTPPRGLQMQLVTSNSTPIADTLVMANLGYLQFRTKPGVYKLEIRPGRGREIFKMESVGNEGWNSPPvDEaGDEITLTSFEGVTLY 1219
                    8***********************************************************************999977789************** PP

                    -EEEE-TT----TTS CS
  UDP-g_GGTase   94 prvkrkpgkekedvl 108 
                    pr++r+pg+e++dvl
    CDO68442.1 1220 PRLSRNPGMERADVL 1234
                    *************98 PP

>> Thioredoxin_13  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   2.7e-42   6.9e-39       6     133 ..     314     444 ..     308     446 .. 0.94
   2 ?   -0.2   0.0      0.33   8.3e+02      73     118 ..     643     689 ..     633     695 .. 0.68
   3 ?   -3.0   0.0       2.4   6.2e+03      70      85 ..     877     892 ..     863     900 .. 0.80

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 2.7e-42
                     S----SSGGTTHHHHHHHHHHHHS...SHHHHHHHHHHTGGGGSTTCS-S.STTTTTTTTTHHHHHHS--TT--EEEETTEEE-GGG-SHHHHHH CS
  Thioredoxin_13   6 lkpLkawelqdLglqaaqlImsse...dpLkaLsdlsqnFPkyassLarv.kvseelreeieanqerlvqpgqnalwlNGvaldesdidpfsLld 96 
                      +pL+  el ++glqa+qlI+++e   d+L+++++l+qnFP ya +Lar+ +vs++l +e+ +n++r  ++g +a+w+NGv+++e+d++pf+Ll+
      CDO68442.1 314 TEPLTDAELLEIGLQATQLIYDAEephDRLATMKHLAQNFPRYAGALARRvTVSQSLFNEVAENRAR-APGGASAIWINGVNVEEKDLNPFALLR 407
                     35********************7755679********************99***************9.99************************* PP

                     HHHHHHHHHHHHGGGS--HHHHHHHHT-HHHHHHHHH CS
  Thioredoxin_13  97 lLrkErkllnslkklglsseqaskllthpalakaksa 133
                      +r+Er ++ sl +lgls+eqa++llth+ +a+a+s+
      CDO68442.1 408 AIRRERGIMLSLLSLGLSPEQAIELLTHRTIAEAQSS 444
                     ********************************99986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
                     T--EEEETTEEE-GGG-SHHHHHHHHHHHHH.....HHHHHGGGS--HHHH CS
  Thioredoxin_13  73 gqnalwlNGvaldesdidpfsLldlLrkErk.....llnslkklglsseqa 118
                      q  +++NG ++d +d    + l+lL+ E+      +  ++ k +l++e+a
      CDO68442.1 643 PQGHVFVNGKHFDLDD----EFLRLLQTEYTeqlqhFQMKVYKGELTDEDA 689
                     57789***********....6666666665422233555566666666665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
                     --TT--EEEETTEEE- CS
  Thioredoxin_13  70 vqpgqnalwlNGvald 85 
                     ++pg+ a+++NG+ + 
      CDO68442.1 877 LKPGEAAVIVNGRLVG 892
                     7899999999999875 PP

>> Thioredoxin_15  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8   4.7e+03      26     123 ..     500     597 ..     488     613 .. 0.72
   2 !  104.5   0.0   2.8e-33   7.3e-30      24     212 ..     746     945 ..     731     949 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
                     TT-EEEEEEE-TTSHHHHHHHHHHHHHHH.H-TTEEEEEEE--S--SS-THHHHHHHHHTGGGGCT-SSHHHHHHHHH.............---- CS
  Thioredoxin_15  26 lkpvtlwvvaDldseeGrkLLleAlkflk.sspgvRlgiihnpssdseasslissalsaalkklknlealefleklleeet.eellvsgmdkdaf 118
                     l+   +++++Dl + + ++++   +++l  +    R g++   ++++ a    +++++ +l++ +  e+l fl +l ++++  +ll +++d++a+
      CDO68442.1 500 LNMFNVVLAVDLSQASSLEFIGVTVNSLInRGLPFRWGVVPLVETEDGARM--ARLFYYLLENFGPDETLGFLLSLSQRNVpLDLLKPNVDWSAV 592
                     556667888888888888888888888775777888888888877766333..588888888889999999999998877776777777777777 PP

                     ---HH CS
  Thioredoxin_15 119 ekeln 123
                     + ++n
      CDO68442.1 593 RLNFN 597
                     66666 PP

  == domain 2  score: 104.5 bits;  conditional E-value: 2.8e-33
                     -TTT-EEEEEEE-TTSHHHHHHHHHHHHHHHH-TTEEEEEEE--S--SS-THHHHHHHHHTGGGGCT-SSHH.....HHHHHHH........... CS
  Thioredoxin_15  24 dklkpvtlwvvaDldseeGrkLLleAlkflksspgvRlgiihnpssdseasslissalsaalkklknleale.....fleklleeet..eellvs 111
                     ++   +t ++vaDldsee r +++e lk++k  + +Rl++ih ps++s+  +l +++ s  +  l + +al+     +l ++l  +   e+ +  
      CDO68442.1 746 TEQILLTTYIVADLDSEESRVIIKEVLKSIKPGSLSRLSFIHAPSTTSSVRDLPETTPSHIVGRLIAGNALSnvspeQLLNVLGLSDplEDNAQA 840
                     56667899***************************************888888444444333333333333322124666666655589555555 PP

                     ...-------HH...........HHHHHHHHHHHTT--TT-EEEEETTEEEEEESSTTSS-HHHHHHHHHHHHHHTHHHHHHHHHHHT-TTS--S CS
  Thioredoxin_15 112 gmdkdafekeln.....aeeakdylkalqkflrvlglepgqnavilNGRvvgpidedeefsaeDfelLesyerkkrikpvveaieelgleskisd 201
                      +++++ e+ l+      +++++yl+a + ++r+l+l+pg+ avi+NGR+vgp++ +  f+a+Dfe L ++e+ +r++pv++a+++++    +++
      CDO68442.1 841 PLSEKTAEELLSdvagsGAAYEQYLTACRLIVRKLELKPGEAAVIVNGRLVGPMPPS-AFLADDFEDLFAFEHLRRAQPVYQALSDVHEAIHEAS 934
                     55666666655566677888999**********************************.******************************9988899 PP

                     HHHHHHHHHHH CS
  Thioredoxin_15 202 sdlvakvtSlv 212
                       ++a ++S+ 
      CDO68442.1 935 REDLAEISSIA 945
                     99999999986 PP

>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.6e-09   9.1e-06      10     135 ..    1289    1405 ..    1281    1433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.6e-09
  Glyco_transf_8   10 YllgasvviksllknakepawfalnfhiltaeievenleklnklassykevlellesdkksledfesklklrspkylsllnylRlylpelf.p 101 
                      Y ++as++i s+l+++k    ++++f  ++  + +  le l + a +y   +el+  +  s+      l ++++k+  +  y  l+l  lf  
      CDO68442.1 1289 YERFASIMILSVLRHTK----SSVKFWFIDNFLSPSFLEFLPEFAAEYGFQYELVTYKWPSW------LRAQTEKQRIIWAYKILFLDVLFpM 1371
                      778999***********....899999999999***************99887777766665......5667777777888888888888888 PP

  Glyco_transf_8  102 kldkilylDaDvvvqgdlseLwdldlkgkvlaav 135 
                      +l+k++++DaD +v  dl+eL dldl g   + v
      CDO68442.1 1372 DLKKVIFVDADQIVRADLKELVDLDLHGAPYGYV 1405
                      **************************99887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.53
# Mc/sec: 8870.73
//
Query:       CDO68443.1  [L=849]
Description: hypothetical protein BN946_scf184704.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-73  245.9   0.0    6.9e-73  245.3   0.0    1.3  1  Pkinase        Protein kinase domain
    1.9e-44  151.9   0.0    3.3e-44  151.1   0.0    1.3  1  Pkinase_Tyr    Protein tyrosine kinase
    1.1e-37  128.0   1.3    2.6e-19   69.2   0.2    2.6  2  POLO_box       POLO box duplicated region
    3.8e-08   33.0   0.0    1.5e-06   27.8   0.0    2.4  2  Kinase-like    Kinase-like
     0.0011   18.0   0.0     0.0022   17.0   0.0    1.5  1  Haspin_kinase  Haspin like kinase domain
     0.0043   16.4   0.1      0.024   14.0   0.1    2.1  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.015   15.4  13.2      0.023   14.7   1.6    3.3  3  DUF2076        Uncharacterized protein conserved in bacteria 
       0.04   14.0   0.1       0.13   12.4   0.1    1.8  1  DUF4520        Domain of unknown function (DUF4520)
       0.15   12.2   0.1        2.5    8.2   0.1    2.9  2  DUF1156        Protein of unknown function (DUF1156)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.3   0.0   3.4e-76   6.9e-73       4     264 .]      82     334 ..      79     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: 245.3 bits;  conditional E-value: 3.4e-76
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeak 101
                 +  lGeG+f++Vy++  +++g+  A+K++ k++ k kk  +k+ +Eiki+k+l+hpnivr+ ++fe++ ++y+ le++++g+l+d+l+r++ ++e ea+
  CDO68443.1  82 VGMLGEGGFARVYEVQ-DARGHRSACKVVTKSSLKTKKAkTKLYAEIKIHKSLEHPNIVRFQDCFEDDANVYMTLELCHNGSLMDMLRRRKRFTEPEAR 179
                 5689**********99.699999********99998887799********************************************************* PP

                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppf 197
                  ++ q++ + +y+H++++iHrDlK  Ni++d++ ++K++DFGla+ +es  + +++++gt++Y+APEvl  ++n++s +vD Ws Gvily+l+ g+ppf
  CDO68443.1 180 YFMVQLIGACHYMHNHQVIHRDLKLGNIFLDRNMNVKVGDFGLAALIESPGErKKTICGTPNYIAPEVLfdTANGHSFEVDTWSTGVILYTLVVGRPPF 278
                 *******************************999**************998889****************999************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 + ++ k  ++            +++++ ++p ++ +s+ +++l++++l+ dp++R++ +++++hp++
  CDO68443.1 279 QTKDVKAIYK-----------RIRDNEYEFPADRVVSRLVQELVQQILTPDPQQRPSLHDIVEHPWF 334
                 *444444333...........3445699**************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.0   1.6e-47   3.3e-44       6     257 ..      84     330 ..      79     331 .. 0.92

  Alignments for each domain:
  == domain 1  score: 151.1 bits;  conditional E-value: 1.6e-47
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlk 103
                   lGeG f++V+e +   + +++ +kV+ K+  +++  + k++l+ e+ki k+l+hpniv++  +  ++ ++++ +e++++G+L ++Lr++  +++t  
   CDO68443.1  84 MLGEGGFARVYEVQDA-RGHRSACKVVTKSSLKTK--KAKTKLYAEIKIHKSLEHPNIVRFQDCFEDDANVYMTLELCHNGSLMDMLRRR--KRFTEP 176
                  69**********9988.899999999999995544..4469************************************************8..99**** PP

                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                  +   f++q+  +++y+++++++Hrdl   N++l++n+ vk++DfGLa  i  ++  ++k++     +++apE+l+++    + + D Ws Gv+l+ ++
   CDO68443.1 177 EARYFMVQLIGACHYMHNHQVIHRDLKLGNIFLDRNMNVKVGDFGLAALI--ESPGERKKTICGTPNYIAPEVLFDTAngHSFEVDTWSTGVILYTLV 272
                  **************************************************..444444555556669********99877899**************9 PP

                  TTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 200 tlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                    g+ p+++ + + +++++ +++++ ++ + +++ ++el+++ ++ dp++Rp+++++ve
   CDO68443.1 273 V-GRPPFQTKDVKAIYKRIrDNEYEFPADRVVSRLVQELVQQILTPDPQQRPSLHDIVE 330
                  9.*****************778899*******************************997 PP

>> POLO_box  POLO box duplicated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.2   1.3e-22   2.6e-19       2      64 .]     626     691 ..     625     691 .. 0.92
   2 !   57.4   0.1     6e-19   1.2e-15       1      62 [.     727     803 ..     727     805 .. 0.87

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.3e-22
                 TTSEEEEEETTS-EEEEETTTEEEEEETTTTEEEEE-T.....T--EEEEECCHHC--HHHHHHHHHH CS
    POLO_box   2 tkygigyqLsdgtvgVnFnDhtkiilspdgkavtyidr.....qgerstytlsesgcpeelkkkltll 64 
                 +kyg+gy L+dg+vgV+FnD+t+++lspd+ +++y+++      + r+++t+   ++pe+lk+k++ll
  CDO68443.1 626 NKYGMGYALTDGSVGVHFNDSTTVVLSPDKHHFDYVSSrqqgaVYVRKNHTVA--EYPEDLKSKVYLL 691
                 9*************************************887777777888887..**********996 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 6e-19
                 CTTSEEEEEETTS-EEEEETTTEEEEEETTTTEEEEE-TT--EEEEECCH...............HC--HHHHHHHH CS
    POLO_box   1 stkygigyqLsdgtvgVnFnDhtkiilspdgkavtyidrqgerstytlse...............sgcpeelkkklt 62 
                 ++k+ i+++Ls++ +++nF+Dhtk+ils++g  vt+id++++ +++tl e                ++ + l +kl+
  CDO68443.1 727 RMKQVIVFKLSHDVLQFNFYDHTKVILSSQGLVVTHIDKNYNLTRHTLAEvmaqalrgrpavpdqAKFQQRLVDKLK 803
                 79**********************************************99998888666666655555567777776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.037        74      13      58 ..      78     122 ..      70     140 .. 0.79
   2 !   27.8   0.0   7.4e-10   1.5e-06     129     288 .]     162     322 ..     148     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.037
  Kinase-like  13 tlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdler 58 
                  +++r+ +l++g++  v+ev+d   g   a kv +  s   kk+  +
   CDO68443.1  78 EFIRVGMLGEGGFARVYEVQDAR-GHRSACKVVTKSSLKTKKAKTK 122
                  5699*****************98.9999999998888555554444 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 7.4e-10
  Kinase-like 129 kvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft..aLvra.gtkvvl.sevekgfaPpEllgsrggytrk 222
                  ++++    +++  e  ar  + +qli    ++++++++h +++  n++ld++  +++g+f+  aL+   g++ +    +++  aP  l+  ++g    
   CDO68443.1 162 SLMDMLRRRKRFTEPEARYFM-VQLIGACHYMHNHQVIHRDLKLGNIFLDRNMNVKVGDFGlaALIESpGERKKTiCGTPNYIAPEVLFDTANG---- 254
                  556666666666777888888.************************************996437776535554432445555555555555555.... PP

  Kinase-like 223 nktkmthkldaWqlGlviyriwclklPltlateeak......eewkfklckkipekvkaLlkkfLqlsqedR 288
                       ++++d+W  G+  y +     P++ +  +a+      +e++f   + ++  v+ L++++L ++ ++R
   CDO68443.1 255 ----HSFEVDTWSTGVILYTLVVGRPPFQTKDVKAIykrirdNEYEFPADRVVSRLVQELVQQILTPDPQQR 322
                  ....79*********************976655543111112466888888999999999999998887766 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06    0.0022     170     257 ..     137     226 ..      72     259 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
  Haspin_kinase 170 kvlkekpdfyseqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyv.aEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    ++++ +  f+++ ++++ l+l ++G+ ++ + + k + +    ++ +  i +     + +  HRdL+l+ni +d+n+nv + d+ l+ l 
     CDO68443.1 137 NIVRFQDCFEDDANVYMTLELCHNGSLMDMLrRRKRFTEPEARYFMVQLIGAChYMHNHQVIHRDLKLGNIFLDRNMNVKVGDFGLAALI 226
                    33443434556778999999999999888774444455444444444444332134688999**********************998765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.2e-05     0.024      98     155 ..     156     213 ..     149     233 .. 0.83
   2 ?   -1.2   0.0      0.56   1.1e+03     175     192 ..     358     377 ..     354     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
         Kdo  98 rlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 +l +  +L d+l++ ++  + e +  +++ +g+  + +h+ +v H+dl   ni+l+ + 
  CDO68443.1 156 ELCHNGSLMDMLRRRKRfTEPEARYFMVQLIGA-CHYMHNHQVIHRDLKLGNIFLDRNM 213
                 566677999999997777778888888888886.699******************9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.56
         Kdo 175 adrwrekdLarLkrsfl..k 192
                  ++ +e++LarL r++l  +
  CDO68443.1 358 SRQMSEANLARLRRYALldE 377
                 5778899*******987541 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   4.9     0.069   1.4e+02     102     140 ..      25      57 ..       6      91 .. 0.42
   2 ?    0.0   0.0      0.36   7.1e+02      39      50 ..     175     186 ..     168     186 .. 0.87
   3 ?   14.7   1.6   1.2e-05     0.023      62     146 ..     486     571 ..     476     599 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.069
     DUF2076 102 rpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqy 140
                 +++p+p   p+++ +q+ +q++++a++p        p++
  CDO68443.1  25 QHPPPPGTPPKQKEQQQKEQQQKQASSPP------LPRQ 57 
                 11222222222222222222222222222......2222 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.36
     DUF2076  39 qPaApYylaQtv 50 
                 +P+A Y+++Q +
  CDO68443.1 175 EPEARYFMVQLI 186
                 7*********75 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.2e-05
     DUF2076  62 ariqeLeaqlqqlqqqaqeaqaqpssggFLsglFGggkke.rpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaa 146
                 ar++eL+++  ++q+++  aq  p+ g+  ++lFGg +++ ++ p+p+ r a  +++  +++++++++++ +++q++p++++   +
  CDO68443.1 486 ARVEELRKKELESQKARIVAQMVPAPGSAPGSLFGGDDQDlENMPPPRTRDAVRNQKERERQKEEREREQREEKQEEPRQAKDVTS 571
                 899***99987888888888999999**************7555555555555555555555555555555557889987766554 PP

>> DUF4520  Domain of unknown function (DUF4520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.5e-05      0.13      12      43 ..     626     657 ..     622     680 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-05
     DUF4520  12 pglGrFtAysdgrVhvvFeDrtvLnlvwdfss 43 
                 +++G+  A++dg V v+F+D t+  l++d ++
  CDO68443.1 626 NKYGMGYALTDGSVGVHFNDSTTVVLSPDKHH 657
                 5678889*******************999887 PP

>> DUF1156  Protein of unknown function (DUF1156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.6   1.2e+03      29      40 ..     430     441 ..     406     452 .. 0.79
   2 ?    8.2   0.1    0.0013       2.5      33      62 ..     495     524 ..     492     556 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.6
     DUF1156  29 WaRrPLaaaRAv 40 
                  aR+PL++a Av
  CDO68443.1 430 SARQPLIVAPAV 441
                 49******9887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
     DUF1156  33 PLaaaRAvifaqLvpdpsseleegktkeea 62 
                  L   +A i aq+vp+p+s + ++   +++
  CDO68443.1 495 ELESQKARIVAQMVPAPGSAPGSLFGGDDQ 524
                 567789************976665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      795  (0.0443416); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 5026.93
//
Query:       CDO68444.1  [L=228]
Description: hypothetical protein BN946_scf184704.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.02   15.1   1.1       0.02   15.1   1.1    2.2  2  CENP-Q         CENP-Q, a CENPA-CAD centromere complex subunit
      0.025   14.9   0.3      0.051   13.9   0.3    1.5  1  DUF3713        Protein of unknown function (DUF3713)
      0.028   14.2   0.6       0.19   11.5   0.0    2.3  2  Nsp1_C         Nsp1-like C-terminal region
      0.053   11.4   1.0      0.066   11.1   1.0    1.1  1  V_ATPase_I     V-type ATPase 116kDa subunit family
      0.069   12.8   0.3        0.2   11.3   0.3    1.8  1  DUF2934        Protein of unknown function (DUF2934)
      0.097   13.1   1.8        2.3    8.8   0.4    3.1  3  NPV_P10        Nucleopolyhedrovirus P10 protein
      0.097   13.3   2.5        0.2   12.3   1.5    2.1  2  FOXP-CC        FOXP coiled-coil domain
       0.17   12.5   5.0         28    5.4   1.4    3.6  3  SlyX           SlyX
        0.5   10.7   5.5       0.44   10.9   0.6    2.8  3  TBCA           Tubulin binding cofactor A
       0.55   10.3  11.0       0.22   11.6   2.4    2.3  2  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
       0.61   10.3   3.2       0.88    9.8   3.2    1.3  1  MutS_III       MutS domain III
       0.77    9.8   3.7        5.4    7.0   3.7    2.2  1  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
        1.7    9.1   9.6        6.5    7.2   2.6    2.4  2  DUF4200        Domain of unknown function (DUF4200)
        2.5    6.6   5.9          3    6.3   5.9    1.1  1  FUSC           Fusaric acid resistance protein family
        3.9    7.0   6.3         26    4.3   0.2    2.5  2  Fzo_mitofusin  fzo-like conserved region
        6.3    6.7   7.8       0.41   10.4   1.4    2.4  3  DivIC          Septum formation initiator


Domain annotation for each model (and alignments):
>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.4      0.79   8.8e+02      28      45 ..      61      78 ..      19      85 .. 0.65
   2 ?   15.1   1.1   1.8e-05      0.02      31      85 ..     104     161 ..     103     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.79
      CENP-Q 28 eklldekaaleaqLspel 45
                 +++ +  ale++L++  
  CDO68444.1 61 ARASTRLEALERELRTIA 78
                334444444444444433 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.8e-05
      CENP-Q  31 ldekaaleaqLspelhslelLeaeiekeerale...rdyeaLreLeknakaearerke 85 
                 +++ka+lea+ + +++++++L++e++++ ++ +   +  + Lre+ +na+a+ + ++ 
  CDO68444.1 104 VKAKAQLEAETTKQRKAVDKLQQERDRLFELDKsvdKIVNVLREFANNANALVNAWEA 161
                 6799**********************98776550005567899*******99999886 PP

>> DUF3713  Protein of unknown function (DUF3713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   4.6e-05     0.051      14      71 ..     107     169 ..      97     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.6e-05
     DUF3713  14 kvkkeetttskeksvnklKtkdik........vkklkdkkekvetkakslvekLkvttapsstySq 71 
                 k + e  tt++ k+v kl +++ +        v+k+++ + +  ++a+ lv+++ ++  + +++S+
  CDO68444.1 107 KAQLEAETTKQRKAVDKL-QQERDrlfeldksVDKIVNVLREFANNANALVNAWEAQ--IINQFSE 169
                 44445568899999****.555556*****************************975..6677776 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.47   5.2e+02      30      47 ..      66      83 ..      54     145 .. 0.67
   2 ?   11.5   0.0   0.00017      0.19      36     101 ..     146     212 ..     131     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.47
      Nsp1_C 30 eLeeqekeFeeqakkvne 47
                 Le  e+e ++ a+k++e
  CDO68444.1 66 RLEALERELRTIAEKIAE 83
                344444444444444443 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00017
      Nsp1_C  36 keFeeqakk.vneWDrvLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkel 101
                 +eF + a+  vn+W+  +++  +++ +L + v+  e+ ++    +L++ +   + L+++L +y + l
  CDO68444.1 146 REFANNANAlVNAWEAQIINQFSELDALLETVVCGEHVTSFFGTKLDITHDAYEKLKDMLYKYSRAL 212
                 67888887549***************************************************98766 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   5.9e-05     0.066      30     126 ..      65     155 ..      49     218 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
  V_ATPase_I  30 rrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeee 126
                  r++ +er+lr + e+i++ +++  +++      +   +k+l +++++  +le+e +++++  +kl++e+ +l el + + k+ ++l+e ++++++ 
  CDO68444.1  65 TRLEALERELRTIAEKIAE-NDIAFSASL----AHCLLHKHLPDVKAKA-QLEAETTKQRKAVDKLQQERDRLFELDKSVDKIVNVLREFANNANAL 155
                 6899999999999999999.444444443....3444555555655553.46666666666666666666666666666666666665442222222 PP

>> DUF2934  Protein of unknown function (DUF2934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00018       0.2       8      19 ..      43      54 ..      42      55 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
     DUF2934  8 erAYelWErrGr 19
                erAYel+Er+Gr
  CDO68444.1 43 ERAYELAERKGR 54
                8**********8 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.8   3.1e+03      27      52 ..      11      36 ..       6      44 .. 0.74
   2 ?    1.7   0.0      0.33   3.7e+02      41      60 ..      64      83 ..      56     106 .. 0.77
   3 ?    8.8   0.4     0.002       2.3      30      66 ..     110     146 ..      95     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.8
     NPV_P10 27 vddvqenlpdvtelnekLdaqsaqLa 52
                ++ +qen ++ +e+ +++ +  +++ 
  CDO68444.1 11 LQAIQENQETSKEIRSRFSRFCDEVC 36
                56788888888888888877666665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.33
     NPV_P10 41 nekLdaqsaqLaeletkven 60
                +++L+a+  +L ++ +k+ +
  CDO68444.1 64 STRLEALERELRTIAEKIAE 83
                56788888888888887754 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.002
     NPV_P10  30 vqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                 ++++  +  +  +kL++  + L el+++v++I ++L 
  CDO68444.1 110 LEAETTKQRKAVDKLQQERDRLFELDKSVDKIVNVLR 146
                 55555555677899********************997 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.2   4.7e+03      39      55 ..      59      75 ..      32      85 .. 0.59
   2 ?   12.3   1.5   0.00017       0.2      21      62 ..      91     132 ..      78     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.2
     FOXP-CC 39 qlrvqmqvvqqlekqlv 55
                ++   + ++++le++l+
  CDO68444.1 59 ECARASTRLEALERELR 75
                34444445555555554 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
     FOXP-CC  21 eflkhlnseHalddkstaqlrvqmqvvqqlekqlvkEkerLq 62 
                 ++ + l ++H +d k+ aql++   + ++  ++l++E++rL 
  CDO68444.1  91 SLAHCLLHKHLPDVKAKAQLEAETTKQRKAVDKLQQERDRLF 132
                 455557799*******************************95 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.028        31      24      51 ..      58      85 ..      48      94 .. 0.83
   2 ?    5.4   1.4     0.025        28      21      45 ..     109     133 ..     105     155 .. 0.83
   3 ?    0.2   0.0         1   1.2e+03      11      34 ..     190     213 ..     189     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.028
                HHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
        SlyX 24 dvvaeqqqqidrlqrqlrllaerlkele 51
                d+ a+   ++++l+r+lr +ae+++e +
  CDO68444.1 58 DECARASTRLEALERELRTIAEKIAEND 85
                566788889999*********9997765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  21 eLndvvaeqqqqidrlqrqlrllae 45 
                 +L ++ ++q++ +d+lq++ ++l e
  CDO68444.1 109 QLEAETTKQRKAVDKLQQERDRLFE 133
                 7888999999999999999888765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  11 klafqedtieeLndvvaeqqqqid 34 
                 kl  + d+ e+L d++++  + ++
  CDO68444.1 190 KLDITHDAYEKLKDMLYKYSRALA 213
                 566677889999999999888765 PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.63   7.1e+02      48      74 ..      12      38 ..       8      52 .. 0.80
   2 ?   10.9   0.6   0.00039      0.44      12      77 ..     104     176 ..     102     185 .. 0.82
   3 ?   -2.4   0.0       5.5   6.2e+03      66      78 ..     196     208 ..     194     214 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.63
        TBCA 48 evleetkamipdlkkrlekavekLeel 74
                ++++e ++  +++++r++ ++++   +
  CDO68444.1 12 QAIQENQETSKEIRSRFSRFCDEVCTF 38
                689999999999999999999887555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00039
        TBCA  12 vKEeasYekEleeqearleklkadgdedeydlkkq........eevleetkamipdlkkrlekavekLeellee 77 
                 vK +a  e E+ +q++ ++kl+++ d+  ++l k         +e  + ++a++   +  + +++ +L++lle+
  CDO68444.1 104 VKAKAQLEAETTKQRKAVDKLQQERDR-LFELDKSvdkivnvlREFANNANALVNAWEAQIINQFSELDALLET 176
                 577888999**************7744.6666666666666669999999999999999999999999999987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.5
        TBCA  66 kavekLeelleee 78 
                 +a+ekL+++l ++
  CDO68444.1 196 DAYEKLKDMLYKY 208
                 6888888887655 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.6     0.058        66      53     118 ..       8      73 ..       2      93 .. 0.80
   2 ?   11.6   2.4    0.0002      0.22      41      97 ..     106     162 ..      96     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.058
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneq 118
                 +  ++++q+  e ++e++++ + + +e+ + + ++e++ e  e++     +e + + +r+e l+  
  CDO68444.1   8 SRPLQAIQENQETSKEIRSRFSRFCDEVCTFNLDMERAYELAERKGRLVHDECARASTRLEALERE 73 
                 556788888888888889999999999999988888888888888888888888888888888765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0002
  TPR_MLP1_2  41 aqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeq 97 
                 a+ + e e +k+ ++v++lq+ r++l el + + ++ + + +  ++ ++  ++we q
  CDO68444.1 106 AKAQLEAETTKQRKAVDKLQQERDRLFELDKSVDKIVNVLREFANNANALVNAWEAQ 162
                 6677899*******************9999999998888888888888888888876 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2   0.00079      0.88      56     186 ..      12     172 ..       7     214 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00079
                 HHHHHT..TT.HHHHHHHHTT--........-HHHHHHHHHTT---..HHH.......HHHHHHHHHHHHTTTTT---SSTHHHHH............H CS
                 xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx..xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx............x RF
    MutS_III  56 daVeeleneelreelrellrrlp........DleRllsrislgkak..ard.......lkallealkaleelvallekeklaesee............e 125
                 +a++e  n+e+++e+r+ + r+         D+eR+   ++ +k++   ++       l+al + l++++e++a          +             +
  CDO68444.1  12 QAIQE--NQETSKEIRSRFSRFCdevctfnlDMERAYE-LAERKGRlvHDEcarastrLEALERELRTIAEKIAEN--------DIafsaslahcllhK 99 
                 56665..4666788888877744588888899***994.4444443212232111122333444444433322222........112333344344432 PP

                 HHHHHHHHHB-SS--SSGGGS--B-T.............................HHHHHHHHHHHHHHHHHHTHHHHH.HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
    MutS_III 126 slaelleeaideeplalekegedlra.............................iealeqelfqelleeveealerlr.rlaealaeLDv 186
                 +l +   +a +e +++++++  d+ +                             +                  +++++ ++++  +eLD+
  CDO68444.1 100 HLPDVKAKAQLEAETTKQRKAVDKLQqerdrlfeldksvdkivnvlrefannanaL------------------VNAWEaQIINQFSELDA 172
                 23333334444444444444444444566666654443322222222222222220..................33333123344444444 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.7    0.0048       5.4      30      94 ..     108     174 ..      47     180 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0048
  Baculo_PEP_C  30 vqilaqlatlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrneLtnlnsil 94 
                   +q+ a+ +++ +a+++ L++  ++l +l +++d+    l ++++n ++ +na + ++ n+   l++ l
    CDO68444.1 108 AQLEAETTKQRKAVDK-LQQERDRLFELDKSVDKivnVLREFANNANALVNAWEAQIINQFSELDALL 174
                   2222333332222222.222222222222222222224444444444444444444444444444444 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.6    0.0058       6.5      34     106 ..      12      84 ..       3      87 .. 0.92
   2 ?    5.9   0.6     0.015        17      74     103 ..     106     135 ..     102     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0058
     DUF4200  34 eelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleey 106
                 ++++++++  +e   +f +f  e      + ++ +e  +++ +    e +++ + +e+l+ e++  +ek++e 
  CDO68444.1  12 QAIQENQETSKEIRSRFSRFCDEVCTFNLDMERAYELAERKGRLVHDECARASTRLEALERELRTIAEKIAEN 84 
                 567888888999999******************************************************9985 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.015
     DUF4200  74 lkkekeaeikklkaeietlkseiekleekl 103
                 +k + eae  k ++ +++l++e+++l e  
  CDO68444.1 106 AKAQLEAETTKQRKAVDKLQQERDRLFELD 135
                 455555555555555555555555543333 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.9    0.0027         3     179     334 ..      17     161 ..       6     178 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
        FUSC 179 geegaeareaararlaadilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealea 277
                 ++e+++++++++ r+ +++ +++   + a ye ++     r+ r  + + ++++++l +l+r+l++  ++ a+   +++a la++  +     +  + +
  CDO68444.1  17 NQETSKEIRSRFSRFCDEVCTFNLDMERA-YELAE-----RKGRLVHDECARASTRLEALERELRTIAEKIAENDIAFSASLAHCLLH----KHLPDVK 105
                 55566666666666666666666665543.55555.....7778899999**********************9999999999999884....3444445 PP

        FUSC 278 alaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaarra 334
                 a a+l+a+ +++r+a ++ ++ +++ l +l+  +++ +++l+++++ ++a ++a++a
  CDO68444.1 106 AKAQLEAETTKQRKAVDKLQQERDR-LFELDKSVDKIVNVLREFANNANALVNAWEA 161
                 5555555555555555533333333.3456666666666666666666666654443 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.023        26      93     127 ..      18      52 ..      10      91 .. 0.70
   2 ?    4.2   1.5     0.026        29     113     157 ..     106     150 ..      98     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.023
  Fzo_mitofusin  93 hqvqqelsstfarlcqqvdetekeleeeikeleke 127
                    +   +e+ s f+r+c +v + + ++e+  +  e++
     CDO68444.1  18 QETSKEIRSRFSRFCDEVCTFNLDMERAYELAERK 52 
                    55678999999999999999999998876665555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.026
  Fzo_mitofusin 113 tekeleeeikelekeiekleevqkkakllrnkaslleseLekfee 157
                    ++++le+e+++ +k ++kl++   ++  l +   ++ + L++f++
     CDO68444.1 106 AKAQLEAETTKQRKAVDKLQQERDRLFELDKSVDKIVNVLREFAN 150
                    6889**********************************9999987 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.4   3.8e+03      38      48 ..      15      25 ..       9      30 .. 0.62
   2 ?   -2.0   0.1       2.8   3.1e+03      20      31 ..      68      79 ..      56      85 .. 0.50
   3 ?   10.4   1.4   0.00037      0.41      18      46 ..     106     134 ..     101     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.4
                HHHHHHHHHHC CS
       DivIC 38 aeneeLeaevk 48
                +en+e  +e++
  CDO68444.1 15 QENQETSKEIR 25
                45555555554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
                HHHHHHHHHHHH CS
       DivIC 20 kqlkqeiaalqa 31
                 +l++e+ ++ +
  CDO68444.1 68 EALERELRTIAE 79
                233333333333 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00037
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeae 46 
                 a  ql++e +++ + ++kl++e+++L + 
  CDO68444.1 106 AKAQLEAETTKQRKAVDKLQQERDRLFEL 134
                 567999*****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1504  (0.0838864); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 1468.42
//
Query:       CDO68445.1  [L=329]
Description: hypothetical protein BN946_scf184760.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-05   25.3   0.6    3.1e-05   24.2   0.6    1.6  1  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.6   1.7e-09   3.1e-05       5      81 ..      70     150 ..      66     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.7e-09
  Retrotrans_gag   5 tslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqldevl 81 
                     +  +g+   ++k+  +rs ++     +++ + + ka+ + f ++++k++++++l sl+  + s +e++t+f++l++ ++  l
      CDO68445.1  70 SYIQGERVDIWKEAFSRSNYEngawkFDTLDAFWKALDTVFNDPNVKHTAQAKLESLKM-KGSAQEFFTEFEQLVTLANYDL 150
                     56778888889999899888889999999999999999999999999************.***************9988544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2368.69
//
Query:       CDO68446.1  [L=377]
Description: hypothetical protein BN946_scf184760.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2618.38
//
Query:       CDO68447.1  [L=424]
Description: hypothetical protein BN946_scf184760.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-24   86.1   0.5      3e-21   76.0   0.2    2.3  2  tRNA_m1G_MT      tRNA (Guanine-1)-methyltransferase
  ------ inclusion threshold ------
        4.7    6.7  20.0        0.9    9.1  13.8    2.5  2  SR-25            Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00018       1.6       2      31 ..     127     156 ..     126     182 .. 0.84
   2 !   76.0   0.2   3.3e-25     3e-21      77     195 .]     242     343 ..     199     343 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00018
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEE CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvdde 31 
                  + + e+e  sl +ql + y+anr+++ ++ 
   CDO68447.1 127 EMMTENEVKSLTSQLAYTYSANRKAENPFS 156
                  6799**********************9985 PP

  == domain 2  score: 76.0 bits;  conditional E-value: 3.3e-25
                  HHHCGGGEEEEETTTSSBECCGGTTSSEEEEEESSSSTTCSTTHHHHHHHHHHHHTTTC.EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHC CS
  tRNA_m1G_MT  77 eLsekeklvylcgdyegvdervdddkvdeysIGdfVlkggekgalvlidavkrllaGvlntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgn 174
                  + + k+++vyl++d++  +++++++   +y+IG++V+++++k++    +++k++ + +   a+lp+  +   l e    +++lt++  + +eiLl++ 
   CDO68447.1 242 SRAAKDTVVYLTADADDELTELKEGE--TYIIGGIVDHNRYKNL----CLNKSKVQQIR-SARLPIGTY---LSELRT-RKVLTVN--QTFEILLKWV 326
                  446789********************..****************....***********.*********...888886.*******..********** PP

                  CCTTTHHHHHHHHHHHSCSXS CS
  tRNA_m1G_MT 175 hakienWrlkealertvprRk 195
                  +  ++nW  ++al +++p+Rk
   CDO68447.1 327 E--TRNW--EQALYSVIPKRK 343
                  *..****..***********8 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  13.8    0.0001       0.9      61     148 ..      18     111 ..       2     114 .. 0.54
   2 ?    0.4   0.4     0.047   4.3e+02     171     208 ..     245     282 ..     199     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0001
       SR-25  61 rrssssssssssssssssssssssssdd.....rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaeaaaaealpgpsldqwqk..eaeeedGP 148
                 ++ +s+++++  ++s s+s ++ + s+      +kk +k     ++kk++ +   ke++k+k++  ae++aa +l   ++ q+qk   + +++GP
  CDO68447.1  18 QADASAQQTAVQPASASASPAADTPSQPlskkaQKKLAKAAYLAERKKER-RAAEKERRKEKKRLLAEKRAAGELDPEEVAQLQKrkRQRTDKGP 111
                 23333333333333333333333333332111144444443334444444.66777788888888899999989988889988872244567888 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.047
       SR-25 171 aRqsviRkvvDPetgRtRLikGdgevleeivskerHke 208
                 a+  v+    D +   t L +G+  ++  iv ++r+k+
  CDO68447.1 245 AKDTVVYLTADADDELTELKEGETYIIGGIVDHNRYKN 282
                 45555666666666677777788888888887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1999  (0.111495); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 2992.39
//
Query:       CDO68448.1  [L=298]
Description: hypothetical protein BN946_scf184760.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-08   33.0   0.0    3.8e-06   26.8   0.0    2.3  2  Methyltransf_23  Methyltransferase domain
    7.1e-05   23.4   0.0    0.00015   22.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    0.00037   21.2   0.0    0.00087   20.0   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.047   14.4   0.0       0.13   13.0   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
       0.11   12.3   0.0       0.26   11.1   0.0    1.8  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.013        45       4      33 ..      66      96 ..      63     102 .. 0.83
   2 !   26.8   0.0   1.1e-09   3.8e-06      84     164 ..     119     204 ..      97     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
  Methyltransf_23  4 qreeelsdklerllpk.lraggrvLdiGcGt 33
                     ++++e++d+l++ ++  +r+   vLd+G G 
       CDO68448.1 66 YVRNEVADNLAERFQDiKRKFHTVLDLGSGP 96
                     6788999999887755489999******995 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.1e-09
  Methyltransf_23  84 dlIvlrevlehvpdppellrqiatllkpgGylllseplasl..kedrllldwlylvpag..rhi.sffsarslkelleeaGlevve 164
                      + Iv+  +l++v d+p +l qi++ lkp+G++l   ++ +   + + +l+  + +++ g   h+  + ++r++ +ll +aG+++++
       CDO68448.1 119 EAIVSCLSLHWVNDLPGVLVQIKEALKPDGVFLGALFGGDTlfELRTSLQLAEVEREGGisAHVsPMTDSRDMSNLLSRAGFTLLT 204
                      5689999******************************8887655777788888888777997877999**************9876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.2e-08   0.00015      44      95 ..      98     151 ..      51     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.2e-08
                      EEEETTEECCCT.S.S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  44 kvefvvadaekl.p.fednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      +ve ++ad e+l + ++ ns  ++vs  +lh+v+d+  +l +i+  Lkp+G+++
       CDO68448.1  98 EVERIHADEENLlQvIQPNSQEAIVSCLSLHWVNDLPGVLVQIKEALKPDGVFL 151
                      567799999996565888*********************************985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.4e-07   0.00087      48      99 .]      99     150 ..      57     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.4e-07
  Methyltransf_12  48 nnnvelealdlldldgg............ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                      ++++                         +s  ++v++  lh+++d+  vl +i+++Lkp+G++
       CDO68448.1  99 VERI------------HadeenllqviqpNSQEAIVSCLSLHWVNDLPGVLVQIKEALKPDGVF 150
                      2233............23334445666669********************************86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.6e-05      0.13      45      97 .]      95     148 ..      70     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                      TT.TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  45 gl.nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      g+ +ve +++d e+l    + +s  ++vs+ +lh+++  dl+ +l +i+++Lkp+G
       CDO68448.1  95 GPvEVERIHADEENLLqvIQPNSQEAIVSCLSLHWVN--DLPGVLVQIKEALKPDG 148
                      4458888999999976334889999***987799877..9***************9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.2e-05      0.26      59     113 ..     102     156 ..      40     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.2e-05
  Methyltransf_31  59 eqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                       ++d e+l + +++++   i+s   l+ ++d++ +l +i+++lkp+g++l + + 
       CDO68448.1 102 IHADEENLLQVIQPNSQEAIVSCLSLHWVNDLPGVLVQIKEALKPDGVFLGALFG 156
                      34666665544677999999999999**********************9966655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2065.87
//
Query:       CDO68449.1  [L=1201]
Description: hypothetical protein BN946_scf184760.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0025   18.4   8.1        1.1   10.0   1.1    3.5  3  FOXP-CC      FOXP coiled-coil domain
  ------ inclusion threshold ------
      0.011   16.0   4.9       0.03   14.6   3.6    2.2  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
      0.032   14.7  14.3        3.5    8.2   3.4    3.5  3  zf-C2H2      Zinc finger, C2H2 type
      0.059   14.2  13.0        7.3    7.7   2.7    3.5  3  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0011       4.8       7      27 ..     714     734 ..     710     741 .. 0.89
   2 !   10.0   1.1   0.00024       1.1       2      28 ..     743     769 ..     743     773 .. 0.88
   3 ?    2.8   0.2     0.041   1.9e+02      11      33 ..     785     807 ..     775     812 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
     FOXP-CC   7 CkWPgCekvledveeflkhln 27 
                 C W +C +vl+++++++kh+ 
  CDO68449.1 714 CLWANCGAVLNSMSTLQKHVV 734
                 *******************85 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00024
     FOXP-CC   2 fakgvCkWPgCekvledveeflkhlns 28 
                 ++  +C+W  C++ ++d +++ +hl++
  CDO68449.1 743 WGTYMCQWQSCSHRFSDEAKLAHHLRK 769
                 56679*******************986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.041
     FOXP-CC  11 gCekvledveeflkhlnseHald 33 
                  C+k ++++e+fl+h +s+ + d
  CDO68449.1 785 RCDKSFNTSEAFLAHHKSSKHRD 807
                 5*************998765554 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.42   1.9e+03       7      20 ..     719     732 ..     718     733 .. 0.86
   2 ?   14.6   3.6   6.7e-06      0.03       7      27 .]     786     806 ..     786     806 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.42
                  TTBBBSSHHHHHCC CS
  zf-C2H2_jaz   7 CdKyFksenaldnH 20 
                  C    +s+++l++H
   CDO68449.1 719 CGAVLNSMSTLQKH 732
                  777789******** PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.7e-06
                  TTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkSKkHK 27 
                  CdK F++++a+ +H kS kH+
   CDO68449.1 786 CDKSFNTSEAFLAHHKSSKHR 806
                  ********************7 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.018        80       3      23 .]     714     736 ..     713     736 .. 0.86
   2 ?    8.2   3.4   0.00079       3.5       1      23 []     746     770 ..     746     770 .. 0.95
   3 ?    8.0   1.1   0.00093       4.1       6      23 .]     786     805 ..     782     805 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.018
                 ET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   3 Cp..dCgksFkrksnLkrHirtH 23 
                 C    Cg + ++ s L++H   H
  CDO68449.1 714 CLwaNCGAVLNSMSTLQKHVVLH 736
                 55568**************9877 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00079
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y C    C+ +F++   L +H+r+H
  CDO68449.1 746 YMCQwqSCSHRFSDEAKLAHHLRKH 770
                 7899999*****************9 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00093
                 TTEEESSHHHHHHHHHC..C CS
     zf-C2H2   6 CgksFkrksnLkrHirt..H 23 
                 C+ksF++++ + +H ++  H
  CDO68449.1 786 CDKSFNTSEAFLAHHKSskH 805
                 **************987555 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0086        39       6      23 ..     719     736 ..     712     737 .. 0.85
   2 ?    7.7   2.7    0.0016       7.3       1      23 [.     746     770 ..     746     771 .. 0.91
   3 ?    6.6   0.7    0.0038        17       6      23 ..     786     804 ..     781     805 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0086
   zf-C2H2_4   6 CgksFsskkaLlrHlkth 23 
                 Cg++ +s ++L++H+  h
  CDO68449.1 719 CGAVLNSMSTLQKHVVLH 736
                 **************9888 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + C +  C+ +Fs+  +L +Hl++h
  CDO68449.1 746 YMCQWqsCSHRFSDEAKLAHHLRKH 770
                 6788888*****************9 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0038
   zf-C2H2_4   6 CgksFsskkaLlr.Hlkth 23 
                 C+ksF++++a+l  H  + 
  CDO68449.1 786 CDKSFNTSEAFLAhHKSSK 804
                 **********666165555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 7301.29
//
Query:       CDO68450.1  [L=978]
Description: hypothetical protein BN946_scf184760.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 6323.44
//
Query:       CDO68451.1  [L=1225]
Description: hypothetical protein BN946_scf184760.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.6e-113  377.9   0.0   1.2e-112  376.9   0.0    1.5  1  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    4.4e-36  124.3   0.0    7.2e-36  123.6   0.0    1.3  1  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    1.2e-28   99.1   0.0    3.2e-28   97.7   0.0    1.8  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    3.5e-24   84.6   0.0    9.4e-24   83.2   0.0    1.8  1  RNA_pol_Rpa2_4  RNA polymerase I, Rpa2 specific domain
    3.4e-22   79.0   0.0    8.1e-22   77.8   0.0    1.7  2  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
    4.1e-19   68.8   0.2    3.6e-15   56.1   0.1    2.7  2  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.9   0.0    4e-116  1.2e-112       1     390 []     699    1071 ..     699    1071 .. 0.92

  Alignments for each domain:
  == domain 1  score: 376.9 bits;  conditional E-value: 4e-116
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      +a+l+p+++ +qspr+i+q++m+kq++g+ ++   +r+++k+y+l++ q P+v+    ++ ++        ++ +++G+na+VAv+sy+GY++
      CDO68451.1  699 LANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALQHRTDNKLYRLQTGQSPIVRPA-LHNTYG--------MDSFPNGTNAIVAVISYTGYDM 782 
                      5899****************************************************.999999........9********************* PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..-..............-SS-GGGS-TTSB--SS-EEETT-EEE---..B- CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnv..............seealkkLdedGivrvgaevkegdilvgkvtkge 172 
                      EDa+iln+++ +r+++  +++k+y+v+ ++ ++++   + ++p+                + a +++d dG+++vga++++gd +  +v    
      CDO68451.1  783 EDAMILNKSAHERGFAYGTVYKSYTVDLQELTGSR--RVSSVPTLhfgfgpeiktdgprAHPACQHIDPDGLPCVGARLNPGDYIAAYV---- 869 
                      ***********************888885544333..23444444466777777888888999*************************8.... PP

                      ----...-----------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTS CS
  RNA_pol_Rpb2_6  173 teltpeekllraifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDm 265 
                                      + ++ +++  ++k +e ++Vd+v++     g++  ++  + ++++++ +R + +GDKf+srhGqKGv+s+ +p  Dm
      CDO68451.1  870 ----------------DDTTGRTKFAKYKGDEVAYVDTVRL----IGSDAGDQELQKINITLRITRAPVIGDKFSSRHGQKGVCSQKWPAIDM 942 
                      ................22335678899**************....6888888999************************************** PP

                      EEETTS---SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-......-.HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB- CS
  RNA_pol_Rpb2_6  266 PfledGivvDivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgak...e.eeikelLeeagleasGkevlydGrtGekleaeifvG 354 
                      Pf+e+G+++D+++NP+++PSRmtig+l+E+++gka+a++g   dat+F+ ++     e++ e+L  ag++++G+e +y+G+tG+++ a+i++G
      CDO68451.1  943 PFTESGMQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPFQFTEedtAiEYFGEQLLAAGYNYYGNEPMYSGITGQEFAADIYIG 1035
                      *************************************************98755436999********************************* PP

                      EEEEEEBS--CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  355 viYylkLkhlvedKihaRstGpyslltqQPlgGkaq 390 
                      ++Yy++L+h+v dK+++R+tGp++ +t+QP++G+++
      CDO68451.1 1036 CVYYQRLRHMVLDKFQVRTTGPVDPVTRQPVKGRKR 1071
                      **********************************86 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.0   2.4e-39   7.2e-36       3     188 ..      42     435 ..      40     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 2.4e-39
                     THHHHHHHHHH....................HHTHHHHHCTTSSECCHCSSSHCSSSCEEEEEEEEEEESCSSECTT..SCEEES.HHHHHHCTS CS
                     xxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   3 vsqqldSFnkf....................veqdlekiikeeaaieseeeiqssgeelelkfvsirlgkPvvdesd..asereiyPkearlrnl 75 
                     v ++++SFn++                    +e+  ++++ +     +  e+++ ++++ + + ++++g+P+v+e d  a+er++yP ear+r +
      CDO68451.1  42 VTPHIESFNALfddsglpagdgdgrgllhlgIEEIGKRVVFDGRG-DVGTESEYIIHSVPVWYDQVSVGRPMVSERDtqAKERRVYPAEARERLT 135
                     789*******99************************999999865.455556689999*****************65338899************ PP

                     BXEEEEEEEEEEEECCCCTCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE............... CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
  RNA_pol_Rpb2_1  76 tYsaplyvklklvvyekdnkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek............... 155
                     +Y++ + vk+ ++v    n    + e  ++G lP+M+rs +c+l ++s  elv+++E+p++ GGyFiinG+e++i+ ++                
      CDO68451.1 136 SYRGRMVVKICWQV----NDGPVEVEMRDCGLLPIMVRSARCNLRGMSSAELVKHHEEPEEFGGYFIINGNERLIRYLILprrhhvislvrpsfv 226
                     **************....799999999****************************************************99************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CDO68451.1 227 nrgpsytpyavqircvrpdqtsvtntlhylsngsamlrfswrkqeyvipimlilkalvsasdkeifegvmmqdyedtflsdrvelllrsfkmyql 321
                     *********************************************************************************************** PP

                     .................................................................................XHHHHHHHHHHHHH CS
                     .................................................................................xxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 .................................................................................laGeLlaslfrvll 169
                                                                                                      l+G L+ ++ +++l
      CDO68451.1 322 ytgdqclqylgdkfrvvvnlpedwtnqaigvwlinkvvlvhlrnprdkfrmllfmlrklyalvfkscsvdnpdspqhqevlLPGTLYGMIIKERL 416
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHCTSS CS
                     xxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 170 kklerdvkerlqkslekld 188
                     ++  ++++e + +++ + +
      CDO68451.1 417 EEALNAFREGIAMDVRNSN 435
                     ***********99998876 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.1e-31   3.2e-28       2      68 .]     487     551 ..     486     551 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.1e-31
  RNA_pol_Rpb2_3   2 vldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     v+++ln+++++sh+r+++  rg++++e ktt+vR+l p++wG++Cpv+TP+G++cGl+++L+ ++r+
      CDO68451.1 487 VAEKLNWMRYISHFRSIH--RGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTCRI 551
                     89****************..*********************************************98 PP

>> RNA_pol_Rpa2_4  RNA polymerase I, Rpa2 specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   3.1e-27   9.4e-24       1      58 []     593     650 ..     593     650 .. 0.99

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 3.1e-27
  RNA_pol_Rpa2_4   1 iGyvspkeakavaktLRrlKvegekkvpltlEIglvppskggqYpGLYlftspaRmmR 58 
                     iG++ ++ +k++a++LR +K+eg+++vpl+lEIglvp s+ggqYpGLYlf+s+aRmmR
      CDO68451.1 593 IGWAPAAVCKQLATSLRIWKTEGKHNVPLDLEIGLVPVSQGGQYPGLYLFSSRARMMR 650
                     8********************************************************9 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   2.7e-25   8.1e-22      16     189 ..     235     401 ..     213     402 .. 0.85
   2 ?   -4.2   0.0       3.6   1.1e+04     118     139 ..     432     453 ..     418     454 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2.7e-25
                     E...SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHT...SSSTTHHHHHHHHHHHHHHCTSSSCHHHHH CS
  RNA_pol_Rpb2_2  16 i...satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIleric...ydsedsqlleelleeleekeeiqtqeeald 104
                     +   ++ v+ +++s ++ +++l ++ + l++++++ ++ ipi+++lkAl   sd+eI+e++    y+++  ++  ell +  +  +++t +++l+
      CDO68451.1 235 YavqIRCVRPDQTSVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEIFEGVMmqdYEDTFLSDRVELLLRSFKMYQLYTGDQCLQ 329
                     1555699*******************************************************54446666677788999999999********** PP

                     HHHHCSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHHTTSSSS--TTSGGGEEE CS
  RNA_pol_Rpb2_2 105 yigkvvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkrlkaqdilymidrLlslklgrrevDDiDhlgnkRv 189
                     y+g+++++  + +++++++            i + +l+ hl    +      k++++l+m ++L+ l +++++vD+ D+ ++++v
      CDO68451.1 330 YLGDKFRVVVNLPEDWTNQAIGV------WLINKVVLV-HLRNPRD------KFRMLLFMLRKLYALVFKSCSVDNPDSPQHQEV 401
                     ****************9988333......357777777.7766555......*******************************98 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3.6
                     CCCCHHHHHHHCHHHHHHHTTT CS
  RNA_pol_Rpb2_2 118 arlqsareilqkrydlgeigre 139
                      ++ +a ++++kry++ +++r 
      CDO68451.1 432 RNSNPAVDFFDKRYIRKVLQRT 453
                     5677888999999999999996 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.2e-18   3.6e-15       1      55 [.    1073    1152 ..    1073    1165 .. 0.81
   2 !    9.8   0.0   0.00033         1      59      85 ..    1197    1223 ..    1181    1225 .] 0.87

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.2e-18
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEE.........................EBTTTTC CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaan.........................eCkivks 55  
                      GG+rfGEMErdalia+G+a lL++rl+  SD ++++vc++c+ l +                           +C++++ 
      CDO68451.1 1073 GGIRFGEMERDALIAHGTAFLLQDRLMNCSDYSTAWVCRTCGSLISLGyddvtlgemvigangslkptgpggeYCRVCRA 1152
                      9*****************************************98776656666776666666666666666666666665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00033
                      EEEEEEEHHHHHHHHHHHHTTBEEEEE CS
  RNA_pol_Rpb2_7   59 iekveipeafklLlqeLqslgialkll 85  
                      +  + +p+ f+ L+ eL s+gi+++l+
      CDO68451.1 1197 MDIIAVPYVFRYLCAELASMGIKVSLE 1223
                      556789*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 7601.04
//
Query:       CDO68452.1  [L=1017]
Description: hypothetical protein BN946_scf184760.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-46  158.2   0.0    2.2e-46  157.7   0.0    1.3  1  Nucleoporin2    Nucleoporin autopeptidase
    1.9e-15   57.5 299.9    2.9e-07   31.2  40.7   11.4 10  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Nucleoporin2  Nucleoporin autopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   2.4e-50   2.2e-46       2     144 ..     873    1017 .]     872    1017 .] 0.98

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 2.4e-50
                    TTEEEES-HHHHHTS-HHHHTSBSS-EEEETTTEEEEESS-B--GGG.-HHHHBTTTEEEETTEEEESSSC.CC.---TTSTT-S-EEEEESS-- CS
  Nucleoporin2    2 gdYytePsleeLkkmseeelsavkdFtvgrkgvGsveFlepvdlssl.dldeiagkivklekkevtVYpde.ekekppvGegLNkpaeitLenvw 94  
                    gdY+++P le+Lkk+ ++el + k++tvgr g+G+v+Flepvdl++l  l++++g+i+ +++ke+tVYpd+ +++kpp G+gLN++a+i+L ++w
    CDO68452.1  873 GDYWVKPDLETLKKLGHDELMSFKGLTVGRVGYGQVTFLEPVDLTGLpRLSSLLGEIIRFDDKECTVYPDSdDADKPPEGTGLNVKARIELLRCW 967 
                    79*********************************************99*********************94447******************** PP

                    -B-TTT--B---TT-HHHHHHHHHHHH-SSSEEEEEETTTTEEEEEES-- CS
  Nucleoporin2   95 pkdkatkeeikdkskarvkkhieklkkvegteFvsydpetgtwtfkVeHF 144 
                      dkat+e+ikd++++ v++h+++lk++++t+F+++d etg+wtf+V+HF
    CDO68452.1  968 ALDKATREPIKDRNHPAVQRHLKRLKTMKETHFEDFDMETGKWTFTVDHF 1017
                    *************************************************9 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  43.2     0.045   4.1e+02       3      91 .]       2     101 ..       1     101 [. 0.64
   2 ?   -0.3  54.6      0.22   1.9e+03       1      91 []      73     158 ..      60     186 .. 0.55
   3 !   13.4  29.6   1.2e-05      0.11      22      91 .]     236     307 ..     214     307 .. 0.59
   4 !   16.1  37.1   1.7e-06     0.015      15      91 .]     273     346 ..     272     346 .. 0.77
   5 !   23.9  49.1   6.4e-09   5.7e-05       6      91 .]     365     453 ..     348     453 .. 0.84
   6 !   31.2  40.7   3.2e-11   2.9e-07       1      91 []     403     493 ..     403     493 .. 0.83
   7 !   25.0  37.7   2.9e-09   2.6e-05      11      91 .]     455     541 ..     454     541 .. 0.88
   8 ?   -8.1  58.3         2   1.8e+04       1      91 []     498     584 ..     495     646 .. 0.61
   9 ?    0.4   0.5      0.13   1.2e+03      14      30 ..     702     718 ..     692     758 .. 0.52
  10 ?   -2.1   0.1      0.81   7.3e+03      50      63 ..     826     839 ..     805     857 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.045
  Nucleoporin_FG   3 FG.........aaatstsgglFGststt....atstgglFGasstatatasggglfgat...sqtaasgglFGstnattqttatgglFGstaata 81 
                     FG         +++++++ ++FG++s      a  +g++FG+ +++++++++  +fg+    ++t ++g+ FG+  +t++++++gglFG+++++ 
      CDO68452.1   2 FGsswanpqqnQQNQQQQPSAFGQPSGFggpsAFGSGSAFGQPQQPQQPQANP-MFGNLggtNTTGTTGSGFGAFGSTNASNTGGGLFGAPKPA- 94 
                     55555555554566677778888887776666667788888555555555544.7766666577777788888888888887788888866554. PP

  Nucleoporin_FG  82 qqttsgglFG 91 
                        t+ g FG
      CDO68452.1  95 ---TGFGAFG 101
                     ...4666665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.22
  Nucleoporin_FG   1 glFG.aaatstsgglFGststt......atstgglFGasstatatasggglfgatsqtaas....gglFGstnattqttatgglFGstaataqqt 84 
                     g+FG ++a++t+gglFG+++ +         ++++FG+++tat                 +    gg+FGst+a+++t +++glFG++ ++++ +
      CDO68452.1  73 GAFGsTNASNTGGGLFGAPKPAtgfgafGGGGSSTFGSTTTATP----------------AfgsgGGAFGSTPAAPSTGTGTGLFGAQPSASTGA 151
                     33445555566666666666664554444444445552222222................12222555555555555555555555555555445 PP

  Nucleoporin_FG  85 tsgglFG 91 
                      +gglFG
      CDO68452.1 152 FGGGLFG 158
                     5555555 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.2e-05
  Nucleoporin_FG  22 atstgglFGasstatatasggglfgat...sqtaasgglFGstnattqtta..tgglFGstaataqqttsgglFG 91 
                      + +++ FG  ++a+ ++ ++glfg++   ++t ++ g FG+t++t+q++a  + g FG++++ + +tt++glFG
      CDO68452.1 236 GSFGQTSFG--APAQPAQPSTGLFGQPaapAATGTTFGGFGNTSTTAQPAApgGFGAFGQPSTGT-NTTGTGLFG 307
                     244445566..333333333358888843333333444456666666665555555577655544.588888998 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 1.7e-06
  Nucleoporin_FG  15 FGststt....atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaataqqttsgglFG 91 
                     FG+tstt    a+ + g+FG+ st t+t+ + glfg+       +g+FG++n+++++++ + g FG++++++q+ t+gglFG
      CDO68452.1 273 FGNTSTTaqpaAPGGFGAFGQPSTGTNTTGT-GLFGG-------SGAFGQQNQQQPQQStGFGAFGQPQNQQQSGTAGGLFG 346
                     9******954444444455554444444444.6***9.......8********99998878888********99*******9 PP

  == domain 5  score: 23.9 bits;  conditional E-value: 6.4e-09
  Nucleoporin_FG   6 aatstsgglFGststt..atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqq...ttsgglFG 91 
                     +   t+gg+FG+t+t+  ++st+glFG s+++++tasg g fg+ +++a++ +lFGst++t++++++ g FG++++t+ q   ++sgglFG
      CDO68452.1 365 TGFGTTGGAFGQTQTNttQPSTSGLFG-SAQPNTTASGFGTFGT-NNNAPKPSLFGSTTTTQPSATGFGAFGAQNQTQPQqgtQPSGGLFG 453
                     444588899999999999999999999.5666666666679999.899***************999******999999889*999999**9 PP

  == domain 6  score: 31.2 bits;  conditional E-value: 3.2e-11
  Nucleoporin_FG   1 glFGaaatstsgglFGststt..atstgglFG...asstatatasggglfgatsqtaasgglFGstnattqtta..tgglFGstaataqqttsgg 88 
                     g+FG+++++++ +lFGst+tt  ++++ g+FG   ++++++ t+ +gglfg+      +gglFG+++++tq+ +   +glFGst++++ q+t+gg
      CDO68452.1 403 GTFGTNNNAPKPSLFGSTTTTqpSATGFGAFGaqnQTQPQQGTQPSGGLFGG------GGGLFGQNQQNTQQPQqpATGLFGSTQPSQ-QQTGGG 490
                     68**999**************655555668888755555555666668**99......9********99999999*******999987.799999 PP

  Nucleoporin_FG  89 lFG 91 
                     lFG
      CDO68452.1 491 LFG 493
                     **9 PP

  == domain 7  score: 25.0 bits;  conditional E-value: 2.9e-09
  Nucleoporin_FG  11 sgglFGststt....atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.......tgglFGstaataqq.ttsgglFG 91 
                     +gglFG+++++    +++++glFG s++++++++ggglfg+      +gglFG+t+++tq+++        g+lFG++++++++ ++sgglFG
      CDO68452.1 455 GGGLFGQNQQNtqqpQQPATGLFG-STQPSQQQTGGGLFGG-----GGGGLFGNTQQNTQQAQpqqtqnsFGSLFGGPKPATTAtQPSGGLFG 541
                     689*****999999999*******.566666666667***9.....8**********99999899999988999***9999998889999**9 PP

  == domain 8  score: -8.1 bits;  conditional E-value: 2
  Nucleoporin_FG   1 glFGaaatstsgglFGststt.........atstgglFG..asstatatasggglfgat............sqtaasgglFGstnattqttatgg 72 
                     glFG            +t+++         ++s g+lFG  + +t+++++sgg lfg+             ++++++gglF              
      CDO68452.1 498 GLFG------------NTQQNtqqaqpqqtQNSFGSLFGgpKPATTATQPSGG-LFGGGfgtsnttlgqpqQNQQTTGGLF-------------- 565
                     3555............5444444444333355777888865555555555555.999965444555555444455555555.............. PP

  Nucleoporin_FG  73 lFGstaataqq..ttsgglFG 91 
                       Gst  ++ q  ++++g FG
      CDO68452.1 566 --GSTLGQQPQnqQQNTGTFG 584
                     ..5443333223344444444 PP

  == domain 9  score: 0.4 bits;  conditional E-value: 0.13
  Nucleoporin_FG  14 lFGststtatstgglFG 30 
                      FGstst + +++++ G
      CDO68452.1 702 GFGSTSTPPGASSSALG 718
                     34444444333333222 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 0.81
  Nucleoporin_FG  50 qtaasgglFGstna 63 
                     q+++s++ F ++++
      CDO68452.1 826 QAKKSTNRFAAQST 839
                     22233333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.48
# Mc/sec: 6399.32
//
Query:       CDO68453.1  [L=901]
Description: hypothetical protein BN946_scf184760.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0099   15.6   4.7      0.017   14.8   4.7    1.4  1  Yae1_N    Essential protein Yae1, N terminal
  ------ inclusion threshold ------
        5.3    7.8   5.9          9    7.0   5.4    1.7  1  DUF4404   Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   4.7   1.9e-06     0.017       1      32 [.     173     204 ..     173     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-06
      Yae1_N   1 GYreGiaeGkeqglqeGfdeGyqeGaqlGlel 32 
                 G r+G++eG +qg + G++eG+  G+q Gl+ 
  CDO68453.1 173 GRRQGLEEGMAQGRIIGYEEGRAAGYQDGLAD 204
                 789**************************975 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.4     0.001         9       1      49 [.      62     117 ..      62     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
     DUF4404   1 LkelLekLheeLe....qnesldeetralLeslaedieellaeedaaaeeee...l 49 
                 Lk++L +L+++L+    + ++++++tr++L+ ++   e+ l+ e++aa ++e   l
  CDO68453.1  62 LKQTLYTLSDQLKaerqRADAAENKTREVLSHFKAATEAKLSAEQEAARANEalrL 117
                 789999999999877668899999******************99999988765541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 5597.09
//
Query:       CDO68454.1  [L=67]
Description: hypothetical protein BN946_scf184760.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.6   11.0   0.6        0.6   11.0   0.6    3.2  3  YkpC      Uncharacterized YkpC-like


Domain annotation for each model (and alignments):
>> YkpC  Uncharacterized YkpC-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6     0.072   1.3e+03       2       8 ..       1       7 [.       1       9 [. 0.77
   2 ?   11.0   0.6   3.3e-05       0.6       2       9 ..      11      18 ..      10      22 .. 0.87
   3 ?    1.8   0.8     0.033   5.9e+02       4      11 ..      37      44 ..      36      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.072
        YkpC 2 MPsSpAg 8
               MP+ p +
  CDO68454.1 1 MPPPPVQ 7
               9998755 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.3e-05
        YkpC  2 MPsSpAgp 9 
                MPsSpAg 
  CDO68454.1 11 MPSSPAGR 18
                ******95 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.033
        YkpC  4 sSpAgptk 11
                +Sp g t+
  CDO68454.1 37 PSPSGSTA 44
                8****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      109  (0.00607954); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 476.13
//
Query:       CDO68455.1  [L=292]
Description: hypothetical protein BN946_scf184760.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-16   59.1   0.2    2.6e-15   57.1   0.2    1.8  1  ABC_tran     ABC transporter
      4e-12   46.6   1.8      3e-05   24.0   0.3    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00021   20.9   0.3    0.00041   20.0   0.0    1.6  2  AAA_25       AAA domain
    0.00039   20.1   0.3     0.0012   18.6   0.1    1.9  2  AAA_29       P-loop containing region of AAA domain
      0.002   17.9   0.1     0.0028   17.4   0.1    1.1  1  AAA_15       AAA ATPase domain
     0.0027   17.6   0.0     0.0041   17.1   0.0    1.2  1  RsgA_GTPase  RsgA GTPase
     0.0031   18.1   0.2     0.0045   17.5   0.2    1.2  1  AAA_23       AAA domain
     0.0084   15.6   0.8       0.43   10.0   0.1    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.035   14.4   0.1       0.12   12.6   0.1    1.9  2  AAA_28       AAA domain
      0.041   14.0   0.1      0.076   13.1   0.1    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
       0.05   13.2   0.1      0.078   12.6   0.1    1.2  1  SRP54        SRP54-type protein, GTPase domain
      0.053   13.4   0.3       0.32   10.9   0.2    2.0  2  NACHT        NACHT domain
        0.1   12.3   0.1       0.17   11.6   0.1    1.3  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.12   11.8   0.1       0.22   11.0   0.1    1.3  1  Arf          ADP-ribosylation factor family
       0.15   12.2   0.0       0.31   11.2   0.0    1.5  1  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.2   2.2e-18   2.6e-15       1     136 [.      25     163 ..      25     164 .. 0.71

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.2e-18
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEE.EEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.teGe.illdgkdlkeqeleslrkeigvlpqepqlfpeltvren............esdeei 85 
                 l nv+++l +g+++ +vG nGaGKStLl++lag+    t G+ ++++g+d+ +    s+ + i +l  e  ++p ++                +     
  CDO68455.1  25 LTNVNIHLPKGSRTILVGANGAGKSTLLQILAGKRLIsTPGTdVRIKGRDVFR----STPEGITFLGTEWAMNPVVR--GDivvsdflnsvggY----R 113
                 689*****************************975433666438999999998....77777777777755554442..111233235433331....3 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +ka++ l l+ + d  ++ +++++S G+++rv+l++ l+ + ++lllDE t
  CDO68455.1 114 HKARRDLLLD-ILDVDLDWHMHQISDGERRRVQLVMGLMADWDVLLLDEVT 163
                 3333333322.3455556666****************************88 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.3   2.5e-08     3e-05       2      22 ..      38      58 ..      37     106 .. 0.69
   2 !   22.0   0.1     1e-07   0.00012     229     297 ..     128     194 ..     108     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.5e-08
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                ++l+G+Ng+GKS+LL++l + 
  CDO68455.1 38 TILVGANGAGKSTLLQILAGK 58
                89****************763 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1e-07
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTH 297
                 + ++ ++++SdG +r   l+  l ++    ++ll+DE+   L+  +   ll++lk+ s+ +ga ++ +TH
  CDO68455.1 128 DLDWHMHQISDGERRRVQLVMGLMADW---DVLLLDEVTVDLDVLVRNDLLQFLKKDSEtRGATILYATH 194
                 556778999****************99...9***********************7777778********* PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.5e-07   0.00041      19      54 ..      22      56 ..       5      89 .. 0.83
   2 ?   -3.1   0.1         4   4.8e+03     122     148 ..     133     159 ..     109     163 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.5e-07
      AAA_25 19 ppprrwlvkgllpagelallaGapgtGKttlaldla 54
                pp++   v  +lp+g+ ++l+Ga g+GK+tl+  la
  CDO68455.1 22 PPSLT-NVNIHLPKGSRTILVGANGAGKSTLLQILA 56
                44444.67789********************98777 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4
      AAA_25 122 ggtlltadvdaleaaieevegvrlvvi 148
                  +++ +++ ++++ ++  +++++++ +
  CDO68455.1 133 MHQISDGERRRVQLVMGLMADWDVLLL 159
                 333344444444444444455555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   9.7e-07    0.0012      17      39 ..      30      52 ..      24      59 .. 0.81
   2 ?   -2.8   0.0       4.8   5.7e+03      44      59 ..     214     229 ..     213     230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.7e-07
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                i++  kg  t+l+G++G+GKSTll
  CDO68455.1 30 IHLP-KGsRTILVGANGAGKSTLL 52
                5554.5669**************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.8
      AAA_29  44 alLvpakkvrfNkaan 59 
                 +l+ p+ +   N+aa+
  CDO68455.1 214 FLMEPTPWPFANAAAG 229
                 5777888888899986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   2.3e-06    0.0028      14      43 ..      25      55 ..      24      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.3e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileal 43
                l +v i+l +   t+l+G+N++GKS++l++l
  CDO68455.1 25 LTNVNIHLPKGsRTILVGANGAGKSTLLQIL 55
                5677788877778****************98 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.4e-06    0.0041      91     127 ..      26      63 ..       6      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.4e-06
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  ++++ +l + + ++lvG  G+GKStL+  l+++  ++t
   CDO68455.1  26 TNVNIHLPKgSRTILVGANGAGKSTLLQILAGKRLIST 63 
                  5566666555899*****************99866655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   3.8e-06    0.0045      11      39 ..      26      55 ..      24      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.8e-06
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAi 39
                 +++i++ +   t+++G NGaGK+T+l+ +
  CDO68455.1 26 TNVNIHLpKGSRTILVGANGAGKSTLLQIL 55
                5667777444569**************876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00036      0.43      24      42 ..      35      53 ..      24      56 .. 0.78
   2 ?    4.1   0.1     0.023        27     162     189 ..     157     184 ..     132     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00036
                SSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlld 42
                 s t++vG+NG+GKs ll+
  CDO68455.1 35 GSRTILVGANGAGKSTLLQ 53
                457999*********9986 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
                 EEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 162 yllDeidaaLDeknvkkvaellkekskn 189
                  llDe+   LD   ++ + ++lk++s++
  CDO68455.1 157 LLLDEVTVDLDVLVRNDLLQFLKKDSET 184
                 68*********************99875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1    0.0001      0.12       2      22 ..      38      58 ..      37      78 .. 0.81
   2 ?   -1.9   0.0       2.9   3.4e+03      86     121 ..     189     222 ..     187     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                 +++G+ ++GK+tll+ La +
  CDO68455.1 38 TILVGANGAGKSTLLQILAGK 58
                589***************943 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
      AAA_28  86 laYarayggeaeaeleaaarekrydl.vfllppapei 121
                 + Ya + +    +e+  ++++  ++l  fl++p+p+ 
  CDO68455.1 189 ILYATHIFDG-LNEFPTHVAH--MHLgTFLMEPTPWP 222
                 5566666665.5566655544..89999999998864 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.4e-05     0.076       2      26 ..      38      62 ..      37      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.4e-05
                EEEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaiv 26
                 ++vG   +GKStL++ l g++ i 
  CDO68455.1 38 TILVGANGAGKSTLLQILAGKRLIS 62
                579*****************97765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.6e-05     0.078       4      42 ..      38      78 ..      36      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
                EEEEESTTSSHHHHHHHHH..HHHHHTTS-EEEEEESTSST CS
       SRP54  4 illvGlqGaGKTttlaKLa..allkkegkkvllvaaDtfRa 42
                ++lvG +GaGK t l  La  +l+++ g++v +   D+fR 
  CDO68455.1 38 TILVGANGAGKSTLLQILAgkRLISTPGTDVRIKGRDVFRS 78
                689***************942334455************96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00027      0.32       3      21 ..      38      56 ..      36      60 .. 0.89
   2 ?    0.0   0.0      0.58   6.9e+02      86      99 ..     195     208 ..     164     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                 il G++G GK+tLlq la
  CDO68455.1 38 TILVGANGAGKSTLLQILA 56
                699*************887 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.58
                 EEE-STT-SS-TCH CS
       NACHT  86 ilDglDelvtdlgq 99 
                 i+Dgl+e++t+  +
  CDO68455.1 195 IFDGLNEFPTHVAH 208
                 99*****9997665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00015      0.17       3      27 ..      37      61 ..      35      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
   PduV-EutP  3 killiGkvgsGKttLtqalkgeelk 27
                + +l+G+ g+GK tL q l g++l+
  CDO68455.1 37 RTILVGANGAGKSTLLQILAGKRLI 61
                789*****************99885 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00018      0.22      13      42 ..      34      63 ..      25      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                TEEEEEEEESTTSSHHHHHHHHHHSSCEEC CS
         Arf 13 kelrilllGLDnaGKtTilkklkleelvtt 42
                k  r +l+G  +aGK+T+l+ l  ++l +t
  CDO68455.1 34 KGSRTILVGANGAGKSTLLQILAGKRLIST 63
                67899*****************99998765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00026      0.31       3      22 ..      39      58 ..      38      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
      AAA_33  3 llvGlpGsGKstlaerllkk 22
                +lvG++G+GKstl++ l+ k
  CDO68455.1 39 ILVGANGAGKSTLLQILAGK 58
                89***********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2115.49
//
Query:       CDO68456.1  [L=673]
Description: hypothetical protein BN946_scf184760.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-06   27.3  15.5    5.1e-06   26.7  15.5    1.3  1  Opy2      Opy2 protein
     0.0053   15.7   4.9     0.0094   14.9   4.9    1.3  1  VSP       Giardia variant-specific surface protein
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.051   13.6   0.0    1.5  1  OppC_N    N-terminal TM domain of oligopeptide transport perm
      0.053   12.9   6.0       0.13   11.7   6.0    1.7  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7  15.5   1.1e-09   5.1e-06       1      35 []      23      56 ..      23      56 .. 0.99

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.1e-09
        Opy2  1 CVsCpdsapsCPsCpsgeeCvltaqtCtsCaktyC 35
                C  C+d++p+C +Cp ++eC+++ ++C++C++ +C
  CDO68456.1 23 CLICDDTPPQC-NCPWNQECIIINRDCHTCPSSQC 56
                99*********.*********************** PP

>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   4.9   2.1e-06    0.0094     315     390 ..      21      98 ..      14     102 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-06
         VSP 315 tkevactssesdkgvtGvkdclscappssdkGsvlcylikdsgs..tnksGlstGaiaGisvavvvvvgGlvGflcww 390
                  ++  c+++  + +    ++c+          s  c    d+gs  + k G+s Ga+aG  v ++v+++  vG   w+
  CDO68456.1  21 NGCLICDDTPPQCNCPWNQECIIINRDCHTCPSSQCVANTDTGSskVAKGGVSKGAVAGAVVVAIVLLAAAVGAYFWY 98 
                 566666666666666666778877777788888999999999952368*************************99886 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05     0.051      14      42 ..      74     102 ..      73     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
      OppC_N  14 klAvvglvilllllliaifaPliaPydp.q 42 
                 k Av+g v+++++ll+a+++ +++ y   q
  CDO68456.1  74 KGAVAGAVVVAIVLLAAAVGAYFW-YRRrQ 102
                 89********************95.44352 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.0   2.9e-05      0.13       8      38 .]      73     101 ..      68     102 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
        SKG6   8 ntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 ++ a+a aV+V ++  +++++a  +f++RR+
  CDO68456.1  73 SKGAVAGAVVVAIVLLAAAVGA--YFWYRRR 101
                 5678999999877777777666..6778875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 4204.03
//
Query:       CDO68457.1  [L=204]
Description: hypothetical protein BN946_scf184760.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   27.1   3.7    3.9e-06   26.2   3.7    1.5  1  SKG6       Transmembrane alpha-helix domain
     0.0075   16.6   6.1      0.011   16.0   6.1    1.2  1  Opy2       Opy2 protein
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.015   15.1   0.0    1.2  1  DUF4448    Protein of unknown function (DUF4448)
       0.05   12.3   0.2      0.059   12.1   0.2    1.1  1  Herpes_gE  Alphaherpesvirus glycoprotein E


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   3.7   8.8e-10   3.9e-06       8      38 .]      89     119 ..      83     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 8.8e-10
        SKG6   8 ntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 ++ aIa+aV+VPV V++++ +ai ++ + R+
  CDO68457.1  89 SKGAIAAAVVVPVLVVLAAAAAIALLLYSRR 119
                 568**************99999988888875 PP

>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.1   2.5e-06     0.011       1      25 [.      23      46 ..      23      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.5e-06
        Opy2  1 CVsCpdsapsCPsCpsgeeCvltaq 25
                C  C+d +p C +C+ +e+Cv+t++
  CDO68457.1 23 CAICNDAPPDC-NCAWNEQCVVTVR 46
                999********.**********987 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.3e-06     0.015     145     186 ..      80     121 ..       9     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.3e-06
     DUF4448 145 edkeseegkkaekyalaialPvvvvvlvlgligfvlwnrkkr 186
                  + ++ +g ++  +a a+++Pv vv+++++ i+++l++r++r
  CDO68457.1  80 VQSHHRKGLSKGAIAAAVVVPVLVVLAAAAAIALLLYSRRRR 121
                 3455666777778999***********************877 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.3e-05     0.059     317     382 ..      60     129 ..      32     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
                 --XXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 317 hlPqr....dedeaestkskeiappnngtsraalllaavliaalllvllglsalvcltkrrrrkkrrvks 382
                 h+P+r    ++   +s  +++   +  g s++a+ +a v+  +++l++   +al    +rrr ++r+  +
  CDO68457.1  60 HVPPRgvlpNPALEPSGAASVQSHHRKGLSKGAIAAAVVVPVLVVLAAAAAIALLLYSRRRRLQARAAAE 129
                 6666656554444455556667777788899999999999999999999999999999999999998632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1464.03
//
Query:       CDO68458.1  [L=663]
Description: hypothetical protein BN946_scf184760.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.51   10.5  32.9          2    8.6   9.5    4.5  4  zf-CCHC         Zinc knuckle
        1.6    8.8  19.6        0.7    9.9   4.1    3.9  3  zf-CCHC_3       Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.3    0.0067        60       2      10 ..     338     346 ..     337     354 .. 0.82
   2 ?    7.0   0.1   0.00076       6.8      10      18 .]     358     366 ..     357     366 .. 0.90
   3 ?    4.4   2.1    0.0049        44       3      17 ..     381     395 ..     379     396 .. 0.93
   4 ?    8.6   9.5   0.00022         2       3      16 ..     438     451 ..     438     453 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0067
                 CTSSSSSSS CS
     zf-CCHC   2 kCynCGepG 10 
                 +C nCG +G
  CDO68458.1 338 VCKNCGAEG 346
                 6******99 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00076
                 SSTTTTSTS CS
     zf-CCHC  10 GHiardCpk 18 
                 GHi rdCp+
  CDO68458.1 358 GHINRDCPN 366
                 ********6 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0049
                 TSSSSSSSSTTTTST CS
     zf-CCHC   3 CynCGepGHiardCp 17 
                 C +CG   H+ ++Cp
  CDO68458.1 381 CNRCGARTHQTNECP 395
                 **************9 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00022
                 TSSSSSSSSTTTTS CS
     zf-CCHC   3 CynCGepGHiardC 16 
                 CynCG+ GH+  dC
  CDO68458.1 438 CYNCGGCGHLGDDC 451
                 ************** PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.1   7.8e-05       0.7       5      22 ..     337     355 ..     333     377 .. 0.77
   2 ?    5.4   1.7     0.002        18       7      21 ..     381     395 ..     375     414 .. 0.84
   3 ?    1.7   0.5      0.03   2.7e+02       6      20 ..     437     451 ..     434     461 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.8e-05
   zf-CCHC_3   5 aaCQkClkkG.HwtYECkn 22 
                  +C++C+ +G H tYEC+ 
  CDO68458.1 337 FVCKNCGAEGeHKTYECPV 355
                 58*****997699****85 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.002
   zf-CCHC_3   7 CQkClkkGHwtYECk 21 
                 C +C+ + H t EC+
  CDO68458.1 381 CNRCGARTHQTNECP 395
                 **************9 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.03
   zf-CCHC_3   6 aCQkClkkGHwtYEC 20 
                  C +C++ GH+   C
  CDO68458.1 437 WCYNCGGCGHLGDDC 451
                 599*******96666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2075  (0.115734); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                       173  (0.00964917); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.51
# Mc/sec: 3925.00
//
Query:       CDO68459.1  [L=243]
Description: hypothetical protein BN946_scf184760.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1848.88
//
Query:       CDO68460.1  [L=813]
Description: hypothetical protein BN946_scf184760.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   41.2   0.1    2.7e-10   40.0   0.1    1.6  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   1.5e-14   2.7e-10       4      76 ..     602     682 ..     599     706 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1.5e-14
                 HHHHHHHHSTTTTEEEEEEE...TTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESS.....T-SCTTBE CS
      UQ_con   4 kelkelakkkpsgisaklvd...denlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvt.....kifHPnvd 76 
                 kel+ l+++ p   ++++     +++++ +k+li+gpe+tpY++g+F +++ + ++Y  +pP+vk++t       f+Pn++
  CDO68460.1 602 KELAVLTTNLPVAWNSSIFLrvdETRVDVIKALITGPEGTPYHNGCFLFDVFLGPNYNQSPPSVKYMTtnggkYRFNPNLY 682
                 55554444444444444433222589*****************************************99999899****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6019.16
//
Query:       CDO68461.1  [L=342]
Description: hypothetical protein BN946_scf184760.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-46  155.3   0.7    2.5e-17   62.6   0.1    3.2  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     2e-12   3.5e-08      21      94 ..      18     115 ..      16     118 .. 0.87
   2 !   56.4   0.0   1.1e-19     2e-15       3      96 ..     124     227 ..     122     228 .. 0.85
   3 !   62.6   0.1   1.4e-21   2.5e-17       6      93 ..     247     336 ..     243     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2e-12
                 HHHHHHHHHHHHHHHCCCSSTTTSCSS........................HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  21 lvttPldvvKtrlqtqkksskksksaa........................ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +v++Pl ++ tr  ++ k+++k +  a                        + +++  i+k eG+ gly+Gl+ +ll++a++++++  +ye ++ +ll
  CDO68461.1  18 TVANPLIFLSTRAAVETKKEHKVRACAvipgraslpltndvhsldpierqtTYEAVLDIIKREGVVGLYSGLNSSLLGIAVTNGVYYYFYERTRGILL 115
                 788999999999999888877766555888888888899999999999999*****************************************998876 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 1.1e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........CCCSSTTTSCSS..........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqt...........qkksskksksaa..........ildvlkkiykeeGlrglyrGllpnllrvapasa 80 
                 ls+l+++laG++ag+++t++ +P++vv t   +           +          +          il++++ i++++G+++++rGl+p+l+ v+ +  
  CDO68461.1 124 LSTLESMLAGLIAGSATTILSNPIWVVQTTQAVytmnqptptsvD----------GqrreqparpgILKTIQYILRKDGITAFWRGLGPALVLVI-NPI 211
                 678999***********************9999666655444432..........03445556667***************************99.*** PP

                 HHHHHHHHHHHHHCTT CS
   Mito_carr  81 lkfvlyetlkrlllkk 96 
                 ++ +++e+lk++l k+
  CDO68461.1 212 IQYTVFEQLKNFLIKS 227
                 ************9986 PP

  == domain 3  score: 62.6 bits;  conditional E-value: 1.4e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHH....HHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfv....lyetlkrll 93 
                 + +++ G+l++++at+ t+P  vvK rlq+ + +++  ks  +ld + +i+keeG+ gly+G++ +l +++ ++a+ f+    +ye++k+ l
  CDO68461.1 247 WDYFFLGALSKLIATSSTYPYIVVKNRLQAGQAHAQRYKS--ALDGILTILKEEGVEGLYKGVGSKLAQSVLTAAILFAgqkrIYEMTKKAL 336
                 7789**************************9999988666..9************************************8888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2515.11
//
Query:       CDO68462.1  [L=317]
Description: hypothetical protein BN946_scf184760.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2382.09
//
Query:       CDO68463.1  [L=852]
Description: hypothetical protein BN946_scf184760.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2089  (0.116515); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 5477.69
//
Query:       CDO68464.1  [L=96]
Description: hypothetical protein BN946_scf184760.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 668.36
//
Query:       CDO68465.1  [L=268]
Description: hypothetical protein BN946_scf184919.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-23   80.5   0.0    1.1e-22   80.1   0.0    1.1  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
       0.28    9.8   1.9       0.35    9.5   1.9    1.1  1  Med15            ARC105 or Med15 subunit of Mediator complex 


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.3e-26   1.1e-22       1     107 [.     135     241 ..     135     243 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.3e-26
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w+k +a ++ lI+++i dsl+ +++ + ta+ +W++L++++e ks++  + lr++l + k++++++v+ h++k++ + ++L+a+g+  +d+d  
       CDO68465.1 135 WRKGEANVKQLIASTIPDSLFMKIRAKPTARVIWEALAQEFECKSRMVSVDLRRRLQEQKCSDKDDVRVHFAKMRAMREDLAAMGQSPSDDDFF 228
                      8999****************************************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyet 107
                      ++++ s+P+sye 
       CDO68465.1 229 AIIMGSMPSSYEP 241
                      ***********95 PP

>> Med15  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.9   3.9e-05      0.35     101     277 ..      48     220 ..      34     231 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 3.9e-05
       Med15 101 apvgvgpgapsgaqmggpgtasnllaslsraqmava.gagfpsqdsrvarmqqggqaagvmqqsiqqqqsttpnqmganqgsaqgqavgknqgqqapvg 198
                 a  ++ p+a+ +++   +gta+        + +a + ++++  +  ++++++ g+++ag+  +  +++++ +  ++ a+  +   q+  +   ++   g
  CDO68465.1  48 AREPIAPQATAAQAVTAAGTAA--------PGAAAGpTMAGGDAGAAAGGTGSGAGTAGPVGGAAGAGGTLEAAAPAAGVTPDPTQVAYEADLAEWRKG 138
                 5556777777777777777777........444444444446666777777777777777777777777777777766666666666666666666666 PP

       Med15 199 sqqPsqmgapiml...gyagngqmqgpngqgggaggnnqqnplvqtrlqaqlqnqqkqqldqvrgpadaqaqmqqqaqanag 277
                 + + +q++a++ +     +   ++  +   +  a+  + +  +v   l+ +lq q+  + d vr++      m +   a ++
  CDO68465.1 139 EANVKQLIASTIPdslFMKIRAKPTARVIWEALAQEFECKSRMVSVDLRRRLQEQKCSDKDDVRVHFAKMRAMREDLAAMGQ 220
                 6666666666666222112222222223334445555556666666666666777666666666666666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1899.81
//
Query:       CDO68466.1  [L=81]
Description: hypothetical protein BN946_scf184919.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-20   72.2   1.2    3.5e-20   71.7   0.4    1.6  2  Tfb5      Transcription factor TFIIH complex subunit Tfb5
  ------ inclusion threshold ------
      0.096   13.1   0.0       0.11   12.9   0.0    1.1  1  DUF2554   Protein of unknown function (DUF2554)


Domain annotation for each model (and alignments):
>> Tfb5  Transcription factor TFIIH complex subunit Tfb5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.4   3.9e-24   3.5e-20       2      60 ..       1      56 [.       1      60 [. 0.96
   2 ?   -1.4   0.0      0.26   2.3e+03      59      67 ..      72      80 ..      68      81 .] 0.77

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.9e-24
        Tfb5  2 vkaikGvLveCDpaikqlilkldeqepsqkfiiedLDethlfvkeevveelkkeleell 60
                +kai+GvL++CD a+kq++l l+e+    +fiiedLD+ hl++k+++   +++ele+++
  CDO68466.1  1 MKAIRGVLLTCDSAVKQILLALNEKD---NFIIEDLDDHHLVIKADQEYRVRRELEAEV 56
                59***********************8...**************************9875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.26
        Tfb5 59 llekntyep 67
                 leknty+ 
  CDO68466.1 72 QLEKNTYSL 80
                589999986 PP

>> DUF2554  Protein of unknown function (DUF2554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.11       4      53 ..       2      51 ..       1      60 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
     DUF2554  4 kalsvvlltcalfsGq.llakqkdhefvwvktvdhqlrheadsdelravae 53
                ka+  vlltc     q lla ++  +f+     dh l  +ad  e r   e
  CDO68466.1  2 KAIRGVLLTCDSAVKQiLLALNEKDNFIIEDLDDHHLVIKADQ-EYRVRRE 51
                88899*****9887773679999999***************96.5565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 578.73
//
Query:       CDO68467.1  [L=516]
Description: hypothetical protein BN946_scf184754.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-14   52.9 107.5      1e-06   29.5  25.9    4.5  3  Nucleoporin_FG  Nucleoporin FG repeat region
  ------ inclusion threshold ------
      0.022   14.2   0.1      0.034   13.6   0.1    1.2  1  G3P_antiterm    Glycerol-3-phosphate responsive antiterminato


Domain annotation for each model (and alignments):
>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5  25.9   1.1e-10     1e-06      26      91 .]       4      66 ..       2      66 .. 0.88
   2 ?   -1.4  75.2       0.5   4.5e+03       1      91 []      63     190 ..      50     198 .. 0.80
   3 !   16.8  21.8     1e-06    0.0093       9      74 ..     166     240 ..     163     254 .. 0.50

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.1e-10
  Nucleoporin_FG 26 gglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91
                    ++lFG  + + a ++g++lfg++++++++++lFGst++++q++a+++ FG+  +t+++t++++lFG
      CDO68467.1  4 NSLFG--A-KPAGQTGSSLFGQSTTQPQGSSLFGSTQQQPQQQAGTSTFGGFGQTQNATQGSSLFG 66
                    689**..3.444455556************************99************99*******9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.5
  Nucleoporin_FG   1 glFG........aaatstsgglFGststt...atstgglFG.......asstatatasggglfgat...........sqtaasgglFGstnattq 66 
                     +lFG        +++++++++lFGst  +   ++++++lFG       ++++++++++g++lfg++           + +++++glFG+++ ++q
      CDO68467.1  63 SLFGstlgqnnqQQQPQQGSSLFGSTLGQnnqQQQGSSLFGstlgqntQQQQQQQPQQGSSLFGNPfgqpqqqqqqqQGQQSGTGLFGQPAGQQQ 157
                     57777777888778888888999887666666899999999999998555555555566699999999888876655555566999999999998 PP

  Nucleoporin_FG  67 tta.......tgglFGstaataqq.ttsgglFG 91 
                     +++       tg+lFGs+++++q  ++++g FG
      CDO68467.1 158 QQQkpmfgasTGSLFGSNTQNQQGqQQQQGAFG 190
                     888899999999999999888877788888998 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1e-06
  Nucleoporin_FG   9 stsgglFGststt...atstgglFG...asstatatasgg.glfgat..sqtaasgglFGstnattqttatgglF 74 
                     +++g+lFGs++++   +++++g+FG   +++++ +++++  +lfg++   +++ +++l G ++a++ ++ ++ +F
      CDO68467.1 166 ASTGSLFGSNTQNqqgQQQQQGAFGgfgSNASSLQPQATHpSLFGNStmGTQQVGSSLWGRPPAQQHQQPQAPMF 240
                     445555555555555544444444444333333333333335555555555555555555555555554455555 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.8e-06     0.034       4      70 ..     283     349 ..     282     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-06
                   EESSSSSGCC-...-SSEEEE--EETTTHHHHHHHHHHTT-EEEEEGGGEET--SSHHHHHHHHH.T CS
  G3P_antiterm   4 avkdeedlekalesevevvfllegdilnlkeiveklkkagkkvfvhiDlieGlskdeaaveflkkei 70 
                   a+k +e+++++ ++ + ++ ll++d+ + k++ +k+++  + ++v + ++eG+ + ++  ++lk+++
    CDO68467.1 283 ALKGQEEIRNVHKELTAAISLLTSDMQHTKDLKHKVEQTVQDTIVATRIVEGFRNPQQHGQYLKTYA 349
                   88999**********************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1409  (0.0785878); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 3214.27
//
Query:       CDO68468.1  [L=361]
Description: Glycosyltransferase Family 17 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-137  458.8   0.0   1.2e-137  458.7   0.0    1.0  1  Glyco_transf_17  Glycosyltransferase family 17


Domain annotation for each model (and alignments):
>> Glyco_transf_17  Glycosyltransferase family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.7   0.0  6.7e-142  1.2e-137      10     349 .]      13     360 ..       4     360 .. 0.91

  Alignments for each domain:
  == domain 1  score: 458.7 bits;  conditional E-value: 6.7e-142
  Glyco_transf_17  10 lllvlvlllvlliv.....llaqkisyllrPlWdkppkpfeeiphYyaenvsa.eelCklhgWkkreeprrvfDavlfsneldlleirlkelap 97 
                      l+++l+l + +++        ++ isy++rPlWdkp  p +++ hYyae+v+  ++lC+lhgW  r  + +v+Davlfs+eldl eirl+elap
       CDO68468.1  13 LTFALILAVCYTVAssislRIRNFISYSTRPLWDKPLGPHTTLSHYYAEGVAFdAHLCNLHGWAPRAAQPEVWDAVLFSSELDLFEIRLNELAP 106
                      3333332222222233444667789**************************862689************************************* PP

  Glyco_transf_17  98 vvdkfvilesnstftGlpkelvfaenkerfkfaeskivyetisgrakkkgedpfkeeaeqrvaldellraagieedd....llimsDvDeipsa 187
                      vv+kf+++e+++tftG pk+l+fa + +rf+ + +kiv+++++gr++++ge+pf++ea+qr +++ llra+  + d     l+i+sDvDeipsa
       CDO68468.1 107 VVSKFFVVEADRTFTGRPKNLTFAAHADRFAAFADKIVHSVFHGRTLQPGESPFVNEAAQRGHMNDLLRAHVAAADPaqppLVIFSDVDEIPSA 200
                      *********************************************************************443332223466************* PP

  Glyco_transf_17 188 htielLkaCdgipevlhLelrnylYsfeflvdeksWrasvhkyeegktkYrhsrqsdliladaGwhcsfCfrkisefvfkmkayshaDrvrrke 281
                      hti+lL+aCd +p+++hL++r+ylYsfe+++ e sWra+vh+  ++ + Y+h ++++  lad+GwhcsfCfr ++ef+ km +yshaDrv  ++
       CDO68468.1 201 HTIRLLQACD-APSPIHLQMREYLYSFEWPAGEGSWRAQVHRLGADGSGYNHGQVAEWKLADSGWHCSFCFRYLHEFADKMSGYSHADRVTDQS 293
                      **********.*********************************************************************************** PP

  Glyco_transf_17 282 llkpkriqkviCkGkdlfdmlPeeytfkelikklgkiprsasavhlPsyllenaekfkfLLPGgClre 349
                      ll+p+riq+viC+Gkd+f mlPe+y +k+l++ + k + + savh+P++l+e++e+f+fLLPGgC+re
       CDO68468.1 294 LLRPERIQQVICEGKDIFGMLPEAYRWKDLLSLMDKDA-TPSAVHVPRHLIEHSERFRFLLPGGCVRE 360
                      ********************************999987.67*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2616.83
//
Query:       CDO68469.1  [L=317]
Description: hypothetical protein BN946_scf184754.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-26   92.9   0.0    1.7e-21   76.3   0.0    2.1  2  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.5e-07    0.0098       6      30 ..      53      77 ..      49      84 .. 0.90
   2 !   76.3   0.0   9.6e-26   1.7e-21      78     249 ..     112     275 ..     107     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.5e-07
       Actin  6 avVlDnGssttraGyagedaPkavi 30
                 ++lD+Gs++ ++G++ge +P+ v+
  CDO68469.1 53 RIILDPGSRIWKVGFSGEGKPRDVF 77
                69*******************9886 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 9.6e-26
       Actin  78 elwehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgG 176
                 + ++  +++ l +dp++ +++l+e pl p + +e ++ ++f++++vp++++a+s  l++ a+g+ tglv+D+G+ +t+v pV+   +L  ++r+ +l+G
  CDO68469.1 112 ACLRSLFHNSLLTDPKSRKVILVEHPLLPIHIKEIIARVLFNNLQVPSISFASSHLLALLAAGRVTGLVLDCGHLETTVLPVYSFRPLYPHLRTTPLAG 210
                 5678889999***************************************************************************************** PP

       Actin 177 kaLteqlkellssknvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg 249
                   L+ ++k+ll +    + p  ++    ++          +++  +  + l + +v++eiK ++c+v + +  
  CDO68469.1 211 ARLSTHIKALLLMFGTYIPPATSLSAAVNIP--------AASRSVRVPQDLLTDKVIDEIKTRLCFVGDPIDD 275
                 *************888888877766554442........2222223334556789************887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2402.64
//
Query:       CDO68470.1  [L=96]
Description: hypothetical protein BN946_scf184754.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.46
# Mc/sec: 623.68
//
Query:       CDO68471.1  [L=995]
Description: hypothetical protein BN946_scf184754.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-23   82.8   1.9    3.9e-23   81.8   0.0    2.4  4  Transposase_21  Transposase family tnp2
      4e-06   26.4   0.2    1.6e-05   24.5   0.0    2.0  2  DUF4218         Domain of unknown function (DUF4218)
  ------ inclusion threshold ------
      0.099   12.8   0.4       0.25   11.5   0.4    1.6  1  Ribonuc_2-5A    Ribonuclease 2-5A


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.27   1.6e+03     144     207 ..     272     334 ..     260     338 .. 0.73
   2 !   81.8   0.0   6.5e-27   3.9e-23      22     152 ..     357     484 ..     351     501 .. 0.89
   3 ?   -4.4   0.0       1.5   9.1e+03     170     185 ..     529     544 ..     525     551 .. 0.78
   4 ?   -2.9   0.0      0.55   3.3e+03      84     108 ..     577     601 ..     570     609 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.27
  Transposase_21 144 gklacvtCkknteslrlkngkklcylghrrfleanhrlrrkkksfdgkaee.reaPkklsgeeil 207
                     ++ +c+ C++  + +  +  + ++yl     l+a+ + r + ++++ +a+  + +P   + ++++
      CDO68471.1 272 QEASCPFCQEPRRDTLGRARQHFVYLPIIPRLKAQYANRDMANKLQYRAKDhHYEP--GTIKDVM 334
                     56789***999888888888999999999999999999999888886654303334..3445555 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 6.5e-27
  Transposase_21  22 efaedprnvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkee 116
                     ++ +dpr+  +gl+tdGf Pf++ s   + Wp++l++ynlPP +  + +n++   +ipGpk+P  d+d +l Pl +++++l   Gv++yd+l++e
      CDO68471.1 357 RYLQDPRDAAFGLSTDGFAPFKRRS--KTAWPLILVNYNLPPEVRTHLDNLMGLGVIPGPKKP-IDFDSFLWPLAQEFLRLAV-GVHAYDSLTDE 447
                     5779******************765..679************9999999999888********.69***************98.*********** PP

  Transposase_21 117 kfnlravllwtindfPalstlsGlst.kgklacvtCk 152
                     +f lra l+    d Pa+s++  ++  +g   c +C+
      CDO68471.1 448 FFALRAYLILVFGDIPAISMVMRMKGhNGACPCRMCS 484
                     *******************987665414556666775 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 1.5
  Transposase_21 170 ghrrfleanhrlrrkk 185
                     +h++fl++ h++++ +
      CDO68471.1 529 THEQFLQQAHEVQFAR 544
                     6999999999987754 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.55
  Transposase_21  84 PgkdidvylePlvddlkelweeGve 108
                     P   +++  e +v++l++lw    +
      CDO68471.1 577 PYDFMHLIWENVVKNLMNLWTGQYK 601
                     55568888999*********86555 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.32   1.9e+03      50      97 ..     660     708 ..     658     724 .. 0.72
   2 !   24.5   0.0   2.7e-09   1.6e-05      38      91 ..     732     784 ..     725     801 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.32
     DUF4218  50 laGPvhyrnmypveRkllvlkkyvrn.karpeGsiaEayvaeealtfcs 97 
                  +GPv +++ +   R+     + v+  + +++  i+ a+vae  ++++ 
  CDO68471.1 660 YVGPVLLERRFKHRRYYDHFVQLVKViRQCLQFEITHAEVAEIRTNLVQ 708
                 5799999999999999887777776425566666777777766555555 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 2.7e-09
     DUF4218  38 vHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsiaEayvaee 91 
                  H  +H++d ++ +GPv + + +p+eR+   l+  +r +  p  si   yv++ 
  CDO68471.1 732 IHALLHIADSIIKTGPVWATWAFPMERYCGALQPAIRSRRFPYASIN-RYVVDH 784
                 6999***********************************99999985.455554 PP

>> Ribonuc_2-5A  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   4.1e-05      0.25      35     114 ..     653     737 ..     643     744 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.1e-05
  Ribonuc_2-5A  35 vksdWtkkldkelvdslgkyrkYkgdsvrdLLRaiRNkke....H..yeelpedvkeilgelpegflsYftkrFPkLlievyevvk 114
                   ++s Wt+ + + l+++  k+r+Y+ d+  +L+++iR   +    H    e+++++ + + +++e +++Y  +r P+ l++++++++
    CDO68471.1 653 TRSFWTQYVGPVLLERRFKHRRYY-DHFVQLVKVIRQCLQfeitHaeVAEIRTNLVQWVLKYEELYYQYEPERLPTCLLTIHALLH 737
                   4568******************98.78889******97653333633569999999999999***************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 7310.34
//
Query:       CDO68472.1  [L=734]
Description: hypothetical protein BN946_scf184754.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.004   17.1   0.0      0.017   15.1   0.0    2.0  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.6e-07     0.017      32     100 ..      80     192 ..      56     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.6e-07
                 SSEEEEEEEHHHHHHHHHHHHHHHT...............................................TSTSTSSSTSGSSSSSCTTSHHHHHHH CS
          PX  32 akewtvkRrYsdFeeLhskLlrkfp...............................................rvkiPplPkkvlfgsvrkkdeefiekr 83 
                  +e +v+Rr +d  ++++ L+ ++                                                + ++P l+kk ++ +    +++ ie+r
  CDO68472.1  80 FSEYEVWRRWEDCLWFQEILETEYAlmarqkrarlaagkgvkkngvyvhsdqaasfeslppgpdvnmiakdiHDIVPRLTKKGTLFR---ASQATIEQR 175
                 36999****************************999999999999999999988877777777777777777777777777777766...9******** PP

                 HHHHHHHHHHHHTSCHH CS
          PX  84 rkgLeeyLqrllnhpel 100
                  +++e+ ++ l+++ + 
  CDO68472.1 176 GREFEALINTLFHDDVP 192
                 ************98643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5490.47
//
Query:       CDO68473.1  [L=348]
Description: hypothetical protein BN946_scf184754.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-66  223.6   0.0    3.6e-66  223.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.034   14.2   0.1        0.2   11.7   0.0    2.1  2  GIIM          Group II intron, maturase-specific domain


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0     4e-70   3.6e-66       4     293 ..      18     324 ..      16     325 .. 0.95

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 4e-70
                   EE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   4 lGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskeniresleeslkrLg 98 
                   lG+w   ++  ++ + + +++++a ++Gin+fD+Ae+Y  gqse+++G+++k+ +++r ++i++tK+  + r +++ sgls+++i+e  +esl rL+
    CDO68473.1  18 LGGWLTLGG-SVKGDPVKDIIKTAWDNGINLFDCAESYAAGQSEIEIGRVIKELGFRRSDLIVTTKIfwGTREGPNASGLSRKHIIEGTKESLARLQ 113
                   577755553.8999999***************************************************9**************************** PP

                   -S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBS CS
  Aldo_ket_red  99 tdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.releeegllelckkkgvpliays 190
                    dyvD+++ Hr d+++p +eev++a++ ++++G++ ++G+S++s++ +e+a    +k   + ++a q e+++l r+++e+++++l++++++ + ++s
    CDO68473.1 114 MDYVDVIFAHRADHTVP-MEEVVRAFNFVIEQGWAFYWGTSEWSAQEIEEAhhvaSKLHLIAPIAEQCEHHMLkRDRAEREYSPLYRNYNISTAVFS 209
                   *****************.**********************************9998888999*********************************** PP

                   TTGGGTTGTTTSS---SSSCCC-------.........TS-HHHHHHHHHHHHHHHH.TT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG CS
  Aldo_ket_red 191 plggGlltgkyqseedkedkeprkdlkrd.........ertsknldaaeelselake.hgvslaqlalryalsqpavgivipgasnieqlednldal 277
                   +l+gG+ltgky++  + ++  + ++ +++          + +k+ +++++l e+a++  g+++++lal+++  +p+++++i+gas++eq++dnl+al
    CDO68473.1 210 ALAGGFLTGKYNDGIPEGSRLAVEQEEQFkkkaewlqsPEGKKQVEKIRKLTEFAEKeVGCKISHLALAWVARNPNTSTIILGASRPEQITDNLKAL 306
                   **************999998888777666888*****9999***************999************************************** PP

                   G-..---HHHHHHHHHHH CS
  Aldo_ket_red 278 el..klseeevaeldell 293
                   e+  kl++ +++++de+l
    CDO68473.1 307 EVipKLTPVVLDKIDEIL 324
                   8779***********997 PP

>> GIIM  Group II intron, maturase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05       0.2      14      59 ..     124     170 ..     121     193 .. 0.83
   2 ?   -0.9   0.0      0.19   1.7e+03      10      30 ..     243     262 ..     238     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
        GIIM  14 rsskgvsleelirklnpil.rGWanYyrlg.vakrvfskldhyirrrL 59 
                 r+  +v++ee++r +n ++ +GWa Y+++   +++ +++  h++ ++L
  CDO68473.1 124 RADHTVPMEEVVRAFNFVIeQGWAFYWGTSeWSAQEIEEA-HHVASKL 170
                 56678***********99956********96666666666.7777666 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
        GIIM  10 eltkrsskgvsleelirklnp 30 
                 e++ +s  g+++ e+irkl  
  CDO68473.1 243 EWL-QSPEGKKQVEKIRKLTE 262
                 677.66688999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2344.16
//
Query:       CDO68474.1  [L=610]
Description: hypothetical protein BN946_scf184754.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-15   54.7   3.8    5.3e-15   54.7   3.8    1.8  2  GATA      GATA zinc finger


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2      0.56     1e+04       8      19 ..      54      67 ..      53      68 .. 0.72
   2 !   54.7   3.8     3e-19   5.3e-15       1      34 [.     437     470 ..     437     472 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.56
        GATA  8 kTplWRrg..pdgn 19
                +T+ W r   p+g+
  CDO68474.1 54 ETTSWSRSnaPSGP 67
                68889777678887 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 3e-19
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkg 34 
                 C++C+ ++Tp+WRrgpdg+++LCnaCGl+y+k  
  CDO68474.1 437 CHSCNIRETPEWRRGPDGARTLCNACGLHYAKLM 470
                 *******************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.38s 00:00:01.28 Elapsed: 00:00:00.61
# Mc/sec: 2997.89
//
Query:       CDO68475.1  [L=392]
Description: hypothetical protein BN946_scf184754.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-54  185.8   1.7    2.7e-54  184.8   1.7    1.5  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   1.7   1.5e-58   2.7e-54       2     268 .]      87     344 ..      86     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 1.5e-58
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevldvssvyesadian...layt 95 
                 v++ltp++g+e  g+dl++   l+d++k+el  l+ae+gvv+fr+++++  qql++ar fGpl+++  ++  ++ +++  v  vy+++++++      +
  CDO68475.1  87 VQHLTPAIGTEisGIDLRQ---LTDQQKDELALLVAERGVVFFRDQEIDIHQQLDLARHFGPLHKHA-TTPVPREPGLEEVHVVYNDGSRRPdpsAFSK 181
                 789********88888888...99999**********************************999999.7777777777776666666666663323333 PP

        TauD  96 tll.wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgr 193
                     wH+D sy+ +pp+++ L  ++ p+ GG+t++++g        +  ++ legltav++   + +  +      + +++  +t hpvvr+hpv tg+
  CDO68475.1 182 L-ElWHSDVSYELQPPSTTSLKVITGPPYGGDTLWSSG--------PGFQKYLEGLTAVHSAVAQAD--GARAAGHTVRREPVETVHPVVRVHPV-TGW 268
                 3.36*********************************9........7799****************9..9999999999***************8.*** PP

        TauD 194 kallvnppfatrieglgtpeskelldaleelled.peftyrfqwqeGdlvifdNrrvlHgrt.afdegeeRhllrcy 268
                 k+++vnp f++ri+g++++es+++l++l++ +++ p+f++rf+wq+++++i+dNr v H++t +f ++  Rh lr++
  CDO68475.1 269 KSIYVNPGFTRRIVGVPKAESDAILELLFRQIAEnPDFQVRFRWQPNSIAIWDNRVVTHSATfDFWPH-TRHALRAT 344
                 **************************9987777748*****************************999.9*999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2594.06
//
Query:       CDO68476.1  [L=63]
Description: hypothetical protein BN946_scf184499.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      109  (0.00607954); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 459.05
//
Query:       CDO68477.1  [L=528]
Description: hypothetical protein BN946_scf184499.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-42  144.9   0.0      4e-42  144.5   0.0    1.1  1  UCH            Ubiquitin carboxyl-terminal hydrolase
    9.5e-22   78.0   0.0    1.1e-21   77.8   0.0    1.1  1  UCH_1          Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.012   15.0   1.7       0.18   11.3   0.8    2.3  2  Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopep


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.0   6.7e-46     4e-42      72     257 .]     132     414 ..     121     414 .. 0.92

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 6.7e-46
                 -CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCC..............................HCCCHHHHHHCCCTTSHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  72 kskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnr..............................evaeekwkkhlkrndslitdlfe 140
                  +  v+P++++  l++l++ f+g+  qDa+Efl+flL+++ e++++                              +++++        ++ ++++lfe
  CDO68477.1 132 DKGTVAPRAFIDKLKELNELFRGSAHQDAHEFLNFLLNRIMEEMEDdrrrlpnppppsgdglsnsvatlstlppasSSSSSSAPLPNGFHSTIVHRLFE 230
                 5779********************************************************************9874333333366667788999***** PP

                 EEEEE..............................................................EEEEEEB-SEEEEEEESEEETEE...EEE--S CS
                 xxxxx..............................................................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF
         UCH 141 gqlks..............................................................klklkrlPeiLiihlkRfsynss...ksKlnt 174
                 g l+s                                                              ++k+k+lP+iL +hlkRf+y+++    +Kl  
  CDO68477.1 231 GVLTSetrcltcetvssrdesfldlsidieqnssvtaclrqfsasemlcqknkffcdsccdlqeaekRMKIKKLPNILALHLKRFKYQEDvgkYIKLAY 329
                 ***************************************************************************************9999******** PP

                 EEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT........CEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx RF
         UCH 175 kvefpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevkeeeevls........sayiLfY 257
                 +v fp++l l +++++ ++++    + YeL+a+vvH+G ++ +GHYv++ik  ++g+W+ +dD++v+ +ke+ ++ +        say+L+Y
  CDO68477.1 330 RVAFPLQLRLFNTVDDAEDPD----RLYELFAIVVHIGtGPYHGHYVTIIK--ARGSWMLFDDDNVTTIKES-DIPKyfgdsnsgSAYVLYY 414
                 ***********9999777776....45************************..88***************98.444456666779******9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   1.8e-25   1.1e-21     104     319 ..     162     388 ..      56     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.8e-25
                 xxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 104 sfnrflldqlekelketkkns....................................seeesaieqllgtkaettirclkCgseksrksstlvldlkyP 166
                 +f +fll+++ +e +  + +                                       +++++++l++  +++++rcl+C++ +sr++s+l l++   
  CDO68477.1 162 EFLNFLLNRIMEEMEDDRRRLpnppppsgdglsnsvatlstlppasssssssaplpnGFHSTIVHRLFEGVLTSETRCLTCETVSSRDESFLDLSIDI- 259
                 577888888888877655444788899999999999999999999999999999988888899999***************************98855. PP

                 xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 167 kpsnekkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakle.eeeelelwktk.nwlpleiklsldedknleeklke 260
                  +      +++++  +l+++  +    ++++ +C++C   q  e+r ++k+lP++Lal++k++  +      ++  ++++l +++          +l+ 
  CDO68477.1 260 -E------QNSSVTACLRQFSASemlCQKNKFFCDSCCDLQEAEKRMKIKKLPNILALHLKRFkYQ------EDVgKYIKLAYRVAF------PLQLRL 339
                 .3......3344455555544442224899*******************************98433......344566666666632......234444 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 261 erekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDfl 319
                  ++ ++ae+  + YeL+++vvhig++  +gh+v+++k            ++W+lF+D +
  CDO68477.1 340 FNTVDDAEDPDRLYELFAIVVHIGTGPYHGHYVTIIKA----------RGSWMLFDDDN 388
                 4555566778899***********8888*********5..........479******65 PP

>> Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8     3e-05      0.18     168     208 ..     283     324 ..     221     332 .. 0.68
   2 ?    2.1   0.0     0.018   1.1e+02     229     255 ..     368     393 ..     349     400 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
  Peptidase_C98 168 lapCnkCkk.keqrrkmvlekvpsvlmlHFveGLphndleky 208
                       C++C++ +e +++m+++k+p++l+lH      ++d+ ky
     CDO68477.1 283 KFFCDSCCDlQEAEKRMKIKKLPNILALHLKRFKYQEDVGKY 324
                    3458887763677899*************9877667666666 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.018
  Peptidase_C98 229 lkHFvtwirnsdgsWlecDDLkgpvck 255
                    + H+vt i ++ gsW+ +DD + +++k
     CDO68477.1 368 HGHYVTII-KARGSWMLFDDDNVTTIK 393
                    46999965.689********8766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.50
# Mc/sec: 3190.21
//
Query:       CDO68478.1  [L=1467]
Description: hypothetical protein BN946_scf184499.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.8e-216  719.4   0.0   2.8e-215  716.6   0.0    2.2  1  DUF3292          Protein of unknown function (DUF3292)
    8.6e-69  231.2   0.0    5.5e-68  228.6   0.0    2.1  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.3e-31  108.9   0.0    4.8e-30  103.8   0.0    2.9  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    4.8e-18   65.7   0.0    2.2e-17   63.6   0.0    2.1  2  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    4.4e-09   36.2   0.0    8.9e-09   35.2   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    4.6e-08   32.8   0.0    2.8e-07   30.3   0.0    2.0  2  ATP-grasp        ATP-grasp domain
     0.0032   17.2   0.0     0.0064   16.3   0.0    1.4  1  PRT_C            Plant phosphoribosyltransferase C-terminal
  ------ inclusion threshold ------
       0.07   12.7   0.0       0.12   12.0   0.0    1.3  1  ATP-grasp_4      ATP-grasp domain


Domain annotation for each model (and alignments):
>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  716.6   0.0  1.2e-218  2.8e-215      18     650 .]     753    1466 ..     742    1466 .. 0.90

  Alignments for each domain:
  == domain 1  score: 716.6 bits;  conditional E-value: 1.2e-218
     DUF3292   18 aaqkeeeeeevkdlgWnekkeeieeplveglsNedlwlLiRRfnkqiyhvkavpeaplgeLDLniadeeefspdKLranlERlYmtvvvgllalvkh 114 
                   +q e ++ evkdlgW++++++i+ +l++g+sN+dl++LiRRfnkqi hv+a+p +p+g LDL+i+++eefspdKLran+ERlYmtv+vgl+a+ kh
  CDO68478.1  753 RVQSELDDPEVKDLGWRKDSTHIP-SLIKGISNDDLFMLIRRFNKQIQHVRAIPPPPPGFLDLEISEDEEFSPDKLRANIERLYMTVIVGLAAFGKH 848 
                  567788899***********9996.89********************************************************************** PP

     DUF3292  115 iarLrsWretrrtaafcavYfvaWlldllvpllvavlivLilvpeaRellFPpaplalvdsktggvqkPkaGvlgskdsvTGApekhkGEavEqEAs 211 
                  iarLrsW+e+rrta fc++YfvaW++ l+  ll+++++v+i+ p+ R+ lFPpapla v++++g++q P+aG lgskds+ GApe h+GEavEqEAs
  CDO68478.1  849 IARLRSWNEPRRTAKFCVAYFVAWYFSLVPALLIGTILVVIFRPDYRQNLFPPAPLAAVSATSGNLQVPRAGSLGSKDSLSGAPEAHQGEAVEQEAS 945 
                  ************************************************************************************************* PP

     DUF3292  212 nlvnsiasvaissaagkhpqeepe..........................eeekaedkapdptalatkaadakdkaeg.eekskkhdktkePmeeav 281 
                   +v+++ ++  +++ g+    +++                          ++++ +   pdp++l+ +a+++kd+a++ + ++++ d +k+ +e+a+
  CDO68478.1  946 HFVAALGAIGAGTVIGQGGSPKRKhgeprsdalgdaagemetetnldpdaSDDSFAGGLPDPSDLTLHAKNVKDTANSdGVPDPAADVAKKSVESAL 1042
                  **************997655444444566889998888887777665554446677789**************9987516799************** PP

     DUF3292  282 wekmrpvmhvladvaDtwErfaNaLsPtppFpkeaprlrlaavllplllvslfvssylvvklvtflvGfafFgdpiiqrglkllnrkvpnWqkllel 378 
                  wekmrpvm++ladvaDtwErf+Na++P ppFpk ++rlrla+vl+pll+vs+fv + lvv+++tf++G++fFg+pii+r  + +n+++p+W+kllel
  CDO68478.1 1043 WEKMRPVMRILADVADTWERFGNAIEPVPPFPKYEARLRLAGVLAPLLVVSVFVPAALVVRGATFGIGVGFFGQPIISRLASQVNHRFPHWRKLLEL 1139
                  ************************************************************************************************* PP

     DUF3292  379 rntlLkgvPTnaQLtltLLRiGEankaPlPpppss......kekppekpae.lkdeelraeagedepldaseeeleeaiepdeekakekeee..... 463 
                  r+tl+kgvPTnaQLtltLLRi+E+ kaPlPppp s      +  +  +pa  +  ++++a  ++d ++d+++ ++e +   d+ +a +++ +     
  CDO68478.1 1140 RRTLFKGVPTNAQLTLTLLRIAEQAKAPLPPPPVSlpqhtaNAVKDANPAPnHPPQAAEALREHDFAFDTDNYDIEGVDP-DHPRAYADHASvegel 1235
                  *********************************99554222111122333322334455555666777888878776544.4444444444446778 PP

     DUF3292  464 .....keeekekkkkkkkgskilgllkgttkggvktalavdkvkakvgsehaknrlgvlkk.............................kgkkkee 526 
                       +e +++ ++kkkkgsk++g +k+t+++gv++ l++d++kak+g+ehak rlg++++                             + + ++ 
  CDO68478.1 1236 tddesTEGAADGERKKKKGSKVIGAIKKTAHTGVSGVLGLDRLKAKIGNEHAKRRLGAVAPpsdqqnadgtpptvdptadekerekelakERADAAL 1332
                  8777667778888999*******************************************999**********************9998853455566 PP

     DUF3292  527 eeaGPveFearykgkkGavyidssatapvvaftte..........aeledseseeeeklkplwsvavadikelkKvgGlgwkaklvvgwalerevaD 613 
                  + +GP +F++ry+gkkG++++ + a +p++++t e          +++  +  +++e + +  ++  +di+ l+K+gG+gwk+++vv wa+ r+v D
  CDO68478.1 1333 KREGPTSFSGRYHGKKGRLLLITGAASPCLSWTPEkplraalmapSKIPGKGGDDSEGIPAEVTIGLSDIASLRKMGGFGWKGRMVVAWATGRDVLD 1429
                  789*******************************99******99888889999999999************************************** PP

     DUF3292  614 glvivdkegkeykltavklRdeLFNrLvaiggqkWes 650 
                  gl++v ++g++++ ta++ RdeLFNrL ++g+q We+
  CDO68478.1 1430 GLEVVSRRGDRWVFTAIRGRDELFNRLLSMGKQSWEC 1466
                  ***********************************95 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   6.3e+02       2      25 ..     227     250 ..     226     268 .. 0.84
   2 !  228.6   0.0   2.4e-71   5.5e-68      36     209 ..     278     451 ..     271     453 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
                  HHHHHHHHHHTT-BBSSEECSSBS CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapve 25 
                  k+++k+++++++vpvvp+ ++  +
   CDO68478.1 227 KSESKNIMSAAGVPVVPGYHGSNQ 250
                  77899*************999544 PP

  == domain 2  score: 228.6 bits;  conditional E-value: 2.4e-71
                  HH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS- CS
  CPSase_L_D2  36 eigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslqlrtqkvievAPsqtL 133
                   +gyPv+ika  g+GGkGmr++++ +e++e++++a++ea  af+n+ vlvek++++p+++Ev+v +D+ g ++ + er++s+q+r+qk+ie+AP++ L
   CDO68478.1 278 ALGYPVLIKAVHGGGGKGMRIVHSPAEFQEALASAQREALKAFANADVLVEKYITRPRHVEVQVFADTLGACVSLWERDCSVQRRNQKIIEEAPAPGL 375
                  68************************************************************************************************ PP

                  -HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GC CS
  CPSase_L_D2 134 tdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLe 209
                  ++e r  l ++av+++++v++vgagtvef++d++++++y++E+NtRl+ve++++e++TGldlv++++ +a+g++L+
   CDO68478.1 376 SPELRADLSAKAVAAAKAVNYVGAGTVEFIFDNDTHKFYFMEMNTRLQVEHPVTEMITGLDLVEWQLEVAAGNPLP 451
                  *************************************************************************997 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   2.1e-33   4.8e-30       1     106 [.     465     598 ..     465     600 .. 0.98
   2 ?   -1.7   0.0       1.4   3.1e+03      72      94 ..    1139    1161 ..    1133    1167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 2.1e-33
                    EEEEESEETTTTTEE--CE-SEEE--............................-STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelp............................egpgvRvdsgveegsevspyyDsllaKlivhgetreealarl 68 
                    eaRi+aE+p++nflp+sG++ +l++p                              p vR+++g+e+g+++  +yD+++aKl+vhg++r+eal+ l
     CDO68478.1 465 EARIYAENPRNNFLPDSGQLLYLSTPepthifapavaapsaeadftpvvntaavLTPVVRLEQGFEQGAQIGVFYDPMIAKLVVHGRDRTEALRML 560
                    89*************************************************99999**************************************** PP

                    HHHHHT-EEESS-BSHHHHHHHHH-HHHHHT---TTTC CS
  Biotin_carb_C  69 rraLaelrieGvktnieflrailedeefakgeldtkfl 106
                    rraL+e+r+ Gv+tn+eflr+++ +e+f+++e++t+f+
     CDO68478.1 561 RRALDEYRVVGVATNVEFLRTLAGNEAFVRAEVETGFI 598
                    *************************************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                     HHT-EEESS-BSHHHHHHHHH-H CS
  Biotin_carb_C   72 LaelrieGvktnieflrailede 94  
                     L+++  +Gv+tn+++  ++l+ +
     CDO68478.1 1139 LRRTLFKGVPTNAQLTLTLLRIA 1161
                     7788899********99998755 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   9.6e-21   2.2e-17      50     110 .]     161     221 ..     147     221 .. 0.91
   2 ?   -3.1   0.0       5.3   1.2e+04      14      52 ..     387     425 ..     382     430 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 9.6e-21
                    EEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHHHTT-EESSS-HHHH CS
  Biotin_carb_N  50 elgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeaveeagivfiGPsaeal 110
                    +++p ++++  l+i++i++++k+sga+avhpGyGflsEna+fa++++++givfiGP+++a+
     CDO68478.1 161 SVPPLPPRAMQLRIDNIIDVCKRSGAQAVHPGYGFLSENAHFADRLAREGIVFIGPPPSAI 221
                    566777788889*********************************************9986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
                    HHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEE CS
  Biotin_carb_N  14 Avriiravrelgietvavyseedanslhvreadeavelg 52 
                    Av  ++av+ +g  tv  + ++d+++ +  e ++ ++++
     CDO68478.1 387 AVAAAKAVNYVGAGTVEFIFDNDTHKFYFMEMNTRLQVE 425
                    677788888889999999999999999888888887776 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0     4e-12   8.9e-09      33     174 ..     277     420 ..     272     421 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 4e-12
                      HHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHT......T-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC. CS
  Dala_Dala_lig_C  33 eelgypvfVKpareGSSvGvskveseeelkeaieeafk......ydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakysd 119
                       +lgypv++K+++ G   G+  v+s +e++ea+++a +       +++vlvE++i + r +ev v  +    + ++ e+  +  + + ++k + 
       CDO68478.1 277 RALGYPVLIKAVHGGGGKGMRIVHSPAEFQEALASAQRealkafANADVLVEKYItRPRHVEVQVFADTLGACVSLWERDCS--VQRRNQKII- 367
                      579***************************999988762222334689*******99**********777777777776554..445555554. PP

                      TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 120 dkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                           e pa  l++e ++ +++ a+ a ka++  G + v f+  +++ ++++ E+Nt
       CDO68478.1 368 ----EEAPApGLSPELRADLSAKAVAAAKAVNYVGAGTVEFIFdNDTHKFYFMEMNT 420
                      ....45555379******************************9556789*******9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.2e-10   2.8e-07      25     159 ..     277     421 ..     271     423 .. 0.87
   2 ?   -0.6   0.0      0.38   8.6e+02     114     146 ..     548     581 ..     533     592 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.2e-10
                 HHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEEEEETTEEEEEEECEE. CS
   ATP-grasp  25 eelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGe.tafypvvetvqedgilrlsvapae. 113
                 ++lg+pv++K +++g  GkG  +v+s+++ ++al+ +        ++  v+vE+++   + + v v  ++ G+ ++ ++    vq+++   +  apa+ 
  CDO68478.1 277 RALGYPVLIK-AVHGGGGKGMRIVHSPAEFQEALASAqrealkafANADVLVEKYITRPRHVEVQVFADTLGAcVSLWERDCSVQRRNQKIIEEAPAPg 374
                 689*******.89999*****************99999999999999***************9999999999867889999999999888888888863 PP

                 -SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS CS
   ATP-grasp 114 vsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapR 159
                 +s +  +   + a  +++++++vG  +vE+   +d +  ++ E+  R
  CDO68478.1 375 LSPELRADLSAKAVAAAKAVNYVGAGTVEFIFDNDTHkFYFMEMNTR 421
                 5677888889999999*************866555445888888766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.38
                 -SCHHHHHHHHHHHHHHHHHTSSEEEE.EEEEEE CS
   ATP-grasp 114 vsekaqkkaeeiakkiveeLggvGvfa.vElFvl 146
                 v+ ++  +a ++++++++e  +vGv + vE+  +
  CDO68478.1 548 VHGRDRTEALRMLRRALDEYRVVGVATnVEFLRT 581
                 5667888999***************854787655 PP

>> PRT_C  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06    0.0064      62     137 ..     825     898 ..     821     906 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
       PRT_C  62 drlRsvagr.vqtvlGdvAtqgErlqallswrDpratalflllclvvavvlyvvpfkvlvlllglyllrhprfRskl 137
                 d+lR+  +r  +tv+  +A+ g ++  l sw++pr ta f++  +v   ++y+  + +l++ ++l ++  p +R++l
  CDO68478.1 825 DKLRANIERlYMTVIVGLAAFGKHIARLRSWNEPRRTAKFCVAYFV---AWYFSLVPALLIGTILVVIFRPDYRQNL 898
                 89998777725899999********************988665554...4444444456666666677778888764 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.12       2      62 ..     280     332 ..     279     352 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyie 62 
                   +Pv iK + g +  G++++++++e+++a+a+ ++e+  +k+        ++++lvE+yi 
   CDO68478.1 280 GYPVLIKAVHGGGGKGMRIVHSPAEFQEALASAQREA--LKA------FANADVLVEKYIT 332
                  69******************************99773..333......3466789999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 9214.43
//
Query:       CDO68479.1  [L=427]
Description: hypothetical protein BN946_scf184499.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2513.38
//
Query:       CDO68480.1  [L=386]
Description: hypothetical protein BN946_scf184499.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-10   39.5   0.1    1.2e-09   37.9   0.1    1.9  1  F-box-like  F-box-like
    0.00082   19.2   3.6     0.0011   18.8   0.0    2.8  3  F-box       F-box domain
  ------ inclusion threshold ------
      0.093   12.7   0.9       0.34   10.9   0.1    2.2  2  ELYS        Nuclear pore complex assembly
       0.11   12.7   0.9       0.29   11.4   0.0    2.1  2  DUF3176     Protein of unknown function (DUF3176)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   2.7e-13   1.2e-09       6      48 .]      53      93 ..      53      93 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 2.7e-13
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvlr 48
                d+iL  IFs+L+p+d +r+alVC rW+r a  tp  ++++vlr
  CDO68480.1 53 DDILQGIFSWLSPNDAARAALVCTRWHRSA--TPAAYSHVVLR 93
                78****************************..99******986 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-07    0.0011       8      35 ..      53      80 ..      52      83 .. 0.93
   2 ?   -2.6   0.1       1.2   5.6e+03      27      43 ..     106     122 ..     101     124 .. 0.75
   3 ?   -0.3   0.3      0.24   1.1e+03       2      12 ..     135     145 ..     134     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-07
                HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box  8 sevlrhILerLplsdllalrrVSkgwri 35
                +++l  I+++L++ d  ++++V+++w++
  CDO68480.1 53 DDILQGIFSWLSPNDAARAALVCTRWHR 80
                689999********************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 CTT-HHHHHHHTTHHHH CS
       F-box  27 rrVSkgwrilidsdrlw 43 
                  +VS ++r+ ++++ l 
  CDO68480.1 106 LSVSAHLRQHVRHLTLI 122
                 57999999999887665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.24
                 HHHHS-HHHHH CS
       F-box   2 tlsrLPsevlr 12 
                 +l +LP+++lr
  CDO68480.1 135 WLADLPLDLLR 145
                 6889*****98 PP

>> ELYS  Nuclear pore complex assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.6e-05      0.34     111     206 ..      51     142 ..      19     144 .. 0.73
   2 ?   -0.4   0.1      0.21   9.3e+02      72     106 ..     195     230 ..     172     331 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
        ELYS 111 lspkefadkilqvLlergdaslalaylravkpplssseavealfvllargsvteAfsfqRslsdkekreelleelvelclee..aarklkeLlelpld 206
                 +++ ++ + i + L+ +++a++al   r+ +   s + a  a+   + r     Af ++R+ls +++ ++ +++l  +c+++  +   l+ L++lpld
  CDO68480.1  51 YVD-DILQGIFSWLSPNDAARAALVCTRWHR---SATPA--AYSHVVLRFWTPSAFRLARTLSVSAHLRQHVRHLTLICFDPdaRCPPLDWLADLPLD 142
                 222.333355555555588888888888888...44444..68888889999***********888999************977556679******98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
        ELYS  72 edFaaafglprklvllvqglwlLDhgef.eealelL 106
                 ++Fa++ +l + +++ ++ ++ L       e + lL
  CDO68480.1 195 QAFAETSSLATLSQQVIRPFYDLHALRQeAEKCGLL 230
                 556666666666666666666665542224444444 PP

>> DUF3176  Protein of unknown function (DUF3176)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.5e-05      0.29      43      81 ..     228     264 ..     224     278 .. 0.84
   2 ?   -2.1   0.2      0.97   4.3e+03      23      43 ..     321     341 ..     310     344 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.5e-05
     DUF3176  43 gisqlkWrwfsekprplsdleafdeasrGpwgalkllwr 81 
                 g+ +++W+++ +  ++l++le + +as+Gp+  + l++ 
  CDO68480.1 228 GLLIARWSHAGQ--TSLAELENVINASSGPFPRMNLIVL 264
                 67799*****76..*****************99998875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.97
     DUF3176  23 vliailstvakaalllavaeg 43 
                 ++ a l t+++a l++av ++
  CDO68480.1 321 AMTAGLHTLFSAPLAIAVLSC 341
                 445666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2661.35
//
Query:       CDO68481.1  [L=683]
Description: hypothetical protein BN946_scf184499.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-154  513.5   0.0    1.4e-87  294.6   0.0    2.2  2  DUF3292   Protein of unknown function (DUF3292)
    0.00057   19.7   0.1      0.001   18.8   0.1    1.3  1  PRT_C     Plant phosphoribosyltransferase C-terminal


Domain annotation for each model (and alignments):
>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.6   0.0   1.6e-91   1.4e-87      17     306 ..      58     367 ..      41     367 .. 0.89
   2 !  218.6   0.0   1.6e-68   1.4e-64     380     649 ..     365     681 ..     364     682 .. 0.82

  Alignments for each domain:
  == domain 1  score: 294.6 bits;  conditional E-value: 1.6e-91
     DUF3292  17 gaaqkeeeeeevkdlgWnekkeeieeplveglsNedlwlLiRRfnkqiyhvkavpeaplgeLDLniadeeefspdKLranlERlYmtvvvgllalvkhi 115
                 ++++   ++ evkd  W+e++++i+ +l+eg sNedl++L+RRfn+q  +v a+p   +g LDL ++d+eefs +KLr n ER+Ymtv+vg++++ khi
  CDO68481.1  58 SSKKSGLDDPEVKDHAWREDTTRIP-SLIEGSSNEDLFMLVRRFNQQFQQVNAIPPLRPGLLDLDVSDDEEFSLEKLRVNTERFYMTVIVGMANFGKHI 155
                 3334445678***********9996.89*********************************************************************** PP

     DUF3292 116 arLrsWretrrtaafcavYfvaWlldllvpllvavlivLilvpeaRellFPpaplalvdsktggvqkPkaGvlgskdsvTGApekhkGEavEqEAsnlv 214
                 arLrsW+e+rrta fc++Y++aW++  +  ll++ ++ +++ p+ R+ lFPpapla v+  +g++q P+aGvl+s+ds+ GA e hkGEavEqEA  +v
  CDO68481.1 156 ARLRSWNEPRRTAGFCIAYCIAWYFSSISALLIGAVLLVMFRPDYRAKLFPPAPLAAVSVVSGNLQVPSAGVLASEDSLSGAHEAHKGEAVEQEAVQFV 254
                 *************************************************************************************************** PP

     DUF3292 215 nsiasvaissaagkhpqeepe....................eeekaedkapdptalatkaadakdkae.geekskkhdktkePmeeavwekmrpvmhvl 292
                 ++i s++ s ++g++  ++++                    ++++a++ + d ++l+ ++++ +++ + ++ ++++ d + + +e+a+w+k+rp+m++l
  CDO68481.1 255 AAIGSIVSSLVMGERGSAKRKygqprsdtvggtgrgsdtetDDTSATAVMHDLSDLVFHTKNIENRRNlDGASKPEADEATKNIESALWKKTRPFMRTL 353
                 ********999999888877777787889998887766554445556667788888888887776544244566899999999**************** PP

     DUF3292 293 advaDtwErfaNaL 306
                 a++a +wErfa  L
  CDO68481.1 354 AEIAAVWERFAKTL 367
                 **********9765 PP

  == domain 2  score: 218.6 bits;  conditional E-value: 1.6e-68
     DUF3292 380 ntlLkgvPTnaQLtltLLRiGEankaPlPpppss....kekppekpaelkd...eelraeagedepldaseeeleeaiepdeekakekeee........ 463
                 +tlLk vPTn QLtltLLR++E+ kaPlPppp s    +  + ++ ++++    +++ a +++d  + +++ e+e  + pd++ a ++  +        
  CDO68481.1 365 KTLLKEVPTNVQLTLTLLRLAEQAKAPLPPPPISpphhTAGTVDERHSTQGhprQAVAALKEHDFSFATENYEIE-GVDPDRTLAYTDDASlnaklsde 462
                 79*****************************99843222222223322222000222222333333444444443.23344443333333367777777 PP

     DUF3292 464 ..keeekekkkkkkkgskilgllkgttkggvktalavdkvkakvgsehaknrlgvlkk.....................kgkkkeeeeaGPveFearyk 539
                    + +++ ++kk+ g+kilg +k+t++++v++ l++d+v+ak+gse+ak+rlg ++                      + ++++ + +GP +F+ary+
  CDO68481.1 463 egIRGAEKGEEKKTAGKKILGAIKKTANTSVSGVLGLDHVMAKLGSESAKHRLGTVAAlpsaeqdenlttiaaygrvhdERAEAALHLEGPTSFSARYH 561
                 775666777788999*****************************************9999***************99864556667799********** PP

     DUF3292 540 gkkGavyidssatapvvaftte..........aeledseseeeeklkplwsvavadikelkKvgGlgwkaklvvgwalerevaDglvivdkegkeyklt 628
                 g+kG+v++ +sa +p+++++ e          ++  ++  ++ + +++  ++  adi  l+K+gG+gwk++  v wa+++ v Dgl+++ + g++++ t
  CDO68481.1 562 GEKGRVLVLTSAASPCLTWAPEkrlraallspSKGLEKGGDNADGISAELTIGLADIVSLRKMGGFGWKGRAFVAWATDKVVLDGLEVMVRGGDRWEFT 660
                 ********************9999***9998766666777888899***************************************************** PP

     DUF3292 629 avklRdeLFNrLvaiggqkWe 649
                 a++ RdeLFNrLv++g+q We
  CDO68481.1 661 AIRGRDELFNRLVSMGKQSWE 681
                 ********************9 PP

>> PRT_C  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.2e-07     0.001      62     137 ..     131     204 ..     127     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-07
       PRT_C  62 drlRsvagrv.qtvlGdvAtqgErlqallswrDpratalflllclvvavvlyvvpfkvlvlllglyllrhprfRskl 137
                 ++lR  ++r  +tv+  +A  g ++  l sw++pr ta    +c++ ++++y+ ++ +l++ ++l ++  p +R kl
  CDO68481.1 131 EKLRVNTERFyMTVIVGMANFGKHIARLRSWNEPRRTA---GFCIAYCIAWYFSSISALLIGAVLLVMFRPDYRAKL 204
                 68888888853899999*******************97...67999****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4615.84
//
Query:       CDO68482.1  [L=1714]
Description: hypothetical protein BN946_scf184499.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-41  140.6   0.0    2.8e-39  135.1   0.0    2.8  2  UCH        Ubiquitin carboxyl-terminal hydrolase
    1.7e-26   91.9   2.6    2.2e-17   62.7   0.0    3.0  3  RPT        A repeated domain in UCH-protein
    2.4e-08   34.0   0.2      0.003   17.2   0.1    2.4  2  UCH_1      Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.014   14.9   0.8      0.035   13.6   0.8    1.6  1  NnrU       NnrU protein
        0.1   12.8   1.8       0.19   11.9   0.1    2.4  2  DUF4633    Domain of unknown function (DUF4633)
       0.19   11.6   1.2       0.68    9.8   1.2    2.0  1  LapA_dom   Lipopolysaccharide assembly protein A domain
        0.2   12.6   2.1        1.5    9.7   0.1    3.0  2  Fes1       Nucleotide exchange factor Fes1
       0.25   10.5   1.0       0.47    9.5   1.0    1.4  1  Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.092   2.1e+02      58     106 ..     928     973 ..     861     980 .. 0.84
   2 !  135.1   0.0   1.3e-42   2.8e-39       2     257 .]    1127    1692 ..    1126    1692 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.092
                 HHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  58 akalkdlfkellkskskavsPkklkktlsklaksfsgykqqDaqEflaf 106
                 +++l ++++ +   +  +  P++l + + +++++f  y+q D qE  ++
  CDO68482.1 928 FNHLWTIVNTMM--QLGQNVPQELQTLIVEERSRF-RYTQDDLQESAKV 973
                 445556666666..3556679**************.6*******97665 PP

  == domain 2  score: 135.1 bits;  conditional E-value: 1.3e-42
                  EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-..TT.TTS.TTH................HHHHHHHHHHHHHSH-CCEE--... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxx... RF
         UCH    2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkel.nesnplgkkge................lakalkdlfkellkskskavsP... 78  
                  Gl+ lGntCy+ns+lQ++++i+ lr  + s+++ ++++ ++++  +   +  k+++                +++ l+dlf ++   ++ +++P   
  CDO68482.1 1127 GLNQLGNTCYLNSLLQYFYTIKDLRAAIVSIAQADAKELDDSKFtD---DDLKRHRvggrlvtrrevmrskkFVNLLADLFFNMEYCENPSITPkie 1220
                  9************************999998777766666655331...222222234567777777777778888888888888556778888888 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH   79 ................................................................................................. 78  
                                                                                                                   
  CDO68482.1 1221 laklalvttqdeeedendkagtdssndtdatlvddmpprptydratssplqsptesvlgkrsrdgdssmdidtsapvaspserlepaakratsppsa 1317
                  8888888888888888888888999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                  .........................................HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSH CS
                  .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   79 .........................................kklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndsl 134 
                                                              ++t  +  + +  ++q+D+ E++ +++ q++ +l +     + k+++  ++s+
  CDO68482.1 1318 smqdatdlindavasssklrpvdastdvemkdemqtskappLPPRRTRTTDDSVMMFGRQHDVSECMDNCMFQIETALLD----FQGKETDDDKTSP 1410
                  9999999999999999999999999998888888888888844444444444445579********************99....44499******** PP

                  HHHHH-EEEEE...........................................................EEEEEEB-SEEEEEEESEEETEE...E CS
                  xxxxxxxxxxx...........................................................xxxxxxxxxxxxxxxxxxxxxxx...x RF
         UCH  135 itdlfegqlks...........................................................klklkrlPeiLiihlkRfsynss...k 169 
                  i++lf+g+ ++                                                           +++l  lP+ L+i+l+R+++n++    
  CDO68482.1 1411 IKRLFYGKKRQrltslspkddashqssihekedlfshlhvnvadegfdlydglaryfddvvdlggekkrmEVSLVDLPPLLQIQLQRVQFNREtqqA 1507
                  ******************************************************************************************9999999 PP

                  EE--SEEB--SEEE-GGGBSS-BTTS-TCS-B................................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................. RF
         UCH  170 sKlntkvefpeeldlssylaeekkkkteekkk................................................................. 201 
                   K++  v+f e+++++++l++ + +k++++k+                                                                 
  CDO68482.1 1508 YKSQAYVKFGETIYMDRFLDSADPTKKARSKEiqaelnaardrvhklthgkhapfapalknvadflsgqkvldipsdeelvaslrneealvteqlrr 1604
                  9******************98888887777779**************************************************************** PP

                  .......................EEEEEEEEEES.CTTSEEEEEEEECTTTTE..EEEEETTEEEEE-HHCCCTT.......CEEEEEE CS
                  .......................xxxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx.......xxxxxxx RF
         UCH  202 .......................YeLiavvvHsG.slssGHYvayiknekngk..WykydDetvkevkeeeevls.......sayiLfY 257 
                                         YeL++v++H+G s+s GHY+ y +n   +   W+ky+D+ v++v+++ evl        ++y+L++
  CDO68482.1 1605 erertvqlkqqlediwkddtsaaYELTSVFIHRGsSPSWGHYFFYSRNLPTNPdaWFKYNDSDVTAVSKD-EVLAdttgstaNPYMLVF 1692
                  ***********************************************55444467*************77.77777888899****986 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.6e-10     1e-06       9      55 ..     982    1037 ..     980    1039 .. 0.87
   2 !   62.7   0.0   9.8e-21   2.2e-17       2      59 .]    1050    1107 ..    1049    1107 .. 0.98
   3 ?   -3.5   0.2       4.8   1.1e+04      35      47 ..    1147    1159 ..    1146    1160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.6e-10
         RPT    9 Lgi..dentdDdviitayqvkled......dp.sqkdklrrALkvIAeeRkSelLl 55  
                  Lg+  d+++dDd+ii a +++ +       d+ ++++kl+ AL+ +Ae+R Se+L+
  CDO68482.1  982 LGVelDDEVDDDFIIQAWRSARQRawqsptDAtDRRAKLNDALRLVAEHRGSEKLF 1037
                  78776999**********999977777788555*********************97 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 9.8e-21
         RPT    2 veeAyklLgidentdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnfLe 59  
                   e+Ay++L++++++d+ +++t+y++++ed+psq++ +r+AL+vIAe  +S++L+ fLe
  CDO68482.1 1050 PETAYSTLEVPKEVDEAMLLTVYSMRVEDQPSQAERMREALSVIAEVTNSDRLRKFLE 1107
                  699*****************************************************97 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.8
         RPT   35 kdklrrALkvIAe 47  
                  +++lr+A+ +IA+
  CDO68482.1 1147 IKDLRAAIVSIAQ 1159
                  5789*******97 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-05     0.024       2      35 ..    1127    1159 ..    1127    1180 .. 0.80
   2 !   17.2   0.1   1.3e-06     0.003     236     320 .]    1510    1668 ..    1475    1668 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1    2 GLEnhivnsYlNslLQvlyfipplrnlalshlak 35  
                  GL    +++YlNslLQ +y i+ lr++++s + +
  CDO68482.1 1127 GLNQLGNTCYLNSLLQYFYTIKDLRAAIVSIA-Q 1159
                  6777789******************7666544.3 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.3e-06
                  x.........................................................................xxxxxxxxxxxxxxxxxx..... RF
       UCH_1  236 t.........................................................................knwlpleiklsldedknl..... 254 
                                                                                            +    +e          l     
  CDO68482.1 1510 SqayvkfgetiymdrfldsadptkkarskeiqaelnaardrvhklthgkhapfapalknvadflsgqkvldipsD----EE----------Lvaslr 1592
                  345555555555555555555555555444444444444444444444444444444444444433322222220....22..........122222 PP

                  ................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  255 ................eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320 
                                  + +lk++ e+  ++++++ YeL+sv +h+g+s + gh+  + +    +    ++++ W++ ND +V
  CDO68482.1 1593 neealvteqlrrererTVQLKQQLEDIWKDDTSAAYELTSVFIHRGSSPSWGHYFFYSRN---LP---TNPDAWFKYNDSDV 1668
                  23333555555556656667777777788999**************9988*********4...43...3789*******987 PP

>> NnrU  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   1.6e-05     0.035      21      88 ..     172     239 ..     163     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
        NnrU  21 lRarliarlGergykilyslvsllglvlliigfgaaryevllWeppawlrhlalllmlvafillaaal 88 
                 lRa + ++ G   +ki ++++s+ ++  l ++f+     v +W+p + lr +  +l+++ +i+++ + 
  CDO68482.1 172 LRAVQHRHEGCDYWKIWFTIASISLFLQLGVAFFIGAILVSVWSPYPTLRDILGVLIIIWVIFWLGSA 239
                 556666778999***************9999999888889*******************999998765 PP

>> DUF4633  Domain of unknown function (DUF4633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       3.6   8.1e+03      13      79 ..    1258    1329 ..    1257    1337 .. 0.47
   2 ?   11.9   0.1   8.3e-05      0.19      49     100 ..    1571    1622 ..    1539    1633 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
     DUF4633   13 PrpsYgkLq.epwgrplegrl.rRalslrqgreksRsrdlesgpegldvpgqei...lpgglgDteqliqaq 79  
                  Prp+Y++    p   p+e+ l +R+       +   s  + s +e+l+ +++     ++++++D   li   
  CDO68482.1 1258 PRPTYDRATsSPLQSPTESVLgKRSRDGDSSMDIDTSAPVASPSERLEPAAKRAtspPSASMQDATDLINDA 1329
                  677777654133444444432133333333333333444455577777665543121345677777777655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.3e-05
     DUF4633   49 dlesgpegldvpgqeilpgglgDteqliqaqqaesrrwlrqYkqqvrrrwes 100 
                  d+ sg   ld+p++e l ++l ++e l+ +q +++r    q kqq++  w+ 
  CDO68482.1 1571 DFLSGQKVLDIPSDEELVASLRNEEALVTEQLRRERERTVQLKQQLEDIWKD 1622
                  44578899*************************9999999*******99985 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.2    0.0003      0.68      10      38 ..     187     215 ..     183     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
    LapA_dom  10 flfaqvelpLsllllvafgiGallgwlls 38 
                 ++f+ ++++L l l vaf+iGa+l+ ++s
  CDO68482.1 187 IWFTIASISLFLQLGVAFFIGAILVSVWS 215
                 578889*****************998765 PP

>> Fes1  Nucleotide exchange factor Fes1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00069       1.5      34      76 ..    1058    1104 ..    1020    1108 .. 0.74
   2 ?    0.6   0.3      0.47   1.1e+03      21      65 ..    1349    1393 ..    1299    1411 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00069
        Fes1   34 sk.ekldpeildal..lg...gpsdaelmkeamevledeevtlenkliA 76  
                  +  +++d+ +l ++  +    +ps+ae+m+ea++v+   evt  ++l+ 
  CDO68482.1 1058 EVpKEVDEAMLLTVysMRvedQPSQAERMREALSVI--AEVTNSDRLRK 1104
                  3337788888877777545589**************..78888888865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.47
        Fes1   21 eqeaesaaeaakask.ekldpeildallg.gpsdaelmkeamevled 65  
                  ++ ++s a++ +  + ++ +++   +++g + + +e m ++m  +e+
  CDO68482.1 1349 DEMQTSKAPPLP--PrRTRTTDDSVMMFGrQHDVSECMDNCMFQIET 1393
                  222222222222..223334445555566455556777777766654 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.0   0.00021      0.47     179     276 ..    1526    1619 ..    1491    1621 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
   Tmemb_cc2  179 ytsddesssssvesssadsnsnseestasasksaesesqeklekileelqeikeeqerleeel.erlkeqlkkelkllkqaLqeeryryerLEeqln 274 
                    s d  ++++  s++++++ n + ++    ++ ++ +++ ++  l++++++ + q+ l+    e+l  +l++e +l+++ L  er r+ +L +ql 
  CDO68482.1 1526 LDSADPTKKAR--SKEIQAELNAARDRV---HKLTHGKHAPFAPALKNVADFLSGQKVLDIPSdEELVASLRNEEALVTEQLRRERERTVQLKQQLE 1617
                  34555555555..666666666666666...678999999*******************9755278999***************************9 PP

   Tmemb_cc2  275 dl 276 
                  d+
  CDO68482.1 1618 DI 1619
                  96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 10358.26
//
Query:       CDO68483.1  [L=499]
Description: hypothetical protein BN946_scf184499.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.6e-133  445.1   0.0     1e-128  430.0   0.0    2.1  2  ABC_ATPase  Predicted ATPase of the ABC class
     0.0066   17.0   0.0      0.011   16.3   0.0    1.2  1  AAA_23      AAA domain
     0.0077   15.9   0.2      0.017   14.9   0.2    1.5  1  AAA_29      P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.046   13.3   0.0    1.8  2  AAA_25      AAA domain
       0.17   12.8   0.0       0.39   11.7   0.0    1.5  1  TraV        Type IV conjugative transfer system lipoprotein (


Domain annotation for each model (and alignments):
>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   8.2e-06      0.03      49      98 ..       1      50 [.       1      54 [. 0.88
   2 !  430.0   0.0  2.8e-132    1e-128     135     448 .]      60     372 ..      58     372 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-06
                EEEEEE--S-HHSSSSGS-HHHHHHHHHHHHHHHHHCC....CTT-SSS- CS
  ABC_ATPase 49 vrvsvpaavakleeellkskerrvaledfllrklkaelekltsksagsgk 98
                +rv+v ++va+++ +l+++k+rrval+d+l+r++ a le+    ++g g+
  CDO68483.1  1 MRVRVTHSVAAIPPALFNNKIRRVALCDYLTREVCAVLENHFAGRRGGGQ 50
                589999*******************************9888777776665 PP

  == domain 2  score: 430.0 bits;  conditional E-value: 2.8e-132
                 ETTSE-HHHHHHHHHTTHHHHHHHHTTT-..-HHHHHHHHHHHHHHHHHHCTTTTTT-SEEEETT---SBSSTTS-SB-T..S-------GGGEEEEEE CS
  ABC_ATPase 135 egrrilgkeaiellleelpkivekvllaekldeealeehvelvedqealrkqLeelglvaFvadgsilpResgesdkPlk..eavpFesPesleveiel 231
                 +gr+ilg++a +++ + +p + ++  l+++ d+ ++   v++vedqe lr+q +++glvaFv +++ilpR+sg  d P+k  ++vpF sP++le ++ l
  CDO68483.1  60 KGRTILGEQASQVFSSVVPALARTL-LYTSHDATRMALFVDCVEDQEDLRQQVTSAGLVAFVPNDAILPRASGAADTPMKaaSVVPFRSPPNLERTFIL 157
                 79************99888887766.55668*************************************************999**************** PP

                 TTTEEEEEEEE-SSEEEEEE-TTSSHHHHHHHHHHCCSEE-TTSS-TTEEE-TT-EEE---TT--EEEE--TTTB---CCC--STTEEESS--HHHHHH CS
  ABC_ATPase 232 pngkkvsGmgipkGvtlIvGggfhGKsTLLeAlekGvynhvpgDGRefvvtdktavkiraEdgrsvkgvDispFinnLPegkdttkfstedASGStsqA 330
                 p+++ +sGm++p+G+t+I+GggfhGKsTLL Al++G+ynhvpgDGRef+vt++++v+i+ Edgr+v++vDispFi +LP g +t +fst+dASGSts+A
  CDO68483.1 158 PHRGGISGMAVPRGITMIAGGGFHGKSTLLDALARGCYNHVPGDGREFLVTSSRCVSIQGEDGRAVHSVDISPFIADLPGGVSTASFSTQDASGSTSMA 256
                 *************************************************************************************************** PP

                 HHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHHHHHHHHC CS
  ABC_ATPase 331 animealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvtekakeiaee 429
                 a ++ea+e+ga++lL+DEDt+AtN++irD+rmq+lv  +++pitplv +vr + +++g s+ilv+gg+gdy dvAd v+ m++y++ dvt+ ak+ia+e
  CDO68483.1 257 AGVVEAIEMGADTLLFDEDTCATNFLIRDRRMQRLV--SADPITPLVYKVRAMLNDHGCSSILVIGGCGDYCDVADLVLEMRNYQCFDVTKAAKQIAQE 353
                 ************************************..899********************************************************** PP

                 HT-----..........-- CS
  ABC_ATPase 430 latkrkeeaseklgevksr 448
                  +++  e++ +++g++++r
  CDO68483.1 354 IPSAVPEHEASHFGSIRAR 372
                 **99999999899988875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06     0.011      19      54 ..     170     205 ..     166     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsrks 54 
                 +g+t I G    GK+T+ldA+  ++y+++p+ +r+ 
  CDO68483.1 170 RGITMIAGGGFHGKSTLLDALARGCYNHVPGDGREF 205
                 6999**************************998864 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   4.6e-06     0.017      21      43 ..     169     191 ..     161     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.6e-06
      AAA_29  21 lkgatlltGpsGsGKSTllDAiq 43 
                 ++g+t+++G    GKSTllDA++
  CDO68483.1 169 PRGITMIAGGGFHGKSTLLDALA 191
                 5789*****************86 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05     0.046      24      85 ..     161     223 ..     146     318 .. 0.86
   2 ?   -3.6   0.0       1.9   6.8e+03     163     178 ..     414     429 ..     407     433 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
      AAA_25  24 wlvkgllpagelallaGapgtGKttlaldlalavatGkpwlg.pvapeqgkVlyvsaEdsede 85 
                   + g+ +  +++++aG +  GK+tl+  la  +    p  g ++ ++  +++ +++Ed+++ 
  CDO68483.1 161 GGISGMAVPRGITMIAGGGFHGKSTLLDALARGCYNHVPGDGrEFLVTSSRCVSIQGEDGRAV 223
                 5578999999*************************877766688889************9965 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
      AAA_25 163 sdvgalvealeriarr 178
                 s+++a+ +al++++rr
  CDO68483.1 414 SQTRAIAAALKHLRRR 429
                 4455555566665554 PP

>> TraV  Type IV conjugative transfer system lipoprotein (TraV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.39      75     112 ..     122     161 ..      81     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
        TraV  75 rasvyaevasllesPstapr..PlrkpaevmrlwiaPyvD 112
                 ++++++++++ +++P++a++  P r+p++  r+ i+P+++
  CDO68483.1 122 NDAILPRASGAADTPMKAASvvPFRSPPNLERTFILPHRG 161
                 234559***********988*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3405.61
//
Query:       CDO68484.1  [L=1112]
Description: hypothetical protein BN946_scf184499.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-16   60.8   5.1    1.8e-16   60.8   5.1    2.4  2  HET          Heterokaryon incompatibility protein (HET)
    7.4e-08   32.9   0.3     0.0082   17.0   0.0    4.5  4  WD40         WD domain, G-beta repeat
     0.0049   17.1   0.1        1.8    8.9   0.0    2.6  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   5.1     3e-20   1.8e-16       1     146 []      22     233 ..      22     233 .. 0.80
   2 ?   -2.5   0.0         1     6e+03      26      54 ..     851     879 ..     835     890 .. 0.77

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 3e-20
         HET   1 YeaLSYvWgdsk..............ekeeievng.....klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelviva 80 
                 Y+ LS+vW +++               +      +     ++ el + ++++++v+r+lg+ ++WiD  CI++++++e s+ +++m + Y++A+++iv 
  CDO68484.1  22 YAILSHVWLQKEstfqdlqrfhhearAH------NsvpvlEREELSAKIKECCRVARELGYLWVWIDTCCIDKTSSAELSEAIASMFRWYRQADVCIVF 114
                 999*****77776787777665444323......145566999******************************************************** PP

         HET  81 lgsesedsgllalealralkkekleekeielkksaek.......................................................kkellek 124
                 l + +e    +++   +a+ +++ e+  + ++ +a++                                                       +     +
  CDO68484.1 115 LHDVEELY-PQDATDSEAHPQDTAEA-YDAEEFDADDlrsqdadetylqntdglypremhklnsqdadevdsqdtddqdtdelypdeddpdlQDTDELD 211
                 **999654.33333334444444444.22222222223455667899999999999999999999999********************99988888888 PP

         HET 125 eeraieellespwfkRvWvlQE 146
                 +++a  +l++ +wf+R+W+lQE
  CDO68484.1 212 SRHADLALTRCKWFTRGWTLQE 233
                 8899999**************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
         HET  26 ltenledalqvlrklgerylWiDaiCInQ 54 
                  ++ +++ l+ + +l+  + W D+ C  +
  CDO68484.1 851 YQQAFRTSLRETPSLQSLTFWDDRSCLAR 879
                 45667777777777999999999999765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00027       1.6       9      38 .]     807     842 ..     800     842 .. 0.70
   2 ?   -2.4   0.0       1.8   1.1e+04      13      28 ..     973     988 ..     966     999 .. 0.69
   3 ?   -0.5   0.0      0.47   2.8e+03      13      27 ..    1016    1030 ..    1009    1049 .. 0.59
   4 !   17.0   0.0   1.4e-06    0.0082      11      37 ..    1063    1090 ..    1053    1091 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
                 SS.SSEEEEEEETTSSEEEE....E.ETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlas....G.sdDgtvriWd 38 
                 ++ ++v+++++s dg++la+    + ++ + +riW+
  CDO68484.1 807 TQdDDVRCFSWSADGRLLAAycrsAdGRAPALRIWN 842
                 56566*************865443233477777776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                 EEEEEEETTSSEEEEE CS
        WD40  13 vtslafspdgawlasG 28 
                 v++ +f p  +w+++ 
  CDO68484.1 973 VYGAKFVPRTDWVLCT 988
                 7888899999**9743 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.47
                  EEEEEEETTSSEEEE CS
        WD40   13 vtslafspdgawlas 27  
                  + +++ s+dg ++a+
  CDO68484.1 1016 IQHVCASHDGELVAA 1030
                  678888999999764 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 1.4e-06
                  SSEEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   11 ssvtslafspdgaw.lasGsdDgtvriW 37  
                    +++l+fsp g   la+G+ Dgtvr+W
  CDO68484.1 1063 AEIYALRFSPGGEHtLAAGMGDGTVRVW 1090
                  3499**********9999966******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00031       1.8      35      59 ..     806     830 ..     783     853 .. 0.83
   2 !    5.4   0.0    0.0038        23      32      68 ..    1058    1093 ..    1040    1097 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00031
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysd 59 
                  +++d  vr+++W+ dg+lLa  +  
   CDO68484.1 806 ATQDDDVRCFSWSADGRLLAAYCRS 830
                  468999**************98854 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0038
  ANAPC4_WD40   32 leedkedsevrsLaWkpdg.klLavaysdgevrlldae 68  
                   +       e+ +L+++p g + La ++ dg+vr+   e
   CDO68484.1 1058 T--LRVRAEIYALRFSPGGeHTLAAGMGDGTVRVWTLE 1093
                   4..56778999*****987479***********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 7895.54
//
Query:       CDO68485.1  [L=1163]
Description: hypothetical protein BN946_scf184499.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-11   42.9   6.7    8.7e-10   39.1   1.4    2.4  2  HET          Heterokaryon incompatibility protein (HET)
    1.9e-08   34.5   0.0    0.00078   19.7   0.0    4.3  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      3e-08   34.2   1.7      0.048   14.5   0.1    5.4  4  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   1.4   1.5e-13   8.7e-10       1      86 [.      22     116 ..      22     126 .. 0.83
   2 !    6.7   0.3    0.0015       8.9     132     146 .]     127     141 ..     115     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.5e-13
         HET   1 YeaLSYvWgdsk.........ekeeievng.......klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelvivalgs 83 
                 Y+ LS+vW +++         +       +       +  el + ++++++v+r++ + ++WiD  CI++++++e s+ +++m + Y++A++ ++ l +
  CDO68485.1  22 YAILSHVWLEKEstfqdlerfH-------EevpdatlEHKELSAKVKNCCKVARRQCYLWVWIDTCCIDKSSSAELSEAIASMYRWYQQADVSFAFLHD 113
                 999*****66665566665541.......133444457899***************************************************9999887 PP

         HET  84 ese 86 
                  +e
  CDO68485.1 114 LKE 116
                 664 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
         HET 132 llespwfkRvWvlQE 146
                 l + +wf R+W+lQE
  CDO68485.1 127 LERCKWFARGWTLQE 141
                 66789*********9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.06   3.6e+02      39      58 ..     534     553 ..     528     558 .. 0.86
   2 !    6.0   0.0    0.0024        14      28      83 ..     612     689 ..     606     698 .. 0.68
   3 !   19.7   0.0   1.3e-07   0.00078       2      85 ..     782     869 ..     781     874 .. 0.85
   4 ?    2.9   0.0     0.023   1.4e+02      37      69 ..     864     897 ..     862     906 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavays 58 
                   +v+ La++ dg+ La  ++
   CDO68485.1 534 ISVTMLAYSGDGRYLASLCH 553
                  579*************9886 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdg.....evrlldaesgkvvhslsvksek..........a 83 
                  ++w++         +++d +v ++aW+ d +lLa  +++      ++r+ da + +++  l+ ++++           
   CDO68485.1 612 EIWSVpldtrlsLLATSDVHVGDFAWSTDARLLAARCEEAnggpaSLRVWDAANSTCIAILREAHDTipastvacwnD 689
                  56666665555545678999****************987522444688888888888877766666556555555554 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 1.3e-07
  ANAPC4_WD40   2 swcptmDLiAlated..gellvfRlngqrvwtl...eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  + cp ++ +Alate   ++l+v   +  ++++    + ++ +s+++++++++dg+l+a    dg+vr+  + +g + ++++ ++ + ++
   CDO68485.1 782 ALCPRREWVALATEAapNSLQVVSYSTGQLVSCcgqDGETYESRIQDIRFSHDGELIAGLRVDGKVRVWRSTDGSLFSKIPRDQGE-IS 869
                  67***********9744689888887777766667777788999***********************************9998875.65 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.023
  ANAPC4_WD40  37 edsevrsLaWkpdg.klLavaysdgevrlldaes 69 
                  +++e++ ++++p g + La  + dg++r+   e+
   CDO68485.1 864 DQGEISRFRFSPGGeHTLATEMMDGTIRIWTLEQ 897
                  67899999999987479************98775 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.091   5.4e+02      13      38 .]     536     567 ..     528     567 .. 0.72
   2 ?    2.6   0.0     0.048   2.8e+02       9      38 .]     630     662 ..     622     662 .. 0.81
   3 !   14.5   0.1   8.1e-06     0.048      12      37 ..     824     850 ..     806     851 .. 0.78
   4 !    9.4   0.0   0.00034         2      13      37 ..     868     893 ..     858     894 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.091
                 EEEEEEETTSSEEEE.EE.....TTSEEEEEE CS
        WD40  13 vtslafspdgawlas.Gs.....dDgtvriWd 38 
                 vt la+s dg++las ++     d  ++ +Wd
  CDO68485.1 536 VTMLAYSGDGRYLASlCHsrpqrDQESIIVWD 567
                 77899********9755434444477777776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.048
                 SSSSEEEEEEETTSSEEEE......EETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawlas......GsdDgtvriWd 38 
                  H  v ++a+s d ++la+      G+   ++r+Wd
  CDO68485.1 630 VH--VGDFAWSTDARLLAArceeanGG-PASLRVWD 662
                 46..899**********9877888888.88999998 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 8.1e-06
                 S.EEEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40  12 s.vtslafspdgawlasG.sdDgtvriW 37 
                 s + +++fs+dg ++a G   Dg+vr+W
  CDO68485.1 824 SrIQDIRFSHDGELIA-GlRVDGKVRVW 850
                 15999*********96.*657******* PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00034
                 EEEEEEETTSSE.EEEE.ETTSEEEEE CS
        WD40  13 vtslafspdgaw.lasG.sdDgtvriW 37 
                 ++ ++fsp g   l +  ++Dgt+riW
  CDO68485.1 868 ISRFRFSPGGEHtL-ATeMMDGTIRIW 893
                 88899*******55.45578******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 7564.80
//
Query:       CDO68486.1  [L=332]
Description: hypothetical protein BN946_scf184499.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-29  100.7   0.0    9.7e-29  100.2   0.0    1.2  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    2.1e-18   66.5   0.0    4.7e-18   65.4   0.0    1.6  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    9.5e-06   25.8   0.0    8.7e-05   22.7   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
       0.21   11.8   0.0       0.39   10.9   0.0    1.5  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   2.2e-32   9.7e-29       1     103 [.     195     299 ..     195     304 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 2.2e-32
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH..HSSTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells..lkkeeth 94 
                    miagG+Gi+P++++l+++l+++++kt+ +l+++n te+d+l++ee+++l++k+p++++vv++v++ + gw+g  g+v+d+l++++l+     e++ 
     CDO68486.1 195 MIAGGSGITPMYQILEHALRDPSNKTRFTLIFANVTEKDILLKEEFDALRAKYPSTFNVVYTVDQASPGWKGPVGYVNDELVQQHLPppNLGEKAK 290
                    9**************************************************************************************99779**** PP

                    EEEECSHHH CS
  NAD_binding_1  95 vyvCGppgM 103
                    ++vCGppg 
     CDO68486.1 291 IFVCGPPGQ 299
                    ******985 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.1e-21   4.7e-18       2      98 ..      80     184 ..      79     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.1e-21
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.........ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk.........ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtl 88 
                    +kl+++e  +++t++f f+lp +++   lpv++ v+++ +          kg+ +iR+Ytpis ++  Gel +l+k+y  Gkms++++el++gd l
     CDO68486.1  80 FKLKKVEPYNHNTAKFIFELP-PDTASLLPVASCVVVKSPpdapnplldSKGKPIIRPYTPISPSDLPGELTFLIKRYDTGKMSKYIHELQPGDRL 174
                    689999***************.777788*********9876665666667899******************************************* PP

                    EEEEEE-SEE CS
  FAD_binding_6  89 eikGPlGkfe 98 
                    +ikGP+ kf 
     CDO68486.1 175 SIKGPIKKFD 184
                    ******9996 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-08   8.7e-05       1      46 [.     190     231 ..     190     253 .. 0.88
   2 ?    0.4   0.0      0.14   6.3e+02     135     146 ..     287     298 ..     275     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.9e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvres 46 
                    ++ v ++agG+Gitp++ il + l+  +    ++++ +li+++  +
     CDO68486.1 190 FDEVGMIAGGSGITPMYQILEHALRDPS----NKTRFTLIFANVTE 231
                    68899**********************9....99999999987555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                    xxxxxxxxxxxx RF
  NAD_binding_6 135 ssvgvfvCGppk 146
                    ++  +fvCGpp+
     CDO68486.1 287 EKAKIFVCGPPG 298
                    67789*****97 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.8e-05      0.39      63     118 ..     126     180 ..      85     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.8e-05
  FAD_binding_9  63 lpederpvmRtYtvraldaeaeeldidfvlHgdegpaarwAaqAqpGdelaivgPg 118
                    l+++ +p++R Yt+ +     +el+  +   ++ g  +++  + qpGd+l i gP 
     CDO68486.1 126 LDSKGKPIIRPYTPISPSDLPGELTFLIKRYDT-GKMSKYIHELQPGDRLSIKGPI 180
                    677889********9999999999876666666.********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2415.76
//
Query:       CDO68487.1  [L=360]
Description: hypothetical protein BN946_scf184499.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-59  199.8   0.0    4.2e-58  196.8   0.0    1.9  1  Pkinase      Protein kinase domain
    5.4e-25   88.1   0.0    6.9e-24   84.5   0.0    2.1  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.0   4.7e-62   4.2e-58      10     264 .]       2     288 ..       1     288 [. 0.90

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 4.7e-62
                 ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHH CS
     Pkinase  10 GsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgslseeeakkiakqi 107
                 G+fG V +a+++ tg  vA+Kki k   +    k++ rE+k+lk+++h+ni+ l +vf +  +++y+v+e++ ++ l++ll+ ++ l+++ ++ +++qi
  CDO68487.1   2 GAFGLVCSAKDQLTGSSVAIKKIMKPFSTPVLSKRTYRELKLLKHIQHENIISLSDVFISpLEDIYFVTELLGTD-LHRLLT-SRPLEKQFIQYFLYQI 98 
                 9********************************************************9985689********966.999997.689************* PP

                 HHHHHHHHHTTEE-SS-................SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHH CS
     Pkinase 108 legleylHskgiiHrDl................KpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilye 189
                 l+gl+y+Hs+g++HrDl                Kp+NiLi+e+ +lKi+DFGla+  + +  +t +v t++Y+APE++ + ++y+ +vD+Ws+G+i++e
  CDO68487.1  99 LRGLKYVHSAGVVHRDLvgssfvktrtalifpqKPSNILINENCDLKICDFGLARIQDPQ--MTGYVSTRYYRAPEIMlTWQKYDVAVDIWSAGCIFAE 195
                 ****************99999999999999999**********************98885..7**************9899****************** PP

                 HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 190 lltgkppfsgekgkekvekeldqlekilkilg....etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqhpy 263
                 +l gkp+f+   gk+    +++q+  i+++lg    ++ ++++ ++++                     ++ a+dll+k+l  dp+kR+ta+e l+h+y
  CDO68487.1 196 MLEGKPLFP---GKD----HVHQFSIITELLGtppeDVIQTIASENTLrfvqslpkrervpfseklhcnDPVAIDLLEKMLVFDPRKRITATESLAHEY 287
                 *********...444....56666666666665544333333333333667777999999999999**999**************************99 PP

                 G CS
     Pkinase 264 l 264
                 +
  CDO68487.1 288 V 288
                 6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   7.7e-28   6.9e-24      10     211 ..       2     208 ..       1     255 [. 0.80

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 7.7e-28
                  ESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHH CS
  Pkinase_Tyr  10 GafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkekekltlkdl 105
                  GafG V++++ +     +  +Va+K++ k  +t   +++ ++e+k++k+++h+ni++l  v +   e +++vte++   dL+  L+++   +l+ + +
   CDO68487.1   2 GAFGLVCSAKDQ----LTGSSVAIKKImKPFSTPVLSKRTYRELKLLKHIQHENIISLSDVFIsPLEDIYFVTELLG-TDLHRLLTSR---PLEKQFI 91 
                  999999999888....88999***9874777788889************************9977788******985.69*****998...9999999 PP

                  HHHHHHHHHHHHHHHHTTEEEST-SG......G..........GEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHH.SEEEHHH CS
  Pkinase_Tyr 106 lsfalqvAkGmeyLeskklvHrdlaa......r..........NvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslke.kkftsks 186
                    f +q+ +G++y++s  +vHrdl        r          N+L++en   ki+DfGLar    d ++   ++      + apE++ + +k+ ++ 
   CDO68487.1  92 QYFLYQILRGLKYVHSAGVVHRDLVGssfvktRtalifpqkpsNILINENCDLKICDFGLARIQ--DPQM---TGYVSTRYYRAPEIMLTwQKYDVAV 184
                  9**********************97422222223334444444899999*************77..3333...3333444567***9766267***** PP

                  HHHHHHHHHHHHHTTSSGTTTTSHH CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespypglkn 211
                  D+Ws G +  E+++ g+  +pg ++
   CDO68487.1 185 DIWSAGCIFAEMLE-GKPLFPGKDH 208
                  ************99.8777766644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2396.22
//
Query:       CDO68488.1  [L=334]
Description: hypothetical protein BN946_scf184499.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-11   43.0   0.0    6.2e-11   42.9   0.0    1.2  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   3.5e-15   6.2e-11       1      72 [.       4     119 ..       4     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.5e-15
                 EEEE-.-CCC.--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT............................................HHHHHHHHHHHH CS
                 xxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxxxxx RF
         PHP   1 dlHvH.teys.lldgalsieelvkkakelglkaiaiTDhgnlf............................................gyvefykaakkk 53 
                 ++H+H ++++    g+l  e++v +a+++g++++++T+h++++                                            +++ +++++k+k
  CDO68488.1   4 SHHSHsGQFCkHAAGTL--EDVVLAAIRQGFETFGLTEHVPRHraadlypeevpklflstilsghalmlwvypqegmpldalraqfaAFLVEAHRLKEK 100
                 59***999996333666..******************************************************************************** PP

                 TTTTSEEEEEEE....... CS
                 xxxxxxxxxxxxxxxxxxx RF
         PHP  54 ykagikpiiGleayvadds 72 
                 y+++i+++iG+e   ++ +
  CDO68488.1 101 YADRITLLIGAETEYISPT 119
                 ************7666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2239.47
//
Query:       CDO68489.1  [L=568]
Description: hypothetical protein BN946_scf184499.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3760.20
//
Query:       CDO68490.1  [L=505]
Description: hypothetical protein BN946_scf184499.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-47  158.9  31.8    2.5e-10   40.7   0.1    8.4  9  Sel1      Sel1 repeat
  ------ inclusion threshold ------
       0.11   12.7   0.5       0.64   10.3   0.0    2.3  2  TPR_5     Tetratrico peptide repeat
       0.69   10.6  25.0        1.7    9.3   0.5    5.1  5  TPR_16    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.9   1.7e+04       3      18 ..      51      62 ..      50      66 .. 0.64
   2 ?    0.3   0.0      0.21   1.3e+03      23      38 .]     173     188 ..     167     188 .. 0.86
   3 !   22.9   0.0   1.6e-08   9.8e-05       3      38 .]     191     227 ..     190     227 .. 0.92
   4 !   24.4   1.2   5.5e-09   3.3e-05       1      38 []     228     263 ..     228     263 .. 0.94
   5 !   19.9   0.0   1.5e-07   0.00087       2      36 ..     265     298 ..     264     299 .. 0.91
   6 !   17.0   0.3   1.2e-06    0.0072       1      38 []     304     341 ..     304     341 .. 0.91
   7 !   36.5   0.3   8.8e-13   5.3e-09       2      38 .]     343     378 ..     342     378 .. 0.95
   8 !   15.1   0.1   4.8e-06     0.028       3      37 ..     381     415 ..     379     416 .. 0.85
   9 !   40.7   0.1   4.2e-14   2.5e-10       2      38 .]     418     452 ..     417     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.9
        Sel1  3 AmyrLGmfylylnGlg 18
                ++y+ +     +nG+g
  CDO68490.1 51 SQYDDA--S--YNGDG 62
                788888..7..66654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
        Sel1  23 pekAiewyekAAeqGd 38 
                 +++A+ ++++ A++G+
  CDO68490.1 173 IHEAMSLLKRLADRGH 188
                 5789***********8 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 1.6e-08
        Sel1   3 AmyrLGmfylylnGlg.vpk..DpekAiewyekAAeqGd 38 
                 A+y L+   +y nG g  +   D ++A+ ++ +AA++G+
  CDO68490.1 191 AQYFLA--DCYANGIGtHKNrqDFDRAFPLFVLAAKHGH 227
                 9*****..999****97666899***************9 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 5.5e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 ++A+yr G+ +  +nG g  +   kA+++y+kAA++G+
  CDO68490.1 228 PDAAYRAGTCC--ENGWGCRREAAKAVQFYKKAAAAGH 263
                 68******666..************************8 PP

  == domain 5  score: 19.9 bits;  conditional E-value: 1.5e-07
        Sel1   2 eAmyrLGmfylylnGl.gvpkDpekAiewyekAAeq 36 
                  A+yrLG  +  lnG  g+ k p++++++++++Ae+
  CDO68490.1 265 GALYRLGIAE--LNGElGLSKSPKEGVKYLKRSAEN 298
                 59*****666..****88****************96 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 1.2e-06
        Sel1   1 aeAmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqGd 38 
                 ++A++ L+  +l++ G    +  D+e A e++ +AAe+G+
  CDO68490.1 304 PHALHELA--LLHERGIdNvLFVDYEYAAELLAQAAELGY 341
                 689*****..999****636999***************96 PP

  == domain 7  score: 36.5 bits;  conditional E-value: 8.8e-13
        Sel1   2 eAmyrLGmfylylnGl.gvpkDpekAiewyekAAeqGd 38 
                  ++yrLG  ++y++G+ g p+Dp + i++y  AA+qG+
  CDO68490.1 343 PSAYRLG--ECYEYGKmGCPQDPALSIHYYNIAAQQGH 378
                 69*****..*******77*******************9 PP

  == domain 8  score: 15.1 bits;  conditional E-value: 4.8e-06
        Sel1   3 AmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqG 37 
                 A+++L    +yl G  g +p+   +A+ w +kAAe+G
  CDO68490.1 381 ACFALT--AWYLVGSpGvLPQSDTEAYLWARKAAEAG 415
                 677777..455****998999**************99 PP

  == domain 9  score: 40.7 bits;  conditional E-value: 4.2e-14
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  Amy++G  y+++ G g++++ ++Ai+wy++AAeqGd
  CDO68490.1 418 KAMYAVG--YFLEVGIGTEPNMQEAIQWYKRAAEQGD 452
                 6******..777************************7 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011      0.64      16      80 ..     247     311 ..     228     320 .. 0.89
   2 ?   -0.5   0.1      0.24   1.4e+03      18      35 ..     438     455 ..     432     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
       TPR_5  16 hedkavplYrraLaeGLagarrrratiqLassLRnlGeaeealaLLraeleapsdelddalaafl 80 
                 + +kav+ Y++a a+G  ga  r     L   L     ++e+++ L+  +e+ + e+  al+ ++
  CDO68490.1 247 EAAKAVQFYKKAAAAGHPGALYRLGIAELNGELGLSKSPKEGVKYLKRSAENATAEFPHALHELA 311
                 4689*****************************************************99998654 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.24
       TPR_5  18 dkavplYrraLaeGLaga 35 
                 ++a++ Y+ra ++G + a
  CDO68490.1 438 QEAIQWYKRAAEQGDKRA 455
                 789*******99996554 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00029       1.7      15      67 ..     175     230 ..     168     231 .. 0.85
   2 ?    5.5   1.6    0.0045        27      10      63 ..     209     261 ..     204     266 .. 0.84
   3 ?    2.1   1.2     0.054   3.2e+02      15      48 ..     247     283 ..     243     302 .. 0.59
   4 ?    2.2   3.1     0.051     3e+02      12      44 ..     325     352 ..     325     380 .. 0.91
   5 ?    8.2   0.9   0.00067         4      19      65 ..     404     452 ..     403     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00029
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrq.......grlaeAa.alyraalraapda 67 
                 +A  +l+++ +r+     +  A+++l+d+++         +++++A   +++aa    pda
  CDO68490.1 175 EAMSLLKRLADRG-----HMPAQYFLADCYANGigthknrQDFDRAFpLFVLAAKHGHPDA 230
                 79999********.....*************999999999999999977777776666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0045
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrq....grlaeAaalyraalra 63 
                 ++d+d+A +++  a k +     +++A++  g ++        + a+A+++y++a++a
  CDO68490.1 209 RQDFDRAFPLFVLAAKHG-----HPDAAYRAGTCCENGwgcrREAAKAVQFYKKAAAA 261
                 688999999996666666.....999***************9************8744 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.054
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrq.....g 48 
                 +Aa+a + + k+++    ++ Al+ lg a l       +
  CDO68490.1 247 EAAKAVQFYKKAAA--AGHPGALYRLGIAELNGelglsK 283
                 45555533333332..33899999999998876555555 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.051
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaa 44 
                 dy+ Aa++l +a +++      a +++ lg+++
  CDO68490.1 325 DYEYAAELLAQAAELG-----YAPSAYRLGECY 352
                 6888************.....999*******98 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00067
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrq....grlaeAaalyraalraap 65 
                 a+ +a+k++  +   + A+++ g  + +     ++++eA+++y++a++++ 
  CDO68490.1 404 AYLWARKAA--EAGLVKAMYAVGYFLEVGigtePNMQEAIQWYKRAAEQGD 452
                 666777777..3558999999999999999999*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3539.00
//
Query:       CDO68491.1  [L=363]
Description: hypothetical protein BN946_scf184499.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2466.35
//
Query:       CDO68492.1  [L=1193]
Description: hypothetical protein BN946_scf184499.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-22   78.6   0.0      8e-22   77.9   0.0    1.3  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
       0.11   10.8   0.4        1.3    7.2   0.0    2.0  2  Nop14     Nop14-like family


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   8.9e-26     8e-22      59     320 ..     299     590 ..     259     594 .. 0.71

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 8.9e-26
     Plavaka  59 lgnpdfadeldyaPereytde...kkg.....ervysemmtgdwaweqqie.ek.p.tegat....lvpvilssDKTtlsvftgnkeayPvYlsiGnip 142
                 +   +++  ++y+P+r++ +     +g     e v  e++t +   + ++e ++ p + g t    ++ ++ +sD T+l    gn + +P Y+  Gn +
  CDO68492.1 299 VCASELSAGFHYTPYRKLWQPpsgPDGqipllETVHGELYTSQAFLDAHLElQRsPlEPGCTlpraVIACMPWSDSTHLAEY-GNASLWPTYMLFGNQT 396
                 4445677778888887776442222231112234555555555555555443333444455511116777889*******99.**************** PP

     Plavaka 143 kevrrkasrnavvllayLpi.........pklkkikkskefrklfkrqlfHaclarilep.LkeagkkgvvmtcadghvrrvipilaayiaDypEqvlv 231
                 k  r ++s+na+  +ay+p          +k  ++++ ++  ++++r+l+    + +l+    +a ++g+v++c dg++rr +p +  y aDypE+   
  CDO68492.1 397 KYERGRPSSNACHHVAYIPKlpsdiedliNKHVHVDSIDKILTHCRRELMQGVWRVMLSDgFVHAYRHGIVVKCYDGVTRRLYPRFFTYSADYPEKKDA 495
                 *******************888888877777777788888888899********999975379********************************9765 PP

     Plavaka 232 acivqgwCpkctak.kkelgdl..eeselrtreetlelleeaade.lkklwkeyglkgviepFwedlp..radihelltpDlLHqlikgvfkdHl 320
                  + v         + + +++++  + +  r re + e+ +  a++  ++l+k+  l+++++ F e+l     + hel+ pD LH++  gv+k+ +
  CDO68492.1 496 ISAVGMARDMASRTrNARVDSAdrRYKVNRAREFIYEQGRGLASKaVEDLLKAESLVPTVNVFSERLSplLPNFHELFVPDFLHEWELGVWKNLM 590
                 5555443333333303333332112234445555444444444437899*****************97334599******************644 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1    0.0073        65     672     767 ..     622     732 ..     587     743 .. 0.66
   2 ?    7.2   0.0   0.00014       1.3      66     139 ..     779     855 ..     778     888 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.0073
       Nop14 672 elkeleekskkekkqrklslsdllk......eesskeeseqlklsllstalsl..lekfaelyseks.....afveifepilkllkklk...lkkkklp 754
                 ++++++++ ++ k+ +  +++d l+      e+  +++ ++l l+ll  + s+  l+k+ +++++++     af+ if+++l+ +k+++    k+ +lp
  CDO68492.1 622 TIRRMSRNMSEMKQMAARDFEDALQsfipviESLLQQAHNDLVLDLLWDTASVhaLHKL-RMHTDTTvnvvtAFFCIFTNTLRRFKAITcaaYKTAELP 719
                 45555555555555566677777777777776777777788888777655543113332.333333334444**************9999999999999 PP

       Nop14 755 eelqekleellak 767
                 +e+q ++ + ++k
  CDO68492.1 720 KEVQARVRRQAQK 732
                 9999999876554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00014
       Nop14  66 RfGEnDptmtpeekmleRfarEk.qrkakkkslFnLe..ddeeeeLtHyGqsLselddfddedl.edddd.deeeeegk 139
                 R G  D+  t+    ++R a+E+  r +kk+    L   +  e++L H+G+ Ls l+d ++  + e++ d d + ++  
  CDO68492.1 779 RVGTLDSYTTQIGELAHRIAKERfARTSKKAFTTQLAkiERRETHLKHMGHGLSHLEDANQP-IsEPAADaDLSGDS-V 855
                 7788888888889999*******5555555556677777666779***********999997.55555554333333.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 7958.34
//
Query:       CDO68493.1  [L=780]
Description: hypothetical protein BN946_scf184499.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-29  101.7   0.0    8.7e-19   67.6   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.3e-12   2.3e-08     114     226 ..     257     370 ..     173     375 .. 0.71
   2 !   67.6   0.0   4.9e-23   8.7e-19     284     404 ..     371     587 ..     364     591 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.3e-12
  Pkinase_fungal 114 lDptiv.....tesdgrrsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrdaerk.sEaelLkkaeergv.eg 201
                     +D ti+     t++ g++  +i    ++++e++   ++++   + + R Tt++r++k ++   ++v+K s  d +r+ +EaelL +++e+g   g
      CDO68493.1 257 YDRTITpiepcTQPLGKPTWTI----KTQDETYSGASIIF-LGDPWARRTTVFRIKKGDRG--SVVIKESYFDCKRRfEEAELLTRIHEHGFlPG 344
                     6777777666555667777777....33444444333333.344689**********7777..8*************************99769* PP

  Pkinase_fungal 202 varlvahedveekdddi.aeiRkgld 226
                     v+r+++ edv++ +d i   +++g  
      CDO68493.1 345 VVRYISAEDVKNGEDPIiLTAKDGSM 370
                     ***********777777688887755 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 4.9e-23
  Pkinase_fungal 284 nrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilit...........................dskkegerkg 351
                     ++  rr+v+ ++G  ++ a+s+ +ll+a++Da++ hr L ++ ++LHrD S+ N+l++                            +  +++ + 
      CDO68493.1 371 KKRKRRIVLADIGYDLTLAKSVNDLLKAIYDALEVHRTLARDRRVLHRDMSIFNLLMYptlarcpqgrysqnfppliddildgalRTPGQRKARC 465
                     56679*****************************************************9******999999999999888877664455589999 PP

  Pkinase_fungal 352 lLiDLDlakelsddssesga...rertGTleFmaievlkgeeHsyr................................................. 394
                     l+iDLD a +l + +++  +   r+rtGT++++a +v  g   + r                                                 
      CDO68493.1 466 LIIDLDNAASLVEAQANVIPeelRCRTGTPAYIARNVAGGALYTSRatlswplkmpqlsdtakdlyvkaygearyrryndsantvhggvppeetv 560
                     ***********985555422556************999977788888889999999999999999999999999999999999999999999999 PP

  Pkinase_fungal 395 .................hDLESffyvl 404
                                       D ES+f+ +
      CDO68493.1 561 fetmeradgmpfyhrweYDAESVFWTM 587
                     999999999999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5426.79
//
Query:       CDO68494.1  [L=731]
Description: hypothetical protein BN946_scf184499.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   13.5   0.3       0.29   11.1   0.0    2.4  3  F-box     F-box domain


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.6e-05      0.29       9      32 ..      88     126 ..      83     127 .. 0.75
   2 ?   -1.8   0.0      0.17   3.1e+03      23      34 ..     171     182 ..     159     184 .. 0.81
   3 ?   -2.6   0.0      0.32   5.8e+03       1      10 [.     284     293 ..     284     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.6e-05
                 H...............HHHHHHHTS-HHHHHHHCTT-HH CS
       F-box   9 e...............vlrhILerLplsdllalrrVSkg 32 
                 +               ++ +IL  L+  d+  lr+VS  
  CDO68494.1  88 AsksvdrsrpilcddvIIDNILAELDVQDIAKLRQVSQQ 126
                 55555555555555579********************76 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.17
                 HHHHCTT-HHHH CS
       F-box  23 llalrrVSkgwr 34 
                 l+++++  kgw+
  CDO68494.1 171 LVRCASLAKGWN 182
                 89*********8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.32
                 -HHHHS-HHH CS
       F-box   1 ftlsrLPsev 10 
                 f+  rLP+++
  CDO68494.1 284 FNVNRLPDDL 293
                 567899*995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 5126.65
//
Query:       CDO68495.1  [L=563]
Description: hypothetical protein BN946_scf184499.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.39   11.0   0.0    1.5  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.2e-05      0.39       5     102 ..       9     113 ..       7     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.2e-05
                 EEEEEEESSSSSSTTSSCEEEEEEEE.ECEEEEEE-.SC..SSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEE....EEEEEEEEGHHHHTTH CS
          C2   5 vtvieAknLpnkdkkgssdpyvkvsl.dgkqkakTr.vi..knslnPvWnekftfevaeleeakLeveVfdndrlskdd....fiGkveiplstllsge 95 
                 vtvi+ ++L      +s  p vk+++ dg++ +    v+  ++  n  ++  + ++   + +++L ++Vf++++++k++    ++G +++pl+++ ++ 
  CDO68495.1   9 VTVIRTRGLSFVRPDKSWRPIVKITVvDGSHEYVLPeVVlgSDGQNSDFKSFVPVHGV-NRSTSLVLQVFHRSQTKKKHrkptLVGSAKLPLAEIINKY 106
                 7888888886666677888888888884444444433444666667777555555444.49**********9995444457779**********99998 PP

                 HHHEEEE CS
          C2  96 eaegwyp 102
                 +  ++ p
  CDO68495.1 107 PLPHSRP 113
                 8887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3721.25
//
Query:       CDO68496.1  [L=379]
Description: hypothetical protein BN946_scf184499.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-21   75.6   0.1    3.1e-21   74.9   0.1    1.3  1  ubiquitin     Ubiquitin family
    7.2e-12   45.0   0.1    1.8e-11   43.7   0.1    1.7  1  UBA           UBA/TS-N domain
    4.7e-11   42.4   0.1    7.9e-11   41.6   0.1    1.3  1  Rad60-SLD     Ubiquitin-2 like Rad60 SUMO-like
    2.3e-06   28.1   0.0    4.2e-06   27.3   0.0    1.4  1  DUF2407       DUF2407 ubiquitin-like domain
     0.0011   19.0   0.0     0.0028   17.7   0.0    1.6  1  Rad60-SLD_2   Ubiquitin-2 like Rad60 SUMO-like
      0.002   18.0   0.0     0.0038   17.1   0.0    1.3  1  TBK1_ULD      TANK binding kinase 1 ubiquitin-like domain
  ------ inclusion threshold ------
       0.01   15.8   0.4        1.1    9.4   0.1    2.3  2  Ubiquitin_4   Ubiquitin-like domain
      0.017   14.8   0.0      0.034   13.8   0.0    1.4  1  Phage_tail_X  Phage Tail Protein X
      0.034   14.5   0.0      0.067   13.6   0.0    1.4  1  Ubiquitin_5   Ubiquitin-like domain
      0.036   14.5   0.2       0.11   13.0   0.2    1.7  1  Ubiquitin_2   Ubiquitin-like domain
      0.037   14.2   1.9       0.71   10.1   0.8    2.6  2  RPN13_C       UCH-binding domain
       0.15   12.1   0.0       0.29   11.1   0.0    1.4  1  HOIP-UBA      HOIP UBA domain pair
       0.18   11.8   9.5        4.7    7.2   0.2    2.7  2  STI1          STI1 domain
        0.2   11.6   3.4       0.86    9.6   3.4    2.0  1  GerD          Spore germination GerD central core domain
        6.8    6.5   5.7        2.7    7.8   0.0    2.7  3  CUE           CUE domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1   2.6e-24   3.1e-21       1      68 [.      17      84 ..      17      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.6e-24
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEE CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlv 68
                i+vk  +  k+ ++++ ++tv+elK++iaek ++pa++qrLiysG+vL+de  l+ y+iq+g+t+h+v
  CDO68496.1 17 INVKGPSELKLQITISTDKTVSELKQAIAEKSDVPADRQRLIYSGRVLKDEDALSTYKIQSGHTIHMV 84
                677876666999*******************************************************9 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   1.5e-14   1.8e-11       5      37 .]     340     373 ..     336     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.5e-14
                 HHHHHHHTTS-HH.HHHHHHHHTTTSHHHHHHHH CS
         UBA   5 aiqrLveMGFdre.evveALratgnNeErAveyL 37 
                 ++q+L++MGF+ + ++v+AL atg+N+++A+ey+
  CDO68496.1 340 QLQQLQDMGFTNAsQNVRALLATGGNVHAAIEYI 373
                 8********************************8 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   6.6e-14   7.9e-11       1      71 [.      15      84 ..      15      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 6.6e-14
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEE CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvv 71
                i+i +kg++  +++i ++ + tvs+L++a ++k ++p+ +++rLi+ G+ L++++ +  ++i+ g ti++v
  CDO68496.1 15 ISINVKGPSELKLQITISTDKTVSELKQAIAEKSDVPA-DRQRLIYSGRVLKDEDALSTYKIQSGHTIHMV 84
                6899**********************************.******************************87 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.5e-09   4.2e-06      14      70 ..      25      79 ..      16     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.5e-09
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpee 70
                l+L+i+  +  tv++Lkq+i e+   ++   r rLIy+Gr+L+d+ +l++   +  +
  CDO68496.1 25 LKLQITISTDKTVSELKQAIAEKS--DVPADRQRLIYSGRVLKDEDALSTYKIQSGH 79
                8899998889************98..9999999***************986544433 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.3e-06    0.0028      20      91 ..      31      89 ..      26     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.3e-06
                 EETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---S CS
  Rad60-SLD_2 20 fsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenl 91
                  s  +tv+elk+++      +k+  p++    +li++G++L++  +l+ +++++g +      +H+v  ++ 
   CDO68496.1 31 ISTDKTVSELKQAIA-----EKSDVPADR--QRLIYSGRVLKDEDALSTYKIQSGHT------IHMVKGAAR 89
                 566789999999986.....455556554..49**********************99......566654444 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.2e-06    0.0038      15      56 ..      27      68 ..      23      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-06
    TBK1_ULD 15 hkiYihpyntvaifqeevakqTkiaaekQellfeghrlllep 56
                ++i i++ +tv+++ +++a++ +++a++Q l++ g+ l+ e+
  CDO68496.1 27 LQITISTDKTVSELKQAIAEKSDVPADRQRLIYSGRVLKDED 68
                678899*****************************9987555 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0009       1.1       3      36 ..      17      50 ..      15      58 .. 0.81
   2 ?    4.4   0.0     0.031        37      61      87 ..      60      85 ..      56      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0009
  Ubiquitin_4  3 vtvkkldgeslevvvkqnatvkdLkkaierkvel 36
                 ++vk  ++ +l++ ++   tv++Lk+ai +k + 
   CDO68496.1 17 INVKGPSELKLQITISTDKTVSELKQAIAEKSDV 50
                 6777778889******************998765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.031
  Ubiquitin_4 61 egekLkddkaklkeygirnkselsFvk 87
                  g ++++d+++l++y i+++ +++ vk
   CDO68496.1 60 SG-RVLKDEDALSTYKIQSGHTIHMVK 85
                 44.56688999************9887 PP

>> Phage_tail_X  Phage Tail Protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-05     0.034      25      43 ..     168     186 ..     165     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
                   THHHHHHHSTTTTTT-S-- CS
  Phage_tail_X  25 vveavleaNPgLAelgpvL 43 
                   vve++++ NP LA +gp  
    CDO68496.1 168 VVEQIIASNPQLASMGPQV 186
                   8***************965 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.6e-05     0.067      34      85 ..      27      78 ..      16      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.6e-05
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknn 85
                   + +  d t++el ++iae+ ++  ++ +li++g+ l+ +  L +  ++  
   CDO68496.1 27 LQITISTDKTVSELKQAIAEKSDVPADRQRLIYSGRVLKDEDALSTYKIQSG 78
                 3444555667889****************************99998777655 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   8.8e-05      0.11      17      80 ..      28      83 ..      15      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.8e-05
                 EEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 17 errfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                 ++ +s + t++elK+ +     ++++ +rL +          ++ +d+  L++Y++++g +ih 
   CDO68496.1 28 QITISTDKTVSELKQAIAEKSDVPADRQRLIYS--------GRVLKDEDALSTYKIQSGHTIHM 83
                 678999************************998........666779999*************6 PP

>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.008       9.5      53      73 ..     141     161 ..     138     164 .. 0.83
   2 ?   10.1   0.8   0.00059      0.71      28      73 ..     157     201 ..     156     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.008
     RPN13_C  53 ateeelretlrSPqfrqalss 73 
                 ++++   ++l+SPqf q++ss
  CDO68496.1 141 NDPNMFHSMLNSPQFLQQMSS 161
                 567788999**********98 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00059
     RPN13_C  28 ealspllsdpevveeLashLPeegeateeelretlrSPqfrqalss 73 
                 +++s+++s+p+vve++++  P+   +   ++re+ rS  frq +s+
  CDO68496.1 157 QQMSSVMSNPDVVEQIIASNPQ-LASMGPQVREMFRSERFRQMMSN 201
                 6799******************.888999*************9986 PP

>> HOIP-UBA  HOIP UBA domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.29     101     134 ..     338     371 ..     333     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
    HOIP-UBA 101 rkKvkelaslgffdreevveaLrqsgGdvegAlv 134
                 + ++++l+++gf ++++ v aL ++gG+v++A+ 
  CDO68496.1 338 QVQLQQLQDMGFTNASQNVRALLATGGNVHAAIE 371
                 56799***************************86 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.1    0.0047       5.6      16      46 ..     148     179 ..     139     182 .. 0.87
   2 ?    7.2   0.2    0.0039       4.7      13      31 ..     194     212 ..     183     225 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0047
        STI1  16 ellsDPefvakleeiqsNPqalqqym.sDpri 46 
                  +l+ P+f + +  ++sNP  ++q + s+p+ 
  CDO68496.1 148 SMLNSPQFLQQMSSVMSNPDVVEQIIaSNPQL 179
                 58999*******************99999976 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0039
        STI1  13 etrellsDPefvakleeiq 31 
                 + r+++s+Pe   ++ +++
  CDO68496.1 194 RFRQMMSNPETLRMMLQMS 212
                 4455555555555555554 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00072      0.86      45     100 ..     141     193 ..     131     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00072
        GerD  45 enekllkdLmkDpeYqkmlleilkdpemekqllellkskeyrkqlekviqetlesP 100
                 +  +++ ++++ p++ +++ +++ +p++ +q++    s+     +   + e++ s 
  CDO68496.1 141 NDPNMFHSMLNSPQFLQQMSSVMSNPDVVEQII---ASNPQLASMGPQVREMFRSE 193
                 55678999*******************987764...45555555555555555554 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       6.3   7.6e+03       7      12 ..     185     190 ..     185     190 .. 0.92
   2 ?    0.2   0.8      0.52   6.2e+02       3      11 ..     339     347 ..     337     347 .. 0.85
   3 ?    7.8   0.0    0.0022       2.7      21      41 ..     357     376 ..     354     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.3
                 HHHHHS CS
         CUE   7 tLkemF 12 
                 +++emF
  CDO68496.1 185 QVREMF 190
                 79***9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.52
                 HHHHHHHHH CS
         CUE   3 qmletLkem 11 
                  +l++L++m
  CDO68496.1 339 VQLQQLQDM 347
                 589*****9 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0022
                 HHHHHHCTTTHHHHHHHHHHC CS
         CUE  21 ravLrasngnvEatinaLLeg 41 
                 ra L a++gnv a+i+++L+g
  CDO68496.1 357 RALL-ATGGNVHAAIEYILNG 376
                 5555.**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2716.50
//
Query:       CDO68497.1  [L=478]
Description: hypothetical protein BN946_scf184499.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-71  238.7   0.0      1e-70  238.3   0.0    1.1  1  Dus           Dihydrouridine synthase (Dus)
    0.00021   21.1   0.1      0.036   13.8   0.1    2.3  2  SOR_SNZ       SOR/SNZ family
    0.00043   19.8   0.0    0.00078   18.9   0.0    1.4  1  NMO           Nitronate monooxygenase
     0.0035   16.7   0.0     0.0058   16.0   0.0    1.2  1  ThiG          Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
       0.01   14.8   0.0      0.017   14.1   0.0    1.2  1  IMPDH         IMP dehydrogenase / GMP reductase domain
      0.018   14.2   0.0       0.04   13.1   0.0    1.5  2  DHO_dh        Dihydroorotate dehydrogenase
      0.098   12.1   0.0       0.23   10.9   0.0    1.6  2  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   0.0     4e-74     1e-70       1     224 [.      28     257 ..      28     286 .. 0.92

  Alignments for each domain:
  == domain 1  score: 238.3 bits;  conditional E-value: 4e-74
                 EE---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT........SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTT CS
         Dus   1 llaPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee........tplavQlggsdpallaeaAklvadlgadeIdlNvGCPs 91 
                 ++aPm+++++l++R+l+r++ga+  v+t+m++ak +++  ++ +r+ +++  +        +pl+vQ+++++++ l++ Akl ++ ++d++d+N+GCP+
  CDO68497.1  28 IVAPMVDQSELAWRKLSRRYGAQ-VVYTPMINAKMYAEGVRKPYREQNFDTVHgeeggpedRPLIVQFCANNVDHLLTSAKLLEP-YCDAVDINLGCPQ 124
                 58*********************.*************988777666555544444789999************************.************* PP

                 EEETTEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-C..G--CHHHHHHHHH-SS-EEE CS
         Dus  92 kkvtrggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyeg..tadweaIkevkqavsipvia 188
                 + + rg++G+ L  ++dl+++++++++k+++iPvt+k+r++     e+++e+ak++e+aGaq lt HgRtr+q+ +    adwe+I++vk+avs+pvia
  CDO68497.1 125 DIARRGHYGSYLQDEWDLIYEMINTLHKNLSIPVTAKFRVFPT--VEKTVEYAKMLERAGAQILTCHGRTREQRGHRsgLADWEKIRAVKEAVSVPVIA 221
                 ****************************************987..8899************************977666******************** PP

                 ESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 189 NGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                 NG+I    d++++l+ tGad+vm ++g+l+nP++f 
  CDO68497.1 222 NGNILFYGDIERCLAATGADAVMSAEGNLYNPAIFM 257
                 **********************************96 PP

>> SOR_SNZ  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0042        11      60      85 ..     145     170 ..     141     172 .. 0.88
   2 !   13.8   0.1   1.4e-05     0.036      22      80 ..     171     226 ..     167     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0042
                 HHHHHHHHH-SS-EEEEEETT-HHHH CS
     SOR_SNZ  60 klikeikeavsipvmakvriGhfvea 85 
                 ++i+ +++ +sipv ak r+  +ve 
  CDO68497.1 145 EMINTLHKNLSIPVTAKFRVFPTVEK 170
                 799****************9888875 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.4e-05
                 SHHHHHHHHHHT-SEEEE-SS-HHHHHHH-S------HHHHHHHHHH-SS-EEEEEETT CS
     SOR_SNZ  22 naeqakiaeeaGavavmalervpadirkeggvarmsdpklikeikeavsipvmakvriG 80 
                 ++e ak+ e+aGa  +    r  +   ++g  + ++d ++i+ +keavs+pv+a   i 
  CDO68497.1 171 TVEYAKMLERAGAQILTCHGRTRE---QRGHRSGLADWEKIRAVKEAVSVPVIANGNIL 226
                 7899*********98888887766...467778899******************98775 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     3e-07   0.00078     144     220 ..     170     244 ..     130     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3e-07
         NMO 144 ssvkearkvearGaDalivqGp..eaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLa.lGAsgvq 220
                  +v+ a+++e++Ga +l   G   e+ Gh+     +     + +  v++av++PviA G i    +++  La  GA +v 
  CDO68497.1 170 KTVEYAKMLERAGAQILTCHGRtrEQRGHRS--GLA---DWEKIRAVKEAVSVPVIANGNILFYGDIERCLAaTGADAVM 244
                 58999****************6337789998..444...45567899*********************999626999985 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-06    0.0058     108     203 ..     145     245 ..     136     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-06
                 -HHHHH.HHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSS...TTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHH.TT-SEE CS
        ThiG 108 dvvetl.kaaeiLvkeGFevlpYvsdDlvlarrleevGcaavmPlaap...iGsglGllnkealkiiieeakvPvivDAGigspsdaaqame.lGadav 201
                 ++++tl k   i v+  F v+p v++ + +a+ le +G++ +   +      G   Gl++ e+++ + e ++vPvi +  i    d+   +   Gadav
  CDO68497.1 145 EMINTLhKNLSIPVTAKFRVFPTVEKTVEYAKMLERAGAQILTCHGRTreqRGHRSGLADWEKIRAVKEAVSVPVIANGNILFYGDIERCLAaTGADAV 243
                 55555424556778889**************************9996422279************************9999999888888752699999 PP

                 EE CS
        ThiG 202 ll 203
                 + 
  CDO68497.1 244 MS 245
                 85 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.6e-06     0.017     200     234 ..     209     244 ..     188     250 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.6e-06
                 HHHHCTCT-EEEEES---SHHHHHHHHHT.T-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
       IMPDH 200 aeaakkagvpviaDGGikysgdivkAlaa.Gadavm 234
                  ++ +   vpvia G i + gdi + laa Gadavm
  CDO68497.1 209 RAVKEAVSVPVIANGNILFYGDIERCLAAtGADAVM 244
                 44566779*******************8659****9 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05      0.04     108     184 ..      96     179 ..      66     193 .. 0.82
   2 ?   -3.1   0.0       1.3   3.4e+03     233     258 ..     207     230 ..     205     252 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
                 S.HHHHHHHHHHHHGGGESEEEEES-SCT.....CCTSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-..SSSSHHHHHHHHHH CS
      DHO_dh 108 enavddyvevvrkigpfadilelNvSsPn.....tpglrdlqekeelkaillkvvkevskvpvlvKla..Pdltdeekkdiadv 184
                  n vd +  +++ ++p+ d++ +N+ +P        ++  lq + +l +++++ ++++ ++pv +K    P + ++++ +++ +
  CDO68497.1  96 ANNVDHLLTSAKLLEPYCDAVDINLGCPQdiarrGHYGSYLQDEWDLIYEMINTLHKNLSIPVTAKFRvfPTVEKTVEYAKMLE 179
                 5789************************743222347889************************99633377777776666655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 HHHHHHHHTTT.S-EEEESS--SHHH CS
      DHO_dh 233 virelykrlkkeipiIgvGGiesgeD 258
                  ir++++ ++  +p+I+ G i    D
  CDO68497.1 207 KIRAVKEAVS--VPVIANGNILFYGD 230
                 5888888888..99999998865555 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     9e-05      0.23     148     220 ..     170     246 ..     126     252 .. 0.77
   2 ?   -3.7   0.0       2.6   6.6e+03      49      67 ..     369     387 ..     364     389 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9e-05
                   EHHHHHHHHHHTT-SEEEEEETTTT..TTSS--.-HHHHHHHHHHHSSEEEEESS--SHHHHHHHH.HTTCSEEEES CS
  His_biosynth 148 davelakkleelgageilltdidrd..GtlsGp.dleltkelaeavkipviasGGvgsledlkelk.segvdavivg 220
                   ++ve ak le++ga+ + ++   r+  G +sG  d e +++++eav++pvia G +    d+++   ++g+dav+ +
    CDO68497.1 170 KTVEYAKMLERAGAQILTCHGRTREqrGHRSGLaDWEKIRAVKEAVSVPVIANGNILFYGDIERCLaATGADAVMSA 246
                   46788888888888777777554444499999736799************************999867777998776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.6
                   EEHHHHCTTHHHHHHHHHH CS
  His_biosynth  49 vDldaakegreanldlvee 67 
                   vD++aake++ ++l+ + e
    CDO68497.1 369 VDIEAAKEKTLEELSPIDE 387
                   8999999999888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3628.30
//
Query:       CDO68498.1  [L=1012]
Description: hypothetical protein BN946_scf184499.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-25   87.9   0.0    1.4e-24   86.7   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.7e-24   86.1   0.0    3.8e-24   85.0   0.0    1.6  1  Response_reg  Response regulator receiver domain
    1.8e-24   85.7  23.0    1.8e-12   47.2   2.3    4.4  4  MHYT          Bacterial signalling protein N terminal repeat
      1e-14   54.3   0.0    3.8e-14   52.5   0.0    2.1  1  HisKA         His Kinase A (phospho-acceptor) domain
    0.00042   20.2   0.0     0.0013   18.6   0.0    1.8  1  HATPase_c_5   GHKL domain
  ------ inclusion threshold ------
      0.013   14.4   0.1       0.02   13.8   0.1    1.1  1  MFS_1_like    MFS_1 like family
       0.17   11.9   1.6       0.39   10.7   1.6    1.6  1  YbhQ          Putative inner membrane protein YbhQ
       0.25   11.6   3.7       0.25   11.6   1.7    2.0  2  BofA          SigmaK-factor processing regulatory protein Bof
        1.5    8.7  12.7        2.5    7.9  12.7    1.2  1  SPX           SPX domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   7.2e-28   1.4e-24       2     111 ..     565     675 ..     564     676 .. 0.88

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 7.2e-28
                 HHHHHHHHHHHHHHHHHHHHSTTTEE..EEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkagei..eveikase.ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwves 96 
                 de+  ++i+ nl++Na kf  ++g i   v+++  e ++lv++v D+G+Gip++ +  lfe+f q d s +r  +gtGlGlsivk lv++m G+i v+s
  CDO68498.1 565 DETYAYRILMNLLSNAQKF-CDQGYIclAVSMR--EpGQLVFQVIDTGCGIPESFRGALFEPFRQaDTSLTRPRQGTGLGLSIVKHLVQRMSGTIDVDS 660
                 778889************9.4455552244444..468***************************888888889************************* PP

                 ETTTEEEEEEEEESS CS
   HATPase_c  97 epgrGttftftlple 111
                 ++grGttft+++p +
  CDO68498.1 661 QEGRGTTFTVKIPVT 675
                 ***********9975 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   1.9e-27   3.8e-24       1     111 [.     881     996 ..     881     997 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 1.9e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT......TTSEEEEEESSTSHHHHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed......pelpviiltahseeedavealk 91 
                   vl+v+D+ ++++l  +lle+ gy eva+a+dg++a+e++++  + ++l+D++mp +dG++++++ire +       +lpvi+lta+ ++e   e+ +
    CDO68498.1 881 VLLVEDNMVNQRLGCRLLEKLGY-EVATANDGQQAIEMIRNTYFSCCLMDCQMPVLDGFQATRRIREMEasgqlpGHLPVIALTANVTQESESECKE 976
                   89*********************.*******************************************9977666566******************** PP

                   CTESEEEESSG-HHHHHHHH CS
  Response_reg  92 agaddflsKpfdpeeLlkal 111
                   ag+d fl Kp+++++L + l
    CDO68498.1 977 AGMDHFLPKPLKMADLEATL 996
                   ***************99876 PP

>> MHYT  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.36   7.2e+02      22      55 ..      12      45 ..       5      48 .. 0.80
   2 !   47.2   2.3   8.8e-16   1.8e-12       2      44 ..      62     104 ..      62     121 .. 0.93
   3 !    6.5   4.0    0.0047       9.4       3      15 ..     329     341 ..     328     358 .. 0.82
   4 !   41.2   0.9     7e-14   1.4e-10       2      57 ..     360     426 ..     360     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.36
        MHYT 22 gydpaltalSlliaivasvlAlalavrrrdtrlr 55
                ++ p l+alS li+ + ++    ++++ + tr++
  CDO68498.1 12 RWVPELIALSYLISWLGAYTSTQIMIHAKYTRSA 45
                688999**********998888777777766665 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 8.8e-16
        MHYT   2 lgIwsMHYtGMaAftlpgpigydpaltalSlliaivasvlAla 44 
                 ++IwsMH++GM+A +l ++++++++lt+lS  +a+++ ++Ala
  CDO68498.1  62 CAIWSMHFVGMLACRLDVNVRFNIPLTILSAMVAVLFTFAALA 104
                 8****************************************97 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0047
        MHYT   3 gIwsMHYtGMaAf 15 
                 +I+ MHY+G  A+
  CDO68498.1 329 AIVFMHYCGCIAM 341
                 9***********9 PP

  == domain 4  score: 41.2 bits;  conditional E-value: 7e-14
        MHYT   2 lgIwsMHYtGMaAftl.........pg.pigydpaltalSlliaivas.vlAlalavrrrdtrlrll 57 
                 +g++sMHYtGMaA+t+         pg p   +++++++++ ++++++ +lA+a++++r+++++ +l
  CDO68498.1 360 IGCCSMHYTGMAAATFytrsppssnPGyPEFLPITIIGIAVSVCVASNaMLAHAAISSRNRMAEIIL 426
                 699*************999987776577********************9************998876 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.9e-17   3.8e-14       2      66 ..     448     511 ..     447     512 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.9e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +++f++  +HE+rtPL+++ g++e+L r+ +ltee++ y+ +i++  + ++ +  ++Ld+s+++ 
  CDO68498.1 448 KQQFISIASHEIRTPLHTVNGYCELLART-PLTEEQALYVTSIQQACHAINVIAGNVLDFSKLDR 511
                 789***********************996.********************************985 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.7e-07    0.0013       7      98 ..     570     672 ..     565     675 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.7e-07
  HATPase_c_5   7 cvilgnlLdNAieacskieeekrfIrltvrekk.ksliisieNsyeg..........ek.kkle.sskskkeehGiGlksireivkkykgnlsieaed 91 
                  ++il nlL NA   c++      +I+l v+ ++ ++l++++  +  g          e  ++   s ++ ++  G+Gl+ ++++v++ +g+++++ ++
   CDO68498.1 570 YRILMNLLSNAQKFCDQ-----GYICLAVSMREpGQLVFQVIDTGCGipesfrgalfEPfRQADtSLTRPRQGTGLGLSIVKHLVQRMSGTIDVDSQE 662
                  78999*****9888765.....689999997766899999999977767666666652244444245788999********************99998 PP

  HATPase_c_5  92 g...lFtlsv 98 
                  g   +Ft+++
   CDO68498.1 663 GrgtTFTVKI 672
                  7555677776 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   9.9e-06      0.02      44     224 ..      60     437 ..      44     456 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.9e-06
  MFS_1_like  44 pltsilsppiwgvlaDrfgkrkk....vvilslllsavlflsllfippskerqeesklevsvaqdvd................................ 106
                  +++i s  ++g+la r+         + ils++++++++++ l  +p   +  e+ + +++  +++                                
  CDO68498.1  60 GFCAIWSMHFVGMLACRLDVNVRfnipLTILSAMVAVLFTFAAL-ASPYAMEAIENSTSMRTLSKWNqgffasvshlvtgrsshdleagytplqtaape 157
                 58999999999999999988777555566666666666655555.343333333333444444444456777777888888888888888888888888 PP

  MFS_1_like 107 ................................................................................................... 106
                                                                                                                    
  CDO68498.1 158 dhgddstttsmlddedienrssddeaertttrppaaeelhrsttpraalsrltsihrrfslssardrrsptnspvrpanhplqralsssgvplrthasq 256
                 88888888888888888899999999999999999999999999******************************************************* PP

  MFS_1_like 107 ...................................................aektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfG 154
                                                                     +  + ++ + + +  +++aa++v +     +++ + + ++Grq +f+
  CDO68498.1 257 estprssstettsssessftrnlsglsretrarikaqakerpvpefgwrywLQVHYRSITVSLCIRAAVWAAAIVFMHYCGCIAMVHMESHFGRQMIFS 355
                 **************************************************99999******************************************** PP

  MFS_1_like 155 svGya..ifafitGilidhysvnllp.....ysallyvlaallvisllvvlilnetekesklkvtksl.......qvllnilkn 224
                 ++  +   ++  tG++  ++++   p     y  +l  ++++ ++++++ ++ n + ++ ++  ++         + l++i+ +
  CDO68498.1 356 TIAAIgcCSMHYTGMAAATFYTRSPPssnpgYPEFL-PITIIGIAVSVC-VASNAMLAHAAISSRNRMaeiiltkRRLWRIMAE 437
                 998653356778999988888877568888853322.222222222222.2333333333333332222222333556666555 PP

>> YbhQ  Putative inner membrane protein YbhQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6    0.0002      0.39      13      64 ..      30      81 ..      20     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
        YbhQ 13 lscaqillhllvvallvlGwkskalvkvglglvvlyavvlvamlllqrhpea 64
                 + +qi++h       vl w+   l  ++ g+++++++ +v ml+ +   + 
  CDO68498.1 30 YTSTQIMIHAKYTRSAVLKWVWTFLASIAFGFCAIWSMHFVGMLACRLDVNV 81
                6789****************************************98765554 PP

>> BofA  SigmaK-factor processing regulatory protein BofA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   0.00013      0.25      15      62 ..      45      99 ..      34     106 .. 0.81
   2 ?   -2.6   0.0       3.3   6.6e+03      21      47 ..     317     343 ..     310     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
        BofA 15 kplkillkllinavlGlvlLflvN.......llgavfglhipiNlitaliagflG 62
                  lk+++++l+++++G+++++ +         l +++ + ip+ +++a++a ++ 
  CDO68498.1 45 AVLKWVWTFLASIAFGFCAIWSMHfvgmlacRLDVNVRFNIPLTILSAMVAVLFT 99
                579*********************6666544446777888999999999998875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
        BofA  21 lkllinavlGlvlLflvNllgavfglh 47 
                 ++l+i+a++ +++++++ ++g +  +h
  CDO68498.1 317 VSLCIRAAVWAAAIVFMHYCGCIAMVH 343
                 578888888888888888777666665 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  12.7    0.0013       2.5      62     163 ..     157     286 ..     118     306 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
         SPX  62 e...rtepstsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpa...................... 135
                 e   +++++ts  +de  + ++ +s +e + + +++p  ++l+rs+ +  + ++l+s +++ + ss  d++s+ n++                      
  CDO68498.1 157 EdhgDDSTTTSMLDDE--DIENRSSDDEAERTTTRPPAAEELHRSTTPRAALSRLTSIHRRFSLSSARDRRSPTNSPvrpanhplqralsssgvplrth 253
                 2333444444444443..345555555555555599999999999999999999999999999999999999999888999999999999999999999 PP

         SPX 136 .dssssssssesesssssspsllrrlfs....e 163
                  +++s+ +ss++e++sss++s++r+l +    +
  CDO68498.1 254 aSQESTPRSSSTETTSSSESSFTRNLSGlsreT 286
                 999999999999999999999999995553221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.54
# Mc/sec: 5611.33
//
Query:       CDO68499.1  [L=440]
Description: hypothetical protein BN946_scf184499.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-10   41.7   6.7    1.3e-10   41.4   6.7    1.1  1  Tetraspanin  Tetraspanin family
  ------ inclusion threshold ------
      0.012   14.9   0.2      0.022   14.0   0.2    1.4  1  FTR1         Iron permease FTR1 family


Domain annotation for each model (and alignments):
>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   6.7   1.5e-14   1.3e-10       2     226 ..     172     360 ..     171     363 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.5e-14
                  XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXX.....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   2 kyllfffnllfwligivllavG..vwlrl.khaeaalacllsesaedpailaillivvGvllfllgflGcigalkenkcllltfsllllvlfllelaa 96 
                  k++lf+ n +f   ++  l+    +w  +  ha     +     ++ + i+     v+ +l +l++++G+ g+l +n+ +l+++s+ll ++f+l+++ 
   CDO68499.1 172 KWVLFIANTIFSAYSLTGLIATllIWFDVwTHA-----DIIRVGNKTELIV---STVAASLGVLTSLIGWSGILLNNRAFLAVYSFLLWICFALLVTP 261
                  99*************999999866666334333.....2222233444444...6677778889999999999************************9 PP

                  XXXXX--HHH........HHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SSHH..HHGSSTT-SSSCGCC..................S--HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  97 gilgfvfsdkargkvseiinnaievkyrddldlkkcqnlldslqkklsCCGvnsykDwsdnpsrencsvPesCclptpnqayleasksiytegCidkl 194
                  g +++  +         +++ +i+ ++  dl l    +    +q++l+CCG          +   + +v ++C  +++              gC+   
   CDO68499.1 262 GYITYKKRTF-------NLEGKINAQWSRDLGL----DGRLRIQNQLHCCGY--------FNPFIEATVSQTCYARST------------LPGCKGPY 328
                  9877777777.......5888888787887777....444489********4........234577899999997654............34666666 PP

                  HHHC--XXXXX.XXXX.XXX.XXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Tetraspanin 195 vnwiksnlkllgggvaalgl.iqlvgillslil 226
                    + ++ l+   +++++ ++ +q++ ++ +l+ 
   CDO68499.1 329 IAFERTVLERW-YTAVFAVVpFQILIMVAALLC 360
                  55555555555.333334555886666655544 PP

>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.4e-06     0.022     172     239 ..     217     284 ..     209     313 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-06
        FTR1 172 vvlGaliavvlglliyrglvklslqsffilegflLllvaagLfsvg.......tlellekaeacngkdyiefkks 239
                 v+ +a+   vl+ li++ ++ l++++f+ + +flL +  a L+  g       t+ l       +gk +  +   
  CDO68499.1 217 VSTVAASLGVLTSLIGWSGILLNNRAFLAVYSFLLWICFALLVTPGyitykkrTFNL-------EGKINAQWSRD 284
                 4455666679*********************************99955332222222.......34444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2966.81
//
Query:       CDO68500.1  [L=520]
Description: hypothetical protein BN946_scf184499.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-80  267.5   0.1      1e-79  267.0   0.1    1.3  1  iPGM_N         BPG-independent PGAM N-terminus (iPGM_N)
    6.9e-72  241.8   1.4      8e-72  241.6   1.4    1.0  1  Metalloenzyme  Metalloenzyme superfamily
    0.00014   21.4   0.0    0.00095   18.7   0.0    2.1  1  Sulfatase      Sulfatase
    0.00063   19.4   0.0     0.0012   18.5   0.0    1.5  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
     0.0037   17.4   0.1     0.0089   16.1   0.1    1.6  1  PglZ           PglZ domain


Domain annotation for each model (and alignments):
>> iPGM_N  BPG-independent PGAM N-terminus (iPGM_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.0   0.1   2.9e-83     1e-79       1     214 [.      86     296 ..      86     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 267.0 bits;  conditional E-value: 2.9e-83
                 HHHHHHCTGGGG-HHHHHHHHHHHHCTSEEEEEEE-SS--SS--CHHHHHHHHHHHHTT-SEEEEEEEE-SSSSTTT-HHHHHHHHHHHHHHCT--EEE CS
      iPGM_N   1 inkaiedgslfenealkeaiekakkngkalHllGLlSdGgVHShidhllallelakeegvkkvvvhaflDGRDtapksaleyleeleeklkelgvgkia 99 
                 i+ +i+++++++nea++e +++ak+ +++lHllGL+SdGgVHShi+hl+alle+ake g+k+v++h+f DGRDtap+sa++y+++l +++k+ +vg++a
  CDO68500.1  86 IDVSIKKRQFHKNEAILESFNRAKNGNGRLHLLGLVSDGGVHSHITHLYALLETAKEVGLKDVYIHFFGDGRDTAPRSAAGYMQDLLAFIKKEKVGEVA 184
                 7899*********************************************************************************************** PP

                 EEEEHHHHT--SS-HHHHHHHHHHHCCSSSEEECTTHHHHHHHHHHTT--GGG---EEE...TCCGGS--TT-EEEE----CCCCHHHHHHHHSTT.HH CS
      iPGM_N 100 svsGRyyaMDRdkrwervekaydalvkgegeskaesaveaieesyakgetDefveptviaeegkkegtikdgDaviffNFRaDRareltraltdke.fk 197
                 +v+GRyyaMDRdkrwer++ a d lvkgege+ ae++v+aiee+y+k+etDef++p+++   + + g+ikdgD+++ffN+R+DR+re+++++  ++   
  CDO68500.1 185 TVVGRYYAMDRDKRWERIKIAVDGLVKGEGEK-AEDPVKAIEERYKKDETDEFLKPIIV---NGDAGRIKDGDTLFFFNYRSDRMREIVSVFGLPDkPM 279
                 *****************************987.899***********************...5689***************************554256 PP

                 CC.--TT-EEEESS-S- CS
      iPGM_N 198 efekakklklvtmteYd 214
                 e++ +k+l+++tm +Y+
  CDO68500.1 280 EVDVPKDLHITTMSRYN 296
                 667899*********96 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.6   1.4   2.2e-75     8e-72       2     247 ..       7     506 ..       6     507 .. 0.97

  Alignments for each domain:
  == domain 1  score: 241.6 bits;  conditional E-value: 2.2e-75
                    EEEEEEETTBB----GGGTT..HHHS--HHHHHHHHH.......SEEEEEESSSTT----HHHHHHHH............................ CS
                    xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF
  Metalloenzyme   2 kvvlvvlDGlGeapadelna..ihvAktPtldkLkkeaPerwlikahgtavglpeddmgnsevgHlel............................ 67 
                    kv l+v DG+G+ap++++++  i   +t ++d++ k +  r ++ ahg+avgl ++ mgnsevgHl++                            
     CDO68500.1   7 KVCLIVHDGWGIAPEKHMKGdaIDAGDTTNMDTISKDHSVR-TLAAHGLAVGLSDGLMGNSEVGHLNIgagrivwqdivridvsikkrqfhkneai 101
                    899************8887777***************6666.9***************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     CDO68500.1 102 lesfnrakngngrlhllglvsdggvhshithlyalletakevglkdvyihffgdgrdtaprsaagymqdllafikkekvgevatvvgryyamdrdk 197
                    ************************************************************************************************ PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     CDO68500.1 198 rwerikiavdglvkgegekaedpvkaieerykkdetdeflkpiivngdagrikdgdtlfffnyrsdrmreivsvfglpdkpmevdvpkdlhittms 293
                    ************************************************************************************************ PP

                    ................................HHHHTT-----EEEEEEEE-S---SSHHHHHT--EEEE--SHHSTT--HHHHHHHHHHHH.CC. CS
                    ................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 ................................lrisetvkfahvtffwnggrsgyfnpleereeipsdtvitfdlqpemkavevaekaldailsgk 131
                                                     +++et+k+ahvtff+ngg++++f++ eer  ips++v+t+d  p+m+   vae++++ +++ +
     CDO68500.1 294 rynidfpfkvafppqamtnvlaewlakqgvkqAHVAETEKYAHVTFFFNGGVEKQFEN-EERHMIPSPKVATYDKDPKMSVHGVAERVAELVHKRE 388
                    *******************************9889***********************.************************************* PP

                    -SEEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS.........-----EEEEEESTT----S--S.SH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Metalloenzyme 132 fdlvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdk.qplTsHtlepVPilivgkglapdkvke.ga 225
                    ++++++n++ +DmvGHtg +ea+++ai + D+av+ + +a+++ + il++tADHgnae+m++ ++  p+T+Ht++pVP++++g+  +  ++ e + 
     CDO68500.1 389 HEFIMCNFAPPDMVGHTGVYEAAVEAITHTDKAVGTVYKACQEAGYILLITADHGNAEQMINPETgAPHTAHTTNPVPFIMTGDPKT-LTFAEdKK 483
                    **************************************************************88889**************998644.34555333 PP

                    HHHT.T-TTEEEEGGGHHHHHHH CS
                    xxxx.xxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 226 kfre.kggLanvaatllnllgle 247
                    +  e +g L++va+t+l+ +gl 
     CDO68500.1 484 DGEEdEGALCDVAPTVLDVMGLP 506
                    333369************99985 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.6e-07   0.00095     208     308 ..     395     504 ..     284     505 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-07
                 H..........HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC......EEE CS
   Sulfatase 208 r..........qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap......rvs 290
                 +           ++ea   +++ +D+++g v++a     +    ++++t+Dhg   e++ +p  g ++  + +    vP+++ +  +  +         
  CDO68500.1 395 NfappdmvghtGVYEAAVEAITHTDKAVGTVYKAC----QEAGYILLITADHGN-AEQMINPETGAPH--TAHTTNPVPFIMTGDPKTLTfaedkkD-- 484
                 0333344444478899999****************....78889*********9.5565666666666..55556679******9999999665433.. PP

                 CSEEE.....GGGHHHHHHHHTT CS
   Sulfatase 291 eelvs.....hiDlfptildlag 308
                     +     + D++pt+ld++g
  CDO68500.1 485 ---GEedegaLCDVAPTVLDVMG 504
                 ...3333556***********99 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.3e-07    0.0012     165     235 ..     381     445 ..     290     459 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.3e-07
                   HHHHCTSSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---E CS
  Phosphodiest 165 vlekelekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGma 235
                   +   ++++  ++++++  +D vgH  G ++ +  +a+   Dka+g  ++a +e      + +++++DHG a
    CDO68500.1 381 AELVHKREHEFIMCNFAPPDMVGH-TGVYEAA-VEAITHTDKAVGTVYKACQEA----GYILLITADHGNA 445
                   222233899***************.6676655.678999**************9....999********65 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.5e-06    0.0089      71     169 ..     343     444 ..     327     448 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
        PglZ  71 eesseglenrekilekklglavkadd..l.lelkkderrellkdkevvyivhnkv..Dalgdkasteqksfeaveeslkelkelvksllee...ngykv 161
                 +  ++++en e +++   ++a + +d  + ++  ++ + el++++e   i++n+   D++g+       + ea+ e+++++ + v  +  +    gy +
  CDO68500.1 343 GGVEKQFENEERHMIPSPKVATYDKDpkMsVHGVAERVAELVHKREHEFIMCNFAppDMVGH-----TGVYEAAVEAITHTDKAVGTVYKAcqeAGYIL 436
                 55566666666666644443333332112022233444459999999999999976699999.....4455555556665544444443322224**** PP

        PglZ 162 lltaDHGf 169
                 l+taDHG+
  CDO68500.1 437 LITADHGN 444
                 *******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3596.65
//
Query:       CDO68501.1  [L=259]
Description: hypothetical protein BN946_scf184499.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.6   0.1    2.4e-07   30.6   0.1    2.5  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   1.3e-11   2.4e-07      53     216 ..      94     257 ..      34     258 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.3e-11
         DLH  53 a...........ldpndeaeaaraldelvskv.aeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYGlspekelee 139
                 +            d+  ++++++ +d  ++ + ++++    l   +++++++   +   +g vG+C+G+  ++++++ +  v a +  ++ ++++++  
  CDO68501.1  94 KgflvlgldyfeRDSFAYHKDQEGWDRQGWIKqKQDRAAVLLPPWIEAVRARY--ELTGLG-VGYCFGAPYVMDYIKTD-WVLAGAFAHPAFLNEDH-- 186
                 04444444443322233333333333333322022222222223344443333..222333.7**************99.8999999***5444433.. PP

         DLH 140 aakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre..syneeaaedawervlelfkqv 216
                     k      + + D  +p +++ + e  l ++++++ ++v++g+ H+Fa + +     +  a+e++ + +l++fk++
  CDO68501.1 187 ---FK-----GVKQVDRTFPVESRRRAEDILVEQKAKYYIQVFSGVEHGFALRGDMsvPIQRWAKEESARGILNWFKHF 257
                 ...22.....23457*************************************99997788999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1828.58
//
Query:       CDO68502.1  [L=250]
Description: hypothetical protein BN946_scf184499.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-18   66.4   0.0    3.1e-18   66.1   0.0    1.1  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.7e-22   3.1e-18       2     216 ..      35     248 ..      34     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.7e-22
         DLH   2 daylatpkna.kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstk 98 
                 ++y+a+ +   ++  ++ + +++G   +n + +++  ae+GY++l  d + ++ ++  + ++++  +   + k ++++  + l   +++++++    +k
  CDO68502.1  35 NTYIARAATGdRERIILFFSDVYGALyKNSQLVMDYWAENGYLVLGLDYFEGDSKALLNLDDETFDY-PGWIKAKQARADALLPPWIHAVRERY-GTSK 131
                 5788888888899***********999**************************94444444433333.33334446677777777788888888.6669 PP

         DLH  99 kvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre.. 195
                 k + vG+C+G+  ++++ + +  + a    +G  +  + ++ + ik p+l++ +e D+ +p +++ + e  l ++++++ ++v++ ++H+Fa + ++  
  CDO68502.1 132 KYVCVGYCFGAPYVMDHLKTD-WIIAG--AFGHPAFLNEDHFRGIKRPLLMSCAEVDHTFPLGSRRRAEDLLVEQKATYYIQVFSSVKHGFALRGDPnv 227
                 99****************999.45554..45555677788899******************************************************55 PP

         DLH 196 syneeaaedawervlelfkqv 216
                  ++   +e++ +++l++f ++
  CDO68502.1 228 PAERWGKEESARAILDWFDHF 248
                 4555569999999****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1943.75
//
Query:       CDO68503.1  [L=275]
Description: hypothetical protein BN946_scf184499.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-49  166.2   0.0      1e-34  120.0   0.0    2.1  2  Hus1      Hus1-like protein
  ------ inclusion threshold ------
       0.11   12.7   0.1        0.2   11.8   0.1    1.4  1  PCNA_C    Proliferating cell nuclear antigen, C-terminal doma


Domain annotation for each model (and alignments):
>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.1e-15   9.5e-12       1      51 [.      41      92 ..      41      93 .. 0.98
   2 !  120.0   0.0   1.1e-38     1e-34      99     273 ..      94     264 ..      93     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.1e-15
        Hus1  1 MkFkaqltdaetlkkvlqslsklgkecilrltpeklrfiiite.addgvqvw 51
                M+F+a+++++ t++k++qs++kl+k+ci+r+ + ++r+i+  + +++g+qvw
  CDO68503.1 41 MRFRATIENVDTFAKIVQSVEKLQKRCIIRFGEHEMRIICTGDvNEGGIQVW 92
                *****************************************99999****** PP

  == domain 2  score: 120.0 bits;  conditional E-value: 1.1e-38
        Hus1  99 LtkkgrvplLaleisglssreretvvthdiPvkvlseseveelkePelrdpdvsilLPdllqLkklvdkfkklssdlltlsankdGeLklvvetdlvrv 197
                 L+kkg+  +L++ei+gl+ + r+  v++ i ++vl+ seve+lkeP +++pdv+ilLP+l +L+++v++++ l+++ + ++an +GeL+l+v+td +rv
  CDO68503.1  94 LAKKGEKSVLSFEITGLTATGRNISVVQHILIDVLRHSEVERLKEPMCPEPDVHILLPPLGKLRTVVERLRPLAGEGVIFRANLSGELQLAVNTDNARV 192
                 99************************************************************************************************* PP

        Hus1 198 sskwskLenpeldasqleqlesereaeeeeedaedeaeeakvrvdlkklarvlsvgelkpkkvvacivhetalvly 273
                 ++ ws+L np++  +    + +  ++ e+++da+d++++  v v+ k l ++l+ ++++ +++ +++++   + l 
  CDO68503.1 193 EVGWSGLANPAMSCG---DKAKVASQGEDDSDAKDPTQMHGVLVSHKCLLKFLNSHVISSTTIACNVADAGGV-LT 264
                 ***********9666...56677777888888999************************88888888877644.33 PP

>> PCNA_C  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.2e-05       0.2      16      58 ..      51      93 ..      39     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHTTT-SEEEEEEETTEEEEEEEETTEEEEEEE-- CS
      PCNA_C 16 sefaricrdlsqlsdsvvisvtkegvkfsasGdiGsasivlkq 58
                  fa+i++ + +l++  +i    + ++  + Gd+ ++ i++  
  CDO68503.1 51 DTFAKIVQSVEKLQKRCIIRFGEHEMRIICTGDVNEGGIQVWS 93
                46***********************************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2196.08
//
Query:       CDO68504.1  [L=529]
Description: hypothetical protein BN946_scf184998.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3567.95
//
Query:       CDO68505.1  [L=76]
Description: hypothetical protein BN946_scf184998.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 533.16
//
Query:       CDO68506.1  [L=572]
Description: hypothetical protein BN946_scf184998.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-09   36.0   0.0    3.3e-08   33.1   0.0    2.1  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    2.5e-05   24.3   0.0    4.2e-05   23.6   0.0    1.4  1  APH             Phosphotransferase enzyme family
    4.3e-05   23.0   0.0    6.1e-05   22.5   0.0    1.2  1  EcKinase        Ecdysteroid kinase
    9.5e-05   21.9   0.0    0.00014   21.3   0.0    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
       0.01   14.6   0.0      0.016   14.0   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
      0.024   14.2   0.0       0.21   11.2   0.0    2.0  2  RIO1            RIO1 family
       0.13   11.5   0.0        1.9    7.7   0.0    2.1  2  PfkB            pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21   5.3e+02      49      77 ..     366     394 ..     351     405 .. 0.79
   2 !   33.1   0.0   1.3e-11   3.3e-08     119     192 ..     454     528 ..     444     543 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
         Kdo  49 yrfklgrtravrEfrllkrLeeagvavpk 77 
                 + ++l + r++ E r+l +  + gv+vp 
  CDO68506.1 366 LDVSLTKSRVAGEARALIKCLRSGVNVPG 394
                 4456788999*****************96 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.3e-11
         Kdo 119 lkrallkavgrliaklhragvnHadlyaknillqqee.eeeaeiwliDldkarlrlradrwrekdLarLkrsfl.k 192
                 +k + ++ +g+ iak+h+a++ H+dl   n++l+     ++++++liD+  a++ +    ++  dL  L+r f  +
  CDO68506.1 454 SKDTVMEMIGTEIAKMHQADIIHGDLTTSNMMLRHPSsRKGLQLVLIDFGLAYTST-LVEDKAVDLYVLERAFAsT 528
                 5778899***************************9998899*************99.7788999******998743 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08   4.2e-05     152     230 ..     458     545 ..     371     555 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.7e-08
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC.....TTEEEEE---TT-EEEECCHHHHCCH......HHCSCHCCCHCHHHHHHHHCS CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvd...pddgrvtGviDfedaglgpplyDlavll......rswtseldpeflaallrayeq 230
                 v++++  + ++  ++ ++HgDl + N++++   +++g    +iDf++a ++  + D av l       + t+++++ + a+ l+aye+
  CDO68506.1 458 VMEMIGTEIAKMHQADIIHGDLTTSNMMLRhpsSRKGLQLVLIDFGLAYTSTLVEDKAVDLyvleraFASTHPQSEPLFAGVLKAYEK 545
                 55555555555567889***************966666668****************988888899633699999**********993 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.4e-08   6.1e-05     216     262 ..     473     519 ..     435     554 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.4e-08
    EcKinase 216 vlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyfly 262
                  + HGDl ++N+m+++ ++ +  +++l+DF l++ ++++ D ++ ly
  CDO68506.1 473 DIIHGDLTTSNMMLRHPSSRKGLQLVLIDFGLAYTSTLVEDKAVDLY 519
                 589*********************************99866444444 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.5e-08   0.00014     102     147 ..     457     507 ..     426     527 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.5e-08
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEE CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlake 147
                  +++ i + ++ +H++ iiH Dl ++N+++ +        l ++DFGla  
  CDO68506.1 457 TVMEMIGTEIAKMHQADIIHGDLTTSNMMLRHPSSrkglqLVLIDFGLAYT 507
                 678999999**********************64445688899******965 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.2e-06     0.016     322     369 ..     469     515 ..     462     528 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.2e-06
  Pkinase_fungal 322 LflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses 369
                     ++ +a i+H D  + N+++  + + ++ + +LiD+ la +   ++ ++
      CDO68506.1 469 MH-QADIIHGDLTTSNMMLRHPSSRKGLQLVLIDFGLAYTSTLVEDKA 515
                     56.99***************99****************9988766665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   4.2e+02      43      89 ..     363     411 ..     349     418 .. 0.67
   2 ?   11.2   0.0   8.2e-05      0.21     108     150 ..     455     503 ..     438     516 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                 -GS-HHHHHHHHHHHHHHHHHHHHHTT--S-..-EEEEETTEEEEE--E CS
        RIO1  43 sktnprklvklwaekEfrnLkrleeagvpvP..kpielkrhvlvmefig 89 
                 + t   +l+k  +  E r+L +  ++gv+vP  + ++  + vl  e+i+
  CDO68506.1 363 HPTLDVSLTKSRVAGEARALIKCLRSGVNVPgiRMVDAVEGVLGIEWIE 411
                 344455667788889****************333455566777666666 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHHHHHHHTSTEEESS-STTSEEEE.....TT.EEEE--GT CS
        RIO1 108 eelyeevleemrklykeaglvHaDLSeyNvlvd.....ed.kvviIDvs 150
                 ++ + e++ + ++ +++a ++H+DL   N+++      ++ ++v+ID++
  CDO68506.1 455 KDTVMEMIGTEIAKMHQADIIHGDLTTSNMMLRhpssrKGlQLVLIDFG 503
                 4455677777777788**************9852222245677888876 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00073       1.9      22      76 ..      41      97 ..      22     120 .. 0.83
   2 ?    1.3   0.0     0.066   1.7e+02     178     236 ..     259     316 ..     243     331 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00073
                TTSEE.EESEEEEEEESHHHHHHHHHHHTT.-EEEEEEEEESSHHHHHHHHHHHHTT CS
        PfkB 22 egelv.evktveksaGGagaNvAvalarlg.advafigavGdDnfGeflleelkkeg 76
                e+++v ++++v++  GG++     ++a+   +d+ ++  +G+ + G+++++ l+ke 
  CDO68506.1 41 EPNSViRAHSVSRVRGGSASTCLSIAAQFPsVDAILLAPLGGNEEGRMIINDLEKER 97
                455666*************8888888877789**********************985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.066
                 HHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE CS
        PfkB 178 lellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve 236
                 l+l+++ad++++n + ++a + +   ++   l  l  + a  ++++v   G++Ga+v +
  CDO68506.1 259 LQLIPHADVIFLNKHYARAHSPQYASSPRAFLLSLTSI-APPHALLVAHWGSDGAAVLS 316
                 6899**********999877666655554444444442.33335666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3811.47
//
Query:       CDO68507.1  [L=542]
Description: hypothetical protein BN946_scf184998.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-15   56.7   0.0    1.2e-14   54.4   0.0    2.0  1  NIF       NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   6.7e-19   1.2e-14       1     144 [.      38     250 ..      38     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 6.7e-19
         NIF   1 ktLVLDLDetLvhskleksk.........klkvegek.........vevsvlkRpgldefLkel.....sklyevvifTasseeyaeavidil.dpekk 75 
                 k+L+LDL++tL+h++ + ++         +      +             v+ Rp+++ f  +l      ++ +v+i+++++++ +++++d+   ++k+
  CDO68507.1  38 KLLILDLNGTLLHRSPHVHRpkqrhhhedR------PrdeqgnllpRLRPVHPRPYMRAFRSYLfapqtREWLDVMIWSSAQPHSVRDMVDKCfGEDKD 130
                 79*************633323443333220......233334555566789999*********9899999**********************9866777 PP

         NIF  76 llshrlyresc.vkkkg.....eyvKdLsl.........................................lgr....dlsrvvivDdspdsfelqpen 123
                 +l + + r+    +++      ++vKdL++                                         l +    +   ++++Ddsp+++elqp n
  CDO68507.1 131 KLLDIWARDTLgLSEDHyhrkvQTVKDLNKpwsyhapkasdasssphlsaastprsspepsspsrpsdetvLTAthtySALTTLLLDDSPRKAELQPFN 229
                 799999999984333223555688999999888888888888888888877777777777766666666552223334666****************** PP

         NIF 124 gipiksffsdkkDneLlkllp 144
                 ++ i ++ ++++ ++L++l++
  CDO68507.1 230 HVCIGEYSGERRAKDLESLQK 250
                 *******99999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3849.80
//
Query:       CDO68508.1  [L=426]
Description: hypothetical protein BN946_scf184998.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-16   60.1  31.6    5.2e-14   52.6  10.7    3.1  3  EamA       EamA-like transporter family
    0.00086   19.3   2.9    0.00086   19.3   2.9    3.3  4  Na_Ca_ex   Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.051   13.4   0.1    1.4  1  E1-N       E1 N-terminal domain
          7    6.6  11.6        1.1    9.2   0.8    3.2  3  RseC_MucC  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6  10.7   1.2e-17   5.2e-14       2     136 ..      66     203 ..      65     204 .. 0.90
   2 !    5.9   5.4     0.003        13       7      79 ..     250     322 ..     244     325 .. 0.60
   3 !   13.3   1.7   1.6e-05     0.071     102     136 ..     323     357 ..     321     358 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.2e-17
        EamA   2 lgillallaalfwaiyfvlskillrkvspl...tltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnasli 97 
                  g+ll+ ++ lf++++ v  k+l +  +p+   +l  vr+ i  i ++ ++++ + +++ l +k++ lll+   + ++++ +  +y+l+++s s a+++
  CDO68508.1  66 TGMLLVAASQLFFSLMNVWVKKLNSLDPPVpafELIWVRMAITWICCITYMFIVKVPDPILGPKGVRLLLVARGFFGFFGLFGVYYSLQYLSLSDATVL 164
                 699*******************744444445449999********9999999999999999999999998888888888888999************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 t+l+P++t+i +++ll+e++++++ l+ + +l+Gv+li 
  CDO68508.1 165 TFLAPMCTAITGAVLLHEPFSWREALAGLASLFGVVLIA 203
                 *************************************96 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.003
        EamA   7 allaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlaf 79 
                 all++l    +++ ++++ ++ +pl+ ++  +  + i+  + + + + +  ++ + dwll+lll  l +++a+
  CDO68508.1 250 ALLGVLGATGAYTSIRAVGKRAHPLHNLVSFSSQCVIVATLAMIIMRTPVVVPMRWDWLLMLLLIGLFGFVAQ 322
                 6677777777777789999999999665533333444443333333333356779999999555555555555 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.6e-05
        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                  +f++i+  ++++ ++++++++g+++il +++++ 
  CDO68508.1 323 IIFATIFERVFFHTSPSFLSVVGTLIILTSAIYVA 357
                 69****************************99885 PP

>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.23     1e+03      11      35 ..      68      92 ..      61     103 .. 0.84
   2 ?   -1.0   1.4      0.35   1.6e+03      83     137 ..     144     191 ..     133     204 .. 0.40
   3 !   19.3   2.9   1.9e-07   0.00086      66     147 ..     238     322 ..     226     326 .. 0.84
   4 ?   -3.0   0.0       1.4   6.2e+03      47      59 ..     345     357 ..     334     372 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
                HHHHHHHHHHHHHHHHHHHHTTCTH CS
    Na_Ca_ex 11 llisvladflvssaeeiakslgisg 35
                +l+++++++++s +++++k+l+  +
  CDO68508.1 68 MLLVAASQLFFSLMNVWVKKLNSLD 92
                5788999999999999999887765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.35
                 HHHHHHHHHBTTSSCECCHHH.H.HHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHH CS
    Na_Ca_ex  83 iGlialigslkvdseslkldl.g.llllvallllllvlllllplfvpgrltvleglv 137
                  Gl +++ sl++    l l++   l++l+ ++  ++ ++ll      +  ++ e+l+
  CDO68508.1 144 FGLFGVYYSLQY----LSLSDaTvLTFLAPMCTAITGAVLL-----HEPFSWREALA 191
                 222222222333....3333322033333333333333332.....36666666665 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHHH.HHHHHHHHHHHHHHHHTCHHHHH....HTEEHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  66 laignvlGsnifnlllviGlialigslkvdseslkldl.gllllvallllllvlllllplfv....pgrltvleglvllllYalylv 147
                 + +++ +G++ + ll+v+G  + ++s+   ++  +  l +l ++ + ++++++l+ ++++++    p+r+++l  l+l++l+++++ 
  CDO68508.1 238 VTPAQRVGAVGVALLGVLGATGAYTSIRAVGKR-AHPLhNLVSFSSQCVIVATLA-MIIMRTpvvvPMRWDWLLMLLLIGLFGFVAQ 322
                 5567889*****************995444333.45566899************9.8899899*******************99865 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHH CS
    Na_Ca_ex  47 nslpElissiiaa 59 
                 ++l+ l+s+i++a
  CDO68508.1 345 GTLIILTSAIYVA 357
                 2222233333333 PP

>> E1-N  E1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.1e-05     0.051      86     145 ..     253     307 ..     223     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
        E1-N  86 adldaeGaavdlepvaklaGpephgllaavaacavaavvlrallddadlpavalplrldy 145
                   l+a Ga ++++ v+k a  + h l++  + c + a+ l +++  +  p v +p+r d+
  CDO68508.1 253 GVLGATGAYTSIRAVGKRAH-PLHNLVSFSSQCVIVAT-LAMIIMRT--P-VVVPMRWDW 307
                 35899**************9.89**********88775.55665433..2.557888776 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.8   0.00024       1.1      62     106 ..     157     201 ..     149     212 .. 0.89
   2 ?   -0.8   0.0      0.31   1.4e+03      94     118 ..     247     271 ..     235     279 .. 0.80
   3 ?    2.3   1.6     0.033   1.5e+02      72     117 ..     313     363 ..     284     372 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00024
   RseC_MucC  62 sllkaallvYllPllllilgallgsallgssellaalgallglvl 106
                 sl  a++l +l P+ + i+ga+l +  +   e+la l++l+g+vl
  CDO68508.1 157 SLSDATVLTFLAPMCTAITGAVLLHEPFSWREALAGLASLFGVVL 201
                 677899*****************9998889999999999999987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.31
   RseC_MucC  94 llaalgallglvlgflivrllskrl 118
                 + +al+++lg+  ++  +r + kr+
  CDO68508.1 247 VGVALLGVLGATGAYTSIRAVGKRA 271
                 5678999999999999999888874 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.033
   RseC_MucC  72 llPllllilgallgsall.....gssellaalgallglvlgflivrllskr 117
                 l+ l+++++ +++++++      +s ++l+++g l++l  +++++   +++
  CDO68508.1 313 LIGLFGFVAQIIFATIFErvffhTSPSFLSVVGTLIILTSAIYVALTKARS 363
                 334444444444444444554766666777777776666666655544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2928.20
//
Query:       CDO68509.1  [L=2062]
Description: hypothetical protein BN946_scf184998.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.4e-104  346.1  84.6    3.6e-31  108.3  15.2    5.1  5  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
       0.16   10.6  56.1      0.011   14.4   7.1    6.5  6  PKD_channel  Polycystin cation channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1     4e-05      0.35       2      59 ..     286     357 ..     285     374 .. 0.81
   2 !   89.1   2.9   2.8e-29   2.5e-25     128     244 ..     518     683 ..     514     684 .. 0.91
   3 !   69.7  14.0   2.4e-23   2.1e-19       6     242 ..     727     954 ..     722     957 .. 0.91
   4 !  108.3  15.2     4e-35   3.6e-31       1     240 [.    1162    1449 ..    1162    1453 .. 0.85
   5 !   89.4  25.4   2.3e-29   2.1e-25       2     240 ..    1499    1742 ..    1498    1746 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHHHHHHCCCSSSS.......HHHHC..........HHHHHHHHHHHHHHHHHHHHHHHHHTH CS
   Ion_trans   2 svfelfilllillncvflaletyfpe.......delek..........tileilelvftaiftlemllkilalgl 59 
                 ++ e +il+li+ln ++l+++ + p+       d   +           + +++ +v  ++ftle++ +i + g+
  CDO68509.1 286 PWTEPIILFLIILNGLVLTIQASRPHalpedwpD---DrpppvtgyfhAWEDYVLFVLFCLFTLEAVARICVSGF 357
                 688889**************88888888886661...244456677879999999999**************999 PP

  == domain 2  score: 89.1 bits;  conditional E-value: 2.8e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.................................................CCSCCSTSSSTTTSSSSS CS
   Ion_trans 128 kdllnvlllllvvlfifaligvqlfkgklrek.................................................necaktwenpnngntnFd 177
                 + l  v++++l+ ++if++ig+q fkg++r++                                                 ++ +k+++npn +  +Fd
  CDO68509.1 518 PLLASVAYFVLFAMIIFSIIGIQSFKGSFRRTchlaptlgeddidlgqncggyidpvtlqpvgylnpqgqnaaikgfvcplGQVCKNDQNPNANLESFD 616
                 77999*************************99***************9999999999999998888877766655555444336799************ PP

                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                  + +a l ++++ + +gw  ++y+++d++ +v++++f+++ii+ +f+l+Nl++avi+++f+ +++++
  CDO68509.1 617 VIYYAALQVVVVSSANGWSGLMYQMMDSEFFVSCFFFIVCIIVLNFWLINLFVAVITNTFSAIRSDT 683
                 *************************************************************999987 PP

  == domain 3  score: 69.7 bits;  conditional E-value: 2.4e-23
                 HHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG CS
   Ion_trans   6 lfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlseesllllsvlrlfrvl 104
                 +  +++ l ++v+ a +t ++++    +il+  el+ t++f +e+++++la+ + ++++++    n+lD+l ++ s +  ++   +  +   l +f+++
  CDO68509.1 727 WCWVFFALASVVLQATRTVDMSSMHA-EILDKGELALTIMFDVEIVIRVLAYLP-DWRKFFYRGQNVLDLLLAIGSSIIQIPAIHNSRVYPWLTIFQLM 823
                 55567888899999999999997777.************************999.9999*****************99996666678888889999999 PP

                 GGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHH CS
   Ion_trans 105 rllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatl 203
                 r+ ++i  +++++ l+ a+++ +  l n+ l+l+ + ++ al++vql +g+++              +++ F ++ +++l++ ++ ++e+w+d+ly+  
  CDO68509.1 824 RFYRVILEIPRMKPLLLAVFGNMYGLANMSLFLIEINLLAALFVVQLVGGDIK------------AGDTIDFGTLYNSFLAVYQVFSSENWTDVLYKAA 910
                 99999999999999999*******************************77777............566889**************************99 PP

                 HHS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 204 dek.....skvaliyfvifiilgsflllNlliaviadnfqelte 242
                   +     s + +++ + +++++++++l ++iavi++nf+  +e
  CDO68509.1 911 VPEvplrqSALVVLFIAGWMFFANYIVLQMFIAVINENFDVAEE 954
                 9999***9*******************************97766 PP

  == domain 4  score: 108.3 bits;  conditional E-value: 4e-35
                  SHHHHHHHHHHHHHHHHHHHCCCSSSS...HHHHC.......HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH. CS
   Ion_trans    1 ssvfelfilllillncvflaletyfpe...delek.......tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl. 85  
                  +++f+lf l++++  +v+  + t+  +               t+++i+e  f  + +le+++k++a g+ + +  Y+r++wn+lDf++++ +l+ + 
  CDO68509.1 1162 HPIFQLFLLFTVIGGIVVESIATPIYRrnfY---AehgffrgTWFDIAEGSFALVLLLEFVIKVIADGFlFTPNAYIRSIWNVLDFFILVGILINAt 1255
                  6899999999996666666664333332220...12345668****************************************************995 PP

                  ...HHHHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC................... CS
   Ion_trans   86 ...vlseesllllsvlrlfrvlrllklisrleglrtlvta.lirsvkdllnvlllllvvlfifaligvqlfkgklrek................... 159 
                     +      +l ++ r ++ lr+l+li+ ++++r +  + +i  +  +l+ +ll+++ ++ +a+ g+++f+g  + +                   
  CDO68509.1 1256 tglI---FIGGLSRITRSLKALRALRLITLVDKMRSTFESlIISGIARILDAALLAILYMIPYAVWGLNIFAGVTNTCnddsvsgigdcineystgf 1349
                  5442...568999*********************99888615666778******************************8888888877776666666 PP

                  .CC.......SCCSTSSSTTTSSS.SSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  160 .ne.......caktwenpnngntn.Fdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnf 237 
                   n+         + w np  ++t  Fd+f ++ll lf++ + egw d+l + ++            s  + i+f+i++++g+++++ l++ +i+ nf
  CDO68509.1 1350 vNDgnsftylVPRVWDNPAPSTTFsFDSFRQSLLILFEIVSLEGWIDVLGVAMSVTgegeqpqtnaSVANSIFFLIYNLMGGVVIFTLFVSIIIGNF 1446
                  51166788888899****7666555************************************************************************ PP

                  HHH CS
   Ion_trans  238 qel 240 
                   + 
  CDO68509.1 1447 TSK 1449
                  875 PP

  == domain 5  score: 89.4 bits;  conditional E-value: 2.3e-29
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..HHHH...HHHH CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..vlse...esll 93  
                   +++  +++l  l++++l+ +t  p++ l+ ++ + + +++t+i+++++l+++++lg     +Y  + wni+D++v+  sl++   v  +   + ++
  CDO68509.1 1499 GWWHRTMTVLFTLHVIALMTQTFTPQHFLD-EFRNDFFIFVTVIYVVDILVRLFGLGW---PSYSANGWNIFDIVVAGGSLITTliV--RfnaGGFV 1589
                  6999**************999998887777.9999999********************...*********************99551..34458899 PP

                  HHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHH CS
   Ion_trans   94 llsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlm 190 
                  ++++ +lf    ++kl++r+++l  l ++ ++s++ +l +l l+++++++fa+++v++f         + ++w + + +n n++++++al+ l  + 
  CDO68509.1 1590 IQQLQKLFITSIAFKLVQRVNSLNKLFKTAVGSLPVILSLLSLWVILFLFFAILFVEVF---------SMTKWNSGETRNENYSSMSKALVMLAFMT 1677
                  9999999****************************************************.........8999************************* PP

                  TTSSHHHHHHHHHHHS...............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  191 ttegwgdilyatldek...............skvaliyfvifiilgsflllNlliaviadnfqel 240 
                  t+egw++ ++++                     +a+ +f+++++l+++++ Nl+ +v++++f ++
  CDO68509.1 1678 TGEGWNQYMHDFALDYprctinangdtdcgsVYWAFSLFIAWNLLSMYIFANLFTGVVVESFYYV 1742
                  ************99999************99899999************************9876 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.5    0.0021        19     372     425 ..     622     678 ..     609     679 .. 0.73
   2 ?   14.4   7.1   1.2e-06     0.011     304     424 ..     817     950 ..     808     951 .. 0.85
   3 ?    4.8   0.8     0.001       9.4     219     258 ..    1212    1252 ..    1205    1264 .. 0.74
   4 ?    1.9   0.3    0.0076        68     307     359 ..    1271    1324 ..    1266    1332 .. 0.88
   5 ?    8.5   3.1   7.6e-05      0.69     217     314 ..    1534    1634 ..    1530    1637 .. 0.87
   6 ?    4.5   8.3    0.0013        12     310     423 ..    1601    1739 ..    1594    1742 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0021
                  HHHHHHHHTT---HH....HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 372 iltlfrlilgdfqyt....elesgnrvLGpllllalvflvifillnlflaiindsyee 425
                  +l +  ++ ++ +++    ++   + + +  ++++ ++++ f l+nlf+a+i +++++
   CDO68509.1 622 ALQV-VVVSSANGWSglmyQMMDSEFFVSCFFFIVCIIVLNFWLINLFVAVITNTFSA 678
                  5444.444555556555555566777889999***********************987 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.2e-06
                  HHHHHHHGGGGG------------------------HH.HHHHHHHHHHHHHHHHSSS....S-STTSSHHHHHHHHHHHHTT---HH.........H CS
  PKD_channel 304 lvflttlkllkvlrfnktlslltktlaralkdvlgfal.vivilflayaqlgvllfGt....qasnfsnlvksiltlfrlilgdfqyt.........e 387
                  l ++ ++++++v+   ++++ l  +++  + +++ ++l +i i +la  +++ l+ G      + +f +l++s+l++   + ++ ++t         e
   CDO68509.1 817 LTIFQLMRFYRVILEIPRMKPLLLAVFGNMYGLANMSLfLIEINLLAALFVVQLVGGDikagDTIDFGTLYNSFLAV-YQVFSSENWTdvlykaavpE 913
                  556778888888888999999999999999999999862567888888888888877633335679**********9.778899999999999*9998 PP

                  HHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 388 lesgnrvLGpllllalvflvifillnlflaiindsye 424
                  +   +  L +l++   +f+  +i+l++f+a+in++++
   CDO68509.1 914 VPLRQSALVVLFIAGWMFFANYIVLQMFIAVINENFD 950
                  98999*****************************986 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.001
                   HHHHHHHHHHHH-------.-------HHHHHHHHHHHHHH CS
  PKD_channel  219 vvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvv 258 
                   +v++l fv+++i         +y+rs+wn+ld++i+v  ++
   CDO68509.1 1212 LVLLLEFVIKVIADGFLFTpNAYIRSIWNVLDFFILVGILI 1252
                   5666677777777665555579*************986654 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.0076
                   HHHHGGGGG--------.----------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel  307 lttlkllkvlrfnktls.lltktlaralkdvlgfalvivilflayaqlgvllfG 359 
                   l  l++l+++ ++ +++  + + + + +  +l +al+ +++++ ya+ g+ +f 
   CDO68509.1 1271 LKALRALRLITLVDKMRsTFESLIISGIARILDAALLAILYMIPYAVWGLNIFA 1324
                   667999*******9996379999************************9998885 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 7.6e-05
                   HHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHH.HHHHH CS
  PKD_channel  217 vfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivl.ailrevlakkllkkveaekeefldFrevaqldqllriilavl.vfltt 309 
                   +f+++ + +vv+ ++++   + +sy  + wn+ d+++   s++++++ +++    + ++l+k+  ++ +f   ++v +l++l++   ++l v+l++
   CDO68509.1 1534 FFIFVTVIYVVDILVRLFGLGwPSYSANGWNIFDIVVAGGSLITTLIvRFNAGGFVIQQLQKLFITSIAFKLVQRVNSLNKLFKTAVGSLpVILSL 1629
                   577888999******************************99987765156677889999999999******************9999987588888 PP

                   HGGGG CS
  PKD_channel  310 lkllk 314 
                   l l+ 
   CDO68509.1 1630 LSLWV 1634
                   88875 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.0013
                   HGGGGG------------------------HHHHHHHHHHHHHHHHHHSS........SS-STTSSHHHHHHHHHHHHTT---HH........... CS
  PKD_channel  310 lkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG........tqasnfsnlvksiltlfrlilgdfqyt........... 386 
                   + ++k+++ ++ l+ l kt   +l+ +l++  + vilfl +a+l v +f+        t  +n+s + k++++l   +    +++           
   CDO68509.1 1601 I-AFKLVQRVNSLNKLFKTAVGSLPVILSLLSLWVILFLFFAILFVEVFSmtkwnsgeTRNENYSSMSKALVML-AFMTTGEGWNqymhdfaldyp 1694
                   4.57888888888999999999**************************983333333334568*******9999.888888888889999*9**** PP

                   ........HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel  387 ........elesgnrvLGpllllalvflvifillnlflaiindsy 423 
                           + + g       l++a  +l+++i+ nlf  ++ +s+
   CDO68509.1 1695 rctinangDTDCGSVYWAFSLFIAWNLLSMYIFANLFTGVVVESF 1739
                   **9999988877777888899999999**********99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.48
# Mc/sec: 12869.31
//
Query:       CDO68510.1  [L=446]
Description: hypothetical protein BN946_scf184998.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-70  235.0   0.0      2e-69  233.7   0.0    1.6  2  Tubulin          Tubulin/FtsZ family, GTPase domain
    7.9e-42  142.4   0.1    1.3e-41  141.7   0.1    1.3  1  Tubulin_C        Tubulin C-terminal domain
    1.7e-06   28.3   0.8      4e-06   27.1   0.0    2.0  2  Misat_Tub_SegII  Misato Segment II tubulin-like domain
     0.0035   16.6   0.0      0.026   13.7   0.0    2.0  2  Tubulin_2        Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.7   0.0   4.5e-73     2e-69       1     196 [.       3     211 ..       3     212 .. 0.99
   2 ?   -2.3   0.0      0.94   4.2e+03      69     108 ..     292     332 ..     283     343 .. 0.62

  Alignments for each domain:
  == domain 1  score: 233.7 bits;  conditional E-value: 4.5e-73
                 EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTTC- CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagnng 87 
                 ei++++ GqcGnqig ++we++ +ehgi+sdg          ++++++++e g ++y+pr+v++d++p +++++++g+  +lf+p+++++g++gagnn+
  CDO68510.1   3 EIVHLQTGQCGNQIGAKFWEVVSDEHGIESDGtykgnndlqlERINVYYNEVGANKYVPRAVLVDLEPGTMDSVRSGPlgNLFRPDNFVFGQSGAGNNW 101
                 79***************************9999****************************************************************** PP

                 -TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SEEE CS
     Tubulin  88 aggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesdavi 185
                 a+g+++ g+e+ +++l+ +rke+e++d+lqgf+it+slgGGTG G+g++++++++eeyp++++ t++v+Ps + s+ vvepyna l++++l+e+sd+++
  CDO68510.1 102 AKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMATFSVVPSpKVSDTVVEPYNATLSVHQLVENSDQTF 200
                 *************************************************************************************************** PP

                 EEEHHHHHCCS CS
     Tubulin 186 vidNdaLlkil 196
                 +idN+aL++i+
  CDO68510.1 201 CIDNEALYDIC 211
                 **********8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.94
                 .....EEEE--CCCCTTC--TT-HHH.HHHHHHHTHHHHHH CS
     Tubulin  69 elfnpnklllgkegagnngaggypev.gkeaaeeileeirk 108
                 ++f+ ++++  ++  ++ + +      gk  ++e++e++++
  CDO68510.1 292 QMFDAKNMMAASDPRHGRYLTVAAVFrGKVSMKEVEEQMQQ 332
                 47888888877777777776555544366666666666554 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.1   2.8e-45   1.3e-41       1     125 [.     261     382 ..     261     383 .. 0.99

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 2.8e-45
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 PrlhF++t++aPl+++ +++++  +v ++t++++++kn+m+++dpr+g+yl++a+++rG+v++kev++++q++++k++a+fveWip+++ +a ++ +p 
  CDO68510.1 261 PRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQQVQQKNSAYFVEWIPNNVLTAQCDIAPR 359
                 9************************************************************************************************** PP

                 -TTTSSCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C 100 vkkqskvsvlmlaNttsiaelfkrll 125
                 + k+    v++l+N+t+i+elfkr++
  CDO68510.1 360 GLKMA---VTFLGNSTAIQELFKRVS 382
                 **999...***************986 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     9e-10     4e-06       1      69 [.       2      72 ..       2      99 .. 0.73
   2 ?   -2.8   0.6       1.7   7.4e+03      21      44 ..     414     437 ..     403     445 .. 0.55

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 9e-10
  Misat_Tub_SegII  1 rEivtlqlGnyaNyvgtHfWNtQesyf......tydeeeeesevdhdvlfregetkqgqvtytPRllivDlkgsl 69
                     rEiv lq G+  N +g+ fW +  +        ty+ +++  ++++   +    ++ g+ +y+PR+++vDl+ ++
       CDO68510.1  2 REIVHLQTGQCGNQIGAKFWEVVSDEHgiesdgTYKGNND-LQLERINVYY---NEVGANKYVPRAVLVDLEPGT 72
                     8********************9766552233333444444.3444333333...367899**********98544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
  Misat_Tub_SegII  21 NtQesyftydeeeeesev.dhdvlf 44 
                      N+Q+ + +y++ ++ + v +++v +
       CDO68510.1 414 NMQDLVAEYQQYQD-ATVeEEEVEY 437
                      55555555555555.3442334444 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.7e-06     0.026     158     203 ..     133     176 ..     102     191 .. 0.78
   2 ?    0.2   0.0     0.074   3.3e+02       9     104 ..     235     348 ..     234     357 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.7e-06
   Tubulin_2 158 vfVvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdvf 203
                 + +  SL GGTG+G+   ++  +r+++++      ++ +v++P+v 
  CDO68510.1 133 FQITHSLGGGTGAGMGTLLISKIREEYPDRMM--ATFSVVPSPKVS 176
                 66899************************997..699999999986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.074
   Tubulin_2   9 Ggkvlaelrrrlreel....................gslelpdkvqFlyiDtdeneknrlkdatdetaeka..geslksrekealsissaevdrilrnl 85 
                 G++++ ++ ++l+++l                     +l+ +   q+ ++ ++e  ++ ++ ++ ++a +   g++l+ ++ +  ++s +ev++ +++ 
  CDO68510.1 235 GITTCLRFPGQLNSDLrklavnmvpfprlhffmtgfAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPrhGRYLTVAAVFRGKVSMKEVEEQMQQV 333
                 556666666666666666666666666666666666667777777777777777777777555555554440044455555555599999999988888 PP

   Tubulin_2  86 lreetasaypsieeWlppe 104
                 ++++ a    +  eW+p++
  CDO68510.1 334 QQKNSA----YFVEWIPNN 348
                 666544....677888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3237.67
//
Query:       CDO68511.1  [L=769]
Description: hypothetical protein BN946_scf184998.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-97  324.1   0.0    1.3e-96  323.3   0.0    1.4  1  Hydantoinase_A  Hydantoinase/oxoprolinase
    6.8e-59  198.5   0.1    3.5e-55  186.5   0.0    2.3  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region


Domain annotation for each model (and alignments):
>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.3   0.0  1.5e-100   1.3e-96       1     288 [.     273     571 ..     273     574 .. 0.98

  Alignments for each domain:
  == domain 1  score: 323.3 bits;  conditional E-value: 1.5e-100
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgak.....arlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat.sklagekkvItfDmGGT 89 
                     r+++++ +Ayl+p+lr+yl+++ + ++++        +r+ +m sdGgl++++++++   + ilSGPa+Gvvg+a t  +++++ +vI++D+GGT
      CDO68511.1 273 RGVSSTADAYLTPVLRQYLDGFFSGFDEKLRDgkvrsPRVEFMGSDGGLLDLNNFSGL--KSILSGPAGGVVGYALTsWDEEKKIPVIGIDVGGT 365
                     78999*****************999999887788999********************9..*****************77999999********** PP

  Hydantoinase_A  90 stDvslikdgevevsleteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGrlqpedfls.. 182
                     stDvs+++ g++ev++et++agv++++p+ldi+tv+agGgs l ++++g ++ gp saga+pgpacyrkGg +l+vTDanlvLGrl p++f++  
      CDO68511.1 366 STDVSRFA-GRYEVVYETTTAGVTIQSPQLDINTVAAGGGSCL-TFRNGLFQAGPHSAGAEPGPACYRKGG-PLAVTDANLVLGRLVPDYFPKif 457
                     ********.**********************************.***************************.*********************** PP

  Hydantoinase_A 183 gpdgdqkldvelarrafeelakelnlk........veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvi 269
                     g++++++ldve+ r af++l +e+n +        ++e+ +g+++va+e+m++++r l+++rg+ +++++l++fGGaG+qha+++a+ lg+k+++
      CDO68511.1 458 GKSEKEPLDVEASRSAFDKLVAEINASvsedkkmgLDEIVYGFIKVANETMCRPIRALTEARGYATSKHILASFGGAGGQHACEIAQLLGIKTIL 552
                     *********************************************************************************************** PP

  Hydantoinase_A 270 vppyagvlsalGmalAdvr 288
                     +++y+++lsa+G+alAd +
      CDO68511.1 553 IHHYSSILSAYGLALADRA 571
                     ****************965 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   0.0   3.9e-59   3.5e-55       1     177 [.      12     253 ..      12     254 .. 0.98
   2 !    9.4   0.6   9.1e-05      0.82       2      18 ..     358     374 ..     357     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 186.5 bits;  conditional E-value: 3.9e-59
  Hydant_A_N   1 rigIDvGGTfTDavaldeke.....eevavlKllst.....pdavaegirealeevleesipr.....tskidvvrmGTTvatNallerkgervaLitt 84 
                 ri+ D+GGTf D+ a  ++      ++ +v+Klls+     +da++egir++le++++e+ipr     t+kid++r++TTvatNallerkg + aL++t
  CDO68511.1  12 RICADRGGTFCDVHASFPDPenpkeRKEIVVKLLSQdpanyRDAPTEGIRRVLESATGEKIPRgttlnTDKIDYIRLSTTVATNALLERKGHKHALLIT 110
                 799************9876688999999*********************************************************************** PP

  Hydant_A_N  85 kgfrdlleigrqnrpdlfelrikkplvlyeevvevdervead..................................................gevlkpl 133
                 +gf+dll ig+q+rp++f+l+i++p  ly++v+evderv++                                                   ++++++ 
  CDO68511.1 111 RGFKDLLLIGNQSRPKIFDLNIRRPPPLYSKVLEVDERVTLVgytsdpqaeehavkfdengkisrgyrgkgwdgqgdaegpgevvqglsgeaVRIMQRP 209
                 *****************************************999******************************************************* PP

  Hydant_A_N 134 deeevrealkalkaagvesiavvllhSylnpehElrvaeiarei 177
                 d  evre+l++l+ +g++sia+v+ hSy++pehEl+va +ar +
  CDO68511.1 210 DLVEVREDLQKLYGEGYRSIAIVFCHSYTYPEHELQVAALARTL 253
                 ****************************************9976 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 9.1e-05
  Hydant_A_N   2 igIDvGGTfTDavalde 18 
                 igIDvGGT TD+  + +
  CDO68511.1 358 IGIDVGGTSTDVSRFAG 374
                 8**********977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5343.40
//
Query:       CDO68512.1  [L=508]
Description: hypothetical protein BN946_scf184998.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-51  171.7   0.1    1.3e-50  170.7   0.1    1.6  1  ENTH      ENTH domain
  ------ inclusion threshold ------
       0.13   12.5   0.5       0.26   11.5   0.5    1.5  1  AGH       Androgenic gland hormone


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.1   1.4e-54   1.3e-50       1     125 []      22     145 ..      22     145 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 1.4e-54
                 --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B-T CS
        ENTH   1 yseteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktlsefkyide 99 
                 ys++++kvr+at+ndpwGps+++++e+a+l+y++ ++ ei+++++krL n+kgk+wr+v+K+Lt+++YLl+ Gse+v+  +++n+++iktl+ef+yide
  CDO68512.1  22 YSDVQAKVRDATSNDPWGPSGTQMNELAQLSYNQDSFVEIMEMLDKRL-NDKGKNWRHVFKSLTVLDYLLHAGSENVVVYFRDNLYVIKTLKEFQYIDE 119
                 799*********************************************.************************************************** PP

                 TS-B-HHHHHHHHHHHHHHHT-HHHH CS
        ENTH 100 egkdeglniRkkakkiislledeerl 125
                 egkd+g n+R+kak+i++ll+de+rl
  CDO68512.1 120 EGKDQGANVRQKAKDITNLLQDESRL 145
                 **********************9986 PP

>> AGH  Androgenic gland hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   2.9e-05      0.26      55     100 ..     167     213 ..     136     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
         AGH  55 ededddffhpralsipsavesgdekeedels.llsrskreiafheec 100
                 ed+d+df   r+ s+p+  ++g+++e+del   l  skr  a  e  
  CDO68512.1 167 EDDDQDFPRSRSQSLPPRRRNGNNNEDDELRkALEESKRTAAEEEAR 213
                 78999***********************9962678888887765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4019  (0.224162); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.51
# Mc/sec: 2997.93
//
Query:       CDO68513.1  [L=884]
Description: hypothetical protein BN946_scf184998.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-09   37.6   3.1    2.7e-07   31.0   0.0    3.4  3  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.2    0.0016        28      24      80 ..     157     212 ..     147     215 .. 0.81
   2 !   31.0   0.0   1.5e-11   2.7e-07      15     104 ..     374     495 ..     359     496 .. 0.80
   3 ?   -1.8   0.2      0.24   4.4e+03       9      26 ..     619     643 ..     586     684 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0016
                 HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHH CS
         PCI  24 dleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEki 80 
                 ++ ++ l+  +++  le  ++++ +++++ + k ++++++ rl ++l l   +v k+
  CDO68513.1 157 SY-RTALETLKNNARLETIYQQIAQQAFKFCLKHQRKVEFRRLCETLRLHLANVAKY 212
                 45.566666777888899999999999988888**************9988777665 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 1.5e-11
                 HHHHHHHHHHH....................HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHH.HTSSH...........HHHHHHH CS
         PCI  15 lsgfseelkdl....................eeelladdglaqllesLekkvrerllrqvskiyssislerlakl.ldlsv...........devEkil 81 
                 l+  +e +k+l                     + l ad   a +++ L++ +  rll q+s+ yssi++++l +l ++l++           +++E ++
  CDO68513.1 374 LKLSPEVVKSLynvlevtfepltlcasvaplLKSLAADSSYASYVPLLQHALLSRLLHQLSQVYSSIKISKLLELvVPLKEaavegtgsyddEQIEAYV 472
                 6666666666666666666666666655555566677788888***************************99987357888****************** PP

                 HHHHHTTSSSEEEETTTTEEEEC CS
         PCI  82 vklIrdgeirakidqesgivvfk 104
                 + + r ge+++++d+ +g + f+
  CDO68513.1 473 MGCARRGELNVRVDHAAGSLTFN 495
                 *****************999886 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.24
                 HHHHTSHHHHHHHHHHH.......H CS
         PCI   9 alrsgnlsgfseelkdl.......e 26 
                  lr+++++++++e ++         
  CDO68513.1 619 KLRNQEIERARKEIESIraeeakkL 643
                 4566666666666666632222220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2363  (0.131798); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.54
# Mc/sec: 4903.69
//
Query:       CDO68514.1  [L=205]
Description: hypothetical protein BN946_scf184998.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1445.19
//
Query:       CDO68515.1  [L=419]
Description: hypothetical protein BN946_scf184998.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-120  402.3   0.0    8.9e-66  222.0   0.0    2.0  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.1e-06   28.1   0.0    1.8e-06   27.4   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II
    1.1e-05   24.9   0.6    2.7e-05   23.7   0.2    1.7  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.096   11.6   0.3       0.41    9.6   0.0    2.1  3  Aminotran_5      Aminotransferase class-V
       0.28   10.8   0.6       0.62    9.7   0.1    1.9  2  BRK              BRK domain


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   3.4e-56   1.2e-52       1     173 [.      17     193 ..      17     196 .. 0.96
   2 !  222.0   0.0   2.5e-69   8.9e-66     195     382 .]     196     416 ..     193     416 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 3.4e-56
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TT CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea...fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaG 91 
                      eTl++hagqe d++t+a+a+piy++++++f++++++   f+ ++ g++YsR+gnpt+sv+e+r+aaLegg aa+a ssG aA+++ai a+++aG
       CDO68515.1  17 ETLQLHAGQEIDSATNARAPPIYASTSFVFNNSKHGadlFGLRSLGNIYSRMGNPTVSVFERRMAALEGGVAAVAASSGHAAQFMAIAAICRAG 110
                      69*********************************99*9******************************************************* PP

                      EEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHH.HHTT-EEEEE CS
  Cys_Met_Meta_PP  92 deivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiakla.kkagvlvvvD 173
                      d+i++s++lYggt++++k +lkk+ i+vkfv  +++e++++ai+e+tk++y+E+++np+  v+ +++iak++ ++++v  v  
       CDO68515.1 111 DNIISSSYLYGGTYNQFKVFLKKFDISVKFVHSQEPEAFAAAIDEKTKAIYVESIGNPKNTVAPLPEIAKAClHDHDVHAVAN 193
                      *********************************************************************98636666776655 PP

  == domain 2  score: 222.0 bits;  conditional E-value: 2.5e-69
                      ETTTTTTCSSS--EEEEEESSCHHHHHHHHHHH...............................HHHT-B--HHHHHHHHHHHTTHHHHHHHHH CS
  Cys_Met_Meta_PP 195 SaTKylgGhsdvvaGvivvkgkeelkkelkflq...............................nalGavlspfdawlllrGlkTLslRlerhq 257
                       aTK++gGh++v++Gv+++ gk++++ + kf                                 +++G++++pf+a+lll+Gl+TLslR +rh+
       CDO68515.1 196 HATKWIGGHGTVLGGVVIDGGKFDWAASGKFPDftepaegyhglrfvetfgravlavkvrldvlRDMGPAMDPFAAFLLLQGLETLSLRAQRHS 289
                      59*************************99887799*********************************************************** PP

                      HHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSS..SG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHH CS
  Cys_Met_Meta_PP 258 enAlkvAefLekhpkvekvyYpglpshpqhelakkqlk..gaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipke 349
                       nAl++A++Lekhpkv +v+Y gl+sh++++ a + l+   +gg+l+F +k++++  +++vd++kl+s+++++G++++l+++pas+th+++++e
       CDO68515.1 290 DNALELARWLEKHPKVAWVSYLGLESHESYKDALRLLRpnAFGGMLTFGVKGDAQIGSQVVDKMKLASNLANVGDAKTLVIHPASTTHQQLTAE 383
                      *********************************99886226777************************************************** PP

                      HHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 350 ereaagvtddliRlsvGiEdvdDliaDlkqale 382
                      e+ a+gvt+dliR+svGiE++ D+iaD+++al+
       CDO68515.1 384 EQLASGVTPDLIRVSVGIENISDIIADFDNALK 416
                      *******************************96 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.9e-10   1.8e-06      49     186 ..      76     192 ..      57     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.9e-10
                    HHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEES....S-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHT CS
  Aminotran_1_2  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdp....tyasyknilrlsggevvryplyseedfhldlealeealk 140
                    +e ++a + g           a v  s  +a++ ++i+++ + +gd+i++++     ty ++k  l+  ++ v  ++       +   ea+ +a++
     CDO68515.1  76 FERRMAALEG--------GV-AAVAASSGHAAQFMAIAAI-CRAGDNIISSSYlyggTYNQFKVFLKKFDISVKFVH-------SQEPEAFAAAID 154
                    5555555555........44.4455556677888888888.79********98333356677777888888899999.......99********** PP

                    THHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEE CS
  Aminotran_1_2 141 eapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfv 186
                    e      ktk i+ves+ NP  tva+l+e+ k     + + ++ + 
     CDO68515.1 155 E------KTKAIYVESIGNPKNTVAPLPEIAKA--CLHDHDVHAVA 192
                    *......***********************998..66666666665 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.2   7.6e-09   2.7e-05      21     135 ..      68     180 ..      59     192 .. 0.79
   2 ?   -2.1   0.0      0.51   1.8e+03     222     262 ..     266     306 ..     262     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 7.6e-09
                      S.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEE CS
  DegT_DnrJ_EryC1  21 s.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertk 113
                      + +p+v+ FE+++aa  g   a+a ssG aA  +a+ a+   +gd +I  s+ + +t n    + +k   + v+   +  +p+a +aai e+tk
       CDO68515.1  68 MgNPTVSVFERRMAALEGGVAAVAASSGHAAQFMAIAAICR-AGDNIISSSYLYGGTYNQFK-VFLKKFDISVK-FVHSQEPEAFAAAIDEKTK 158
                      25899********************************9543.36**************9854.44555544454.345669************* PP

                      EEEEB-GGGB--.-HHHHHHHHH CS
  DegT_DnrJ_EryC1 114 aIlpVhlyGqva.dmdalkaiaa 135
                      aI  V+  G++   ++ l +ia+
       CDO68515.1 159 AIY-VESIGNPKnTVAPLPEIAK 180
                      *96.5666665535666666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.51
                      -BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCE CS
  DegT_DnrJ_EryC1 222 lteiqAAiglaqLerldelvarRreiaelykeeLaelegta 262
                      ++ ++A ++l+ Le l+   +r  ++a  + + L++ +++a
       CDO68515.1 266 MDPFAAFLLLQGLETLSLRAQRHSDNALELARWLEKHPKVA 306
                      88899999999999999999999999999999999887665 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.15   5.4e+02      85     116 ..      83     113 ..      74     143 .. 0.74
   2 ?    9.6   0.0   0.00011      0.41      85     168 ..     107     186 ..      90     193 .. 0.71
   3 ?   -1.7   0.1      0.29     1e+03      94     145 ..     351     399 ..     346     417 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.15
                  -TTTSEEEEETTSHGGGTHHHHHHHHHHTEEE CS
  Aminotran_5  85 lkpgdeivvteaehhanlvpwqelakrtgakv 116
                  l+ g  +v  +++h a+++++++++++ g ++
   CDO68515.1  83 LEGGVAAVAASSGHAAQFMAIAAICRA-GDNI 113
                  677778888999999999999999854.5444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00011
                  -TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHH.HHT CS
  Aminotran_5  85 lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigkla.kkk 168
                   ++gd+i+ ++  + ++ +  +   k+  + vk++        ++++++++++ektk++++  + n   t+ p++ei+k++ +++
   CDO68515.1 107 CRAGDNIISSSYLYGGTYNQFKVFLKKFDISVKFVHS-----QEPEAFAAAIDEKTKAIYVESIGNPKNTVAPLPEIAKAClHDH 186
                  5666666666666666665555555555555555554.....6799********************************9872445 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.29
                  ETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEE CS
  Aminotran_5  94 teaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvai 145
                   ++   +nl   +++ +++++ ++ ++ +++++   ++l++ ++++   v++
   CDO68515.1 351 DKMKLASNL---ANVGDAKTLVIHPASTTHQQLTAEEQLASGVTPDLIRVSV 399
                  556666666...7778888888999999888888888888888888777665 PP

>> BRK  BRK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.3   1.2e+04       7      13 ..      73      79 ..      71      79 .. 0.84
   2 ?    9.7   0.1   0.00017      0.62      28      42 ..     294     308 ..     291     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.3
         BRK  7 VpVinrk 13
                V+V++r+
  CDO68515.1 73 VSVFERR 79
                99**996 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00017
         BRK  28 dLeeWLeenPgyeva 42 
                 +L++WLe++P+ +++
  CDO68515.1 294 ELARWLEKHPKVAWV 308
                 799*******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2939.53
//
Query:       CDO68516.1  [L=648]
Description: hypothetical protein BN946_scf184998.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.043   14.3   1.3      0.043   14.3   1.3    3.4  3  zf-C2H2        Zinc finger, C2H2 type
        0.1   12.7   7.6        1.3    9.1   0.5    2.5  3  zf-C2H2_aberr  Aberrant zinc-finger
       0.75   10.8  12.9        1.9    9.6   0.7    3.7  3  zf-C2H2_4      C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.2   7.2e+03       6      23 .]     109     127 ..     109     127 .. 0.82
   2 ?   14.3   1.3   7.2e-06     0.043       1      20 [.     420     441 ..     420     443 .. 0.96
   3 ?    7.1   0.6    0.0014       8.2       1      21 [.     501     523 ..     501     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 Cg   ++ + L+ H    H
  CDO68516.1 109 CGLNLNDLHALVDHFEEcH 127
                 8889999999999976655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 7.2e-06
                 EEET..TTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHi 20 
                 ++Cp   C+ks+k+   Lk H+
  CDO68516.1 420 FRCPkpNCNKSYKQANGLKYHM 441
                 89*******************9 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0014
                 EEET..TTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHir 21 
                 y C+  dC +++k+   L+ H++
  CDO68516.1 501 YACGvgDCQRRYKNMNGLRYHYQ 523
                 789999***************86 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.6   9.8e+03       8      65 ..     109     127 ..      97     131 .. 0.59
   2 ?    9.1   0.5   0.00022       1.3     141     163 ..     420     442 ..     415     449 .. 0.88
   3 ?    7.6   0.1   0.00062       3.7     141     163 ..     501     523 ..     488     528 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
  zf-C2H2_aberr   8 CdlkyssvlglrrhlveykhslytnsefslkCpvrkCsesivelentelleehlekeh 65 
                    C+                                        +l+ +  l +h+e  h
     CDO68516.1 109 CG---------------------------------------LNLNDLHALVDHFEECH 127
                    33.......................................34555555556665555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00022
  zf-C2H2_aberr 141 iyCripGCgkrfkslmaYkYhck 163
                    + C+ p C+k++k+  + kYh +
     CDO68516.1 420 FRCPKPNCNKSYKQANGLKYHMT 442
                    78999****************75 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00062
  zf-C2H2_aberr 141 iyCripGCgkrfkslmaYkYhck 163
                    + C++  C +r+k++ + +Yh +
     CDO68516.1 501 YACGVGDCQRRYKNMNGLRYHYQ 523
                    57*******************65 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.0       0.2   1.2e+03       5      24 .]     108     127 ..     106     127 .. 0.89
   2 ?    9.6   0.7   0.00032       1.9       1      20 [.     420     441 ..     420     443 .. 0.93
   3 ?    6.9   0.3    0.0023        13       1      21 [.     501     523 ..     501     525 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.2
   zf-C2H2_4   5 iCgksFsskkaLlrHlkthH 24 
                  Cg + ++ +aL +H++  H
  CDO68516.1 108 CCGLNLNDLHALVDHFEECH 127
                 4999***********99887 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00032
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHl 20 
                 f+Cp   C+ks++  ++L+ H+
  CDO68516.1 420 FRCPKpnCNKSYKQANGLKYHM 441
                 8999999**************9 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0023
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlk 21 
                 + C +  C++++++ ++L+ H +
  CDO68516.1 501 YACGVgdCQRRYKNMNGLRYHYQ 523
                 6788888**************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1796  (0.100173); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 4293.44
//
Query:       CDO68517.1  [L=348]
Description: hypothetical protein BN946_scf184998.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-10   38.8  12.9    8.8e-07   29.0   0.3    3.9  3  zf-C2H2     Zinc finger, C2H2 type
    3.6e-09   36.6  10.3    5.3e-09   36.1   0.4    4.2  4  zf-H2C2_2   Zinc-finger double domain
    1.2e-06   29.0   6.8      0.027   15.1   3.5    3.3  3  FOXP-CC     FOXP coiled-coil domain
    0.00065   20.3   6.4     0.0098   16.7   0.3    3.7  3  zf-C2H2_4   C2H2-type zinc finger
     0.0019   18.2   0.4      0.022   14.7   0.0    2.7  3  zf-C2H2_6   C2H2-type zinc finger
  ------ inclusion threshold ------
      0.024   15.0   1.4        3.4    8.2   0.0    3.5  4  zf-met      Zinc-finger of C2H2 type
       0.16   11.8   0.2        1.4    8.7   0.0    2.4  2  zf-C2H2_11  zinc-finger C2H2-type
        1.6    8.9  10.7         12    6.1   3.2    3.4  3  zf_ZIC      Zic proteins zinc finger domain
          2    8.5  10.2       0.19   11.7   2.5    2.8  3  Zap1_zf2    Zap1 zinc finger 2


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   3.9e-05     0.077       2      23 .]      63      87 ..      62      87 .. 0.92
   2 ?    2.6   1.6      0.11   2.3e+02      12      23 .]     111     122 ..      95     122 .. 0.84
   3 !   29.0   0.3   4.4e-10   8.8e-07       1      23 []     128     153 ..     128     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
                EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  2 kCp..dCgksFkrksnLkrHirt.H 23
                +C   dCgk+F +   L  Hi   H
  CDO68517.1 63 TCQweDCGKVFDHLPTLIEHIHGdH 87
                79999***************98777 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
                 SHHHHHHHHHCC CS
     zf-C2H2  12 rksnLkrHirtH 23 
                 ++  L +Hir+H
  CDO68517.1 111 SRFALISHIRSH 122
                 67889*****99 PP

  == domain 3  score: 29.0 bits;  conditional E-value: 4.4e-10
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ++Cp  +C+ksF+r++ L +H+r+ H
  CDO68517.1 128 FTCPrpECDKSFTRSDALAKHMRIqH 153
                 89*********************999 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.56   1.1e+03      17      26 .]      64      75 ..      57      75 .. 0.79
   2 ?   -0.1   0.5      0.75   1.5e+03       5      18 ..      87      98 ..      79     102 .. 0.67
   3 !   36.1   0.4   2.6e-12   5.3e-09       1      26 []     114     141 ..     114     141 .. 0.94
   4 ?    3.2   0.0     0.069   1.4e+02       1      11 [.     144     154 ..     144     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.56
   zf-H2C2_2 17 Cp..lCdkaFkt 26
                C    C+k+F +
  CDO68517.1 64 CQweDCGKVFDH 75
                55557*****87 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.75
   zf-H2C2_2  5 HirkHtgekpyeCp 18
                Hi +H++   y+C+
  CDO68517.1 87 HIGVHKS--NYTCE 98
                5666654..38885 PP

  == domain 3  score: 36.1 bits;  conditional E-value: 2.6e-12
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFkt 26 
                 +L  Hir+Htgekp++Cp  +Cdk+F++
  CDO68517.1 114 ALISHIRSHTGEKPFTCPrpECDKSFTR 141
                 5789**********************85 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.069
   zf-H2C2_2   1 nLrrHirkHtg 11 
                 +L +H+r  ++
  CDO68517.1 144 ALAKHMRIQHN 154
                 699****9665 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.5   1.3e-05     0.027       6      40 ..      63      97 ..      60      99 .. 0.88
   2 ?    3.1   0.1     0.078   1.5e+02       6      27 ..      96     120 ..      93     127 .. 0.61
   3 !   11.3   0.1   0.00021      0.42       6      33 ..     129     156 ..     125     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
     FOXP-CC  6 vCkWPgCekvledveeflkhlnseHalddkstaql 40
                +C+W +C kv++ + ++++h++ +H    ks   +
  CDO68517.1 63 TCQWEDCGKVFDHLPTLIEHIHGDHIGVHKSNYTC 97
                7************************9888876655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.078
     FOXP-CC   6 vCkWPgC...ekvledveeflkhln 27 
                 +C+W gC     + ++  ++++h++
  CDO68517.1  96 TCEWAGCvrrGIAQTSRFALISHIR 120
                 8******532223334445666765 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00021
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHald 33 
                 +C  P+C+k ++ ++++ kh++ +H+++
  CDO68517.1 129 TCPRPECDKSFTRSDALAKHMRIQHNIS 156
                 5999*********************975 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4     0.082   1.6e+02       3      22 ..      64      85 ..      63      87 .. 0.76
   2 ?    1.4   0.0      0.39   7.8e+02      12      23 ..     111     122 ..      95     123 .. 0.82
   3 !   16.7   0.3   4.9e-06    0.0098       1      24 []     128     153 ..     128     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.082
   zf-C2H2_4  3 Cpi..CgksFsskkaLlrHlkt 22
                C +  Cgk+F    +L  H+  
  CDO68517.1 64 CQWedCGKVFDHLPTLIEHIHG 85
                55555*****888889999865 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.39
   zf-C2H2_4  12 skkaLlrHlkth 23 
                 s+ aL +H+++h
  CDO68517.1 111 SRFALISHIRSH 122
                 5667999***99 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 4.9e-06
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 f+Cp   C+ksF++++aL +H++ +H
  CDO68517.1 128 FTCPRpeCDKSFTRSDALAKHMRIQH 153
                 7788888****************998 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.83   1.7e+03       7      12 ..      69      74 ..      69      82 .. 0.72
   2 ?   -1.8   0.1       1.7   3.5e+03      16      24 ..     114     122 ..     114     124 .. 0.90
   3 !   14.7   0.0   1.1e-05     0.022       6      24 ..     134     153 ..     133     155 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.83
   zf-C2H2_6  7 CsksFp 12
                C+k+F 
  CDO68517.1 69 CGKVFD 74
                *****6 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
   zf-C2H2_6  16 aLggHkksH 24 
                 aL+ H +sH
  CDO68517.1 114 ALISHIRSH 122
                 899**9999 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.1e-05
   zf-C2H2_6   6 vCsksFpslqaLggHk.ksH 24 
                 +C+ksF   +aL +H+ ++H
  CDO68517.1 134 ECDKSFTRSDALAKHMrIQH 153
                 9***************8888 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.9   5.9e+03       6      22 ..      69      85 ..      67      85 .. 0.80
   2 ?    3.7   0.0     0.043        85      11      23 ..     110     122 ..     108     123 .. 0.91
   3 ?    8.2   0.0    0.0017       3.4       6      21 ..     135     150 ..     133     152 .. 0.94
   4 ?   -2.2   0.1       3.1   6.1e+03      11      20 ..     274     283 ..     271     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.9
      zf-met  6 CnvtfnsesqlksHlqG 22
                C ++f +  +l+ H  G
  CDO68517.1 69 CGKVFDHLPTLIEHIHG 85
                99999888889999765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.043
      zf-met  11 nsesqlksHlqGK 23 
                 +s+ +l+sH +++
  CDO68517.1 110 TSRFALISHIRSH 122
                 7999*******98 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0017
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C+++f+   +l  H++
  CDO68517.1 135 CDKSFTRSDALAKHMR 150
                 **************98 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.1
      zf-met  11 nsesqlksHl 20 
                 +++ +l++H 
  CDO68517.1 274 KHKWVLQQHE 283
                 6778999*96 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.4     8e+02       1      14 [.      60      73 ..      60      79 .. 0.85
   2 ?    8.7   0.0   0.00071       1.4       9      28 ..     134     153 ..     130     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.4
  zf-C2H2_11  1 destcqCleCGlcf 14
                d+ tcq  +CG  f
  CDO68517.1 60 DTMTCQWEDCGKVF 73
                6679**99**9755 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00071
  zf-C2H2_11   9 eCGlcftSqlsLsRHlfIvH 28 
                 eC   ft + +L +H++I H
  CDO68517.1 134 ECDKSFTRSDALAKHMRIQH 153
                 79999*************99 PP

>> zf_ZIC  Zic proteins zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.2    0.0061        12      22      44 ..      67      89 ..      56      90 .. 0.87
   2 ?   -1.8   0.2       1.8   3.6e+03       5      13 ..      92     100 ..      91     102 .. 0.79
   3 ?    5.7   0.0    0.0078        15      20      42 ..     131     153 ..     124     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0061
                ------BSSHHHHHHHHHCTTT- CS
      zf_ZIC 22 kpCsktFstmhelVtHltveHVG 44
                  C+k+F  +  l+ H+  +H+G
  CDO68517.1 67 EDCGKVFDHLPTLIEHIHGDHIG 89
                45********************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                 ---B---B- CS
      zf_ZIC   5 kqelsCkWi 13 
                 k + +C+W 
  CDO68517.1  92 KSNYTCEWA 100
                 56789***6 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0078
                 S-------BSSHHHHHHHHHCTT CS
      zf_ZIC  20 pkkpCsktFstmhelVtHltveH 42 
                 p+  C+k F++   l  H+ + H
  CDO68517.1 131 PRPECDKSFTRSDALAKHMRIQH 153
                 7899***************9999 PP

>> Zap1_zf2  Zap1 zinc finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.5   9.6e-05      0.19       1      24 []      64      87 ..      64      87 .. 0.98
   2 ?    0.0   0.1      0.45   8.9e+02       1       6 [.      97     102 ..      97     107 .. 0.90
   3 ?   -0.9   0.1      0.84   1.7e+03      15      20 ..     114     119 ..     111     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.6e-05
    Zap1_zf2  1 CnWkDCdFegeDicSLiNHINdkH 24
                C+W+DC    + + +Li HI ++H
  CDO68517.1 64 CQWEDCGKVFDHLPTLIEHIHGDH 87
                **********************99 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.45
    Zap1_zf2   1 CnWkDC 6  
                 C+W  C
  CDO68517.1  97 CEWAGC 102
                 ***999 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.84
    Zap1_zf2  15 SLiNHI 20 
                  Li+HI
  CDO68517.1 114 ALISHI 119
                 69***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2423.86
//
Query:       CDO68518.1  [L=781]
Description: hypothetical protein BN946_scf184998.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5478.77
//
Query:       CDO68519.1  [L=165]
Description: hypothetical protein BN946_scf184998.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.021   14.6   0.0    1.4  1  DUF3294   Protein of unknown function (DUF3294)


Domain annotation for each model (and alignments):
>> DUF3294  Protein of unknown function (DUF3294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.1e-06     0.021      75     149 ..      75     145 ..      45     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-06
     DUF3294  75 VgELQgqLdlleersirRlvNstktkdkdllaplpnkDgeipeledslfpktlkefk.klddvkliklakFYellp 149
                 V   Q  L ++  rs  R +N  +++ k+l  plpn D          fp++++++k ++++ ++++la+ Ye+  
  CDO68519.1  75 VLQQQRILTAVALRSELRAFNGMASQWKQL--PLPNGDPFPAG---VPFPRNIRDLKdNMSKEDVCRLAQIYEIEH 145
                 555566788899999999999999888875..99999964444...46********846**************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1344  (0.0749624); expected 358.6 (0.02)
Passed bias filter:                      782  (0.0436165); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1289.86
//
Query:       CDO68520.1  [L=827]
Description: hypothetical protein BN946_scf184998.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.9e-159  529.2   1.8   7.8e-159  528.8   1.8    1.1  1  Peptidase_M36   Fungalysin metallopeptidase (M36)
    3.9e-16   58.6   3.1    7.4e-16   57.7   3.1    1.5  1  FTP             Fungalysin/Thermolysin Propeptide Motif
  ------ inclusion threshold ------
      0.081   12.8   0.3        0.2   11.5   0.1    1.7  2  Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical d
       0.95   10.1   2.1        1.9    9.2   2.1    1.5  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach


Domain annotation for each model (and alignments):
>> Peptidase_M36  Fungalysin metallopeptidase (M36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.8   1.8  1.7e-162  7.8e-159       1     371 []     343     760 ..     343     760 .. 0.96

  Alignments for each domain:
  == domain 1  score: 528.8 bits;  conditional E-value: 1.7e-162
                    EEEE--TT--SGGG---EEEE--S-TTTTTT-TTB-S.S-B................-SBSBSSSEEEEE-TT-.S--T--....B-TT.-EE--- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36   1 sYkvfplgvedpsegerelvtdpedkeaSplgWhdteakak..............aettttrGNNvlaqedseg.snllrpgssadsgaelkfdyp 81 
                    +Y+vf++g++dps g+r++++++ d+ aSp gWh    +++              ++tttt+GNNv+a+ed+eg +n+  +++++d+g +++fd+ 
     CDO68520.1 343 TYRVFEWGINDPSLGDRSIQKENFDALASPWGWHALPVANDpsssylsakdaskiRNTTTTWGNNVFAHEDWEGrNNW-VNNYRPDAGPRKAFDFV 437
                    7**********************************9999889*************9******************6666.566999*********** PP

                    --TT-.......SSGGGGHHHHHHHHHHHHHHHHHHHHHTT--TTTT---S--TTSSS--S--EEEEET-TT-SS-EEEE--STTS-EEEEE-EE- CS
                    xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36  82 yseke.......eepkkyadaavtnlFYtnnlihDllyryGFdEaagNFqqnnfgkggkgnDaviaeaqdgsgtnnAnfatppDGqkgrmrmylwt 170
                    y++k+       ee++ky++a+vt+lFYt+nl+hDl+yryGF E agNFqq+nfg+gg++nDavia+aqdgsg+nnAnf+tppDGq+gr+rmylw+
     CDO68520.1 438 YQPKKtdsedalEEAQKYINATVTQLFYTSNLVHDLYYRYGFHELAGNFQQYNFGRGGEENDAVIANAQDGSGYNNANFMTPPDGQNGRCRMYLWN 533
                    ***66667778899********************************************************************************** PP

                    SSSS-EEGGG-HHHHHHHHHHHHHHHHTT-TT---TT-SHHHHHHHHHHHHHHHHHHH--T--T.T--B-SSHHHHT-TT-SSSS-B-S-TTT--- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36 171 kakparDgdldngiviHEytHGlsnRLtGgpanssclqtkesggmgEGwsDflallltlkeddeaekdrgigtyaanqpkgiRkypYstdltvnpl 266
                    +a+p+rDgdl++giviHE++HGls RLtGgpans+cl++ esggmgEGw+Dfla+++++++   +++d+++g++aan +kgiR+ypYs + t+np+
     CDO68520.1 534 TANPYRDGDLEAGIVIHELAHGLSIRLTGGPANSGCLGWGESGGMGEGWGDFLATTIRSNK---NYSDYAMGSWAANMEKGIRNYPYSLNQTINPS 626
                    **********************************************************987...478***************************** PP

                    -GGGG..GG--SHHHHHHHHHHHHHHHHHHHHHHH----................-EETT............EESSHHHHHHHHHHHHHHHS-SS- CS
                    xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx............xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36 267 tYkdlk.eelsevhaiGevWaeiLwevtwalidkhGfsa................dlkke............vpkeGnnlalqlvldglklqpcnp 333
                    tY++l+ ++++ vhaiGevWa+iLw v ++li+khGf++                d++++            vpk+Gn l++qlvl+g+klqpc+p
     CDO68520.1 627 TYATLDkPGYWGVHAIGEVWAQILWVVSQKLIEKHGFTEdlfppkpledgtipegDFYRKaeytsdgkrkplVPKHGNSLMVQLVLNGMKLQPCRP 722
                    ******99*******************************9***************5554455555667778999********************** PP

                    -HHHHHHHHHHHHHHHHSSTTHHHHHHHHHHTTBSTT- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36 334 tfvdaRdAilaAdealtggenkcliwkaFAkrGlGvsA 371
                    +f+daRdAi+aAd++ltggen c +w++FA+rGlGv+A
     CDO68520.1 723 SFFDARDAIIAADKTLTGGENFCDLWQGFASRGLGVDA 760
                    ************************************98 PP

>> FTP  Fungalysin/Thermolysin Propeptide Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   3.1   1.6e-19   7.4e-16       2      51 .]      78     128 ..      77     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.6e-19
                 EEEE-TT-EE-..TS-EEEEEEEEETTEEEEEEEEEEEE-TTSSEEEEEE-- CS
         FTP   2 efkvvkvetda..nGttHvryqQtynGipVfggdlvvhvdkdGkvtsvngsf 51 
                 +f+++k+++++  +G+tHv+ +Q++nGi+V++gd++v++ kdG v s++ sf
  CDO68520.1  78 DFVIRKDSYTDeaTGVTHVYVRQYVNGIEVADGDINVNI-KDGVVLSYGDSF 128
                 789998888888***************************.*********998 PP

>> Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.1   9.5e+03      59      86 ..     146     171 ..      97     185 .. 0.60
   2 ?   11.5   0.1   4.4e-05       0.2       7     100 ..     573     656 ..     572     666 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
  Peptidase_M4_C  59 nPssdgsspdhykkyvateednggvHln 86 
                     +P+  +++ +++++++a++ ++++vH +
      CDO68520.1 146 DPH--SEYCQSLETEIANQLQHLDVHKT 171
                     222..24455555556667777888864 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.4e-05
  Peptidase_M4_C   7 gesGAlnEslSDifgalveqyakkknadekdwliGeeivtpkskgdalRsmsnPssdgsspdhykkyvateednggvHlnSgilnkafyllaeg 100
                     gesG++ E++ D +++ +++       + +d+ +G  +      ++++R+  +  ++  +p++y +   ++  + gvH    +  +++++++++
      CDO68520.1 573 GESGGMGEGWGDFLATTIRSN-----KNYSDYAMGSWAAN---MEKGIRNYPYSLNQTINPSTYATL--DKPGYWGVHAIGEVWAQILWVVSQK 656
                     69****************332.....35789****98865...7799**999999989999999988..7899******999999999999987 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.1   0.00042       1.9       1      16 [.       1      16 [.       1      16 [. 0.98

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00042
      LPAM_1  1 MKKillalgalllLsG 16
                M+++++a++a++ L+G
  CDO68520.1  1 MRRLFVAALAAAGLAG 16
                ***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 6223.33
//
Query:       CDO68521.1  [L=441]
Description: hypothetical protein BN946_scf184998.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.8e-137  456.9   0.0   4.3e-137  456.7   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    2.1e-09   37.1   0.0    3.2e-09   36.5   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    2.4e-09   36.6   0.9    4.4e-08   32.5   0.1    2.6  3  Aminotran_5      Aminotransferase class-V
    9.9e-09   35.0   0.0    1.6e-08   34.2   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0089   15.3   0.0      0.015   14.6   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0096   14.5   0.4      0.018   13.6   0.4    1.5  1  Met_gamma_lyase  Methionine gamma-lyase
  ------ inclusion threshold ------
       0.13   11.6   0.0        2.6    7.4   0.0    2.4  2  AP_endonuc_2     Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.7   0.0  1.7e-140  4.3e-137       1     382 []      17     438 ..      17     438 .. 0.97

  Alignments for each domain:
  == domain 1  score: 456.7 bits;  conditional E-value: 1.7e-140
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TT CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea...fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaG 91 
                      eT+++hag e+d +t+a+a+piy++++++fkd++++   f+ +++g++YsR+gnpt++ +e+r+aaLegg aa+a+ssG aA+++ai a+++aG
       CDO68521.1  17 ETIQLHAGYEPDIATNARAPPIYASTSFVFKDSKHGadlFGLRTTGNIYSRMGNPTVNIFERRMAALEGGIAAVATSSGHAAQFMAIAAIARAG 110
                      699********************************99*9******************************************************* PP

                      EEEEEESTSSHHHHHHHH...HTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT.TT CS
  Cys_Met_Meta_PP  92 deivvsddlYggtqrllk...kvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfasp.ll 181
                      d++v+s++lYggt++++k    +lkk+ i++kfv+ +d++++++ai+e+tk +y+E+++np+  v+ ++++ak+a+++g++++vDntf  + +l
       CDO68521.1 111 DNLVTSSYLYGGTYNQFKgflVFLKKFDITMKFVQSEDPADFAAAIDEKTKGIYVESIGNPKNTVAPLPELAKVAHDNGIPLLVDNTFGMGgYL 204
                      ****************993334679***************************************************************7665** PP

                      S-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHH...............................HHHT-B--HHHHHHHHH CS
  Cys_Met_Meta_PP 182 qrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflq...............................nalGavlspfdawlllr 244
                      +rp++lgaDiv+hSaTK++gGh++v++Gv+++ g+++++k+ kf +                               ++lG++++pf a+lll 
       CDO68521.1 205 VRPIELGADIVTHSATKWVGGHGTVLGGVVIDGGRFDWAKSGKFPEftepaegyhgmrfvetfgdavfavkcrldvmRDLGPAMDPFPAFLLLM 298
                      ****************************************99988899********************************************** PP

                      HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSS..SG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEE CS
  Cys_Met_Meta_PP 245 GlkTLslRlerhqenAlkvAefLekhpkvekvyYpglpshpqhelakkqlk..gaggvlsFelkseeekakkfvdnlklfslaeslGgveslie 336
                      G++TLslR +rh+ nAl++A++Le+hpkv +v+Y gl+shp+h+ a + l+   +gg+l F +k+++e+ +k+vd++kl+s+++++G++++l++
       CDO68521.1 299 GIETLSLRAQRHSDNALALAKWLETHPKVAWVSYLGLKSHPSHKEALRLLRpnAFGGMLNFGIKGDAETGSKVVDAMKLASNLANVGDAKTLVI 392
                      ***********************************************9986226777************************************* PP

                      ETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 337 lpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqale 382
                      +pa++th+++++ee+ a+gvt+dliR+svGiE++ D+iaD+++al+
       CDO68521.1 393 HPATTTHQQLSAEEQVASGVTPDLIRVSVGIENISDIIADFENALK 438
                      ********************************************96 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.2e-12   3.2e-09      49     195 ..      76     203 ..      50     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.2e-12
                    HHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHC CS
  Aminotran_1_2  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeape 144
                    +e ++a + g          aav ++sG +a++ ++i+++ + +gd+ + ++  y+   n ++   + + ++ ++ +   + d  ++ +a++e   
     CDO68521.1  76 FERRMAALEG--------GIAAVATSSG-HAAQFMAIAAI-ARAGDNLVTSSYLYGGTYNQFKGFLVFLKKFDITMKFVQSEDPADFAAAIDE--- 158
                    5555555555........5656666666.56777777777.67******************************999999999***********... PP

                    TTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBS CS
  Aminotran_1_2 145 gnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvf 195
                       ktk+i+ves+ NP  tva+l+el k+   a+ +++ l+vD +++ + +
     CDO68521.1 159 ---KTKGIYVESIGNPKNTVAPLPELAKV---AHDNGIPLLVDNTFGMGGY 203
                    ...**************************...**************98877 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.047   1.2e+02      84     116 ..      82     113 ..      53     128 .. 0.79
   2 !   32.5   0.1   1.7e-11   4.4e-08     125     208 ..     145     228 ..     133     235 .. 0.93
   3 ?   -1.2   0.1       0.3   7.8e+02      93     156 ..     372     431 ..     364     440 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.047
                  C-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEE CS
  Aminotran_5  84 slkpgdeivvteaehhanlvpwqelakrtgakv 116
                  +l+ g  +v t+++h a++++++++a++ g ++
   CDO68521.1  82 ALEGGIAAVATSSGHAAQFMAIAAIARA-GDNL 113
                  388899999**************99954.5554 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.7e-11
                  SCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT- CS
  Aminotran_5 125 geldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgPtGi 208
                  ++ d+ +++++++ektk +++  + n   t+ p++e++k+a+++g+ +lvD + ++g + +   +lg+D+++ s+ K +g  G+
   CDO68521.1 145 QSEDPADFAAAIDEKTKGIYVESIGNPKNTVAPLPELAKVAHDNGIPLLVDNTFGMGGYLVRPIELGADIVTHSATKWVGGHGT 228
                  667899**************************************************************************9996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.3
                  EETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB- CS
  Aminotran_5  93 vteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiq 156
                  v ++   +nl   +++ +++++ ++ ++ +++++   +++++ ++++   v++  ++n++ +i 
   CDO68521.1 372 VDAMKLASNL---ANVGDAKTLVIHPATTTHQQLSAEEQVASGVTPDLIRVSVG-IENISDIIA 431
                  5666667777...77888889999999999999999999999998888777764.555555555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   6.4e-12   1.6e-08      21     150 ..      67     201 ..      57     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 6.4e-12
                      S..SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB.-GGGCGGG--TT CS
  DegT_DnrJ_EryC1  21 s..gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtyni.dpaaieaaiter 111
                      +  +p+v+ FE+++aa  g   a+a+ssG aA  +a+ a+    gd +++ s+ + +t n            D++ + ++  dpa+ +aai e+
       CDO68521.1  67 RmgNPTVNIFERRMAALEGGIAAVATSSGHAAQFMAIAAIARA-GDNLVTSSYLYGGTYNQFKGFLVFLKKFDITMKFVQSeDPADFAAAIDEK 159
                      456899*********************************8766.9***************99999888888999999887549*********** PP

                      EEEEEEB-GGGB....---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 112 tkaIlpVhlyGq....vadmdalkaiaakhglkvieDaAhAlG 150
                      tk+I  V+  G+    va +++l ++a++ g++++ D   ++G
       CDO68521.1 160 TKGIY-VESIGNpkntVAPLPELAKVAHDNGIPLLVDNTFGMG 201
                      ***96.5666652222578****************99776665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.7e-06     0.015      30     168 ..      69     196 ..      61     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.7e-06
                      --HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT..-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S CS
  Beta_elim_lyase  30 edktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtep..ahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikev 121
                      +++tvn +e ++a+l g  aa+ + +G aA  ++++++++ g++ + ++   + ++++  g +++l+    +++k  +    d+++++aai+e 
       CDO68521.1  69 GNPTVNIFERRMAALEGGIAAVATSSGHAAQFMAIAAIARAGDNLVTSSYlyGGTYNQFKGFLVFLKKFD-ITMKFVQ--SEDPADFAAAIDE- 158
                      799************************************9999998888866777777778888888773.3333333..559**********. PP

                      -TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEE CS
  Beta_elim_lyase 122 gaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDg 168
                           k+k i+++   n       +++ l e+a++a+++gipl++D 
       CDO68521.1 159 -----KTKGIYVESIGN----PKNTVAPLPELAKVAHDNGIPLLVDN 196
                      .....466777775555....3456888999999***********95 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   7.2e-06     0.018     124     244 ..     133     244 ..      44     261 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.2e-06
  Met_gamma_lyase 124 slkdfgikykevdlleegkvdieavkeaikektkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadli 217
                       lk+f+i+ k v+  +      +  ++ai ektk i +  s G  +     + e++++       ++ + ++vdn +G       P+e+Gad++
       CDO68521.1 133 FLKKFDITMKFVQSED-----PADFAAAIDEKTKGIYVE-SIGNPKNTVAPLPELAKVA-----HDNGIPLLVDNTFGMGGYLVRPIELGADIV 215
                      4566666666554433.....444556677777777764.6665554444444444332.....35567789********************** PP

  Met_gamma_lyase 218 aGsliknpGGgiaktGGyia..Gkeelve 244
                      + s  k +GG  +  GG ++  G+ ++ +
       CDO68521.1 216 THSATKWVGGHGTVLGGVVIdgGRFDWAK 244
                      **********9999999986445666655 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.067   1.7e+02     113     146 ..     178     213 ..     143     224 .. 0.82
   2 ?    7.4   0.0     0.001       2.6      47     100 ..     353     403 ..     339     434 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.067
                   HHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHH CS
  AP_endonuc_2 113 lneladyaekegvklalEtlagsgvelgd..eelar 146
                   l ela++a+++g+ l++ ++ g g +l +  e  a+
    CDO68521.1 178 LPELAKVAHDNGIPLLVDNTFGMGGYLVRpiELGAD 213
                   6799***************99999776656655555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
                   EEECCCHSTCTHC.HTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTS CS
  AP_endonuc_2  47 lslftrfgypded.erearreesvdalkraielaaaLGapllvlhpGtagagpkg 100
                   + ++ +fg  ++   ++++    vda+k a  la+  +a++lv+hp t ++++ +
    CDO68521.1 353 FGGMLNFGIKGDAeTGSKV----VDAMKLASNLANVGDAKTLVIHPATTTHQQLS 403
                   4455555554444456677....99999999999999**********64333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2863.59
//
Query:       CDO68522.1  [L=479]
Description: hypothetical protein BN946_scf184998.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     7e-142  472.5   0.0   8.1e-142  472.3   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.6e-10   40.8   0.1    5.3e-10   39.1   0.0    1.7  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    1.1e-09   38.0   0.0    2.1e-09   37.0   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
    2.4e-09   36.7   0.5    8.1e-09   34.9   0.1    1.9  2  Aminotran_5      Aminotransferase class-V
    0.00011   21.6   0.0    0.00021   20.6   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00026   19.7   0.0    0.00036   19.2   0.0    1.1  1  Met_gamma_lyase  Methionine gamma-lyase
  ------ inclusion threshold ------
      0.058   12.1   0.0       0.09   11.4   0.0    1.2  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas
       0.11   11.3   0.0       0.16   10.7   0.0    1.2  1  GDC-P            Glycine cleavage system P-protein


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.3   0.0  3.6e-145  8.1e-142       1     382 []      52     476 ..      52     476 .. 0.97

  Alignments for each domain:
  == domain 1  score: 472.3 bits;  conditional E-value: 3.6e-145
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TT CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea...fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaG 91 
                      eTl++hagqe+d++t+a+a+piy++++++f++++++   f+ ++ g++YsR+gnpt++v+e+riaaLegg+aa+a ssG++A+++ai a++kaG
       CDO68522.1  52 ETLQLHAGQEPDPATNARAPPIYASTSFVFNNSQHGadlFGLRALGNIYSRIGNPTVDVFEKRIAALEGGAAAVAASSGQSAQFMAIAAIAKAG 145
                      69*********************************99*9******************************************************* PP

                      EEEEEESTSSHH......HHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP  92 deivvsddlYgg......tqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfasp 179
                      d+iv++++lYgg      t++++k +lk++ i++kf++ s+++++++ai+e+tk++y+E+++np+++v  ++++ak+a+++g++++vDntf  +
       CDO68522.1 146 DNIVSTSYLYGGlllflkTYNQFKVFLKRFDIRIKFINSSEPQDFAAAIDEKTKAIYVESIGNPKYNVSPLPELAKVAHDHGIPLIVDNTFGMG 239
                      ***********8777777*************************************************************************766 PP

                      .TTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHH...............................HHHT-B--HHHHHH CS
  Cys_Met_Meta_PP 180 .llqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflq...............................nalGavlspfdawl 241
                       +l+rp+++gaDivvhSaTK++gGh+++++Gv++++gk++++k+ +f                                 ++lG++l+pf a+l
       CDO68522.1 240 gYLVRPIEHGADIVVHSATKWIGGHGTTIGGVVIDSGKFDWAKSGRFPDftepsegyhglkfsetfgpvafavkvrvevlRDLGSALNPFGAFL 333
                      5******************************************99887799******************************************* PP

                      HHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSS..SG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS- CS
  Cys_Met_Meta_PP 242 llrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglpshpqhelakkqlk..gaggvlsFelkseeekakkfvdnlklfslaeslGgves 333
                      ll+Gl+TLslR +rh+ nAl +A++Lekhpkv +v+Y gl+sh +h+ a + l+   +gg+lsF +k++++  +++vd+l+l+s+++++G++++
       CDO68522.1 334 LLQGLETLSLRAQRHSDNALLLAQWLEKHPKVAWVSYLGLESHTHHKEALRLLRpnAFGGMLSFGVKGDAKVGSEVVDRLRLASNLANVGDAKT 427
                      **************************************************9986226777********************************** PP

                      EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 334 lielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqale 382
                      l+++pa++th+++++ee+ a+gvt+dliR+svGiE++ D+iaD+++al+
       CDO68522.1 428 LVIHPATTTHQQLTDEEQLASGVTPDLIRVSVGIENIADIIADFDHALK 476
                      ***********************************************96 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   2.4e-13   5.3e-10      21     150 ..     102     239 ..      94     266 .. 0.86
   2 ?   -1.4   0.0       0.5   1.1e+03     222     276 ..     326     379 ..     316     388 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2.4e-13
                      S..SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE...-B-TTTSSB.-GGGCGGG- CS
  DegT_DnrJ_EryC1  21 s..gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfv...Dvdpdtyni.dpaaieaai 108
                      +  +p+v+ FEk++aa  g + a+a ssG +A  +a+ a+    gd ++ +s+ + +        +   vf+   D+ ++ +n  +p++ +aai
       CDO68522.1 102 RigNPTVDVFEKRIAALEGGAAAVAASSGQSAQFMAIAAIAKA-GDNIVSTSYLYGGLLLFLKTYNQFKVFLkrfDIRIKFINSsEPQDFAAAI 194
                      344899********************************98654.9*************************966669****9996269******* PP

                      -TTEEEEEEB-GGG....B---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 109 tertkaIlpVhlyG....qvadmdalkaiaakhglkvieDaAhAlG 150
                       e+tkaI  V+  G    +v+ +++l ++a++hg+++i D   ++G
       CDO68522.1 195 DEKTKAIY-VESIGnpkyNVSPLPELAKVAHDHGIPLIVDNTFGMG 239
                      ******96.666661333457899****************876666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.5
                      -BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEES CS
  DegT_DnrJ_EryC1 222 lteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawh 276
                      l+ + A ++l+ Le l+   +r  ++a l+ + L++ +++a +     ++ h  h
       CDO68522.1 326 LNPFGAFLLLQGLETLSLRAQRHSDNALLLAQWLEKHPKVAWVSYLGLES-HTHH 379
                      677889999999**********************9999877666555555.5555 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   9.4e-13   2.1e-09      40     237 ..     103     275 ..      85     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 9.4e-13
                    T-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHH.TTSE..EEEEEBEETTTTEE-H CS
  Aminotran_1_2  40 ygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrl.sgge..vvryplyseedfhldl 132
                    +g+++  + +e+++a + g          aav  +sG + ++ ++i+++ + +gd+i++ +  y+     l+  ++++  + r+ ++ +   +   
     CDO68522.1 103 IGNPT-VDVFEKRIAALEG--------GAAAVAASSGQS-AQFMAIAAI-AKAGDNIVSTSYLYGGLLLFLKTyNQFKvfLKRFDIRIKFINSSEP 187
                    55555.6789999999999........554666666655.666777777.67*******9998887777776414555222333333333336678 PP

                    HHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG CS
  Aminotran_1_2 133 ealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGe 228
                    +++ +a++e      ktk i+ves+ NP   v +l+el k+   a+ +++ l+vD +++ + +        +  +e++ + ++v s  K  G  G 
     CDO68522.1 188 QDFAAAIDE------KTKAIYVESIGNPKYNVSPLPELAKV---AHDHGIPLIVDNTFGMGGYL-------VRPIEHGAD-IVVHSATKWIGGHGT 266
                    999999999......**************************...*****************997.......666777766.*************** PP

                    -EEEEEEEH CS
  Aminotran_1_2 229 RvGyilgna 237
                     +G +++++
     CDO68522.1 267 TIGGVVIDS 275
                    ****99987 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   3.6e-12   8.1e-09      85     210 ..     142     268 ..     111     275 .. 0.80
   2 ?   -0.9   0.0      0.27   5.9e+02     106     145 ..     420     459 ..     408     476 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.6e-12
                  -TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEE..EBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTT CS
  Aminotran_5  85 lkpgdeivvteaehhanlvpwqelakrtgakvkvi..pldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqav 180
                   k+gd+iv t+  + + l+  +  + + ++ +k +  +++   + ++++++++++ektk++++  + n   ++ p++e++k+a+++g+ ++vD + ++
   CDO68522.1 142 AKAGDNIVSTSYLYGGLLLFLKTYN-QFKVFLKRFdiRIKFINSSEPQDFAAAIDEKTKAIYVESIGNPKYNVSPLPELAKVAHDHGIPLIVDNTFGM 238
                  5777777777777777665555444.556666554113344456779*************************************************** PP

                  TTS---HHHHTESEEEEETTTTTSSTT-EE CS
  Aminotran_5 181 ghipidvkklgvDflafsghKllgPtGiGv 210
                  g + +   + g+D+++ s+ K +g  G+++
   CDO68522.1 239 GGYLVRPIEHGADIVVHSATKWIGGHGTTI 268
                  ***************************986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.27
                  HHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEE CS
  Aminotran_5 106 qelakrtgakvkvipldeegeldldelekllnektklvai 145
                  +++ +++++ ++ ++ +++++ d ++l++ ++++   v++
   CDO68522.1 420 ANVGDAKTLVIHPATTTHQQLTDEEQLASGVTPDLIRVSV 459
                  6778888999999999999999999999999998777765 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.6e-08   0.00021      30     273 ..     104     362 ..      96     376 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.6e-08
                      --HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT...-HHHHSST.THHHHC.C--EEEEE-EBTTTBE-HHHHHHHS CS
  Beta_elim_lyase  30 edktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtep...ahihfdet.gaiael.agvklrdlknkeaGkmdlekleaai 118
                      +++tv ++e+++a+l g +aa+ + +G  A  ++++++++ g++++ t+    +   f  t  + +++ +     d+++k  +  ++++++aai
       CDO68522.1 104 GNPTVDVFEKRIAALEGGAAAVAASSGQSAQFMAIAAIAKAGDNIVSTSYlygGLLLFLKTyNQFKVFlKR---FDIRIKFINSSEPQDFAAAI 194
                      689*******************************************9999876444444432666655233...466666667899******** PP

                      --S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSS...TT--SS-EEEE CS
  Beta_elim_lyase 119 kevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkK...dllanvGgvla 209
                      +e      k+k+i+++   n      + +  l e+a++a+++gipl++D     n     g  v+ +  ++D+v+ s++K   + ++ +Ggv++
       CDO68522.1 195 DE------KTKAIYVESIGN----PKYNVSPLPELAKVAHDHGIPLIVD-----NTFGMGGYLVRPIEHGADIVVHSATKwigGHGTTIGGVVI 273
                      **......699****98777....58***********************.....667889999*****************77667799****99 PP

                      E-HH.................................HHHHHHHHHHHHT---SSTH.HHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHHC CS
  Beta_elim_lyase 210 frddel.............................edylaerveqrkylggglrqag.vlaaleagiraleeglaslerdhktaeqlaeklelv 273
                       + +                                  ++ rve+ + lg+ l+  g +l     g   le  + +++r+ ++a  la+ le++
       CDO68522.1 274 DSGKFDwaksgrfpdftepsegyhglkfsetfgpvAFAVKVRVEVLRDLGSALNPFGaFLLL--QG---LETLSLRAQRHSDNALLLAQWLEKH 362
                      88884478999999999999999999999998887455688999999999999988744444..44...4555556777777777777666655 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.6e-07   0.00036      50     243 ..      98     281 ..      81     298 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.6e-07
  Met_gamma_lyase  50 yGyddlGrdtldkvyaevfgaeaalvrpqlvsGthaiatalfgvlrpgdellaitGkPydtleeviGlrgegqgslkdfgikykevdlleegkv 143
                        y  +G  t+d    ++   e ++  +   sG  a  +a+ ++ + gd++++ t   y  l   + + ++ +  lk f+i+ k ++  e    
       CDO68522.1  98 NIYSRIGNPTVDVFEKRIAALEGGAAAVAASSGQSAQFMAIAAIAKAGDNIVS-TSYLYGGLLLFLKTYNQFKVFLKRFDIRIKFINSSE---- 186
                      55777888888877777777788888888899999*99************998.56789**********************999998777.... PP

  Met_gamma_lyase 144 dieavkeaikektkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyia 237
                        +  ++ai ektk i +  s G    + ++++ + e+ k+ +  ++ + + vdn +G       P+e Gad++  s  k +GG  +++GG ++
       CDO68522.1 187 -PQDFAAAIDEKTKAIYVE-SIGN---PKYNVSPLPELAKVAH--DHGIPLIVDNTFGMGGYLVRPIEHGADIVVHSATKWIGGHGTTIGGVVI 273
                      .5677899********996.7885...5667777777766655..45677789**************************************996 PP

  Met_gamma_lyase 238 ..Gkeelv 243
                        Gk ++ 
       CDO68522.1 274 dsGKFDWA 281
                      33666665 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     4e-05      0.09     164     208 ..     206     249 ..     183     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
                 STTTTB----HHHHHHHHHCCT--EEEEGCCCCT-HHHHHHHHHH CS
     SepSecS 164 sffaprspDdvkeiakiCaeydvPhlvNgAYaiqsekyieklkka 208
                  +++     +++e+ak+ +++++P++v + +++   + ++ ++++
  CDO68522.1 206 IGNPKYNVSPLPELAKVAHDHGIPLIVDNTFGM-GGYLVRPIEHG 249
                 45555555679*********************9.55555555554 PP

>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.3e-05      0.16     145     259 ..     136     259 ..     116     270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.3e-05
                 HHHHH-SSS--EEEEETTS-HHHHHHHHHH......HGGGT-EEEEE-GGG--S-.....S-EEEEEEEE.S-TTSB----HHHHHHHHHTT-EEEEEE CS
       GDC-P 145 laaraskkkakkvvvdkkvhpqtlevlktr......akglgieivevdlteekvtd..kekevagvlvqy.pnteGriedlkelvekakkkkslvvvaa 234
                 +a +a  k  +++v  + ++   l  lkt+       k ++i i   +++e +       +++ ++ v    n + ++ +l el++ a+++ + ++v  
  CDO68522.1 136 MAIAAIAKAGDNIVSTSYLYGGLLLFLKTYnqfkvfLKRFDIRIKFINSSEPQDFAaaIDEKTKAIYVESiGNPKYNVSPLPELAKVAHDHGIPLIVDN 234
                 55555555555666666665555555555511111156667766655544433322346788999988761567899********************98 PP

                 -TTGGGTB--HHHHT-SEEEEE-TT CS
       GDC-P 235 dllaLtllkpPgelgaDivvGsaqr 259
                      + l  P e gaDivv sa +
  CDO68522.1 235 TFGMGGYLVRPIEHGADIVVHSATK 259
                 8888889999**********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3711.94
//
Query:       CDO68523.1  [L=994]
Description: hypothetical protein BN946_scf184998.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   15.1   0.1         23    5.8   0.0    3.6  3  dsrm      Double-stranded RNA binding motif


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.36   6.5e+03       2      20 ..      84     105 ..      83     124 .. 0.61
   2 ?    4.9   0.0    0.0024        43      40      65 ..     238     264 ..     221     265 .. 0.78
   3 ?    5.8   0.0    0.0013        23       2      67 .]     912     979 ..     909     979 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.36
                 HHHHHH.HHHHTT..SEEEEEE CS
        dsrm   2 KskLqe.ycqkkg..kppnyey 20 
                 + +L++ + q +g    +++e+
  CDO68523.1  84 IARLHQaCQQTFGntAALKFEF 105
                 6789995555555554444444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0024
                 TTEEEEEEEES.SHHHHHHHHHHHHHH CS
        dsrm  40 ngklygsGvgs.nKKeAeqsAAedale 65 
                 n ++++ G+   +  eA++++Ae+al 
  CDO68523.1 238 NSRVWSVGTVYnSPAEAKKACAEAALA 264
                 667788888873669**********96 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEES.SHHHHHHHHHHHHHHHH CS
        dsrm   2 KskLqeycqkkg.kppnyeyvseegpphslpkFvvtvkvngklygsGvgs.nKKeAeqsAAedalekL 67 
                 +  L+  c+  g ++p++++ +++ ++  +pk  v v+++++++   v   +  + + + A+++l +L
  CDO68523.1 912 VAALYDHCRNAGmPDPEFRSEIVQDGRADEPKHNVWVIIGKTKFELPVTFsSLSQGQEKVAKKVLDQL 979
                 66899**********************************99999855553367777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 6206.06
//
Query:       CDO68524.1  [L=290]
Description: hypothetical protein BN946_scf184998.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-13   51.2   0.1    2.6e-13   50.7   0.1    1.1  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   1.4e-17   2.6e-13       1     200 [.       9     217 ..       9     225 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.4e-17
                 HHHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTH.............HHHHHHHHHHHTSCEEEE CS
        PhyH   1 feedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhp.............rkvadlvrailgqdvyva 86 
                 ++++Gy+v++g+++ae +e+l a++ +   ++++sg+  +    ++++  + +    +   v+h+ hp               ++++v+++lg+++ + 
  CDO68524.1   9 YDDHGYVVVPGLVPAEHLEELEAACVRA-IARTRSGEWPHRRTVGRQFPPYGDGD-PDSWGVQHVMHPdlgepafarrytsDALVSIVKELLGCEEND- 104
                 789**********************997.78888888777888888888855554.8999****************9777777777777777777765. PP

                 EEEEEEEEE.EEE-TTTCB-E..EEEE-SGGGST.EES.GCCEEEEEEESS-...B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS..CCCTTTGH CS
        PhyH  87 avlqsmyqd.ifkqpkiGgev..qpwHqDstflp.tdp.eesvvgvwialed...ateenGclrfiPGSHkweegplrrrlpeddteae..ddeakked 175
                   lq ++ +  +++ +    +   +wH+D+   + t++ e+++++vw + +    a ++  cl ++PGSHk ++       +e+++++   d +++  +
  CDO68524.1 105 --LQMELFNlLINPTSN---SfaLRWHRDDVPENaTEEeEREALSVWHHGTQwntALRKDSCLYVVPGSHKVPRT------TEQRAHSStlDPPQDPLA 192
                 ..666663434444433...3347******9999655599*****99887651116689*************555......444444445667889999 PP

                 GSCEEEE.BTTTEEEEEETTSEEEE CS
        PhyH 176 eeeavpvevkaGdavlfhgrllHgs 200
                   +av+v++++G++v+++ ++lH +
  CDO68524.1 193 MPGAVQVTLQPGETVFYNNNILHCA 217
                 99*********************77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2083.50
//
Query:       CDO68525.1  [L=232]
Description: hypothetical protein BN946_scf184998.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-50  169.7   0.0    4.4e-50  169.4   0.0    1.0  1  Ras          Ras family
    5.9e-30  103.9   0.0    8.8e-30  103.4   0.0    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    2.3e-12   46.7   0.0    2.5e-12   46.6   0.0    1.2  1  Arf          ADP-ribosylation factor family
    9.2e-07   28.4   0.0    1.1e-06   28.2   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    4.5e-06   26.7   0.0    8.4e-06   25.9   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0073   15.9   0.1      0.021   14.4   0.0    1.9  1  GTP_EFTU     Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.041   13.3   0.0    1.3  1  TniB         Bacterial TniB protein
      0.027   13.6   0.6        1.6    7.8   0.1    2.1  2  G-alpha      G-protein alpha subunit
      0.028   13.7   0.0      0.042   13.1   0.0    1.2  1  Septin       Septin
      0.029   14.8   0.0      0.048   14.0   0.0    1.5  1  AAA_16       AAA ATPase domain
      0.029   13.8   0.0      0.045   13.2   0.0    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
       0.14   12.1   0.1       0.48   10.3   0.1    1.8  2  RsgA_GTPase  RsgA GTPase
       0.17   11.7   0.0       0.34   10.7   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.0   3.2e-53   4.4e-50       1     161 [.      15     179 ..      15     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 3.2e-53
                 EEEEEESTTSSHHHHHHHHHHSSC..SSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkF..keeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveei 97 
                 Kl+l+G+s+vGK+slllrf ++++  ++e+ +Tigvdf ++++e++gk+vkl+iwDTAGqe+f++++++yyr+a+gi+lvyd+ +resfe + kw++e+
  CDO68525.1  15 KLLLIGNSSVGKSSLLLRFSDEQWlpEDESSATIGVDFRVHKMEMKGKKVKLSIWDTAGQERFRTITSSYYRGAQGIILVYDVANRESFEALPKWFSEL 113
                 89*********************954567889******************************************************************* PP

                 HHHSTTTSEEEEEEE.TTTGGG.G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  98 krvaeenvpivLvGn.KvDlee.kravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +++++ +v+ ++v    + ++e +r+v t+ege++ak++g+ f+e+SAkt+ +veeaf +++++i 
  CDO68525.1 114 ETYVSGSVVKIIVESpDTAIQEySRQVPTTEGEAFAKRMGALFIEASAKTAVGVEEAFRDVVERII 179
                 *****6666666654144444479*************************************99885 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   6.4e-33   8.8e-30       1     115 [.      15     126 ..      15     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 6.4e-33
                 EEEEESSTTSSHHHHHHCHCT-CC..C-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkf..sekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssen 94 
                 K++l+G+s+vGK+sll rf +++   ++++++tigvdf  +++ ++kg       kkvkl+iWDtaGqerfr+++++y+r+a+ +ilvyd   ++s+e 
  CDO68525.1  15 KLLLIGNSSVGKSSLLLRFSDEQWlpEDESSATIGVDFRVHKM-EMKG-------KKVKLSIWDTAGQERFRTITSSYYRGAQGIILVYDvanRESFEA 105
                 89*********************955566889******99886.4444.......6899*******************************875557799 PP

                 HHHHHHHHHHHCSSS-EEEEE CS
         Roc  95 lkeWlkelkkvagkspvilvg 115
                 l +W++el+++++ s+v +++
  CDO68525.1 106 LPKWFSELETYVSGSVVKIIV 126
                 ***********9988775443 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.8e-15   2.5e-12      13     107 ..      12     113 ..       1     177 [. 0.83

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.8e-15
                 TEEEEEEEESTTSSHHHHHHHHHHSSC...EECSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklkleel...vttvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                  ++++ll+G  + GK+ +l ++++e+    ++ + Tig  f v+++e+  k++k+++wD  Gqe+ R + ++Y++  +++i v D+a+re +e   + +
  CDO68525.1  12 INVKLLLIGNSSVGKSSLLLRFSDEQWlpeDESSATIGvdFRVHKMEMkgKKVKLSIWDTAGQERFRTITSSYYRGAQGIILVYDVANRESFEALPKWF 110
                 579*******************999862224577887644789998885579**************************************998876655 PP

                 HHH CS
         Arf 105 kal 107
                 ++l
  CDO68525.1 111 SEL 113
                 555 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   7.8e-10   1.1e-06       1     131 [.      15     139 ..      15     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.8e-10
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFd.nylardtlrlgatidveksevrflg.nltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedlet 97 
                 k+LL+G+s+ GK+s+     d + l++d  + ++ +d + +++++ g +++l++wD  Gqe+f + +     ++ +r  + +i V Dv     +e++e 
  CDO68525.1  15 KLLLIGNSSVGKSSLLLRFSDeQWLPEDESSATIGVDFRVHKMEMKGkKVKLSIWDTAGQERFRTIT-----SSYYRGAQGIILVYDVA---NRESFEA 105
                 89************98776542689****999999999999999986269************98875.....7789999*********9...5677888 PP

   Gtr1_RagA  98 lkeilealrqyspeakvfvlihKmDliqederee 131
                 l + +++l +y     v++++   D   ++  ++
  CDO68525.1 106 LPKWFSELETYVSGSVVKIIVESPDTAIQEYSRQ 139
                 8888899999999999999988888755555444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.1e-09   8.4e-06       2      87 ..      16     100 ..      15     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.1e-09
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.T CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk....lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.e 87 
                  +++G++ vGKS+L+ + ++e+   +d+  +T+ + ++  k     k+ ++ ++Dt+G  e   + + ++ ++ +   a+ i+lv d++ +
  CDO68525.1  16 LLLIGNSSVGKSSLLLRFSDEQWLPEDESSATIGVDFRVHKmemkGKKVKLSIWDTAG-QE---RFRTITSSYYR--GAQGIILVYDVAnR 100
                 579******************8888888888877755533333324457899******.44...23355555553..48899999997631 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-05     0.021      48     104 ..      42      98 ..      32     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                 HHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU  48 eErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 +E    i ++  + ++e ++kk ++++ Dt G + F   ++  +r + g +lv d++
  CDO68525.1  42 DESSATIGVDFRVHKMEMKGKKVKLSIWDTAGQERFRTITSSYYRGAQGIILVYDVA 98 
                 5667777778888888888**********************************9986 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05     0.041      36      78 ..      14      60 ..       1      70 [. 0.65

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
        TniB 36 pnlllvGdsnnGKtmivekFarlh.ppekdedae...kvpvlvvqap 78
                 +lll+G+s +GK++++ +F++++  pe++++a+    ++v  +++ 
  CDO68525.1 14 VKLLLIGNSSVGKSSLLLRFSDEQwLPEDESSATigvDFRVHKMEMK 60
                569******************99943333333322224455555554 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0012       1.6      21      42 ..      11      32 ..       2      39 .. 0.77
   2 ?    4.7   0.1     0.011        15     188     233 ..      49      95 ..      30     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                ..EEEEEEEESTTSSHHHHHHH CS
     G-alpha 21 krevkllllGqseSGKsTilkq 42
                  +vklll+G+s+ GKs++l  
  CDO68525.1 11 PINVKLLLIGNSSVGKSSLLLR 32
                4469**************9865 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
                 --SEEEEEEEC.T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEE CS
     G-alpha 188 tvGisetkfev.dsklefrivdvgGqrserkkWvpffddvdaiiFlv 233
                  v +  +k+e+ ++k+++ i+d++Gq   r    +++ +++ ii + 
  CDO68525.1  49 GVDFRVHKMEMkGKKVKLSIWDTAGQERFRTITSSYYRGAQGIILVY 95 
                 344556677778779************99999999999999998775 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     3e-05     0.042       3      71 ..      12      73 ..      10      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
                EEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  3 ieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                i++ l+++G+s++Gk++l+  +  ++  +e+       +++ t+ ++ + +++e +g k++l + Dt g
  CDO68525.1 12 INVKLLLIGNSSVGKSSLLLRFSDEQWLPED-------ESSATIGVDFRVHKMEMKGKKVKLSIWDTAG 73
                67899************99887777766664.......4556777777777788888899999***988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.5e-05     0.048      27     107 ..      16     136 ..       2     184 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
      AAA_16  27 vllsGesGvGKsslvrellr.alekd..ggiflrgkcdqlesa........ipysalaqalareellrqllde.................aesaeleaw 97 
                 +ll+G+s vGKssl+ ++ + ++  +     ++  +++ ++++             +++++ + e +r + +                  ++  +l+ w
  CDO68525.1  16 LLLIGNSSVGKSSLLLRFSDeQWLPEdeSSATIGVDFRVHKMEmkgkkvklS----IWDTAGQ-ERFRTITSSyyrgaqgiilvydvanrESFEALPKW 109
                 89*************7777535555554244455555555333333332220....3333322.33333333333333333333333333777777777 PP

      AAA_16  98 rekleeala.................a 107
                   +le+ ++                  
  CDO68525.1 110 FSELETYVSgsvvkiivespdtaiqeY 136
                 777777777666666666655555552 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.3e-05     0.045       5      85 ..      15      97 ..      12     105 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
                EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEET CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv....ksekgskltliDfPGheklrqklleklkaksslkglvfvvDS 85
                ++ll+G s  GK sl+ r + ++  +   S     +  +v     + k+ kl + D  G+e++r+  + +    + ++g++ v D 
  CDO68525.1 15 KLLLIGNSSVGKSSLLLRFSDEQWLPEDESSaTIGVDFRVhkmeMKGKKVKLSIWDTAGQERFRTITSSY---YRGAQGIILVYDV 97
                589******************9666555544222222222322334566677789*********865554...7889999999886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00035      0.48     102     123 ..      16      37 ..       2      63 .. 0.81
   2 ?   -1.2   0.0       1.2   1.7e+03      57     104 ..      70     117 ..      54     121 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
                  EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpel 123
                   +l+G+S vGKS+L+ ++  e+
   CDO68525.1  16 LLLIGNSSVGKSSLLLRFSDEQ 37 
                  579***********98887765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                  GG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEE CS
  RsgA_GTPase  57 Dlleeeeeleelkeelealgyevllvsaktkegleelkellkdktsvl 104
                  D + +e+  + +++ ++ ++  +l+ ++ ++e++e+l +++++  + +
   CDO68525.1  70 DTAGQERFRTITSSYYRGAQGIILVYDVANRESFEALPKWFSELETYV 117
                  555555533334455677777788888999999999999988855555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00025      0.34      17      39 ..      10      30 ..       3      31 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                ++i++k   ll+G+s +GKS+ll
  CDO68525.1 10 APINVK--LLLIGNSSVGKSSLL 30
                555544..7************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1623.71
//
Query:       CDO68526.1  [L=534]
Description: hypothetical protein BN946_scf184998.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-15   56.3  15.5    9.4e-06   25.6   0.1    3.6  4  Na_Ca_ex  Sodium/calcium exchanger protein
  ------ inclusion threshold ------
       0.02   14.8   0.3      0.081   12.9   0.3    2.0  1  TMEM251   Transmembrane protein 251


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.44     4e+03       3      23 ..      47      67 ..      46      70 .. 0.78
   2 !   23.4   1.9   5.1e-09   4.6e-05       6     126 ..      74     189 ..      72     237 .. 0.77
   3 !   25.6   0.1   1.1e-09   9.4e-06       2      62 ..     319     379 ..     318     386 .. 0.93
   4 !   16.2   0.1   8.6e-07    0.0077      76     149 ..     432     500 ..     396     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.44
                HHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  3 fvlfilslllisvladflvss 23
                ++ ++l+++  ++++++lv+s
  CDO68526.1 47 WLSILLIFIPFAWASHWLVDS 67
                566788888888999999876 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 5.1e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHHHH CS
    Na_Ca_ex   6 filslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkldlg 104
                 f+l+++ i++l +++  + e++a   +  g+ lG ++  ++ +  E ++++i +++ + +l  ++++G++++ lllv G+ +lig+ + ++++   d+ 
  CDO68526.1  74 FVLCFISIIPLQNIFEVCGEQLA---EHAGADLGEFICITFKNCVEATLALILLRKCHLRLLQSTIVGVVVLHLLLVQGMTFLIGGSQTRKQT-LHDHH 168
                 899********************...8999999999999***********************************************5555555.44445 PP

                 HHHHHHHHHHHHHHHTCHHHHH CS
    Na_Ca_ex 105 llllvallllllvlllllplfv 126
                 + +  +ll+++++++ +lp+++
  CDO68526.1 169 VAVNPSLLMVGVLST-VLPTAF 189
                 555555555443333.444433 PP

  == domain 3  score: 25.6 bits;  conditional E-value: 1.1e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltg 62 
                 l++++++s++++ v+a+flv+s++ + +  gi  + +Gl+ll+l++ lpE ++++i  +t+
  CDO68526.1 319 LTLCIVISIAVMCVTAEFLVESIDPVRERSGIQAEWFGLVLLPLVSFLPEAALALIGFITK 379
                 6899************************9**************************988875 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 8.6e-07
                 HHHHHTHHHHHHHHHHBTTSSCECCHHH.HHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  76 ifnlllviGlialigslkvdseslkldl.gllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 i+ +l  +++i+lig+++ ++  l +d  ++ l++  ++l+ +++        g+ ++ eg++++++Ya+ +   
  CDO68526.1 432 IQFTLWWMPVIVLIGWWTGRPMHLLFDYyEVALMLGTCFLVNYVTAD------GQTNIAEGFTMFIFYAMLATAT 500
                 556677789*******9999999999998888888888887777766......****************988765 PP

>> TMEM251  Transmembrane protein 251
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     9e-06     0.081      35      79 ..      16      58 ..      10      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-06
     TMEM251 35 rlalehvqkaassepselswsqtlkakllalpfwlwalilllpyl 79
                 la+e+ +k +s++p +lsw+q+  + ll+ p wl +l++++p+ 
  CDO68526.1 16 SLAVEEKRKGKSNDPLDLSWKQR--CLLLMKPWWLSILLIFIPFA 58
                589999999************97..579999************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3755.12
//
Query:       CDO68527.1  [L=388]
Description: hypothetical protein BN946_scf184998.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-15   56.6  23.2    6.1e-09   36.0  11.5    2.2  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   3.8     3e-10   5.4e-06      42     144 ..      13     143 ..       6     148 .. 0.76
   2 !   36.0  11.5   3.4e-13   6.1e-09       3     150 ..     188     342 ..     186     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3e-10
                 HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH.......BTTSSCECCHHH.HHHHHHHHHHHHHHHHTCHHHHH...... CS
    Na_Ca_ex  42 llAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs.......lkvdseslkldl.gllllvallllllvlllllplfv...... 126
                 l+ + n++ E +++ii +++ e  l  ++++G++i+ lll+ G+++l+g+       l +++++l+ +l  + +l++          llp+++      
  CDO68527.1  13 LIITLNNAVEAVLAIILLAKCELALLQSTIVGVVILHLLLIPGTSFLVGGynirqqmLHPHHSELNHSLlMIGVLAT----------LLPTAFfaaldr 101
                 555789*******************************************9544444333333334444423333333..........333333344455 PP

                 ........................HTEEHHHHHHHHHHHHHH CS
    Na_Ca_ex 127 ........................pgrltvleglvllllYal 144
                                           ++++  +++ll +Y++
  CDO68527.1 102 gasavaaagseagsslvndttrdqLLQMSRGIAIMLLTVYVA 143
                 68899****************999999***********9986 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 3.4e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT.......TT.....HHHHHHHHHHHHHHHHHTHHHHHHHH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaalt.......ge.....vdlaignvlGsnifnlllviGliali 89 
                 ++l+++ + l++v+a+flv+s++e+ ++ +i  + +G++ll++++ + + ++++i+  +       g        la+g ++   i+ +l  +++ +l+
  CDO68527.1 188 MLLLVVTVGLMAVTAEFLVESIDEVREKSNIQVEWFGMILLPIVSFSADGAVAVIFFFQsiydhltGReilvpNMLARGRAIDLSIQFTLWWMPFLVLL 286
                 578999999*************************************************767766665568888899*********************** PP

                 HHBTTSSCECCHHH.HHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  90 gslkvdseslkldl.gllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 g++++++  l++d  ++ ll+  ++l+ +++       + + +++egl+++++Y++++++ +
  CDO68527.1 287 GWWTNKPMHLMFDYfEVALLLGSCFLVNYVTA------DSKTNWVEGLIMVIFYLMIALVTW 342
                 *******9999999555555555555544443......4*****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2769.05
//
Query:       CDO68528.1  [L=259]
Description: hypothetical protein BN946_scf184998.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-12   45.2   0.0    1.1e-11   44.8   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    6.9e-07   29.8   0.0    1.9e-06   28.4   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    9.5e-06   26.2   0.0    2.1e-05   25.1   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      6e-05   23.7   0.0    0.00024   21.8   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
    0.00071   19.4   0.0     0.0037   17.1   0.0    1.9  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.23   10.9   0.0    1.3  1  FBPase           Fructose-1-6-bisphosphatase, N-terminal doma


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.8e-15   1.1e-11      21     130 ..      72     203 ..      55     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 3.8e-15
  Methyltransf_23  21 raggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.........................kfdlIvl 88 
                      +a g vLd+G+G+G++l +l + +++++++ +++  +++++++   ++   +         g                         + d+I++
       CDO68528.1  72 NACGVVLDLGAGHGHTLLYLdSSKVTKYVALEPNQLMHGEIRTLAASKGFTE---------GtgtllilpygaedislitsalggshTVDTIIS 156
                      56679***************777788**************974444444333.........22355555555556666666666676******* PP

  Methyltransf_23  89 revlehvpdppellrqiat.llkpgGylllseplasl....kedrll 130
                      + +++++p p+++++++ +  lkpgG ll+ e+  s+    ++ +++
       CDO68528.1 157 ILTICSIPEPERTIATLVEqVLKPGGTLLFYEHVLSHrpdvAWWQRF 203
                      ****************9875899*********988886666344443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.3e-10   1.9e-06       1      96 []      78     186 ..      78     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 6.3e-10
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-........EEEETTEECCCT..SS-T.T-EEEEEEES-CCC-CCHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl........kvefvvadaekl..pfed.nsfDlvvssevlhhvedpekalk 82 
                      Ld+G+G G  + +l +   +++v++++++ m+   ++ a  +g+         + +  +d++ +   +   +++D ++s  +++ +++pe++++
       CDO68528.1  78 LDLGAGHGHTLLYLDSSKvTKYVALEPNQLMHGEIRTLAASKGFtegtgtllILPYGAEDISLItsALGGsHTVDTIISILTICSIPEPERTIA 171
                      8**************5555*************7777777777766666977756667777774321344327*******************999 PP

                      HH.HHHEEEEEEEEE CS
  Methyltransf_11  83 ei.aRvLkpgGllvi 96 
                       +  +vLkpgG+l++
       CDO68528.1 172 TLvEQVLKPGGTLLF 186
                      86269*******986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   7.1e-09   2.1e-05       1      97 []      77     182 ..      77     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7.1e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.....TEEEEESBCCGBSS......STTTEEEEEEESTGGGSSHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.....nvefvqgdaedlpf......edgsfDlvvssgalhhlsdedle 83 
                      vLdlG+G+G+++l+l    +  k++++++++ m  ++r+ a+++g+      + ++   aed+++       ++++D ++s+ +++ +++++ +
       CDO68528.1  77 VLDLGAGHGHTLLYLDSS-KVTKYVALEPNQLMHGEIRTLAASKGFtegtgTLLILPYGAEDISLitsalgGSHTVDTIISILTICSIPEPE-R 168
                      9***************99.68********************998888886655556666677663333444788*******98888899887.6 PP

                      HHHHHHHHHEEEEE CS
  Methyltransf_25  84 kalkeiarvLkpgG 97 
                      ++   + +vLkpgG
       CDO68528.1 169 TIATLVEQVLKPGG 182
                      78899999*****9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     8e-08   0.00024       1      99 []      78     184 ..      78     184 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai......edakeklakrennnnnnvelealdlldldgg...........ssfDlvvasnvlh 77 
                      L++G+G G++l +l  + + ++y+++++++ +       ++ k  +   + +    +  e                     +++D+++++ +++
       CDO68528.1  78 LDLGAGHGHTLLYLDSS-KVTKYVALEPNQLMHgeirtlAASKGFTEGTGTLLILPYGAE---------DislitsalggsHTVDTIISILTIC 161
                      8*************999.9999******99999333322222222333333333333333.........2445666677*************** PP

  Methyltransf_12  78 hlkdirevldnir.klLkpgGrl 99 
                       +++++++++ +  ++LkpgG l
       CDO68528.1 162 SIPEPERTIATLVeQVLKPGGTL 184
                      *********99888*******86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0037       6     113 ..      76     190 ..      74     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
  Methyltransf_31   6 rvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielArenaqklgld..nveFeq.....gdieelekl.ledekfDlilsnevlnaladp 90 
                      +vlDlG+G G+ ++ l + ++    ++v ++ ++ +    r+ a+++g++    ++ +     +di  + ++     ++D i+s  +++ +++p
       CDO68528.1  76 VVLDLGAGHGHTLLYLDSsKV---TKYVALEPNQLMHGEIRTLAASKGFTegTGTLLIlpygaEDISLITSAlGGSHTVDTIISILTICSIPEP 166
                      599******999999997443...4699999999999999999******966455555677778888877775566****************** PP

  Methyltransf_31  91 dkile.eiervlkpggilliedpr 113
                      + ++   +e+vlkpgg ll  ++ 
       CDO68528.1 167 ERTIAtLVEQVLKPGGTLLFYEHV 190
                      *9998689***********98887 PP

>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.8e-05      0.23     103     149 ..     137     183 ..     105     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.8e-05
      FBPase 103 kyvvafDPlDGSSnidtnvsvGtifsiyrkksedeettidvlqpGke 149
                  +++++  l GS  +dt +s+ ti si + + +  +  ++vl+pG  
  CDO68528.1 137 DISLITSALGGSHTVDTIISILTICSIPEPERTIATLVEQVLKPGGT 183
                 677888899******************98665555555579999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1900.86
//
Query:       CDO68529.1  [L=255]
Description: hypothetical protein BN946_scf184998.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-12   44.7   0.0    1.5e-11   44.1   0.0    1.3  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   8.1e-16   1.5e-11      57     134 ..       9      94 ..       5      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 8.1e-16
  Acyltransferase  57 llgflmrllgfifidRksnaraagsleniselleegklvviFPEGtrsre.........gellpfkkGlvrlaakakkgvpivPvai 134
                      ++++++rl+++i   R +++  + +++ + e+l++g+++++F EG++++e          +ll+fk+G++r++++a + ++i+P+++
       CDO68529.1   9 IFSTFFRLGQVIETFR-GKGIFQPAIDAAIEKLNRGEWIHLFGEGKVNQEssnpesptaAQLLRFKWGIGRIIMEAQRPPVIIPMWL 94 
                      7899************.99*******************************999999988888***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1983.62
//
Query:       CDO68530.1  [L=458]
Description: hypothetical protein BN946_scf184998.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-23   82.6  18.5    2.8e-23   82.6  18.5    2.2  2  PAP2_3    PAP2 superfamily
    8.7e-09   35.3   8.8    8.7e-09   35.3   8.8    2.2  3  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   5.1      0.31   2.8e+03      32      89 ..      39      99 ..      17     110 .. 0.67
   2 !   82.6  18.5   3.1e-27   2.8e-23      24     190 .]     137     308 ..     119     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.31
      PAP2_3 32 lalaYaslhfqvtllvlvllflrrrerlreflttlllatllgllvyalfPaagPrll....e 89
                 +++Y  +h++++   ++++ ++ +   + + +++++a+l+ +++ +++Pa + +l+     
  CDO68530.1 39 SDTIYI-FHIVLATFWIAIMQVPGFPLKLLIPILYAIALLIPFTSQFFVPAGPIFLYllsfY 99
                456666.4555555555555566666666777888999999999999999877666655444 PP

  == domain 2  score: 82.6 bits;  conditional E-value: 3.1e-27
      PAP2_3  24 ahpalavilalaYaslhfqvtllvlvllf.lrrrerlreflttlllatllgllvyalfPaagPrll.....eeagfvdtvaaaslagalrdgasravll 116
                  hp l++i+ + Y + h++++++v+++++ +r  e+l   + ++ +++l+g+l+ +lfP+a+P++      ++a+++   +++ la+   d+ ++ + +
  CDO68530.1 137 THPILDIIAWVPYGVGHYIIPFIVAAFIWlFRPKEALHFWASAFGYMNLTGVLIQILFPCAAPWYEliyglTPADYTIRGSPGGLAR--IDKLFHSSGY 233
                 466666666666*****************77777777777889********************887776666667766667777766..4444444555 PP

      PAP2_3 117 rgtienglaa...fPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvaial 190
                 +++++n+      fPSlH+a a++ al++ ++ +++ +++++  +++++ +at+++ +HYlvDv++G +la++ ++l
  CDO68530.1 234 TTAFSNSPLVfgaFPSLHAASATMEALFISHFFPWT-TKWVF-GYAAVLYWATMYLTHHYLVDVVGGSCLAVAFFYL 308
                 5555555444455***********************.89988.89****************************9986 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.47   4.2e+03      85     100 ..      41      56 ..      27      78 .. 0.61
   2 ?   -2.7   0.5      0.51   4.6e+03      90     108 ..     156     174 ..     146     194 .. 0.61
   3 !   35.3   8.8   9.7e-13   8.7e-09      52     128 ..     243     310 ..     224     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.47
        PAP2  85 vllalillllavlval 100
                 +++++ ++l+++++a+
  CDO68530.1  41 TIYIFHIVLATFWIAI 56 
                 4445555555555544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.51
        PAP2  90 illllavlvalsRlylgvH 108
                 i++++a++++l R     H
  CDO68530.1 156 IPFIVAAFIWLFRPKEALH 174
                 3444444444444333333 PP

  == domain 3  score: 35.3 bits;  conditional E-value: 9.7e-13
        PAP2  52 akesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalay 128
                 ++  fPS H+a a++ al+++++++   k          ++ +a++  ++ +yl +H+l Dv++G ++++a+++l++
  CDO68530.1 243 VFGAFPSLHAASATMEALFISHFFPWTTKW---------VFGYAAVLYWATMYLTHHYLVDVVGGSCLAVAFFYLLM 310
                 56789***********************99.........9*********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3043.29
//
Query:       CDO68531.1  [L=528]
Description: hypothetical protein BN946_scf184998.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-93  314.0   0.0    1.8e-93  313.8   0.0    1.0  1  Questin_oxidase  Questin oxidase-like


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.8   0.0     1e-97   1.8e-93       1     340 []      60     462 ..      60     462 .. 0.90

  Alignments for each domain:
  == domain 1  score: 313.8 bits;  conditional E-value: 1e-97
  Questin_oxidase   1 fhNHlpHhllAlyalGAsaeqlqaaYeenasyqrpaepspekiteenwrdhLgdeeyyrayldFFedeleekgwkevleeylfs.......... 84 
                      fhNH++Hh+lA+y+lGAsae ++a Y++++syqrpa  spe it+en+++hLgde++yray+dFF+d+l ++g+ +++eey+fs          
       CDO68531.1  60 FHNHASHHVLAVYDLGASAENIEAVYKTHTSYQRPALDSPEPITNENFHQHLGDEKFYRAYVDFFTDRLLAQGAVATIEEYIFSpkanieppap 153
                      9***********************************************************************************9988888876 PP

  Questin_oxidase  85 negaeellsrlfggllHPlIhlGyglefgqpalvaegLAqaavhydsdpse..lls....ae.aas............................ 143
                       e + ++ +r+++g lH lIh+Gyg efg+ + + egLA++avh  + +++  ++s    ++ a +                            
       CDO68531.1 154 GEPPLQMANRFLAGQLHCLIHTGYGCEFGLLGQLSEGLAMTAVHP-PVAPAltPPSilkyVSaA-Tsdlrnaavsavtslipslvldqvhriig 245
                      666889***************************************.555544444466553322.14678888999999*********999988 PP

  Questin_oxidase 144 .s.raessegsslleilerilkderldaa..arpgned..ddkirdgvlkraadeileyanawkvseeedkeeleekleeliwaatllyaaagl 231
                       s +++++ g+++l+i+ r+++d+  + +    p++ +  +d++ +++l++++de++e+++ w+v+   +++e+e+k+eel+w+a+++++++g+
       CDO68531.1 246 qSnDTKTTGGPHALSIIGRVMRDDYWSYKavGLPQPIKgeEDNSSQRLLHERGDELVELVKDWTVDGA-NAKEVESKIEELFWTAVVIFGVGGW 338
                      62567888889************76666554555533355999*********************9665.5899********************* PP

  Questin_oxidase 232 kk....epkkpkyDFflmHlvTsslalrsllallpsklspeskarllraywrlvllvyvargrpeldldsikeyksa................. 304
                      ++    +++k++ DFf++HlvTs+l+l+s++a+l s   p+s+  llr+y++ ++++yvargrp+l    i +++++                 
       CDO68531.1 339 AGrkksKTGKFNGDFFFLHLVTSVLFLPSIVAYL-S---PTSTSILLRTYLLNTVAMYVARGRPPLP---IAGFYDNvtptptppadslppkpa 425
                      999999999************************9.6...788899**********************...9999999999************** PP

  Questin_oxidase 305 ......seaelkkgndwktviqrsasaikhdDeHviKlvral 340
                            +  e++++++w  ++q   s+++h+D+H++Kl+r+l
       CDO68531.1 426 aedtliA--ENRTPSPWLAILQ---STLEHPDDHLCKLLRSL 462
                      ***9862..34579********...999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3836.97
//
Query:       CDO68532.1  [L=517]
Description: hypothetical protein BN946_scf184998.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-91  307.3   0.0    2.1e-91  307.0   0.0    1.0  1  Questin_oxidase  Questin oxidase-like


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.0   0.0   1.1e-95   2.1e-91       1     340 []      59     457 ..      59     457 .. 0.89

  Alignments for each domain:
  == domain 1  score: 307.0 bits;  conditional E-value: 1.1e-95
  Questin_oxidase   1 fhNHlpHhllAlyalGAsaeqlqaaYeenasyqrpaepspekiteenwrdhLgdeeyyrayldFFedeleekgwkevleeylfs.........n 85 
                      fhNH++Hhl+A+ya+GA a  ++aaY+++++y +pa  spe i+e++++ hLg++++y++yl+FF ++l  k ++ev +ey+fs          
       CDO68532.1  59 FHNHASHHLVAIYAMGAGAPLIEAAYQTHVEYMKPAFASPEPIDEKTFWLHLGKRDFYNSYLEFFRAQLLSKSISEVFDEYVFSpraniggagV 152
                      9************************************************************************************999998886 PP

  Questin_oxidase  86 egaeellsrlfggllHPlIhlGyglefgqpalvaegLAqaavhyd.................sdpsellsaeaas................... 143
                      +g+ ++l r++g+l+HP+Ih G+glefg+++lvaegLAqaa+h d                 +           s                   
       CDO68532.1 153 KGEPHMLLRFYGALVHPMIHAGCGLEFGLKGLVAEGLAQAATHADggkklvpdmlflrekepN-----------Spsvsrlsallpslslrrry 235
                      67999***************************************8666555444444332220...........13555566678888888888 PP

  Questin_oxidase 144 .......sraessegsslleilerilkderldaa.arpgnedddkirdgvlkraadeileyanawkvseeed...keeleekleeliwaatlly 226
                             s+ e ++g+++++il+ri++d+r++a+  r  +++    +d+v   +++++ e+a++w+ + e +   +++++ek+eel+w+++ +y
       CDO68532.1 236 tggertaSHGERKSGVHAFSILARISADPRFSAEnVRLPAPEGVSPFDRVNDTVGEALAELAAEWAADLEGNvvtADKIREKIEELAWMNVIIY 329
                      8776654245666777****************997555455588899999999*************966653666778**************** PP

  Questin_oxidase 227 aaaglkk....epkkpkyDFflmHlvTsslalrsllallpsklspeskarllraywrlvllvyvargrpeldldsikeyksa............ 304
                      +++g+++    e+k++++DFf+mHlvTss+ l+++ a++ s   pe++ +ll++y+++++++yvargr +l    i+e+++a            
       CDO68532.1 330 GIGGWGGrersETKQFNADFFYMHLVTSSISLPTYAAYF-S---PETAGLLLHTYFAVCIAWYVARGRAPLP---IREFYEAttvkpappstgt 416
                      *****9999*****************************9.6...677889**********************...99999999*********** PP

  Questin_oxidase 305 .........seaelkkgndwktviqrsasaikhdDeHviKlvral 340
                               ++++  ++n+w +++q   ++i h+ eHv+Kl+ral
       CDO68532.1 417 patpaentlTPDDP-APNPWLPIVQ---TTITHPGEHVCKLQRAL 457
                      ********855444.59********...99*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3605.20
//
Query:       CDO68533.1  [L=449]
Description: Glycosyltransferase Family 76 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-46  157.4  17.1    2.8e-45  155.5  17.1    1.8  1  Mannosyl_trans2  Mannosyltransferase (PIG-V)


Domain annotation for each model (and alignments):
>> Mannosyl_trans2  Mannosyltransferase (PIG-V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5  17.1   1.6e-49   2.8e-45      53     443 .]      74     449 .]      29     449 .] 0.79

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 1.6e-49
  Mannosyl_trans2  53 kllenlvsWDsvyflkiaenGyeyeheyaflpllplfvsllskevlaplvgllslravlvlsvfslsillfllaa........vilsdvsvlvl 138
                       +   l+ WD+ yf +ia+ Gy +e+e+af+p+ p++++ ++  v + +++    r +        ++ll  laa         +l++++ +  
       CDO68533.1  74 AVASALLRWDAFYFAHIARDGYVHEQEWAFFPGTPYVMRFGA-AVARLVRSEGPGRDTAHEPAQWEDFLLGGLAAsllsapstLALYELTSIHF 166
                      33345899*******************************999.555555554444444333333333444444440000022256677777777 PP

  Mannosyl_trans2 139 kareasfkasllfclspaavfl.asiYseaLfallafsgvyslesgisissvllfalstivrsnglvsvgflmfsllqrffeaLielrkarkll 231
                       +r+++f a+ll +l ++ v l  ++Yse+ f +l+++g+      +   +   fal+t+ rsng+   gf+ + l+    e L+++rk +   
       CDO68533.1 167 GSRNVAFLAALLSLLPSSPVTLrIAGYSEPFFTFLSYTGMLCCAHKQWLLATCCFALATTFRSNGIFLCGFIAWGLVA---EPLLNRRKIHV-G 256
                      8899***********9988877369***************9999999999999*******************998776...56666655443.3 PP

  Mannosyl_trans2 232 kvliallLsvillflplvlfqyYaYkqfClqrsaGdevpWCksdvpllYsyiqshYWgvGlLkYyelkqvPnfLlaaPvlilvvysilsyvksr 325
                      + +      + +l       q+ aY+ fC ++sa   + WC   +p++Y ++q +YW+vG+++Y++l+q+Pnf+l aP l l+   i+ yv+  
       CDO68533.1 257 RTVY-----AAILXXXXXXXQFRAYQLFCAGQSA--PASWCSNAIPSIYGHVQAKYWNVGFMRYWTLQQLPNFVLGAPPLALLFTFIVRYVRLA 343
                      3333.....3445566678899999*******98..47****************************************************9853 PP

  Mannosyl_trans2 326 ..pelflslGlqaseknkklekakdltylsadvfvlvvhaavlvviaflimhvqvltrflsasPllyWfaadllqktdlkkkkwkplaedkivk 417
                        p l+ ++   as+++   +++    +l + + ++v+h  vl ++  +  h q++ r ++++Pl yW aa l++    ++ +w+ +       
       CDO68533.1 344 liPRLLACVAGPASSRDVPYHRKARSPFLPPSIAPHVIHGLVLCLLLLFASHTQIVLRQAASMPLTYWAAAWLVV----ERPTWGKR------- 426
                      349999999889999998877766778********************************************9999....45788888....... PP

  Mannosyl_trans2 418 lliyWkacaayilLgtlLfanflPft 443
                       ++ W++  ++  +  +L+a+flP++
       CDO68533.1 427 -WVGWSV--VWGAVSCVLWAAFLPPA 449
                      .667777..78889999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3450.53
//
Query:       CDO68534.1  [L=332]
Description: hypothetical protein BN946_scf184998.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-23   81.1  20.0    9.1e-23   81.1  20.0    2.4  3  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.14   2.5e+03      74      88 ..      38      54 ..       3      78 .. 0.45
   2 ?   -0.5   0.8      0.08   1.4e+03      40      87 ..      83     132 ..      42     136 .. 0.74
   3 !   81.1  20.0   5.1e-27   9.1e-23       2     133 .]     138     274 ..     137     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.14
  FA_hydroxylase 74 l..vlvlaallelliHs 88
                    +   ++++ l+ +l H 
      CDO68534.1 38 IgnPVIATGLMSFLLHE 54
                    12222233333333333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.08
  FA_hydroxylase  40 talaalrahpleallla.llllllllllgplsalll.vlvlaallelliH 87 
                      ++a+++    + +l+  +++ l++++l ++ a ++ +++++  +  + H
      CDO68534.1  83 IPTAQEQWECTKQVLFShFMVELPVIWLFHPLAEAFgMATWQVPFPSWRH 132
                     45566666666777777667767777777555555547777777776766 PP

  == domain 3  score: 81.1 bits;  conditional E-value: 5.1e-27
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahpleallla.llllllllllg.....plsalllvlvlaallelliHsgl 90 
                     ++++++ed++++++H +lH+ + l++++Hk+HH+++ap  laa++ahp+e+++l+  +++ +ll+       ++ +++++++l+ ++++  Hsg 
      CDO68534.1 138 AFFFVFEDMFHFFAHQALHWGP-LYKHIHKIHHKYSAPFGLAAEYAHPAEVMILGtGTIAGPLLYCWfrrdlHIFTVYVWITLRLFQAIDAHSG- 230
                     789****************865.********************************877776665555558555555555***************. PP

  FA_hydroxylase  91 hvslgwllerl...latpraHrlHHskneegnfgvllslwDrlfgT 133
                      ++++w l+++     ++++H++HH  +   nf+ +++++DrlfgT
      CDO68534.1 231 -YDFPWSLQHIvpfWSGAEHHDFHHMAFV-NNFSTSFRWCDRLFGT 274
                     .9*****9555444699************.***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2348.87
//
Query:       CDO68535.1  [L=273]
Description: hypothetical protein BN946_scf184998.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-12   46.1   0.0    1.1e-11   45.0   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.2e-10   41.6   0.1    2.1e-10   40.7   0.1    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    0.00019   21.4   0.3    0.00019   21.4   0.3    1.8  2  GST_C_2   Glutathione S-transferase, C-terminal domain
      0.004   17.4   0.0     0.0057   16.9   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   2.4e-15   1.1e-11       6      74 ..      34     115 ..      31     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 2.4e-15
                 TSHHHHHHHHHHHHHT--EEEE---..........TTTTHHHHHHH-.TT--SSEEETT..S-EEESHHHHHHHHHHHH-GG CS
     GST_N_3   6 aSpyarrvrlaLnekglpvevvevt..........pgehdeellakn.plgkvPvLedd..gealtdSlaIidyLeelypgp 74 
                  Sp+++r+r +Ln+k+lp+++ +v+           g  + ++ +   p +++P+L d+  +++l +SlaI+ yL+++yp+ 
  CDO68535.1  34 WSPNTWRIRYTLNYKQLPYTTTWVEypsiastcqsLGVPPTSAWPSGaPMYTLPALHDPstATSLSGSLAIALYLDREYPDT 115
                 59*******************999988888888887777777777778*********997889****************986 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   4.8e-14   2.1e-10       1      69 [.      34     110 ..      34     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.8e-14
                 S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHH........HHHCTTTSSSEEE-C.TTEEEESHHHHHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvvvlepkgfekseef........prlnprgtVPvLwdk.dgqvineSseIlrylet 69 
                 ++P ++R++ +l++k+l++++++v   p   ++ + +        p   p +t+P+L+d+ +++ +  S++I+ yl++
  CDO68535.1  34 WSPNTWRIRYTLNYKQLPYTTTWV-EYPSIASTCQSLgvpptsawPSGAPMYTLPALHDPsTATSLSGSLAIALYLDR 110
                 79*********************7.22333333333344444444***************8888************97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         2     9e+03      45      61 ..      39      60 ..      33      63 .. 0.44
   2 !   21.4   0.3   4.3e-08   0.00019      17      67 ..     204     253 ..     153     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
                HHHHHH.....HHS----TT-H CS
     GST_C_2 45 vrlraa.....gpgfdireayp 61
                +r r+       p+++ + +yp
  CDO68535.1 39 WRIRYTlnykqLPYTTTWVEYP 60
                5554443222222235555555 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.3e-08
                 HCTTT---SS..CTTCS--HHHHHHHHHHHHHHHH.HHS----TT-HHHHHHH CS
     GST_C_2  17 aleahLadsp.flfGdqptlaDialapflvrlraa.gpgfdireaypnlraWl 67 
                 +l+ + +d++ f+ Gd+p +aD+++a+ l +++ + g++    ++++ + aW+
  CDO68535.1 204 WLDPIGGDGRrFVTGDRPAFADFVVAGRLMWMKKIlGQN---SDEWKAVEAWH 253
                 34556678889*********************9995544...45788888886 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0057      29      86 ..     192     253 ..     141     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHH.....TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHH CS
       GST_C  29 ekvaevlsaleeelk.....kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawl 86 
                 + + e++  + ++l      ++ ++ Gd++ +AD++++  l w+ ++ +  + ++++++ aw+
  CDO68535.1 192 RGLQEAFGTVKTWLDpiggdGRRFVTGDRPAFADFVVAGRLMWMKKILGQNS-DEWKAVEAWH 253
                 6678888889999999999999*****************************9.*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2047.05
//
Query:       CDO68536.1  [L=336]
Description: hypothetical protein BN946_scf184998.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2477.96
//
Query:       CDO68537.1  [L=483]
Description: hypothetical protein BN946_scf184998.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-45  154.9   0.0    5.2e-24   85.0   0.0    2.2  2  CMAS             Mycolic acid cyclopropane synthetase
    0.00042   21.0   0.0     0.0013   19.4   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
      0.001   19.6   0.0     0.0026   18.4   0.0    1.7  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.1e-22   6.6e-19       4      78 ..     151     238 ..     148     241 .. 0.93
   2 !   85.0   0.0   8.7e-28   5.2e-24      99     271 ..     241     429 ..     239     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.1e-22
                 XXXHHHHHHHHTS-HHHHCTTS-TT---S----SS.............TT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHH CS
        CMAS   4 kkevenikahYDlsndffalfldptmtYsCAyfer.............ddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvr 78 
                 ++++ n+ a YD sn++f++fl ++m YsCA +++                +Le+Aq++K++++l+ +++kpG++lL+ G+GWG+l++
  CDO68537.1 151 SRARLNVIASYDQSNELFKAFLSKEMMYSCALWDEeeggvrgdlingpSPLDLENAQRRKIQHVLRTARVKPGDRLLEFGTGWGALAI 238
                 567779999************************999*********9987889********************************9986 PP

  == domain 2  score: 85.0 bits;  conditional E-value: 8.7e-28
                 HHHHHHHHTS-SSS-EEEEES-GGG---....--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-E.EEEEEEEE--HHHHHCTTCCCHHHHHHTSTT CS
        CMAS  99 klakkrvdeldlerkvevklldyedlde....kvdrvvsvgafehvgkenydtffkklkkllkedGl.lllhtitslhkkelaerglklkfidkeiFPg 192
                  la++r+ e++l+ +v+v+l+dy+d++      +d+ vsv+++ehvg + y ++f+ ++ +lk+    +++ + t ++ + +  +     f++++++P+
  CDO68537.1 241 SLAEERIRERGLAGRVRVHLMDYRDIPMewehSFDAFVSVEMLEHVGSKYYRKYFELVDFALKPATAtVVVTSSTFPEGRYTGFQA--DDFMRRYMWPN 337
                 57899*********************8767789**************************999887651555566666666555444..38********* PP

                 S---BHHHHHH...HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHH.HHHHS.....H....HHHHHHHHHHHHHHHHHHHTTSCEEE CS
        CMAS 193 Gelpsieeiee...eiseagftvvdveslrahYakTLkaWaealqenkde.aialv.....s....eevarmyelYLagcaeaFrkgyidva 271
                  +lps + +++   ++s   ft++ ve+  +hY +TL++W  +l+ n+ + a+a +     +    + ++r +e+ +a++ + F kgyi ++
  CDO68537.1 338 SCLPSATVLIDaaySASGGRFTLEAVENHAPHYPRTLRTWDRRLKTNLTQeAMAAQypalrDratyQAFLRKWEYLFAYAGAGFAKGYITCH 429
                 *****998877332344456************************998754233322111112222256777788888888888888888876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.1e-07    0.0013      36      95 ..     242     304 ..     235     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.1e-07
                      HHHHHHHHTTT..TEEEEESBCCGBSSS.TTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25  36 aareraeeegl..nvefvqgdaedlpfe.dgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                       a+er++e+gl  +v+++ +d +d+p e ++sfD+ vs+ +l+h+  + ++k+++ +  +Lkp
       CDO68537.1 242 LAEERIRERGLagRVRVHLMDYRDIPMEwEHSFDAFVSVEMLEHVGSKYYRKYFELVDFALKP 304
                      5889999999999*************75166*******999************9999888887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.3e-07    0.0026      33      90 ..     242     304 ..     228     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.3e-07
                      HHHHHCCHHT-..EEEETTEECCCTSS-T.T-EEEEEEES-CCC-..CCHHHHHHHHHHHEEE CS
  Methyltransf_11  33 lakekaseegl..kvefvvadaeklpfed.nsfDlvvssevlhhv..edpekalkeiaRvLkp 90 
                      la+e+++e+gl  +v+++ +d +++p+e  +sfD+ vs e+l+hv  +  +k+++ +   Lkp
       CDO68537.1 242 LAEERIRERGLagRVRVHLMDYRDIPMEWeHSFDAFVSVEMLEHVgsKYYRKYFELVDFALKP 304
                      689999999999*9************99736**************988888888776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3574.57
//
Query:       CDO68538.1  [L=574]
Description: hypothetical protein BN946_scf184998.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-30  104.1  30.3    1.5e-17   63.4  13.6    2.5  3  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
      0.011   16.1   5.4      0.011   16.1   5.4    2.9  3  MFS_MOT1         Molybdate transporter of MFS superfamily


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.22     2e+03       4      28 ..      41      65 ..      39      73 .. 0.80
   2 !   47.9   6.6   8.4e-17   7.6e-13      34     155 ..      89     211 ..      78     219 .. 0.87
   3 !   63.4  13.6   1.6e-21   1.5e-17     170     385 ..     246     472 ..     234     475 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.22
                     HHHHHHHHHHHHHHHHHHHHTTTS- CS
  Xan_ur_permease  4 lllglQhllamfaalvvvPllvgda 28
                     + +gl++ +am + + v++ ++ d+
       CDO68538.1 41 IRAGLTTWAAMAYIISVNASILQDS 65
                     6689999999999999999988887 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 8.4e-17
                      .....H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHH CS
  Xan_ur_permease  34 elr.qlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllgallvagvlfilisltglrgrlarlipPvvtgp 126
                      e++  li++t  +s+++++l+ l +++++ ++ g++++++  + ++ G+  +  i+++++l a++  g +f+++sl+glr++lar++p   + +
       CDO68538.1  89 EVQrDLITTTAAISALSSFLMGLLANLPVGMAPGLGLNAYF-TYSVVGFHGTGFISYREALAAVFMEGWIFLILSLLGLRQWLARIMPQSLVMA 181
                      44449********************************9988.445555444699**************************************** PP

                      HHHHHHHHHHHHHHHHTTSS-..BTT..B- CS
  Xan_ur_permease 127 vvlliGlslaqiavkkvgggwaaveg.ltv 155
                      v  +iGl++a +++++ g+g + ++  + v
       CDO68538.1 182 VGAGIGLFIAFVGLSSSGLGVIGGDTtNLV 211
                      ******************999876553544 PP

  == domain 3  score: 63.4 bits;  conditional E-value: 1.6e-21
                      HHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHH.HTTSSHH..........HHS-SS-----------HH......H.HHHHTHHH.HHHHHHH CS
  Xan_ur_permease 170 villlsvflkglfsqlpiLigiiagwllalfmg.ivnlspe..........vseapwfqlpsplkfgtpl....fnlgliltvlavalvavves 248
                      v+ +l+vfl+ +  + +iLigi+++ ++++    +v   p           +++  +f++  + + g+ l     n ++  ++++++ v ++++
       CDO68538.1 246 VGGVLTVFLMLYRIKAAILIGIFITSIISWPRPtSVTYFPHtdagdamfdfFKQVVTFWP--LKHVGNALdynyGNGKVWYALITFLYVDILDT 337
                      66788999**********************876555555555778888887444444444..223333335445578888888999999***** PP

                      HHHHHHHHHHHTS-TII...IIIHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHH CS
  Xan_ur_permease 249 vGdiravakvvgrslkp...kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepv 339
                      +G+++ +ak++g++++      +   a+ +d +++ +++l+G++pvt+++e++ +++ +    +++++ta +  i++ ++ ++a+ ++sIP  +
       CDO68538.1 338 TGTLYSMAKFAGLRDPVtldFENSTIAYCVDAFSISMGALMGTSPVTAFIESATGISEG----GKTGITAMTTGIMFFVSVFFAPIFASIPPWA 427
                      *************9999776677778999******************************....******************************* PP

                      HHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH--- CS
  Xan_ur_permease 340 lgGvllvvfgmiaasgvsnlqtvdldsarnllivavslvlGlgvat 385
                       gG +lv++g++++ +v+++++  + +a  ++++ +++ l  ++a+
       CDO68538.1 428 TGG-ALVIVGSLMIRNVREINWDYIGDAVPAFLTIIIIPLSYNIAY 472
                      666.57899******************************9998876 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   5.4   1.2e-06     0.011      29     109 ..      95     188 ..      81     190 .. 0.79
   2 ?   -4.0   0.4         2   1.8e+04      73      82 ..     244     253 ..     238     269 .. 0.48
   3 ?    2.1   2.0     0.028   2.5e+02      45     108 ..     377     436 ..     340     439 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
    MFS_MOT1  29 ltalllsvGlmnlltglfggvPmc..................hgAgglaaqyrf..gartgaagillGlvllllgltgllerllrliPksvlgglllga 107
                 +t+++ +++l  +l+gl+ ++P+                   hg g       f    +  aa+++ G ++l+l+l+gl ++l+r++P+s++ ++ +g 
  CDO68538.1  95 ITTTAAISALSSFLMGLLANLPVGmapglglnayftysvvgfHGTG-------FisYREALAAVFMEGWIFLILSLLGLRQWLARIMPQSLVMAVGAGI 186
                 5777888889999999999999998888888888866333333333.......2446799*******************************99888777 PP

    MFS_MOT1 108 Gl 109
                 Gl
  CDO68538.1 187 GL 188
                 76 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
    MFS_MOT1  73 illGlvllll 82 
                 i++G vl ++
  CDO68538.1 244 IFVGGVLTVF 253
                 3343333332 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.028
    MFS_MOT1  45 lfggvPmc..hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaG 108
                 l+g  P+     ++  +++   g +tg  ++ +G+++++ ++++    + + iP    gg l+++G
  CDO68538.1 377 LMGTSPVTafIESATGISE---GGKTGITAMTTGIMFFV-SVFF--APIFASIPPWATGGALVIVG 436
                 4444455532223333333...77777777777766554.4443..57788888888888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3940.40
//
Query:       CDO68539.1  [L=145]
Description: hypothetical protein BN946_scf184998.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-38  131.4   0.2    5.7e-38  131.1   0.2    1.0  1  RNA_pol_Rpc34  RNA polymerase Rpc34 subunit


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc34  RNA polymerase Rpc34 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.2   3.2e-42   5.7e-38     119     267 ..       7     143 ..       3     145 .] 0.94

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 3.2e-42
                    HHHHHHHHHHTTXXEEEEXSSSSSXEEEESSSTXXXXXXXXXXXXXSTTSSSSTHHHHHHHHHHHHHCHCSXSTT..........SSS.SSHHHHH CS
  RNA_pol_Rpc34 119 vkkcLksLeskkyiksvksvkaptkkiYllanLePseevTGGpwftdgelDveFieeleeiifklvkqkssvsleqitqkkeksgkkaekekkkal 214
                    + +cLksL +k++ik v  v + t kiY+l+nLePs e++GGpw+td+elD+eFi  l ++++k+++ +s+ + +            ++++ +  +
     CDO68539.1   7 LSQCLKSLTQKQLIKTVTDVRHATWKIYMLFNLEPSVELSGGPWYTDKELDTEFIRLLTNVCLKIIRDRSMAKAK------------NSDNGTVRQ 90 
                    789********************************************************************8865............334568889 PP

                    HHSSSSTXXBXSCHHHHHHHCSTTTSSSXSHCCHHHHHHHHCHSSSCEEETTT CS
  RNA_pol_Rpc34 215 plaagyksyptveeiakfineagitkvrLseediqqlvevLvyDgklekvkvs 267
                    +++   +syp +++i +++n++++t++  ++e ++ l++vL++ gk+ekv+++
     CDO68539.1  91 LYPVSHASYPNAAQISNLLNKSRVTGTVFTVEHVEMLLQVLILNGKVEKVRIE 143
                    9*************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1107.25
//
Query:       CDO68540.1  [L=2234]
Description: hypothetical protein BN946_scf184998.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     7e-116  385.1   0.1    1.1e-84  283.2   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.2e-50  169.8   0.0    5.6e-50  168.5   0.0    1.8  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    1.9e-44  151.2   0.0    6.6e-44  149.5   0.0    2.0  2  OTCace_N         Aspartate/ornithine carbamoyltransferase, ca
    5.3e-43  147.0   0.0    3.5e-42  144.3   0.0    2.3  3  GATase           Glutamine amidotransferase class-I
    2.3e-42  144.2   0.1    4.9e-42  143.1   0.1    1.6  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    1.5e-30  106.3   0.0    4.9e-30  104.7   0.0    1.9  2  OTCace           Aspartate/ornithine carbamoyltransferase, As
      8e-20   71.2   0.2    1.2e-09   38.0   0.0    2.4  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.1e-18   65.8   0.0    1.3e-17   63.8   0.0    2.2  1  MGS              MGS-like domain
    2.6e-17   62.9   0.0    3.1e-08   33.4   0.0    2.4  2  ATP-grasp        ATP-grasp domain
    2.4e-09   37.0   0.1     0.0014   18.4   0.0    3.0  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    2.1e-06   27.9   0.2      0.029   14.4   0.0    2.7  2  ATP-grasp_3      ATP-grasp domain
    2.3e-05   24.3   0.2     0.0033   17.2   0.0    3.0  2  Peptidase_C26    Peptidase C26
     0.0017   18.2   0.0       0.53   10.1   0.0    4.2  5  DJ-1_PfpI        DJ-1/PfpI family
  ------ inclusion threshold ------
      0.031   14.0   0.1        0.3   10.8   0.0    2.3  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
      0.063   12.7   0.0        1.5    8.2   0.1    2.3  2  ATP-grasp_5      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.2   0.0   8.8e-88   1.1e-84       1     210 [.     582     785 ..     582     786 .. 0.99
   2 !   99.8   0.0   1.2e-31   1.5e-28       3     207 ..    1119    1316 ..    1117    1319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 283.2 bits;  conditional E-value: 8.8e-88
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+e +++a+++i++++++ss+a  +t eea+a+a+ igyPvi++aa++lGG+G+++a+n+e+l++l++ka+a++      +qvlveks+kg+keiE+e
   CDO68540.1 582 DRELFASAMAEIGERCARSSTA--TTSEEAIAAANAIGYPVIVRAAYALGGLGSGFAQNDEQLKALCSKAFATS------PQVLVEKSMKGWKEIEYE 671
                  9*********************..9*************************************************......8***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                  v+rD ++n+itvc++en+++l  +t+++i+vAPsqtL+d+++++lr++a++v+r++gvvg+++++++l+p+skey++iEvN+Rls++sala+kaTG++
   CDO68540.1 672 VVRDCRDNCITVCNMENFDPLgiHTGDSIVVAPSQTLSDSDYNMLRTTAINVIRHLGVVGECNIQYALNPTSKEYCIIEVNARLSRSSALASKATGYP 769
                  ************************************************************************************************** PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+++aak++lg++L+e
   CDO68540.1 770 LAFIAAKLGLGIPLNE 785
                  **************97 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 1.2e-31
                   HHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2    3 esakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98  
                    +++++l++i+v+    ++   ++ +ea a+ +++gyPv++++++ l G  m v+ +e++l+  +++a+a ++    ++ v + k+++g keiE++
   CDO68540.1 1119 FKFSRLLDEIGVDQPLWKEL--SSFDEAHAFCEKVGYPVLVRPSYVLSGAAMNVVFSENDLNSYLSQATAVSR----EHPVVITKYIEGAKEIEMD 1208
                   56777888888877766666..99************************************************6....9****************** PP

                   EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS CS
  CPSase_L_D2   99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTG 192 
                    ++   g +i+    e + +   + ++   + P q L++e+ ++++ a++k+ ++++v+g  +++f+ +  ++e+ viE N R  ++ +  +k+TG
   CDO68540.1 1209 AVAKD-GKMIMHYISEHVENAgvHSGDATLIHPPQDLDPETVRRIEDATAKIGNALNVTGPYNIQFIAK--NNEIKVIECNLRAARSFPFVSKTTG 1301
                   99855.55555444455544446********************************************99..69*********************** PP

                   --HHHHHHHHHTT-- CS
  CPSase_L_D2  193 ldlvkeaakialgek 207 
                   +d ++ a k+ l+++
   CDO68540.1 1302 IDAIELATKVMLNIP 1316
                   *********988765 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   0.0   4.7e-53   5.6e-50       3     128 .]      48     186 ..      46     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.5 bits;  conditional E-value: 4.7e-53
  CPSase_sm_chain   3 vLvLedGtvfeGksfga..keavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGv...........needvesekikvaglvvrelse 83 
                      vL L+dGt+f+G sfga  k+ +GE+vf+Tgm+GY+e+ltDpsY+gqil+ltypliGnyGv             +d+es++i+vaglvv ++se
       CDO68540.1  48 VLELADGTAFRGISFGAegKSIAGECVFQTGMVGYTESLTDPSYEGQILILTYPLIGNYGVpsrpkdftvddIPQDFESSRIHVAGLVVGSYSE 141
                      899*************546778***************************************999999988876689999*************** PP

  CPSase_sm_chain  84 epsnwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      ++s++ a +sL +wlke+++p+i gvDTRaLtkk+rekg+m+g+i
       CDO68540.1 142 DYSHFLAGSSLGQWLKESGVPAIFGVDTRALTKKIREKGSMLGKI 186
                      *******************************************97 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.2   7.5e+03      20      64 ..    1143    1190 ..    1139    1214 .. 0.69
   2 !  149.5   0.0   5.5e-47   6.6e-44       1     147 [.    1934    2074 ..    1934    2075 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.2
                  HHHHHHHHHHT...TT-STTTTT-EEEEEESS--HHHHHHHHHHHHHT CS
    OTCace_N   20 laaelkekvkk...ekkekllkgktlallFeepStRTrvSfevAakrl 64  
                  +a+++ ekv      + +  l+g  + ++F+e+ +   +S  +A++r 
  CDO68540.1 1143 EAHAFCEKVGYpvlVRPSYVLSGAAMNVVFSENDLNSYLSQATAVSRE 1190
                  566666555545555556668888999999999999999999998876 PP

  == domain 2  score: 149.5 bits;  conditional E-value: 5.5e-47
                  S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHH CS
    OTCace_N    1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvl 97  
                  rh+ls++++s ++++ l++la+e++ +v+++ + ++lkgk+la+lF+epStRT++Sf++A+kr Gg+v+++       +ssv kg  Esl Dt+r+l
  CDO68540.1 1934 RHILSVKQFSHRDLHDLFTLAHEMQLQVERNGTLDILKGKVLATLFYEPSTRTSSSFDTAMKRCGGEVVNVHVD----SSSVLKG--ESLPDTIRTL 2024
                  8**********************************************************************944....89999**..********** PP

                  HHHTSEEEEEES..SHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHH CS
    OTCace_N   98 sryvdaiviRhp..gaeeleelakyasvpviNagdgdgeHPtQaLaDlltir 147 
                  ++y+daiviRhp  g+   +  ak++ vp++Nagdg geHP QaL+D++tir
  CDO68540.1 2025 GCYADAIVIRHPevGS--SQLAAKFSPVPILNAGDGIGEHPSQALLDVYTIR 2074
                  ************6655..6667999*************************97 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.0     3e-45   3.5e-42      19     189 ..     268     430 ..     256     431 .. 0.93
   2 ?   -3.9   0.0       8.3   9.9e+03      59      74 ..    1024    1039 ..     992    1040 .. 0.69
   3 ?   -1.1   0.0       1.1   1.3e+03      85     159 ..    1148    1222 ..    1144    1230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 3e-45
                 HTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCT.STS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTTCGG CS
      GATase  19 elgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikeare.nkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddetall 115
                 ++   +e+vp+d++ + +   ++ +dg+++s+Gpg+p+ v+ +ie +++a+e ++ Pi+GICLG+Qlla++ g+k+ k+k ++++g++++++d      
  CDO68540.1 268 AATSAMEIVPWDYDYLLS--SEEPFDGLFISNGPGDPTmVKPTIERLRRAMEkSDRPIFGICLGHQLLALAAGAKTSKMK-YGNRGHNIPCTD------ 357
                 44557899****988887..4789****************************99**************************.************...... PP

                 TTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 116 yglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                   +++++i++++H+yev+  +++p+g++ ++++++d+++++i   ++pf++vQFHPEst++p+++e+lf+ +i+
  CDO68540.1 358 ALSGRCYITSQNHGYEVEA-ASLPDGWKELFQNANDGSNEGIYCVDKPFFSVQFHPESTPGPRDTEFLFDVFIQ 430
                 55557*************8.99************************************************9986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.3
                  THHHHHHHHCTSTS-E CS
      GATase   59 gkieaikearenkiPi 74  
                   +++ai+ +ren+iP 
  CDO68540.1 1024 CAVRAIRTLRENGIPT 1039
                  5788999999999995 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.1
                  HHHTTTEEEEEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHH.HTTEEEEEEEETTEEEEEEEE CS
      GATase   85 aiefgrkvvkekekehhggtmrlgddetallyglknevierhrHryevnpkele.paglevtakseddeelmeiie 159 
                  ++++g +v  + ++   g+ m++   e++l + l++   +++ H  ++++  +e  +++e+ a+ +d++ +m  i 
  CDO68540.1 1148 CEKVGYPVLVRPSYVLSGAAMNVVFSENDLNSYLSQATAVSREHPVVITK-YIEgAKEIEMDAVAKDGKMIMHYIS 1222
                  56677788899999999*******99999999999**************8.5551455899999988888887765 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.1   4.1e-45   4.9e-42       2     122 .]     871     991 ..     870     991 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 4.1e-45
  CPSase_L_D3   2 elkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk.eldeellreakklGfsDkqiaelleeeeeeevrelrkklgil 98 
                  el +ptd+Rifai  a++rg+sv++i ++t+id+wFL+kle++ ++e+ l++ ++ ++ ++llr+ak+lGfsD+qia++++ ++e +vr+lr++ gi 
   CDO68540.1 871 ELMNPTDKRIFAINTAFHRGYSVDKIWQMTNIDKWFLRKLESIYKMEQILNECNAaSIGPDLLRQAKQLGFSDRQIATCMG-TTELAVRRLRQENGIA 967
                  799*************************************************9999***********************76.78899*********** PP

  CPSase_L_D3  99 pvykrvDtcAaeFeaetpYlYstY 122
                  p +k++Dt+AaeF+a t+YlY+tY
   CDO68540.1 968 PFVKQIDTVAAEFPAFTNYLYTTY 991
                  ***********************9 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.9   4.7e+03       2      75 ..     541     616 ..     540     641 .. 0.78
   2 !  104.7   0.0   4.1e-33   4.9e-30       2     156 ..    2082    2231 ..    2081    2232 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.9
                 C.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TT..SSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEE CS
      OTCace   2 glkiafvGdkknnvanslikllarlgmdvvlvaPkg..lepdkevleeakknakksggsititedleeavkgaDvv 75 
                 g+ ++f G    nv   l   +  lg +v     ++  + +d e+++ a +++ +  ++ +  +  eea++ a+ +
  CDO68540.1 541 GIYVTFGGQTALNVGIKLKDEFESLGCKVLGTPIDTiiMTEDRELFASAMAEIGERCARSSTATTSEEAIAAANAI 616
                 6667777776777777777788888888877767778899999999999999988865555556778999888877 PP

  == domain 2  score: 104.7 bits;  conditional E-value: 4.1e-33
                  C.EEEEESS.TTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHH...HHHH CS
      OTCace    2 glkiafvGd.kknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekere...erlk 94  
                  g +i+++Gd k++++++sl+ ll+ + + +++v+P++l +   v++ a+k     g  +   e+lee+++++Dv+y ++++     ker+   ++  
  CDO68540.1 2082 GRTITMLGDlKNGRTVHSLVTLLSLYTVRLNFVSPPSLAMPASVVSAARK----AGVPVYQCESLEEVLAETDVLYVTRLQ-----KERFtneSEWL 2169
                  899**********************************9998888866655....59*************************.....44443446666 PP

                  HHCC.CSB-HHHHHHS-TT-EEEE-S---BTTTB-HHH.HTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace   95 klkd.yqvteellklakkdaivlHcLPakrgeEvtdeV.fdsprsvvfeqaeNrlhtikAllvl 156 
                  ++kd y+++ ++l++ak+d+iv+H+LP  r +E++ eV fds r+v+f+q++++l++++All++
  CDO68540.1 2170 AVKDaYRIDHAVLSRAKEDMIVMHPLP--RVNEIDPEVdFDSRRAVYFRQMRYGLFIRMALLAS 2231
                  66666**********************..*********446667******************86 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.8e-10   2.2e-07      26     174 ..     607     753 ..     595     754 .. 0.85
   2 !   38.0   0.0   9.9e-13   1.2e-09      26     173 ..    1142    1286 ..    1124    1310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.8e-10
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakys 118
                      e   +  +++gypv+V++a +   +G   +++ e+lk+  ++af    +vlvE+ +   +eie  v+ + + ++ +v ++    + +d    ++
       CDO68540.1 607 EEAIAAANAIGYPVIVRAAYALGGLGSGFAQNDEQLKALCSKAFATSPQVLVEKSMkGWKEIEYEVVRDCRDNCITVCNM----ENFDPLGIHT 696
                      3444567899***********99*********************************6679********666666655444....4566666677 PP

                      .TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 119 ddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                      +d++ +    +l+++ ++ ++++a+++ + l++ G + + + l  ++ e  + EvN 
       CDO68540.1 697 GDSIVVAPSQTLSDSDYNMLRTTAINVIRHLGVVGECNIQYALnPTSKEYCIIEVNA 753
                      89999999999********************************6677889999*995 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 9.9e-13
                       HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHH..HTT-SCEEEEE--.ESEEEEE.EEEETSSCEEEEEEEEE-SSSSS-H CS
  Dala_Dala_lig_C   26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieea..fkydekvlvEeai.egreiev.avlgneklevsevgeivvkkgfydy 113 
                       +  ++ +e++gypv+V+p+   S   ++ v se++l++++++a  +++++ v++ ++i  ++eie+ av +++k+ ++ + e+v + g+   
       CDO68540.1 1142 DEAHAFCEKVGYPVLVRPSYVLSGAAMNVVFSENDLNSYLSQAtaVSREHPVVITKYIeGAKEIEMdAVAKDGKMIMHYISEHVENAGVH-- 1231
                       4567889*********************************98622567889*******889****9778899*************99986.. PP

                       HHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEE CS
  Dala_Dala_lig_C  114 eakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvN 173 
                           s+d++ ++ p +l++e+ ++i+++  k+ +al+++G   + f+ + ++ei + E N
       CDO68540.1 1232 ----SGDATLIHPPQDLDPETVRRIEDATAKIGNALNVTGPYNIQFIAK-NNEIKVIECN 1286
                       ....5678889**********************************9876.8999999998 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   1.1e-20   1.3e-17       1      95 []    1398    1495 ..    1398    1495 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.1e-20
                  THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHH....CHHHHHHHHHHHTTSHE CS
         MGS    1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatva....kdgykirraaenidIpl 93  
                  ++++ +++l+++g++++ T+GTa++++e+g+p++ ++ + ++    + +++++++++n+ id++in+++++  ++     ++gy++rr+a+++ +pl
  CDO68540.1 1398 EILPSVQRLHAAGYNIFGTSGTADFFTEHGVPCKYLEILPEDS-DEKSEYSLTQHLANNLIDMYINLPSKNHYRRPasyaSKGYRTRRMAVDFAVPL 1493
                  6899****************************66666666666.88889***********************99999999***************** PP

                  ES CS
         MGS   94 pt 95  
                  +t
  CDO68540.1 1494 IT 1495
                  98 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.3e-09   2.8e-06       7     141 ..     596     735 ..     590     757 .. 0.84
   2 !   33.4   0.0   2.6e-11   3.1e-08       2     159 ..    1126    1288 ..    1125    1292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.3e-09
                 -B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEETT CS
   ATP-grasp   7 pvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvetvqedg 103
                 + +r  +++++ee+ +aa+++g+pv+v+ +  +  G G+ + +++e+l+ + + +  ++ +v+vE+ ++  kE+   vvr+ + +  ++  +e+    g
  CDO68540.1 596 RCARSSTATTSEEAIAAANAIGYPVIVR-AAYALGGLGSGFAQNDEQLKALCSKAfaTSPQVLVEKSMKGWKEIEYEVVRDCRDNCITVCNMENFDPLG 693
                 678899999*******************.8999*****************99988888999***********************999999999999888 PP

                 EEE...EEEECEE-SCH.HHHHHHHHHHHHHHHHTSSEEEEE CS
   ATP-grasp 104 ilr...lsvapaevsek.aqkkaeeiakkiveeLggvGvfav 141
                 i     ++vap++  ++ + +  +++a +++++Lg+vG   +
  CDO68540.1 694 IHTgdsIVVAPSQTLSDsDYNMLRTTAINVIRHLGVVGECNI 735
                 8743337888877655527777888888**********7665 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 2.6e-11
                  HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE-- CS
   ATP-grasp    2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafyp 94  
                  ++ g+  p +  ++s +e+++++e++g+pv+v+ +    +G    vv se+dl++ l+++    +e++v++ ++++  kE+  + + +++G++ +  
  CDO68540.1 1126 DEIGVDQPLWKELSSFDEAHAFCEKVGYPVLVR-PSYVLSGAAMNVVFSENDLNSYLSQAtavsREHPVVITKYIEGAKEIE-MDAVAKDGKMIMHY 1220
                  678999999************************.99999***************999998899899***************7.566789***99999 PP

                  EEEEEEETTE....EEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp   95 vvetvqedgi....lrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159 
                  + e+v++ g+      l   p++++ +  +++e+ ++ki ++L++ G + + +  + ++e+ v E   R
  CDO68540.1 1221 ISEHVENAGVhsgdATLIHPPQDLDPETVRRIEDATAKIGNALNVTGPYNIQFIAK-NNEIKVIECNLR 1288
                  99999876551111678899*******************************87666.777888777666 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.015      51     122 ..     718     792 ..     706     799 .. 0.80
   2 !   18.4   0.0   1.2e-06    0.0014       6     114 ..    1194    1318 ..    1189    1333 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
  ATPgrasp_Ter  51 elaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteeveepeeg 122
                     a ++++++g+ g  n+Q+  +     ++++E+N+R s      s ++G  l+ +a+kl lg + +e+++  ++
    CDO68540.1 718 TTAINVIRHLGVVGECNIQYALNPTSkeYCIIEVNARLSRSSAlASKATGYPLAFIAAKLGLGIPLNEIKNSVTK 792
                   67899**************9877544369*********96555156777**************977777665554 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.2e-06
  ATPgrasp_Ter    6 lvmeyLeg.pEySvDvlaekgevlaavpRrKe.kgglq.............elekdeelielaerlaeefgldglvnvQvrededgpkLLEiNpR 85  
                    ++++y+eg +E+  D +a++g++++    +   + g++               e+  ++ ++++++ ++++++g +n+Q+  ++++ k++E N R
    CDO68540.1 1194 VITKYIEGaKEIEMDAVAKDGKMIMHYISEHVeNAGVHsgdatlihppqdlDPETVRRIEDATAKIGNALNVTGPYNIQFIAKNNEIKVIECNLR 1288
                    5666666534666666666666554333332222222233444444544333344456778889999**************************** PP

  ATPgrasp_Ter   86 asGGlg.ysalaGvnlpylalklllglete 114 
                    a+  +  +s  +G++ ++la k +l+ ++e
    CDO68540.1 1289 AARSFPfVSKTTGIDAIELATKVMLNIPVE 1318
                    **9997357788************997444 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00032      0.38      28     159 ..     614     756 ..     595     758 .. 0.72
   2 !   14.4   0.0   2.4e-05     0.029       2     157 ..    1116    1288 ..    1115    1292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
                  S--SSSEEEEESS-------B--SS--TTE.............EEEE---S.EEEEEEEEE.SSSEEEEEEEEEEEET........TEEEEEEES--- CS
  ATP-grasp_3  28 eeeekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieG.kplSvsllsdgekvlvlavnrqliekaeke....fvyaGnvtpiet 114
                  +   ++++v  +++ gg +  +++++e+++a + +        lv + ++G k++  +++ d  ++ + ++n +  +  + +    +v a + t +  
   CDO68540.1 614 NAIGYPVIVRAAYALGGLGSGFAQNDEQLKALCSKAFatspqvLVEKSMKGwKEIEYEVVRDCRDNCITVCNMENFDPLGIHtgdsIVVAPSQTLS-D 710
                  445788888888888888888888888877666655467777788888888667888888888888888888887765333322223333222222.2 PP

                  -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3 115 elkeevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                  ++ + ++++a +v+++l g++G   +   l+   +e ++iEvN+Rl 
   CDO68540.1 711 SDYNMLRTTAINVIRHL-GVVGECNIQYALNPtsKEYCIIEVNARLS 756
                  5577889999*******.99999999999988889**********85 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.4e-05
                   TSHHHHHHHHTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---S.EEEEEEEEE CS
  ATP-grasp_3    2 sdKlktykkLkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieG.kplSvslls 81  
                   ++ +k+ + L+e gv  P           ++ +e++ +++ v p++   g ++ vv  ++++++ + + +        ++ ++ieG k++ +++++
   CDO68540.1 1116 ENRFKFSRLLDEIGVDQPlwkelssFDEAHAFCEKVGYPVLVRPSYVLSGAAMNVVFSENDLNSYLSQATavsrehpvVITKYIEGaKEIEMDAVA 1211
                   68889999999999999987655321222233555699******9988887777777777777777776678899999*******956899***** PP

                   .SSSEEEEEEEEEEEET....TEEEEEEES----H..HHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEESS CS
  ATP-grasp_3   82 dgekvlvlavnrqliekaekefvyaGnvtpietel..keevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNPR 157 
                   +  k+ +  +++ + +      v +G  t i+  +  + e+v+ +e++++k+    ++ G   + ++ k++e+ viE N R
   CDO68540.1 1212 KDGKMIMHYISEHVENA----GVHSGDATLIHPPQdlDPETVRRIEDATAKIGnalNVTGPYNIQFIAKNNEIKVIECNLR 1288
                   88777766666665554....899999887754443499999999999999985557778888****************88 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.8e-06    0.0033      97     152 ..     312     354 ..     308     413 .. 0.55
   2 ?   -3.2   0.0       4.7   5.6e+03     138     183 ..    1954    1999 ..    1943    2008 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavk 152
                    L ra+ +++ Pi+giC+G+qll+ a G ++ +  +   g+            h++ 
     CDO68540.1 312 LRRAMEKSDRPIFGICLGHQLLALAAGAKTSKMKY---GNR----------GHNIP 354
                    5567778899************9999977654333...233..........33333 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.7
  Peptidase_C26  138 dhreheqsaashavkvekgsllaellgseeievnslHhqaikelae 183 
                      h ++ q++ + ++++ kg++la l+ + ++++ s    a+k+ + 
     CDO68540.1 1954 AHEMQLQVERNGTLDILKGKVLATLFYEPSTRTSSSFDTAMKRCGG 1999
                     45566678888899999********999999999998888888665 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00044      0.53      60     117 ..     288     343 ..     264     346 .. 0.80
   2 ?   -2.8   0.0       4.1   4.9e+03      47      79 ..     422     458 ..     410     466 .. 0.63
   3 ?    0.5   0.0      0.39   4.7e+02      15      46 ..     485     516 ..     478     551 .. 0.80
   4 ?    0.4   0.0      0.41   4.9e+02      17      88 ..    1026    1103 ..    1019    1112 .. 0.76
   5 ?   -1.5   0.0       1.6   1.9e+03       1      30 [.    1384    1413 ..    1384    1417 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00044
                 CG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSE CS
   DJ-1_PfpI  60 aeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgrr 117
                 + +D l +  G   p+ ++  + +  l + + +++++++ IC g qlLa a   k  +
  CDO68540.1 288 EPFDGLFISNGPGDPTMVK--PTIERLRRAMEKSDRPIFGICLGHQLLALAAGAKTSK 343
                 5788888988877665555..467777777789***************9887776665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.1
                 EEE-SEEGG....GCTCCG-SEEEE--BHHHHHHHHT CS
   DJ-1_PfpI  47 kvtvdasld....dvkaaeyDalvlpGGragperlre 79 
                 ++  d+ ++     +k+++   + +pGG++  ++ r+
  CDO68540.1 422 EFLFDVFIQniidCAKTGSMVPISMPGGTKEENERRT 458
                 555555555444144556899999****995554444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHTTEEEEEEESSTSEEEETTSE CS
   DJ-1_PfpI  15 ElivpvdvlkragikvdvvsvdkeevkgsrGl 46 
                   +  +++lk++gi + +v ++  ++ +srGl
  CDO68540.1 485 SGSQAIKALKEEGIYTILVNPNIATIATSRGL 516
                 5567899************************4 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.41
                  HHHHHHHHHTTEEEEEEESSTSEEEETTS.......EEEE-SEEGGGCTCC.G-SEEEE--BHHHHHHHHTSHHHHHHHH CS
   DJ-1_PfpI   17 ivpvdvlkragikvdvvsvdkeevkgsrG.......lkvtvdaslddvkaa.eyDalvlpGGragperlrenekvvelvk 88  
                  +  ++ l+++gi ++++  + e+v++  +       ++++++++ld  +++ +  +++  GG++ p++++ +  +++ vk
  CDO68540.1 1026 VRAIRTLRENGIPTVMINYNPETVSTDYDeadrlyfENISLETVLDIYDTErSRGVILSMGGQT-PNNIALP-LYRQNVK 1103
                  66789999************99999888888878878888888888666773455555578888.9998875.6666655 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.6
                  EEEEEEEETTBEHHHHHHHHHHHHHTTEEE CS
   DJ-1_PfpI    1 kkvlvlladgvedvElivpvdvlkragikv 30  
                  k +l+ ++ + e +E+   v++l +ag+++
  CDO68540.1 1384 KNILFSIGSYKEKLEILPSVQRLHAAGYNI 1413
                  5799***********************986 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.56   6.7e+02      10     101 ..     590     675 ..     583     705 .. 0.78
   2 ?   10.8   0.0   0.00025       0.3       8     105 ..    1123    1217 ..    1117    1238 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.56
                 HHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEEC CS
      GARS_A  10 lkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvd 101
                 ++++g + a+ ++ t  eea +  ++ + ++ +v+a+   +g g   a++ e+  +  +     k+f  ++ +v++E+ ++G +E+   ++ d
  CDO68540.1 590 MAEIGERCARSSTATTSEEAIAAANAIGYPV-IVRAAYALGGLGSGFAQNDEQLKALCS-----KAFA-TSPQVLVEKSMKGwKEIEYEVVRD 675
                 7778888999999999999999999999999.888888778888888777665444444.....4454.788999999999955666655555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00025
                  HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEE.CT CS
      GARS_A    8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalv.dg 102 
                  +ll+++g+  + ++++++ +ea+++ e+++ ++  v+++ + +g  + v+ se++  +     l++ +  + ++ vvi +++eG +E+ + a+  dg
  CDO68540.1 1123 RLLDEIGVDQPLWKELSSFDEAHAFCEKVGYPV-LVRPSYVLSGAAMNVVFSENDLNS----YLSQATAVSREHPVVITKYIEGaKEIEMDAVAkDG 1214
                  5899*****************************.99*********9999998877555....555555677899**********5589988876245 PP

                  TEE CS
      GARS_A  103 ktv 105 
                  k +
  CDO68540.1 1215 KMI 1217
                  544 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0013       1.5      20      53 ..     591     624 ..     581     627 .. 0.86
   2 ?    1.6   0.0      0.13   1.6e+02      15      51 ..    1121    1157 ..    1113    1160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
  ATP-grasp_5  20 eaygipvvetrlassaeeaveaaeeigypvvlKi 53 
                  + +g +++++  a+++eea++aa++igypv ++ 
   CDO68540.1 591 AEIGERCARSSTATTSEEAIAAANAIGYPVIVRA 624
                  567778889999******************9875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
  ATP-grasp_5   15 akelleaygipvvetrlassaeeaveaaeeigypvvl 51  
                     +ll+ +g++ +  +  ss +ea + +e++gypv +
   CDO68540.1 1121 FSRLLDEIGVDQPLWKELSSFDEAHAFCEKVGYPVLV 1157
                   57899*****************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.14u 0.28s 00:00:01.42 Elapsed: 00:00:00.49
# Mc/sec: 13588.06
//
Query:       CDO68541.1  [L=453]
Description: hypothetical protein BN946_scf184998.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-38  129.6   0.4    8.9e-38  129.0   0.4    1.3  1  SLATT_fungal  SMODS and SLOG-associating 2TM effector domain


Domain annotation for each model (and alignments):
>> SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.4   4.9e-42   8.9e-38       2     120 .]     297     417 ..     296     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 4.9e-42
  SLATT_fungal   2 avkeerkaarkarltslalnlaiglQvllgAlltaLgalssgr.tqvaitvLGalnTviAglLArlrgsgePersrkrrkdlekvireieafeldag 97 
                   a++e+++ a ka++ ++aln+aig+Qv+lgAl+t+++a++sg+ t++a++vLG+++T+ A++LA++rg+gePers    +dle +ir+++af+ld+g
    CDO68541.1 297 AEAERDRVALKAKAHAWALNVAIGAQVVLGALTTGVAAATSGHqTSIATSVLGGMSTLAASYLAKARGTGEPERSYIMLRDLESFIRDCQAFMLDKG 393
                   789********************************************************************************************** PP

  SLATT_fungal  98 .eas..ldvreeieelrrryeealan 120
                     ++  +d  +++e++rrr+ee+l+n
    CDO68541.1 394 nYVGpeYD--ARVERYRRRFEEILGN 417
                   54543345..9************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3003.88
//
Query:       CDO68542.1  [L=556]
Description: hypothetical protein BN946_scf184998.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-40  138.3  55.9    4.3e-37  127.9  58.0    2.9  2  MFS_1         Major Facilitator Superfamily
  ------ inclusion threshold ------
        9.5    6.0  14.9       0.12   12.2   2.1    3.2  3  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9  58.0   4.8e-41   4.3e-37       2     352 ..      43     441 ..      42     442 .. 0.86
   2 ?    0.5   0.0     0.025   2.2e+02     148     187 ..     463     502 ..     460     531 .. 0.72

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 4.8e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +la+fl a++ s+l++a+p  l  +l +s++e  ++++++ l++a + l+ Gr+sd + +  v +lg+l+ ++g  + +  s ++ l+vlr+l+G++a+
  CDO68542.1  43 CLAQFLDAFNNSALFSAIP-SLVISLDMSEAESTWIISAFQLTFASFLLISGRISDVYNPSGVAVLGILSIGAG--FVT--SKIP-LIVLRALSGIAAS 135
                 799****************.6666777*******************************8888************..444..5555.************* PP

       MFS_1 101 alfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 + +p++++l++ +f++ +e++raig+++++ ++G +lg  +g++++++++W++vf+++a+v+l  + + ++l+p+ +p+ +  ++++e           
  CDO68542.1 136 MTIPSALTLLVNVFTEpNEQARAIGIFGGCGAVGNVLGLTIGAIFVQYASWSWVFWFVALVALPIAAICIILIPAQEPRLEDIAGRREArwksldivgv 234
                 ****************99***********************************************9988999999999999999999999********* PP

       MFS_1 189 ..............................................kgtgpaplvpawkallkdpvlw.....illialllfffgfsg..lltllplyl 234
                                                                         +  +   +p  w     ++l++ +l   ++++  ++++++l+ 
  CDO68542.1 235 siltaalilfifaitsgttsgwasatvlaplvisvfmvagffyyetTI--------PADKAAIPPRTWflpnfSVLFGTALLPYFWWTtvFTIYTTLW- 324
                 ************999998877665555555555555554444443222........222222333345555554555555555555556778888888. PP

       MFS_1 235 qevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappe 332
                 q+  ++s   +++++ +l+  v a+++ ++g ls+ ++++++ ll+ + +l+a+++la++  ++ ++ ++++ +++G  g+ ++++  + ++ +  p++
  CDO68542.1 325 QDIWHWS--AISTAVHMLPIGVLAFSMSFTGSLSRVINPKWIVLLGESMCLVATVLLAFADQPDRYWSFIFPAFILGSgGSMLTYTHTNIAIFRTSPAS 421
                 *******..555558999999999999***************************************************777777*************** PP

       MFS_1 333 eagtasglfntagslggalg 352
                 +agt+ ++fn a +lg+a+g
  CDO68542.1 422 MAGTVGAIFNGALQLGSAVG 441
                 *****************998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.025
       MFS_1 148 lgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +g +a+f++l +v ++ ++ +l+++++++   + + ++  
  CDO68542.1 463 AGRQAAFWFLLAVVCVEMMSMLVFYRRSKEGAAQELDVSA 502
                 5668999999999999999666888777766666555554 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.1   1.3e-05      0.12      46     145 ..     102     214 ..      98     230 .. 0.76
   2 ?    1.8   0.2      0.02   1.8e+02     117     140 ..     357     383 ..     320     389 .. 0.79
   3 ?   -1.3   0.4      0.19   1.7e+03     101     143 ..     450     492 ..     419     516 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
  Trp_oprn_chp  46 talAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaave....lta.........wpvlalaggvll 129
                     +A++++ ++ A +++ ++ ++v+ +l  +a+ +++ +al+ll++  +  +++a+a + + +  a  +    +           w ++    ++++
    CDO68542.1 102 SGVAVLGILSIGAGFVTSKIPLIVLRALSGIAASMTIPSALTLLVNVFTEPNEQARAIGIFGGCGAVGNvlglT-IgaifvqyasWSWVFWFVALVA 197
                   5789*****************************************98777777777777776666666666650.2556666666999987666665 PP

  Trp_oprn_chp 130 l.lagvllllrarswpa 145
                   l +a++ ++l ++++p+
    CDO68542.1 198 LpIAAICIILIPAQEPR 214
                   52777777777766655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.02
  Trp_oprn_chp 117 a...wpvlalaggvllllagvllllra 140
                       + +++l+g  ++l+a vll+ + 
    CDO68542.1 357 RvinPKWIVLLGESMCLVATVLLAFAD 383
                   1444889***************99765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.19
  Trp_oprn_chp 101 aaatgvasaaaaveltawpvlalaggvllllagvllllrarsw 143
                   +++++++++ ++++  +++   l++ v++ + ++l++ r +++
    CDO68542.1 450 SSVEATHGGPQSYAGRQAAFWFLLAVVCVEMMSMLVFYRRSKE 492
                   3334444555555544566666666677766666666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 3702.43
//
Query:       CDO68543.1  [L=218]
Description: hypothetical protein BN946_scf184998.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.7  12.2    2.6e-09   37.0  12.2    1.4  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
        0.1   12.9  10.8       0.19   12.1  10.8    1.4  1  zf-C6H2   zf-MYND-like zinc finger, mRNA-binding


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  12.2   2.9e-13   2.6e-09       1      38 []       8      49 ..       8      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.9e-13
                -TTT--...B-SCE-TTTS-S..EESSHHHHHHCHHHHCCCH CS
     zf-MYND  1 CavCgk..aealkkCagCksv..fYCskeCqradwksHkteC 38
                C++Cg+   e lk C++C+ +   YCskeCq a+wk Hk+ C
  CDO68543.1  8 CSKCGRspPEGLKACSKCHGAtgIYCSKECQVAHWKLHKKIC 49
                ******7777777*****977669*****************9 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  10.8   2.1e-05      0.19       4      44 ..       9      48 ..       7      51 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
     zf-C6H2  4 seCgkeass.Lq.CptClklgikesfFCsqeCFkknwkkHkal 44
                s+Cg+++ + L+ C +C+  g +  ++Cs+eC  + wk Hk++
  CDO68543.1  9 SKCGRSPPEgLKaCSKCH--GAT-GIYCSKECQVAHWKLHKKI 48
                678655544454399995..544.89**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1616.69
//
Query:       CDO68544.1  [L=732]
Description: hypothetical protein BN946_scf184998.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-56  191.3   2.9    1.4e-56  191.3   2.9    1.7  2  DnaJ-X        X-domain of DnaJ-containing
    2.2e-42  145.4   0.1    6.2e-36  124.2   0.0    3.6  3  tRNA-synt_1b  tRNA synthetases class I (W and Y)
    4.5e-13   49.1   0.5    4.5e-13   49.1   0.5    3.1  3  DnaJ          DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.9      0.86   5.1e+03     191     204 ..      94     107 ..      86     135 .. 0.42
   2 !  191.3   2.9   2.4e-60   1.4e-56       2     206 ..     143     344 ..     142     348 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.86
      DnaJ-X 191 fqkakrtekeeeea 204
                 +++a ++e eeee+
  CDO68544.1  94 MKAALQEEGEEEER 107
                 33333333332222 PP

  == domain 2  score: 191.3 bits;  conditional E-value: 2.4e-60
      DnaJ-X   2 eereeeLakkLrekLspyveadkke....etesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfkt 96 
                  er+++L+++L+ kLs+++e++++     + esF++ ++ eae+Lk+es+G+++lh++G++Y +kAk++l+s+q+flg+gg++++v+ k +v+ +t++t
  CDO68544.1 143 AERVKKLVENLVHKLSIFTESATSPndtqVSESFRTICKLEAEELKKESYGVDLLHAVGFVYAQKAKHYLASSQTFLGMGGWLHNVQGKYHVISETVST 241
                 79*******************996678999********************************************************************* PP

      DnaJ-X  97 vssaldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGeifqkak 195
                 v++a++++s++e+++ ++ ++        + ++ee++ +e+++++k L +++kg k+eIes+lre cd+vL+D+++++e+   RA aL+ilGe + +++
  CDO68544.1 242 VRAAMELKSVFEQIQAAEMAG--------NLSPEEKQRLEEQAAEKGLRTLFKGAKLEIESVLRETCDRVLEDPDIPREKAQLRAVALQILGEAYLSVR 332
                 **************9999999........9********************************************************************* PP

      DnaJ-X 196 rtekee.eearv 206
                 ++e+e  ee+++
  CDO68544.1 333 KEEDERrEESEM 344
                 *****9887765 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6      0.54   3.2e+03     230     269 ..     106     142 ..      92     165 .. 0.62
   2 !   15.4   0.0   1.5e-06    0.0087      18      46 ..     383     411 ..     373     419 .. 0.93
   3 !  124.2   0.0     1e-39   6.2e-36      97     292 ..     453     683 ..     449     684 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.54
                   TCSHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHH CS
  tRNA-synt_1b 230 deevekllklktelsnelierleavsgkkpkreaeellae 269
                   ++ v+++ k+k  ls+e+  r e+  +k     ae+ +a+
    CDO68544.1 106 ERVVQRDAKGKEILSPEEKARREEKARKIA---AEKAAAR 142
                   457788888888888877777666666555...2222222 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.5e-06
                   -BGGGHHHHHHHHHHHHTTSEEEEEEEHH CS
  tRNA-synt_1b  18 lHlGylvplkklvelqkaghevffliaDl 46 
                    H+Gy+vpl+k++++++ag+ev++l+a+ 
    CDO68544.1 383 AHIGYFVPLTKIADFLRAGVEVTILLAGS 411
                   5*************************985 PP

  == domain 3  score: 124.2 bits;  conditional E-value: 1e-39
                   HHHHHHHHHHHTTCBHHHHHHHHH.CCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-EEEEET-BB CS
  tRNA-synt_1b  97 lelaellrdlgklgslnrmlqfks.vkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkkevfkkpegltvpllt 192
                   +e++ +  +l  +++ ++  ++ + v+k++e+ +   l+ ++Yp Lqa+D+++l+ d+++gG DQ++++++++ +++r+++k    k+ +l++p+++
    CDO68544.1 453 KEYNLDNYRLCAIVTEHDAKKAGAeVVKQVES-P--LLSGLLYPGLQALDEQYLDCDFQFGGVDQRKIFTFAELYLPRLGYK----KRAHLMNPMVP 542
                   56777777778888888888887778999999.4..8********************************************9....*********** PP

                   STTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTC..SHHHHHHHHHTHHH........................................CH CS
  tRNA-synt_1b 193 gldGekKmSKSagnsaIfLddekesvkkkiqkavtdsde..evekllklktelsn........................................el 247
                   gl+G+ KmS+S++ns+I+ +d +e v++ki+ka+++ ++  e++ l+++  +l +                                        + 
    CDO68544.1 543 GLSGG-KMSSSDPNSKIDFLDAPEVVRSKIKKAFCEEGNveENGVLSFVEAVLMPisqlrierqkgltgadadegaaatgdqtpfvlegapegtvFS 638
                   *****.*********************************9999999999999999**************************************8888 PP

                   HHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 248 ierleavsgkkpkreaeellaeevtklvhggdlkkalaealnell 292
                   i r e ++g+  ++++e+l++++++k++h++dlk a+a+a+ +ll
    CDO68544.1 639 IFRKEDFGGSLHYSSFEQLKEDYKEKKLHPKDLKTAVADAIVRLL 683
                   888888999988*****************************9998 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.5   7.5e-17   4.5e-13      23      63 .]      12      52 ..      11      52 .. 0.97
   2 ?   -2.9   0.1       1.4   8.1e+03      14      31 ..     654     669 ..     651     678 .. 0.71
   3 ?   -1.8   0.3      0.58   3.5e+03      22      42 ..     697     716 ..     693     722 .. 0.66

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 7.5e-17
                HHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ 23 klalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +la+k+HPDkn++dp aee+Fkei+ Ay++Lsdp  R++Y+
  CDO68544.1 12 RLAIKHHPDKNRDDPHAEERFKEIAIAYQTLSDPALRRKYN 52
                79**************************************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHSTT CS
        DnaJ  14 edeIkkaYrklalkyHPD 31 
                  +++k+ Y++  +k+HP 
  CDO68544.1 654 FEQLKEDYKE--KKLHPK 669
                 5677888876..577885 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.58
                 HHHHHHHSTTTSCCHHHHHHH CS
        DnaJ  22 rklalkyHPDknpkdpeaeek 42 
                 +k  +  +PD n  +pe+++k
  CDO68544.1 697 QKVEKLAYPDPN-AKPEKTKK 716
                 66677889**88.44544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5098.78
//
Query:       CDO68545.1  [L=241]
Description: hypothetical protein BN946_scf184998.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-28   98.4   0.0    8.8e-28   97.6   0.0    1.3  1  FtsJ      FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   4.9e-32   8.8e-28       1     107 [.      41     227 ..      41     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 4.9e-32
                 CCCCHHHHHHHHHHHHT-S-..TT-EEEECT-TTSHHHHHHCCT....................................................... CS
        FtsJ   1 yrsRsayKLleidekfklfk..pgktvvDlgaaPGgwsqvllqrl...................................................... 43 
                 yrsRsa+KLle+d+ +++++  +++tv+DlgaaPGgwsqv++ ++                                                      
  CDO68545.1  41 YRSRSAFKLLELDKDYHFLTtaHVRTVIDLGAAPGGWSQVVAGKFgwagwdphtrilpatptgkdakgqsegedgeqlawssgrktktvkktkasaetg 139
                 9****************88767999****************7777777777777777777777777888888888888888888888888889999999 PP

                 .....................T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHH....SSEEEEEE--S-SS-CHHHHHH CS
        FtsJ  44 .....................gakgkvvavDlqpmaplpgvttiqgditdpetiekikealse....rkvdlvvsDgapdvsgvhdlde 107
                                      g +g ++avDl  m+p+pgv+t+q+d+++ e+ e+i+ +l e     k+d+v+sD+a + +g+ + d+
  CDO68545.1 140 evaddypdladldaedvsrpvG-RGTIIAVDLLRMEPIPGVKTVQMDFLSSEADETINSLLIEaggdGKADVVLSDMAANFTGNPTADA 227
                 9999998888888777665544.499*****************************99977777777799**************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1942.72
//
Query:       CDO68546.1  [L=132]
Description: hypothetical protein BN946_scf184998.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-07   29.3   0.0    1.1e-06   28.7   0.0    1.3  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    8.1e-05   22.7   0.2    0.00017   21.7   0.1    1.6  2  TAF            TATA box binding protein associated factor (TA
    0.00022   21.6   0.0    0.00033   21.0   0.0    1.4  1  CENP-S         CENP-S protein
     0.0016   18.7   0.1     0.0033   17.7   0.0    1.7  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0032   17.8   0.1     0.0039   17.6   0.1    1.3  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
       0.06   13.4   0.5       0.83    9.7   0.0    2.1  2  Bromo_TP       Bromodomain associated
      0.098   12.7   0.0       0.13   12.4   0.0    1.2  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.3e-10   1.1e-06      20      79 ..      66     125 ..      49     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.3e-10
    CENP-T_C  20 fakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 
                    ++g  ++++   ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +kr ++
  CDO68546.1  66 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGR 125
                 333445666888888888999999********************************9875 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.7e+03      29      46 ..      37      57 ..      32      71 .. 0.58
   2 !   21.7   0.1   6.5e-08   0.00017      17      66 .]      72     121 ..      56     121 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
                HHHHHH...HHHHHHHHHHHH CS
         TAF 29 Laedve...yrlkeivqeaak 46
                La+dv+    r ++i ++ ++
  CDO68546.1 37 LAHDVRggaKRHRKILRDNIQ 57
                666665222455666666665 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 6.5e-08
                 T---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  17 GitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66 
                 G++ +s    ++    +++ l +++++++ +++h+kR++ t+ Dv +AL+
  CDO68546.1  72 GVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 121
                 55555555555555556667899*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   0.00033      38      73 ..      80     123 ..      50     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
      CENP-S  38 vykq........lenlakDLeaFakHAkRstittdDvlLlaRrn 73 
                 +y++        len+ +D  ++ +HAkR+t+t+ Dv+  ++r+
  CDO68546.1  80 IYEEtrgvlkifLENVIRDSVTYTEHAKRKTVTALDVVYALKRS 123
                 55555555555589999*********************999886 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0033      31      65 .]      86     120 ..      57     120 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                    HHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  31 ecveefieelaseAaeickkekrKtikaehiklAv 65 
                     +++ f+e + + ++ +++++krKt++a ++  A+
     CDO68546.1  86 GVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYAL 120
                    56889*************************98876 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.5e-06    0.0039      95     129 ..      87     121 ..      46     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  95 alEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +l+ +l+ +  ++  +++haKR+T+t+ D+  A++
  CDO68546.1  87 VLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 121
                 67899*************************99987 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.11   2.8e+02      11      28 ..      18      35 ..      13      35 .. 0.85
   2 ?    9.7   0.0   0.00033      0.83      35      70 ..      87     122 ..      81     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.11
                HHHHHHHHHT-SEE-HHH CS
    Bromo_TP 11 vvsqileeaGfdsaeesa 28
                +v++ ++++G+  ++esa
  CDO68546.1 18 SVAAFTTTCGYGMVTESA 35
                79*********9988876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP  35 iaqkYirelgeqaksfaehagRseptlkDvvltLqe 70 
                 +++ +++++ ++   + eha R ++t  Dvv +L++
  CDO68546.1  87 VLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKR 122
                 566677888888889*******************97 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05      0.13      38      69 ..      91     122 ..      62     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
  TFIID-31kDa  38 ytssvLedAkvlaehakkkevslddvrlAiqs 69 
                  +  +v++d+ ++ ehak+k+v++ dv  A++ 
   CDO68546.1  91 FLENVIRDSVTYTEHAKRKTVTALDVVYALKR 122
                  7789**********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1021.53
//
Query:       CDO68547.1  [L=223]
Description: hypothetical protein BN946_scf184998.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-16   59.7   0.0    4.1e-16   58.6   0.0    1.5  1  TFIIIC_sub6  TFIIIC subunit triple barrel domain
  ------ inclusion threshold ------
      0.026   14.2   2.2      0.036   13.8   2.2    1.2  1  Pns11_12     Non-structural protein 11 and 12


Domain annotation for each model (and alignments):
>> TFIIIC_sub6  TFIIIC subunit triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   4.5e-20   4.1e-16       3      94 .]      28     120 ..      26     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 4.5e-20
                  EE..EEEEEESSTT----T.....T-EEEEE-TTSSS-EEEETTEEEEEEEE--SSEEEEEE-S---............--EEE-S-EEEEEEE--- CS
  TFIIIC_sub6   3 tEtvyvtlDlsspefaeraeeeeakkdlqilgLdtenPlisigdkvfeGeweeliGTelifeddddaalrklee.....ellaasskrikltevklk 94 
                  +E +yvtlDl++ e +  +    ++++++i+gLdt++P+++  ++ ++G+++ l+GTel+f++++d++ +++++       +a+++ ri ++e++lk
   CDO68547.1  28 EEVEYVTLDLGTIEPTLVP----SSSSFRIIGLDTPTPYLQLSGTKLKGQHQSLLGTELLFTEASDESQQHSAHgkkplVPVATTERRIRFKEIELK 120
                  6888**********99988....****************************************998844444445567899************9985 PP

>> Pns11_12  Non-structural protein 11 and 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.2   4.1e-06     0.036     109     178 ..     128     198 ..     108     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-06
    Pns11_12 109 tkddsndrkkakaskdkkveka.srdrkdksrskGkgsfkknGkdrreedkrdeysednsykseeelsede 178
                 t + s   +k+ ++k+ k++     + ++ ++ +G+g+ k++G  + ++  +   ++    k   +   d+
  CDO68547.1 128 TDVPSASTSKSTTAKKVKTQMDhVMGNHSDTPRRGRGGKKRGGTTKAQTPTQSRVASSTGRKESVDEPTDQ 198
                 566778888888888888886514699999**************999999998887776655443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1645.52
//
Query:       CDO68548.1  [L=557]
Description: hypothetical protein BN946_scf184998.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-31  109.6  45.4    1.6e-31  109.6  45.4    1.9  2  MFS_1        Major Facilitator Superfamily
    1.6e-07   31.0   5.3    1.6e-07   31.0   5.3    1.8  2  MFS_4        Uncharacterised MFS-type transporter YbfB
    1.8e-07   30.4  11.6    1.8e-07   30.4  11.6    2.5  2  Sugar_tr     Sugar (and other) transporter
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.21   11.7   0.0    1.4  1  S10_plectin  Plectin/S10 domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6  45.4   3.5e-35   1.6e-31       9     352 ..     110     488 ..     100     489 .. 0.80
   2 ?    2.0   2.4     0.017        77     215     272 ..     473     530 ..     456     541 .. 0.55

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 3.5e-35
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpag 106
                 ++a+s+   ++p  +++++ +   ++ l ++l+ +g++v+ l++G+ls+ +Gr++v+l+++l++  + + +++ s+ +  +l++r+l G +a+a ++++
  CDO68548.1 110 TFASSAPEGIIP-DMMRQFAFGQEVATLTISLFVAGYCVGPLLWGPLSETIGRKPVFLISFLVYTGFQVGCAL-SQNTaSILIFRFLGGTFAAAPLANS 206
                 455566667788.99****************************************************777777.666669******************* PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee............kgtg 192
                 +a+++d++  + rg+a++l++++  +G+ lgp + g++a s ++Wr+v+++l++++  ++v  +l lpe+ ++   ++ ++++                
  CDO68548.1 207 GAVMSDIWDADTRGKALALFTLAPFAGPTLGPTVTGFMAvSGISWRWVYWLLTFFAGACLVATALTLPETFVPILLVKRAQRLrkqtgdsrywapLE-- 303
                 *************************************************************999999999999999988888888666554444422.. PP

       MFS_1 193 paplvp.......awkallkdpvl.w....illialllfffgfsg...lltllplylqevlgls....glllaglllallalvgail..allagrlsdr 270
                                k++l +p++ +    +l+++ l+++f++     l+   p+ + e ++++    gl  +   + +++++g++   a++ +r+ + 
  CDO68548.1 304 -----RnkmtfsqRVKHVLGRPFIiLalepMLIAITLYMSFIYGCmylLFEAYPIVFTEGHHFNlgftGLTFLP--IFVGGVIGVFTylAFFNARYTRA 395
                 .....155666668999999998851557655555555554444433377777777899999998444433444..33333333333445555565544 PP

       MFS_1 271 ........lgrrrrlllallllllaalglallavtssavllllvlvl....iGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                         ++++ rl l l +  ++a++++++++ts +++++++ ++    +G+  ++++ ++++++++ ++    a++a++ +++++sl ga +
  CDO68548.1 396 iqafaphpVPPEYRLELCLWASPMFAICFFWFGWTSYPWISYWAPLMagvpLGLsIVFLFLGLFNYVIDAYL--FVAASALSSMTVIRSLFGASF 488
                 89999888888************************9999999977775656777666666888888888888..999999999999999877655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.017
       MFS_1 215 alllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlg 272
                 al +++++ s++ + +pl++ + ++  +   a++ll+ +a+++a++ +++ ++ +++ 
  CDO68548.1 473 ALSSMTVIRSLFGASFPLFATQMYNTLNPRWASTLLGCIAVLMAPIPFVLRKYGHHIR 530
                 2222222333366666666555555553344444466666666666666666555544 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   5.3   3.6e-11   1.6e-07      15     171 ..     119     275 ..     115     293 .. 0.88
   2 ?   -2.1   1.1      0.42   1.9e+03     313     355 ..     471     513 ..     434     518 .. 0.53

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 3.6e-11
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaa 112
                 i+P+++++  +    a l  +   +GY vG ll    ls+   R    l++ l+ +   + +al ++ a +l+ Rfl G  +A+ l   ++++     a
  CDO68548.1 119 IIPDMMRQFAFGQEVATLTISLFVAGYCVGPLLW-GPLSETIGRKPvFLISFLVYTGFQVGCALSQNTASILIFRFLGGTFAAAPLANSGAVMSDIWDA 216
                 89******************************88.667777777666999**********************************999888888887888 PP

       MFS_4 113 arrervgall....faGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpr 171
                   r++ +al+    faG+ lG  v+g +++     g s+ +++++l+ ++ + l++ al+lp+
  CDO68548.1 217 DTRGKALALFtlapFAGPTLGPTVTGFMAV----SGISWRWVYWLLTFFAGACLVATALTLPE 275
                 888888888766669999999999998775....67788999999999999999999999994 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.42
       MFS_4 313 rrllglmTasfgigQilGpllasllaeatgslalallvaaaal 355
                   +l+ mT++  ++ +  pl a  ++++++   +++l++  a+
  CDO68548.1 471 ASALSSMTVIRSLFGASFPLFATQMYNTLNPRWASTLLGCIAV 513
                 3456666666666666666666666666666666666665555 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4  11.6     4e-11   1.8e-07      48     212 ..     134     296 ..     128     392 .. 0.81
   2 ?   -8.6  13.3         4   1.8e+04     351     414 ..     413     475 ..     336     498 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 4e-11
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                  +l+ s+f++G  +G l+ g+l++++GRk+++li+ +++   +v +a+++   ++  +++ R+l G ++ +  + +   +s i  ++ Rg+   l+ la
  CDO68548.1 134 ATLTISLFVAGYCVGPLLWGPLSETIGRKPVFLISFLVYTGFQVGCALSQ---NTASILIFRFLGGTFAAAPLANSGAVMSDIWDADTRGKALALFTLA 229
                 57999*********************************************...99******************************************** PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---..HHHHHHTT-HHHHHHHHH CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPES..Prylvekgkeeeakevla 212
                   +G  ++ +++ +++ ++    wr+  +l  ++a + l++  l+lPE+  P  lv++ ++ + +++ +
  CDO68548.1 230 PFAGPTLGPTVTGFMAVSGI--SWRWVYWLLTFFAGACLVATaLTLPETfvPILLVKRAQRLRKQTGDS 296
                 ********998877766665..8999999998888877665549****944444444444444444333 PP

  == domain 2  score: -8.6 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH CS
    Sugar_tr 351 vaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig 414
                 ++ +  ++ i++f +gw++ pw+        +v +++l+i++    l+n++i     ++++a++
  CDO68548.1 413 CLWASPMFAICFFWFGWTSYPWISYWAPLMAGV-PLGLSIVFLFLGLFNYVIDAYLFVAASALS 475
                 6667779999***********987655444444.888888888888888888777777777766 PP

>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.7e-05      0.21      57      91 ..     249     284 ..     242     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
                  EETTEEEEEE-H.HHHHHHHHHHXXXXSXHHHHHXX CS
  S10_plectin  57 faWrhyYytLtn.eGieylreylhlpeeivPatlkk 91 
                   +Wr++Y++Lt   G   + + l lpe+ vP  l k
   CDO68548.1 249 ISWRWVYWLLTFfAGACLVATALTLPETFVPILLVK 284
                  69*********648999999***********87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3988.56
//
Query:       CDO68549.1  [L=206]
Description: hypothetical protein BN946_scf184998.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.49   11.0   5.6        1.3    9.7   5.7    1.6  2  Hydrophobin  Fungal hydrophobin
       0.85    9.2  12.6        1.6    8.4   1.4    3.3  3  PT           PT repeat


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6      0.09   8.1e+02      56      66 ..      48      58 ..      41      66 .. 0.76
   2 ?    9.7   5.7   0.00014       1.3       5      79 ..      52     132 ..      48     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.09
  Hydrophobin 56 sCtqqpvCCen 66
                  C ++  CC++
   CDO68549.1 48 DCMSSLECCQQ 58
                 57777777764 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00014
  Hydrophobin   5 evqCCnsvqkakd.ssavkkll.gllgl....elkdltgqvgltCspinvvgvgggssC..tqqpvCCennsfnglinlgCtp 79 
                  +++CC+++ +     ++ ++ll  ll +     l  l    gl Cs+ +   +  g++C    ++vCC+++    +++ gC  
   CDO68549.1  52 SLECCQQILTLPIiPASFTSLLsALLPIsapvPLPTLGPRAGLLCSAATDADI-LGNQClaGGTAVCCQDSFL-DIVAEGCQE 132
                  67899998765445344555555666664433556666788999*99987766.49***88899*****9755.999999975 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4       1.2   1.1e+04      22      23 ..      86      87 ..      80      90 .. 0.45
   2 ?    7.9   2.7   0.00024       2.1       6      34 ..     155     183 ..     147     185 .. 0.56
   3 ?    8.4   1.4   0.00018       1.6       6      34 ..     171     199 ..     169     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.2
          PT 22 PT 23
                PT
  CDO68549.1 86 PT 87
                33 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00024
          PT   6 PtaqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 Pt+ P   PT  P + PT+ P++ Pt+ P
  CDO68549.1 155 PTSLPISIPTSLPISIPTSLPISLPTSLP 183
                 45555555666666666666666666665 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00018
          PT   6 PtaqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 Pt+ P   PT  P + PT+ P++ Pt+ P
  CDO68549.1 171 PTSLPISLPTSLPISLPTSLPISLPTSLP 199
                 66666677888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1447.45
//
Query:       CDO68550.1  [L=300]
Description: hypothetical protein BN946_scf184998.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.4  18.6      0.039   13.5   3.0    4.3  4  PT        PT repeat


Domain annotation for each model (and alignments):
>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.0     0.089   1.6e+03      18      23 ..     194     199 ..     192     201 .. 0.40
   2 ?    5.9   0.1   0.00051       9.1      22      35 ..     237     250 ..     233     251 .. 0.89
   3 ?   13.5   3.0   2.2e-06     0.039       2      35 ..     245     278 ..     245     279 .. 0.95
   4 ?    5.0   2.7   0.00095        17      14      35 ..     273     294 ..     273     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.089
          PT  18 PtaqPT 23 
                 P++ PT
  CDO68550.1 194 PSPSPT 199
                 333333 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00051
          PT  22 PTdqPtaqPtdaPt 35 
                 PT+ P+++Pt+ P+
  CDO68550.1 237 PTSLPISVPTSLPI 250
                 9**********996 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.2e-06
          PT   2 ptaqPtaqPTvqPTgqPtaqPTdqPtaqPtdaPt 35 
                 pt+ P + PT+ PT  P + PT+ P++ Pt+ P+
  CDO68550.1 245 PTSLPISIPTTIPTSLPISIPTSLPISLPTSLPI 278
                 8999999************************996 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.00095
          PT  14 PTgqPtaqPTdqPtaqPtdaPt 35 
                 PT  P + PT+ P++ Pt+ Pt
  CDO68550.1 273 PTSLPISIPTSLPISIPTSLPT 294
                 6777777788888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2277.38
//
Query:       CDO68551.1  [L=544]
Description: hypothetical protein BN946_scf184998.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-52  179.0   0.0    2.5e-45  155.1   0.0    2.3  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.1e-09   9.2e-05       3      69 ..      41     107 ..      38     124 .. 0.87
   2 !  155.1   0.0   1.4e-49   2.5e-45      91     437 ..     148     502 ..     142     522 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.1e-09
                 SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEE.ETTEEEEEEESHHHHHHHHCTSTTTTCEE CS
        p450   3 gptplplvgnllqlgrkeelhevlrklqkkygpifrlk.lgskpvvvlsgpeavkevlikkgeefsgr 69 
                 +p + +l g+l+ql  +++ + ++++l+ +ygp+ rl+ + ++p+  +++p a++++  k+++ f+ +
  CDO68551.1  41 PPARSWLAGHLPQLY-DKQGWAFHHELHARYGPVSRLQgMLGQPMLCVYDPLAMHSIVLKDQHVFEEM 107
                 45599*********9.6999*****************84678***************99998888775 PP

  == domain 2  score: 155.1 bits;  conditional E-value: 1.4e-49
                 GHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCH CS
        p450  91 ngekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledeklselvkaveelssllsks 187
                 +ge+++k+R++l+p + ++ +l +l++++ e++ +l ++++ +++  +  +d+++++ +aal+v+g+ ++g++fd l++e+   + +av+  +      
  CDO68551.1 148 AGETHRKQRKLLNPVFSTK-NLrRLTPVFYEVVGRLKNAIKARVDLGAsDVDMAQYMGRAALEVVGKATLGHSFDPLTEERHDPYAEAVKSFV------ 239
                 689****************.888*********************988889******************************9999999999993...... PP

                 HHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC......SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHH CS
        p450 188 svqllllfpllkylptkllrklkeavkklkdlldklieerretldsa......kksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTts 279
                         pl+  lp++  +++ ++v++++  + ++  +r+++          +++ +d++ +ll a   +++++  l ++el a++  l f ++dT+s
  CDO68551.1 240 ----PVRRPLMNLLPSRRVKRFLNVVDTMHSSAVMIYSQRQREAAALgyapedDEKAKDLITILLRANaGASEED-MLPEDELIAQLSILVFVATDTSS 333
                 ....4445555566666666666666666766666666666666666666666559***********96555554.8********************** PP

                 HHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT..T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS............CEEETT......EEE- CS
        p450 280 stlswaLyeLaknPevqeklreEidevlgdkr..eptyddlqklpyldavikEtLRlhpvvplllpRevtk............dvvirg......ylip 358
                 ++l+ ++  La++P+vq++lr E+ e+ ++ +  ++ yddl++lpyldav++EtLR   ++ l+l Re+                   +        +p
  CDO68551.1 334 NALTLIFERLAEHPHVQDRLRAEVVEARRKYEggQIPYDDLMSLPYLDAVVRETLRVNVPAQLRL-REARAdailplskpvqgR----DgsliesIPVP 427
                 ************************9999776678****************************777.999984444443333330....245555699** PP

                 TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEE CS
        p450 359 kGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevel 437
                  Gt+v+v ++a + +++++ p++ e +peR+l+     +   +a++P   G+ + +G ++ ++e+k ++a lL  F +e 
  CDO68551.1 428 NGTVVFVAIQASNVSEDLWgPDAREWRPERWLEPLP--ETVTEASIP---GVYSNLGFKFSQLEIKSIIAELLPMFMFER 502
                 **********************************65..4899*****...***********************9999983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3878.16
//
Query:       CDO68552.1  [L=262]
Description: hypothetical protein BN946_scf184998.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-21   75.2   0.0    6.4e-21   74.7   0.0    1.1  1  adh_short       short chain dehydrogenase
    4.9e-16   59.0   0.0    6.4e-16   58.6   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    0.00059   19.8   0.0     0.0012   18.8   0.0    1.5  1  KR              KR domain
     0.0023   17.4   0.0      0.003   17.0   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.056   13.3   0.0       0.11   12.4   0.0    1.8  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   1.8e-24   6.4e-21       4     185 ..       5     197 ..       3     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.8e-24
                 EEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.........S--SS CS
   adh_short   4 lvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.........tgsgp 92 
                 +vtG s+GIG+++a++l ++  ++v+ + r+++++ ++++  ++ + ++++i++D+ d+++ve  v k+    g+ld L+nNA+            + p
  CDO68552.1   5 VVTGVSRGIGLEYANQLTRDANNLVFgLVRNPQNAPKLLEL-QKSRPNLHIIKADIVDAAAVE--VGKV--TGGSLDYLINNAAQvitersgltLTTYP 98 
                 8*******************999999899999999888765.555799********9887765..3333..56***********99***999998899* PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG......TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short  93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvag......kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                  +el ee+  + + +N++gv++++  +lp + k+ + +++  s  ++      k ++  +a+Y+ sKa+++  + + a el+++g +  a+ PGlvd +
  CDO68552.1  99 SEELLEEDLLEAFRINVVGVVHTINVFLPLLRKGAAKKVISLSTGIAdndttlKAGFTIQAPYCISKAGLNNAVAKYAAELRDEGFTFLALSPGLVDVA 197
                 *******************************************998832222235778899***********************************965 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.8e-19   6.4e-16       1     178 [.       8     198 ..       8     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.8e-19
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.......CSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapk.......lkgpfl 88 
                   G+ +gIG + A +l +   ++v+  +++ + + ++ el+++ ++  ++++D+ d ++ve      + + g+lD+l+nna+ + +        + p +
    CDO68552.1   8 GVSRGIGLEYANQLTRDANNLVFGLVRNPQnAPKLLELQKSRPNLhIIKADIVDAAAVE----VGKVTGGSLDYLINNAAQVITersgltlTTYPSE 100
                   999********************999999989999999999887658****99987765....3344459**********98887777776667778 PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGT......SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgae......rvvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   e+ +e++ +a+ +n+ +++++++ +lpl+++g   +++ ls   a        +++ ++ y+++Ka+l++ +   A+el ++g +  a spg+++  
    CDO68552.1 101 ELLEEDLLEAFRINVVGVVHTINVFLPLLRKGaaKKVISLSTGIADndttlkAGFTIQAPYCISKAGLNNAVAKYAAELRDEGFTFLALSPGLVDVA 197
                   8899***************************9888899998754431111114577777***********************************954 PP

                   G CS
  adh_short_C2 178 a 178
                    
    CDO68552.1 198 E 198
                   3 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.4e-07    0.0012       2      69 ..       3      66 ..       2      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.4e-07
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHH CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdave 69
                +y++tG   g+Gle a++l +++++ +  l R+    ++++ ++ el+++  + ++++aD+ d++ave
  CDO68552.1  3 SYVVTGVSRGIGLEYANQLTRDANNLVFGLVRN----PQNAPKLLELQKSRPNLHIIKADIVDAAAVE 66
                6*********************99999999999....344456999*******************997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.5e-07     0.003       2     159 ..       5     178 ..       4     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.5e-07
                 EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl.....elveldltdrsalerlfkee.qpdavihlAavggvaassedpadfieknlq 93 
                 +VtG++  iG   +++l +   + v gl r++++ ++ ++ ++     +++++d+ d++a+e    +    d+ i+ Aa+   + +s     ++ +   
  CDO68552.1   5 VVTGVSRGIGLEYANQLTRDANNlVFGLVRNPQNAPKLLELQKsrpnlHIIKADIVDAAAVEVGKVTGgSLDYLINNAAQVITE-RSGLTLTTYPSEEL 102
                 79******************9888999999977766665555589**************77643333349*******9954444.4555578889999* PP

                 HHHHHHHHHH..................HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHH CS
   Epimerase  94 gtlnlleaar..................kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaq 159
                 +  +llea r                  k  +k+++ ls+  +        +++ttl+  +  + pY ++K+   + v +yaa+
  CDO68552.1 103 LEEDLLEAFRinvvgvvhtinvflpllrKGAAKKVISLST-GIA-------DNDTTLKAGFTIQAPYCISKAGLNNAVAKYAAE 178
                 **********999999998888888884445557777777.333.......44556666788999******9999999999886 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05      0.11       1      55 [.       8      66 ..       8     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH....CTTTCEEEE--TT-CCHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele....aeeglevvegdvtdvedla 55
                    G + ++G + +++l ++ +  v  lvRnp+ +++l     ++++l+++++d+ d+++++
      CDO68552.1  8 GVSRGIGLEYANQLTRDANNLVFGLVRNPQNAPKLLelqkSRPNLHIIKADIVDAAAVE 66
                    557789***********9888999******9996543444569***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1949.97
//
Query:       CDO68553.1  [L=89]
Description: hypothetical protein BN946_scf184998.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 652.24
//
Query:       CDO68554.1  [L=242]
Description: hypothetical protein BN946_scf184998.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-23   83.4   9.0    2.1e-23   82.8   9.0    1.3  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   9.0   1.1e-27   2.1e-23       1      80 []     160     238 ..     160     238 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.1e-27
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  Cntg++qCC++vq+ak s++++++++ lg++  ++tg  g++Cspi+++ +ggg+sCtq pvCC+nn+++glin+gC+pi
   CDO68554.1 160 CNTGSIQCCDQVQDAK-SPQMSGIMSSLGIDPLGVTGLAGTSCSPIDILALGGGDSCTQMPVCCNNNTYQGLINIGCVPI 238
                  *************995.589***********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1735.72
//
Query:       CDO68555.1  [L=296]
Description: hypothetical protein BN946_scf184998.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-09   36.9   0.8    6.9e-09   36.2   0.8    1.2  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.8   3.9e-13   6.9e-09       1      54 [.     242     294 ..     242     295 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 3.9e-13
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvggg 54 
                  Cntg+vqCCn+v ++kd+ +  ++l+ +gl++++ltg vg +C++i+++g++g+
   CDO68555.1 242 CNTGPVQCCNQVVDSKDE-SQWDMLKGMGLKVDQLTGFVGADCTAISALGIAGN 294
                  *************99885.56678999********************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2097.31
//
Query:       CDO68556.1  [L=111]
Description: hypothetical protein BN946_scf184998.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-17   64.5   8.1    1.3e-17   64.2   8.1    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   8.1   7.3e-22   1.3e-17       1      80 []      30     107 ..      30     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 7.3e-22
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C++g+++CCn+vq a++ + +++ll+ l++   d +++vg++C+pin+ +vgg+ sCtq pvCC++n+f+g i lgC+pi
   CDO68556.1  30 CSSGSMHCCNDVQPASS-DPISALLKSLEIRDIDSSSSVGVSCTPINTGSVGGNPSCTQMPVCCDGNQFSG-ITLGCSPI 107
                  9************9855.6899********999999***********9999******************88.89*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 784.48
//
Query:       CDO68557.1  [L=384]
Description: hypothetical protein BN946_scf184998.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.8e-112  374.2   0.3   5.1e-112  373.7   0.3    1.2  1  Septin       Septin
    1.4e-07   31.6   0.1    2.9e-06   27.3   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
    3.4e-07   30.3   0.0    7.1e-07   29.3   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    1.1e-06   28.3   0.5    0.00042   19.9   0.0    2.6  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00028   20.3   0.0    0.00053   19.4   0.0    1.5  1  AIG1         AIG1 family
    0.00044   20.4   0.0    0.00096   19.4   0.0    1.6  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    0.00091   19.7   0.4     0.0032   17.8   0.0    2.0  2  AAA_16       AAA ATPase domain
     0.0014   18.9   1.3     0.0062   16.8   0.1    2.5  2  AAA_22       AAA domain
     0.0018   18.8   0.2      0.013   16.0   0.0    2.2  2  ABC_tran     ABC transporter
     0.0025   17.6   0.2       0.15   11.8   0.1    2.5  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.008   15.7   0.1      0.015   14.8   0.1    1.3  1  AAA_7        P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.032   13.8   0.1    1.8  1  Ras          Ras family
      0.063   13.0   1.9      0.067   12.9   0.3    2.0  2  AAA_24       AAA domain
      0.064   13.2   0.0       0.12   12.3   0.0    1.4  1  NACHT        NACHT domain
      0.072   13.1   6.7        1.4    8.9   0.1    2.9  3  Dynamin_N    Dynamin family
      0.073   12.3   0.0       0.11   11.6   0.0    1.3  1  NB-ARC       NB-ARC domain
       0.11   12.1   0.6       0.28   10.7   0.0    1.9  2  AAA_25       AAA domain
       0.13   12.3   0.4       0.42   10.6   0.0    2.0  2  AAA_14       AAA domain
       0.15   11.8   0.0       0.27   11.0   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
       0.19   11.3   0.3        1.1    8.8   0.3    2.1  1  FeoB_N       Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.7   0.3  5.7e-115  5.1e-112       1     277 [.      27     303 ..      27     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 373.7 bits;  conditional E-value: 5.7e-115
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylr 98 
                 +g +ft+mvvGesglGkttlintlf+t+l + + ++++ + +  k +e++  k+++ee+++k +ltviDtpgfGd v+n++sw piv++id+q+e+y+r
  CDO68557.1  27 RGAHFTIMVVGESGLGKTTLINTLFSTELSPPKDYSKRFQkQLDKLTEVEIIKAELEEKQFKTKLTVIDTPGFGDYVNNRDSWAPIVDFIDDQHEAYMR 125
                 6899***************************99999888746677889*************************************************** PP

                 HCTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHH CS
      Septin  99 eesklkRkkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsek 197
                 +e++  Rk ++D RvHaclyfi+Ptgh lkpld+e+mk+l ++vnliPviaKaDtlt+++l +fK++ir+ ++++ i+iy+ p++e+d++   +e+++ 
  CDO68557.1 126 QEQQPMRKDKIDLRVHACLYFIRPTGHTLKPLDIEVMKRLGTRVNLIPVIAKADTLTQNDLFTFKQRIRQVIQAQGIRIYQ-PPIEADDE-VSAEHARI 222
                 *********************************************************************************.99998884.5599**** PP

                 HHHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXX CS
      Septin 198 lkeslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklke 277
                 l e++Pf+i+gs e +++ +g+ v+gRky WGv evene+h+dF kLr+ll++t++ dL+++tee++Ye+yR+ +++++k 
  CDO68557.1 223 LSEAMPFSIIGSMEDVTTpDGRVVKGRKYLWGVAEVENENHCDFRKLRSLLIRTYMLDLISTTEEIHYENYRQAQMETRKF 303
                 *****************99*********************************************************99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.2e-09   2.9e-06      94     162 ..      25     100 ..      12     103 .. 0.81
   2 ?    1.3   0.0      0.32   2.8e+02      45      75 ..     167     196 ..     157     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.2e-09
                  HHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT.......TEEEESS-SSS CS
  RsgA_GTPase  94 kellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae.......gglliDtPGfr 162
                  +++ ++ t+++vG+SG GK+tLin+l +++    ++ s++ ++     t+ve+++ +        + ++iDtPGf 
   CDO68557.1  25 AKRGAHFTIMVVGESGLGKTTLINTLFSTELSPPKDYSKRFQKQLDKLTEVEIIKAELeekqfktKLTVIDTPGFG 100
                  44555678899******************9999*********99999999999975533345554889******96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.32
                  TT-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelkeeleal 75 
                  ++++++ v+ K+D l++++ l ++k++++++
   CDO68557.1 167 TRVNLIPVIAKADTLTQND-LFTFKQRIRQV 196
                  56788889**********9.55555555543 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.9e-10   7.1e-07       2     101 ..      33     165 ..      32     178 .. 0.56

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.9e-10
                 EEEEESTTSSHHHHHHHHHT..........STEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGC................SSHHHHHH......HH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg..........ekaivsdkpgtTrdinegrvklkg..keielvDtpGl................iegaseek......gl 66 
                 +++vG +  GK+tLin+l+           ++ + +  + t  +i+++++++k+  ++++++DtpG+                i++++e         +
  CDO68557.1  33 IMVVGESGLGKTTLINTLFStelsppkdysKRFQKQLDKLTEVEIIKAELEEKQfkTKLTVIDTPGFgdyvnnrdswapivdfIDDQHEAYmrqeqqPM 131
                 89****************97545444433223333334444445555555544333789*******877777777777665543322222221000022 PP

                 HHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1  67 gkaflaleeadlillvvdaseeklkpldeeleell 101
                 +k+     ++++ l+ ++ + ++lkpld e+ + l
  CDO68557.1 132 RKDKI-DLRVHACLYFIRPTGHTLKPLDIEVMKRL 165
                 22222.33466666666645556888877776665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.6e-07   0.00042       3      89 ..      30     108 ..      29     116 .. 0.72
   2 !    6.0   0.1    0.0086       7.7     121     154 ..     167     223 ..     158     335 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.6e-07
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevir 89 
                 + +i+++g    GKtTL+ +L  +     k+ +k+  +++lD+l e       +++  ++le+++ k+++++iDtPG  d++++   
  CDO68557.1  30 HFTIMVVGESGLGKTTLINTLFSTELSPPKDYSKR-FQKQLDKLTE-------VEIIKAELEEKQFKTKLTVIDTPGFGDYVNNRDS 108
                 6789*****************96555544433333.2455666544.......5666666666677899*************99765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0086
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH......................H CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrk......................e 154
                  +v++i +i K+D l +++l   ++ ++q ++++                       
  CDO68557.1 167 TRVNLIPVIAKADTLtQNDLFTFKQRIRQVIQAQgiriyqppieaddevsaehariL 223
                 5788***********9999******99999977766666666655555544444440 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.9e-07   0.00053       2      67 ..      32     107 ..      31     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.9e-07
                 EEEEESSTTSSHHHHHHHHHTS--.........SS--TTTS---SS-EEEEE.EETTEEEEEEE--SCCCTTCCHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkka.........Fesklsaqsvtkkcqkksr.twdgkkinViDTPglfdlsvsad 67 
                 ti++vG +g Gk + +N++  ++          F+ +l + +  +  + + + ++ ++k+ ViDTPg  d  ++ d
  CDO68557.1  32 TIMVVGESGLGKTTLINTLFSTELsppkdyskrFQKQLDKLTEVEIIKAELEeKQFKTKLTVIDTPGFGDYVNNRD 107
                 89*****************998888888888889999877665556666555477889*********988776655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-06   0.00096       2      66 ..      33      99 ..      32     110 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
                EEEESSTTSSHHHHHHCHCT-CCC-E..EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SG CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsek..ekstigvdfltkevtkikgvendkkvkkvklniWDtaGq 66
                +++vG+sg GKt+l++ + + + s+   +++ ++ ++ + + ++i + e ++k+ k kl + Dt G 
  CDO68557.1 33 IMVVGESGLGKTTLINTLFSTELSPPkdYSKRFQKQLDKLTEVEIIKAELEEKQFKTKLTVIDTPGF 99
                89********************986511555555555443323344445555556688999999885 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.6e-06    0.0032      26      89 ..      32      85 ..      21     142 .. 0.74
   2 ?   -0.9   0.6         2   1.8e+03     117     117 ..     325     325 ..     174     375 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.6e-06
      AAA_16 26 lvllsGesGvGKsslvrellr.alekd.ggiflrgkcdqlesaipysalaqalareellrqlldea 89
                 ++++GesG GK++l+++l+  +l+   +    + ++++          ++ l++ e+++++l+e+
  CDO68557.1 32 TIMVVGESGLGKTTLINTLFStELSPPkD---YSKRFQK---------QLDKLTEVEIIKAELEEK 85
                689*************9999633333311...2222222.........356666666666666653 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
      AAA_16 117 s 117
                 +
  CDO68557.1 325 K 325
                 2 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   6.9e-06    0.0062       8      30 ..      33      55 ..      28     144 .. 0.68
   2 ?   -0.1   0.1       1.2     1e+03      58      89 ..     305     334 ..     254     364 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.9e-06
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                ++v+GesG GKTtl+++l+++  
  CDO68557.1 33 IMVVGESGLGKTTLINTLFSTEL 55
                79****************99864 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
      AAA_22  58 rellralglelkaerlsseellealeqalrar 89 
                 ++  r++++++ +   ++e+l+++++++++a 
  CDO68557.1 305 EQKPRKFENPKFK--EEEEALRKRFTEQVKAE 334
                 4444555666666..66666666666666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-05     0.013      13      42 ..      32      62 ..      25     140 .. 0.70
   2 ?    0.3   0.2       1.1   9.5e+02      25      83 ..     271     336 ..     270     373 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
                EEEEEESTTSSHHHHHHHHTT.SS--SEEEE CS
                xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllag.llkpteGei 42
                ++ +vGe+G GK+tL+++l   +l+p ++  
  CDO68557.1 32 TIMVVGESGLGKTTLINTLFStELSPPKDYS 62
                5789************988541555555544 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.1
                 HHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHH......HHHT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx......xxxx RF
    ABC_tran  25 StLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpelt.vren......esde 83 
                 S L+++ +  l  t +ei+++  ++ +++++++ +++ +  +++p++++e + +r++      ++++
  CDO68557.1 271 SLLIRTYMLDLISTTEEIHYEnYRQAQMETRKFGEQKPRK-FENPKFKEEEEaLRKRfteqvkAEEA 336
                 5566666666667777888873344444444444444433.34444444444133336444442222 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00017      0.15       4      28 ..      33      57 ..      31      70 .. 0.84
   2 ?    3.0   0.0     0.089        80      37      53 ..      90     108 ..      69     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
   PduV-EutP  4 illiGkvgsGKttLtqalkgeelkY 28
                i+++G++g GKttL ++l   el+ 
  CDO68557.1 33 IMVVGESGLGKTTLINTLFSTELSP 57
                9****************99998875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.089
   PduV-EutP  37 sdeviDtPG..eylenrkl 53 
                 + +viDtPG  +y++nr  
  CDO68557.1  90 KLTVIDTPGfgDYVNNRDS 108
                 4568****5449**99975 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.6e-05     0.015      33      90 ..      30      86 ..      20      95 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
       AAA_7 33 kkpvllvGptGtGKtviikd.llkkld.kekylsltinfsaqtsanqlqdiiesklekrr 90
                +  +++vG++G GKt++i++ + ++l+ +++y   +  f++q +  +  +ii+++le ++
  CDO68557.1 30 HFTIMVVGESGLGKTTLINTlFSTELSpPKDY---SKRFQKQLDKLTEVEIIKAELEEKQ 86
                5679****************777777723333...3456677777777777777776665 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.6e-05     0.032       2      65 ..      33     106 ..      32     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                 EEEEESTTSSHHHHHHHHHH..........SSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvk..........dkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslr 65 
                 +++vG+s+ GKt+l++   +          ++F+++ ++   v+  ++e+e ++ + kl++ DT G  ++ + r
  CDO68557.1  33 IMVVGESGLGKTTLINTLFStelsppkdysKRFQKQLDKLTEVEIIKAELEEKQFKTKLTVIDTPGFGDYVNNR 106
                 689************98654122222222257888888888889999999999999**********99887665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   7.4e-05     0.067       4      22 ..      32      50 ..      29     129 .. 0.81
   2 ?   -3.0   0.1       5.6     5e+03     114     140 ..     281     307 ..     274     333 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.4e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 i+++G+sg GKTtl+++l
  CDO68557.1 32 TIMVVGESGLGKTTLINTL 50
                699**************99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.6
      AAA_24 114 llkklqelrknvifiahektrkdedpe 140
                 l+ + +e  +  +  a ++trk+++++
  CDO68557.1 281 LISTTEEIHYENYRQAQMETRKFGEQK 307
                 444444444444444555555555543 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.12       2      22 ..      32      52 ..      31      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                ++++ Ge+G GKTtL+  l +
  CDO68557.1 32 TIMVVGESGLGKTTLINTLFS 52
                689*************99865 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0016       1.4       1      25 [.      33      57 ..      33      60 .. 0.90
   2 ?    7.7   0.0    0.0037       3.3      73     119 ..      66     108 ..      53     131 .. 0.57
   3 ?   -1.9   0.7       3.4     3e+03      48      80 ..     320     353 ..     284     369 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
                EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp 25
                i+vvG+   GK++++n L   ++ p
  CDO68557.1 33 IMVVGESGLGKTTLINTLFSTELSP 57
                89****************9988766 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0037
                 HHHHHHHHTSSSS--SS-EEEEEE.ETTS-SEEEEE---B-S.SSGTTS CS
   Dynamin_N  73 eketekiagankgiskkvillkil.sllvkgltlvDlPGlds.vnkrdq 119
                 +k+ +k++    ++  ++i+ +   +  + +lt++D+PG+ + vn+rd 
  CDO68557.1  66 QKQLDKLT----EV--EIIKAELEeKQFKTKLTVIDTPGFGDyVNNRDS 108
                 44444444....22..233333330344789*********985666655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.4
                 CS...SSEEEE.T-EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N  48 eravkeelkek.ekkledfsevreeieketekia 80 
                 e+a ++++ e+ ++++  f + ++++ +e+++++
  CDO68557.1 320 EEALRKRFTEQvKAEEARFRQWEQHLIAERDRLN 353
                 2222333333345555555555555555555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.11      18      43 ..      29      53 ..      19     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                SCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 18 lqslvvalvGmgGvGKttlakqilnk 43
                   + + +vG  G+GKttl++  ++ 
  CDO68557.1 29 AH-FTIMVVGESGLGKTTLINTLFST 53
                44.8899*************999987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00032      0.28      11      50 ..       9      47 ..       2      55 .. 0.83
   2 ?   -2.2   0.3       2.9   2.6e+03      87      99 ..     335     352 ..     318     374 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
      AAA_25 11 svadlaapppprrwlvkgllpagelallaGapgtGKttla 50
                +  ++a+ p +r ++v     a+ +++++G +g GKttl 
  CDO68557.1  9 DGIGIANLPNQRHKIVAKR-GAHFTIMVVGESGLGKTTLI 47
                5566788888999999998.89****************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.9
      AAA_25  87 rrRlravgeal.....rd 99 
                 + R+r++ ++l     r+
  CDO68557.1 335 EARFRQWEQHLiaerdRL 352
                 345555555554332222 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00047      0.42       5      71 ..      33      95 ..      30     123 .. 0.64
   2 ?   -1.1   0.1         2   1.8e+03      48      48 ..     313     313 ..     271     377 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflD 71
                ++++G    GKTtl+++l++++l +++++    ++++ d kl++ e +  ++ ek +  k+++ ++D
  CDO68557.1 33 IMVVGESGLGKTTLINTLFSTELSPPKDYS-KRFQKQLD-KLTEVEIIKAELEEK-Q-FKTKLTVID 95
                678899999**************3333332.23333233.233232223333333.1.234555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
      AAA_14  48 d 48 
                 +
  CDO68557.1 313 N 313
                 1 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00031      0.27      23      42 ..      29      50 ..      18      65 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00031
      AAA_29 23 g..atlltGpsGsGKSTllDAi 42
                   +++++G+sG GK+Tl+  +
  CDO68557.1 29 AhfTIMVVGESGLGKTTLINTL 50
                2456899***********9654 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3    0.0012       1.1       2      24 ..      32      54 ..      31     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
                EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak 24
                t+++vG+   Gkttl+n+l  ++
  CDO68557.1 32 TIMVVGESGLGKTTLINTLFSTE 54
                799***************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1227  (0.0684366); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 2485.62
//
Query:       CDO68558.1  [L=826]
Description: hypothetical protein BN946_scf184998.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5477.71
//
Query:       CDO68559.1  [L=185]
Description: hypothetical protein BN946_scf184998.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.032   14.2   0.0       0.13   12.3   0.1    1.9  2  Frankia_peptide  Ribosomally synthesized peptide prototyped b


Domain annotation for each model (and alignments):
>> Frankia_peptide  Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.1e-06      0.13       1      17 [.      64      80 ..      64      85 .. 0.94
   2 ?   -1.9   0.0      0.19   3.4e+03       9      23 ..     103     117 ..      99     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-06
  Frankia_peptide  1 everlIgrAvtDeaFRq 17
                     ev+ +I r+ tD++FRq
       CDO68559.1 64 EVQEVITRLNTDPEFRQ 80
                     89**************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.19
  Frankia_peptide   9 AvtDeaFRqrLladp 23 
                      Av  ++F  r l++p
       CDO68559.1 103 AVQPNSFAHRILDSP 117
                      666788999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1357.14
//
Query:       CDO68560.1  [L=106]
Description: hypothetical protein BN946_scf184998.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       143  (0.0079759); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 841.30
//
Query:       CDO68561.1  [L=1159]
Description: hypothetical protein BN946_scf184998.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.45
# Mc/sec: 7685.22
//
Query:       CDO68562.1  [L=639]
Description: hypothetical protein BN946_scf184998.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-24   86.7   0.0    2.5e-24   85.6   0.0    1.5  1  HA2          Helicase associated domain (HA2)
    4.7e-22   78.1   0.0    2.9e-21   75.6   0.0    2.3  2  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    5.4e-07   29.5   0.3    3.2e-06   27.0   0.3    2.0  1  DEAD         DEAD/DEAH box helicase
    0.00039   20.1   0.2     0.0027   17.4   0.0    2.1  2  SRP54        SRP54-type protein, GTPase domain
     0.0013   19.0   0.4       0.32   11.3   0.0    2.9  4  AAA_22       AAA domain
     0.0047   17.3   0.0      0.015   15.6   0.0    1.8  1  AAA_19       AAA domain
  ------ inclusion threshold ------
      0.014   14.5   0.0      0.026   13.6   0.0    1.4  1  T2SSE        Type II/IV secretion system protein
      0.048   13.7   0.0        6.8    6.7   0.0    2.4  2  ResIII       Type III restriction enzyme, res subunit
       0.12   11.8   0.1        0.4   10.2   0.0    1.9  2  AAA_7        P-loop containing dynein motor region
       0.16   12.5   0.0       0.37   11.3   0.0    1.6  1  ABC_tran     ABC transporter
       0.17   11.3   0.1       0.67    9.4   0.0    1.9  2  PhoH         PhoH-like protein


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   1.5e-27   2.5e-24       1     108 []     354     442 ..     354     482 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.5e-27
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 AlelL +l ALd+eg+lT+lG+ ma++Pl+p++akmL+++   e++c +e++tivA+lsv ++ l++ +++ke ++               a++ l  +
  CDO68562.1 354 ALELLNYLAALDDEGQLTPLGSIMADFPLDPQMAKMLIVS--PEFNCSNEILTIVAMLSVPNVWLRPPSQRKEADQ---------------AKAMLTIP 435
                 89**************************************..566***********************87654443...............33333333 PP

         HA2 100 daegDhltl 108
                 d  gDhltl
  CDO68562.1 436 D--GDHLTL 442
                 3..666554 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.9   6.3e+03      48      61 ..     106     119 ..     101     127 .. 0.74
   2 !   75.6   0.0   1.8e-24   2.9e-21       1      83 []     503     580 ..     503     580 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.9
                  SSSEEEEEEEEESS CS
  OB_NTP_bind  48 epewvvytelvett 61 
                   p++v+y  l  t+
   CDO68562.1 106 IPQFVCYSDLPHTK 119
                  589****9987775 PP

  == domain 2  score: 75.6 bits;  conditional E-value: 1.8e-24
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagqi 83 
                  +r++l+ G+++q+a+k+ +k+ y t+++++ v++hps+ l        pewv+++e+v ttk+y+r+++ i p+wLl++a+++
   CDO68562.1 503 VRKALVCGFFMQVAHKEGEKNAYLTVKDNQVVSLHPSCGLD-----TSPEWVIFNEFVLTTKPYIRTVSEIKPEWLLEYAPNY 580
                  699*************99***********************.....6*********************************986 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3     2e-09   3.2e-06      13     174 ..      88     266 ..      78     268 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2e-09
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST....SEEEEEETT...................SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx...................xxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid....lrvlliigg...................vaar 88 
                 +++ +++ +eTGsGKT+   ip + + ++  +++g+ + +  P r  a  +++++   ++  +    +rv++ + g                   v ++
  CDO68562.1  88 TNQIIVMVGETGSGKTTQ--IPQFVCYSDLPHTKGKLVACTQPRRVAAMSVAKRVADEMDGERlffsVRVVVRVDGpglesavcvgaakvplgkqVGYS 184
                 566789**********97..66665555558999999******************99999433344444444444322222222222222222223333 PP

                 HHHHHHHTT...CSEEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHH CS
                 xxxxxxxxx...xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD  89 dqlskldng...vdivvgtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvk 174
                    +++  +   + + ++t g+l++  +++ +  l++ ++++lDEa++       d +  +l+ +++  +d k    ++++SATl  ++ +
  CDO68562.1 185 IRFEDMT-EpgtTFLKYMTDGMLLReAMNDPE--LNRYSTIILDEAHERTLA--TDILMGLLKDIAKRRSDLK----LVIMSATLDaQKFQ 266
                 3333332.123466667777777773445555..*************98886..99999******88777776....********977665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.7e-06    0.0027       2      52 ..      90     141 ..      89     148 .. 0.78
   2 ?    0.0   0.1      0.35   5.6e+02      72     131 ..     207     266 ..     199     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.7e-06
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE.EESTSSTTHHHHHHHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllv.aaDtfRaaAveQLktla 52 
                 ++i++vG +G+GKTt + +   +    ++k  lv ++   R+aA+   k +a
  CDO68562.1  90 QIIVMVGETGSGKTTQIPQFVCYSDLPHTKGKLVaCTQPRRVAAMSVAKRVA 141
                 689*********************9997666555055667788886655555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.35
                 HHHHHHHHHHTTSSEEEEEE--SSTTHHH.HHHHHHHHHHHHSSSEEEEEEETTBHTHHHH CS
       SRP54  72 akeavekakeekidvvlvDTaGrlqndke.lmeelkkikkvvkpdevllvldattgqeavk 131
                 ++ea++  + +++ ++++D a      ++ lm  lk+i+k  ++d +l++++at+  ++++
  CDO68562.1 207 LREAMNDPELNRYSTIILDEAHERTLATDiLMGLLKDIAKR-RSDLKLVIMSATLDAQKFQ 266
                 567888888899999****9976665555055556666665.5888999999998877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0002      0.32       4      23 ..      88     107 ..      84     167 .. 0.91
   2 ?    4.6   0.0     0.023        37      78     128 ..     207     256 ..     169     265 .. 0.75
   3 ?   -2.6   0.0       3.6   5.9e+03      76     102 ..     316     345 ..     291     373 .. 0.48
   4 ?   -3.5   0.0       7.1   1.2e+04      72      89 ..     469     486 ..     445     497 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      AAA_22   4 tagilvvtGesGtGKTtllr 23 
                 t +i+v +Ge+G+GKTt + 
  CDO68562.1  88 TNQIIVMVGETGSGKTTQIP 107
                 789*************9775 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.023
      AAA_22  78 llealeqalraravielliiDEaqhlr..seealeeLrsllnlsrkgvqliLv 128
                 l+ea+++   +r+    +i+DEa+  +  ++ ++  L+++++ +r++++l+++
  CDO68562.1 207 LREAMNDPELNRYS--TIILDEAHERTlaTDILMGLLKDIAK-RRSDLKLVIM 256
                 44666666666666..8*******953334445555577777.7777777765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.6
      AAA_22  76 eellealeqalrarav...ielliiDEaqh 102
                 e l++ l++ + + a+   + l+  D ++ 
  CDO68562.1 316 EILRSNLANTVLELAKlgiHDLVHFDYVDA 345
                 444444444444444433334444444443 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 7.1
      AAA_22  72 rlsseellealeqalrar 89 
                  ++ e ++++l + ++++
  CDO68562.1 469 LQQAENVRSQLLRTMERY 486
                 344555555555555554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.2e-06     0.015       9     132 ..      88     251 ..      83     255 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.2e-06
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaa.lgae...................atTiHrlal.......... 77 
                 +++++++++  G+GKT+ + + v +    +  k + +++  + + Aa+ +++r+a  +++e                   a       +          
  CDO68562.1  88 TNQIIVMVGETGSGKTTQIPQFVCYSDLPH-TKGKLVACTQPRRVAAMSVAKRVADeMDGErlffsvrvvvrvdgpglesA-------Vcvgaakvplg 178
                 67899999***********99886654444.33333333444444555555555220222234334445556666666551.......04444456667 PP

      AAA_19  78 ......ldfddlltealelle.........eaeeekklqeee.llivDEfqdvd...elqyrLlkallgekkkl 132
                       + f+d ++   ++l+         ea ++ +l +++ ++i DE+ + +   +  + Llk +++++ +l
  CDO68562.1 179 kqvgysIRFEDMTEPGTTFLKymtdgmllrEAMNDPEL-NRYsTIILDEAHERTlatDILMGLLKDIAKRRSDL 251
                 77777755555555555555555555555577778888.5555******9875432456678888888776555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.026     116     161 ..      77     123 ..      42     144 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttll..yallkeinksderiv 161
                 ++++++l+   +++++i++ G TgsGKtt +   ++ + +++++ ++v
  CDO68562.1  77 AQMDDFLKMF-STNQIIVMVGETGSGKTTQIpqFVCYSDLPHTKGKLV 123
                 7899999998.899999************9854555556666655555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.02        33      21      39 ..      72     104 ..      57     117 .. 0.71
   2 ?    6.7   0.0    0.0042       6.8     124     169 ..     210     260 ..     188     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.02
                 ................TTSEEEEEESTTSTHHH CS
      ResIII  21 s..............krdkrglikmaTGtGKTl 39 
                 +                ++ ++++ +TG+GKT 
  CDO68562.1  72 KlpvfaqmddflkmfSTNQIIVMVGETGSGKTT 104
                 5555555555555556777888999*******7 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0042
                 ...HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---SEEEEEESS- CS
      ResIII 124 eseellrdrfdviiiDEaHrlgakk.....swreilekfkeavllglTATp 169
                 + ++ + +r+  ii DEaH  + ++       + i++  ++ +l+ ++AT+
  CDO68562.1 210 AMNDPELNRYSTIILDEAHERTLATdilmgLLKDIAKRRSDLKLVIMSATL 260
                 45666778899********88875356666778888888999999999997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00025       0.4      29      60 ..      85     118 ..      77     148 .. 0.70
   2 ?   -3.0   0.0       2.7   4.3e+03      50      81 ..     237     268 ..     234     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
       AAA_7  29 llknkkpvllvGptGtGKtviikd..llkkldke 60 
                 +++ ++ +++vG+tG+GKt+ i +  + + l+++
  CDO68562.1  85 MFSTNQIIVMVGETGSGKTTQIPQfvCYSDLPHT 118
                 5566777899**********99985444555554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
       AAA_7  50 ikdllkkldkekylsltinfsaqtsanqlqdi 81 
                 ++ llk + k++   + + +sa+ +a+++q+ 
  CDO68562.1 237 LMGLLKDIAKRRSDLKLVIMSATLDAQKFQKY 268
                 56688888889999999999999999999986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.37       8      28 ..      86     106 ..      80     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
                 EETTSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLl 28 
                 ++ ++++++vGe+G+GK+t +
  CDO68562.1  86 FSTNQIIVMVGETGSGKTTQI 106
                 57889**************76 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00041      0.67      11      33 ..      81     103 ..      75     109 .. 0.89
   2 ?   -2.9   0.0       2.3   3.8e+03     121     132 ..     220     231 ..     218     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
                 HHHHHHHH-SEEEEE--TTSSTT CS
        PhoH  11 eylealkkndivfaiGpaGtGKt 33 
                 ++l++ ++n+i++++G++G+GKt
  CDO68562.1  81 DFLKMFSTNQIIVMVGETGSGKT 103
                 5789999***************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 EEEEE-SGGG-- CS
        PhoH 121 afvilDEAQntt 132
                 + +ilDEA + t
  CDO68562.1 220 STIILDEAHERT 231
                 679*****8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4404.63
//
Query:       CDO68563.1  [L=289]
Description: hypothetical protein BN946_scf184998.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-20   71.4   0.1      6e-19   68.3   0.1    2.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1   3.3e-23     6e-19       2     190 .]      67     258 ..      66     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 3.3e-23
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSE...EEE.ETTEEEEEEESHHHHHHHHHHHHH.HHHHHHHHHSSGTCHHHHHHHHHHHHHHH CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKi...fki.ddhigvafaGlaaDartlvrrara.eaqlyrlrygrpipverlvarvaaklqay 95 
                  +Gt+v+Gi +kdgv+laad+   +   l+++  ++     +      ++++++G+ +D++++   + +   +++  + g+++ +  + ++v++ +  y
  CDO68563.1  67 VTGTSVLGIMFKDGVMLAADNLGASPPLLHTPP-ITNApppSPXtASSTVLGASGDMSDFQAVQALLDElTTDEFTHQDGHELGPAEVHEYVSRVM--Y 162
                 58******************8777556665554.5554111344367899***********99888765355677777888888884444443333..3 PP

                 HHHCTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH...STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome  96 tqrsgrrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey...kedltleeavelavkalkealerdklsgknievavi 190
                   rs++ p+  sl+++g+  +g+ +L ++d  G+ ++  + +a+G+g++ a+++l++ +   ++ lt+e a  l+ ++++ +++rd+ s ++++va++
  CDO68563.1 163 ARRSKMDPLWNSLVVGGFR-DGKRFLGYVDLLGTTYSA-PSIATGYGAYIAIPLLRAAVdgkEDTLTEEAARGLVHECMRVLFYRDARSLDKYQVATV 258
                 4466677777777777777.9999**************.6*********************7778******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2223.56
//
Query:       CDO68564.1  [L=131]
Description: hypothetical protein BN946_scf184998.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1051.03
//
Query:       CDO68565.1  [L=1029]
Description: hypothetical protein BN946_scf184998.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-80  268.6   0.1    7.2e-80  268.1   0.1    1.2  1  RVT_2         Reverse transcriptase (RNA-dependent DNA polyme
    6.4e-07   29.2   0.1    2.8e-06   27.2   0.0    2.1  2  DUF4939       Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
        1.1    9.3   5.4        3.1    7.9   5.4    1.8  1  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1   0.1   1.2e-83   7.2e-80       1     241 [.     545     785 ..     545     786 .. 0.95

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 1.2e-83
       RVT_2   1 ktyrlvslPkdrkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 kt+ lv  Pkdr+ +++rWv+ +k+    +++ykarlva+Gf+q+ gedy+e+f+Pv+r++s+r lla aa e++ +  +dv++afLn++l+ee+y+ q
  CDO68565.1 545 KTWVLVPRPKDRQVVANRWVYDIKH----DGRYKARLVAKGFTQVWGEDYHETFSPVARFESIRYLLAHAALEDWDIESMDVKTAFLNGDLEEEIYMEQ 639
                 79**********************5....9********************************************************************* PP

       RVT_2 100 PpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyv..rgtgegklivalyvddlliagsdikiledvkkelakkfklkdl 196
                 P G ++ ++e++v+ L+k++yGlk a++ Wn ki+k L +lgf+r+ +  G+yv  r+ g+  +iv lyvddll+ g+d k ++++k  l+k++k+ dl
  CDO68565.1 640 PEGWVVRGKEDYVCLLKKAIYGLKPASRQWNLKIHKSLLDLGFTRTYSDAGVYVyrRQGGDKVMIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDL 738
                 ***************************************************99752444555599********************************** PP

       RVT_2 197 gkvskfLGieiaqea..ggiklsladyiakvvkkfeltdaktvatPl 241
                 g v++fLG+ i  +     i++ +++yi++v++ f+++d+k+  tPl
  CDO68565.1 739 GAVKRFLGLRISCDRtiHRIEIDQEEYIQSVIERFDMADCKPARTPL 785
                 **********9986511568889**********************97 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.6e-10   2.8e-06      17      84 ..     156     224 ..     140     240 .. 0.85
   2 ?   -3.4   0.0       1.4   8.6e+03      17      27 ..     263     273 ..     253     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.6e-10
     DUF4939  17 rqkrrwrnpipfpetfdG.dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyik 84 
                 +     r  +  p++fdG d  +l  f  q         +tf++d  kvt+ i+ l+G al w  py+ 
  CDO68565.1 156 PSSSSERHNVREPDQFDGsDPSKLRSFFTQLELVFKARPRTFDTDEKKVTYAISYLKGMALAWFEPYLL 224
                 556667788899*****95679**********99999******************************85 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
     DUF4939  17 rqkrrwrnpip 27 
                  ++ +wr+pi 
  CDO68565.1 263 MRRLKWRCPIT 273
                 46779****95 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.4   0.00051       3.1      94     141 ..     423     468 ..     390     529 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00051
                   XXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXX............X CS
  RNA_polI_A34  94 aepaas...vvpkpprpqpkgLkmRFkPfGsgdgppgtigssseesegeke 141
                   ++         p+ p+p+p++ + R++P+G ++gp  +i+ + + +e++++
    CDO68565.1 423 QP---PpepNHPAVPPPRPAHRRNRHQPVGGSNGP--SIARDRPRRENRQR 468
                   22...133489999*****************9744..45666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1029 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.40
# Mc/sec: 7626.95
//
Query:       CDO68566.1  [L=347]
Description: hypothetical protein BN946_scf184998.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2483.93
//
Query:       CDO68567.1  [L=257]
Description: hypothetical protein BN946_scf184998.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1851.05
//
Query:       CDO68568.1  [L=273]
Description: hypothetical protein BN946_scf184998.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-25   89.2   0.1    5.8e-25   87.8   0.0    1.7  2  DDE_3          DDE superfamily endonuclease
    1.7e-06   28.5   1.2    3.2e-06   27.7   0.4    1.9  2  HTH_32         Homeodomain-like domain
    4.3e-05   23.7   0.0    9.1e-05   22.6   0.0    1.5  1  HTH_Tnp_Tc3_2  Transposase
     0.0002   20.9   0.2     0.0006   19.4   0.2    1.8  1  HTH_33         Winged helix-turn helix
     0.0064   16.7   0.0      0.029   14.5   0.0    2.1  3  rve            Integrase core domain
  ------ inclusion threshold ------
       0.14   11.3   0.0        7.7    5.6   0.0    2.1  2  PLU-1          PLU-1-like protein


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   3.2e+03      16      40 ..      26      48 ..      19      79 .. 0.62
   2 !   87.8   0.0   1.9e-28   5.8e-25      39     140 ..     134     235 ..     120     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
       DDE_3 16 rrrawakkGkrerleeygrrgrvnl 40
                 r  + ++G   r  e  r gr  +
  CDO68568.1 26 LRALYDQTGAVTRTPE--RQGRKRI 48
                4555555555554333..3333223 PP

  == domain 2  score: 87.8 bits;  conditional E-value: 1.9e-28
       DDE_3  39 nligaldekgglafvtfeetlnaedfaeflerlle...talqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrell 134
                 +++ al+ +g++a+ +fe +l+ae+f  f+e +l+   +++q  + vl++DnasiH++e lrelve+   +++l+ylP+ySP+lNpiE+ +s++k++++
  CDO68568.1 134 SILPALSLDGIIALDVFETSLTAEKFTLFIEMVLDcmnPFPQR-NSVLVMDNASIHHAEGLRELVEA--RGMRLEYLPTYSPDLNPIEEAFSSIKAWIR 229
                 67889999999*******************9765511167776.***********************..****************************** PP

       DDE_3 135 krrsfk 140
                 ++r + 
  CDO68568.1 230 SNRDYA 235
                 *98775 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.4   1.1e-09   3.2e-06       3      73 .]      24      93 ..      22      93 .. 0.83
   2 ?   -2.8   0.0       3.3   9.9e+03      29      52 ..     110     131 ..      95     135 .. 0.62

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.1e-09
      HTH_32  3 srwlkRyneeGlegLkdr.prrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73
                +r ++ y+++G  ++ +  +r+gr+r l++     i   +++ p+ s+++l+++l+e + + vS st++r L
  CDO68568.1 24 RRLRALYDQTG--AVTRTpERQGRKRILNAMDISFIEGCIERMPDISLQELQEALREARDIYVSLSTIHRSL 93
                78888899998..4443323679*****************7789***********6666677********87 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
      HTH_32  29 lsdevrariiallreeprWsprql 52 
                  +de rar +  +  e  + p+ql
  CDO68568.1 110 RDDEARARYCMHI-AE-NYQPEQL 131
                 4667777766666.44.4666666 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     3e-08   9.1e-05       6      46 ..      59     100 ..      56     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3e-08
  HTH_Tnp_Tc3_2   6 rlvrkdPritlreLanelkee.GksvsreTirrrLrkaglkk 46 
                     ++++ P i+l+eL++ l e+  + vs +Ti r L++ g++ 
     CDO68568.1  59 GCIERMPDISLQELQEALREArDIYVSLSTIHRSLKRRGFSR 100
                    578999*********************************986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2     2e-07    0.0006       7      55 ..      69     117 ..      67     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2e-07
      HTH_33   7 larlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpeaqea 55 
                 l++l++ ++e  ++ +s s+++r Lkr Gfs  k    a ++d+ea+++
  CDO68568.1  69 LQELQEALREARDIYVSLSTIHRSLKRRGFSRVKLSCPARERDDEARAR 117
                 7899******************************************986 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.5   7.5e+03      99     116 ..      10      27 ..       5      30 .. 0.76
   2 ?   -2.6   0.0         2   5.9e+03      33      58 ..      98     123 ..      96     133 .. 0.66
   3 !   14.5   0.0   9.8e-06     0.029      47     111 ..     158     221 ..     148     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
         rve  99 pgrpqdnGkvErfhrtlk 116
                 +   q+ G++E++ r l+
  CDO68568.1  10 AKIRQYTGLAESTQRRLR 27 
                 555688899999999887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
         rve  33 fsrlilaealsdemdastvlallera 58 
                 fsr+ l ++ + ++d + +  +++ a
  CDO68568.1  98 FSRVKLSCPARERDDEARARYCMHIA 123
                 77888888877776666666666544 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 9.8e-06
         rve  47 dastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErf 111
                 + ++ ++++   +  f ++   ++++Dn+s   ++ +re+++  g+r+++ + ++p+ n + E f
  CDO68568.1 158 KFTLFIEMVLDCMNPFPQR-NSVLVMDNASIHHAEGLRELVEARGMRLEYLPTYSPDLNPIEEAF 221
                 6667778888888889998.799*******99999************************986665 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0026       7.7     225     254 ..      60      89 ..      11      97 .. 0.84
   2 ?    3.7   0.0    0.0095        28     296     323 ..     203     230 ..     177     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0026
       PLU-1 225 lLeareklsleeLeallneaqeipvslpsl 254
                 ++e  + +sl+eL++ l+ea++i vsl ++
  CDO68568.1  60 CIERMPDISLQELQEALREARDIYVSLSTI 89 
                 677788888888888888888888887765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0095
       PLU-1 296 kgeslpvkleeleqLekelkraedWlek 323
                 ++e lp ++++l+ +e++ ++ ++W+++
  CDO68568.1 203 RLEYLPTYSPDLNPIEEAFSSIKAWIRS 230
                 4567999******************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 1520.47
//
Query:       CDO68569.1  [L=582]
Description: hypothetical protein BN946_scf184998.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0062   16.8   2.5      0.015   15.5   2.5    1.7  1  AP3D1     AP-3 complex subunit delta-1


Domain annotation for each model (and alignments):
>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.5   8.5e-07     0.015      86     119 ..     247     280 ..     237     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.5e-07
       AP3D1  86 kkkkkkkkkkkkkkkkkkkkkkeeesseseeddk 119
                 +k++kkk+k kkkkk++++k+++  +s++eed++
  CDO68569.1 247 DKQAKKKGKTKKKKKQNSRKRARGMDSDEEEDEN 280
                 4455555555555555566666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1472  (0.0821016); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 3382.70
//
Query:       CDO68570.1  [L=265]
Description: hypothetical protein BN946_scf184996.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00063   19.5   1.7     0.0016   18.3   1.7    1.6  1  zf-CCHC_6  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.7   8.7e-08    0.0016       3      21 ..     150     168 ..     149     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.7e-08
   zf-CCHC_6   3 KCknCGAFGHtarSkrCPm 21 
                 +C+ C  +GHt rSk CP 
  CDO68570.1 150 RCGVCSQLGHTKRSKNCPR 168
                 8*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1812.59
//
Query:       CDO68571.1  [L=293]
Description: hypothetical protein BN946_scf184996.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2103.57
//
Query:       CDO68572.1  [L=188]
Description: hypothetical protein BN946_scf184996.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1240.39
//
Query:       CDO68573.1  [L=145]
Description: hypothetical protein BN946_scf184996.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1049.64
//
Query:       CDO68574.1  [L=106]
Description: hypothetical protein BN946_scf184996.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 780.14
//
Query:       CDO68575.1  [L=352]
Description: hypothetical protein BN946_scf184996.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2578.60
//
Query:       CDO68576.1  [L=695]
Description: hypothetical protein BN946_scf184996.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 4454.73
//
Query:       CDO68577.1  [L=237]
Description: hypothetical protein BN946_scf184996.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.079   13.1  12.4       0.52   10.4   7.2    2.1  2  RP-C_C      Replication protein C C-terminal region
        0.1   12.4   8.3       0.22   11.3   8.3    1.5  1  Coilin_N    Coilin N-terminus
       0.44   11.3   5.7       0.35   11.6   1.7    2.0  2  MRNIP       MRN-interacting protein
        1.2    7.8   6.2        1.2    7.8   6.2    1.2  1  Presenilin  Presenilin
        3.9    8.2  19.2       0.56   10.9   2.8    2.7  2  GRP         Glycine rich protein family
          7    4.8  12.6        8.1    4.6  12.6    1.2  1  CDC45       CDC45-like protein


Domain annotation for each model (and alignments):
>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.2   0.00017      0.52      20      94 ..      11      85 ..       7     114 .. 0.64
   2 ?    5.9   0.2    0.0041        12      15      55 ..     142     184 ..     130     223 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
      RP-C_C 20 atlaeleelleelealreevenalesalkaenssanesqnerhiqnsnpdsssesepasekereekeaaaasaea 94
                +  ++l+++l+e e+lr++ve+  ++++ +e+++ ++ + e++ +  ++  + e+ ++ +kere++e+++++a++
  CDO68577.1 11 TPRERLNRMLREAEELRATVERDERERAAREKAEREQREREAREKAEQERLAKEKAENERKEREAAESQKRPAGE 85
                56789*****************99777777775555544444443333322223223333333333333333333 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0041
      RP-C_C  15 rlprk..atlaeleelleelealreevenalesalkaenssan 55 
                  l+r+   t++el+++ +el +lre +e +l++ ++++ +   
  CDO68577.1 142 GLRRSydRTSEELKSARKELRTLRESAEVLLKEVEWRKAQVEA 184
                 4444311567899999999999999999999777776655544 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.3   7.5e-05      0.22      65     128 ..      18      80 ..      12      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.5e-05
    Coilin_N  65 rvlrdndcirVklegsetkleaqesededsresasksasttkqkkkkKrekkqeeqdeqkasqa 128
                 r lr+++ +r+ +e +e++  a e+ ++++re ++++++++++  k+K e+ +++++e ++sq+
  CDO68577.1  18 RMLREAEELRATVERDERERAAREKAEREQREREAREKAEQERLAKEKAEN-ERKEREAAESQK 80 
                 679*********************************999999999999999.444455554443 PP

>> MRNIP  MRN-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   0.00012      0.35      40      95 ..      22      77 ..      16     117 .. 0.74
   2 ?    1.5   0.1      0.17   4.9e+02      30      92 ..     141     202 ..     135     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
       MRNIP 40 sgkdcrqlVqklnlkkgekeeeedeelkekkqeeeekeeseeeeklkedkenksee 95
                +++++r  V++   ++  +e++e+e+ +++++e+ e+e   +e++++e+ke +  e
  CDO68577.1 22 EAEELRATVERDERERAAREKAEREQREREAREKAEQERLAKEKAENERKEREAAE 77
                57788888888888888888877766666666666666666665555555555554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.17
       MRNIP  30 qslkkvygsgsgkdcrqlVqklnlkkgekeeeedeelkekkqeeeekeeseeeeklkedkenk 92 
                 q l++ y + +++++++  ++l  +++++e   +e + +k+q e   e  eee+++++d+e +
  CDO68577.1 141 QGLRRSYDR-TSEELKSARKELRTLRESAEVLLKEVEWRKAQVEAYVEYLEEEAAVENDEEYE 202
                 667777755.46788888899999999998888877788888888888888888877777665 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.2    0.0004       1.2     248     294 ..      30      76 ..       2     202 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0004
  Presenilin 248 asesskeeeseeesseksaqsseseeeseeesseaessaeesseeke 294
                  +++++e++++e++++++++++++e+ ++e+ +++++++e++++e++
  CDO68577.1  30 VERDERERAAREKAEREQREREAREKAEQERLAKEKAENERKEREAA 76 
                 11111111111111111111111111111111111111111111111 PP

>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   8.6     0.084   2.5e+02      25      71 ..      63     106 ..      23     126 .. 0.61
   2 ?   10.9   2.8   0.00019      0.56      31      84 ..     186     229 ..     157     236 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.084
         GRP  25 aaelskeeksekeeevkdekyggggkh...ggGgygggggggngGGGykg 71 
                 ++++++e k+ +++e ++      g+    g+ ++gg gg   +GGG+  
  CDO68577.1  63 KEKAENERKEREAAESQKRPA---GEAprdGRQAFGGPGG---EGGGRAA 106
                 122223333333333333333...3332224445544444...6677655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00019
         GRP  31 eeksekeeevkdekyggggkhggGgygggggggngGGGykgggGgyggggggge 84 
                  e  e+e+ v+++++          y+g   gg+ GGG++g++   +ggg g++
  CDO68577.1 186 VEYLEEEAAVENDEE----------YEGVEWGGERGGGQRGQRRRGRGGGLGKS 229
                 344455555555555..........44444444444444444333333333332 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  12.6    0.0027       8.1     122     196 ..      22     152 ..       3     203 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0027
       CDC45 122 ayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrrrse........................ 195
                 + e+l+              e d++e++  e+ e+e++e e  e+++++r +k+++e+e +++++ +s+kr   e                        
  CDO68577.1  22 EAEELRATV-----------ERDERERAAREKAEREQREREAREKAEQERLAKEKAENErKEREAAESQKRPAGEaprdgrqafggpggegggraavpg 109
                 122222222...........2222222222222233333333333333333333333332333333333333333455555566777777777777777 PP

       CDC45 196 ..........................................p 196
                                                           +
  CDO68577.1 110 ssreravwqaepgepgwltgeelmqtllvevqglrrsydrtsE 152
                 7777777777777777777777777777666666655554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2511  (0.140052); expected 358.6 (0.02)
Passed bias filter:                     1005  (0.0560544); expected 358.6 (0.02)
Passed Vit filter:                       228  (0.0127168); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 1495.42
//
Query:       CDO68578.1  [L=497]
Description: hypothetical protein BN946_scf184996.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-17   61.8   0.3    1.4e-16   60.3   0.3    1.8  1  Integrase_H2C2  Integrase zinc binding domain
    4.4e-15   55.9   0.0    8.7e-15   55.0   0.0    1.5  1  rve             Integrase core domain
    5.3e-07   29.7   0.1      1e-06   28.9   0.1    1.5  1  zf-H2C2         H2C2 zinc finger
    1.3e-05   25.0   0.2    2.5e-05   24.1   0.2    1.5  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.3   3.2e-20   1.4e-16       6      57 ..      60     113 ..      58     114 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 3.2e-20
  Integrase_H2C2   6 rkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                       ++l++ Hd+  agH G +kt +++ r y Wpg+r+ v++yvksC++C+r k+
      CDO68578.1  60 CLRVLRSRHDHptAGHWGQNKTQALVLRDYAWPGLRAYVRDYVKSCTQCARVKT 113
                     5689************************************************97 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.9e-18   8.7e-15       3     118 ..     130     243 ..     128     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.9e-18
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp   +++D+   ++  + gg   +lv+vd  ++ ++ +++ d  +as +++l  + v + +gv p  v+sD+gse++s+ fr + + l++r+ ft  +
  CDO68578.1 130 RPWNSISMDLIeQLP--SSGGYTAILVAVDRLTKQAIFIPTHDTLTASELADLFVMHVFSKHGV-PSHVTSDRGSEFVSHFFRSLGKALDMRLHFTSGY 225
                 677789999995555..77779******************************************.********************************** PP

         rve 101 rpqdnGkvErfhrtlkde 118
                 +p+  G  Er ++tl++ 
  CDO68578.1 226 HPEGDGQTERVNQTLEQY 243
                 ***************985 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   2.2e-10     1e-06       4      39 .]      74     109 ..      72     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.2e-10
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                  H G+nk+ al+ r Y w+g+ + v++ ++sC++C+
  CDO68578.1  74 GHWGQNKTQALVLRDYAWPGLRAYVRDYVKSCTQCA 109
                 6**********************************7 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   5.5e-09   2.5e-05       1      53 [.     429     484 ..     429     485 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.5e-09
                 EEEEEEEEEEEETTEEC..EEEEEEETTSTG..GGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgle..leYlVKWkglpy..sentWEpeenlekcfqelideFkk 53 
                 ye+ +I+d++ d+  ++  l YlV+W g+    +e +W  +++l++  qel+  F++
  CDO68578.1 429 YEISEILDSKLDRRWKTckLLYLVRWAGYEGtdEETSWILATELGHA-QELVLDFHR 484
                 78999*****999999999**********9984556*********88.****99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3120.72
//
Query:       CDO68579.1  [L=564]
Description: hypothetical protein BN946_scf184996.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   11.9   0.8       0.34   10.9   0.8    1.4  1  DUF2550   Protein of unknown function (DUF2550)


Domain annotation for each model (and alignments):
>> DUF2550  Protein of unknown function (DUF2550)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   1.9e-05      0.34      49     112 ..     397     459 ..     380     462 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
     DUF2550  49 geelewyrllslrprPsrvlsRrglevegrrepegeeaaalaedlvvvel..reegeelelamdee 112
                 +++l++++      +++++++ r+le+ +rre ++ee+  ++ +l   e+  re+ +++e+ m+ +
  CDO68579.1 397 EKALNYFQGQ---SESQVSWQQRKLELAERREKREEEQWQMQRQLQQREIcmRERAQAMEMIMSGD 459
                 5556665544...47899************************999877664477888899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3924.25
//
Query:       CDO68580.1  [L=801]
Description: hypothetical protein BN946_scf184996.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-58  198.3   0.1      6e-32  110.9   0.0    2.3  2  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    6.9e-37  125.9   0.0    1.3e-36  125.1   0.0    1.5  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
    5.3e-33  113.0   0.0    1.2e-32  111.9   0.0    1.5  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
     0.0035   17.0   0.0        1.6    8.3   0.0    2.3  2  RVT_2        Reverse transcriptase (RNA-dependent DNA polymer
     0.0085   15.9   2.7        2.7    7.9   0.2    2.4  2  DUF503       Protein of unknown function (DUF503)
  ------ inclusion threshold ------
      0.051   13.2   0.3        8.6    6.0   0.0    2.3  2  DDE_Tnp_4    DDE superfamily endonuclease
       0.09   13.3   0.0         10    6.7   0.0    2.5  2  DUF1474      Protein of unknown function (DUF1474)


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   1.8e-27   4.5e-24      14     195 ..     213     343 ..     205     346 .. 0.95
   2 !  110.9   0.0   2.4e-35     6e-32       1     222 []     436     596 ..     436     596 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 1.8e-27
                 ....-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.............. CS
       RVT_1  14 llsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstr 112
                 +l+vdy+ lnk++ k         + +++p   +              l+  +ka++++k+Dl+ a++ v+ +  ++ +taf+++              
  CDO68580.1 213 CLCVDYRGLNKITRK---------DRYPLPLVSDL-------------LDTPRKARIYTKIDLRHAYNLVRIAPGDEWKTAFRTR-------------- 275
                 5678***********.........***********.............889**********************************.............. PP

                 ...........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS
       RVT_1 113 sfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195
                            +g++e+ ++p+G+ ++P+ f++f+ne++ +l      v +++Y DDili+s+s ee+ +++++v ++l++ +
  CDO68580.1 276 -----------YGSFEWLVMPFGLSNAPAAFQRFVNEVFADLLD----VCVVVYLDDILIYSNSLEEHRQHVKEVLRRLRKFK 343
                 ...........9*******************************8....9******************************9975 PP

  == domain 2  score: 110.9 bits;  conditional E-value: 2.4e-35
                 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS
       RVT_1   1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 
                 ++Kk+ gs R+ +     dy+ lnk++ k         + +++p   +              l+  +ka++++k+Dl+ a++ ++ +  ++ +taf+++
  CDO68580.1 436 VKKKD-GSLRLcV-----DYRGLNKITRK---------DRYPLPLVSDL-------------LDTPRKARIYTKIDLRHAYNLIRIAPGDEWKTAFRTR 506
                 68***.*****55.....***********.........***********.............889********************************** PP

                 .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT-- CS
       RVT_1  99 tklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglk 197
                                          +g++e+ ++p+G+ ++P+ f++f+ne++ +l      v +++Y DDili+s+s ee+ +++++v ++l++ +l 
  CDO68580.1 507 -------------------------YGSFEWLVMPFGLSNAPAAFQRFVNEVFADLLD----VCVVVYLDDILISSNSLEEHRQHVKEVLRRLRKFKLY 576
                 .........................9*******************************8....9************************************ PP

                 BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 198 inpeKtklvlftvkseevkyLGvtl 222
                   ++K+++      +++v+yLG++l
  CDO68580.1 577 ARADKCEFH-----ATSVEYLGYIL 596
                 *********.....9*******975 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   5.1e-40   1.3e-36       2     105 .]     665     770 ..     664     770 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 5.1e-40
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHH CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarW 98 
                 p++++++etDAsd++i+++Ls + e+ge +p+af Sr+lsgae ny+t++kellAi +++k++rhyl+g    + v+t hknl+y+ ++k l++r+arW
  CDO68580.1 665 PDRQITVETDASDYAIAGILSTTMESGELHPVAFHSRTLSGAELNYDTHDKELLAIFECFKTWRHYLEGsGTpIDVVTNHKNLEYFSTTKLLTRRQARW 763
                 8999*****************************************************************7446************************** PP

                 HHHC-XX CS
   RT_RNaseH  99 aleLsey 105
                 +++Ls++
  CDO68580.1 764 SEFLSQF 770
                 *****98 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   4.6e-36   1.2e-32       2      96 ..     640     734 ..     639     739 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 4.6e-36
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgr 96 
                  ++ ++++f++lk+altsap+L+h +pd+++++etDaSd++i+++Ls + + g+++p+af Sr+ls ae ny+t++kellAi++++k++rhyl+g+
   CDO68580.1 640 DQRCRDSFNALKKALTSAPILHHWEPDRQITVETDASDYAIAGILSTTMESGELHPVAFHSRTLSGAELNYDTHDKELLAIFECFKTWRHYLEGS 734
                  688******************************************************************************************96 PP

>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0027       6.9     161     204 ..     309     354 ..     284     364 .. 0.80
   2 !    8.3   0.0   0.00062       1.6     161     200 ..     540     580 ..     515     591 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0027
       RVT_2 161 livalyvddlliagsdikil.edvkkelakkfklkdlg.kvskfLG 204
                 + v +y dd+li +++ ++  ++vk+ l +  k+k        fLG
  CDO68580.1 309 VCVVVYLDDILIYSNSLEEHrQHVKEVLRRLRKFKXXXxXXXSFLG 354
                 7899**********99887526799999987777765413456676 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00062
       RVT_2 161 livalyvddlliagsdikil.edvkkelakkfklkdlgkvs 200
                 + v +y dd+li++++ ++  ++vk+ l +  k+k +++++
  CDO68580.1 540 VCVVVYLDDILISSNSLEEHrQHVKEVLRRLRKFKLYARAD 580
                 7899***********99875267999999877777776665 PP

>> DUF503  Protein of unknown function (DUF503)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0012         3      11      32 ..     320     341 ..     311     344 .. 0.86
   2 !    7.9   0.2    0.0011       2.7      11      34 ..     551     573 ..     542     578 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
      DUF503  11 pdvrSLKeKRsvvkslieklrn 32 
                  +++SL e+R+ vk ++ +lr+
  CDO68580.1 320 IYSNSLEEHRQHVKEVLRRLRK 341
                 4789****************98 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
      DUF503  11 pdvrSLKeKRsvvkslieklrnrf 34 
                   ++SL e+R+ vk ++ +lr+ f
  CDO68580.1 551 ISSNSLEEHRQHVKEVLRRLRK-F 573
                 4789****************98.5 PP

>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0077        20     109     133 ..     321     344 ..     316     357 .. 0.89
   2 ?    6.0   0.0    0.0033       8.6     110     136 ..     553     578 ..     548     595 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0077
   DDE_Tnp_4 109 fnraiasarihvErvigrlkgrfri 133
                 +++++ + r+hv+ v++rl+ +f+ 
  CDO68580.1 321 YSNSLEEHRQHVKEVLRRLR-KFKX 344
                 788999**************.9985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0033
   DDE_Tnp_4 110 nraiasarihvErvigrlkgrfrilrs 136
                 ++++ + r+hv+ v++rl+ +f+ + +
  CDO68580.1 553 SNSLEEHRQHVKEVLRRLR-KFKLYAR 578
                 678999*************.**99854 PP

>> DUF1474  Protein of unknown function (DUF1474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0039        10      23      68 ..     292     339 ..     286     347 .. 0.84
   2 ?    3.7   0.0     0.035        90      23      69 ..     523     571 ..     517     584 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0039
     DUF1474  23 vstfswfidevftt..dsgrlkskeevlkyGykynehriyieqlidll 68 
                  ++f  f++evf+   d       +++l y    +ehr+++++ +  l
  CDO68580.1 292 PAAFQRFVNEVFADllDVCVVVYLDDILIYSNSLEEHRQHVKEVLRRL 339
                 567899999*9985458899999******************9987766 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.035
     DUF1474  23 vstfswfidevftt..dsgrlkskeevlkyGykynehriyieqlidlly 69 
                  ++f  f++evf+   d       +++l      +ehr+++++ +  l 
  CDO68580.1 523 PAAFQRFVNEVFADllDVCVVVYLDDILISSNSLEEHRQHVKEVLRRLR 571
                 567889999999854488999999*****************99877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5193.01
//
Query:       CDO68581.1  [L=478]
Description: hypothetical protein BN946_scf184996.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-10   40.9   0.0    3.7e-10   39.9   0.0    1.5  1  Retrotrans_gag  Retrotransposon gag protein
    5.8e-09   35.8   0.0      1e-08   35.0   0.0    1.4  1  DUF4939         Domain of unknown function (DUF4939)


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   4.2e-14   3.7e-10       3      94 ..     207     302 ..     205     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 4.2e-14
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekfl 91 
                     a + l+g A++w++++  +++         s++ ++++++ +f p +++ q+e++l +lr  +++ ++ Y+ +f++la+q++  +  + +  +f+
      CDO68581.1 207 AISYLKGMALAWFEPYLLERDSGnplefLYSYAVFQEELRVNFGPYDVTGQAEHDLENLRMaDNQRIANYIPQFNRLATQVR--WGRAGLRYQFY 299
                     6789***********9999988889**99*****************************************************..*********** PP

  Retrotrans_gag  92 aGL 94 
                     +GL
      CDO68581.1 300 KGL 302
                     **9 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.1e-12     1e-08      12     106 ..     150     251 ..     139     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.1e-12
     DUF4939  12 alprl.rqkrrwrnpipfpetfdG.dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi.kkds....pllndyraflaemkrv 103
                 a p   +     r  +  p++fdG d  +l  f  q         +tf++d  kvt+ i+ l+G al w  py+ ++ds     +l  y  f +e++  
  CDO68581.1 150 AAPSGtPSSSSERHNVREPDQFDGsDPSKLRSFFTQLELVFKARPRTFDTDEKKVTYAISYLKGMALAWFEPYLlERDSgnplEFLYSYAVFQEELRVN 248
                 555443566677888999*****95679**********99999******************************74667655334799***********9 PP

     DUF4939 104 fGw 106
                 fG 
  CDO68581.1 249 FGP 251
                 995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3430.59
//
Query:       CDO68582.1  [L=415]
Description: hypothetical protein BN946_scf184996.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-13   48.3   0.1    2.9e-12   46.7   0.0    1.9  2  Retrotrans_gag  Retrotransposon gag protein
      5e-09   36.0   0.0    9.1e-09   35.2   0.0    1.4  1  DUF4939         Domain of unknown function (DUF4939)


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.2e-16   2.9e-12       3      94 ..     165     260 ..     163     262 .. 0.96
   2 ?   -2.3   0.0      0.63   5.7e+03      68      81 ..     278     292 ..     268     300 .. 0.59

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.2e-16
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekfl 91 
                     a + l+g A++w++++  +++         s++ ++++++ +f p +++ q+e++l +lr  +++ +++Y+t+f++la+q++  +  +a+  +f+
      CDO68582.1 165 AISYLKGMALAWFEPYLLERDSGnppefLYSYAVFQEELRVNFGPYDVTGQAEHDLENLRMaDNQRIAKYITQFNRLATQVR--WGRAALRYQFY 257
                     6789***********9999888889**99*****************************************************..*********** PP

  Retrotrans_gag  92 aGL 94 
                     +GL
      CDO68582.1 258 KGL 260
                     **9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.63
  Retrotrans_gag  68 trfktladqlde.vl 81 
                     ++++ la+ ld+  +
      CDO68582.1 278 EELRNLAQSLDHrYW 292
                     345555555555444 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0     1e-12   9.1e-09      12     106 ..     108     209 ..      97     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1e-12
     DUF4939  12 alprl.rqkrrwrnpipfpetfdG.dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi.kkds....pllndyraflaemkrv 103
                 a p   +     r  +  p++fdG d  +l  f  q         +tf++d  kvt+ i+ l+G al w  py+ ++ds     +l  y  f +e++  
  CDO68582.1 108 AAPSGtPSSSSERHNVREPDQFDGsDPSKLRSFFTQLELVFKARPRTFDTDEKKVTYAISYLKGMALAWFEPYLlERDSgnppEFLYSYAVFQEELRVN 206
                 555443566677888999*****95679**********99999******************************7466764444599************9 PP

     DUF4939 104 fGw 106
                 fG 
  CDO68582.1 207 FGP 209
                 995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.51
# Mc/sec: 2457.04
//
Query:       CDO68583.1  [L=498]
Description: hypothetical protein BN946_scf184996.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-54  183.4   0.8    3.7e-54  183.4   0.8    3.0  4  Smg4_UPF3  Smg-4/UPF3 family
  ------ inclusion threshold ------
       0.14   11.3   0.1       0.22   10.6   0.1    1.2  1  DUF4121    Domain of unknown function (DUF4121)


Domain annotation for each model (and alignments):
>> Smg4_UPF3  Smg-4/UPF3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.1      0.37   3.3e+03     144     157 ..      11      22 ..       2      31 .. 0.35
   2 !  183.4   0.8   4.1e-58   3.7e-54       2     173 ..      35     197 ..      34     198 .. 0.92
   3 ?   -2.9   1.1      0.66   5.9e+03     140     157 ..     259     267 ..     242     296 .. 0.50
   4 ?   -2.8   0.6      0.61   5.4e+03     133     133 ..     404     404 ..     372     431 .. 0.48

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.37
   Smg4_UPF3 144 eeaeekekekeakk 157
                 ++ ++kekek  +k
  CDO68583.1  11 SKSKAKEKEK--EK 22 
                 1111111111..11 PP

  == domain 2  score: 183.4 bits;  conditional E-value: 4.1e-58
   Smg4_UPF3   2 ektKvviRrLPPnLteeefleavsdkplpetvdykyFvpGklskdslkeskysrayinfkdpedlvqfakkfdghvFvDskgnespaivefApyqkvpk 100
                 e+ K ++RrLPPnL+e+ f+++v +  ++etv++  +++Gk++++ +ke+++srayi fk++e l++f++++dghvF+D+ gnes+aivefAp+qkvp+
  CDO68583.1  35 ERLKTIVRRLPPNLPEDIFWQSVAKWVTEETVTWRVYYQGKFKTRLNKENIPSRAYIAFKNEEILATFSREYDGHVFRDKAGNESIAIVEFAPFQKVPN 133
                 689*********************999999********************************************************************* PP

   Smg4_UPF3 101 kkkkkkdakqgtIekDpeylaFleslekeeeekeseseeeklaeeaeekekekeakkekktttpLleylkekk 173
                 +k kk+d++ gtIekD++y++Flesl++++++++ +++ e+l  +         ++   +tttpLle lk++k
  CDO68583.1 134 EK-KKQDSRAGTIEKDEDYISFLESLKEASTKPSDADTLEALVAS--------MQPPPPPTTTPLLEALKAEK 197
                 88.************************777775555544443332........57899************998 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.66
   Smg4_UPF3 140 eklaeeaeekekekeakk 157
                 +k++ +         ak+
  CDO68583.1 259 KKDKAA---------AKA 267
                 111111.........111 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.61
   Smg4_UPF3 133 k 133
                 +
  CDO68583.1 404 P 404
                 1 PP

>> DUF4121  Domain of unknown function (DUF4121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.5e-05      0.22     157     212 ..      64     118 ..      58     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.5e-05
     DUF4121 157 ttrewrkyyiekqtdpeaegenlyrgeditlkseeelrqlvkdleGklfkgilsds 212
                 +t +wr yy  k + +  ++en+     i++k+ee l  +   ++G++f ++  ++
  CDO68583.1  64 ETVTWRVYYQGKFKTR-LNKENIPSRAYIAFKNEEILATFSREYDGHVFRDKAGNE 118
                 5789*99999996666.55588888888*********************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1365  (0.0761336); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 3200.65
//
Query:       CDO68584.1  [L=192]
Description: hypothetical protein BN946_scf184996.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1456.36
//
Query:       CDO68585.1  [L=537]
Description: hypothetical protein BN946_scf184996.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-90  302.7   0.1    3.5e-89  300.0   0.1    1.8  1  COesterase     Carboxylesterase family
    2.5e-12   47.1   1.6    7.6e-12   45.5   1.4    2.0  2  Abhydrolase_3  alpha/beta hydrolase fold
     0.0022   17.5   0.1     0.0042   16.6   0.1    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0051   16.5   0.8      0.014   15.1   0.8    1.5  1  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.094   11.6   0.1        1.1    8.1   0.1    1.9  2  Say1_Mug180    Steryl acetyl hydrolase


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.0   0.1   9.7e-93   3.5e-89      24     498 ..      39     506 ..      21     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 300.0 bits;  conditional E-value: 9.7e-93
                 EEEEEEEEESSB---GGGTTS--BE-.......---SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSSTTSSEEEEEEE--ST CS
  COesterase  24 evdaFlGiPYAepPvgelRFkkPepa.......epwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekkeakkklPVlVwihGgg 115
                 +  a+lGiPYAepP+ge+RF++P p        e+  +v+ A+ ++  C+q  +   +    +   +sEDCL Ln+y+P+ + +   +lPVlV+ihGgg
  CDO68585.1  39 NTVAYLGIPYAEPPLGERRFRAPLPLdtarvarESRGKVVAANVYPDFCIQGSTGAGEAGG-A---GSEDCLNLNIYAPAGA-KPGDRLPVLVYIHGGG 132
                 6679*******************874122222245567999**********9975555443.3...9************996.788888********** PP

                 TTS-BGCGS-THHHHHHH.TSEEEEE----HHHHH-B-....SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGT CS
  COesterase 116 fqtgsaseydgsaLaaeg.nvivVtinYRlGvlGFlst....gdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsr 209
                 +++g   +++ ++ + +  nv++V++ YRl  +GFl+     ++   + N+G++Dqv+AL+WV+++I++FGGdp++vt+ GesAG++sv+l+l+ + ++
  CDO68585.1 133 YVYGNPANWPFDHWIHQSpNVVIVSVYYRLDSFGFLAApelaDNTLGDLNAGFQDQVQALKWVQQHISAFGGDPSQVTINGESAGGSSVELHLVAHEAQ 231
                 ********88777666656******************977644456677************************************************** PP

                 TSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS..-CSSHH..HHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC CS
  COesterase 210 glfkraIlqSGsalspwaiqkkarkrakklakkvgc..kasssk..elveclrsksaeelldaqekaleasssklvsfaPvvdgdflpekPeellkseg 304
                 +lf +aI+qS +  +p  + +++r  ++  a+++gc  k +  +    v clr+ s+  l +aq  a+   +  + +f Pv+dg++l+  P el+ + +
  CDO68585.1 232 KLFSQAIAQS-VYRTPLPTPEQQRPLFDFYAAQAGCgsKSE--TvaARVACLRKASVGALARAQDAAMYNFTGAYNAFHPVIDGKLLTGLPTELILKGN 327
                 **********.7999*********************54444..345******************9988888888999********************77 PP

                 ..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHH CS
  COesterase 305 ..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklh 401
                   +vp+++G +++e+l  +++++++               lk+           l+ + ++ey+++  ++  ++ +++++ +++++ +++    + ++ 
  CDO68585.1 328 faDVPVIVGSTSNETLSSANNITSA---------------LKSF-------FPGLTTEDLQEYLEHYPESAFDSPTQRFIVATGESELICARAIIGQAA 404
                 *******************965555...............1111.......34555566677777888999*******************988888887 PP

                 HHTT-SEEEEEEE--STTSSST..TTGSSBTTTTHHHHTTGGGTSGCS.....S-HH.HHHHHHHHHHHHHHHHHHSSTTS...TTSS----B.TTTBE CS
  COesterase 402 asrgspvYlYsfdyrnssskkp..kwmgvvhgdeleyvfglpllekee.....ftke.deklsrkmmtywtnFaktgnPnk...eeeekWpkytkeeek 489
                  +r++++Y+Y++++       p      v h+ e  ++f       +       +   d+ ++++++ yw +F+++gnPn    ++++ Wp+yt e+++
  CDO68585.1 405 -ARKNKAYTYRYNQAV-----PtsGSNVVGHAAENWMMFRGTSTGFNGtttfqPQRPiDQAFAAELIAYWLSFVRSGNPNThklARSPTWPEYTLERKS 497
                 .99*********9988.....333556799*******997654433224457644457***********************99999*******877777 PP

                 EEEESSSSS CS
  COesterase 490 ylkinlkpk 498
                  + +++ ++
  CDO68585.1 498 RIVLQEGEN 506
                 766666554 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   1.4   2.1e-15   7.6e-12       1     110 [.     125     248 ..     125     328 .. 0.75
   2 ?   -3.2   0.0       1.8   6.3e+03     131     157 ..     359     384 ..     335     414 .. 0.60

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 2.1e-15
                    EEEE--STTTS--TTTT..HHHHHHHHHHHTSEEEEEE---.......TTTS......-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth..dalcrelakelgavvvsvdYrl.......APeh......pfPaavedalaalrwlaeqawelgadpsrivlaGdSaG 81 
                    lvy+HGGG+v g+++    d++++   +  ++v+vsv Yrl       APe        + a ++d ++al+w++++ +++g dps++++ G+SaG
     CDO68585.1 125 LVYIHGGGYVYGNPANWpfDHWIH---QSPNVVIVSVYYRLdsfgflaAPELadntlgDLNAGFQDQVQALKWVQQHISAFGGDPSQVTINGESAG 217
                    79***********96433666666...8999*********888888889*96333333699****************99***************** PP

                    HHHH..HHHHHHHHHTT---EEEEEEESE-S CS
  Abhydrolase_3  82 Gnla..aavalrardegepkvagqvliyPvt 110
                    G  +  + va++a++  + ++a+ v   P+ 
     CDO68585.1 218 GSSVelHLVAHEAQKLFSQAIAQSVYRTPLP 248
                    *754223344555555455577777777743 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.8
                    SSCHHHHHHHHHHHSSGGGGGSTTTSG CS
  Abhydrolase_3 131 lltraaldlfwrlylpeadrddplasp 157
                     lt+++l++++++y  e+ +d+p+   
     CDO68585.1 359 GLTTEDLQEYLEHYP-ESAFDSPTQRF 384
                    456666666666663.45555554333 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.2e-06    0.0042      43      95 ..     183     240 ..     176     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
                   HHHHHHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEEEE CS
  Peptidase_S9  43 nefdDfiaaaealakeg...yvdserlaitGgSyGGyltgaaln..qrpdlFkaavae 95 
                   + f+D+++a++++ ++      d++++ i G S+GG  +   l   ++++lF+ a+a+
    CDO68585.1 183 AGFQDQVQALKWVQQHIsafGGDPSQVTINGESAGGSSVELHLVahEAQKLFSQAIAQ 240
                   5799999999999555442278***************9987655448899**999998 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.8   3.8e-06     0.014       9     152 ..     107     246 ..     102     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-06
                 EEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSB...B.TTEEETTCCCCCCHCHHHHTHHHH CS
    Esterase   9 kvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlg...arfyenategpgaeayetfltqeLlp 104
                 ++++y P + +pg ++pv+++ +G  g+    +a   +++ +++   ++v+iv v +   s       +g   a+  ++ t g+ +  +++ +++  l 
  CDO68585.1 107 NLNIYAPAGAKPGDRLPVLVYIHG-GGYVYGNPANWPFDHWIHQS--PNVVIVSVYYRLDS-------FGflaAPELADNTLGDLNAGFQDQVQA--LK 193
                 789*********************.99999999998999888886..88888888888888.......5555677778999999******99987..89 PP

                 HHHHHCSEECCC...EEEEEETHHHHHH.HHHHHC.STTTCCEEEEES--S-C CS
    Esterase 105 lldanfrtapdg...ravaGqSmGGlgA.Lilalk.hpdrFgsvssfSpivnp 152
                 +++++ +         ++ G S GG++  L+l ++ + ++F++++++S +  p
  CDO68585.1 194 WVQQHISAFGGDpsqVTINGESAGGSSVeLHLVAHeAQKLFSQAIAQSVYRTP 246
                 999886654444455**********987698877769999********66444 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0003       1.1     114     135 ..     113     135 ..     103     145 .. 0.84
   2 ?    1.1   0.0     0.039   1.4e+02     196     213 ..     208     226 ..     182     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0003
  Say1_Mug180 114 petfdPkvD.pvllylHGGgfal 135
                  p   +P+   pvl+y+HGGg+++
   CDO68585.1 113 PAGAKPGDRlPVLVYIHGGGYVY 135
                  7777887668***********86 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.039
  Say1_Mug180 196 nvvvlGdSaGGnlv.Lsll 213
                  +v++ G+SaGG  v L l+
   CDO68585.1 208 QVTINGESAGGSSVeLHLV 226
                  799********98833333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3830.23
//
Query:       CDO68586.1  [L=309]
Description: hypothetical protein BN946_scf184996.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2169.60
//
Query:       CDO68587.1  [L=729]
Description: hypothetical protein BN946_scf184996.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-35  121.6   0.0    6.4e-35  120.7   0.0    1.5  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    8.9e-18   64.2   0.2    2.2e-17   63.0   0.1    1.8  2  HGTP_anticodon  Anticodon binding domain
    2.1e-16   59.7   0.0    4.1e-16   58.8   0.0    1.5  1  TGS             TGS domain
    4.8e-12   45.8   0.0    8.9e-12   44.9   0.0    1.5  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   1.4e-38   6.4e-35       5     178 ..     397     612 ..     389     613 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.4e-38
                   ETTSEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   5 drndreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefr 99 
                   d ++++ +LkP+n+++++ ++  +  rs k+LP+++++++ ++R+E+s ++ GL+Rvr F q+d +vf+ +++++d+++ l+  +++i+  +g+ef+
    CDO68587.1 397 DVEKEKWALKPMNCPGHCLIFDSR-DRSyKELPIRMAEFGIIHRNEASgALTGLTRVRRFVQDDTHVFCMPSQIEDEIAALFDFMQHIYGLFGFEFH 492
                   445799***************999.***777*****************9999*****************************************9976 PP

                   EEEEEGTTSC..................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTE........EEECTTS CS
                   xxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx RF
  tRNA-synt_2b 100 aiielmsaks..................................adykdkkefeavsesltkgieigtiqklgtrlserlga........tvldenn 154
                    ++++++ ++                                  a+y++k ++++ +  l+++ +++tiq + ++l+er+++         ++d  +
    CDO68587.1 493 -LELSTRPENylgtietwdaaedqlkkalekfypgkweinpgdgAFYGPKIDITIRDA-LRRAFQCATIQLD-FQLPERFNLkyrsadeaAAADAGK 586
                   .777788777899999999***********************************9999.*************.*********553222212222223 PP

                   SEEEEEEEEEE.EE.HHHHHHHHHHH CS
                   xxxxxxxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 155 reksvimicaa.ig.veRllsaileq 178
                      ++++i++a +g +eR++++i+e+
    CDO68587.1 587 PPARPVIIHRAiLGsLERFIAIITEH 612
                   34689*******9***********98 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.1   1.4e+04      15      28 ..      99     112 ..      95     119 .. 0.76
   2 !   63.0   0.1   4.9e-21   2.2e-17       1      92 [.     625     717 ..     625     719 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.1
                     HHHHHHHHHHHHTT CS
  HGTP_anticodon  15 eeyakklaeeLraa 28 
                     +++ak++a+ L + 
      CDO68587.1  99 MDVAKEIAQSLADR 112
                     68899999998765 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 4.9e-21
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEET....TTCEEEEEETTHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdr....dtreqervsldelvekl 91 
                     qv+v+p++     + eya+++a+ L++ g++v++d+ ++++ kkir+ + ++++f++vvG++el++++v+vr+r    ++ ++e+++ld ++ekl
      CDO68587.1 625 QVLVVPVAV---PYREYASEVADTLSKLGLYVDVDNGENTLPKKIRNGEIAQYNFILVVGQDELDTRSVNVRNRddvgTKARTETLPLDVIAEKL 716
                     89*******...79************************************************************777555577999999999988 PP

                     H CS
  HGTP_anticodon  92 k 92 
                      
      CDO68587.1 717 L 717
                     6 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   9.2e-20   4.1e-16       1      59 [.      79     138 ..      79     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 9.2e-20
                 EEEEETTSSEEEEETTB-.HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEE CS
         TGS   1 irvytPdGkvpdlprgat.veDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIv 59 
                 i+v++PdG++ + ++++t ++D+A+ I +sla+++++A+VnG++++l+++Le  + +e++
  CDO68587.1  79 ITVTLPDGSQRKGTSWETtPMDVAKEIAQSLADRVVIAKVNGELWDLERPLEGSCNLELL 138
                 68999***************************************************9986 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     2e-15   8.9e-12       2      44 .]     247     295 ..     246     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2e-15
                 EEEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   2 rvvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 +v+++G   v+lC G+H+p+Tg+I+af ++        ++++++ l+R+y
  CDO68587.1 247 TVYRCGP-MVDLCVGPHIPHTGKIKAFMVTknsasyfLGDANNDSLQRVY 295
                 8*****7.*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5023.94
//
Query:       CDO68588.1  [L=279]
Description: hypothetical protein BN946_scf184996.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-16   58.4   1.5    6.2e-16   58.4   1.5    2.0  2  MBOAT_2   Membrane bound O-acyl transferase family
  ------ inclusion threshold ------
       0.74   10.1   5.0       0.96    9.7   0.2    2.7  2  YiaAB     yiaA/B two helix domain


Domain annotation for each model (and alignments):
>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.17   1.5e+03      43      70 ..      87     116 ..      49     126 .. 0.67
   2 !   58.4   1.5     7e-20   6.2e-16       1      72 [.     171     245 ..     171     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.17
     MBOAT_2  43 g.sklarylqllvaF.llSGllHaagdytq 70 
                   + l+r +  ++aF +l +++H+ + ++ 
  CDO68588.1  87 IlQALRRAILNFLAFdALRAFIHTHLHLYL 116
                 224466677777777567777777766665 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 7e-20
     MBOAT_2   1 wpplfgslleayslrrfWgrfWHqlfrrglkstakkilrlllg..sk.larylqllvaFllSGllHaagdytqla 72 
                 w++l g+ +eay++rr+Wgr+WHql+rr ++ ++k  ++ l+    + l++ +q+ vaFllSGll ++gd++ ++
  CDO68588.1 171 WSDLLGPGSEAYTVRRLWGRVWHQLLRRHFAPLGKLAVQTLRIprGTwLSSQVQVHVAFLLSGLLYCLGDIMLGK 245
                 8999***************************999998887776542259999*******************9987 PP

>> YiaAB  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00011      0.96       6      28 ..     151     172 ..     140     173 .. 0.83
   2 ?    1.3   1.0     0.045   4.1e+02       4      19 ..     224     239 ..     222     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00011
       YiaAB   6 wlsfllalvlllvGlwylpldls 28 
                  l ++++++++++Glw  p d+s
  CDO68588.1 151 ALYLIVSMLAVATGLW-RPEDWS 172
                 5679************.776665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.045
       YiaAB   4 qswlsfllalvlllvG 19 
                 q+ ++fll+ +l+++G
  CDO68588.1 224 QVHVAFLLSGLLYCLG 239
                 7788899999888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2009.69
//
Query:       CDO68589.1  [L=338]
Description: hypothetical protein BN946_scf184996.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-20   72.6   7.6    5.9e-20   71.3   7.6    1.7  1  MBOAT_2   Membrane bound O-acyl transferase family


Domain annotation for each model (and alignments):
>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   7.6   3.3e-24   5.9e-20       1      82 [.     165     250 ..     165     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 3.3e-24
     MBOAT_2   1 wpplfgslleayslrrfWgrfWHqlfrrglkstakkilrlllg..sk.larylqllvaFllSGllHaagdytqlap.estallfFl 82 
                 wp++fgs++eay++rr+Wgr+WHq++rr +++ +k++++ll     + l++ +q+ vaF+lS llH++gd++ +++    + lfF+
  CDO68589.1 165 WPEYFGSWSEAYTVRRLWGRAWHQALRRHFSHWGKFVVQLLGVprGTwLSSQVQVHVAFALSSLLHCMGDLMLGKEhFGRSSLFFA 250
                 9***************************************998752269999***********************64444888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2399.33
//
Query:       CDO68590.1  [L=403]
Description: hypothetical protein BN946_scf184996.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-18   66.0   8.2    3.8e-18   65.5   5.8    2.4  2  MBOAT_2   Membrane bound O-acyl transferase family


Domain annotation for each model (and alignments):
>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.1   1.8e+03      57      74 ..      50      68 ..      44      81 .. 0.72
   2 !   65.5   5.8   2.1e-22   3.8e-18       1      82 [.     235     320 ..     235     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.1
     MBOAT_2 57 llSGllHaagdytqlap.e 74
                llS+   a++ yt+++p +
  CDO68590.1 50 LLSASAYACIAYTMGNPtD 68
                6788888999999998752 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 2.1e-22
     MBOAT_2   1 wpplfgslleayslrrfWgrfWHqlfrrglkstakkilrlllg..sk.larylqllvaFllSGllHaagdytqlap.estallfFl 82 
                 wp+lfg+++eay++r++Wgr+WHq +rr +++ +k  ++ l     + l++ +q+ +aF+lS+llH++gd++ +++    +++fF+
  CDO68590.1 235 WPDLFGPWSEAYTIRHLWGRAWHQGLRRHFSRWGKLAVEALGIprGTwLSSQVQVHTAFALSALLHCMGDLMLGKEhFGRSWVFFA 320
                 9**************************************9998752269999***********************64333777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3031.18
//
Query:       CDO68591.1  [L=484]
Description: hypothetical protein BN946_scf184996.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-86  288.6   0.0    2.7e-85  286.4   0.0    1.8  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
     0.0054   15.7   0.0     0.0089   15.0   0.0    1.2  1  Aminotran_5    Aminotransferase class-V
  ------ inclusion threshold ------
       0.01   15.1   0.0       0.02   14.1   0.0    1.4  1  Aminotran_1_2  Aminotransferase class I and II
      0.012   14.4   0.0      0.024   13.4   0.0    1.5  1  OKR_DC_1       Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.4   0.0     6e-89   2.7e-85      41     375 .]      59     397 ..      35     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 286.4 bits;  conditional E-value: 6e-89
                    TBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT..-EEEEE..SSHHHHHHHHHHHHHHHHHHHHHH CS
  Pyridoxal_deC  41 efhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeefleke..gggvlq..vgssestllallAartkvikemke 132
                     f kl+  + sl ++lgdl ++++ + gf+w +sPa+tele+vv+dw a+l+gl ++fl+ +  gggv+q  +++se+++++ +Aar++ ++e  +
     CDO68591.1  59 DFQKLIIPACSLEGILGDLYSSSVSNPGFNWLSSPACTELEQVVMDWCAKLIGLGDHFLNRNgiGGGVIQeqTTASEACIVVCVAARARYVRENPD 154
                    56677777888999**********************************************96699***963379****************998777 PP

                    HTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTB..B-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHH CS
  Pyridoxal_deC 133 kgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengk..lrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicek 226
                    ++        l+ lv+yt  q hs   ka+lvlg+++r++p++++++  lrg+al++a++ed+++G  pf+   t+Gtt++ga d+l+e+g+++++
     CDO68591.1 155 AK--------LEDLVIYTTTQTHSLGVKAGLVLGLEVRALPVKPEYEygLRGDALRQALKEDHARGKRPFVFIGTVGTTSSGAVDNLEEIGQVLKE 242
                    77........558*****************************997652279********************************************* PP

                    CT.-EEEEE-TTGGGGGGSGGGGG..GGTTGG.GESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TT..TTTSEECCCGSSSSSG CS
  Pyridoxal_deC 227 yd.lwlHvDAAyaGsaficpeirh..llkgie.radSitvnphKlllvlldcsalivkdkealqqalqleaeYLehed..sdvaadlgtkaiplsr 316
                    +  +wlHvD A+aG a+ cpe+r+  +l  i+ +a+S  +n hK++lv++d+s+l+vk + +l++al + +e+L+ ++   ++ +d++++ + l+r
     CDO68591.1 243 HPcIWLHVDSAWAGVAMACPEYREygKLDAINkYAESYGTNFHKWGLVNFDASMLWVKSRRNLTDALDVTPEFLRTKQhdAGLVVDYRNWHLGLGR 338
                    8636*******************99977777538****************************************98777899************** PP

                    HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEEES CS
  Pyridoxal_deC 317 rvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFrlk 375
                    r+r+lk+wfvlr +Gveg++++ir+ v l + +++l+r+  +fe+v+ + l+l +Frlk
     CDO68591.1 339 RFRSLKVWFVLRRYGVEGFRKHIREGVALNEHFASLVRASPDFELVTTPSLALSVFRLK 397
                    *********************************************************97 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-06    0.0089      85     179 ..     155     255 ..     141     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
                  -TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE..GGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHT.T-EEE CS
  Aminotran_5  85 lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld..ldelekll......nektklvaithvsnvtGtiqpveeigklakkk.galvl 173
                   k +d +++t++  h+  v   ++    g++v+ +p+++e e+    d+l+++l       +++ + + t   +++G ++ +eeig+++k++  ++++
   CDO68591.1 155 AKLEDLVIYTTTQTHSLGV---KAGLVLGLEVRALPVKPEYEYGlrGDALRQALkedharGKRPFVFIGTVGTTSSGAVDNLEEIGQVLKEHpCIWLH 249
                  5667899999999999994...455557**********99998844588899995555523344455556668899***************97899** PP

                  EE-TTT CS
  Aminotran_5 174 vDaaqa 179
                  vD+a a
   CDO68591.1 250 VDSAWA 255
                  **9965 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.5e-06      0.02     113     199 ..     179     263 ..     157     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-06
                    TTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-T.TT--B--HHHHHHHHHHHHHT.TEEEEEEETTTTCBSSSSH CS
  Aminotran_1_2 113 sggevvryplyseedfhldlealeealkeapegnkktkvilvesphN.PtGtvatleeleklldlakky.nlllfvDeaYagfvfgsld 199
                     g+ev+  p+++e +++l  +al +alke++++ k + ++++ ++    +G+v +lee+ ++    k++  ++l vD a ag ++  ++
     CDO68591.1 179 LGLEVRALPVKPEYEYGLRGDALRQALKEDHARGK-RPFVFIGTVGTtSSGAVDNLEEIGQV---LKEHpCIWLHVDSAWAGVAMACPE 263
                    58899999**********************99999.88888888875167888888888888...99999************9998444 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.4e-06     0.024     154     223 ..     199     271 ..     191     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.4e-06
                 HHHHHHHHH.STTTGS.ESEEEEESS-TTSEEE-HHHHHHHH.TTSESEEEEE-TT-TTGGGSGGGTTSSSSS CS
    OKR_DC_1 154 etlkekike.vpdaka.prlavitnsTYdGvlynakeivdkl.eklsdrilfDeAwvgyeqfiplyadaskll 223
                 + l++++ke ++  k  ++++    +T  G + n++ei + l e+ ++ +++D+Aw g +   p y +  kl 
  CDO68591.1 199 DALRQALKEdHARGKRpFVFIGTVGTTSSGAVDNLEEIGQVLkEHPCIWLHVDSAWAGVAMACPEYREYGKLD 271
                 67888887625566663444445556789*********99874799***********9888777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3790.69
//
Query:       CDO68592.1  [L=557]
Description: hypothetical protein BN946_scf184996.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   87.0  35.9    1.1e-24   87.0  35.9    1.9  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0  35.9   6.3e-29   1.1e-24      25     351 ..     113     459 ..     104     461 .. 0.77
   2 ?   -4.0   0.1      0.29   5.2e+03     161     170 ..     481     490 ..     476     510 .. 0.48

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 6.3e-29
       MFS_1  25 edlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergra 122
                 e++gi+      l+l+++++g++++ +p+  l   +G+ r+++l+l ++++++l +++a +++ llvlrvl G+g+++++++++++++ w++++e ++ 
  CDO68592.1 113 ENFGITNNNkWTLALSIFYVGYCILEMPANILQRYIGANRFFFLSLSWWGIASLSFVYAKGYPGLLVLRVLLGIGEAGYYAGMIYYLSFWYKRSELAMR 211
                 55665555423469999***************7779****************77777889999************************************ PP

       MFS_1 123 igllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee.............kgtgpaplvpawkall 204
                 i+l ++g+  Gai g l+ gl+ ++ +    W+ +f++  + ++ + +   ++lp  p + +  +p+e+              +  g  ++   +ka++
  CDO68592.1 212 ISLCMTGTLPGAIGGLLAFGLVRAHTSlltgWQFLFLASDPDLAHGRL-HPVVLPSFPFTASFLTPREKAiaqarlnrdhrpqSHGGMNGWEG-FKAVV 308
                 ******999888877776665555555666699888887666666633.33333333333333333333333333333445555555555555.***** PP

       MFS_1 205 kdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...... 297
                 +d   w+l+i+ ++f +g+++++++lp+ l  +lg+s  l++ +l  ++++vg ++ ++ ++ sdr   r r + ++l+++++++g+++la+       
  CDO68592.1 309 NDLNAWMLMIIYASFNVGVATISYFLPT-LINQLGFS-PLSSQGLTVAPYAVGWFMVFFQAWHSDR--TRDRGYHIMLSTAISCIGYIVLAALagkgts 403
                 ******99999999999***********.5*******.57777779999999999999********..566**********************887544 PP

       MFS_1 298 ssavllll....vlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggal 351
                    +        +l+l+  g    fp+++++a++++ p++++g  ++++ ++++ +++ 
  CDO68592.1 404 GRMI---GgryvALFLVVGGNYSLFPLVMSWAANVFaPTSKRGVGTAFIVSISNCVSIA 459
                 2222...25664555555588888*********999899*********99555544444 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.29
       MFS_1 161 sllafvlfll 170
                 +l+a  l+++
  CDO68592.1 481 CLFASFLAAF 490
                 2222112222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4275.65
//
Query:       CDO68593.1  [L=501]
Description: hypothetical protein BN946_scf184996.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-33  115.8   0.0    4.9e-33  114.6   0.0    1.6  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
    9.8e-07   29.2   0.1      0.048   14.2   0.0    3.4  3  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.085   12.1   0.1        2.2    7.4   0.0    2.7  3  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   8.2e-37   4.9e-33       2     294 .]      31     406 ..      30     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 8.2e-37
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHC..........CTCEEEEESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllg..........eevvkidpgkkkvklek 89 
                  ++v++G+G++G++  + + ++  +v++v +  + +n+++ll++  +g+ e++  a e v++++ +++  ++          +e  ++           
   CDO68593.1  31 RLVILGSGWGGYEILRAIDKKRWNVIVV-SPSNYFNFTPLLASCSVGTLEFRA-AVEPVRRYTPDVMPATApvklpesghpTERSDV----------- 115
                  78**************************.**********************96.667789999999988884444444444444444........... PP

                  EEC.........TCEEEEEESEEEE---E...............EE-BC...TCTTC.TTBEECCSECHHHHHHCCSS-T.................. CS
                  xxx.........xxxxxxxxxxxxxxxxx...............xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
  Pyr_redox_2  90 kke.........gdeekiaydklvlAtGs...............sprdl...gipGvaenvgklvrtldsaealklkllp.................. 142
                    +          ++++++ydklv+A G+                +rd+   ++pGv+e++++l + +++a+a++   l+                  
   CDO68593.1 116 --NesassvkgsTEKFQLTYDKLVIAVGAysqstatyylvrsaaDARDCaafNVPGVKEHAHFL-KDIRDARAIRTRILDcfeqanqptitdadrrkl 210
                  ..33445555557889************99999888888886664444477799999****999.***************************999877 PP

                  SEEEEES-SHHHHHHHHHHHHHT-.....................................EEEEEESSSSSSTTS-HHHHHHH.HHHHHHTTEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgk.....................................evtlveardrllraldkelsaal.eealekeGvevkl 202
                   ++++vGgG++GvE+Aa+l+++ +                                        +v++++  l  l   +s+++ + ++++eG+++ +
   CDO68593.1 211 LNFCIVGGGPTGVEFAAELHDFLHtdlarhypvlarmakinlydvapvilggfdtglqeyvSFSVVYHNKASLALLTTPVSNRYaTSKFKREGIRLLT 308
                  778****************9997778888898898888899998888888888888887776669999999997777777766515677888****** PP

                  SCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSBE.......SSTTEEE-GGGC..TECCSS--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx..xxxxxxxxxxxx RF
  Pyr_redox_2 203 gtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdeflrt.......nvpgiyaiGDva..ggkggpelaqaA 290
                  ++ v+++++      +  +++ e+d  l+v+++G+ p++ ++   +++     ++ +v++ +l++        + +++aiGD a  +++  p++aq+A
   CDO68593.1 309 QHHVERVEAGR----MFVTEEGEVDFGLLVWSTGLAPNPLIQSiTEAKKDERTKRSLVTNGNLNVimkdtgaPDSDVFAIGDAAliQDQPLPATAQVA 402
                  *******9666....666777779***************999896666666688899999999544444453599*********************** PP

                  HHHH CS
                  xxxx RF
  Pyr_redox_2 291 vqqG 294
                   qq+
   CDO68593.1 403 NQQA 406
                  *997 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.028   1.7e+02       1      33 [.      31      63 ..      31      71 .. 0.88
   2 !   14.2   0.0   8.1e-06     0.048       3      21 ..     214     232 ..     212     272 .. 0.76
   3 !    8.1   0.0   0.00064       3.8      43      68 ..     292     317 ..     267     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.028
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33
                ++v++G+G+ g E   a+ + + +V vv  s+ 
  CDO68593.1 31 RLVILGSGWGGYEILRAIDKKRWNVIVVSPSNY 63
                68*************999999999999988775 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8.1e-06
                 EEECSSHHHHHHHHHHHHT CS
   Pyr_redox   3 vvvGgGyiglElAgalael 21 
                  +vGgG +g+E+A++l+++
  CDO68593.1 214 CIVGGGPTGVEFAAELHDF 232
                 69**************553 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00064
                 HHHHHHHHHHTTEEEECSEEEEEEEE CS
   Pyr_redox  43 skilqeklekngievllntkveeieg 68 
                  ++ + k++++gi++l+++ ve++e 
  CDO68593.1 292 NRYATSKFKREGIRLLTQHHVERVEA 317
                 34558999****************95 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.069   4.1e+02     112     138 ..     120     146 ..     110     155 .. 0.76
   2 ?    7.4   0.0   0.00038       2.2       2      19 ..     215     232 ..     214     253 .. 0.90
   3 ?   -0.1   0.0     0.072   4.3e+02      85     147 ..     293     352 ..     266     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.069
  Pyr_redox_3 112 egfevetsketyeAkkviiAtGefdkP 138
                  ++ + +t+k +++ +k++iA G +++ 
   CDO68593.1 120 SSVKGSTEKFQLTYDKLVIAVGAYSQS 146
                  4445567888999999******99875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00038
  Pyr_redox_3   2 IiGaGPaGlaaaielkka 19 
                  I+G+GP G+++a el ++
   CDO68593.1 215 IVGGGPTGVEFAAELHDF 232
                  9*************9876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.072
  Pyr_redox_3  85 eYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGee 147
                  +Y ++  k++ ++  ++++Ve+v+  +  f   t+++++    ++++tG   +P  ++i  ++
   CDO68593.1 293 RYATSKFKREGIRLLTQHHVERVEAGR-MF--VTEEGEVDFGLLVWSTGLAPNPLIQSITEAK 352
                  677777788888888889998887654.44..4888999999999999987777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3452.64
//
Query:       CDO68594.1  [L=303]
Description: hypothetical protein BN946_scf184996.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-11   42.7   0.0    8.1e-10   38.6   0.0    2.1  2  WH1       WH1 domain
  ------ inclusion threshold ------
      0.061   13.7   0.0       0.15   12.4   0.0    1.7  1  PBD       P21-Rho-binding domain


Domain annotation for each model (and alignments):
>> WH1  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.022     2e+02       4      35 ..      32      64 ..      29      75 .. 0.71
   2 !   38.6   0.0   9.1e-14   8.1e-10      46     110 ..      92     157 ..      88     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.022
                S...EEEEEEEEEEEEEEE.TTTTCEEEECECE CS
         WH1  4 lgkkcqtiasavaqvylad.pakketWikakha 35
                l+  ++++a+a a++y+   +a+   W+ +   
  CDO68594.1 32 LPPDSKVLATASARIYHSAfNAAPDAWTFTGLR 64
                677899**********96425555668776555 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 9.1e-14
                 TTEEEEEEEETT.T-SEEEEEEE-SS---B-SSSSEEEEESSSSEEEEEESSHHHHHHHHHHHHHH CS
         WH1  46 qnsyflrlvklq.dakvvieqeiyknleynqarqkfhtfederavvGLnFaseeeakkFakkvqea 110
                 ++sy  rlv+l  ++ +v+ ++i +nl y+ ++++fh f++   ++G  F +  +a++F+k+v+++
  CDO68594.1  92 EQSYWFRLVDLDsGKGIVWFHQIPPNLDYQADKPFFHVFSGCSRMFGFRFDEDLDAEHFLKRVTSR 157
                 789*********9999***********************************************986 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05      0.15       1      40 [.     196     242 ..     196     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
                 -B---..EEEEEEEEEEEETTTTEEE..S--CCHCCCHHHT....TT CS
         PBD   1 eIStP..tnfkHtvHVGwdgdsgnft..glPpewkkllkss...gIt 40 
                 +IS+P  + f H++H G d++   +   +  + w  +l+++   g++
  CDO68594.1 196 MISSPspGTFMHVAHLGVDSEGYIDAspNVEQGWTMILEELqgyGVS 242
                 788877799***********877776889999998888877555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2185.98
//
Query:       CDO68595.1  [L=820]
Description: hypothetical protein BN946_scf184996.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-33  113.9   0.0    1.2e-16   61.0   0.0    3.6  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
  ------ inclusion threshold ------
      0.031   14.4   0.0        0.1   12.7   0.0    1.8  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.3e-20   1.2e-16       3     103 ..     161     292 ..     159     304 .. 0.83
   2 !   47.6   0.0   1.7e-16   1.5e-12     109     200 .]     322     465 ..     307     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.3e-20
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTT..........SEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC......... CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknk..........gtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg......... 77 
                      +L+ +++ +++D+caaPG+KT+ ++e ++ +          g ++A+d + +R+  +++  +rL+  +++v++ Da+ ++ +            
       CDO68595.1 161 FLEVEPHHRVIDMCAAPGSKTAQLLEALHANdtltsssipsGLLIANDSDYKRTYLLIHQSSRLPSPSLMVTNLDASIFPAIKIPseqttfpah 254
                      79999******************9997554311222222226789********************************998654334489999** PP

                      ..............EEEEEEEE--CCGGGTTT-TCHHH CS
  Methyltr_RsmB-F  78 ............elfDriLlDaPCsgtgvirrdpdvkl 103
                                   +fDriL D+PCsg g+ir++p +  
       CDO68595.1 255 tkarvaakrqyqLMFDRILCDVPCSGDGTIRKNPGIWK 292
                      *********99889********************9944 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 1.7e-16
                      HHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC....................... CS
  Methyltr_RsmB-F 109 diaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeea....................... 179
                       +++  +lq ++l+ a+ +lkkgG +vYsTCs+++ Ene+v+++aLk+ +  elv+++ +   gl + ++                        
       CDO68595.1 322 AVSAPLSLQLRILQRAMRMLKKGGRIVYSTCSLNPVENEAVVAAALKSIPGFELVDMSNHL-PGLIYRQGMtswkpsvnkeintefatyqdyiq 414
                      56677899************************************************96554.444444444559999999************** PP

                      ..............................TSEEE-TTTTSS-SEEEEEEE CS
  Methyltr_RsmB-F 180 ..............................gtlrllPhtenkdgffiaklk 200
                                                       r++Ph +++ gffia l+
       CDO68595.1 415 sldeaqrgnskmleshwpptpeeaeklgltRCFRIYPHLQDTGGFFIAVLQ 465
                      **************************99888899*************9885 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05       0.1      20     136 ..     165     352 ..     131     380 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
                 -TT-EEEECT-TTSHHHHHHCCT.T...........-SEEEEEESSSS.............HHHTTEEEECS-CCCSSHHHHHCHCHHH.......... CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlga..........kgkvvavDlqpm.............aplpgvttiqgditdpetiekikealse.......... 85 
                 +p ++v+D +aaPG+ +  ll+ l+a          +g ++a D                 +  p + + + d     +i+  +    e          
  CDO68595.1 165 EPHHRVIDMCAAPGSKTAQLLEALHAndtltsssipSGLLIANDSDYKrtyllihqssrlpS--PSLMVTNLDASIFPAIKIPS----Eqttfpahtka 257
                 57899******************966333333333236666666544445555554422211..22222222222222222111....01222334444 PP

                 .........SSEEEEEE--S-..................................SS-CHHHHHHHHH.CCCCHHHHCCHCCCCECCCEEEECCC CS
        FtsJ  86 .........rkvdlvvsDgap..................................dvsgvhdldeylq.sqLllaalelalkllkpggtfvlkif 136
                            +d +++D+                                     +  +++l ++ + ++L l+ l+ a+++lk+gg +v  ++
  CDO68595.1 258 rvaakrqyqLMFDRILCDVPCsgdgtirknpgiwkhwspmdgnglhrfglpcscsICAIRNELTAVSApLSLQLRILQRAMRMLKKGGRIVYSTC 352
                 45554444445777777764456666666666666666666666666666664422222344444443556777777777777777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 5758.00
//
Query:       CDO68596.1  [L=1677]
Description: hypothetical protein BN946_scf184996.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-68  230.8   0.9    1.8e-68  230.8   0.9    2.4  2  SNF5            SNF5 / SMARCB1 / INI1
  ------ inclusion threshold ------
        3.8    7.2   6.0        8.1    6.2   6.0    1.6  1  GATA            GATA zinc finger


Domain annotation for each model (and alignments):
>> SNF5  SNF5 / SMARCB1 / INI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.0      0.22   1.9e+03      78     104 ..     332     359 ..     304     400 .. 0.50
   2 !  230.8   0.9   2.1e-72   1.8e-68       2     235 ..     929    1230 ..     928    1232 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.22
        SNF5  78 el.asekkesatpaekkeseedtpkaki 104
                 ++ ++++++++++ ++++s+++++++++
  CDO68596.1 332 QMlQQQQQQQQQQSQQHHSQQQHQSQPH 359
                 2212222222222221111111111111 PP

  == domain 2  score: 230.8 bits;  conditional E-value: 2.1e-72
        SNF5    2 aekpetLvPiridldidkyrlrDtFlwNlhetlitpeqFaqtlveDldlpeeaavveeiskqireqleeyagvalhelase................ 82  
                  a+kpe+LvPir+++d++++++rDtF+wNl++++itpe+Faq++v+D++l   +++ + i+k+i+eql++y+   +  + ++                
  CDO68596.1  929 AKKPEQLVPIRLEFDVEHHKMRDTFVWNLSDPIITPEIFAQSIVDDYSLA--PSYHAIITKSIQEQLSDYK-AHSATFGEDgtslmltdaddadded 1022
                  899***********************************************..7799**************2.2222233335667777666644433 PP

        SNF5   83 ..........kkesatpaekkeseedtpka.............................................kiseeeek..........eeke 114 
                            +               ++++                                             +                 e+++
  CDO68596.1 1023 evvmrgrindE---------------EAAWwaawrkrvrskalykltapppevrsrkrrkvvkeetpaasvaprpE------GdvpmavddfeEDEK 1098
                  33333333330...............33335666666666677777777776666666655555555555444440......045555556646777 PP

        SNF5  115 nkddelRvlikldiqigsklltDkfEWdllsplntpEeFAkqlcadlgLsgefvtaiaHaIrEqvlkykksllesgllvaglkk....leagwrfd. 206 
                   +++e+R+likldi +gs +l+D+fEWdl +   tpE+FA+++c+dlgL gef+taiaH+IrEqv+ y+ksl+ +g  + g +     l        
  CDO68596.1 1099 LMHEEMRILIKLDIVVGSIKLEDQFEWDLENRDPTPEQFAEVYCKDLGLGGEFKTAIAHSIREQVQIYQKSLFLVGHPSDGSAVqdddL------Rm 1189
                  9************************************************************************5555555544434441......03 PP

        SNF5  207 ............eelaeefepkleelskeelekrekerere 235 
                              +e++e+f+p l++ls++e+ek+ek+re+e
  CDO68596.1 1190 sllpslvsgarsMEQVEAFTPVLQYLSESEIEKNEKDREKE 1230
                  344444445544778************************98 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.0    0.0009       8.1       1      35 [.    1419    1455 ..    1419    1456 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0009
        GATA    1 CsnCgttkTplW..RrgpdgnksLCnaCGlyykkkgl 35  
                  CsnCg  ++     R+gp g ks C  CG y+  +++
  CDO68596.1 1419 CSNCGCPESIAIgrRKGPLGDKSQCGTCGKYWHRHRR 1455
                  99******965544888***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2671  (0.148977); expected 358.6 (0.02)
Passed bias filter:                      895  (0.0499191); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.92u 0.40s 00:00:02.31 Elapsed: 00:00:00.61
# Mc/sec: 8279.45
//
Query:       CDO68597.1  [L=607]
Description: hypothetical protein BN946_scf184996.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-38  130.0   0.0    1.5e-37  129.1   0.0    1.5  1  NAD_binding_6  Ferric reductase NAD binding domain
      7e-23   80.8   0.0    1.5e-22   79.7   0.0    1.6  1  FAD_binding_8  FAD-binding domain
    1.8e-19   70.1   9.2    1.8e-19   70.1   9.2    2.7  3  Ferric_reduct  Ferric reductase like transmembrane component
  ------ inclusion threshold ------
       0.04   14.3   0.0      0.082   13.3   0.0    1.5  1  FAD_binding_6  Oxidoreductase FAD-binding domain
      0.083   12.7   0.3       0.24   11.2   0.3    1.7  1  Pam17          Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   4.1e-41   1.5e-37       1     156 []     440     590 ..     440     590 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 4.1e-41
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkksk....kealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqlissie 92 
                    ye+vllv++GiG+tpf+silk ++++++    +++++  k+++ wv+r+ +s ewf+ +L  +ee++ +++iei+iYlT + +++d  + + +   
     CDO68597.1 440 YETVLLVGAGIGVTPFASILKSIWYRMNnfnsSKPTRLSKVYFTWVIRDFGSAEWFHSLLHAIEEQDTQNRIEINIYLTAKIKEDDMNNIIVQD-- 533
                    89*************************999999******************************************************8844433.. PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  93 genseslkqgvdavsgtrnvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkklva 156
                           +++ da++ +r + +hfgRPn+++v+++ia+kh+++ vgvf CGp++l++++  +++
     CDO68597.1 534 -----VGAEK-DAITSLR-APTHFGRPNWDRVFSSIAEKHPETDVGVFFCGPAVLSRQLHTMCN 590
                    .....33445.8999***.****************************************99996 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   4.2e-26   1.5e-22       7     108 ..     319     433 ..     313     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 4.2e-26
  FAD_binding_8   7 akvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasapeddklslvikvksgltkklakkllsssk............... 87 
                     kv   ++++++l+++k k      aGqy++i +p++s  ++q+HPFt++sape+d++s++i+v +++t+ lak +    +               
     CDO68597.1 319 SKVIQHPSNVMELQIKKEKT--TTRAGQYIFICVPEIS--YFQWHPFTLTSAPEEDYISVHIRVVGDFTSALAKAVGCDFDkkkgekddlggkvig 410
                    5788899************8..99**************..99********************************9976655789************ PP

  FAD_binding_8  88 ..kelenkkaklkvlidGPYGap 108
                      +++  +   ++v++dGP+G++
     CDO68597.1 411 taANPPINRVLPRVMVDGPFGSA 433
                    997777888999*********87 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5       0.1   3.7e+02     102     120 ..      84     101 ..      81     105 .. 0.85
   2 !   70.1   9.2   4.9e-23   1.8e-19       5     122 ..     138     263 ..     127     264 .. 0.81
   3 ?   -2.5   0.0       1.5   5.3e+03      49      63 ..     494     508 ..     462     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.1
  Ferric_reduct 102 rrrlsyelFyylHhllyva 120
                    r r+++ +F +lH l++++
     CDO68597.1  84 R-RMFFGVFIFLHALVIAL 101
                    4.99999******999875 PP

  == domain 2  score: 70.1 bits;  conditional E-value: 4.9e-23
  Ferric_reduct   5 alillplall.la.lRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsal.........deerlldsllkkpynllGvlalll 89 
                    a+illp+    ++ lR ++l+  + +++dk+++fHk +++ +++++++H++++++nf     +         +  ++l+ ++++   ++G++++++
     CDO68597.1 138 AFILLPVCRNfISiLRRTPLN--SFIPFDKNITFHKAVAWSIVVFTVIHIAAHMVNFAELAMAdpdantagkKVVAFLAANFATGPGATGWIMTAA 231
                    455555433223356666665..9*********************************9866558877776666666666666666666******** PP

  Ferric_reduct  90 liilaitSlkfirrrlsyelFyylHhllyvayl 122
                    l++++  +++  r r  +e+F+y+Hhl++v+++
     CDO68597.1 232 LGVMVWYAMEKRR-RAHFEWFWYTHHLFIVFFI 263
                    *************.999**************97 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
  Ferric_reduct  49 llHvilyllnflrfs 63 
                    ++H +l+++ ++ ++
     CDO68597.1 494 WFHSLLHAIEEQDTQ 508
                    456666666666555 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.082      16      80 ..     328     387 ..     315     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                    EEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHH CS
  FAD_binding_6  16 ifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLd 80 
                    +++  l+ +k+k   ++Gq++f++++      + ++t++s++ e+ ++ ++++v+  G +++aL 
     CDO68597.1 328 VME--LQIKKEKTTTRAGQYIFICVPEISYFQWHPFTLTSAP-EEDYISVHIRVV--GDFTSALA 387
                    444..44556666999**********556679*****77766.567999****98..77777774 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   6.7e-05      0.24      40     108 ..     178     248 ..     157     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.7e-05
       Pam17  40 ivtallglllgaavlst.leidptqqilglDplvvlgla.tlasgalGwllGpvlgsavfkllnrkklkql 108
                 +v +++ +++ +  +++   +dp ++  g   + +l++   ++ ga+Gw++  +lg +v++++++++++++
  CDO68597.1 178 VVFTVIHIAAHMVNFAElAMADPDANTAGKKVVAFLAANfATGPGATGWIMTAALGVMVWYAMEKRRRAHF 248
                 3344444444444555535567777777777766665541446789*****************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3951.10
//
Query:       CDO68598.1  [L=354]
Description: hypothetical protein BN946_scf184996.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-36  123.8   0.0    9.7e-36  123.4   0.0    1.1  1  Glyco_hydro_28  Glycosyl hydrolases family 28
  ------ inclusion threshold ------
       0.25   11.2   2.6       0.44   10.4   0.7    2.4  2  Beta_helix      Right handed beta helix region


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   1.1e-39   9.7e-36      55     321 ..      47     339 ..       8     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 1.1e-39
  Glyco_hydro_28  55 sgekitvlgisGkgtidGqGqawwdgkgkkk.kegkkkpkflvikkvknskiknlniknspvfhfsvesgkdltisditidasagd......... 139
                     +g++ t+      g i G+Gq+ww   g+++  +g   p +l + +v+  ++ + ++   p+ +  v ++ d++ + +   a++ d         
      CDO68598.1  47 TGQDFTIDAHRT-GGIVGNGQHWWSWYGNATrLDGDGRPVALSLVNVTRGTVRDFTVDSPPFWCNAVADARDVVYDGMRCIAQNADatyfgqniv 140
                     555554444333.5799*********99998899*******************************************98777777779******* PP

  Glyco_hydro_28 140 hNtDgidvgsskgvtisntnikngDDciainsgsk..nisitnvtcggGHGlSiGSvggrsd..ntVknvtvkdskvknsenGvRIKtik..... 225
                      NtDgid  +++++t+ n  i+ gDDc+ai+  +   + +i     +   G+  GS+g++ d  ++V+nv ++d ++++ +  +  K++      
      CDO68598.1 141 WNTDGIDTFRADNITLRNFDITSGDDCLAIKGVKAleHSQIARERTNESTGIAFGSLGQYADlpDYVNNVLLEDVTLIQPDPQIYFKSWTgtrig 235
                     ******************************9888666888999999999*************999*************99999999999877777 PP

  Glyco_hydro_28 226 .......gatgtvsnvkyeniklknvaypividqdYenkeptgkptsgvkisdvtfknvtgtvksaeavkllcekgskcsdvtmsdvkitg..g. 310
                            +  g vs+v   n+kl+nv+ pi + q   n +  g ++s+++  ++tf+n tgt ++a+ v ++c+ + +c+++ ++ +++    g 
      CDO68598.1 236 fpptgggAGGGRVSGVVVRNVKLENVTTPIQLYQT--NLGHPGDAPSKLQFANLTFENWTGTAQGATMVDFECSPAAPCENLSFKSIDVAPpmGt 328
                     766776556789******************87664..556666677*******************************************875446 PP

  Glyco_hydro_28 311 kstskcknvks 321
                     + t +c nv s
      CDO68598.1 329 SPTYSCVNVAS 339
                     88999999975 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.33   2.9e+03     117     142 ..      34      61 ..      31      74 .. 0.56
   2 ?   10.4   0.7   4.9e-05      0.44      12      76 ..      96     172 ..      86     295 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.33
                 SEE---TT---EEES-EEE..S-SSEEE CS
  Beta_helix 117 GividdsssnvtvtnNtit..nnkgaGi 142
                 +i+i++++s+++vt+  +t   ++  Gi
  CDO68598.1  34 AIFIQSQASWFVVTGQDFTidAHRTGGI 61 
                 5777777755555555444213334444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.9e-05
                 EEESEEEES-SS-SEEE-SSS-........EEES-EEES......-SS-SEEE-TT-S-EEES-EEE---SEEE-TT- CS
  Beta_helix  12 tiknntisnsggyGiylrgssn.......vvienneian......nsgsGiyilgssnntisnntisdnngggialfg 76 
                 t++++t+++++  +  + ++++       ++ +n + ++      ++++Gi++ +++n+t++n  i+ +  + +a++g
  CDO68598.1  96 TVRDFTVDSPPFWCNAVADARDvvydgmrCIAQNADATYfgqnivWNTDGIDTFRADNITLRNFDITSGD-DCLAIKG 172
                 6667777777555555555555333333333334333334445555888888888888888888888776.4444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 2327.92
//
Query:       CDO68599.1  [L=177]
Description: hypothetical protein BN946_scf184996.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0044   16.8   0.0     0.0078   16.0   0.0    1.4  1  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.4e-07    0.0078       4      46 ..       7      50 ..       4      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.4e-07
      HTH_23  4 ereRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++ + ++l++ ++ Gl+ ++I r  g+s r +   +++yre G 
  CDO68599.1  7 KELKDLALKMSLVhGLPDKKIKRYTGISIRALKCLRQTYRETGE 50
                5667789**********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1250.70
//
Query:       CDO68600.1  [L=1743]
Description: hypothetical protein BN946_scf184996.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-51  172.5   0.0    1.9e-30  106.2   0.1    2.6  2  ABC_tran      ABC transporter
    1.3e-48  166.0  24.0      2e-28   99.8   4.0    3.2  3  ABC_membrane  ABC transporter transmembrane region
    4.2e-07   29.6   0.0     0.0075   15.7   0.3    3.7  3  SMC_N         RecF/RecN/SMC N terminal domain
    1.1e-06   28.0   6.0    0.00036   19.7   0.1    3.2  3  T2SSE         Type II/IV secretion system protein
    9.8e-06   25.6   2.0       0.83    9.4   0.2    4.1  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.1e-05   25.1   0.5       0.21   11.4   0.1    2.7  2  AAA_29        P-loop containing region of AAA domain
    1.4e-05   25.6   2.3      0.099   13.0   0.0    3.1  2  AAA_16        AAA ATPase domain
    7.1e-05   22.5   0.8       0.13   11.9   0.2    2.8  2  AAA_25        AAA domain
    0.00014   22.4   0.1      0.029   14.9   0.0    2.6  2  AAA_23        AAA domain
     0.0011   19.2   1.9        6.2    7.1   0.1    3.4  3  AAA_22        AAA domain
      0.005   17.0   0.2      0.017   15.2   0.2    1.9  1  DUF87         Helicase HerA, central domain
  ------ inclusion threshold ------
      0.021   14.4   0.3        4.2    6.9   0.0    2.3  2  AAA_7         P-loop containing dynein motor region
      0.029   14.5   0.3       0.66   10.1   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
      0.042   13.9   0.0        4.1    7.4   0.0    2.5  2  Dynamin_N     Dynamin family
      0.042   14.0   0.3       0.16   12.1   0.1    2.2  1  DUF809        Protein of unknown function (DUF809)
      0.051   13.5   0.2       0.19   11.7   0.2    1.9  1  RseC_MucC     Positive regulator of sigma(E), RseC/MucC
      0.076   13.2   0.1         11    6.2   0.0    2.6  2  AAA_33        AAA domain
       0.57    9.7   1.8        6.7    6.3   0.1    2.3  2  cobW          CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.6e-20   2.6e-17       1     136 [.     784     930 ..     784     931 .. 0.89
   2 !  106.2   0.1   1.9e-33   1.9e-30       1     137 []    1460    1645 ..    1460    1645 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.6e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 lk++++ +  g+++ ++G++ +GK+ Ll +l+g+l+  eG+i + ++++k  +++ l++ i++  q p l  ++ +++n      +++++ +++++   
  CDO68600.1 784 LKDITVMFPDGKLTLVTGPTASGKTALLLALLGELTTLEGRIVMSKNPSKV-DKHGLSHTISYAAQSPWLRHQS-IKDNilfgypYDEDRYNAVVECCA 880
                 799***************************************888888888.9999**************9999.*********977777666666666 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 lk         ++t ++ ++ sLSgGqk rvalara+    k +llD+p 
  CDO68600.1 881 LKPdldiledGDATEIGARGVSLSGGQKARVALARAVYAPTKYVLLDDPL 930
                 66555555555578888899****************************97 PP

  == domain 2  score: 106.2 bits;  conditional E-value: 1.9e-33
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l+ vs++lk+ e+v+++G++G+GKStL++ l++  +pt+G+i +dg d++++ l+ lr++i ++pq+++lf+++ +r+n      + dee+ ++l++
  CDO68600.1 1460 LHGVSFSLKAKERVGLLGRTGSGKSTLAMSLLRFADPTSGRIIIDGIDITTIGLHDLRSRITFIPQDATLFSGT-LRDNldpfgeHTDEECLDVLHR 1555
                  689***********************************************************************.**********555556666666 PP

                  STTGG............................................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke............................................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  +++                                              + dt v+ +++++S+Gq+q +a+arall+++ +++lDE+t+
  CDO68600.1 1556 VQMLSdsqlasqrtsreasraasihenerdatvasvstsptetesktviTLDTQVSAGGTNFSQGQRQLIAMARALLRRSAIIILDEATS 1645
                  65555556666666666666666666777777888888888888999999999999999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   6.4e-06    0.0064       2      84 ..     363     443 ..     362     450 .. 0.82
   2 !   59.2   6.9     5e-19     5e-16      97     271 ..     486     657 ..     482     660 .. 0.93
   3 !   99.8   4.0     2e-31     2e-28       2     249 ..    1075    1367 ..    1074    1389 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.4e-06
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkki 84 
                   i+ ++l+ ++ + + + p++l++ild l+ +g +    +  ++ +++ll++a++++         + g r+ +r+r++l+ +i
    CDO68600.1 363 IVDFVLTYVSIIFNYAGPFFLKQILDALSASGRNPE--MRALAFVYALLAFASSLCKAQADVQHLWFGRRAATRVRSELMASI 443
                   7789**************************999999..999999999999999988766555556677777777777777666 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 5e-19
                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                    G+++++++ d+++++  l++  ++   ++ ++++g+ ++ +lg   ++ ++++l+l  +++ ++ak+  +++k  ++a++k+  v++E +s+++ +
    CDO68600.1 486 IGKIVNLMAGDANRISMTLSSLYFIYGAPFEILIAGFFLYQLLGIA-AFTGFFVLVLSWPLNNFVAKRAVRIQKGLSTARDKRMGVLNELISAVKFI 581
                   69*******************************************6.9************************************************* PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271
                   k f++e++ +++  +++e + + ++ k ++n++ ++ ++ ++ +++++  +f+++  + +el++g++++ ++lf ++ 
    CDO68600.1 582 KFFAWEDRWIQRVLESREIEMQ-WMIKSRINSICFSLIWTCAPILVSVSSFFAYV-AQGHELTIGTAFTAIALFQMIR 657
                   ***************9998876.68889*********************886544.4467******999999998776 PP

  == domain 3  score: 99.8 bits;  conditional E-value: 2e-31
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.............................................HHHHHHHHHHHHHH CS
  ABC_membrane    2 iliillailagvlsplfplvlgrildtlldkgdpet.............................................ealnvysllllllg 51  
                    +++++l+il++vl +   ++++ + d + d +   t                                             e+  +y+ ++ +++
    CDO68600.1 1075 VILTILIILTQVLGIGEKIWIKIWGDAYGDPSGGPTqfaysysgfigqqhvlddslssfhhmphhaaapiqhskihfpparEHPYFYIGIYSAIA 1169
                    78999***********************998777778999999**************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH CS
  ABC_membrane   52 laqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlv 146 
                    l  ++++++ + + +  + r+s+ l  +l++ + r+ m+++d ++ G++l+r+++dv++++++l+ +l  + qsl++f +++i ++++ + + + 
    CDO68600.1 1170 LSTGLVNTVGVITQYTGALRASRILFERLLRTVVRATMRWHDVTPQGRMLNRFSKDVETVDTSLAGTLQSVNQSLALFAVSMITVIVVFPLFIFP 1264
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  147 llailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyal 241 
                     +++   +   ++ +  + +++++ e+++++++++ + E l+gi tV+afg+e++fl+   k+++   k +++   +n++l  ++++ g + +++
    CDO68600.1 1265 AVILGYFYRRAAIAYLNTGRDIRRMESNTRSPIFANFSELLEGIVTVRAFGAEQRFLDDLYKKVDLTTKMWYSFWMTNRWLLLTFDVYGAAGVLA 1359
                    *******************************************************************************************9999 PP

                    HHHHHHHH CS
  ABC_membrane  242 alwfGttl 249 
                    +++f+ + 
    CDO68600.1 1360 TTLFALSG 1367
                    98766543 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0042       4.1     135     181 ..     591     943 ..     423     980 .. 0.67
   2 ?    0.4   0.0      0.35   3.5e+02      27      44 ..    1473    1490 ..    1461    1494 .. 0.81
   3 !   15.7   0.3   7.5e-06    0.0075     135     210 ..    1603    1686 ..    1542    1692 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0042
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                                                                                                                    
  CDO68600.1 591 Iqrvlesreiemqwmiksrinsicfsliwtcapilvsvssffayvaqgheltigtaftaialfqmirlplnvipawivqilqskvaldriatyldeeev 689
                 055555555555566666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CDO68600.1 690 deqvstlkkgrvppseesdeglgivngtfkwneveekkendkgkgkdtgkkkangangvngasggeagpsdeastiadsasamaspgsgdhrfelkdit 788
                 666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CDO68600.1 789 vmfpdgkltlvtgptasgktalllallgelttlegrivmsknpskvdkhglshtisyaaqspwlrhqsikdnilfgypydedrynavveccalkpdldi 887
                 777777777777788888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ..............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHH CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ..............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvae 181
                               +LSgG+k+ vala       + p+  +llD+  +a D +  + + e
  CDO68600.1 888 ledgdateigargvSLSGGQKARVALA----RAVYAPTKYVLLDDPLSAVDSHTAQFLFE 943
                 888999999999999999999988765....44688888889999888888887776655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
                  EEEEESTTSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N   27 taivGpNGSGKsnlldAi 44  
                    ++G+ GSGKs l  ++
  CDO68600.1 1473 VGLLGRTGSGKSTLAMSL 1490
                  5689********998765 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 7.5e-06
                  T............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  x............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210 
                               ++S G+++L+a+a        +++++ +lDe  + +D++  +k+   ++e+  ++ ++ +++r +++ + d+l+ 
  CDO68600.1 1603 VitldtqvsaggtNFSQGQRQLIAMARA----LLRRSAIIILDEATSSIDFATDAKIQATIREEFGDSLLLTVAHRLRTVIDYDRLIV 1686
                  034444444444499********98754....58999*****************************************9999999875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   3.6e-07   0.00036     131     166 ..     796     831 ..     787     846 .. 0.87
   2 !    7.8   0.1    0.0016       1.6     134     162 ..    1475    1503 ..    1459    1510 .. 0.86
   3 ?    1.5   0.3      0.13   1.3e+02      33     140 ..    1536    1646 ..    1510    1647 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.6e-07
       T2SSE 131 lilvsGgTgsGKttllyallkeinksderivtvEDp 166
                 l lv+G+T sGKt ll all e+ + + riv+   p
  CDO68600.1 796 LTLVTGPTASGKTALLLALLGELTTLEGRIVMSKNP 831
                 679***************************986665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0016
       T2SSE  134 vsGgTgsGKttllyallkeinksderivt 162 
                  + G TgsGK+tl+ +ll + + ++ ri++
  CDO68600.1 1475 LLGRTGSGKSTLAMSLLRFADPTSGRIII 1503
                  5699****************999999975 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.13
       T2SSE   33 gielreveelekaalerlisriaalakldiseerplqdarlp.......ekgvrlrvvllPvvagealviRkksakeltlddlgaeealkekiaevl 122 
                  + +l++  e +++++  +++r+++l+ ++++++r   +a+         ++++   v++ P+  + + vi   ++ +    ++++ +++  ++a++l
  CDO68600.1 1536 D-NLDPFGEHTDEECLDVLHRVQMLSDSQLASQRTSREASRAasiheneRDATVASVSTSPTETESKTVITLDTQVSAGGTNFSQGQRQLIAMARAL 1631
                  3.58888899999*******************9999988766677777666666789999*999999999977777777777777777777777766 PP

       T2SSE  123 rkavrerglilvsGgTgs 140 
                   +      +i++  +T+s
  CDO68600.1 1632 LRR---SAIIILDEATSS 1646
                  555...677777777776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2   0.00083      0.83       1      20 [.     796     815 ..     796     844 .. 0.84
   2 ?    0.1   0.0      0.57   5.7e+02     208     301 ..     849     965 ..     831     967 .. 0.75
   3 ?    4.3   0.0     0.029        29       3      25 ..    1474    1496 ..    1473    1548 .. 0.68
   4 !    7.5   0.0    0.0032       3.2     236     282 ..    1616    1663 ..    1560    1678 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00083
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 l++++Gp +sGK+ LL al 
  CDO68600.1 796 LTLVTGPTASGKTALLLALL 815
                 699***************94 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.57
      AAA_21 208 liasvderlrer.......................gvvflengdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.e 280
                 ++++++  ++++                       ++ +le+gd  e+ ar +  S G+k   al+ a+++     + +l+D+p +  + +    l+ +
  CDO68600.1 849 SPWLRHQSIKDNilfgypydedrynavveccalkpDLDILEDGDATEIGARGVslSGGQKARVALARAVYAPT---KYVLLDDPLSAVDSHTAQFLFeK 944
                 4555555555556666666666677777777777788899999999999999988888888877777777644...56************999999988 PP

      AAA_21 281 ll..kelsrngaQviltTHSpll 301
                 l+   +l   +  v+l+TH  +l
  CDO68600.1 945 LFrgPLL--SNRTVVLVTHHVEL 965
                 8864444..4599******8777 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.029
      AAA_21    3 vliGpNgsGKSnLLdaldllarl 25  
                  +l G+ gsGKS+L   l  +a+ 
  CDO68600.1 1474 GLLGRTGSGKSTLAMSLLRFADP 1496
                  689**********9888777643 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0032
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllell 282 
                  ++S+G+++l+a++ allr+    +++++DE  ++++     k+++++ e +
  CDO68600.1 1616 NFSQGQRQLIAMARALLRRS---AIIILDEATSSIDFatdaKIQATIREEF 1663
                  57****************99...*******999999988888888887766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00021      0.21      17      42 ..     789     814 ..     780     821 .. 0.78
   2 !   11.2   0.1   0.00024      0.24      13      38 ..    1461    1486 ..    1459    1496 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_29  17 ieidlkg.atlltGpsGsGKSTllDAi 42 
                 +++  +g  tl+tGp+ sGK++ll A+
  CDO68600.1 789 VMFP-DGkLTLVTGPTASGKTALLLAL 814
                 4443.5679**************9655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00024
      AAA_29   13 dghtieidlkgatlltGpsGsGKSTl 38  
                  +g +++++ k+ + l G++GsGKSTl
  CDO68600.1 1461 HGVSFSLKAKERVGLLGRTGSGKSTL 1486
                  5677788888888999*********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.9e-05     0.099      23      63 ..     793     834 ..     783     959 .. 0.67
   2 !   10.0   1.2   0.00082      0.82      27     144 ..    1473    1643 ..    1465    1670 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                 ++ l+l++G+ ++GK++l+ +ll +l++ +  i+++ +  + 
  CDO68600.1 793 DGKLTLVTGPTASGKTALLLALLGELTTLEgRIVMSKNPSKV 834
                 45899**************99999888875255544444433 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00082
      AAA_16   27 vllsGesGvGKsslvrellralekd.....................ggiflrgkcdqlesa......ipy....sa.laqalareellrqlldeaes 91  
                  v l G  G+GKs+l+ +llr +  +                     ++ f+ ++++ + s+       p+    +   +++l r + l +   +++ 
  CDO68600.1 1473 VGLLGRTGSGKSTLAMSLLRFADPTsgriiidgidittiglhdlrsRITFIPQDATLF-SGtlrdnlDPFgehtDEeCLDVLHRVQMLSDSQLASQR 1568
                  5689***************988887777777666666666666665333333333333.11111111111222211122222222222222222222 PP

      AAA_16   92 aeleawrekleeala......................avpelagaea................srllellkrll.allsrderplvlvlDdl 144 
                  +++ea r+      a                      +        +                s+  ++l +++ all+r     +++lD++
  CDO68600.1 1569 TSREASRA------AsihenerdatvasvstspteteS--------KtvitldtqvsaggtnfSQGQRQLIAMArALLRR---SAIIILDEA 1643
                  22222222......022222244444444433333330........1334444444444434444444444444222222...257777765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   0.00013      0.13      29      59 ..     790     820 ..     784     834 .. 0.86
   2 !    8.0   0.0     0.002         2      29      54 ..    1466    1491 ..    1442    1500 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
      AAA_25  29 llpagelallaGapgtGKttlaldlalavat 59 
                 + p g+l+l++G++++GKt+l+l l  +++t
  CDO68600.1 790 MFPDGKLTLVTGPTASGKTALLLALLGELTT 820
                 5799********************9988774 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.002
      AAA_25   29 llpagelallaGapgtGKttlaldla 54  
                   l a+e + l G++g+GK+tla++l 
  CDO68600.1 1466 SLKAKERVGLLGRTGSGKSTLAMSLL 1491
                  4678899999*************996 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-05     0.029      11      39 ..     785     814 ..     780     836 .. 0.86
   2 ?    4.4   0.0     0.046        45      24      36 ..    1475    1487 ..    1468    1493 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-05
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildAi 39 
                 +d ++ F + +ltl+tGp+ +GKT++l A+
  CDO68600.1 785 KDITVMFpDGKLTLVTGPTASGKTALLLAL 814
                 56677787889***************9887 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.046
      AAA_23   24 ItGpNGaGKTTil 36  
                  + G +G+GK+T+ 
  CDO68600.1 1475 LLGRTGSGKSTLA 1487
                  67*********97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0063       6.2       6      29 ..     795     818 ..     792     843 .. 0.85
   2 ?    6.1   0.0     0.013        13      11      30 ..    1476    1495 ..    1472    1567 .. 0.82
   3 ?    3.3   0.1     0.094        93      37     102 ..    1581    1645 ..    1562    1677 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0063
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++++vtG++ +GKT ll  ll +l
  CDO68600.1 795 KLTLVTGPTASGKTALLLALLGEL 818
                 789**************9998877 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
      AAA_22   11 tGesGtGKTtllrrlleqld 30  
                   G +G+GK+tl+  ll+ +d
  CDO68600.1 1476 LGRTGSGKSTLAMSLLRFAD 1495
                  69***********9999886 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.094
      AAA_22   37 e..erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102 
                  e  ++++v++v  +  ++ ++    l  ++  ++ +  + +++l+ a+++al +r++  ++i+DEa  
  CDO68600.1 1581 EneRDATVASVSTSPTETESKTVITLDTQVSAGGTNFSQGQRQLI-AMARALLRRSA--IIILDEATS 1645
                  144555555666666666666667777777766666345555555.55555666656..7*****966 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.7e-05     0.017      23      46 ..    1470    1493 ..    1462    1505 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
       DUF87   23 trHlAilgsTGsGKSntvavLlee 46  
                  +++++ lg+TGsGKS+++ +Ll+ 
  CDO68600.1 1470 KERVGLLGRTGSGKSTLAMSLLRF 1493
                  5789*****************974 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.014        14      30      58 ..     791     819 ..     787     836 .. 0.83
   2 ?    6.9   0.0    0.0042       4.2      29      58 ..    1466    1495 ..    1460    1503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +  +k +l++Gpt +GKt+++  ll +l 
  CDO68600.1 791 FPDGKLTLVTGPTASGKTALLLALLGELT 819
                 5677889*************999988876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0042
       AAA_7   29 llknkkpvllvGptGtGKtviikdllkkld 58  
                   lk+k  v l G tG+GK++++++ll+  d
  CDO68600.1 1466 SLKAKERVGLLGRTGSGKSTLAMSLLRFAD 1495
                  57899999****************998776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.36   3.6e+02       4      22 ..     799     817 ..     797     837 .. 0.80
   2 ?   10.1   0.0   0.00066      0.66       1      33 [.    1472    1510 ..    1472    1523 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.36
                 EEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   4 ivGrpNvGKStLinaltge 22 
                 + G + +GK+ L+ al+ge
  CDO68600.1 799 VTGPTASGKTALLLALLGE 817
                 789**************97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00066
                  EEEEEESTTSSHHHHHHHHHT.....S.TEEESSSTTSS CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg.....e.kaivsdkpgtT 33  
                  +v+++Gr+ +GKStL  +l++     + + i+  +  tT
  CDO68600.1 1472 RVGLLGRTGSGKSTLAMSLLRfadptSgRIIIDGIDITT 1510
                  699*************99997444432355555555555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0041       4.1       2      40 ..     798     836 ..     797     878 .. 0.85
   2 ?    3.9   0.0      0.05        50       1      25 [.    1473    1496 ..    1473    1655 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0041
                 EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql 40 
                 +v G + sGK+++l aLlge     g ++++ +p ++ +
  CDO68600.1 798 LVTGPTASGKTALLLALLGELTTLEGRIVMSKNPSKVDK 836
                 599*******************************99987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.05
                  EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlgedilp 25  
                  + ++G + sGKS+++ +Ll+ +  p
  CDO68600.1 1473 VGLLGRTGSGKSTLAMSLLRFA-DP 1496
                  5789**************9987.34 PP

>> DUF809  Protein of unknown function (DUF809)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00016      0.16      22     132 ..     626     741 ..     605     750 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
      DUF809  22 vsvisffllafllmahiwlswfsnnqhclrtmrhleklkipyefqygwlgvkit...iksnvpndevtkkvspiikgeiegkeekkegkgeiegk.... 113
                 vsv sff  a++   h      +    +l  m +l    ip       l  k++   i + + ++ev ++vs + kg +   ee  eg g ++g     
  CDO68600.1 626 VSVSSFF--AYVAQGHELTIGTAFTAIALFQMIRLPLNVIPAW-IVQILQSKVAldrIATYLDEEEVDEQVSTLKKGRVPPSEESDEGLGIVNGTfkwn 721
                 4555544..5555555555555555555555655555555532.233344444411256778899***********************99887742232 PP

      DUF809 114 ..eekkegkgeiegkeekkev 132
                   eekke   + +gk+  k+ 
  CDO68600.1 722 evEEKKEN-DKGKGKDTGKKK 741
                 22333332.222344443433 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00019      0.19      61     118 ..     501     553 ..     477     560 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
   RseC_MucC  61 ksllkaallvYllPllllilgallgsallgssellaalgallglvlgflivrllskrl 118
                 ++ l++  ++Y+ P+ +li+g +l ++l     ++aa++++++lvl++ +  +++kr+
  CDO68600.1 501 SMTLSSLYFIYGAPFEILIAGFFLYQLL-----GIAAFTGFFVLVLSWPLNNFVAKRA 553
                 46788999********************.....6*************99999888875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.045        45       1      24 [.     796     819 ..     796     850 .. 0.87
   2 ?    6.2   0.0     0.011        11       5      21 ..    1476    1492 ..    1473    1578 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.045
      AAA_33   1 lvllvGlpGsGKstlaerllkklg 24 
                 l+l+ G+ +sGK+ l+  ll +l+
  CDO68600.1 796 LTLVTGPTASGKTALLLALLGELT 819
                 67899***********99999887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.011
      AAA_33    5 vGlpGsGKstlaerllk 21  
                   G  GsGKstla +ll+
  CDO68600.1 1476 LGRTGSGKSTLAMSLLR 1492
                  6889**********986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0067       6.7       3      28 ..     797     822 ..     795     847 .. 0.76
   2 ?    2.3   0.1      0.11   1.1e+02       4      30 ..    1474    1500 ..    1472    1513 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0067
                 EEEEESTTCCHHHHHHHHHCT--SS- CS
        cobW   3 tvltGflGsGKTtLlnhllenraglk 28 
                 t++tG+  sGKT+Ll +ll +   l+
  CDO68600.1 797 TLVTGPTASGKTALLLALLGELTTLE 822
                 89***************995555544 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
                  EEEESTTCCHHHHHHHHHCT--SS-EE CS
        cobW    4 vltGflGsGKTtLlnhllenraglkla 30  
                  +l G  GsGK+tL  +ll+ ++  +  
  CDO68600.1 1474 GLLGRTGSGKSTLAMSLLRFADPTSGR 1500
                  578999*******99999665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.57
# Mc/sec: 9172.45
//
Query:       CDO68601.1  [L=1656]
Description: hypothetical protein BN946_scf184996.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-50  171.3   0.0    9.5e-30  103.9   0.0    2.6  2  ABC_tran       ABC transporter
    9.5e-50  169.8  21.3    1.9e-28   99.9   3.2    3.3  3  ABC_membrane   ABC transporter transmembrane region
    4.4e-08   32.5   0.6    0.00025   20.2   0.1    2.4  2  T2SSE          Type II/IV secretion system protein
    1.4e-06   27.9   0.9      0.047   13.1   0.1    4.5  4  SMC_N          RecF/RecN/SMC N terminal domain
    4.5e-06   26.4   0.4      0.047   13.3   0.2    2.6  2  AAA_25         AAA domain
    6.4e-06   25.8   0.5       0.16   11.7   0.0    2.7  2  AAA_29         P-loop containing region of AAA domain
    1.5e-05   25.5   0.8       0.17   12.3   0.0    2.8  2  AAA_16         AAA ATPase domain
    2.6e-05   24.2   4.1       0.81    9.4   0.2    4.3  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00012   22.7   0.2      0.031   14.8   0.0    2.6  2  AAA_23         AAA domain
     0.0013   19.1   0.5        5.8    7.2   0.1    3.3  3  AAA_22         AAA domain
     0.0058   16.2   0.4        1.6    8.3   0.0    2.3  2  AAA_7          P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.013   15.6   0.3      0.039   14.1   0.3    1.8  1  DUF87          Helicase HerA, central domain
      0.018   14.0   1.1       0.11   11.4   0.1    2.1  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.022   14.8   1.5       0.36   10.9   0.0    2.9  3  MMR_HSR1       50S ribosome-binding GTPase
      0.023   14.9   0.2        4.9    7.3   0.0    2.9  2  AAA_33         AAA domain
      0.042   13.8   0.8        1.2    9.1   0.1    3.0  3  AAA_5          AAA domain (dynein-related subfamily)
      0.059   13.4   0.8        3.7    7.6   0.0    2.6  2  Dynamin_N      Dynamin family
      0.061   12.6   0.1        9.4    5.4   0.0    2.4  2  Zeta_toxin     Zeta toxin
       0.11   12.3   0.0        1.2    9.0   0.0    2.6  3  ATPase_2       ATPase domain predominantly from Archaea
       0.15   11.9   0.2        8.9    6.2   0.0    2.4  2  RsgA_GTPase    RsgA GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   1.2e-20   1.1e-17       1     136 [.     704     850 ..     704     851 .. 0.89
   2 !  103.9   0.0   1.1e-32   9.5e-30       1     137 []    1374    1557 ..    1374    1557 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.2e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 lk++++ + eg+++ ++G++ +GK+ Ll +l+g+l+  eG+i + ++++k  ++  l++ i++  q p l  ++ +++n      +++e+ +++++   
  CDO68601.1 704 LKDITVMFPEGKLTLVTGPTASGKTALLLALLGELTTLEGRIVMSKNPSKV-DKDGLSHTISYAAQSPWLRHQS-IKDNilfgypYDEERYNAVVECCA 800
                 799***************************************888888888.999***************9999.*********977777666666666 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 lk         ++t ++ ++ sLSgGqk rvalara+    k +llD+p 
  CDO68601.1 801 LKPdleifedGDATEIGARGISLSGGQKARVALARAVYAPTKYVLLDDPL 850
                 65555565555678888999****************************97 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 1.1e-32
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l+ +s++lk+ e+v+++G++G+GKStL++ l++ ++pt G+i +dg d++++ l+ lr++i ++pq+++lf+++ +r+n      + d+e+ ++l++
  CDO68601.1 1374 LHGISFSLKAKERVGLIGRTGSGKSTLAMSLLRFVDPTGGRIIIDGIDITTIGLHDLRSRIIFIPQDATLFSGT-LRDNldpfgeHTDVECLDVLHR 1469
                  689***********************************************************************.**********777778888888 PP

                  STTGG..........................................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke..........................................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  ++l+                                           + dt v+ +++++S+Gq+q +a+arall+++ +++lDE+t+
  CDO68601.1 1470 VQLTSpdnqlalkrlsgeaseaasihdpergaatstsateidskseiTLDTQVSVGGTNFSHGQRQLIAMARALLRRSAIIILDEATS 1557
                  887777788888888888888888888888888888888888888888899999999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00041      0.37       1      84 [.     287     370 ..     287     388 .. 0.76
   2 !   67.7   5.9   1.3e-21   1.2e-18      97     274 .]     410     584 ..     406     584 .. 0.90
   3 !   99.9   3.2   2.1e-31   1.9e-28       2     272 ..     987    1300 ..     986    1302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll.nvtgerlskrlrrklfkki 84 
                   li+ ++l+  + + + + p++l+ ild l ++g     ++  ++  ++l +++++ ++ +q  l  ++ g r+ +r+r++l+ +i
    CDO68601.1 287 LIVNFVLTYTSAIFKYAGPFFLKLILDALDVSGRIPAPEQRALAFSYAL-LAFVSTMCRAQADLQhMWFGRRAATRIRSELMASI 370
                   68899**************************988888333333333333.34455667777777766688888888888888776 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 1.3e-21
                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                    G+++++++ d++ ++  +++  ++   ++ ++++g+ ++ +lg + ++++l+i++l  +++ +i++++ ++kk  +++++k+  v++E +s+i+ +
    CDO68601.1 410 IGKIVNLMSGDADHISFTVSTLYFIYGAPFEVLIAGIFLYRLLGIS-AFAGLFIILLSWPFNSFITQRSVRVKKGLSTTRDKRMGVLNELISAIKFI 505
                   69*******************************************8.8************************************************* PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   k f++e++ +++  +a++++ + +ik++i+ + ++   ++l+ll+ ++a++  ++  + +el++g++++ ++lf ++ ++l
    CDO68601.1 506 KFFAWEDRWIQRAMDARKSEMQWMIKSCIYGMCFSFLWTCLPLLVSIAAFF--AYVAQGNELTIGTAFTAIALFQMIRTPL 584
                   *********************998888876655555555555555555544..4555568**************9999886 PP

  == domain 3  score: 99.9 bits;  conditional E-value: 2.1e-31
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH................................................HHHHHHHHHHH CS
  ABC_membrane    2 iliillailagvlsplfplvlgrildtlldkgdpet................................................ealnvysllll 48  
                    ++++++ +l++vl ++  l+++ + + + d + + +                                                e+  +y+ ++ 
    CDO68601.1  987 VILFVMVVLTQVLGVAEKLWIKIWGEAYGDPAGQ-SmqlaypyracgqqqeilgdggfrlqpsylayhpmhatrmaeiefpsarEHPYFYIGIYS 1080
                    5778888888888888888888888888774333.2367778888888888888888888888888888888888888888888899******** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHH CS
  ABC_membrane   49 llglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkl 143 
                    +++la +++  + +   +  + r+s+ l  kl++ + ++ m+++d ++ G++l+r+++dv++++ +l+ +l  + qsl +f +++i ++++ + +
    CDO68601.1 1081 AIALATGLVINIGVLAQSLGALRASRILFEKLLRTVVHATMRWHDVTPQGRMLNRFSKDVETIDMSLAGTLESVYQSLGSFAVSVITVIVIFPLF 1175
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  144 tlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllglls 238 
                     +  +++  ++  +++ +  + ++l++ e ++++++++ + E l+g+ tV+afg+e++fle   k++++a k +++   +n++l  +++ lg + 
    CDO68601.1 1176 IVPATFLGYMYRRIAIAYLNTGRDLRRMEANSRSPIFADFSELLEGVVTVRAFGAEQRFLEDLYKKVDSATKMWYTFWMTNRWLLLTFDTLGAAG 1270
                    999******************************************************************************************** PP

                    HHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH CS
  ABC_membrane  239 yalalwfGttlvisgelsvgdlvvflslfailfg 272 
                    ++++++    + +sg ++ g + v+++ ++ +++
    CDO68601.1 1271 VLATTL----FTLSGSIDAGLAGVCITSAMSFTT 1300
                    ****65....555577777777777777666665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.8e-07   0.00025     130     167 ..     715     752 ..     704     767 .. 0.86
   2 !   10.1   0.0   0.00034       0.3     122     162 ..    1377    1417 ..    1349    1427 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.8e-07
       T2SSE 130 glilvsGgTgsGKttllyallkeinksderivtvEDpv 167
                 +l lv+G+T sGKt ll all e+ + + riv+   p 
  CDO68601.1 715 KLTLVTGPTASGKTALLLALLGELTTLEGRIVMSKNPS 752
                 5679***************************9876665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00034
       T2SSE  122 lrkavrerglilvsGgTgsGKttllyallkeinksderivt 162 
                  ++ +++++  + + G TgsGK+tl+ +ll +++ +  ri++
  CDO68601.1 1377 ISFSLKAKERVGLIGRTGSGKSTLAMSLLRFVDPTGGRIII 1417
                  55566667777778*******************99999875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   1.1e+03     163     185 ..     600     622 ..     595     626 .. 0.87
   2 ?    4.3   0.0     0.026        23     135     174 ..     780     856 ..     700     886 .. 0.48
   3 ?    2.1   0.0      0.12   1.1e+02      27      44 ..    1387    1404 ..    1377    1409 .. 0.80
   4 !   13.1   0.1   5.2e-05     0.047     134     209 ..    1526    1597 ..    1506    1604 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
                 EECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 163 llDeidaaLDeknvkkvaellke 185
                  lD i+a LDe++v + ++ lk+
  CDO68601.1 600 ALDRIAAFLDEEEVDEQVSTLKK 622
                 69************998888876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.026
                 T.........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HH CS
                 x.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDek 174
                 +                                         +LSgG+k+ vala       + p+  +llD+  +a D +
  CDO68601.1 780 NilfgypydeerynavveccalkpdleifedgdateigargiSLSGGQKARVALA----RAVYAPTKYVLLDDPLSAVDSH 856
                 2333333333333333333333333333333555555555556677777665554....3345666666666666666655 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.12
                  EEEEESTTSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N   27 taivGpNGSGKsnlldAi 44  
                    ++G+ GSGKs l  ++
  CDO68601.1 1387 VGLIGRTGSGKSTLAMSL 1404
                  5689********998775 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 5.2e-05
                  TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209 
                   +++S G+++L+a+a        +++++ +lDe  + +D++  +k+  +++e   ++ ++ +++r +++ + d+l+
  CDO68601.1 1526 GTNFSHGQRQLIAMARA----LLRRSAIIILDEATSSIDFATDAKIQAIIREGFGDSLLLTVAHRLRTIIDYDRLL 1597
                  5589********98754....58999***************************************99998888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   5.3e-05     0.047      29      59 ..     710     740 ..     704     753 .. 0.87
   2 !   10.2   0.0   0.00044       0.4      29      57 ..    1380    1408 ..    1353    1416 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-05
      AAA_25  29 llpagelallaGapgtGKttlaldlalavat 59 
                 + p+g+l+l++G++++GKt+l+l l  +++t
  CDO68601.1 710 MFPEGKLTLVTGPTASGKTALLLALLGELTT 740
                 579*********************9988774 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00044
      AAA_25   29 llpagelallaGapgtGKttlaldlalav 57  
                   l a+e + l+G++g+GK+tla++l   v
  CDO68601.1 1380 SLKAKERVGLIGRTGSGKSTLAMSLLRFV 1408
                  468899999***************98776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00018      0.16      16      42 ..     708     734 ..     700     741 .. 0.78
   2 !   11.5   0.1   0.00021      0.19      16      38 ..    1378    1400 ..    1373    1410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      AAA_29  16 tieidlkg.atlltGpsGsGKSTllDAi 42 
                 t+++  +g  tl+tGp+ sGK++ll A+
  CDO68601.1 708 TVMFP-EGkLTLVTGPTASGKTALLLAL 734
                 45554.5669**************9655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00021
      AAA_29   16 tieidlkgatlltGpsGsGKSTl 38  
                  +++++ k+ + l+G++GsGKSTl
  CDO68601.1 1378 SFSLKAKERVGLIGRTGSGKSTL 1400
                  566666677889**********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00019      0.17      23      59 ..     713     750 ..     704     779 .. 0.74
   2 !   10.4   0.3   0.00071      0.64      27     145 ..    1387    1556 ..    1370    1583 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdg.giflrgk 59 
                 ++ l+l++G+ ++GK++l+ +ll +l++ +  i+++ +
  CDO68601.1 713 EGKLTLVTGPTASGKTALLLALLGELTTLEgRIVMSKN 750
                 45899**************9999888876524444444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00071
      AAA_16   27 vllsGesGvGKsslvrellralekd.....................ggiflrgkcdqlesa....................ipysalaqalareell 82  
                  v l+G  G+GKs+l+ +llr +  +                     ++if+ ++++ + s+                    +++++l++   +   l
  CDO68601.1 1387 VGLIGRTGSGKSTLAMSLLRFVDPTggriiidgidittiglhdlrsRIIFIPQDATLF-SGtlrdnldpfgehtdvecldvLHRVQLTSPD-NQLAL 1481
                  6699***************988888776777777666666666666455555555555.22122223222222222222211111222222.11112 PP

      AAA_16   83 rqlldeaesaeleawrekleeala......................avpelagaea..............srllellkrll.allsrderplvlvlD 142 
                  + l  ea                +                      +      +++              s+  ++l +++ all+r +   +++lD
  CDO68601.1 1482 KRLSGEA----------------SeaasihdpergaatstsateidS------KSEitldtqvsvggtnfSHGQRQLIAMArALLRR-S--AIIILD 1553
                  2222222................022222222222333343333331......2224444556666655566666666666333333.2..578887 PP

      AAA_16  143 dlq 145 
                  ++ 
  CDO68601.1 1554 EAT 1556
                  765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.2    0.0009      0.81       1      20 [.     716     735 ..     716     757 .. 0.84
   2 ?    2.9   0.0     0.088        78     206     301 ..     767     885 ..     748     887 .. 0.74
   3 !    6.4   0.6    0.0076       6.8       3      25 ..    1388    1408 ..    1387    1577 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0009
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 l++++Gp +sGK+ LL al 
  CDO68601.1 716 LTLVTGPTASGKTALLLALL 735
                 699***************94 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.088
      AAA_21 206 eeliasvderlrer.......................gvvflengdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll 279
                  +++++++  ++++                       ++ ++e+gd  e+ ar +  S G+k   al+ a+++     + +l+D+p +  + +  r l+
  CDO68601.1 767 AQSPWLRHQSIKDNilfgypydeerynavveccalkpDLEIFEDGDATEIGARGIslSGGQKARVALARAVYAPT---KYVLLDDPLSAVDSHTSRFLV 862
                 555555555555556666667777777777788888888899999999999999988888888877777777644...66******************* PP

      AAA_21 280 .ell..kelsrngaQviltTHSpll 301
                  +l+   +l   g  vil+TH   l
  CDO68601.1 863 dRLFsgPLL--SGRTVILVTHHVGL 885
                 666663333..479*******8665 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0076
      AAA_21    3 vliGpNgsGKSnLLdaldllarl 25  
                  +liG+ gsGKS+L   l  l+++
  CDO68601.1 1388 GLIGRTGSGKSTLAMSL--LRFV 1408
                  68999999999996666..3332 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.4e-05     0.031      11      39 ..     705     734 ..     694     757 .. 0.85
   2 ?    5.0   0.0     0.035        32      24      36 ..    1389    1401 ..    1377    1406 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-05
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildAi 39 
                 +d ++ F + +ltl+tGp+ +GKT++l A+
  CDO68601.1 705 KDITVMFpEGKLTLVTGPTASGKTALLLAL 734
                 56667778889***************9887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.035
      AAA_23   24 ItGpNGaGKTTil 36  
                  ++G +G+GK+T+ 
  CDO68601.1 1389 LIGRTGSGKSTLA 1401
                  68*********97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0065       5.8       6      29 ..     715     738 ..     712     765 .. 0.85
   2 !    6.9   0.0     0.008       7.2      10      29 ..    1389    1408 ..    1384    1463 .. 0.91
   3 ?    0.8   0.0       0.6   5.3e+02      76     102 ..    1534    1557 ..    1477    1590 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0065
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++++vtG++ +GKT ll  ll +l
  CDO68601.1 715 KLTLVTGPTASGKTALLLALLGEL 738
                 789**************9998877 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.008
      AAA_22   10 vtGesGtGKTtllrrlleql 29  
                  ++G +G+GK+tl+  ll+  
  CDO68601.1 1389 LIGRTGSGKSTLAMSLLRFV 1408
                  79***********9998865 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.6
      AAA_22   76 eellealeqalraravielliiDEaqh 102 
                  ++l+ a+++al +r++  ++i+DEa  
  CDO68601.1 1534 RQLI-AMARALLRRSA--IIILDEATS 1557
                  4444.45555555555..7*****965 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.012        11      29      58 ..     710     739 ..     707     754 .. 0.83
   2 !    8.3   0.0    0.0017       1.6      29      58 ..    1380    1409 ..    1371    1417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkld 58 
                 ++ ++k +l++Gpt +GKt+++  ll +l 
  CDO68601.1 710 MFPEGKLTLVTGPTASGKTALLLALLGELT 739
                 56678999*************999988876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0017
       AAA_7   29 llknkkpvllvGptGtGKtviikdllkkld 58  
                   lk+k  v l+G tG+GK++++++ll+ +d
  CDO68601.1 1380 SLKAKERVGLIGRTGSGKSTLAMSLLRFVD 1409
                  6889999*****************999777 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   4.3e-05     0.039      23      58 ..    1384    1417 ..    1376    1419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-05
       DUF87   23 trHlAilgsTGsGKSntvavLleellekkgatilil 58  
                  +++++ +g+TGsGKS+++ +Ll+  + ++ +  +i+
  CDO68601.1 1384 KERVGLIGRTGSGKSTLAMSLLR-FV-DPTGGRIII 1417
                  57899****************97.44.444444444 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.22     2e+02      17      47 ..     716     746 ..     711     750 .. 0.85
   2 ?   11.4   0.1   0.00012      0.11      15      50 ..    1384    1418 ..    1373    1442 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.22
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargdrai 47 
                     +l++G t sGKt  l +ll ++   + r++
     CDO68601.1 716 LTLVTGPTASGKTALLLALLGELTTLEGRIV 746
                    5899****************99887777766 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00012
  TrwB_AAD_bind   15 tqhilivGttGsGKtqalekllrairargdraivlD 50  
                     ++ + ++G tGsGK++ + +llr +   g r+i+ D
     CDO68601.1 1384 KERVGLIGRTGSGKSTLAMSLLRFVDPTGGRIII-D 1418
                     456899*************************887.3 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.3   3.8e+03      17      42 ..     470     496 ..     469     505 .. 0.75
   2 ?    1.3   0.1       0.4   3.5e+02       4      22 ..     719     737 ..     717     756 .. 0.80
   3 ?   10.9   0.0    0.0004      0.36       1      21 [.    1386    1406 ..    1386    1434 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.3
                 HHHHTS.TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  17 naltge.kaivsdkpgtTrdinegrvk 42 
                 n+ + +  ++v++   tTrd + g ++
  CDO68601.1 470 NSFITQrSVRVKKGLSTTRDKRMGVLN 496
                 555554278***********9999876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.4
                 EEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   4 ivGrpNvGKStLinaltge 22 
                 + G + +GK+ L+ al+ge
  CDO68601.1 719 VTGPTASGKTALLLALLGE 737
                 789**************97 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.0004
                  EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg 21  
                  +v+++Gr+ +GKStL  +l++
  CDO68601.1 1386 RVGLIGRTGSGKSTLAMSLLR 1406
                  69**************99986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.043        39       1      24 [.     716     739 ..     716     776 .. 0.85
   2 ?    7.3   0.0    0.0055       4.9       4      21 ..    1389    1406 ..    1387    1418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.043
      AAA_33   1 lvllvGlpGsGKstlaerllkklg 24 
                 l+l+ G+ +sGK+ l+  ll +l+
  CDO68601.1 716 LTLVTGPTASGKTALLLALLGELT 739
                 67899***********99999987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0055
      AAA_33    4 lvGlpGsGKstlaerllk 21  
                  l+G  GsGKstla +ll+
  CDO68601.1 1389 LIGRTGSGKSTLAMSLLR 1406
                  7899**********9985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0013       1.2       4      23 ..    1389    1408 ..    1386    1417 .. 0.87
   2 ?   -2.5   0.0         5   4.5e+03      49      75 ..    1526    1556 ..    1512    1559 .. 0.66
   3 ?    1.3   0.0      0.34   3.1e+02      81     117 ..    1583    1614 ..    1577    1630 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
                  EE--SSSSHHHHHHHGGGGB CS
       AAA_5    4 LvGppGtgKselaerlaaal 23  
                  L+G +G+gKs+la++l++++
  CDO68601.1 1389 LIGRTGSGKSTLAMSLLRFV 1408
                  9***************9876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
                  ........--------....G-SEEEEESGG CS
       AAA_5   49 ngttslvdsplvraar....egeilvlDEve 75  
                  + + s+ +  l   ar    +++i++lDE +
  CDO68601.1 1526 GTNFSHGQRQLIAMARallrRSAIIILDEAT 1556
                  4455555566665555777899******976 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.34
                  HHHHHHHHHHSSEEE..-SSSEEE---......-EEE CS
       AAA_5   81 vlnsLlslleerrllleeggelvkaknddllerfrvi 117 
                  v+ +L ++++ +rll+ + gel  ++ +     f++i
  CDO68601.1 1583 VAHRLRTIIDYDRLLVLDKGELAEFDTP-----FNLI 1614
                  7889*******************99998.....5544 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0042       3.7       2      41 ..     718     757 ..     717     795 .. 0.85
   2 ?    3.7   0.1     0.065        59       1      20 [.    1387    1406 ..    1387    1417 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
                 EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEEC CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlg 41 
                 +v G + sGK+++l aLlge     g ++++ +p ++ ++
  CDO68601.1 718 LVTGPTASGKTALLLALLGELTTLEGRIVMSKNPSKVDKD 757
                 599*******************************999874 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.065
                  EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlg 20  
                  + ++G + sGKS+++ +Ll+
  CDO68601.1 1387 VGLIGRTGSGKSTLAMSLLR 1406
                  6799***********99986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.011       9.4      17      45 ..     715     743 ..     700     758 .. 0.81
   2 ?    4.4   0.0     0.022        20      21      51 ..    1389    1419 ..    1380    1424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgn 45 
                 kl l+ G +++GK++l+ +l  el++ ++
  CDO68601.1 715 KLTLVTGPTASGKTALLLALLGELTTLEG 743
                 7899*****************99984443 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.022
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrldp 51  
                  l G +G+GKs+la  l + ++++g+ + +d+
  CDO68601.1 1389 LIGRTGSGKSTLAMSLLRFVDPTGGRIIIDG 1419
                  5699*************99999999888886 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0013       1.2       7      52 ..     703     746 ..     699     798 .. 0.79
   2 ?   -1.8   0.0       2.6   2.3e+03     163     208 ..     879     926 ..     841     939 .. 0.71
   3 ?   -2.2   0.0       3.4   3.1e+03      27      39 ..    1391    1403 ..    1385    1407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
    ATPase_2   7 elkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyvi 52 
                 elk++  +  +   +  +++Gp  sGKtaLl  ++ +l  ++ +++
  CDO68601.1 703 ELKDITVMFPE--GKLTLVTGPTASGKTALLLALLGELTTLEGRIV 746
                 56666666655..56789*************999988877766555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
    ATPase_2 163 clsSeglfie.rvyneselegrhky.ilvddldketalnflkegfkel 208
                 ++   gl++    y   +l gr ++  +v+ l+k ++l+++ eg+   
  CDO68601.1 879 VTHHVGLVLPvAHYVVRMLDGRIDTqGTVEELRKRNVLEMPAEGSAAK 926
                 455555555533455668999999989999**********99997665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.4
    ATPase_2   27 GpegsGKtaLlke 39  
                  G+ gsGK++L + 
  CDO68601.1 1391 GRTGSGKSTLAMS 1403
                  99*******9876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.088        79      90     128 ..     704     743 ..     684     753 .. 0.80
   2 ?    6.2   0.0    0.0099       8.9      93     120 ..    1377    1405 ..    1361    1415 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.088
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  l++++ ++ + k++++ G++  GK++L+ all+el++  g
   CDO68601.1 704 LKDITVMFPEgKLTLVTGPTASGKTALLLALLGELTTLEG 743
                  556666665559********************99776555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0099
                   HHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase   93 lkellkd.ktsvlvGqSGvGKStLinall 120 
                   ++  lk  + + l+G +G GKStL  +ll
   CDO68601.1 1377 ISFSLKAkERVGLIGRTGSGKSTLAMSLL 1405
                   566676646777************88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.51
# Mc/sec: 9796.84
//
Query:       CDO68602.1  [L=319]
Description: hypothetical protein BN946_scf184996.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00024   21.1  15.8    0.00098   19.2   2.1    2.7  3  bZIP_2          Basic region leucine zipper
    0.00028   20.9  12.1     0.0018   18.3   2.6    2.3  2  bZIP_1          bZIP transcription factor
     0.0009   20.0   3.9     0.0009   20.0   3.9    2.1  2  NAM-associated  No apical meristem-associated C-terminal doma
     0.0068   16.0   1.7      0.022   14.3   1.7    1.9  1  CSTF_C          Transcription termination and cleavage factor
  ------ inclusion threshold ------
      0.031   13.8   0.5      0.047   13.3   0.5    1.2  1  TMCO5           TMCO5 family
       0.06   13.2   0.1       0.12   12.2   0.1    1.5  1  MerR_2          MerR HTH family regulatory protein
       0.27   11.4   4.2       0.49   10.6   4.0    1.5  1  Cnn_1N          Centrosomin N-terminal motif 1
       0.34   10.8   4.7       0.77    9.7   4.7    1.5  1  SIKE            SIKE family
       0.83   10.1   5.0       0.35   11.3   2.2    1.8  2  Fungal_TACC     Fungal Transforming acidic coiled-coil (TACC)
          2    8.3  10.5          4    7.4  10.5    1.5  1  PKcGMP_CC       Coiled-coil N-terminus of cGMP-dependent prot
          4    7.2   6.0         18    5.0   1.1    2.1  2  Phage_Nu1       Phage DNA packaging protein Nu1


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   2.1     6e-07   0.00098       3      39 ..      23      59 ..      22      70 .. 0.89
   2 !    7.5   5.1    0.0027       4.4      32      53 ..      76      97 ..      75     104 .. 0.89
   3 ?   -1.3   0.1       1.5   2.4e+03      36      45 ..      98     107 ..      96     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6e-07
                XXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  3 deyrerRrkNreAarrsRekkkakeeeleervkeLee 39
                +++r +R +N  A +r R k+ka+ e+le++v +L++
  CDO68602.1 23 QQDRPERSRNAKAQARHRAKRKAYIEQLEQTVTKLQS 59
                567889****************************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0027
                HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 32 ervkeLeeeNaqLrqkveqLek 53
                +r+ eLe+eN+ L+++ve+L++
  CDO68602.1 76 QRIRELEQENEILHREVEELRR 97
                6899999999999999999987 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.5
                 HHHHHHHHHH CS
      bZIP_2  36 eLeeeNaqLr 45 
                 +Le +NaqLr
  CDO68602.1  98 QLELKNAQLR 107
                 6899999997 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.6   1.1e-06    0.0018      11      39 ..      30      58 ..      25      61 .. 0.93
   2 !    7.6   2.1    0.0025       4.1      33      60 ..      76     102 ..      75     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
                --HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 11 qkNReaArrsRqRKqaeieeLerrvkaLe 39
                 +N  a++r R +++a+ie+Le+ v +L+
  CDO68602.1 30 SRNAKAQARHRAKRKAYIEQLEQTVTKLQ 58
                6999*********************9997 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  33 rrvkaLekeNksLkseleelkkevekLk 60 
                 +r  +Le+eN+ L  e+eel+ + e Lk
  CDO68602.1  76 QRIRELEQENEILHREVEELRRQLE-LK 102
                 6888999999999999999999887.55 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   3.9   5.5e-07    0.0009      60     153 ..       9     120 ..       2     132 .. 0.85
   2 ?   -0.5   2.2       1.1   1.7e+03      44      64 ..     233     254 ..     221     272 .. 0.45

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.5e-07
  NAM-associated  60 seesaadsestsssrlkRPiGkkkaKekrkeaskdeealeklasaqkkiakkskekkee.ae.........leekkldieeekveaeqrqaeee. 143
                     se +  +s++   s++ RP+  ++aK ++++ +k ++ +e+l++  +k++++ +   e+ a+         + e++++i  ++ve ++rq+e + 
      CDO68602.1   9 SESHRDSSSDHPPSQQDRPERSRNAKAQARHRAKRKAYIEQLEQTVTKLQSVLALTPEQvAAippplqrirELEQENEILHREVEELRRQLELKn 103
                     3334445556666789**************99999*****************999999966699******977779****************999 PP

  NAM-associated 144 .......ImskDlsgld 153
                            Im+ D s++ 
      CDO68602.1 104 aqlrpadIMRRDSSSFA 120
                     ************99876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
  NAM-associated  44 sestdee.dssesssesseesa 64 
                     +++++++ +s++sss+ ++ s+
      CDO68602.1 233 TQQPPPSaSSASSSSPHQQRSN 254
                     2222222222222222222222 PP

>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.7   1.4e-05     0.022       9      29 ..      57      77 ..      51      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
      CSTF_C  9 lqQVLqLseeqIaaLPpdqRr 29
                lq+VL+L++eq aa Pp  +r
  CDO68602.1 57 LQSVLALTPEQVAAIPPPLQR 77
                8**************986544 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   2.9e-05     0.047      66      99 ..      47     104 ..      16     120 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
       TMCO5  66 lkeLele........................taklekkneiLlkevveLqkkisrkes 99 
                   +Le+                            le++neiL +ev eL+++++ k+ 
  CDO68602.1  47 IEQLEQTvtklqsvlaltpeqvaaippplqrIRELEQENEILHREVEELRRQLELKNA 104
                 22244445555555777777888888888878899******************98874 PP

>> MerR_2  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.4e-05      0.12      47      84 .]      53      90 ..      40      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.4e-05
      MerR_2 47 kavRLqrDLeinleGiavildLLdrieqLqrelesLrn 84
                ++++Lq+ L++ +e +a+i   L+ri++L++e+e L +
  CDO68602.1 53 TVTKLQSVLALTPEQVAAIPPPLQRIRELEQENEILHR 90
                5789******************************9975 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.0    0.0003      0.49      25      69 ..      49     109 ..      44     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
      Cnn_1N  25 fLeerleklse................eqkeellkenielkveveslqkelkekkkllrea 69 
                  Le+ ++kl++                + ++el++en  l+ eve+l+++l+ k+ +lr a
  CDO68602.1  49 QLEQTVTKLQSvlaltpeqvaaippplQRIRELEQENEILHREVEELRRQLELKNAQLRPA 109
                 45555555555555555566666669999************************99999865 PP

>> SIKE  SIKE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.7   0.00047      0.77      44      98 ..      49     101 ..      32     107 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00047
        SIKE  44 qyqeevkelneiakekprseLiagiqqenrqireLqqENreLrasleehqsaLel 98 
                 q+++ v++l+ +    p  e +a+i    ++ireL+qEN+ L+  +ee ++ Lel
  CDO68602.1  49 QLEQTVTKLQSVLALTP--EQVAAIPPPLQRIRELEQENEILHREVEELRRQLEL 101
                 45555666666666554..45778889999*********************9997 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8   6.2e+03      48      57 ..      48      57 ..      35      64 .. 0.54
   2 ?   11.3   2.2   0.00021      0.35      39      65 ..      77     103 ..      75     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
  Fungal_TACC 48 kslkqeieqL 57
                 ++l+q +++L
   CDO68602.1 48 EQLEQTVTKL 57
                 2333333333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00021
  Fungal_TACC  39 kldklelenkslkqeieqLkkqleaer 65 
                  ++++le+en+ l++e+e+L++qle+++
   CDO68602.1  77 RIRELEQENEILHREVEELRRQLELKN 103
                  7899********************987 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.5    0.0025         4       9      31 ..      77      99 ..      76     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0025
   PKcGMP_CC  9 RIRELEkrlaekdeEIqELrskL 31
                RIRELE+  +  + E++ELr++L
  CDO68602.1 77 RIRELEQENEILHREVEELRRQL 99
                9*********************9 PP

>> Phage_Nu1  Phage DNA packaging protein Nu1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.1     0.011        18      86     138 ..      29      77 ..       8      83 .. 0.76
   2 ?    4.9   0.8     0.012        20      53      74 ..      79     100 ..      77     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
   Phage_Nu1  86 rrrlikaqadaqelknaeakkevvelelvtkvlarvaaeiaailstiPlllqr 138
                 r r    +a+aq  + a++k+ + +le+    l+ v a     + +iP  lqr
  CDO68602.1  29 RSR----NAKAQARHRAKRKAYIEQLEQTVTKLQSVLALTPEQVAAIPPPLQR 77 
                 333....3445556899***********9999999999999999999987776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
   Phage_Nu1  53 rdaeieneklrkeveelraaae 74 
                 r+ e ene l +eveelr   e
  CDO68602.1  79 RELEQENEILHREVEELRRQLE 100
                 567889***********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1603  (0.0894082); expected 358.6 (0.02)
Passed bias filter:                      866  (0.0483016); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2069.95
//
Query:       CDO68603.1  [L=584]
Description: hypothetical protein BN946_scf184996.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   70.8   0.1    2.4e-19   69.7   0.0    1.5  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.4e-23   2.4e-19      53     238 ..     239     440 ..     221     508 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.4e-23
                 ......................H-S-EEEE-S-...-SHHHHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHH.HTT--EEEEEE-SHHHH CS
     TAL_FSA  53 kvkeaydkLavedilealdllgadgrvslEVdarlsddteatieeArrlialye.....renvlIKiPateeGikAikeLk.keGinvnvTliFsleqa 145
                   k+a+++  ve ++ +ld +  +g+  + Vd+rl+d+  a+ + A +l++l+      r+++++ iPate+G++A+++++ k  +++n+Tl+  +++a
  CDO68603.1 239 ILKAALQHYLVELGASMLDRV--EGPHYTFVDPRLHDNPGAMAKYAMKLVKLFAekgygRDRIVVTIPATEAGVQAARTIErKYHVQTNLTLVSGMHHA 335
                 467899999************..******************************99**************************5569************** PP

                 HHHHHHT-SEEEEBHHHHHTTT.......................S-HHHHHHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEE..EE-HHHHHH CS
     TAL_FSA 146 laaaeagasviSpFvgRiddll.kkleek..........dklkgkddgvalvkeiynyykklgysTkvmaasfrnveeveelagcdtv..Tippkllea 231
                   +aea+a++i + +  + d++ +kl+              +  k+ + + +    + ++ +++   v+ a+++n+  +eel   d+v  T+  +l + 
  CDO68603.1 336 AVCAEAEATYITFCYQELSDAYgRKLSTGnsffkaweamL-TPPKRLAGEAIDATTTFFNLHEIPSRVLVANLQNASDAEELGEIDAVafTAEQSLRAR 433
                 **********************877766679998877642.3334467777777777777777999**********99999998888877776666665 PP

                 HT--HHH CS
     TAL_FSA 232 lakhgkt 238
                   + + t
  CDO68603.1 434 APALEVT 440
                 5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3925.24
//
Query:       CDO68604.1  [L=282]
Description: hypothetical protein BN946_scf184996.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-19   68.8   0.0    6.3e-19   67.8   0.0    1.5  1  Hydrolase_like   HAD-hyrolase-like
    4.7e-15   55.5   0.6    1.6e-08   34.5   0.1    2.7  3  Hydrolase_6      Haloacid dehalogenase-like hydrolase
    2.2e-10   41.2   0.0    6.3e-10   39.7   0.0    1.7  1  Hydrolase        haloacid dehalogenase-like hydrolase
    2.5e-05   24.5   0.0    0.00062   19.9   0.0    2.4  2  HAD_2            Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.071   12.7   0.0       0.13   11.9   0.0    1.4  1  PGP_phosphatase  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   1.8e-22   6.3e-19       2      74 ..     201     276 ..     200     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.8e-22
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHH...HHT---SEEES CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepeh...kptyvaddlae 74 
                     +gKP  +m+d ++++++ dp++++m+GDrl+tDi+++++ G++++LVltG+t++ + + p++    p+yv +++ +
      CDO68604.1 201 IGKPKGTMLDCIRAKHDFDPKRTIMVGDRLNTDIEFGKAGGLSTLLVLTGITKENEISGPNAsptVPDYVTNSIGD 276
                     6*****************************************************9999866522267777777766 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   4.6e-12   1.6e-08       1      30 [.      21      50 ..      21      61 .. 0.93
   2 !   18.8   0.0   3.6e-07    0.0013      59     101 .]      62     107 ..      51     107 .. 0.82
   3 ?   -2.5   0.0       1.6   5.8e+03      21      41 ..     151     171 ..     146     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.6e-12
                 EEEESTTTSEETTEE-TTHHHHHHHHHHTT CS
  Hydrolase_6  1 flfDidGvLwrgdkaipgaaealnalraag 30
                 +lfD+dGvLw+gdk+i+ga e+l+ lr ++
   CDO68604.1 21 WLFDCDGVLWQGDKLIEGATEVLQLLRHHN 50
                 69*************************986 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.6e-07
                  -GGGEEEHHHHHHHHHHHH...SXXXEEEEESXHHHHHHHHHTTXE CS
  Hydrolase_6  59 teeqvvtsataaaeylkkr...kadkkvlvigeeglreelkeagfk 101
                  ++++++ sa a a y+++     +dkkv+vig  gl+eel+e g++
   CDO68604.1  62 DQDEIFGSAFASAVYISSVmkmPKDKKVYVIGMAGLEEELREEGIQ 107
                  567888888888888877433388*******************985 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.6
                  HHHHHHHHTT-EEEEEE---S CS
  Hydrolase_6  21 ealnalraagkpvvllTNnss 41 
                  +a+n++ +++   +l+TN+ s
   CDO68604.1 151 KAFNYILRNEGCAFLVTNEDS 171
                  566666666666788999755 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.8e-13   6.3e-10       2     210 .]      19     241 ..      18     241 .. 0.66

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.8e-13
                 SEEEEESBTTTBCHHHHHHHHHHHH.......CHHHHHHHHHHHHCHHHHHHHHHHHHH............HHHHHHHHHETTTE.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx.............. RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa.......alalaaaletgsehpigkalvaaakar............sgaltgfatfigrg.............. 67 
                 +t +fD+dG+L++g + +e +++ +       +                         +            ++  + fa                    
  CDO68604.1  19 DTWLFDCDGVLWQGDKLIEGATEVLqllrhhnE-------------------------LrdrttmrlmdqdEIFGSAFAS----Avyissvmkmpkdkk 88 
                 7889***********777777777722222221.........................1111222222221111233333....022333332222223 PP

                 HHHHTHHHHHHHH.....HCHHHHHHHHHHHHHHCHHHHHH...................TTHHHHHHHHHHTHHBHTTHHHHHHH.HHHTTEEEEEEE CS
                 xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
   Hydrolase  68 ayaigkpewltal.....dippdlgaaigsaqsqgrtvall...................qaralavftiadplkvkpeaaeavas.Lkaagievvllt 141
                 +y ig   + ++l      +                                        +  + av+   d+   + ++ +a+++ L+  g+  +l+t
  CDO68604.1  89 VYVIGMAGLEEELreegiQYI-------------------GgtdpedntlasfslanwtpDPAVGAVLCGLDTSINYTKLSKAFNYiLRNEGC-AFLVT 167
                 455555544444411122222...................1233344455555677777799999****************8888868888**.99999 PP

                 SSEH..HHHHHHHHHTT..GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxx..xxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 142 gdnp..etaeraanqlG..ddyf.daviasdietvakpspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                 + ++   tae ++  +G    +     +++d  +++kp+  ++  +  +   +p++++mVGD++n D+++++a g
  CDO68604.1 168 NEDStyPTAEGLLPGAGsiS-APlRYALGRDPIAIGKPKGTMLDCIRAKHDFDPKRTIMVGDRLNtDIEFGKAGG 241
                 988866777777777**944.4448889999999**************************************976 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.05   1.8e+02       2      23 ..      22      43 ..      21     110 .. 0.64
   2 !   19.9   0.0   1.7e-07   0.00062     126     178 .]     194     247 ..     184     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.05
       HAD_2  2 iFDlDgTlldteeliiqafnel 23
                +FD Dg+l    +li  a++ l
  CDO68604.1 22 LFDCDGVLWQGDKLIEGATEVL 43
                7999999988888877666533 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.7e-07
       HAD_2 126 vtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikviav 178
                 ++ + +   KP+ +++  +  k +++++++i+vGD   tDie +k+ g+ ++ v
  CDO68604.1 194 LGRDPIAIGKPKGTMLDCIRAKHDFDPKRTIMVGDRLnTDIEFGKAGGLSTLLV 247
                 678888899****************************9********99998765 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.13     135     162 ..     219     246 ..     207     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
  PGP_phosphatase 135 eadeiavvgDRllTdvllanmmGslgvw 162
                      +++  ++vgDRl Td+ +++  G  + +
       CDO68604.1 219 DPKRTIMVGDRLNTDIEFGKAGGLSTLL 246
                      68899**************998855544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1823.06
//
Query:       CDO68605.1  [L=113]
Description: hypothetical protein BN946_scf184996.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-44  149.4   2.5    3.7e-44  148.9   2.5    1.2  1  Ribosomal_L34e  Ribosomal protein L34e
  ------ inclusion threshold ------
      0.062   13.2   4.1        2.3    8.2   0.4    2.5  2  FhuF_C          FhuF 2Fe-2S C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L34e  Ribosomal protein L34e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   2.5   4.2e-48   3.7e-44       1      94 []       1      94 [.       1      94 [. 1.00

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 4.2e-48
  Ribosomal_L34e  1 MvqrltyrrrlsYntrsnkvrvvktpggklvyqykkkkgkapkCgdckkkLqGipalrpkelsrlsktkktvsRaYGgslcakcvkerivrafl 94
                    M+qr+t+r+r+ Ynt+sn++r+vktpggklvy+++kk ++apkCgdc+ +L Gipalrp++++++sktkktv RaYGgs+c+ cvk+ri+rafl
      CDO68605.1  1 MAQRVTLRKRTPYNTTSNRRRIVKTPGGKLVYHHIKKLASAPKCGDCGIALPGIPALRPRQYATISKTKKTVRRAYGGSRCGDCVKSRILRAFL 94
                    9********************************************************************************************8 PP

>> FhuF_C  FhuF 2Fe-2S C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0013        11       9      19 ..      37      47 ..      37      47 .. 0.88
   2 ?    8.2   0.4   0.00026       2.3      12      21 .]      77      86 ..      74      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0013
      FhuF_C  9 rlpggeyCgsC 19
                +l+ +++Cg+C
  CDO68605.1 37 KLASAPKCGDC 47
                578899***** PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00026
      FhuF_C 12 ggeyCgsCPL 21
                gg +Cg+C++
  CDO68605.1 77 GGSRCGDCVK 86
                7899****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 794.17
//
Query:       CDO68606.1  [L=442]
Description: hypothetical protein BN946_scf184996.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-76  258.5  30.5    3.1e-74  250.8  24.7    2.5  2  Nop53           Nop53 (60S ribosomal biogenesis)
    9.6e-07   29.0   0.8    9.6e-07   29.0   0.8    1.8  2  BOP1NT          BOP1NT (NUC169) domain


Domain annotation for each model (and alignments):
>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.8  24.7   3.4e-78   3.1e-74       1     398 []      41     406 ..      41     406 .. 0.83
   2 ?   -3.3   0.3      0.49   4.4e+03     274     288 ..     415     429 ..     410     436 .. 0.69

  Alignments for each domain:
  == domain 1  score: 250.8 bits;  conditional E-value: 3.4e-78
       Nop53   1 SRkgKkaWRKniDitdveegLeevreeeritGgvlsekkdeeLFvvDtkgdeelkkkarkkkkkpLksdeiLaqrsavpa.vsakrkrkka........ 90 
                 SRkgK+aWRKn+Di+ vee+Le +r eer+                       l    +k +++ L+s++iL++rsavpa +s++     a        
  CDO68606.1  41 SRKGKRAWRKNVDIEPVEEALEGLRAEERT-----------------------L----PKFSERVLTSTKILSERSAVPAvFSRPTAA--Asasasaqr 110
                 9************************99992.......................2....3345689*************9944444443..246999987 PP

       Nop53  91 .kkkkkkkvskkelarlrklakrkkkg............ekkkeksakeakkksgsyDlWaeeeeeeeeekkktklstlekkkkvkrPktlkkkpisls 176
                  kk ++  vs+ ++ rl +++kr +kg            e ++  + +ea+kk+g+yD+W+e+               +++k +vk P t  + p+s +
  CDO68606.1 111 eKKRRRGLVSHEDKGRLLRMSKRLRKGpfnayvdpdqvgEGSALLELSEAAKKAGTYDVWSED---------------VPEKVTVKPPPT--ENPRSHI 192
                 444444447**************************99986666777888999********873...............457889999985..55669** PP

       Nop53 177 alpavevphaGkSYNPsfedhqellqkaveaEkkrekeeeklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeeeeeeeeeseeeekln 275
                 alpav  ph+G+SYNP++++hq+ll++a+e+E +++k +e+l++ ++k  +++a   ++e++ ++    g + +   e+ ++e     eee+++e +  
  CDO68606.1 193 ALPAVPSPHEGTSYNPPLTAHQQLLRAAHEKEVQKLKSQEELRELQAKLDRARA-VSTAEQMAAQGVAPGMKVDVPAEAPADE-----EEEEGAEPADP 285
                 ***********************************************9988544.6666665555555444444433332222.....22222223345 PP

       Nop53 276 apvkkkpkrKTkaqRnkekrrkeeekeekeekkekkkeaqlerlkeikkevaekekeraeaaearkkekrkkkaekkklkrrklgkhkvpepdlevqls 374
                  p kk+p rKTk+qR+k++r ++e+++ +e+++ k+++a ++++k+++k++a++ ++r++ +++r+++  ++ + k++l+++++gkh vpe +++vql+
  CDO68606.1 286 LPPKKMPTRKTKQQRKKAERLRAEKRALAEKAARKRMLATVDSAKALRKAIARNLATRERLRAQRQAAL-QE-KLKQGLAGQRIGKHVVPEGEIDVQLG 382
                 5678899**************************************************999865555444.44.489*********************** PP

       Nop53 375 dELsdSLRtLKPeGNLlkDrfksL 398
                 +ELs+SLR LKPeGNL++Drf ++
  CDO68606.1 383 EELSESLRGLKPEGNLFRDRFLNM 406
                 *********************987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.49
       Nop53 274 lnapvkkkpkrKTka 288
                 + ++ +kk++rKTk+
  CDO68606.1 415 HAPNPPKKNRRKTKE 429
                 455666777888875 PP

>> BOP1NT  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.8   1.1e-10   9.6e-07      92     216 ..     107     252 ..      65     257 .. 0.72
   2 ?   -2.5   0.5      0.43   3.9e+03     183     190 ..     308     315 ..     271     351 .. 0.51

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.1e-10
      BOP1NT  92 lseapepkrrfipskweakkvaklvrairkgrikl..............ekkekeeeekvydlWedeeeeeee.....krkkeehipapklklPgheeS 171
                  +++++++rr + s++++ +  ++ +++rkg  +               e +e +++  +yd+W+++  e+ +     +++ ++hi+ p ++ P++  S
  CDO68606.1 107 SAQREKKRRRGLVSHEDKGRLLRMSKRLRKGPFNAyvdpdqvgegsallELSEAAKKAGTYDVWSEDVPEKVTvkpppTENPRSHIALPAVPSPHEGTS 205
                 3344566678899********************99999988888888875556666699*******6555444111113455566************** PP

      BOP1NT 172 YnPp...eeyllteeekkeweeadpedrkknfipqkfeslrkvpaYek 216
                 YnPp   +  ll  + +ke+++ ++ + + + +  k ++ r+v++ e+
  CDO68606.1 206 YNPPltaHQQLLRAAHEKEVQKLKS-QEELRELQAKLDRARAVSTAEQ 252
                 ***9444345555555566654443.3344557788888888876655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.43
      BOP1NT 183 eekkewee 190
                 +ek++++e
  CDO68606.1 308 AEKRALAE 315
                 22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1499  (0.0836076); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2871.68
//
Query:       CDO68607.1  [L=207]
Description: hypothetical protein BN946_scf184996.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-14   54.8   0.0      2e-14   54.3   0.0    1.2  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.1e-18     2e-14       5     141 .]      22     162 ..      19     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.1e-18
                 EEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTT CS
         Usp   5 IlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeed 103
                  l+a    e+ ++Alew l+ + ++g+e+++ + +dp+++++ +          l+   +e++     +   +++ +  v+   g++ ++i ++   + 
  CDO68607.1  22 FLCASSPDESGRQALEWCLDSLVQDGDEVVVFRGVDPDDFAENDHDQYRDDARDLMRHIQEKCV----EYDPDRKLSIIVEYIAGKVTQTIDRLIALYR 116
                 566665667777********99999******************999999999999999999996....569999999999999**************** PP

                 SSEEEEESCCSSTTTTCS........SBHHHHHHHHHTSSEEEEEE CS
         Usp 104 adliVvGsrgrsglsrll........lGSvseyvlrhapcpVlvVr 141
                 +d ++vG+rg++++ ++         +GSvs+y+l h+p+pV+vVr
  CDO68607.1 117 PDSLIVGTRGQRSVMQAWagafgapgVGSVSKYCLSHSPVPVIVVR 162
                 **********8888887778889999*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1518.10
//
Query:       CDO68608.1  [L=142]
Description: hypothetical protein BN946_scf184996.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1844  (0.10285); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 980.54
//
Query:       CDO68609.1  [L=332]
Description: hypothetical protein BN946_scf184996.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-27   96.4   4.1    7.9e-07   29.6   0.0    4.4  4  RCC1      Regulator of chromosome condensation (RCC1) repeat
    5.5e-17   61.1  21.7    1.4e-08   34.3   0.5    5.1  5  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   6.6e-10   5.9e-06       3      50 .]      92     151 ..      92     151 .. 0.90
   2 !   29.6   0.0   8.8e-11   7.9e-07       1      50 []     154     206 ..     154     206 .. 0.93
   3 !   11.9   0.0   3.1e-05      0.27      22      50 .]     235     263 ..     226     263 .. 0.88
   4 !   26.2   0.6   9.9e-10   8.9e-06       2      50 .]     267     320 ..     266     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 6.6e-10
                 EEEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS...........-EEEEEEETTEEEEE CS
        RCC1   3 rVysWGrndyGqLGlgtt.esvlvPtkveglsgn...........rvvkvacGddhtval 50 
                 ++++WG nd  qLG g   e+ ++Pt+ +  ++               ++a+G++h++a+
  CDO68609.1  92 QLFGWGANDSAQLGMGRYsEELSKPTRNQAVEDLiangqfgevgaGLEAIAAGGFHSLAV 151
                 69***************9677799*9998887778889999999**************96 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 8.8e-11
                 TTEEEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt.esvlvPtkveglsgn..rvvkvacGddhtval 50 
                 dG V+s+G+nd+  LG+++   + l P ++++l ++  r+v v++Gd +++al
  CDO68609.1 154 DGAVWSFGSNDDAALGRPSAeGDDLGPGRIQSLVDEgfRAVRVVAGDCFSAAL 206
                 8****************999555577********99**************997 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 3.1e-05
                 -EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1  22 svlvPtkveglsgnrvvkvacGddhtval 50 
                 ++++P +++ l ++r+ ++a G+dh v+l
  CDO68609.1 235 KQPTPIQIPELANERFASIAGGSDHLVLL 263
                 6789********99***********9875 PP

  == domain 4  score: 26.2 bits;  conditional E-value: 9.9e-10
                 TEEEEEE--GGGTTSSSS---E....EEEEE-.GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgttesv....lvPtkv.eglsgnrvvkvacGddhtval 50 
                 G+Vy+ G++d GqLG     ++    ++P kv + ++g+r+  v +G++ ++++
  CDO68609.1 267 GEVYTVGCGDSGQLGYRVPATNpvlgTIPHKVlRVSRGHRALVVGAGGYTSFFV 320
                 9***************777555235566*9996777777************986 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4     0.047   4.2e+02      18      28 ..      91     101 ..      90     103 .. 0.77
   2 !   34.3   0.5   1.6e-12   1.4e-08       3      28 ..     140     165 ..     139     166 .. 0.95
   3 !   19.9   0.3   5.3e-08   0.00048       3      24 ..     195     216 ..     193     221 .. 0.93
   4 !   17.8   0.9   2.4e-07    0.0021       2      30 .]     251     279 ..     250     279 .. 0.97
   5 ?   -0.1   0.0       0.1     9e+02       4      18 ..     310     324 ..     308     325 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.047
      RCC1_2  18 GeVlcWGsNsd 28 
                 + +++WG N++
  CDO68609.1  91 WQLFGWGANDS 101
                 6799***9976 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.6e-12
      RCC1_2   3 svsaGdyHscaLtedGeVlcWGsNsd 28 
                 +++aG++Hs+a++edG+V+++GsN+d
  CDO68609.1 140 AIAAGGFHSLAVSEDGAVWSFGSNDD 165
                 8***********************86 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 5.3e-08
      RCC1_2   3 svsaGdyHscaLtedGeVlcWG 24 
                  v aGd++s aL+e+Ge++ WG
  CDO68609.1 195 RVVAGDCFSAALSESGELRVWG 216
                 699******************* PP

  == domain 4  score: 17.8 bits;  conditional E-value: 2.4e-07
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 +s++ G++H + Lt  GeV++ G+ ++GQ
  CDO68609.1 251 ASIAGGSDHLVLLTVAGEVYTVGCGDSGQ 279
                 79**************************9 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.1
      RCC1_2   4 vsaGdyHscaLtedG 18 
                 v aG+y s++++e G
  CDO68609.1 310 VGAGGYTSFFVDERG 324
                 559*******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2393.82
//
Query:       CDO68610.1  [L=315]
Description: hypothetical protein BN946_scf184996.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2242.26
//
Query:       CDO68611.1  [L=510]
Description: hypothetical protein BN946_scf184996.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-33  113.8  35.1    8.9e-33  113.7  33.9    1.6  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7  33.9     5e-37   8.9e-33       2     352 ..      68     433 ..      67     434 .. 0.82
   2 ?   -1.6   0.0     0.053   9.5e+02     149     182 ..     450     481 ..     445     496 .. 0.68

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 5e-37
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                  l++++s+l+r+++g a  + l+++l++++  ++++lt+y++ ++++  p+  +  +f + r+l    ll+++ ++l+ ++ +++ l+  rv  G++++
  CDO68611.1  68 TLMYLCSFLDRGNIGNAKLQGLTTQLHLTGNKYNIALTMYFIPYCLFECPANMVLKKFRPSRWLPGITLLWGVIMTLMGLVKTYPQLVGTRVCLGVAEA 166
                 6899**************99**************************************988888888888888856666669999************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 +lfp+++++++ w+p+      +gl+ +g+ l+ ++  ll+  ++   g      W+++f+i +++++ ++v+ +++l++ p++ k  +p+e+      
  CDO68611.1 167 GLFPGVVYYLTLWYPRHMIQYRVGLFFGGATLAGAFSGLLAFGISFMSGtagmlgWSWIFIIEGLATVAVGVVSFFFLVDFPHTAKFLTPEERAyivhr 265
                 *****************99999999999999999888888876664444567777*****************888888777777777777777788888 PP

       MFS_1 189 ........kgtgpaplvpawkallkdpvlw..illialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrr 276
                            ++++++ +w+all  + +w  il ++++++   ++g++ +lp++    +g+s    +++     +++++ i  l+++ +sdr+++r++
  CDO68611.1 266 kkydnssvGEEEHFEIRHIWEALLDWQ-VWvhILTYMSIIT--PLYGISLFLPSI-INGFGYStPISQLL--TVPPYVFATITLLIWAIWSDRIKKRFP 358
                 777777665566666666888887766.6655555555555..7888*******7.*******6334444..7777777777799***********999 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  +la+l ++l+ +++ +  vt   + +   ++++  +++ + + ++ l ++la+  ++g  ++l   +g+++ga++
  CDO68611.1 359 FILAGLTFILVGFAINISDVT-IGAKYFGTFLVVAGAYAGFPGVVAWLGNNLAGHYKRGVGMALHIGIGNFAGAIA 433
                 999999999999999999999.444444444444446666677777777777799*****************9998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.053
       MFS_1 149 gWravfyilaivsllafvlfllllpeepperkrk 182
                 g +++f+ ++++++ + vl  ++ + ++++ + +
  CDO68611.1 450 GIELMFVGIGFITVPLTVL--AYKRINARRDALV 481
                 6777888888888888886..5555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3625.27
//
Query:       CDO68612.1  [L=956]
Description: hypothetical protein BN946_scf184996.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-06   25.9   0.0    1.6e-05   25.1   0.0    1.4  1  FHA           FHA domain
     0.0011   19.2   0.0     0.0028   17.9   0.0    1.6  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.8e-09   1.6e-05       2      68 ..      35     105 ..      34     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.8e-09
                 EEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEEST.......TSEEEE-TTEEEEE CS
         FHA   2 tiGRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigk.......gepveLksgdviel 68 
                 tiGR+++c+++l  p +S  Ha i+f +   k +l+ lg +nG  +++ ++ +        ++v+L++++vie+
  CDO68612.1  35 TIGRDQSCSLRLYYPAVSALHAKITFVER--KAFLVVLG-TNGLLLDDAPLFPaaasapgPTTVPLQNNSVIEI 105
                 8**************************99..99999999.********88888888888778999999999987 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.1e-07    0.0028      11      67 ..      26      81 ..      24     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.1e-07
                  EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE CS
  Yop-YscD_cpl 11 eveLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvnger 67
                  +++++++e++iG+d++c + L  ++vs+ h+k+++ e++  l  +  +ngll+++ +
    CDO68612.1 26 SYPIDDEELTIGRDQSCSLRLYYPAVSALHAKITFVERKAFLV-VLGTNGLLLDDAP 81
                  678999***********************************99.8889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 6045.04
//
Query:       CDO68613.1  [L=324]
Description: hypothetical protein BN946_scf184996.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   13.0   0.0       0.33   11.4   0.0    2.0  1  DUF5631   Family of unknown function (DUF5631)


Domain annotation for each model (and alignments):
>> DUF5631  Family of unknown function (DUF5631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05      0.33      14      50 ..     249     285 ..     224     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
     DUF5631  14 rrdgLPrlvhtlakaaaagtgvldeEvdllrehldti 50 
                 + d+L rl+htla aa ++ g  ++ + +l  h++ +
  CDO68613.1 249 SADRLVRLAHTLAGAALQRGGSQNTAIGVLMAHVKAV 285
                 6799***************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2393.66
//
Query:       CDO68614.1  [L=475]
Description: hypothetical protein BN946_scf184996.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-68  230.8   5.1      2e-67  227.6   4.0    2.0  2  Alginate_lyase  Alginate lyase


Domain annotation for each model (and alignments):
>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   0.0    0.0059   1.1e+02     115     149 ..      39      69 ..      26      72 .. 0.86
   2 !  227.6   4.0   1.1e-71     2e-67       1     269 [.      74     367 ..      74     369 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0059
                     GGHHHHHHHHHCTTCSSSHHHHHHHHHHHHHHHHH CS
  Alginate_lyase 115 idtevldalalleaakalpekerkaiekWfkklld 149
                     +d    +a++l+++ ++++++ ++ i +W ++l+ 
      CDO68614.1  39 VD----PAFILAKNFSNVTVEAQATIVQWAQDLAS 69 
                     44....688999*******************9986 PP

  == domain 2  score: 227.6 bits;  conditional E-value: 1.1e-71
                     -CCCCCCCHHTTS-TCCHHHHCCCC..HCTCC............CH.S.CCCCTTSSCHCCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHH CS
  Alginate_lyase   1 svtaksklsdksgdkhdylseapyw..datkp............dglpyvrrdgqrnpnedaecdlkaleawadavallalayyltgdkrYaeka 81 
                     svt+ks + ++sgdkhdy+s+apy+  d++k+              +pyv++dgq+np++++ +d  ++ + +dav   ala+ l+g+  Y   +
      CDO68614.1  74 SVTNKSVT-PPSGDKHDYMSWAPYSwpDCSKAgntteltpeqiwTTCPYVTKDGQFNPDGRLINDVGEFGDLSDAVLYNALAWALDGNAVYSSNV 167
                     699*****.***************99*8888888999*******99************************************************* PP

                     HHHHHHHHHCTTTCCCCCCCCCCCBTT.......GGGGGGH....HHHHHHHHC..TTCSSSHHHHHHHHHHHHHHHHHHHHHCHHHCCCCTGCS CS
  Alginate_lyase  82 gellraWfldpktrmnpnleyaqaikg.....grgagiidt....evldalall..eaakalpekerkaiekWfkklldwlqtsrkgkdekaakn 165
                     ++++++Wf+dp+t+mnpnl+yaq  +g     g+++g++d+    ++++++ +l   +a++++++ ++++ +W + + dwl+t +   +e aa+n
      CDO68614.1 168 AKFVNTWFVDPATSMNPNLNYAQLARGpngqiGQHTGVLDLkcmsKLVSGVLILreGKAAEWTSDIDTQLTNWTNSYIDWLTTAKIALEEEAATN 262
                     ******************************************9*9999999999988999*********************************** PP

                     HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-TTS-BHHHHGSGGGHHHHHHHHHHHHHHHHHHHHCTT--GTC..TCTCCCHHHHH CS
  Alginate_lyase 166 NHgywaalqvaaialvlgdrdlldkalkrykrailndqiapdGslpeElaRgtralhYsnfaLqalvmiaelaerngvdlwey.sedgktlkkav 259
                     NHg+++  q+aa+ +++gd+d +++++++y ++i+ +qia++G +p+E+aR tr++hY +++L+a+++ a+l++ +g+d w+  +++g t+k a+
      CDO68614.1 263 NHGSFYYNQLAALQILVGDKDGAKQTIEKYFTGIYMNQIAANGDQPLESAR-TRPYHYRAYNLAAMITNAKLGQYVGYDAWNLtTSKGTTIKSAL 356
                     ***************************************************.******************************************* PP

                     HHHHHHHH.-T CS
  Alginate_lyase 260 dfllpyve.dp 269
                     d+ +++++ d+
      CDO68614.1 357 DYAITQQAgDE 367
                     ****9988554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3736.45
//
Query:       CDO68615.1  [L=379]
Description: Glycoside Hydrolase Family 28 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-59  200.0  11.4    6.1e-59  199.7  11.4    1.1  1  Glyco_hydro_28  Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7  11.4   3.4e-63   6.1e-59       1     302 [.      42     344 ..      42     369 .. 0.88

  Alignments for each domain:
  == domain 1  score: 199.7 bits;  conditional E-value: 3.4e-63
  Glyco_hydro_28   1 CssivlsqlevpksgelldllklkgplksgttvtlegtttakvkekngkddivisgekitvlgisGkgtidGqGqawwdgkgkkkkegkkkpkfl 95 
                     C+++ +++++vp+ ge+ + l+l+    +gttv+++g +t++vk+++g+ +  +sg++it  g +G +t+dG+G ++wdg g   ++g +kp  +
      CDO68615.1  42 CTTVNINSFTVPA-GETFN-LDLA----DGTTVNMQGDVTFAVKDWDGP-LFQVSGKSITFNG-NG-HTFDGNGPSYWDGLGG--NGGVTKPAPM 125
                     99***********.66654.3455....8********************.*********9766.89.***************9..8888888765 PP

  Glyco_hydro_28  96 vikkvknskiknlniknspvfhfsvesgkdltisditidasagd............hNtDgidvgsskgvtisntnikngDDciainsgsknisi 178
                        k  + + +n++++nsp  + sv++   lt+s+++id sagd            hNtDg+dv+  +   i+n++i+n+DDc+ain+g+ ni +
      CDO68615.1 126 MKIK-ISGTYTNVKVLNSPARVYSVSNPAPLTMSNLVIDDSAGDapnsksdgkpagHNTDGFDVST-NDLIIENSTIHNQDDCLAINKGT-NIVF 217
                     4333.378899*****************************************************75.6677*******************.**** PP

  Glyco_hydro_28 179 tnvtcggGHGlSiGSvggrsdntVknvtvkdskvknsenGvRIKtikgat.gtvsnvkyeniklknva.ypividqdYenkeptgkptsgvkisd 271
                     +++tc gGHG+SiGS+ +    tV+++ +++++v+n + ++RIKt  +at  tv+nv+y+  + ++    +++idq Y ++ +t  +  ++++  
      CDO68615.1 218 QGNTCIGGHGISIGSISSD--VTVSGIVIQNNNVQNNDQALRIKTKASATdSTVTNVTYSGNVGTGLRqFGVLIDQSYPDTLGTPGNGVTISVGT 310
                     ****************977..9************************9776379********999**999*********99877766655555555 PP

  Glyco_hydro_28 272 vtfk...nvtgtvks.aeavkllcekgskcsdvtm 302
                     + +        tv+s ae+v ++c++gs c++ ++
      CDO68615.1 311 LHLFqrpALCLTVNSdAERVAVNCGSGS-CTGQHL 344
                     5432122467799999************.*98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2906.10
//
Query:       CDO68616.1  [L=1194]
Description: hypothetical protein BN946_scf184996.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-11   43.4   0.0    3.8e-11   42.5   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain
      2e-06   27.8   9.4    3.6e-06   27.0   9.4    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   4.3e-15   3.8e-11      85     199 ..     443     556 ..     357     592 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.3e-15
  Fungal_trans  85 sspssslwilqsLlllelyektssdralher...hhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpplldd 178
                   ++ +++l ++ +  l  l+ +  +  + + +   ++g  v++ar +gL  +p         +++ +eae+rrRlww +++ D ++a ++G+ppl+ d
    CDO68616.1 443 KTAAYDLDSVMAMILQILFMLHEGQMSVAQNvfpLVGKLVNVARMMGLAMDPDEFPG----TYSLFEAEARRRLWWDVYCYDLFVADCMGHPPLIAD 535
                   445555666665555555555555555555577799******************996....5*********************************** PP

  Fungal_trans 179 sqinlpLPcddddlwesddas 199
                   +  +++ P d d+  ++ + +
    CDO68616.1 536 NTHTTRVPADVDEDKFTPSST 556
                   **********99666655544 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   9.4     4e-10   3.6e-06       2      36 ..      70     104 ..      69     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 4e-10
                 S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfyses 36 
                 +C +C++ K KCd+++P Cs+C k+   + C+ ys+ 
  CDO68616.1  70 VCAECKRLKLKCDRRTP-CSSCLKRDtvTRCV-YSQA 104
                 7****************.********999***.8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 7305.98
//
Query:       CDO68617.1  [L=423]
Description: hypothetical protein BN946_scf184996.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-20   70.6   0.0    2.3e-13   49.4   0.0    2.1  2  FMO-like       Flavin-binding monooxygenase-like
    1.3e-17   64.1   0.0    6.3e-14   51.9   0.0    2.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-12   47.6   0.0    2.3e-07   30.4   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    9.8e-10   38.1   0.0    4.9e-08   32.5   0.0    2.6  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0027   17.8   0.3      0.012   15.7   0.0    2.0  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.019   15.5   0.1       0.36   11.4   0.0    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.035   14.3   0.2       0.55   10.5   0.0    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.088   13.3   0.0       0.17   12.3   0.0    1.4  1  NAD_binding_7  Putative NAD(P)-binding
       0.09   11.8   1.1        1.1    8.2   0.1    2.4  3  Lycopene_cycl  Lycopene cyclase protein
       0.13   12.2   0.0         18    5.3   0.0    3.1  3  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   1.3e-16   2.3e-13      72     222 ..      63     208 ..      58     213 .. 0.89
   2 !   19.0   0.0   2.2e-07   0.00039     291     331 ..     307     348 ..     299     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.3e-16
    FMO-like  72 plpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfst.sGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqy 169
                 p p ++p++ +++ l ++ + +a   +l+ +     t ++++ +p + t s  w+v+  ++g   +     ++  tG + +p++p    pG + f+Gq+
  CDO68617.1  63 PYPTNWPEYTPRDMLADWCEHYASIQELIVW-----TGSEIHPNPTYDTaSCTWDVTVLRDGEPLKLHPSHIVFTTGTMEEPFMPD--CPGRDVFRGQV 154
                 8899********************9999876.....45677777776542789*********9988888889999**********5..8********** PP

    FMO-like 170 fhsrdykepevfkgkrvlviGlGnsggdiavels.rtaeqvllstrsGswvlsr 222
                 +hs  ++  + f+gkrv+v+G G s+ d   +l  + ae v +  rs + vlsr
  CDO68617.1 155 LHSSSFRGGSDFSGKRVVVVGAGSSAIDACQDLVlNGAESVTMIQRSSTCVLSR 208
                 *******************************987256999*************9 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.2e-07
    FMO-like 291 ilaGavkvkssvk..eltetsaifedgtveedidvvifatGyt 331
                 +  G +kvks ++  ++tets if dgt   + d+vifatGy 
  CDO68617.1 307 VANGSIKVKSGITpdRFTETSLIFSDGTE-LPADAVIFATGYQ 348
                 56799*****997558***********95.589*********5 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   3.5e-17   6.3e-14       3     198 ..       5     203 ..       4     215 .. 0.80
   2 !    8.4   0.0   0.00063       1.1     213     272 ..     298     352 ..     291     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 3.5e-17
  Pyr_redox_3   3 iGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpik 99 
                  +GaG aGl++a  +k + +   l++E + ++g+ +++     t+ + +  ++ + +        +  p  +   e+  r+ ++++ + +a+ +el + 
   CDO68617.1   5 VGAGQAGLQIAARMKAMRI-PALVIEGHaRVGDHWRKRCPAPTIQTIKRYHTPVAV------LYQPYP--TNWPEYTPRDMLADWCEHYASIQELIVW 93 
                  9******************.789****98899888877666666665444443333......333333..33457888999***************** PP

  Pyr_redox_3 100 lfeeVesvkk...edeg..fevetske..tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkg 187
                  + +e+        ++ +   +v  + e  +++ ++++  tG ++ P +++ pG +    +v h+s ++  ++++g++vvV+G++ Sa+Da  +lv +g
   CDO68617.1  94 TGSEIHPNPTydtASCTwdVTVLRDGEplKLHPSHIVFTTGTMEEPFMPDCPGRDVfrgQVLHSSSFRGGSDFSGKRVVVVGAGSSAIDACQDLVLNG 191
                  *****7543311133341145555555789999*********************95456899***********************************9 PP

  Pyr_redox_3 188 ae.Vtvvtrgse 198
                  ae Vt++ r+s+
   CDO68617.1 192 AEsVTMIQRSST 203
                  855****99875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00063
  Pyr_redox_3 213 dienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdls 272
                  +i    +elv++++ikv +  + ++ +e+     + ++dg+++ + d v++atGy+p ++
   CDO68617.1 298 WIDAGAAELVANGSIKVKSGITPDRFTET----SLIFSDGTELPA-DAVIFATGYQPITE 352
                  66666678888888888888555555554....57899**99986.999*******9765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.3e-10   2.3e-07       6     178 ..       5     205 ..       4     217 .. 0.73
   2 !   15.3   0.0   5.1e-06    0.0091     191     245 ..     305     355 ..     279     421 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.3e-10
                  E--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH......................HHHHCHHHHCCCCHC..CTCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxx..xxxx RF
  Pyr_redox_2   6 iGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias......................evvkklnqgielllg..eevv 76 
                  +G+G AGl+ a ++++  +  +++e   + g +   +c+ +++ +  + ++ +a                       e+  ++++ i +     ++  
   CDO68617.1   5 VGAGQAGLQIAARMKAMRIPALVIEghaRVGDHWRKRCPAPTIQTIKRYHTPVAVlyqpyptnwpeytprdmladwcEHYASIQELIVWTGSeiHPNP 102
                  8***********************88974444444455543333333333333336799999999999999999999887777765444433333345 PP

                  EEEESCEEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Pyr_redox_2  77 kidpgkkkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgke.vtlv 171
                  ++d+++++  ++ +++g+  k+   ++v  tG   +p+ +++pG   +v++++    s  +  ++   kr+vvvG+G  +++ ++ l   g+e vt++
   CDO68617.1 103 TYDTASCTWDVTVLRDGEPLKLHPSHIVFTTGTmeEPFMPDCPGR--DVFRGQVLHSSSFRGGSDFSGKRVVVVGAGSSAIDACQDLVLNGAEsVTMI 198
                  555555555555555577777777********76799999*****..5655533444444555666669******************9999999**** PP

                  ESSSSSS CS
                  xxxxxxx RF
  Pyr_redox_2 172 eardrll 178
                  ++ ++++
   CDO68617.1 199 QRSSTCV 205
                  **99886 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.1e-06
                  HHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle 245
                  e + +  ++vk g ++ ++++ +    ++ +dg+e++ad v++a+G++p te   
   CDO68617.1 305 ELVANGSIKVKSGITPDRFTETS----LIFSDGTELPADAVIFATGYQPITEATR 355
                  44455578999999998888555....9*********************998754 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.56     1e+03       8      38 ..       5      33 ..       4      49 .. 0.68
   2 !   32.5   0.0   2.7e-11   4.9e-08     132     227 ..     110     203 ..      60     214 .. 0.82
   3 ?    2.4   0.0      0.04        72     327     341 ..     334     348 ..     324     349 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
  K_oxygenase  8 iGiGpsnLsLailleevkkelkalflerqpe 38
                 +G+G + L +a++++ ++  + al++e + +
   CDO68617.1  5 VGAGQAGLQIAARMKAMR--IPALVIEGHAR 33
                 778888888888877777..66666666555 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 2.7e-11
  K_oxygenase 132 lltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsea 227
                   ++v++  ++ge  +l+  ++v ++G   ep +P++  +   + +v+Hss++      + ++kr++VvG+G Sa + ++dl+ + +  +++++ rs+ 
   CDO68617.1 110 TWDVTV-LRDGEPLKLHPSHIVFTTGtmEEPFMPDCPGRDVFRGQVLHSSSFRGGS--DFSGKRVVVVGAGSSAIDACQDLVLNGA-ESVTMIQRSST 203
                  345554.379999999**********6669******9887778*********9887..89*********************99877.79999999876 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.04
  K_oxygenase 327 etlevdavvlATGYr 341
                  ++l +dav++ATGY+
   CDO68617.1 334 TELPADAVIFATGYQ 348
                  56789*********8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.94   1.7e+03      18      41 ..       5      28 ..       3      33 .. 0.87
   2 !   15.7   0.0   6.6e-06     0.012       9      46 ..     165     202 ..     157     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.94
                  ES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH 18 iGaGemaelvakhLlakgvkkvvv 41
                  +GaG+ + ++a  + a ++ ++v+
    CDO68617.1  5 VGAGQAGLQIAARMKAMRIPALVI 28
                  8**********9999998887777 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.6e-06
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46 
                   ++++k+v+++GaG  a  +++ L+ +g+++v+ + R+ 
    CDO68617.1 165 DFSGKRVVVVGAGSSAIDACQDLVLNGAESVTMIQRSS 202
                   7899*******************************986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.25   4.5e+02       5      33 ..       5      33 ..       3      40 .. 0.84
   2 ?   11.4   0.0    0.0002      0.36       1      35 [.     170     205 ..     170     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.25
                ECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  5 vGgGyiglElAgalaelgkkVtvversdk 33
                vG+G  gl  A+ +++++    v+e + +
  CDO68617.1  5 VGAGQAGLQIAARMKAMRIPALVIEGHAR 33
                9*************999888777776665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0002
                 EEEEECSSHHHHHHHHHH.HHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgal.aelgkkVtvversdkll 35 
                 +vvvvG+G +++++ + l  + + +Vt+++rs++  
  CDO68617.1 170 RVVVVGAGSSAIDACQDLvLNGAESVTMIQRSSTCV 205
                 79****************5556689******99876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031      0.55       2      35 ..       5      38 ..       4      51 .. 0.93
   2 ?    1.2   0.1      0.25   4.6e+02       1      29 [.     173     202 ..     173     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
                   E--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8  2 vGaGlsGlvaAylLakagfdvlllekrdrlGGra 35
                   vGaG +Gl +A++++  ++  l++e + r+G ++
     CDO68617.1  5 VGAGQAGLQIAARMKAMRIPALVIEGHARVGDHW 38
                   9****************************99665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
                    EE--SHHHHHHHHHHHCCTE.EEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlllekrd 29 
                    +vGaG s+  a++ L  +g+ +v+ +++++
     CDO68617.1 173 VVGAGSSAIDACQDLVLNGAeSVTMIQRSS 202
                    8*******9999999999985698888765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.5e-05      0.17       4      54 ..     165     217 ..     164     255 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.5e-05
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagak.vtvvapev.keeleelvklaeee 54 
                    d++gk+v+vvG+G+ A   ++ l+ +ga+ vt++   + +  + ++++l ++ 
     CDO68617.1 165 DFSGKRVVVVGAGSSAIDACQDLVLNGAEsVTMIQRSStCVLSRDILSLVQRS 217
                    799************************75488887775444444555555544 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00064       1.1       5      34 ..       5      32 ..       3      40 .. 0.87
   2 ?   -3.8   0.1       2.7   4.9e+03       2      19 ..     171     188 ..     171     206 .. 0.69
   3 ?    1.8   0.0     0.053        96     112     142 ..     318     348 ..     304     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00064
  Lycopene_cycl  5 iGaGpAglslAarlteakpglkvvlieasp 34
                   +GaG Agl++Aar+  +++++  ++ie+ +
     CDO68617.1  5 VGAGQAGLQIAARM--KAMRIPALVIEGHA 32
                   9*************..88999988888765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
  Lycopene_cycl   2 vvviGaGpAglslAarlt 19 
                    vvv+GaG   +   + l+
     CDO68617.1 171 VVVVGAGSSAIDACQDLV 188
                    799999998877766664 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.053
  Lycopene_cycl 112 veeeeageslvvleggrkirarlvvdargla 142
                    ++++ ++e++ + ++g +++a +v+ a+g  
     CDO68617.1 318 ITPDRFTETSLIFSDGTELPADAVIFATGYQ 348
                    7889999*********************943 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19   3.4e+02       3      19 ..       5      21 ..       4      90 .. 0.81
   2 ?    1.6   0.0      0.14   2.5e+02       1      20 [.     172     191 ..     172     206 .. 0.81
   3 ?    5.3   0.0    0.0099        18     135     155 ..     327     347 ..     313     348 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.19
  NAD_binding_9  3 vGaGprGlavlerLlar 19
                   vGaG +Gl +++r+ a 
     CDO68617.1  5 VGAGQAGLQIAARMKAM 21
                   9********99997665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
  NAD_binding_9   1 aivGaGprGlavlerLlara 20 
                    ++vGaG +++ +++ L+ + 
     CDO68617.1 172 VVVGAGSSAIDACQDLVLNG 191
                    69************999874 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0099
  NAD_binding_9 135 avlladgaslaadaVvLAlGh 155
                     ++ +dg++l adaV+ A+G 
     CDO68617.1 327 SLIFSDGTELPADAVIFATGY 347
                    56779***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2894.08
//
Query:       CDO68618.1  [L=772]
Description: hypothetical protein BN946_scf184996.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-18   65.2  32.2    1.2e-09   37.5  28.0    2.8  2  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
      0.025   13.8   0.0       0.04   13.2   0.0    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     6e-11   5.4e-07       1      59 [.      79     139 ..      79     143 .. 0.90
   2 !   37.5  28.0   1.4e-13   1.2e-09     113     394 ..     203     477 ..     189     532 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 6e-11
  Transp_cyt_pur   1 pvpeeeRtwk.tlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifv 59 
                     pvp+e+Rt+k ++++f++W++an ni t++ g+ g   +gL+  +s+ vi+v  +i  + v
      CDO68618.1  79 PVPNEQRTDKrLYQFFFVWFSANANILTLSAGTVGpAYYGLGISDSFYVILVVDIIQHMCV 139
                     8***999986489**********************7889*************999877666 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 1.4e-13
  Transp_cyt_pur 113 llmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavklgkse...lfl 204
                     +l+++ i+g ++ +       +l   ++++i  v+sl+i + g + +  +++++ +  +va++ +l    ++    p++  + ++   +    f 
      CDO68618.1 203 YLVINTIVGGQTLAE---TSGHLNATLGIVIIAVISLAITFCGCQVLHWYQTLIWIPNAVAFITMLAVGGAQLRSAPLTNPSPAPP--AmllTFG 292
                     344555554222222...33345555667777777777777777777777777777667776666655555555566666333333..2124566 PP

  Transp_cyt_pur 205 savagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdetagvllililvalaqlgvn 299
                     +++a+ + +++tl    pD+ +y  + +s  k +++a+ ++f+ +l++  l+aa+a+aa  ++aws+   l++  ++ g+l+++il++    g++
      CDO68618.1 293 ASLAATVISWSTLT---PDYGVYHDRRASTWKLFFYAYLGFFAASLPVHFLGAAFAAAATSVPAWSTG--LGDGNDV-GGLVAAILAPTG--GFG 379
                     77777666666665...5**************************************************..9999999.*******99976..567 PP

  Transp_cyt_pur 300 isanllsagldlaallP..kkinikrgsliaavialvivpwkllssssklftaflsllavflspvagvi.iadyfvv.rrgylklaalytrrrgs 390
                      ++ ++++++  +a +P  +++ ++  ++  a + ++++++   s++   +  ++   + f +++++++ +++y+     +++  +++ +rr +s
      CDO68618.1 380 KFLLVMLSLTAPSACAPtmYTVCMSFMTIHRAFARVPRFVIAIVSTAVL-IPLAIVGAGRFYTTFVDILaLIGYWLApFCAIAMTEHFLFRRTFS 473
                     8888888888888888888555555555555555555555555555554.444455555555555555322333333133444445555555555 PP

  Transp_cyt_pur 391 aYwy 394
                     aY +
      CDO68618.1 474 AYDV 477
                     5555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.5e-06      0.04     166     202 ..     537     574 ..     531     579 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-06
  Pyr_redox_3 166 kvvViGgknSavDaAlelvrkgae.Vtvvtrgseieke 202
                   vvV+G+   a+Da  +l+r+gae Vt++ r+ ++++e
   CDO68618.1 537 VVVVVGADSFAIDACQDLARHGAEsVTMIQRSRTWSDE 574
                  589******************9855*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 5085.06
//
Query:       CDO68619.1  [L=189]
Description: hypothetical protein BN946_scf184996.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-07   31.5   0.0      2e-07   30.9   0.0    1.3  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.1e-11     2e-07       2      51 ..      51     102 ..      50     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.1e-11
                    XXSSTTCCTXXTTXEEEEECTS..---TTSEEEEEETTCE-EEEEEEEEETT CS
  Peptidase_S24   2 vpGdSMeptlldGdlilVdkfs..epkrGdivvfrlpgeeeayiKrviglpg 51 
                    v ++SMep +  Gdl++    s   ++ Gdi v ++pg ++ +++rv ++++
     CDO68619.1  51 VLSGSMEPAFYRGDLLFLTNPSdaRYQTGDITVYKIPGADIPIVHRVLETHD 102
                    88***************9944446***********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1349.32
//
Query:       CDO68620.1  [L=443]
Description: hypothetical protein BN946_scf184996.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   31.8   0.5    1.9e-07   30.9   0.5    1.5  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
        6.4    7.2  10.0        1.5    9.2   1.2    3.3  3  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.5   2.1e-11   1.9e-07       1      52 [.     114     193 ..     114     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.1e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST............................CSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP............................slppskKlsKaeiLekAveYIkhL 52 
                 r+ +h+++E+ RR +iN+ l++L +l+                             + ++++K  K ++L k+ve++++L
  CDO68620.1 114 RKLNHSKIEKARRTKINETLATLSSLVNdrnrilpsasgetppasaekeeeakgkkGKKAEEKEFKLDVLVKTVEFMQDL 193
                 789************************************************98877666777999************987 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3      0.13   1.2e+03      51      58 ..      90      97 ..      58     129 .. 0.57
   2 ?    1.7   0.1     0.038   3.4e+02      51      75 ..     162     183 ..     152     189 .. 0.53
   3 ?    9.2   1.2   0.00017       1.5       2      52 ..     220     271 ..     219     284 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.13
     PBP1_TM 51 eeeevprk 58
                +  + p++
  CDO68620.1 90 DPAPAPKR 97
                22222222 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.038
     PBP1_TM  51 eeeevprkgkkkkpprkkrrwlwll 75 
                 eee   +   k+k+  +k   l  l
  CDO68620.1 162 EEEAKGK---KGKKAEEKEFKLDVL 183
                 3333333...333344444445455 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00017
     PBP1_TM   2 sgdDRePiGRkGkkakakparkkasrrrrrdddyddey..ddeedDdddddee 52 
                 s+  ReP+ Rk+   +++ + ++++r+  + dd dd y  dde+   +  +ee
  CDO68620.1 220 SQSSREPLKRKRVDVEERLPPARQKRHHNHPDD-DDCYggDDEHGLANSVEEE 271
                 6788**********9999888888886666555.4433102222222333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3143.16
//
Query:       CDO68621.1  [L=521]
Description: hypothetical protein BN946_scf184996.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-66  222.0   6.1    9.7e-66  221.4   6.1    1.3  1  Gpi1      N-acetylglucosaminyl transferase component (Gpi1)


Domain annotation for each model (and alignments):
>> Gpi1  N-acetylglucosaminyl transferase component (Gpi1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.4   6.1   5.4e-70   9.7e-66       2     187 .]     280     465 ..     279     465 .. 0.99

  Alignments for each domain:
  == domain 1  score: 221.4 bits;  conditional E-value: 5.4e-70
        Gpi1   2 nslwlilnDvllGilllslllenaeviaelieklleellvdslekllewlsgnPaGlKLNkeLasflgklflwviklwksllesllsllelllkllall 100
                 n++wl+lnDv++G++++s+l+en++ +a ++e +++++l+  ++  l wl+++PaGlKLN+eL++f++++++ v+++w  lle  ++++++l+ +++++
  CDO68621.1 280 NCVWLVLNDVIIGVAFGSFLCENRHILAGWLEYSMQHYLIIRMQLALLWLNNWPAGLKLNTELSHFYCNTLVGVVSAWGWLLERSAPYFPALIGAIGIA 378
                 99*********************999999********************************************************************** PP

        Gpi1 101 sllGltfalsllsDllslltlhiylfyvlsariyrlqlevlksLfqlfrGkkyNvLrnrvDsldyeldqlllGtllFtvlvfLlPTv 187
                 +++G+t+ +sllsD+lsllt+h+y++y+lsa ++r ql++  sL++lfrGk+yNvLrnr+Ds+dyeldqlllGt+lFt+l+fL+PTv
  CDO68621.1 379 GCCGMTMIVSLLSDTLSLLTAHTYACYYLSATVFRHQLSLAGSLWNLFRGKRYNVLRNRIDSWDYELDQLLLGTILFTLLAFLYPTV 465
                 **************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3132.79
//
Query:       CDO68622.1  [L=584]
Description: hypothetical protein BN946_scf184996.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-76  256.8   0.2    8.6e-55  186.0   0.0    2.0  2  AMP-binding    AMP-binding enzyme
      3e-15   57.0   0.2    8.3e-15   55.5   0.2    1.8  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   3.7e-23   3.3e-19       6     176 ..      35     206 ..      30     210 .. 0.79
   2 !  186.0   0.0   9.6e-59   8.6e-55     176     422 ..     226     464 ..     225     465 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 3.7e-23
                  HHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCT CS
  AMP-binding   6 aktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvd 103
                  a++ + ++++ +++g+++  +e ++r+++lA+++ s      +   +++pn ++++++  a++k+G++v+ l+++lta+e+ay+l+ +++++l+   +
   CDO68622.1  35 AEYGNYPCFIEEDTGRKVYLAEINHRADALARAFSS----LYNILSLYSPNHVDYLALTCATQKLGGIVAALSASLTADEVAYQLTVARPSLLV--AH 126
                  67889999999999********************97....467899************************************************..55 PP

                  CCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding 104 sel.leklleaaakleavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkPKG 176
                   e   ++l++a+a     + ++vld  +++++ + k+ e+  ++++       +   ++      +a+++++SGTTGkPK+
   CDO68622.1 127 LETlPAALEAAKAVNLPASRIVVLDGHKSKTKLPYKSVEDLINEKTlppykefTF-SKPGEARTKIAFLCFSSGTTGKPKA 206
                  5553444444444444455566777777666666665555444442677887633.33356779****************6 PP

  == domain 2  score: 186.0 bits;  conditional E-value: 9.6e-59
                  EEEEEHHHHHHHHHHHH.HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCC CS
  AMP-binding 176 GVmlshrnlvanvaslk.letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesga 272
                  +V +sh n+++ v +++ +++ ++l++++    +lp++hi+gl++++ ++++  ++vv++ k++    +++l+ i+++++t++  vP  +  l++++ 
   CDO68622.1 226 AVAISHYNVISDVIQFAaFDQGRRLRPGNIASGVLPFSHIYGLVVNIHIMIYLAMSVVVSAKFNY---ERFLQSIDQYGITHLLIVPPQAVLLVKHPL 320
                  599************99988889999*********************************999977...5678***********************987 PP

                  HHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEE CS
  AMP-binding 273 lkaakkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellv 369
                   k    + +lss+r+++++++pls+el+ ++ ++f++ ++ +gYG+TEt+++v+v p+ ++  ++gs+G+ lpg+ +k+v  + g + + +e+Gellv
   CDO68622.1 321 TK----KFKLSSIRMIIAAAAPLSAELTMQLVETFPDaAIGQGYGMTETAAAVAVYPPWQKVGTPGSAGQLLPGTVAKVVKAD-GSLARINEPGELLV 413
                  77....348****************************99**************77666788889******************9.9************* PP

                  EETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 370 rgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   gp+v+ gY+++++at+eaf+  ++wlrTGD + + e+G +++++R+k+lik+
   CDO68622.1 414 MGPQVTLGYYQNEQATKEAFV--DGWLRTGDEVLFKENGDMFVTDRIKELIKV 464
                  ********************9..57***************************8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.2   9.2e-19   8.3e-15       1      76 []     473     560 ..     473     560 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 9.2e-19
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..---..........HHHHHHHHHHHHT-TTT.S-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..sea..........leeeLkahvrkelgpya.vpkkvvfvdelpktrsGK 76 
                    e+E  l+ hp+Va++aV+G+pd+  Ge+++afVvlk+     +          ++  L++hv ++  +y+     v f+d++pk+ sGK
     CDO68622.1 473 ELEGHLLDHPDVADVAVIGIPDDFAGEVPLAFVVLKPTtaA-EvaknpalaeeVKTRLQKHVSATKTKYKwLTGGVDFIDAIPKNPSGK 560
                    78999******************************975331.24456675555666666666777778984666999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3735.23
//
Query:       CDO68623.1  [L=269]
Description: hypothetical protein BN946_scf184996.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1971.52
//
Query:       CDO68624.1  [L=1062]
Description: hypothetical protein BN946_scf184996.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.023   14.4   0.2        0.1   12.4   0.2    2.1  1  CCDC92        Coiled-coil domain of unknown function
      0.028   14.4   9.4        2.4    8.2   0.0    4.8  5  DUF1664       Protein of unknown function (DUF1664)
      0.044   13.7   0.3        2.2    8.3   0.0    3.4  3  ApoB100_C     Apolipoprotein B100 C terminal
      0.046   13.5   3.2       0.18   11.5   0.2    3.0  2  Lectin_N      Hepatic lectin, N-terminal domain
        1.9    7.9  18.0      0.067   12.6   2.3    3.7  3  DUF4618       Domain of unknown function (DUF4618)
        5.1    7.4   8.1         12    6.2   0.1    4.4  4  HALZ          Homeobox associated leucine zipper
        6.3    7.4  14.5         18    6.0   1.0    5.0  5  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   3.9e-05       0.1       6      34 ..     299     327 ..     295     331 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
      CCDC92   6 sleksikFLqqqhaatLkgLHkEIekLqk 34 
                 +l+  i+ L++ haatL  L +E+++Lq+
  CDO68624.1 299 KLQEAIDALKARHAATLATLTAEVAHLQR 327
                 6899999*********************8 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.8     0.088   2.3e+02      65     106 ..      91     132 ..      85     187 .. 0.68
   2 ?   -1.8   0.0       1.2   2.9e+03      61     106 ..     150     195 ..     139     210 .. 0.73
   3 ?    5.9   0.2     0.005        13      43      97 ..     297     351 ..     260     358 .. 0.89
   4 ?   -2.3   0.0       1.7   4.3e+03      90     117 ..     732     759 ..     720     764 .. 0.45
   5 ?    8.2   0.0   0.00093       2.4      31      66 ..     840     875 ..     836     878 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.088
     DUF1664  65 ssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                 +  + r+ +kl +++e+    ++e++e+r+++++ ++++e+ 
  CDO68624.1  91 TLALRRLSDKLTAVEETLLVRTKELAEARSEIANAQHEIEAA 132
                 444455555555555555555555555555555555555443 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
     DUF1664  61 krhLssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                  r+Ls+r++   +++     + +e ++ v ++++ +++ g+  +sv
  CDO68624.1 150 ERELSQRLKAAVEEQRMADLVVQEYAALVRKLEGRIKAPGSSASSV 195
                 5678888877777777777777777777777777776666655555 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.005
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredls 97 
                  +++ + ++ +++  aat   L+++++++++ l++  + s+ ++  ++e+ ed++
  CDO68624.1 297 TDKLQEAIDALKARHAATLATLTAEVAHLQRALEHERAESERLRFALDELTEDIA 351
                 567778888899999999999**************99999999999999999986 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.7
     DUF1664  90 tevredlseigedvesvkeavegleskl 117
                 ++v++  +++++ ++  + a ++l+++l
  CDO68624.1 732 AKVKHRYDSVQRSFRDCHLALKELKKTL 759
                 3333334444444444444444444333 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00093
     DUF1664  31 lmfvTkrslsdavesvskqleqvseslaatkrhLss 66 
                 ++  T r  ++a +s +++l+++ +++a+ kr L +
  CDO68624.1 840 FVVGTDRAVAKATQSFTQKLDDLEHDIASIKRTLHQ 875
                 677899**************************9986 PP

>> ApoB100_C  Apolipoprotein B100 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.19   4.9e+02       6      28 ..      94     116 ..      90     117 .. 0.89
   2 ?    8.3   0.0   0.00084       2.2      22      42 ..     161     181 ..     152     186 .. 0.86
   3 ?   -2.6   0.0       2.3   5.8e+03       4      13 ..     298     307 ..     297     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.19
   ApoB100_C   6 LqefsdqlsdyyEkliaeskrLi 28 
                 L+ +sd+l    E+l+  +k L 
  CDO68624.1  94 LRRLSDKLTAVEETLLVRTKELA 116
                 8899***************9995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00084
   ApoB100_C  22 aeskrLiDLsIekYhafLkYi 42 
                  e +r+ DL++++Y+a+++ +
  CDO68624.1 161 VEEQRMADLVVQEYAALVRKL 181
                 588*************99865 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.3
   ApoB100_C   4 akLqefsdql 13 
                 +kLqe+ d l
  CDO68624.1 298 DKLQEAIDAL 307
                 79****9987 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   7.1e-05      0.18      49     111 ..      61     123 ..      57     136 .. 0.93
   2 ?    0.8   0.3      0.15   3.8e+02      80     109 ..     295     324 ..     214     350 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
    Lectin_N  49 qnsqLqreLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadhsell 111
                  n++L++e+  L++  + + ++   ++ +l+ + ++ls+k+t +e +l  + ++l +  se+ 
  CDO68624.1  61 ENARLKEEVAVLRAYPDSTPTQASFQVPELTLALRRLSDKLTAVEETLLVRTKELAEARSEIA 123
                 689*******************************************************99985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
    Lectin_N  80 sqggslsekvtsleaklekkqqdlkadhse 109
                 s +++l+e +  l+a+     ++l+a+ ++
  CDO68624.1 295 SSTDKLQEAIDALKARHAATLATLTAEVAH 324
                 222222222222222222222222222222 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.3   2.6e-05     0.067      90     200 ..      55     166 ..      39     195 .. 0.82
   2 ?    0.1   5.2      0.17   4.4e+02     125     216 ..     265     350 ..     190     361 .. 0.48
   3 ?   -0.4   0.0      0.24   6.1e+02     190     221 ..     847     878 ..     830     884 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
     DUF4618  90 leqlnakvqklqeelnvLstYkDkeYpvkavqIanlvrqlqqlkdsqqdeldeleelikevleklskkiqkkkekll..kslaektlkatqeaLlqktl 186
                 +++l+++   l+ee+ vL+ Y D      + q+ +l+  l+ l+d+    ++e+  +++++l++  ++i + ++++   ++la ++ ++ +e+L ++  
  CDO68624.1  55 ARALERENARLKEEVAVLRAYPDSTPTQASFQVPELTLALRRLSDKL-TAVEETLLVRTKELAEARSEIANAQHEIEaaRALAADARAREEEGLARERE 152
                 566777777899*************9999**************9975.67899999**************999998622678999999999***99999 PP

     DUF4618 187 enqvlkkeiekfre 200
                  +q+lk  +e++r 
  CDO68624.1 153 LSQRLKAAVEEQRM 166
                 99999999998885 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
     DUF4618 125 lvrqlqqlkdsqqdeldeleelikevleklskkiqkkkekllkslaektlkatqeaLlqktlenqvlkkeiekfrefieeleeeipeLkaev 216
                 l++ +++l++++ d+   + +++++  +k+s++        l+++     +++  +L   t e ++l++ +e+ r + e+l+  ++eL +++
  CDO68624.1 265 LAKAVHELDKHRADDNSAT-KMVSRY-MKFSQSSTD----KLQEAIDALKARHAATLATLTAEVAHLQRALEHERAESERLRFALDELTEDI 350
                 3333333322222222221.121111.122222222....2233333334445566666666666666666666666666666666665554 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.24
     DUF4618 190 vlkkeiekfrefieeleeeipeLkaeveqLqa 221
                 +++k ++ f ++ ++le++i  +k++++q+  
  CDO68624.1 847 AVAKATQSFTQKLDDLEHDIASIKRTLHQITL 878
                 56788888999999999999999988888765 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0047        12      23      40 ..      57      74 ..      54      75 .. 0.92
   2 ?    2.7   0.2     0.057   1.5e+02      27      39 ..     229     241 ..     221     244 .. 0.88
   3 ?   -1.5   0.1       1.2     3e+03      10      21 ..     300     311 ..     297     330 .. 0.60
   4 ?   -2.0   0.1       1.7   4.4e+03      17      27 ..     734     744 ..     732     759 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0047
        HALZ 23 sLkkenekLkaelqeLke 40
                +L++en +Lk e++ L++
  CDO68624.1 57 ALERENARLKEEVAVLRA 74
                79***********99986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.057
        HALZ  27 enekLkaelqeLk 39 
                 +ne+L+ae+++L 
  CDO68624.1 229 QNERLEAEIAKLH 241
                 8**********96 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.2
        HALZ  10 LKasYdaLksdy 21 
                 L+   daLk+++
  CDO68624.1 300 LQEAIDALKARH 311
                 444556666555 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.7
        HALZ  17 LksdydsLkke 27 
                  k++yds+++ 
  CDO68624.1 734 VKHRYDSVQRS 744
                 57888888765 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.5       0.2   5.1e+02      26      54 ..     100     130 ..      21     163 .. 0.63
   2 ?   -1.4   0.0       1.4   3.5e+03      36      64 ..     209     237 ..     170     278 .. 0.55
   3 ?    6.0   1.0     0.007        18      15      82 ..     280     347 ..     276     352 .. 0.79
   4 ?   -2.4   0.0       2.8   7.1e+03      14      29 ..     745     760 ..     726     793 .. 0.49
   5 ?    5.1   0.0     0.013        35      43      80 ..     845     882 ..     805     896 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.2
  Syntaxin-6_N  26 rlledtss..stseeldetrteLrkalrsie 54 
                   +l  ++++   +++el e+r+e+ +a ++ie
    CDO68624.1 100 KLTAVEETllVRTKELAEARSEIANAQHEIE 130
                   2222222222234444444444444444433 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
  Syntaxin-6_N  36 seeldetrteLrkalrsiewdledLeetv 64 
                    + l e ++ L++ l++ + + e Le  +
    CDO68624.1 209 VNTLAEGKSGLQRLLQEFNGQNERLEAEI 237
                   33333334444444444444444444444 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.007
  Syntaxin-6_N  15 nkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekels 82 
                   n+a+++++r+ +  ++++++ +e +d ++    ++l ++  ++  L+++ +  +++ ++ +   +el+
    CDO68624.1 280 NSATKMVSRYMKFSQSSTDKLQEAIDALKARHAATLATLTAEVAHLQRALEHERAESERLRFALDELT 347
                   4556666677665556666789****************************877777777777777766 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.8
  Syntaxin-6_N  14 lnkaeslyrrwerlle 29 
                    + ++  +++ +++l+
    CDO68624.1 745 FRDCHLALKELKKTLT 760
                   2222222222222222 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.013
  Syntaxin-6_N  43 rteLrkalrsiewdledLeetvriveknpskfkideke 80 
                    + + ka +s  ++l+dLe+ ++ +++  ++  ++++e
    CDO68624.1 845 DRAVAKATQSFTQKLDDLEHDIASIKRTLHQITLSPSE 882
                   44455566666666666666665555544444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1448  (0.080763); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.53
# Mc/sec: 6007.68
//
Query:       CDO68625.1  [L=937]
Description: hypothetical protein BN946_scf184996.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-45  155.2   0.0    3.1e-45  154.7   0.0    1.2  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    1.4e-09   38.1   0.0    1.6e-05   24.7   0.0    2.2  2  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   3.5e-49   3.1e-45       1     257 []     546     925 ..     546     925 .. 0.85

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 3.5e-49
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TT.HHHHHHHHHHHHHH.............SH-CC........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.............xxxxx........... RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkg.elakalkdlfkell.............ksksk........... 74 
                 +Gl+N+Gn C+ n+vlQ+L+ +p++ +++ +l+++ + +   ++ +     g+k   l++a  +++ke++             +   k           
  CDO68625.1 546 RGLVNTGNMCFANAVLQILVYCPPFHRFFSELRKHLAGPVVGSQRE-----GTKAtPLVDATIQFLKEFVpdtpapvadskakG---Kereddlfdeld 636
                 59*****************************877777766664443.....333325666666666666655556665544331...133445555555 PP

                 EE--HHHHHHHHHHSGGGT...SSSTCEHHHHHHHHHHHHHHHHCC.............................HCCCHHH.HHHCCCTTSHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxx.xxxxxxxxxxxxxxxx RF
         UCH  75 avsPkklkktlsklaksfs...gykqqDaqEflaflLdqlhedlnr.............................evaeekw.kkhlkrndslitdlfe 140
                 ++ P+ ++ ++++ ++  +   g++q+Da+Efl f Ld+l+e+l +                             + ++++  ++++k+ ds+it++f+
  CDO68625.1 637 SFIPTYVYDAMKEKKRF-AsmiGGHQEDAEEFLGFFLDTLEEELLSlsqslspkepatataddaqtqdgewlevgK-KNKAVtTRSTKSTDSPITRIFG 733
                 9999*****99776655.43669*************************************************8743.3333369*************** PP

                 EEEEE...........................................................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB CS
                 xxxxx...........................................................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
         UCH 141 gqlks...........................................................klklkrlPeiLiihlkRfsynss...ksKlntkve 177
                 g+++s                                                           ++ ++ lP++Li+h+kRf y+ +     K  ++v 
  CDO68625.1 734 GKFRStlhtpyqrdsvtiedwrslqldiqpenvktlrdalqhishpqqvqisiptrpapidatqQVLIEALPPVLILHMKRFLYDTKvgdVVKVGKQVA 832
                 ************************************************************************************999999********* PP

                 --SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTE........EEEEETTEEEEE-HHCCCTT.......CEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx.......xxxxxxx RF
         UCH 178 fpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngk........WykydDetvkevkeeeevls.......sayiLfY 257
                 f  el++ss l   +k+ t++  kY+L++v++H+G s+s+GHY+  + ++++ +        W+++dDe v+ v+ + +v         +ay+LfY
  CDO68625.1 833 FSPELEISSDLIAPAKR-TAQPVKYQLFGVLYHHGpSASGGHYTLDVLHPNR-ElsdrprpaWIRIDDELVSDVHPD-DVFGgldrddrHAYLLFY 925
                 ***********977766.577889*********************8885533.247889999*************76.44444555668******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   2.2e-05      0.19       2      28 ..     547     573 ..     546     583 .. 0.89
   2 !   24.7   0.0   1.8e-09   1.6e-05      97     320 .]     652     901 ..     606     901 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.2e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnl 28 
                 GL n+ + +++N++LQ+l ++pp+ ++
  CDO68625.1 547 GLVNTGNMCFANAVLQILVYCPPFHRF 573
                 999********************9865 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.8e-09
                 xxxxxx.......xxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  97 slssli.......qsfnrflldqlekelketkkns...................................seeesaieqllgtkaettirclkCgseks 153
                  ++s+i       ++f  f+ld+le+el + +++                                    ++++s+i++++g k  +t++        +
  CDO68625.1 652 RFASMIgghqedaEEFLGFFLDTLEEELLSLSQSLspkepatataddaqtqdgewlevgkknkavttrstKSTDSPITRIFGGKFRSTLHTP-----YQ 745
                 4555554443333359999********999887779999*****************************99999*************999998.....45 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx........xxxxxxx RF
       UCH_1 154 rksstlvldlkyPkpsnekkeakvtfasilksslerekttrawCekCkryqpteqrktvknlPpvLalnakle.eeeelelwkt........knwlple 243
                 r+s+t+  d    + +  ++e+ +t+ + l++  +  ++ +   ++       +q+  ++ lPpvL+l++k++  +++              +  +++e
  CDO68625.1 746 RDSVTIE-DWRSLQLDI-QPENVKTLRDALQHISHP-QQVQISIPTRPAPIDATQQVLIEALPPVLILHMKRFlYDTK-----VgdvvkvgkQVAFSPE 836
                 5555544.331111111.345557788888887766.55566666656666666666677***********9987751.....1112223436888888 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
       UCH_1 244 iklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekeler.dppesqWylFNDflV 320
                 +++s d             ++ak + + ++Y+L++v +h g s + gh+   v    +++e  d p   W+ ++D lV
  CDO68625.1 837 LEISSD-----------LIAPAKRTAQPVKYQLFGVLYHHGPSASGGHYTLDVLH--PNRELsDRPRPAWIRIDDELV 901
                 888333...........34456678999*************9988****766654..444443777779*99999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 5652.45
//
Query:       CDO68626.1  [L=1125]
Description: Glycosyltransferase Family 39 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-104  347.6   0.0   3.1e-104  347.0   0.0    1.2  1  Fibrillarin      Fibrillarin
    5.6e-81  271.7  18.8    1.1e-80  270.8  18.8    1.5  1  PMT              Dolichyl-phosphate-mannose-protein mannosylt
    3.1e-59  199.9   8.2    3.1e-59  199.9   8.2    2.0  2  PMT_4TMC         C-terminal four TMM region of protein-O-mann
      1e-27   97.2   0.0    1.7e-27   96.5   0.0    1.2  1  MIR              MIR domain
     0.0022   17.7   0.0     0.0039   16.9   0.0    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.066   12.9   0.1       0.13   12.0   0.1    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.0   0.0    1e-107  3.1e-104       1     225 [.      71     299 ..      71     300 .. 0.99

  Alignments for each domain:
  == domain 1  score: 347.0 bits;  conditional E-value: 1e-107
                  EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE......EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHHHHHHHHHH CS
  Fibrillarin   1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee......EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGttvsHvsDiv 92 
                  v++h +++gv+i+++k++  l+tknlvpge+vYgEk+i+v++       EyRvWnpfrsKlaa+il gl+++ i++g+kvLYlGaasGt+vsHv+Div
   CDO68626.1  71 VKPH-RHKGVFIAEGKESL-LVTKNLVPGEAVYGEKRISVDGGvegtkvEYRVWNPFRSKLAAGILGGLDDIFIEPGKKVLYLGAASGTSVSHVADIV 166
                  6788.**********9999.********************9999999*************************************************** PP

                  TTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHHSSSSHHHHH CS
  Fibrillarin  93 geegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyllisikarsidvtkepeevf 190
                  g+egvvyavefs r++r+li +akkR+n++Pi+eDAr+P++Yr+l+++vDvifaDvaqpdqari+++na++flk+gg+++isika++id+t+ p++vf
   CDO68626.1 167 GPEGVVYAVEFSLRSGRDLIGMAKKRTNVIPIVEDARTPHRYRMLLSTVDVIFADVAQPDQARIVTHNAEYFLKDGGHVVISIKASCIDSTAPPTAVF 264
                  ************************************************************************************************** PP

                  HHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
  Fibrillarin 191 keeveklkeeglkvleqvklepyekdhalvvgkyk 225
                  ++ev+ l+e++++++eqv+lepye+dha+v+++y+
   CDO68626.1 265 AREVDVLRENKFDPIEQVTLEPYERDHAMVTAVYR 299
                  ********************************997 PP

>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8  18.8   3.7e-84   1.1e-80       2     245 .]     443     686 ..     442     686 .. 0.99

  Alignments for each domain:
  == domain 1  score: 270.8 bits;  conditional E-value: 3.7e-84
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 i tll+ ++r+++++  n vv+de+hfgkf+s Yl+++f++dvhpplgkml++l g Lag+dg+f+f s     ypenvpyv++R++ a++g+ +vpl 
  CDO68626.1 443 IYTLLSCYTRFHKIGKSNVVVWDEAHFGKFGSHYLKREFYFDVHPPLGKMLVGLTGLLAGYDGSFDFSSG--ATYPENVPYVAMRVMMAIFGVAMVPLG 539
                 789*******************************************************************..59************************* PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvllvgllli 197
                  +t++elg+s  ++ l al+vl + + + +sr+illds+Llfft ++++c+ kf+  +++pf+  ww wl ltg ++g+++svKwvglf++ lvg ++i
  CDO68626.1 540 WYTAVELGMSWMACHLVALMVLCDVAWLCISRFILLDSMLLFFTFTTVFCMAKFHnqQYRPFTVDWWVWLALTGWSIGCVCSVKWVGLFVTCLVGAYTI 638
                 *********************************************************99**************************************** PP

         PMT 198 welwqllgdkslllksivkhllaralaliviPvtlylavftvhfwllf 245
                  +lw ++gd+ ++  ++++h+ ar+ +liv+P+ +y+  f++hf +l+
  CDO68626.1 639 EDLWEKFGDLRMSVREQLWHWGARVACLIVLPAIIYMSSFKLHFLILN 686
                 ********************************************9885 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   2.0       2.7   8.1e+03     143     143 ..     593     593 ..     549     651 .. 0.54
   2 !  199.9   8.2     1e-62   3.1e-59       1     199 []     920    1120 ..     920    1120 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.7
    PMT_4TMC 143 l 143
                 +
  CDO68626.1 593 F 593
                 1 PP

  == domain 2  score: 199.9 bits;  conditional E-value: 1e-62
    PMT_4TMC    1 Flkkflelqkamltsnnaltes....hpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdl.eeee 92  
                  Fl++f++l++am tsnnal+++    + +aS+p++Wpll+ g++++++ ++++++yl+G pv+ww +ti+l+v  l  l++l+r+qr+++d+ ++e+
  CDO68626.1  920 FLRDFWHLNVAMATSNNALVPDpdkeDILASKPLDWPLLRVGLRMCGWGDNQTKYYLIGTPVIWWGGTISLVVGSLAALVYLMRQQRKYQDMePREW 1016
                  99*******************559999*****************************************************************44444 PP

    PMT_4TMC   93 trllnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtsee 189 
                  +++l+ g + l+gw+lh++Pf++mgRv+++hhYlp+l+f++l+la++ld+++ s+++     +++k iv+ +++v ++++F++f+ +++G++g+ ++
  CDO68626.1 1017 EHFLYVGKVALVGWLLHFVPFLIMGRVTYIHHYLPTLYFSVLMLAHVLDHFVFSSRRIS---TRTKQIVFSLCVVTIVGTFWWFRGVAWGIDGPIND 1110
                  44*************************************************96655555...6899******************************* PP

    PMT_4TMC  190 vkklkwlssW 199 
                     lkw+s+W
  CDO68626.1 1111 HWGLKWRSTW 1120
                  ********** PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   5.8e-31   1.7e-27      11     181 ..     732     893 ..     731     898 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.8e-31
         MIR  11 LfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd.....awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqkevs 104
                 L Hsh ++y+ +seqqq       +t+y+ +d++n+    W + +  ++     +  ++++k+g+++Rl+H  T r+L+s+    +p++   + ++evs
  CDO68626.1 732 LLHSHVQTYPVGSEQQQ-------VTCYHYKDENND----WVLLPRWDEppynpEGPIRFLKDGDIIRLQHAPTTRNLHSHPI-PAPVT---KLNNEVS 815
                 78***************.......************....***9998887665555999************************.99999...679**** PP

         MIR 105 ayglegfegdnDk..veifek.ksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedke 181
                 +yg+ ++ + +D   ve+++     ++ k +++ + ++ +r++H+ +gc+L++ ++ l++++f+  q +v c ke+++k+
  CDO68626.1 816 CYGNATIGDYQDYwvVEVVDDiHRGKKDKYDRIHSLTTRLRFRHHASGCYLRAANAILPQWGFK--QIEVSCDKENNPKD 893
                 ****999777999997777651445556678999******************************..**********9998 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0039      38     169 ..     142     281 ..     137     308 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
       GCD14  38 lkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlPaPwea..iphaak 133
                 ++pG +v+  G+ sg+  + +a  v+P G ++++ef  +   + +  + ++    +v   + D+   + + + + ++vD +f D+ +P++a  + h a+
  CDO68626.1 142 IEPGKKVLYLGAASGTSVSHVADIVGPEGVVYAVEFSLR-SGRDLIGMAKK--RTNVIPIVEDARtPHRY-RMLLSTVDVIFADVAQPDQAriVTHNAE 236
                 889***********98777899**************754.43333333333..34444445666625566.56669*************9977788777 PP

       GCD14 134 al.kkeggrlCsf.sPCieqv.......qrtceaLrelgfteiet 169
                  + k+ g ++ s  + Ci+          r +++Lre +f  ie 
  CDO68626.1 237 YFlKDGGHVVISIkASCIDSTapptavfAREVDVLRENKFDPIEQ 281
                 763665555556525788764111111246677777777776664 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.3e-05      0.13      69     174 ..     140     250 ..     127     260 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC..SEEEEES-GGGTTGGG...-SEEEEEESSBBSS--HHHHHT CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle..nvivvvgDGrkGyeek...aPYdaihvgaaapeiPealidQ 162
                 + +++g++vL +G+ sG     +a +vg++g v ++e +     ++ r l   + +  nvi +v D r+ +  +   +  d+i+  +a p+  +  ++ 
  CDO68626.1 140 IFIEPGKKVLYLGAASGTSVSHVADIVGPEGVVYAVEFS----LRSGRDLIGMAKKrtNVIPIVEDARTPHRYRmllSTVDVIFADVAQPDQARIVTHN 234
                 4599***************************88888765....34444443333333488888889887765432237888999988888766555543 PP

                 ....EEEEEEEEEEES CS
        PCMT 163 ....LkeGGrlvvPvg 174
                     Lk+GG++v+ ++
  CDO68626.1 235 aeyfLKDGGHVVISIK 250
                 3334888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 6617.28
//
Query:       CDO68627.1  [L=458]
Description: hypothetical protein BN946_scf184996.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-16   59.3  44.2    3.1e-16   59.3  44.2    2.0  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.8    8.6   0.0        1.8    8.6   0.0    3.7  5  Phage_holin_2_1  Bacteriophage P21 holin S


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3  44.2   3.4e-20   3.1e-16       7     353 .]      77     425 ..      71     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 3.4e-20
       MFS_1   7 lsalarsilgpalplalaed..lgispseigl.................lltl.yalgaavaslplGrlsdrfG.rrr.vlllglllfalglllll.fa 82 
                 ++++++ +++ ++  ++ e+   g sps+i +                 +lt+  +++ ++  l++Gr+ d  G  +  + ++++++ a++ +l +   
  CDO68627.1  77 CATFGFVNAWGVFQAYYEEEilSGTSPSTIAWigsiqastiaqdemmlaMLTVqQYALIFLPGLVVGRIFDM-GwTKTpLGVASAVIVAVT-FLTAeC- 172
                 555555555555554333333334677777775555544444454422333334222234445566777775.447776888888888888.555533. PP

       MFS_1  83 sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 + +w +ll   +  Gl++g++f +++   a+wf++ + g+a+g++++g+slG  + p++   l++ +g+ +++ il+++ + +  l   + + +  +r 
  CDO68627.1 173 TEYWqFLLCQGIALGLACGVIFGVIMGCPAHWFKR-RLGLALGIMALGSSLGGTCFPIAVRNLVQRVGFKWAMRILGFIEIAL--L--SFQFITVERRL 266
                 9***89999999**********************9.**********************************************9..6..55555555555 PP

       MFS_1 181 rkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlll 279
                 ++++++        p+++ ++a+ + p+ + + ++++l+f+g++++lt++ +      g++    + +lla++ + +ai++l +g+lsdr+g+   l +
  CDO68627.1 267 PPKKRTG-------PFID-FSAFNSLPFTL-YCVSSFLAFLGIYTVLTYIDVS-AASEGID-PNFSFYLLAIANACSAIGRLAGGFLSDRVGP---LSV 351
                 5555555.......8899.********887.8888888889999999999996.8888999.455555677777777777**********887...777 PP

       MFS_1 280 allllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 + +++++a ++ + +++++s    +++ +++G+++g+++++l+a ++++  ++  g  +g  +t+ +lg++ gp
  CDO68627.1 352 MTPATFIAGILTYAWPFATSVGGNIAIAIVYGCASGVYVSLLAAPVVRMGKTHDVGVRVGMSMTVIALGAVAGP 425
                 777777777777777777677888888888*****************************************998 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3      0.85   7.7e+03      10      20 ..      72      82 ..      68      89 .. 0.78
   2 ?   -2.1   0.1      0.46   4.1e+03      36      50 ..     156     169 ..     153     176 .. 0.69
   3 ?    8.6   0.0    0.0002       1.8      34      57 ..     185     208 ..     173     212 .. 0.92
   4 ?   -3.0   0.0      0.88   7.9e+03       8      19 ..     217     228 ..     215     254 .. 0.79
   5 ?   -4.0   0.3       1.8   1.6e+04       3      14 ..     376     387 ..     375     392 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.85
  Phage_holin_2_1 10 gaSggsigywl 20
                     +aSg+ +++++
       CDO68627.1 72 CASGACATFGF 82
                     88998888886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.46
  Phage_holin_2_1  36 gvlgglvigllTylt 50 
                      gv++ ++++ +T+lt
       CDO68627.1 156 GVASAVIVA-VTFLT 169
                      665555555.57776 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0002
  Phage_holin_2_1  34 aigvlgglvigllTyltnlYFKrk 57 
                      a+g++ g+++g++      +FKr+
       CDO68627.1 185 ALGLACGVIFGVIMGCPAHWFKRR 208
                      79*********************8 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 0.88
  Phage_holin_2_1   8 sYgaSggsigyw 19 
                      ++g+S g +++ 
       CDO68627.1 217 ALGSSLGGTCFP 228
                      789999988885 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 1.8
  Phage_holin_2_1   3 iatgvsYgaSgg 14 
                      ia ++ Yg + g
       CDO68627.1 376 IAIAIVYGCASG 387
                      566677766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3145.19
//
Query:       CDO68628.1  [L=501]
Description: hypothetical protein BN946_scf184996.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00033   20.5   2.2    0.00082   19.2   2.2    1.7  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   2.2   4.6e-08   0.00082      19      46 ..       9      39 ..       2      41 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.6e-08
  F-box-like 19 s...dLlrlalVCrrWrrvaldtplLWrrlv 46
                s   ++l l+ VCr Wr +al++pl+W++  
  CDO68628.1  9 SldlSWLLLTFVCRLWRLIALNNPLFWSTFR 39
                443469999*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3488.01
//
Query:       CDO68629.1  [L=303]
Description: hypothetical protein BN946_scf184996.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2308.75
//
Query:       CDO68630.1  [L=321]
Description: hypothetical protein BN946_scf184996.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-34  118.7   1.4    2.8e-34  117.9   1.4    1.4  1  MitMem_reg  Maintenance of mitochondrial structure and functi
    1.9e-24   85.9   0.0    4.5e-24   84.7   0.0    1.6  1  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
      0.025   14.6   0.0       0.12   12.4   0.0    2.0  2  Imm3        Immunity protein Imm3


Domain annotation for each model (and alignments):
>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   1.4   4.8e-38   2.8e-34       1     112 []     163     274 ..     163     274 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 4.8e-38
  MitMem_reg   1 Eaeeigvehllkpsiqdas.stlstglnrqyyslkilqerldlikdYlkkveegelpvnheilrnlqkllnllPhleteelekefnvetnDvllvvyLa 98 
                 Eaeeigvehll+ +i+d++ +tl+t++ +q+ sl++lq+rl +i++Yl +v++g++p nh+i ++lq+ lnllP l+++el+++f + tnD +lvvyL+
  CDO68630.1 163 EAEEIGVEHLLR-DIKDSTtTTLATRVAEQLASLRGLQSRLGDIQSYLVDVASGKMPLNHQISYYLQDALNLLPDLNDQELTQSFVTTTNDEMLVVYLS 260
                 9***********.**99999******************************************************************************* PP

  MitMem_reg  99 sltrsilalnelle 112
                 sl+r+++al+ l++
  CDO68630.1 261 SLLRAVIALHALVD 274
                 ***********985 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   7.5e-28   4.5e-24      16     116 ..      17     113 ..       4     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 7.5e-28
                 HHHHHHHHHHHT.S--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-SS--HHHHHHHHHHH CS
         JAB  16 ildhalrtekee.eevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpditvwlsevdvrtqalyq 113
                 + +ha+++   + ++v+G+l+G+ n+  t+++ n+f +pfee+ekd ++++ld++y+ ++ e++kk+++rer++GWYh++p++    +++d ++++l++
  CDO68630.1  17 VDHHARSVPRGSsKRVIGILLGQDNGS-TINVANSFGIPFEEDEKDSKTWFLDHNYIDSMWEMFKKVNARERMIGWYHTGPKL----RASDQEINDLLK 110
                 33444444444379*************.*******************************************************....*********999 PP

                 HHS CS
         JAB 114 rmd 116
                 r++
  CDO68630.1 111 RYI 113
                 985 PP

>> Imm3  Immunity protein Imm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.31   1.8e+03      74     100 ..      76     111 ..      68     127 .. 0.65
   2 ?   12.4   0.0     2e-05      0.12      41      87 ..     200     244 ..     170     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.31
        Imm3  74 ikrLsslnleelk.........gelteeeikdlleR 100
                  +  +++n  e +          + + +ei+dll+R
  CDO68630.1  76 WEMFKKVNARERMigwyhtgpkLRASDQEINDLLKR 111
                 555555555555555555555566778899999988 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
        Imm3  41 eklgeiekvvvdvaigeialkhakvfvklkegiikrLsslnleelkg 87 
                 ++lg+i+  +vdva+g++ l+h+  ++    +  + L  ln +el++
  CDO68630.1 200 SRLGDIQSYLVDVASGKMPLNHQISYYLQ--DALNLLPDLNDQELTQ 244
                 689********************999864..3444555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1600  (0.0892409); expected 358.6 (0.02)
Passed bias filter:                      801  (0.0446762); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2184.97
//
Query:       CDO68631.1  [L=175]
Description: hypothetical protein BN946_scf184996.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-37  126.3   0.0      1e-36  126.0   0.0    1.1  1  COX4      Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   5.6e-41     1e-36      12     136 ..      51     172 ..      41     174 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 5.6e-41
        COX4  12 rwenplpdirfreqseeikaLkekekgdWkeLsleEkkalyrisFgqtlpemkaptk.ewkkvlggvlillglslllfllirlfvagpvpkTlskewqe 109
                  we ++p    +eqs ++++L+e +k dWk+Ls++Ekka+y+++Fg+++p+++ +++ ++ k++ gv  l+ ++++lf+ ir++ a+p+p+T+skew+e
  CDO68631.1  51 MWERLSP----EEQSVIHQQLEEIQKRDWKTLSIDEKKAAYYVAFGPHGPRAPIHPPgTTPKIILGVTGLILAAGALFYSIRAA-APPPPRTISKEWEE 144
                 6999999....********************************************999**************************.************** PP

        COX4 110 aqlermldlkinpitGlssk.wdyekkv 136
                 a++er+++lkinpi+G+ss  +++ + v
  CDO68631.1 145 AENERAIELKINPISGVSSPgYSGPGFV 172
                 **********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1248.87
//
Query:       CDO68632.1  [L=323]
Description: hypothetical protein BN946_scf184996.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-51  170.5  63.4    8.3e-09   35.1   2.0    7.2  7  zf-CCHC    Zinc knuckle
    1.9e-11   43.5  44.6     0.0084   15.8   1.1    7.2  7  zf-CCHC_4  Zinc knuckle
    7.8e-09   35.4  42.0      0.016   15.2   1.7    7.2  7  zf-CCHC_3  Zinc knuckle
     0.0037   17.1  53.6      0.034   14.0   1.8    7.3  7  zf-CCHC_6  Zinc knuckle
  ------ inclusion threshold ------
      0.055   13.2   0.6      0.055   13.2   0.6    6.1  7  zf-CCHC_5  GAG-polyprotein viral zinc-finger


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   4.4   6.3e-09   2.3e-05       1      18 []     134     151 ..     134     151 .. 0.94
   2 !   35.1   2.0   2.3e-12   8.3e-09       1      17 [.     155     171 ..     155     172 .. 0.94
   3 !   32.1   3.2   2.1e-11   7.4e-08       1      18 []     177     194 ..     177     194 .. 0.94
   4 !   27.4   1.8   6.4e-10   2.3e-06       3      18 .]     218     233 ..     217     233 .. 0.95
   5 !   28.3   1.1   3.3e-10   1.2e-06       1      16 [.     256     271 ..     256     272 .. 0.96
   6 !   27.1   2.8     8e-10   2.9e-06       2      18 .]     276     292 ..     275     292 .. 0.95
   7 !   32.2   2.7     2e-11   7.1e-08       1      18 []     296     313 ..     296     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.3e-09
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 r+C+nCG+ GH+a +Cpk
  CDO68632.1 134 RGCFNCGGFGHQAANCPK 151
                 58***************7 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 2.3e-12
                 SCTSSSSSSSSTTTTST CS
     zf-CCHC   1 rkCynCGepGHiardCp 17 
                 ++CynCG++GH++rdC+
  CDO68632.1 155 PTCYNCGQEGHVSRDCT 171
                 58**************8 PP

  == domain 3  score: 32.1 bits;  conditional E-value: 2.1e-11
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 ++Cy+CG++GHi+r+Cp+
  CDO68632.1 177 KTCYRCGKEGHISRECPE 194
                 58***************6 PP

  == domain 4  score: 27.4 bits;  conditional E-value: 6.4e-10
                 TSSSSSSSSTTTTSTS CS
     zf-CCHC   3 CynCGepGHiardCpk 18 
                 Cy+CG++GHiar Cp+
  CDO68632.1 218 CYRCGKVGHIARACPE 233
                 ***************6 PP

  == domain 5  score: 28.3 bits;  conditional E-value: 3.3e-10
                 SCTSSSSSSSSTTTTS CS
     zf-CCHC   1 rkCynCGepGHiardC 16 
                 r+Cy+CG++GH++rdC
  CDO68632.1 256 RTCYTCGGVGHLSRDC 271
                 69************** PP

  == domain 6  score: 27.1 bits;  conditional E-value: 8e-10
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 kCynC + GHi++dCp+
  CDO68632.1 276 KCYNCSGFGHISKDCPQ 292
                 8***************7 PP

  == domain 7  score: 32.2 bits;  conditional E-value: 2e-11
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 r+Cy CG++GHi+rdCp+
  CDO68632.1 296 RACYSCGSEGHISRDCPN 313
                 58***************6 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.1   2.3e-06    0.0084      34      49 .]     136     151 ..     133     151 .. 0.91
   2 !    9.5   0.7   0.00022      0.78      34      48 ..     157     171 ..     154     172 .. 0.92
   3 !    5.8   0.4    0.0033        12      33      48 ..     178     193 ..     176     194 .. 0.91
   4 !    9.6   0.5    0.0002      0.73      34      48 ..     218     232 ..     214     233 .. 0.90
   5 !   10.0   1.2   0.00016      0.56      32      47 ..     256     271 ..     255     273 .. 0.90
   6 !   12.1   1.0   3.5e-05      0.13      31      48 ..     274     291 ..     274     292 .. 0.92
   7 !    9.8   0.9   0.00018      0.65      31      48 ..     295     312 ..     295     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-06
   zf-CCHC_4  34 CyiCgvlGHsdkrCdk 49 
                 C++Cg +GH++++C+k
  CDO68632.1 136 CFNCGGFGHQAANCPK 151
                 **************95 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00022
   zf-CCHC_4  34 CyiCgvlGHsdkrCd 48 
                 Cy+Cg  GH+ ++C 
  CDO68632.1 157 CYNCGQEGHVSRDCT 171
                 **************6 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0033
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  Cy Cg  GH  ++C+
  CDO68632.1 178 TCYRCGKEGHISRECP 193
                 6**************8 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0002
   zf-CCHC_4  34 CyiCgvlGHsdkrCd 48 
                 Cy Cg +GH +++C+
  CDO68632.1 218 CYRCGKVGHIARACP 232
                 **************8 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00016
   zf-CCHC_4  32 sfCyiCgvlGHsdkrC 47 
                 + Cy+Cg +GH  ++C
  CDO68632.1 256 RTCYTCGGVGHLSRDC 271
                 78*********99999 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 3.5e-05
   zf-CCHC_4  31 rsfCyiCgvlGHsdkrCd 48 
                 +s+Cy+C  +GH  k+C+
  CDO68632.1 274 GSKCYNCSGFGHISKDCP 291
                 589**************8 PP

  == domain 7  score: 9.8 bits;  conditional E-value: 0.00018
   zf-CCHC_4  31 rsfCyiCgvlGHsdkrCd 48 
                 r++Cy+Cg  GH  ++C+
  CDO68632.1 295 RRACYSCGSEGHISRDCP 312
                 689**************8 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.0     0.013        47       6      23 ..     135     152 ..     130     156 .. 0.79
   2 !   10.4   1.9   0.00014       0.5       4      27 ..     154     175 ..     151     178 .. 0.79
   3 !   15.2   1.7   4.5e-06     0.016       2      22 ..     174     194 ..     173     202 .. 0.83
   4 !    7.8   0.1   0.00086       3.1       4      21 ..     215     232 ..     213     240 .. 0.83
   5 !    6.0   3.0    0.0033        12       4      26 ..     255     276 ..     253     278 .. 0.82
   6 !    5.5   3.1    0.0046        17       6      26 ..     276     296 ..     273     299 .. 0.82
   7 !   13.2   0.3   1.8e-05     0.064       3      27 ..     294     318 ..     292     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.013
   zf-CCHC_3   6 aCQkClkkGHwtYECkna 23 
                  C +C+++GH +  C++a
  CDO68632.1 135 GCFNCGGFGHQAANCPKA 152
                 5999******99999854 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
   zf-CCHC_3   4 saaCQkClkkGHwtYECknagerk 27 
                 + +C +C+++GH +  C+  +e k
  CDO68632.1 154 TPTCYNCGQEGHVSRDCT--AETK 175
                 678**************9..4443 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 4.5e-06
   zf-CCHC_3   2 nasaaCQkClkkGHwtYECkn 22 
                 ++ ++C +C+k+GH + EC++
  CDO68632.1 174 TKAKTCYRCGKEGHISRECPE 194
                 56799**************94 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00086
   zf-CCHC_3   4 saaCQkClkkGHwtYECk 21 
                 s+ C +C+k GH +  C+
  CDO68632.1 215 STECYRCGKVGHIARACP 232
                 789*********987777 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0033
   zf-CCHC_3   4 saaCQkClkkGHwtYECknager 26 
                 + +C +C++ GH++  C  +g++
  CDO68632.1 255 QRTCYTCGGVGHLSRDCV-QGSK 276
                 679***********9998.5555 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.0046
   zf-CCHC_3   6 aCQkClkkGHwtYECknager 26 
                  C +C+++GH +  C++ ++r
  CDO68632.1 276 KCYNCSGFGHISKDCPQPQRR 296
                 699*************86655 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 1.8e-05
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknagerk 27 
                 ++ aC  C+++GH +  C+na++++
  CDO68632.1 294 QRRACYSCGSEGHISRDCPNAQTAA 318
                 6889***************977665 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   6.1   0.00024      0.84       4      20 ..     136     150 ..     134     153 .. 0.88
   2 ?    2.8   0.8      0.03   1.1e+02       4      15 ..     157     168 ..     156     171 .. 0.85
   3 ?    2.7   0.7     0.032   1.2e+02       4      20 ..     179     193 ..     176     198 .. 0.88
   4 !    5.9   1.5    0.0033        12       4      20 ..     218     232 ..     216     235 .. 0.90
   5 !    5.6   1.1     0.004        14       4      15 ..     258     269 ..     255     271 .. 0.84
   6 !   14.0   1.8   9.5e-06     0.034       3      22 ..     276     293 ..     275     297 .. 0.87
   7 !    7.6   0.4   0.00095       3.4       1      25 [.     295     317 ..     295     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
   zf-CCHC_6   4 CknCGAFGHtarSkrCP 20 
                 C nCG FGH+a    CP
  CDO68632.1 136 CFNCGGFGHQA--ANCP 150
                 99*********..5687 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.03
   zf-CCHC_6   4 CknCGAFGHtar 15 
                 C nCG  GH  r
  CDO68632.1 157 CYNCGQEGHVSR 168
                 9********875 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.032
   zf-CCHC_6   4 CknCGAFGHtarSkrCP 20 
                 C  CG  GH    + CP
  CDO68632.1 179 CYRCGKEGHIS--RECP 193
                 999******85..8999 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0033
   zf-CCHC_6   4 CknCGAFGHtarSkrCP 20 
                 C  CG  GH a  + CP
  CDO68632.1 218 CYRCGKVGHIA--RACP 232
                 99*********..7888 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.004
   zf-CCHC_6   4 CknCGAFGHtar 15 
                 C  CG  GH  r
  CDO68632.1 258 CYTCGGVGHLSR 269
                 99*******875 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 9.5e-06
   zf-CCHC_6   3 KCknCGAFGHtarSkrCPmk 22 
                 KC nC  FGH    k CP+ 
  CDO68632.1 276 KCYNCSGFGHIS--KDCPQP 293
                 9*********85..9***85 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.00095
   zf-CCHC_6   1 rvKCknCGAFGHtarSkrCPmkcwn 25 
                 r  C  CG  GH    + CP  +  
  CDO68632.1 295 RRACYSCGSEGHIS--RDCPNAQTA 317
                 567*********86..99**87765 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.9       1.2   4.3e+03       5      18 ..     136     149 ..     135     151 .. 0.85
   2 ?   10.5   0.2   0.00011      0.38       5      21 ..     157     173 ..     155     178 .. 0.90
   3 ?   13.2   0.6   1.5e-05     0.055       5      30 ..     179     204 ..     175     210 .. 0.78
   4 ?   11.1   0.7   6.9e-05      0.25       5      18 ..     218     231 ..     215     233 .. 0.93
   5 ?    1.3   1.1     0.082   2.9e+02       5      18 ..     258     271 ..     255     277 .. 0.90
   6 ?   -2.2   0.2      0.95   3.4e+03       5      18 ..     277     290 ..     273     291 .. 0.80
   7 ?    3.1   0.7     0.022        78       5      18 ..     298     311 ..     294     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                 -TTT-SSBS-TTT- CS
   zf-CCHC_5   5 CpRCkkgkHwardC 18 
                 C  C+   H a +C
  CDO68632.1 136 CFNCGGFGHQAANC 149
                 88899989999998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
                 -TTT-SSBS-TTT---S CS
   zf-CCHC_5   5 CpRCkkgkHwardChsk 21 
                 C  C++  H+ rdC + 
  CDO68632.1 157 CYNCGQEGHVSRDCTAE 173
                 999***********986 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.5e-05
                 -TTT-SSBS-TTT---SEEGGGEE-- CS
   zf-CCHC_5   5 CpRCkkgkHwardChskfdknGnpLs 30 
                 C RC+k  H  r+C   +   G   s
  CDO68632.1 179 CYRCGKEGHISRECPESTNASGGNFS 204
                 **************766666665555 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 6.9e-05
                 -TTT-SSBS-TTT- CS
   zf-CCHC_5   5 CpRCkkgkHwardC 18 
                 C RC+k  H ar C
  CDO68632.1 218 CYRCGKVGHIARAC 231
                 ************** PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.082
                 -TTT-SSBS-TTT- CS
   zf-CCHC_5   5 CpRCkkgkHwardC 18 
                 C  C+   H  rdC
  CDO68632.1 258 CYTCGGVGHLSRDC 271
                 999**99******* PP

  == domain 6  score: -2.2 bits;  conditional E-value: 0.95
                 -TTT-SSBS-TTT- CS
   zf-CCHC_5   5 CpRCkkgkHwardC 18 
                 C  C    H  +dC
  CDO68632.1 277 CYNCSGFGHISKDC 290
                 77787778999999 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.022
                 -TTT-SSBS-TTT- CS
   zf-CCHC_5   5 CpRCkkgkHwardC 18 
                 C  C+   H  rdC
  CDO68632.1 298 CYSCGSEGHISRDC 311
                 999*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2095.75
//
Query:       CDO68633.1  [L=74]
Description: hypothetical protein BN946_scf184996.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-22   77.3   2.8    8.7e-22   76.9   2.8    1.2  1  ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
  ------ inclusion threshold ------
      0.072   12.7   3.6       0.11   12.0   3.6    1.3  1  PikAIV_N      Narbonolide/10-deoxymethynolide synthase PikA4 


Domain annotation for each model (and alignments):
>> ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   2.8   9.7e-26   8.7e-22       1      49 []       4      51 ..       4      51 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 9.7e-26
                  --TTTTS--HHHHHHHHHHHCCHSS-TTT--CCCCCS----EEEE--TT CS
  ATP-synt_Eps  1 saWRaaglsYnkYsniaAravRraLKeelraaAekreetelkytkwenG 49
                  ++WR   ++YnkYs+iaAra+R++LKee+r+ Aekr+ t l+y+kwenG
    CDO68633.1  4 ATWR-NVFTYNKYSQIAARALRASLKEEERVVAEKRGVTILRYQKWENG 51
                  68**.*******************************************9 PP

>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.6   1.3e-05      0.11       9      19 ..      22      32 ..      19      32 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
    PikAIV_N  9 ALRaSLkEnER 19
                ALRaSLkE ER
  CDO68633.1 22 ALRASLKEEER 32
                9*******999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 518.53
//
Query:       CDO68634.1  [L=180]
Description: hypothetical protein BN946_scf184996.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-29  100.3   0.0    2.9e-18   66.0   0.0    2.0  2  Ras          Ras family
    6.1e-12   45.8   0.0    3.7e-07   30.4   0.0    2.2  2  Roc          Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.055   13.5   0.0        0.1   12.7   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
       0.12   12.3   0.0          4    7.3   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
       0.15   10.8   0.0        2.2    7.0   0.0    1.9  2  Adeno_IVa2   Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   5.3e-12   1.9e-08       1      50 [.      11      62 ..      11      64 .. 0.89
   2 !   66.0   0.0   8.1e-22   2.9e-18      81     161 ..      59     151 ..      57     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 5.3e-12
                EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET..TEEEEE CS
         Ras  1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd..gkevkl 50
                K+++ Gd avGK+sll+r ++++F  + ++T+gv+f +k +++   +k vkl
  CDO68634.1 11 KFIITGDAAVGKSSLLVRLTDQRFLANPDPTLGVEFGSKLMTIPeeNKIVKL 62
                89************************************99999843455555 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 8.1e-22
                 TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  81 itsresfenvkkwveeikrvaeenvpivLvGnKvDlee............kravsteegeelakelglkfletSAktnenveeafeellreil 161
                 i + + f n+++w+++++++a+ +++++LvGnK+Dl +            kr+vstee+e +ake gl f+e+SAk+ enve afe+++r+il
  CDO68634.1  59 IVKLQCFVNARSWLQDVREHADPHLTCILVGNKIDLCSddasatpphgkrKREVSTEEAELWAKEEGLLFVEASAKSGENVEVAFESATRDIL 151
                 677899****************99*************99**************************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     1e-10   3.7e-07       1      58 [.      11      62 ..      11      66 .. 0.82
   2 !   14.1   0.0   1.2e-05     0.042      92     120 .]      65      94 ..      59      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1e-10
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEE CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvkl 58
                K ++ Gd++vGK+sll r+++++f  + ++t+gv+f +k + +i +   ++  k vkl
  CDO68634.1 11 KFIITGDAAVGKSSLLVRLTDQRFLANPDPTLGVEFGSKLM-TIPE---EN--KIVKL 62
                889*********************************99865.4543...22..33444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.2e-05
                 HHCHHHHHHHHHHHCSSS.-EEEEEE-TTT CS
         Roc  92 senlkeWlkelkkvagks.pvilvgnkiDl 120
                 + n+++Wl++++++a+    +ilvgnkiDl
  CDO68634.1  65 FVNARSWLQDVREHADPHlTCILVGNKIDL 94 
                 568899********9855389*******95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05       0.1       2      28 ..      12      38 ..      11      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                EEEEESTTSSHHHHHHHHHTSTEEESS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsd 28
                ++i G   vGKS+L+ +lt+++  ++ 
  CDO68634.1 12 FIITGDAAVGKSSLLVRLTDQRFLANP 38
                6799***************99766554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0011         4     103     122 ..      13      32 ..       8      52 .. 0.89
   2 ?    3.1   0.0     0.022        78      46      64 ..      82     109 ..      73     150 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  ++ G   vGKS+L+ +l+ +
   CDO68634.1  13 IITGDAAVGKSSLLVRLTDQ 32 
                  789***********999876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.022
                  T-EEEEEEE-GGG--HHH.........H CS
  RsgA_GTPase  46 giepvivlnKiDlleeee.........e 64 
                  +++ ++v nKiDl++++          +
   CDO68634.1  82 HLTCILVGNKIDLCSDDAsatpphgkrK 109
                  56788999*******9985555444430 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00062       2.2      91     142 ..      13      64 ..       7      71 .. 0.87
   2 ?    1.8   0.0     0.023        83     130     176 ..     102     148 ..      93     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00062
  Adeno_IVa2  91 viyGPtGsGksqllrnlissklisPiPetvifitPekdmipPeelkaWelql 142
                 +i G +  Gks ll  l   +++  +  t+      k m  Pee+k  +lq 
  CDO68634.1  13 IITGDAAVGKSSLLVRLTDQRFLANPDPTLGVEFGSKLMTIPEENKIVKLQC 64 
                 899*****************99977666777777889999*********995 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.023
  Adeno_IVa2 130 ipPeelkaWelqlvegnyekredGtiiPktstlrpefvelayeeava 176
                  pP+ ++  e+   e++  ++e+G +  ++s+ + e ve+a+e a+ 
  CDO68634.1 102 TPPHGKRKREVSTEEAELWAKEEGLLFVEASAKSGENVEVAFESATR 148
                 5888888999999999999************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1294.41
//
Query:       CDO68635.1  [L=398]
Description: hypothetical protein BN946_scf184996.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-45  155.6   0.5      1e-45  155.6   0.5    1.7  2  DEAD           DEAD/DEAH box helicase
    1.1e-32  112.7   0.4    1.7e-31  108.8   0.1    2.7  3  Helicase_C     Helicase conserved C-terminal domain
    5.6e-06   26.5   0.0      1e-05   25.6   0.0    1.5  1  ResIII         Type III restriction enzyme, res subunit
    0.00032   21.0   1.3     0.0084   16.5   0.3    2.4  2  AAA_19         AAA domain
    0.00061   19.6   0.0     0.0013   18.5   0.0    1.5  1  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.014   14.9   0.1       0.02   14.4   0.1    1.3  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
      0.043   13.2   0.0        0.1   12.0   0.0    1.6  1  CMS1           U3-containing 90S pre-ribosomal complex subuni
      0.045   13.1   0.0       0.13   11.6   0.0    1.7  2  tRNA-synt_1b   tRNA synthetases class I (W and Y)
      0.064   13.2   0.1       0.33   10.9   0.1    2.3  1  Flavi_DEAD     Flavivirus DEAD domain
       0.16   12.2   0.3       0.64   10.3   0.3    2.0  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.5   5.8e-49     1e-45       2     174 ..      53     216 ..      52     218 .. 0.96
   2 ?   -2.0   0.0       1.4   2.6e+03      63     105 ..     283     324 ..     255     340 .. 0.46

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 5.8e-49
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ++ai  +++g+dv+++a+ G+GKT+ f+i +lq++    + +g++ali++PtreLa+q+ + +  +++y+++++++++gg++ r++++kl++gv+i
  CDO68635.1  53 AIQQRAIVPVIKGHDVIAQAQSGTGKTATFSISILQKLD--PNIKGTQALILAPTRELAQQIQKVVVALGDYMNIECHACVGGTNVREDMAKLQEGVQI 149
                 79************************************4..799999**********************************************999*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 vvgtpgr++d+++++ l++++++++ lDEad++l+ gf+d+i ++++ lp       ++ qv++lSAT+p dv 
  CDO68635.1 150 VVGTPGRVFDMINRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLP-------QDTQVVLLSATMPADVL 216
                 *************************************************4.......5567*********8875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
                 HHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH....HTTCSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
        DEAD  63 tlnnlkkfkkyidlrvlliiggvaardqlskl....dngvdivvgtp 105
                   +++ ++  +    v+  ++g+  ++q++ l    ++g   v+ t+
  CDO68635.1 283 LTEKMHQREFT----VS-AMHGDMDQKQRELLmkefRSGSSRVLITT 324
                 44444444432....22.23344444444444221144433333333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.73   1.3e+03      12      49 ..      92     133 ..      83     153 .. 0.59
   2 ?   -0.3   0.0      0.75   1.4e+03      29      74 ..     191     234 ..     159     238 .. 0.65
   3 !  108.8   0.1   9.5e-35   1.7e-31       2     111 .]     254     362 ..     253     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.73
                 HTTTTSEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTT CS
  Helicase_C  12 leeeggkilifvntidrlek....vklllekkgikvavlhge 49 
                  + +g ++li ++t++ +++    v  l    +i++ ++ g 
  CDO68635.1  92 PNIKGTQALILAPTRELAQQiqkvVVALGDYMNIECHACVGG 133
                 556889999999999955443223222322225555555554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.75
                 HHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  29 lek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                 +++ ++ll   ++ +v+ l +++p  + +e+ ++f ++ +++L+  d
  CDO68635.1 191 IYEvFQLL--PQDTQVVLLSATMP-ADVLEVTKKFMRDPVRILVKRD 234
                 33233344..44677766666554.5668888999888888888655 PP

  == domain 3  score: 108.8 bits;  conditional E-value: 9.5e-35
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 kl++l++l+ +++   +++if+nt+++++  ++ + ++++++v ++hg++ q++re  +++f++g+s+vLi+td ++rGid+++v+lVin+dlp+n ++
  CDO68635.1 254 KLDTLCDLY-ETVTITQAVIFCNTRRKVDWlTEKM-HQREFTVSAMHGDMDQKQRELLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 350
                 788999998.9999**************7665555.3448*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 yi+riGR gR+g
  CDO68635.1 351 YIHRIGRGGRFG 362
                 **********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.7e-09     1e-05      23     169 ..      64     211 ..       9     213 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.7e-09
                 TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B--.......-SEEEEEHHHHH CS
      ResIII  23 rdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke.....igkkvsgdkkkakekdstnkkilvttiqsld 115
                 + + ++ ++  GtGKT +  +++ ++l  + k  ++l+l+p+++l +q ++ +  + +  + e      g++v++d  k     ++  +i+v t  ++ 
  CDO68635.1  64 KGHDVIAQAQSGTGKTATFsISILQKLDPNIKGTQALILAPTRELAQQIQKVVVALGDYMNIEchacvGGTNVREDMAKL----QEGVQIVVGTPGRVF 158
                 4557889999********99**********9999***************9666444433322222233555555555555....999************ PP

                 HTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT-....--SEEEEEESS- CS
      ResIII 116 adseeeeeeseellrdrfdviiiDEaHrlgakkswreilekf....keavllglTATp 169
                   +     ++  l+ d+++++  DEa  + +  +  +i e f    ++  ++ l+AT+
  CDO68635.1 159 DMI-----NRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFqllpQDTQVVLLSATM 211
                 999.....88889999999999999999888533333544443334447777788886 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   4.7e-06    0.0084       1      67 [.      55     121 ..      55     207 .. 0.68
   2 ?    3.2   0.0     0.057     1e+02      39      90 ..     264     313 ..     251     344 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.7e-06
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalga 67 
                 q++a+   +k + ++  a  GtGKT +    +   ++ + +k  + l++a+t+  a+++++ + alg 
  CDO68635.1  55 QQRAIVpVIKGHDVIAQAQSGTGKTATFSISILQKLDPN-IKGTQALILAPTRELAQQIQKVVVALGD 121
                 6667766999999999***********987776666555.6679****************99855443 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.057
      AAA_19  39 gvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealel 90 
                 +v   + ++ + t+r ++ l+e++++ +   + +H+   +d ++++  + e+
  CDO68635.1 264 TVTITQAVIFCNTRRKVDWLTEKMHQREFTVSAMHGD--MDQKQRELLMKEF 313
                 456789999***************7777778888866..6666666555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.1e-07    0.0013       5      66 ..      54     116 ..      51     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.1e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKt..talkalreaweaa.ggrviglAptgkaAkvLaeel 66 
                  Q++a+  +++++d  +++++  GtGKt  ++++ l+++  +  g + ++lApt + A+++++ +
  CDO68635.1  54 IQQRAIVPVIKGHD--VIAQAQSGTGKTatFSISILQKLDPNIkGTQALILAPTRELAQQIQKVV 116
                 59999999999998..9**********822457778999999889***************99632 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.1e-05      0.02       4     125 ..      54     202 ..      52     327 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                    HHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH................HHHHCCHHCTT-HH CS
  UvrD-helicase   4 eqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee................alkkaeqessdder 81 
                    +q++ai++   g +++  A  G+GKT++    il++++ + i+ ++ l++  T+  a+ +++ + +                        + d  +
     CDO68635.1  54 IQQRAIVPviKGHDVIAQAQSGTGKTATFSISILQKLDPN-IKGTQALILAPTRELAQQIQKVVVAlgdymniechacvggtN------VREDMAK 142
                    678888886566677778889*******************.*********988888887777766677766666665433331......1222224 PP

                    HHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT................SHTTTEEECHHH CS
  UvrD-helicase  82 lrlalqnlseanisTlHsfcqkilkkeanrig................ldpnfrildeed 125
                    l++  q +  +    ++ ++++ l++++ +i                 + + f++l +++
     CDO68635.1 143 LQEGVQIVVGTPGRVFDMINRRALRTDNIKIFcldeademlsrgfkdqIYEVFQLLPQDT 202
                    444444444444455555555555555555554444444444444444444555555555 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.6e-05       0.1     177     209 ..     146     178 ..     134     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
        CMS1 177 rigiavGtpgRildLleeeslsvdeLkrivlDa 209
                  + i vGtpgR+ d+++  +l+ d++k   lD 
  CDO68635.1 146 GVQIVVGTPGRVFDMINRRALRTDNIKIFCLDE 178
                 48899**********************999985 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   3.7e+03     216     248 ..     213     246 ..     210     262 .. 0.75
   2 ?   11.6   0.0   7.3e-05      0.13      43     118 ..     294     370 ..     277     385 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                   HHHHHHHHHCHCSTTC.SHHHHHHHHHTHHHCHH CS
  tRNA-synt_1b 216 esvkkkiqkavtdsde.evekllklktelsneli 248
                   ++v ++ +k+++d+ +  v++++ ++ +++ + i
    CDO68635.1 213 ADVLEVTKKFMRDPVRiLVKRDELTLEGIKQFYI 246
                   5677888999999999888888888888877433 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.3e-05
                   EEHHHHHTTTTT.-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTH.HHHHHHHHHHTTCBHHHHHHH CS
  tRNA-synt_1b  43 iaDlhAiigdps.kaeerklrkreevlenaikaqlakgldpekaevvlqsewlehl.elaellrdlgklgslnrmlqf 118
                   +  +h+ +++++ +  ++++r+ + ++  +   +la+g+d++++++v++++ + +  +++  + + g++g+    ++f
    CDO68635.1 294 VSAMHGDMDQKQrELLMKEFRSGSSRVLIT-TDLLARGIDVQQVSLVINYDLPTNReNYIHRIGRGGRFGRKGVAINF 370
                   555555555555444455555555444444.89*******************98764788777777777776666665 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.33       7      54 ..      68     117 ..      62     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                 EEEE--TTS-TTTTHHHHHHHHH..HHTT--EEEEESSHHHHHHHHHHTT CS
  Flavi_DEAD   7 tvldlhPGaGktrkvlpelvkea..ierrlrtlvLaPtrvvlaemeealk 54 
                  + ++  G+Gkt  +  +++++     +  ++l+LaPtr  ++ +++ + 
  CDO68635.1  68 VIAQAQSGTGKTATFSISILQKLdpNIKGTQALILAPTRELAQQIQKVVV 117
                 5667889*******999999875224578899*******99998877543 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00036      0.64      12     126 ..      72     207 ..      68     218 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00036
      AAA_22  12 GesGtGKTtllrrlleq.ldeeakaee....................erpevv........fvtlpsstsskdllrellralglelkaerlsseellea 81 
                 ++sGtGKT +      q ld  +k                            +           + ++t+ ++ + +l + ++       ++  +++++
  CDO68635.1  72 AQSGTGKTATFSISILQkLDPNIK--GtqalilaptrelaqqiqkvvV----AlgdymnieCHACVGGTNVREDMAKLQEGVQIVV----GTPGRVFDM 160
                 578888887776544440433333..3447888888877776533330....2455442223334455577777777777777533....469999*** PP

      AAA_22  82 leqalraravielliiDEaqh.lrs....eealeeLrsllnlsrkgvqli 126
                 +++ + +++ i+++ +DEa+  l s    ++++e +  l    +++v l+
  CDO68635.1 161 INRRALRTDNIKIFCLDEADEmL-SrgfkDQIYEVFQLLPQ--DTQVVLL 207
                 ****999999***********66.44563555554455555..5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2751.82
//
Query:       CDO68636.1  [L=584]
Description: hypothetical protein BN946_scf184996.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-60  201.7   0.5    3.7e-60  201.7   0.5    2.3  2  DUF382    Domain of unknown function (DUF382)
    1.8e-17   62.9   4.9    3.8e-17   61.9   4.9    1.6  1  PSP       PSP


Domain annotation for each model (and alignments):
>> DUF382  Domain of unknown function (DUF382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.6      0.22     2e+03      68     122 ..      29      87 ..      17      91 .. 0.55
   2 !  201.7   0.5   4.1e-64   3.7e-60       1     127 []     152     278 ..     152     278 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.22
      DUF382  68 re..aleekeeekslkekarekvqpklgkldidykkLhd.aFfklqt.kPkllkfGdly 122
                 r+  a ++k eek +k++  +  q +  k+++d  +  + +   l    P+l  f d++
  CDO68636.1  29 RRlkAKQKKAEEKVIKKEEINGHQDQDVKMEVDEPQNVEyVSEPLDIkDPSLEAFSDVF 87 
                 33323455556666677776777777777777754333303333333235666666665 PP

  == domain 2  score: 201.7 bits;  conditional E-value: 4.1e-64
      DUF382   1 kkPevvevaDvdakdPvllvklKssknvvpvpshWsskreylsgkrglekkpfelPkfikeTgieelrealeekeeekslkekarekvqpklgkldidy 99 
                 kkPevve++Dv+a+dP+ll +lKs++n+vpvp+hWs+kr+yl+gkrg+ek+pf+lP++i++Tgi+++r+a++eke++++lk+k+re+vqpk+gk+didy
  CDO68636.1 152 KKPEVVEWTDVSAADPRLLLHLKSYRNTVPVPAHWSAKRDYLQGKRGIEKPPFQLPSYIADTGIATMRDAVKEKEANMTLKQKTRERVQPKMGKVDIDY 250
                 58************************************************************************************************* PP

      DUF382 100 kkLhdaFfklqtkPkllkfGdlyyegke 127
                 +kLhdaFfk+ tkP+++ fG++yyegke
  CDO68636.1 251 QKLHDAFFKFMTKPNVTGFGEMYYEGKE 278
                 **************************97 PP

>> PSP  PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   4.9   4.3e-21   3.8e-17       1      46 []     287     332 ..     287     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 4.3e-21
         PSP   1 kPGviSaeLReALglqegqlPpWiykMqrlGlPPgYpklkipGlna 46 
                 +PG++S eL eAL +++ ++PpW++ Mqr+G+PP+Yp l+ipGlna
  CDO68636.1 287 RPGELSPELVEALSIPPLAPPPWLISMQRFGPPPSYPTLRIPGLNA 332
                 8*******************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1286  (0.0717274); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3891.30
//
Query:       CDO68637.1  [L=813]
Description: hypothetical protein BN946_scf184996.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-71  241.0   0.0    2.3e-71  240.5   0.0    1.2  1  HMGL-like   HMGL-like
    5.8e-47  158.9   0.1    2.5e-22   79.2   0.0    2.5  2  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.5   0.0   2.6e-75   2.3e-71       3     264 .]      34     330 ..      32     330 .. 0.96

  Alignments for each domain:
  == domain 1  score: 240.5 bits;  conditional E-value: 2.6e-75
                 EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B.................--EE-SSHHHHHHHHH... CS
   HMGL-like   3 kivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar...............ilalvrarekdikaavealk 86 
                 ++++t+LRDG+q+l+++++v++k   ++ L + g++eiEv  paase+df++vr +++++k+++                ++l  are++ik++vea+ 
  CDO68637.1  34 IWLSTDLRDGNQSLANPMTVAQKHIFFDTLLKCGFKEIEVAYPAASETDFNFVRGLIEQGKIPDdvwiqmlswmlmehcSQVLTPAREDLIKRTVEAVA 132
                 79*************************************************************55555555566566778899999************* PP

                 .TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E..........TTT-BTTTBS--HHHHHHHHHHHHHH........T-SEEEEEE CS
   HMGL-like  87 gagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkd..........velsledasrtdleflaevveaaeea........GatriniaD 167
                 ga+++++h+++at   +++++++ ++e+ +k a+++++ +r+l+++          +e+s+e++s+t++ef++ev+ea+++a          +++n+++
  CDO68637.1 133 GAKKAIIHMYNATCHTFREVVFHNSKEDTVKLAVKHTEIIRKLTEEctakygtqfrYEYSPETFSQTEPEFALEVCEAVKKAwgkaglgdERIIFNLPA 231
                 **************************************************************************************998778999**** PP

                 TTS---HHHHHHHHHHHHHHS-...GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 168 tvGvltPneaaelisalkervk..dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                 tv++  Pn +a+l++ + ++++  +k+i+s+H+Hnd+G+ +a++++A+ aGadrv+g+++G+Ger+Gn++l++l+++l+++gv +g+d++++ ++ ++v
  CDO68637.1 232 TVEIGPPNHYADLVEHFCRNISerEKIIISLHPHNDRGTSIAAAELAILAGADRVEGCLFGNGERTGNVDLVNLALNLYTQGVYPGVDFSDIQAVIDVV 330
                 ***********************9*********************************************************************998876 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   2.8e-26   2.5e-22       1     132 [.     449     602 ..     449     603 .. 0.85
   2 !   77.2   0.0   1.1e-25     1e-21       1     129 [.     660     795 ..     660     798 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 2.8e-26
                 XXXXXXXXXXXXXXXXX....XX--EEEEEEEEEEETT..........CEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE- CS
  LeuA_dimer   1 evtdedlealvkdelle....aeerlkleklqvssged..........elstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvha 85 
                 e+t ed++  +++++       e+rl l+++++ss+ +          e+++   ++ v dg  +++++ GnGp++All+Alr +l++++++ +Ys+h+
  CDO68637.1 449 EMTVEDITNAFRKTYHFggsaYEGRLVLKSYRISSEPSpggladeavdERRQFDGTISV-DGVLRVIRGDGNGPLSALLDALRTHLDINLSVREYSEHT 546
                 578899999999999878887889***********999896666665555555556666.8888*********************************** PP

                 -TT-TT--EEEEEEEE-..-GGGE..........EEEEEEESSHHHHHHHHHHHHHHHH CS
  LeuA_dimer  86 itegtdaqaevrVelev..ddgkk..........vsgvGvdsdiveASlkAlisalnrl 132
                 i+  ++a+a+++Vel                   ++gvGvdsdi e+ l+A++sa+n +
  CDO68637.1 547 IGTDQNAKAASYVELVPqgA---DvkdtrrsaesWWGVGVDSDIAESGLRAVLSAVNSA 602
                 ***************96441...33455667888***********************75 PP

  == domain 2  score: 77.2 bits;  conditional E-value: 1.1e-25
                 XXXXXXXXXXXXXXXXX..XX--EEEEEEEEEEETT.CEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEE CS
  LeuA_dimer   1 evtdedlealvkdelle..aeerlkleklqvssged.elstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaev 96 
                 e++ +dl  l++++++   +e+r+ +++++     d ++s+ +  + + +g+ +  ++eG+Gp++A+++A+++ l+ ++++ +Y +h+i+eg+d++a++
  CDO68637.1 660 EISYDDLVGLFRETYGYyeEEGRFAVKSFKLEHLPDsGRSKLSGSFII-NGKPVALEGEGSGPLSAAVEAVNRGLDGKVSIREYAEHSIGEGSDVKAAS 757
                 67889**********9964559*********98877688999999999.************************************************** PP

                 EEEEE-..-GGGE......EEEEEEESSHHHHHHHHHHHHH CS
  LeuA_dimer  97 rVelev..ddgkk......vsgvGvdsdiveASlkAlisal 129
                 +Ve+ +              +gv++d+di+++ lkA++ a 
  CDO68637.1 758 YVEIAYegP---GgsrkwsGWGVAIDQDITASGLKAVLAAT 795
                 *****7441...33346668999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5832.23
//
Query:       CDO68638.1  [L=258]
Description: hypothetical protein BN946_scf184996.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-08   35.6   0.0      3e-08   34.4   0.0    1.5  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.047   13.9   0.0       0.19   11.9   0.0    2.0  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.4e-12     3e-08       2     173 ..      41     204 ..      40     224 .. 0.60

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.4e-12
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS...HHHHHHHHHHHHHHHHTSEE.EEEC-TTSCHHH.HHHHHHHHHHHH... CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg...dlekellellaalvkypipv.ylllGNHegfee.ellnkygylgif... 91 
                  r+++i+D+H             l+ ++++    d++l+aGDl  +g   dle  +l++++ l +   p  ++++GNH+ ++e + l+  + +++    
   CDO68638.1  41 RFVCISDTH-----------SHLF-HVPPG---DVLLHAGDLSRHGtlkDLEV-TLNWMKGLPH---PAkFFIAGNHD-YDEgGALREIKPKYLRtkd 118
                  677777777...........6666.66555...*************7776666.6666666666...444********.6665555554444444222 PP

                  ..HHHHEHH................HCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC.....HHHHHHHHHHTTCSEEEEE CS
  Metallophos  92 ..sepwrsd................aevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg.....dewlkdlekrekadwvivl 166
                    +                       e   +++ a   sg  kv++++G ++     + + g ++              +e++++     +a ++i++
   CDO68638.1 119 iaA-----ArnlvrshslrkagmfyLEHEHAMYTAK--SG--KVYTIYGSPAAP---FYSTGAFQ--------YctgqgKEIYSR----IPASVDILM 192
                  230.....2233334444443444444445555555..66..788888873333...22222222........233344788888....89999**** PP

                  ESSESS.....C CS
  Metallophos 167 gHsply.....r 173
                  +H p +     +
   CDO68638.1 193 THTPAHgicdlT 204
                  ****99444442 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.19       3      63 ..      42     118 ..      41     181 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
  Metallophos_2   3 laiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepe....vleellela...pvlaVrGNnD..................e 63 
                    ++ iSD+Hs+l+        +     d ++haGDl   ++++    +l++++  +       + GN+D                  +
     CDO68638.1  42 FVCISDTHSHLFH-------VPPG--DVLLHAGDLsRHGTLKdlevTLNWMKG-LphpAKFFIAGNHDydeggalreikpkylrtkD 118
                    6788999955543.......4456..99******9733333312234444444.25877778******6666555433333332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1790.42
//
Query:       CDO68639.1  [L=793]
Description: hypothetical protein BN946_scf184996.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.6e-106  353.5   0.0   1.5e-105  352.6   0.0    1.5  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    2.3e-33  115.5   0.9    4.3e-33  114.6   0.9    1.5  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo
    3.3e-07   30.4   0.0    8.6e-07   29.1   0.0    1.7  1  GST_C           Glutathione S-transferase, C-terminal domain
    1.5e-05   24.9   0.3    3.7e-05   23.6   0.3    1.7  1  GST_C_2         Glutathione S-transferase, C-terminal domain
    0.00044   20.4   0.0      0.003   17.7   0.0    2.3  2  GST_C_3         Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.076   13.1   0.0       0.19   11.8   0.0    1.6  1  DNA_pol_D_N     DNA polymerase delta subunit OB-fold domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.6   0.0  5.1e-109  1.5e-105       1     313 [.     189     511 ..     189     512 .. 0.97

  Alignments for each domain:
  == domain 1  score: 352.6 bits;  conditional E-value: 5.1e-109
                   S-EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE CS
  tRNA-synt_1c   1 kVrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvc 97 
                   +V+tRf+PeP+GyLHiGhakaa+ln++fAk ++Gk+i+R++DT+p++e  e+ee iledl++l+i+  +k+t++sd+fd+l++ya ++ik GkAY +
    CDO68639.1 189 EVVTRFPPEPSGYLHIGHAKAAMLNQYFAKMYKGKMIIRFDDTNPSKERTEFEETILEDLALLDIHG-DKITHTSDYFDQLYEYALQMIKTGKAYAD 284
                   69*****************************************************************.78*************************** PP

                   -STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGG...............SBTTTB CS
  tRNA-synt_1c  98 ectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqe...............ihdlvi 178
                   ++++e++++er +   ++sk+rd ++e+nlk f  em+ g++eg k ++R+ki   ++  ++rD+v++r +l p++                     
    CDO68639.1 285 DTPQEQMRKERWD--GIASKHRDDSVEDNLKHF-AEMTAGSEEGIKWCLRAKISVDNPnKALRDPVIYRTNLLPHHrtgyvisvvmsqcdyRPLSAS 378
                   ***********99..99999*************.79********************9999**************8899*****99999873345678 PP

                   TSTSEEE-HHHHHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHC CS
  tRNA-synt_1c 179 vksdiyPtYdfavvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrl 275
                   +k+++yPtYdfa++i+D++e++th+lrt+e++d++p+y w++ealgl+ p+ i+ ++rln+ +++lSKRkl+++vd+  v++wdd+r+++++++rr+
    CDO68639.1 379 SKWKVYPTYDFACPIVDSIEGVTHALRTNEYRDRNPQYHWMIEALGLR-PVNIWDFSRLNFIYTLLSKRKLHWFVDNGLVRGWDDPRFPTVRGIRRR 474
                   9***********************************************.************************************************ PP

                   TB-HHHHHHHHHHHCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 276 GwtpekerelftreeliksfdlnresksleafdrkkLe 313
                   G+t+e+ r+++ +++ +++  l  e++ l+  ++k+++
    CDO68639.1 475 GLTVEALRQFMLAQGPSQAI-LLLEWDTLWTLNKKVID 511
                   ********************.**************987 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.9   1.5e-36   4.3e-33       1     174 []     514     697 ..     514     697 .. 0.86

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.5e-36
  tRNA-synt_1c_C   1 ApRymaVl..dpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD...akrlkpgeevrLkelynikveevekdesgevte..l 88 
                     ApR++a    + v vt+++ p +k+e  +vp+h+knpe+g++k  + ++i++e+eD   +++ ++  +++L++++n+ v++ + +esg vt   +
      CDO68639.1 514 APRFWALNkvNLVPVTVKGGP-EKPEIKTVPKHKKNPEVGEKKTVYCSQILVEQEDavsFEDNEEHVQITLMDWGNAIVRSKSVNESGVVTGieM 607
                     89*****98899999999888.4899******************************777777777788***********99999*******9445 PP

  tRNA-synt_1c_C  89 kleydgesleearkkkgiihWvsa....eeaveaevrlYdrLfkeee.de....dfllnpdslkvleeglaepalanlkkgdivQfeRiGyfrvd 174
                     +l++dg ++   rk+k++i+W+++    ++ vea++   d+L+++++ +e    +++++p ++   ee+la+ ++++lkkgdi+QfeR+Gy++ d
      CDO68639.1 608 ELHLDG-DF---RKTKKKITWLAQptaeHHLVEATLLDHDYLITKKKlEEnddvKDFVTPVTEFR-EEALADANVRELKKGDIIQFERKGYYIYD 697
                     555555.55...79999******98886677999********774444444445888******97.9*************************987 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.9e-10   8.6e-07      27      92 ..      86     151 ..      82     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.9e-10
                 HHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTS CS
       GST_C  27 alekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimar 92 
                 a++++ ++l+ l+ +l+++++lvG  +t AD  +  +l++  ++ + ++  k+p+l +w++++ ++
  CDO68639.1  86 AFPEITAALDSLDDHLAYRTFLVGHDITAADWIVWGALKGSVKIIGLLKNNKHPHLLRWFSHLESL 151
                 78999**********************************77666666667************9876 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.3   1.3e-08   3.7e-05      10      67 ..      89     145 ..      67     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
                 HCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2  10 qldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 ++ aald l++hLa ++fl G  +t+aD  +++ l     +  g+    ++p+l +W+
  CDO68639.1  89 EITAALDSLDDHLAYRTFLVGHDITAADWIVWGALKGSVKII-GLLKNNKHPHLLRWF 145
                 56799*******************************998887.444557999999996 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06     0.003      30      90 ..      91     152 ..      74     159 .. 0.85
   2 ?   -1.1   0.0      0.72   2.1e+03      19      54 ..     298     335 ..     276     336 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                 HCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH...TCCCC-HHHHHHHHHHHTSH CS
     GST_C_3  30 pkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea...ealkkfpklkalyervearp 90 
                    l+ ++ +l+    ++lvg+ +T AD +++ +l+g  ++    +++k+p+l ++  ++e+++
  CDO68639.1  91 TAALDSLDDHLA--YRTFLVGHDITAADWIVWGALKGSVKIiglLKNNKHPHLLRWFSHLESLE 152
                 556777888888..788***********************99754449******9999988876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHCHHHHHHHHHH..CHGTSSSSTTS-- CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlk..kkgggylvgdklT 54 
                   + + +++ +++ lk+f ++ +  ++g ++++  k++
  CDO68639.1 298 GIASKHRDDSVEDNLKHFAEMTAgsEEGIKWCLRAKIS 335
                 56778899999999999999999733666699999988 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.5e-05      0.19      50     125 ..     529     615 ..     506     617 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.5e-05
  DNA_pol_D_N  50 iykemklkpsvlkeiakedesapqaerkkyvse.....kdellLEDesgrvrLs....gsgieseklv..tGvvvavlGvetengdf 125
                   +k  ++kp++    +++++ +  ++++ y+s+     +d + +ED+++ v+++    g++i  +k v  +Gvv +++ +++ +gdf
   CDO68639.1 529 TVKGGPEKPEIKTVPKHKKNPEVGEKKTVYCSQilveqEDAVSFEDNEEHVQITlmdwGNAIVRSKSVneSGVVTGIEMELHLDGDF 615
                  55666677777666666666777788889998777777********************55555544332357777776666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5199.44
//
Query:       CDO68640.1  [L=107]
Description: hypothetical protein BN946_scf184996.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-05   24.2   0.0    2.9e-05   23.8   0.0    1.2  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.26   11.1   0.0    1.6  1  Retrotran_gag_3  gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.2e-09   2.9e-05       2      45 ..      58     101 ..      57     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.2e-09
  Retrotran_gag_2   2 kkkdakalalIvlsisdsllelvkeektakevWdkLkelyekks 45 
                      + + + al +I lsi+++++e+++++kt  ++W +L ++yek+ 
       CDO68640.1  58 DLQAENALTIIGLSIEPDQYEYIRDAKTGPAAWAALRAVYEKNY 101
                      556789***********************************975 PP

>> Retrotran_gag_3  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     3e-05      0.26      13      30 ..      14      31 ..       3      34 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3e-05
  Retrotran_gag_3 13 vqLdgdNYssWkramrla 30
                     + L+  NY+ Wk+a+ ++
       CDO68640.1 14 PKLNAHNYQDWKFAVQMV 31
                     57999********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.35s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 580.34
//
Query:       CDO68641.1  [L=355]
Description: hypothetical protein BN946_scf184996.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-10   40.9   0.1    5.5e-10   39.3   0.1    1.7  2  ADH_zinc_N    Zinc-binding dehydrogenase
    3.3e-05   23.7   0.1     0.0002   21.2   0.1    2.1  2  ADH_N         Alcohol dehydrogenase GroES-like domain
    7.4e-05   23.8   0.0    0.00015   22.8   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.17   11.7   0.0       0.35   10.7   0.0    1.5  1  DUF2496       Protein of unknown function (DUF2496)


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   1.2e-13   5.5e-10       2      86 ..     172     255 ..     171     272 .. 0.90
   2 ?   -2.2   0.0      0.83   3.7e+03      34      52 ..     290     309 ..     281     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.2e-13
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEE CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpg.Grlv 86 
                 vG++a+qlA+ +G +v+a++s + +++l ++lGa +v++y  + ++v+++k+    + + ++++++   ++   + +++++g G++v
  CDO68641.1 172 VGQFAIQLAALSGYKVVATASPR-NFDLIRSLGAAAVFDY-ADpQVVSKVKATS-RDSIRLALDTISLRESQAISAEIIARGgGKVV 255
                 9*****************98766.7***************.6669*****9888.77************************944444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.83
                 TESEEEETTTC.HHHHHHHH CS
  ADH_zinc_N  34 Gadevinykea.dlverike 52 
                 Gad+++ +++  ++v+ +k+
  CDO68641.1 290 GADHLVRPEDRaHMVQFLKK 309
                 89999999665566666655 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   4.4e-08    0.0002       2      60 ..      35      90 ..      34      98 .. 0.93
   2 ?    0.0   0.0      0.17   7.8e+02      92     104 ..     101     113 ..      89     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.4e-08
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60
                +++l+k+ a++ + +D+++++     + k++ +lG + +G v+ vg++v++ k Gd+ +
  CDO68641.1 35 EDILVKTVAVAQNPTDYKFVDS---GRGKPGTVLGCDWSGHVVRVGKNVTSPKLGDHAA 90
                689*****************98...699****************************965 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.17
                 -SSSBSEEEECGG CS
       ADH_N  92 dGgfaeyvvvpek 104
                 +G+faeyv +p++
  CDO68641.1 101 SGAFAEYVKTPAE 113
                 7*******99976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.4e-08   0.00015       1     127 [.     202     346 ..     202     352 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.4e-08
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-......... CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas......... 84 
                   lGA  v+dy +++++   +at+++++ ++ldt+   +  + s +++ +ggG++v i++ + ++a+ +   +r    +++ +      +         
    CDO68641.1 202 LGAAAVFDYADPQVVskvKATSRDSIRLALDTISLRESQAISAEIIaRGGGKVVHILQVI-PDATTRTDVERIYTLLYWAL------Grefsfgpga 291
                   8*********999999**9999************5555477888898999******9843.33222222222222222222......1223456667 PP

                   ...........-HHHHHHHHHHHHHHH----EEEE..EEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  85 ..........aqadileelaalieeGklrpvvdrv..fpleeaaeAhrylesgra 127
                             +  + l+++  l+++G ++p + +    +l+ +++ ++y+++g++
    CDO68641.1 292 dhlvrpedraHMVQFLKKVPGLVKQGLIKPLPIKLweGGLSSIPDGLQYMREGKV 346
                   7777777778778888999999999999988877633458888888888888765 PP

>> DUF2496  Protein of unknown function (DUF2496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-05      0.35       7      28 ..     225     246 ..     221     249 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.8e-05
     DUF2496   7 devkLAVDLIyLLEsneiepev 28 
                 d+++LA D I L Es  i++e+
  CDO68641.1 225 DSIRLALDTISLRESQAISAEI 246
                 89*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 2085.86
//
Query:       CDO68642.1  [L=260]
Description: hypothetical protein BN946_scf184996.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.005   16.7   0.1      0.032   14.1   0.0    2.4  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-06     0.032       7      42 ..       7      44 ..       3      48 .. 0.79
   2 ?   -2.4   0.0      0.26   4.7e+03      20      32 ..     145     157 ..     139     160 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-06
  F-box-like  7 EiLlqIFsyLpps...dLlrlalVCrrWrrvaldtplLW 42
                EiL qIF y  +    + ++lalV+rr r++  ++++++
  CDO68642.1  7 EILFQIFFYACTDggpTGCSLALVSRRIREAS-RPARFY 44
                9******9963333568************996.555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.26
  F-box-like  20 dLlrlalVCrrWr 32 
                 dL +lal   rWr
  CDO68642.1 145 DLQSLALNHERWR 157
                 4444444444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1822.22
//
Query:       CDO68643.1  [L=330]
Description: hypothetical protein BN946_scf184996.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2497.38
//
Query:       CDO68644.1  [L=94]
Description: hypothetical protein BN946_scf184382.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      117  (0.00652574); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 752.15
//
Query:       CDO68645.1  [L=231]
Description: hypothetical protein BN946_scf184382.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1647.52
//
Query:       CDO68646.1  [L=148]
Description: hypothetical protein BN946_scf184382.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1071.44
//
Query:       CDO68647.1  [L=1006]
Description: hypothetical protein BN946_scf184382.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.8e-133  444.8   0.0   1.5e-132  443.4   0.0    1.5  1  Sec10       Exocyst complex component Sec10
    3.8e-05   23.4   0.1    0.00011   22.0   0.1    1.7  1  F-box       F-box domain
     0.0002   21.2   0.5    0.00057   19.7   0.1    2.0  2  F-box-like  F-box-like
  ------ inclusion threshold ------
        1.5    9.8   5.4       0.25   12.4   0.9    1.9  2  EBP50_C     EBP50, C-terminal


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.4   0.0  3.4e-136  1.5e-132      41     710 ..     203     991 ..     193     992 .. 0.92

  Alignments for each domain:
  == domain 1  score: 443.4 bits;  conditional E-value: 3.4e-136
       Sec10  41 eaaeLiefykeflssgetsklellfkkskdpekklkaAqiarkLlai.skeldelekaentrekiekyaerlEkelLkeFdkayrkedfermkeiAkvL 138
                  a+ L++ +   ls+++   l++lf++   p  + ++A+++r L ++ s ++++l+++  + +++ ++++r+E+ lL +Fd a+ k+d++ m+e+A+  
  CDO68647.1 203 RAHALLKPLLASLSAPPHAVLSNLFPSPAPP--LRRQAHTLRLLSRFlSPDVKPLRNWDTLSSALRAAVDRFEDGLLTAFDVADGKNDEQAMREAAEAS 299
                 5677776665556666669999995554444..88999999999886255666*********************************************7 PP

       Sec10 139 qefngga....svvqlfvnqhdffidkdkldeangiesseiwekladpdeapskveeslqalfseiretvkeeaeiikrVFpnpekVmqtFlqrvfaqv 233
                 +e  +g     +  +++ +++++f+      e+++      w+ l ++++++  +++ +++++ +i ++ +e+ +   rVFp+ ++V+ +F +r+ ++v
  CDO68647.1 300 WEVWDGPgsewELGKVWAEKREIFY------EQSK------WKPLDNFTNDSELDFTAMDEFIADILKALEEHGSRAVRVFPPDANVLLSFAERIANEV 386
                 77766666668**************......4445......88******************************************************** PP

       Sec10 234 iqqrlealLdkassisqlayLraLhslysstlkLvkdLkey.lsteeidgssa.lsalLdqsveelFvpylegdsYlerEkksLeelyaellskFt.tl 329
                 + +++  lL +a++is++ +L+a ++++++++ +v+ + ++ +s++     ++   +  ++ +  +F+p +  d+Yl++E + +++ ++  ++ ++ +l
  CDO68647.1 387 VGEYIMSLLTRAREISNETFLKATAASFKEAWRMVDVIIQLaFSKD-----QNfPRTKAEDIIYRMFEPNM--DEYLDEEIEFVKQSFEMTCRSWEkQL 478
                 *****************************************76664.....4669999*************..***********************777 PP

       Sec10 330 heqsasakslk..................nkvkkklatsfkasls...................................................... 356
                 +e     ++++                   +vk+++++sf ++l+                                                      
  CDO68647.1 479 SEH----RTPAdagppstetarflgshnpAQVKRNVLASFTDVLLlpvtivprtvgkavgaaittgssaavqgiamlnpqrwgagggatggagggafpf 573
                 444....333333446699******************************************************************************** PP

       Sec10 357 ............................................asklaassktkqinraasstlskskkraelketaats..........akaakned 401
                                                             ++++   ++ +++++a+sst  +++++ + +++a ts          +++a+++ 
  CDO68647.1 574 armsswggggrqdgyvrdfekggdgmlfdvgaedeeedpvaekaEEETDGVKRPESVSTARSSTTVSTTQDSSAASNAPTSlpstrvstpiSNSANKPP 672
                 **************************999999999988887776666667778888888888877777777666666666699999999999999**** PP

       Sec10 402 eleeedsllslevaesllkwaaeslgRaveLss.....psevpkaveallelLlsalgkeYvetaLd.aal....aaltaqeiaektevpdls.flevv 489
                  l++ d llsl++a++l++ ++esl+R+ ++s      + +v++ +e++++lLl+alg+++++++++ a++    +++++++   +++v++l  f+e+v
  CDO68647.1 673 GLDNLDLLLSLDTALELIHADRESLKRVETFSGypgayGHRVRDTIEEIFVLLLQALGERHIKPGFEtAIEqmksYKPAEHD---TESVAPLLqFFELV 768
                 *******************************************************************887798888888888...677778877***** PP

       Sec10 490 rsvdliisllqvyiktillpllsdspdirremvkeknsflsrlEekvnaglqktidvvvgeveylls.kqkknDFrpknddlamerqpTeaCkeivefL 587
                 +++d+++s++qvy++++l p++ d++d+++ +v+ek++f+ +l++ v+ gl+++ d+++++ve++++  +k+++++p +d+   e +pTe C e++++L
  CDO68647.1 769 HIGDTMQSMIQVYFDKELAPHI-DKTDFLNTVVREKKRFEDVLDDCVAGGLNAATDALMNQVEHIIMkLTKPREYYPPEDSPL-ELGPTEGCREAIKCL 865
                 **********************.********************************************99********888876.89************* PP

       Sec10 588 ssvhsalkeslsgsnlesflteiGlrlhklLleHlkkftvsseGGlmltkDlneYqdavksfkipelsekFelLrelgnlfiV.qpevlkslvregal. 684
                 +++++ lk+s+s+++le+f++e+G+rl+++L++Hlk++ +s+ GG+++++Dln+Y+++++s+++ +++ +F+ L++lg +++V ++++l+++vr++++ 
  CDO68647.1 866 QMHCQLLKGSTSKEVLEVFYQEVGIRLIAILQKHLKRQIISLNGGFQVIADLNAYHSFITSLRVASITSEFAYLKMLGHVYVVeDAKDLAQIVRDVTRy 964
                 **************************************************************************************************9 PP

       Sec10 685 .akldrelireyiqrReDykkekldne 710
                  ++ ++e+i+e+iqrR+D+kk++++++
  CDO68647.1 965 gGAYRPEDIYEFIQRRSDWKKIEKTVD 991
                 9**********************9986 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.4e-08   0.00011       5      44 ..      63     102 ..      61     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.4e-08
                 HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH CS
       F-box   5 rLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwc 44 
                 rLP +v   IL++L   d+ a +rVS+ + +l ++ r w 
  CDO68647.1  63 RLPVDVHILILSHLAVPDIPAYARVSRALANLARDERVWE 102
                 9************************************995 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.3e-07   0.00057       2      43 ..      62     102 ..      61     104 .. 0.95
   2 ?   -2.7   0.0       1.3   5.7e+03      27      32 ..     470     475 ..     466     480 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-07
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWr 43 
                  rLP ++ + I+s+L   d+ + a+V+r  +++a+d+ ++W 
  CDO68647.1  62 GRLPVDVHILILSHLAVPDIPAYARVSRALANLARDE-RVWE 102
                 69*************999******************9.9996 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
  F-box-like  27 VCrrWr 32 
                 +Cr+W 
  CDO68647.1 470 TCRSWE 475
                 8****6 PP

>> EBP50_C  EBP50, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2         3   1.3e+04      53      74 ..      17      38 ..       9      56 .. 0.43
   2 ?   12.4   0.9   5.5e-05      0.25      32     112 ..     615     696 ..     602     700 .. 0.53

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
     EBP50_C 53 klsssasessassetsleesss 74
                ++s+s++  +a s+  + +++s
  CDO68647.1 17 SSSNSSAPAQAASNRFSLHKPS 38
                2223333333323222222222 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.5e-05
     EBP50_C  32 eksneeeleeeelsell.sksrklsssasessassetsleessskespeaeesakssasdsglgLslslaeakerahqkrak 112
                 ek++ee+   +  ++++  +s ++ s+++ ssa s++ ++  s++ s++ ++sa++    + l+L lsl  a e +h+ r +
  CDO68647.1 615 EKAEEETDGVKRPESVStARSSTTVSTTQDSSAASNAPTSLPSTRVSTPISNSANKPPGLDNLDLLLSLDTALELIHADRES 696
                 22222222222222221022222333333344444444444444444444455578888889****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1006 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 6439.69
//
Query:       CDO68648.1  [L=622]
Description: hypothetical protein BN946_scf184382.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-26   93.4   0.1    1.8e-26   92.6   0.1    1.4  1  ABC1      ABC1 family
     0.0018   18.3   1.5      0.049   13.5   1.4    2.8  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.1     2e-30   1.8e-26       7     118 ..     191     308 ..     182     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 2e-30
        ABC1   7 leeiFaefdeePiAaASiaqVhrAklks....geeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknae 101
                 ++ iF+ f+e++ A+ASiaqVhrAklk+    ++ VavKvq+p+v+k++++Dl  ++ ++ +++++l +l   +  +vd +s+ l++Eldfe E kna+
  CDO68648.1 191 PDGIFDVFEEQAAASASIAQVHRAKLKTddgsEQWVAVKVQKPDVSKQVEWDLGAFRAVMWVYENYLFDLP--VYFVVDFISDHLRRELDFELEVKNAQ 287
                 5789***********************64544559************************************..************************** PP

        ABC1 102 kfrenfaklk....evkvPkv 118
                 ++++ +a+ +    +v++Pkv
  CDO68648.1 288 RTAQFVASEPrladRVHIPKV 308
                 ******999988767999998 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.4   5.5e-06     0.049     152     185 ..     363     401 ..     154     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-06
                 HHHHHHHH--S.....SS-EEEE-SS-SGGGEEEC..TT CS
         APH 152 vlaalaallpg.....elptvllHgDlhpgNllvdpddg 185
                  ++++ +++        ++ +++H+D+hpgN++v+p++ 
  CDO68648.1 363 GAEWVMRTMVElfsaqIFDWGWVHCDPHPGNIIVRPHPR 401
                 444444444444444667899*************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.59
# Mc/sec: 3193.17
//
Query:       CDO68649.1  [L=2227]
Description: hypothetical protein BN946_scf184382.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-80  269.6  24.5      3e-80  269.6  24.5    1.8  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
      1e-25   89.2   5.3    3.2e-25   87.6   5.3    1.9  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    3.3e-25   87.4   6.0    4.2e-13   48.7   2.5    2.9  2  GIT_SHD          Spa2 homology domain (SHD) of GIT
    1.8e-11   44.0   0.0    1.5e-10   41.0   0.0    2.4  2  Cation_ATPase    Cation transport ATPase (P-type)
    1.4e-07   31.2   0.0    4.1e-07   29.7   0.0    1.9  1  E1-E2_ATPase     E1-E2 ATPase
    3.7e-06   27.4   1.2       0.17   12.1   0.0    4.2  3  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0058   16.4   0.1       0.02   14.7   0.0    1.9  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.21    9.5   4.6       0.32    8.9   3.7    1.8  2  V_ATPase_I       V-type ATPase 116kDa subunit family
        1.1    9.7   5.9        7.1    7.1   2.1    3.1  2  DUF3037          Protein of unknown function (DUF3037)
        1.2    8.6  28.0       0.24   10.9  21.5    2.5  2  Golgin_A5        Golgin subfamily A member 5
        5.9    6.2  12.4        2.8    7.2   9.0    2.1  2  FAM76            FAM76 protein


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.1       4.1   6.7e+03     178     224 ..    1344    1396 ..    1329    1420 .. 0.46
   2 !  269.6  24.5   1.9e-83     3e-80       1     248 [.    1901    2152 ..    1901    2153 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.1
  PhoLip_ATPase_C  178 liliililgsillyflfll...lyssllps...ssefygvleelfsspsfwlv 224 
                       +++i+l+ +si++ + + +   ++ss  ++   +  ++g ++e+++++ ++++
       CDO68649.1 1344 FLFIFLLALSIGSTIGSSIrswFFSSQQWYlleQATITGRAKEFIEDILTFII 1396
                       22222222234333333322224444333345556666667777777433333 PP

  == domain 2  score: 269.6 bits;  conditional E-value: 1.9e-83
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +ra+D ai+qFrfLk+LLlvhG wsy R+sk++ly+fyKn+v++++qfw++f+n+fsgq  yesw+l+lyn++ft+lp++v+g+fdq vsa+
       CDO68649.1 1901 ARAADVAISQFRFLKKLLLVHGAWSYTRLSKMLLYSFYKNIVLYMTQFWYSFFNNFSGQIAYESWTLSLYNVVFTVLPPLVIGVFDQFVSAR 1992
                       69****************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfs.dgktndlqlfgtlvftalvlvvnlkvaletktwtliliil 183 
                       +l +yP+lY lgq+n +f+ ++f+ w++++ly+s+i+f +s++++     + +g +++++++gt+ + a++l+v+ k al ++ wt +++++
       CDO68649.1 1993 ILDRYPQLYMLGQRNAFFTRTQFWAWVANALYHSIILFGFSVILFWGDLKQaTGFDSGHWFWGTTLYLAVLLTVLGKAALISDLWTKYTVAA 2084
                       **************************************99999966655556**************************************** PP

  PhoLip_ATPase_C  184 ilgsillyflflllyssllps...ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       i gs+++ +lfl ly  + p    s+e+ g++ +l++++ f++vlllv++v+l++d+++k+++rt+ p
       CDO68649.1 2085 IPGSFVFTMLFLPLYAVVAPAigfSTEYRGIVPRLWTDAVFYFVLLLVPIVCLTRDFVWKYYRRTYMP 2152
                       *************999998889999999999**********************************998 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   5.3     2e-28   3.2e-25       2      67 .]    1078    1141 ..    1077    1141 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 2e-28
  PhoLip_ATPase_N    2 yindreenekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67  
                        +n++++n+  ++++N++sTsKY+++tF+pk+L+eqF+++aNl+FL++a++q+iP++sp++++tti
       CDO68649.1 1078 ALNNPDANA--DFCNNYVSTSKYNVATFVPKFLLEQFSKYANLFFLFTALIQQIPDVSPTNRYTTI 1141
                       689999888..9****************************************************97 PP

>> GIT_SHD  Spa2 homology domain (SHD) of GIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   2.5   2.6e-16   4.2e-13       1      28 [.      73     100 ..      73     101 .. 0.97
   2 !   39.1   0.1   2.5e-13   4.1e-10       1      27 [.     123     149 ..     123     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.6e-16
     GIT_SHD   1 ARqKLarLsnkqFeeLvtDVydEldRRe 28 
                 ARqKL rL+++qF+eL+tDVydEl+RR 
  CDO68649.1  73 ARQKLTRLTRQQFQELSTDVYDELMRRK 100
                 9**************************6 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 2.5e-13
     GIT_SHD   1 ARqKLarLsnkqFeeLvtDVydEldRR 27 
                 ARqKLa+L+  +F++L++DVy+El RR
  CDO68649.1 123 ARQKLATLPTGRFKDLSSDVYYELSRR 149
                 9*************************9 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   9.2e-14   1.5e-10      10      88 ..    1546    1635 ..    1537    1637 .. 0.79
   2 ?   -1.0   0.0       1.2   1.9e+03      10      29 ..    1747    1766 ..    1738    1790 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 9.2e-14
  Cation_ATPase   10 ensekdevkllGnktEsALlvlaekl........gldteelree............tkkvqeipFnssrKrmsvvlklepekkvrlyvKGApei 83  
                     e  + + +    +++E+AL+  ae l                 +            ++++++ +Fns+rKrms+v++  p++k+ l++KGA  +
     CDO68649.1 1546 EVRDGKMRYQASSPDEAALVAGAELLgyqfhtrkP--------KsvfvnvhgqsleYEILNVCEFNSTRKRMSTVVRC-PDGKIKLFCKGADTV 1630
                     6667777888899***********99555555550........3555555555555*********************9.8************** PP

  Cation_ATPase   84 ilkrC 88  
                     il+r 
     CDO68649.1 1631 ILERL 1635
                     **996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
  Cation_ATPase   10 ensekdevkllGnktEsALl 29  
                      n+ ++++ l+G+  E+A+ 
     CDO68649.1 1747 TNDITQVWVLTGDRQETAIN 1766
                     6788999***********85 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.5e-10   4.1e-07       2     131 ..    1169    1354 ..    1168    1414 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.5e-10
                    SS--EEEEE.-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-.......................... CS
  E1-E2_ATPase    2 llpptakvi.rdgteeeidakelvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek.......................... 64  
                    l++++akv+  +gt +e + k++ +GD++ l++ + +paD++++++s+      +++s L GE     k                          
    CDO68649.1 1169 LNSRKAKVLtPEGTFVEKKWKDIAVGDVLRLESDEFIPADVILLSSSEpegfcYIETSNLDGETNLKIKqaspqtsnltspnlvtslhgtlrseh 1263
                    7899*****99**********************************888877889**********9999977777777777777777777777776 PP

                    ..........................G-TTEE-TT-EEEE-E.EEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase   65 ..........................ekgdmvfsGtvvvsge.akavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvllial 131 
                                                 + +  G+++ + + a + V+ tg +t+l + a+   +a  k+t ++++++  + +l+++ l++++
    CDO68649.1 1264 pnnslytyegtlelissggvpkqiplGPDQLLLRGAQIRNTPwAYGLVVFTGHETKLMRNAT---AAPIKRTAVERQVNVHIVFLFIFLLALSI 1354
                    66666666666666666666665555566666666666664424456666666665544333...23344555555555555555555555555 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   3.1e+03     170     189 ..     660     691 ..     630     698 .. 0.59
   2 !    9.6   0.1   0.00065       1.1       2     137 ..    1451    1743 ..    1450    1776 .. 0.66
   3 !   12.1   0.0    0.0001      0.17     173     209 ..    1849    1886 ..    1826    1887 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
                 S............STTTSHHHHHHHHHHHTST CS
                 x............xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 170 t............vakpspegkvaaireLqgk 189
                 +             a+++pe+++ + ++L + 
  CDO68649.1 660 VraferrpqrerdRAEVDPEALQNLRERLDAT 691
                 244555555566899**********9999765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00065
                  SEEEEESBTTTBCHHHHHHH..........HHHHH.............CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE...HHHHT CS
                  xxxxxxxxxxxxxxxxxxxx..........xxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx RF
   Hydrolase    2 ktvvfDkdGTLttgepsved..........vivsa.............alalaaaletgsehpigkalvaaakarsgaltgfatfigrg...ayaig 72  
                  + v+ Dk+GTLt+ e++ +           v+++                +  +al+ g++ p+                      g        + 
  CDO68649.1 1451 EYVFSDKTGTLTRNEMEFRFcsiggvayadVVDEShrgdgdddkeawrSFDDLRALASGAQNPFVDVP------------------GDAgagDEREV 1529
                  56889999999999976666222222222233333333333333333322333333333333333333..................22122211111 PP

                  HHHHHHHH.....HCHHHHHHHHHHHHHHCHHHHHH............................................................. CS
                  xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
   Hydrolase   73 kpewltal.....dippdlgaaigsaqsqgrtvall............................................................. 103 
                    e+lt l      ip+  + ++    s   ++al+                                                             
  CDO68649.1 1530 ANEFLTLLavchtVIPEVRDGKMRYQASSPDEAALVagaellgyqfhtrkpksvfvnvhgqsleyeilnvcefnstrkrmstvvrcpdgkiklfckg 1626
                  1122222244454444444444444444444444445555555555555666667779999999999999999999999999999999999999999 PP

                  ............................................................................TTHHHHHHHHHHTHHBHTTHH CS
                  ............................................................................xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  104 ............................................................................qaralavftiadplkvkpeaa 124 
                                                                                              +  +l+  +i+d+  + +++ 
  CDO68649.1 1627 adtvilerlsenqpftektllhleeyatdglrtlciasrdipeaeyrqwsaiydqaaatingrgealdkaaelierDMFLLGATAIEDK--LQEGVP 1721
                  999999999999999999999999999999999999999999999999999999999999999999999999999999999******99..****** PP

                  HHHHHHHHTTEE.........E CS
                  xxxxxxxxxxxx.........x RF
   Hydrolase  125 eavasLkaagie.........v 137 
                  +++++L+ agi+          
  CDO68649.1 1722 DTIHTLQMAGIKvsyawfnqhR 1743
                  *******999995555555552 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.0001
                  TTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHT CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  173 kpspegkvaaireLq.gkpeevamVGDgvnDaaalaaA 209 
                   +sp +k  +++  +  +++  +++GDg+nD+++++aA
  CDO68649.1 1849 RVSPLQKALVVKLVKkNQKSILLAIGDGANDVSMIQAA 1886
                  578889999999997555778***************99 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       6.4     1e+04     150     182 ..     677     709 ..     675     719 .. 0.79
   2 !   14.7   0.0   1.2e-05      0.02     203     227 ..    1867    1891 ..    1717    1898 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.4
                  -HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEE CS
  Hydrolase_3 150 dkekldelekelksklnklltitssskgyleim 182
                  d+e l++l+++l++ l++l++  +++ ++ ei 
   CDO68649.1 677 DPEALQNLRERLDATLSNLVAAAKTHATSAEIG 709
                  778889999999999999999999999888886 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.2e-05
                   GGGEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3  203 leeviafGDgeNDieMLeaaglgvA 227 
                   ++  +a+GDg ND++M++aa +gv 
   CDO68649.1 1867 KSILLAIGDGANDVSMIQAAHVGVG 1891
                   45579***************99985 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.7    0.0002      0.32      17     119 ..     439     541 ..     416     665 .. 0.69
   2 ?   -3.9   0.0       1.4   2.3e+03     282     320 ..    1582    1620 ..    1577    1639 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0002
  V_ATPase_I  17 dvnafqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakef 115
                 +v++  rk++++ +r+  me++l  l++ +e++++ + + +++ e+l++++++e d   ++ ++ eee+++l+e  e+l+++       +++l + ++ 
  CDO68649.1 439 NVQERGRKWTEDEKRVRAMEEELAELRRRLEEKSNSMLSLQQELETLREERAREKDIAARRQRQNEEEIESLRERCERLEASGDGSSVDSEILDQLRSD 537
                 366666777777777777777777777777777777777777766666666666666666777777777777777777776666666666666555544 PP

  V_ATPase_I 116 leee 119
                 +e  
  CDO68649.1 538 MEGL 541
                 4433 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.4
  V_ATPase_I  282 ewklkvkkekaiyhtLnlfnldvtkkvliaegWvpkeel 320 
                  +++++v+ +   y++Ln++++++t+k +   + +p  ++
  CDO68649.1 1582 SVFVNVHGQSLEYEILNVCEFNSTRKRMSTVVRCPDGKI 1620
                  56677788888899*******999999999998887765 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.1    0.0044       7.1      33     114 ..     446     546 ..     437     549 .. 0.78
   2 ?    2.5   0.1      0.12   1.9e+02      46     103 ..     647     706 ..     621     712 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0044
     DUF3037  33 rleldeaRlralfpel...................dlealeeelkaleeicegekaagpiakldlaerfrwltaprstviqtsevhtgltedpeaeler 112
                 ++++de+R+ra+ +el                   +le+l+ee ++ + i+++++++ ++  ++l+er ++l+a+ +++   se+   l +d+e  l +
  CDO68649.1 446 KWTEDEKRVRAMEEELaelrrrleeksnsmlslqqELETLREERAREKDIAARRQRQNEEEIESLRERCERLEASGDGSSVDSEILDQLRSDMEGLLSE 544
                 78999********99999999999999966666666677777666666666666666666669999****99999988888888888888888888777 PP

     DUF3037 113 Lf 114
                 L 
  CDO68649.1 545 LS 546
                 75 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
     DUF3037  46 pel..dlealeeelkaleeicegekaagpiakldlaerfrwltaprstviqtsevhtglt 103
                 +++  +++a+ e ++a+e++ ++e++  +   + l+++ ++l a+ s+++ + ++h++ +
  CDO68649.1 647 KDVvnAVTAIIEDVRAFERRPQRERDRAEVDPEALQNLRERLDATLSNLVAAAKTHATSA 706
                 4445578999999999999999999988899999******************99998765 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  21.5   0.00014      0.24      50     179 ..     410     541 ..     392     544 .. 0.80
   2 ?    1.1   1.0      0.14   2.3e+02      64     134 ..     532     591 ..     514     598 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
   Golgin_A5  50 delkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekei 148
                 +e ++ r  ++ +++ ++++i  l  +l++++++  + +e  +++++ +ee+l+e r++ ee ++ + +l++el++l+ee  r+k     r ++ e+ei
  CDO68649.1 410 EEQERMRREYEFKIATMQTRITGLERDLENVQERGRKWTED-EKRVRAMEEELAELRRRLEEKSNSMLSLQQELETLREERAREKDIAARRQRQNEEEI 507
                 5555556666677889999999*********9998665555.89******************************************************* PP

   Golgin_A5 149 eklrnq...lttkslsssseselesRlkqLtesL 179
                 e+lr+    l  +   ss +se+ + l++ +e L
  CDO68649.1 508 ESLRERcerLEASGDGSSVDSEILDQLRSDMEGL 541
                 ***9861114444455666677767777666655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
   Golgin_A5  64 qklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrsk 134
                  +l++ +e l +el dl +++            el  + e++ ++ ++++a+l+ +k++ + ++ el+ +k
  CDO68649.1 532 DQLRSDMEGLLSELSDLSRRN-----------DELMAAKENDLATIRDLDAQLKDYKRKYEQAKTELRSVK 591
                 333344444444444443333...........333333333333333333333333333333333333333 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.0    0.0017       2.8     219     277 ..     452     510 ..     403     522 .. 0.76
   2 ?   -2.1   0.1       1.2   1.9e+03     207     242 ..     552     587 ..     518     593 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0017
       FAM76 219 vavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakek 277
                   v  ++ee+a+l+++le+k +++l+ ++++ +l+ e  +++    ++ +++e+e+++ 
  CDO68649.1 452 KRVRAMEEELAELRRRLEEKSNSMLSLQQELETLREERAREKDIAARRQRQNEEEIESL 510
                 56899*******************************99999888777777777665543 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
       FAM76 207 kksldsnssdhlvavtqLkeeiaslkkqleqkdqel 242
                 +++l +++ + l ++ +L  +++  k++ eq  +el
  CDO68649.1 552 NDELMAAKENDLATIRDLDAQLKDYKRKYEQAKTEL 587
                 334444555567778888888888888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1378  (0.0768587); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.68u 0.38s 00:00:02.06 Elapsed: 00:00:00.57
# Mc/sec: 11829.55
//
Query:       CDO68650.1  [L=322]
Description: hypothetical protein BN946_scf184382.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-53  181.0   0.0      1e-52  179.2   0.0    1.7  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   0.0   5.8e-57     1e-52       3     292 ..      20     278 ..      18     280 .. 0.93

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 5.8e-57
                   EEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT- CS
  Aldo_ket_red   3 glGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgt 99 
                   glG w+ gs  +   e a ++ ++al+aG++++DtA  Y    +ee++G+a+ +s+++ree++++tK+        +++++  + es+eesl++Lg+
    CDO68650.1  20 GLGCWM-GS--PGGGEIAEQMCKTALQAGYRHIDTAYGY---GNEEYVGKAIRESGVSREEIFLTTKL--------PNHHHHKVKESFEESLRKLGV 102
                   666663.33..4566778999******************...9*************************........9999***************** PP

                   S-EEEEEE-S--TTS-............HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-E CS
  Aldo_ket_red 100 dyvDllllHrpdpslp...........sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvp 185
                   dyvDl+l+H+p+ +++              e+++ +e l + Gk+r+iGvSnfs++ le ++++  v ++++qve++++  l +  l   c++ g+ 
    CDO68650.1 103 DYVDLYLMHWPQAYTEdnkpipygrspTFVETWKDMEALLDTGKVRSIGVSNFSIKLLEVLLRETDVVPATNQVECHPC--LPSVDLKLWCEQRGIL 197
                   *******************************************************************************..**************** PP

                   EEEBSTTGG.GTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG--- CS
  Aldo_ket_red 186 liaysplgg.Glltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelkl 281
                   + aysplg+ G ++gk             +++          + ++ + ++ak+h+ s+aq+al++ +  ++++ vip++ n+e++++n+  l  +l
    CDO68650.1 198 ITAYSPLGRpGEFDGK-------------PVF----------LDDPSVVSIAKSHNASPAQVALSWGV--KRGTAVIPKSQNPERIKQNITLL--DL 267
                   ********54444443.............443..........78899*********************..9**********************..** PP

                   -HHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldel 292
                   ++ee+a+l+e+
    CDO68650.1 268 TDEEMAALNEI 278
                   ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2205.50
//
Query:       CDO68651.1  [L=415]
Description: hypothetical protein BN946_scf184382.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-05   21.9   0.0    9.1e-05   21.5   0.0    1.1  1  COesterase  Carboxylesterase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.1e-09   9.1e-05     234     319 ..     323     410 ..     292     412 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.1e-09
                 HHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGG..SSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHH CS
  COesterase 234 krakklakkvgckassskelveclrsksaeelldaqek..aleasssklvsfaPvvdgdflpekPeellkseg..kvplliGvnkdegll 319
                    +++ ++ gc  +s++++++clr+ s+e l +a +k  ++++  + ++++  + dg f++e  + ll +    ++p+++G  + eg++
  CDO68651.1 323 GIYDQIVTDSGC--ASANDTLQCLRTVSTEVLKAAMNKspSFVDYVQVNTPWNAHADGVFMTELSQHLLLNGHaaEIPIVVGNDEYEGTH 410
                 567889999***..88899*****************9999777778899*******************999669************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2745.32
//
Query:       CDO68652.1  [L=938]
Description: hypothetical protein BN946_scf184790.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6398.14
//
Query:       CDO68653.1  [L=94]
Description: hypothetical protein BN946_scf184790.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 692.36
//
Query:       CDO68654.1  [L=255]
Description: hypothetical protein BN946_scf184790.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1935.03
//
Query:       CDO68655.1  [L=499]
Description: hypothetical protein BN946_scf184790.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-14   53.8  11.5    1.9e-14   53.3  11.5    1.2  1  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.15   10.9   8.5       0.28   10.0   8.5    1.4  1  MFS_1_like      MFS_1 like family
        2.4    7.4   5.3        3.4    6.9   5.3    1.1  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  11.5   3.2e-18   1.9e-14      21     154 ..      11     144 ..       1     193 [. 0.82

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 3.2e-18
       MFS_1  21 lalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeer 119
                 ++l+ +  +    +   +++++l+++++sl+++ ++ ++ +r vl ++l+++a++++l+  ++s+   +++r+lqG++aga+  a    ++ ++ +++ 
  CDO68655.1  11 EFLSANVSAPFLLFMVEVSTFFLTQFLTSLLWATVAAKHNPRIVLTVSLFGSAITCCLFGTSTSIQQAIAVRLLQGIFAGAIGVAR-GCVTSITDQSNE 108
                 35555555555556668899***********************************33333235555************76666555.667789****** PP

       MFS_1 120 graigllsagfslGailgpllgglla.sslgWravf 154
                 gra+++l+ +++lG + g+++gg +   +  W+++f
  CDO68655.1 109 GRAYAILGFCWGLGGVSGAIVGGTFEsPAKKWPGTF 144
                 ***********************8873444477777 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.5   4.8e-05      0.28     290     372 ..      52     132 ..      13     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.8e-05
  MFS_1_like 290 vklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGl 372
                 + +l+++l+  +++ +l ++ ++   ++ + +L+gi  g++ ++a   v  i+ +s e++  ++l g+++glG+ +G+++GG 
  CDO68655.1  52 RIVLTVSLFGSAITCCLFGTSTSIQQAIAVRLLQGIFAGAI-GVARGCVTSITDQSNEGRAYAIL-GFCWGLGGVSGAIVGGT 132
                 4689999********************************99.888999999*************9.578*************7 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.3   0.00056       3.4     256     300 ..     342     386 ..     302     391 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00056
       NOA36 256 ydaylkalasgddeddegdedddddddeedddeeeddedeeeeee 300
                  ++ + a a ++d+++  ++d++ d+d+edd+e + +   +e++e
  CDO68655.1 342 IADLWVAAAINADNENPFESDEEYDEDDEDDEEANGNTSVDENDE 386
                 445566666666666666666665555555555444444343333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3305.90
//
Query:       CDO68656.1  [L=802]
Description: hypothetical protein BN946_scf184790.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   17.9   0.6     0.0086   16.8   0.6    1.6  1  zf-C2H2_4  C2H2-type zinc finger
  ------ inclusion threshold ------
      0.015   15.7   0.5      0.033   14.6   0.5    1.6  1  zf-C2H2    Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.6   9.6e-07    0.0086       1      23 [.     462     484 ..     462     485 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.6e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++Cp+C+++Fs +++L  Hlk h
  CDO68656.1 462 HRCPFCPRTFSLPNGLAIHLKWH 484
                 68*******************99 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.5   3.7e-06     0.033       1      23 []     462     484 ..     462     484 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++Cp C+++F+ +  L  H++ H
  CDO68656.1 462 HRCPFCPRTFSLPNGLAIHLKWH 484
                 79*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5414.45
//
Query:       CDO68657.1  [L=483]
Description: hypothetical protein BN946_scf184790.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-77  260.8  20.9      4e-77  260.0  17.6    1.9  2  Sugar_tr  Sugar (and other) transporter
    6.1e-15   55.0  47.5    1.1e-13   50.8  22.5    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.1    0.0069        62       4      34 ..      41      70 ..      38      79 .. 0.82
   2 !  260.0  17.6   4.5e-81     4e-77      90     452 .]      81     449 ..      77     449 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0069
                HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT CS
    Sugar_tr  4 vaalggllfgYdtgvigafltllkfaknfgl 34
                + ++++  +gYd  ++++ +++   +knf+ 
  CDO68657.1 41 LLVITSSTNGYDGSLMNSLQSMDT-WKNFFN 70
                6689999*************9998.777765 PP

  == domain 2  score: 260.0 bits;  conditional E-value: 4.5e-81
                 HHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr  90 avlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 +++qaa+    ++ ++i +R+l+G+g+ +a++ +Pm++ E++ +++R + +sly++ +  G +va+++ +g+++++n++ wri+  lq +p++++++l+
  CDO68657.1  81 NAIQAACM---NIHQFIGARFLLGFGLSIATNSAPMLVTEVSYPTYRPQWTSLYNTLWYSGNIVASWTAYGTSRIQNNWSWRIPSLLQGIPSVFQFFLI 176
                 57888998...9*************************************************************************************** PP

                 GGS---HHHHHHTT-HHHHHHHHHH..HHHC...HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHH CS
    Sugar_tr 189 lflPESPrylvekgkeeeakevlak..lrge...edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptif 281
                 +++PESPr+l++kgke +a ++la    +g+   ++++ e++e+k++++  qe++ ++ wk l+ +k++r+r+li++++++f q +G+  + yy  ++f
  CDO68657.1 177 FLVPESPRFLISKGKEAQALRTLAYyhADGDdqdPLVQYEFEEIKAAIKLDQETQkNVGWKALFATKGNRRRMLIIMAIAWFSQWSGNGLVSYYLNKVF 275
                 ***********************996533335568889999999999999999889******************************************* PP

                 HHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS....CHHHHHHHHHHHHHHHTTTTHHHHHHHH CS
    Sugar_tr 282 enlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks.kaasivaivfialfialfalgwgpvpwvlvs 376
                 +++g+++s   ll+t+i+ ++n +  ++a f v+r+GRR l+l++a gm+++f++ +i+ + +  +   +a+ ++i+fi+lf a++ l ++p++  +  
  CDO68657.1 276 DTIGITNStiqLLITGILAIWNLFWAVFASFQVERWGRRFLFLTSAGGMLLFFTLQTICSARYAISPsPSAAHAVIAFIFLFYAFYDLAFTPLIVSYTL 374
                 *********************************************************888888877779****************************** PP

                 HHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 377 ElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 E+ p s+R+k+  +   +  +a ++ +++ pi++++i  +++++v+ + +++ + f ++f++etkgrtlee  +lf
  CDO68657.1 375 EILPYSLRAKGFNVFNLTISIALIFNQYVNPIALKNIA-WKYYIVYCCWLAFEFAFLYIFIIETKGRTLEETAALF 449
                 **************************************.********************************98876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8  22.5   1.3e-17   1.1e-13      83     350 ..      88     398 ..      74     399 .. 0.75
   2 !   18.2  17.0     1e-07   0.00092      25     178 ..     276     439 ..     272     466 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.3e-17
       MFS_1  83 sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla...sslgWravfyilaivsllafvlfllllpeeppe 178
                  ++  ++ +r+l G+g ++++ ++  l+++++ ++ r++ ++l+++ +  G i++   +   +    +++Wr + ++ +i s++ f    l +++++++
  CDO68657.1  88 MNIHQFIGARFLLGFGLSIATNSAPMLVTEVSYPTYRPQWTSLYNTLWYSGNIVASWTAYGTSriqNNWSWRIPSLLQGIPSVFQFF---LIFLVPESP 183
                 33345**************************************************999986662124666**************977...555555555 PP

       MFS_1 179 rkrkspkeee...............................kgtgpaplvp........awkallkdpvlw....illialllfffgfsg...lltllp 231
                 r   s+ +e                                k                 +wkal++ +       +l+i+++ +f  +sg   ++++l 
  CDO68657.1 184 RFLISKGKEAqalrtlayyhadgddqdplvqyefeeikaaiK--------LdqetqknvGWKALFATK--GnrrrMLIIMAIAWFSQWSGnglVSYYLN 272
                 555555555568*********777777777776665555553........044444555899999988..33345577777777766666666999999 PP

       MFS_1 232 lylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt....ssavllllvlvliGfglgfv....fpsl 321
                     ++ g++ +  + +l+ ++la+ +++ a++a++ + r+grr+  l + +++ll++ +  ++++      s++++++v+++i ++++f+    +p++
  CDO68657.1 273 KV-FDTIGITnS-TIQLLITGILAIWNLFWAVFASFQVERWGRRFLFLTSAGGMLLFFTLQTICSARyaisPSPSAAHAVIAFIFLFYAFYdlafTPLI 369
                 96.999999973.55555788888888888************999999999999998888888888888884444444444444444444444459999 PP

       MFS_1 322 lalasdlappeeagtasglfntagslgga 350
                  +++ + +p + +++ + +fn++ s++ +
  CDO68657.1 370 VSYTLEILPYSLRAKGFNVFNLTISIALI 398
                 99999999*************99999865 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1e-07
       MFS_1  25 edlgispseigllltl.yalgaavaslplGrlsdrfGrrrvlllglllfalglllllf..a.......sslw.lllvlrvlqGlga.galfpagaalia 111
                 ++ gi+ s+i+ll+t+  a+  ++ ++++++ ++r+Grr ++l+++ +++l+++l ++  a       +s   +++++ +l  +++  a++p++++++ 
  CDO68657.1 276 DTIGITNSTIQLLITGiLAIWNLFWAVFASFQVERWGRRFLFLTSAGGMLLFFTLQTIcsAryaispsPSAAhAVIAFIFLFYAFYdLAFTPLIVSYTL 374
                 578999******7777588899*************************999994444443314446565555556888888888888799********** PP

       MFS_1 112 dwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 ++ p + r++++ ++++++s++ i+   + ++ + ++ W +  + ++ +++ ++ l    +  e + 
  CDO68657.1 375 EILPYSLRAKGFNVFNLTISIALIFNQYVNPIALKNIAWKYYIVYCCWLAFEFAFL--YIFIIETKG 439
                 ****************************************8877777777776553..333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3335.01
//
Query:       CDO68658.1  [L=1301]
Description: hypothetical protein BN946_scf184790.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-31  109.4   0.6    3.4e-31  108.0   0.0    2.1  2  ATG11      Autophagy-related protein 11
     0.0013   18.1  12.3     0.0013   18.1  12.3    5.3  6  GAS        Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
       0.65   10.0   3.8        7.6    6.6   1.4    3.5  3  THP2       Tho complex subunit THP2
        3.9    6.9   5.4        2.4    7.6   0.1    2.5  2  adh_short  short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ATG11  Autophagy-related protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       2.2   9.9e+03      25      58 ..     564     597 ..     549     608 .. 0.66
   2 !  108.0   0.0   7.6e-35   3.4e-31      15     128 ..     839     945 ..     828     946 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
       ATG11  25 kkekleklqseskekitlknfkvgDLalflptrr 58 
                  ++kl+++q+e +   +l+  + + +al+l  ++
  CDO68658.1 564 LRQKLTQVQEEFEAVKSLEARNAEKVALLLEDQA 597
                 4566666666666666666666666666666655 PP

  == domain 2  score: 108.0 bits;  conditional E-value: 7.6e-35
       ATG11  15 akkltkenkskkekleklqseskekitlknfkvgDLalflptrreeqdlstqpwaafnagaphYfLkeeselal..ksrewlvGrivkieekvvde..k 109
                  +k++k+        +++++++k ki+++nf++gDLalflptr    ++ ++pwaafn++ phYfL+++ +la   k+rew+v+ri++i+e+vvd+   
  CDO68658.1 839 IRKWQKQC-------KEYRERAKGKISFRNFAKGDLALFLPTR----NSVSKPWAAFNVSFPHYFLQATGHLAEqlKTREWIVARITSITERVVDSkdP 926
                 45555555.......556666779*******************....5678****************9998887779******************9667 PP

       ATG11 110 deNpfklskglkwylvkaa 128
                 ++Np+ l +g+k+y+++++
  CDO68658.1 927 STNPYGLGDGVKYYMLEVE 945
                 89**************986 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.25   1.1e+03     105     125 ..     154     174 ..     143     193 .. 0.78
   2 ?   -0.7   0.1      0.17   7.4e+02      34      89 ..     193     248 ..     179     288 .. 0.52
   3 ?   -1.2   7.3      0.24   1.1e+03      73     160 ..     431     521 ..     391     524 .. 0.68
   4 ?    3.1   7.3     0.012        53      29      96 ..     517     587 ..     511     590 .. 0.89
   5 !   18.1  12.3   2.9e-07    0.0013      77     189 ..     593     709 ..     585     712 .. 0.91
   6 !    3.4   1.0    0.0094        42      39      87 ..     703     751 ..     701     774 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.25
         GAS 105 kwehevleqrfekvekerdel 125
                    he l+ rfe+v+++  +l
  CDO68658.1 154 MNTHEDLRSRFEQVQEAMARL 174
                 557999999999999987766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.17
         GAS  34 eieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslkn 89 
                 e e + k++++   ++s i++         +k+ +e+ +L   l+   ++ ++ kn
  CDO68658.1 193 EAEAIAKRAQEIWEKMSSINASSDGPGASAEKVVQELHQLDSSLRLELQHIVDVKN 248
                 44444444444444444444444444444444444444444455544444444444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.24
         GAS  73 Lrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevq...qktglknllLekklkalqeelEk 160
                   + +++     ++l + ++r +e +  ++++ ++ e+l+q+ ++  +e d+ ++  ea i++++   q ++     L + l++++++lE+
  CDO68658.1 431 FDRIAERSLLSSSRLLSHRRRATEDDHAYTEIAMQLEQLRQQKAQEDAEHDRTRAAMEAEIYTLRdslQVSETARGQLDRELHSVRAQLES 521
                 4444455555566788889999999999999999999999999999999999999999998776611155555556688888888888876 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.012
         GAS  29 kslKeeieelkkkeernekelseisqenkrlkepLkkaeeev...eeLrkqlknyekdkqslknlkarlke 96 
                  +l +e++  +  +ern++   e+ ++ ++l   L +a+e+    e+Lr++l + ++++++ k+l+ar+ e
  CDO68658.1 517 AQLESEVNARRILDERNSQMSMEAGSKGQELARALAEATEQAriaERLRQKLTQVQEEFEAVKSLEARNAE 587
                 5799999999999**********************999998533389*******************99865 PP

  == domain 5  score: 18.1 bits;  conditional E-value: 2.9e-07
         GAS  77 lknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaa....iqevqqktglknllLekklkalqeelEkkeaqleevlaa 171
                 l+++ +   +l++++ar ++le ++++ + e++ ++  + ++++e+d+l + + +     +++   +++    +Le + ++l+++lE +e ql+++ a+
  CDO68658.1 593 LEDQANNLRRLEEARARGENLEAQIQAARSESDEVKRALVEASREKDRLLRAQATEhdrlLRDHIAEADGDRAVLEHQFSELRAALEDAERQLKDARAQ 691
                 7788888899***************************************987766545559999999******************************** PP

         GAS 172 anldpaalsavsekleev 189
                 a++  a++  ++e+l++v
  CDO68658.1 692 ADMANADAVGLREELQRV 709
                 **************9987 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.0094
         GAS  39 kkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqsl 87 
                 +++ +r e el ++  + +  +e L++ ++  +e +++l++ e+  ++l
  CDO68658.1 703 REELQRVEHELRDARRDERAVREDLRAGRASQAEYEHRLEESERLVAQL 751
                 6778899999999999999999999999999999999999999887776 PP

>> THP2  Tho complex subunit THP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   1.4e+03      50      93 ..     127     171 ..     104     184 .. 0.74
   2 ?    6.6   1.4    0.0017       7.6      20     107 ..     528     617 ..     512     641 .. 0.81
   3 ?    0.3   0.0      0.15   6.9e+02      53      97 ..     671     717 ..     650     732 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
        THP2  50 sedaeelraklekYldeiKmerakytleNkyl.lkdklkeltkev 93 
                 + +a e  + l +Y+ ++Km ++  +  N +  l+++++++++ +
  CDO68658.1 127 AIEAGERGRTLGDYVSKVKMRQVADSCMNTHEdLRSRFEQVQEAM 171
                 5555556678999*******9988887777743888888877665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0017
        THP2  20 isdeevseivvddekppkelqeilekyeeesedaeelraklekY...ldeiKmerakytleNkyllkdklkeltkevnrWrkewdniEnll 107
                 i de++s++ ++  ++ +el++ l + +e+++ ae+lr+kl++    ++ +K+  a+ + +   ll+d+ ++l + +++ r + +n+E  +
  CDO68658.1 528 ILDERNSQMSMEAGSKGQELARALAEATEQARIAERLRQKLTQVqeeFEAVKSLEARNAEKVALLLEDQANNLRR-LEEARARGENLEAQI 617
                 45899999******************************9987753337789999999999999999999999864.677777777777765 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.15
        THP2  53 aeelraklekYldeiKmerakytleNk..yllkdklkeltkevnrWr 97 
                  +elra le+   ++K +ra+  + N     l+++l+++++e+   r
  CDO68658.1 671 FSELRAALEDAERQLKDARAQADMANAdaVGLREELQRVEHELRDAR 717
                 56777777777778888888888877522457788888877776554 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1   0.00053       2.4      38     110 ..     138     214 ..     114     217 .. 0.76
   2 ?   -0.1   1.6      0.12   5.4e+02      13      79 ..     544     614 ..     540     636 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00053
                 HHHHHHHHHT..TSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHHHHHHHHHHHTH CS
   adh_short  38 eevakelkee..gakalaiqvDvt.dreevealvekavkklgkldvLvnNAGi.tgsgpfselseeewervievNlt 110
                    ++++k    +++ +  + D++   e+v++++++ +   +++  +v+N G  ++ +++++  +e we++ ++N  
  CDO68658.1 138 GDYVSKVKMRqvADSCMNTHEDLRsRFEQVQEAMARLIRGGDEVRHVVTNSGSiEEAEAIAKRAQEIWEKMSSINAS 214
                 5555555555556777788889997789***********************9957777777777777*******976 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSES CS
   adh_short  13 GraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkld 79 
                 G+++a++la++  +  +++r  +kl +v +e+++     +++a  +++ ++d+++  + +e+a+++ ++l+
  CDO68658.1 544 GQELARALAEATEQARIAERLRQKLTQVQEEFEAVksleARNAEKVALLLEDQANNLRRLEEARARGENLE 614
                 899********999999************999987655556677777777777777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1930  (0.107647); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.42u 0.35s 00:00:01.77 Elapsed: 00:00:00.59
# Mc/sec: 6620.60
//
Query:       CDO68659.1  [L=220]
Description: hypothetical protein BN946_scf184790.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1501.35
//
Query:       CDO68660.1  [L=409]
Description: hypothetical protein BN946_scf184790.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-109  366.2   0.0   1.6e-109  366.0   0.0    1.0  1  DUF4419   Domain of unknown function (DUF4419)
  ------ inclusion threshold ------
       0.22   11.6   0.3        1.7    8.7   0.0    2.3  2  PapB      Adhesin biosynthesis transcription regulatory prote


Domain annotation for each model (and alignments):
>> DUF4419  Domain of unknown function (DUF4419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.0   0.0  1.8e-113  1.6e-109       1     302 []      61     388 ..      61     388 .. 0.97

  Alignments for each domain:
  == domain 1  score: 366.0 bits;  conditional E-value: 1.8e-113
     DUF4419   1 ngfveavleAyaehlhLvlrPDdvWlaIltqlsfyvnanaeelrslfvahegkkelevkaeekle..dweelakelteeiqknvkdpslrdwilpdFsT 97 
                 ngfv++vleAya+h+hLvlrPDdvW+aIltqlsfyvna+aeelr++fvahegkkel v+a ++++  d++ l +++t+ei++nv+d++l dwilpdFsT
  CDO68660.1  61 NGFVRTVLEAYASHRHLVLRPDDVWMAILTQLSFYVNAHAEELREYFVAHEGKKELIVEAVGNRYsvDFGYLSRRMTREIHENVVDSTLVDWILPDFST 159
                 8*********************************************************99999999********************************* PP

     DUF4419  98 ttetdkvvaavllmatlkkyfeykvsllCGiPsvtLlGekeDWekllerlekLkefgeelkewaklLrpildrfvesfdepdseenkeFWnkivkeese 196
                 tt++d++v+av++m+tlk+yf y + l+CGiP++tLlG+++DW+ ll+rl++L  +g e+++wa++Lrpil+rfv+ fd+p+++ +  FW+++v+++se
  CDO68660.1 160 TTTKDRTVSAVIMMSTLKEYFVYGFVLTCGIPTITLLGTQDDWQALLRRLDRLPMLGAEPAAWAQMLRPILRRFVDVFDNPEQP-DLGFWRSVVHKHSE 257
                 **********************************************************************************99.9**********998 PP

     DUF4419 197 egsgeselsGWitaFcvydkdgkvleeekkeeeeeeseeee.......................alvldgveypeidtddipsglasvpvkldedngke 272
                  g+ge+ lsGW+taFcv+d++g +++ +  e +e +++ +e                       + +ldgv+y  i+++dip+g+++v+v+++ dng +
  CDO68660.1 258 -GCGEDVLSGWVTAFCVWDHKGVWKAGKLPERPEVHRDGKEnaagkqeanlgrvdidrrfrsrrEYMLDGVQYFTIRVQDIPAGYCEVDVTVN-DNGVR 354
                 .9**********************999988888777766667999******************9889*************************9.999** PP

     DUF4419 273 yelelvaGsvGvkvsseee....dtlqpvsgWal 302
                  ++ ++aG+v+ kv ++e+    +tl p+++W++
  CDO68660.1 355 LDCNMIAGHVASKVLRSEPdgekNTLTPSAQWFI 388
                 ***************99889999*********97 PP

>> PapB  Adhesin biosynthesis transcription regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00019       1.7      45      84 ..     102     144 ..      92     151 .. 0.80
   2 ?   -0.3   0.0      0.13   1.1e+03      43      53 ..     173     183 ..     166     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
        PapB  45 alrdylVkGvsrke.....vCeryevnqgYlsislkrlqkisqav 84 
                  lr+y+V    +ke     v +ry+v  gYls  ++r  +i+++v
  CDO68660.1 102 ELREYFVAHEGKKEliveaVGNRYSVDFGYLSRRMTR--EIHENV 144
                 599****999998755555789**********99987..455555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.13
        PapB  43 inalrdylVkG 53 
                 + +l++y+V G
  CDO68660.1 173 MSTLKEYFVYG 183
                 568******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2839.89
//
Query:       CDO68661.1  [L=349]
Description: hypothetical protein BN946_scf184790.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-06   27.2   6.8    0.00034   20.9   1.6    3.2  2  FlaC_arch        Flagella accessory protein C (FlaC)
    4.4e-06   26.8   1.9    4.4e-06   26.8   1.9    2.8  2  XhlA             Haemolysin XhlA
    2.3e-05   24.1   0.5    2.3e-05   24.1   0.5    2.2  1  MscS_porin       Mechanosensitive ion channel porin domain
    0.00011   22.2   8.4     0.0007   19.7   8.4    2.1  1  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
    0.00015   22.2  13.7      0.034   14.6   0.4    3.1  3  DUF16            Protein of unknown function DUF16
      0.002   18.3   1.3      0.002   18.3   1.3    2.5  3  CREPT            Cell-cycle alteration and expression-elevate
     0.0023   16.2   1.4     0.0046   15.2   0.4    1.9  2  EzrA             Septation ring formation regulator, EzrA
     0.0032   17.4   0.8     0.0032   17.4   0.8    3.2  2  Prefoldin_2      Prefoldin subunit
     0.0038   16.9   8.4        0.2   11.3   0.0    3.1  3  Med4             Vitamin-D-receptor interacting Mediator subu
     0.0053   17.2   2.6     0.0053   17.2   2.6    2.7  2  Snapin_Pallidin  Snapin/Pallidin
     0.0064   16.7   0.1     0.0064   16.7   0.1    3.1  2  ABC_tran_CTD     ABC transporter C-terminal domain
     0.0077   16.8   2.8      0.035   14.7   0.2    2.4  2  ING              Inhibitor of growth proteins N-terminal hist
     0.0077   15.6   5.2     0.0093   15.3   0.5    2.0  2  FAM76            FAM76 protein
  ------ inclusion threshold ------
      0.018   14.4   4.1       0.09   12.1   0.2    2.2  2  DUF4407          Domain of unknown function (DUF4407)
      0.019   15.3   1.8      0.019   15.3   1.8    1.9  1  DUF5082          Domain of unknown function (DUF5082)
      0.022   14.9   9.6      0.068   13.3   2.5    3.0  4  DUF2730          Protein of unknown function (DUF2730)
      0.022   13.9   3.5      0.034   13.2   3.5    1.3  1  Roughex          Drosophila roughex protein
      0.028   14.1   0.2       0.48   10.1   0.0    2.2  2  DUF4988          Domain of unknown function
      0.033   14.3   5.5       0.37   10.9   1.6    2.4  2  TRPM_tetra       Tetramerisation domain of TRPM
      0.038   14.1   4.4        1.4    9.1   0.7    2.4  2  bZIP_1           bZIP transcription factor
      0.038   14.3   3.8       0.15   12.3   3.5    2.1  1  DUF4164          Domain of unknown function (DUF4164)
      0.049   13.9   5.8        2.7    8.4   0.2    2.6  2  BLOC1_2          Biogenesis of lysosome-related organelles co
      0.059   13.2   3.5       0.43   10.4   2.3    2.6  2  CdvA             CdvA-like coiled-coil domain
      0.062   12.3   7.4       0.13   11.2   2.1    2.2  2  IFT57            Intra-flagellar transport protein 57
      0.065   11.9   4.6       0.02   13.5   0.9    1.8  2  AAA_13           AAA domain
       0.09   13.1  16.8        0.2   12.0   1.8    3.4  2  CLZ              C-terminal leucine zipper domain of cyclic n
        0.1   12.8  10.4        0.3   11.3   5.5    2.4  2  Fib_alpha        Fibrinogen alpha/beta chain family
       0.15   10.6   4.3       0.16   10.4   3.8    1.4  1  FUSC             Fusaric acid resistance protein family
       0.15   12.5   8.2        1.2    9.6   0.1    3.0  2  LPP              Lipoprotein leucine-zipper
       0.21   11.6   0.4       0.49   10.4   0.4    1.7  1  PuR_N            Bacterial purine repressor, N-terminal
       0.21   12.1  11.1       0.37   11.3   0.2    3.0  2  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.22   11.1  13.9       0.22   11.1   6.5    2.9  3  DUF4795          Domain of unknown function (DUF4795)
       0.24   10.8  13.2      0.084   12.2   4.3    2.9  2  Tropomyosin      Tropomyosin
       0.36   11.0  15.4       0.77    9.9   0.4    3.1  3  Tropomyosin_1    Tropomyosin like
       0.39   11.0  14.2       0.47   10.7   1.7    2.9  3  DUF948           Bacterial protein of unknown function (DUF94
       0.43   10.3  10.0        1.4    8.7   2.8    3.2  3  Lectin_N         Hepatic lectin, N-terminal domain
       0.62    9.5   7.5      0.024   14.1   1.3    1.8  1  DegS             Sensor protein DegS
       0.68    7.8  10.5      0.082   10.8   2.0    2.0  2  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.89    9.6   7.5        1.2    9.2   3.2    2.6  2  DUF1515          Protein of unknown function (DUF1515)
        1.2    9.0  10.1      0.055   13.3   3.7    2.0  1  Mer2             Mer2
        1.3    8.9   3.2         18    5.2   0.6    2.7  2  DASH_Dam1        DASH complex subunit Dam1
        1.4    9.4  16.1        1.1    9.6  12.9    2.3  1  CCDC53           Subunit CCDC53 of WASH complex
        1.4    9.2  13.3         14    6.1   5.5    2.9  2  OmpH             Outer membrane protein (OmpH-like)
        1.6    9.1  10.6         13    6.1   0.1    2.8  2  Siah-Interact_N  Siah interacting protein, N terminal
        1.6    8.6   7.1        0.8    9.6   4.8    1.6  1  Suf              Suppressor of forked protein (Suf)
          2    7.5   8.9       0.12   11.5   2.2    2.2  2  DLP_helical      Dynamin-like helical domain
        2.1    8.2  14.0        7.1    6.5   1.0    3.1  3  Ax_dynein_light  Axonemal dynein light chain
        2.2    6.6   4.7         13    4.0   4.2    1.9  2  Hemagglutinin    Haemagglutinin
        2.6    8.1  14.9       0.18   11.8   1.9    2.9  2  DUF1664          Protein of unknown function (DUF1664)
        3.4    7.2  11.0        6.5    6.3  11.0    1.4  1  Spt20            Spt20 family
        4.2    7.7   8.7       0.35   11.1   1.2    2.7  3  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
        4.4    7.5  13.1        2.8    8.1   0.1    3.6  3  DUF2802          Protein of unknown function (DUF2802)
        4.8    7.9  11.2        7.3    7.3   1.1    3.2  3  YabA             Initiation control protein YabA
        4.8    5.0   8.2       0.23    9.4   2.4    1.6  2  Prominin         Prominin
        5.7    6.1   5.9       0.83    8.8   1.2    1.8  2  TMPIT            TMPIT-like protein
        6.6    7.2  17.6       0.35   11.3   0.2    3.5  2  DASH_Dad2        DASH complex subunit Dad2
        6.9    6.8   8.7        5.5    7.1   1.2    2.3  2  CPSF100_C        Cleavage and polyadenylation factor 2 C-term


Domain annotation for each model (and alignments):
>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3     0.018       5.7       1      28 [.     117     144 ..     103     160 .. 0.83
   2 !   20.9   1.6   1.1e-06   0.00034       1      40 [.     174     213 ..     174     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.018
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsk 28 
                 ++del  k++ ls++++t+ ++++e  k
  CDO68661.1 117 KVDELAVKVDTLSVKVNTLSENFDEHVK 144
                 7899999999999999999888776544 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.1e-06
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVkdl 40 
                 r+++lE+++ kl+t+++ ++++++++s++++ + ++ + +
  CDO68661.1 174 RLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTV 213
                 899********************************98776 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.075        24       4      35 ..     116     147 ..     101     160 .. 0.79
   2 !   26.8   1.9   1.4e-08   4.4e-06       2      48 ..     164     210 ..     163     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.075
        XhlA   4 erlerietkldnleervdkleekaaeaeekik 35 
                 +++ ++  k+d+l+ +v++l e+ +e+ +k++
  CDO68661.1 116 KKVDELAVKVDTLSVKVNTLSENFDEHVKKSE 147
                 67778888888888888888888888877766 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.4e-08
        XhlA   2 ikerlerietkldnleervdkleekaaeaeekiknleedlkklesnq 48 
                 ++ r + ++t+l++le+r++kle ++++ e++  n+ +dlk + +++
  CDO68661.1 164 MENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTL 210
                 67788889***********************************9986 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.5   7.2e-08   2.3e-05      30     138 ..     109     212 ..     103     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 7.2e-08
  MscS_porin  30 dkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqr 128
                 +++++ +kk +el  ++d+   ++ +l+++ ++      ++s+ ++a+l +  ++ r  + ++++  + ++l++l+++ ++l+tr++++ +q+++++  
  CDO68661.1 109 ATTQATDKKVDELAVKVDTLSVKVNTLSENFDEH----VKKSERSFANLGSMMINLR-GDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDD 202
                 5789999***************************....9999999999999999988.577899*********************************** PP

  MscS_porin 129 lqeirnrLns 138
                 l++ir+ Ln 
  CDO68661.1 203 LKAIRQTLNT 212
                 *******986 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   8.4   2.2e-06    0.0007      32     130 ..     111     213 ..      92     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-06
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnl..dlgal 123
                   +  +  + +d+++ ++++ls +++ l++++d+   + + +++nL + + +l  +++n++t +++ l++L + +t +++ ++ l + + n+  dl a+
    CDO68661.1 111 T-QATDKKVDELAVKVDTLSVKVNTLSENFDEhvkKSERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMsdDLKAI 206
                   3.55667888899999999999999999999844433456788888999999999999999999999999999999999999988888885555566 PP

  Baculo_PEP_C 124 sqeleda 130
                    q+l++ 
    CDO68661.1 207 RQTLNTV 213
                   6666655 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.3    0.0008      0.25      39      85 ..     100     147 ..      91     163 .. 0.80
   2 !   14.6   0.4   0.00011     0.034      31      81 ..     163     213 ..     155     222 .. 0.85
   3 ?    3.4   1.9      0.33     1e+02      59      79 ..     296     316 ..     264     340 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0008
                 HHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HH CS
       DUF16  39 ieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln.kvdetl 85 
                 i a+v++l+   ++  +kv+++  k++ l+v++++ +e+++ +v+++ 
  CDO68661.1 100 ITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDeHVKKSE 147
                 678899999999999999999999999999999999999985344443 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 0.00011
                 .BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
       DUF16  31 snkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkv 81 
                 + ++r++ +++++++l+ ++ kle  ++k++ ++++++ + ka ++ ln+v
  CDO68661.1 163 DMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTV 213
                 567889999999999999999999999999999999999999999988865 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHH... CS
       DUF16  59 kqgekikelkveqkaqgeeln 79 
                 + +++ +e++++q++q+++ +
  CDO68661.1 296 HEEQQDEEQQEQQEQQQQQPQ 316
                 222222222222222222222 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       1.3     4e+02      85     118 ..     104     137 ..      83     141 .. 0.51
   2 !   18.3   1.3   6.4e-06     0.002      43     146 ..     136     236 ..     113     237 .. 0.88
   3 ?   -0.7   0.2       4.7   1.5e+03      88      95 ..     304     311 ..     265     334 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 1.3
       CREPT  85 leaqkellakaeekleelkeklekvksvrkelks 118
                 ++++ ++ + +++k++el  k+++++ + ++l +
  CDO68661.1 104 VASLEATTQATDKKVDELAVKVDTLSVKVNTLSE 137
                 3334444555566666666666666666666655 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 6.4e-06
       CREPT  43 keeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklekvksvrkelkshiqsLPdLtelpdvtgglapLPs 141
                 +e+ ++++k+ e + + l   +  L  ++e+R ++    ++ l+ + ++++k e+++++l++++++++   k ++++++    L + p+ +++ apLP 
  CDO68661.1 136 SENFDEHVKKSERSFANLGSMMINLRGDMENRMTIV---DTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTVFILVQNPNASSSAAPLPH 231
                 57788999999999999***************8765...55677788899999********************************************** PP

       CREPT 142 agdLF 146
                   +LF
  CDO68661.1 232 GTQLF 236
                 *9999 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 4.7
       CREPT  88 qkellaka 95 
                 q+e+ +++
  CDO68661.1 304 QQEQQEQQ 311
                 11111111 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   1.5e-05    0.0046     307     419 ..     103     213 ..      96     231 .. 0.75
   2 ?   -1.4   0.0       1.6   4.9e+02     310     358 ..     266     314 ..     258     325 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
                 TSSSSSHHHHT--HHHHTTGGG-TTTS-G.GGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 307 nlkelkeklehlekqnkelkeeldrlkqs.YeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslks 404
                 ++++l+   + ++k+++el  ++d l+ +  +Lse+  e++++ e+ + +l +++ +l+ ++e++    + +  +l++le +++++e++  ++++++++
  CDO68661.1 103 RVASLEATTQATDKKVDELAVKVDTLSVKvNTLSENFDEHVKKSERSFANLGSMMINLRGDMENRM---TIVDTRLNTLETRMTKLETRMTKLETQMSN 198
                 556677777778888888888888887542578888888888888888888888888888888876...457778888888888888888888888888 PP

                 HHHHHHHHHHHHHHH CS
        EzrA 405 lrkdEkrAreqldei 419
                 + +d k  r++l+++
  CDO68661.1 199 MSDDLKAIRQTLNTV 213
                 888877777777665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
                 SSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHH CS
        EzrA 310 elkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelek 358
                  +++++ h+ + ++ l+++++++      ++ee +  ++ e++ ++ ++
  CDO68661.1 266 AFSRFMAHVAQGVHRLEHDVEDVAGGGAVTHEEQQDEEQQEQQEQQQQQ 314
                 5778888888888888888888888888888888887777766665554 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4      0.33     1e+02      60      98 ..     107     145 ..     104     153 .. 0.75
   2 !   17.4   0.8     1e-05    0.0032      63     100 ..     174     211 ..     154     214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  60 keevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  +e +++  +++ ++l  +++tl+ +  +l ++++e+ ++
   CDO68661.1 107 LEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKK 145
                  677777788888888888888888888888888877655 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  63 vkeeLeerketlekeiktlekqleklekeleelkeelq 100
                   +++Le+r+ +le+++++le q++++  +l+ ++++l+
   CDO68661.1 174 RLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLN 211
                  34566666666666666666666666666666666666 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.032       9.9      27      69 ..     100     144 ..      98     160 .. 0.82
   2 !   11.3   0.0   0.00064       0.2      28      64 ..     179     218 ..     173     255 .. 0.82
   3 ?    1.7   2.8      0.58   1.8e+02     161     191 ..     295     318 ..     265     324 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.032
        Med4  27 nearilqLraeveslDekikeivksLkeyekeLkavp..dqensk 69 
                 + ar+ +L+a +++ D+k+ e++ ++ ++  +++++   ++e  k
  CDO68661.1 100 ITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSenFDEHVK 144
                 578999**************************9999855444433 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00064
        Med4  28 earilqLraeveslDekikeivksLkeyekeLkavp...d 64 
                 e+r+++L+ ++ +l+++++++   Lk +++ L++v    +
  CDO68661.1 179 ETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTVFilvQ 218
                 789******************************9985432 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.58
        Med4 161 eeeerkseeaegrreeeerakeeedeleake 191
                 ++ee++       +ee+++++e++++++++e
  CDO68661.1 295 THEEQQ-------DEEQQEQQEQQQQQPQQE 318
                 222222.......333333333333333333 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   2.6   1.7e-05    0.0053      10      89 ..     106     185 ..     101     193 .. 0.81
   2 ?    1.5   0.3       1.3   4.1e+02      64      83 ..     188     207 ..     185     213 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-05
  Snapin_Pallidin  10 llepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLv.nikkrmsslnerlqklkkRaekL 89 
                       le + +++d+k+ el  + + L+ ++++l+e+++e  +  e  ++++l +    L+  +++rm+ + +rl++l+ R++kL
       CDO68661.1 106 SLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSE-RSFANLGSMMINLRgDMENRMTIVDTRLNTLETRMTKL 185
                      6889999***************************97655555.78888888887776358888888888888888888887 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 1.3
  Snapin_Pallidin  64 KLvnikkrmsslnerlqklk 83 
                      ++++++ +ms++++ l+ ++
       CDO68661.1 188 RMTKLETQMSNMSDDLKAIR 207
                      45555555555555555555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.7   2.2e+02      13      52 ..     100     141 ..      97     152 .. 0.61
   2 !   16.7   0.1     2e-05    0.0064       9      40 ..     174     202 ..     172     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.7
  ABC_tran_CTD  13 leaeIeaLEeeiaeleaeladpelysdp..eklaelsaelee 52 
                   + a+ ++LE+  ++ ++++ + ++  d    k++ ls+  +e
    CDO68661.1 100 ITARVASLEATTQATDKKVDELAVKVDTlsVKVNTLSENFDE 141
                   566677777777777777766665555555556666655555 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2e-05
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysdp 40 
                   +l +le ++ +LE+++++le+++++ +   d+
    CDO68661.1 174 RLNTLETRMTKLETRMTKLETQMSNMS---DD 202
                   6899********************875...33 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   0.00011     0.035       8     101 .]      92     192 ..      85     192 .. 0.82
   2 ?    2.0   0.2         1   3.2e+02      34      74 ..     278     318 ..     250     324 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 0.00011
                 SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......TS..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTX CS
         ING   8 svenLPlelqrnltelreiDakvqellkeidskiekfl.......kngslqknekeeelsriqeelkeaqelldeKiqlaqqaldlvdkhlrrLdqdle 99 
                 + ++LP+ ++ ++  l +  + + + ++e+  k+++++       +n +++ +++e++++++ ++++++    ++ ++++++ l++++ ++ +L++ ++
  CDO68661.1  92 MTSSLPEGITARVASLEATTQATDKKVDELAVKVDTLSvkvntlsENFDEHVKKSERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMT 190
                 667888888888888877766666666666666666666666877888888999999999************************************998 PP

                 XX CS
         ING 100 kl 101
                 kl
  CDO68661.1 191 KL 192
                 86 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 1
                 HHHHHHHHHHHHTS..S-HHHHHHHHHHHHHHHHHHHHHHH CS
         ING  34 lkeidskiekflkngslqknekeeelsriqeelkeaqelld 74 
                 ++++++ +e++   g+ +++e+++e ++ q+e+++ q+ ++
  CDO68661.1 278 VHRLEHDVEDVAGGGAVTHEEQQDEEQQEQQEQQQQQPQQE 318
                 45555666666644444444444444444444444444443 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5     3e-05    0.0093     183     297 ..      87     201 ..      62     204 .. 0.79
   2 ?    2.6   0.4      0.23        73     160     181 ..     299     319 ..     279     347 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3e-05
       FAM76 183 ssrlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkele...keakeki 278
                 + r+++++   e+++   +s e++++++d+++ +  v+v  L  ++++l  +    d+++ + ++  ++l + +++ + +++++++ ++   ++ ++++
  CDO68661.1  87 PDRSSMTSSLPEGITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENF---DEHVKKSERSFANLGSMMINLRGDMENRMTIVDtrlNTLETRM 182
                 3344444444455666666777778899*********************8766...7889999*********************98655111677899* PP

       FAM76 279 eklekkirellkevaelsk 297
                 +kle+++++l  +++++s 
  CDO68661.1 183 TKLETRMTKLETQMSNMSD 201
                 ************9999875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.23
       FAM76 160 kkskekskekkaskkkskkhkk 181
                 +++ e+++e++++++++ ++++
  CDO68661.1 299 QQD-EEQQEQQEQQQQQPQQEQ 319
                 111.111111222222222222 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00028      0.09     124     230 ..      93     207 ..      81     225 .. 0.49
   2 ?    3.4   0.6      0.13        41     217     237 ..     299     319 ..     255     337 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00028
     DUF4407 124 keqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake...........kkaqldaaqaelaelkakld.ata 210
                 +++l +  ta++a lea ++a ++++d++  ++d+l  +++   ++ + +    v+  + ++ +            ++ ++  +++l++l+++++  ++
  CDO68661.1  93 TSSLPEGITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSEN-FDEH---VKKSERSFANlgsmminlrgdMENRMTIVDTRLNTLETRMTkLET 187
                 3444445677777777777777777777777777777777744443.3222...333333333322222223333222222222222222222222333 PP

     DUF4407 211 rlaalraelaeleaeraker 230
                 r+++l+++++ + ++++++r
  CDO68661.1 188 RMTKLETQMSNMSDDLKAIR 207
                 34444444444333333333 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
     DUF4407 217 aelaeleaerakeraasqaaa 237
                 ++ +e ++++++++++ q+++
  CDO68661.1 299 QQDEEQQEQQEQQQQQPQQEQ 319
                 111111111111111111111 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.8   5.9e-05     0.019      10     120 ..     102     212 ..      98     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.9e-05
     DUF5082  10 aqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLenqiseaq 108
                 a++a+l+++ +a+++k+ +L    ++ls + ++l+++  +  k+   s +  G+   n  g+ +n  + ++t    l++ + ++e+  ++Le+q+s+++
  CDO68661.1 102 ARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMS 200
                 6899*****************9889999999999988888888888888889*********************************************** PP

     DUF5082 109 gvldtlqsqlns 120
                  +l+ + + ln+
  CDO68661.1 201 DDLKAIRQTLNT 212
                 ******999985 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1       0.1        31      72      96 ..     104     128 ..      84     138 .. 0.62
   2 ?    4.5   0.3      0.12        37      36      59 ..     105     128 ..     100     169 .. 0.73
   3 ?   13.3   2.5   0.00022     0.068      41      88 ..     167     212 ..     155     218 .. 0.73
   4 ?   -1.4   0.0       7.7   2.4e+03      63      79 ..     276     292 ..     274     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.1
     DUF2730  72 ladlrgelkaleaevrqlshqvdLL 96 
                 +a l++ ++a++++v++l+ +vd L
  CDO68661.1 104 VASLEATTQATDKKVDELAVKVDTL 128
                 4444455555555555444444433 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.12
     DUF2730  36 eklaekveendkrlteletkvenL 59 
                 ++l+ + + +dk+++el +kv++L
  CDO68661.1 105 ASLEATTQATDKKVDELAVKVDTL 128
                 445555566666666666666665 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.00022
     DUF2730  41 kveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrq 88 
                  ++  d+rl++let++ +L t+  + kL+++++++  +lka+++++++
  CDO68661.1 167 RMTIVDTRLNTLETRMTKLETR--MTKLETQMSNMSDDLKAIRQTLNT 212
                 3455678888888888888665..788888888888888888888776 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 7.7
     DUF2730  63 kdlekLkllladlrgel 79 
                 + +++L+ +++d+ g  
  CDO68661.1 276 QGVHRLEHDVEDVAGGG 292
                 67899999999999864 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.5   0.00011     0.034     279     314 ..     296     331 ..     239     343 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
     Roughex 279 keedkdeqeqqaeqeeqaqq.qaeeapvssdistalk 314
                 +ee++de eqq +qe+q+qq q e+ p++  ++t+ +
  CDO68661.1 296 HEEQQDE-EQQEQQEQQQQQpQQEQQPAAGPATTTVQ 331
                 3444443.34444444433323444455444444433 PP

>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.51   1.6e+02      10      33 ..     102     125 ..      98     154 .. 0.60
   2 ?   10.1   0.0    0.0015      0.48       1      35 [.     178     211 ..     164     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.51
     DUF4988  10 drvaaleeqvkelndniealkkll 33 
                  rva+le+++++ +++++ l+  +
  CDO68661.1 102 ARVASLEATTQATDKKVDELAVKV 125
                 566666666666666666554322 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0015
     DUF4988   1 leddvndlkdrvaaleeqvkelndniealkkllee 35 
                 le ++ +l+ r++ le+q++++ d+++a+++ l +
  CDO68661.1 178 LETRMTKLETRMTKLETQMSNMSDDLKAIRQTL-N 211
                 567788889999999999999999999998877.2 PP

>> TRPM_tetra  Tetramerisation domain of TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1      0.11        35       6      30 ..     113     137 ..     111     141 .. 0.87
   2 ?   10.9   1.6    0.0012      0.37      14      55 ..     164     205 ..     162     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.11
  TRPM_tetra   6 vttERvEnmsmkveevneKenlika 30 
                 +t  +v+++ +kv+ ++ K+n+  +
  CDO68661.1 113 ATDKKVDELAVKVDTLSVKVNTLSE 137
                 57889****************9876 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0012
  TRPM_tetra  14 msmkveevneKenlikaSLqsldfrLgkLedlsaltvdtLkv 55 
                 m  ++  v+ + n+ ++ +++l++r+ kLe  +  + d Lk 
  CDO68661.1 164 MENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKA 205
                 778899999*********************999999998876 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2      0.04        12      26      57 ..     116     147 ..     103     149 .. 0.86
   2 ?    9.1   0.7    0.0044       1.4      31      60 ..     178     207 ..     172     212 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.04
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  26 aeieeLerrvkaLekeNksLkseleelkkeve 57 
                 ++++eL+ +v++L+ +  +L++  +e  k++e
  CDO68661.1 116 KKVDELAVKVDTLSVKVNTLSENFDEHVKKSE 147
                 56899999999999999999999988777665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0044
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  31 LerrvkaLekeNksLkseleelkkevekLk 60 
                 Le+r+ +Le+ +++L  ++++++++ +  +
  CDO68661.1 178 LETRMTKLETRMTKLETQMSNMSDDLKAIR 207
                 555555555555555555555555544444 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.5   0.00048      0.15      10      86 ..     125     213 ..     106     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00048
     DUF4164  10 ltrLeaaldsLEkavdrrleaerkr............deleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaaietirav 86 
                  + L+ ++++L +  d+++++ +              +++e++++ ++   + L+ ++++ e r ++le   +  s++Lka  +t+++v
  CDO68661.1 125 VDTLSVKVNTLSENFDEHVKKSERSfanlgsmminlrGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTV 213
                 56677788888888888888777777888888888989***********************************************9998 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0085       2.7      17      58 ..      99     140 ..      89     148 .. 0.80
   2 ?    7.1   1.2     0.021       6.7      13      55 ..     166     208 ..     154     219 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0085
     BLOC1_2  17 atvedyklLeklNeaasekykklkdvaaslekkleklnekye 58 
                 + ++ +  Le+  +a+ +k+++l+ +++ l++k++ l+e  +
  CDO68661.1  99 GITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFD 140
                 566778889999999999999999999999999999988554 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.021
     BLOC1_2  13 aeleatvedyklLeklNeaasekykklkdvaaslekkleklne 55 
                 + ++++ + +++Le+  ++ +++ +kl++++++++++l+++++
  CDO68661.1 166 NRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQ 208
                 4455555555555555555555555555555555555555544 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.15        46      25      67 ..     119     161 ..     104     166 .. 0.69
   2 ?   10.4   2.3    0.0014      0.43      26      67 ..     152     193 ..     119     204 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.15
        CdvA  25 ekleealkklkekakelkeklkkrlkeledqikslekalanlk 67 
                  +l  ++++l  k ++l+e+ ++++k+ e   ++l + ++nl+
  CDO68661.1 119 DELAVKVDTLSVKVNTLSENFDEHVKKSERSFANLGSMMINLR 161
                 4555566777777777777777777777777777777777765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0014
        CdvA  26 kleealkklkekakelkeklkkrlkeledqikslekalanlk 67 
                 +l++ +  l+ ++++    ++ rl++le  +++le+ +++l+
  CDO68661.1 152 NLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLE 193
                 344445555555555555555555555555555555555555 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.1   0.00041      0.13     237     343 ..     108     212 ..      97     221 .. 0.57
   2 ?    4.0   0.3     0.065        20     152     185 ..     290     320 ..     247     338 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00041
       IFT57 237 eeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplv 335
                 e++++ t +++++l  +++    k+++  ++ ++ ++++ + + ++   + +++ +++++ + v  + ++l++  ++le+  +++e + s+m+D   l 
  CDO68661.1 108 EATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDD--LK 204
                 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555554..33 PP

       IFT57 336 kikkaltk 343
                  i+++l++
  CDO68661.1 205 AIRQTLNT 212
                 55555554 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.065
       IFT57 152 eeelikseeededeedeeeelklesekkeekeke 185
                    ++++e   e++++e++e++ +++++ ++e++
  CDO68661.1 290 GGGAVTHE---EQQDEEQQEQQEQQQQQPQQEQQ 320
                 33333333...23333322222222222222222 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.9   6.5e-05      0.02     326     439 ..      96     210 ..      73     219 .. 0.75
   2 ?   -0.6   0.1       1.3   3.9e+02     107     121 ..     300     314 ..     253     338 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-05
      AAA_13 326 lkaeaealeeqLkglqraleaKrkepfksvelesvkaki..esikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykkle 422
                 l + + a  ++L++  +a ++K++e++ +v++ svk ++  e++ + v++ +++ a+   ++ nl  + e+  + +   +++ le  ++++++ + kle
  CDO68661.1  96 LPEGITARVASLEATTQATDKKVDELAVKVDTLSVKVNTlsENFDEHVKKSERSFANLGSMMINLRGDMENRMTIVDT-RLNTLETRMTKLETRMTKLE 193
                 555556666789999999999999999999988877777668899999999999999999999998887775555544.77778888888888888888 PP

      AAA_13 423 kaieklekelkeeeael 439
                 ++++++ ++lk++ + l
  CDO68661.1 194 TQMSNMSDDLKAIRQTL 210
                 88888888888776655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
      AAA_13 107 kleekleaaeaqlqk 121
                 + ee+ e++e+q+q+
  CDO68661.1 300 QDEEQQEQQEQQQQQ 314
                 111111111111111 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     0.001      0.33      20      60 ..     105     145 ..      99     155 .. 0.84
   2 ?   12.0   1.8   0.00063       0.2      29      62 ..     171     204 ..     159     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.001
         CLZ  20 akagaeqkeleekverLessLeaLqtrlarLlaeyessqrk 60 
                 a+ +a+ + +++kv++L  ++++L  +++ L +++++  +k
  CDO68661.1 105 ASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKK 145
                 667889999**********************9999887766 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00063
         CLZ  29 leekverLessLeaLqtrlarLlaeyessqrkLk 62 
                 ++++++ Le+++  L+tr+ +L ++++++   Lk
  CDO68661.1 171 VDTRLNTLETRMTKLETRMTKLETQMSNMSDDLK 204
                 5677888888888888888888888888777776 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.5   0.00095       0.3      26     126 ..     107     204 ..      99     212 .. 0.85
   2 ?    3.8   0.2      0.19        61      29      90 ..     270     338 ..     263     344 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00095
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124
                 l+ + + ++k++++l  +++++s    ++++l+++ ++ +++ ++s ++  +++ +++ ++e++++ ++ ++++ e+++ +L + + ++e +++++  d
  CDO68661.1 107 LEATTQATDKKVDELAVKVDTLSV---KVNTLSENFDEHVKKSERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDD 202
                 666778889999999998888765...56667778899999999999988999999******99999999999999**********9999999999887 PP

                 HH CS
   Fib_alpha 125 id 126
                  +
  CDO68661.1 203 LK 204
                 65 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.19
                 CCCCCCHHHCCCCCCCCCCC.......CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
   Fib_alpha  29 yekdvkkdlekleneleeis.......nstkeaeelvkeikdslrekqkskkdndnvikksskeleeei 90 
                    +v + +++le+++e+++       +++++ e+  ++ +++ +++q++++    +++ +++++ ++i
  CDO68661.1 270 FMAHVAQGVHRLEHDVEDVAgggavthEEQQDEEQQEQQEQQQQQPQQEQQPAAGPATTTVQTMIGQHI 338
                 556677778888888887761111111233333333333344444444444444667777777776665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.8   0.00052      0.16     214     342 ..     168     298 ..     127     330 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00052
        FUSC 214 irararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrrale...adadtaalllarlae 309
                 +     +l+ l +rm+ l +++ +l++++ ++++  +a +++l +++  +++  +a +++a+  + ++l + + ++++ ++   ++++ ++++++ l++
  CDO68661.1 168 MTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTVFILVQNP-NASSSAAPLPHGTQLFHPAPNTHATASapnLPSQSSRRVWRPLRS 265
                 44456899***************************999999999999999985.445555555555555555555555555566779999999999999 PP

        FUSC 310 llael.aqllaslraleaaiaaarraerlarhrd 342
                  ++++ a++ + +++le++ ++  + +++++h +
  CDO68661.1 266 AFSRFmAHVAQGVHRLEHDVED-VAGGGAVTHEE 298
                 998852689999*******998.55555555544 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0037       1.2       1      25 [.     117     141 ..     117     151 .. 0.85
   2 ?    7.2   0.1     0.021       6.7       2      31 ..     182     211 ..     181     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0037
         LPP   1 kldeLssqVsqLkskvdqlssdvns 25 
                 k+deL+  V +L+ kv+ ls++ ++
  CDO68661.1 117 KVDELAVKVDTLSVKVNTLSENFDE 141
                 89******************99654 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.021
         LPP   2 ldeLssqVsqLkskvdqlssdvnsakaaaq 31 
                 +++L +   +L+++++++s+d++++++ ++
  CDO68661.1 182 MTKLETRMTKLETQMSNMSDDLKAIRQTLN 211
                 7889999999***********999998766 PP

>> PuR_N  Bacterial purine repressor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4    0.0015      0.49       4      50 ..     166     212 ..     164     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0015
       PuR_N   4 eRlvaitkiLlenPnklisltyfaerfeaAKSsiSeDlaiikealek 50 
                 +R++ + ++L +   ++++l++ + ++e+  S +S+Dl++i+++l++
  CDO68661.1 166 NRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNT 212
                 688888888999999999**************************985 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.2     0.028       8.9      14      43 ..     112     138 ..     104     156 .. 0.72
   2 ?   11.3   0.2    0.0012      0.37      21      66 ..     169     211 ..     158     230 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.028
     NPV_P10  14 kavddkVdalqqqvddvqenlpdvtelnek 43 
                 +a+d+kVd l  +vd ++ ++++++   e+
  CDO68661.1 112 QATDKKVDELAVKVDTLSVKVNTLS---EN 138
                 5777777777777777777766633...33 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0012
     NPV_P10  21 dalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                 + ++++++ +++ + +   l++++ ++ +q+ ++++ +++I ++Ln
  CDO68661.1 169 TIVDTRLNTLETRMTK---LETRMTKLETQMSNMSDDLKAIRQTLN 211
                 4444444444443333...444444444444555555555555554 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.5   0.00069      0.22      31     149 ..      84     203 ..      76     211 .. 0.47
   2 ?    8.5   1.1    0.0045       1.4       9      48 ..     175     214 ..     168     223 .. 0.76
   3 ?    1.3   0.9      0.71   2.2e+02       6      50 ..     268     312 ..     263     324 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00069
     DUF4795  31 kelekrledkekklealkkqieelekvkadkeeveeelaekadkeaLatkvsrdqfDeakkeLekmleellekleeqeealkkaldtLq...eelkekl 126
                 ++l++r++ +++  e+++  +  le + +  ++  +ela+k+d+  ++  +  ++fDe +k+ e+ +  l +++ +   +++  +  +    + l++++
  CDO68661.1  84 HSLPDRSSMTSSLPEGITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSERSFANLGSMMINLRGDMENRMTIVDtrlNTLETRM 182
                 556666666666666666666666666666666666666666666666666666666666666666655555544444444444444332232222222 PP

     DUF4795 127 drlelepLkeqleerlkelqkel 149
                  +le     ++le ++ ++++ l
  CDO68661.1 183 TKLETRM--TKLETQMSNMSDDL 203
                 2222111..11222222222222 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0045
     DUF4795   9 lkklqeaieklqeelekleekvkelekrledkekklealk 48 
                 l+ l+  ++kl++++ kle ++++++++l++ ++ l++++
  CDO68661.1 175 LNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTVF 214
                 6677788888888888888888888888888888777765 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.71
     DUF4795   6 aellkklqeaieklqeelekleekvkelekrledkekklealkkq 50 
                 ++ + ++ + +  l+ ++e++ +  + ++++++d+e++ +  ++q
  CDO68661.1 268 SRFMAHVAQGVHRLEHDVEDVAGGGAVTHEEQQDEEQQEQQEQQQ 312
                 667889999999999999999888888888777777776655555 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.3   0.00027     0.084     135     219 ..     124     209 ..     112     214 .. 0.77
   2 ?    1.2   1.0      0.63     2e+02      86     108 ..     297     319 ..     278     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00027
  Tropomyosin 135 raeaaeskiveLeeeLk.vvgnnlksLevseekaseredeyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekek 219
                  ++++   k++ L e++   v+++ +s         + + ++e+++  + ++L + e+R  + E +++kLe +++++ d+l+a ++ 
   CDO68661.1 124 KVDTLSVKVNTLSENFDeHVKKSERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQT 209
                  66666677777777774246666677777777777778889999999999999999999999999999999999999999988775 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.63
  Tropomyosin  86 relkdeekleeleaqlkeakeia 108
                   e++dee+ e++e+q ++ ++ +
   CDO68661.1 297 EEQQDEEQQEQQEQQQQQPQQEQ 319
                  57888888888888888766654 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.7    0.0073       2.3      19      68 ..     100     149 ..      90     156 .. 0.85
   2 ?    9.9   0.4    0.0024      0.77      26      62 ..     171     207 ..     156     216 .. 0.41
   3 ?    1.2   1.9       1.2   3.9e+02     122     140 ..     296     314 ..     276     322 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0073
  Tropomyosin_1  19 leekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaees 68 
                    + ++v +le ++++ ++++ +L  k+++l  +v++l+e+  e+ +k+e s
     CDO68661.1 100 ITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSERS 149
                    56777889999999999999999999999999999999999998888765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0024
  Tropomyosin_1  26 leqenlekeqeiksLtkknqqleeevekleeklkeak 62 
                     + +    e  +++L++++ +le ++ +++++lk  +
     CDO68661.1 171 VDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIR 207
                    2222333333333333333333333333333333333 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 1.2
  Tropomyosin_1 122 qerdewekkyeeleekyke 140
                    +e++++e++ e++e+++++
     CDO68661.1 296 HEEQQDEEQQEQQEQQQQQ 314
                    4455555555555555444 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7    0.0015      0.47      27      78 ..     103     154 ..      98     162 .. 0.85
   2 ?    7.3   2.1     0.018       5.7      25      79 ..     165     219 ..     149     226 .. 0.64
   3 ?   -0.5   0.0       4.7   1.5e+03      25      46 ..     268     289 ..     260     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0015
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteava 78 
                  + +++at + + k+vd++  +v++l  kvn+l e+  e+++k ++ +++++
  CDO68661.1 103 RVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSERSFANLG 154
                 5678899999999999999999999999999999999999999888887765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.018
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 ++ ++ + +++++le +++++ + +++l +++ ++ +d++   +++++++  v++
  CDO68661.1 165 ENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNTVFILVQN 219
                 5556666666777777777777777777777777777777777777766666655 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 4.7
      DUF948  25 kktldeaaatieelekqvdpil 46 
                 ++ + ++a+ ++ le++v+ + 
  CDO68661.1 268 SRFMAHVAQGVHRLEHDVEDVA 289
                 6778888888888888887765 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.16        50      79     125 ..      90     136 ..      76     140 .. 0.74
   2 ?    8.7   2.8    0.0045       1.4      54     122 ..     129     211 ..     125     217 .. 0.61
   3 ?    2.9   0.1      0.28        87      58     105 ..     261     309 ..     252     325 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.16
    Lectin_N  79 ssqggslsekvtsleaklekkqqdlkadhselllhvkqlvkdLrtLs 125
                 ss ++sl e +t   a le   q+ ++   el ++v +l++ ++tLs
  CDO68661.1  90 SSMTSSLPEGITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLS 136
                 55667777777777777777777777777888888888888888876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0045
    Lectin_N  54 qreLetLketfsnfssstlaeiqalss..............qggslsekvtsle...aklekkqqdlkadhselllhvkqlvkdLr 122
                    ++tL+e+f++  ++ +  + +l s                  ++ ++++le   +kle +  +l+++ s++ + +k +++ L+
  CDO68661.1 129 SVKVNTLSENFDEHVKKSERSFANLGSmminlrgdmenrmtI---VDTRLNTLEtrmTKLETRMTKLETQMSNMSDDLKAIRQTLN 211
                 566789999999999999999999999888877766663331...33333333311134444445555555555555555555555 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.28
    Lectin_N  58 etLketfsnfssstlaeiqalss......qggslsekvtsleaklekkqqdlka 105
                 + L+ +fs f +++   ++ l+            +  vt  e + +++qq+ ++
  CDO68661.1 261 RPLRSAFSRFMAHVAQGVHRLEHdvedvaG----GGAVTHEEQQ-DEEQQEQQE 309
                 67999****************994433331....2233333333.333333222 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.3   7.7e-05     0.024      34     146 ..     102     214 ..      97     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.7e-05
        DegS  34 keleelkeevsevikevdklekkerkarkrLaeVskdFkkyseeeikeaYeeakelqvelallrekEkqlrerR.delerrLkklketierAeklvsqv 131
                   ++ l+ +++ + k+vd+l+ k      +  + s +F+++ ++  ++ + +  ++ ++l    e+ +++ + R + le r++kl++ + + e+ +s++
  CDO68661.1 102 ARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKS-ERSFANLGSMMINLRGDMENRMTIVDTRlNTLETRMTKLETRMTKLETQMSNM 199
                 56778889999999**************************99776.6678999999999998888877766544499********************** PP

        DegS 132 gvvlnyLsgdlkqvs 146
                 +  l+ +++ l+ v 
  CDO68661.1 200 SDDLKAIRQTLNTVF 214
                 999999999998875 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   0.00026     0.082       9     101 ..     123     212 ..     100     227 .. 0.56
   2 ?    2.0   1.5      0.12        39     666     692 ..     297     323 ..     261     340 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
  V_ATPase_I   9 vqfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelne 101
                 v++  l+ +vn+++ +f ++v++ +   r++  l + + +l+  + +++++++++ ++ e+++ +le++++kle++++++++ l++++++ln+
  CDO68661.1 123 VKVDTLSVKVNTLSENFDEHVKKSE---RSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNT 212
                 3334444455555555555555543...33333333333333444444444555566666666666666666666666666666666655554 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
  V_ATPase_I 666 eeeaeeeeeeeeeeeeeeeeeeeeeee 692
                 ee+++ee++e++e+++++ ++e++   
  CDO68661.1 297 EEQQDEEQQEQQEQQQQQPQQEQQPAA 323
                 112222222222222222333333333 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.89   2.8e+02      36      61 ..     112     137 ..      80     148 .. 0.69
   2 ?    9.2   3.2    0.0038       1.2      16      69 ..     156     209 ..     141     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.89
     DUF1515  36 akmyrkmdelvervtalegsvvklka 61 
                     +k+del  +v +l   v +l +
  CDO68661.1 112 QATDKKVDELAVKVDTLSVKVNTLSE 137
                 34456777777777777766666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0038
     DUF1515  16 evkelredlkrsedrsdasrakmyrkmdelvervtalegsvvklkaditsvkev 69 
                  + +lr d+ +     d+    +  +m +l  r+t le+ ++++ +d+ ++++ 
  CDO68661.1 156 MMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQT 209
                 5668888888888888888889999**********************9999876 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.7   0.00018     0.055     116     193 .]     112     186 ..      98     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00018
        Mer2 116 kkhksntdtksnLtellekkeakileeidkkqtkleksvdttqelllnvnkQledvnevllSlskdlenlstrqtale 193
                 + ++++ d+  + +++l+ k + ++e++d++ +k e+s   + ++++n+   +e+    +  +++ l++l+tr t+le
  CDO68661.1 112 QATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSERSFANLGSMMINLRGDMEN---RMTIVDTRLNTLETRMTKLE 186
                 4455555555666789999******************************976665...55557888888888887775 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.23        74       4      38 ..     117     152 ..     114     162 .. 0.80
   2 ?    5.2   0.6     0.057        18       2      24 ..     179     201 ..     164     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.23
   DASH_Dam1   4 afaeLaDsletLdknledLq.qihesLsdfNeSFas 38 
                 +  eLa +++tL+ +++ L+ + +e++++  +SFa 
  CDO68661.1 117 KVDELAVKVDTLSVKVNTLSeNFDEHVKKSERSFAN 152
                 677899999999999999962578888888888885 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.057
   DASH_Dam1   2 epafaeLaDsletLdknledLqq 24 
                 e ++ +L+  +++L+++++++++
  CDO68661.1 179 ETRMTKLETRMTKLETQMSNMSD 201
                 34455555555555555555444 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  12.9    0.0036       1.1      17      98 ..     176     324 ..     163     338 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0036
      CCDC53  17 tecEekLvevekrlqrleitlalLEakLsSip.gleeveaeaaeastsddn................................................ 66 
                 +  E++++++e+r+++le++++ +   L++i  +l++v   +++ ++s+++                                                
  CDO68661.1 176 NTLETRMTKLETRMTKLETQMSNMSDDLKAIRqTLNTVFILVQNPNASSSAaplphgtqlfhpapnthatasapnlpsqssrrvwrplrsafsrfmahv 274
                 45688888888888888888888888888888545555544444444444489********************************************** PP

      CCDC53  67 ..................aarkgppppppsseaaaaaaqaeeasqaeesa 98 
                                   a +++++++++++e++++++q+++++q+++  
  CDO68661.1 275 aqgvhrlehdvedvagggAVTHEEQQDEEQQEQQEQQQQQPQQEQQPAAG 324
                 99998876655555444422222333332233333332222222222222 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.9     0.044        14      19      49 ..     180     210 ..      85     219 .. 0.58
   2 ?    6.1   5.5     0.043        14      67     103 ..     299     335 ..     279     340 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  19 aaqeqlekkfkklqaeleakekelqklqeel 49 
                 + +++le+  +kl++++ ++ ++l++ +++l
  CDO68661.1 180 TRMTKLETRMTKLETQMSNMSDDLKAIRQTL 210
                 2233333444444444444444444333333 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  67 kkeqelqqkqqqkaqelqkkqqellkpildkinkaik 103
                 ++ +e q++q+q++q+ q++qq +  p +  +++ i 
  CDO68661.1 299 QQDEEQQEQQEQQQQQPQQEQQPAAGPATTTVQTMIG 335
                 3344444444555588999999988888888887775 PP

>> Siah-Interact_N  Siah interacting protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.043        13      30      73 ..     186     232 ..     181     235 .. 0.83
   2 ?    3.7   6.9      0.24        76      41      73 ..     299     329 ..     294     334 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.043
  Siah-Interact_N  30 saeirKleteilklkekqkakaqqksq...lleeekpaasvapitkg 73 
                      +    Klet ++++++ +ka  q+ ++   l+++ + ++s+ap   g
       CDO68661.1 186 ETRMTKLETQMSNMSDDLKAIRQTLNTvfiLVQNPNASSSAAPLPHG 232
                      55578****************99999998878888888888887765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.24
  Siah-Interact_N  41 lklkekqkakaqqksqlleeekpaasvapitkg 73 
                      ++ +e+q++++qq++q+ +e++paa   p+t++
       CDO68661.1 299 QQDEEQQEQQEQQQQQPQQEQQPAAG--PATTT 329
                      45556667777777776677777776..44443 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.8    0.0026       0.8     153     258 ..     206     325 ..     161     347 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0026
         Suf 153 knldpikkrelksetkqeeekallqkkeeqaaslees...............................kvpqaqeskkrklesedssvkkPdklqmves 220
                                                     +                               +++   + ++ + +s++ +v +P +++++++
  CDO68661.1 206 IRQ---------------------------------TlntvfilvqnpnasssaaplphgtqlfhpapNTHATASAPNLPSQSSR-RVWRPLRSAFSRF 270
                 222.................................1334444433333333444444444444433233333344444443333.4788888888887 PP

         Suf 221 pk.................kgaagrrleqqrksessksaeaasksqkalqqqpap 258
                  +                  g+a  ++eqq ++++++++++++++q+++q  + p
  CDO68661.1 271 MAhvaqgvhrlehdvedvaGGGAVTHEEQQDEEQQEQQEQQQQQPQQEQQPAAGP 325
                 7789999999999998666444444444444444444444444334333333333 PP

>> DLP_helical  Dynamin-like helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.2   0.00039      0.12      40     120 ..     133     212 ..     126     217 .. 0.76
   2 ?   -1.3   0.4       3.1   9.7e+02      87      98 ..     302     313 ..     268     334 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00039
  DLP_helical  40 eeLqdateekikknggelalieetkksvirdvlerqlpeaeerleelekevekleesakriekelaelkkeieearielre 120
                  ++L +   e +kk+ ++ a   ++ +  +r  +e+++ ++ +rl+ le+ ++kle+++ ++e+++++++ +++  r++l++
   CDO68661.1 133 NTLSENFDEHVKKSERSFANLGSMMIN-LRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNT 212
                  556666666666666662222222222.566689999**********************************9999999986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.1
  DLP_helical  87 ekevekleesak 98 
                  e++ e++e++++
   CDO68661.1 302 EEQQEQQEQQQQ 313
                  111111111111 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3     0.044        14     118     157 ..     108     147 ..      94     155 .. 0.72
   2 ?    6.5   1.0     0.023       7.1     118     159 ..     165     206 ..     155     213 .. 0.57
   3 ?    4.0   1.1      0.13        42     126     167 ..     276     317 ..     264     325 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.044
  Ax_dynein_light 118 eqgkselekkikeLeeekeelekqvaelkaklealekrek 157
                      e +++ ++kk+ eL  ++++l  +v++l ++ ++  k+++
       CDO68661.1 108 EATTQATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSE 147
                      4556677777777777777777777777777776666555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.023
  Ax_dynein_light 118 eqgkselekkikeLeeekeelekqvaelkaklealekreker 159
                      e++++ ++ +++ Le++  +le ++++l+++++++  + k  
       CDO68661.1 165 ENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAI 206
                      344455555555566666666666666666655555544444 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.13
  Ax_dynein_light 126 kkikeLeeekeelekqvaelkaklealekrekerrqeeekkh 167
                      + +++Le+++e+     a + ++ +++e++e++++q+++ ++
       CDO68661.1 276 QGVHRLEHDVEDVAGGGAVTHEEQQDEEQQEQQEQQQQQPQQ 317
                      445555555555555544444444444444444444444333 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.2     0.042        13     361     417 ..     111     169 ..     101     204 .. 0.61
   2 ?    2.2   0.4      0.15        47     389     422 ..     173     206 ..     166     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.042
                    EEEEXHHHHHHH..HHHHHHHHHHHHHHTTTEEEBXSSXXTTTTHHHHHHHHHHHHHHH CS
  Hemagglutinin 361 avaadkkstqea..inkitkkvnsliekenkqleavgkelnelekrieeldkkvddgfl 417
                    + a+dkk    a  ++ ++ kvn+l+e    ++++  + + +l   + +l   +++ + 
     CDO68661.1 111 TQATDKKVDELAvkVDTLSVKVNTLSENFDEHVKKSERSFANLGSMMINLRGDMENRMT 169
                    44556665555522355666777777777777777777777777777777666665433 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
                    TEEEBXSSXXTTTTHHHHHHHHHHHHHHHHHHHH CS
  Hemagglutinin 389 kqleavgkelnelekrieeldkkvddgfldvity 422
                    ++l+++   + +le r+ +l+ ++ +   d+ + 
     CDO68661.1 173 TRLNTLETRMTKLETRMTKLETQMSNMSDDLKAI 206
                    5677888888888888888888888777666554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.049        15      83     122 ..      98     137 ..      85     139 .. 0.72
   2 ?   11.8   1.9   0.00059      0.18      47     112 ..     147     212 ..     137     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.049
     DUF1664  83 keikeevtevredlseigedvesvkeavegleskleriee 122
                 + i++ v++++  +++++++v+++   v +l  k+++++e
  CDO68661.1  98 EGITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSE 137
                 5667777777777777777777777777777777777765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00059
     DUF1664  47 skqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                  ++  ++ + + + + ++++r+  vd++l+  +   ++++  +t+++ ++s++++d+++++++ ++
  CDO68661.1 147 ERSFANLGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLNT 212
                 556666777777888888999999999999999999999999999999999999999999887665 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.0     0.021       6.5     107     129 ..     298     321 ..     278     338 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.021
       Spt20 107 qkqsq.qnqqqqqqqqqqqqqqqq 129
                 ++q++ q++qq qqqqq+qq+qq 
  CDO68661.1 298 EQQDEeQQEQQEQQQQQPQQEQQP 321
                 222222333333333333333322 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2    0.0011      0.35      33     107 ..     113     199 ..     102     200 .. 0.89
   2 ?    5.1   0.5     0.082        26      86     107 ..     178     199 ..     135     219 .. 0.63
   3 ?   -1.5   0.6       9.3   2.9e+03      38      50 ..     300     312 ..     276     320 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0011
                   HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT............S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS--- CS
  Seryl_tRNA_N  33 eldekrrelqveleelqaerNelskeIgkakkkk............edaeeliaevkelkeelkaleaelkeleaeleklllaiPNi 107
                   + d+k  el v+++ l  + N+ls+++ +  kk             + + ++ +++  + ++l++le+++++le++++kl +++ N+
    CDO68661.1 113 ATDKKVDELAVKVDTLSVKVNTLSENFDEHVKKSersfanlgsmmiNLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNM 199
                   679999*********************999988889999999998888899999999999999999999999999999999999987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.082
                   HHHHHHHHHHHHHHHHCTS--- CS
  Seryl_tRNA_N  86 leaelkeleaeleklllaiPNi 107
                   le+++++le++++kl +++ N+
    CDO68661.1 178 LETRMTKLETRMTKLETQMSNM 199
                   4444444444444444443333 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 9.3
                   HHHHHHHHHHHHH CS
  Seryl_tRNA_N  38 rrelqveleelqa 50 
                   + e q+e +e q+
    CDO68661.1 300 QDEEQQEQQEQQQ 312
                   2222222222222 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       1.2   3.7e+02       4      24 ..     102     122 ..      99     150 .. 0.73
   2 ?    8.1   0.1    0.0088       2.8       3      27 ..     172     196 ..     170     213 .. 0.83
   3 ?   -0.2   6.7       3.5   1.1e+03      10      30 ..     298     318 ..     290     324 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1.2
     DUF2802   4 qrlaelekrlkqleerleele 24 
                  r+a+le + + ++++++el+
  CDO68661.1 102 ARVASLEATTQATDKKVDELA 122
                 578888888888888888874 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0088
     DUF2802   3 gqrlaelekrlkqleerleeleqqd 27 
                 + rl++le+r+ +le+r+++le+q 
  CDO68661.1 172 DTRLNTLETRMTKLETRMTKLETQM 196
                 7899999999999999999987765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 3.5
     DUF2802  10 ekrlkqleerleeleqqdpqs 30 
                 e++ ++++e++e+ +qq +q+
  CDO68661.1 298 EQQDEEQQEQQEQQQQQPQQE 318
                 444445555555555554444 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2       0.2        64       6      53 ..     100     140 ..      89     161 .. 0.60
   2 ?    7.3   1.1     0.023       7.3       5      32 ..     184     211 ..     161     227 .. 0.58
   3 ?    1.9   0.3       1.1   3.6e+02      45      60 ..     298     313 ..     263     330 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHX CS
        YabA   6 lfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerle 53 
                 +++++++le +++++ ++++el  ++ +l  + ++L+        +++
  CDO68661.1 100 ITARVASLEATTQATDKKVDELAVKVDTLSVKVNTLSE-------NFD 140
                 45566666666666666666666666665555555543.......332 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleeleelkeela 32 
                 +l +++++le+q+++++++l++++++l+
  CDO68661.1 184 KLETRMTKLETQMSNMSDDLKAIRQTLN 211
                 2334445555555555555555555444 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 1.1
                 HHHHHHHHXXXXXXXX CS
        YabA  45 neklrerleeeekkek 60 
                  ++  e++e++e++++
  CDO68661.1 298 EQQDEEQQEQQEQQQQ 313
                 2222222211111111 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.4   0.00074      0.23     616     702 ..     124     211 ..      96     221 .. 0.65
   2 ?   -2.3   0.3       2.5   7.7e+02      14      49 ..     301     336 ..     292     342 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00074
    Prominin 616 qlckkltkvnletlaekleelanelsngk...knlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaave 702
                 ++++   +v ++tl+e+ +e+ ++ +++     ++  +l+ ++++  +i +++  +le+ + kl+ +++kl+++ s++++ +k + ++++
  CDO68661.1 124 KVDTL--SVKVNTLSENFDEHVKKSERSFanlGSMMINLRGDMENRMTIVDTRLNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLN 211
                 33333..33444455555555555544434446677777777777778888888888888888888888888888888887777776654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
    Prominin  14 vlytelkakenetkdlsskagaldplynlvhsfldv 49 
                 +++++ +++++++++++ ++ a +p +++v++++  
  CDO68661.1 301 DEEQQEQQEQQQQQPQQEQQPAAGPATTTVQTMIGQ 336
                 333444444455555566666777777777777765 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.2    0.0026      0.83       7      89 ..     128     210 ..     102     220 .. 0.59
   2 ?   -1.1   0.2       2.8   8.8e+02      68      80 ..     300     312 ..     261     336 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
       TMPIT   7 lekefkeleetakeykqkleels.klqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesll 89 
                 l+ ++++l+e+++e  +k+e+ + +l s + +     ++r++ ++++l++l++++ ++ e+++++l++++++++  lk + ++l
  CDO68661.1 128 LSVKVNTLSENFDEHVKKSERSFaNLGSMMINLRGDMENRMTIVDTRLNTLETRM-TKLETRMTKLETQMSNMSDDLKAIRQTL 210
                 5555555555555444444443303334444444555555666666666665554.3555555555555555555555555544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.8
       TMPIT  68 veelkeelkerkk 80 
                  +e ++e +e+++
  CDO68661.1 300 QDEEQQEQQEQQQ 312
                 1111111111111 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1       0.2        64      20      41 ..     117     138 ..     100     153 .. 0.61
   2 ?   11.3   0.2    0.0011      0.35      14      50 ..     175     211 ..     171     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.2
   DASH_Dad2  20 lsdslakqleeLeeklstladg 41 
                   d+la ++++L+ k++tl+++
  CDO68661.1 117 KVDELAVKVDTLSVKVNTLSEN 138
                 2345666666666666666655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0011
   DASH_Dad2  14 LkqlrdlsdslakqleeLeeklstladgteavasVla 50 
                 L+ l++   +l++++++Le+++s ++d  +a+ + l+
  CDO68661.1 175 LNTLETRMTKLETRMTKLETQMSNMSDDLKAIRQTLN 211
                 7778888899*********************998765 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.2      0.19        60      41     121 ..     111     185 ..      83     196 .. 0.64
   2 ?    7.1   1.2     0.017       5.5      45      71 ..     295     321 ..     269     346 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.19
   CPSF100_C  41 ekeeeeeeeeeeeeeeeaskkqkl..aeksekeaseeeseekkeslptldvlpankasvrsaaqplfvGdlrLadLkkallss 121
                 +++++++ +e + + ++      l  + ++ +e+ +e+ +++++s   l  +  n+     +++ + + d rL++L  ++++ 
  CDO68661.1 111 TQATDKKVDELAVKVDT------LsvKVNTLSENFDEHVKKSERSFANLGSMMINLRG--DMENRMTIVDTRLNTLETRMTKL 185
                 22222222222222222......23444556666666666666666666666666666..6999************9999876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.017
   CPSF100_C  45 eeeeeeeeeeeeeaskkqklaekseke 71 
                 ++ee+++ee++e+++++q++ ++++++
  CDO68661.1 295 THEEQQDEEQQEQQEQQQQQPQQEQQP 321
                 222222222222222222221111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2322  (0.129511); expected 358.6 (0.02)
Passed bias filter:                      914  (0.0509789); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.52
# Mc/sec: 2013.29
//
Query:       CDO68662.1  [L=316]
Description: hypothetical protein BN946_scf184790.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-72  244.5   0.5    1.7e-60  205.0   0.3    2.0  2  DUF4419   Domain of unknown function (DUF4419)


Domain annotation for each model (and alignments):
>> DUF4419  Domain of unknown function (DUF4419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.3   9.6e-65   1.7e-60       1     141 [.      59     201 ..      59     207 .. 0.98
   2 !   38.0   0.0   6.8e-14   1.2e-09     229     302 .]     221     299 ..     205     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 9.6e-65
     DUF4419   1 ngfveavleAyaehlhLvlrPDdvWlaIltqlsfyvnanaeelrslfvahegkkelevkaeekle..dweelakelteeiqknvkdpslrdwilpdFsT 97 
                 ngfv++vl+Ay eh+hL+lrPDdvW+aIltql fy+na+ eelr++fvah+gkkel v++ ++++  d++ la+ +te i++nv d++l +wilpdFsT
  CDO68662.1  59 NGFVWTVLKAYGEHHHLTLRPDDVWIAILTQLCFYINAHVEELRRYFVAHDGKKELIVQTGGDRYsvDFGYLARVMTERIHENVLDSTLVEWILPDFST 157
                 8*********************************************************99999999********************************* PP

     DUF4419  98 ttetdkvvaavllmatlkkyfeykvsllCGiPsvtLlGekeDWe 141
                 tt +d++v++v++m+tlk+yf+y+++l+CGiPsvtLlG+++DW 
  CDO68662.1 158 TTMKDTTVCSVIMMSTLKAYFAYTMELICGIPSVTLLGTQDDWX 201
                 *******************************************7 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 6.8e-14
     DUF4419 229 eeeeseeee........alvldgveypeidtddipsglasvpvkldedngkeyelelvaGsvGvkvsseee....dtlqpvsgWal 302
                 +e      +        + +ldgv+y  ++  +ip+g+++v+v+++ dng + ++ ++aG+v+ k+s++++    dtl p+++W++
  CDO68662.1 221 DE------ReswrrgsaSYTLDGVQYCTVSDARIPAGYSEVDVTVS-DNGIRRDCSMIAGHVASKASRSNPngvqDTLTPSAQWFI 299
                 22......122344466889*************************9.899******************99999*9*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2203.57
//
Query:       CDO68663.1  [L=371]
Description: hypothetical protein BN946_scf184790.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-99  333.5   0.0      2e-99  332.8   0.0    1.3  1  DUF4419   Domain of unknown function (DUF4419)


Domain annotation for each model (and alignments):
>> DUF4419  Domain of unknown function (DUF4419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.8   0.0  1.1e-103     2e-99       1     302 []      61     367 ..      61     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 332.8 bits;  conditional E-value: 1.1e-103
     DUF4419   1 ngfveavleAyaehlhLvlrPDdvWlaIltqlsfyvnanaeelrslfvahegkkelevkaeekledweelakelteeiqknvkdpslrdwilpdFsTtt 99 
                 ngfv++vl+Aya h+hL+lrPDdvW+aIltql fyvna+aeelr +fvah+gkkel                 +t++i++nv+d++l +wilpdFsTtt
  CDO68663.1  61 NGFVRTVLDAYAMHHHLILRPDDVWIAILTQLCFYVNAHAEELRGHFVAHDGKKELIL---------------MTRKIHENVVDSTLVEWILPDFSTTT 144
                 8********************************************************9...............9************************* PP

     DUF4419 100 etdkvvaavllmatlkkyfeykvsllCGiPsvtLlGekeDWekllerlekLkefgeelkewaklLrpildrfvesfdepdseenkeFWnkivkeeseeg 198
                 ++d++v+a+++m+tlk+yfey+++++CGiP+vtLlG+k+DW+ ll+rl++L ++g e+++wa +Lrpil+rf++ fd+p+++ + +FW+++v +++e  
  CDO68663.1 145 TKDRTVSAIVMMSTLKEYFEYEMQITCGIPTVTLLGTKDDWQALLRRLDRLPTLGAEPAAWALMLRPILRRFLAVFDNPEQP-DLDFWRSVVYQHDE-D 241
                 ********************************************************************************99.9********76665.8 PP

     DUF4419 199 sgeselsGWitaFcvydkdgkvleeekkeeeeeeseeee...................alvldgveypeidtddipsglasvpvkldedngkeyelelv 278
                 +ge+ +sGW+taFcv+d++g +++ +  + +e ++ +++                   + vldgv y  i++++ip+g+++v+v++d dng + ++ ++
  CDO68663.1 242 CGEDNISGWLTAFCVWDNEGVWKAGKLPDRPEMHDGDSAagnresslgtiemqirdtgKYVLDGVPYFTISVEKIPAGYCEVDVTVD-DNGIRLKCNMT 339
                 **********************9988877777666655579999**************999*************************9.999******** PP

     DUF4419 279 aGsvGvkvsseee....dtlqpvsgWal 302
                 aG+v+ kv s ++    +t+ p+++W++
  CDO68663.1 340 AGHVASKVLSCDPdgekNTVMPSAQWFI 367
                 ********987768888*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2631.28
//
Query:       CDO68664.1  [L=249]
Description: hypothetical protein BN946_scf184790.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-05   24.1   1.3    6.2e-05   23.4   1.3    1.3  1  DUF16           Protein of unknown function DUF16
    0.00021   20.7   3.6    0.00032   20.2   3.6    1.2  1  Tropomyosin     Tropomyosin
    0.00038   19.8   1.0    0.00059   19.2   1.0    1.2  1  DUF4763         Domain of unknown function (DUF4763)
    0.00043   19.9   2.1    0.00056   19.6   1.5    1.4  1  PspA_IM30       PspA/IM30 family
    0.00051   20.6   0.3     0.0015   19.0   0.5    1.5  1  Fez1            Fez1
     0.0006   19.9   5.6     0.0016   18.5   5.6    1.7  1  DUF2730         Protein of unknown function (DUF2730)
     0.0009   19.5   3.7     0.0013   19.0   3.7    1.2  1  ATG16           Autophagy protein 16 (ATG16)
    0.00098   19.7   1.0    0.00098   19.7   1.0    2.2  2  SlyX            SlyX
     0.0015   18.7   4.3     0.0037   17.4   4.3    1.6  1  Tropomyosin_1   Tropomyosin like
     0.0021   18.4   6.8       0.15   12.4   1.4    2.4  2  CLZ             C-terminal leucine zipper domain of cyclic nu
     0.0026   17.4   1.9     0.0037   16.9   1.9    1.2  1  PEARLI-4        Arabidopsis phospholipase-like protein (PEARL
     0.0036   16.6   0.3     0.0089   15.3   0.6    1.5  1  DUF2046         Uncharacterized conserved protein H4 (DUF2046
     0.0079   16.5   4.2      0.021   15.1   4.2    1.7  1  BLOC1_2         Biogenesis of lysosome-related organelles com
  ------ inclusion threshold ------
      0.014   15.4   3.5      0.024   14.6   3.5    1.3  1  Laminin_II      Laminin Domain II
      0.017   15.6   6.6       0.18   12.3   6.6    2.2  1  NPV_P10         Nucleopolyhedrovirus P10 protein
      0.018   15.0   5.1      0.073   13.1   0.6    2.2  2  DUF1664         Protein of unknown function (DUF1664)
      0.022   14.8   2.5       0.12   12.5   1.4    2.0  2  ADIP            Afadin- and alpha -actinin-Binding
      0.031   13.6   1.6      0.042   13.2   1.6    1.2  1  DUF3450         Protein of unknown function (DUF3450)
      0.032   14.5   3.4       0.13   12.5   3.4    1.9  1  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
      0.033   14.2   2.5      0.072   13.1   1.9    1.6  1  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
      0.035   14.1   0.1      0.076   13.0   0.1    1.5  1  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
      0.035   14.3   7.0        7.4    6.9   1.1    2.4  1  XhlA            Haemolysin XhlA
      0.039   13.1   4.5      0.054   12.6   4.5    1.1  1  DUF4686         Domain of unknown function (DUF4686)
       0.05   14.0   1.5       0.05   14.0   1.5    1.6  1  HrpB7           Bacterial type III secretion protein (HrpB7)
      0.052   13.9   3.9      0.052   13.9   3.9    2.3  2  FlaC_arch       Flagella accessory protein C (FlaC)
      0.066   13.6   2.3        1.6    9.2   0.6    2.9  4  LPP             Lipoprotein leucine-zipper
      0.068   12.3   0.7        0.1   11.7   0.6    1.3  1  FH2             Formin Homology 2 Domain
      0.082   11.8   2.3       0.12   11.3   2.3    1.2  1  Spc7            Spc7 kinetochore protein
      0.095   12.9   0.5       0.16   12.2   0.5    1.4  1  Fib_alpha       Fibrinogen alpha/beta chain family
       0.11   12.6   6.2       0.36   11.0   1.1    2.8  3  bZIP_2          Basic region leucine zipper
       0.11   12.0   3.9        1.9    7.9   0.3    2.3  2  BRI3BP          Negative regulator of p53/TP53
       0.12   12.5   0.6       0.31   11.2   0.2    1.9  1  MbeD_MobD       MbeD/MobD like
       0.13   12.4   2.4       0.43   10.7   1.0    2.1  2  bZIP_1          bZIP transcription factor
       0.13   12.2   6.0       0.24   11.4   6.0    1.4  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.14   10.8   0.4       0.18   10.4   0.4    1.1  1  AAA_13          AAA domain
       0.17   11.7   1.3       0.27   11.1   1.3    1.2  1  DUF724          Protein of unknown function (DUF724)
       0.23   12.1   1.9       0.37   11.4   1.9    1.3  1  BST2            Bone marrow stromal antigen 2
       0.36   11.2   4.0       0.47   10.8   1.1    2.2  2  TSC22           TSC-22/dip/bun family
       0.39    9.8   2.0       0.89    8.6   2.0    1.5  1  Rota_NSP3       Rotavirus non-structural protein NSP3
        0.4   11.0   2.4        3.7    7.8   2.0    2.1  2  DUF5082         Domain of unknown function (DUF5082)
       0.41   10.2   3.9       0.89    9.1   3.8    1.5  1  DUF4795         Domain of unknown function (DUF4795)
       0.46   11.0   5.2          1    9.9   4.8    1.7  2  ZapB            Cell division protein ZapB
       0.46   10.3   3.6        1.7    8.4   1.6    2.2  2  DivIC           Septum formation initiator
       0.59   10.5   4.9          2    8.8   3.2    2.6  2  CCDC53          Subunit CCDC53 of WASH complex
       0.62   11.0   4.0        8.1    7.4   4.0    2.3  1  Fes1            Nucleotide exchange factor Fes1
       0.73   10.1   5.1        1.2    9.4   5.1    1.3  1  KLRAQ           Predicted coiled-coil domain-containing prote
       0.82    9.3   3.0        7.8    6.1   0.3    2.1  2  DUF4988         Domain of unknown function
       0.89    9.9   4.8         16    5.9   0.6    3.1  2  CCDC-167        Coiled-coil domain-containing protein 167
          1    8.8   7.3       0.31   10.4   4.7    1.5  1  DUF3552         Domain of unknown function (DUF3552)
        1.6    9.0   4.2         57    4.0   4.2    2.3  1  Lge1            Transcriptional regulatory protein LGE1
        5.7    7.1   8.1         14    5.9   4.1    2.5  1  Uds1            Up-regulated During Septation


Domain annotation for each model (and alignments):
>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   1.3   1.8e-07   6.2e-05      31      92 ..     104     168 ..      88     174 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.8e-07
                 ....BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHH CS
       DUF16  31 s...nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletL 92 
                 +    k ++ ++e ++++l+ ++++le kv++++ k+++l+ ++++ + +++ +d+ l+ +l+ L
  CDO68664.1 104 DvreLKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQML 168
                 44444566666677777777777777777777777777777777777777777777777666666 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   3.6     9e-07   0.00032     173     234 ..     107     168 ..      92     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 9e-07
  Tropomyosin 173 eyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqtlaeL 234
                  e + ++ +Le++L + e++ +  E +v +Le +vdrle ++++   + + i+++Ldq l+ L
   CDO68664.1 107 ELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQML 168
                  45678889*************************************************99865 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.0   1.7e-06   0.00059      55     156 ..      49     152 ..      30     161 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.7e-06
     DUF4763  55 ydelekiKqrvlelrskLalnvpecPei..decvdedlelelltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrlrklqkrl 151
                  d+l ++  r    r  L+ + p++ ++   ++ +++l   ++ ++q+++  ++++   L+ ++ +l+++l+a ++++ +l+ ++ q+   +++l+ + 
  CDO68664.1  49 SDKLFRMADRSFSTRATLGAPNPDQSSAssGSSRERALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKV 147
                 599***********************9987788888888899999****************************************************** PP

     DUF4763 152 nelds 156
                 ++l+ 
  CDO68664.1 148 DQLET 152
                 *9986 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.5   1.6e-06   0.00056      87     138 ..     106     157 ..     100     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.6e-06
   PspA_IM30  87 realaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkell 138
                 re+  ++++le+ ++alet++++++  v+ql+ ++++le k+++l++ +el+
  CDO68664.1 106 RELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELI 157
                 5666799***************************************998865 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.5   4.3e-06    0.0015      25     101 ..      90     166 ..      87     174 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.3e-06
        Fez1  25 evtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelre 101
                 e +q   +++a+k ++rel+ k+ + e++++ le++++  + +++++e +++r + +++ l+ +ve ++++l ++ +
  CDO68664.1  90 EFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQ 166
                 77888899******************************************************999999998887655 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   5.6   4.7e-06    0.0016      30      97 ..     100     165 ..      84     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.7e-06
     DUF2730  30 akredleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqvdLLL 97 
                 a ++d+ +l+ k+ + ++rlt+letkv+ L  +  +++L++++  l+ ++++le +v+ +++++d  L
  CDO68664.1 100 AVKQDVRELKPKMVNLESRLTALETKVDRLEIK--VDQLEIKVDRLEIKVDQLETHVELIDRKLDQVL 165
                 568899999999999999999999999998554..557888888888888888888888888877655 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   3.7   3.7e-06    0.0013      65     150 ..      74     158 ..      35     166 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.7e-06
       ATG16  65 asqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelreke 150
                 +s  +s +s + + l  + aq++ ++ ++ +   el+ + ++l++ l +le+k  + e ++++le ++ +le k++++e +++  +
  CDO68664.1  74 SS-ASSGSSRERALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELID 158
                 11.12233444445556666666666666666666666666666666666666666666666666666666666666666655444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       7.2   2.5e+03      34      53 ..      92     111 ..      87     114 .. 0.61
   2 !   19.7   1.0   2.8e-06   0.00098       1      53 [.     115     167 ..     115     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 7.2
                 HHHHHHHHHHHHT-XXXXXX CS
        SlyX  34 drlqrqlrllaerlkelees 53 
                 ++ q  + ++++ ++el+++
  CDO68664.1  92 AQTQLDVMAVKQDVRELKPK 111
                 55566666666666666655 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX   1 leerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                 le+rl++LE+k+  +e  +++L   v + + ++d+l+++++l+ ++l ++ + 
  CDO68664.1 115 LESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQM 167
                 699*******************************************9776655 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   4.3   1.1e-05    0.0037      15      83 ..      97     162 ..      85     168 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-05
  Tropomyosin_1  15 kaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiq 83 
                     + +++++v+el  + ++ e+ ++ L++k++ le +v++le k+   + k+++   ++t+ e + rk++
     CDO68664.1  97 DVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQ---LETHVELIDRKLD 162
                    45567777888888888888888888888888888888888777776666654...4444555555544 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.6    0.0019      0.66      16      51 ..      97     130 ..      82     134 .. 0.80
   2 !   12.4   1.4   0.00043      0.15      29      66 ..     129     166 ..     127     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0019
         CLZ  16 DeeaakagaeqkeleekverLessLeaLqtrlarLl 51 
                 D    + +++ +el+ k+ +Les+L aL+t++ rL 
  CDO68664.1  97 DVM--AVKQDVRELKPKMVNLESRLTALETKVDRLE 130
                 444..44578899999****************9995 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00043
         CLZ  29 leekverLessLeaLqtrlarLlaeyessqrkLkqRit 66 
                 le kv++Le +++ L+ ++ +L + +e  +rkL q ++
  CDO68664.1 129 LEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQ 166
                 78899999999999999999999999999999988665 PP

>> PEARLI-4  Arabidopsis phospholipase-like protein (PEARLI 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.9   1.1e-05    0.0037     206     262 ..      88     144 ..      72     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-05
    PEARLI-4 206 kqEmekqekelaekEKeikevrekvtemaaklgelemkrarlekrlaflssKvekfk 262
                  +E  +++ +++   ++++e++ k+ +++++l+ le+k  rle +++ l+ Kv++++
  CDO68664.1  88 MHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLE 144
                 468888999999999**************************************9975 PP

>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   2.5e-05    0.0089     141     206 ..      87     151 ..      72     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.5e-05
     DUF2046 141 lmrkiekleaevlakqtkleqlrrekvelentleqeqealvnrlWkrldkleaekrllqekldqpv 206
                 lm+   + + +v+a ++++ +l+ ++v+le+ l    e+ v+rl  ++d+le     l  k+dq  
  CDO68664.1  87 LMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTA-LETKVDRLEIKVDQLEIKVDRLEIKVDQLE 151
                 8999999999**********************975.7999*************9999999999965 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   4.2     6e-05     0.021      31      95 ..      93     154 ..      75     163 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6e-05
     BLOC1_2  31 aasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEakf 95 
                 +++  ++++k+ + +l+ k+ +l++    l  + +++d++e +v++Le  v++L+  + +LE ++
  CDO68664.1  93 QTQLDVMAVKQDVRELKPKMVNLES---RLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHV 154
                 5666677777777777777777777...5566666666666666666666666666666666554 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   3.5   6.9e-05     0.024      25      95 ..      97     164 ..      86     169 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHH CS
  Laminin_II  25 nlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95 
                 ++  +k+++ e++ ++ + +  + ++ + ++  + +v +Le ++++L+ k+ +l+++ e    + ++++++
  CDO68664.1  97 DVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVEL---IDRKLDQV 164
                 344444444444444444444455555555555555555555555555554444444444...55555555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.6   0.00051      0.18      13      65 ..     119     161 ..      91     172 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00051
     NPV_P10  13 ikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiL 65 
                  +a+++kVd l+ +vd+          l+ k+d++  ++++let+ve I+  L
  CDO68664.1 119 LTALETKVDRLEIKVDQ----------LEIKVDRLEIKVDQLETHVELIDRKL 161
                 23444444444444444..........55555555555555555555554433 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   0.00021     0.073      83     123 ..      92     132 ..      86     137 .. 0.86
   2 ?    3.9   1.0      0.15        53      89     120 ..     133     164 ..     130     167 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00021
     DUF1664  83 keikeevtevredlseigedvesvkeaveglesklerieek 123
                 ++++ +v++v++d++e++ ++ ++++  + le+k++r+e k
  CDO68664.1  92 AQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIK 132
                 68889999999999999999999999999999999999865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.15
     DUF1664  89 vtevredlseigedvesvkeavegleskleri 120
                 v++++ ++++++ +v+++++ ve ++ kl+++
  CDO68664.1 133 VDQLEIKVDRLEIKVDQLETHVELIDRKLDQV 164
                 66666666666667777777777777666654 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4    0.0011      0.39      73     129 ..      81     137 ..      50     140 .. 0.79
   2 ?   12.5   1.4   0.00034      0.12      56      94 ..     120     158 ..     100     168 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0011
        ADIP  73 qskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqik 129
                 + +   l  + +q++  + +v+++ r+l+ k+ +le+ l  +  ++ rl+ +++q++
  CDO68664.1  81 SRERALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLE 137
                 4555667788899999999********************************999976 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00034
        ADIP  56 eslnetirkleaeierlqskierlktqleqlerelalvq 94 
                 ++l++++ +le   ++l+ k++rl+ ++ qle+ ++l  
  CDO68664.1 120 TALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELID 158
                 333444444444444444444444444444444444433 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.6   0.00012     0.042      33     102 ..      99     168 ..      75     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
     DUF3450  33 aqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpll 102
                  ++ + + +l+ +  +l+++++al++++++le++ +qle  v+ +e ++++le+  e i++  +++ ++l
  CDO68664.1  99 MAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQML 168
                 5667788888888889999999999999999999999999999999999999999999988877777766 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.4   0.00037      0.13      17      88 ..     101     169 ..      86     171 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00037
  TMF_TATA_bd  17 lsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellG 88 
                   ++ +r+l   + +l+++l+ le++ d+++  + +l  ++   ++l+ ++++le+++e ++++++++L++lG
   CDO68664.1 101 VKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKV---DRLEIKVDQLETHVELIDRKLDQVLQMLG 169
                  5677888888888888888888888888887777776555...55678999********************9 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.9    0.0002     0.072      16      74 .]      86     144 ..      85     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0002
  TMF_DNA_bd  16 qLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkeae 74 
                  Lm E  + +   ++ ++ + +L+ k+ +le+ ++ l+ k+++le ++++le + ++ e
  CDO68664.1  86 LLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLE 144
                 57777777778888888888888888888888888888888888888888888887765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00022     0.076      48     115 ..      99     168 ..      85     174 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00022
  Baculo_PEP_C  48 nalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqal 115
                    a+++d+++l +++  +l++ lt+L++++ +l+   d+l+ + + l+ ++ +L + v  i   L  +lq l
    CDO68664.1  99 MAVKQDVRELKPKM-VNLESRLTALETKVDRLEikvDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQML 168
                   34455555544433.24566666666666666666666666666666666666666666665555555554 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.1     0.021       7.4       5      32 ..     139     166 ..     135     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.021
        XhlA   5 rlerietkldnleervdkleekaaeaee 32 
                 ++ r+e k+d le+ v+ +++k + +++
  CDO68664.1 139 KVDRLEIKVDQLETHVELIDRKLDQVLQ 166
                 7889999999999999999999888776 PP

>> DUF4686  Domain of unknown function (DUF4686)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.5   0.00015     0.054     150     227 ..      81     158 ..      71     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
     DUF4686 150 ilekkqLeekikeaseneaklkqqlqeeqqkrklLdqnveeLqqqvrslrdkeaqlertnsqqqlriqqqeaqlkkle 227
                 + e++ L+++  + + +  ++kq + e + k   L+ +   L ++v  l+ k  qle+ + +++++++q e+ ++ ++
  CDO68664.1  81 SRERALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELID 158
                 568889999999999999999999999999999999999999999999999999999999999999999999887655 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.5   0.00014      0.05      81     138 ..     105     162 ..      80     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00014
       HrpB7  81 rdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraae 138
                 + +l+ ++  +e++l a++ ++d+ e +v + + k+ R++ ++d+ +  +e ++r+++
  CDO68664.1 105 VRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLD 162
                 4456666777888888888888888888888888888888888888888888888876 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.7     0.025       8.8       4      34 ..     107     137 ..     105     138 .. 0.71
   2 ?   13.9   3.9   0.00015     0.052       1      43 [.     125     167 ..     125     168 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.025
   FlaC_arch   4 elEnklsklsteletvkkeneelsksveelk 34 
                 el  k+ +l+++l+ ++++ + l+ +v++l+
  CDO68664.1 107 ELKPKMVNLESRLTALETKVDRLEIKVDQLE 137
                 6777777777777777777777777777765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00015
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVkdllsL 43 
                 ++d lE k+++l+++++ ++ + ++l++ ve ++++  ++l++
  CDO68664.1 125 KVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQM 167
                 89**********************************9999976 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       4.5   1.6e+03      21      36 ..      89     104 ..      83     107 .. 0.73
   2 ?    3.2   0.0      0.35   1.2e+02       7      30 ..     103     126 ..      97     130 .. 0.77
   3 ?    3.6   0.1      0.26        90       2      26 ..     112     136 ..     111     138 .. 0.62
   4 ?    9.2   0.6    0.0046       1.6       1      25 [.     132     156 ..     125     166 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 4.5
         LPP  21 sdvnsakaaaqaakeE 36 
                  + ++++ +++a+k++
  CDO68664.1  89 HEFAQTQLDVMAVKQD 104
                 5667778888888876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.35
         LPP   7 sqVsqLkskvdqlssdvnsakaaa 30 
                 ++V +Lk k+ +l+s ++++++ +
  CDO68664.1 103 QDVRELKPKMVNLESRLTALETKV 126
                 789999999999998888877766 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.26
         LPP   2 ldeLssqVsqLkskvdqlssdvnsa 26 
                 + +L s + +L++kvd l+ +v+++
  CDO68664.1 112 MVNLESRLTALETKVDRLEIKVDQL 136
                 5566666667777777776666554 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0046
         LPP   1 kldeLssqVsqLkskvdqlssdvns 25 
                 k+d+L   V +L+ kvdql+  v+ 
  CDO68664.1 132 KVDQLEIKVDRLEIKVDQLETHVEL 156
                 5677777777777777777666655 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   0.00029       0.1     274     349 ..      94     169 ..      87     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
                 CTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
         FH2 274 akvnleslekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfg 349
                 +++++ +++++v++l+ ++ +le  l++ e+k +  +  +++l+  +++ e k+++le++ + + ++++++++++g
  CDO68664.1  94 TQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQMLG 169
                 5789999************************9999999999******************************99986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.3   0.00033      0.12     197     257 ..      94     154 ..      75     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
        Spc7 197 dkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervl 257
                 ++ ++ +++++++elk ++ +++ +l+ l++++++le k+++l+ + ++le ++ + e  +
  CDO68664.1  94 TQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHV 154
                 3566677788888888888888888888888888888888888877777777777766554 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00044      0.16      76     129 ..      98     151 ..      63     161 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00044
                 HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  76 dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqke 129
                   ++k+  +el+ ++++l+ +++a e+++  L   ++++e k+ +Le ++dq+e
  CDO68664.1  98 VMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLE 151
                 445555566666666666666666666666666666666666666666666665 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4      0.94   3.3e+02      31      51 ..     102     122 ..      76     124 .. 0.55
   2 ?   11.0   1.1     0.001      0.36      25      52 ..     110     137 ..      99     139 .. 0.92
   3 ?    7.0   0.3     0.017       6.1      26      49 ..     132     155 ..     131     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.94
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  31 eervkeLeeeNaqLrqkveqL 51 
                 ++ v eL+ +   L+ ++ +L
  CDO68664.1 102 KQDVRELKPKMVNLESRLTAL 122
                 333444444444444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  25 akeeeleervkeLeeeNaqLrqkveqLe 52 
                  k+ +le+r+  Le++ ++L+ kv+qLe
  CDO68664.1 110 PKMVNLESRLTALETKVDRLEIKVDQLE 137
                 58889*********************98 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  26 keeeleervkeLeeeNaqLrqkve 49 
                 k  +le +v +Le + +qL+  ve
  CDO68664.1 132 KVDQLEIKVDRLEIKVDQLETHVE 155
                 456777777777777777777666 PP

>> BRI3BP  Negative regulator of p53/TP53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0055       1.9     156     178 ..     117     139 ..      96     141 .. 0.83
   2 ?    5.4   0.4     0.033        12     159     179 ..     141     161 ..     139     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0055
      BRI3BP 156 esgasleakvrsLerqvrelnkr 178
                 +  + le+kv+ Le +v +l+++
  CDO68664.1 117 SRLTALETKVDRLEIKVDQLEIK 139
                 45678999999999999999986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.033
      BRI3BP 159 asleakvrsLerqvrelnkrq 179
                  +le kv++Le+ v+++++++
  CDO68664.1 141 DRLEIKVDQLETHVELIDRKL 161
                 689**************9985 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00088      0.31      35      68 ..     111     143 ..     103     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00088
   MbeD_MobD  35 rmfeltqrenaaLseqvtgLsqQVesLseqvrRl 68 
                 +m++l++r   aL+ +v++L   V++L  +v+Rl
  CDO68664.1 111 KMVNLESRLT-ALETKVDRLEIKVDQLEIKVDRL 143
                 7999999977.9*********************9 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.067        24      33      60 ..     103     130 ..      97     133 .. 0.81
   2 ?   10.7   1.0    0.0012      0.43      30      63 ..     121     154 ..     116     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.067
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  33 rrvkaLekeNksLkseleelkkevekLk 60 
                 + v +L+ ++ +L s+l  l+ +v+ L+
  CDO68664.1 103 QDVRELKPKMVNLESRLTALETKVDRLE 130
                 6688999999999999999999988876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  30 eLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 +Le++v+ Le +  +L  ++++l+ +v++L++ v
  CDO68664.1 121 ALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHV 154
                 6677777777777777777777777776666544 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.0   0.00068      0.24      32     110 ..      83     161 ..      78     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00068
  CENP-F_leu_zip  32 elemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenll 110
                     e   + ++  ++ l++   k+ v +lk ++ +l+++l+ le++++ l    ++Le ++     +v++Le+  + + + l
      CDO68664.1  83 ERALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKL 161
                     4444444555677888889999999999999999999999999999999999999999999999999999877666555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00051      0.18     406     469 ..     100     163 ..      77     170 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00051
      AAA_13 406 eleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLka 469
                  +++++ e+k k+ +le  ++ le++++  e ++ +le ++  Le ++ + +  +e i ++L +
  CDO68664.1 100 AVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQ 163
                 3566777777777777777777777777777777777777777777777777777777777765 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   0.00076      0.27     111     182 ..      84     155 ..      75     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00076
      DUF724 111 rkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFe 182
                 r  l +++++ + +   ++++++el+ k+++le +l++l +k ++ + ++ +l+ ++++le ++++ e+++e
  CDO68664.1  84 RALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVE 155
                 555667788888899999999******************999999999999999999999999999998876 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.9    0.0011      0.37      20      90 ..      85     155 ..      75     156 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        BST2  20 rlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaeve 90 
                  lL ++ +q+q  +   ++++   +  +v+L++ L+  +++  + + kv +l+ ++ +L+ k+++ e++ve
  CDO68664.1  85 ALLMHEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVE 155
                 69999***********************************************************9999887 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1    0.0013      0.47      10      41 ..      99     130 ..      98     139 .. 0.83
   2 ?    1.1   0.6       1.4     5e+02      16      35 ..     133     152 ..     125     164 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0013
       TSC22  10 fAVrEeVevLkekIkeLeernseleeENslLk 41 
                 +AV+  V +Lk k ++Le+r ++le+    L 
  CDO68664.1  99 MAVKQDVRELKPKMVNLESRLTALETKVDRLE 130
                 79**********************98766554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.4
       TSC22  16 VevLkekIkeLeernselee 35 
                 V++L  k+  Le ++ +le+
  CDO68664.1 133 VDQLEIKVDRLEIKVDQLET 152
                 56666666666666666665 PP

>> Rota_NSP3  Rotavirus non-structural protein NSP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.0    0.0025      0.89     146     207 ..      92     154 ..      70     169 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0025
   Rota_NSP3 146 Gklkvdveknevdtedlkskieeleqiidale.kykdivldldkmneevkldqnsisynsaai 207
                  + ++dv     d  +lk k+ +le ++ ale k + + +++d+++ +v  ++  + + ++++
  CDO68664.1  92 AQTQLDVMAVKQDVRELKPKMVNLESRLTALEtKVDRLEIKVDQLEIKVDRLEIKVDQLETHV 154
                 555666666667777888888888888888853566677888888777777777777777776 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.87   3.1e+02       3      30 ..      82     109 ..      80     114 .. 0.87
   2 ?    7.8   2.0     0.011       3.7      90     122 ..     119     151 ..     100     164 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.87
     DUF5082   3 tkisklqaqiaelrseiaaleekIerLk 30 
                 ++++ l ++ a+++ ++ a+ +++++Lk
  CDO68664.1  82 RERALLMHEFAQTQLDVMAVKQDVRELK 109
                 57788899999*************9998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.011
     DUF5082  90 idaieeEIerLenqiseaqgvldtlqsqlnslk 122
                   a+e+++ rLe ++ ++++++d+l+ ++++l+
  CDO68664.1 119 LTALETKVDRLEIKVDQLEIKVDRLEIKVDQLE 151
                 345667777777777777777777776666664 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.8    0.0025      0.89      35     116 ..      89     166 ..      77     196 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0025
     DUF4795  35 krledkekklealkkqieelekvkadkeeveeelaekadkeaLatkvsrdqfDeakkeLekmleellekleeqeealkkald 116
                 ++ ++++ ++ a+k+ ++el+ +  + e   ++l+ k+d+  L++kv  dq++ ++++Le ++ +l  ++e  +++l+++l+
  CDO68664.1  89 HEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDR--LEIKV--DQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQ 166
                 4445555555555555555555555555555555555543..44444..344444444444444444444444444444443 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       4.5   1.6e+03      24      48 ..      88     112 ..      83     121 .. 0.53
   2 ?    9.9   4.8    0.0029         1      13      68 ..     112     167 ..     102     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 4.5
        ZapB  24 qmeieeLkeeneelkeenreleeen 48 
                   e ++ + ++ + k+  rel+ + 
  CDO68664.1  88 MHEFAQTQLDVMAVKQDVRELKPKM 112
                 4555555555555566666555333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0029
        ZapB  13 iqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkLLgk 68 
                   ++  ++t+L  ++++L+ ++ +l+ + ++le +++ql++  e + ++l+++L+ 
  CDO68664.1 112 MVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVLQM 167
                 55555678999999999999999999999999999999999999999999999975 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.6    0.0049       1.7      14      51 ..      93     130 ..      85     144 .. 0.83
   2 ?    6.4   1.5     0.022       7.6      18      57 ..     118     157 ..     113     162 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0049
                 XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  14 kgllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 +++l+++++kq++ +l+ ++++l  +  +Le +v++L+
  CDO68664.1  93 QTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLE 130
                 67788999999999999999999999999999999984 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyi 57 
                 ++ +l+ ++++l+ ++++l  + ++Le +v++L+   + i
  CDO68664.1 118 RLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELI 157
                 5566777777777778888888888887777776555555 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       6.1   2.2e+03      87     119 ..      69     104 ..      32     114 .. 0.55
   2 ?    8.8   3.2    0.0056         2      18      49 ..     114     146 ..     100     239 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 6.1
      CCDC53  87 qaeeasqaeesaeeeaeeqeesesk...nvltvkdD 119
                 +++ +s+a++ ++ e +  +++ ++   +v++vk+D
  CDO68664.1  69 PNPDQSSASSGSSRERALLMHEFAQtqlDVMAVKQD 104
                 333333333333333333333322245555666555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0056
      CCDC53  18 ecEekLvevekrlqrleitlalLEakLsSip.g 49 
                 + E++L+ +e++++rlei++  LE k +  + +
  CDO68664.1 114 NLESRLTALETKVDRLEIKVDQLEIKVDRLEiK 146
                 579999999999999999999999997743332 PP

>> Fes1  Nucleotide exchange factor Fes1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.0     0.023       8.1      38      88 ..      87     158 ..      50     160 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.023
        Fes1  38 ldpeildal...lggpsdaelmkeamevlede..................evtlenkliAldnleqlieslD 88 
                 l  e  ++    +  ++d+ ++k +m  le++                  e +++   i +d+le ++e +D
  CDO68664.1  87 LMHEFAQTQldvMAVKQDVRELKPKMVNLESRltaletkvdrleikvdqlEIKVDRLEIKVDQLETHVELID 158
                 233333333244556777788888887777555556333333433333446666666666666666666666 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.1    0.0034       1.2       7      76 ..      91     160 ..      86     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0034
       KLRAQ   7 YsKlraqakvLkkavleEqskeaslkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekk 76 
                 +++ +     +k+ v e + k  +l+  l   e+++ + e  vd L+ + ++Le +v++l  ++e   +k
  CDO68664.1  91 FAQTQLDVMAVKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRK 160
                 5555555555788888899999999999999999999999999999999999999999999998876655 PP

>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3     0.022       7.8       3      29 ..     110     136 ..     101     139 .. 0.77
   2 ?    5.2   0.8     0.042        15       4      31 ..     132     159 ..     129     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
     DUF4988   3 ddvndlkdrvaaleeqvkelndnieal 29 
                  ++ +l++r +ale++v+ l+ ++++l
  CDO68664.1 110 PKMVNLESRLTALETKVDRLEIKVDQL 136
                 456678889999999998888877776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.042
     DUF4988   4 dvndlkdrvaaleeqvkelndniealkk 31 
                 +v++l+ +v  le +v++l++++e + +
  CDO68664.1 132 KVDQLEIKVDRLEIKVDQLETHVELIDR 159
                 7788888888888888888887777654 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3       0.2        71      19      61 ..      34     122 ..      28     136 .. 0.52
   2 ?    5.9   0.6     0.046        16       5      29 ..     139     163 ..     135     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.2
    CCDC-167  19 rLeaverrlrkeelseee..............................................ResleeEeaslkeqleenekeLksL 61 
                  L++v+ +++ +++s+++                                                ++++  ++lk ++ + e++L+ L
  CDO68664.1  34 PLQSVNAQITLRTISSDKlfrmadrsfstratlgapnpdqssassgssrerallmhefaqtqldVMAVKQDVRELKPKMVNLESRLTAL 122
                 56677777777777777666666666666555555555555555555544444444444333332222244444444444444444444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.046
    CCDC-167   5 eIdkleeklascrerLeaverrlrk 29 
                 ++d+le k+ +++  +e ++r+l +
  CDO68664.1 139 KVDRLEIKVDQLETHVELIDRKLDQ 163
                 589*******************986 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.7   0.00087      0.31      69     133 ..     101     165 ..      81     169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00087
     DUF3552  69 lekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelv 133
                 + ++++e + ++ +le Rl   e+++dr e ++++ e ++ + e +++q e+++e  +++l++++
  CDO68664.1 101 VKQDVRELKPKMVNLESRLTALETKVDRLEIKVDQLEIKVDRLEIKVDQLETHVELIDRKLDQVL 165
                 56788889999999999998888888886666666666666666666666666655555555544 PP

>> Lge1  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.2      0.16        57      34      62 ..     107     135 ..      88     165 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.16
        Lge1  34 elklkvlkleleldlleeqierdaLrvqL 62 
                 elk k+++le  l  le++++r + +v +
  CDO68664.1 107 ELKPKMVNLESRLTALETKVDRLEIKVDQ 135
                 55555555555555555555554444433 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.1     0.039        14      82     118 ..      89     125 ..      35     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.039
        Uds1  82 eslakaeeelaeserkvdelaselekleeraaevrrr 118
                 ++ a+++ ++ + ++ v el+ ++ +le+r++ ++++
  CDO68664.1  89 HEFAQTQLDVMAVKQDVRELKPKMVNLESRLTALETK 125
                 3466666666677777777777777777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      782  (0.0436165); expected 358.6 (0.02)
Passed Vit filter:                       188  (0.0104858); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              51  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 1590.81
//
Query:       CDO68665.1  [L=267]
Description: hypothetical protein BN946_scf184790.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-05   22.3   0.0    7.7e-05   21.9   0.0    1.0  1  Clusterin        Clusterin
    0.00036   20.0   2.8    0.00069   19.1   2.8    1.4  1  Tropomyosin      Tropomyosin
    0.00088   18.9   0.1     0.0013   18.3   0.1    1.4  1  DUF4795          Domain of unknown function (DUF4795)
     0.0015   18.1   1.0     0.0027   17.2   1.0    1.4  1  DegS             Sensor protein DegS
     0.0019   18.4   1.5     0.0036   17.5   1.5    1.5  1  XhlA             Haemolysin XhlA
     0.0019   18.4   1.0     0.0036   17.5   1.0    1.3  1  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
     0.0019   17.8   0.9      0.003   17.2   0.9    1.2  1  Filament         Intermediate filament protein
     0.0021   18.3   1.3     0.0043   17.3   1.3    1.5  1  BLOC1_2          Biogenesis of lysosome-related organelles co
     0.0022   18.1   1.6     0.0045   17.0   1.6    1.5  1  DUF1664          Protein of unknown function (DUF1664)
     0.0024   17.9   1.5     0.0053   16.8   1.5    1.5  1  DUF2730          Protein of unknown function (DUF2730)
     0.0028   17.6   1.3     0.0052   16.7   1.3    1.5  1  Prefoldin_2      Prefoldin subunit
     0.0029   17.9   0.4     0.0051   17.1   0.4    1.4  1  ATG16            Autophagy protein 16 (ATG16)
     0.0033   17.5   1.3      0.006   16.6   1.3    1.3  1  Laminin_II       Laminin Domain II
     0.0039   17.7   0.4     0.0068   16.9   0.4    1.4  1  DUF16            Protein of unknown function DUF16
     0.0048   16.8   0.2     0.0066   16.3   0.2    1.3  1  Spc29            Spindle Pole Component 29
      0.005   17.2   2.9       0.29   11.5   0.4    2.5  2  FlaC_arch        Flagella accessory protein C (FlaC)
     0.0052   16.4   2.4      0.008   15.8   2.4    1.2  1  PEARLI-4         Arabidopsis phospholipase-like protein (PEAR
     0.0064   16.9   1.0      0.029   14.8   1.0    2.1  1  NPV_P10          Nucleopolyhedrovirus P10 protein
     0.0066   15.8   0.4     0.0089   15.4   0.4    1.2  1  DUF4407          Domain of unknown function (DUF4407)
     0.0097   16.0   1.1      0.017   15.2   1.1    1.3  1  ADIP             Afadin- and alpha -actinin-Binding
     0.0099   15.9   0.8      0.017   15.1   0.1    1.8  1  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
     0.0099   16.3   1.5      0.029   14.8   1.5    1.8  1  ZapB             Cell division protein ZapB
  ------ inclusion threshold ------
      0.011   15.8   1.7       0.02   15.0   1.4    1.7  1  bZIP_2           Basic region leucine zipper
      0.012   16.0   3.0       0.09   13.1   3.0    2.3  1  CLZ              C-terminal leucine zipper domain of cyclic n
      0.013   15.0   0.5      0.022   14.2   0.5    1.4  1  FliD_C           Flagellar hook-associated protein 2 C-termin
      0.016   15.6   0.0       0.51   10.8   0.0    2.2  2  HsbA             Hydrophobic surface binding protein A
      0.018   14.4   1.9      0.029   13.7   1.9    1.2  1  GAS              Growth-arrest specific micro-tubule binding
      0.019   13.9   1.0      0.019   13.9   1.0    1.6  2  Spc7             Spc7 kinetochore protein
       0.02   13.1   0.1      0.028   12.6   0.1    1.2  1  FPP              Filament-like plant protein, long coiled-coi
      0.021   15.1   1.1       0.14   12.4   1.2    2.2  1  ABC_tran_CTD     ABC transporter C-terminal domain
      0.023   13.8   0.3      0.035   13.2   0.3    1.2  1  RmuC             RmuC family
      0.024   14.3   1.0       0.04   13.6   1.0    1.3  1  Laminin_I        Laminin Domain I
      0.026   14.5   1.1      0.054   13.5   1.1    1.5  1  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
      0.026   14.1   0.4      0.048   13.2   0.4    1.4  1  PspA_IM30        PspA/IM30 family
      0.032   14.4   1.9      0.032   14.4   1.9    1.5  1  Tropomyosin_1    Tropomyosin like
      0.033   14.2   2.4      0.066   13.3   2.4    1.4  1  BRE1             BRE1 E3 ubiquitin ligase
      0.034   14.2   2.7      0.066   13.3   2.7    1.4  1  DUF1640          Protein of unknown function (DUF1640)
      0.038   13.4   1.3      0.061   12.7   1.3    1.2  1  Cluap1           Clusterin-associated protein-1
      0.039   14.4   2.1       0.22   12.0   2.1    2.2  1  GPS2_interact    G-protein pathway suppressor 2-interacting d
       0.05   14.0   1.9       0.13   12.7   1.9    1.7  1  Snapin_Pallidin  Snapin/Pallidin
      0.055   13.0   0.1      0.091   12.3   0.1    1.3  1  MscS_porin       Mechanosensitive ion channel porin domain
       0.06   13.3   0.6       0.06   13.3   0.6    1.6  1  Ax_dynein_light  Axonemal dynein light chain
      0.061   13.5   0.4       0.13   12.5   0.4    1.6  1  Fib_alpha        Fibrinogen alpha/beta chain family
      0.063   12.6   0.2        0.1   11.9   0.2    1.3  1  DUF3450          Protein of unknown function (DUF3450)
      0.067   13.3   1.9       0.14   12.3   1.8    1.6  1  bZIP_1           bZIP transcription factor
      0.068   11.7   0.3      0.082   11.5   0.3    1.1  1  Macoilin         Macoilin family
      0.077   11.6   0.1        0.1   11.2   0.1    1.1  1  AAA_13           AAA domain
      0.088   13.3   0.6       0.17   12.4   0.6    1.4  1  Spectrin         Spectrin repeat
      0.095   11.8   0.2       0.16   11.0   0.2    1.3  1  DUF3086          Protein of unknown function (DUF3086)
      0.096   12.6   0.5       0.15   12.0   0.5    1.5  1  STAT_alpha       STAT protein, all-alpha domain
       0.12   12.5   4.0        2.4    8.3   2.5    2.1  2  CEP209_CC5       Coiled-coil region of centrosome protein CE2
       0.13   11.8   0.5        0.2   11.2   0.5    1.3  1  BRI3BP           Negative regulator of p53/TP53
       0.14   12.0   2.7        1.3    8.9   2.7    2.2  1  TRAF_BIRC3_bd    TNF receptor-associated factor BIRC3 binding
       0.14   12.0   2.4       0.17   11.7   0.9    1.9  2  Nsp1_C           Nsp1-like C-terminal region
       0.14   12.1   1.2       0.25   11.2   1.2    1.5  1  EMP24_GP25L      emp24/gp25L/p24 family/GOLD
       0.15   11.9   0.3       0.26   11.1   0.3    1.3  1  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
       0.17   12.0   1.2       0.55   10.4   0.6    1.9  1  TolA_bind_tri    TolA binding protein trimerisation
       0.22   10.9   0.2       0.28   10.5   0.2    1.1  1  FAM76            FAM76 protein
       0.25    9.3   0.4       0.33    8.9   0.4    1.1  1  Prominin         Prominin
       0.27   11.1   3.2       0.86    9.5   3.0    2.0  1  HSBP1            Heat shock factor binding protein 1
       0.41   10.7   5.6       0.14   12.2   2.5    1.7  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        0.6   10.8   5.7       0.61   10.7   0.4    2.6  2  SlyX             SlyX
       0.61   10.5   2.3        5.4    7.5   0.4    2.5  2  LPP              Lipoprotein leucine-zipper
        1.4    9.2   3.7        1.6    9.0   0.9    2.2  2  DUF948           Bacterial protein of unknown function (DUF94
          4    7.9   8.3       0.45   10.9   1.7    2.5  2  Csm1_N           Csm1 N-terminal domain
        4.7    7.5   5.7        4.1    7.7   2.9    2.2  1  Spc24            Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> Clusterin  Clusterin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.8e-07   7.7e-05     104     255 ..      87     239 ..      80     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.8e-07
   Clusterin 104 sglvgrkleeflnkispfsfwlneeridsllvseedeeedaeleqledsfsqlssdvdslfnrslkvfkqmqqefdqafqsaflsdldlteee.flpal 201
                 s+  +r + ++ + ++++++ +   ++d  +++   e  ++++++le++  +l+++vd+l +r  + f+q+++++dq +++  +   +++++   lpa 
  CDO68665.1  87 STISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKLDQILHALGSGAGRASMSVpDLPAS 185
                 445568899*******************999999999999*************************************9988666655555333344544 PP

   Clusterin 202 skarksrllrslglenlfqpffdfsrsvfesvsevvtetleavedekkqkkeed 255
                 ++ r +r   + g   + q ++d +r+++++v +  t+ l++ ede  +++  +
  CDO68665.1 186 ATDRGARRRGTGGGGTFRQNILDRARNILHRVTNEATTGLRELEDEAIEEEGGH 239
                 4333333333347788999*************9999999866666655444443 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.8   2.5e-06   0.00069     173     234 ..     110     168 ..      91     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.5e-06
  Tropomyosin 173 eyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqtlaeL 234
                  ++++ + +L+ ++ + e+R  + E +v kLe++vd+le +++    k  +++++Ldq l+ L
   CDO68665.1 110 AVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMD---FKFSQVDRKLDQILHAL 168
                  56788999******************************9987...58999999999999877 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.9e-06    0.0013      28     104 ..      92     168 ..      84     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.9e-06
     DUF4795  28 ekvkelekrledkekklealkkqieelekvkadkeeveeelaekadkeaLatkvsrdq..fDeakkeLekmleellekl 104
                   v++l +++ +++ ++ a+k  + el+ + +d e+  ++l+ k+dk  L++kv++ +  +D+++++ +++l ++l+ l
  CDO68665.1  92 RDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDK--LENKVDKLEtrMDFKFSQVDRKLDQILHAL 168
                 56889999999999999999999999999999999999999999996..999999887889999999999999999876 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.0     1e-05    0.0027      75     137 ..      90     152 ..      84     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-05
        DegS  75 seeeikeaYeeakelqvelallrekEkqlrerRdelerrLkklketierAeklvsqvgvvlny 137
                 s  ++ +  +e ++lq+e+a +++  ++l+ r +++e r+++l++ +++ e+ v ++++ +++
  CDO68665.1  90 SSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDF 152
                 677888888999*************************************99999998888877 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.5   1.3e-05    0.0036       2      33 ..     118     149 ..     110     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-05
        XhlA   2 ikerlerietkldnleervdkleekaaeaeek 33 
                 +k r e iet+  nle++vdkle+k ++ e++
  CDO68665.1 118 LKPRMEDIETRMTNLENKVDKLENKVDKLETR 149
                 56677889999999999999999999998876 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.0   1.3e-05    0.0036      10      88 ..      90     169 ..      83     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-05
  TMF_TATA_bd  10 svqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelek.eleelqeryetlLellG 88 
                  s++ v++l +e  rl++E+a++k+++++l+   ++++  + +l +++++l+++ ++le+    ++++++++++++L  lG
   CDO68665.1  90 SSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDfKFSQVDRKLDQILHALG 169
                  55567777788889******************************99999999999888654459*************999 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.9   1.1e-05     0.003     198     266 ..      95     163 ..      86     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-05
                 XXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 198 eelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklse 266
                 ++l +++++ + ++ ++k++++el+ +++  e+ + +l+++ ++le+++  le r++ + +++ +kl++
  CDO68665.1  95 THLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKLDQ 163
                 445566666666666777777777777777777777777777777777777777777776666666665 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.3   1.6e-05    0.0043      39      95 ..      97     150 ..      86     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-05
     BLOC1_2  39 lkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEakf 95 
                 l ++   l+ ++ ++   +  +++++ ++++ie++ t Le+ v++L++ + +LE ++
  CDO68665.1  97 LVQESTRLQIEMAAV---KRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 444444444444444...4588888899999**********************9986 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.6   1.6e-05    0.0045      73     122 ..      99     148 ..      87     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-05
     DUF1664  73 kkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++    +   +++k++v+e++  +++i++ ++++++ v +le+k++++e+
  CDO68665.1  99 QESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLET 148
                 44444444457789999999999999999999999999999999999986 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.5     2e-05    0.0053      31      91 ..     111     166 ..      91     169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-05
     DUF2730  31 kredleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlsh 91 
                  + d+++l+  +e++++r+t+le kv++L +++d  kL++ +   + ++++++++++q+ h
  CDO68665.1 111 VKRDVAELKPRMEDIETRMTNLENKVDKLENKVD--KLETRM---DFKFSQVDRKLDQILH 166
                 4678889989999999999999999999876654..666555...3456666666666655 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.3   1.9e-05    0.0052      65     103 ..     116     154 ..      97     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.9e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS
  Prefoldin_2  65 eeLeerketlekeiktlekqleklekeleelkeelqkkl 103
                  +eL+ r+e++e+++++le++ +kle+++++l++    k+
   CDO68665.1 116 AELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKF 154
                  578889999999999999999999999999988766555 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   1.9e-05    0.0051      63     131 ..      81     149 ..      45     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.9e-05
       ATG16  63 asasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleae 131
                 + as+ ++ +s +++ l q+ ++l+ e+a++ +  +el+ r  + ++ +  le+k  + e+++++le++
  CDO68665.1  81 TPASSVSTISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETR 149
                 222334567788889999999999999999999999999999999999999999999999998888876 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.3   2.2e-05     0.006      24      95 ..      92     164 ..      82     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH....HHHHHHHH CS
  Laminin_II  24 qnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss.lsdnisei 95 
                  ++ ++ ++  +++ +++ ++ +v +++  ++d ++ + +Le+++++L++k+ +l+++ + + s + +++++i
  CDO68665.1  92 RDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSqVDRKLDQI 164
                 4677777888888999999999999999999999999999999999999999999999998777799998888 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   2.5e-05    0.0068      33      72 ..     119     158 ..      95     174 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqk 72 
                 k r+++ie++++ l+++++kle+kv+k++ +++    +++
  CDO68665.1 119 KPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVD 158
                 5566666666666666666666666666655543333333 PP

>> Spc29  Spindle Pole Component 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.4e-05    0.0066      75     166 ..      48     148 ..      36     191 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-05
       Spc29  75 elDdkLRrQLReglsrk..........PppkisspglapsdesrldsiyssvkkivelekklddqkleIkeLkreleqqrtvnseLqekvaeleeevkr 163
                   D+  R   R  +sr           P p   +p+ + s  s    + + v++  +l+  +   k  + eLk  +e+ +t   +L +kv++le++v++
  CDO68665.1  48 SSDKLFRMGDRSSNSRAtfgshelipaPAPGRATPASSVSTIS-SRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDK 145
                 4455556666777777666666555322222222222222222.22344556666777779999999******************************99 PP

       Spc29 164 laa 166
                 l++
  CDO68665.1 146 LET 148
                 985 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.065        18       7      37 ..      99     129 ..      94     133 .. 0.81
   2 !   11.5   0.4    0.0011      0.29       1      23 [.     135     150 ..     128     167 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.065
   FlaC_arch   7 nklsklsteletvkkeneelsksveelkenV 37 
                 ++  +l++e++ vk++  el+   e+++ + 
  CDO68665.1  99 QESTRLQIEMAAVKRDVAELKPRMEDIETRM 129
                 5667899999999999999999999999775 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0011
   FlaC_arch   1 ridelEnklsklsteletvkken 23 
                 ++d+lEnk++kl+t        +
  CDO68665.1 135 KVDKLENKVDKLET-------RM 150
                 45555555555555.......33 PP

>> PEARLI-4  Arabidopsis phospholipase-like protein (PEARLI 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.4     3e-05     0.008     199     259 ..      91     151 ..      83     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-05
    PEARLI-4 199 erdvllkkqEmekqekelaekEKeikevrekvtemaaklgelemkrarlekrlaflssKve 259
                  rdv+   qE  + + e+a   ++++e++ +++++++++++le k  +le++++ l+ +++
  CDO68665.1  91 SRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMD 151
                 5788888888888889999999999999999999999999999999999888888777765 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.0   0.00011     0.029      27      66 ..     122     169 ..      85     184 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 0.00011
     NPV_P10  27 vddvqenlpdvtelnekLdaqsaqLaelet...........kvenIqdiLn 66 
                 ++d+++ + +   l++k+d++ +++++let           k+++I   L 
  CDO68665.1 122 MEDIETRMTN---LENKVDKLENKVDKLETrmdfkfsqvdrKLDQILHALG 169
                 3333333322...22333333333333333333333322225555555554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   3.3e-05    0.0089     130     220 ..     118     233 ..      90     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.3e-05
     DUF4407 130 a......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.....................gtgttgvaGkgpaakekkaqldaaqaelae 201
                         ++++++le+++++l++++d++e+r+d +  +++++ld+                       +++  +++G g   + +++ ld+a++ l  
  CDO68665.1 118 LkprmedIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKLDQILhalgsgagrasmsvpdlpasaTDRGARRRGTGGGGTFRQNILDRARNILHR 216
                 1444555999***********************************877888888877777777777777555555666666666699999999999999 PP

     DUF4407 202 lkakldatarlaalraela 220
                 ++++  at+ l +l++e+ 
  CDO68665.1 217 VTNE--ATTGLRELEDEAI 233
                 9999..8888888877754 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1   6.3e-05     0.017      78     145 ..      96     163 ..      85     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.3e-05
        ADIP  78 rlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqyahelkkkdreiek 145
                  l +++++l+ e+a+v+++ ++l+ ++++ e+ + n+  ++ +l+n++++++t +   + + dr++++
  CDO68665.1  96 HLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKLDQ 163
                 56677788899999999999999999999999999999999999999999999888888887777665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.3e-05     0.017      16      66 ..     116     162 ..      83     174 .. 0.45

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.3e-05
  Baculo_PEP_C  16 ldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrld 66 
                    +L + +++i   ++ + ++l++ +d++e+++++l++++    +++d++ld
    CDO68665.1 116 AELKPRMEDI---ETRM-TNLENKVDKLENKVDKLETRMDFKFSQVDRKLD 162
                   2333333333...2222.333333333333333333333333333333333 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.5   0.00011     0.029      13      69 ..      94     150 ..      92     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 0.00011
        ZapB  13 iqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkLLgkl 69 
                 + +++++ t+Lq e++++k++++elk +++ +e    +l++   +++++++kL  ++
  CDO68665.1  94 VTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 6789*****************************999999999999999999996666 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.4   7.3e-05      0.02      24      53 ..     119     148 ..     109     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  24 kakeeeleervkeLeeeNaqLrqkveqLek 53 
                 k ++e++e r+ +Le++ ++L++kv++Le+
  CDO68665.1 119 KPRMEDIETRMTNLENKVDKLENKVDKLET 148
                 669*************************97 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.0   0.00033      0.09      21      47 ..     124     150 ..      97     168 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00033
         CLZ  21 kagaeqkeleekverLessLeaLqtrl 47 
                 + ++   +le+kv++Le++++ L+tr+
  CDO68665.1 124 DIETRMTNLENKVDKLENKVDKLETRM 150
                 334455566666666666666666665 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.5   7.9e-05     0.022     190     235 ..     116     161 ..      84     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.9e-05
                 SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
      FliD_C 190 gtlqtasknltkqikdldkkiedldkrletleerlkkqfaalekav 235
                   l+ + + +++++++l++k+++l++++++le r+  +f++ ++ +
  CDO68665.1 116 AELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKL 161
                 4566788899999999999999999999999999999999988655 PP

>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.33        90      52      92 ..      83     123 ..      79     126 .. 0.89
   2 ?   10.8   0.0    0.0019      0.51       3      55 ..     124     178 ..     122     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.33
                 HHTS----HHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHH CS
        HsbA  52 aqasapltdeealalaqavqtLepdvkaaldaliaKkpafd 92 
                 a++ ++++  + + l+q+ ++L+ ++ a+  ++++ kp ++
  CDO68665.1  83 ASSVSTISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRME 123
                 67889999********************9999999999887 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHHHHH--S.H...HHHHHHHHHHHHHHHHHHHHHHHTS CS
        HsbA   3 tvisdittistavtaldtavnafnG.g.asalpilsasnalvsaikkattdaqas 55 
                 ++ + +t+++++v++l + v++      ++  ++  + +++ +a+ +++  a+ s
  CDO68665.1 124 DIETRMTNLENKVDKLENKVDKLETrMdFKFSQVDRKLDQILHALGSGAGRASMS 178
                 78999******************9996699***************9998877765 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.9   0.00011     0.029      48     118 ..      93     157 ..      86     168 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00011
         GAS  48 elseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekv 118
                 ++ ++ qe  rl+ ++ +++++v+eL+ ++++ e    +++nl++++ +le+++ +l+   +    +f++v
  CDO68665.1  93 DVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIET---RMTNLENKVDKLENKVDKLETRMD---FKFSQV 157
                 55566667777777777777777777777766665...666666666666666666665433...334444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.0   6.8e-05     0.019     195     256 ..      88     149 ..      80     168 .. 0.71
   2 ?   -2.3   0.0       5.9   1.6e+03     157     186 ..     206     235 ..     204     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-05
        Spc7 195 sidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 +i + ++  l +e ++l+ e+++ k+++ael+ ++e++e+++++l+++ ++le+++ + e  
  CDO68665.1  88 TISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETR 149
                 55566666666777777777777778888888888888888888887777777777766544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.9
        Spc7 157 lLekqeeeldellpeleeekaeleeelekl 186
                  L++ ++ l+++ +e ++   ele+e+ ++
  CDO68665.1 206 ILDRARNILHRVTNEATTGLRELEDEAIEE 235
                 577788888888888888888888887555 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1    0.0001     0.028     687     756 ..      84     153 ..      34     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
         FPP 687 keenkllkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcm 756
                 ++++  ++ ++++l  e + l++e++  + ++ +lk +++++E  +++l+ ++++l++   ++et ++ +
  CDO68665.1  84 SSVSTISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFK 153
                 5667788899999999999999999999999999999999999999999999999999999999987644 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.2   0.00052      0.14      19      58 ..     117     151 ..      99     169 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00052
  ABC_tran_CTD  19 aLEeeiaeleaeladpelysdpeklaelsaeleeleaeLe 58 
                   +L  +++++e+++ + e     +k+ +l ++ ++le+  +
    CDO68665.1 117 ELKPRMEDIETRMTNLE-----NKVDKLENKVDKLETRMD 151
                   44444444444444333.....333333333333333333 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   0.00013     0.035     220     282 ..     100     166 ..      86     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
        RmuC 220 rqeaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkkle...gnilrkaekl.k 282
                 ++ +++ +++ + + ++el+ ++e +++++++l++k++k+++++dk+ +++    +++ rk++++ +
  CDO68665.1 100 ESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDfkfSQVDRKLDQIlH 166
                 566788889999999*******************************888888888888888887744 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.0   0.00015      0.04      43     104 ..      88     149 ..      79     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00015
   Laminin_I  43 eilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnikeilek 104
                  i+ + +++L+qe  +Lq ++  v ++  +++ ++e++  + ++L+ k+ kl++++  +  +
  CDO68665.1  88 TISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETR 149
                 567789*************************************************9988665 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.1    0.0002     0.054      15      71 ..      95     151 ..      86     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0002
  TMF_DNA_bd  15 aqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlk 71 
                 + L +E ++L+ +  + +  + +L+  +++ e+ +++l++k++kle ++++le r++
  CDO68665.1  95 THLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMD 151
                 66778888888888888888999******************************9975 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00018     0.048      94     135 ..     109     150 ..      96     176 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00018
   PspA_IM30  94 kslekqaealetqlaqqrsaveqlrkqlealetkieelkakk 135
                 +  + ++++l+  ++  ++ + +l++++++le k+++l++ +
  CDO68665.1 109 AAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 444444555555555555555555555555555555544443 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.9   0.00012     0.032      16      58 ..     108     150 ..      94     167 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 0.00012
  Tropomyosin_1  16 aeeleekvKeleqenlekeqeiksLtkknqqleeevekleekl 58 
                    + +++ +v el  + ++ e  +++L++k+++le++v+kle+++
     CDO68665.1 108 MAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                    3344444455555555555555555555555555555555544 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.4   0.00024     0.066      24      81 ..      92     150 ..      83     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00024
        BRE1  24 keltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLke.l 81 
                  ++t+l ++ +rl+ e+a  ++   +++  ++++e+ + +L ++++K   ++++L+  +
  CDO68665.1  92 RDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETrM 150
                 68999*************************************************98754 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.7   0.00024     0.066      34     103 ..      90     158 ..      81     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00024
     DUF1640  34 slekvakslvskselekseylqkaalselrkevqisersefaalrseteklqreleklkqkLreeidklk 103
                 s + v++ + + + l++++  +k +++el+  ++  e + +++l+++ +kl+++++kl++++  + +++ 
  CDO68665.1  90 SSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIE-TRMTNLENKVDKLENKVDKLETRMDFKFSQVD 158
                 5666777777788899999999999999999999987.56889999999999999999999987777665 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   0.00022     0.061     167     216 ..     101     150 ..      83     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00022
      Cluap1 167 ekalkeaikkvkeelektkkalenlesdeanLeakiekkkqeleraqkrL 216
                  ++l+ ++ +vk++++++k ++e++e+  +nLe+k++k ++ +++ ++r+
  CDO68665.1 101 STRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 45678888999999999999999999999999999999999999999997 PP

>> GPS2_interact  G-protein pathway suppressor 2-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.1    0.0008      0.22       5      77 ..      69     142 ..      65     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0008
  GPS2_interact   5 vEaiSptlpseaeqeqelvpsrlsKd..eLlqnidkvDREiakveqqiskLkkkqkeleeeaakpkeeekpveps 77 
                    +E i  + p  a++  ++v++ +s+d  +L+q+  +   E+a v +++++Lk + +++e++ ++ +++  + e++
     CDO68665.1  69 HELIPAPAPGRATPA-SSVSTISSRDvtHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENK 142
                    666766667766666.4446667777446******************************9988876666665555 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.9   0.00047      0.13      39      89 ..     100     146 ..      93     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00047
  Snapin_Pallidin  39 lnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRaekL 89 
                      ++++L+ +e a+   v  d+ e + ++  i+ rm++l++++ kl+ +++kL
       CDO68665.1 100 ESTRLQ-IEMAA---VKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKL 146
                      555554.33333...477888889999999999999999999999999998 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00033     0.091      66     136 ..      80     150 ..      74     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00033
  MscS_porin  66 kkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrL 136
                 +++++s  ++++   + L q+ +  + ++++++++ a+l+ +   ++tr++ + ++  +   + +++++r 
  CDO68665.1  80 ATPASSVSTISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 567889999999999*************************************9999999999999999876 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   0.00022      0.06     118     162 ..     112     156 ..      85     169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00022
  Ax_dynein_light 118 eqgkselekkikeLeeekeelekqvaelkaklealekrekerrqe 162
                      +++ +el+ +++++e++  +le++v +l++k+++le r   + ++
       CDO68665.1 112 KRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQ 156
                      366778888888888888888888888888888888887655555 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   0.00047      0.13      90     131 ..     101     142 ..      79     169 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00047
                 CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  90 ilrlketidaqesnirvLqnvlesneqkiqkLeqdidqkerk 131
                  +rl+ ++ a  + + +L+  +e+ e ++++Le+++d++e+k
  CDO68665.1 101 STRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENK 142
                 444444444444455555555555555555555555544433 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00038       0.1      40      92 ..      95     147 ..      78     173 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00038
     DUF3450  40 dklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeie 92 
                 ++l +e++ l+ e+ a+k+ +++l+   e  e  ++++e+++++le++ +++e
  CDO68665.1  95 THLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLE 147
                 33444444444444444444444444444444444444444444444444333 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.8   0.00051      0.14      27      61 ..     114     148 ..     103     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  27 eieeLerrvkaLekeNksLkseleelkkevekLks 61 
                  ++eL+ r++ +e+ +++L +++++l+++v+kL++
  CDO68665.1 114 DVAELKPRMEDIETRMTNLENKVDKLENKVDKLET 148
                 57899999999999999999999999999999976 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3    0.0003     0.082     386     460 ..      80     156 ..      28     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
    Macoilin 386 slpnnqlskkda..lvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsa 460
                   p +++s+ +   ++ L ++  +L+ e++a ++   el+ +++   ++  +l +++++l+++ d+l t+++   s+
  CDO68665.1  80 ATPASSVSTISSrdVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQ 156
                 55666665544321569999**************************************************9866554 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00037       0.1     405     470 ..     102     168 ..      84     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
      AAA_13 405 eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaae.einkeLkaf 470
                  +l+ e+ + k+++++l+  +e+ e+++++ e+++ kle+++  Le+++  +   ++ ++ ++L+a 
  CDO68665.1 102 TRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDrKLDQILHAL 168
                 3455666677778888888888888888888888888888888888877766666653566666666 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   0.00063      0.17      24      92 ..      89     157 ..      85     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00063
                 HCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHH CS
    Spectrin  24 lssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeL 92 
                 +ss+d+ + ++e  +l+ ++ a+++++a+ ++r++++++  ++l+++ ++ + ++ +    ++ ++ ++
  CDO68665.1  89 ISSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQV 157
                 678999999999999999999999999999999999999999997776555555555555555555555 PP

>> DUF3086  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2    0.0006      0.16       4      44 ..     121     161 ..     118     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0006
     DUF3086   4 alkeleerkqalqieveqLerrkeriekelrtsfaGvsqdl 44 
                 +++++e+r ++l+ +v++Le++ +++e+ +  +f+ v  +l
  CDO68665.1 121 RMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKL 161
                 6899***************************9999876665 PP

>> STAT_alpha  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00054      0.15       5      52 ..     112     159 ..     108     247 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00054
  STAT_alpha   5 eqrleelrskvqeteqdirkLedeqeeFdfqyqelqkleqeraesekk 52 
                 ++ ++el+ +++++e  + +Le++ ++++ ++ +l+ + + + ++ ++
  CDO68665.1 112 KRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDR 159
                 566777777777777777777777777777777777663333333332 PP

>> CEP209_CC5  Coiled-coil region of centrosome protein CE290
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.5    0.0088       2.4       2      43 ..     108     149 ..      93     165 .. 0.52
   2 ?    3.5   0.0      0.27        74      86     119 ..     213     246 ..     205     251 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0088
  CEP209_CC5   2 miqLkedkakleeelkkleeerrkaeskavelelklkgLeel 43 
                 m+++k+d a+l+ +++ +e   +++e+k+  le k   Le +
  CDO68665.1 108 MAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETR 149
                 444444444444444444444444444444444444444444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.27
  CEP209_CC5  86 ylknlieeqertisklEeeivqlnkvheerqlaw 119
                  l+++++e    +++lE+e ++ +  h  rq+a+
  CDO68665.1 213 ILHRVTNEATTGLRELEDEAIEEEGGHTHRQAAA 246
                 68999999999*****************999986 PP

>> BRI3BP  Negative regulator of p53/TP53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00073       0.2     157     178 ..     128     149 ..     117     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00073
      BRI3BP 157 sgasleakvrsLerqvrelnkr 178
                   ++le+kv++Le++v +l+ r
  CDO68665.1 128 RMTNLENKVDKLENKVDKLETR 149
                 6789***************998 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7    0.0046       1.3      24      59 ..     112     147 ..      94     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0046
  TRAF_BIRC3_bd  24 nrEverssttieaverqrrldqekieaLekKvrqLe 59 
                    +r v   +  +e++e    + ++k++ Le+Kv +Le
     CDO68665.1 112 KRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLE 147
                    677777888888888888888999999999999988 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   0.00064      0.17      60     108 ..     102     150 ..      93     164 .. 0.84
   2 ?   -1.3   0.0       6.6   1.8e+03      73     106 ..     204     237 ..     202     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00064
      Nsp1_C  60 skLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkeleellskl 108
                 ++L+ e+ +++++ +++  ++e ie+  ++Le+ +d++E+++++l  ++
  CDO68665.1 102 TRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 5688889999999999999999999999999999999999999987654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 6.6
      Nsp1_C  73 qnkidqeLeyiesqqdeLeslLdnyEkeleells 106
                 qn +d+  +++++  +e ++ L ++E+e+ e  +
  CDO68665.1 204 QNILDRARNILHRVTNEATTGLRELEDEAIEEEG 237
                 7788888899999999999999999998766554 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   0.00093      0.25      88     141 ..      95     150 ..      30     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00093
  EMP24_GP25L  88 s....kkvsfdievgseasdykdsak.kekletleselkkleekldsikreqkylrere 141
                  +     + +++ie+ + ++   d+a  k  +e++e+++ +le+k+d+++++++ l++r 
   CDO68665.1  95 ThlvqESTRLQIEMAAVKR---DVAElKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                  1455556678888865443...4555588888888888888888888888888888775 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00095      0.26      92     155 ..     107     170 ..     100     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00095
  Bacillus_HBL  92 veavdkkdkaellellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilag 155
                   + a+ k d ael+ ++e++++ +++ +++v++l +++ kl+++++ + ++ + ++d++   l++
    CDO68665.1 107 EMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKLDQILHALGS 170
                   555568999*************************************999999999998887776 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6     0.002      0.55      18      65 ..      99     146 ..      87     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.002
  TolA_bind_tri  18 qlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDer 65 
                    q  ++lq ++ a +++++eL+  +E+ + ++ +le++  +l +++D++
     CDO68665.1  99 QESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKL 146
                    566788999999999999999999999999999988877777777765 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2     0.001      0.28     203     278 ..      90     165 ..      36     175 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.001
       FAM76 203 netskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakeki 278
                 ++   ++l ++s+   ++++ +k ++a+lk ++e  ++ + + + k+ +l  +  + e+++  k+++++++ ++ +
  CDO68665.1  90 SSRDVTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRKLDQIL 165
                 2222334455555556777777777777777777777777777777777777777777777777777766665554 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4    0.0012      0.33     667     714 ..     109     156 ..      83     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
    Prominin 667 lplessvkklkksvkkldeensdlqesikkllaaveraenflkkngse 714
                   +++ v++lk ++++++++ ++l+++++kl ++v+++e  ++ + s+
  CDO68665.1 109 AAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQ 156
                 457888999999999999999999999999999999999877766665 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.0    0.0032      0.86      24      48 ..     124     148 ..     116     158 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0032
       HSBP1  24 qilsriDdMssriDdLEksiadlmt 48 
                 +i +r+ ++++++D LE+ +++l t
  CDO68665.1 124 DIETRMTNLENKVDKLENKVDKLET 148
                 4566777777777777777777665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.5   0.00052      0.14      62     116 ..      95     149 ..      85     168 .. 0.57
   2 ?   -1.7   0.1       9.6   2.6e+03     104     124 ..     219     239 ..     213     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00052
  CENP-F_leu_zip  62 eelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqe 116
                      +l +e ++l+++++a++++  eL+  +++   r+ +Le+   +len + ++E  
      CDO68665.1  95 THLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETR 149
                     4445555555555555555555555555555555555555555555555555543 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 9.6
  CENP-F_leu_zip 104 sslenlleekEqekvqmkees 124
                      + +  l+e+E+e ++++  +
      CDO68665.1 219 NEATTGLRELEDEAIEEEGGH 239
                     556778999999988877655 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4     0.081        22      19      51 ..      94     126 ..      89     127 .. 0.73
   2 ?   10.7   0.4    0.0022      0.61       3      43 ..     120     160 ..     118     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.081
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
        SlyX  19 ieeLndvvaeqqqqidrlqrqlrllaerlkele 51 
                 +  L ++ ++ q ++++ +r +++l+ r++++e
  CDO68665.1  94 VTHLVQESTRLQIEMAAVKRDVAELKPRMEDIE 126
                 566777778888888888888888888887765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   3 erleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrll 43 
                  r+e++E++++ +e+ +++L + v + + ++d    q+++ 
  CDO68665.1 120 PRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRK 160
                 599*****************999988888887665555544 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.78   2.1e+02       6      33 ..      91     118 ..      86     127 .. 0.75
   2 ?    7.5   0.4      0.02       5.4       2      21 ..     129     148 ..     121     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.78
         LPP   6 ssqVsqLkskvdqlssdvnsakaaaqaa 33 
                 s +V +L ++   l+ +++++k ++++ 
  CDO68665.1  91 SRDVTHLVQESTRLQIEMAAVKRDVAEL 118
                 5678888888888888888888777665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.02
         LPP   2 ldeLssqVsqLkskvdqlss 21 
                 +++L + V +L++kvd+l+ 
  CDO68665.1 129 MTNLENKVDKLENKVDKLET 148
                 66777777777777777764 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9    0.0059       1.6      23      73 ..     110     160 ..      91     170 .. 0.78
   2 ?    0.2   0.1       3.4   9.2e+02      26      51 ..     205     230 ..     203     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0059
      DUF948  23 klkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdpl 73 
                  +k+ + e++ ++e++e +++++ ++v++l +kv +l   +  k  +vd+ 
  CDO68665.1 110 AVKRDVAELKPRMEDIETRMTNLENKVDKLENKVDKLETRMDFKFSQVDRK 160
                 456777788888888888888888888888888888888888888888765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 3.4
      DUF948  26 ktldeaaatieelekqvdpilkeved 51 
                 ++ld+a++ ++ ++++++  l+e+ed
  CDO68665.1 205 NILDRARNILHRVTNEATTGLRELED 230
                 56788888888888888877777665 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.7    0.0016      0.45      22      67 ..      94     139 ..      91     142 .. 0.92
   2 ?    6.6   0.4     0.036       9.7      40      64 ..     126     150 ..     121     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0016
      Csm1_N  22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkkq 67 
                 v+ lv+E + L+ ++   ++ + +Lk +++ +e+++ +le++ +k 
  CDO68665.1  94 VTHLVQESTRLQIEMAAVKRDVAELKPRMEDIETRMTNLENKVDKL 139
                 889************************************9998775 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.036
      Csm1_N  40 dqeiesLkeqlaeleekvkeleerr 64 
                 ++++ +L++++++le+kv++le+r 
  CDO68665.1 126 ETRMTNLENKVDKLENKVDKLETRM 150
                 6778899999999999999999875 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.9     0.015       4.1       9      41 ..     118     150 ..      91     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.015
       Spc24   9 iakelsdleselesleselaelkeeleeleees 41 
                 +   ++d+e+ +++le++ ++l++++++le+  
  CDO68665.1 118 LKPRMEDIETRMTNLENKVDKLENKVDKLETRM 150
                 555677888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1456  (0.0812092); expected 358.6 (0.02)
Passed bias filter:                     1163  (0.064867); expected 358.6 (0.02)
Passed Vit filter:                       329  (0.0183502); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              66  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 1673.39
//
Query:       CDO68666.1  [L=453]
Description: hypothetical protein BN946_scf184790.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-24   85.4   0.2    7.3e-24   83.6   0.2    2.1  1  G-patch_2  G-patch domain
     0.0034   17.3   0.7     0.0084   16.0   0.7    1.8  1  G-patch    G-patch domain


Domain annotation for each model (and alignments):
>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.2   8.2e-28   7.3e-24       1      60 [.     247     306 ..     247     307 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 8.2e-28
   G-patch_2   1 peeasleeyeevPVeeFGaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGakpa 60 
                 pe+a+l++ye+vPV++FGaAlLrGMGWkeg++ +k++kg v+p  p+ Rp++lG+Gak++
  CDO68666.1 247 PEPATLDDYERVPVSQFGAALLRGMGWKEGTAASKKGKGLVEPWLPQSRPALLGIGAKEK 306
                 89********************************************************87 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.7   9.3e-07    0.0084       3      45 .]     262     304 ..     260     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.3e-07
     G-patch   3 niGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGlGak 45 
                  +G+ +L+ mGWk+G+   kk++G +eP   + ++   G+Gak
  CDO68666.1 262 QFGAALLRGMGWKEGTAASKKGKGLVEPWLPQSRPALLGIGAK 304
                 689*************999*********999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2976.99
//
Query:       CDO68667.1  [L=913]
Description: hypothetical protein BN946_scf184790.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-15   55.0   9.4      6e-15   55.0   9.4    2.3  2  Sec2p          GDP/GTP exchange factor Sec2p
  ------ inclusion threshold ------
      0.027   14.6   0.0       0.15   12.1   0.0    2.3  2  DUF5597        Domain of unknown function (DUF5597)
      0.032   13.1  18.9      0.011   14.6  10.2    2.2  2  Spc7           Spc7 kinetochore protein
       0.14   11.9   6.6        1.7    8.5   0.8    3.2  2  DivIC          Septum formation initiator
       0.55   10.5   4.2         14    6.1   0.1    2.9  3  KxDL           Uncharacterized conserved protein
       0.74    8.3   7.1        2.2    6.7   7.1    1.7  1  Herpes_UL6     Herpesvirus UL6 like
       0.86   10.0   9.9       0.37   11.2   5.4    2.4  2  DUF4200        Domain of unknown function (DUF4200)
       0.96    9.7   0.0       0.96    9.7   0.0    3.2  4  CTU2           Cytoplasmic tRNA 2-thiolation protein 2
          1    9.4  10.5        3.2    7.8   1.8    3.1  3  DUF1664        Protein of unknown function (DUF1664)
        1.1    9.3   6.5       0.51   10.3   2.1    2.3  2  Noelin-1       Neurogenesis glycoprotein
        1.7    8.9   4.1         10    6.5   0.1    3.0  3  HALZ           Homeobox associated leucine zipper
        3.7    6.9  18.8        1.7    7.9   8.0    2.1  2  Rab5-bind      Rabaptin-like protein
        7.5    5.1  11.7         16    4.0  11.7    1.5  1  AAA_13         AAA domain
        8.9    5.3  12.3        3.7    6.5   5.1    2.2  2  Atg14          Vacuolar sorting 38 and autophagy-related subu


Domain annotation for each model (and alignments):
>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.8       1.1   1.4e+03      34      74 ..      50      91 ..      48     114 .. 0.58
   2 !   55.0   9.4   4.7e-18     6e-15       2      83 ..     140     221 ..     139     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
                HHHHHHHH.HHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSS CS
       Sec2p 34 ANkmVaaa.rkekealekkneklkeqLkeketlleslqeqLk 74
                A  mV++  r + ++l  + ++l+++L  +   +++l+++L+
  CDO68667.1 50 AQAMVIESlRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELH 91
                556666652345566666667777766666666666666663 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 4.7e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTX CS
       Sec2p   2 lkeekkkreeaekekkklekEledLtasLFeeANkmVaaarkekealekkneklkeqLkeketlleslqeqLkeLkevlekm 83 
                  +ee ++r +ae++++++e+El+dL+a LF++AN+mVa+ar+ +++  +k e+ ++ L+ +e+++ +lq+qL+ L+   ek 
  CDO68667.1 140 ATEEAARRGQAETARAEIEQELDDLSAGLFNQANTMVAEARMAEARSARKLEETEAALRGAEEVVGALQAQLQALQAEKEKA 221
                 57999**********************************************************************8765555 PP

>> DUF5597  Domain of unknown function (DUF5597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.3   1.1e+04      54      73 ..      37      56 ..       9      58 .. 0.63
   2 ?   12.1   0.0   0.00012      0.15       9      82 ..     188     265 ..     185     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.3
     DUF5597 54 fwdeaapgseepegggliiq 73
                ++++ +  +++p + +++i+
  CDO68667.1 37 QDTKLQSHNTDPDAQAMVIE 56
                25556677888888888886 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
     DUF5597   9 aplaplllkaqgegkvkgfle......eagektqqielgdweltvrygfpqfwdeaapgseepegggliiqlgedeflla 82 
                 ++l+++ ++++g+++v g+l+      +a+++++  +++d+++++  g++   ++ ++++   +++ ++ ++  +efl+ 
  CDO68667.1 188 RKLEETEAALRGAEEVVGALQaqlqalQAEKEKADRRVEDMRARMGKGKW--VERSPDSDRGRRPRLMVTHVPYNEFLVF 265
                 56788889999********99999999999999999************99..77899*********************96 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.4     0.022        29     198     251 ..      38      91 ..       3     110 .. 0.45
   2 ?   14.6  10.2   8.6e-06     0.011     133     243 ..     111     232 ..     111     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeia 251
                  ++L++   + +++   ie++++++++l +q+ +l++k+    ++ s+le+e+ 
  CDO68667.1  38 DTKLQSHNTDPDAQAMVIESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELH 91 
                 444444444444444444444444444444444444444444444444444432 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8.6e-06
        Spc7 133 RmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe...........aaeelesidkeeLeelreelaelkaeieekkk 220
                 R+q+l+ L +gl  + + ++++ ++L+++  e  +   + e+ +ae+e+el++l +           +a+  e+    +Lee+  +l+ +++ + ++++
  CDO68667.1 111 RTQHLSALSTGLLVEKSHVTAELNRLMEKATEEAARRGQAETARAEIEQELDDLSAglfnqantmvaEARMAEARSARKLEETEAALRGAEEVVGALQA 209
                 89******************************************************9999888888545545556699999999999999999999999 PP

        Spc7 221 elaelqeqleeleekieelkeqk 243
                 +l+ lq+++e+ + ++e++++++
  CDO68667.1 210 QLQALQAEKEKADRRVEDMRARM 232
                 99999999999999999998775 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3     0.017        22      28      52 ..      50      74 ..      32      90 .. 0.68
   2 ?    8.5   0.8    0.0013       1.7      24      51 ..     202     229 ..     191     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 28 alqaelaklkaeneeLeaevkdLks 52
                a+   +++l+a+ ++L ++v++L++
  CDO68667.1 50 AQAMVIESLRAQVQDLFSQVSQLNN 74
                5555677777778888877777743 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  24 qeiaalqaelaklkaeneeLeaevkdLk 51 
                 + + alqa+l++l+ae+e+ +++v+d++
  CDO68667.1 202 EVVGALQAQLQALQAEKEKADRRVEDMR 229
                 55779********************996 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1      0.04        51      41      82 ..      39      80 ..      35      83 .. 0.91
   2 ?    3.9   0.4      0.05        64      17      75 ..      50     108 ..      45     116 .. 0.76
   3 ?    6.1   0.1     0.011        14      15      54 ..     197     236 ..     180     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.04
        KxDL 41 erlaklrarfkqgtkllkevkkdLesifkkirslkaklakky 82
                ++l++++++   ++ ++ +++++ + +f+++++l+ kl + y
  CDO68667.1 39 TKLQSHNTDPDAQAMVIESLRAQVQDLFSQVSQLNNKLVRSY 80
                688999999999999**********************98887 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.05
        KxDL  17 lQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslk 75 
                 +Qa +   l ++ + L  +  +++++l +  +r+ +    l+ + ++L++ + ki++l+
  CDO68667.1  50 AQAMVIESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELHVTSSNLRQATLKISQLE 108
                 57777777777777787888888888888888888888888888888888888887775 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.011
        KxDL  15 lalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgt 54 
                 l+  ++++g l+++ + L++  +++++r++++rar+ +g+
  CDO68667.1 197 LRGAEEVVGALQAQLQALQAEKEKADRRVEDMRARMGKGK 236
                 555578999**************************98875 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.1    0.0017       2.2     350     440 ..      38     126 ..      18     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
  Herpes_UL6 350 ssekteqglkksvsnsvikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakkeakarevdlltsstdaslenlpessalsk 440
                  ++  +++     +  vi++l  q++++f ++++L+++      ++++le+eL+ + ++    +++ +++ l+ +++++l+ l++   ++k
  CDO68667.1  38 DTKLQSHNTDPDAQAMVIESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELHVTSSNLR--QATLKISQLELERTQHLSALSTGLLVEK 126
                 4455555666667789*************************************98844444..3445555566666666666655444444 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.94   1.2e+03      81     103 ..      54      76 ..      39     113 .. 0.80
   2 ?   11.2   5.4   0.00029      0.37       1     106 [.     123     228 ..     123     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.94
     DUF4200  81 eikklkaeietlkseiekleekl 103
                  i+ l+a++++l s+ ++l +kl
  CDO68667.1  54 VIESLRAQVQDLFSQVSQLNNKL 76 
                 57778888888888888877776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00029
     DUF4200   1 llekkremfevqealeakkeeiqrleealkqreeelekkeqeleedl.lkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiek 98 
                 l+ek +   e+++ +e++ ee +r+ +a + +++e+e++   l   l ++ + ++ e     ar  +k ee + + +  e+ +  l+a++++l++e+ek
  CDO68667.1 123 LVEKSHVTAELNRLMEKATEEAARRGQAET-ARAEIEQELDDLSAGLfNQANTMVAEARMAEARSARKLEETEAALRGAEEVVGALQAQLQALQAEKEK 220
                 678888888999999999999888776655.5566666666666655388999********************************************** PP

     DUF4200  99 leekleey 106
                  ++++e++
  CDO68667.1 221 ADRRVEDM 228
                 ****9986 PP

>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       2.9   3.7e+03      39      39 ..     112     112 ..      55     196 .. 0.57
   2 ?    9.7   0.0   0.00075      0.96      40      78 ..     350     388 ..     307     407 .. 0.80
   3 ?   -2.6   0.6         5   6.4e+03      64      92 ..     662     690 ..     650     721 .. 0.52
   4 ?   -2.4   0.4       4.3   5.5e+03      70      70 ..     843     843 ..     800     891 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.9
        CTU2  39 e 39 
                 +
  CDO68667.1 112 T 112
                 1 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00075
        CTU2  40 aeletsekCalCglplddkakewkrtitiselsetesee 78 
                 ++ +t+  CalCg+p+++++ ++ +t t  ++s+t s++
  CDO68667.1 350 HTHNTQIVCALCGMPIYSSSDSQTSTPTTPNSSRTGSHS 388
                 34689999********77777777777776666665554 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5
        CTU2  64 rtitiselseteseeekeelekakeeeee 92 
                 ++i+ s  se e++ee     +++  +++
  CDO68667.1 662 SEIAQSAPSEGEKREEDPPAAQQEIPSSQ 690
                 44444444444444442222222222222 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.3
        CTU2  70 e 70 
                 +
  CDO68667.1 843 T 843
                 2 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.041        53      71     118 ..      44      91 ..      36      96 .. 0.79
   2 ?    7.8   1.8    0.0025       3.2      28     101 ..      86     166 ..      82     181 .. 0.80
   3 ?    6.5   0.9    0.0062         8      40     117 ..     151     232 ..     144     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.041
     DUF1664  71 vdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                  ++  d+q+ ++++++++v+++ +++s++++++    + v++le +l+
  CDO68667.1  44 HNTDPDAQAMVIESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELH 91 
                 556668888889999999999999999999998888888888888776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0025
     DUF1664  28 lsdlmfvTkrslsdavesvs.......kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseige 101
                 l d + vT  +l++a  ++s       ++l  +s+ l   k h +++++r+ +k  e ++   + +   +e++++l++++ 
  CDO68667.1  86 LEDELHVTSSNLRQATLKISqlelertQHLSALSTGLLVEKSHVTAELNRLMEKATEEAARRGQAETARAEIEQELDDLSA 166
                 6788999999999999988622222226889999*********************99999999999888888888887765 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0062
     DUF1664  40 sdavesvskqleqvseslaatkrhLssri..d..rvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskl 117
                 + a +++ ++l+++s+ l ++ + + ++   +  r  +kl+e++++ +  +e v +++ +l++++ + e+ ++ ve++ +++
  CDO68667.1 151 ETARAEIEQELDDLSAGLFNQANTMVAEArmAeaRSARKLEETEAALRGAEEVVGALQAQLQALQAEKEKADRRVEDMRARM 232
                 568899999999999999988888876541131144689*************************************999887 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.1    0.0004      0.51      34      89 ..      48     103 ..      42     114 .. 0.88
   2 ?    0.3   0.2      0.55     7e+02      49      94 ..     173     222 ..     153     227 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
    Noelin-1  34 rDarsrqlrqllekvqnlsqsievldlRtsrdlqyvrktetllktlesklkvveed 89 
                  Da+   + +l ++vq+l  ++ +l+++  r  + v++ e  l+  +s+l++++ +
  CDO68667.1  48 PDAQAMVIESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELHVTSSNLRQATLK 103
                 5899999*******************************************998765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.55
    Noelin-1  49 qnlsqsievldlRtsrdlqy....vrktetllktlesklkvveedrkels 94 
                 + +  + ++ + R +r l++    +r +e+++  l+++l+ +++++++  
  CDO68667.1 173 NTMVAEARMAEARSARKLEEteaaLRGAEEVVGALQAQLQALQAEKEKAD 222
                 44555556777788888875222255678889999999999988776654 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0078        10      21      42 ..      55      76 ..      49      77 .. 0.90
   2 ?   -2.4   0.1       4.7     6e+03      24      41 ..     122     139 ..     118     140 .. 0.85
   3 ?    2.7   0.1      0.11   1.4e+02      16      37 ..     206     227 ..     205     233 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0078
        HALZ 21 ydsLkkenekLkaelqeLkekl 42
                 +sL+++ + L +++ +L++kl
  CDO68667.1 55 IESLRAQVQDLFSQVSQLNNKL 76
                69******************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
        HALZ  24 LkkenekLkaelqeLkek 41 
                 L+ e+    ael++L ek
  CDO68667.1 122 LLVEKSHVTAELNRLMEK 139
                 6678888899*****998 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
        HALZ  16 aLksdydsLkkenekLkaelqe 37 
                 aL+++ ++L++e+ek    ++ 
  CDO68667.1 206 ALQAQLQALQAEKEKADRRVED 227
                 5777777777887775555555 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.9      0.04        51      20     102 ..      57     139 ..      50     143 .. 0.90
   2 ?    7.9   8.0    0.0014       1.7     174     271 ..     133     231 ..     128     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.04
   Rab5-bind  20 elrdqvkklqellrraneqLekerkdkkeLedslkelseetskqvselakrvkksEllleeLqqafskakrniqeqlavlvks 102
                  lr qv+ l +   + n++L +  +   +Led+l+ +s +  +   ++ +   +  + l+ L+     +k +++ +l+ l+++
  CDO68667.1  57 SLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELHVTSSNLRQATLKISQLELERTQHLSALSTGLLVEKSHVTAELNRLMEK 139
                 5899*******************************999999988888888888889999999999999999999999999987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
   Rab5-bind 174 illLkeqiqaEkalkEnlEetlqleierlkeelas..isslkveleeikvekeslekslaektrqldklqtikselEeqlkelekekaaveqlvleekn 270
                 +  L e+   E a++  + et  +eie+  ++l++  ++   + + e ++        l+e+ ++l+   ++++ l +ql+ l++ek ++++ v + + 
  CDO68667.1 133 LNRLMEKAT-EEAARRGQAETARAEIEQELDDLSAglFNQANTMVAEARMAEARSARKLEETEAALRGAEEVVGALQAQLQALQAEKEKADRRVEDMRA 230
                 555556555.55566667778899999988888653355555544444444444488999*******************************99999887 PP

   Rab5-bind 271 k 271
                 +
  CDO68667.1 231 R 231
                 6 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  11.7     0.012        16     295     467 ..      55     232 ..      34     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
      AAA_13 295 veskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeeke 393
                 +es ++++++ + +vs+ +++  ++ + +++l++e+ +++++L+++  ++++   e  ++++  s+   +e  ++  ae+n+l +k  e  a+   ++e
  CDO68667.1  55 IESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELHVTSSNLRQATLKISQLELERTQHLSALSTGLLVE-KSHVTAELNRLMEKATEEAARR-GQAE 151
                 56777788888999999999999999999999999999999999988888888777777777666666555.5666777777777777666543.2334 PP

      AAA_13 394 eakkklelhlv.......eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeL 467
                 +a+ ++e+ l        ++++ ++ e   + ++ ++++e++e++l+ +e+ + +l+++ ++L+++ ++  + +e++   +
  CDO68667.1 152 TARAEIEQELDdlsaglfNQANTMVAEARMAEARSARKLEETEAALRGAEEVVGALQAQLQALQAEKEKADRRVEDMRARM 232
                 444444443323344555888888888888888888999999999999999999999999999999888888888876655 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.1    0.0029       3.7      52     140 ..      45     137 ..      20     159 .. 0.79
   2 ?   -0.7   5.1      0.46   5.9e+02      23     111 ..     135     232 ..     124     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
       Atg14  52 keeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk....kRrsdleslqneleerrkkqiaklqdai 140
                 +++++ +++ i++++a++++l s++++l+++l +  d++s l +e+  ++ +l++   k++    +R++ l++l++ l  ++ +  a+l + +
  CDO68667.1  45 NTDPDAQAMVIESLRAQVQDLFSQVSQLNNKLVRSYDRVSDLEDELHVTSSNLRQATLKISqlelERTQHLSALSTGLLVEKSHVTAELNRLM 137
                 336778889999999999999999999999999999999999999999999999999999999998888888888888766666555555544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.46
       Atg14  23 rlyelrerlaklksekeslkkkiekalegke.........eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdkl 111
                 rl e+ ++ a  + + e+ + +ie++l   +          + ++++++ +++ klee+ +  +  +e +  l+++l+ l++e e++ ++++ +++ +
  CDO68667.1 135 RLMEKATEEAARRGQAETARAEIEQELDDLSaglfnqantMVAEARMAEARSARKLEETEAALRGAEEVVGALQAQLQALQAEKEKADRRVEDMRARM 232
                 67777777777777788888888888888888888887777777788888888888888888888888888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1300  (0.0725082); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 5843.47
//
Query:       CDO68668.1  [L=694]
Description: hypothetical protein BN946_scf184790.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-65  216.5   0.2    4.5e-33  113.9   0.1    2.4  2  SIS       SIS domain
    9.3e-16   58.2   0.0    2.2e-15   57.0   0.0    1.6  1  GATase_6  Glutamine amidotransferase domain
    1.8e-11   44.0   0.0    4.7e-11   42.7   0.0    1.6  1  GATase_7  Glutamine amidotransferase domain
    0.00015   20.8   0.0    0.00024   20.1   0.0    1.3  1  GATase_4  Glutamine amidotransferases class-II
  ------ inclusion threshold ------
      0.026   14.5   0.0       0.77    9.8   0.0    2.6  3  SIS_2     SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.1   1.2e-36   4.5e-33       2     129 ..     376     502 ..     375     504 .. 0.97
   2 !  100.4   0.0   1.8e-32   6.4e-29       2     130 ..     548     676 ..     547     677 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 1.2e-36
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 ++  +ri++ ++Gtsy++a   ++ +ee+++i+v+ve+as++ ++ + +i +dd+++++s+sget+d+++a++++ erga ++++ +  gs+++re+++
  CDO68668.1 376 IRRGRRIVFCACGTSYHSAIATRAIFEELTEIPVSVELASDFLDR-KTPIFRDDVCVFVSQSGETADTILALRYCLERGALCVGVVNTVGSTISRETHC 473
                 66779****************************************.***************************************************** PP

                 EEEEEEECHCSSSHCHHHHHHHHHHHHHH CS
         SIS 101 alyinaepetlvastksltaqlaaldala 129
                  ++ina+pe++vastk++t+q++al ++a
  CDO68668.1 474 GVHINAGPEIGVASTKAYTSQYIALLMMA 502
                 ************************99987 PP

  == domain 2  score: 100.4 bits;  conditional E-value: 1.8e-32
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaae.lakergakiiaITdskgsplaread 99 
                 La++++++++G+G++ya+++e+alk++ei+++++e+ +a+elkhg+lalide+++vi++ +++   ++v++a  + ++r+a++i++++++++++ +++ 
  CDO68668.1 548 LANQRSLLIMGRGYQYATCLEGALKIKEISYMHSEGILAGELKHGPLALIDENMPVIIVMTQDSLYPKVQSAYaQITARKAQPIVVCNEDDDAIPKDC- 645
                 899***********************************************************************************************. PP

                 EEEEEEEECHC..SSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepet..lvastksltaqlaaldalav 130
                    +i++++ +  l+++++ +++ql++++++++
  CDO68668.1 646 --KTIRVPRTVdcLQGILNIIPLQLLSYHLAVM 676
                 ..88888888899****************9985 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   6.1e-19   2.2e-15      10     124 ..      77     203 ..      65     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 6.1e-19
    GATase_6  10 vedevalaHvRlaivglaeeega.qPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall...........eelG.....eevle 90 
                 + ++v +aH+R+a++g + +  + +P+ + ++ ++++vhNG + n+ +lr  l++ +g++f+s++Dte ++ l+                    + vl+
  CDO68668.1  77 FLSQVSIAHTRWATHGPP-SIVNcHPLrSDPKAEFTVVHNGIVTNAAALRLVLQK-RGYKFESETDTEAVAILAkyiydsqpdkrM--SfteliKTVLK 171
                 456799************.77777***99999**********************9.************888777667887777441..3656669999* PP

    GATase_6  91 rlrGmfafaiwdk.rentlilardrlgvkplyyav 124
                 +l+G faf++ ++  +n++++a  r g +pl ++v
  CDO68668.1 172 ELEGSFAFVFKSShYPNEVVTA--RRG-SPLLIGV 203
                 ***********99999999999..444.5666555 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.3e-14   4.7e-11      15      94 ..     101     194 ..      93     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.3e-14
    GATase_7  15 PmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea.............ewgeealerlnGmfAfaiwdeeek.rlllaR 94 
                 P+ s+ + ++++v+nG ++N   lr  L+++g++f++++Dte ++ l ++             e ++ +l++l+G+fAf+   ++   +++ aR
  CDO68668.1 101 PLRSDPKAEFTVVHNGIVTNAAALRLVLQKRGYKFESETDTEAVAILAKYiydsqpdkrmsftELIKTVLKELEGSFAFVFKSSHYPnEVVTAR 194
                 888889999**********************************866666599***************************987655432555555 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.7e-08   0.00024      69     162 ..      77     173 ..      58     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.7e-08
    GATase_4  69 iksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl....egrfePvGsTDsElafCelleelasrfekaepsaeeler.alael 162
                 + s++ +aH R at+G  +  n+hp  R+  + e++  HnG +++ +  +    +  ++   +TD+E +  +l + +  ++++++ s +el + +l+el
  CDO68668.1  77 FLSQVSIAHTRWATHGPPSIVNCHPL-RSDPKAEFTVVHNGIVTNAAALRlvlqKRGYKFESETDTEAV-AILAKYIYDSQPDKRMSFTELIKtVLKEL 173
                 679999*******************6.899999**********88554434777677888899***965.67777888888776666666655234443 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.2   1.1e+04      70      98 ..     125     154 ..     119     157 .. 0.65
   2 ?    1.6   0.0     0.072   2.6e+02      32      57 ..     376     404 ..     370     415 .. 0.75
   3 ?    9.8   0.0   0.00022      0.77      97     137 ..     420     460 ..     410     461 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.2
                 GGSSSSST...THHHHHTT-TTHHHHHHHH CS
       SIS_2  70 alalhtda.eatkssalerdegyakqilrl 98 
                 +l+l+++  +  + ++ e ++ +ak i+++
  CDO68668.1 125 RLVLQKRGyKFESETDTEAVAILAKYIYDS 154
                 566666666667777777777777766665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.072
                 HHTT--EEEEESG...GGHHHHHHTSSST CS
       SIS_2  32 lenggkvlvfGsG...hSaalaeelaara 57 
                 +++g++++ + +G   hSa++   ++ ++
  CDO68668.1 376 IRRGRRIVFCACGtsyHSAIATRAIFEEL 404
                 78999999999985566677666666655 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00022
                 HHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  97 rlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 r++++   Dv + +S+sG+ a  + a++++ erg+  ++++
  CDO68668.1 420 RKTPIFRDDVCVFVSQSGETADTILALRYCLERGALCVGVV 460
                 45788999***************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4457.24
//
Query:       CDO68669.1  [L=175]
Description: hypothetical protein BN946_scf184790.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.095   12.5   0.0       0.26   11.1   0.0    1.7  1  TENA_THI-4  TENA/THI-4/PQQC family


Domain annotation for each model (and alignments):
>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.4e-05      0.26      10     120 ..      20     142 ..      15     156 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.4e-05
                 HHHCSHHHHHHHTT-S-HHHHHHHHHHHHHHHHH.HHHHHHHHHHC.......-SSHHHHHHHHHHHHHHHHCH.......HHHHHHHHHHTT-HHHHH CS
  TENA_THI-4  10 eyinHpFvkalakGtlpreqfqayviqdylylkn.fvrvlaiilsk.......ssdlevrrelesrivdhdgee.......ielhlrlaealGlsreel 93 
                  +++H F  a   Gtlp + +  y+ qd+ y  + ++r+l+  l++       ++d  ++ ++   +vd + +        ++ + +  +a+Gl++   
  CDO68669.1  20 AATEHAFLTAAGTGTLPPALLSLYLSQDRIYAAHaYPRFLGQLLARvpfsslhAPDSPEE-RFHGDLVDVLAGAlvnvrreVAMFAEVEKAFGLPPFA- 116
                 4788***************************87548999985544411111114444444.4444444444444444455566666666666666555. PP

                 CTTT--HHHHHHHHHHHHHHCHS-HHH CS
  TENA_THI-4  94 sktkpspatkayvrylldlarrgslae 120
                  + ++  at+ y++ + +++  gsl +
  CDO68669.1 117 -QWRERKATRDYTAEMARVGALGSLED 142
                 .44444466666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1201.83
//
Query:       CDO68670.1  [L=967]
Description: hypothetical protein BN946_scf184790.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-76  256.4   0.0    5.3e-76  255.4   0.0    1.5  1  Sec23_trunk     Sec23/Sec24 trunk domain
    6.6e-24   83.7   0.2    1.8e-23   82.3   0.2    1.8  1  Sec23_helical   Sec23/Sec24 helical domain
    1.5e-17   64.1   0.0    3.9e-17   62.8   0.0    1.8  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    6.9e-16   58.0   6.5    1.3e-15   57.1   6.5    1.5  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
    1.3e-09   37.8   0.0    2.5e-09   36.9   0.0    1.5  1  Gelsolin        Gelsolin repeat
     0.0025   17.2   0.4     0.0052   16.2   0.4    1.5  1  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger
  ------ inclusion threshold ------
      0.069   13.2   6.3        3.4    7.8   0.3    2.7  2  WW              WW domain


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.0   2.1e-79   5.3e-76       1     240 [.     358     594 ..     358     597 .. 0.96

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 2.1e-79
                  SS--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSS.TSTT-EEEEEEESSSEEEEETSTTSSSSEEEEECHTTSCCSSTSSSSSEETTTTHHHHHH CS
  Sec23_trunk   1 pkppvflFviDvsleaikegelkalkeslkqsLdllP.eepralvglitfdsvvhffelkselrqpkelvvsdlqdvflpladrlLvplseseavled 97 
                  p+p+v++F+iD+s++ai++g+++++ ++++++Ld++P e++r++v++i fd  +hff+l  ++++p +lv+sd++dvflp +++lLv+l es+  +e+
   CDO68670.1 358 PQPAVYVFLIDISHNAIQSGMVATATRTILENLDRIPnEDNRTKVAFIGFDISLHFFSLPADAAEPSMLVMSDIDDVFLPKPTDLLVNLTESRPAIEN 455
                  79***********************************889********************************************************** PP

                  HHHHHHHHSTT-TTC-----HHHHHHHHHHHHCHCTS-EEEEEEESS---SSTTTSS-SBTTSCCTSSTTCHHCHSCSSSCHHHHHHHHHHHCTEEEE CS
  Sec23_trunk  98 lLeelpemfavtagkrperalgpalkaavellkavetggkiivfvgslptvgaggklksredeslldidkekaklvkkadkfYkkLakecvkqgisvD 195
                  lL++l+emf+++  ++  +algpal+aa++l+   ++ggki v++ slp+vga g+lk+red+++l+++ke+a l++ a  fYk++a ec+  ++svD
   CDO68670.1 456 LLSRLNEMFQDN--HTIGSALGPALQAAFKLMA--HIGGKIQVLSASLPSVGA-GALKNREDPKVLGTSKESA-LLQPASPFYKTFAIECSRAQVSVD 547
                  ************..*******************..999***************.*****************55.5555666***************** PP

                  EEEECSS--SHHHHTHHHHTTT-EEEEETTTC..CHHHHHHHHHHHH CS
  Sec23_trunk 196 lFlfsldyvdlaelkqlaeltgGqvvlydsFs..aekdasklkqdlk 240
                  +Flfs+ y d+a+l +l+++t+Gq+++y+ F+  +++da k+ +++ 
   CDO68670.1 548 MFLFSSGYQDVATLACLPRYTAGQTYFYPAFNaaRTEDAIKFAHEFG 594
                  ********************************888899999999986 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.2   7.2e-27   1.8e-23       1     101 [.     696     798 ..     696     800 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 7.2e-27
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH----..---------GGGTTHHHHHHHHHTSTTTS--TT--HHHHHHHHHHHH CS
  Sec23_helical   1 Dqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasg..sspsqlqlpeslklLPlyilallKspafrggnsvpaDervfalslll 94 
                    Dq a+++lla++a++++l+++l+dar+a+ +++v++lsay+  ++ +   +++ql ++e+lk+LP+++l+llK+  +r+++++p+D r++a++ll 
     CDO68670.1 696 DQIAIATLLANKAVERSLTHKLEDARDAVFNKMVEVLSAYKASMTAAgaGASAQLAISENLKMLPVLLLGLLKNVGIRQSAQIPPDLRAYAQCLLT 791
                    899***************************************998878878889****************************************** PP

                    H--HHHH CS
  Sec23_helical  95 slpvdql 101
                    +lp + l
     CDO68670.1 792 TLPSQLL 798
                    **99876 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   1.5e-20   3.9e-17       2      96 .]     603     685 ..     602     685 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.5e-20
                 EEEEEEEEE-TTEEEEEEESSSEECSTBESSEESECSESEEEEEEEETT--EEEEEEESSBTCTTSEEEEEEEEEEEETTSEEEEEEEEEEEEEE CS
    Sec23_BS   2 fnatlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdideklksgkqayiQfatlYthssgerrlRVttvalpva 96 
                 ++a+++vr Sk+l++s ++Gn++ +s         +++  ++++++ +d ++a++++i+++++ + ++++Q+a+l+t++ gerr+RV+t+alp++
  CDO68670.1 603 LEAVMRVRASKNLRMSAFHGNFFVRS---------TDL--LAMPAVPQDLSYAIEIQIEDNIT-APFVVLQTAVLHTTCYGERRIRVITTALPTT 685
                 589***********************.........999..*******************9998.6**************************9975 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   6.5     5e-19   1.3e-15       2      37 ..     285     320 ..     284     322 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5e-19
  zf-Sec23_Sec24   2 irCrrCraylNpfckidfggkrwiCnfCnhknevpp 37 
                      rCrrCr+y+Np++++++gg+rw+C++C+ +nevp+
      CDO68670.1 285 ARCRRCRTYINPYVQFIDGGNRWRCCMCSMSNEVPQ 320
                     6**********************************8 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   9.8e-13   2.5e-09       3      73 ..     825     895 ..     823     898 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 9.8e-13
                 EEEEEBSSSGGGEETTSEEEEEESSEEEEEEHTT..SHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHH CS
    Gelsolin   3 vlpkvvklsssslesgdcyLLdngftiflWiGke..ssqeeknfaadlaaeldseerfplpeliredqgkepa 73 
                 ++p++ +l+s+ le+ + +L+  g+tiflW+G++  +++  ++f+  + + l+   +++lp+l++ + +++ +
  CDO68670.1 825 IMPQPLPLTSERLERHGLFLIEDGQTIFLWVGRDavPQLIMDVFNLPSYEVLR-GGKTTLPVLDN-PFSQRVN 895
                 79***************************************************.999*******9.8887765 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4     2e-06    0.0052       9      34 ..     306     331 ..     302     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2e-06
  Vps36-NZF-N   9 tWvCpICsfsNevpsnfdpnastplP 34 
                  +W C  Cs+sNevp+ fd+ +  ++P
   CDO68670.1 306 RWRCCMCSMSNEVPQLFDWDQVRNQP 331
                  7*****************96666555 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3    0.0013       3.4       1      16 [.       8      23 ..       8      23 .. 0.93
   2 ?    7.3   1.3    0.0019       4.9      21      31 .]      48      58 ..      47      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
                X-TTEEEEE-TTTT-E CS
          WW  1 LPpGWeeqwdpdsGrv 16
                LPpGW + wd + +r+
  CDO68670.1  8 LPPGWAAEWDQNAQRY 23
                8***********9887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0019
                TTT--EESS-- CS
          WW 21 heTgetqWekP 31
                + Tg+tqWe+P
  CDO68670.1 48 TATGRTQWEPP 58
                579*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 6356.85
//
Query:       CDO68671.1  [L=462]
Description: hypothetical protein BN946_scf184790.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-20   72.7  44.3    2.4e-15   56.3  19.1    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3  19.1   1.3e-19   2.4e-15       1     252 [.      75     328 ..      75     336 .. 0.82
   2 !   21.6  22.0   4.9e-09   8.8e-05      34     178 ..     317     459 ..     313     462 .] 0.78

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.3e-19
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.sslwlllvlrvlqGl 97 
                 l++++fl++++ +++gp+lp  +++ +++  + ++l++++  +g++ ++    +l+drfG   v+++g l+ ++g  ++l  + +++++++ + ++ G+
  CDO68671.1  75 LCFSLFLAGWNDGTTGPLLP-RIQSVYHVGFALVSLIFVFNCVGFVSGAGANIWLTDRFGFGTVMVIGSLAQVIG--YALeAPaPPFPVFVMGYAINGF 170
                 6899****************.******************************************************..44433238899*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeee..kgtgp 193
                 g ++  ++++ ++a +  ke+ +  +g+l a ++lGa+  pl++  +a+   W+  +++  +++l+    l++++ + ++ +   + ++  +   g  +
  CDO68671.1 171 GLALQDAGANGFVASL--KENAATKMGILHAIYGLGALSSPLVATQFAEISRWSFHYLVSLGIALFNTAlLIAVFRFKSQDACLEEIGQMPShdDGNDG 267
                 ********99999986..458**********************************************77355555544444444444444445666667 PP

       MFS_1 194 aplvpawkallkdpvl.willialllfffgfsglltllplylqevlgls...glllaglllal 252
                 +   + +++++k +vl ++++++l++++ +  +l  ++ +y++  +g +   g++++g++ +l
  CDO68671.1 268 SDPNK-YRQMFKLRVLhLMAFFILIYVG-VEVTLGGWIVTYVRLLRGGGpssGYISSGFFGGL 328
                 77777.99******99435666666665.6666********9999999965555555544443 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 4.9e-09
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                  g + ++++ g  ++ + l ++ +++G rr ++l ++l+ al  l++++++sl    ++  + G+  g ++p+++  + ++ p+   +  ig+++++ +
  CDO68671.1 317 SGYISSGFFGGLTLGRVGLLWVNEKIGERRaIFLYAVLAIALE-LVIWLVPSLVGGGIAVSFVGVLLGPIYPIVMNHAGRVLPPWLLTGSIGWIAGFGQ 414
                 57889999999999999999**********5666666666666.66665588554444444789999******************************** PP

       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 +G+++ p l g+las +g  a+  +l  ++ ++++l  + l+ ++p+
  CDO68671.1 415 AGSAFLPFLTGALASRVGIKALQPLLVSMMGFMVIL--WALVPNNPR 459
                 ******************998844444444444333..555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3085.66
//
Query:       CDO68672.1  [L=349]
Description: hypothetical protein BN946_scf184790.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.078   13.5   0.1       0.18   12.3   0.1    1.5  1  RHS_repeat  RHS Repeat


Domain annotation for each model (and alignments):
>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     1e-05      0.18      21      35 ..     317     331 ..     308     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
  RHS_repeat  21 tYDaqGrlttlTdpd 35 
                 +YDa+Gr+ ++Td d
  CDO68672.1 317 RYDAAGRIIHTTDVD 331
                 8***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.59
# Mc/sec: 1780.47
//
Query:       CDO68673.1  [L=760]
Description: hypothetical protein BN946_scf184790.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-36  123.3   0.0    1.4e-35  122.8   0.0    1.2  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.8e-09   37.9   0.0    3.5e-09   37.0   0.0    1.5  1  RNase_H   RNase H
     0.0027   18.4   0.5     0.0071   17.0   0.5    1.7  1  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.0   2.4e-39   1.4e-35       3     221 ..      19     272 ..      17     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 2.4e-39
                 -TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS
       RVT_1   3 Kkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellr 90 
                 K+g      p+ yRpi+l  +  k+l++++a rL  ++    ll++n +g r+gr t dav   ++ +k +++k+   ++l+lD+ +aF sv++++ll+
  CDO68673.1  19 KPGkpsylvPKAYRPIALEDTSSKVLESVVARRLAGLAeqHGLLPTNHFGGRTGRTTTDAVlflTQRVKDAWRKGHVATVLFLDITSAFPSVNHARLLH 117
                 5556668999****************************88889*********************9999999**************************** PP

                 GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH......HHHH CS
       RVT_1  91 kltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee......lqel 183
                  l +  vp+ l+ +i++fls+r + v+++  +s+++  + glpqGs+lSP+l+ ++  +ll+ ++ + ++     ++DD++++++s++       l +l
  CDO68673.1 118 NLRKRHVPEDLVLWIRDFLSDRCTQVKFDDFTSEPLHASSGLPQGSPLSPILYLFYSADLLEVVDCKDPSQASGGFIDDTMLIVTSPSFeqniamLTAL 216
                 ****************************88889********************************988******************99999******** PP

                 HHHHHHHHHHTT--BEGGG-EEE.......................ESSEEETTEE CS
       RVT_1 184 leaveewlkesglkinpeKtklvlft.................v.kseevkyLGvt 221
                 +  +  w +++ +++  +K +++++t                     e+ +yLG++
  CDO68673.1 217 VPQLLGWSNSHACRFDVAKFQMLHCTrnekrysplplvigdhrIlPCESARYLGII 272
                 **************************************9998648*********97 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   5.9e-13   3.5e-09       4     142 ..     458     591 ..     455     592 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 5.9e-13
                 EEEEEEEEEECTTTCEEEEEEECTT...EEEEEEEC..CCCHHHHHHHHHHHHHHHTT.SCSEEE...EEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS
     RNase_H   4 vvvYtDGsclgnpgeggagavlykeg.arnisaple..eaqtnnraELsAvieaLkalksdekvn...iytDSkYvvkgitqwvhrwkknawkttseqk 96 
                   v+tDGs +   g  ga+a++++   ++ ++ +l   ++      EL  +i aL   +s+++v+   i  D k ++ ++ +      ++ ++ ++   
  CDO68673.1 458 FCVFTDGSGF--AGDIGAAAFAKGRAqEHVRRVNLGseDEHIVFEGELAGMILALDVIESEPRVTranILLDNKAAIRAVSK------RRPRPGQQLV- 547
                 679*****77..4555555555433234433333333245556689**********777885555555*****999997775......6677676666. PP

                 BHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  97 pvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 +++  +    lk+  +  ++++ wv+gH+Gv  gNe+aD+ Ak+a+
  CDO68673.1 548 ELFH-KRLRHLKAKRRSLAITVVWVPGHKGV-AGNERADMEAKDAS 591
                 6888.5556666888899*************.5**********985 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.5   1.2e-06    0.0071      36      80 ..     668     711 ..     650     714 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
      zf-RVT  36 lWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80 
                 +  l ++++  +  l++ ++ ss+ C+ C+   Et++H +l+C++
  CDO68673.1 668 ITQLRSGHVGLHAFLHRIKAVSSPMCPTCQC-PETVQHYLLTCRC 711
                 55566777888999*****************.6**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5132.52
//
Query:       CDO68674.1  [L=294]
Description: hypothetical protein BN946_scf184652.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-05   25.0   0.0    1.8e-05   24.5   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   9.9e-10   1.8e-05     193     241 ..       1      51 [.       1      52 [. 0.96

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 9.9e-10
       RVT_2 193 lkdlgkvskfLGieiaq..eaggiklsladyiakvvkkfeltdaktvatPl 241
                 + dlg+vs  LGi+i +  eag++ ls+++yi  ++  f++td k++ tP+
  CDO68674.1   1 MTDLGPVSWLLGIKISRdlEAGTFSLSQHAYIDALLARFNFTDLKPMSTPM 51 
                 89*************99789******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2116.72
//
Query:       CDO68675.1  [L=314]
Description: hypothetical protein BN946_scf184652.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2138.33
//
Query:       CDO68676.1  [L=262]
Description: hypothetical protein BN946_scf184652.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-40  138.8   0.3    1.3e-19   70.4   0.0    2.1  2  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.2   1.1e-22     2e-18       1      72 [.      14      84 ..      14      89 .. 0.95
   2 !   70.4   0.0   7.3e-24   1.3e-19      74     190 .]     107     217 ..     100     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.1e-22
                HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH CS
  Proteasome  1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyr 72
                v+ Gt+++++++kdgvv++ad+r+t+gs+++++ t +K+ +++d+i+++ +G+aaD++++++++ + +ql+ 
  CDO68676.1 14 VNLGTSIMAVQFKDGVVVGADSRTTTGSYIANRVT-DKLTHVHDRIYCCRSGSAADTQAIADIVHYYLQLHT 84
                689***************************88886.********************************9996 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 7.3e-24
                 HHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEES.TTHHHHHHHHHHHHSTTBSHHHHHHHHHHHH CS
  Proteasome  74 rygrpipverlvarvaaklqaytqrsgrrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiG.sgseaaktalekeykedltleeavelavkal 171
                 + g+ ++v+     +aa++ + ++++++  + +++++ag+d+e gp++y+i   G ++++    aiG sgs+++++++++ yke   ++e+ve+++++l
  CDO68676.1 107 TSGEAPSVH-----TAATMFQKMCYDNKDALSAGIIVAGWDKEVGPSVYNIPLGGGLFRQP--WAIGgSGSTYVYGYCDATYKEGWGRDETVEFVKNTL 198
                 667888888.....999999999************************************94..77777******************************* PP

                 HHHHHHBTTSCSSEEEEEE CS
  Proteasome 172 kealerdklsgknievavi 190
                   a+ rd +sg+ i+++vi
  CDO68676.1 199 ALAMSRDGSSGGVIRMCVI 217
                 ****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1913.68
//
Query:       CDO68677.1  [L=263]
Description: hypothetical protein BN946_scf184652.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-29  102.6   0.1    2.8e-29  102.0   0.1    1.3  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
    6.8e-05   22.4   0.0    9.3e-05   22.0   0.0    1.1  1  SAC3_GANP        SAC3/GANP family
  ------ inclusion threshold ------
       0.12   12.3   0.0        0.2   11.6   0.0    1.3  1  AvrPphF-ORF-2    AvrPphF-ORF-2


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.1   4.6e-33   2.8e-29       4     142 ..     101     241 ..      98     243 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 4.6e-33
  CSN8_PSD8_EIF3K   4 aelytniLlkaLtqndladfrlllkrlp..aaiqqsdeeiqklltLetlLeeanyakfwstlksddlsadltadvagleelvReeiaklvgkaY 95 
                      + l +++L+ +Ltqn++adf++ l+ lp  a+ ++ +++i + ++Le+ L+e++y k+w+ ++++ + ++++ +v++l  ++R+eia++ + aY
       CDO68677.1 101 YPLRGLNLIRLLTQNRIADFHTTLESLPlrADALTGNPYIAHPINLEQWLMEGSYSKVWN-AREEAPAEEYKFFVDSLMGTIRNEIASCEEAAY 193
                      567899*********************9555778889***********************.88889**************************** PP

  CSN8_PSD8_EIF3K  96 esIsadvlaelLglssdeelekfvkevgWeldaatvivpfnpe.eakp 142
                       s+  +++a lL +++++e+  f+ e+gW++d +   + f+++ e k 
       CDO68677.1 194 DSLPLKDAATLLFFKNQSEVLAFARERGWQVDLTAAKITFAKKtEEKV 241
                      ********************************9999999999877665 PP

>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.6e-08   9.3e-05     146     291 ..      76     224 ..      69     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTTT-...HHHHHHHCTS...-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHTTS-HHHH.HHH CS
   SAC3_GANP 146 LqkclqsLlelYddlrkkkeelpneaefrayylLlnlrd...pdilrevqel...pseilkspevqlalklvaalqennyvrffklvkevsylqa.cll 237
                 +++ +++L  +Y+d ++   ++p+e  +r+++l+  l +   +d+ +++++l    + +  +p +   ++l + l+e+ y+++++  +e++  +   ++
  CDO68677.1  76 FDRYFSQLQTFYNDFSSVLPPSPREYPLRGLNLIRLLTQnriADFHTTLESLplrADALTGNPYIAHPINLEQWLMEGSYSKVWNAREEAPAEEYkFFV 174
                 5678899*********777*************98877554456778888888444578999***************************99988752678 PP

                 GGGHHHHHHHHHHHHHHHS-TT---EEHHHHHHHTT-SSHHHHHHHHHHTT--E CS
   SAC3_GANP 238 erhfnevRrkalkalsraykskskkvpleeLaelLlfddeeeaeefceayglev 291
                  + + ++R+++ ++   ay     ++pl++ a+lL+f++++e+ +f ++ g +v
  CDO68677.1 175 DSLMGTIRNEIASCEEAAY----DSLPLKDAATLLFFKNQSEVLAFARERGWQV 224
                 88999********999999....79***********************999887 PP

>> AvrPphF-ORF-2  AvrPphF-ORF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05       0.2      15      90 ..      94     170 ..      89     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                    S-HHHHHHHHHHH-HHHHTT--TT-EEEEEE-HHHHTTSEEE-BS----EEEEEEEEEE-TTTTTTT--TT.SGGGE CS
  AvrPphF-ORF-2  15 lsasqreqfleahdPlrvlglnddtelyrttesryikegklaGnPksgasvrlheelqesslasrlgalPa.earay 90 
                    l++s re  l   + +r l  n  + ++ t+es  ++ + l+GnP     ++l + l e s+++  +a+ +  a++y
     CDO68677.1  94 LPPSPREYPLRGLNLIRLLTQNRIADFHTTLESLPLRADALTGNPYIAHPINLEQWLMEGSYSKVWNAREEaPAEEY 170
                    7788888889999999**********************************************998777643134445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2065.64
//
Query:       CDO68678.1  [L=230]
Description: hypothetical protein BN946_scf184652.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-35  122.2   0.1    2.5e-20   72.8   0.0    2.1  2  Proteasome      Proteasome subunit
    1.9e-13   49.8   0.1      3e-13   49.2   0.1    1.3  1  Proteasome_A_N  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
       0.11   12.5   0.0        1.5    8.8   0.0    2.3  2  PfaD_N          Fatty acid synthase subunit PfaD N-terminal d


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   4.1e-24   2.5e-20       1      88 [.      31     116 ..      31     119 .. 0.96
   2 !   47.8   0.0   1.9e-16   1.2e-12     109     189 ..     120     198 ..     115     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 4.1e-24
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHH CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarv 88 
                 v++ +t+vGi+ k+gvvla++k +   skll +++ ++i+ +d+hig+a aG  aD+r l++rar ea+++r +y  p++++++v r+
  CDO68678.1  31 VENSGTAVGIRVKGGVVLAVEKLIH--SKLLIPENNKRIYTVDKHIGAASAGFLADGRHLANRARDEASSFRENYRAPPTLQYVVDRI 116
                 57889********************..*******************************************************888775 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 1.9e-16
                 EEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 109 liagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 +++ vd++g p L+ ++psG  ++++  +a+G+g++ akt lek+ +++l+++eav  a ++++ ++++ k +  ++e+ +
  CDO68678.1 120 ILGAVDKNG-PALFVVEPSGVAYGYR-GAAVGKGRQLAKTELEKLKFDELSMKEAVMEAARIIYLVHDDNKEKDFELEMSW 198
                 456677665.***************5.*****************************************9988888888877 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.1     5e-17     3e-13       1      23 []       8      30 ..       8      30 .. 0.99

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 5e-17
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+s +t+SPdGR+fQVEYA+kA
      CDO68678.1  8 YDLSASTYSPDGRIFQVEYANKA 30
                    **********************9 PP

>> PfaD_N  Fatty acid synthase subunit PfaD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.075   4.5e+02      31      47 ..      70      86 ..      62      96 .. 0.81
   2 ?    8.8   0.0   0.00025       1.5       4      33 ..     158     187 ..     156     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.075
                TTTCEEEES--B----- CS
      PfaD_N 31 seggiGvtnegylvped 47
                ++++iG+++ g l+ + 
  CDO68678.1 70 VDKHIGAASAGFLADGR 86
                6899*******988766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00025
                 -TTS-B--HHHHHHHHT-TTS-EEEEETTT CS
      PfaD_N   4 sldsisfdeegIkqkLldldkpcYiVrseg 33 
                 +l++++fde  +k++ ++  + +Y+V +++
  CDO68678.1 158 ELEKLKFDELSMKEAVMEAARIIYLVHDDN 187
                 7899**********************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1859.86
//
Query:       CDO68679.1  [L=885]
Description: hypothetical protein BN946_scf184652.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-18   66.3   1.5    2.1e-11   42.4   0.0    3.2  3  Nup88        Nuclear pore component
  ------ inclusion threshold ------
       0.16   12.3   0.0         15    6.0   0.0    2.9  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
       0.88    9.7  13.3      0.091   12.9   6.6    2.4  2  Nup54        Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.5e-15   2.1e-11      66     185 ..      92     208 ..      49     250 .. 0.77
   2 !   12.8   0.0   3.2e-06     0.019     323     478 ..     413     582 ..     400     598 .. 0.75
   3 ?    0.6   8.1     0.016        93     550     641 ..     688     780 ..     675     831 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 3.5e-15
       Nup88  66 kkvkyQtLlcsnpplfevdrvlvsetgslvaLvGskGvvvlelPrRwGkksefeggkkkitCrtisvaerlFtsneslelrqvrWyPssvsdshLvlLt 164
                 ++ k  ++l +  + fe++++ ++++g+l+a+ G   v v+ lPr  G +       +++ C++i++ + + + ++s  + +++W+P  +  s+L+++t
  CDO68679.1  92 SSRKSYKILHTPNIQFEIHQIALNPNGKLLAVAGAFQVAVIVLPR-TGFNKL---VTTTVDCKSIQIGQYYHAADTSAPIAKIDWHPWGQGGSTLLVMT 186
                 44555677788899******************************5.666554...5679**************************************** PP

       Nup88 165 sdNtlrlYdlk.epqnpaklls 185
                  d  lr Yd++ + ++p+++ls
  CDO68679.1 187 IDGKLREYDMAlDAEEPQQTLS 208
                 ********96513444444433 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.2e-06
       Nup88 323 seswsevddlvliepsevslyvlEtveLELgLklase.eeeeal........scpikLkrDpinesRYfcthnaGvHsvtl.pwinklqkflesdeedk 411
                 + +w++++  +++ p    l  +E+++L +  +l+++ ++e+ l        + p+ L  Dpi ++  + +h  GvH++ l p+++ l   l+  ++d 
  CDO68679.1 413 EARWESRAHPTNELP---MLATYESIDLGIVSTLQAAgKSEKGLslvelvqgNHPVFL-NDPIHNDTIYVYHAFGVHVLQLePLLKSLAVALREANDDS 507
                 456777777775555...7889999999987666666344444478999999999988.5999999999************558888988888755554 PP

       Nup88 412 ds....l.qelaaeskciveyilCtkplsssevapvlGialls...lpatlvlllsdgevislklvidivpasep 478
                  s    l  +l++  ++ v+ il t   + ++++pv+G+a+ +   l  ++ +l+s++++   +l     ++  p
  CDO68679.1 508 GSgagsLgATLERVAQTDVQPILLTFSVEQQSSSPVIGVAVPNdvyLTYSIFILTSTMRMSVFPLTLRSESPYTP 582
                 4322212235777778889**********************9888888899999999999888887766444443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.016
       Nup88 550 elvreeiekrvkllkkqkeqqleelqsleeerkslseraeklAekyeeikdkQeklvrrvkkvlkrln.sklpvlseaeremkkelekikekl 641
                 +l++  +e r  l +k+ ++q e  +++ ++ + +s + +   e+   +++ Q +l+ r+++ l+ l  ++ p lse e +  +el+++ke++
  CDO68679.1 688 QLAHRSLEVRASLQEKEFKRQREKCAEMLDTARGMSSKGKVQLERIARVQETQRALLARLDRTLQGLMaKASPELSENETKWFEELRRMKEEV 780
                 566666666777667777777888877777777888888888899999****************98761568*****************9976 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0025        15      32      57 ..      99     125 ..      72     133 .. 0.83
   2 ?    2.6   0.0     0.029   1.7e+02      33      67 ..     159     196 ..     126     204 .. 0.70
   3 ?   -2.2   0.0      0.87   5.2e+03      53      79 ..     394     421 ..     392     430 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0025
  ANAPC4_WD40  32 l.eedkedsevrsLaWkpdgklLavay 57 
                  + ++++ + e++++a +p+gklLava 
   CDO68679.1  99 IlHTPNIQFEIHQIALNPNGKLLAVAG 125
                  4455788999***************95 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.029
  ANAPC4_WD40  33 eedkedsevrsLaWkp...dgklLavaysdgevrllda 67 
                  ++++++  + ++ W+p    g+ L v + dg++r +d+
   CDO68679.1 159 HAADTSAPIAKIDWHPwgqGGSTLLVMTIDGKLREYDM 196
                  45667778888888872224579********9998775 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.87
  ANAPC4_WD40  53 Lavaysdgevrll.daesgkvvhslsvk 79 
                    v+++dg+v l+ d+e+ +   +++++
   CDO68679.1 394 VLVSFQDGKVDLYlDVEKVEARWESRAH 421
                  568999****995488877766666555 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   6.6   1.5e-05     0.091      33     124 ..     693     781 ..     690     800 .. 0.82
   2 ?   -0.8   0.7      0.25   1.5e+03      71     124 ..     812     868 ..     795     882 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS CS
       Nup54  33 dLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqln 124
                  L+ R+ +Q+ke +++re++ e+ d ++ +++ +    ++r+++++ ++ +l  Rl r l+   ++++ +  l+++E +  ++l+ +++++ 
  CDO68679.1 693 SLEVRASLQEKEFKRQREKCAEMLDTARGMSS-KGKVQLERIARVQETQRALLARLDRTLQG--LMAKASPELSENETKWFEELRRMKEEVV 781
                 6899***************************5.55555689999999999998887765552..4478888999999999999999998875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-...SS---SSHHHHHHHHHHHHHHHS CS
       Nup54  71 svrlekakkrhvelshRllrllrkleilrsr...gyaldaeEeelrarletleaqln 124
                 + + e+a+++++  s+  l l ++ e+ +++   +  ++  E el +  + l+ +l+
  CDO68679.1 812 LREKEEARQKNMIQSREALGLSQAFELGKRSteeRTRISLMEAELLRMANILDISLD 868
                 445577788888888888888777776633322233455555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6337.12
//
Query:       CDO68680.1  [L=184]
Description: hypothetical protein BN946_scf184652.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-06   26.5   0.1    1.3e-05   25.5   0.0    1.6  2  4HBT            Thioesterase superfamily
  ------ inclusion threshold ------
      0.017   14.4   0.1      0.033   13.5   0.0    1.5  2  Adenine_deam_C  Adenine deaminase C-terminal domain


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.98   8.7e+03      59      72 ..      48      61 ..      39      65 .. 0.58
   2 !   25.5   0.0   1.4e-09   1.3e-05       1      75 [.      86     163 ..      86     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.98
                EESSEEEEEEEEEE CS
        4HBT 59 lgrtsavvevevrd 72
                +g++ +  eve+++
  CDO68680.1 48 TGSSLVLKEVELFR 61
                45555555666665 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.4e-09
                 TSSB-HHHHHHHHHHHHHHHHHHTTST...TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTS CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggr...gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedg 75 
                 gG++hgG+ + l+D++ ++al+ lg +      +v  +++ +f++p+  g ++++  + l  g+++++   e++d ++
  CDO68680.1  86 GGNMHGGCAVYLIDVCSSMALAVLGMAtdkPWNFVSQAITTTFHAPAPAGVKIEIINTTLSFGSRTVSAITEIWDVTN 163
                 69**************************99999***********************************9999999776 PP

>> Adenine_deam_C  Adenine deaminase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.66   5.9e+03      50      61 ..      38      49 ..      34      50 .. 0.77
   2 ?   13.5   0.0   3.7e-06     0.033      86     152 ..      88     153 ..      80     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.66
                    --BSSEEEES-- CS
  Adenine_deam_C 50 glkkgAiAssva 61
                     + +gA+A s +
      CDO68680.1 38 VMSRGAFARSTG 49
                    678999999975 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.7e-06
                     HTTSEEEEEETTEEEEEEE-TBTTTBBSS-HHHHHHHHHHHHHHHHTTS-TTTBSGGGGGSTT-TTS CS
  Adenine_deam_C  86 elgGGivvvedgkvlaelpLpiaGlmSdepaeevaekleeleaalkelgvkledpfmtlsflalpvi 152
                     +++GG++v+    v ++++L + G+ +d+p + v++++++  +a    gvk+e +  tlsf + +v 
      CDO68680.1  88 NMHGGCAVYL-IDVCSSMALAVLGMATDKPWNFVSQAITTTFHAPAPAGVKIEIINTTLSFGSRTVS 153
                     6889999995.579*************************99988888*************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1316.73
//
Query:       CDO68681.1  [L=974]
Description: hypothetical protein BN946_scf184652.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-77  260.1  25.3    3.1e-77  259.6  25.3    1.3  1  RSN1_7TM        Calcium-dependent channel, 7TM region, putati
    1.8e-37  129.2   0.0    2.7e-37  128.7   0.0    1.3  1  PHM7_cyt        Cytosolic domain of 10TM putative phosphate t
      3e-21   75.8   0.0    1.8e-20   73.3   0.0    2.4  1  RSN1_TM         Late exocytosis, associated with Golgi transp
  ------ inclusion threshold ------
      0.068   13.2   0.0      0.068   13.2   0.0    2.5  3  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6  25.3   6.9e-81   3.1e-77       2     274 .]     393     666 ..     392     666 .. 0.98

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 6.9e-81
    RSN1_7TM   2 klivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaFl 100
                  ++++ ++v+l +fw ip+++++ l ++++++k++p+l++++e+++ l ++v++ lP++++++l+a lp+il+ l+ +q+ + rs +e+s+++kyf+Fl
  CDO68681.1 393 DYLAMGAMVVLQFFWFIPITALAGLLSFSEIKKTWPWLAEMIESNERLAAIVQNSLPSVAMITLNATLPFILEALTLIQALPARSWIEYSIMKKYFLFL 491
                 678899********************************************************************************************* PP

    RSN1_7TM 101 vvnvFlvftlagtalslleeiidnptsipkllaeslp..kasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygte 197
                 ++nv ++f +a+t ++l+++++++p + +++la +l   ka  Ff++y++lqgl++++l+Ll+l+ +i  l+ r+f+ +tprd+ae++ +pp+++yg++
  CDO68681.1 492 LINVVFIFLVASTYWQLVRDLASSPAKGIEKLADALAagKARHFFVSYVILQGLGLMPLQLLNLGVIIPRLVYRLFITRTPRDFAELN-APPMINYGIV 589
                 ************************************5559**********************************************77.********** PP

    RSN1_7TM 198 ypkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqllliglf 274
                 yp+ +lifvi+l Ysvi+Plil+f+++yf+++y+vyky+ll+v+ ++yes+G++wp+++ rl++g+++f +++iglf
  CDO68681.1 590 YPQAILIFVITLLYSVIQPLILVFGAVYFGVAYVVYKYKLLFVFYKPYESQGQAWPITFVRLIWGVLMFIVFMIGLF 666
                 ***************************************************************************98 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.0     6e-41   2.7e-37       1     176 []     196     381 ..     196     381 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 6e-41
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkr....................... 76 
                 +rTv++t++P++lrse +l+e+fe++     vesv+++r+v+ l++l + r++a+ kle a+  y+ n+++  ++r                       
  CDO68681.1 196 ARTVMITHLPPHLRSEPALAEYFEQMDLP--VESVNVCREVGSLRRLLDLRTEALFKLESAWVDYLGNPSQV-APRtvanhplvdtdtasiesqpeqlv 291
                 69***********************9655..79************************************876.56679********************* PP

    PHM7_cyt  77 ......pthklgflglkligkkvdaidyyrekleeldeeieeerekvkkkplgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelAPeP 169
                       pt ++g++      +kvdai+yy++k +e de +++ r++ + k++++aFvtfe+ +sa+ +a         q+ + p  +p ++ ++lAPeP
  CDO68681.1 292 lpnrkrPTLRPGWF-----RRKVDAIEYYEQKFREADELVKKRRRSGRFKATHVAFVTFEKMSSAQVAA---------QAVHAP--HPAECLTRLAPEP 374
                 *9777777777765.....49***************************************999998774.........556666..6899********* PP

    PHM7_cyt 170 rDviWeN 176
                 rD++W+N
  CDO68681.1 375 RDIVWSN 381
                 ******9 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   3.9e-24   1.8e-20      44     155 ..      41     174 ..      34     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 3.9e-24
     RSN1_TM  44 tpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavlalivLlPvnatggegedskesk............sgldklsisnvse 130
                 +++++++ +fgWi +++++s+ ++l+ +GLDa+v+l+flkm++ +f+ ++vlal++L+P+n +++ + ++ +++                   +sn + 
  CDO68681.1  41 HEAHAHQAFFGWILPTIRTSEFTVLQIVGLDAAVLLSFLKMAFWLFSSCSVLALAILMPINLKNNIDIGDGREDagddwfgalsadP------PSNTPP 133
                 45667799*****************************************************88776666555556665564333330......444443 PP

     RSN1_TM 131 gsn................rlwahvvvayiftglvlyllyr 155
                 +++                +l +h++++y+ft+l+l  +++
  CDO68681.1 134 KESppsgdnwfdlisdansYLSVHLLFTYVFTVLALRAITK 174
                 3335666666666666666***************9988876 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       1.9   8.7e+03      21      45 ..     402     424 ..     395     436 .. 0.67
   2 ?   -3.3   1.1       1.7   7.7e+03      12      45 ..     594     626 ..     584     639 .. 0.48
   3 ?   13.2   0.0   1.5e-05     0.068       6      55 ..     652     702 ..     647     752 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
  Halogen_Hydrol  21 llgfsfflalliailggilvyvasr 45 
                     +l+f +f+   i +l+g+l+++ ++
      CDO68681.1 402 VLQFFWFIP--ITALAGLLSFSEIK 424
                     344444444..67888888888777 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
  Halogen_Hydrol  12 vivalvsffllgfsffla..lliailggilvyvasr 45 
                     +++++++++   +s++    l+++++ + ++yv ++
      CDO68681.1 594 ILIFVITLL---YSVIQPliLVFGAVYFGVAYVVYK 626
                     222222222...222222113344555555555544 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.5e-05
  Halogen_Hydrol   6 lsiliavivalvsffllgfsfflallia.ilggilvyvasrknkkkkhlkk 55 
                     + +++++iv+++ +f+l+ sf+la+l+a +lgg l+++ + +++ + h k 
      CDO68681.1 652 IWGVLMFIVFMIGLFILKKSFILATLLApLLGGTLLWWYYTDKQFRPHSKF 702
                     56778889999*************9999*************8888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6569.14
//
Query:       CDO68682.1  [L=682]
Description: hypothetical protein BN946_scf184652.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-34  116.1   0.2    2.6e-33  114.3   0.3    1.7  2  Nsp1_C          Nsp1-like C-terminal region
    2.1e-19   70.2 115.8    1.4e-08   35.5  28.0    7.3  5  Nucleoporin_FG  Nucleoporin FG repeat region
     0.0011   19.1   4.5       0.12   12.5   2.2    2.3  2  CENP-Q          CENP-Q, a CENPA-CAD centromere complex subuni
  ------ inclusion threshold ------
       0.94   10.1   3.0         21    5.8   3.0    2.7  1  Syntaxin-6_N    Syntaxin 6, N-terminal
        3.6    8.1   4.3         91    3.6   0.0    3.1  2  NPV_P10         Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.3   7.2e-37   2.6e-33       4     108 ..     457     560 ..     452     567 .. 0.90
   2 ?   -1.7   0.0      0.68   2.4e+03      79     104 ..     639     664 ..     630     674 .. 0.82

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 7.2e-37
      Nsp1_C   4 ktve.iapsaaslknktldelinkWtteLeeqekeFeeqakkvneWDrvLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkel 101
                 +t   ++ps   l+ kt++e++n+W+++Le+  +eF++ a++v+ WDr+L+eng+++++Ly  vl+ae+eqn idq+L+ ie+qq++L s Ld yEk++
  CDO68682.1 457 STIAvPPPS--MLRGKTIEEIVNRWSNDLETHVREFNKFASEVAVWDRALIENGNNLARLYATVLAAEREQNDIDQSLDHIEQQQQDLASTLDAYEKST 553
                 333313333..3*************************************************************************************** PP

      Nsp1_C 102 eellskl 108
                 ee+l+ +
  CDO68682.1 554 EEILGGQ 560
                 **99765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.68
      Nsp1_C  79 eLeyiesqqdeLeslLdnyEkeleel 104
                 +L+ i    +eL++ +++ E+++ + 
  CDO68682.1 639 SLQWIDGAVRELDTKITDVERRVRAS 664
                 78999999999999999999988765 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  34.5   6.3e-11   2.3e-07       2      91 .]       3      87 ..       2      87 .. 0.90
   2 !   35.5  28.0   3.8e-12   1.4e-08      24      91 .]      50     128 ..      46     128 .. 0.93
   3 !   10.4  24.7   0.00025       0.9       4      81 ..     118     180 ..     115     185 .. 0.70
   4 !   32.2  37.4   4.1e-11   1.5e-07       4      91 .]     183     281 ..     180     281 .. 0.86
   5 ?  -31.9  60.9         5   1.8e+04       2      87 ..     279     340 ..     267     460 .. 0.62

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6.3e-11
  Nucleoporin_FG  2 lFGaaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91
                     FG++++ ++++  G+t t   ++g+lFG+ st+ a asggglfg+  ++  +gglFG++n++++++++gglFG++a+++ +++sgglFG
      CDO68682.1  3 FFGQNPQGSNTQNAGATGTG--TGGNLFGQPSTTGAGASGGGLFGG--SAFGGGGLFGASNTSNTPASGGGLFGQPASNT-SAPSGGLFG 87
                    79977778888888888888..9**********************9..7899**************99******998887.799*****9 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 3.8e-12
  Nucleoporin_FG  24 stgglFGasstatatasggglfgat..sqtaasgglFGstnattqttatgglFGstaataqq.........ttsgglFG 91 
                      +gglFGas+t++++asggglfg++  +++a+sgglFGs+++tt+++ +gglFG+++a+a++         +tsgglFG
      CDO68682.1  50 GGGGLFGASNTSNTPASGGGLFGQPasNTSAPSGGLFGSATNTTTPAPSGGLFGNANANASSntapaagstNTSGGLFG 128
                     5799***999999999999******999999**************999******99999988999*****999999**9 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00025
  Nucleoporin_FG   4 GaaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaata 81 
                     G  +t+tsgglFG+  +t   +g++FG s++a++ta++++  g+   t ++gglFG+++a      +g+lFG++ at 
      CDO68682.1 118 G--STNTSGGLFGGGGAT---GGSIFG-SNPASNTANASSTPGN---TGTTGGLFGANTA------GGNLFGAKPATP 180
                     4..7999***********...9*****.4555555444444454...6777888887763......677888776654 PP

  == domain 4  score: 32.2 bits;  conditional E-value: 4.1e-11
  Nucleoporin_FG   4 GaaatstsgglFGststtatstgglFG.asstatatasgg.glfgatsqtaasgglFGstnattqtta......tgglFGstaataqq......t 84 
                     G+++++t+g+lFG+ st+ t++g+lFG a+++++++++gg +lfg+   ++++gglFG+++a ++++a      +gglFG++++++++      +
      CDO68682.1 183 GSTPAPTGGSLFGGGSTSGTTGGSLFGnATNNTNTSTTGGsSLFGG---ASSGGGLFGAKPADQSANAsstpaaGGGLFGQASSNTASnttapsA 274
                     6788999********************744445555555569***9...899********99999988999999******999988878999999 PP

  Nucleoporin_FG  85 tsgglFG 91 
                     +sgglFG
      CDO68682.1 275 PSGGLFG 281
                     9999**9 PP

  == domain 5  score: -31.9 bits;  conditional E-value: 5
  Nucleoporin_FG   2 lFG............aaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaataqq 83 
                     lFG            aaa++t++g+ Gs                                     +g  Gst+a++++   +gglFG+++ t ++
      CDO68682.1 279 LFGlppkptdpqgttAAANTTGTGTAGS-------------------------------------TGTAGSTPAASSGGLfGGGLFGNKTGTPTT 336
                     3333222222222222333333333333.....................................333333333333333444444444433333 PP

  Nucleoporin_FG  84 ttsg 87 
                     t++ 
      CDO68682.1 337 TPAA 340
                     2222 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   2.2   3.4e-05      0.12      41     163 ..     483     610 ..     470     613 .. 0.75
   2 !    6.8   0.0     0.002       7.3     125     162 ..     619     656 ..     609     661 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
      CENP-Q  41 LspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassdevlgea.........sgtvfsdlepelde 130
                 L++  +  ++  +e+    ral +  ++L++L +++ a++re+++  +++ ++ q++++ + +l+  +++    e+         +  ++   + ++ +
  CDO68682.1 483 LETHVREFNKFASEVAVWDRALIENGNNLARLYATVLAAEREQNDIDQSLDHIEQQQQDLASTLDAYEKS---TEEilggqgsnlRALDTGPAD-TERD 577
                 66666667777788888899999999*******************7777777777777777776666665...222356666665333333333.3456 PP

      CENP-Q 131 ellpllqqLgshLesmrgnlaqlegllpalers 163
                 +  +l+++L++hL+ ++g l q+ + + al  s
  CDO68682.1 578 KNYMLATELHGHLDDLSGSLMQMIDAVNALSLS 610
                 6678899******************99999766 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
      CENP-Q 125 epeldeellpllqqLgshLesmrgnlaqlegllpaler 162
                 ++  d+ +++++q L+shLes++     +++l+++++ 
  CDO68682.1 619 QDGGDDAISQIAQILSSHLESLQWIDGAVRELDTKITD 656
                 55679*****************9888888888888876 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.0    0.0057        21      34      72 ..     510     554 ..     470     676 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0057
  Syntaxin-6_N  34 s......tseeldetrteLrkalrsiewdledLeetvriveknps 72 
                   +      t    ++ ++++ ++l+ ie++ +dL  t ++ ek+ +
    CDO68682.1 510 NlarlyaTVLAAEREQNDIDQSLDHIEQQQQDLASTLDAYEKSTE 554
                   144566666777888999999999999999999999999998755 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7     0.064   2.3e+02      16      56 ..     528     569 ..     514     639 .. 0.60
   2 ?    3.6   0.0     0.025        91       6      28 ..     640     662 ..     632     666 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.064
     NPV_P10  16 vddkVdalqqqvddvqenlpdvteln.ekLdaqsaqLaelet 56 
                 +d+ +d ++qq +d+++ l   ++ + e L +q  +L +l+t
  CDO68682.1 528 IDQSLDHIEQQQQDLASTLDAYEKSTeEILGGQGSNLRALDT 569
                 566666666666666666665554330335566666666655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.025
     NPV_P10   6 LlvIradikavddkVdalqqqvd 28 
                 L  I  +++++d+k++ ++ +v 
  CDO68682.1 640 LQWIDGAVRELDTKITDVERRVR 662
                 56678899999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 4606.04
//
Query:       CDO68683.1  [L=530]
Description: hypothetical protein BN946_scf184652.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-42  145.4  41.0      2e-42  145.4  41.0    1.7  2  MFS_1       Major Facilitator Superfamily
    4.5e-08   32.4   9.8    4.5e-08   32.4   9.8    3.3  2  Sugar_tr    Sugar (and other) transporter
     0.0055   15.2   2.6       0.01   14.3   2.6    1.4  1  MFS_3       Transmembrane secretion effector
  ------ inclusion threshold ------
      0.012   14.2   0.0      0.025   13.2   0.0    1.5  1  FPN1        Ferroportin1 (FPN1)
      0.036   13.8   0.8        0.1   12.4   0.8    1.7  1  Sensor_TM1  Sensor N-terminal transmembrane domain
       0.28   10.9   3.4       0.96    9.1   0.7    2.9  3  DUF21       Cyclin M transmembrane N-terminal domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4  41.0   6.6e-46     2e-42       2     353 .]      97     481 ..      96     481 .. 0.83
   2 ?   -1.8   1.9      0.39   1.2e+03     138     174 ..     481     520 ..     476     527 .. 0.65

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 6.6e-46
       MFS_1   2 llaaflsalarsilgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +l +f++ l++s+ +palp  +a+++g  s +e+   l+++ +++a++ l+l++ls+ +Gr +vl lg l+f+++ + ++++++++ l+ +r+l+G+ +
  CDO68683.1  97 SLYTFVTPLGSSMMAPALP-DIAKHYGiTSQTEVAATLSVFLVTFAIGPLFLAPLSEIYGRTWVLHLGNLFFLAFNFGCAYSPTVTDLIGFRILSGFVG 194
                 5779***************.9******666777******************************************777777655557************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +a ++ g+  i+d+f+++er++a++++s+g  lG+++gp++gg++a+ +g+ ++f+++a+++++a+v+++ +l+e++++  r + +++           
  CDO68683.1 195 SAPIACGGGTISDLFSEKERASAMAIYSLGPLLGPVIGPVAGGFIAETIGFKYIFVVVAGLAFIAAVVGIPFLRETYHPVIRLRRARKVadpekaakah 293
                 ***********************************************************************************9999987777765555 PP

       MFS_1 189 ....kgtgpaplvp.......awkallkdpvlw.......illialllfffgfsglltllplylqevlgls....glllaglllallalvgail.alla 264
                     +        +       +w  + ++  l+       +l + ++l+  +++++++ +p  +   +g+s    gl        ++  vg+++  l++
  CDO68683.1 294 phliA--------EhgskvhrLWVDMTRPFILLtrsiicfLLSAYMALMYGIYYLMFAVFPDVFTGIYGFSigvgGL------AYIGLGVGFFSaTLFG 378
                 55440........244444455555555555535534222333333333445555888888889*******544444......4444444444437788 PP

       MFS_1 265 grlsdr............lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagsl 347
                 ++++d              ++++r+   +++ +++ +g+++ +++  a +++++ ++    +Gfg+ ++f +++ +++d +   +a++a++++++++s 
  CDO68683.1 379 AYFADQvyahlvaknggkGKPEFRIPALIFGSIFVPIGVFWYGWSAQARIHWIMPIIgtgiFGFGMMTTFLPIQLYLVDTF--TYAASALAAASVFRSM 475
                 888899888888777776666********************************9999977777777777************..9**************8 PP

       MFS_1 348 ggalgp 353
                  g+ +p
  CDO68683.1 476 LGFAFP 481
                 888766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.39
       MFS_1 138 pllggllasslgWravfyilaivsllafv...lfllllpe 174
                 pl+g+ ++++lg  +   +la++++++++   +fl+++ e
  CDO68683.1 481 PLFGSQMYAALGLGGGNSLLAGLAIVLGIpfpIFLWFYGE 520
                 7777777777776666666666666666655577777755 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   9.8   1.5e-11   4.5e-08      43     312 ..     122     383 ..      58     385 .. 0.77
   2 ?   -2.4   9.1      0.54   1.6e+03      75     118 ..     402     446 ..     367     520 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.5e-11
                 H.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHH CS
    Sugar_tr  43 e..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgal 139
                    s++ + +++s+flv  +iG lf+ +l++++GR ++l  ++++f++ ++ +a ++   +v  li  R+l+G+   +  ++   +is +  +k R   
  CDO68683.1 122 GitSQTEVAATLSVFLVTFAIGPLFLAPLSEIYGRTWVLHLGNLFFLAFNFGCAYSP---TVTDLIGFRILSGFVGSAPIACGGGTISDLFSEKERASA 217
                 1447778899***********************************************...9*************88888888899************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH.HHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH. CS
    Sugar_tr 140 vslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll.lilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqee 237
                 + +y l+  +G +++ + g ++++t +   +++ + + + +a +  ++++ fl+E+   +  + +  +a++v    ++ ++a++ l +e  s  +    
  CDO68683.1 218 MAIYSLGPLLGPVIGPVAGGFIAETIG---FKYIFVVVAGLAFIAaVVGIPFLRET---YHPVIRLRRARKVADP-EKAAKAHPHLIAEHGSKVHR--- 306
                 ********************9988888...888888888777554056679*****...6667777899999988.66666666665555555554... PP

                 ....HTTHHHHSH.......HHHHHHHHHH.HHHHTTHHHHHH..HTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 238 ekaswkellsskt....vrqrlligvvlqi.fqqltGinaimy..ysptifenlglsks..llvtiivgvvnfvatfvaiflvd 312
                        l+  +t     + r +i+++l + +  + Gi ++m+  ++ +++   g+s     l+ i++gv  f at++++++ d
  CDO68683.1 307 -------LWVDMTrpfiLLTRSIICFLLSAyMALMYGIYYLMFavFPDVFTGIYGFSIGvgGLAYIGLGVGFFSATLFGAYFAD 383
                 .......44443333334555556655554144445676666444677777777777776667778888888888888888777 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHHHHHHH-TTTT.SS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  75 Rkkslliaavlfvigavlqaaakgk.nsvevlivgRvlvGigvGl 118
                 R ++l+++++++ ig +  +++ ++  ++ + i+g  + G+g+ +
  CDO68683.1 402 RIPALIFGSIFVPIGVFWYGWSAQArIHWIMPIIGTGIFGFGMMT 446
                 7789******************9887899999********99744 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.6   3.4e-06      0.01      16     187 ..      90     265 ..      80     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-06
       MFS_3  16 WiaslvsnlGtliqevaasWl...mtdisasplmvAlvqaaatLPifllsilaGa.....laDnfdrRkvllavqlllalvsvlltvlaalgllspwll 106
                 W+   + +l t++   ++s +   + di++         +aatL +fl++   G      l++++ r +vl  + l+ ++     +        ++  l
  CDO68683.1  90 WVMVTIVSLYTFVTPLGSSMMapaLPDIAKHYGITSQTEVAATLSVFLVTFAIGPlflapLSEIYGRTWVLHLGNLFFLAFNFGCAY-----SPTVTDL 183
                 66666666666666666665522223455555555667899*******998888522223689999999999999998765543332.....3467789 PP

       MFS_3 107 laltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafav.nalsylalivall 187
                 +++ +l g   +        ++++l + ++  +A+a+ s+g  +   +GP  gG +  ++G  + f v + l+++a +v + 
  CDO68683.1 184 IGFRILSGFVGSAPIACGGGTISDLFSEKERASAMAIYSLGPLLGPVIGPVAGGFIAETIGFKYIFVVvAGLAFIAAVVGIP 265
                 99999999877778888899******************************************99997625688888887765 PP

>> FPN1  Ferroportin1 (FPN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.4e-06     0.025     160     240 ..     227     303 ..     210     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.4e-06
        FPN1 160 lckllapllvglllsfvslkiaigfilvvnlvsvvveyillakvYrkvpalaekeekkeeeeeeakeeetkakeaksessl 240
                 l  +++p++ g++  +++ k+  +++++++ ++ vv + +l+++Y+ v  l++ +++++ e+ ++++     +  +++ s 
  CDO68683.1 227 LGPVIGPVAGGFIAETIGFKYIFVVVAGLAFIAAVVGIPFLRETYHPVIRLRRARKVADPEKAAKAH----PHLIAEHGSK 303
                 56799************************************************99999977776665....4444444444 PP

>> Sensor_TM1  Sensor N-terminal transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   3.4e-05       0.1      11      34 ..     317     340 ..     310     343 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
  Sensor_TM1  11 sLtrkIillnLlaLvvLvaGiLYl 34 
                  Ltr Ii + L a ++L+ Gi Yl
  CDO68683.1 317 LLTRSIICFLLSAYMALMYGIYYL 340
                 59*********************9 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.7   0.00032      0.96      48     111 ..      87     161 ..      81     172 .. 0.82
   2 ?    0.3   0.1      0.17   5.1e+02     105     146 ..     286     327 ..     286     336 .. 0.82
   3 ?   -3.0   0.0       1.7   5.2e+03       8      36 ..     367     395 ..     362     399 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00032
       DUF21  48 nperlLstlligntlvnillsalatalfvellae..........galavviatviv.tllilvfgEilPkslalk 111
                 + +++++t++ + t+v+ l s+++++++ ++ ++           +l+v+++t+++  l++  ++Ei  +++ l+
  CDO68683.1  87 HKKWVMVTIVSLYTFVTPLGSSMMAPALPDIAKHygitsqtevaATLSVFLVTFAIgPLFLAPLSEIYGRTWVLH 161
                 56899**********************9998888999***87777778888888887778888888888877766 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
       DUF21 105 PkslalkyaekialalapplrvlmvllyPlvwllskllnlil 146
                 P   a++++  ia   + + r++   ++P++ l + ++ ++l
  CDO68683.1 286 PEKAAKAHPHLIAEHGSKVHRLWVDMTRPFILLTRSIICFLL 327
                 666788999999999999999999999999999877765555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.7
       DUF21   8 llsaffsgaEtAlvslsrlrleelaekgk 36 
                 l+ +ffs+  ++   ++++  +  a++g 
  CDO68683.1 367 LGVGFFSATLFGAYFADQVYAHLVAKNGG 395
                 56788888888777777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3683.01
//
Query:       CDO68684.1  [L=994]
Description: hypothetical protein BN946_scf184652.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-52  176.6   0.0    6.6e-51  172.6   0.0    2.4  2  DEAD            DEAD/DEAH box helicase
    9.1e-27   93.6   0.0    3.3e-26   91.8   0.0    2.0  2  Helicase_C      Helicase conserved C-terminal domain
     0.0025   17.9   0.0      0.011   15.7   0.0    2.1  2  ResIII          Type III restriction enzyme, res subunit
      0.008   16.7   0.1      0.008   16.7   0.1    5.3  6  NuDC            Nuclear distribution C domain
  ------ inclusion threshold ------
       0.03   14.7   0.3        4.3    7.8   0.0    4.2  4  GHMP_kinases_C  GHMP kinases C terminal
       0.19   11.2   0.9       0.56    9.6   0.9    1.7  1  AviRa           RRNA methyltransferase AviRa


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   0.0   2.2e-54   6.6e-51       1     174 [.     358     530 ..     358     532 .. 0.94
   2 ?    1.2   0.0     0.089   2.7e+02      39     105 ..     575     642 ..     566     659 .. 0.67

  Alignments for each domain:
  == domain 1  score: 172.6 bits;  conditional E-value: 2.2e-54
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 t+iQa+aip+i++g+dv++ a+TGsGKT afl+p+++++ ++   ++ +gp a+i++PtreLa q+++++k f+  ++lr+++ +gg++ +dq++++++
  CDO68684.1 358 TPIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQrplEQMEGPIAVIMTPTRELAVQIHRECKPFLRVLGLRAVCAYGGSPIKDQIAEMKK 456
                 89*************************************8889999***************************************************** PP

                 TCSEEEEEHHHHHHHH..HCTS.SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddll..stgk.lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 g++i+v tpgr++dll  ++g+  nl++v++lVlDEadr+ d+gf++++ +i+n++       + +rq++++SAT+pk+++
  CDO68684.1 457 GAEIIVCTPGRMIDLLtaNSGRvTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNI-------RPDRQTVLFSATFPKQMD 530
                 **************99884444377*******************************.......35678*********8776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.089
                 HHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  39 vyet.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgtp 105
                 + +t +++++ ++li +  +e a + l++l + +  + ++++    +v++++ ++++++g v iv++t 
  CDO68684.1 575 LGQTyNEDPESRTLIFVDRQEAADNLLRELMRKGY-LCMSLHGGKDQVDRDSTIADFKSGvVPIVIATS 642
                 333345889999***************99977666.333444334455555555555677999999997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.2   9.5e+03      19      61 ..     410     456 ..     402     464 .. 0.65
   2 !   91.8   0.0   1.1e-29   3.3e-26       2     111 .]     567     679 ..     566     679 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.2
                 EEEEESSHH...HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  19 ilifvntid...rlek...vklllekkgikvavlhgelpqnereeileq 61 
                 ++i+++t++   +      +k +l+  g+++++ +g  p +++++ +++
  CDO68684.1 410 AVIMTPTRElavQ--IhreCKPFLRVLGLRAVCAYGGSPIKDQIAEMKK 456
                 5777777775332..1334455555558999999998888888776665 PP

  == domain 2  score: 91.8 bits;  conditional E-value: 1.1e-29
                 HHHHHHHHH...HHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell...kleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 k+++lle+l    +e  ++++lifv +++ +++   +l+  +kg+ +  lhg   q +r+ ++++f++g + ++iat+va+rG+d+++++lVin+d+p 
  CDO68684.1 567 KFNRLLEILgqtYNEDPESRTLIFVDRQEAADNllRELM--RKGYLCMSLHGGKDQVDRDSTIADFKSGVVPIVIATSVAARGLDVKQLKLVINYDAPN 663
                 67888888888889999**************95533333..779******************************************************* PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                  +++y++r+GRtgRag
  CDO68684.1 664 HMEDYVHRAGRTGRAG 679
                 **************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.8e-06     0.011       6     170 ..     359     526 ..     355     527 .. 0.73
   2 ?   -1.7   0.0      0.83   2.5e+03      45      74 ..     575     604 ..     571     630 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.8e-06
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--. CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseayke.igkkvsgdkkkak 97 
                 + Q++ai ++++       + ++ ++ TG+GKT+   + + ++++ +++ e      ++++ p+++l  q  +e k fl     + ++    +  k++ 
  CDO68684.1 359 PIQAQAIPAIMSG------RDVIGVAKTGSGKTIAFlLPMFRHIKDQRPLEqmegpIAVIMTPTRELAVQIHRECKPFLRVLGLRaVCAYGGSPIKDQI 451
                 5566666666533......34677889********9455555666666666999*999*******************9998877764444333333334 PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                 ++ ++ ++i+v t  ++   +  + +       +r  +++ DEa r+ ++    ++ +i++++++    + ++AT++
  CDO68684.1 452 AEMKKGAEIIVCTPGRMIDLL--TANSGRVTNLKRVTYLVLDEADRMFDMgfePQVMKIVNNIRPdRQTVLFSATFP 526
                 6678999******99998888..233344444555559***********97655888888888654778899***86 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.83
                 HHHH-S.....-EEEEESSHHHHHHHHHHG CS
      ResIII  45 ierllkkgkeekflflvprkslleqtleef 74 
                   + +++ +e+++l++v+r++  + +l+e+
  CDO68684.1 575 LGQTYNEDPESRTLIFVDRQEAADNLLREL 604
                 55667778889********99888887765 PP

>> NuDC  Nuclear distribution C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   3.0         6   1.8e+04      27      39 ..      83      94 ..      68     108 .. 0.50
   2 ?   -2.2   2.0       2.1   6.4e+03      45      65 ..     186     206 ..     166     207 .. 0.58
   3 ?   -3.9   1.5         6   1.8e+04      58      65 ..     243     250 ..     216     258 .. 0.47
   4 !   16.7   0.1   2.7e-06     0.008       7      28 ..     302     323 ..     300     326 .. 0.90
   5 ?   -1.4   5.3       1.2   3.6e+03      24      56 ..     745     777 ..     743     785 .. 0.62
   6 ?   -1.3   1.3       1.1   3.2e+03      26      47 ..     821     842 ..     817     853 .. 0.55

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6
        NuDC 27 kKkkeekekqaka 39
                kK++e k++  ++
  CDO68684.1 83 KKEREAKKA-LDE 94
                233332222.222 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
        NuDC  45 kkkdkaeeekseseeeEDEkD 65 
                 ++   a+ ++++  +e+DE D
  CDO68684.1 186 DGAAAAQPKAADAMDEDDEVD 206
                 222223356666666777655 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 6
        NuDC  58 eeeEDEkD 65 
                  +e+ E+D
  CDO68684.1 243 HGEDAEED 250
                 22222222 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2.7e-06
        NuDC   7 pkIkELTDeEAekLQlElDqkK 28 
                 p I E+TDeEA+ L lElD  K
  CDO68684.1 302 PDIAEMTDEEADLLRLELDGIK 323
                 89*****************766 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.2
        NuDC  24 lDqkKkkeekekqakaesaaekkkdkaeeekse 56 
                 lDq+++++ek + +  ++ +e+k + a   ++e
  CDO68684.1 745 LDQERDAREKAERKAYGETEEEKAEAAAATATE 777
                 788888888777777777777666665533333 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 1.1
        NuDC  26 qkKkkeekekqakaesaaekkk 47 
                 q+K++e+ ++   a+++a +  
  CDO68684.1 821 QQKEEEKLQASLRAAQEAAERA 842
                 6666666666555555554443 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.38   1.1e+03      44      70 ..     370     400 ..     357     409 .. 0.71
   2 ?   -0.9   0.0      0.74   2.2e+03      31      56 ..     592     615 ..     566     617 .. 0.71
   3 ?    7.8   0.0    0.0015       4.3      25      60 ..     703     739 ..     690     740 .. 0.89
   4 ?   -0.8   0.1       0.7   2.1e+03      20      47 ..     819     843 ..     809     848 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.38
  GHMP_kinases_C  44 selGalgaklsGaGgGptvfalf......kdkd 70 
                     s  +++g+  +G+  G t++ l       kd+ 
      CDO68684.1 370 SGRDVIGVAKTGS--GKTIAFLLpmfrhiKDQR 400
                     5556899999***..*****9986666655555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.74
  GHMP_kinases_C  31 ilppeleellealselGalgaklsGa 56 
                        ++ ++ll++l++ G  + ++s  
      CDO68684.1 592 DRQEAADNLLRELMRKG--YLCMSLH 615
                     45677788888898888..7777766 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0015
  GHMP_kinases_C  25 lkavvgilppeleelleal.selGalgaklsGaGgGp 60 
                     lka   ++p ele+l + + +++ a  ak+ G+G+G+
      CDO68684.1 703 LKASNVVVPKELEDLANGFlEKVKAGKAKVAGSGFGG 739
                     57788999***********99999***********97 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.7
  GHMP_kinases_C  20 sqrselkavvgilppeleellealselG 47 
                     +++ ++  + ++l  +l+++ ea++++G
      CDO68684.1 819 LAQ-QK--EEEKLQASLRAAQEAAERAG 843
                     333.46..88899999999999999999 PP

>> AviRa  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.9   0.00019      0.56     107     198 ..     828     922 ..     812     930 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
       AviRa 107 lakreeelrelaeeyek..eshaealesaerleellakkgeekeievfkaditekeeeaeke.vdivitDlPYGelvswqgeseepvkqllesla 198
                 l++  +  +e ae+ +k  ++h++al+ +++l+++l++++   + ++ + ++t+k+++   +  + +i    Y + ++w+ +++e + ql++   
  CDO68684.1 828 LQASLRAAQEAAERAGKdtPAHKQALSVVAKLNAQLRAHKLVAQSQLQHEELTTKRNAIDATeFHAIIPINDYPQKARWRVTNKETMVQLIDMTG 922
                 555555556666665552279******************************998777655434777777667889*******9999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1323  (0.0737911); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.42
# Mc/sec: 7048.71
//
Query:       CDO68685.1  [L=589]
Description: hypothetical protein BN946_scf184652.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-44  152.1   0.0    1.1e-44  152.1   0.0    1.6  2  PI31_Prot_N  PI31 proteasome regulator N-terminal


Domain annotation for each model (and alignments):
>> PI31_Prot_N  PI31 proteasome regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.0     6e-49   1.1e-44       3     163 .]      24     173 ..      22     173 .. 0.93
   2 ?   -4.3   1.1      0.77   1.4e+04      32      53 ..     529     544 ..     518     553 .. 0.44

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 6e-49
  PI31_Prot_N   3 sdLsssydalallvHacmtalgFrlvglgedkkieesesksecqslaprLpaeWna.ssdsysFrYaheqssmefvlkvdrlgnklvirglalgddki 99 
                  ++L+s++da+a+l+H+++t lgFrl+ ++e+  +       +   +++ Lp+eWn+ +++sy FrY+heqss+ef++kv++lgn+++++ +a+++dk+
   CDO68685.1  24 KKLESPQDAIAALIHTVFTVLGFRLISTDESGPSR------T--LENNVLPEEWNQhGPGSYVFRYRHEQSSLEFLVKVVKLGNRTLVNSIAVETDKT 113
                  789****************************7763......2..23345************************************************* PP

  PI31_Prot_N 100 asfelavrdyvsssalPvritgedrsd.laeklkdvfiseerladLisllkvsivqklvpglske 163
                  as+++a++d++s+s++P +++       ++ +l ++fis++r++d++s+lk   +qkl+pgl+ke
   CDO68685.1 114 ASLDVATSDFTSTSFFPHDLS-----AsNPPPLVHGFISSNRINDFVSQLKLTTLQKLMPGLRKE 173
                  *****************6654.....448999*******************************97 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 0.77
  PI31_Prot_N  32 edkkieesesksecqslaprLp 53 
                  +d++ e      e ++++++  
   CDO68685.1 529 DDDEDE------EDDEEKEEGR 544
                  222222......2222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4174.25
//
Query:       CDO68686.1  [L=948]
Description: hypothetical protein BN946_scf184652.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-31  106.3   7.5    1.7e-13   50.8   0.2    4.4  5  Ank_4       Ankyrin repeats (many copies)
    1.3e-28   98.6   0.8    7.8e-10   38.8   0.0    4.7  4  Ank_5       Ankyrin repeats (many copies)
    2.7e-27   95.2   0.1    1.6e-15   57.4   0.0    3.5  3  Ank_2       Ankyrin repeats (3 copies)
    3.1e-21   73.2   0.7    2.9e-05   24.1   0.0    5.5  5  Ank_3       Ankyrin repeat
    5.7e-17   61.3   1.8     0.0017   18.7   0.1    5.0  5  Ank         Ankyrin repeat
    2.7e-16   59.4   9.9    2.7e-16   59.4   9.9    2.3  3  FYVE        FYVE zinc finger
     0.0086   15.8   2.0     0.0086   15.8   2.0    1.9  2  zf-RING_11  RING-like zinc finger
  ------ inclusion threshold ------
      0.016   15.2   0.6      0.035   14.1   0.6    1.6  1  zf-RING_9   Putative zinc-RING and/or ribbon
      0.029   14.7  14.9      0.056   13.8   1.5    3.6  3  zf-RING_2   Ring finger domain
        3.4    7.9  10.1       0.35   11.1   3.2    2.5  2  FYVE_2      FYVE-type zinc finger


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   6.9e-10   1.2e-06       2      55 .]      71     133 ..      70     133 .. 0.83
   2 !   44.5   0.2   8.7e-15   1.6e-11       2      55 .]     114     167 ..     113     167 .. 0.93
   3 !   50.8   0.2   9.4e-17   1.7e-13       3      54 ..     149     199 ..     147     199 .. 0.97
   4 !   10.1   0.0   0.00052      0.94       7      39 ..     205     237 ..     204     242 .. 0.86
   5 ?   -3.5   0.0        10   1.8e+04      14      30 ..     921     937 ..     918     945 .. 0.57

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 6.9e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLl.....ekgad....inaqdnrsGetalhiAakrgnveilklLl 55 
                 l+aLh+aa+sg+l+ v+  +     + ++d     n  ++r G+talh Aa+rg+++i+k+L+
  CDO68686.1  71 LEALHAAAASGDLRRVQTEFrkavrADDVDpfelANDASPRTGLTALHAAASRGYLDIAKWLI 133
                 689**************9886555555555666666667899********************8 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 8.7e-15
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ltaLh+aa+ g l+++++L+e  ga ++   +++Getalh+Aa++g++ i+++Ll
  CDO68686.1 114 LTALHAAASRGYLDIAKWLIEEcGAIPDI-EDKEGETALHKAALNGHLPIIRYLL 167
                 89******************988887777.599*********************8 PP

  == domain 3  score: 50.8 bits;  conditional E-value: 9.4e-17
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 taLh+aa  g+l+++r+Ll  + d++a  +++G+talh+A+++g+++i+++L
  CDO68686.1 149 TALHKAALNGHLPIIRYLLPEKSDVHAK-DADGWTALHNACSKGYLDIVRWL 199
                 89*************************9.**********************9 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00052
       Ank_4   7 yaaisgrlelvrlLl.ekgadinaqdnrsGetal 39 
                 +aa++g+l++v +Ll  + ad+  + n+ Geta 
  CDO68686.1 205 NAASKGHLPVVLYLLtKQSADPLVR-NNWGETAY 237
                 6999***********5559******.******95 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 10
       Ank_4  14 lelvrlLlekgadinaq 30 
                 l+l+++Ll+k   + + 
  CDO68686.1 921 LKLIAYLLAKLELVSCL 937
                 68899999664334444 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.1e-06    0.0019      10      36 ..     107     133 ..     103     138 .. 0.86
   2 !   38.8   0.0   4.4e-13   7.8e-10       1      54 [.     132     185 ..     132     185 .. 0.94
   3 !   25.4   0.1   7.2e-09   1.3e-05      12      41 ..     176     205 ..     171     206 .. 0.84
   4 !   23.7   0.0   2.4e-08   4.3e-05      22      56 .]     205     240 ..     204     240 .. 0.97

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.1e-06
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLl 36 
                 +++ + g t+Lh Aa++g++d++++L+
  CDO68686.1 107 DASPRTGLTALHAAASRGYLDIAKWLI 133
                 57778999******************9 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 4.4e-13
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 L+e++ a ++ +d++g+t+Lh Aa +g+++++r+Ll + +d  ++d++G+tal+
  CDO68686.1 132 LIEECGAIPDIEDKEGETALHKAALNGHLPIIRYLLPEKSDVHAKDADGWTALH 185
                 56666799********************************************96 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 7.2e-09
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargad 41 
                 +d +g t+Lh+A+++g++d+vr+L+++g++
  CDO68686.1 176 KDADGWTALHNACSKGYLDIVRWLCEHGVN 205
                 555555*********************997 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 2.4e-08
       Ank_5  22 vAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 +Aa++g+++vv++Ll +  ad+ +++++G+ta+d+A
  CDO68686.1 205 NAASKGHLPVVLYLLtKQSADPLVRNNWGETAYDVA 240
                 69********************************99 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.3e-10   9.5e-07      13      81 ..      56     142 ..      50     145 .. 0.69
   2 !   57.4   0.0   8.9e-19   1.6e-15      21      78 ..     141     205 ..     136     206 .. 0.84
   3 !    6.4   0.0    0.0075        13      33      62 ..     206     242 ..     204     261 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 5.3e-10
       Ank_2  13 vklLl.egadpnkngktaLhyAakngnleivklLleh............ad....ndgrtpLhyAarsghleivklLl.ekgadinl 81 
                 v+ L+ +++ p+   + aLh+Aa +g+l  v++   +            a+    ++g t+Lh+Aa+ g+l+i+k+L+ e+ga +++
  CDO68686.1  56 VQSLVpSKSHPSAAQLEALHAAAASGDLRRVQTEFRKavraddvdpfelANdaspRTGLTALHAAASRGYLDIAKWLIeECGAIPDI 142
                 56666544344324589*********8866644443234435656656633677888*********99**********555886555 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 8.9e-19
       Ank_2  21 dpn.kngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgad 78 
                 d++ k+g+taLh Aa ng+l i+++Ll +       d dg+t+Lh+A+++g+l+iv++L+e+g++
  CDO68686.1 141 DIEdKEGETALHKAALNGHLPIIRYLLPEksdvhaKDADGWTALHNACSKGYLDIVRWLCEHGVN 205
                 333349*********************855565566699*********************99865 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0075
       Ank_2  33 AakngnleivklLleh.......adndgrtpLhyAar 62 
                 Aa++g+l +v +Ll +        +n g+t+  +Aa 
  CDO68686.1 206 AASKGHLPVVLYLLTKqsadplvRNNWGETAYDVAAA 242
                 7788888888888865565555444778888766664 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.1     2e+03       5      19 ..      73      87 ..      70      94 .. 0.83
   2 !   17.6   0.0   2.1e-06    0.0038       2      30 ..     113     141 ..     112     142 .. 0.92
   3 !   20.9   0.0   1.8e-07   0.00033       1      30 [.     146     174 ..     146     175 .. 0.89
   4 !   24.1   0.0   1.6e-08   2.9e-05       1      28 [.     179     205 ..     179     207 .. 0.94
   5 ?    4.4   0.0     0.042        75       9      29 ..     206     226 ..     204     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.1
       Ank_3  5 pLhlAarsgnleivk 19
                +Lh Aa sg+l +v+
  CDO68686.1 73 ALHAAAASGDLRRVQ 87
                8********987665 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G t+Lh Aa+ g l+i+k+L+e++ga ++
  CDO68686.1 113 GLTALHAAASRGYLDIAKWLIEECGAIPD 141
                 89********************9999776 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 1.8e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +Get+Lh Aa++g+l+i+++Ll     dv+
  CDO68686.1 146 EGETALHKAALNGHLPIIRYLLP-EKSDVH 174
                 69********************9.577766 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 1.6e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G+t+Lh A++ g l+iv++L+e +g++
  CDO68686.1 179 DGWTALHNACSKGYLDIVRWLCE-HGVN 205
                 69*********************.8987 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.042
       Ank_3   9 AarsgnleivkfLlenkgadv 29 
                 Aa+ g+l++v +Ll +  ad+
  CDO68686.1 206 AASKGHLPVVLYLLTKQSADP 226
                 9**************999997 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   2.9e+03       5      19 ..      73      87 ..      73      90 .. 0.75
   2 !   18.7   0.0   9.7e-07    0.0017       2      31 ..     113     144 ..     112     145 .. 0.91
   3 !   18.7   0.1   9.7e-07    0.0017       2      31 ..     147     177 ..     146     178 .. 0.92
   4 !   17.9   0.0   1.8e-06    0.0032       1      29 [.     179     206 ..     179     209 .. 0.90
   5 ?    1.6   0.0      0.25   4.4e+02       9      32 .]     206     231 ..     206     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
                HHHHHHHHTTHHHHH CS
         Ank  5 PLHlAatngkkriik 19
                +LH Aa  g++r ++
  CDO68686.1 73 ALHAAAASGDLRRVQ 87
                8**999667777665 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 9.7e-07
                 SBBHHHHHHHHTTHHHHHHHH..TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGAnlnald 31 
                 G T+LH Aa++g ++i+k+L+  +GA +++ d
  CDO68686.1 113 GLTALHAAASRGYLDIAKWLIeeCGAIPDIED 144
                 89*******************988*9888877 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 9.7e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G T+LH Aa ng++ ii++LL   ++++a+d
  CDO68686.1 147 GETALHKAALNGHLPIIRYLLpEKSDVHAKD 177
                 99*******************9766****99 PP

  == domain 4  score: 17.9 bits;  conditional E-value: 1.8e-06
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlna 29 
                 dG+T+LH A++ g ++i+++L  hG  +na
  CDO68686.1 179 DGWTALHNACSKGYLDIVRWLCeHG--VNA 206
                 9*********99*************..555 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.25
                 HHHHTTHHHHHHHH..TTTSTTCBTT CS
         Ank   9 AatngkkriiklLL..hGAnlnaldn 32 
                 Aa+ g++ ++ +LL  ++A++  ++n
  CDO68686.1 206 AASKGHLPVVLYLLtkQSADPLVRNN 231
                 567899999999**9779***99887 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   9.9   1.5e-19   2.7e-16       2      67 ..     687     762 ..     686     763 .. 0.87
   2 ?   -2.5   0.1       3.4   6.1e+03       8      19 ..     804     815 ..     799     831 .. 0.71
   3 ?   -2.3   0.4       2.7   4.9e+03      10      25 ..     859     876 ..     857     882 .. 0.67

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.5e-19
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE...........GGGTEEEEEEE-HHHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall...........ekeaeeksvrvCkeClaels 67 
                 +w++d++v++C+ C+++F++l+rr hCr CG+++C++Css ++ l            e+++ ++++rvC+ C++e++
  CDO68686.1 687 QWERDEAVSECRDCRRRFTFLNRR-HCRRCGRIFCDRCSSYRALLDpsevvhdpsfpESSVGTSQQRVCRGCYEEVN 762
                 8*******************8887.7*************888766667777777888888888999*******9985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.4
                 --SB-TTT--B- CS
        FYVE   8 evkkCeiCakkF 19 
                 + ++C+ C+ + 
  CDO68686.1 804 DLAECPVCNVSL 815
                 567899998775 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.7
                 SB-TTT--B-..-SSS-- CS
        FYVE  10 kkCeiCakkF..sllrrr 25 
                 ++C iC ++F    ++ r
  CDO68686.1 859 TECVICLEEFvkGSTVAR 876
                 589999999943234555 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       4.4   7.8e+03       1       5 [.     807     811 ..     807     815 .. 0.84
   2 !   15.8   2.0   4.8e-06    0.0086       1      25 [.     860     884 ..     860     886 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
  zf-RING_11   1 eCsIC 5  
                 eC +C
  CDO68686.1 807 ECPVC 811
                 8**** PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.8e-06
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFH 25 
                 eC+ICLeef +g ++  l+C   FH
  CDO68686.1 860 ECVICLEEFVKGSTVARLSCLCSFH 884
                 9******************977777 PP

>> zf-RING_9  Putative zinc-RING and/or ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6     2e-05     0.035       1      51 [.     710     760 ..     710     816 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
   zf-RING_9   1 rlCeYsgkyyCskChsndkaviParilqnwdfkkykvskaakellesieek 51 
                 r+C+ +g+++C++C+s +  + P+ ++++  f + +v ++ +++ + ++e+
  CDO68686.1 710 RHCRRCGRIFCDRCSSYRALLDPSEVVHDPSFPESSVGTSQQRVCRGCYEE 760
                 89**********************************999998888777665 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.9     0.023        42       2      30 ..     696     724 ..     695     734 .. 0.75
   2 ?    0.8   0.0      0.36   6.5e+02       2      43 ..     807     811 ..     792     819 .. 0.70
   3 ?   13.8   1.5   3.1e-05     0.056       2      27 ..     860     885 ..     859     886 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.023
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreCl 30 
                 eC  C  +++  ++ ++  Cg +f+  C 
  CDO68686.1 696 ECRDCRRRFTFLNRRHCRRCGRIFCDRCS 724
                 7888988886655555447*********6 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.36
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlC 43 
                 e                                     CP+C
  CDO68686.1 807 E-------------------------------------CPVC 811
                 2.....................................7777 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 3.1e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhr 27 
                 eC+IClee+ ++++v +l C  +fh 
  CDO68686.1 860 ECVICLEEFVKGSTVARLSCLCSFHN 885
                 9***************9999656996 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.2    0.0002      0.35      54      89 ..     694     727 ..     685     765 .. 0.86
   2 ?   -0.3   0.6      0.68   1.2e+03      50      79 ..     854     883 ..     848     895 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
      FYVE_2  54 ethCilCleefkllvnskrqCldCklnvCkkCsven 89 
                 +++C  C ++f++l   +r+C  C    C +Cs++ 
  CDO68686.1 694 VSECRDCRRRFTFLN--RRHCRRCGRIFCDRCSSYR 727
                 678**********95..799*************983 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.68
      FYVE_2  50 aklgethCilCleefkllvnskrqCldCkl 79 
                 ++l  t+C+ Cleef    +  r    C +
  CDO68686.1 854 STLIGTECVICLEEFVKGSTVARLSCLCSF 883
                 5677799*******9877776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 5726.15
//
Query:       CDO68687.1  [L=614]
Description: hypothetical protein BN946_scf184652.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-16   59.9   0.0    4.7e-16   59.3   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain
    1.1e-14   54.6  13.8    1.2e-14   54.5  10.9    2.2  2  Ferric_reduct  Ferric reductase like transmembrane component
    7.2e-14   51.8   0.0    1.5e-13   50.8   0.0    1.5  1  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
      0.021   15.5   0.0      0.044   14.4   0.0    1.6  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0     1e-19   4.7e-16       1     152 [.     422     583 ..     422     587 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1e-19
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxx.............x RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvL.neleeekse.gnieihiYlTseyea.............e 81 
                    ye+ +l+agG+G+++++++l dl+ + ++e+ +++++ ++w+vres++l w+++ L + l+  +++   +e hiY+T+ +               +
     CDO68687.1 422 YETCILIAGGSGVSYTLPLLLDLVHRARAETSDVRRVIFVWAVRESDHLAWISKTLnDALSAAQPTsLLVEPHIYITGPTCTlpemmprsnsytpS 517
                    78889***************************************************7778888888899*********998888877777764443 PP

                    xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  82 dasdqlissiegenseslk..qgvdavsgtrnvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevk 152
                    d s++ +s    +++e++k  ++  + s   + ki  gRP ++++l++   ++  + v v v Gp +l+  v+
     CDO68687.1 518 DGSSTPTSP---TDVEKEKldKELPVYS---SLKIVHGRPSIRRILQEG-IDASVGPVSVDVAGPSSLSVSVS 583
                    333333333...3333333333333344...566************998.77788889999999999987765 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22   9.8e+02      80     101 ..      39      60 ..      14      68 .. 0.68
   2 !   54.5  10.9   2.6e-18   1.2e-14       2     123 ..     154     265 ..     153     267 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
  Ferric_reduct  80 nllGvlalllliilaitSlkfi 101
                     ++G++a+l+ + ++ ++l+++
     CDO68687.1  39 LITGIIAFLVVVRVLRLALHSL 60 
                    3499999999998877776554 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 2.6e-18
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitS 97 
                    +++a  +lp+++ la++nn++++ tg++++kl+ +H+  ++++++l+++H++  ++  l           +  +++ ++++G  +l ++ +  i+S
     CDO68687.1 154 AHLASCQLPFIVALAGKNNIISFFTGIGHEKLNVLHRAAARTCLILLWIHALSRAISGLS---------DNFDFSHGWMRWGATGLTAFTLATIFS 240
                    678999**************************************************9986.........46788999999**************** PP

  Ferric_reduct  98 lkfirrrlsyelFyylHhllyvayll 123
                    ++fir + ++e+F+++H++l+ ++l+
     CDO68687.1 241 VRFIR-NAFFEFFLVSHIILVGIFLI 265
                    *****.***************99987 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   3.3e-17   1.5e-13       5     108 ..     314     416 ..     311     417 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 3.3e-17
  FAD_binding_8   5 skakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasape.........ddklslvikvksgltkklakkllssskkele 91 
                    s a v+l+ +d+i+l+++++   + + +Gq++y+ +p++s l  + HPFtias p          ++ ++ +i+ + g+t +l+++  +s      
     CDO68687.1 314 STAAVELVSSDTIRLTLKRK---FSWRPGQHAYVVLPTVSDLPTEAHPFTIASIPTaldgtdgpaEKDVVFLIRGRRGFTGRLREHAERS------ 400
                    67899************985...67******************************99999999888999******************997...... PP

  FAD_binding_8  92 nkkaklkvlidGPYGap 108
                     +++++  ++dGPYG p
     CDO68687.1 401 -GQTRVPAFVDGPYGCP 416
                    .7899999*******75 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.7e-06     0.044       1      42 [.     427     472 ..     427     500 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.7e-06
                    EEEEGGGGHHHHHHHHHHHHHCT....TCSEEEEEEEESSGCGSTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak....dktkvvlvyGnrteedlly 42 
                    +iagG+G+++++ +l  ++++a     d ++v++v+++r++++l+ 
     CDO68687.1 427 LIAGGSGVSYTLPLLLDLVHRARaetsDVRRVIFVWAVRESDHLAW 472
                    7***********99999998855678899*************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4015.14
//
Query:       CDO68688.1  [L=441]
Description: hypothetical protein BN946_scf184652.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-66  225.2   0.0    1.5e-66  225.0   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    2.2e-06   27.2   0.0      4e-06   26.4   0.0    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    1.9e-05   23.4   0.0      5e-05   22.0   0.0    1.6  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00019   20.9   0.0     0.0003   20.2   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00047   19.2   0.0      0.011   14.7   0.0    2.1  2  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.0   0.0   4.3e-70   1.5e-66       2     363 .]      49     433 ..      48     433 .. 0.95

  Alignments for each domain:
  == domain 1  score: 225.0 bits;  conditional E-value: 4.3e-70
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    d+inLg++ + ++    +++ v++a+ + al +  +n y++++g   l+ea+ + ++ + + +l+ +++++v+sGa++++  ++ ++ l+ gde++
     CDO68688.1  49 DCINLGQGYMNFA----PPEWVKHAAED-ALNSVATNHYSHPKGRLRLREAIKDHYSPQFGRDLNVDSEILVTSGANEGQYSVFVAF-LEQGDEVI 138
                    79***********....88888888988.****************************9999999***********************.******** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEET........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEE CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyse........edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllf 185
                    +++p++++y + +  +gg  v++pl+++         ++++d+++l +al+       +tk+i+v++phNP G+v+t++ele+++++a+++nll++
     CDO68688.1 139 MFEPFFDQYLPSVTFNGGVPVYVPLHPPkhegshssSEWTIDFDELRRALTP------RTKMIIVNTPHNPVGKVFTRQELEQIAAIAEEHNLLVM 228
                    **************************99************************......************************************** PP

                    EEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 186 vDeaYagfvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemr 278
                    +De+Y  +vf++ ++v+ +a++    + +++vgs +K f+++G+RvG+++g a +++    + +++ +   s+lq+a+a  l+ a ++  +l+  r
     CDO68688.1 229 SDEVYDSLVFDDNEHVR-IATLPGMWDrTVTVGSAGKMFAATGWRVGWLIGPASIIQPTLAATTRIVFcsNSPLQEAAAVGLEEATQRG-FLDLQR 322
                    ***********887766.66666655589**********************99999988777777777679***************976.****** PP

                    HHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH..............CHHHHHHH......HHHTCTEEEEEGGGGTS.......TTEEEEE CS
  Aminotran_1_2 279 qrlqkrrkelrdeLaelglkvlasqsgmflltdlsae..............takelskk......Lleevgvyvtpgtsftv.......pgrlRit 347
                    +++ +rr+ l++++++lg k++ +q+ +f+l d+s+               +  ++ ++      ++ e gv  +p+++f++       ++  R+ 
     CDO68688.1 323 KQYTERRDILTAGFDKLGMKYTVPQGSYFVLLDISNVkwpedypfpesvlgRGRDFRQApracwfIAMEIGVSSIPVSEFYCeehtsigENYARFA 418
                    **************************************************999999999999999999**************************** PP

                    CTTS-HHHHHHHHHHH CS
  Aminotran_1_2 348 vAglteeeleelveal 363
                    + + + ++l+++ve+l
     CDO68688.1 419 F-CKDVDTLKQAVERL 433
                    *.************97 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.1e-09     4e-06      36     144 ..     107     230 ..      86     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.1e-09
                      HT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-T.........TTSSB-GGGCGGG--TTEEEEE...E CS
  DegT_DnrJ_EryC1  36 lgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdp.........dtynidpaaieaaitertkaIl...p 117
                      l+v+  i v+sG +  + +  +  +++gdeVI+    F     +v+ +g +pv+v  +p           ++id +++++a+t+rtk I+   p
       CDO68688.1 107 LNVDSEILVTSGANEGQYSVFVAFLEQGDEVIMFEPFFDQYLPSVTFNGGVPVYVPLHPpkhegshssSEWTIDFDELRRALTPRTKMIIvntP 200
                      566666677777776666666777889****************************99983332222224699*****************83334 PP

                      B-GGGB--...-HHHHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 118 VhlyGqva...dmdalkaiaakhglkvieD 144
                       + +G+v+   +++++ aia++h+l v++D
       CDO68688.1 201 HNPVGKVFtrqELEQIAAIAEEHNLLVMSD 230
                      567999987779****************99 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.4e-08     5e-05      79     178 ..     122     235 ..     106     240 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.4e-08
                      HHHHHHHTTS-TTEEEEEESTSS..........HHHHHHHHHTHHH.TTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT---...-HHH CS
  Cys_Met_Meta_PP  79 AiaaailallkaGdeivvsddlY..........ggtqrllkkvlkk.lgievkfvdtsdleelekaikentklvylEtptnpllkvv...Diek 158
                       + ++++a+l++Gde+++ +  +          gg   ++    +k  g +++   t d++el++a++++tk++ + tp np+ kv     +e+
       CDO68688.1 122 GQYSVFVAFLEQGDEVIMFEPFFdqylpsvtfnGGVPVYVPLHPPKhEGSHSSSEWTIDFDELRRALTPRTKMIIVNTPHNPVGKVFtrqELEQ 215
                      455666777777777777665551111111111222222222333312333334445799***********************99954448*** PP

                      HHHHHHHTT-EEEEEGTTTH CS
  Cys_Met_Meta_PP 159 iaklakkagvlvvvDntfas 178
                      ia++a ++++lv+ D ++ s
       CDO68688.1 216 IAAIAEEHNLLVMSDEVYDS 235
                      **************998766 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.5e-08    0.0003     108     167 ..     178     230 ..     112     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.5e-08
                      BE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 108 kmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      ++d+++l++a+++      ++k+i++ + +n   G+v + +el+++aaia+++++ ++ D
       CDO68688.1 178 TIDFDELRRALTP------RTKMIIVNTPHNP-VGKVFTRQELEQIAAIAEEHNLLVMSD 230
                      7888899999988......699****999995.9************************99 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.021        77      57      93 ..     108     139 ..      98     142 .. 0.86
   2 !   14.7   0.0     3e-06     0.011     123     177 ..     175     232 ..     171     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.021
                  T-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEE CS
  Aminotran_5  57 naeseeeiiftsGtteainlvalslarslkpgdeivv 93 
                  n++  +ei++tsG+ e+   v  ++   l++gde+++
   CDO68688.1 108 NVD--SEILVTSGANEGQYSVFVAF---LEQGDEVIM 139
                  555..5**********988899999...99****996 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3e-06
                  TTSCBEGGGHHHH--TTEEEEEEESBETTTTE...B--HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5 123 eegeldldelekllnektklvaithvsnvtGt...iqpveeigklakkkgalvlvDaa 177
                  +e+++d del+ +l+++tk+++++   n  G     q++e+i+++a +++ lv+ D +
   CDO68688.1 175 SEWTIDFDELRRALTPRTKMIIVNTPHNPVGKvftRQELEQIAAIAEEHNLLVMSDEV 232
                  6899***************************6333689***************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2952.28
//
Query:       CDO68689.1  [L=1618]
Description: hypothetical protein BN946_scf184652.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-75  251.6   0.0    9.5e-75  251.1   0.0    1.2  1  Sec63           Sec63 Brl domain
    8.1e-34  116.9   0.4      6e-26   91.3   0.2    3.1  3  DEAD            DEAD/DEAH box helicase
    9.2e-14   51.8   0.0    1.1e-10   41.8   0.0    2.5  2  ResIII          Type III restriction enzyme, res subunit
    2.6e-06   27.8   0.1    0.00016   22.0   0.0    3.6  3  Helicase_C      Helicase conserved C-terminal domain
    4.6e-05   23.7   0.3     0.0021   18.3   0.2    3.0  2  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.021   13.5   0.2      0.036   12.8   0.2    1.2  1  SNF2_N          SNF2 family N-terminal domain
      0.065   13.2   0.1       0.16   11.9   0.1    1.7  1  Glyco_transf_4  Glycosyltransferase Family 4
      0.088   12.6   0.2       0.58    9.9   0.0    2.3  2  AAA_11          AAA domain
       0.12   12.7   0.9       0.33   11.3   0.2    2.1  2  AAA_19          AAA domain


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.1   0.0   4.8e-78   9.5e-75       1     257 []     796    1101 ..     796    1101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 251.1 bits;  conditional E-value: 4.8e-78
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvkediespeaKvniLlqayisrlklegsdl 97  
                  +t+lGria++Yyi++++i++fne+++p+++++d+L++ls+++EF++++vR++E kel++++e++p+ vk+  ++++ KvniLlqayis+ + e+++l
  CDO68689.1  796 CTDLGRIAAKYYIRHKSIEIFNEKFRPKMSEADVLSMLSMSTEFDQVQVRDNEVKELEAMMENIPCAVKGGTDTSQGKVNILLQAYISQQRPEDFAL 892 
                  69*********************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
       Sec63   98 vsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................. 145 
                  vsD++y +qn++ri+ral+ei++s++w++++  l+ +sk +e+rlw++                                                 
  CDO68689.1  893 VSDQAYAAQNGGRIVRALLEIAISRKWANVSAVLMGMSKAIEKRLWPFehplkqfelkadvlynlerwaddytvaelaemtaedigklihlnerhgt 989 
                  **********************************************999************************************************ PP

                  ........S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.S CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 ........lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklastqevkleftvplse 232 
                          +P++ i+++++p+  ++l++ v++e         f+w+++  g++e+fwl+ved ++ ++l++ ++++++  ++    v++ ++vp ++
  CDO68689.1  990 avreaakqFPTVRITYSLRPLGADVLKIAVKVE-------RAFNWSSRvhGSAEPFWLWVEDHDGTNILQLSHLIFRQT-TD-YLHVDFVISVP-NQ 1076
                  *********************************.......99*******************************999554.33.47788888884.56 PP

                  SCCEEEEEEEEESSSSS-EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  233 pgpkqltvrlisdswlgldqevtis 257 
                  ++ +++t+r++sd+w g+++ev++s
  CDO68689.1 1077 TRLPSVTIRFVSDRWQGAEEEVEVS 1101
                  679******************9975 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.2     3e-29     6e-26       9     172 ..     278     454 ..     268     458 .. 0.83
   2 ?   -0.5   0.0      0.45   8.9e+02     133     170 ..     575     614 ..     571     618 .. 0.62
   3 !   21.6   0.0   7.6e-08   0.00015       2      79 ..    1146    1222 ..    1145    1300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 3e-29
                 HHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   9 plil.gggdvlvaaeTGsGKTlaflipvlqivyet.............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 p+++ +++++l++a+TG+GKT ++++ vl+ + ++              ++++ k+++v+P+++La +++++l k+++ +++rv  ++g+ +    +++
  CDO68689.1 278 PTAYqSNENMLICAPTGAGKTDVAMLTVLRVLNQHrshndnsgniaatIERDNFKIIYVAPMKALASEIVRKLGKRLQWLSIRVRELTGDMQ--LTKKE 374
                 44445779*********************7776668888888877776567779*************************9999997777544..46777 PP

                 HHTTCSEEEEEHHHHHHHH..HCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddll..stgkln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 + ++++i+v+tp+++d ++   tg+ +  s+v++l++DE++ l d+ ++  i++i++++ ++ +++++  +++ lSATlp+ 
  CDO68689.1 375 I-AETQIIVTTPEKWDVVTrkPTGEGElASKVKLLIIDEVHLLNDD-RGAVIETIVARTLRQVESTQSIIRIVGLSATLPNY 454
                 7.899***********98876344444589***************8.*******99999888787777778********954 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.45
                 HHHTTTHHHHHHHHHHSHHHCTTSTTTSE..EEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
        DEAD 133 lldqgfsdfinrilnqlpqitcdgklqrq..vivlSATlp 170
                 l d gf+ +   +l++ +++ ++  + r   v++++ATl 
  CDO68689.1 575 LFDHGFGIHHAGMLRTDRNMMERMFEARAikVLCCTATLA 614
                 5566666666666666655555544333334*******96 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 7.6e-08
                  HHHHHHHHHHHTTC.EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE CS
                  xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD    2 diQaeaiplilggg.dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl 79  
                  +iQ++a+  i + + + l++a+T+ GK+   +i+v +++ +  + +   +l+v+P r++  +++++l+   k ++ +v+
  CDO68689.1 1146 AIQSQAFWSITRTRvHTLLCAPTACGKSVLGQIAVWETLRN--SANDSWVLVVSPRRSIGLEVVSELRLQSKAAGATVE 1222
                  79*********87779********************99965..99999******************9888886664443 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   5.6e-14   1.1e-10      22     170 ..     282     452 ..     252     453 .. 0.84
   2 !    7.4   0.0    0.0021       4.1      21      81 ..    1149    1217 ..    1129    1265 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 5.6e-14
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......- CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee................kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnk 104
                 + ++++li ++TG+GKT va+ ++ r+l++++                  k++ ++p k+l +   +++ k l+        +++gd +   +k++ ++
  CDO68689.1 282 QSNENMLICAPTGAGKTDVAMLTVLRVLNQHRSHndnsgniaatierdnfKIIYVAPMKALASEIVRKLGKRLQWLS-IRVRELTGDMQLT-KKEIAET 378
                 5678999*******************9998777799******************************99999988764.4778899999998.9999*** PP

                 SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......T.....TTHHHHHT---SEEEEEESS-S CS
      ResIII 105 kilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....k.....swreilekfkeavllglTATpe 170
                 +i+vtt ++ d     ++ + e  l ++ +++iiDE+H l+++     +     + r++    +   ++gl+AT++
  CDO68689.1 379 QIIVTTPEKWDVVT--RKPTGEGELASKVKLLIIDEVHLLNDDrgaviEtivarTLRQVESTQSIIRIVGLSATLP 452
                 ***********999..45566667778888************86655515555688888777777999******86 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0021
                  .........TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII   21 s.......krdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflsea 81  
                  s       + + + l+ ++T +GK+++  +++ e l+++++ + +l++ pr+s+     +e++  ++ a
  CDO68689.1 1149 SqafwsitRTRVHTLLCAPTACGKSVLGqIAVWETLRNSANDSWVLVVSPRRSIGLEVVSELRLQSKAA 1217
                  344444435666999*************899999999999999**********9988888776655554 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.6   9.2e+03      14      56 ..     328     374 ..     322     380 .. 0.66
   2 !   22.0   0.0   7.9e-08   0.00016      14     111 .]     514     658 ..     503     658 .. 0.63
   3 ?    0.0   0.0      0.53   1.1e+03      39      72 ..    1424    1458 ..    1357    1520 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.6
                 TTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHH CS
  Helicase_C  14 eeggkilifvntidrlek.vklllekk...gikvavlhgelpqnere 56 
                 +++ ki+ +++ +  +++ v+ l ++    +i+v  l+g+++  ++e
  CDO68689.1 328 RDNFKIIYVAPMKALASEiVRKLGKRLqwlSIRVRELTGDMQLTKKE 374
                 56677888888888554445555333346789999999998766655 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 7.9e-08
                 TTTSEEEEEESSHH.HH............................HHHHHH............HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  14 eeggkilifvntid.rl............................ekvkll............lekkgikvavlhgelpqnereeileqfnkgesdvLi 71 
                 +eg+++++fv+ ++ ++                                 +            ++ ++  + ++h+ +   +r+ + + f +  ++vL 
  CDO68689.1 514 REGHQVMVFVHARKeTVkaaeaikesahadgalddfscsehpqyeF----FrrdisqsrnkemRQLFDHGFGIHHAGMLRTDRNMMERMFEARAIKVLC 608
                 6666666666666642233333333333333333333333322220....13333333222114445899999************************** PP

                 ESGGGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSSTT CS
  Helicase_C  72 atdvaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgRag 111
                 +t  ++ G+++p   ++i  + +            +v ++ q  GR+gR g
  CDO68689.1 609 CTATLAWGVNLPAHAVII-KGTQvydsskgaftdLSVLDVLQVFGRAGRPG 658
                 ************555555.444445444666655557************75 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.53
                  T.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C   39 k.gikvavlhgelpqnereeileqfnkgesdvLia 72  
                  +    v  +h  + + +r+ +le f +g +++Li 
  CDO68689.1 1424 FiTRGVGFFHEGIAKPDRLLMLELFADGLIRLLIV 1458
                  24455666777777788888888888887777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   1.1e-06    0.0021       7     117 ..     286     434 ..     281     446 .. 0.63
   2 ?    1.6   0.0      0.16   3.2e+02       4      23 ..    1158    1177 ..    1155    1204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
      AAA_22   7 ilvvtGesGtGKTtll.rrlleqldeeakaee..........erpevvfvtlpsst.....sskdllrellralglelka................... 70 
                  +++++++G+GKT ++  ++l+ l+++ ++++          + + +        +       k l++e++r+lg +l                     
  CDO68689.1 286 NMLICAPTGAGKTDVAmLTVLRVLNQHRSHNDnsgniaatieR-DNF--------KiiyvaPMKALASEIVRKLGKRLQWlsirvreltgdmqltkkei 375
                 689**********655155555566666666665566666532.222........23333344566666666666555556677888888877777765 PP

      AAA_22  71 erlsseellealeqalrarav........ielliiDEaqhlr..seealeeL..rslln 117
                 ++ +        ++ + ++ +        ++lliiDE++ l+  + +++e++  r+l  
  CDO68689.1 376 AETQIIVTTPEKWDVVTRKPTgegelaskVKLLIIDEVHLLNddRGAVIETIvaRTLRQ 434
                 3333333335566666666668888888899**********987699999996555555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
      AAA_22    4 tagilvvtGesGtGKTtllr 23  
                  t+ ++++++++ +GK++l +
  CDO68689.1 1158 TRVHTLLCAPTACGKSVLGQ 1177
                  67799***********9865 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.8e-05     0.036      47     199 ..     276     426 ..     269     444 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                 ..HHHHHTT--EEE---TTS--H....HHHHHHHH...HHTTTS---........S-EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH----- CS
                 xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  47 esaeakqsvrGGiLaDemGLGKT....vqvlalilaqrakeekdkek.krkdtlagptLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkn 139
                 ++++a+qs+ + +++  +G+GKT    ++vl ++ ++r+++++  +   + ++  + ++ v+P+ +l+ + ++++ + ++  ++rv   +g+       
  CDO68689.1 276 VYPTAYQSNENMLICAPTGAGKTdvamLTVLRVLNQHRSHNDNSGNIaATIERDNFKIIYVAPMkALASEIVRKLGKRLQWLSIRVRELTGDM------ 368
                 68999******************9888888888888888776666556777888888999****99999999999999999999999999963...... PP

                 ------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 140 tkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaea 199
                  ++ +k  a++++++tt ++   ++  ++   +l   + k +++DE h l+     + e+
  CDO68689.1 369 -QLTKKEIAETQIIVTTPEKWDVVTRKPTGEGELA-SKVKLLIIDEVHLLNDDRGAVIET 426
                 .34677899999*****999997775556666665.57899*******999876555544 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.2e-05      0.16       6      79 ..     503     586 ..     501     612 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.2e-05
  Glyco_transf_4   6 rhvleLaraLarrGheVtvvtpgddgpleeev.........elvvrvprvplpllkrllrslaflr.rlrrllkrekpDvvHah 79 
                     r+++e + +L r Gh+V v+++++++    ++           + ++ +  +p ++ ++r+++ +r + +r+l  +++ + Ha 
      CDO68689.1 503 RVTYEKVAELVREGHQVMVFVHARKETVKAAEaikesahadGALDDFSCSEHPQYEFFRRDISQSRnKEMRQLFDHGFGIHHAG 586
                     7999****************9888888888777899999998888899999999999999887765256777888888887775 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00029      0.58      13      76 ..     280     352 ..     275     365 .. 0.77
   2 ?   -0.6   0.0      0.45   9.1e+02     185     225 ..     365     412 ..     348     413 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00029
      AAA_11  13 alseseitliqGPPGtgKT.ktivellsqllsr.....rk...seeeksakpriLvCapSNaAvDellerllr 76 
                 a++++e  li  P G gKT  + + +l++l+++     ++    ++ ++ + +i + ap  a   e++ +l +
  CDO68689.1 280 AYQSNENMLICAPTGAGKTdVAMLTVLRVLNQHrshndNSgniAATIERDNFKIIYVAPMKALASEIVRKLGK 352
                 77888889***********855666666666554445511566788999999***************999977 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
      AAA_11 185 eesle..eevldeaeivltTlsgagsklleklak......kfdvviIDE 225
                 +  ++  ++ + e++i++tT  + +  + +  ++      k++++iIDE
  CDO68689.1 365 TGDMQltKKEIAETQIIVTTPEKWDVVTRK-PTGegelasKVKLLIIDE 412
                 4444444999999******98877433332.222355555899999998 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00017      0.33       9     127 ..     283     429 ..     277     446 .. 0.66
   2 ?   -3.1   0.0       4.5     9e+03      28      63 ..     506     541 ..     503     601 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkp..............eeillvaftgrAakelrerlaalgae...............atTiHrlall 78 
                 +++++l+ a+ G GKT v +  v  ++++++ +                +i+ va+ +  a+e+  +l   g++                 T  ++a+ 
  CDO68689.1 283 SNENMLICAPTGAGKTDVAMLTVLRVLNQHRSHNdnsgniaatierdnFKIIYVAPMKALASEIVRKL---GKRlqwlsirvreltgdmQLTKKEIAET 378
                 6789*************977665555444444445889999999999999999999999999988877...4444456655555555552333333221 PP

      AAA_19  79 dfddlltealelle...........eaeeekklqeee.llivDEfqdvdelqyrLlkallg 127
                 +          ++            + + e +l ++  lli+DE+  +++   +++++++ 
  CDO68689.1 379 Q----------IIVttpekwdvvtrKPTGEGELASKVkLLIIDEVHLLNDDRGAVIETIVA 429
                 1..........11133333444444344455555666699999999988888777777764 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.5
      AAA_19  28 khivallvelggvkpeeillvaftgrAakelrerla 63 
                  ++va+lv++g++ +  + +   t +Aa+ ++e+ +
  CDO68689.1 506 YEKVAELVREGHQVMVFVHARKETVKAAEAIKESAH 541
                 556667777766555555555667888888888763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 9946.14
//
Query:       CDO68690.1  [L=506]
Description: hypothetical protein BN946_scf184652.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-31  109.6  26.4    4.4e-21   75.0   7.7    3.3  4  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
       0.13   11.5   0.1       0.13   11.5   0.1    2.0  2  SLATT_5          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   7.7   4.9e-25   4.4e-21       4     137 ..      98     257 ..      96     278 .. 0.92
   2 !   20.2   2.1   2.2e-08    0.0002     153     241 ..     292     378 ..     283     379 .. 0.84
   3 !   28.5   1.1   6.5e-11   5.9e-07     330     387 ..     374     430 ..     353     432 .. 0.85
   4 ?   -4.1   0.2      0.54   4.8e+03      36      52 ..     455     471 ..     446     475 .. 0.60

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 4.9e-25
                      HHHHHHHHHHHHHHHHHHHHTTTS-..........H.HHHHHHHHHHHHHHHH........HTTT-----EEE-GGGHH.HHHGGG-....... CS
  Xan_ur_permease   4 lllglQhllamfaalvvvPllvgdalgl.aeelrqlisatllasGiatllqll........ifgirlpillgssfafvt.almialGsa..... 82 
                      +  glQh lam+a+l+++P+++++al+l +e+++++isa+l+ +Gi +l+q+         ++g++l ++ g+sfa ++ a  i+ +++     
       CDO68690.1  98 VASGLQHALAMLAGLITPPIIFANALNLdSETSAYMISASLIGCGILSLVQMSrlrlfgnyYLGTGLISVVGTSFATLStANAIFNAMYadgtc 191
                      568***********************99888888******************999***********************9866666666688889 PP

                      ..............HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHH CS
  Xan_ur_permease  83 ............edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaq 137
                                      +a++++lg+ l+ ++l il+s++  r  l r++pP+vtg+v+++iG sl+ 
       CDO68690.1 192 pstvapdgtvtrGPCPDAYGMVLGTSLICSFLEILLSFVPAR-VLKRVFPPMVTGTVIVMIGASLIG 257
                      *********9998899*************************8.*********************985 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.2e-08
                      .B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH. CS
  Xan_ur_permease 153 ltvvslkllllavvvllvilllsvflkglfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlava 241
                      l+ +s+++++l++   ++i+l   f +++++++++ +g+++g+++a ++g ++ s+ +++ap +++    + ++  + +++il +lav+
       CDO68690.1 292 LPWGSPEFIGLGFLSFVTIILTELFGSPFLKNISVIVGLAVGCIVAGATGYIDGSS-IKTAPAITFLWV-HTFKIRVYAPAILPMLAVY 378
                      567889999***********************************************.999999887533.3333336677888887775 PP

  == domain 3  score: 28.5 bits;  conditional E-value: 6.5e-11
                      HHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 330 allssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnllivavslvlGlgvatvp 387
                       l+  +P pvlgGv++ +f+++a sgv+ l+ ++++ +r  +++a +  +G+g   vp
       CDO68690.1 374 MLAVYVPNPVLGGVTTFLFASVATSGVRVLSYNRFT-RRDRFVLAAAFSFGIGDLLVP 430
                      57789*******************************.999999999999999987776 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 0.54
                      ..H.HHHHHHHHHHHHH CS
  Xan_ur_permease  36 rqlisatllasGiatll 52 
                      + + s+ +l+sG+++++
       CDO68690.1 455 TIVLSTPFLVSGLVAVV 471
                      44556666666666554 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.8      0.15   1.3e+03      36      72 ..     130     167 ..     124     183 .. 0.74
   2 ?   11.5   0.1   1.5e-05      0.13      14      82 ..     396     469 ..     393     476 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.15
     SLATT_5  36 slsllSvylivlslls.nkssestinenlldflsiilS 72 
                 s  ++S++li   +ls ++ s     +n++  +++i  
  CDO68690.1 130 SAYMISASLIGCGILSlVQMSRLRLFGNYYLGTGLISV 167
                 55689999999999999999999999888877776543 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.5e-05
     SLATT_5  14 vTkkaRfnAaeRlrrknklstfslsllSvylivlslls.....nkssestinenlldflsiilSilvlvislle 82 
                  T+++R   + R+ r++++++ + + +++  ++++ +        s+ ++  + l+d ++i+lS   lv +l++
  CDO68690.1 396 ATSGVRVLSYNRFTRRDRFVLAAAFSFGIGDLLVPTIFthlfdGVSHPNKGLQGLFDSITIVLSTPFLVSGLVA 469
                 59**************************9977766544466557888899999****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 2821.43
//
Query:       CDO68691.1  [L=306]
Description: hypothetical protein BN946_scf184652.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.4   1.9       0.22   11.7   1.9    1.3  1  DUF4870   Domain of unknown function (DUF4870)
       0.21   11.3   2.9       0.36   10.5   2.9    1.3  1  DUF2512   Protein of unknown function (DUF2512)


Domain annotation for each model (and alignments):
>> DUF4870  Domain of unknown function (DUF4870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.9   2.4e-05      0.22      37      91 ..     229     281 ..     221     296 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
     DUF4870  37 sefvdeqgkealNFqislliysiilivlsllvligflllllllllllnlvlviia 91 
                  ++++e+ k+al F +++ + + ++++l +l l  +    +++ +++++ + i+ 
  CDO68691.1 229 RAIIAEETKNALLFALTVAFGAYVAWCLLVLPLAAL--TSTIFQGICAVLVLIYE 281
                 46899**********************988888877..33333333333333333 PP

>> DUF2512  Protein of unknown function (DUF2512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.9     4e-05      0.36      29      94 ..     235     300 ..     223     303 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4e-05
     DUF2512  29 sfsevllisllltlvsYlvgDlliLprtgnliAtiaDfglafvvvWlltavlldnsvsiaiaslls 94 
                   ++ ll++l +++ +Y++  ll+Lp  + ++ +   +  ++v+++   +  + +  ++ +a+ +s
  CDO68691.1 235 ETKNALLFALTVAFGAYVAWCLLVLPLAALTSTIFQGICAVLVLIYEAFRSSILAIGQMCWAACIS 300
                 567899*******************************************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1922.84
//
Query:       CDO68692.1  [L=239]
Description: hypothetical protein BN946_scf184652.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-37  127.0   0.0    7.3e-37  126.7   0.0    1.1  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   4.1e-41   7.3e-37      42     169 ..       9     169 ..       1     170 [. 0.94

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 4.1e-41
  EMC3_TMCO1  42 kkmekeqkrekelqkrarelqk..ngdklklkklekrqeelmedqsem.............................mmdqmkpmivtmipqiliffwl 109
                 kkm +   re++ + r++ l+    ++ l++   ++ +++l ++  ++                             mm  mk ++v+m+pq++i++w+
  CDO68692.1   9 KKMPRKAIREQRALVRSQILRAtsANSPLPPSYYKAISQYLSQAFADGtylkdgppkadapasappnpltdpgamegMMAGMKTQMVMMVPQMIIMGWI 107
                 6699999999999999998887668999*********************************************************************** PP

  EMC3_TMCO1 110 nsffsgfvvaklpfpltgrfksllqrgl..esldvrfvssiswYflcsfglsqiirklLgea 169
                 n+ff+gfv+ klpfplt  fks+lqrg+   + dvr+vss+swYfl+ fgl++++r++Lg +
  CDO68692.1 108 NFFFQGFVLIKLPFPLTLGFKSMLQRGVetPDMDVRWVSSLSWYFLNFFGLNGLYRLILGGE 169
                 ***********************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1653.64
//
Query:       CDO68693.1  [L=179]
Description: hypothetical protein BN946_scf184652.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-27   94.0   3.9    4.1e-18   65.6   1.3    2.3  2  EF-hand_7     EF-hand domain pair
    4.7e-24   82.1  11.0    2.5e-08   32.9   0.2    4.4  4  EF-hand_1     EF hand
    2.2e-20   70.8   6.8    1.5e-06   27.7   0.1    4.4  4  EF-hand_6     EF-hand domain
    1.7e-13   50.2  10.2    5.2e-06   26.2   0.8    3.6  3  EF-hand_8     EF-hand domain pair
    4.7e-13   48.0   9.4    0.00037   19.8   0.1    4.3  4  EF-hand_5     EF hand
    1.2e-05   25.2   4.9      0.083   12.8   0.1    3.6  4  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    0.00027   21.2   1.9       0.24   11.7   0.3    3.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0033   17.7   1.6        0.1   12.9   0.1    2.8  3  EF-hand_9     EF-hand domain
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.053   14.0   0.0    1.9  2  EF-hand_3     EF-hand
      0.051   13.6   0.1      0.097   12.6   0.1    1.4  1  Pan3_PK       Pan3 Pseudokinase domain
      0.075   13.0   2.0        8.5    6.3   0.0    3.1  3  Caleosin      Caleosin related protein
       0.22   11.5   0.0       0.35   10.8   0.0    1.3  1  DUF1298       Protein of unknown function (DUF1298)


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   8.5e-10   1.3e-06      16      69 ..      29      77 ..      28      79 .. 0.85
   2 !   65.6   1.3   2.8e-21   4.1e-18       1      68 [.      87     160 ..      87     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 8.5e-10
   EF-hand_7 16 dgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                +g ldk+e+ r+++++f     g++   e  +++f+ fD +k+G+i+f EF  +
  CDO68693.1 29 SGQLDKTEFSRIYKQFF---PFGDP--GEFADYVFNVFDENKNGTIDFKEFICA 77
                699************98...44444..45567*******************976 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 2.8e-21
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee......lellfkefDtdkdGvisfdEFlk 68 
                 +eklk+aF+++D dgdg+++++e+l+++++i+ ++g ++kl+ +e      ++++f+++D dkd ++++dEF++
  CDO68693.1  87 DEKLKWAFQLYDIDGDGFITYDEMLKIVQSIYKMTGQMVKLPVDEdtpekrVDKIFRNMDRDKDAKLTYDEFVE 160
                 58*********************999*********5555555555555556*********************87 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.049        73      14      27 ..      29      42 ..      29      44 .. 0.87
   2 !   27.4   0.3   9.5e-10   1.4e-06       3      27 ..      55      79 ..      53      81 .. 0.90
   3 !   32.9   0.2   1.7e-11   2.5e-08       2      28 ..      90     116 ..      89     117 .. 0.93
   4 !   23.6   0.5   1.6e-08   2.4e-05       2      25 ..     138     161 ..     137     164 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.049
                SSEEEHHHHHHHHH CS
   EF-hand_1 14 dGkIdfeEfkellk 27
                +G++d+ Ef ++ k
  CDO68693.1 29 SGQLDKTEFSRIYK 42
                7********99877 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 9.5e-10
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                + +F++fD +++G+Idf+Ef+ +l+
  CDO68693.1 55 DYVFNVFDENKNGTIDFKEFICALS 79
                679*****************99885 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 1.7e-11
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 lk++F+++D DgdG+I+++E+++++++
  CDO68693.1  90 LKWAFQLYDIDGDGFITYDEMLKIVQS 116
                 89********************99976 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 +++iFr +D+D+d k++++Ef+e 
  CDO68693.1 138 VDKIFRNMDRDKDAKLTYDEFVEG 161
                 79*******************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.018        27      14      28 ..      29      43 ..      25      49 .. 0.86
   2 !   27.7   0.1   9.8e-10   1.5e-06       3      27 ..      55      79 ..      53      86 .. 0.92
   3 !   23.4   0.1   2.3e-08   3.4e-05       5      27 ..      93     115 ..      93     122 .. 0.92
   4 !   15.4   0.3   8.5e-06     0.013       2      23 ..     138     159 ..     137     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.018
   EF-hand_6 14 dGkidaeElrkalrk 28
                +G++d+ E+ +++++
  CDO68693.1 29 SGQLDKTEFSRIYKQ 43
                8********999985 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 9.8e-10
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                +++F+ fD +++G+id++E++ al+
  CDO68693.1 55 DYVFNVFDENKNGTIDFKEFICALS 79
                589********************98 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 2.3e-08
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 aF+l+D dgdG+i+++E+ k+ +
  CDO68693.1  93 AFQLYDIDGDGFITYDEMLKIVQ 115
                 7******************9976 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 8.5e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 ++++F+ +D+d+d k++++E++
  CDO68693.1 138 VDKIFRNMDRDKDAKLTYDEFV 159
                 5799*****************7 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.8   3.5e-09   5.2e-06       1      49 [.      28      75 ..      28      79 .. 0.86
   2 !   10.8   0.2   0.00022      0.33      26      49 ..      88     111 ..      86     116 .. 0.85
   3 !   23.8   1.6     2e-08     3e-05       2      50 ..     102     160 ..     101     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.5e-09
   EF-hand_8  1 ekgkItreelrrilrilglkk...glseee.vdilfrefDtdgdGkisfeEFc 49
                ++g+++++e++ri++     +      + e +d +f+ fD++++G+i+f+EF+
  CDO68693.1 28 PSGQLDKTEFSRIYK-----QffpFGDPGEfADYVFNVFDENKNGTIDFKEFI 75
                689*********993.....33434678999*********************7 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00022
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFc 49 
                 e++ + f + D+dgdG i+++E +
  CDO68693.1  88 EKLKWAFQLYDIDGDGFITYDEML 111
                 66788999**************76 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 2e-08
   EF-hand_8   2 kgkItreelrril.rilglkk.........glseeevdilfrefDtdgdGkisfeEFcv 50 
                 +g It +e+ +i+ +i ++ +         ++ e+ vd +fr +D+d+d k++++EF++
  CDO68693.1 102 DGFITYDEMLKIVqSIYKMTGqmvklpvdeDTPEKRVDKIFRNMDRDKDAKLTYDEFVE 160
                 89***********777776667999****9999999*********************96 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.036        54      13      24 ..      29      40 ..      29      41 .. 0.88
   2 !   19.0   0.4   4.7e-07   0.00071       3      21 ..      55      74 ..      53      76 .. 0.91
   3 !   19.8   0.1   2.5e-07   0.00037       4      23 ..      93     112 ..      90     114 .. 0.87
   4 !    8.9   0.3   0.00072       1.1       2      21 ..     139     158 ..     138     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.036
                SSCE-HHHHHHH CS
   EF-hand_5 13 DGkIskeELktl 24
                +G+++k E+ ++
  CDO68693.1 29 SGQLDKTEFSRI 40
                7********885 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.7e-07
                H.HHHHH-SS-SSCE-HHHH CS
   EF-hand_5  3 d.tFqaiDlNgDGkIskeEL 21
                d +F+ +D N+ G+I++ E+
  CDO68693.1 55 DyVFNVFDENKNGTIDFKEF 74
                669****************9 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 2.5e-07
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +Fq  D +gDG+I+ +E  +
  CDO68693.1  93 AFQLYDIDGDGFITYDEMLK 112
                 5****************876 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00072
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 ++ F+ +D ++D k++ +E+
  CDO68693.1 139 DKIFRNMDRDKDAKLTYDEF 158
                 568*********99999999 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   2.3e+03      48      66 ..      21      38 ..       3      46 .. 0.48
   2 !    6.1   0.1    0.0068        10      48      71 ..      57      80 ..      51      83 .. 0.85
   3 !   12.8   0.1   5.6e-05     0.083      42      81 ..      87     126 ..      78     140 .. 0.79
   4 !    7.5   0.2    0.0025       3.8      41      66 ..     134     159 ..     123     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
   EF-hand_4 48 iwdladidedgkldfeefc 66
                   l d    g+ld  ef 
  CDO68693.1 21 YCFLKDCP-SGQLDKTEFS 38
                33344443.3666666665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0068
   EF-hand_4 48 iwdladidedgkldfeefciamrl 71
                ++++ d +++g++df+ef+ a+ +
  CDO68693.1 57 VFNVFDENKNGTIDFKEFICALSV 80
                778889999*********999865 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 5.6e-05
   EF-hand_4  42 edklekiwdladidedgkldfeefciamrlifdlvngeik 81 
                 ++kl+  ++l did dg + ++e+  +++ i+ +  + +k
  CDO68693.1  87 DEKLKWAFQLYDIDGDGFITYDEMLKIVQSIYKMTGQMVK 126
                 5789999*********************999998765443 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0025
   EF-hand_4  41 eedklekiwdladidedgkldfeefc 66 
                 +e++++ki+   d d+d kl ++ef+
  CDO68693.1 134 PEKRVDKIFRNMDRDKDAKLTYDEFV 159
                 578899*******************7 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.026        38      69     111 ..      30      75 ..       3      77 .. 0.72
   2 !   11.7   0.3   0.00016      0.24      52     111 ..      86     159 ..      79     161 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.026
  SPARC_Ca_bdg  69 kvlsksELaplraplvkle...hCikpflescDadkdkkislkEwc 111
                   + l+k+E + +++++ ++    +  +  ++  D +k+++i+ kE++
    CDO68693.1  30 GQLDKTEFSRIYKQFFPFGdpgEFADYVFNVFDENKNGTIDFKEFI 75 
                   5677777777777777664111346677899999999999999985 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00016
  SPARC_Ca_bdg  52 ckepvawkFsklDtnsdkvlsksELaplraplvkl..............ehCikpflescDadkdkkislkEwc 111
                     e+++w F+  D + d++++  E+ ++ +++ k+              e+ +++ +++ D dkd k++  E++
    CDO68693.1  86 LDEKLKWAFQLYDIDGDGFITYDEMLKIVQSIYKMtgqmvklpvdedtpEKRVDKIFRNMDRDKDAKLTYDEFV 159
                   56899*******************99988877665333333333333335666677777777777777777765 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.4   5.1e+03      43      59 ..       7      22 ..       5      26 .. 0.77
   2 !   12.9   0.1     7e-05       0.1       2      63 ..      56     115 ..      55     118 .. 0.85
   3 ?    5.2   0.3     0.018        28       4      58 ..      94     158 ..      91     161 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.4
   EF-hand_9 43 elDPdgedasvdldtfl 59
                +l P+   a ++++t++
  CDO68693.1  7 KLSPEQL-ADLQKNTYC 22
                5668888.888999998 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7e-05
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  vF+v+D +k G++  ++ i  L  +  +   + +L    +++D dg  + +  d  l++++
  CDO68693.1  56 YVFNVFDENKNGTIDFKEFICALSVTS-RGRLDEKLKWAFQLYDIDGD-GFITYDEMLKIVQ 115
                 68*********************7655.59999999999999999998.8888888777765 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.018
   EF-hand_9   4 FevcDtqktGrVp...vsrlidyLravtaq........dpeeseLeelakelDPdgedasvdldtf 58 
                 F+++D++  G ++   + ++++   ++t+q        d++e ++++  +++D d   a++  d f
  CDO68693.1  94 FQLYDIDGDGFITydeMLKIVQSIYKMTGQmvklpvdeDTPEKRVDKIFRNMDRDKD-AKLTYDEF 158
                 888888888888722233444434444555466666668889999999999997766.99999988 PP

>> EF-hand_3  EF-hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   1.9e+03      49      75 ..      53      78 ..      35      81 .. 0.73
   2 ?   14.0   0.0   3.5e-05     0.053       1      86 [.      86     173 ..      86     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
   EF-hand_3 49 vepsvrscFeqvsskkkielehflewl 75
                + ++v ++F++ +++ +i+ ++f+  l
  CDO68693.1 53 FADYVFNVFDE-NKNGTIDFKEFICAL 78
                55677777777.477788888887655 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.5e-05
   EF-hand_3   1 ledKyrylFsli.sdseglldqkklgllLeellqvprqvgEsaaFggsnvepsvrscFeqvs..skkkielehflewlksePqslvWLp 86 
                 l++K+++ F+l+  d +g+++  ++ ++++ + +++ q+   ++      e+ v ++F+++   +++k++  +f+e  k++P ++  L+
  CDO68693.1  86 LDEKLKWAFQLYdIDGDGFITYDEMLKIVQSIYKMTGQMVKLPVDED-TPEKRVDKIFRNMDrdKDAKLTYDEFVEGSKQDPTIVQALS 173
                 79*********966999***********************9999777.89*********9985567788889**********9876666 PP

>> Pan3_PK  Pan3 Pseudokinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.5e-05     0.097      73     136 ..      53     119 ..      52     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
     Pan3_PK  73 FrdyvFhqvdeegkpvldlahvlscLn.....klDagveekilLvsrdeqsvlvvsYkelkkllesafe 136
                 F dyvF+  de+ + ++d++  + +L+     +lD   +   +L   d +   +++Y e+ k+++s ++
  CDO68693.1  53 FADYVFNVFDENKNGTIDFKEFICALSvtsrgRLDEKLKWAFQLYDIDGDG--FITYDEMLKIVQSIYK 119
                 99********************99998222224454455555666666654..5789999999988876 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.25   3.7e+02      12      27 ..      60      75 ..      52      86 .. 0.77
   2 ?    3.2   0.1      0.05        75      10      28 ..      94     112 ..      86     125 .. 0.66
   3 ?    6.3   0.0    0.0057       8.5      93     125 ..     136     168 ..     132     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.25
    Caleosin 12 FfDrdkdGiiypldty 27
                 fD++k+G+i + + +
  CDO68693.1 60 VFDENKNGTIDFKEFI 75
                5888888888877765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.05
    Caleosin  10 vaFfDrdkdGiiypldtyr 28 
                 ++ +D d dG+i+  ++ +
  CDO68693.1  94 FQLYDIDGDGFITYDEMLK 112
                 4567777777777766544 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0057
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqrea 125
                 ++ ++if++ +++k+ +lt++e++e  k++ ++
  CDO68693.1 136 KRVDKIFRNMDRDKDAKLTYDEFVEGSKQDPTI 168
                 6899*******************9988776655 PP

>> DUF1298  Protein of unknown function (DUF1298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00023      0.35       8      35 ..     123     150 ..     119     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
     DUF1298   8 vllpLpidladPlerlrkakkamdrkKr 35 
                  +++Lp+d + P +r+ k+ ++mdr K 
  CDO68693.1 123 QMVKLPVDEDTPEKRVDKIFRNMDRDKD 150
                 589**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1311.54
//
Query:       CDO68694.1  [L=414]
Description: hypothetical protein BN946_scf184652.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2744.19
//
Query:       CDO68695.1  [L=510]
Description: hypothetical protein BN946_scf184652.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00013   22.7   0.1      0.067   14.1   0.0    3.1  3  WD40         WD domain, G-beta repeat
    0.00027   21.2   0.0          1    9.7   0.0    2.6  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.01   15.0   0.0      0.019   14.0   0.0    1.4  1  DUF1513      Protein of unknown function (DUF1513)
      0.049   12.8   0.0      0.072   12.2   0.0    1.1  1  DUF839       Bacterial protein of unknown function (DUF839)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.7   1.2e+04      13      27 ..      16      30 ..       6      33 .. 0.62
   2 !   14.1   0.0   1.5e-05     0.067       3      38 .]     202     239 ..     200     239 .. 0.85
   3 !    5.2   0.0    0.0099        44       2      37 ..     244     282 ..     243     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
                EEEEEEETTSSEEEE CS
        WD40 13 vtslafspdgawlas 27
                + + +f+pd + +++
  CDO68695.1 16 IFDARFDPDCRIFTT 30
                455568888877765 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.5e-05
                 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 ++ ++ +H s  + l+++p+g++la ++s+   +riWd
  CDO68695.1 202 PVSIIAAHqSALSTLSVPPSGKLLAtTSSRGTLIRIWD 239
                 566777997779************955689*******9 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0099
                 EEEEEEE.SS.SS.EEEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40   2 qclrtlt.GH.ss.vtslafspdgawlasG.sdDgtvriW 37 
                 +++r+l+ G  +  ++++af pd + + +  sd+gtv+++
  CDO68695.1 244 KLVRELRrGAdKAeIYGVAFRPDEREV-CVwSDKGTVHVF 282
                 67788755886447************7.35899****997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00022         1      37      81 ..     209     254 ..     203     256 .. 0.86
   2 !    9.5   0.0   0.00026       1.2      36      75 ..     253     292 ..     250     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00022
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdge.vrlldaesgkvvhslsvkse 81 
                  ++s  + L+  p+gklLa   s g+ +r+ d  +gk+v++l+ +++
   CDO68695.1 209 HQSALSTLSVPPSGKLLATTSSRGTlIRIWDTTTGKLVRELRRGAD 254
                  67778889999************9548***********99887665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00026
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +++ e+ ++a++pd++  +v  ++g+v++++  sg+  ++
   CDO68695.1 253 ADKAEIYGVAFRPDEREVCVWSDKGTVHVFSLTSGTGASN 292
                  57899***************************99986665 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.3e-06     0.019     225     279 ..     219     291 ..     209     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.3e-06
     DUF1513 225 dsegrlvavtsPrgnlvavwdlasgellee....aaladaagvaaaksg..............flvssGqgkl 279
                   +g+l+a+ts rg l+ +wd+++g+l++e    a  a+++gva ++++              f ++sG+g+ 
  CDO68695.1 219 PPSGKLLATTSSRGTLIRIWDTTTGKLVRElrrgADKAEIYGVAFRPDErevcvwsdkgtvhvFSLTSGTGAS 291
                 56899********************998762222567899****99999997655555555555555555554 PP

>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05     0.072     460     518 ..     213     272 ..     205     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
      DUF839 460 dellgvtaeGkvynlarndGnnvltsdaargevkrfl.tepegsEvtGvtfsPdgktlfv 518
                  ++l v ++Gk+ + ++ +G+++   d ++g++ r l ++++++E+ Gv+f Pd++ + v
  CDO68695.1 213 LSTLSVPPSGKLLATTSSRGTLIRIWDTTTGKLVRELrRGADKAEIYGVAFRPDEREVCV 272
                 44788999************************98887799**************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 2943.56
//
Query:       CDO68696.1  [L=1652]
Description: hypothetical protein BN946_scf184652.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-29  100.6   0.2      2e-28   99.6   0.2    1.5  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.2   1.1e-32     2e-28      45     317 ..     400     715 ..     366     723 .. 0.76

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 1.1e-32
     Plavaka  45 elwfrdplevikellgnpdfadeldyaPereyt...dekkg.ervysemmtgdwaweqq..ieek.p.....tegatlvpvilssDKTtlsvftgnkea 131
                  +w++     i++ l+    a+++++ P+   +    ++++ erv  e++t d   +    + ++ p     +    ++ ++++sD T++ +f g+ ++
  CDO68696.1 400 GFWHKSLCMEIRHTLSLDPSAKDFVFDPYVTERrvpGSAERvERVHGELYTSDAFVQEDlrL-QNaPpepgcELPRAIAALMFWSDATQVAQF-GQAKV 496
                 5677777777777777777788888888544442224444459***********99999553.333322233346789***************.***** PP

     Plavaka 132 yPvYlsiGnipkevrrkasrnavvllayLpi.........pklkki...kkskefrklfkrqlfHaclaril.epLkeagkkgvvmtcadghvrrvipi 217
                 +P Yl  Gn +k  r +++ +a   +ay p              ++   + s++   +++r+lfH + + +l e   +a ++g+++ c dg+ rr++p 
  CDO68696.1 497 WPNYLYYGNQSKYERARPTAHAAHHVAYFPSlpddvhdfiR---HHtgkTPSPQLLAHCRRELFHGAWNCLLdEEFLHACEHGMIVDCMDGVRRRIYPR 592
                 ******************************98888864441...442213467777789************94568999******************** PP

     Plavaka 218 laayiaDypEqvlvacivqg...wCpkctakkkel...gdlee.....selrtreetlelleeaade.............lkklwkeyglkgviepFwe 292
                 +  y aDypE+vl+a i+ +    Cp+c ++ +++   g++e+     s++r+ ++++++  e+a++              ++ ++   l+++ + F  
  CDO68696.1 593 VFTYSADYPEKVLIATIRDKgrcPCPRCLVTFEDVpnvGEEEDddariSQRRCPTDARHQAVETARGliysdgyvvnsdrVESILQPESLVPTENVF-G 690
                 *****************766544678*****998843333211122223445544444444444333888889999888888899999999988777.6 PP

     Plavaka 293 dlpradihelltpDlLHqlikgvfk 317
                 +l+  d h++l  DlLH+   gv+k
  CDO68696.1 691 KLKSLDYHQMLVVDLLHEYELGVWK 715
                 79*****************999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 10551.72
//
Query:       CDO68697.1  [L=157]
Description: hypothetical protein BN946_scf184652.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1122.36
//
Query:       CDO68698.1  [L=643]
Description: hypothetical protein BN946_scf184652.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-41  141.3   1.0    2.5e-25   89.6   0.1    2.4  2  ATE_C          Arginine-tRNA-protein transferase, C terminus
    4.2e-19   68.7   1.6    7.5e-19   67.9   1.6    1.4  1  ATE_N          Arginine-tRNA-protein transferase, N terminus
    1.8e-07   31.0   0.0    5.2e-07   29.5   0.0    1.8  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> ATE_C  Arginine-tRNA-protein transferase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   4.2e-29   2.5e-25       1      92 [.     138     234 ..     138     236 .. 0.92
   2 !   50.1   0.1     7e-17   4.2e-13      91     133 ..     251     299 ..     240     300 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 4.2e-29
       ATE_C   1 ekfeLykkYqkavhgdkeeksseesfarflvdsplseeei.......sakekklgsyhqeyrldgkLvavgvvDvlpeglSsvYffydpdyaklslGkl 92 
                 ekf+Lyk+Yqk++h+++++  + +sf+rflv+spl  ++i        +  +++gsyhq yrldg+L+avgv+D+lp+++SsvYf+y+++++++slGk 
  CDO68698.1 138 EKFALYKSYQKEIHHEDDK--APSSFKRFLVQSPLIPQRIeypserpFHLPENYGSYHQLYRLDGELIAVGVIDILPHCVSSVYFMYEKKWDRFSLGKA 234
                 79************76554..6678**********999999999988788899********************************************97 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 7e-17
       ATE_C  91 klsiLreielare......lglkyyylGYyiescpkmrYKaeykpsell 133
                 +ls+Lre +lare      +g++y+y+G+yi+scpkmrYK++y+ps+l 
  CDO68698.1 251 QLSALREASLAREiheagvPGMQYLYMGFYIHSCPKMRYKGDYAPSYLA 299
                 6899********9999999***************************986 PP

>> ATE_N  Arginine-tRNA-protein transferase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   1.6   1.3e-22   7.5e-19      39      81 .]       1      43 [.       1      43 [. 0.98

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.3e-22
       ATE_N 39 lldrGfRRsGkylYkpdckrtCcpqytiRldveefkpsksqkr 81
                ++drG+RRsG+y+Ykpd+kr+Ccpqyti+ld+ +fkpsksq++
  CDO68698.1  1 MIDRGWRRSGTYCYKPDLKRSCCPQYTIKLDALQFKPSKSQRK 43
                69****************************************8 PP

>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   8.7e-11   5.2e-07       2      55 ..     568     640 ..     567     642 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 8.7e-11
                    XXSSTTCCTXXTT.....XEEEEECTS.....---TTSEEEEEETTCE.........-EEEEEEEEETTEEEE CS
  Peptidase_S24   2 vpGdSMeptlldG.....dlilVdkfs.....epkrGdivvfrlpgee.........eayiKrviglpgdrvl 55 
                    v+G SM ptl+++     d++l+d fs     +++rGdiv+ +  g           ++++Kr++ lpgd+v+
     CDO68698.1 568 VRGRSMQPTLNPDdsassDIVLFDSFSvkflqQYNRGDIVALNPRGALrsarsptdsKLIVKRIVALPGDTVR 640
                    89*********9833333589999999***************999998999999999*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 4288.59
//
Query:       CDO68699.1  [L=475]
Description: hypothetical protein BN946_scf184652.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-84  283.0  13.5    3.4e-84  282.6  13.5    1.1  1  KCH       Fungal potassium channel
  ------ inclusion threshold ------
      0.086   12.8  10.3       0.11   12.5  10.3    1.1  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> KCH  Fungal potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.6  13.5   3.8e-88   3.4e-84       1     241 [.      16     253 ..      16     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 282.6 bits;  conditional E-value: 3.8e-88
         KCH   1 kfdfidledFksksfltvlkYillwvllllslavyvsDiytavkLLafnkwsneikp...........aipfkiskwiFsgcIilsfvllayeaikair 88 
                 kfdfid+++F+++ ++++lkY++l++ +l+s++vyvsDi+tav++L++++wsn i +           +ipf+i++w+F+gc+++sf+llayea+ka++
  CDO68699.1  16 KFDFIDTREFRDNGCGMRLKYLWLYIGVLISFLVYVSDIFTAVTMLTTTSWSNAIFNscppdqsngcvYIPFSIGRWLFFGCVVFSFLLLAYEAYKAKK 114
                 8*****************************************************9999***************************************** PP

         KCH  89 iirsrniaeaylnnlarrlyslrsYkrFcvfeeitkskkkadkvalfvyfelkswlrllladgPRqviNaltLysvlkaklkekgekkleslsglfeki 187
                 ii+sr+i++a++n++a+++yslrsY++Fc+f++i  s+k++d++a+fv+f++ksw+rll+adgPRq iNaltLy+++ +k++          +g f ++
  CDO68699.1 115 IIQSRDISYAFTNVMANKYYSLRSYDHFCFFNHIAASTKRMDDFAFFVFFTFKSWKRLLFADGPRQSINALTLYAFYLSKED----------DGPFWQL 203
                 ********************************************************************************76..........2345566 PP

         KCH 188 kalaeenleeavilsfmlftvviwvlsilklivavilyipllvkiikkedgsLk 241
                 +++ + +  +++++++++ftv+i++ls+l+li+a i+yipll++i+    g+Lk
  CDO68699.1 204 SKYFDGDILTSALTVSTAFTVFIFLLSLLMLIIAGICYIPLLCHIQ----GNLK 253
                 6778999**************************************9....6665 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  10.3   1.2e-05      0.11     151     212 ..     393     456 ..     293     469 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
       TFIIA 151 aqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqq.lekqqqqqqqqqqqqqqq 212
                 a+ +  +++qq +qq++g+ +q++ +++ +  +q++ + a+ ++  +++qqq+q qqqqqqqqq
  CDO68699.1 393 ASTAPYSQQQQYQQQAHGQYQQEEYPNPYSPgPQHMFQPAQHGHGyDHHQQQYQYQQQQQQQQQ 456
                 3333333333443458888888888877765566655555555553322222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3310.10
//
Query:       CDO68700.1  [L=333]
Description: hypothetical protein BN946_scf184652.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-18   66.6   0.0    7.5e-18   65.1   0.0    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
    2.4e-14   53.2   0.0    6.7e-13   48.5   0.0    2.0  1  Hydrolase_4    Serine aminopeptidase, S33
    7.4e-12   46.3   0.1    1.1e-11   45.8   0.1    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00032   20.4   0.0    0.00079   19.1   0.0    1.6  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.19   11.8   0.0    1.4  1  Thioesterase   Thioesterase domain


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.1e-21   7.5e-18       2     256 ..      59     318 ..      58     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.1e-21
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH...HHHHHCTTSSEE.EEEETHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddld...rildalgddklt.lvGhSmGGmialayaa 92 
                    ++v +hG+pg+ + +     + +La +    ++ +D++G+g S+  p +  d+  +++ + +ld    +l +lg++  + l+G+S+GGm+a+  a 
     CDO68700.1  59 PVVAIHGGPGCTHHYLL--SMTDLATKySIPIVFYDQLGNGNSTHLPGKSEDEGAFWTEQLFLDeldNLLRHLGIEDNYvLLGQSWGGMLAARHAT 152
                    89********9985555..888999999********************998888777755555533388*************************** PP

                    HHGGGEEEEEEESE..CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH............HCHHHCCHHHH CS
  Abhydrolase_1  93 eyperVkalvllga..idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf............pdkskrfpssg 174
                    + p+  k+l+  g+  + p +     ++  a+ + ++ dg++ +++        +d+   +e+  ++   + f            ++  ++f+ ++
     CDO68700.1 153 RQPKGLKRLIIAGSpaSIPLFVKAAKEELVANLPLNARDGIIKKEE-----AGTTDPESESEYKAAA---NAFykhhvcrldpwpAELLQSFEWME 240
                    **************54334444444444455555555566655554.....4444444444444332...22233444445546666666666666 PP

                    HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 175 sdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                     d++  +  ga+++    ++ d+ + l +    +++++ptl++ g++D+ +  +++  ++ l pk+++++++ + H+ ++e+
     CDO68700.1 241 KDPEAHCRSGASGFYVMGSVADYQSILEE---AHKISVPTLLLNGAHDRTTGSHVYPLFK-LVPKVKWFTFAESSHTPHWEE 318
                    66666666666666666666666554444...788*****************88888886.*******************97 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.9e-16   6.7e-13       7     205 ..      60     288 ..      57     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.9e-16
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaq.GfavyalDhrGhGrse......gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllry 97 
                  vv +HG       y   + +La +  + ++ +D+ G G+s          g +   + ++d l+ +++++     e + +llG+S+GG++a+++++r+
   CDO68700.1  60 VVAIHGGPGCTHHYLLSMTDLATKySIPIVFYDQLGNGNSThlpgksEDEGAFWTEQLFLDELDNLLRHLG---IEDNYVLLGQSWGGMLAARHATRQ 154
                  8999************99999865489**************998777677777788999999999998888...666899****************** PP

  Hydrolase_4  98 pdkvaglilsaPalkikakl.............kappllklllkllgkllpklqv..........................snnlkadslsrdpevva 156
                  p+ +++li++++  +i+  +             +              +     +                          +   +  +  +  +  +
   CDO68700.1 155 PKGLKRLIIAGSPASIPLFVkaakeelvanlplN----------ARDGI-----IkkeeagttdpeseseykaaanafykhHVCRLDPWPAELLQSFE 237
                  **********999999866543332222222220..........22222.....24455577777777777777766666544566778888889999 PP

  Hydrolase_4 157 ayeadplv..hgkitvrlllelldamkrleeraakitlPllllhGeaDkvv 205
                   +e+dp    + + +   +++ +   ++++e+a+ki++P+lll G++D+ +
   CDO68700.1 238 WMEKDPEAhcRSGASGFYVMGSVADYQSILEEAHKISVPTLLLNGAHDRTT 288
                  9999998732555555666788888999********************976 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   2.9e-15   1.1e-11       1     218 [.      60     323 ..      60     325 .. 0.57

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.9e-15
                    EEEE--GC.....G.CHHHHHHHHCCT.CEEEEE--TTSTS-GGCS.......--HHH...CHHHHHHHCCTT..TTSE.EEEEETCHHHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaag.vhvlapDlpGhGrsdppp.......ldled...ladlaalldelaagggpv.vlvGHSlGGalalaaa 83 
                    v+ +HG+++  +++ l  ++  l+++  + ++ +D  G+G s+  p         +++   l++l++ll++l+    +  vl+G S+GG+la++  
     CDO68700.1  60 VVAIHGGPGCTHHYlL--SMTDLATKYsIPIVFYDQLGNGNSTHLPgksedegAFWTEqlfLDELDNLLRHLG--IEDNyVLLGQSWGGMLAAR-- 149
                    7899**9988888855..666666666755599*******554444333333366666665688899999996..55556**************.. PP

                    HCC.......EEEEES-..----TTTS----TTHHHHHHTT-C.....CCCHCCH..................S-HSCCCCHHH..C....CCCHC CS
  Abhydrolase_6  84 pla.....lvvgvlldppptalpagllaaalelllallallrl.....lawlsre..................plprlfladed..a....daawr 145
                     +a      + ++++++ p + p+   aa  el++ l+ ++r+           e                  ++ ++ ++ ++  a      +w 
     CDO68700.1 150 -HAtrqpkGLKRLIIAGSPASIPLFVKAAKEELVANLPLNARDgiikkE-----EagttdpeseseykaaanaFYKHHVCRLDPwpAellqSFEWM 239
                    .888866633346666666677777755555555555554444222220.....122222222222333224423332222222221222234444 PP

                    HCCCGHH.....HHCCHHC........HTTCCHHTT-TTGCEEE.CTT-C....HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 146 arlarla.....allaglg........llpaaawadlpvpllvl.ggeDp....lvprllerllaqagarlpvvlpgaGHlphleepdeva 218
                    + + ++          g++        +  +++   + vp+l+l g+ D+    +v +l++  l+ +++++  +++ ++H ph ee +++ 
     CDO68700.1 240 EKDPEAHcrsgaS---GFYvmgsvadyQSILEEAHKISVPTLLLnGAHDRttgsHVYPLFK--LV-PKVKW-FTFAESSHTPHWEEREKFM 323
                    4443333322221...111211112112235577777777789899999966555555555..55.*****.************9988875 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.2e-07   0.00079     106     267 ..     138     312 ..     132     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
                    EEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCCCSECTTEEBCCHHHHHHHHHCCCCHHTSSS-STTHHHHHHHH..............HHCH CS
  Peptidase_S15 106 tGiSYlGttqllaaatgvpalkaivpeaaisdlyddyyregGlvrapgglswedldllaealtsrradegdalkaaar..............yeaa 187
                    +G S++G+++   a++++++lk ++++ + ++    +   +  ++a+  l   d  +++e+  + +++++  +kaaa+              +e +
     CDO68700.1 138 LGQSWGGMLAARHATRQPKGLKRLIIAGSPASIPLFVKAAKEELVANLPLNARDGIIKKEEAGTTDPESESEYKAAANafykhhvcrldpwpAELL 233
                    79*******************988887776665544333444444444455556666666666666666666666666688888899999885555 PP

                    CCCCCCTTHHHTHHHHCCCC--SSSHHHHTT-HHHHHCT--S-EEEEEECCSSTTCCHHHHHHHHHCCTT-EEEEECECT CS
  Peptidase_S15 188 sdellaeldrqtpveselletgdydafWkdrnlsedadkvkapvllvgGwnDwnvkngaiklyealkapgvklilgpwtH 267
                    +     e d++  + s ++         + +++ e+a+k+ +p+ll++G +D +   +++ l++ +++ +   ++  ++H
     CDO68700.1 234 QSFEWMEKDPEAHCRSGASGFYVMGSVADYQSILEEAHKISVPTLLLNGAHDRTTGSHVYPLFKLVPKVK-WFTFAESSH 312
                    5554555555556888888889999999************************5555********999987.666666666 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.4e-05      0.19      35     105 ..     102     169 ..      59     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
                   STTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCC CS
  Thioesterase  35 lpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssap 105
                   lpg+++de +  + +   +e+ + lr    e+ y+l G S Gg+lA   Ar+  +q   +k+l++ +s+a+
    CDO68700.1 102 LPGKSEDEGAFWTEQLFLDELDNLLRHLGIEDNYVLLGQSWGGMLA---ARHATRQPKGLKRLIIAGSPAS 169
                   56666666666666666788888999999999*************9...7888889999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2379.41
//
Query:       CDO68701.1  [L=323]
Description: hypothetical protein BN946_scf184652.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-21   75.2   0.0    8.2e-21   74.8   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    2.1e-13   50.1   0.0    7.7e-10   38.4   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    5.1e-12   46.9   0.2    7.6e-12   46.3   0.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.012   15.2   0.0        5.1    6.6   0.0    2.3  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.15   11.1   0.0       0.22   10.5   0.0    1.2  1  DUF1057        Alpha/beta hydrolase of unknown function (DUF1


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   2.3e-24   8.2e-21       2     256 ..      36     308 ..      35     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 2.3e-24
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHH...HHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtas...vaddldrildalgddklt.lvGhSmGGmialayaa 92 
                    ++v +hG+pg+ + ++    + +La +    v+ +D++G+g S+  p++     ++++   + d ld +l +lg++  + l+G+S+GGm+a+  a 
     CDO68701.1  36 PVVAIHGGPGCTHHYIL--SMADLATKySIPVVFYDQLGNGNSTHLPEQS---GEFWTeqlFLDELDNLLCHLGIQDNYvLLGQSWGGMLAARHAT 126
                    89********9997777..666888878*******************963...4444411167777799*************************** PP

                    HHGGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH........................ CS
  Abhydrolase_1  93 eyperVkalvllga.idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf........................ 163
                    + p+  k+l+  g+  + +   + a++  ++++p  ++  ++++++  +  + + + aa++++ + +   ++                        
     CDO68701.1 127 RQPKGLKRLIIAGSpASIPLFVRAAKEELIANLPPDARDAIIKKEEAGTTESESEYKAAVNVFYKRHVCRVDpwpaellqtfewmekdptvhlamh 222
                    **************76777788899999999999999999999999999999999999999998876655559**666666666666666666666 PP

                    ...HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 164 ...pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                        ++  ++ ++ ++++  +a++ ++s++ w+ +d a+++           ptl++ g++D++++ +++ +++ l+pk+++++++ + H+ ++e+
     CDO68701.1 223 vhlCRSPPSRLTHIQYRNGASAFYVVGSLKDWSILDDAHKISL---------PTLLLNGAYDRATDSSVYPFFK-LIPKVKWFTFAESSHTPHWEE 308
                    6665555555666666666666666666666666666666655.........*********************7.*******************97 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.2e-13   7.7e-10       7     159 ..      37     190 ..      34     226 .. 0.73
   2 !    9.7   0.0   0.00013      0.45     183     235 ..     256     305 ..     242     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.2e-13
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaq.GfavyalDhrGhGrse...gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdk 100
                  vv +HG       y   +++La +  + v+ +D+ G G+s     + g++   + ++d l+ ++ ++     + + +llG+S+GG++a+++++r+p+ 
   CDO68701.1  37 VVAIHGGPGCTHHYILSMADLATKySIPVVFYDQLGNGNSThlpEQSGEFWTEQLFLDELDNLLCHLG---IQDNYVLLGQSWGGMLAARHATRQPKG 131
                  8999**********998888876539***************9999999999************98888...566889********************* PP

  Hydrolase_4 101 vaglilsaPalkikaklkappllklllkllgkllpklqv.....snnlkadslsrdpevvaaye 159
                  +++li++++  +i+    ++++++   +l+++l p+ +      ++   ++s s++++ v  + 
   CDO68701.1 132 LKRLIIAGSPASIPLF--VRAAKE---ELIANLPPDARDaiikkEEAGTTESESEYKAAVNVFY 190
                  ******9988887743..333333...3333333333333334433444444444444444444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
  Hydrolase_4 183 leeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                  ++++a+ki+lP+lll G+ D+ +d +    +++ ++  +++  ++++  H  +
   CDO68701.1 256 ILDDAHKISLPTLLLNGAYDRATD-SSVYPFFKLIP--KVKWFTFAESSHTPH 305
                  7899*******************9.44556777776..466666666666665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.2   2.1e-15   7.6e-12       1     217 [.      37     312 ..      37     315 .. 0.54

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.1e-15
                    EEEE--GC.....G.CHHHHHHHHCCT.CEEEEE--TTSTS-GGCS....--HHH...CHHHHHHHCCTT..TTSE.EEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaag.vhvlapDlpGhGrsdppp....ldled...ladlaalldelaagggpv.vlvGHSlGGalalaaapla 86 
                    v+ +HG+++  +++ l  ++a l+++  + v+ +D  G+G s+  p      +++   l++l++ll +l+    +  vl+G S+GG+la++   +a
     CDO68701.1  37 VVAIHGGPGCTHHYiL--SMADLATKYsIPVVFYDQLGNGNSTHLPeqsgEFWTEqlfLDELDNLLCHLG--IQDNyVLLGQSWGGMLAAR---HA 125
                    7899**9988888866..9999899999888*********665555333366655766688899999996..44447**************...88 PP

                    .......EEEEES-..----TTTS----TTHHHHHHTT-C.....CCCHCCH................S-HSCCCCHHHCCCCHCHCCCGHH.... CS
  Abhydrolase_6  87 .....lvvgvlldppptalpagllaaalelllallallrl.....lawlsre................plprlfladedadaawrarlarla.... 152
                          + ++++++ p + p+  +aa  el++ l++ +r+           e                +     ++      ++ ++ a+l+    
     CDO68701.1 126 trqpkGLKRLIIAGSPASIPLFVRAAKEELIANLPPDARDaiikkE-----EagtteseseykaavnvF-----YKRHV--CRVDPWPAELLqtfe 209
                    8866633347777766888888888888888877776666233220.....133333444445333331.....33222..222222222221111 PP

                    ...........................HHCCHHCHTTCCHHTT-TTGC......................EEE.CTT-C....HHHHCHHCCCHST CS
  Abhydrolase_6 153 ...........................allaglgllpaaawadlpvpl......................lvl.ggeDp....lvprllerllaqa 194
                                               +            ++   +++                      l+l g+ D+    +v ++++  l  +
     CDO68701.1 210 wmekdptvhlamhvhlcrsppsrlthiQ------------YRNGASAFyvvgslkdwsilddahkislptLLLnGAYDRatdsSVYPFFK--LI-P 290
                    1111111113333322232222222221............33333333222222222222222222222255564444433334444444..55.8 PP

                    TEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 195 garlpvvlpgaGHlphleepdev 217
                    ++++  +++ ++H ph ee +++
     CDO68701.1 291 KVKW-FTFAESSHTPHWEEREKF 312
                    8888.99*********9888776 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0018       6.6     106     132 ..     112     138 ..     106     145 .. 0.86
   2 ?    6.6   0.0    0.0014       5.1     217     267 ..     253     302 ..     237     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0018
                    EEECHHHHHHHHHCTT--TTEEEEEEE CS
  Peptidase_S15 106 tGiSYlGttqllaaatgvpalkaivpe 132
                    +G S++G+++   a++++++lk ++++
     CDO68701.1 112 LGQSWGGMLAARHATRQPKGLKRLIIA 138
                    79*******************988765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0014
                    TT-HHHHHCT--S-EEEEEECCSSTTCCHHHHHHHHHCCTT-EEEEECECT CS
  Peptidase_S15 217 drnlsedadkvkapvllvgGwnDwnvkngaiklyealkapgvklilgpwtH 267
                    d ++  da+k+  p+ll++G +D     +++ +++ +++ +   ++  ++H
     CDO68701.1 253 DWSILDDAHKISLPTLLLNGAYDRATDSSVYPFFKLIPKVK-WFTFAESSH 302
                    56778899***************666699999999998887.666666666 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.2e-05      0.22      32     125 ..      31     128 ..       5     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.2e-05
     DUF1057  32 gsplGtvvalhGsPG.shnDfkYirskleelkiRligvnyPGfefvtgylgqkytnaeRnsys...kalleelelkgklillghsRGcenaLqlavtl 125
                  s +  vva+hG PG +h  +  + +   +  i ++  +  G  + t  ++q+   +  + +    + ll +l +++  +llg s G+  a   a+  
  CDO68701.1  31 KSGVTPVVAIHGGPGcTHHYILSMADLATKYSIPVVFYDQLGNGNSTHLPEQSGEFWTEQLFLdelDNLLCHLGIQDNYVLLGQSWGGMLAARHATRQ 128
                 556678*********669999999999999*******9999*99999999999888888888622257899*****************9998887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2149.31
//
Query:       CDO68702.1  [L=358]
Description: hypothetical protein BN946_scf184652.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-42  142.8   0.8    2.8e-41  139.8   0.4    2.1  2  MMR_HSR1_Xtn    C-terminal region of MMR_HSR1 domain
    1.1e-25   89.4   0.1      2e-25   88.6   0.1    1.4  1  TGS             TGS domain
    3.5e-20   72.2   0.0    7.7e-20   71.1   0.0    1.6  1  MMR_HSR1        50S ribosome-binding GTPase
    3.8e-08   33.0   0.1    1.1e-07   31.5   0.0    1.8  2  FeoB_N          Ferrous iron transport protein B
     0.0026   16.8   0.5      0.021   13.8   0.1    2.2  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
  ------ inclusion threshold ------
      0.045   13.8   0.4         12    5.9   0.3    2.3  2  Dynamin_N       Dynamin family
       0.11   12.0   0.4         16    4.9   0.1    2.7  2  GTP_EFTU        Elongation factor Tu GTP binding domain
       0.17   10.5   0.0       0.23   10.1   0.0    1.1  1  Glyco_hydro_66  Glycosyl hydrolase family 66
       0.34   10.8   2.1        2.8    7.8   0.1    2.9  3  RsgA_GTPase     RsgA GTPase


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.4   1.4e-44   2.8e-41       1     106 []     175     281 ..     175     281 .. 0.98
   2 ?    1.0   0.0       0.2   4.1e+02      34      52 ..     300     318 ..     295     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 1.4e-44
  MMR_HSR1_Xtn   1 kgGikitstvkltkldeetvkkilkeykihnaevlir.edvtvDdlidviegnrvYipclyvlNKiDlisleeldelarepnsvviSaekelnldeL 96 
                   kgGi it+tv+lt++d++++k+il+ey+i+na+v ir  ++t+Ddl+dviegnrvYip++yvlNKiD+is+eeld l+r pnsv+iS+++ +n+deL
    CDO68702.1 175 KGGIAITNTVPLTNIDHDEIKAILSEYRINNADVAIRqPNATADDLVDVIEGNRVYIPAIYVLNKIDAISIEELDLLYRIPNSVPISSREWWNVDEL 271
                   69***********************************669********************************************************* PP

  MMR_HSR1_Xtn  97 kekiweeLnL 106
                    ek+we+LnL
    CDO68702.1 272 IEKMWETLNL 281
                   ********98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.2
  MMR_HSR1_Xtn  34 vliredvtvDdlidviegn 52 
                   vl r+++tv+d+ ++i ++
    CDO68702.1 300 VLRRGKCTVEDFCNAIHKE 318
                   666799*******999764 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.1   9.8e-29     2e-25       1      59 [.     282     356 ..     282     357 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 9.8e-29
                 EEEEE.TTSSEEE......EETTB-.HHHHHHHHSTTHHHHEEEEEECS........EEEETTSBB-SSEEEEEE CS
         TGS   1 irvyt.PdGkvpd......lprgat.veDfAykIhrslakkfiyAlVnG........qrvgldhvLedgdvveIv 59 
                 +rvyt P+G +pd      l+rg++ veDf+++Ih+++ak+++yA+V+G        q+vgldhvLed+dvv I 
  CDO68702.1 282 VRVYTkPRGLAPDysqpvvLRRGKCtVEDFCNAIHKEIAKQMKYAIVWGasakhargQKVGLDHVLEDEDVVHIA 356
                 79**********************************************************************996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   3.9e-23   7.7e-20       2     107 ..      56     165 ..      55     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 3.9e-23
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT....TTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas....eeklkplde 95 
                 v++vG p vGKStL+++ltg+++++s++ +tT++++ g++k++g +i+++D+pG+iega++++g g+++ a+ + ++li++v+d+     ++  + ++ 
  CDO68702.1  56 VGFVGFPSVGKSTLMSKLTGTHSEASEIDFTTLTTVPGTLKVHGAPIQILDLPGIIEGANDGRGRGRQVIAVARtCHLIFIVLDVLkplgDK--AIIEA 152
                 99*********************************************************************99978********66554322..23445 PP

                 HHHHHHHH.TTSE CS
    MMR_HSR1  96 eleellee.akkp 107
                 ele++  + +kkp
  CDO68702.1 153 ELESFGIRlNKKP 165
                 5555544454444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.5e-11   1.1e-07       2      57 ..      55     110 ..      54     139 .. 0.95
   2 ?   -2.1   0.0       1.2   2.5e+03     106     121 ..     231     246 ..     219     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.5e-11
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 tv +vG p vGk+tl+ +ltg++++ +    +t     g+lk++g  ++i+DlPGi
  CDO68702.1  55 TVGFVGFPSVGKSTLMSKLTGTHSEASEIDFTTLTTVPGTLKVHGAPIQILDLPGI 110
                 6889***************************************************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 SSEEEEEETHHHHHHT CS
      FeoB_N 106 vpvvlalnmideaekk 121
                 +p + +ln+id+++ +
  CDO68702.1 231 IPAIYVLNKIDAISIE 246
                 6778888888887655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     1e-05     0.021      25      52 ..      50      76 ..      47      84 .. 0.82
   2 ?    0.6   0.0      0.11   2.2e+02     144     204 ..     207     267 ..     198     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
                G-S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealgle 52
                ++G a  vG+ G+P +Gkstl+++l+ +
  CDO68702.1 50 RTGIA-TVGFVGFPSVGKSTLMSKLTGT 76
                56665.58****************9865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
                 SEEEEEEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB- CS
        MeaB 144 dtfvvlllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraaleleeekekeWr 204
                 d+ +    + a D + +i    + i  i+v+nk D   +e+    +r   ++  ++++ W+
  CDO68702.1 207 DVAIRQPNATADDLVDVIEGNRVYIPAIYVLNKIDAISIEELDLLYRIPNSVPISSREWWN 267
                 555554445555666777777789999********99998888888777777666666665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3     0.006        12       1      32 [.      56      87 ..      56      92 .. 0.81
   2 ?    5.5   0.0     0.008        16      98     138 ..      97     140 ..      92     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.006
                EEEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptT 32
                + +vG  S GKS+++ +L+g +   ++   tT
  CDO68702.1 56 VGFVGFPSVGKSTLMSKLTGTHSEASEIDFTT 87
                5789999*************997666666666 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.008
                 TTS-SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEET CS
   Dynamin_N  98 llvkgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsa 138
                  +   + ++DlPG+++ ++      + v   ++ +++i+ v++ 
  CDO68702.1  97 VHGAPIQILDLPGIIEGANDGRgrgRQVIAVARTCHLIFIVLDV 140
                 5677899*********8887776777777777777788777765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0081        16       4      32 ..      54      82 ..      51     110 .. 0.85
   2 ?    4.6   0.0      0.01        21     122     141 ..     230     250 ..     213     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0081
                EEEEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyktgaisk 32
                 ++g++g    GK+TL+ +L+ ++++ s+
  CDO68702.1 54 ATVGFVGFPSVGKSTLMSKLTGTHSEASE 82
                67899999999*********977666555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
                 TTEEEEEEESCGST.HHHHHH CS
    GTP_EFTU 122 gvpiivfiNKmDrl.kaelke 141
                  +p i ++NK+D + ++el+ 
  CDO68702.1 230 YIPAIYVLNKIDAIsIEELDL 250
                 57899*******998666654 PP

>> Glyco_hydro_66  Glycosyl hydrolase family 66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.23     151     202 ..     291     342 ..     267     356 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
                     EE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETTSSBTTBST CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_66 151 paeswkdlanrkvytsavkeyiaaahskgikamaYnliyaalkdeaeadgvk 202
                     +a+++  ++  +  + +v+++ +a+h++ +k m Y ++++a++ +a++++v 
      CDO68702.1 291 LAPDYSQPVVLRRGKCTVEDFCNAIHKEIAKQMKYAIVWGASAKHARGQKVG 342
                     55666666666667789**************************988887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.8   1.6e+03      84     111 ..      11      38 ..       5      39 .. 0.81
   2 ?    7.8   0.1    0.0014       2.8     101     127 ..      55      80 ..      49     112 .. 0.78
   3 ?    0.8   0.0      0.21   4.1e+02      46      63 ..     230     247 ..     208     275 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.8
                  TTTHTTHHHHHHHCTTSEEEEECSTTSS CS
  RsgA_GTPase  84 aktkegleelkellkdktsvlvGqSGvG 111
                  + t+ +l +lk++l++    l+G+SG G
   CDO68702.1  11 KATSYHLGQLKAKLAKLRRELLGPSGGG 38 
                  456677889999999999999****977 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
                  EEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelkt 127
                  t+ +vG   vGKStL+ +l+++ + + 
   CDO68702.1  55 TVGFVGFPSVGKSTLMSKLTGT-HSEA 80 
                  567999999**********997.3344 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.21
                  T-EEEEEEE-GGG--HHH CS
  RsgA_GTPase  46 giepvivlnKiDlleeee 63 
                   i+ + vlnKiD ++ ee
   CDO68702.1 230 YIPAIYVLNKIDAISIEE 247
                  4688889******99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2480.21
//
Query:       CDO68703.1  [L=331]
Description: hypothetical protein BN946_scf184652.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-106  356.5   0.1   1.9e-106  355.6   0.1    1.4  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
       0.17   12.7   0.0       0.31   11.9   0.0    1.3  1  DUF4744         Domain of unknown function (DUF4744)


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.6   0.1  2.1e-110  1.9e-106      15     279 .]       1     274 [.       1     274 [. 0.98

  Alignments for each domain:
  == domain 1  score: 355.6 bits;  conditional E-value: 2.1e-110
                     HHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.- CS
  Ribonuc_red_sm  15 lykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHaesYsllletlvkd 109
                     +yk+++a+fWt ee++l +Dl dw+ kL+ +e++fi+ vlaf+a++d+ivnenlver+++evq++ear+fygfq+++En+H+e+Ysll++t++kd
      CDO68703.1   1 MYKNAQASFWTVEEINLANDLMDWNYKLNANERHFISYVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMIENVHSETYSLLIDTYIKD 95 
                     8********************************************************************************************** PP

                     HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm 110 ekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrDeglHtdfagllfke 204
                     ++e+  lf+ai+++p+++kka+w+ +w+e++++   faerlvafa++eg++f+++Faai+wlkkrgl+pgl++++eli+rDeg+Htdfa+llf++
      CDO68703.1  96 PAERAFLFDAIDTIPCIRKKADWALRWIEDERS--VFAERLVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFHH 188
                     *****************************9885..6*********************************************************** PP

                     HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT...................TT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 205 lkeenelenkeleeeveelikeavelEkefitdal...................pvellglnkedvkqYieyvadrllmnlgyeklYnveeenP 279
                     l+++      +  ++v ++++eave+Ekef+t ++                   pv+l+g+n+++++qYie+vadrll++lg ek+Y +  +nP
      CDO68703.1 189 LRRK------PHPKRVLRIVTEAVEIEKEFLTGTVplplhplsphlltlhiealPVSLIGMNADLMCQYIEFVADRLLVALGNEKHYRA--TNP 274
                     *555......9********************99999****************************************************9..898 PP

>> DUF4744  Domain of unknown function (DUF4744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.31      39      59 ..      75      95 ..      56      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
     DUF4744 39 esepnkpsssFdlaidnYLKD 59
                  + n  s +++l+id+Y+KD
  CDO68703.1 75 IMIENVHSETYSLLIDTYIKD 95
                5678999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2316.66
//
Query:       CDO68704.1  [L=410]
Description: hypothetical protein BN946_scf184652.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-124  414.2   2.2   3.2e-124  413.9   2.2    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
       0.15   12.9   0.0       0.34   11.8   0.0    1.5  1  DUF4744         Domain of unknown function (DUF4744)


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.9   2.2  3.5e-128  3.2e-124       1     279 []      91     359 ..      91     359 .. 0.99

  Alignments for each domain:
  == domain 1  score: 413.9 bits;  conditional E-value: 3.5e-128
                     TT-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   1 rfvlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniH 95 
                     rfvlfpi+y+eiw++ykk+ea+fWt+ee+dlskDl+dw+++L++de++fi++vlaf+a++d+ivnenlver+++evq++ear+fygfq++mEniH
      CDO68704.1  91 RFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWNNRLNDDERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMENIH 185
                     79********************************************************************************************* PP

                     HHHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHH CS
  Ribonuc_red_sm  96 aesYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrD 190
                     +e+Ysll++t++kd+k++++lf+aie++p+++kka+w+  w+++k++   faerlvafa++egi+f+++Fa+i+wlkkrgl+pgl++++eli+rD
      CDO68704.1 186 SETYSLLIDTYIKDPKQREHLFDAIETIPCIKKKADWALHWISDKES--AFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 278
                     *******************************************9885..7********************************************* PP

                     HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 191 eglHtdfagllfkelkeenelenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYnveeenP 279
                     eg+Htdfa+llf++l  +    +++  e ++++i+eav +E+ef+tdalp+ l+g+n+++++qYie+vadrll++lg ek+Ynv  +nP
      CDO68704.1 279 EGMHTDFACLLFSHL--K----RRPHPEIIRQIITEAVAIEQEFLTDALPCALIGMNSKLMCQYIEFVADRLLVALGDEKYYNV--TNP 359
                     ***************..4....559***********************************************************..998 PP

>> DUF4744  Domain of unknown function (DUF4744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.34      38      59 ..     178     199 ..     160     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
     DUF4744  38 aesepnkpsssFdlaidnYLKD 59 
                 +  + n  s +++l+id+Y+KD
  CDO68704.1 178 QIMMENIHSETYSLLIDTYIKD 199
                 55678999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3072.62
//
Query:       CDO68705.1  [L=172]
Description: hypothetical protein BN946_scf184652.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-22   79.5   0.1    3.7e-22   79.1   0.1    1.0  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    5.7e-15   56.2   0.2    6.7e-15   56.0   0.2    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      3e-13   50.0   0.0    3.7e-13   49.7   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    7.5e-11   42.3   0.0    1.1e-10   41.7   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.8e-08   33.3   0.1    7.6e-08   32.4   0.1    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    9.7e-06   25.5   0.0    1.6e-05   24.8   0.0    1.3  1  FR47             FR47-like protein
    0.00016   21.7   0.0    0.00031   20.8   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0056   16.8   0.0      0.011   15.8   0.0    1.6  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.086   12.5   0.1       0.33   10.6   0.0    1.8  2  UTP15_C          UTP15 C terminal


Domain annotation for each model (and alignments):
>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   1.9e-25   3.7e-22       1     152 [.       5     164 ..       5     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 1.9e-25
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvae.......sdrivGyaylgqfkkr.akdwkaelsvylaer 87 
                     ir at +D+++il+iy+++ +n   tf  +++++ee  ++l +l   ++y+  vae       s + vG a l   + r a+d++aels y+   
      CDO68705.1   5 IRNATDDDLNAILDIYNDQILNGTATFHTQIQTLEERVQWLTNL-RAENYPCIVAEvtddesgSKQTVGWANLWHYNMRqAYDGSAELSLYVH-H 97 
                     89*****************************************9.55555555555541443444799************************6.7 PP

  Acetyltransf_4  88 dnnkeglgrelidaleqvlkeqn..ienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                     + + +g+g  l++ l +  ++q+  ++++ a +  +ne  i+f+++ GF   g ++++++k+grw D
      CDO68705.1  98 AFRGKGIGERLLQGLLEETRKQGsrFHTIIALVTTENERTINFWQKQGFMHCGTLREVGYKFGRWLD 164
                     9*******9999888766655543499**************************************99 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2   3.4e-18   6.7e-15       2     137 ..       3     146 ..       2     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.4e-18
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevm...rylpepltleeaeewlerawaeeseeegygwaivl.....kdtg..v.iGsvglrdleeedee...ae 82 
                     L++r++t++Dl+a++ +++d+ ++   ++ ++ +tlee  +wl++ +++    e+y +++ +     +  g  + +G+++l++++ ++     ae
      CDO68705.1   3 LTIRNATDDDLNAILDIYNDQILNgtaTFHTQIQTLEERVQWLTN-LRA----ENYPCIVAEvtddeS--GskQtVGWANLWHYNMRQAYdgsAE 90 
                     99*****************99988333356778999999999996.555....889999977754322..25666*******99998777999** PP

  Acetyltransf_3  83 lgymlapsfwgkGyateavralleyafeel.glerlvavidkeNeaSirvleklGf 137
                     l+++++++f+gkG++   +++lle   ++  + ++++a + +eNe+ i+  +k Gf
      CDO68705.1  91 LSLYVHHAFRGKGIGERLLQGLLEETRKQGsRFHTIIALVTTENERTINFWQKQGF 146
                     **************************75445999*********************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.9e-16   3.7e-13      19     117 .]      36     146 ..      16     146 .. 0.74

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.9e-16
                     HHHHH.HHHH..HHSTTCEEEEEEET......TEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT..TESEEEEEE CS
  Acetyltransf_1  19 aseee.fees..fsleaegllvaeed......geliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeeraree..gikkivlav 101
                      ++ee +++   ++ e+  ++vae         + +G++ l+ ++  ++++  +  sl+V+ ++rgkG+G +Ll+ l+e+ r++   ++ i + v
      CDO68705.1  36 QTLEErVQWLtnLRAENYPCIVAEVTddesgsKQTVGWANLWHYNMrQAYDGSAELSLYVHHAFRGKGIGERLLQGLLEETRKQgsRFHTIIALV 130
                     3333323333436666665555444444666666********99999778888888****************************65557785569 PP

                     ETTEHHHHHHHHHTTE CS
  Acetyltransf_1 102 eedndaairlYeklGF 117
                     +  n+++i++++k GF
      CDO68705.1 131 TTENERTINFWQKQGF 146
                     999************9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   5.7e-14   1.1e-10       3      74 ..      53     146 ..      51     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.7e-14
                     EEEEEEEET......TEEEEEEEEEEES......TCTEE....EEE-GGGTTSSHHHHHHH.H.TT...SE..EE.EE.EEEETHHHHHHHHHHT CS
  Acetyltransf_7   3 gevfVaedd......gkivGfialslld......aeitr....laVdpeyrgkGiGraLle.a.ae...kg..ii.le.qlelnaekaikfYekl 72 
                     + ++Vae        ++ vG + l++++      +        l+V+ ++rgkGiG +Ll+ + +e   +g  ++ ++  +++++e++i+f++k 
      CDO68705.1  53 YPCIVAEVTddesgsKQTVGWANLWHYNmrqaydG---SaelsLYVHHAFRGKGIGERLLQgLlEEtrkQGsrFHtIIaLVTTENERTINFWQKQ 144
                     56777776677788888899999999998875441...25567*****************9744224454433213233334444599******* PP

                     TE CS
  Acetyltransf_7  73 GF 74 
                     GF
      CDO68705.1 145 GF 146
                     ** PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   3.8e-11   7.6e-08      11     114 ..      29     154 ..      15     157 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.8e-11
  Acetyltransf_10  11 etfkefisp.ealrerie...egealllvaeeg......gkivGviel.rdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgik 86 
                      +tf+++i++ e+  ++++   ++++ ++vae+       ++ vG ++l   +            l+V++++rg+Gig++Ll+ ++ee +k+g++
       CDO68705.1  29 ATFHTQIQTlEERVQWLTnlrAENYPCIVAEVTddesgsKQTVGWANLwHYNMrqaydgsAELSLYVHHAFRGKGIGERLLQGLLEETRKQGSR 122
                      77777777664444444235688888888877544555578888885532222455555444458***********************999988 PP

  Acetyltransf_10  87 l....eltvnaspyavpfYeklGFkavgeeqe 114
                           +l   ++   ++f +k+GF  +g  +e
       CDO68705.1 123 FhtiiALVTTENERTINFWQKQGFMHCGTLRE 154
                      66454455555569**********99988776 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     8e-09   1.6e-05      25      79 ..      91     148 ..      79     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8e-09
                 EEEEE-GGG-SSSHHHHHHHHHHHHHHHS-...S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  25 galqvlpehrrrGlgsrlvkalakeiaerg...ktvllvvvasNtpsirlyeklGfek 79 
                  +l+v+  +r++G g rl + l +e +++g   +t++++v ++N++ i++++k Gf  
  CDO68705.1  91 LSLYVHHAFRGKGIGERLLQGLLEETRKQGsrfHTIIALVTTENERTINFWQKQGFMH 148
                 579*************************88555799*******************975 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.6e-07   0.00031      30      59 ..      93     122 ..      76     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddareeglk 59 
                       +V+ ++rGkGi+++L +  l+++r++g +
       CDO68705.1  93 LYVHHAFRGKGIGERLLQGLLEETRKQGSR 122
                      589************************987 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.7e-06     0.011       2     114 ..       5     128 ..       4     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.7e-06
                     EEEE-GGGHHHHHHHHHHHTT----H.........HHHHHHHHHHTTS.EEEEEEE.TTEEEEEEEEEEEEEEETTEEEEEEEEEEEE..E-CCG CS
  Acetyltransf_9   2 irelteedldevlellkyaFqdeespl.......eeireyfrkllees.rvlgaed.ngelvgqlallplelnvpGktlkaagvtgVa..vapeh 85 
                     ir++t++dl+++l++ +      +  +       ee+ +++ +l  e+  +++ae  ++e  ++ ++ +  l  ++ +  + g +  +  v+   
      CDO68705.1   5 IRNATDDDLNAILDIYNDQILNGTATFhtqiqtlEERVQWLTNLRAENyPCIVAEVtDDESGSKQTVGWANLWHYNMRQAYDGSAELSlyVHHAF 99 
                     89999999999999998766666665557778766778888888777735666655788888888888888888886666666665551166666 PP

                     TTS-HHHHHHHHHHHHHHHTT--EEEE-- CS
  Acetyltransf_9  86 rgrgvlskLlaraleemreegqplsllfP 114
                     rg+g+ ++Ll+ +lee r++g ++ ++++
      CDO68705.1 100 RGKGIGERLLQGLLEETRKQGSRFHTIIA 128
                     9*********************9988877 PP

>> UTP15_C  UTP15 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.33      99     128 ..      13      43 ..       5      51 .. 0.91
   2 ?   -0.8   0.0      0.55   1.1e+03     114     145 ..     117     148 ..     108     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
     UTP15_C  99 anvlldlysekl.gqseeldelvkrLkrkvr 128
                 +n++ld+y++++ +  + +++++++L ++v+
  CDO68705.1  13 LNAILDIYNDQIlNGTATFHTQIQTLEERVQ 43 
                 689*********9999*************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.55
     UTP15_C 114 eeldelvkrLkrkvreevelakellelkGmle 145
                 ++  + ++++ + v++e e++  +++ +G ++
  CDO68705.1 117 RKQGSRFHTIIALVTTENERTINFWQKQGFMH 148
                 55567899999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1177.33
//
Query:       CDO68706.1  [L=476]
Description: hypothetical protein BN946_scf184652.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-119  399.7  34.8    3.1e-43  148.5   4.0    3.0  3  Alg6_Alg8     ALG6, ALG8 glycosyltransferase family
  ------ inclusion threshold ------
        1.6    8.6   6.5        1.7    8.5   0.7    2.5  2  COX14         Cytochrome oxidase c assembly


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   4.0   3.5e-47   3.1e-43       1     101 [.      71     169 ..      71     171 .. 0.96
   2 !  131.8   7.2     4e-42   3.6e-38     161     274 ..     171     279 ..     168     283 .. 0.93
   3 !  133.8   8.4   9.6e-43   8.6e-39     307     483 ..     277     466 ..     275     467 .. 0.88

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 3.5e-47
   Alg6_Alg8   1 alllklllipmyrStDFEvqRnWlaiThslplseWytedlseWtLDYPPlfAYfeyllskvakkvldpemlalessrgyesestklFqRltVivsdlll 99 
                 +++lklll+p+yrStDFEv+RnWlaiTh+lp+s+Wy++++seWtLDYPP+fAYfe lls  a  +ldp++++l ++ +y ++s++++qR+tVi+++l+l
  CDO68706.1  71 STCLKLLLFPAYRSTDFEVHRNWLAITHTLPISKWYYDTTSEWTLDYPPFFAYFEKLLSIPA-YWLDPKIVDL-NNLNYGAWSVIAYQRTTVILTELVL 167
                 589***********************************************************.666*******.***********************98 PP

   Alg6_Alg8 100 fi 101
                  +
  CDO68706.1 168 GA 169
                 65 PP

  == domain 2  score: 131.8 bits;  conditional E-value: 4e-42
   Alg6_Alg8 161 kkdlllgallFvllLnfKqialylApayfvylLrkyclkkskkklkvslkrllklgvvvlavfallfgPflasgeqlkqvlsRlFPfkRGLfedyvApN 259
                 +++l+ +++lF++lLnfK+i+lylApayfvylLr+ycl+    ++     r+l+l+ +v++vf++++gPfl +g ql+q+lsRlFPf+RGL ++y+ApN
  CDO68706.1 171 DRKLA-SGFLFAVLLNFKHIYLYLAPAYFVYLLRSYCLSP---TFALLPGRFLSLANAVILVFLASLGPFLLMG-QLPQLLSRLFPFTRGLNHAYWAPN 264
                 68895.********************************54...578899**********************867.************************ PP

   Alg6_Alg8 260 fWalynvvdkvlevv 274
                 +Wal++++d++l  v
  CDO68706.1 265 VWALVTALDRILLRV 279
                 **********99865 PP

  == domain 3  score: 133.8 bits;  conditional E-value: 9.6e-43
   Alg6_Alg8 307 ltllailpslvklllkpskklfllalvlcalsfFlfsfhVHEKaiLlvllpltllalesredlslvlllsvvgtfslfPLlfkdgellikvvltllwll 405
                 l ++++++++ kl++++s+k+f++al+lc++++++f++hVHEKaiLlvl+pl+lla+e+++++++++++s++g++slfPLlf+++e+likv++++lw+l
  CDO68706.1 277 LRVAFQTVYMGKLWTNTSYKSFVTALTLCGFTSYMFGWHVHEKAILLVLVPLSLLATEDNAYFRTFTIASIAGIYSLFPLLFTPAETLIKVIYSTLWAL 375
                 66889999*****************************************************************************************99 PP

   Alg6_Alg8 406 lll.lslkklvkkslkkkkkkvlldrleklyllsllallvllv.llellvlk..............kpperlpflplllisvycsvgvfvlfll 483
                 ++l    +++++ +  +   +v++d +e+lyl+++  ll llv ++ l++ +                 + ++flpl+++svyc+vg++++f++
  CDO68706.1 376 FVLkPIHRQVYQFP--RGVLAVIVDVMERLYLAGFP-LLHLLVtFFPLVARRrsqalsnpaagdveGGASAMEFLPLMMTSVYCAVGLVWAFIR 466
                 99943344555544..446789*************9.555555355555544999*******999855589*******************9975 PP

>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.7   0.00019       1.7       9      34 ..     290     317 ..     283     322 .. 0.78
   2 ?    2.5   0.6     0.015   1.3e+02      21      39 ..     449     467 ..     447     471 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00019
       COX14   9 laDkaHr..ltVltLiGvTlyaggllvy 34 
                 ++++ ++  +t+ltL G+T y+ g+ v+
  CDO68706.1 290 WTNTSYKsfVTALTLCGFTSYMFGWHVH 317
                 5555566336889***********9886 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.015
       COX14  21 LiGvTlyaggllvytvysy 39 
                 L+ +++y+ ++lv+ ++++
  CDO68706.1 449 LMMTSVYCAVGLVWAFIRL 467
                 8999*********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3508.26
//
Query:       CDO68707.1  [L=331]
Description: hypothetical protein BN946_scf184652.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-32  111.8   0.5      6e-32  111.3   0.5    1.2  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.5   3.4e-36     6e-32       1     192 [.     107     275 ..     107     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 3.4e-36
                 BTT--HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS.TS- CS
        Brix   1 grktssrlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkak.kte 92 
                 +r++ss+l q++k++r ++++   s+++ r+++ +k+l e ++   vt+l++l+e   +++ ++v+++    P+gpt++f ++n+ l++d+ + k +t 
  CDO68707.1 107 SRDPSSKLLQFAKEMRLVFPN---SHRInRGNYVVKELAEACRandVTDLIVLHEhrGTPDAMIVSHF----PHGPTVYFTLHNVQLRHDIASYKsSTV 198
                 68899**************66...555568999********99************887788*******....*******************99999999 PP

                 TT---EEEEES.HHH.....HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEEE..STTTTECT..T..EEEEEEESEE CS
        Brix  93 fgsrPllvfngkenf.....kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaiklkksgkklpnlekekkerveLeEiGPr 186
                 ++++P+l+f+   nf     ++++ +l+ lF  p   +  pk ++ +rv++f    n++ d +isfRh  +      k  p       ++v+L E+GPr
  CDO68707.1 199 SEQYPHLIFE---NFssklgERIRDVLKYLF--P---V--PK-EDSKRVMTFA---NED-D-FISFRHHVFL-----KTGP-------RQVQLAEVGPR 269
                 **********...9999999***********..6...2..34.599*******...556.7.9*****9994.....2224.......69********* PP

                 EEEEEE CS
        Brix 187 fdLklr 192
                 f++k++
  CDO68707.1 270 FEMKPY 275
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2521.90
//
Query:       CDO68708.1  [L=388]
Description: hypothetical protein BN946_scf184652.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-18   66.1   0.1    2.6e-08   34.2   0.0    2.5  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    4.4e-15   56.0   0.1    1.6e-08   34.8   0.0    2.4  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.1e-14   52.3   0.1    1.4e-05   25.0   0.0    2.7  3  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.8e-11   44.2   0.1    7.9e-06   26.0   0.0    2.3  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
    1.2e-10   41.2   0.2    1.2e-06   28.4   0.0    2.7  2  FR47             FR47-like protein
    9.2e-07   28.9   0.1     0.0016   18.5   0.0    2.5  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
       0.15   12.0   0.2       0.43   10.5   0.0    1.8  2  Ntox46           Bacterial toxin 46
       0.17   12.6   3.7       0.21   12.2   0.5    2.6  3  Acetyltransf_3   Acetyltransferase (GNAT) domain
       0.22   11.2   0.0        4.5    6.9   0.0    2.2  2  MOZ_SAS          MOZ/SAS family


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.4e-10   8.8e-07      26      75 ..      15      66 ..       4      67 .. 0.71
   2 !   34.2   0.0   1.3e-11   2.6e-08      24      75 ..     296     351 ..     278     352 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.4e-10
                    CTEEEEE-GGGTTSSHHHHHHHHTT.......SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7 26 eitrlaVdpeyrgkGiGraLleaae.......kgiileqlelnaekaikfYeklGFe 75
                    e+ +l+++pe +g+G+G+aL+ +a+       +g+ ++   +  ++a  fYe  G++
      CDO68708.1 15 ELQGLVTAPESQGHGYGTALMHFANaladaqgRGVYIF---T--TEAYTFYETVGYT 66
                    55669*****************8223445534453323...2..36899******97 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 1.3e-11
                     S..TCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  24 d..aeitrlaVdpeyrgkGiGraLlea....ae.kgiileqlelnaekaikfYeklGFe 75 
                     +  ++i+ la++pe++g+G+++aL++a    a+ +g +   ++l+++ + kfYe+lGF+
      CDO68708.1 296 KdmYSIEILATAPEAQGRGYASALVNAvvemAAaEG-R--DVWLVSSDSWKFYERLGFV 351
                     24456777******************8654421455.3..46784445789*******7 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     6e-07    0.0012      61     117 .]      14      65 ..       6      65 .. 0.79
   2 !   34.8   0.0   7.9e-12   1.6e-08      58     117 .]     296     350 ..     237     350 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6e-07
                     EEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  61 ayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +++ +l+ +pe +g+G+G+aL+  +   a  + ++ +++ +    + a  +Ye +G+
      CDO68708.1  14 IELQGLVTAPESQGHGYGTALMHFANALADAQ-GRGVYIFT----TEAYTFYETVGY 65 
                     68899*****************9999977777.33356644....556889977887 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 7.9e-12
                     TTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  58 ggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     ++ + ie la +pe++g+G++saL++a++e a  eg +  +l v++d     ++Ye+lGF
      CDO68708.1 296 KDMYSIEILATAPEAQGRGYASALVNAVVEMAAAEGRDV-WL-VSSDS---WKFYERLGF 350
                     56788999**********************888886666.99.87776...********9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.2e-08   2.3e-05      53     111 ..      15      70 ..       7      77 .. 0.84
   2 ?   -2.4   0.0       2.2   4.3e+03      47      63 ..     182     199 ..     164     201 .. 0.73
   3 !   25.0   0.0   7.1e-09   1.4e-05      49     111 ..     296     355 ..     269     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.2e-08
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      +++ l+ +pe +g G+g+aL++++ + a+ +g +       +++a  fYe++G+++v+e
       CDO68708.1  15 ELQGLVTAPESQGHGYGTALMHFANALADAQGRG---VYIFTTEAYTFYETVGYTVVEE 70 
                      678899**********************888655...444567899*********9966 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.2
  Acetyltransf_10  47 el.rdgshisllfVdpey 63 
                      e+ r  + i++ fVd++ 
       CDO68708.1 182 EIfRGADTIHRAFVDNNM 199
                      444777899999999875 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 7.1e-09
  Acetyltransf_10  49 rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      +d   i+ l+ +pe++g+G+++aL++av e a  + ++ ++ + +s    +fYe+lGF+ v++
       CDO68708.1 296 KDMYSIEILATAPEAQGRGYASALVNAVVEMAAAE-GR-DVWLVSS-DSWKFYERLGFVLVNQ 355
                      44558999***********************9655.44.5665555.4689*******98865 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.7e-06    0.0094      78     127 ..      18      67 ..       5      68 .. 0.92
   2 !   26.0   0.0     4e-09   7.9e-06      67     125 ..     292     350 ..     285     353 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.7e-06
                     EEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9  78 gVavapehrgrgvlskLlaraleemreegqplsllfPssipiYrrfGyei 127
                     g  +ape +g+g+ ++L++ a + ++++g  + + +  ++++Y+  Gy +
      CDO68708.1  18 GLVTAPESQGHGYGTALMHFANALADAQGRGVYIFTTEAYTFYETVGYTV 67 
                     678******************999999999999999999*********87 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 4e-09
                     TTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSHHHHHTTT- CS
  Acetyltransf_9  67 pGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfPssipiYrrfGy 125
                     ++k  +++ +   a+ape +grg++s+L+++++e +++eg  + l    s ++Y+r+G+
      CDO68708.1 292 GEKVKDMYSIEILATAPEAQGRGYASALVNAVVEMAAAEGRDVWLVSSDSWKFYERLGF 350
                     557778899999**********************************************9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00035      0.69      23      82 ..      15      70 ..       9      73 .. 0.82
   2 !   28.4   0.0   5.8e-10   1.2e-06      22      80 ..     299     353 ..     274     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
                SEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47 23 elgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfekiee 82
                el +l + pe ++ G+g+ l +  a+++a  +g  v + +    t++  +ye +G+++ ee
  CDO68708.1 15 ELQGLVTAPESQGHGYGTALMH-FANALADaQGRGVYIFT----TEAYTFYETVGYTVVEE 70
                68899***************85.78888886888777766....67899999999998765 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 5.8e-10
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                  ++  l + pe+++rG++s lv+a+ +  a++g +v lv     + s ++ye+lGf + 
  CDO68708.1 299 YSIEILATAPEAQGRGYASALVNAVVEMAAAEGRDVWLVS----SDSWKFYERLGFVLV 353
                 347788999**************************98875....5799********876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0019       3.7      24      60 ..      13      49 ..       5      54 .. 0.83
   2 !   18.5   0.0   7.9e-07    0.0016      23      62 ..     297     336 ..     277     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
  Acetyltransf_CG 24 vldfthTeVpeelrGkGiAkkLvkaalddareeglkv 60
                      ++++  ++ +e +G+G++ +L+  a   a ++g  v
       CDO68708.1 13 LIELQGLVTAPESQGHGYGTALMHFANALADAQGRGV 49
                     5677788999**************9988888888655 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 7.9e-07
  Acetyltransf_CG  23 gvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvp 62 
                      +++ ++   + +e +G+G+A++Lv+a+++ a +eg  v +
       CDO68708.1 297 DMYSIEILATAPEAQGRGYASALVNAVVEMAAAEGRDVWL 336
                      46666667789************************99865 PP

>> Ntox46  Bacterial toxin 46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022      0.43      48      81 ..     224     258 ..     200     271 .. 0.88
   2 ?   -2.0   0.0       1.6   3.2e+03     120     140 ..     322     342 ..     313     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
                 TEESSS--EEEEE-TT-EEEEEE-TT----S.EEB CS
      Ntox46  48 gldftqpvrvetlargktlwqyqvpgarqgn.wys 81 
                  ld  +  r+ t+ +g +l qy +pg  q   wy 
  CDO68708.1 224 LLDTVHQRRTVTIGHGASLLQYSAPGNDQNSgWYN 258
                 58899999******************998644997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
                 EEEEEEE---EETTTSSS--E CS
      Ntox46 120 ellrstaapvddtwsvksqsy 140
                  ++  +aa   d+w v s+s+
  CDO68708.1 322 AVVEMAAAEGRDVWLVSSDSW 342
                 567778899999999999887 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.62   1.2e+03      84     101 ..      18      35 ..       7      57 .. 0.79
   2 ?   -3.6   0.1         8   1.6e+04      29      35 ..      93      99 ..      73     116 .. 0.48
   3 ?   12.2   0.5   0.00011      0.21      55     112 ..     258     331 ..     186     351 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.62
  Acetyltransf_3  84 gymlapsfwgkGyateav 101
                     g++ ap+++g+Gy+t  +
      CDO68708.1  18 GLVTAPESQGHGYGTALM 35 
                     46677999******9765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8
  Acetyltransf_3 29 pepltle 35
                    ++++t +
      CDO68708.1 93 NPSRTWQ 99
                    2223333 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00011
  Acetyltransf_3  55 g.....waivl........kdtgv.iGsvglrdleeedee.aelgymla.psfwgkGyateavralleyafeel 112
                     +     w ++          +t++  Gs+  + + e+ +    ++++   p+++g+Gya+  v+a++e a +e 
      CDO68708.1 258 NaffraWEVFNtreltkrkAETRElTGSIVQQAFGEKVKDmYSIEILATaPEAQGRGYASALVNAVVEMAAAEG 331
                     2333345554233333332344455888855544444444888998877588*****************97765 PP

>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0023       4.5      80     110 ..      16      46 ..       9      61 .. 0.88
   2 ?    1.8   0.0     0.081   1.6e+02      74     110 ..     295     331 ..     265     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0023
     MOZ_SAS  80 laCilvlPpyqrkgyGklliefsYeLskrek 110
                 l  +++ P  q +gyG+ l++f+ +L+  ++
  CDO68708.1  16 LQGLVTAPESQGHGYGTALMHFANALADAQG 46 
                 6678999****************99988765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.081
     MOZ_SAS  74 saeeynlaCilvlPpyqrkgyGklliefsYeLskrek 110
                  ++ y +  + + P  q +gy + l++   e++  e+
  CDO68708.1 295 VKDMYSIEILATAPEAQGRGYASALVNAVVEMAAAEG 331
                 456788899999**************99888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2812.42
//
Query:       CDO68709.1  [L=488]
Description: hypothetical protein BN946_scf184652.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.1e-152  506.6   0.0   5.3e-147  490.1   0.0    2.0  2  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
    0.00031   19.9   0.0       0.03   13.4   0.1    2.3  2  Peptidase_M42  M42 glutamyl aminopeptidase
  ------ inclusion threshold ------
       0.13   12.5   0.0        5.2    7.4   0.0    2.4  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-06    0.0095       1      28 [.      18      45 ..      18      50 .. 0.95
   2 !  490.1   0.0  8.9e-151  5.3e-147      25     432 .]      60     475 ..      55     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-06
                   HHHH--SHHHHHHHHHHHHHCTT-EEST CS
  Peptidase_M18  1 finksptpyhvvaevaekllkagfkels 28
                   f+n+sptp+h+v+ +  +l kagf++++
     CDO68709.1 18 FVNASPTPFHAVQAASARLEKAGFQKVK 45
                   9************************987 PP

  == domain 2  score: 490.1 bits;  conditional E-value: 8.9e-151
                    EESTTTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEEETTEEEEEEEEESS.SSGGGTT--EEEEEEEE CS
  Peptidase_M18  25 kelsekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkkaegylqvgvetYGggiwetWldrdLsvaGrvl 118
                    k+++e+++w+   + ggky++trn+s+l+AF++ +k+++++g+si+++H+Dsp+lrv+p+sk+ ++gylqvgvetYGggiw+tW+drdLs+aGrv+
     CDO68709.1  60 KQIREQDDWEktLKAGGKYYLTRNQSALLAFTLPQKWQPGAGVSIVATHVDSPNLRVRPISKRFKTGYLQVGVETYGGGIWHTWFDRDLSLAGRVV 155
                    6899*****9877*********************************************************************************** PP

                    ECTT--EEEEEECCSTT---BBB----GGG-GG..GSS--TTTTTSEEEEEEEE.......------TTCCC..........T.CCHHHHHHHHHH CS
  Peptidase_M18 119 vkkkkeekleaklvnierPvlriPnlaiHLdrdineefkfneetelepilglae.......eeeeekedkek..........knkhkkalleliae 197
                    + +k +++ +++lv+i++P+lriP+laiHL+r +  +fkfn+ete++pilgl e       e+       +           + +h++all l+a+
     CDO68709.1 156 IADK-SGNFHSRLVKIDKPLLRIPTLAIHLERGAADNFKFNTETEFVPILGLLEsklnstgEN-------KAeqtssnptdiQGNHHSALLALLAD 243
                    ***7.8**********************************************98655443322.......112344555666589*********** PP

                    HHTS-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT.-TT.TS-SEEEEEEESSCCGTS-STTSGGCTHHHHHHHH CS
  Peptidase_M18 198 elgvevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaed.sle.eedkvrivalfDnEEvGStsaqGadsnfleevler 291
                    +l+v++e i d+el l+daq+++++G+++ef+f+pr+Dn+ s+faa+ea+ + a++ s++  e +v+ +alf +EE+GS s  Ga+s++++++l+r
     CDO68709.1 244 HLSVAPETIHDFELHLYDAQPSVLGGLHNEFVFSPRMDNQFSSFAAVEAISTFASSsSFNvLEGNVNCIALFNHEEIGSVSTSGAESSLIPFLLQR 339
                    *************************************************99888876554246799****************************** PP

                    HHHHHCSTT-HCHHHHHC-EEEEE--EE---TTSGGGS-TTTS--TTSEEEEEEETTSSSTT-HHHHHHHHHHHHHHC-EEEEEEE-TTS----HC CS
  Peptidase_M18 292 isialkkseafeeavlakSlliSaDvahaihPnysskheenhapllnkGvvikvnanqryatnsagaallkevaqkanvklQelvvrndspcGsti 387
                    +s      +a+ + v a+S+liSaD+ ha+hPny+skhe+nh+p +n+G+vik na+qrya+++ g  ++k++ +k + k+Qe++vrnd pcGst+
     CDO68709.1 340 LSPGP---SAYAQSV-ARSFLISADMGHAVHPNYASKHEDNHTPRINGGIVIKTNAKQRYASDALGSFVVKKLIEKKGGKVQEFEVRNDMPCGSTV 431
                    *9988...5566667.9******************************************************************************* PP

                    HHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHHHCC CS
  Peptidase_M18 388 gpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfkaFf 432
                    gp+l +k+G+rt+D+G+a+lsmHSire++gs+dv+ a+ lf +Ff
     CDO68709.1 432 GPML-SKIGMRTVDVGCAMLSMHSIRETAGSQDVQAAIDLFTSFF 475
                    **86.89*************************************9 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0034        20     123     171 ..     270     323 ..     260     334 .. 0.75
   2 !   13.4   0.1     5e-06      0.03     174     292 .]     345     470 ..     342     470 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0034
                    ETTECEEETTHHHHHHHHHHHHHHHHHCTSS-S......SEEEEEEESTCTTTSH CS
  Peptidase_M42 123 langkivskalDdragvavllellkelkeeele......atvylvatvqEEvGlr 171
                    l+n+++ s  +D++++  +++e++  +++++        ++ +++  ++EE+G  
     CDO68709.1 270 LHNEFVFSPRMDNQFSSFAAVEAISTFASSSSFnvlegnVN-CIALFNHEEIGSV 323
                    78999*******************99988753334445333.4444467888865 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5e-06
                    HHHHHHH--SEEEEEEEEEE.-CSTTSTTTTSS...TTS-CEEEEEETTCCSHHHHHHHHH.HHHHHTT--EE.EEEESSSSSTHHH.HHTSTTTS CS
  Peptidase_M42 174 ktsaekikpdiaiavDvtaa.gdtpgskekeak...lgkGpvirvkDasgiyhpklrkkll.elAkknnipyq.levlsgggtDAga.ihltgegv 262
                    ++ a+++  +++i  D+++a + ++ sk+++++   +++G+vi+   ++  ++  l ++++ +l +k++ ++q +ev + + + ++   +l++ g+
     CDO68709.1 345 SAYAQSVARSFLISADMGHAvHPNYASKHEDNHtprINGGIVIKTNAKQRYASDALGSFVVkKLIEKKGGKVQeFEVRNDMPCGSTVgPMLSKIGM 440
                    567788888999******994444555555444799********************9997626899999999834566666554443157889*** PP

                    EEEEEEEEEBSTTSTTEEEEHHHHHHHHHH CS
  Peptidase_M42 263 ptalisiptryiHspvevahlddleatvkL 292
                    +t+ ++ ++  +Hs  e+a  +d++a+++L
     CDO68709.1 441 RTVDVGCAMLSMHSIRETAGSQDVQAAIDL 470
                    ***************************997 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.03   1.8e+02      30      80 ..      72     121 ..      53     131 .. 0.78
   2 ?    7.4   0.0   0.00086       5.2      56      90 ..     410     446 ..     368     452 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.03
                    EE.EEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE----- CS
  Acyl-CoA_dh_M  30 ln.GeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrriee 80 
                    l+ G K + t+ + a la++l ++ +p    g+s+++   d+p+++vr+i +
     CDO68709.1  72 LKaGGKYYLTRNQSALLAFTLPQKWQP--GAGVSIVATHVDSPNLRVRPISK 121
                    444789999999999999999984444..599***************99964 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00086
                    -.----EEEEEEE..GG.GEEE-----BSS-TTS-EE CS
  Acyl-CoA_dh_M  56 d.rarglslflvprdap.gvsvrrieeklGlrglptg 90 
                    + + ++++ f v +d+p g +v+++  k+G+r+++ g
     CDO68709.1 410 EkKGGKVQEFEVRNDMPcGSTVGPMLSKIGMRTVDVG 446
                    2346889999**********************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3537.43
//
Query:       CDO68710.1  [L=974]
Description: hypothetical protein BN946_scf184652.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-52  174.6  20.7    1.1e-07   32.4   0.3   11.8 12  WD40           WD domain, G-beta repeat
    2.2e-24   85.6   2.3    8.1e-05   22.8   0.0    9.7  9  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.6e-15   57.3   0.3    3.3e-15   56.3   0.3    1.5  1  Utp12          Dip2/Utp12 Family
    7.8e-09   34.7   2.3      0.026   13.2   0.0    4.5  5  Nup160         Nucleoporin Nup120/160
    4.4e-07   29.2   1.6       0.17   10.8   0.0    5.6  7  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0028   17.0   0.0        1.8    7.8   0.0    3.5  4  WD40_like      WD40-like domain
  ------ inclusion threshold ------
      0.015   14.6   1.7      0.038   13.3   0.4    2.0  2  PPL5           Prim-pol family 5
      0.016   14.5   0.2        1.3    8.2   0.0    3.2  3  RAB3GAP2_N     Rab3 GTPase-activating protein regulatory subu
      0.037   12.9   3.1        1.2    8.0   0.0    4.0  5  PALB2_WD40     Partner and localizer of BRCA2 WD40 domain
      0.093   11.5   0.0         31    3.1   0.0    4.0  5  Nucleoporin_N  Nup133 N terminal like
       0.11   11.6   0.0        9.4    5.1   0.0    2.8  3  Coatomer_WDAD  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.2e-06    0.0068       8      38 .]      56      87 ..      50      87 .. 0.91
   2 !   25.3   0.0   1.2e-08   1.9e-05       4      38 .]      94     129 ..      91     129 .. 0.94
   3 !   10.6   0.0   0.00052      0.84       4      38 .]     136     184 ..     133     184 .. 0.74
   4 !   11.5   0.0   0.00028      0.45       2      37 ..     189     225 ..     188     226 .. 0.92
   5 !    7.2   0.0    0.0062        10       9      37 ..     259     286 ..     252     287 .. 0.83
   6 !   23.4   0.1   4.7e-08   7.7e-05       7      38 .]     407     438 ..     400     438 .. 0.93
   7 ?   -1.8   0.0       4.4   7.2e+03      17      38 .]     455     478 ..     444     478 .. 0.78
   8 !   17.2   0.2   4.3e-06    0.0071       4      37 ..     485     519 ..     482     520 .. 0.89
   9 !    9.9   0.0   0.00089       1.4       4      37 ..     542     575 ..     539     575 .. 0.83
  10 !   21.7   0.0   1.6e-07   0.00025       6      37 ..     585     617 ..     580     617 .. 0.91
  11 ?    0.2   0.1      0.97   1.6e+03      27      38 .]     658     669 ..     622     669 .. 0.58
  12 !   32.4   0.3   6.5e-11   1.1e-07       2      37 ..     674     710 ..     673     711 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.2e-06
                ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38
                tGH   vt++  sp  + +a G  Dg+vr+W+
  CDO68710.1 56 TGHrAEVTAILRSPQRDIFAVGYADGSVRLWS 87
                8**888****************99*******5 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.2e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + t+ GH + vt+laf+  g+ lasGs D  + +Wd
  CDO68710.1  94 IATFNGHkKAVTALAFDETGTRLASGSQDTDLILWD 129
                 679****888*************************9 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00052
                 EEEEESS.SSEEEEE.......EETTSSE...........EEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla.......fspdgaw...........lasGsdDgtvriWd 38 
                 l+ l+GH + +t+++                         l+++s+D  +++Wd
  CDO68710.1 136 LYRLRGHrDQITAIRflrpaaeS-----ApststgaapgfLLTASKDTFLKLWD 184
                 66799**888****655555553.....055555888888889**********9 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00028
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  c++t  +H s v+ ++ sp++ ++++Gs  g ++ W
  CDO68710.1 189 HCIQTVVAHrSEVWTMDLSPEQELVFTGSGEGELKAW 225
                 599999***999****************889999988 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0062
                 SSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvriW 37 
                  H  v+ ++f+p++++la  s D++v ++
  CDO68710.1 259 SH-RVSQISFHPHQPYLAVQSHDKSVEVF 286
                 56.6999**********86466****986 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 4.7e-08
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l GH ++v+ l+ s+d a+las+s +g+++iW+
  CDO68710.1 407 LPGHrTDVRTLCLSSDDALLASAS-NGSLKIWN 438
                 67***99*****************.*******8 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 4.4
                 E..EETTSSEEEEEETTSEEEEEE CS
        WD40  17 a..fspdgawlasGsdDgtvriWd 38 
                 +  f p  + +a G++ g + i+d
  CDO68710.1 455 CstFLPGDRQVAVGTKSGEILIYD 478
                 244888888899999999999998 PP

  == domain 8  score: 17.2 bits;  conditional E-value: 4.3e-06
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + t+ +H   v+s+ + pd + l+sGs D+ v++W
  CDO68710.1 485 VDTIQAHtATVWSIHVRPDEQGLVSGSADKDVKFW 519
                 668899*777************************* PP

  == domain 9  score: 9.9 bits;  conditional E-value: 0.00089
                 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGHssvtslafspdgawlasGsdDgtvriW 37 
                 +rtl+  ++v s+++sp+g++la +  D tv+++
  CDO68710.1 542 VRTLKMTDDVLSVRYSPNGKLLAVALLDSTVKVF 575
                 56666556799************9978*****95 PP

  == domain 10  score: 21.7 bits;  conditional E-value: 1.6e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l GH  +v s++ s d+++++++s D++v+iW
  CDO68710.1 585 SLYGHkLPVLSMDISGDSKLIVTCSADKNVKIW 617
                 678**777************************* PP

  == domain 11  score: 0.2 bits;  conditional E-value: 0.97
                 EEETTSEEEEEE CS
        WD40  27 sGsdDgtvriWd 38 
                 + ++D+ v+ Wd
  CDO68710.1 658 TVGKDKMVKYWD 669
                 2456*******8 PP

  == domain 12  score: 32.4 bits;  conditional E-value: 6.5e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++++l+GH + v++la+s++g+++++Gs D+++r+W
  CDO68710.1 674 ENIQKLEGHhGEVWALAVSHHGKFVVTGSHDKSIRVW 710
                 68899****777****************99******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     5e-08   8.1e-05      25      90 ..      46     110 ..      30     111 .. 0.84
   2 !   10.4   0.0   0.00039      0.64      36      89 ..      99     151 ..      96     153 .. 0.90
   3 ?    0.2   0.0      0.57   9.2e+02      52      87 ..     170     204 ..     168     209 .. 0.86
   4 !    7.9   0.0    0.0023       3.8       4      80 ..     207     301 ..     204     308 .. 0.72
   5 !   11.0   0.0   0.00024       0.4      28      81 ..     401     453 ..     398     459 .. 0.88
   6 !    8.2   0.0    0.0019         3      10      68 ..     465     522 ..     464     535 .. 0.69
   7 !   12.0   0.0   0.00012      0.19      36      71 ..     546     581 ..     526     597 .. 0.83
   8 !   12.1   0.0   0.00011      0.19       2      90 ..     555     641 ..     554     643 .. 0.88
   9 ?    2.2   0.0      0.14   2.2e+02      35      66 ..     680     711 ..     663     719 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5e-08
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +gq++   +e+++  ev+++  +p+  ++av+y+dg+vrl +a+s+ v+ +++ +++ avt l + 
   CDO68710.1  46 KGQMLAMWHETGHRAEVTAILRSPQRDIFAVGYADGSVRLWSASSTSVIATFNGHKK-AVTALAFD 110
                  4455555588999***************************************99999.69999875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00039
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++ v++La+ + g+ La + +d+ + l d+  +  +  l+ ++++ +t + +
   CDO68710.1  99 GHKKAVTALAFDETGTRLASGSQDTDLILWDVVGESGLYRLRGHRDQ-ITAIRF 151
                  57899***************************999999999999985.888765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.57
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +L  a +d+ ++l d +++++++++ +++++ v ++
   CDO68710.1 170 FLLTASKDTFLKLWDLQTQHCIQTVVAHRSE-VWTM 204
                  6888999******************999885.6655 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0023
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRlngqrvwtl..................eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +p+ +L+  ++ +gel +  ++ + + ++                     +++++v++++++p    Lav  +d +v+++ + +++ +++ ++ +
   CDO68710.1 207 SPEQELVFTGSGEGELKAWKIDHEALAQGlretetgevtrfiypaatLPLASSHRVSQISFHPHQPYLAVQSHDKSVEVFRIRTEDEIKKKQARR 301
                  5666666666666666666666665555555555556666666655545678899**************************99999998877765 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00024
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  r+++++ +++   vr L+ + d+ lLa a s+g++++ +++++ ++++++++  
   CDO68710.1 401 RLYSVDLPGHRTDVRTLCLSSDDALLASA-SNGSLKIWNMKTTACIRTMDCGYA 453
                  677787888999************99976.89*****************99876 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0019
  ANAPC4_WD40  10 iAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  +A++t++ge+l++ +    ++++  +++  +v s++ +pd++ L+ + +d  v++ + e
   CDO68710.1 465 VAVGTKSGEILIYDIASSSLVDT-IQAHTATVWSIHVRPDEQGLVSGSADKDVKFWEFE 522
                  46777777777777766666655.46777777777777777777777777777776666 PP

  == domain 7  score: 12.0 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  k    v s++++p+gklLava  d++v+++   + k
   CDO68710.1 546 KMTDDVLSVRYSPNGKLLAVALLDSTVKVFYQDTLK 581
                  5567899********************998766655 PP

  == domain 8  score: 12.1 bits;  conditional E-value: 0.00011
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++p+  L+A+a  d+ + vf  +  + +     +++  v s+  + d kl++   +d +v++     g++ +s+ +++e+ v+ + ++
   CDO68710.1 555 RYSPNGKLLAVALLDSTVKVFYQDTLKFFLS-LYGHKLPVLSMDISGDSKLIVTCSADKNVKIWGLDFGDCHKSIFAHDES-VMQVAFE 641
                  7999999*************99999998877.6899999*************99999******999999999999888874.8877765 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.14
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +++ +ev +La ++ gk+ + + +d ++r+ +
   CDO68710.1 680 EGHHGEVWALAVSHHGKFVVTGSHDKSIRVWE 711
                  678899*********************99865 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.3     2e-18   3.3e-15       9     106 ..     819     934 ..     817     935 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 2e-18
                 HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTT...................TTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHHH CS
       Utp12   9 vlekippsdirltvlrLpssyvlkLLeflaerlaeks...................phlelllrwlkallrvHgsylvaspsdlvpaLrslqkslrerl 88 
                 v++k+p++ + +++l+Lp+  v+ L+++l+ ++++ s                   +++ l+ r++++llr+H++++va++  +++aL  l+++lre+l
  CDO68710.1 819 VVQKVPSTALYDALLVLPFGKVVSLMRYLNVWAQKASvcalygwcdiltvcavsqeWNIVLTSRIIFFLLRTHHHQIVANR-VMRTALIPLRRNLREGL 916
                 899******************************7777*****************999************************.6**************** PP

                 HHHHHHHHHHHHHHHHHH CS
       Utp12  89 ktlskllglnlgrLdyll 106
                 + +++++g+nl++L +++
  CDO68710.1 917 RRQKDTIGYNLAALCFIQ 934
                 **************9986 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.027        44     224     259 ..      64     100 ..      59     128 .. 0.80
   2 !   11.2   0.0   6.3e-05       0.1     229     256 ..     167     194 ..     132     229 .. 0.82
   3 !   13.2   0.0   1.6e-05     0.026     214     285 ..     407     488 ..     395     523 .. 0.72
   4 ?    3.9   0.0     0.011        17     223     264 ..     596     637 ..     590     680 .. 0.78
   5 ?   -3.9   0.1       2.4   3.8e+03     224     246 ..     690     711 ..     686     715 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.027
                 ......TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 224 avvei.gqtylfalsrdgkLrvWnlltgkclatidll 259
                 a+ ++ ++++ ++ + dg +r+W+ ++ +++at++  
  CDO68710.1  64 AILRSpQRDIFAVGYADGSVRLWSASSTSVIATFNGH 100
                 45555678888888******************97755 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.3e-05
                 TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclati 256
                 +  +l+++s d +L++W+l+t+ c+ t 
  CDO68710.1 167 APGFLLTASKDTFLKLWDLQTQHCIQTV 194
                 4569*********************985 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.6e-05
                 T-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE--............-SSSTTS--SSEESEEESSSSEEEE CS
      Nup160 214 svalsldvavavveigqtylfalsrdgkLrvWnlltgkclatidll...........rdeeaqdessskstldpaesslirvs 285
                  +   +dv + + +  ++ l+a  ++g L++Wn +t  c++t+d+            r++    +s++ +  d a+ssl+  +
  CDO68710.1 407 LPGHRTDVRTLCLS-SDDALLASASNGSLKIWNMKTTACIRTMDCGyaicstflpgdRQVAVGTKSGEILIYDIASSSLVDTI 488
                 55555666666776.7788889999********************87777777777777777777777666666666666655 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.011
                 T.....TTTEEEEEETT-EEEEEETTTTEEEEEEE--..-SSS CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltgkclatidll.rdeea 264
                 ++++  +++++++ s d+++++W l+ g c  +i      +++
  CDO68710.1 596 MDISG-DSKLIVTCSADKNVKIWGLDFGDCHKSIFAHdESVMQ 637
                 45555.999*****************99999998776333333 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 2.4
                 .....TTTEEEEEETT-EEEEEE CS
      Nup160 224 avveigqtylfalsrdgkLrvWn 246
                 av++ + +++++ s d+ +rvW 
  CDO68710.1 690 AVSH-HGKFVVTGSHDKSIRVWE 711
                 5667.889999***********5 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0001      0.17     150     285 ..      66     196 ..      51     214 .. 0.73
   2 ?    2.2   0.0     0.044        72     168     224 ..     240     296 ..     195     308 .. 0.72
   3 !    4.7   0.1    0.0077        13     262     315 ..     427     480 ..     423     492 .. 0.77
   4 ?   -0.9   0.0      0.39   6.4e+02     184     217 ..     488     522 ..     480     534 .. 0.78
   5 ?    4.1   0.0     0.012        19     187     215 ..     548     577 ..     521     582 .. 0.82
   6 ?   -1.2   0.0      0.46   7.4e+02     259     283 ..     604     628 ..     593     641 .. 0.78
   7 ?   -3.5   0.0       2.3   3.7e+03     192     214 ..     688     710 ..     673     712 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
    Ge1_WD40 150 trgdkaeiwsvdmiaskygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnh 247
                 +r+ + +i+ v        s  l +++ ++++  ++ h   ++  af   Gt la  s+d  + ++ v       +  L++ + h   +++++ fl   
  CDO68710.1  66 LRSPQRDIFAVGYADG---SVRLWSASSTSVIATFNGHKkAVTALAFDETGTRLASGSQDTDLILWDVVG-----ESGLYRLRGHRD-QITAIRFLRPA 155
                 5555555555555443...334444555667778888874788889***************999998864.....467999999986.69999999998 PP

    Ge1_WD40 248 kee.sdeq...fWrfaitgadnnselklWscelWtClqtikf 285
                  e+ + ++      f++t a++++ lklW  ++ +C+qt+  
  CDO68710.1 156 AESaPSTStgaAPGFLLT-ASKDTFLKLWDLQTQHCIQTVVA 196
                 886343331113457766.567899**************854 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.044
    Ge1_WD40 168 gsgelsveeieegllkieehsliveaafspdGtalatasedGevkffqvyledeeep 224
                 ++ge++      ++l + +   +++ +f p    la+ s+d  v  f++  ede ++
  CDO68710.1 240 ETGEVTRFIYPAATLPLASSHRVSQISFHPHQPYLAVQSHDKSVEVFRIRTEDEIKK 296
                 344444444455677777788899999**********************99987544 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0077
    Ge1_WD40 262 gadnnselklWscelWtClqtikfapsiesslkaevlkaeldlsaeyLllsdlk 315
                 ++  n  lk+W+ ++  C++t+     i s++ +   ++ + + +  +l+ d++
  CDO68710.1 427 ASASNGSLKIWNMKTTACIRTMDCGYAICSTFLPGDRQVAVGTKSGEILIYDIA 480
                 5778999***************99888888887776666666666666666665 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.39
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvy 217
                 i+ h+ ++ +  + pd   l   s+d  vkf+   
  CDO68710.1 488 IQAHTaTVWSIHVRPDEQGLVSGSADKDVKFWEFE 522
                 56665488889999*****************9865 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.012
    Ge1_WD40 187 hsliveaafspdGtalatasedGevk.ffq 215
                 +  + +  +sp+G  la+a  d +vk f+q
  CDO68710.1 548 TDDVLSVRYSPNGKLLAVALLDSTVKvFYQ 577
                 44678889*****************95566 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 0.46
    Ge1_WD40 259 aitgadnnselklWscelWtClqti 283
                 +i ++++++++k+W  +   C + i
  CDO68710.1 604 LIVTCSADKNVKIWGLDFGDCHKSI 628
                 4666778889999999988888776 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 2.3
    Ge1_WD40 192 eaafspdGtalatasedGevkff 214
                   a+s  G  + t s+d  ++ +
  CDO68710.1 688 ALAVSHHGKFVVTGSHDKSIRVW 710
                 55555555555555555555554 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.97   1.6e+03       1      30 [.     199     228 ..     199     234 .. 0.85
   2 !    7.8   0.0    0.0011       1.8      52     109 ..     421     479 ..     414     518 .. 0.82
   3 ?    4.4   0.0     0.012        20       3      50 ..     593     640 ..     591     645 .. 0.92
   4 ?   -1.8   0.0      0.92   1.5e+03       2      27 ..     685     710 ..     684     714 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.97
   WD40_like   1 eeiYsidiskkgslilyGgkddkctvlkle 30 
                 +e++++d+s++ +l+  G+ + +++  k++
  CDO68710.1 199 SEVWTMDLSPEQELVFTGSGEGELKAWKID 228
                 699***************999888877766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
   WD40_like  52 dddlilvvtlDGtillslleneeevenekieedi.stvkviddklliGtnkGsiyvfsk 109
                 +dd +l  +  G +    ++    +++ +   +i st    d ++++Gt+ G+i +++ 
  CDO68710.1 421 SDDALLASASNGSLKIWNMKTTACIRTMDCGYAIcSTFLPGDRQVAVGTKSGEILIYDI 479
                 5788999999999999999999999999999999455666778999*******999964 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.012
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkl 50 
                 + s+dis +++li+  + d+++++  l+ ++   ++   ++Sv+ v +
  CDO68710.1 593 VLSMDISGDSKLIVTCSADKNVKIWGLDFGDCHKSIFAHDESVMQVAF 640
                 789***************************999999999****98876 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.92
   WD40_like   2 eiYsidiskkgslilyGgkddkctvl 27 
                 e++++ +s++g++++ G++d+ ++v 
  CDO68710.1 685 EVWALAVSHHGKFVVTGSHDKSIRVW 710
                 8999****************999886 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   2.4e-05     0.038     158     239 ..     261     342 ..     248     355 .. 0.71
   2 ?   -0.7   0.0      0.43   7.1e+02     158     208 ..     919     968 ..     906     973 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
        PPL5 158 skdkvsyhvharsltyleerlaaeakgveeveeksskkkskekkkklkkktsrkkkkegkk.ekesekeeededeed.dlsdlv 239
                 +  ++s+h h   l+++++  + e   +++ e++ +kk+ ++++++ +k+ ++k kk+g++ + +++++  + de+d +l+dl 
  CDO68710.1 261 RVSQISFHPHQPYLAVQSHDKSVEVFRIRT-EDEIKKKQARRRRRAKEKELEKKGKKKGEEaDGDAHMD-AEYDEKDvELADLF 342
                 55789***************9999999988.66666666666666666666555555555505555555.45444443788875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.43
        PPL5 158 skdkvsyhvharsltyleerlaaeakgveeveeksskkkskekkkklkkkt 208
                 +kd + y + a  + +++  ++++a+  ee ee+ +++k++ek +++kk +
  CDO68710.1 919 QKDTIGYNLAALCFIQRQTDAKRTAEFYEE-EEDLTEEKVREKIAEGKKRK 968
                 678999999999999999999999999988.99999999999988877765 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.18   2.9e+02     327     345 ..      35      53 ..      27      60 .. 0.86
   2 ?    0.7   0.0      0.15   2.5e+02      74     111 ..      69     107 ..      59     127 .. 0.73
   3 ?    8.2   0.0   0.00078       1.3      71     114 ..     457     500 ..     420     516 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.18
  RAB3GAP2_N 327 sLgRVlLlDvqagvvvRlW 345
                 +L+ Vl++Dv++g+++ +W
  CDO68710.1  35 ALEDVLVWDVKKGQMLAMW 53 
                 5788*************** PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.15
  RAB3GAP2_N  74 pdwtviavGlssGylrfytengelLlsql.lheepvlki 111
                 p+  + avG+ +G++r+++ + + ++     h+++v+ +
  CDO68710.1  69 PQRDIFAVGYADGSVRLWSASSTSVIATFnGHKKAVTAL 107
                 5667889*********99988776555431455666555 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00078
  RAB3GAP2_N  71 qgspdwtviavGlssGylrfytengelLls.qllheepvlkikcv 114
                 +  p  + +avG++sG +++y+ + + L+   + h++ v +i+ v
  CDO68710.1 457 TFLPGDRQVAVGTKSGEILIYDIASSSLVDtIQAHTATVWSIH-V 500
                 44777889**************999888761578999999999.4 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22   3.5e+02     199     215 ..      36      52 ..      24      66 .. 0.85
   2 ?    0.9   0.1      0.11   1.8e+02     304     328 ..     180     204 ..     170     225 .. 0.78
   3 ?    8.0   0.0   0.00071       1.2     190     222 ..     422     454 ..     418     459 .. 0.91
   4 ?   -2.0   0.0      0.81   1.3e+03     295     328 ..     465     498 ..     458     517 .. 0.69
   5 ?   -1.7   0.0      0.65   1.1e+03     185     217 ..     597     629 ..     592     641 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
  PALB2_WD40 199 lnniviWnlktGqllkk 215
                 l+++++W++k Gq+l  
  CDO68710.1  36 LEDVLVWDVKKGQMLAM 52 
                 6789**********976 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
  PALB2_WD40 304 iavWdlllghctalllpesdesWsl 328
                 + +Wdl   hc   ++++  e W++
  CDO68710.1 180 LKLWDLQTQHCIQTVVAHRSEVWTM 204
                 569***************999**97 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00071
  PALB2_WD40 190 kdallgttvlnniviWnlktGqllkkieigesy 222
                  dall+++   ++ iWn+kt   +++++ g+++
  CDO68710.1 422 DDALLASASNGSLKIWNMKTTACIRTMDCGYAI 454
                 69**************************99875 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.81
  PALB2_WD40 295 aaavltsGaiavWdlllghctalllpesdesWsl 328
                 +a    sG i ++d+  +     + +++ + Ws+
  CDO68710.1 465 VAVGTKSGEILIYDIASSSLVDTIQAHTATVWSI 498
                 4444558888888888888888888888888876 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 0.65
  PALB2_WD40 185 eveGekdallgttvlnniviWnlktGqllkkie 217
                 ++ G    +++ ++++n+ iW l  G   k+i 
  CDO68710.1 597 DISGDSKLIVTCSADKNVKIWGLDFGDCHKSIF 629
                 567888888999999999999999998887775 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.77   1.3e+03     188     238 ..      91     138 ..      81     186 .. 0.72
   2 ?    3.1   0.0     0.019        31     200     231 ..     197     228 ..     177     269 .. 0.89
   3 ?   -1.6   0.0      0.52   8.5e+02     199     252 ..     257     308 ..     236     325 .. 0.80
   4 ?   -1.1   0.0      0.36   5.9e+02     204     252 ..     593     642 ..     580     659 .. 0.69
   5 ?    1.9   0.0     0.045        73     193     229 ..     675     711 ..     667     777 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.77
                    .--SSS--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-E CS
  Nucleoporin_N 188 lsilpgvlsgasereeivqlridssrrilytlsskgvirvydlsasngess 238
                     s+++ +++    ++++++l+ d++  +l + s++  +  +d+  ++g  +
     CDO68710.1  91 TSVIATFNG---HKKAVTALAFDETGTRLASGSQDTDLILWDVVGESGLYR 138
                    356666666...778888888888888888888888888888876666444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.019
                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydls 231
                     r+e++ +  ++++++++t s +g+++++++ 
     CDO68710.1 197 HRSEVWTMDLSPEQELVFTGSGEGELKAWKID 228
                    6899**************************97 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.52
                    --GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH CS
  Nucleoporin_N 199 sereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqillea 252
                     +++++ q+  ++ +  l + s ++ ++v+++ ++  +  +k+++  r++ +e+
     CDO68710.1 257 ASSHRVSQISFHPHQPYLAVQSHDKSVEVFRIRTE--DEIKKKQARRRRRAKEK 308
                    56788899999999999999999999999999966..77888888888887776 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.36
                    EEEEEEECCTCEEEEEETTSEEEEEEEETTCE.E-EEEEEEEHHHHHHHH CS
  Nucleoporin_N 204 ivqlridssrrilytlsskgvirvydlsasng.esslksdidirqillea 252
                    + ++ i+  +++++t s++++++++ l +    +s   +d ++ q+  e+
     CDO68710.1 593 VLSMDISGDSKLIVTCSADKNVKIWGLDFGDChKSIFAHDESVMQVAFER 642
                    6678888888***************9985433445555566666665555 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.045
                    S--G----GG-EEEEEEECCTCEEEEEETTSEEEEEE CS
  Nucleoporin_N 193 gvlsgasereeivqlridssrrilytlsskgvirvyd 229
                    ++ +    + e+++l++++  + ++t s ++ irv++
     CDO68710.1 675 NIQKLEGHHGEVWALAVSHHGKFVVTGSHDKSIRVWE 711
                    55556667899*************************7 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.027        44     115     151 ..     167     202 ..     154     243 .. 0.85
   2 ?    5.1   0.0    0.0058       9.4      87     153 ..     430     497 ..     418     532 .. 0.73
   3 ?   -2.5   0.0       1.2   1.9e+03      35      50 ..     551     567 ..     536     582 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
                    XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 115 fgGalLgvksegsvsfYDweqgklvrridvkkvknVv 151
                     +G lL +++++++ ++D++++  ++ +  +  ++V+
     CDO68710.1 167 APGFLLTASKDTFLKLWDLQTQHCIQTVVAHR-SEVW 202
                    46************************999887.6665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0058
                    XXXXXXX.XXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  87 ssksvkifknfkekktksikleyqvdkifg....GalLgvksegsvsfYDweqgklvrridvkkvknVvws 153
                    s++s+ki    +   ++++++ y++ + f         g+ks + + +YD+++ +lv  i+ +     vws
     CDO68710.1 430 SNGSLKIWNMKTTACIRTMDCGYAICSTFLpgdrQVAVGTKSGE-ILIYDIASSSLVDTIQAHT--ATVWS 497
                    56677774333445566777777776666665533345666666.****************995..66676 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.2
                    XXXXXXXXXXXXXXX.X CS
  Coatomer_WDAD  35 pqslshnpngrfvlV.c 50 
                    + s++++png++++V  
     CDO68710.1 551 VLSVRYSPNGKLLAVaL 567
                    44556666666666632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.53
# Mc/sec: 5576.04
//
Query:       CDO68711.1  [L=287]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   25.1   0.0      3e-05   24.2   0.0    1.5  1  DPBB_1    Lytic transglycolase
     0.0004   20.6   0.1    0.00046   20.4   0.1    1.1  1  YL1       YL1 nuclear protein


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.4e-09     3e-05      28      82 ..     212     267 ..     184     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.4e-09
                 -SSS-TT-EEEETT--EEEEEEEE----..STTECEEE-HHHHHHHT-TTTS-EEEE CS
      DPBB_1  28 hktlplgtycrvlsgksvtVtitDrgpf..ppgrhiDLSkaAfeklakpraGvipVk 82 
                 +k   +   c+  ++k   V+++D +      ++h DL kaAf++la+ + G + V+
  CDO68711.1 212 PKCFKFLELCHS-AQKCAFVRVVDSCAGcaKGSKHVDLTKAAFSTLANLEEGLLTVQ 267
                 444444445666.36999**********88889********************9998 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   5.1e-08   0.00046      48     111 ..      81     138 ..      45     197 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  48 nsDsdfdsdeedeesdeeedeeegekelerqerkkr.....kkekkkrkaqkkkskkkkkkqkkkkkkk 111
                 +sDsd+ +++++     ++ ++ g   le  ++k +            k++ kk++kk +++ ++k +k
  CDO68711.1  81 DSDSDMADQDGE-----DDSDDPGVSVLEPRAKKSKaqakaS------KKPTKKANKKASAKVSAKATK 138
                 467777333332.....2233345555554444444222221......222222222221111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2043.75
//
Query:       CDO68712.1  [L=394]
Description: hypothetical protein BN946_scf184652.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-58  196.2   0.0    2.5e-57  194.2   0.0    1.9  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.0   1.4e-61   2.5e-57       2     382 .]      12     384 ..      11     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 1.4e-61
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH.....CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-T CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdea.....fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallka 90 
                      T+lvha+ e +    +va+ ++ ++t++  +  e+          k+++YsR++   ++ +e+ ++++++g  a+ ++sG+aA+ aa++ +   
       CDO68712.1  12 TQLVHADDELH--GPEVAPSLSVSTTFRAPNPLETvkeefDMWSPKNHIYSRYTQSVSTRVERVLSKINDG-YAITFASGLAASYAALVYFK-- 100
                      88899988865..5799999********9875554455533445556***********************9.5799********65555443.. PP

                      TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-G CS
  Cys_Met_Meta_PP  91 GdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrp 184
                        + ++ +  Y g+++ ++ + +  + +   +  +d       +++  +l +lEtp np+ +  Di+  a+ ++++g  ++vD tfa p +q p
       CDO68712.1 101 -PKRIAISGGYFGCHATIEIYKRSRQADLPLISIDD------DFQP-GDLCWLETPLNPTGEARDIKYYADKIHAVGGQLLVDSTFAPPPIQYP 186
                      .4567778889999****999998888887776644......4444.699******************************************** PP

                      GGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS......T. CS
  Cys_Met_Meta_PP 185 lklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh......p. 271
                      +k+gaD+v+hS+TKy gGhsd++ Gv+v+ ++e++++ l  +   lG+++   +awlllr l+TL+lR+ r++enA  +A++L+k       + 
       CDO68712.1 187 FKWGADLVMHSGTKYFGGHSDLLCGVLVAPTREKWDE-LGHIRTFLGNMMGSLEAWLLLRSLRTLHLRVPRQSENAYGLAQWLAKAaggkahDg 279
                      *******************************999998.78899*****************************************9965555515 PP

                      ....TEEEEE-TTSTTSTTHHHHHHHSSSG-SEEEEEESSHH.HHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTE CS
  Cys_Met_Meta_PP 272 ....kvekvyYpglpshpqhelakkqlkgaggvlsFelksee.ekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddl 360
                           vekv + +l+      +  + + ++g   +F +  ++ e a+++ ++lk f  a+slGgveslie+ +             +++  ++l
       CDO68712.1 280 ipagVVEKVWHSSLQGVDARGFDPRTQLEGGWNATFAILLTNkEYAARLPHSLKYFVPATSLGGVESLIEQRV-----------NLDTTADPRL 362
                      55669**********88777777777666666666655444338899*********************98654...........345566789* PP

                      EEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 361 iRlsvGiEdvdDliaDlkqale 382
                      +R+svG+Ed++Dl++Dl++a++
       CDO68712.1 363 VRISVGVEDLEDLKDDLRRAFQ 384
                      ********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2986.92
//
Query:       CDO68713.1  [L=368]
Description: hypothetical protein BN946_scf184652.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.19   11.3   0.0       0.32   10.6   0.0    1.5  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.8e-05      0.32      72     114 ..     195     243 ..      99     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.8e-05
  Acyltransferase  72 R........ksnaraagsleniselleegklvviFPEGtrsregellpfkk 114
                      R        +s   + g+le i  + ++++ vviFPE t+s+ + ll+f  
       CDO68713.1 195 RtaqppipeDSTTAKPGTLEAI--RSKSDRPVVIFPECTTSNGRALLRFAE 243
                      2555555445666666666666..4566678*************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2631.07
//
Query:       CDO68714.1  [L=280]
Description: hypothetical protein BN946_scf184652.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-15   57.4   8.4      2e-15   57.4   8.4    2.0  2  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.13   2.4e+03      66      79 ..      34      47 ..      12      52 .. 0.61
   2 !   57.4   8.4   1.1e-19     2e-15       3     119 ..      54     169 ..      48     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.13
  SNARE_assoc 66 ygflallllrllpi 79
                 +g+l+l+l+ ++  
   CDO68714.1 34 FGWLILFLVFFIIS 47
                 56666666666654 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 1.1e-19
  SNARE_assoc   3 sevllvaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvn.yvaGltrvsfkrF 99 
                  +++l++++G+++g+  g++++++g+l G+ +++++ r l++++lrr+  s+++ +ale  +  +g  +++l+r +p+ P  ++n ++a++ +v +++F
   CDO68714.1  54 HTTLITLCGYAYGM-KGFPIAAAGSLFGSAFTFVVLRLLFNRRLRRWSESNEKWQALETVIATKGLPLIVLIRASPFPPWVYSNtLFASIQSVALWQF 150
                  678899******88.5*************************************************************9999999************** PP

  SNARE_assoc 100 flatfiGsipwalvyaylGs 119
                  flatf+  +p++ +++++Gs
   CDO68714.1 151 FLATFV-VFPKIAIFVFVGS 169
                  ******.8**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1968.76
//
Query:       CDO68715.1  [L=401]
Description: hypothetical protein BN946_scf184652.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-13   49.8   2.0    3.1e-13   49.8   2.0    2.7  2  Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
    1.4e-06   28.2   0.6    5.4e-05   23.1   0.0    2.3  2  SNARE          SNARE domain
  ------ inclusion threshold ------
      0.042   13.4   1.2      0.098   12.2   0.6    1.8  2  ComR_TPR       ComR tetratricopeptide
        2.8    7.2  15.5        0.1   11.9   4.4    2.5  3  DUF3450        Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   2.0   6.9e-17   3.1e-13       5      84 ..       8     116 ..       6     117 .. 0.67
   2 ?   -0.4   0.4      0.32   1.4e+03      20      59 ..     296     335 ..     262     365 .. 0.69

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 6.9e-17
  Syntaxin-18_N   5 plFkasVktvk.a..sssskseekeakkrkkkrlkkskekdeFikeAkei.lkhItkLrkfLleirkaYlnv..rshl.................. 76 
                    ++F+++V+++k a  +++  + ++++k++  ++++ ++ ++e++keA+ + l+hI++L ++L+ +rkaYlnv  rs l                  
     CDO68715.1   8 SEFRELVREKKkAvpEAKRRKLSRTSKRSTPESERLEALNKEYVKEAYAVqLNHINTLARMLVAVRKAYLNVdsRSPLmlrptnrtidisgenqpw 103
                    68********7523333333333333344444444445566********989********************855545666666666666666666 PP

  Syntaxin-18_N  77 .....mtdqerdn 84 
                         +t++erd+
     CDO68715.1 104 selrnLTNEERDQ 116
                    6666666666665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.32
  Syntaxin-18_N  20 skseekeakkrkkkrlkkskekdeFikeAkeilkhItkLr 59 
                    s+s+ ++ +++++++l++ +++   +++A + l  I+ L+
     CDO68715.1 296 SASQIQQFEEENANILQSVQNTLASVQQAESRLVEISALQ 335
                    4455555556666666666666666666666666666665 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.02        90       6      26 ..     310     330 ..     308     335 .. 0.86
   2 !   23.1   0.0   1.2e-08   5.4e-05      13      51 ..     359     397 ..     354     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHH CS
       SNARE   6 IdtnVenaqsnveraqkeLkk 26 
                 I ++V+n+   v++a ++L+ 
  CDO68715.1 310 ILQSVQNTLASVQQAESRLVE 330
                 6689**************975 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXX CS
       SNARE  13 aqsnveraqkeLkkavkyqksnRklkciillilviillv 51 
                 + s ve+++++L+ a++++++ Rk+  i+l+ + + ll+
  CDO68715.1 359 TASMVEKGNEQLREARRRARDGRKWILIFLIGASLSLLF 397
                 7788**************************987766665 PP

>> ComR_TPR  ComR tetratricopeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.38   1.7e+03     109     154 ..      38      83 ..      30      94 .. 0.78
   2 ?   12.2   0.6   2.2e-05     0.098     155     212 ..     306     364 ..     289     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.38
                 H..HHHHHHHHHHHHHTTTS-GGGHHHHHHHHHHHHHHHHHTT--T CS
    ComR_TPR 109 fdkklfeklvekllnqeesleeedlfllrdvllsaltvllklkeye 154
                  +++ +e l ++ ++    ++ +++ +l ++l+++   +l++++ +
  CDO68715.1  38 PESERLEALNKEYVKEAYAVQLNHINTLARMLVAVRKAYLNVDSRS 83 
                 5667778888888899999999999999999999888888877655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.2e-05
                 THHHHHHHHHHHHHHHT-.-TTHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHTT CS
    ComR_TPR 155 klekllkvlnkimektqd.fqkkpivlmlewKyylkvkkdiekAkelYqkAilfakllg 212
                 +  ++l+ +++ +++ q+  ++ + +  l+   + ++ k+ e++++lY++Ai+ a++++
  CDO68715.1 306 ENANILQSVQNTLASVQQaESRLVEISALQMELVAHLTKQTEQTEQLYEDAIATASMVE 364
                 3345555555555555550566777999*****************************96 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.74   3.3e+03      45      71 ..      25      51 ..      12      73 .. 0.62
   2 ?    3.2   0.3    0.0099        45      25      74 ..     100     149 ..      85     171 .. 0.84
   3 ?   11.9   4.4   2.2e-05       0.1      33     115 ..     275     355 ..     249     377 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.74
     DUF3450 45 ekqellaeyralkeeleslevyneqle 71
                ++++l++  ++ + e e+le+ n+++ 
  CDO68715.1 25 KRRKLSRTSKRSTPESERLEALNKEYV 51
                555666666666666666766666543 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0099
     DUF3450  25 aekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlv 74 
                  + + + +  ++++ d++d +++ +l++ ++  ++le+le+ +++l+ ++
  CDO68715.1 100 NQPWSELRNLTNEERDQIDLQARVILSRCNDRVAQLEELEKRRAELAVSQ 149
                 566777888899999**************999999999999999887655 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 2.2e-05
     DUF3450  33 aqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeqfvel 115
                  ++++  d++  e++  ++e++   +++++ e +n++  ++v++  +++++ e ++ ei+++++elv  l k  ++ eq++e 
  CDO68715.1 275 PSISAARDDWMSETD--EEELELSASQIQQFEEENANILQSVQNTLASVQQAESRLVEISALQMELVAHLTKQTEQTEQLYED 355
                 555666677776666..5677778899****************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1902  (0.106085); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2718.60
//
Query:       CDO68716.1  [L=77]
Description: hypothetical protein BN946_scf184652.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-19   68.8   0.0    2.6e-19   68.6   0.0    1.0  1  LSM       LSM domain
  ------ inclusion threshold ------
       0.03   13.9   0.0      0.042   13.5   0.0    1.2  1  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   2.9e-23   2.6e-19       2      66 ..       8      71 ..       7      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 2.9e-23
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                 lkk+++kk+ v l++gr+++GtL+g+D f+Nlv++d+ e  +   +k+ +g+v+iRGn++++++
  CDO68716.1  8 ELKKFMDKKLFVHLQGGRKVSGTLRGYDLFLNLVIDDALEETNPA-QKHPIGTVVIRGNSVTSME 71
                69**************************************99999.***************9985 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.7e-06     0.042      15      58 ..      16      61 ..       9      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-06
                EEEEEETTS-EEEEEEEEE-SSEEEEEETT..EEEEEEGGGEEEEE CS
         Hfq 15 pvtifLvnGiklkGviksfDnftvlLesdg..kqqlvYKhaistiv 58
                ++ ++L  G k++G+++++D f  l+ +d+  +++   Kh i t+v
  CDO68716.1 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDDAleETNPAQKHPIGTVV 61
                5789******************977756552236667788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 590.95
//
Query:       CDO68717.1  [L=576]
Description: hypothetical protein BN946_scf184652.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 3582.34
//
Query:       CDO68718.1  [L=443]
Description: hypothetical protein BN946_scf184652.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-96  323.9   0.1    4.2e-85  286.4   0.0    2.0  2  MDM10     Mitochondrial distribution and morphology protein 1
     0.0011   18.4   0.1        1.1    8.6   0.0    3.1  3  Porin_3   Eukaryotic porin


Domain annotation for each model (and alignments):
>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.4   0.0   4.7e-89   4.2e-85       1     326 [.       1     372 [.       1     383 [. 0.87
   2 !   36.3   0.2   3.2e-13   2.9e-09     399     464 ..     382     440 ..     368     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: 286.4 bits;  conditional E-value: 4.7e-89
       MDM10   1 MlefmdYvqkaFeeatnWnrdnsYsnltatsdalldfsiPeglklqlsslstpnfatsytLstvgvidGslsYLyssvpLenlvsqsesipLqdlvrgY 99 
                 M  f  Yv +++++ t+Wn+dn Y+nlt++s+alldfs+P+gl++++s    + f t+y+++++ +++Gs+ Y+++s++L+  v+ s +++ +d+v+ +
  CDO68718.1   1 MHPFASYVLRSYYKQTGWNEDNLYANLTRSSNALLDFSVPRGLHFSISKSPNSLFKTTYSMNALPSLNGSVGYIFTSCNLD--VKGSGDVRFKDMVDRF 97 
                 889*****************************************************************************9..5668************ PP

       MDM10 100 rqiepllaaelkekeakeeakekkkkksLlygrlylPssaLeAlvikrlspttqlqlkavssqk..........lenggtllallqkdtgkysqellvs 188
                 +   ++  + + ++e+    ++ ++++ Llygr+y P+  L+Al+  r++pt+q +++a+s+++            +++ +++ lq+dtgk+++e+  s
  CDO68718.1  98 KVFDQPR-KPEGKEEEWLGGDRVDTRDYLLYGRIYIPTGRLDALYSTRITPTLQGMVAAISDPRapisseksrgHGPSSNIMFSLQQDTGKWCTEYTWS 195
                 ***9975.677777889999999****************************************99****99999778899999**************** PP

       MDM10 189 tdeaLlGlrglynfGg.......daekkka.............sekasklnsslanns..............iysllSaGaElyygtlskspglStglR 253
                 +++++ G+r lynfG              +                           s               ++++S+G+E+y+++  ks+g+Stg+R
  CDO68718.1 196 AEDGMWGIRSLYNFGRigspaesS-----QndgekaghaptgrR-------------SglkrvdeeeameggLKGRISIGGEFYFSAKEKSAGVSTGIR 276
                 ***************855443330.....223333333443331.............13444444555666699************************* PP

       MDM10 254 faTlsas.......................tgkPltlTltlnPllGsisstYsvkasenstlssrydFNvYSyeSnlslGmeLwrksrkkksseee 326
                 f+T +                         +  P t+T  +nP+lG+is +Y+++ s+ ++l+sr+dFNvYSyeS++s+G e w+++ k ++s + 
  CDO68718.1 277 FTTVPDAtppsfqvpsssttpavqtprgppSQPPTTITALFNPMLGHISGAYTARVSRDLSLASRFDFNVYSYESEWSIGAEWWQRRGKVRASPSP 372
                 *****66666677777778888888888889999**************************************************999876655444 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 3.2e-13
       MDM10 399 kkeeeefssVlKarldqdlnvkllWeGrvkslLvsaGvelslkkleksselklksfrklGleiqYs 464
                 ++ ++e+++V+Ka+++  + ++llWeGr+++ Lvs+Gv  +l++ +       k+++++Gle++Y 
  CDO68718.1 382 SDLADEVQGVVKAKVSTTTDISLLWEGRLRNVLVSLGVVSNLSNRS-------KPIKSIGLELSYF 440
                 567899********************************99988777.......78999*****994 PP

>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.023   2.1e+02       5      72 ..      24      85 ..      22      92 .. 0.77
   2 !    8.6   0.0   0.00012       1.1     145     232 ..     254     368 ..     249     369 .. 0.72
   3 !    4.4   0.0    0.0024        22     229     257 ..     391     418 ..     385     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.023
                CCCCCHHHHHHHHCCHTTTECEEEEEEEECCECCEEEEEEEETTTS-ECEEEEEEEEETCCCEEEEEE CS
     Porin_3  5 yedlgkeakdllpkdYhfeglkldvtkktslgvaFqvshsfslgsgkvsysfeakykdkgltltlkgn 72
                y++l+++ + ll       gl+++++k  s +  F+++ s +    + ++s++  ++    +l++kg+
  CDO68718.1 24 YANLTRSSNALLDFS-VPRGLHFSISK--SPNSLFKTTYSMNA-LPSLNGSVGYIFT--SCNLDVKGS 85
                888999998888766.789999*****..99999999998883.4467777777777..777777776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00012
                 EEEEEEEEEECTTTCCEEEEEEEEEEEC.............................SEEEEEEEEETTTEEEEEEEEECCTTEEEEEEEEEETTEEEE CS
     Porin_3 145 lalGaeavydtasgkltkyaaalsyaar.............................dwiaslqllnnggaltasyyqkvsekvevgaeltlnassqes 214
                 +++G+e+ ++ ++++++  ++++ +++                               +++++  +   g ++++y  +vs ++++++ +  n+ s es
  CDO68718.1 254 ISIGGEFYFSAKEKSAG-VSTGIRFTTVpdatppsfqvpsssttpavqtprgppsqpPTTITALFNPMLGHISGAYTARVSRDLSLASRFDFNVYSYES 351
                 56666666666654444.3333444443666666666666666666666677777776777777789999***************************** PP

                 EEEEEEEEEECTCEEEEE CS
     Porin_3 215 tttlGakydldksttvka 232
                 + ++Ga +  +    v+a
  CDO68718.1 352 EWSIGAEWWQRRG-KVRA 368
                 ******9977777.6666 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0024
                 EEEEEEECTTEEEEEEEEEECTTEEEEEE CS
     Porin_3 229 tvkakidsngkvgllleqkLrpgvtltls 257
                 +vkak++++  ++ll+e +Lr  v ++l+
  CDO68718.1 391 VVKAKVSTTTDISLLWEGRLRN-VLVSLG 418
                 8******************963.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3329.91
//
Query:       CDO68719.1  [L=1722]
Description: hypothetical protein BN946_scf184652.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   61.2   0.0      2e-16   60.3   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
    1.5e-12   47.9   0.0    1.2e-11   44.9   0.0    2.2  2  ResIII      Type III restriction enzyme, res subunit
    1.6e-05   25.2   0.0    3.6e-05   24.1   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   3.4e-20     2e-16       3     170 ..     727     883 ..     725     888 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 3.4e-20
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdi 100
                  Q+++++++ ++++vlvaa+T +GKT +   ++ + +   ++++    ++v+Pt++L+ q++ ++  ++ + ++ ++++ i+  ++r  + +  ++++i
  CDO68719.1 727 WQRKVLDCLDRNESVLVAAPTSAGKTFISYYAMEKLL---RSSDDDILVYVAPTKALVSQIAAEVYARFRKeLNGKACWAIHTRDYR--VHNP-QNCQI 819
                 59999**********************9777666555...4788889***************9997777654777888777755543..3333.67*** PP

                 EEEEHHHHHHHH.....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddll.....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +v+ p++l+ +l        k  + +++ ++lDE++++ +q+ +  +++i+   p      +    +i lSAT+ 
  CDO68719.1 820 LVTVPEMLATMLlspplA--KTWTPRIKRIILDEIHTIGQQEGGAVWEQIILLAP-----CP----LIGLSATIG 883
                 **********88666431..33389999*********************988883.....33....999999986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     2e-15   1.2e-11      15     169 ..     731     882 ..     707     884 .. 0.81
   2 ?   -0.4   0.1      0.17     1e+03      47     118 ..    1073    1138 ..    1065    1153 .. 0.61

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2e-15
                 HT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG.GGGTGG....GEEEESSS-B--.......-SEEEEEHH CS
      ResIII  15 lleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef.kkflseaykeigkkvsgdkkkakekdstnkkilvttiq 112
                 +l+ l  +r++ +l++++T +GKT++++ ++e+ll++ + +  + ++p+k+l++q   e+ ++f +e + +++  ++ + ++   ++ +n++ilvt  +
  CDO68719.1 731 VLDCL--DRNESVLVAAPTSAGKTFISYYAMEKLLRSSDDDILVYVAPTKALVSQIAAEVyARFRKELNGKACWAIHTRDYRV--HNPQNCQILVTVPE 825
                 44444..6999*********************************************955515555554444777788888877..899*********** PP

                 HHHHTH........HHHTTT-S...EEEEETGGGTTS.T...TTHHHHHT---SEEEEEESS- CS
      ResIII 113 sldadseeeeeeseellrdrfd...viiiDEaHrlgakk...swreilekfkeavllglTATp 169
                 +l   +      s  l ++  +    ii DE H +g+++    w++i+    ++ l+gl+AT+
  CDO68719.1 826 MLATML-----LSPPLAKTWTPrikRIILDEIHTIGQQEggaVWEQIILL-APCPLIGLSATI 882
                 ***999.....333333332225559***********94555****9777.67*********7 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.17
                  HH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII   47 rllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118 
                   l+ +g+   +l++   ++++e++ +++ ++l++a ++    +++ + +  +++ +++++ v++ ++  ++ 
  CDO68719.1 1073 DLHANGDL-PALLFTFDRTICERMAQNILDVLEKAEAK----WRETNSEW-KRKVKQWELWVSKAKERERQA 1138
                  55555444.56777777889999999999999998655....33333333.333456777766665555554 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     6e-09   3.6e-05      40     111 .]    1210    1282 ..    1187    1282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6e-09
                  TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS.HHHHHHHHTTSSSTT CS
  Helicase_C   40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn.vtsyiqriGRtgRag 111 
                     + v+h+ +++  r  + + +++g  +v+iat  ++ Gi+ p  + V+  d p+     y q +GR+gR g
  CDO68719.1 1210 RRGIGVHHSGMNKHYRTLVESLYRSGFLRVVIATGTLALGINAPTKTSVFCGDSPYLtALMYRQCAGRAGRRG 1282
                  4567889************************************************652789**********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 11113.47
//
Query:       CDO68720.1  [L=365]
Description: hypothetical protein BN946_scf184652.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-48  163.9   3.8    4.8e-48  163.7   3.8    1.0  1  Pex2_Pex12    Pex2 / Pex12 amino terminal region
    5.2e-07   29.4   1.0    7.9e-07   28.8   1.0    1.3  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    1.5e-06   28.0   0.6    2.2e-06   27.4   0.6    1.2  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00032   21.0   0.8    0.00051   20.3   0.8    1.3  1  zf-RING_2     Ring finger domain
  ------ inclusion threshold ------
      0.013   15.4   0.7      0.019   14.8   0.7    1.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.044   13.9   1.8      0.075   13.2   1.8    1.3  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.13   12.3   2.1       0.22   11.6   2.1    1.4  1  zf-RING_UBOX  RING-type zinc-finger


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   3.8   1.9e-51   4.8e-48       1     224 [.      22     274 ..      22     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.9e-51
  Pex2_Pex12   1 deelesllkpalryilrllagqrfp.....ilnyfdEikllldlllelltlksgngTfgeefygLkrv............ssselkkrrllskrqrlls 82 
                 +e+l++ll+pal+y+l ++ +q++p     i+n+++E+++ll++++e+++l++ +++f e+fygLkr+            ++  +   ++l++r  + s
  CDO68720.1  22 QEQLRDLLQPALKYVLSVF-AQSYPryllrIVNRHEEFYALLMFFVERHYLRTQGASFAENFYGLKRRrvplfkidrartAAGGVFPEEKLRDREIWRS 119
                 79***************87.888888******************************************88888887777766777777*********** PP

  Pex2_Pex12  83 llllvlipYlkekldely.sarerysaealsd.earnsreslkkrlkrlllklypfiealyellnlvlqllYL..sgkyysllkrllgiryvrlnpadq 177
                 l++lv++pY++ k++ ++ +     ++e ++d ++   +es k rlkr  + +yp++++ +e + l+++++YL   ++yy +++  +g+ ++r +  d 
  CDO68720.1 120 LVFLVGLPYIRAKAQDYFeELGGGIQTEIIEDsRQAPLDESWKGRLKRAYKTAYPWLNTSFEMWLLIYNVAYLfeRTPYYRPWLSWVGVDLRRVSADDL 218
                 ******************644444444444447999999************************************************************ PP

  Pex2_Pex12 178 rrnarrpsye..........ylnrqllwnalkellgllllllllsvfllkllewwys 224
                  r+a+  +ye           + ++l+++  + ll++l +ll++++f+ k+lewwys
  CDO68720.1 219 -RAAQAGRYEstrpppkgfvAMLKHLMRRSPRLLLDSLKVLLPTAIFFIKFLEWWYS 274
                 .99999999999999*9*99************************************8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.0   3.1e-10   7.9e-07       2      39 ..     314     350 ..     313     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.1e-10
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPl 39 
                 C++C d l+++ + +p g vfC+ C + + e++ +CP+
  CDO68720.1 314 CALCRDTLSNA-TAFPSGYVFCYRCAHDYVEKHGRCPV 350
                 **********8.9************************7 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.6   8.6e-10   2.2e-06       3      42 ..     312     350 ..     310     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 8.6e-10
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TT CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpi 42 
                   C +C ++ +n++  p g++ +C++Ca ++ +++ +Cp+
  CDO68720.1 312 GSCALCRDTLSNATAFPSGYV-FCYRCAHDYVEKHGRCPV 350
                 68*******************.*****************7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.8     2e-07   0.00051       2      42 ..     313     350 ..     312     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2e-07
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPl 42 
                 +C++C + ls+a   +    g+vf++ C+ ++++++ +CP+
  CDO68720.1 313 SCALCRDTLSNATAFP---SGYVFCYRCAHDYVEKHGRCPV 350
                 7*****9998766666...47*******************6 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.7   7.6e-06     0.019       1      39 [.     314     349 ..     314     350 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.6e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCP 39 
                 C++C +++++++ + + +  fC+ C   +++  k+  CP
  CDO68720.1 314 CALCRDTLSNAT-AFPSGYVFCYRCAHDYVE--KHGRCP 349
                 ************.******************..888899 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.8   2.9e-05     0.075       1      32 [.     314     345 ..     314     350 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkep 32 
                 C  C+d L++ +  + G++fC +C   + ++ 
  CDO68720.1 314 CALCRDTLSNATAFPSGYVFCYRCAHDYVEKH 345
                 99**********************99998775 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   8.5e-05      0.22       1      39 []     314     349 ..     314     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-05
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreClwelskslegafkCP 39 
                   C  C++++++     p G +FC +C    ++  e++ +CP
    CDO68720.1 314 CALCRDTLSNA-TAfPSGYVFCYRCA---HDYVEKHGRCP 349
                   99*******99.5339**********...89999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2533.85
//
Query:       CDO68721.1  [L=1078]
Description: hypothetical protein BN946_scf184652.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-38  131.8   0.1    2.3e-11   44.1   0.0    4.4  4  Ank_2     Ankyrin repeats (3 copies)
    1.2e-32  111.8   1.5    4.4e-09   36.7   0.0    5.0  5  Ank_4     Ankyrin repeats (many copies)
    2.3e-25   85.8   7.0    0.00061   20.1   0.0    8.0  8  Ank_3     Ankyrin repeat
    4.1e-24   86.2   7.2    6.3e-08   32.9   0.0    3.3  3  SPX       SPX domain
    4.3e-23   81.1   8.7    1.7e-05   25.0   0.0    6.9  7  Ank_5     Ankyrin repeats (many copies)
    4.5e-21   74.3   6.2        0.1   13.1   0.0    7.7  7  Ank       Ankyrin repeat
    3.3e-13   50.0   0.0    5.8e-13   49.2   0.0    1.4  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.1e-12   1.3e-08      11      76 ..     298     377 ..     288     384 .. 0.74
   2 !   35.9   0.0   3.2e-12   8.3e-09      25      77 ..     386     446 ..     376     452 .. 0.84
   3 !   44.1   0.0   9.1e-15   2.3e-11      24      83 .]     452     517 ..     446     517 .. 0.88
   4 !   12.7   0.0   5.5e-05      0.14      50      77 ..     517     544 ..     514     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.1e-12
       Ank_2  11 elvklLl....egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekg 76 
                 +l +l+l    + +d    +  ng+t Lh Aa++g l +v l l+       +d +gr++LhyAa +gh ++++ L+e g
  CDO68721.1 298 DLADLILastvSPFDYTfvDdiNGRTCLHEAAIAGILRLVDLCLAGgvqkdkTDAYGRSALHYAAMHGHGDVCRRLIEVG 377
                 55666664322223332442479*********************944555777899********************9866 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 3.2e-12
       Ank_2  25 ngktaLhyAakngnleivklLleh....ad....ndgrtpLhyAarsghleivklLlekga 77 
                 ++ t+L+yA+ +g++++vk+Lle     ++    n+   pL +Aar gh+++v lLle+ga
  CDO68721.1 386 DNCTPLIYATLKGCVDCVKALLESgnvsVRtlhsNTDLMPLSLAARAGHIDVVVLLLEHGA 446
                 579*******************96667722456788889*******************997 PP

  == domain 3  score: 44.1 bits;  conditional E-value: 9.1e-15
       Ank_2  24 kngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +ng+ ++h+Aa++g+  ++++L  +      d ++ +tpL++Aar+g++e++++Lle g+ i ++d
  CDO68721.1 452 TNGEYPIHLAAQEGHAAVCRILSRQegwdqPDkYNEWTPLFHAARFGRYECLQVLLEVGCRISVTD 517
                 489************999*****9778555448889********************99**999887 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 5.5e-05
       Ank_2  50 dndgrtpLhyAarsghleivklLlekga 77 
                 d++g++p++yAa++gh  +v lL+e  a
  CDO68721.1 517 DESGNSPIYYAAWYGHRSCVALLVEAAA 544
                 5789999*****9999999999998755 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.3e-05      0.06       3      46 ..     286     332 ..     284     339 .. 0.87
   2 !   33.4   0.2   1.9e-11   4.8e-08       1      55 []     321     374 ..     321     374 .. 0.95
   3 !   33.3   0.0     2e-11   5.1e-08       2      55 .]     355     407 ..     354     407 .. 0.97
   4 !   22.7   0.0   4.1e-08   0.00011       5      52 ..     426     471 ..     424     473 .. 0.87
   5 !   36.7   0.0   1.7e-12   4.4e-09       2      55 .]     488     540 ..     487     540 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgad.inaq..dnrsGetalhiAakrg 46 
                 ++L +a+i+ + +l++l+l++ ++  +++  d+++G+t+lh Aa  g
  CDO68721.1 286 RILWKAVIDAPPDLADLILASTVSpFDYTfvDDINGRTCLHEAAIAG 332
                 6899***************986555888899************9776 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 1.9e-11
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++t+Lh aai+g l+lv+l+l+ g++ +++ +++G++alh+Aa++g+ ++ + L+
  CDO68721.1 321 GRTCLHEAAIAGILRLVDLCLAGGVQKDKT-DAYGRSALHYAAMHGHGDVCRRLI 374
                 58*******************999*999*9.*****************9998886 PP

  == domain 3  score: 33.3 bits;  conditional E-value: 2e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++aLhyaa++g+ +++r+L+e g  ++ + + +  t+l++A ++g v+++k Ll
  CDO68721.1 355 RSALHYAAMHGHGDVCRRLIEVGLPPDVV-DVDNCTPLIYATLKGCVDCVKALL 407
                 89***************************.**********************98 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 4.1e-08
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilk 52 
                 L  aa +g++++v lLle+ga     +n +Ge ++h Aa+ g+  + +
  CDO68721.1 426 LSLAARAGHIDVVVLLLEHGAP--SLPNTNGEYPIHLAAQEGHAAVCR 471
                 667999**************97..56699*************977765 PP

  == domain 5  score: 36.7 bits;  conditional E-value: 1.7e-12
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+L++aa +gr+e+++ Lle g  i  + ++sG++++++Aa+ g+ +++ lL+
  CDO68721.1 488 WTPLFHAARFGRYECLQVLLEVGCRISVT-DESGNSPIYYAAWYGHRSCVALLV 540
                 79**************************9.********************9996 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         7   1.8e+04       6      23 ..     288     305 ..     287     306 .. 0.82
   2 !   11.6   0.0   0.00013      0.34       1      27 [.     320     345 ..     320     348 .. 0.92
   3 !   20.1   0.0   2.4e-07   0.00061       1      29 [.     353     380 ..     353     382 .. 0.88
   4 !    9.2   0.0   0.00081       2.1       2      29 ..     387     414 ..     386     416 .. 0.87
   5 !   13.0   0.1   4.7e-05      0.12       5      27 ..     425     446 ..     422     448 .. 0.92
   6 !    8.5   0.0    0.0014       3.5       1      23 [.     453     475 ..     453     480 .. 0.86
   7 !   17.2   0.0     2e-06     0.005       1      28 [.     486     512 ..     486     515 .. 0.88
   8 ?    1.7   0.0      0.22   5.6e+02       2      23 ..     520     541 ..     519     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7
       Ank_3   6 LhlAarsgnleivkfLle 23 
                 L  A+  +++++++++l 
  CDO68721.1 288 LWKAVIDAPPDLADLILA 305
                 678999999999998875 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 nG+t Lh+Aa +g l +v+++l   g+
  CDO68721.1 320 NGRTCLHEAAIAGILRLVDLCLA-GGV 345
                 7*********************9.665 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 2.4e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+++Lh+Aa++g+ ++++ L+e  g ++
  CDO68721.1 353 YGRSALHYAAMHGHGDVCRRLIE-VGLPP 380
                 79*********************.56655 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00081
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 ++tpL +A + g+++ vk+Lle  ++ v
  CDO68721.1 387 NCTPLIYATLKGCVDCVKALLESGNVSV 414
                 79********************766655 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 4.7e-05
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 pL lAar+g++++v +Lle +ga
  CDO68721.1 425 PLSLAARAGHIDVVVLLLE-HGA 446
                 99*****************.887 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0014
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nGe+p+hlAa  g+ ++++ L +
  CDO68721.1 453 NGEYPIHLAAQEGHAAVCRILSR 475
                 79**************9988876 PP

  == domain 7  score: 17.2 bits;  conditional E-value: 2e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 n +tpL++Aar+g++e ++ Lle  g+ 
  CDO68721.1 486 NEWTPLFHAARFGRYECLQVLLE-VGCR 512
                 579********************.6775 PP

  == domain 8  score: 1.7 bits;  conditional E-value: 0.22
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G++p+++Aa +g+ + v +L+e
  CDO68721.1 520 GNSPIYYAAWYGHRSCVALLVE 541
                 9*************98888877 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.5e-11   6.3e-08       1      35 [.       1      35 [.       1      58 [. 0.82
   2 !   25.4   0.6   4.8e-09   1.2e-05     151     217 ..      54     111 ..      35     137 .. 0.73
   3 !   31.2   0.1   8.4e-11   2.2e-07     345     381 ..     147     183 ..     126     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.5e-11
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqre 35
                M F+k+ +++ vp W + YldYk+LKK I  +++ 
  CDO68721.1  1 MQFGKQIQAEQVPGWSAYYLDYKALKKIISSLVAN 35
                99****************************99983 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 4.8e-09
         SPX 151 ssspsllrrlfsesesreeksersyetrplraekeFferLdseLnkvetFykakeeefterlesLrk 217
                 s++p+l  +l      ++++ + s++     ++++Ff  L  eL+k++ Fy +ke e+  rle+L +
  CDO68721.1  54 SEEPPLYASL-----GQDDDRGPSFQ----AHKAAFFFKLERELEKINAFYLEKEAELKLRLETLLS 111
                 3444444444.....33444444444....4********************************9965 PP

  == domain 3  score: 31.2 bits;  conditional E-value: 8.4e-11
         SPX 345 rgLelLKsYqeLNrtAFrKIlKKfDKvtaltaskrym 381
                 r+  +L+++ e+N ++FrKIlKK+DK++  t+++ y+
  CDO68721.1 147 RDIGKLQQFVEINAMGFRKILKKWDKRSRSTTKELYL 183
                 56789***************************99997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   6.2e-05      0.16      14      56 .]     319     361 ..     315     361 .. 0.93
   2 !   24.4   0.1     1e-08   2.6e-05      11      56 .]     349     394 ..     341     394 .. 0.92
   3 !   14.7   0.0   1.2e-05      0.03       1      36 [.     373     407 ..     373     416 .. 0.89
   4 !   13.1   0.1   3.5e-05      0.09      15      40 ..     422     446 ..     406     448 .. 0.78
   5 !   25.0   0.0   6.6e-09   1.7e-05       1      53 [.     441     491 ..     441     491 .. 0.90
   6 !   19.7   0.0   3.1e-07    0.0008       8      54 ..     480     525 ..     476     526 .. 0.87
   7 !   17.4   0.0   1.6e-06    0.0042       7      45 ..     511     547 ..     506     556 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                  +g t+Lh Aa +g +++v l+la g+  + td++G++al++A
  CDO68721.1 319 INGRTCLHEAAIAGILRLVDLCLAGGVQKDKTDAYGRSALHYA 361
                 4566**************************************9 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1e-08
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                  +d +g ++Lh+Aa +g+ dv+r+L++ g+ +++ d ++ t+l +A
  CDO68721.1 349 KTDAYGRSALHYAAMHGHGDVCRRLIEVGLPPDVVDVDNCTPLIYA 394
                 5777899*************************************99 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.2e-05
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLl 36 
                 L+e g p dv + d++  tpL++A  +g+ d+v+ Ll
  CDO68721.1 373 LIEVGlPPDVVDVDNC--TPLIYATLKGCVDCVKALL 407
                 56778899********..******************9 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 3.5e-05
       Ank_5  15 ggntpLhvAakygaadvvrlLlarga 40 
                 +   pL +Aa++g+ dvv lLl++ga
  CDO68721.1 422 D-LMPLSLAARAGHIDVVVLLLEHGA 446
                 2.29******************9997 PP

  == domain 5  score: 25.0 bits;  conditional E-value: 6.6e-09
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.ltal 53 
                 Llehg p  +n++   g+ p+h+Aa  g+a v+r+L  r++ +++ d+++ +t+l
  CDO68721.1 441 LLEHGaPSLPNTN---GEYPIHLAAQEGHAAVCRILS-RQEGWDQPDKYNeWTPL 491
                 89**966666664...559******************.****************8 PP

  == domain 6  score: 19.7 bits;  conditional E-value: 3.1e-07
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 d  ++ +++ tpL +Aa+ g+ +++++Ll+ g+ + +td++G++++ 
  CDO68721.1 480 DQPDKYNEW-TPLFHAARFGRYECLQVLLEVGCRISVTDESGNSPIY 525
                 555566666.**********************************986 PP

  == domain 7  score: 17.4 bits;  conditional E-value: 1.6e-06
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                 +++  +d+ gn+p+ +Aa+yg+ ++v lL+  +a+++++
  CDO68721.1 511 CRISVTDESGNSPIYYAAWYGHRSCVALLV--EAAARAQ 547
                 6677899**********************9..5555554 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.013        33       1      20 [.     320     336 ..     320     346 .. 0.75
   2 !   13.1   0.0   3.9e-05       0.1       1      24 [.     353     377 ..     353     385 .. 0.81
   3 !   13.0   0.0   4.4e-05      0.11       1      30 [.     386     415 ..     386     417 .. 0.86
   4 !   10.8   0.2   0.00021      0.53       5      27 ..     425     447 ..     424     452 .. 0.89
   5 !    9.9   0.0   0.00042       1.1       1      21 [.     453     473 ..     453     478 .. 0.91
   6 !    8.2   0.0    0.0014       3.7       1      25 [.     486     511 ..     486     518 .. 0.80
   7 !    9.4   0.0    0.0006       1.5       2      22 ..     520     540 ..     519     549 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
                 TSBBHHHHHHHHTTHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriikl 20 
                 +G+T+LH Aa  g   i++l
  CDO68721.1 320 NGRTCLHEAAIAG---ILRL 336
                 7******998666...6653 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.9e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hG 24 
                 +G+++LH+Aa+ g+ ++++ L+  G
  CDO68721.1 353 YGRSALHYAAMHGHGDVCRRLIeVG 377
                 69********999999999998335 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 4.4e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 d +TPL +A   g ++++k+LL +G n+  +
  CDO68721.1 386 DNCTPLIYATLKGCVDCVKALLeSG-NVSVR 415
                 679*****998888********989.98766 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00021
                 HHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   5 PLHlAatngkkriiklLL.hGAnl 27 
                 PL lAa+ g+ +++ lLL hGA +
  CDO68721.1 425 PLSLAARAGHIDVVVLLLeHGA-P 447
                 999******************8.4 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00042
                 TSBBHHHHHHHHTTHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklL 21 
                 +G +P HlAa++g++ +++ L
  CDO68721.1 453 NGEYPIHLAAQEGHAAVCRIL 473
                 79***************9966 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0014
                 TSBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGA 25 
                 + +TPL  Aa++g  ++++ LL  G+
  CDO68721.1 486 NEWTPLFHAARFGRYECLQVLLeVGC 511
                 579******************95463 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.0006
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 Gn+P  +Aa++g+ +++ lL+
  CDO68721.1 520 GNSPIYYAAWYGHRSCVALLV 540
                 9*****************998 PP

>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.3e-16   5.8e-13      26     201 ..     812     994 ..     799    1066 .. 0.74

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.3e-16
                 EEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTST.....ECCTTCCCCSCCCSSGCC..B...BHHHHHHH..HHHCCSEEEEEEEC CS
        GDPD  26 yiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrld.....kiakenkaqlsenrvrle..fpfptleevlkk..pqnvglnieikipm 115
                 yi + vq+T+D  pV++ D +l +   + g   v+d+tl+++++l+      ++    a++s++   ++  ++ +tl+++l+   p++ g+ iei + +
  CDO68721.1 812 YIYVTVQVTRDLLPVIFADWKLLDNQYDLG---VSDVTLAQFRSLAkrlgrGAGVPDAASASPSVWARWisSSMITLQDLLRQlvPASYGICIEIAYAP 907
                 566669*************77766666667...8************8777644444445555555555599**************************** PP

                 CCCCCCHHHHHHTCHHHCCCCCSCHH......TT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.......EECHCCCCCCCTCC CS
        GDPD 116 lseakeeeelqivkeilksvdeilkk......vlkkadkrkvifssfnpdilkllrekqpklpllflteggteaead......ssleraakfakadal 201
                 l    ++ + +++ +++ + + +l        +  ++  r v+f+sf pdi+ +l+ kqp++p+++ ++ g++++a+      +           d++
  CDO68721.1 908 LRVRRRHSL-RHQLDLNDVANSVLRTvydtlsLEGQMARRPVVFTSFAPDICAALNWKQPNYPVFLASQCGEYSRAPpsatalN----------IDDV 994
                 ****99999.677777777777765533344445567899********************************999995443330..........3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7350.49
//
Query:       CDO68722.1  [L=610]
Description: hypothetical protein BN946_scf184652.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-22   79.5   0.0    6.7e-22   78.5   0.0    1.5  1  ABC_tran         ABC transporter
    1.7e-08   34.7   0.0     0.0014   18.5   0.0    2.3  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    4.6e-05   23.0   0.2       0.12   11.8   0.0    2.3  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00089   19.1   0.0        1.2    8.8   0.0    2.1  2  AAA_15           AAA ATPase domain
    0.00091   19.5   0.7       0.63   10.3   0.1    3.5  3  AAA_22           AAA domain
     0.0024   16.6   0.0       0.17   10.5   0.0    2.1  2  AAA_13           AAA domain
  ------ inclusion threshold ------
      0.025   14.8   0.0       0.13   12.5   0.0    2.3  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.03   14.5   0.3       0.55   10.4   0.0    2.5  2  AAA_33           AAA domain
      0.031   14.8   0.0      0.096   13.2   0.0    1.9  1  AAA_18           AAA domain
      0.034   13.4   0.0      0.071   12.4   0.0    1.4  1  Zeta_toxin       Zeta toxin
       0.06   13.1   0.0       0.15   11.8   0.0    1.6  1  E3_UbLigase_EDD  E3 ubiquitin ligase EDD
       0.11   12.3   0.1       0.26   11.0   0.1    1.6  1  AAA_29           P-loop containing region of AAA domain
       0.11   12.7   0.2       0.46   10.7   0.2    2.0  1  AAA_28           AAA domain
       0.13   11.9   0.0       0.62    9.7   0.0    2.0  2  SRP54            SRP54-type protein, GTPase domain
       0.17   12.0   0.0        7.1    6.7   0.0    3.0  4  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   5.6e-25   6.7e-22       1     137 []     359     533 ..     359     533 .. 0.86

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 5.6e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 l+ v+l++++ge vaivG nG+GK+tL k+l++  +   Geil++g d+++ + + +++++  ++q  +  +++ v+ n         ++++ ++ a++
  CDO68722.1 359 LRSVDLTVSAGEAVAIVGCNGSGKTTLSKVLLRIIDFGDGEILVNGIDIRRYRPQDYHAHVTAVFQGFSKLSTS-VQGNvgvgyvpgmYDTDSVQSAID 456
                 6789***************************************************************5555544.89999********66677777777 PP

                 HSTTGG..........................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTS....SEEEEESTTT CS
                 xxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
    ABC_tran  91 klglke..........................lkdtvvksspssLSgGqkqrvalarallkkp....kllllDEpta 137
                   g ++                           +   v ++p+ LSgG++qr+a+ ra+++++    +ll++DEpt+
  CDO68722.1 457 LAGADDlvrslpdgvqtildgdvsyhtncegfPASGSVPRKPHGLSGGEWQRIAISRAFMRARrpevQLLVFDEPTS 533
                 777766777777777888888888888888885666677999******************976334479******96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     3e-05     0.036       3      26 ..     373     399 ..     372     435 .. 0.75
   2 !   18.5   0.0   1.2e-06    0.0014     228     297 ..     492     567 ..     445     571 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl...d 26 
                 +++G NgsGK++L + l  + ++    
  CDO68722.1 373 AIVGCNGSGKTTLSKVLLRIIDFgdgE 399
                 79***************9997763220 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.2e-06
      AAA_21 228 dgqelparelSdGtkrllalltallralkkg.sllliDEpEngLHPkllrrllellkelsr.....ngaQviltTH 297
                 +  ++ ++ lS G  + +a+  a+ ra+ +   ll++DEp ++L+ ++++ + + +++ sr     +   v++ TH
  CDO68722.1 492 GSVPRKPHGLSGGEWQRIAISRAFMRARRPEvQLLVFDEPTSSLDAHAQKQFHDTIEQISRdsdgnRTKTVVFITH 567
                 55666777888888888788888888887778************************999999999899999***** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2     0.001       1.2      26      41 ..     371     386 ..     358     395 .. 0.81
   2 !   11.8   0.0   9.8e-05      0.12     136     210 ..     500     580 ..     472     587 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                   aivG NGSGK+ l 
  CDO68722.1 371 AVAIVGCNGSGKTTLS 386
                 679*********9886 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.8e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT......SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn......aQfivislreemlekadklvg 210
                  LSgGe + +a++  f   +     l ++De  + LD++  k++ + +++ s +        ++ i++r  + ++adk+  
  CDO68722.1 500 GLSGGEWQRIAISRAFMRARRPEVQLLVFDEPTSSLDAHAQKQFHDTIEQISRDsdgnrtKTVVFITHRLSTARRADKIAM 580
                 59**************99999999***********************9976654111121346678888888888887755 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0     0.001       1.2      22      48 ..     369     394 ..     358     417 .. 0.78
   2 !    8.2   0.0    0.0015       1.8     311     364 ..     513     567 ..     505     569 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
      AAA_15  22 seeltvliGkNnsGKSsilealdlFln 48 
                  e    ++G N+sGK+++ ++l  +++
  CDO68722.1 369 GE-AVAIVGCNGSGKTTLSKVLLRIID 394
                 44.889************999976665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0015
      AAA_15 311 ileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt....QviitTH 364
                 +++++ +   + +  +l+++EP  +L   aqk++++++  +++d+++     v++ TH
  CDO68722.1 513 RAFMRAR---RPEVQLLVFDEPTSSLDAHAQKQFHDTIEQISRDSDGnrtkTVVFITH 567
                 4444444...66779*****************************99888876666777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.031        37      88     113 ..      16      43 ..       4      59 .. 0.66
   2 !   10.3   0.1   0.00053      0.63       7      26 ..     371     390 ..     366     395 .. 0.85
   3 ?   -0.0   0.0      0.82   9.8e+02      88     133 ..     517     569 ..     507     572 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
      AAA_22  88 aravielliiDEaqh.lrs.eealeeL..r 113
                  ++  ++liiDE+q+ + s + a+++L  r
  CDO68722.1  16 GYS--QALIIDEVQKsVLSgHFAVNQLmrR 43 
                 444..59********643457777777332 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00053
      AAA_22   7 ilvvtGesGtGKTtllrrll 26 
                  ++++G+ G+GKTtl + ll
  CDO68722.1 371 AVAIVGCNGSGKTTLSKVLL 390
                 679************98776 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.82
      AAA_22  88 arav..ielliiDEaqh.lr...s...eealeeLrsllnlsrkgvqliLvGtpel 133
                 ++++  ++ll+ DE    l+   +   ++ +e++++ ++     ++ ++++t+ l
  CDO68722.1 517 RARRpeVQLLVFDEPTSsLDahaQkqfHDTIEQISRDSD--GNRTKTVVFITHRL 569
                 333357899999999998987642456666666655566..88888888888766 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00014      0.17      21      36 ..     374     389 ..     370     404 .. 0.89
   2 ?    3.9   0.0     0.014        16     528     577 ..     524     575 ..     497     590 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
      AAA_13  21 iYGwNGaGKTtLSrll 36 
                 i G NG+GKTtLS++l
  CDO68722.1 374 IVGCNGSGKTTLSKVL 389
                 679***********98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
      AAA_13 528 kivviDDPvSSLDsnslfivfsliksrll..kkkkakQlfiLTHnleffkev 577
                 +  v+D P SSLD+ ++      i++  +  + +  k +   TH l+  + +
  CDO68722.1 524 QLLVFDEPTSSLDAHAQKQFHDTIEQISRdsDGNRTKTVVFITHRLSTARRA 575
                 5689*************99999999999544566789999999999877765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.8   9.3e+03      43      59 ..     306     322 ..     303     331 .. 0.68
   2 ?   12.5   0.0   0.00011      0.13      31      89 ..     499     548 ..     482     549 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.8
     SbcCD_C  43 ylalaaalaalyssaeg 59 
                 ++ l+aa++a+ + +++
  CDO68722.1 306 SIFLMAAFSAARQLRPR 322
                 56788888888776554 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00011
     SbcCD_C  31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  +lSGGe q         a++ ++ +a  r+p ++l+++DE  s+lD++ +++  +++e
  CDO68722.1 499 HGLSGGEWQR-------IAISRAFMRA--RRPEVQLLVFDEPTSSLDAHAQKQFHDTIE 548
                 5667777643.......4566777775..69******************9999887765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.36   4.3e+02      83     121 ..     191     229 ..     174     252 .. 0.77
   2 ?   10.4   0.0   0.00046      0.55       3      21 ..     373     391 ..     372     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.36
      AAA_33  83 rerarflklarrlgvpvrivvvetdeetlkeRlakRaan 121
                 ++++++++la+   ++ +i+ ++  +  l+++ ++R+a 
  CDO68722.1 191 AKQDAMRHLAHSDAFRPEIMLFDLGPWILRSWARARKAL 229
                 577999999999999999999999999999999999874 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00046
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                  +vG +GsGK+tl++ ll+
  CDO68722.1 373 AIVGCNGSGKTTLSKVLLR 391
                 689***********99875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     8e-05     0.096       1      24 [.     372     395 ..     372     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf 24 
                 +++ G+ G+GKttl+k L +   f
  CDO68722.1 372 VAIVGCNGSGKTTLSKVLLRIIDF 395
                 689**************9665444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05     0.071      18      60 ..     371     413 ..     365     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60 
                 ++ ++G  G+GK++l++ l + ++ +++ + +++ d+R++ P+
  CDO68722.1 371 AVAIVGCNGSGKTTLSKVLLRIIDFGDGEILVNGIDIRRYRPQ 413
                 78899***********************************996 PP

>> E3_UbLigase_EDD  E3 ubiquitin ligase EDD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.15      19      48 ..      14      43 ..       5      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
  E3_UbLigase_EDD 19 LqgKSRqvIiRELQrtnLdVNlAVNNLLSR 48
                      +g S  +Ii E Q++ L    AVN L+ R
       CDO68722.1 14 FRGYSQALIIDEVQKSVLSGHFAVNQLMRR 43
                     6799***********************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00022      0.26      17      38 ..     364     385 ..     357     390 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
      AAA_29  17 ieidlkgatlltGpsGsGKSTl 38 
                 ++++  +a+ ++G +GsGK+Tl
  CDO68722.1 364 LTVSAGEAVAIVGCNGSGKTTL 385
                 556645599************8 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00038      0.46       2      19 ..     372     389 ..     371     396 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
      AAA_28   2 ivitGgestGKTtlleaL 19 
                 ++i+G+ ++GKTtl++ L
  CDO68722.1 372 VAIVGCNGSGKTTLSKVL 389
                 89************9876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00052      0.62       4      41 ..     372     409 ..     370     415 .. 0.79
   2 ?   -1.1   0.0         1   1.2e+03     110     141 ..     517     548 ..     509     551 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00052
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR 41 
                 +++vG +G+GKTt    L +++     ++l+   D+ R
  CDO68722.1 372 VAIVGCNGSGKTTLSKVLLRIIDFGDGEILVNGIDIRR 409
                 789**********9888887777777777777777655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
                 HHHSSSEEEEEEETTBHTHHHHHHHHHHHHSS CS
       SRP54 110 kvvkpdevllvldattgqeavkqakaFkeavg 141
                 ++ +p+  llv d  t + ++++ k+F+++++
  CDO68722.1 517 RARRPEVQLLVFDEPTSSLDAHAQKQFHDTIE 548
                 55589999*******************99875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.3   3.6e+02      66      76 ..      19      29 ..       6      75 .. 0.78
   2 ?   -3.0   0.0       5.8   6.9e+03      79     105 ..     333     359 ..     328     363 .. 0.82
   3 ?    6.7   0.0    0.0059       7.1       3      23 ..     370     390 ..     368     428 .. 0.84
   4 ?   -2.0   0.0       2.9   3.5e+03      56      86 ..     515     550 ..     507     566 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.3
      AAA_14 66 tylflDEiqev 76
                + l++DE+q++
  CDO68722.1 19 QALIIDEVQKS 29
                569******97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.8
      AAA_14  79 wekalkslvdegknldvivtGSnskll 105
                 ++ alk++  + ++l +   GSn+  l
  CDO68722.1 333 FRPALKGMAINIRDLSFTYPGSNNPSL 359
                 78899999999999999999**99877 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0059
      AAA_14   3 kilvitGaRrvGKTtllkqli 23 
                 ++++i+G+  +GKTtl k l+
  CDO68722.1 370 EAVAIVGCNGSGKTTLSKVLL 390
                 6899************88776 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.9
      AAA_14  56 ileklkeekktylflDEiqev......pewekalksl 86 
                 +++  ++ + ++l++DE   +      +++ +++ ++
  CDO68722.1 515 FMRARRP-EVQLLVFDEPTSSldahaqKQFHDTIEQI 550
                 5554333.66777888866654444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4264.11
//
Query:       CDO68723.1  [L=299]
Description: hypothetical protein BN946_scf184652.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-75  250.9   0.2    5.8e-75  250.6   0.2    1.1  1  GTP_cyclohydroI  GTP cyclohydrolase I
     0.0084   16.2   0.0      0.025   14.8   0.0    1.7  2  QueF             QueF-like protein
  ------ inclusion threshold ------
      0.078   12.9   0.1       0.16   11.9   0.1    1.5  1  HATPase_c_2      Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.6   0.2   9.7e-79   5.8e-75       3     178 ..     122     297 ..     120     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.6 bits;  conditional E-value: 9.7e-79
                      HHHHHHHHHTT--TTSTTTTTHHHHHHHHHHHHTGGGGS-G.GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-TTEEE-HH CS
  GTP_cyclohydroI   3 eavreiLealgedpereglketpkRvakayeelfkgleedpkekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiPkkkviGlS 96 
                       avr+iLe +gedp+regl +tp+R+aka+  +++g+ee  ++ + ++vfee++demvlv+di++sSlCeHHl+pf+gk+ +aYiP+k v+GlS
       CDO68723.1 122 GAVRTILECIGEDPDREGLLKTPDRYAKALLWMTRGYEERLADIINDAVFEEDHDEMVLVRDIDISSLCEHHLVPFTGKIAIAYIPNKLVLGLS 215
                      589**************************************888889*********************************************** PP

                      HHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHHH CS
  GTP_cyclohydroI  97 klaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreefleli 178
                      klaRi++v++rrlqvQErlt+q+a a++e+++p+gvavv+ea+h+Cmtmrgv+k+++ tvts++ G f++++++reefl+li
       CDO68723.1 216 KLARIAEVFSRRLQVQERLTKQVAIAVQEAIHPRGVAVVMEATHMCMTMRGVQKPGAVTVTSCMLGCFRTQQKTREEFLTLI 297
                      *******************************************************************************998 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-06     0.025       4      59 ..     199     254 ..     196     259 .. 0.94
   2 ?   -2.5   0.0         1     6e+03      26      40 ..     280     294 ..     278     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.1e-06
        QueF   4 atlvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwlevv 59 
                 +++ i Y+p+k v+ l  l +    f +r + +E  +++++  + ea++P+ + vv
  CDO68723.1 199 GKIAIAYIPNKLVLGLSKLARIAEVFSRRLQVQERLTKQVAIAVQEAIHPRGVAVV 254
                 789***********************************************999886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
        QueF  26 lisfrnrgifhEevv 40 
                 l  fr +++ +Ee  
  CDO68723.1 280 LGCFRTQQKTREEFL 294
                 6789***99999875 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.7e-05      0.16       8      40 ..     214     246 ..     206     247 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
  HATPase_c_2   8 vrtvrevaeavlrraglseelldeirlaveEac 40 
                  +++++++ae + rr +++e+l++++ +av+Ea+
   CDO68723.1 214 LSKLARIAEVFSRRLQVQERLTKQVAIAVQEAI 246
                  67899**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2071.23
//
Query:       CDO68724.1  [L=2099]
Description: hypothetical protein BN946_scf184652.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-154  513.5   0.0   1.8e-153  512.5   0.0    1.5  2  THOC2_N   THO complex subunit 2 N-terminus
    2.3e-88  296.3   0.0    3.9e-88  295.6   0.0    1.4  1  Tho2      Transcription factor/nuclear export subunit protein
    5.9e-30  103.2   0.1      2e-29  101.5   0.1    2.0  1  Thoc2     Transcription- and export-related complex subunit
  ------ inclusion threshold ------
      0.021   15.4   0.1      0.094   13.3   0.1    2.1  1  TipAS     TipAS antibiotic-recognition domain


Domain annotation for each model (and alignments):
>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.5   0.0  4.1e-157  1.8e-153       2     626 ..       7     723 ..       6     726 .. 0.89
   2 ?   -4.8   1.1       1.6     7e+03     329     367 ..     994    1027 ..     991    1035 .. 0.49

  Alignments for each domain:
  == domain 1  score: 512.5 bits;  conditional E-value: 4.1e-157
     THOC2_N   2 tdeviasWessgrqelveklk..qa..rsdededelsslfqellrsv.....lderlspedagsfvkeilkeeseeseksk....aedvaklfldvvsv 87 
                 t+e++ +Wes+g +e+ + +   ++   +++ +++l ++++ l+ s+     ++++ls++d+ +fv+++l++ +++s++s+      +++++++dv+++
  CDO68724.1   7 TQECLLNWESGGDAECRKLVAgpHSnpHDADANATLITVYHALFSSTflswpVKKQLSMDDVVAFVQSVLDHLPSSSAPSEkspnVIAFGEVLVDVIWS 105
                 89******99999988888777522334444456677777777766622223578999****************999999889988899********** PP

     THOC2_N  88 ldeeed.......................................lakllrkllaatiiseslmreeldskllqelglvrdt.vferklirkstnllYr 146
                 +d+e +                                       l++++r lla  ++++ + re+ld  l++++glv d+ +ferk ir +t+l+Y+
  CDO68724.1 106 IDSELEeiigdaktaasaaeqgsmspttvdqvvkakanaesdkatLESIVRRLLAIGVLDPDICRERLDLALVASVGLVADKvAFERKEIRTRTSLFYK 204
                 *999999******************************************************************************************** PP

     THOC2_N 147 qkkyNLLrEeseGYSkLitelft.........tsdseep...seekaeetlervkaliGkFdLDpgRvLDviLdvfaavvvkqyrffvklLrasswwPr 233
                 q+k+NLLrEeseGYSkL+tel++         t + +ep    e +a+ t+er+ +liG+FdLDp+RvLD+iLdvf+ ++ ++++ff++lL  s+w  r
  CDO68724.1 205 QNKFNLLREESEGYSKLTTELTSnlglphnpsTGYPTEPireIEARARPTWERILGLIGYFDLDPNRVLDIILDVFSVHLATHHSFFIALLSFSPWGSR 303
                 ***********************9999887663333444555899999*************************************************99 PP

     THOC2_N 234 .............................deesewieetktlppggnrvaAqlLgfklrfysse.addelpenllylaAlLIkiGfislsdlYphLspd 302
                                               +e ++ + ++ +  +  rv+Aq+Lgfk+r+y+s+   +++p++l+ ++AlLI++Gf++l+dlYph+ p+
  CDO68724.1 304 aqsdvkqegmavepdparyrgktlmevlrIAEADSAARLDDVDTSNARVLAQVLGFKFRYYQSPeVMESTPRHLYLMTALLIREGFLRLEDLYPHVGPS 402
                 99**************************9667888999**************************9999******************************* PP

     THOC2_N 303 deemealkekyekeleekssekgsanaLamagaLsdddDtepkkekeakkkekakkkeeeekeeepepeklkdqkiqLlkaLLaiGalpeslfiLgryP 401
                 deem +l + y +++e+++   ++ + Lama++L+           ++++k+ka+ + e+++e+++   ++++qk+ Ll+ LL++Gal++++ +L+++P
  CDO68724.1 403 DEEMPDLHKAYLDNVEARIAG-AKVSQLAMAAPLESGG--------ASTTKPKATPAPEAKTEAKK---EVPNQKLGLLNGLLSVGALRPAIAVLSKFP 489
                 ******************988.*************444........22233333333333333333...3447************************** PP

     THOC2_N 402 wlaevdpeipelihRilehsleplyesvravplsseekvae.dqsglpkgskvkltespkkrllrwpktdkpleldlnkkyrFyydeWkdnlpvcqtvd 499
                 w+++++pei++li+R+l+hs++plye++   p++++  +a+  +  ++ g+   + ++p +r++ +  +++p + +++ ++ F++++W +++p c+++d
  CDO68724.1 490 WMVDAYPEIADLIIRVLKHSISPLYETTV--PSKDK--MASfTKPRARYGA-TGVIPAPERRPYLTLWAPTPPC-TSTVDFVFFFPDWVQRVPLCTSYD 582
                 ***************************99..64454..4777778888888.7777778777777777666554.569********************* PP

     THOC2_N 500 dvfklckellkllGvklgkdpeLlsklcrIgkksleeedes...............eenrerWldllrrlllPalsllkenpgvvdevyeLlklfplek 583
                 d++++ ++l++++G ++++d+++l+k  r+g+ ++ +   +               +  r  W++++r +llPal+l+  n +++ ev++++++f+++ 
  CDO68724.1 583 DLIDVLEPLMRFIGLHVCRDTAFLTKFLRLGRLHMFT-TVTidpetkkpvgtpdpeNPVRRFWFKVIRVYLLPALPLIRGNAVCTVEVWNIVRQFETTL 680
                 ********************************99944.4445788999999998765599*************************************** PP

     THOC2_N 584 RYslYgewfegltsrlpeikaafakaeketkdiLkrlSkenik 626
                 R++lYgew+ +++++ pe+k+ + ++ +e k+i++rlS+++i+
  CDO68724.1 681 RWQLYGEWKANTYKSHPELKVRQVQTDRESKGIMRRLSHNTID 723
                 ****************************************997 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 1.6
     THOC2_N  329 aLamagaLsdddDtepkkekeakkkekakkkeeeekeee 367 
                    ++a+aL++++ ++      a+++ +++ k++ ++++e
  CDO68724.1  994 KALLAAALAQQEKERI-----ANEEAEKRLKAALTAKRE 1027
                  5568999997773333.....222333333333333333 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.6   0.0   8.6e-92   3.9e-88       3     301 .]    1105    1424 ..    1103    1424 .. 0.94

  Alignments for each domain:
  == domain 1  score: 295.6 bits;  conditional E-value: 8.6e-92
        Tho2    3 ilspefyvtFWslslyDiyvpkeqYekeieklkseieel........akdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkee 90  
                   + p fy+tFW+ls+yD++ p ++Y++e++ l++ +++         + +++++ r++a++++++++r+++++++L++E+keq+++++ + krL++e
  CDO68724.1 1105 VIGPAFYLTFWQLSTYDLSPPAAKYDEECATLRTLSRQEdslyiaadR-SSDRTkRMTATSHRDKRNRINAIVNALSQELKEQTAARAFTIKRLARE 1200
                  689*******************************9999999***9853.4444449999************************************** PP

        Tho2   91 kkswfkndekkkkeitdallqrcilPRlllsplDAlycakfvkllhelktpnFstldlldrlfkanliplifscTerEaenlgrFlneilkdlkrWh 187 
                  k++wf+ +  k+  +++ ++++c+ PR+l+sp+DA +ca+f+k++h  +tp+F+tl ++d+l+ +++ +++fsc+e+Ea+n+grFl  il+dl +W 
  CDO68724.1 1201 KQHWFA-HGPKAGILASCIIEYCLQPRCLISPMDADFCAQFIKVMHLQGTPGFHTLMCYDKLLGDHVKAVVFSCSEYEARNYGRFLLGILTDLWKWF 1296
                  ******.7899999*********************************************************************************** PP

        Tho2  188 kdeeayekeal......kkdlpgfqkkl.keegk....ekelkyeqfrkvlkkwhkkilkalkscleskeymeirNaiivLkkvlevFPa...vkns 270 
                  +de+++ +e        +  lpg+q+++  + ++    e+ +k+e+f++v++kwh+k++k+l++c+e++e+m+i+Nai+vLk++l+vFP+   ++++
  CDO68724.1 1297 QDEQLFLHENRtksggnTVFLPGLQQRWpLRPKAvvaqEELIKWEDFKQVVRKWHRKLNKSLMECIETREFMHIYNAIVVLKEILPVFPVaavTEFT 1393
                  ********8877766555556699999965555589999**************************************************988899** PP

        Tho2  271 gekvlnaveklakqekreDlkvlansllkll 301 
                  g  + + +ek+ ++e+r Dlk+l ++++++l
  CDO68724.1 1394 GVGLARSIEKFLEKEERGDLKILGRAYYASL 1424
                  ***************************9875 PP

>> Thoc2  Transcription- and export-related complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.1   4.5e-33     2e-29       1      76 []     729     804 ..     729     804 .. 0.99

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 4.5e-33
       Thoc2   1 laklshsnPlivfevvlsqiesYdnlievvvdalkyltslsyDvLtyclleaLanserervkedglnlskWlqsLa 76 
                 +akl+hsnP+i+f+++++qi++Ydnl++vv++al y+t +++DvL+y++l+aLan++++rvk+dg+n+s+WlqsLa
  CDO68724.1 729 VAKLAHSNPCIFFTNAVNQIMAYDNLAGVVIQALNYVTIMGFDVLVYIILDALANPHKDRVKDDGVNTSDWLQSLA 804
                 69*************************************************************************8 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.1e-05     0.094      14      93 ..    1149    1225 ..    1129    1248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
                  .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS   14 ayqeseekiaklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwgecskeilaglgqmYvadp 93  
                  a ++s+ +++++++   +++ ++ +++ ++l + l++++++    +++la+e + +    +g +++ ila+    Y  +p
  CDO68724.1 1149 AADRSSDRTKRMTATSHRDKRNRINAIVNALSQELKEQTAARAFTIKRLAREKQHWFA--HG-PKAGILASCIIEYCLQP 1225
                  568999**************************************************99..45.77777766655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2099 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1114  (0.062134); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.51u 0.37s 00:00:01.88 Elapsed: 00:00:00.57
# Mc/sec: 11146.08
//
Query:       CDO68725.1  [L=380]
Description: hypothetical protein BN946_scf184652.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-18   66.3   0.2    3.4e-18   65.8   0.2    1.2  1  Glyco_hydro_88  Glycosyl Hydrolase Family 88
     0.0019   17.8   2.0      0.002   17.7   0.9    1.5  1  Glyco_hydro_76  Glycosyl hydrolase family 76
  ------ inclusion threshold ------
       0.07   13.6   0.1       0.16   12.5   0.1    1.6  1  DUF3417         Protein of unknown function (DUF3417)


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.2   5.7e-22   3.4e-18      79     299 ..     119     340 ..      85     369 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 5.7e-22
                     HHHHHHHHHH-..THHHHHHHHHHHHHHHHCS-B.TTS.B.SBTTSTTEEETHHHHHHHHHHHHHHHHHCGT...HHHHHHHHHHHHHHHHHBET CS
  Glyco_hydro_88  79 llllllyeltk..derykeaaeeladyvlakpprtseGgfwhkkkepeqlWlDgLfMaipllaklskvtgep...kyldeaikqflltarhlfdp 168
                      +ll+ +  t+  d ++  aa     y+l+k+prts+G   h   e+ qlW+D  +Ma+p++a ++ + g      +l  a kq +l +++l   
      CDO68725.1 119 AVLLTNWTRTNrgDHEFSTAAGHQLTYLLDKAPRTSDGAISHR-SEQVQLWADFVYMAPPFIAYYGALKGGSgglSLLKIAYKQCKLYRQYL-RS 211
                     466778877766799999********************99986.5678**********************9988677777777777766665.57 PP

                     TTSEB-SEEETTTTSTTS.--BHHHHHHHHHHHHHHHHH.....S-T.T-TTHHHHHHHHHHHHHHHHCTS-TTSSEBSBTT-TTTTSSBEHHHH CS
  Glyco_hydro_88 169 etGlyyhgwdesgtedwakefWaRgngWalaglaevlel.....Lpe.kekarqelinllrdlvkalaklqdeeglWhqilddgskesylEtSat 257
                       Gl+ h +  s +++   + W+ gn+Wa+ag+ +vle+     L    ++++ +l+  ++++v+a  k q ++g+    +d+++  s +++S t
      CDO68725.1 212 SSGLWKHIVLGSWQDN---HHWGTGNAWAAAGMLRVLETihhskLASkMQSEQSDLKSWINEIVSASWKHQHTNGTLFNYIDESD--SFADSSST 301
                     89******99999985...89******************6666644425667778889999999999999**9999999999999..******** PP

                     HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCEE-TTS- CS
  Glyco_hydro_88 258 alfvygLakgvnkglldkkkykkvaqkawkallkkaveedGq 299
                     al +    +     l  +++   +a ka+  + +  v+++G 
      CDO68725.1 302 ALLAAVTYR--LASLTGDNSHISAANKAYSLIKSS-VDSNGW 340
                     *98766644..344555778888999999777776.888886 PP

>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.9   3.3e-07     0.002     120     188 ..     267     333 ..     234     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.3e-07
                     HHHHHHHC.B-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH CS
  Glyco_hydro_76 120 vfntqasr.wdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWved 188
                      +n+++s  w++++ +G l   i   ++ +++ +s s++ l+ +  rLa  tg+++ +  A+k +  +++
      CDO68725.1 267 WINEIVSAsWKHQHTNGTLFNYI---DESDSFADSSSTALLAAVTYRLASLTGDNSHISAANKAYSLIKS 333
                     567788877**********9988...88999*********************************998877 PP

>> DUF3417  Protein of unknown function (DUF3417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.6e-05      0.16      16      88 ..     275     345 ..     242     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
     DUF3417  16 wwswneeareLFksldpelweevghnPvklLeevsqerleelaedeeflarleavveefeeyleektwfqkka 88 
                  w+ +++  +LF+ +d++   + ++  ++lL +v+  rl++l+ d++ ++  +++++ +++ ++++ w++++ 
  CDO68725.1 275 SWKHQHTNGTLFNYIDESDSFA-DSSSTALLAAVT-YRLASLTGDNSHISAANKAYSLIKSSVDSNGWLRNTV 345
                 6888999999******976544.577788888876.59******************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2741.36
//
Query:       CDO68726.1  [L=1349]
Description: hypothetical protein BN946_scf184652.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-28  100.5  28.2    1.1e-28  100.5  28.2    5.2  5  MRC1      MRC1-like domain
  ------ inclusion threshold ------
       0.81   10.2   6.0       0.52   10.9   2.5    2.4  2  AAA_18    AAA domain


Domain annotation for each model (and alignments):
>> MRC1  MRC1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       1.1   9.9e+03      97     123 ..      68      95 ..      64     113 .. 0.46
   2 ?   -0.7   4.2      0.21   1.9e+03      99     137 ..     357     400 ..     349     407 .. 0.53
   3 ?   -1.3   2.7      0.31   2.7e+03      94     107 ..     558     574 ..     505     599 .. 0.62
   4 ?   -2.8   0.1      0.92   8.3e+03     101     109 ..     644     652 ..     633     663 .. 0.47
   5 !  100.5  28.2   1.3e-32   1.1e-28       2     145 ..    1026    1169 ..    1025    1170 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.1
        MRC1  97 dldls..DsDdeeaelrrrkrrrrekkrk 123
                 d+d s  +sD+ee    ++ r ++  k k
  CDO68726.1  68 DVDASdaSSDEEE-VAGNHGRFEFSWKAK 95 
                 5555633345555.333333333333333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
        MRC1  99 dls.DsDdee....aelrrrkrrrrekkrkalledekleklakn 137
                 +ls DsDd      + +++ +++r+e+ r + l++ kl+ l+++
  CDO68726.1 357 QLSdDSDDAFpdvsEFDQQLRKKREEEERLRQLQQTKLQLLEQQ 400
                 67745555447776333333333334444434555577555554 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.31
        MRC1  94 ggndldls...DsDdee 107
                 g++ +d +   Ds+de+
  CDO68726.1 558 GDQPIDAEmvdDSEDED 574
                 23333333334555555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.92
        MRC1 101 sDsDdeeae 109
                 sD+D++ ++
  CDO68726.1 644 SDDDEDTEN 652
                 333333322 PP

  == domain 5  score: 100.5 bits;  conditional E-value: 1.3e-32
        MRC1    2 kkkasefveeeAeeSeD.eyaGlggv.....sdeeeedeeddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrr 92  
                  k k s+f+e+eAeeS+D  ++G+g       +deee++e++d++l+el+Dd+++d+++ ++e + ek++e++e+Ddk++ek++  +++G+lR rrr 
  CDO68726.1 1026 KPKHSAFIEGEAEESDDdAAFGFGVKpkgddDDEEEDGEDQDRHLDELVDDKEMDDKTLAEEKVLEKVREHQEQDDKALEKVHLAAVQGELRARRR- 1121
                  6789*************5566888779999777777777799**************************************************9998. PP

        MRC1   93 aggndldlsDsDdeeaelrrrkrrrrekkrkalledekleklaknpkakAFvk 145 
                    ++++dl DsD e  ++++r+ r r+kkr+  l+++++++lak+++++AF+k
  CDO68726.1 1122 --ARGFDLADSDSES-DEEARAVRARAKKRR--LKNDSIDALAKHEETRAFAK 1169
                  ..6789999999999.677777788888888..9999**************97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.38   3.4e+03      48      94 ..     381     433 ..     356     470 .. 0.50
   2 ?   10.9   2.5   5.8e-05      0.52      47     121 ..    1056    1131 ..    1040    1142 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.38
      AAA_18  48 eskrldedkldklldaleenss.......aleegknlvidghlaeleseaakdi 94 
                 e+++  ++ ++  l++le++ +       +  + + +++d+  +   +ea+k++
  CDO68726.1 381 EEEERLRQLQQTKLQLLEQQ-KvapahpvDDSDDDLVIVDDPKSVAKEEAQKRR 433
                 22222222222233333332.246777774444444455554444444444443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.8e-05
      AAA_18   47 deskrldedkldklldaleenss...aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeeakik 121 
                  d+ +++d + +d++ld+l    +   + + ++  v++ ++++ e+++    k v+L a   el+ R ++Rg   a+  
  CDO68726.1 1056 DDDEEEDGEDQDRHLDELVDDKEmddK-TLAEEKVLEKVREHQEQDDKALEK-VHLAAVQGELRARRRARGFDLADSD 1131
                  556788888889999999998776642.3333338***********999999.*****************96665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1281  (0.0714485); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 8306.79
//
Query:       CDO68727.1  [L=388]
Description: hypothetical protein BN946_scf184652.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     2e-188  625.9   9.9   2.3e-188  625.8   9.9    1.0  1  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  625.8   9.9  1.3e-192  2.3e-188       1     369 []       1     367 [.       1     367 [. 1.00

  Alignments for each domain:
  == domain 1  score: 625.8 bits;  conditional E-value: 1.3e-192
                   XX.S.SXXXXSSXCCCTTXSBXSXSSXXXSX.XXSBTTTTTXBSEEEEEEEEEEEEEEECHHTTSCCCCCEEEEEEEEEEC--EEEEEEEEEEEETT CS
  Ribosomal_L3   1 mshrkfeaprhgslGflprkRaerergkvksfPkddtskpvkltaflGyKaGmthiVrevdkpgskldkkevveavtvvetppmvivgvvgyvetpr 97 
                   mshrk+eaprhgslGflprkRa+r+rgkvk+fPkdd +kpv+lta++GyKaGmth+Vr++d+pgsk++++evveavt+vetppmv+vgvvgyvetpr
    CDO68727.1   1 MSHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAIMGYKAGMTHVVRDLDRPGSKMHRREVVEAVTIVETPPMVVVGVVGYVETPR 97 
                   9************************************************************************************************ PP

                   EEEEEEEEESSS.SHHHHCCCSTSTTTSSSSSSHCCCCHCSSCCCCCCHHHHHHHHHHSCSCEEEEEEEECCCSS-SCCSSHHEEEEECHCSCHHHH CS
  Ribosomal_L3  98 GlrslktvwaehlseevkrrlyknwykskkkaftkyskkyeskdvkklieadleeikkeasvvrviahtvirktkslaqKkahllEiqvngGtiaek 194
                   Glr+l+tvwa hls+e+krr+yknwy+skkkaft+y+kk+ ++d+ k ie++le+i+k+++vvrv+aht+irkt  l qKkahl+EiqvngG+ia+k
    CDO68727.1  98 GLRTLTTVWATHLSDELKRRFYKNWYRSKKKAFTRYAKKH-AEDGGKCIERELERIRKYCTVVRVLAHTQIRKTG-LSQKKAHLMEIQVNGGSIADK 192
                   ***************************************9.99*******************************8.********************* PP

                   HHHHHHCCTCEEECCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSSSSS-S-SS-SSSSS--TTS--SEEESCCEEEEEEEEEEEEETT CS
  Ribosomal_L3 195 ldfarealektvavaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrglRkvaaigawdparVsstvaraGqkGyhhRtelnkkiyrigkg 291
                   + fa+  +ek v+v +vF+q+e++Dvi+vtkG+GfeGv++RWg+kklprkth+glRkva+igaw+p++V+++varaGq+GyhhRtelnkkiyrig+g
    CDO68727.1 193 VAFAHGLFEKPVEVGSVFEQDEVVDVIAVTKGHGFEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGRG 289
                   ************************************************************************************************* PP

                   TSSTTTSSTTT.SS..SS.TTTCTTCB..TSCEEEEES--SSSTTEEEEEEE-SSGGGSCCCSS-EEEEEE-TTCTSS CS
  Ribosomal_L3 292 edaknastefdltekeitPmGGfvhyGevkndfilvkGsvpGpkkrlvklrkslltqtsrkaeeevslkfidtaskfg 369
                   +d++naste+d t+k itPmGGf+hyG+vkndf+++kGs+pG+kkr++++rksl+++tsr+++e+v+lkfidt+skfg
    CDO68727.1 290 DDSANASTEHDITKKAITPMGGFPHYGIVKNDFLMLKGSIPGTKKRVITIRKSLMVHTSRRDLEKVQLKFIDTSSKFG 367
                   ****************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2953.62
//
Query:       CDO68728.1  [L=574]
Description: hypothetical protein BN946_scf184652.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-09   35.3   4.2        2.1    8.6   0.0    6.6  7  PPR_2     PPR repeat family
    2.9e-08   33.6   0.0      0.015   15.3   0.0    3.5  3  PPR_3     Pentatricopeptide repeat domain
    1.3e-05   25.1   6.7        4.3    7.8   0.0    6.8  7  PPR       PPR repeat
    0.00011   21.8   5.5       0.16   11.7   1.9    4.2  5  PPR_1     PPR repeat
  ------ inclusion threshold ------
       0.04   14.5   0.3        0.1   13.2   0.3    1.6  1  TPPII_N   Tripeptidyl peptidase II N terminal


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.1   3.6e+02      14      31 ..     112     129 ..     109     132 .. 0.83
   2 !    6.1   0.0    0.0036        13       6      35 ..     191     226 ..     190     236 .. 0.80
   3 !    8.6   0.0    0.0006       2.1      34      45 ..     249     260 ..     244     269 .. 0.74
   4 ?   -1.1   0.0      0.65   2.3e+03      28      40 ..     277     290 ..     272     296 .. 0.78
   5 ?    2.5   0.0     0.049   1.7e+02       8      35 ..     293     320 ..     286     324 .. 0.86
   6 ?    4.1   0.0     0.015        54       5      23 ..     325     343 ..     321     356 .. 0.86
   7 !    6.7   0.0    0.0023       8.3       1      29 [.     384     411 ..     383     414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
       PPR_2  14 ckkgkveeAfklfneMkk 31 
                 +k  +++eA++ ++e  k
  CDO68728.1 112 AKCTNLDEAWQTYQELLK 129
                 677899*******99876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0036
       PPR_2   6 yNtlIsglc......kkgkveeAfklfneMkkrgle 35 
                 +N+lI +        +  +++ A+ ++++M+ +  +
  CDO68728.1 191 WNALIECAGrgwrktRMDDFQAALNVYHDMVTNRAP 226
                 7888877778888778899***********998765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0006
       PPR_2  34 lePnsyTysili 45 
                 ++P+++Ty++li
  CDO68728.1 249 VTPDVVTYTTLI 260
                 567777777766 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.65
       PPR_2  28 eMkk.rglePnsyT 40 
                 eM    gl+Pn +T
  CDO68728.1 277 EMLVsSGLQPNRIT 290
                 555437*****999 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.049
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrgle 35 
                 +++ ++  kg++    ++++ M+++g e
  CDO68728.1 293 VYLRYYGWKGRLGAVRSVLQRMEENGWE 320
                 67999********************975 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.015
       PPR_2   5 tyNtlIsglckkgkveeAf 23 
                  +N+lI ++  +g++e A 
  CDO68728.1 325 GFNALIWAYGANGELEIAA 343
                 59*************9985 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0023
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneM 29 
                 pd +ty +lI+ ++ +g++ e++++f +M
  CDO68728.1 384 PDAITYYSLIQIYAYHGHI-ECLRVFADM 411
                 899***************7.589999999 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00042       1.5      11      52 ..     249     290 ..     242     299 .. 0.75
   2 !   15.3   0.0   4.3e-06     0.015       7      63 .]     280     336 ..     274     336 .. 0.93
   3 !    6.4   0.0    0.0026       9.3      11      40 ..     382     410 ..     379     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00042
       PPR_3  11 ikldvvtYthLLtayanagnkklalevlermkkkgikPtvvt 52 
                 + +dvvtYt+L+t + ++     + +  e +   g++P+++t
  CDO68728.1 249 VTPDVVTYTTLITIAGRTLHPVVLHRAEEMLVSSGLQPNRIT 290
                 679*********998777666666666666666777777766 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.3e-06
       PPR_3   7 erkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgviggr 63 
                 +  g++++ +t    L+ y   g + ++  vl+rm+++g +  ++ +Na++ ++g +
  CDO68728.1 280 VSSGLQPNRITNLVYLRYYGWKGRLGAVRSVLQRMEENGWELGIDGFNALIWAYGAN 336
                 678999999999999***************************************965 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0026
       PPR_3  11 ikldvvtYthLLtayanagnkklalevler 40 
                 +k+d +tY +L++ ya+ g  +  l+v++ 
  CDO68728.1 382 LKPDAITYYSLIQIYAYHGHIEC-LRVFAD 410
                 799**************997664.455555 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.22   7.7e+02      10      28 ..     111     129 ..     109     131 .. 0.86
   2 ?   -1.6   0.0       1.2   4.4e+03       3      12 ..     191     200 ..     191     202 .. 0.84
   3 ?    1.1   0.0      0.17     6e+02      12      28 ..     206     222 ..     205     224 .. 0.85
   4 ?    1.4   0.1      0.13   4.6e+02       1       9 [.     254     262 ..     254     268 .. 0.83
   5 !    5.7   0.0    0.0056        20      10      30 ..     298     318 ..     294     319 .. 0.92
   6 !    7.8   0.0    0.0012       4.3       3      23 ..     326     346 ..     325     351 .. 0.87
   7 ?    3.9   0.1     0.021        75       1      17 [.     387     403 ..     387     414 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.22
         PPR  10 ycknGkleeAlelfkeMke 28 
                 ++k+ +l+eA + ++e+++
  CDO68728.1 111 LAKCTNLDEAWQTYQELLK 129
                 678889*********9986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
         PPR   3 ynslIsgyck 12 
                 +n+lI + ++
  CDO68728.1 191 WNALIECAGR 200
                 9****98665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
         PPR  12 knGkleeAlelfkeMke 28 
                 +  +++ Al ++++M+ 
  CDO68728.1 206 RMDDFQAALNVYHDMVT 222
                 6678999********86 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.13
         PPR   1 vtynslIsg 9  
                 vty++lI  
  CDO68728.1 254 VTYTTLITI 262
                 8******86 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0056
         PPR  10 ycknGkleeAlelfkeMkekG 30 
                 y+ +G+l  + +++++M+e+G
  CDO68728.1 298 YGWKGRLGAVRSVLQRMEENG 318
                 999****************99 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0012
         PPR   3 ynslIsgycknGkleeAlelf 23 
                 +n+lI +y+ nG+le A  ++
  CDO68728.1 326 FNALIWAYGANGELEIAAFIY 346
                 8*************9886665 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.021
         PPR   1 vtynslIsgycknGkle 17 
                 +ty slI+ y+ +G +e
  CDO68728.1 387 ITYYSLIQIYAYHGHIE 403
                 699*********99875 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.1   7.6e+03      19      28 ..     113     122 ..     111     125 .. 0.79
   2 !   11.7   1.9   4.3e-05      0.16       3      14 ..     249     260 ..     248     261 .. 0.91
   3 ?   -2.1   0.0      0.91   3.3e+03       2       9 ..     283     290 ..     282     290 .. 0.90
   4 ?   -0.0   0.0      0.21   7.4e+02      10      26 ..     326     342 ..     325     343 .. 0.91
   5 !    7.0   0.0    0.0013       4.6       3      17 ..     382     396 ..     381     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.1
                 HTS-HHHHHH CS
       PPR_1  19 kaGrvdeAfe 28 
                 k+ ++deA +
  CDO68728.1 113 KCTNLDEAWQ 122
                 66799***76 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.3e-05
                 ----HHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLI 14 
                 + PdvvTY+tLI
  CDO68728.1 249 VTPDVVTYTTLI 260
                 57*********9 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.91
                 S----HHH CS
       PPR_1   2 GlkPdvvT 9  
                 Gl+P+ +T
  CDO68728.1 283 GLQPNRIT 290
                 9****998 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.21
                 HHHHHHHHHHTS-HHHH CS
       PPR_1  10 YNtLIdGlCkaGrvdeA 26 
                 +N LI ++  +G+++ A
  CDO68728.1 326 FNALIWAYGANGELEIA 342
                 9***********99866 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0013
                 ----HHHHHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLIdGl 17 
                 lkPd++TY +LI  +
  CDO68728.1 382 LKPDAITYYSLIQIY 396
                 89**********876 PP

>> TPPII_N  Tripeptidyl peptidase II N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   2.9e-05       0.1      20     111 ..      47     136 ..      27     143 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----HHHHHH.HHHHHHHHHHTTS.-HHHHHHHHHHHHHH-TT-TH CS
     TPPII_N  20 vtanaakpkaaataqaatsvgspaagdgvatqtdgpaegsgspaspkkgkakaDeYaE.slRDfqcsqiakl.dlenAekiYnevvaahPkHLa 111
                 ++a +a++ a + a++    g +aa+++   +     e++ ++++ k  +++   Y +  lR     ++ak+ +l++A + Y+e+++  P HL 
  CDO68728.1  47 SSAMSADSLAGTIAPQ----GASAASSSHYGSPSHLSEAAKGSGTSKPRRSSQYAYRDhRLRQPLYQKLAKCtNLDEAWQTYQELLKYRPAHLD 136
                 2222222222222233....34444444443333334443333445666777777765279*99999****9669*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3680.14
//
Query:       CDO68729.1  [L=245]
Description: hypothetical protein BN946_scf184652.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-45  155.1   0.0    1.7e-45  154.7   0.0    1.2  1  AMMECR1   AMMECR1


Domain annotation for each model (and alignments):
>> AMMECR1  AMMECR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   9.2e-50   1.7e-45      11     165 ..      35     226 ..      14     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 9.2e-50
                 HTTSS-S-HH---HHHHSEEEEEEEEE.EE........CCECCCECEEEEEEHHHHHHHHHHHHHHT-TTS----HHHHTTEEEEEEEE---EE--.GG CS
     AMMECR1  11 alkeekkleeeakeelkekaglFVtlk.ekkg......eLRGCiGtleperpLaeevaenAlaaAfeDpRFspvtaeElpeleveVsvLtepepiv.le 101
                 al+++k++    ++  + k++lFVt++ ++ +      +LRGCiGt+e ++pL++++ae+Al +Af+D+RF+++++ El++le++Vs+Lt++e++    
  CDO68729.1  35 ALTSKKPIP---PKFPDGKYPLFVTWNtRS-SrpgrphKLRGCIGTFE-SQPLKDGLAEYALISAFRDHRFRRIEEWELENLECSVSLLTDFEDVGsYL 128
                 444444432...3344569********544.4599999**********.9*********************************************4367 PP

                 G--TTT-EEEEE.ET...............................TEEEEE-THHHHHTT--HHHHHHHHHHHHTS-T..TC.CCSTTSEEEEE-EEE CS
     AMMECR1 102 dlevgkhGliie.kg...............................srsatlLPqvaveqgwdkeeflasllrKaglrp..de.wkdseikltryevek 165
                 d+evg+hG++i+  +                               ++sat+LP+va+eqgwdk e+++s++rKag+++  +e + ++ +k++ry+++ 
  CDO68729.1 129 DWEVGVHGIYITfPHpslipvapspssapsplssssstptrgvlkhTFSATFLPHVAEEQGWDKIETIDSAIRKAGWSGriSEdL-RRALKVRRYQSRS 226
                 7***********87689**************************************************************986657.77********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1723.29
//
Query:       CDO68730.1  [L=317]
Description: hypothetical protein BN946_scf184652.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-44  149.8   0.0    1.4e-43  148.3   0.0    1.6  2  Ras          Ras family
    6.9e-33  113.4   0.0    9.5e-33  113.0   0.0    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.4e-12   47.4   0.0      2e-12   46.9   0.0    1.1  1  Arf          ADP-ribosylation factor family
    1.9e-07   31.1   0.0    3.1e-07   30.5   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00029   20.3   0.1    0.00045   19.7   0.1    1.4  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0008   18.8   0.0     0.0011   18.4   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0055   17.0   0.2      0.015   15.6   0.2    1.8  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.052   13.5   0.0    1.9  2  RsgA_GTPase  RsgA GTPase
       0.05   14.0   0.0      0.072   13.5   0.0    1.3  1  AAA_16       AAA ATPase domain
      0.084   13.1   0.0       0.24   11.6   0.0    1.7  1  Flg_new      Listeria-Bacteroides repeat domain (List_Bact_rp
      0.087   12.7   0.1       0.13   12.2   0.1    1.3  1  NTPase_1     NTPase
        0.1   12.3   0.1       0.17   11.6   0.1    1.3  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.12   12.1   0.1        0.2   11.4   0.1    1.3  1  AAA_24       AAA domain
       0.18   11.3   0.4       0.29   10.6   0.4    1.2  1  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   1.1e-46   1.4e-43       1     127 [.      23     150 ..      23     156 .. 0.96
   2 ?   -1.9   0.0       1.7   2.2e+03     130     147 ..     288     305 ..     279     308 .. 0.79

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 1.1e-46
                 EEEEEESTTSSHHHHHHHHHHSSCS.SSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFk.eeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeik 98 
                 K+v++G+++vGKtsll+r++++kF+ ++ +sT g+ f tk+++v g++v+l++wDTAGqe+f+s++++yyr+a+++ll+ydit+++sfe+v+ w+ee+k
  CDO68730.1  23 KIVIMGNTGVGKTSLLHRYTQGKFDpKNTTSTTGAFFVTKKVTVGGTKVRLQLWDTAGQERFRSMAPMYYRGANAALLLYDITNASSFEDVRGWLEELK 121
                 9***********************7356789******************************************************************** PP

                 HHSTTTSEEEEEEETTTGGGG-SS-HHHH CS
         Ras  99 rvaeenvpivLvGnKvDleekravsteeg 127
                 + ++ ++ i++vG K+Dl++ r+v+ + +
  CDO68730.1 122 KNCSPDLIIYIVGAKADLQHARQVTSDLA 150
                 ****99******************98765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                 HHHHHTSEEEEEBTTTTC CS
         Ras 130 lakelglkfletSAktne 147
                 +  ++g++ +e+SAk++ 
  CDO68730.1 288 WGLRKGMELFEVSAKDDI 305
                 556788999*****9875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   7.5e-36   9.5e-33       1     119 [.      23     138 ..      23     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 7.5e-36
                 EEEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl 95 
                 K+v++G++gvGKtsll+r++++kf++k ++st+g+ f+tk+v ++ g       +kv+l++WDtaGqerfrs++p+y+r+a++a+l+yd   ++s+e++
  CDO68730.1  23 KIVIMGNTGVGKTSLLHRYTQGKFDPKnTTSTTGAFFVTKKV-TVGG-------TKVRLQLWDTAGQERFRSMAPMYYRGANAALLLYDitnASSFEDV 113
                 9***********************9772579*********98.4555.......4699*******************************6544467899 PP

                 HHHHHHHHHHCSSS-EE.EEEE-TT CS
         Roc  96 keWlkelkkvagkspvi.lvgnkiD 119
                 + Wl+elkk+++ + +i +vg k+D
  CDO68730.1 114 RGWLEELKKNCSPDLIIyIVGAKAD 138
                 9*********998866659****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.6e-15     2e-12      14     142 ..      21     154 ..      12     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.6e-15
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE..CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt..tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLka 106
                 +++i+++G  + GKt +l+++++++++   t+ T+g  f ++++++   ++++++wD  Gqe+ R++   Y++  +a + + D ++ + +e+ +  L++
  CDO68730.1  21 DAKIVIMGNTGVGKTSLLHRYTQGKFDPknTTSTTGafFVTKKVTVggTKVRLQLWDTAGQERFRSMAPMYYRGANAALLLYDITNASSFEDVRGWLEE 119
                 68*********************998642366676644677888885568999*********************************************9 PP

                 HCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTG CS
         Arf 107 lleeeelkevallvlaNKqDlpealseeelrellgl 142
                 l +++   + ++ +++ K Dl++a + +   + l+l
  CDO68730.1 120 L-KKNCSPDLIIYIVGAKADLQHARQVTSDLARLSL 154
                 7.556677999999********99887665555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.4e-10   3.1e-07       1      84 [.      23     134 ..      23     157 .. 0.54

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.4e-10
                 EEEEEESTTSSHHHHHHHHHTSTEEESSST......TSSSSEEEEEEEETTEEEEEEECGGC......................SSHHHHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkp......gtTrdinegrvklkgkeielvDtpGl......................iegaseekglgkafl 71 
                 +++i+G++ vGK++L+ + t+ k   +++       ++T++++ g  k    +++l+Dt+G                       i +as+ ++++  ++
  CDO68730.1  23 KIVIMGNTGVGKTSLLHRYTQGKFDPKNTTsttgafFVTKKVTVGGTK---VRLQLWDTAGQerfrsmapmyyrganaalllydITNASSFEDVRGWLE 118
                 699*****************9655444444000112566666555444...689*******33334444444444444443322222222222222222 PP

                 HHHC..T.SEEEEEEE CS
    MMR_HSR1  72 alee..a.dlillvvd 84 
                 +l++  + dli+++v 
  CDO68730.1 119 ELKKncSpDLIIYIVG 134
                 2222221355555555 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   3.5e-07   0.00045       5      64 ..      23      86 ..      20     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.5e-07
                EEEEE-STTSSHHHHHHHHHHSS---.B---S..S-EEETTG....GGTT-SEEEETT-GCCSH CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkk.tvtSq..essaalkv.ksekgskltliDfPGheklrq 64
                +++++G +  GKTsl++r t++++ +   tS   +  +++kv  +  + +l+l D  G+e++r+
  CDO68730.1 23 KIVIMGNTGVGKTSLLHRYTQGKFDPkNTTSTtgAFFVTKKVtVGGTKVRLQLWDTAGQERFRS 86
                799*******************7654133444324555666644567778899*********97 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.5e-07    0.0011       1     123 [.      23     139 ..      23     151 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.5e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsm.rsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+++mG+ g GKts+ ++    ++ +++t++ + +  v+k+      ++ l+lwD  Gqe+f   +        +r  ++ + + D++     +++e+ 
  CDO68730.1  23 KIVIMGNTGVGKTSLlHRYTQGKFDPKNTTSTTGAFFVTKKVTVGGTKVRLQLWDTAGQERFRSMA-----PMYYRGANAALLLYDIT---NASSFEDV 113
                 799***********82556677899****9999999998888878999************997764.....33333333444444666...33444444 PP

   Gtr1_RagA  99 keilealr.qyspeakvfvlihKmDl 123
                 +  le+l+ ++sp++ + +   K Dl
  CDO68730.1 114 RGWLEELKkNCSPDLIIYIVGAKADL 139
                 44554443145666666666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.2e-05     0.015       8      29 ..      24      45 ..      19     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                +v++G +G+GKT ll r+++ +
  CDO68730.1 24 IVIMGNTGVGKTSLLHRYTQGK 45
                79****************9986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.1e-05     0.052     101     122 ..      23      44 ..      17      85 .. 0.84
   2 ?   -2.0   0.0       2.3   2.9e+03     126     141 ..     295     310 ..     291     315 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                   +v++G++GvGK++L+ + ++ 
   CDO68730.1  23 KIVIMGNTGVGKTSLLHRYTQG 44 
                  579*************987764 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                  --S------------- CS
  RsgA_GTPase 126 ktgevseklgrGkhTT 141
                  +  evs+k++ Gkh  
   CDO68730.1 295 ELFEVSAKDDIGKHPC 310
                  56699********965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.6e-05     0.072      27     106 ..      24     125 ..      11     192 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-05
      AAA_16  27 vllsGesGvGKsslvrellr.alekd......ggiflrgkcdqlesa..............ipysa.laqalareellrqlldeaesaeleawreklee 103
                 +++ G+ GvGK+sl+ +  +  +  +      g++f++ k +  +++              +++++ + + + +  ll ++ ++++  +++ w e+l++
  CDO68730.1  24 IVIMGNTGVGKTSLLHRYTQgKFDPKnttsttGAFFVTKKVTVGGTKvrlqlwdtagqerfRSMAPmYYRGANAALLLYDITNASSFEDVRGWLEELKK 122
                 789************777764444446666665555555555553332333333333333333344455555555666666666666666666666666 PP

      AAA_16 104 ala 106
                 + +
  CDO68730.1 123 NCS 125
                 655 PP

>> Flg_new  Listeria-Bacteroides repeat domain (List_Bact_rpt)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.24      22      48 ..     245     272 ..     240     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
                 ----.B--EETTEEEEEEESSTTCCSB- CS
     Flg_new  22 itlp.anptkeGYtFaGWytdsdgttay 48 
                 +t++ +np++ GY  +GW+++ dg+++ 
  CDO68730.1 245 ATTSrQNPSRFGYRPVGWNESGDGSSNS 272
                 4444499****************97543 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1    0.0001      0.13       1      56 [.      23      82 ..      23     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
                EEEEE--TTSSHHHHHHHHHH.HH...G.GGEEE..EEEEEE-------EEEEEET.T-- CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvle.llkssg.vkvgG..fyteevreggrrigFkivdlasge 56
                k++i G+ GvGKt l+++ ++ + + ++  + +G  f+t++v+ gg+++  ++ d a +e
  CDO68730.1 23 KIVIMGNTGVGKTSLLHRYTQgKFDPKNtTSTTGafFVTKKVTVGGTKVRLQLWDTAGQE 82
                689***************886356655514566777899*********999999984443 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00014      0.17       2      31 ..      22      51 ..      21      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
   PduV-EutP  2 kkilliGkvgsGKttLtqalkgeelkYkkt 31
                 ki+++G++g+GKt+L ++ ++ ++  k t
  CDO68730.1 22 AKIVIMGNTGVGKTSLLHRYTQGKFDPKNT 51
                59**************99988877766666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00015       0.2       3      22 ..      22      41 ..      20      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                +ki+i+G  g+GKT+l+ ++
  CDO68730.1 22 AKIVIMGNTGVGKTSLLHRY 41
                79**************9988 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00023      0.29      35      66 ..      23      55 ..      19      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylslt 66
                +++++G+tG+GKt+++++ +  k+d+++++s+t
  CDO68730.1 23 KIVIMGNTGVGKTSLLHRyTQGKFDPKNTTSTT 55
                6899**************556677777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2263.30
//
Query:       CDO68731.1  [L=196]
Description: hypothetical protein BN946_scf184652.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-87  291.8   2.5    2.1e-87  291.6   2.5    1.0  1  Ribosomal_S7e  Ribosomal protein S7e


Domain annotation for each model (and alignments):
>> Ribosomal_S7e  Ribosomal protein S7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.6   2.5   1.2e-91   2.1e-87       4     183 ..      12     191 ..       9     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 291.6 bits;  conditional E-value: 1.2e-91
                    SSS-S---HHHHHHHHHHHHHHHHTSSCHHHHTT--ECEEEEEEETSSCEEEEEEEEHHHHHHTTTCHHHHHHHHHHHC.SSEEEEEEE-----SS CS
  Ribosomal_S7e   4 kpkgeepteleeqvaqalldleanssdlkaelrelqissakevevkkkkkaivifvpvpllkafqkiqqrlvreLeKkfsgkhvvfvaqRrilkkp 99 
                    ++ ++ p+e+e  vaqa++dle+++++lk+elr+lqis+a+ev+v+++kkaivifvpvp+lkaf+k+qqrl+reLeKkfs++hvvfvaqRr+l+kp
     CDO68731.1  12 NAPRTPPDETEIAVAQAIIDLENSAPELKSELRPLQISAAREVDVRGGKKAIVIFVPVPQLKAFHKVQQRLTRELEKKFSDRHVVFVAQRRVLPKP 107
                    667899****************************************************************************************** PP

                    CG.TTSTSS--TTSSHHHHHHHHHHHHCTTS-EEEEEEEE-SSS-EEEEEEEESCTCCCHHHHHHHHHHHHHHHHS-BEEEEEE CS
  Ribosomal_S7e 100 trrskkkqkrprsrtltaVhdaiLedlvyPseivGkrirvrldgskllkvfLdkkdqnnveekldtfsavykkLtgkdvvFefp 183
                    tr+s+ kqkrprsrtlt+Vh++iLedlv+P+eivGkr+rv +dgskllkvfLd+kd++++e+kld+fs+vy++LtgkdvvFefp
     CDO68731.1 108 TRNSRVKQKRPRSRTLTQVHEKILEDLVFPTEIVGKRTRVAVDGSKLLKVFLDSKDATSLEYKLDSFSSVYRRLTGKDVVFEFP 191
                    ***********************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1500.22
//
Query:       CDO68732.1  [L=338]
Description: hypothetical protein BN946_scf184652.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-13   48.3   5.9    5.5e-07   29.1   1.4    4.2  4  TPR_1       Tetratricopeptide repeat
    1.1e-08   34.5   8.5      3e-05   23.8   1.0    3.0  3  TPR_2       Tetratricopeptide repeat
    9.5e-07   28.6   2.4    0.00055   20.0   0.7    2.9  2  TPR_8       Tetratricopeptide repeat
    4.6e-06   27.0   1.9      0.001   19.5   0.1    3.2  3  TPR_19      Tetratricopeptide repeat
    2.4e-05   24.6   3.8      0.017   15.4   0.2    2.6  3  TPR_12      Tetratricopeptide repeat
    0.00024   21.6   0.8      0.042   14.7   0.3    2.8  2  TPR_14      Tetratricopeptide repeat
    0.00033   20.6   1.6     0.0046   17.0   0.4    2.4  2  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
     0.0017   19.0   2.3        1.1   10.0   0.0    2.8  3  TPR_16      Tetratricopeptide repeat
     0.0026   18.0   1.1      0.012   15.8   0.3    2.1  2  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
     0.0038   17.1   3.9       0.57   10.3   1.0    2.8  2  TPR_7       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.3   1.9        4.1    7.2   0.1    3.1  3  TPR_11      TPR repeat
      0.048   13.7   0.2         16    5.6   0.0    2.7  2  MIT         MIT (microtubule interacting and transport) domai
        0.1   12.6   0.1       0.38   10.7   0.0    2.0  2  RPT         A repeated domain in UCH-protein
       0.12   12.8   2.8       0.56   10.7   0.1    3.2  3  TPR_17      Tetratricopeptide repeat
       0.35   11.6   6.9        1.5    9.6   0.6    3.3  3  TPR_6       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   3.5e-05     0.042       7      33 ..      60      86 ..      55      87 .. 0.90
   2 ?    0.6   0.0      0.48   5.7e+02       3      18 ..      94     109 ..      93     114 .. 0.80
   3 ?    3.7   0.0     0.052        62      17      33 ..     127     143 ..     125     144 .. 0.82
   4 !   29.1   1.4   4.6e-10   5.5e-07       2      34 .]     146     178 ..     145     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
                HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnPn 33
                 Gn yfk ++y eA ++y + +   P+
  CDO68732.1 60 QGNDYFKGKRYREARDFYTQGIDAKPE 86
                69*******************998887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHTT-HH CS
       TPR_1   3 alynlGnayfklgkyd 18 
                  l+n++++ ++l +  
  CDO68732.1  94 LLCNRAACNLELRRSR 109
                 58******99988765 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHSTT CS
       TPR_1  17 ydeAleyyekALelnPn 33 
                 y   l +++kA+ +nP+
  CDO68732.1 127 YGSVLRDCSKAIGVNPK 143
                 556689**********7 PP

  == domain 4  score: 29.1 bits;  conditional E-value: 4.6e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ka+y+ ++a+  l++ydeAl++++++L+ + +n
  CDO68732.1 146 KAYYRSALALIALERYDEALDCCDRCLQFDKDN 178
                 8****************************9987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.9e-05     0.022       6      34 .]      59      87 ..      54      87 .. 0.90
   2 ?   -2.3   0.1       5.8   6.9e+03       3      20 ..      94     111 ..      93     113 .. 0.74
   3 !   23.8   1.0   2.6e-08     3e-05       2      34 .]     146     178 ..     145     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
       TPR_2  6 nlGlayyklgdyeeAleafekAleldPnn 34
                ++G+ y+k ++y eA++++ + +   P++
  CDO68732.1 59 EQGNDYFKGKRYREARDFYTQGIDAKPED 87
                68********************9999875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.8
       TPR_2   3 alynlGlayyklgdyeeA 20 
                 +l+n++ + ++l +  +A
  CDO68732.1  94 LLCNRAACNLELRRSRRA 111
                 578899998888876555 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 2.6e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+y+ +la+++l +y+eAl++++++l+ d +n
  CDO68732.1 146 KAYYRSALALIALERYDEALDCCDRCLQFDKDN 178
                 79**************************99987 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0052       6.2      11      34 .]      64      87 ..      61      87 .. 0.93
   2 !   20.0   0.7   4.6e-07   0.00055       2      34 .]     146     178 ..     145     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
                HHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8 11 ylklgdyeeAkeyyekaleldpdn 34
                y+k ++y eA  +y + ++++p++
  CDO68732.1 64 YFKGKRYREARDFYTQGIDAKPED 87
                88999****************985 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 4.6e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +ayy+ +++++ l++y+eA  ++ ++l+ d+dn
  CDO68732.1 146 KAYYRSALALIALERYDEALDCCDRCLQFDKDN 178
                 89***************************9986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.32   3.8e+02      48      65 ..      25      42 ..      24      45 .. 0.88
   2 ?    3.5   0.0     0.086     1e+02       5      28 ..      68      91 ..      59     112 .. 0.79
   3 !   19.5   0.1   8.7e-07     0.001      11      57 ..     131     177 ..     125     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.32
      TPR_19 48 LdalpeedpddaryasLl 65
                ++ lpee+ dda++++L+
  CDO68732.1 25 MKSLPEEATDDAAISALQ 42
                6889**********9998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.086
      TPR_19  5 gdyaeAlalleqalqedpknaear 28
                ++y eA ++++q ++++p++  ++
  CDO68732.1 68 KRYREARDFYTQGIDAKPEDKSIL 91
                589999999999999999987665 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 8.7e-07
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 l+  ++a+  +pk++ a ++ A al+al ++deA +++d+ ++ d+d
  CDO68732.1 131 LRDCSKAIGVNPKSSKAYYRSALALIALERYDEALDCCDRCLQFDKD 177
                 5567889999*****************************98888877 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00076       0.9      37      75 ..      46      84 ..      31      86 .. 0.78
   2 ?   -3.0   0.1         8   9.5e+03      47      64 ..      94     111 ..      88     113 .. 0.65
   3 !   15.4   0.2   1.4e-05     0.017       4      32 ..     146     174 ..     143     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00076
      TPR_12 37 lGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                ++++ +++a+     g  y++ +ry+eA++++++ ++++
  CDO68732.1 46 YEGTPDEVAQNFKEQGNDYFKGKRYREARDFYTQGIDAK 84
                444445789999999*******************98876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8
      TPR_12  47 tlrnLgrlyralgryeeA 64 
                  l+n + + ++l r + A
  CDO68732.1  94 LLCNRAACNLELRRSRRA 111
                 466666666666666555 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.4e-05
      TPR_12   4 talnnlaavlrrlgrydeAlellekalei 32 
                 +a+++ a++l +l+rydeAl++++++l+ 
  CDO68732.1 146 KAYYRSALALIALERYDEALDCCDRCLQF 174
                 689999********************985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.071        85      11      41 ..      64      94 ..      54      95 .. 0.84
   2 !   14.7   0.3   3.5e-05     0.042       2      34 ..     146     178 ..     145     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.071
      TPR_14 11 llalGdpdeAiallrralalaPddaeawlll 41
                ++   +++eA++ + + +++ P+d  ++ +l
  CDO68732.1 64 YFKGKRYREARDFYTQGIDAKPEDKSILEAL 94
                777889*****************98887665 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.5e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +a+++ a al al+++deA+++++r+l+ + d+
  CDO68732.1 146 KAYYRSALALIALERYDEALDCCDRCLQFDKDN 178
                 589999**********************99887 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   2.1e+02      11      35 ..      64      88 ..      64      92 .. 0.79
   2 !   17.0   0.4   3.9e-06    0.0046       5      35 ..     149     179 ..     145     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
                HHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C 11 hyklgeYseArryvdalLeiEPenr 35
                ++k ++Y+eAr +  + +   Pe +
  CDO68732.1 64 YFKGKRYREARDFYTQGIDAKPEDK 88
                67999*******9888777777765 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvdalLeiEPenr 35 
                 Y  Al+ + l +Y+eA+ ++d++L+ + +n+
  CDO68732.1 149 YRSALALIALERYDEALDCCDRCLQFDKDNK 179
                 55689**********************9996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       7.1   8.5e+03      51      66 ..      35      51 ..      34      53 .. 0.64
   2 !    8.1   0.1    0.0035       4.2       3      32 ..      60      89 ..      58     111 .. 0.82
   3 !   10.0   0.0   0.00091       1.1      24      58 ..     138     169 ..     135     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.1
      TPR_16 51 aeAa.alyraalraapd 66
                ++A+ al   a++  pd
  CDO68732.1 35 DAAIsALQSLAYEGTPD 51
                56776666666676666 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0035
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPd 32
                +++++++ ++y++A+  +++ +++ p++  
  CDO68732.1 60 QGNDYFKGKRYREARDFYTQGIDAKPEDKS 89
                89**************99999999955444 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00091
      TPR_16  24 lkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 +  +   P    A++ +++a+ ++ r++eA++ ++
  CDO68732.1 138 IGVN---PKSSKAYYRSALALIALERYDEALDCCD 169
                 5566...88889******************97555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.71   8.4e+02      33      49 ..      64      80 ..      44     112 .. 0.74
   2 !   15.8   0.3     1e-05     0.012      39      80 ..     127     169 ..     117     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.71
                HHHTT-HHHHHHHHHCT CS
      ANAPC3 33 lylngqykrAyellrka 49
                +++ ++y +A +++ + 
  CDO68732.1 64 YFKGKRYREARDFYTQG 80
                67777777776666655 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1e-05
                 HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  39 ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 y + ++ ++ka + n+ks ++ y  A +l++L++y+eA+++ +
  CDO68732.1 127 YGSVLRDCSKAiGVNPKSSKAYYRSALALIALERYDEALDCCD 169
                 66666777888899*************************9866 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0082       9.8       9      35 ..      64      88 ..      60      89 .. 0.84
   2 !   10.3   1.0   0.00047      0.57       1      31 [.     147     177 ..     147     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0082
       TPR_7  9 ysrlGdyeeAielyeqsLaltkdpeda 35
                y++  +y+eA ++y+q  +++  ped+
  CDO68732.1 64 YFKGKRYREARDFYTQ--GIDAKPEDK 88
                555669**********..***999987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00047
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 a+++ a +  +l +y+eA++++ ++L+++kd
  CDO68732.1 147 AYYRSALALIALERYDEALDCCDRCLQFDKD 177
                 57777889999****************9998 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0034       4.1       1      31 [.      61      91 ..      61      94 .. 0.90
   2 ?    1.5   0.0       0.2   2.4e+02      19      38 ..     136     155 ..     135     158 .. 0.85
   3 ?    4.3   0.1     0.026        31       3      27 ..     154     178 ..     152     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0034
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeay 31
                G+ y++  +y eA   Y + ++ +P++ +++
  CDO68732.1 61 GNDYFKGKRYREARDFYTQGIDAKPEDKSIL 91
                9**********************99987766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
      TPR_11  19 kAlkldPdnaeayynLGlay 38 
                 kA+  +P++  ayy  +la+
  CDO68732.1 136 KAIGVNPKSSKAYYRSALAL 155
                 89999*********877775 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.026
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdn 27 
                 a+ ++ +y+eA+ +  + l++d dn
  CDO68732.1 154 ALIALERYDEALDCCDRCLQFDKDN 178
                 7788999999999988888888887 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.02        24      17      32 ..      67      82 ..      63      83 .. 0.90
   2 ?    5.6   0.0     0.014        16      23      44 ..     157     180 ..     155     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.02
         MIT 17 agnyeeAlelYkeale 32
                 + y eA + Y+++++
  CDO68732.1 67 GKRYREARDFYTQGID 82
                689***********98 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.014
         MIT  23 AlelYkealelLlqalk.e.knee 44 
                 Ale Y eal+ +   l+   +n+ 
  CDO68732.1 157 ALERYDEALDCCDRCLQfDkDNKA 180
                 9***************97744433 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.9   4.6e+03      13      25 ..      30      42 ..      28      55 .. 0.47
   2 ?   10.7   0.0   0.00032      0.38      31      54 ..     141     165 ..     127     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.9
         RPT 13 entdDdviitayq 25
                e+++Dd  i+a q
  CDO68732.1 30 EEATDDAAISALQ 42
                4444444444433 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00032
         RPT  31 dp.sqkdklrrALkvIAeeRkSelL 54 
                 +p s+k+++r AL  IA eR  e L
  CDO68732.1 141 NPkSSKAYYRSALALIALERYDEAL 165
                 7889****************88877 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.5   2.9e+03      15      32 ..      94     111 ..      76     112 .. 0.63
   2 ?   10.7   0.1   0.00047      0.56       4      33 ..     136     165 ..     133     166 .. 0.92
   3 ?    0.2   0.2       1.1   1.3e+03       1      12 [.     167     178 ..     167     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.5
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 +++n+A + l++ ++++A
  CDO68732.1  94 LLCNRAACNLELRRSRRA 111
                 577888887777777666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00047
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                 ka+  +P++++ay+  A +l  + ++++A+
  CDO68732.1 136 KAIGVNPKSSKAYYRSALALIALERYDEAL 165
                 89999***********************96 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
      TPR_17   1 lylkaleldPnn 12 
                 ++ ++l+ d++n
  CDO68732.1 167 CCDRCLQFDKDN 178
                 799******998 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.7   3.3e+03      17      27 ..      35      45 ..      29      47 .. 0.83
   2 ?    3.8   0.2     0.091   1.1e+02       7      25 ..      61      79 ..      59      79 .. 0.84
   3 ?    9.6   0.6    0.0013       1.5       2      27 ..     147     172 ..     146     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.7
                HHHHHHHHHHH CS
       TPR_6 17 dkAlealerli 27
                d+A+ al++l 
  CDO68732.1 35 DAAISALQSLA 45
                68999***985 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.091
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAlealer 25
                +  y+k++++++A++ + +
  CDO68732.1 61 GNDYFKGKRYREARDFYTQ 79
                5569**99*******9975 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 A+y+ al++++l ++d+Al+  +r++
  CDO68732.1 147 AYYRSALALIALERYDEALDCCDRCL 172
                 9**********88******9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2492.12
//
Query:       CDO68733.1  [L=475]
Description: hypothetical protein BN946_scf184652.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   19.1   4.1    0.00099   19.1   4.1    3.1  4  zf-CCHC    Zinc knuckle
  ------ inclusion threshold ------
      0.013   15.3   1.3      0.013   15.3   1.3    3.6  3  zf-CCHC_6  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   4.1   1.1e-07   0.00099       2      18 .]     367     383 ..     366     383 .. 0.95
   2 ?   -3.9   0.4         2   1.8e+04       2       6 ..     391     395 ..     391     397 .. 0.81
   3 ?   -3.1   0.2       1.1     1e+04      11      16 ..     399     404 ..     398     404 .. 0.81
   4 !    3.4   0.5      0.01        89       2       9 ..     424     431 ..     423     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-07
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +Cy+C+  GHi++ Cp+
  CDO68733.1 367 QCYHCQAFGHISKACPH 383
                 7***************8 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
                 CTSSS CS
     zf-CCHC   2 kCynC 6  
                 kC +C
  CDO68733.1 391 KCARC 395
                 69999 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.1
                 STTTTS CS
     zf-CCHC  11 HiardC 16 
                 H  rdC
  CDO68733.1 399 HAVRDC 404
                 6789** PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.01
                 CTSSSSSS CS
     zf-CCHC   2 kCynCGep 9  
                  C nCG+p
  CDO68733.1 424 RCANCGGP 431
                 6*****86 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   2.5e-05      0.22       2      20 ..     366     382 ..     365     388 .. 0.88
   2 ?   -8.6   9.9         2   1.8e+04       2      21 ..     390     408 ..     389     418 .. 0.78
   3 ?   15.3   1.3   1.5e-06     0.013       2      27 ..     423     447 ..     422     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.5e-05
   zf-CCHC_6   2 vKCknCGAFGHtarSkrCP 20 
                 + C  C AFGH    k CP
  CDO68733.1 366 MQCYHCQAFGHIS--KACP 382
                 57*********85..9999 PP

  == domain 2  score: -8.6 bits;  conditional E-value: 2
   zf-CCHC_6   2 vKCknCGAFGHtarSkrCPm 21 
                 +KC  C    H +r   CP 
  CDO68733.1 390 LKCARCAG-NHAVRDCHCPA 408
                 79999954.69999999995 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.5e-06
   zf-CCHC_6   2 vKCknCGAFGHtarSkrCPmkcwnga 27 
                 v+C nCG   H+  S+ CP+k + +a
  CDO68733.1 423 VRCANCGG-PHKSVSSVCPIKAAAQA 447
                 9******9.5***********96554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3624.80
//
Query:       CDO68734.1  [L=1248]
Description: hypothetical protein BN946_scf184652.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-36  125.0   0.0    4.9e-36  124.3   0.0    1.3  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    1.6e-23   82.8   0.0    3.8e-23   81.6   0.0    1.7  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    1.4e-11   44.4   1.5    3.1e-11   43.2   1.5    1.6  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
    8.8e-09   35.7   0.0    2.6e-08   34.1   0.0    1.9  2  RNase_H          RNase H
     0.0062   17.2   0.1      0.017   15.9   0.1    1.7  1  zf-RVT           zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.4e-39   4.9e-36       3     221 ..     506     759 ..     504     760 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.4e-39
                 -TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS
       RVT_1   3 Kkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellr 90 
                 K+g      p+ yRpi+l  +  k+l++++a rL  ++    ll+ n +g r gr t dav   ++ +k +++k+   ++l+lD+ +aF sv++++ll+
  CDO68734.1 506 KPGkpsylvPKAYRPIALEDTSSKVLESVVARRLAGLAemHGLLPANHFGGRAGRTTTDAVlflTQRVKDAWRKGHVATVLFLDITSAFPSVNHARLLH 604
                 5556668899**************************9988899*********************9999999**************************** PP

                 GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH......HHHH CS
       RVT_1  91 kltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee......lqel 183
                  l + +vp+ l+ +i++fls+r + v+++  +s+++  + glpqGs+lSP+l+ ++  +ll+  +++ ++     ++DD++++++s++       l  l
  CDO68734.1 605 NLRKRQVPEDLVLWIQDFLSDRCTQVKFDDFTSEPLHASSGLPQGSPLSPILYLFYSADLLEVTDSKDPSKASGGFIDDTMLIVTSPTFeqniavLTDL 703
                 ****************************88889*********************************99******************99999******** PP

                 HHHHHHHHHHTT--BEGGG-EEE.......................ESSEEETTEE CS
       RVT_1 184 leaveewlkesglkinpeKtklvlft.................v.kseevkyLGvt 221
                 +  +  w k++ +++  +K +++++t                    se+ +yLG++
  CDO68734.1 704 VPQLLGWSKSHACRFDVAKFQMLHCTrnekrynplplviddhhIlPSESARYLGII 759
                 **************************************9998648*********97 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   1.1e-26   3.8e-23       2     118 ..     102     223 ..     101     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.1e-26
  Exo_endo_phos_2   2 liisvYippsd..elenlestlekllselkspkiiilGDfNakhplWgsedtds...sargeeLiefleehslsllnllksgptfkssng..ss 88 
                       i+svY+pps+  +++ l+++l++ l  +   + ii+GDfNa+hp+W+++   +   ++++e+L+ +l e++ls l l++ +pt++s ++   s
       CDO68734.1 102 SIFSVYNPPSSdsAIQPLQRALSDPLALNA--PAIIVGDFNAHHPMWSGPLVPQrtaRSDAESLLLLLAEFDLS-LALPPGTPTYWSDSHhtAS 192
                      69*********5556666666666555555..9****************544445569****************.666677899999999888* PP

  Exo_endo_phos_2  89 tiDltltsdnlals.kleleeedlgSDHrpi 118
                      t+Dl++ts++la+s +   ++  +gSDH +i
       CDO68734.1 193 TLDLVFTSTSLANSvTSCSTDYGHGSDHCAI 223
                      **************955556689*****987 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   1.5   8.6e-15   3.1e-11       2     233 .]       2     220 ..       1     220 [. 0.84

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 8.6e-15
                    EEEESTGCHHHHTHHHHHHHHHHHHHHCTT...SEEEEEEEBSCTCHHHHHHHHH.....................................TTCE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx.....................................xxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltayda...DvlgLQEvdddelsriplllal.....................................ggfl 57 
                    + N+  q             l+++l ++++   D+l+LQE    +ls+  ll+++                                        +
     CDO68734.1   2 SLNCRKQ----------PEVLKSVLNTTNPaewDLLCLQE---PPLSIDRLLSFRsprwnlvlpssaasrgegemirsviyvnnhlpsdlytQISV 84 
                    6677775..........77799******999*********...555555555555**9*9999999999999999999999999999999884444 PP

                    EEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  58 gasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapvivaGDf 153
                    ++ +               v+ + +l sl    f+ +n ++   +++pl + l                            ++++ +ap+i++GDf
     CDO68734.1  85 PSLD--------------IVALKLSLPSLSLSIFSVYNPPSSDSAIQPLQRALS---------------------------DPLALNAPAIIVGDF 139
                    4444..............588899999999999999999999999999777776...........................6689*********** PP

                    SSSTSGGGBSCGHHHHHHCTTTHH.........SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 154 Narpsdddsrvlrtrglalapapv.........glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                    Na++  ++ ++   r ++ + +            l+l++g+pt++  ++ + s+lD ++ s++la  +++   +++         +SDH
     CDO68734.1 140 NAHHPMWSGPLVPQRTARSDAESLllllaefdlSLALPPGTPTYWSDSHHTASTLDLVFTSTSLANSVTSCSTDYGH--------GSDH 220
                    ***********999999999888456677889******************************777777777777774........6999 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.3e-12   2.6e-08       4     142 ..     946    1079 ..     943    1080 .. 0.72
   2 ?   -3.6   0.0       3.3   1.2e+04      78     126 ..    1113    1165 ..    1106    1167 .. 0.65

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7.3e-12
                  EEEEEEEEEECTTTCEEEEEEECTT..EEEEEEECCCCHHH....HHHHHHHHHHHHTT.SCSEEE...EEES-HHHHHHHHCCCHHHHHTTSSSET CS
     RNase_H    4 vvvYtDGsclgnpgeggagavlykegarnisapleeaqtnn....raELsAvieaLkalksdekvn...iytDSkYvvkgitqwvhrwkknawktts 93  
                    v+tDGs +   g  ga+a++++  +++  ++++  ++n       EL  ++ aL   +s+++v+   i  D k ++ ++ +      ++ ++ ++
  CDO68734.1  946 FCVFTDGSGF--AGDIGAAAFAKGR-NQEHVRRVNLGSDNEhivfEGELAGMVLALDVIESEPRVTranILLDNKAAIRAVSK------RRPRPGQQ 1033
                  579*****77..4444555555433.344445555456666222257**********777885555555*****999997775......66666666 PP

                  TSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H   94 eqkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142 
                     +++     + lk+  +  ++++ wv+gH+Gv  gNe+aD+ Ak+a+
  CDO68734.1 1034 LV-ELFH-RRLKHLKSKRRSLSLTVVWVPGHKGV-AGNERADMEAKDAS 1079
                  66.5777.5666777888999*************.5**********985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.3
                  HCCCHHHHHTTSSSETTSSBHTT....HHHHHHHHHCHC.SSEEEEEE-SCCSS CS
     RNase_H   78 tqwvhrwkknawkttseqkpvkn....kdlaellkelak.kkkvqlkwvkgHaG 126 
                   +w  rwk  ++ t  +  +v      k++ +l+k+l + + ++  +   gH G
  CDO68734.1 1113 RDWTDRWKASKQGTRLAR-NVDPsppgKQVLKLFKDLPRrQASILTQLRSGHVG 1165
                  468899988887665555.45556677888888888877455566666666665 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   4.6e-06     0.017      31      79 ..    1151    1198 ..    1135    1202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.6e-06
      zf-RVT   31 kvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCp 79  
                  +   +l  l ++++  +  l++ ++ ss+ C+ C+   Et++H +l+C+
  CDO68734.1 1151 RQASILTQLRSGHVGLNAFLHRIKAVSSPLCSTCQS-AETVQHYLLTCR 1198
                  5555666677788888999*****************.6**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.49
# Mc/sec: 7668.60
//
Query:       CDO68735.1  [L=131]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 961.86
//
Query:       CDO68736.1  [L=1009]
Description: hypothetical protein BN946_scf184989.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-53  180.0   9.4    4.6e-30  104.1   1.0    2.6  2  PEMT        Phospholipid methyltransferase
    0.00097   19.3   0.1     0.0017   18.5   0.1    1.3  1  ApoLp-III   Apolipophorin-III precursor (apoLp-III)
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.032   14.6   0.0    1.5  1  PP-binding  Phosphopantetheine attachment site
      0.019   15.5   0.0      0.058   14.0   0.0    1.8  1  SKICH       SKICH domain


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   1.8   4.1e-26   1.8e-22       2     105 ..     216     318 ..     215     319 .. 0.96
   2 !  104.1   1.0     1e-33   4.6e-30       1     104 [.     560     663 ..     560     664 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 4.1e-26
        PEMT   2 rlilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 r i G++lia++l++ +++++ +++ g++ gd+F+ +  +lv +G++++  +P+y  +++g++Gl+Li+gs+a+l+++l ++++ + +l+f+E+ph+++
  CDO68736.1 216 RWIGGTALIAFNLWVKTEAHNVVKDYGWYWGDVFF-QRGALVFDGVFELAPHPMYSVGYAGYYGLSLIVGSYAVLFVSLAAHAAQFGFLIFFENPHIER 313
                 56789******************************.5889*********************************************************** PP

        PEMT 101 iYgkr 105
                  Yg+r
  CDO68736.1 314 TYGQR 318
                 ***97 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 1e-33
        PEMT   1 lrlilGlllialglllvlssiealgefgtfygdfFlelmd.klvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephl 98 
                 lr++lG+++i l+++ +l+s+e lg fg+f+gdfF+e+ + +l ++GiYrylnnPe v+s ++f+GlaLi+gs ++++la++ ll  +++l+ vE+ph+
  CDO68736.1 560 LRHTLGVIMIGLHIWSTLESYEVLGLFGWFFGDFFIEDFPsHLEYTGIYRYLNNPE-VFSGAAFFGLALISGSKLVFALAVVRLLSQWWFLSKVENPHM 657
                 5899********************************98878***************.9999************************************** PP

        PEMT  99 akiYgk 104
                 +k+Yg+
  CDO68736.1 658 RKLYGD 663
                 ****96 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.7e-07    0.0017      14     100 ..     660     749 ..     653     758 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.7e-07
   ApoLp-III  14 qln..lpsqeevvetiKensenlvdqlkqvikslqeelkkksdeleealkevkkkieetadklse.enPevkkkaqelqekvQsgvqslv 100
                   +  ++s+  +v++iK+ +++ ++ l++ +++  +e+k+   e++ +++ v ++ +e+++++ + ++P + + +q+++  +Q++ + l+
  CDO68736.1 660 LYGdsIRSDAGFVKVIKKVAQKNARLLESRAGKHAPEIKRVAREVKGTFDKVYEETAEVVEEFLAkSRPRISEVVQDTKVLLQQSRERLI 749
                 55566889999*************************************************9975549****************9977775 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.1e-06     0.032      35      67 .]     968    1000 ..     965    1000 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
  PP-binding   35 vellaaleeefgveiplsdlfehptlaelaayl 67  
                   ++  a+e++fgvei ++++ +  +l++la+++
  CDO68736.1  968 KRISLAIEQAFGVEIAPEVIVADANLSALANRI 1000
                  57889*************************986 PP

>> SKICH  SKICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-05     0.058      24      45 ..     791     812 ..     780     892 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
       SKICH  24 kdfkpsskDwiGlfkvgfkslk 45 
                 + ++ s kDwiG+++vg ++ +
  CDO68736.1 791 APLHHSRKDWIGIYRVGANQSN 812
                 567899***********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.49
# Mc/sec: 6136.19
//
Query:       CDO68737.1  [L=362]
Description: hypothetical protein BN946_scf184989.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2482.03
//
Query:       CDO68738.1  [L=2717]
Description: hypothetical protein BN946_scf184989.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-30  104.4   0.0    7.9e-30  103.3   0.0    1.6  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    6.9e-21   74.2   0.0    1.4e-20   73.1   0.0    1.6  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    1.1e-15   57.8   0.0      2e-15   56.9   0.0    1.4  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    9.9e-15   54.4   0.1    2.5e-14   53.1   0.1    1.7  1  Integrase_H2C2   Integrase zinc binding domain
    1.8e-12   47.5   0.0    6.7e-12   45.7   0.0    2.1  1  rve              Integrase core domain
    1.9e-09   37.4   0.0    3.5e-09   36.5   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
    5.6e-08   33.3   0.1    2.3e-07   31.2   0.0    2.2  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    4.2e-07   30.5   0.1    2.2e-06   28.2   0.0    2.3  2  Asp_protease_2   Aspartyl protease
    0.00051   19.8   0.0    0.00095   19.0   0.0    1.4  1  Asp_protease     Aspartyl protease
  ------ inclusion threshold ------
      0.012   15.8   0.2      0.041   14.2   0.2    2.0  1  Retrotrans_gag   Retrotransposon gag protein
        2.1    7.3  11.9        5.2    6.0  11.9    1.6  1  FAM199X          Protein family FAM199X
        3.3    7.7  12.6        9.3    6.3  12.6    1.8  1  Herpes_capsid    Gammaherpesvirus capsid protein
        8.1    6.7  10.5        0.1   12.7   2.7    2.0  2  zf-CCHC          Zinc knuckle
        8.4    5.5   9.7        6.2    5.9   0.0    2.7  3  Zip              ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   6.1e-33   7.9e-30       4     105 .]    1572    1673 ..    1570    1673 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 6.1e-33
                  S-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT----.---HHHHHH CS
   RT_RNaseH    4 kpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkyllskkslngrlarWal 100 
                  +p+ l tDAs +g  + +sq  + ++ r++ f+S k+++a++ny+++e+ellAiv++lk+fr++l+g++f++ tDhk+l+yl+s+k+l++r++rW+ 
  CDO68738.1 1572 EPINLVTDASLTGASGYVSQGADLQTARVVTFWSGKFNSAQQNYPVHEQELLAIVESLKRFRPLLYGTNFRICTDHKALEYLMSQKNLSPRQHRWMD 1668
                  6899****************999999*********************************************************************** PP

                  HC-XX CS
   RT_RNaseH  101 eLsey 105 
                   L+e+
  CDO68738.1 1669 VLNEF 1673
                  **998 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.1e-23   1.4e-20       1     100 []    1539    1643 ..    1539    1643 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.1e-23
  RT_RNaseH_2    1 Wteeqekafeklkealt.....sapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrh 91  
                   Wt ++++afe++ke++       +  L + +  +p+ l tDaS tg  ++ sq  d ++ r+++f+S k+++a++ny+++e+ellAiv++lk+fr+
   CDO68738.1 1539 WTATCQRAFEQVKEKVHlwrnnRRIALDYTEGAEPINLVTDASLTGASGYVSQGADLQTARVVTFWSGKFNSAQQNYPVHEQELLAIVESLKRFRP 1634
                   **************98544433678899999*************************999************************************* PP

  RT_RNaseH_2   92 yllgrkftv 100 
                   +l+g +f +
   CDO68738.1 1635 LLYGTNFRI 1643
                   *****9976 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.6e-18     2e-15      56     221 ..    1344    1475 ..    1320    1476 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.6e-18
                  ......HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHT CS
       RVT_1   56 edllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellr 152 
                   d+  +l++  ++k+ + +D k+a++++++  +    t f++p                          g  ++++l qG +++P++++ +mn+++ 
  CDO68738.1 1344 PDIDGILRNVVRHKYRSLIDGKDAYEQIRVIPEHVARTLFTTP-------------------------DGTMVSQVLQQGDINGPATYQAVMNHIFA 1415
                  55666777778899999**************************.........................99*************************** PP

                  T-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS
       RVT_1  153 elrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvt 221 
                  ++      v++ +Y DDi+i+s++ ee+ e++++v++ l++ ++ + ++K +++     + ++k+LG++
  CDO68738.1 1416 PYIG----VFMDVYLDDIVIYSDTVEEHMEHVRKVFDVLRREKFFLGADKMHFF-----AAKLKILGHI 1475
                  ***8....9*********************************************.....9*******97 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.1     2e-17   2.5e-14       3      57 ..    1899    1953 ..    1898    1954 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2e-17
  Integrase_H2C2    3 kslrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57  
                      ++lr+ +lk+aH+ ++HlG++ktle lr+ ++Wp + +d   y+++C +C+ +k+
      CDO68738.1 1899 RKLREVLLKSAHSVLAHLGTRKTLEYLRSEVWWPEIVADTAAYCRTCGVCATTKS 1953
                      689*************************************************998 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   5.2e-15   6.7e-12       4     118 ..    1971    2087 ..    1968    2088 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 5.2e-15
         rve    4 pgelwqvDvt.vvripdggg....kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvs 95  
                  p + + +D++  ++ +d       +  ++v++d  + +++ +++ +  +a ++++++ + v +++g+ per++sD+ + +ts  +r++ + lg++++
  CDO68738.1 1971 PWQFIGIDFVgPLPASD--NrlgsFDMICVIIDQLTSMVHLVPTQQTYTALDIAEVVFEHVYKLHGL-PERIISDRDTLFTSTFWRRLHELLGTELR 2064
                  55666677776555333..23467999****************************************.***************************** PP

         rve   96 ftrpgrpqdnGkvErfhrtlkde 118 
                  ++  ++pq+ G  Er++rt+ ++
  CDO68738.1 2065 LSSSYHPQTDGATERANRTMTQM 2087
                  *******************9886 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.8e-12   3.5e-09      22     131 ..    1091    1200 ..    1080    1204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.8e-12
       RVP_2   22 vlgtflvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLsknk 118 
                  ++  + +n+ p   L+d+G    F+s+++v +l+lk e L +pl ++  v +s +  + c +ve + q i+      +++l ++D iLg  +L ++k
  CDO68738.1 1091 IVVAVQINGKPIRALIDTGSMADFLSTTVVDQLGLKKEILAKPLPVQLAVHGSRSKINCCATVEFTYQTIKCARRFDIVNLDNYDAILGTPFLFQHK 1187
                  667899*******************************************************************999999****************** PP

       RVP_2  119 anidcaekkvtlt 131 
                  + i     +v + 
  CDO68738.1 1188 VAIGLNPTRVSIG 1200
                  **99888887765 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.8e-10   2.3e-07       1      90 [.    1093    1183 ..    1093    1185 .. 0.86
   2 ?   -2.5   0.0       6.3   8.1e+03      30      74 ..    2333    2376 ..    2331    2378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.8e-10
                       EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEE.EEEEEEESSSSEEEEHHHH CS
  gag-asp_proteas    1 vkvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkiggielrnv.savvlegelddlLLGldfL 90  
                       v v+ingkp+++l+DTG    ++s++++++lgl++++ +++  v+ a    + k   +++v++   +++   ++ +++ ++ d +LG+ fL
       CDO68738.1 1093 VAVQINGKPIRALIDTGSMADFLSTTVVDQLGLKKEILAKPLPVQLAVHGSRSKINCCATVEFTYQTIKCArRFDIVNLDNYDAILGTPFL 1183
                       689*******************************************999888887777788776666665525888888899999999888 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.3
                       HTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEE CS
  gag-asp_proteas   30 rlglsrkedkgkvevktangeveakrvrldsvkiggielrnvsav 74  
                       r+gl++++d ++++ + a   ++++ + + +v + ++e+  v+++
       CDO68738.1 2333 RTGLDTRKD-EPGTSEAAVSAASVAVHSFVQVPLANAEVSSVRVH 2376
                       678888886.58889999999999999999999999999998875 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.7e-09   2.2e-06       1      89 [.    1093    1181 ..    1093    1182 .. 0.70
   2 ?   -2.4   0.0       6.3   8.1e+03      29      73 ..    2332    2375 ..    2326    2383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.7e-09
  Asp_protease_2    1 vpvtinGkpvrfllDTGasttlispelaeklglkvreseltvrvsga.gge.vkarlvrldslklgglt.lknvpalvldlgeeidglLGmd 89  
                      v v+inGkp+r+l+DTG+ + ++s++++++lglk++ ++ +  v++a +g+ +k       +++  +++ +++++++ ld   + d +LG++
      CDO68738.1 1093 VAVQINGKPIRALIDTGSMADFLSTTVVDQLGLKKEILAKPLPVQLAvHGSrSKINCCATVEFTYQTIKcARRFDIVNLD---NYDAILGTP 1181
                      679********************************999999999888433324444444444444444423333444444...666677666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
  Asp_protease_2   29 eklglkvreseltvrvsgaggevkarlvrldslklggltlknvpa 73  
                      ++ gl++r++e + +++ a  + +++++ + ++ l+++++ +v++
      CDO68738.1 2332 MRTGLDTRKDE-PGTSEAAVSAASVAVHSFVQVPLANAEVSSVRV 2375
                      57799999987.999999999999999999999999999988876 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   7.4e-07   0.00095      25     123 ..    1091    1190 ..    1072    1191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.4e-07
  Asp_protease   25 lyinvevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGv.GtkkilGrvhsaevklgdlflpvalsvledkevdlllGldllkr 118 
                    + + v++ng++++a++d+G+ +  ls+++ ++ gl++ + ++   +   v G ++ + +  ++e   +    + ++ +++ ++ d +lG   l +
    CDO68738.1 1091 IVVAVQINGKPIRALIDTGSMADFLSTTVVDQLGLKKEILAKPLPVQLAVhGSRSKINCCATVEFTYQTIKCARRFDIVNLDNYDAILGTPFLFQ 1185
                    56899********************************9999999999999899999999999********************************* PP

  Asp_protease  119 hqvii 123 
                    h+v i
    CDO68738.1 1186 HKVAI 1190
                    *9987 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   3.2e-05     0.041       2      95 ..     560     651 ..     559     652 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-05
  Retrotrans_gag   2 lastslegaAkswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqldevlteeakiekflaGLn 95 
                     l++ +++++ ++ + ++v+ ++ +  + k l +a+ +  +ps++k++l+ +l + +Qg+  vr++v+  ++la + ++ +t+ ++++ f +G++
      CDO68738.1 560 LVVQFMSDKPAQFFMRHVSLRQSE-WTLKLLYEALFNYCFPSDYKARLRLRLEKSTQGKARVRDFVRDIQHLAVRFPD-VTDLQLVQIFWRGIH 651
                     677888999999999998888882.34467888888888999***********************************7.*************86 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  11.9    0.0041       5.2     226     296 ..     451     518 ..     408     523 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0041
     FAM199X 226 sassstasvgssaansaanisrahsdsnlssaaerirdsk..krskqrklqqkalrkrqlkeqrqarkerlsg 296
                 s+sss++s +s++++s++    a  d + s ++ r r+ k  + s++r+ +++a+rk+  k++r+  k+ l+g
  CDO68738.1 451 SSSSSGSSSSSESSSSSSS---ASEDEDDSDSSSRSRNHKtdRGSRERR-KKQAYRKKAHKDRRRM-KQALAG 518
                 3344444444444444444...444444444444444444103444444.4558888888877764.445555 PP

>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  12.6    0.0073       9.3      79     153 ..     407     485 ..     396     504 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0073
  Herpes_capsid  79 dekPslradrgaglsafealsltvPPetaegttg...Ggsds..sasGasGgsastlsSgpsssaaasglssgasStsdt 153
                     ++ + ++++   + +f+  ++ vP e + ++t    Gg +    +s +sG+s s+ sS+ sssa+  +  s +sS s  
     CDO68738.1 407 GNQGRRKSSHQKPVLGFKREASQVP-EGGWFSTTaaaGGRGPpdDSSSSSGSSSSSESSSSSSSASEDEDDSDSSSRSRN 485
                    4555556666666667777777887.333333320002222222335556666666666666666655444444444332 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.7   8.2e-05       0.1       2      17 ..     767     782 ..     766     783 .. 0.92
   2 ?   -2.8   1.0       6.6   8.5e+03       3       7 ..    1942    1946 ..    1941    1947 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-05
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                  C++C e+GH +r+C 
  CDO68738.1 767 RCFTCKETGHESRNCR 782
                 7**************6 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.6
                  TSSSS CS
     zf-CCHC    3 CynCG 7   
                  C++CG
  CDO68738.1 1942 CRTCG 1946
                  ****9 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.5       9.6   1.2e+04     118     165 ..     146     185 ..     117     210 .. 0.48
   2 ?    4.4   1.6     0.014        18     109     169 ..     450     510 ..     436     548 .. 0.65
   3 ?    5.9   0.0    0.0048       6.2      47     166 ..    2514    2634 ..    2512    2685 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 9.6
         Zip 118 ssesaakksvsndkveeseekedhvaeadtdadskeelrngkqekses 165
                  +es++k + sn+ ++e +e++++v+ +         +r++ qe+s s
  CDO68738.1 146 LAESSKKVCSSNERTDEFQESNRDVQVV--------DDRRERQETSNS 185
                 3345555555555555555543333332........233333333322 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
         Zip 109 ktpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeq 169
                 ++++ + ssss +++++s s+++ e+++++ +  ++++td+ s e  +++   k+ +++++
  CDO68738.1 450 DSSSSSGSSSSSESSSSSSSASEDEDDSDSSSRSRNHKTDRGSRERRKKQAYRKKAHKDRR 510
                 4444555555555555555666666666665555666666665554444444444443333 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0048
         Zip   47 vllgtaflhLlPealealeesqleee.hth....plagllvllGflllllveklltmivekksshkektpkkasssssesaakksvsndkveeseek 138 
                  +++++af   l +++e++++    ++         + g+++ +G  + +   + ++ + +k   ++e tpk++   s++ +a++++s d+  +se++
  CDO68738.1 2514 TMTADAFATFLSHSTEMQNTVARVAQeS-AriqaAVLGGTAPGGRQVSYKHTRWMKPYRPK--FAGELTPKQSGRRSAYYQASDRISRDQAGPSERG 2607
                  79******************99887532.2589999999999****************999..*********************************9 PP

         Zip  139 edhvaeadtdadskeelrngkqeksese 166 
                  +  +++ + +   k++ ++++q  ++ +
  CDO68738.1 2608 RG-GRKRGRRGGRKHHGKKQEQLGESRH 2634
                  44.2333333322222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1385  (0.0772491); expected 358.6 (0.02)
Passed bias filter:                      751  (0.0418874); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.77u 0.32s 00:00:02.09 Elapsed: 00:00:00.53
# Mc/sec: 15557.31
//
Query:       CDO68739.1  [L=548]
Description: hypothetical protein BN946_scf184989.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-40  137.5   0.0    9.6e-40  136.7   0.0    1.4  1  UCH          Ubiquitin carboxyl-terminal hydrolase
      4e-12   46.4   0.5    1.4e-09   38.0   0.5    2.4  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
    6.5e-08   32.2   0.0    1.2e-07   31.3   0.0    1.5  1  ubiquitin    Ubiquitin family
  ------ inclusion threshold ------
       0.07   13.6   0.0       0.16   12.4   0.0    1.5  1  Ubiquitin_2  Ubiquitin-like domain
       0.61   10.3   5.5        1.3    9.3   5.5    1.5  1  DUF3886      Protein of unknown function (DUF3886)


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   2.7e-43   9.6e-40       1     257 []     105     542 ..     105     542 .. 0.86

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 2.7e-43
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGT...... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfs...... 93 
                 +Gl+NlGntCymn++lQ++ +ipel+  l++       s+                l +al++l+ ++  +++++v+P++++++l++  ++f+      
  CDO68739.1 105 VGLVNLGNTCYMNATLQAMRAIPELQVALQN-------STPP-------------GLPMALRNLYTNMA-KTTESVTPSAFLAALRQAFPQFAeqtrss 182
                 69************************88888.......2222.............39************.59*************************** PP

                 ........SSSTCEHHHHHHHHHHHHHHHHCC..HCCCHHHHHHCCCTTSHHHHHH-EEEEE..................................... CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
         UCH  94 ........gykqqDaqEflaflLdqlhedlnr..evaeekwkkhlkrndslitdlfegqlks..................................... 145
                         gy qqDa+E++ +l ++l+e              +  ++ + ++++ + g+l+                                      
  CDO68739.1 183 gikallggGYAQQDAEECWVQLTNSLKEVPGLpgP-------SGFNSAQRFVDQFMTGELRRilkcdeapeepesvsyekvlkiscnisnavnymqqgi 274
                 ***************************98776440.......455555566666666666666666666666666666666666666666666666667 PP

                 .......................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B................. CS
                 .......................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
         UCH 146 .......................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk................. 201
                                        + +++rlP++L++h+ Rf ++++   k K+ ++v+fp e d+ ++++ e ++k     +                 
  CDO68739.1 275 mealdgkiekqspslgreavytsTSRMSRLPTYLTVHMVRFAWKRDigkKAKIMRRVKFPTEYDALEIATPELREKLLAVSRrlkeiekerserrkvrk 373
                 7778888888**************************************************988888777766666544433366677777777777899 PP

                 ......................................................................................EEEEEEEEEES.C CS
                 ......................................................................................xxxxxxxxxxx.x RF
         UCH 202 ......................................................................................YeLiavvvHsG.s 213
                                                                                                       YeL+a+v H+G +
  CDO68739.1 374 rtkaakpvqdkegdvqmadaaapeagsstgttdaaaapadgedkgkavmqvdleeesvyreregrelealvhpdikndvgasttgqYELVAIVTHKGaE 472
                 99999999******************************************************************************************* PP

                 TTSEEEEEEEECTTTTE......................EEEEETTEEEEE-HHCCCTT........CEEEEEE CS
                 xxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxx........xxxxxxx RF
         UCH 214 lssGHYvayiknekngk......................WykydDetvkevkeeeevls........sayiLfY 257
                 ++ GHY+ ++k++                          Wyk+dD++v+   +e ++++        say+L+Y
  CDO68739.1 473 ADAGHYIGFVKKR---IlhasplasgaasgpapdeddedWYKFDDDKVSIFPAE-KLETlsgggqdaSAYVLLY 542
                 ********99933...13457778888888888888888************987.67777899999*******9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.5   3.8e-13   1.4e-09       1     319 [.     105     516 ..     105     517 .. 0.58

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.8e-13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxx. RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlrals...........sipeasalglileee. 87 
                 +GL n  +++Y+N+ LQ+++ ip+l+ ++++++         L + l  l+  + k   +++  s Fl al+           s    s ++ +l    
  CDO68739.1 105 VGLVNLGNTCYMNATLQAMRAIPELQVALQNST------PPGLPMALRNLYTNMAKTT-ESVTPSAFLAALRqafpqfaeqtrS----SGIKALLGGGy 192
                 7************************97777777......778*********9998876.7899*********655544432220....22222222221 PP

                 xxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       UCH_1  88 eetekssaislssli...............qsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgsek.srksstlvldlkyPkpsn 170
                 +++  ++++   +l+                s +rf+ + +  el++  k   e++++ e  ++ + + +i+c+  ++ + ++++++  ld k      
  CDO68739.1 193 AQQ--DAEECWVQLTnslkevpglpgpsgfNSAQRFVDQFMTGELRRILK-CDEAPEEPE-SVSYEKVLKISCNISNAVNyMQQGIMEALDGKI----- 282
                 111..111112222211122223333333334444444444444444332.223333333.222344445555555555555555555555544..... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx....xxxxxxxx............................ RF
       UCH_1 171 ekkeakvtfasilksslerekttrawCekCkryqpteqrktvknlPpvLalnakle.ee....eelelwkt............................ 236
                                  e+        ++  r +  ++++++ +lP  L++++ ++  +    +      +                            
  CDO68739.1 283 -----------------EK------QSPSLGREAVYTSTSRMSRLPTYLTVHMVRFaWKrdigK------Kakimrrvkfpteydaleiatpelrekll 352
                 .................22......222223444444444444444444444444311111211......12222224444444444444444444444 PP

                 ......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 237 ......................................................................knwlpleiklsldedknleeklkeereka 265
                                                                                       +  l++e   +  e+++le+  + + +++
  CDO68739.1 353 avsrrlkeiekerserrkvrkrtkaakpvqdkegdvqmadaaapeagsstgttdaaaapadgedkgkavmQVDLEEESVYREREGRELEALVHPDIKND 451
                 445555556666666677788899999999999999999999999998888888899998888777665444444444444444455577777777777 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx RF
       UCH_1 266 kaekeikvYeLqsvvvhigdskesghLvslvkvaekeler............dppesqWylFNDfl 319
                    +++  YeL+++v h g + ++gh++ +vk    ++ +            d++++ Wy+F+D +
  CDO68739.1 452 VGASTTGQYELVAIVTHKGAEADAGHYIGFVKK-RILHASplasgaasgpapDEDDEDWYKFDDDK 516
                 8899999************9989*********4.44444478899999886555555*******65 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.5e-11   1.2e-07       2      68 ..       7      72 ..       4      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 3.5e-11
                EEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEE CS
   ubiquitin  2 tvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlv 68
                ++k   gk++++++++++    +K+++ + +g+p+++++++ +G +L+d+  l+ +  ++g t ++ 
  CDO68739.1  7 KIK-HAGKTHDIQLDPDQPATAFKDAVYQVTGVPPDRMKVMIKGGILKDDTDLRKVAAKPGQTFMVI 72
                455.689******************************************************999876 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.4e-05      0.16       6      48 ..       8      47 ..       4      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
                 EEETTSS.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEE CS
  Ubiquitin_2  6 itssltkavsserrfsksltieelKekLelitGtspasmrLql 48
                 i +       +++++++++   ++K+ ++++tG++p+ m++ +
   CDO68739.1  8 IKHAGK---THDIQLDPDQPATAFKDAVYQVTGVPPDRMKVMI 47
                 555555...789***************************9876 PP

>> DUF3886  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.5   0.00036       1.3      14      46 ..     345     377 ..     340     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00036
     DUF3886  14 edvlekLkakkkeLkeeeekrkeeekarreeer 46 
                 +++ ekL+a ++ Lke e++r e++k r++ + 
  CDO68739.1 345 PELREKLLAVSRRLKEIEKERSERRKVRKRTKA 377
                 6899*********************99887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3740.21
//
Query:       CDO68740.1  [L=138]
Description: hypothetical protein BN946_scf184989.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-18   64.8   0.1    6.9e-18   64.8   0.1    1.5  2  Bap31          Bap31/Bap29 transmembrane region
    2.9e-12   46.4   8.4    2.9e-12   46.4   8.4    2.0  2  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
  ------ inclusion threshold ------
      0.028   13.8   5.8      0.033   13.6   5.8    1.1  1  Rab5-bind      Rabaptin-like protein
      0.055   13.9   3.8      0.032   14.6   2.3    1.6  1  RIC3           Resistance to inhibitors of cholinesterase hom
       0.11   11.5   0.4       0.12   11.4   0.4    1.0  1  CLN3           CLN3 protein
       0.37   11.2   7.7        1.5    9.3   7.7    2.0  1  DUF2681        Protein of unknown function (DUF2681)
        4.8    7.3  10.7        1.2    9.3   7.8    1.4  2  DUF4337        Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> Bap31  Bap31/Bap29 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.1   2.7e-21   6.9e-18      79     134 ..      11      70 ..       1      71 [. 0.84
   2 ?   -2.5   0.1       1.6   4.2e+03      81      81 ..     103     103 ..      82     126 .. 0.52

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 2.7e-21
       Bap31  79 a....aaklkleaesevqarkFyaQRNlYlsGftLfLslvlrrlvtliselakleaklea 134
                 a    + +++ +ae++++arkFyaQRN+Yl+Gf+LfLslvl+r+++++ +l+++++++++
  CDO68740.1  11 AksagSGAQDVRAETNMAARKFYAQRNTYLTGFCLFLSLVLTRVFYILLDLIHAQEEYAK 70 
                 333445578999********************************************9987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
       Bap31  81 a 81 
                  
  CDO68740.1 103 D 103
                 1 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31   7.9e+02      36      44 ..      66      77 ..      64      83 .. 0.58
   2 !   46.4   8.4   1.1e-15   2.9e-12       1      48 [.      85     136 ..      85     138 .] 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.31
  Bap31_Bap29_C 36 dehskl...des 44
                   +e++kl   + +
     CDO68740.1 66 EEYAKLkneAVK 77
                   566776644333 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 1.1e-15
  Bap31_Bap29_C   1 keiekLkkeLkkkk...kDlealKkQaeglakEYDrLadehskl..desedKK 48 
                    k+ie+L+k+L++++   kD++ lKkQae+ akEYDrLa+e +    +  +dK+
     CDO68740.1  85 KQIEELQKKLAATEakvKDYDILKKQAEQNAKEYDRLATEFNSKtgN-VSDKR 136
                    79*********99999************************9888744.44554 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.8   1.3e-05     0.033     215     275 ..      65     125 ..      59     138 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
   Rab5-bind 215 eleeikvekeslekslaektrqldklqtikselEeqlkelekekaaveqlvleeknkaqrL 275
                 + e  k+  e +++ +a++t+q+++lq+     E+++k+ +  k ++eq + e+ + a+  
  CDO68740.1  65 QEEYAKLKNEAVKSPKADQTKQIEELQKKLAATEAKVKDYDILKKQAEQNAKEYDRLATEF 125
                 55677899999*******************************************9988876 PP

>> RIC3  Resistance to inhibitors of cholinesterase homologue 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.3   1.3e-05     0.032      88     139 ..      55     100 ..      19     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
        RIC3  88 lYtllKikskkkkekskeakakkkakenakkkteteeeLeeLqerLaeTEra 139
                 +Y+ll +  ++++     ak k++a ++ k +++  +++eeLq++La TE  
  CDO68740.1  55 FYILLDLIHAQEEY----AKLKNEAVKSPKADQT--KQIEELQKKLAATEAK 100
                 56666666555333....4444444444444444..6*************76 PP

>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   4.8e-05      0.12     150     231 ..      43     129 ..      13     135 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.8e-05
        CLN3 150 vslvlPlllllsyflllekkkskkeakaeeeeeeyekleeeeeeee.....eeseeeelleseaasaaeeeeeeesselkkslkekl 231
                 ++l+l l+l+ ++++ll+  ++++e+ + ++e+ +++ ++++++ e      +++e++++++++ ++++e++++e  +l++++++k+
  CDO68740.1  43 FCLFLSLVLTRVFYILLDLIHAQEEYAKLKNEAVKSPKADQTKQIEelqkkLAATEAKVKDYDILKKQAEQNAKEYDRLATEFNSKT 129
                 578899999999999998877776666555553222222222222224443445566666677777777777766677777777765 PP

>> DUF2681  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.7   0.00058       1.5      19      65 ..      55     113 ..      38     123 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00058
     DUF2681  19 aylswqlkkar............kknaklqaekqqlkvekavaeaevknakvkqkneen 65 
                 +y+ + l  a+               a  +++++ l+ + a+ ea+vk + + +k+ e+
  CDO68740.1  55 FYILLDLIHAQeeyaklkneavkSPKADQTKQIEELQKKLAATEAKVKDYDILKKQAEQ 113
                 444444433333355555555546778889999******************96665554 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         4     1e+04      71      79 ..      21      29 ..       7      39 .. 0.46
   2 ?    9.3   7.8   0.00045       1.2      56     113 ..      65     128 ..      59     132 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4
     DUF4337 71 laaavdkki 79
                 +a+++ ++
  CDO68740.1 21 VRAETNMAA 29
                222222222 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00045
     DUF4337  56 eleqlelllkak......aeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeanea 113
                 ++e+++l+++a       + ++ ++ +kk a++++k++ y+  kk+ +++Ake+++ ++e n +
  CDO68740.1  65 QEEYAKLKNEAVkspkadQTKQIEELQKKLAATEAKVKDYDILKKQAEQNAKEYDRLATEFNSK 128
                 4444444444443342234555566778888888888888888**********99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2223  (0.123989); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 991.89
//
Query:       CDO68741.1  [L=554]
Description: hypothetical protein BN946_scf184989.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-62  212.4   0.0    1.2e-47  162.7   0.0    2.1  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.9e-17   8.8e-13       1     276 [.      37     302 ..      37     310 .. 0.76
   2 !  162.7   0.0   6.8e-52   1.2e-47     278     446 ..     345     515 ..     334     534 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 4.9e-17
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkkl 98 
                 Ppgp+ lp++gn++ +  ke+ +  +r+l+ kyg++  l   +++ +vls+ ea+  +l k+++  s+r d++l++       + +++f+++ ++w++ 
  CDO68741.1  37 PPGPPGLPILGNAFDIP-KEQAWIPFRDLSSKYGDVIALSALGRTLIVLSSVEAAVDLLDKRSAIYSDRADSVLVEM---IGWTWNLAFKRYgDDWRRV 131
                 99**************9.5888889********************************************99999998...6777888888888****** PP

                 HHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH CS
        p450  99 Rrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp 196
                 Rr++ ++++ + +  ++ ++ ++ ++dl+++l    +++   d+ + +    + +i + + g + d+++++   ++++a e+ + +  ++   l+ + p
  CDO68741.1 132 RRLFWQHFQPN-AVgQYQAVQQRDVRDLLRRL---LNAP--ADLDDEMKLTLTKTILNAVHGLPKDSVTHRYV-DILTASEAGIAEAFTPGAFLVEFLP 223
                 *********99.66678888777777776665...5677..78999999999999999999999998887755.8888888877776677778888888 PP

                 HHTCCSCHH....HHHHHHHHHHHHHHH.HHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHH CS
        p450 197 llkylptkl....lrklkeavkklkdll.dklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvd 276
                 +l+ +p +     +++  + ++ ++d + ++ +e   e ++   +s+ ++l  ll++   ++++  l+++ ++ t+  + f+G++
  CDO68741.1 224 WLRHVPPWVpgagWQRKVREWRGQSDAIrEEPFEAAMEAINCG-DSEPSMLTELLEKA--SEDG--LDEDAIKDTTA-VAFGGQH 302
                 8887766643222444444444444444034455555555555.57777777777774..4443..66666666554.4455555 PP

  == domain 2  score: 162.7 bits;  conditional E-value: 6.8e-52
                 HHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTT CS
        p450 278 tsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpev 376
                 t++t+  +++ ++ +P++q++ + E+  ++g +r p ++d+++lpy+da++k +LR h+vvpl++ +++ ++ +  g  ip+G +v++n++a+++dpev
  CDO68741.1 345 TAATVHAFILAMILHPSAQQRAQSELAAAVGPDRLPVHADRTSLPYVDATVKDILRWHNVVPLGVAHRCIREDEYHGWRIPEGAIVMPNAWAILHDPEV 443
                 899***************************999****************************************************************** PP

                 SSSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEE CS
        p450 377 fpnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppi 446
                 fp+P++F+peRFl e+g  +s++ +  +++FG+G+R+C+G+++A+  l++++a+lL+ F+++   +++ +pi
  CDO68741.1 444 FPEPDVFRPERFLGEDGkpRSDVLDPGSVAFGFGRRICPGQHFAEDALFIAIASLLHVFDFSHALDEQGKPI 515
                 *****************9988899*********************************999986544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3837.97
//
Query:       CDO68742.1  [L=524]
Description: hypothetical protein BN946_scf184989.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-66  223.3   0.0    8.2e-66  222.6   0.0    1.3  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   0.0   4.6e-70   8.2e-66       1     445 [.      44     487 ..      44     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: 222.6 bits;  conditional E-value: 4.6e-70
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHH CS
        p450   1 PpgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklR 99 
                 Ppgp+ +p++gnll +   e + +++ ++++kyg++ +l + +++++vl+++ a+  +l k++++ s+rp + +++     ++   vl   ge+w++ R
  CDO68742.1  44 PPGPPGVPILGNLLDFP-AEYPPDAYLDMSRKYGDVISLTVFGQTFIVLNSATAAIDILEKRSANYSDRPPSIVIEM--TGWNWALVLKRYGERWRRVR 139
                 99**************9.5888888*******************************************988888887..6798888888888******* PP

                 HHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH CS
        p450 100 rfltptltsfgkl.sleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp 196
                 r + ++++ + +l + +++   e+++++++l k+ g  +  + + el+s   l+    i+ g + + +  + +   + a ee + ++  +s+ ++ lfp
  CDO68742.1 140 REIWQQFHPN-ALgKHRATQLTESRRFLRRLYKDYGVVDlPMQTMELFSATNLT----IVHGLPQKDMSRH-FIHDLIASEEGFAEVFGPSTFIVELFP 232
                 **********.88888999999**************995444444444444444....4445554434444.444444445555555588999****** PP

                 HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC......SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
        p450 197 llkylptkllrklkeavkklkdlldklieerretldsa......kksrrdfldalllakkekkgesklsdeelaat.vlellfaGvdTtsstlswaLye 288
                 +l+ lp+++  +    +kk+++ +++    r + +  a       + + + l al++  ++ +g++  ++e ++++ +  +++aG+dT ++tl  ++  
  CDO68742.1 233 WLRHLPSWFPGMGW--QKKVSGWTQESDALRDDPWIAAknamarGELKPSILTALMEGVSQLEGKEAETEEVIVKEiTSSIYGAGTDTGAATLYSFFCA 329
                 **999988754444..45666666666666666655555555554578999*******97777775566666666516789****************** PP

                 HHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGG CS
        p450 289 LaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeR 387
                 ++ +Pevq++ + E+d v+g +r p+y+d+++lpy +a++kE+LR h+v+pl+ +++++++ + rg  ipkG+++  n++++++dp+v+p+P +F+peR
  CDO68742.1 330 MLIHPEVQKRAQAELDAVVGPDRLPEYSDRSSLPYINAIVKEVLRWHNVSPLGASHYAMEEDEYRGWRIPKGSIITANIWGILHDPDVYPEPSVFRPER 428
                 *******************999***************************************************************************** PP

                 GB-TTS.CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGE CS
        p450 388 Fldekg.nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdppp 445
                 + ++ +  +++ + a + FG+G+R+C+G+ +++  l++ ++++L+ F++ +  +++ +p
  CDO68742.1 429 YYKDGKvVTDGLDPATIVFGFGRRICPGRYFGEDSLFINISSVLHVFDLLPALDKSGKP 487
                 *9997786679**************************************9865555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3834.18
//
Query:       CDO68743.1  [L=1087]
Description: Glycoside Hydrolase Family 115 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     8e-128  426.6   3.3   1.1e-127  426.2   3.3    1.1  1  Glyco_hydro_115  Glycosyl hydrolase family 115
      3e-55  186.7   0.0    5.6e-55  185.8   0.0    1.5  1  GH115_C          Gylcosyl hydrolase family 115 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_115  Glycosyl hydrolase family 115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.2   3.3  1.2e-131  1.1e-127       2     339 .]     274     612 ..     273     612 .. 0.97

  Alignments for each domain:
  == domain 1  score: 426.2 bits;  conditional E-value: 1.2e-131
                      E--SSSEEEEE--SGCCCHHHHHHHCCS-.........SSSHHHHHHHHHHHHHTT--EEE---TS--HHHHSTCHHHHHHHHT-EE---TTST CS
  Glyco_hydro_115   2 gepsvkYRGiFiNDedpalsnWakekfge.........kinkefyekvfellLRlkaNylwpamwssafaeddpenqklAdeygivmgtsHaep 86 
                      g+p+vkYR+i +NDe+pal+nWa ekf++          +n+ fy+kvfel+LRlkaNylwpa+w+safa dd+ nq lA+ ygivmgt+H+ep
       CDO68743.1 274 GTPTVKYRAILLNDEQPALQNWAFEKFTNgkgapltnsPFNHFFYSKVFELMLRLKANYLWPAIWASAFAIDDTMNQPLANWYGIVMGTTHEEP 367
                      79**************************9***************************************************************** PP

                      TT--HHHHHHSH--S-S-HHHHHHHHHHHHHHHHHHHTTS-B-EE-S---TTCCG-SSHHHHHHHHHHHHHHHHHHHHHHHHCTS.SGGGS-EE CS
  Glyco_hydro_115  87 llratveewkkkkkgewdystnkealkeywregverakklesvvtlGmRGegDealelaeeeakielleeviadQrkilkevvgk.dveevpqv 179
                      ++r+t  ew+  ++g+wdy+ n +++++yw egv+r+k++e+++t+GmRG    +    +  + i lle++++dQr il + ++  dv+++pqv
       CDO68743.1 368 MMRSTPVEWDLFGQGPWDYQANAQNIYNYWVEGVKRSKDYENIFTVGMRGAVPLP----A-GEGIPLLEKAVSDQRGILMNIFNIsDVTTIPQV 456
                      *****99*******************************************99888....3.469******************886699****** PP

                      E---TCHHHHHHTT----TTSEEEEEB-SSS-BS----CCHHHSTT-EEEEEESSB-SSS--B-SS----HHHHHHHHHHHHHTT--SEEEEE- CS
  Glyco_hydro_115 180 ltlYkEvqelyeaglkvpddvtllwaDdnygnvrrlpteeerkrkggaGvYYhfdyvgsprsykwlntvqlekiweqlkkayergadklwivNv 273
                      +tlYkEvq +ye+gl+vpddvtllw+Ddn+gn+rr+pt +er+r+ggaG+YYh+dyvg+pr+ykw++t       eq+++a++r+a+++w++Nv
       CDO68743.1 457 WTLYKEVQGYYEEGLQVPDDVTLLWSDDNWGNIRRYPTVSERNRTGGAGIYYHVDYVGQPRDYKWITT------FEQMSTAVARDATRIWVLNV 544
                      ******************************************************************86......58****************** PP

                      TTSTT-HHHHHHHHHHHH-HHHCHCGGHHHHHHHHHHHHC-..CCCHHHHHHHHHHHHHHHCCS-GGG CS
  Glyco_hydro_115 274 gdlkpleleisffldlawdaekvkaekveeflkawaereFg..eeeaeeiaeilekysklaarrkpEl 339
                      gdlkp+e++++ffl++awda ++++ ++ +f+++wa+reF+  +++a+e+a+i+++ ++ ++rrkpEl
       CDO68743.1 545 GDLKPYEMHTEFFLTYAWDAARWTHMNIGSFVNSWAQREFDldASDAAEVAAIMHNLTRHNSRRKPEL 612
                      ****************************************766999********************96 PP

>> GH115_C  Gylcosyl hydrolase family 115 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   6.2e-59   5.6e-55       1     172 []     903    1083 ..     903    1083 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 6.2e-59
                  SEE-BTTEEEEETT--SEEE-BTTBEEEEEET-TTTSEEEEEES--SS---..--SS-EEEEEEEESS....-EEEEEEEEE------ST.T---EE CS
     GH115_C    1 gFvesdgyvsieAehytrkkssegvkwevlpdlGrtlsgvtlfpvtaesqe..aseapsLeYdfytfs....agevtvtlylsptlnlnp.erplry 90  
                  gFve+dg vsieA+h+tr+++ +g++w ++p+lGrt+sgvt++p   ++ +  a+++ps+eYdfy+f+     g+vt+t+ +sp+ln    +rpl +
  CDO68743.1  903 GFVEGDGTVSIEAAHATRNTTVQGITWIEIPGLGRTHSGVTPWPRGGNELNftAGAGPSIEYDFYLFNtiaqGGNVTITTLVSPSLNGLGdDRPLGL 999 
                  8********************************************99987788*****************999**************99989***** PP

                  EEEETTS--EEEETTTT-....-HHHHH...HHHHHS-EEEEEEEEE.-SEEEEEEEEE-STT-EEEEEEEESS-----SS---- CS
     GH115_C   91 avslDdeepqtvdlvpdeeagslpegWe...kavadnvrkrttevtvlkpGkhtLkiwavdpgvvleKividlgglkeSylGppe 172 
                  a+++Dde+p+t  +vp  ++g+lp+gW+    +va+n+ ++ + ++v +pG+htLk+w+++p+vv++Ki+id+gg+k+S+lGppe
  CDO68743.1 1000 ALQIDDEQPKTSYFVPPATPGDLPDGWDgtdGWVANNIIQVPMVFQV-QPGAHTLKVWMIEPAVVVQKIIIDTGGVKPSFLGPPE 1083
                  ***************************98889***************.************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1087 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7394.12
//
Query:       CDO68744.1  [L=473]
Description: hypothetical protein BN946_scf184989.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-115  385.1   0.0   3.9e-115  384.8   0.0    1.1  1  Aminotran_3      Aminotransferase class-III
     0.0011   18.3   0.0     0.0026   17.1   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.077   12.1   0.0       0.11   11.7   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.8   0.0  6.5e-119  3.9e-115       2     404 ..      48     446 ..      47     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 384.8 bits;  conditional E-value: 6.5e-119
                  C-TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHH CS
  Aminotran_3   2 vareednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseA 99 
                   a+++++l++v + a+G+ ++d +gk+y+D++s++++vn+Gh+hP++v  + eqa+kl++ s +a+ n+   ++a+k++++++   d+v+ +n+G+eA
   CDO68744.1  48 GAHNYHPLPVVFESAKGAKVWDPEGKEYIDMLSAYSAVNQGHCHPRIVGTLIEQAQKLTLSS-RAFYNSVFGRFAQKITEMFGY--DMVLPMNTGAEA 142
                  688999999****************************************************9.*********************..************ PP

                  HHHHHHHHHHHHHHTS..HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEE CS
  Aminotran_3 100 vetAlKlarkyarekk..atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaA 195
                  vetAlKlark+a+ekk   + ++ i +  g+fHGrtlg +s++++ ++ + +fgp l  v   +++d  v+  +      ++  ++al + + +++aA
   CDO68744.1 143 VETALKLARKWAYEKKgvPDGQAIIFSAAGNFHGRTLGVISMSTD-PESRGGFGPYLDAV-GPEFEDHGVV--KTIRYGEISDLARAL-ELHGKNTAA 235
                  ***************98777888888999****************.*********97655.3344443333..332233344444444.589****** PP

                  EEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--TTT CS
  Aminotran_3 196 vivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsTfg 292
                  ++vEpiqge+G+vv+++++la++++lckkh+vl+i DE+qtG+ rTGk+ ++eh++v pD+++l+Kal+gG +p+savla+++vm  ++pg+hgsT+g
   CDO68744.1 236 FLVEPIQGEAGIVVPPEGYLAQAQALCKKHNVLFICDEIQTGLCRTGKMLCCEHDNVRPDVILLGKALSGGvYPVSAVLADRDVMLCIRPGEHGSTYG 333
                  ************************************************************************************************** PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC...HHHHHHHHHCTEE-EEETTTEEEE--- CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke...keilkkakekGvlilsaGdnvirllpp 387
                  Gnpl cava+ +l+++ ee+l ++a+ lg++++++ +++++    +k++Rg+Gl+ a+ + ee+  k    ++++  +k  Gvl ++++ n+ir++pp
   CDO68744.1 334 GNPLGCAVAMTALDVLVEENLSQRAEVLGEKFRSAIRAFNSP--LVKTIRGRGLLNAVVINEESSSKGrtaWQLCLLLKSRGVLAKPTHVNIIRFAPP 429
                  ***************************************955..8*************88888887769999************************** PP

                  TT--HHHHHHHHHHHHH CS
  Aminotran_3 388 liitdeeidelleilkk 404
                  l+i++e++ ++++i+k 
   CDO68744.1 430 LVISEEDLMKAIDIIKS 446
                  **************987 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.4e-07    0.0026      32     167 ..     115     272 ..     111     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.4e-07
                      HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHH.........HHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.......... CS
  Beta_elim_lyase  32 ktvnrLedavaelfgkeaalfvpqGtaAnsill.........killqrgeevivtepahihfdetgaiaelagvklrdlknkea.......... 106
                      + + r++++++e+fg++ +l++ +G  A + +l         k  +  g+++i++  +++h ++ g i+   + + r   ++            
       CDO68744.1 115 SVFGRFAQKITEMFGYDMVLPMNTGAEAVETALklarkwayeKKGVPDGQAIIFSAAGNFHGRTLGVISMSTDPESRGGFGPYLdavgpefedh 208
                      5678999********************9999996666666655555566777777777777777777766555544444444448888999*** PP

                      ......TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HH.HHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 107 ......GkmdlekleaaikevgaheekiklisltvTnntagGqvvsle.elrevaaiakkygiplhlD 167
                             + ++ +l++a++    h +++++ +++      +G vv++e +l++++a++kk+++ +++D
       CDO68744.1 209 gvvktiRYGEISDLARALEL---HGKNTAAFLVEPIQGE-AGIVVPPEgYLAQAQALCKKHNVLFICD 272
                      99966644456667777777...7779999999987774.7999988758***************999 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05      0.11     151     340 ..     235     431 ..     211     442 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.8e-05
                    EEEEESS-TTT--B--HHH.HHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHH CS
  Aminotran_1_2 151 vilvesphNPtGtvatlee.leklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrk 245
                     +lve ++   G v ++e  l +  +l+kk+n+l ++De+  g++ + +     +++ ++   ++i+ + + + G++   v ++l++ +v  ++r 
     CDO68744.1 235 AFLVEPIQGEAGIVVPPEGyLAQAQALCKKHNVLFICDEIQTGLCRTGKML---CCEHDNVRPDVILLGKALSGGVYP--VSAVLADRDVMLCIRP 325
                    555555555566665555414455567*******************97632...333333333577766666669999..**************** PP

                    HHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH...CHHHHHHH.........HHHT CS
  Aminotran_1_2 246 lsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae...takelskk.........Llee 327
                       + ++    l+ a++++al+   l++++l+++++ l ++ ++   +++++ +k +    g++  +++++e   +   +++          L++ 
     CDO68744.1 326 GEHGSTYggNPLGCAVAMTALDV--LVEENLSQRAEVLGEKFRSAIRAFNSPLVKTIRG-RGLLNAVVINEEsssKGRTAWQLclllksrgvLAKP 418
                    *9999999666777777777766..46779*********99999999998887777776.666666666666455444445547755556656666 PP

                    CTEEEEEGGGGTS CS
  Aminotran_1_2 328 vgvyvtpgtsftv 340
                     +v+++++ ++ v
     CDO68744.1 419 THVNIIRFAPPLV 431
                    6666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3314.26
//
Query:       CDO68745.1  [L=638]
Description: hypothetical protein BN946_scf184989.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4340.09
//
Query:       CDO68746.1  [L=526]
Description: hypothetical protein BN946_scf184989.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4051.69
//
Query:       CDO68747.1  [L=370]
Description: hypothetical protein BN946_scf184989.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-24   85.4   0.5    1.3e-23   83.7   0.5    2.0  1  Fes1       Nucleotide exchange factor Fes1
     0.0027   18.1   0.6      0.026   14.9   0.1    2.8  2  HEAT_2     HEAT repeats
  ------ inclusion threshold ------
      0.083   13.2   0.6        3.6    8.1   0.1    3.1  2  HEAT       HEAT repeat
       0.12   12.9   0.8         21    5.8   0.0    3.7  3  HEAT_EZ    HEAT-like repeat
       0.14   12.2   0.4         14    5.9   0.0    3.7  4  Arm        Armadillo/beta-catenin-like repeat
       0.23   10.0   0.1        1.2    7.6   0.1    1.8  1  Adaptin_N  Adaptin N terminal region


Domain annotation for each model (and alignments):
>> Fes1  Nucleotide exchange factor Fes1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.5   4.4e-27   1.3e-23       1      93 []       1      79 [.       1      79 [. 0.90

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 4.4e-27
        Fes1  1 lneLLkWsienstaedasaseqeaesaaeaakaskekldpeildallggpsdaelmkeamevledeevtlenkliAldnleqlieslDnAnnL 93
                +++LL+Wsi+n          ++++++ ++++   ++ldp i+d++lg + d elmkea++v+ de+++ +++l+Aldn+e+lie++DnAnn+
  CDO68747.1  1 MESLLRWSIAN----------SDPNRPPPQPR---SDLDPGIIDMILG-KPDPELMKEALAVAVDETKDEDDRLQALDNFEMLIEQIDNANNM 79
                799******98..........24455555444...89***********.*******************************************8 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.088   2.6e+02      12      56 ..      54     110 ..      43     134 .. 0.56
   2 !   14.9   0.1   8.5e-06     0.026      11      83 ..      96     193 ..      85     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.088
      HEAT_2  12 pdpevrraairaLg....rignp......ealpaLvelled..edpavRraaaeaLg 56 
                 +d++ r +a+++      +i+n       +  + L+ ll++  ++++++r++ + Lg
  CDO68747.1  54 KDEDDRLQALDNFEmlieQIDNAnnmeklKMWEPLHGLLTNptSSEEIQRQVLWILG 110
                 555666666655555555343333344445566666666542245667766666666 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.5e-06
      HEAT_2  11 dpdpevrraairaLg...rignp..........ealpaLvell..ededpavRraaaeaLg...........aigdpealpaLkellddddddvvReaA 83 
                  +++e++r++++ Lg   + +np          + l++L+++l  +  +  +R  a+ aL+           +++    +++L+++l+d d  v+R  A
  CDO68747.1  96 TSSEEIQRQVLWILGtavQ-NNPppstpyylalSPLRTLLSFLspTVRSGKTRSKAVYALSgllkhnaaavhQMAAAGGWDVLRDALQDSDITVRRKVA 193
                 678899*********7642.4445777777777789999999954447789*********75555555544455667789*****99987777766554 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.14   4.3e+02      16      30 ..     146     160 ..     142     170 .. 0.87
   2 ?    8.1   0.1    0.0012       3.6       5      27 ..     177     199 ..     175     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHC CS
        HEAT  16 VReaAakaLgalaev 30 
                  R+ A++aL  l+++
  CDO68747.1 146 TRSKAVYALSGLLKH 160
                 699999999999876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 l  +l+D++  VR+ +a  L +l
  CDO68747.1 177 LRDALQDSDITVRRKVAFLLNTL 199
                 6789**************99987 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0069        21       3      26 ..     101     124 ..      99     157 .. 0.57
   2 ?   -0.1   0.0      0.49   1.5e+03      29      49 ..     150     171 ..     145     173 .. 0.63
   3 ?    3.0   0.1     0.052   1.6e+02      33      52 ..     177     196 ..     175     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0069
     HEAT_EZ   3 vRraAawaLGrlaggepellqplv 26 
                 ++r ++w LG++ +++p+   p+ 
  CDO68747.1 101 IQRQVLWILGTAVQNNPPPSTPYY 124
                 7999*******8888887744433 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.49
     HEAT_EZ  29 ilpaLlalLnddsdeV.RaaAa 49 
                 ++ aL  lL++  ++V + aAa
  CDO68747.1 150 AVYALSGLLKHNAAAVhQMAAA 171
                 4455666777777777777776 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.052
     HEAT_EZ  33 LlalLnddsdeVRaaAagaL 52 
                 L  +L+d++ +VR ++a  L
  CDO68747.1 177 LRDALQDSDITVRRKVAFLL 196
                 6668999999******9988 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0047        14      20      37 ..      91     110 ..      86     111 .. 0.87
   2 ?    0.0   0.0      0.33   9.8e+02      13      29 ..     126     142 ..     126     144 .. 0.81
   3 ?   -0.4   0.0      0.45   1.3e+03      14      33 ..     151     170 ..     146     173 .. 0.78
   4 ?    0.1   0.0      0.31   9.3e+02       9      31 ..     169     191 ..     161     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0047
                 HTT..TSSHHHHHHHHHHHH CS
         Arm  20 LLs..sedeevqeeAawALs 37 
                 LL+  + +ee+q++++w L+
  CDO68747.1  91 LLTnpTSSEEIQRQVLWILG 110
                 7888899**********986 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.33
                 HHHHHHHHTTTSSHHHH CS
         Arm  13 avppLvrLLssedeevq 29 
                 a+ pL +LLs  +++v+
  CDO68747.1 126 ALSPLRTLLSFLSPTVR 142
                 689******97777775 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.45
                 HHHHHHHTTTSSHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAa 33 
                 v +L  LL++    v + Aa
  CDO68747.1 151 VYALSGLLKHNAAAVHQMAA 170
                 55788999999988888887 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.31
                 HHTTHHHHHHHHTTTSSHHHHHH CS
         Arm   9 ieaGavppLvrLLssedeevqee 31 
                   aG+ ++L + L++ d +v++ 
  CDO68747.1 169 AAAGGWDVLRDALQDSDITVRRK 191
                 5678889999******9999985 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0004       1.2     407     460 ..      76     137 ..      38     199 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0004
                 HSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT..........HHHHHHCTT CS
   Adaptin_N 407 kvpelheeiiekLaellek.ieseearaaaiWllGeygelvsn......te.sasdllrsla 460
                  +  ++ ++ e L  ll++  +see++++++W+lG  +++ +          s+ + l s++
  CDO68747.1  76 ANNMEKLKMWEPLHGLLTNpTSSEEIQRQVLWILGTAVQNNPPpstpyyLAlSPLRTLLSFL 137
                 333334455667777888899**************988887765555553334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2453.52
//
Query:       CDO68748.1  [L=410]
Description: hypothetical protein BN946_scf184989.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-33  116.3   6.1    1.5e-33  115.7   6.1    1.1  1  DHHC      DHHC palmitoyltransferase
  ------ inclusion threshold ------
       0.29    9.8   3.7       0.42    9.3   3.7    1.1  1  TRP       Transient receptor potential (TRP) ion channel
        6.4    7.0  11.4         15    5.8  10.8    1.8  1  FYVE      FYVE zinc finger


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   6.1   2.5e-37   1.5e-33       4     130 ..     187     306 ..     185     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 2.5e-37
        DHHC   4 elkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvl 102
                 e ++C t    kp r++Hcr C+ cvl++DHhCpw+++c+G+rN+++Fl+fl++ ll++i+++ +++    +  ++++++ +     +    ++ +++l
  CDO68748.1 187 EYRYCHTDGFSKPMRAHHCRACGTCVLKYDHHCPWIGQCVGARNHRFFLIFLFWALLFCIWTFSTSVALNARAASQRTFFNVD---GQ----QVAIMAL 278
                 679************************************************************99999999988888886555...33....4999*** PP

        DHHC 103 sllfllllgllllfhlylilrnlTtiea 130
                 s lf++++g+l+  h+ li++ + t e 
  CDO68748.1 279 SGLFIIFTGVLVASHVDLIMHAQSTVES 306
                 ***********************99986 PP

>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.7     7e-05      0.42     203     259 ..     231     304 ..     221     311 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 7e-05
         TRP 203 lrlilifffqllvlclfeftqrdsaa....................vvvlAvillalflgvllffafrvlitarksk 259
                  r++lif f  l++c++ f++  s a                    +++l++ l+++f+gvl+   +  +++a+  +
  CDO68748.1 231 HRFFLIFLFWALLFCIWTFST--SVAlnaraasqrtffnvdgqqvaIMALSG-LFIIFTGVLVASHVDLIMHAQSTV 304
                 699*****************4..555558999***********964445554.688999999999999999888755 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.8    0.0025        15      15      36 ..     191     213 ..     186     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0025
                 T--.B--SSS--EE-TTT--EE- CS
        FYVE  15 Cak.kFsllrrrhhCrlCGkvvC 36 
                 C++  Fs  +r hhCr+CG +v 
  CDO68748.1 191 CHTdGFSKPMRAHHCRACGTCVL 213
                 5442588889*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2857.22
//
Query:       CDO68749.1  [L=86]
Description: hypothetical protein BN946_scf184989.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 604.83
//
Query:       CDO68750.1  [L=295]
Description: hypothetical protein BN946_scf184989.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-31  107.0   0.0    1.2e-21   77.4   0.0    2.3  2  Cullin_binding  Cullin binding
    6.7e-09   35.4   0.0    1.3e-08   34.5   0.0    1.5  1  UBA_4           UBA-like domain


Domain annotation for each model (and alignments):
>> Cullin_binding  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   3.6e-10   3.2e-06       2      40 ..     124     163 ..     123     171 .. 0.92
   2 !   77.4   0.0   1.3e-25   1.2e-21      35     120 .]     177     286 ..     164     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 3.6e-10
  Cullin_binding   2 lkkkleklrkel.sdkekfkkvYeftFelakeegqksldl 40 
                     +k++le+lr++l +d+++f++vY++tFe+++ +gq+sl +
      CDO68750.1 124 MKTTLETLRRQLaTDTDYFRRVYNYTFEFSRPPGQRSLGM 163
                     8999********88889********************976 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 1.3e-25
  Cullin_binding  35 qksldletaielwklllkekea............................tkkeelleqwieFleeekkekkaiskDtWnqlleFakkvkededl 101
                     +  + l++a  +w +l+++  +                             +kee++++w+eFle++    k++skD+W+++leF++++  d+++
      CDO68750.1 177 RNCVGLDMAQGFWAILIPHGLQggalahvssaqdgdgdermgaageggeeGWKEEYTQWWFEFLEKS--GLKGVSKDVWQMFLEFVRTI--DSKF 267
                     456789***********87644678889999******************989999*********666..569***************88..569* PP

  Cullin_binding 102 skYdeegAWPvliDeFvey 120
                     +kYd e+AWP++iD+Fve+
      CDO68750.1 268 EKYDPEAAWPSTIDDFVEF 286
                     *****************97 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.4e-12   1.3e-08       1      41 [.       2      41 ..       2      43 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.4e-12
       UBA_4  1 deliaqFqaiTGadeekArqlLeannWdLerAislyFdsge 41
                d++iaqF ++TGa++ +Ar++L+     L++A+++y++++ 
  CDO68750.1  2 DDKIAQFSSVTGASTKEARRYLTKYK-RLDQALDAYYNDPS 41
                79***********************9.***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:01.42
# Mc/sec: 630.63
//
Query:       CDO68751.1  [L=272]
Description: hypothetical protein BN946_scf184989.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1873.87
//
Query:       CDO68752.1  [L=265]
Description: hypothetical protein BN946_scf184989.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-27   94.6   0.0    4.8e-27   94.3   0.0    1.1  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    1.6e-07   31.1   2.7    2.7e-07   30.4   2.7    1.4  1  zf-CCHC          Zinc knuckle
     0.0062   16.5   0.3      0.016   15.1   0.3    1.7  1  zf-CCHC_3        Zinc knuckle
  ------ inclusion threshold ------
      0.033   14.5   0.0      0.053   13.8   0.0    1.3  1  Retrotrans_gag   Retrotransposon gag protein
       0.12   12.2   1.1       0.23   11.4   1.1    1.4  1  zf-CCHC_6        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   1.3e-30   4.8e-27       2     136 ..      58     192 ..      57     194 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 1.3e-30
  Retrotran_gag_2   2 kkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkvv 95 
                      + + + al +I lsi+++++e+++++ t  ++W +L ++yek+s+an+++l++++++++ +++  ++++ n+++ l+n+L+a+gv+++ded+v 
       CDO68752.1  58 DLQAENALTIIGLSIEPDQYEYIRDARTGPAAWAALRAVYEKNSRANRIALKREFYTTRHDPNAPIREYTNRVTALANRLKAIGVTLKDEDIVD 151
                      556789**************************************************************************************** PP

  Retrotran_gag_2  96 llLasLPesyetfvtaiesseedltleevieklleeeerrk 136
                       l   L +s+  + + + + + dl+l +vi +l++ee rr 
       CDO68752.1 152 VLIFNLDPSWASIASSLSALPGDLKLADVIGALVDEEARRA 192
                      *************************************9985 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   2.7   7.5e-11   2.7e-07       2      18 .]     223     239 ..     222     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 7.5e-11
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 kCy CG+pGHi++dCpk
  CDO68752.1 223 KCYVCGKPGHISHDCPK 239
                 8***************7 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   4.6e-06     0.016       3      24 ..     220     241 ..     218     248 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.6e-06
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknag 24 
                 +++ C  C+k+GH ++ C++ +
  CDO68752.1 220 QRVKCYVCGKPGHISHDCPKRQ 241
                 6778999************733 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.5e-05     0.053      26      80 ..      87     143 ..      62     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
  Retrotrans_gag  26 sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqlde...v 80 
                     +  W+ l++++ k+     ++ +l++e+ + r  ++  +reY++r + la++l+     
      CDO68752.1  87 PAAWAALRAVYEKNSRA--NRIALKREFYTTRHdPNAPIREYTNRVTALANRLKAigvT 143
                     678*********99999..55555666**************************988433 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   6.3e-05      0.23       1      26 [.     221     244 ..     221     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.3e-05
   zf-CCHC_6   1 rvKCknCGAFGHtarSkrCPmkcwng 26 
                 rvKC  CG  GH      CP ++ ++
  CDO68752.1 221 RVKCYVCGKPGHIS--HDCPKRQDQA 244
                 9***********86..99**988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2042.41
//
Query:       CDO68753.1  [L=241]
Description: hypothetical protein BN946_scf184989.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-10   40.6   0.9    3.1e-10   40.6   0.9    1.9  2  MPP6      M-phase phosphoprotein 6


Domain annotation for each model (and alignments):
>> MPP6  M-phase phosphoprotein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.9   1.8e-14   3.1e-10       2     127 ..       5     155 ..       4     160 .. 0.75
   2 ?   -1.9   0.2      0.25   4.4e+03      32      52 ..     214     234 ..     197     239 .. 0.47

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.8e-14
        MPP6   2 kLSsrvlnMKFMkrakkaeekkqeeeeesakklkdssewvldnpekkkkkskiks...........evsnvgfedl..............essvifGRr 75 
                  LS+ ++  +FM++a+ a+ + q e e+   k+kd+ ew++++++ +     ++            e s+v+f                 + + ++GRr
  CDO68753.1   5 TLSNGTMSLRFMQNAQRAKLQAQVELEQ--AKIKDDAEWSVSQEVRDAWGIGRSGqsasssndvvhEASYVPFIFQsdvgktssaepyegDIPKVRGRR 101
                 7***************************..***********999888776666547788899999955555554435556666688888889******* PP

        MPP6  76 sFggfnkeveekkeeeeeeeekekeedvsdeelakrykksesl....vgtiskkkk 127
                 +F++  +  e  +ee+ +ee+ e   d   e+    ++k+ ++    ++t+s++++
  CDO68753.1 102 TFNAKGE--EVVQEEKAHEEDGEPLPDAHNEKPRSKFEKRPTSisgfKNTLSTQRD 155
                 ***5444..33778888888888888888888888887774541122455555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.25
        MPP6  32 kklkdssewvldnpekkkkks 52 
                 +k + ++e++ d+p ++ +k 
  CDO68753.1 214 RKRERDQEIASDRPGSQGQKR 234
                 333333444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1908.33
//
Query:       CDO68754.1  [L=648]
Description: Glycoside Hydrolase Family 115 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-131  438.6   5.8   2.7e-131  438.0   5.8    1.3  1  Glyco_hydro_115  Glycosyl hydrolase family 115
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.79    9.6   0.1    2.2  2  ClpS             ATP-dependent Clp protease adaptor protein C


Domain annotation for each model (and alignments):
>> Glyco_hydro_115  Glycosyl hydrolase family 115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.0   5.8    3e-135  2.7e-131       2     339 .]     202     541 ..     201     541 .. 0.98

  Alignments for each domain:
  == domain 1  score: 438.0 bits;  conditional E-value: 3e-135
                      E--SSSEEEEE--SGCCCHHHHHHHCCS-.........SSSHHHHHHHHHHHHHTT--EEE---TS--HHHHSTCHHHHHHHHT-EE---TTST CS
  Glyco_hydro_115   2 gepsvkYRGiFiNDedpalsnWakekfge.........kinkefyekvfellLRlkaNylwpamwssafaeddpenqklAdeygivmgtsHaep 86 
                      g+p+v+YR+iF+NDe+pal+nWa ekf++          +n+ fy+k+fel+LRlk+N lwpa wssaf +ddp+nq+lAd ygivmgtsH+ep
       CDO68754.1 202 GSPTVQYRAIFLNDEQPALQNWAMEKFTNgtgaaltgsPFNHFFYTKLFELILRLKGNHLWPAQWSSAFGVDDPQNQALADWYGIVMGTSHEEP 295
                      79**************************9***************************************************************** PP

                      TT--HHHHHHSH--S-S-HHHHHHHHHHHHHHHHHHHTTS-B-EE-S---TTCCG-SSHHHHHHHHHHHHHHHHHHHHHHHHCTS.SGGGS-EE CS
  Glyco_hydro_115  87 llratveewkkkkkgewdystnkealkeywregverakklesvvtlGmRGegDealelaeeeakielleeviadQrkilkevvgk.dveevpqv 179
                      ++r+   ew+  + g+wdy tn++ ++++w +g erak++e+++t+GmRG+g           +i+lle+v++dQr+il +v+++ dv+++pqv
       CDO68754.1 296 MMRSIPVEWNLFGVGQWDYGTNQQFIYNFWVNGTERAKPYENMFTVGMRGNGQ----------NIQLLEKVVSDQRQILMDVYNTsDVTHIPQV 379
                      *****99*******************************************863..........578****************988799****** PP

                      E---TCHHHHHHTT----TTSEEEEEB-SSS-BS----CCHHHSTT-EEEEEESSB-SSS--B-SS----HHHHHHHHHHHHHTT--SEEEEE- CS
  Glyco_hydro_115 180 ltlYkEvqelyeaglkvpddvtllwaDdnygnvrrlpteeerkrkggaGvYYhfdyvgsprsykwlntvqlekiweqlkkayergadklwivNv 273
                      +tlYkEv+ +y++g++vpdd+ l+w+Ddn+gn+rrlp ++er+r+ggaGvYYh+dyvg+pr+ykw+++ q+ek++eq+++a++r+a ++w++Nv
       CDO68754.1 380 WTLYKEVEGYYDDGMRVPDDIALMWTDDNWGNIRRLPLPSERNRTGGAGVYYHIDYVGDPRDYKWITSSQIEKTYEQMSLAVARNAVRIWVLNV 473
                      ********************************************************************************************** PP

                      TTSTT-HHHHHHHHHHHH-HHHCHCGGHHHHHHHHHHHHC-..CCCHHHHHHHHHHHHHHHCCS-GGG CS
  Glyco_hydro_115 274 gdlkpleleisffldlawdaekvkaekveeflkawaereFg..eeeaeeiaeilekysklaarrkpEl 339
                      gd+kp+e++++ffl+lawda++++++++++f+ +wa+reF   +++a e+a+++++ ++ ++rrkpEl
       CDO68754.1 474 GDMKPYEMHTEFFLTLAWDADRWTPANINDFVVSWAQREFHvsQQDAVEVAALIHNVTRHNMRRKPEL 541
                      ****************************************76699999******************96 PP

>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.25   2.2e+03       5      14 ..     207     216 ..     204     219 .. 0.87
   2 ?    9.6   0.1   8.8e-05      0.79      18      48 ..     502     532 ..     498     539 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.25
                 -EEEEEES-S CS
        ClpS   5 qYkvvLlNDd 14 
                 qY+ + lND+
  CDO68754.1 207 QYRAIFLNDE 216
                 8********9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.8e-05
                 HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSE CS
        ClpS  18 mefVvevLqkvfgkskeeAteimlevhreGr 48 
                  +fVv+  q+ f+ s+++A+e++  +h+  r
  CDO68754.1 502 NDFVVSWAQREFHVSQQDAVEVAALIHNVTR 532
                 59*************************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4709.47
//
Query:       CDO68755.1  [L=195]
Description: hypothetical protein BN946_scf184989.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-62  208.5   0.0    5.8e-62  208.2   0.0    1.1  1  ASF1_hist_chap  ASF1 like histone chaperone
  ------ inclusion threshold ------
      0.036   14.7   0.0      0.051   14.2   0.0    1.3  1  DUF3123         Protein of unknown function (DUF3123)


Domain annotation for each model (and alignments):
>> ASF1_hist_chap  ASF1 like histone chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.2   0.0   6.5e-66   5.8e-62       7     154 .]       6     152 ..       4     152 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.2 bits;  conditional E-value: 6.5e-66
                     EEEEESS-SEETTS-EEEEEEEEESS--SS-EEEEEEEESSSSSGGGEEEEEEEEEES--SEEEEEEEEE----GGGSSSGGGSEEEEEEEEEEE CS
  ASF1_hist_chap   7 tnvkvlnnpakfsdpfkfeitfeclekLeedlewkliyvgsaeseeedqeLdsvlvGPikvGvnkFvfeadppdvskipkedvlgvtvilltasY 101
                     +nv++lnnpa+f dp++f++tfec+++L edlew+liyv+s+ +ee dqeLd++lvGP++vGvn+F+fe ++p++skip+edvlgv++++lt sY
      CDO68755.1   6 QNVEFLNNPARFLDPYHFRVTFECIAPLPEDLEWRLIYVASPGNEELDQELDDCLVGPVPVGVNAFEFEGSAPNPSKIPPEDVLGVAALILTGSY 100
                     69********************************************************************************************* PP

                     TTEEEEEEEEEEEEEETT--CTTHHHS---GGGEEEEE-TTS-EEEE----TT CS
  ASF1_hist_chap 102 keqeFvrvGYyvnneyedeelkenppekpkieklvRniladkprvtrfkikwd 154
                     k+qeFvrvGYy n+ey+++e+kenppe +++++lvR i  +kprvtrf+ikwd
      CDO68755.1 101 KDQEFVRVGYYQNTEYDNDEMKENPPEPIRFDRLVRDIN-QKPRVTRFQIKWD 152
                     *************************************98.9***********8 PP

>> DUF3123  Protein of unknown function (DUF3123)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.7e-06     0.051      44     106 ..     123     192 ..      88     194 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-06
     DUF3123  44 edPfrtvrVareevklikvsp.........kaappsaspstattasasattaavaskkkaapaprptvaGKs 106
                 e+P +++r  r  v+ i++ p          ++pp +++++a+ a++sa++ ++ + +  + +p pt+ GK 
  CDO68755.1 123 ENPPEPIRFDRL-VRDINQKPrvtrfqikwDISPPQPQSAVAAGAANSAAVPSADDLDD-EESPEPTTNGKT 192
                 344455554442.3333333334557777788999999999999999887775554433.369*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1398.39
//
Query:       CDO68756.1  [L=189]
Description: hypothetical protein BN946_scf184989.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.017   15.1   0.3      0.042   13.9   0.1    1.8  2  DUF1664        Protein of unknown function (DUF1664)
       0.11   12.8  19.4      0.077   13.2   9.3    2.1  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
       0.51   10.1  11.4       0.71    9.6   2.0    2.2  2  DUF4201        Domain of unknown function (DUF4201)
       0.68   10.4  12.1        2.2    8.7   0.1    3.1  2  DUF4140        N-terminal domain of unknown function (DUF4140
       0.99    8.8  14.2       0.28   10.6   8.7    1.9  2  Golgin_A5      Golgin subfamily A member 5
          1    9.7   9.1       0.24   11.7   1.2    3.0  3  FinO_N         Fertility inhibition protein N terminal
          1    8.2  15.0       0.51    9.2   2.7    2.1  2  Spc7           Spc7 kinetochore protein
        1.2    8.5  14.1       0.77    9.1   3.0    2.4  2  GAS            Growth-arrest specific micro-tubule binding
        2.3    8.4  15.3       0.19   11.8   1.1    2.7  2  Cep57_CLD_2    Centrosome localisation domain of PPC89
        2.3    8.3  10.8       0.19   11.8   2.2    2.2  2  ADIP           Afadin- and alpha -actinin-Binding
        2.4    8.6   7.8        1.8    8.9   0.8    2.5  2  YlqD           YlqD protein
        2.4    7.3   4.2        1.3    8.1   0.3    1.9  2  TMPIT          TMPIT-like protein
        2.9    6.4   5.5        2.3    6.7   0.2    1.9  2  FapA           Flagellar Assembly Protein A
        2.9    6.6  11.9        6.2    5.6  11.6    1.4  1  DUF812         Protein of unknown function (DUF812)
        3.5    6.1   7.4         15    4.1   7.4    1.8  1  AAA_13         AAA domain
        4.6    6.9   8.8        2.1    8.0   3.6    2.0  1  SHE3           SWI5-dependent HO expression protein 3
        5.9    7.4  21.1       0.71   10.4   1.2    3.2  2  ZapB           Cell division protein ZapB
        8.2    5.7  12.6         20    4.4  12.6    1.7  1  DUF4407        Domain of unknown function (DUF4407)
        8.5    5.4  11.5         27    3.7  11.5    1.6  1  Atg14          Vacuolar sorting 38 and autophagy-related subu


Domain annotation for each model (and alignments):
>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1     1e+03      55     103 ..      63     112 ..      48     118 .. 0.71
   2 ?   13.9   0.1   4.5e-05     0.042      62     115 ..     113     166 ..      84     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskei.keevtevredlseigedv 103
                 +++++  ++L +r +  + +  +  ++++++ +e v +++ed ++ + + 
  CDO68756.1  63 SEVSKENNELLERAELAEGQARDGLAMIRATyEERVRRAEEDAARWKAQY 112
                 56777788888888877777766666655551566888888887777665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.5e-05
     DUF1664  62 rhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 + L +r +r+d+ +   +++  e+++ev+++re+l++++ed + ++ + egl +
  CDO68756.1 113 QLLLERDARMDDDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGVLEGLTK 166
                 557788899***************************************999965 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   9.3   8.2e-05     0.077      49     142 ..      24     121 ..      21     128 .. 0.78
   2 ?    5.3   2.5     0.022        21      54      91 ..     135     172 ..     122     184 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
  Jnk-SapK_ap_N  49 eaeleelreeleqLeteyerekelrkraeeeleeiedq...weeerkelqekveqle.eenrelelkaknaadqlsrleekeaelkkeysklhere 140
                    e++l +lr+e+e+L+ ++ +  ++r  + + + ++  +   + +e++el e+ e  e + ++ l +    +++++ r ee  a +k +y+ l er+
     CDO68756.1  24 EVKLAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHaseVSKENNELLERAELAEgQARDGLAMIRATYEERVRRAEEDAARWKAQYQLLLERD 119
                    6899**********************999776666655000555555566666555633444577888899*******************999988 PP

  Jnk-SapK_ap_N 141 te 142
                      
     CDO68756.1 120 AR 121
                    65 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.022
  Jnk-SapK_ap_N  54 elreeleqLeteyerekelrkraeeeleeiedqweeer 91 
                    elr+e+ +L++e++   e+ kr e  le + ++  ee+
     CDO68756.1 135 ELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQVEET 172
                    44444444444444444444444433333333333333 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.2     0.012        11      85     137 ..      26      78 ..      22      83 .. 0.90
   2 ?    9.6   2.0   0.00075      0.71      82     144 ..     108     170 ..      90     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
     DUF4201  85 klhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggl 137
                 kl  l++e++el+ +  + e++++  r+   k+  + + + k+n++l ++ +l
  CDO68756.1  26 KLAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNELLERAEL 78 
                 8889999***************************************9888776 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00075
     DUF4201  82 lkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLl 144
                 +k   + l +  +++ ++++++ + + +lr+e+ ++++e d l++++++++  ++ l ++++ 
  CDO68756.1 108 WKAQYQLLLERDARMDDDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQVE 170
                 666667777777899999999999999999999999999999999999998877777777765 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0024       2.2      56      90 ..      17      50 ..       4      54 .. 0.74
   2 ?    2.3   7.5      0.25   2.4e+02      65      91 ..     123     164 ..      55     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0024
     DUF4140 56 rvpnreaeeeelkalraeleeledelaaledelaa 90
                ++p +e e + l++lrae eel++++a++e++++ 
  CDO68756.1 17 STPPPEWEVK-LAQLRAENEELQRRKADAEKDRDL 50
                4455555664.9***************99998875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.25
     DUF4140  65 e...............elkalraeleeledelaaledelaaa 91 
                 +               e+++lr+el++le++ ++ e  l+ +
  CDO68756.1 123 DddirrraalepelraEVARLREELDSLEEDYKRMEGVLEGL 164
                 144444444445555457888888888887777777766665 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.8     0.018        17      60     149 ..      34     123 ..      21     133 .. 0.64
   2 ?   10.6   8.7    0.0003      0.28      26     151 ..      50     175 ..      46     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.018
   Golgin_A5  60 reelqklnqqieqlrtelqdleaqqqaeaeslreqlqe.leeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeie 149
                 +eelq+ +   e+ r  ++dl  ++++ a+++ ++++e le +  +e +a+  + +  + ++e +r++ee+  r ka++q  + +r++ ++
  CDO68756.1  34 NEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNElLERAELAEGQARDGLAMIRATYEERVRRAEEDAARWKAQYQLLL-ERDARMD 123
                 46666677777777777777777776666665544444055555566777777777777778888888888888888888766.5555554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0003
   Golgin_A5  26 liasLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelr 124
                 l  +L  +++++++e s++++  l+ ++  + ++r+ l+  + + e+     ++  a+ +a+ + l e+ +++++ ++   + + e++ae++rl+eel+
  CDO68756.1  50 LFRDLYGKASSHASEVSKENNELLERAELAEGQARDGLAMIRATYEERVRRAEEDAARWKAQYQLLLERDARMDDDIRRRAALEPELRAEVARLREELD 148
                 556777778888999999999999999999999999999999998876666678888999999************************************ PP

   Golgin_A5 125 yleeelvrskatlqsrikdrekeiekl 151
                 +lee+ +r    l++  k++ +e +++
  CDO68756.1 149 SLEEDYKRMEGVLEGLTKEQVEETDEI 175
                 *********999999999887776654 PP

>> FinO_N  Fertility inhibition protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.2   0.00026      0.24      20      61 ..       7      45 ..       2      46 .. 0.80
   2 ?   -2.4   0.1       6.4   6.1e+03      49      59 ..      74      84 ..      65      85 .. 0.70
   3 ?    2.0   0.1      0.29   2.7e+02      35      59 ..     107     131 ..     104     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
      FinO_N 20 ParsRkkiinvttPPkWkvkkekLaekakreAelAakkAaar 61
                Pa + + +   t PP+W vk  +L  +a    el  +kA a 
  CDO68756.1  7 PAAATQAVKGSTPPPEWEVKLAQL--RAEN-EELQRRKADAE 45
                88888888888999*********9..6655.58999999875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.4
      FinO_N 49 reAelAakkAa 59
                  AelA+ +A+
  CDO68756.1 74 ERAELAEGQAR 84
                56888887775 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.29
      FinO_N  35 kWkvkkekLaekakreAelAakkAa 59 
                 +Wk++ + L e+ +r  +   ++Aa
  CDO68756.1 107 RWKAQYQLLLERDARMDDDIRRRAA 131
                 7********9*99998777777665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.3     0.025        24     143     216 ..      29     102 ..      22     126 .. 0.76
   2 ?    9.2   2.7   0.00054      0.51     152     205 ..     116     173 ..     107     186 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.025
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeie 216
                 +l+ + e+l++ k+  ek+++++ +l+ + +++ +e+++e ++l e+ae  e   ++ L+ +r + +e     e
  CDO68756.1  29 QLRAENEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNELLERAELAEGQARDGLAMIRATYEERVRRAE 102
                 67778889999999999999999999999999999999999999999988888889999988876655444433 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00054
        Spc7 152 eedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles....idkeeLeelr 205
                  e +++++++     +l pel++e a+l+eel++l+e ++ +e     ++ke++ee+ 
  CDO68756.1 116 LERDARMDDDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGvlegLTKEQVEETD 173
                 5556666667777777788888888888888888888777776633334444444443 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.0   0.00081      0.77      99     149 ..      25      75 ..      21      84 .. 0.66
   2 ?    4.6   3.5      0.02        19      51     130 ..     128     169 ..      81     182 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00081
         GAS  99 kelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLek 149
                  +l +l+ e+e l+ r + +ek+rd +++ + +a  ++++ ++ +n lLe+
  CDO68756.1  25 VKLAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNELLER 75 
                 556666666666666666666666666666666666666666666666665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.02
         GAS  51 eisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfe 130
                   ++                                         el  e+ +l++e ++le+ ++++e   + l+k++ 
  CDO68756.1 128 RRAALEP--------------------------------------ELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQV 169
                 2222222......................................23333334444444444444444444444444443 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   7.1      0.61   5.8e+02      11      57 ..      26      72 ..      24      84 .. 0.72
   2 ?   11.8   1.1    0.0002      0.19       1      32 [.     136     167 ..     136     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.61
  Cep57_CLD_2 11 rLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaeveal 57
                 +L +l+ ++++ +  +++  k+Rd +    g A + + e + e++ l
   CDO68756.1 26 KLAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNEL 72
                 56677777777777777777788888888888888888888887766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
  Cep57_CLD_2   1 LeaevktLqnrLdsltrklqvheeelkrLnkE 32 
                  L aev +L+++Ldsl++ +   e+ l+ L kE
   CDO68756.1 136 LRAEVARLREELDSLEEDYKRMEGVLEGLTKE 167
                  679********************999999997 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.6      0.32     3e+02      84     102 ..      28      46 ..      22      80 .. 0.50
   2 ?   11.8   2.2    0.0002      0.19      54     125 ..      90     161 ..      82     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.32
        ADIP  84 eqlerelalvqakerqlek 102
                 +ql+ e++ +q++++++ek
  CDO68756.1  28 AQLRAENEELQRRKADAEK 46 
                 3333333333333333333 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
        ADIP  54 qreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknal 125
                  r +++e++r+ e + +r +++++ l ++ ++ +  +    a e +l++++++l + l ++ e+ +r++  l
  CDO68756.1  90 IRATYEERVRRAEEDAARWKAQYQLLLERDARMDDDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGVL 161
                 57899**************************************************************98665 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.1      0.18   1.7e+02      34      82 ..      25      82 ..      21      85 .. 0.75
   2 ?    8.9   0.8    0.0019       1.8      22      91 ..      91     162 ..      84     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.18
        YlqD 34 kelqqLefqakrlikeikkqsaq.........qieeiqeqvekekserlekkkqllqq 82
                 +l+qL+ + ++l + ++  +++         ++++  ++v+ke +e+le+ + ++ q
  CDO68756.1 25 VKLAQLRAENEELQRRKADAEKDrdlfrdlygKASSHASEVSKENNELLERAELAEGQ 82
                5677777777777666666555577888999888899999999999999998877666 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0019
        YlqD  22 qqqlqaqieqldkelqqLefqakrlikeikkqsaq..qieeiqeqvekekserlekkkqllqqleqvqkLel 91 
                  +++++++++++++ ++++ q + l++  ++ + +  + ++++ ++++e ++++e+ ++l++++++++ +  
  CDO68756.1  91 RATYEERVRRAEEDAARWKAQYQLLLERDARMDDDirRRAALEPELRAEVARLREELDSLEEDYKRMEGVLE 162
                 567777777778888888888777777776655545577777777777777777777777777777665433 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.0     0.098        92       4      81 ..      27     111 ..      24     117 .. 0.71
   2 ?    8.1   0.3    0.0014       1.3       2      83 ..     103     184 ..     102     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.098
       TMPIT   4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.......eeeeeeveelkeelkerkkv 81 
                 +++l+ e +el+ ++   +++ +    l  k s+++++ +k+ +el ++ +  + +++       + +ee+v++ +e+ +++k++
  CDO68756.1  27 LAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNELLERAELAEGQARdglamirATYEERVRRAEEDAARWKAQ 111
                 5678888888888888888888888888888888888888888888877777766655455555566777777777777666655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlk 83 
                 e++++ + +++ l e+  ++  ++++ ++l+ +++ e+++ +++l +l+++ k+++  ++  ++e+vee +e  +++++ ++
  CDO68756.1 103 EDAARWKAQYQLLLERDARMDDDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQVEETDEIAETAQAPIS 184
                 667788899999999999999***********************************99998888888888877777766655 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.0       0.1        96     333     402 ..      21      95 ..       7     115 .. 0.52
   2 ?    6.7   0.2    0.0024       2.3     327     370 ..     129     171 ..     120     185 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
        FapA 333 pelkeklkeleeeleeleeeleklkkk.......ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk 402
                 pe   kl++l+ e eel+++  + +k+       + k ++    +++++e  e l++++ +  + ++ l+ +++ ++
  CDO68756.1  21 PEWEVKLAQLRAENEELQRRKADAEKDrdlfrdlYGKASS--HASEVSKENNELLERAELAEGQARDGLAMIRATYE 95 
                 5556666666666666666666666664443332222222..22334444445555555444555555555554444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0024
        FapA 327 evgldepelkeklkeleeeleeleeeleklkkkikklpklkaek 370
                 +++l+ pel++++++l+eel +lee  ++ +  ++ l k+++e+
  CDO68756.1 129 RAALE-PELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQVEE 171
                 45566.77777777777777777777777777777777744332 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.6    0.0065       6.2     330     478 ..      25     167 ..      20     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0065
      DUF812 330 eeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplie 428
                  +l++l+ + eel+++ +  e++ + +++   ++++++ e  +en+el +  +l++       +a   ++   a  e+  +r  e a++W+++ + l+e
  CDO68756.1  25 VKLAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHASEVSKENNELLERAELAE------GQARDGLAMIRATYEERVRRAEEDAARWKAQYQLLLE 117
                 56778888888888888888888888888888888888888888888887777766......4777888888888888888888888888888888888 PP

      DUF812 429 eyrelkesksekekeaerkleeikklrekmkevaeelrqkeellkqLvae 478
                    +  + ++++++   +  +e+++lre++  ++e+ ++ e  l+ L++e
  CDO68756.1 118 RDARMDDDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGVLEGLTKE 167
                 88888888888888888888888888888888888888888887777654 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.4     0.016        15     390     442 ..     127     178 ..      21     184 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
      AAA_13 390 eekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkl 442
                 +++++++ +l++ +v++l++eld ++++yk++e  +e l+ke+ ee++e+++ 
  CDO68756.1 127 RRRAALEPELRA-EVARLREELDSLEEDYKRMEGVLEGLTKEQVEETDEIAET 178
                 333344444444.5577788888888888888888888888888888777765 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.6    0.0023       2.1      38     121 ..      67     151 ..      59     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH CS
        SHE3  38 kkeskflenlaslk.hENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalv 121
                 k ++++le    +  +  d L  +    e r++  e++ +  k +++ l ++   +++++++  a e el++e+ rl+ + d+l 
  CDO68756.1  67 KENNELLERAELAEgQARDGLAMIRATYEERVRRAEEDAARWKAQYQLLLERDARMDDDIRRRAALEPELRAEVARLREELDSLE 151
                 555566665555541234667777777899**************************************************99995 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3  12.8       6.8   6.4e+03      20      48 ..      27      69 ..      25     118 .. 0.64
   2 ?   10.4   1.2   0.00075      0.71      22      58 ..     135     171 ..     133     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.8
        ZapB 20 itlLqmeieeLkeeneelkeenrele..............een 48
                +++L+ e+eeL+++++  ++  +  +              +en
  CDO68756.1 27 LAQLRAENEELQRRKADAEKDRDLFRdlygkasshasevsKEN 69
                4678888888888887777666666677777775554444222 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00075
        ZapB  22 lLqmeieeLkeeneelkeenreleeeneqlkeereaw 58 
                 +L+ e+++L+ee  +l+e  +++e  +e l +e+ + 
  CDO68756.1 135 ELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQVEE 171
                 69**********************7777777666544 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  12.6     0.021        20     134     256 ..      26     167 ..       7     183 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.021
     DUF4407 134 elaeleaqiaalqaeidaaearldalraeaqkeldgtk...............gtgttgvaGkgpaakekkaqldaaqaelaelkakld....atarla 213
                 +la+l+a++++lq+  + ae+++d  r+ + k  + ++                +g +++ G   +  + ++   +a+++ a +ka+ +    ++ar++
  CDO68756.1  26 KLAQLRAENEELQRRKADAEKDRDLFRDLYGKASSHASevskennelleraelAEG-QARDGLAMIRATYEERVRRAEEDAARWKAQYQllleRDARMD 123
                 56666666666666666666665555554444444444444555555555444222.335555555556777777788888888888778888788888 PP

     DUF4407 214 alraelaeleaerakeraasqaaaaaddGllarlea.ldrltke 256
                 ++ +++a le e+++e+a+ +++ ++     +r+e  l+ ltke
  CDO68756.1 124 DDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGvLEGLTKE 167
                 88888888888888888888888877776666666555555555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  11.5     0.029        27      29     135 ..      25     171 ..      22     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.029
       Atg14  29 erlaklksekeslkkkiekalegke........................................eaeqledkiknkkakleelksliadlrerlqelk 87 
                 ++la+l++e+e+l+++  +a++ ++                                           + e+++++  +++ + k++ ++l er +++ 
  CDO68756.1  25 VKLAQLRAENEELQRRKADAEKDRDlfrdlygkasshasevskennelleraelaegqardglamIRATYEERVRRAEEDAARWKAQYQLLLERDARMD 123
                 789999999999999999999999999999999999999999987777777777777777777775556666666666677777777777777777777 PP

       Atg14  88 dklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiak 135
                 d+++++ +   e ++++a+l+++l    +d + ++  le   k+q+++
  CDO68756.1 124 DDIRRRAALEPELRAEVARLREELDSLEEDYKRMEGVLEGLTKEQVEE 171
                 777777777777777777777777644444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1393  (0.0776954); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 1149.89
//
Query:       CDO68757.1  [L=525]
Description: hypothetical protein BN946_scf184989.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3697.15
//
Query:       CDO68758.1  [L=325]
Description: hypothetical protein BN946_scf184989.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-11   42.7   0.0    9.1e-11   41.9   0.0    1.5  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   5.1e-15   9.1e-11       4      74 ..      96     172 ..      93     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 5.1e-15
                 EEEEEEEEETTSE.EEEEEES.....SSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEE CS
       NUDIX   4 ravgvvllnekge.vLlvrrs.....kkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapy 74 
                  ++g+v++++ +e ++l+ ++     ++p ++W lP+G+ + gE++e+AA+RE+ EE G+++  l ll ++   +p+
  CDO68758.1  96 LGAGMVIIQPSTEkIVLLSEThsepqRQPYTSWFLPKGRKDVGESLEQAALREAYEESGYRVSFLPLLMDTNAPFPP 172
                 57899988888778555555547886666666****************************99888888744443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2543.90
//
Query:       CDO68759.1  [L=272]
Description: hypothetical protein BN946_scf184989.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1919.26
//
Query:       CDO68760.1  [L=343]
Description: hypothetical protein BN946_scf184989.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-12   46.5   0.6    0.00028   21.1   0.1    3.3  3  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.6e-05   25.6   5.9     0.0021   18.8   0.2    3.5  4  WD40          WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.033   14.1   0.0        2.5    7.9   0.0    2.3  2  eIF2A         Eukaryotic translation initiation factor eIF2A
       0.25   11.2   2.1        5.3    6.9   0.0    2.5  3  TFIIIC_delta  Transcription factor IIIC subunit delta N-term


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.1e-05      0.05      30      90 ..     200     259 ..     175     261 .. 0.78
   2 !   11.9   0.0   4.7e-05      0.21      43      81 ..     255     291 ..     246     293 .. 0.85
   3 !   21.1   0.1   6.2e-08   0.00028      37      76 ..     289     328 ..     285     338 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
  ANAPC4_WD40  30 wtleedkedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++l  +++ ++   ++W + d ++La ++ +g ++l d  +++ v+ ++ ++   v  ++W 
   CDO68760.1 200 FKL--PHNRGKLVTIEWAHkDPNFLAAGTTNGDIQLWDTDTTTQVRRWQEEAFVDVGGMSWY 259
                  444..566777778999651669**********************99998887777777775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.7e-05
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++W   +k+Lav+  dg + l+da s +++  ++ +++
   CDO68760.1 255 GMSW--YDKVLAVGLGDGVITLYDARSPDLIGRIESHRD 291
                  5566..479*********************999999887 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 6.2e-08
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +  +v++L+W++dg+ La + ++g v++ da   k ++s 
   CDO68760.1 289 HRDKVHGLQWRQDGNYLASSDQQGVVQIWDARASKSLSSE 328
                  6789***************************999988765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.6   1.6e+04      17      31 ..     171     185 ..     151     185 .. 0.73
   2 !    7.8   0.0    0.0015       6.7      19      38 .]     216     235 ..     198     235 .. 0.89
   3 ?   -0.5   0.1      0.61   2.7e+03      23      38 .]     261     276 ..     250     276 .. 0.76
   4 !   18.8   0.2   4.8e-07    0.0021       7      38 .]     286     318 ..     281     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
                 EEETTSSEEEEEETT CS
        WD40  17 afspdgawlasGsdD 31 
                 ++s  ++  +++++D
  CDO68760.1 171 SWSARNSIAVACGRD 185
                 466666666677766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 ++d ++la+G+ +g + +Wd
  CDO68760.1 216 HKDPNFLAAGTTNGDIQLWD 235
                 678999****99*******9 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.61
                 SEEEEE.ETTSEEEEEE CS
        WD40  23 awlasG.sdDgtvriWd 38 
                 + la G + Dg + ++d
  CDO68760.1 261 KVLAVGlG-DGVITLYD 276
                 34888978.***99987 PP

  == domain 4  score: 18.8 bits;  conditional E-value: 4.8e-07
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ H + v++l++ +dg++las++  g v iWd
  CDO68760.1 286 IESHrDKVHGLQWRQDGNYLASSDQQGVVQIWD 318
                 5689777**************9999*******9 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00056       2.5     101     145 ..     207     249 ..     166     258 .. 0.72
   2 ?    3.6   0.0     0.012        52      83     140 ..     270     327 ..     260     338 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00056
                 ES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT CS
       eIF2A 101 qkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan 145
                  k  ti +  k+  +l aG   ++G++++wd+++++++ + +++ 
  CDO68760.1 207 GKLVTIEWAHKDPNFLAAGT--TNGDIQLWDTDTTTQVRRWQEEA 249
                 35568999999999999975..679*********99999887765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.012
                 CEEEEEECS.CEEEEEEEE..ES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE CS
       eIF2A  83 akvslfdlk.vkvisklee..qkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak 140
                   ++l+d +  ++i ++e+  +k   + + + g++++ +   + +G ++iwd    k++++
  CDO68760.1 270 GVITLYDARsPDLIGRIEShrDKVHGLQWRQDGNYLASS---DQQGVVQIWDARASKSLSS 327
                 456777776434444444300345567788888877765...5567788888877766655 PP

>> TFIIIC_delta  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0012       5.3       7      30 ..     169     192 ..     165     216 .. 0.85
   2 ?    3.3   0.0     0.015        69     116     141 ..     222     247 ..     215     254 .. 0.88
   3 ?   -3.5   0.1       1.9   8.6e+03       6      23 ..     294     311 ..     292     332 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
  TFIIIC_delta   7 alaWSeDgqlavatgesiyiLepk 30 
                   +++WS  + +ava g+++y  +++
    CDO68760.1 169 PISWSARNSIAVACGRDVYYQNLD 192
                   89****************966665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.015
  TFIIIC_delta 116 LavLtttgeLsiyeasgnkekssWtr 141
                   La+ tt+g++++++ + +++ ++W +
    CDO68760.1 222 LAAGTTNGDIQLWDTDTTTQVRRWQE 247
                   8999**********99999*****75 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.9
  TFIIIC_delta   6 dalaWSeDgqlavatges 23 
                   + l+W +Dg+  ++++++
    CDO68760.1 294 HGLQWRQDGNYLASSDQQ 311
                   677777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2565.35
//
Query:       CDO68761.1  [L=431]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0013   18.2   0.0     0.0023   17.4   0.0    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
          4    6.9   5.9        1.7    8.1   0.1    2.6  2  DUF3678         Protein of unknown function (DUF3678)


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-07    0.0023      20      93 ..      71     155 ..      53     171 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-07
                     SEEEEEEEE.........EEEEEEEECCEESSEEEEE..EEE---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEBT CS
  Glyco_hydro_16  20 etltltldk.........esgsrikskksflyGkvea..rikaaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvygk 93 
                      ++ +++d+         +++ +i s+++f  G v     + ++ +  v+++f+++ ++++  +EiDi E + n+ +  q++++++
      CDO68761.1  71 GNAIIKVDNtsfvpfnfkRNSVKIISHDYFPIGSVFLfdALHLPFGCSVWPSFWTMGQNWPHGGEIDImEGV-NRATSDQMTLHAN 155
                     455555555555555554557778888888777654422455888888********999*********9999.5566667777765 PP

>> DUF3678  Protein of unknown function (DUF3678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.2      0.12     1e+03      10      19 ..     247     255 ..     243     257 .. 0.56
   2 ?    8.1   0.1   0.00019       1.7      16      33 ..     307     324 ..     294     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
     DUF3678  10 aasa.stsSfs 19 
                 a  a ++sS++
  CDO68761.1 247 A--AwPSSSCN 255
                 3..24666665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00019
     DUF3678  16 sSfslaHlqldhpFkrya 33 
                 s ++++H q + ++k y+
  CDO68761.1 307 SACCMTHEQAFPASKQYI 324
                 67*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2944.30
//
Query:       CDO68762.1  [L=1549]
Description: hypothetical protein BN946_scf184989.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-55  186.1   0.0    1.2e-54  185.5   0.0    1.2  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    5.9e-12   45.8   0.0    1.5e-11   44.5   0.0    1.7  1  rve              Integrase core domain
    6.2e-09   35.6   0.0    1.3e-08   34.5   0.0    1.6  1  gag_pre-integrs  GAG-pre-integrase domain
    0.00016   21.3   0.0    0.00026   20.7   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    0.00031   20.5   0.1     0.0013   18.5   0.0    2.1  2  rve_3            Integrase core domain
  ------ inclusion threshold ------
      0.045   13.8   0.6       0.11   12.6   0.6    1.7  1  zf-CCHC          Zinc knuckle


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.0   4.1e-58   1.2e-54       8     241 ..    1069    1307 ..    1060    1308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 4.1e-58
       RVT_2    8 lPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldee..vyvkqPp 101 
                   P +r+ +  + vf++k+d+  + v++kar v +G+  + g+dy+ + +P +r++s rLll laa  ++ + q+dv++afL + l ++   y+ qP 
  CDO68762.1 1069 VPYGRRIMHGKPVFRLKRDEHgNPVRFKARWVCKGYEAVWGQDYNRTTSPTMRMESFRLLLHLAASLDWELLQVDVKTAFLYGLLPDDevCYMEQPQ 1165
                  689999999*********999899***********************************************************99544459****** PP

       RVT_2  102 GfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk 198 
                  Gfe  ++e+ v++L+k+lyG+ q +++Wn+++++ L   gf+r+++e  ly r+  eg +i +++vdd+l  +s++     +k +l + + ++dlg+
  CDO68762.1 1166 GFEEPGHEDWVWELHKGLYGMPQGGRTWNRTMHSHLVSAGFTRIDSEYCLYYRTSPEGTVITGVHVDDFLAIASSPAAGALFKADLRRAWTISDLGE 1262
                  ************************************************************************************************* PP

       RVT_2  199 vskfLGieiaq..eaggiklsladyiakvvkkfeltdaktvatPl 241 
                  +++ +Gi i +   + +i++s+++ i +++ +f+l+da++vatP+
  CDO68762.1 1263 AKFCIGIAIERdrATRTIRISQTALIDRIITQFGLADAHPVATPM 1307
                  *********98546789***************************9 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0     5e-15   1.5e-11      23     115 ..     663     753 ..     641     756 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 5e-15
         rve  23 kayllvvvddfsrlilaealsdemdastvlalleravarfggve..pervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtl 115
                 ++  l ++ddfs ++++++++++   ++++ +l+ ++  +  ++  ++++++D+g + t ++++++++ lg++++ t+p+ +  nGk+Er+hrt+
  CDO68762.1 663 NVCPLDIIDDFSSYAWTFPVPSK---AHCAPTLRDFIIARRAEGcpVRKIVMDRGECLT-EEIKAVCRILGVTWEITAPHTSAHNGKAERIHRTF 753
                 6777889****************...55555566555555555567*********9999.9********************************96 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   4.5e-12   1.3e-08       1      67 []     557     626 ..     557     626 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.5e-12
  gag_pre-integrs   1 gLYlldlssnanssvslsknkssinlWHrRLGHpsfsrlkkLfkkgllpglki...sksevCeaCqlgKq 67 
                      gLY l++   + ss+ +s++  +++ WHrRLGH ++++  +++k    +g +    s  ++C+aC+ gKq
       CDO68762.1 557 GLYALSGPAPEVSSALVSTSMPTLETWHRRLGHANYRATYTVAKAVRASGTPVnlsSPPPKCDACIRGKQ 626
                      799999966666677788899****************99999985444444431114477*********8 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   8.8e-08   0.00026       1     100 [.     135     234 ..     135     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 8.8e-08
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w  +d+ ++a+I+l  s+++ e++   +ta e++  L++ + + +++++++l+++l +l++++g+ +a   ++   ++++  a+g    d +  
       CDO68762.1 135 WVINDRHVQAFIRLQCSENEREHLPAVQTASELYAFLAARHLNRGTHTQVFLLRDLLALRFDQGQALAPQAQNAIRICRQVIAMGPLTADALGK 228
                      7889*****************************************************************************9999877777777 PP

  Retrotran_gag_2  95 vllLas 100
                      v lL+ 
       CDO68762.1 229 VVLLNM 234
                      777765 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.3e-07    0.0013       2      35 ..     729     762 ..     728     770 .. 0.85
   2 ?   -2.5   0.1       1.5   4.5e+03      16      53 ..     988    1025 ..     980    1026 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.3e-07
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellneel 35 
                 g++++++ap++  +Ng++E++++t+  +   ++l
  CDO68762.1 729 GVTWEITAPHTSAHNGKAERIHRTFLGKSRAMRL 762
                 99**********************9877766665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
       rve_3   16 NglvEsfngtlrdellneelfrslaearekleawredY 53  
                   +  E+  +t  + + +++++++l++a +++ +  +dY
  CDO68762.1  988 RARSERDARTAARSATDSTAQSKLDHALAATLQLDHDY 1025
                  56778888888888899999999999998888777776 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   3.7e-05      0.11       3      17 ..     305     319 ..     303     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
                 TSSSSSSSSTTTTST CS
     zf-CCHC   3 CynCGepGHiardCp 17 
                 C nC + GH a dC 
  CDO68762.1 305 CSNCKRKGHAATDCF 319
                 **************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.50
# Mc/sec: 9305.16
//
Query:       CDO68763.1  [L=347]
Description: hypothetical protein BN946_scf184989.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-29  102.8   0.6      2e-29  102.2   0.6    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.1e-21   78.2   0.1    1.9e-21   77.5   0.1    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    1.8e-12   47.1   0.1    1.2e-11   44.4   0.1    2.2  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.011   15.3   0.1       0.02   14.5   0.1    1.4  1  DAGK_cat      Diacylglycerol kinase catalytic domain
      0.028   14.3   0.0      0.078   12.9   0.0    1.7  1  ADH_N_2       N-terminal domain of oxidoreductase
      0.045   13.0   0.1      0.069   12.3   0.1    1.2  1  NAD_kinase    ATP-NAD kinase
      0.056   12.9   0.1      0.085   12.3   0.1    1.3  1  DUF2117       Uncharacterized protein conserved in archaea (D


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.6   7.9e-33     2e-29       1     129 [.     178     307 ..     178     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 7.9e-33
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.. 96 
                 gv ++++qlA a+Ga+via++ss+ekl++akklGa+++inyk++ +++e++ ++t+g+gvd ++e+ G + t+  +++++++gG++ v+G++ g+ +  
  CDO68763.1 178 GVSIFGLQLAVASGATVIATSSSDEKLAIAKKLGATYTINYKKTpNWDEEVLKITKGRGVDHIVEVGG-PGTIMKSVNCVRYGGTISVIGFVAGQADvs 275
                 899*****************************************************************.**********************66656534 PP

                 .EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 .fdlrnlllkeksilGsllgslreefkealdlla 129
                  ++++ +l+k + ++G+l gs r +f+++++l++
  CDO68763.1 276 eLPVK-VLAKAVLMRGILIGS-RAQFEDMNRLIE 307
                 44444.88*************.******999975 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   7.3e-25   1.9e-21       1     133 []     210     342 ..     210     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 7.3e-25
                   TT-SEEEETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   lGA+  i+y+ t+++     + t+g+gvD++++  gg+ ++ +s+++++ gG++ +ig    +a++++++  +  ++  +   + +  s +a+ +e+
    CDO68763.1 210 LGATYTINYKkTPNWDeevlKITKGRGVDHIVEV-GGPGTIMKSVNCVRYGGTISVIGFVAGQADVSELPV-KVLAKAVLMRGI-LIGS-RAQ-FED 301
                   8*********9999*9*****************6.7777789******88899988885333333333333.222222222222.3445.999.*** PP

                   HHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  93 laalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   + +lie+ klrpv+d+vf++ee+++A++y+ s +++GK+V+
    CDO68763.1 302 MNRLIEAVKLRPVIDKVFSFEELRKAYEYMDSQQHVGKVVV 342
                   ****************************************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   4.8e-15   1.2e-11       2     108 ..      35     135 ..      34     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 4.8e-15
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 +evl+kv+a+++   Dl ++kg+  l +k + ++G +++Ge++++g+evk++kvG+rV+ ++++     +  +        +a+ lg+ +dG ++ey +
  CDO68763.1  35 TEVLVKVHAVSLQYRDLIVAKGQYPLGQKENPVPGSDMAGEIVALGDEVKGWKVGERVCSNFAVDHIYGDVTE------EIKATGLGAPIDGVLTEYKI 127
                 79*********************99999999*****************************9998765554443......35567888889999999999 PP

                 ECGGGEEE CS
       ADH_N 101 vpekklvk 108
                 vp++ lv+
  CDO68763.1 128 VPAHALVR 135
                 99998886 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   7.8e-06      0.02      25      77 ..     206     258 ..     189     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.8e-06
                 HHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCT CS
    DAGK_cat  25 lleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglle 77 
                 + ++ g ++++ + + p+  +e++k  k +gvd iv +GG Gt+ + +n++  
  CDO68763.1 206 IAKKLGATYTINYKKTPNWDEEVLKITKGRGVDHIVEVGGPGTIMKSVNCVRY 258
                 567778899****************************************9866 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     3e-05     0.078      16      91 ..      20      95 ..      11     107 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
     ADH_N_2 16 sdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyve...pvelgdvmrggavgeVveSknpdfkvGdlVvgl 91
                 +++l+e+++p+lk+ evlv+++ +S+  y    + + +  +    +   g+ m+g+ v+  +  + + +kvG+ V+++
  CDO68763.1 20 HNLTLTESPIPKLKATEVLVKVHAVSLQ-YRDLIVAKGQYPLGqkeNPVPGSDMAGEIVA--LGDEVKGWKVGERVCSN 95
                6889**********************98.3333333322211112245567777777776..34555566666666665 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.7e-05     0.069      31     113 ..     191     272 ..     181     287 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                 EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTT.TTSSSEEEEEE-HHHHHHHHHHHHH.CT-EEEEEESSS- CS
  NAD_kinase  31 vlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafa.dagvdliivvGGDGTaldvarllqk.aeiPvlgvnaGvk 113
                 + +v+  ++ +e+la a ++   + +++ k+ +  ++ +++ +    +gvd+i+ vGG GT+ + +  ++   +i v+g+ aG++
  CDO68763.1 191 GATVIATSSSDEKLAIA-KKLGATYTINYKKTP--NWDEEVLKITkGRGVDHIVEVGGPGTIMKSVNCVRYgGTISVIGFVAGQA 272
                 45555555555554433.222222222323333..77777776651689***************99999976899****999975 PP

>> DUF2117  Uncharacterized protein conserved in archaea (DUF2117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.3e-05     0.085      44     116 ..     193     280 ..     180     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
     DUF2117  44 eiilwnekaek..lakklseelglkivkpeevekeiv.........eskgkrvv..........rkiagvspgenilvnGiviGkaeseevtiv 116
                 ++i  +++ ek  +akkl  +  ++  k+++ ++e+          +      +          +++++v  g +i v G v G+a+ +e+ + 
  CDO68763.1 193 TVIATSSSDEKlaIAKKLGATYTINYKKTPNWDEEVLkitkgrgvdH------IvevggpgtimKSVNCVRYGGTISVIGFVAGQADVSELPVK 280
                 55555544444348999999999999999999988885554444430......13444555555**********************99986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2482.91
//
Query:       CDO68764.1  [L=415]
Description: hypothetical protein BN946_scf184989.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-21   75.8  54.0    2.5e-14   53.0  20.0    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0  20.0   1.4e-18   2.5e-14      39     236 ..      59     249 ..      48     252 .. 0.79
   2 !   28.8  26.0   3.1e-11   5.5e-07      32     171 ..     257     397 ..     252     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.4e-18
       MFS_1  39 tlyalgaavaslplGrlsdrfG...rrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaalia..dwfpkeergraigllsagfs 131
                  +++++++   ++ G l+dr+G     ++l +g l++ l++l+++fa+ lw +++++ v+qG++ ++++p++++ +   +wf k  r++a+g++ ag+s
  CDO68764.1  59 MIFSAATVGWGVIPGKLADRYGykgTQPFLAAGGLVWTLSMLFGVFATKLWhWFMIMGVMQGIADALVYPLIVSNFEqpQWFLK-YRALATGMVVAGSS 156
                 336666666666669******54448899999999999997888899****************************96337***9.************** PP

       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltl 229
                 +G  +  l+   +++ lg   +  i +++   +  lf+++++ ++++++ ++++          +v+  +++++dp +w + ++ ++++ fg+++  ++
  CDO68764.1 157 IGGGISSLVFREMLTKLGLKKSLAIYTALDGAL--LFAAWFMISERRKPSERKEII--------WVD--RSFFSDPIFWsVGVCYFFTV-FGYFSPIFF 242
                 ***999888888887888555555555544444..455888888888888865555........899..**********6666666666.5******** PP

       MFS_1 230 lplylqe 236
                 lp++++e
  CDO68764.1 243 LPTFTKE 249
                 ***9876 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 3.1e-11
       MFS_1  32 seigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsag 129
                   + l +t+  + aa++  ++G+l+dr+G+   l++ + l++l+ +l+++f+s++  ++++ ++ G+ +g++++++ a++a+++   + +   gll ++
  CDO68764.1 257 LLAALPVTMLNFSAAIGRTLIGFLADRMGPVNALWAVIMLSGLTqVLVWTFVSTYAGIMAFAIMYGFVCGCFLSLAPAVAAQLWGSGRLAGLSGLLLLF 355
                 5677788999999*******************************5555558777779****************************************** PP

       MFS_1 130 fslGailgpllgglla.sslg.Wravfyilaivsllafvlflll 171
                 +  G   g+++gg+++  s+g W av    +++ +l++ +  ll
  CDO68764.1 356 NLPGNSAGAPIGGAILnGSGGnWIAVSCYSGGLQVLGATC--LL 397
                 *************999555557888877777777777664..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2933.61
//
Query:       CDO68765.1  [L=351]
Description: hypothetical protein BN946_scf184989.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   43.1  45.5    2.5e-10   39.8  45.5    2.3  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8  45.5   1.4e-14   2.5e-10      60     342 ..      70     332 ..      49     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.4e-14
       MFS_1  60 Grrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyil 157
                 G +++l +g +l+ l++ll++fa++lw +++++  +   g      +++al a+wf +  r++ +g++ ag+slG ++  l+   +++ lg   +f i 
  CDO68765.1  70 GYKPFLAAGGFLWTLSMLLCVFATQLWhWFIIMVRVDLDG------TIVALPAQWFLR-YRALTTGMVVAGSSLGGAVSSLIFREMLTTLGLKKSFAIY 161
                 4667999999999999888889999997666554433333......589********9.********************999999999*********** PP

       MFS_1 158 aivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevl.glsglllaglllallal 255
                 +++   +++   ++++ ++++++ ++++          +++  +++++dpv+w+l ++++++ fg+ +  ++lp+++++ l +ls  lla+l + +l +
  CDO68765.1 162 TALDGSLLLA--AWFMISERRKPSERKEII--------WID--RSFFSDPVFWSLGACFFFTVFGYLSPIFFLPTFAKDKLpHLS-ELLAALPVTMLNF 247
                 ***9999554..888777777777765444........899..**********99999999999************887773555.7999999999999 PP

       MFS_1 256 vgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                  +a+++ l+g+l+dr+g+ ++l+  +ll  l+ ++ +++ v+ +++ ++++ +++Gf  g++ +++ a+a++l +  + + +sgl+ 
  CDO68765.1 248 SAAMGRTLIGFLADRIGPVNALWAVILLSGLTQVL-VWTFVS-NYAGIMAFAIMYGFVCGCFLSLSPAVAAQLWGSGRLAGLSGLTL 332
                 99999*************88888777776666654.455555.57888888888********************8776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2385.21
//
Query:       CDO68766.1  [L=697]
Description: hypothetical protein BN946_scf184989.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-75  252.3  36.3    8.4e-75  251.9  36.3    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
        3.3    8.0   7.3        5.6    7.2   0.5    3.6  3  DUF2304         Uncharacterized conserved protein (DUF2304)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9  36.3   9.4e-79   8.4e-75       3     380 ..      39     448 ..      36     449 .. 0.94

  Alignments for each domain:
  == domain 1  score: 251.9 bits;  conditional E-value: 9.4e-79
                     HHHHHHHHHHHH.HHHTT.SXHHHHHHHHHHHHTTTTTS..........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgll.arrlk.lpeivgliiaGlllGpsglg....lieps.eedlevlselglilllFlaGleldlrelrknlksilllallgvlit 90 
                     llil++ ++++l  +r++ ++e++++i+aG+++G++++     +i+++ ++  +++++l+l+++++++G+el+ +++++n++sil++a+lg++i+
      CDO68766.1  39 LLILSLWTSYYLqIKRIRaIHETLVAIFAGMFVGLVVRLapgtMIRDMlTFRHTLFFNLLLPPIILASGYELKQENFFRNFGSILVFAFLGTFIS 133
                     6788888888899*************************95555555559999******************************************* PP

                     HHHHHHHHH.H.....HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHH CS
  Na_H_Exchanger  91 vvliGlllyll.....lilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllll 180
                     +v++G+++ ++       lg++l+e+l fg+ lsatdpv++lai+ ++ +v+ +l+t+++ges+lnDav++v++  l +++ +++  +t ++ ++
      CDO68766.1 134 AVGVGVIVFIWsslglESLGLTLIECLTFGSTLSATDPVTILAIF-NQYKVDPKLYTIIFGESLLNDAVSIVMYETLSQFH-GSDFSVTHIFHGI 226
                     *********99***988899*************************.**********************************9.99*********** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHS..CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHH....HHHHHH... CS
  Na_H_Exchanger 181 liflvvavgglllglvigwllrlitrft..dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklsek....lesfre... 266
                     +ifl+ ++g+++lg+v+g+ ++l+++++     +++e++lv l a+++++++  l +sgi+  +++G++l++y++++ +s +    +++++    
      CDO68766.1 227 GIFLLSFGGSMALGVVFGLAMSLVLKHSslALYPSIETCLVALCAYTCYFFSNGLSMSGIVSLLFCGITLKHYAYHT-MSRRtqraTKYIFAtla 320
                     **************************************************************************999.55555677888888999 PP

                     HHHHHHHHHHHHHHSX...HHHHHX..XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX.............SSXHHHHHHCCCCSS.BHHHHHHHH CS
  Na_H_Exchanger 267 glfnplfFvlvGlsld...lkvlnn..hlsvlilvllilvaillgrilavflllrll.............glslrealiigfgglqrgavalala 343
                     +l ++++F+++Glsl+   +++  +  + + ++++ +++va++++r++avf+l+ ++              ++++ +++++++gl rgav +ala
      CDO68766.1 321 QLSENFIFIYLGLSLFtspPSSA-KitSYFKPLFIMVTTVAVVFTRYAAVFPLSEAInffhrhargqrqeEIPHSYQMMLFWAGL-RGAVGVALA 413
                     ****************6643333.36899****************************************99**************.********* PP

                     HHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 344 algpalgllarelyallivvvlftvlvqGlslkpllk 380
                     a ++    +a+ + ++++vvv++tv+v+G++++ +l+
      CDO68766.1 414 AGFKGD--NAQSMRTTVLVVVVLTVIVFGGTTARMLE 448
                     ******..9999*********************9986 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.5   0.00063       5.6      28      79 ..      26      77 ..      23      90 .. 0.88
   2 ?   -3.5   0.1       1.4   1.2e+04      36      42 ..     356     362 ..     342     376 .. 0.52
   3 ?    2.7   0.1     0.016   1.5e+02      34      64 ..     426     456 ..     415     457 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00063
     DUF2304 28 leysllwlllalilivlslfpqiltvlanllGvgrgtnllfllgivfllvil 79
                + ys + l+l+ +l++lsl+ +   +++++  ++ ++ ++f  ++v l+v l
  CDO68766.1 26 EYYSSWSLFLVCGLLILSLWTSYYLQIKRIRAIHETLVAIFAGMFVGLVVRL 77
                5678888999999********************************9999866 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.4
     DUF2304  36 llalili 42 
                 ++ ++++
  CDO68766.1 356 VTTVAVV 362
                 2111111 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.016
     DUF2304  34 wlllalilivlslfpqiltvlanllGvgrgt 64 
                   +l+++++ +++f + + ++ ++lG+ +g+
  CDO68766.1 426 TTVLVVVVLTVIVFGGTTARMLEVLGIRTGV 456
                 568999999999**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.53
# Mc/sec: 3921.46
//
Query:       CDO68767.1  [L=254]
Description: hypothetical protein BN946_scf184989.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-22   78.3   5.6    7.1e-22   78.1   5.6    1.1  1  60KD_IMP  60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   5.6     4e-26   7.1e-22       1     165 [.      12     207 ..      12     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 4e-26
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekyk......kdk...qklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsl 90 
                 + + I+  t++ r+il+p+t+kq++ +a+++  q e++ i++ ++      +     q+++  +  +Y+k+gv+  +  l  +iqlp+ ++++  +++l
  CDO68767.1  12 WFWTIVSATVLSRIILFPFTVKQMQGTAALAPYQEEIASIRDEMAlaqkrrD-TlgmQRAALRQKMIYEKAGVSFGGMALAPFIQLPVTLGMFFGVKKL 109
                 89****************************************9999987642.2455888889999********9988999*****************8 PP

    60KD_IMP  91 a.......sf....wikdLsapd....lpillavttflqqklsksk......km...qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliin 165
                         +     w++dL+  d    lpi+++v++ lq ++s++       +m   ++ +  +++   +f+++++++g+++Y ++s l+ i+q++i++
  CDO68767.1 110 CdlpveqlKYsgfeWVPDLTVVDptwtLPIIATVLMNLQITVSMRDivgqtpQMghiMNGL-RLLTTGSVFLMANLSSGVLVYLITSILMMIVQSFILR 207
                 77777655115669*******888899************9999663444455442223333.5678889999************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1896.79
//
Query:       CDO68768.1  [L=555]
Description: hypothetical protein BN946_scf184989.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-30  103.2   0.0    1.3e-06   28.0   0.1    7.6  7  TPR_1            Tetratricopeptide repeat
    9.2e-25   84.7   7.1    1.4e-05   24.8   0.1    8.9  9  TPR_2            Tetratricopeptide repeat
    7.8e-23   80.4   0.1      2e-22   79.1   0.1    1.7  1  DnaJ             DnaJ domain
    8.2e-17   60.6   6.3    2.1e-09   36.9   0.1    6.7  7  TPR_11           TPR repeat
      1e-16   61.0   6.1    0.00011   22.5   0.1    6.3  6  TPR_12           Tetratricopeptide repeat
    3.4e-15   55.9   8.8    1.9e-08   34.3   0.1    5.4  5  TPR_9            Tetratricopeptide repeat
    7.5e-12   45.7  19.2    2.1e-07   31.5   0.5    6.4  5  TPR_16           Tetratricopeptide repeat
    3.7e-11   42.3   0.2      0.011   15.9   0.0    6.7  6  TPR_8            Tetratricopeptide repeat
      4e-11   42.7  17.5     0.0018   18.9   0.0    7.9  8  TPR_14           Tetratricopeptide repeat
    5.8e-11   42.7  10.0      0.005   17.3   0.3    6.0  7  TPR_19           Tetratricopeptide repeat
      1e-06   28.4   4.5       0.35   11.0   0.0    5.9  6  TPR_7            Tetratricopeptide repeat
    1.4e-06   27.6   2.9       0.85    9.1   0.0    4.6  4  SHNi-TPR         SHNi-TPR
    2.7e-05   24.2   1.7       0.95   10.0   0.1    6.0  5  TPR_17           Tetratricopeptide repeat
    2.8e-05   24.3   3.2       0.79   10.0   0.0    4.9  5  ANAPC3           Anaphase-promoting complex, cyclosome, subun
     0.0018   17.5   5.9       0.11   11.6   0.1    3.8  3  TPR_15           Tetratricopeptide repeat
     0.0054   16.6   8.1         12    6.0   0.1    5.7  5  TPR_10           Tetratricopeptide repeat
      0.006   16.6   0.5        6.7    6.9   0.1    3.9  3  MIT              MIT (microtubule interacting and transport) 
  ------ inclusion threshold ------
      0.014   16.0   8.8       0.79   10.5   0.0    5.2  3  TPR_6            Tetratricopeptide repeat
      0.076   13.1   2.7         14    5.9   0.2    4.1  3  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
        0.4   11.1   5.9        8.6    6.8   0.0    3.0  2  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   1.5e-09   1.3e-06       7      33 ..      78     104 ..      76     105 .. 0.94
   2 !   20.4   0.1   3.5e-07   0.00031       3      31 ..     108     136 ..     106     139 .. 0.91
   3 ?    4.6   0.0     0.036        32       2      34 .]     143     175 ..     142     175 .. 0.94
   4 ?   -0.6   0.0       1.6   1.4e+03      23      33 ..     269     279 ..     266     280 .. 0.77
   5 !   12.4   0.0   0.00012      0.11       6      29 ..     298     321 ..     293     325 .. 0.90
   6 !   15.4   0.0   1.3e-05     0.012       2      33 ..     338     369 ..     337     370 .. 0.92
   7 !   11.5   0.0   0.00023      0.21       7      30 ..     377     400 ..     373     402 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.5e-09
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                  Gna fk g++ eA+e+y+kA+ l+P+
  CDO68768.1  78 QGNAAFKAGRFHEAIEHYSKAIDLQPS 104
                 59************************7 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 3.5e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALeln 31 
                  + n+++ay+ l++++ Al ++++A +l+
  CDO68768.1 108 YWTNRAAAYMALKRFKPALGDCQQAASLQ 136
                 69***********************8886 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k+l +l+ + ++ g    Al   + +L l+P+n
  CDO68768.1 143 KTLVRLARCQLSTGSTAPALSTLRSVLALDPKN 175
                 78999**************************98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.6
                 HHHHHHHHSTT CS
       TPR_1  23 yyekALelnPn 33 
                 + + AL+l+P 
  CDO68768.1 269 HVQSALRLDPG 279
                 5688******7 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 0.00012
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                   Gn+ fk gk+++A++ y++ALe
  CDO68768.1 298 EEGNLAFKTGKLQDAVDKYSEALE 321
                 569********************9 PP

  == domain 6  score: 15.4 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                   l n++ ++ kl+++++Al++ e  Lel+ +
  CDO68768.1 338 VLLSNRATTFVKLERWEDALADAETSLELDST 369
                 6799*************************975 PP

  == domain 7  score: 11.5 bits;  conditional E-value: 0.00023
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                 ++ ++ +++k+d A+ +++ A+e 
  CDO68768.1 377 RARIFVHMEKFDAAIVDFKSAIEQ 400
                 6778899***************96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.6e-08   1.4e-05       6      33 ..      77     104 ..      72     105 .. 0.93
   2 !   15.2   0.1   1.9e-05     0.017       2      31 ..     107     136 ..     106     139 .. 0.91
   3 ?    4.4   0.0     0.055        50       2      34 .]     143     175 ..     142     175 .. 0.93
   4 ?   -2.6   0.3       9.4   8.4e+03      19      30 ..     177     188 ..     176     190 .. 0.82
   5 ?    1.5   0.1      0.47   4.2e+02      13      33 ..     239     259 ..     237     260 .. 0.91
   6 ?    0.6   0.0      0.89     8e+02      20      34 .]     266     280 ..     265     280 .. 0.83
   7 !   13.9   0.0     5e-05     0.045       4      29 ..     296     321 ..     293     324 .. 0.91
   8 !   12.2   0.0   0.00017      0.15       3      33 ..     339     369 ..     337     370 .. 0.91
   9 ?    5.7   0.0      0.02        18       3      30 ..     373     400 ..     371     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.6e-08
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 ++G+a++k+g++ eA+e++ kA+ l P 
  CDO68768.1  77 EQGNAAFKAGRFHEAIEHYSKAIDLQPS 104
                 58***********************995 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.9e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  ++ n++ ay++l++++ Al ++++A +l 
  CDO68768.1 107 TYWTNRAAAYMALKRFKPALGDCQQAASLQ 136
                 68************************9997 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.055
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 + l +l+++ +  g  + Al  ++ +l+ldP+n
  CDO68768.1 143 KTLVRLARCQLSTGSTAPALSTLRSVLALDPKN 175
                 67899**************************97 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 9.4
       TPR_2  19 eAleafekAlel 30 
                  Al++ +++lel
  CDO68768.1 177 AALKLQQRVLEL 188
                 699999999998 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.47
       TPR_2  13 klgdyeeAleafekAleldPn 33 
                 ++++++ A  a + Al+ +Pn
  CDO68768.1 239 ARKNWDAASIAANDALRFEPN 259
                 579****************98 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.89
       TPR_2  20 AleafekAleldPnn 34 
                 A ++ + Al+ldP++
  CDO68768.1 266 ATQHVQSALRLDPGH 280
                 5578899******86 PP

  == domain 7  score: 13.9 bits;  conditional E-value: 5e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 l + G++++k g++++A++ + +Ale
  CDO68768.1 296 LKEEGNLAFKTGKLQDAVDKYSEALE 321
                 6788*********************8 PP

  == domain 8  score: 12.2 bits;  conditional E-value: 0.00017
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +l n++    kl ++e+Al++ e +leld +
  CDO68768.1 339 LLSNRATTFVKLERWEDALADAETSLELDST 369
                 6899************************975 PP

  == domain 9  score: 5.7 bits;  conditional E-value: 0.02
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 a   ++++  ++ +++ A+ +f+ A+e 
  CDO68768.1 373 AARTRARIFVHMEKFDAAIVDFKSAIEQ 400
                 66789********************996 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   2.2e-25     2e-22       1      63 []     431     489 ..     431     489 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 2.2e-25
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 dyY+iLgv+++++e eIkkaYr+ +lk+HPDk       eekFk i+eA+ vLsdp kR++YD
  CDO68768.1 431 DYYKILGVERTCTEMEIKKAYRRESLKHHPDKG----GDEEKFKLISEAHGVLSDPVKRQRYD 489
                 8********************************....788**********************9 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   2.3e-12   2.1e-09       1      41 [.      79     119 ..      79     120 .. 0.97
   2 ?    2.2   0.0      0.16   1.4e+02      13      30 ..     161     178 ..     153     179 .. 0.80
   3 ?    1.6   0.2      0.24   2.2e+02      18      31 ..     251     264 ..     238     266 .. 0.83
   4 ?   -3.3   0.0       8.6   7.7e+03      18      25 ..     271     278 ..     271     278 .. 0.88
   5 !   10.4   0.1   0.00044      0.39       1      22 [.     300     321 ..     300     321 .. 0.95
   6 ?    1.0   0.0      0.37   3.4e+02       4      28 ..     347     371 ..     345     373 .. 0.85
   7 ?    4.1   0.0     0.042        38       2      22 ..     379     399 ..     378     401 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.3e-12
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G+a ++ G++ eAie+Y+kA++l P+ ++ + n+++ay+++
  CDO68768.1  79 GNAAFKAGRFHEAIEHYSKAIDLQPSEPTYWTNRAAAYMAL 119
                 99************************************975 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.16
      TPR_11  13 AieaYkkAlkldPdnaea 30 
                 A+  ++  l+ldP+n  a
  CDO68768.1 161 ALSTLRSVLALDPKNDAA 178
                 8889999********876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.24
      TPR_11  18 kkAlkldPdnaeay 31 
                 + Al++ P++++a+
  CDO68768.1 251 NDALRFEPNSPDAL 264
                 569*********96 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.6
      TPR_11  18 kkAlkldP 25 
                 + Al+ldP
  CDO68768.1 271 QSALRLDP 278
                 67*****9 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00044
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G++ ++ Gk+ +A+ +Y++Al+
  CDO68768.1 300 GNLAFKTGKLQDAVDKYSEALE 321
                 8999****************97 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.37
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdna 28 
                 ++++ ++e+A+++ ++ l+ld+++ 
  CDO68768.1 347 FVKLERWEDALADAETSLELDSTSF 371
                 78999*******9999999998765 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.042
      TPR_11   2 dayyeqGkyeeAieaYkkAlk 22 
                 ++++   k+++Ai ++k A++
  CDO68768.1 379 RIFVHMEKFDAAIVDFKSAIE 399
                 5778889*************8 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   9.3e-05     0.084       9      33 ..      78     102 ..      71     106 .. 0.87
   2 !   15.9   0.0   1.3e-05     0.012       6      76 ..     109     173 ..     104     174 .. 0.90
   3 ?   -0.5   0.1       1.7   1.6e+03      20      33 ..     176     189 ..     174     200 .. 0.72
   4 ?    0.1   0.0       1.2     1e+03      15      40 ..     200     224 ..     196     227 .. 0.83
   5 !   22.5   0.1   1.2e-07   0.00011      10      75 ..     300     367 ..     295     369 .. 0.93
   6 ?    5.5   0.0     0.024        21       6      41 ..     374     408 ..     369     429 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.3e-05
      TPR_12   9 laavlrrlgrydeAlellekaleia 33 
                  +++ +++gr++eA+e++ ka++++
  CDO68768.1  78 QGNAAFKAGRFHEAIEHYSKAIDLQ 102
                 799999***************9985 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.3e-05
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++n+aa++++l+r+  Al  +++a  ++++ + p+      tl  L+r+++ +g ++ Al+ l+ +la+++
  CDO68768.1 109 WTNRAAAYMALKRFKPALGDCQQAASLQSANPSPK------TLVRLARCQLSTGSTAPALSTLRSVLALDP 173
                 669*************************8885554......69************************9976 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.7
      TPR_12  20 deAlellekaleia 33 
                 d Al+l +++le+ 
  CDO68768.1 176 DAALKLQQRVLELE 189
                 67888888888875 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.2
      TPR_12  15 rlgrydeAlellekaleiarrllGpd 40 
                  ++++  A+  l+k+++++++  G d
  CDO68768.1 200 SRKEWGMARIALDKCMQVIENEGG-D 224
                 5788999************98854.4 PP

  == domain 5  score: 22.5 bits;  conditional E-value: 1.2e-07
      TPR_12  10 aavlrrlgrydeAlellekaleia.rrl.lGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +++ ++ g++++A + + +ale++ +    G   +  a  l n ++++ +l+r+e+Al+  e +l+++
  CDO68768.1 300 GNLAFKTGKLQDAVDKYSEALERIgSDErEGSGGHIRAVLLSNRATTFVKLERWEDALADAETSLELD 367
                 78999*******************9777688888*******************************985 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.024
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdh 41 
                 ++ +a +  +++++d A+  ++ a+e+a+ l G d 
  CDO68768.1 374 ARTRARIFVHMEKFDAAIVDFKSAIEQAE-LEGSDA 408
                 5567889999*****************95.556665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.4e-05     0.021       4      61 ..      81     138 ..      78     149 .. 0.87
   2 ?    6.0   0.1     0.015        13      28      71 ..     141     184 ..     132     186 .. 0.85
   3 ?    2.0   0.1      0.26   2.4e+02       6      31 ..     238     263 ..     235     267 .. 0.89
   4 ?   -0.3   0.0       1.4   1.2e+03      28      50 ..     292     314 ..     262     329 .. 0.57
   5 !   34.3   0.1   2.2e-11   1.9e-08       8      72 ..     350     417 ..     345     418 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-05
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 +a  + ++ +a++ +   + l+P +p  +  R+ +++ l +++ Al d +++++l+ +
  CDO68768.1  81 AAFKAGRFHEAIEHYSKAIDLQPSEPTYWTNRAAAYMALKRFKPALGDCQQAASLQSA 138
                 567788999999999999********************************99976654 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.015
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaq 71 
                 +p  +   ++++   G ++ Al  L   lal+p++++a  ++++
  CDO68768.1 141 SPKTLVRLARCQLSTGSTAPALSTLRSVLALDPKNDAALKLQQR 184
                 56666668999999**********************99999887 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.26
       TPR_9   6 ireedweralavverllllaPddpee 31 
                 i +++w++a  +++  l + P++p+ 
  CDO68768.1 238 IARKNWDAASIAANDALRFEPNSPDA 263
                 67899*****************9986 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.4
       TPR_9  28 dpeerrdRGlllaqlGclsaAla 50 
                 d+e + + G l ++ G l+ A++
  CDO68768.1 292 DVERLKEEGNLAFKTGKLQDAVD 314
                 34444455555555555555555 PP

  == domain 5  score: 34.3 bits;  conditional E-value: 2.2e-11
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap...dapdaeairaqL 72 
                  e+we ala +e  l l++ +    r R+++ ++++ + aA+ d+  ++++a+   +++d++a++a L
  CDO68768.1 350 LERWEDALADAETSLELDSTSFKAARTRARIFVHMEKFDAAIVDFKSAIEQAElegSDADVRALKAEL 417
                 589**********************************************8888888******999877 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.5   2.4e-10   2.1e-07       3      61 ..      78     133 ..      76     142 .. 0.90
   2 ?    5.6   0.0     0.028        25      37      67 ..     145     175 ..     130     176 .. 0.86
   3 ?    0.4   0.6       1.2   1.1e+03      10      34 ..     240     264 ..     233     287 .. 0.64
   4 !    7.6   0.0    0.0068       6.1       3      26 ..     299     322 ..     297     330 .. 0.77
   5 !    9.9   0.1    0.0013       1.1       3      63 ..     343     400 ..     341     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.4e-10
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +++aa++ag++ +A++ +  a++++   P  +  + +++ a+ +++r+++A+  ++ a+
  CDO68768.1  78 QGNAAFKAGRFHEAIEHYSKAIDLQ---PSEPTYWTNRAAAYMALKRFKPALGDCQQAA 133
                 89***********************...9999*******************98887776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.028
      TPR_16  37 llllgdaalrqgrlaeAaalyraalraapda 67 
                 l  l+++ l  g  a+A+  +r+ l+ +p++
  CDO68768.1 145 LVRLARCQLSTGSTAPALSTLRSVLALDPKN 175
                 6789**********************99986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.2
      TPR_16  10 agdyddAaaaleaalkrdpssPdaa 34 
                 ++++d+A  a++ al+  p sPda 
  CDO68768.1 240 RKNWDAASIAANDALRFEPNSPDAL 264
                 5566666666666666666666543 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0068
      TPR_16   3 laraalragdyddAaaaleaalkr 26 
                 ++++a++ g+ +dA+  + +al+r
  CDO68768.1 299 EGNLAFKTGKLQDAVDKYSEALER 322
                 678888888888888888888876 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.0013
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +a+ ++++ +++dA+a +e+ l++d   +    A+  +++++ +   +++A+  +++a+++
  CDO68768.1 343 RATTFVKLERWEDALADAETSLELD---STSFKAARTRARIFVHMEKFDAAIVDFKSAIEQ 400
                 79999********************...878899999999999999999999777777655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.2e-05     0.011       8      33 ..      79     104 ..      77     105 .. 0.93
   2 ?    5.9   0.0      0.02        18       3      33 ..     108     138 ..     106     139 .. 0.89
   3 ?    6.1   0.0     0.017        15       2      34 .]     143     175 ..     142     175 .. 0.94
   4 ?   -0.2   0.0       1.7   1.5e+03       8      29 ..     300     321 ..     299     324 .. 0.88
   5 ?   -1.0   0.0       3.2   2.9e+03       6      32 ..     342     368 ..     339     369 .. 0.84
   6 ?    4.3   0.0     0.063        56       8      29 ..     378     399 ..     376     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                 HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpd 33 
                 g++ +k g+++eA+e y ka++l+p+
  CDO68768.1  79 GNAAFKAGRFHEAIEHYSKAIDLQPS 104
                 88999*******************96 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ n + +y+ l++++ A   +++a +l+ +
  CDO68768.1 108 YWTNRAAAYMALKRFKPALGDCQQAASLQSA 138
                 79****************9999999999865 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.017
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + +++l+++ l++g    A ++++ +l ldp+n
  CDO68768.1 143 KTLVRLARCQLSTGSTAPALSTLRSVLALDPKN 175
                 56899**************************97 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.7
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekale 29 
                 g++ +k+g+++ A+  y +ale
  CDO68768.1 300 GNLAFKTGKLQDAVDKYSEALE 321
                 78999********999999887 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 3.2
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 n + +  kl++ e A +  e  leld 
  CDO68768.1 342 NRATTFVKLERWEDALADAETSLELDS 368
                 6777888999999999********995 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.063
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekale 29 
                 ++i   ++++++A+  ++ a+e
  CDO68768.1 378 ARIFVHMEKFDAAIVDFKSAIE 399
                 889999**************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     2e-06    0.0018       7      42 ..      78     113 ..      73     115 .. 0.91
   2 ?    6.1   0.2     0.026        23       7      43 ..     112     150 ..     109     151 .. 0.78
   3 !   11.6   0.0   0.00047      0.42       2      39 ..     143     180 ..     142     186 .. 0.91
   4 ?    6.7   0.1     0.017        16       8      39 ..     234     265 ..     228     267 .. 0.87
   5 ?   -0.4   0.0       3.1   2.8e+03      20      38 ..     266     284 ..     265     287 .. 0.82
   6 ?    0.5   0.0       1.6   1.5e+03      10      30 ..     302     322 ..     295     329 .. 0.80
   7 ?   -0.4   0.1       3.1   2.8e+03       7      34 ..     343     370 ..     339     377 .. 0.74
   8 !    7.6   0.1    0.0086       7.7       3      44 .]     373     417 ..     371     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2e-06
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                  + a + +G++ eAi+++ +a++l+P+++++w+  a
  CDO68768.1  78 QGNAAFKAGRFHEAIEHYSKAIDLQPSEPTYWTNRA 113
                 5789999*************************9887 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.026
      TPR_14   7 laeallalGdpdeAiallrralalaPdd..aeawlllaq 43 
                 +a+a++al +++ A+  +++a +l+ ++  + ++ +la+
  CDO68768.1 112 RAAAYMALKRFKPALGDCQQAASLQSANpsPKTLVRLAR 150
                 799******************996554412567777777 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00047
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawl 39 
                 + l +la+  l  G ++ A+  lr +lal+P++++a+ 
  CDO68768.1 143 KTLVRLARCQLSTGSTAPALSTLRSVLALDPKNDAALK 180
                 567899***************************99975 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.017
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawl 39 
                 +e + a+ ++d+A  ++++al+  P++++a++
  CDO68768.1 234 VEHEIARKNWDAASIAANDALRFEPNSPDALT 265
                 56678999*******************99986 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 3.1
      TPR_14  20 AiallrralalaPddaeaw 38 
                 A ++ + al+l+P++ +a 
  CDO68768.1 266 ATQHVQSALRLDPGHVAAM 284
                 6678899******998875 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 1.6
      TPR_14  10 allalGdpdeAiallrralal 30 
                 + +  G++++A++ + +al++
  CDO68768.1 302 LAFKTGKLQDAVDKYSEALER 322
                 56778999*********9997 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 3.1
      TPR_14   7 laeallalGdpdeAiallrralalaPdd 34 
                 +a  +  l+++++A+a ++  l+l+ ++
  CDO68768.1 343 RATTFVKLERWEDALADAETSLELDSTS 370
                 5667788899999999888888877554 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.0086
      TPR_14   3 allalaeallalGdpdeAiallrralalaP...ddaeawlllaql 44 
                 a + +a+++ + +++d+Ai  ++ a+++a    +da+++ l a+l
  CDO68768.1 373 AARTRARIFVHMEKFDAAIVDFKSAIEQAElegSDADVRALKAEL 417
                 77899**********************875444888888888875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.1e-05     0.019       1      45 [.      82     126 ..      82     134 .. 0.94
   2 !   17.3   0.3   5.5e-06     0.005      21      66 ..     139     183 ..     125     185 .. 0.76
   3 ?    0.4   0.0       1.1   9.5e+02      28      61 ..     230     263 ..     210     270 .. 0.77
   4 ?    0.6   0.0      0.95   8.5e+02       9      28 ..     265     284 ..     262     287 .. 0.85
   5 ?    3.5   0.0      0.11     1e+02       2      45 ..     304     357 ..     303     358 .. 0.68
   6 !    7.2   0.5    0.0081       7.3       6      68 .]     352     417 ..     347     417 .. 0.89
   7 ?    3.7   0.1       0.1        90       4      34 ..     384     417 ..     381     427 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.1e-05
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 ++++g++ eA++++++a++  p  +  + + A a++al++++ A 
  CDO68768.1  82 AFKAGRFHEAIEHYSKAIDLQPSEPTYWTNRAAAYMALKRFKPAL 126
                 5799*************************************9885 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 5.5e-06
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 +p ++  + +LA+++l++g ++ A  +L  +++ dp++ ++ +L++
  CDO68768.1 139 NP-SPKTLVRLARCQLSTGSTAPALSTLRSVLALDPKNDAALKLQQ 183
                 33.8888899***************************655555655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.1
      TPR_19  28 rllLAeallalgqldeAealLdalpeedpddary 61 
                 rl+ +e  +a +++d+A  + +++++ +p+++++
  CDO68768.1 230 RLWKVEHEIARKNWDAASIAANDALRFEPNSPDA 263
                 4444888899999999999999999999998776 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.95
      TPR_19   9 eAlalleqalqedpknaear 28 
                  A ++ ++al  dp++ +a 
  CDO68768.1 265 TATQHVQSALRLDPGHVAAM 284
                 68899**********99885 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.11
      TPR_19   2 laegdyaeAlalleqalqe........dpknaearllL..AeallalgqldeAe 45 
                 ++ g++++A++ +++al+         + ++ +a ll   A   ++l ++++A 
  CDO68768.1 304 FKTGKLQDAVDKYSEALERigsderegSGGHIRAVLLSnrATTFVKLERWEDAL 357
                 67799************7655544544555666665224477788887777775 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0081
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd...daryasLlAkl 68 
                 + ++Ala  e  l+ d  +  a+   A++ + +  +d+A+   + + e++     da++++L+A l
  CDO68768.1 352 RWEDALADAETSLELDSTSFKAARTRARIFVHMEKFDAAIVDFKSAIEQAELegsDADVRALKAEL 417
                 6789999999999999999999999**************999999999999888779999999976 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.1
      TPR_19   4 egdyaeAlalleqalqe...dpknaearllLAea 34 
                 ++++++A+  +++a+++   +  +a++r+l Ae+
  CDO68768.1 384 MEKFDAAIVDFKSAIEQaelEGSDADVRALKAEL 417
                 7889999999999996656677799999988876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00039      0.35       6      35 ..      79     106 ..      77     107 .. 0.90
   2 ?   -1.5   0.0       3.9   3.5e+03      12      20 ..     126     134 ..     109     135 .. 0.62
   3 ?    1.1   0.0      0.58   5.2e+02       1      29 [.     144     172 ..     144     179 .. 0.83
   4 ?    3.1   0.0      0.14   1.2e+02       6      28 ..     300     323 ..     300     329 .. 0.76
   5 !    8.2   0.1    0.0031       2.8       2      33 ..     340     371 ..     339     374 .. 0.89
   6 ?   -0.3   0.0       1.6   1.4e+03       6      30 ..     378     400 ..     377     407 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpeda 35 
                 +++ ++ G++ eAie+y +  a++ +p+++
  CDO68768.1  79 GNAAFKAGRFHEAIEHYSK--AIDLQPSEP 106
                 7888999************..999999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.9
       TPR_7  12 lGdyeeAie 20 
                 lGd ++A++
  CDO68768.1 126 LGDCQQAAS 134
                 677777765 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.58
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 +L++Lar++ + G ++ A++ ++ +Lal+
  CDO68768.1 144 TLVRLARCQLSTGSTAPALSTLRSVLALD 172
                 7999*********9999999999966665 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.14
       TPR_7   6 arlysrlGdyeeAielyeqsL.al 28 
                 ++l ++ G+ ++A++ y ++L ++
  CDO68768.1 300 GNLAFKTGKLQDAVDKYSEALeRI 323
                 6788899***********955444 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0031
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 L+n a ++++l ++e+A+   e sL+l++  +
  CDO68768.1 340 LSNRATTFVKLERWEDALADAETSLELDSTSF 371
                 8999*******************999998655 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 1.6
       TPR_7   6 arlysrlGdyeeAielyeqsLaltk 30 
                 ar+++ + +++ Ai  ++   a++ 
  CDO68768.1 378 ARIFVHMEKFDAAIVDFKS--AIEQ 400
                 899999*******987777..5554 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0014       1.3      12      31 ..      83     102 ..      76     104 .. 0.87
   2 ?    0.7   0.2      0.42   3.8e+02      26      37 ..     177     188 ..     176     189 .. 0.85
   3 ?    5.2   0.1     0.016        14      15      30 ..     351     366 ..     348     370 .. 0.95
   4 !    9.1   0.0   0.00094      0.85      14      29 ..     384     399 ..     380     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
    SHNi-TPR  12 lEnenFpqAveDlrkaLeLr 31 
                 + +++F++A+e + ka++L+
  CDO68768.1  83 FKAGRFHEAIEHYSKAIDLQ 102
                 6789***************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
    SHNi-TPR  26 kaLeLreqllpp 37 
                 +aL+L++ +l+ 
  CDO68768.1 177 AALKLQQRVLEL 188
                 79*****99985 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
    SHNi-TPR  15 enFpqAveDlrkaLeL 30 
                 e+ ++A+ D +++LeL
  CDO68768.1 351 ERWEDALADAETSLEL 366
                 899************8 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00094
    SHNi-TPR  14 nenFpqAveDlrkaLe 29 
                  e+F+ A+ D+++a+e
  CDO68768.1 384 MEKFDAAIVDFKSAIE 399
                 69************86 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0011      0.95       2      28 ..      95     121 ..      94     133 .. 0.86
   2 ?    1.5   0.1      0.53   4.7e+02       3      17 ..     251     265 ..     249     266 .. 0.86
   3 ?    0.0   0.0       1.6   1.4e+03      13      33 ..     337     357 ..     336     358 .. 0.86
   4 ?    4.8   0.0     0.049        44       3      32 ..     361     390 ..     359     391 .. 0.89
   5 ?   -2.1   0.0       7.4   6.7e+03       7      24 ..     402     419 ..     401     430 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
      TPR_17   2 ylkaleldPnnadaynnLAelllknGd 28 
                 y ka++l P+ +  ++n+A ++  +++
  CDO68768.1  95 YSKAIDLQPSEPTYWTNRAAAYMALKR 121
                 99********************97765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.53
      TPR_17   3 lkaleldPnnadayn 17 
                   al+ +Pn++da++
  CDO68768.1 251 NDALRFEPNSPDALT 265
                 579*********985 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.6
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a+++ n+A+++ k+ ++++A+
  CDO68768.1 337 AVLLSNRATTFVKLERWEDAL 357
                 56788********99999996 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.049
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtA 32 
                 + +leld ++++a   +A+++ +  +++ A
  CDO68768.1 361 ETSLELDSTSFKAARTRARIFVHMEKFDAA 390
                 789*****************9988888877 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 7.4
      TPR_17   7 eldPnnadaynnLAelll 24 
                 el+ ++ad+  ++Ael +
  CDO68768.1 402 ELEGSDADVRALKAELKK 419
                 566689999999998855 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00088      0.79      30      76 ..      79     126 ..      71     132 .. 0.91
   2 ?    4.8   0.0     0.036        33      20      61 ..     139     181 ..     129     191 .. 0.81
   3 ?    0.6   0.1      0.73   6.5e+02       3      47 ..     241     287 ..     239     325 .. 0.60
   4 ?    4.4   0.0     0.048        43      30      76 ..     344     391 ..     334     397 .. 0.88
   5 ?    1.2   0.1       0.5   4.4e+02      40      76 ..     354     391 ..     351     438 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00088
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 + + +++g++++A+e ++ka +l+++ + ++   A ++ +Lk+++ A+
  CDO68768.1  79 GNAAFKAGRFHEAIEHYSKAiDLQPSEPTYWTNRAAAYMALKRFKPAL 126
                 6788**************************************998776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.036
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHH CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnskslgcryl 61 
                 + sp+ +  lA c +++g    A+  lr+   l++k+ +++ l
  CDO68768.1 139 NPSPKTLVRLARCQLSTGSTAPALSTLRSVlALDPKNDAALKL 181
                 4567777779******************999999999888766 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.73
                 T-HHHHHHHHHHHH.HHH--HHHHHH..HHHHHHHTT-HHHHHHHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayl..lAlclylngqykrAyellr 47 
                 +n++ A + a+ +l  e++sp+++ +  + ++ +++   + A   lr
  CDO68768.1 241 KNWDAASIAANDALRFEPNSPDALTAtqHVQSALRLDPGHVAAMKLR 287
                 68888888888888888888888554114555555444444444444 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.048
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 A ++ ++++++ A+  ++++ +l+s+s +++ + A+  + ++k++ Ai
  CDO68768.1 344 ATTFVKLERWEDALADAETSlELDSTSFKAARTRARIFVHMEKFDAAI 391
                 7788999999**********9***************999999999998 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.5
                 HHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  40 krAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 + A+  ++++ +l+s+s +++ + A+  + ++k++ Ai
  CDO68768.1 354 EDALADAETSlELDSTSFKAARTRARIFVHMEKFDAAI 391
                 44555555555555555555555555555555555554 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0016       1.4     128     179 ..      87     139 ..      77     141 .. 0.74
   2 !   11.6   0.1   0.00013      0.11     136     182 ..     132     178 ..     129     182 .. 0.90
   3 ?    0.9   0.4      0.23   2.1e+02     116     180 ..     303     371 ..     282     429 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
      TPR_15 128 riaellksleeeeaae.qsaafllaraelyrqegqtdaAlrdyreAlalapds 179
                 r  e ++  ++  +++ ++++++  ra++y +  + + Al d ++A +l+ ++
  CDO68768.1  87 RFHEAIEHYSKAIDLQpSEPTYWTNRAAAYMALKRFKPALGDCQQAASLQSAN 139
                 55566667777777777888888888888888888888888888888887665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
      TPR_15 136 leeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdssel 182
                 + +++ a+ s+  l+++a+ ++ +g t+ Al  +r +lal+p+++++
  CDO68768.1 132 AASLQSANPSPKTLVRLARCQLSTGSTAPALSTLRSVLALDPKNDAA 178
                 45678899**********************************98765 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.23
      TPR_15 116 alellerakdydriaellksleeeea....aeqsaafllaraelyrqegqtdaAlrdyreAlalapdss 180
                 a+++++ + ++d+  e l+++ ++e+        a  l+ ra    +  ++++Al d++  l+l+ +s 
  CDO68768.1 303 AFKTGKLQDAVDKYSEALERIGSDERegsgGHIRAVLLSNRATTFVKLERWEDALADAETSLELDSTSF 371
                 555555566666666666665544443333335677788888888888888888888888888877764 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.043        38       9      31 ..      79     101 ..      79     102 .. 0.90
   2 ?    5.0   0.1     0.026        23       7      31 ..     111     135 ..     110     137 .. 0.91
   3 ?    0.3   0.1      0.79     7e+02      19      31 ..     176     188 ..     174     192 .. 0.71
   4 ?   -1.1   0.0       2.2     2e+03      10      29 ..     301     320 ..     300     322 .. 0.67
   5 ?    6.0   0.1     0.013        12       2      30 ..     337     365 ..     336     367 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.043
      TPR_10   9 analrqrgrydeAealleealai 31 
                 +na ++ gr++eA +++ +a+++
  CDO68768.1  79 GNAAFKAGRFHEAIEHYSKAIDL 101
                 789999***********999976 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.026
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                 N a+a+ +++r++ A+ ++++a ++
  CDO68768.1 111 NRAAAYMALKRFKPALGDCQQAASL 135
                 88*******************9875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.79
      TPR_10  19 deAealleealai 31 
                 d+A++l++++l++
  CDO68768.1 176 DAALKLQQRVLEL 188
                 6777888777765 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.2
      TPR_10  10 nalrqrgrydeAealleeal 29 
                 n+ +++g++++A++ + eal
  CDO68768.1 301 NLAFKTGKLQDAVDKYSEAL 320
                 66677888888887665555 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.013
      TPR_10   2 AsslnNLanalrqrgrydeAealleeala 30 
                 A  l+N a +  ++ r+++A+a++e +l+
  CDO68768.1 337 AVLLSNRATTFVKLERWEDALADAETSLE 365
                 5678999999999*************998 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0075       6.7      16      33 ..      84     101 ..      80     101 .. 0.93
   2 ?   -1.6   0.0       3.2   2.9e+03      23      50 ..     118     147 ..     115     152 .. 0.79
   3 ?    4.7   0.0     0.036        33      17      32 ..     306     321 ..     305     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0075
         MIT  16 nagnyeeAlelYkealel 33 
                 +ag + eA+e Y++a++l
  CDO68768.1  84 KAGRFHEAIEHYSKAIDL 101
                 5899************96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.2
         MIT  23 AlelYkealelLlqalk.e.kneerrellr 50 
                 Al+ +k al+ ++qa + +  n++ + l+r
  CDO68768.1 118 ALKRFKPALGDCQQAASlQsANPSPKTLVR 147
                 899999999999999997677777776665 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.036
         MIT  17 agnyeeAlelYkeale 32 
                  g+ ++A+++Y+eale
  CDO68768.1 306 TGKLQDAVDKYSEALE 321
                 5899**********98 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018        16       6      31 ..      78     103 ..      77     105 .. 0.90
   2 ?   10.5   0.0   0.00088      0.79       3      32 ..     145     174 ..     143     175 .. 0.93
   3 ?    0.3   0.0       1.6   1.4e+03       9      28 ..     302     321 ..     299     322 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 ++ + +k+g+  +A+e + + i+  P
  CDO68768.1  78 QGNAAFKAGRFHEAIEHYSKAIDLQP 103
                 688999999*************9988 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00088
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 l +la++++++g t+ Al +l++++   P+
  CDO68768.1 145 LVRLARCQLSTGSTAPALSTLRSVLALDPK 174
                 789*******99*************99987 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerlik 28 
                 + +k+g+ ++A++ + + ++
  CDO68768.1 302 LAFKTGKLQDAVDKYSEALE 321
                 56777788888888887766 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.2     2e+03      33      43 ..     128     138 ..     113     140 .. 0.87
   2 ?    5.9   0.2     0.015        14      20      44 ..     161     185 ..     159     187 .. 0.90
   3 ?    4.1   0.0     0.054        48      19      46 ..     265     292 ..     264     300 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
                 S-HHHHHHHHH CS
  Fis1_TPR_C  33 enrQaqsLkel 43 
                 +++Qa+sL+++
  CDO68768.1 128 DCQQAASLQSA 138
                 68999999975 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHTTS-HHHHHHHHHH CS
  Fis1_TPR_C  20 ArryvdalLeiEPenrQaqsLkeli 44 
                 A+  ++ +L+++P+n  a++L++ +
  CDO68768.1 161 ALSTLRSVLALDPKNDAALKLQQRV 185
                 7888999***************976 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.054
                 HHHHHHHHHHHHTTS-HHHHHHHHHHHH CS
  Fis1_TPR_C  19 eArryvdalLeiEPenrQaqsLkelied 46 
                 +A + v+  L+++P+   a +L++ i+d
  CDO68768.1 265 TATQHVQSALRLDPGHVAAMKLRKRIKD 292
                 68999*********************97 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.011        10      55     119 ..      58     122 ..      49     127 .. 0.86
   2 ?    6.8   0.0    0.0096       8.6      58     115 ..     131     188 ..     124     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
                      HHHHHHHHHHHTTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  55 peekakrlvelmGgaekvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyq 119
                      p++k    v+ + +aekv e+ ++a+k+g ++ a+e  ++++  +p++ +  + +a+a+ +l ++
       CDO68768.1  58 PKRKQVTAVDPVVEAEKVKEQGNAAFKAGRFHEAIEHYSKAIDLQPSEPTYWTNRAAAYMALKRF 122
                      566666667777789********************************999999999999988776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0096
                      HHHHHHHHTTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  58 kakrlvelmGgaekvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleq 115
                      +a+ l ++  + +++++ a+ +l+ g    a++ l  +++ dp+n++a +l+ ++le 
       CDO68768.1 131 QAASLQSANPSPKTLVRLARCQLSTGSTAPALSTLRSVLALDPKNDAALKLQQRVLEL 188
                      56666666667889999**********************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1405  (0.0783647); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 3552.64
//
Query:       CDO68769.1  [L=129]
Description: hypothetical protein BN946_scf184989.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.01   16.3   3.3       0.11   12.9   0.8    2.2  2  DUF202    Domain of unknown function (DUF202)
      0.094   12.6   0.7       0.28   11.1   0.7    1.7  1  MtrG      Tetrahydromethanopterin S-methyltransferase, subuni
        2.5    8.3   5.8        1.6    8.9   2.0    2.1  2  SdpI      SdpI/YhfL protein family


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   1.9e-05      0.11      12      66 ..      20      69 ..      11      71 .. 0.80
   2 ?    3.9   0.1     0.012        72      41      57 ..     102     118 ..      72     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
      DUF202 12 aWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrq 66
                a+ R ++a ++ +l++lr+f +       + +g+++ +l+ ++++++++r ++++
  CDO68769.1 20 AYGRSAIANLGYALTILRLFDQRF-----FKIGILYTALAGMLFILAYFRQRHSR 69
                899***************955544.....45699999999999999999988776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
      DUF202  41 kilglilivlgiltllv 57 
                 + +g+i ++l+i++++v
  CDO68769.1 102 VTAGWIVALLSIVVFAV 118
                 45688888888888776 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   4.6e-05      0.28      45      62 ..      46      63 ..      44      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.6e-05
        MtrG 45 iGilYGlviGliillvyi 62
                iGilY +++G++++l+y+
  CDO68769.1 46 IGILYTALAGMLFILAYF 63
                9**************996 PP

>> SdpI  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.088   5.3e+02      33      49 ..      43      58 ..      28      65 .. 0.62
   2 ?    8.9   2.0   0.00027       1.6      27      62 ..      95     126 ..      91     129 .] 0.67

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.088
        SdpI 33 wiiaGlilllla.lgavv 49
                ++ +G+++ +la +  ++
  CDO68769.1 43 FFKIGILYTALAgM--LF 58
                55566666666521..11 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00027
        SdpI  27 rfagklwiiaGlillllalgavvlvllvlvlllviv 62 
                 r++g+ ++ aG+i++ll++    +v+ v ++llv++
  CDO68769.1  95 RIFGRPFVTAGWIVALLSI----VVFAVEICLLVLI 126
                 899***************3....2222333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 905.51
//
Query:       CDO68770.1  [L=613]
Description: hypothetical protein BN946_scf184989.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3946.59
//
Query:       CDO68771.1  [L=546]
Description: hypothetical protein BN946_scf184989.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-46  158.3  42.7    4.1e-46  157.7  42.7    1.2  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
        0.3   10.8   3.7       0.92    9.3   2.8    2.4  2  Trp_oprn_chp   Tryptophan-associated transmembrane protein (T


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7  42.7   4.5e-50   4.1e-46       3     424 ..      52     496 ..      47     499 .. 0.84

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 4.5e-50
  AA_permease_2   3 llsafalvigsvigsgifvknlaasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkva....flsawfnwfayvpvla 93 
                    ++s ++ ++g++ +++ ++ + +  ggpa+++w wi    +++++++ +aE+ s+ +p+ gG+y+ ++++ ++k+     ++++w+n ++++++l+
     CDO68771.1  52 TISFAFSIMGLCSSVATTFNSPLFLGGPASVTWCWILGATMCFTLGASIAEIvSA-FPTCGGLYTASAQLVPRKHRaivgWVVGWLNILGQILGLS 146
                    4455556666668877777775558999999999988888889*********888.***************877666677**************** PP

  AA_permease_2  94 silsvaasyllnal..gp..dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdtf 182
                    s+   +a+++ +a+  g+  d++ +   ++++++++l+l+ ++n+++++ +a++++  + ++i  +lii+i+l   t +  ++s +     e+   
     CDO68771.1 147 STEFGLANMIWSAVvvGKdgDFTITAGKSVGLFAGLLVLHGILNCLATRQLARLTTGFVFINIGATLIIIIVLLATTPRSEMHSAAyvfGSEGVIN 242
                    **********777623446799999999***********************************999999999999999999999777753333334 PP

  AA_permease_2 183 fpngwpg...vllgllivlwsfd..........Gfesaanvseevkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffe 265
                    +++gw++   +l+gll v+w++            +++ a++seevk+  + +a+++++ i++++++l+ni+++ ++++ e   +s+          
     CDO68771.1 243 QTGGWNTgiaFLFGLLSVQWTVNdsecllfqdlDYDATAHISEEVKR--AAVAAPSAIFIAGLIGWLLNIVLVLCSGPLENLASST---------- 326
                    55599975556888888888875222222222268889999999986..55688888888889999999999***99977766665.......... PP

  AA_permease_2 266 avggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgl 358
                    +  g+++  i+v+ +    ++ + ta+ ++sr+++a++rd++lP   ff +v+  +++p+rai+++ i+  il  l+ las+ a+n+++++++++l
     CDO68771.1 327 TISGSAFLEIMVLRMGKPGALFLWTALQAASRTVYAFSRDKGLPdrGFFGHVSsWTQTPLRAIWFVTIIG-ILPGLLDLASTIAVNAIFAMTAMAL 421
                    345699999********************************************88**************9.77777878899************** PP

  AA_permease_2 359 iisyllliigalilrkkrphlkr...pgk......ilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                     +sy+++i+ + ++r +++++ +   +++      ++ +i  +l++lf++v++++p++ p+t+++++y+  +t++
     CDO68771.1 422 DLSYIIPIFFRRWYRNHPEVQFTpgpFYMgdgiigWIANINCILWTLFVCVIFALPTVLPVTGQTMNYAAPITGG 496
                    *****************99994434466688999999********************************665554 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.3   2.7e+03     119     158 ..      83     122 ..      62     165 .. 0.61
   2 ?    9.3   2.8    0.0001      0.92      49     100 ..     181     232 ..     150     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.3
  Trp_oprn_chp 119 pvlalaggvllllagvllllrarswpamssrYerpaarra 158
                    +  ++g+ +++  g+ ++   ++ p+ ++ Y ++a+   
    CDO68771.1  83 TWCWILGATMCFTLGASIAEIVSAFPTCGGLYTASAQLVP 122
                   5666666666666666666666666666666655555333 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0001
  Trp_oprn_chp  49 AlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaa 100
                   +l++l +++ +la+r+l+r   g + + +ga++++  + l+t+p +   +aa
    CDO68771.1 181 GLLVLHGILNCLATRQLARLTTGFVFINIGATLIIIIVLLATTPRSEMHSAA 232
                   78999**********************************9999887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3635.72
//
Query:       CDO68772.1  [L=176]
Description: hypothetical protein BN946_scf184989.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.5   1.6        1.8    8.7   0.0    2.5  2  DUF962    Protein of unknown function (DUF962)


Domain annotation for each model (and alignments):
>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   9.8e-05       1.8      43      76 ..      50     122 ..       5     125 .. 0.67
   2 ?    5.6   0.6   0.00092        17      17      61 ..     125     169 ..     123     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 9.8e-05
      DUF962  43 k.......................................lklllalfvvgyifafvGHfvfEkrkPAlfknp 76 
                 +                                         l +++  vg++    GH++f +   +lf++p
  CDO68772.1  50 TtlgiavsaitlvssallialdiffdniftsylafeipwlSILWILWISVGWTTLSEGHMIFQGITCSLFTQP 122
                 05555555555555555666667778888888888887643455566789********************998 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00092
      DUF962  17 npinrllHfigvplilltvlllllraklklllalfvvgyifafvG 61 
                 ++i+  +H i++++ + ++ll+l+++ l +++ +    y+  + +
  CDO68772.1 125 KEICEGIHPIAIIAFINFALLFLYTGVLMVVAFTSSSSYSSPWTS 169
                 578999*********************999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1236.09
//
Query:       CDO68773.1  [L=301]
Description: hypothetical protein BN946_scf184989.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-50  171.0   0.5    2.5e-33  115.5   0.4    2.3  2  RTA1      RTA1 like protein
  ------ inclusion threshold ------
       0.73    9.5   5.5        1.5    8.5   0.8    2.2  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.6e-18   1.4e-14       3      71 ..      71     137 ..      69     139 .. 0.95
   2 !  115.5   0.4   2.8e-37   2.5e-33      88     205 ..     138     273 ..     135     275 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.6e-18
        RTA1   3 lGcileviGYigRilsakntskaslgpfiiqivllllaPafiaaaiYmllgrlilllgeelsllrpkly 71 
                 l+++ e+iG++gR++s+ +  +++l+p+++qi+++++aP+ + aa++++lg++i+ +g+++s+l+ ++ 
  CDO68773.1  71 LAGVGEIIGWAGRLISSTD--PNDLNPYLMQITTTIIAPTPLIAANFVILGEIIRRVGPDYSRLSSSWS 137
                 68899**************..678*****************************************9995 PP

  == domain 2  score: 115.5 bits;  conditional E-value: 2.8e-37
        RTA1  88 aGGglaasasssae.aklGeniiiaGlalQvvvlvvFlllaldFllrvr.................kskkfkkfllalyaavlliliRsiyRvvElaeG 168
                 +GG+ a+ a ++ +    G +i++aG+a+Q+++lvv+++la +Fllr+                   +kk+k +++ l++a ++++iRsiyRv+El++G
  CDO68773.1 138 IGGAKASIAVQNGNdPGPGGHIMLAGVAFQLAALVVYVILASEFLLRFVydhpfkrrssmpsqaegLQKKTKLMIVGLAFAAVFLFIRSIYRVAELSNG 236
                 79999999988887799*************************************************6799***************************** PP

        RTA1 169 wdgylithEvyfyvLdallillavvllnvfhpgrlfk 205
                 w+g++it+Evyf v+d+++i+la++++n++hpg l++
  CDO68773.1 237 WGGKIITTEVYFNVFDGAMIVLAMYTMNALHPGLLLG 273
                 *********************************9886 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.8   0.00016       1.5       8      65 ..      38      96 ..      31     131 .. 0.60
   2 ?    3.2   0.3    0.0069        62       6      47 ..     169     224 ..     155     235 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00016
     DUF4131  8 vllalllllllllllllrr...rprrrvllllllllllallgfalrapqpnandlsqlles 65
                +  ++l+l+l+ +  +l+     ++r ++l+ +++l+ ++  + +  +  +++d ++l+++
  CDO68773.1 38 I--CILFLVLFGISTFLHAgqaIRSRLWWLFPTACLAGVGEIIGWAGRLISSTDPNDLNPY 96
                2..2222222222222223454666666666677766666667777777777666666655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0069
     DUF4131   6 alvllalllllllllllllrr..................rprrrvllllllllllallgf 47 
                 a++++ ++l+  +ll     +                   ++++ l++++l++++++l++
  CDO68773.1 169 AALVVYVILASEFLLR----FvydhpfkrrssmpsqaegLQKKTKLMIVGLAFAAVFLFI 224
                 2333333333333333....2555578777777777776444444666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2195.25
//
Query:       CDO68774.1  [L=116]
Description: hypothetical protein BN946_scf184989.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 913.66
//
Query:       CDO68775.1  [L=305]
Description: hypothetical protein BN946_scf184989.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2371.84
//
Query:       CDO68776.1  [L=167]
Description: hypothetical protein BN946_scf184989.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-06   26.1  11.3      1e-05   25.6  11.3    1.1  1  MARVEL        Membrane-associating domain
  ------ inclusion threshold ------
      0.048   13.0   3.1      0.059   12.8   3.1    1.1  1  TssN          Type VI secretion system, TssN
       0.16   11.2   3.4       0.18   11.0   3.4    1.1  1  Peptidase_U4  Sporulation factor SpoIIGA


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6  11.3   1.7e-09     1e-05      11     137 ..       6     128 ..       3     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.7e-09
      MARVEL  11 ilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdiscafe 109
                 +++++++ii+l+l a l++    ++ s++  + + ++v+++++l++ +++++++ +  +   ++  l++l++  ++++lw++ ++  a++++    af+
  CDO68776.1   6 GISVLCGIIVLSLGAHLTSLSEEYFESYYIFAALNIAVGGLTMLTIPVMVAIDFVR--TGAITSMVLVELVWLSILWVLWIATAAYTADQTSE---AFS 99 
                 5678999***********96667789999999999******************987..555778899**************************...666 PP

      MARVEL 110 .snqysasltvrcgqaqaavafgflavll 137
                  +   ++ l+++c++  a  afgfla+++
  CDO68776.1 100 aCDFIYPILNQVCNETRAMEAFGFLAWIV 128
                 999************************96 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.1   9.8e-06     0.059      35     132 ..       7     104 ..       2     119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.8e-06
        TssN  35 iyiLlaglvlalpgllgflknefvpygyillqilylllGilhlylllkkffkelkekk.ilfeilltlivillglvlfvlvfnllselqygvwaatsll 132
                 i +L+ ++vl+l + l  l+ e+    yi++ + + + G+  l+ +   ++ ++  +  i+  +l+ l+ + + +vl++    ++ +   + ++a  ++
  CDO68776.1   7 ISVLCGIIVLSLGAHLTSLSEEYFESYYIFAALNIAVGGLTMLT-IPVMVAIDFVRTGaITSMVLVELVWLSILWVLWIATAAYTADQTSEAFSACDFI 104
                 789*********************9******9999999999999.666666666666658888888899888888888888888877776664444443 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.4     3e-05      0.18      71     153 ..      14     110 ..       3     124 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3e-05
  Peptidase_U4  71 lmvliafgpkslk.eflkalllfylvsfllgGilfalsylllkskn.............llvlllgalvaylllkllvkiikkkkkkekeiyeveie 153
                   +++ +    +sl+ e+++ + +f ++++++gG+ ++ + ++++ +              l++l +  +++++   + +++ ++  +  ++iy++  +
    CDO68776.1  14 IVLSLGAHLTSLSeEYFESYYIFAALNIAVGGLTMLTIPVMVAIDFvrtgaitsmvlveLVWLSILWVLWIATAAYTADQTSEAFSACDFIYPILNQ 110
                   333223344443339*****************77777776744333455555555553322222222222222223345556666666666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1128.37
//
Query:       CDO68777.1  [L=215]
Description: hypothetical protein BN946_scf184989.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1516.31
//
Query:       CDO68778.1  [L=140]
Description: hypothetical protein BN946_scf184989.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   87.1   0.0    1.2e-24   87.0   0.0    1.1  1  Profilin  Profilin


Domain annotation for each model (and alignments):
>> Profilin  Profilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   6.6e-29   1.2e-24      37     127 .]      46     140 .]       7     140 .] 0.91

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 6.6e-29
                 GG--HHHHHHHHHHHH....STCHHHHH-EEETTEEEEEEEEETTEEEEEETTEEEEEEE-SSEEEEEEE-TTS-HHHHHHHHHHHHHHHHHCT- CS
    Profilin  37 fkvtpeevkaivkafk....dpsklqsnGvtiggekYlviraddesiygkkgkegvvivktkqalviavydegvqpgnankavekladyLisagy 127
                   ++++e kai++af+      ++++++G++++g+k+++i+ad++ iygkk ++g++ivktkqa+++a y+ +vq+ + +  ve+ladyL s gy
  CDO68778.1  46 ARLSDAECKAITDAFNspamHLDTIRTSGIRLAGQKFFTINADERHIYGKKAADGCIIVKTKQAVLVAEYTAPVQAPESTPIVENLADYLVSVGY 140
                 44799***********999889**********************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1043.21
//
Query:       CDO68779.1  [L=554]
Description: hypothetical protein BN946_scf184989.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-51  175.4   0.0    3.5e-35  121.8   0.0    2.2  2  DUF1365   Protein of unknown function (DUF1365)


Domain annotation for each model (and alignments):
>> DUF1365  Protein of unknown function (DUF1365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0     2e-39   3.5e-35       1     133 [.      41     199 ..      41     201 .. 0.87
   2 !   51.9   0.0   4.3e-18   7.8e-14     156     240 .]     200     312 ..     198     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 2e-39
     DUF1365   1 lyegsvrHaRllpv..khaFsYplllllldldeleel.......rlfsrnr..lallslrdedyl....dkke.......stslkekleell......a 71 
                 ++e++v+HaR+lp+  +haF+Yp+l +ll++++le++       +lf++    ++l++lr e yl    d  +       ++slkekl+++l      a
  CDO68779.1  41 ILENTVTHARVLPRpsAHAFTYPTLAFLLSVNALETHaldlgrgWLFGYGGtsWRLTGLRGEAYLlpddD--SgkigrvgARSLKEKLADVLrqygrdA 137
                 6789********9999****************88877779999988876544499**********98641..23577888889*********8877765 PP

     DUF1365  72 eeggeeeelgkvwlltmprvlGyv.fnPvsfyycydeekekleavvlEVsNTfgerhvYvlka 133
                 ++ +  +e g++w+ltmp+++G++ +nP+++y+cy ++ ++l  vvlE++NTfge+hv+vlk+
  CDO68779.1 138 KRVQAWAEDGDAWMLTMPSYIGFEgINPLTVYFCYTPH-GQLDWVVLEIHNTFGEKHVHVLKP 199
                 5566777889*************************999.99*******************975 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 4.3e-18
     DUF1365 156 gsYrlrlkdplke.......serlavrikllses.ke..................kltAtlkle.rkpltaasllrallryplmtlltvvrIlyqAlkL 227
                 g+Y +++++p  +       s+r+++ri+l+s+  ++                  kltA l+ + + plt  +ll+al+ryp++++l+++rIly+A  L
  CDO68779.1 200 GFYVVSVRAPPPPksvelasSPRPKIRIQLHSAGpDAsqkpadeadaleptlgplKLTAALSARrAVPLTCVALLAALARYPFALFLSFARILYHASIL 298
                 6899999988555777777668*********88854499**********************9985678******************************* PP

     DUF1365 228 h.lKrlpvyprpep 240
                 h +Krl+v+prp+p
  CDO68779.1 299 HyRKRLDVFPRPDP 312
                 ************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3987.61
//
Query:       CDO68780.1  [L=1313]
Description: hypothetical protein BN946_scf184989.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-24   85.5   0.2      3e-21   76.2   0.2    2.8  1  Membr_traf_MHD  Munc13 (mammalian uncoordinated) homology dom
    1.4e-10   41.4   0.0    5.4e-10   39.5   0.0    2.0  2  C2              C2 domain


Domain annotation for each model (and alignments):
>> Membr_traf_MHD  Munc13 (mammalian uncoordinated) homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.2   3.3e-25     3e-21       2     148 ..    1080    1193 ..    1079    1194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 3.3e-25
  Membr_traf_MHD    2 vlrPLmdyLdsnLsilaqalektvLkrvlkelWkvvlnalekllLPplsdakskkkssslwenanaakkleslsklllsmvreevsgfeksLt 94  
                      ++ PL+d++d+nLs l+++l+++    v+ ++Wk +ln +e ll Pplsd +s                              e     k+Lt
      CDO68780.1 1080 AILPLFDFFDANLSTLNTYLSEATKDMVMSRVWKEILNIIEGLLIPPLSDIQS------------------------------E----MKPLT 1138
                      89***********************************************9773..............................3....58*** PP

  Membr_traf_MHD   95 pkevevleaaLdtlkdfFhagGeGl.kkeaLkseelqsLllalslYdqstdeLik 148 
                       kev++++++L++l d+F+agGeG+ ++eaL++++++  l +  +Yd +td L++
      CDO68780.1 1139 DKEVDIVFKWLKFLRDYFYAGGEGPiSLEALQNQKYRDVLSIRLYYDWHTDALME 1193
                      ************************85799************************87 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0     6e-14   5.4e-10       3      90 ..     860     948 ..     859     963 .. 0.88
   2 ?   -3.6   0.0       1.6   1.4e+04      20      44 ..    1006    1028 ..     994    1030 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 6e-14
                 EEEEEEEEESSSSSST..TSSCEEEEEEEE.ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2   3 levtvieAknLpnkdk..kgssdpyvkvsl.dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst 90 
                 ++v++  A++L + +   + + d++v++s  +g++ akTr+i  slnP+W+e+f ++v++     + ++V d+  ++k+d +G++ + l+ 
  CDO68780.1 860 FTVKIALAEGLVPLESspSAKLDTFVTLSDeQGNRLAKTRTIYESLNPRWDESFDLSVDK--PLWIMISVRDRALVGKHDTVGRAYLCLDP 948
                 578999999995554446888***************************************..89*********************998876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
                  SSCEEEEEEEEECEEEEEE-SCSSS CS
          C2   20 gssdpyvkvsldgkqkakTrvikns 44  
                   +++p+++ +l + ++ kT  ik++
  CDO68780.1 1006 DKMSPFIRQCL-SRTVLKTL-IKST 1028
                  46899999999.99999998.5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.50
# Mc/sec: 7938.92
//
Query:       CDO68781.1  [L=454]
Description: hypothetical protein BN946_scf184989.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3070.55
//
Query:       CDO68782.1  [L=551]
Description: hypothetical protein BN946_scf184989.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-26   93.1   1.3      2e-26   92.3   1.3    1.3  1  Mem_trans     Membrane transport protein
  ------ inclusion threshold ------
       0.22   11.3   1.5       0.49   10.2   1.5    1.5  1  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   1.3   2.2e-30     2e-26       3     381 ..      13     538 ..      11     544 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2.2e-30
   Mem_trans   3 leavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfsl 101
                 ++++++++ + + gY+ vk   +f+p++ +g + + +++a+P+lif++++ + +  ++  +  ++ +  + +++++++g+l+  i+  + +  + ++++
  CDO68782.1  13 VMPLIKTFAALICGYVLVKL-DMFPPAASRGASILSMNVALPALIFANVVPSFTQSNVSALGPVILIASIYMFSGFVMGMLIREICYVPRNFWQGIIIM 110
                 789*****************.****************************************************************************** PP

   Mem_trans 102 stlpNtlvlgipllkalyge..........ygvslmvqvvvlqciiiytlll........................................flfeyrg 150
                 + ++N ++l+ ++++ + ++           gvs++++++v + ++ ++ +                                         + + +++
  CDO68782.1 111 TGMSNWGNLPNAIVQTVTQQppfnpatdpqLGVSYVSIFTVCYHVVFWIGGGaqslswdylpgvpqgedaerrlswkekpigsliaryilrkRAISPPE 209
                 *****************************************999999999999******************************9998433333333333 PP

   Mem_trans 151 aklliseefp.dtaasivsikvdsdvvsldgrk....pleteaeikedgklhvtvrksnasrsdivs....sstprpsnltnaeiyslq.......... 230
                 ++++       d+ asi+++ ++ +v +l +       +  ++e + ++ +++t+r+s  s  + +     sst +ps l        +          
  CDO68782.1 210 MSEK-----LkDEEASIDEQDKKTSVEVLAAPVasipKIVISDELDSESDIQLTRRSSRVSAVSAFRsrnqSSTAPPSPL--------Ritvpaspiri 295
                 3333.....3355556655555555555544432022456799999***********99999999986666555555544........24444456689 PP

   Mem_trans 231 ..............................................................mtrlilimvlrklirnPntyssllglilslvsfkwnv 267
                                                                                  l + +   +++++P t+++ ++l ++lv +++ +
  CDO68782.1 296 sipassirttapsspmagpaqrsplrttfvatptpvrstrsvgssiqpkdvrqkehpllkkaQHCLATVFRPFRAFLQPVTVAIAISLPIALVLPLKAL 394
                 99**********************************************************9855555667789*************************9 PP

   Mem_trans 268 imp..................kiiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfa....lavRlilgPlvmlvavlavgLrgslllvaiv 344
                 +                    ++++++ + +   ++p+al+ lG++ a+     ++      +a    +a+++i++P++++++v ++       +++i+
  CDO68782.1 395 FVDvstqggpswhgpdgrpplAFVMDTAQFIDTIAVPLALILLGASFARITVPHPLSRLPI-MAmllvAAAKMIVIPVMGVLMVQVMV-----HKGLIP 487
                 998********************************************97654444333222.2245669***************9999.....899999 PP

   Mem_trans 345 q................aAlPqgivlfviAkeynvherelstllifgmlialp 381
                 q                aA+ q+iv+   A   nv+  + ++  ++++l++++
  CDO68782.1 488 QdakaekfvamllsgtpAAINQMIVSSLHAPDGNVD--TIAAFYLVQYLFMII 538
                 9999999999***88888888888887777777776..555666666666665 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.5   5.4e-05      0.49      41      97 ..     425     483 ..     407     516 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.4e-05
  Trp_oprn_chp  41 wapaltalAlvllAaavAvlavrglgrr..vvgvllalagagaavaalslltdpadaar 97 
                   + + +++lAl+ll a  A + v   + r  ++++ll++a+ +++++++ +l+ +  +++
    CDO68782.1 425 IDTIAVPLALILLGASFARITVPHPLSRlpIMAMLLVAAAKMIVIPVMGVLMVQVMVHK 483
                   57889*************99998766543479999999999999999999987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3650.75
//
Query:       CDO68783.1  [L=170]
Description: hypothetical protein BN946_scf184989.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-08   33.2   0.0    7.6e-08   32.7   0.0    1.3  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
     0.0001   22.5   0.1    0.00013   22.2   0.1    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
       0.01   14.9   0.0      0.015   14.4   0.0    1.2  1  ECSIT            Evolutionarily conserved signalling intermed


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.3e-11   7.6e-08       4     138 ..      16     163 ..      13     168 .. 0.58

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.3e-11
                      EEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEE.....CSESTSSS......TTTEEEEECCCS.........SEEEEEEEEEETTTTEEEE CS
  Polyketide_cyc2   4 vtvsvviaappekVwalvsdfenwprWhpevarve.....leggggpa......rgvegtvrvggr.........gtvreelvevdpegrllsy 77 
                      v+v  +i+ap ekVw ++ df+++ +W p+v+  +            +      +g+   ++v              + e+++ v+pe ++l++
       CDO68783.1  16 VSVFCEIDAPIEKVWTVLLDFPKYKEWNPFVQVITdknkkP------LedqtpgEGKYLLMQVHIPptmddsistTSAFEQITSVQPELHRLAW 103
                      555569**************************997444441......3333322233233333333556666665559999999***9****** PP

                      EEE.SSS-TSEEEE.EEEEECC.ET.EEEEEEEEEEE..E--TT--HHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  78 rivkpvpvanyvat.wtvtpdg.gg.trvtwtgefda..gplggpfekpaaakavkgdleagLerL 138
                      +    +p    +a+ w+   +  +g t  + +  f +  + l ++f    + + + + +e+  ++L
       CDO68783.1 104 KNL--LPSWFIRAErWQALRTNeAGkTVYETREVFGGigAYLIKWF----LGAKLVKSFEEMAKGL 163
                      984..44444433334444433133333333333332223344444....4455555555555555 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.1e-08   0.00013       1      36 [.      22      55 ..      22     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaes 36
                    ++ap+++v+ ++ d+ +y+e++p+++  ++++++ +
      CDO68783.1 22 IDAPIEKVWTVLLDFPKYKEWNPFVQ--VITDKNKK 55
                    79*********************988..44444443 PP

>> ECSIT  Evolutionarily conserved signalling intermediate in Toll pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.6e-06     0.015     138     172 ..      12      46 ..       3      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-06
       ECSIT 138 eallvqiFGrkshplrkyvrlmyWlpkfknlnPfp 172
                  al+v +F +   p++k + + + +pk+k+ nPf 
  CDO68783.1  12 GALVVSVFCEIDAPIEKVWTVLLDFPKYKEWNPFV 46 
                 6899*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1250.31
//
Query:       CDO68784.1  [L=826]
Description: hypothetical protein BN946_scf184989.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-05   23.0   0.0    8.2e-05   23.0   0.0    2.9  3  BAG       BAG domain
  ------ inclusion threshold ------
        3.4    8.0   7.4        9.5    6.5   6.4    2.2  2  NifQ      NifQ


Domain annotation for each model (and alignments):
>> BAG  BAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   2.8         2   1.8e+04      55      63 ..     176     184 ..     141     192 .. 0.60
   2 ?   -5.4   4.3         2   1.8e+04      63      70 ..     184     191 ..     168     242 .. 0.62
   3 !   23.0   0.0   9.2e-09   8.2e-05      31      73 ..     498     541 ..     469     543 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2
                 HHHHHHHHH CS
         BAG  55 RekRKeavk 63 
                 Re+R++   
  CDO68784.1 176 RERRRQEEE 184
                 445555555 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 2
                 HHHHHHHH CS
         BAG  63 kevqkllk 70 
                  ++  +l+
  CDO68784.1 184 ERIRRILE 191
                 44443333 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 9.2e-09
                 H.HHHHHHHHHHHHHTCEESTHHHHHHHHHHHHHHHHHHHHHHH CS
         BAG  31 y.lsElLlklLlkLDsieiegdeeaRekRKeavkevqkllkklD 73 
                 + ++E L + L +LD+ie  gd+ +R++R+e+ + v+   +++D
  CDO68784.1 498 HgYEEELNRILSALDAIESRGDAGVRAARRELARMVEREAERVD 541
                 3489**********************************999999 PP

>> NifQ  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.4    0.0011       9.5      17      95 ..     140     220 ..     131     235 .. 0.82
   2 ?   -0.1   0.3      0.12   1.1e+03      44      76 ..     210     242 ..     202     250 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
        NifQ  17 aealGlsaaelaeLlerlf.pgaeaaleaaalaeeleeeraeeeedlralLlehaseeaee.erwlaaivarrsleedhLW 95 
                 + a Gl++++ ++Lle+    ++ +++++ +l e ++e r++eee++r++L e+++++++e  ++l +   rr++ee+ L 
  CDO68784.1 140 NGAYGLTPRQQRALLEEQQrRELLEEQRRRELLELERERRRQEEERIRRILEEERKRDEAErRKILEEERKRRAMEEEKLR 220
                 5678**********99887355666668888899999999**************999998835589998999999988885 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
        NifQ  44 aaalaeeleeeraeeeedlralLlehaseeaee 76 
                 + +++ee++  ra eee+lr+ +le+++++ e+
  CDO68784.1 210 KRRAMEEEKLRRAIEEEKLRRAMLEEEAARRER 242
                 455666777778888888888777776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2112  (0.117798); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.51
# Mc/sec: 4842.04
//
Query:       CDO68785.1  [L=394]
Description: hypothetical protein BN946_scf184989.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-113  379.1   0.6   2.5e-113  378.9   0.6    1.0  1  RNA_pol_I_A49  A49-like RNA polymerase I associated factor
  ------ inclusion threshold ------
      0.081   12.9   0.0       0.15   12.0   0.0    1.4  1  DUF2490        Protein of unknown function (DUF2490)


Domain annotation for each model (and alignments):
>> RNA_pol_I_A49  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.9   0.6  2.8e-117  2.5e-113       1     384 [.      16     391 ..      16     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: 378.9 bits;  conditional E-value: 2.8e-117
                    -TT-EEEEEE........E-----EEEEEE-SSEEEEEE--HHHHHHE...EEEEEEEETTTTEEEEEEE-EEEEEEEESSTTTXXXXXX..XXXX CS
  RNA_pol_I_A49   1 peslkFslyk..ekekskkrkkselllvgeterleYvgknegegssaenllrylvGvydketgelelypaplftlrpsvkakkseseeeeedeskt 94 
                    p+s+ F++y    ++ks + + + +l++ge e++e+  ++   +s  +   +y++Gv+dk+t++ +l+p+pl+ l+++vka+k++ + e   ++++
     CDO68785.1  16 PKSTAFKCYVqkGADKSAPFELQPTLIAGEAETVEFFTADGPLQSTGC---SYMIGVHDKRTNTTTLRPVPLHILTRQVKALKNLRPIEV--STEE 106
                    789******96566667777999****************999999888...*************************************99..999* PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49  95 yaekraaLgeaFGtkKakkalrsrernkvdsealeevedailesikeataslptkeelqaavassrplPpanldAtepedVYplsdlissaeleal 190
                    ++++r++Lge+FGtkKak+a+r+rern+vd +a+++v+++++++i ++t+slpt ++++aa++ssr++Pp+n+dA++p++VY l+d+i++ae++al
     CDO68785.1 107 RMQQRNNLGETFGTKKAKAAIRARERNRVDIDAMKNVAGHLQDTIMQNTESLPTADQAKAAADSSRLIPPYNADAQSPDEVYGLHDIIPEAEFNAL 202
                    ************************************************************************************************ PP

                    XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX.XXX....XXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 191 evkalekaadkeervellpykskssfvakrlekllqkseeaakkklrllyYlslLlkfysarrsvrkrgtekeklkeklesvpeiiidkllrkFte 286
                    +v+ ++ a++  +r++llp  ++s +   +l+ + ++ + a+k+ l+l+yY+s +++f++++r v +    k+ l+++l+svp+i++d+l+++Fte
     CDO68785.1 203 PVSTFKAAKSYHDRIALLPF-NRSDWLKLQLKLIYSAPK-ANKTDLKLVYYISTMMAFHKNSRNVGD----KDALQQRLSSVPPIVVDSLISRFTE 292
                    *******************9.***************888.*************************99....99*********************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 287 essnnkgkskrlskshkdkLlayilalaLhldnfsvdltdLaedLklkpkklnelfkelGckiskltaaeaealglek...kekiavLklPLkfpk 379
                     ++++++ +  +++++++ Ll+y++al+L +++++ dl+++a+dL+++p+k+ +lfk+lGc+i+kl+  e+++ gl++   ++k+avLk+PL+fpk
     CDO68785.1 293 VERSTNKPK--MTPQTETMLLTYMFALILRVEDYAADLETIAHDLSMPPTKVGNLFKSLGCTIKKLSPNELKERGLPDsgsETKRAVLKVPLEFPK 386
                    ***988887..************************************************************************************* PP

                    XXXXX CS
  RNA_pol_I_A49 380 vrrgr 384
                     r +r
     CDO68785.1 387 NRIKR 391
                    99876 PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.6e-05      0.15      76     140 ..      89     154 ..      58     175 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
     DUF2490  76 qqflitl.kklgrftlshRfRlEqR......fragkdsvalRlRyklrleiplkkipkkrltlyasdElfln 140
                  q+  ++ k+l+ +++s  +R++qR      f ++k + a+R R + r++i+      k++   ++d ++ n
  CDO68785.1  89 RQV--KAlKNLRPIEVSTEERMQQRnnlgetFGTKKAKAAIRARERNRVDIDA----MKNVAGHLQDTIMQN 154
                 333..33377779*****************98899*************99988....566666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2666.03
//
Query:       CDO68786.1  [L=793]
Description: hypothetical protein BN946_scf184989.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-19   69.8  10.9    5.7e-19   68.1  10.9    2.0  1  SRI            SRI (Set2 Rpb1 interacting) domain
    7.4e-18   65.5   0.2    7.4e-18   65.5   0.2    3.5  2  SET            SET domain
  ------ inclusion threshold ------
      0.032   14.2   0.1       0.19   11.8   0.1    2.5  1  Med26          TFIIS helical bundle-like domain
      0.051   13.2   0.1        0.1   12.2   0.1    1.5  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.42   11.3   5.5        2.3    9.0   5.5    2.4  1  ACC_epsilon    Acyl-CoA carboxylase epsilon subunit


Domain annotation for each model (and alignments):
>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1  10.9   1.6e-22   5.7e-19       2      84 ..     582     665 ..     581     666 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.6e-22
         SRI   2 kkqekkfkkelakvVvnvlnkYrkklkkedfKklakeltkklvekElkkdksr..dppkelseekkkkikefvkeYmekfgakyk 84 
                 +++ek++ k++  vVv++++kY+++++++ fKk+akelt+++++kE k ++ +   ++++lseek++kik+f+keY++k+++k +
  CDO68786.1 582 ANKEKRLLKLIGAVVVRCMSKYKDQMDHDLFKKYAKELTQTIADKEKKSSS-YkeGRLDSLSEEKTAKIKKFSKEYIAKVLRKLE 665
                 5799******************************************55544.4468999**********************9976 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.2   2.1e-21   7.4e-18       1     169 []     136     242 ..     136     242 .. 0.87
   2 ?   -2.1   4.8       1.2   4.5e+03      57      85 ..     565     593 ..     327     734 .. 0.70

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 2.1e-21
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHX CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskae 90 
                 G+G++A  dIpk++fi ey+ +  ++++    k++ +         y+++l+                                               
  CDO68786.1 136 GFGLRAAADIPKDAFIYEYVgD--VVSQPSFLKRMRQyaeegirhFYFMMLQ----------------------------------------------- 185
                 9*******************64..7777777777777788999999999999............................................... PP

                 TTTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  91 sdlnaskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                                    +id  a+k g+      rf NHsC+pNc++    v +  r+++fA r+Ik++eElt++Y+
  CDO68786.1 186 ----------------KDEFID--ATKRGGIG----RFANHSCNPNCYVAKWTVGSHVRMGIFANRPIKQNEELTFNYN 242
                 ................233499..77999999....***********8877777************************7 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 HHHTTSSHHHHHHHHHHHHHHHHHHTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  57 kasastllqklakdqkqaekedtdaalka 85 
                 ++s+s + +kl+k++k+a ke++  +l  
  CDO68786.1 565 ASSSSSKRKKLTKEEKEANKEKRLLKLIG 593
                 33334444444444444444444433333 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.3e-05      0.19      12      50 ..     393     429 ..     369     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
                 ..HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHH CS
       Med26  12 ttetLkstgIGkvVnalrkhkhetaevktlAksLvekWk 50 
                  +++ + +++ ++V+  +  ++e++ v+ lAk+L+ +W 
  CDO68786.1 393 QRNKVEDSKVNVPVKLCA--ESENEAVSALAKKLLAQWE 429
                 566888999999999995..467***************7 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.9e-05       0.1       5      46 ..     479     519 ..     477     533 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                    EEEEEEEE...TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCC CS
  Peptidase_S15   5 LavdiyrP.etkskeklPvlltrtPYgkndelasdkalaleel 46 
                    L  ++ rP   k ke +P++ltrtPY+ +  la+++a a+ ++
     CDO68786.1 479 LPSSVQRPkSPKYKESAPIVLTRTPYEDT--LARRAAEARRQQ 519
                    5667889988899**************43..333333333333 PP

>> ACC_epsilon  Acyl-CoA carboxylase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.5   0.00063       2.3      13      54 ..     519     559 ..     509     565 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00063
  ACC_epsilon  13 eELAALtaVLaaraaaaaaaaaepapag..saWarperrlrrpl 54 
                  +++AA++a+ aa+a+++a+ ++++++++   +W +      +pl
   CDO68786.1 519 QDVAAIIAAAAAAAQESAKKPEPEPEPPrnLGWDDNH---PYPL 559
                  689******9999999888777777777789998843...4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1608  (0.0896871); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 5401.34
//
Query:       CDO68787.1  [L=239]
Description: hypothetical protein BN946_scf184989.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00019   20.9   0.0    0.00028   20.3   0.0    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.025   13.9   0.0      0.039   13.3   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.035   13.7   0.0      0.052   13.1   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
      0.046   13.0   0.0      0.086   12.1   0.0    1.4  2  Pkinase_Tyr     Protein tyrosine kinase
      0.075   11.8   0.0      0.096   11.4   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.9e-08   0.00028     109     150 ..     147     189 ..     138     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.9e-08
                 HHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSS CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakeles 150
                 e++e lH++  +H Dl  +N+++  ++  + ++DF+ a ++ +
  CDO68787.1 147 EAVEALHARDYVHEDLRYQNVILWnSNSTFALIDFDWAGKVGK 189
                 89******************999856777*********99876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.039     130     169 ..     148     184 ..     143     216 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                 +++ lh+++  H dl  +n+ l + +    +++liD+d a
  CDO68787.1 148 AVEALHARDYVHEDLRYQNVILWNSN---STFALIDFDWA 184
                 6889***********99997776665...6*******976 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.5e-05     0.052     148     175 ..     158     185 ..     146     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
                     E-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 148 cHnDlqegNillnkeekklvlIDFEYag 175
                      H Dl ++N++l +++++  lIDF +ag
      CDO68787.1 158 VHEDLRYQNVILWNSNSTFALIDFDWAG 185
                     6************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2   4.1e+03     102     122 ..      57      77 ..      51      90 .. 0.70
   2 ?   12.1   0.0   2.4e-05     0.086     113     151 ..     146     185 ..     123     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLesk 122
                   ++ +sfa+  A+ ++yL+ k
   CDO68787.1  57 GHEHVSFATTSADQCAYLAVK 77 
                  566777888888888888755 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.4e-05
                  HHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHE CS
  Pkinase_Tyr 113 AkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLar 151
                   +++e L+++++vH dl+ +Nv+l + n++  + Df  a 
   CDO68787.1 146 HEAVEALHARDYVHEDLRYQNVILWNsNSTFALIDFDWAG 185
                  568899***************9885526688888886665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05     0.096     319     364 ..     149     189 ..     141     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
  Pkinase_fungal 319 hrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsd 364
                      + L+    ++H D  ++N+++     +++ +  LiD+D+a ++++
      CDO68787.1 149 VEALH-ARDYVHEDLRYQNVILW----NSNSTFALIDFDWAGKVGK 189
                     46789.999**************....567899********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1720.81
//
Query:       CDO68788.1  [L=510]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-46  157.1   0.0      8e-46  156.7   0.0    1.1  1  GMC_oxred_N  GMC oxidoreductase
    1.9e-36  125.7   0.1    4.5e-36  124.5   0.1    1.7  1  GMC_oxred_C  GMC oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   0.0     9e-50     8e-46      86     295 ..       1     219 [.       1     220 [. 0.93

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 9e-50
  GMC_oxred_N  86 vNwsayiRtpaadldeWeeeaglegwssdevlpafkkvetaqale.....sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk.hqc 177
                  +N+++y R   +d+d We++ g+ gw+++ ++++f k+e++   +      + hg++g +   +++    p+++ +l+a e+lG+pv++d+n +    
   CDO68788.1   1 MNAMIYHRCDPSDFDAWERQ-GAVGWGYESLRKYFLKAEKYIPRQphsadPKNHGTNGMVA--HSHVPIAPICETILQATENLGIPVTDDFNTCeGTI 95 
                  8*******************.******************7754446687778999999765..59999**************************7788 PP

  GMC_oxred_N 178 Gvcllgv.tcrtgarqstarawLrpal.erpnleiltgakaekiil...egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGk 270
                  G + +   + ++++r+sta+a+L   + +rpnl++   +++e+i++    +  +ravG+++s+  ++ ++ v a+kev+v+aGa+ sPqlLq+SG+G+
   CDO68788.1  96 GAGPFAAaVDEKHERSSTATAYLTSDVlRRPNLTVAVTVMTERILFaqtPEGAPRAVGIQVSSRRSGPRFAVGASKEVIVCAGAIGSPQLLQLSGIGD 193
                  9*9999999**************86655******************8885579**************999999************************* PP

  GMC_oxred_N 271 aehLkevgvdvvvdlp.vGknLqdHp 295
                   ehL ++++ +v + p vG+nL dH+
   CDO68788.1 194 SEHLSKLNIPLVREVPaVGRNLLDHV 219
                  *************************7 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.1     5e-40   4.5e-36       1     144 []     330     501 ..     330     501 .. 0.93

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 5e-40
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG............................TTEECCEECCCTTTTS.HCH CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal............................dvleeeltpgaaeetsdaav 70 
                  P s+G+v + s+dp+ +p+id nyl d++d+++lv+a++ + +++++++l                            ++ ++ ++  + + +    +
   CDO68788.1 330 PASSGTVLIMSADPYEHPVIDANYLADENDVKMLVKAVRFLLALARTPPLsdalefrestkkgdmfwpgdadpdkvrmRRSRAITKSLNGPLPTIHPQ 427
                  789*********************************************88888999999999999999999999999866666666666666777788 PP

                  HCHHCHHCHHHHH-EE-S--B-TT-B-STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  71 esdealekfvkeavltsaHplGtcrMGadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                   +de++ +f+++  ++s+Hp++++rMGadpk+s+VD++lrvh v+ LrV+D+SvfP++++++p ++++a+Aeka
   CDO68788.1 428 LTDEDIKEFIRDYGQSSWHPTSSVRMGADPKTSAVDPQLRVHRVKALRVIDSSVFPDQVSGHPCAVVVAMAEKA 501
                  88889*******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3639.43
//
Query:       CDO68789.1  [L=314]
Description: hypothetical protein BN946_scf184989.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2193.20
//
Query:       CDO68790.1  [L=1340]
Description: hypothetical protein BN946_scf184989.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   86.9   3.9    4.2e-24   85.2   2.4    2.7  2  BP28CT    BP28CT (NUC211) domain
    0.00099   19.2   3.5     0.0054   16.9   0.3    4.1  3  HEAT      HEAT repeat
     0.0092   15.1   2.3      0.038   13.1   0.4    2.8  2  IFRD      Interferon-related developmental regulator (IFRD)
  ------ inclusion threshold ------
       0.13   12.4   2.6         15    5.8   0.1    4.1  3  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> BP28CT  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.45     2e+03      90     127 ..     941     978 ..     931    1013 .. 0.72
   2 !   85.2   2.4   9.5e-28   4.2e-24       4     156 ..    1081    1208 ..    1078    1210 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.45
                 HHHH--------TTHHHHHHHHHHHHH---------HH CS
      BP28CT  90 nklaekLkslftsYasyllenavelLkalnekseeske 127
                  ++++kL   +++Y + +++++v++ +++  +s++++ 
  CDO68790.1 941 LSFSSKLGPRMIPYLKEIVKTCVACARKAVVGSTDTSP 978
                 578889999999**********9998777555444444 PP

  == domain 2  score: 85.2 bits;  conditional E-value: 9.5e-28
                  HHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH...HHTSTT-----HHHHHHHHHHHHH------- CS
      BP28CT    4 knlkelfkfflkaldlRreqaskkeeeeidevEesvieafvalvlKLneatFrPlFlklveWaeeesselskkdskeRlitfykllnklaekLkslf 100 
                  + l+elfk fl++++l         +++  evE sv++af+++v+KLne++FrP+F k+++Wa   +     k++++R+i+f +l+ +l++ +k l+
  CDO68790.1 1081 ETLRELFKAFLSMFELCA-------DARNLEVERSVTTAFIEVVVKLNETAFRPIFRKMFDWA--FA-----KSHSNRRIVFCHLYSALLDFFKALM 1163
                  67889***********92.......256679********************************..33.....5689********************* PP

                  -TTHHHHHHHHHHHHH---------HH...........HHHHHHHHHHHHHHHHGG CS
      BP28CT  101 tsYasyllenavelLkalnekseeskekkkkkeekkveLlrlvlstLtkcflhDqd 156 
                  ++Y++  +++++e+++ ++++s+e+ e           L+ + ++tL+k+++ D+d
  CDO68790.1 1164 VPYMTFAWQSLAEAIRGYASASAEDGE-----------LWLALIQTLAKSMAADED 1208
                  ******************988888888...........****************98 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   1.2e-06    0.0054       1      28 [.     172     199 ..     172     202 .. 0.91
   2 ?   -0.6   0.1      0.52   2.3e+03       5      23 ..    1268    1285 ..    1265    1290 .. 0.79
   3 ?   -2.9   0.0       2.9   1.3e+04       5      19 ..    1308    1323 ..    1307    1323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 +lP++l +l+++++ VReaA+++++ ++
  CDO68790.1 172 VLPAMLIMLQSQDATVREAAIRCIAVVI 199
                 69**********************8765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.52
                  HHHHHT-SSHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAaka 23  
                  l++  ++++++VR  ++ +
  CDO68790.1 1268 LMH-SRSEDARVRLLSLTC 1285
                  555.589******998877 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
                  HHHHHT-SSHHH.HHH CS
        HEAT    5 llkllsDpspeV.Rea 19  
                  + ++ +D++  V Rea
  CDO68790.1 1308 IAEAVEDENDLVvREA 1323
                  6788899999954886 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   8.5e-06     0.038     175     261 ..     130     210 ..      95     270 .. 0.73
   2 ?   -0.1   0.1     0.089     4e+02     123     197 ..     451     528 ..     356     540 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.5e-06
        IFRD 175 fssdgqsieaadsaskalvtaals.awglLltllpssklnkkleedleealealvelLdssdvevriAAGeaiALlfElsreedeefe 261
                  ss+ q+++a ++++  +  aal+ a ++L  ++      ++   d++++l+a+  +L+s+d  vr AA + iA++  +s+  ++e  
  CDO68790.1 130 ASSAAQNKSADEQSH--IQYAALRhAGAFLEAHV-----VTQRTVDFQTVLPAMLIMLQSQDATVREAAIRCIAVVIRISHAKEAEAV 210
                 344444444433333..66666651667888888.....22222334788**************************999988766654 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.089
        IFRD 123 eelkpvLkriikdssvslsakaaaieaLgllt.fvggadeeeieelmeflleifssdgqsieaadsaska....lvtaal 197
                 ++++p  kr+   +s  +++  + i+ L++l+ ++g+ +    +el  +lle++++ +++++  d a+      l+ +a+
  CDO68790.1 451 DASQPASKRARVEKS-ATAIQIEEISLLAILAeVLGSIKLPGSLELISCLLETLHKITHNVAP-DTADRRyveqLIMSAV 528
                 445555566666666.77777788888885551556667889999999999999999998865.4444223455555555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0034        15      13      36 ..     172     195 ..     172     197 .. 0.91
   2 ?    3.5   0.1     0.018        81      13      40 ..     878     905 ..     876     906 .. 0.89
   3 ?   -2.0   0.0      0.99   4.4e+03      13      23 ..     982     992 ..     980     995 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0034
                 HHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAawAL 36 
                 ++p+ + +L+s+d +v+e+A +++
  CDO68790.1 172 VLPAMLIMLQSQDATVREAAIRCI 195
                 6899999*************9998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.018
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 +v++  + Ls  +e++ ++A++AL+ ++
  CDO68790.1 878 IVDRIRAILSAASESLARPALRALATIS 905
                 68888999****************9877 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.99
                 HHHHHHHHTTT CS
         Arm  13 avppLvrLLss 23 
                 av++L +LL+s
  CDO68790.1 982 AVQVLRNLLTS 992
                 68999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 8740.01
//
Query:       CDO68791.1  [L=638]
Description: hypothetical protein BN946_scf184989.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-10   40.5   4.1      3e-10   40.5   4.1    3.2  3  U3snoRNP10  U3 small nucleolar RNA-associated protein 10
  ------ inclusion threshold ------
        0.2   11.9   8.1         25    5.1   0.4    3.9  3  TetR_C_31   Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.43   3.8e+03      31      45 ..       8      22 ..       4     101 .. 0.77
   2 !   40.5   4.1   3.3e-14     3e-10       3     116 .]     238     362 ..     236     362 .. 0.85
   3 ?   -0.1   0.0      0.13   1.1e+03      40      53 ..     425     438 ..     379     506 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.43
                HHHHTT-S-HHHHHH CS
  U3snoRNP10 31 vLaskvpLsdkvlea 45
                +La +v+L++++l+ 
  CDO68791.1  8 QLAKSVSLNANLLNE 22
                788888888888875 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 3.3e-14
                 HHHHHHHHHHHT........-TT..-HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHH--GGGHHHHHHHHHHHH..HT-SS-S--HHHHHHHTTS CS
  U3snoRNP10   3 tallpvllegLl........sss..sadlqaaaymilsvLaskvpLsdkvleallesilknlskelaksallcllvla..qsqsakllpkkvlkallkl 89 
                 + llp++le L+        +++   ++  +++y  l+ +++k++L+ k++ ++l ++  + +  + k+ + +l+ +   q+q  + +pk+v++a+l++
  CDO68791.1 238 AVLLPAVLEPLQtaskaetkTKPalLQETILGSYLALAAISQKTNLTTKAVASILVAVTDCAARVSPKQLIRTLVSITapQDQ-LERVPKSVIEAILAI 335
                 679******999888888752335678*********************************97766666667777777745555.677************ PP

                 TTHHHHHHHHTTTS--HHHHHHHHHHH CS
  U3snoRNP10  90 psladvLeelskeyrvdkfllallksl 116
                 p ++++L ++  +  ++k+l++ll++l
  CDO68791.1 336 PHVESELIDAVAWVGAEKLLVPLLNHL 362
                 ***********************9875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHH CS
  U3snoRNP10  40 dkvleallesilkn 53 
                 +k++ea+  +i+++
  CDO68791.1 425 PKAVEAASSAIIAD 438
                 33344444444443 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0035        31      50     104 ..     190     244 ..     164     247 .. 0.77
   2 ?    4.3   0.2    0.0052        47      37      76 ..     410     451 ..     408     477 .. 0.78
   3 ?    5.1   0.4    0.0028        25      40     104 ..     486     549 ..     478     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHSGTS-HHHHHHHHHHHH CS
   TetR_C_31  50 alrealaallaalGlpdpeeaarllvaaldGllldrLagpaadpraevrellral 104
                 ++++ ++ +l a+ +++ +   r+l+a+ +G+ll+ +a +++ ++   + ll a+
  CDO68791.1 190 EFARFVTSILPAVLSHHSAGMHRALIAFHTGVLLEYIAASRTLDENTMAVLLPAV 244
                 5777888899999997788899***************998333345555555555 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0052
                 SCHHHHHHHHHHHHHHHHHHHHHHHHCSS-HH..HHHHHHHH CS
   TetR_C_31  37 rPeLraalarlrralrealaallaalGlpdpe..eaarllva 76 
                  P+Lr++l++l+++   a++a+  a+ ++d +  +a+++lv+
  CDO68791.1 410 MPALRRVLSHLYQRHPKAVEAASSAIIADDKDkaDAVEQLVL 451
                 59******************9999998854441145555554 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHHHHHHHHCS.S-HHHHHHHHHHHHHHHHHHHHHSGTS-HHHHHHHHHHHH CS
   TetR_C_31  40 LraalarlrralrealaallaalGl.pdpeeaarllvaaldGllldrLagpaadpraevrellral 104
                 +r +l+ + +a+++al+++l  + + p  +  +r+ + +l    l +La +++d ++ +rel r++
  CDO68791.1 486 VRVLLTPTPTAYLDALVQALHGSSAkPSRD-VIRAHFSFLLSHFLPALAAQEED-AQKLRELTRRI 549
                 5778999999***********999977555.99***************999444.58888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3992.07
//
Query:       CDO68792.1  [L=1073]
Description: hypothetical protein BN946_scf184989.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-37  127.4   0.0    8.9e-37  126.9   0.0    1.2  1  Pkinase      Protein kinase domain
      4e-28   98.4   0.0    5.9e-28   97.9   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    1.3e-06   27.9   0.0    2.1e-06   27.2   0.0    1.2  1  Kinase-like  Kinase-like
    1.4e-05   25.3   0.0    3.5e-05   24.1   0.0    1.7  1  PBD          P21-Rho-binding domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0     2e-40   8.9e-37       2     264 .]     773    1033 ..     772    1054 .. 0.86

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 2e-40
                  EEEEEEEEESSEEEEEEE........ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHH CS
     Pkinase    2 ekleklGeGsfGkVykav........eketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladl 88  
                   +l+++ eG++G+Vy a+        e++++  vA+K +      + k ++++rE++++k ++h +i+++ e + +  +d+l+++++++e  +lad+
  CDO68792.1  773 ADLREIAEGESGSVYAARvlatshslEQHSSTFVAIKNVPILPSGSPKIDDLRRELTLMKGVSHVHILTMDELYVDlvEDSLWICMDLME-RSLADI 868 
                  56789999******9886333333336778899**********999999***************************9*************.66**** PP

                  HH..HHSS.--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHH CS
     Pkinase   89 le..rkgs.lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvW 181 
                  +   ++g+ + e+ + ++a  +l++l+yl  kgi HrDl ++N+L++ +g++K++DF  a +++++++  t+  g  ++ APE+ +++    kvDvW
  CDO68792.1  869 IAyaDEGIlFHEKSIARVAGDVLHALDYLQTKGIAHRDLRSDNLLVNLQGVVKLADFSNAVQVTRDNPiRTELAGVAYWQAPEIRSGSYNALKVDVW 965 
                  *99945555*********************************************************99889999*********9988888******* PP

                  HHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  182 slGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  slG +++el   +ppfs+  + +++  e                +l +++  s+++ d+l  l++k  ++R+  +ell+ p++
  CDO68792.1  966 SLGATIWELAQAEPPFSDIADPKEFGDE--------------LPALSQPEIYSRSFHDFLL-LCSKPSSSRPDPHELLSTPFI 1033
                  *****************55554433333..............3345566667888888885.445566778888888887775 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   1.3e-31   5.9e-28       5     254 ..     776    1026 ..     773    1030 .. 0.85

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 1.3e-31
                   EEEEEESSEEEEEEEEET....TTTSSEEEEEEEEEST.TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr    5 kklGeGafGkVvegtlkg....ekekkevkVavKtlke.eateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLr 93  
                   ++++eG+ G+V+ +++       ++++++ Va+K +    + + + ++l +e+++mk ++h +i+ +  +++   e++l+i +++++  +L + + 
   CDO68792.1  776 REIAEGESGSVYAARVLAtshsLEQHSSTFVAIKNVPIlPSGSPKIDDLRRELTLMKGVSHVHILTMDELYVdlVEDSLWICMDLMER-SLADIIA 870 
                   7899**********9988888778889999*****964155566699********************99998778999********98.6888887 PP

                   HTCTT.TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr   94 kkeke.kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDv 188 
                     ++   ++ k++ ++a +v ++++yL++k + Hrdl++ N L++ + vvk++Df  a ++++d+    ++e      W apE+ + +    k Dv
   CDO68792.1  871 YADEGiLFHEKSIARVAGDVLHALDYLQTKGIAHRDLRSDNLLVNLQGVVKLADFSNAVQVTRDNPI--RTELAGVAYWQAPEIRSGSYNALKVDV 964 
                   774441456677899*****************************************99999555444..566677789****************** PP

                   HHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr  189 WsfGvllwEiftlgespypgl.kneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfse 254 
                   Ws G ++wE+++ +e p++++ +++e   + +e   l++pe  ++++++++  c + + ++Rp+ +e
   CDO68792.1  965 WSLGATIWELAQ-AEPPFSDIaDPKE---FGDELPALSQPEIYSRSFHDFLLLCSKPS-SSRPDPHE 1026
                   **********99.9*******45555...45666789999999********9997654.56776555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.8e-10   2.1e-06     154     254 ..     891     985 ..     856    1005 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.8e-10
  Kinase-like 154 irlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclkl 248
                  +    +Lq kg+ h ++++dnll + +g ++l +f++ v++    ++  e +  + ++ pE+++    y+       + k+d+W lG++i+ ++ ++ 
   CDO68792.1 891 LHALDYLQTKGIAHRDLRSDNLLVNLQGVVKLADFSNAVQVTRDNPIrTELAgvAYWQAPEIRSG--SYN-------ALKVDVWSLGATIWELAQAEP 979
                  556689**************************************998655557555689999887..444.......589*****************9 PP

  Kinase-like 249 Pltlat 254
                  P+  ++
   CDO68792.1 980 PFSDIA 985
                  998876 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   7.8e-09   3.5e-05       2      44 ..     146     183 ..     145     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 7.8e-09
                 B---EEEEEEEEEEEETTTTEEES--CCHCCCHHHT.TTSXXX CS
         PBD   2 IStPtnfkHtvHVGwdgdsgnftglPpewkkllkssgItedel 44 
                 IS P nf+H++HV    d+g f+glPp w+  l ++g +e+e 
  CDO68792.1 146 ISLPWNFQHNIHV----DEG-FVGLPPTWAASLADAGFSEEEI 183
                 9************....678.69*************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 6864.94
//
Query:       CDO68793.1  [L=381]
Description: hypothetical protein BN946_scf184805.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-06   29.0   1.4    3.1e-06   27.7   1.4    1.7  1  HMG_box_2   HMG-box domain
    0.00013   22.3   1.3    0.00079   19.8   1.0    2.3  2  HMG_box     HMG (high mobility group) box
  ------ inclusion threshold ------
       0.12   12.5   0.5       0.52   10.5   0.1    2.1  2  Ku_PK_bind  Ku C terminal domain like
       0.15   11.8   0.1       0.25   11.1   0.1    1.3  1  DUF2299     Uncharacterized conserved protein (DUF2299)
       0.39   11.2   8.5      0.058   13.9   3.9    2.0  2  APG6_N      Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   1.4   8.6e-10   3.1e-06       6      66 ..      91     152 ..      87     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 8.6e-10
                 SS--HHHHHHHTTHHHHHHHT--.-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnp.viglaevsklcsekWkalseeeKekYeekAkedkkryd 66 
                 +++nAY+ f     +e+k++  + + + a  s + +e+ k ls+eeK ++ e+  e +++++
  CDO68793.1  91 RKPNAYNAFLHHLAKEAKEQDDDgTLNAAQLSAAHHEQYKMLSKEEKAAFIEELVETRQAQQ 152
                 89******************5559*****************************999998875 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.0   2.2e-07   0.00079       3      59 ..      91     149 ..      89     153 .. 0.88
   2 ?   -0.8   0.0      0.61   2.2e+03      37      52 ..     329     344 ..     313     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.2e-07
                 SS--HHHHHHHHHHHHHHHHS..TTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH CS
     HMG_box   3 Rplsafflfskeqraklkaen..PelknaeiskklgekWkalseeeKkkYeekaekeka 59 
                 R ++a++ f+ +  ++ k+++   +l+ a++s    e++k+ls+eeK+ ++e+  + ++
  CDO68793.1  91 RKPNAYNAFLHHLAKEAKEQDddGTLNAAQLSAAHHEQYKMLSKEEKAAFIEELVETRQ 149
                 889********9999999886226788**************************999987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
                 HHHHHSHHHHHHHHHH CS
     HMG_box  37 ekWkalseeeKkkYee 52 
                  ++k l+++eK+  e+
  CDO68793.1 329 CMFKHLTDAEKAIIEQ 344
                 58999*****986555 PP

>> Ku_PK_bind  Ku C terminal domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00014      0.52      59     107 ..      89     139 ..      70     154 .. 0.66
   2 ?   -1.3   0.0      0.63   2.3e+03      22      40 ..     252     270 ..     242     289 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
  Ku_PK_bind  59 eeeepelyNdFlrdlkkklqs.e.ggdrrefWk.elvkkeklglIskdeaes 107
                  e +p++yN+Fl++l k+ ++ +      +  + +   +e++++ sk+e ++
  CDO68793.1  89 AERKPNAYNAFLHHLAKEAKEqDdD-GTLNAAQlSAAHHEQYKMLSKEEKAA 139
                 57899**************973331.22222210233333577777777665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.63
  Ku_PK_bind  22 avkqlksvIeqlvedslgd 40 
                  v+ lks I+++v dsl +
  CDO68793.1 252 KVNWLKSEIRKMVADSLVE 270
                 5677888899998888765 PP

>> DUF2299  Uncharacterized conserved protein (DUF2299)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     7e-05      0.25      56     111 ..     120     177 ..     116     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
                 E--HHHHHHHHHS-HHHHHHHHHHHHHHHTTTT-EEEEE-TTS--...-EEEEEEEEE CS
     DUF2299  56 kvseehkkalsslkeeerkeflselkrdLlrlcvdfqlipqdeel..pqsiqvskeiy 111
                 ++s +h+++++ l++ee++ f++el ++  + ++  +l+  + +l   ++ q ++e+ 
  CDO68793.1 120 QLSAAHHEQYKMLSKEEKAAFIEELVETRQAQQYGLRLTQRARTLdiNRTTQLIEELL 177
                 7899*********************999888888888888888776666666666664 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.9   1.6e-05     0.058      17      76 ..      85     150 ..      78     175 .. 0.74
   2 ?   -2.7   0.1       2.2   7.9e+03      31      33 ..     346     348 ..     318     378 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.6e-05
      APG6_N  17 qleqaekerdaYeeflkklkkekkeeek.....qdeeleeleeeleklekeeeel.leeLkeleke 76 
                 +l++ae++ +aY++fl++l ke+ke+++       +  ++ +e+++ l+kee+++ +eeL e+ ++
  CDO68793.1  85 KLRAAERKPNAYNAFLHHLAKEAKEQDDdgtlnAAQLSAAHHEQYKMLSKEEKAAfIEELVETRQA 150
                 7999******************98877678774222223333346666666665525666666554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
      APG6_N  31 flk 33 
                 + +
  CDO68793.1 346 YVN 348
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2612.79
//
Query:       CDO68794.1  [L=575]
Description: hypothetical protein BN946_scf184805.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4090.81
//
Query:       CDO68795.1  [L=369]
Description: hypothetical protein BN946_scf184805.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-11   43.1   0.4      4e-05   24.3   0.0    4.0  4  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.2e-09     4e-05       2      38 .]     121     159 ..     120     159 .. 0.85
   2 ?   -3.0   0.0      0.97   1.7e+04      17      26 ..     179     188 ..     178     189 .. 0.73
   3 !   10.1   0.0   6.9e-05       1.2       5      37 ..     206     242 ..     202     243 .. 0.81
   4 !    4.1   0.0    0.0052        94      25      38 .]     271     284 ..     255     284 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.2e-09
                 EEEEEEESSSSEEEEE....EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHssvtsla....fspdgawlasGsdDgtvriWd 38 
                 +++ ++ +H  v++++     ++ g+wla+Gs D  +++Wd
  CDO68795.1 121 EPIFIFPAH--VSCIKtvaaSPQGGKWLATGSADEIIKVWD 159
                 578899***..555555559********************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.97
                 EEETTSSEEE CS
        WD40  17 afspdgawla 26 
                 ++s dg+++a
  CDO68795.1 179 RWSTDGTLFA 188
                 6888888865 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 6.9e-05
                 EEEESS.SSEEEEE....EETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtsla....fspdgawlasGsdDgtvriW 37 
                 + + +H s  ++++    ++ dg +l++G++D+++ i+
  CDO68795.1 206 HNI-THpSRLHDIKfckrVDGDGELLLAGGEDKKLSIY 242
                 443.586777788888899****************997 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.0052
                 EE.EEETTSEEEEEE CS
        WD40  25 la.sGsdDgtvriWd 38 
                 ++  +s Dg+vr++d
  CDO68795.1 271 VCtISS-DGKVRLFD 284
                 321257.******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2712.31
//
Query:       CDO68796.1  [L=920]
Description: hypothetical protein BN946_scf184805.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-21   76.0   0.0    1.5e-21   76.0   0.0    3.9  5  DUF1604    Protein of unknown function (DUF1604)
    6.3e-07   29.2   0.2    6.3e-07   29.2   0.2    2.9  2  G-patch    G-patch domain
  ------ inclusion threshold ------
      0.032   14.3   0.0      0.032   14.3   0.0    3.2  4  G-patch_2  G-patch domain


Domain annotation for each model (and alignments):
>> DUF1604  Protein of unknown function (DUF1604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   2.4e-25   1.5e-21      27      82 ..      68     122 ..      46     125 .. 0.88
   2 ?   -2.6   0.0      0.84     5e+03      37      55 ..     170     188 ..     166     216 .. 0.46
   3 ?   -1.8   0.0      0.46   2.7e+03      56      80 ..     421     445 ..     399     449 .. 0.77
   4 ?   -1.8   0.5      0.47   2.8e+03      40      59 ..     797     816 ..     793     830 .. 0.68
   5 ?   -2.2   0.1      0.61   3.6e+03      52      67 ..     851     863 ..     836     874 .. 0.47

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 2.4e-25
     DUF1604  27 saGyfntVGskeGwtPstfkSsrkerakkakkqrvedfmDeedleeleeskkletk 82 
                   GyfntVGskeGwtPstf+Ssr++rakk k +r+edfmDeedl+e++e++kl  +
  CDO68796.1  68 QYGYFNTVGSKEGWTPSTFVSSRSDRAKK-KVARPEDFMDEEDLAEIRENRKLVDE 122
                 57***************************.99****************99998765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.84
     DUF1604  37 keGwtPstfkSsrkerakk 55 
                 k Gw+P +    r + a++
  CDO68796.1 170 KMGWRPGQGIGPRLTYAQR 188
                 5677776655555444444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.46
     DUF1604  56 akkqrvedfmDeedleeleeskkle 80 
                 ak+++v ++m + d+e+le+ ++ +
  CDO68796.1 421 AKTRSVFEYMSQKDRERLESIRNAK 445
                 5677889999999999998776655 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.47
     DUF1604  40 wtPstfkSsrkerakkakkq 59 
                 + P + + srk++a+k+ k+
  CDO68796.1 797 FVPRSERDSRKDKADKKDKK 816
                 66777777788777773333 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 0.61
     DUF1604  52 rakkakkqrvedfmDe 67 
                 +++k  k+r e + +e
  CDO68796.1 851 KERK--KKRKERH-EE 863
                 2222..2222221.12 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.2     1e-10   6.3e-07       2      22 ..     161     181 ..     160     194 .. 0.85
   2 ?   -0.5   2.5      0.19   1.1e+03      13      34 ..     237     262 ..     236     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1e-10
     G-patch   2 sniGvkmLqkmGWkpGqGLGk 22 
                 +++G+++L+kmGW+pGqG+G 
  CDO68796.1 161 DSVGAQILKKMGWRPGQGIGP 181
                 79******************3 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.19
     G-patch  13 GWkp....GqGLGkkeqGiaePieak 34 
                 G+ p     +G G  ++G+++P   +
  CDO68796.1 237 GYTPgiglNEGVGYGGSGQRQPSGPQ 262
                 777755557899*********98766 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.3e-06     0.032      16      36 ..     162     182 ..     158     196 .. 0.83
   2 ?   -0.9   0.1       0.3   1.8e+03      45      59 ..     225     240 ..     204     271 .. 0.75
   3 ?   -5.3   1.2         3   1.8e+04      33      40 ..     813     820 ..     807     825 .. 0.36
   4 ?   -4.5   1.3         3   1.8e+04      32      39 ..     850     857 ..     845     864 .. 0.35

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.3e-06
   G-patch_2  16 eFGaAlLrGMGWkegqgigkn 36 
                 + Ga++L+ MGW +gqgig  
  CDO68796.1 162 SVGAQILKKMGWRPGQGIGPR 182
                 679***************976 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.3
   G-patch_2  45 epkrRpg.rlGLGakp 59 
                 +  +R++ + GLG +p
  CDO68796.1 225 VTAPRKDnFHGLGYTP 240
                 5556666666777654 PP

  == domain 3  score: -5.3 bits;  conditional E-value: 3
   G-patch_2  33 igknkkgr 40 
                 ++k++k++
  CDO68796.1 813 KDKKSKEK 820
                 22222222 PP

  == domain 4  score: -4.5 bits;  conditional E-value: 3
   G-patch_2  32 gigknkkg 39 
                 +++++kk 
  CDO68796.1 850 NKERKKKR 857
                 22222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 5802.92
//
Query:       CDO68797.1  [L=163]
Description: hypothetical protein BN946_scf184805.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1182.28
//
Query:       CDO68798.1  [L=551]
Description: hypothetical protein BN946_scf184805.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-127  426.2  31.9   1.6e-127  426.0  31.9    1.0  1  AA_permease    Amino acid permease
    5.9e-35  120.9  38.3    7.3e-35  120.6  38.3    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.0  31.9  1.8e-131  1.6e-127       1     474 [.      52     514 ..      52     519 .. 0.97

  Alignments for each domain:
  == domain 1  score: 426.0 bits;  conditional E-value: 1.8e-131
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++ia++g  Gtglf+glg+ l+ aGplgal+ay ++g+  ++  +slge+ ++ p sg+f ++a+r ++p+lGf++G+ny+++ ++ +++e+taa+
   CDO68798.1  52 HVQMIAIAGTLGTGLFLGLGSSLQGAGPLGALIAYGVVGTTAYASLCSLGEMTSHAPISGSFPHFAARWVDPALGFAVGWNYFYTNAVSVPVEVTAAG 149
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   li+fw   +d++ + ++ a + +  + in++gv+++ge efi+++ik++ i  +ii g ++  gg+pn+++ gf++++ +g ++ + l p+   +  
   CDO68798.1 150 LLITFW--DPDINHQAAYTAAICICAVSINIFGVRWFGESEFIFSIIKLLLITVLIITGLVIDLGGGPNHQRlGFHYWKTPGPLAGAGLEPN--HIHL 243
                  ******..999887777766666666679***************************************************************..6666 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                   +f++++sv+v+++f+f+G+elvai+a+E+++P+++i ka+++v++ri++fY l++l+ g+lvp++d++ll+d+ +a  sp+vi+i+ +g++vl+++i
   CDO68798.1 244 DRFLGILSVIVQAAFSFQGMELVAIAASETESPRRNIAKAVRRVFWRIMLFYMLGVLITGMLVPYDDPNLLQDTGNAaESPYVIAITRAGIKVLPHII 341
                  77*************************************************************************9999******************* PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  na+i+t+a+s++ns+l++asRvly la +g aP+v+++++k+g P++a+l+s+++++l++++ s+ +a  +vfn+++++s++ g++ w++++l+y+ f
   CDO68798.1 342 NAGIFTSAFSAGNSFLFCASRVLYGLAVRGQAPRVFAYCTKGGLPIVAVLFSSCFAFLSFMNVSSGAA--TVFNWFVNLSTVGGFFGWGAMNLTYIFF 437
                  ************************************************************88888888..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                   + +++qg +  +l ++ +l+p++++++l+ +++++li++++ +         ++a++f+ +y+++++f ++++ +k+++++k+
   CDO68798.1 438 YRGFRAQGLDRTKLVYHNRLQPYLAWWGLIWITFFILINGFAVFWD-------FNASDFLTSYINIPIFFALYFFWKVIKRTKI 514
                  ******************************************9999.......9**************************9987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6  38.3   8.1e-39   7.3e-35       6     410 ..      53     491 ..      48     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 8.1e-39
  AA_permease_2   6 afalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsva 99 
                    + +++i  ++g+g f     ++  +gp+ +l+  ++v+ + +a l  + E++s+ p sg   +++++   + ++f ++w +++  +++++ + + a
     CDO68798.1  53 VQMIAIAGTLGTGLFLGLgsSLQGAGPLGALIAYGVVGTTAYASLCSLGEMTSHAPISGSFPHFAARWVDPALGFAVGWNYFYTNAVSVP-VEVTA 147
                    5678888889999998867766678888777777777777789999*****777*********************************995.56778 PP

  AA_permease_2 100 asyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt........... 181
                    a+ l+++++pd++++        +ai i  + ini+g+++ +   +i  i+k+ l++++lii+gl++  ggg + +    + ++t           
     CDO68798.1 148 AGLLITFWDPDINHQ----AAYTAAICICAVSINIFGVRWFGESEFIFSIIKL-LLITVLIITGLVIDLGGGPNHQrlgFHYWKTpgplagaglep 238
                    8889999****9664....344578889999**********************.799**********88887776655533333344443333333 PP

  AA_permease_2 182 ffpngwpgv........llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv....aalf 263
                     +      +        l+++ ++++sf+G+e +a  ++e   +++++ ka   ++  ++++y+l  +   + vp d  + l+++g++    + + 
     CDO68798.1 239 NH------IhldrflgiLSVIVQAAFSFQGMELVAIAASEteSPRRNIAKAVRRVFWRIMLFYMLGVLITGMLVPYDDPNLLQDTGNAaespYVIA 328
                    33......044443344888999*****************666669*******************999999999*999977777666444448899 PP

  AA_permease_2 264 feavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgli 359
                      ++g kv+ +i++++i+ s++ a+n++++ +srvl+ la  g  Pr+fa   k g pi+a+ ++  ++++ ++ ++ + ++ +n+ +++s++g +
     CDO68798.1 329 ITRAGIKVLPHIINAGIFTSAFSAGNSFLFCASRVLYGLAVRGQAPRVFAYCTKGGLPIVAVLFSSCFAFLSFMNVSSGAATVFNWFVNLSTVGGF 424
                    999999***************************************************************887766654449*************** PP

  AA_permease_2 360 isylll.iigalilr.kkrphlkr..............pgkilvaiigalfllfllvalffppkgpa 410
                    + ++++ +++ +++r ++   l r              ++  ++ ++++l++ f++++ f  ++ ++
     CDO68798.1 425 FGWGAMnLTYIFFYRgFRAQGLDRtklvyhnrlqpylaWWGLIWITFFILINGFAVFWDFNASDFLT 491
                    ******4555555553333333445577777899888877778888899999999988775555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3841.22
//
Query:       CDO68799.1  [L=287]
Description: hypothetical protein BN946_scf184805.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-11   43.0   0.0    5.6e-11   42.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    9.2e-11   42.3   0.0    1.7e-10   41.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.5e-10   41.7   0.0    4.2e-10   40.3   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
    2.3e-07   31.4   0.0    4.3e-07   30.5   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    6.7e-05   22.7   0.0    0.00011   22.0   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
     0.0044   18.0   0.0     0.0085   17.1   0.0    1.5  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.025   14.2   0.0    1.4  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   2.2e-14   5.6e-11      27     154 ..       4     155 ..       1     159 [. 0.80

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 2.2e-14
  Methyltransf_23  27 LdiGcGtG.illevl..rengf.svtgvDlspeaveiae...........kakkaqkdqfdeqeaae..........pqgkfdlIvlrevlehv 95 
                       +iGcG G  + ++l   +n++ ++ ++D s++av++++           ++  a+          +          + g+ d+I+l +v+  +
       CDO68799.1   4 AEIGCGAGnAVFPLLeaNKNPHlTLKAYDYSSHAVKLVQnnplylspplgTIEAAVW---------DltsselppglEPGSVDIITLVFVMSAL 88 
                      59******778888843445668999***********99876666665553333333.........13333333345566************** PP

  Methyltransf_23  96 pd..ppellrqiatllkpgGylllseplasl......kedrllldwlylvpagrhisffsarslkel 154
                      ++  ++ ++++ ++llkpgG++l +++++++      k  rll+d+ y++ + + ++ff  ++l+ l
       CDO68799.1  89 HPreWANAVSNTHKLLKPGGLVLMRDYGRYDltqlrfKGGRLLDDNFYIRGDKTRVYFFELDELALL 155
                      *556*************************9999999889999999*******9*********99866 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   6.7e-14   1.7e-10       1      97 []       3     108 ..       3     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 6.7e-14
                      EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBC..CGBS..SSTTTEEEEEEESTGGGSSHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeegl...nvefvqgda..edlp..fedgsfDlvvssgalhhlsdedleka 85 
                      v ++GcG G+ ++ l+++  + + ++ + D+s+ +++ ++++    ++    +e  + d+  ++lp  +e gs+D+++++++++ l+++++++a
       CDO68799.1   3 VAEIGCGAGNAVFPLLEANkNpHLTLKAYDYSSHAVKLVQNNPLYLSPplgTIEAAVWDLtsSELPpgLEPGSVDIITLVFVMSALHPREWANA 96 
                      789**************98635899999*************9988666689999999999444477566999********************** PP

                      HHHHHHHEEEEE CS
  Methyltransf_25  86 lkeiarvLkpgG 97 
                      +++ +++LkpgG
       CDO68799.1  97 VSNTHKLLKPGG 108
                      ***********9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.6e-13   4.2e-10       2      98 ..       5     109 ..       4     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.6e-13
  Methyltransf_12   2 eiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDlvvasnvlhhl..kdirevl 86 
                      eiGcG G+ +++lle++  p++++ ++D+s++a+ +  +    +       +e  + dl +++ +     +s+D++++ +v+++l  ++++ ++
       CDO68799.1   5 EIGCGAGNAVFPLLEANknPHLTLKAYDYSSHAV-KLVQNNPLYLSPPLGTIEAAVWDLTSSELPpglepGSVDIITLVFVMSALhpREWANAV 97 
                      9****************77777777*********.55555555555566666777777666666677999***************999****** PP

  Methyltransf_12  87 dnirklLkpgGr 98 
                      +n +klLkpgG 
       CDO68799.1  98 SNTHKLLKPGGL 109
                      ***********7 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.7e-10   4.3e-07       2      95 ..       5     111 ..       4     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.7e-10
                      EET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCC..TS..S-TT-EEEEEEES-CCC-..CCHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl...kvefvvadaek..lp..fednsfDlvvssevlhhv..edpekalk 82 
                      ++GcG+G  + +l ++      ++ + D+s  ++kl++++     +   ++e  v d+++  lp  +e +s+D++++ +v+  +   +++ a++
       CDO68799.1   5 EIGCGAGNAVFPLLEANknphLTLKAYDYSSHAVKLVQNNPLYLSPplgTIEAAVWDLTSseLPpgLEPGSVDIITLVFVMSALhpREWANAVS 98 
                      79***********9554556899***********99966654444477988899999995558568999***************878******* PP

                      HHHHHEEEEEEEE CS
  Methyltransf_11  83 eiaRvLkpgGllv 95 
                      + +++LkpgGl++
       CDO68799.1  99 NTHKLLKPGGLVL 111
                      **********986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.3e-08   0.00011       6     113 ..       2     116 ..       1     152 [. 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.3e-08
  Methyltransf_31   6 rvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielArenaqklgld....nveFeqgdiee..lekl.ledekfDlilsnevl..nalad 89 
                      +v ++GCG+G+ +f l e + +p+ ++   D+s +a++l ++n   l l+     +e  + d ++  l+   le+ ++D+i+   v+   +  +
       CDO68799.1   2 VVAEIGCGAGNAVFPLLEaNKNPHLTLKAYDYSSHAVKLVQNN--PLYLSpplgTIEAAVWDLTSseLP-PgLEPGSVDIITLVFVMsaLHPRE 92 
                      7899*************777777788999*************7..333333355788888888875355.55888*****99976667667788 PP

  Methyltransf_31  90 pdkileeiervlkpggilliedpr 113
                       +++  + +++lkpgg +l++d+ 
       CDO68799.1  93 WANAVSNTHKLLKPGGLVLMRDYG 116
                      88899999************9986 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.3e-06    0.0085       2     106 .]       5     115 ..       4     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.3e-06
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare......aglddr.vrlikadseealaslaagsiD...llfiDgghaaeavl 85 
                      EiG+ +G+  + ll+a ++ +  +l a d      +a +l+++        l ++ + ++  +s+e+ ++l+ gs+D   l+f+      ++ +
       CDO68799.1   5 EIGCGAGNAVFPLLEANKNPHL-TLKAYDYSS---HAVKLVQNnplylsPPLGTIeAAVWDLTSSELPPGLEPGSVDiitLVFVMSALHPREWA 94 
                      9*******99999999998887.899999999...8888888878555533333358899999999999***9999977777777777789999 PP

  Methyltransf_24  86 edleallprlapggvvlfdDi 106
                      +++ + +++l+pgg+vl+ D+
       CDO68799.1  95 NAVSNTHKLLKPGGLVLMRDY 115
                      99***************9987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.6e-06     0.025      35      74 ..       3      44 ..       1      79 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.6e-06
                EEEET-TTS..HHHHHHHHHTTC.EEEEEESBHHHHHHHHHH CS
         MTS 35 vlDlGcGaG..vlgaalakespeaevtlvdvdarAlesaken 74
                v+ +GcGaG  v  +  a+++p+++++++d + +A+++ ++n
  CDO68799.1  3 VAEIGCGAGnaVFPLLEANKNPHLTLKAYDYSSHAVKLVQNN 44
                7889**9994455666678899999*************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2136.23
//
Query:       CDO68800.1  [L=1715]
Description: hypothetical protein BN946_scf184805.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-71  238.1   1.0    1.8e-35  122.9   0.1    2.3  2  RhoGEF    RhoGEF domain
    3.8e-62  210.4   0.0    5.7e-62  209.8   0.0    1.2  1  CNH       CNH domain
    2.4e-18   66.6   0.0      7e-18   65.0   0.0    1.8  1  PH_5      Pleckstrin homology domain
    4.7e-05   23.4   0.0    0.00023   21.2   0.0    2.2  3  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin
     0.0014   19.1   0.0     0.0045   17.5   0.0    2.0  1  PH        PH domain
  ------ inclusion threshold ------
      0.018   14.8   0.1       0.19   11.5   0.1    2.3  1  PH_13     Pleckstrin homology domain
      0.036   13.9   0.0        3.2    7.6   0.0    2.5  2  PH_16     PH domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.1   6.9e-39   1.8e-35       1     177 [.     680     860 ..     680     864 .. 0.94
   2 !  113.9   0.1     4e-36     1e-32       1     179 [.     905    1087 ..     905    1090 .. 0.89

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 6.9e-39
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCT..CCHHHHHH....HHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHH.HHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplsele..vlseeeik....iiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkk.Yse 92 
                 +i+ l+  E++Y+rdL ++ + +++pl++++  v+ + +i+    ++F+n+ ++ e++ + lle++  r+  +e+   +q igd+fl+ a +f+  Y +
  CDO68800.1 680 IIHKLILKEKQYLRDLDTIETLFIRPLRNANppVIRPTDIDefidEVFGNVLDLRECN-RRLLETIYVRQ--REQAPVIQGIGDIFLDAATEFRVtYPH 775
                 68899999********************999**7777777755558************.99999887777..689999**************9977*** PP

                 HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHH CS
      RhoGEF  93 YcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikev 177
                 Y+ n p a+k++k +++kn++fk+f+e+++++p +++ldL+++L++P   l +Yp++L+++++ t e +pd + lk+a++aik++
  CDO68800.1 776 YIGNLPVAEKRMKDELEKNAEFKRFVEQCSRHPDAHRLDLKHFLSRPSEHLQKYPVMLEAICNETTEGNPDIDFLKEAIDAIKKL 860
                 **********************************************************************************997 PP

  == domain 2  score: 113.9 bits;  conditional E-value: 4e-36
                  HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCT......CCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHH.H CS
      RhoGEF    1 vikElleTErsYvrdLkvlvevylkplsele......vlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkk.Y 90  
                  +i E+++ E +YvrdL+ +   y+ pl+e+          e+ i+++F+n  e+++ h + +l++L e +  +ee+  ++si+  + +   +f++ Y
  CDO68800.1  905 IIFEVIKGEMDYVRDLENIEVMYVGPLREMDppiiprDRLEQFIHEVFHNYAELHAHH-RRMLNKLFEIQ--REEHPVIRSITAAIYDAVLNFREaY 998 
                  799*************************999*94444444555558************.88888888888..577777888888777666666655* PP

                  HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHH CS
      RhoGEF   91 seYcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevas 179 
                   eY+ nyp a  +++ ++++n+ fkaf++++ ++p +++ld+++++ +P+ Rl+rY+LLLk++l  tpe h+d++ + ++l+ ik++ +
  CDO68800.1  999 MEYIPNYPIAAYRIDDEMANNPAFKAFVDQCTRHPDAHRLDMKNFINRPIPRLLRYELLLKNILDETPEGHEDRDYIPQVLDVIKSLGK 1087
                  *************************************************************************************9866 PP

>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   0.0   2.2e-65   5.7e-62       5     272 ..    1326    1615 ..    1322    1618 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.8 bits;  conditional E-value: 2.2e-65
         CNH    5 tggqrlllGteeGlyllnlsdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenltqklpetkgchffairng 101 
                  +g+  +++G+ eG+++  + d+++ +++ +l+ vtq+a le++ ++l+l+dk+L++y+++aL +++ +s       ++ +qkl+ +k++hff+  +g
  CDO68800.1 1326 DGRGLVAIGCAEGVWIGFRHDSRSLRRVLHLKMVTQCAMLEDFGIFLVLADKSLFAYHIEALVPSSPQSA----HTTQTPQKLSGNKDVHFFS--VG 1416
                  567789*************************99*********************************5552....3344699************..** PP

         CNH  102 yskekfLvvavks.....kivllewneplkkfk.....................kklrefqvpaevfsisvlkpklcvgvakgFelvnldegaaesl 172 
                  + ++++Lv+++k+      + +le++  + ++                      + +r+f +p+e++++ +lk k+++ ++kgFe+++l++ ++ ++
  CDO68800.1 1417 NLNGRTLVIYMKKkgldsVFRVLEPVVGKINERtrapqtfgsrlglrsqrsewfRVYRDFFLPSEAYDLIFLKAKIVILCTKGFEIMDLTDFKSVTI 1513
                  *****************99******996655557*************************************************************** PP

         CNH  173 ldpedns.ldfaarkenlkplaviqisedefLlcydefavyvdlqGrrsr.dseleWegkPesvaclepyllafhknfieirsvetgelvqeisgkk 267 
                  ++ +d++  ++a+r e+++p+++++ s+defLlcydef+ yvd++G++sr   ++eWeg++e+va   py+l f++ fieir+vetg+l q+i+g++
  CDO68800.1 1514 PQRDDPRlEKLAKRCESCRPMGMFRSSNDEFLLCYDEFGLYVDRHGDPSRsIGTIEWEGTAEHVAWHPPYVLLFDSRFIEIRHVETGRLAQIIPGND 1610
                  *******9999***************************************99********************************************* PP

         CNH  268 lrfll 272 
                  +r++ 
  CDO68800.1 1611 VRCIW 1615
                  **975 PP

>> PH_5  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.7e-21     7e-18       1     133 [.    1128    1267 ..    1128    1268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.7e-21
        PH_5    1 lifkgtlkkketsksesa...diqvyLfDhalLlvkiktvnkreqykvyrrPiPLeLLvvseaedvpkkkgl....kkrk.ssslikkkksssnlvl 89  
                  li+ g+l +++ +  e +   ++ v LfD++l+++k+k  +   +y vyrrPiPL LL+++++ d p+++g          s+++  ++ + + +++
  CDO68800.1 1128 LIHSGKLLRQPDTGFEWNgwtELFVLLFDNYLVMTKPKEKDGVTKYHVYRRPIPLDLLTLANFTDPPTQRGNsilrL--GrSERHAGDAGTPTGAQQ 1222
                  688888888888887766788********************************************999988754431..123555555555555555 PP

        PH_5   90 vpeka.ekkkgyaitflhlGkkgyeltLyastlaarqkwlekiek 133 
                   pe+a ++   y+ t+ h G+ g   t++a++++ar++w +k+e+
  CDO68800.1 1223 SPETAtDSRLVYPCTIHHNGRLGGLYTVFAESAQARNEWKQKLEE 1267
                  55554055789******************************9986 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     9e-08   0.00023       4      72 .]     512     590 ..     509     590 .. 0.88
   2 ?   -3.3   0.1       3.8   9.8e+03      14      24 ..    1308    1318 ..    1307    1320 .. 0.80
   3 ?   -2.4   0.0         2     5e+03       5      27 ..    1463    1486 ..    1460    1493 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9e-08
                 SCEEECTTEEESSE-HHHHHHHHHHHHTS..........SSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   4 lkdrrkhlktypncftGseavdWLldnld..........iedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                   ++ k    yp +ftG+++v+ ++++++          + dr+ A++++++L +q ++++ve   + ++d+   +Y+f
  CDO68800.1 512 RGTHVKGSIPYPRAFTGKDIVSTIQSQIQrelllthgisTNDRRAALQVARSLQSQLFFYEVEWGDRPLQDGVEDVYMF 590
                 5567777889****************************************************65555599998878776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
                  ESSE-HHHHHH CS
         DEP   14 ypncftGseav 24  
                  ++n+ftG+  +
  CDO68800.1 1308 HENAFTGKVTC 1318
                  89*****9665 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2
                  CEEECT.TEEESSE-HHHHHHHHH CS
         DEP    5 kdrrkh.lktypncftGseavdWL 27  
                  +++r   +++y++ f+ sea d +
  CDO68800.1 1463 RSQRSEwFRVYRDFFLPSEAYDLI 1486
                  55666668************9987 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0045       2     104 ..    1129    1269 ..    1128    1270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
                  EEEEEEEEETSSSSC..SEEEEEEEEETTEEEEESST...TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE..................... CS
          PH    2 vkeGwLlkkgsgkkk..swkkrwfvLkdsellyyknd...ksekdkepkgsislsncevvevvatedpkrkfcfel..................... 72  
                  +++G Ll++  +     +w + ++ L+d+ l++ k++      k + +++ i+l+ ++    +++++   +  ++l                     
  CDO68800.1 1129 IHSGKLLRQPDTGFEwnGWTELFVLLFDNYLVMTKPKekdGVTKYHVYRRPIPLDLLTLANFTDPPTQRGNSILRLgrserhagdagtptgaqqspe 1225
                  67888888877766688*********************99778899999999999999998865445555555555888888888888888888999 PP

                  ...........EESTSSS.TEEEEEEESSHHHHHHHHHHHHHHH CS
          PH   73 ...........riverng.srtyllqasseeerkeWikaiqsai 104 
                             +i+++++    y+  a+s++ r+eW + +++ai
  CDO68800.1 1226 tatdsrlvypcTIHHNGRlGGLYTVFAESAQARNEWKQKLEEAI 1269
                  99999989998666666678********************9987 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.4e-05      0.19      21     132 ..    1125    1268 ..    1104    1282 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-05
                  B--EEEEEEEEET.......TT--EEEEEEESSEEEEEEEE----.-------S-SS--EEEEE-SS-EETTSEEEE-................... CS
       PH_13   21 pRkllhsGklyKa.......ksnKElvgFLfNDFlLltqpvkklsvssaqeklfesksnaqfklYkkpiflnevlvkk................... 91  
                  +R l+hsGkl ++        +  El   Lf ++l++t+p              e+   +++++Y++pi l+ +++ +                   
  CDO68800.1 1125 NRSLIHSGKLLRQpdtgfewNGWTELFVLLFDNYLVMTKPK-------------EKDGVTKYHVYRRPIPLDLLTLANftdpptqrgnsilrlgrse 1208
                  69999999998762111111233444445555555555553.............4455679*****************7777777777777777777 PP

                  ..................-SSS-.----EEEEEESSE...EEEEEESSHHHHHHHHHHHHHH CS
       PH_13   92 ..................psdksdssekvlklsdidk...vitlkaesanersaWvkkikeA 132 
                                    ++d++       ++++  +    +t+ aesa+ r++W +k++eA
  CDO68800.1 1209 rhagdagtptgaqqspetATDSRLVYP--CTIHHNGRlggLYTVFAESAQARNEWKQKLEEA 1268
                  777777776666654332222222222..233333332225666777777777777777766 PP

>> PH_16  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0012       3.2      10      57 ..    1119    1172 ..    1111    1180 .. 0.82
   2 ?    3.6   0.0     0.022        55     101     124 ..    1246    1269 ..    1225    1270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
       PH_16   10 ldlt..krkLiheGpltwrlak....gklvdlhvvlledvlvllqkqdeklvlk 57  
                  +dl+  +r+Lih+G+l  +  +    +  ++l v+l+++ lv+ + +++  v k
  CDO68800.1 1119 MDLLneNRSLIHSGKLLRQPDTgfewNGWTELFVLLFDNYLVMTKPKEKDGVTK 1172
                  6777779**********999995555599**************99777665555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.022
       PH_16  101 qmyelvastkeerktWlkliseav 124 
                   +y + a++++ r+ W + ++ea+
  CDO68800.1 1246 GLYTVFAESAQARNEWKQKLEEAI 1269
                  689*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.99u 0.28s 00:00:01.27 Elapsed: 00:00:00.44
# Mc/sec: 11666.43
//
Query:       CDO68801.1  [L=163]
Description: hypothetical protein BN946_scf184805.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1265.57
//
Query:       CDO68802.1  [L=416]
Description: hypothetical protein BN946_scf184805.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.21   11.4   0.0    1.3  1  DRTGG     DRTGG domain


Domain annotation for each model (and alignments):
>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.2e-05      0.21      49      92 ..     347     402 ..     344     409 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.2e-05
                 T-HHHHHHHTT-T............EEEEEEETT----HHHHHHHHHHT--EEE-S CS
       DRTGG  49 DRediqlaaleag............iaalilTgglepseevlklaeeaglpvlsve 92 
                  Rediq+a l+++            + a+ + g  e +e++ +l +ea +p+l+++
  CDO68802.1 347 KREDIQMAFLDENpivdadflhrfdTTAIYVLGTQESDEQLNRLRNEALIPILETH 402
                 59***********************99**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3038.15
//
Query:       CDO68803.1  [L=212]
Description: hypothetical protein BN946_scf184805.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.053   13.7   0.1         13    5.9   0.0    2.3  2  Acetyltransf_6  Acetyltransferase (GNAT) domain
        4.4    6.3  10.2         24    3.8  11.0    1.7  2  FAM199X         Protein family FAM199X


Domain annotation for each model (and alignments):
>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0018        16      84     109 ..      90     116 ..      82     123 .. 0.91
   2 ?    5.9   0.0    0.0014        13      68     108 ..     153     193 ..     122     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0018
  Acetyltransf_6  84 Avalglrsgdrlyywlggy.dpelakl 109
                     +++lgl  ++r+ +w+g y dp+++k+
      CDO68803.1  90 GFVLGLAERQRWGLWYGKYsDPDFEKY 116
                     799********************9876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0014
  Acetyltransf_6  68 rgalrlyvlrldgrpvAvalglrsgdrlyywlggydpelak 108
                     r + rl+ +r+  +  A++++lr+++++  +++  dpel k
      CDO68803.1 153 RLRRRLLPVRVSKQEEAYIFVLRDNGTARGMIAHTDPELLK 193
                     5566788888888889*********************9854 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  11.0    0.0027        24     208     271 ..       5      67 ..       1      84 [. 0.71
   2 ?   -1.4   0.0       0.1   9.3e+02     115     139 ..     115     139 ..     111     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0027
     FAM199X 208 astsgvsaasssnasmvssassstasvgssaansaanisrahsdsnlssaaerirdskkrskqr 271
                 +sts  sa++s++as  +sas+s+ + +s++ + +  +s + s s+ +s+ae   d   r+ q 
  CDO68803.1   5 TSTS-ASASASASASASASASASALAPASTSPSLSPPMSTSPSTSTSTSTAEPCLDEVARALQM 67 
                 3333.34555555666666666666667777777899******99999****999998888775 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.1
     FAM199X 115 lpwsamtndeqveyieylsrkvste 139
                   ws ++ + + e + +lsr v t 
  CDO68803.1 115 KYWSELSPEAKEERLRFLSRAVITC 139
                 5799****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 1536.22
//
Query:       CDO68804.1  [L=219]
Description: hypothetical protein BN946_scf184805.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1651.02
//
Query:       CDO68805.1  [L=199]
Description: hypothetical protein BN946_scf184805.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-11   43.8   0.0    2.3e-11   43.4   0.0    1.1  1  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain


Domain annotation for each model (and alignments):
>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.3e-15   2.3e-11      80     139 ..      74     133 ..      69     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.3e-15
  SQHop_cyclase_N  80 aYlALkllGdspdapalarArefilarGGvakvrvfTrilLalfglvpweavpalPpelm 139
                      a +A+++lG++pd+p  ++Ar ++++ GG++ v ++ +++L+++ +++w++  ++P el 
       CDO68805.1  74 ANCAIRILGVKPDHPVAVKARGCLHKLGGATGVPSWGKFWLSVLNVYDWDGNHMIPTELC 133
                      668*******************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1675.32
//
Query:       CDO68806.1  [L=176]
Description: hypothetical protein BN946_scf184805.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        0.1   12.7   0.2         15    5.7   0.0    2.2  2  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0014        26      84     109 ..      53      79 ..      49      85 .. 0.91
   2 ?    5.7   0.0   0.00084        15      72     108 ..     121     157 ..     104     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0014
  Acetyltransf_6  84 Avalglrsgdrlyywlggy.dpelakl 109
                     +++lgl  ++r+ +w+g y dp ++k+
      CDO68806.1  53 GFVLGLAERQRWGFWWGKYmDPHFEKY 79 
                     799****************9**99876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00084
  Acetyltransf_6  72 rlyvlrldgrpvAvalglrsgdrlyywlggydpelak 108
                     rl+ +++  +  A++++lr+++++  +++  dpel k
      CDO68806.1 121 RLLPVWVSKQEEAYVFVLRDDGTARGMIAHTDPELMK 157
                     55555666666799*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1430.34
//
Query:       CDO68807.1  [L=572]
Description: hypothetical protein BN946_scf184805.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4186.22
//
Query:       CDO68808.1  [L=159]
Description: hypothetical protein BN946_scf184805.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.01   15.8   0.9      0.013   15.4   0.9    1.2  1  FlxA        FlxA-like protein
       0.01   16.3   2.4      0.015   15.8   2.4    1.2  1  Spectrin    Spectrin repeat
      0.027   14.6   0.8      0.035   14.3   0.8    1.1  1  RasGAP_C    RasGAP C-terminus
      0.055   13.3   4.1      0.071   12.9   4.1    1.1  1  She9_MDM33  She9 / Mdm33 family
      0.062   12.7   0.5      0.064   12.6   0.5    1.2  1  DUF4407     Domain of unknown function (DUF4407)
      0.089   13.0   0.5       0.12   12.6   0.5    1.1  1  PIN_2       PIN domain
       0.16   12.2  10.6       0.24   11.6  10.6    1.3  1  CENP-Q      CENP-Q, a CENPA-CAD centromere complex subunit
       0.23   10.8   1.4       0.27   10.5   1.4    1.1  1  SLATT_5     SMODS and SLOG-associating 2TM effector domain fa


Domain annotation for each model (and alignments):
>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.9   5.9e-06     0.013      24      87 ..      91     154 ..      79     159 .] 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.9e-06
        FlxA  24 kQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeek 87 
                 +++k++qk+L+ l es e   +e k ++ +++a I+ l+ ++a   +++ e  + ++++ +e++
  CDO68808.1  91 EELKSAQKELQTLRESAEVLLKEAKWRKAQVEAYIEYLEEEVAAENNEEYEGSSGEESEGEESE 154
                 7899************9999999**9*****************999988877776666666554 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   2.4   6.7e-06     0.015      27      87 ..      69     130 ..      64     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.7e-06
                 SSC.SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHH CS
    Spectrin  27 edl.gkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelne 87 
                 e+l    l evq l + +++  +el+++q+++++l e ae ll+e +  ++++e+ +e l+e
  CDO68808.1  69 EELmQTLLVEVQGLRRNYDRTAEELKSAQKELQTLRESAEVLLKEAKWRKAQVEAYIEYLEE 130
                 444477899*********************************88887777777777776665 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.8   1.6e-05     0.035      22      84 ..      67     132 ..      62     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
    RasGAP_C  22 srennyqellneIakdirnkgrlre...krkeElesleetlktLseknnylesqlesYkayienvl 84 
                 + e   q+ll e++   rn +r  e   + ++El++l+e  + L +  +  + q+e Y +y+e+ +
  CDO68808.1  67 TGEELMQTLLVEVQGLRRNYDRTAEelkSAQKELQTLRESAEVLLKEAKWRKAQVEAYIEYLEEEV 132
                 556666777777777666666665411156889999999999999999999999999999998755 PP

>> She9_MDM33  She9 / Mdm33 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.1   3.2e-05     0.071      46     122 ..      72     154 ..      65     159 .] 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
  She9_MDM33  46 leeakeevreakeayeeaiekrsksqrevneL......LqRkssWspedlerftelyrkdhanekeeeeakeklkeaeakeee 122
                 +++   ev+ ++++y++++e+ +++q+e+++L      L +  +W ++++e + e + ++ a e++ee   ++ +e e +e+e
  CDO68808.1  72 MQTLLVEVQGLRRNYDRTAEELKSAQKELQTLresaevLLKEAKWRKAQVEAYIEYLEEEVAAENNEEYEGSSGEESEGEESE 154
                 5555667888999999999999999999887644444488999******************9999999888888888777665 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   2.8e-05     0.064     174     239 ..      75     138 ..      21     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
     DUF4407 174 gttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaa 239
                     v+G   ++++  ++l+ aq+el++l+++  a+  l++++ ++a++ea ++  +++ +a++++
  CDO68808.1  75 LLVEVQGLRRNYDRTAEELKSAQKELQTLRES--AEVLLKEAKWRKAQVEAYIEYLEEEVAAENNE 138
                 4556899999**********************..77777777777777777777777766666654 PP

>> PIN_2  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   5.4e-05      0.12      11      78 ..      75     143 ..      69     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.4e-05
       PIN_2  11 llksrikkrlilvekal.eliapeeaveeiekhkealvkksklseeeleellelletkikiveeslye.s 78 
                 ll ++++ ++ ++++ + el ++++ ++ +++  e+l+k+ k+ ++++e+ +e le+++   ++++ye s
  CDO68808.1  75 LL-VEVQGLRRNYDRTAeELKSAQKELQTLRESAEVLLKEAKWRKAQVEAYIEYLEEEVAAENNEEYEgS 143
                 55.45555555555444168899999************************************99999844 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.6   0.00011      0.24      41     121 ..      72     148 ..      66     159 .] 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
      CENP-Q  41 LspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassdevlgeasgtvf 121
                  +++l  ++ L++++++  ++l++ +++L++L ++a+ + +e k ++ + + + +  ++e+  +++++ +  +    g+++
  CDO68808.1  72 MQTLLVEVQGLRRNYDRTAEELKSAQKELQTLRESAEVLLKEAKWRKAQVEAYIEYLEEEVAAENNEEYEGSS----GEES 148
                 6788999*******************************99985554444334444333333333333333222....2222 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   0.00012      0.27      80     135 ..      79     130 ..      72     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
     SLATT_5  80 llessknykerAekfhkcaleLselynelrllli..seedlkekykeiskeYeeiLdk 135
                 ++   +ny + Ae++++ ++eL++l ++ + ll+  ++++++  +    + Y e L++
  CDO68808.1  79 VQGLRRNYDRTAEELKSAQKELQTLRESAEVLLKeaKWRKAQ--V----EAYIEYLEE 130
                 5556789***********************999644333322..2....244444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1809  (0.100898); expected 358.6 (0.02)
Passed bias filter:                      940  (0.052429); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1098.80
//
Query:       CDO68809.1  [L=479]
Description: hypothetical protein BN946_scf184805.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-17   63.7   0.3    3.7e-17   62.2   0.3    1.8  1  Integrase_H2C2  Integrase zinc binding domain
    2.1e-06   27.8   0.1      6e-06   26.4   0.1    1.8  1  zf-H2C2         H2C2 zinc finger
    3.9e-05   23.5   0.0    3.9e-05   23.5   0.0    1.7  2  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
  ------ inclusion threshold ------
      0.041   14.1   0.0       0.21   11.8   0.0    2.2  2  rve             Integrase core domain


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.3   8.2e-21   3.7e-17       4      57 ..      58     113 ..      57     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 8.2e-21
  Integrase_H2C2   4 slrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     +lr ++l+++Hd+  agH G +kt +++ r y Wpg+r  v++yvksC++C+ +k+
      CDO68809.1  58 DLRLRVLRSHHDHptAGHWGQNKTQALVLRDYAWPGLRVYVRDYVKSCTQCACAKT 113
                     5899************************************************9997 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   1.3e-09     6e-06       4      39 .]      74     109 ..      72     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.3e-09
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                  H G+nk+ al+ r Y w+g+   v++ ++sC++C+
  CDO68809.1  74 GHWGQNKTQALVLRDYAWPGLRVYVRDYVKSCTQCA 109
                 6**********************************7 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.5       2.3     1e+04      19      34 ..     224     237 ..     215     239 .. 0.68
   2 !   23.5   0.0   8.7e-09   3.9e-05       1      53 [.     411     466 ..     411     467 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
                 EEEEEETTSTGGGTEE CS
      Chromo  19 eYlVKWkglpysentW 34 
                 +Yl  W  ++y ++ W
  CDO68809.1 224 QYL--WIYCNYQQDNW 237
                 555..77778888888 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 8.7e-09
                 EEEEEEEEEEEETTEEC..EEEEEEETTSTG..GGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgle..leYlVKWkglpy..sentWEpeenlekcfqelideFkk 53 
                 ye+ +I+d + d+ +++  l YlV+W g+     e +W  +++l++  qel+  F++
  CDO68809.1 411 YEILEILDFKLDRRRKTckLLYLVRWAGYKGtdAETSWILATELGHV-QELVSDFHR 466
                 677799****999999999**********9964566***********.*******96 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.47   2.1e+03      15      55 ..     143     181 ..     129     186 .. 0.75
   2 ?   11.8   0.0   4.6e-05      0.21      77     118 ..     184     225 ..     182     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.47
         rve  15 vripdgggkayllvvvddfsrlilaealsdemdastvlall 55 
                 ++i+  gg   +l+vvd  +  ++ +++ d  +as +++l 
  CDO68809.1 143 LPIF--GGYTAILIVVDRLTEQAIFIPTHDTLTASELADLF 181
                 4444..556899999***99999999999998888888776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.6e-05
         rve  77 eytskafrefladlgirvsftrpgrpqdnGkvErfhrtlkde 118
                 +++s+ fr + + l++ + ft  ++p+ nG   r ++tl++ 
  CDO68809.1 184 HFVSHFFRSLGKALDMCLHFTSGYHPEGNGQTKRVNQTLEQY 225
                 5899***********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3320.49
//
Query:       CDO68810.1  [L=132]
Description: hypothetical protein BN946_scf184805.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-07   29.8   0.0    1.2e-06   29.1   0.0    1.3  1  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   6.9e-11   1.2e-06      28      80 ..      20      72 ..      10      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 6.9e-11
      zf-RVT 28 appkvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80
                +p ++  +l    +n++p ++ l++ g + +++C+ C qe Et+ H +++Cp 
  CDO68810.1 20 IPRRHANLLVQFRTNHVPLQSYLHRFGRAPDATCPTCLQEPETVAHYLFACPT 72
                78899999999999*************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 913.08
//
Query:       CDO68811.1  [L=392]
Description: hypothetical protein BN946_scf184805.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-30  103.3   0.0    1.5e-29  102.3   0.0    1.5  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
    1.5e-29  102.0   0.1    4.1e-29  100.6   0.0    1.7  2  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    1.5e-19   70.4   0.0    2.3e-19   69.8   0.0    1.2  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    4.8e-06   26.8   0.2    1.9e-05   24.9   0.2    2.1  1  RNase_H      RNase H


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   3.4e-33   1.5e-29       2      95 ..     218     313 ..     217     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 3.4e-33
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---H CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrl 95 
                 p++++++++DAsd++i+++Ls ++e+ge +pi f Sr+lsgae ny+t++kellAi +++k+++hyl+g    + ++tDhknl+y+ ++k l++++
  CDO68811.1 218 PDRQITIKMDASDYAIAGILSITTESGELHPIVFHSRTLSGAELNYNTHNKELLAIFECFKTWHHYLEGsGTpIDIVTDHKNLEYFSTTKLLTPQQ 313
                 8999*****************************************************************7446**************999876554 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   6.4e+03       3      16 ..     111     124 ..     104     133 .. 0.66
   2 !  100.6   0.0   9.2e-33   4.1e-29       2      96 ..     193     287 ..     192     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
  RT_RNaseH_2   3 eeqekafeklkeal 16 
                  ee+++ ++++ ++l
   CDO68811.1 111 EEHQQHVKEVIQRL 124
                  45666666666655 PP

  == domain 2  score: 100.6 bits;  conditional E-value: 9.2e-33
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgr 96 
                  ++ ++++f++lk+a+t  p+L h +pd+++++++DaSd++i+++Ls + + g+++pi f Sr+ls ae ny+t+ kellAi++++k+++hyl+g+
   CDO68811.1 193 DQRCQDSFNALKKAFTFTPILCHWEPDRQITIKMDASDYAIAGILSITTESGELHPIVFHSRTLSGAELNYNTHNKELLAIFECFKTWHHYLEGS 287
                  689******************************************************************************************95 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   5.1e-23   2.3e-19      17     220 ..       1     162 [.       1     163 [. 0.91

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 5.1e-23
                 .-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET................. CS
       RVT_1  17 vdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfs 115
                 +dy+ lnk++ k         + +++p + +              l+  +ka++++k+Dl  a++ v+ +   + +taf+++                 
  CDO68811.1   1 MDYRGLNKITRK---------DRYPLPLISDL-------------LDTPQKARIYTKIDLCHAYNLVRIAPGNKWKTAFRTR----------------- 60 
                 689999999999.........99999999999.............8889*********************************................. PP

                 ........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE........ CS
       RVT_1 116 vrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlft..... 209
                         +g++e  ++p+ + + P+ f+ f+ne++ +l      v +++Y DDili+s+s ee+q+++++v ++l++ +l   ++K     ++     
  CDO68811.1  61 --------YGSFERLVMPFRLSNTPAAFQCFINEVFADLLD----VCIVVYLDDILIYSNSLEEHQQHVKEVIQRLRKFKLYARADKPDHGGVEgegns 147
                 ........9*******************************8....9*************************************9999777755566666 PP

                 ......ESSEEETTE CS
       RVT_1 210 ..v..kseevkyLGv 220
                       +++ ++LG+
  CDO68811.1 148 qlTgtPKRPGHFLGF 162
                 541356666666665 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   4.3e-09   1.9e-05      47     142 ..     269     357 ..     201     358 .. 0.65

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.3e-09
                 HHHHHHHHHHTT.SC.....SEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHH CS
     RNase_H  47 ELsAvieaLkalksd.....ekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAke 140
                 EL A++e  k+ +       + + i+tD k++         ++k  +  ++ ++    + +    lk+   + +++l+wv+gHa vp gNe+aD++Ak+
  CDO68811.1 269 ELLAIFECFKTWHHYlegsgTPIDIVTDHKNLEY-----FSTTKLLTP-QQ-HG----SYSAVRSLKHDRPDLRLTLRWVPGHADVP-GNEAADEAAKA 355
                 5666666655432224444455556666554433.....222222111.11.11....12233344444457889***********9.**********9 PP

                 HH CS
     RNase_H 141 aa 142
                 aa
  CDO68811.1 356 AA 357
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2920.28
//
Query:       CDO68812.1  [L=478]
Description: hypothetical protein BN946_scf184805.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-12   45.5   0.1      2e-11   44.0   0.1    1.8  1  Retrotrans_gag  Retrotransposon gag protein
    3.1e-08   33.5   0.0    6.3e-08   32.5   0.0    1.4  1  DUF4939         Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
       0.84    8.6   7.9        1.7    7.6   7.9    1.4  1  FAM199X         Protein family FAM199X


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1   3.4e-15     2e-11       3      94 ..     207     302 ..     205     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 3.4e-15
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekfl 91 
                     a + l+g A++w++++  ++          s++ ++k+++ +f p +++ q+e++l +lr  +++ +++Y+t+f++la+q++  +    +  +f+
      CDO68812.1 207 AISYLKGMALTWFEPYLLERNSGnlpefLYSYAVFQKELRVNFGPYDVTGQAEHDLENLRMaDNQRIAKYITQFSRLATQVR--WGRTTLRYQFY 299
                     6789***********8877766669**99*****************************************************..*********** PP

  Retrotrans_gag  92 aGL 94 
                     +GL
      CDO68812.1 300 KGL 302
                     **9 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.1e-11   6.3e-08      26     106 ..     165     251 ..     145     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.1e-11
     DUF4939  26 ipfpetfdG.dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi.kkds....pllndyraflaemkrvfGw 106
                 i  p++f+G d  +l  f  q         +tf++d  kvt+ i+ l+G al w  py+ +++s     +l  y  f +e++  fG 
  CDO68812.1 165 IREPDQFNGsDPSKLRSFFTQLELVFKARPRTFNTDEKKVTYAISYLKGMALTWFEPYLlERNSgnlpEFLYSYAVFQKELRVNFGP 251
                 6679****95679*********999999******************************746777433346788999*****999995 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.9   0.00029       1.7     178     277 ..     320     418 ..     314     426 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00029
     FAM199X 178 kqvrnyikehsprqrasstreswkrssyssastsgvsaasssnasmvssassstasvgssaansaanisrahsdsnlssaaerir.dskkrskqrklqq 275
                  ++rn  +    r    ++ ++w  ss +s s+sg s++s+s++   ss+s  + s gs+ ++s +   ra + +  +s+ +  +  + k  k+ kl q
  CDO68812.1 320 EKLRNLAQFLDHRYWERMAEQAWE-SSGGSKSSSGTSGKSTSESKP-SSSSRPSQSSGSTPSTSLSATPRASTGTPKTSSKQATKpYADKLGKDGKLTQ 416
                 555555555555666668888997.566788899999999887654.4444445555666566666677777666555443333314566777777777 PP

     FAM199X 276 ka 277
                   
  CDO68812.1 417 EE 418
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3275.86
//
Query:       CDO68813.1  [L=162]
Description: hypothetical protein BN946_scf184805.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-07   29.6   0.0    5.5e-07   29.4   0.0    1.1  1  DDE_Tnp_4  DDE superfamily endonuclease
     0.0057   16.3   0.0     0.0071   16.0   0.0    1.1  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   6.2e-11   5.5e-07       2      96 ..      46     135 ..      45     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 6.2e-11
   DDE_Tnp_4   2 Dgteipiqrpsnleeraqtysnykkkntlkvlivvdpng.kiifvskgypGsvsDkeilensgllkalkeavkpg.dvilaDkgFklsekllvpykk 96 
                 Dg++i +  p +   ++++  n+k+  + +v ++++ +   +++v  g +Gs++D++++++ + ++       pg  + laD+g+   + llvpy++
  CDO68813.1  46 DGSHIVTAPPLD---ERSASRNRKGGISQNVFATCTLDTlLFTYVLSGIEGSATDSTVFQMARQVDFRV----PGdRYYLADAGYGFVDLLLVPYRG 135
                 99********98...888889************99988625778*******************999944....555*************999*9975 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.9e-07    0.0071       7      87 ..      43     124 ..      38     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.9e-07
   DDE_Tnp_1   7 livDattvrvpgtkedarwgykggkykygy..klhiavdtrsglilsvvi.t.pgnvhdskglkqlldelrpr..kgklvlaDaGYa 87 
                  + D++++ +  +     ++++++ +k g+  ++ + + + +  +  +v+    g+  ds++++   +++++r   ++++laDaGY+
  CDO68813.1  43 GAADGSHIVTAPPL--DERSASRN-RKGGIsqNVFATCTLDTL-LFTYVLsGiEGSATDSTVFQM-ARQVDFRvpGDRYYLADAGYG 124
                 67899999998888..33333433.356666588888888875.566666368**********99.999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 1076.13
//
Query:       CDO68814.1  [L=227]
Description: hypothetical protein BN946_scf184805.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.05   13.7   0.2        9.1    6.4   0.0    2.2  2  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.001        18      84     109 ..     105     131 ..     101     139 .. 0.90
   2 ?    6.4   0.0   0.00051       9.1      68     108 ..     168     208 ..     137     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.001
  Acetyltransf_6  84 Avalglrsgdrlyywlggy.dpelakl 109
                     +++lgl  ++r+ +w+g y dp+++k+
      CDO68814.1 105 GFVLGLAERQRWGLWYGKYsDPDFEKY 131
                     799********************9876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00051
  Acetyltransf_6  68 rgalrlyvlrldgrpvAvalglrsgdrlyywlggydpelak 108
                     r + rl+ +r+  +  A++++lr+++++  +++  dpel k
      CDO68814.1 168 RLRRRLLPVRVSKQEEAYVFVLRDDGTARGMIAHTDPELMK 208
                     5566788888888889*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1524.67
//
Query:       CDO68815.1  [L=260]
Description: hypothetical protein BN946_scf184805.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  116.4   0.1    3.2e-33  115.1   0.1    1.5  1  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
    3.2e-10   39.6   0.7    4.5e-08   32.7   0.0    2.7  3  Prenyltrans      Prenyltransferase and squalene oxidase repea
     0.0066   15.6   0.0      0.029   13.5   0.0    1.8  2  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
  ------ inclusion threshold ------
        1.7    7.9   2.8        2.4    7.3   2.8    1.2  1  AurF             P-aminobenzoate N-oxygenase AurF


Domain annotation for each model (and alignments):
>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1   7.2e-37   3.2e-33       9     174 ..      84     250 ..      77     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 7.2e-37
  SQHop_cyclase_N   9 lslqkpdGhWvgeLeanvtitaeyillrefl.geddeeeeekiakylrsqqredGgWelypggpgdlsttveaYlALkllGdspdapalarAre 101
                       +lq +dGhW g     + +    ++   +   + + ee+ +i +yl ++ +edGgW+++ +g++ ++ t   Y+A+++lG++pd+p  ++Ar 
       CDO68815.1  84 KHLQVEDGHWPGAYGGPMFLIPGLVIGSYVTgMPFQLEERLEIIRYLFNHANEDGGWGIHVEGHSTVFGTALNYCAIRILGVKPDHPVAVKARG 177
                      56899999999999998888888888888887888999******************************************************** PP

  SQHop_cyclase_N 102 filarGGvakvrvfTrilLalfglvpweavpalPpelmlLPkwfpfniykfsswaRttivPllilsakkpvak 174
                      ++++ GG++ v ++ +++L+++ +++w++  ++P+el ++P+w+pf+  k+  ++R +++P+ +l+a ++ a+
       CDO68815.1 178 CLHKLGGATGVPSWGKFWLSVLNVYDWDGNHMIPAELWVFPDWLPFHPHKWWIHTRNVYLPMGYLYAIRFKAE 250
                      *******************************************************************998875 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0053        24      12      27 ..      85     100 ..      77     114 .. 0.84
   2 !   32.7   0.0     1e-11   4.5e-08       5      44 .]     125     164 ..     121     164 .. 0.94
   3 ?   -3.9   0.1       2.8   1.3e+04      19      26 ..     190     197 ..     190     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0053
                  HHSHTTS-BBSSTTSS CS
  Prenyltrans  12 scQnedGGwggrpgse 27 
                    Q edG+w g +g++
   CDO68815.1  85 HLQVEDGHWPGAYGGP 100
                  5688*******99985 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1e-11
                  HHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   5 kavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  +++++L ++ nedGGwg + +++s++++t+ +++a  +lG
   CDO68815.1 125 EIIRYLFNHANEDGGWGIHVEGHSTVFGTALNYCAIRILG 164
                  89*********************************99987 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.8
                  -BBSSTTS CS
  Prenyltrans  19 Gwggrpgs 26 
                  +wg  + s
   CDO68815.1 190 SWGKFWLS 197
                  79998876 PP

>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.5e-06     0.029     156     231 ..      71     145 ..      62     152 .. 0.82
   2 ?   -0.2   0.0     0.091   4.1e+02     185     219 ..     148     182 ..     145     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-06
                      TTSHHHHHHHHHHHHHS-TTS----SSBSSHHHHHHHHHHHHHHTT--TTSHHHHHHHHHHHTT--TTSSBB--GG CS
  SQHop_cyclase_C 156 edsealkraveylkkeqepdGsWfGrWGvnyiyGtwsvlsalaavgedleepvirkavdWlksvqnedGGWGesae 231
                      ++ ea++++  ++k+ q +dG W G +G          +++  + g++ + +   + +++l ++ nedGGWG ++e
       CDO68815.1  71 NALEAARNGYRFFKHLQVEDGHWPGAYGGPMFLIP-GLVIGSYVTGMPFQLEERLEIIRYLFNHANEDGGWGIHVE 145
                      5567889999*****************97654444.455677788999888888899***************8766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.091
                      SHHHHHHHHHHHHHHTT--TTSHHHHHHHHHHHTT CS
  SQHop_cyclase_C 185 nyiyGtwsvlsalaavgedleepvirkavdWlksv 219
                        ++Gt    +a++ +g++ ++pv  ka   l++ 
       CDO68815.1 148 STVFGTALNYCAIRILGVKPDHPVAVKARGCLHKL 182
                      56788888888888888888888888777666655 PP

>> AurF  P-aminobenzoate N-oxygenase AurF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.8   0.00054       2.4      26      56 ..     202     230 ..     190     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00054
                 ......-----TTS-SS-GGGSGGGGSCHHH CS
        AurF  26 iDwdaplaqedddrwdlppellpLygtplwq 56 
                 +Dwd       ++ w++ p++lp++ +++w 
  CDO68815.1 202 YDWDGNH-MIPAELWVF-PDWLPFHPHKWWI 230
                 69**997.677788888.************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1853.85
//
Query:       CDO68816.1  [L=132]
Description: hypothetical protein BN946_scf184805.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00039   19.6   0.0    0.00048   19.3   0.0    1.1  1  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain


Domain annotation for each model (and alignments):
>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.7e-08   0.00048       2      71 ..      44     117 ..      43     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.7e-08
                      -HHHHHHHHHHHHHHHT--TT...-HHHHHHHHHHHTT-B-S.--GGGGT-TTS---BB-SSSS-TT--BHHHH CS
  SQHop_cyclase_C   2 sPvWdtalavlalleagveae...eealkkaleWllekqvlv.kGdWkvkrpevepgGwafefaneyyPdvddt 71 
                      s +Wd +++++al+e+g ++e   +e++ +al+Wl + q+++ +  +++  ++ + g w f  + + y   d t
       CDO68816.1  44 SQLWDIGFTAQALVESGLAHEdefRESVFRALRWLEHAQIRDnPKHFTTAYRHPTKGAWPFSTRTQGYTVSDCT 117
                      679************99775512268999***********963778888889999999*999988888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 979.71
//
Query:       CDO68817.1  [L=811]
Description: hypothetical protein BN946_scf184805.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00024   20.7  11.6       0.25   11.1   0.0    5.0  4  DUF3060   Protein of unknown function (DUF3060)


Domain annotation for each model (and alignments):
>> DUF3060  Protein of unknown function (DUF3060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.9   0.00011         2       7      47 ..     181     227 ..     175     231 .. 0.73
   2 !    3.9   0.5    0.0024        43       8      47 ..     236     275 ..     230     284 .. 0.65
   3 !   11.1   0.0   1.4e-05      0.25       6      48 ..     290     332 ..     288     340 .. 0.90
   4 ?   -1.0   0.0     0.084   1.5e+03      32      46 ..     351     365 ..     348     370 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00011
     DUF3060   7 tvtltGeCeavtVs......GssNtVtvdsvdkitvsGldNtVtyks 47 
                 +v ++G+ ++v+V+        s  Vt d  d++tv+G d  V+y++
  CDO68817.1 181 EVVVKGNHDHVNVHrrslweSRSSEVTRDDHDRVTVEGHDDHVHYHD 227
                 5666666666666522222235789*******************986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0024
     DUF3060   8 vtltGeCeavtVsGssNtVtvdsvdkitvsGldNtVtyks 47 
                 v ++G++++v V+ s    +    dk+ v G++ tV++++
  CDO68817.1 236 VVVKGDNDHVHVQRSPSPHHHHHNDKVIVKGNHDTVHVHR 275
                 6666666666666666666666667788888888888554 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 1.4e-05
     DUF3060   6 NtvtltGeCeavtVsGssNtVtvdsvdkitvsGldNtVtyksG 48 
                  +v ++G+ ++v+V+G s   +     ++ v G++  V+++++
  CDO68817.1 290 DKVVVKGNHDHVNVHGRSPAPHHHHGHTVVVKGNNEHVNVRRS 332
                 6899**********************************98764 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.084
     DUF3060  32 dkitvsGldNtVtyk 46 
                  k+ v G d  V+++
  CDO68817.1 351 AKVVVNGDDDHVKIH 365
                 445566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 5302.32
//
Query:       CDO68818.1  [L=452]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   21.1   0.1       0.08   12.4   0.0    2.7  2  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.5e-06      0.08      13      49 ..      79     114 ..      69     138 .. 0.79
   2 !   10.7   0.0   1.5e-05      0.26      78     247 ..     107     351 ..     105     384 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.5e-06
                 ECETTSCGGSHHHHHHHHHHHT-SEEEEEEECTGGTT CS
   Cellulase  13 lstswgnpyttkalidevkdagfntvRlpvswgelve 49 
                 ++ +w++   t++   ++++ag+ntvR+pv  + +  
  CDO68818.1  79 FNKHWSTW-FTQDHVNQLRAAGINTVRIPVILDHHAL 114
                 56677765.58999999**************988873 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 1.5e-05
                 EEEEEESSTTTCSSSS.TTTTHHHHHHHHHH.......HHHHHHHHHTTTTT....TEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTT CS
   Cellulase  78 vildiHseegwltkad.gnssedtaeeffkk.......lwtqiAerykknde....vvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgp 164
                 vild H  +g+ t+++ ++++ ++  ef+++       +wt++ + ++  d+    v ++e +NEP  n +++           ++ ++++++IRav  
  CDO68818.1 107 VILDHHALPGVQTPGQsFTGHCTSDVEFYTEynfhralVWTAVMTALSHLDPsfssVFAIEAVNEPIMNAQQT-------PGYGDFQKNFVEVIRAVEL 198
                 9*****9977744444045555556677777888889999999998875544333399**********77663.......5588899**********99 PP

                 SSEEEEECHH............................................................................HHTBHHHHHCTSG CS
   Cellulase 165 nrliivegns............................................................................wsgnldgavlndP 187
                    i v+g s                                                                            w+ n       +P
  CDO68818.1 199 ILGIPVPGLSldvkvstsnftsalsatvsasklfnkevksalaeavpilvelgfelalsaifnfnmaasplsktrsplvsnfmdinWQYNDPP----NP 293
                 888888888788888888888887777777777777777777777777777777777777777777777766666665444444443333322....22 PP

                 SS.SSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESS CS
   Cellulase 188 nd.sqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgs 247
                  d       y+ H Y       + +        +   +l+ +++ +   + p++ gE+G+ 
  CDO68818.1 294 ADaAIGPQGYDNHLYYNFGGVADPN---PDAYLTSICNLQRVQNDAALGNSPLWFGEWGLP 351
                 1112233346667665333333222...222222234566666677777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3342.15
//
Query:       CDO68819.1  [L=308]
Description: hypothetical protein BN946_scf184805.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-24   85.2   0.0    5.5e-24   84.6   0.0    1.2  1  Lipase_3       Lipase (class 3)
     0.0019   18.8   0.1     0.0023   18.5   0.1    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.047   13.3   0.1      0.074   12.7   0.1    1.2  1  Esterase       Putative esterase
      0.082   12.5   0.0       0.11   12.1   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   1.2e-27   5.5e-24       2     140 ..     110     249 ..     109     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 1.2e-27
                 EEE----..------------EEE-HHHH-G...TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS-- CS
    Lipase_3   2 vafRGte..sakdwltdldfslteakellek...eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenekk 95 
                 v+ +Gt+  +++ ++td d++lt +++ l     ++++vh+gf +a   +++ +vl+ +++ ++ y + ++++tGHSLG+a++lL a+++  + ++   
  CDO68819.1 110 VSHQGTNpkEIEPLVTDGDAELTALDSALFPglsSSIEVHEGFADAQA-NTAASVLQAVQKAMNMYGTKNVALTGHSLGAAISLLDAIYIPLHIPS--A 205
                 788999999999*************9987778999***********99.*********************************************76..* PP

                 -EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3  96 kvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                 kvt + +G Prvgn++fa++vdsq  + v+++ n++D++P +p++
  CDO68819.1 206 KVTFIGYGLPRVGNQAFANYVDSQPIS-VTHINNKEDFIPIMPGQ 249
                 **********************88888.***************86 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   5.2e-07    0.0023      35      87 ..     140     203 ..      73     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.2e-07
                    TTSTS-GGCS--HHHCHHH...HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6  35 pGhGrsdpppldledladl...aalldelaa.....gggpvvlvGHSlGGalalaaapla....l 87 
                    pG  +s   + +++d+ +    a +l+++ +     g+++v l GHSlG+a++l+ a +     +
     CDO68819.1 140 PGLSSSIEVHEGFADA-QAntaASVLQAVQKamnmyGTKNVALTGHSLGAAISLLDAIYIplhiP 203
                    4444667777788663.222434455555447779********************4444454442 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.6e-05     0.074     101     138 ..     162     200 ..     149     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHCSTT CS
    Esterase 101 eLlplldanfrtapdg.ravaGqSmGGlgALilalkhpd 138
                  +l+ +++ ++ + ++  a++G+S+G+ ++L+ a++ p 
  CDO68819.1 162 SVLQAVQKAMNMYGTKnVALTGHSLGAAISLLDAIYIPL 200
                 68999***********9***************9998875 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.11      55      92 ..     159     196 ..      94     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                    SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1  55 gtasvaddldrildalgddkltlvGhSmGGmialayaa 92 
                    + asv   ++++++ +g ++++l GhS+G +i+l  a 
     CDO68819.1 159 TAASVLQAVQKAMNMYGTKNVALTGHSLGAAISLLDAI 196
                    677888889999*********************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2055.06
//
Query:       CDO68820.1  [L=317]
Description: hypothetical protein BN946_scf184805.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2244.33
//
Query:       CDO68821.1  [L=92]
Description: hypothetical protein BN946_scf184805.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 651.07
//
Query:       CDO68822.1  [L=362]
Description: hypothetical protein BN946_scf184805.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-89  298.3   0.0    8.4e-89  297.4   0.0    1.3  1  DAGAT     Diacylglycerol acyltransferase


Domain annotation for each model (and alignments):
>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.4   0.0   4.7e-93   8.4e-89       4     292 ..      81     356 ..      77     360 .. 0.97

  Alignments for each domain:
  == domain 1  score: 297.4 bits;  conditional E-value: 4.7e-93
       DAGAT   4 fltklwlllvLyavwllydidspkkggyrsnwvrrlavlkyfaeYfPvkLvktaeletdrnYliGyhPhgilsvgafvalatdatgvkekfpgirfnla 102
                  +++lw +l+ y++w+ly  +sp +gg+ s w+r ++ ++yfa+Y+P +  kt el++dr Y++GyhPhgi+++ga +++at++tg++  fpgi ++l 
  CDO68822.1  81 SFPPLWPILAAYMIWVLYIDKSPEHGGRLSPWFRSMKFWRYFADYYPASFLKTCELPPDRPYVFGYHPHGIIGMGAICTFATESTGFSAAFPGIIPHLL 179
                 46899********************************************************************************************** PP

       DAGAT 103 tLagqfrtpfrreillllGlievsresieyvLdkeekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykqvenpk 201
                 tLa++fr+pf r+i+l +G++ vs++s   +L+k + G+++ +vvGGa+e+l+ahpg+  ltL kr           adLvPv+sfGend+++q+ n+k
  CDO68822.1 180 TLATNFRVPFYRDIILAMGVCSVSKQSCSNILKK-GPGNSITIVVGGAAESLSAHPGTADLTLRKR-----------ADLVPVFSFGENDIFQQMPNEK 266
                 ********************************87.578*************************998...........8********************* PP

       DAGAT 202 gsklrkvqeklkkvlglsppilyGrglfnsltlGllPfrkpittvvGkPievtkteePtkeeidelhakYveaLaeLfeehkekfgvskdt 292
                 g++l ++q+k+++v+g+++p+++Grgl n + lGl+P+rk i  v+G+Pi+v + ++Pt eei ++ +kY+++L+ ++  +k+ f  ++  
  CDO68822.1 267 GTTLYNLQKKFQNVFGFTLPLFHGRGLLN-YNLGLMPYRKRIVAVIGHPIHVVQCDKPTLEEIMQVQQKYIDELMWIWHTYKDEFARTRRR 356
                 *****************************.99***************************************************99855555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2755.22
//
Query:       CDO68823.1  [L=815]
Description: hypothetical protein BN946_scf184805.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-97  321.6   0.0    1.9e-47  161.0   0.0    2.4  2  AAA              ATPase family associated with various cellul
    7.2e-26   89.7   7.3    1.3e-12   47.3   0.9    2.9  2  AAA_lid_3        AAA+ lid domain
    6.5e-22   77.5   0.4    3.6e-21   75.1   0.3    2.2  2  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    2.8e-14   53.2   0.0      6e-06   26.1   0.0    2.9  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    6.8e-14   52.3   0.0    1.6e-07   31.6   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    7.7e-12   45.6   0.0    6.1e-06   26.5   0.0    2.6  2  AAA_33           AAA domain
    1.2e-11   44.2   0.0    2.9e-11   43.0   0.0    1.7  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
    1.4e-11   44.5   0.6    2.4e-05   24.3   0.1    3.9  2  AAA_5            AAA domain (dynein-related subfamily)
    7.3e-11   42.7   0.1     0.0017   18.8   0.0    4.4  2  AAA_16           AAA ATPase domain
    1.6e-09   37.4   0.1     0.0014   17.9   0.0    2.5  2  TIP49            TIP49 P-loop domain
    3.5e-09   37.0   0.3      0.021   15.1   0.0    4.1  2  AAA_22           AAA domain
    3.7e-07   29.8   0.3       0.03   13.7   0.0    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    5.3e-07   30.0   0.0      0.022   15.2   0.0    2.7  2  RNA_helicase     RNA helicase
    7.1e-07   29.3   0.0      0.014   15.4   0.0    3.0  3  AAA_14           AAA domain
      8e-07   29.7   0.0       0.04   14.4   0.0    2.9  2  AAA_18           AAA domain
    8.3e-07   28.9   0.0      0.023   14.4   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
    1.7e-06   27.5   0.6       0.56    9.5   0.0    3.4  3  ATPase           KaiC
    2.7e-06   27.3   1.0    7.6e-05   22.6   0.1    3.1  2  Vps4_C           Vps4 C terminal oligomerisation domain
    4.1e-06   26.1   0.2      0.013   14.6   0.0    2.2  2  Parvo_NS1        Parvovirus non-structural protein NS1
    4.2e-06   26.6   0.1      0.081   12.6   0.0    3.0  2  AAA_24           AAA domain
    5.3e-06   26.1   0.1      0.023   14.2   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    6.6e-06   25.8   1.3       0.75    9.3   0.0    3.6  3  AAA_25           AAA domain
    7.7e-06   25.3   0.0     0.0038   16.4   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
    8.7e-06   25.5   0.0       0.22   11.2   0.0    3.1  2  Sigma54_activat  Sigma-54 interaction domain
    1.5e-05   25.5   0.0      0.054   14.0   0.0    3.7  2  ABC_tran         ABC transporter
    1.9e-05   24.9   0.0       0.11   12.7   0.0    2.6  2  AAA_28           AAA domain
      2e-05   24.5   0.0      0.099   12.5   0.0    2.4  2  Bac_DnaA         Bacterial dnaA  protein
    0.00011   22.6   0.0        0.5   10.8   0.0    3.1  2  AAA_17           AAA domain
    0.00013   22.0   0.0       0.28   11.2   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00017   21.1   0.4       0.44   10.0   0.0    2.4  2  PhoH             PhoH-like protein
    0.00019   21.3   0.0       0.79    9.6   0.0    2.6  2  AAA_3            ATPase family associated with various cellul
    0.00028   21.0   0.0      0.086   12.8   0.0    2.5  2  ResIII           Type III restriction enzyme, res subunit
    0.00034   20.5   0.9          1    9.1   0.0    2.9  3  AAA_11           AAA domain
    0.00057   19.2   0.0        1.1    8.4   0.0    2.5  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00059   19.8   0.2          2    8.3   0.0    3.1  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0012   18.8   0.1     0.0029   17.6   0.1    1.6  1  Molydop_binding  Molydopterin dinucleotide binding domain
     0.0018   18.0   0.8          2    8.1   0.0    2.8  2  AAA_30           AAA domain
     0.0019   18.0   0.0        0.8    9.4   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0025   17.7   0.3        1.2    9.0   0.0    2.9  2  NACHT            NACHT domain
     0.0027   17.0   0.0        1.6    8.0   0.0    2.5  2  Zeta_toxin       Zeta toxin
     0.0029   17.1   0.0     0.0075   15.8   0.0    1.6  1  UFD1             Ubiquitin fusion degradation protein UFD1
     0.0043   17.2   0.0        4.9    7.3   0.0    2.6  2  Sigma54_activ_2  Sigma-54 interaction domain
     0.0043   16.3   0.0       0.63    9.2   0.0    2.3  2  NB-ARC           NB-ARC domain
     0.0051   17.2   2.0        3.9    7.8   0.0    3.5  3  AAA_19           AAA domain
     0.0087   15.5   0.1        2.4    7.5   0.0    2.3  2  IPT              Isopentenyl transferase
  ------ inclusion threshold ------
       0.03   13.4   0.0        1.3    8.0   0.0    2.4  2  T2SSE            Type II/IV secretion system protein
      0.043   13.5   0.0        8.3    6.1   0.0    2.8  2  Cytidylate_kin   Cytidylate kinase
      0.057   13.1   0.0        1.8    8.2   0.0    2.7  2  Zot              Zonular occludens toxin (Zot)
      0.077   12.9   0.5         15    5.5   0.0    3.4  3  NTPase_1         NTPase
       0.22   10.7   0.3         18    4.4   0.0    3.0  3  PIF1             PIF1-like helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   0.0   5.3e-50   1.9e-47       1     131 [.     245     374 ..     245     375 .. 0.97
   2 !  158.3   0.0   3.5e-49   1.3e-46       1     132 []     518     651 ..     518     651 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 5.3e-50
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l+yGppGtGKTl+a+ava+e+g+ f+ i+g+e++sk+ gese+++r+ f+ea++++ psi+fiDEid++a++r++++ e+e+rvv+qLlt +dg+k +
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNS-PSIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKAR 342
                 69******************************************************9.****************************************7 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s+v+v++atnrp+++dpal+r gRfdr++ i+
  CDO68823.1 343 -SNVVVMAATNRPNSIDPALRRfGRFDREVDIG 374
                 .66*************************99875 PP

  == domain 2  score: 158.3 bits;  conditional E-value: 3.5e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl+yGppGtGKTllaka+a+e++++f++i+g+ell +++gese+++r++f++a++ a p+++f+DE+d++ak+r   sg++ + ++rv+nq+lte+dg+
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQANFISIKGPELLTMWFGESEANVRDVFDKARAAA-PCVMFFDELDSIAKARggsSGDAGGAGDRVLNQILTEMDGM 615
                 79******************************************************9.*****************9999999***************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 + k++ v++igatnrpd++dpallr gR+d+ i+i+l
  CDO68823.1 616 NVKKN-VFIIGATNRPDQIDPALLRpGRLDQLIYIPL 651
                 **755.****************************985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.9   3.6e-15   1.3e-12       1      40 [.     397     436 ..     397     443 .. 0.93
   2 !   45.1   0.7   1.8e-14   6.5e-12       1      39 [.     673     712 ..     673     734 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 3.6e-15
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitm 40 
                 dvdl+++A+ T+Gy+G Dlaalc eAa+  +r++++ i+ 
  CDO68823.1 397 DVDLEQIAADTHGYVGSDLAALCSEAAMQQIREKMDLIDL 436
                 9***********************************9874 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 1.8e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgike.it 39 
                 dvdl  LA+ T+G+SGADl ++c++Aa lA+r++i++ i 
  CDO68823.1 673 DVDLGFLAKHTHGFSGADLTEICQRAAKLAIRESIEAdIR 712
                 8********************************9996565 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.3     1e-23   3.6e-21       1      83 [.      29     109 ..      29     111 .. 0.95
   2 ?   -1.6   0.0       8.9   3.2e+03      28      53 ..     149     175 ..     137     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1e-23
                 CEEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEEC.CCC.EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE CS
     CDC48_N   1 rLrVaeap.qedvgrgivridpedmeelglepgdvveieg.krk.TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrka 83 
                 rL+V+ea  +   +++++ ++p++me+l+l++gd++ ++g kr+ Tv i++++++   ++g+I+m++v+R+n++v++Gd V V+++
  CDO68823.1  29 RLIVDEATsD---DNSVATMNPATMERLQLFRGDTIIVRGkKRHdTVLIALSSDDV--EEGKIQMNKVARNNLRVKLGDMVNVHPC 109
                 79******88...***************************88889********977..47************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 8.9
                 TS-TTSEEEEECCCCEE.EEEEEBSTT CS
     CDC48_N  28 glepgdvveiegkrkTv.aivwpaepe 53 
                  +++gd+  ++g  +Tv  +v++ +p 
  CDO68823.1 149 PVRKGDTFLVRGGMRTVeFKVIETDPA 175
                 4899********666775778777665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.7e-08     6e-06      36     101 ..     245     318 ..     239     366 .. 0.79
   2 !   23.8   0.0   8.6e-08   3.1e-05      34      69 ..     516     551 ..     479     589 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.7e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsrave 101
                 +l+yGpPG Gkt +a+ +a+e g+ +    gP +      e +++l   + + e++   ++fidei  ++++ e
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEImskmagESESNLRKAFEEAEKNspSIIFIDEIDSIAPKRE 318
                 89******************************883322222344566666555554336*******99988766 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 8.6e-08
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                   vl+yGpPG Gkt lak ia+e ++++ +  gP l
  CDO68823.1 516 KGVLFYGPPGTGKTLLAKAIANETQANFISIKGPEL 551
                 569**************************9999976 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.6e-10   1.6e-07       6     107 ..     245     340 ..     240     352 .. 0.84
   2 !   17.6   0.0   8.9e-06    0.0032       6     110 ..     518     619 ..     513     629 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4.6e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 il+ gp g+Gkt++a+a+a+   +     +  ++  e++     +   +++   +++  +ae++   i+++DEid i+pk e+++ +v r  V+  LL 
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGA----FFFLINGPEIMS----KMAGESESNLRKAFEEAEKNSpsIIFIDEIDSIAPKrEKTNGEVER-RVVSQLLT 334
                 899******************995....9***********....77777777777888888887788*************5555666655.68889999 PP

                 HHH--E CS
       AAA_2 102 ileggt 107
                 +++g +
  CDO68823.1 335 LMDGLK 340
                 *99865 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.9e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdL 99 
                 +l+ gp g+Gkt+laka+a+  ++    ++i +   ell+    e+e  v     ++    +a+   + ++DE+d i++    +s  a   ++ V++ +
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQA----NFISIKGPELLTmwFGESEANVRDVFDKA----RAAAPCVMFFDELDSIAKArggSSGDAGGAGDRVLNQI 608
                 799*****************9995....9****999999944233333333333332....233345************99555555556677899999 PP

                 HHHHH--EE-- CS
       AAA_2 100 Lqileggtltd 110
                 L  ++g ++++
  CDO68823.1 609 LTEMDGMNVKK 619
                 99999988875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.7e-08   6.1e-06       2     120 ..     245     392 ..     245     410 .. 0.73
   2 !   16.4   0.0   2.2e-05    0.0078       2      42 ..     518     560 ..     518     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.7e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt............................dytrvldrlyqilnelarkalsag 70 
                 +l+ G+pG+GK+  a+ +++++g  ++l++ ++++++++g+ + +++                               +v+ r+  +l  l  + l+a+
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGafFFLINGPEIMSKMAGESESNLRkafeeaeknspsiifideidsiapkrekTNGEVERRVVSQLLTLM-DGLKAR 342
                 689*********************999******99999995555444556666677777999999999988875433346666666664555.678899 PP

      AAA_33  71 rnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaa 120
                  nv++ a   +++  +  l+ + r++ +v i + ++  ++   R++ ++ 
  CDO68823.1 343 SNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILRIHTKNM 392
                 99888888888888888888887788777776666666666666665555 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.2e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdq 42 
                 vl+ G+pG+GK+ la+ ++++++  ++ +  ++l+++ fg+ +
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQanFISIKGPELLTMWFGESE 560
                 799****************999988888888999888888544 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   8.1e-14   2.9e-11       2      63 ..     130     194 ..     129     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 8.1e-14
                 .SCCCCH.HHHCCCTT..EEE-TTEEEEECCTCCCEEEEEEEECCCCSCEEECTSCCEEESTTCC CS
     CDC48_2   2 idgdema.ylkrqFlg..rpvtkGdlvvfefkgqeiklvVvstePkgpvgitetTeielgtkpve 63 
                 ++g+ ++ ylk +Fl   rpv kGd++ ++  +++++++V +t+P++ +++  +T i+ + +pv+
  CDO68823.1 130 LSGNIFDvYLKPYFLEayRPVRKGDTFLVRGGMRTVEFKVIETDPAEYCIVAQDTVIHTEGDPVK 194
                 579999******************************************************99997 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   6.8e-08   2.4e-05       2     136 ..     245     363 ..     244     365 .. 0.78
   2 !   15.6   0.0   3.4e-05     0.012       2      34 ..     518     550 ..     517     639 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.8e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleerrll 95 
                 +l+ GppGtgK+ +a+ +a  +++ ++ +++++ +++     + ++             +a++     +++i+++DE++ + ++  ++ +   e+r ++
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNL------------RKAFEeaeknSPSIIFIDEIDSIAPKR-EKTNGEVERRVVS 330
                 79*******************************9987554444444............33333333789**********999875.5666777777777 PP

                 ..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  96 leeggelvkaknddllerfrviatanpldrslnelspalrs 136
                   ++ +l++  +  + +++ v+a++n+++    +++palr+
  CDO68823.1 331 --QLLTLMDGLK--ARSNVVVMAATNRPN----SIDPALRR 363
                 ..7777776665..345599999999998....99999986 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.4e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltr 34 
                 vl  GppGtgK+ la+ +a  +++++  + +++
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQANFISIKGPE 550
                 899*****************9999987776665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-05     0.012      20      63 ..     238     278 ..     214     348 .. 0.65
   2 !   18.8   0.0   4.7e-06    0.0017      25      63 ..     516     551 ..     508     612 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-05
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                     p+ +l +G++G+GK+ ++r++++   ++g++f+  +  + 
  CDO68823.1 238 GIKPPRGILMYGPPGTGKTLMARAVAN---ETGAFFFLINGPEI 278
                 4444699******************96...55555654444444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.7e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                   vl++G++G+GK+ l+++++++ +++   f++ k  +l
  CDO68823.1 516 KGVLFYGPPGTGKTLLAKAIANETQAN---FISIKGPEL 551
                 78*******************977777...777777776 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     4e-06    0.0014      51     107 ..     243     294 ..     235     348 .. 0.79
   2 !   16.7   0.0   9.1e-06    0.0032      42      97 ..     507     560 ..     505     570 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrksi 107
                 r++L+ Gp+gtGkt +a a+++e g    f  ++g e+ s     +e    +lrk+ 
  CDO68823.1 243 RGILMYGPPGTGKTLMARAVANETG--AFFFLINGPEIMSKMAGESES---NLRKAF 294
                 89*********************99..78999*******998887774...555555 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  42 likekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 +ik +    ++vL+ Gp+gtGkt la ai++e      f++++g e+ ++    +e
  CDO68823.1 507 FIKYGMSPSKGVLFYGPPGTGKTLLAKAIANETQ--ANFISIKGPELLTMWFGESE 560
                 5666666789*********************975..78999999998876655555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   0.00018     0.065       8      43 ..     245     271 ..     240     352 .. 0.70
   2 !   15.1   0.0   5.8e-05     0.021       9      41 ..     519     550 ..     513     574 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00018
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                 ++ +G++GtGKT+ +r ++++          ++ ++
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANET---------GAFFF 271
                 6789***************997.........33333 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.8e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpe 41 
                 + +G++GtGKT+l++ ++++ + ++++  ++pe
  CDO68823.1 519 LFYGPPGTGKTLLAKAIANETQ-ANFISIKGPE 550
                 679****************984.3333334444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1    0.0001     0.036      25      42 ..     245     262 ..     236     266 .. 0.89
   2 !   13.7   0.0   8.4e-05      0.03      24      43 ..     517     536 ..     502     540 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +l++GppG+GKt++a+++
    CDO68823.1 245 ILMYGPPGTGKTLMARAV 262
                   8**************987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.4e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    +l++GppG+GKt+lak+++
    CDO68823.1 517 GVLFYGPPGTGKTLLAKAIA 536
                   689**************985 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00061      0.22       1      28 [.     245     272 ..     245     313 .. 0.83
   2 !   15.2   0.0     6e-05     0.022       1      27 [.     518     547 ..     518     588 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00061
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklkl 28 
                   i++yGp+g+GK+++a+ +a++    + l
    CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGAFFFL 272
                   689**************99987765544 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...k 27 
                   +++yGp+g+GK++lak +a++ + ++   k
    CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQANFisiK 547
                   689***************999987764432 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-05     0.014       5      77 ..     245     314 ..     242     354 .. 0.75
   2 ?   -1.7   0.0       7.9   2.8e+03      54     109 ..     421     472 ..     392     482 .. 0.70
   3 !   10.2   0.0    0.0016      0.57       5      78 ..     518     588 ..     515     627 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqevp 77 
                 +++ G+  +GKT +++ +++e       ++ in  +   k++ ++e +l +++ e  +++  +++f+DEi  + 
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETG---AFFFLINGPEIMSKMAGESEsNLRKAFEEA-EKNSPSIIFIDEIDSIA 314
                 6788999************9998...888999999988887777662444555554.55599********9884 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 7.9
      AAA_14  54 elileklkeekktylflDEiqevpewekalkslvdegknldvivtGSnskllskei 109
                 e+ +++++e k+ ++ lDE     e+ + l   +d+    ++ +  Sn + l + +
  CDO68823.1 421 EAAMQQIRE-KMDLIDLDEDTIDAEVLDSLGVTMDNF---RFALGTSNPSALRETV 472
                 444555544.888999999888888888888888855...7777777777776655 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0016
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 ++  G+  +GKT l+k +++e      +++ i+  +  +  + ++e + + +++k+++    ++f+DE   + +
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQ---ANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVMFFDELDSIAK 588
                 6678999***********98877...7777777777666666666555555555544557899*****988755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00061      0.22       1      25 [.     245     287 ..     245     353 .. 0.67
   2 !   14.4   0.0   0.00011      0.04       1      35 [.     518     570 ..     518     591 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00061
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................g 25 
                 Il  G+pG+GKt +a+++++++ +f                  
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETgAFfflingpeimskmagesE 287
                 7889***************998555776666555444444442 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 0.00011
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................gvnlrdvaken 35 
                 +l  G+pG+GKt lak++++++ ++                   n+rdv+ + 
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETqANfisikgpelltmwfgesEANVRDVFDKA 570
                 6789**************99985445777777777777777766777766654 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00041      0.15      48      70 ..     243     265 ..     232     347 .. 0.83
   2 !   14.4   0.0   6.4e-05     0.023      48      72 ..     516     540 ..     508     547 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00041
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                  +i++ Gp+G+GK+ +a a++ e
  CDO68823.1 243 RGILMYGPPGTGKTLMARAVANE 265
                 5799***************9876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.4e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgveav 72 
                 +++++ Gp+G+GK+ la a++ e+ 
  CDO68823.1 516 KGVLFYGPPGTGKTLLAKAIANETQ 540
                 67999***************99865 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0016      0.56      15      37 ..     238     260 ..     231     268 .. 0.86
   2 ?    4.8   0.0     0.044        16     111     156 ..     290     341 ..     273     364 .. 0.66
   3 !    9.4   0.0    0.0017       0.6      10      38 ..     506     534 ..     483     544 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0016
      ATPase  15 GipegrvvlitGepGtGKtifal 37 
                 Gi   r +l++G pGtGKt++a 
  CDO68823.1 238 GIKPPRGILMYGPPGTGKTLMAR 260
                 78888999*************96 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.044
      ATPase 111 laeaikeika...krvviDsitgl...ayeekeavaReilrqlvrvlkklgv 156
                 l++a +e +    + + iD i+++    ++++ +v R+ + ql++ + +l+ 
  CDO68823.1 290 LRKAFEEAEKnspSIIFIDEIDSIapkREKTNGEVERRVVSQLLTLMDGLKA 341
                 444444444333356666666666431556666789***********88765 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0017
      ATPase  10 eilkgGipegrvvlitGepGtGKtifalq 38 
                 +++k G+   + vl +G pGtGKt++a+ 
  CDO68823.1 506 KFIKYGMSPSKGVLFYGPPGTGKTLLAKA 534
                 455689999999**************975 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.78   2.8e+02      12      44 ..     429     466 ..     419     475 .. 0.71
   2 !   22.6   0.1   2.1e-07   7.6e-05      15      58 ..     727     770 ..     717     772 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.78
      Vps4_C  12 iemtwmdip.....sdkllePpvtlkDflkalkkarpt 44 
                 ++m + d++     ++ l    vt++ f  al ++ p+
  CDO68823.1 429 EKMDLIDLDedtidAEVLDSLGVTMDNFRFALGTSNPS 466
                 5677777666666244455559**********999998 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.1e-07
      Vps4_C  15 twmdipsdkllePpvtlkDflkalkkarptVskeDLekheeFTk 58 
                 ++++ ++++   P +t+ +f++a++ ar++Vs++D++++e F +
  CDO68823.1 727 KMEEDEEEEDPVPVITRLHFEEAMRFARRSVSDADIRRYEMFAQ 770
                 45555566777899****************************87 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0016      0.58     117     140 ..     245     268 ..     239     274 .. 0.87
   2 !   14.6   0.0   3.6e-05     0.013     117     137 ..     518     538 ..     508     542 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0016
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 +++yGp+ tGkt +a+a a+ +  
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGA 268
                 899***************997665 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.6e-05
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 v+fyGp+ tGkt la+aIa+ 
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANE 538
                 89*****************86 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00023     0.081       5      76 ..     245     312 ..     242     321 .. 0.68
   2 !   10.5   0.0    0.0011      0.38       5      23 ..     518     538 ..     515     589 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00023
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtide 76 
                 il+yGp+g+GKT +a+    + + +f+ + +G   +    ++   s  +++++++e +++ +  ++++iD id 
  CDO68823.1 245 ILMYGPPGTGKTLMARAVanE-TGAFFFLINGPEIMSKMAGE---SESNLRKAFEEAEKNSP--SIIFIDEIDS 312
                 89**************99853.33333333344444444443...66777777777766666..7788888776 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0011
      AAA_24   5 iliyGpsgiGKTtlakel..g 23 
                 +l yGp+g+GKT lak +  +
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIanE 538
                 789************998542 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0029         1      34      57 ..     243     266 ..     232     321 .. 0.85
   2 !   14.2   0.0   6.3e-05     0.023      26      62 ..     508     543 ..     501     549 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0029
       AAA_7  34 kpvllvGptGtGKtviikdllkkl 57 
                 + +l++Gp GtGKt++++ + ++ 
  CDO68823.1 243 RGILMYGPPGTGKTLMARAVANET 266
                 679*************99987765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.3e-05
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldkeky 62 
                 ++  ++ +k vl++Gp GtGKt+++k + ++ +  ++
  CDO68823.1 508 IKYGMSPSKGVLFYGPPGTGKTLLAKAIANETQ-ANF 543
                 6666788999*****************999887.555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.032        12      36      53 ..     245     262 ..     241     267 .. 0.85
   2 !    7.5   0.0    0.0076       2.7     130     180 ..     290     340 ..     271     350 .. 0.80
   3 !    9.3   0.0    0.0021      0.75      21      54 ..     503     536 ..     490     573 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.032
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +l +G+pgtGKt +a  +
  CDO68823.1 245 ILMYGPPGTGKTLMARAV 262
                 5789*********98655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0076
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensnsdv.galvealeriarrtg 180
                 +++  +++e+ + +  + iD ++++ +  e+ n +v +++v++l  + + ++
  CDO68823.1 290 LRKAFEEAEK-NSPSIIFIDEIDSIAPKREKTNGEVeRRVVSQLLTLMDGLK 340
                 4455566677.66**********************99*****9988876555 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0021
      AAA_25  21 prrwlvk.gllpagelallaGapgtGKttlaldla 54 
                 ++++ +k g+ p  + +l++G+pgtGKt la  +a
  CDO68823.1 503 HPEKFIKyGMSP-SKGVLFYGPPGTGKTLLAKAIA 536
                 555566646655.666799***********97665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.016       5.6      52      81 ..     241     270 ..     203     360 .. 0.66
   2 !   16.4   0.0     1e-05    0.0038      16      81 ..     469     543 ..     452     557 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.016
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg 81 
                 p + +L++G  GtGK  + +a+ ne+ +  
  CDO68823.1 241 PPRGILMYGPPGTGKTLMARAVANETGAFF 270
                 56679*****************99986544 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1e-05
      DUF815  16 lepveevdevklddLvgidkqkealvent.......eqfle..glpannvLLwGarGtGKSslvkallneyaeeg 81 
                  e+v ev +vk++d+ g+dk k++l+e +       e+f++    p++ vL++G  GtGK  l ka+ ne++++ 
  CDO68823.1 469 RETVVEVPTVKWEDIGGLDKVKQELQETVqypvehpEKFIKygMSPSKGVLFYGPPGTGKTLLAKAIANETQANF 543
                 57899999*****************98772222222578774236899*********************998875 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012      0.44      23      64 ..     243     281 ..     230     358 .. 0.68
   2 !   11.2   0.0   0.00062      0.22      22      51 ..     515     541 ..     493     553 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0012
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TT CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipee 64 
                        +l+ G  GtGK+l+ara+ +++    + f  +n  +i ++
       CDO68823.1 243 RGILMYGPPGTGKTLMARAVANET---GAFFFLINGPEIMSK 281
                      569****************97654...456666666655444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00062
                      SS-EEEECSTTSSHHHHHHHHHHHSTTTTS CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheaskrkek 51 
                      +  vl  G  GtGK+lla+ai ++++   +
       CDO68823.1 515 SKGVLFYGPPGTGKTLLAKAIANETQ---A 541
                      4679*****************88765...3 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.038        14      13     102 ..     244     441 ..     236     450 .. 0.60
   2 !   14.0   0.0   0.00015     0.054       5      51 ..     509     553 ..     506     621 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.038
                 EEEEEESTTSSHHHHHHHHTTSS--....SEE.EE...........................EETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx....xxx.xx...........................xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp....teG.ei...........................lldgkdlke..qeleslrkeigvlpqepqlfpeltvr 77 
                  + + G+ G+GK+ +++++a+++       +G ei                            +d+ d+    +e++  + e +v++q  +l ++l++r
  CDO68823.1 244 GILMYGPPGTGKTLMARAVANETGAffflINGpEImskmagesesnlrkafeeaeknspsiiFIDEIDSIApkREKTNGEVERRVVSQLLTLMDGLKAR 342
                 567789999999999888888876545552221235555666666666666655555555553333333332224444444556777778888888777 PP

                 HH..........................................................................HHHTCHHHHHHHSTTGGTTCBGE CS
                 xx..........................................................................xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  78 en..........................................................................esdeeiekalsklglkelkdtvv 102
                 +n                                                                           s++ ++++++k++l++l+++++
  CDO68823.1 343 SNvvvmaatnrpnsidpalrrfgrfdrevdigipdptgrleilrihtknmkladdvdleqiaadthgyvgsdlaalCSEAAMQQIREKMDLIDLDEDTI 441
                 778888777777777777777776666666666666666666666666666666666666655555555555555555555666666666666666655 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00015
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke 51 
                 +  +++++ v + G+ G+GK+ L+k++a++++  +  i ++g +l +
  CDO68823.1 509 KYGMSPSKGVLFYGPPGTGKTLLAKAIANETQ--ANFISIKGPELLT 553
                 667899999********************987..4556666666555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0     0.003       1.1       2      36 ..     245     284 ..     244     327 .. 0.73
   2 !   12.7   0.0   0.00031      0.11       2      40 ..     518     561 ..     517     589 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.003
      AAA_28   2 ivitGgestGKTtlleaLaar.gyp..vv..pEaareile 36 
                 i + G+++tGKT +++a a++ g     +  pE++ ++  
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANEtGAFffLIngPEIMSKMAG 284
                 6789***************765433113345666555554 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00031
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareileekla 40 
                 + + G+++tGKT l++a+a++   ++  +  pE  ++ + e  a
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANEtqaNFISIkgPELLTMWFGESEA 561
                 6799***************6544544444477777666655554 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00028     0.099      37     190 ..     245     398 ..     239     428 .. 0.75
   2 !    9.5   0.0    0.0023      0.82      37      64 ..     518     545 ..     509     554 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00028
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHT.T-SEEEEE-GGGGTT-.HHHHHH........HHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklr.kvDvLliDDiqflagk.ektqee........lfhtfna 125
                 +++yg+ G Gkt + +a++ne+      +    +++ e +++++   +++  ++f e  + +  ++ iD+i  +a k ekt+ e        l+++++ 
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETG-----AFFFLINGPEIMSKMAGESESNLRKAFEEAEKnSPSIIFIDEIDSIAPKrEKTNGEverrvvsqLLTLMDG 338
                 799*********99999998765.....5568899*********************98883568999*******9773455543222222226777777 PP

                 HHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTH CS
    Bac_DnaA 126 lleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeev 190
                 l   ++ vv+++   P++++    r+  rf++ +  di  pd   rl+il+ +   +++++ ++v
  CDO68823.1 339 LKARSNVVVMAATNRPNSIDPALRRF-GRFDREV--DIGIPDPTGRLEILRIHT--KNMKLADDV 398
                 788888999*******9998766664.6888865..555577788999987544..444444444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0023
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenape 64 
                 +++yg+ G Gkt L kai+ne+++n+ +
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQANFIS 545
                 79*******************9998765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0014       0.5       1      66 [.     248     314 ..     248     331 .. 0.67
   2 !    8.2   0.0    0.0087       3.1       1      25 [.     521     545 ..     521     573 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0014
                 EE-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekyg..fthlsaGdllreeakrgglakardemrklpleekkelqkeaaekia 66 
                 +G+PG GK+ +++ ++ + g  f  ++  +++ ++a ++++ + r+++++++++    +    +++ia
  CDO68823.1 248 YGPPGTGKTLMARAVANETGafFFLINGPEIMSKMAGESES-NLRKAFEEAEKNSPSIIFIDEIDSIA 314
                 7***************9997535556666666677666654.66777776666655554444444554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0087
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G+PG GK+ +++ ++ + +  ++s
  CDO68823.1 521 YGPPGTGKTLLAKAIANETQANFIS 545
                 7***************999877776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.007       2.5      20      44 ..     243     267 ..     214     277 .. 0.77
   2 !   11.2   0.0   0.00079      0.28      19      51 ..     515     549 ..     486     554 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.007
                 EEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalg 44 
                 + il++G+ G+GKT ++r++a++ g
  CDO68823.1 243 RGILMYGPPGTGKTLMARAVANETG 267
                 349*****************99877 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00079
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 ++ +l++G+ G+GKT l++++a++ + +  ++k P
  CDO68823.1 515 SKGVLFYGPPGTGKTLLAKAIANETQANfiSIKGP 549
                 3459*******************998876666665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1     0.003       1.1      22      40 ..     245     263 ..     231     268 .. 0.86
   2 !   10.0   0.0    0.0012      0.44      22      42 ..     518     538 ..     505     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.003
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 + + Gp GtGKt++a a+a
  CDO68823.1 245 ILMYGPPGTGKTLMARAVA 263
                 5689***********9998 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0012
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v   Gp GtGKt+la a+a e
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANE 538
                 6789***********999865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0034       1.2       2      46 ..     245     287 ..     244     356 .. 0.67
   2 !    9.6   0.0    0.0022      0.79       2      31 ..     518     547 ..     517     555 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0034
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtev 46 
                 +l+ g PG++ktl+++a+a+  ++ f  i   p+++ s + G + 
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGAFFFLIN-GPEIM-SKMAGESE 287
                 7999****************9998776664.56665.44555554 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0022
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vl+ g PG++ktll+ka+a+  +++f  i+
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQANFISIK 547
                 788999*****************9998775 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00024     0.086      22      88 ..     240     300 ..     213     340 .. 0.71
   2 ?    5.4   0.0     0.046        16      22      49 ..     513     540 ..     483     547 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00024
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEE CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkk 88 
                 k  + +l+  + GtGKTl+a +++ +         f+fl+++ ++++++  e ++ l +a++e++k+
  CDO68823.1 240 KPPRGILMYGPPGTGKTLMARAVANETG------AFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300
                 566777888999******9987777665......59**************88887777777653332 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.046
                 .TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierll 49 
                    k +l+  + GtGKTl+a +++ + +
  CDO68823.1 513 SPSKGVLFYGPPGTGKTLLAKAIANETQ 540
                 5667889999*********988887765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0037       1.3      20      41 ..     245     266 ..     231     306 .. 0.79
   2 !    9.1   0.0    0.0028         1      14      41 ..     512     539 ..     500     578 .. 0.76
   3 ?   -2.2   0.3       7.9   2.8e+03     129     148 ..     707     726 ..     683     777 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0037
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                  l+ GPPGtgKT +  ++ ++ 
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANET 266
                 589*********8888777765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0028
      AAA_11  14 lseseitliqGPPGtgKTktivellsql 41 
                 +s s+ +l+ GPPGtgKT    ++ ++ 
  CDO68823.1 512 MSPSKGVLFYGPPGTGKTLLAKAIANET 539
                 555556899*********7776666665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 7.9
      AAA_11 129 iskeleklakelrafeeeee 148
                 i++ +++ +++ +++e+ + 
  CDO68823.1 707 IEADIRRAREKKEKEEAGDV 726
                 22222222222222211111 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0034       1.2       4      45 ..     245     279 ..     242     329 .. 0.64
   2 !    8.4   0.0    0.0031       1.1       4      25 ..     518     539 ..     515     563 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0034
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                 +l  G +GtGKt+++ ++++e         a +++ N+p+++
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANET-------GAFFFLINGPEIM 279
                 6789***********9999998.......5555555555544 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0031
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 vl  G +GtGKt+++ ++++e 
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANET 539
                 56689*************9997 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0056         2      22      80 ..     244     296 ..     232     349 .. 0.62
   2 !    7.6   0.0    0.0089       3.2      20      45 ..     515     540 ..     509     547 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0056
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklek 80 
                  ++ YGp g GKt + + ++++        +++i+  e+ ++ + e+  e++ +k +e+
  CDO68823.1 244 GILMYGPPGTGKTLMARAVANETG----AFFFLINGPEIMSKMAGES--ESNLRKAFEE 296
                 5789*********98888888873....4678888877777777776..2222222222 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0089
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienle 45 
                 ++ ++ YGp g GKt L k i+++ +
  CDO68823.1 515 SKGVLFYGPPGTGKTLLAKAIANETQ 540
                 556788*************9999874 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     8e-06    0.0029      28      82 ..      38      94 ..      28     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8e-06
                     SS.-EEEEEHHHHHHHT--TT-EEEEEETTE.EEEEEEEEESSB-TTEEEEESSHCC CS
  Molydop_binding 28 ep.evveinpedAaalGikdGdlVevesrrG.svevrakvtervrpGvvfmpfgwwe 82
                     ++ +v+ +np+++++l +  Gd++ v+ ++   +++ a  +++v +G + m+  + +
       CDO68823.1 38 DDnSVATMNPATMERLQLFRGDTIIVRGKKRhDTVLIALSSDDVEEGKIQMNKVARN 94
                     33469**********************987669******************987765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0093       3.4      22      40 ..     246     264 ..     232     268 .. 0.83
   2 !    8.1   0.0    0.0055         2      20      43 ..     517     540 ..     507     548 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0093
      AAA_30  22 vltGpAGtGKttalkalre 40 
                 ++ Gp+GtGKt + +a+++
  CDO68823.1 246 LMYGPPGTGKTLMARAVAN 264
                 678**********999865 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0055
      AAA_30  20 vavltGpAGtGKttalkalreawe 43 
                  ++  Gp+GtGKt + ka+++  +
  CDO68823.1 517 GVLFYGPPGTGKTLLAKAIANETQ 540
                 56788*************987655 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.3   4.7e+02      55      75 ..      21      39 ..       6      77 .. 0.74
   2 ?    3.9   0.0      0.11        39       2      71 ..     246     310 ..     245     315 .. 0.64
   3 !    9.4   0.0    0.0022       0.8       5      70 ..     522     582 ..     518     587 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.3
  Viral_helicase1 55 malvkstkgkililDEylllh 75
                        +  ++ ++li+DE+++ +
       CDO68823.1 21 LRPK--KSPNRLIVDEATSDD 39
                     3333..3479*******9876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      ++ G pG GK+ + r ++++     + +n p  e+ ++ + +++++  +   +f++a ++s    i+++DE+
       CDO68823.1 246 LMYGPPGTGKTLMARAVANETgaFFFLINGP--EIMSKMAGESESNLRK---AFEEAEKNS--PSIIFIDEI 310
                      56789***************77533333434..5555554444444444...445554444..569999997 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0022
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      G pG GK+ l + ++++   ++ +++   ellt+++ +++++    +d++  a+ +     ++++DE
       CDO68823.1 522 GPPGTGKTLLAKAIANETqANFISIKG-PELLTMWFGESEANVRDVFDKARAAAPC-----VMFFDE 582
                      78*****************99999999.9*******98888888888888887765.....799998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.037        13       3      23 ..     245     265 ..     243     268 .. 0.87
   2 !    9.0   0.0    0.0033       1.2       3      25 ..     518     540 ..     516     556 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.037
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 +++ G++G GKT +++ +a +
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANE 265
                 7899***********999875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0033
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 v+  G++G GKT L++ +a + +
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANETQ 540
                 6789**************98765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.016       5.9      15      40 ..     241     266 ..     232     273 .. 0.89
   2 !    8.0   0.0    0.0045       1.6      19      51 ..     518     548 ..     510     563 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.016
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                  P  il+ G pG GK+ +a+++++e+
  CDO68823.1 241 PPRGILMYGPPGTGKTLMARAVANET 266
                 58889*****************9986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0045
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 +l  G pG GK+ la+++++e+  q n++ +++
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANET--QANFISIKG 548
                 566799***************9..999999986 PP

>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-05    0.0075      66     164 ..      81     184 ..      61     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-05
        UFD1  66 aeegtvylPewmmenlgleegdlveie.svslpkgkfvklqpqsedfldisdp..kavLek.aLrnfatLtkgdvieikyndkvyelkvlevkpes.av 159
                  eeg++ + +   +nl+++ gd+v+++   +++ gk v + p + +   +s       L+   L  +  + kgd++ ++   +++e+kv+e++p++  +
  CDO68823.1  81 VEEGKIQMNKVARNNLRVKLGDMVNVHpCLDIKYGKRVHILPFDDSVEGLSGNifDVYLKPyFLEAYRPVRKGDTFLVRGGMRTVEFKVIETDPAEyCI 179
                 58*************************6779***********999998887431144565415779****************************99545 PP

        UFD1 160 siiet 164
                    +t
  CDO68823.1 180 VAQDT 184
                 44444 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.017       6.1      24      83 ..     245     315 ..     234     321 .. 0.64
   2 ?    7.3   0.0     0.014       4.9      23      48 ..     517     542 ..     506     590 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.017
                      EEEEEETT--HHHHHHCC--TTS-EE--SS....TTHHHH-H..........HHHHHHTTTSEEEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleifv....verlaklp..........ldlleqakggtLylkdiadlsk 83 
                      +++ G++G+gk+l+Ar+ +++ g    + +    + +                +  e+ ++ ++++ +i+++ +
       CDO68823.1 245 ILMYGPPGTGKTLMARAVANETGAFFFLINgpeiMSKM---AgesesnlrkaFEEAEKNSPSIIFIDEIDSIAP 315
                      7899***************9998754333210003333...133333343223333334778888888887665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.014
                      -EEEEEETT--HHHHHHCC--TTS-E CS
  Sigma54_activ_2  23 pvfltGekGsgkelvArlLhknsgpw 48 
                       v+  G++G+gk+l A++++++ + +
       CDO68823.1 517 GVLFYGPPGTGKTLLAKAIANETQAN 542
                      49999**************9987653 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.047        17      23      43 ..     245     265 ..     240     270 .. 0.88
   2 !    9.2   0.0    0.0018      0.63      23      44 ..     518     539 ..     502     546 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.047
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 + ++G +G GKt +a+ + n+
  CDO68823.1 245 ILMYGPPGTGKTLMARAVANE 265
                 5689************99987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0018
                 EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  23 valvGmgGvGKttlakqilnks 44 
                 v ++G +G GKt lak i n+ 
  CDO68823.1 518 VLFYGPPGTGKTLLAKAIANET 539
                 779****************994 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.036        13      11      30 ..     243     262 ..     235     271 .. 0.79
   2 ?   -1.1   0.0       5.9   2.1e+03      50      75 ..     419     444 ..     397     493 .. 0.78
   3 ?    7.8   0.0     0.011       3.9       9      35 ..     514     540 ..     506     554 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.036
      AAA_19  11 kvllvtaGpGtGKTrvlkhi 30 
                 + +l+ ++pGtGKT + +++
  CDO68823.1 243 RGILMYGPPGTGKTLMARAV 262
                 567899********987766 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 5.9
      AAA_19  50 ftgrAakelrerlaalgaeatTiHrl 75 
                   + A++++re+++ ++++ +Ti + 
  CDO68823.1 419 CSEAAMQQIREKMDLIDLDEDTIDAE 444
                 45679999***999999998888754 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.011
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallv 35 
                 ++k +l  ++pGtGKT + k+i ++ +
  CDO68823.1 514 PSKGVLFYGPPGTGKTLLAKAIANETQ 540
                 67788999********99888877655 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0066       2.4       5      27 ..     246     268 ..     243     275 .. 0.92
   2 ?    5.5   0.0     0.028        10       5      31 ..     519     545 ..     516     547 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0066
         IPT   5 lifGatttGKtaeaiklaketga 27 
                 l++G+ +tGKt +a ++a+etga
  CDO68823.1 246 LMYGPPGTGKTLMARAVANETGA 268
                 89*******************97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
         IPT   5 lifGatttGKtaeaiklaketgapviv 31 
                 l +G+ +tGKt  a ++a+et a  i+
  CDO68823.1 519 LFYGPPGTGKTLLAKAIANETQANFIS 545
                 78*******************999887 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.14        51     130     152 ..     243     265 ..     199     270 .. 0.81
   2 ?    8.0   0.0    0.0037       1.3     116     155 ..     502     541 ..     426     550 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.14
       T2SSE 130 glilvsGgTgsGKttllyallke 152
                   il+ G+ g+GKt ++ a+ +e
  CDO68823.1 243 RGILMYGPPGTGKTLMARAVANE 265
                 56999**********99988765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0037
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 e+ ++++++ ++  + +l+ G+ g+GKt l+ a+ +e ++
  CDO68823.1 502 EHPEKFIKYGMSPSKGVLFYGPPGTGKTLLAKAIANETQA 541
                 6778999999999999****************99988765 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.079        28       4      26 ..     248     270 ..     245     275 .. 0.87
   2 ?    6.1   0.0     0.023       8.3       5      28 ..     522     545 ..     518     547 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.079
                     E-STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin   4 DGPagsGKssvaralaeklglky 26 
                      GP g+GK  +ara+a++ g+ +
      CDO68823.1 248 YGPPGTGKTLMARAVANETGAFF 270
                     6****************998765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.023
                     -STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglkyld 28 
                     GP g+GK  +a+a+a++ ++++++
      CDO68823.1 522 GPPGTGKTLLAKAIANETQANFIS 545
                     9******************99985 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.005       1.8       4      64 ..     246     311 ..     245     363 .. 0.83
   2 ?    1.9   0.0      0.43   1.5e+02       4      17 ..     519     532 ..     517     572 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.005
         Zot   4 lvtGapGsgKtsg..avkkdllp..alkegRkiitnidGlrlerieqvlgekvs.tarlirid.npe 64 
                 l +G+pG+gKt+   av ++     +l +g +i+ ++ G    ++++ ++e+ + ++ +i+id + +
  CDO68823.1 246 LMYGPPGTGKTLMarAVANETGAffFLINGPEIMSKMAGESESNLRKAFEEAEKnSPSIIFIDeI-D 311
                 689********861156665555767779******************99999888999**99941.2 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.43
         Zot   4 lvtGapGsgKtsga 17 
                 l++G+pG+gKt+ a
  CDO68823.1 519 LFYGPPGTGKTLLA 532
                 89*********865 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.5   1.8e+02       3      21 ..     246     264 ..     244     268 .. 0.83
   2 ?    0.9   0.0         1   3.7e+02      85     119 ..     290     325 ..     280     350 .. 0.70
   3 ?    5.5   0.0     0.041        15       6      32 ..     522     548 ..     518     552 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.5
                 EEE--TTSSHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvle 21 
                 ++ GppG+GKt + + v++
  CDO68823.1 246 LMYGPPGTGKTLMARAVAN 264
                 667********99998887 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1
                 HHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHHH CS
    NTPase_1  85 alealrkal.seadviviDEiGkmElkskkfkeave 119
                   +a+++a  +++ +i iDEi ++  k +k + +ve
  CDO68823.1 290 LRKAFEEAEkNSPSIIFIDEIDSIAPKREKTNGEVE 325
                 44455555535555*******777666666655555 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.041
                 --TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   6 GppGvGKtTlvkkvlellkssgvkvgG 32 
                 GppG+GKt l k ++++ + + ++++G
  CDO68823.1 522 GPPGTGKTLLAKAIANETQANFISIKG 548
                 9***************99888777777 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.2   2.6e+03     321     344 ..      84     107 ..      40     115 .. 0.73
   2 ?    2.6   0.0      0.18        64      18      44 ..     238     264 ..     231     267 .. 0.81
   3 ?    4.4   0.0     0.049        18      24      47 ..     517     540 ..     507     546 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.2
                 HHHCCTTSS-SCEEE-TT-EEEE- CS
        PIF1 321 nslkanglpnhvLkLkvGvpvmll 344
                  ++++n ++++ L+ k+G  v + 
  CDO68823.1  84 GKIQMNKVARNNLRVKLGDMVNVH 107
                 378999999999999999887655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.18
                 ..HCTS-EEEEESTTSSCHHHHHHHHH CS
        PIF1  18 lnekgklfFvtGsgGtgKtflwkallk 44 
                   + ++ + ++G  GtgKt + +a+ +
  CDO68823.1 238 GIKPPRGILMYGPPGTGKTLMARAVAN 264
                 556788899***********9998765 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.049
                 -EEEEESTTSSCHHHHHHHHHHCH CS
        PIF1  24 lfFvtGsgGtgKtflwkallkklr 47 
                  + ++G  GtgKt l ka+ +  +
  CDO68823.1 517 GVLFYGPPGTGKTLLAKAIANETQ 540
                 45678*************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 5068.67
//
Query:       CDO68824.1  [L=256]
Description: hypothetical protein BN946_scf184805.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-28   98.4   1.2    2.8e-28   97.7   1.2    1.4  1  CAP_GLY      CAP-Gly domain
    7.3e-20   71.2   0.0    8.1e-13   48.6   0.0    2.5  2  Ubiquitin_2  Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   1.2   3.1e-32   2.8e-28       2      65 .]     171     239 ..     170     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.1e-32
     CAP_GLY   2 gdrv..k...lkegrrGvvryvGpvpfakgewvGveldepnGkndGsvkgkrYFeckpnrGvFvrpekv 65 
                 g r+  +   ++ ++rG+vryvGp++fakg+wvG+e+dep GkndGsvkgkrYFec+pn GvFv+pe+v
  CDO68824.1 171 GARCevEsaeKDFRKRGTVRYVGPTEFAKGIWVGIEYDEPIGKNDGSVKGKRYFECQPNFGVFVKPERV 239
                 6665332333455679***************************************************97 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.9e-08    0.0007       1      34 [.       5      35 ..       5      43 .. 0.91
   2 !   48.6   0.0     9e-17   8.1e-13      31      86 ..      54     110 ..      51     111 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.9e-08
                 EEEEEEEETTSS.SEEEEEEETTSBHHHHHHHHH CS
  Ubiquitin_2  1 vvkleitssltkavsserrfsksltieelKekLe 34
                 +v+++++s++t    serrf+++lt+++lK ++ 
   CDO68824.1  5 TVNVFVVSPDT---RSERRFDLGLTVGQLKVRIA 35
                 69*********...8***************9986 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 9e-17
                  HHHHHHH---TTCEEEEEE..-SSSSEEECSSGCCSBCCCCT--TTEEEEEEE-TT- CS
  Ubiquitin_2  31 ekLelitGtspasmrLqlyd.dkkdnevsklddddalLgsYgvkdgmrihViDkdpn 86 
                  +kLelitG++++++++++ + ++  + +++l ddd++Lg+Yg++d+  ++V D++p+
   CDO68824.1  54 NKLELITGIPVQNQEISVLPsEDATQALCVLADDDKKLGFYGIHDWQVLKVNDLNPA 110
                  7*****************7515566778999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.57
# Mc/sec: 1346.44
//
Query:       CDO68825.1  [L=296]
Description: hypothetical protein BN946_scf184805.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-14   51.9   0.0    1.5e-13   51.3   0.0    1.3  1  4HBT_2       Thioesterase-like superfamily
    8.4e-06   26.1   0.1    2.2e-05   24.7   0.0    1.7  2  4HBT         Thioesterase superfamily
    0.00066   19.0   0.1      0.026   13.8   0.0    2.2  2  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.5e-17   1.5e-13       2     109 ..     138     271 ..     137     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.5e-17
      4HBT_2   2 rpndvDlnghlnnarylryleearvkflertgl.......ksrsiarrgiglilssahvryrrplkfpdrltve..................frvidid 75 
                  ++d D++ h+nn+rylr+le++r++++   g         +  i+ +g++lil+s+ ++y+rp+ +pd l +                   ++ ++  
  CDO68825.1 138 VWGDHDAFQHVNNVRYLRFLESGRIHWMRSLGAelggpakAEAMIKGKGVSLILKSISLDYKRPVVYPDTLLIAhkphhgplhsssqvdspeVNTRRQA 236
                 69**************************95554334444445566666**********************96665556666655544444445555599 PP

      4HBT_2  76 aktliiehrflsnadgkkaarveerivvmdygk.r 109
                 ++++++++++ s a+ +++ + + ++v++dy+k +
  CDO68825.1 237 RTHFHVKAAVWSYAQRRIVTESDSVLVWYDYDKlT 271
                 999999999999877777*************9833 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.6e-09   2.2e-05       2      52 ..     146     210 ..     145     216 .. 0.95
   2 ?   -3.6   0.1       2.5   1.5e+04      58      73 ..     234     249 ..     230     254 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.6e-09
                 SSB-HHHHHHHHHHHHHHHHHHTTST..............TEEEEEEEEEEEESS-BBTTCEEEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr..............gilvvvvelsidflrpvrlgdeltv 52 
                  +v++ +yl++l++++  ++rslg +              g  +   ++s+d++rpv ++d+l++
  CDO68825.1 146 QHVNNVRYLRFLESGRIHWMRSLGAElggpakaeamikgkGVSLILKSISLDYKRPVVYPDTLLI 210
                 79*************************************999999*****************987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
                 EEESSEEEEEEEEEET CS
        4HBT  58 rlgrtsavvevevrde 73 
                 r+ rt + v+  v++ 
  CDO68825.1 234 RQARTHFHVKAAVWSY 249
                 6677888888888765 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.4e-06     0.026     163     181 ..     139     157 ..     120     165 .. 0.87
   2 !    3.2   0.0    0.0077        46     194     217 ..     190     213 ..     187     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.4e-06
  Acyl-ACP_TE 163 ysDlDlnqHvNNvkYlewi 181
                  + D D +qHvNNv+Yl ++
   CDO68825.1 139 WGDHDAFQHVNNVRYLRFL 157
                  7899***********9875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0077
  Acyl-ACP_TE 194 elkkitlkYekevqlgdkveilte 217
                  +lk+i l+Y+++v + d++ i  +
   CDO68825.1 190 ILKSISLDYKRPVVYPDTLLIAHK 213
                  689**************9986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 1588.06
//
Query:       CDO68826.1  [L=289]
Description: hypothetical protein BN946_scf184805.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-09   35.0   7.7    9.1e-09   35.0   7.7    2.4  2  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
    2.1e-08   33.9   8.4    2.1e-08   33.9   8.4    2.5  2  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
    5.5e-08   32.8   9.0    5.5e-08   32.8   9.0    2.4  2  zf-C3HC4_4      zinc finger of C3HC4-type, RING
    1.5e-07   31.3   4.2    1.5e-07   31.3   4.2    3.5  3  zf-RING_UBOX    RING-type zinc-finger
    4.9e-07   30.0   9.6    4.9e-07   30.0   9.6    2.5  2  zf-RING_2       Ring finger domain
    9.3e-07   28.6   9.6    9.3e-07   28.6   9.6    2.9  2  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
    2.8e-05   24.0   9.2    2.8e-05   24.0   9.2    2.4  2  zf-RING_5       zinc-RING finger domain
    0.00039   20.2   7.1    0.00039   20.2   7.1    2.5  2  Prok-RING_4     Prokaryotic RING finger family 4
     0.0062   16.3   3.5     0.0062   16.3   3.5    2.6  2  zf-RING_4       RING/Ubox like zinc-binding domain
     0.0077   16.4   0.5      0.013   15.7   0.5    1.3  1  Phage_DsbA      Transcriptional regulator DsbA
  ------ inclusion threshold ------
       0.79    9.5  12.3      0.072   12.9   5.2    2.6  2  zf-RING_11      RING-like zinc finger
          1    9.3  14.2       0.08   12.8   6.2    2.8  3  zf-RING_6       zf-RING of BARD1-type protein
        2.2    8.5   7.1        1.9    8.7   2.8    2.8  3  FYVE            FYVE zinc finger
        8.3    6.6  11.9       0.96    9.6   5.9    2.3  2  zf-RING_10      zinc RING finger of MSL2


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   7.7   7.1e-12   9.1e-09       4      47 ..       3      51 ..       1      53 [. 0.95
   2 ?    0.1   0.6       0.6   7.7e+02       4      13 ..     232     241 ..     228     245 .. 0.56

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 7.1e-12
                B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH......TT-B-TTT--B- CS
  zf-C3HC4_3  4 eCviClerprnvvllpCgHlvlCeeCaekllk......rkkkCpiCrrpi 47
                +Cv+Cl++ ++ + lpCgH+ +C++C+ +l +        + Cp C+ p+
  CDO68826.1  3 TCVVCLDTLKEPAALPCGHV-FCHSCVIRLIRsvspftTIHFCPTCKHPY 51
                7*******************.**********99***9999*******997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.6
                 B-TTTSSSBS CS
  zf-C3HC4_3   4 eCviClerpr 13 
                 eC+ Cler+r
  CDO68826.1 232 ECPDCLERKR 241
                 4555555544 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   8.4   1.6e-11   2.1e-08       1      41 []       4      47 ..       4      47 .. 0.96
   2 ?    0.2   0.5      0.56   7.2e+02      21      26 ..     229     234 ..     227     245 .. 0.66

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.6e-11
                -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC....TSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCirkilks....rkkvkCPlC 41
                C +Cl+++kep  +l+C+H fC++C+ ++++s     +   CP+C
  CDO68826.1  4 CVVCLDTLKEPA-ALPCGHVFCHSCVIRLIRSvspfTTIHFCPTC 47
                9***********.*******************999888888**** PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.56
                 B-CHHH CS
    zf-C3HC4  21 fCskCi 26 
                 fCs+C 
  CDO68826.1 229 FCSECP 234
                 666663 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   9.0   4.3e-11   5.5e-08       1      42 []       4      47 ..       4      47 .. 0.91
   2 ?    0.4   0.2      0.57   7.4e+02      20      26 ..     229     235 ..     225     249 .. 0.57

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.3e-11
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeq..llCplC 42
                C +Cld L++P+ l+CGh+fC sC+ +l  + +     ++Cp C
  CDO68826.1  4 CVVCLDTLKEPAALPCGHVFCHSCVIRLIRSVSPFTtiHFCPTC 47
                99**************************98877655569****9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.57
  zf-C3HC4_4  20 fClsCis 26 
                 fC +C +
  CDO68826.1 229 FCSECPD 235
                 5555433 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   4.2   1.2e-10   1.5e-07       1      25 [.       4      28 ..       4      40 .. 0.83
   2 ?    3.4   0.4      0.06        77       1      13 [.      44      61 ..      44      66 .. 0.84
   3 ?   -0.7   1.5       1.2   1.5e+03      20      24 ..     229     233 ..     228     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.2e-10
  zf-RING_UBOX  1 CpIClelftdPlv.lpCGHtFCreCl 25
                  C +Cl+++++P   lpCGH+FC++C+
    CDO68826.1  4 CVVCLDTLKEP-AaLPCGHVFCHSCV 28
                  99*********.446**********9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.06
  zf-RING_UBOX  1 CpIClelft....dP.lv 13
                  Cp C+ ++t    dP lv
    CDO68826.1 44 CPTCKHPYTianvDPnLV 61
                  *********998888555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.2
  zf-RING_UBOX  20 FCreC 24 
                   FC+eC
    CDO68826.1 229 FCSEC 233
                   88887 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   9.6   3.8e-10   4.9e-07       2      44 .]       3      48 ..       2      48 .. 0.86
   2 ?   -0.0   0.4       0.9   1.1e+03      26      43 ..     230     236 ..     225     243 .. 0.59

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.8e-10
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssst......CPlCr 44
                +C++Cl+ l+++    +lpCgHvf+++C+ r++rs s       CP+C+
  CDO68826.1  3 TCVVCLDTLKEPA---ALPCGHVFCHSCVIRLIRSVSPfttihfCPTCK 48
                7*****9997644...456************9988888999*******7 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.9
   zf-RING_2  26 hreClerwlrssstCPlC 43 
                 + eC           P C
  CDO68826.1 230 CSEC-----------PDC 236
                 4444...........333 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   9.6   7.2e-10   9.3e-07       2      34 ..       4      35 ..       3      47 .. 0.76
   2 ?    0.5   0.6      0.44   5.6e+02      22      28 ..     229     235 ..     226     242 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 7.2e-10
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeek 34
                C +Cld lk+p    pCgHvfC +C+ r +++ 
  CDO68826.1  4 CVVCLDTLKEP-AALPCGHVFCHSCVIRLIRSV 35
                ***********.999************977653 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.44
  zf-C3HC4_2  22 fCqkCil 28 
                 fC++C +
  CDO68826.1 229 FCSECPD 235
                 7777744 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   9.2   2.2e-08   2.8e-05       2      43 ..       4      48 ..       3      49 .. 0.96
   2 ?   -0.1   0.6      0.73   9.4e+02       2       5 ..     233     236 ..     228     248 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.2e-08
   zf-RING_5  2 CnkCfeklskeekfyltsCgHifCekClkkll......ekeavCpiCr 43
                C +C + l   +++  ++CgH+fC++C+ +l       +  + Cp+C+
  CDO68826.1  4 CVVCLDTL---KEPAALPCGHVFCHSCVIRLIrsvspfTTIHFCPTCK 48
                9*******...9999********************************9 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.73
   zf-RING_5   2 CnkC 5  
                 C+ C
  CDO68826.1 233 CPDC 236
                 3333 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   7.1     3e-07   0.00039       1      38 [.       4      49 ..       4      55 .. 0.84
   2 ?   -0.6   0.6      0.97   1.2e+03      31      38 ..     231     238 ..     225     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3e-07
  Prok-RING_4  1 CvlCgeqekkailepCgHlvCkeCfdskdls........sCPlCqr 38
                 Cv+C    k+++  pCgH++C++C      s         CP C++
   CDO68826.1  4 CVVCLDTLKEPAALPCGHVFCHSCVIRLIRSvspfttihFCPTCKH 49
                 ************************9887444446667778888876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.97
  Prok-RING_4  31 ssCPlCqr 38 
                  s CP C +
   CDO68826.1 231 SECPDCLE 238
                  46666654 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.5   4.9e-06    0.0062      19      47 ..      18      51 ..       1      52 [. 0.77
   2 ?   -0.3   0.4      0.77   9.9e+02      39      43 ..     232     236 ..     224     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.9e-06
   zf-RING_4 19 eCgyqiClfCyhrile.....eeegrCPaCreeY 47
                +Cg+ +C+ C  r+++     ++   CP C+++Y
  CDO68826.1 18 PCGHVFCHSCVIRLIRsvspfTTIHFCPTCKHPY 51
                79*************9777776799********* PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.77
   zf-RING_4  39 rCPaC 43 
                  CP C
  CDO68826.1 232 ECPDC 236
                 68888 PP

>> Phage_DsbA  Transcriptional regulator DsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   9.8e-06     0.013      41      66 ..     136     161 ..     125     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.8e-06
  Phage_DsbA  41 klYhkdnRdveeaktekvveLYeklF 66 
                 +l  k  Rd++eak++++ +LY++ F
  CDO68826.1 136 ALKMKRERDEFEAKYNELKKLYDEKF 161
                 667799*****************988 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.2   5.6e-05     0.072       2      29 .]       4      28 ..       3      28 .. 0.91
   2 ?   -0.2   0.6      0.67   8.6e+02      14      22 ..      40      49 ..      33      51 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-05
  zf-RING_11  2 CsICLeefkpgqalfilpCsHtFHfkCI 29
                C++CL+++k+  al   pC+H+F   C+
  CDO68826.1  4 CVVCLDTLKEPAAL---PCGHVFCHSCV 28
                ********998877...******98886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.67
  zf-RING_11 14 al.filpCsH 22
                ++ f++ C+H
  CDO68826.1 40 TIhFCPTCKH 49
                5636677*** PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.2   6.2e-05      0.08      10      55 ..       4      56 ..       1      61 [. 0.71
   2 ?   -3.3   0.1       6.6   8.4e+03      13      26 ..      94     107 ..      88     111 .. 0.53
   3 ?    0.6   0.1      0.42   5.4e+02      38      46 ..     228     236 ..     218     240 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.2e-05
   zf-RING_6 10 csrctdilrepvclggcehifcsncisdcfgsg........cpvcytpawiqdv 55
                c  c d l+ep  l  c h+fc  c+   + s         cp c  p  i +v
  CDO68826.1  4 CVVCLDTLKEPAAL-PCGHVFCHSCVIRLIRSVspfttihfCPTCKHPYTIANV 56
                999**********9.5*********97766554112222336666666666555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.6
   zf-RING_6  13 ctdilrepvclggc 26 
                 c  +l e   l  c
  CDO68826.1  94 CERLLAENASLRSC 107
                 44455555555444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.42
   zf-RING_6  38 cfgsgcpvc 46 
                  f s cp c
  CDO68826.1 228 SFCSECPDC 236
                 456666655 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.8    0.0015       1.9      31      64 ..      19      49 ..      17      53 .. 0.83
   2 ?    2.1   0.1      0.17   2.2e+02       7      22 ..      39      54 ..      33      68 .. 0.77
   3 ?   -0.6   0.1       1.2   1.5e+03      35      42 ..     229     236 ..     223     254 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0015
                T--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHH CS
        FYVE 31 CGkvvCekCssklvallekeaeeksvrvCkeCla 64
                CG+v+C++C   l++++   +  + ++ C +C++
  CDO68826.1 19 CGHVFCHSCVIRLIRSV---SPFTTIHFCPTCKH 49
                **********9999655...67788888988876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                .--SB-TTT--B--SS CS
        FYVE  7 sevkkCeiCakkFsll 22
                ++++ C+ C++++++ 
  CDO68826.1 39 TTIHFCPTCKHPYTIA 54
                6778899999999874 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
                 E-STTS-E CS
        FYVE  35 vCekCssk 42 
                 +C++C + 
  CDO68826.1 229 FCSECPDC 236
                 45555433 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.9   0.00075      0.96       2      34 ..       3      32 ..       3      57 .. 0.74
   2 ?   -1.0   0.3       1.5   1.9e+03      37      51 ..     230     245 ..     223     250 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00075
  zf-RING_10  2 sCvvCckLLvdPlepkekeCqHyvCrlCvgkkk 34
                +CvvC   L++P +     C+H  C++Cv +  
  CDO68826.1  3 TCVVCLDTLKEPAA---LPCGHVFCHSCVIRLI 32
                5*********9976...58*********86543 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
  zf-RING_10  37 kpsCsqCk.dyekyee 51 
                  ++C+ C    +kye 
  CDO68826.1 230 CSECPDCLeRKRKYEA 245
                 4566666434445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1962.41
//
Query:       CDO68827.1  [L=390]
Description: hypothetical protein BN946_scf184805.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        4.3    7.4  16.7       0.55   10.3   0.4    4.0  4  Ribosomal_L19e  Ribosomal protein L19e


Domain annotation for each model (and alignments):
>> Ribosomal_L19e  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.16   2.9e+03     102     125 ..      14      37 ..       5      40 .. 0.80
   2 ?   10.3   0.4   3.1e-05      0.55      47      88 ..      82     125 ..      51     129 .. 0.84
   3 ?   -2.1   0.7       0.2   3.7e+03      53      58 ..     237     242 ..     194     263 .. 0.58
   4 ?    7.1   0.7    0.0003       5.4       3      22 ..     267     286 ..     265     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.16
                     HHHHHHHHTTSS-HHHHHHHHHHH CS
  Ribosomal_L19e 102 rlLkelrekkkidkktYrelYrka 125
                     ++Lk++ +++k+ + tY ++ rk+
      CDO68827.1  14 EVLKNIVQEGKVHEFTYGKYRRKV 37 
                     579999999999999999999887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 3.1e-05
                     SEEE-------THHHH..HHHHHHHTT-S-SGGG--S-HHHHS- CS
  Ribosomal_L19e  47 lIikkpkkgnsrarar..erkekkrkgrrrgsGkrkGtkeaRlp 88 
                      + +k+++++sr+r++  + +ek +kgr   + + kG+k aR  
      CDO68827.1  82 PVEQKKSSTTSRKRTNppQSSEKAAKGRSVAKDSAKGKKAARSA 125
                     4778999999999998435667778*****************76 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.2
                     -----T CS
  Ribosomal_L19e  53 kkgnsr 58 
                     +k +s+
      CDO68827.1 237 QKKESE 242
                     222222 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0003
                     HHHHHHHHHHTTS-GGGEEE CS
  Ribosomal_L19e   3 klqkrlaasvlkvGknrvwl 22 
                     ++ krl + vl +G+++vw 
      CDO68827.1 267 ETIKRLKSLVLACGVRKVWS 286
                     578****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2299  (0.128228); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.37s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 2404.28
//
Query:       CDO68828.1  [L=575]
Description: hypothetical protein BN946_scf184805.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.59   10.9   0.1       0.59   10.9   0.1    3.7  4  Filaggrin  Filaggrin


Domain annotation for each model (and alignments):
>> Filaggrin  Filaggrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.6      0.18   3.3e+03      39      48 ..      86      95 ..      63     102 .. 0.77
   2 ?   -1.0   0.2      0.17   3.1e+03      22      34 ..     242     257 ..     235     266 .. 0.64
   3 ?   10.9   0.1   3.3e-05      0.59      38      52 ..     372     386 ..     360     387 .. 0.89
   4 ?   -3.2   1.8       0.8   1.4e+04      23      41 ..     462     480 ..     449     482 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.18
   Filaggrin 39 srrhRgSSvS 48
                ++ hR+SS+S
  CDO68828.1 86 RSPHRRSSIS 95
                6779999999 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.17
   Filaggrin  22 sSrhsgagqgqa...s 34 
                  S h+ +++++a    
  CDO68828.1 242 PSAHAKTSRAEAnmaV 257
                 4778888888874431 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 3.3e-05
   Filaggrin  38 rsrrhRgSSvSQaSD 52 
                    rhRgS  SQ+SD
  CDO68828.1 372 NGDRHRGSVSSQDSD 386
                 568***********9 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 0.8
   Filaggrin  23 Srhsgagqgqassesrsrr 41 
                 S  +  +q+qa +  r+r+
  CDO68828.1 462 SHPAAEAQAQAKQTARQRK 480
                 4444455666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3905.80
//
Query:       CDO68829.1  [L=141]
Description: hypothetical protein BN946_scf184805.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-11   43.9   0.0    2.9e-11   43.7   0.0    1.1  1  Ran_BP1          RanBP1 domain
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.31   11.2   0.0    1.3  1  Tape_meas_lam_C  Lambda phage tail tape-measure protein (Tape


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.3e-15   2.9e-11       2     110 ..      12     121 ..      11     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.3e-15
                 ---SSTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-T..TS-EEESTTESSEEEEEEEE-TTSSSEEEE CS
     Ran_BP1   2 vksgEEdEevlfkqraKLfrfdaekkewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitk..emklkplagsdrslvwtaadaadeeakleq 98 
                 v +gEEdE+v+ + +      ++ ++++ e  +G++K+l++k++ + R+l Rr+ v+kv +N ++ +  +++l+  +g  r +++  ++   e+++++ 
  CDO68829.1  12 VVTGEEDERVIAEAKGVKVYIKRGERDFCEGILGNVKLLRHKETRQERILFRREPVMKVSMNVRLGPlvRYTLDEAQGLLRLIIMEPVE-GSEQGQVVV 109
                 789********9988655557888999**************************************983346667888888777775444.567899999 PP

                 EEEEESSHHHHH CS
     Ran_BP1  99 laikfkkkeead 110
                 +a+k +k+ ++d
  CDO68829.1 110 YALKRGKASKTD 121
                 999999888776 PP

>> Tape_meas_lam_C  Lambda phage tail tape-measure protein (Tape_meas_lam_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.4e-05      0.31      46      62 ..     117     133 ..     108     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
  Tape_meas_lam_C  46 tGklsfsdlaesviadl 62 
                      + k++fsd+a+sv+++l
       CDO68829.1 117 ASKTDFSDFADSVLESL 133
                      6899**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 982.99
//
Query:       CDO68830.1  [L=362]
Description: hypothetical protein BN946_scf184805.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0015   18.5   0.0      0.022   14.7   0.0    2.3  2  Thioredoxin  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-06     0.022       2      31 ..      29      57 ..      28      68 .. 0.82
   2 ?    1.1   0.0     0.022     4e+02      34     100 ..     121     191 ..     119     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-06
                 EEESSHHHHHHHHTTTSSEEEEEEE-TTSH CS
  Thioredoxin  2 vlvltkenFeeevakekklvlveFyApwCg 31
                 v+ l ++++++ +++ + + +v F ApwCg
   CDO68830.1 29 VKMLDAKDWKKVMKE-NATSVVAFVAPWCG 57
                 567778888877766.9************9 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.022
                  HCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSS....EEEEEETTE.EEEEEESS-HHHHHHHH CS
  Thioredoxin  34 kalaPeleklaeelkdkvklakvdvdenedlakkyevegiP....tlklfkngk.evkkyegarekeklaaf 100
                  k++   +++l ++++d++k+a v  d   +   +++ e  P    +++++++g     +y+g +++e l++f
   CDO68830.1 121 KHIPLLWQTLGNKYRDQIKFA-VHRDRYGKSSIEMGLEKGPpkssKVLFYPAGStDYVRYHGVAKHEPLVKF 191
                  556667999999999999997.67777777777777766664444466777777666677777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2748.69
//
Query:       CDO68831.1  [L=138]
Description: hypothetical protein BN946_scf184805.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.15   12.1   0.0    1.3  1  DUF4485   Domain of unknown function (DUF4485)


Domain annotation for each model (and alignments):
>> DUF4485  Domain of unknown function (DUF4485)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.5e-06      0.15      33      59 ..      31      58 ..      12      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.5e-06
     DUF4485 33 kkLcepeke.nleekknRNdYlqlLlkm 59
                +kLce++ e n++++ +RN Y++  +  
  CDO68831.1 31 SKLCEITGEpNAQMRWSRNAYMRDVVSR 58
                69********************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 993.60
//
Query:       CDO68832.1  [L=784]
Description: Glycosyltransferase Family 66 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-145  485.8  36.4   6.5e-138  460.7  34.1    2.1  2  STT3      Oligosaccharyl transferase STT3 subunit


Domain annotation for each model (and alignments):
>> STT3  Oligosaccharyl transferase STT3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.7  34.1  3.6e-142  6.5e-138       2     441 ..      23     481 ..      22     543 .. 0.90
   2 !   25.7   0.2   2.8e-10     5e-06     431     485 ..     558     602 ..     510     604 .. 0.68

  Alignments for each domain:
  == domain 1  score: 460.7 bits;  conditional E-value: 3.6e-142
                 HHHHHHHHHCCCCCHCC.CCCCCCT--S--SSCHHHHHHHCCCHHHT-C.....CCHHSSEETTSSTTT-EEESTTCCHCCC.CHHHHHHCCHHC.... CS
        STT3   2 lilvifalialvavasrdlFtdedglsylsefDpYYnyRltenllnnGfpGdvvikkknwfdhsqyyPpGsrvdygplivlLamlasaiinhsld.... 96 
                 l ++ ++li ++a+asr lF++++++s+++efDp++nyR+t+ l+++Gf     +++ nwfd+ ++yP+G rv +g+++++L m++s++i+ +l+    
  CDO68832.1  23 LRIIALSLISGAAIASR-LFAVVNFESIIHEFDPWFNYRATKVLAEKGF-----YEFWNWFDPTAWYPLG-RVVGGTIYPGL-MATSGVIYNVLHalhl 113
                 567889***********.*******************************.....****************.***********.**************** PP

                 .HHHHHHHHCCHHHHHHHHCHHHHHHHHHHS-CCCHHHHHHHCCC-CCCCCTTSTT--STCCCCHHHHHHHHHHHHHHHHCCSTTCHHHHHHHHHHHHH CS
        STT3  97 .vsirevclwlpallgsLlaIpiyflvrelksdiaGllAAlllaiaPgYlsrtvaGfyDtdmfeivlllfvlffflkaiktksnkislaviaaliifli 194
                  v+ir++c++l++ ++ L+a+ +y +++e+k++ aGllAA++++iaPgY+sr+vaG+yD+++++i+ll+f+++ ++ka+kt+s   ++ +++al++f++
  CDO68832.1 114 pVDIRNICVLLAPGFSALTAWSTYMFTKEMKDESAGLLAAAFIGIAPGYISRSVAGSYDNEAIAIFLLMFTFYCWIKALKTGS--AFFGTLTALFYFYM 210
                 ***********************************************************************************..************** PP

                 HTTSCCGGHHHHCCHHHHHHHHHCTTTS-CCHHHHHHHHHHHHHHH..CCCCCCCTTCHHHSTTTCHHCCCCHHHHHHHHCCCHHC..CCCCCHHCCCH CS
        STT3 195 vlaWggyailiyallllfilalLiigrfelklkiavtfsviiaflviaiivllflgfqvvavseiigalgifgllqlvafgsvvvlvaelkfyqfislf 293
                 v+aWggy  +i+++++l+ l l+++grf+++l++a+  +++i++l+  +++++f+gfq+v++se+++alg+fgllq+vaf ++v+    ++++ f+s++
  CDO68832.1 211 VAAWGGY-AFITNMIPLHALTLILMGRFSSRLYVAYSSWYAIGTLA--SMQVPFVGFQPVRTSEHMAALGVFGLLQIVAFAELVRT--HVSSKHFQSIL 304
                 *******.9*************************************..**************************************..*********** PP

                 HTT.HHHHTT--GGGHHHHHHHHHHHHCCCCCCTS-----TTHHHHHHHHHS---S--CCHHHCCSSSTTTTCCCHHHCHHCCHHCTCHHHHHHHHHHH CS
        STT3 294 qpgilsevlgligevvtalavlglialwlgilyslldleyaklkikiiilvsvwlpvgllaltkglrfliftvPlgiifvgllleflavfvkiysvsqi 392
                 +++ ++ ++ l++ + + l++ g ia+w+g++ysl+d+ yak +i+ii++vs+++p+ + a++ +l+flif++P+g+++++ +l++++vfv+iy+v + 
  CDO68832.1 305 YGS-VVVIGVLGVLAFAGLTYKGWIAPWTGRFYSLWDTGYAKKYIPIIASVSEHQPTAWPAFFMDLQFLIFIFPAGVVLCFRELRDEHVFVIIYAVVAS 402
                 ***.99999999*************************************************************************************** PP

                 HHCCC-SCHCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHH....HHHHH..............................H CS
        STT3 393 lfsgvvvillmltllpvlallaavkiskifstykdekeakikv....aakav..............................a 441
                 +f+gv+v+ lmltl+pv+++ aav++s +++ty d +e  + +    +                                  +
  CDO68832.1 403 YFAGVMVR-LMLTLTPVVCVAAAVAFSSLLDTYLDPVEPTVFNdaapS---EvapaadspasipsigtgvtpsasskktkkaV 481
                 ********.***************************998888744442...14446666677666666666554444444440 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 2.8e-10
                 HHHHHHHHHHHHHHCT.TTTTHHH.TTHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        STT3 431 akikvaakavaptksnglkeslew.kantnrdsvvitwwdyghilaveadrpVtfd 485
                 ++i+           +   e+ +w ++nt++d+vv++wwdyg+ +a +adrp+++d
  CDO68832.1 558 QHII-----------DDFREAYYWlRQNTPKDAVVMSWWDYGYQIAGMADRPTLVD 602
                 3333...........56789**********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5115.07
//
Query:       CDO68833.1  [L=360]
Description: hypothetical protein BN946_scf184805.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-12   44.9   0.4    3.7e-11   43.1   0.0    2.1  2  UBX              UBX domain
  ------ inclusion threshold ------
      0.016   15.5   0.3      0.016   15.5   0.3    1.8  2  zf-C2H2_2        C2H2 type zinc-finger (2 copies)
      0.096   12.3  15.8       0.13   11.8  15.8    1.1  1  DUF572           Family of unknown function (DUF572)
       0.13   12.7   0.2       0.26   11.8   0.2    1.5  1  zf-C2H2          Zinc finger, C2H2 type
        0.2   12.2   0.5       0.45   11.0   0.5    1.6  1  zf-H2C2_2        Zinc-finger double domain
        2.1    8.4  21.4          3    7.9  21.4    1.2  1  Asp-B-Hydro_N    Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.85   2.5e+03      56      69 ..     151     165 ..     146     171 .. 0.85
   2 !   43.1   0.0   1.2e-14   3.7e-11       1      78 [.     278     358 ..     278     360 .] 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.85
                 EEGGCCC.CSBCCCC CS
         UBX  56 reltksd.kktLsdl 69 
                 r+lt+++ k++L +l
  CDO68833.1 151 RPLTEEEkKQKLAEL 165
                 799999999***998 PP

  == domain 2  score: 43.1 bits;  conditional E-value: 1.2e-14
                 XTTSSEEEEEEEETTS.TEEEEEEESSSBHHHHHHHHHHHCCCCC.TSEEEEETTTTEEGGCCC.CSBCCCCTTTSCEEEE CS
         UBX   1 seaedatrlqiRlpdG.srlvrrFkksdtlesvyeyVdsklfeke.epFqLltsfPrreltksd.kktLsdlgllpnstlv 78 
                 s+++++trlqiRl++G +    + +++++l++v e+ +s++   + +++++  +fPr+ ++++d +k+L +lgl+p+++l+
  CDO68833.1 278 SKDYPETRLQIRLASGgQPYITTLSSDAPLREVAEFLASQTLAVNvDTVKFSLTFPRKIFAPEDfSKSLRELGLTPSAVLI 358
                 6899**********97255788899*************998877646677777**************************98 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.3   5.3e-06     0.016      50      84 ..     115     149 ..     110     183 .. 0.88
   2 ?   -2.4   0.4         2     6e+03      60      85 ..     195     220 ..     191     226 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
   zf-C2H2_2  50 kleClyCekefkslealreHmkkkgHckineeeee 84 
                 + +C +C+k+fk+++  + H +k gH +++e++ee
  CDO68833.1 115 SIKCSVCGKTFKNVDLANYHAEKSGHDQFEESTEE 149
                 479*************************9775543 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
   zf-C2H2_2  60 fkslealreHmkkkgHckineeeeee 85 
                 +k+++++re +k+k+  k +e++++e
  CDO68833.1 195 NKDVNQIREELKQKELLKEAEKKRKE 220
                 67888888888888877655554444 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  15.8   4.4e-05      0.13      73     238 ..     116     268 ..     115     309 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
      DUF572  73 ikCtrClneitfkTDPkntdYvveeGatRnfkaekleeeeakreekekeeeeaedamkklEkrtkdskkemealesLeeLq.elnqrqakvdfdanlel 170
                 ikC+ C+++++   D   + Y  e+ +  +f++ +  ee      +   eee++ ++++l ++ + ++++++  e+ e+L  e+ +r+a+ d+++  e+
  CDO68833.1 116 IKCSVCGKTFKN-VDL--ANYHAEKSGHDQFEEST--EEI-----RPLTEEEKKQKLAELKEKLAAKRAAKAKEEAKESLAnEAIRRKANKDVNQIREE 204
                 889999877653.444..45888888888787776..222.....222333445666777777777777777777777777677889999999999999 PP

      DUF572 171 rkefreekkereeeeedeealkekisle.kikllpede.edekkakllegkteslfasseesaksakk.kp 238
                 +k+ +  k++ ++++e+ e+ k+++ ++ +i+  +++   +  ++k+l+       + ++++++ a+  kp
  CDO68833.1 205 LKQKELLKEAEKKRKEKLEDAKARAAVKaQIEADKRERaAKAAREKALR-------EGKAPPEQVATVaKP 268
                 9977755555555555556666555332233322222212222222222.......222222222222222 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   8.6e-05      0.26       2      20 ..     117     135 ..     116     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                 kC++Cgk+Fk+ ++ + H 
  CDO68833.1 117 KCSVCGKTFKNVDLANYHA 135
                 8*********988877775 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00015      0.45      14      26 .]     115     127 ..     112     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
   zf-H2C2_2  14 pyeCplCdkaFkt 26 
                   +C++C+k+Fk+
  CDO68833.1 115 SIKCSVCGKTFKN 127
                 579********98 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  21.4     0.001         3      75     194 ..     151     264 ..     126     294 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
  Asp-B-Hydro_N  75 ssvpeeeaev.vaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetv 169
                    + ++eee++   ae +e+la  k  +k++ee+kE l +    ++ ++ ++++++ +++l+ +k+llke++ +r+e+le  k+  +v  ++++e   
     CDO68833.1 151 RPLTEEEKKQkLAELKEKLA-AKRAAKAKEEAKESLANE---AIRRKANKDVNQIREELK-QKELLKEAEKKRKEKLEDAKARAAV--KAQIEADK 239
                    44566554440455556655.788899999999987665...555555556665555555.6788999999999999988888885..58899999 PP

  Asp-B-Hydro_N 170 seeakkdmkekaseeenekskepve 194
                    +e a+k ++eka +e +++ ++  +
     CDO68833.1 240 RERAAKAAREKALREGKAPPEQVAT 264
                    9999999999998876666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2862  (0.15963); expected 358.6 (0.02)
Passed bias filter:                      863  (0.0481343); expected 358.6 (0.02)
Passed Vit filter:                       168  (0.00937029); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.37s 00:00:01.21 Elapsed: 00:00:00.52
# Mc/sec: 2073.46
//
Query:       CDO68834.1  [L=831]
Description: hypothetical protein BN946_scf184805.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    8.9   7.2      0.085   12.6   0.8    2.4  3  DivIC     Septum formation initiator
        1.3    9.6  12.5       0.11   13.0   6.8    2.0  2  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.34   3.1e+03      43      69 ..     324     348 ..     322     349 .. 0.80
   2 ?   -3.4   0.1      0.99   8.9e+03      16      30 ..     394     408 ..     390     409 .. 0.61
   3 ?   12.6   0.8   9.5e-06     0.085      17      49 ..     418     450 ..     416     478 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.34
                 HHHHHCC-XXXXXXXXXXXXXXXXXXX CS
       DivIC  43 LeaevkdLksdedyieerARselglvk 69 
                 L +e+++L  d+   + +A +++++++
  CDO68834.1 324 LPQELERL--DQFKATTQAQYRFNMSR 348
                 66788888..78888899999999986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.99
                 XXHHHHHHHHHHHHH CS
       DivIC  16 llaykqlkqeiaalq 30 
                 l+++ +++++i+ +q
  CDO68834.1 394 LVRIADQRAQIQHIQ 408
                 556666666666655 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 9.5e-06
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLeaevkd 49 
                 +a+++l+  +a+ +ael++ +a+neeL+ae+++
  CDO68834.1 418 MALRKLNTSYAKRTAELQEERARNEELKAELEE 450
                 678999************************987 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.35   3.2e+03      87     127 ..     324     365 ..     322     369 .. 0.71
   2 ?   13.0   6.8   1.3e-05      0.11      11      98 ..     373     462 ..     370     468 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.35
      APG6_N  87 leeelealeeeeerfwreyne.lqlelleleeeldsleaqye 127
                 l +ele+l++ ++    +y+   ++  + l+   +  +aqy+
  CDO68834.1 324 LPQELERLDQFKATTQAQYRFnMSRRTMLLQSLAALSQAQYT 365
                 557888888888888888887677777777777777777775 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.3e-05
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeek..qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98 
                 l +l++ql++++  +d ++e l ++ +++ + ++  + +   +l   l+kl+   ++  +eL+e  + +eel+ael+++++ ++++ +e 
  CDO68834.1 373 LYNLTTQLSDLTVACDRLMETLVRIADQRAQIQHiqDLHIASALSMALRKLNTSYAKRTAELQEERARNEELKAELEEAWSMAQDMAQEM 462
                 56899***********************9888767533344567778***********************************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1226  (0.0683808); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 5211.84
//
Query:       CDO68835.1  [L=396]
Description: hypothetical protein BN946_scf184805.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-33  115.9   0.0    3.6e-33  115.5   0.0    1.3  1  APH             Phosphotransferase enzyme family
    0.00089   18.9   0.0     0.0016   18.1   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
     0.0069   15.7   0.0      0.013   14.8   0.0    1.5  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   6.1e-37   3.6e-33       7     217 ..      53     294 ..      48     368 .. 0.88

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 6.1e-37
                 -.SSCEEEEEEETT.-..-EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-..........B--B-CTTBS-EEETTEEEEEEE----EE-SS.... CS
         APH   7 ggasnrtylvttpa.g..ryvlrrnppa....raaeeirrevallrlLakagv..........pvPevlagdtddeeigllfalieyvpgrsllr.... 84 
                 + +sn+tyl+t+++    r+vlr +p +    r+a +i+re+ +l++L+  +           p+Pe++a+++  + ig++f++++y++gr++++    
  CDO68835.1  53 SQQSNPTYLLTDASySsaRFVLRKKPSGkllsRTAHQIEREYIVLQALHMYNTrpatppekkiPIPEPIALCKKSDIIGTPFYIMQYLDGRIFTDpyms 151
                 569*********998678**********9999*************9998554454788888888********************************999 PP

                 HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCC.HHHHHHHH......HHHHHHHH--S..SS-EEEE-SS- CS
         APH  85 klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesata.rllaselld.lleeleeq......vlaalaallpg..elptvllHgDl 173
                   s ++++e + + +++l++l q++p +l+l++ ++++++  rq+ s ++ ++++++  d +  e++ q      ++ + +++lp       +l+HgD+
  CDO68835.1 152 GVSLRDQRECWLDTVRVLGKLAQLEPCELGLSSLAPSTPYYPRQIKSLARiAHVQADAVDsETGERTGQiplfdeLIKWYKDNLPDerKMGLRLVHGDY 250
                 9999********************************************999998888888644444444677777**********9999999******* PP

                 SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHH.CSCHCC CS
         APH 174 hpgNllvdpddgrvtGviDfedaglgpplyDlavllrs.wtseld 217
                 +++Nl+ +p+++rv+G++D+e+++lg pl+D++ l+   w  + +
  CDO68835.1 251 KLDNLVYHPTENRVIGLLDWELCTLGSPLADFGNLV-VpWSIPKG 294
                 ***********************************9.44776655 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.6e-07    0.0016     123     192 ..     220     291 ..     193     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.6e-07
                     THHHHHHHHHTHHHHH.HCHGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHHHHHHHHTTE CS
  Choline_kinase 123 nledlekeleklekll.eelespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDlanhfiEwag 192
                     ++  +++ +++++  l +e +  + + H D    N++++ +e++++ l D+E ++      D++n +  w++
      CDO68835.1 220 QIPLFDELIKWYKDNLpDERKMGLRLVHGDYKLDNLVYHPTENRVIgLLDWELCTLGSPLADFGNLVVPWSI 291
                     56667889999999998999999***************9888887659******************999987 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-06     0.013     209     257 ..     237     282 ..     183     287 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-06
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDL 257
                 ++++    l+HGD+ + N+ ++ +e+     + l+D+ l+ +gSp  D 
  CDO68835.1 237 DERKMGLRLVHGDYKLDNLVYHPTEN---RVIGLLDWELCTLGSPLADF 282
                 444444569************99988...4788************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2759.81
//
Query:       CDO68836.1  [L=577]
Description: Alcohol oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-34  117.1   0.0      8e-26   91.1   0.0    2.2  2  GMC_oxred_N     GMC oxidoreductase
    3.6e-25   89.2   0.1    1.3e-24   87.3   0.0    1.9  2  GMC_oxred_C     GMC oxidoreductase
    2.4e-05   23.6   0.4      4e-05   22.8   0.4    1.3  1  Lycopene_cycl   Lycopene cyclase protein
     0.0011   18.1   0.1      0.025   13.7   0.2    2.3  2  FAD_binding_2   FAD binding domain
  ------ inclusion threshold ------
      0.067   12.8   1.8       0.15   11.6   0.8    2.0  3  DAO             FAD dependent oxidoreductase
      0.095   11.5   0.8       0.15   10.8   0.8    1.3  1  Trp_halogenase  Tryptophan halogenase
       0.15   12.3   0.4       0.48   10.7   0.4    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.5e-09   1.7e-05       1      41 [.       7      51 ..       7      86 .. 0.75
   2 !   91.1   0.0   3.1e-29     8e-26     122     294 ..      76     258 ..      67     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.5e-09
  GMC_oxred_N  1 vdelveggGsagsvvAaRLsedpst.svlvleaggreknrl...i 41
                 +d +++ggG+ag+v+A RL++ ++t ++lv+eag++ ++     +
   CDO68836.1  7 YDIIIAGGGTAGCVIAGRLATADATlNILVVEAGPNTRDDPlhtQ 51
                 799****************98776449********9887664333 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 3.1e-29
  GMC_oxred_N 122 kvetaqale.sdlhgvdgrlgvtekgkeesplnkallkaaeelGlp.vprdlngk...hqcGvcllgv.tcrtgarqstarawLrpalerpnleiltg 213
                  + et+q    +  hg  g+l+++  g + +   + l  aa+    + +++d+n+    ++ G    ++   +tg r+++ + ++ p  +++nl+iltg
   CDO68836.1  76 QCETYQIERgKPTHGYVGPLKISYGGFYPEVGQEFLNVAAQYDKARgLTDDVNDMfecNKYGRWP-KWiDMKTGTRSDVPHHYIYPQSSNENLRILTG 172
                  55555554567789999999997666666666666666664433335445555543225555433.3346**************************** PP

  GMC_oxred_N 214 akaekiilegrkkravGVeasdkkgt......vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknLqdH 294
                   +++++i+e  ++ a+GVe+  +k+        + +  a++ +v++aG++ sP +L+rSGlG  + L+++gv+  vdlp vG+n qdH
   CDO68836.1 173 YQVKRVIFE--GNMATGVEYVPTKRFhpdaksDTLIAKAKRLIVLSAGTFGSPAILERSGLGSSAVLEKIGVQQLVDLPgVGENYQDH 258
                  *********..9*********99998888864555667788899******************************************** PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.8   9.8e+03      75     102 ..     328     355 ..     322     357 .. 0.70
   2 !   87.3   0.0   5.2e-28   1.3e-24       1     131 [.     372     521 ..     372     528 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.8
                  CHHCHHHHH-EE-S--B-TT-B-STCGC CS
  GMC_oxred_C  75 alekfvkeavltsaHplGtcrMGadpkd 102
                   + ++  ++  +   ++G+++M + +++
   CDO68836.1 328 RWLDYYAHSPDKAVAWMGSMSMLTGERP 355
                  5666677777778889999999655554 PP

  == domain 2  score: 87.3 bits;  conditional E-value: 5.2e-28
                  ----EEEEEST.T-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.................TTEECCEECCCTTT.TS.HCHHCHHCHHCH CS
  GMC_oxred_C   1 PesrGrvtlss.sdptgaplidpnylsdprdlaalvealkaarkilaaaal.................dvleeeltpgaaee.tsdaavesdealekf 79 
                  P s G+++ +s ++ ++  +++p+yl+ p+d+a   + +k +r+++++++                    +  +  p++a   + + + e+++a+e++
   CDO68836.1 372 PMSIGYLHATSaDNVDALADFHPGYLDMPADMALHKWSYKRTREFARRMPSyrgevavrhpafnaigeAAAGDKQGPVPALApDINYSPEDEQAIEDY 469
                  56779******5555556699****************************766777777777888888844444444444333044445555569**** PP

                  HHHH-EE-S--B-TT-B-STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS CS
  GMC_oxred_C  80 vkeavltsaHplGtcrMGadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapga 131
                  +++av t +H +Gtc M ++++ +VVD++l+v+g+++L+++D S++Ps++ a
   CDO68836.1 470 IRQAVATAWHSMGTCGMKKREDGGVVDARLNVYGLEGLKIADMSICPSNVAA 521
                  ************************************************9765 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.4   1.6e-08     4e-05       1      36 [.       8      43 ..       8      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-08
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D+++ G+G Ag+ +A rl+ a + l+++++ea+p+ 
     CDO68836.1  8 DIIIAGGGTAGCVIAGRLATADATLNILVVEAGPNT 43
                   9********************************985 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   9.8e-06     0.025       1      35 [.       8      44 ..       8      52 .. 0.86
   2 ?    1.7   0.0     0.042   1.1e+02     152     204 ..     163     222 ..     151     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.8e-06
                   SEEEE--SHHHHHHHHHHHHTTT..-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl..kvavvekeqefg 35
                   D+i+ G+G AG++ A ++a a +  +++vve +++++
     CDO68836.1  8 DIIIAGGGTAGCVIAGRLATADAtlNILVVEAGPNTR 44
                   99*************8887755445********9987 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.042
                    HTCTEEEEESEEEEEEEECTTEEEEEEEEET......TTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 152 rkagvdfqerteadeLivedgrvtGavvenp......esgrevrirak.avvlatgGfgr 204
                     + ++++++ ++++++i e++ +tG++  +       +++ +   +ak  +vl +g fg 
     CDO68836.1 163 SNENLRILTGYQVKRVIFEGNMATGVEYVPTkrfhpdAKSDTLIAKAKrLIVLSAGTFGS 222
                    455689999*****************9998799999877777788999788999999997 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   5.8e-05      0.15       1      30 [.       8      41 ..       8      47 .. 0.92
   2 ?   -2.8   0.0       1.4   3.5e+03     163     203 ..     169     220 ..     155     237 .. 0.57
   3 ?   -2.5   0.0       1.1   2.9e+03      55      93 ..     272     304 ..     258     345 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.8e-05
                EEEEECTSHHHHHHHHHHHHTT....EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg....Vtllekgd 30
                d++i GGG +G+ +A  La++     ++++e+g+
  CDO68836.1  8 DIIIAGGGTAGCVIAGRLATADatlnILVVEAGP 41
                8*****************99877899*****984 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 EEESECEEEEEEEETCEEEEE.........EECTEEEE...EEEE...EEE--GGG CS
         DAO 163 ilegtevtgleeedgkvwgve.........rttpgend...aada...vVnaaGaw 203
                 il+g +v+++  e++ ++gve         +++    +   +a+a   +V++aG +
  CDO68836.1 169 ILTGYQVKRVIFEGNMATGVEyvptkrfhpDAK----SdtlIAKAkrlIVLSAGTF 220
                 555555555544444555555544443333222....0233223334688888876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSH CS
         DAO  55 selarlslealeelreleeelgididyrrtGllslaade 93 
                 + l  ++++ +ee++++ e+      ++++G+  la++ 
  CDO68836.1 272 HTLDAVAQDNVEEIEKWTEQ------WKENGTGMLATNG 304
                 34445555555555555554......7777777777653 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8     6e-05      0.15       1      33 [.       8      39 ..       8      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6e-05
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlves 33
                    +i+i+GGGtaG + A  la+a   +l++++ve+
      CDO68836.1  8 DIIIAGGGTAGCVIAGRLATAD-ATLNILVVEA 39
                    69******************99.66******96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00019      0.48       1      29 [.      11      41 ..      11      43 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrd 29
                   I G+G +G+v+A +La a   +++l++e+++
     CDO68836.1 11 IAGGGTAGCVIAGRLATAdaTLNILVVEAGP 41
                   67**************9744669****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4104.86
//
Query:       CDO68837.1  [L=480]
Description: hypothetical protein BN946_scf184805.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-65  219.9   0.0    6.6e-65  219.6   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    7.4e-09   35.4   0.0    3.2e-08   33.3   0.0    1.9  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    9.8e-05   21.8   0.0    0.00014   21.3   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00015   20.4   0.1    0.00029   19.5   0.1    1.5  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00047   19.2   0.0       0.17   10.8   0.0    2.2  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.24   10.1   0.0       0.34    9.6   0.0    1.2  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.6   0.0   2.2e-68   6.6e-65       3     363 .]      90     472 ..      88     472 .. 0.92

  Alignments for each domain:
  == domain 1  score: 219.6 bits;  conditional E-value: 2.2e-68
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    +inLg++ + +      +p++a++ +e al +   n y p++g   l++a+ +f+g+  +++l++e+++vv+sGa++++ a+ +++ l+pgde+++
     CDO68837.1  90 CINLGQGYMNFP-----PPAWAREGAEEALRSVAGNHYAPPKGTLRLRKAIKQFYGTTFGKELDPETEIVVTSGANEGQYAVWAAF-LEPGDEVII 179
                    89*****99885.....888888888889999******************************************************.********* PP

                    EESS-THHHHHHHHTTSEEEEEEBEET...........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEE CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyse...........edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynll 183
                    ++p++++y + +  +gg+ v++pl+++           +++++d+ +l++a++       +tk+i++++phNP G+v+t++ele+++++a+++ l+
     CDO68837.1 180 FEPFFDQYLPSIVFNGGKPVYVPLHPStetapgvkigkKTWNVDFAELKRAITP------RTKMIVLNTPHNPVGKVFTRNELEQVAQIAEEHDLI 269
                    ******************************************************......************************************ PP

                    EEEEETTTTCBSSSSHTHHHHGGSTTSTT..EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 184 lfvDeaYagfvfgsldavatranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqsele 275
                    +++De+Y+ +vf+  ++++  +   ++ +  +++vgs +K f+++G+RvG+i+g +a+++    + +++ +   s+lq+a+a+ l+ a ++  ++e
     CDO68837.1 270 VMSDEVYERLVFDGREFTR--FASLPGMWdrTVTVGSAGKLFAATGWRVGWIIGPPALIKPTLAATTRIVFcsNSPLQEAAATGLEQARERG-FFE 362
                    *************888766..333344444699*********************99888877777777666679*************99875.*** PP

                    HHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH..............CHHHHHHH..HHHTCTEEEEEGGGGTS.......TTEEEEEC CS
  Aminotran_1_2 276 emrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae..............takelskk..Lleevgvyvtpgtsftv.......pgrlRitv 348
                    +  +++++rr +l d++++lgl+++  ++ +f+l  +s+               +  ++  +  +++evgv  +p+++f++       ++  R+ +
     CDO68837.1 363 QQLAEYEARRAVLIDAFEKLGLEYTWTEGSYFVLLNISRVrwpegydfpemlegRGRDFKAAwfIANEVGVSSIPVSEFYCeehvdigQNYARFAF 458
                    ****************************************999888888777775566666699************************99****** PP

                    TTS-HHHHHHHHHHH CS
  Aminotran_1_2 349 Aglteeeleelveal 363
                     + + e+l+++ e+l
     CDO68837.1 459 -CKDIETLRRAGERL 472
                    .99999999998876 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.1e-11   3.2e-08      30     144 ..     141     273 ..     124     275 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.1e-11
                      HHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-T............TTSSB-GGGCGGG--TT CS
  DegT_DnrJ_EryC1  30 kafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdp............dtynidpaaieaaiter 111
                      + f + l  +  i v+sG +  + a  a  ++pgdeVI+    F     +++ +g kpv+v  +p            +t+n+d a++++ait+r
       CDO68837.1 141 TTFGKELDPETEIVVTSGANEGQYAVWAAFLEPGDEVIIFEPFFDQYLPSIVFNGGKPVYVPLHPstetapgvkigkKTWNVDFAELKRAITPR 234
                      556777777788999999999999999*********************************8655422222222222289*************** PP

                      EEEEE...EB-GGGB--...-HHHHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 112 tkaIl...pVhlyGqva...dmdalkaiaakhglkvieD 144
                      tk I+   p + +G+v+   +++++ +ia++h+l+v++D
       CDO68837.1 235 TKMIVlntPHNPVGKVFtrnELEQVAQIAEEHDLIVMSD 273
                      ****84445678899876779****************99 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.6e-08   0.00014      69     167 ..     172     273 ..     116     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.6e-08
                      -TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.............TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHH CS
  Beta_elim_lyase  69 qrgeevivtepahihfdetgaiaelagvklrdlknkea.............GkmdlekleaaikevgaheekiklisltvTnntagGqvvslee 149
                      ++g+evi+ ep   +fd      +++g k++ ++                  ++d+++l++ai++      ++k+i+l + +n   G+v + +e
       CDO68837.1 172 EPGDEVIIFEP---FFDQYLPSIVFNGGKPVYVPLHPStetapgvkigkktWNVDFAELKRAITP------RTKMIVLNTPHNP-VGKVFTRNE 255
                      55555555554...555555555566666666654444456666666666678999999999999......699********95.9******** PP

                      HHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 150 lrevaaiakkygiplhlD 167
                      l++va+ia+++++ ++ D
       CDO68837.1 256 LEQVAQIAEEHDLIVMSD 273
                      ****************99 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   9.7e-08   0.00029     123     175 ..     221     275 ..     148     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.7e-08
                      STTSHHHHHHHCCTTEEEEEEESS-TTTT---...-HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 123 dtsdleelekaikentklvylEtptnpllkvv...DiekiaklakkagvlvvvDnt 175
                      ++ d++el++ai+++tk++ l tp np+ kv     +e++a++a +++++v+ D +
       CDO68837.1 221 NV-DFAELKRAITPRTKMIVLNTPHNPVGKVFtrnELEQVAQIAEEHDLIVMSDEV 275
                      43.7899*********************99964448***************99976 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0014       4.3      60      93 ..     149     179 ..     127     182 .. 0.79
   2 !   10.8   0.0   5.7e-05      0.17     123     177 ..     218     275 ..     209     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0014
                  TGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEE CS
  Aminotran_5  60 seeeiiftsGtteainlvalslarslkpgdeivv 93 
                   e ei++tsG+ e+  +v  ++   l+pgde+++
   CDO68837.1 149 PETEIVVTSGANEGQYAVWAAF---LEPGDEVII 179
                  4689*********999999999...9******98 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 5.7e-05
                  TTSCBEGGGHHHH--TTEEEEEEESBETTTTE...B--HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5 123 eegeldldelekllnektklvaithvsnvtGt...iqpveeigklakkkgalvlvDaa 177
                  +++++d  el+ +++++tk++ ++   n  G     +++e+++++a +++ +v+ D +
   CDO68837.1 218 KTWNVDFAELKRAITPRTKMIVLNTPHNPVGKvftRNELEQVAQIAEEHDLIVMSDEV 275
                  67899**************************63336899**************99965 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011      0.34      86     168 ..     154     237 ..     135     280 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
                 EESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEE..E--E.B-TTS-BE---GGGGSHHHHHHHHHHSTTTGS CS
    OKR_DC_1  86 fvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvy..lepe.rnalgiiggidlkefeeetlkekikevpdaka 168
                 +v+ G   +  +v  a l+pgd v++           +v++g +Pvy  l+p+ + a g+  g ++  ++ + lk++i+  p +k+
  CDO68837.1 154 VVTSGANEGQYAVWAAFLEPGDEVIIFEPFFDQYLPSIVFNGGKPVYvpLHPStETAPGVKIGKKTWNVDFAELKRAIT--PRTKM 237
                 67889999999************************************66688877788887777776677777777764..55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3222.28
//
Query:       CDO68838.1  [L=288]
Description: hypothetical protein BN946_scf184805.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-05   23.7   0.9    6.2e-05   23.7   0.9    2.4  3  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
        5.8    6.0  14.5        7.3    5.7  14.5    1.1  1  SOG2          RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.9   6.9e-09   6.2e-05       1      93 []      24     125 ..      24     125 .. 0.76
   2 ?   -2.8   0.1       1.3   1.1e+04      45      58 ..     164     177 ..     155     189 .. 0.61
   3 ?   -1.2   0.6       0.4   3.6e+03      50      62 ..     236     248 ..     208     259 .. 0.60

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.9e-09
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdp.gtvtlvLcagssnnlksvkti..asgiknsdgsytwtvpa.......slesggaYflqivsesnegiyny 87 
                   t+P+ g+v++ g ++t tW+ ++t + +t+++ L++g + n+  ++t+   +g + s+++y+++ p+         +++  Yf q++s + +    +
    CDO68838.1  24 TAPGPGDVFKEGGQCTFTWDVDSTGEwKTMNVELMSGDNWNMVHITTVatLDGTDASKTTYSYDCPQvxxxxxxXXPNSPIYFYQFTSPDAA-NRTW 119
                   78*******************987779************99999999943457778889999988654444332344444588888865554.5778 PP

  GPI-anchored  88 SdrFti 93 
                   ++rF i
    CDO68838.1 120 TTRFAI 125
                   999876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
  GPI-anchored  45 ktiasgiknsdgsy 58 
                     +asg+++s+gs+
    CDO68838.1 164 SYLASGATGSTGST 177
                   56777777776665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.4
  GPI-anchored  50 giknsdgsytwtv 62 
                   + ++s++++t + 
    CDO68838.1 236 STNTSTTTTTANT 248
                   2222323333333 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  14.5   0.00082       7.3     248     359 ..     128     250 ..      97     276 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00082
        SOG2 248 sssgnsaspaangaqsetsersasssgvqssasstPlgegstsp..p.galsrqslsttgststltsssksrs.............ssrsntnasastp 330
                 ++ +++ +p+a+++  ++ ++   + + +s+a   P   +s ++  + ++ +++  +++++ +++  +s   s             ss    ++s+  p
  CDO68838.1 128 TNGNTTPAPNATQPDGSSIPWGLGALVDPSTAVAAPSYLASGATgsTgSTGTATGSTGSTAGPSPAAGSTAGSssgvgtpaaappaSS----SSSTASP 222
                 3444556666777777777777777777777777776666665533323333333333444444444444444334444444333211....2234445 PP

        SOG2 331 rslattpappasaesfastlt.asrintla 359
                 +s a+++app+ a+++  t+t +++ nt++
  CDO68838.1 223 SSGAQSSAPPSGASTN--TSTtTTTANTNS 250
                 5555555544444443..222233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 1929.38
//
Query:       CDO68839.1  [L=197]
Description: hypothetical protein BN946_scf184805.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-28   99.2   0.0    1.3e-17   63.9   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.14   12.5   0.1         40    4.6   0.0    2.9  3  Ish1          Putative stress-responsive nuclear envelope pro


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.5e-21   1.3e-17     109     195 ..       6      90 ..       4      92 .. 0.98
   2 !   33.5   0.0   2.8e-12   2.5e-08     230     292 ..      98     156 ..      94     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.5e-21
                   S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGG CS
  Aldo_ket_red 109 rpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggG 195
                   rp+ ++p+  ++++ +e+l + Gk+r+iGvSnfs+  le +++++kv +v +qve +++  + +  l ++c +kg+ l aysplg+G
    CDO68839.1   6 RPFEEHPNFVDAWAEMEKLLETGKVRSIGVSNFSINNLEILLQHAKVGPVNNQVEVHPC--HPQYDLKQYCDNKGILLSAYSPLGQG 90 
                   799999*****************************************************..************************99 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 2.8e-12
                   HHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 230 eelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   +++ ++a++h v++aq+a+++++  ++++ +++++s+++++++n+  +  kl++ee++++d +
    CDO68839.1  98 PDFAKVANDHAVTPAQVAVSWLV--ERGIPTLVKSSKVDRMKANITFV--KLTPEEMRTIDGI 156
                   6789*******************..***********************..**********987 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0044        40       8      19 ..      69      80 ..      67      86 .. 0.86
   2 ?    4.2   0.0    0.0062        56      11      20 ..     117     128 ..     116     137 .. 0.74
   3 ?   -1.0   0.0      0.26   2.3e+03       4       9 ..     180     185 ..     179     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0044
        Ish1  8 dLkkWLdshGip 19
                dLk+++d  Gi 
  CDO68839.1 69 DLKQYCDNKGIL 80
                9*********95 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0062
        Ish1  11 kWLdshGip..v 20 
                 +WL + Gip  v
  CDO68839.1 117 SWLVERGIPtlV 128
                 6********655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.26
        Ish1   4 WSdsdL 9  
                 W++++L
  CDO68839.1 180 WTYEQL 185
                 *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1439.24
//
Query:       CDO68840.1  [L=140]
Description: hypothetical protein BN946_scf184805.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 998.28
//
Query:       CDO68841.1  [L=241]
Description: hypothetical protein BN946_scf184805.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-06   27.4   0.0    6.4e-06   26.8   0.0    1.3  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.6e-10   6.4e-06       1      93 []      35     134 ..      35     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.6e-10
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdp...gtvtlvLcagssnnlksvkti..asgiknsdgsytwtvpa...slesgga.YflqivsesnegiynyS 88 
                   t+P+ g+v+  g ++t +W+++   +   +++++ L++g + n+  ++t+   +g + s +++++  p+   ++e+++a Yf q++s++ +g++ ++
    CDO68841.1  35 TAPGPGDVFREGGACTFSWTPDP--SgvwKHTDVELMTGDNLNMVFLTTVvtFDGTDPSLTTFSYPCPDcymQVEPNSAiYFYQFSSDAAPGALMWT 129
                   78*******************54..2568******************999555677888788888887788899999989******99999****** PP

  GPI-anchored  89 drFti 93 
                    rF i
    CDO68841.1 130 ARFAI 134
                   ***87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1705.94
//
Query:       CDO68842.1  [L=230]
Description: hypothetical protein BN946_scf184805.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-19   68.8   0.0    6.7e-19   68.5   0.0    1.1  1  RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-


Domain annotation for each model (and alignments):
>> RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.7e-23   6.7e-19       5     140 ..       1     223 [.       1     224 [. 0.73

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 3.7e-23
                   ESSEESSEEE--HHHHTCC................................................................C-EE-SSS...... CS
  RNase_H2_suC   5 LPfsiktdgpantahyfqprksak........................................................pahkegadqqel..... 40 
                   +Pf+i ++gpa +++yf+ ++  +                                                        p                
    CDO68842.1   1 MPFHIAYSGPAPVSTYFRTQSAREptfgrqaknvetrvaaleaqspsnshttlladsqslmassssstlvdvdmhqsdtlP----------Sassqa 87 
                   6******************76666788888888888887776666666555555555555555555555555555555544..........055555 PP

                   ....EEEEETTEEEEEEEEE--TTEEEEEEECCTTS-EEE..............SEEEEEEESS---S-SGGGTT--EE.................. CS
  RNase_H2_suC  41 ....lraaFRGRqlvGqelsvppayrgiilsttnppnkgg..............ldsddeqeeeddeegegeetavtks.................. 101
                       ++ aFRGR ++G ++ +p +y+gi+l+t   +  +g              +              + + t +t+                   
    CDO68842.1  88 tsrhYTSAFRGRSMHGLRIDLPDGYSGIVLQTPDDTTVNGrapasraaeearpkS------------RAKAKPTVRTTRrakraeedvedavedplg 172
                   5555****************************99998777665554444444431............333333333333555666666666888888 PP

                   ............EEEEEEESEEEEECECS--..-TTSHHHHHTTHHHHHHH CS
  RNase_H2_suC 102 ...........ileptaefesftlWkhDeap.eggDefvrgvgewlglvea 140
                              +l+p a+f sf+lW  D    eg De++r ++ew +l++ 
    CDO68842.1 173 aaqllwegstrVLRPAAQFASFVLWHPDIPVdEGRDEYIRSLTEWTKLAAE 223
                   88899999999*****************98889***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1725.75
//
Query:       CDO68843.1  [L=789]
Description: hypothetical protein BN946_scf184805.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-20   72.2   0.6    1.3e-16   60.4   0.1    2.4  2  Pkinase_fungal  Fungal protein kinase
    0.00053   19.4   0.0    0.00094   18.6   0.0    1.3  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.011   15.6   0.2      0.025   14.5   0.2    1.5  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   8.8e-05      0.53      68     114 ..     359     405 ..     353     417 .. 0.88
   2 !   60.4   0.1   2.1e-20   1.3e-16     315     407 ..     516     612 ..     506     613 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.8e-05
  Pkinase_fungal  68 cgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGl 114
                      +  +++w++DR G ++s+ ++i  d  +f+ ++ +l   + ++ G+
      CDO68843.1 359 QDEVVHVWLYDRDGGIQSTGLNILIDLPRFLVLLFALQRFEFKDFGF 405
                     455679*******************************9999999998 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 2.1e-20
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee......HsyrhDLESffyv 403
                      +++h       gi HrDiS +N++   + +++  + +L D Dla++ +d+++++ + e tGT++Fma+++l++e         y hDL  f +v
      CDO68843.1 516 LVTAHYHSW-RNGIQHRDISLGNLMCRGN-DKDPVCAVLNDWDLAVDAKDPNTTHTSIEVTGTVPFMALDLLSEEAfrgnvaILYHHDLKAFVWV 608
                     577777777.89**************954.555899*************************************6444444567788********* PP

  Pkinase_fungal 404 llwi 407
                     l+w 
      CDO68843.1 609 LIWA 612
                     ***7 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.6e-07   0.00094      93     174 ..     502     590 ..     481     597 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.6e-07
                 SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE...EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCB CS
     Pkinase  93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge...lKitDFGlakelesssk...ltsfvgtseYlAPEvlkeney 174
                  +l++e+  + + q++++  + +++gi HrD+   N+++  ++++     + D++la  ++  ++     +++gt  ++A  +l+e+ +
  CDO68843.1 502 ITLPDEHFIRGWFQLVTAHYHSWRNGIQHRDISLGNLMCRgNDKDpvcAVLNDWDLAVDAKDPNTthtSIEVTGTVPFMALDLLSEEAF 590
                 34788888888899999*999*******************6666699999**********9999866666789*******999987665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   4.2e-06     0.025     151     197 ..     497     559 ..     408     561 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.2e-06
                 H...............HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE-.--TT-E CS
         APH 151 q...............vlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGvi.Dfedag 197
                 +               + + + a+ + + + ++ H+D+++gNl+ +  d+++v +v+ D+++a+
  CDO68843.1 497 RlqhlitlpdehfirgWFQLVTAHYH-SWRNGIQHRDISLGNLMCRgNDKDPVCAVLnDWDLAV 559
                 23333333333322225555555555.699****************988899989998999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5233.72
//
Query:       CDO68844.1  [L=382]
Description: hypothetical protein BN946_scf184805.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2682.70
//
Query:       CDO68845.1  [L=374]
Description: hypothetical protein BN946_scf184805.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-06   28.8   4.2    2.7e-06   28.2   4.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    7.8e-05   22.4   0.0     0.0002   21.1   0.0    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.12   12.2   0.2       0.25   11.2   0.2    1.5  1  Vsr            DNA mismatch endonuclease Vsr


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   4.2   4.5e-10   2.7e-06       1     215 [.      26     352 ..      26     357 .. 0.50

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.5e-10
                    EEEE--GC.....GC...HHHH.HHHHCCTCEEEEE--TTS.T................S-GGCS........--HHHCHHHHHHHCCTT...... CS
  Abhydrolase_6   1 vlllHGagssassWl...vapL.aallaagvhvlapDlpGh.G................rsdppp........ldledladlaalldelaa..... 62 
                    v+ +HG+      W+   +a L   ++++gv+++ + ++ + G                +   pp                 a++l+ +       
     CDO68845.1  26 VIIVHGFV-----WHggiFAKLvPIARNRGVRIILLNRRDYpGskphtteergllppisE--APPgdkdaierG--------AEALEMFMRqrafe 106
                    789***66.....84455566646677777999********8854444444444333220..222222222220........22222222233334 PP

                    ......................TTSEEEEEETCHHHHHHHHHHCC..............EEEEES-.....----TTTS----TTHHHHHHTT-C. CS
  Abhydrolase_6  63 .....................gggpvvlvGHSlGGalalaaapla............lvvgvlldppp...talpagllaaalelllallallrl. 121
                                          +g vvlvG+SlG + + a++ +             ++++v+    p   +++p + ++++ +ll++ l l+ + 
     CDO68845.1 107 lykclqavvedrnippfrpasKTGGVVLVGWSLGSLFVNALLGYVssfpvgrirlvhFIRRVIWQDVPaclLGYPYPTQDPYNPLLDTSLNLEEKa 202
                    4444445555666688888899999**********9888855555788888889988666666666454665666666777777777666644444 PP

                    ...CCCHCCHS-HS.CCCCHHHCCCCHCHCCCGHH.......................................HHCCHHCHTTCCHHTT-TTGC. CS
  Abhydrolase_6 122 ...lawlsreplpr.lfladedadaawrarlarla.......................................allaglgllpaaawadlpvpl. 173
                         wl+ + +++ ++ ++++   + r +l++++                                       +              +l+ +  
     CDO68845.1 203 halMKWLTSY-FSHaDLDNPDA--LERRKALRHPSsalarmsneegecimhvppgspggsdwtllfgcyiygvfP--------------RLRKRAl 281
                    4434555432.22213333222..222222222223344444555555555555554444333322222232220..............2222221 PP

                    ..EEECTT-C...........................HHHHCHHCCCH...STTEEETCE...SSS-HHHHSHH CS
  Abhydrolase_6 174 ..lvlggeDp...........................lvprllerlla...qagarlpvvlpgaGHlphleepd 215
                       v  ++D+                           l ++l+++ +    ++ +++ v l+ga H+ h ++p+
     CDO68845.1 282 ypAV--ADDMgedwsnielrhiwgdctvwevpygviqLRQELAKAEGEgrsVRPVTM-VRLRGANHFAHWDHPE 352
                    1111..222233224444444333334444444533222233333333435555555.************9*95 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.4e-08    0.0002       2      91 ..      25     148 ..      24     162 .. 0.81
   2 ?   -2.5   0.0      0.54   3.3e+03     241     257 .]     335     351 ..     321     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.4e-08
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH....................................SHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddy....................................gtasvad 61 
                    +++i+hG+   ++++a+  l+p    +g ++ill+ r ++ S+p+ ++  ++                                     ++ +v +
     CDO68845.1  25 TVIIVHGFVWHGGIFAK--LVPIARNRGVRIILLNRRDYPGSKPHTTE--ERGllppiseappgdkdaiergaealemfmrqrafelykCLQAVVE 116
                    69***************..88666666*******************97..4446666677777777777888888888888888888554444555 PP

                    HHHHH...HHHCTTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1  62 dldri...ldalgddkltlvGhSmGGmialaya 91 
                    d + i   + a + + ++lvG+S+G++++ a++
     CDO68845.1 117 DRN-IppfRPASKTGGVVLVGWSLGSLFVNALL 148
                    555.3555********************99987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.54
                    EEEEEETCSSSHHHHSH CS
  Abhydrolase_1 241 rlvvisdagHlaflegp 257
                    + v++ +a H+a++++p
     CDO68845.1 335 TMVRLRGANHFAHWDHP 351
                    67888999******986 PP

>> Vsr  DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   4.1e-05      0.25      47      70 ..      14      37 ..       7      41 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.1e-05
                T--SEEEGGGTEEEEEE-TTTTT- CS
         Vsr 47 GkPDvvlkkykvvvFvhGcFWHgh 70
                G P+   ++y +v+ vhG  WHg 
  CDO68845.1 14 GAPEGHANDYTTVIIVHGFVWHGG 37
                78888899**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2752.02
//
Query:       CDO68846.1  [L=353]
Description: hypothetical protein BN946_scf184805.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-60  202.2  14.8    5.8e-58  196.3  14.8    2.1  1  Ytp1            Protein of unknown function (Ytp1)
  ------ inclusion threshold ------
       0.44   10.7  20.2        1.3    9.2   0.7    4.6  5  SdpI            SdpI/YhfL protein family


Domain annotation for each model (and alignments):
>> Ytp1  Protein of unknown function (Ytp1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3  14.8   6.4e-62   5.8e-58       2     276 ..      47     307 ..      46     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 6.4e-62
        Ytp1   2 afvqvltgvvvllglgrgeevfnllAHfikGgvFflyG.lltlarylGafaelGwaWnkkpkksksekrivsaefveslliflYGi..tnvFlEhlagk 97 
                 ++vq+l+g++++ g++rg++++++lAH+i+G+ F++yG ++++ +++G       aW +++         +s ++++s++i+l+Gi   n+F+Eh+++ 
  CDO68846.1  47 GWVQMLFGAITFGGYCRGDNLGQCLAHYIMGSGFIAYGtIMAILLLVGE------AWVRRSG--------RSPDWWDSWVIMLWGIgeLNTFTEHRGS- 130
                 8*************************************9********99......9988844........799***********984469*****984. PP

        Ytp1  98 ggewsakdlqHvsiavlfiggGllGlllesklvrkllekaveeaakeaeekakvslnplPalvilltGilmsaHaQaselstkiHkqwGllLlaaavaR 196
                   +ws kd+qH+ ++vl+++gG+lG++l++++                       ++++Pa++i+ltG++ms HaQa++lstk+H+++G++L+ a++aR
  CDO68846.1 131 --SWSVKDMQHTILGVLWWAGGILGIYLSRNN----------------------QRSVVPAFIIILTGWAMSDHAQALMLSTKVHALFGYTLMSAGLAR 205
                 ..6**************************988......................1468***************************************** PP

        Ytp1 197 litylllllkp....................pssvl......psrpptellasflLiagglvFmesteetvealeeegldamfllnvtvgltallmawv 269
                 +i+++++  k+                    +   +      psr  + +l++flL+a+gl+Fm++t+e ++ ++++g+d++++++++++++++l++ +
  CDO68846.1 206 IIEICFVAPKYalevvpgdghsehtldgareD---VatapssPSRA-FRHLPPFLLVASGLLFMSATDEELHFVNDNGMDHVTYILIMFSIAFVLYTLI 300
                 *******9999777777777766666666552...04443335554.6899***********************************************9 PP

        Ytp1 270 llllalk 276
                 ++l+ l+
  CDO68846.1 301 VTLINLY 307
                 9999876 PP

>> SdpI  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.54   4.9e+03      26      44 ..      36      54 ..      34      62 .. 0.63
   2 ?    5.7   0.6    0.0018        16      25      55 ..      72     118 ..      70     121 .. 0.84
   3 ?    9.2   0.7   0.00015       1.3      26      57 ..     139     172 ..     134     178 .. 0.70
   4 ?    0.9   0.0     0.057   5.1e+02      24      42 ..     189     207 ..     188     220 .. 0.85
   5 ?    6.7   0.3   0.00088       7.9      32      66 ..     256     301 ..     248     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.54
        SdpI 26 hrfagklwiiaGlilllla 44
                h + gk   i+G++ +l++
  CDO68846.1 36 HGLVGKAYPILGWVQMLFG 54
                5566777777777766666 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0018
        SdpI  25 ahrfagklwiiaGlilllla................lgavvlvllvl 55 
                 ah + g  +i+ G i+++l                 ++++v++l+++
  CDO68846.1  72 AHYIMGSGFIAYGTIMAILLlvgeawvrrsgrspdwWDSWVIMLWGI 118
                 899**********9999999999999999999988777777777665 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00015
        SdpI  26 hrfagklwiiaGlilllla..lgavvlvllvlvl 57 
                 h + g lw+++G++ + l+  ++ +v+  ++++l
  CDO68846.1 139 HTILGVLWWAGGILGIYLSrnNQRSVVPAFIIIL 172
                 999****************873333333333333 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.057
        SdpI  24 kahrfagklwiiaGlilll 42 
                 k h ++g++++ aGl+ ++
  CDO68846.1 189 KVHALFGYTLMSAGLARII 207
                 6899**********98655 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.00088
        SdpI  32 lwiiaGlilllla...........lgavvlvllvlvlllvivpiiy 66 
                 l++++Gl+++ ++           ++ v+++l+++ +++v+ ++i+
  CDO68846.1 256 LLVASGLLFMSATdeelhfvndngMDHVTYILIMFSIAFVLYTLIV 301
                 6788999999999***********8889999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2357.19
//
Query:       CDO68847.1  [L=340]
Description: hypothetical protein BN946_scf184805.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-09   35.5   6.6    1.1e-08   34.8   6.6    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    4.9e-08   32.7  10.0    7.8e-08   32.1  10.0    1.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    3.3e-07   30.3  11.2    5.5e-07   29.6  11.2    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
      5e-07   29.9   8.8    7.9e-07   29.3   8.8    1.3  1  zf-RING_2     Ring finger domain
    8.9e-07   28.8   8.3    1.4e-06   28.1   8.3    1.3  1  zf-RING_5     zinc-RING finger domain
    1.1e-06   28.5   6.8    4.1e-06   26.7   7.2    1.8  1  zf-RING_UBOX  RING-type zinc-finger
    2.3e-06   27.3   9.9    4.2e-06   26.5   9.9    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00021   21.1   9.0    0.00021   21.1   9.0    1.6  2  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.011   16.1   0.2      0.018   15.4   0.2    1.3  1  Syntaxin_2    Syntaxin-like protein
      0.037   13.8   6.2      0.067   13.0   6.2    1.4  1  zf-MIZ        MIZ/SP-RING zinc finger
      0.093   13.0   3.2        1.6    9.0   0.5    2.5  2  HALZ          Homeobox associated leucine zipper
       0.18   11.6   6.0       0.35   10.7   6.0    1.6  1  zf-RING_4     RING/Ubox like zinc-binding domain
       0.85    9.8   5.8        1.7    8.8   5.8    1.4  1  zf-RING_10    zinc RING finger of MSL2
        1.1    9.3   4.6        2.4    8.2   4.6    1.5  1  HypA          Hydrogenase/urease nickel incorporation, metall


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   6.6   8.5e-12   1.1e-08       3      46 ..       4      51 ..       2      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 8.5e-12
                SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.....TT-B-TTT--B CS
  zf-C3HC4_3  3 eeCviClerprnvvllpCgHlvlCeeCaekllk.....rkkkCpiCrrp 46
                 +C iCl++ +  v  pCgHl +Ce+C++++ +      +++Cp Cr+ 
  CDO68847.1  4 LTCGICLDQLKIPVSTPCGHL-CCEACLTSYIEasadaLNASCPTCRAT 51
                68*******************.*********99999999********86 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1  10.0   6.1e-11   7.8e-08       1      41 []       6      48 ..       6      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6.1e-11
                -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...TSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvkCPlC 41
                C iCl+ +k+p+ +++C+H +C++C++++++      + +CP+C
  CDO68847.1  6 CGICLDQLKIPV-STPCGHLCCEACLTSYIEAsadALNASCPTC 48
                99**********.******************998777778**** PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6  11.2   4.3e-10   5.5e-07       1      42 []       6      48 ..       6      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.3e-10
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCisslqkepdge.qllCplC 42
                C iCld L+ Pvs +CGh +C  C++s+ + ++++ + +Cp C
  CDO68847.1  6 CGICLDQLKIPVSTPCGHLCCEACLTSYIEASADAlNASCPTC 48
                99*************************99877655169***** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   8.8   6.2e-10   7.9e-07       2      44 .]       5      49 ..       4      49 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 6.2e-10
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.....CPlCr 44
                +C+ICl++l+    ++ +pCgH +++ Cl+ +++ s       CP+Cr
  CDO68847.1  5 TCGICLDQLKI---PVSTPCGHLCCEACLTSYIEASADalnasCPTCR 49
                7********64...44556**************999999********9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   8.3   1.1e-09   1.4e-06       2      43 ..       6      49 ..       5      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.1e-09
   zf-RING_5  2 CnkCfeklskeekfyltsCgHifCekClkkll.....ekeavCpiCr 43
                C +C ++l   + ++ t+CgH +Ce+Cl+ +      + +a Cp+Cr
  CDO68847.1  6 CGICLDQL---KIPVSTPCGHLCCEACLTSYIeasadALNASCPTCR 49
                ********...99*********************************9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   7.2   3.2e-09   4.1e-06       1      32 [.       6      39 ..       6      48 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.2e-09
  zf-RING_UBOX  1 CpIClelftdPlv.lpCGHtFCreClw..elsksl 32
                  C ICl++++ P v +pCGH  C+ Cl+   + +  
    CDO68847.1  6 CGICLDQLKIP-VsTPCGHLCCEACLTsyIEASAD 39
                  9**********.867***********434444444 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   9.9   3.3e-09   4.2e-06       2      40 .]       6      48 ..       5      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.3e-09
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeek....n.eCPlC 40
                C iCld lk p v+tpCgH  C+ C+  ++e++    n +CP+C
  CDO68847.1  6 CGICLDQLKIP-VSTPCGHLCCEACLTSYIEASadalNaSCPTC 48
                ***********.**************99998754444569**** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   9.0   1.6e-07   0.00021       1      40 [.       6      52 ..       6      55 .. 0.87
   2 ?   -3.5   0.0         8     1e+04       5      19 ..     170     184 ..     168     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.6e-07
  Prok-RING_4  1 CvlCgeqekkailepCgHlvCkeCfdsk.dls......sCPlCqrri 40
                 C +C  q k ++  pCgHl C++C+ s  + s      sCP C+  +
   CDO68847.1  6 CGICLDQLKIPVSTPCGHLCCEACLTSYiEASadalnaSCPTCRATF 52
                 999**********************9986555677789*****9765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8
  Prok-RING_4   5 geqekkailepCgHl 19 
                  +++e++++l+  +H+
   CDO68847.1 170 TTHENTVVLGATKHM 184
                  577899999999997 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.2   1.4e-05     0.018      27      94 ..      94     166 ..      79     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
  Syntaxin_2  27 dteelreklhelieeinelikktnellkklsqldnsssds.....qqklqkekLkkdfkealqeFqkiqrqya 94 
                  ++elr ++  l+++i  l+++   l+ ++++ ++ s+ +      ++l+ke L ++++++ +++  +  +y+
  CDO68847.1  94 SQRELRAEVARLTDKIDALVHDKALLMDRCEAAIRASQAHaqgerDERLAKEHLERELRDLRKKYDTVKGKYK 166
                 57899*****************************999999999999*******************99998886 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.2   5.2e-05     0.067       3      49 ..       4      50 ..       3      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
                SB-TTTSSB-SSEEEETT--SS--EE.HHHHHHHHHHS---B-TTT-- CS
      zf-MIZ  3 lkCplslsrikiPvrgekCkHlqCfd.lesylelnertetWnCPvCsk 49
                l+C + l+++kiPv +  C Hl C   l+sy+e ++ + + +CP C +
  CDO68847.1  4 LTCGICLDQLKIPV-STPCGHLCCEAcLTSYIEASADALNASCPTCRA 50
                79***********9.789*****9763689****************86 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.055        70      30      41 ..      97     108 ..      93     121 .. 0.63
   2 ?    9.0   0.5    0.0012       1.6       3      26 ..     147     170 ..     146     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.055
        HALZ  30 kLkaelqeLkek 41 
                 +L+ae+++L++k
  CDO68847.1  97 ELRAEVARLTDK 108
                 566666666655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
        HALZ   3 LErDYdvLKasYdaLksdydsLkk 26 
                 LEr+ + L+++Yd  k +y  Lk 
  CDO68847.1 147 LERELRDLRKKYDTVKGKYKMLKT 170
                 9******************99986 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.0   0.00027      0.35      19      47 ..      20      52 ..       6      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
   zf-RING_4 19 eCgyqiClfCyhrile....eeegrCPaCreeY 47
                +Cg+  C  C++  +e    + ++ CP Cr ++
  CDO68847.1 20 PCGHLCCEACLTSYIEasadALNASCPTCRATF 52
                79**99****9999985443359*******988 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.8    0.0013       1.7       1      45 [.       4      50 ..       4      59 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
  zf-RING_10  1 lsCvvCckLLvdPlepkekeCqHyvCrlCvgk.....kkklkpsCsqCkd 45
                l+C +C   L+ P++   + C+H  C  C+          l++sC++C+ 
  CDO68847.1  4 LTCGICLDQLKIPVS---TPCGHLCCEACLTSyieasADALNASCPTCRA 50
                678888888887765...58*********875222226789*******84 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.6    0.0018       2.4      56      95 ..       9      51 ..       1      58 [. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
                TTTT-EEEEEEE--EEEETTTS-EEECHH.H..HHS-TTTSSS CS
        HypA 56 vlegaeLeieevpvkvrCreCgkefelee.k..alrCpkCgsa 95
                +l++ ++ +++   +++C+ C +++ +++ +  +++Cp+C ++
  CDO68847.1  9 CLDQLKIPVSTPCGHLCCEACLTSYIEASaDalNASCPTCRAT 51
                567777788889999*******99987664346779****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2527.68
//
Query:       CDO68848.1  [L=293]
Description: hypothetical protein BN946_scf185035.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-25   87.5   5.3    5.7e-15   55.6   5.8    3.2  2  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
    1.5e-06   28.0   1.9    2.3e-05   24.0   1.8    2.1  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.7e-09   1.5e-05       4      73 ..     106     177 ..     103     182 .. 0.85
   2 !   55.6   5.8   6.3e-19   5.7e-15      65     140 ..     197     286 ..     189     288 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.7e-09
  Steroid_dh   4 pllivakavlfcvlnGllqarylsyyqpy..aedylkkdrlllgivlfvlgmliniksdiiLrelrkegetk 73 
                  ++  + a+ f++lnGll ++y s        e  + + r+  g+++++lg++ ni  d iL ++r++ ++k
  CDO68848.1 106 HIMVPLSAIGFNTLNGLLLGTYRSSPSAAayIEGAFARPRFWAGVTIWALGFVGNIAHDEILLNIRRKAKAK 177
                 5677789999************9976554447788888*************************999887765 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 6.3e-19
  Steroid_dh  65 elrkegetkykiprgglFelvsapnyfgEilewigyalvtk...slaalaFal...........ftvlnltvraaahhkwykkkfekYpk 140
                 + +k++++ y ip g l+ ++s pnyf E lew+g+a+++    s+ ++a  +             v  + +ra + h+wy+++f++Ypk
  CDO68848.1 197 KVKKNKQEHYAIPHGLLYRYISYPNYFCEWLEWLGFAFAASpapSFSSFAAYFttasppwlfffSEVFLMLPRAWKGHQWYHNRFPDYPK 286
                 5799**********************************9752223333221122334443332156777899*****************8 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   1.8   2.6e-09   2.3e-05     120     201 ..     145     257 ..     116     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.6e-09
     DUF1295 120 ldviglalwlvgivlealaDqQlsaf............................kkdpankgkvldsG.LwrysRHPNYfgealiWwglflialea... 186
                   ++g+++w +g+v++++ D+ l +                             kk+ + +   + +G L+ry   PNYf e+l W+g+  +a  a   
  CDO68848.1 145 RFWAGVTIWALGFVGNIAHDEILLNIrrkakakgkaresaegtgeagddnngkvKKNKQEHY-AIPHGlLYRYISYPNYFCEWLEWLGFAFAASPApsf 242
                 55889999999999999999999999999999999999999999999999986655555444.4555527*******************9999887333 PP

     DUF1295 187 leglealaiagplll 201
                 ++ + + + a+p +l
  CDO68848.1 243 SSFAAYFTTASPPWL 257
                 344445555566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2128.66
//
Query:       CDO68849.1  [L=411]
Description: hypothetical protein BN946_scf185035.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-15   56.8   0.0    4.4e-15   55.4   0.0    1.7  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   2.4e-19   4.4e-15      35     197 ..     182     389 ..     133     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 2.4e-19
  Pkinase_fungal  35 eeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptivte.sdgrrsy 128
                     +e+++k l q+++ya  +f+ q +R ++  +t++gs++r+ + DR+Gv  ++r++ +k+pek+++++ +l+ ++ ++ G D + +      +++y
      CDO68849.1 182 AEERRKVLGQIMTYAYLIFTGQ-QRTHLFNVTIFGSHARISRWDRAGVTTTKRFNYKKEPEKLLEFFWRLSRLTPAQRGHDASAT-LvGPRSPDY 274
                     457888999**********998.599********************************************************996.435566666 PP

  Pkinase_fungal 129 ei.........................................kaeeeketeklele..eplarqraivgRgTtcwrarkeger.gkeyvvKdsW 179
                      +                                         + + +  + ++ l+    ++  + +vgR+T+ + +   ++  g+ + vKd+W
      CDO68849.1 275 KLmrsradkprlvgglafqehageafqkslkdsrwwklkvddeSDPASGPKTRYFLVgrPHFTAAKGLVGRATRGYVGIDLEDPaGPFVYVKDAW 369
                     66677888888889**************************998556667778888887445777889***********9998885666669**** PP

  Pkinase_fungal 180 rdaerk..sEaelLkkaeer 197
                     r ++ +  +E+e+L   + r
      CDO68849.1 370 RVDHEGirKEGEILGYLNAR 389
                     *6655446******988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2925.42
//
Query:       CDO68850.1  [L=373]
Description: hypothetical protein BN946_scf185035.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-19   68.9   0.0    5.1e-19   68.3   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.037   13.4   0.0    1.3  1  Pkinase         Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   5.7e-23   5.1e-19     300     407 ..       2     119 ..       1     120 [. 0.87

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 5.7e-23
  Pkinase_fungal 300 ekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskke.......gerkglLiDLDlakelsddssesga..rertGTleFmaiev 385
                     +++++ kel++ ++ +I++h + + k+gi+HrD+S++N+li  +++        ++r glL D +l k+++ ++ ++g+   +rtGT +F++   
      CDO68850.1   2 KDFKNGKELVTLIARCIEAHGNAY-KKGIMHRDVSAGNVLIAVDESVgkngelvRRRDGLLTDWELSKNVDPQKGSKGPrqPDRTGTWQFLSAHA 95 
                     578999******************.****************9443335668899*****************877777665589************ PP

  Pkinase_fungal 386 lkg..eeHsyrhDLESffyvllwi 407
                     l    ++  + + +ESff vll+ 
      CDO68850.1  96 LAHpsKNIDIEDEMESFFHVLLYY 119
                     **643448899***********96 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.1e-06     0.037     108     169 ..      18      96 ..       4     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHHTTEE-SS-SGGGEEEE.TTTE............EEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH CS
     Pkinase 108 legleylHskgiiHrDlKpeNiLid.ekge............lKitDFGlakelesssk.....ltsfvgtseYlAPEvl 169
                 +e+    ++kgi+HrD+   N+Li  + +               +tD+ l+k+++ ++        +++gt ++l+   l
  CDO68850.1  18 IEAHGNAYKKGIMHRDVSAGNVLIAvD-ESvgkngelvrrrdGLLTDWELSKNVDPQKGskgprQPDRTGTWQFLSAHAL 96 
                 555556799***************954.33355556655555779*******9999887778877788888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2880.46
//
Query:       CDO68851.1  [L=308]
Description: hypothetical protein BN946_scf185035.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.097   11.9   0.0       0.15   11.3   0.0    1.3  1  Zeta_toxin  Zeta toxin
       0.21   10.8   0.0       0.21   10.8   0.0    1.1  1  KAP_NTPase  KAP family P-loop domain


Domain annotation for each model (and alignments):
>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.15      14      54 ..      26      69 ..      13      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdele...rqgnvvrldpDdl 54
                  P ++ + G +G+GK++l + l+d l+   ++ +v +++ Ddl
  CDO68851.1 26 VPPLIVGVQGPQGSGKTYLTSILRDVLQgppHNLSVAVFSLDDL 69
                45778888999****************99988889999999987 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.3e-05      0.21      19      48 ..      27      56 ..      21     243 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.3e-05
  KAP_NTPase 19 tpivvgLygkWGsGKssllnkledelkefa 48
                +p++vg++g+ GsGK++l   l+d l+   
  CDO68851.1 27 PPLIVGVQGPQGSGKTYLTSILRDVLQGPP 56
                89*********************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2310.38
//
Query:       CDO68852.1  [L=73]
Description: hypothetical protein BN946_scf185035.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-06   27.8   0.2    8.3e-06   25.5   0.2    1.8  1  ubiquitin    Ubiquitin family
    2.2e-05   24.8   0.1    9.1e-05   22.8   0.1    1.8  1  Ubiquitin_2  Ubiquitin-like domain
     0.0085   15.9   0.1      0.059   13.2   0.1    1.9  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.015   15.4   0.0    1.1  1  PI3K_rbd     PI3-kinase family, ras-binding domain
      0.013   16.1   0.0      0.015   15.9   0.0    1.1  1  RAWUL        RAWUL domain RING finger- and  WD40-associated u
      0.046   13.5   0.0        3.7    7.4   0.0    2.1  2  DUF4431      Domain of unknown function (DUF4431)


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   2.8e-09   8.3e-06       8      67 ..      13      72 ..       6      73 .] 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.8e-09
                SEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEE CS
   ubiquitin  8 gkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhl 67
                g+k+ ++ +++dtv +lK  ia+++g    +++L     + +d+ tl++y i+dg  l++
  CDO68852.1 13 GRKVRVKCSPDDTVGDLKRLIAAQTGTDHTKIQLKKWYTIYKDHITLADYEIHDGMSLEM 72
                78999*********************9999999976666669999**********99987 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   3.1e-08   9.1e-05      17      78 ..      17      70 ..       4      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.1e-08
                 EEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEE CS
  Ubiquitin_2 17 errfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmri 78
                   + s+++t+++lK+ +   tGt+ ++ +L+          +++ +d+ +L++Y+++dgm +
   CDO68852.1 17 RVKCSPDDTVGDLKRLIAAQTGTDHTKIQLKK--------WYTIYKDHITLADYEIHDGMSL 70
                 57899******************998777765........489999**************87 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1     2e-05     0.059       8      70 ..      11      72 ..       4      73 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
                SSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD  8 kdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidv 70
                  g +v++k +p+ tv +L++  + + g+++ +k++L    +  +++ t++d++i dg  +++
  CDO68852.1 11 RLGRKVRVKCSPDDTVGDLKRLIAAQTGTDH-TKIQLKKWYTIYKDHITLADYEIHDGMSLEM 72
                45679**************************.****987777777778899999998888776 PP

>> PI3K_rbd  PI3-kinase family, ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   5.1e-06     0.015      21      66 ..       6      51 ..       2      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.1e-06
                EEECSS-SEEEEEEEETTS-HHHHHHHHHHCHH----------GEE CS
    PI3K_rbd 21 svllenkqqkvtlkvnpnstpesllaealrkklsvldqedvtddyv 66
                ++ +++   kv++k++p++t+++l+  + +++ +++++ + +++y+
  CDO68852.1  6 VIANDRLGRKVRVKCSPDDTVGDLKRLIAAQTGTDHTKIQLKKWYT 51
                4556678899*******************99999999999998996 PP

>> RAWUL  RAWUL domain RING finger- and  WD40-associated ubiquitin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.0   5.2e-06     0.015       3      55 ..      18      71 ..      17      73 .] 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.2e-06
                EEEETTSBHHHHHHHHHHHHHHHHHCH..GGGEEEEEEE..TTSEEE--TTCBHH CS
       RAWUL  3 lkctanatVdhLsKyLalrlaleekqe..ekqytiyiveilyegeftLngsltLe 55
                +kc+   tV  L++++a + + ++++   +k ytiy+  i+ ++   +++ ++Le
  CDO68852.1 18 VKCSPDDTVGDLKRLIAAQTGTDHTKIqlKKWYTIYKDHITLADYE-IHDGMSLE 71
                79********************9997677999*****998887766.77777776 PP

>> DUF4431  Domain of unknown function (DUF4431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.015        44      17      27 ..      11      21 ..       5      21 .. 0.84
   2 ?    7.4   0.0    0.0012       3.7      28      42 ..      32      46 ..      31      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.015
     DUF4431 17 llGKeVkVtGk 27
                 lG++V+V+++
  CDO68852.1 11 RLGRKVRVKCS 21
                69******985 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
     DUF4431 28 LfhaqtghHhTpvlL 42
                L +aqtg +hT ++L
  CDO68852.1 32 LIAAQTGTDHTKIQL 46
                779*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 542.74
//
Query:       CDO68853.1  [L=391]
Description: hypothetical protein BN946_scf185035.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-29  103.4   1.8    4.9e-28   98.4   1.8    2.2  1  Amidohydro_1     Amidohydrolase family
    1.2e-07   31.6   1.5    0.00041   19.9   0.0    2.6  3  Amidohydro_3     Amidohydrolase family
  ------ inclusion threshold ------
        0.3   11.2   1.2        3.4    7.7   0.0    2.8  3  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   1.8   8.3e-32   4.9e-28       1     338 [.      94     372 ..      94     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 8.3e-32
                   EEEE-EEEEEEECETTECSSSGHHHHH.STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSHHH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwl.vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldrgsaetska 96 
                   +++PGlID HvH+   +++++ + +++ +p+e +   +  +++++l+ G+ttv+d+g     + +al+ a++e   g                + ka
    CDO68853.1  94 FLCPGLIDCHVHVTAVPGVNT-MAELVqTPEELVHLRTTYVLREMLMRGFTTVRDTGG----ASKALATAISE---G-------------L-IVLKA 168
                   689**********87777665.666667******************************....9**********...3.............2.35689 PP

                   HHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHH.TTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEE CS
  Amidohydro_1  97 sreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkr.dlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklil 192
                   +re+lk g a++ik++ +g+v + ++  e ++f++eel ++   +k++ +++ ++Ha  +     +a++ ++++iehg + ++       +++kl++
    CDO68853.1 169 VREELKGG-ADFIKVMCGGGVASPTDAIETVQFTAEELCAITTTCKQMgGKHTTAHAYTDASVL-HAIENGVRGIEHGNLISR-------ETAKLMA 256
                   *****999.8***********************************************7766665.9*****************.......999**** PP

                   HCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHH..HHHHHHHHHHCCTTTTHCHCHHHHHHH CS
  Amidohydro_1 193 ahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnllee..lrlalklqrgllyedeegglslkealr 287
                   ++g++ltpt    l+ +  +++v  +pf++    +g  + ++++ +      g D   + + +   +e  + + +              ls  ++lr
    CDO68853.1 257 ERGIFLTPT----LACY--GIMVR-LPFEDFLPPEGKVKNKQVMAR------GLD---ALKIA---DEagVTICY-----------S-VLSSVKVLR 322
                   *********....6666..88888.667666666666666666666......666...22222...332133333...........3.3******** PP

                   HHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEE CS
  Amidohydro_1 288 maTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvi 338
                    aT+n+A  lg d ++Gs+ vG  AD+ v+d ++l++++ l  + +    +
    CDO68853.1 323 HATTNAALMLG-DPRLGSLSVGSCADILVLDANPLEDVTVLDYPEKHLFAV 372
                   ***********.67******************9988888776655554444 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   6.9e-05      0.41       6      24 ..      91     109 ..      88     126 .. 0.82
   2 ?   -3.0   0.0      0.64   3.8e+03     299     330 ..     232     260 ..     216     264 .. 0.68
   3 !   19.9   0.0   6.9e-08   0.00041     412     472 ..     319     379 ..     298     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.9e-05
  Amidohydro_3   6 kGrlvlPGFvDsHtHlagg 24 
                   +G+++ PG++D H H++++
    CDO68853.1  91 SGKFLCPGLIDCHVHVTAV 109
                   69*************8875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.64
  Amidohydro_3 299 aaekngnqdrrrlehaegvtesqiervaalqv 330
                   +a +ng++   ++eh+  ++ ++++ +a+ ++
    CDO68853.1 232 HAIENGVR---GIEHGNLISRETAKLMAERGI 260
                   34555555...799999998888888888765 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 6.9e-08
  Amidohydro_3 412 ealalyTrgpAkalgledrkGtLevGadADlvvldadpl.dvdppelaearvrltvvdGrvv 472
                   ++l++ T+++A +lg +   G+L vG  AD+ vlda+pl dv+  +  e+   +++ +Grvv
    CDO68853.1 319 KVLRHATTNAALMLGDPRL-GSLSVGSCADILVLDANPLeDVTVLDYPEKHLFAVIQGGRVV 379
                   7899**************7.***************888624555544455577777777776 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.49   2.9e+03      21      30 ..       2      11 ..       1      12 [. 0.85
   2 ?    7.7   0.0   0.00058       3.4       6      26 ..      50      71 ..      50      73 .. 0.87
   3 ?    0.8   0.0     0.083   4.9e+02      10      21 ..     371     382 ..     369     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.49
  Molybdopterin_N 21 rPfegDpdPs 30
                     +Pf+g pd +
       CDO68853.1  2 TPFPGSPDKT 11
                     8******976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00058
  Molybdopterin_N  6 GafraevkdGkivgvrPfeg.D 26
                     G f ++ +dG iv+ +P ++ D
       CDO68853.1 50 GRFDVTMDDGVIVELQPTAErD 71
                     5699*************88755 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.083
  Molybdopterin_N  10 aevkdGkivgvr 21 
                      a++++G++v++r
       CDO68853.1 371 AVIQGGRVVSSR 382
                      889******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2453.39
//
Query:       CDO68854.1  [L=663]
Description: hypothetical protein BN946_scf185035.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.6e-264  877.5  15.2   4.1e-264  877.3  15.2    1.0  1  HSP70          Hsp70 protein
    2.7e-14   52.7  11.0    1.6e-13   50.2   1.9    3.2  3  MreB_Mbl       MreB/Mbl protein
     0.0013   18.5   0.0     0.0031   17.3   0.0    1.7  1  FGGY_C         FGGY family of carbohydrate kinases, C-termina
     0.0015   18.9   6.7       0.31   11.5   0.2    3.9  3  FtsA           Cell division protein FtsA
  ------ inclusion threshold ------
      0.019   14.8   0.4       0.12   12.2   0.1    2.2  2  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
       0.13   11.4   1.0        3.7    6.7   0.8    2.2  2  GLE1           GLE1-like protein
        5.2    7.3   9.5        1.5    9.0   5.8    2.1  2  SMBP           Small metal-binding protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  877.3  15.2  1.6e-267  4.1e-264       1     598 [.      38     643 ..      38     644 .. 0.98

  Alignments for each domain:
  == domain 1  score: 877.3 bits;  conditional E-value: 1.6e-267
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 v+GiDLGttns+vavmeg++++vi+n+eg+rttPsvvaFtk+ erlvG +Akrqav+n++ntvf++KrliGrkfsdpev++++k++p+k+v k++g++ 
  CDO68854.1  38 VVGIDLGTTNSCVAVMEGKTAKVIENAEGARTTPSVVAFTKHgERLVGLPAKRQAVVNSANTVFAFKRLIGRKFSDPEVKEDMKHWPFKIVPKPDGRPA 136
                 79************************************************************************************************* PP

                 EEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXS CS
       HSP70  99 veveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGg 195
                 veve  g+  +f++e++s+mvL+k++etae+ylgkkv++av+tvPaYfndaqRqatkdAg+iAGL+vlR++NepTAaalaYGld++d +++++vyDlGg
  CDO68854.1 137 VEVENGGKkqQFSAEELSSMVLAKMRETAEQYLGKKVNHAVVTVPAYFNDAQRQATKDAGTIAGLDVLRVINEPTAAALAYGLDRAD-NSVIAVYDLGG 234
                 ******9999*****************************************************************************.*********** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlsekl 293
                 gtfd+Sile++kGvfevk+T+gDthlGGedfD++lv+h+++efkk++g+ l++d  alqr++eaaekaK eLSs++qteinl+++t+d++g k+++ k+
  CDO68854.1 235 GTFDISILEMQKGVFEVKSTNGDTHLGGEDFDNVLVQHILNEFKKETGLSLTEDAVALQRIREAAEKAKVELSSTTQTEINLPFITADASGpKHINLKV 333
                 *************************************************************************************************** PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpL 392
                  R++fe+l+++l++rt+ep++kal+da++k++e++ev+lvGG+tR+P+v e+vk++fg+epsk+vnpDeavaiGAA+q+gvl+g  +v+d+lllDvtpL
  CDO68854.1 334 LRSQFESLTANLIQRTIEPCKKALADAGVKASEVNEVILVGGMTRMPRVVETVKSVFGREPSKGVNPDEAVAIGAAIQGGVLAG--NVTDILLLDVTPL 430
                 ************************************************************************************..************* PP

                 -EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCE CS
       HSP70 393 slgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgke 491
                 slgietlgg+mtkli+rnttiptkk+q+fstaad+qta+e++++qgerelv+dnkllg+f+l gippap+Gvpqi++tfdida+Gi++v+akdk+tgk+
  CDO68854.1 431 SLGIETLGGIMTKLIPRNTTIPTKKTQTFSTAADGQTAIEVKIYQGERELVRDNKLLGNFNLVGIPPAPKGVPQIDITFDIDADGIVHVTAKDKATGKD 529
                 *************************************************************************************************** PP

                 EEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSC.......HHHHHHHH CS
       HSP70 492 eeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeee.......keeieakt 583
                 +++ti++s+gls+++ie+mv++ae++ae+dk++k+ ie+ n+a++++ ++ek+++e ++++++ ekekve+ i+eL+e + + +       +e+i++k+
  CDO68854.1 530 QSMTIASSSGLSDKDIERMVEEAEQYAETDKQRKALIEEANKADSVCSDTEKAINEFKDQIDATEKEKVEKLIAELRELAVKGQagdasvdAEKIREKI 628
                 ****************************************************************************99874444355667788999999 PP

                 HHHHHHHHHHHHHHH CS
       HSP70 584 eelkkvvekiaekly 598
                 +e ++++  +++k+y
  CDO68854.1 629 NETQQASLGLFQKVY 643
                 999999888888877 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0019       4.8       4      42 ..      39      86 ..      37     121 .. 0.68
   2 !   50.2   1.9   6.4e-17   1.6e-13      85     316 ..     165     409 ..     145     415 .. 0.73
   3 ?    0.9   0.5     0.061   1.6e+02     203     269 ..     585     651 ..     575     657 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0019
                EEEEE-SSEEEEEE.TTTE.EEEEE.......ES-EEEETTT--EEEE CS
    MreB_Mbl  4 lgiDLGtantlvyv.kgkg.ivlne.......psvvAikkktkkvlav 42
                +giDLGt+n  v v +gk   v+++       psvvA++k+ ++++ +
  CDO68854.1 39 VGIDLGTTNSCVAVmEGKTaKVIENaegarttPSVVAFTKHGERLVGL 86
                79*******999552555413433223333338999998887776544 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 6.4e-17
                 HHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETT.EEEEEEE....ES-SHH CS
    MreB_Mbl  85 vkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislg.givtsks....vrvaGd 178
                 +++    + ++ v++vP   ++ +r+A k+a + aG +   +i+ep aAA+  gl+ ++ s   v d+Gggt +++++ ++ g+ + ks     +++G+
  CDO68854.1 165 AEQYLGKKVNHAVVTVPAYFNDAQRQATKDAGTIAGLDVLRVINEPTAAALAYGLDRADNSVIAVYDLGGGTFDISILEMQkGVFEVKStngdTHLGGE 263
                 333333466789******************************************************************997366666662233579*** PP

                 HHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTT.TCEEEE..EEEHHHHH.HHHHHHHHHHH.HHHHHHHHTS-HHHHHHH CS
    MreB_Mbl 179 eldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrdlvt.glpkev..evsseevr.ealkepvsaiv.eavkevLektppeLaadi 272
                 ++d+ ++++i ++++   G + +e+  +++  + + +e+ k+e++ +  ++ +lp  +      ++++ ++l++++++++ + +++++e ++  La   
  CDO68854.1 264 DFDNVLVQHILNEFKKETGLSLTEDA-VALQRIREAAEKAKVELSSTTQTEiNLPFITadASGPKHINlKVLRSQFESLTaNLIQRTIEPCKKALADAG 361
                 **************999998877765.344445555555555554443332144422200222344432567777776652347777777777776443 PP

                 HH....H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 273 vd....rgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 v+    + ++l+GG + +  + +++++ +g + + + +p ++va G++
  CDO68854.1 362 VKasevNEVILVGGMTRMPRVVETVKSVFGREPSKGVNPDEAVAIGAA 409
                 321223679999********************************9986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.061
                 HHHHHH-BSS--HHHHEEEEEEEE.TTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH CS
    MreB_Mbl 203 kikieigsavkeeeeekmeikGrd.lvtglpkevevsseevrealkepvsaiveavkevLektppeLa 269
                 + k +i ++ ke+ e+ +  + r+  v+g +  ++v++e++re ++e+ +a +   ++v ek  +e +
  CDO68854.1 585 EFKDQIDATEKEKVEK-LIAELRElAVKGQAGDASVDAEKIREKINETQQASLGLFQKVYEKRNAEAS 651
                 5566665555544444.444444415899*******************99999999999999888865 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06    0.0031     124     196 ..     334     414 ..     269     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
      FGGY_C 124 arAaleavalqlrailealekd.......sgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                  r+++e++   l +++ +  k+       + +++++++++GG+++ + ++++  +++g  p + + ++ea+a+GaAi ++v
  CDO68854.1 334 LRSQFESLTANLIQRTIEPCKKaladagvKASEVNEVILVGGMTRMPRVVETVKSVFGrEPSKGVNPDEAVAIGAAIQGGV 414
                 556666666555555544433356665556667*************************989899999***********997 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0034       8.7       1      19 [.      39      57 ..      39      83 .. 0.84
   2 !   11.5   0.2   0.00012      0.31       2     101 ..     229     405 ..     228     409 .. 0.67
   3 ?    1.4   0.5      0.17   4.3e+02      34      61 ..     542     583 ..     515     654 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0034
                EEEEE-SSSEEEEEEETTE CS
                xxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedga 19
                +++D+G++ ++vav+e++ 
  CDO68854.1 39 VGIDLGTTNSCVAVMEGKT 57
                68**************954 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00012
                 EEEE-SSSEEEEEEETTEEEE..........EEEES--HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--........... CS
                 xxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx........... RF
        FtsA   2 lvDiGagktdvavaedgalvh..........lrvigvggngitkd...................iakalrtaveeAerikikyGsala........... 60 
                 + D+G+g+ d++++e+++ v+          l     gg+ +++                     a al+   e+Ae+ k++  s  +           
  CDO68854.1 229 VYDLGGGTFDISILEMQKGVFevkstngdthL-----GGEDFDNVlvqhilnefkketglslteDAVALQRIREAAEKAKVELSSTTQteinlpfitad 322
                 669************97644454444444440.....44444444444444444444444444434488999999999997777766666777777766 PP

                 ...EEEEEHHHHH.......................................GGGGSTTHHHHHHHHH..T-..HHHT-GGGHHH CS
                 ...xxxxxxxxxx.......................................xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
        FtsA  61 ...ekeigrkels.......................................ggsalpnleelaeral..spkleevsdpeyasa 101
                    +k+i+ k l                                        g + +p ++e +++++  +p  ++  +p  a+a
  CDO68854.1 323 asgPKHINLKVLRsqfesltanliqrtiepckkaladagvkasevnevilvgGMTRMPRVVETVKSVFgrEP--SKGVNPDEAVA 405
                 666444444333377788888888888889999999999999999999999999**********99996644..22344444554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.17
                 HHHHHHHHT--HHHHHHHHHHH--S--..............E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..............x RF
        FtsA  34 tkdiakalrtaveeAerikikyGsala..............e 61 
                 +kdi++++ +a + Ae  k + +   +               
  CDO68854.1 542 DKDIERMVEEAEQYAETDKQRKALIEEankadsvcsdtekaI 583
                 567999999999999998854444333444444444443330 PP

>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.36   9.3e+02      14      46 ..     152     184 ..     148     187 .. 0.83
   2 ?   12.2   0.1   4.7e-05      0.12      13      76 ..     343     414 ..     329     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.36
                    HHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCC CS
  DMRL_synthase  14 eitdkllegaldelkeagvaeenidvvtVPGaf 46 
                    e+ + +l++++++++++  ++ n  vvtVP  f
     CDO68854.1 152 ELSSMVLAKMRETAEQYLGKKVNHAVVTVPAYF 184
                    5667788889999999888889********876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.7e-05
                    HHHHHHHHHHHHHHHHHCTTS.SCCEEEEEESSCCCHHHHHHHHCT......STT-..SEEEEEEEEE--SS CS
  DMRL_synthase  13 eeitdkllegaldelkeagva.eenidvvtVPGafElplaakklae......ssky.ldavialGvvirGet 76 
                    ++++++ +e ++++l++agv+ +e  +v+ V G   +p +++++ +      s++   d  +a+G+ i+G+ 
     CDO68854.1 343 ANLIQRTIEPCKKALADAGVKaSEVNEVILVGGMTRMPRVVETVKSvfgrepSKGVnPDEAVAIGAAIQGGV 414
                    5688999999*********994567789**************9888665554355458***********985 PP

>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.029        73     106     146 ..     155     195 ..     147     203 .. 0.86
   2 ?    6.7   0.8    0.0015       3.7      13      61 ..     565     614 ..     553     641 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.029
        GLE1 106 vgllsehpelgdlllArlvkkCpylvpfypakkegqsteey 146
                   +l+++ e ++  l++ v + +++vp y+++ + q t++ 
  CDO68854.1 155 SMVLAKMRETAEQYLGKKVNHAVVTVPAYFNDAQRQATKDA 195
                 6788999999********************99999988765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
        GLE1  13 qvkedkelkkllgdlkrkInpkvgQltnss.eqlkkitkelkellesgkp 61 
                  ++e  ++ + ++d +++In    Q+ +++ e+++k+++el+el  +g+ 
  CDO68854.1 565 LIEEANKADSVCSDTEKAINEFKDQIDATEkEKVEKLIAELRELAVKGQA 614
                 34466778899*******************9*************965554 PP

>> SMBP  Small metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.6   1.2e+04      30      42 ..     291     303 ..     284     311 .. 0.55
   2 ?    9.0   5.8    0.0006       1.5      30     110 ..     558     633 ..     531     634 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.6
                 HHHHHHHHHHHHH CS
        SMBP  30 AiehaeaAvahgk 42 
                 A++  ++A++++k
  CDO68854.1 291 ALQRIREAAEKAK 303
                 4444444444443 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH...-------HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH CS
        SMBP  30 AiehaeaAvahgkaghakalveHaeealkhakaaaekakeeekehldegikhLeeAIkhgkaghadvAtkaaeeAlkhlka 110
                 + ++ +a +++++  +a+ +   +e+a+++ k+     +++eke++++ i +L+e   +g+ag+a+v ++ ++e +++ ++
  CDO68854.1 558 TDKQRKALIEEAN--KADSVCSDTEKAINEFKDQ---IDATEKEKVEKLIAELRELAVKGQAGDASVDAEKIREKINETQQ 633
                 3334444444444..4777777777777777777...999***************999************99998887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1891  (0.105472); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 3955.20
//
Query:       CDO68855.1  [L=1516]
Description: hypothetical protein BN946_scf185035.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-56  191.5   0.1    1.4e-56  191.5   0.1    1.8  2  MIF4G     MIF4G domain
    2.3e-20   72.5   0.0    6.6e-20   71.1   0.0    1.8  1  eIF_4G1   Eukaryotic translation initiation factor 4G1
    2.5e-10   40.4   0.5    6.5e-10   39.0   0.2    1.9  2  MA3       MA3 domain


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.2   8.6         3   1.8e+04      87     104 ..     542     561 ..     525     570 .. 0.53
   2 !  191.5   0.1   2.3e-60   1.4e-56       2     212 .]     928    1182 ..     927    1182 .. 0.99

  Alignments for each domain:
  == domain 1  score: -11.2 bits;  conditional E-value: 3
                 C..-S-HHHHHHHHHHHHHH CS
       MIF4G  87 y..eleneleenedgnrrrr 104
                    e+e + +e+e+++++r+
  CDO68855.1 542 RqeEEERKRQEEEEQEKERQ 561
                 13433333333333333333 PP

  == domain 2  score: 191.5 bits;  conditional E-value: 2.3e-60
                  HHHHHHHHCHTTTTHHHHHHHHHHHHHCS....CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSH...................HHHHHHH CS
       MIF4G    2 kkvkgilnklskenfevlikqllklamdd....dknelkevielifekaveepsfsplyarlcgklnsrfq...................qnFrikl 75  
                  +kv+ +lnkl+ e f+++ +q++  a+++    d+++l +vi+l+feka++e ++s +yarlc+k++ +++                   q Fr++l
  CDO68855.1  928 RKVRALLNKLTMERFDSISDQIIAWANKSekeqDGRTLIQVIRLVFEKATDEATWSEMYARLCRKMMEQISpnvrddgiknaegkpiaggQLFRKYL 1024
                  89*********************************************************************************************** PP

                  HHHHHHHHHHHC................................-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCC CS
       MIF4G   76 lnklqeefekry................................eleneleenedgnrrrrlglvrflgelfklkmltskilldclkellssltket 140 
                  ln++qe+fe+ +                                 l +e+++++++++r+ lgl++f+gelfkl+mlt++i+++c+k+ll ++    
  CDO68855.1 1025 LNRCQEDFERGWvakeataaaaaakatedqaakaaaeqsqdgeaALYSEEYYAAQKAKRQGLGLIKFIGELFKLQMLTERIMHECIKKLLGNVES-- 1119
                  ***********************************************************************************************.. PP

                  SCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHHHHHHHHHHHHHHTT CS
       MIF4G  141 addppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqelssrirfmlkdlielkknk 212 
                       +++eeie l++lltt+g +l+ ++ka+  +d +f+r+    ++   +++ sr++fml d+iel++ k
  CDO68855.1 1120 -----PEEEEIESLCKLLTTVGALLD-TPKARGHMDVYFSRMKELTKS---PNVNSRMQFMLLDVIELRERK 1182
                  .....789******************.*********************...9*****************876 PP

>> eIF_4G1  Eukaryotic translation initiation factor 4G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.1e-23   6.6e-20      10      70 .]     676     738 ..     670     738 .. 0.92

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.1e-23
     eIF_4G1  10 ptisaflesLksArpiediysvkYPegiesPdpalnkeakk..yrYdpdFLLQFkdvvkekpd 70 
                   ++ + ++L++Ar iedi++++YPegi sP+p+ln +ak+  +rYd+dFLLQF+  +kekpd
  CDO68855.1 676 NIPQPLPSALATARIIEDISTIEYPEGIMSPKPELNVNAKQgkFRYDRDFLLQFMAICKEKPD 738
                 556778899****************************999999*******************8 PP

>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.78   4.6e+03      37      65 ..     968     995 ..     959     998 .. 0.69
   2 !   39.0   0.2   1.1e-13   6.5e-10      10     106 ..    1393    1488 ..    1384    1492 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHS.SS--HHHHHHHHHHHC CS
         MA3  37 ivkillecaleesktyneyygllleklce 65 
                 +++ + e a +e +t +e+y+ l  k++e
  CDO68855.1 968 VIRLVFEKATDE-ATWSEMYARLCRKMME 995
                 444455555566.8888888888888886 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 1.1e-13
                  HSSS...SHHHHHHHHHHTT--.TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH...HHHHHHHHHHH CS
         MA3   10 eeylssgdyeeavsklekLklp.kqeheivkillecaleesktyneyygllleklceknlilkkqfekgfwdvlesledleldipeairnlaefvar 105 
                  +e++s++d++ea   + k  lp + +h +v++l++ a e+++   +  + l+e+ ++knl + ++fe+gf  + e ++d+++d p+a++ +a ++ +
  CDO68855.1 1393 KEFFSIRDLDEAEVYFTK--LPaEHRHLLVDKLVTRAVESKEADAQLVADLFERAHSKNLCSPATFEQGFLPTAEIIDDIAIDAPKALNLFALMMKS 1487
                  799*********999999..77789******************************************************************999887 PP

                  H CS
         MA3  106 l 106 
                  +
  CDO68855.1 1488 A 1488
                  6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2941  (0.164036); expected 358.6 (0.02)
Passed bias filter:                      898  (0.0500865); expected 358.6 (0.02)
Passed Vit filter:                       567  (0.0316247); expected 17.9 (0.001)
Passed Fwd filter:                       185  (0.0103185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.44u 0.45s 00:00:03.89 Elapsed: 00:00:00.79
# Mc/sec: 5766.01
//
Query:       CDO68856.1  [L=130]
Description: hypothetical protein BN946_scf185035.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 944.32
//
Query:       CDO68857.1  [L=797]
Description: hypothetical protein BN946_scf185035.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-53  180.9   0.0    2.4e-51  174.8   0.0    2.9  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
       0.61    8.1  17.3       0.85    7.6  17.3    1.1  1  AF-4            AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   2.7e-55   2.4e-51      35     407 ..     169     555 ..     122     556 .. 0.80
   2 ?   -3.0   0.5      0.26   2.4e+03     262     292 ..     697     737 ..     662     776 .. 0.57

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 2.7e-55
  Pkinase_fungal  35 eeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptivte.sdgrrsy 128
                     +++ ++al q+a+ya +vf+ q+   ++  +++ gs +rl + DRsGv+ s +++ +++p k+ r++ +++ ++ +  G D t + +   g+ +y
      CDO68857.1 169 ADSKRDALGQIATYASSVFEYQQLT-HHFSVVILGSWARLARWDRSGVIFSSKFNYKQEPAKLARFFWRVAHASAEVRGHDHTAT-RvLPGSVDY 261
                     346678999***********99886.55899***************************************************995.556777777 PP

  Pkinase_fungal 129 ei...................................kaeeeketekleleeplarqraivgRgTtcwrarkegergkeyv.vKdsWr.daerk. 185
                     e+                                     ++++  + + + +p +  + +vgRgT+ + a   ++ ++ +v +Kd+Wr   er+ 
      CDO68857.1 262 ELlqawkakgktlsdsdyvakrfikslsgdrpwwrltVSDKTHGARDFLVGRPTFAAAGVVGRGTRGYIALSISDPSMPFVyLKDCWRmVHERSk 356
                     777888888888888888899999************644445556667777*******************9988886666648*****4345556 PP

  Pkinase_fungal 186 sEaelLkkaeergvegvarlvahedveekdddiaeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstskrs 280
                      E+++L   +e+ v ++ + + h dve+          +++v++   f +                a + ++++ ++++v     +++++++++ 
      CDO68857.1 357 LEGDILSYLNEKRVANIPTALYHGDVEG----------QVTVSQT--FWK----------------APGGNTAHDTNENVDDGGRKTETEKKNTC 423
                     8*************************82..........2222222..222................22333334444444444444444555566 PP

  Pkinase_fungal 281 rlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitds.kke..gerkglLiDLDlakelsddssesgar 372
                     rl++  h rlv+++vG+p++++ + k l+++++DaIk+h+  ++ka+++HrDiS++Nil+  +  k+   + +glL+D +l k+ sd++++  + 
      CDO68857.1 424 RLKTHQHYRLVVREVGVPLQEFPTGKVLIQVIADAIKAHKDAYKKAEVMHRDISVGNILMIPHvGKKgrTKYRGLLADWELSKQRSDEDMDPRHP 518
                     78899******************************************************9966533345899***************9999999* PP

  Pkinase_fungal 373 ertGTleFmaievlkgee..HsyrhDLESffyvllwi 407
                     +rtGT +Fm++  l++ e   ++ + LESf+ v+++ 
      CDO68857.1 519 DRTGTWQFMSVHALSEPEaqIQIADELESFLHVMIYC 555
                     ***************844569999**********996 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.26
  Pkinase_fungal 262 skkvekrsvdssv.stskrsr.........lenrvhrrlvi 292
                     s++ e+++ d+s+  +s+ ++           +r +r l+i
      CDO68857.1 697 SSDSEQSHEDNSIvDESQSQKelklfakkiQSHRHMRTLLI 737
                     22222222222222222222123444444444566665555 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  17.3   9.4e-05      0.85     467     599 ..     666     789 ..     651     796 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 9.4e-05
        AF-4 467 sssaeSeSsSeSeSSSeSDSesEssssdseanepprtatpepeppatnkWqLdnwlnkvnqlassqeessaessseteesespkkeskeqsqgksksss 565
                 s  ++ +SsS S+SS   DS+s +s  ds++   + ++++  + +  ++ q ++ l+   + ++s+ +++   +  +++  ++ ke+  ++   s + +
  CDO68857.1 666 SGHEKAGSSSVSDSS--PDSDSSDSNPDSDCDPSSDSEQSHEDNSIVDESQSQKELKLFAKKIQSHRHMR---TLLINAL-KR-KEAAWPT---SGDRQ 754
                 45567899*******..99999999**************9999999***********4444444444433...2222222.12.2222222...23333 PP

        AF-4 566 sevveesseskpkakskaeqkkseek.qdkrskqk 599
                 ++  ++  +++++ak++++++++e + qd+rs ++
  CDO68857.1 755 RDQLDPAFNPHKQAKTREKRTAPEPEpQDQRSSKR 789
                 45566677888888999999999877666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5071.38
//
Query:       CDO68858.1  [L=311]
Description: hypothetical protein BN946_scf185035.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-12   45.1   0.0    7.2e-12   44.8   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0     4e-16   7.2e-12      12     131 ..     132     253 ..     120     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4e-16
  Pkinase_fungal  12 kveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglll 106
                     +v++k +dw +v v +e k+++          q+a+ya +vf+ q+   ++  +++ gs +rl + DRsGv+ s +++ +++p k+ r++ +++ 
      CDO68858.1 132 AVKDKRTDWAEVEVFIECKRDAL--------GQIATYASSVFEYQQLT-HHFSVVILGSWARLARWDRSGVIFSSKFNYKQEPAKLARFFWRVAH 217
                     578999************99855........5***********99886.55899***************************************** PP

  Pkinase_fungal 107 mdddeLGlDptivte.sdgrrsyei...........k 131
                     ++ +  G + t  t+   g+ +ye+           +
      CDO68858.1 218 ASAEVRGHEHTA-TRiLPGSADYELlqawkakelgkE 253
                     *********999.565777888887665544444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2226.33
//
Query:       CDO68859.1  [L=163]
Description: hypothetical protein BN946_scf185000.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.009   15.7   0.1       0.47   10.3   0.0    2.3  2  SAP       SAP domain


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   2.6e-05      0.47      17      32 ..      41      56 ..      34      59 .. 0.84
   2 !    3.2   0.2    0.0042        76       3      15 ..      73      85 ..      72      97 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.6e-05
                T--TTS-HHHHHHHHH CS
         SAP 17 GLptsGkKaeLieRLk 32
                GLpt G ++ Li R+ 
  CDO68859.1 41 GLPTHGDRNALIRRHS 56
                9*************95 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0042
                T--HHHHHHHHHH CS
         SAP  3 kltVaeLKeeLkk 15
                 +t + L+ eL+k
  CDO68859.1 73 RWTLDRLRTELRK 85
                79*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1120.76
//
Query:       CDO68860.1  [L=357]
Description: hypothetical protein BN946_scf185000.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-25   90.1   0.0      3e-25   89.7   0.0    1.2  1  DUF3632   Protein of unknown function (DUF3632)


Domain annotation for each model (and alignments):
>> DUF3632  Protein of unknown function (DUF3632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   1.7e-29     3e-25       1     173 [.      78     315 ..      78     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 1.7e-29
     DUF3632   1 WelllevAkqipaaqdkLvellkalrk..deeeegaktedgerlWsdlpllgaalre.......................................... 55 
                 W+ l+ +A   p+ +d+L  +l+a+    +  +eg + ++++  W +lp +++alre                                          
  CDO68860.1  78 WYRLIVIADDDPSMHDRLGYILAAIMVkgKDGREGWRIWGNDFDWANLPIFWPALREcmnglliflfkfipdlltvtlasagpsvvddngkhlyqpyps 176
                 999**********************99775466677777777778****************************************************** PP

     DUF3632  56 ...........edeadskereeekeewinlnaFlArltaagvlkdslyalwalreaLE....seeeeeeaekeekldadlaaAaqWillageeLyelse 139
                            +d+a+s ++++e+++w+n naF+Arl+  gv + + y++ ++r  LE    s  +++ +e+  +++ d++  a++i++ag+++ye+ +
  CDO68860.1 177 dvevalsgdppTDSARSRRAAQERTAWLNRNAFVARLWVLGVADMAFYGISTMRMELEpyslSLDRRTLSESYGTKELDIENSATYIRIAGKQMYECRD 275
                 *********9988888899999999****************996699***************4445566677788899********************* PP

     DUF3632 140 eekdkdekdeegnagapgpl......wkgfskeRWafWke 173
                   ++k++  ++ nagapg++       +g+ +eRWa+Wk+
  CDO68860.1 276 ILGPKGNPGWPSNAGAPGSSggawdgVDGYHPERWALWKA 315
                 ***********************9999999********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2535.29
//
Query:       CDO68861.1  [L=377]
Description: hypothetical protein BN946_scf185000.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00079   19.4   4.1       0.29   11.2   0.1    3.6  2  Cu_bind_like  Plastocyanin-like domain
      0.008   16.6   6.7        3.8    8.0   0.2    3.8  3  Copper-bind   Copper binding proteins, plastocyanin/azurin fa
  ------ inclusion threshold ------
      0.021   14.9   0.4       0.43   10.7   0.1    2.7  2  Cupredoxin_1  Cupredoxin-like domain


Domain annotation for each model (and alignments):
>> Cu_bind_like  Plastocyanin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   1.0    0.0019        11      21      40 ..      46      65 ..      42     118 .. 0.64
   2 !   11.2   0.1   4.8e-05      0.29      17      84 .]     220     305 ..     207     305 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0019
  Cu_bind_like 21 GDtLlFkydsevhsvvevsk 40
                  GD ++F ++++ h+v++ s 
    CDO68861.1 46 GDQVIFVFKQKNHTVTQSSL 65
                  9**************99763 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.8e-05
  Cu_bind_like  17 tFrvGDtLlFkydsevhsvvevskkeyekCetskpleeft.................tgsdkvtLtkegsnyFisgvp...ghCkkGq 84 
                   t +vGDtL+F++ ++ h+ ++ ++++   C+  +++++                     + +v+++ ++  + +++++   +hC++G+
    CDO68861.1 220 TAQVGDTLTFRFAAKNHTATQSTFAS--PCSPLSQTSTSGqvgfdsgfmpvvanssdFPNFTVKINDTAPIWVFCKQTnpaSHCAAGM 305
                   679************99988877664..566555444444456667777777766665666777777777777776655566777665 PP

>> Copper-bind  Copper binding proteins, plastocyanin/azurin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0014       8.2       9      94 ..      31     120 ..      22     123 .. 0.79
   2 ?    3.4   1.5     0.018   1.1e+02      19      76 ..     120     179 ..     110     193 .. 0.70
   3 !    8.0   0.2   0.00063       3.8       4      38 ..     204     237 ..     201     310 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
                  TETSEEESSEEEEETTEEEEEEEESSSSBEEEEET.....TSSTTTGGGTTSCTTCEEEEBSTTEEEEEEEESSEEEEEEET.T.TTTTTSEE CS
  Copper-bind   9 sgdlqFetkeitvkkgekvtfvnlavmgHNvvldk.....dgvpagvdkdkvkaedetkliggGekdsvtfdeagtYkffCs.P.HaaagMkg 94 
                   g l+F++ +++  +g++v fv  +++ H v  ++       ++ g+d+  v     +++++     ++t+++++   ++C    H  +gM+ 
   CDO68861.1  31 VGILKFDPPSVDAFPGDQVIFVF-KQKNHTVTQSSlnspcTPLEGGFDSGFVPVA--DNVTTDFPIAQLTVQDTNPVWVYCRqAnHCQQGMVF 120
                  3459******************9.8999999988888888777778999999885..777888888888888888888888865688888875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
                  EEEETTEEEEEEEESSSSBEEEEETTSSTTTGGGTTSCTTC.EEEEBSTTEEEEEEEE.S CS
  Copper-bind  19 itvkkgekvtfvnlavmgHNvvldkdgvpagvdkdkvkaed.etkliggGekdsvtfd.e 76 
                  + +++g+k  + + +++g N   ++ g +   d+   + +  +t       + +vt+d +
   CDO68861.1 120 FAINPGDKLSTFQSNAIGNNTDSAAAGTATTTDAVSATSTAaQTAASVVTVTATVTVDgT 179
                  6799*******************9988877777666555443444444455555555552 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00063
                  EEEETTETSEEESSEEEEETTEEEEEEEESSSSBE CS
  Copper-bind   4 klgvesgdlqFetkeitvkkgekvtfvnlavmgHN 38 
                   + +++g+l+F +++it + g++ tf   a++ H 
   CDO68861.1 204 IMVGQDGALTFTPSNITAQVGDTLTFRF-AAKNHT 237
                  56789999***************99976.556665 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.06   3.6e+02       6      58 ..       9      62 ..       4      71 .. 0.67
   2 ?   10.7   0.1   7.3e-05      0.43      18      59 ..     198     243 ..     148     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.06
  Cupredoxin_1  6 avllllsskaaaaaektveitvkdg....gfePskievkagekvklkiknkdktpee 58
                  ++l++l+++    a ++v++    g    +f+P ++++  g +v + +k+k  t+++
    CDO68861.1  9 IALFALAAPVTRGAVHNVTVG---GvgilKFDPPSVDAFPGDQVIFVFKQKNHTVTQ 62
                  445555554444444444443...1234499******************99999854 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.3e-05
  Cupredoxin_1  18 aaektveitvkdg..gfePskievkagekvklkiknkdktp..eef 59 
                   a++++v ++ +dg  +f+Ps+i+++ g  +++++ +k  t+  ++f
    CDO68861.1 198 ASQDHVIMVGQDGalTFTPSNITAQVGDTLTFRFAAKNHTAtqSTF 243
                   3333333334444778*****************9988888733444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2939.11
//
Query:       CDO68862.1  [L=515]
Description: hypothetical protein BN946_scf185000.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-13   50.8   0.0    6.3e-13   49.2   0.0    2.0  1  MUG113    Meiotically up-regulated gene 113
    4.7e-09   36.7   0.2    6.8e-08   33.0   0.0    2.8  3  T5orf172  T5orf172 domain
  ------ inclusion threshold ------
       0.23   10.2   0.0       0.31    9.8   0.0    1.1  1  AAA_32    AAA domain


Domain annotation for each model (and alignments):
>> MUG113  Meiotically up-regulated gene 113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.1e-16   6.3e-13       2      65 ..     372     454 ..     371     507 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.1e-16
      MUG113   2 KIGrTnnverRlnelnrqcpskltllryyppss...................pnahrlErllhleLkdkrlrdekcdcEwFev 65 
                 K+Gr++ +++Rl+e+ +qc+sklt l  + p s                   p +hr+Erl+hleL+d  l+ +  d ++ +v
  CDO68862.1 372 KVGRAVKLTKRLAEWDKQCQSKLTHLLGFWPMSrdaeqngmmrgrvqvgdpgPYCHRVERLVHLELADLALNAPYLDPDFPNV 454
                 *******************999998776666666**********************************999987766666555 PP

>> T5orf172  T5orf172 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.91   5.4e+03      27      55 ..     235     263 ..     231     271 .. 0.53
   2 !   33.0   0.0   1.1e-11   6.8e-08       1      73 [.     353     441 ..     353     448 .. 0.72
   3 ?   -0.6   0.0      0.32   1.9e+03      77      94 ..     470     495 ..     462     507 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.91
    T5orf172  27 qrRlkelskyptkppselevvaekevrkv 55 
                  rR ++ s+ p++ + + +++++k+vrkv
  CDO68862.1 235 PRRKRSASTPPSPISLSSSSSSKKDVRKV 263
                 56666666433333444444444555555 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 1.1e-11
    T5orf172   1 gyvYil..tnessegetillKIGrtsnvqrRlkelsk.................yptkppselevvaekev.............rkvpnahrvErlihk 67 
                 gy+Y +   + s++++ + +K+Gr+ ++++Rl+e+ k                 +                              + p +hrvErl+h+
  CDO68862.1 353 GYIYAYeiDDASNPDV-VHIKVGRAVKLTKRLAEWDKqcqsklthllgfwpmsrD---------------AeqngmmrgrvqvgDPGPYCHRVERLVHL 435
                 6777754488899999.88*****************9776655555555443331...............133445555555568889*********** PP

    T5orf172  68 eLadrr 73 
                 eLad  
  CDO68862.1 436 ELADLA 441
                 ***944 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.32
    T5orf172  77 kcdcgk.ehrEwFevs.......lee 94 
                 +c+++   h+E F ++        +e
  CDO68862.1 470 PCPDCGtVHKEIFTFPratgrykGRE 495
                 46666679999998664444444444 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.2e-05      0.31      49     106 ..     336     396 ..     331     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.2e-05
      AAA_32  49 rlleeiakkeptpdD...wcYvnnfdnpeePkalsLpaGkGkelkkdmeelveelkkeipk 106
                 ++l+++ + ++ p D   ++Y ++ d+ ++P +++++ G++ +l k+++e  ++ ++++ +
  CDO68862.1 336 TALRDKMQAKASPADepgYIYAYEIDDASNPDVVHIKVGRAVKLTKRLAEWDKQCQSKLTH 396
                 4454444555555433339******************************999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3429.85
//
Query:       CDO68863.1  [L=105]
Description: hypothetical protein BN946_scf185000.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-15   56.9   4.9    2.6e-09   37.3   2.1    2.0  2  dsDNA_bind  Double-stranded DNA-binding domain


Domain annotation for each model (and alignments):
>> dsDNA_bind  Double-stranded DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   2.1   1.5e-13   2.6e-09       5      59 ..       5      56 ..       1      57 [. 0.76
   2 !   22.2   0.1   7.5e-09   0.00013      78     103 ..      57      82 ..      55      95 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.5e-13
                XXXXXXXXXXXXXXXX...XXXX--SS..S--SSHHHHTTS--HHHHHHHHHHTT CS
  dsDNA_bind  5 rlaelqaqagsssgsggaseqqeqqqeaseeeakqaiLsqiLepeAreRLsrirl 59
                 la l+a +g+++++   ++ ++q+++++ee++++++L++iLep AreRL+ri+l
  CDO68863.1  5 DLAALRAAQGGGGNA---QGGEDQAKREAEEQMRRDMLATILEPAARERLARIAL 56
                578888888776653...333444444469***********************98 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 7.5e-09
                 --SS-----HHHHHHHHHHHS-.--XX CS
  dsDNA_bind  78 sGqlrskvteeqLkeLLeqvae.kkke 103
                 sGqlr++v+eeqL+ LL+q++  + ++
  CDO68863.1  57 SGQLRGRVSEEQLIGLLDQIDGaQ-SK 82 
                 8*******************9952.32 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 785.44
//
Query:       CDO68864.1  [L=1391]
Description: hypothetical protein BN946_scf185000.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-21   74.2  11.7    8.4e-21   73.5  11.7    1.4  1  zf-RING_4     RING/Ubox like zinc-binding domain
    5.1e-06   26.2   9.2    8.6e-06   25.5   9.2    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00033   20.4   0.0      0.001   18.9   0.0    1.9  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0053   17.1  12.7     0.0096   16.2  12.7    1.4  1  zf-RING_2     Ring finger domain
     0.0095   15.8  10.5        0.6   10.0  11.2    2.5  2  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.092   12.7   4.3       0.17   11.8   4.3    1.3  1  Baculo_IE-1   Baculovirus immediate-early protein (IE-0)
       0.38   10.6  12.8       0.72    9.7  12.8    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
       0.49   10.3  13.2       0.83    9.6  13.2    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5  11.7   3.7e-24   8.4e-21       1      47 [.      33      79 ..      33      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 3.7e-24
   zf-RING_4  1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCreeY 47
                cplC ee+d +d ++kpC+CgyqiC+fC+h+i+e+ + rCPaCr+ Y
  CDO68864.1 33 CPLCLEEMDISDLNFKPCPCGYQICQFCWHHIKENLNSRCPACRRVY 79
                9********************************************99 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   9.2   3.8e-09   8.6e-06       2      48 ..      30      80 ..      29      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.8e-09
                GSB-TTTSSS....BS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B-- CS
  zf-C3HC4_3  2 deeCviCler....prnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpie 48
                d eC++Cle+    + n+  +pCg++ +C+ C+ ++++  + +Cp Crr ++
  CDO68864.1 30 DAECPLCLEEmdisDLNFKPCPCGYQ-ICQFCWHHIKEnLNSRCPACRRVYT 80
                789******76644667888899***.*********9999********9876 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.5e-07     0.001      16      62 ..     151     200 ..     130     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.5e-07
                 HHHHHTTSCEEEEEEEEE..TTTSEEEEE.EEEESSHHHHHHHHHHHTTE CS
       RRM_1  16 kelFskfGpiksiklvrd..etgkskgfa.fVeFeskedAekAlealngk 62 
                  e+F+++G+i++i +v+     g++  ++ +++++ +edA++A++a++g 
  CDO68864.1 151 NEYFGQYGKISKIVIVKRtpPGGRAPVIGlYITYHRREDAARAIAAVDGA 200
                 489**************99999999999978****************996 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  12.7   4.3e-06    0.0096       2      44 .]      32      76 ..      31      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.3e-06
   zf-RING_2  2 eCpICleelssadsvl.llpCgHvfhreClerwlrssst.CPlCr 44
                eCp+Clee++ +d     +pCg+ +++ C  ++ ++ ++ CP+Cr
  CDO68864.1 32 ECPLCLEEMDISDLNFkPCPCGYQICQFCWHHIKENLNSrCPACR 76
                8********77666442569*********98866665658****9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.038        84      29      41 ..      29      41 ..      23      47 .. 0.74
   2 !   10.0  11.2   0.00027       0.6      14      39 ..      50      78 ..      33      85 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.038
  Prok-RING_4 29 dlssCPlCqrris 41
                 + + CPlC ++++
   CDO68864.1 29 EDAECPLCLEEMD 41
                 4558****99876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00027
  Prok-RING_4 14 epCgHlvCkeCfdskdls...sCPlCqrr 39
                  pCg  +C+ C+ + + +   +CP C+r 
   CDO68864.1 50 CPCGYQICQFCWHHIKENlnsRCPACRRV 78
                 599***********9777779******85 PP

>> Baculo_IE-1  Baculovirus immediate-early protein (IE-0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.3   7.6e-05      0.17      82     136 ..      32      84 ..      25      88 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
  Baculo_IE-1  82 qcnicedts.aeerflkPneccGykicnlcyanlwkfstvyPvcPvcktsfksssk 136
                  +c +c + +   +  +kP   cGy+ic+ c+ ++ +  ++   cP c+  + ++ +
   CDO68864.1  32 ECPLCLEEMdISDLNFKPC-PCGYQICQFCWHHIKE--NLNSRCPACRRVYTDDAV 84 
                  6888865431455566774.48********988876..6889******99988765 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  12.8   0.00032      0.72       1      40 []      32      75 ..      32      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00032
  zf-C3HC4_2  1 kCpiCldmlkdpsvvt....pCgHvfCqkCilrsLeekn.eCPlC 40
                +Cp+Cl+++    +++    pCg + Cq C++   e+ n +CP C
  CDO68864.1 32 ECPLCLEEMDIS-DLNfkpcPCGYQICQFCWHHIKENLNsRCPAC 75
                6*******9974.6666899*************7777777***** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  13.2   0.00037      0.83       1      41 []      33      75 ..      33      75 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00037
                -TTT-S--SS-E....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41
                Cp+Clee+ + +   ++ +C+ ++C+ C  +i + + +  CP C
  CDO68864.1 33 CPLCLEEMDISDlnfKPCPCGYQICQFCWHHIKE-NLNSRCPAC 75
                **********9999******************99.77888**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2575  (0.143622); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                       239  (0.0133304); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.86u 0.38s 00:00:02.24 Elapsed: 00:00:00.59
# Mc/sec: 7079.61
//
Query:       CDO68865.1  [L=240]
Description: hypothetical protein BN946_scf185000.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1618.43
//
Query:       CDO68866.1  [L=124]
Description: hypothetical protein BN946_scf185000.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 924.51
//
Query:       CDO68867.1  [L=112]
Description: hypothetical protein BN946_scf185000.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 865.44
//
Query:       CDO68868.1  [L=289]
Description: hypothetical protein BN946_scf185000.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-11   43.2   6.8      5e-11   42.5   6.8    1.3  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.032   14.5   4.7       0.06   13.7   4.7    1.4  1  zf-C6H2   zf-MYND-like zinc finger, mRNA-binding


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   6.8   5.6e-15     5e-11       9      38 .]       4      33 ..       1      33 [. 0.94

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 5.6e-15
                -SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND  9 alkkCagCksvfYCskeCqradwksHkteC 38
                +lk+CagC+ ++YCs+eCq+++w++Hk+ C
  CDO68868.1  4 KLKRCAGCSIAKYCSRECQKNAWPTHKEFC 33
                689**************************9 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.7   6.7e-06      0.06      22      43 ..      12      31 ..       3      34 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.7e-06
     zf-C6H2 22 gikesfFCsqeCFkknwkkHka 43
                +i  + +Cs+eC k++w++Hk 
  CDO68868.1 12 SI--AKYCSRECQKNAWPTHKE 31
                33..479**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2189.27
//
Query:       CDO68869.1  [L=390]
Description: hypothetical protein BN946_scf185000.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-12   47.8   0.0    3.3e-12   46.9   0.0    1.5  1  Sas10_Utp3  Sas10/Utp3/C1D family
  ------ inclusion threshold ------
       0.18   12.0   1.8       0.19   11.9   0.0    2.0  2  Med2        Mediator complex subunit 2
        0.3   12.0   7.9        1.3    9.9   0.3    2.8  3  GEN1_C      Holliday junction resolvase Gen1 C-terminal domai


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   5.5e-16   3.3e-12       1      87 []      30     131 ..      30     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 5.5e-16
  Sas10_Utp3   1 leslsksldelqeslepllskakaeekkslsdeklsegisllslKnelllaYllnlllylllklsgvelkdhp....................vvkeLv 79 
                 l++++ s++++++++++l +k++a       + ++ +gisllslK++l+l+Yl++l+l+ + ++ g +l+d                       v+ ++
  CDO68869.1  30 LDQMKVSMSATTDTIKSLREKKDATS-----ELDTRDGISLLSLKHHLMLSYLQSLTLLTARRAIGHSLQDRSlpgapfsakdrpargigagdHVDATI 123
                 689999************99643333.....366889**********************9999888444443344555666666699999999****** PP

  Sas10_Utp3  80 rlRvyleK 87 
                 + Rv+leK
  CDO68869.1 124 EARVVLEK 131
                 *******9 PP

>> Med2  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.3e-05      0.19      45      87 ..      17      59 ..       4      65 .. 0.85
   2 ?   -3.6   0.5       2.2   1.3e+04      86      95 ..     275     284 ..     255     289 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
        Med2 45 ksLkekikkFhsiLDdleiklndaksyveqlveikkekeeeke 87
                ++ +e++++F ++LD+++++++ + + +++l e+k    e+ +
  CDO68869.1 17 NVNEENVRAFCEMLDQMKVSMSATTDTIKSLREKKDATSELDT 59
                556799***************************9998887765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
        Med2  86 kekeeeerqr 95 
                  +k++e r+r
  CDO68869.1 275 VMKKKEARRR 284
                 2233333333 PP

>> GEN1_C  Holliday junction resolvase Gen1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00022       1.3       7      72 ..     124     219 ..     118     233 .. 0.60
   2 ?   -3.0   0.0       2.4   1.4e+04      50      72 ..     258     285 ..     246     291 .. 0.56
   3 ?    6.2   0.6    0.0031        18       2      70 ..     319     387 ..     318     390 .] 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00022
      GEN1_C   7 grRqhastDgllElRvevvpaqlVaidlsgeegkre.....epag.......reglaededdedeeee....................eeasakkkrk 72 
                 + R    + ++lE R +++  +lV+i+++g   +++        +         +++ede+d+d+ ++                    e++++k k++
  CDO68869.1 124 EARVVLEKVKVLEGRMKYQIDKLVRIAEEGDSADKNivndpL--AfrpnpqaLMDQDEDEEDDDDGSAhgddrngvyrppklapmpyvEPSKNKDKTR 219
                 566667777899****************99887777665430..244443333333333333333222455666666666666666654444444444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
      GEN1_C  50 laededdedeeee.....eeasakkkrk 72 
                 +++++  e+eee+     ++++++++r+
  CDO68869.1 258 RELQRMTEFEEENftrlvMKKKEARRRA 285
                 4455555666665555554444444444 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0031
      GEN1_C   2 vkaIhgrRqhastDgllElRvevvpaqlVaidlsgeegkreepagreglaededdedeeeeeeasakkk 70 
                 +k++ + R+ +  Dg +ElR     + + +   ++ +++  ++ g++g  e + + +e+e ++a++++k
  CDO68869.1 319 LKSVGRPRTGVVGDGYEELRQRGKKESVLTRSKARSRDDAFDNLGDDGPRERKRSRFEKEVKAAKKRSK 387
                 57788899*************************************************988333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2960.30
//
Query:       CDO68870.1  [L=1136]
Description: hypothetical protein BN946_scf185000.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-77  261.8   0.0      7e-76  255.8   0.0    2.1  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
    2.3e-21   77.0   0.0    3.9e-21   76.3   0.0    1.4  1  RNase_T      Exonuclease
    0.00027   20.5   0.0    0.00059   19.4   0.0    1.6  1  UCH          Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.07   13.4   0.0         39    4.7   0.0    3.9  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
       0.09   13.7   1.4         69    4.6   0.0    4.1  4  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.8   0.0     2e-79     7e-76       1     320 []     478     772 ..     478     772 .. 0.91

  Alignments for each domain:
  == domain 1  score: 255.8 bits;  conditional E-value: 2e-79
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipea.salglileeeeetekssaisl 98 
                 sGLE+hi nsY+N+l+Qv++++ p+r+la+sh++ +c++ehcLlcElgf+ +ml++a+g ncqasnF+++++ + +  +a++li ++ +e   + + ++
  CDO68870.1 478 SGLETHILNSYTNPLVQVMHYTAPIRRLAKSHITIDCPHEHCLLCELGFVARMLEDAHGINCQASNFCKTVGVLAQMhNAIELI-DYGRE---TPDLTY 572
                 8********************************99*************************************999954*****9.87766...5789** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  99 ssliqsfnrflldqlekelketkkns............seeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilks 185
                 s++iq f+rfl+d+l++e ++ ++n+            s+++++i+qllg++a++ i+ +              +d          ++++++fasil++
  CDO68870.1 573 SHMIQMFHRFLVDRLSTEGNSFPHNPtllpdagppdphSPAPAPITQLLGIDAKNIIQPT--------------ND----------PSHETDFASILRN 647
                 **********************9999***********************97776665544..............22..........2345799****** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 186 slerekttrawCekCkryqpteqrktvk..nlPpvLalnakleeeeelelwkt...knwlpleiklsldedknleeklkeerekakaekeikvYeLqsv 279
                 sl r +t++a+C++Ck+++++e+r++++  +lPp+La+na++++e+++++w++   +++l+++++l+ + ++              ++ e++vYeL+++
  CDO68870.1 648 SLLRRTTHKATCQTCKHFATFESRRSIRtrDLPPILAVNAAVHNEDTHKFWRDhrrQTFLKPRVELRGQIEG-------M------DDPETVVYELRAM 733
                 ****************************99*************9999*****99877*********655544.......2......34589******** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 280 vvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 vv++  +++++hLv+lvkv+e e+  +++ ++Wy+FNDflV
  CDO68870.1 734 VVQVVAKDSNSHLVALVKVPEAEQ--SQESEPWYIFNDFLV 772
                 *****8888**********66654..57777********98 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.1e-24   3.9e-21       1     165 []     850    1023 ..     850    1023 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.1e-24
                  EEEEEEESSSTT............CTTS-EEEEEEEEEETTCC..EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHH CS
     RNase_T    1 vviDlEttglda............kekdeiieiaaisidggen..eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrk 83  
                  ++iD+E++++++             ++++ +++a++s+ +g+   e+ ++++++++  e   + d++tef+gi   +ld+  s ++    +k +++k
  CDO68870.1  850 IAIDAEFVSMQQeeteyrsdgtkkVIRPARLSLARVSVLRGDGpkEGVPFIDDHIHTSEI--IVDYLTEFSGIKFGDLDPSLSRYTLT-PLKVVYKK 943 
                  68*******************9995599********************************..***********************555.5******* PP

                  HTCCCETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T   84 lallvahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr.aHrAldDaeataklf 165 
                  l+llv  + ++++g++  +d+ri+++ vp  +q++dt++l +  +++++  sl++l + +++e++++  H++++Da+ ++kl+
  CDO68870.1  944 LRLLVDSG-CTFIGHGLSKDFRIINIFVP-PEQVIDTVDLYYLENRQRRL-SLRFLTWFVLKENIQTdTHDSIEDALSALKLY 1023
                  ******99.*****************999.**********9999999997.****************************9997 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.6e-07   0.00059      10     251 ..     487     789 ..     478     795 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGT.............SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xx RF
         UCH  10 CymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfs.............gy 95 
                 +y n ++Q++  ++++r++ +s  + +   ++               l+++l  + + l   +  + + +++ kt++ la++ +               
  CDO68870.1 487 SYTNPLVQVMHYTAPIRRLAKSHITIDCPHEHC--------------LLCELGFVARMLEDAHGINCQASNFCKTVGVLAQMHNaielidygretpdLT 571
                 566666666666666666666622222222222..............4444444444444334444444444444444444433333444444444433 PP

                 STCEHHHHHHHHHHHHHHHHCC....................................................HCCCHHH..HHHCCCTTSHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxx....................................................xxxxxxx..xxxxxxxxxxxxxxxx RF
         UCH  96 kqqDaqEflaflLdqlhedlnr....................................................evaeekw..kkhlkrndslitdlfe 140
                   +  q f +fl+d+l+ + n+                                                    +  ++    + ++k+ +++ ++   
  CDO68870.1 572 YSHMIQMFHRFLVDRLSTEGNSfphnptllpdagppdphspapapitqllgidakniiqptndpshetdfasilR--NS-LlrRTTHKATCQTCKHFAT 667
                 444567799999999999999988888777776666666666666666666666665555555555555543221..12.1234444444444455555 PP

                 EEEEEEEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEE....CTTTTE. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx....xxxxxx. RF
         UCH 141 gqlksklklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHYvayik....nekngk. 230
                 ++ + +++   lP+iL ++    + +     ++  ++++  p +++l   ++     + +e   YeL a+vv    + s+ H va++k    +    + 
  CDO68870.1 668 FESRRSIRTRDLPPILAVNAAVHNEDTHkfwRDHRRQTFLKP-RVELRGQIE---GMDDPETVVYELRAMVVQVVaKDSNSHLVALVKvpeaE----Qs 758
                 555559999**********99666655567655555555555.455544344...333445678*********9999********99965431....33 PP

                 .....EEEEETTEEEEE-HHCCCTT......C CS
                 .....xxxxxxxxxxxxxxxxxxxx......x RF
         UCH 231 .....WykydDetvkevkeeeevls......s 251
                      Wy ++D  v++++ee evls       
  CDO68870.1 759 qesepWYIFNDFLVQNLNEE-EVLSfpsdwkV 789
                 45667*************88.88886666653 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.5e+03      38      62 ..      19      43 ..      11      47 .. 0.85
   2 ?    0.0   0.0      0.29   1.1e+03      49      89 ..     116     154 ..      97     157 .. 0.76
   3 ?    0.7   0.0      0.19   6.8e+02      40      68 ..     148     176 ..     119     195 .. 0.73
   4 ?    2.4   0.0     0.053   1.9e+02      47      84 ..     250     287 ..     247     292 .. 0.81
   5 ?    4.7   0.0     0.011        39      39      73 ..     285     319 ..     276     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavaysdgev 62
                  + +++L++ p   +L  +++ g++
   CDO68870.1 19 PQPITALSFDPVSDILWSGTNSGHI 43
                 578999***********99999987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.29
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + + ++v+++  e+ ll++++g vv+  ++ s    t l++
   CDO68870.1 116 NSSAIVVSTAAPELLLLNIQTGAVVRRTPAPSI--LTHLHY 154
                  4568999999***************99988766..566665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.19
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldae 68 
                    ++L++  + + ++ + +dg +rl+d  
   CDO68870.1 148 ILTHLHYTASQSYFVSGDADGWIRLHDPR 176
                  45788899999999999999999998865 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.053
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                   + g+ La+  s+g v+++da +  + + ++ ++ + v
   CDO68870.1 250 PNRGTTLAITSSQGLVQVVDATNPATNEFYQLDTPSYV 287
                  5789*****************99888777777666655 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.011
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  s v+s+a +p    +a++ sdg ++ll+a +++ +
   CDO68870.1 285 SYVSSVAISPTAAYMAFGDSDGVIHLLSAADEEAM 319
                  6689999999*******************998865 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   4.9e+03      12      29 ..      21      38 ..      16      44 .. 0.72
   2 ?    4.6   0.0     0.019        69      13      38 .]     148     174 ..     138     174 .. 0.85
   3 ?   -1.3   0.0       1.3   4.8e+03       6      38 .]     187     227 ..     183     227 .. 0.59
   4 ?    4.4   0.0     0.021        75      11      36 ..     285     310 ..     276     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
                SEEEEEEETTSSEEEEEE CS
        WD40 12 svtslafspdgawlasGs 29
                ++t+l+f+p ++ l sG+
  CDO68870.1 21 PITALSFDPVSDILWSGT 38
                599999999888852455 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
                 E.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 v.tslafspdgawlasGsdDgtvriWd 38 
                 + t+l +  ++++++sG+ Dg +r+ d
  CDO68870.1 148 IlTHLHYTASQSYFVSGDADGWIRLHD 174
                 55899999999******99*****965 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.3
                 EEESS.SSEEEEEEETTSSEEEE.E.ET.......TSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlas.G.sd.......DgtvriWd 38 
                 + ++H s++ ++    ++++l++ G +        D+ v+i+d
  CDO68870.1 187 SVKAHiSGIQGI--ETSSTLLFTiGlGVrqgrpfpDPLVKIYD 227
                 567898888887..55555554334332345566677777776 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.021
                 SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvri 36 
                 s v+s+a sp  a++a G+ Dg +++
  CDO68870.1 285 SYVSSVAISPTAAYMAFGDSDGVIHL 310
                 3499**********999966**9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 7030.25
//
Query:       CDO68871.1  [L=435]
Description: hypothetical protein BN946_scf185000.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-73  247.5   0.0    3.3e-44  151.5   0.0    2.1  2  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   5.6e-31     1e-26       2     113 ..      85     214 ..      84     219 .. 0.88
   2 !  151.5   0.0   1.8e-48   3.3e-44     121     277 ..     259     424 ..     255     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 5.6e-31
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBT.HCHEETTTTE..SCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHT............... CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarlee.aleynlelgv..leelkivdlgdvavtpvdneevleqieeavaeilka............... 82 
                 dva++G+Pfd+a+s+rpGarfGP+ ir++s+rl+  ++  n+ +++  +++l++vd+gdv++  +dn+ +l+q+e a a++l++               
  CDO68871.1  85 DVAVVGAPFDTATSFRPGARFGPNGIRQGSRRLGVdRI--NVPAKIrvSDHLEVVDCGDVPMVQTDNKVALRQLELANAALLSHtslhsysgkslakdg 181
                 89********************************6344..454455569*************98899889**************999999999999998 PP

                 ..TCEEEEEESSGGGHHHHHHHHHHHHSTTEEE CS
    Arginase  83 ..gklpivlGGDHsialgilralaekygkplgv 113
                   + ++++lGGDH+i+l+ lr++a +yg+   v
  CDO68871.1 182 kfHPRVLTLGGDHTITLPLLRGVASVYGPVRYV 214
                 888888********************9964445 PP

  == domain 2  score: 151.5 bits;  conditional E-value: 1.8e-48
                 ---SSC.........TTTBSSSTTSHHHHHHHHTSECG.CEEEEEEE-STCSH..HHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEE CS
    Arginase 121 Dlrtpe.........tegsgnshGtpfrraaeegllkp.kklvqiGirsvdne..eyelakelgirvitmreidelglkavveeilervgaeedpvylS 207
                 D+++p+         +e+   shG++f++a++egll p +  +++Gir+  n+  +y+++ e g+ + ++++++++g + vv++i++ vg  ++pvyl+
  CDO68871.1 259 DTWKPKqttggpwlpDEEIPVSHGSYFWYAYKEGLLAPnNANIHVGIRGAINSwqDYDDDYEFGWVISHAEDVEDMGWQGVVKRIRDTVG--DNPVYLT 355
                 777777544444444455569***************997789***********999999999***************************8..56***** PP

                 EEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHH CS
    Arginase 208 fDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrel 277
                 +DiDv+Dp +aP+tGtpe gG+t+re++++l++la+ l++vgaD+vEv+P +dt++e+t ++aa++ +e+
  CDO68871.1 356 LDIDVIDPGMAPATGTPEIGGITTREIKKILQGLAG-LKIVGADIVEVAPGYDTQDEITQIAAANIGWEI 424
                 ************************************.*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3014.85
//
Query:       CDO68872.1  [L=209]
Description: hypothetical protein BN946_scf185000.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1623.30
//
Query:       CDO68873.1  [L=1838]
Description: hypothetical protein BN946_scf185000.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.8e-101  338.3   0.0   2.5e-100  336.8   0.0    1.8  1  DUF3535        Domain of unknown function (DUF3535)
    6.8e-67  225.6   0.2    1.2e-66  224.8   0.2    1.4  1  SNF2_N         SNF2 family N-terminal domain
      3e-17   63.0   0.0    6.9e-17   61.8   0.0    1.6  1  Helicase_C     Helicase conserved C-terminal domain
    6.1e-10   38.5  17.4       0.14   12.4   0.0    8.9  9  HEAT           HEAT repeat
    4.3e-05   23.6   0.0    0.00011   22.3   0.0    1.7  1  ResIII         Type III restriction enzyme, res subunit
    0.00022   21.6   8.5         18    6.0   0.0    7.6  7  HEAT_EZ        HEAT-like repeat
     0.0009   19.2   0.1     0.0034   17.3   0.1    2.1  1  DUF3385        Domain of unknown function (DUF3385)
     0.0024   18.2   5.0          3    8.3   0.0    6.0  6  HEAT_2         HEAT repeats
     0.0037   17.8   0.0        1.7    9.3   0.0    2.9  2  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.041   13.0   0.0      0.084   12.0   0.0    1.5  1  Dopey_N        Dopey, N-terminal
      0.075   12.6   0.2        1.1    8.7   0.1    2.9  2  CLASP_N        CLASP N terminal
       0.19   11.7   1.3         40    4.2   0.0    3.9  4  Cnd1           non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> DUF3535  Domain of unknown function (DUF3535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.8   0.0  1.7e-103  2.5e-100      17     434 ..     620    1039 ..     602    1040 .. 0.89

  Alignments for each domain:
  == domain 1  score: 336.8 bits;  conditional E-value: 1.7e-103
     DUF3535   17 aacphlsswlcLamtPigvpldpslllkpsgqaksssekkkkkeeeasskrkrskkkaeakgekasasshnvdkeyiggdetlvgeeanviraRiaa 113 
                  +++++l +w+ ++mtP g+pld+s +++p+                           + ++g    ++ hnvdk+++++d++l++ e +vi+aR+a+
  CDO68873.1  620 ITQQLLLEWYAVVMTPLGLPLDASSFYDPTV--------------------------GADTG--GPSERHNVDKNMLAQDLALIPIE-VVIQARLAT 687 
                  5688999**********************11..........................12222..234449*****************.********* PP

     DUF3535  114 akaLGlllsylpees......pldcytkvLlghLnsksalqrlvaalvieewakedkkekk.......evstlpetlqeklleiLeeeepvyYdEla 197 
                  ++aL+++++ + +++        d +  +L+++++s+s+lq+++aa++ e wa+e +++         evs+l+++l++k l++L+++ p  Y+E+a
  CDO68873.1  688 SSALAQIIAFWSMTTkgeylsVDDMFRPILIHYIDSTSMLQKFLAAIIAEGWAREYDARAVkgaslliEVSPLAAELSQKTLAWLQADPPAAYHEMA 784 
                  ***********55555566658899*******************************765559******99*************************** PP

     DUF3535  198 lsltrlrqecqdllatlesvgklpklavvvqgeae.......kaftleqaeklvttdyekllkslslkqkllaekqLeerrrrlqaaieeakeeqea 287 
                  ++l r++ ec +ll+++++++klp+ a+ + g          ++ft+e+a++ v+++++kl+ sl +++k+     ++e+r ++ ++ie++ e++++
  CDO68873.1  785 FTLARIQGECYNLLQSFAHDCKLPQSAIPSLGTEIdvagtkpGCFTIETAQAAVGEMFNKLKDSLGRTKKREL-AIIKEKRLKVVTSIERYIEVKAQ 880 
                  *****************9999877777766554334567788***********************98888876.69********************* PP

     DUF3535  288 lhvrvqaalAgAlvalkelPkKLnpvikpLMeSiKkEeneeLQqrsAkalakLielcvdr.kpcpndKIvkNLctflcsDtsetPef.....kkegI 378 
                  ++vrv aa+A+A+va+k+ P+K++p++k++M+SiK+Een +LQ++sA+a+a+++e cv+r   +p dKIvkNLctflc+D ++tP+f      ++g+
  CDO68873.1  881 YDVRVAAAFAAAFVAFKSTPDKVSPIVKGIMNSIKTEENLDLQTHSAAAVASFVEFCVQRdLVQPPDKIVKNLCTFLCQDVEQTPTFlynrkITDGV 977 
                  *************************************************************9*********************************** PP

     DUF3535  379 ltlkkeedkaeaa......daaeeeeeakeariqrrGAelaLetlakkFgasLfekvPkLwe 434 
                  l++ ++++ ++a+      + a++ e   +a+++rrGA la+e+l+ +Fg++L++ vP++w+
  CDO68873.1  978 LSFPRSTAATAANgkengdKHAAAGEDPVKAKLSRRGARLAFEKLSMQFGPRLLQVVPRMWQ 1039
                  *****9988886434444322333333336*******************************8 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.2   8.3e-70   1.2e-66      50     350 .]    1266    1561 ..    1221    1561 .. 0.87

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 8.3e-70
                  HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---........S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH----------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkek.krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapk 145 
                  ++ + +  GiL+D+mGLGKT+q++++++ ++++++++ ++ k  d    p Liv+P +l  +W+ ei +++++ +   + y+g++++    +  +  
  CDO68873.1 1266 FLAKYQLHGILCDDMGLGKTLQSICILASKHYERAQKYKEtKSPDSKHLPSLIVCPPTLTGHWYYEILKYTENLR--PVLYTGNSRE----RYKLLP 1356
                  55666678********************777655444433488899999**********************9885..5666665433....333566 PP

                  ------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  146 lladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfd 242 
                   l+ ydvv+t+Y+v++++         l++++w++ +lDEgh +kn ++k+++av+ +++ +r+il+GTPiqn++ +l++L++fL+++ +g+  +f+
  CDO68873.1 1357 KLKSYDVVVTSYEVVRNDI------ANLQDLNWHYCILDEGHIIKNAKTKLTKAVKCIKAVHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEASFN 1447
                  6899************888......9*********************************************************************** PP

                  HHTHHHHH..........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-H CS
                  xxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  243 kllqrpie..........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssks 329 
                  +++++pi           + a    + L++ + +++lrr k+dv ++lPpk+ +  +++ls+ ++ +Y         k +ak+ + +++  +++++ 
  CDO68873.1 1448 ERFSKPILsnrdgkaktgEAAALALEALHKQVLPFLLRRLKEDVLHDLPPKIIQDYYCELSELQKFLYD-----DFSKSRAKMEVDDVVRANKEQDG 1539
                  *************99888888888899999999************************************.....66777888888888888888888 PP

                  H.H-HHHHHHHHHHHHH---XX CS
                  x.xxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  330 k.ekilelllelrqacnhpqlv 350 
                  k e+i+++l+ lr+ cnhp lv
  CDO68873.1 1540 KqEHIFQSLQYLRKLCNHPALV 1561
                  8788***************985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   4.6e-20   6.9e-17      15     111 .]    1633    1734 ..    1624    1734 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 4.6e-20
                  TTSEEEEEESSHHHHHH..HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTT CS
  Helicase_C   15 eggkilifvntidrlek..vklllekk.gikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGR 106 
                  +++++lif++ +++l+   ++l++++  ++++ +l+g++  n+r ++++ fn + ++d +L++t v++ G++++++++Vi+++ ++n+ +  q+++R
  CDO68873.1 1633 SQHRVLIFCQMKQMLDIieTDLFKQHMpSVTYMRLDGSTDPNKRHAVVQTFNsDPSIDcLLLTTHVGGLGLTLTGADTVIFVEHDWNPMKDLQAMDR 1729
                  5899***********98989999555599***********************778999999************************************ PP

                  SSSTT CS
  Helicase_C  107 tgRag 111 
                  ++R+g
  CDO68873.1 1730 AHRIG 1734
                  ***97 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0047       7.1       9      30 ..     274     295 ..     266     296 .. 0.82
   2 ?   -0.5   0.0       1.4   2.1e+03      15      28 ..     346     359 ..     338     362 .. 0.81
   3 !    7.3   0.1    0.0043       6.4       9      29 ..     453     473 ..     447     475 .. 0.83
   4 ?    4.3   0.0     0.041        61       3      28 ..     539     564 ..     537     566 .. 0.86
   5 ?   -2.8   0.0       7.6   1.1e+04       2      23 ..     579     601 ..     578     603 .. 0.73
   6 ?   -3.1   0.2       9.5   1.4e+04      15      23 ..     882     890 ..     880     890 .. 0.84
   7 !   10.8   0.1   0.00032      0.49       1      30 [.    1094    1123 ..    1094    1124 .. 0.91
   8 !   12.4   0.0   9.6e-05      0.14       3      29 ..    1177    1202 ..    1175    1204 .. 0.84
   9 ?   -1.2   0.0       2.4   3.6e+03      10      24 ..    1669    1683 ..    1659    1685 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0047
                 HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   9 lsDpspeVReaAakaLgalaev 30 
                 l + ++eVR  Aa aL +l++v
  CDO68873.1 274 LFSAAWEVRHGAAMALRELLKV 295
                 56789**************986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgala 28 
                  VRe++ ++L+ l+
  CDO68873.1 346 PVRETVSQTLASLL 359
                 5*********9986 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0043
                 HT-SSHHHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgalae 29 
                 l D + +VR+ Aa +L  +a+
  CDO68873.1 453 LGDRDDDVRSVAASCLLPVAS 473
                 79*************976666 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.041
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 P+l    +++ ++VR a++k+L +++
  CDO68873.1 539 PTLFPFFRHTISNVRFAVVKTLHTFM 564
                 778888899999**********9987 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 7.6
                 HHHHHHHH.T-SSHHHHHHHHHH CS
        HEAT   2 lPlllkll.sDpspeVReaAaka 23 
                 l ll ++l   + +++R+a++ a
  CDO68873.1 579 LRLLFQNLiVEERSDIRQATLAA 601
                 566666654779999***99876 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 9.5
                 HHHHHHHHH CS
        HEAT  15 eVReaAaka 23 
                 +VR aAa a
  CDO68873.1 882 DVRVAAAFA 890
                 7*****986 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00032
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  l+P++  +l++  + VR++Aa+++ +++ v
  CDO68873.1 1094 LFPHVTLALRSRYAIVRQSAARCFSTMCDV 1123
                  689998999*******************87 PP

  == domain 8  score: 12.4 bits;  conditional E-value: 9.6e-05
                  HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalae 29  
                  P+ l  +sDp+ +VR++A ++++ l++
  CDO68873.1 1177 PV-LGRMSDPDDDVRSTATNTFASLVK 1202
                  55.5557****************9997 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 2.4
                  T-SSHHHHHHHHHHH CS
        HEAT   10 sDpspeVReaAakaL 24  
                   +++p+ R a+++++
  CDO68873.1 1669 GSTDPNKRHAVVQTF 1683
                  789*********998 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.3e-08   0.00011       2     170 ..    1251    1421 ..    1250    1422 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.3e-08
                  -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGTGG....GE CS
      ResIII    2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee............kflflvprkslleqtleefkkflseaykeig 86  
                   elr+yQ+e ++ l+  l  k + +g++    G GKTl ++ + ++ + ++ ++              l+++p  +l+  ++ e+ k++++ +    
  CDO68873.1 1251 AELRKYQQEGVNWLA-FLA-KYQLHGILCDDMGLGKTLQSICILASKHYERAQKyketkspdskhlPSLIVCP-PTLTGHWYYEILKYTENLR---P 1341
                  589*******97665.665.899**************988555544444444444599*****9877777777.689************9985...5 PP

                  EEESSS-B--.........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS-S CS
      ResIII   87 kkvsgdkkka..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATpe 170 
                    ++g+++++     + ++ +++vt+++ + +d+         l++ +  + i DE H ++ +k + +++++++k+  +l l++Tp 
  CDO68873.1 1342 VLYTGNSRERykLLPKLKSYDVVVTSYEVVRNDI-------ANLQDLNWHYCILDEGHIIKNAKtKLTKAVKCIKAVHRLILSGTPI 1421
                  56666666665556799*****************.......6677778889********99874599999***************96 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.023        34       1      16 [.     279     295 ..     279     304 .. 0.75
   2 ?    0.5   0.0      0.61   9.1e+02       1      28 [.     402     429 ..     402     430 .. 0.80
   3 ?   -1.2   0.1         2   3.1e+03      24      51 ..     444     467 ..     436     468 .. 0.67
   4 ?    1.7   0.0      0.25   3.8e+02       4      40 ..     923     960 ..     921     963 .. 0.89
   5 ?    3.2   0.0     0.091   1.4e+02       3      49 ..    1109    1153 ..    1107    1159 .. 0.76
   6 ?    6.0   0.0     0.012        18      28      54 ..    1174    1199 ..    1164    1200 .. 0.79
   7 ?    0.8   0.1      0.49   7.3e+02      21      39 ..    1471    1489 ..    1463    1492 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.023
     HEAT_EZ   1 wrvRraAawaLGr.lag 16 
                 w+vR++Aa+aL + l +
  CDO68873.1 279 WEVRHGAAMALRElLKV 295
                 9**********555444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.61
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqplvpe 28 
                 w+vR+a+++++   +a ++++l+++ vp+
  CDO68873.1 402 WEVRHAGLLGIKYeVA-VRSDLVSLDVPD 429
                 9**********77666.788888777765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2
     HEAT_EZ  24 plvpeilpaLlalLnddsd.eVRaaAaga 51 
                 ++v++++  L+     d d +VR  Aa +
  CDO68873.1 444 GVVDAAVLGLG-----DRDdDVRSVAASC 467
                 56777777777.....6666999766655 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.25
     HEAT_EZ   4 RraAawaLGr.laggepellqplvpeilpaLlalLndd 40 
                 + + a+a+++ ++++  ++l +  ++i++ L+ +L+ d
  CDO68873.1 923 QTHSAAAVASfVEFCVQRDLVQPPDKIVKNLCTFLCQD 960
                 677899**99*********************9999665 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.091
     HEAT_EZ    3 vRraAawaLGr.laggepellqplvpeilpaLlalLnddsd.eV.RaaAa 49  
                  vR +Aa+++++ + +   e+++ ++++ilp+L+     d+  +  R+ A+
  CDO68873.1 1109 VRQSAARCFSTmCDVLTVEAMRFVIEKILPYLG-----DPLvLAnRQGAI 1153
                  89*******997666666677779999999999.....876555666665 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.012
     HEAT_EZ   28 eilpaLlalLnddsdeVRaaAagaLgn 54  
                   ++p L+ +++d++d+VR +A  +++ 
  CDO68873.1 1174 MVVPVLG-RMSDPDDDVRSTATNTFAS 1199
                  5778888.8889999******999876 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.49
     HEAT_EZ   21 llqplvpeilpaLlalLnd 39  
                  +l+ l++++lp+Ll++L+ 
  CDO68873.1 1471 ALEALHKQVLPFLLRRLKE 1489
                  5677899*******99954 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.3e-06    0.0034      29     160 ..    1067    1204 ..    1057    1205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.3e-06
     DUF3385   29 revikllGilGALDPykhkqveer........aedk..krreeaaretdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnif 115 
                  ++vi  l++l A+ P +h +++++        +     ++r  a   ++ ++   +++   +     +vi+++l  l dp +  ++++++e i +i+
  CDO68873.1 1067 QDVIDSLSVLEAVVPTFHEELSHHftglfphvT--LalRSRY-AIVRQSAARCFSTMCDVLTVEAMRFVIEKILPYLGDPLVLANRQGAIELIYHIV 1160
                  567777778888888888777777665554431..1222222.3333334444555556555555568***************************** PP

     DUF3385  116 ktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvsiv 160 
                  ++l++k +p++   +  +l  +++ ++  +r + ++ +a+Lv++v
  CDO68873.1 1161 QKLDIKALPYVIFMVVPVLGRMSDPDD-DVRSTATNTFASLVKMV 1204
                  *********999999999999999888.9*************998 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.3   4.4e+02      11      57 ..     276     291 ..     264     316 .. 0.67
   2 ?    1.3   0.1      0.31   4.6e+02      37      77 ..     450     500 ..     443     505 .. 0.61
   3 !    8.3   0.0     0.002         3      31      86 ..     536     601 ..     515     603 .. 0.75
   4 ?   -1.5   0.0       2.3   3.5e+03      42      63 ..     878     902 ..     855     922 .. 0.63
   5 ?    0.6   0.0      0.52   7.8e+02      39      53 ..    1181    1195 ..    1160    1235 .. 0.76
   6 ?    0.8   0.1      0.43   6.4e+02      44      74 ..    1461    1490 ..    1453    1494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.3
      HEAT_2  11 dpdpevrraairaLgrignpealpaLvellededpavRraaaeaLga 57 
                 +                               + ++vR+ aa+aL +
  CDO68873.1 276 S-------------------------------AAWEVRHGAAMALRE 291
                 3...............................445566666665543 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.31
      HEAT_2  37 vellededpavRraaaeaL....gai.......gdpealpaLkelldddddd 77 
                 v  l d d +vR  aa  L    + +        +p++l++L  +l d +dd
  CDO68873.1 450 VLGLGDRDDDVRSVAASCLlpvaS-YlverspdELPRVLSVLWSCLSDMKDD 500
                 555678888888888887744321.123223222477888888888776665 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.002
      HEAT_2  31 ealpaLvellededpavRraaaeaL...........gaigdpealpaLkellddddddvvReaAaea 86 
                  + p+L+++ +++ ++vR a++++L            +ig p +l++L + l  ++ +++R+a++ a
  CDO68873.1 536 VLAPTLFPFFRHTISNVRFAVVKTLhtfmtveslprTWIGVP-FLRLLFQNLIVEERSDIRQATLAA 601
                 4589*********************54444444333377777.999999999999999999987665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.3
      HEAT_2  42 dedpavRraaaeaLgaig...dpea 63 
                  +  +vR aaa a++ ++   +p+ 
  CDO68873.1 878 KAQYDVRVAAAFAAAFVAfksTPDK 902
                 4456777777777765432233443 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.52
      HEAT_2   39 llededpavRraaae 53  
                   ++d+d +vR +a +
  CDO68873.1 1181 RMSDPDDDVRSTATN 1195
                  456777777777765 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.43
      HEAT_2   44 dpavRraaaeaLgaigdpealpaLkellddd 74  
                  ++ + +aaa aL a+  + +lp+L+++l++d
  CDO68873.1 1461 KAKTGEAAALALEALHKQ-VLPFLLRRLKED 1490
                  566678999999999886.99****999987 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.022        33      28      88 ..     445     505 ..     436     515 .. 0.86
   2 !    9.3   0.0    0.0011       1.7       2      58 ..    1148    1204 ..    1114    1208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.022
  Vac14_Fab1_bd  28 ivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                    +v+  +  + D+d+ vR  a+ +l  +a  + ++    l +++++l++ ++D++ ++ s++
     CDO68873.1 445 VVDAAVLGLGDRDDDVRSVAASCLLPVASYLVERSPDELPRVLSVLWSCLSDMKDDLSSSV 505
                    5667777899******************************************998887665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0011
  Vac14_Fab1_bd    2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva 58  
                     +r+g++  ++ +   l+ k+ +y+  +v pvl  +sD d+ vR +a+ ++  ++k++
     CDO68873.1 1148 NRQGAIELIYHIVQKLDIKALPYVIFMVVPVLGRMSDPDDDVRSTATNTFASLVKMV 1204
                     467777777777788888888888889999999999999999999888888877765 PP

>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.6e-05     0.084      75     125 ..     515     565 ..     485     611 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
     Dopey_N  75 LevYelifenigseslskdlslylpGLlpllsyaslsvkpqlleliekyll 125
                 L  Y++++++i  es s+ + + +p L+p++++   +v++ +++ ++++++
  CDO68873.1 515 LVAYDRVIQIIADESRSHPITVLAPTLFPFFRHTISNVRFAVVKTLHTFMT 565
                 778*******************************************99986 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         4     6e+03      11      32 ..     392     413 ..     387     417 .. 0.86
   2 ?    8.7   0.1   0.00076       1.1      76     211 ..    1075    1208 ..    1069    1209 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4
     CLASP_N  11 afegketelnwdaReknilklr 32 
                  fe++e+ + w+ R + +l ++
  CDO68873.1 392 KFEDREKGHVWEVRHAGLLGIK 413
                 69**************999988 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00076
     CLASP_N   76 llkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfs.pri.lqvlsvalqdKnv.qpReysaiwLkilltrfeshkskle 169 
                  +l+ ++ +++e+l +    l+p+    l +   i++q+a+ ++++++  ++++  r  +  +   l d  v   R+ +++++  ++++     ++l 
  CDO68873.1 1075 VLEAVVPTFHEELSHHFTGLFPHVTLALRSRYAIVRQSAARCFSTMCDVLTVEaMRFvIEKILPYLGDPLVlANRQGAIELIYHIVQKLD--IKALP 1169
                  566667778888888888899999999999999999999999999998888531455566666667776652558888888888888888..33333 PP

     CLASP_N  170 asllldliekslkkgleDanptVRetaRstfweffkvwPsrA 211 
                  +   + +++++l + ++D++  VR+ta +tf ++ k++P +A
  CDO68873.1 1170 YVI-F-MVVPVLGR-MSDPDDDVRSTATNTFASLVKMVPLEA 1208
                  333.3.57777766.69********************99877 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.11   1.6e+02      29      76 ..     452     503 ..     445     529 .. 0.75
   2 ?   -3.6   0.0       6.7     1e+04      92     132 ..     840     880 ..     832     886 .. 0.78
   3 ?    0.4   0.0      0.39   5.8e+02      23      68 ..    1095    1141 ..    1087    1150 .. 0.79
   4 ?    4.2   0.0     0.027        40      22      50 ..    1174    1202 ..    1168    1209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
        Cnd1  29 rLkDedpyVRktaaivvakL....ilndmvkekgflselaklleDenprVva 76 
                 +L D+d  VR  aa +++ +    +++   +   +ls l ++l+D ++  ++
  CDO68873.1 452 GLGDRDDDVRSVAASCLLPVasylVERSPDELPRVLSVLWSCLSDMKDDLSS 503
                 689*************988877433333444444777777787777766655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.7
        Cnd1  92 aiynllpdiisklsdalnecsewgqitilefLlsyipkdkq 132
                 +++n l+d++ + +++   + ++++ ++++++ +yi+ ++q
  CDO68873.1 840 EMFNKLKDSLGRTKKRELAIIKEKRLKVVTSIERYIEVKAQ 880
                 56777888888888777779999999999999999987766 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.39
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklle 68  
                   ++++ +L+ + + VR+ aa +++ + +  +v+    ++++++  l 
  CDO68873.1 1095 FPHVTLALRSRYAIVRQSAARCFSTMCDVLTVEAMRfVIEKILPYLG 1141
                  677888999999************99887777777755666665555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.027
        Cnd1   22 lvepLrkrLkDedpyVRktaaivvakLil 50  
                  +v p+  r++D+d  VR ta  ++a L++
  CDO68873.1 1174 MVVPVLGRMSDPDDDVRSTATNTFASLVK 1202
                  56678889***************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.49
# Mc/sec: 11388.39
//
Query:       CDO68874.1  [L=977]
Description: hypothetical protein BN946_scf185000.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-36  125.6   0.0    4.9e-36  124.7   0.0    1.3  1  Cupin_8       Cupin-like domain
    4.7e-06   26.3   0.0    7.8e-06   25.6   0.0    1.3  1  Cupin_4       Cupin superfamily protein
    6.3e-05   22.6   0.0    0.00014   21.5   0.0    1.5  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.018   15.4   0.1       0.19   12.2   0.0    2.2  2  JmjC          JmjC domain, hydroxylase
       0.02   14.5   0.0      0.044   13.4   0.0    1.5  1  Cupin_1       Cupin
      0.027   14.4   0.2      0.058   13.3   0.2    1.4  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.0   1.6e-39   4.9e-36      11     236 ..     101     357 ..      94     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 1.6e-39
     Cupin_8  11 kskPviikgalkdwpalqk..wtddeylleylkekaed.vkvsvektpdgeadsfkeneelkfvkpeeeemtfkdfldelearrdtrsepyaylqnanl 106
                 +++P+++ g+lkdwpal++  w++    l+yl+ +a+  + v ve+++d +ad+             ++ m+ +dfl++l  ++++ ++p++yl++ +l
  CDO68874.1 101 SRQPFVLPGFLKDWPALSEhpWNS----LDYLRAVAGPgRVVPVEVGNDYRADDWT-----------QRMMPWEDFLERLGGSSQNGAHPILYLAQHSL 184
                 699**************9955665....8*****9665277779999988888887...........689***************************** PP

     Cupin_8 107 asefpelked........sdlpfateafgkkpe......avnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyea............. 178
                  ++fp l++d        s+l+ ++ + +  p         n WlG++++vs  H D++ N+y++v GrK ++L pP  ++++y+              
  CDO68874.1 185 FKQFPALRDDiilpdyvySSLDAPDGYPQYAPPsnedqlVLNAWLGPARTVSPAHTDPFYNFYAQVVGRKSIWLAPPGVSQYMYPYpstssqtssmkde 283
                 ********9966665665444444433333322455555899*****************************************9996555555555554 PP

     Cupin_8 179 .......slsptedgtv........vssvdve.......epdlekfprlkda..kkalevtlnaGevLylPalWfHeVksla 236
                                 +        +s+vdv        + ++e+fp + +    +a++vtl++G+ L+ P +W+H  ++ +
  CDO68874.1 284 dhprnpaA--------NnespsmsnTSRVDVFvatgdeiSQSEETFPDFWKQviPEAMHVTLEPGDLLFFPPGWWHAMRNEG 357
                 44444442........044444444999**99999996666669*****9999*9*********************998763 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.6e-09   7.8e-06     177     220 ..     334     381 ..     311     465 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.6e-09
                 EEEE-TT-EEEE-TT-EEEEEBBT....-CCEEEEEECCEEHCCHHHC CS
     Cupin_4 177 dfvLepGDlLYlPrgviHqgvaed....esltlSvglraptaaelles 220
                  + LepGDlL++P+g++H  + e+     sl++Sv +    ++e++ +
  CDO68874.1 334 HVTLEPGDLLFFPPGWWHAMRNEGhsrySSLSYSVAVAELVIHEIIVH 381
                 578***************999998656677888887776666666544 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.8e-08   0.00014      39      63 ..     335     359 ..     330     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.8e-08
                 EEEETTEEEEE-TT-EEEEEE-SSS CS
     Cupin_2  39 veleaGdsvyfpagtpHrfrNtgde 63 
                 v+le+Gd+++fp+g +H++rN+g+ 
  CDO68874.1 335 VTLEPGDLLFFPPGWWHAMRNEGHS 359
                 89********************975 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.35   1.1e+03       4      38 ..     229     261 ..     227     296 .. 0.87
   2 ?   12.2   0.0   6.2e-05      0.19      82     105 ..     334     357 ..     315     362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.35
                 EE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE- CS
        JmjC   4 lgmpksttpwhiedqglySinylhfgapkvWyiip 38 
                 lg+ ++  p+h++    ++   + +g++ +W++ p
  CDO68874.1 229 LGPARTVSPAHTDPFYNFY--AQVVGRKSIWLAPP 261
                 79999*********99885..78899999998766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.2e-05
                 EEEE-TT-EEEE-TT-EEEEEESS CS
        JmjC  82 rfvqkpgefVfvfpgayHsvfnlg 105
                  ++ +pg+++f +pg++H+  n g
  CDO68874.1 334 HVTLEPGDLLFFPPGWWHAMRNEG 357
                 67899***************9987 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.044      76     105 ..     330     359 ..     303     368 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                 .EEEEEEEETTEEEEE-TT-EEEEEEESSS CS
     Cupin_1  76 nrdfhkklreGdvfvvPaglvhfqynsgde 105
                  + +h +l++Gd++ +P+g+ h++ n g++
  CDO68874.1 330 PEAMHVTLEPGDLLFFPPGWWHAMRNEGHS 359
                 3479999********************965 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     2e-05     0.058      43      93 ..     335     383 ..     333     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                   EEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEET CS
  AraC_binding  43 ydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilag 93 
                   + l+pGdl+++ppg +H ++ ++  + +y +l+++ + +e   +++ ++a+
    CDO68874.1 335 VTLEPGDLLFFPPGWWHAMRNEG--HSRYSSLSYSVAVAELVIHEIIVHAS 383
                   5799*******************..99999999999999998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 6371.18
//
Query:       CDO68875.1  [L=567]
Description: hypothetical protein BN946_scf185000.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.2e-103  344.9   7.3    2.1e-94  316.9   1.1    2.1  2  FAD_binding_2   FAD binding domain
      1e-44  151.6   1.2    1.5e-44  151.0   1.2    1.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    6.2e-06   25.5   1.1     0.0084   15.2   2.2    2.3  2  GIDA            Glucose inhibited division protein A
    2.3e-05   23.7   0.2      0.023   13.9   0.0    2.7  3  Thi4            Thi4 family
    0.00054   19.3   1.5     0.0016   17.7   0.6    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0024   17.2   0.1     0.0042   16.4   0.1    1.4  1  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.025   13.7   0.1      0.051   12.6   0.0    1.5  2  Lycopene_cycl   Lycopene cyclase protein
      0.031   13.6   0.1      0.054   12.8   0.1    1.3  1  TAL_FSA         Transaldolase/Fructose-6-phosphate aldolase
      0.035   13.7   1.4       0.13   11.8   1.4    1.9  1  DAO             FAD dependent oxidoreductase
      0.087   11.5   1.8       0.37    9.4   0.6    2.5  3  HI0933_like     HI0933-like protein
       0.98    8.6   2.4        2.4    7.3   1.3    1.9  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.9   1.1   1.3e-97   2.1e-94       1     309 [.      51     344 ..      51     350 .. 0.98
   2 !   32.5   0.6   2.9e-11   4.7e-08     388     417 .]     347     376 ..     344     376 .. 0.94

  Alignments for each domain:
  == domain 1  score: 316.9 bits;  conditional E-value: 1.3e-97
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D+iV+G+G+AGL+AA  +aeaG ++a+++k ++++++t+++qGgi+a+l +++    ++d++++h++dt+k++d+l+dq+++++++++ap+ v eL
     CDO68875.1  51 DAIVVGAGGAGLRAAFGLAEAGFNTACITKLFPTRSHTVAAQGGINAAL-GNM----TEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRTVIEL 141
                    89***********************************************.888....5699*********************************** PP

                    HHTT----BCCTSSB-EEE-TT-SST.......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat.......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesg 185
                    e++gvpfsrt+dg++++r +Gg+s +        r+++ aad+      tghall++l+ + +++++ f+ +++a++Li++dg+++G+++ n+e+g
     CDO68875.1 142 EHFGVPFSRTKDGKIYQRAFGGQSLKygkggqaYRCAA-AADR------TGHALLHTLYGQSLRHNTNFFIEYFALDLIMQDGECVGVIALNMEDG 230
                    ********************************877777.***9......*********************************************** PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    + +r+ra+++vlatgG+gr          a++++t+a++++Gdg+a+++rag++l+d  +e+vqfhPt+++    g+g+Lite+ rgeGg+l++++
     CDO68875.1 231 TLHRFRAHKTVLATGGYGR----------AYFSCTSAHTCSGDGNAMVARAGLPLQD--LEFVQFHPTGIY----GAGCLITEGSRGEGGYLLNSE 310
                    *******************..........****************************..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs 309
                    G+rFm       ++lasrdvvsr+++  ei+eg++
     CDO68875.1 311 GERFMeryaptaKDLASRDVVSRSMT-IEIREGRG 344
                    **************************.****9998 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 2.9e-11
                    EEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 388 dgqpipGLYAaGevaaggvhganrlgGnsl 417
                    +++++pGLYAaGe+a+++vhganrlg+nsl
     CDO68875.1 347 KDKVVPGLYAAGEAACVSVHGANRLGANSL 376
                    6799************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   1.2   9.4e-48   1.5e-44       1     128 []     431     567 .]     431     567 .] 0.95

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 9.4e-48
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-S CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwl 95 
                     r +++k+mq++++vfRt+e+L+e++k+++++++ +++v+++d+s+++N++l+e+lel+nll++A +++++A +RkESrGaHared+perdDenw+
      CDO68875.1 431 RLDMQKAMQADAAVFRTQESLDEGVKKIRDIYKTYEQVGIKDRSMIWNSDLIETLELRNLLQCAIQTITAAANRKESRGAHAREDYPERDDENWM 525
                     568******************************************************************************************** PP

                     EEEEE....TT-SS-EEEEEE--GGG-........-S---SS CS
  Succ_DH_flav_C  96 khtlasld.aakeeveleyepveletl........kpkeRsY 128
                     khtl++++  ++ +v+l+y+ v  etl        +p +R+Y
      CDO68875.1 526 KHTLTWQRnVESPDVDLKYRRVISETLdenecksvPPFKRVY 567
                     ****9877356667********99999999999989999988 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.2   5.1e-06    0.0084       1      31 [.      51      81 ..      51     104 .. 0.81
   2 !    6.8   0.0    0.0019       3.1      99     167 ..     191     263 ..     160     289 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.1e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                d iV+G+G AG+ AA+ +a++G++++ it+ 
  CDO68875.1 51 DAIVVGAGGAGLRAAFGLAEAGFNTACITKL 81
                579**********************999654 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0019
                 HHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE...ETTS-..EEEECEEEE--TT-BT-EEEETTEEEESSC CS
        GIDA  99 kevteklenepnleiieeeveeliveekkvkgvv...tedge..tikakavviatGtflkgkihigekelsaGr 167
                 + + + l+++ n  i    + +li++++++ gv+   +edg+   ++a+++v+atG + ++   + + ++ +G 
  CDO68875.1 191 TLYGQSLRHNTNFFIEYF-ALDLIMQDGECVGVIalnMEDGTlhRFRAHKTVLATGGYGRAYFSCTSAHTCSGD 263
                 444555666666655444.455568899988876222345542267888***********99999888877776 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.4e-05     0.023      17      48 ..      49      79 ..      35      97 .. 0.88
   2 ?   -3.8   0.0       3.7   6.1e+03     109     138 ..     198     226 ..     184     230 .. 0.69
   3 !    6.8   0.0    0.0022       3.6     208     233 ..     347     373 ..     323     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvaile 48
                e D ++vGaG +GL aa+ la++ ++++a + 
  CDO68875.1 49 EYDAIVVGAGGAGLRAAFGLAEA-GFNTACIT 79
                789*******************9.99988775 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.7
                 TSTTEEEEESEEEEEEEEETBTEEEEEEEE CS
        Thi4 109 qlanvkllnavaveDlivregegvaGvvin 138
                    n   +    + Dli+++ge v  + +n
  CDO68875.1 198 R-HNTNFFIEYFALDLIMQDGECVGVIALN 226
                 4.5666666777779999998777666555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0022
                 ECEEETTEEE-THHH.HHHHT-EB--S CS
        Thi4 208 trevvpnlyvaGmev.aevdganRmGp 233
                   +vvp+ly+aG ++   v+ganR+G+
  CDO68875.1 347 KDKVVPGLYAAGEAAcVSVHGANRLGA 373
                 578*********8652689******97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   9.8e-07    0.0016       1      32 [.      50      85 ..      50     257 .. 0.83
   2 ?   -1.7   0.0       0.8   1.3e+03     261     278 ..     347     361 ..     327     372 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.8e-07
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlve....le 32
                 +d +v+G+G AGl+aa  la+ag++++++      +
   CDO68875.1 50 YDAIVVGAGGAGLRAAFGLAEAGFNTACITklfpTR 85
                 5789*************************5554433 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.8
                  -TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 261 deflrtnvpgiyaiGDva 278
                  +++    vpg+ya+G  a
   CDO68875.1 347 KDKV---VPGLYAAGEAA 361
                  4444...9*******988 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.6e-06    0.0042       2      37 ..      50      85 ..      49      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.6e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37
                   +d ++VGaG aGl +a  L+eaG ++ +++k   t 
     CDO68875.1 50 YDAIVVGAGGAGLRAAFGLAEAGFNTACITKLFPTR 85
                   7899**************************986554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.1e-05     0.051       1     144 [.      51     189 ..      51     208 .. 0.81
   2 ?   -3.2   0.1       1.9   3.2e+03      60      91 ..     522     554 ..     514     558 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdefedlgaleecvehsWsgtivylddgkkillg.raYgrvsskrlkeell 94 
                    D +v+GaG Agl+ A  l  a++g +  +i    +l fp +  +   ++    al ++ e  W+ ++    +g+  l +  a + + ++  + +++
     CDO68875.1  51 DAIVVGAGGAGLRAAFGL--AEAGFNTACI---TKL-FPTRShTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDqDAIHYMCREAPRTVIE 140
                    789***************..9*********...555.66665355555544445**********99999999998888866778888999999998 PP

  Lycopene_cycl  95 erlvengvklleakvesveeeea.geslvvleggrkirarlvvdarglasl 144
                     +    gv + + k  ++ +  + g+sl + +gg+  r+ ++ d +g a l
     CDO68875.1 141 LEHF--GVPFSRTKDGKIYQRAFgGQSLKYGKGGQAYRCAAAADRTGHALL 189
                    8888..999999999999999998999999999999999999999995544 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  Lycopene_cycl  60 hsWsgtivylddg.kkillgraYgrvsskrlke 91 
                      W ++++  + + ++ +++++Y+rv s+ l e
     CDO68875.1 522 ENWMKHTLTWQRNvESPDVDLKYRRVISETLDE 554
                    567777777665515568899******999976 PP

>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.3e-05     0.054     173     258 ..     441     532 ..     431     545 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.3e-05
                 ...........S-HHHHHHHHHHHHHHHT-..S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH.................... CS
     TAL_FSA 173 k....dklkgkddgvalvkeiynyykklgy..sTkvmaasfrnveeveelagcdtvTippkllealakhgktsekleeeeieklleklfrlg 258
                      +++++ d+gv+ +++iy+ y+++g+     + + ++ ++ e  +l+ c + Ti+++  ++ +     +e  +e++ e+ ++++  ++
  CDO68875.1 441 DaavfRTQESLDEGVKKIRDIYKTYEQVGIkdRSMIWNSDLIETLELRNLLQCAIQTITAAANRKESRGAHAREDYPERDDENWMKHTLTWQ 532
                 234577778899****************765566777888*********9999999999888776665544445666665555555555555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.4   7.8e-05      0.13       1      70 [.      51     140 ..      51     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.8e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH...................HHHHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas...................elarlslealeelre 70 
                 d +++G+G +Gl +A+ La++g  ++ + k  ++ +  + +++g + ++l +  e                     +++ +++ea +   e
  CDO68875.1  51 DAIVVGAGGAGLRAAFGLAEAGfnTACITKL-FPTRSHTVAAQGGINAALGNMTEDDwrwhmydtvkgsdwlgdqdAIHYMCREAPRTVIE 140
                 789**************************99.88888888888888888843433312333333334444444444444444444444433 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.6   0.00023      0.37       2      31 ..      51      80 ..      50     106 .. 0.83
   2 ?   -0.9   0.0      0.31     5e+02     150     165 ..     232     247 ..     163     257 .. 0.81
   3 ?   -2.1   0.0      0.73   1.2e+03     373     384 ..     349     360 ..     347     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00023
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 d iv+G+G AGl aA  +a++g +++ + k
   CDO68875.1 51 DAIVVGAGGAGLRAAFGLAEAGFNTACITK 80
                 89*******************998887765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.31
                  TEEEEESEEEE----S CS
  HI0933_like 150 eeeleadklvlAtGGl 165
                   ++++a+k+vlAtGG 
   CDO68875.1 232 LHRFRAHKTVLATGGY 247
                  457899********96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.73
                  TTSTTEEE-GGG CS
  HI0933_like 373 kkvpgLffaGEv 384
                  k vpgL+ aGE 
   CDO68875.1 349 KVVPGLYAAGEA 360
                  789*******95 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.3    0.0015       2.4       1      26 [.      53      78 ..      53      81 .. 0.90
   2 ?   -0.5   0.0      0.36   5.9e+02     122     139 ..     234     251 ..     229     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0015
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledyli 26
                 i++GaG aGl aa  l +ag+++ +i
   CDO68875.1 53 IVVGAGGAGLRAAFGLAEAGFNTACI 78
                 89******************976655 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.36
  Pyr_redox_3 122 tyeAkkviiAtGefdkPn 139
                   ++A+k ++AtG +++ +
   CDO68875.1 234 RFRAHKTVLATGGYGRAY 251
                  689***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3923.72
//
Query:       CDO68876.1  [L=730]
Description: hypothetical protein BN946_scf185000.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-28  100.4   0.0    1.1e-14   54.7   0.0    2.2  2  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
        3.8    8.3   5.5         16    6.3   5.5    2.1  1  LCE6A       Late cornified envelope protein 6A family


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.2e-18   1.1e-14      47     106 ..      58     116 ..      34     155 .. 0.88
   2 !   43.5   0.0   3.2e-15   2.9e-11     140     212 ..     203     277 ..     192     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.2e-18
  RabGAP-TBC  47 lsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivaplllvsld 106
                  ++I +Dv+rtfp+ ++f+++++q +L++iL+ ys+ +p++gY qGm+ ++apl+ +  d
  CDO68876.1  58 RKTILQDVERTFPDIAYFRDAEVQAELTNILFLYSVMHPDIGYRQGMHELLAPLY-YAVD 116
                 57999********77***************************************9.4433 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.2e-15
  RabGAP-TBC 140 vleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfvllr.valailkllee 212
                 v    lk +dp+l+k +++ g++++++ i+w+  lf+ref+++ ++ lwD l++  ++f l   +++a+l + ++
  CDO68876.1 203 VQSVFLKGVDPELWKAMQSAGIEPQIYGIRWLRLLFTREFNMQDAMVLWDgLFAIDPSFDLALwICVAMLVRIRN 277
                 55567899******************************************9999778888877799999987776 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.5    0.0018        16       5      49 ..     592     636 ..     589     652 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0018
       LCE6A   5 kqqsselpnapkcspPkrknpslapcsapCgascsgGCsstsqrp 49 
                 + q + +p+ap  spP  + p++ap++a+ +++     +s +  p
  CDO68876.1 592 RSQDYFPPQAPGTSPPGARLPAPAPIPASLSSPRNPSLHSHASAP 636
                 789999***********************9998876666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4873.13
//
Query:       CDO68877.1  [L=152]
Description: hypothetical protein BN946_scf185000.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-28   98.5   0.6    4.1e-28   98.2   0.6    1.1  1  Cullin_binding  Cullin binding
  ------ inclusion threshold ------
      0.036   14.3   0.0      0.051   13.8   0.0    1.3  1  MSV199          MSV199 domain


Domain annotation for each model (and alignments):
>> Cullin_binding  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.6   4.6e-32   4.1e-28      13     120 .]      37     136 ..      27     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 4.6e-32
  Cullin_binding  13 lsdkekfkkvYeftFelakeegqksldletaielwklllkekeatkkeelleqwieFleeekkekkaiskDtWnqlleFakkvkededlskYdee 107
                     ++++++f ++Y+f+F+lak ++ +++d+eta+++w++l++  +   k +++++ ++F+ ++  + k+++kD+Wn++leF+++v+   dls+Y+++
      CDO68877.1  37 ANKDKTFLELYTFCFNLAKPPAGRNIDIETACAFWSVLVA--P---KYPIMNDILKFIADKG-TYKGVNKDLWNMTLEFCRTVHP--DLSNYETD 123
                     345577*********************************6..3...458*********8885.77****************9976..7******* PP

  Cullin_binding 108 gAWPvliDeFvey 120
                     gAWP+++D+Fv++
      CDO68877.1 124 GAWPTMLDDFVAW 136
                     ***********99 PP

>> MSV199  MSV199 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.7e-06     0.051      11      57 ..      61     105 ..      57     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-06
      MSV199  11 nyeldlliswFwqplvdkkdvlitneiLeflgyeGeykkqkkkfkkl 57 
                 n++++     Fw +lv  k   i n+iL+f+  +G+yk   k++ ++
  CDO68877.1  61 NIDIE-TACAFWSVLVAPKY-PIMNDILKFIADKGTYKGVNKDLWNM 105
                 78888.7889******9875.6889***************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1072.41
//
Query:       CDO68878.1  [L=647]
Description: hypothetical protein BN946_scf185000.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-14   52.4   0.0      9e-14   51.6   0.0    1.3  1  DUF659         Protein of unknown function (DUF 659)
    4.4e-10   39.2   0.0    9.5e-10   38.1   0.0    1.5  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.27   11.2   0.0    1.5  1  DUF2603        Protein of unknown function (DUF2603)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.5e-17     9e-14      26     139 ..       7     123 ..       2     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.5e-17
      DUF659  26 kkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkvieevgaen...Vvqvitdnasnykkagklleekyptifw 121
                 k+ ++    ++ +Dgwt +++++l+ f+ + ++ +  ++ +d+s+e+kta    +++++ ++++g++    Vv + +d++ + ++a  +l +kyp +++
  CDO68878.1   7 KERTTGVEATLQADGWTGINNHHLVAFMMNAKREIHTVRVLDTSTERKTAPVFLKHIEETLQSLGEDWkvvVVAFTSDASGESRAARIALLKKYPWLIV 105
                 666777788*********************************************************988888899999999999*************** PP

      DUF659 122 tpcaahclnlmledilkl 139
                   c+ah++nl++ d lk+
  CDO68878.1 106 LDCYAHQVNLVVGDYLKC 123
                 *************99985 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.6e-13   9.5e-10       7      80 ..     383     458 ..     375     464 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.6e-13
                    T------TT......--HHHHHH...HTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHH CS
  Dimer_Tnp_hAT   7 eelpvlrrkek..sefdvlewwk...ensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveall 80 
                    ++l+ ++   +  +++d+l+ wk   + +   P l+ la+++Ls+ + sa++Er Fs+ g+ l+++rn++ + ++ al 
     CDO68878.1 383 SKLERAQ---AqnIPIDPLDIWKaagVSGRPEPPLTMLAKRILSVCANSASCERLFSIFGQLLTKQRNRMGSATLTALA 458
                    4433343...23599********997777778******************************************99986 PP

>> DUF2603  Protein of unknown function (DUF2603)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05      0.27      72      98 ..     378     404 ..     371     406 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
     DUF2603  72 eerlelkLEkdilqqiPiDFeDvweVa 98 
                 e++l+ kLE++ +q+iPiD  D+w+ a
  CDO68878.1 378 EDHLKSKLERAQAQNIPIDPLDIWKAA 404
                 7899********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4413.87
//
Query:       CDO68879.1  [L=183]
Description: hypothetical protein BN946_scf185000.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-09   36.5   0.0    6.9e-09   35.8   0.0    1.4  1  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.8e-13   6.9e-09       2      74 .]      56     135 ..      55     135 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.8e-13
                     HHHHHHHTT-B-TTTS.SBCCCCT---E..EEE-T...-EEEEEE--SSTT-TTHHHHHHHHHHHHC..STT--EEEEEE CS
  FeS_assembly_P   2 eavlaaLrtVtDPelg.vdlvslglvre..idieg...gkVsvditltypacslaeairadaeaalr.alpgvevveVev 74 
                     +++++ +r++ DPe+   +l +l +v++  i+ +    ++++v +t+t p+c + + i  +++  l  +lp +++v + v
      CDO68879.1  56 DEIFELIRSISDPEHRsMTLEQLAVVSApqITFDPrhrDRITVEFTPTVPHCGMSTFIGLSIRVRLLrSLPQRFKVDIRV 135
                     79**************9***********8899999******************************999****99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1305.12
//
Query:       CDO68880.1  [L=242]
Description: hypothetical protein BN946_scf185000.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1612.96
//
Query:       CDO68881.1  [L=693]
Description: hypothetical protein BN946_scf185000.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-104  347.2   0.0   1.4e-103  346.0   0.0    1.6  1  Dynamin_M  Dynamin central region
    2.9e-55  186.9   0.0      6e-55  185.8   0.0    1.6  1  Dynamin_N  Dynamin family
    4.9e-28   97.1   5.3    4.9e-28   97.1   5.3    2.0  2  GED        Dynamin GTPase effector domain
    2.9e-05   24.1   0.1    0.00021   21.3   0.1    2.4  2  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.37   10.4   3.2        8.6    6.0   0.0    2.7  3  AAA_15     AAA ATPase domain


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.0   0.0  3.9e-107  1.4e-103       1     284 [.     243     528 ..     243     529 .. 0.98

  Alignments for each domain:
  == domain 1  score: 346.0 bits;  conditional E-value: 3.9e-107
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 vvdil+++vipL+lGYv VvnR+q+dI+++k+i++al+ E++FFe+hp+y + a+++Gtp+La+kLn iL+ hIr +lP++k +i+++lqk+++el++l
  CDO68881.1 243 VVDILAGRVIPLRLGYVPVVNRGQRDIENNKPISAALEYERKFFETHPSYANKAQYCGTPFLARKLNAILMAHIRATLPDIKGRISQQLQKYNAELQTL 341
                 79************************************************************************************************* PP

   Dynamin_M 100 geskpsdeektklllqlitkfkedfkklieGese.vstkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFealvk 197
                 g    +  +  +++l++it+f+++f+++i+G+++ +s +elsggari+ +F+e +++ +++idp+++++d +irt+++ns+G++++lfv ++aFe++vk
  CDO68881.1 342 GGALGD--NSANIVLSVITEFCSEFRTTIDGNTNdLSLNELSGGARISFVFHELFNQGIKTIDPFDQVKDGDIRTILYNSSGSTPSLFVGTQAFEIIVK 438
                 *87766..89**********************55478************************************************************** PP

   Dynamin_M 198 kqikkleepalkcvelVyeelekivek.lek..elkrFpnLreeikevvedllreqeeptkemienliemelayintnhpdfigalkair 284
                 +qi++le+p+lkc++lVy+el++i+++ l+k  +++rFp+Lre++++vv +++r++++pt++++++l++m+ +y+nt hpdf++++ka++
  CDO68881.1 439 QQIRRLEDPSLKCCQLVYDELIRILNHlLTKiqTFRRFPALRERFNSVVVNFFRNSMQPTTKLVSDLVAMQACYVNTTHPDFLNGHKAMA 528
                 ***************************8888********************************************************985 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   1.7e-58     6e-55       1     168 []      36     234 ..      36     234 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 1.7e-58
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE...............CCT---C.......CS...SSEEEE....T-EB--CHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql...............geeeeas.......eravkeelkek....ekkledfsevreeie 73 
                 i+v+GsqSsGKSSvl++++g+d+lprg++++Trrpl+lql               g     +       ++a+ +e++e+     +k++df+++reei 
  CDO68881.1  36 ICVLGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLihrkpthsqqngtanG-----QdlkadgdSQANPDEWGEFlhlpGQKFYDFNKIREEIV 129
                 89**************************************7776666655555552.....055555767789999***9******************* PP

                 HHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEE CS
   Dynamin_N  74 ketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrti 162
                 + te ++g+n gis  +i+l+i+s++v +ltlvDlPGl++v+++dq         +++ +yi k+++iilavt+an+dl+ns+ l+larevdp+g+rti
  CDO68881.1 130 RDTEAKTGKNAGISPLPINLRIYSPNVLTLTLVDLPGLTKVPVGDQprdiekqirDMLLKYIsKSSCIILAVTAANTDLANSDGLKLAREVDPEGQRTI 228
                 *************************************************************************************************** PP

                 EEEE-C CS
   Dynamin_N 163 vvltkl 168
                 +vltk+
  CDO68881.1 229 GVLTKV 234
                 ****96 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         4   1.4e+04      21      32 ..     180     191 ..     179     194 .. 0.76
   2 !   97.1   5.3   1.4e-31   4.9e-28       2      92 .]     603     693 .]     602     693 .] 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4
                 HHHHHHHHHHHH CS
         GED  21 rktiadqiPkai 32 
                 +k+i+d+  k+i
  CDO68881.1 180 EKQIRDMLLKYI 191
                 678888888887 PP

  == domain 2  score: 97.1 bits;  conditional E-value: 1.4e-31
                 XXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCHH CS
         GED   2 eeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreilsev 92 
                 e +e+e+i+ l++sYfniv++++ d++Pkai+++lvn++ke+lq+ell++Lyk e ldeLLkE+e ++++Rke+ ++++al+kA+ei+++v
  CDO68881.1 603 ELMETEVIKLLIHSYFNIVKREMIDMVPKAITLTLVNHSKENLQRELLQELYKPEVLDELLKESEFVVNRRKEVVSMIQALNKAEEIVASV 693
                 6789***********************************************************************************9986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     6e-08   0.00021       1      91 [.      35     209 ..      35     233 .. 0.76
   2 ?   -3.2   0.0       2.4   8.5e+03      30      59 ..     302     329 ..     294     376 .. 0.52

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6e-08
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................................................... 47 
                 +++++G   +GKS+++  ++g+      +  +Tr +   ++ +++ +                                                    
  CDO68881.1  35 QICVLGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLIHRK-Pthsqqngtangqdlkadgdsqanpdewgeflhlpgqkfydfnkireeivrdt 132
                 589******************999999999999999888776333.235666788889999999999******************************** PP

                 ..........................EEEEECGGCSS......HHHHHHHHHHHHHH.HHCTSEEEEEEETTTTCSH CS
    MMR_HSR1  48 ..........................ielvDtpGlie......gaseekglgkafla.leeadlillvvdaseeklk 91 
                                           ++lvD+pGl +        + ek++++ +l+ + +++ i+l v a++++l+
  CDO68881.1 133 eaktgknagisplpinlriyspnvltLTLVDLPGLTKvpvgdqPRDIEKQIRDMLLKyISKSSCIILAVTAANTDLA 209
                 **********************************8533332222333345555555533347777777776633332 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                 TTSSSSEEEEEEEETTEEEEEEECGGCSSH CS
    MMR_HSR1  30 pgtTrdinegrvklkgkeielvDtpGlieg 59 
                 p+  r+ n + ++  + + +l D+ G i++
  CDO68881.1 302 PFLARKLNAILMA--HIRATLPDIKGRISQ 329
                 5555566666555..455666777775541 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0072        26      26      43 ..      36      53 ..      27      54 .. 0.84
   2 ?    6.0   0.0    0.0024       8.6     216     317 ..     302     438 ..     271     451 .. 0.73
   3 ?   -2.3   0.2      0.78   2.8e+03     190     229 ..     609     649 ..     528     688 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0072
      AAA_15 26 tvliGkNnsGKSsileal 43
                 ++ G ++sGKSs+le +
  CDO68881.1 36 ICVLGSQSSGKSSVLENI 53
                6889***********966 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0024
      AAA_15 216 sllgklkekileealqekl...eeelteklkeiqeklkeidkklaeelkkilkkkidkik.kfnykgkkneeieik....................... 287
                 ++l ++++ il+  ++  l   + ++ ++l++ + +l+++ + l+++ ++i+ + i +++  f   +  n ++ ++                       
  CDO68881.1 302 PFLARKLNAILMAHIRATLpdiKGRISQQLQKYNAELQTLGGALGDNSANIVLSVITEFCsEFRTTIDGNTND-LSlnelsggarisfvfhelfnqgik 399
                 5566777777777666666777777788888888888888888888888777777777764444444444333.2335566888888888888888888 PP

      AAA_15 288 .........ddeelplnknGsGvqrllllillileaekk 317
                          d++  ++ +n+sG    l++ ++ +e++ k
  CDO68881.1 400 tidpfdqvkDGDIRTILYNSSGSTPSLFVGTQAFEIIVK 438
                 888888888999999999999999888888888888888 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.78
      AAA_15 190 lksaiiklllisakRnvsd.edsekkssllgklkekileea 229
                   +++i ++++  kR+  d   +  + +l +  ke++ +e 
  CDO68881.1 609 VIKLLIHSYFNIVKREMIDmVPKAITLTLVNHSKENLQREL 649
                 33333333333333333332222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 4209.09
//
Query:       CDO68882.1  [L=167]
Description: hypothetical protein BN946_scf185000.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   13.7   0.3      0.073   13.3   0.3    1.2  1  CAF1A     Chromatin assembly factor 1 subunit A


Domain annotation for each model (and alignments):
>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   4.1e-06     0.073      30      64 ..      90     121 ..      73     130 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-06
       CAF1A  30 fskdekeldYdyDSdaEWeeeeeeeg.edleseede 64 
                 +++  ++ +YdyDSd + ee     g ++l++e+  
  CDO68882.1  90 IRQYALPGEYDYDSDSDLEE----AGfDNLDEEDSM 121
                 45666677899999999844....344888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1187.90
//
Query:       CDO68883.1  [L=186]
Description: hypothetical protein BN946_scf185000.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   13.9   0.1      0.025   13.6   0.1    1.1  1  GHL13     Hypothetical glycosyl hydrolase family 13


Domain annotation for each model (and alignments):
>> GHL13  Hypothetical glycosyl hydrolase family 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.4e-06     0.025     215     261 ..     105     150 ..      72     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-06
                 -TT-EEEEEEEHHHHHSGGGHHHC---HHHHHHH-SEEEEE-GTTTT CS
       GHL13 215 kpelktaRnlyaevvlnpeseawfaqnledflkaYDltaimamPyme 261
                  ++ ktaRnlya++ ++++ ++  aq+++++ ka D +++     m 
  CDO68883.1 105 LTKHKTARNLYAHAFIEEN-DTISAQDFDRIYKALDPAVMQEYHAMH 150
                 56779**********9875.7889************98876544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.55
# Mc/sec: 1024.87
//
Query:       CDO68884.1  [L=694]
Description: hypothetical protein BN946_scf185000.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   13.9   0.0        1.2    8.1   0.0    2.7  2  Med1      Mediator of RNA polymerase II transcription subunit


Domain annotation for each model (and alignments):
>> Med1  Mediator of RNA polymerase II transcription subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0    0.0031        56     106     140 ..     237     274 ..     128     290 .. 0.72
   2 ?    8.1   0.0   6.8e-05       1.2     375     413 ..     509     548 ..     485     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0031
        Med1 106 aanLerLarlDklsgd...pklncfealegleesLqkl 140
                 + +L +L++lD+l+      +l  f ++ ++  +++kl
  CDO68884.1 237 SNHLAYLMKLDHLALSegdGGLRWFNFIDRMSLDIEKL 274
                 46899999999998777888999999999999999998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 6.8e-05
        Med1 375 lpgl.gitvkelpFshPrqlpeiLpiLRqyallstLlrsc 413
                  p++ g  ++ +p   ++++  iL+i R + +l+  lrsc
  CDO68884.1 509 TPDEpGFILEAVPVRTLKEVWGILEIVREQCWLNETLRSC 548
                 6777788*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4561.10
//
Query:       CDO68885.1  [L=146]
Description: Glycoside Hydrolase Family 88 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1072.97
//
Query:       CDO68886.1  [L=190]
Description: Glycoside Hydrolase Family 88 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-09   37.6   0.5      2e-09   37.0   0.5    1.2  1  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.5   1.1e-13     2e-09     166     264 ..      17     109 ..       5     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.1e-13
                     BETTTSEB-SEEETTTTSTTS.--BHHHHHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH.HHHHCTS-TTSS....EBSBTT-TTTTSSBEHH CS
  Glyco_hydro_88 166 fdpetGlyyhgwdesgtedwakefWaRgngWalaglaevlelLpekekarqelinllrdlv.kalaklqdeegl....WhqilddgskesylEtS 255
                     ++ +tG   +  + +g+ dw++  W+Rg++W ++g+a++++     ++ + ++ ++ r+++ + +++ ++ +g+    ++++ld++     +++S
      CDO68886.1  17 YNSTTGAVIRQRTSQGYADWST--WSRGEAWGIYGFANMYK-----HTRKFDYLQTARKMAkYWITNTPS-DGIipwdFNAPLDPPR---PADSS 100
                     7999******************..****************6.....666677777888887566777776.5554544789999999...55555 PP

                     HHHHHHHHH CS
  Glyco_hydro_88 256 atalfvygL 264
                     a  +++ gL
      CDO68886.1 101 AATIAANGL 109
                     555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1312.94
//
Query:       CDO68887.1  [L=446]
Description: hypothetical protein BN946_scf185000.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-17   62.8   0.0    9.5e-17   61.2   0.0    1.7  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   5.3e-21   9.5e-17       4     291 ..     114     400 ..     111     402 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 5.3e-21
                   S--EEEEEEETSSS.-BGGGHHHHHHHHHHHH.TTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHH CS
  tRNA-synt_1b   4 rplrvysGidPTgk.lHlGylvplkklvelqk.aghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehle 98 
                   +p+ +y+G  P+++ +HlG++vp+    +lq+   + +++ + D + ++ +++  ++++  + +++ +     ++a+g+++ek+ ++  ++      
    CDO68887.1 114 KPFFLYTGRGPSSDsMHLGHMVPFVFTKWLQDvFDVPLVVQLTDDEKFLFKHE-LKPEQTYEFAKRNARD---IIAVGFKLEKTFIFSDYDFVGG-- 204
                   78899**************************8667788888999999999999.4566666666666666...9*****************9986.. PP

                   HHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHS...........EEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-E CS
  tRNA-synt_1b  99 laellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkad...........lvpgGsDQkqnielgrdlarrfnkkevfkkpe 184
                      + r+++k+ +  ++ q+k+    +  +++ ++g + +   qaa ++                l p   DQ+  ++l+rd+a ++++     kp 
    CDO68887.1 205 --PFYRNVSKISRQITINQAKA---TFGFNDSDNIGKIHFASIQAAPSFSNSFPqifgtasnipcLIPCAIDQDPYFRLTRDVAVKLKYP----KPA 292
                   ..57788888888888888888...5555445599***********988433336899999**************************887....*** PP

                   EEEET-BBSTTSSS.BTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTC...SHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHH CS
  tRNA-synt_1b 185 gltvplltgldGek.KmSKSagnsaIfLddekesvkkkiqkavtdsde...evekllklktelsnelierleavsgkkpkreaeellaeevtklvhg 277
                    l  ++ + l+G + KmS S+ ns I+++d ++++k ki+k   + ++   e ++ l +++ ++   +++l  +++ ++  e +++ +e++ +++  
    CDO68887.1 293 LLHAKFFPALQGPQtKMSASDVNSSIYMTDTPAQIKNKINKHGFSGGQetvEEHRRLGGNPDVDV-AYQYLGFFMDDDE--EWKKMGEEYRAGRLLT 386
                   ***********9888*************************9866666658888999999999999.9999999999998..**************** PP

                   HHHHHHHHHHHHHH CS
  tRNA-synt_1b 278 gdlkkalaealnel 291
                   g+lk +  ++l+ +
    CDO68887.1 387 GELKAKCIKVLQDF 400
                   ****9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2885.04
//
Query:       CDO68888.1  [L=308]
Description: hypothetical protein BN946_scf185000.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-66  219.2   0.2      3e-32  110.4   0.0    2.2  2  TBP       Transcription factor TFIID (or TATA-binding protein
  ------ inclusion threshold ------
       0.03   14.4   8.8       0.39   10.9   0.0    3.0  4  DUF3378   Domain of unknown function (DUF3378)
       0.09   12.4  16.1       0.13   11.8  16.1    1.2  1  Spt20     Spt20 family
       0.12   12.2   0.0       0.33   10.8   0.0    1.8  2  DUF4295   Domain of unknown function (DUF4295)
        1.5    7.9  14.8        1.9    7.6  14.8    1.1  1  SOG2      RAM signalling pathway protein
          2    8.3  13.9        2.7    7.9  13.9    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> TBP  Transcription factor TFIID (or TATA-binding protein, TBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0     1e-35     3e-32       3      84 ..     134     213 ..     132     214 .. 0.97
   2 !  107.1   0.0   1.1e-34   3.2e-31       1      84 [.     222     304 ..     222     305 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1e-35
                 EEEEEEEEEE-SSCE-HHHHHHHCCTTTEEE-TTTSSSEEEEETTTTEEEEE-TTSEEEEECESSHHHHHHHHHHHHHHHHH CS
         TBP   3 kiqNvvasanlgleldLeklalkaekrnaeYeperfpglvyrlrepkvtaliFssGkvvitGakseeelreaakkiapilkk 84 
                 + qN+va++nl+++ldL+++al+a  rnaeY+p+rf ++++r+r+pk+taliF+sGk+v+tGakse+++r a +k+a+i++k
  CDO68888.1 134 TLQNIVATVNLDCRLDLKTIALHA--RNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQK 213
                 78*******************998..******************************************************98 PP

  == domain 2  score: 107.1 bits;  conditional E-value: 1.1e-34
                 EEEEEEEEEEEE-SSCE-HHHHHHHCCTTTEEE-TTTSSSEEEEETTTTEEEEE-TTSEEEEECESSHHHHHHHHHHHHHHHHH CS
         TBP   1 dfkiqNvvasanlgleldLeklalkaekrnaeYeperfpglvyrlrepkvtaliFssGkvvitGakseeelreaakkiapilkk 84 
                 +fkiqN+v+s++++++++Le+la++ + ++++Yepe fpgl+yr+ +pkv++liF+sGk+v+tGak +ee+++a+++i+ +l +
  CDO68888.1 222 EFKIQNIVGSCDVKFPIRLEGLAYS-HGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCE 304
                 59********************999.79****************************************************9976 PP

>> DUF3378  Domain of unknown function (DUF3378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       2.7   8.1e+03      19      37 ..      22      40 ..      19      51 .. 0.58
   2 ?   -4.3   1.6         6   1.8e+04      60      72 ..      76      88 ..      70      92 .. 0.47
   3 ?   10.9   0.0   0.00013      0.39      27      60 ..     167     200 ..     149     213 .. 0.86
   4 ?    8.6   0.0   0.00067         2      24      57 ..     255     288 ..     248     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.7
     DUF3378 19 ksklrskkppyavfaakkn 37
                +++++s+  py   + +++
  CDO68888.1 22 QQYQQSQPQPYGQSQTQQA 40
                4555556666666555555 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 6
     DUF3378 60 Askwgeeeakkkk 72
                A++ ++++ ++++
  CDO68888.1 76 AQQQQQSKRSQQQ 88
                3333344444443 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00013
     DUF3378  27 ppyavfaakkndttItaYtSgKVlFQGknaeaeA 60 
                    +++++++++tt  ++ SgK ++ G++ e ++
  CDO68888.1 167 FAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDS 200
                 556899**********************999765 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00067
     DUF3378  24 skkppyavfaakkndttItaYtSgKVlFQGknae 57 
                  +  p+ +++  k++++  ++ SgK+++ G++  
  CDO68888.1 255 PELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVR 288
                 55689***********************998765 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  16.1   4.5e-05      0.13     109     171 ..      20     115 ..       7     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
       Spt20 109 qsqqnqqqqqqqqqqqqqqqq.................................qqeqqqqqnekdsttteekekksksknnssksktttkkpkvy 171
                 qsqq qq+q+q++ q+q+qq+                                 q+ qqqqq++  +++++++     s+ n++ s  +t++p ++
  CDO68888.1  20 QSQQYQQSQPQPYGQSQTQQAnglalpyssnqylpgpsnlalpgpsapsyssqpQAAQQQQQSKRSQQQSQSQTVVGSSQPNAGPSTPPTTIPATP 115
                 333445555555555555555678888888999*******************9989999999999999999999999****************976 PP

>> DUF4295  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.33       4      36 ..     152     186 ..     151     198 .. 0.79
   2 ?   -2.1   0.0       1.2   3.6e+03      13      22 ..     203     212 ..     186     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     DUF4295   4 vVAtlkkga..sgkkytKvIkmvKspKTGaYtFkE 36 
                 ++A  + +a  + k+++ vI  +++pKT a +F  
  CDO68888.1 152 TIALHARNAeyNPKRFAAVIMRIRDPKTTALIFAS 186
                 5555555544588******************9964 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
     DUF4295  13 sgkkytKvIk 22 
                  ++ky+++++
  CDO68888.1 203 ASRKYARIVQ 212
                 4678888775 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  14.8   0.00065       1.9     232     376 ..       5     142 ..       1     148 [. 0.64

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00065
        SOG2 232 lrsdqipfnlsrsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastp 330
                 l+s+q++f+  ++ ++s++ ++++p++ g++++ ++ ++  +   ss +  P+ ++   p g ++ +  s++++ +++++s++s+++s+s+t + +s+p
  CDO68888.1   5 LPSRQVTFARPAVPTQSQQYQQSQPQPYGQSQT-QQ-ANGLALPYSSNQYLPGPSNLALP-GPSAPSYSSQPQAAQQQQQSKRSQQQSQSQTVVGSSQP 100
                 567788887778888888888888888877333.22.33333344455555666655555.66667777788888889999999999999999999999 PP

        SOG2 331 rslattpappasaesfastltasrintlaavDeqlletletavkla 376
                 +  ++tp+++  a+ ++    + + +  +av   ++ tl+++v ++
  CDO68888.1 101 NAGPSTPPTTIPATPAPL---TLEQQHITAVE-GIVPTLQNIVATV 142
                 999999984444444322...22222233332.5667777776665 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  13.9    0.0009       2.7     155     221 ..      21      97 ..       4     177 .. 0.44

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0009
       TFIIA 155 aaqplqqvvqq.sqgsaaqssvaalqaqsqqaqalaepqqqlekq...................qqqqqqqqqqqqqq.qvqqqqqe...e 221
                  +q +q++ q  +q++            +qqa++la+p +   +q                    q+q  qqqqq ++ q+q+q+q    +
  CDO68888.1  21 SQQYQQSQPQPyGQSQ------------TQQANGLALPYSS--NQylpgpsnlalpgpsapsysSQPQAAQQQQQSKRsQQQSQSQTvvgS 97 
                 1111111111122222............2222222222222..112223333333333332222111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 1930.75
//
Query:       CDO68889.1  [L=332]
Description: hypothetical protein BN946_scf185000.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   14.0   0.1      0.079   13.1   0.1    1.4  1  SLT_L     Soluble lytic murein transglycosylase L domain


Domain annotation for each model (and alignments):
>> SLT_L  Soluble lytic murein transglycosylase L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.4e-06     0.079       9      65 ..      46     102 ..      40     103 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-06
       SLT_L   9 arirELralgrdaeArreWrhllkrlskeeqlalakyAkdqgWhdlaveatiqakaW 65 
                 +ri  L +l + +e +++W+h +    +e   a ++ A +q+ + +av +++ a+++
  CDO68889.1  46 KRIITLTYLRNVHEGKSHWFHTILITRAELDRAFTNAAMKQRTYRFAVLGMALANQF 102
                 799*************************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2336.95
//
Query:       CDO68890.1  [L=410]
Description: hypothetical protein BN946_scf185000.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-28  100.2   0.0    2.2e-28   99.2   0.0    1.4  1  NTF2             Nuclear transport factor 2 (NTF2) domain
    2.7e-22   79.3   0.0    5.2e-22   78.3   0.0    1.5  1  Lysine_decarbox  Possible lysine decarboxylase
    1.4e-06   28.0   1.3    4.4e-06   26.4   1.9    1.6  2  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   3.7e-32   2.2e-28       1     114 [.       7     115 ..       7     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 3.7e-32
                 HHHHHHHHHHHHHHHHGGGGGGGGEEEEEEEEEETTEEEEESHHHHHHHHHHSSCSCEEEEEEEEEEEETSEGGGCEEEEEEEEEEEETTSCCEEEEEE CS
        NTF2   1 vakafvqqYYaaldagdregllalyaadaslltpegsspvkgreaIteffrslpftrielkittvdaqpdeaslstgvlvmvtGelkvddfkkrrkfsq 99 
                 +ak+f+  YY+++d+ +r gl  ly +d s+lt+eg  p+ g+++I+e++++lpf+++++kitt+daqp+ +++  ++lv+vtG l vdd  ++++fsq
  CDO68890.1   7 IAKQFTDFYYTTFDT-NRAGLQSLY-RDSSMLTWEGT-PILGAANISEKLTTLPFEKVQHKITTLDAQPS-SPTVASLLVSVTGLLVVDDSTNPLQFSQ 101
                 689************.99*******.***********.******************************96.577899***************99***** PP

                 EEEEEEETTTEEEEE CS
        NTF2 100 tfilapqsnkgyfvl 114
                 +f l p+s ++y+v+
  CDO68890.1 102 VFQLIPDS-GSYYVA 115
                 *******9.9**995 PP

>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   8.7e-26   5.2e-22       1     127 [.     220     363 ..     220     367 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 8.7e-26
                      HHHHHHHHHHTTS-EEEEEECCHHHHHCC..............TTT-SEEEEESSHHHHHHHHHHHESEEEE-S-SHHHHH....HHHHHHHHH CS
  Lysine_decarbox   1 meavakgaleaggrviGiipkillaeeap..............neevnelvivedmeeRkealveladafvilPGGiGTle....Elleiltli 76 
                      m+av+ ++le+gg v+G++p +++a+  +              +e+  e v+v++m+eRk+ +++++ +f+ lPGG+         +le+ +++
       CDO68890.1 220 MGAVSGAVLEHGGDVTGVTPYAMVAAGGEvdqskgihkphiqlKEKGREKVVVNSMHERKAEMAKRSCGFIGLPGGYAPSRlpsiQVLEVACWS 313
                      99********************999776678999***9999998888899***************************8754333479******* PP

                      HTTSS-S.EEEEEEGGGCCHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHH CS
  Lysine_decarbox  77 qlgkhqkvPiillnpkgyydkllefletlveegtisekareliivvddpee 127
                      q+g+h k P+i+ln++g++d+l e++++ v eg+i  k+ +l+++vd p +
       CDO68890.1 314 QVGIHSK-PVIVLNVRGFWDPLRELIRNGVREGFIIGKNEKLVRFVDGPVD 363
                      *******.**************************************98876 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   1.9   7.3e-10   4.4e-06       4      66 ..     178     241 ..     175     276 .. 0.85
   2 ?   -3.6   0.0       1.2   7.1e+03     120     139 ..     319     340 ..     318     345 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 7.3e-10
  LDcluster4   4 igVmGsaeteakeealelaeelGrliAkegavlltGgrt.GvmeaaskGakeagGltvGilpas 66 
                 ++V+  ++t++++  l+ a+ lG+++A+++  l+ Gg + G+m a+s ++ e+gG + G++p +
  CDO68890.1 178 VAVFCGSSTGTHPAFLKAAQSLGKALAEAKRPLVYGGGSaGIMGAVSGAVLEHGGDVTGVTPYA 241
                 556544444688889*********************9988*********************975 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.2
  LDcluster4 120 gkpvivlkgt..dellseiiek 139
                 +kpvivl+    ++ l+e+i++
  CDO68890.1 319 SKPVIVLNVRgfWDPLRELIRN 340
                 6999999966888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2861.02
//
Query:       CDO68891.1  [L=464]
Description: hypothetical protein BN946_scf185000.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.50
# Mc/sec: 2801.54
//
Query:       CDO68892.1  [L=1300]
Description: hypothetical protein BN946_scf185000.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-34  119.0   9.4    1.5e-34  119.0   9.4    2.3  3  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
      7e-15   54.2   1.7    1.1e-14   53.6   1.7    1.1  1  Patched         Patched family


Domain annotation for each model (and alignments):
>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.79   7.1e+03      69      93 ..     144     168 ..     140     176 .. 0.78
   2 !  119.0   9.4   1.7e-38   1.5e-34       1     144 [.     317     460 ..     317     468 .. 0.95
   3 ?   -2.7   0.0      0.51   4.6e+03      46      89 ..     707     747 ..     706     753 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.79
                     CHHHHHHHHHHHHCCCCHHCCCHHH CS
  Sterol-sensing  69 deseriaealgevgpsilltsltel 93 
                     + + ri eal   g+ +l t    +
      CDO68892.1 144 KLERRITEALAARGIPCLHTRQRTC 168
                     5689**********99998876555 PP

  == domain 2  score: 119.0 bits;  conditional E-value: 1.7e-38
                     HHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHH CS
  Sterol-sensing   1 lvkskfgLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrsldeseriaealgevgpsilltsltella 95 
                     +v+s++gL+++g++ +l+s++ s++++a++g ++t++++e++P +vl++gv+n+  +v av +ts sl+++eria++l+++g+s +l  +   ++
      CDO68892.1 317 MVHSRIGLAFTGIVEILVSTITSVSVCALVGFRVTMVPWELFPIIVLFIGVENMGSIVDAVAKTSISLSVKERIAQGLSRAGTSNTLKVVAYNAV 411
                     79********************************************************************************************* PP

                     HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTX CS
  Sterol-sensing  96 lllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreeser 144
                     l + a+ +  a+++Fc f++v ++  ++l  tfFv+v s+di+r e ++
      CDO68892.1 412 LGVIAALSTGAIRQFCAFSIVVLVAHWFLVHTFFVTVVSIDIQRLELDE 460
                     *966688999**********************************95544 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.51
                     HHHHCHHCCHHCHHHHHHHHTTTCHHHHHHHHHHHHCCCCHHCC CS
  Sterol-sensing  46 vlavgvdnifvlvkavqrtsrsldeseriaealgevgpsillts 89 
                     +  vg+ n fv+ ++ ++++ s d    +   lg++++  ++++
      CDO68892.1 707 IATVGLQNEFVIWRTDTQSHVSVD---TLNSFLGNASTPSTSST 747
                     567999999999877655555544...44455555555554444 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   1.7   1.2e-18   1.1e-14     151     384 ..     223     453 ..     193     512 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.2e-18
     Patched 151 egtlksakaivlqyflkldeeeveelskeyerelekllkdkyasehievsilhsqiledelqrnaktllpflvvtiaiLlvfsiivsvvlssdalkidw 249
                  ++++ a+ +vl+yf   +e   +e   ++ ++le+   +  +     v +   + ++ e q+n        +++++ ++ ++++ ++ ++   +  d+
  CDO68892.1 223 ANQFDGAMFLVLTYFFPEKECFGKEGHFQWLHALEDAGGNVGELI---VLAQEPHLISLEYQKNTSLRSRLSILSLFSFVAYTAFAVYCFRL-FRRMDM 317
                 566777888888888887777888888888888887776665544...66667777777888887766666677888888888888888888.7889** PP

     Patched 250 vrskpilailgvlspvlAivsslGlllwlGfrfnsi.vtvtPFLvLaiGvDdmflmvaawkrteaklsvkkrigealseagvaitiTslTdvlsFgiGa 347
                 v s++ la +g++  ++++++s+ +  ++Gfr   +     P +vL iGv +m  +v a+ +t+ +lsvk+ri++ ls ag + t+  +   +  g+ a
  CDO68892.1 318 VHSRIGLAFTGIVEILVSTITSVSVCALVGFRVTMVpWELFPIIVLFIGVENMGSIVDAVAKTSISLSVKERIAQGLSRAGTSNTLKVVAYNAVLGVIA 416
                 ********************************98873689*******************************************9999998888888888 PP

     Patched 348 ittlpaiqlFciytavailfdfiYqitffaavlaiaa 384
                    + ai  Fc++  v ++  ++   tff  v++i  
  CDO68892.1 417 ALSTGAIRQFCAFSIVVLVAHWFLVHTFFVTVVSIDI 453
                 88999***************************99853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 8227.43
//
Query:       CDO68893.1  [L=318]
Description: hypothetical protein BN946_scf185000.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-20   70.6   0.2    1.4e-19   69.7   0.2    1.5  1  Biotin_lipoyl  Biotin-requiring enzyme
    2.3e-07   31.0   0.0    6.4e-07   29.6   0.0    1.8  1  E3_binding     e3 binding domain
  ------ inclusion threshold ------
      0.077   13.0   0.0       0.12   12.4   0.0    1.3  1  PID            Phosphotyrosine interaction domain (PTB/PID)
        3.4    8.1   6.6       0.31   11.5   1.0    2.0  2  CCDC53         Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.2   3.1e-23   1.4e-19       2      72 ..      32     104 ..      31     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 3.1e-23
                    EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEE.E-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdt.vevgdllak 72 
                    ++ +P+++++++eg ++++++k+G++ +ag+vl+e+e++K+++++ea+++G+v +il+++G++ + vg  +a 
     CDO68893.1  32 KFAMPAMSPTMTEGgIASWKKKEGESFAAGDVLLEIETDKATIDVEAQDDGIVGKILAPDGTKnIPVGNTIAL 104
                    689***********************************************************99*****9986 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.4e-10   6.4e-07       4      36 .]     174     209 ..     171     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.4e-10
                 -HHHHHHHHHCT-...-TTTS---CTTTBE-HHHHC CS
  E3_binding   4 sPaaRklAkelGi...dLsdvkGtGpgGRItkeDVl 36 
                  P++ +l++e+ i   +++++ GtG +G +tk+DVl
  CDO68893.1 174 FPSVLRLIQEHHIppeEIEQIRGTGVRGMLTKGDVL 209
                 5************555555666*************7 PP

>> PID  Phosphotyrosine interaction domain (PTB/PID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-05      0.12      21      71 ..      21      80 ..       7      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
                HHHHHHHHHHHHHHHH.........CCCSTCEEEEECCECEEEEEEEETTEEEEEETTTT CS
         PID 21 tRmqvareaisrvkaa.........klkkikkkegetqegtevdLeistdklkllnadtk 71
                + + +ar+ai + +++          +++ kkkege+++  +v Lei+tdk  +  +++ 
  CDO68893.1 21 MQTTAARNAITKFAMPamsptmtegGIASWKKKEGESFAAGDVLLEIETDKATIDVEAQD 80
                457899*******************9************************9988766655 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   6.8e-05      0.31      51     103 ..     113     165 ..      61     185 .. 0.71
   2 ?   -0.8   0.5      0.42   1.9e+03      30      30 ..     249     249 ..     207     311 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.8e-05
      CCDC53  51 eeveaeaaeastsddnaarkgppppppsseaaaaaaqaeeasqaeesaeeeae 103
                 +++e+ + e + s+  +++k++ppppps++ ++a+++a+ea++++   ++e+ 
  CDO68893.1 113 SNLEVPTDEPAPSQPPSQPKSTPPPPPSASSSSAQPSAAEAKKSPPAPPSESH 165
                 33344444444455557777777777777777777777777776666655543 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.42
      CCDC53  30 l 30 
                 l
  CDO68893.1 249 L 249
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2184.18
//
Query:       CDO68894.1  [L=354]
Description: hypothetical protein BN946_scf185000.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-73  247.7   0.0    1.3e-73  247.5   0.0    1.0  1  Rad1      Repair protein Rad1/Rec1/Rad17


Domain annotation for each model (and alignments):
>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.0   7.1e-78   1.3e-73       1     275 []       8     331 ..       8     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: 247.5 bits;  conditional E-value: 7.1e-78
        Rad1   1 vfsAtlsnvseLatlLksiafkdkalvqissdGlkfivednrvlqaqafldkalFtsYtfenaqdd......edeedeeedsvsfevsLsallecLnif 93 
                 v++A+  +++ +a lL+ ++f+++a+v i++dG++++ve++r+l a+af+ +++F+++ ++++ ++       +++d+e + + fe+ L +l++cLnif
  CDO68894.1   8 VLTASVHDFRYFAALLRGVNFANRASVSITPDGFTVTVEEARCLTATAFVFSHVFDEFVYNPDAARpsqrsqPEDDDDELTATAFEIPLGTLMDCLNIF 106
                 699*********************************************************98888899999977788899******************* PP

        Rad1  94 gkndssskessssraskv...................................asssakatscklsYkgeGsPLvliLee..agvtttcelsTyepeed 155
                 g+++    +s++ ++s+                                      +  k t +++sY g+G+PL+l+  e   g t tce++T +pe  
  CDO68894.1 107 GTAGLAPGTSQKKKKSQAdgddsdggrgsgraggkgkgradaddvsgnarldqWFAPGKGTGMRMSYAGPGHPLTLLVAEesGGPTATCEITTWDPEPR 205
                 ***9977655555555559999****************************9997778899******************99899**************** PP

        Rad1 156 ldleldrqevvlkvilkselLhsalteLdatskklkilassekk.........apvfalsakgelgssevefpneksvlekfevsslsessessYkfal 245
                 l+l +d+++vvlk+ilks++L++al+e+d +++kl+i+ +++            p f+l+a g++gs+e+++pn+++vle+ e+    +++   Ykf++
  CDO68894.1 206 LELAFDSDAVVLKIILKSSWLRDALSEIDPSTEKLTIIGNPPPPpgraarssaPPCFRLKAVGQFGSTEMDYPNDREVLETCECA---HPVAFTYKFSH 301
                 *****************************************85577777777666******************************...999999***** PP

        Rad1 246 lkkaakalalssKvslrmdeaGlLslqfmi 275
                 + +a +al++s K slr+d++GlLslqfm+
  CDO68894.1 302 ITRALRALQSSLKASLRIDDEGLLSLQFMM 331
                 *****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2532.23
//
Query:       CDO68895.1  [L=435]
Description: hypothetical protein BN946_scf185000.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-58  195.1   1.8    9.3e-58  195.0   0.3    1.7  2  Hat1_N          Histone acetyl transferase HAT1 N-terminus
    0.00097   19.4   0.0     0.0027   17.9   0.0    1.8  1  Acetyltransf_1  Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.083   12.5   0.0       0.16   11.6   0.0    1.4  1  MOZ_SAS         MOZ/SAS family


Domain annotation for each model (and alignments):
>> Hat1_N  Histone acetyl transferase HAT1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.3   1.6e-61   9.3e-58       1     160 []      10     191 ..      10     191 .. 0.90
   2 ?   -1.7   0.1      0.49   2.9e+03      56     109 ..     358     417 ..     353     426 .. 0.59

  Alignments for each domain:
  == domain 1  score: 195.0 bits;  conditional E-value: 1.6e-61
                 GEEEHHHHEEEEEESSS.EEE............E--S--HHHHTTTTEEESEES-EEEEEEETTT--EEEEEE-SEE--.STTS-..-HHHHHHTTS-T CS
      Hat1_N   1 wtvdanealkiklvrseedle...eeektksesfhPeftyqiFgeeetIfGYkdLkInlyfaagslkpylkvsyseklkdkskte.kdvekklkeflpe 95 
                 wt+daneal+++lvr+ ed +      ++  e fhP+fty+iFgeee+I+GYkdL+I+l+fa+gsl  yl+v+ysekl  +s+++  d+e++l++f+p+
  CDO68895.1  10 WTSDANEALTLSLVRAPEDKAslwA--REAYEGFHPTFTYPIFGEEEKIYGYKDLSIELKFASGSLVEYLNVKYSEKL--PSSSTvDDIEGTLSKFIPP 104
                 9****************99887542..566788*********************************************..5545546************ PP

                 ..ES-HHHHHHHHHHHH.H--GGSEEEEEETTEE........................EEEEEEESSSHHHHHHHHHHTHHHHHHST CS
      Hat1_N  96 eafkskeeFekaleekaksfkppGelihsytrekke......................feiykasladpavrelhrrlqifvllFIE 160
                  +++++++F +++e++a +fkp+G++i+sytr +++                      fe+y++++++p++re+hrr+q+fvll+IE
  CDO68895.1 105 GYYTDEQKFLERVEQDAINFKPFGQKIYSYTRSATTltkgknvaipqllspedeetvdFEVYHSTWQTPGFREFHRRMQLFVLLYIE 191
                 ******************************9998534445556666667777778888****************************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.49
                 EEEETTT--EEEEEE-SEE--.STTS-......-HHHHHHTTS-T....ES-HHHHHHHHH CS
      Hat1_N  56 lyfaagslkpylkvsyseklkdksktek.....dvekklkeflpeea..fkskeeFekale 109
                 l++a  +++ ++++ + + ++++++ ++     +v++ l++f  e +    +k++ +++le
  CDO68895.1 358 LKIAGRQFNRLVEMLILKHMDPTDERAQrayrlQVKERLYRFNYE-IlmQLDKQDRQQKLE 417
                 666667777777777777776555444347778888888885433.324334444444444 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.5e-07    0.0027      42     104 ..     223     285 ..     162     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.5e-07
                     TEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETT CS
  Acetyltransf_1  42 geliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveed 104
                        +G+ +l++ +  +++ +  i ++ + p y+  G GsaL++a+ ++++      i +l+ve++
      CDO68895.1 223 YHFVGYSTLYPFYCfPERVRLRISQFLILPPYQQDGHGSALYTAIYQHVLGS--PSIaELTVEDP 285
                     3489*********9*99******************************99988..44557777665 PP

>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05      0.16      27     104 ..     180     269 ..     166     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
     MOZ_SAS  27 qnLcllaklFldhktlyy.dvepFlfYvltea.......deegahivGyFskeke....saeeynlaCilvlPpyqrkgyGklliefsYe 104
                 + + l+  l+++  + +    +++ f vl+e+       d +++h+vGy          ++ +  ++  l+lPpyq+ g+G+ l    Y+
  CDO68895.1 180 RRMQLFVLLYIEGGSYISeSEDSWEFVVLYEKrrrrsspDITTYHFVGYSTLYPFycfpERVRLRISQFLILPPYQQDGHGSALYTAIYQ 269
                 566777777887776665145689999999997888777777899***977654322223457889****************99887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2924.70
//
Query:       CDO68896.1  [L=609]
Description: hypothetical protein BN946_scf185000.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-06   27.8   0.5    6.7e-06   25.9   0.1    2.2  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   3.7e-10   6.7e-06       1      46 [.      63     123 ..      63     125 .. 0.75
   2 ?   -1.9   0.0      0.18   3.2e+03      12      23 ..     238     249 ..     237     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.7e-10
  F-box-like   1 isrLPdEiLlqIFsy.....Lppsd..........LlrlalVCrrWrrvaldtplLWrrlv 46 
                 i+rLP+E L+ I+s+     L+++           ++r   VCr+Wr  ++  pl+W+ ++
  CDO68896.1  63 INRLPTETLVLILSFvqhglLDFERathlgkelrsWSRTFNVCRSWRATVCGAPLFWQDIF 123
                 689**********865555434442334444444499999*****************9987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.18
  F-box-like  12 IFsyLppsdLlr 23 
                 IFs +p +d+ +
  CDO68896.1 238 IFSLVPRRDQFP 249
                 9*9889999544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4292.12
//
Query:       CDO68897.1  [L=220]
Description: hypothetical protein BN946_scf185000.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1470.76
//
Query:       CDO68898.1  [L=185]
Description: hypothetical protein BN946_scf185000.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0051   17.0   0.0      0.029   14.6   0.0    2.0  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.032   14.6   0.0        2.2    8.8   0.0    2.4  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
       0.11   12.4   0.0        6.6    6.7   0.0    2.5  2  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.8e-06     0.029      19      86 ..      44     181 ..      22     185 .] 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-06
                     HHHHHHHHHHHSTTC..EEEEEEETTEEEEEE............................................................... CS
  Acetyltransf_1  19 aseeefeesfsleae..gllvaeedgeliGfi............................................................... 48 
                     +  ++ +   +++ +  +++ a ed+el+Gf+                                                               
      CDO68898.1  44 TRAHMARMMVREHVCwgEFWTATEDDELVGFMtwfppqselaipkderaklaapfmaalsgdgkqyiatvvrffmsrlignhgtdrvspqmgeef 138
                     333334445666777779999***********999999999999999999999999999999999999999999888888888888888755555 PP

                     ......EEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHH CS
  Acetyltransf_1  49 ......sllkipd....ekggvayieslaVspeyrgkGlGsaLleale 86 
                           +           k + ++++  + + + +++G+ ++Lle + 
      CDO68898.1 139 pqfvaqC-----IgtpnGKHDGWWLRIAMTRTDKQRQGICRKLLEPVR 181
                     5555541.....0443234666666666678999*********99765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.018   1.1e+02       3      22 ..      60      79 ..      59      95 .. 0.73
   2 ?    8.8   0.0   0.00036       2.2       6      47 ..     141     178 ..     134     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.018
                    EEEEEEEETTEEEEEEEEEE CS
  Acetyltransf_7  3 gevfVaeddgkivGfialsl 22
                    ge++ a +d++ vGf+   +
      CDO68898.1 60 GEFWTATEDDELVGFMTWFP 79
                    68************976544 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00036
                     EEEEETTEEEEEEEEEEESTCTEEEE.E-GGGTTSSHHHHHHH CS
  Acetyltransf_7   6 fVaeddgkivGfialslldaeitrla.VdpeyrgkGiGraLle 47 
                     fVa    + +G+   +++ ++  r+a ++++ +++Gi r+Lle
      CDO68898.1 141 FVA----QCIGTPNGKHD-GWWLRIAmTRTDKQRQGICRKLLE 178
                     455....44664443333.3455566699*************8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.015        89      29      46 ..      58      75 ..      36      86 .. 0.73
   2 ?    6.7   0.0    0.0011       6.6      58      80 ..     162     184 ..     143     185 .] 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.015
  Acetyltransf_10 29 gealllvaeeggkivGvi 46
                      +  ++ a+e++++vG+ 
       CDO68898.1 58 CWGEFWTATEDDELVGFM 75
                     4557999*********97 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0011
  Acetyltransf_10  58 fVdpeyrgqGigkaLleaveeea 80 
                      + + + ++qGi ++Lle v++++
       CDO68898.1 162 MTRTDKQRQGICRKLLEPVRQKV 184
                      678899***********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1390.70
//
Query:       CDO68899.1  [L=96]
Description: hypothetical protein BN946_scf185000.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-18   64.8   0.0      9e-18   64.6   0.0    1.0  1  MIF       Macrophage migration inhibitory factor (MIF)


Domain annotation for each model (and alignments):
>> MIF  Macrophage migration inhibitory factor (MIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0     5e-22     9e-18       1      95 [.       2      95 ..       2      96 .] 0.96

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 5e-22
                -EEEEEESS-GGGS-TTHHHHHHHHHHHHHTS-GGG-EEEEE-S----BTTB-SS-EEEEEEEESSSSHHHHHHHHHHHHHHHHHHHT--GGGEE CS
         MIF  1 PmlevdtnlpkekvpaglekrltaalakalgkPedrvavevapgqalvfggstdPcavlslksiGvvgaeqnrshskkllellakeLklskdrvl 95
                P +e++tn+  +  p+++  + ++ +a++lgkPe++++v+ +    l+f+gs dP   +s+ s+  + ++ n+ +s+k++ +  ++L ++ dr +
  CDO68899.1  2 PSVELKTNVRVAD-PKAFSLEFSKFAAETLGKPESYISVHYNYSELLTFNGSFDPAVIVSVISLDNINPKANEEYSRKFFAFFKEKLGVPDDRGY 95
                7899****97655.9*****************************************************************************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 721.74
//
Query:       CDO68900.1  [L=1250]
Description: hypothetical protein BN946_scf185000.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-12   45.6   0.0    3.8e-08   33.0   0.0    2.3  2  Amidohydro_1  Amidohydrolase family
    8.9e-11   41.9   0.3    0.00035   20.2   0.0    2.4  2  Amidohydro_3  Amidohydrolase family
     0.0014   18.5   0.9         15    5.7   0.1    4.5  4  PD40          WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   5.3e-05      0.32       1      28 [.     887     913 ..     887    1000 .. 0.80
   2 !   33.0   0.0   6.4e-12   3.8e-08     275     317 ..    1157    1199 ..    1135    1226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.3e-05
                   EEEE-EEEEEEECETTECSSS..GHHHHHS CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga..tledwlv 28 
                   +v+PG+ID+H H +   ++++  +  +w +
    CDO68900.1 887 YVVPGFIDVHAHWN---GFDTthPARSWEM 913
                   69***********7...5566665666653 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 6.4e-12
                    TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEE CS
  Amidohydro_1  275 deegglslkealrmaTingAkalglddkvGsievGkdADlvvv 317 
                     ++ggl+ +e+lr+aT ++A+ lg+ d vGs+++Gk ADlvv 
    CDO68900.1 1157 TKAGGLKNYEVLRAATSDAAITLGIFDSVGSLTPGKLADLVVY 1199
                    46899*************************************8 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   8.8e-08   0.00052       2      22 ..     880     900 ..     879     914 .. 0.85
   2 !   20.2   0.0   5.8e-08   0.00035     404     471 ..    1158    1225 ..    1070    1226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 8.8e-08
  Amidohydro_3   2 viDakGrlvlPGFvDsHtHla 22 
                   v D +G++v+PGF+D+H+H  
    CDO68900.1 880 VLDVEGGYVVPGFIDVHAHWN 900
                   88*****************43 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 5.8e-08
  Amidohydro_3  404 pdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaear.vrltvvdGrv 471 
                        l  +e+l++ T+++A +lg  d  G+L +G+ ADlvv+    +d+ + ++  +r +r +v +Grv
    CDO68900.1 1158 KAGGLKNYEVLRAATSDAAITLGIFDSVGSLTPGKLADLVVYP-PGVDLLEGDISGTRdIRFVVRGGRV 1225
                    55667789**********************************7.3333333445555557777777765 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.016        98      10      38 .]     114     142 ..     107     142 .. 0.87
   2 !    4.5   0.0     0.006        36      16      28 ..     347     359 ..     335     362 .. 0.84
   3 ?   -2.4   0.0      0.86   5.2e+03      21      30 ..     576     585 ..     575     588 .. 0.81
   4 !    5.7   0.1    0.0025        15      12      25 ..     742     755 ..     733     757 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.016
                 .EEEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40  10 negaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 ++ +P fSP G   +F Sd ++G  +I++
  CDO68900.1 114 HDSDPHFSPEGDAVVFRSDAELGVENIWI 142
                 789999*************8877777886 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.006
                 E-TTSSEEEEEEE CS
        PD40  16 fSPDGkrlaFsSd 28 
                 +S DG++laF+++
  CDO68900.1 347 LSRDGRTLAFVRR 359
                 678********97 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.86
                 SEEEEEEECT CS
        PD40  21 krlaFsSdRg 30 
                 +++aF++++g
  CDO68900.1 576 RKIAFVRTGG 585
                 79*****954 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0025
                 EEEEE-TTSSEEEE CS
        PD40  12 gaPsfSPDGkrlaF 25 
                 +++++S DG++l +
  CDO68900.1 742 HSITWSGDGSKLFW 755
                 899*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 7435.42
//
Query:       CDO68901.1  [L=322]
Description: hypothetical protein BN946_scf185000.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-10   38.4  14.8    2.1e-09   37.3  14.8    1.6  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.011   15.8   7.6      0.027   14.5   7.6    1.6  1  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3  14.8   2.4e-13   2.1e-09       1      38 []      16      57 ..      16      57 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.4e-13
                -TTT--.....B-SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND  1 CavCgk....aealkkCagCksvfYCskeCqradwksHkteC 38
                C++Cgk    +++lkkCa C  v YCsk+Cqr  w +Hk+ C
  CDO68901.1 16 CKWCGKterpSQKLKKCAACGYVLYCSKQCQRDGWLEHKEAC 57
                9******99999999**************************9 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   7.6   3.1e-06     0.027       2      49 ..      16      62 ..      15      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-06
    zf-Mss51  2 CPvpkhkqtapkhvdfeCpdCGiptycseehwedDyeahleicdtLrq 49
                C  + +++  p++   +C  CG++ ycs++  +d   +h+e c  +r+
  CDO68901.1 16 CKWCGKTE-RPSQKLKKCAACGYVLYCSKQCQRDGWLEHKEACRYMRE 62
                66665444.56777779******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2501.21
//
Query:       CDO68902.1  [L=190]
Description: hypothetical protein BN946_scf185000.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1397.43
//
Query:       CDO68903.1  [L=183]
Description: hypothetical protein BN946_scf185000.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1285.60
//
Query:       CDO68904.1  [L=153]
Description: hypothetical protein BN946_scf185000.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1113.07
//
Query:       CDO68905.1  [L=477]
Description: hypothetical protein BN946_scf185000.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-44  151.6   1.2    5.1e-21   75.2   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.2e-29  100.3   0.4    1.2e-27   96.3   0.1    2.6  2  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    5.5e-08   32.6   0.2    7.4e-08   32.2   0.2    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
      8e-06   24.8   4.7      0.015   14.0   1.6    2.7  3  HI0933_like    HI0933-like protein
     0.0005   19.4   2.0       0.31   10.3   0.0    3.1  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0019   17.3   4.2     0.0044   16.2   4.2    1.7  1  GIDA           Glucose inhibited division protein A
     0.0066   16.6   1.2      0.018   15.3   1.2    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.053   12.6   0.0    1.8  2  Lycopene_cycl  Lycopene cyclase protein
      0.034   13.4   0.5       0.07   12.4   0.5    1.4  1  Thi4           Thi4 family
      0.036   13.2   0.0       0.14   11.2   0.0    1.9  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
       0.21   12.2   4.0        7.1    7.3   1.2    3.0  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.85    9.6   5.1        6.5    6.7   0.0    2.8  3  NAD_binding_9  FAD-NAD(P)-binding
        3.3    6.7   9.9       0.29   10.2   4.0    2.1  3  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   3.7e-24   5.1e-21       1     132 [.      12     175 ..      12     190 .. 0.92
   2 !   75.1   0.2   3.9e-24   5.4e-21     193     293 ..     218     317 ..     213     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 3.7e-24
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH...........................HHHHCHHHHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias...........................evvkklnqgi 67 
                  +d+v iGgG +G+a a+++a +ga v+l+e    l+gtc+n+gc+++k+++++a+ ae ++                           e +++ln  +
   CDO68905.1  12 YDIVFIGGGSGGVAGARRAASYGATVALIEvsekLGGTCVNVGCVPKKIMWHAADIAEKIRhaqgyefkgpgigaphfswttfkpkrdEYITRLNGIY 109
                  699**************************99999************************9999**************************99******** PP

                  CCCHCCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BC...TCTTC.TTBEECCSECHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  68 elllgeevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdl...gipGvaenvgklvrtlds 132
                  ++  ++e+v++ +g+++v   +++e     g + +++ d++ +AtG++p ++    ipG+   +      ++s
   CDO68905.1 110 DNNVAKEGVELHYGRARVLSPQSVEvtksdGTKYTLTTDRVCVATGGRPTIPsedEIPGA-SLG------ITS 175
                  ***********************99***9999999999**************99999999.333......333 PP

  == domain 2  score: 75.1 bits;  conditional E-value: 3.9e-24
                  HHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HH CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 193 lekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdeflrtnvpgiyaiGDvaggkggpelaq 288
                  +++ G+++++++ vk+++g +  +l+++l++g ++ +d++++a+G+ ++te l+ e+lg++lde+g ++vde+++t v gi a+GDva   g+  l++
   CDO68905.1 218 MKHTGINFQHRAHVKKVEGTKGqELTLHLDNGVTLTVDTLIWAIGRHANTEELGlEALGVKLDEKGNVLVDEYQETGVAGITALGDVA---GKALLTP 312
                  5666*****************99999**************************************************************...6666666 PP

                  HHHHH CS
                  xxxxx RF
  Pyr_redox_2 289 aAvqq 293
                  +A+++
   CDO68905.1 313 VAIAA 317
                  66665 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         4   5.6e+03      58      85 ..     291     319 ..     284     326 .. 0.71
   2 !   96.3   0.1   8.7e-31   1.2e-27       1     109 [.     341     476 ..     341     477 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4
                    TTTBEEEEEEECTTHHH.HHHHHHHHHHT CS
  Pyr_redox_dim  58 ktgkvlGahivGpgage.liqelavaika 85 
                    ++  v G++ +G+ ag+ l+  +a+a   
     CDO68905.1 291 QETGVAGITALGDVAGKaLLTPVAIAAAR 319
                    66779999999999988666777776655 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 8.7e-31
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEE.EEEEEE......................CGHHHCHTTH..TEEEEEEEEETTTTBEEEEEEEC CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikv.gkfpfk......................angralayae..tkgfvKlvadaktgkvlGahivG 69 
                    iptvvf++p +++vGlte eA++++++  ik+ +++pf                       a++ +++ +e  +  + Klv+   +++v+G+hi+G
     CDO68905.1 341 IPTVVFSHPTIGTVGLTEPEARKKYGDenIKIcKTLPFPspapspahspslrtrtdkssfrALYFSMIPEEhkEPSVYKLVCAGPEERVVGIHIIG 436
                    7**************************99665145566689****************999999999999999999********************* PP

                    TTHHHHHHHHHHHHHTTSBHHHHHTSBSSSSSTGGGGHCH CS
  Pyr_redox_dim  70 pgageliqelavaikagltvedladtihihPtlsealkea 109
                    +g +e++q++ va+k+g+t++dl++t++ihPt +e+l+++
     CDO68905.1 437 QGSDEIMQGFGVAVKMGATKADLDNTVAIHPTSAEELVTM 476
                    *************************************987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.2   5.4e-11   7.4e-08       1     109 [.      13     125 ..      13     156 .. 0.64

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 5.4e-11
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrq..rggarlk.krskwntfepe......v 88 
                   D+v +GGg++Gva A  Aa  Ga+v+L+e ++ lGG+  + +  +   ++++      ia++++++     +g    +  +++w+tf+p+       
    CDO68905.1  13 DIVFIGGGSGGVAGARRAASYGATVALIEVSEKLGGTCVNVGCVPKKIMWHA----ADIAEKIRHAQGYefKGPGI-GaPHFSWTTFKPKrdeyitR 104
                   99*************************************9988777777733....34555555444443222222.23556665555541111113 PP

  FAD_oxidored  89 akavleemlaeagvtvllntr 109
                   ++ ++++ +a++gv++ +++ 
    CDO68905.1 105 LNGIYDNNVAKEGVELHYGRA 125
                   445556666666777666654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.6   1.1e-05     0.015       2      36 ..      13      47 ..      12      54 .. 0.94
   2 ?   -0.9   0.0      0.36     5e+02     119     165 ..     113     157 ..     107     163 .. 0.60
   3 !   10.4   0.0   0.00014      0.19     118     184 ..     217     284 ..     213     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 d++ iGgG  G+ +A +aa+ g+ V+l+e  +klg
   CDO68905.1 13 DIVFIGGGSGGVAGARRAASYGATVALIEVSEKLG 47
                 899***************************99998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.36
                  HHHHT-EEE-S-.-EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 119 lkeagvklrlet.evksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  + ++gv+l++ + +v s   ++ + ++ +  ++ +l++d++ +AtGG 
   CDO68905.1 113 VAKEGVELHYGRaRVLSP--QSVE-VTKSDGTKYTLTTDRVCVATGGR 157
                  566666666644133333..1222.2222236779999********96 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00014
                  HHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS.-GGGT--SHHHHHHHHTT CS
  HI0933_like 118 elkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlS.iPklGstgkgyklaeqfg 184
                   +k++g++++ + +vk+ve +++++++++++++ +l+ d+l+ A+G  +   +lG +  g+kl e+ +
   CDO68905.1 217 WMKHTGINFQHRAHVKKVEGTKGQELTLHLDNGVTLTVDTLIWAIGRHAnTEELGLEALGVKLDEKGN 284
                  57899*****************************************8762456887777777776655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.075     1e+02       2      29 ..      16      42 ..       8      52 .. 0.73
   2 !    5.0   0.0    0.0091        13     242     271 ..     130     160 ..      92     183 .. 0.74
   3 !   10.3   0.0   0.00022      0.31     223     301 ..     219     298 ..     213     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.075
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEk 29
                  iG+G  G+a a  +   g  ++  +E 
   CDO68905.1 16 FIGGGSGGVAGARRAASYGA-TVALIEV 42
                 47888888888888888777.4666664 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0091
  Pyr_redox_3 242 eeeykvktedgkkvev.kddvvlatGykpdl 271
                   ++++v+++dg+k +  +d+v +atG +p++
   CDO68905.1 130 PQSVEVTKSDGTKYTLtTDRVCVATGGRPTI 160
                  4688999999999987466777779999975 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00022
  Pyr_redox_3 223 keekikvlfnaevkeik.ekeeeykvktedgkkvevkddvvlatGykpdlsf..lkkslfeldedgrpvlteeteetnvpgl 301
                  k++ i++  +a+vk+++ +k +e +++ ++g +++v d  + a+G + +++   l++ +++lde+g ++++ e +et v g+
   CDO68905.1 219 KHTGINFQHRAHVKKVEgTKGQELTLHLDNGVTLTV-DTLIWAIGRHANTEElgLEALGVKLDEKGNVLVD-EYQETGVAGI 298
                  454588888889999984556778888999888777.7779999999998873445588888888877776.4667777776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   4.2   3.2e-06    0.0044       1      61 [.      13      76 ..      13     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEidalgg 61
                d++ iGgG  G++ A  aa  Ga v+Li    +  +t+++++C p      ++ + + i++ +g
  CDO68905.1 13 DIVFIGGGSGGVAGARRAASYGATVALIevsEKLGGTCVNVGCVPKKIMWHAADIAEKIRHAQG 76
                6899************************99778889*********9888877778887777665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.2   1.3e-05     0.018       2      35 ..      17      50 ..      17      63 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                   E--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8  2 vGaGlsGlvaAylLakagfdvlllekrdrlGGra 35
                   +G+G +G + A+++a +g+ v l+e +++lGG +
     CDO68905.1 17 IGGGSGGVAGARRAASYGATVALIEVSEKLGGTC 50
                   8*******************************98 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.9e-05     0.053       1     140 [.      13     155 ..      13     170 .. 0.60
   2 ?   -1.5   0.0      0.73     1e+03     105     140 ..     227     262 ..     220     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.9e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl........lfpnnyvWsdefedlgaleecvehsWsgtivylddgkkillgraYgrvsskr 88 
                    D+v+iG+G  g++ A r   a +g  v lie s++l          p +  W   + + + + +++++  +g  + ++ ++ ++   + +    +r
     CDO68905.1  13 DIVFIGGGSGGVAGARRA--ASYGATVALIEVSEKLggtcvnvgCVPKKIMWHAADIAEK-IRHAQGYEFKGPGIGAPHFSWTTFK-PKRDEYITR 104
                    9*****************..*************998221111111222234444444433.6666666666666666666655555.333333445 PP

  Lycopene_cycl  89 lkeellerlvengvklleakvesveeeeageslvvleggr..kirarlvvdarg 140
                    l+    ++++++gv+l+ +++    ++++    v+ ++g   ++    v +a+g
     CDO68905.1 105 LNGIYDNNVAKEGVELHYGRARVLSPQSV---EVTKSDGTkyTLTTDRVCVATG 155
                    56666666666666666666555555555...3444444435566666666665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.73
  Lycopene_cycl 105 leakvesveeeeageslvvleggrkirarlvvdarg 140
                    ++a v++ve  +  e +  l++g+++   + + a g
     CDO68905.1 227 HRAHVKKVEGTKGQELTLHLDNGVTLTVDTLIWAIG 262
                    689999999999999999999999999888888877 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   5.1e-05      0.07      17      67 ..      11      60 ..       7      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEE CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsai 67
                + D+v +G+Gs G++ a+  a   +  va++e s  +GG     G + ++i
  CDO68905.1 11 KYDIVFIGGGSGGVAGARRAASY-GATVALIEVSEKLGGTCVNVGCVPKKI 60
                57******************999.***************988777665555 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.14     133     164 ..     131     162 ..      93     184 .. 0.83
   2 ?   -1.4   0.0      0.72   9.9e+02     294     338 ..     222     261 ..     215     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
  K_oxygenase 133 ltveskdaegeeeelearnlvlgvGtepkiPe 164
                   +ve+++++g++ +l++ ++++++G++p+iP+
   CDO68905.1 131 QSVEVTKSDGTKYTLTTDRVCVATGGRPTIPS 162
                  46777789***********************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.72
  K_oxygenase 294 rlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlAT 338
                   ++++++ +v+++e ++ +e++l+l+n       tl+vd+++ A 
   CDO68905.1 222 GINFQHRAHVKKVEGTKGQELTLHLDN-----GVTLTVDTLIWAI 261
                  5778899999***99999999999998.....5566666666665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.2    0.0052       7.1       2      35 ..      14      47 ..      13      52 .. 0.94
   2 ?   -1.6   0.0       3.1   4.3e+03      47      61 ..     110     124 ..     103     142 .. 0.80
   3 ?    3.9   0.0     0.057        78      50      72 ..     218     240 ..     214     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v++GgG  g+  A  +a +g+ V ++e s+kl 
  CDO68905.1 14 IVFIGGGSGGVAGARRAASYGATVALIEVSEKLG 47
                89****************************9987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.1
                 HHHHHHTTEEEECSE CS
   Pyr_redox  47 qeklekngievllnt 61 
                  +++ k+g+e+++++
  CDO68905.1 110 DNNVAKEGVELHYGR 124
                 567889999999875 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.057
                 HHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  50 lekngievllntkveeiegsedg 72 
                 +++ gi++ + + v+++eg++ +
  CDO68905.1 218 MKHTGINFQHRAHVKKVEGTKGQ 240
                 6788**************99876 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6       1.7   2.4e+03       2      32 ..      16      41 ..      15      52 .. 0.70
   2 ?    4.4   0.0     0.025        35     116     154 ..     117     155 ..     102     157 .. 0.74
   3 ?    6.7   0.0    0.0047       6.5     120     155 ..     227     263 ..     216     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfd 32
                    +G+G  G+a ++r ++        ++ l++
     CDO68905.1 16 FIGGGSGGVAGARRAASYG-----ATVALIE 41
                   79*******9999987763.....4444444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.025
  NAD_binding_9 116 tvevhraevvdleeradgqavlladgas..laadaVvLAlG 154
                     ve+h +++  l+++  +++v+++dg++  l+ d+V +A+G
     CDO68905.1 117 GVELHYGRARVLSPQ--SVEVTKSDGTKytLTTDRVCVATG 155
                    466677777777655..667888888763379********9 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0047
  NAD_binding_9 120 hraevvdleeradgq.avlladgaslaadaVvLAlGh 155
                    hra+v ++e ++++  +++l++g +l++d ++ A+G 
     CDO68905.1 227 HRAHVKKVEGTKGQElTLHLDNGVTLTVDTLIWAIGR 263
                    8999999*999887559*****************995 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.0   0.00021      0.29       1      38 [.      13      50 ..      13      53 .. 0.94
   2 ?   -1.9   0.0      0.94   1.3e+03     182     204 ..     137     159 ..     126     172 .. 0.80
   3 ?   -2.7   0.2       1.7   2.4e+03     374     403 ..     275     306 ..     273     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   D++ iG+G +G a A +aa  G++va++e  ++ gg+ 
     CDO68905.1 13 DIVFIGGGSGGVAGARRAASYGATVALIEVSEKLGGTC 50
                   8999****************************999975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.94
                    TTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 182 pesgrevrirakavvlatgGfgr 204
                    +++g++ +++ ++v +atgG + 
     CDO68905.1 137 KSDGTKYTLTTDRVCVATGGRPT 159
                    478899999999********985 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
                    -EEEBETTSBE..STTEEESSBTEEE-STCEE CS
  FAD_binding_2 374 gGvetdengrv..ldadgqpipGLYAaGevaa 403
                     Gv+ de+g+v  ++ +++ ++G  A G va+
     CDO68905.1 275 LGVKLDEKGNVlvDEYQETGVAGITALGDVAG 306
                    59999999999777778888999999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3375.61
//
Query:       CDO68906.1  [L=473]
Description: hypothetical protein BN946_scf185000.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.064   13.3   6.7       0.22   11.5   6.7    1.9  1  DUF2514      Protein of unknown function (DUF2514)
        3.4    8.5  12.8       0.27   12.1   2.4    2.7  3  Histone_HNS  H-NS histone family


Domain annotation for each model (and alignments):
>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.7   2.5e-05      0.22      22      80 ..     271     329 ..     235     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
     DUF2514  22 rskeeaewekrwadrdaedsqakviaeeaaReeeqrrkaaaekavkdaqekaaaArada 80 
                 +++++a   + +ad+d +   a+    +++Re+e+++ + +e+a  +aq+k a    +a
  CDO68906.1 271 QQQSSARTGAPSADEDDGSGMAWLKRRREQREREKKEREERERAEAEAQHKNATTEHGA 329
                 2344555556667**************************************99987776 PP

>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.74   6.6e+03      59      89 ..     103     132 ..      74     134 .. 0.75
   2 ?   12.1   2.4     3e-05      0.27       2      50 ..     294     341 ..     293     362 .. 0.82
   3 ?    0.3   3.3      0.14   1.3e+03      10      50 ..     413     453 ..     411     467 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.74
                  ---TTT-SSS.-EEEEES----HHHHHHH.. CS
  Histone_HNS  59 vpaKYrdpetegetWsGrGrkPkwlkaalaa 89 
                  +p+ + d +  + t+   G  P  +  alaa
   CDO68906.1 103 LPPAFFDDDA-ESTYAQDGQPPLSVSSALAA 132
                  7888888886.99999999999999998876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SSS-----EE CS
  Histone_HNS   2 LkalieelekqeealeaeerkealaeirelaaeyGltleelaaeakkak 50 
                  Lk+ +e++e++++++e++er+ea a+ +++  e+G + e l++++ +++
   CDO68906.1 294 LKRRREQREREKKEREERERAEAEAQHKNATTEHGAEQEFLGSAS-STP 341
                  7888999****************************8888775443.333 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.14
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX----SSS-----EE CS
  Histone_HNS  10 ekqeealeaeerkealaeirelaaeyGltleelaaeakkak 50 
                  e++ee+ e+   +eal + r+ + + G  +e++a+++++  
   CDO68906.1 413 EEEEEEEEEDDEEEALLQERSRLTALGAGVEKIARHKEQHD 453
                  34555567888888999999999999999999998877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1492  (0.0832171); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 3291.16
//
Query:       CDO68907.1  [L=192]
Description: hypothetical protein BN946_scf185000.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1274.19
//
Query:       CDO68908.1  [L=510]
Description: hypothetical protein BN946_scf185000.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3576.68
//
Query:       CDO68909.1  [L=276]
Description: hypothetical protein BN946_scf185000.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-08   33.1   0.0    6.3e-07   29.4   0.0    2.4  3  Rpp20      Rpp20 subunit of nuclear RNase MRP and P
  ------ inclusion threshold ------
      0.067   12.9   0.0       0.11   12.2   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> Rpp20  Rpp20 subunit of nuclear RNase MRP and P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.42   3.8e+03     112     129 ..      71      88 ..      27      94 .. 0.62
   2 ?    0.4   0.0     0.063   5.7e+02       3      25 ..     122     144 ..     120     150 .. 0.86
   3 !   29.4   0.0     7e-11   6.3e-07      62     136 ..     150     218 ..     145     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.42
       Rpp20 112 ankaaededeeepetrtR 129
                 ++k a+++++e++++ tR
  CDO68909.1  71 DTKRARESSGEKTTNATR 88 
                 334444444454444444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.063
       Rpp20   3 pktiyVssktpfmsavkRvqklL 25 
                 ++ i V+++t++ ++++R++ + 
  CDO68909.1 122 KNYICVTRRTELGAYLRRCKDVF 144
                 67899**************9865 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 7e-11
       Rpp20  62 eeVfvkatGrAiekalsvgrwf.....qekeeykvrvetgsVevvDdivedeeekankaaededeeepetrtRwvsmvev 136
                 +  ++ a+G+Ai++ +++++ +      +++e++ +v+tg+Vev D++  d+           ++e+ ++rtR  s+v v
  CDO68909.1 150 KTLYLSAMGAAIPHLMQLALSLpailpYSQDEIHTEVTTGTVEVQDELIPDD-----------EDEDVSYRTRGKSTVSV 218
                 567899***************9998887888******************998...........77899999999998877 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05      0.11      39      80 ..      92     129 ..      63     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
   Prok-E2_B  39 dlrlvypds.fpllppavflqdpeqlkllpHintfggaLClle 80 
                 ++r ++p+  fp++p +v+++ p     + H ++ ++++C+  
  CDO68909.1  92 KVRKLVPPRpFPTVPTSVSATGPR----SAHTEG-KNYICVTR 129
                 4555677777**************....78****.*****953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1972.36
//
Query:       CDO68910.1  [L=426]
Description: hypothetical protein BN946_scf185000.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-48  162.4   0.1    1.4e-47  161.3   0.1    1.6  1  eRF1_2          eRF1 domain 2
      2e-39  134.6   0.3      4e-39  133.6   0.3    1.5  1  eRF1_3          eRF1 domain 3
    1.9e-20   73.2   0.0      3e-20   72.5   0.0    1.3  1  eRF1_1          eRF1 domain 1
    7.7e-11   42.4   0.1    1.3e-10   41.7   0.1    1.3  1  acVLRF1         Actinobacteria/chloroflexi VLRF1 release fact
    3.6e-09   37.0   0.1    6.4e-09   36.2   0.1    1.4  1  baeRF_family10  Bacterial archaeo-eukaryotic release factor f


Domain annotation for each model (and alignments):
>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.1   3.9e-51   1.4e-47       1     133 []     132     264 ..     132     264 .. 0.99

  Alignments for each domain:
  == domain 1  score: 161.3 bits;  conditional E-value: 3.9e-51
                 EEEEEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHH CS
      eRF1_2   1 kvglivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdlld 99 
                 k+g+iv+d++++ +g++ g+++ev++k++v++PkKh+rGgqsa rf+Rlr+ek++++++kvae a ++f+++dk +++g++lag++++k+e+ ++d++d
  CDO68910.1 132 KFGFIVMDGNGTLFGTVAGNTREVIHKFTVDLPKKHGRGGQSALRFARLRDEKRHNYIRKVAELAVQHFITNDKVNVTGLVLAGSADFKTELSQSDMFD 230
                 69************************************************************************************************* PP

                 HHHHTCCEEEEE-S-TSCHHHHHHHHCCHHHHCC CS
      eRF1_2 100 aelkkkviklvdvsyggesglnevlekaaevlkd 133
                  +l++kvik+vdvsygge+g+n+++e aae+l++
  CDO68910.1 231 PRLAAKVIKVVDVSYGGENGFNQAIELAAEALSN 264
                 *****************************99985 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.3   1.1e-42     4e-39       1     113 []     267     404 ..     267     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.1e-42
                 HHHHHHHHHHHHHHHHCTCSSEEESHHHHHHHHHTT-EEEEEEEHCHHTSSSHHHHHS.....................-HHH-HHHHHH....HHHHH CS
      eRF1_3   1 liqekklleefleelakdtgkavYGveevlkalemgAvetLLvseelersrdtlkekv.....................ketgeelelve....lieel 74 
                 ++qekkl++++++e+++dtgk+++Gv+++lkale+gAvetL+v+e+l+++r++l++++                     k+tg e+e+v     l+e++
  CDO68910.1 267 FVQEKKLIQRYFDEISQDTGKYCFGVDDTLKALELGAVETLIVWENLDITRYVLRNAAgeevvihvnkeqekererfidKSTGLEMEKVCepqpLLEWF 365
                 68******************************************************99*********************99******9988******** PP

                 HHHHHHTT-EEEEE-TTSHHHHHHHHHTTTEEEEESS-- CS
      eRF1_3  75 venveesgakveiisseseeGeqlvkafgGiaaiLRykv 113
                 +e+++e+ga++e+++++s+eG+q+vk+fgGi+++LRykv
  CDO68910.1 366 AEKYKEFGANLEFVTNKSQEGAQFVKGFGGIGGLLRYKV 404
                 *************************************97 PP

>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   8.4e-24     3e-20       1     128 [.       5     126 ..       5     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 8.4e-24
                 HEEEEE..CTBTTSCCEEEEEE-SCHHHHHHHHHCHTTHEEEEEEEECHHH.......--CEEEEEEEEEEEEEEECTT...SSEEEEEEEEEEGGGG- CS
      eRF1_1   1 mkllkr..dlekdgsgsvtLipeddedlwhlynliapgdsvrastvrkvqresstgsreservklkLtikvekvdfdkd...agvlrisGkvieenehv 94 
                 +kl+k+  ++++ g+++++Li++++++++ ++ +++++++++++++++v+r          +v++++t+++++++++++   +g++ + G++ +e++  
  CDO68910.1   5 KKLIKSldSARGAGTSMISLIIPPKDQISRVSAMLTQEYGTASNIKSRVNR---------LSVLSAITSTQQRLKLYNRvppNGLVLFVGTILTEEG-- 92 
                 69999998899**************************************99.........9******************9*****************.. PP

                 -TTSEEEEEE-TTSEEEEEECE.ESHHHHHHHHHH CS
      eRF1_1  95 klgafhtldlelkrpftiikee.wdsfalerLkea 128
                  +++++++d+e+++p++++ +  +++f++e+L+e+
  CDO68910.1  93 -KEKKVSFDFEPHKPINTSLYLcDNKFHTEALQEL 126
                 .9********************9**********97 PP

>> acVLRF1  Actinobacteria/chloroflexi VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   3.5e-14   1.3e-10       3     110 ..     133     244 ..     131     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 3.5e-14
     acVLRF1   3 lgvllvrrggfavgvveggelvaskvgtrdvqgrtaaGGwSqqRfaRrrenqadalleavaeaaarllaeesae....vvlgGdrslvaevledarlap 97 
                 +g+++    g  +g+v g++++  +++t d  +++ +GG+S  RfaR r+++  + +++vae a +++  +++     +vl+G      e+ ++   +p
  CDO68910.1 133 FGFIVMDGNGTLFGTVAGNTREVIHKFTVDLPKKHGRGGQSALRFARLRDEKRHNYIRKVAELAVQHFITNDKVnvtgLVLAGSADFKTELSQSDMFDP 231
                 5677777788899*******************************************************7776667889*******99999999877666 PP

     acVLRF1  98 latlareelldvp 110
                   ++++ +++dv 
  CDO68910.1 232 RLAAKVIKVVDVS 244
                 5555555565655 PP

>> baeRF_family10  Bacterial archaeo-eukaryotic release factor family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.8e-12   6.4e-09       3     122 ..     120     243 ..     119     262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.8e-12
  baeRF_family10   3 lapLlealdeyerygvvlvdreraRlfevylgeleeveevegevpgrtktggwksqdrfqrreeeqaerhlkevAellaklleerg...verlvl 94 
                     ++ L e+l+ + ++g +++d ++  + +v++   e  ++++ + p+++ +gg+ s  rf+r ++e+++ ++++vAel+++ + +++   v+ lvl
      CDO68910.1 120 TEALQELLESDSKFGFIVMDGNGTLFGTVAGNTREVIHKFTVDLPKKHGRGGQ-SALRFARLRDEKRHNYIRKVAELAVQHFITNDkvnVTGLVL 213
                     6789*******************9999999999999*****************.*************************9998888899****** PP

  baeRF_family10  95 gGdeeetaall..drlpkalrarvvgtlpl 122
                     +G ++ + +l   d +  +l+a+v+  +++
      CDO68910.1 214 AGSADFKTELSqsDMFDPRLAAKVIKVVDV 243
                     ***888887752267999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.55
# Mc/sec: 2316.29
//
Query:       CDO68911.1  [L=1454]
Description: hypothetical protein BN946_scf185000.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-38  129.1   0.0    3.3e-18   66.2   0.0    2.5  2  Ribonuclease_3   Ribonuclease III domain
    3.3e-22   79.0   0.1    4.3e-13   49.5   0.0    3.5  2  Ribonucleas_3_3  Ribonuclease-III-like
    1.7e-16   60.1   0.0    3.9e-16   59.0   0.0    1.7  1  Dicer_dimer      Dicer dimerisation domain
    1.9e-14   53.8   0.0    3.5e-14   53.0   0.0    1.4  1  DEAD             DEAD/DEAH box helicase
    1.2e-13   51.5   0.0    2.4e-13   50.4   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
    1.3e-06   28.7   0.0    3.2e-06   27.5   0.0    1.7  1  Helicase_C       Helicase conserved C-terminal domain
     0.0013   18.5   0.0     0.0028   17.4   0.0    1.5  1  SWI2_SNF2        SWI2/SNF2 ATPase


Domain annotation for each model (and alignments):
>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   8.4e-20   2.2e-16       1     105 []     950    1059 ..     950    1059 .. 0.80
   2 !   66.2   0.0   1.3e-21   3.3e-18       1     104 [.    1132    1243 ..    1132    1244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 8.4e-20
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTT..........CH CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddeke..........dd 83  
                      +rLe+lGDavlkl+++ +l++++p +heg+l++++   vsn++l   + +  l+++l + e +  r w++     s +++           + 
      CDO68911.1  950 QRLETLGDAVLKLLTVVHLYNKFPHRHEGQLDAMKRISVSNRTLLSRGIERCLERHLSS-ENQSIRLWRY----ISPSDELfsprprrcatRH 1037
                      7***********************************************99999999995.5555555555....3333333222222344455 PP

                      CTSHHHHHHHHHHHHHHHHHCT CS
  Ribonuclease_3   84 dadkvladvvEAliGaiyldsg 105 
                        +k+++d++EA++Ga + ++g
      CDO68911.1 1038 FPRKSVQDCMEAILGASFATGG 1059
                      5***************998765 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 1.3e-21
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHH.CTTCHCCHCHH.................HHCCSTT......CH CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlak.klglpkflrasefdpprnwlppgy...klsddeke......dd 83  
                      +rLeflGDa +++++t+yl++++p+a +g+ls +rs+ v++ +la la  +lgl+++l  ++ +++  +   +      s++  e      + 
      CDO68911.1 1132 QRLEFLGDALIDMVVTDYLYNKFPEATSGQLSWARSRAVCAPALAVLAVkRLGLHQLLLINNVELSMAIARYVPvleGISEE--EiilhgwKH 1222
                      7********************************************9987699******988887777766655454333333..245777777 PP

                      CTSHHHHHHHHHHHHHHHHHC CS
  Ribonuclease_3   84 dadkvladvvEAliGaiylds 104 
                      d +k l+dv+E+++Ga+++d+
      CDO68911.1 1223 DPPKALSDVFESVMGALLVDC 1243
                      8*******************9 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.5e-09   2.2e-05      20     116 ..     947    1063 ..     931    1067 .. 0.65
   2 !   49.5   0.0   1.7e-16   4.3e-13       3      81 ..    1112    1197 ..    1110    1260 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.5e-09
  Ribonucleas_3_3   20 ghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrl..................rkgeeetegsgr 92  
                        +N+rLe LGdavLkl+++ +l++k+ + +eg+l  +++  vs+++l   ++e  L+++l                    +  + +  +++ 
       CDO68911.1  947 FNNQRLETLGDAVLKLLTVVHLYNKFPHrHEGQLDAMKRISVSNRTLLSRGIERCLERHLSSenqsirlwryispsdelfSPRPRRCATRHF 1038
                       38**************9999998886554888877777767777766555555554444433333333344444477777444444444444 PP

  Ribonucleas_3_3   93 ek.vladaleAliGAiyldkgaeva 116 
                        +  + d++eA++GA + ++g++ a
       CDO68911.1 1039 PRkSVQDCMEAILGASFATGGIDMA 1063
                       3335689999999999999998877 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 1.7e-16
  Ribonucleas_3_3    3 elleqaltHkSfangrkghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiA.kelgLgkvlrl.....r 81  
                       +ll++a+tH Sf +  +++++rLefLGda+++++v++yl++k+ +  +g+l+  r+  v+ ++la +A k+lgL ++l++     +
       CDO68911.1 1112 QLLLEAITHPSFGSMDSSSYQRLEFLGDALIDMVVTDYLYNKFPEaTSGQLSWARSRAVCAPALAVLAvKRLGLHQLLLInnvelS 1197
                       699*************************************9976648999***************999678999999988444430 PP

>> Dicer_dimer  Dicer dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.5e-19   3.9e-16       1      90 [.     546     631 ..     546     633 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.5e-19
  Dicer_dimer   1 aislLnrycatlpsdeytd.lrpeyevkevedkergkfqaevtLPsnsp....lrkiegepmstkklAkrsaAfeackeLhkaglLddhLlPlsk 90 
                  ai lLn+ c+ +p+d++t  + p+y+           f+a++ LPs++p    l   eg++ ++k++Akr+aAf a+k+Lh ++ +dd+LlP+++
   CDO68911.1 546 AIGLLNHLCSLIPRDKFTPnHVPTYSG---------DFTATIHLPSSLPlpadLLVYEGPTKRSKREAKRAAAFVAVKALHTLNVFDDYLLPTKS 631
                  799*************99855677665.........799**********998878899**********************************987 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.3e-17   3.5e-14       3     169 ..      17     177 ..      15     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.3e-17
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET..TSSHHHHHHHHH..TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx..xx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig..gvaardqlskld..ng 97 
                 +Q+e++  +  +g+v++a +TGsGKT + +  ++++v+ ++  +g+ +++++P  +L++q+ + + k +    lrv  + g   ++  d  s  +  ++
  CDO68911.1  17 YQEEIFVRAQ-QGNVIAALDTGSGKTYI-STLLIKWVAARDVGKGKITVFLVPKVALVQQQGEFIAKQTT---LRVRQFSGatAHDMGDRESWKRefED 110
                 6888877776.66*************99.6667789988888888899***************9988888...77776655222222222222222255 PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                 +d++v+t + +++ll+  +  +++v+++V+DE++   ++     +n i+++  qi  +++ +  +  ++A +
  CDO68911.1 111 ADVFVMTAQIFLNLLTHSHWCMNKVSLIVFDECHHTRKN---HAYNGIMREYYQIPVETRPK--IFGMTASP 177
                 ***************99999*****************99...55555555555555554434..77777765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   9.4e-17   2.4e-13      22     169 ..      25     177 ..       9     178 .. 0.72

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 9.4e-17
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EEEEESSHHHHHHHHHHG........GGGTGG....GEEEESSS-B--.......-SEEEEE CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee..kflflvprkslleqtleef........kkflseaykeigkkvsgdkkkakekdstnkkilvtt 110
                  ++ +++ ++ TG+GKT++++ li+ ++     +   ++flvp+ +l++q  e +        ++f+  ++++      gd+++  +++ ++++++v+t
  CDO68911.1  25 AQQGNVIAALDTGSGKTYISTLLIKWVAARDVGKgkITVFLVPKVALVQQQGEFIakqttlrvRQFSGATAHD-----MGDRES-WKREFEDADVFVMT 117
                 56779999************99998776654433459***********9988655422222224444433332.....222222.24555788****** PP

                 HHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHH.HHT---......SEEEEEESS- CS
      ResIII 111 iqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswrei.lekfke......avllglTATp 169
                  q + + +     ++ +   ++  +i++DE+H+++++++++ i  e++ +       +++g+TA p
  CDO68911.1 118 AQIFLNLL-----THSHWCMNKVSLIVFDECHHTRKNHAYNGImREYY-QipvetrPKIFGMTASP 177
                 ********.....88999999999*************99999953333.22444459*******88 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   3.2e-06       6      84 ..     361     456 ..     356     470 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
                 HHHHH.HHTTTTSEEEEEESSHH.......HHHH....HHHHHHHT....TSTEEEEST.TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTT CS
  Helicase_C   6 llell.kleeeggkilifvntid.......rlek....vklllekk....gikvavlhg.elpqnereeileqfnkgesdvLiatdvaerGidipk 84 
                 l e l ++     +++ifv+++        +l++     ++++ ++    g  +a+  +  + +++++++++ f++ +++vL+at+vae+G+d+p 
  CDO68911.1 361 LAETLfDRYTASFQCIIFVEQRHiaaclagMLSRipliSHVIRAEQlvghGRDAAKARSkGMGTRNQQDTVRLFRERQINVLVATSVAEEGLDFPH 456
                 5555556667777899999999976544432222222212222222344445555544434*********************************96 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-06    0.0028      27     160 ..      36     180 ..      15     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
   SWI2_SNF2  27 qGSGKsltmvflakklleeelknpkv.vvvtDRkdLdkQlsktfaka........geekpkqaesrkeLkellekesekiifttiqKfeeeekeklevl 116
                 +GSGK++ +++l k+++++++ + k+ v+++ +  L +Q  + +ak         + ++++ + +r++ k+++  e++++++ t q f +  ++++ ++
  CDO68911.1  36 TGSGKTYISTLLIKWVAARDVGKGKItVFLVPKVALVQQQGEFIAKQttlrvrqfSGATAHDMGDRESWKREF--EDADVFVMTAQIFLNLLTHSHWCM 132
                 8****************97665544426677788887776665555423333322456667888888888888..578999999999975544344555 PP

   SWI2_SNF2 117 sereniivlvDEaHRsqyg.elakklrkalp.....naafigFTGTPilk 160
                 ++ +  ++++DE+H ++++  ++  +r+  +     + +++g+T  Pi +
  CDO68911.1 133 NKVS--LIVFDECHHTRKNhAYNGIMREYYQipvetRPKIFGMTASPIWN 180
                 5554..8899******8874455556654431122245788999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 9697.87
//
Query:       CDO68912.1  [L=644]
Description: hypothetical protein BN946_scf185000.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-08   32.2   0.0    9.2e-08   31.3   0.0    1.3  1  Phosducin   Phosducin
  ------ inclusion threshold ------
       0.13   12.4   1.8       0.32   11.1   1.8    1.7  1  PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimeri
        1.1    9.7   3.3         56    4.3   0.1    3.4  3  DUF3140     Protein of unknown function (DUF3140)


Domain annotation for each model (and alignments):
>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.5e-11   9.2e-08      88     216 ..      52     185 ..      38     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.5e-11
                 HHHHHHTT----HHHHHHHHHHHHHHHHHH..H------.....-SEEE--SHHHHHHHHHSS-TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-TTSE CS
   Phosducin  88 keyelidkdkddeeflrkyrkqrmdemrqk..lskgprf.....kfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvk 179
                 +e      d + e +l+  r+++++e ++    ++g  +     ++  e+    ++ +  d +qk t +vv +y+dg++ ++     +  la  +p  k
  CDO68912.1  52 RELAAEAPDDETERILEVLRRRKLQEAKKMemARFGRVYpisreDYTREVTDASNINEEGDEQQKGTGVVVFLYKDGIPASDRAAQHVQILAQRHPHTK 150
                 4444444566778899999**999998753112344433111113344566666777777889************************************ PP

                 EEEEEHHHH--TTSS-TTT-SEEEEEETTEEEEEETT CS
   Phosducin 180 fckvkasvigasdrfsrdvlpallvykagellsnfvr 216
                 f  +   +      +    lp +++y+ ge+l+++v 
  CDO68912.1 151 FVSIVGDKC--IPNLPDARLPMFIIYRKGEVLNQLVA 185
                 *99977664..45678889*************99886 PP

>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8   5.4e-05      0.32       7      23 ..     346     362 ..     339     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.4e-05
  PNP_phzG_C   7 vPeeiEFWqgrpsRlHd 23 
                  P+eiEFW +r+++ H+
  CDO68912.1 346 EPDEIEFWRQRQDKWHQ 362
                 6*************996 PP

>> DUF3140  Protein of unknown function (DUF3140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1     6e+02      34      53 ..      57      76 ..      39     138 .. 0.77
   2 ?    4.3   0.1    0.0094        56      51      86 ..     229     264 ..     225     269 .. 0.78
   3 ?    2.8   0.1     0.028   1.7e+02      13      43 ..     593     622 ..     589     628 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
     DUF3140 34 svghesGrkiveilrkkkad 53
                ++ +++ ++i+e+lr++k +
  CDO68912.1 57 EAPDDETERILEVLRRRKLQ 76
                55667889999999977643 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0094
     DUF3140  51 kadltdddlehmrkVvgyvkrhlaqeepegkvedtk 86 
                  +dl+dd  +hmr     v+++  ++ +++k ed++
  CDO68912.1 229 IDDLDDDPSSHMRSAATGVNAKAPKNIRSKKEEDSD 264
                 589**************9999986655555666655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.028
     DUF3140  13 LeeWLkteeSkevgekkdggesvghesGrki 43 
                 L+++ + ++S+++g++ + +e+ g + G+ i
  CDO68912.1 593 LHQFVEGSSSSHRGQS-GYPENHGRQAGESI 622
                 889999999*****97.55*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4737.40
//
Query:       CDO68913.1  [L=186]
Description: hypothetical protein BN946_scf185000.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-49  165.5   0.2      9e-49  165.2   0.2    1.1  1  Ras       Ras family
    4.2e-22   78.6   0.1      7e-22   77.9   0.1    1.3  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    9.8e-08   31.6   0.0    1.4e-07   31.2   0.0    1.2  1  Arf       ADP-ribosylation factor family
     0.0017   17.9   0.1     0.0026   17.3   0.1    1.3  1  GTP_EFTU  Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.2     2e-52     9e-49      27     161 ..      12     146 ..       5     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 2e-52
                 SCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HH CS
         Ras  27 eyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravste 125
                 + +sTigv+f t++i+vdgk++k +iwDTAGqe++++++ +yyr+a g+llvydi++++++ nv++w++e++++a++n++i+LvGnK+Dl++ rav te
  CDO68913.1  12 KTKSTIGVEFATRSINVDGKTLKAQIWDTAGQERYRAITAAYYRGAVGALLVYDISKHATYVNVTRWLKELRDHADSNIVIMLVGNKSDLKHLRAVPTE 110
                 6789*********************************************************************************************** PP

                 HHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 126 egeelakelglkfletSAktnenveeafeellreil 161
                 e++++a e+gl f+etSA ++ nve af+++l++i+
  CDO68913.1 111 EAKAFAAENGLSFIETSALDASNVEAAFQTILTDIY 146
                 *******************************99886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.1   1.6e-25     7e-22      27     119 ..      12     100 ..       5     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.6e-25
                 EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHHHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  27 kekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlkeWlkelkkvagks.pvilvgnkiD 119
                 k+kstigv+f+t+++ +++g       k++k +iWDtaGqer+r+++  y+r+a  a+lvyd     ++ n+ +Wlkel+++a+++ +++lvgnk D
  CDO68913.1  12 KTKSTIGVEFATRSI-NVDG-------KTLKAQIWDTAGQERYRAITAAYYRGAVGALLVYDiskHATYVNVTRWLKELRDHADSNiVIMLVGNKSD 100
                 689********9987.5555.......67899******************************63233456999*********997626679****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     3e-11   1.4e-07      42     144 ..      13     120 ..       6     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3e-11
                 CSSSSSEE..EEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTT..SS-HH CS
         Arf  42 tvPTigfn..veelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpe..alsee 134
                 t+ Tig +  ++++++  k+lk ++wD  Gqe+ R +   Y++   + + v D +++    +  + Lk+l ++ + +++++++++NK Dl++  a+ +e
  CDO68913.1  13 TKSTIGVEfaTRSINVdgKTLKAQIWDTAGQERYRAITAAYYRGAVGALLVYDISKHATYVNVTRWLKELRDHAD-SNIVIMLVGNKSDLKHlrAVPTE 110
                 55566644004444435599*************************************************876665.67777888*****9852255666 PP

                 HHHHHTTGGG CS
         Arf 135 elrellglee 144
                 e ++  + + 
  CDO68913.1 111 EAKAFAAENG 120
                 6555544444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   5.7e-07    0.0026      55     190 ..      18     143 ..      11     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.7e-07
                 CSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHH.HHHHHH...HTTTEEEEEEESCGSTHHHHHHHHHHHHHH CS
    GTP_EFTU  55 TiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqtee.vlrlal...kegvpiivfiNKmDrlkaelkeiveevkqk 149
                  ++ a+ s++ ++k+ + ++ Dt G + +   + + +r + ga+lv d+++  +    +  l+ ++   + ++ i+++ NK D   + l+ +++e  + 
  CDO68913.1  18 GVEFATRSINVDGKTLKAQIWDTAGQERYRAITAAYYRGAVGALLVYDISKHATYVNVTrWLKELRdhaDSNIVIMLVGNKSDL--KHLRAVPTEEAKA 114
                 444455555557999**********************************988443333303333320003455577788****8..5677888888888 PP

                 HHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 150 lsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +         ++e+g    +++ +Sal++ +v++ ++++ +
  CDO68913.1 115 F---------AAENG---LSFIETSALDASNVEAAFQTILT 143
                 8.........34444...68999999999999877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1299.63
//
Query:       CDO68914.1  [L=123]
Description: hypothetical protein BN946_scf185000.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-32  110.6   0.1    4.1e-32  110.5   0.1    1.0  1  rhaM      L-rhamnose mutarotase


Domain annotation for each model (and alignments):
>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.1   2.3e-36   4.1e-32       1     107 [.       8     117 ..       8     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 2.3e-36
        rhaM   1 RyaqvlklkpeaieeYkklHaevwpevlealkeagirnysIyldeegntLfailev.gddeeadaaaaaadpkvqeWwalmaklqe..aapsaspakee 96 
                 R++q++klk e+++eY +lH++vwp vl+al +++i +ysI+++ + ++L+a++++ g+d++ad++  aadp++q+Ww+l++++qe   ++ a ++ e 
  CDO68914.1   8 RICQLIKLKHEHEQEYLALHRDVWPGVLAALARHHIADYSIFYHAPLHLLIATFKYtGADYAADMRGVAADPETQRWWKLTDDMQEslVEGAAGSGGEV 106
                 99************************************************************************************8834444445566 PP

        rhaM  97 ekwteleevFh 107
                  +w+++ evF+
  CDO68914.1 107 PWWQDVPEVFR 117
                 8*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.33s 00:00:00.92 Elapsed: 00:00:00.57
# Mc/sec: 651.49
//
Query:       CDO68915.1  [L=164]
Description: hypothetical protein BN946_scf185000.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-37  126.3   0.0    9.8e-37  126.0   0.0    1.0  1  Ras       Ras family
    8.1e-10   39.0   0.0    1.2e-09   38.5   0.0    1.2  1  Roc       Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.026   15.0   0.9       0.25   11.8   0.1    2.4  2  Rnk_N     Rnk N-terminus
       0.04   14.2   0.0      0.059   13.6   0.0    1.3  1  PET117    PET assembly of cytochrome c oxidase, mitochondrial


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   2.2e-40   9.8e-37      32     159 ..       9     148 ..       2     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 2.2e-40
                 SSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHHHHSTTTSEEEEEEETTTGGG........... CS
         Ras  32 igvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDlee........... 118
                 + +d+y  ++++ +  ++l ++DTAGqe++++lr+l+y +++++l+++++ts +sfenvk kw+ e++++++  vp+++vG+++Dl++           
  CDO68915.1   9 V-FDNYAVTVMIGDDPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKeKWFPEVHHHCP-GVPCLIVGTQIDLRDdpqvleklarq 105
                 5.99********************************************************9***********.7************************* PP

                 .G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 119 .kravsteegeelakelg.lkfletSAktnenveeafeellre 159
                  +r ++ ++ge+la+elg +k++e+SA t+++++++f+e++ +
  CDO68915.1 106 kQRPITPDQGERLARELGaVKYVECSALTQKGLKNVFDEAIVA 148
                 **************************************98765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.6e-13   1.2e-09      56     120 .]      24      92 ..       6      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.6e-13
                 EEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH.HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  56 vklniWDtaGqerfrslhplylreaalailvyd...srssenl.keWlkelkkvagkspvilvgnkiDl 120
                 ++l ++DtaGqe+++ l+pl + + +++++++      s+en+ ++W+ e++++++  p+++vg++iDl
  CDO68915.1  24 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSvtsPASFENVkEKWFPEVHHHCPGVPCLIVGTQIDL 92 
                 68999*************************9985434467887368*********************95 PP

>> Rnk_N  Rnk N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.12   5.3e+02       8      16 ..      35      43 ..      33      43 .. 0.83
   2 ?   11.8   0.1   5.6e-05      0.25       9      35 ..      95     122 ..      93     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
                HHHHHHHHH CS
       Rnk_N  8 lDleRLeaL 16
                +D++RL+ L
  CDO68915.1 35 EDYDRLRPL 43
                7*****865 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.6e-05
                 HHHHHHHHHHCTTTT.SSTTHHHHHHHH CS
       Rnk_N   9 DleRLeaLldsladr.dppaaeaLeaEL 35 
                 D + Le+L+ + ++  +p+ +e+L++EL
  CDO68915.1  95 DPQVLEKLARQKQRPiTPDQGERLAREL 122
                 6678******998888***********9 PP

>> PET117  PET assembly of cytochrome c oxidase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.059      36      69 ..      92     125 ..      72     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
      PET117  36 irDaerqaeKerkrkenkaeleeqkelrkkyekv 69 
                 +rD++++ eK++ +k+++ ++++ ++l++++ +v
  CDO68915.1  92 LRDDPQVLEKLARQKQRPITPDQGERLARELGAV 125
                 8*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1070.55
//
Query:       CDO68916.1  [L=164]
Description: hypothetical protein BN946_scf185000.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-46  157.7   0.1    1.3e-46  157.5   0.1    1.1  1  DUF1077   Protein of unknown function (DUF1077)


Domain annotation for each model (and alignments):
>> DUF1077  Protein of unknown function (DUF1077)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.1   7.1e-51   1.3e-46       4     117 ..      37     154 ..      34     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 7.1e-51
     DUF1077   4 eekeelkakkaweialapakslpmnlfmlYmsGnslqifsimmvlmllvnpikallsvnkaFkkleseksks....klllqklvyvllqllllalglyk 98 
                 ++ eelkak+aw++a++pakslpm++fmlYmsG ++qifs+ +v+mll++p+k+l+s+n+aF++++ ++s+     +l lqk++y++++ll+lalgl+k
  CDO68916.1  37 ASYEELKAKRAWDLAFSPAKSLPMQAFMLYMSGGGVQIFSMGIVFMLLSSPFKNLASINSAFAPFAPASSSPkslgTLSLQKIAYIFCNLLTLALGLWK 135
                 67899*************************************************************97773334548999******************* PP

     DUF1077  99 lnsmGLLPttssDwlafee 117
                 ++smGLLPt ++Dwlafe+
  CDO68916.1 136 CRSMGLLPTGTGDWLAFET 154
                 *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1201.54
//
Query:       CDO68917.1  [L=1377]
Description: hypothetical protein BN946_scf185000.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-41  140.6   6.3    2.5e-40  138.8   6.3    2.0  1  Senescence      Senescence-associated protein
    1.4e-28   99.2   0.4    2.4e-28   98.4   0.4    1.4  1  MA3             MA3 domain
  ------ inclusion threshold ------
      0.079   13.4  11.7       0.08   13.4   6.0    2.5  2  MFMR_assoc      Disordered region downstream of MFMR
        7.3    6.2  13.1         17    5.0  13.1    1.5  1  DUF4636         Domain of unknown function (DUF4636)


Domain annotation for each model (and alignments):
>> Senescence  Senescence-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   6.3   5.5e-44   2.5e-40       1     183 []    1059    1338 ..    1059    1338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 5.5e-44
  Senescence    1 ivkgadvisrgivktsnllakgiqkgaeyyiskskps............ekP.........lefsprtrkalrkvrkvsgqaakvsaktvggvgdaa 76  
                  i+k+a+ is++i++++++l kg++++a yyis+s+ps            ++P         l   prt++ l ++ ++sgqa+kvs+ktvg v +++
  CDO68917.1 1059 ITKSATFISQAITSSTSMLLKGLTSAAHYYISHSTPSphasgsatpnapRDPnavpprallLLSHPRTHATLSRAYAISGQAVKVSQKTVGIVENMI 1155
                  89***********************************99999977766633355556666555577******************************* PP

  Senescence   77 grvgaavaksvkkkgtk.................................ss............................................. 95  
                  +r+ ++  k    ++++                                 +                                              
  CDO68917.1 1156 KRAVGGRDKP---TTGTlalaprtvppapsapaaevsssvamssaslvseEPppypgsstshwxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 1249
                  **88888886...333356688777777777776666666665555555500555555566666677777777778888888888899999999999 PP

  Senescence   96 .eeeskpgksekktaagevlnasldafstvldgleeaakqllsatsdattkvvehkYGeeAgevtrdvletagNvglvyvdvrgvgrka 183 
                         + ++++  ++++  + l ++++vl +++++ak++++a+s+++t++v hkYG+eAg++++ +++ta+Nv+lvy+d++g++r+a
  CDO68917.1 1250 xXXXXXXPPPPPPPRPLKTTEKLLLSANLVLATVDDSAKRVFDAGSTQITAAVAHKYGPEAGKSAHLATHTARNVTLVYIDMQGLARRA 1338
                  955555555678899************************************************************************98 PP

>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.4   5.3e-32   2.4e-28       1     112 [.     431     536 ..     431     537 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 5.3e-32
                 HHHHHHHHHHSSS...SHHHHHHHHHHTT--.TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH...HHHH CS
         MA3   1 lrrkifliieeylssgdyeeavsklekLklp.kqeheivkillecaleesktyneyygllleklceknlilkkqfekgfwdvlesledleldipeairn 98 
                 lrr i+l+i+ +l    yeeav+kl+k +++  qe e++k+++ec+ +e ++y+ +ygl+ e++c+ n+++ + fe++f d++e+++++e++   ++rn
  CDO68917.1 431 LRRVIYLTIMNAL---NYEEAVHKLLKVQIKeGQEIELCKMIIECCSQE-RSYSTFYGLIGERFCRLNRVWFDCFEQAFRDYYETIHRYETN---RLRN 522
                 69***********...*********************************.******************************************...**** PP

                 HHHHHHHHHHTTSS CS
         MA3  99 laefvarlisediL 112
                 +a+f+++l+++d++
  CDO68917.1 523 IARFFGHLLATDAI 536
                 ***********997 PP

>> MFMR_assoc  Disordered region downstream of MFMR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3     0.044     2e+02      45      83 ..     389     427 ..     378     443 .. 0.58
   2 ?   13.4   6.0   1.8e-05      0.08      18      93 ..     630     710 ..     623     738 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.044
  MFMR_assoc  45 segssegSDansqndsqrkkkrsqes.tsqnggdakasqn 83 
                  egss++ D++s +++++++++ +e    + g ++++++n
  CDO68917.1 389 GEGSSDE-DEESGSEEESEEDEDEEAaEEKEGIEDRTQTN 427
                 5666665.44444444444444444423334445555554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.8e-05
  MFMR_assoc  18 itgknneegkssegsangalsqsgesesegssegSDansqndsqrkkkrsqes....tsqnggdakasqngaekap.qtkv 93 
                 i+++  +  + ++ s+++  s s +  s+ ss +SD  s +ds   ++rs+++    +s+  + +++ ++++++++  t +
  CDO68917.1 630 IMEQRRAMLEAESSSSDSSSSDSDSDDSDDSSSDSDSSSVSDSSDDSRRSRSPrrrsPSPRRKRDRSDSRRGNQSAtGTPL 710
                 55566666788899999999999999***********99999999888888876666555555555544444444324444 PP

>> DUF4636  Domain of unknown function (DUF4636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.1    0.0038        17     123     187 ..     630     694 ..     625     705 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0038
     DUF4636 123 yleqrrarrhsqlnqvnqiqkdsdtteldseesnsgasswkesesehhpspasikrrkiaqrqrn 187
                  +eqrra+ +++ +  +    dsd+ + d   s+s++ss  +s  + + s +  +r    +r+r+
  CDO68917.1 630 IMEQRRAMLEAESSSSDSSSSDSDSDDSDDSSSDSDSSSVSDSSDDSRRSRSPRRRSPSPRRKRD 694
                 58*****************************************9999888766555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1251  (0.0697752); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.49
# Mc/sec: 8464.59
//
Query:       CDO68918.1  [L=112]
Description: hypothetical protein BN946_scf185000.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-16   58.5   0.4    7.9e-16   57.8   0.4    1.4  1  BLACT_WH  Beta-lactamase associated winged helix domain


Domain annotation for each model (and alignments):
>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.4   4.4e-20   7.9e-16       1      47 []      63     107 ..      63     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4.4e-20
    BLACT_WH   1 TveelVkviYkdvpeslhpaAergvlahLeKLeeeGkVkregdkgkW 47 
                 T+e++V++iY+++p++l+ +A+++  + L+KL +eGkVk+++d   W
  CDO68918.1  63 TTEAIVANIYAKYPRELWAPAAHSTELALNKLVNEGKVKKVDD--AW 107
                 99****************************************6..88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 765.01
//
Query:       CDO68919.1  [L=578]
Description: hypothetical protein BN946_scf185000.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-20   73.8  16.4    5.8e-09   36.4   0.6    5.4  5  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    3.7e-08   33.3  14.5      0.013   15.7   0.0    6.1  6  FG-GAP           FG-GAP repeat
     0.0017   17.7   3.8        1.1    8.6   0.0    5.0  6  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
      0.003   17.7   3.5         35    4.7   0.0    5.1  5  Dockerin_1       Dockerin type I domain
  ------ inclusion threshold ------
      0.051   13.2   0.1      0.081   12.5   0.1    1.2  1  GTP1_OBG         GTP1/OBG


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.7e-05      0.06       1      24 [.      14      39 ..       2      57 .. 0.66
   2 !   20.7   0.2   1.3e-07   0.00045       1      60 [.      59     133 ..      59     134 .. 0.75
   3 !   36.4   0.6   1.6e-12   5.8e-09       1      60 [.     123     185 ..     123     186 .. 0.86
   4 !    9.6   0.1   0.00037       1.3      45      60 ..     291     306 ..     253     307 .. 0.85
   5 !   21.7   2.2   6.3e-08   0.00023       1      61 []     296     380 ..     296     380 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
        VCBS  1 DldgDGrlDlvvan.d.gglrvyrnn 24
                D++gD +lDl+ ++ d ++l vy+++
  CDO68919.1 14 DFNGDQFLDLLTLGsDhQTLSVYLWD 39
                66666666666664333556666665 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.3e-07
        VCBS   1 DldgDGrlDlvva.....ndgglrvyrnngdGt......ftdvtktslgg....sgggtgvavgDlDgDGdlDll 60 
                 D++gD + Dl+ a     + ++++v+ n  + +      ft v +  +gg      ++++ a++Dl+gD  +D++
  CDO68919.1  59 DINGDLKIDLFGApsqssSASTFNVWQNVWNASatqsdiFTIVDPKLSGGaqckLANPHSNAAVDLNGDCLADMF 133
                 9************87764346688877775554333444666666544447999999****************98 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 1.6e-12
        VCBS   1 DldgDGrlDlvva.....ndgglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 Dl+gD ++D++++     ++ ++++++nn+d  f  +++ +l+++    ++ ++D+D+DG lD+l
  CDO68919.1 123 DLNGDCLADMFLVcedrpGNKYFQIWINNKDDGFALAQQGPLPSG--TQAISFADIDRDGTLDML 185
                 9***********999765567799********9*99877666655..678*************97 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00037
        VCBS  45 gvavgDlDgDGdlDll 60 
                  + +gD++ DG +D+l
  CDO68919.1 291 PIKLGDVNQDGFPDIL 306
                 478999******9998 PP

  == domain 5  score: 21.7 bits;  conditional E-value: 6.3e-08
        VCBS   1 DldgDGrlDlvva.......ndgg...............lrvyrnngdGt..ftdvtkt..slggsgggtgvavgDlDgDGdlDllv 61 
                 D+++DG++D++++          +               +  +  ng+G+  ++ + k   +l g +++++va+ DlD DG lD++v
  CDO68919.1 296 DVNQDGFPDILAIvvtgsssH--RsrtpqlalsvscaggVAGCGTNGNGRrgWQMIKKDvgPLVGIQDARSVAFLDLDEDGTLDMMV 380
                 9**********9989876540..24555555443333335555555666544554444433555599999**************987 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.4   8.1e-05      0.29       4      20 ..       9      25 ..       7      36 .. 0.91
   2 ?   -1.6   0.1      0.87   3.1e+03       9      13 ..      59      63 ..      57      63 .. 0.90
   3 ?    2.9   0.1     0.034   1.2e+02       6      16 ..     120     130 ..     118     142 .. 0.84
   4 !    5.1   0.0    0.0071        25       4      19 ..     170     185 ..     167     198 .. 0.85
   5 !   15.7   0.0   3.5e-06     0.013       7      21 ..     294     308 ..     292     318 .. 0.86
   6 ?    3.5   0.1     0.022        79       4      19 ..     364     379 ..     362     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.1e-05
                SEEEESTSSSSS-EEEE CS
      FG-GAP  4 slavgDvNGDGyaDLav 20
                ++a gD+NGD + DL++
  CDO68919.1  9 VVAFGDFNGDQFLDLLT 25
                799************85 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.87
                STSSS CS
      FG-GAP  9 DvNGD 13
                D+NGD
  CDO68919.1 59 DINGD 63
                ****9 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.034
                 EEESTSSSSS- CS
      FG-GAP   6 avgDvNGDGya 16 
                 a++D+NGD +a
  CDO68919.1 120 AAVDLNGDCLA 130
                 689*****555 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0071
                 SEEEESTSSSSS-EEE CS
      FG-GAP   4 slavgDvNGDGyaDLa 19 
                 +++ +D++ DG  D +
  CDO68919.1 170 AISFADIDRDGTLDML 185
                 5789*******99965 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 3.5e-06
                 EESTSSSSS-EEEEE CS
      FG-GAP   7 vgDvNGDGyaDLavG 21 
                 +gDvN+DG++D++  
  CDO68919.1 294 LGDVNQDGFPDILAI 308
                 69**********976 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.022
                 SEEEESTSSSSS-EEE CS
      FG-GAP   4 slavgDvNGDGyaDLa 19 
                 s+a  D++ DG  D  
  CDO68919.1 364 SVAFLDLDEDGTLDMM 379
                 8999*******99965 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0003       1.1      31      57 ..      10      36 ..       2      51 .. 0.83
   2 ?   -2.8   0.0      0.98   3.5e+03      34      53 ..      58      80 ..      57      96 .. 0.71
   3 ?    1.1   0.0     0.063   2.3e+02      32      47 ..     120     135 ..      93     147 .. 0.79
   4 ?    3.1   0.0     0.015        54      30      51 ..     170     191 ..     157     208 .. 0.82
   5 ?   -0.4   0.0      0.17   6.2e+02      31      48 ..     292     309 ..     277     325 .. 0.78
   6 ?   -0.5   0.0      0.19   6.8e+02      31      50 ..     365     384 ..     358     411 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0003
  TcdB_toxin_midN 31 lslaDldGdGladlvltipsagtgavq 57
                     + ++D++Gd ++dl+++++  +t  v+
       CDO68919.1 10 VAFGDFNGDQFLDLLTLGSDHQTLSVY 36
                     5789****************9998886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.98
  TcdB_toxin_midN 34 aDldGdGladlvltipsag...t 53
                     +D++Gd + dl  + +++    t
       CDO68919.1 58 MDINGDLKIDLFGAPSQSSsasT 80
                     59999999998776665553343 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.063
  TcdB_toxin_midN  32 slaDldGdGladlvlt 47 
                       ++Dl+Gd lad+ l 
       CDO68919.1 120 AAVDLNGDCLADMFLV 135
                      579*********8765 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.015
  TcdB_toxin_midN  30 nlslaDldGdGladlvltipsa 51 
                      ++s+aD+d dG++d++ +  s+
       CDO68919.1 170 AISFADIDRDGTLDMLFATCSS 191
                      589***********99876554 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.17
  TcdB_toxin_midN  31 lslaDldGdGladlvlti 48 
                      ++l+D++ dG++d++  +
       CDO68919.1 292 IKLGDVNQDGFPDILAIV 309
                      6899*********87544 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.19
  TcdB_toxin_midN  31 lslaDldGdGladlvltips 50 
                      + ++Dld dG++d++++  +
       CDO68919.1 365 VAFLDLDEDGTLDMMVQRTG 384
                      6799*********8776544 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.018        66      23      46 ..      38      67 ..      12      69 .. 0.64
   2 ?   -1.0   0.0      0.56     2e+03      31      42 ..     116     127 ..     109     131 .. 0.83
   3 !    4.7   0.0    0.0096        35      24      48 ..     161     185 ..     143     187 .. 0.82
   4 ?    4.4   0.0     0.012        44      26      43 ..     284     301 ..     276     306 .. 0.77
   5 ?   -0.1   0.0      0.31   1.1e+03      30      47 ..     361     378 ..     347     379 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
                T......SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1 23 n......qregqssssngkaaDvNgDGrvn 46
                        + ++s s ++   D+NgD +++
  CDO68919.1 38 WdhdlnpIQAPPSLSAQPIPMDINGDLKID 67
                355555655677888888889999999997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.56
                 CCCHGGGSTT-S CS
  Dockerin_1  31 ssngkaaDvNgD 42 
                 +  ++a D+NgD
  CDO68919.1 116 PHSNAAVDLNGD 127
                 677899999999 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0096
                 SSEBTTSCCCHGGGSTT-SSCESHH CS
  Dockerin_1  24 qregqssssngkaaDvNgDGrvnal 48 
                 q++ +s ++   +aD+++DG+ ++l
  CDO68919.1 161 QGPLPSGTQAISFADIDRDGTLDML 185
                 566788899999********98876 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.012
                 EBTTSCCCHGGGSTT-SS CS
  Dockerin_1  26 egqssssngkaaDvNgDG 43 
                 ++++ +++ k  DvN+DG
  CDO68919.1 284 QNPPIPIPIKLGDVNQDG 301
                 567788888889999998 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.31
                 SCCCHGGGSTT-SSCESH CS
  Dockerin_1  30 sssngkaaDvNgDGrvna 47 
                 +    +++D+++DG+ ++
  CDO68919.1 361 DARSVAFLDLDEDGTLDM 378
                 556678899999998765 PP

>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.3e-05     0.081      62     131 ..     327     397 ..     308     415 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
                 EE-------BTTTB-------EEEEESTTEEEEETTTTE.EEEEE-STT-.EEEEE-----EE-GGGC-CSS CS
    GTP1_OBG  62 ikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetge.vladltedge.evlvakGGkgGkGnaafksst 131
                 ++   G  G g+n +G++g +++    vg +v  ++ ++  ++dl+edg+  ++v + G+ G+Gn  f +++
  CDO68919.1 327 VSCAGGVAGCGTNGNGRRGWQMIK-KDVGPLVGIQDARSvAFLDLDEDGTlDMMVQRTGNQGQGNILFIQNN 397
                 55677999***********99765.467777765555541578****98747999***********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3711.40
//
Query:       CDO68920.1  [L=352]
Description: hypothetical protein BN946_scf185000.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2450.84
//
Query:       CDO68921.1  [L=300]
Description: hypothetical protein BN946_scf185000.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2095.98
//
Query:       CDO68922.1  [L=200]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   10.4   0.0       0.27   10.0   0.0    1.2  1  CRF-BP    Corticotropin-releasing factor binding protein (CRF


Domain annotation for each model (and alignments):
>> CRF-BP  Corticotropin-releasing factor binding protein (CRF-BP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.5e-05      0.27      88     135 ..      60     107 ..      50     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 1.5e-05
      CRF-BP  88 epeelisieydlvsidcsggdflkvfdGwilkGekfPssqdhplplle 135
                   +e+   + ++++  c+ +  +  fd w++ Ge  P+++d +  l  
  CDO68922.1  60 SQDEVSRTNQQHIQAACNEASSISSFDLWVIVGEWTPAATDCAKYLNG 107
                 5577888889999**************************998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1380.29
//
Query:       CDO68923.1  [L=210]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   47.2   0.3    2.4e-12   46.9   0.3    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.3   1.3e-16   2.4e-12       6     123 ..      66     190 ..      57     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.3e-16
                 EEEEGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEE.CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS................TT CS
   Cellulase   6 kpvnlkglstswgnpyttkalidevkdagfntvRlpvs.wgelvenapdykvdenslerveevvkyakenglyvildiHse................eg 87 
                  +++l+ l+ +w +  t++++i  +++ag n+vR+p++ w   v++++ y   + +l  ++++v +a ++g++vi+d+H                  ++
  CDO68923.1  66 RNTALSVLQNHWNTWITEQDFI-DIANAGLNHVRIPIGyWAFEVGPGEPY--ISGQLPYLQKAVGWARNHGIKVIVDLHGApgsqngfdnsghrvsfPQ 161
                 5666777778887765666666.58889*********9565566555555..7889************************9888777777776666666 PP

                 TCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTE CS
   Cellulase  88 wltkadgnssedtaeeffkklwtqiAerykkndevv 123
                 w   ++ +++ ++     +++++qiA+ + ++++vv
  CDO68923.1 162 W---HSNSTNVAR----TDAIIKQIASLFINDQDVV 190
                 6...433444444....4455666*****9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1534.30
//
Query:       CDO68924.1  [L=241]
Description: hypothetical protein BN946_scf185000.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1686.51
//
Query:       CDO68925.1  [L=317]
Description: hypothetical protein BN946_scf185000.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-37  125.1   0.0    4.6e-20   71.2   0.0    2.2  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.015   14.9   0.0        2.6    7.6   0.0    2.2  2  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
      0.016   14.9   0.2       0.61    9.8   0.1    2.3  2  OB_RNB    Ribonuclease B OB domain
      0.036   14.2   0.0       0.11   12.6   0.0    1.8  2  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0     1e-17   4.6e-14       1      70 []      14      84 ..      14      84 .. 0.98
   2 !   71.2   0.0     1e-23   4.6e-20       1      69 [.     101     171 ..     101     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1e-17
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70
                +++gnL + +t+  + el+ + Gp++++ l++d    +++g++f+eF ++edAe A + +n  kl g++++
  CDO68925.1 14 VYLGNLDERCTDALIWELMLQAGPVVNVHLPKDrISMTHQGYGFCEFLTEEDAEYACKIMNQIKLYGKPIR 84
                79******************************************************************986 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 1e-23
                 EEEESETTTSSHHHHHHHHHTTSCE.EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi.ksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf+gnL ++v+e+ L++ Fs fG + +++k+ rd  tgkskg++fV +++ e+ ++A+ea+ng+ l+++ +
  CDO68925.1 101 LFIGNLDENVDERLLYDTFSAFGMMaTTAKIARDpTTGKSKGYGFVSYTDFESSDAAIEAMNGQFLMNKAI 171
                 8************************9******************************************998 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00058       2.6      61      98 ..      50      87 ..      20     110 .. 0.79
   2 ?    5.0   0.0     0.004        18      62      98 ..     139     175 ..     112     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00058
       RRM_5 61 ktkketalvqmgdasaveravqHLnnaklfgkrleval 98
                 t +++ + +   + ++e a + +n +kl+gk+++v  
  CDO68925.1 50 MTHQGYGFCEFLTEEDAEYACKIMNQIKLYGKPIRVNK 87
                5777888888889999****************888753 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.004
       RRM_5  62 tkketalvqmgdasaveravqHLnnaklfgkrleval 98 
                   k++ +v   d  + + a++ +n++ l +k + v+ 
  CDO68925.1 139 KSKGYGFVSYTDFESSDAAIEAMNGQFLMNKAITVQY 175
                 5689999************************888764 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.025   1.1e+02       2      17 ..      47      62 ..      47      68 .. 0.78
   2 ?    9.8   0.1   0.00014      0.61       5      35 ..     138     169 ..     137     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.025
                EEEE-SSS-EEEEECT CS
      OB_RNB  2 tvrahkkGFGFlipde 17
                +++++ +G+GF +  +
  CDO68925.1 47 RISMTHQGYGFCEFLT 62
                578999*****98766 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
                 E-SSS-EEEEECT..TEEEEE-HHHHTTS-TT CS
      OB_RNB   5 ahkkGFGFlipde.gkeDifippeqmkkamhG 35 
                 + +kG+GF++  + +++D  i + + +  m++
  CDO68925.1 138 GKSKGYGFVSYTDfESSDAAIEAMNGQFLMNK 169
                 679*******9999*******99988888886 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   4.7e+03       4      35 ..      14      46 ..      12      67 .. 0.58
   2 ?   12.6   0.0   2.4e-05      0.11       4      68 ..     101     159 ..      98     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
       RRM_7  4 vFvGGlPiDiteeelkatfkefgkvl.vdwPkk 35
                v++G l    t++ +++ + + g+v+ v  Pk 
  CDO68925.1 14 VYLGNLDERCTDALIWELMLQAGPVVnVHLPKD 46
                566666666666666666666665432555554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.4e-05
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68 
                 +F+G l  +++e+ l++tf++fg ++    k a+ +++        kgy f+ ++d +s  a +e
  CDO68925.1 101 LFIGNLDENVDERLLYDTFSAFGMMATT-AKIARDPTTG-----KSKGYGFVSYTDFESSDAAIE 159
                 7**********************98754.2334443333.....247999999998877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2440.80
//
Query:       CDO68926.1  [L=69]
Description: hypothetical protein BN946_scf185000.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 482.30
//
Query:       CDO68927.1  [L=276]
Description: hypothetical protein BN946_scf185000.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-37  128.6  17.7    3.1e-37  128.2  17.2    1.5  1  Peptidase_M50B   Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2  17.2   1.7e-41   3.1e-37      50     198 ..      62     211 ..      40     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 1.7e-41
  Peptidase_M50B  50 sdesGvtvtrgpgglgqiltllaGYlgpallGlllillsasgkarl..llvllvllllvllllvrnlfglvlllllgallllvlllaedellefl 142
                     +de+G t ++g  g+++ +tl+aGYlg++++G++li ++++++a+   +l l++++l++l++ +rn+++++l+l++++l++l++++a   +l+f+
      CDO68927.1  62 ADEGGATRMSG--GIPW-ITLPAGYLGSSFIGAALITCGFDTNASKiaSLALAAFFLFTLWWARRNWLTWLLILGMSGLIVLFWFVAGGVALRFF 153
                     58*********..**96.7********************9988855124557778888888888******************************* PP

  Peptidase_M50B 143 llflgvflllgsvrdi.ddlirrkapesDasqlakltg.vpallwvvlwllvslafla 198
                     +lf+gv++++++++d+ dd++ rk++ sDas +a+++g +p+++w+vlw++ + af+a
      CDO68927.1 154 VLFIGVMSCMYVLWDViDDTVARKVNGSDASSFAEICGcCPSQVWGVLWFIQACAFFA 211
                     ***************66999******************889***********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1984.06
//
Query:       CDO68928.1  [L=1059]
Description: hypothetical protein BN946_scf185000.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-43  148.0   0.1    1.4e-20   74.2   0.0    3.9  2  ABC_tran      ABC transporter
    1.2e-18   68.0   0.7    2.9e-07   30.6   0.3    4.7  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.4e-14   52.1   1.0    0.00057   19.4   0.1    4.3  4  SMC_N         RecF/RecN/SMC N terminal domain
    1.2e-07   31.4   0.1      0.015   15.1   0.0    2.5  2  AAA_29        P-loop containing region of AAA domain
    2.1e-06   28.0   0.0        0.2   12.0   0.0    3.8  3  AAA_22        AAA domain
    5.3e-06   26.7   0.1     0.0036   17.4   0.0    3.3  2  DUF87         Helicase HerA, central domain
    1.6e-05   25.3   1.3      0.014   15.7   0.0    3.7  3  AAA_16        AAA ATPase domain
    2.1e-05   24.6   0.0       0.12   12.4   0.0    2.9  2  MMR_HSR1      50S ribosome-binding GTPase
    2.4e-05   24.9   0.1      0.021   15.4   0.0    3.0  2  AAA_18        AAA domain
    2.4e-05   24.9   9.9      0.012   16.2   0.0    3.2  2  AAA_23        AAA domain
    5.5e-05   23.5  16.1      0.019   15.4   0.3    4.4  3  HEAT_2        HEAT repeats
      8e-05   22.5   0.2    0.00018   21.3   0.2    1.6  1  Chromo        Chromo (CHRromatin Organisation MOdifier) domai
     0.0001   22.3   0.0       0.23   11.3   0.0    2.6  2  RsgA_GTPase   RsgA GTPase
    0.00014   21.7   0.2       0.48   10.1   0.0    3.2  3  AAA_15        AAA ATPase domain
    0.00015   22.1   0.0       0.36   11.2   0.0    2.6  2  RNA_helicase  RNA helicase
    0.00018   21.9   0.0        3.3    8.2   0.0    4.2  4  AAA           ATPase family associated with various cellular 
    0.00025   21.4   0.0        1.2    9.4   0.0    2.6  2  AAA_28        AAA domain
    0.00041   20.3   0.1        5.2    6.9   0.0    3.6  3  ATPase_2      ATPase domain predominantly from Archaea
    0.00048   20.1   0.1        0.5   10.3   0.0    2.8  2  NACHT         NACHT domain
    0.00071   19.8   0.0        1.3    9.2   0.0    2.8  2  AAA_33        AAA domain
    0.00082   19.4   8.3       0.11   12.8   0.0    5.1  4  HEAT          HEAT repeat
    0.00086   18.4   0.2       0.31   10.0   0.1    2.4  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0025   18.0   0.1       0.86    9.9   0.0    3.5  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0035   17.1   0.2        3.4    7.3   0.1    3.4  3  AAA_30        AAA domain
     0.0042   16.6   0.1        2.8    7.4   0.0    2.4  2  AAA_7         P-loop containing dynein motor region
     0.0077   16.3   2.2      0.019   15.0   0.0    2.8  2  4HB           Four helical bundle domain
  ------ inclusion threshold ------
      0.014   14.1   0.0        1.4    7.4   0.0    2.5  2  AAA_13        AAA domain
       0.02   14.1   0.0        2.5    7.2   0.0    2.5  2  NB-ARC        NB-ARC domain
      0.021   14.0   0.1        3.8    6.6   0.1    2.4  2  DUF815        Protein of unknown function (DUF815)
      0.028   14.9  10.2        8.4    7.0   1.0    5.7  5  HEAT_EZ       HEAT-like repeat
      0.028   14.1   2.2        2.5    7.8   0.0    2.9  2  AAA_24        AAA domain
      0.041   13.8   0.1        5.6    6.9   0.0    2.7  2  NTPase_1      NTPase
      0.058   13.6   0.0         19    5.5   0.0    2.7  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.072   12.4   0.0        2.7    7.3   0.0    2.5  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.072   13.4   0.8       0.21   12.0   0.8    1.9  1  U3snoRNP10    U3 small nucleolar RNA-associated protein 10
       0.11   12.5   1.7         16    5.5   0.1    3.0  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.12   12.4   0.0        8.6    6.4   0.0    2.9  2  AAA_14        AAA domain
       0.19   11.8   5.1         18    5.3   0.1    4.5  4  AAA_5         AAA domain (dynein-related subfamily)
       0.24   11.2   2.2         19    4.9   0.0    3.0  2  CLP1_P        mRNA cleavage and polyadenylation factor CLP1 P


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.2   3.4e-21   1.5e-18       1     137 []     469     597 ..     469     597 .. 0.77
   2 !   74.2   0.0   3.1e-23   1.4e-20       2     137 .]     712     943 ..     711     943 .. 0.71

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 3.4e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HH.HCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqele.slrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelk 98 
                 l+  +l lk+g+++++ G+nG+GKStL++++++       ++  +g ++ ++ ++  +++ i   + ++ + + + ++++  ++  e+++++l  +++ 
  CDO68928.1 469 LNTATLRLKRGHRYGLCGRNGTGKSTLMRAITNG------QV--EGFPSPDEVRTfYVEHDIDGSEADTAVLDFI-LADKRIQATKEEVIETLASVGFS 558
                 577899*************************754......44..4444444333303455566666665566655.66666677777788888888888 PP

                 CBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  99 dtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 d+++k+   sLSgG+k ++alara+l k+++lllDEpt+
  CDO68928.1 559 DERQKQAIGSLSGGWKMKLALARAMLFKADILLLDEPTN 597
                 89998899******************************8 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 3.1e-23
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEE.....................EETTCEGGG........B-HHHCCHCEEEE-SS.-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.....................xxxxxxxxx........xxxxxxxxxxxxxxxx.xx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.teGei.....................lldgkdlke........qeleslrkeigvlpqe.pq 69 
                  +++l+++ +++va++G+nG+GKStL+kll+g l+p + Gei                     +ld+++l++        ++le++ k  + +++e +q
  CDO68928.1 712 YDITLQVSLSSRVAVLGPNGSGKSTLVKLLIGDLEPnKGGEIwkhpnlvigyvaqhafhhidqHLDKTPLEYmlwryqtgEDLEEMMKANRQITEEdAQ 810
                 5899********************************666899999999999999999999999666666666555554442222222222222222122 PP

                 S-TTSBHHHH...............................................................HHHTC.........HHHHHHHSTTGG CS
                 xxxxxxxxxx...............................................................xxxxx.........xxxxxxxxxxxx RF
    ABC_tran  70 lfpeltvren...............................................................esdee.........iekalsklglke 96 
                   +e                                                                     +   +           ++ +++ + +
  CDO68928.1 811 KMKE-----GsivvvegqkrtideiigrkklkqsyeyevsfkglssseniwisrdelikrgfekkvlevdtreA---QrlgllrplvRREIEKHFADFG 901
                 2211.....12222234556666666666799999999999999999999999999999999999888775430...2466666666445555555555 PP

                 TTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 lkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 l+++ v+++  + LSgGqk++v+l +a +++p +++lDEpt+
  CDO68928.1 902 LEAEFVSHNSmRGLSGGQKVKVVLGAATWRRPHVICLDEPTN 943
                 55566655445******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     3e-05     0.014       3      34 ..     483     511 ..     482     527 .. 0.73
   2 !   14.2   0.0   6.1e-05     0.028     227     302 ..     559     629 ..     530     630 .. 0.81
   3 !   30.6   0.3   6.4e-10   2.9e-07       3     298 ..     725     970 ..     724     973 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltd 34 
                 +l G+Ng+GKS+L++a+      + +++++ d
  CDO68928.1 483 GLCGRNGTGKSTLMRAITNG---QVEGFPSPD 511
                 699**************766...455555555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.1e-05
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrllellkelsrngaQviltTHSplll 302
                 + +q+  + +lS G k  lal+ a+l  +   ++ll+DEp n+L+    ++l+  l+ l  +++     i+++H+  +l
  CDO68928.1 559 DERQKQAIGSLSGGWKMKLALARAMLFKA---DILLLDEPTNHLDVvnvAWLENYLTSLQTCTS-----IIVSHDSGFL 629
                 45788899999999999999999999999...9*************777777777777777777.....9999988766 PP

  == domain 3  score: 30.6 bits;  conditional E-value: 6.4e-10
      AAA_21   3 vliGpNgsGKSnLLdaldllarl...drdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv.....eeklssvetl 93 
                 ++ GpNgsGKS+L ++l  + +l    +  +  +++l  g   +   + +d   ++ p e+ +    ++g + +  ++ +r++      ++k +s   +
  CDO68928.1 725 AVLGPNGSGKSTLVKLL--IGDLepnKGGEIWKHPNLVIGYVAQHAFHHIDQHLDKTPLEYMLW-RYQTGEDLEEMMKANRQITeedaqKMKEGSIVVV 820
                 689**************..555566666666666666666666666666666666666666666.6666666666666666666777777777777777 PP

      AAA_21  94 lesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrsl 192
                 ++   + d+ + ++  + ++e++ +++g+s+ +++++s+ e +++ f+k  ++++ r ++ l ll        ++l     + +fa+ +  ++  ++ +
  CDO68928.1 821 EGQKRTIDEIIGRKKLKQSYEYEVSFKGLSSSENIWISRDELIKRGFEKKVLEVDTREAQRLGLL--------RPLVRREIEKHFADFGLEAEFVSHNS 911
                 77777888888888888888888888888888888888888888888777777777777766633........44444444444444444444444444 PP

      AAA_21 193 klveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQ 291
                  +                                          lS G+k    l +a +r++    ++++DEp n L+ + l+ l++ lke +     
  CDO68928.1 912 MRG-----------------------------------------LSGGQKVKVVLGAATWRRP---HVICLDEPTNYLDRESLAALIKALKEFEG---G 963
                 444.........................................5******************...89*************************99...9 PP

      AAA_21 292 viltTHS 298
                 v++ TH+
  CDO68928.1 964 VLVITHN 970
                 ******8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0054       2.5      28      44 ..     483     499 ..     466     504 .. 0.82
   2 !   19.4   0.1   1.2e-06   0.00057     117     205 ..     542     632 ..     516     642 .. 0.85
   3 !   10.0   0.0   0.00091      0.42      26      42 ..     723     739 ..     711     744 .. 0.81
   4 !   10.3   0.0   0.00073      0.34     135     204 ..     866     976 ..     774     987 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0054
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  + G+NG GKs l+ Ai
  CDO68928.1 483 GLCGRNGTGKSTLMRAI 499
                 589*************9 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.2e-06
                 EE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 ++tk+ev e l+s+g+s e       +LSgG k    + L +A  +  +a + llDe   +LD  nv+ + ++l + + ++  i++s+++++l+++
  CDO68928.1 542 QATKEEVIETLASVGFSDErqkqaigSLSGGWK----MKLALARAMLFKADILLLDEPTNHLDVVNVAWLENYLTSLQ-TCTSIIVSHDSGFLNNV 632
                 57788999999999998889999999*****88....56667788899999*************************99.67788999999999875 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00091
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   a++GpNGSGKs l+ 
  CDO68928.1 723 RVAVLGPNGSGKSTLVK 739
                 4689*********9975 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00073
                 T...............................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH CS
                 x...............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...............................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek 186
                                                                  LSgG+k      +++     ++  + +lDe    LD +  +++ + lke 
  CDO68928.1 866 GfekkvlevdtreaqrlgllrplvrreiekhfadfgleaefvshnsmrGLSGGQKV----KVVLGAATWRRPHVICLDEPTNYLDRESLAALIKALKEF 960
                 1444456666666666666666666666666777777777888888889*****95....44444445555555669********************99 PP

                 CTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N 187 sknaQfivislreemlek 204
                 +    ++vi++++++ e 
  CDO68928.1 961 E--GGVLVITHNRDFSES 976
                 9..99*******998775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.8e-05     0.041      16      43 ..     473     500 ..     468     501 .. 0.78
   2 !   15.1   0.0   3.2e-05     0.015      17      39 ..     716     738 ..     710     748 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.8e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiq 43 
                 t+++++   + l G++G+GKSTl+ Ai+
  CDO68928.1 473 TLRLKRGHRYGLCGRNGTGKSTLMRAIT 500
                 566664447889************9986 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.2e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 ++++l++ + + Gp+GsGKSTl+
  CDO68928.1 716 LQVSLSSRVAVLGPNGSGKSTLV 738
                 5566667799************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.34   1.5e+02      78     103 ..     269     295 ..     193     310 .. 0.64
   2 !   12.0   0.0   0.00043       0.2      10      46 ..     484     519 ..     479     570 .. 0.78
   3 !    8.5   0.0    0.0051       2.4       9      30 ..     725     746 ..     721     777 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.34
      AAA_22  78 ll.ealeqalraravielliiDEaqhl 103
                 ll + l++ l a+++++++iiD++ +l
  CDO68928.1 269 LLsRGLNEKLTATKRRVAVIIDNMAKL 295
                 2335566666666669********998 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00043
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46 
                 ++G  GtGK+tl+r +++  +e  ++   ++++++v+
  CDO68928.1 484 LCGRNGTGKSTLMRAITNGQVEG-FPSPDEVRTFYVE 519
                 79****************97543.3333556665555 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0051
      AAA_22   9 vvtGesGtGKTtllrrlleqld 30 
                 +v G+ G+GK+tl++ l   l+
  CDO68928.1 725 AVLGPNGSGKSTLVKLLIGDLE 746
                 799************9987764 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.05        23      25      48 ..     481     504 ..     471     513 .. 0.84
   2 !   17.4   0.0   7.8e-06    0.0036      17      47 ..     717     745 ..     706     753 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.05
       DUF87  25 HlAilgsTGsGKSntvavLleell 48 
                 + +  g+ G+GKS++++ + +  +
  CDO68928.1 481 RYGLCGRNGTGKSTLMRAITNGQV 504
                 56788999***********98766 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.8e-06
       DUF87  17 dlnklvtrHlAilgsTGsGKSntvavLleel 47 
                  +   ++ ++A+lg  GsGKS++v++L+  l
  CDO68928.1 717 QV--SLSSRVAVLGPNGSGKSTLVKLLIGDL 745
                 44..4699*******************9776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       6.9   3.2e+03      80     127 ..      67     117 ..      15     136 .. 0.55
   2 ?    5.8   0.0     0.036        17      29      46 ..     484     501 ..     468     595 .. 0.64
   3 !   15.7   0.0   3.1e-05     0.014      22      88 ..     721     778 ..     705     842 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.9
      AAA_16  80 ellrqlldeaesaeleawrekleeala..avpelagaea.......srllellkrll 127
                  +l++l+d+++ a++ea++ +  ++++  a   ++   a       s l+++l +++
  CDO68928.1  67 AVLKALGDKKSPAQREAAANAVAAVAGspA---VK---AleplfvdSGLYAALLEAF 117
                 345555555555455544444444433222...22...1223555644444444444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.036
      AAA_16  29 lsGesGvGKsslvrellr 46 
                 l G  G+GKs+l+r++ +
  CDO68928.1 484 LCGRNGTGKSTLMRAITN 501
                 66999*********9997 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 3.1e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 +  + v + G+ G+GKs+lv+ l   le ++g  ++ +          + ++ + a+ + + q ld+
  CDO68928.1 721 S--SRVAVLGPNGSGKSTLVKLLIGDLEPNKGGEIWKHPNLV------IGYVAQHAF-HHIDQHLDK 778
                 3..6799*********************99666666666665......333333323.444444433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00027      0.12       3      24 ..     483     504 ..     481     544 .. 0.87
   2 !    9.1   0.0     0.003       1.4       1      22 [.     723     744 ..     723     758 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00027
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 ++ Gr  +GKStL++a+t+ ++
  CDO68928.1 483 GLCGRNGTGKSTLMRAITNGQV 504
                 799***************9644 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.003
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 +va++G   +GKStL++ l+g+
  CDO68928.1 723 RVAVLGPNGSGKSTLVKLLIGD 744
                 69*****************986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.035        16       3      21 ..     484     502 ..     483     563 .. 0.74
   2 !   15.4   0.0   4.5e-05     0.021       1      82 [.     724     823 ..     724     826 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.035
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                 l+G  G+GK+tl +++ + 
  CDO68928.1 484 LCGRNGTGKSTLMRAITNG 502
                 8999**********99543 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.5e-05
      AAA_18   1 IlltGtpGvGKttlakeL......skrlgf............gvnlrdvakenglllevdpe....aldeskrldedkldklldaleenssaleegknl 77 
                 +++ G+ G+GK+tl k L      +                 g++ ++ + + +  l+ +p     +  ++ +  e++++++ ++ ee ++++ eg+ +
  CDO68928.1 724 VAVLGPNGSGKSTLVKLLigdlepN----KggeiwkhpnlviGYVAQHAFHHIDQHLDKTPLeymlWRYQTGEDLEEMMKANRQITEEDAQKMKEGSIV 818
                 6899**************8655542....1333477776677555555555555555555555554445555555555555555555555599999999 PP

      AAA_18  78 vidgh 82 
                 v++g+
  CDO68928.1 819 VVEGQ 823
                 99996 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.5e-05     0.012      24      42 ..     484     502 ..     474     577 .. 0.70
   2 ?    6.6   8.0     0.022        10      23     131 ..     725     839 ..     714    1052 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.5e-05
      AAA_23  24 ItGpNGaGKTTildAikla 42 
                 ++G NG+GK+T+++Ai+ +
  CDO68928.1 484 LCGRNGTGKSTLMRAITNG 502
                 79**************854 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.022
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks........grgfeksdveiesegkvkayvelt.fenkdgrytrsier..erelskkkgkttkkakle 110
                 ++ GpNG+GK+T++      L g+ +++++++         +   ++ ++  +++ +k+ +e    ++++g++   +e+  + +++ ++++ +k+++++
  CDO68928.1 725 AVLGPNGSGKSTLVKL----LIGDLEPNKGGEiwkhpnlvIGYVAQHAFHHIDQHLDKTPLEYMlWRYQTGED---LEEmmKANRQITEEDAQKMKEGS 816
                 568**********985....56766555555556666665334444444433433444444444577777854...77733445555666777888899 PP

      AAA_23 111 lleideleqfisellgskki..i 131
                 ++ ++ ++++i+e++g+kk   +
  CDO68928.1 817 IVVVEGQKRTIDEIIGRKKLkqS 839
                 99999999999999997754333 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   7.5    0.0021      0.97      13      86 ..      36     131 ..      33     133 .. 0.67
   2 ?    1.8   0.2      0.71   3.3e+02      34      55 ..     111     132 ..     106     144 .. 0.77
   3 !   15.4   0.3     4e-05     0.019      28      80 ..     185     244 ..     147     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0021
      HEAT_2  13 dpevrraairaLg...rignpea......lpaLvelled.edpavRraaaeaLgaig.............dpealpaLkellddddddvvReaAaea 86 
                 ++++r aa+ +L+   ++  p+a      ++a++++l d ++pa R+aaa+a +a++             d+  ++aL+e+++d+  +  R+aA+ea
  CDO68928.1  36 EKATRDAAAAQLAtitQKEGPKAlqsigfIDAVLKALGDkKSPAQREAAANAVAAVAgspavkaleplfvDSGLYAALLEAFADKMPAA-RTAAVEA 131
                 56789999999994443333444777788********88467************99633333344444444556777777776544444.6677776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.71
      HEAT_2  34 paLvellededpavRraaaeaL 55 
                 +aL+e+  d+ pa R aa+ea 
  CDO68928.1 111 AALLEAFADKMPAARTAAVEAV 132
                 5777777888888888888876 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 4e-05
      HEAT_2  28 gnpealpaLvellededpavRraaaeaLgai......gd.pealpaLkellddddddvvR 80 
                  +pe++p+L e++ d++++v +aa ++L ++      +d ++++paL ++l ++ ++v +
  CDO68928.1 185 LSPEIVPILAEAIWDTKADVKKAARDSLEKVtalvsnKDiERFIPALIKALINPVEEVPK 244
                 368*************************99944444334899**********99888755 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2     4e-07   0.00018       2      47 ..     826     870 ..     825     873 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4e-07
                 EEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSH.SHHH CS
      Chromo   2 eVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekc.fqel 47 
                 ++++Ii++++ k     eY V  kgl+ sen W ++++l k  f+++
  CDO68928.1 826 TIDEIIGRKKLKQSY--EYEVSFKGLSSSENIWISRDELIKRgFEKK 870
                 5899***********..******************776555447775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0051       2.3     100     122 ..     480     502 ..     438     523 .. 0.85
   2 !   11.3   0.0   0.00051      0.23      92     124 ..     715     746 ..     682     759 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0051
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                  +   l+G  G GKStL+ a+++ 
   CDO68928.1 480 HRYGLCGRNGTGKSTLMRAITNG 502
                  66779*************99875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00051
                  HHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  92 elkellkdktsvlvGqSGvGKStLinallpele 124
                  +l+  l++++ +++G+ G GKStL++ l+++le
   CDO68928.1 715 TLQVSLSSRV-AVLGPNGSGKSTLVKLLIGDLE 746
                  4555555555.567**************99765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     0.001      0.48      28      47 ..     484     500 ..     481     567 .. 0.68
   2 !    7.5   0.4    0.0066         3      19      43 ..     718     741 ..     711     881 .. 0.87
   3 ?   -2.7   0.0       7.9   3.6e+03     323     350 ..     932     959 ..     923     970 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
      AAA_15  28 liGkNnsGKSsilealdlFl 47 
                 l+G+N++GKS++++a+    
  CDO68928.1 484 LCGRNGTGKSTLMRAI---T 500
                 8**************9...3 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0066
      AAA_15  19 idlseeltvliGkNnsGKSsileal 43 
                 ++ls+    + G+N+sGKS+++++l
  CDO68928.1 718 VSLSS-RVAVLGPNGSGKSTLVKLL 741
                 56666.67888***********998 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.9
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllke 350
                 ++++++++EP ++L  +    lik+lke
  CDO68928.1 932 RPHVICLDEPTNYLDRESLAALIKALKE 959
                 5899*********999988888888887 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0086         4       3      21 ..     484     502 ..     483     522 .. 0.79
   2 !   11.2   0.0   0.00078      0.36       2      24 ..     725     748 ..     724     777 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0086
  RNA_helicase   3 lyGpsgeGKStlakeLaka 21 
                   l+G++g+GKStl++ +++ 
    CDO68928.1 484 LCGRNGTGKSTLMRAITNG 502
                   79************98775 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00078
  RNA_helicase   2 wlyGpsgeGKStlakeLakall.k 24 
                    + Gp+g GKStl+k L+ +l+ +
    CDO68928.1 725 AVLGPNGSGKSTLVKLLIGDLEpN 748
                   588***************999832 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       8.5   3.9e+03      80     120 ..     222     263 ..     210     268 .. 0.65
   2 !    7.7   0.0    0.0095       4.4       3      21 ..     484     502 ..     482     595 .. 0.75
   3 !    8.2   0.0    0.0071       3.3       2      23 ..     725     746 ..     724     822 .. 0.76
   4 ?   -0.3   0.0       2.9   1.3e+03      44     107 ..     919     968 ..     897     989 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 8.5
                 HHHHHHHHHHHHHHHH.TTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA  80 eeeervvnqLlteldg.vkkkeskvivigatnrpdkldpall 120
                 ++ er +++L+++l + v++  ++++++ at+ ++++d++ l
  CDO68928.1 222 KDIERFIPALIKALINpVEEVPKTITLLSATTFVSEVDSPTL 263
                 455666666666544404444556888888888999998876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0095
                 EESSTTSSHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake 21 
                 l+G  GtGK++l++a+ + 
  CDO68928.1 484 LCGRNGTGKSTLMRAITNG 502
                 89**************986 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0071
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                  + Gp G GK++l+k ++ +l+
  CDO68928.1 725 AVLGPNGSGKSTLVKLLIGDLE 746
                 578**************99874 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEE CS
         AAA  44 kkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivig 107
                 +k++ ++ +a   + p+++ +DE  +   ++           +++L+++l++++     v+vi+
  CDO68928.1 919 QKVKVVLGAATWRR-PHVICLDEPTNYLDRE----------SLAALIKALKEFEG---GVLVIT 968
                 56666666666665.9999999988887666..........68888888888888...366654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0026       1.2       4      63 ..     484     544 ..     481     560 .. 0.64
   2 !    9.4   0.0    0.0026       1.2       1      42 [.     723     771 ..     723     821 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0026
      AAA_28   4 itGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwvedllafaervleeq 63 
                 + G  +tGK+tl++a+++    g+p   E+ + ++e+  +  e + +   d++   + ++++ 
  CDO68928.1 484 LCGRNGTGKSTLMRAITNGqveGFPSPDEVRTFYVEHDIDGSEADTAV-LDFILADK-RIQAT 544
                 56889************8635677776777666666655554444433.46654443.34444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0026
      AAA_28   1 kivitGgestGKTtlleaLa.....ar.gypvv.pEaareileeklakg 42 
                 +++++G+ ++GK+tl++ L      ++ g  +  p  +  ++ ++++ +
  CDO68928.1 723 RVAVLGPNGSGKSTLVKLLIgdlepNKgGEIWKhPNLVIGYVAQHAFHH 771
                 799*************999744433224333334666666666666444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.021       9.8     109     145 ..     274     310 ..     206     328 .. 0.83
   2 ?    3.0   0.0      0.17        80      26      44 ..     485     503 ..     473     631 .. 0.80
   3 ?    6.9   0.0     0.011       5.2      24      45 ..     725     746 ..     715     838 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.021
    ATPase_2 109 llekikkkgkkiiiiiDelqklidlglngaellvkeL 145
                 l ek++ +++++++iiD ++kl+d  +    +  k L
  CDO68928.1 274 LNEKLTATKRRVAVIIDNMAKLVDSAITVRPFIPKLL 310
                 56789999999************98877655555555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.17
    ATPase_2  26 YGpegsGKtaLlkeiienl 44 
                  G+ g GK++L++ i + +
  CDO68928.1 485 CGRNGTGKSTLMRAITNGQ 503
                 699**********998755 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.011
    ATPase_2  24 fiYGpegsGKtaLlkeiienle 45 
                  + Gp gsGK++L+k +i  le
  CDO68928.1 725 AVLGPNGSGKSTLVKLLIGDLE 746
                 688************9998775 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.014       6.3       6      30 ..     485     509 ..     481     640 .. 0.76
   2 !   10.3   0.0    0.0011       0.5       2      25 ..     723     746 ..     722     754 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
                 EC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT   6 qGeaGsGKTtLlqklalawaegklp 30 
                  G++G GK+tL++ +     eg + 
  CDO68928.1 485 CGRNGTGKSTLMRAITNGQVEGFPS 509
                 69************98776666555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
                 CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawa 25 
                  v++ G++GsGK+tL++ l+ ++ 
  CDO68928.1 723 RVAVLGPNGSGKSTLVKLLIGDLE 746
                 689*************99987765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0094       4.3       4      43 ..     484     522 ..     483     583 .. 0.72
   2 !    9.2   0.0    0.0029       1.3       3      23 ..     725     745 ..     724     817 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0094
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqq 43 
                 l+G +G+GKstl + +  + +++   s+++ r+ +++++ 
  CDO68928.1 484 LCGRNGTGKSTLMRAIT-NGQVEGFPSPDEVRTFYVEHDI 522
                 69***********9977.4447777777777766664444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0029
      AAA_33   3 llvGlpGsGKstlaerllkkl 23 
                  + G++GsGKstl++ l+  l
  CDO68928.1 725 AVLGPNGSGKSTLVKLLIGDL 745
                 578***********9986554 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       5.8   2.7e+03      16      29 ..      39      52 ..      35      53 .. 0.86
   2 !   12.8   0.0   0.00025      0.11       2      28 ..      65      92 ..      64      94 .. 0.91
   3 ?    4.8   0.2     0.088        40       4      28 ..     112     136 ..     109     138 .. 0.88
   4 ?    2.5   0.0      0.49   2.2e+02       1      22 [.     189     210 ..     189     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 5.8
                HHHHHHHHHHHHHH CS
        HEAT 16 VReaAakaLgalae 29
                 R+aAa  L+++ +
  CDO68928.1 39 TRDAAAAQLATITQ 52
                59*******99986 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00025
                HHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT  2 lPlllkllsD.pspeVReaAakaLgala 28
                ++++lk+l D +sp +ReaAa+a++a+a
  CDO68928.1 65 IDAVLKALGDkKSPAQREAAANAVAAVA 92
                7899****9*9*************9976 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.088
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +ll++  D+ p  R aA++a+  ++
  CDO68928.1 112 ALLEAFADKMPAARTAAVEAVRSFV 136
                 79999***************98876 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.49
                 HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAak 22 
                 ++P+l +++ D+ ++V +aA  
  CDO68928.1 189 IVPILAEAIWDTKADVKKAARD 210
                 79*****************955 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00067      0.31      15      51 ..     465     501 ..     454     506 .. 0.88
   2 ?    5.8   0.0     0.013       5.8      19      53 ..     711     745 ..     698     752 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00067
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealgl 51 
                 ak ll+ ++ +  r ++ Gl G  G+Gkstl+ a++ 
  CDO68928.1 465 AKILLNTATLRLKRGHRYGLCGRNGTGKSTLMRAITN 501
                 7789999999999*******************99875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
                 HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  19 lerllakaGraqvvGltGvPGaGkstlvealglel 53 
                 l  ++ +   + +v + G  G+Gkstlv+ l+  l
  CDO68928.1 711 LYDITLQVSLSSRVAVLGPNGSGKSTLVKLLIGDL 745
                 5666677778899***************9998776 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.17        79      24      81 ..     560     604 ..     547     612 .. 0.69
   2 !    9.9   0.0    0.0019      0.86      26      89 ..     908     958 ..     885     959 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.17
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesi 81 
                 ++ ++ +g+lSGG k   + lala a+  l++         ++++LDE  + lD  ++
  CDO68928.1 560 ERQKQAIGSLSGGWK---MKLALARAM--LFKA--------DILLLDEPTNHLDVVNV 604
                 457889999999999...555555444..3443........46788888888877665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0019
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  ++s+++lSGG+k   + ++l+aa     +      +++ ++ LDE  + lD es+a+l+++l+
  CDO68928.1 908 SHNSMRGLSGGQK---VKVVLGAA----TW------RRPHVICLDEPTNYLDRESLAALIKALK 958
                 5678888999999...77777754....23......35889********************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0074       3.4      23      40 ..     484     501 ..     472     506 .. 0.86
   2 ?    4.9   0.0      0.04        18      21      39 ..     724     742 ..     712     759 .. 0.77
   3 ?   -0.5   0.0       1.9   8.6e+02      81     120 ..     916     965 ..     873     971 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0074
      AAA_30  23 ltGpAGtGKttalkalre 40 
                 l G+ GtGK+t+++a+++
  CDO68928.1 484 LCGRNGTGKSTLMRAITN 501
                 6799***********975 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.04
      AAA_30  21 avltGpAGtGKttalkalr 39 
                 +++ Gp G+GK+t++k l 
  CDO68928.1 724 VAVLGPNGSGKSTLVKLLI 742
                 6788***********9875 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.9
      AAA_30  81 k.........grarlepgtllivDEag.mvdtkqlaallkaaekagakvi 120
                           g+a++++ +++  DE    +d ++laal+ka+++ +  v+
  CDO68928.1 916 SggqkvkvvlGAATWRRPHVICLDEPTnYLDRESLAALIKALKEFEGGVL 965
                 145556667766788899*******761569*********9998554444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.011       4.8      29      55 ..     475     501 ..     468     507 .. 0.84
   2 !    7.4   0.0    0.0062       2.8      26      60 ..     714     748 ..     705     778 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
       AAA_7  29 llknkkpvllvGptGtGKtviikdllk 55 
                  lk+++   l+G  GtGK+++++ +++
  CDO68928.1 475 RLKRGHRYGLCGRNGTGKSTLMRAITN 501
                 578889999*************99776 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0062
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldke 60 
                 ++l ++ +  v + Gp G+GK++++k l+  l+++
  CDO68928.1 714 ITLQVSLSSRVAVLGPNGSGKSTLVKLLIGDLEPN 748
                 5566777889999*************999888865 PP

>> 4HB  Four helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       6.5     3e+03      16      37 ..      74      93 ..      63      94 .. 0.72
   2 !   15.0   0.0   4.2e-05     0.019      25      74 ..     382     430 ..     363     434 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.5
         4HB 16 skkkkvaekfepvleYiaAiAg 37
                +  kk  ++ e++++ +aA+Ag
  CDO68928.1 74 D--KKSPAQREAAANAVAAVAG 93
                3..5667788999999*****9 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4.2e-05
         4HB  25 fepvleYiaAiAgqLiDekeidsaaWvenlkpyvtvivgekeakeivdel 74 
                  +++  Y++ +A++L   k+ d ++W + l py+t +    + ++iv+e+
  CDO68928.1 382 ADVTTIYVSNLAANLTKAKNFDVSEWQT-LIPYFTFLSTSPDPNTIVNEW 430
                 466788********************75.88******9999999999875 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0031       1.4      23      43 ..     486     506 ..     481     566 .. 0.81
   2 ?    3.7   0.0     0.041        19      21      36 ..     726     741 ..     716     767 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0031
      AAA_13  23 GwNGaGKTtLSrllrslelge 43 
                 G+NG+GK+tL r++ + + + 
  CDO68928.1 486 GRNGTGKSTLMRAITNGQVEG 506
                 9*************9976544 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.041
      AAA_13  21 iYGwNGaGKTtLSrll 36 
                 + G NG+GK+tL +ll
  CDO68928.1 726 VLGPNGSGKSTLVKLL 741
                 669*********9986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0055       2.5      24      47 ..     483     504 ..     474     604 .. 0.84
   2 ?    4.1   0.0     0.049        22      22      39 ..     723     740 ..     706     751 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0055
                 EEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksdev 47 
                 +l G+ G GK+tl++ i n   +v
  CDO68928.1 483 GLCGRNGTGKSTLMRAITNG--QV 504
                 689**************997..44 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.049
                 EEEEEESTTSSHHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlakq 39 
                  va+ G  G+GK+tl+k 
  CDO68928.1 723 RVAVLGPNGSGKSTLVKL 740
                 4899***********985 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0082       3.8      56      75 ..     482     501 ..     465     507 .. 0.80
   2 ?    4.8   0.0     0.029        13      53      77 ..     721     745 ..     679     774 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0082
      DUF815  56 vLLwGarGtGKSslvkalln 75 
                   L G  GtGKS+l++a++n
  CDO68928.1 482 YGLCGRNGTGKSTLMRAITN 501
                 5599*************987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.029
      DUF815  53 annvLLwGarGtGKSslvkallney 77 
                 ++ v + G  G+GKS+lvk l+ ++
  CDO68928.1 721 SSRVAVLGPNGSGKSTLVKLLIGDL 745
                 5677889************998766 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.0     0.018       8.4       3      52 ..      39      88 ..      37      91 .. 0.82
   2 ?    5.7   3.2     0.048        22       1      51 [.      78     131 ..      78     135 .. 0.54
   3 ?    2.8   0.0      0.39   1.8e+02      14      48 ..     174     208 ..     161     215 .. 0.84
   4 ?    0.4   0.0       2.2     1e+03      27      47 ..     225     246 ..     219     249 .. 0.71
   5 ?    3.8   0.0      0.19        86      22      54 ..     302     338 ..     291     339 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.018
     HEAT_EZ  3 vRraAawaLGr.laggepellqp..lvpeilpaLlalLnddsdeV..RaaAagaL 52
                 R aAa+ L++    ++p +lq   +++++l+aL+     d+++   R+aAa a 
  CDO68928.1 39 TRDAAAAQLATiTQKEGPKALQSigFIDAVLKALG-----DKKSPaqREAAANAV 88
                68888888988888888888888899999999999.....9995557*****996 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.048
     HEAT_EZ   1 wrvRraAawaLGrlaggepel.......lqplvpeilpaLlalLnddsd.eVRaaAaga 51 
                 +++R+aAa+a++++ag  +         +++l  ++l a++     d+  + R+aA+ a
  CDO68928.1  78 PAQREAAANAVAAVAGSPAVKaleplfvDSGLYAALLEAFA-----DKMpAARTAAVEA 131
                 689********987733332232223333334444444444.....4442447777666 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.39
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnddsdeVRaaA 48 
                 l + +p ++++l pei+p L+ +  d +++V++aA
  CDO68928.1 174 LVASAPAQIAKLSPEIVPILAEAIWDTKADVKKAA 208
                 45688999*************99999999998887 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 2.2
     HEAT_EZ  27 peilpaLlalLnddsdeV.Raa 47 
                 ++ +paL+++L ++  eV ++ 
  CDO68928.1 225 ERFIPALIKALINPVEEVpKTI 246
                 5677888888877777776665 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.19
     HEAT_EZ  22 lqplvpeilpaLl...alLnddsd.eVRaaAagaLgn 54 
                 ++p++p++lp L+   ++  d+++ +V   A+ +L++
  CDO68928.1 302 VRPFIPKLLPGLIkveSTIGDPEArSVVNRAINTLRQ 338
                 789**********999999999999998888888887 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.032        15       4      23 ..     481     512 ..     478     584 .. 0.71
   2 ?    7.8   0.0    0.0054       2.5       4      22 ..     723     741 ..     720     753 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.032
      AAA_24   4 kiliyGpsgiGKTtlakel............g 23 
                 ++ + G +g+GK+tl++ +            +
  CDO68928.1 481 RYGLCGRNGTGKSTLMRAItngqvegfpspdE 512
                 77899***********9986666555554333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0054
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 ++++ Gp+g+GK+tl+k l
  CDO68928.1 723 RVAVLGPNGSGKSTLVKLL 741
                 899************9977 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.096        44       3      21 ..     483     501 ..     481     514 .. 0.84
   2 ?    6.9   0.0     0.012       5.6       2      24 ..     724     746 ..     723     751 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.096
                 EEE--TTSSHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvle 21 
                  + G+ G+GK+Tl++ +++
  CDO68928.1 483 GLCGRNGTGKSTLMRAITN 501
                 589**********998875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
                 EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellk 24 
                 v++ Gp G+GK+Tlvk ++  l+
  CDO68928.1 724 VAVLGPNGSGKSTLVKLLIGDLE 746
                 7899************9998875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.04        19       4      26 ..     484     506 ..     481     533 .. 0.84
   2 ?    5.2   0.0      0.05        23       1      21 [.     723     743 ..     723     775 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.04
                 EESSTTSSHHHHHHCHCT-CCC- CS
         Roc   4 lvGdsgvGKtsllkrfvedkfse 26 
                 l+G +g+GK++l++ +++++++ 
  CDO68928.1 484 LCGRNGTGKSTLMRAITNGQVEG 506
                 79***************999864 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.05
                 EEEEESSTTSSHHHHHHCHCT CS
         Roc   1 KvvlvGdsgvGKtsllkrfve 21 
                 +v ++G +g+GK++l+k ++ 
  CDO68928.1 723 RVAVLGPNGSGKSTLVKLLIG 743
                 5889************98875 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.22     1e+02      44      59 ..     484     499 ..     461     517 .. 0.90
   2 ?    7.3   0.0     0.006       2.7      39      60 ..     721     742 ..     698     747 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.22
                   EE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  44 vaGatgsGKStalntL 59 
                   ++G+ g+GKSt ++++
    CDO68928.1 484 LCGRNGTGKSTLMRAI 499
                   69*********99986 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.006
                   -.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  39 ashllvaGatgsGKStalntLi 60 
                    s + v+G  gsGKSt ++ Li
    CDO68928.1 721 SSRVAVLGPNGSGKSTLVKLLI 742
                   36899*************9998 PP

>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00045      0.21       5     105 ..     147     255 ..     145     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00045
                 HHHHHHHHHT-.TT-HHHHHHHHHHHHHHHHTT-.....S-HHHHHHHHHHHHHH--..GGGHHHHHHHHHHHHHT-SS-S--HHHHHHHTT.STTHHH CS
  U3snoRNP10   5 llpvllegLls.sssadlqaaaymilsvLaskvp.....Lsdkvleallesilknls..kelaksallcllvlaqsqsakllpkkvlkallk.lpslad 94 
                 +lp+ll+ +++  +   l+ ++++il +L++++p     Ls++++  l e+i  + +  k++a+++l  + +l++++  + +  +++kal   ++++++
  CDO68928.1 147 ILPALLHEIKTaGK-WQLKTGSLVILNQLVASAPaqiakLSPEIVPILAEAIWDTKAdvKKAARDSLEKVTALVSNKDIERFIPALIKALINpVEEVPK 244
                 89********9555.59************7654333333***************955589999999999999999998888999999999888999999 PP

                 HHHHHTTTS-- CS
  U3snoRNP10  95 vLeelskeyrv 105
                 +++ ls ++ v
  CDO68928.1 245 TITLLSATTFV 255
                 99888876655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.056        26      19      50 ..     479     509 ..     460     523 .. 0.77
   2 ?    5.5   0.1     0.034        16      19      70 ..     721     773 ..     705     844 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.056
                 TEEEEEEESTTSSHHHHHHHHHHHTT------ CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgveevkS 50 
                 g+   L G  G+GK+tl+r++ ++  ve   S
  CDO68928.1 479 GHRYGLCGRNGTGKSTLMRAITNGQ-VEGFPS 509
                 4457799999***********9884.555555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.034
                 TEEEEEEESTTSSHHHHHHHHHHHTT--....----TTTTSEEEEEE..SSEEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve....evkSPTFtlveeYelekeglyHfD 70 
                 ++ ++  G+ G+GK+tlv+ l+  l+ +      k P  +lv  Y + +++++H+D
  CDO68928.1 721 SSRVAVLGPNGSGKSTLVKLLIGDLEPNkggeIWKHP--NLVIGYVA-QHAFHHID 773
                 5568999**************9998764444234555..34445533.33455655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.33   1.5e+02       9      57 ..     486     536 ..     480     563 .. 0.67
   2 ?    6.4   0.0     0.019       8.6       5      27 ..     724     746 ..     721     778 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.33
      AAA_14   9 GaRrvGKTtllkqlikell...vkkesilyinldderdkkladpekllelil 57 
                 G   +GK+tl++ + + +     +++++  + ++++ d ++ad+  +l++il
  CDO68928.1 486 GRNGTGKSTLMRAITNGQVegfPSPDEVRTFYVEHDIDGSEADT-AVLDFIL 536
                 66789********9988888874455555555555444444443.3444444 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.019
      AAA_14   5 lvitGaRrvGKTtllkqlikell 27 
                 +++ G+  +GK+tl+k li +l 
  CDO68928.1 724 VAVLGPNGSGKSTLVKLLIGDLE 746
                 6799*************997765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1       0.3   1.4e+02       4      19 ..     484     499 ..     483     502 .. 0.89
   2 ?    5.3   0.1     0.038        18       3      19 ..     725     741 ..     723     751 .. 0.86
   3 ?    1.2   0.1      0.75   3.4e+02      19      82 ..     772     831 ..     764     835 .. 0.72
   4 ?    0.3   0.0       1.4   6.5e+02      63      91 ..     928     959 ..     903     964 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.3
                 EE--SSSSHHHHHHHG CS
       AAA_5   4 LvGppGtgKselaerl 19 
                 L G  GtgKs+l++ +
  CDO68928.1 484 LCGRNGTGKSTLMRAI 499
                 78**********9976 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.038
                 EEE--SSSSHHHHHHHG CS
       AAA_5   3 lLvGppGtgKselaerl 19 
                  ++Gp G+gKs+l++ l
  CDO68928.1 725 AVLGPNGSGKSTLVKLL 741
                 579***********987 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.75
                 GGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHH CS
       AAA_5  19 laaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevl 82 
                 + + l ++ ++++l r+ t edl   ++    +++ ++  +  +++eg+i+v+++ +r  +e++
  CDO68928.1 772 IDQHLDKTPLEYMLWRYQTGEDLEEMMKA---NRQITEEDAQ-KMKEGSIVVVEGQKRTIDEII 831
                 55556777777888888888999988885...5555555555.789999999999888777776 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.4
                 --..G-SEEEEESGGG--.HHHHHHHHHHHHS CS
       AAA_5  63 ar..egeilvlDEverae.sevlnsLlsllee 91 
                 a+  ++++++lDE ++   +e l++L++ l e
  CDO68928.1 928 ATwrRPHVICLDEPTNYLdRESLAALIKALKE 959
                 33449********8877668888888888765 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.042        19       1      20 [.     486     505 ..     486     528 .. 0.71
   2 ?    4.8   0.1     0.047        22       1      16 [.     728     743 ..     728     750 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.042
      CLP1_P   1 GpkdsGKSTlarlLlNyalr 20 
                 G + +GKSTl+r + N  ++
  CDO68928.1 486 GRNGTGKSTLMRAITNGQVE 505
                 7789************8874 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.047
      CLP1_P   1 GpkdsGKSTlarlLlN 16 
                 Gp+ sGKSTl++lL+ 
  CDO68928.1 728 GPNGSGKSTLVKLLIG 743
                 899***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1179  (0.0657594); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.45
# Mc/sec: 7071.89
//
Query:       CDO68929.1  [L=854]
Description: hypothetical protein BN946_scf185000.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
          0 1062.6   0.0          0 1062.5   0.0    1.0  1  V_ATPase_I    V-type ATPase 116kDa subunit family
  ------ inclusion threshold ------
      0.024   15.2   2.0      0.079   13.6   0.7    2.5  3  SlyX          SlyX
       0.12   11.9   0.1        0.2   11.2   0.1    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1062.5   0.0         0         0       2     813 .]      32     847 ..      31     847 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1062.5 bits;  conditional E-value: 0
  V_ATPase_I   2 eLGelglvqfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeea....eesleapeekeldeleeelekleeelkelnenleklk 96 
                 eLGelg+vqf+Dln+dvn fqr+fv e+rr+dem r++rf+ ++ie +++ +  +  +      +   + ++++del+ +l ++e++l+++ne+++ l+
  CDO68929.1  32 ELGELGNVQFKDLNPDVNPFQRSFVGEIRRIDEMARRVRFFASQIEMEREPIPIRPLYdsapLVTVGPRAAQTIDELDVKLAEHEARLTQMNESYQLLS 130
                 8********************************************996555544444466777788889999*************************** PP

  V_ATPase_I  97 kelnelvelkavlekakefleee.eeeeeeeeseeeeee.keeeeeeeseeeeeeelleeeee............lsfvaGvikrekveaferilwral 181
                 ++l+elve+++vl++++ f+++   + ++ + +++++++ ++e+e+++s +++++ ll+++++            l+fvaG+i+r+++++fer+lwr+l
  CDO68929.1 131 ERLRELVEARHVLRETAVFFDQVrPSLKAVHPDSHSAKAaSRETEARPSLDDSSAPLLQHDDReqqysagelqfdLEFVAGTIDRARLSTFERVLWRVL 229
                 ********************987433333322222222234444444443333333333333368999******************************* PP

  V_ATPase_I 182 rgnlflrqaeieepledpetgekveksvfiiffqgeqlkekikkicesfgaklyelpeseeereeklkeveeriedlekvleqteealkevleeiakel 280
                 rgnl++++ +i+ep++dp+tg +++k+vfiif++ge l +ki+k++es+ga++y+++ ++++r+++++ev+ r+edl+ vl +t  +++++l++ia++l
  CDO68929.1 230 RGNLYMNYIDIQEPFVDPATGVETRKNVFIIFAHGEFLLNKIRKVAESMGATIYPIDVNADKRADSMREVTGRLEDLQIVLYNTGANRRAELTTIAENL 328
                 *************************************************************************************************** PP

  V_ATPase_I 281 eewklkvkkekaiyhtLnlfnldvtkkvliaegWvpkeeleeiqkalkeateessssvpsilneietketpPTyfrtnkfteafQeivdaYGiarYrEv 379
                 ++w+ +v kek iy+tLnl+n+dv++k+liaegW+p++++ +iq al++atees+++vp+il+e++t+++pPT++rtnkfte+fQ+i+daYGia+Y+Ev
  CDO68929.1 329 ATWQDVVAKEKLIYETLNLLNYDVRRKTLIAEGWCPTRDIPQIQLALRHATEESGTNVPPILHELRTNRKPPTFHRTNKFTEGFQTIMDAYGIATYQEV 427
                 *************************************************************************************************** PP

  V_ATPase_I 380 NpalftiitFPFlFavMFGDiGHGlllllfalllvlkekklkkkkkdeilemlfsgRYiillmGlfsiYtGliYNdifskslnlfgSswevkekaveee 478
                 Np+lf++itFPFlFavMFGDiGHG++++l+a++++l+ekkl+k++ +ei++m+f gRYiillmGlfsiYtG++YNdifsk+l+lf+S+w+++e++   +
  CDO68929.1 428 NPGLFAVITFPFLFAVMFGDIGHGFIIALAAAVMILFEKKLAKADLGEIFDMFFFGRYIILLMGLFSIYTGFLYNDIFSKALHLFHSGWDFPERHG--N 524
                 *******************************************************************************************87764..3 PP

  V_ATPase_I 479 elkkekkeekvYpfGlDpaWklaenellflnSlKmKlsvilGviqMlfgvllslvNalyfkkkldiilefiPqllfllsifgYlvlliiyKWlvdweae 577
                  + +  +++++YpfG+DpaW++aen llf+nS+KmK+s++lGvi+M+f+++l++ N++ fk+  di+++fiPq++fl+sifgYlv++iiyKW+vdw++ 
  CDO68929.1 525 GTLVGLSNGRTYPFGIDPAWHGAENGLLFTNSYKMKMSIVLGVIHMTFAICLQVPNHIRFKRFSDIYTNFIPQMIFLQSIFGYLVVCIIYKWTVDWSQV 623
                 344688999****************************************************************************************87 PP

  V_ATPase_I 578 kekapsllntlinmflskgkv.keeelyegqetvqvvLlllalvcvpvlllvkPlilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeaeeeeee 675
                  +++pslln+li m+ls+g+v   ++ly+gq+tvqv+Lll+a vcvp+ll++kP++ + ++kk + +++    ++++             +++++++ e
  CDO68929.1 624 DTQPPSLLNMLIGMVLSPGSVdPATQLYPGQSTVQVILLLMAAVCVPWLLITKPYLQYQEMKKIHGQGYIGLGADDA------------PRHTDDTALE 710
                 888******************66678*************************************99999887654321............1122233344 PP

  V_ATPase_I 676 eeeeeeeeeeeeeeeeeeeefdfgevfihqvIhtIEfvLgciSnTASYLRLWALSLAHaqLseVlwemvlkkallksksvlgvillvilfavfavltva 774
                  eee + ++  e+++ee+ee+df+ev++hqvIhtIEf+Lgc+S+TASYLRLWALSLAHaqLseVlw+m+l++ +l +++++g+i+l+i+ +++++lt++
  CDO68929.1 711 GEEEGNGRAIVEANDEEHEEHDFSEVVVHQVIHTIEFCLGCVSHTASYLRLWALSLAHAQLSEVLWDMTLAN-VLGMSGLVGIIALAIVGVLWLILTIG 808
                 45556667777888899*******************************************************.7799********************** PP

  V_ATPase_I 775 vLllmeglsafLHaLRLhWVEfqsKFykgdGykFepfsf 813
                 +L++meglsafLHaLRLhWVE++sK+y++ Gy+F p+sf
  CDO68929.1 809 ILCVMEGLSAFLHALRLHWVEANSKHYEAGGYQFVPLSF 847
                 *************************************98 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.65   3.9e+03      31      48 ..      60      77 ..      56      86 .. 0.80
   2 ?   13.6   0.7   1.3e-05     0.079      16      54 ..     102     140 ..     100     155 .. 0.90
   3 ?   -3.4   0.0       2.6   1.6e+04      33      51 ..     289     307 ..     273     310 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.65
                HHHHHHHHHHHHHHHT-X CS
        SlyX 31 qqidrlqrqlrllaerlk 48
                ++id++ r++r  a +++
  CDO68929.1 60 RRIDEMARRVRFFASQIE 77
                689999999999999984 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54 
                  +ti+eL+  +ae++ +++++ +  +ll erl+el e+ 
  CDO68929.1 102 AQTIDELDVKLAEHEARLTQMNESYQLLSERLRELVEAR 140
                 58********************************98875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHT-XXXX CS
        SlyX  33 idrlqrqlrllaerlkele 51 
                  d+    +r+++ rl++l+
  CDO68929.1 289 ADKRADSMREVTGRLEDLQ 307
                 5666667777777777765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.4e-05       0.2      31      98 ..     268     334 ..     253     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
                   HHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2  31 kkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    ++++++ae++ga+++++DV+ ++  +++ +ev+ +++ l i++ n g  ++ +  ++  + + ++++
    CDO68929.1 268 LNKIRKVAESMGATIYPIDVNADKRADSM-REVTGRLEDLQIVLYNTGANRRAELTTIAENLATWQDV 334
                   6899*****************99998876.788999*************9994444444466666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 5193.89
//
Query:       CDO68930.1  [L=171]
Description: hypothetical protein BN946_scf185000.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.018   14.9   0.0    1.2  1  Topo-VIb_trans  Topoisomerase VI B subunit, transducer


Domain annotation for each model (and alignments):
>> Topo-VIb_trans  Topoisomerase VI B subunit, transducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     1e-06     0.018      87     151 ..      36     100 ..       7     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-06
  Topo-VIb_trans  87 inwkrYkleqpedpvvvlvhvastkvPfksegKeaiadveeiekeiklalqevarkLkkylskke 151
                     + w   ++e+ ++++vvl   a+++ P +se+ e i++v + +ke+  al +++ + ++y++k +
      CDO68930.1  36 FRWGPARIERMAGRLVVLSTSAGVENPAQSESCEVIDKVMQARKELACALARATNENQEYMKKYQ 100
                     46778889999***********************************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1215.16
//
Query:       CDO68931.1  [L=426]
Description: hypothetical protein BN946_scf185000.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2888.01
//
Query:       CDO68932.1  [L=298]
Description: hypothetical protein BN946_scf185000.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2163.92
//
Query:       CDO68933.1  [L=431]
Description: hypothetical protein BN946_scf185000.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.8    4.6  10.0         12    4.2  10.0    1.1  1  DUF1631   Protein of unknown function (DUF1631)


Domain annotation for each model (and alignments):
>> DUF1631  Protein of unknown function (DUF1631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  10.0   0.00065        12     225     338 ..     139     251 ..      93     281 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.00065
     DUF1631 225 saagaaeekeeeqkaPaaaaaaaagaaeaqasaaaaaegaaelfsaLqqLLsqareaaaaaaqaassasg...aearalssaeLlqaLselqqqaaaea 320
                   +++    e+++++P ++++++++++++++ a +++++++ + ++ q  L++a++   +++++ +s+ +   +++++   ++L+ +++  q+q +   
  CDO68933.1 139 PMSPSLPVIESQSAQPDEPQSSQPKKRKQRGGAHSSGASSGGTSASAQPALATAQPVPTPPQSPPASTLPmssSTTTTTRVPQLAPVMQTSQRQRR--- 234
                 344555566677777777777777777777777777777777999999999999998888887777655588888999999999999999999884... PP

     DUF1631 321 aagaeasvedlreqllnl 338
                  +g+++ v +  +q +++
  CDO68933.1 235 -GGRRQGVLNFSKQDVTE 251
                 .55555444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3170.01
//
Query:       CDO68934.1  [L=301]
Description: hypothetical protein BN946_scf185000.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   40.2   0.0    3.9e-10   39.6   0.0    1.3  1  DDE_Tnp_4  DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.2e-14   3.9e-10       1      83 [.     219     299 ..     219     301 .] 0.92

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.2e-14
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkg 83 
                 +Dg ++p+q + ++e++++ty+++ +++ +   +++ p+g+ ++   + pGs++D++++++   l    ++++pg++++aD++
  CDO68934.1 219 VDGLNLPVQVSADQEIENATYNGWLHDHFVSNILTFCPKGTLLHAVLNAPGSWHDSHVARDLYDLLL--TKTPPGYYLVADTA 299
                 7**********************************************************98743334..4589********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2041.90
//
Query:       CDO68935.1  [L=330]
Description: hypothetical protein BN946_scf185000.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-30  104.3   0.0    8.6e-30  103.7   0.0    1.3  1  DDE_1           DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.034   14.5   1.0      0.066   13.6   1.0    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain
      0.096   12.6   1.2       0.21   11.5   0.0    2.2  2  DUF2786         Protein of unknown function (DUF2786)


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   1.4e-33   8.6e-30      14     175 .]       2     159 ..       1     159 [. 0.94

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1.4e-33
       DDE_1  14 gsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWLkvfdkrleaekrkilLlldssrshetvelleselqniklvflPassasl 112
                 +s kL+p+vigk+k+pr f +  kt  +l+++y+ n k w+t+ + + W+k +d  l+a++r++lLl d++ +h +       l+ i++  + ++ +s 
  CDO68935.1   2 TSDKLPPMVIGKYKKPRPFGG--KTGAELGFNYHHNAKVWMTAVLYQSWIKKWDAELVAKQRQVLLLQDNFSGHIIPDG----LRAIHVENFEPNLTSH 94 
                 589****************99..***************************************************98887....78888888889***** PP

       DDE_1 113 lqPldqgvvselKarYrrqllqalleeqnrlsk..eqkkltlldalkfikkAwnavsketiksaf 175
                 +q  dqg+++ +Ka+Yr+++++ +++  ++     e   + +l a++   +Aw +v   ti++++
  CDO68935.1  95 VQLDDQGIIQCFKAHYRAKYIERAIDRYDAGTTpsEIYDIDILTAMRLADAAWREVDTTTIRHCW 159
                 ***************************999998446667899**********************9 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.0   1.1e-05     0.066      13      60 ..     240     288 ..     227     316 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
  CENP-B_dimeris  13 esesdeeeeeeee..deededeeddedddevpvpsfgeamayfamvkryl 60 
                     e e  e  +e  e  ++e+ed e+ded+    +p+  ea+a  a++ r+ 
      CDO68935.1 240 EEEIFEAMQEATEraQDEEED-EEDEDEPMEVLPTQREALAAAAVLTRFS 288
                     333333333222200222222.2333333345799999*99999998874 PP

>> DUF2786  Protein of unknown function (DUF2786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.5e-05      0.21       8      29 ..     181     203 ..     179     204 .. 0.91
   2 ?   -1.9   0.3      0.55   3.3e+03      20      29 ..     275     284 ..     272     291 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.5e-05
     DUF2786   8 KLLalAes.stneaEAeaAlakA 29 
                  LL++ e+  +  +EAeaA akA
  CDO68935.1 181 SLLNQPEDdRDPVHEAEAAVAKA 203
                 699999999*************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.55
     DUF2786  20 aEAeaAlakA 29 
                  EA aA+a  
  CDO68935.1 275 REALAAAAVL 284
                 5888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1417  (0.079034); expected 358.6 (0.02)
Passed bias filter:                      864  (0.0481901); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2205.94
//
Query:       CDO68936.1  [L=326]
Description: hypothetical protein BN946_scf185000.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-10   40.8   0.0    5.7e-10   39.1   0.0    2.0  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.2e-14   5.7e-10       3      63 ..     164     224 ..     162     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.2e-14
                  HHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS-- CS
  HTH_Tnp_Tc5   3 elEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhglk 63 
                   + + +  W+ q+r+ gi +tge++r+k++ +a +   + e+  ++S+gWl+r k Rhgl 
   CDO68936.1 164 KVTQLMDAWVTQARQAGILLTGEVLRTKWKSFADRVGVPAEERLSLSEGWLNRLKDRHGLC 224
                  56678999*************************88899********************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.57
# Mc/sec: 1709.89
//
Query:       CDO68937.1  [L=247]
Description: hypothetical protein BN946_scf185000.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 1468.95
//
Query:       CDO68938.1  [L=1260]
Description: hypothetical protein BN946_scf185000.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-39  132.9   0.0    1.3e-38  131.9   0.0    1.6  1  JmjC          JmjC domain, hydroxylase
    3.7e-15   55.6   0.6    8.9e-15   54.4   0.6    1.7  1  JmjN          jmjN domain
    1.1e-12   48.1   0.3    3.1e-12   46.6   0.3    1.8  1  zf-HC5HC2H    PHD-like zinc-binding domain
    8.8e-12   45.2   0.6    2.8e-11   43.6   0.6    1.8  1  zf-HC5HC2H_2  PHD-zinc-finger like domain
     0.0073   16.2   2.5       0.02   14.8   2.5    1.8  1  PHD           PHD-finger


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   3.7e-42   1.3e-38       1     114 []     413     529 ..     413     529 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 3.7e-42
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH...HHCCSTTGCCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskk...nskeqpdllrhkstlispkqlekegipvyrfvqkpgefVfvfpg 96 
                 +ly+gm+++t++wh+ed++l+Siny hfgapk Wy++p+++++ le+ ++      +k+++++lrhks l spk l ++  +++ +vq++gefV++fp+
  CDO68938.1 413 YLYFGMWRATFAWHVEDMDLFSINYIHFGAPKFWYAMPQARANALEQNMRSLfpgAGKNCSQFLRHKSYLASPKLLSQASCRPNYLVQQAGEFVITFPR 511
                 79********************************************999999999899***************************************** PP

                 -EEEEEESSSEEEEEEEE CS
        JmjC  97 ayHsvfnlgfniaeavnf 114
                 +yH++fnlgfn+ae+vnf
  CDO68938.1 512 GYHAGFNLGFNCAESVNF 529
                 *****************9 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.6   2.5e-18   8.9e-15       1      34 []      62      95 ..      62      95 .. 1.00

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 2.5e-18
                -EE---HHHHC-HHHHHHHHHHHHCCCSEEEE-- CS
        JmjN  1 PvFyPTeeEFkdplkYiekieplgekyGIcKIvP 34
                PvF+PT+eEF d+ +Y+ ++ep+g+++GI+KI+P
  CDO68938.1 62 PVFKPTMEEFLDFEAYMTRVEPWGMRSGIVKIIP 95
                9********************************9 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.3   8.6e-16   3.1e-12       1      70 [.     689     771 ..     689     785 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 8.6e-16
  zf-HC5HC2H   1 HvvCalwipevvfeeeke.........iemeeiedvekikkerkklkCylCkkk....vGaciqCskkkCkkafHvtCakeag 70 
                 Hv Ca +ipe+ ++e +           ++ ++ +v+ i k+r++lkC+ C+k+    +Ga iqC+k kC kafHv Ca++ g
  CDO68938.1 689 HVECANVIPETWVDEVEVgepdangtrSREKRVFGVDGIVKDRWNLKCTACTKTrnraHGAPIQCTKGKCPKAFHVSCARDGG 771
                 8899999998887776555666777766788999******************7667779********************9876 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.6   7.8e-15   2.8e-11      22      90 ..     688     772 ..     683     790 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 7.8e-15
  zf-HC5HC2H_2  22 vHvlCallvpevsfsnva............erepvdvekikkerlkekCllCkkr....kGaciqCskkeCktafHvtCalaagl 90 
                   +Hv Ca ++pe+ +++v+            e++ + v+ i+k+r+++kC+ C+k+    +Ga iqC+k++C +afHv Ca++ g 
    CDO68938.1 688 AHVECANVIPETWVDEVEvgepdangtrsrEKRVFGVDGIVKDRWNLKCTACTKTrnraHGAPIQCTKGKCPKAFHVSCARDGGA 772
                   6888888777777766665666677766534445559****************999999*********************98765 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.5   5.6e-06      0.02       2      30 ..     736     767 ..     735     773 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.6e-06
                 BTTTTS.TTSTTSCEEEET..TTSCEEETTTS CS
         PHD   2 CavCkk.ksdeeeelvqCd..gCkrwfHqkCl 30 
                 C +C k ++ +++  +qC   +C ++fH++C 
  CDO68938.1 736 CTACTKtRNRAHGAPIQCTkgKCPKAFHVSCA 767
                 ******99999*******7446*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.54
# Mc/sec: 7042.21
//
Query:       CDO68939.1  [L=987]
Description: hypothetical protein BN946_scf185000.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0048   17.2   0.0     0.0099   16.2   0.0    1.5  1  NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome break


Domain annotation for each model (and alignments):
>> NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome breakage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.5e-07    0.0099       2     115 ..     228     338 ..     227     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.5e-07
  NIBRIN_BRCT_II   2 eRkelFegktFvfldkkqye...klspvitnGgGkalleeeettaedlvryvkkvageedgselleskgvvvvrvrpkkssteewiaevenelak 93 
                     eR  +F++  F+f+ +k  e   +l ++++ G+G+  +   e+ ae l + + k  g+ +  + l++ ++ vv         e+ ++ + +e ++
      CDO68939.1 228 ERVGIFRNRRFLFVGEKGAEvrtELRDLVKRGEGDYECFAVESGAERLREVLAKGRGRGSALT-LVADQSAVVAAVG-----EDAWRALVEEAKS 316
                     899***********9987543339**************7777777556666666655554444.4455555555443.....4688999999999 PP

  NIBRIN_BRCT_II  94 kgqrvIeesEildAilacsask 115
                      ++r+ + + + dA++++++s 
      CDO68939.1 317 FELRFLPPQKLIDAVVYADVSY 338
                     9******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.36s 00:00:01.21 Elapsed: 00:00:00.53
# Mc/sec: 5605.63
//
Query:       CDO68940.1  [L=596]
Description: hypothetical protein BN946_scf185000.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-36  125.2   0.0    6.9e-36  124.1   0.0    1.5  2  CAP59_mtransfer  Cryptococcal mannosyltransferase 1


Domain annotation for each model (and alignments):
>> CAP59_mtransfer  Cryptococcal mannosyltransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.0   3.8e-40   6.9e-36       2     226 ..     162     389 ..     161     403 .. 0.82
   2 ?   -3.9   0.0      0.48   8.7e+03     155     176 ..     415     436 ..     408     453 .. 0.62

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 3.8e-40
  CAP59_mtransfer   2 vfiAanlynneellpewleallelirfLgpenvfvSiyesgskdgtkeaLraleaelealgversivlneeteleldelesgkkelkRIeyLae 95 
                      +f+ +++++++++l + l+ +++l++ Lgp+n+fvS+++  s+d+t+++ + +ea l+ lgv+ +i+     +++ +  + + +e       a 
       CDO68940.1 162 YFVGMVIHSADHFLVDQLAVIVQLAKRLGPSNIFVSMLDYSSSDSTETLTDLCEAVLTLLGVPFRIRRVPGMTEDPSAAYYPLEE-------AY 248
                      799999************************************************************6443333333333333333.......99 PP

  CAP59_mtransfer  96 lRNkaLepLeelakegkekfdkvlFlnDvvftaedileLleq...qngeydaaCalDfskkpl..kfyDtwvlRdleGkefl............ 172
                      +RN++LepL+el+++++ kf++v++l   +++++dile ++    +  e++++C++D+++++    f D+w +Rd++G++f             
       CDO68940.1 249 TRNLVLEPLHELYERRNIKFHRVIWLKG-FTCPNDILETIKVsivN--EAAMVCGMDWAEHNGffIFSDRWRTRDINGDQFRqskssaisessl 339
                      *************99999**********.************97644..5**********76547899**************9888888776543 PP

  CAP59_mtransfer 173 splwpyfkseesreaveagldpvpVksCWnGmvaldaepflaeeklrFRasees 226
                      + ++p  ++ +s++++ ++l p++V++C +G+ ++d++  +   ++ +Ra ++ 
       CDO68940.1 340 T-SVP-PRDTTSAQRYIQHL-PFQVFCCESGTHVVDPAQSY-YAGISYRAGTDY 389
                      1.222.24477888888888.**********9777666553.379****98654 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.48
  CAP59_mtransfer 155 lkfyDtwvlRdleGkeflsplw 176
                      +   D wv +  eG +++ p +
       CDO68940.1 415 WFCRDLWVWKAKEGMKAFDPDV 436
                      4567889999999988776633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 3527.87
//
Query:       CDO68941.1  [L=788]
Description: hypothetical protein BN946_scf185000.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.1e-164  547.9   0.0   3.7e-164  547.7   0.0    1.0  1  Nup84_Nup100  Nuclear pore protein 84 / 107
  ------ inclusion threshold ------
       0.02   13.4   1.1       0.02   13.4   0.1    1.4  2  Nic96         Nup93/Nic96


Domain annotation for each model (and alignments):
>> Nup84_Nup100  Nuclear pore protein 84 / 107
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  547.7   0.0  4.1e-168  3.7e-164       2     729 ..      64     770 ..      63     771 .. 0.88

  Alignments for each domain:
  == domain 1  score: 547.7 bits;  conditional E-value: 4.1e-168
                   HHHHHHHHHHHHHHHHHHHHHSS-TTT......---SSTTS-HHHHHHHHHHH-HHHHHHHHHHHHHHHT-------SS--S......STTHHHHHC CS
  Nup84_Nup100   2 enlelEaktWdLlerLysdrlssasekseeeeellelhpyssekelveellkkdselrelqivldWLeenakepeeeegeddelearahkwenTles 98 
                   e l++E +tW Ll++L+s+r+ +       ++ell+++py++ ++l ++++++++ l+el +v++WL+e+a++p+  +  +      +++w +T+++
    CDO68941.1  64 EALRMESDTWALLQALMSLRK-TTPPHYPHARELLAANPYTPPATLAQSIMHSSPLLSELVVVREWLHESAPSPASLDPGA-----TNGYWRFTRNA 154
                   789******************.566668999****************************************6665555543.....35********* PP

                   .SSHS...................HHSTTHHHH...SGGGS-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHT.....TSB-B. CS
  Nup84_Nup100  99 ikqkkrlrgvaassskekeeqlVtelDpDaplR...qgrkLdpkDeederallkaifellRaGkleeaielCketgqlwraaiLeG.....lklyh. 186
                   + q kr++           + lVtelDpDa++R   +++ L+p+D+ +e+a+l+a++ ++RaG+leea+elC++++q+wraa+++G     ++    
    CDO68941.1 155 LLQGKRTGR--------MGAGLVTELDPDAVNRdgvEEKGLAPDDAAYEKAVLQALYAHVRAGQLEEAAELCRKANQPWRAASIRGallfqWRAIAn 243
                   *99997764........4578************7655677**********************************************66666333336 PP

                   .....-TTTSGGGTT.-SS-BSBTTHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTS---H.HH...T-SHHHHHHHHHHHHHHHHHHHHHHH..... CS
  Nup84_Nup100 187 .....dpnideelde.keevegnksralWkrtcyklsknknldeyeraiyglLsGdlesvlkv...cksWedhLwaylnalleeqveqelrelvkkk 274
                        d   de++ + + +++gn +r+lWk++c +++ +++l++ era+y++L++  +++l     +++WedhLw  ++  +ee+++  l  + + +
    CDO68941.1 244 epreaDAMDDEDA-DdSHQWRGNVRRRLWKKVCCQAATSSSLSPTERALYAALAPSPQTALALksvARTWEDHLWTLVSLACEERLSAGLATIERDS 339
                   5555343333333.36***************************************555543332369*************************84433 PP

                   ........................TTSS-GGG--S-----.--HHHHHHHHHHH....SHH..HHHSCCHHHHHHHHCS-HHHHHHHHHHTTHH--- CS
  Nup84_Nup100 275 se.................seelpeeklsseelvlalpkp.asseeilnllsslsnervre..eaeeplriiqaaiIlddvdsllesladalskaak 351
                                      +             vl   ++ ++++e+ ++l+ lsn  v+e   a +p+++ q +iIld++d lle +a+ l++   
    CDO68941.1 340 FWesglgaleggvaavaagR------------DVLEEAETeEWEREVTQALEGLSNVAVAEgaPADNPYHVSQLHIILDRTDALLEAFASGLQDGT- 423
                   22699998777766444432............23333333344477888888886666665225778*************************9976. PP

                   --------TTSHHHHHHHHHHHHHHHHH...ST.TSS-HHHHHHHHHHHHHHHHHTT-GGGHHHHHTTGGGGGG-XXXXXXXXXXX...XXXXXXXX CS
  Nup84_Nup100 352 kdesenelleepdllRflaHlilflrllgksepeskeeeeakeniitaYislLreagkyeliplYvsfLpeeravevyskfLesit...dkeeRekq 445
                        +++ e+ ++ Rf+aHl+lfl+++++      +++ a++ i+++Y ++L++ag++eli++Y+ +L  ++ave y+ fL+s++   d +eR+ +
    CDO68941.1 424 ----YISSPEYTSMTRFFAHLCLFLQMIDIP-----VSPYATQVILESYLRVLEQAGQRELIAMYAGALG-DNAVERYALFLTSLElsaDINERRLA 510
                   ....68899*******************885.....9999999***************************.**************9999******** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Nup84_Nup100 446 LklakklgldveailkrtvervieeteseyepseeidiekeeelsedesevteeDlklirsleWllfedelyeealeqsnalirrFLlngklaaake 542
                   L++a+++gld+e+++  t+er+ie++ +   p +        ++s  e ++te++  l+rs+eW++f +++y++aleq+n+++r+ L +g+++ ak+
    CDO68941.1 511 LTRAREHGLDIERVAVVTAERTIEKAFTILPPAKGPLP----FISAMEPPPTEAEWLLVRSIEWTTFLESTYDTALEQANVILRYLLGHGRVQIAKS 603
                   ***********999999999999999885544444444....8888999************************************************ PP

                   XXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXX. CS
  Nup84_Nup100 543 lfkrlnpkdlikeydleeledeleeskdeleeeteeaareyleyealiealdaleewkkllsnskpkkkkqyeseklkewkqklkelvkqakelikn 639
                   l+++l p++l                   + +e+ee+a+eyl+y++++ ++dal+++ ++ ++++p    q+++++++ w +++k+l++qa+e++ +
    CDO68941.1 604 LLDML-PPELG------------------TLREPEEEATEYLHYRQFFAVWDALARVVECEALEQP----QMNKDTRAAWLSDYKSLIEQAREQVVK 677
                   *****.99999..................6789*********************************....69************************* PP

                   ....XXXXXXXX.XXXX.X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
  Nup84_Nup100 640 vLkfgWLvdlte.keeeeerkeeleelRqlyiPelileLhsvlvsartllsenlkealeLanvVAdeesklyevFsksg..rlkellqklaes 729
                   +L+++WLv++ e    +++r+++l ++Rq+yiPeli++Lhs+lv++r  ++en+k+al L+nvVAd++++lye+Fs++   rl ++l +++++
    CDO68941.1 678 LLTTDWLVNDAEtRAANAKRTRDLVRIRQIYIPELIIRLHSTLVNSRGRIPENVKHALLLVNVVADSRYRLYEDFSSQPgrRLGDYLGAVRQA 770
                   ************85555699*********************************************************9778*********996 PP

>> Nic96  Nup93/Nic96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.2e-06      0.02     112     226 ..     200     327 ..     183     343 .. 0.73
   2 ?   -4.2   0.1      0.46   4.2e+03       7      48 ..     630     672 ..     628     674 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHH..HCTTTT.............SS---TCCCHHHHHHHHHHTTT.-TTS.-HHHHHHHHHHH CS
       Nic96 112 aliyylLRaGdldeAlevvnenkeafrkldrsfaaylk..ayasse.............drrlpseleerlkleYnqrirnaseds.DpykkavYkiig 194
                 + +y  +RaG+l+eA+e++++ ++  r ++   a +++  a a+++             +++ + +++ rl ++   + +  +++s  p ++a+Y+ + 
  CDO68941.1 200 QALYAHVRAGQLEEAAELCRKANQPWRAASIRGALLFQwrAIANEPreadamddedaddSHQWRGNVRRRLWKKVCCQAA--TSSSlSPTERALYAALA 296
                 568999*************9988876665444444444336666668888888775555444444444444333333333..333458*********** PP

                 T--CCC-S-T.TC--SHHHHHHHHHHH---TT CS
       Nic96 195 rcdlsrknlhqevaktieDwlWlqLsliredd 226
                     +   l+ +va+t eD lW   sl++e+ 
  CDO68941.1 297 PSPQTALALK-SVARTWEDHLWTLVSLACEER 327
                 **99999999.**************9999976 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.46
                 HHHHHHHHHH...T....TTTS--.-............HHHHHH CS
       Nic96   7 qlleaWkllkelvgekpevkerefak..srqsaelrkrivegar 48 
                 q + +W++l+++v+ +  +++ ++ k  + +  +  k+++e+ar
  CDO68941.1 630 QFFAVWDALARVVECEA-LEQPQMNKdtRAAWLSDYKSLIEQAR 672
                 77889999999999886.56666555433334456778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 4644.37
//
Query:       CDO68942.1  [L=1007]
Description: hypothetical protein BN946_scf185000.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.9e-210  697.8   0.0   1.8e-208  693.6   0.0    2.1  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    2.1e-31  109.0   0.3    4.7e-31  107.8   0.3    1.6  1  Anticodon_1      Anticodon-binding domain of tRNA
    4.1e-16   58.7   0.0    5.8e-09   35.2   0.0    4.0  4  tRNA-synt_1g     tRNA synthetases class I (M)
    1.1e-11   44.6   0.1      2e-07   30.7   0.1    2.6  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
     0.0058   16.9   0.8     0.0058   16.9   0.8    3.8  4  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
     0.0093   15.3   0.0        0.3   10.4   0.0    2.5  2  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
  ------ inclusion threshold ------
      0.061   12.6   0.1       0.21   10.9   0.0    1.8  2  tRNA-synt_1b     tRNA synthetases class I (W and Y)
       0.11   11.3   0.0        0.3   10.0   0.0    1.6  2  tRNA-synt_1f     tRNA synthetases class I (K)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  693.6   0.0  8.1e-212  1.8e-208       2     601 ..     105     716 ..     104     717 .. 0.97

  Alignments for each domain:
  == domain 1  score: 693.6 bits;  conditional E-value: 8.1e-212
  tRNA-synt_1   2 lyekWeeedvfkkelekeke.kke..filvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklg 96 
                  +y++W+++++f ++l+++ e k+e  f+++ +PP+vtGslHiGhal+ +++d ++r++rm Gk++l+vpG+DhaG++++++vek+l +++  +r++lg
   CDO68942.1 105 WYDWWDAQGFFAPQLTEDGEiKPEgvFVIPSPPPNVTGSLHIGHALTVAIQDCLVRWNRMLGKTTLFVPGFDHAGISTQSVVEKRLLKTG-VTRHDLG 201
                  9*****************99888789************************************************************7766.6****** PP

  tRNA-synt_1  97 reefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk.......... 184
                  re+f++kv+ewk+ y+ +i++q++rlG s+D++r ++T+d+ l++av+e+f+rl+++g+iyr+++lvnw++kl+t+ls+lEve+k+ +          
   CDO68942.1 202 REAFVKKVWEWKEDYQGRITNQLRRLGGSYDWNRVAFTMDERLSKAVIETFCRLHEEGIIYRANRLVNWCVKLNTTLSNLEVEQKQLEgrtllgvpgy 299
                  ***************************************************************************************9********** PP

  tRNA-synt_1 185 ........dalihvafpladkeevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrk 274
                          ++++++a+p+++++e k+++aTT+PeT+lgdtavav+p+                               d+r+k+L+gk++++p+v+r+
   CDO68942.1 300 dpkekfefGVITSFAYPIEGSDE-KIIVATTRPETMLGDTAVAVHPQ-------------------------------DPRYKHLHGKFAKHPFVDRR 365
                  ***********************.***********************...............................******************** PP

  tRNA-synt_1 275 ipiiadd.yvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskk 370
                  ipii+dd  vd+e+GtG+Vki+Pahd++Dyevg ++nle+inil++dgt++e+a ++f+g+k+f+ar +vv++lk+ gl+++++++ +++p+c++s++
   CDO68942.1 366 IPIITDDiIVDMEFGTGAVKITPAHDPNDYEVGVRHNLEFINILNDDGTFNENAgEKFKGMKRFHARVAVVQALKDLGLYVETKDNPMQIPICSKSGD 463
                  ******9459*******************************************9789***************************************** PP

  tRNA-synt_1 371 piiyrateqWfvrvkeladaalkavekvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkaleke 468
                  +i++ +++qW+               + +++pk +e+++++wleniqdWciSRq+wWGhr+p+++ + ++ +  r++ k++v gr+ e+a+++a++  
   CDO68942.1 464 IIEPILKPQWWRT----------RAGELHITPKPSESEWYRWLENIQDWCISRQLWWGHRCPAYFVNIEGVEQDRNDGKNWVVGRTLEQATERAQKVA 551
                  ***********43..........345789***************************************99889999*************999997777 PP

  tRNA-synt_1 469 akdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSK 566
                    +k+     +le+d+dvlD+WFsSg+wp s++g+pe+ t++l+kf+pa++l++G+Di+++Wvar++ll+++lt++ Pf evl+h+++rd++GrKmSK
   CDO68942.1 552 GDRKF-----TLEQDDDVLDTWFSSGLWPWSIMGWPEN-TPDLQKFYPASILETGWDILFFWVARMVLLGIKLTDKMPFPEVLCHAMIRDAHGRKMSK 643
                  77777.....***************************9.*********************************************************** PP

  tRNA-synt_1 567 slgNvidpldvik.....................................kygadalRltli.lsdvgrdinl 601
                  slgNvidp+dvi+                                     ++g+dalR++l+ +s  grdinl
   CDO68942.1 644 SLGNVIDPIDVIQgldlealhaklyegnldereiqkakagqkkdfpkgipQCGTDALRFALCaYSGGGRDINL 716
                  **************************************************************9********98 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.3   2.1e-34   4.7e-31       1     114 [.     762     876 ..     762     912 .. 0.82

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 2.1e-34
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqr....e 92 
                  ++wil++ln +++e+++ ++e +f +a  a+y+f++ +lcd+y+e+ kp  + + a++  ++  q++l+++l+ +lrll+PfmP++tEelwqr     
   CDO68942.1 762 EKWILHKLNLAAAEINKQLAERNFMNATGAAYNFWLYELCDVYIEAMKPMTDES-ASETtKRsSQQTLYTCLDHGLRLLHPFMPYVTEELWQRlprrP 858
                  69***********************************************98654.44446677******************************86541 PP

  Anticodon_1  93 eeelgkkesimlaewpekaeel 114
                      ++  s+m+a++p +    
   CDO68942.1 859 ---NDSTPSVMVAKFP-TFVVY 876
                  ...35679********.44333 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.6e-12   5.8e-09       3     136 ..     133     284 ..     131     287 .. 0.78
   2 !    7.2   0.3    0.0008       1.8     208     238 ..     486     515 ..     470     524 .. 0.78
   3 !   10.6   0.0   7.7e-05      0.17     307     351 ..     620     664 ..     600     680 .. 0.76
   4 ?   -3.1   0.0       1.1   2.5e+03     344     367 ..     694     717 ..     691     721 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.6e-12
                   EEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHH....HTTS-HHHH.....H.......HHHHHHHHHHHHHTT- CS
  tRNA-synt_1g   3 vttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAe....kegvtpeel.....v.......ekvheeikelfkklni 83 
                   + ++ p ++g+lH+Gh+l+v + D+++R++r+ g+ +lfv g D+ G+ ++   e    k gvt ++l     v       e+++ +i++++++l+ 
    CDO68942.1 133 IPSPPPNVTGSLHIGHALTVAIQDCLVRWNRMLGKTTLFVPGFDHAGISTQSVVEkrllKTGVTRHDLgreafVkkvwewkEDYQGRITNQLRRLGG 229
                   677888999**************************************99877665111256777665521111311111114567788899999999 PP

                   --S..EEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  84 sfd..kygrttseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                   s+d      t +e+ +++v e f +l+e+g iy+ +  + +c+k +++l++ +ve
    CDO68942.1 230 SYDwnRVAFTMDERLSKAVIETFCRLHEEGIIYRANRLVNWCVKLNTTLSNLEVE 284
                   99933345699999999*******************************9998876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0008
                   HHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 208 envkkivkewlkegLkdlaisrdldwGipvP 238
                   +  ++    wl++ ++d++isr+l wG + P
    CDO68942.1 486 KPSESEWYRWLEN-IQDWCISRQLWWGHRCP 515
                   5556666789999.*************9998 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 7.7e-05
                   TT----S-EEEE--EEE--------------HHHHHHHH-HHHHH CS
  tRNA-synt_1g 307 aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllR 351
                    ++ +p+ ++       +g+K+SkS g+v+++ ++++ ld ++l 
    CDO68942.1 620 DKMPFPEVLCHAMIRDAHGRKMSKSLGNVIDPIDVIQGLDLEALH 664
                   455566655555556789*********************999985 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.1
                   HH-HHHHHHHHHHHS-TTS-EEE- CS
  tRNA-synt_1g 344 rldadllRYylaaeapekkDldfs 367
                   ++ +d+lR+ l+a +   +D++++
    CDO68942.1 694 QCGTDALRFALCAYSGGGRDINLE 717
                   5789***********999999875 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.1e-05      0.16      12      50 ..     313     351 ..     308     355 .. 0.88
   2 !   30.7   0.1   8.8e-11     2e-07      85     144 ..     353     413 ..     351     431 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
  tRNA-synt_1_2  12 iefkveeseeklevfttrpdtlfGvtfvalapehplvek 50 
                    + +++e+s+ek+ v ttrp+t+ G t va+ p+ p  ++
     CDO68942.1 313 FAYPIEGSDEKIIVATTRPETMLGDTAVAVHPQDPRYKH 351
                    67899**************************99986665 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 8.8e-11
  tRNA-synt_1_2  85 tglkaihPitgekipiwvanyvl.meygtgavmavPahdqrDfeFakkynlpikqvikped 144
                    +g +a hP+ +++ipi + + ++ me+gtgav   Pahd +D+e   ++nl+++++++ ++
     CDO68942.1 353 HGKFAKHPFVDRRIPIITDDIIVdMEFGTGAVKITPAHDPNDYEVGVRHNLEFINILNDDG 413
                    57899**************98777*******************************998544 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   2.3       3.3   7.3e+03      36      58 ..      20      42 ..      18      48 .. 0.80
   2 ?   -2.6   0.0       3.1   6.9e+03       7      26 ..     272     291 ..     269     299 .. 0.80
   3 ?    1.3   0.1      0.19   4.4e+02      13      34 ..     766     787 ..     763     791 .. 0.91
   4 !   16.9   0.8   2.6e-06    0.0058       1      64 [.     938    1001 ..     938    1003 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.3
  Val_tRNA-synt_C 36 APaeVVeeekaklaeleeqaekl 58
                     APa +    ++kla+ +e +++l
       CDO68942.1 20 APAPITKSAEKKLAKKKENEARL 42
                     88888888889999988888877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.1
  Val_tRNA-synt_C   7 aRLeKeLaklekeiervqkK 26 
                       +L+ +L++le e ++++++
       CDO68942.1 272 VKLNTTLSNLEVEQKQLEGR 291
                      68888999999999999887 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.19
  Val_tRNA-synt_C  13 LaklekeiervqkKLanpgFve 34 
                      L kl+  +++++k La  +F++
       CDO68942.1 766 LHKLNLAAAEINKQLAERNFMN 787
                      78999999************96 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2.6e-06
  Val_tRNA-synt_C    1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLsk 64  
                       D+++e+++ eK+La ++  + ++ k  + +++ + +Pa+V  ++++k ++le+  + l+  +++
       CDO68942.1  938 DIDSEITKCEKKLALAQMNLSKIVKTESQEDYGSTVPANVRLANEEKRKTLEADVQLLEHSIEM 1001
                       9******************************************************999998876 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.052   1.2e+02      18      51 ..     139     172 ..     133     222 .. 0.92
   2 !   10.4   0.0   0.00013       0.3     242     282 ..     629     669 ..     603     680 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.052
                   BTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEE CS
  tRNA-synt_1e  18 tvydashlGhaRslvafDilrrilqalgYdvqfv 51 
                    v    h+Gha ++ + D l r+ ++lg    fv
    CDO68942.1 139 NVTGSLHIGHALTVAIQDCLVRWNRMLGKTTLFV 172
                   678899*****************99999888887 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00013
                   EEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 242 lhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                    h+ +   +g+kmsksL+n+i   dv++  d ++l   l++
    CDO68942.1 629 CHAMIRDAHGRKMSKSLGNVIDPIDVIQGLDLEALHAKLYE 669
                   5666666789*******************999999877765 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.95   2.1e+03      15      24 ..     141     150 ..     140     187 .. 0.85
   2 ?   10.9   0.0   9.3e-05      0.21     179     210 ..     621     650 ..     608     656 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.95
                   SSS-BGGGHH CS
  tRNA-synt_1b  15 TgklHlGylv 24 
                   Tg+lH+G+ +
    CDO68942.1 141 TGSLHIGHAL 150
                   9******754 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.3e-05
                   TTSS-EEEEET-BBSTTSSSBTTCETTCGC-B CS
  tRNA-synt_1b 179 vfkkpegltvplltgldGekKmSKSagnsaIf 210
                   +++ pe+l + ++ ++ G  KmSKS gn +I+
    CDO68942.1 621 KMPFPEVLCHAMIRDAHGR-KMSKSLGN-VID 650
                   457799*************.********.775 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   2.5e+03      34      62 ..     141     169 ..     139     176 .. 0.82
   2 ?   10.0   0.0   0.00013       0.3     264     304 ..     623     663 ..     618     678 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
  tRNA-synt_1f  34 SGliHiGnlrevltadlvaralrkrgeev 62 
                    G++HiG +  v+  d+++r  r +g+++
    CDO68942.1 141 TGSLHIGHALTVAIQDCLVRWNRMLGKTT 169
                   699*********99999999888777766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00013
  tRNA-synt_1f 264 eaPekvvYelillkggekmssSkGnvltledwlevaepevl 304
                   + Pe ++ ++i + +g+kms+S Gnv+ + d+++ +  e l
    CDO68942.1 623 PFPEVLCHAMIRDAHGRKMSKSLGNVIDPIDVIQGLDLEAL 663
                   5699999**********************999987777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.57
# Mc/sec: 5344.34
//
Query:       CDO68943.1  [L=318]
Description: hypothetical protein BN946_scf185000.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-18   66.3   0.0    1.1e-14   54.7   0.0    2.3  2  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
       0.07   12.9   0.1       0.13   12.0   0.1    1.4  1  DUF3799   PDDEXK-like domain of unknown function (DUF3799)


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.2e-18   1.1e-14      80     127 ..       1      48 [.       1      50 [. 0.97
   2 !   10.4   0.0   4.1e-05      0.37     215     241 ..      48      74 ..      47      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.2e-18
       RVT_2  80 ldvdsafLnaeldeevyvkqPpGfeidreeekvykLnkslyGlkqapl 127
                 +dv++afLn++l+ee+y+ qP G ++ ++e++v+ L+k++yGlkqa+ 
  CDO68943.1   1 MDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASQ 48 
                 9*********************************************85 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.1e-05
       RVT_2 215 klsladyiakvvkkfeltdaktvatPl 241
                 ++ +++yi++v++ f+++d+k+  tPl
  CDO68943.1  48 QIDQEEYIQSVIERFDMADCKPARTPL 74 
                 57899********************97 PP

>> DUF3799  PDDEXK-like domain of unknown function (DUF3799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.4e-05      0.13      91     144 ..       6      60 ..       2      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                 HHTTS.EEEEEEEEEETTEEEEEEEEEEET.TTEEEEEEEES-SS--EEETTTE. CS
     DUF3799  91 kllsG.ekevivtgelfgvewkikiDllnpekkyivDlKttkdiskkkfnedaak 144
                  +l+G  +e i++++ +g   ++k D++ + kk+i  lK +++i+++++ +++ +
  CDO68943.1   6 AFLNGdLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASQIDQEEYIQSVIE 60 
                 4788999******************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2114.30
//
Query:       CDO68944.1  [L=1106]
Description: hypothetical protein BN946_scf185000.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-21   75.8   0.0    1.6e-20   73.5   0.0    2.2  2  rve              Integrase core domain
    8.7e-18   64.6   0.0    1.5e-17   63.8   0.0    1.3  1  DDE_1            DDE superfamily endonuclease
    4.8e-11   42.5   0.1    3.7e-10   39.6   0.0    2.3  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    4.7e-09   36.0   0.7    1.6e-08   34.3   0.1    2.2  2  gag_pre-integrs  GAG-pre-integrase domain
    0.00018   21.2   1.0    0.00083   19.1   0.0    2.6  3  rve_3            Integrase core domain
    0.00046   20.0   0.0     0.0011   18.8   0.0    1.6  1  DDE_3            DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   3.2e+03      54     100 ..     167     213 ..     162     216 .. 0.80
   2 !   73.5   0.0   5.4e-24   1.6e-20       2     115 ..     957    1072 ..     956    1075 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
         rve  54 lleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 +l +a ar+  + p+ ++ D   + +s ++r+++ ++++++ + +p+
  CDO68944.1 167 FLPQANARRESEAPLLLILDGHNSHISPELRQLAIKNNVHLFLLPPH 213
                 5556666777766999999999999999*****99999988777776 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 5.4e-24
         rve    2 trpgelwqvDvt.vvripdggg.kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsf 96  
                  t+p el+++D+   +r ++ g+ ++y++ ++ddfs+l +a++l++++da  +++  ++ ++ + g++++rv+sD+g ey s++f++ l dlgi+++ 
  CDO68944.1  957 TEPLELVHTDLDgPMRTASVGSgFLYFASFIDDFSGLGIAYFLKRKSDAMKAFDNFKAWAETQTGKKIKRVRSDRGGEYLSNEFTQHLLDLGIEHQK 1053
                  789********998887777666************************************************************************** PP

         rve   97 trpgrpqdnGkvErfhrtl 115 
                  + p +pq+nG++Er +rt+
  CDO68944.1 1054 SMPDSPQQNGRAERWNRTI 1072
                  ******************8 PP

>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0     5e-21   1.5e-17       3     139 ..     106     244 ..     104     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 5e-21
       DDE_1   3 rltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWL.kvfdkrle...aekrkilLlldssrshetvel.lese 96 
                 +l+++l++ +a+++ L p  i+ ++++ +  +    +    v +  + ++w+   + +eW+ k f ++ +   + +   lL+ld+++sh   el +   
  CDO68944.1 106 ELVTILECDSADGHALAPGFIFAGSQLPSDNF---RDIDPRVVIAHSPNGWTEGFLCTEWFrKCFLPQANarrESEAPLLLILDGHNSHISPELrQLAI 201
                 57889************************999...889999****************************988666677899*************88899 PP

       DDE_1  97 lqniklvflPassasllqPldqgvvselKarYrrqllqallee 139
                 ++n++l+ lP++++++lqPld+g++s++++ + +  +q+  + 
  CDO68944.1 202 KNNVHLFLLPPHTTHRLQPLDVGIFSHIQNAWVKRCNQYYSKS 244
                 9***************************999988888877654 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1         4   1.2e+04      66      79 ..      45      58 ..      42      59 .. 0.79
   2 !   39.6   0.0   1.2e-13   3.7e-10      21     136 ..     553     671 ..     519     673 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4
  Retrotran_gag_2 66 svadhinkleelvn 79
                     +v dh++kl+ +++
       CDO68944.1 45 TVDDHFKKLKAVID 58
                     78999999998876 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 1.2e-13
  Retrotran_gag_2  21 lelvkeektakevWdkLkelyekksaankltlrkklfslk.mkegesvadhinkleelvneLsalgvkiddedkvvllLasLPesyetfvtaie 113
                       +++  + +ak++Wd Lk+++   ++a  + l+  + +l  ++++  ++d + +  + +++ s+ g  ++++ ++v +L++LP+sy+t+ t + 
       CDO68944.1 553 KKRIAASYSAKDMWDVLKKEFGTPDTAEAIGLLMSFSNLPpITDTRPLRDQLGTYITRIRDASNGGMHFTESQQAVFILMKLPPSYSTLSTSLT 646
                      57788999******************************95489999************************************************ PP

  Retrotran_gag_2 114 s..seedltleevieklleeeerrk 136
                      s  + +d t+e ++ k+l ee+ r+
       CDO68944.1 647 SshPLKDWTIEWIQGKVLAEESLRS 671
                      *********************9876 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.81   2.4e+03      26      31 ..      13      18 ..       9      26 .. 0.73
   2 !   34.3   0.1   5.3e-12   1.6e-08      20      67 .]     896     944 ..     879     944 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.81
  gag_pre-integrs 26 lWHrRL 31
                      WH+R+
       CDO68944.1 13 KWHKRF 18
                     6****9 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.3e-12
  gag_pre-integrs  20 nkssinlWHrRLGHpsfsrlkkLfkkgl.lpglkisksevCeaCqlgKq 67 
                      +k++ + WHrR+GH + ++l++L k+   ++ +++ ++e Ce C++gK+
       CDO68944.1 896 SKTDYKTWHRRFGHAGKEALRHLPKNVKgVDHVDPADDEPCEGCAFGKS 944
                      578899******************8522466667788***********6 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.4     7e+03      39      54 ..      46      61 ..      41      62 .. 0.81
   2 ?   -1.8   0.1       0.9   2.7e+03      15      35 ..     230     250 ..     228     277 .. 0.72
   3 !   19.1   0.0   2.8e-07   0.00083       2      56 ..    1048    1104 ..    1047    1104 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.4
       rve_3 39 laearekleawredYN 54
                +++  +kl+a +++YN
  CDO68944.1 46 VDDHFKKLKAVIDEYN 61
                5667789999*****9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.9
       rve_3  15 qNglvEsfngtlrdellneel 35 
                 qN++v + n+ + + l  e +
  CDO68944.1 230 QNAWVKRCNQYYSKSLGREMS 250
                 899999999888777666655 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 2.8e-07
       rve_3    2 gielsyiapgkPqqNglvEsfngtlrdellneelfrslae..arekleawredYNte 56  
                  gie++ + p +PqqNg +E+ n+t+ +++ ++ +   l++   + ++ea+++ YN++
  CDO68944.1 1048 GIEHQKSMPDSPQQNGRAERWNRTIIEKAMSMLHHAGLSHgfWQIAVEAAVHIYNHQ 1104
                  89***********************99999987744444433799999999999985 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.6e-07    0.0011      65     116 ..     164     214 ..     152     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.6e-07
       DDE_3  65 ae.flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpyS 116
                 ++ fl + + +++++ ++ lilD+++ H s +lr+l+ +   +++l+ lPp+ 
  CDO68944.1 164 RKcFLPQANARRESEAPLLLILDGHNSHISPELRQLAIK--NNVHLFLLPPHT 214
                 4448889999999999********************999..*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 7616.08
//
Query:       CDO68945.1  [L=183]
Description: hypothetical protein BN946_scf185000.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1248.07
//
Query:       CDO68946.1  [L=840]
Description: hypothetical protein BN946_scf185000.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-96  323.0   0.0    5.4e-96  321.8   0.0    1.6  2  BRO1            BRO1-like domain
    9.2e-57  192.6   8.1    2.4e-56  191.2   8.1    1.8  1  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.8   0.0    6e-100   5.4e-96       2     348 ..       5     349 ..       4     371 .. 0.92
   2 ?   -2.9   0.0      0.25   2.3e+03     208     262 ..     441     493 ..     439     507 .. 0.60

  Alignments for each domain:
  == domain 1  score: 321.8 bits;  conditional E-value: 6e-100
                 XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.XX CS
        BRO1   2 lsiplKkteekevdlkkpLknyIsetygsqdpeafeddlaelnklRqdavrksankdsesglelllkYyaqLellelrfpieeqslkveFtWydaf.ss 99 
                 l+ip+K+t    + +++++++y+ +++ +++p+a++ d+  ++klR +a+++     + ++++++++Y+aqL ++ +++p++   +++e ++ +af ss
  CDO68946.1   5 LAIPFKRT--YIIPIRQAVRDYLLSHHRDTHPDAYRWDIGHWEKLRAEATSGGL---HVDRVKACISYHAQLVYILTKLPAD---IGLEIPYAPAFdSS 95 
                 79******..67***************99*******************998755...789*********************8...7**********866 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 100 skkvtqsslafEkasvLFniaalysqlaasqnrstdeglkrackyfqqAAgvfqylkenflhapte........eesedlspetlkaLeklmlAqAqec 190
                   +v+ ++l +E+a+vLFn+aalysql+++++rs++eglk+a+ky+q+AAg+++yl +++l + ++        +e +d+++ ++k+Le+lmlAqAqec
  CDO68946.1  96 ALPVSLNNLIYERAAVLFNLAALYSQLGSAEDRSKPEGLKQAIKYYQSAAGALAYLHDTVLPQLHAspystnseDEITDFTEPFIKTLEYLMLAQAQEC 194
                 889*******************************************************99998877999999997779********************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 191 flekaikdnkkdsliaKlaaqvaelYeealealkkselidekeevlkklldksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellke 289
                 ++++a++dn+k++liaKlaa+va +Y +al+++k ++ + +           s  +  +  ++hf+A+aqyr++l+++ea  yG+eiarl +A+  +k+
  CDO68946.1 195 VWQRAVMDNYKNGLIAKLAAKVAAFYGTALQYVKGAQSSVK-------RAFPSVGSSESSPHYHFQAAAQYRKSLEDLEAHHYGHEIARLSEAQLFAKQ 286
                 *****88**************************65444333.......4445788888999************************************** PP

                 XX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 290 alkskkaeel....ledlkglkdvveeklkeaekDNdlIYheevPsesslpeikkaslvkaip 348
                   + ++++ +    l+d+k+l d+v+++l++ae+DNdlIYh++vP+  slp+i ++++++++ 
  CDO68946.1 287 GYDIARRGGVapavLQDIKSLLDIVQKNLARAERDNDLIYHQDVPPGPSLPPIAEVTMAQPLI 349
                 *6666666556666**********************************************964 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.25
                 XXXXXXXXXXXXXXXXX.......XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 208 laaqvaelYeealealkkselidekeevlkkl.ldksWikhvqvKashfkAlaqyr 262
                 la++v++l +eal+ l +++ +de  +  +++ ++ + +  v++ +++ + + q+r
  CDO68946.1 441 LANHVSSLLDEALDVLDQEADEDE--ALRESHpIP-DRLPSVEANKELVSRAQQFR 493
                 788999999999999976665555..333333233.33344444444444445555 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   8.1   2.6e-60   2.4e-56       1     295 []     410     722 ..     410     722 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.2 bits;  conditional E-value: 2.6e-60
  ALIX_LYPXL_bnd   1 glPpsllekaeevrsqgglqrlekllqdlqelkerneeiLdeieklLdeEesedeklrakygtrWtrqpSseltaelraelqkyreileeAsesD 95 
                     glPpsll+++eevr + g++r+e  + d+q l++ + ++Lde+ + Ld+E++ede+lr+ +    +r pS e+++el +++q++r+ le+A esD
      CDO68946.1 410 GLPPSLLKRVEEVRLESGPDRIETYIRDVQALANHVSSLLDEALDVLDQEADEDEALRESHPI-PDRLPSVEANKELVSRAQQFRQVLEQARESD 503
                     69**********************************************************988.8999*************************** PP

  ALIX_LYPXL_bnd  96 kivrqklqenkedlelLsgpeeeleaalpssssa.....aasesveeqirklrsllekldelkaereqllkdlkekaendDitpklltekkr... 182
                     + vrqk++e++e +  L++pe++le+++pss+ +     ++ + +  ++r lr l+e++d+l ++r++l+ ++   a +dDit+++  +++    
      CDO68946.1 504 ALVRQKWEEWEECIIQLTWPEADLERSIPSSTVSfgqhaTIADPTRVHARALRALMEQVDDLSKARKELVARVDRLASTDDITQRISGAASGmeq 598
                     *****************************998878875433778899999********************************9988766666899 PP

  ALIX_LYPXL_bnd 183 ..diaanefealfeeelekydplqeqleqslakqeellkeiq....................eaneefeqskksdseqsqrqreevlqkleaayd 255
                       ++++++fe++++eel+kyd ++ qle++ +kqeell+ i+                    e +++f qs+k+d   s       lq+l++ay+
      CDO68946.1 599 wvNVQPAMFEDVLDEELSKYDRYRIQLEENGEKQEELLRSIKaglfyslftrtapssrlwsqERHAQFIQSRKEDV--SXXXXXXXLQALDLAYH 691
                     999**************************************999999999999999999999************99..789999*********** PP

  ALIX_LYPXL_bnd 256 kykelksnleeglkFYndltelleklqkkvkdfvfaRrtE 295
                     kyke+         FYnd++++l++++ ++k+f  +R++E
      CDO68946.1 692 KYKEI---------FYNDFSAILSEFRASCKEFAATRKQE 722
                     *****.........************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5791.64
//
Query:       CDO68947.1  [L=273]
Description: hypothetical protein BN946_scf185000.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-32  111.5   0.0    2.9e-32  111.1   0.0    1.2  1  DUF3421   Protein of unknown function (DUF3421)
  ------ inclusion threshold ------
       0.39   11.4   9.8       0.68   10.7   9.8    1.4  1  IMUP      Immortalisation up-regulated protein
        3.6    7.1  16.2        4.7    6.7  16.2    1.1  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> DUF3421  Protein of unknown function (DUF3421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   4.8e-36   2.9e-32       3     114 ..     147     261 ..     144     262 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 4.8e-36
                 TSBEEEEEEEEETTEEEEEEE-TTSSS.EEEEETTEEEEE.SEEEEEETTSB-EEEEEEEETT---........TTB-EETTEEEEEEEETTEEEEEEE CS
     DUF3421   3 dgspiYvgRakhegsvlpgkvvpekka.ayvsyggkehek.seyevLvakdpseleWvpssdgqvpkg..AvegGrsedgepLyigrakvegslvpGkv 97 
                 + +p+Y+g+a +++sv+p+k+vp+ ++ a+vsygg e e+ ++y++L+ +dps +eWvp+ +g++p g  +vegG++e+ge+Ly++ a+ +g+ vpGk+
  CDO68947.1 147 GRTPVYIGSALFAKSVHPCKIVPSFNPpARVSYGGVEQEHrGRYDLLP-FDPSLMEWVPTDHGRIPYGrrPVEGGYEENGEKLYHALANLQGVKVPGKT 244
                 5689*********************999************66******.9****************8778***************************** PP

                 ETTTTEEEEEETTEEEE CS
     DUF3421  98 hpshkvayipyggkEvs 114
                   + + a++p+gg+E++
  CDO68947.1 245 GVHLRGANVPFGGQEHT 261
                 ***************97 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   9.8   0.00011      0.68      47      72 ..       5      30 ..       1      43 [. 0.51

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
        IMUP 47 ghgkssssdsssssssssdsdaeakp 72
                ++ +s ss+sssssssssd +++ k 
  CDO68947.1  5 SRRRSRSSSSSSSSSSSSDEEKKWKK 30
                33233344444445556666655443 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  16.2   0.00079       4.7      70      99 ..       5      34 ..       1      40 [. 0.49

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00079
       SR-25 70 sssssssssssssssssddrkkrgkkkdkk 99
                s   s sssssssssss+d++k+ kkk+k+
  CDO68947.1  5 SRRRSRSSSSSSSSSSSSDEEKKWKKKNKH 34
                333444444444555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1900.69
//
Query:       CDO68948.1  [L=438]
Description: hypothetical protein BN946_scf185000.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-12   46.7  15.2    1.5e-05   25.2   8.7    4.0  3  WLM              WLM domain
    0.00041   20.5   0.3    0.00085   19.4   0.3    1.5  1  DUF45            Protein of unknown function DUF45
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.23   11.4   0.0    1.4  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.6e-08   0.00016       2      46 ..      16      62 ..      15      62 .. 0.89
   2 !   25.2   8.7   2.5e-09   1.5e-05      90     190 ..      61     218 ..      59     219 .. 0.75
   3 ?    1.2   0.1     0.057   3.4e+02     144     169 ..     369     394 ..     342     411 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.6e-08
         WLM  2 kiseikvlk..kkpekeaalellkriakdvqpimkkhkfkVglLtEl 46
                +i  i+ lk  +   +e+a++ll+ +a++v+pimk ++f V++  El
  CDO68948.1 16 HINFITPLKydDTAAEEEARQLLRALAAQVRPIMKAEGFVVNSFEEL 62
                6778889996667899**************************99986 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 2.5e-09
         WLM  90 ELaHnvygpHdakFyallkeLekeveelkakGlk.egflkeGkrlggkevrnksa..eeeeekealekagiagkgarlGgrseekt............. 172
                 ELaH+++ +H + F al+ +L+++v el+ kG++ +g+ ++G rl +++    +   ++e  +   + a+++ +   lG r+  ++             
  CDO68948.1  61 ELAHIKHMNHGSAFQALWAKLRNDVRELQRKGYYgDGYWSSGIRLADSAPIGGHGheAVELPEFMCGGAQSRARPTALGRRRRRRQqagpsnhtgaqta 159
                 9*********************************************99988776644555556666777777888888877773333455566666666 PP

         WLM 173 .........................................rskasareliaaAaerRl 190
                                                          ++ + are  a AaerRl
  CDO68948.1 160 krrkagsrvtaqgtfkgsgralnedltdedakkagagfrkkAASKRAREERALAAERRL 218
                 66677777777777777777777777777777777777766666667777777777775 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.057
         WLM 144 eeeeekealekagiagkgarlGgrse 169
                 + e + ++ e+ g++g g+rlGg+ +
  CDO68948.1 369 QDEMQTRKKESLGMTGAGRRLGGTPS 394
                 45567777788889999999999877 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   1.4e-07   0.00085     173     202 ..      61      90 ..      59      91 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-07
       DUF45 173 ElaHlleknHskrFwalvekllPdwkeakk 202
                 ElaH++++nH+++F+al +kl +d++e+++
  CDO68948.1  61 ELAHIKHMNHGSAFQALWAKLRNDVRELQR 90 
                 9************************99987 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.8e-05      0.23      23      95 ..      12      85 ..       3      98 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.8e-05
  2_5_RNA_ligase2 23 rwppHitLlypfvededl..adlaellsrlaketepfe.vrldgfgvFehkksvvylsv.sdsealqalraalleal 95
                     +  pHi+ + p ++d++   +++++ll++la++  p+  ++   +++Fe+    ++++  +  +a+qal a+l++++
       CDO68948.1 12 NPNPHINFITPLKYDDTAaeEEARQLLRALAAQVRPIMkAEGFVVNSFEE---LAHIKHmNHGSAFQALWAKLRNDV 85
                     345*************9999999999999999999843255555555554...444444444555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2946.58
//
Query:       CDO68949.1  [L=675]
Description: hypothetical protein BN946_scf185000.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-157  522.1   0.1    4.1e-80  269.2   0.0    2.1  2  PFK       Phosphofructokinase
  ------ inclusion threshold ------
      0.024   14.6   0.0       0.12   12.4   0.0    2.2  2  DUF1932   Domain of unknown function (DUF1932)
      0.093   12.4   0.0       0.17   11.6   0.0    1.3  1  PapJ      Pilus-assembly fibrillin subunit, chaperone


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.2   0.1     2e-78   1.2e-74      88     284 .]       2     221 ..       1     221 [. 0.97
   2 !  269.2   0.0   6.8e-84   4.1e-80       1     283 [.     301     589 ..     301     590 .. 0.94

  Alignments for each domain:
  == domain 1  score: 251.2 bits;  conditional E-value: 2e-78
                 HHHT--EEEEEESHHHHHHHHHHHHT..T.....................--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
         PFK  88 kklgidaLvviGGdgslkganklseerkgllee.................lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfv 169
                  k+gidaLvv+GGdgsl+ga+ ++ e+++l++e                 lkivg++++idND+ +td+tiG+ TAl++i+e+id+++sta+sh+r+fv
  CDO68949.1   2 IKEGIDALVVCGGDGSLTGADVFRAEWPKLVAElrqqnkiteeqatqhahLKIVGLVGSIDNDMSMTDLTIGAPTALHRICESIDNINSTATSHSRAFV 100
                 689**************************9999****************************************************************** PP

                 EEES-TT-THHHHHHHHHHT-SEEE-TTS---HH....HHHHHHHHHHT.T-S-EEEEEESSS..S-.....HHHHHHHHHHHHSS-EEEEE-GGGGG- CS
         PFK 170 vEvmGrncGwlAlmaglaggadvilipEepfdie....eliekikklrkkgkkksiivvaEgakdkeg..iiaeelakeieektgievrvtvlGhlqrG 262
                 +EvmGr+cGwlAlmag+++gad+i+ipE+p+d +    e+++ i+++r+ gk+k++++vaEga+d++   i a++++++++e++g+++rvt+lGh+qrG
  CDO68949.1 101 LEVMGRHCGWLALMAGVSCGADFIFIPESPPDADrwedEMCQMIQRHRDVGKRKTLVIVAEGAHDSKLqpIRADFVKDVLSERLGLDTRVTTLGHTQRG 199
                 *********************************9999***********99**************766689***************************** PP

                 S---HHHHHHHHHHHHHHHHHH CS
         PFK 263 gspsafDrilatrlGikavell 284
                 g+p+a+Dril t+ G++ave+l
  CDO68949.1 200 GKPCAMDRILPTLQGVEAVEAL 221
                 *******************986 PP

  == domain 2  score: 269.2 bits;  conditional E-value: 6.8e-84
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGlieeeiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvviG 99 
                 r+ai+++G++a GmNaa+ a+vr++i++g+++++i++Gf Gl+++++++l++  v++++++gG+ Lg++R+++     ++ ++a+++++++++aL++iG
  CDO68949.1 301 RVAIMHVGAPAGGMNAATCAAVRYCIRQGHKPFAIQNGFVGLLDDNVHQLSWLGVDNWMTRGGSELGTNRKQPDI---DLGAVAAKFQHYNFHALIMIG 396
                 79***********************************************************************64...59******************* PP

                 SHHHHHHHHHHHHT..T.....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEES-TT-THHHHHHHHHHT-SEEE-T CS
         PFK 100 Gdgslkganklseerkgllee.lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.krvfvvEvmGrncGwlAlmaglaggadvilip 196
                 G+++++ ++ l++ rk+++++ +++v++P+Ti+N++p t++++G+dT+ln +v+a+d++k++a+++ +rvfvvE++G++cG++A+m++la+ga ++++p
  CDO68949.1 397 GFEAFSSLQILEQGRKHYPAFnIPMVHLPATISNNVPLTEFSLGSDTSLNALVDACDAIKQSASASrNRVFVVETQGGKCGYIATMGALATGACIVYTP 495
                 ***************9999878*****************************************9999******************************** PP

                 TS---HHHHHHHHHHHH.......T.T-S-EEEEEESSS..S-...HHHHHHHHHHHHSS..-EEEEE-GGGGG-S---HHHHHHHHHHHHHHHHH CS
         PFK 197 Eepfdieeliekikklr.......kkgkkksiivvaEgakdkegiiaeelakeieektgi..evrvtvlGhlqrGgspsafDrilatrlGikavel 283
                 E+ + ++ l +++k l+       k ++++++++++E a++   +++e ++k+++e+ g   ++r + lGh+ +Gg ps++Dr  a rl  k++ +
  CDO68949.1 496 ERGIGLDMLRNDVKFLKrryaldaKGRSEGRLVLRNEVASQ--VYTTEVITKMFKEEGGElfDSRSASLGHTLQGGIPSPMDRARAVRLSLKCMAF 589
                 **************99988887633234455********85..4679999999977666567******************************9976 PP

>> DUF1932  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05      0.12      28      56 ..     125     153 ..     124     181 .. 0.83
   2 ?   -3.0   0.0       1.2   7.3e+03      46      60 ..     543     555 ..     541     561 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHCTTS- CS
     DUF1932  28 gltgmppkAyRwveEMeeiaetlaeegle 56 
                 +++ +pp A Rw +EM +  + ++++g  
  CDO68949.1 125 FIPESPPDADRWEDEMCQMIQRHRDVGKR 153
                 5899*********************9943 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 HHHHHHCTTS--HHH CS
     DUF1932  46 iaetlaeeglepqmf 60 
                 i ++++eeg+  ++f
  CDO68949.1 543 ITKMFKEEGG--ELF 555
                 889*****96..454 PP

>> PapJ  Pilus-assembly fibrillin subunit, chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.17      37      77 ..     461     501 ..     441     551 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
        PapJ  37 adesrhqwvnernGriGsLnvkGaLvssPCiLetpevklpL 77 
                 a  +r + v+ ++G+ G ++  GaL +  Ci+ tpe  + L
  CDO68949.1 461 ASRNRVFVVETQGGKCGYIATMGALATGACIVYTPERGIGL 501
                 66788889999************************955544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4287.42
//
Query:       CDO68950.1  [L=413]
Description: hypothetical protein BN946_scf185000.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.05   13.5   1.7       0.59   10.0   0.0    2.6  2  KilA-N      KilA-N domain
       0.92    8.8   7.1        1.7    8.0   7.1    1.4  1  DUF4407     Domain of unknown function (DUF4407)
        4.5    7.0   9.8        8.1    6.2   9.8    1.4  1  SKA1        Spindle and kinetochore-associated protein 1


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.9e-05      0.59      64      91 ..     106     133 ..      61     138 .. 0.66
   2 ?   -2.5   0.5      0.77   4.6e+03      41      60 ..     291     311 ..     289     337 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.9e-05
      KilA-N  64 ktisenrkakpgrlqGtYvhpdlalava 91 
                  ++s  +k+ + r++Gt+v pd al++a
  CDO68950.1 106 FDTSGANKSGKARFAGTWVNPDVALYLA 133
                 344556789999*************999 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.77
      KilA-N  41 kstkelleeleedynise.kk 60 
                 ++ kel+++l+ ++   + +k
  CDO68950.1 291 QEQKELIAKLKAEREAAKaQK 311
                 567888888888877764443 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.1   0.00028       1.7     130     187 ..     279     342 ..     254     393 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00028
     DUF4407 130 a......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake 187
                 a      ++++++e ++ ia+l+ae +aa+a+ +++++e ++e ++ + + +++   +  +ak+
  CDO68950.1 279 AkiaepdMQEDIQEQKELIAKLKAEREAAKAQKQQQQEEEDSEPSPSQHEAEQALSEESSSAKR 342
                 13444459999******************************99999776665555555555555 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.8    0.0013       8.1      41     122 ..     285     366 ..     256     379 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  41 klkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeeaekakkpkk 122
                 ++++ +qe++e+i klk+e ea   q+++ q  ++  ps  +++ ++  +ees+s++++ eee ++ + k +e+++++  ++
  CDO68950.1 285 DMQEDIQEQKELIAKLKAEREAAKAQKQQQQEEEDSEPSPSQHEAEQALSEESSSAKRPREEEPQELRFKFKEPGQSEDASQ 366
                 5677777777777777777777666666666666666665555555555555555555555544444445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2384  (0.132969); expected 358.6 (0.02)
Passed bias filter:                     1037  (0.0578393); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.41s 00:00:01.39 Elapsed: 00:00:00.59
# Mc/sec: 2116.40
//
Query:       CDO68951.1  [L=233]
Description: hypothetical protein BN946_scf185000.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1642.31
//
Query:       CDO68952.1  [L=941]
Description: hypothetical protein BN946_scf185000.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00086   17.8  38.3     0.0014   17.1  38.3    1.2  1  MAD              Mitotic checkpoint protein
     0.0017   16.6  16.8     0.0017   16.6  16.8    2.5  3  EzrA             Septation ring formation regulator, EzrA
     0.0099   15.9   9.8     0.0099   15.9   9.8    5.3  6  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
        1.5    7.7  16.1        2.5    6.9  16.1    1.3  1  LMBR1            LMBR1-like membrane protein
        1.5    7.1  19.0        2.2    6.5  19.0    1.1  1  SpecificRecomb   Site-specific recombinase
        1.9    8.9  40.5       0.38   11.2  19.8    2.8  2  Fez1             Fez1
        2.8    8.0  14.7        1.2    9.1   1.0    2.8  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
        5.6    7.1  16.1        3.4    7.8  10.6    2.9  3  Cob_adeno_trans  Cobalamin adenosyltransferase
        8.4    6.0  43.5         14    5.3  36.0    2.9  3  Lebercilin       Ciliary protein causing Leber congenital ama
        9.8    7.0  16.9         33    5.3   0.1    3.9  2  FliD_N           Flagellar hook-associated protein 2 N-termin


Domain annotation for each model (and alignments):
>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1  38.3   8.1e-07    0.0014      51     234 ..     348     533 ..     337     540 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.1e-07
         MAD  51 qelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaearevisalknelaelkrqiekqelelsekeseleelqerldllkkkls 149
                  ++q+r+ +l++      e +r+ +E +r+++  l++ ++++++ + +l+ear   sa k e +el+ + +++  ++ + e+e+ +lq+ ld  +  ++
  CDO68952.1 348 LDMQERLDALQRAN---TELSRKLLEAERTLQNRLAEHEQELEDMQGRLEEARSELSATKREEKELRSKERQNSTQIAALETEIAKLQKSLDTARSSYQ 443
                 56777777776554...4556778999999999***************************************************************999 PP

         MAD 150 eleqli....qqlekkqkelaeaeqrikeLefeiqsqeddslivknsksel.aripelekelerlreenkklnelkenkelLkEevedlk 234
                  l++++    ++ e   ++l  ++q ik+L+   q+q+ + +     +s+  +ri+ le+el   ++  ++l e k++++lLkE ++ ++
  CDO68952.1 444 SLQKQYqeqcAESERYRNQLRRRDQEIKDLQDAAQLQAIETQKWLREQSNYeERIAALESELILAQQAQAQLDEQKQENLLLKETIDRMR 533
                 8887775555778899999*****************9977776666666666********************************988776 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  16.8   9.6e-07    0.0017      76     180 ..     360     463 ..     348     485 .. 0.88
   2 ?   -4.1   6.3       1.9   3.3e+03     344     427 ..     454     540 ..     450     544 .. 0.66
   3 ?   -2.5   0.2      0.59   1.1e+03     282     330 ..     579     627 ..     570     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.6e-07
                 HTHHHHHT-GGGT--S-SHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHHH- CS
        EzrA  76 klpeieellfeaeelldkykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsygealeelekqlenie 174
                    e++ +l eae  l+  ++ + +++l++++ +l+e+++++ + + e kel+++e++n+++i +l+++  +l+k+l + r sy++ +++ ++q ++ e
  CDO68952.1 360 ANTELSRKLLEAERTLQ-NRLAEHEQELEDMQGRLEEARSELSATKREEKELRSKERQNSTQIAALETEIAKLQKSLDTARSSYQSLQKQYQEQCAESE 457
                 66789999****97775.6999************************************************************************99988 PP

                 ------ CS
        EzrA 175 kefsef 180
                 +  +++
  CDO68952.1 458 RYRNQL 463
                 876665 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.9
                 TTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 344 eklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslksl...rkdEkrAreqldeikkelkeik 427
                  + + + ++l +  +++++l+++ + + +   +   e+ + ee+++++e+++   +++ ++l   +++++  +e++d+++ ++ e++
  CDO68952.1 454 AESERYRNQLRRRDQEIKDLQDAAQLQAIETQKWLREQSNYEERIAALESELILAQQAQAQLdeqKQENLLLKETIDRMRFDMDELR 540
                 566777778888888888888888888888888888888888888888888765555444440004444456777777777777766 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTTGGG-T CS
        EzrA 282 tieeeidsLyddlekEveAkkeveknlkelkeklehlekqnkelkeeld 330
                 +++ee+d+  + +e Ev+A+++ +++ + +++ ++++++++    ++++
  CDO68952.1 579 DMDEEVDEDPHSFEVEVDAEDDDTESEDVVQTIITRTKRKVASRAKKIE 627
                 6777777777888888888888888888888888888877766665555 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.5     9e+02      53      66 ..      11      24 ..       3      28 .. 0.68
   2 !    6.0   4.0    0.0064        11      30      73 ..     349     396 ..     342     397 .. 0.77
   3 !   15.9   9.8   5.5e-06    0.0099      12      70 ..     419     477 ..     404     480 .. 0.87
   4 ?    0.4   0.5      0.38   6.8e+02      47      71 ..     489     513 ..     478     516 .. 0.74
   5 ?   -0.7   0.2      0.83   1.5e+03      27      50 ..     521     544 ..     508     548 .. 0.73
   6 ?   -1.7   0.0       1.6   2.9e+03      49      66 ..     612     629 ..     606     635 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.5
  TMF_DNA_bd 53 kkkleklekeleel 66
                 + +++le+e+++l
  CDO68952.1 11 RQSIADLEQEINNL 24
                56677777777776 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0064
  TMF_DNA_bd  30 klnntikkLrkknkele....keikelkkkleklekeleeleerlkea 73 
                 +  + ++ L+  n el     +  ++l+++l++ e+ele ++ rl+ea
  CDO68952.1 349 DMQERLDALQRANTELSrkllEAERTLQNRLAEHEQELEDMQGRLEEA 396
                 5567777888888888843334455667****************9987 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 5.5e-06
  TMF_DNA_bd  12 eqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerl 70 
                  qIa+L +E  kL+k+ +  + +  +L+k+ +e+  e +++ ++l++ ++e++ l++ +
  CDO68952.1 419 TQIAALETEIAKLQKSLDTARSSYQSLQKQYQEQCAESERYRNQLRRRDQEIKDLQDAA 477
                 58*****************************************************9865 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.38
  TMF_DNA_bd  47 keikelkkkleklekeleeleerlk 71 
                  e+++++++++ le+el   ++ ++
  CDO68952.1 489 REQSNYEERIAALESELILAQQAQA 513
                 5778888888888888887777665 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.83
  TMF_DNA_bd  27 kelklnntikkLrkknkelekeik 50 
                 ++l l++ti+++r ++ el ++ +
  CDO68952.1 521 ENLLLKETIDRMRFDMDELRNSAS 544
                 567778888888888888877765 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.6
  TMF_DNA_bd  49 ikelkkkleklekeleel 66 
                 i+++k+k+++  k++e+ 
  CDO68952.1 612 ITRTKRKVASRAKKIETF 629
                 788999***999999975 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.1    0.0014       2.5     188     330 ..     366     499 ..     334     516 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
       LMBR1 188 rslwreiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklksnenkteeslaklekqlikalqk 286
                 r+l    +++l+++l   + e++ ++ ++eea  el+ +++e k+lr++ +++++    le+ + k  +        +   + +s ++l+kq +++ ++
  CDO68952.1 366 RKLLE-AERTLQNRLAEHEQELEDMQGRLEEARSELSATKREEKELRSKERQNSTQIAALETEIAKLQK--------SLDTARSSYQSLQKQYQEQCAE 455
                 44444.788889999999999999999999999999999999999999998888544555554444444........4444578889999999999999 PP

       LMBR1 287 rertekqwkrllekalelediiknksskekefkssessrrgefa 330
                 +er ++q++r  +++ +l+d ++ ++ + +++ +++s++++++a
  CDO68952.1 456 SERYRNQLRRRDQEIKDLQDAAQLQAIETQKWLREQSNYEERIA 499
                 9*******999999999999999999999999988887666665 PP

>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  19.0    0.0012       2.2     133     296 ..     355     523 ..     333     529 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
  SpecificRecomb 133 eeeeeaaeklreellealevlsvqiaalglepelrrrlpeleeeespFlalqrelealleayeaaledeeeaeedlkhlrvlldqcreavdrvrk 227
                     ++ ++a ++l+++llea ++l  ++a  + e+el +++ +lee++s   a +re ++l+++ +++ ++ ++ e++ ++l+  ld+ r+  ++++k
      CDO68952.1 355 DALQRANTELSRKLLEAERTLQNRLA--EHEQELEDMQGRLEEARSELSATKREEKELRSKERQNSTQIAALETEIAKLQKSLDTARSSYQSLQK 447
                     5667889999***************9..999**************************************************************** PP

  SpecificRecomb 228 hleen.GvsvslvfllerlrqrleRleeLldlll......eeeeeeraralveLlkelveaeaekrsvrellreni 296
                     + +e+   s +   +l+r +q+++ l++ ++l +       +e+++ ++++++L +el+ a++++ ++ e  +en+
      CDO68952.1 448 QYQEQcAESERYRNQLRRRDQEIKDLQDAAQLQAietqkwLREQSNYEERIAALESELILAQQAQAQLDEQKQENL 523
                     *999956789999**********9999888887788888878899999******************9998877775 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  19.8   0.00021      0.38      52     160 ..     341     451 ..     330     457 .. 0.83
   2 ?    1.2  14.1      0.24   4.3e+02      42     115 ..     458     576 ..     452     653 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
        Fez1  52 eeikeleesleektlelevcenelqrkksea.ellrekvekleeelkelreelselsleeeeaalesdeak.aqrqeaeeleelkreverlraeLkeer 148
                 ++ ++++  ++e+ + l++ + el+rk  ea  +l++++ + e+el++++ +l+e+ +e + ++ e +e + ++rq+++++++l+ e+++l+++L + r
  CDO68952.1 341 AASSTVSLDMQERLDALQRANTELSRKLLEAeRTLQNRLAEHEQELEDMQGRLEEARSELSATKREEKELRsKERQNSTQIAALETEIAKLQKSLDTAR 439
                 5566677789999*************966651689999*************9999887776666665555515588899******************** PP

        Fez1 149 qkkeeqassFeq 160
                  + ++ ++++++
  CDO68952.1 440 SSYQSLQKQYQE 451
                 **9999999986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.24
        Fez1  42 elrakleekeeeikeleesleektle........................levcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.. 114
                   r++l+++++eik+l+++++ ++ e                         ++ +++l+++k+e+ ll+e+++++  ++ elr+++s l +   + +  
  CDO68952.1 458 RYRNQLRRRDQEIKDLQDAAQLQAIEtqkwlreqsnyeeriaaleselilAQQAQAQLDEQKQENLLLKETIDRMRFDMDELRNSASGLGQGGGSGTas 556
                 56899***************99999999999999999999999999999999999999999**********************9888766555444455 PP

        Fez1 115 ...................l 115
                                     
  CDO68952.1 557 ahgsvskslgaellskmkdG 576
                 55555555555444444440 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.1   1.3e+04     100     111 ..      13      24 ..      11      27 .. 0.50
   2 ?    9.1   1.0   0.00069       1.2      11      73 ..     343     401 ..     336     409 .. 0.82
   3 ?    4.9   4.6     0.014        26      28      82 ..     416     476 ..     408     511 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.1
  Baculo_PEP_C 100 svtNinstLnnl 111
                   s++ +++ +nnl
    CDO68952.1  13 SIADLEQEINNL 24 
                   445555555554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00069
  Baculo_PEP_C  11 ggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLt 73 
                   +++  ld+ + L+a++  n++++ +l ++  +++++L + +++l++    ++ rl+++ ++L+
    CDO68952.1 343 SSTVSLDMQERLDALQRANTELSRKLLEAERTLQNRLAEHEQELED----MQGRLEEARSELS 401
                   567789*****************9**999999*****999999988....5556665555554 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.014
  Baculo_PEP_C  28 qnvqilaqlatlldaietqLnalsedlksllaeldt......rldtlltnLtdalnalqdt 82 
                   qn++ +a+l+t +++++++L++  ++ +sl ++ ++      r  ++l + ++ ++ lqd+
    CDO68952.1 416 QNSTQIAALETEIAKLQKSLDTARSSYQSLQKQYQEqcaeseRYRNQLRRRDQEIKDLQDA 476
                   555555***********************99999996666664444444444555555543 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.46   8.3e+02      85     129 ..      11      56 ..       2      69 .. 0.69
   2 ?    7.8  10.6    0.0019       3.4      42     140 ..     371     476 ..     353     494 .. 0.73
   3 ?   -0.4   0.6      0.63   1.1e+03      50     100 ..     491     541 ..     468     561 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.46
                      HHHHHHHHHHHHHHHHHS-.....-EESEEES-SSHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  85 eeeveelekeideleaelp.....plksfilpggspaaaalhvaRtvcRr 129
                       +++++le+ei++l ++ p     + ++ ++    p  a ++v+Rt+ R 
       CDO68952.1  11 RQSIADLEQEINNLFEDHPlshlnESNEPVI----PGDALVDVLRTFSRN 56 
                      4569999**9999988777221112223333....346999999999986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0019
                      HHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.....-BTCCG-S--HHHHHHHHHHHHHHHHHS--EES...EEES-SSHHHHHHHHHHHHHH CS
  Cob_adeno_trans  42 arallaeeeeelkeaLeeiqneLfdlgaelatp....ekkkekkkiteeeveelekeideleaelpplks...filpggspaaaalhvaRtvcR 128
                      a  +l++  +e +++Le++q +L ++ +el+++    ++ ++k++ ++ ++++le+ei +l+++l++ +s    +  + ++ +a+ +  R   R
       CDO68952.1 371 AERTLQNRLAEHEQELEDMQGRLEEARSELSATkreeKELRSKERQNSTQIAALETEIAKLQKSLDTARSsyqSLQKQYQEQCAESERYRNQLR 464
                      333444447889999**************987767754444455555667****************9876331333445889999999999999 PP

                      HHHHHHHHHHHH CS
  Cob_adeno_trans 129 raERavvelaee 140
                      r   ++ +l+++
       CDO68952.1 465 RRDQEIKDLQDA 476
                      999998888664 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.63
                      THHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  50 eeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeidelea 100
                      +++++e+++ +++eL+ ++++ a  +++k+++ + +e+++++   +del++
       CDO68952.1 491 QSNYEERIAALESELILAQQAQAQLDEQKQENLLLKETIDRMRFDMDELRN 541
                      344555555555555555555443333333323333445555555555544 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.7     0.033        60     160     193 .]     342     375 ..     336     375 .. 0.83
   2 ?    5.3  36.0    0.0076        14       7     144 ..     380     516 ..     376     527 .. 0.93
   3 ?    0.4   1.1      0.25   4.5e+02      21      44 ..     509     532 ..     506     548 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.033
  Lebercilin 160 aekkktkeaqeevkalqeeierlkqklkeKereL 193
                 a++    ++qe+++alq+  ++l++kl e er L
  CDO68952.1 342 ASSTVSLDMQERLDALQRANTELSRKLLEAERTL 375
                 5556667899999999999999999999999976 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0076
  Lebercilin   7 sarllkikeLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklk 105
                  + +++++++q +l+e++s+l+++++E k L+   +  + ++  +e + a+L++ l+  ++  + l++++ +  ++ ++  ++l+++++e++ l+d+  
  CDO68952.1 380 AEHEQELEDMQGRLEEARSELSATKREEKELRSKERQNSTQIAALETEIAKLQKSLDTARSSYQSLQKQYQEQCAESERYRNQLRRRDQEIKDLQDAA- 477
                 567889999**************************************************************************************986. PP

  Lebercilin 106 klkkLsedknLaereeLqkkLeeleakleekeekikeLe 144
                 +l+++  +k L+e+++ ++++++le++l  +++   +L 
  CDO68952.1 478 QLQAIETQKWLREQSNYEERIAALESELILAQQAQAQLD 516
                 6**************************988887777665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.25
  Lebercilin  21 aelqskleelrkEnklLkrlqkrq 44 
                 +++q +l+e ++En lLk+   r 
  CDO68952.1 509 QQAQAQLDEQKQENLLLKETIDRM 532
                 68999************9977665 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2  13.5         2   3.5e+03       8      86 ..     364     442 ..     360     504 .. 0.86
   2 ?    5.3   0.1     0.018        33      10      75 ..     503     567 ..     497     594 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2
                 XXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXXGGGGGXEEEEECSTTTEEEEEETTS-SEEE CS
      FliD_N   8 lvkqlmkaerakldkleqkktklewkqsayrelnsklsnlksalsalsksstfsakkatssdesvvtatassgaaagsy 86 
                 l  +l++aer+ +++l + +++le  q  ++e +s+ls+ k + ++l++++  ++++ ++ ++++++ + s ++a +sy
  CDO68952.1 364 LSRKLLEAERTLQNRLAEHEQELEDMQGRLEEARSELSATKREEKELRSKERQNSTQIAALETEIAKLQKSLDTARSSY 442
                 67899******99****************************97778866555555566666666666665555555555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.018
                 XXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXXGGGGGXEEEEECSTTTEEE CS
      FliD_N  10 kqlmkaerakldkleqkktklewkqsayrelnsklsnlksalsalsksstfsakkatssdesvvta 75 
                 ++l+ a++a+  +l+++k+++   ++ +  ++ ++++l++++s l + +   + +a  s ++ + a
  CDO68952.1 503 SELILAQQAQ-AQLDEQKQENLLLKETIDRMRFDMDELRNSASGLGQGGGSGTASAHGSVSKSLGA 567
                 5666676665.8899999**********************99888543333333444443444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2173  (0.1212); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.43u 0.35s 00:00:01.77 Elapsed: 00:00:00.56
# Mc/sec: 5101.75
//
Query:       CDO68953.1  [L=269]
Description: hypothetical protein BN946_scf184782.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-53  180.6   0.1    3.8e-53  179.8   0.1    1.4  1  Proteasome      Proteasome subunit
    1.4e-13   50.2   0.1      3e-13   49.2   0.1    1.6  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   0.1   4.3e-57   3.8e-53       2     189 ..      29     222 ..      28     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 4.3e-57
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSS.........TSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHH CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstv.........eKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaak 91 
                 ++++ v+G ++kdgvvlaa+k++t   kll+ s +         eKif ++ +i+ ++aG +aDa+ l+++ar+ aq++ + y+++ipve l++r++++
  CDO68953.1  29 SHAGIVIGARSKDGVVLAAEKKVT--GKLLDMSGAkgqsyggsgEKIFLLNSNIIGGVAGITADANSLINYARQAAQRHLFMYNEDIPVELLAQRLCDL 125
                 68999*******************..7777776444455555669****************************************************** PP

                 HHHHHHHCTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome  92 lqaytqrsgrrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 +q+ytq++g rpfgvsll+ag+d +   +Ly+ dpsG+y ++k a++iG +   a+++l++ yked+++ +a+el++k+++++++  +l+++++e+a+
  CDO68953.1 126 KQGYTQYGGLRPFGVSLLYAGYDPHYHFQLYHSDPSGNYSGWK-ATCIGANNGTATSLLKQDYKEDISVADAIELVLKVMSKTMDSTTLGSEKLEFAT 222
                 ******************************************8.*****99999****************************************9987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.1   3.4e-17     3e-13       1      23 []       5      27 ..       5      27 .. 0.99

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 3.4e-17
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+ +t+FSP+GRL+Q+EYAm+A
      CDO68953.1  5 YDSRTTIFSPEGRLYQIEYAMEA 27
                    9*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1995.67
//
Query:       CDO68954.1  [L=127]
Description: hypothetical protein BN946_scf184782.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-11   42.6   1.4    2.9e-11   42.6   1.4    3.3  3  CHZ              Histone chaperone domain CHZ
  ------ inclusion threshold ------
      0.094   10.8  26.0       0.11   10.6  26.0    1.0  1  DNA_pol_phi      DNA polymerase phi
       0.58   10.0  11.4       0.73    9.7  11.4    1.2  1  VID27_N          VID27 N-terminal region
        0.7    8.0  17.0       0.78    7.9  17.0    1.1  1  Nop14            Nop14-like family
        2.1    6.4   6.0        1.9    6.5   6.0    1.2  1  Sporozoite_P67   Sporozoite P67 surface antigen
        2.4    7.4  17.2        2.6    7.3  17.2    1.0  1  BUD22            BUD22
          5    5.5   6.3        4.4    5.7   6.3    1.3  1  Cytomega_UL84    Cytomegalovirus UL84 protein
          5    4.8   7.4        5.1    4.8   7.4    1.0  1  PI3K_1B_p101     Phosphoinositide 3-kinase gamma adapter prot
        7.5    6.2  17.4       0.14   11.8   9.5    1.9  2  FAM176           FAM176 family


Domain annotation for each model (and alignments):
>> CHZ  Histone chaperone domain CHZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9  12.0         9   1.8e+04       1       8 [.      58      65 ..      44      65 .. 0.94
   2 !   42.6   1.4   1.5e-14   2.9e-11       1      33 [.      64      97 ..      64      98 .. 0.95
   3 ?   -3.9   0.1       5.1     1e+04       2       6 ..     121     125 ..     121     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 9
         CHZ  1 eeedeLeE 8 
                e+ed++eE
  CDO68954.1 58 EDEDDMEE 65
                89999998 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 1.5e-14
         CHZ  1 eeedeLeEIDtsNII.sgGRRTRgktiDfakaae 33
                ee+d+L E+D+s II ++GRRTRg ++D+++a++
  CDO68954.1 64 EEDDDLSELDPSLIInTSGRRTRGVRVDYSSAEA 97
                8**************7789*************97 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5.1
         CHZ   2 eedeL 6  
                 ++d++
  CDO68954.1 121 RDDDM 125
                 58998 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  26.0   5.4e-05      0.11     625     716 ..      13     126 ..      10     127 .] 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.4e-05
  DNA_pol_phi 625 Learenkegqaelfedededeeddeeeeeeddeededseedddeeesdedeededdedvdeid...............elreklaealgesg...ede 704
                  L + + +e++ +  +de  + + +  +++  d+e+ed+eed++e+e++++++ e+d+d  e d               + + + aeal + g   ed+
   CDO68954.1  13 LRTANPPESFTA--ADEGTKGKGKLVQDDVMDNEEEDEEEDEEEDEEEDEDDMEEDDDLSELDpsliintsgrrtrgvRVDYSSAEALAKAGlkpEDA 108
                  555656666666..455666666666666666666666666666667777777777777777777899999999999988888888888888887666 PP

  DNA_pol_phi 705 ddddsdsD......edmd 716
                  ++dd+ ++      +dm 
   CDO68954.1 109 AEDDENEEsfvardDDMQ 126
                  666666664555533355 PP

>> VID27_N  VID27 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  11.4   0.00037      0.73      68     133 ..      44     121 ..      34     127 .] 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00037
     VID27_N  68 yeegeeelleeeeeeddeakkekdekvflldeeLkfrveeked.gekv............laWrdlsgdegdlyeFvvd 133
                  ee+eee +ee+eeed e+  e+d+    ld +L ++++ + + g +v            l  +d  +d++++  Fv++
  CDO68954.1  44 EEEDEEEDEEEDEEED-EDDMEEDDDLSELDPSLIINTSGRRTrGVRVdyssaealakagLKPEDAAEDDENEESFVAR 121
                 3445544444444444.468899999**********9988854477778999999999999999999999999999986 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  17.0   0.00039      0.78     352     419 ..      25     107 ..       4     127 .] 0.50

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00039
       Nop14 352 eddfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdlese...............eeeeedeleeelleeek 419
                  d+ ++ + +  +++  ++eee+e+e+eeedeee+e++ e++ddls+l+ +               + ++ + l +  l+ e+
  CDO68954.1  25 ADEGTKGKGKLVQDDVMDNEEEDEEEDEEEDEEEDEDDMEEDDDLSELDPSliintsgrrtrgvrvDYSSAEALAKAGLKPED 107
                 33433333333333333344444444444444444555566677777776677766666666666533333333332222222 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.0   0.00095       1.9     100     129 ..      37      69 ..       4     118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00095
  Sporozoite_P67 100 qsdteinedd...kGskedseedddeeeeednk 129
                     q+d+  ne++   + ++ed+eed+d+ ee+d+ 
      CDO68954.1  37 QDDVMDNEEEdeeEDEEEDEEEDEDDMEEDDDL 69 
                     444433333200023344444444445555554 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  17.2    0.0013       2.6     167     231 ..      37     116 ..       8     127 .] 0.41

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
       BUD22 167 eesdkeeesedsedeekeeseddeeeeeededdedaee............deedeeaeerelaqydglla.........sddeded 231
                 +++ +++e+ed+e+    ++e+deee+e+d++++d  +            +++ +   + ++++ ++l++         +dde+e+
  CDO68954.1  37 QDDVMDNEEEDEEE----DEEEDEEEDEDDMEEDD--DlseldpsliintSGRRTRGVRVDYSSAEALAKaglkpedaaEDDENEE 116
                 11222222222222....12222222222222222..1334778899988444555555566666664445665533322222222 PP

>> Cytomega_UL84  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3    0.0022       4.4     156     183 ..      41      68 ..      13     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0022
  Cytomega_UL84 156 ashepekkkekeekkeeededdrnddre 183
                       e e   e ee  eeededd ++d +
     CDO68954.1  41 MDNEEEDEEEDEEEDEEEDEDDMEEDDD 68 
                    5568888899999999999999987765 PP

>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.4    0.0026       5.1     308     342 ..      43      75 ..      31     127 .] 0.42

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0026
  PI3K_1B_p101 308 aspeeledeeeedeedvdeeedleeeeeeeeedsl 342
                   +  ee+ +ee+e+e++ ++e+d+ee+++ +e d +
    CDO68954.1  43 N--EEEDEEEDEEEDEEEDEDDMEEDDDLSELDPS 75 
                   1..11111122222223445555555554444332 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.5   7.1e-05      0.14      63     113 ..      43     101 ..      22     103 .. 0.52
   2 ?    0.4   1.2      0.23   4.6e+02      69      80 ..     106     117 ..      85     127 .] 0.46

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.1e-05
      FAM176  63 eesekasededeeeeeeeedsseseaeeel..........sefertlsvnv.ftsaeelerA 113
                 +e+e+++ede+e+eee+e+d +e++    l          ++ +rt  v v ++sae+l +A
  CDO68954.1  43 NEEEDEEEDEEEDEEEDEDDMEEDDD---LseldpsliinTSGRRTRGVRVdYSSAEALAKA 101
                 11122233333333333333333333...234477778875556666444449999999887 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
      FAM176  69 sededeeeeeee 80 
                 ++  +++e+ee+
  CDO68954.1 106 EDAAEDDENEES 117
                 222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1329  (0.0741257); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 837.56
//
Query:       CDO68955.1  [L=514]
Description: hypothetical protein BN946_scf184782.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        3.2    7.5   4.7        1.6    8.5   0.2    2.5  2  3-PAP          Myotubularin-associated protein


Domain annotation for each model (and alignments):
>> 3-PAP  Myotubularin-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   8.8e-05       1.6      27      67 ..       8      47 ..       2      61 .. 0.89
   2 ?   -0.1   0.4     0.041   7.4e+02       7      41 ..     106     149 ..     100     164 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 8.8e-05
       3-PAP 27 eallrrnslllrlksdlllaessdsndseqffrewlskpad 67
                +a+ r +sl+l+l++++++++s ++++  q +++ +s+pa 
  CDO68955.1  8 DADHRSSSLVLNLSREFPPHPSRSQTP-HQHIQDTRSCPAA 47
                678899************999999999.99*******9985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.041
       3-PAP   7 ysstlrgspp.........slknglfrdeeallrrnslllrlks 41 
                 +ss++++ ++         +++ +  r++ ++ ++  l+l+l+ 
  CDO68955.1 106 LSSPSASASSspssasaarEMRSSRPREQSSKQSKALLVLKLSG 149
                 44444444444467777777888888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3688.55
//
Query:       CDO68956.1  [L=252]
Description: hypothetical protein BN946_scf184782.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-09   36.1   0.0    4.3e-08   33.8   0.0    2.2  1  AAA_18           AAA domain
    2.5e-08   34.2   0.0    0.00017   21.7   0.0    2.8  3  AAA_33           AAA domain
    1.4e-05   25.2   0.0    0.00041   20.5   0.0    2.2  2  SKI              Shikimate kinase
     0.0001   22.8   0.0    0.00018   21.9   0.0    1.4  1  AAA_16           AAA ATPase domain
    0.00059   19.6   0.0    0.00097   18.9   0.0    1.2  1  AAA_30           AAA domain
     0.0015   18.4   0.0     0.0028   17.6   0.0    1.4  1  NACHT            NACHT domain
     0.0017   18.7   0.0     0.0054   17.0   0.0    1.9  1  AAA_22           AAA domain
     0.0031   17.3   0.0      0.005   16.6   0.0    1.2  1  Cytidylate_kin   Cytidylate kinase
     0.0033   17.7   0.0      0.006   16.8   0.0    1.5  1  AAA_28           AAA domain
     0.0037   17.1   0.0       0.41   10.5   0.0    2.2  2  dNK              Deoxynucleoside kinase
     0.0094   15.9   0.0      0.016   15.1   0.0    1.3  1  APS_kinase       Adenylylsulphate kinase
  ------ inclusion threshold ------
       0.01   16.2   0.0      0.028   14.8   0.0    1.7  2  AAA_17           AAA domain
      0.016   15.2   0.0      0.034   14.1   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
      0.039   13.2   0.0      0.052   12.8   0.0    1.1  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.049   13.4   0.0      0.072   12.8   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.052   13.2   0.0        1.5    8.4   0.0    2.2  2  Thymidylate_kin  Thymidylate kinase
      0.059   13.8   0.0       0.11   12.9   0.0    1.4  1  AAA              ATPase family associated with various cellul
      0.092   11.4   0.0       0.12   11.0   0.0    1.1  1  PEPCK_ATP        Phosphoenolpyruvate carboxykinase
       0.12   12.3   0.0       0.22   11.6   0.0    1.3  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.21   10.7   0.0       0.31   10.2   0.0    1.2  1  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.8e-11   4.3e-08       2     122 ..      52     206 ..      52     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.8e-11
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...................................gvnlrdvakenglllevdpe.......aldeskrldedkld 58 
                 ++ G++G+GKttla+eL++rl +                                    +   ++a+e +      ++       al  +  l++ ++d
  CDO68956.1  52 IIQGVAGTGKTTLARELERRLDMpyvegdelhpkanidkmsagipltdadrepwlqliRTTAEHMAAEQQ-----ADPsfarrpgALITCSALKKYYRD 145
                 689*****************99998999999999999999998888888888855555444444443333.....333344346688888888888888 PP

      AAA_18  59 klldaleenssaleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeeakike 122
                  l  + + +++  e g++  + ghl+ +e++ +  +  v+++ + e l+eR++kR  +  k+ e
  CDO68956.1 146 ILRGTYNPARD-PERGDSPRLPGHLEPPEPHTLPAYF-VFIKGDRELLKERISKRQGHYMKP-E 206
                 88888888776.88888889**************999.*****************9887776.4 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.5   1.4e+03     101     125 ..      24      48 ..       2      51 .. 0.73
   2 !   21.7   0.0   1.9e-07   0.00017       3      66 ..      52     116 ..      50     127 .. 0.69
   3 !    9.1   0.0    0.0016       1.4      96     142 ..     176     217 ..     170     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.5
      AAA_33 101 ivvvetdeetlkeRlakRaangddr 125
                 i+++   ++t  +Rla+Ra++  +r
  CDO68956.1  24 ILIIVMVRFTVLARLAARAHHPASR 48 
                 5666666789999999999986655 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.9e-07
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvl.drlyqilnelarka 66 
                 ++ G++G+GK+tla++l ++l++  ++ d+l+ +   ++      +t++  + + q ++ +a+ +
  CDO68956.1  52 IIQGVAGTGKTTLARELERRLDMPYVEGDELHPKANIDKMSAGIPLTDADrEPWLQLIRTTAEHM 116
                 778***************************99887775544444444322133444444444433 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0016
      AAA_33  96 gvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqkarfer 142
                   p   v+++ d+e+lkeR+ kR+ +      ++ e ld q+a++e 
  CDO68956.1 176 TLPAYFVFIKGDRELLKERISKRQGHY-----MKPEMLDSQLATLES 217
                 5677889******************95.....566777777777765 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.6e-07   0.00041       2      60 ..      58     114 ..      57     119 .. 0.90
   2 ?    2.5   0.0      0.16   1.5e+02      87     108 ..     180     204 ..     174     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.6e-07
                 TSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCC CS
         SKI   2 GaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelle 60 
                 G+GK+t++++l ++l++++++ Del+ k++  +++  +     +++re + ++++  +e
  CDO68956.1  58 GTGKTTLARELERRLDMPYVEGDELHPKANIDKMSAGIPLT--DADREPWLQLIRTTAE 114
                 9***************************9999999998866..9999999999988765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
                 EEEEEE--HHHHHHHHHHTTS...S CS
         SKI  87 iviyLdvsleellerlkadke...R 108
                 ++++++ ++e l er+++++    +
  CDO68956.1 180 YFVFIKGDRELLKERISKRQGhymK 204
                 689*************999982222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     2e-07   0.00018      15      88 ..      38     119 ..      31     179 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2e-07
      AAA_16  15 alervrsgrp.elvllsGesGvGKsslvrellralekdggif......lrgkcdqlesaipy.....salaqalareellrqllde 88 
                 +  r++ + +  l ++ G +G+GK++l+rel r+l     ++       +++ d+ +++ip+      +++q++ r +  + +++e
  CDO68956.1  38 LAARAHHPASrTLSIIQGVAGTGKTTLARELERRLDMP--YVegdelhPKANIDKMSAGIPLtdadrEPWLQLI-R-TTAEHMAAE 119
                 3334444444567789*****************99977..2222222233333333555777666655577777.4.444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-06   0.00097      10      40 ..      40      70 ..      37      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
      AAA_30 10 vealltsgdrvavltGpAGtGKttalkalre 40
                ++a +  ++ +++++G+AGtGKtt+ ++l++
  CDO68956.1 40 ARAHHPASRTLSIIQGVAGTGKTTLARELER 70
                5555556778***************999854 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.1e-06    0.0028       2      31 ..      50      79 ..      49      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-06
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpq 31
                l+i+qG aG GKTtL+++l + +  ++ ++
  CDO68956.1 50 LSIIQGVAGTGKTTLARELERRLDMPYVEG 79
                689***************998887777666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     6e-06    0.0054       5      30 ..      48      73 ..      43     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqld 30
                +++ ++ G +GtGKTtl+r+l ++ld
  CDO68956.1 48 RTLSIIQGVAGTGKTTLARELERRLD 73
                6788999****************995 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.6e-06     0.005       3      64 ..      53     116 ..      52     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.6e-06
                     EE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HH..HHHHHHHT--EEE CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldea..alvelakevelsf 64 
                     i G ag+GK ++ar+l ++l++ y++  +l        + + ++l+d +   +++l+++++ ++
      CDO68956.1  53 IQGVAGTGKTTLARELERRLDMPYVEGDELHPKANIDKMSAGIPLTDADrePWLQLIRTTAEHM 116
                     7899****************************99999999999998765226888888876555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.7e-06     0.006       4      56 ..      53     107 ..      51     145 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.7e-06
      AAA_28   4 itGgestGKTtlleaLaar.gypvv..pEaareileeklakgedalpwvedllafa 56 
                 i G  +tGKTtl+++L++r ++p+v   E + +   +k+  g    ++ ++  +++
  CDO68956.1  53 IQGVAGTGKTTLARELERRlDMPYVegDELHPKANIDKMSAGIPLTDA-DREPWLQ 107
                 77899*************999999988888877777777666653333.2333333 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00045      0.41       3      28 ..      53      78 ..      51     148 .. 0.82
   2 ?    4.8   0.0     0.024        22     123     149 ..     178     204 ..     169     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
                EEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK  3 veGnIgaGKstlvklLskklgvkvfe 28
                ++G  g GK+tl+  L+++l+++ +e
  CDO68956.1 53 IQGVAGTGKTTLARELERRLDMPYVE 78
                89******************988775 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.024
                 -SEEEEEE--HHHHHHHHHHCTTCCCT CS
         dNK 123 pdlliYLkasletclerikkRgreeek 149
                 p  ++++k + e ++eri kR+ ++ k
  CDO68956.1 178 PAYFVFIKGDRELLKERISKRQGHYMK 204
                 6789*****************877655 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-05     0.016       7      72 ..      53     118 ..      48     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
                 EESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHH CS
  APS_kinase   7 ltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevakllad 72 
                 + G++g+GK+t+a++le++L    ++   L       +++ +++ +++dR+  ++ +   a+++a 
  CDO68956.1  53 IQGVAGTGKTTLARELERRLDMPYVEGDELHPKANIDKMSAGIPLTDADREPWLQLIRTTAEHMAA 118
                 789*******************9999999999988899*************999999999999986 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.1e-05     0.028       2      65 ..      55     116 ..      54     129 .. 0.70
   2 ?   -2.0   0.0       4.9   4.4e+03     106     124 ..     182     200 ..     176     238 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-05
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllreeakrgglakardemrklpleekkelqkeaaeki 65 
                 G+ G GK+t++++l ++++ ++++ Gd l   a+ +++ +a   + +++ e+  +l ++ ae++
  CDO68956.1  55 GVAGTGKTTLARELERRLDMPYVE-GDELHPKANIDKM-SAGIPLTDADREPWLQLIRTTAEHM 116
                 999*********************.**99876665555.2333344455555555555555554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
                 EEEE--HHHHHHHHHHHTT CS
      AAA_17 106 illeadpeeilerrlkdrt 124
                 ++++ d e + er  k+++
  CDO68956.1 182 VFIKGDRELLKERISKRQG 200
                 5555555544444444443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.8e-05     0.034       3      28 ..      52      77 ..      51      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.8e-05
                EEE--SSSSHHHHHHHGGGGBS--EE CS
       AAA_5  3 lLvGppGtgKselaerlaaalnreve 28
                +++G  GtgK++la++l ++l  +++
  CDO68956.1 52 IIQGVAGTGKTTLARELERRLDMPYV 77
                789*****************976654 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.8e-05     0.052       2      25 ..      49      72 ..      48      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.8e-05
     DUF2075  2 avvlVtGvaGtGKtvvllnllael 25
                ++ +++GvaGtGKt ++ +l  +l
  CDO68956.1 49 TLSIIQGVAGTGKTTLARELERRL 72
                5779************99987777 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     8e-05     0.072       2      21 ..      52      71 ..      51      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8e-05
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     +++Gv+G GK+tl r+l r 
       CDO68956.1 52 IIQGVAGTGKTTLARELERR 71
                     89***********9998665 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0017       1.5       1      21 [.      53      73 ..      53      77 .. 0.92
   2 ?    2.7   0.0       0.1        90     117     146 ..     177     206 ..     168     238 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
                     EEESTTSSHHHHHHHHHHHHH CS
  Thymidylate_kin  1 iEGlDGaGKttqaellkerlk 21
                     i G+ G+GKtt a+ l +rl+
       CDO68956.1 53 IQGVAGTGKTTLARELERRLD 73
                     679**************9985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                      E-SEEEEEESSHHHHHTSCCTTSSTTTSHH CS
  Thymidylate_kin 117 kPdltflldvdpevalkRlakrdeldeeee 146
                       P ++++++ d e   +R++kr+  + + e
       CDO68956.1 177 LPAYFVFIKGDRELLKERISKRQGHYMKPE 206
                      79********************98554443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012      0.11       3      28 ..      53      78 ..      51      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                EESSTTSSHHHHHHHHHHHHTHEEEE CS
         AAA  3 lyGppGtGKTllakavakelgvefle 28
                + G  GtGKT+la+ + + l+++++e
  CDO68956.1 53 IQGVAGTGKTTLARELERRLDMPYVE 78
                6799************9999988876 PP

>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.12     210     234 ..      48      72 ..      25      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                 S-EEEEEE-TTSSHHHHH-BTTB-E CS
   PEPCK_ATP 210 gdvalfFGLSGtGKTtLsadperkl 234
                    ++  G +GtGKTtL+ + er+l
  CDO68956.1  48 RTLSIIQGVAGTGKTTLARELERRL 72 
                 4678999************999987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.22      18      45 ..      46      74 ..      32      79 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                H.TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 18 l.gdvilLeGdLGaGKTtlvrglakalgv 45
                + +++ +++G  G+GKTtl+r+l + l++
  CDO68956.1 46 AsRTLSIIQGVAGTGKTTLARELERRLDM 74
                24566899***************999876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00035      0.31      24      43 ..      52      71 ..      34      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
                EEEESTTSSHHHHHHHHCCS CS
      NB-ARC 24 alvGmgGvGKttlakqilnk 43
                 + G +G GKttla++  + 
  CDO68956.1 52 IIQGVAGTGKTTLARELERR 71
                579***********998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1776.89
//
Query:       CDO68957.1  [L=368]
Description: hypothetical protein BN946_scf184782.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.4   9.2    1.1e-10   41.4   9.2    2.3  2  bZIP_2      Basic region leucine zipper
    1.9e-10   40.7  13.0    2.3e-10   40.4   6.4    2.3  2  bZIP_1      bZIP transcription factor
  ------ inclusion threshold ------
      0.082   11.8   0.0      0.099   11.5   0.0    1.1  1  Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
       0.11   12.8   1.0       0.25   11.7   0.1    1.9  2  TSC22       TSC-22/dip/bun family
       0.13   12.0   4.3        0.2   11.5   4.3    1.1  1  DUF724      Protein of unknown function (DUF724)
       0.24   11.1   0.1        0.4   10.3   0.1    1.3  1  DDE_Tnp_4   DDE superfamily endonuclease
       0.48   11.0  14.6       0.19   12.3  10.9    2.0  2  bZIP_Maf    bZIP Maf transcription factor
        9.7    6.2  15.8       0.38   10.8   7.7    2.0  2  DUF5384     Family of unknown function (DUF5384)


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.2   4.9e-14   1.1e-10       2      46 ..      41      86 ..      40      89 .. 0.95
   2 ?    4.4   3.1     0.018        39      30      53 ..     102     127 ..      98     131 .. 0.68

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 4.9e-14
                XXXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  2 ddeyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrq 46
                ++e+re R  +Nr+Aa++sR+++ka  ++le+rv eLeeeN qLr+
  CDO68957.1 41 PEERREARAhRNRIAAQNSRDRRKAQFAYLERRVAELEEENRQLRA 86
                6899999*************************************97 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHH..HHHHHHHHHHHHHH CS
      bZIP_2  30 leervkeLee..eNaqLrqkveqLek 53 
                  eer keL +  eN++Lr +v++Le+
  CDO68957.1 102 DEERRKELARemENEELRHRVKTLEA 127
                 46666666542268889999888875 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   6.4     1e-13   2.3e-10       3      47 ..      42      86 ..      40      90 .. 0.94
   2 ?    4.1   0.5     0.023        51      24      40 ..     111     127 ..     102     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1e-13
                XXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  3 elKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLks 47
                e +re r+ +NR+aA+ sR R++a+ + Lerrv++Le+eN +L+ 
  CDO68957.1 42 EERREARAHRNRIAAQNSRDRRKAQFAYLERRVAELEEENRQLRA 86
                569****************************************85 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHHHHH CS
      bZIP_1  24 KqaeieeLerrvkaLek 40 
                 +++e eeL  rvk+Le+
  CDO68957.1 111 REMENEELRHRVKTLEA 127
                 56777788888888876 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.4e-05     0.099     165     243 ..      59     139 ..      45     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
  Fmp27_WPPW 165 endpervqkelleeRleeleeqiekleekleelelksekedeelkeeieelekei..kelkeklefletlledlkeseess 243
                 + d ++ q  +le+R++elee+ ++l+  ++    ++  ++++ +e+ +el +e+  +el++++++le+  e + +  ++s
  CDO68957.1  59 SRDRRKAQFAYLERRVAELEEENRQLRAGMGLTAPNQPPQEQKDEERRKELAREMenEELRHRVKTLEAGWEAVMKALAAS 139
                 467899**********************99988888877766666666666655411789999999999888877766544 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011      0.25      20      43 ..      64      87 ..      54     101 .. 0.84
   2 ?   -1.2   0.1       1.2   2.6e+03      16      26 ..     115     125 ..     105     131 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
       TSC22 20 kekIkeLeernseleeENslLkal 43
                k + + Le r++eleeEN++L+a 
  CDO68957.1 64 KAQFAYLERRVAELEEENRQLRAG 87
                677888****************85 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
       TSC22  16 VevLkekIkeL 26 
                  e+L+ ++k L
  CDO68957.1 115 NEELRHRVKTL 125
                 34455555444 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.3   8.8e-05       0.2     108     185 ..      43     133 ..      34     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.8e-05
      DUF724 108 leerkklekkieeeesekrkleeeidelekkilelerqlallk.............ekkeaadkeiarlkseaekleeeledveqeFeava 185
                 ++++ +++++   +++++ + +++++ le++++ele+++ +l+             e+k+++ ++  + + e+e+l+++++  e   eav+
  CDO68957.1  43 ERREARAHRNRIAAQNSRDRRKAQFAYLERRVAELEEENRQLRagmgltapnqppqEQKDEERRKELAREMENEELRHRVKTLEAGWEAVM 133
                 455566677777788888889**********************************988888777777788888999998888887777765 PP

>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00018       0.4      91     139 ..      28      75 ..       4      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
   DDE_Tnp_4  91 lvpykkkkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlr 139
                 + p +k+ +++l++ee+++ ra+  +ri +++   r k +f +l++r+ 
  CDO68957.1  28 SGPPRKRARSELTPEERREARAHR-NRIAAQNSRDRRKAQFAYLERRVA 75 
                 44666699*************998.9******************87765 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  10.9   8.3e-05      0.19      31      75 ..      45      89 ..      32     106 .. 0.81
   2 ?   -0.3   0.6      0.71   1.6e+03      56      76 ..     102     124 ..      95     138 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
    bZIP_Maf 31 qrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqels 75
                +  R  +Nr +a+++r+rr  q   le+  +eleee+++l++ + 
  CDO68957.1 45 REARAHRNRIAAQNSRDRRKAQFAYLERRVAELEEENRQLRAGMG 89
                3446788********************************987655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.71
    bZIP_Maf  56 lekekeeleeeler..lqqelsr 76 
                 +e+ ++el++e+e+  l+++++ 
  CDO68957.1 102 DEERRKELAREMENeeLRHRVKT 124
                 44444444444332013333333 PP

>> DUF5384  Family of unknown function (DUF5384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.7   0.00017      0.38      21      73 ..      32      84 ..      22      87 .. 0.93
   2 ?    0.1   1.1      0.33   7.5e+02       5      28 ..      99     122 ..      93     139 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
     DUF5384 21 eekqraeaaeaaakrkRaaaaaaaaearkekakaeaaedkkRdqsyEDelRaL 73
                ++++r e   ++++++Ra+ ++ aa++ ++++ka+ a   +R  + E+e+R+L
  CDO68957.1 32 RKRARSELTPEERREARAHRNRIAAQNSRDRRKAQFAYLERRVAELEEENRQL 84
                578899999999****************************************9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.33
     DUF5384   5 krkeaerqaerereleeekqraea 28 
                 ++k++er+ e  re+e+e+ r++ 
  CDO68957.1  99 EQKDEERRKELAREMENEELRHRV 122
                 345555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1089  (0.0607396); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2600.08
//
Query:       CDO68958.1  [L=83]
Description: hypothetical protein BN946_scf184782.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 612.39
//
Query:       CDO68959.1  [L=579]
Description: hypothetical protein BN946_scf184782.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   14.6   0.1      0.022   14.6   0.1    2.1  2  AAA_lid_2  AAA lid domain


Domain annotation for each model (and alignments):
>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4      0.55   9.8e+03       3      30 ..     351     378 ..     350     384 .. 0.60
   2 ?   14.6   0.1   1.2e-06     0.022      38      63 ..     496     522 ..     481     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.55
   AAA_lid_2   3 trahlaielgvsgrRadlallraArAlA 30 
                 tr+h+a+   + + Ra   +   ArA+ 
  CDO68959.1 351 TRHHPALDGTLLTQRAHADAEALARAFR 378
                 6666666666666666666666666654 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-06
   AAA_lid_2  38 VtpeDvkeaaplVLaHRlr.repeaeg 63 
                 V++eDv +++p V +HRlr r+ ++++
  CDO68959.1 496 VSEEDVARIFPRVVSHRLRvRNGPDDE 522
                 99*****************97666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4139.05
//
Query:       CDO68960.1  [L=853]
Description: hypothetical protein BN946_scf184782.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.18   11.2   0.0    1.4  1  Rax2      Cortical protein marker for cell polarity
       0.63    9.5   2.8        1.4    8.4   2.8    1.6  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     2e-05      0.18     158     210 ..     278     332 ..     170     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2e-05
        Rax2 158 kklsrgfV..VlIgLAlALgtvallgllgiilayirkkregyepakprideneml 210
                  +ls+g++    IgL lA++  ++ +l++i   ++r +r+  + ++pri++ + l
  CDO68960.1 278 PELSKGAIaaLAIGLTLAVAAGLVAVLFFIRRRRLRARRKREMLVNPRINRRSRL 332
                 556666653357999999999999999************************9876 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.8   0.00016       1.4      21      38 .]     294     311 ..     282     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00016
        SKG6  21 aViiivLlailifvrRRk 38 
                  ++++ L+a+l+f+rRR+
  CDO68960.1 294 LAVAAGLVAVLFFIRRRR 311
                 479**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 5815.48
//
Query:       CDO68961.1  [L=415]
Description: hypothetical protein BN946_scf184782.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-20   73.9   0.0    1.4e-20   73.4   0.0    1.1  1  BRO1      BRO1-like domain


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   8.1e-25   1.4e-20      88     348 ..      12     359 ..       2     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 8.1e-25
                 XXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...................XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
        BRO1  88 kveFtWydaf.....ssskkvtqsslafEkasvLFniaalysqlaasqnr.................stdeglkrackyfqqAAgvfqylkenflhapt 164
                  + F+W +++      +s++++  ++a E + +L  +a   s la +  +                 ++de l  a++++++AAgv++y+ +++l + +
  CDO68961.1  12 VLVFSWRTTLtsgifHNSPRISVPTFASETVFTLLTYAFSISNLARAVVHslgryesergisdterkAKDERLTFAVTLLSKAAGVYEYVGKECLAEWE 110
                 47799999999999966899999999999999999999999999977555568899999999999999************************9999987 PP

                 ...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXXXXXXXXXX........... CS
        BRO1 165 e............eesedlspetlkaLeklmlAqAqecflekaik................dnkkdsliaKlaaqvaelYeealealkkselide.... 231
                 +            ++++dls+e++  L+k+ lA Aq++ ++k ++                ++ +++l+aKl  ++a+lY++a +++k+  ++++    
  CDO68961.1 111 RersrvvsvgmscPRPPDLSREVVIGLSKMALADAQNLAIRKLLSkaafestvspgpplpkSHPSPALVAKLHLECASLYSSARSLVKTPGASKSsskh 209
                 699**********8899**************************765788777777777775577777********************999888889*** PP

                 ................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.............X....... CS
        BRO1 232 ................keevlkklldksWikhvqvKashfkAlaqyrqalaaeeak...kyGeeiarlqkAlellkea.............lkskkaee 298
                                   e++ +    +   +++   ++++Ala+ + +++a e+    + G ++++l  A+++l+e                   ++e
  CDO68961.1 210 rmklsfgkdrshqdtgP-EETGEEAAPELRRYLADEIALHNALAHKWLGVDAGEHGgtsEGGVAVGFLAWAKKELEELrggsssggvmdneR----EKE 303
                 ************99742.333344788***********************88765434499*****************99999999965432....344 PP

                 ........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX CS
        BRO1 299 l....ledlkglkdvveeklkeaekDNdlIYheevPsesslpeikkas..lvkaip 348
                 +    +  +++  ++ ++ l  +++ Nd+   ++vP++++l+++ +a   +v++ p
  CDO68961.1 304 MrerrRARVQDELESTNTFLVGYKRMNDTMSFQPVPPQAELQAMIPAGllAVNVKP 359
                 4555688999999999999999********************86666521455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2984.93
//
Query:       CDO68962.1  [L=792]
Description: hypothetical protein BN946_scf184782.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.6e-120  399.4   0.0   1.4e-119  398.8   0.0    1.3  1  RIBIOP_C   40S ribosome biogenesis protein Tsr1 and BMS1 C-te
      6e-18   64.7   0.0    4.5e-17   61.9   0.0    2.4  1  AARP2CN    AARP2CN (NUC121) domain
  ------ inclusion threshold ------
      0.064   13.1   0.0       0.16   11.9   0.0    1.7  1  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  398.8   0.0  2.4e-123  1.4e-119       1     292 []     480     767 ..     480     767 .. 0.97

  Alignments for each domain:
  == domain 1  score: 398.8 bits;  conditional E-value: 2.4e-123
    RIBIOP_C   1 vetpedvearerfakyrglkslrtsewdpkenlpeeyarifefenfketkkrvlkealeeregvegGtyvrleiknvpeelveeknfdekkplivfgll 99 
                 ++tp dv+ar+rf++yrgl+s+rts+wdp+enlp++yarif+fe+fk+t+++v ++a+e ++g+e+Gt+v+++ik+vp+e ++     + +p++vf+ll
  CDO68962.1 480 IDTPLDVPARTRFQRYRGLRSFRTSPWDPYENLPRDYARIFQFEDFKRTERAVKRRAEE-EGGIEPGTRVTVYIKDVPKEAAQ---VVPGRPFVVFSLL 574
                 699************************************************99998888.8*****************99999...4599********* PP

    RIBIOP_C 100 phEekvsvvnvrikrhreyekpikskdplifsvGfRrfqakPifsqed.....tknnkhklerylkpghtcvatfygpitfpntpvlafkelsskeasf 193
                 +hE+k++v+n+ ++r++ey+      dpli++vG+Rrf ++P++sq+        nn+hk+eryl++g+t+vat+ygp++++++p+ +++e+++  +  
  CDO68962.1 575 QHEHKKTVLNFAVQRNTEYDG----SDPLILCVGPRRFLVNPVYSQHLrgggkGANNVHKFERYLRHGTTSVATIYGPVVYGKQPCTLLRETED-PQAP 668
                 *******************86....9*********************98887537************************************555.9*** PP

    RIBIOP_C 194 rlvatGsvlevdpsriivkrivLtGhpfkihkktaviryMFfnpedvawFkpveLrTksGrrGhIkeslgthGyfkatFddklkqsDiVlmslYkrvfp 292
                 +lva+Gs+l++d++rii+kri+LtGhpfkihkkta+iryMFfnpedv++Fkp++L+Tk+Gr+GhIkeslgthGy+ka+Fd++++q+D+V+mslYkrv+p
  CDO68962.1 669 ELVAMGSFLHPDTTRIIAKRIILTGHPFKIHKKTATIRYMFFNPEDVEYFKPIQLHTKYGRTGHIKESLGTHGYYKAHFDGPINQMDTVCMSLYKRVYP 767
                 **************************************************************************************************8 PP

>> AARP2CN  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   7.5e-21   4.5e-17       2      86 .]     234     306 ..     233     306 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 7.5e-21
     AARP2CN   2 ilnllrfisvqkfrplswReqrpyiladrveiltdseskeeeskedrtlsveGyvrGsplsanqlvHipglGDfqiekieklpdP 86 
                 +ln +r +s+ k+  ++wRe r+yila++v++++            + lsv+G+vrG++ls+n+l+H+p++GDfqi+ki ++p P
  CDO68962.1 234 TLNAIRALSEGKPSGVKWREGRSYILAENVDWTD------------GMLSVTGIVRGAHLSPNRLIHLPNYGDFQIAKIMSAPLP 306
                 6899***************************975............56788****************************998866 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05      0.16      17      41 ..     384     406 ..     377     407 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
   EF-hand_8  17 lglkkglseeevdilfrefDtdgdG 41 
                 +  +kg+se+++ ++++e D+dgdG
  CDO68962.1 384 I--PKGMSEYQAAWIIDESDEDGDG 406
                 3..336******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 5616.45
//
Query:       CDO68963.1  [L=843]
Description: hypothetical protein BN946_scf184782.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-91  307.5   0.3      2e-91  306.8   0.3    1.3  1  Vps53_N       Vps53-like, N-terminal
    1.2e-06   28.0   3.7    3.2e-06   26.6   3.7    1.6  1  Vps54_N       Vacuolar-sorting protein 54, of GARP complex
    3.7e-05   23.7   0.0    3.7e-05   23.7   0.0    3.4  5  VPS53_C       Vacuolar protein sorting-associated protein 53 
    0.00049   19.9   0.8      0.005   16.7   0.1    2.8  3  DUF2451       Protein of unknown function C-terminus (DUF2451
     0.0019   17.2   0.1     0.0019   17.2   0.1    3.2  4  RINT1_TIP1    RINT-1 / TIP-1 family
  ------ inclusion threshold ------
      0.012   15.6   3.2      0.012   15.6   3.2    3.3  4  DUF1664       Protein of unknown function (DUF1664)
       0.07   13.4   5.2       0.32   11.3   0.0    3.8  3  DUF948        Bacterial protein of unknown function (DUF948)
       0.23   11.3   4.7       0.58    9.9   3.8    2.1  2  Sec5          Exocyst complex component Sec5
       0.42   11.3   2.9          3    8.6   0.2    3.0  2  Occludin_ELL  Occludin homology domain
       0.74    9.8   7.6       0.13   12.3   3.1    2.0  2  RRP36         rRNA biogenesis protein RRP36
        8.2    5.9   7.8        1.8    8.1   2.5    2.4  3  DUF885        Bacterial protein of unknown function (DUF885)
        8.5    6.3  10.1        2.8    7.9   0.1    3.5  3  GIT_CC        GIT coiled-coil Rho guanine nucleotide exchange


Domain annotation for each model (and alignments):
>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.8   0.3   1.3e-94     2e-91       2     374 ..      48     415 ..      47     420 .. 0.93

  Alignments for each domain:
  == domain 1  score: 306.8 bits;  conditional E-value: 1.3e-94
     Vps53_N   2 adfsaleyinellpteqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiA 100
                 +df+++  +ne +p+e++l +++ + ++l e+ + l+ ei s+ ++     ++    ++ +q+ i++l+ +++ i++ka +se++v++it++I+ LD+A
  CDO68963.1  48 NDFDPIGVLNEYFPNEAALGQLEAVQARLAESERALQSEIDSLREELR-KDQD-PSRMQLIQEMISDLLGQMSRIREKATESEAVVRNITKEIQVLDLA 144
                 89**************************************99877665.4555.678999*************************************** PP

     Vps53_N 101 KknlttsiTtlkrLkmLvtavesleallskrsykeivsllqavlqllnhFekYkdvekIaeLsesisklkkslksqiledfkeaFssgsqkeketgnll 199
                 Kknl  s+TtlkrL+mLv+a+ +le  +++r+y +iv+ l av q+   F+ Y +v++I +L ++i++++++l s i +d+++ + +   k  +++   
  CDO68963.1 145 KKNLILSMTTLKRLQMLVNALSQLEDQIKERKYHDIVQTLAAVKQIGSSFKPYTSVPRISQLWRRIQEMQNELRSMIDADWDKFYVQDPSKPIKPS--- 240
                 ***********************************************************************************9954444444444... PP

     Vps53_N 200 ekledaCrvvdildpsvkeelikwfiekqLeeykkifreneeaasLdkldrRYawlkrklqdfeekykkiFpadWevaeRltveFckvTrkdlekilkr 298
                  +++daC+vvd+l p+v++++i+++++ +L+ey +ifr  +ea++Ld+l+rR+aw++r lq++e   +++Fpa+W+v   lt +F ++Tr+d++ +l +
  CDO68963.1 241 -VVADACLVVDVLGPDVRAQFIERYVALELKEYRRIFRATDEAGQLDNLSRRFAWFRRLLQTHETEQGRVFPAEWKVGWFLTAKFIEITRDDMTALLSK 338
                 .99************************************************************************************************ PP

     Vps53_N 299 kkkelsvkllllalqsTleFEklldkrFsntiskakkkke.kkelafegaisscFephltlyiesqektlsellekf 374
                    +l vk ll +lq+T+eFE+ l+k+F  ++ +  k+   ++     + i+s Feph+ +yi++q+k ls++l ++
  CDO68963.1 339 AGTKLTVKQLLDTLQETMEFEASLTKKFGVSLRELLKTITpPNPSRPLKPITSAFEPHMGVYIDAQDKVLSDMLAQY 415
                 ****************************8777776555540455567899**********************99876 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   3.7   2.1e-09   3.2e-06      11     187 ..      48     224 ..      46     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.1e-09
     Vps54_N  11 eefdpikyeLkklpddelsyesiekevkklksqhdvvskklsqlilekreefv.kelseveeiekelkesvvickngrraLdlakkeltrtsLellaks 108
                 ++fdpi  +L++  ++e+++ ++e+  ++l +  +++++ +  l  e r+  + + ++ ++e+ ++l   +  +++  ++ +   +++t+ ++++l   
  CDO68963.1  48 NDFDPI-GVLNEYFPNEAALGQLEAVQARLAESERALQSEIDSLREELRKDQDpSRMQLIQEMISDLLGQMSRIREKATESEAVVRNITK-EIQVLDL- 143
                 699999.6788888888***********************99887776655432678888888888888888887777777788888888.6666644. PP

     Vps54_N 109 kkrqllkkllktltaikelrelekrleelleeedysaAiqllletkqlaekysqyncvqels...sklqetlelveekldsq 187
                  k++l ++ ++tl+ ++ l ++ ++le+ ++e  y   +q l  +kq+ ++++ y++v+ +s   + +qe+ + +   +d++
  CDO68963.1 144 AKKNLILS-MTTLKRLQMLVNALSQLEDQIKERKYHDIVQTLAAVKQIGSSFKPYTSVPRISqlwRRIQEMQNELRSMIDAD 224
                 44455555.579*********************************************9876522268888888888888876 PP

>> VPS53_C  Vacuolar protein sorting-associated protein 53 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.9      0.51   7.5e+02      55     102 ..     103     149 ..      86     183 .. 0.78
   2 ?   -1.8   0.2       1.6   2.4e+03     178     199 ..     209     230 ..     204     232 .. 0.85
   3 ?   -3.8   0.0       6.7     1e+04     172     195 ..     292     315 ..     272     316 .. 0.81
   4 ?   -0.9   0.0      0.82   1.2e+03       3      22 ..     623     642 ..     621     645 .. 0.93
   5 !   23.7   0.0   2.5e-08   3.7e-05      41     138 ..     643     732 ..     631     736 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.51
     VPS53_C  55 vellkeilkslpeslseeestqstsakrvkkhidnniekllkfikllv 102
                 ++l++e+++ l  ++s+   +++t+++ v + i+++i+ l    k l+
  CDO68963.1 103 MQLIQEMISDLLGQMSR-IREKATESEAVVRNITKEIQVLDLAKKNLI 149
                 68888889999999977.677778888888899988876644444444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
     VPS53_C 178 llaqfeanllriqdpsWkkfik 199
                  +++ +++l+++ d++W kf  
  CDO68963.1 209 RIQEMQNELRSMIDADWDKFYV 230
                 6889999***********9965 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6.7
     VPS53_C 172 fkwnkkllaqfeanllriqdpsWk 195
                 f+w ++ll+++e++  r+  ++Wk
  CDO68963.1 292 FAWFRRLLQTHETEQGRVFPAEWK 315
                 899999999999999999999997 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.82
     VPS53_C   3 nflDkvidlitsefleciik 22 
                 nf+Dk  +++  +f++ ++k
  CDO68963.1 623 NFFDKAANTVLAKFTNALVK 642
                 9**************99987 PP

  == domain 5  score: 23.7 bits;  conditional E-value: 2.5e-08
     VPS53_C  41 vkkvinig.eqLlLDvellkeilkslpeslseeestqstsakrvkkhidnniekllkfikllvvpldspedYletYkrltknnknslvWafilalKgve 138
                 ++  ++ig eqLl+D++ +k  l ++p +      ++s+ +k v+kh     ++l +++k++v+p+d++e +  +Y+ ++ + +  + +  il lKg++
  CDO68963.1 643 SRPLMEIGaEQLLIDLQAIKACLLKIPGEA----LITSNYTKSVTKHT----TRLEALLKVIVTPVDPAEGFILNYTLVIGDVS-FSNFQKILDLKGTP 732
                 5666777659**************988765....67888899999996....4688899*****************99996655.44567788888875 PP

>> DUF2451  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.87   1.3e+03     117     145 ..     141     169 ..      78     222 .. 0.72
   2 ?   -0.5   0.0      0.59   8.7e+02     142     172 ..     489     521 ..     473     533 .. 0.80
   3 !   16.7   0.1   3.3e-06     0.005      71     168 ..     574     667 ..     514     694 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.87
     DUF2451 117 lpeevkkalweaavevvtetLvegyskvk 145
                 l  + k+++++ +     ++Lv+++s+ +
  CDO68963.1 141 LDLAKKNLILSMTTLKRLQMLVNALSQLE 169
                 34444455555555555666666666654 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.59
     DUF2451 142 skvkkcseeGRalMq..lDvqqllakleklski 172
                 +++kk s+ GR  M    Dv++l + ++ + + 
  CDO68963.1 489 ASMKKPSTFGRKSMEtrYDVTELKNACTLINTA 521
                 689***********7336999999988877765 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.3e-06
     DUF2451  71 slleaianvkWdvkevatehssYvdqllkevesfskklqelkerlklpeevkkalweaavevvtetLvegyskvkkcseeGRalMqlDvqqllaklek 168
                    ++++++ W   +  + +s+Yvd l+k +e+++++++ l+e+    ++    ++++a++ v   + +++ k +   e G  ++++D+q++ a l k
  CDO68963.1 574 PAFTTLSRTAWSTMKQVSGQSAYVDPLVKAIEEVAETVKPLVEQ----KKYLRNFFDKAANTVLAKFTNALVKSRPLMEIGAEQLLIDLQAIKACLLK 667
                 456788999*******************************7766....567778899**********************************9987665 PP

>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       0.3   4.5e+02     135     161 ..     161     187 ..      88     222 .. 0.59
   2 ?   -1.7   0.0      0.69     1e+03      94     115 ..     346     367 ..     288     378 .. 0.74
   3 ?    0.3   0.0      0.17   2.6e+02     215     279 ..     473     534 ..     454     536 .. 0.74
   4 !   17.2   0.1   1.3e-06    0.0019     337     451 ..     568     687 ..     548     751 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.3
  RINT1_TIP1 135 vfekWlevEkefalerfeeIisskdaw 161
                  ++   ++E ++  +++++I+++  a 
  CDO68963.1 161 LVNALSQLEDQIKERKYHDIVQTLAAV 187
                 234444444444444444444444444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.69
  RINT1_TIP1  94 alLshlisellsfdkeLrekyk 115
                 + L   ++e+++f+  L +k+ 
  CDO68963.1 346 KQLLDTLQETMEFEASLTKKFG 367
                 2567778999999999999986 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.17
  RINT1_TIP1 215 dqYherLkssleayesltstvgrtlqgetkeqqaelegvkglerlckiygsakylenaledwsde 279
                   + ++L+  +e+ +      ++t+ +++ e +     v++l++ c ++++a+y +++  +++++
  CDO68963.1 473 GLFKKWLRIYAEEVLVASMKKPSTFGRKSMETRY---DVTELKNACTLINTADYCHTTALELEEN 534
                 5677777777777776655555555443444444...7899*************99998888776 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.3e-06
  RINT1_TIP1 337 ikealkaYv...nksqWsslssssesslsvsselvellnllkrlldfLekal.skalfrriwrelleklqdllweevllrnkFseaGaaQlarDvealf 431
                 +++a+++ +   +++ Ws++++     +  s+ +++l++++++  ++++ ++  k+ +r+ ++++++++   +++ +++++   e Ga+Ql  D++a+ 
  CDO68963.1 568 LESACDPAFttlSRTAWSTMKQV----SGQSAYVDPLVKAIEEVAETVKPLVeQKKYLRNFFDKAANTVLAKFTNALVKSRPLMEIGAEQLLIDLQAIK 662
                 44444443334477799988865....5689999999999*********999889999***************************************** PP

  RINT1_TIP1 432 alvdryik.....elklkkLkealk 451
                 a + ++++     ++++k+++++++
  CDO68963.1 663 ACLLKIPGealitSNYTKSVTKHTT 687
                 *766666665556666666655543 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   3.2   8.3e-06     0.012      49     120 ..      68     141 ..      63     146 .. 0.90
   2 ?   -1.0   0.2       1.1   1.7e+03     107     107 ..     198     198 ..     150     224 .. 0.46
   3 ?   -2.2   0.1       2.7     4e+03      32      60 ..     325     355 ..     314     375 .. 0.55
   4 ?   -2.3   0.0       2.8   4.3e+03      65      81 ..     594     610 ..     557     628 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.3e-06
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqke..iskeikeevtevredlseigedvesvkeavegleskleri 120
                 qle v++ la+  r L+s+id++ ++l + ++    + i+e ++++ +++s+i+e+ ++ +++v+++ ++++ +
  CDO68963.1  68 QLEAVQARLAESERALQSEIDSLREELRKDQDpsRMQLIQEMISDLLGQMSRIREKATESEAVVRNITKEIQVL 141
                 9*************************988776115678*****************************9999876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
     DUF1664 107 k 107
                  
  CDO68963.1 198 T 198
                 1 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.7
     DUF1664  32 mfvTkrslsdavesvskqle..qvseslaat 60 
                 + +T+  ++  +++ +++l+  q+ ++l++t
  CDO68963.1 325 IEITRDDMTALLSKAGTKLTvkQLLDTLQET 355
                 4556666665555555554311333333333 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.8
     DUF1664  65 ssridrvdkkldeqkei 81 
                 s+ +d + k ++e++e+
  CDO68963.1 594 SAYVDPLVKAIEEVAET 610
                 22222222222222222 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.9       0.3   4.4e+02      45      83 ..     154     193 ..      82     199 .. 0.68
   2 ?   -1.0   0.1       1.4   2.1e+03      20      49 ..     344     373 ..     322     381 .. 0.66
   3 ?   11.3   0.0   0.00022      0.32      51      87 ..     578     614 ..     557     616 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.3
      DUF948  45 ilkevedllakvnelledvne.klekvdplteavadlges 83 
                 +lk ++ l++   +l ++++e k  ++ +  +av+++g s
  CDO68963.1 154 TLKRLQMLVNALSQLEDQIKErKYHDIVQTLAAVKQIGSS 193
                 3444444555555555555545666777777777777766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
      DUF948  20 vllklkktldeaaatieelekqvdpilkev 49 
                 ++++l +tl+e+ ++ ++l+k+ +  l+e+
  CDO68963.1 344 TVKQLLDTLQETMEFEASLTKKFGVSLREL 373
                 455556666666666666666666665555 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00022
      DUF948  51 dllakvnelledvneklekvdplteavadlgesvsel 87 
                 +l +++  ++++v+++++ vdpl++a+++++e+v+ l
  CDO68963.1 578 TLSRTAWSTMKQVSGQSAYVDPLVKAIEEVAETVKPL 614
                 34445556788**********************9866 PP

>> Sec5  Exocyst complex component Sec5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.8   0.00039      0.58      19     152 ..      84     221 ..      68     227 .. 0.82
   2 ?   -2.4   0.0       2.4   3.6e+03      43      67 ..     598     618 ..     560     626 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00039
        Sec5  19 kdtldqiykefseskteaqed..........slveeLeeslneairkttllfkpvlenkekadklraaleviernkflFnLPksLkesiakgdydklin 107
                 ++++d++++e+++++  +  +            +++++e+ +e+++   ++ k++       ++l   ++ ++r + l n  ++L+++i++++y+ +++
  CDO68963.1  84 QSEIDSLREELRKDQDPSRMQliqemisdllGQMSRIREKATESEAVVRNITKEIQVLDLAKKNLILSMTTLKRLQMLVNALSQLEDQIKERKYHDIVQ 182
                 56788888888776665555577866777776667777777777777777777766666666777788899**************************** PP

        Sec5 108 dYkkakslfestrqslveedkkqvkvfkkvwsevekiieeyrkkl 152
                   + +k+  +s+      +  + v+ +++ w  ++++ +e+r+++
  CDO68963.1 183 TLAAVKQIGSSF------KPYTSVPRISQLWRRIQEMQNELRSMI 221
                 ******999999......66789*************999999876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
        Sec5  43 eeLeeslneairkttllfkpvlenk 67 
                 + L     +ai++  +++kp++e+k
  CDO68963.1 598 DPLV----KAIEEVAETVKPLVEQK 618
                 3333....34444444555555555 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.7     0.051        76      30      98 ..     102     174 ..      68     174 .. 0.81
   2 ?    8.6   0.2     0.002         3      29      91 ..     156     219 ..     151     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.051
  Occludin_ELL  30 eleevskkfseLerelkelkegskeykkieeeilqeykklkk....dpeyqekkkrceyLkekLshiKklike 98 
                   +++ +++ +s+L  ++++ +e+ +e + ++++i +e + l          +++ kr++ L + Ls +  +ike
    CDO68963.1 102 RMQLIQEMISDLLGQMSRIREKATESEAVVRNITKEIQVLDLakknLILSMTTLKRLQMLVNALSQLEDQIKE 174
                   5677788888888999999999999999999998888765432001334577889999999999999999975 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.002
  Occludin_ELL  29 aeleevskkfseLerelkelkegsk.eykkieeeilqeykklkkdpeyqekkkrceyLkekLsh 91 
                   ++l+ + + +s+Le+++ke k ++  ++  ++++i +++k +++ p+  +  +r+++++++L+ 
    CDO68963.1 156 KRLQMLVNALSQLEDQIKERKYHDIvQTLAAVKQIGSSFKPYTSVPRISQLWRRIQEMQNELRS 219
                   678889999*********9999888899*********************************975 PP

>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.1   8.4e-05      0.13      59     150 ..      84     175 ..      76     183 .. 0.86
   2 ?   -3.3   0.1       5.2   7.8e+03      52      96 ..     259     302 ..     259     307 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.4e-05
       RRP36  59 ekEleelkkelkkekdkeeekeelkrelqrlesrekerekkererevlkelkkeekekvkegkkpfflkksekkkll.lkekfeelkkkkkle 150
                 ++E++ l++el+k +d +++ + +++ ++ l  ++ + ++k+ e+e++ +  ++e + ++  kk   l+   +k+l+ l++  ++l+++ k  
  CDO68963.1  84 QSEIDSLREELRKDQD-PSRMQLIQEMISDLLGQMSRIREKATESEAVVRNITKEIQVLDLAKKNLILSMTTLKRLQmLVNALSQLEDQIKER 175
                 79**************.********************9999999999999999999999*9*******9999988654899999997443433 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.2
       RRP36  52 aFLdeyrekEleelkkelkkekdkeeekeelkrelqrlesreker 96 
                 +F++ y + El+e ++  +++++ + + ++l r+    +  ++++
  CDO68963.1 259 QFIERYVALELKEYRRIFRATDE-AGQLDNLSRRFAWFRRLLQTH 302
                 58999999999999999997777.666666666665555544444 PP

>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.5    0.0012       1.8      98     159 ..      65     137 ..      32     190 .. 0.69
   2 ?   -1.9   0.0       1.3   1.9e+03     242     279 ..     327     364 ..     262     436 .. 0.73
   3 ?   -2.4   0.1       1.9   2.8e+03      98     121 ..     607     630 ..     509     684 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
                 CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT.-S-HHH.HHHHHHHHHHHHGTSSHHCCC..........H CS
      DUF885  98 teedleaylarlaavpaaldqaranlregaaaglvpprrq.vekvieqlrgllagaaaeasa..........l 159
                 +  +lea+ arla+  +al++ +++lre++++   p+r+q ++++i++l g+++ ++++a +           
  CDO68963.1  65 ALGQLEAVQARLAESERALQSEIDSLREELRKDQDPSRMQlIQEMISDLLGQMSRIREKATEseavvrnitkE 137
                 45689*****************************999665279999999999999988776644443332220 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHH-.HHHHHHHHHCH-GGGEEESHH CS
      DUF885 242 riraemeaiakevgfkgdlaevlaalrtdprfyleetd 279
                  +r  m a++ ++g+k ++++ l+ l+++ +f ++ t+
  CDO68963.1 327 ITRDDMTALLSKAGTKLTVKQLLDTLQETMEFEASLTK 364
                 45666666666666654566666666666555544443 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
                 CHHHHHHHHHHCCCHHHHHHHHHH CS
      DUF885  98 teedleaylarlaavpaaldqara 121
                  +e ++ +++  + +++++d a++
  CDO68963.1 607 VAETVKPLVEQKKYLRNFFDKAAN 630
                 222222222222223333333333 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0018       2.8      29      60 ..      63      94 ..      54      99 .. 0.89
   2 ?   -0.1   2.7      0.59   8.8e+02      29      64 ..     137     173 ..     132     175 .. 0.77
   3 ?    0.8   0.1      0.31   4.6e+02      41      56 ..     205     220 ..     200     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
      GIT_CC 29 eakiqqLlkvNtslsdelrlLQskvqkLqaeN 60
                ea + qL +v + l +  r LQs++++L +e 
  CDO68963.1 63 EAALGQLEAVQARLAESERALQSEIDSLREEL 94
                78899***********************9985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.59
      GIT_CC  29 eakiqqLlkvNtsls.delrlLQskvqkLqaeNaqlr 64 
                 e ++  L k N  ls + l++LQ  v+ L + ++q++
  CDO68963.1 137 EIQVLDLAKKNLILSmTTLKRLQMLVNALSQLEDQIK 173
                 6667778888887774679999999999999888876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.31
      GIT_CC  41 slsdelrlLQskvqkL 56 
                 +l + ++++Q+++ ++
  CDO68963.1 205 QLWRRIQEMQNELRSM 220
                 6777788888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1397  (0.0779185); expected 358.6 (0.02)
Passed bias filter:                      812  (0.0452898); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 5424.26
//
Query:       CDO68964.1  [L=928]
Description: hypothetical protein BN946_scf184782.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-41  141.9   1.7    2.1e-41  141.1   0.0    2.4  3  Autophagy_N      Autophagocytosis associated protein (Atg3), 
    1.1e-17   64.3   0.1    2.5e-17   63.2   0.1    1.7  1  Autophagy_act_C  Autophagocytosis associated protein, active-
    4.6e-12   45.2   1.8    9.1e-12   44.3   1.8    1.5  1  Autophagy_C      Autophagocytosis associated protein C-termin


Domain annotation for each model (and alignments):
>> Autophagy_N  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.64   3.8e+03      32      55 ..     122     145 ..     119     149 .. 0.80
   2 ?   -3.2   0.1       1.2   7.3e+03      75     119 ..     357     403 ..     352     414 .. 0.48
   3 !  141.1   0.0   3.5e-45   2.1e-41       2     114 ..     557     687 ..     556     726 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.64
                  XXXXXXXXXXXXXXXXXXXXXXXX CS
  Autophagy_N  32 FvaAGDyLvhkfptWsWasaeesk 55 
                    +AG y  +++p+  W++a +++
   CDO68964.1 122 HAQAGTYSYYNYPSNAWSNAWNAN 145
                  579**************9985554 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
                  XXXXXXX.............XXX---B----XX.....XXXXXXXXX CS
  Autophagy_N  75 ykRakqleeek.eeeeeiiededegwvkthkeekeee.eeevkdide 119
                    R ++ ++++  + +  i ++++g ++ + ++++ + +e++++ d+
   CDO68964.1 357 CARTDAKTQNRdLQMKYDIAKNEDGPLRRTLKSAQPAaQEAASSADK 403
                  45544443222022222233778888877755544333444444443 PP

  == domain 3  score: 141.1 bits;  conditional E-value: 3.5e-45
                  ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................. CS
  Autophagy_N   2 kstlssvreyltpvlkeSkFretGvitpeeFvaAGDyLvhkfptWsWasaeeskrksyLPkdKqfLvtrnVpcykRakql..eeekeeeeeiie.... 93 
                  ++++++vreyl+pvlk+SkF+e+G+itpeeFvaAGD+L +kfp WsW+++++sk+++yLP+dKq+Lvtr+Vpc +Ra++l  ++++e++e++++    
   CDO68964.1 557 EQQFWAVREYLSPVLKDSKFKEHGRITPEEFVAAGDFLAYKFPVWSWEKGDPSKARDYLPADKQYLVTRGVPCLRRATALayTDADEDAERLLSfgdl 654
                  67899*************************************************************************9966567777777777999* PP

                  ....XXX---B----XX............XXXX CS
  Autophagy_N  94 ....dedegwvkthkeekeee........eeev 114
                      +e ++wv+th+ +++++         +++
   CDO68964.1 655 sstgNEADEWVETHAGRSATQdtaahageIDDI 687
                  ***9999*******8876555565553332222 PP

>> Autophagy_act_C  Autophagocytosis associated protein, active-site domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   4.3e-21   2.5e-17       1      55 []     771     832 ..     771     832 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 4.3e-21
  Autophagy_act_C   1 ItYsktYqvPvlyfrlydedgtplsleelyed....sad..vtieehpllg.vpwysiHPCk 55 
                      ItY+k+Yq+P++++ +yde+gtpl++ ++++d    +a+  vtie +p++   + +s+HPCk
       CDO68964.1 771 ITYDKYYQTPRIWLVGYDENGTPLTPAQIFQDvsadHAFktVTIEAFPHSAtLQAASVHPCK 832
                      9********************************99966678********77588999****7 PP

>> Autophagy_C  Autophagocytosis associated protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   1.8   1.5e-15   9.1e-12       1      24 [.     902     925 ..     902     926 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.5e-15
  Autophagy_C   1 VdqYLviFLKFisSViPTIEyDyT 24 
                  Vd YLv+FLKFi+S++PTIE+D T
   CDO68964.1 902 VDFYLVVFLKFIASIVPTIEVDST 925
                  9*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 5762.94
//
Query:       CDO68965.1  [L=433]
Description: hypothetical protein BN946_scf184782.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-13   49.4   2.3    6.6e-13   48.3   2.3    1.6  1  zf-LYAR    LYAR-type C2HC zinc finger
  ------ inclusion threshold ------
      0.029   14.0   0.7        2.7    7.6   0.1    2.5  2  zf_UBZ     Ubiquitin-Binding Zinc Finger
       0.16   12.1   0.4       0.31   11.2   0.4    1.5  1  zf-ACC     Acetyl-coA carboxylase zinc finger domain


Domain annotation for each model (and alignments):
>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   2.3   1.1e-16   6.6e-13       1      28 []      29      57 ..      29      57 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.1e-16
     zf-LYAR  1 fsCiDCsktFdg.deykaHtsCItEaeKY 28
                f+C+DC+ tF+g  +yk+Ht CI+EaeKY
  CDO68965.1 29 FTCLDCHSTFEGpAQYKGHTTCISEAEKY 57
                9**************************** PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1   0.00046       2.7       2      20 ..       3      21 ..       2      22 .. 0.92
   2 ?    4.4   0.1    0.0046        27       2      13 ..      28      39 ..      27      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00046
      zf_UBZ  2 tylCerCgkeipeselqEH 20
                +++C+ Cg ++  ++l+ H
  CDO68965.1  3 SFQCDACGDTVKKPKLDKH 21
                699************9999 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0046
      zf_UBZ  2 tylCerCgkeip 13
                +++C +C+++++
  CDO68965.1 28 SFTCLDCHSTFE 39
                89******9987 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   5.2e-05      0.31       3      23 ..       5      25 ..       4      27 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.2e-05
      zf-ACC  3 KCpsCgemlykkeLernlyVC 23
                +C++Cg ++ k  L+++ + C
  CDO68965.1  5 QCDACGDTVKKPKLDKHRMSC 25
                9***************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2209  (0.123208); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                       256  (0.0142785); expected 17.9 (0.001)
Passed Fwd filter:                       131  (0.0073066); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.02u 0.38s 00:00:02.40 Elapsed: 00:00:00.57
# Mc/sec: 2291.37
//
Query:       CDO68966.1  [L=538]
Description: hypothetical protein BN946_scf184782.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-42  142.7   5.2    3.3e-42  142.7   5.2    3.5  4  Nkap_C      NF-kappa-B-activating protein C-terminal domain


Domain annotation for each model (and alignments):
>> Nkap_C  NF-kappa-B-activating protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   4.8         1   1.8e+04      70      91 ..     111     129 ..      80     141 .. 0.61
   2 ?   -5.6   6.9         1   1.8e+04      71      90 ..     254     273 ..     231     295 .. 0.60
   3 ?   -5.4   1.7         1   1.8e+04      59      75 ..     319     334 ..     305     340 .. 0.48
   4 !  142.7   5.2   1.9e-46   3.3e-42       2     101 ..     427     528 ..     426     529 .. 0.96

  Alignments for each domain:
  == domain 1  score: -5.7 bits;  conditional E-value: 1
      Nkap_C  70 saeekralallnkeekakrenk 91 
                 s +++r     ++ee+++re++
  CDO68966.1 111 SVDKERDR---EREERQERERE 129
                 33333332...34444444444 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 1
      Nkap_C  71 aeekralallnkeekakren 90 
                 +ee+r     ++ +kak+e+
  CDO68966.1 254 SEEERRKRERKERKKAKKEH 273
                 34444444444444455544 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 1
      Nkap_C  59 avrlrkenqvysaeekr 75 
                   r  k++ v  +e +r
  CDO68966.1 319 RSR-SKSKSVRRSESRR 334
                 222.3444455555444 PP

  == domain 4  score: 142.7 bits;  conditional E-value: 1.9e-46
      Nkap_C   2 vkygkallpGegealaqyvqeg..kRiPrRGevGltseeiekfekaGyvmsGsrhkrmnavrlrkenqvysaeekralallnkeekakrenkilselre 98 
                 ++yg+all+Geg+a+a+++q+g  +RiPrRGe+Gl+s+ei++fe++GyvmsGsrh+rmnavr+rkenqv+saeekr + +l++ee+++re+ +++e+++
  CDO68966.1 427 RQYGGALLRGEGSAMAAFLQDGtdQRIPRRGEIGLSSDEIATFEAVGYVMSGSRHRRMNAVRMRKENQVISAEEKRGILKLQQEERERREAILREEFQQ 525
                 79******************98446************************************************************************** PP

      Nkap_C  99 lvk 101
                 lv+
  CDO68966.1 526 LVE 528
                 *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2226  (0.124156); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                       256  (0.0142785); expected 17.9 (0.001)
Passed Fwd filter:                       106  (0.00591221); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.84u 0.41s 00:00:02.25 Elapsed: 00:00:00.59
# Mc/sec: 2748.39
//
Query:       CDO68967.1  [L=175]
Description: hypothetical protein BN946_scf184782.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   51.1   0.0    2.1e-13   50.6   0.0    1.2  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.2e-17   2.1e-13       1      99 [.      76     172 ..      76     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.2e-17
                 TTXSSB-HHHHHHHHHHHHHHHHHHHHTCCC.T---.SCEEEEEEE.EEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SS CS
        OsmC   1 gdgsgpsPeelllaalasCfaitlravakkk.gikl.edlevevea.erdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvk 96 
                 g+g+g +Pe+l+++++asCf  +l+  a+++ + +l e+++v++ +    p+ ++ i+++ l+ve+ ++g d     ++++++a++ Cp+s++lk+g +
  CDO68967.1  76 GKGDGQNPEQLFAMGYASCFLGALQLAAARAnKKELaENAKVTANVfLGHPSEPD-IDGFGLRVEINVEGCD----NDEIIAAAHEFCPYSRALKHGAE 169
                 7899*************************99455778889999998544444444.99999*****999966....4799******************* PP

                 SEE CS
        OsmC  97 vel 99 
                 v++
  CDO68967.1 170 VTV 172
                 997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1190.71
//
Query:       CDO68968.1  [L=193]
Description: hypothetical protein BN946_scf184782.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1470.29
//
Query:       CDO68969.1  [L=178]
Description: hypothetical protein BN946_scf184782.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-09   36.8   0.3    5.6e-09   36.1   0.3    1.3  1  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.3   3.1e-13   5.6e-09      28      96 .]       2      67 ..       1      67 [. 0.97

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 3.1e-13
  Retrotrans_gag 28 sWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqldevlteeakiekflaGLne 96
                    +++ l +af k+f+ ++  ++  +++ slrQ t s + Y+++f + +++ld  +tee k+++f +GL++
      CDO68969.1  2 NFDALVRAFVKRFQTTDLAAKYLTKIESLRQ-TGSAASYANQFLECLAYLD--WTEETKLTQFNRGLKP 67
                    799****************************.*******************..**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1239.61
//
Query:       CDO68970.1  [L=191]
Description: hypothetical protein BN946_scf184782.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.57
# Mc/sec: 1005.24
//
Query:       CDO68971.1  [L=781]
Description: hypothetical protein BN946_scf184777.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-85  287.2  12.3    3.8e-85  286.8  12.3    1.1  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.8  12.3   2.1e-89   3.8e-85       2     569 ..      43     641 ..      42     663 .. 0.76

  Alignments for each domain:
  == domain 1  score: 286.8 bits;  conditional E-value: 2.1e-89
    Ndc1_Nup   2 vlhrRfvhaallllllsyllslllsl.sssl...........lwswfplgpaglr.alllflsl.lpilvlrkaqlhvgprttssrlstllaslfslqt 86 
                 vl++R+ +     + +s l++++l++ + ++              ++p++p+++    + fl++ lp++vlrk +l + p++++s+   l +++ +++t
  CDO68971.1  43 VLRHRLYQI----FGHSALFCWALTTlWMTWssggmfgmglkESLLLPFRPSTVVfSGATFLAGaLPLVVLRKTHLVAAPTPATSPSRLLSGAFQKRST 137
                 667777555....5556666666665333443346677776633356666655555667778889********************************** PP

    Ndc1_Nup  87 letllvyllSal.......lfaevyiwslpedarlgwvtskssrerprlNerplflllsglvlalvysllhllfdrdrlsfkssfpivqpskyllkrlp 178
                  ++ll+yl+S+l       lf++ y  s+p +arl+ +++ks++++++lN   l++l+s++++a++  l+ +l dr+ ++++++  ++   k     l 
  CDO68971.1 138 TQALLTYLVSSLallglhiLFTGAYDSSAPAHARLT-LFVKSRKHPYYLNGHLLYILISQITVAFACLLRCVLLDRFAVRWANTLMSKGETKVQSFGLA 235
                 ************777777777777777********8.666788************************************99999999999998899999 PP

    Ndc1_Nup 179 silkkslilslvll..lvspiiyylllrsfiws..lalillrlfl.nlprsaapppldslpf..nlsLllrtlllgflllllwelanllFdvyltegpl 270
                 +i++ +l+ +++++  +v+ ++++++ rs+i+   + l+l++l+l ++++++ +  +++  +  ++sL+ r++ l++ ++  we a+ +Fd+ ++e+  
  CDO68971.1 236 RIVTVCLTTLVYTSlvTVAHLTIFAVARSVILPllYRLPLVHLVLrPFTAHFLRGAWTVSLLtrHWSLVSRAFYLAVTTVAVWEYAESAFDAIVAEP-- 332
                 99999995555555145555566777*******8766999***************988777789*********************************.. PP

    Ndc1_Nup 271 kkgkpisseskdpngtLlsGLkskkplvklfAfqELaliaqssp....srRkaIFsdidrkggstWsqilkeClklikeltqrinergqpapkaaps.. 363
                    + ++++++dp  tL+sG++s+  ++k+fA+ EL   a  ++    +rR+a+Fsd+++++ s+W  +++e+l+++++++q + +rg+pap+aa+   
  CDO68971.1 333 ---IVVAHQTADPGLTLVSGITSTESYLKHFAYAELRDFAAANSpaasARRTALFSDQKYSP-SMWATLSRESLLTLGRDYQLLLRRGKPAPPAAAAsv 427
                 ...88*********************************9999999*****************.**************************7777777546 PP

    Ndc1_Nup 364 ..kapknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqs.......psptarls........prarklleka 445
                   ++p+   + pv+++p + +s  k         ++++ +++  + ss + +++a+s++a++ ++                        ++a ++++ka
  CDO68971.1 428 vhSKPT--VPLPVPATPLVRTSVYKPA-------PTSPIRAALDTFSSDGPLAAAVSETAEAGVSHipelfrsV------MpaspqhraQQAVETVKKA 511
                 442222..2233333333332233332.......2333344445556667777777777877665564334321......2333342335555555555 PP

    Ndc1_Nup 446 ksrllskeqkealsestikkk.......vekelaq.llk..spligylFrqslrrrlealvsnpqliinaieaLsnLvvaSltEDqyGvVqrdvpeIlr 534
                 +++++       l+++t +k+       ++ +l + +++   +   +  r+  +r +e  ++n  + + a+eaL++L++ SltED++GvVqrd+p+I++
  CDO68971.1 512 EENVVA------LVKETKSKWrsglgnaLNAYLPRgIMQtaIQITSWWTRERVHRVAETSLPNRYVDALAAEALCRLTCSSLTEDKFGVVQRDIPKIIE 604
                 555555......4444444445556666444444445543322346888999999999999999999999***************************** PP

    Ndc1_Nup 535 tLtsllealekfkeglpahwt.......dekgeaesskresp 569
                 +L+s+l+ale+++++l a+ t       +     e s++e +
  CDO68971.1 605 ALLSFLTALEEYQAELNASYTlpppdklK-----ELSSKEIA 641
                 ************77999998888754331.....22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.40s 00:00:01.17 Elapsed: 00:00:00.56
# Mc/sec: 4174.10
//
Query:       CDO68972.1  [L=372]
Description: hypothetical protein BN946_scf184777.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2263.24
//
Query:       CDO68973.1  [L=175]
Description: hypothetical protein BN946_scf184777.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-33  113.7   0.0    6.5e-33  113.5   0.0    1.0  1  Redoxin   Redoxin
    1.4e-07   31.5   0.0    1.8e-07   31.1   0.0    1.2  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   7.2e-37   6.5e-33       1     147 []       7     172 ..       7     172 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 7.2e-37
                 -TTSBB---E...........CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHH..HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH...T CS
     Redoxin   1 kagdkaPdft...........lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehp..yleklaellkekgvdvvavvadndafvkefwgk...e 83 
                 k+gd++P  t           ++ a+  ++++s++e+k kkv++++vpgaf+P C a+h   yl+k++el k+kg+d++avv++nd+fv + w++    
  CDO68973.1   7 KVGDEVPQGTfvhvpytpelaDASACGIPTKLSTDEWKAKKVLIFAVPGAFTPSCHANHAppYLAKVDEL-KSKGIDIIAVVSANDPFVLSGWSRilgF 104
                 689999988888999999988777899999999999***********************99*********.***************************9 PP

                 T-TSEEEE-TTSHHHHHTT-TTEEE.GGG.....EEE-EEEEEEETTEEEEEEESSSCHT.STTSHHHHH CS
     Redoxin  84 glkfpvlsDgsaaftkalGlrleedaseg.....lrtpryavidedgkvvylevepepet.eesnaeavl 147
                 g k++ lsD++a+++++lG  l++d s+       rt rya++ +d kv+yl+vep+p++ ++s+++avl
  CDO68973.1 105 GDKIIALSDPDAQWSEKLG--LTVDLSSAgiglgKRTTRYAIVLDDLKVKYLGVEPDPTQvTVSGVDAVL 172
                 99*****************..5677776669999************************77*******998 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     2e-11   1.8e-07      17     117 ..      37     148 ..      21     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2e-11
                 EEECHHHTTSEEEEEEESTST-CCHH.HHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H...SSEEEE-TTSHHHHHTT-EETT....... CS
    AhpC-TSA  17 tvslsdykgkpvvlffypkdwcpvCt.telpalaklyeefkergvevigvsv.dspeshkkfiekes..lnfpllsDeegkvakaygvlkee....... 104
                 + s ++ k k+v++f +p++++p C  +++p + ++++e+k++g+++i+v + ++p+ +  + +  +   ++  lsD++ + ++++g+  +        
  CDO68973.1  37 KLSTDEWKAKKVLIFAVPGAFTPSCHaNHAPPYLAKVDELKSKGIDIIAVVSaNDPFVLSGWSRILGfgDKIIALSDPDAQWSEKLGLTVDLssagigl 135
                 567788899****************73689******************97655***********9997788999**************98888888877 PP

                 TTECSCEEEEE-T CS
    AhpC-TSA 105 kglalratfvidk 117
                  + ++r ++v+d+
  CDO68973.1 136 GKRTTRYAIVLDD 148
                 7777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1306.82
//
Query:       CDO68974.1  [L=217]
Description: hypothetical protein BN946_scf184777.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-35  121.9   0.0    2.2e-35  121.5   0.0    1.1  1  Redoxin   Redoxin
    1.6e-11   44.2   0.0    2.3e-11   43.7   0.0    1.2  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0   2.5e-39   2.2e-35       1     147 []      52     214 ..      52     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 2.5e-39
                 -TTSBB---E...........CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHH..HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH...T CS
     Redoxin   1 kagdkaPdft...........lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehp..yleklaellkekgvdvvavvadndafvkefwgk...e 83 
                 k+gd++P  t            + a+  + +++++e+kgkkvv+++vpgaf+PtC a+h+  +lek++e+ k+kgvdv+a++a+ndafv + w++   +
  CDO68974.1  52 KVGDTIPRGTftyipytpeleNQSACGIPVKLNTDEWKGKKVVLVSVPGAFTPTCHANHVppFLEKYDEF-KKKGVDVIAIIAANDAFVLSGWARflgL 149
                 578888877777888888888788999999999999*******************************999.*************************998 PP

                 T-TSEEEE-TTSHHHHHTT-TTEEE.GGG...EEE-EEEEEEETTEEEEEEESSSCHT.STTSHHHHH CS
     Redoxin  84 glkfpvlsDgsaaftkalGlrleedaseg...lrtpryavidedgkvvylevepepet.eesnaeavl 147
                 + k++ lsD++a ++++lG  l++d s+     rt+rya++ +d kv+y++vepe+ + ++s+a+a+l
  CDO68974.1 150 KDKILALSDPNARWSAQLG--LAQDLSAVdfgTRTKRYALVLDDLKVKYVGVEPER-GvTVSGADAIL 214
                 889****************..5566666666***********************99.88*****9987 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.6e-15   2.3e-11       9     123 ..      72     196 ..      67     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.6e-15
                 EEESTTCEEEEC..HHHTTSEEEEEEESTST-CCHH.HHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H...SSEEEE-TTSHHHHHTT-E CS
    AhpC-TSA   9 elknadgetvsl..sdykgkpvvlffypkdwcpvCt.telpalaklyeefkergvevigvsv.dspeshkkfiekes..lnfpllsDeegkvakaygvl 101
                 e + a g +v+l  ++ kgk+vvl+ +p++++p C  +++p + ++y+efk++gv+vi++++ ++ + +  +++  +   ++  lsD++   + ++g+ 
  CDO68974.1  72 ENQSACGIPVKLntDEWKGKKVVLVSVPGAFTPTCHaNHVPPFLEKYDEFKKKGVDVIAIIAaNDAFVLSGWARFLGlkDKILALSDPNARWSAQLGLA 170
                 45555566777742455******************7379*********************9989999*******999445677789************* PP

                 ETT.....TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 102 kee.....kglalratfvidkegkiry 123
                 ++       + + r + v+d + k++y
  CDO68974.1 171 QDLsavdfGTRTKRYALVLD-DLKVKY 196
                 98899885445555555555.456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1576.97
//
Query:       CDO68975.1  [L=335]
Description: hypothetical protein BN946_scf184777.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-64  216.2   0.6      6e-64  216.2   0.6    2.0  2  Pex19          Pex19 protein family
  ------ inclusion threshold ------
       0.23   12.0   2.9         14    6.3   2.9    2.4  1  DUF937         Bacterial protein of unknown function (DUF937)
        1.2    9.3   7.8        2.5    8.2   7.8    1.5  1  MAGI_u5        Unstructured region on MAGI


Domain annotation for each model (and alignments):
>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.8     0.016        96      29      66 ..      13      50 ..       2      68 .. 0.72
   2 !  216.2   0.6     1e-67     6e-64       3     243 ..      75     334 ..      74     335 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.016
       Pex19 29 aeedfeellkqleeaaeaaaeaksaeasssaaeskaee 66
                + +d +++l+q+++ a ++a+a++a+++ss+++s++++
  CDO68975.1 13 DLDDLDDVLEQFNKPAPKPAAAPAAAPASSSSTSQTPS 50
                56788999999999888888888777777776663333 PP

  == domain 2  score: 216.2 bits;  conditional E-value: 1e-67
       Pex19   3 eeefakqlekemeelmkel.............keeeeeeaeedfeellkqlee...........aaeaaaeaksaeasssaaes..kaeeesfqdiikk 75 
                 +++fa++l+k+me+l ++              k ee +++ee ++++ +++e+            ++ a ++k+ae +s++      a+++sfqd ikk
  CDO68975.1  75 DDDFARELTKGMESLFRDIaqgaglgdipdlgKVEEGTTDEERERAFKAAWEAmlvegmngtiaPEDVAGKGKTAEDASAS--GpaGAPTDSFQDNIKK 171
                 689****************9********99985555555777777777777777778887775433333333333333333..2458999********* PP

       Pex19  76 TlerLkesgdkvdaaaeseeknsddllaqlLkqLeagadvegeggeegedlekmllgmmeqLssKevLyePlkelnekfpewLeenkeklsaedlerYe 174
                  +e+Lkes++kv  a   e++++ d l+++++ L  ++d +g ++e+  dl+++l++mm+qL+sKevLyePlkel++kfp +Le+n++kls++d++rY 
  CDO68975.1 172 MMEKLKESDRKVGLAD--EATSKGDGLEDIFSRL--SGDIDGTESED--DLKGLLENMMSQLMSKEVLYEPLKELHDKFPSYLEDNASKLSEDDKKRYA 264
                 ************9998..899999**********..43455555545..************************************************** PP

       Pex19 175 kQaeivkeIvakFekedysdedkekreeilellqelqelGspPkeLvgdmpegle....glpkleaeeegCkq 243
                 +Q +iv+eIva+Fe+++ysd+d++k  +++el+qe+qe+GspP+e++g +p+g++    glp+l+   egC++
  CDO68975.1 265 SQSKIVAEIVATFEDPSYSDDDPQKGLKVVELMQEMQEYGSPPAEIMGPLPPGFDlgpdGLPSLP---EGCTI 334
                 *******************************************************9766666666...99986 PP

>> DUF937  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.9    0.0023        14      39      78 ..     184     230 ..      22     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0023
      DUF937  39 galaqnaaspgGlgdLlgallggglgg........ggLgdllsllqng 78 
                 g++ + +++++Gl+d+++ l +g+ +g        g L+++ s+l  +
  CDO68975.1 184 GLADEATSKGDGLEDIFSRL-SGDIDGteseddlkGLLENMMSQLMSK 230
                 44444558888889999888.577777777888876666666665544 PP

>> MAGI_u5  Unstructured region on MAGI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.8   0.00043       2.5      39      81 ..      31      69 ..      23      72 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00043
     MAGI_u5 39 Pshsslalplsesvappppsq.plpslpiqdpadgtiqkkPDPf 81
                P+ ++ a+p+s s+++ +ps+  lp      +a ++ qkkPDPf
  CDO68975.1 31 PAAAPAAAPASSSSTSQTPSKdALP-----AQASSSSQKKPDPF 69
                5556666666666555555541334.....578899******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      849  (0.0473534); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2300.23
//
Query:       CDO68976.1  [L=515]
Description: hypothetical protein BN946_scf184777.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-97  324.9  10.4    4.6e-97  324.7  10.4    1.1  1  Solute_trans_a  Organic solute transporter Ostalpha
  ------ inclusion threshold ------
       0.25   10.8   0.0       0.39   10.2   0.0    1.2  1  Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofa


Domain annotation for each model (and alignments):
>> Solute_trans_a  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.7  10.4  5.2e-101   4.6e-97       2     265 .]      20     287 ..      19     287 .. 0.97

  Alignments for each domain:
  == domain 1  score: 324.7 bits;  conditional E-value: 5.2e-101
  Solute_trans_a   2 liiagvfallallislililqhlrhytkpseQrkiirIllmvpiyavsSllsllfpsaavylelvrdcYeafviysFfsllleylggeealikal 96 
                     l++ag+++++a+l+s  +i+ hl++y+kp++Qr+++rI+lmvp+ya+ S++sl++ +aa+++++vrd+Yeafviy+Ff ll++ylgge++l+  l
      CDO68976.1  20 LLVAGLCTVVATLVSATSITLHLKNYRKPHLQRQVVRIMLMVPLYAIASFISLFSLEAAFFIDVVRDIYEAFVIYCFFDLLIAYLGGERSLLILL 114
                     689******************************************************************************************** PP

  Solute_trans_a  97 erdekkk.llplnlclekvklt.lkflkrcklgvlQyvvvkpllaivslileslgvyce.sfspkfaylyltiiynvsvtlAlyalllfykalkk 188
                     +++++k  ++p  l+ ++v+++ +++++++k+gv+Qyv vkp++a++++il+++g+y+e +++  ++yly++i+ynvs++lAly+l++f++++++
      CDO68976.1 115 HGRPPKYpAFPASLFWKEVDVSdPYTFLFLKRGVIQYVQVKPIIALATVILKAIGKYNEgDLRAGSGYLYVSIVYNVSICLALYCLAIFWMCVND 209
                     ***876669************99***********************************769********************************** PP

  Solute_trans_a 189 eLkpfkpvlKflciklvvfltfwQglvlsilvkvgviketkk.lsaediaagiqnllicvEMvlfailhlyaFpykeY 265
                     +Lkpf+p++Kflc+k+++f++fwQ++++silv+ g+ik+    ++ e+i+ g+ ++lic+EM++fa++h+yaF+ ++Y
      CDO68976.1 210 DLKPFRPMPKFLCVKGILFFCFWQSIFISILVAGGAIKKLGPyTDREHISLGLTDTLICFEMPFFAVAHMYAFSTRDY 287
                     *********************************9999886656899******************************99 PP

>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.4e-05      0.39      55     104 ..     394     442 ..     380     454 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.4e-05
  Porphobil_deam  55 tkeleeaLlegeidlaVhSlKDlptel.peglelaavlkredprDvlvvks 104
                     t+e+ + Ll+++++ +Vh++ Dl + + +eg+ l a ++ +   D+lv  +
      CDO68976.1 394 TEEVYAPLLRQQAEDVVHAAPDLRSPTnDEGFSLFASTTAAADDDALV--E 442
                     8899999****************99762579*****************..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3712.87
//
Query:       CDO68977.1  [L=294]
Description: hypothetical protein BN946_scf184777.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-09   37.1   0.1    4.4e-09   36.6   0.1    1.3  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   2.4e-13   4.4e-09      18     159 ..       4     159 ..       1     225 [. 0.76

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.4e-13
                 ETT.--EEEEEE-TT......S-HHHHHHHHHHHHHHH.HTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHC CS
         APH  18 tpa.gryvlrrnppa......raaeeirrevallrlLa.kagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpellealgefla 103
                  ++ ++y+l+ +ppa      +++++++ e+all+lL+ ++ +p P ++a+dt+    +++++l++   g +l+      kls++q+  l  + g++l+
  CDO68977.1   4 ASDgTSYILKAAPPAstasvnYSPNTLETEHALLKLLSsQTSIPHPTIHAFDTSSSIVPYPYLLLSHPRGVPLSAarasgKLSPRQAALLDLRTGAYLK 102
                 44537******99999999999999*************66666************************99999999999**99***************** PP

                 CHHCH.-STTTB-.........SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH CS
         APH 104 alhqvdpaalpla.........dflaqdlellrqlesatarllaselldlleeleeqvlaalaal 159
                 +lh+v+ ++ +l+         + +a+++ l+ +le+a+++++a+ ++d        v++ l + 
  CDO68977.1 103 QLHDVQNDWFGLPsqaqdalysWQEAFTPLLEGLLEDAQRAGVALPYED--------VRRYLSRA 159
                 *****88877777444444444555565556666666666666666666........33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2055.52
//
Query:       CDO68978.1  [L=286]
Description: hypothetical protein BN946_scf184777.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2150.80
//
Query:       CDO68979.1  [L=327]
Description: hypothetical protein BN946_scf184777.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-14   52.1  13.3    2.2e-10   40.8   0.2    4.3  3  HMG_box         HMG (high mobility group) box
    1.1e-13   51.5   7.8    1.2e-10   41.8   0.2    3.9  3  HMG_box_2       HMG-box domain
     0.0061   16.5   2.1       0.41   10.6   0.0    2.6  2  ApoO            Apolipoprotein O
     0.0069   15.8  12.7     0.0069   15.8  12.7    2.3  2  DUF4407         Domain of unknown function (DUF4407)
  ------ inclusion threshold ------
       0.27   11.8   3.7         12    6.6   0.1    3.1  3  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext
       0.82    9.5   3.6         15    5.5   0.1    3.1  3  DUF1289         Protein of unknown function (DUF1289)


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4  11.9         6   1.8e+04      44      64 ..     103     123 ..      83     138 .. 0.67
   2 !   40.8   0.2   7.4e-14   2.2e-10       1      68 [.     153     221 ..     153     222 .. 0.92
   3 !   21.8   8.1   6.1e-08   0.00018       2      68 ..     250     321 ..     249     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: -6.4 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  44 eeeKkkYeekaekekaryeke 64 
                 ++eK+k +e+a+keka+ +++
  CDO68979.1 103 AAEKAKAREQAQKEKAKAKAK 123
                 445555555555555555443 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 7.4e-14
                 --SS--HHHHHHHHHHHHHHHH.STTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkae.nPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 p++p  af +f+ ++ + l a     +k a+isk +++ W+++++e+Kk+Y++ka++  ++y k+ +e+
  CDO68979.1 153 PPKPSGAFAFFVADHVRGLQARtEGPIKFADISKGASAAWRDMTDEQKKPYFDKARQSLEEYTKAAEEW 221
                 899************999877514559**************************************9998 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 6.1e-08
                 -SS--HHHHHHHHHHHHH.....HHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqrakl.....kaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 kRp   ++ f+ e+  ++     +  n + + a +s++l+++Wkal+eeeK kY +++eke  + e+  +++
  CDO68979.1 250 KRPKQPYVAFVTENYHQVpvppeVMANHRERLAYVSRELSARWKALPEEEKTKYVQRYEKELSEWEERQKAR 321
                 8999999999999988763333333444556899***************************99998877665 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.1  12.7         6   1.8e+04      37      67 ..     101     131 ..      82     136 .. 0.73
   2 !   41.8   0.2     4e-14   1.2e-10       2      72 ..     154     221 ..     153     222 .. 0.90
   3 !   20.1   2.7   2.4e-07   0.00071       5      57 ..     250     306 ..     246     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: -8.1 bits;  conditional E-value: 6
                 GGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
   HMG_box_2  37 klcsekWkalseeeKekYeekAkedkkrydr 67 
                 k++ ek ka ++++Kek + kAk  k+++++
  CDO68979.1 101 KAAAEKAKAREQAQKEKAKAKAKLEKEKARA 131
                 5556666666777777777778777777665 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 4e-14
                 --.-SS--HHHHHHHTTHHHHHHHT--.-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2   2 kkpkaarnAYalfvqemipelkrkGnp.viglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72 
                 +kp +   A+a+fv +    l+++  + +i++a++sk +s  W+ + +e+K++Y +kA++  ++y + a ++
  CDO68979.1 154 PKPSG---AFAFFVADHVRGLQAR-TEgPIKFADISKGASAAWRDMTDEQKKPYFDKARQSLEEYTKAAEEW 221
                 45544...****************.666************************************99987665 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 2.4e-07
                 -SS--HHHHHHHTTHHHHHHH....T---SSHHHHTGGGHHHHHHS-HHHHHHHHHH CS
   HMG_box_2   5 kaarnAYalfvqemipelkrk....GnpviglaevsklcsekWkalseeeKekYeek 57 
                 k+++  Y+ fv+e   ++        n + +la vs+++s +Wkal+eeeK+kY ++
  CDO68979.1 250 KRPKQPYVAFVTENYHQVPVPpevmANHRERLAYVSRELSARWKALPEEEKTKYVQR 306
                 5666688888888888776665555667899999********************875 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.9     0.011        33      10      68 ..      96     154 ..      64     157 .. 0.86
   2 !   10.6   0.0   0.00014      0.41      19      48 ..     203     232 ..     193     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
        ApoO  10 eeptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkeppedllP 68 
                 e+ +++ ++  +++R++++++ ++++++l+k k ++++ ++ +   + +Lk  +++l P
  CDO68979.1  96 EAARKKAAAEKAKAREQAQKEKAKAKAKLEKEKARANDPKSRFDGPLRTLKVRKDELPP 154
                 5666667777899******************************9999999998877766 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
        ApoO  19 gvrslRkslepytsavqdelnkvkskveta 48 
                 ++ ++R+sle+yt+a++++++k  +++ +a
  CDO68979.1 203 YFDKARQSLEEYTKAAEEWYKKSDPRIVKA 232
                 799*******************99998765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  12.7   2.3e-06    0.0069     157     260 ..      48     159 ..      25     165 .. 0.75
   2 ?    0.8   0.8     0.085   2.6e+02     180     208 ..     199     250 ..     182     327 .] 0.56

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-06
     DUF4407 157 dalraeaqkeldgtk......gtgttgvaGkgpaakekkaqldaaqaelaelkakld..atarlaalraelaeleaerakeraasqaaaaaddGllarl 247
                 +a++a+a++  dg++      g +t+ +a kg+a +ek+a++ aa++e +++++k    ++++++++++e+a+++a+++ke+a+ ++ ++ +dG l  l
  CDO68979.1  48 AATKAKADDASDGKPktaktaG-RTKTKATKGKALTEKQAAALAAKKEREAARKKAAaeKAKAREQAQKEKAKAKAKLEKEKARANDPKSRFDGPLRTL 145
                 4455566666666666667542.334577888899999999999999999999997777889999999***************************9988 PP

     DUF4407 248 ea.ldrltkedata 260
                 +   d+l  + ++a
  CDO68979.1 146 KVrKDELPPKPSGA 159
                 87666666555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.085
     DUF4407 180 Gkgpaakekkaqldaaqaelaelkakld.......................a 208
                  k p+++++++ l++++++ +e+ +k+d                       +
  CDO68979.1 199 QKKPYFDKARQSLEEYTKAAEEWYKKSDprivkalslqghplpkvpqaqdtK 250
                 5667777777777777777777777755555555555444444444443330 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.2   6.7e+03      26      38 ..      76      90 ..      70      92 .. 0.70
   2 ?    4.8   0.0     0.014        41      24      49 ..     189     215 ..     183     215 .. 0.88
   3 ?    6.6   0.1    0.0039        12      21      46 ..     286     312 ..     277     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
  Arg_decarbox_C 26 a..grLtpeerqall 38
                       ++Lt+++++al 
      CDO68979.1 76 TkgKALTEKQAAALA 90
                    245689999999885 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
  Arg_decarbox_C  24 eaa.grLtpeerqalleeleagLkgyT 49 
                      aa  ++t+e+++ ++++ +++L++yT
      CDO68979.1 189 SAAwRDMTDEQKKPYFDKARQSLEEYT 215
                     455779********************9 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0039
  Arg_decarbox_C  21 rqveaa.grLtpeerqalleeleagLk 46 
                     r + a  ++L++ee+ ++++++e  L+
      CDO68979.1 286 RELSARwKALPEEEKTKYVQRYEKELS 312
                     555566889**************9997 PP

>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0051        15      27      46 ..     190     209 ..     187     211 .. 0.85
   2 ?    3.5   0.1      0.02        61      27      46 ..     290     309 ..     285     311 .. 0.86
   3 ?    0.0   0.2      0.26   7.7e+02      21      39 ..     306     324 ..     305     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0051
     DUF1289  27 aaWssmsdeerravlarleq 46 
                 aaW++m+de+++   ++++q
  CDO68979.1 190 AAWRDMTDEQKKPYFDKARQ 209
                 68*********988877765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.02
     DUF1289  27 aaWssmsdeerravlarleq 46 
                 a+W+++ +ee+++ ++r e+
  CDO68979.1 290 ARWKALPEEEKTKYVQRYEK 309
                 69***********9998775 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.26
     DUF1289  21 RtldEiaaWssmsdeerra 39 
                 R  +E ++W++ +++++++
  CDO68979.1 306 RYEKELSEWEERQKARKAE 324
                 7889******999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2884  (0.160857); expected 358.6 (0.02)
Passed bias filter:                      833  (0.046461); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 2321.17
//
Query:       CDO68980.1  [L=405]
Description: hypothetical protein BN946_scf184777.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-09   36.0   2.0    0.00067   19.9   0.3    3.0  2  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.4e-06     0.062      14      40 ..      38      64 ..      25      93 .. 0.82
   2 !   19.9   0.3   3.7e-08   0.00067      43     117 ..     195     287 ..     177     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-06
                HHHHHHHHTTCTHHHHHHHHHHHHHTS CS
         RGS 14 lFreFlesefseenlsFwlaveefkka 40
                +F  Fl++e +e+ l+Fwl+v++ ++ 
  CDO68980.1 38 MFYLFLQREGAEDILDFWLDVQQHENL 64
                6999******************99876 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.7e-08
                 HHHHHHHHHHHHHHHTSTT.......STTSSTS-HHHHHHHHHHHCSS.................STTTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHH CS
         RGS  43 qeelkkkakeIyneylaps.......spkelnidkklreelekrleke.................qpsrklfeeaqeevfellekdsypkFlkselylr 117
                 +++l++ a++Iy +yl+p+        ++e+ ++ +lr +                          + +++f++ +e++++ +e+d++p+Fl+ + + +
  CDO68980.1 195 RQDLIASAERIYYRYLSPAgtapgatENHEIYLPPALRIHS------FplssshepksqseialmAQIPDMFHAQKEYCYRAMEQDAFPRFLRAKAFGN 287
                 67788888888888887762211111235556666665443......122224577888889998999*************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3235.13
//
Query:       CDO68981.1  [L=94]
Description: hypothetical protein BN946_scf184777.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-15   56.1   0.0    3.4e-15   55.7   0.0    1.2  1  L51_S25_CI-B8   Mitochondrial ribosomal protein L51 / S25 / C
  ------ inclusion threshold ------
      0.061   12.6   0.0      0.063   12.6   0.0    1.1  1  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   3.8e-19   3.4e-15       1      51 [.      29      79 ..      29      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 3.8e-19
                   HHHHHTTTTHHHHTT-TTSEEEEEESS-SS-EEEEE-SS--B--EE-SS-- CS
  L51_S25_CI-B8  1 aRkFwrknLprlkykNPavpivvrrrsgdgPallaiYfngrektidlknkn 51
                   aR+F++ ++p+lk++NP++pi++r+++g+  +++a++++g ek i +++++
     CDO68981.1 29 ARQFITTHYPTLKQHNPDLPILIRQAKGTPARIFARFERGQEKHIEVEGLS 79
                   7**********************************************9987 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.1e-06     0.063      72     104 ..      25      57 ..       5      79 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.1e-06
                     TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHH CS
  Methyltransf_2  72 GtGalakaivsayPtikvivfDlpeVveaAkeh 104
                      +  + + i+++yPt+k  + Dlp  +++Ak  
      CDO68981.1  25 ASAGARQFITTHYPTLKQHNPDLPILIRQAKGT 57 
                     333345789*********************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 639.83
//
Query:       CDO68982.1  [L=167]
Description: hypothetical protein BN946_scf184777.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-31  107.3   0.0    7.7e-31  107.1   0.0    1.0  1  adh_short       short chain dehydrogenase
      2e-19   70.1   0.0    2.4e-19   69.8   0.0    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.4e-06   27.2   0.0    2.6e-06   27.1   0.0    1.1  1  Epimerase       NAD dependent epimerase/dehydratase family
    3.6e-06   27.0   0.1    5.7e-06   26.4   0.1    1.3  1  KR              KR domain
      4e-05   23.6   0.2      5e-05   23.3   0.2    1.1  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   2.2e-34   7.7e-31       4     139 ..       9     146 ..       6     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 2.2e-34
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklgkldvLvnNAGi.tgsgpfselseee 100
                 +vtGas+G+G+a+ k+++++G +vv+++r+ ++   +++    +++++l++q+Dvt  +++v+ +v++av+++g++dvLvnNAG+  g+gp +e   + 
  CDO68982.1   9 FVTGASRGLGLALTKRILARGDRVVATARNLNAFDPLLADPSTDRSRILILQLDVTsPADAVQGVVREAVEHWGRIDVLVNNAGMgGGVGPSEEQGVDH 107
                 7*****************************************99************66788999*********************88899999999999 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvag 139
                 + +v+ +N+tg++++t+avlp+m k+ +G++   +S ++
  CDO68982.1 108 MMEVMRTNYTGTLSVTHAVLPHMRKRCAGTVLLFGSRTA 146
                 *******************************99999776 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   6.6e-23   2.4e-19       1     128 [.      12     143 ..      12     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 6.6e-23
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHH.HHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeq.vealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga +g+G a+ k++ ++G +vv+t +n +a +  +++  ++ ++  +l++DVt++++ v+ +v+e+ve++g++D+lvnnag+     gp +e   ++
    CDO68982.1  12 GASRGLGLALTKRILARGDRVVATARNLNAfDPLLADPSTDRSRIlILQLDVTSPADaVQGVVREAVEHWGRIDVLVNNAGMGGG-VGPSEEQGVDH 107
                   999*************************9965555555554443345*******8754999***********************9.9********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEE CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnlss 128
                   + +++ +n ++++++++a+lp+m+++  g ++   s
    CDO68982.1 108 MMEVMRTNYTGTLSVTHAVLPHMRKRcaGTVLLFGS 143
                   ************************998888877666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.3e-10   2.6e-06       2     119 ..       9     147 ..       8     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.3e-10
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HH.....HHHHHHHHH.T-SEEEE--S.---HHHHHHSHHH. CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrs.....alerlfkee.qpdavihlAa.vggvaassedpad. 86 
                 +VtGa+  +G al+k++l++g +v++ +r+ +a+   + +         + +ld+t ++      ++++++   ++d+ ++ A+  ggv+ s e+  d 
  CDO68982.1   9 FVTGASRGLGLALTKRILARGDRVVATARNLNAFDPLLADPStdrsriLILQLDVTSPAdavqgVVREAVEHWgRIDVLVNNAGmGGGVGPSEEQGVDh 107
                 7*****************************9999999888889***99899999999988667778888888799***************999988763 PP

                 ...HHHHHTHHHHHHHHHHHHHTCT....EEEEEEEGGGG CS
   Epimerase  87 ...fieknlqgtlnlleaarkagvk....rllflsSsevY 119
                    ++++n  gtl + +a+  +  k     +l ++S + Y
  CDO68982.1 108 mmeVMRTNYTGTLSVTHAVLPHMRKrcagTVLLFGSRTAY 147
                 2227789***********9977444233456666665555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   1.6e-09   5.7e-06       3     124 ..       8     127 ..       7     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.6e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-H.HHHHHHHHHHHHHSS---EEEE------.---TTT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdk.davealleeikaeeppikGvihaAgvlr.dkllee 99 
                  ++tG+  gLGl+l++ ++++g r +v ++R+   + + + l+a  +    ++ ++++Dv+++ dav+ +++e+ ++ ++i   ++ Ag+    ++ ee
  CDO68982.1   8 WFVTGASRGLGLALTKRILARGDR-VVATARN--LN-AFDPLLADPSTDRSRILILQLDVTSPaDAVQGVVREAVEHWGRIDVLVNNAGMGGgVGPSEE 102
                 579*******************86.7889999..44.445599999999***********986268999*****9999**********99875899*** PP

                 --HHHHHHHHTTTTHHHHHHHHHTT CS
          KR 100 mtaedleqvlapKvkGawnLhelle 124
                 +  +++ +v++   +G+  + +++ 
  CDO68982.1 103 QGVDHMMEVMRTNYTGTLSVTHAVL 127
                 *****************99987765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   1.4e-08     5e-05       1      88 [.      12     115 ..      12     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.4e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE--TT-CCH.HHHHHT.......T-SEEEES---TCC....HHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevvegdvtdved.laealk.......gadaVvsalggggk....deega 78 
                     GA+ + G +l+k++larg  +v+a +Rn + ++ l      +++++ ++++dvt+++d ++ +++        +d+ v ++g gg+    +e+g+
      CDO68982.1  12 GASRGLGLALTKRILARG-DRVVATARNLNAFDPLLadpstDRSRILILQLDVTSPADaVQGVVReavehwgRIDVLVNNAGMGGGvgpsEEQGV 105
                     9****************6.9********99998554233336679999*******8553444444555577677998888865555577788999 PP

                     HHHHHHHHHC CS
  NAD_binding_10  79 knivdaakea 88 
                     ++++++++++
      CDO68982.1 106 DHMMEVMRTN 115
                     9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1276.85
//
Query:       CDO68983.1  [L=1616]
Description: hypothetical protein BN946_scf184777.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.8e-121  404.7   0.0   5.8e-121  404.1   0.0    1.2  1  EPSP_synthase   EPSP synthase (3-phosphoshikimate 1-carboxyvi
   2.1e-102  341.8   0.1   9.6e-102  339.6   0.0    2.1  2  DHQ_synthase    3-dehydroquinate synthase
    3.4e-56  191.0   0.0    6.6e-56  190.1   0.0    1.5  1  DHquinase_I     Type I 3-dehydroquinase
    3.9e-33  114.8   0.0    2.6e-32  112.2   0.0    2.1  2  SKI             Shikimate kinase
    8.8e-27   93.2   0.0      3e-26   91.5   0.0    2.0  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    3.2e-09   36.9   0.1    1.2e-08   35.0   0.0    2.0  2  Fe-ADH_2        Iron-containing alcohol dehydrogenase
    2.1e-06   27.4   0.4    7.2e-06   25.7   0.0    2.1  2  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
    3.5e-06   27.1   0.0    9.1e-06   25.8   0.0    1.6  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.038   14.1   0.0    1.7  1  AAA_33          AAA domain
      0.047   14.0   0.0       0.22   11.8   0.0    2.2  1  AAA_22          AAA domain
       0.12   12.8   0.0       0.36   11.2   0.0    1.8  1  AAA_16          AAA ATPase domain
       0.15   11.4   0.0       0.29   10.4   0.0    1.4  1  AAA_8           P-loop containing dynein motor region D4
       0.18   11.1   0.0        0.3   10.4   0.0    1.2  1  6PF2K           6-phosphofructo-2-kinase


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.1   0.0  4.2e-124  5.8e-121      12     417 .]     409     850 ..     400     850 .. 0.93

  Alignments for each domain:
  == domain 1  score: 404.1 bits;  conditional E-value: 4.2e-124
                    E--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-.HHHHTT-GGGGGGHHHHHHHHSEES CS
  EPSP_synthase  12 kvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeap.eelvldlgnsgtalrlLtallalas 106
                      pGsksisnralllAaL++g+++++nlL+s+D++ m++al eL++++  +++ +e+++v+g  g++++p  +  ++lgn+gta r+Lt +++l++
     CDO68983.1 409 ATPGSKSISNRALLLAALGTGTCRLKNLLHSDDTQVMMNALVELQGAKFDWEDGGETLVVNGGAGALSVPrDGKEIYLGNAGTAARFLTTVCTLVQ 504
                    579*******************************************************************9889*******************966 PP

                    .....SEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET..SS-BEEEEETSSTTHHHHHHHHHHHTTSBS.EEEEES..-TTHH CS
  EPSP_synthase 107 .....gevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg..lklkgveikaevsSqqvtsllllaallaeg.ttelee..lasep 192
                          ++v+tG++++++RPi +l+daLr++G  ie++e ++++pl +    lk+  ++++a+vsSq+v+s+ll+a+  ae  t+el++  ++s+p
     CDO68983.1 505 tqssgQRTVITGNARMKQRPIGPLVDALRANGSSIEYLESQGCLPLSIAPagLKGAHIQLAASVSSQYVSSILLCAPYAAEPvTLELTGgqVISQP 600
                    6899999*****************************************9988999999999****************88888************** PP

                    HHHHHHHHHHHTT-EEEETTSSE.....EEEEE--SS.B--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEE CS
  EPSP_synthase 193 siddtlkmlkkfgikietsgtee.....sitvkGkek.lpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeit 282
                    +id+t+ m+k+fgi++  +++++      ++  +k    + +ey +e+DassA+y+l+ Aaitg++ t++n+g  slqGd+++++e+le mg+++ 
     CDO68983.1 601 YIDMTIAMMKTFGIEVVRESDPQtgkllDVYRIPKGVyRNPVEYNIESDASSATYPLAIAAITGTTCTITNIGSASLQGDARFAKEVLEPMGCKVI 696
                    ****************99877774555545666666675556****************************************************** PP

                    EESTSEEEEEET...TS--BEEEEEBGSTTSBHGGGHHHHHH...............HHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTE CS
  EPSP_synthase 283 qeedasivvgps...glklkdvdietlpdeaptlavlaafae...............gttviegiaelrvketdrlaamateLrklGaeveeeedg 360
                    q+e++++v gp+      l  vd+e ++d+++t+ vlaa+a+               +tt+i gia++rvke++r++am++eL+k+G+e+ e++dg
     CDO68983.1 697 QTETETTVTGPPvgqLRALGLVDMEPMTDAFLTASVLAAVATrpplpertlqdgsnpNTTRIIGIANQRVKECNRIKAMIDELAKFGVETLELDDG 792
                    ************9955556678************************************************************************** PP

                    EEEEEEEE...EB-EEEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 361 liiipaek..qlkgaevesydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                    l++++  +    +g+ v++ydDhR+ama++++g ++++ ++i++  c++k++p+++++L
     CDO68983.1 793 LEVYGKPIeeLKQGVSVHCYDDHRVAMAFSVLGSIIKE-TIIEEKRCVEKTWPNWWDDL 850
                    **66554463346899*****************88887.*****************987 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.6   0.0    7e-105  9.6e-102       2     261 ..      72     357 ..      71     358 .. 0.98
   2 ?   -1.4   0.0      0.73     1e+03      17      42 ..     941     964 ..     933     966 .. 0.73

  Alignments for each domain:
  == domain 1  score: 339.6 bits;  conditional E-value: 7e-105
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   +vv++ge+sKs e  ++i d+ll +k++R+++++alGGGv+gDl+GfvAat++RGvrfvq+Pttlla+vDssvGgKtai++p+gKNliGaf+qP+++
    CDO68983.1  72 YVVAPGETSKSREGKAEIEDFLLLNKCTRDTVILALGGGVIGDLVGFVAATFMRGVRFVQIPTTLLAMVDSSVGGKTAIDTPHGKNLIGAFWQPEYI 168
                   7899********************************************************************************************* PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC.................TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGG CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallk.................eeeeealeeliarsievkaevveeDekekglral 178
                   +id+++L+tLp+re+++G+aEviK+a+i+de+ f++le++a+++++                 +  ++ l ++ia si vka++v+ De+e+glr+l
    CDO68983.1 169 FIDAAFLETLPAREFSNGMAEVIKTAAIWDEKEFASLESRAAEIFAaiqtpsvnfagrtestrSPAQQLLLSVIAGSIGVKAHIVTIDERETGLRNL 265
                   ********************************************999*************99867889999************************** PP

                   GGTTHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT...........-HHHHHHHHTTCTTX CS
  DHQ_synthase 179 LnlGHtigHaiEallgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel..........leveellealkkDkkv 261
                   +n+GHtigHaiEa+l++ ++lHGe+Va+Gmvl+ae++++lg+l++ +v rl+++lk+++lpvsl++           l+v++ll+++k Dkk+
    CDO68983.1 266 VNFGHTIGHAIEAVLTP-AMLHGECVAVGMVLEAEVARQLGVLSQVAVGRLTRCLKAYNLPVSLSDPrisslptarsLSVSKLLDIMKIDKKN 357
                   *****************.***********************************************9999****99999**************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.73
                   HHHHHHHHHTT--TT-EEEEEESHHH CS
  DHQ_synthase  17 ekildalleakleRksllialGGGvv 42 
                   ++il++lle++   ++ +i+lGGG+v
    CDO68983.1 941 TEILKELLEQNG--REHVISLGGGIV 964
                   466677776654..46799*****98 PP

>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0   4.8e-59   6.6e-56       2     229 .]    1086    1318 ..    1085    1318 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 4.8e-59
                   EEE--SSHHHHHHHHHHHTTS-SEEEEEGGG-.TT.T..........HHHHHHHHHHHHHHTTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHH CS
  DHquinase_I    2 vpitgktleeilaelesgkekaDlvElRlDllketse..........aedvseeleelrstsdlpliftlrtkaeggrfkrkseeeylellrtaie 87  
                   +++t +++  +l  ++ +++++D++E+R+Dll+++++          +++v+e++  lr ++++plift+rt ++gg+f++ se+e++el+ ta++
   CDO68983.1 1086 LCLTYPDITPALPYVQDMAAGVDAIEVRVDLLRSPKDfdklgpyvpsTNYVTEQITALRHKTSVPLIFTVRTVSQGGQFPDHSEKEAFELFFTAVR 1181
                   678888899888889999779***********99988***********************99********************************** PP

                   CT-SEEEEEGG-.HHGHHHHHHHHHHHTT-EEEEEEEESS----HH..HHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-E CS
  DHquinase_I   88 lgadyvDvElteapeeskkrlieekreggtkvIvSyhdfegtpsae..elkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeapl 181 
                   lg++y+DvE++  +e++ ++li++k  g++++I+S+hd +g   ++   ++a+++ ++++g DivK++  a+  eD+++l ++  ++++++d++p+
   CDO68983.1 1182 LGVEYIDVEIS-WSEKNIQDLIAHK--GHSQIIASWHDWSGNMHWDskLVEAKYHAAHDIG-DIVKLVGKANGLEDNFALHNFVLRMQAARDAKPI 1273
                   **********5.5555788999998..*******************866899*********.***************************999**** PP

                   EEEE-TTTTGHHHCHHHHHTB-EEEEESSS-..SSTT-EEHHHHHHHH CS
  DHquinase_I  182 IamamGelGkiSRilgevfGspvtfasleeakasapGqltarelreil 229 
                   Ia++mG +G++SRil+ +f spvt++    ++++apGql++++++++l
   CDO68983.1 1274 IAINMGVEGQMSRILNSTF-SPVTHPL--LPSKAAPGQLSFAQIQTAL 1318
                   *******************.*******..5566**********99876 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.86   1.2e+03      53      73 ..      92     112 ..      82     114 .. 0.75
   2 !  112.2   0.0   1.9e-35   2.6e-32       1     142 [.     890    1037 ..     890    1049 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.86
                 HHHHHHCCCSSEEEEE-TTGG CS
         SKI  53 evlkelleeeglViatGGGav 73 
                  +l + ++++ +++a+GGG++
  CDO68983.1  92 FLLLNKCTRDTVILALGGGVI 112
                 45555566669********97 PP

  == domain 2  score: 112.2 bits;  conditional E-value: 1.9e-35
                  TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCS..SEEEEE-TTGGGSHHHHHHHH...HHSEEEEEE CS
         SKI    1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleee..glViatGGGavlseenrellk...ekgiviyLd 92  
                  +G+GK+ +Gkl A +l+++f+D+D ++e++ +  ++e+++++g+++Fre E+e+lkelle++  ++Vi++GGG+v+++ +r++lk   +kg+v+++ 
  CDO68983.1  890 RGSGKTFIGKLAASTLRWQFVDADAYFEQKHQIGVREFVQKNGWSAFREAETEILKELLEQNgrEHVISLGGGIVETPTARDILKaytQKGPVVHIV 986 
                  7************************************************************************************************ PP

                  --HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECT CS
         SKI   93 vsleellerlkadkeRPllqekskeeelleela.ereplyeeaadvvvdes 142 
                  ++++e++++l +++ RP + e+  +  +++  + +++ +ye ++   v +s
  CDO68983.1  987 REIDEVISYLGEETARPGYGEPVIDVFKRRAPWfAECCSYEFVNYTGVLTS 1037
                  ************************999*************99987666555 PP

>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   2.2e-29     3e-26       1      83 []    1331    1412 ..    1331    1412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 2.2e-29
                      EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHH.HHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N    1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekave.elralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83  
                      ++Gnpi+hS+SP +hn+af+algl+++ye++++e  ++ + ++ ++ ++++ G++vTiPfK++++plld lse+A+aigAvNt+
      CDO68983.1 1331 LFGNPIAHSMSPTLHNTAFEALGLPHKYELLQTE--AVGEEIKtAVTSPDFGGASVTIPFKRDIMPLLDALSEDAEAIGAVNTV 1412
                      79*******************************9..666665505566***********************************8 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   8.5e-12   1.2e-08      12     250 .]      30     291 ..      22     291 .. 0.71
   2 ?   -2.6   0.0       2.6   3.6e+03      63      87 ..     940     964 ..     917     980 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 8.5e-12
    Fe-ADH_2  12 ellkelelkkvllvadentkkaagekveeslkeagikvevveeveeead....leeveklveal...reketdlvvavGgGtiiDiakyvsak..lnvp 101
                  + k l  ++ +lv+d+n+ +++  + + +++ ++ ++++++ v +  +     e  +++ + l   + ++ ++++a+GgG+i D++ +v+a+  ++v+
  CDO68983.1  30 TVTKTLPSSTYVLVTDTNVGNLYVPAFQTEFDARKGQARFLTYVVAPGEtsksREGKAEIEDFLllnKCTRDTVILALGGGVIGDLVGFVAATfmRGVR 128
                 445566778999*****************99999888875444433333111133333333333443556667****************986533799* PP

    Fe-ADH_2 102 yvsvpTa..aSvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaeklve 198
                 +v +pT+  a vD+      ++ + + k  +     P  +++D  +l++ P+r    G+++++ k  a+ d+k   +++  +a+  aa+   +++ + +
  CDO68983.1 129 FVQIPTTllAMVDSSVGGKTAIDTPHGKNLIGAFWQPEYIFIDAAFLETLPAREFSNGMAEVI-KTAAIWDEKEFASLESRAAEIFAAIQTPSVNFAGR 226
                 ******944467888888899999998998867788*************************99.66677776666666665555555555555555555 PP

    Fe-ADH_2 199 dkketealeellealalsgigi...........srpa....SGsEHliSHaldmlalkqalHGeqVG 250
                  +  ++  ++ll +++ + ig+           +  +        H i Ha++++ +   lHGe V+
  CDO68983.1 227 TESTRSPAQQLLLSVIAGSIGVkahivtidereT--GlrnlVNFGHTIGHAIEAVLTPAMLHGECVA 291
                 5555555566666665555555544444565330..266668888**********99999***9885 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.6
    Fe-ADH_2  63 eveklvealreketdlvvavGgGti 87 
                 e e l e l++++ + v+++GgG +
  CDO68983.1 940 ETEILKELLEQNGREHVISLGGGIV 964
                 33334455577899999****9976 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4       9.4   1.3e+04      11      17 ..    1171    1177 ..    1171    1177 .. 0.90
   2 !   25.7   0.0   5.3e-09   7.2e-06       1      24 [.    1579    1602 ..    1579    1606 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9.4
                  HHHHHHH CS
       SDH_C   11 eqFelWT 17  
                  e+Fel++
  CDO68983.1 1171 EAFELFF 1177
                  79***97 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 5.3e-09
                  HHHHHHHHHHHHHHHHHS----HH CS
       SDH_C    1 GLgMLveQgaeqFelWTGrepPve 24  
                  G++ L+eQg+ qF+lWTGr  P  
  CDO68983.1 1579 GVEVLLEQGYDQFHLWTGRHCPKG 1602
                  99*****************99875 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.6e-09   9.1e-06      11      65 ..    1448    1500 ..    1440    1520 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.6e-09
                    TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEE CS
  Shikimate_DH   11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealk 65  
                    + + +l+iGaG +++ ++ +L + gvk+v  +NRt++ a++l+  + +++i  + 
    CDO68983.1 1448 QPEAALVIGAGGTSRAAIYALWKLGVKNVYLFNRTRTSAETLVATFPEVHI--KL 1500
                    56789*****************************************88844..44 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.8e-05     0.038       2      66 ..     884     951 ..     884     992 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg...tdqqsktdytrvldrlyqilnelarka 66 
                 v+l+G+ GsGK++  +  +  l +++++ d+++++      ++  +k+ ++ +++  ++il+el++++
  CDO68983.1 884 VVLIGMRGSGKTFIGKLAASTLRWQFVDADAYFEQKHQigvREFVQKNGWSAFREAETEILKELLEQN 951
                 789****************99***********998777667666688889999999999999999754 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.22       3      70 ..     879     950 ..     876     990 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsst.sskdllrellralglelka 70 
                 +++ ++v++G  G+GKT+  +  +++l ++++ +     e+++++ v   +++ +++ ++++  ++l++ l+ 
  CDO68983.1 879 SSRASVVLIGMRGSGKTFIGKLAASTL-RWQFVDAdayfEQKHQIGVREFVQKnGWSAFREAETEILKELLEQ 950
                 578899*******************99.7888888999*9999999998888889999999888888877666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00026      0.36      18      63 ..     875     919 ..     861    1017 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdggif..lrgkcdql 63 
                 ++ +++  +v+l+G++G+GK+ + + ++  l+ +   f  + + ++q 
  CDO68983.1 875 PTDDSSRASVVLIGMRGSGKTFIGKLAASTLRWQ---FvdADAYFEQK 919
                 344444499*************998888655533...32344444443 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.29      24      68 ..     881     922 ..     878     946 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
       AAA_8  24 rghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefre 68 
                 r+ + l+G+ GsG+  + kLAa+ ++ +++       y e++ + 
  CDO68983.1 881 RASVVLIGMRGSGKTFIGKLAASTLRWQFVDAD---AYFEQKHQI 922
                 67899********************99997543...233333333 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00022       0.3       7      45 ..     875     913 ..     870     944 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
                 HHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EE CS
       6PF2K   7 tnlknsklvivlvGLpargKtyiskkltrylkwlgvrtk 45 
                 +++++s+  +vl+G++  gKt+i k     l+w  v++ 
  CDO68983.1 875 PTDDSSRASVVLIGMRGSGKTFIGKLAASTLRWQFVDAD 913
                 567789999****************9999***9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 10275.44
//
Query:       CDO68984.1  [L=913]
Description: hypothetical protein BN946_scf184777.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6666.80
//
Query:       CDO68985.1  [L=425]
Description: hypothetical protein BN946_scf184777.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-08   34.2  17.0    8.5e-06   26.0   1.3    4.0  4  zf-C2H2     Zinc finger, C2H2 type
    1.8e-05   25.2  14.5      0.012   16.4   0.6    4.1  4  zf-C2H2_4   C2H2-type zinc finger
    3.5e-05   24.0  16.0     0.0076   16.6   0.1    3.9  4  zf-H2C2_2   Zinc-finger double domain
  ------ inclusion threshold ------
      0.013   15.4   2.7        1.3    9.1   0.1    2.7  2  zf-C2H2_6   C2H2-type zinc finger
      0.035   14.4   1.2      0.035   14.4   1.2    2.3  3  zf-Di19     Drought induced 19 protein (Di19), zinc-binding
      0.098   12.5   9.4        1.3    8.9   0.1    4.1  4  GAGA        GAGA factor
        0.2   12.1   0.8        1.6    9.2   0.2    2.8  2  Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
          1   10.1   3.4         11    6.7   0.2    2.9  3  FOXP-CC     FOXP coiled-coil domain
        1.4    8.8   7.5         11    5.9   1.3    2.6  2  zf-H2C2_5   C2H2-type zinc-finger domain
        2.2    6.7   6.5        2.7    6.4   6.5    1.1  1  Rrn6        RNA polymerase I-specific transcription-initiatio


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.5   0.00013      0.24       2      23 .]      19      38 ..      19      38 .. 0.96
   2 !   26.0   1.3   4.7e-09   8.5e-06       1      23 []      46      70 ..      46      70 .. 0.98
   3 ?    5.2   0.5     0.018        32       6      23 .]      92     110 ..      92     110 .. 0.90
   4 ?   -2.6   0.0       5.4   9.7e+03       4      11 ..     275     282 ..     275     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  2 kCpdCgksFkrksnLkrHirtH 23
                +Cp+C k F  k +L+rH+++H
  CDO68985.1 19 QCPICYKDF--KRDLRRHMQSH 38
                7********..99*******99 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 4.7e-09
                EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCp..dCgksFkrksnLkrHirtH 23
                y+C+  dCg++F++ snLk+H+ tH
  CDO68985.1 46 YVCTfpDCGRRFRQESNLKTHMTTH 70
                99**********************9 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.018
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 C  +F++ s+L rH++  H
  CDO68985.1  92 CAACFRDGSMLLRHRKLnH 110
                 6679***********9988 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 5.4
                 TTTTEEES CS
     zf-C2H2   4 pdCgksFk 11 
                 p+C+  F+
  CDO68985.1 275 PHCNLAFS 282
                 68**9996 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.9   6.5e-05      0.12       2      23 ..      19      38 ..      19      39 .. 0.85
   2 !   16.4   0.6   6.8e-06     0.012       1      23 [.      46      70 ..      46      71 .. 0.93
   3 ?    2.7   0.3      0.16   2.9e+02       6      22 ..      92     108 ..      90     110 .. 0.86
   4 ?   -1.5   0.0       3.6   6.5e+03       4      11 ..     275     282 ..     273     287 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.5e-05
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkth 23
                +CpiC k F  k++L+rH+++h
  CDO68985.1 19 QCPICYKDF--KRDLRRHMQSH 38
                7****8888..6778******9 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.8e-06
   zf-C2H2_4  1 fkCpi..CgksFsskkaLlrHlkth 23
                + C++  Cg++F+  ++L++H+ th
  CDO68985.1 46 YVCTFpdCGRRFRQESNLKTHMTTH 70
                7899999*****99999*******9 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.16
   zf-C2H2_4   6 CgksFsskkaLlrHlkt 22 
                 C + F++ + LlrH k 
  CDO68985.1  92 CAACFRDGSMLLRHRKL 108
                 8899*99999****986 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.6
   zf-C2H2_4   4 piCgksFs 11 
                 p+C+  Fs
  CDO68985.1 275 PHCNLAFS 282
                 89*99996 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.017        30      16      26 .]      19      29 ..       9      29 .. 0.90
   2 !   16.6   0.1   4.2e-06    0.0076       1      24 [.      30      57 ..      30      59 .. 0.91
   3 !   12.1   0.8   0.00011       0.2       1      18 [.      62      79 ..      62      83 .. 0.94
   4 ?   -2.5   0.4       4.9   8.8e+03       2       9 ..     102     110 ..     101     115 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.017
   zf-H2C2_2 16 eCplCdkaFkt 26
                +Cp C k Fk+
  CDO68985.1 19 QCPICYKDFKR 29
                8********96 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.2e-06
   zf-H2C2_2  1 nLrrHirkHt..gekpyeCp..lCdkaF 24
                +LrrH+ +H   +e+py C    C+ +F
  CDO68985.1 30 DLRRHMQSHLdlSESPYVCTfpDCGRRF 57
                69******************88899999 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00011
   zf-H2C2_2  1 nLrrHirkHtgekpyeCp 18
                nL+ H+ +Ht e+p  Cp
  CDO68985.1 62 NLKTHMTTHTRERPKYCP 79
                89************9999 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.9
   zf-H2C2_2   2 LrrHirk.H 9  
                 L rH +  H
  CDO68985.1 102 LLRHRKLnH 110
                 779*99636 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.6     0.011        20       4      25 ..      20      39 ..      19      40 .. 0.84
   2 ?    9.1   0.1   0.00073       1.3       7      25 ..      53      71 ..      51      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
   zf-C2H2_6  4 CsvCsksFpslqaLggHkksHr 25
                C++C+k F+   +L+ H+ sH 
  CDO68985.1 20 CPICYKDFKR--DLRRHMQSHL 39
                ********97..8888888886 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00073
   zf-C2H2_6  7 CsksFpslqaLggHkksHr 25
                C+++F+   +L +H+ +H 
  CDO68985.1 53 CGRRFRQESNLKTHMTTHT 71
                ******************6 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.2     2e-05     0.035       4      52 ..      19      70 ..      16      72 .. 0.77
   2 ?   -3.5   0.0       7.4   1.3e+04      15      26 ..     100     111 ..      92     115 .. 0.61
   3 ?   -3.9   0.1        10   1.8e+04       6      13 ..     275     282 ..     275     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
     zf-Di19  4 tCPyCgkeltvkeLveHvedeHrveskevvC..PvCaekvtk..dlvaHltle 52
                +CP C+k+++   L +H++++   ++ ++vC  P C  + ++  +l  H+t++
  CDO68985.1 19 QCPICYKDFKR-DLRRHMQSHLDLSESPYVCtfPDCGRRFRQesNLKTHMTTH 70
                69999999975.79999999777788899995555887765444899999876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.4
     zf-Di19  15 keLveHvedeHr 26 
                 + L++H + +H 
  CDO68985.1 100 SMLLRHRKLNHG 111
                 456677777765 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 10
     zf-Di19   6 PyCgkelt 13 
                 P+C+ +++
  CDO68985.1 275 PHCNLAFS 282
                 99*98775 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00071       1.3      26      44 ..      19      35 ..       3      40 .. 0.80
   2 ?    4.4   0.1     0.019        33      21      44 ..      42      67 ..      36      76 .. 0.82
   3 ?    3.1   0.1     0.047        85      30      52 ..      92     114 ..      88     115 .. 0.93
   4 ?   -3.0   0.2       3.7   6.7e+03       5      28 ..     169     192 ..     166     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00071
                E-TTT--EESSHHHHHHHH CS
        GAGA 26 tCPiCqAviRqsRnLRRHL 44
                 CPiC+   +  R+LRRH+
  CDO68985.1 19 QCPICYKDFK--RDLRRHM 35
                5*****9765..9*****8 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.019
                TS--EE-..TTT--EESSHHHHHHHH CS
        GAGA 21 sEqPAtC..PiCqAviRqsRnLRRHL 44
                sE P  C  P C    Rq  nL+ H+
  CDO68985.1 42 SESPYVCtfPDCGRRFRQESNLKTHM 67
                67776554499**************8 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.047
                 T--EESSHHHHHHHHHHHTTTS- CS
        GAGA  30 CqAviRqsRnLRRHLELRHFkkP 52 
                 C A  R    L RH  L H  kP
  CDO68985.1  92 CAACFRDGSMLLRHRKLNHGYKP 114
                 999****************9998 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 3.7
                 --S-SS-----CCCCTTS--EE-T CS
        GAGA   5 vikrkdgllkiksksqsEqPAtCP 28 
                 ++ +k++    k  s s+   t P
  CDO68985.1 169 RAAKKPASRSLKASSRSNAVSTTP 192
                 566677777778888887766666 PP

>> Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00092       1.6       3      26 ..      20      38 ..      19      39 .. 0.89
   2 ?   -0.6   0.0       1.1   1.9e+03       6      26 ..      53      70 ..      51      70 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00092
  Zn-C2H2_12  3 CPlCseqFpknvdqdeFeeHVesH 26
                CP+C + F+       +++H+ sH
  CDO68985.1 20 CPICYKDFKR-----DLRRHMQSH 38
                *********9.....788999888 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
  Zn-C2H2_12  6 CseqFpknvdqdeFeeHVesH 26
                C+ +F      + +  H+ +H
  CDO68985.1 53 CGRRFRQ---ESNLKTHMTTH 70
                6666666...46677888888 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.8   1.4e+04      62      68 ..      33      39 ..      20      40 .. 0.70
   2 ?    6.7   0.2    0.0061        11       6      29 ..      47      70 ..      44      78 .. 0.87
   3 ?    3.0   0.1     0.088   1.6e+02      12      40 ..      92     120 ..      90     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.8
     FOXP-CC 62 qaMmaHL 68
                + M++HL
  CDO68985.1 33 RHMQSHL 39
                4577776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0061
     FOXP-CC  6 vCkWPgCekvledveeflkhlnse 29
                vC  P+C + + + +++  h+ ++
  CDO68985.1 47 VCTFPDCGRRFRQESNLKTHMTTH 70
                7*******************9875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.088
     FOXP-CC  12 CekvledveeflkhlnseHalddkstaql 40 
                 C + + d + +l+h + +H  + ks    
  CDO68985.1  92 CAACFRDGSMLLRHRKLNHGYKPKSKQPS 120
                 999999999**********9999987654 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.6    0.0068        12      13      24 ..      28      38 ..      27      38 .. 0.89
   2 ?    5.9   1.3    0.0062        11      14      25 ..      61      71 ..      58      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0068
   zf-H2C2_5 13 ksnLkRHlrrkH 24
                k++L+RH++  H
  CDO68985.1 28 KRDLRRHMQ-SH 38
                89******9.66 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0062
   zf-H2C2_5 14 snLkRHlrrkHt 25
                snLk H+  +Ht
  CDO68985.1 61 SNLKTHMT-THT 71
                9*******.**8 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.5    0.0015       2.7     756     823 ..     161     218 ..     116     252 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0015
        Rrn6 756 arrkrekrrrrkeklklasraeasssssssqssssksssssssqlpsssqvptlpd...fslsmqissSQv 823
                 a++      r ++++++++ ++  ++ss+s+++s + sss ss+++ s++vp+l +   +        S +
  CDO68985.1 161 AQTI-----RAARRAAKKPASRSLKASSRSNAVSTTPSSSGSSSPAYSAPVPSLTSsgsS--------SPA 218
                 3333.....444444445577788888888899999999999999999999999995542........222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3187.38
//
Query:       CDO68986.1  [L=118]
Description: hypothetical protein BN946_scf184762.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-19   68.7   9.4    6.9e-19   68.3   9.4    1.1  1  Got1      Got1/Sft2-like family


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   9.4   3.8e-23   6.9e-19       9     112 ..       2      92 ..       1      93 [. 0.97

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 3.8e-23
        Got1   9 llglpllflkprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsyiPggrsa 107
                 llg++l+f+     ++l++lGnilfl++++++iGp k++ +++++++l +t+++++++ll+++ +++       +++viv+++++l+++ +++P++ ++
  CDO68986.1   2 LLGVILFFD-----GALLALGNILFLSGLTLIIGPHKTFYFFARRQKLRGTACFIGGILLVFF-KWP-------FVGVIVETFGFLNLFGDFFPVILTF 87 
                 68999****.....99***********************************************.***.......************************* PP

        Got1 108 lkkvl 112
                 l++++
  CDO68986.1  88 LRQLP 92 
                 *9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 833.29
//
Query:       CDO68987.1  [L=501]
Description: hypothetical protein BN946_scf184762.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-56  190.2   0.0    5.4e-56  189.9   0.0    1.1  1  Pkinase         Protein kinase domain
    6.8e-38  130.4   0.0    9.1e-38  130.0   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    5.3e-07   29.2   0.0    8.2e-07   28.6   0.0    1.2  1  Kinase-like     Kinase-like
     0.0065   15.3   0.0     0.0095   14.8   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.012   15.6   0.2       0.41   10.5   0.0    2.8  3  APH             Phosphotransferase enzyme family
      0.037   13.0   0.0      0.058   12.3   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.0   1.8e-59   5.4e-56       3     264 .]     203     458 ..     201     458 .. 0.91

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 1.8e-59
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeak 101
                  +e+lG+G++G+V k+++k t+  +A+K+i+ e ++ k  + +++E+ il++   p+iv++y++f  ++ +y ++ey++ g+l++l      ++e+ + 
  CDO68987.1 203 LDEELGKGNYGTVKKVLHKPTKVAMAMKEIRLELDEAKL-NGIIMELDILHRAVAPEIVEFYGAFFIESCVYYCMEYMDAGSLDKLQG--DGVPEHVLA 298
                 6799*****************************999877.59*****************************************99985..58******* PP

                 HHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TT..SCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase 102 kiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl....ke..neyskkvDvWslGvilyelltg 193
                 +i+ ++++gl++l  + +iiHrD+Kp N+L+++kg++K++DFG++ +le+s  +++ +g + Y+APE +    ++    y+ ++DvWslG+ ++e+  g
  CDO68987.1 299 RITGSMVRGLKFLKdDLQIIHRDVKPTNVLMNRKGQVKLCDFGVSGQLEKSL-AKTNIGCQSYMAPERIrgesQNnlGTYTVSSDVWSLGLSMIEMALG 396
                 **************7788********************************98.****************8764223356899***************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 + p++     e++++ + ql++i++         + ++++s+  kd++ ++l+k p++R t +ell+hp+l
  CDO68987.1 397 HYPYP----PETYANVFAQLTAIVD-----GDPPELPEHFSDVSKDFVARCLHKIPERRATYAELLAHPFL 458
                 *****....5667778888443333.....3466788999*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   3.1e-41   9.1e-38       1     256 [.     201     453 ..     201     455 .. 0.91

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 3.1e-41
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  l+l+++lG+G++G+V +   k     ++v  a+K ++ e +e + + ++ e++i+++   p+iv+++g+   e+ ++  +ey++ G+L+k  +    +
   CDO68987.1 201 LQLDEELGKGNYGTVKKVLHK----PTKVAMAMKEIRLELDEAKLNGIIMELDILHRAVAPEIVEFYGAFFIESCVYYCMEYMDAGSLDKL-QG---D 290
                  6899************99988....899************************************************************875.44...4 PP

                  TSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE......EEHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk......ftsksDvW 189
                   +  + l +++  + +G+++L++  +++Hrd+   NvL++++ +vk++DfG++ ++    e + ++++  +  +mapE ++ ++      +t++sDvW
   CDO68987.1 291 GVPEHVLARITGSMVRGLKFLKDDlQIIHRDVKPTNVLMNRKGQVKLCDFGVSGQL----EKSLAKTNIGCQSYMAPERIRGESqnnlgtYTVSSDVW 384
                  799999***************97538******************************....4444556778899*******9988889999******** PP

                  HHHHHHHHHHTTSSGTTTTSHHHHHHHHH...HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkneevlekl...kegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  s G  ++E++  g+ pyp  + ++v+++l    +g   e pe+ ++  ++++ +c+++ pe+R+t++el+
   CDO68987.1 385 SLGLSMIEMAL-GHYPYPPETYANVFAQLtaiVDGDPPELPEHFSDVSKDFVARCLHKIPERRATYAELL 453
                  ********987.******9988888776633378999*****************************9986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.7e-10   8.2e-07     152     245 ..     303     395 ..     282     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.7e-10
  Kinase-like 152 qlirlaanLq.akglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpE.llgsrggytrknktkmthkldaWqlGlviyriwc 245
                   ++r    L+ +++++h +++++n+l+++kg+++l +f+   +  ++    +  ++++  pE ++g+     ++n  ++t + d+W lGl++  ++ 
   CDO68987.1 303 SMVRGLKFLKdDLQIIHRDVKPTNVLMNRKGQVKLCDFGVSGQLEKSLAKtNIGCQSYMAPErIRGE----SQNNLGTYTVSSDVWSLGLSMIEMAL 395
                  5555555565258*************************98877777766535667999888724455....456899**************998875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.2e-06    0.0095     315     388 ..     304     368 ..     283     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-06
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                      ++g++ L  + +i+HrD+   N+l++     ++ +  L D+ +  +l++    s a++ +G   +ma e ++g
      CDO68987.1 304 MVRGLKFLKDDLQIIHRDVKPTNVLMN-----RKGQVKLCDFGVSGQLEK----SLAKTNIGCQSYMAPERIRG 368
                     5889999999*****************.....778889999999999995....55678999999999988886 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   5.3e+02       5      85 ..     207     291 ..     205     311 .. 0.69
   2 ?   10.5   0.0   0.00014      0.41     163     187 ..     312     335 ..     291     344 .. 0.76
   3 ?    0.7   0.1      0.14   4.1e+02     110     161 ..     393     443 ..     351     495 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
                 E--.SSCEEEEEEETT-..-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE....EEEEEE----EE-SS....H CS
         APH   5 lsggasnrtylvttpag..ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigl....lfalieyvpgrsllr....k 85 
                 l+ g++  + +v ++ +   ++++ ++ +  ++++ ++  +l+ L++a v +Pe++ +        +    +++ +ey+++ sl+      
  CDO68987.1 207 LGKGNYGTVKKVLHKPTkvAMAMKEIRLELDEAKLNGIIMELDILHRA-V-APEIVEFYGAF----FiescVYYCMEYMDAGSLDKlqgdG 291
                 566666666666666643566677777778888888999999999999.5.99999964333....344569********99999844331 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00014
                 SS-EEEE-SS-SGGGEEEC..TTEE CS
         APH 163 elptvllHgDlhpgNllvdpddgrv 187
                  ++ +++H+D +p N+l++ ++g+v
  CDO68987.1 312 KDDLQIIHRDVKPTNVLMN-RKGQV 335
                 5789***************.88887 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.14
                 -STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH 110 paalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                 +a  + ++++++++++++ql +   +++++el++   ++ + + a+++   p
  CDO68987.1 393 MALGHYPYPPETYANVFAQLTAI-VDGDPPELPEHFSDVSKDFVARCLHKIP 443
                 55566666777777777777777.3666666666333444434444443333 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05     0.058     219     254 ..     308     343 ..     295     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
  Haspin_kinase 219 LyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                    L+     ++  HRd +  n+L++++++v l+d+ +s
     CDO68987.1 308 LKFLKDDLQIIHRDVKPTNVLMNRKGQVKLCDFGVS 343
                    56666788999**********************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3507.02
//
Query:       CDO68988.1  [L=306]
Description: hypothetical protein BN946_scf184762.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-22   78.9   0.0    6.9e-22   77.7   0.0    1.6  1  BAG          BAG domain
    7.5e-09   35.2   0.0    1.3e-08   34.4   0.0    1.4  1  ubiquitin    Ubiquitin family
  ------ inclusion threshold ------
       0.11   12.6   0.0        0.4   10.7   0.0    1.9  2  Ubiquitin_4  Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> BAG  BAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   1.1e-25   6.9e-22       1      74 [.     190     298 ..     190     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.1e-25
                 HHHHHHHHHHH.HHHHHHHHHHH....................................HHH..HHHHHHHHHHHHHHTCEESTH.HHHHHHHHHHHHH CS
         BAG   1 Ideilkevetllepeveafektv..................................kkekeylylsElLlklLlkLDsieiegd.eeaRekRKeavke 64 
                 I+  l++v+++l p+ve+f++++                                  + eke+l+l+ElLl+ Ll+LD+i++eg+ eeaR++RK avke
  CDO68988.1 190 IRTELDKVRNTLRPDVESFLAALspssaaaqvgpsptrtaaapkpasaaasgsrapaDLEKEHLRLGELLLQTLLRLDAINAEGEwEEARRERKGAVKE 288
                 67789************************************************999999**************************************** PP

                 HHHHHHHHHH CS
         BAG  65 vqkllkklDs 74 
                 vq+ll++lDs
  CDO68988.1 289 VQSLLDRLDS 298
                 *********7 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.2e-12   1.3e-08      16      68 ..     107     160 ..      92     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.2e-12
                 ETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEEE CS
   ubiquitin  16 eesdtveelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhlv 68 
                 +++ t+ +l + iae +++p ++++Li++G v+ +d+ +++ ygi++gs++ l 
  CDO68988.1 107 PPDATLGQLRHEIAEYTHLPEKSFKLIHAGAVMkDDNAPISAYGIKPGSKIALI 160
                 5899*****************************888999***********9885 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.58   3.5e+03      20      36 ..     109     125 ..      90     129 .. 0.71
   2 ?   10.7   0.0   6.7e-05       0.4      54      84 ..     128     158 ..     127     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.58
  Ubiquitin_4  20 natvkdLkkaierkvel 36 
                   at+ +L++ i + ++l
   CDO68988.1 109 DATLGQLRHEIAEYTHL 125
                  69999999999988876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.7e-05
  Ubiquitin_4  54 ktycLsfegekLkddkaklkeygirnksels 84 
                  k++ L+  g+ +kdd+a +++ygi+ +s+++
   CDO68988.1 128 KSFKLIHAGAVMKDDNAPISAYGIKPGSKIA 158
                  6899*********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2175.62
//
Query:       CDO68989.1  [L=89]
Description: hypothetical protein BN946_scf184762.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.061   12.9   1.8      0.075   12.6   1.8    1.1  1  DUF5527   Family of unknown function (DUF5527)


Domain annotation for each model (and alignments):
>> DUF5527  Family of unknown function (DUF5527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.8   4.2e-06     0.075      37      88 ..      22      73 ..       2      77 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.2e-06
     DUF5527 37 kadplpiiialvCiflllatflifvtlCkPaaldqsrsgpheCmPyhpedas 88
                 a  l i+ +l C+++    +l+f++     ++d  +++ + C P  p++ s
  CDO68989.1 22 WAPKLMIVAILTCMLITHILILVFLATHICLTVDVLKHALEHCDPLDPANDS 73
                344688999999*99999999999998888999*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 706.50
//
Query:       CDO68990.1  [L=323]
Description: hypothetical protein BN946_scf184762.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-09   37.3   0.0    2.5e-09   36.9   0.0    1.2  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.4e-13   2.5e-09      22     134 ..      23     138 ..      18     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.4e-13
  Retrotran_gag_2  22 elvkeektakevWdkLkelyekksaankltlrkklfslk.mkegesvadhinkleelvneLsalgvkiddedkvvllLasLPesyetfvtaies 114
                      ++v  + +ak++Wd Lk+++   ++a  + l+  + +l  m ++  + d +    + +++ s+ g  ++++ +vv +L++LP sy+t+ t + s
       CDO68990.1  23 KRVAASYSAKDMWDVLKKEFGTPDTAEAIGLLLSFSNLSpMMDTRPLCDQLGAYITCIQDASNGGMHFTESQQVVFILMKLPLSYSTLLTSLTS 116
                      7888999*****************************996699999************************************************* PP

  Retrotran_gag_2 115 ..seedltleevieklleeeer 134
                        + ++ t+e ++ k+l ee+ 
       CDO68990.1 117 shPLKNWTIEWIQGKVLAEESL 138
                      *******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2377.66
//
Query:       CDO68991.1  [L=226]
Description: hypothetical protein BN946_scf184762.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-15   55.1   0.0    1.5e-14   54.0   0.0    1.5  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    9.3e-13   48.1   0.0    2.3e-12   46.8   0.0    1.6  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
  ------ inclusion threshold ------
       0.04   14.2   0.1        0.1   12.9   0.0    1.7  2  RT_RNaseH    RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   2.6e-18   1.5e-14     124     222 .]      10      99 ..       3      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2.6e-18
                 TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 124 kgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvtl 222
                 +g++e+ ++p+ + +  + f++f+ne++  l      v +++Y  Dili+s+s ee+ +++++v ++l++ +l  + +K+++      ++ v+yLG++l
  CDO68991.1  10 YGFFEWLVMPFRLLNTLAAFQRFVNEVFAGLLD----VCVIVYLNDILIYSNSLEEHRQHVKEVLRRLRKFKLYAQVDKCEFH-----ATFVEYLGYIL 99 
                 689*****************************8....9*********************************************.....9*******975 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   3.8e-16   2.3e-12       2      49 ..     163     210 ..     162     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 3.8e-16
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqe 49 
                  ++ ++++f++lk+a+tsap+L+h +p+++++++tDaSd++i+++Ls +
   CDO68991.1 163 DQRCQDSFNALKKAFTSAPILHHWEPNRQITVKTDASDYAIAGTLSIT 210
                  689******************************************976 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   7.5e+03      63      79 ..      65      82 ..      58      89 .. 0.64
   2 ?   12.9   0.0   1.7e-05       0.1       2      23 ..     188     209 ..     187     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
                HHHHHHTS.--EEEE-SS CS
   RT_RNaseH 63 kfrhylqg.rkftvitDh 79
                +++++l++ rkf+++   
  CDO68991.1 65 HVKEVLRRlRKFKLYAQV 82
                566666666666666544 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.7e-05
                 TTS-EEEEEEECTEEEEEEEEE CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsq 23 
                 p+++++++tDAsd++i++ Ls 
  CDO68991.1 188 PNRQITVKTDASDYAIAGTLSI 209
                 899****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1535.75
//
Query:       CDO68992.1  [L=673]
Description: hypothetical protein BN946_scf184762.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-06   26.4   1.9    1.2e-05   25.5   0.2    2.4  3  Retrotrans_gag   Retrotransposon gag protein
    0.00028   21.5   0.0    0.00077   20.1   0.0    1.7  1  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.016   14.9   0.3      0.038   13.8   0.2    1.6  1  RVP_2            Retroviral aspartyl protease
      0.023   14.2   0.0       0.04   13.4   0.0    1.3  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
      0.073   12.9   0.0       0.15   12.0   0.0    1.5  1  DUF4939          Domain of unknown function (DUF4939)
       0.11   13.1   0.0       0.32   11.6   0.0    1.7  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
       0.14   11.7   0.0        0.3   10.6   0.0    1.5  1  Peptidase_A2B    Ty3 transposon peptidase
        3.3    6.3  10.9        4.9    5.7  10.9    1.2  1  MAP65_ASE1       Microtubule associated protein (MAP65/ASE1 f
        4.6    5.9   8.4        8.6    5.0   8.4    1.3  1  NPR3             Nitrogen Permease regulator of amino acid tr
          7    4.6   7.2        9.8    4.2   7.2    1.1  1  Hid1             High-temperature-induced dauer-formation pro
        9.9    4.9  10.3         15    4.2  10.3    1.3  1  Apt1             Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   7.5e-09   1.2e-05      38      94 ..      74     129 ..      43     131 .. 0.93
   2 ?   -2.7   0.0       4.5   7.3e+03      68      82 ..     147     162 ..     135     175 .. 0.62
   3 ?   -2.0   0.0       2.8   4.6e+03      53      69 ..     557     574 ..     556     575 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7.5e-09
  Retrotrans_gag  38 ktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekflaGL 94 
                       +l+ +++ q++++l +lr  +++ +++Y+t+f++l +q++  +  +a+  +f++GL
      CDO68992.1  74 ISYLKGMDSCQAKHDLENLRMaNNQRITKYITQFNRLTTQVR--WGRAALRYQFYKGL 129
                     67888889999*******************************..*************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.5
  Retrotrans_gag  68 trfktladqlde.vlt 82 
                     ++++ la+ ld+  ++
      CDO68992.1 147 EELRNLAQSLDHrYWE 162
                     3445555555554333 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.8
  Retrotrans_gag  53 lsslrQ.gtesvreYvtr 69 
                     + sl+Q +  ++reY+++
      CDO68992.1 557 IYSLSQvELDTLREYIEE 574
                     6689999999*****986 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.7e-07   0.00077      12      61 ..     363     411 ..     359     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.7e-07
  Asp_protease_2  12 fllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrldsl 61 
                     +l+D+G+s+++i++++++ +g+++++ + ++ +++ +g++   + r  +l
      CDO68992.1 363 ALVDSGSSHCFIDSDFVDHHGIQTSPVP-PTHLQLFDGTSNNVISRTSTL 411
                     79************************97.9999*****999888887765 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.3e-05     0.038      35      59 ..     363     387 ..     355     414 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
       RVP_2  35 vLfdsGasHsFiskafvsklklkve 59 
                  L dsG sH Fi   fv +++++++
  CDO68992.1 363 ALVDSGSSHCFIDSDFVDHHGIQTS 387
                 599*******************997 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05      0.04      14      95 ..     603     662 ..     595     669 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                 ....-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-E CS
       RVT_1  14 llsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltaf 95 
                 +l+vdy  lnk++ k         + +++p   +              l+  +ka++++k+Dl+ a++ v+ +  ++ +taf
  CDO68992.1 603 CLCVDYQGLNKITRK---------DRYPLPLVSDL-------------LDTPRKARIYTKIDLRHAYNLVRIAPGDEWKTAF 662
                 677899999****99.........99999999999.............8899*************************99998 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.1e-05      0.15      26      74 ..      31      80 ..       8     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.1e-05
     DUF4939 26 ipfpetfd.GdtdrlpefivqtlsymlvdektfssdalkvtflitrltGe 74
                +  p++fd  d  +l  f  q       + ++f++d+ kvt+ i+ l+G 
  CDO68992.1 31 VREPDQFDrSDPSKLRSFFTQLELVFKAHPRMFDTDKKKVTYAISYLKGM 80
                6669999845889*********9999999*******************96 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002      0.32      10      58 ..     361     408 ..     358     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
                      EEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEE CS
  gag-asp_proteas  10 vkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrl 58 
                      + +lvD+G s+ +i +++++  g+++++ + + +++  +g+      r 
       CDO68992.1 361 FCALVDSGSSHCFIDSDFVDHHGIQTSPVP-PTHLQLFDGTSNNVISRT 408
                      789************************975.889999888876555554 PP

>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019       0.3      48      98 ..     363     413 ..     356     422 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
  Peptidase_A2B  48 tlfdsgsptsfirrdivellkleiyetpplrfrgfvatksavtseavtldl 98 
                    +l dsgs   fi  d v+   +++   pp  ++ f  t   v s + tl +
     CDO68992.1 363 ALVDSGSSHCFIDSDFVDHHGIQTSPVPPTHLQLFDGTSNNVISRTSTLPI 413
                    699*****************************************9999866 PP

>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.9     0.003       4.9     410     537 ..     159     281 ..     146     321 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.003
                 HHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHCXXXXXXXXXXXXXXX.XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXX CS
  MAP65_ASE1 410 eqweeleekyqererqksarklkkasqteeeilkgskmrtpskrrvtap.kTPsklksmskvsssssslkktpsnskslsankn..talstanerkrkl 505
                  +we++   +q+r   +s+r  k++s+t+ + + +sk+ + s+r ++   +TPs  +s s+++++ss+  ktps++      ++  +  + ++e+++++
  CDO68992.1 159 RYWERKA--EQAR---ESSRGSKSSSRTSGKSTSESKSSS-SSRPSQSSgSTPS--TSLSATPRTSSGTPKTPSKQATKPYADKlgKDGKLTQEEHQRH 249
                 3555555..4555...445555677888877777777444.444444445***9..6888999999998888887655443333356677777777777 PP

                 XXXXXXXXXXX.....XXXXXX............ CS
  MAP65_ASE1 506 psanvisknsa..agrakrsllarlnskkasasa 537
                   +n++       +g+++    ++ n+  + ++a
  CDO68992.1 250 FANNLCLF--CggSGHVSTVCPKKTNTPAKGRAA 281
                 76665544..122344444333333333333333 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.4    0.0053       8.6      42     131 ..     159     256 ..     153     258 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0053
        NPR3  42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesek............eeeekedkkkn 128
                   w+++ ++ ++s+r+++s+s+++ +++s++ks+sss+ ++    +s ++ ++s +++ ++++ + ++ ++++++             +ee++ +  +n
  CDO68992.1 159 RYWERKAEQARESSRGSKSSSRTSGKSTSESKSSSSSRPSQ----SSGSTPSTSLSATPRTSSGTPKTPSKQATKPyadklgkdgkltQEEHQRHFANN 253
                 57999988888888887765555444444333333333332....233333333333333333332332222222234457777777766666666666 PP

        NPR3 129 ltm 131
                 l  
  CDO68992.1 254 LCL 256
                 655 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.2     0.006       9.8     567     657 ..     145     252 ..     139     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.006
        Hid1 567 vfealrnltlesaseeiersnesarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavs......... 656
                  +e lrnl  +  + + er++e+ar  s  +++++++s +s++e+++s+s++ps+s+ ++  +sl++t+ +s+ + ++ ++++ ++ a +         
  CDO68992.1 145 SLEELRNLAQSLDHRYWERKAEQARESSRGSKSSSRTSGKSTSESKSSSSSRPSQSSGSTPSTSLSATPRTSSGTPKTPSKQATKPYADKlgkdgkltq 243
                 568899999999999999999999999999999999999999999999999999999999999999999999999887777777766555554444444 PP

        Hid1 657 ........q 657
                         +
  CDO68992.1 244 eehqrhfaN 252
                 444444440 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  10.3    0.0095        15     316     372 ..     167     226 ..     122     305 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0095
        Apt1 316 eddesdeesessssss..ssssssassssssssrsss.lelrlkptsstssssssessss 372
                 +  es++ s+sss+ s  s+s+s++ssss+ s++s+s  + +l+ t +tss ++++ s++
  CDO68992.1 167 QARESSRGSKSSSRTSgkSTSESKSSSSSRPSQSSGStPSTSLSATPRTSSGTPKTPSKQ 226
                 111111111111111111111111111111111111101111112222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 4461.69
//
Query:       CDO68993.1  [L=228]
Description: hypothetical protein BN946_scf184762.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1926.49
//
Query:       CDO68994.1  [L=110]
Description: hypothetical protein BN946_scf184834.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 812.33
//
Query:       CDO68995.1  [L=603]
Description: hypothetical protein BN946_scf184834.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-30  104.6   1.3    5.7e-30  104.6   1.3    2.6  3  CBF       CBF/Mak21 family


Domain annotation for each model (and alignments):
>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.11   1.9e+03      10      35 ..     130     158 ..      66     183 .. 0.63
   2 ?   -1.3   0.0      0.11     2e+03      88     121 ..     236     284 ..     221     336 .. 0.61
   3 !  104.6   1.3   3.2e-34   5.7e-30       2     170 .]     396     544 ..     395     544 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
         CBF  10 qllskqkqsel....lsasdRFyraLYrkL 35 
                 +l ++  +s+l     +++  F++  +rk+
  CDO68995.1 130 SLQKHL-SSALtrtgNNTQPQFHSSHFRKI 158
                 333332.11112223223333444444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.11
         CBF  88 llallsellkhppklkalle...............ekfkdvkeeeeeek 121
                 ll +l++l++ p k ++l +               +  +d ++eee ++
  CDO68995.1 236 LLSILERLTTFPTKASELNSwwveefgtkppkpkrSANEDDDDEEEADA 284
                 5667777777443333333344477777777665422222222222222 PP

  == domain 3  score: 104.6 bits;  conditional E-value: 3.2e-34
         CBF   2 vqaLvllfqllskqkqsel.lsasdRFyraLYrkLldpelltsskralllnlly.....kalkadkpvkrvaAFvKRllqlalhappsfalgllallse 94 
                 ++aL+ lf+l+++    +l ++    Fy++LY  L d ++l+ ++ra++++l+      ++l    p+++va+FvKRl +l+l+app+ +++l+ + ++
  CDO68995.1 396 LLALNALFTLMKEY---NLdYPS---FYTRLYGFL-DRDVLHLKHRARFFRLTElflssTHL----PATLVASFVKRLSRLSLSAPPAAVVMLIPFTYN 483
                 68***********8...566888...*********.******************88888888....********************************* PP

         CBF  95 llkhppklkalleekfkdvkeeeeeekkeekkkskaesgvYdptkrdpeysnaeasslwElsllakhfhPtValfA 170
                 +l+ +p l+ +++      ++ee   +         + + +d+++ +p  +na +sslwEl   ++h+h +V+++A
  CDO68995.1 484 MLRRHPALMVMIH------RNEE--LT-------GVDCDGFDAREGNPTLTNALESSLWELYSHRRHYHAAVSTLA 544
                 ***888*******......5553..22.......345799*********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4205.65
//
Query:       CDO68996.1  [L=846]
Description: hypothetical protein BN946_scf184834.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-63  213.4   0.1    3.5e-63  213.4   0.1    3.6  4  Myb_Cef          pre-mRNA splicing factor component
    3.2e-22   78.4   6.0    9.5e-11   41.7   1.3    2.9  2  Myb_DNA-binding  Myb-like DNA-binding domain
      2e-19   69.6   6.9    1.3e-12   47.8   3.1    2.8  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0029   17.4   1.2     0.0049   16.6   1.2    1.3  1  RTX              N-terminal domain in RTX protein
  ------ inclusion threshold ------
       0.57   10.8   3.9       0.65   10.6   0.1    3.1  2  DUF3499          Protein of unknown function (DUF3499)


Domain annotation for each model (and alignments):
>> Myb_Cef  pre-mRNA splicing factor component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.1      0.46   1.6e+03      82     132 ..     155     198 ..     143     211 .. 0.56
   2 ?   -5.5   3.8         5   1.8e+04      84      94 ..     263     274 ..     254     311 .. 0.42
   3 !  213.4   0.1   9.6e-67   3.5e-63       1     235 [.     421     649 ..     421     652 .. 0.94
   4 ?   -6.4   5.0         5   1.8e+04      95     117 ..     791     815 ..     777     839 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.46
     Myb_Cef  82 vpeeeeeee.eeeeeeeekveeDaadidarkkaereaeeekelkrrsqvvqr 132
                 ++e+e+e + +e ++  ++++  +a ++ar+++ +ea++         v+q+
  CDO68996.1 155 MDEDEKE-MlSEARARLANTQGKKAKRKARERQLEEARR-------LAVLQK 198
                 4555543.3223222334444444445555554444444.......444443 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 5
     Myb_Cef  84 eeeeeee.eeee 94 
                 eeee e+ + ++
  CDO68996.1 263 EEEEAERrKRQR 274
                 333321111111 PP

  == domain 3  score: 213.4 bits;  conditional E-value: 9.6e-67
     Myb_Cef   1 TpntvlatPfrta.kaegaTprrg.vatPl...rTplRDkLniNeees.llvgetpreekqrqkeakeqLrsgLasLPkPkndyeivvpeeeeeeeeee 93 
                 Tpn+ latP++ +  + gaTpr++ +atP+   rTp+RD L++N+e++ ++vg+tpre++ + +++k++L+++++sLPkP+n++e+ vpe+eee   ++
  CDO68996.1 421 TPNP-LATPLHAGgVGPGATPRTDvAATPGtamRTPIRDGLRLNQENGfSTVGDTPREQRLHASSTKNALKAAFMSLPKPENNFELLVPEDEEE---DS 515
                 9***.******95599********669999899***********************************************************86...44 PP

     Myb_Cef  94 eeeeekveeDaadidarkkaereaeeekelkrrsqvvqrnLPRPaevneevlreslsspaneeapltdlqkaeelIkkEmltllhhDalknPlkskkga 192
                  ++   +eeDaa++dar k+ re+ee+k+l+rrsq+vqr+LPRPa v+ ++l+++l+ +++e    +dl  a +l++ E++ ll hD++++Pl   +g+
  CDO68996.1 516 AAAGPISEEDAAERDARLKRLREEEERKALARRSQAVQRGLPRPAVVDISRLMQNLTVDDDE---SSDLGAAAKLVHAEIADLLFHDSIAHPL---PGT 608
                 447899***********************************************999996666...69**************************...888 PP

     Myb_Cef 193 aqheayleaspyeefedeeleaAkellkeEmevvkgemghgel 235
                     + +++s y+ + d+ l+ Ak++++eE+++  g +g++e+
  CDO68996.1 609 IY--PGGTRSAYQIPPDDALAVAKSMVHEELANSLGYPGANEE 649
                 87..***********************************9987 PP

  == domain 4  score: -6.4 bits;  conditional E-value: 5
     Myb_Cef  95 e..eeekveeDaadidarkkaerea 117
                 +  +e   e Da  ++a  + ++ +
  CDO68996.1 791 RrlQERYAELDAERREALSRVAALE 815
                 1234444444444444444433333 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   1.3   2.6e-14   9.5e-11       2      46 .]       9      54 ..       8      54 .. 0.96
   2 !   38.2   0.2   3.2e-13   1.2e-09       2      46 .]      61     104 ..      60     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 2.6e-14
                     SSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 gkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrnyl 46
                     g W   Ede L  a++k+G n+W++I++ l  +t+kqc+ rw+ +l
       CDO68996.1  9 GVWKNTEDEVLKAAIAKYGkNQWARISSLLVRKTPKQCKARWYEWL 54
                     78*****************999*********************997 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 3.2e-13
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                       +W++eEde+Ll + k++  +W++Ia  + gRt+ qc +r++++l
       CDO68996.1  61 TEWSKEEDEKLLHLAKLMPTQWRTIAPIV-GRTATQCLERYQKLL 104
                      68***************************.6************97 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   3.1   3.5e-16   1.3e-12       1      60 []      11      71 ..      11      71 .. 0.96
   2 !   32.4   0.1   2.2e-11     8e-08       1      44 [.      63     104 ..      63     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3.5e-16
  Myb_DNA-bind_6  1 WteeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeedirL 60
                    W   Ede L     kyg n+W  I++ l r+tpkqc+ rw + L+p+i++++wskeed++L
      CDO68996.1 11 WKNTEDEVLKAAIAKYGkNQWARISSLLVRKTPKQCKARWYEWLDPSIKKTEWSKEEDEKL 71
                    8999************9569********88****************************998 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2.2e-11
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44 
                     W++eEde+Ll l + +  +W++Ia + + Rt++qc +r+++ L 
      CDO68996.1  63 WSKEEDEKLLHLAKLMPTQWRTIAPIVG-RTATQCLERYQK-LL 104
                     ****************************.***********9.53 PP

>> RTX  N-terminal domain in RTX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.2   1.4e-06    0.0049     125     211 ..     703     790 ..     698     815 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
         RTX 125 ailekvAeklaekIkeeekekggkayFensydarhealledllkllaelqk.elnaervvaitqqrldasileLAaisrngdelksak 211
                 a le+  + +a+  ++ +k+++  +    +y+ar +al++++++ +aelqk +l++e+ + ++  ++    l LAa+  + ++l++ +
  CDO68996.1 703 AQLEAYRDAMAKEASKAGKTEKKLNVLLGGYQARAAALAKRTTDAFAELQKvKLDYESFSKLKANEMAMGPLRLAALKEEVEKLEQRE 790
                 5677777888888888899999999999*********************98789****************************997654 PP

>> DUF3499  Protein of unknown function (DUF3499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.3       2.9     1e+04      71     103 ..     156     188 ..     144     204 .. 0.46
   2 ?   10.6   0.1   0.00018      0.65      30      72 ..     225     267 ..     223     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.9
     DUF3499  71 deddlvALAdavreaaeeereeeaepepaeeak 103
                 ded+ + L +a    a+++ +++++++++++ +
  CDO68996.1 156 DEDEKEMLSEARARLANTQGKKAKRKARERQLE 188
                 455555555554444433333333322222222 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00018
     DUF3499  30 PLataaephsyDLCeeHaerltaPrGWelvrleeelaeaepde 72 
                 P +++  p  yD  +e a+ +taP G +l rle++ +++e+++
  CDO68996.1 225 PFEKKPAPGFYDTSDEQARATTAPVGQTLRRLENKRKPEEEEA 267
                 6778889*************************98776555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1700  (0.0948185); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 5497.03
//
Query:       CDO68997.1  [L=333]
Description: hypothetical protein BN946_scf184834.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.071   12.8   0.1       0.11   12.2   0.1    1.4  1  TPR_21    Tetratricopeptide repeat-like domain


Domain annotation for each model (and alignments):
>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.2e-06      0.11      12      56 ..      70     113 ..      66     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.2e-06
      TPR_21  12 lvgvvlalvglaGwqgwqdy.qeeqaeeAsalYqqlqeaveakdaa 56 
                 ++gvvlal+ ++Gw +w +  ++++a++  ++   l+  v+++ ++
  CDO68997.1  70 AAGVVLALIVVVGWAWWGKCiKRKKAKQIKEALAVLE--VRENTRK 113
                 689**************98624555555555555443..3333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2498.80
//
Query:       CDO68998.1  [L=181]
Description: hypothetical protein BN946_scf184834.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-37  127.6   3.6    5.5e-37  127.3   3.6    1.1  1  DUF1690       Protein of Unknown function (DUF1690)
  ------ inclusion threshold ------
      0.011   15.9   0.0       0.02   15.1   0.0    1.5  1  DUF3220       Protein of unknown function (DUF3120)
      0.035   14.3   4.9        2.3    8.4   1.8    2.2  2  Metal_resist  Heavy-metal resistance
        1.4    9.8   5.0         24    5.8   0.2    2.4  2  Histone_HNS   H-NS histone family
        2.8    8.5  12.5        9.9    6.7  11.5    2.0  2  APG6_N        Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   3.6   1.5e-40   5.5e-37       1     139 []      15     169 ..      15     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 1.5e-40
     DUF1690   1 fkpetpiqfSqslvsqLessketda...sraqalekliqerVaeeLkkLraeeeetlkkfeeklekellkde.............adakdelsskalne 83 
                 f+p+t ++fS+++v+qL++++ ++     r+ +++++i++r+++eL++L++eee++++++e++leke+l++e             ++ ++ +ss+al+ 
  CDO68998.1  15 FTPDTSLHFSEDVVNQLADHQASPEiphNRQLTIDAHIRARIESELNRLHQEEERVREEIERALEKENLDRErgmageesasddsTSVGSVKSSAALQG 113
                 89***************999888877779****************************************************9988778899******** PP

     DUF1690  84 kieeLrkkleefkkkeeeklpeeveeareevveClrenkgkpLdCweeveeFkkev 139
                 ++eeLr+k+e+ ++++++++ ++v+++ +evv+Cl+++ ++pLdCw+ veeFk++v
  CDO68998.1 114 DLEELRQKIEKYHARQSSEELADVRAKGDEVVSCLKAHTTTPLDCWKAVEEFKASV 169
                 *****************************************************987 PP

>> DUF3220  Protein of unknown function (DUF3120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   5.5e-06      0.02      24      69 ..     106     151 ..      90     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.5e-06
     DUF3220  24 agsmalqgdvkvwmqnledlhtrrpdefaarlqqstdalyshleaq 69 
                   s alqgd++   q++e  h+r+  e  a ++   d + s l+a+
  CDO68998.1 106 KSSAALQGDLEELRQKIEKYHARQSSEELADVRAKGDEVVSCLKAH 151
                 5689**********************************99999886 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.8   0.00063       2.3      51      89 ..      48      87 ..      31      99 .. 0.73
   2 ?    7.0   0.1    0.0018       6.4      49     107 ..     116     175 ..     107     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00063
                  HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHCCSSSSHHH CS
  Metal_resist 51 lraalrdha.relralrrelraarrelaallaaepfDaaa 89
                   +a  r++   el  l++e +  r+e +++l +e++D+++
    CDO68998.1 48 IDAHIRARIeSELNRLHQEEERVREEIERALEKENLDRER 87
                  5555555554677778888888888888888888888875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0018
                   HHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  49 aelr.aalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraq 107
                   +elr ++++ har+ +++ ++ ra+ +e+++ l a ++ +    +a++e  a+ a+++++
    CDO68998.1 116 EELRqKIEKYHARQSSEELADVRAKGDEVVSCLKAHTTTPLDCWKAVEEFKASVAQVEQR 175
                   445405666677***********************9999999999999999998888887 PP

>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.8    0.0069        25       8      52 ..      54      98 ..      47     109 .. 0.71
   2 ?    5.8   0.2    0.0068        24       6      31 ..     115     140 ..     110     179 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0069
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SSS-----EEEE CS
  Histone_HNS  8 elekqeealeaeerkealaeirelaaeyGltleelaaeakkakkk 52
                 ++ + e  +  +e +++++ei++++++++l+ e   a  ++a+  
   CDO68998.1 54 ARIESELNRLHQEEERVREEIERALEKENLDRERGMAGEESASDD 98
                 444444446788889999********9999998877766665554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0068
                  XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Histone_HNS   6 ieelekqeealeaeerkealaeirel 31 
                  +eel++++e+  a++ +e la++r++
   CDO68998.1 115 LEELRQKIEKYHARQSSEELADVRAK 140
                  45555555555555555555554443 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.5    0.0028       9.9      45     125 ..      49     128 ..      25     133 .. 0.82
   2 ?    3.4   0.7     0.028     1e+02      32      86 ..     115     164 ..      90     180 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0028
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                 + + ++++e el +l++eee+  ee++++  e+e+l++e+  + ee++  +      +++  +lq +l+el ++ ++  a+
  CDO68998.1  49 DAHIRARIESELNRLHQEEERVREEIERAL-EKENLDRERGMAGEESASDDSTSVGSVKSSAALQGDLEELRQKIEKYHAR 128
                 455568899*****************9975.7899*********************************9999998887776 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.028
      APG6_N  32 lkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaa 86 
                 l++l+++ ++        +++ eel++++++ +e ++ Lk+  ++  +  +++++
  CDO68998.1 115 LEELRQKIEK-----YHARQSSEELADVRAKGDEVVSCLKAHTTTPLDCWKAVEE 164
                 3444444222.....2334455555555555555555555555554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1515  (0.0845); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1314.90
//
Query:       CDO68999.1  [L=447]
Description: hypothetical protein BN946_scf184834.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-17   61.4   0.0    1.9e-16   60.3   0.0    1.5  1  HA2          Helicase associated domain (HA2)
    2.7e-11   43.8   0.0    5.8e-11   42.7   0.0    1.5  1  Helicase_C   Helicase conserved C-terminal domain
    2.3e-09   37.5   0.0      6e-09   36.1   0.0    1.8  2  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
      0.001   18.9   0.0     0.0021   17.9   0.0    1.4  1  DEAD         DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   4.2e-20   1.9e-16       1     108 []     302     391 ..     302     391 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.2e-20
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 Ale Lv+ g +de+g+lT +G+k ae P+++ +a+mL a+ ++  +c +e++ti+A+ + +++f+ ++ ++   +     + +++++ +e+        
  CDO68999.1 302 ALEGLVHAGMIDEDGRLTVIGEKVAECPVEVNIARMLFASKDY--KCGEEILTIAAMTTIQDVFVIPEGAAGALA-----ELERRKFTAEE-------- 385
                 7899************************************777..**********************98764433.....24444444444........ PP

         HA2 100 daegDhltl 108
                    gDhltl
  CDO68999.1 386 ---GDHLTL 391
                 ...999986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.3e-14   5.8e-11      11      94 ..     163     255 ..     152     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.3e-14
                 HHTTTTSEEEEEESSHHHHHH.HHHH........HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C  11 kleeeggkilifvntidrlek.vkll........lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp 94 
                 +l++ +g+il+f+  +d++++ +++l        ++ k ++ ++lh+ l+++e+++++e   +g ++v++at++ae +++i+++++V++ ++ 
  CDO68999.1 163 HLQQTTGDILVFLSGRDEIDRcLEILsellptlpRNAKRLQLLALHAGLTTDEQLRVFEPTERGWRKVVVATNIAEASVTIDGIKYVVDSGFV 255
                 678999***********9998855554445775544449*************************************************99876 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.3   1.5e+04      38      55 ..      38      50 ..      19      66 .. 0.69
   2 !   36.1   0.0   1.3e-12     6e-09      22      75 ..     394     447 .]     352     447 .] 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.3
                 STTTTT...TSSSEEEEE CS
  OB_NTP_bind 38 Svlaknekekepewvvyt 55
                 S  a     ++ +wv yt
   CDO68999.1 38 SQAA-----SPQKWVGYT 50
                 3333.....677788776 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 1.3e-12
                  C..EEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHH CS
  OB_NTP_bind  22 d..yktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpaw 75 
                  d  y+ +r++t  ++hp Svl+   ++ ++ wv+++e+ et+k+ +r lt i+p+w
   CDO68999.1 394 DgtYRAVRGDTVLHVHPHSVLFT--RKPRSGWVIFHEMEETKKTQIRILTEIEPDW 447
                  145999999*************7..667788***********************99 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.6e-07    0.0021      96     170 ..      60     127 ..      45     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.6e-07
                 TTCSEEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 ++++i+++t g+l++  l +    ls+ +++ +DEa++ +   + d +  +l++++++  +     ++iv SATl 
  CDO68999.1  60 ERTRILYMTDGMLFReTLIDPL--LSRYSVIMIDEAHERSI--YTDLLLGVLKKIRRKRPS----LRIIVSSATLD 127
                 4599**********93334444..*************9776..89*********9655444....44*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 3007.99
//
Query:       CDO69000.1  [L=291]
Description: hypothetical protein BN946_scf184834.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-81  273.5   6.3    3.7e-81  273.3   6.3    1.1  1  DUF572    Family of unknown function (DUF572)
  ------ inclusion threshold ------
      0.018   15.0   0.8       0.69    9.9   0.1    2.3  2  zf-FCS    MYM-type Zinc finger with FCS sequence motif


Domain annotation for each model (and alignments):
>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.3   6.3   4.1e-85   3.7e-81       1     222 [.       9     247 ..       9     291 .] 0.71

  Alignments for each domain:
  == domain 1  score: 273.3 bits;  conditional E-value: 4.1e-85
      DUF572   1 kYyPPDfdpskipalrekarlknrqlvvRlmaPfnmrCktCgeyIykGvkFNarKekVgnetYlgipIfrFyikCtrClneitfkTDPkntdYvveeGa 99 
                 kY PPDfdps ip  r++++ kn q vvRlmaPf+mrC+tCgeyIykG+kFNarKe+V++e+Y+gi+IfrFyikCt C++eitfkTDPkntdY+ e+Ga
  CDO69000.1   9 KYFPPDFDPSLIP--RRRQP-KNSQQVVRLMAPFSMRCNTCGEYIYKGKKFNARKETVEGEDYYGIKIFRFYIKCTLCSAEITFKTDPKNTDYAAEHGA 104
                 9************..*****.****************************************************************************** PP

      DUF572 100 tRnfkaekleeeeakreekekeeeeaedamkklEkrtkdskkemealesLeeLqelnqrqakvdfdanlelrk.....efreekkereeeeedeealke 193
                 +Rnf+++++e+  ++++  +k+eee++++mk+lE+rt dsk+em++l +L++++  n+r ++++ +a l +r      e++e+++++ +eeede++++e
  CDO69000.1 105 SRNFEPWREEKAVEEEDRLAKLEEEENNPMKALENRTVDSKREMDILDALQDIRARNARIERIGQSADLLERIhmeeiESEEDRERKLAEEEDEKLVRE 203
                 ****9999666665666777778889**************************************99998888734434445666666666889999997 PP

      DUF572 194 ki........slekikllpe......deedekkaklle.gkte.........s 222
                  +                         +++  + + ++ ++ +         s
  CDO69000.1 204 VFakvpasatP--------SssgagpSDDSTATPEVITvKR-KagtqepdlqS 247
                 77433332210........1222221222222223333111.12233332221 PP

>> zf-FCS  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   7.7e-05      0.69       5      20 ..      42      57 ..      40      65 .. 0.85
   2 ?    3.3   0.1    0.0089        80       5      18 ..      79      92 ..      78     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.7e-05
      zf-FCS  5 rCwfCkkyikgkpeft 20
                rC++C++yi+ +++f+
  CDO69000.1 42 RCNTCGEYIYKGKKFN 57
                8********9999875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0089
      zf-FCS  5 rCwfCkkyikgkpe 18
                +C+ C+ +i++k++
  CDO69000.1 79 KCTLCSAEITFKTD 92
                7**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1990.38
//
Query:       CDO69001.1  [L=147]
Description: hypothetical protein BN946_scf184834.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1106.21
//
Query:       CDO69002.1  [L=182]
Description: hypothetical protein BN946_scf184834.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-44  151.5   0.0    1.3e-44  151.2   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00056   19.6   0.0    0.00068   19.3   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
     0.0011   19.2   0.0     0.0014   18.9   0.0    1.3  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   2.2e-48   1.3e-44       1     138 [.      35     171 ..      35     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 2.2e-48
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltle 98 
                 rl +el++l+ ++++gisa + +d nlf w ++i+gp++t+Y+g  Fk+++ fp++YP++pP +kf +++fHPnvd + G +cldiL+++ Ws++++++
  CDO69002.1  35 RLSNELMTLMMSSSPGISAFPRSDANLFDWVGTIEGPAGTVYAGLKFKITIVFPPNYPMSPPAIKFDSPCFHPNVDiTGGGICLDILQDK-WSAVYSVQ 132
                 7899************************************************************************999*********55.******** PP

                 HHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  99 svllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 ++lls+qsLl epn+ spln +aa+ + + +e++k++v +
  CDO69002.1 133 TILLSLQSLLGEPNNASPLNPDAAAIWDS-PERFKEQVMK 171
                 ***************************85.5579888865 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.1e-07   0.00068      35     107 ..      78     145 ..      51     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-07
   Prok-E2_B  35 ggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.e 107
                 g  +++++v+p+++p +ppa+    p      p +   gg +Cl       d+w +  sv+ +l +lq +L   
  CDO69002.1  78 GLKFKITIVFPPNYPMSPPAIKFDSPC---FHPNVDITGGGICL---DILQDKWSAVYSVQTILLSLQSLLGeP 145
                 6789**********************9...789999999*****...8999*************9999999753 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.3e-07    0.0014      53      79 ..      79     110 ..      32     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-07
                 EEEEEEEEE-SSTTSS--EEEEEECC.....S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
         RWD  53 pslkleiklpeeYPeeaPiislsste.....n 79 
                  ++k++i +p++YP ++P i++ s++     +
  CDO69002.1  79 LKFKITIVFPPNYPMSPPAIKFDSPCfhpnvD 110
                 6899*********************9555331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1295.82
//
Query:       CDO69003.1  [L=676]
Description: hypothetical protein BN946_scf184834.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-74  252.1   0.0    1.2e-74  251.8   0.0    1.1  1  DUF3684   Protein of unknown function (DUF3684)


Domain annotation for each model (and alignments):
>> DUF3684  Protein of unknown function (DUF3684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.8   0.0   6.8e-79   1.2e-74     866    1098 .]       2     229 ..       1     229 [. 0.94

  Alignments for each domain:
  == domain 1  score: 251.8 bits;  conditional E-value: 6.8e-79
     DUF3684  866 kivPvkkkkkeeekekkvrlvaPsqcylgeesst..ykkifdfvdFgseAnaFLlacGsksePtkeeiAellvkeparllellqspekYlklLrklA 960 
                  ++vPvk ++        +r+++P+qcy++ es++  ++k+f+fvdFg++AnaFL+acG+k+eP++ee++++l+++p+r++el++++e+Yl++Lr++A
  CDO69003.1    2 AFVPVKLSN------GAIRHLQPTQCYFKGESQAqfHSKLFTFVDFGTTANAFLSACGVKHEPSVEEVTKILLENPRRFYELAEGRENYLTELRNIA 92  
                  799997666......58***********99888889************************************************************* PP

     DUF3684  961 enlselkkdkellkkmkkspfLlaskeikskkkkekkekkeaeddeeedeeeeikeyqLakasdivivDdvnsyrlFkesllaaPqedlLEefylaL 1057
                   n + ++  + +++++k++p Ll+s+++++ + +e+k kk  + + e +ee+++ +y+L ++++iv++Dd+n+y+lF++ +++aPqedlLE+fy++L
  CDO69003.1   93 INCRLIS--SGTMARLKRAPALLGSRRVRKDNLTERKLKKGDDPAGELEEEDWEYQYDLLTPDKIVVADDTNAYQLFGDVVFTAPQEDLLEAFYMEL 187 
                  *******..*******************777777777777777788999************************************************ PP

     DUF3684 1058 GakrLsslvkeelrigaelkd.qkkaaklrklvlERlklFLh 1098
                  G +rLs lv+e++++ + l   +++aa++r+l+lERl+lFLh
  CDO69003.1  188 GCRRLSGLVREDYQTRNPLVGpDTRAARIRALILERLPLFLH 229 
                  ***************9997666*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4341.20
//
Query:       CDO69004.1  [L=851]
Description: hypothetical protein BN946_scf184834.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-252  839.5   0.0   2.5e-251  836.9   0.0    1.8  1  DUF3684   Protein of unknown function (DUF3684)


Domain annotation for each model (and alignments):
>> DUF3684  Protein of unknown function (DUF3684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  836.9   0.0  1.4e-255  2.5e-251       1     788 [.      62     846 ..      62     848 .. 0.96

  Alignments for each domain:
  == domain 1  score: 836.9 bits;  conditional E-value: 1.4e-255
     DUF3684   1 LtFva.lesielylDdwkllkLkKklspskevsiprdletktkeglmkvtsveresvqidaevmkvvewkpkeasssekkkkkseaasasakeaaslrs 98 
                 +tF++ l +++++lD+ +l +L+K  +++k+v ip++l+++++ ++m+v++++ ++++i+aevm++v+     ++ +ek+++k+e  +    +a s  +
  CDO69004.1  62 ITFMRhLLDVSVFLDGNRLSRLTKAPGIPKAVGIPKGLKPSSPLNTMQVAGINVTPLSIKAEVMQWVY-----MAGTEKPQPKKEPPK---PAAGSGGG 152
                 7*******************************************************************.....788999888887774...555899** PP

     DUF3684  99 ffsrlltssssssakkkaakeekaeqeeiaedltelstasifLrittasvkvsvsksfaaeLeratkKppPkktklailtsskdeadaskkedeaskka 197
                 ffs+ll+s++ s+++++a +++++ ++ ++ d+ ++ +++++L+i++a+v v++++++ +eL+r+tkK+pP+++k+++++++k+e+dask+ede++ ++
  CDO69004.1 153 FFSSLLSSFTGSNSPARAITPTPPPNPGPQIDPRTVVESNVVLSIFSADVVVRLDQKMISELNRSTKKNPPTRMKYELIYTGKAEYDASKSEDEKQGRT 251
                 *************************************************************************************************** PP

     DUF3684 198 adsiFasvlpskkeq..grifiGfptaqTTGlgahisApsvIPTVEResiDLnaryvrtWNkelLrvaGilaRiayeaEmaeikeklkkaaekskksk. 293
                 ++s+F++++++ ++   ++ifiG++t qTTG+g+h+sA ++IPTVEResiDL++r+v++WNkelL+++G+l+R aye Em++i++ +++aa+ ++ s+ 
  CDO69004.1 252 SGSVFQGLRADIEGLgqAKIFIGHATGQTTGIGGHMSA-RFIPTVERESIDLVDRNVAVWNKELLYIGGFLSRSAYEIEMEQIQQLWNQAASVARPSEg 349
                 ************976669********************.**************************************************9988855556 PP

     DUF3684 294 .ekediekllpealhilkfFtfreStPssevsqlieeaFftcs.........kkasievlStrGvlsskkvRlaseelskFlkeiPvlpeelveeakef 382
                  + + +e+l ++++h+lkfFtf+ StPss vs l+e+aFf+c+          ++ ++++St+Gv+++++vR ++++++ F+ke+Pv+p+e+ ++ak++
  CDO69004.1 350 iDPQLQESLRNRSIHALKFFTFHPSTPSSVVSALLEDAFFACTanprfsfisGHKGFPIISTAGVQDAADVRYPDASFAGFVKELPVVPDEVLKQAKTM 448
                 79*****************************************88888888777889****************************************** PP

     DUF3684 383 vkkLrdrglikditveDvlkeLesraLteeelveflkWlakkaasgeld..eslvkeLldvavatveeeeeksekiiaLssiktflntk......kipa 473
                 v+ Lr+rg+ik+it++Dvl+eL++r+L+e+e+++++kW+++ ++++ l+  e ++++Ll +av++vee+ e+ +ki++Ls i++fl+ k       ip+
  CDO69004.1 449 VDALRARGMIKEITFTDVLQELRNRPLSEQEMIACFKWWIDIHNQSTLTnlEYARDQLLGAAVLSVEEKGEEAGKILPLSVIESFLTRKsgstgaMIPT 547
                 *****************************************977777762257899*******************************999999999*** PP

     DUF3684 474 dlplPptvlpfkltkslskaeL.ealgWeeLevveWlrylvesassrssleeeqdltkspkfAeqvLevlskaWdslsasskeevvelLkektviPTkl 571
                 d+plPp++lp++++++++++ L +algW+eL++veWl+yl+++    s  + e+d+t s+++Ae+                + evv++L+ ++++PT++
  CDO69004.1 548 DGPLPPHLLPLAISRHFEPQALeTALGWRELTIVEWLQYLTDPV---SPHDREHDITLSAPWAER----------------RPEVVAILRVQACVPTSA 627
                 *****************************************777...4569***********985................8999************** PP

     DUF3684 572 GmkkpseaYfpsvklFdDLpvve.....svkgvkekfLsalgVRktveLqviFtRLlkeseakgkwshvdLikYLasvkddipaedlkrLketaicpae 665
                 G+k+p eaYf+++++F+DLpvv+     +vkg  ek+L+algVRk+v+Lq++F+R++k    +g+w++++Li+YL++v++++++++l+rLk ta++p+e
  CDO69004.1 628 GLKRPGEAYFQNAHIFSDLPVVTmpsgaPVKGPLEKLLQALGVRKHVDLQLVFDRMIK----TGDWTIAQLIRYLVEVQSTLTPTELDRLKLTAAFPRE 722
                 **********************************************************....************************************* PP

     DUF3684 666 eea.ekeskkekkkrykaseLyePkdalreLglpileWpk.gkwrssseeakfLfsLGLrkfPsveelvklaasadeelrekAlkYflanlatnkYaaf 762
                  ++ ek  ++ ++ r +as+LyeP d +reL+lp+++W+   kwr +seeakfLf+L Lr++P+++++v laas+de++r+ A+kY+l+n+a ++Ya++
  CDO69004.1 723 LRPdEKLPDNGRTPRSRASDLYEPLDVFRELKLPVIDWGIhPKWRGNSEEAKFLFKLDLRRYPPLPDIVGLAASQDEKVRSAAFKYLLDNYA-TRYADY 820
                 999777789999***************************99***************************************************.****** PP

     DUF3684 763 d.lskaekaflPvekkkegkklvkPse 788
                 d +++a++af+P+ k+++  +l+kP e
  CDO69004.1 821 DpAAFANVAFIPAVKDGK-PCLAKPLE 846
                 *99**********98875.79*99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 5238.22
//
Query:       CDO69005.1  [L=456]
Description: hypothetical protein BN946_scf184834.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  113.3   0.0    1.8e-22   80.0   0.0    2.2  2  TGT       Queuine tRNA-ribosyltransferase
     0.0085   15.1   0.0      0.012   14.6   0.0    1.2  1  DUF2156   Uncharacterised conserved protein (DUF2156)


Domain annotation for each model (and alignments):
>> TGT  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.6e-11   1.4e-07     109     186 ..      29     120 ..      12     130 .. 0.86
   2 !   80.0   0.0     2e-26   1.8e-22     203     346 ..     185     407 ..     153     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.6e-11
                 EEE-HHHHHHHHHHHT-SEEE-----..--SS--HHHHHHHHHHHHHHHHHHHHHH............SEEEEEE--TT-HHHHHHHHHHHH CS
         TGT 109 vlltpeesieiqeklgsDiimalddv..vpspaskkrveksverTlrwldrcleah............qalfgivqGglyedlreesaeela 186
                 +++t+    ++++k ++Di++al d   +p+p+s+kr+ ks+er+++wl  +l+               +++    Gg+++++r+e  ++l+
  CDO69005.1  29 RKVTASLWNAYVRKCKPDIVVALSDTpfTPPPHSQKRLTKSIERSIAWLTSILKVPapardgpadsrpRHVLVQLAGGTNPQARAEFSDRLT 120
                 5566666668899*********998656999**********************76678889999999888999999*********9998876 PP

  == domain 2  score: 80.0 bits;  conditional E-value: 2e-26
                 HHHHHHHHHHHHGGGS-TTS-EEETTB-SHHHHHHHHH.TT--EEEESHHHHHHHTTEEEE.......................TTE.....EEETTSG CS
         TGT 203 ekeellevveavtellpedkprylmGvgtPedlleava.lGvDmfdcvyptrtarngralt.......................seg.....elnlkna 272
                 ++++l e++ +++e lp++kpr+l  + +P+++l++v+  G+D++d++++ r+a+ g al                        + g       nl ++
  CDO69005.1 185 SSSHLAELLRSSLEVLPAEKPRVLNSPVSPQEVLRLVRdVGIDLVDSSWAQRAADIGIALDfrfpvpsedatppafncvrlrtrK-GgksdlGHNLFDS 282
                 457899999****************************748*********************888888777777666666666541.1444443566666 PP

                 GGTT--SB...................SSSS--SHHHH................................H-BHHHHHHHHHTT-HHHHHHHHHHHHHH CS
         TGT 273 kyaedfsp...................ldegCsCytCk................................nytraylhhllktkemlgaiLltiHNlhy 320
                  y +d                        + C+C +C+                                 +tray+hhll+t+em +  Ll++HN+ +
  CDO69005.1 283 AYVHDHFRlassfidgqsavslgidtaHAAVCECGACSprapatrilhsdvdtqawqdpscrttpsalqpAFTRAYVHHLLHTHEMSAHALLAMHNISV 381
                 66665333455566666666666555567789999998899999999999999999999999998888888**************************** PP

                 HHHHHHHHHHHHHTT-HHHHHHHHHH CS
         TGT 321 ylelfkriReaIkegtfeefveefar 346
                 +  +++ iRe I++g  e f  e+ar
  CDO69005.1 382 FSAFLEGIRETIARGGEEGFTHEVAR 407
                 **************998888887766 PP

>> DUF2156  Uncharacterised conserved protein (DUF2156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-06     0.012      79     162 ..     350     433 ..     293     452 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-06
                 E-HHHHHHHHHCTEEEECCCEEEEEEHHHHHTTSGGGHHHHHHHHHHHHCTECEEEEEGGGH-HHHHHHHHHHHHHHHHHTTCH CS
     DUF2156  79 vseelaellaelglsalrlgeeavvdledftLsGkkfrnvRnainraeraGytveverisdlspellaelkeiseeWlkqkeat 162
                 +++++++++ ++ l++ ++ + a++++ + ++    ++ +R +i+r  ++G+t+ev r++++ +e+la  ++ +  W++ ++a+
  CDO69005.1 350 LQPAFTRAYVHHLLHTHEMSAHALLAMHNISVFSAFLEGIRETIARGGEEGFTHEVARFEEAYDEDLALWAAAESMWIEVERAR 433
                 4566777777777*****************9999********************************************996333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3221.77
//
Query:       CDO69006.1  [L=1391]
Description: hypothetical protein BN946_scf184834.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-38  131.1   0.0    3.3e-15   55.9   0.0    3.4  3  EF-hand_4       Cytoskeletal-regulatory complex EF hand
    1.5e-11   44.6   0.1    9.7e-05   22.8   0.0    4.2  4  EF-hand_7       EF-hand domain pair
    8.4e-09   34.4   0.8        1.1    9.0   0.0    5.5  5  EF-hand_1       EF hand
    2.1e-06   27.2   0.4        5.6    7.2   0.0    5.3  5  EF-hand_6       EF-hand domain
      4e-06   26.6   0.0    8.6e-06   25.5   0.0    1.6  1  UBA             UBA/TS-N domain
    0.00022   21.0   0.0        5.8    6.8   0.0    4.2  4  EF-hand_8       EF-hand domain pair
     0.0079   16.1   0.8      0.034   14.0   0.8    2.1  1  Takusan         Takusan
  ------ inclusion threshold ------
       0.03   14.4  45.3       0.13   12.3  14.5    2.3  2  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
       0.11   12.4   0.0       0.26   11.1   0.0    1.7  1  UBA_4           UBA-like domain
       0.12   12.8  35.1      0.035   14.6  19.3    2.3  2  Fez1            Fez1
        1.3    9.0  37.6       0.21   11.6  11.2    3.3  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
        1.3    8.6  35.8        2.4    7.7  35.8    1.4  1  Lebercilin      Ciliary protein causing Leber congenital amau
        4.9    7.2   8.3       0.75    9.8   0.1    3.5  4  Bcr-Abl_Oligo   Bcr-Abl oncoprotein oligomerisation domain
        6.6    5.5  39.6        1.9    7.3   8.6    2.8  2  Spc7            Spc7 kinetochore protein
        9.1    6.4  50.5       0.86    9.8  28.1    3.3  3  ATG16           Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.1e-07   0.00013      13      72 ..      16      76 ..       8      83 .. 0.86
   2 !   55.9   0.0   2.8e-18   3.3e-15       4     100 ..     127     223 ..     124     227 .. 0.93
   3 !   49.1   0.0   3.5e-16   4.2e-13       8      94 ..     318     403 ..     313     407 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.1e-07
   EF-hand_4 13 weifsglkped.nkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrli 72
                 +if   + ++   +tgd +  v+  skl+   l+++w++ad d++g l  +  ++a+rl+
  CDO69006.1 16 NQIFAQADTQKlGVITGDAAVKVFSGSKLPPAVLAEVWNIADEDNNGVLTRKGVAVAVRLL 76
                578866655442789*****************************************99986 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 2.8e-18
   EF-hand_4   4 leeleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahlv 100
                 l  +++ k+ ++f g +p++  l g+k+  v+ +skl+ dkl++iw+lad  + g ld  +f+iam li   + g+++d+P+ lP  +  ++ +++v
  CDO69006.1 127 LTPQDKAKFLKLFLGCHPVNGLLPGEKARDVFVKSKLPVDKLSHIWNLADTKNRGALDATDFTIAMYLIQACMSGQLRDIPAVLPPHIYEQAANSIV 223
                 6678899******************************************************************************999888877776 PP

  == domain 3  score: 49.1 bits;  conditional E-value: 3.5e-16
   EF-hand_4   8 eikkyweifsglkpe.dnkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpe 94 
                 e+ +   if +l++e + ++ gd + p + +skl+ed l+++wdlad+++dg+l  + f++am+li   + g  kd+P++lP  lvp 
  CDO69006.1 318 EKANSDRIFDTLDKEkKGYIEGDVAVPFMLQSKLPEDVLAQVWDLADLNNDGRLTRDGFAVAMHLIQGKLAG--KDIPATLPLSLVPP 403
                 55566689999976615699**********************************************999887..69**********96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00054      0.64       6      64 ..      17      67 ..       8      74 .. 0.76
   2 ?    5.7   0.0     0.017        20       3      69 ..     167     191 ..     152     202 .. 0.64
   3 !   22.8   0.0   8.1e-08   9.7e-05       6      70 ..     324     380 ..     320     381 .. 0.89
   4 ?   -1.9   0.2       4.1   4.9e+03      20      49 ..     622     650 ..     622     658 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00054
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfd 64
                ++F + Dt + g ++ +   ++          gskl++  l ++++  D d++Gv+++ 
  CDO69006.1 17 QIFAQADTQKLGVITGDAAVKV--------FSGSKLPPAVLAEVWNIADEDNNGVLTRK 67
                5677777777777777772224........5588999999****************985 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.017
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 kl  ++++ Dt ++g ld ++                                          F  +
  CDO69006.1 167 KLSHIWNLADTKNRGALDATD------------------------------------------FTIA 191
                 344455555555555555555..........................................5444 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 8.1e-08
   EF-hand_7   6 eaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++F+ lD+ + gy++ +  +  ++         +skl+++ l ++++  D+++dG++++d F  ++
  CDO69006.1 324 RIFDTLDKEKKGYIEGDVaVP-FM--------LQSKLPEDVLAQVWDLADLNNDGRLTRDGFAVAM 380
                 57****************666.54........468999999*********************9887 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.1
   EF-hand_7  20 dkeellrllrkifqgagegsklsdeelell 49 
                 dkee+++l+rk+++  g + + ++ e+e+l
  CDO69006.1 622 DKEEVRDLHRKMSEV-GQQIEATKAEVEKL 650
                 689999999999877.77777777777776 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.34   4.1e+02       2      20 ..      15      33 ..      14      40 .. 0.87
   2 !    6.8   0.0    0.0044       5.2       2      19 ..      49      66 ..      48      67 .. 0.88
   3 ?    4.5   0.0     0.024        29       3      27 ..     169     193 ..     167     195 .. 0.88
   4 !    6.0   0.4    0.0081       9.6       3      18 ..     323     338 ..     322     340 .. 0.91
   5 !    9.0   0.0   0.00089       1.1       3      22 ..     357     376 ..     355     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.34
                HHHHHHHHTTTSSSEEEHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfe 20
                +++iF+ +D+ + G I+ +
  CDO69006.1 15 VNQIFAQADTQKLGVITGD 33
                679***********99965 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0044
                HHHHHHHHTTTSSSEEEH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdf 19
                l e+++++D D++G +++
  CDO69006.1 49 LAEVWNIADEDNNGVLTR 66
                5699***********986 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.024
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                   i++++D+ + G +d  +f  ++ 
  CDO69006.1 169 SHIWNLADTKNRGALDATDFTIAMY 193
                 569*****************99885 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0081
                 HHHHHHHTTTSSSEEE CS
   EF-hand_1   3 keiFrefDkDgdGkId 18 
                 ++iF+ +Dk + G+I+
  CDO69006.1 323 DRIFDTLDKEKKGYIE 338
                 68*************7 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.00089
                 HHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEf 22 
                  ++++++D ++dG+++++ f
  CDO69006.1 357 AQVWDLADLNNDGRLTRDGF 376
                 5799************9855 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.3   1.6e+03       3      20 ..      16      33 ..      14      40 .. 0.85
   2 ?    5.4   0.0     0.018        21       4      27 ..      51      74 ..      48      77 .. 0.79
   3 ?    1.7   0.0      0.27   3.3e+02       4      26 ..     170     192 ..     167     195 .. 0.87
   4 ?    5.1   0.2     0.021        25       4      19 ..     324     339 ..     322     341 .. 0.89
   5 !    7.2   0.0    0.0047       5.6       4      26 ..     358     380 ..     355     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
   EF-hand_6  3 reaFklfDkdgdGkidae 20
                +++F + D+ + G i+ +
  CDO69006.1 16 NQIFAQADTQKLGVITGD 33
                789************986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.018
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalr 27
                e++++ D d++G ++++ +  a r
  CDO69006.1 51 EVWNIADEDNNGVLTRKGVAVAVR 74
                789999*********987666655 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.27
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 ++++l D+ + G +da ++  a+
  CDO69006.1 170 HIWNLADTKNRGALDATDFTIAM 192
                 789999*************8776 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.021
   EF-hand_6   4 eaFklfDkdgdGkida 19 
                 ++F+ +Dk++ G+i  
  CDO69006.1 324 RIFDTLDKEKKGYIEG 339
                 79************76 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0047
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 ++++l D ++dG ++++ +  a+
  CDO69006.1 358 QVWDLADLNNDGRLTRDGFAVAM 380
                 68999***********9887666 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   7.2e-09   8.6e-06       4      37 .]    1354    1387 ..    1352    1387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7.2e-09
                  HHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA    4 eaiqrLveMGFdreevveALratgnNeErAveyL 37  
                  ea+ +L+ MGF+r ++v AL+  g++++rA++ L
  CDO69006.1 1354 EAVKTLCGMGFSRTQAVTALEEHGYDVQRALNSL 1387
                  789****************************966 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.37   4.4e+02      33      49 ..      54      70 ..      35      75 .. 0.81
   2 !    6.8   0.0    0.0049       5.8      22      49 ..     162     189 ..     153     194 .. 0.84
   3 ?   -0.6   0.0         1   1.2e+03      29      43 ..     323     337 ..     317     338 .. 0.87
   4 !    6.8   0.0     0.005         6      33      52 ..     361     380 ..     346     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.37
   EF-hand_8 33 refDtdgdGkisfeEFc 49
                + +D+d++G+++ +   
  CDO69006.1 54 NIADEDNNGVLTRKGVA 70
                678********987655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0049
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEFc 49 
                 +l  +++ ++ +++Dt++ G+++ ++F 
  CDO69006.1 162 KLPVDKLSHIWNLADTKNRGALDATDFT 189
                 489999********************95 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1
   EF-hand_8  29 dilfrefDtdgdGki 43 
                 d +f+++D +++G+i
  CDO69006.1 323 DRIFDTLDKEKKGYI 337
                 569***********9 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.005
   EF-hand_8  33 refDtdgdGkisfeEFcvll 52 
                 +++D+++dG+++ + F v +
  CDO69006.1 361 DLADLNNDGRLTRDGFAVAM 380
                 679**************988 PP

>> Takusan  Takusan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.8   2.8e-05     0.034      10      55 ..     673     718 ..     669     722 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
     Takusan  10 lekeqakkklEeLkleLrkitreRdELrdiLalytegslndrpsvr 55 
                  ek ++ k+lEe k eL+ +t+eR+     La   e++ +++ps+ 
  CDO69006.1 673 AEKAKVDKELEEAKAELQVVTKEREGAEAQLAQAQEEEKQQQPSAQ 718
                 68999***************************99999988877765 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  14.5   0.00011      0.13       2     109 ..     520     627 ..     519     629 .. 0.97
   2 ?    8.6  23.6    0.0015       1.8       2      93 ..     625     716 ..     624     722 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkee 100
                 e+ +l+++++s +++ e a+++ ++l++++++qa+ ++  q + ++      +++k l++l+e++++  a i++ ++e+  a+++l++ + + +e + +
  CDO69006.1 520 EIGNLKNQLNSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAKAAYDTEMKLLSTLKERFASQSAVIQKTREELIHAESDLSATRVEKAEIEGS 618
                 8899*****************************************************************************************999999 PP

  TPR_MLP1_2 101 lekelsele 109
                 l ++++e++
  CDO69006.1 619 LLRDKEEVR 627
                 999999875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleesees 93 
                 e++ l  +++++ +++e+ +a+++kl++d ++q+ +++ a+++ ++   ++a+  kel+++++el+ +++e++ ++a++ +a++e ++++ s
  CDO69006.1 625 EVRDLHRKMSEVGQQIEATKAEVEKLRKDAKQQKGLLAIAKKQLATREAEKAKVDKELEEAKAELQVVTKEREGAEAQLAQAQEEEKQQQPS 716
                 7788999*****************************************************************************99998876 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.26      12      35 ..    1363    1386 ..    1350    1389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
       UBA_4   12 GadeekArqlLeannWdLerAisl 35  
                  G+++ +A+  Le ++ d++rA+++
  CDO69006.1 1363 GFSRTQAVTALEEHGYDVQRALNS 1386
                  56********************97 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6  19.3   2.9e-05     0.035       6     145 ..     515     655 ..     513     658 .. 0.82
   2 ?    1.7  19.7      0.26   3.1e+02      33     131 ..     619     717 ..     608     725 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.9e-05
        Fez1   6 cQksGEislLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreels 104
                 + ks Ei  LK+QL  + + + +  +e  +l  q+ e  a l + +++++++++++++  + l +++++++ +++  + +re++ ++e++l+ +r e +
  CDO69006.1 515 QDKSAEIGNLKNQLNSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAKAAYDTEMKLLSTLKERFASQSAVIQKTREELIHAESDLSATRVEKA 613
                 679*******************************************************************************************99888 PP

        Fez1 105 elsleeeeaalesdeakaqrqe.aeeleelkreverlraeLk 145
                 e + +  + ++e ++ + + +e  +++e+ k+eve+lr+  k
  CDO69006.1 614 EIEGSLLRDKEEVRDLHRKMSEvGQQIEATKAEVEKLRKDAK 655
                 866554444444433333322224566666777777766544 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.26
        Fez1  33 ivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeele 131
                 ++  k ++r+l+ k++e  ++i+ +++++e+  ++ ++ +  l+ +k++  + + +  k+++el+e + el+ +++e+e a+++  +a++++++++ ++
  CDO69006.1 619 LLRDKEEVRDLHRKMSEVGQQIEATKAEVEKLRKDAKQQKGLLAIAKKQLATREAEKAKVDKELEEAKAELQVVTKEREGAEAQLAQAQEEEKQQQPSA 717
                 556678888888888888888888888888888888888888888888888888888899999999999999988777766655555555544444333 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.9    0.0047       5.6      59     107 ..     519     567 ..     513     573 .. 0.77
   2 ?   11.6  11.2   0.00017      0.21      51     139 ..     581     669 ..     573     670 .. 0.92
   3 ?    2.1   9.7      0.15   1.8e+02      40      95 ..     666     723 ..     663     726 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0047
  CENP-F_leu_zip  59 eeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnssle 107
                     +ei +l+++l+  +  L++ r+e+ +Le+++ ++     +L++  ss +
      CDO69006.1 519 AEIGNLKNQLNSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAK 567
                     6788888888888888888888888888888888888888877777654 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00017
  CENP-F_leu_zip  51 kaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLqtqlkeln 139
                     k+   +  + i++ +eel + e+dL+a+r ek e+e +l   +e+v +L +  s++ +++e   +e  ++++++k++  +L   +k+l+
      CDO69006.1 581 KERFASQSAVIQKTREELIHAESDLSATRVEKAEIEGSLLRDKEEVRDLHRKMSEVGQQIEATKAEVEKLRKDAKQQKGLLAIAKKQLA 669
                     55555667789999***************************************************************999999999985 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.15
  CENP-F_leu_zip  40 qekvileaEtsk..aevetlkeeieelaeelreleldLvalrsekeeLekelqkkqer 95 
                     ++ +++eaE++k  +e+e+ k+e++  ++e++  e++L++ ++e ++ + + q ++  
      CDO69006.1 666 KQLATREAEKAKvdKELEEAKAELQVVTKEREGAEAQLAQAQEEEKQQQPSAQLSNGH 723
                     5566777777775567777888888888888888888887777777666666666555 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  35.8     0.002       2.4       7     192 ..     515     702 ..     513     718 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.002
  Lebercilin   7 sarllkikeLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklk 105
                 + +  +i +L+n+l+  ++ le+ r+E  +L+r+   q++ L  ++ + ++     +  ++ + +l+er+    +  +++ ++l ++e++l  ++ +  
  CDO69006.1 515 QDKSAEIGNLKNQLNSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAKAAYDTEMKLLSTLKERFASQSAVIQKTREELIHAESDLSATRVEKA 613
                 567889************************************888777777777777777777788888888888899999999999999999999999 PP

  Lebercilin 106 klkk.LsedknLaereeLqkkLeeleakleekeekikeLerkleleek...sfrrqlaaekkktkeaqeevkalqeeierlkqklkeKere 192
                 + +  L +dk  +e  +L++k++e+ +++e+++ ++++L++ +++++      ++qla+ +  + ++ +e++++++e++ ++++ +  e +
  CDO69006.1 614 EIEGsLLRDK--EEVRDLHRKMSEVGQQIEATKAEVEKLRKDAKQQKGllaIAKKQLATREAEKAKVDKELEEAKAELQVVTKEREGAEAQ 702
                 9988899888..58999**************************999862225689************************999988776665 PP

>> Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00063      0.75      26      71 ..     528     573 ..     518     574 .. 0.91
   2 ?   -0.8   0.4       1.3   1.5e+03      25      51 ..     632     658 ..     622     675 .. 0.80
   3 ?   -1.5   0.1       2.1   2.6e+03      28      46 ..     677     695 ..     665     700 .. 0.84
   4 ?   -1.3   0.0       1.9   2.3e+03      58      72 ..    1368    1382 ..    1366    1383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00063
  Bcr-Abl_Oligo  26 vedieqeLerCkaslrrLekelneekfkviyLqtllakerksyDre 71 
                    ++  ++ Le+ +++   Le++++e+   +  Lqt l+  + +yD+e
     CDO69006.1 528 LNSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAKAAYDTE 573
                    5567899*************************************86 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
  Bcr-Abl_Oligo  25 svedieqeLerCkaslrrLekelneek 51 
                     ++++ q++e  ka++ +L+k+ +++k
     CDO69006.1 632 KMSEVGQQIEATKAEVEKLRKDAKQQK 658
                    578889999999999999999877766 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.1
  Bcr-Abl_Oligo  28 dieqeLerCkaslrrLeke 46 
                     +++eLe+ ka+l+ + ke
     CDO69006.1 677 KVDKELEEAKAELQVVTKE 695
                    5789******999887665 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.9
  Bcr-Abl_Oligo   58 qtllakerksyDrer 72  
                     q++ a e ++yD +r
     CDO69006.1 1368 QAVTALEEHGYDVQR 1382
                     89999********99 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.6    0.0016       1.9     185     261 ..     520     595 ..     509     598 .. 0.58
   2 ?    0.9  27.8      0.14   1.6e+02     133     264 ..     573     710 ..     570     722 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
        Spc7 185 klqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeck 261
                 ++ + +++l ++++++Le++r+e a+l+ ++ e+ ++la+lq+ql + +++ ++  +  s+l+e+ a++  v+++++
  CDO69006.1 520 EIGNLKNQL-NSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAKAAYDTEMKLLSTLKERFASQSAVIQKTR 595
                 223333332.2355566666666666666666666666666666666666666666666666666666666666655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
        Spc7 133 RmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles......idkeeLeelreelaelkaeieekkkelael 225
                  m+ll++Lke+  ++ + +++ +e+L + e+ l++   e  e + +l +  e+ ++ ++++++       +k+e+e+lr++ +++k  ++  kk+la++
  CDO69006.1 573 EMKLLSTLKERFASQSAVIQKTREELIHAESDLSATRVEKAEIEGSLLRDKEEVRDLHRKMSEvgqqieATKAEVEKLRKDAKQQKGLLAIAKKQLATR 671
                 699999999999999999999999999999999999988888888888777777776666666444655568888888888888888888888888888 PP

        Spc7 226 qeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                 +++++++++++ee+k++ + + +e + ae  l + ++ +
  CDO69006.1 672 EAEKAKVDKELEEAKAELQVVTKEREGAEAQLAQAQEEE 710
                 888888888888888888888888888877776665544 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  13.1      0.04        48      69     151 ..     514     596 ..     488     616 .. 0.63
   2 ?    9.8  28.1   0.00072      0.86      56     176 ..     592     712 ..     573     718 .. 0.83
   3 ?   -3.3   1.4       7.3   8.8e+03      40      40 ..     885     885 ..     818     959 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.04
       ATG16  69 nskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekek 151
                  +++sa+i +l+++l ++++ l+++  +r++l+ +++e  + l+ l+++l++ +++ +   +  ++l+++ +++ + ++  ++
  CDO69006.1 514 LQDKSAEIGNLKNQLNSTNKSLETARNERATLERQVTEQAAMLASLQTQLSSAKAAYDTEMKLLSTLKERFASQSAVIQKTRE 596
                 35666677777777777777777777777777777777777777777777777777777767777766666666666555544 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00072
       ATG16  56 ksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq 154
                 +++ e++  a+++ s+++ + ++ e  l++ +ee+ +l+++ +e  q++ ++++e++kl++ +k+++  la ++++ a+ e + ++ ++el+e ++ +q
  CDO69006.1 592 QKTREELIHAESDLSATRVEKAEIEGSLLRDKEEVRDLHRKMSEVGQQIEATKAEVEKLRKDAKQQKGLLAIAKKQLATREAEKAKVDKELEEAKAELQ 690
                 223333333333567788889999*************************************************************************** PP

       ATG16 155 dlqDElsaLqlqlnqaEeklrk 176
                  +  E +  + ql qa e+ ++
  CDO69006.1 691 VVTKEREGAEAQLAQAQEEEKQ 712
                 **************99998776 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.3
       ATG16  40 k 40 
                 +
  CDO69006.1 885 R 885
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1730  (0.0964917); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.47u 0.35s 00:00:01.81 Elapsed: 00:00:00.54
# Mc/sec: 7702.18
//
Query:       CDO69007.1  [L=334]
Description: hypothetical protein BN946_scf184834.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-39  136.4   0.0    1.8e-38  132.5   0.0    2.5  1  PDEase_II      cAMP phosphodiesterases class-II
    3.9e-06   26.5   0.0      6e-06   25.9   0.0    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.012   16.1   0.8      0.022   15.2   0.8    1.4  1  Packaging_FI   DNA packaging protein FI


Domain annotation for each model (and alignments):
>> PDEase_II  cAMP phosphodiesterases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0     3e-42   1.8e-38      76     338 .]      37     329 ..      24     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 3e-42
                 HHHHTEEEEE-S---GGGTHHHHHHGGGGGS-S.--EEEEE-HHHHHHHHHHTBSSSSB--GGGSTT-....-EEEEE--TT--EE-SSSSEEEEE... CS
   PDEase_II  76 eiknniksylItHsHLDHvsglvinSaefykaqlkkktivGlpytInalqkhlFNnkvWPnlpsfkrvnlislvklielepkelnkltettldvvanef 174
                 e+   i+ ylI+H+HLDH+sglv+   + +        ++G ++t++a++ ++F +k+WP l s           ++ l    l +       +v    
  CDO69007.1  37 EVYSWIRCYLISHPHLDHLSGLVLSAGSTKS---ASTPVYGTQHTLEAIS-DIFSGKIWPALASWTEE------PGKPLRLARLSPDD-GYTPIVG--- 121
                 66777999***************96555555...4788***********8.6************9955......44444444444443.2335555... PP

                 ........EEEEEEE-TTT--EEE....EEEEEEEETTT--EEEEE-S-----TTTS-HHHHHHHHHHHHS-GGGEEEEEEE--S-TT--HHHHTTS-- CS
   PDEase_II 175 sfsvkvktfevnhgslikknsevl....SsaflftdevskesilvfgDvesdlssseslnlkiwkviaelIkrdkLkaIliEcStpkeipdeelyGHlt 269
                   s +v+t+ v hg +  + +       Ssaf ++ + s + +l+fgDve+d+ ss + n  +w++ a++I+ d L+a++iEcS p++ pde lyGHl+
  CDO69007.1 122 --SLSVRTMVVSHGPSSDTTATSNppyeSSAFFLRHDPSAREFLFFGDVEPDTLSSNPQNRDVWRTAAPKIP-DVLSALFIECSWPEDRPDELLYGHLS 217
                 ..77888888888877665554445556*******************************************9.56************************ PP

                 HHHHHHHHHHHH.........................................HHHT-TT.TTTT-EEEEE-B---S-SS.-.H.HHHHHHHHHHHHHH CS
   PDEase_II 270 PrllikelkqLa.........................................tlststeqpllgLnviveHvKsqvaedad.p.rktileelekLkea 325
                 P +l++el+ La                                                  l gL+v + H K+   e  d p +++i  + + L + 
  CDO69007.1 218 PTHLVEELTSLArevvesrarsrassdedsgqstdserqhtrrskrrrrsdsdIRDVDVRGALAGLRVYIIHCKDDLHETYDrPiQEVIAGQVRTLVND 316
                 ************888888888888888888888888888888888777777554445555677888888888887777766423245667777777777 PP

                 TT---EEEE--TT CS
   PDEase_II 326 enlgvrisIaleG 338
                 + lg +i+  ++G
  CDO69007.1 317 RGLGAEIIAVEQG 329
                 7777777766665 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0     1e-09     6e-06      24     185 ..      35     222 ..      11     236 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1e-09
                    SS--..SEEEEE-SS--HHHHGGGGCCCC.C--EE..EEEEEEHHHHHHCCTTCGHHHCHTT........TTEEEEEE-TTSEEEECSTTEEEEEE CS
  Lactamase_B_2  24 lrdelppidaVllthaHyDHlaglltlre.lrpkk..lplyapkgvlavleanfvylaleee........pavnvheldwgesfelgdggleitat 108
                    + +  + i   l++h H DHl gl   +  ++  +   p+y+++++l+ +++ f+   ++          +++++  l +++  ++  g l+++++
     CDO69007.1  35 PAEVYSWIRCYLISHPHLDHLSGLVLSAGsTK--SasTPVYGTQHTLEAISDIFSGKIWPALaswteepgKPLRLARLSPDDGYTPIVGSLSVRTM 128
                    45566688999************655555433..3359**********777776544433335555667778999999999999996668999999 PP

                    EE-EE--C...TCCE-TTTSEEEEEE..CTTEEEEEESS-S---.......HHHHHHHCT..-SEEEEE-S-SSTTHHHH.....HHT---STSHH CS
  Lactamase_B_2 109 parhksgr...rldrnagdtlGlrie..gggkrvyyigDtgyip.......eeigerlgg..adllllditayeddemir.....hmgHltpeeav 185
                     ++h+      +  + + +  ++ ++   + + +++ gD++  +        ++++  ++  +d+l   + + e  ++++       gHl+p + v
     CDO69007.1 129 VVSHGPSSdttATSNPPYESSAFFLRhdPSAREFLFFGDVEPDTlssnpqnRDVWRTAAPkiPDVLS--ALFIECSWPEDrpdelLYGHLSPTHLV 222
                    999998887774444445666666665478888******9966654444443344444444445444..555555555545555666666665555 PP

>> Packaging_FI  DNA packaging protein FI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.8   3.6e-06     0.022      29     114 ..     225     310 ..     215     327 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
                   XXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX-------.....-S--EEEEESS-B---EE-SSSS-EES-B-TT-E CS
  Packaging_FI  29 Lalrvaeleeeld....dvdesaGqdaadsrdstehedevesadsDeaiveseiGtrservsveaLatLhvealhatrnepvslvlpGva 114
                   L+    e+ e       + de +Gq +   r+ t   +    +dsD  +v+     r+ +  ++       + lh t ++p++ v++G++
    CDO69007.1 225 LTSLAREVVESRArsraSSDEDSGQSTDSERQHTRRSKRRRRSDSDIRDVDV----RGALAGLRVYIIHCKDDLHETYDRPIQEVIAGQV 310
                   44444444433333446899***************99999999********4....55555555444444579**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2170.75
//
Query:       CDO69008.1  [L=697]
Description: hypothetical protein BN946_scf184834.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-36  123.7   2.5    1.1e-06   29.3   0.0    6.5  6  WD40           WD domain, G-beta repeat
    1.1e-34  120.3   6.5    1.1e-34  120.3   6.5    3.8  3  Striatin       Striatin family
    1.6e-11   44.3   0.6       0.15   12.3   0.0    5.5  7  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00043   19.1   0.0      0.013   14.3   0.0    2.8  3  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.5e-09   1.6e-05       3      37 ..     353     388 ..     351     389 .. 0.93
   2 !   29.3   0.0   2.4e-10   1.1e-06       2      37 ..     407     443 ..     406     443 .. 0.93
   3 !   18.1   0.0   8.2e-07    0.0037       6      38 .]     464     497 ..     460     497 .. 0.91
   4 !   11.9   0.0   7.2e-05      0.32      17      38 .]     578     603 ..     565     603 .. 0.81
   5 !   21.5   0.2   6.8e-08    0.0003       1      37 [.     607     644 ..     607     645 .. 0.95
   6 !   10.9   0.0   0.00015      0.69       3      37 ..     652     691 ..     650     691 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.5e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                   rtl+ H + v+++af+p    las++dD tv+iW
  CDO69008.1 353 AKRTLRNHlDAVRAIAFHPTELCLASAGDDSTVKIW 388
                 5799****999************************* PP

  == domain 2  score: 29.3 bits;  conditional E-value: 2.4e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++ tl+GH   +t+l  sp++ +l s+s+D ++riW
  CDO69008.1 407 EPQLTLRGHsAAITCLVHSPSKGLLYSASMDSSIRIW 443
                 5889*****555************************* PP

  == domain 3  score: 18.1 bits;  conditional E-value: 8.2e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l GH + v++la  +d + l+s++  g v++Wd
  CDO69008.1 464 ELIGHtDAVWDLALARDESTLISCGAEGLVKVWD 497
                 689**666**************9999*******9 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 7.2e-05
                 E....EETTSSEEEEEETTSEEEEEE CS
        WD40  17 a....fspdgawlasGsdDgtvriWd 38 
                 a     +p  ++l++G++D+++ri+d
  CDO69008.1 578 AnamvSHPTMPLLITGHEDKHIRIFD 603
                 355558899999************98 PP

  == domain 5  score: 21.5 bits;  conditional E-value: 6.8e-08
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 gqc+++  +H + vtsl+ +  g +l+sGs D++vr W
  CDO69008.1 607 GQCTHSMLAHlDAVTSLSLDAAGFLLVSGSHDCSVRYW 644
                 79********999****************99******* PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.00015
                 EEEEEESS..SS...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH..ss...vtslafspdgawlasGsdDgtvriW 37 
                 c ++ t H  +    v ++ f+p+ + +as++ Dg v+++
  CDO69008.1 652 CKQENTSHreKAregVLDVEFHPSLPVMASAGADGVVKLY 691
                 55566778654477899************9999*****96 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4      0.71   3.2e+03      78      90 ..      45      57 ..      28      73 .. 0.44
   2 !  120.3   6.5   2.5e-38   1.1e-34       1      71 [.      76     145 ..      76     169 .. 0.88
   3 ?   -7.9  13.2         4   1.8e+04     117     118 ..     296     327 ..     239     368 .. 0.47

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.71
    Striatin 78 aakenkkkekeee 90
                ++++++ ++++++
  CDO69008.1 45 QQQQQQPQAPQQQ 57
                1111111111111 PP

  == domain 2  score: 120.3 bits;  conditional E-value: 2.5e-38
    Striatin   1 TLqgvlhFLQtEwhrherdRneweiEraEmkarIakLegerrgaenlkkdlvrrikmLEyalkqerakylk 71 
                 TL +vlh+LQtEw+r+erdRneweiEraEm+arIa+Legerr+ +n+k dl+rrikmLEyal+ er   ++
  CDO69008.1  76 TLSNVLHYLQTEWRRYERDRNEWEIERAEMRARIALLEGERRSFDNVKLDLMRRIKMLEYALRVERCL-QE 145
                 99***************************************************************954.23 PP

  == domain 3  score: -7.9 bits;  conditional E-value: 4
    Striatin 117 s..............................e 118
                 s                               
  CDO69008.1 296 SqegseqtrhqlnsnitgasawerrareeedG 327
                 12222222333333344444444433222210 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.5e-05       0.2      26      81 ..     347     404 ..     336     426 .. 0.77
   2 ?   -0.3   0.0      0.31   1.4e+03      37      65 ..     415     443 ..     409     445 .. 0.87
   3 ?   -2.3   0.0       1.2   5.5e+03      44      67 ..     475     498 ..     468     515 .. 0.53
   4 !    9.7   0.0   0.00022         1      49      81 ..     539     571 ..     531     581 .. 0.85
   5 !   12.3   0.0   3.5e-05      0.15      48      88 ..     585     624 ..     573     628 .. 0.85
   6 !   11.6   0.0   5.8e-05      0.26      52      88 ..     589     624 ..     585     663 .. 0.89
   7 ?    3.0   0.0     0.029   1.3e+02      33      69 ..     659     695 ..     632     697 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-05
  ANAPC4_WD40  26 gqrvwtl..eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                    +vw++  +  ++   vr++a++p +  La a +d++v++  +  + + + ++ +++
   CDO69008.1 347 STKVWKAkrTLRNHLDAVRAIAFHPTELCLASAGDDSTVKIWRVDLASLTSPSTRATT 404
                  57999996666788899************************99987777666555554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrll 65 
                  ++  +++L  +p+  lL  a  d+++r+ 
   CDO69008.1 415 HSAAITCLVHSPSKGLLYSASMDSSIRIW 443
                  677899*******************9995 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrllda 67 
                  La   d++ L    ++g v++ d+
   CDO69008.1 475 LALARDESTLISCGAEGLVKVWDV 498
                  444455555555555555555444 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00022
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  d k  avay++ +++++++esgk + +l+v+  
   CDO69008.1 539 DLKKVAVAYQNAAIKIFEIESGKELLKLQVDPV 571
                  56778********************99998766 PP

  == domain 5  score: 12.3 bits;  conditional E-value: 3.5e-05
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  p   lL  +++d ++r++d+++g++ hs+ ++ + avt+l+
   CDO69008.1 585 PTMPLLITGHEDKHIRIFDINTGQCTHSMLAHLD-AVTSLS 624
                  5556899**********************99988.588875 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 5.8e-05
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  lL  +++d ++r++d+++g++ hs+ ++ + avt+l+
   CDO69008.1 589 LLITGHEDKHIRIFDINTGQCTHSMLAHLD-AVTSLS 624
                  789999999***********9999988887.587775 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.029
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +++k  + v +++++p+  ++a a +dg v+l+   s
   CDO69008.1 659 HREKAREGVLDVEFHPSLPVMASAGADGVVKLYATTS 695
                  45677788999*********************98765 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.9e-06     0.013     201     248 ..     416     461 ..     392     487 .. 0.77
   2 ?    0.6   0.0     0.042   1.9e+02     203     241 ..     471     509 ..     467     522 .. 0.82
   3 ?    0.1   0.0     0.056   2.5e+02     207     241 ..     581     615 ..     567     660 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-06
                    GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHH CS
  Nucleoporin_N 201 reeivqlridssrrilytlsskgvirvydlsasngesslksdidirqi 248
                    + +i++l++++s+++ly++s ++ ir++ l ++   ++ + ++d +++
     CDO69008.1 416 SAAITCLVHSPSKGLLYSASMDSSIRIWALPPP--YHTTYAPYDASRA 461
                    678**************************9977..5555555555554 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.042
                    -EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEE CS
  Nucleoporin_N 203 eivqlridssrrilytlsskgvirvydlsasngesslks 241
                    +++ l+       l++  ++g ++v+d+s ++g+ slk 
     CDO69008.1 471 AVWDLALARDESTLISCGAEGLVKVWDVSGPSGGGSLKL 509
                    5666666666778999999**************988875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.056
                    EEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEE CS
  Nucleoporin_N 207 lridssrrilytlsskgvirvydlsasngesslks 241
                    ++++++  +l+t ++++ ir++d+++ +  +s   
     CDO69008.1 581 MVSHPTMPLLITGHEDKHIRIFDINTGQCTHSMLA 615
                    77778888999999999999999996554555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1253  (0.0698868); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 4266.32
//
Query:       CDO69009.1  [L=763]
Description: hypothetical protein BN946_scf184834.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-41  140.0   0.0    2.1e-10   40.5   0.0    4.3  4  EF-hand_4  Cytoskeletal-regulatory complex EF hand
    6.3e-12   45.8   0.0     0.0012   19.3   0.3    4.9  5  EF-hand_7  EF-hand domain pair
    2.6e-10   39.1   0.0      0.071   12.7   0.0    5.3  5  EF-hand_1  EF hand
      9e-07   28.3   1.3        1.6    8.8   0.0    5.8  6  EF-hand_6  EF-hand domain
    4.5e-06   26.9   2.6    5.3e-05   23.4   2.6    2.4  1  GAT        GAT domain
    2.9e-05   24.3   2.0      0.031   14.4   0.0    2.8  3  End3       Actin cytoskeleton-regulatory complex protein END3
    0.00057   19.7   0.0        2.2    8.2   0.0    4.8  5  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.1e-09   5.4e-06      13      80 ..     182     250 ..     173     260 .. 0.90
   2 !   40.5   0.0   8.3e-14   2.1e-10       4      69 ..     292     357 ..     289     362 .. 0.94
   3 !   28.2   0.0   5.4e-10   1.4e-06      14      88 ..     411     484 ..     403     494 .. 0.85
   4 !   39.4   0.0   1.8e-13   4.7e-10       6      95 ..     598     686 ..     594     689 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.1e-09
   EF-hand_4  13 weifsglkpednkltgdkvapvlknskleedklekiwdladide.dgkldfeefciamrlifdlvngei 80 
                 w i +g  ++  kl+ + ++ ++  s+l+ d l++iw++a +d+ dg ld +   +a+rli    nge+
  CDO69009.1 182 WVISKGDPERTGKLNPQIATRIFSGSNLSPDALARIWEIASVDSkDGLLDRQGVGVALRLIGHAQNGEV 250
                 8888898899999***99*************************6599**************88888765 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 8.3e-14
   EF-hand_4   4 leeleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciam 69 
                 l ++++ k+ +if+    ++  ltg+++  v+ +skl+++ l++iw++adi + g ld  +f++a+
  CDO69009.1 292 LTSHDKAKFRKIFQNSGAQNGCLTGQQAREVFMKSKLPSETLSRIWTMADIRKRGYLDVADFTVAI 357
                 6677889********************************************************986 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 5.4e-10
   EF-hand_4  14 eifsglkpedn.kltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselP 88 
                 ++f +l+p+++ + +g+ v + l+++ l+++   +iwd+adi + g l +eef+ia++l+   + +e  ++Ps lP
  CDO69009.1 411 HVFTSLDPRQRgRAKGEAVRAYLHQAGLSTNAAGRIWDMADIGHKGYLTLEEFTIALHLMK--MRKEGYHLPSALP 484
                 589999998752788999**************************************99973..4555566676666 PP

  == domain 4  score: 39.4 bits;  conditional E-value: 1.8e-13
   EF-hand_4   6 eleikkyweifsglkpedn.kltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpes 95 
                 + e  +y  +f  l+++++ +l +d + p +  ++l+++ ++ iwdlad ++dg+l  ++f++am+li   + g  +++P+++P  l+++s
  CDO69009.1 598 ADERARYDRLFDELDSQKKgYLLSDVAVPFFARANLPNEVMATIWDLADSEHDGRLTRDDFAVAMHLIRQKLAG--RELPTTVPASLLASS 686
                 56888999******98754389999999*****************************************99987..589*****9999887 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.65   1.7e+03      13      63 ..     189     232 ..     185     234 .. 0.71
   2 !    7.6   0.0     0.002       5.1       3      25 ..     332     354 ..     296     374 .. 0.67
   3 !   11.3   0.0   0.00014      0.37       4      68 ..     409     465 ..     406     468 .. 0.79
   4 !   19.3   0.3   4.6e-07    0.0012       6      70 ..     606     662 ..     601     663 .. 0.83
   5 !   13.9   0.0   2.1e-05     0.054       2      31 ..     636     665 ..     635     697 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.65
   EF-hand_7  13 tdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk.dGvisf 63 
                   ++g+l+++    + r+       gs+ls+++l ++++    d+ dG +++
  CDO69009.1 189 PERTGKLNPQI---ATRI-----FSGSNLSPDALARIWEIASVDSkDGLLDR 232
                 55666666666...4554.....56889999999999999877765687776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.002
   EF-hand_7   3 klkeaFkelDtdgdgyldkeell 25 
                  l +++ + D +++gyld++++ 
  CDO69009.1 332 TLSRIWTMADIRKRGYLDVADFT 354
                 33444555555555555555544 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00014
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  + +F +lD +++g+   e ++ +l++       g  ls  +  +++++ D  + G+++++EF  
  CDO69009.1 409 AEHVFTSLDPRQRGRAKGEAVRAYLHQ------AG--LSTNAAGRIWDMADIGHKGYLTLEEFTI 465
                 567899999999999888889866663......33..34467789******************75 PP

  == domain 4  score: 19.3 bits;  conditional E-value: 4.6e-07
   EF-hand_7   6 eaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + F+elD+ + gyl  +  +  ++        ++ +l+ e + ++++  D+ +dG++++d+F  ++
  CDO69009.1 606 RLFDELDSQKKGYLLSDVaVP-FFA-------RA-NLPNEVMATIWDLADSEHDGRLTRDDFAVAM 662
                 56************9999666.776.......34.446678899******************9887 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 2.1e-05
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrki 31 
                 e++ +++++ D+ +dg+l+++++  +++ i
  CDO69009.1 636 EVMATIWDLADSEHDGRLTRDDFAVAMHLI 665
                 567788888999999999999888554433 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.35   8.8e+02       2      19 ..     180     197 ..     179     198 .. 0.88
   2 !    6.1   0.0    0.0036       9.2       2      28 ..     333     359 ..     332     360 .. 0.89
   3 !   10.5   0.0   0.00014      0.37       4      27 ..     445     468 ..     443     470 .. 0.89
   4 ?    2.1   0.0     0.069   1.8e+02       3      17 ..     605     619 ..     603     621 .. 0.90
   5 !   12.7   0.0   2.8e-05     0.071       5      27 ..     641     663 ..     638     665 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
                 HHHHHHHHTTTSSSEEEH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdf 19 
                 +++++++ D  ++Gk++ 
  CDO69009.1 180 VDWVISKGDPERTGKLNP 197
                 68899999*******996 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0036
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l +i+ ++D  + G++d  +f  ++++
  CDO69009.1 333 LSRIWTMADIRKRGYLDVADFTVAITS 359
                 5689*****************998875 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00014
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 +i++++D  + G++++eEf  +l 
  CDO69009.1 445 RIWDMADIGHKGYLTLEEFTIALH 468
                 699****************98875 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.069
                 HHHHHHHTTTSSSEE CS
   EF-hand_1   3 keiFrefDkDgdGkI 17 
                 +++F+e+D  + G++
  CDO69009.1 605 DRLFDELDSQKKGYL 619
                 899**********96 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 2.8e-05
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 i++++D  +dG++++++f  ++ 
  CDO69009.1 641 IWDLADSEHDGRLTRDDFAVAMH 663
                 89*****************9996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.75   1.9e+03      12      29 ..     225     241 ..     218     243 .. 0.84
   2 ?   -0.2   0.0       0.5   1.3e+03       5      27 ..     299     324 ..     297     328 .. 0.78
   3 ?    0.9   0.0      0.23   5.8e+02       4      27 ..     335     358 ..     332     361 .. 0.81
   4 !    7.5   0.0    0.0017       4.4       5      27 ..     446     468 ..     443     474 .. 0.89
   5 ?    2.3   0.1     0.081   2.1e+02       3      17 ..     605     619 ..     603     622 .. 0.88
   6 !    8.8   0.0   0.00064       1.6       5      26 ..     641     662 ..     638     668 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.75
   EF-hand_6  12 dgdGkidaeElrkalrka 29 
                 ++dG +d++ +  alr +
  CDO69009.1 225 SKDGLLDRQGVGVALR-L 241
                 59******99998888.5 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.5
   EF-hand_6   5 aFklfDkd...gdGkidaeElrkalr 27 
                 +F+++ ++    +G+++ ++ r ++ 
  CDO69009.1 299 KFRKIFQNsgaQNGCLTGQQAREVFM 324
                 78888888888999999998877665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.23
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 +++ + D  + G++d +++  a++
  CDO69009.1 335 RIWTMADIRKRGYLDVADFTVAIT 358
                 56778899999*******976665 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0017
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 ++++ D  + G+++ eE+  al 
  CDO69009.1 446 IWDMADIGHKGYLTLEEFTIALH 468
                 78999*************99986 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.081
   EF-hand_6   3 reaFklfDkdgdGki 17 
                 +++F+++D  + G++
  CDO69009.1 605 DRLFDELDSQKKGYL 619
                 689**********97 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.00064
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +++l D ++dG ++++++  a+
  CDO69009.1 641 IWDLADSEHDGRLTRDDFAVAM 662
                 78999*************8777 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   2.6   2.1e-08   5.3e-05       1      75 [.      55     143 ..      55     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.1e-08
         GAT   1 rnnaklLsemLsstepdeellenellkeLyetckamqpriqklieet.....adeed..............llaelLqlNDeLnnvlerYerlk 75 
                 rnna++L+e+L  ++p+   l n++ keL ++ +a+q  i   i            +              lla lL ++++L++ l+ Ye l+
  CDO69009.1  55 RNNAEVLQEVLVYAKPQ--ELRNDVTKELLSRARASQDLIGSQIPWAtteaeK---SrrsattaaqttqeqLLAALLAAHEQLTECLKMYEDLE 143
                 79*************88..679******************9999996444440...1445555555555569999****************987 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.1   2.9e+03      53     105 ..     102     150 ..      70     167 .. 0.47
   2 !    8.4   0.0   0.00086       2.2       8      28 ..     466     486 ..     461     519 .. 0.80
   3 !   14.4   0.0   1.2e-05     0.031       2      51 ..     655     704 ..     654     718 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
        End3  53 taaksksetstgkkakfgdsylsrlGvgsksekgtdfsatkgtdweevrLkre 105
                 +a+ks++ ++t+  + + ++ l  l ++++  + t+  +   +d e v +++e
  CDO69009.1 102 EAEKSRR-SATTAAQTTQEQLLAALLAAHE--QLTECLK-MYEDLERVAIEQE 150
                 2222222.2222233444555555543322..2222221.1234444444444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00086
        End3   8 flHiLnqReeGiriPrevPas 28 
                  lH+++ R+eG+ +P+ +P++
  CDO69009.1 466 ALHLMKMRKEGYHLPSALPPD 486
                 59*****************97 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.2e-05
        End3   2 kDqaLvflHiLnqReeGiriPrevPasLratfekekidydlnserassas 51 
                 +D   v +H+ +q+  G  +P++vPasL a+ ++ +++ +l++++++ as
  CDO69009.1 655 RDDFAVAMHLIRQKLAGRELPTTVPASLLASSSHPEPSPSLSRHESRLAS 704
                 57777889***************************999999776653333 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   5.1e+02       8      44 ..     158     196 ..     154     196 .. 0.73
   2 ?    0.7   0.0      0.18   4.7e+02      35      50 ..     340     355 ..     322     359 .. 0.82
   3 ?    1.7   0.0     0.092   2.4e+02      36      48 ..     451     463 ..     448     473 .. 0.83
   4 ?   -0.8   0.0      0.53   1.4e+03      31      43 ..     607     619 ..     605     620 .. 0.92
   5 !    8.2   0.0   0.00088       2.2      25      52 ..     635     662 ..     629     664 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
   EF-hand_8   8 eelrrilrilglkk.glseee.vdilfrefDtdgdGkis 44 
                 e+l  +l+++   + ++ e   vd++++++D ++ Gk++
  CDO69009.1 158 EKLIQALTAVSEYHpTFEEASlVDWVISKGDPERTGKLN 196
                 66666665555444566666679*************996 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
   EF-hand_8  35 fDtdgdGkisfeEFcv 50 
                 +D+ + G+++  +F v
  CDO69009.1 340 ADIRKRGYLDVADFTV 355
                 5888888888888865 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.092
   EF-hand_8  36 DtdgdGkisfeEF 48 
                 D+ ++G++++eEF
  CDO69009.1 451 DIGHKGYLTLEEF 463
                 6667899999999 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.53
   EF-hand_8  31 lfrefDtdgdGki 43 
                 lf+e+D  ++G++
  CDO69009.1 607 LFDELDSQKKGYL 619
                 8**********97 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00088
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvll 52 
                 +e + ++ +++D ++dG+++ ++F v +
  CDO69009.1 635 NEVMATIWDLADSEHDGRLTRDDFAVAM 662
                 56666777899**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5183.12
//
Query:       CDO69010.1  [L=540]
Description: hypothetical protein BN946_scf184834.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.0   0.1    3.3e-10   39.8   0.1    1.7  1  R3H       R3H domain
    1.7e-07   30.9   0.0    3.7e-07   29.9   0.0    1.6  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   3.7e-14   3.3e-10       4      60 .]     326     384 ..     324     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 3.7e-14
                 HHHHHHHHHHHH-S.--EEE---.--SHHHHHHHHHHHHSSEEEEEE--SS-SEEEEEE CS
         R3H   4 lrvekklaefvkdt.grslefpp.mssyeRriiHelaeaygleseSvGeepkRrvvvtk 60 
                 l+++ ++  f +d+ + +l f   +++ +Rr++H +a++ g++++SvGe+++R+ vvt+
  CDO69010.1 326 LEIYSRILLFKDDPmRDELAFSRtLTAKQRRVVHLVAQKLGVYHYSVGEGDERYAVVTR 384
                 56788888898887678******88********************************96 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   4.1e-11   3.7e-07       1      70 []     138     209 ..     138     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 4.1e-11
                 EEEESETTTSSHHHHHHHHHT..TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk..fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++++n+p++v++e+L ++     +     ++   d+ g+ +g af +F +  dA++ ++alng  ++gr+l+
  CDO69010.1 138 IVIKNIPFNVKRETLLDIIASlsIPTPYAFNYHLDQSGQFRGLAFANFRQAADADAVVAALNGFDVQGRKLR 209
                 78******************955555567777777**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3481.70
//
Query:       CDO69011.1  [L=347]
Description: hypothetical protein BN946_scf184834.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-55  186.1   0.0    1.1e-54  185.7   0.0    1.1  1  Endonuclease_NS  DNA/RNA non-specific endonuclease


Domain annotation for each model (and alignments):
>> Endonuclease_NS  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7   0.0   6.1e-59   1.1e-54      11     223 ..      77     309 ..      68     312 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.7 bits;  conditional E-value: 6.1e-59
                      TTSTTSEEEE-SSEEEEEETTTTEEEEEEEEESCGGGSS-TT--GG-.........--B--TTS-CCSG---HHHCTTS.SSEEEESS-GGG-- CS
  Endonuclease_NS  11 ptsgddkvlfykgfsvsynkerriplwvaenldgasvnasaaerrgp.........sfkadpripqlsfrtqysdyagskgldRGHLaaaadfk 95 
                      +++ +d +l +  ++  y+++ r+p w+ae+l+ as+++sa e r++         +f +d+ ip+  fr++ sdy +s g+dRGH+++aad k
       CDO69011.1  77 EGPISD-LLVRRAYVAGYDRRLRHPAWTAEHLTLASLGKSALEPRNNdeagdransQFMEDQAIPAM-FRAKLSDYFRS-GYDRGHMVPAADAK 167
                      555565.89999********************999999887655555677888889***********.***********.9************* PP

                      SSHHHHHHTTBGGGEEEE-HH.HHCTHHHHHHHHHHHHHCTTS.EEEEEEEEES-ECC-........EEEETT.TTEE--SEEEEEEEEECCTT CS
  Endonuclease_NS  96 fsteanaatfnytNivPQvag.fNqgnWlrlEnlvrklvrkydrklyvvtGpvfvprll........yeligk.nkvavPthfwkvilsedadd 179
                      +s++a+++tf +tNi+PQv + fN+++W+++E+++r+l+++++ ++y++t p++ p+l+        +e+ig+  ++ vPthf kv+l ++ ++
       CDO69011.1 168 MSQAAMDETFLLTNIAPQVGAgFNRHYWAYVEDWCRRLTSSFS-DVYIFTIPLYLPKLDadgkwrvcHEVIGNpPNISVPTHFAKVVLASRPSS 260
                      *****************************************99.************************************************77 PP

                      T.....CEECCEEEEEESSSS-TTS-GGGGB--HHHHHHHHT--TTTTS CS
  Endonuclease_NS 180 k.....gtlnaaafllpnepiaderpltayqvpvdeleeltGldffcnv 223
                             ++++ af+lpn+ i+de++l+++ vpv+++e+++Gl+ f++ 
       CDO69011.1 261 PsrpdvPEISTGAFVLPNAVIPDEAKLESFIVPVEAVERAAGLTLFSDA 309
                      78999999************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2419.20
//
Query:       CDO69012.1  [L=309]
Description: hypothetical protein BN946_scf184834.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   67.0   0.0    3.7e-18   66.4   0.0    1.3  1  MRP-L46   39S mitochondrial ribosomal protein L46
    1.2e-09   38.3   0.1      2e-09   37.6   0.1    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   4.1e-22   3.7e-18       3     119 .]      55     169 ..      53     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 4.1e-22
                 EEEE-B--B--SB-----HHHHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....----HHHHHHHHHHHHHHS...... CS
     MRP-L46   3 ikagliLsRpPvvtrelspfEkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigkpdlrqererndeqeikspksyeea 101
                 ++a+++L R P++tr+++ fE++++ Yq++ ++ l  +f+ +fyfk+g+l e+kf ++++kl+er+     + + ++ +q   ++de  i    s + +
  CDO69012.1  55 LNAAVVLNRSPILTRTPTLFERAYFSYQSRIRRALFNPFPTDFYFKTGSLLEKKF-AKEEKLRERE-AFGGPWTLKRRKQGPTEMDEDGILIASSDQTE 151
                 689****************************************************.8888999997.88899999999999999999999999888888 PP

                 ........----S-SSTT CS
     MRP-L46 102 leedarvikpasRvTeaD 119
                   +++ ++ pa+R+ e D
  CDO69012.1 152 TMGEEPIEPPAPRIHESD 169
                 88899*********9998 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   2.3e-13     2e-09      16     123 ..     182     297 ..     174     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.3e-13
                 E...EEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEE....EEEEEEEEEEEEEEEEEEEEEEEEEEE..EEECSGCSSTSTTT CS
       NUDIX  16 e...vLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaell....ellgrlhylapydgpygdeheilyvfl..eevegelepndene 103
                 e    Ll+r ++++     W +P G++++gE + +AA+R l+EE G++ +++    + +++++  +p++ +++   e++ +fl  + + g+++p+  + 
  CDO69012.1 182 ErnlYLLIRARDHTG-KqvWRFPEGGLQEGEFLHQAALRDLQEECGVNMDTWivgkKPIAVYQPSLPENVKKTLGGELYTFFLkaHILAGQVRPD-GKN 278
                 234467776663333.369************777************9777778899999999999999999998666665555588888998988.999 PP

                 EEEEEEEEHHHHHHHHTHCT CS
       NUDIX 104 vsevrwvpleellkeklaae 123
                 v ++ w++ +e+ +++l+++
  CDO69012.1 279 VTDFAWLTKQEI-EPRLEKD 297
                 999*********.4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2148.54
//
Query:       CDO69013.1  [L=398]
Description: hypothetical protein BN946_scf184834.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-63  214.4   0.2    7.9e-52  176.5   0.0    2.6  3  V-ATPase_H_N  V-ATPase subunit H
    8.8e-43  145.1   0.1    4.2e-42  143.0   0.0    2.1  2  V-ATPase_H_C  V-ATPase subunit H
    7.3e-07   29.0   0.3       0.77    9.9   0.0    5.0  5  Arm           Armadillo/beta-catenin-like repeat
    1.7e-06   27.8   0.1      0.031   14.5   0.0    4.1  4  HEAT          HEAT repeat
    0.00012   21.7   0.0    0.00027   20.5   0.0    1.5  1  Arm_2         Armadillo-like
     0.0036   17.6   0.0       0.14   12.6   0.0    3.1  3  HEAT_2        HEAT repeats
     0.0037   17.1   0.1     0.0068   16.3   0.1    1.4  1  LemA          LemA family
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.091   12.7   0.0    2.2  2  DUF2019       Domain of unknown function (DUF2019)
      0.062   13.2   0.0       0.86    9.5   0.0    2.5  3  Sec7_N        Guanine nucleotide exchange factor in Golgi tra
       0.13   12.4   0.1        9.3    6.5   0.0    2.8  3  RTP1_C1       Required for nuclear transport of RNA pol II C-


Domain annotation for each model (and alignments):
>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.4e-12   4.3e-09       2      55 ..      10      63 ..       9      67 .. 0.88
   2 !  176.5   0.0   4.4e-55   7.9e-52     112     315 .]      64     256 ..      61     256 .. 0.94
   3 ?   -1.9   0.0      0.87   1.6e+03     100     121 ..     299     320 ..     289     349 .. 0.65

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.4e-12
  V-ATPase_H_N  2 vlqelankirarkipWegyvrsqliseedlkliksldkakkeqraklldedgpq 55
                  +l+e+ +kira+++pWegy+r++li++e+l+lik+++ ++ ++ ++l ++dgp+
    CDO69013.1 10 YLDETSAKIRAKPVPWEGYQRAGLITSEELSLIKKVERQPRAKIESLHASDGPT 63
                  78999*********************************9999866666777765 PP

  == domain 2  score: 176.5 bits;  conditional E-value: 4.4e-55
  V-ATPase_H_N 112 llnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve.adgvstlisilrstvanst 207
                   +l++qddf++l+a ++l+ ll+ +k   +    + L+ +l+ L     +++ +  +iav++l+++l++ e+R++++  a +v+ l++il        
    CDO69013.1  64 ILESQDDFVQLKATQILTVLLSSEKSPLQP---QQLRPFLNTLALFVVNPSPNKRDIAVQCLEAILSRPECRQAVWAnASLVGGLVDIL------RH 151
                   6899******************99999999...9999999999994444455566**********************99**********......89 PP

  V-ATPase_H_N 208 rvgiQlqYqvllclWlLsFekkiaeelvkkkelipllvdilrdsvKEKvtRvilatlrNllekaeksskelaavmvqvkllkllenLeerkfsDedi 304
                   +   Q+ Yqv +clWlL+Fe+++ae+++k  ++ipllvd+++ ++KEKv+Rvi+at+rNl++ka+++   ++++m+  +ll+  +nL+ rk++Dedi
    CDO69013.1 152 NPTPQMSYQVGFCLWLLTFEQDVAEQIQKRFDIIPLLVDVAQGAAKEKVIRVIVATFRNLVSKAPQA---NLPAMLVAQLLPFAKNLSGRKWTDEDI 245
                   9*************************96665**********************************99...*************************** PP

  V-ATPase_H_N 305 tedleyLkeeL 315
                    ed+++L +eL
    CDO69013.1 246 VEDIQFLRDEL 256
                   ********998 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.87
  V-ATPase_H_N 100 keeqdpwkpflkllnrqddfiv 121
                   +++++++k++++lln+++d++v
    CDO69013.1 299 DNDYELLKILIRLLNESNDPTV 320
                   3334455555555555554444 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   2.1e+03      35      76 ..     177     217 ..     169     220 .. 0.70
   2 !  143.0   0.0   2.3e-45   4.2e-42       2     112 ..     263     373 ..     262     377 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
  V-ATPase_H_C  35 kleeknfkllkkLiklleeskdktvlavalnDigelvkllpe 76 
                   ++ +k+f+++  L+++ +  ++++v+ v++    +lv+ +p+
    CDO69013.1 177 QI-QKRFDIIPLLVDVAQGAAKEKVIRVIVATFRNLVSKAPQ 217
                   34.445888888888888777888888888888888777765 PP

  == domain 2  score: 143.0 bits;  conditional E-value: 2.3e-45
  V-ATPase_H_C   2 ltsfdeYlaElesgkLewspvHksekFWkenaekleeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehed 98 
                   lt++deY +El sg+L+w+pvH+s+ FWkena++l++++++llk Li+ll+es+d+tvlava +Dig++vk++++gkk+l++l++K+++mel++h++
    CDO69013.1 263 LTTYDEYRSELLSGHLSWTPVHESDLFWKENATRLNDNDYELLKILIRLLNESNDPTVLAVASHDIGQYVKHYERGKKILTDLGGKTRVMELMSHPN 359
                   8************************************************************************************************ PP

  V-ATPase_H_C  99 eevkyeALkavqkl 112
                   ++v+y+AL +vq+l
    CDO69013.1 360 PDVRYQALISVQRL 373
                   ************97 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7     3e+03       9      27 ..      72      90 ..      68      92 .. 0.79
   2 ?    2.7   0.0     0.081   1.5e+02       2      23 ..     129     151 ..     128     160 .. 0.86
   3 !    9.9   0.0   0.00043      0.77      13      40 ..     184     212 ..     176     213 .. 0.93
   4 !    6.9   0.0    0.0037       6.6      13      32 ..     304     324 ..     301     325 .. 0.87
   5 ?    2.8   0.0     0.075   1.3e+02      17      33 ..     351     367 ..     338     374 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
                HHTTHHHHHHHHTTTSSHH CS
         Arm  9 ieaGavppLvrLLssedee 27
                +++ a ++L  LLsse+  
  CDO69013.1 72 VQLKATQILTVLLSSEKSP 90
                67778899999***98865 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.081
                 HHHHHHHH.HTTHHHHHHHHTTT CS
         Arm   2 senkdavi.eaGavppLvrLLss 23 
                 +e+++av+ +a  v  Lv+ L++
  CDO69013.1 129 PECRQAVWaNASLVGGLVDILRH 151
                 799*****999999999999995 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00043
                 HHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLs.sedeevqeeAawALsNLa 40 
                 ++p Lv+  +   +e+v ++++++ +NL 
  CDO69013.1 184 IIPLLVDVAQgAAKEKVIRVIVATFRNLV 212
                 89**************************7 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0037
                 HHHHHHHHTT.TSSHHHHHHH CS
         Arm  13 avppLvrLLs.sedeevqeeA 32 
                  +++L+rLL+ s d++v+ +A
  CDO69013.1 304 LLKILIRLLNeSNDPTVLAVA 324
                 6899************99877 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.075
                 HHHHTTTSSHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAa 33 
                  ++L+s+++++v+ +A+
  CDO69013.1 351 VMELMSHPNPDVRYQAL 367
                 589**********9996 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   3.3e+03       9      29 ..      65      85 ..      63      86 .. 0.84
   2 !    7.1   0.0    0.0042       7.5      11      29 ..     109     127 ..      99     128 .. 0.85
   3 ?    0.3   0.0      0.66   1.2e+03       1      20 [.     304     324 ..     304     334 .. 0.80
   4 !   14.5   0.0   1.7e-05     0.031       5      28 ..     351     374 ..     349     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
                HT-SSHHHHHHHHHHHHHHHH CS
        HEAT  9 lsDpspeVReaAakaLgalae 29
                l++++ +V   A + L+ l++
  CDO69013.1 65 LESQDDFVQLKATQILTVLLS 85
                678999999999999998875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0042
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                  psp+ R+ A+++L a+++
  CDO69013.1 109 NPSPNKRDIAVQCLEAILS 127
                 599************9986 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.66
                 HHHHHHHHH.T-SSHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaA 20 
                 ll +l++ll ++++p V + A
  CDO69013.1 304 LLKILIRLLnESNDPTVLAVA 324
                 688999***777888876655 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 1.7e-05
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 +++l+s+p+p+VR+ A+ ++ +l+
  CDO69013.1 351 VMELMSHPNPDVRYQALISVQRLC 374
                 7899****************9999 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00027      14      82 ..     305     374 ..     294     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
       Arm_2  14 lekllalLkssedpliqeialltlgns.aaysvnqdiirdlggitiianllsksnaevkekalnalnnls 82 
                 l+ l+ lL+ s+dp++  +a   +g   + y   ++i+ dlgg t + +l+s++n+ v+ +al+ ++ l 
  CDO69013.1 305 LKILIRLLNESNDPTVLAVASHDIGQYvKHYERGKKILTDLGGKTRVMELMSHPNPDVRYQALISVQRLC 374
                 678999*******************8537899********************************998765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.29   5.3e+02      11      58 ..      67     125 ..      63     148 .. 0.55
   2 ?   -2.4   0.0       3.5   6.3e+03      30      42 ..     181     194 ..     142     209 .. 0.57
   3 !   12.6   0.0   7.8e-05      0.14       3      58 ..     307     373 ..     305     395 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.29
      HEAT_2  11 dpdpevrraairaLg........rignpealpaLvell...ededpavRraaaeaLgai 58 
                 + d+ v+ +a + L          +++++++p L  l+    +++p+ R  a++ L ai
  CDO69013.1  67 SQDDFVQLKATQILTvllsseksPLQPQQLRPFLNTLAlfvVNPSPNKRDIAVQCLEAI 125
                 55666666666666654444332233334433333333233666666666666666554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
      HEAT_2  30 p.ealpaLvelled 42 
                 + +++p+Lv++++ 
  CDO69013.1 181 RfDIIPLLVDVAQG 194
                 24677777777743 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 7.8e-05
      HEAT_2   3 aLlqalendpdpevrraairaLgri.gnp..........ealpaLvellededpavRraaaeaLgai 58 
                  L+ +l ++ dp v + a + +g++ ++                + el+++++p+vR++a  +  ++
  CDO69013.1 307 ILIRLLNESNDPTVLAVASHDIGQYvKHYergkkiltdlGGKTRVMELMSHPNPDVRYQALISVQRL 373
                 68999999***************642443455555555566999****************9888765 PP

>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.8e-06    0.0068       3      47 ..     172     215 ..     171     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.8e-06
        LemA   3 sqidvqlkrRaDlipnLvetvkgyakhEketleevteaRakaaea 47 
                 +++  q+++R+D+ip Lv++++g+ak Ek +   v+  R+ +++a
  CDO69013.1 172 QDVAEQIQKRFDIIPLLVDVAQGAAK-EKVIRVIVATFRNLVSKA 215
                 57999******************875.888888888888888443 PP

>> DUF2019  Domain of unknown function (DUF2019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.5     9e+02      78     101 ..     118     141 ..     108     143 .. 0.88
   2 ?   12.7   0.0   5.1e-05     0.091      17      68 ..     322     368 ..     306     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHT-TTHHHHHHHHH CS
     DUF2019  78 ArkqleaiasskelpqagdAgmsl 101
                 A + leai s  e+ qa+ A+ sl
  CDO69013.1 118 AVQCLEAILSRPECRQAVWANASL 141
                 7899*************9998877 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.1e-05
                 HHHTT-HHHHHHHHHHHHHHHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHHH CS
     DUF2019  17 AllkleiakynrlfakmkevsaELkrrdGDqRraLlsLyehpnvqvRlkAAk 68 
                 A+ + +i++y + +++ k++ ++L    G  ++ +++L++hpn  vR +A  
  CDO69013.1 322 AVASHDIGQYVKHYERGKKILTDLG---G--KTRVMELMSHPNPDVRYQALI 368
                 7788999*************99994...3..46689************9965 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00048      0.86      81     147 ..      72     137 ..      51     138 .. 0.84
   2 ?   -2.8   0.0         3   5.3e+03      64      93 ..     183     212 ..     145     217 .. 0.68
   3 ?    0.4   0.0      0.31   5.5e+02      64      90 ..     303     329 ..     283     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00048
      Sec7_N  81 vferslrivllLlkkfrseLk.tEievflsllilillesdsslwqrvlaLeilrrlcsdpqllvelyl 147
                 v + +++i+ +Ll++ +s L+ +++  fl+ l l+++  + s ++r +a+++l+ ++s p++ + ++ 
  CDO69013.1  72 VQLKATQILTVLLSSEKSPLQpQQLRPFLNTLALFVV--NPSPNKRDIAVQCLEAILSRPECRQAVWA 137
                 55668999999**99999997588************5..45889***************998877776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
      Sec7_N  64 klcplLlknlsespsfpvferslrivllLl 93 
                 +++plL+ +++   + +v+ +++ ++ +L+
  CDO69013.1 183 DIIPLLVDVAQGAAKEKVIRVIVATFRNLV 212
                 455666666655555555555555555555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.31
      Sec7_N  64 klcplLlknlsespsfpvferslrivl 90 
                 +l++ L+++l+es++++v+ ++ + + 
  CDO69013.1 303 ELLKILIRLLNESNDPTVLAVASHDIG 329
                 678889999988888888877665555 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0052       9.3      47      74 ..      63      90 ..      32     127 .. 0.78
   2 ?   -3.5   0.0       6.3   1.1e+04      64      85 ..     188     210 ..     184     219 .. 0.60
   3 ?    2.8   0.0     0.073   1.3e+02       3      29 ..     350     376 ..     349     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0052
     RTP1_C1 47 eaLkdedsYvYLnaikgLvaLadvfpee 74
                + L+ +d++v L+a ++L+ L +  ++ 
  CDO69013.1 63 TILESQDDFVQLKATQILTVLLSSEKSP 90
                5799*****************9987665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.3
     RTP1_C1  64 LvaLadvf.peevlklLleeyee 85 
                 Lv +a+   +e+v++ +++ +++
  CDO69013.1 188 LVDVAQGAaKEKVIRVIVATFRN 210
                 55555533267788888877744 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.073
     RTP1_C1   3 ealkdlqdpllpvrahglvlLrkliek 29 
                 ++++ ++ p + vr ++l++ ++l+++
  CDO69013.1 350 RVMELMSHPNPDVRYQALISVQRLCHA 376
                 5789999***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3039.53
//
Query:       CDO69014.1  [L=397]
Description: hypothetical protein BN946_scf184834.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-36  124.1   0.0      8e-36  123.8   0.0    1.0  1  p450          Cytochrome P450
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.22   10.8   0.0    1.3  1  Peptidase_M9  Collagenase


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   8.9e-40     8e-36       1     340 [.      36     379 ..      36     387 .. 0.84

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 8.9e-40
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHH CS
        p450   1 PpgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklR 99 
                 Pp+p+   ++g+   + r     ev+++ +k+yg++f l + ++++v+++++ a+ke++ k++++ s+rp  +l+ +    +     +++ g++  k+R
  CDO69014.1  36 PPSPPSDAILGHYRIFPR-SYQAEVFFQWSKRYGDVFYLEILGRKIVIVNSYAAAKELMDKRSANYSDRPFFPLFMN--LGWGVSVTFLKYGPQFFKQR 131
                 677777778888888875.677889*************************************999999988888887..4577777777777******* PP

                 HHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH...HHHCHHHHCCCC CS
        p450 100 rfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss...llskssvqllll 194
                 r+l + + ++    +++++ +eea++++++l +    +   d   l+ ++   vi++i++g+++   +d+   e++k++e++s        + + ++++
  CDO69014.1 132 RILQQYFSKQ-EVvRFRPVHTEEAHKMLRNLLD---RP--KDFDWLIRRYGAAVIMKIAYGHEIV-SDDD---EYIKMTENVSLahvDAGDPGTAPVDF 220
                 ********99.4447888888887777776654...45..35568899**************977.4555...3555555554443377888999**** PP

                 CHHHTCCSCHH.....HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCT.SSSSHHHHHHHHHHHHHHHHHH.........H CS
        p450 195 fpllkylptkl.....lrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkge.sklsdeelaatvlellfaGvdT.........t 278
                 fp+l+ylp+++     +r +++   ++ +++d  +e+ ++++ +  +   +fl a l++   k +   + s ++l++ ++ ++++G +T         t
  CDO69014.1 221 FPFLQYLPSWFpgcwfNRVVHKWSWAIRKFHDYPFEQVKRQMANG-HAAPSFLLAYLEEF-SKPNYkGEHSLDDLKHAAGAIYAGGAETvrlsellifT 317
                 ********974333327888888889*******************.78999999999996.333334689*******************8888888888 PP

                 HHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTT CS
        p450 279 sstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvpl 340
                  st+  + + ++ +P v ++ +eEid v+g kr p++dd+++lpy +a+ +E+LR +pvvpl
  CDO69014.1 318 YSTINTFVLAMVLHPYVLRRAQEEIDMVIGVKRLPDFDDRENLPYIEAIFQEVLRWRPVVPL 379
                 9************************************************************5 PP

>> Peptidase_M9  Collagenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.4e-05      0.22     206     272 ..     294     358 ..     276     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.4e-05
  Peptidase_M9 206 ksnqaaiseakeeryslskvlettYdsddtriYrygYlavrymlekhredvdqllallragdykeaa 272
                   k+   ai    +e+++ls++l  tY++ +  ++  + ++  y+l + +e++d +++  r  d+++ +
    CDO69014.1 294 KHAAGAIYAGGAETVRLSELLIFTYSTIN--TFVLAMVLHPYVLRRAQEEIDMVIGVKRLPDFDDRE 358
                   67778999999*****************9..999*****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2866.95
//
Query:       CDO69015.1  [L=285]
Description: hypothetical protein BN946_scf184834.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 2103.29
//
Query:       CDO69016.1  [L=1289]
Description: hypothetical protein BN946_scf184834.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.51
# Mc/sec: 7671.97
//
Query:       CDO69017.1  [L=454]
Description: hypothetical protein BN946_scf184834.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-70  235.4   0.0    1.1e-69  234.6   0.0    1.4  1  Tubulin          Tubulin/FtsZ family, GTPase domain
    5.2e-47  159.1   0.6      1e-46  158.2   0.1    1.7  2  Tubulin_C        Tubulin C-terminal domain
      0.001   19.3   0.0     0.0041   17.4   0.0    2.0  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain
     0.0024   17.6   0.0     0.0043   16.7   0.0    1.4  1  Tubulin_3        Tubulin domain
  ------ inclusion threshold ------
      0.099   11.8   0.0       0.14   11.3   0.0    1.2  1  Tubulin_2        Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6   0.0     3e-73   1.1e-69       1     196 [.       4     213 ..       4     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.6 bits;  conditional E-value: 3e-73
                 EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCC..CTT CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkeg..agn 85 
                 ei+++++GqcGnq+g+ +w+ l+ ehgi+++g          d++++fF++ ++++yipr++++d++p+v+n i +++  +l+np++++++k+g  agn
  CDO69017.1   4 EIVTVQLGQCGNQMGSVYWQRLCAEHGINKEGileewateggDRKDVFFYQADDEHYIPRAILVDLEPRVINGILTSPyaNLYNPENIFVSKDGggAGN 102
                 79***************************999*************************************************************999*** PP

                 C--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SE CS
     Tubulin  86 ngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesda 183
                 n+a+gy+  g+++ ee++e++++e+e++dsl+gf++++s++GGTGSGlg+++le+l++++pk+l++t++v+P+ ++ +vvv+pyna+l+lk+l +++d+
  CDO69017.1 103 NWAQGYSA-GERIYEEVMEMVDREAEGSDSLEGFMLMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNaQEGDVVVQPYNAMLTLKRLTNHADS 200
                 *******9.*****************************************************************999********************** PP

                 EEEEEHHHHHCCS CS
     Tubulin 184 vividNdaLlkil 196
                 v+v+dN aL +i+
  CDO69017.1 201 VVVLDNGALTRIS 213
                 *********9985 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   7.5e+03      32      46 ..     222     236 ..     215     242 .. 0.73
   2 !  158.2   0.1   2.8e-50     1e-46       1     124 [.     263     390 ..     263     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
                 HTCSGGGBSSSTSTT CS
   Tubulin_C  32 allepknimvkvdpr 46 
                   ++++n++v++ + 
  CDO69017.1 222 PSFDQTNQLVSTVMA 236
                 568888888887665 PP

  == domain 2  score: 158.2 bits;  conditional E-value: 2.8e-50
                 TTC-EEEEEEESSSCTT...TTTCS-HHHHHHHHHTCSGGGBSSSTSTTT.SSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEE CS
   Tubulin_C   1 PrlhFlltsyaPlvsae...kaavektsvqdvtrallepknimvkvdprk.gkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnk 95 
                 Pr+hFl+tsy+P++s++   ++ +++t+v dv+r+ll+pkn mv+++p+k  +y++i+++i+Gdv+p++v++++ ri+e++ a+f++W+p++i+val++
  CDO69017.1 263 PRCHFLMTSYTPFTSDQidkAKPIRRTTVLDVMRRLLQPKNCMVSTSPSKtACYISILNIIQGDVDPTDVHQSLLRIRERQLANFIPWGPASIQVALTR 361
                 9***************99877889***********************99879*********************************************** PP

                 CECT-TTTSSCEEEEEEEEGGGHHHHHHH CS
   Tubulin_C  96 kspyvkkqskvsvlmlaNttsiaelfkrl 124
                 +spyv+++++vs+lmlaN+ts+a+lfkr+
  CDO69017.1 362 RSPYVQTNHRVSGLMLANHTSVASLFKRM 390
                 ***************************97 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-06    0.0041       1      66 [.       3      70 ..       3      90 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
  Misat_Tub_SegII  1 rEivtlqlGnyaNyvgtHfWN..tQesyftydeeeee...sevd.hdvlfregetkqgqvtytPRllivDlk 66
                     rEivt+qlG+  N +g+ +W     e+ ++++   ee   +  d +dv f     +  ++ y+PR+++vDl+
       CDO69017.1  3 REIVTVQLGQCGNQMGSVYWQrlCAEHGINKEGILEEwatEGGDrKDVFFY----QADDEHYIPRAILVDLE 70
                     8*******************7323455555544444444322231344444....467899*********97 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-06    0.0043      43     173 ..     108     236 ..      86     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-06
   Tubulin_3  43 wsvGeeLfeeldkehdlldrdlrpfaeecdqlrglqvftgvddaWG.GfaakylerlrdeygkksilvWvl..aleekl.kkkkkaklerklkklnkar 137
                 +s+Ge ++ee+    +++dr+    ae +d+l+g+ ++ ++    G G ++  lerl d ++kk i ++ +  + +e+    +  + +    + +n+a 
  CDO69017.1 108 YSAGERIYEEV---MEMVDRE----AEGSDSLEGFMLMHSIAGGTGsGLGSFLLERLNDKFPKKLIQTYSVfpNAQEGDvVVQPYNAMLTLKRLTNHAD 199
                 44455444443...5788887....799************998877699999*************9998763433333303333333333344469999 PP

   Tubulin_3 138 slkelseqaslyvPiakls.daeseWhtsaLlssale 173
                 s+  l + a + +   +l+ ++ s  +t  L+s+++ 
  CDO69017.1 200 SVVVLDNGALTRISADRLHvQTPSFDQTNQLVSTVMA 236
                 9988888777777766666233334445556666554 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05      0.14     154     226 ..     131     196 ..     105     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
   Tubulin_2 154 eglnvfVvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdvfplnkeggervkaNayaaLkELna 226
                 ++  ++++ S+aGGTGSG+   ++  l++ ++++     i  + + P++   ++++      Na+ +Lk L +
  CDO69017.1 131 SLEGFMLMHSIAGGTGSGLGSFLLERLNDKFPKKL----IQTYSVFPNA---QEGDVVVQPYNAMLTLKRLTN 196
                 445577889*********99888888888888877....6777778887...333444445566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3192.67
//
Query:       CDO69018.1  [L=124]
Description: hypothetical protein BN946_scf184834.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.7   0.2    1.8e-12   47.1   0.2    1.3  1  HTH_3     Helix-turn-helix
      1e-10   41.9   1.5    3.5e-05   24.2   0.1    2.8  3  MBF1      Multiprotein bridging factor 1
    6.8e-07   29.5   0.0    1.2e-06   28.7   0.0    1.4  1  HTH_31    Helix-turn-helix domain
    0.00014   21.8   0.0    0.00034   20.6   0.0    1.6  2  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.022   14.6   0.1      0.033   14.0   0.1    1.3  1  HTH_25    Helix-turn-helix domain
      0.068   13.1   0.1       0.13   12.2   0.1    1.4  1  HTH_37    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.2     6e-16   1.8e-12       1      52 [.      58     109 ..      58     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 6e-16
                 HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3   1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52 
                 ++++R ++ lsq++ A+k++ ++s ++++E+G+++P++++l kl+++Lgv+l
  CDO69018.1  58 IQQARMEKQLSQKDCAQKINEKPSVLQDYESGRAIPNPQILAKLERVLGVKL 109
                 789***********************************************98 PP

>> MBF1  Multiprotein bridging factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   2.2e-06    0.0067       2      26 ..       4      28 ..       3      31 .. 0.95
   2 !   24.2   0.1   1.2e-08   3.5e-05      51      72 .]      29      50 ..      28      50 .. 0.92
   3 ?   -2.6   0.0       2.7   8.1e+03      53      62 ..      94     103 ..      88     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
        MBF1  2 DWdsvtvigkkarkatvaksesaln 26
                DWds+ vig+ka+ ++v+++e++ln
  CDO69018.1  4 DWDSKLVIGQKAKAPKVTRKETDLN 28
                9************99********99 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.2e-08
        MBF1 51 aqegqnlaKlDreteelkpkkV 72
                ++++q++aKlDre+e+++p+kV
  CDO69018.1 29 GTDHQRIAKLDRENEVAPPPKV 50
                469******************8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.7
        MBF1  53 egqnlaKlDr 62 
                 + q laKl+r
  CDO69018.1  94 NPQILAKLER 103
                 5677899998 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.1e-10   1.2e-06       3      56 ..      55     107 ..      53     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.1e-10
      HTH_31   3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl 56 
                 G   +++R +  Lsq++ A+ ++  +s l ++E+Gr  +p p+ l++l r+lg+
  CDO69018.1  55 GKAIQQARMEKQLSQKDCAQKINEKPSVLQDYESGRA-IPNPQILAKLERVLGV 107
                 77789********************************.7**************8 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   4.6e+03      22      36 ..      28      42 ..      22      50 .. 0.66
   2 !   20.6   0.0   1.1e-07   0.00034       1      55 [.      55     108 ..      55     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
      HTH_19 22 lgisrskisaiEngk 36
                +g++  +i+++  ++
  CDO69018.1 28 NGTDHQRIAKLDREN 42
                677777777775555 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.1e-07
      HTH_19   1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid 55 
                 G+ +++aR e++l+q++ a+++   +s +  +E+g+   p++  l k+ + lg+ 
  CDO69018.1  55 GKAIQQARMEKQLSQKDCAQKINEKPSVLQDYESGRA-IPNPQILAKLERVLGVK 108
                 899**********************************.********999999986 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05     0.033       2      34 ..      58      90 ..      57     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEedd 34
                 ++aR++++ls ++ a++++ ++++l+  E+++
  CDO69018.1 58 IQQARMEKQLSQKDCAQKINEKPSVLQDYESGR 90
                589************************999984 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.3e-05      0.13      21      54 ..      56      89 ..      52      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                HHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT CS
      HTH_37 21 laiaeliekrelsqseaaqllgiaqPkvsrllrg 54
                +ai++ + +++lsq++ aq+ + + + + + + g
  CDO69018.1 56 KAIQQARMEKQLSQKDCAQKINEKPSVLQDYESG 89
                78********************999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 918.15
//
Query:       CDO69019.1  [L=446]
Description: hypothetical protein BN946_scf184834.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-105  351.7   0.0   5.3e-105  351.1   0.0    1.3  1  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
    0.00038   20.3   0.7    0.00078   19.3   0.7    1.5  1  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do
  ------ inclusion threshold ------
      0.084   13.1   1.1       0.17   12.1   1.1    1.5  1  Pdase_M17_N2     M17 aminopeptidase N-terminal domain 2


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.1   0.0  8.8e-109  5.3e-105       1     308 [.     146     446 .]     146     446 .] 0.93

  Alignments for each domain:
  == domain 1  score: 351.1 bits;  conditional E-value: 8.8e-109
                    HHHHHHHHS-TTTS-HHHHHHHHHHHHTCCTEEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SSTTSEEEEEEEEEEEEEE-TTSS CS
  Peptidase_M17   1 nlardlvntpaneltpeklaeeaeelakeagkvevevldeeeleekgmgallaVgkgSeeepprlveleykgakekekklalVGKGitfDtGGlsl 96 
                    nlar+l++ pan++tp+++ e++++  +   +vev v+d e++++kgm+ +l+V+kg+ +ep++++e++ykga++++ +l++VGK+itfD+GG+sl
     CDO69019.1 146 NLARTLMELPANIITPTAFTERIKAEFAGIPNVEVIVRDAEWAAQKGMNTFLSVTKGT-SEPAKFLEIHYKGAAPDATPLVFVGKAITFDSGGISL 240
                    69********************9975344446*************************9.56*********************************** PP

                    --HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEEEE CS
  Peptidase_M17  97 KpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdlivd 192
                    Kp+a+m+ m++DmgGAA+v++a+ a+a+l++p+n+v+++pl+eNm+++ a kpgd++ amnGk+ve++nTDaEGRL+L+Dal+y ++++kp++++d
     CDO69019.1 241 KPAAGMSLMRGDMGGAATVCAAALAIAQLRVPINLVVLAPLTENMPGPAANKPGDIVYAMNGKSVEIDNTDAEGRLILSDALYYGSTEYKPHTLID 336
                    *************************************************************************************9999******* PP

                    EE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSSTHHHHHHHHHHTTSSECGEEEEE-TTT CS
  Peptidase_M17 193 vATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrragaitAalFLkefvketpWaHlDiagt 288
                    vATLTg++ + lG+ ++g+f+n+d+l++el++age++ +r+wr+pl+eey  q+ s+ aDl+n+      + +  a   +e    ++WaH+Diag+
     CDO69019.1 337 VATLTGSMDYGLGEVYSGVFTNSDSLWNELHDAGEHEYDRFWRMPLDEEYGPQIYSSNADLCNSFV----EGVEPADGAEEPS--IRWAHVDIAGS 426
                    ***************************************************************988....3344444446666..78********* PP

                    TES.BTTB.S...EE--TTHH CS
  Peptidase_M17 289 alkekealkke.kgatGvgvr 308
                    + +++++   + kg+tG+++r
     CDO69019.1 427 MEASRGYAY-QeKGMTGRPTR 446
                    965544444.45******987 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.7   1.3e-07   0.00078      58     120 ..      35     101 ..      17     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-07
  Peptidase_M17_N  58 VGLGkeee.....ltaealrkaagaaaralkgakvttiavalplegknsd.ekaeaaaegallglYrfd 120
                        LG++ +       +e +rka+g+a+++++++  ++++ +    ++ ++ + a+aaa +a+l++Y+f+
       CDO69019.1  35 ASLGEKFAqkkcpERREVVRKAVGSAVKKVRDLDLGEAVHVSE--VRVDAsADAHAAAVAAHLAAYKFT 101
                      5566555555566899*********************988888..66666689***************7 PP

>> Pdase_M17_N2  M17 aminopeptidase N-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   2.9e-05      0.17      54     120 ..      33     104 ..      13     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
  Pdase_M17_N2  54 tvavlptkaSRhNcpaRpdaitklVkaavkeaked......ealdvlvcesekalavatAvAraasksFsaKk 120
                    +a+l +k+    cp R  ++ k+V +avk++++       ++  v v  s++a a+a+A   aa k F+ K+
    CDO69019.1  33 ALASLGEKFAQKKCPERREVVRKAVGSAVKKVRDLdlgeavHVSEVRVDASADAHAAAVAAHLAAYK-FTLKT 104
                   48999999999*********************98789854444444444555555555555555555.88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3206.84
//
Query:       CDO69020.1  [L=278]
Description: hypothetical protein BN946_scf184834.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-31  107.5   0.0    2.3e-30  105.1   0.0    2.0  2  NAD_binding_7   Putative NAD(P)-binding
    1.2e-22   79.3   1.0    1.9e-22   78.7   1.0    1.3  1  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
    6.3e-14   51.1   0.5    1.2e-13   50.3   0.5    1.4  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
     0.0012   18.3   0.1      0.016   14.6   0.0    2.4  2  ThiF            ThiF family


Domain annotation for each model (and alignments):
>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   5.1e-34   2.3e-30       1     104 []      15     129 ..      15     129 .. 0.91
   2 ?   -0.4   0.0      0.35   1.6e+03      15      27 ..     187     199 ..     186     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 5.1e-34
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapev.....keele.......elvklaeeel..ekdlegadlviaatddrelneriaeaa 82 
                    l+++lk+k+vl+vGgG+vA  +++++l a+a++t++ p++     +   +       ++++++++ +  ++dl+g+d+v++a+dd e +++i++++
     CDO69020.1  15 LAWQLKDKHVLIVGGGDVASGRIESVLVADAHITLIVPRSglhplT---QhfltaapDRITHHDRVFagPQDLDGVDMVLTAIDDVEASRHICALC 107
                    79*************************************7764440...255556669999999999888************************** PP

  NAD_binding_7  83 karrilvnvadkpelcdfifpa 104
                    ++rri+vnvad p+ cdf+f++
     CDO69020.1 108 RERRIPVNVADVPPSCDFYFGS 129
                    ********************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
  NAD_binding_7  15 gGevAarkvrkll 27 
                    gGev+ r++r ++
     CDO69020.1 187 GGEVGKRRMRWMV 199
                    8*******99776 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   1.0   4.2e-26   1.9e-22       1      68 []     162     232 ..     162     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 4.2e-26
  Sirohm_synth_C   1 PdnlgaAiekvgkLRkkLReiapdq..eegpkRMkWmskvcdswsleelaeldeedmekLl.emyekgkvp 68 
                     P+++ +Aie+vg+LR+kL+e+ap++  e g++RM+Wm ++c sw++e+la ld+++m +Ll e++ek++vp
      CDO69020.1 162 PEHAADAIERVGELRTKLKERAPGVggEVGKRRMRWMVDICSSWDMEDLAMLDDKMMARLLdEGWEKNQVP 232
                     78999*********************99****************************************997 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.5   2.6e-17   1.2e-13       2      27 ..     134     159 ..     133     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.6e-17
  Sirohm_synth_M   2 GpLQIaiSTnGksPrLAaliRreier 27 
                     GpLQ++iSTnG sP+LA+ iRr+ie+
      CDO69020.1 134 GPLQVMISTNGRSPKLANVIRRRIEA 159
                     9***********************96 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.036   1.6e+02      15      31 ..      18      34 ..      10      50 .. 0.85
   2 !   14.6   0.0   3.5e-06     0.016      93     137 ..      67     114 ..      56     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.036
                HHHTSEEEEE--SHHHH CS
                xxxxxxxxxxxxxxxxx RF
        ThiF 15 kLrdskvllvGaGglGs 31
                +L+d++vl+vG G + s
  CDO69020.1 18 QLKDKHVLIVGGGDVAS 34
                79*********998765 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.5e-06
                 EES-CCG.CC..S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EE CS
                 xxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  93 vteritd.et..vleellesvDlVvdalDniearrlvnracvkkgipl 137
                  ++rit  +   +  + l +vD+V+ a+D +ea r++  +c++++ip+
  CDO69020.1  67 APDRITHhDRvfAGPQDLDGVDMVLTAIDDVEASRHICALCRERRIPV 114
                 55666653334324455899**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1900.16
//
Query:       CDO69021.1  [L=169]
Description: hypothetical protein BN946_scf184834.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   12.7   5.7       0.38   10.1   0.0    2.6  2  DUF4191   Domain of unknown function (DUF4191)
      0.076   12.8   5.8       0.09   12.5   5.8    1.1  1  AMO       Ammonia monooxygenase
       0.75   10.2   6.7        6.8    7.1   3.7    2.7  2  DUF4149   Domain of unknown function (DUF4149)


Domain annotation for each model (and alignments):
>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.0    0.0066        39      29      74 ..      64     109 ..      54     118 .. 0.60
   2 ?   10.1   0.0   6.3e-05      0.38      51      87 ..     129     165 ..     120     169 .] 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0066
     DUF4191  29 llaaflvvvvvfvvlglllgs..lilllilgillgllvalivltrrae 74 
                  ++a++      v++g++l +  li   i+ +++g  + +++l++ra+
  CDO69021.1  64 SIGAVVQKNH--VTMGFVLLNwmLIADAIVDVVVGSYIWFFTLGERAH 109
                 3334444444..445555443024555688899999999999998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.3e-05
     DUF4191  51 illlilgillgllvalivltrraekaayaqiegqpGa 87 
                 i+  +  i++ +l+ ++v++rr e+  +++i+ + G 
  CDO69021.1 129 IYGFMAIIVALFLASMCVIKRREEEERFKKIDAKRGG 165
                 444444445556889*****************99996 PP

>> AMO  Ammonia monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.8   1.5e-05      0.09      97     215 ..      26     144 ..       5     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
                 HHHTTTTTS---HHHH-----HHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHGGGG-EEEE..TTEEEEHHHHHHHHS-----------T CS
         AMO  97 ryfnfygwtyfPvnlvfPstlipsalvldvvlllsksylltalvGglafgllfyPanWpllapfhlpvea..egvllsladligfeyvrtgtPeyirlv 193
                  + + + +    +n+++ + +++++lvl + +ll+  + + a+v     ++ f   nW l+a   + v        ++l +   +  v +++P    ++
  CDO69021.1  26 VFSEIWRMPNLMINFTLSNDMLTGGLVLGIFFLLTFVLSIGAVVQKNHVTMGFVLLNWMLIADAIVDVVVgsYIWFFTLGERAHYGKVYSALPRDT-II 123
                 556678888889*************************************************99877766521555688999999999999998754.34 PP

                 TTTTTSSTTT---SCCCHHHHH CS
         AMO 194 ekGtlrtfgkdvvpvaaffsgf 215
                 e    + +g  ++ va f++++
  CDO69021.1 124 EIQ-DKIYGFMAIIVALFLASM 144
                 432.245555666666666655 PP

>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.1      0.23   1.4e+03       4      16 ..      50      62 ..       5      65 .. 0.57
   2 ?    7.1   3.7    0.0011       6.8       7      57 ..      95     149 ..      47     163 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.23
     DUF4149  4 glllGsqlwvtfv 16
                gl lG+ + +tfv
  CDO69021.1 50 GLVLGIFFLLTFV 62
                3444444444444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
     DUF4149   7 lGsqlwvtfvv....apvlfrsLprhqfgelqsklFplyfglglalsvlllltev 57 
                 +Gs +w+           ++++Lpr++  e+q k++ +++ + +++++ + +   
  CDO69021.1  95 VGSYIWFFTLGerahYGKVYSALPRDTIIEIQDKIYGFMAIIVALFLASMCVIKR 149
                 3334444333333321123555799999999999999999998888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1251.12
//
Query:       CDO69022.1  [L=583]
Description: hypothetical protein BN946_scf184834.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.4e-108  360.9   1.7      4e-53  180.7   1.4    2.6  2  RNA12           RNA12 protein
    1.6e-06   28.3   0.1     0.0018   18.2   0.0    2.5  2  ATPase_2        ATPase domain predominantly from Archaea
    7.3e-05   23.2   1.4    0.00056   20.3   1.3    2.5  1  AAA_16          AAA ATPase domain
     0.0017   18.0   0.0     0.0062   16.1   0.0    1.9  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0048   17.1   0.1      0.018   15.2   0.0    2.0  1  AAA_33          AAA domain
     0.0076   16.5   0.7      0.047   14.0   0.1    2.5  2  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.029   13.4   0.0    1.4  1  AAA_6           Hydrolytic ATP binding site of dynein motor r
       0.02   15.3   0.3       0.23   11.9   0.0    2.5  2  AAA             ATPase family associated with various cellula
       0.21   11.7   1.3       0.81    9.8   0.1    2.6  3  NYD-SP28_assoc  Sperm tail C-terminal domain
       0.33   10.7   6.2       0.29   10.9   2.9    2.3  2  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   1.4   2.2e-56     4e-53       1     233 [.      45     354 ..      45     365 .. 0.88
   2 !  178.4   0.0   1.1e-55     2e-52     272     443 ..     360     531 ..     352     532 .. 0.96

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 2.2e-56
       RNA12   1 RkekiedlkewleEnvntFivvkGPrGSGkkeLvldrvlkdrkk.vlvidCdelvkarndaelisaaAsqlGYfPvFswlnsissliDlavqgliGqka 98 
                 R+++ e l+++l++ +nt   v+GP+GSGk+ ++    lk++ + +++id  el ka +d +l+s +A+q+GY+PvFs+lns+++liDla +g+iGqk+
  CDO69022.1  45 RQDAEEALHKYLTDLPNTICFVHGPQGSGKTRML-SSLLKQQGRmAMIIDVGELSKAGSDIALVSGLANQTGYWPVFSFLNSVNNLIDLASVGVIGQKG 142
                 89999***************************99.99999988779***************************************************** PP

       RNA12  99 glsetkea.qlknileiaaaalkdialeerkkedkaa.............................................................. 134
                  +     a  l+++  +  +  +++a++++ ke +a+                                                              
  CDO69022.1 143 KFQIYIHAvGLSRVNATRRSQRQRLAEQSQLKELQAKedqvlrekiergiwhdgridavcgngimselgvgiepfgekdadgplrtavpvqsteeneke 241
                 **98877625777777777777889999996655555667789***********************************************999999997 PP

       RNA12 135 ......tlkeedyleahpeak...........Pvvvidnflaka..ekngvvykklaeWaasLvqsniahVifltedvsaskaLskaLpnqvfktislg 214
                       +++e +  +     +           Pvv+i+nf +k   ++++ + ++l++WaasL + +iahVi+++++    k+L+k+Lp +++++isl+
  CDO69022.1 242 iadeqkQVEEAKQKQ-----QraedlesiesmPVVIIKNFDSKGggARKEELLDVLSQWAASLAEGQIAHVIVVSDNRENIKRLAKSLPSKPLNQISLS 335
                 544444333333333.....256666999999**********97225699************************************************* PP

       RNA12 215 DaseesarkyVlsklkeea 233
                 Da++ sa ++V++kl+++ 
  CDO69022.1 336 DADNASAMSFVKQKLHDSG 354
                 ***************7654 PP

  == domain 2  score: 178.4 bits;  conditional E-value: 1.1e-55
       RNA12 272 lkeldealeklGGRltDLealvrrvksgetpkeAveeiieqsaeeilkmfll.dseeakkakwtkeqaWklikklskkgsieynellleelfkgsaesa 369
                 +++  ++++ lGGR  DLe+l+++v+sg t++eAv++ii + ++e++k+++  d e+ak+ +wt+eqaW l+k+lsk+ +i+y+e+l++  fkg +e+ 
  CDO69022.1 360 TQQELAYIARLGGRASDLESLIHKVRSGMTVQEAVDDIIIRGVSELRKNAFGdDIEDAKSLPWTREQAWILMKQLSKQPEISYHEVLMDFPFKG-DETP 457
                 45556799********************************************9999**************************************.9*** PP

       RNA12 370 lkaLekaelisvstedgrpskikagkPvyraafkrlvsdkvlkavlelevleklikleekkikklEeElrllkk 443
                 l+++e+aelis+ t +grps+ik+gkPvy+++f++lv+d++++a+++++++ek+i+++e++++++E+El +lk+
  CDO69022.1 458 LRNMEHAELISIGTINGRPSTIKPGKPVYKYVFEQLVQDPTFQATQDIAFNEKVIASAEATVRACEDELLTLKD 531
                 **********************************************************************9986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     1e-06    0.0018       4      43 ..      45      84 ..      42      94 .. 0.86
   2 !    7.5   0.1    0.0019       3.5      82     231 ..     218     378 ..     139     380 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
    ATPase_2  4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43
                R+ + + l ++l   pn+i f+ Gp+gsGKt++l  ++++
  CDO69022.1 45 RQDAEEALHKYLTDLPNTICFVHGPQGSGKTRMLSSLLKQ 84
                555667899999**********************988776 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
    ATPase_2  82 l............giavpkaeleeilk..eksklvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsS 166
                                +  + + +ei +  ++ ++++++ ++  e+++     +++ii  +   +  g  ++e+l++ L +   s ++e ++++vi+ s 
  CDO69022.1 218 GekdadgplrtavPVQSTEENEKEIADeqKQVEEAKQK-QQRAEDLESIESMPVVIIKNFDSKG--GGARKEELLDVLSQWAAS-LAEGQIAHVIVVSD 312
                 04444444422222222222222444443333333333.3344566666666*********999..888899***999998877.89999********* PP

    ATPase_2 167 eglfiervyneselegrhkyilvddldketalnflkegfkel...eelskedfeeiyryvGGkPkalv 231
                 +   i+r+ ++ +  +  + i++ d d  +a+ f+k+  ++     +++++++ +i r +GG   +l+
  CDO69022.1 313 NRENIKRLAKSLP-SKPLNQISLSDADNASAMSFVKQKLHDSgmdVNFTQQELAYIAR-LGGRASDLE 378
                 9999996665544.44556688888889999999998777776333336666666655.567777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   1.3   3.1e-07   0.00056      10      52 ..      46      89 ..      42     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.1e-07
      AAA_16 10 eqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdg 52
                +  ++al++  ++ p  +++++G++G+GK++++ +ll++  +  
  CDO69022.1 46 QDAEEALHKYLTDLPnTICFVHGPQGSGKTRMLSSLLKQQGRMA 89
                44456666666666779********************8766653 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.5e-06    0.0062       3      47 ..      64     108 ..      62     126 .. 0.87
   2 ?   -2.4   0.0       1.7     3e+03      53      79 ..     296     323 ..     278     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.5e-06
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCH CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellr 47 
                   + G+ GsGKT +l++ll+++  + + + v+e+++ + D +l++
  CDO69022.1  64 CFVHGPQGSGKTRMLSSLLKQQGRMAMIIDVGELSKAGSDIALVS 108
                 5689***************9988888888899***9999999886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                 EEEETTTTECCH.CTT-HHHHHHHHHHH CS
        cobW  53 ivelenGciCct.lredllkelealeer 79 
                 + +l++G i +  + +d  +++++l++ 
  CDO69022.1 296 AASLAEGQIAHViVVSDNRENIKRLAKS 323
                 6788999999987788888888888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     1e-05     0.018       2      35 ..      64      99 ..      63     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklg..avllssdtlrr 35
                 +++G++GsGK+  + +llk++g  a +++  +l++
  CDO69022.1 64 CFVHGPQGSGKTRMLSSLLKQQGrmAMIIDVGELSK 99
                589*******************99877777666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.6e-05     0.047       6      30 ..      62      86 ..      60     192 .. 0.86
   2 ?   -0.4   0.1      0.73   1.3e+03      60     104 ..     272     318 ..     234     346 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleqld 30
                +i++v+G+ G+GKT+ l  ll+q  
  CDO69022.1 62 TICFVHGPQGSGKTRMLSSLLKQQG 86
                6899*****************9974 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.73
      AAA_22  60 llralglelkaerlsseellealeqalrarav....ielliiDEaqhlr 104
                 + +++++++ +  +++eell+ l q + + a     +++++ D+ +++ 
  CDO69022.1 272 IIKNFDSKGGG--ARKEELLDVLSQWAASLAEgqiaHVIVVSDNRENIK 318
                 55566655555..666666666666666666666656666667766664 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.029      35      97 ..      64     127 ..      59     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
       AAA_6  35 gapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGla.qsGaWgCfdeFnrie 97 
                 + ++Gp g GKt    +L k+ +++ +++++ +  ++ s   + +Gla q+G W  f  +n ++
  CDO69022.1  64 CFVHGPQGSGKTRMLSSLLKQQGRMAMIIDVGELSKAGSDIALVSGLAnQTGYWPVFSFLNSVN 127
                 5689*******************************************8679*****99888776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.23       2      35 ..      65      98 ..      64     134 .. 0.86
   2 ?    0.2   0.2      0.51   9.1e+02      44      98 ..     247     304 ..     227     325 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA  2 llyGppGtGKTllakavakelgvefleisgsell 35
                 ++Gp G GKT + +++ k+ g+  + i++ el 
  CDO69022.1 65 FVHGPQGSGKTRMLSSLLKQQGRMAMIIDVGELS 98
                589*******************999999999987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  44 kkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 k+++e  ++ ++ a       +  +++i ++d+ ++      +ee  +v++q  + l + + 
  CDO69022.1 247 KQVEEAKQKQQR-AedlesieSMPVVIIKNFDSKGGGA---RKEELLDVLSQWAASLAEGQI 304
                 333333333222.1244455355999999999987776...344444444444444444444 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.2     4e+03      16      30 ..      40      57 ..      31      60 .. 0.54
   2 ?   -2.3   0.0       2.7   4.9e+03      17      33 ..     430     447 ..     423     448 .. 0.62
   3 ?    9.8   0.1   0.00045      0.81      29      57 ..     551     579 ..     539     581 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.2
  NYD-SP28_assoc 16 klWda...lekaLekYhe 30
                     +W+    +e+aL kY++
      CDO69022.1 40 GVWKErqdAEEALHKYLT 57
                    566651114556666654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
  NYD-SP28_assoc  17 lWdalekaLe.kYhevLt 33 
                     l+++l k+ e  YhevL+
      CDO69022.1 430 LMKQLSKQPEiSYHEVLM 447
                     555555555436999997 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00045
  NYD-SP28_assoc  29 hevLteRaklieetesLekqNeeLrnlLk 57 
                     +++L++  +  +++e+Le+qN +L+++L 
      CDO69022.1 551 NHLLRKMRAAQDKVEALERQNGQLKKVLA 579
                     6788888899999*************996 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.9   0.00016      0.29       9     176 ..      51     257 ..      44     272 .. 0.58
   2 ?   -3.4   0.1       3.6   6.5e+03     150     172 ..     544     566 ..     488     580 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
      AAA_11   9 aiksalsese..itliqGPPGtgKTktivellsqllsrrk....seeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeris 101
                 a+++ l+     i+ ++GP G+gKT+++ +ll+q   ++      e +k+++   Lv++  N      +      +l+s  + +++  v v  ++ +++
  CDO69022.1  51 ALHKYLTDLPntICFVHGPQGSGKTRMLSSLLKQQGRMAMiidvGELSKAGSDIALVSGLANQTGYWPVFS----FLNSVNNLIDLASVGVIGQKGKFQ 145
                 555555443345899*******************9544223333455566666666666666544333333....555778888888887777776777 PP

      AAA_11 102 eavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek...........................................eklkkske 157
                   +++v l++    r++++++ + ++++++ ++k+++ lr++ e                                               +    +++
  CDO69022.1 146 IYIHAVGLSRVNATRRSQRQRLAEQSQLKELQAKEDQVLREKIER--GiwhdgridavcgngimselgvgiepfgekdadgplrtavpvqsT----EEN 238
                 777777777777777766654444444444444444444333333..133566688888888888888888888888777777765533220....222 PP

      AAA_11 158 kskskleqerrklkkerke 176
                 +++   eq++ +  k++++
  CDO69022.1 239 EKEIADEQKQVEEAKQKQQ 257
                 2222222222222222222 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
      AAA_11 150 eklkkskekskskleqerrklkk 172
                 +++++ +++  +k+++ ++k+++
  CDO69022.1 544 RAVEMRANHLLRKMRAAQDKVEA 566
                 33333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1493  (0.0832729); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 4212.22
//
Query:       CDO69023.1  [L=696]
Description: hypothetical protein BN946_scf184834.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-79  265.7   0.0    6.2e-79  265.3   0.0    1.2  1  DUF974    Protein of unknown function (DUF974)


Domain annotation for each model (and alignments):
>> DUF974  Protein of unknown function (DUF974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.3   0.0   3.5e-83   6.2e-79       1     246 []      45     300 ..      45     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 265.3 bits;  conditional E-value: 3.5e-83
      DUF974   1 LtLPqsFGsiylGetFscylcvnnesaekevrdvrikaelqtpsqrleLeeseeeekekelepgeslqkvvshelkelGnhvLavtVsYte........ 91 
                 LtLP++FG+i+lGetFs++l+vnn+++  ev++v++++e+qt+s+++ L  +e + +e++l+ g+sl+++vshe+kelG+hvL +tVsY+         
  CDO69023.1  45 LTLPAAFGTIQLGETFSSCLSVNNDAN-VEVEGVTMRVEMQTASSKTLL--AEFGGPEQRLSVGQSLERIVSHEIKELGQHVLGCTVSYRVppgvrhlp 140
                 89*************************.*********************..679***********************************99*******9 PP

      DUF974  92 ..atkeasgrtrtfrKlYkFqvkkpLsVrtkvteleskeaal....reevvLeaqleNvtedaivlekvklepeeglkaeslneeekeeeeeeee.kee 183
                   + ++++ +++tfrK+YkF+v++pLsV+tkv+ ++s++a l    re+v+Le++++N+t+d ++le++++e+ +g+++++ n  ++ ++ ++e   + 
  CDO69023.1 141 qqSVESQEPNVQTFRKFYKFAVTNPLSVKTKVHLPRSPTALLsrkeREKVFLEVHIQNLTQDVMWLERMQFECVDGWEVQDANILDNPATGSKEYlFSG 239
                 8766677778**************************9998889999*************************************9888887777774445 PP

      DUF974 184 ekpvlqpgdvrqvlFlleeepkeeeaekeeeeakgrlilGkLdisWrsamGerGrLqTsqLsr 246
                 +++++qp+d rq++++l  +pk   +   ++   ++l+lG+LdisWrs++Ge+GrL Ts+Lsr
  CDO69023.1 240 STALMQPQDLRQYIYIL--SPKVLPSFPVTHVPGSILPLGRLDISWRSSYGEPGRLLTSTLSR 300
                 9****************..777778999999999**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4914.99
//
Query:       CDO69024.1  [L=433]
Description: hypothetical protein BN946_scf184834.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-56  192.5   0.0    1.8e-56  191.8   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.0     1e-60   1.8e-56      84     459 ..      11     410 ..       5     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 1e-60
                 TSSSTTCGH.HHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHH CS
        p450  84 gkgvlfang.ekwkklRrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveels 181
                 g+g++f  + + wk  R++  ++++ +  ++++++  +++ +++ +l+++ ++       + l + a  +i+si + ++++  +d+  +++++av+ + 
  CDO69024.1  11 GNGLAFVPYnNFWKDCRKLARQEFHANPVKRYRSTEVKSTYRFLLELQRRPDSL-----MDNLRHLAGATIMSIGYDIEVQPEDDPFVQTAEEAVASIA 104
                 78889999989****************333466666666666666666666655.....8888888899999999999999999**9***********9 PP

                 HHHHCHHHHCCCCCHHHTCCSCHH.HHHHHHHHHHHHHHHHHHHHHHHHCHCHC.....................SCSSCSHHHHHHHHC..TTCTCTS CS
        p450 182 sllskssvqllllfpllkylptkl.lrklkeavkklkdlldklieerretldsa.....................kksrrdfldalllak..kekkges 256
                 + +++ s  l++++p+lky+p+++ +  +k+  k+    +dkl+ + +   +++                       +  d ++  ++++  k+ ++  
  CDO69024.1 105 ETTNAGS-YLVDVIPILKYIPEWFpGAGFKKQAKIWRRAIDKLFDDPYNVCQERlvclgttwlndapgvdfapkaVGQLGDCAAKGMIETfgKHPDDI- 201
                 9997766.8999*********9984455666778888888888888888888888888999***9999999865533455555555555565555555. PP

                 SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTE CS
        p450 257 klsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgy 355
                 ++ ++ ++ t++ l+++G dTt s+l  +++ +  nP++ ek +  +d+v+g +r pt++d ++lpy  a+++E LR +pvvpl +p+++t+d   +gy
  CDO69024.1 202 NYANTVIKSTLGSLYVGGADTTVSALGTFFLAMTLNPDILEKAHRQLDQVVGTHRLPTFQDQASLPYIGAIVRENLRWRPVVPLDVPHRLTEDDIYNGY 300
                 9************************************************************************************************** PP

                 EE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.. CS
        p450 356 lipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks.. 450
                  +pkG+ ++ n++a+++d++++p+P+++ p+R+l  +g  n  + + ++++FG+G+R+C+G+ +A   + + +a++L+ F+++   ++d + i +    
  CDO69024.1 301 YLPKGSLIVANTWAILHDEKMYPDPDRYSPDRYLLPDGtlNPAVRDPSSVAFGFGRRICPGRYMALDSMWITIACVLSLFDIKKAVDKDGNEITPDGey 399
                 **************************************996669**************************************96555554444444457 PP

                 ..SSEEESSSS CS
        p450 451 ..glllppkpi 459
                   g+l++pkp+
  CDO69024.1 400 irGFLCHPKPF 410
                 99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3155.11
//
Query:       CDO69025.1  [L=295]
Description: hypothetical protein BN946_scf184834.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-61  206.6   0.0    5.2e-61  206.3   0.0    1.1  1  Bmt2             25S rRNA (adenine(2142)-N(1))-methyltransfer
     0.0087   15.9   0.0      0.032   14.1   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   15.7   0.0      0.036   14.7   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
       0.02   15.6   0.0      0.044   14.5   0.0    1.6  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Bmt2  25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0   1.2e-64   5.2e-61       2     220 .]      73     293 ..      72     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 1.2e-64
        Bmt2   2 eieaeiealGGleaYQlaSklgqskerggdsskvlvewlkekleelkleekk..lrlLevGalstknaiskvklldvtrIDLnsqekgilkqdFlerpl 98 
                 +ie+ei alGGle+YQ+ S+ gq+++rgg s k+ ++wl++ +  ++ +ek+  lrlLevGal+++n++s +++++v+ IDL+s+++ il+qdFl +  
  CDO69025.1  73 AIEREIGALGGLETYQRMSAIGQDNDRGGGSEKIFINWLRDLKIPKAMKEKAikLRLLEVGALKPDNYASCSSWIEVMPIDLHSRHPAILEQDFLLM-D 170
                 699*************************************999887776654449***************************************997.4 PP

        Bmt2  99 pkkeeekFdiislSLVlNfvpdaakRGemlkrvtkfLkpkkkaslsslflvLPlpCvtnSrylteerlrailsslGfelvke..ketkklvyyllel.. 193
                 p ++ +++d+islSLVlNfvp+a++RG ml+  ++ L+p++      lf+ LPlpC+ nSrylt e+++ +++++Gfe+v +  + + k++y+l+++  
  CDO69025.1 171 PVEHGQSWDLISLSLVLNFVPEAKDRGRMLRLAHAMLRPEGL-----LFVALPLPCIMNSRYLTPEHFQGLMAAVGFEQVYSrwRAGGKMAYWLFRKal 264
                 67899***********************************99.....********************************988556899********966 PP

        Bmt2 194 ..kekeeakekvfkkeelndgkkrnnFai 220
                    +++++++    k+++   ++rnnF +
  CDO69025.1 265 prASSTHEDSLPYVKKIVFRQGNRNNFVV 293
                 6534467788889999999999*****86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.2e-06     0.032      47     121 ..     149     219 ..     113     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.2e-06
  Methyltransf_23  47 vtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp...dppellrqiatllkpgGylllsepl 121
                      v  +Dl ++  +i+        + f  ++  e  +++dlI+l+ vl+ vp   d  + lr ++++l+p+G+l++  pl
       CDO69025.1 149 VMPIDLHSRHPAIL-------EQDFLLMDPVEHGQSWDLISLSLVLNFVPeakDRGRMLRLAHAMLRPEGLLFVALPL 219
                      44555544444443.......444555566677889**************777777*****************98875 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.1e-06     0.036      55      96 .]     169     215 ..     146     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.1e-06
                      T.SS-T.T-EEEEEEES-CCC-...CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  55 l.pfed.nsfDlvvssevlhhv...edpekalkeiaRvLkpgGllvi 96 
                      + p+e  +s Dl+ +s vl++v   +d+ + l+ ++ +L+p+Gll++
       CDO69025.1 169 MdPVEHgQSWDLISLSLVLNFVpeaKDRGRMLRLAHAMLRPEGLLFV 215
                      4466664699************9999******************986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.9e-06     0.044      64      99 .]     165     213 ..     134     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.9e-06
  Methyltransf_12  64 g..........ssfDlvvasnvlhhl...kdirevldnirklLkpgGrl 99 
                                 +s+Dl+ +s vl+ +   kd+ ++l+ ++++L+p+G l
       CDO69025.1 165 DfllmdpvehgQSWDLISLSLVLNFVpeaKDRGRMLRLAHAMLRPEGLL 213
                      044555556678****************99999**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1997.45
//
Query:       CDO69026.1  [L=584]
Description: hypothetical protein BN946_scf184834.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-55  186.1   0.1    1.2e-54  185.6   0.1    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.8e-21   75.7   0.6    8.8e-20   70.9   0.6    2.4  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.013   15.2   0.1       0.57    9.9   0.0    2.5  2  Vta1_C         Vta1 C-terminal domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.1   2.1e-58   1.2e-54       5     250 .]     332     571 ..     331     571 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 2.1e-58
                    EEEEEEEESSHHHHHHHHHHHHHH..T---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE... CS
  FAD-oxidase_C   5 ravalvafpsfeaavkavreiaqa..giipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvlv 98 
                    ++va++ fp++e av+av+ei     g ++  +el+d+++++++++   +  +   +   +l+++++gd  +++ + ++ +v+ i+  +   ++ +
     CDO69026.1 332 TKVAMAQFPDVETAVSAVQEILNTpaGPHIQCVELLDDHMMKAIADAGLV--SQTYPIHDTLFFKIQGDP-AAIISTAK-TVQGIVARHRSMNFKF 423
                    579*******************9877889999****************99..88899999**********.66666666.79999999999999** PP

                    .......ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHHHH CS
  FAD-oxidase_C  99 aqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklvde 194
                    a++e+eae+lw+ Rk+al   + + +++g  ++++D++vPvs+l++lv+++k+ l++++l+ +++gH+gdgn+h  ilf+   ++e +++ ++v++
     CDO69026.1 424 AETEDEAEELWESRKYALM--STIESEEGARCWTTDVCVPVSKLPELVSETKKDLQRSKLRSTIVGHVGDGNFHAFILFKS--DNELRAVSDAVHR 515
                    *****************99..99********************************************************66..599999******* PP

                    HHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 195 vvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +v++a++l+G+++gEHGvG+ k++yl++e g ++++lm+ iK+a+DP +i+NPgk+
     CDO69026.1 516 LVHRAIALDGTCTGEHGVGVGKREYLTEELGRDTVELMWTIKRAIDPLDIMNPGKL 571
                    ******************************************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.6   1.5e-23   8.8e-20       2     138 ..     150     274 ..     148     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.5e-23
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHT..TECSSGGGTT CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakg..lllglepgsg 95 
                    ++vv p+s+eev++++++a+++++p+++++g +sl g+     g      + n+     e +  ++ +aG++++d++ al++kg  l+++l+pg g
     CDO69026.1 150 SVVVHPTSTEEVVEIVNVARKYRVPIVPYSGATSLEGHFS---G------AHND----TEGDSDLVCQAGARWEDINSALKEKGipLFFPLDPGPG 232
                    58**********************************9984...2......3444....2335689***************9998334555555554 PP

                    CGSBHHHTTTTT-EETTEEGG--HH.GTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlir.dnvlglevvladGevvrl 138
                      +t+GG+i t+ +G+++ +yG+ r ++ l++++vl++G+v+++
     CDO69026.1 233 --ATIGGMIGTGCSGTNAVRYGTARgEWFLNVTAVLPNGKVIKT 274
                    ..69*********************9***************997 PP

>> Vta1_C  Vta1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.6e-05      0.57      21      34 ..     107     120 ..     107     121 .. 0.95
   2 ?    2.3   0.0     0.022   1.3e+02      19      31 ..     338     350 ..     337     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.6e-05
      Vta1_C  21 eDvetAiknLqeAL 34 
                 eDve+Ai++L++A+
  CDO69026.1 107 EDVENAIEELRKAI 120
                 8***********96 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.022
      Vta1_C  19 qYeDvetAiknLq 31 
                 q+ DvetA++  q
  CDO69026.1 338 QFPDVETAVSAVQ 350
                 899*****98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4041.32
//
Query:       CDO69027.1  [L=318]
Description: hypothetical protein BN946_scf184834.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-35  123.1   0.1    1.6e-35  122.6   0.1    1.2  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   8.7e-40   1.6e-35       2     126 ..     113     239 ..     112     241 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 8.7e-40
                     GGGTSSTTTTTTTTT-S--.......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS.....SEEE CS
  Ribosomal_L27A   2 GktgGrGhkGqkkrsgvkk.kpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikk.kdgvKv 94 
                     Gkt+GrGhkGqk+r g  k k+gfeGGq+p+++ +pkrGf n +++k y++vnl++++++id++rl+   ++++i+++el  +g+i++ +dg+K+
      CDO69027.1 113 GKTSGRGHKGQKARAGNGKpKAGFEGGQTPIVKLFPKRGFVN-PERKVYAPVNLDRIQHWIDQGRLSCS-PDKPITARELLLSGCIHQvHDGIKL 205
                     9***************7776999*****************98.569********************864.89****************9****** PP

                     E--S..---.--EEEESEE-HHHHHHHHHTT-EE CS
  Ribosomal_L27A  95 lgkg..eltkklkvkaskfSkkAkekIeaaGGkv 126
                     l++g  +l+++++++a ++S++A+ ++e++GG+v
      CDO69027.1 206 LASGaeHLKTAIHITAARASQSAIRAVEKMGGTV 239
                     ***99899999*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2195.63
//
Query:       CDO69028.1  [L=737]
Description: hypothetical protein BN946_scf184834.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-19   69.9   0.0    1.9e-15   57.4   0.0    2.5  2  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    8.3e-09   36.2   0.4    1.2e-08   35.7   0.4    1.3  1  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   2.1e-19   1.9e-15      29     123 ..     356     451 ..     322     464 .. 0.87
   2 !    9.9   0.0   8.9e-05       0.8     136     154 ..     523     541 ..     494     545 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2.1e-19
                    HHHTGSTT--EEEEEGGG----B..TTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHHHHH.HTTTTTS--TT-EEEESEEEEE-TTS-TT--EEE CS
  5_nucleotid_C  29 dalraaagadialangggiradl..paGditvkdlltvlpfgntlvvveltGaqlkeaLenesvsaskaasgrflqvsGlrytydlskpagervts 122
                     ++++  g d +++ +g++r+d    +G it +d+l++lpf++ +vv el G+++++aLe +s ++ +a+ grf+ +sG+r+ +d ++p+g+rv  
     CDO69028.1 356 RVQETGGGSDGVFICAGTLRGDSvyGPGVITLGDILEILPFEDPIVVQELDGETIWAALE-ASLETWPAQEGRFPVISGFRVSWDSRRPPGQRVLG 450
                    5566777778889999999995546889********************************.5999*****************************88 PP

                    E CS
  5_nucleotid_C 123 l 123
                    +
     CDO69028.1 451 V 451
                    7 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8.9e-05
                    SEEEEEEEHHHHTTGGG-H CS
  5_nucleotid_C 136 ktYkvatnsylasggdgfs 154
                    ++Y ++t +y+a+g+dgf 
     CDO69028.1 523 RMYSIVTRQYMAEGHDGFL 541
                    69***************94 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.4   1.4e-12   1.2e-08       4     204 .]       8     242 ..       5     242 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.4e-12
                  EEEESBTB..........TTCCTHHHHHHHHHHHHHHH......TTE.SEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHHHHHH CS
  Metallophos   4 lvigDlHl..........algggqlddllkllddllre......ekp.dlvllaGDlvdrgdlekellel.laalvkypipvylllGNHegfeeelln 83 
                  l+++D+ +          + +  +  + +++ldd++++       k+  lvl+ GD++  ++ ++ +    + ++ +   p + l GNH+ f+ ++++
   CDO69028.1   8 LHFNDV-YrvqpfkinpkSPETIDVTQWAAMLDDIRDQwlerpdGKRdGLVLFSGDVFSPSVESSVTRGShMVPVMNAIGPDVSLTGNHD-FDFGYPH 103
                  566666.33666666666555555566677888884444434344551556677*******777744444333333322244********.9999999 PP

                  HHHHHHHHHHHHEHHHCEEETSEEEE.EETTE....EEEEEEESECEEE........THHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEE CS
  Metallophos  84 kygylgifsepwrsdaevfnnlplas.lgsgs....lkvlllhGgspel........lvsldklgslnleleapepg...dewlkdlekrekadwviv 165
                  + + +  ++ pw       n++              ++v+   G  ++         + +++ + +  ++++ +e      e l+d e + k d++i+
   CDO69028.1 104 LSKLIQDTNFPWILS----NIIDTETsR-IPEhlheFYVFERSGVRIGViglvekewIATVSTWPTSFKYKDMAEVAldlSERLRDPEGEHKCDIIIA 196
                  988888777777766....444444421.122455555666666533335556666688888888888888888888888999999************ PP

                  EESSESS.......CSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 166 lgHsply.......rgsgylfgdealedllkkygvdlvisGHtHvy 204
                  l+H  ++         +  + + ++ +++   +gvd++++GH+H y
   CDO69028.1 197 LTHARVPndialakKVNALSPSAQQSKPIDTLHGVDIIFGGHDHLY 242
                  *******888887777777777777779999*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5314.82
//
Query:       CDO69029.1  [L=174]
Description: hypothetical protein BN946_scf184834.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1302.59
//
Query:       CDO69030.1  [L=939]
Description: hypothetical protein BN946_scf184834.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-29  101.5   0.0    1.1e-28   99.8   0.0    2.0  1  Telomere_reg-2  Telomere length regulation protein


Domain annotation for each model (and alignments):
>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   6.3e-33   1.1e-28       1     109 []     487     605 ..     487     605 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 6.3e-33
  Telomere_reg-2   1 pvYlkdllelLr.........dkddyekieaaLksaeeLir.rkadeveenaveLataLltledkfdienfeelrlnalvallvatpekvaeylt 85 
                     pvYl +l el+r         ++ ++ kie+aL++aeeLir ++ ++ eenav+L++ L++l++++d+e f+++r++al al++++p+k+a+ ++
      CDO69030.1 487 PVYLAQLGELIRptsglqggdEQLTATKIEVALEVAEELIRpSNGSKSEENAVNLVHGLVGLQNNYDLEGFDQQRQAALNALVACCPRKAAPSII 581
                     8******************9666889***************555559999********************************************* PP

  Telomere_reg-2  86 eeffsnqyslqqRidiLsvlalaA 109
                     eeff nqys  qR+++L++lal+A
      CDO69030.1 582 EEFFRNQYSTDQRFVMLNALALGA 605
                     *********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 6288.75
//
Query:       CDO69031.1  [L=471]
Description: hypothetical protein BN946_scf184834.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-21   76.7  32.8    3.4e-21   75.6  23.7    2.6  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.34   11.0   0.8       0.96    9.5   0.8    1.7  1  DUF5392   Family of unknown function (DUF5392)
        1.7    8.7   4.6         23    5.0   1.4    2.7  2  Vma12     Endoplasmic reticulum-based factor for assembly of 


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6  23.7   5.7e-25   3.4e-21     118     352 ..     146     397 ..     129     398 .. 0.85
   2 !   14.6   1.6   1.9e-06     0.011     103     180 ..     362     443 ..     360     461 .. 0.61

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 5.7e-25
       MFS_1 118 ergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee...............kgtgpap 195
                 e + ++++l +++sl++++  ll+++++   g      W ++f++ + +++l++ ++++llp  p++ + ++++e+                ++++   
  CDO69031.1 146 ELTGGLSVLFSAVSLASAFSGLLAAAIVKMDGtggkpgWAWLFILEGTFTVLFGFVAFFLLPNAPTSVPFFTEAEKDlikralhedgiilvgEQDKDYT 244
                 678899**********************877789*******************999999999999999999999999********************** PP

       MFS_1 196 lvpawkallkdpvlwillialllf..ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                 +++ +++ +++p++  +lial++f  ++ +sgl ++lp++ +  lg+sg  +a l++  +++v+ai+++ +++l+dr+ r  r l +++++++aa+gla
  CDO69031.1 245 WTE-FGKAFTQPHV--ILIALCGFfnGATVSGLAYFLPSI-VAGLGYSG-AEAQLMSVPPFAVTAIFSIASSYLADRYAR--RGLTIVIFATVAAIGLA 336
                 ***.********99..6666666622455566*******7.*******6.77777799999999999**********999..55555566666666666 PP

       MFS_1 293 llavtssavllllvlvliGf.glgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                 ++ ++    l+ +v++++ + g++++ p+l a++s+++ p+ +++ta++l +t++++g++++
  CDO69031.1 337 VFLAS-YVDLVRYVSLFLLVpGSFCIAPPLGAWMSNNTaPTIRRATALALLSTTSNVGSIVS 397
                 65555.33555556666666699999999999999998799******************987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.9e-06
       MFS_1 103 fpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafv....lfllllpeepperk 180
                 +p  +a+++  +++  +r+ a++lls+++++G+i+ + + g+l++   ++++  +l ++ +  +v     + l+l  e+++r+
  CDO69031.1 362 APPLGAWMSNNTAPtIRRATALALLSTTSNVGSIVSAWVLGALSAPPRYTVATSVLLAFQFGILVcaagNM-LWLASENSKRE 443
                 4555666666666637***************************9776655553333333333333211211.33333333333 PP

>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.8   0.00016      0.96      33      77 ..     295     339 ..     290     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
     DUF5392  33 islPLllvslinlillllkaeleedsliaiilyallgAlGlAlfk 77 
                 +s+P  +v++i  i+    a++ ++  ++i+++a ++A+GlA+f 
  CDO69031.1 295 MSVPPFAVTAIFSIASSYLADRYARRGLTIVIFATVAAIGLAVFL 339
                 56655444444444444555666778899*************996 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.4    0.0039        23      73     131 ..     290     348 ..     278     351 .. 0.74
   2 ?    3.8   0.1    0.0095        57      86     127 ..     390     433 ..     371     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0039
       Vma12  73 vnrqlilvlNiliSvvavffavwialrsartpslpvrvllslvvallVgvAEvvvyaky 131
                 ++ ql++v  + ++ ++++++ + a r+ar+  + v +     ++l V++A  v +++y
  CDO69031.1 290 AEAQLMSVPPFAVTAIFSIASSYLADRYARRGLTIVIFATVAAIGLAVFLASYVDLVRY 348
                 6789*************************764444434444445677777777666666 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0095
       Vma12  86 Svvavffavwialrsartp..slpvrvllslvvallVgvAEvvv 127
                 S v+++++ w++   + +p  ++++ vll++ +++lV  A  ++
  CDO69031.1 390 SNVGSIVSAWVLGALSAPPryTVATSVLLAFQFGILVCAAGNML 433
                 66889999999999988888999999999999999998886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3190.48
//
Query:       CDO69032.1  [L=461]
Description: hypothetical protein BN946_scf184834.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-78  264.5   6.8    2.3e-78  264.1   6.8    1.1  1  Sugar_tr  Sugar (and other) transporter
    2.7e-22   79.2  20.9    2.7e-22   79.2  20.9    1.7  2  MFS_1     Major Facilitator Superfamily
    0.00037   19.1  10.7    0.00054   18.5   4.7    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   6.8   3.8e-82   2.3e-78      45     434 ..      47     456 ..      13     459 .. 0.89

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 3.8e-82
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                 + + +l++si+ vG+++Gs+ a +++dr+GRk + l++a+++ iga  +a++    s+  l+vgR+l+G+++Gl  ++ P+yisEiAp k+ ga+++l+
  CDO69032.1  47 NATFSLLTSIYTVGGLLGSVGANIVMDRWGRKGACLASAFVMAIGAGFMAVSA---SLSPLLVGRLLTGVAAGLGLCVGPIYISEIAPVKIKGAVGVLT 142
                 567899***********************************************...9****************************************** PP

                 HHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHC.......HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 144 qlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrge.......edadrelaeekdsleaeq 235
                 q+ai++Gi++++ +gl l++ +    wr+ l ++++++l++l+++  + ESP +l  +g   + +++ ++l +        +da++++++    l a+ 
  CDO69032.1 143 QFAIVIGIMITQAMGLHLATPRT---WRLVLLFSSALSLAQLLVGPIIVESPVWLNRHGFLRDKDASARRLWKGghalhspDDANEDAEDPL--LGANT 236
                 *********************99...*****************************9999999888888887666677875433333333333..33332 PP

                 H...................HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHH CS
    Sugar_tr 236 eee..............kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtll 320
                 +e+               a++ ++l +++ r++l i++  +++qql+G+na++yys ti+ ++  +   +v++++ vvnf++t + ifl+dr+GR++ll
  CDO69032.1 237 DENqslnpdrrldehatAATVPQVLLRREFRKPLAIVCFSMLCQQLSGVNAVLYYSNTILAKALPDLGPYVSLGITVVNFFMTAAPIFLIDRLGRKKLL 335
                 22244778889999999999*******9**************************************99******************************* PP

                 HHHHHHHHHHHHHHH..HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH. CS
    Sugar_tr 321 llGaagmaicfvilgivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig. 414
                  l+a+g++i ++ +g   + l ++     ++a i ++++++++   fa+g+gpvp+v+++E++p++  s+ +++a  +nw+anfl++l+f  + + ++ 
  CDO69032.1 336 SLSATGAIISLLGVG---FGLDSGAvalaSVAIITFVACVLIVSRSFAFGIGPVPFVMIPEVSPPQAVSALSSVALSLNWVANFLVGLVFLPLRDFLSh 431
                 **************9...3333333423344555555556666668***************************************************** PP

                 .....T-HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 415 .....ggyvflvfaglavlfiifvf 434
                      +g vf+vfa+l+++f+++ f
  CDO69032.1 432 gdplkEGRVFFVFAALLAFFTLMLF 456
                 *****9***************9877 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2  20.9   4.5e-26   2.7e-22      26     351 ..      36     417 ..      14     422 .. 0.73
   2 !    6.5  14.4   0.00058       3.4      54     171 ..     324     459 ..     324     460 .. 0.70

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 4.5e-26
       MFS_1  26 dlg......ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkee 118
                 ++g      ++ ++++ll+++y++g +++s+ +  ++dr+Gr+   l++++++a+g+ ++++++sl +llv+r+l+G++ag+++ +g ++i++++p + 
  CDO69032.1  36 HYGlptcipMDNATFSLLTSIYTVGGLLGSVGANIVMDRWGRKGACLASAFVMAIGAGFMAVSASLSPLLVGRLLTGVAAGLGLCVGPIYISEIAPVKI 134
                 55566666678899******************************************44444346666******************************99 PP

       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............................. 188
                 +g +  l + ++ +G++++ + g  la+   Wr+v ++  ++sl  ++ ++  ++e+p+   r    +++                             
  CDO69032.1 135 KGAVGVLTQFAIVIGIMITQAMGLHLATPRTWRLVLLFSSALSLAQLL-VGPIIVESPVWLNRHGFLRDKdasarrlwkgghalhspddanedaedpll 232
                 99999999*******************999***************977.45555455555555555555566666777777888888888888889999 PP

       MFS_1 189 ................kgtgpaplvp....awkallkdpvlwillialllf....ffgfsglltllplylqevlgls...glllaglllallalvgail 260
                                   ++ a+  +    +++  +++p    l i+++++      g++++l+++ ++      l+    ++++g        v+ ++
  CDO69032.1 233 gantdenqslnpdrrlDEHATAA--TvpqvLLRREFRKP----LAIVCFSMlcqqLSGVNAVLYYSNTI--LAKALPdlgPYVSLG------ITVVNFF 317
                 99777787777777443333333..33466555555555....55555555122244455577777774..444444223444444......4444444 PP

       MFS_1 261 allagrls.drlgrrrrlllallllllaalglallavt....ssavllll......vlvl...iGfglgfvfpsllalasdlappeeagtasglfntag 345
                 +  a  ++ drlgr++ l l+  ++++++lg+ +   +         + +      ++vl    +f++g+  p  ++++ ++ pp++  ++s+++ +++
  CDO69032.1 318 MTAAPIFLiDRLGRKKLLSLSATGAIISLLGVGFGLDSgavaL----ASVaiitfvACVLivsRSFAFGI-GPVPFVMIPEVSPPQAVSALSSVALSLN 411
                 444444444*************************999944431....33333344433334344444443.8999999999999999999999988888 PP

       MFS_1 346 slggal 351
                  ++ +l
  CDO69032.1 412 WVANFL 417
                 777665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00058
       MFS_1  54 rlsdrfGrrrvlllglllfalglllll.f.....a...ss...lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgp 138
                 +l+dr+Gr+++l l++++ +++ ll++ f     a   +s   ++ + +vl v  +++  ++ p+  ++i +++p++  +   +++ + + ++  ++g 
  CDO69032.1 324 FLIDRLGRKKLLSLSATGAIIS-LLGVgFgldsgAvalASvaiITfVACVLIVSRSFA-FGIGPVPFVMIPEVSPPQAVSALSSVALSLNWVANfLVGL 420
                 599*******************.55555855544134533444332344444444444.5788*************99999999999888888845555 PP

       MFS_1 139 llggllasslg.......Wravfyilaivsllafvlflll 171
                 ++ +l  + l+        r+ f+++a+++++ ++lf l+
  CDO69032.1 421 VFLPL-RDFLShgdplkeGRVFFVFAALLAFFTLMLFSLY 459
                 55553.2333344799999999999999999998887665 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   4.7     9e-08   0.00054      81     227 ..      51     198 ..      43     215 .. 0.82
   2 !    4.0   0.3    0.0022        13      15     125 ..     243     352 ..     235     382 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9e-08
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpa.gasplfvgelmsnktk.flgllivsipvvv 177
                 sl+++++t+g  +  +    + dr+gr+   +++  +  +ga   + ++ +  ll    l gvaag      p+++ e+   k k  +g+l+  + v+ 
  CDO69032.1  51 SLLTSIYTVGGLLGSVGANIVMDRWGRKGACLASAFVMAIGAGFMAVSASLSPLLVGRLLTGVAAGLGlCVGPIYISEIAPVKIKgAVGVLTQFAIVIG 149
                 788899999999999999999**********************99999******************752679***********9945899998888888 PP

       TRI12 178 tsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhg 227
                 +  ++  +g  la   +wr ++     +s   +l+  +    p + + hg
  CDO69032.1 150 IM-ITQAMGLHLATPRTWRLVLLFSSALSLAQLLVGPIIVESPVWLNRHG 198
                 87.999*************9987666655544444445555666666665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0022
       TRI12  15 qpddrlrakalatsa.delpegyyrsprvvasfaafslnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvi 112
                 +pd rl  +a a++  + l    +r p  +  f+ +  ++     vl  s + l + l d+g     ++    + +  a  i+    l dr+gr+ ++ 
  CDO69032.1 243 NPDRRLDEHATAATVpQVLLRREFRKPLAIVCFSMLCQQLSGVNAVLYYSNTILAKALPDLGPYVSLGITVVNFFMTAA-PIF----LIDRLGRKKLLS 336
                 69999999998766516688999***************************************99888887777777655.454....457778887665 PP

       TRI12 113 lt...hilglvgaivg 125
                 l+    i+ l+g   g
  CDO69032.1 337 LSatgAIISLLGVGFG 352
                 4311256666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3343.96
//
Query:       CDO69033.1  [L=404]
Description: hypothetical protein BN946_scf184834.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-94  317.0   0.0    1.9e-94  316.3   0.0    1.3  1  CDC50     LEM3 (ligand-effect modulator 3) family / CDC50 fam


Domain annotation for each model (and alignments):
>> CDC50  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.3   0.0   1.1e-98   1.9e-94       6     280 .]      79     393 ..      76     393 .. 0.92

  Alignments for each domain:
  == domain 1  score: 316.3 bits;  conditional E-value: 1.1e-98
       CDC50   6 ksvkeleidYtsecataaesek.............................................easkekktCtvqftvpedlkapvyvyYeLtnf 59 
                 ++v e+++dYt +c+  +++++                                              ++++ ++C v+f+vp+d++ pv++yY+Ltnf
  CDO69033.1  79 RKVSEMSFDYT-DCELLQANNAsntstslsfstmpsnkfnyklrasdanapfnppewafidrsgadgVSNDTARQCVVRFDVPADMDTPVLLYYKLTNF 176
                 789********.**99998888999*****************************************98888889************************* PP

       CDC50  60 yQnhrryvkSrddsqlkgkaks.s.lksssssdCepletakekkekkkiiyPCGliAnslFNDtfslveessskltkvnltkkgIawksdkekkfknkt 156
                 yQnhrryvkS+d++ql+g+ +s s lk     dC+pl      ++  ki+yPCGliAnslFNDtf+   ++s+++++ n ++kgIaw+ ++ kk+ +  
  CDO69033.1 177 YQNHRRYVKSLDQNQLRGDRVSaSkLKG---GDCKPLGV---LND--KIVYPCGLIANSLFNDTFTNLVSTSDSTQTYNWSEKGIAWPGES-KKYAT-A 265
                 ********************76453432...37****54...333..79****************88777666789999***********9.89996.3 PP

       CDC50 157 kyealeevvkPpnWakk.pe....eteipelkenedfivWmrtAalptFrKlyrrindeedLkagtyevdiennfpvksFkGtKsivlsttswlGgknp 250
                   + l+e+++PpnWa++ p+    +t+ p+lk++e+f++WmrtA+lptF+Kl++r nd+e+L +g+y+++++ n+pv+sF+GtKsiv+st+sw+Ggknp
  CDO69033.1 266 PGNDLSEITPPPNWAQRfPQgytnSTPPPNLKDDEHFQNWMRTAGLPTFTKLFGR-NDNEKLLKGRYQITVNLNYPVRSFSGTKSIVISTVSWMGGKNP 363
                 34899*********999944566699*****************************.999**************************************** PP

       CDC50 251 flgiaYlvvGgiclvlaivflvthlikprk 280
                 flg+aY++ ++++++l+i+ +++hlikprk
  CDO69033.1 364 FLGWAYVAAASLLVLLGILGTIRHLIKPRK 393
                 ****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2859.16
//
Query:       CDO69034.1  [L=843]
Description: hypothetical protein BN946_scf184834.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-64  216.6  50.2    5.2e-64  216.6  50.2    3.0  2  HOOK            HOOK protein
    0.00053   19.7  12.7    0.00053   19.7  12.7    5.2  4  Filament        Intermediate filament protein
     0.0095   16.0  92.7      0.034   14.2  12.5    8.4  7  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
        0.4   11.0  36.8      0.068   13.5   2.7    7.5  8  TSC22           TSC-22/dip/bun family
        1.4    9.0  28.8       0.04   14.0   2.1    6.1  5  NYD-SP28_assoc  Sperm tail C-terminal domain
        2.2    8.6  10.7      0.096   13.0   0.4    3.5  3  Imm7            Immunity protein 7


Domain annotation for each model (and alignments):
>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6  50.2   1.7e-67   5.2e-64       3     570 ..      11     603 ..       9     612 .. 0.90
   2 !    2.6  19.7    0.0098        29     478     693 ..     613     836 ..     608     838 .. 0.67

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 1.7e-67
        HOOK   3 esLlkwlqtfnlsapcktvedlsdGvalaqvlnqidpewFtesWlskikedvgdNwrLkvsNlkkilesvleYykevLnqqlsdellPdvnkiaeksda 101
                 ++ l+++ tf+l+ p++++ dlsdG+al ++l+ +d+++F ++   + +++ +dNw L+ s lk++ + +++Y++evL+q+    ++Pd++ i++ +++
  CDO69034.1  11 NAFLSFFATFDLARPVTSIADLSDGAALLEILSVVDADYFRQA--GRPSAQLSDNWVLRFSTLKRLYRLMTQYFSEVLHQPTGALDIPDLQAISKDYNV 107
                 67899************************************97..788999************************************************ PP

        HOOK 102 kELgrLlQLiLGcAvnCekKqeyIqqimtleEsvqhvvmtaiQellske.glaslseeslgeldsqlrklleelkeaqeekdelaQrcheldkqlsllq 199
                 +    +  L +  Av+Ce+ q  I++i +l Es qh +m+ i +++sk+ ++a ++ e++ + d +  ++ +e +   +ek++l+   + l ++  +lq
  CDO69034.1 108 NATLIMCRLAIVIAVQCENNQTIIERIQKLTESEQHSLMRVIEQVMSKVrSSADAGMEVSVTEDDHYYQIQSERSRILSEKETLEKVYQALLEEHRALQ 206
                 *************************************************88899999999999999999999999999999999999999999999999 PP

        HOOK 200 eEknaLlaenkklqerlselengeesgtiqltskkylelqkqleqlqeelfrlEtarddyrlkceeleke...vlelqqrneeltslaeEaqaLkDEvD 295
                      +++e++++ ++l + +   +s+ +   s+     + ++++l+ +l + E   d++ +   el+k+   v++l  + +el+++a+Ea+ LkD +D
  CDO69034.1 207 TNFDDVVSEKEEALAQLRQAQREADSKRV--DSRGDAMYRAEIDRLRADLQKSE---DNLAMAETELDKQtllVTDLTRKVDELQAKADEAARLKDQLD 300
                 99999999999999999999988888888..7788888999******9988877...667777777777744478************************ PP

        HOOK 296 vLresadkvkkleatvetykkkledlndLrrqvklleernaeYlqktveleeelkkanalrsqlelykkqvqelhkklseeskkadklefelkkleekl 394
                   r++ad+++k e+ +e ykkkl++ +d+r+qvk le +na+ + k++ leee +k++a +  +e+yk q+ el++k s+ sk  d l+fel + ++kl
  CDO69034.1 301 EYRHAADRLQKTENVMEKYKKKLQEAADMRQQVKALEKQNADLVDKNAALEEEYRKVAAFKPLMESYKSQIAELESKTSARSKEIDALKFELDQTKTKL 399
                 *************************************************************************************************** PP

        HOOK 395 ealqkekerllaerdaLketneELkcaqlqqkelsqadalaskss..ssgenlaae.............................llpaevreklirLq 462
                 ++   e+ +  +  +  +e + EL+++       s+a +  ++ +  + +e ++ae                              + ++++ ++ +Lq
  CDO69034.1 400 KVTLEERAKDSETLELYQERVRELELSSQRPVAASRARPQPNGDAegNMTEFTEAEllggaaaprddvdediaglgeeldsaitgTTMTDLKLQVRKLQ 498
                 ******99999999999999999999776666655555333333312455566666**************************8887788999999**** PP

        HOOK 463 hENKmLklkqegseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeqle 561
                 +E  + + +  + +  ++  l++lledanr k + e +  +a+   l L++++ee++  ++  g  ae +++l+++l+e +++l ++ +e ++ +  +e
  CDO69034.1 499 RELEAVRKN--EADASRVLVLENLLEDANRMKARYEADYLAAHREKLVLQNELEEIRSGKAL-GDGAEAAIALRQRLNETVDELDNLRKEHTELEVKFE 594
                 **9999554..444699999******************9999988899********987776.5556667****************************9 PP

        HOOK 562 elepklssn 570
                  ++++l+ +
  CDO69034.1 595 AMSKELTIA 603
                 999887765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.0098
        HOOK 478 ekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeqleelepklssnk.qkie 575
                 ++l  l++l e  n+ k eLe e    + +i+eL+ +        + q  + +   ll +k++ + e + + +  lq+ +++   ++ ++s +     e
  CDO69034.1 613 DQLDILATLRESVNEDKAELEAEVERLRAQIKELSDK-------NKMQLEQIN--GLLLEKVNLQSEGIDQRERMLQRERAIGRPRDLRASMSGrDLPE 702
                 4555556666666666666666666666666666666.......444444444..47777788888888888887777777766666655555534556 PP

        HOOK 576 eleeaLkkkdedlkameerYkkyve...KAksViktLdpkqnpaspaevq.....alknqlaekdkkieslere.vekakl......lreqeEkLivsA 659
                 ++++ + +  e++  + e+Yk   e   KAk  ik  d   +++ ++ +      a ++  +  + +i+ le++ + +++l      +   e  L+ s 
  CDO69034.1 703 DIKQRMLALHEENVSLREQYKTAQEkllKAKAFIKQQDKLFKEEHAKSIGgvpagAFEEAENSYRSQIKILEEDiARQKRLmadavnRYRREQTLMLSV 801
                 67777777777777888899987553337*******99877666666655111114444444455899******55555558888855566778***** PP

        HOOK 660 wYnlglalqreavderlaalsg.qgqsFLarQRqa 693
                  + ++++l r+   +  +++s  +  s+L +QRq 
  CDO69034.1 802 LHGMSMKLVRDQLGSGGKQQSRpEPTSWLKQQRQN 836
                 ***********99987766665699********96 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1  28.1         6   1.8e+04     125     274 ..     176     326 ..     120     334 .. 0.55
   2 !   19.7  12.7   1.8e-07   0.00053      19     139 ..     332     507 ..     327     515 .. 0.89
   3 ?   -3.1  32.8       1.5   4.6e+03      56     227 ..     494     681 ..     493     752 .. 0.59
   4 ?    1.1   0.6     0.081   2.4e+02     254     285 ..     760     791 ..     744     801 .. 0.78

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 6
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHH CS
    Filament 125 kvesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkldLteilkeira.qyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelr 222
                 +++s +  +   k+  e+  + l +++   ++ + d++   + +e+l+++r+ q e+  ++  +  +++y++ +++l+   +k++++l  a++e+ +  
  CDO69034.1 176 QIQSERSRILSEKETLEKVYQALLEEH-RALQTNFDDVV-SEKEEALAQLRQaQREADSKRVDSRGDAMYRAEIDRLRADLQKSEDNLAMAETELDKQT 272
                 444444455555555555555555555.55555555433.34578888888437888888888888889999999999999999999999999998888 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHH CS
    Filament 223 rqiqsleieleslkkqkasleaqlaeleerleaeleklq...eklseleeelaei 274
                   +  l+ ++++l+++++   a+l++  +++ +++++lq   + +++  ++l+e+
  CDO69034.1 273 LLVTDLTRKVDELQAKADEA-ARLKDQLDEYRHAADRLQkteNVMEKYKKKLQEA 326
                 88888888777777654432.3334433333333333330003333333333333 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.8e-07
                 XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.................... CS
    Filament  19 kVraLEqenkeLeakieeleekk..saevsklkelyekeleelrkqldeltkerarlqleldnlreele.dlrkkyeke.................... 94 
                 +V+aLE++n++L  k ++lee+    a+ + l e y+++++el ++  + +ke + l+ eld+++++l+ +l ++ ++                     
  CDO69034.1 332 QVKALEKQNADLVDKNAALEEEYrkVAAFKPLMESYKSQIAELESKTSARSKEIDALKFELDQTKTKLKvTLEERAKDSetlelyqervrelelssqrp 430
                 7**************99999984336777889999*************************999999987345555555499****************** PP

                 ..............................XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
    Filament  95 ..............................lnkreevEaelkalrkdldeatl..arvdLekkvesLkeelaflkkv 139
                                               ++ r++v++++++l  +ld a    + +dL  +v +L+ el+ ++k+
  CDO69034.1 431 vaasrarpqpngdaegnmtefteaellggaAAPRDDVDEDIAGLGEELDSAITgtTMTDLKLQVRKLQRELEAVRKN 507
                 ******************************9******************997522678***************9997 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
                 XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXX.......................XXXXXXXXXXXXXXXX CS
    Filament  56 leelrkqldeltkerarl..qleldnlreeledlrkkyeke....lnkreevEaelkalr.......................kdldeatlarvdLekk 125
                 +++l+++l+++ k++a +  +l l+nl e++++++++ye +     +++  + +el+++r                        +ld++  + ++Le k
  CDO69034.1 494 VRKLQRELEAVRKNEADAsrVLVLENLLEDANRMKARYEADylaaHREKLVLQNELEEIRsgkalgdgaeaaialrqrlnetvDELDNLRKEHTELEVK 592
                 688999999888776544116889***************998877677788899999999996666666666666666666666666666666777777 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHH CS
    Filament 126 vesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrq 224
                  e++ +el + k+     v++ q  + +++  +v ++ k +L++ ++ +raq  el +kn++++e+     le+++ ++e  +           +  r+
  CDO69034.1 593 FEAMSKELTIAKSDLTL-VNKDQLDILATLRESV-NEDKAELEAEVERLRAQIKELSDKNKMQLEQINGLLLEKVNLQSEGID-----------QRERM 678
                 77777777776665433.3333333323333333.355666777777777777777777777777776666666655554333...........33333 PP

                 HHH CS
    Filament 225 iqs 227
                 +q+
  CDO69034.1 679 LQR 681
                 332 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.081
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 254 eaeleklqeklseleeelaeireemarqlreY 285
                 e++ ++++++++ lee++a+ ++ ma  ++ Y
  CDO69034.1 760 EEAENSYRSQIKILEEDIARQKRLMADAVNRY 791
                 56667778888888888888888887777776 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  14.7     0.039   1.2e+02      14     117 ..     178     287 ..     167     288 .. 0.87
   2 !    5.9  24.8    0.0041        12      17     124 ..     240     345 ..     221     352 .. 0.73
   3 !    6.6   4.6    0.0026       7.7      54     111 ..     352     409 ..     347     416 .. 0.87
   4 ?   -1.4   3.5      0.74   2.2e+03      58      91 ..     486     519 ..     478     549 .. 0.57
   5 !   14.2  12.5   1.1e-05     0.034      53     127 ..     573     658 ..     562     660 .. 0.84
   6 !    5.7   2.7    0.0049        15      62     106 ..     704     748 ..     701     751 .. 0.85
   7 !   12.2   0.1   4.8e-05      0.14      13      50 ..     759     796 ..     756     811 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.039
  TPR_MLP1_2  14 keekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiae...lkaeaesakaeleeseesweeqkeeleke...ls 106
                 ++e ++  ++ ++l++  ++  e+ ++ q ++   + +++e++ +l+++  e+++ + + +     +ae ++++a+l++se +++  ++el+k+   ++
  CDO69034.1 178 QSERSRILSEKETLEKVYQALLEEHRALQTNFDDVVSEKEEALAQLRQAQREADSKRVDSRGdamYRAEIDRLRADLQKSEDNLAMAETELDKQtllVT 276
                 56667777888899999999999999***************************99998886433389**************************966668 PP

  TPR_MLP1_2 107 elekriedlne 117
                 +l++++++l++
  CDO69034.1 277 DLTRKVDELQA 287
                 99999999986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0041
  TPR_MLP1_2  17 keeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedl 115
                 ++ ++a++  l+ dl+k ++ ++ a+    ++ ++  + ++++ +l ++++e+     +l + +  a   l++ e+ +e+ k++l+ e ++++++++ l
  CDO69034.1 240 DAMYRAEIDRLRADLQKSEDNLAMAETELDKQTLLVTDLTRKVDELQAKADEAARLKDQLDEYRH-AADRLQKTENVMEKYKKKLQ-EAADMRQQVKAL 336
                 46789999999999999999999999988888888888888888777777777777766665444.44668888888888888886.567889999999 PP

  TPR_MLP1_2 116 neqNklLhd 124
                 ++qN+ L d
  CDO69034.1 337 EKQNADLVD 345
                 999987765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0026
  TPR_MLP1_2  54 edvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekr 111
                 e+ ++++a++  ++++k++iael+++  + ++e+++ + +++++k++l+  l+e  k 
  CDO69034.1 352 EEYRKVAAFKPLMESYKSQIAELESKTSARSKEIDALKFELDQTKTKLKVTLEERAKD 409
                 56778889999999**********************************9999886655 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.74
  TPR_MLP1_2  58 elqalreelnelkaeiaelkaeaesakaeleese 91 
                 ++++l+ ++ +l+ e++ ++++  +a+  l  + 
  CDO69034.1 486 TMTDLKLQVRKLQRELEAVRKNEADASRVLVLEN 519
                 6777888888888888887777666666544333 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 1.1e-05
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakael...........eeseesweeqkeelekelselekriedlneqNklLhdQlE 127
                 +e+v+el +lr+e+ el+ + + + +e+  ak++l           ++ +es +e k ele e++ l+++i++l+++Nk+ ++Q+ 
  CDO69034.1 573 NETVDELDNLRKEHTELEVKFEAMSKELTIAKSDLtlvnkdqldilATLRESVNEDKAELEAEVERLRAQIKELSDKNKMQLEQIN 658
                 68999*********999999999999999999886222222222226789*******************************99995 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0049
  TPR_MLP1_2  62 lreelnelkaeiaelkaeaesakaeleeseesweeqkeelekels 106
                 +++++  l +e  +l+++ ++a+++l ++++ +++q + +++e +
  CDO69034.1 704 IKQRMLALHEENVSLREQYKTAQEKLLKAKAFIKQQDKLFKEEHA 748
                 688888889999999999999999999999999999999999866 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 4.8e-05
  TPR_MLP1_2  13 lkeekeeaeaklqklqedlekqaeiakeaqqkYerelv 50 
                  +e +++++++++ l+ed+  q++++++a ++Y re +
  CDO69034.1 759 FEEAENSYRSQIKILEEDIARQKRLMADAVNRYRREQT 796
                 578999*****************************965 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.4   7.2e+03      30      30 ..     289     289 ..     275     319 .. 0.55
   2 ?    5.1   0.4    0.0096        29      13      36 ..     330     353 ..     326     362 .. 0.88
   3 ?    5.9   0.1    0.0054        16      17      42 ..     365     390 ..     357     399 .. 0.86
   4 ?    0.2   0.1      0.32   9.5e+02      22      43 ..     486     507 ..     484     513 .. 0.85
   5 ?    5.3   1.3    0.0084        25      14      50 ..     577     616 ..     573     622 .. 0.80
   6 ?   13.5   2.7   2.3e-05     0.068      15      45 ..     635     666 ..     632     680 .. 0.79
   7 ?    1.5   0.1      0.13   3.8e+02      26      47 ..     704     725 ..     700     736 .. 0.73
   8 ?   -4.0   0.1         6   1.8e+04      20      31 ..     767     778 ..     761     781 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
       TSC22  30 n 30 
                  
  CDO69034.1 289 A 289
                 1 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0096
       TSC22  13 rEeVevLkekIkeLeernseleeE 36 
                 r +V  L ++ ++L+++n++leeE
  CDO69034.1 330 RQQVKALEKQNADLVDKNAALEEE 353
                 788999999999999999999999 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0054
       TSC22  17 evLkekIkeLeernseleeENslLka 42 
                 e  k++I+eLe++ s+  +E   Lk 
  CDO69034.1 365 ESYKSQIAELESKTSARSKEIDALKF 390
                 7789************9999999985 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.32
       TSC22  22 kIkeLeernseleeENslLkal 43 
                 + ++L  ++++l++E +  +++
  CDO69034.1 486 TMTDLKLQVRKLQRELEAVRKN 507
                 6789999*******99888875 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.0084
       TSC22  14 EeVevLkekIkeLeernseleeENslLka...laspeqle 50 
                 +e ++L+++ +eLe + +++ +E ++ k+   l++++ql 
  CDO69034.1 577 DELDNLRKEHTELEVKFEAMSKELTIAKSdltLVNKDQLD 616
                 6889*********************999722245566665 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 2.3e-05
       TSC22  15 eVevLkekIkeLeerns.eleeENslLkalas 45 
                 eVe L+ +IkeL ++n+ +le+ N lL + ++
  CDO69034.1 635 EVERLRAQIKELSDKNKmQLEQINGLLLEKVN 666
                 9**************97589999999955444 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.13
       TSC22  26 LeernseleeENslLkalaspe 47 
                   +r+ +l eEN  L+++    
  CDO69034.1 704 IKQRMLALHEENVSLREQYKTA 725
                 5678999999999999876544 PP

  == domain 8  score: -4.0 bits;  conditional E-value: 6
       TSC22  20 kekIkeLeerns 31 
                 +++Ik Lee+++
  CDO69034.1 767 RSQIKILEEDIA 778
                 788888888876 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.9     0.052   1.5e+02      27      47 ..     173     193 ..     169     207 .. 0.88
   2 ?   14.0   2.1   1.3e-05      0.04      21      52 ..     312     343 ..     309     346 .. 0.92
   3 ?    2.9   0.6      0.04   1.2e+02      33      54 ..     569     591 ..     567     596 .. 0.77
   4 ?    4.9   1.0    0.0097        29      34      54 ..     628     648 ..     624     655 .. 0.87
   5 ?   -2.0   0.1       1.3     4e+03      41      54 ..     707     720 ..     703     725 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.052
  NYD-SP28_assoc  27 kYhevLteRaklieetesLek 47 
                     +Y+++  eR+ +++e e Lek
      CDO69034.1 173 HYYQIQSERSRILSEKETLEK 193
                     799999**********99998 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.3e-05
  NYD-SP28_assoc  21 lekaLekYhevLteRaklieetesLekqNeeL 52 
                      e+ +ekY + L+e a + +++++LekqN+ L
      CDO69034.1 312 TENVMEKYKKKLQEAADMRQQVKALEKQNADL 343
                     5789**************************98 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.04
  NYD-SP28_assoc  33 teR.aklieetesLekqNeeLrn 54 
                     ++R  ++++e + L+k+++eL+ 
      CDO69034.1 569 RQRlNETVDELDNLRKEHTELEV 591
                     55523688999**********86 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0097
  NYD-SP28_assoc  34 eRaklieetesLekqNeeLrn 54 
                     ++a+l +e+e L++q +eL +
      CDO69034.1 628 DKAELEAEVERLRAQIKELSD 648
                     899****************54 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.3
  NYD-SP28_assoc  41 etesLekqNeeLrn 54 
                     ++ +L+++N  Lr+
      CDO69034.1 707 RMLALHEENVSLRE 720
                     55678888888875 PP

>> Imm7  Immunity protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3      0.29   8.7e+02      15      47 ..     135     169 ..     127     203 .. 0.65
   2 ?   -1.7   0.3       1.1   3.4e+03      14      38 ..     286     310 ..     265     336 .. 0.63
   3 ?   13.0   0.4   3.2e-05     0.096       8      54 ..     619     662 ..     616     684 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.29
        Imm7  15 ee..dddeallesivkeieskideldysselvdLr 47 
                 ++  + ++++l ++++++ sk+++ + +  +v++ 
  CDO69034.1 135 QKltESEQHSLMRVIEQVMSKVRSSADAGMEVSVT 169
                 444467889999999***99999877444444433 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
        Imm7  14 aeedddeallesivkeieskideld 38 
                 +++ d++a+l+ +++e +++ d+l+
  CDO69034.1 286 QAKADEAARLKDQLDEYRHAADRLQ 310
                 3334555555555555555555555 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 3.2e-05
        Imm7   8 ltiqesaeedddeallesivkeieskideldysselvdLraknGeyy 54 
                 +t++es++  +d+a+le  v++++++i+el  +++ ++L+  nG   
  CDO69034.1 619 ATLRESVN--EDKAELEAEVERLRAQIKELS-DKNKMQLEQINGLLL 662
                 58889988..899******************.99**********754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3052  (0.170227); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                        91  (0.00507558); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.15u 0.42s 00:00:02.57 Elapsed: 00:00:00.67
# Mc/sec: 3802.15
//
Query:       CDO69035.1  [L=381]
Description: hypothetical protein BN946_scf184834.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-81  272.4   0.0    2.4e-81  272.2   0.0    1.0  1  RTC         RNA 3'-terminal phosphate cyclase
    6.6e-20   71.6   0.1    1.1e-19   70.8   0.1    1.4  1  RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert d
  ------ inclusion threshold ------
      0.051   13.7   0.0       0.11   12.6   0.0    1.5  1  DUF4111     Domain of unknown function (DUF4111)


Domain annotation for each model (and alignments):
>> RTC  RNA 3'-terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.2   0.0     4e-85   2.4e-81       2     222 .]      28     361 ..      27     361 .. 0.97

  Alignments for each domain:
  == domain 1  score: 272.2 bits;  conditional E-value: 4e-85
                 TTTSTHHHHHHHHHHHHH---EEEESTTTTSSS-S--HHHHHHHHHHHHHHT-EEE--STT-SEEEEE---.--.-SEEEEEEESSEBHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxx RF
         RTC   2 gegGgqiLRtalaLsaltgkpvrIenIRanRkkPGLraqhltavrllakitnaevegaeigsteleFkPge.ik.ageyevdigtAGsitlllqtllpl 98 
                 +egGgq+LR a+aLsal+++p+ I++IRanR+ PGL++qh++++rl+a+i++a+++g e gs+++ F+P++  + ++ +++d gtAGsi+lllq++lp+
  CDO69035.1  28 LEGGGQLLRVAVALSALLSRPIAIDHIRANRSPPGLKHQHAAGLRLAAEICSARLDGCETGSSSIVFQPTTkPQlSKCLTADPGTAGSIALLLQVALPC 126
                 79*******************************************************************9855656899******************** PP

                 HTTSS....S-EEEEEEEBSBBTTS--HHHHHHTHHHHHHH.HT.-EEEEEEEE--BTTTB-EEEEEEEE-.-S.---EB................... CS
                 xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx................... RF
         RTC  99 llfak....kpseltlkGgTnvsaapsvdylktvllpllkr.fgvlelelelkkrGfypkGgGevelevepskk.lkpie................... 172
                 l+f+      ps+l l+GgTn+ +ap++dy+++v+lp+l+  fg l+ +l++ krG+ypkGgGev+++++ ++  l++++                   
  CDO69035.1 127 LIFSPdatvPPSRLILRGGTNAIQAPQIDYTQHVFLPFLRDhFG-LRPTLNVIKRGYYPKGGGEVHVSIPHVRGpLPAVTltargpvkavfgrsyvagl 224
                 ****9555556*****************************9899.7***********************988867****9******************* PP

                 .......................................................................................BSS-HHHHHHHH CS
                 .......................................................................................xxxxxxxxxxxx RF
         RTC 173 .......................................................................................acvDehlqdqli 184
                                                                                                        +cvDe++qdq+i
  CDO69035.1 225 pkglaesmrsaakellvesgldsdiikidalrerpsdavgsgsgivlwaemedgclmagsalgrkgtesskvgrdaareltanlahgGCVDEYMQDQMI 323
                 *************************************************************************************************** PP

                 HHHHHHT.-EEEEESS--HHHHHHHHHHHHHSS-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RTC 185 lfmaLakgksrirvaeltlhtetairvieqflgvkfkv 222
                 +f+aLa+gksr++++++tlht+tai+v+eq++g +f+v
  CDO69035.1 324 IFLALARGKSRVKTGPITLHTRTAIWVVEQLTGFRFHV 361
                 ***********************************986 PP

>> RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   1.8e-23   1.1e-19       2     102 ..     208     308 ..     207     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.8e-23
                 S----SEEEEEEEEESS-THHHHHHHHHHHHHHTTTSSEEE.EEEE.EE-CGGC-SS-EEEEEEEEE-T.TS-EEEEEEEE-TT--HHHHHHHHHHHHH CS
  RTC_insert   2 drGrvkrirGvafaarvspsvanrmveaargvLnkllpdvy.iytdvvkegkesgkspGfgisLvaetttegvllgaealgekgvppedvGeeaaeeLl 99 
                  rG vk + G +++a++++ +a+ m +aa+++L + + d + i++d+ +e ++ +++ G+gi+L+ae + +g+l+ ++alg+kg+++ +vG++aa+eL 
  CDO69035.1 208 ARGPVKAVFGRSYVAGLPKGLAESMRSAAKELLVESGLDSDiIKIDALRERPSDAVGSGSGIVLWAEME-DGCLMAGSALGRKGTESSKVGRDAARELT 305
                 69*******************************999885552589999999999**************9.5***************************9 PP

                 HHH CS
  RTC_insert 100 eei 102
                 +++
  CDO69035.1 306 ANL 308
                 876 PP

>> DUF4111  Domain of unknown function (DUF4111)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05      0.11      22      64 ..     313     355 ..     301     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
                 -SSHHHH-HHHHHHHHHHHHHHHHHS----HHHHHHHHGGGS- CS
     DUF4111  22 lleeieederyvvLtLaRvlatletgeilsKdeaaewalerlP 64 
                 +++e  +d++ + L+LaR  + ++tg i+     a w++e+l+
  CDO69035.1 313 CVDEYMQDQMIIFLALARGKSRVKTGPITLHTRTAIWVVEQLT 355
                 6778889*********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2663.57
//
Query:       CDO69036.1  [L=534]
Description: Glycoside Hydrolase Family 13 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-47  160.5   0.1    1.2e-46  159.8   0.1    1.3  1  Alpha-amylase  Alpha amylase, catalytic domain
    4.4e-16   58.9   0.1      8e-16   58.1   0.1    1.4  1  DUF1966        Domain of unknown function (DUF1966)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.1   1.4e-50   1.2e-46       1     337 []      59     386 ..      59     386 .. 0.87

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.4e-50
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE........-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCH CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk........spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkesl 88 
                    G+++ i + LdY+++ G+taiw+sP+ +        + + +hgY+iad  k++++fGt++dlk+L++++h++g+++++D+VvN     +       
     CDO69036.1  59 GTWNTIKDNLDYIQNAGFTAIWISPVSQnyqgprtpYGDPYHGYWIADASKLNDRFGTADDLKALSDELHSRGMYLMVDVVVNNVMALST------ 148
                    899*******************************997778*******************************************6543333...... PP

                    HSTTSGGGCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCC CS
  Alpha-amylase  89 kkkgepkrdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskvea 183
                       +++ + y++ +e + ++  p +w     ++  e +++ ++        +lpd nt+ ++v+ +    +k +++++ idG+R+D  k v +++ 
     CDO69036.1 149 ---KPDLSTYMFKQESQYHPYCPIDWG----NTTSEQNCWLGD-----LNVTLPDVNTQDPTVVSAYSAWIKALVQEFnIDGLRIDG-KFVRMATI 231
                    ...233566777666666677888886....666666777765.....6789*****************8888888888*******5.67777555 PP

                    C...................HCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HH CS
  Alpha-amylase 184 l...................esngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisak 260
                                        + +++f+ +f  a+         v+++gEv++++    ++ + +++  l+ +l++p +++  +a+       +++ 
     CDO69036.1 232 HtapshfdlivrhfpyaaakHVDMQFWPQFCGAAG--------VYCIGEVFDADAG--QALQWQGKQALDAILNYPAYNALVSAF--AIPGAQNMS 315
                    57789999999999999988888999999998888........89*******9998..66666677777777*********9999..6667778** PP

                    HHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----STT CS
  Alpha-amylase 261 klkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggkdp 337
                    +l +++++++++ ++  +   +fl+  D +R +s   d +     +l +a+++  +++G+p+ YyG+E+g+ g  dp
     CDO69036.1 316 ALTDMIAQVKQKSSD-PTLLGNFLEDQDVPRWASISVDPQ-----SLWNAMTFNWMSDGIPILYYGQEQGFNGNADP 386
                    **************9.9*****************999888.....8**************************99876 PP

>> DUF1966  Domain of unknown function (DUF1966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1   8.9e-20     8e-16       3      90 .]     407     490 ..     405     490 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 8.9e-20
     DUF1966   3 ysdkstlalrKgpegsqvvtvlsnkGssgssytlslkssgyaagtevvdvlsCksvtvdssgeltvtmek.GePrvlvpksklegsglC 90 
                  s+++ +a+ Kg+    vvtvl+n Gs   ++t++ + + ++++ + +d+l+C+++  +s+g+++v+++k G P +lvp++ l++sglC
  CDO69036.1 407 SSTQEAIAFMKGN----VVTVLTNVGSPPANVTIAAR-TPFSNSLSTTDILTCTQFAIGSNGSVEVEYSKgGRPVILVPDDLLDNSGLC 490
                 577899*******....*******************8.******************************99789**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3656.35
//
Query:       CDO69037.1  [L=744]
Description: hypothetical protein BN946_scf184834.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-14   51.2   1.7    2.1e-13   49.9   1.7    1.8  1  G-patch      G-patch domain
    2.7e-07   30.5   1.3    1.3e-06   28.4   1.3    2.2  1  G-patch_2    G-patch domain
    0.00048   19.9   0.0      0.013   15.3   0.0    2.5  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
     0.0055   16.3   2.5      0.013   15.1   2.5    1.6  1  RED_N        RED-like protein N-terminal region
     0.0072   16.6   0.5      0.014   15.7   0.5    1.5  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.067   13.5   0.3       0.13   12.6   0.3    1.4  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
       0.27   11.0   0.5       0.48   10.2   0.5    1.4  1  zf-C2H2_11   zinc-finger C2H2-type


Domain annotation for each model (and alignments):
>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   1.7   8.3e-17   2.1e-13       2      44 ..     672     714 ..     671     715 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 8.3e-17
     G-patch   2 sniGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGlGa 44 
                 sn+G k+L+ mGWk+GqGLG +++G+++Pie+ i   + GlGa
  CDO69037.1 672 SNVGNKLLKMMGWKEGQGLGTSGEGRVDPIETAIYAAGVGLGA 714
                 8*****************************************9 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   1.3   4.9e-10   1.3e-06      17      60 ..     674     717 ..     671     718 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 4.9e-10
   G-patch_2  17 FGaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGakpa 60 
                  G+ lL+ MGWkegqg g++++grv+p+e    +++ GLGa +a
  CDO69037.1 674 VGNKLLKMMGWKEGQGLGTSGEGRVDPIETAIYAAGVGLGAAKA 717
                 5899*************************************875 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11   2.7e+02       5      37 ..     101     135 ..     100     139 .. 0.81
   2 !   15.3   0.0   4.9e-06     0.013      26      58 ..     268     301 ..     264     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
                 SETTTSSHHHHHHHHHT.TSCEEEEEEEEE.TTTS CS
       RRM_1   5 nLppdvteeeLkelFsk.fGpiksiklvrd.etgk 37 
                 +L pd te+++ +++     +i+s++++rd  tg+
  CDO69037.1 101 GLDPDFTESDMQAYLTSnSCSIESVTIIRDrTTGT 135
                 5889999999999887767899********55554 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.9e-06
                 EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHH CS
       RRM_1  26 ksiklvrd.etgkskgfafVeFeskedAekAlea 58 
                 ++i l++d  t  s gfafVeF +  +A++ l+a
  CDO69037.1 268 RRIILIKDkVTTASWGFAFVEFVDVQSAAAVLAA 301
                 567789999********************99875 PP

>> RED_N  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.5   5.1e-06     0.013       7      38 ..     601     633 ..     595     650 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX... CS
       RED_N   7 aklkkqeeekeeelaekYrDRAkERRegkn.ad 38 
                 ++++ +++++++++++kYrDRA ERR  +n +d
  CDO69037.1 601 KARAARAKAEQASQQPKYRDRASERRIMHNqPD 633
                 445556777888999***********9888555 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   5.4e-06     0.014       3      23 ..     561     581 ..     559     586 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.4e-06
                  BBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkS 23 
                   C lC+++Fks  +l+ H k 
   CDO69037.1 561 TCLLCARQFKSLDQLKRHNKE 581
                  6*****************886 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3     5e-05      0.13      50      82 ..     559     591 ..     553     601 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
   zf-C2H2_2  50 kleClyCekefkslealreHmkkk.gHckineee 82 
                  l+Cl+C ++fksl++l+ H k+   H+k n+++
  CDO69037.1 559 ALTCLLCARQFKSLDQLKRHNKESdLHKK-NYKD 591
                 589*****************977625776.5654 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   0.00019      0.48       1      23 [.     556     578 ..     556     580 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
  zf-C2H2_11   1 destcqCleCGlcftSqlsLsRH 23 
                 d++++ Cl+C + f S   L+RH
  CDO69037.1 556 DTNALTCLLCARQFKSLDQLKRH 578
                 78999****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4670.45
//
Query:       CDO69038.1  [L=82]
Description: hypothetical protein BN946_scf184834.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.002   18.0   0.0     0.0023   17.8   0.0    1.1  1  NDUF_B4   NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)
  ------ inclusion threshold ------
      0.049   13.8   0.1      0.067   13.3   0.1    1.1  1  DUF2545   Protein of unknown function (DUF2545)


Domain annotation for each model (and alignments):
>> NDUF_B4  NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-07    0.0023      57     106 ..       9      56 ..       4      72 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-07
                 --HHHHHHHHHTTTTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     NDUF_B4  57 edPallrWvyarsanvypnfrptpktsllGalvgvvpllflyyvlktdrd 106
                 +dPa+ rW   r  +vy+ fr++ +t     ++g+++  + +y + +++d
  CDO69038.1   9 TDPAVERWNTMR-ESVYKYFRFNSRTARQ-SILGMIVFPAAIYAIAAHQD 56 
                 69******6666.99******98877655.44555555555554444444 PP

>> DUF2545  Protein of unknown function (DUF2545)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.5e-06     0.067      16      46 ..      22      52 ..      18      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-06
     DUF2545 16 slyigsvlgavaaissllgmviLaaliyfft 46
                s+y + + +  +a  s+lgm++  a+iy ++
  CDO69038.1 22 SVYKYFRFNSRTARQSILGMIVFPAAIYAIA 52
                89**************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.36s 00:00:00.93 Elapsed: 00:00:00.58
# Mc/sec: 427.98
//
Query:       CDO69039.1  [L=233]
Description: hypothetical protein BN946_scf184834.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-68  230.1   0.1    1.7e-68  229.8   0.1    1.1  1  COQ7        Ubiquinone biosynthesis protein COQ7
  ------ inclusion threshold ------
      0.028   12.9   0.4      0.037   12.5   0.4    1.1  1  NUT         NUT protein
      0.028   14.6   0.1        4.1    7.6   0.0    2.4  2  Ferritin_2  Ferritin-like domain


Domain annotation for each model (and alignments):
>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.8   0.1   2.8e-72   1.7e-68       2     171 ..      62     232 ..      61     233 .] 0.97

  Alignments for each domain:
  == domain 1  score: 229.8 bits;  conditional E-value: 2.8e-72
        COQ7   2 ldrllRvdhaGElgAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeellkerrvrpslllplwkvagfalGaltallGkeaamacteavEtvi 100
                 l+++lRvd+aGEl+A++iYkgq++vl  +dp + +l+++m++qEk+Hla++++++ ++rvrp+ll  + +++g++lGa+tal+G+eaamacteavEtvi
  CDO69039.1  62 LESALRVDQAGELAANWIYKGQHDVL-GRDPATGHLIQDMWDQEKKHLAVMNKMQIQHRVRPTLLWEVARLGGYGLGAVTALMGREAAMACTEAVETVI 159
                 6899*********************9.888888****************************************************************** PP

        COQ7 101 geHYneqlreleelee..eedkelleiikqfrddEleHldtAvendaekapaykllsaviklgcrvaiavaer 171
                 geHY++ql+  e+l +  ++ + l+++i++frddEleHld+Avend++kapa++lls+v+ +gc+vai++++r
  CDO69039.1 160 GEHYDDQLKAFEQLPPdhPSVPLLKQVITEFRDDELEHLDIAVENDSQKAPAHALLSTVVGAGCKVAIELCKR 232
                 ************987777999**************************************************98 PP

>> NUT  NUT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   6.1e-06     0.037     337     377 ..      21      61 ..       3      66 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.1e-06
         NUT 337 saslPrkaeskaqparlppprpqrlpetkaPkEiPPEavkE 377
                 + s+  +a++  ++a + p r q +  t +P++iPPE+ +E
  CDO69039.1  21 THSTTARAGAVPSSAYTDPARSQDPSTTTTPQDIPPEVRQE 61 
                 233345666666789999********************998 PP

>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00069       4.1      32      61 ..      86     115 ..      62     174 .. 0.67
   2 ?    5.4   0.1    0.0032        19      32      57 ..     176     201 ..     147     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00069
  Ferritin_2  32 kalldaevrevaeeiakheeaHveflkaal 61 
                   + d+++  ++++++++e++H+++++++ 
  CDO69039.1  86 VLGRDPATGHLIQDMWDQEKKHLAVMNKMQ 115
                 667799999****************99974 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0032
  Ferritin_2  32 kalldaevrevaeeiakheeaHvefl 57 
                 +  + +  ++v++e++++e +H+++ 
  CDO69039.1 176 DHPSVPLLKQVITEFRDDELEHLDIA 201
                 555566779*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.34s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 1309.55
//
Query:       CDO69040.1  [L=203]
Description: hypothetical protein BN946_scf184834.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1270.57
//
Query:       CDO69041.1  [L=745]
Description: hypothetical protein BN946_scf184834.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-36  123.5  23.4    2.7e-08   34.3   0.1    7.4  7  WD40        WD domain, G-beta repeat
    5.2e-12   45.5   0.2    1.1e-11   44.4   0.2    1.6  1  F-box-like  F-box-like
      6e-10   38.8   0.1    1.2e-09   37.8   0.1    1.5  1  F-box       F-box domain
    3.5e-05   22.7  10.2       0.12   11.0   0.1    4.7  4  Nup160      Nucleoporin Nup120/160
    0.00079   19.3   0.2     0.0037   17.1   0.0    2.2  2  F-box_4     F-box


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.2e-09   1.9e-05       3      38 .]     357     398 ..     355     398 .. 0.82
   2 !   19.8   0.0     3e-07    0.0011       3      38 .]     404     438 ..     402     438 .. 0.83
   3 !   34.3   0.1   7.5e-12   2.7e-08       1      38 []     442     478 ..     442     478 .. 0.95
   4 ?    5.4   0.1     0.011        39       6      24 ..     486     506 ..     483     520 .. 0.85
   5 ?    3.1   0.4     0.056     2e+02      31      38 .]     655     662 ..     653     662 .. 0.95
   6 !   20.6   0.3   1.6e-07   0.00058       1      38 []     666     702 ..     666     702 .. 0.85
   7 !   27.1   0.3   1.5e-09   5.2e-06       1      38 []     706     742 ..     706     742 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.2e-09
                 EEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 
                 ++rtl+GH ++v +l+fs   a      l++Gs+D+t r+W+
  CDO69041.1 357 TVRTLKGHtDGVMCLQFSETLAHpsfpvLITGSYDRTARVWN 398
                 689*****777****955555556666699***********8 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 3e-07
                 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 
                  +++l GH   +++l      ++    l++Gs+D+t r+W+
  CDO69041.1 404 EMHSLVGHtRAIRAL------QFdevkLITGSMDHTMRVWN 438
                 689*****555****......55555599***********8 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 7.5e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 gqcl++l+GH  +v +l  + d++ lasGs D+tv++W+
  CDO69041.1 442 GQCLKILEGHtEGVVCL--NFDSNVLASGSVDRTVKVWN 478
                 79********88899**..999999*************8 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.011
                 EEESS.SSEEEEE.EETTSSE CS
        WD40   6 tltGH.ssvtsla.fspdgaw 24 
                 tl+GH ++v++++ ++++g+ 
  CDO69041.1 486 TLRGHcDWVNAVQlWDSNGTS 506
                 89***777****999999876 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.056
                 TSEEEEEE CS
        WD40  31 DgtvriWd 38 
                 D+t++iWd
  CDO69041.1 655 DNTIKIWD 662
                 9******9 PP

  == domain 6  score: 20.6 bits;  conditional E-value: 1.6e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+ +rtl GH  +v+++   +d   l+sGs D+t+++W+
  CDO69041.1 666 GKVQRTLFGHiEGVWAV--ASDRLRLVSGSHDRTIKVWS 702
                 57899*99**9999999..55666699**99*******5 PP

  == domain 7  score: 27.1 bits;  conditional E-value: 1.5e-09
                 TEEEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 
                 g+c+ tl GH + vt+l      a+    ++sGsdDg vr+W+
  CDO69041.1 706 GNCTATLVGHrGAVTCL------ALgedkIVSGSDDGDVRVWS 742
                 69********999****......77777788***********5 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.2   3.2e-15   1.1e-11       3      46 ..     181     223 ..     179     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.2e-15
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                  LP E+ l+++ yL++++L+r+a+V+r W+++a d+  LWr ++
  CDO69041.1 181 ILPREVSLKVLGYLDATSLCRAAQVSRVWKSLADDD-ILWRGIC 223
                 59*******************************999.****998 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   3.3e-13   1.2e-09       2      47 ..     178     223 ..     177     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.3e-13
                 HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksi 47 
                 ++  LP ev +++L +L+ ++l+++++VS+ w++l d+d lw+ ++
  CDO69041.1 178 PFAILPREVSLKVLGYLDATSLCRAAQVSRVWKSLADDDILWRGIC 223
                 7899**************************************9887 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   1.2   5.5e-05       0.2     228     254 ..     417     446 ..     375     453 .. 0.67
   2 !   11.0   0.1   3.3e-05      0.12     225     259 ..     457     492 ..     451     529 .. 0.74
   3 ?   -0.3   0.0     0.089   3.2e+02     238     255 ..     654     671 ..     652     675 .. 0.87
   4 ?    0.6   0.1     0.047   1.7e+02     237     255 ..     693     711 ..     678     744 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.5e-05
                 ....TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 228 i...gqtylfalsrdgkLrvWnlltgkcla 254
                 +   ++  l + s d+++rvWn +tg+cl 
  CDO69041.1 417 AlqfDEVKLITGSMDHTMRVWNWRTGQCLK 446
                 2566777788999***************97 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.3e-05
                 ....TTTEEEEEETT-EEEEEETTTTEEEEE.EE-- CS
      Nup160 225 vveigqtylfalsrdgkLrvWnlltgkclat.idll 259
                 + + ++++l++ s+d++++vWn +tg c    + ++
  CDO69041.1 457 CLNFDSNVLASGSVDRTVKVWNFRTGECFTLrGHCD 492
                 444599*********************987655555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.089
                 TT-EEEEEETTTTEEEEE CS
      Nup160 238 rdgkLrvWnlltgkclat 255
                 +d+++++W++++gk+ +t
  CDO69041.1 654 LDNTIKIWDIASGKVQRT 671
                 7**********9998665 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.047
                 ETT-EEEEEETTTTEEEEE CS
      Nup160 237 srdgkLrvWnlltgkclat 255
                 s d++++vW+ + g c+at
  CDO69041.1 693 SHDRTIKVWSREEGNCTAT 711
                 6788888888888888876 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     1e-06    0.0037       4      52 ..     178     226 ..     175     237 .. 0.88
   2 ?   -2.5   0.1       1.2   4.5e+03      45      75 ..     452     480 ..     435     486 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
     F-box_4   4 sLssLPlevlqhiaslLDsfsLsqLslvskllrevcssllqergiVllk 52 
                  +  LP ev  +++++LD +sL++ ++vs+  + ++   +  rgi  ++
  CDO69041.1 178 PFAILPREVSLKVLGYLDATSLCRAAQVSRVWKSLADDDILWRGICEQH 226
                 6778********************************9999999998765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
     F-box_4  45 ergiVllkWekkkyskgksswkikkkvwefs 75 
                 + g+V l+++ +  ++g++    + kvw+f 
  CDO69041.1 452 TEGVVCLNFDSNVLASGSVDR--TVKVWNFR 480
                 467888888888877766553..44577775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4753.89
//
Query:       CDO69042.1  [L=412]
Description: hypothetical protein BN946_scf184834.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-64  215.3   0.0    1.1e-63  215.0   0.0    1.0  1  Pkinase         Protein kinase domain
    7.3e-25   87.7   0.0      1e-24   87.2   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0011   18.9   0.3      0.037   13.9   0.0    2.6  3  APH             Phosphotransferase enzyme family
     0.0037   16.6   0.0     0.0086   15.4   0.0    1.6  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.037   13.6   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
       0.12   12.0   0.0       0.21   11.2   0.0    1.5  1  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.0   0.0   3.8e-67   1.1e-63       1     264 []      38     343 ..      38     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 215.0 bits;  conditional E-value: 3.8e-67
                 EEEEEEEEEESSEEEEEEEETTTT...EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEE..EEEE--TTEB..HHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketg...kivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee....kdely..lvleyvegge..ladl 88 
                 y++ + +G+GsfG V++a+  e++     +A+Kk+ ++k+ k       rE++i++ ++hpn+v l+ +f++    kde+y  lvleyv+++     + 
  CDO69042.1  38 YTNCKVIGNGSFGIVFQAKLLENDvptTDIAIKKVLQDKRFK------NRELQIMRLVSHPNVVDLKAFFYSngdkKDEVYlnLVLEYVPETVyrASR- 129
                 677899************987775222678999999988887......469********************9999955555459******88643223. PP

                 HH...HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHH CS
     Pkinase  89 le...rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWs 182
                  +    k+ +++ ++k +++q+l++l y+Hs gi+HrD+Kp+N+L++  +g+lK++DFG ak l  +++  s++++++Y+APE++ ++++y++++D+Ws
  CDO69042.1 130 -HyakLKQPMPMLQIKLYMYQLLRSLMYIHSIGICHRDIKPQNLLLNpATGVLKLCDFGSAKILVPGEPNVSYICSRYYRAPELIfGATNYTTNIDIWS 227
                 .233355669999**********************************99************************************************** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS......................................-HHHHHH CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilg...etkeklpeasei......................................seeakdl 240
                  G++++el+ g+p+f+   g++     +dql++i+k+lg    ++ k+ +++ +                                       +ea+dl
  CDO69042.1 228 TGCVMAELMLGQPLFP---GES----GIDQLVEIIKVLGtpsREQIKTMNPNYMehkfpqikphpfskvrvplvpffktsaqnlpqvfrprtAPEAIDL 319
                 ****************...544....899*********97553334444444448899999************************************** PP

                 HHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 241 lkkllkkdpkkRltaeellqhpyl 264
                 ++kll+++p+ Rl+a e++ hp++
  CDO69042.1 320 VSKLLEYTPEARLSAVEAMCHPFF 343
                 ***********************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   3.4e-28     1e-24       4     207 ..      41     243 ..      38     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 3.4e-28
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE....SSSS....EEEEEE--TTEBHHH..H CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct....keep....llivteyvkgGdLlk..f 91 
                   k +G+G+fG V++++l  e++  ++++a+K++ ++++ +      +e++im+ ++hpn+v l ++ +    k  +    l +v+eyv++   +   +
   CDO69042.1  41 CKVIGNGSFGIVFQAKLL-ENDVPTTDIAIKKVLQDKRFK-----NRELQIMRLVSHPNVVDLKAFFYsngdK--KdevyLNLVLEYVPETVYRAsrH 130
                  589***************.9999*********96666655.....57*******************9965542..14566889******996554103 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksD 187
                    k  k+++ + ++  +++q+ + + y++s  + Hrd+  +N Ll+  + v k++DfG a+ +      + + +  ++  + apE ++  + +t++ D
   CDO69042.1 131 YAK-LKQPMPMLQIKLYMYQLLRSLMYIHSIGICHRDIKPQNLLLNPaTGVLKLCDFGSAKILVPG---EPNVSYICSRYYRAPELIFGATnYTTNID 224
                  333.37999************************************973669*********999333...3444556667788*****98766****** PP

                  HHHHHHHHHHHHTTSSGTTT CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespyp 207
                  +Ws G ++ E++  g+  +p
   CDO69042.1 225 IWSTGCVMAELML-GQPLFP 243
                  ***********97.766555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.41   1.2e+03      38      85 ..      80     137 ..      70     161 .. 0.66
   2 !   13.9   0.0   1.2e-05     0.037     166     196 ..     160     189 ..     125     194 .. 0.81
   3 ?    2.0   0.1     0.055   1.6e+02      54     146 ..     304     394 ..     291     412 .] 0.75

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.41
                 HHHHHHHHHHHHTT-B--B-CTTB.S-EEETTEEEEEEE----EE-SS.........H CS
         APH  38 rrevallrlLakagvpvPevlagd.tddeeigllfalieyvpgrsllr.........k 85 
                  re++++rl++  +v   +++ +   d  ++ +l +++eyvp ++++          +
  CDO69042.1  80 NRELQIMRLVSHPNVVDLKAFFYSnGDKKDEVYLNLVLEYVPETVYRAsrhyaklkqP 137
                 5677777777766675555555553555666669999999999999886554444444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.2e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +++H+D++p+Nll++p+ g +  + Df+ a
  CDO69042.1 160 IGICHRDIKPQNLLLNPATGVL-KLCDFGSA 189
                 689*************887777.56677665 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.055
                 --B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHH CS
         APH  54 vPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesata.rllaselldlle 146
                  P+v+  +t  e i l++ l+ey p + l+    +a    ++++l +  a++ +  +++ pl+df++  l + ++l+++   ++  +el  +++
  CDO69042.1 304 LPQVFRPRTAPEAIDLVSKLLEYTPEARLSA--VEAMCHPFFDELKQEGAKMPNG-KEFPPLFDFTREELSVRPDLNRQLVpPHCEPELASRQI 394
                 5889999999999999999999999999999..5566666777777777788888.88999999999999999999999555555555554444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.6   4.8e+03      13      33 ..      37      57 ..      32      84 .. 0.76
   2 !   15.4   0.0   2.9e-06    0.0086     149     239 ..     147     231 ..     118     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
  Kinase-like 13 tlvrgellkkgdrsvvfevkd 33
                 ++   +++++g +++vf++k 
   CDO69042.1 37 KYTNCKVIGNGSFGIVFQAKL 57
                 566678899999999999874 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.9e-06
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekgg.lmlggfta..Lvragtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                  +  ql+r   ++++ g+ h +++++nlll++  g l+l +f++  +   g+  v s ++ + +  pEl+           t++t ++d W  G v
   CDO69042.1 147 M-YQLLRSLMYIHSIGICHRDIKPQNLLLNPATGvLKLCDFGSakILVPGEPNV-SYICsRYYRAPELIFG--------ATNYTTNIDIWSTGCV 231
                  4.68999999********************9755269***98633455677666.7887688999999866........4788889999999877 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.037     141     171 ..     156     186 ..     102     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                     HGG-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklvlIDF 171
                       +++  cH D+ ++N+lln  ++ l l DF
      CDO69042.1 156 YIHSIGICHRDIKPQNLLLNPATGVLKLCDF 186
                     335699************************9 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     7e-05      0.21     177     214 ..     146     189 ..      70     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7e-05
        FTA2 177 qlpkllrdlkklhklgIvvrDlkeenyidg......kLvDlsaa 214
                 ++ +llr l  +h+ gI +rD+k++n++ +      kL+D+++a
  CDO69042.1 146 YMYQLLRSLMYIHSIGICHRDIKPQNLLLNpatgvlKLCDFGSA 189
                 6789**********************985434445578888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2841.73
//
Query:       CDO69043.1  [L=740]
Description: hypothetical protein BN946_scf184834.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-79  266.6   0.0    4.1e-79  266.1   0.0    1.3  1  COG4        COG4 transport protein
  ------ inclusion threshold ------
      0.016   14.1   0.0      0.035   13.0   0.0    1.5  1  RINT1_TIP1  RINT-1 / TIP-1 family
        1.1    9.6   3.1        1.7    9.0   0.2    2.9  3  DUF948      Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.0   6.9e-83   4.1e-79       1     335 []     177     488 ..     177     488 .. 0.91

  Alignments for each domain:
  == domain 1  score: 266.1 bits;  conditional E-value: 6.9e-83
        COG4   1 LekaresLlelfleeFekAakenDkaeitrffkLFpligreeeGLdlYskyvceivaerarkelkseqskkdaetkagvfyanlltkLfeaiaqiveqh 99 
                 L+ are+Ll +f++eFe+A++++D ++ +rffkLFp ig+e+eGL++Y+++v+e+v+ r +++ k++         ++++y+++lt+Lfe+ia iv+qh
  CDO69043.1 177 LQAAREHLLAVFRREFERASRARDATATSRFFKLFPAIGWEAEGLQAYASFVVELVKVRPPASAKTS---------SPLYYITALTALFESIALIVDQH 266
                 789***************************************************************9.........9********************** PP

        COG4 100 qplvekyYgegkmlkvierLqkecDrqagiildtfeeerqldrllsdvksykfsflvrgqfpaksseaaaasaktsnesseeeegvdpreidalleEis 198
                 qp+vekyYg+gkm  v++rL +e+Dr++  ++d +eeer ++r+lsdv+s++                   ++  +  ++ e++ vdpreid++++E++
  CDO69043.1 267 QPVVEKYYGAGKMGLVLQRLLQEADRVVRDLVDGWEEERAMKRKLSDVSSASV------------------QRAGAVAEAVEDDLVDPREIDKVVTEVA 347
                 *****************************************************..................2233567888999*************** PP

        COG4 199 lmlsrwelYsrFlaskleeeeeeeeeeeqeeelelpdllrssk..lskkvsqellssYvpLetfylrrsvek....AiqldelpslkassplissvvDD 291
                  m++rw l+++F+ ++l+ee  +e++e+ ++ ++  ++ r+++   + +  +     ++++e++   + +e+    A+++ + +   +++p++++++DD
  CDO69043.1 348 GMSGRWGLFRKFMYDRLREEFADEHSEDGSADVQPAEVQRKTQhaAEGTADNAAPAGFQIIEESQSGKIIENtplhAHRMSTRDL--SQTPVTTTTPDD 444
                 *****************7777777777777777777777776643444446888899*******999999964444789999998..************ PP

        COG4 292 vfyilkkvlrralstgsvdvvsavvnavkrvlesdllgvlqrkl 335
                 vfyilk+vl+r+ls +s ++v+++ ++++ v+++d+++v+++kl
  CDO69043.1 445 VFYILKIVLSRMLSAASAAAVERTSEQLRDVMDRDYVRVIRQKL 488
                 ****************************************9986 PP

>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.9e-06     0.035     406     459 ..     655     723 ..     639     739 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-06
  RINT1_TIP1 406 weevllrnkFseaGaaQlarDvealfalvdryik....elklkkLkealkLlnlkve...........s 459
                 we+ ++  ++se Ga ++ +Dv+a++a++++ +     + k+ +L++  +Llnl++e            
  CDO69043.1 655 WEKFVVGLRYSELGAIRFDHDVRAVVAYLSSQTVfgdiREKFVRLQQIATLLNLDSEedvdefyngsgI 723
                 777788889******************7777776789999**************999555555544433 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00028       1.7      46      87 ..      77     118 ..      30     120 .. 0.79
   2 ?   -1.6   0.0      0.55   3.3e+03      49      49 ..     315     315 ..     278     351 .. 0.41
   3 ?   -1.6   0.1      0.57   3.4e+03      10      40 ..     446     477 ..     445     491 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00028
      DUF948  46 lkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                 ++ ++ +++ + ++++ v ++++++d+ +  v+d++e vs++
  CDO69043.1  77 TRLLDSTVSATARTAQHVGGRVQALDEEMRRVRDASERVSQI 118
                 33345677777889999999*******************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.55
      DUF948  49 v 49 
                 +
  CDO69043.1 315 S 315
                 1 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.57
      DUF948  10 FvvLviflivvllkl.kktldeaaatieelek 40 
                 F +L i+l ++l  + +  +++++++++++++
  CDO69043.1 446 FYILKIVLSRMLSAAsAAAVERTSEQLRDVMD 477
                 66677777777776645566777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 4479.60
//
Query:       CDO69044.1  [L=282]
Description: hypothetical protein BN946_scf184834.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-34  117.9  17.5    1.6e-33  115.7  15.1    2.6  2  Snf7        Snf7
  ------ inclusion threshold ------
        0.2   12.3   6.9       0.54   10.9   0.8    2.9  3  KfrA_N      Plasmid replication region DNA-binding N-term
       0.66   10.5   4.5         18    5.8   0.1    2.8  3  DUF4208     Domain of unknown function (DUF4208)
        1.1    9.6  13.1        4.4    7.7   4.3    2.3  2  YlqD        YlqD protein
        1.3    9.1   9.4        5.5    7.1   3.1    3.0  2  Resolvase   Resolvase, N terminal domain
          6    7.0  12.9        6.1    6.9   0.1    2.6  3  TPR_MLP1_2  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7  15.1   5.3e-37   1.6e-33       2     171 ..      21     227 ..      20     228 .. 0.92
   2 ?    0.2   0.0      0.16   4.8e+02     135     149 ..     265     279 ..     259     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 5.3e-37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-.........................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   2 airsLrkaerkldkkqeslekkikkleaelkklakkgn.........................kdralllLKqkkryekqldqldnqlanleqvslaie 75 
                  +r+L ka+r+ld+++ +le+++kkl  ++kk ak g+                         + ++++++K+++r++++++++++++ +l++v l i+
  CDO69044.1  21 HQRALAKAQRELDRERTKLEQQEKKLIMDIKKSAKAGQmvrpdpprrpliplpparsrcapyvQNACKVMAKDLVRTRRYVQKFYQMRTQLQAVGLRIQ 119
                 5799*********************************************************************************************** PP

                 HHHHHHHHHHHHHHHH............HHHHHHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-....GGTTHHHHHHHHHHHHHHHHHCSH CS
        Snf7  76 nlksnkevlnamkqga............kamkamnkkvdidkidklmdeiedqmekaeeisEalsrsldda....deedEeeleaeLdaLeqelgdeel 158
                 +l sn+++++am++++            +am amn+ +++++i+++m e+e++++ +++ +E++s+++dd+     e +Eee +++L ++++e+g +  
  CDO69044.1 120 TLRSNQQMAEAMRGATrvweppltphdrQAMGAMNRGLNLPQIQRIMNEFERESATMDMKEEMMSDAVDDVmddeLEDEEEEGDKILKQVLDEIGVDL- 217
                 ***************944444444444459*****************************************964334456678899999999999999. PP

                 .HHHHHHHTXXXS CS
        Snf7 159 ldesvklpevPse 171
                    s++l+++Ps+
  CDO69044.1 218 ---SQQLSDAPSG 227
                 ...9*******96 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
                 GGTTHHHHHHHHHHH CS
        Snf7 135 deedEeeleaeLdaL 149
                 d  dE+ l+a LdaL
  CDO69044.1 265 DMSDEDALQARLDAL 279
                 6689**********9 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   0.00018      0.54      79     111 ..      15      46 ..       1      50 [. 0.74
   2 ?   -1.9   0.1       1.7   5.2e+03      95      95 ..     116     116 ..      76     136 .. 0.54
   3 ?    4.1   0.0     0.023        70      35      85 ..     161     208 ..     155     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
      KfrA_N  79 aeeelaaaraelqaaraaleaeraeaearveel 111
                 ae +l++++++l++a+++l++er+++e++ ++l
  CDO69044.1  15 AE-RLRQHQRALAKAQRELDRERTKLEQQEKKL 46 
                 44.588888888888888888888888887765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
      KfrA_N  95 a 95 
                  
  CDO69044.1 116 L 116
                 1 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.023
      KfrA_N  35 tisrvlkeweaelaaalaaraapelPealaeallaalwqaaleeaeeelaa 85 
                  i+r ++e+e+e a+ + +++   +++a+ +++  +  +   ee ++ l++
  CDO69044.1 161 QIQRIMNEFERESATMDMKEE--MMSDAVDDVM-DDELEDEEEEGDKILKQ 208
                 6999********999999997..8999999999.55555555555554444 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.6       2.3   6.8e+03      26      36 ..      33      41 ..      15      55 .. 0.44
   2 ?    5.7   0.0    0.0068        20      38      74 ..     102     138 ..      84     139 .. 0.81
   3 ?    5.8   0.1    0.0061        18      26      61 ..     188     224 ..     163     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.3
     DUF4208 26 kkltkekllsk 36
                ++  ++  l++
  CDO69044.1 33 DRERTK--LEQ 41
                222222..222 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0068
     DUF4208  38 erakilkkeLlkiGdfIdellkekkeekkeklkkhlW 74 
                 ++  +++++L+++G +I++l  +++ ++  +  +++W
  CDO69044.1 102 QKFYQMRTQLQAVGLRIQTLRSNQQMAEAMRGATRVW 138
                 566789*************999987677666667777 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0061
     DUF4208  26 kkltkekl.lskkerakilkkeLlkiGdfIdellkek 61 
                 ++  +++l  +++e  kilk+ L +iG  ++++l + 
  CDO69044.1 188 DDVMDDELeDEEEEGDKILKQVLDEIGVDLSQQLSDA 224
                 4444455557889999************999999876 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.3    0.0015       4.4      13      55 ..      12      55 ..       9      62 .. 0.79
   2 ?    6.3   1.9    0.0041        12      24      96 ..     106     200 ..      87     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
        YlqD 13 vTeklK.eelqqqlqaqieqldkelqqLefqakrlikeikkqsa 55
                vT++ + ++ q+ l ++ ++ld+e  +Le+q+k+li +ikk  +
  CDO69044.1 12 VTPAERlRQHQRALAKAQRELDRERTKLEQQEKKLIMDIKKSAK 55
                6665552456788999999********************98543 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0041
        YlqD  24 qlqaqieqldkelqqLefqakrlikeikkqsaq.............................qieeiqeqvekekserlekkkqllqqleqvqkLelgs 93 
                 q+++q++++   +q L+ +++ +++                                     qi++i +++e+e + +  k + + + +++v   el+ 
  CDO69044.1 106 QMRTQLQAVGLRIQTLRSNQQMAEA-------MrgatrvweppltphdrqamgamnrglnlpQIQRIMNEFERESATMDMKEEMMSDAVDDVMDDELED 197
                 4445555555555555555444433.......233444568899999999999999999999**************************99998766666 PP

        YlqD  94 evk 96 
                 e +
  CDO69044.1 198 EEE 200
                 654 PP

>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.021        62     114     141 ..      18      45 ..       5      47 .. 0.83
   2 ?    7.1   3.1    0.0018       5.5      67     135 ..      88     180 ..      74     189 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHHCT-TTHHHHHH CS
   Resolvase 114 llqilaalaeferelirertkeglaaak 141
                 l+q   ala+++rel rertk   +++k
  CDO69044.1  18 LRQHQRALAKAQRELDRERTKLEQQEKK 45 
                 6777889*************98877776 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0018
                 EEEESSCCCC-S...S-HHHHHHHHHTT-EEEESS..SS-...................---HHHH.....HHHHHHHHHHHHHHHHHCT-TT CS
   Resolvase  67 vlvvekldRLaRsvrdlltlleelrekgvslvsldegidt...................stpmgrl.....llqilaalaeferelirertke 135
                  ++ ++l R  R v+++ ++ ++l++ g+++++l++++++                   +++mg +     l qi  +++efere   + +ke
  CDO69044.1  88 KVMAKDLVRTRRYVQKFYQMRTQLQAVGLRIQTLRSNQQMaeamrgatrvweppltphdRQAMGAMnrglnLPQIQRIMNEFERESATMDMKE 180
                 688999*****************************8644422233333333344333333334444555556666666666666666666665 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.0    0.0021       6.3      71     108 ..      16      53 ..      12      58 .. 0.86
   2 ?    6.9   0.1    0.0021       6.1      45      85 ..      90     130 ..      80     139 .. 0.84
   3 ?   -2.5   0.3       1.7   5.1e+03      89     103 ..     171     185 ..     161     208 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
  TPR_MLP1_2  71 aeiaelkaeaesakaeleeseesweeqkeelekelsel 108
                 +++++ + ++ +a+ el++++ ++e+q+++l  +++++
  CDO69044.1  16 ERLRQHQRALAKAQRELDRERTKLEQQEKKLIMDIKKS 53 
                 57889999999999999999999999999999888876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0021
  TPR_MLP1_2  45 Yerelvkhaedvkelqalreelnelkaeiaelkaeaesaka 85 
                  ++ lv     v++  ++r++l+ +  +i++l+++ + a+a
  CDO69044.1  90 MAKDLVRTRRYVQKFYQMRTQLQAVGLRIQTLRSNQQMAEA 130
                 56788999999***********************9998886 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
  TPR_MLP1_2  89 eseesweeqkeelek 103
                 ++ + ++ ++e++ +
  CDO69044.1 171 RESATMDMKEEMMSD 185
                 333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1494  (0.0833287); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 1894.55
//
Query:       CDO69045.1  [L=276]
Description: hypothetical protein BN946_scf184834.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-17   61.2  16.3    1.7e-09   37.7   2.6    2.7  2  zf-AN1        AN1-like Zinc finger
  ------ inclusion threshold ------
      0.015   15.5   3.1      0.015   15.5   3.1    2.3  2  IBR           IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   2.6   1.8e-13   1.7e-09       1      36 [.      18      52 ..      18      56 .. 0.96
   2 !   28.4   5.9   1.5e-10   1.3e-06       1      36 [.      71     119 ..      71     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.8e-13
      zf-AN1  1 CsfksCkkkdflpfkCryCgkvFClkHrlpedHdCk 36
                C+ +sC+ +dflp++C  Cg  FC +H  p++HdC+
  CDO69045.1 18 CALSSCNINDFLPIRCG-CGTLFCRDHVAPDAHDCP 52
                9****************.*****************8 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 1.5e-10
      zf-AN1   1 CsfksCkkkd.............flpfkCryCgkvFClkHrlpedHdCk 36 
                 C+++sC+k                +p +C+ C++ FC++Hr p++H+C 
  CDO69045.1  71 CAYSSCNKPSleayladpqdavdRTPARCSGCHQAFCAEHREPKAHSCV 119
                 88888888777777777777776899**********************5 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.5    0.0095        85      38      55 ..      20      46 ..       2      51 .. 0.68
   2 ?   15.5   3.1   1.7e-06     0.015      14      56 ..      64     114 ..      55     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0095
         IBR 38 s..........vtCskCgfefCfnCkke 55
                           ++C  Cg+ fC ++ ++
  CDO69045.1 20 LsscnindflpIRCG-CGTLFCRDHVAP 46
                1445556666689**.******988655 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.7e-06
         IBR  14 sdpnlkwCprpdCeaii........ekseg...cksvtCskCgfefCfnCkkew 56 
                 s+++l+ C ++ C+++         +   +    + ++Cs C+++fC +++++ 
  CDO69045.1  64 SSSKLQRCAYSSCNKPSleayladpQ---DavdRTPARCSGCHQAFCAEHREPK 114
                 4567999******9988666664322...223344499************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1869.84
//
Query:       CDO69046.1  [L=1635]
Description: hypothetical protein BN946_scf184834.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.7e-259  861.2   0.6   9.5e-259  860.2   0.0    1.7  2  Myosin_head     Myosin head (motor domain)
    3.3e-27   94.8   1.2    3.3e-27   94.8   1.2    3.2  2  DIL             DIL domain
    1.5e-13   49.2  41.8     0.0011   18.6   0.9    7.5  7  IQ              IQ calmodulin-binding motif
     0.0013   18.6   0.2     0.0027   17.5   0.2    1.5  1  Myosin_N        Myosin N-terminal SH3-like domain
     0.0071   16.4  11.2     0.0071   16.4  11.2    2.8  2  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
     0.0077   16.5   1.2      0.029   14.6   0.0    2.7  2  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.016   15.4   3.2        5.8    7.2   0.0    4.0  3  BET             Bromodomain extra-terminal - transcription re
      0.094   13.1   0.0      0.094   13.1   0.0    3.5  2  AAA_16          AAA ATPase domain
       0.11   12.0  25.7       0.22   10.9  25.7    1.4  1  Golgin_A5       Golgin subfamily A member 5
       0.88    9.8  12.9        4.4    7.5  12.2    2.6  1  Fib_alpha       Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  860.2   0.0  5.3e-262  9.5e-259       2     677 .]      85     810 ..      84     810 .. 0.96
   2 ?   -5.0   3.5       3.5   6.2e+03     500     576 ..    1049    1127 ..     980    1130 .. 0.71

  Alignments for each domain:
  == domain 1  score: 860.2 bits;  conditional E-value: 5.3e-262
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                  +dl++Ls+lne+svl+ +++Ry+++ iYtysg+vl+avnP++++ +y  +vi+ay+g++r el+PH+faia++ay ++ +d   q+i++sGEsGAGKt
   CDO69046.1  85 DDLATLSHLNEPSVLHTIRNRYAQHSIYTYSGIVLIAVNPFQRVALYGPEVIQAYNGRRRGELEPHLFAIAEDAYTAMSRDGTGQTIIVSGESGAGKT 182
                  8************************************************************************************************* PP

                  HHHHHHHHHHHHHSSSSSC.........TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT- CS
  Myosin_head 100 eatKkvlqylasvaeskek.........veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeE 188
                  e++K +++ylasv+  ++k          e++e+e++il++nP+lEafGnAkt+rndnssRFGK+i+i fd + +i+ga+i+tYLLE+sRvv+q  +E
   CDO69046.1 183 ESAKFIMRYLASVNPPNAKtrartkaslDESSEVERQILATNPVLEAFGNAKTTRNDNSSRFGKYIQILFDGDQEIVGARIRTYLLERSRVVFQPLTE 280
                  **************99888899***9998999****************************************************************** PP

                  -SBHHHHHHHHCSTHHHHHHTT--.TCCGSTTTTTTS..SSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEE CS
  Myosin_head 189 RnyHiFYqllagaseeekkelkle.dvkdyaylsqsg..eltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavl 283
                  RnyHiFYql+aga+ +e+k+l l+ dv++++ylsq+g  ++ ++g+dd+eef++t+ al+++g+s e+q  +f++++a+lhlGni+++  ++d+ a+ 
   CDO69046.1 281 RNYHIFYQLCAGAPLKERKDLGLDtDVTKFQYLSQGGpsSTPIPGVDDAEEFRQTQTALSTIGISVEKQWAVFKLLSALLHLGNIKITAMRNDS-AID 377
                  ************************9**********9866889***********************************************99985.999 PP

                  SSHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS....-S-SEEEEEEEEE-B--- CS
  Myosin_head 284 edeeklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk....eekksfiGvLDiaGFEif 377
                  +++ +l+  ++ lgv  +e++k+ +k++i+t++e+++++ln+ qa+v rd++ak++y+ lF+wlv  +n+sl  ++    ++ + fiGvLDi+GFE+f
   CDO69046.1 378 DSDPALQLSTRFLGVPLAEFKKWTIKKQITTRSEKIVTSLNSAQATVVRDSVAKFVYACLFEWLVAIVNESLAGENgeaaSRAEMFIGVLDIYGFEHF 475
                  99999*******************************************************************9877555567789************* PP

                  SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTST...TE CS
  Myosin_head 378 eknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskha...kf 472
                  +knsFEq+ iny+nEkLqq Fn++v+klEqeeYvrE+i+w+fi+f  dnq++id+ie k lG+++lLdee++lp++td++fl+kl+++ +k +    f
   CDO69046.1 476 KKNSFEQFSINYANEKLQQEFNQHVFKLEQEEYVREKINWTFIEF-SDNQPCIDIIEGK-LGVMALLDEESRLPSGTDQSFLQKLNNQLAKPEnakVF 571
                  *********************************************.7***********6.****************************9655433489 PP

                  EETTSTTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCH..................................B-- CS
  Myosin_head 473 eksrlkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeek..................................eak 536
                  +k+r   g+++F+i HyA +v+YevegfleKn+Dt+ +++++ll+++k+ +l+e+++ +                                    ++ 
   CDO69046.1 572 KKPR--FGNSAFTIAHYALDVTYEVEGFLEKNRDTVPDEHMALLQNTKNAFLKEVLDAAFAatkppeaaapssptvsdsasggnrrasvipdpgrQSL 667
                  8888..6*************************************************997668899**************************9998666 PP

                  .........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHG CS
  Myosin_head 537 aeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYk 634
                   +++ +++  k+    +k+ t +s fk sl +Lm+tl+ tn+h++RCikpne+k+a+++  ++vl qlr++Gvle+iri++aG+p+R+t+eef +rY+
   CDO69046.1 668 ISSAVNGSGPKRPGAVAKKPTQASIFKASLVNLMDTLNVTNVHYIRCIKPNEQKRAWEFTPQQVLGQLRACGVLETIRISCAGYPSRWTYEEFAERYY 765
                  777788888888899999******************************************************************************** PP

                  GGSTTSS-SS...SSSHHHHHHHHHHHTTS-GCGEEECSSEEEET CS
  Myosin_head 635 llakkelkkl..lkedakkaveailkeleldkeeykiGktKiFfr 677
                  +l++++ +++   + + k+ +  il+++  d ++y+ G tKiFfr
   CDO69046.1 766 MLVHSSEWEPmiKNLELKTLCARILEKTINDPDKYQPGLTKIFFR 810
                  **9999888866677899**************************8 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 3.5
                   HHHHHH----HHHHHHHHTSSSHH..HHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTS CS
  Myosin_head  500 fleKnkDtlnedlvellksskkkl..laelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlest 576 
                    l K k+ +++ l+e+l ++ +k   +++l +e   +a++ +++++  +++  +++  ++v ++ k+++++L ++l+++
   CDO69046.1 1049 ALLKAKEDVEKRLEEALAKAAEKElaIVKLQEELAAQAAQLESQQKMIDSTPVRNADDSSVIQTLKSEVSSLREQLNRA 1127
                   4667788888888888777666440244555554444444444555555666677778888899999999999988865 PP

>> DIL  DIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.7       0.8   1.4e+03      62      97 ..     987    1021 ..     953    1041 .. 0.64
   2 !   94.8   1.2   1.9e-30   3.3e-27       1     102 [.    1464    1563 ..    1464    1565 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.8
                  HHHHHHHC-S--HHHHHHHC.TT-TSS-HHHHHHHH CS
         DIL   62 qaaqllqlpkssledlesilrstcpaLnsaQlkrll 97  
                  ++++l q+ ++  e++++++ s  +aL ++ l+++ 
  CDO69046.1  987 KVVELTQTLQKRTEEKKELQ-SKVSALEAQLLQAVS 1021
                  34444444444444455555.777777765555444 PP

  == domain 2  score: 94.8 bits;  conditional E-value: 1.9e-30
                  HHHHHHHHHHHHHHHHHHHHHS-SB-HHHHHHHHHHHHHHHHCCTS-.....-GGGGHHHHHHHHHHHC-S--HHHHHHHC.TT-TSS-HHHHHHHH CS
         DIL    1 QlfsqlfyfinaelfNrlllrkklcsrskGlqlrrnlslledWaeeqgleeaaekhlapliqaaqllqlpkssledlesilrstcpaLnsaQlkrll 97  
                  Q++++l+++i++++fN+ll+r+++ s+++++q+++n++++e+W++++++  + + +l++l+qa++llql+ks+  dle i  ++c+ L+++Q++r++
  CDO69046.1 1464 QVITELLKLIGVTAFNDLLMRRNFSSWKRAMQIQYNITRIEEWCKSHDMP-EGTLQLEHLMQATKLLQLKKSTPADLEIIY-DVCWMLTPTQIQRMC 1558
                  99**********************************************96.5699******************9***9999.*************** PP

                  TTB-- CS
         DIL   98 enYrp 102 
                  +nY  
  CDO69046.1 1559 TNYYV 1563
                  ***75 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.034        62       4      21 .]     829     846 ..     826     846 .. 0.92
   2 !   11.8   3.9   9.5e-05      0.17       1      18 [.     849     866 ..     849     866 .. 0.90
   3 !   18.6   0.9   5.9e-07    0.0011       3      20 ..     876     893 ..     874     894 .. 0.94
   4 !    9.1   1.0   0.00066       1.2       1      20 [.     897     916 ..     897     917 .. 0.92
   5 !   16.4   0.1   3.1e-06    0.0055       3      21 .]     924     942 ..     922     942 .. 0.94
   6 !   13.6   1.5   2.4e-05     0.043       4      21 .]     948     965 ..     945     965 .. 0.91
   7 ?   -3.1   0.0       5.9     1e+04       6      13 ..    1309    1316 ..    1308    1317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                 +++ Q+  R+ +a k+y+
  CDO69046.1 829 VTIVQKNMRRRMAVKKYR 846
                 799**************8 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 r+a ikIQ +wRG +a +
  CDO69046.1 849 RRATIKIQTWWRGIQAHR 866
                 79***********98875 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 5.9e-07
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 aai++Q+ +R++laRkr+
  CDO69046.1 876 AAIRLQRGVRRFLARKRF 893
                 9****************9 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00066
                 HHHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkry 20 
                 r++++  Q++ RG laR+ +
  CDO69046.1 897 RASIVAVQSRARGALARRLF 916
                 6799**************87 PP

  == domain 5  score: 16.4 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkryk 21 
                 a++++Q+ +RG l+R+ y+
  CDO69046.1 924 AVVTLQSLFRGVLCRRTYR 942
                 99***************97 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                 +i+IQ+++R+ laRk++k
  CDO69046.1 948 VILIQSCIRRRLARKELK 965
                 89*************986 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 5.9
                  HHHHHHHH CS
          IQ    6 kIQaawRG 13  
                  +IQ+++  
  CDO69046.1 1309 TIQSHVMS 1316
                  7****875 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.5e-06    0.0027       1      22 [.       9      30 ..       9      44 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
                SEEEEETTSTTS-EEEEEEEEE CS
    Myosin_N  1 KklVWVpDpkegyvkGeIkeee 22
                +++VW pD++ g++ +e+++ +
  CDO69046.1  9 GTRVWFPDKELGWISAEVTSVT 30
                589****************754 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4  16.9       0.6   1.1e+03      51     111 ..     987    1047 ..     956    1054 .. 0.79
   2 !   16.4  11.2     4e-06    0.0071       3      78 ..    1054    1129 ..    1052    1135 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.6
  TPR_MLP1_2   51 khaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekr 111 
                  k  e +++lq+  ee +el+++++ l+a++ +a +++ees +  ++ +  l+   +el +r
  CDO69046.1  987 KVVELTQTLQKRTEEKKELQSKVSALEAQLLQAVSKHEESDARVKQIQADLQIAQEELSRR 1047
                  4557889999999999999*******************************99999999988 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4e-06
  TPR_MLP1_2    3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelka 78  
                  ++ +e+ +++++++++e e ++ klqe+l +qa++++  q+   +  v +a+d+  +q+l++e+++l+++++ ++a
  CDO69046.1 1054 KEDVEKRLEEALAKAAEKELAIVKLQEELAAQAAQLESQQKMIDSTPVRNADDSSVIQTLKSEVSSLREQLNRATA 1129
                  788999*****************************************************************98876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.6e-05     0.029       4      83 ..     167     249 ..     163     261 .. 0.74
   2 ?   -3.1   0.6       4.8   8.7e+03      33      37 ..    1021    1025 ..     956    1097 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdl.lrellralglelkaerlsseelleale 83 
                 t + ++v GesG+GKT +++ +++ l  ++ ++   + ++ ++ + +s+ +++ l  + +l+a+g+ + +++++s+++ ++++
  CDO69046.1 167 TGQTIIVSGESGAGKTESAKFIMRYLASVNPPNAktRARTKASLDESSEVERQILaTNPVLEAFGNAKTTRNDNSSRFGKYIQ 249
                 67889*****************9999666544447444444477777777777776778888888888876666666666666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.8
      AAA_22   33 akaee 37  
                  +k+ee
  CDO69046.1 1021 SKHEE 1025
                  22222 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.12   2.2e+02      13      33 ..     816     836 ..     815     844 .. 0.88
   2 ?    3.3   0.4      0.05        90       4      25 ..     999    1020 ..     998    1022 .. 0.91
   3 ?    7.2   0.0    0.0032       5.8       4      28 ..    1235    1259 ..    1234    1275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
         BET  13 eInkLpgeklgrvveIIqere 33 
                 ++++L +++l+  v I+q+++
  CDO69046.1 816 ALESLRSNRLNALVTIVQKNM 836
                 6899***************99 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.05
         BET    4 yeeKkeLseeInkLpgeklgrv 25  
                  +eeKkeL+ +++ L+++ l+ v
  CDO69046.1  999 TEEKKELQSKVSALEAQLLQAV 1020
                  69*************9999877 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0032
         BET    4 yeeKkeLseeInkLpgeklgrvveI 28  
                  +eeK  L+++I++L+++ l++ ++ 
  CDO69046.1 1235 AEEKIRLMQDIKRLDEDVLDGLIRG 1259
                  69******************99975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.2e-05     0.094      18      49 ..     162     193 ..     150     262 .. 0.77
   2 ?   -9.9  13.5        10   1.8e+04      80     135 ..    1015    1073 ..     799    1132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellrale 49 
                 + r+g+++ +++sGesG GK+  ++ ++r+l 
  CDO69046.1 162 MSRDGTGQTIIVSGESGAGKTESAKFIMRYLA 193
                 5677777***************9999997554 PP

  == domain 2  score: -9.9 bits;  conditional E-value: 10
      AAA_16   80 ellrqlldeaesaeleawrekleeala.avpelagaea.....srllellkrllallsrder 135 
                  +ll+++  ++   e +a  +++++ l+ a+ el++ ea     +++   l ++la+++++e 
  CDO69046.1 1015 QLLQAVSKHE---ESDARVKQIQADLQiAQEELSRREAllkakEDVEKRLEEALAKAAEKEL 1073
                  3333333331...1122222222222233333344433444444444444444444444333 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  25.7   0.00012      0.22      46     204 ..     961    1128 ..     950    1142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
   Golgin_A5   46 saeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsri. 141 
                   +el +lk+e   + ++ ++ ++++e+   el ++ +++++e ++l+ +++ le ql +  +++ee +a +++++ +l++++eel+r  a l+++  
  CDO69046.1  961 RKELKALKAEARSV-SKFKEISYRLENKVVELTQTLQKRTEEKKELQSKVSALEAQLLQAVSKHEESDARVKQIQADLQIAQEELSRREALLKAKEd 1056
                  55666666665544.5688999999*******99999999**********************************************99887776631 PP

   Golgin_A5  142 ..kdrekeiek.lrnqlttkslsss...seselesRlkqLtesLiqK...QtvlEalsteknslvlQLeRle 204 
                    k+ e+ + k  +++l+  +l++    + ++les  k++  + ++      v+ +l++e +sl  QL+R+ 
  CDO69046.1 1057 veKRLEEALAKaAEKELAIVKLQEElaaQAAQLESQQKMIDSTPVRNaddSSVIQTLKSEVSSLREQLNRAT 1128
                  11344555555456677765444433558899*******99999986222589*****************85 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.2    0.0024       4.4      28     125 ..    1000    1096 ..     989    1099 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
                  CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha   28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124 
                  + +k+++ +++ le +l ++ ++++e++  vk+i+  l+ +q++ +   +++ k ++++e++ ++  ++  ++e  i +Lq+ l ++  +++  ++ 
  CDO69046.1 1000 EEKKELQSKVSALEAQLLQAVSKHEESDARVKQIQADLQIAQEELS-RREALLKAKEDVEKRLEEALAKAAEKELAIVKLQEELAAQAAQLESQQKM 1095
                  45788999************************************99.6899999******************************9999988776666 PP

                  H CS
   Fib_alpha  125 i 125 
                  i
  CDO69046.1 1096 I 1096
                  6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1983  (0.110603); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.54
# Mc/sec: 9137.76
//
Query:       CDO69047.1  [L=435]
Description: hypothetical protein BN946_scf184834.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-29  101.9   0.0    3.1e-15   56.3   0.0    2.1  2  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.4e-15   2.5e-11      21     135 ..       3     135 ..       2     173 .. 0.80
   2 !   56.3   0.0   1.7e-19   3.1e-15     161     291 ..     276     405 ..     232     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.4e-15
  Bestrophin  21 vyklilrelllflllyalvvllyrl.ee.....rlfellsicelipLsfvLgFr.vnavydRWweqrkllgwldkaarslarqvrgls........... 101
                 ++++i+ ++l+++++++  ++l  l  +     ++++lls+    +++++L+Fr v+++ydR+ e+rk +g++++++r+l+r ++              
  CDO69047.1   3 IVPRIIGPVLTVTIFAIGTAYLWDLgYDisltnSVVPLLSV----VVGLLLVFRqVTTSYDRYYEGRKDFGTMVSHIRNLTRLIWVNVstppvddtakg 97 
                 899****************9999965445223355666666....********989******************************5599999988877 PP

  Bestrophin 102 .....d.eegrlarrtilrylvlllvlffralssrvrkrf 135
                      + + ++l rr++   +++l + f++a+++ +r+++
  CDO69047.1  98 kspasNlTPTQLRRRKVD--AIKLCLCFAYAVKHYLRGED 135
                 665542455555555554..8999999**********996 PP

  == domain 2  score: 56.3 bits;  conditional E-value: 1.7e-19
  Bestrophin 161 vplqWavsllrrlaerlkelakegrikddq..alkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftll 257
                 +p++    ++++l++ l + +++g+++      ++++++ ++ + + ++ +er+++tpiP +Y ++++++v ly+++               lP f l+
  CDO69047.1 276 LPMV----IAHELSRTLFKFRRDGYLETVGpaGVNAMNQMVQGMIDMMTCMERVANTPIPRSYGIHLKQCVSLYLFM---------------LP-FVLI 354
                 4555....788888888889999999998888899******************************************...............99.8888 PP

  Bestrophin 258 q............faffffGllkvaeqlenPF.....GedddDlelnalid 291
                 +            +af+f+G++ +a+++e PF     G d+ Dl+l+  ++
  CDO69047.1 355 KelgwamipivtvIAFTFMGIEGIADEIEMPFenvgtGLDNADLPLERYCE 405
                 8888999999988889****************8888888999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2966.01
//
Query:       CDO69048.1  [L=256]
Description: hypothetical protein BN946_scf184834.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-58  194.3   0.0    1.1e-57  194.0   0.0    1.1  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0   6.1e-62   1.1e-57       2     144 ..      68     214 ..      67     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 6.1e-62
                      HHHHTTS-..-GGGGHHHHHHHHHHH.HSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHH CS
  2Fe-2S_thioredx   2 keiiakyp..ekrsaliplLklvQee.egwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekkl 92 
                      +eii++yp  +k++a+iplL+l Q++ +gw + +++++va+ll++pp++vyevatFY+mfn++p+g++ +qvCtttpC+lrg+ eil++++ +l
       CDO69048.1  68 QEIISHYPpqYKKAAVIPLLDLGQRQnKGWTSISVMNYVAKLLEMPPMRVYEVATFYTMFNREPIGEHFVQVCTTTPCMLRGAYEILDTVCGHL 161
                      89************************889***************************************************************** PP

                      T.--TT-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHH CS
  2Fe-2S_thioredx  93 g.ikagettadgkftleeveClGaCanaPvvqindevyedltpekveeilekl 144
                      g ik+gett+dgkft+ eveC GaC+naP+++++d++yedlt+e+++++l+++
       CDO69048.1 162 GgIKPGETTKDGKFTVIEVECQGACSNAPMMVVGDDFYEDLTAETTRKVLDAF 214
                      648***********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1770.58
//
Query:       CDO69049.1  [L=105]
Description: hypothetical protein BN946_scf184834.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   46.1   0.8    5.3e-12   45.7   0.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.8     3e-16   5.3e-12      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO69049.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 759.23
//
Query:       CDO69050.1  [L=693]
Description: hypothetical protein BN946_scf184834.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-09   38.0   0.1    1.2e-08   34.8   0.0    2.5  2  DDE_1        DDE superfamily endonuclease
    2.5e-09   37.0   0.2    2.4e-08   33.9   0.0    2.5  2  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
      0.025   14.6  13.8      0.036   14.1  13.8    1.2  1  TFIIA        Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.83     5e+03     137     162 ..       8      33 ..       5      34 .. 0.85
   2 !   34.8   0.0     2e-12   1.2e-08      17     175 .]     251     395 ..     237     395 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.83
       DDE_1 137 leeqnrlskeqkkltlldalkfikkA 162
                 l++q+r s+ +k+ ++l+al+ + ++
  CDO69050.1   8 LALQKRKSSDAKEAQILHALEAYHAS 33 
                 78899999999*********998765 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 2e-12
       DDE_1  17 kLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWLkvfdkrle....aekrkilLlldssrshetvel.leselqniklv.flPass 109
                   +p+vi+ +++  +              +  + ++ + +++  eW++ f+ +++    + ++   L +d+++sh t+ +    ++++i+++ ++P +s
  CDO69050.1 251 PFPPTVIFAGQNFLKR-------------IALSPTGYTNNQLTLEWMREFELKTQpsglHADEWRELAVDNHGSHLTLAFlDFAASHHIEVIgYIP-NS 335
                 5555555555554333.............345667888899*************999998889999**********99997788999***996788.9* PP

       DDE_1 110 asllqPldqgvvselKarYrrqllqalleeqnrlskeqkkltlldalkfikkAwn.avsketiksaf 175
                 +++lq ld+ ++ ++K++Y r+l ++   +++++ k         +lk ++k ++ a++++ti++af
  CDO69050.1 336 THVLQGLDVACFGAFKTHYSRALAEYRHVTNRSITK-------DTFLKLVEKPFKlAFTPSTIRAAF 395
                 ***********************9999999999888.......999999999999999999999988 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   3.9e-12   2.4e-08       1      61 [.      97     155 ..      97     160 .. 0.93
   2 ?   -0.2   0.1      0.17     1e+03      23      39 ..     528     546 ..     517     557 .. 0.66

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 3.9e-12
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhg 61 
                  +p++E +L++ ++ l+ r+ p+t++l+ +kA++l+  a   + +  ++ k W++rF++Rh+
   CDO69050.1  97 TPVEETVLVQLCKTLALRHLPLTHKLLEDKANALL--AVRAKASGRQVRKMWTYRFLSRHN 155
                  6899*****************************95..788999*****************5 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.17
                  SCHHHHHHHHHHH..HHSS CS
  HTH_Tnp_Tc5  23 tgelirekAqela..slaa 39 
                     +i e+Aq+l   ++++
   CDO69050.1 528 QAMTIEEQAQKLTskEERK 546
                  56689******97442223 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  13.8     6e-06     0.036      91     309 ..     405     670 ..     366     693 .] 0.46

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6e-06
       TFIIA  91 pslvipagksvqslta...nssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq.......sqgsaaqssvaalq 179
                 ps++ p++       a    +sa +a  ++lpa+++ ++ +   v+ +  ++ +   + +a++ +++++q  q+ +++       + +++++++ ++++
  CDO69050.1 405 PSAILPEQL------ApsqTNSAPSAFPLELPAAVKAVLPLLRAVQSHASNMDMERLKCAAKEMAELLKQVSQEHQSEtiaplllQPPPMIHTQSTQSD 497
                 444444441......112255557788889999999977777788888777766666667777777776666666332445566656666666666666 PP

       TFIIA 180 aqsqqaqalaepqqqlekqqqq.qqqqqqqqqqq.qvqqqqqe...esqqaqqasqe..........qvagsqvessqtdgaedaleeespv..legel 261
                  + q+a  ++e  +q++  q+  ++q+ + + q+ ++++q q+   +  +++++s++          +++g++  +         +++++++   e++ 
  CDO69050.1 498 TSCQAALRASEARNQAS--QRIiETQNCTITLQAmTIEEQAQKltsK--EERKQSKHdkllagkvgrHLSGEEFRA-------AVQADDEECtaAEAKC 585
                 55333333333333322..3333344444444444555555554321..222222223444433333222222222.......2222223332223333 PP

       TFIIA 262 saeeeagaqkeelsreeidrireealkakelekeskkkkr.aeessla..........................................d 309
                 ++ +   + + el++e+ + + +e+++++++++e++  ++ ++    +                                          +
  CDO69050.1 586 KQARDTRKAQAELRKEKREWR-KEEQQRRQTRREHE-LAEwRS----EcshsrearrkppkrppvprraltperfqmmvktqvedhgsglS 670
                 333222222223332222211.11111111111111.111122....12233345555555666666666666443333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1634  (0.0911373); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4741.31
//
Query:       CDO69051.1  [L=115]
Description: hypothetical protein BN946_scf184834.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 800.34
//
Query:       CDO69052.1  [L=170]
Description: hypothetical protein BN946_scf184992.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-46  157.9   0.1      4e-46  157.7   0.1    1.0  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
      0.038   13.1   0.0      0.047   12.8   0.0    1.1  1  Cas_Cas1  CRISPR associated protein Cas1


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.1   4.5e-50     4e-46       1     144 [.      16     170 .]      16     170 .] 0.91

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 4.5e-50
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaP........ereytde..kkgervysem 89 
                 F+n++++l+++Dslp  +++wk  e++v+g+++++++++mke++++w r+p+evi +llgnp+f++++++aP        +r+++++  +++er+++em
  CDO69052.1  16 FTNNRSFLQKVDSLPGPKASWKLIEITVTGNQKDADGQFMKERLDCWARNPVEVIGDLLGNPEFKNDITFAPyiqeleelQRQLENAtdAEKERIFEEM 114
                 99**********************************************************************888888886666655434569****** PP

     Plavaka  90 mtgdwaweqq..ieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipke 144
                  +++w+ ++q  ++  +  +at++pvil++DKT+ls+f+g+k+a+PvYl+iGni+k+
  CDO69052.1 115 ASAEWWRKIQeaLS-AQVPHATVAPVILATDKTQLSTFSGDKQAWPVYLTIGNINKD 170
                 **********6544.33339**********************************985 PP

>> Cas_Cas1  CRISPR associated protein Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-06     0.047     126     171 ..      83     128 ..      45     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-06
                 HHHHCHCHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHCS CS
    Cas_Cas1 126 eeleeaieeleelleklekaesleeLrgiEGeaakaYfeafdkllk 171
                   ++  i+eleel+++le+a++ e+ r +E  a++++++ +++ l+
  CDO69052.1  83 ITFAPYIQELEELQRQLENATDAEKERIFEEMASAEWWRKIQEALS 128
                 567889***********************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1234.95
//
Query:       CDO69053.1  [L=453]
Description: hypothetical protein BN946_scf184992.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2949.34
//
Query:       CDO69054.1  [L=230]
Description: hypothetical protein BN946_scf184992.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1721.45
//
Query:       CDO69055.1  [L=602]
Description: hypothetical protein BN946_scf184992.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-36  124.3   0.1    6.6e-36  123.5   0.1    1.3  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.5e-18   66.9   0.0    2.8e-18   66.0   0.0    1.4  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    1.1e-13   51.3   0.0    2.9e-13   49.9   0.0    1.8  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
        0.1   12.8   0.2       0.39   10.9   0.0    1.9  2  DUF362        Domain of unknown function (DUF362)


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.1   1.5e-39   6.6e-36       3     169 ..      38     211 ..      36     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.5e-39
                   HHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHH.TS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   3 vaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyarat.gkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   v+++lv++L +lgv+++fgvpG+ +l +ld ++++++i++v   +E +aa+aAdgyar+  gk+gvv +t g+G ++a++++a+A+++++P+l+++g
    CDO69055.1  38 VGQYLVERLVQLGVTKMFGVPGDFNLGFLDFVEDHPKIDWVGDCNELNAAYAADGYARINeGKIGVVTTTFGVGELSAMNGIAGAFSEHVPVLHVVG 134
                   89********************************************************999************************************ PP

                   E--CCCHH.S..TC--T......-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  99 drptslrg.qgvlqqel......dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                    ++t++++ +++l+++l         +  +++t ++  ++++++++ +++r ++++   +  Pvyl lp d+  + ++
    CDO69055.1 135 VPSTTQQKaKPMLHHTLgdgrydAYYKASQQFTIAQAVLNNKDTAAAEIDRVLTEC-VVKAHPVYLMLPTDIAYARIP 211
                   ********9666665555443633444467**************************.99999**********998876 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   6.3e-22   2.8e-18       2     117 ..     236     352 ..     235     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 6.3e-22
                   HHHHHHHHH-SSE.EEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   2 ekaaellkaakrp.vilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   +++++l+++ak+  +ilv+  ++r+g+++e++el e++g+Pv + +mgk +++e  ++y g ++g +++++ +e +e+a l+l +Ga  +d ++tg+
    CDO69055.1 236 DEIVKLVEEAKNEvIILVDACAIRHGVKKEVKELYERTGLPVYSAPMGKTAVSEAYERYGGiYVGSISHPEIKEKVESAKLILSIGALKSD-FNTGN 331
                   799********76267899999999******************************************************************.55666 PP

                   TTTTTTT-EEEEEESSCCCCT CS
  TPP_enzyme_M  97 epefapeakiihididpaeig 117
                   ++   p ++ i++++d++ i+
    CDO69055.1 332 FTYHIPTQRTIELHSDHTRIQ 352
                   774455569********9987 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   6.4e-17   2.9e-13      17     144 ..     435     565 ..     421     574 .. 0.74

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 6.4e-17
                   SSSEEEC.ETTTS-TTTHHHHHHHHHHH..STT.SEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS- CS
  TPP_enzyme_C  17 rprsylt.sgglgtmGyglpaAiGakla..kpd.revvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlk 109
                   +p+s++  + ++g++G++++a +Ga++a  +++  + + +vGDG+++ ++qel+ ++r +l+ +++vlnN+gy   +     +g+ rk++ +     
    CDO69055.1 435 PPDSIFVsQILWGSIGWTVGATLGAAFAglDRGlGRTILFVGDGSIQLTVQELSVMIRWGLKPIIFVLNNSGYTIERYL---HGMTRKYN-D---IS 524
                   566666635599***************644332369*************************************998886...44444433.2...55 PP

                   ---HHHHHHHTTSE.EE.....EESSH.HHHHHHHHHHHH..C CS
  TPP_enzyme_C 110 pvdfaklaealGak.ga.....rvekadveeleealkeal..e 144
                   + +  kl   lG + g      +v+++  +el + l++a   +
    CDO69055.1 525 NWKWTKLLDTLGGEeGKncksyTVRTK--QELSALLDDAAfaR 565
                   667777777777666666663365566..99999999886544 PP

>> DUF362  Domain of unknown function (DUF362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.59   2.6e+03      89     117 ..     160     196 ..      79     198 .. 0.67
   2 ?   10.9   0.0   8.8e-05      0.39      21     115 ..     233     325 ..     221     333 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.59
                 xxxxxxxxxxxxxx........xxxxxxxxxxxxxxx RF
      DUF362  89 khlkkelkiakavl........eaDviInlpklKgHa 117
                 ++ +++++ia+avl        e D ++  +++K H 
  CDO69055.1 160 YKASQQFTIAQAVLnnkdtaaaEIDRVLTECVVKAHP 196
                 2334457777775556666666888888888888885 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DUF362  21 evvravvellkeagagkiivgdspgl.yvsrgkahrevaeeagydelae..gadiadglegedevvvpvkgkhlkkelkiakavleaDviInlpklKg 115
                  v+ ++v+l++ea+++ ii++d++++ +   +k+ +e +e++g+   +   g + a  +  e++    v g ++++  +i ++v+ a  i+++  lK 
  CDO69055.1 233 FVLDEIVKLVEEAKNEVIILVDACAIrH-GVKKEVKELYERTGLPVYSApmG-KTAVSEAYERYGGIYV-G-SISH-PEIKEKVESAKLILSIGALKS 325
                 58899*******99999********844.345557899******98666432.4444444333333322.4.3444.788888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:01.26
# Mc/sec: 1446.80
//
Query:       CDO69056.1  [L=319]
Description: hypothetical protein BN946_scf184992.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2108.56
//
Query:       CDO69057.1  [L=233]
Description: hypothetical protein BN946_scf184992.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 1497.50
//
Query:       CDO69058.1  [L=222]
Description: hypothetical protein BN946_scf184992.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-34  116.6   0.2    9.4e-34  116.3   0.2    1.1  1  Ras        Ras family
    4.6e-25   88.2   0.2    8.5e-25   87.3   0.0    1.5  2  Roc        Ras of Complex, Roc, domain of DAPkinase
    4.3e-08   32.8   0.1    6.7e-08   32.2   0.1    1.4  1  Arf        ADP-ribosylation factor family
    2.4e-07   30.4   0.2      3e-07   30.0   0.2    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
      0.015   14.7   0.0        1.5    8.2   0.0    2.3  2  TniB       Bacterial TniB protein
      0.017   14.0   0.4        1.8    7.3   0.0    2.1  2  DLIC       Dynein light intermediate chain (DLIC)
      0.058   12.6   2.2       0.14   11.3   0.1    2.2  3  G-alpha    G-protein alpha subunit


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.2   3.7e-37   9.4e-34       1     159 [.      36     198 ..      36     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 3.7e-37
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K+ ++Gds++GKtsl++++v+++F+e+y++T+gv+f++k+i+v+ +++++++wD  Gq ef ++ +l+ +da +il ++d+++++++++vk+w+++ + 
  CDO69058.1  36 KVGMLGDSQIGKTSLMVKYVEGHFDEDYIQTLGVNFMEKTITVRRTSITFSLWDLGGQREFVNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARG 134
                 6779**********************************************************************************************9 PP

                 HSTTTSEEEEEEETTTGGG......G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee......kravsteegeelakelglkfletSAktnenveeafeellre 159
                   ++     L+G+K D         +++++ ++++++ak +++  + +S   + nv+++f+ +l +
  CDO69058.1 135 FNKT-AIPFLIGTKFDTFAtfprdeQEEIT-KQAKRFAKAMHASLIFCSTSASINVQKIFKIVLAK 198
                 9996.66689******98889999666665.67899******9999999999********988776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   3.3e-28   8.5e-25       1     119 [.      36     149 ..      36     150 .. 0.91
   2 ?   -2.5   0.0       2.2   5.6e+03      66      96 ..     159     189 ..     158     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 3.3e-28
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE.GHHH..HCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd.srss..enlk 96 
                 Kv ++Gds++GKtsl+ ++ve++f+e++ +t+gv+f++k++ +++        +++++++WD++Gq +f ++ pl +++a ++++++d sr+s  +++k
  CDO69058.1  36 KVGMLGDSQIGKTSLMVKYVEGHFDEDYIQTLGVNFMEKTI-TVRR-------TSITFSLWDLGGQREFVNMLPLVCNDAVAILFMFDlSRKStlNSVK 126
                 899************************************98.4443.......579********************************8444333799* PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 eW+++ +  +++++ +l+g+k D
  CDO69058.1 127 EWYRQARGFNKTAIPFLIGTKFD 149
                 *********************99 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                 GGCTTTT-HHHHCTSCEEEEEEEGHHHHCHH CS
         Roc  66 qerfrslhplylreaalailvydsrssenlk 96 
                 qe++ + ++ + ++ ++ ++++ ++ s n++
  CDO69058.1 159 QEEITKQAKRFAKAMHASLIFCSTSASINVQ 189
                 6666677777777777777776666555554 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   2.6e-11   6.7e-08      14     160 ..      34     184 ..      23     199 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.6e-11
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEE..EEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnv..eelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                  +++ +lG  + GKt ++ k+ ++++++  + T+g n   +++++    ++f++wD+GGq++  ++     ++  a++f+ D + ++ l++ ke  ++ 
  CDO69058.1  34 VIKVGMLGDSQIGKTSLMVKYVEGHFDEdYIQTLGVNFmeKTITVrrTSITFSLWDLGGQREFVNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQA 132
                 478889**99***************9986899999886223444444789*************************************999998776653 PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG.SSSSSSEEEEEEBTTT CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelrellglee.lkgkrkleiqkcsavk 160
                   +  +k+++  +++ K D+  +  ++e +e+ +  +   ++ + +++ cs+  
  CDO69058.1 133 --RGFNKTAIPFLIGTKFDTFATFPRDEQEEITKQAKrFAKAMHASLIFCSTSA 184
                 ..3334444445557788888887777777765554434445555666666555 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   1.2e-10     3e-07       2     158 ..      37     183 ..      36     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.2e-10
   Gtr1_RagA   2 vLLmGksgsGKts.mrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlk 99 
                 v ++G s+ GKts m + +   +    +++lg+    +  +vr    +t++lwD+gGq++fv+         + ++  +++++fD +    +++l++ k
  CDO69058.1  37 VGMLGDSQIGKTSlMVKYVEGHFDEDYIQTLGVNFMEKTITVR-RTSITFSLWDLGGQREFVNML-----PLVCNDAVAILFMFDLS---RKSTLNSVK 126
                 5689*********445666666666667789998888888886.6789**************996.....668888889*******9...789999999 PP

   Gtr1_RagA 100 eilealrqyspeakvfvlihKmDliqedereeifeerkeeireeieklekeeiqffaTS 158
                 e  +++r +++ a  f +  K+D  +   r+e +ee++++ ++ ++ ++ + + f +TS
  CDO69058.1 127 EWYRQARGFNKTAIPFLIGTKFDTFATFPRDE-QEEITKQAKRFAKAMHAS-LIFCSTS 183
                 *****************99*****97555544.555566666666655533.3333333 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00057       1.5      39      62 ..      38      61 ..      25      76 .. 0.85
   2 ?    4.1   0.0      0.01        26      94     167 ..     114     187 ..     105     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00057
        TniB 39 llvGdsnnGKtmivekFarlhppe 62
                 ++Gds++GKt+++ k+ + h +e
  CDO69058.1 38 GMLGDSQIGKTSLMVKYVEGHFDE 61
                589**************9999655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
        TniB  94 lgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealr 167
                 +    k++ +  k  ++  r ++++ +  Li   ++ + +  +++q+e++ + k++   ++ +++ + t + ++
  CDO69058.1 114 FDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDTFATFPRDEQEEITKQAKRFAKAMHASLIFCSTSASIN 187
                 55555555555556666678889999999999999999***************************999887766 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0032       8.1      28     125 ..      37     130 ..      21     141 .. 0.73
   2 ?    7.3   0.0   0.00069       1.8     225     270 ..     162     207 ..     140     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0032
        DLIC  28 vlvlGedgsGkttliak.lqGveeekkGrGleylyldvkdedrddltrlnvwildGdlyhkgllkfaleaeslkdtlvilvvdlsrPwtileslqkwas 125
                 v +lG++  Gkt+l+ k + G  +e   + l   +++     r      + w l G     ++l    +        ++++ dlsr  ++l+s+++w +
  CDO69058.1  37 VGMLGDSQIGKTSLMVKyVEGHFDEDYIQTLGVNFMEKTITVRRTSITFSLWDLGGQREFVNMLPLVCNDA----VAILFMFDLSRK-STLNSVKEWYR 130
                 5689***********99567875555555555555666666677777788888888888888888776643....457788888886.56788888866 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00069
        DLIC 225 iqshirrfclqyGaallytsvkedknldllykylvhkiyglpfrtP 270
                 i +  +rf   + a+l++ s     n+  ++k +  k ++l+  +P
  CDO69058.1 162 ITKQAKRFAKAMHASLIFCSTSASINVQKIFKIVLAKAFDLKCVIP 207
                 667789***********************************98888 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.098   2.5e+02      15      40 ..      26      51 ..      18      62 .. 0.78
   2 ?   11.3   0.1   5.4e-05      0.14     186     236 ..      64     117 ..      53     124 .. 0.80
   3 ?   -2.7   0.0         1   2.6e+03     319     319 ..     162     162 ..     132     198 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.098
                XXXXXE..EEEEEEEESTTSSHHHHH CS
     G-alpha 15 rkarkkkrevkllllGqseSGKsTil 40
                +  ++++  +k+ +lG s+ GK++++
  CDO69058.1 26 NGSEQNSVVIKVGMLGDSQIGKTSLM 51
                4444555689*************985 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.4e-05
                 ----SEEEEEEEC...T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGG CS
     G-alpha 186 lktvGisetkfev...dsklefrivdvgGqrserkkWvpffddvdaiiFlvsls 236
                 ++t+G++ ++  +   +++++f ++d+gGqr+  +    + +d+ ai+F+  ls
  CDO69058.1  64 IQTLGVNFMEKTItvrRTSITFSLWDLGGQREFVNMLPLVCNDAVAILFMFDLS 117
                 5778887777777779679************6654444455*********9998 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1
                 C CS
     G-alpha 319 i 319
                 i
  CDO69058.1 162 I 162
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1553.66
//
Query:       CDO69059.1  [L=534]
Description: Glycoside Hydrolase Family 18 / Carbohydrate-Binding Module Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-69  234.8  10.3    5.1e-68  230.1  10.3    2.2  1  Glyco_hydro_18  Glycosyl hydrolases family 18
      0.001   19.5   6.0      0.001   19.5   6.0    2.8  2  CBM_5_12        Carbohydrate binding domain
  ------ inclusion threshold ------
       0.14   12.0   4.0       0.28   11.0   2.5    2.1  2  PknH_C          PknH-like extracellular domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.1  10.3   8.5e-72   5.1e-68       3     312 .]      63     419 ..      61     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: 230.1 bits;  conditional E-value: 8.5e-72
                     EEEEEGGGGGSSGC....SHTTTESEEEEEEEEEEETTTEEEESS.TTHH.................HHHHHHHHHHHHTSTT-EEEEEEEETTT CS
                     xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   3 vgYysswesygnny....lpsaklthiiyaFakidgengkvvvsd.wedl.................gnfeqlkklkkkknpgvkvllsiGGwtd 75 
                     ++Y+++w+ yg+n+    ++++ lthi+yaFa++++++g ++++d ++d                  g+++ql  lk ++n+++kvlls+GGwt+
      CDO69059.1  63 AAYFTNWGIYGANFqptdIDPTTLTHIVYAFADVSSDTGAITLTDsYADEqkhfpgdswdepgnnlyGCLKQLYLLK-LNNRNLKVLLSVGGWTY 156
                     58********7764456899*************************999999999******9***99999********.***************** PP

                     TT..HHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHH..HHHHHTSTTCEEEEEEESSHHHHHHHCHH CS
                     xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  76 ss..gfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelreald..kakategkkllLsaavpasasdlskgydl 166
                     s+  +fs ++  +++r++f+ s+vs++++ygfDGiDid+eyp++ ++ ++++  ll+ lr+a+d  ++++ + + ++L+aavpa+ ++++ + ++
      CDO69059.1 157 SQagHFSFVTD-ATKRATFVTSAVSMIENYGFDGIDIDFEYPNS-ADLANGFASLLASLRTAFDnlQKQKGDSTPYQLTAAVPAGSDNYE-WLEV 248
                     77779999965.7*****************************99.44499**************64444489999**********99975.4477 PP

                     HHHHHHT................SEEEEETTTSSSTTSSBE--SS-SSB...TCSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS.. CS
                     xxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Glyco_hydro_18 167 pkiakyl................DyvnvmtYDfhgswdnvtghhaplyd...aslnvdeavkeylkagvpakklvlGvpfygrawalvsgadn.. 240
                     p+++++l                   + ++YD+ gsw + ++ +a+ly+   +++++d+avk y+++g++a+k+++G+p ygra++ ++g ++  
      CDO69059.1 249 PQMNAALtywnlmvrslgfstylELTQSQAYDYAGSWLTWADNQANLYGgarTNVSTDKAVKWYIANGASANKINMGIPLYGRAFEDTTGIGApf 343
                     777777733333344445554445555567888889999999*******8644********************************9998844477 PP

                     ......TSTTTEEEHHHHHHHHTEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 241 ......tkeegvlsykelkellkkakakrkydskakapyvydge..efvsyDdpksikakadyvkakglgGvmiWsldqD 312
                           t e+g++sy +l+      +a++  + +++++y yd+   e+vsyD+p  ++ ka+yv+++gl+G m+W+l+ D
      CDO69059.1 344 ngigpgTTEAGIYSYTDLPLA----GAQVFENLTDVSSYSYDSAkkELVSYDTPHIVTIKAQYVQSNGLAGSMFWDLSTD 419
                     888888***********9984....666666667777999999999*******************************988 PP

>> CBM_5_12  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         3   1.8e+04       8      16 ..     308     317 ..     307     319 .. 0.72
   2 !   19.5   6.0   1.7e-07     0.001       1      25 []     505     528 ..     505     528 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3
    CBM_5_12   8 A.kwwtqggq 16 
                 A kw+  +g 
  CDO69059.1 308 AvKWYIANGA 317
                 5599998875 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.7e-07
    CBM_5_12   1 ynGkaYqAkwwtqggqPattangpW 25 
                 y+G+++ Akwwt g++P+++a+ +W
  CDO69059.1 505 YQGHLWTAKWWTEGDTPGGSAG-VW 528
                 9*******************98.99 PP

>> PknH_C  PknH-like extracellular domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.24   1.4e+03      72     101 ..     416     445 ..     399     453 .. 0.70
   2 ?   11.0   2.5   4.7e-05      0.28      15      73 ..     453     511 ..     450     520 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.24
                 EE-SSTT-SEEEEEEEEE-SSHHHHHHHHH CS
      PknH_C  72 lrdsaddgaslvsqavvafptadaAqaffa 101
                 l++++++++slv+ ++ +f++ d+ q+ ++
  CDO69059.1 416 LSTDKTGAESLVGTTAGVFGSLDQTQNHIN 445
                 45566666666*********9998887665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.7e-05
                 HHHHHHT-S.--EE-S-B-S-B-S--EESSGG..GHHHH-SSBHHHHTTS---EEEEEEEE CS
      PknH_C  15 elaailGtpeaasatesdttppdtaasvdppe..ClgvasageesvYggsgvtavagqtlr 73 
                  +++ +Gt   +s++++++ +p t+ +++p    C+gva+ +++svY+g + ++++g+ + 
  CDO69059.1 453 NIRNNMGTS--SSSSTTSVGSPTTTPTSQPTGgsCAGVAAWSASSVYTGGQQATYQGHLWT 511
                 578889988..45555555555555555544466****************88888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3777.39
//
Query:       CDO69060.1  [L=634]
Description: Glycoside Hydrolase Family 18 / Carbohydrate-Binding Module Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-77  259.6   8.3    5.4e-77  259.6   8.3    1.8  2  Glyco_hydro_18  Glycosyl hydrolases family 18
  ------ inclusion threshold ------
      0.031   14.9   8.5       0.14   12.8   8.5    2.3  1  CBM_5_12        Carbohydrate binding domain
        1.8    8.1  19.7        2.8    7.5  19.7    1.3  1  DUF572          Family of unknown function (DUF572)
        2.3    7.1  27.8        3.1    6.6  27.8    1.1  1  DUF936          Plant protein of unknown function (DUF936)


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   8.3   1.2e-80   5.4e-77       3     312 .]      65     405 ..      63     405 .. 0.93
   2 ?   -2.6   2.1      0.79   3.5e+03     237     237 ..     516     516 ..     423     621 .. 0.45

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 1.2e-80
                     EEEEEGGGGGSSGC....SHTTTESEEEEEEEEEEETTTEEEESS.TTHH.................HHHHHHHHHHHHTSTT-EEEEEEEETTT CS
                     xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   3 vgYysswesygnny....lpsaklthiiyaFakidgengkvvvsd.wedl.................gnfeqlkklkkkknpgvkvllsiGGwtd 75 
                     ++Y+++w+ yg+n+    ++++ lthiiyaFa++++++g+++++d w+d                  gn++ql  lk +k++++kv+lsiGGwt+
      CDO69060.1  65 AAYFTNWGIYGANFqptdINPTPLTHIIYAFADVSPDTGTISLTDsWSDEqkhyagdswndvgnnlyGNLKQLYLLK-LKQRNLKVILSIGGWTY 158
                     58********7764445788***************************999**************9999999999999.99999************ PP

                     TT..HHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHH..HHHHHTSTTCEEEEEEESSHHHHHHHCHH CS
                     xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  76 ss..gfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelreald..kakategkkllLsaavpasasdlskgydl 166
                     s+  +fs ++  +++r++f+ ++vsl+++ygfDGiDid+eyp +n+  ++++  ll+ lr+a+d  +a++ + + ++Lsaavpa+ ++++ + ++
      CDO69060.1 159 SQygHFSFVTD-ATKRATFVTNAVSLIENYGFDGIDIDFEYPTSNAL-ASGFASLLTSLRTAFDnlQAQKGDSTPYELSAAVPAGSDNYQ-WLNV 250
                     88889999965.7*****************************99877.99**************6555559999***********99975.56** PP

                     HHHHHHTSEEEEETTTSSSTTSSBE--SS-SSB...TCSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS........TSTTTEEEHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxx RF
  Glyco_hydro_18 167 pkiakylDyvnvmtYDfhgswdnvtghhaplyd...aslnvdeavkeylkagvpakklvlGvpfygrawalvsgadn........tkeegvlsyk 250
                     p ++k+l + n+m+YD+ gsw ++t+ +a+ly+   +++++d+a+k y+++g+ ++k+++G+p ygra+++++g ++        t e+g++syk
      CDO69060.1 251 PVMNKALTHWNLMAYDYAGSWLTFTDNQANLYGgerTNVSTDKAIKWYIANGATPSKITMGIPLYGRAFENTNGIGAsysgigpgTIEAGIYSYK 345
                     *********************************8644**********************************99944477788888********** PP

                     HHHHHHTEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 251 elkellkkakakrkydskakapyvydge..efvsyDdpksikakadyvkakglgGvmiWsldqD 312
                      l+     a+a+++ + +++++y yd++  e+vsyDdp  ++ ka+yv ++glgG m+W+l+ D
      CDO69060.1 346 VLPL----AGATVYENLTDVTSYSYDSSkrELVSYDDPHIAQLKAQYVSDNGLGGSMFWDLSTD 405
                     9998....5899999999999****************************************988 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.79
                     S CS
                     x RF
  Glyco_hydro_18 237 g 237
                      
      CDO69060.1 516 A 516
                     0 PP

>> CBM_5_12  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   8.5   3.1e-05      0.14       1      25 []     605     628 ..     605     628 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
    CBM_5_12   1 ynGkaYqAkwwtqggqPattangpW 25 
                 ynG+++ Akwwt+++ P++ a+ +W
  CDO69060.1 605 YNGHLWTAKWWTYNDVPGGQAG-VW 628
                 9**************9999887.88 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  19.7   0.00063       2.8     222     314 ..     452     553 ..     376     583 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00063
      DUF572 222 slfasseesaksakkkpt.kk....esskekkkeslekklskltkkkadsslvvrKkkkeeekskeskekteeeskeseeeskkeeetsaeeekee... 312
                 s+++++++s++s++ ++t ++    +s++++k++s ++k s+ t+k    s    K ++++  +k+s++k++++s++s++++++++++s+++       
  CDO69060.1 452 STSSRASTSSTSTR-SSTsSTrassTSKTTTKASSTTTKASSTTTK---ASSTTTKASSTT--TKASSTKASSTSTKSTSTTSTSASSSTTK---Rsst 541
                 11111111111111.1111111111111111111111111111111...112222222221..11111111111111111111111111111...0111 PP

      DUF572 313 ..........ka 314
                           ++
  CDO69060.1 542 stlrsictprSS 553
                 233444444422 PP

>> DUF936  Plant protein of unknown function (DUF936)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  27.8   0.00068       3.1     207     336 ..     446     573 ..     391     613 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00068
      DUF936 207 rsipsSptsly....errvslspsserlsndvkqkskvkgleksskkkvgllekaesklsetssnsvksissslkalRksWdesaevkkeeskekkakk 301
                 +s+ sS+ts+      +++  s+ss+r s+  k+ +k   ++++ +k +++  ka+s+ +++ss++ k++  s+ka   s + ++ + +++ +++++k+
  CDO69060.1 446 QSTGSSSTSSRastsSTSTRSSTSSTRASSTSKTTTK---ASSTTTKASSTTTKASSTTTKASSTTTKAS--STKASSTSTKSTSTT-STSASSSTTKR 538
                 2222222222200001111222233333333333222...223333334444444444444433222222..223332232222222.22333336666 PP

      DUF936 302 dkkselrsqsarrsssvssekssskddskkqtsak 336
                  ++s lrs  ++rss++s ++ss +  s+++tsa+
  CDO69060.1 539 SSTSTLRSICTPRSSTTSASSSSTSTASSTSTSAS 573
                 66666666666666655555555544433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2434  (0.135758); expected 358.6 (0.02)
Passed bias filter:                      768  (0.0428356); expected 358.6 (0.02)
Passed Vit filter:                       303  (0.0169); expected 17.9 (0.001)
Passed Fwd filter:                        85  (0.00474092); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.48u 0.38s 00:00:01.86 Elapsed: 00:00:00.54
# Mc/sec: 3520.87
//
Query:       CDO69061.1  [L=1034]
Description: hypothetical protein BN946_scf184992.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-91  306.9   0.0    3.7e-91  305.8   0.0    1.6  1  rRNA_proc-arch  rRNA-processing arch domain
    1.3e-54  184.2   0.6    3.3e-54  183.0   0.6    1.7  1  DSHCT           DSHCT (NUC185) domain
    3.8e-14   52.8   0.4      2e-10   40.7   0.1    3.9  2  DEAD            DEAD/DEAH box helicase
    1.4e-07   31.8   0.0      1e-06   29.1   0.0    2.4  1  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.022   14.8   0.1          5    7.1   0.0    2.8  3  ResIII          Type III restriction enzyme, res subunit
       0.03   13.4   0.0      0.074   12.1   0.0    1.6  1  T2SSE           Type II/IV secretion system protein
      0.095   12.1   0.1        1.9    7.8   0.0    2.7  2  AroM            AroM protein
       0.13   12.5   0.0        3.5    7.8   0.1    2.5  2  MutS_III        MutS domain III


Domain annotation for each model (and alignments):
>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.8   0.0   1.6e-94   3.7e-91       1     269 [.     559     830 ..     559     831 .. 0.94

  Alignments for each domain:
  == domain 1  score: 305.8 bits;  conditional E-value: 1.6e-94
                     HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHGGG--TTEEEEEEETTTEEEEEEEEE CS
  rRNA_proc-arch   1 EyMlerSFsqfqnqkslpelekklkeleeelksitiedeedieeyyklrqqleelreeirkiltkpknilpfLqpGRlvrvksnddldfgwGivl 95 
                     EyMler+F+qfq+ +++p +e++lk+ ee+ ++i+++dee +++yy+ rqql+++ +++r+++t+p+++lpfLqpGRlv+vk +++ldfgwG+++
      CDO69061.1 559 EYMLERCFYQFQHNAEVPVIEAELKREEEKKAAIVVPDEELVASYYEYRQQLDQMAADFREVITHPNYSLPFLQPGRLVKVK-HQKLDFGWGVIV 652
                     9*********************************************************************************.************ PP

                     EEEE-..SSS..T.TB-.--TCTTEEEEEEEEEEETTS-GGG--TT--S--TT--B-TT..S-EEEEEEEEEGGGEEEEEEEEE---SSTTSTTH CS
  rRNA_proc-arch  96 nfkkr..nkn..skeee.asdeesyvVdvllvlsenskrkdedgekseesaeelkPkagdrekgevevvpvplkcieaiSsvrlklpkdlrksea 185
                     n++kr  +kn  +++ e ++++e+y+Vdvll ++++s   ++++  +  ++++++P+ +    ge+ vvpv l++ie+iS++r+++pkdlr+s++
      CDO69061.1 653 NYQKRlpPKNrpGPKLEdVPAHEQYIVDVLLYCAKGSTLPKDRN-TTTPTPGSVQPC-PSGRGGEPLVVPVLLSTIESISRLRIFMPKDLRPSQQ 745
                     **9668844445444446999999************98765555.67778******7.55688999***************************** PP

                     HHHHHHHHHHHHHHSS.---B--TTTTS----HHHHHHHHHHHHHHHHHHTSGG.GSSSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch 186 reevakavqelkrrfp.giplldpikdmkikdeefkkllkkiealesrlaknpllhspnleelyalyekkvalqeeikelkkeis 269
                     re+++kav e+++rfp giplldpi dmki+de+fk+l++ki+ +e+++ ++pl+++p+l+ely ly++k++ q++i+elkk+i+
      CDO69061.1 746 RETTWKAVLEVQSRFPkGIPLLDPIADMKITDEKFKELVQKIDTMEKKMFSSPLHNDPRLPELYTLYARKREHQNRIRELKKRIQ 830
                     ******************************************************779*************************996 PP

>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.0   0.6   1.5e-57   3.3e-54       2     159 ..     858    1022 ..     857    1029 .. 0.94

  Alignments for each domain:
  == domain 1  score: 183.0 bits;  conditional E-value: 1.5e-57
       DSHCT    2 ntvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepklseeleealeelkeiaeriakvs............ve 86  
                  + v +kGrva+ei+++deLlltel+f+gv+++l+pe++a+lls++vf ek+e+  +  +kl+eel+ +l+ ++eia+riakvs            v+
  CDO69061.1  858 DIVDMKGRVACEISTGDELLLTELIFNGVFNTLSPEQCAGLLSCFVFTEKSEQ--V--TKLKEELAAPLRVMQEIARRIAKVSkesklpinedeyVQ 950 
                  6899*********************************************9765..3..378*********99**********************766 PP

       DSHCT   87 srldlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikR 159 
                  s ++ +l+++v +W++gasf+++++ td +eG+++R++rrl+el+rq+a+aakvign+eL++k+e+a+e+++R
  CDO69061.1  951 S-FKVELMDAVVQWCRGASFSDICKLTDQFEGSLIRVFRRLQELIRQMAQAAKVIGNTELQEKFEKASEMLER 1022
                  5.9*********************************************************************9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   8.9e-14     2e-10       2     172 ..     118     257 ..     117     260 .. 0.86
   2 ?    4.6   0.0     0.011        24      33      78 ..     575     619 ..     568     656 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.9e-14
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 + Q+ ++ +i ++++vlv+a+T +GKT ++  ++ q++    +++          r+L +q ++++   +      v l++g+v+ +         + +
  CDO69061.1 118 PFQQVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCL----QQK---------QRALSNQKYREMLAEFGD----VGLMTGDVTINPS-------ATC 192
                 679999********************************....334.........489******999766664....4466777776433.......557 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +v+t++ l ++l +g+  +++v ++++DE++ + d++++  +++ +  l       + + + ++lSAT+p+ 
  CDO69061.1 193 LVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILL-------PHSVRYVFLSATIPNA 257
                 7***********999988**************************99999.......56778********954 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
                 HHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
        DEAD  33 ipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrv 78 
                 +pv+++ +  k+++++ka iv+P +eL+   ++  +++ +  +d r+
  CDO69061.1 575 VPVIEAEL--KREEEKKAAIVVPDEELVASYYEYRQQLDQMaADFRE 619
                 56665544..699999*************999988887775444554 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   4.5e-10     1e-06      20     111 .]     399     505 ..     350     505 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.5e-10
                 EEEESSHHHHHH.......HHHHHHHT.....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.........SSH CS
  Helicase_C  20 lifvntidrlek.......vklllekk.....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.........rnv 97 
                  if n i++l         ++     +     +  + ++hg l    +e i   f++g ++vL at   + G+++p  ++V+   +           + 
  CDO69061.1 399 NIFNNAIENLAPedrqlpqIS-----NllpllKRGIGIHHGGLLPILKEVIEILFQEGLIKVLFATETFSIGLNMPAKTVVF-TAARkfdgrdfrnLSS 491
                 578888886654533333322.....133334778888**************************************655555.4444466667633336 PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                  +yiq++GR+gR g
  CDO69061.1 492 GEYIQMSGRAGRRG 505
                 ************75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0022         5      21      53 ..     121     159 ..      89     174 .. 0.77
   2 ?    4.5   0.0     0.014        32     135     170 ..     216     255 ..     179     256 .. 0.77
   3 ?   -2.9   0.0       2.6   5.8e+03      49      71 ..     582     604 ..     577     628 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                 ........TTSEEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII  21 s......krdkrglikmaTGtGKTlvaaklierllkkgk 53 
                 +      +r++ +l+ + T +GKT+va  +i+++l++++
  CDO69061.1 121 QvsvyaiQRNESVLVSAHTSAGKTVVAEYAIAQCLQQKQ 159
                 133444479999***************666666666544 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
                 EEEEETGGGTTS.T...TTHH.HHHT---SEEEEEESS-S CS
      ResIII 135 viiiDEaHrlgakk...swre.ilekfkeavllglTATpe 170
                  +i+DE H +++k+    w+e i+    +   + l+AT++
  CDO69061.1 216 WVIFDEIHYMRDKErgvVWEEtIILLPHSVRYVFLSATIP 255
                 79**********7578899996655555677788889875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.6
                 -S.....-EEEEESSHHHHHHHH CS
      ResIII  49 lkkgkeekflflvprkslleqtl 71 
                 lk ++e+k+ ++vp ++l+   +
  CDO69061.1 582 LKREEEKKAAIVVPDEELVASYY 604
                 44556779999999998887655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.3e-05     0.074     118     158 ..     119     160 ..      83     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttll.yallkeinksde 158
                 +++v  +a++++ ++lvs  T+ GKt+++ ya+ + ++++++
  CDO69061.1 119 FQQVSVYAIQRNESVLVSAHTSAGKTVVAeYAIAQCLQQKQR 160
                 566667899*******************97888888888754 PP

>> AroM  AroM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00084       1.9      40      89 ..     120     169 ..     115     204 .. 0.88
   2 ?    0.6   0.0      0.14   3.1e+02      64     173 ..     513     618 ..     505     622 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00084
        AroM  40 eeiaalapeegeavlvsrlrdGesvvlskekveprlqaaiakleeegvdl 89 
                 ++++ +a++ +e vlvs  ++  + v+++ ++++ lq++ + l +++++ 
  CDO69061.1 120 QQVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLQQKQRALSNQKYRE 169
                 467779***************************************98865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.14
        AroM  64 vvlskekveprlqaaiakleeegvdlilllcTgefpeleakapliepqrileslvaalvkkkqlgvivPleeqaeqaekkweelakevvvavaspygse 162
                 +++  ek+ep+ ++++ k e+++ d  + l    + +l  k+  i p+ +le+++ ++ ++ ++ vi     + + +e+k +++  + +  vas y+ +
  CDO69061.1 513 IMMCDEKLEPAAAKEMIKGEADRLDSAFHLGYNMILNL-MKVEGISPEYMLERCFYQFQHNAEVPVIEA---ELKREEEKKAAIVVPDEELVASYYEYR 607
                 66677777777777777777777777777777776666.456678888888888888888888888843...344444555666677777788888888 PP

        AroM 163 eelaeaarela 173
                 ++l++ a++++
  CDO69061.1 608 QQLDQMAADFR 618
                 88888888776 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.12   2.7e+02      77     152 ..     348     623 ..     336     842 .. 0.50
   2 ?    7.8   0.1    0.0016       3.5      37     132 ..     914    1021 ..     912    1029 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                 ---HHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTT---SSTHHHHHHH.HHHHHHHHB-SS--SSGGGS--B-T....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
    MutS_III  77 lpDleRllsrislgkakardlkallealkaleelvallekeklaeseees.laelleeaideeplalekegedlra....................... 151
                 ++D++++++ i l++ ++  +  ++ + +++e+l+ +++k + ++ +e++ +a++ ++ai + +++  + +++++                        
  CDO69061.1 348 SSDIQKIVKMIMLKNYNP--VIVFAFSKRECESLALTMSKMEFNSTDEQDlVANIFNNAIENLAPEDRQLPQISNLlpllkrgigihhggllpilkevi 444
                 567888888777755554..3222333333333334443333333333332234444444444444444444444455566666666666666655555 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
    MutS_III 152 ................................................................................................... 151
                                                                                                                    
  CDO69061.1 445 eilfqeglikvlfatetfsiglnmpaktvvftaarkfdgrdfrnlssgeyiqmsgragrrglddrgvvimmcdeklepaaakemikgeadrldsafhlg 543
                 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

                 ...............................................................................H CS
                 ...............................................................................x RF
    MutS_III 152 ...............................................................................i 152
                                                                                                 
  CDO69061.1 544 ynmilnlmkvegispeymlercfyqfqhnaevpvieaelkreeekkaaivvpdeelvasyyeyrqqldqmaadfrevitH 623
                 55555555555555555555555555555555555555555444444444444444444444444444444444444440 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0016
                  HHHHHH--BS-HHHHHHHHHHHHH.T..............TT.HHHHHHHHTT--.........-HHHHHHHHHTT---HHHHHHHHHHHHHHHTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xx............xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   37 LrewllqPltdleeInaRldaVee.le............neelreelrellrrlp.........DleRllsrislgkakardlkallealkaleelv 111 
                  L+e l +Pl+  +eI +R+  V+   +            + el +++                 D+ +l  ++    +  r +++l e ++++++ +
  CDO69061.1  914 LKEELAAPLRVMQEIARRIAKVSKeSKlpinedeyvqsfKVELMDAV-------VqwcrgasfsDICKLTDQFEG--SLIRVFRRLQELIRQMAQAA 1001
                  99*********************643344554333333322223333.......133334445588888888855..22233455555555555555 PP

                  TT---SSTHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx RF
    MutS_III  112 allekeklaeseeeslaelle 132 
                  ++ ++++l+e+ e + +e+le
  CDO69061.1 1002 KVIGNTELQEKFE-KASEMLE 1021
                  5555555444444.3335554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      777  (0.0433376); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 6774.66
//
Query:       CDO69062.1  [L=634]
Description: Glycoside Hydrolase Family 13 / Carbohydrate-Binding Module Family 20 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-32  109.8   0.1    7.9e-32  109.0   0.1    1.4  1  CBM_20           Starch binding domain
    3.9e-14   53.0   0.1    2.7e-13   50.2   0.1    2.0  1  Alpha-amylase    Alpha amylase, catalytic domain
    2.4e-13   50.3   0.0    8.3e-13   48.6   0.0    1.9  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain


Domain annotation for each model (and alignments):
>> CBM_20  Starch binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.1   1.3e-35   7.9e-32       2      95 ..     540     629 ..     539     631 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1.3e-35
      CBM_20   2 vsVtFkvnattqlgesvyivGsiseLGnWnpkkavklsaseqtssyplWsttvslpagtkieYkyikkdsdgsvtWesgenrsltvpssgsstt 95 
                 v+V+F  +att++ge++++vGsi++LGnWnp++a++ls    ++syp+W++++s+pa+t++eYk+i+k++dgsv+Wes++nr+ t+pssgs+t 
  CDO69062.1 540 VTVNFAETATTTFGENIFVVGSIPQLGNWNPASAIALS----AASYPMWTVSISIPADTTFEYKFIRKETDGSVVWESDPNREDTTPSSGSQTI 629
                 899****99*****************************....4689********************************************9985 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1   4.5e-17   2.7e-13      44     248 ..     122     301 ..     100     339 .. 0.64

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 4.5e-17
                    E-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSG.GGCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS- CS
  Alpha-amylase  44 idpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgep.krdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlfl 138
                    ++ + G+  ++ ++is++h+ g+ vi D ++NH+s   +    + ++ ++  +  +y  ++ ++   +p +   ++  +a+e +          +l
     CDO69062.1 122 LTSKRGDRTQFANMISACHAAGVGVIADTIFNHMSGIDSGTGVAGSSFTHYnYPGIYQNQDFHHCGLEPGDDI-VNYDNAVEVQ--------TCEL 208
                    345669*****************************98888555555444221222222222222233444433.3334444433........3457 PP

                    TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SIC CS
  Alpha-amylase 139 kklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlele 234
                    ++l+dL te e vr  l + ++ +l  g+dG+RlD++kh++           + ++   l+      k v++  Ev  ++ e   + +++++ +++
     CDO69062.1 209 DNLADLATETEYVRGRLAEYANDLLSLGVDGLRLDAAKHINV--------TDIANILSRLD------KSVYITQEVIFGEGEPITPNQYTGNGDVQ 290
                    89**************************************99........44455555555......44566666666666666666666655555 PP

                    ECCITTCGGGCC-C CS
  Alpha-amylase 235 mvldfphldvaqka 248
                       +f  + + ++a
     CDO69062.1 291 ---EFRYTTALKNA 301
                    ...44444444444 PP

>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.4e-16   8.3e-13       7      94 ..     448     523 ..     445     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.4e-16
                      TTSSEEEEEECTTTEEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-SSTSS-EEEECTTCBSEEEEEEESTTEEEEEE CS
  Alpha-amylase_C   7 eenkviaFeRgdgekllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsglgntgkvvtvdddgransltltlpprsalvlk 94 
                       ++++iaF Rg+  +++v++N+ + ++++++++++p +g y+dv+++ +++  gs   +tg ++ v++ g   slt t+p+rsa++ +
       CDO69062.1 448 PQSQQIAFGRGS--AGFVAINNADADWSTTFETSLP-DGSYCDVVSGASSN--GS---CTGSSFDVSS-G---SLTATVPARSAIAVH 523
                      5789*******9..9*********************.********999987..77...*********8.8...9***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4205.31
//
Query:       CDO69063.1  [L=238]
Description: hypothetical protein BN946_scf184992.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1655.64
//
Query:       CDO69064.1  [L=569]
Description: hypothetical protein BN946_scf184992.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-74  250.7   0.0    3.3e-74  250.2   0.0    1.2  1  FAD_binding_3   FAD binding domain
    1.6e-08   34.1   4.1    4.4e-05   22.9   0.3    2.5  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    4.3e-07   29.0   1.4    6.1e-06   25.2   0.3    2.5  2  HI0933_like     HI0933-like protein
    1.2e-06   28.4   3.6    1.8e-05   24.5   0.4    2.6  3  DAO             FAD dependent oxidoreductase
    1.3e-06   27.8   1.1    1.3e-06   27.8   1.1    1.7  2  FAD_binding_2   FAD binding domain
      1e-05   25.7   0.3    2.5e-05   24.4   0.3    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.4e-05   24.4   0.1    2.5e-05   23.6   0.1    1.4  1  Thi4            Thi4 family
    1.8e-05   25.2   2.6       0.23   12.0   0.1    3.0  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      2e-05   24.0   0.3    0.00035   19.9   0.1    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.8e-05   22.7   0.1    7.8e-05   21.7   0.1    1.5  1  Trp_halogenase  Tryptophan halogenase
    0.00026   20.5   0.8    0.00026   20.5   0.8    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
    0.00082   18.6   0.8     0.0014   17.8   0.8    1.3  1  GIDA            Glucose inhibited division protein A
     0.0073   16.3   1.3        0.8    9.7   0.1    3.1  3  NAD_binding_9   FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.018   14.1   0.3      0.052   12.6   0.2    1.8  2  Lycopene_cycl   Lycopene cyclase protein
      0.053   12.8   1.3        6.2    6.0   0.1    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
      0.074   13.5   0.1       0.16   12.5   0.1    1.5  1  NAD_binding_7   Putative NAD(P)-binding
        0.1   12.2   1.1       0.68    9.6   0.3    2.6  3  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.2   0.0   3.1e-77   3.3e-74       3     347 ..       8     361 ..       6     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: 250.2 bits;  conditional E-value: 3.1e-77
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC.........CEEEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt.........pkarad 89 
                    ++l+VGaGpaGl++al L+++Gv v+++ek++  +v++r+ g++ rt+e++r lGl d +l+ ++p   m+        +t         + ++  
     CDO69064.1   8 EILVVGAGPAGLIAALSLAKQGVTVRVIEKQTAFHVTSRGTGTHARTLEVYRFLGLLDDYLDVAVPMPQMRSYKLPG--GTepsrtwrlwEPIPPT 101
                    689*************************************************************9999887665444..33333446667555555 PP

                    HHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEE CS
  FAD_binding_3  90 lelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyea 185
                     +    +++  +++q +le i+++h+++ g+ v+ +te++ l++d++gvt +++++ t++ e+ r  Y++G DG+++++rk +g +f+g+ ++ + 
     CDO69064.1 102 PDRPILGNSKVLLGQYRLESIIRNHLAKLGVHVELATELVDLKHDGDGVTVKLKKNGTETVEETRVAYVIGSDGAKGITRKLMGATFQGQTKDEDG 197
                    55677888999********************************************************************************99654 PP

                    E.EEEEEEEC-SCCCTTC...CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEEEEEE CS
  FAD_binding_3 186 g.vldvlfdadlsdivep...lvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv.eieevsawtvaqr 276
                    + ++dv  +  +s+  +    ++li  +  ++ m+   +    ++ +++ ++    +  e +++++ ++ + e +g ++++  +i +++ w+ ++ 
     CDO69064.1 198 QvWADVELEGLTSEASSSltnIELINVNLISVTMLANGDG---DHHFHIGIMGIGFDPVELTDPKKFVEFISENIGRHDITFkRIISITYWKPKTC 290
                    4256666665555444447877777777777766666666...66677777776667788888899999999999999999989************ PP

                    EESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 277 vaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                    +++++ +grvf++GDAaH+h+PtgGqGlNt+iqD++nLawkLa+v++G A +elL +Ye+er++v+++++ 
     CDO69064.1 291 MVNRFYSGRVFIVGDAAHVHSPTGGQGLNTSIQDSFNLAWKLALVYNGLAPPELLASYETERLPVVNQMLA 361
                    *******************************************************************9986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.3   4.2e-08   4.4e-05       2      36 ..       8      42 ..       7      54 .. 0.90
   2 !   12.1   0.3   7.9e-05     0.083     183     261 ..     117     202 ..     106     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.2e-08
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtcl 36
                 +++v+G+GpAGl aal la++g+ v ++e++++++
   CDO69064.1  8 EILVVGAGPAGLIAALSLAKQGVTVRVIEKQTAFH 42
                 689*************************8777776 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.9e-05
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.....EEESEEEE-S-EEES-HHCS..HCCT-EEEETTEEE-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngeklevvledgee.....idadlvvvavGvrpstelle..eklglelderggivvd 261
                   +l+ +++++l k Gv+v l t+ ++++ +g+ ++v+l+++ +       + +v+ + G +  t+ l     +g + de+g++  d
   CDO69064.1 117 YRLESIIRNHLAKLGVHVELATELVDLKHDGDGVTVKLKKNGTetveeTRVAYVIGSDGAKGITRKLMgaTFQGQTKDEDGQVWAD 202
                  578999**************************777555444443656677777777778776666655577777777788877666 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.3   5.8e-09   6.1e-06       2      35 ..       8      41 ..       7      50 .. 0.90
   2 ?    2.0   0.0     0.064        67     114     156 ..     122     163 ..     118     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.8e-09
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 +++v+G+G+AGl aA+s+ak+g  V ++ek++++
   CDO69064.1  8 EILVVGAGPAGLIAALSLAKQGVTVRVIEKQTAF 41
                 689***************************9765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.064
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEES CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeelead 156
                  ++ ++l + gv+++l te+ +++++ dg ++vk+k++++ + +
   CDO69064.1 122 IIRNHLAKLGVHVELATELVDLKHDGDG-VTVKLKKNGTETVE 163
                  5678999***************999999.89998544333333 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.4   1.7e-08   1.8e-05       2      42 ..       9      49 ..       8      66 .. 0.82
   2 ?    4.2   0.1     0.025        26     153     202 ..     124     176 ..     114     247 .. 0.78
   3 ?   -2.9   0.0       3.6   3.8e+03      13      27 ..     527     541 ..     457     558 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.7e-08
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEE CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsg 42
                ++++G+G +Gl +A+ La++g  V ++ek+  a  + ++r +g
  CDO69064.1  9 ILVVGAGPAGLIAALSLAKQGvtVRVIEKQ-TAF-HVTSRGTG 49
                99****************************.555.55555544 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.025
                 HHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEE.E...EEEEEEE--GG CS
         DAO 153 araaealGveilegtevtgleeedgkvwgve...rttpgen.d...aadavVnaaGa 202
                 ++ +++lGv++ + te ++l++ dg++++v+   +   g++ +   ++ +v+ + Ga
  CDO69064.1 124 RNHLAKLGVHVELATELVDLKH-DGDGVTVKlkkN---GTEtVeetRVAYVIGSDGA 176
                 556899**************55.777788866552...3332122133447766665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.6
                 HHHHHHHHTT.EEEEE CS
         DAO  13 stAyeLarrg.Vtlle 27 
                 ++Ay+  ++g Vt++ 
  CDO69064.1 527 FAAYHI-EEGrVTVVA 541
                 455666.445555554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   1.1   1.3e-09   1.3e-06       2      38 ..       9      45 ..       8      51 .. 0.93
   2 ?   -2.2   0.1       1.6   1.7e+03     149     204 ..     125     178 ..     119     192 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.3e-09
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   ++V+G+G AGL AAl++a++G +v v+ek  +f  ++
     CDO69064.1  9 ILVVGAGPAGLIAALSLAKQGVTVRVIEKQTAFHVTS 45
                   89****************************9987765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                    HHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 149 esarkagvdfqerteadeLivedgrvtGavvenpesgrevrirak.avvlatgGfgr 204
                    +++ k+gv++   te+++L ++++   G++v+ +++g+e+  + + a v+ + G+++
     CDO69064.1 125 NHLAKLGVHVELATELVDLKHDGD---GVTVKLKKNGTETVEETRvAYVIGSDGAKG 178
                    556677788888888899977444...334444477777776777777777777775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.3   2.4e-08   2.5e-05       1      29 [.      11      39 ..      11      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.4e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   +vGaG +Gl aA  Lak+g+ v ++ek++
     CDO69064.1 11 VVGAGPAGLIAALSLAKQGVTVRVIEKQT 39
                   8**************************96 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   2.4e-08   2.5e-05      15      57 ..       4      45 ..       1      59 [. 0.85

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.4e-08
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                 a  ++++vGaG++GL aa  lak+ ++ v ++e++ ++   +
  CDO69064.1  4 KATKEILVVGAGPAGLIAALSLAKQ-GVTVRVIEKQTAFHVTS 45
                57789********************.*********99986555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   0.00024      0.26       2      33 ..       9      40 ..       8      54 .. 0.91
   2 !   12.0   0.1   0.00022      0.23      42      79 ..     119     155 ..     109     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                ++vvG+G  gl +A  la+ g  V v+e +  
  CDO69064.1  9 ILVVGAGPAGLIAALSLAKQGVTVRVIEKQTA 40
                89**************************8765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgvesvklk 79 
                 +++i++++l k+g++v l t+++ +++++dgv+ vklk
  CDO69064.1 119 LESIIRNHLAKLGVHVELATELVDLKHDGDGVT-VKLK 155
                 67899**************************76.8887 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.4e-07   0.00035       1      32 [.      10      40 ..      10      46 .. 0.90
   2 ?    1.9   0.0       0.1   1.1e+02     208     273 ..     117     179 ..     111     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.4e-07
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 +++GaGPaGl aa+ l k g+ ++ ++Ek+++
   CDO69064.1 10 LVVGAGPAGLIAALSLAKQGV-TVRVIEKQTA 40
                 69*******************.7******976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.1
  Pyr_redox_3 208 yslkpdienrleelvkeekikvlfnaevkeikekeeeykvk.tedgkkvevkddvvlatGykpdlsf 273
                  y+l+ +i+n l++l   + ++v+  +e+ ++k++   ++vk +++g+++ ++++v +++G +    +
   CDO69064.1 117 YRLESIIRNHLAKL---G-VHVELATELVDLKHDGDGVTVKlKKNGTETVEETRVAYVIGSDGAKGI 179
                  66777777777765...3.788888999999999999999967788888888888888997765554 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   7.4e-08   7.8e-05       2      61 ..       9      66 ..       8      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.4e-08
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---.SS-EE--THHHHTHHHHT--HH CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtv.gvGeatipsirkllrlLgidee 61
                    i++vG+G+aG +aA  lak++   ++v ++e+++ + v   G +t   + +++r+Lg+ ++
      CDO69064.1  9 ILVVGAGPAGLIAALSLAKQG---VTVRVIEKQTAFHVtSRGTGTHARTLEVYRFLGLLDD 66
                    99*******************...99******997766257999*999999******9876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.8   2.5e-07   0.00026       2      31 ..       9      38 ..       8      41 .. 0.94
   2 ?   -2.6   0.1       2.5   2.7e+03      90     134 ..     120     162 ..     115     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.5e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  ++VvG+gpaG++AA++ a++G +v ++e++
    CDO69064.1  9 ILVVGAGPAGLIAALSLAKQGVTVRVIEKQ 38
                  99**************************87 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
  FAD_oxidored  90 kavleemlaeagvtvllntrlvevekegkriesvtveske.grkti 134
                   ++++ + la+ gv+v l t+lv+ + +g   ++vtv+ k+ g++t+
    CDO69064.1 120 ESIIRNHLAKLGVHVELATELVDLKHDG---DGVTVKLKKnGTETV 162
                   5677888899999************998...566665555466665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.8   1.3e-06    0.0014       2      32 ..       9      39 ..       8      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkl 32
                + V+G+G AG+ AAl +a+ G+ v  i +++
  CDO69064.1  9 ILVVGAGPAGLIAALSLAKQGVTVRVIEKQT 39
                78***********************996554 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00076       0.8       2      36 ..      11      40 ..      10      54 .. 0.84
   2 ?    3.5   0.0     0.061        64      95     146 ..     113     162 ..     109     172 .. 0.67
   3 ?   -0.8   0.0       1.3   1.4e+03     119     151 ..     532     567 ..     519     569 .] 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00076
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   +vGaGp+Gl ++  L+++      +++ +++++++
     CDO69064.1 11 VVGAGPAGLIAALSLAKQG-----VTVRVIEKQTA 40
                   8***************995.....88888887654 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.061
  NAD_binding_9  95 lyGrY.lrdlfeellarlpegvtvev.hraevvdleeradgqavlladgaslaa 146
                    l+G+Y l++++++ la+l     v+v + +e vdl+ ++dg++v l+++ + ++
     CDO69064.1 113 LLGQYrLESIIRNHLAKL----GVHVeLATELVDLKHDGDGVTVKLKKNGTETV 162
                    566664455555555555....444424789***********999977766544 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
  NAD_binding_9 119 vhraevvdleeradgq...avlladgaslaadaVvL 151
                    + +++v+ ++ r+dg+    v+ a g ++ + +++L
     CDO69064.1 532 IEEGRVTVVAVRPDGYvgaFVHDAAGVQTYFSHIFL 567
                    335678888888888655479999999999999988 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     5e-05     0.052       2      33 ..       9      38 ..       8      49 .. 0.87
   2 ?   -3.3   0.0       3.4   3.6e+03     349     361 ..     291     303 ..     273     332 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieas 33
                   ++v+GaGpAgl  A  l  ak+g+ v +ie  
     CDO69064.1  9 ILVVGAGPAGLIAALSL--AKQGVTVRVIEKQ 38
                   79***************..9999999999865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.4
  Lycopene_cycl 349 llqrFlasrlsla 361
                    +++rF+++r++  
     CDO69064.1 291 MVNRFYSGRVFIV 303
                    5566666665443 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0059       6.2       2      22 ..      17      37 ..      16      40 .. 0.94
   2 ?    5.7   0.1     0.007       7.4     215     257 ..     126     171 ..     115     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0059
                   HHHHHHHHHHHTTEEEEEEES CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEa 22
                   aGL+aA  L+ +G+ V v+E 
     CDO69064.1 17 AGLIAALSLAKQGVTVRVIEK 37
                   9*******************7 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.007
                    HHHHTTTTEEEETSEEEEEEEEETTCEEEEET.TSTEE....EESEEE CS
  Amino_oxidase 215 alaeelrgldirlntrVkeikregdgvtvtle.dgevv....eaDaVv 257
                    +la+  +g+ + l t++ ++k++gdgvtv+l+ +g+++    ++ +V+
     CDO69064.1 126 HLAK--LGVHVELATELVDLKHDGDGVTVKLKkNGTETveetRVAYVI 171
                    4555..9***********************996555545666666665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00015      0.16       6      40 ..       5      39 ..       1      69 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvapev 40
                    +k++lvvG+G+ ++  + +l+++g +v v+ +++
     CDO69064.1  5 ATKEILVVGAGPAGLIAALSLAKQGVTVRVIEKQT 39
                   6799***************************9984 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00064      0.68       1      40 [.       9      47 ..       9      57 .. 0.87
   2 ?   -1.4   0.0       1.5   1.6e+03     102     138 ..     156     200 ..     141     206 .. 0.74
   3 ?   -1.1   0.0       1.3   1.3e+03      92     118 ..     468     491 ..     450     502 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00064
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknG 40
                i+++GaG  G + a +Lak+g +v +i ++  + ++ ++G
  CDO69064.1  9 ILVVGAGPAGLIAALSLAKQGVTVRVIEKQT-AFHVTSRG 47
                89**********************9998877.66666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
                 SSSSCHHHHHTTTS........TTSEEEEEEEE-EEEEEETTEEE CS
        ApbA 102 qNGlgheeelreal........pkprvlggvtthgatregpgevh 138
                  NG ++ ee r a+        +  r l+g t++g t++++g+v 
  CDO69064.1 156 KNGTETVEETRVAYvigsdgakGITRKLMGATFQGQTKDEDGQVW 200
                 677777666666666777776555678999999999999999985 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.3
                 ECTCEEEEEESSSSCHHHHHTTTSTTS CS
        ApbA  92 ldpntvvlllqNGlgheeelrealpkp 118
                 ++   +v+++  G+g +e+++  +++ 
  CDO69064.1 468 IH---AVVVFTTGVGDAEKIDSVIQTV 491
                 33...4788888999999888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3806.77
//
Query:       CDO69065.1  [L=206]
Description: hypothetical protein BN946_scf184992.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1534.96
//
Query:       CDO69066.1  [L=355]
Description: hypothetical protein BN946_scf184992.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-07   30.8   0.1    1.5e-06   27.6   0.1    2.1  2  Tocopherol_cycl  Tocopherol cyclase


Domain annotation for each model (and alignments):
>> Tocopherol_cycl  Tocopherol cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   8.4e-11   1.5e-06     159     221 ..     154     215 ..      89     224 .. 0.80
   2 !    1.2   0.0    0.0091   1.6e+02     288     337 .]     288     347 ..     254     347 .. 0.62

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 8.4e-11
  Tocopherol_cycl 159 gwqilmahglatGwiewngkryeFedapaYsEknWGgafPkkWfWvqcnsFeeepdlaltagg 221
                      +w +  ++++at  ++ ++++ + +   a  EknWG++fP+ W W+q+ s ++e+ l l+ g 
       CDO69066.1 154 NWHVRSTQSVATYDVTHSDATIQGT-GHAHPEKNWGSSFPRGWIWAQAFSADGEHTLCLAGGE 215
                      6888888888888888888877754.56899****************9999999988886654 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.0091
  Tocopherol_cycl 288 lraPtedGlaf.lCrdtlkgklklelwereve.......kkklileats..slaglEvGG 337
                      +  P +dG ++ +C++++++k+ ++  +r +        +++++ ++    + ++lE GG
       CDO69066.1 288 VPGPLKDGHEPdYCHESFQAKVLVSAFRRAWPwtewemvEEAVLGQTVDgtNCGALEFGG 347
                      556788888754899999999999988887766655553333333333222445566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2391.97
//
Query:       CDO69067.1  [L=98]
Description: hypothetical protein BN946_scf184992.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 723.10
//
Query:       CDO69068.1  [L=265]
Description: hypothetical protein BN946_scf184992.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-47  161.9   0.2    2.9e-32  111.6   0.0    2.0  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.041   13.2   0.0    1.1  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   3.3e-36   2.9e-32       2     140 ..      36     172 ..      35     174 .. 0.93
   2 !   48.6   0.0   4.6e-17   4.2e-13     336     382 .]     211     257 ..     210     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 3.3e-36
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-.SEEEEESSHHHHHHHHHHTTS-TTEEE CS
  Cys_Met_Meta_PP   2 TllvhagqekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLegg.eaalavssGmaAiaaailallkaGdei 94 
                      T ++hag+e++++tgav++pi+l++tyk++     + g++kg+eYsRsgnp+r+++e ++aaLe+g + ala+ssG a++ a++l+ l    +i
       CDO69068.1  36 TRAIHAGSEANPETGAVIPPISLSTTYKQD-----AIGKHKGFEYSRSGNPNRNAFETTLAALESGgAYALAFSSGSATT-ATVLQSLGPDAHI 123
                      899***************************.....9****************************87699*******9999.99999999***** PP

                      EEESTSSHHHHHHHHHTHHH.TTCEEEEEST..TSHHHHHHHCCTTEEE CS
  Cys_Met_Meta_PP  95 vvsddlYggtqrllkkvlkk.lgievkfvdt..sdleelekaikentkl 140
                      ++ +d+Yggt+r++++v+++  g++++f d   +d + +++a+++ntk+
       CDO69068.1 124 ISVNDVYGGTFRYMTRVASEnQGLQTTFLDLenADDDTIRAAFRPNTKV 172
                      ***************99987699******993345568*********97 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 4.6e-17
                      EETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 336 elpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqale 382
                      e+pa mth sip+ er+  g+ d+l+RlsvG+E+v+Dl+aD++qale
       CDO69068.1 211 EHPARMTHGSIPPAERALLGIGDNLVRLSVGVEEVEDLLADVEQALE 257
                      69*******************************************96 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.6e-06     0.041      22     113 ..      80     171 ..      64     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-06
                      SHHHHHHHHHHHHH.HT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHT.....T-EEEEE-B-TTTSSB-GGGCGGG-- CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaay.lgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlel.....gakpvfvDvdpdtynidpaaieaait 109
                      +p+ ++FE+ +aa   g ++a+a+ssG+a+ + +L+ lg  p+  +I +   + +t    +++     g+++ f+D +    n d ++i+aa  
       CDO69068.1  80 NPNRNAFETTLAALeSGGAYALAFSSGSATTATVLQSLG--PDAHIISVNDVYGGTFRYMTRVasenqGLQTTFLDLE----NADDDTIRAAFR 167
                      78999********8356******************9876..5588887776666666555443222227777777777....677777777777 PP

                      TTEE CS
  DegT_DnrJ_EryC1 110 ertk 113
                      ++tk
       CDO69068.1 168 PNTK 171
                      7776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1735.14
//
Query:       CDO69069.1  [L=245]
Description: Benzoquinone reductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-06   28.4   0.0    1.6e-06   28.0   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase
    0.00046   20.0   0.0    0.00063   19.5   0.0    1.1  1  Flavodoxin_2  Flavodoxin-like fold
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.86    9.8   0.0    2.0  2  Flavodoxin_1  Flavodoxin


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.6e-10   1.6e-06      16     129 ..      59     169 ..      46     191 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.6e-10
                 HHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHTCGGSHHH.HHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT-EEE CS
     FMN_red  16 trklaewaaealkeagaevelidladlilpcalcdkdlesegqtsddv.aellekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgKpva 113
                   klae +++ + +ag ++++ ++ +  lp++++ k +  + +++++    +   + + d++i++ P+  gs++++ K+++D ++ ++ + +l gK++ 
  CDO69069.1  59 IAKLAESVKAGITAAGGQATIYQIPET-LPQDILEKLH--A-PPKPAYpVIAPTDLPNFDGFIFGIPTRYGSFPAQWKSFWDATGGIWAQGALFGKYAS 153
                 567777777777777777777777776.4432444222..1.22222202333568899***************************************9 PP

                 EEEE-SSTTTTHHHHH CS
     FMN_red 114 lvavgggrrgglraee 129
                 +++  ++  gg+++++
  CDO69069.1 154 IFVSTASPGGGQETTA 169
                 9977778888877653 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.1e-07   0.00063      19     152 ..      61     171 ..      48     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.1e-07
                   CHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHCC.HHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTTSCEET CS
  Flavodoxin_2  19 alaqafvealekagphevtvrdLyad.flpvlttrdlaak.layeekpadveseqiekllaadaivlqfPlwwfgvPailKgwiDrvltagfafyte 113
                   +la+++ +++++ag  + t+  + ++ +     + d+ +k +a+++ pa        +l + d  +++ P  + ++Pa+ K + D     g      
    CDO69069.1  61 KLAESVKAGITAAG-GQATIYQIPETlP-----Q-DILEKlHAPPK-PAYPVIAP-TDLPNFDGFIFGIPTRYGSFPAQWKSFWDAT--GGI-W--- 142
                   78899999999999.8999999999733.....3.33334478887.86666666.7****************************95..555.3... PP

                   TCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HH CS
  Flavodoxin_2 114 eggegrgggLkgkkalvivttGgpeesyqerglegaamd 152
                         +g+L gk a + v+t +p+      g+e  a++
    CDO69069.1 143 -----AQGALFGKYASIFVSTASPGG-----GQETTALN 171
                   .....248999**********99932.....23333333 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00014      0.86       1      43 [.      50      90 ..      50      97 .. 0.85
   2 ?    0.4   0.0      0.11   6.7e+02      41      72 ..     108     137 ..     100     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00014
                  EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGG CS
  Flavodoxin_1  1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslsei 43
                  i+ +S +G+  klA++++ ++ ++g +a+++++ +    +++i
    CDO69069.1 50 IIIYSLYGHIAKLAESVKAGITAAGGQATIYQIPETL--PQDI 90
                  566899*************************999877..4455 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
                   GGGGTHSEEEEEEEEETTTBEEGGGHHHHHHH CS
  Flavodoxin_1  41 seieeealllvvtsTfgnGdppengesffqdl 72 
                    ++++ +  +++++T + G++p + + +f+d 
    CDO69069.1 108 TDLPNFDGFIFGIPTRY-GSFPAQWK-SFWDA 137
                   57777788888888766.88887776.44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1773.76
//
Query:       CDO69070.1  [L=946]
Description: hypothetical protein BN946_scf184992.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-70  236.3   1.2    1.1e-45  156.2   0.3    4.0  4  COG7           Golgi complex component 7 (COG7)
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.42   10.5   0.0    2.0  1  ETC_C1_NDUFA5  ETC complex I subunit conserved region
       0.14   11.1   1.5       0.27   10.1   1.5    1.4  1  Vps53_N        Vps53-like, N-terminal


Domain annotation for each model (and alignments):
>> COG7  Golgi complex component 7 (COG7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.3   1.9e-49   1.1e-45       6     335 ..      37     381 ..      33     388 .. 0.91
   2 !   51.6   0.0   8.1e-18   4.9e-14     350     501 ..     435     596 ..     429     632 .. 0.86
   3 !    9.9   0.0   3.2e-05      0.19     563     657 ..     680     782 ..     667     787 .. 0.76
   4 !   13.9   0.0     2e-06     0.012     692     729 ..     860     897 ..     840     929 .. 0.84

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 1.9e-49
        COG7   6 seddFdvkdWvNasfkarqk......edakekadafvsslvmkLQlyvqevnaslEessgqvlknvPrvirdvealrqeassLkekmaqvkqdik.kve 97 
                 +ed+ dv++W+N+    +++       +a  + d  vs lv  L +++++  a +++  +++  +  r + d + +r+ a sL++ ++ v+ + k  + 
  CDO69070.1  37 LEDHPDVVSWINDILGISEEpsdverSGALTELDRRVSHLVGTLEIASEDTSAQVDRLIEDISRSASRLTYDLHFMRESALSLQGTLHSVEGKSKsSLA 135
                 47888*******9876544311111145666777799999999999999999999999999999999***********************988762689 PP

        COG7  98 qdtadcmaaLerldkvkqrlqaakesLqeadgwgkLsaeledlferndikvisekLislqkslsalvelpeyaerrkqlEalknRLEAlvsPsvvqalt 196
                  dt   +++L  ld vk  ++a++e L+ea+ w++L +++  l++++  ++++e+L +  ks+++ +++pey  rr+ +  l+n LEA  s  +v+a++
  CDO69070.1 136 ADTDAALEKLHYLDLVKRNMEATREVLREAESWSTLESDVTSLLAEKSYEKAAERLSEASKSMAVFENTPEYDSRRTLMVSLQNQLEASLSSALVAAVN 234
                 9************************************************************************************************** PP

        COG7 197 sqdvdqakkyvkifeeIdRlpqLkqyYrkvrkkalkeqWeellekqes.........tsldsvLtefydellealeqqlkWcsqvFkedaelvlkllve 286
                 sqdv+++++y  if++I+R  + + yY+  r+ +l+eqW+++  ++           + +  +L  fy++ l++l+++   +  +F+++  +   l+  
  CDO69070.1 235 SQDVAVCRNYFSIFRNIQRESEFRNYYYGSRRGPLVEQWQSARLRDCDsdtaadslsLTFPAFLPIFYQSFLSILQTERTSVPAIFPDPRPTLSALITS 333
                 ****************************************997666335778999999999************************************** PP

        COG7 287 tlgaLqpsresvlsealkravpetkleaLlelsnvtgsfakalekllae 335
                 tl+aLqps++ +l+ a+    + t l +L+  + +t +fa+a +k++++
  CDO69070.1 334 TLSALQPSFSERLE-AMASYYGSTALVQLIAAYRATEDFANATDKIMEK 381
                 ************96.6667777779*****************9999876 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 8.1e-18
        COG7 350 kavfspfesfkqkYgklEesqlssqiealklega.evsdtVreleesvakvvklleeAveRCikiTqglalceLikvLkslllkyvekfqevlkslrlk 447
                 + +f+pf  f+  Y +lE   l+  ++   + g    +d  r l e    v+  +eeAv RC+++T+g ++ +Li++L+ l+  + +  +    + r  
  CDO69070.1 435 QELFEPFVDFQVDYSRLETRYLDDALKSALSGGLrGRVDHARLLRERAVDVFGAAEEAVARCMAFTHGYGALGLIHALDRLFSDFADVSKVEILQRRSG 533
                 569**********************9876555434789********************************************98866555444444555 PP

        COG7 448 cksdsiaadslsk.........edWsllQlslqilqvlgellqqleefEqklaarlltlaskl 501
                 ++ +s+aa +  +         edW+ +Q  l+ l+++  ll ++  +E kl+++l+++ + l
  CDO69070.1 534 QGGQSLAASASGEelldldytaEDWADIQALLHFLEAVRALLDRIVALEGKLRSTLVQVSTTL 596
                 6666555544333588889999**********************************9987766 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 3.2e-05
        COG7 563 sllskasqalkrlaeevhdlvldvllskikqqlkevsrleswss..........agvgetladdLPdfSlaPqeyitqigqYLltLPqhLEPlllsesa 651
                 sll  a++a+ +la++ ++   d++ls++++ l+       ws           +g       ++P+fSl P + + ++++ Ll LP   E ++     
  CDO69070.1 680 SLLVGARNAVSELAKTCQQALQDTILSPLHKYLASYASSSLWSApgdpkgkrglTGGSALSEVQVPTFSLSPSSTMQHVAEGLLNLPRLFEVYADDD-- 776
                 5777788999999999999999999999999999998888887622222222223344556789************************999666554.. PP

        COG7 652 aLklvl 657
                 aL + l
  CDO69070.1 777 ALAFSL 782
                 666555 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2e-06
        COG7 692 alYvdqilqIkslsasgakQLavDIeYlsnVleelgls 729
                  l ++ +  I+ l++ ga QLa D+ Ylsn++ +l ++
  CDO69070.1 860 RLTTEVLPRITKLTPAGAAQLASDLGYLSNIVMALNVE 897
                 566789999***********************999875 PP

>> ETC_C1_NDUFA5  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     7e-05      0.42       6      24 ..     321     339 ..     318     342 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7e-05
  ETC_C1_NDUFA5   6 pnPreaLialytktLkkLk 24 
                    p+Pr++L+al t+tL++L+
     CDO69070.1 321 PDPRPTLSALITSTLSALQ 339
                    89***************97 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   4.6e-05      0.27      42     183 ..      92     235 ..      61     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.6e-05
     Vps53_N  42 ksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseem.vkeitrdIkqLDiAKknlttsiTtlkrLkmLvtavesleallskrsykeivsl 139
                   + ++ + ++ +   +l+ + ++  +l   ++++  k+++s +       + + +LD+ K+n+ ++  +l++ +   t    +  ll ++sy+++++ 
  CDO69070.1  92 DRLIEDISRSASRLTYDLHFMRESALSLQGTLHSVEGKSKSSLAAdTDAALEKLHYLDLVKRNMEATREVLREAESWSTLESDVTSLLAEKSYEKAAER 190
                 44455555556666778999999999999******999999976614556689***********************9999999**************** PP

     Vps53_N 140 lqavlqllnhFekYkdvekIaeLsesis.klkkslksqiledfke 183
                 l    + + +Fe+  + +  + L  s++ +l +sl s +++  ++
  CDO69070.1 191 LSEASKSMAVFENTPEYDSRRTLMVSLQnQLEASLSSALVAAVNS 235
                 *************99999999999998525778888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6932.55
//
Query:       CDO69071.1  [L=269]
Description: hypothetical protein BN946_scf184992.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-29  100.5   2.6    2.8e-27   95.6   0.4    2.3  2  eIF3g        Eukaryotic translation initiation factor 3 subun
    9.7e-19   67.0   0.1    1.6e-18   66.2   0.1    1.3  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    0.00073   19.5   0.3       0.12   12.4   0.0    2.3  2  RRM_3        RNA binding motif
  ------ inclusion threshold ------
      0.034   14.1   0.0      0.058   13.4   0.0    1.3  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
      0.076   12.6   0.0       0.12   12.0   0.0    1.3  1  RRM_5        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
        0.1   12.4   0.0       0.28   11.1   0.0    1.6  2  OAM_alpha    D-ornithine 4,5-aminomutase alpha-subunit
       0.22   11.7   0.3        5.1    7.3   0.2    2.2  2  PHM7_cyt     Cytosolic domain of 10TM putative phosphate tran


Domain annotation for each model (and alignments):
>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2    0.0018       4.7       5      25 ..      26      46 ..      22      46 .. 0.87
   2 !   95.6   0.4   1.1e-30   2.8e-27      47     124 ..      44     124 ..      42     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0018
       eIF3g  5 iededgiktvieykinedgkk 25
                + de+gi+t++ey in++++k
  CDO69071.1 26 YVDENGIRTIVEYIINDEERK 46
                5689*************9876 PP

  == domain 2  score: 95.6 bits;  conditional E-value: 1.1e-30
       eIF3g  47 eRkkwaKfGdekgdkpgpnsatttvgeevelkl...eeekeeekeeeekekaklkkkekklvkCriCkgdHfTskCPykdt 124
                 eRk+waKfG+ekg+kpgp++atttvge+v+lkl   ++++e e ++e++ ka+l+k+ +  v+Cr+CkgdHfT+kCPykd 
  CDO69071.1  44 ERKTWAKFGKEKGNKPGPDRATTTVGENVYLKLsagNKSSEPEPSAEQSVKANLAKAGAGKVVCRLCKGDHFTAKCPYKDS 124
                 8********************************7653333337888999999999785556******************97 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1   6.4e-22   1.6e-18       1      66 [.     189     255 ..     189     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 6.4e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklgg 66 
                 l V+n+++d+ e++L++lF+ fG++ ++ + rd etg  kgfafV Fe+k +A+kA+e+++g+ +++
  CDO69071.1 189 LRVTNISEDTEENDLRDLFGVFGRVARVYVGRDrETGAGKGFAFVSFEDKAAAQKAMEKMHGRGYDN 255
                 679***********************************************************98876 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0098        25      71      93 ..      36      58 ..      13      65 .. 0.84
   2 !   12.4   0.0   4.8e-05      0.12       6      58 ..     191     249 ..     188     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0098
                EEE--HHHHHHHHHHHHHHHHHC CS
       RRM_3 71 lelLeGeeEkeywkkiledkqkk 93
                +e +  +eE++ w k+ ++k +k
  CDO69071.1 36 VEYIINDEERKTWAKFGKEKGNK 58
                567889************99887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.8e-05
                 EEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEE......EEESSHHHHHHHHHHHH CS
       RRM_3   6 lsGlnkelsredikellsklgevayvdyekgdkege......vrFkedeeakkalekat 58 
                 ++ +++++  +d+++l+  +g va v + ++ ++g+      v F+++ +a+ka+ek+ 
  CDO69071.1 191 VTNISEDTEENDLRDLFGVFGRVARVYVGRDRETGAgkgfafVSFEDKAAAQKAMEKMH 249
                 566789999**************966555555554333334499************986 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.058      14      52 ..     200     244 ..     196     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
  Nup35_RRM_2  14 ielVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekA 52 
                  +++ ++ F +fG++ + yv+       ++ +++v fe++ +a+kA
   CDO69071.1 200 ENDLRDLFGVFGRVARVYVGrdretgAGKGFAFVSFEDKAAAQKA 244
                  577888899*****************889***************9 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.7e-05      0.12      27      99 ..     187     263 ..     161     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.7e-05
       RRM_5  27 sVllVyglepdkvnldklFnlfclYgnvervkflktk.....ketalvqmgdasaveravqHLnnaklfgkrlevalS 99 
                 + l V+++ +d+   + l  lf+++g v+rv + + +     k+ a+v   d  a+++a++ + +    +  l+++ S
  CDO69071.1 187 PTLRVTNISEDTE-ENDLRDLFGVFGRVARVYVGRDRetgagKGFAFVSFEDKAAAQKAMEKMHGRGYDNLILNIQWS 263
                 5667788877764.567999************99877333336889*****************997643336666655 PP

>> OAM_alpha  D-ornithine 4,5-aminomutase alpha-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.28      54      93 ..      76     115 ..      60     124 .. 0.80
   2 ?   -2.4   0.0       1.7   4.4e+03      58      86 ..     232     259 ..     225     264 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                 HHTT--HHHHHHHHHHHHHTTGGGG-HHHHHHHHHHHTT- CS
   OAM_alpha  54 LrmGlssleakaivekvlekgllgkGaGhvvyrlakekni 93 
                 L  G +s e +   e+ ++++l   GaG+vv rl+k ++ 
  CDO69071.1  76 LSAGNKSSEPEPSAEQSVKANLAKAGAGKVVCRLCKGDHF 115
                 3458899999999*********************998765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                 --HHHHHHHHHHHHHTTGGGG-HHHHHHH CS
   OAM_alpha  58 lssleakaivekvlekgllgkGaGhvvyr 86 
                 + s+e ka  +k++ek + g+G  +++++
  CDO69071.1 232 FVSFEDKAAAQKAMEK-MHGRGYDNLILN 259
                 5567777777777764.566776666665 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.049   1.2e+02       3      25 ..     188     209 ..     187     224 .. 0.80
   2 ?    7.3   0.2     0.002       5.1     115     140 ..     221     246 ..     212     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.049
    PHM7_cyt   3 TvlvtgiPkelrseeklkeffee 25 
                 T++vt+i ++++ e++l+++f  
  CDO69071.1 188 TLRVTNISEDTE-ENDLRDLFGV 209
                 99*********9.7789999965 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.002
    PHM7_cyt 115 ekvkkkplgaaFvtfesersaaavak 140
                 ++++   +g aFv+fe++ +a+++++
  CDO69071.1 221 DRETGAGKGFAFVSFEDKAAAQKAME 246
                 4555556899************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1898.56
//
Query:       CDO69072.1  [L=303]
Description: hypothetical protein BN946_scf184992.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2226.74
//
Query:       CDO69073.1  [L=329]
Description: hypothetical protein BN946_scf184992.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   10.7   0.1       0.24   10.7   0.1    2.0  2  TraE      TraE protein


Domain annotation for each model (and alignments):
>> TraE  TraE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4      0.13   2.3e+03      44      44 ..      44      44 ..      10      67 .. 0.54
   2 ?   10.7   0.1   1.4e-05      0.24      19      53 ..     100     134 ..      93     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.13
        TraE 44 k 44
                +
  CDO69073.1 44 T 44
                1 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 1.4e-05
        TraE  19 llalllavllaanlllgslilratrkqrvvlvPpe 53 
                 ++a+ ++  l++ +ll++ ++ +++ +rvv++P +
  CDO69073.1 100 GMAACVVCNLMSDALLTYRCYVIWNSRRVVILPCM 134
                 789999***************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2373.64
//
Query:       CDO69074.1  [L=173]
Description: hypothetical protein BN946_scf184992.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-12   47.1   0.0    2.8e-12   46.7   0.0    1.2  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
     0.0024   17.6   0.0      0.016   14.9   0.0    2.0  1  ubiquitin    Ubiquitin family


Domain annotation for each model (and alignments):
>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.1e-16   2.8e-12       2      68 ..     104     170 ..     103     173 .] 0.95

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.1e-16
                  EEEEEEEETTS-EEEEEEEETT-BHHHHHHHHHHHS-TT-SS.S--SCCCEEEEETTEEE-TTSBCCC CS
  Rad60-SLD_2   2 aielkfrlvdGsDigpvkfsdaatvaelkekviaqWPkdkee.kpksvndlklilaGkiLennktlke 68 
                  +++l f+lv+G     ++f++++t+  +ke v++ WP+d++   p  + +l++++ GkiL++   l +
   CDO69074.1 104 QVSLTFLLVSGR-RRTMSFDPETTIGRVKELVWNAWPNDWQDeRPPAPSYLRILYLGKILQDEDSLDS 170
                  68999*******.****************************99*******************998876 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-06     0.016       7      55 ..     113     169 ..     107     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-06
                 TSEEEEEEEETTSBHHHHHHHHHHHHT........SSGGGEEEEETTEEE-TTSBHG CS
   ubiquitin   7 dgkkitleveesdtveelKekiaekeg........ipaeqqrLiysGkvLedertle 55 
                 +g+  t+++++++t+  +Ke +              +++ +r++y Gk+L+de +l 
  CDO69074.1 113 SGRRRTMSFDPETTIGRVKELVWNAWPndwqderpPAPSYLRILYLGKILQDEDSLD 169
                 678889999**********9995443223444443677778************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1281.76
//
Query:       CDO69075.1  [L=597]
Description: hypothetical protein BN946_scf184992.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-235  781.7   0.3     3e-235  781.4   0.3    1.1  1  PGI       Phosphoglucose isomerase


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  781.4   0.3  1.7e-239    3e-235       1     486 []     104     588 ..     104     588 .. 0.99

  Alignments for each domain:
  == domain 1  score: 781.4 bits;  conditional E-value: 1.7e-239
                 E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B--EE CS
         PGI   1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkaitdv 99 
                 d+skn ++++il++l++l++ea++++ r+++faGe+in+ e+ravlhvalrn  +  i   G   v ev +vl++mkefse+vrsG+wkG+tgk+i+ +
  CDO69075.1 104 DFSKNLITEHILSTLLDLVREADVETWRDKMFAGEHINTSEDRAVLHVALRNFDEFKINKAG---VDEVGKVLAHMKEFSEAVRSGAWKGYTGKTINTI 199
                 9******************************************************8887666...568999**************************** PP

                 EEE--GGGTHHHHHHHHHTGGG-TT.-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--GGGGGGTEEEESS-HH CS
         PGI 100 vniGiGGsdlGPvlvtealkkeser.lkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalkedsavakhfvalstnae 197
                 vniGiGGsdlGPv+vtealk++++r l+ +fvsn+dgth+ae+l+  dpe+tlfi+asktftt+et++naesa++w+l ++k++ +vakhfvalstn++
  CDO69075.1 200 VNIGIGGSDLGPVMVTEALKPYAKRdLTAHFVSNIDGTHLAETLRLCDPERTLFIIASKTFTTQETITNAESARDWFLATAKDKAHVAKHFVALSTNTK 298
                 ************************9999*********************************************************************** PP

                 HHHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGGTTHHH CS
         PGI 198 kveefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqylerlaa 296
                  v  fGi e+nmf+fwdwvGGryslwsaiGls+al iGf+nfe+ll+Ga+a+dkhf++aple+n+Pvlla++g+wy++f+ga+t+a+lpydqyl+r+a 
  CDO69075.1 299 AVTAFGIAEQNMFQFWDWVGGRYSLWSAIGLSIALVIGFDNFEQLLRGAHAMDKHFKTAPLEQNLPVLLAVIGIWYNDFYGAQTHALLPYDQYLHRFAD 397
                 *************************************************************************************************** PP

                 HHHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-.GGGGHHHHHHHHHHHHHHHHHHH-B-HHHHHHHH CS
         PGI 297 ylqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqn.ieiadhhkillsnffaqtealmvGkseeevkkel 394
                 y+qq+dmesnGksvtkdg +v+++tg+ii+G agtngqh+fyql+hqGtkliP+df+a+  s+n i  ++hh+illsnffaq+eal++Gk+eeev+kel
  CDO69075.1 398 YFQQGDMESNGKSVTKDGRRVNYQTGPIIWGAAGTNGQHSFYQLVHQGTKLIPADFLAPTTSHNpIDHSKHHRILLSNFFAQPEALAFGKTEEEVRKEL 496
                 ****************************************************************99********************************* PP

                 HHTHHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS-HHHHHHH CS
         PGI 395 akakveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdfdsstngli 486
                   ++ ++lv  k feGnrPsnsi++  ltpa+lGalialyehki++qGv+wginsfdq GvelGk+lak+ilk+l++ e v+++dsst gli
  CDO69075.1 497 GPNASNALVKSKIFEGNRPSNSIMFPLLTPATLGALIALYEHKIFTQGVVWGINSFDQMGVELGKVLAKNILKQLDKPEDVTGHDSSTTGLI 588
                 999***************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4341.17
//
Query:       CDO69076.1  [L=855]
Description: hypothetical protein BN946_scf184992.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-128  427.8   0.0   5.7e-128  427.3   0.0    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    6.8e-09   35.4   0.1    2.2e-08   33.8   0.1    1.8  1  DUF1965          Domain of unknown function (DUF1965)
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.022   15.0   0.0    1.4  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.3   0.0  9.5e-132  5.7e-128       6     408 ..     376     782 ..     372     784 .. 0.95

  Alignments for each domain:
  == domain 1  score: 427.3 bits;  conditional E-value: 9.5e-132
                    TT---SEEET.TTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTSS-TT-EE CS
  Cu_amine_oxid   6 peGpsfkvde.gnlvewqkWsfrvgfnrreGlvlhdvrykgrrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcDClgeity 100
                      G +f+vd+  ++v+w++W +++gf+r++Gl+l+d+r+kg+ri+y+l+ +e++++Y++++p+++++a++D ++ g+G++++++ +g+DC++e+ y
     CDO69076.1 376 FAGLRFRVDRaTQYVSWMGWGMYLGFDRDMGLSLWDLRFKGERIIYELAPQEAIAQYAGNDPMQTTTAWLDRFF-GMGSAVRDMIPGYDCPHEAVY 470
                    6799****999***************************************************************.********************* PP

                    EEEEEEE..TEEEEEEEEEEEEEEE-S.-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T.....G CS
  Cu_amine_oxid 101 ldavladssgepvtiknaiCifEedag.ilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaalaeeeesk 195
                    l+a++++  +  +++++aiCifE+da  ++++Ht +++g++++tr ++Lv+r+++tvgNYdY+fdyiF+ dG+iev+++a+G+l+  ++++++e  
     CDO69076.1 471 LPATTHN-FEGSIVRSRAICIFEHDAArPITRHTGYSDGEFGATRGYQLVIRSVSTVGNYDYLFDYIFQIDGTIEVRLSASGYLQGGYWEPAQE-G 564
                    *******.667788899********************99***************************************************9766.8 PP

                    G--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE......-T...TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG.-EEEEEEEEEEE CS
  Cu_amine_oxid 196 ygtrvapgvlasiHqHlfslrvDldidgeknsvveeel......vp.eepelgeenpagnafkvektvletekeaaldldpek.nrvlkivnenkk 283
                    ygt +++++++s+H+H+++++vDld++g++ns++ +++      +p +e+++g    +  + k+ k+++ete++a l++ p++ +  +++vn++ k
     CDO69076.1 565 YGTAIRDTTMGSLHDHVINYKVDLDVAGTENSLLFTSTtqetitQPwFEDDWG---AEVIQQKISKRYIETEDDALLKF-PANlQGGYSLVNKDAK 656
                    *********************************99999888887776556666...5999*******************.7777************ PP

                    -TTS-EEEEEEE-.S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTG.G-TTS.-.--GGGG-.S--B-SSEEEEEEEEEEEEE- CS
  Cu_amine_oxid 284 nklgepvgYklvp.ssaasqlllakesslvakraefakhhlwvtkykdselyaageyn.nqskgep.vglakwvednesieneDlVvWvtlGltHv 376
                    n++g p+gY ++p  s+++  +++  s+++ ++a++a+++l+v+k+k++e++++ ++n n + + p  +++k++ d+e+i++eDlV+Wv++G++H+
     CDO69076.1 657 NRWGIPRGYAIHPgYSPIH--NTVVGSKRLLNNANWARYNLAVSKRKETEPSSSCQWNlNLPGD-PmIDFHKFF-DGENITQEDLVAWVNVGMHHL 748
                    *************878788..9999*********************************777766.89*******.********************* PP

                    --GGGSS..-TTTSEEEEEEEEES-SSS-GGGG- CS
  Cu_amine_oxid 377 praeDfP..vmpvetvsflLkPvnFfdenpaldv 408
                    p+aeD P   ++ + +sf+L+P n+fde+ ++++
     CDO69076.1 749 PQAEDSPntRTNLAASSFFLTPLNYFDEDVSMES 782
                    *******9889999****************9975 PP

>> DUF1965  Domain of unknown function (DUF1965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   3.6e-12   2.2e-08       5      58 ..     290     343 ..     288     355 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 3.6e-12
                 -EEEEEEEEE--SS-GGG-EEEEEEETTEEESSHHHHHHHHTSTT--------- CS
     DUF1965   5 lplGLylklDvtGRdpskWkvlGwlyngifYetteeFRaaikspgfkklgpnvd 58 
                  p +++  +D++G dps+Wk+l  +yn + +++t++F aa+   + k+ +   d
  CDO69076.1 290 HPVNFFQYVDFSGTDPSQWKLLKLVYNHQVFNSTDAFLAAYHDGTLKRHPDRPD 343
                 68899999**********************************999888776555 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.7e-06     0.022      25      83 ..     137     197 ..     127     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-06
                      -TTSEEEEEEEEE---HHHHHHHHHCH---..S-EEEEEEEEETSSSSEEEEEEEEEECCS CS
  Cu_amine_oxidN2  25 tskknsffeveLeePdKkavlqflekgepp..ppRkAsvvilfGkqtkelvvdLatgklls 83 
                       +++n +  ++   P+Kk ++++l+  e    p R A+v i  G+ + + v+d  +g+l+ 
       CDO69076.1 137 ILSDNFIYHIDAFRPAKKDAVAYLDNPEAVspPERFARVTIHHGAADDPHVMDYLVGPLPV 197
                      56788888999999*********988775455*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6357.35
//
Query:       CDO69077.1  [L=564]
Description: hypothetical protein BN946_scf184992.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-34  119.2   0.0      3e-34  118.4   0.0    1.4  1  Pro-kuma_activ  Pro-kumamolisin, activation domain
    3.5e-06   26.5   0.0    5.5e-06   25.9   0.0    1.2  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   3.3e-38     3e-34       2     142 .]      44     184 ..      43     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 3.3e-38
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaq 96 
                     g+t+ g+a+++ +l++r++L++++ + + d+l  vsdp+sp yg++l+++ev++ +ap+++a++ V +wL+++g++a+  s+ ++w+ ++++v++
      CDO69077.1  44 GFTEIGPAPPEATLNLRLALAESDPNGVVDALYSVSDPDSPTYGQYLNKDEVERFVAPKPAAVAVVNAWLKENGLTAKPLSPAGDWLGIDVPVSK 138
                     678899***************************************************************************************** PP

  Pro-kuma_activ  97 verllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     ++++++t+f  ++h +++   +r+  yslPe+l+ ++d +hpt +f
      CDO69077.1 139 ANTMFNTNFTVFRHVDTGVETIRTLAYSLPESLQGHIDVVHPTVSF 184
                     *******************************************987 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.1e-10   5.5e-06     122     264 ..     341     505 ..     296     530 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.1e-10
                   -SEEEE-EE...SCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HH.EEE-TTCEECTTTSTTCEEEEEES..........TTSSB-TT-- CS
                   xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx RF
  Peptidase_S8 122 vdvinmslg...estslpktgrsiealainravnkkgvlvviSaGNngktgs.slqagspvgtpstsknvitvgayt..........tegkiapfSs 204
                   ++v+  s+g    s s   t++ ++  a+ ++   +g+ +  ++G +g+    ++ +  +  +ps++  +++vg+++          + g  + + s
    CDO69077.1 341 PQVLTTSYGlqeSSLSFALTDKLCR--AYAQLG-ARGTTILYASGDSGPGCAdDVGDAFEPTFPSNCPFITSVGGTQgfspeeawtgSSGGFSNYFS 434
                   4477778886444444455555555..888888.78************865559999999999*********************9996666666666 PP

                   B-TT.......-EEEE-S-..CCCCCCCCCHHHTTTHH.........EEEE-SHHHCHHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 205 rGpssdgklkpdivapGgn..ivstwsrqsnnsaglss.........yqsmsGTSmAsPnaagaaAlllsa 264
                   r + ++ ++ p i a G++  +  ++s ++ ++  ++          +  + GTS++sP +a+++Al+ ++
    CDO69077.1 435 RPSYQAAAVSPYIKAHGSDnkGRFNASGRAFPDIASKAdeffiyangFYPVFGTSASSPTVASIVALINDR 505
                   6666668999999999999676666666666666555599*******889*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.52
# Mc/sec: 3279.82
//
Query:       CDO69078.1  [L=265]
Description: hypothetical protein BN946_scf184992.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-11   41.6   0.0    2.6e-10   40.2   0.0    1.7  1  Epimerase       NAD dependent epimerase/dehydratase family
    2.3e-10   40.1   0.0    4.9e-10   39.0   0.0    1.5  1  NAD_binding_4   Male sterility protein
    5.6e-07   29.3   0.2      1e-05   25.1   0.2    2.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    1.3e-05   24.3   0.0     0.0003   19.9   0.0    2.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    2.5e-05   24.2   0.1     0.0015   18.5   0.0    2.2  2  NAD_binding_10  NAD(P)H-binding
     0.0034   17.0   0.0     0.0042   16.7   0.0    1.2  1  NmrA            NmrA-like family
  ------ inclusion threshold ------
      0.044   13.2   0.1      0.092   12.2   0.1    1.5  1  adh_short       short chain dehydrogenase
       0.12   12.3   0.3        1.4    8.8   0.3    2.1  1  KR              KR domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.2e-13   2.6e-10       1     176 [.       9     230 ..       9     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.2e-13
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............................EEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl............................elveldltdrsalerlfkeeqpdavihl 71 
                 +lVtGa+G+i   +vk+ll++g  v g  r  s+  +  l++l                            +  e    ++ a++++++  +++a+ih 
  CDO69078.1   9 VLVTGANGYIAVWIVKKLLDAGFAVRGTVRSASKAMH--LRNLfkaagekfelvivddivevrvpftfvhhSESERPCSQPGAFDEYVQ--DVTAIIHN 103
                 79************************99999555444..44445589*****************8864433333344444447888888..89****** PP

                 -S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCT..EEEEEEEGGGGTSCSSSS............BSTCSTTS--....--SSHHHHHHHHHHHH CS
   Epimerase  72 Aavggvaassedpadfieknlqgtlnlleaarkagvk..rllflsSsevYGkdaeqp............keettltgpl....kpnspYaaaKlagekl 152
                 A    v+ ++ +p ++i   lqgtl +le ar++g    r++ lsS+++  ++++ p            +ee+++  +      p   Y a+K+++e+ 
  CDO69078.1 104 A--TPVHLNAAEPDEMIIPALQGTLGILESARAHGTAlqRVVVLSSTATVWRSNTDPsktldldetcwnDEEVAQCREKgraaTPLAMYRASKTLAERA 200
                 5..57778889***********************87777*****999999855554444455545556555555443335558999************* PP

                 HHHHHHHH.T.....-EEEEEEESEEESTT CS
   Epimerase 153 veayaaqy.g.....lnaiilrlfnlyGpr 176
                 ++++  +y g     ++ ++l ++ ++Gp 
  CDO69078.1 201 AWEFIGKYsGeggvgWDLVTLSPSFVVGPC 230
                 ****99995588888888888888888885 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.2e-13   4.9e-10       1     209 [.      11     236 ..      11     263 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.2e-13
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHH.HHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGG.GG--HHHHHHHHHH--EEEE- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksge.saeeRleeelekkelfsallkelaerikvveGDlsepr.lGLseedlqelaeevdviihs 94 
                    +TGa G+++  +++kLL+      +   vR+ s++ + ++ ++++ ek+el  +  + ++ r+ +     se++    ++ +++e ++ v++iih+
     CDO69078.1  11 VTGANGYIAVWIVKKLLDAGF--AVRGTVRSASKAmHLRNLFKAAGEKFELVIVD-DIVEVRVPFTFVHHSESErPCSQPGAFDEYVQDVTAIIHN 103
                    7****************9987..79999**6555416666667777888888777.47888887776666655514557789************** PP

                    -SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--...-EEEEEEGGGTTS-TTT--SSS-H..........HHH--EEEETTTCCCHHHHHHHHH CS
  NAD_binding_4  95 aAtvnfde.pykellrvNveGtrevlelakklkkl..kvllhvSTayvngeregeveekvyeege....keekldederaklkglpntYeqsKala 183
                    a  v++++ + +e++ + ++Gt  +le a++      +v++  STa+v + +++    k+++  e    +ee ++  e+ + +     Y  sK la
     CDO69078.1 104 ATPVHLNAaEPDEMIIPALQGTLGILESARAHGTAlqRVVVLSSTATVWRSNTDPS--KTLDLDEtcwnDEEVAQCREKGRAATPLAMYRASKTLA 197
                    *******95667899**************954433336888888888888888664..33333334575666666666777777777********* PP

                    HHHHHH....HHHHH---..EEEEEE-EEE-.......- CS
  NAD_binding_4 184 Eklvre....arrrsglp..vvivRpsiitg.......e 209
                    E+   e    ++ ++g+   +v + ps ++g       +
     CDO69078.1 198 ERAAWEfigkYSGEGGVGwdLVTLSPSFVVGpclhevdK 236
                    *97655000033333222225666666666666666543 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   4.6e-09     1e-05       1     133 [.      10     152 ..      10     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.6e-09
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-.TTH........HHHHCTTT...TTGCCEEEEE--TT-HHHHH.HHHHHH..T-SEEEE--S CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssf.ntg........riehlakdpkeeleenlklhkgDltDsssle.rllaev..qpdevynLAA 84 
                    L+TG +G+i  +++++Ll+ g+ v g+vr +s+  +++        + e +  d+ +e++  ++++++  +++   +  +++e+  +++++++ A 
     CDO69078.1  10 LVTGANGYIAVWIVKKLLDAGFAVRGTVRSASKAmHLRnlfkaageKFELVIVDDIVEVRVPFTFVHHSESERPCSQpGAFDEYvqDVTAIIHNAT 105
                    9***************************98876412331111111133344455556666678888888777654431577776666799***998 PP

                    ---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG CS
  GDP_Man_Dehyd  85 qshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvY 133
                      h +    +P++++   + Gtl +Le +ra+g + +  ++ +St++v+
     CDO69078.1 106 PVHLN--AAEPDEMIIPALQGTLGILESARAHGTALQRVVVLSSTATVW 152
                    76665..589***********************9988888999999886 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-07    0.0003       1     159 [.      10     203 ..      10     236 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-07
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee..lkevrvlD.................lrespelleelskvnvkk..............viegDvtdkdkleealeg 66 
                 +vtG+ G++   +vk+L++++     +vr++                  l            v v++                e    +    +e +++
  CDO69078.1  10 LVTGANGYIAVWIVKKLLDAGFavRGTVRSASkamhlrnlfkaagekfeL------------VIVDDivevrvpftfvhhsESERPCSQPGAFDEYVQD 96 
                 68999999999999999998865445788887666655555444432221............2222222222222431111223335566789999*** PP

   3Beta_HSD  67 vdvvihlaslvdvagkltedeimkvnvkGTrnvleacvkagv...rvlvYtSsaevvgpnslgeeilngdEeleyesl............hqdaypesK 150
                 v ++ih a+ v +    + de+    ++GT  +le+++ +g    rv+v  S+a v   n+   + l+ dE+   ++             + ++y  sK
  CDO69078.1  97 VTAIIHNATPVHLNA-AEPDEMIIPALQGTLGILESARAHGTalqRVVVLSSTATVWRSNTDPSKTLDLDETCWNDEEvaqcrekgraatPLAMYRASK 194
                 *******99888887.7788899999*************997444678889999999999988888877776543333122233344444677888888 PP

   3Beta_HSD 151 alaEklvlk 159
                  laE++  +
  CDO69078.1 195 TLAERAAWE 203
                 888877655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.7e-07    0.0015       1      36 [.      13      47 ..      13      64 .. 0.89
   2 ?    3.8   0.0     0.021        48      51     102 ..      94     151 ..      84     193 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.7e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele 36
                    GA+G ++  +vk+ll++ g++v+  vR+++k+ +l+
      CDO69078.1 13 GANGYIAVWIVKKLLDA-GFAVRGTVRSASKAMHLR 47
                    9****************.5************98765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.021
                     CCHHHHHHTT-SEEEES---TCC....HHHHHHHHHHHHHHCT..--EEEEEEETTTT CS
  NAD_binding_10  51 vedlaealkgadaVvsalggggk....deegaknivdaakeag..vkRfvlvsaigvg 102
                     v+d+++ + +a  V  +++  ++      +g+  i++ a+++g   +R+v++s+  + 
      CDO69078.1  94 VQDVTAIIHNATPVHLNAAEPDEmiipALQGTLGILESARAHGtaLQRVVVLSSTATV 151
                     345555555555555555555556766666799********995569**999997653 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.9e-06    0.0042       1      35 [.       9      43 ..       9     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.9e-06
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SH CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkse 35
                +lv+Ga G+++  +v+ ll+ag+ vr  vR  ++ 
  CDO69078.1  9 VLVTGANGYIAVWIVKKLLDAGFAVRGTVRSASKA 43
                79****************************99554 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.1e-05     0.092       3      57 ..       9      63 ..       7      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-T CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvD 57
                vlvtGa + I   i+k+l+ +G+ v  + rs++k+ ++ + +k++g+k+  + vD
  CDO69078.1  9 VLVTGANGYIAVWIVKKLLDAGFAVRGTVRSASKAMHLRNLFKAAGEKFELVIVD 63
                9**********************************99999999998888766555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   0.00063       1.4       1     144 [.       7     155 ..       7     160 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00063
                 SEEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..........--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHH..HHHHHSS---EEEE- CS
          KR   1 gtylitGGlGgLGlelarwlaekg.arhlvllsRsa........aadedskaliaelealgaevevvaaDvsdkdavealle..eikaeeppikGviha 88 
                 g +l+tG+ G ++  +++ l++ g a +  + s s+        +  ++ +++   + +  +ev+v    v ++++ + + +  ++++  + ++ +ih 
  CDO69078.1   7 GRVLVTGANGYIAVWIVKKLLDAGfAVRGTVRSASKamhlrnlfK--AAGEKFELVIVDDIVEVRVPFTFVHHSESERPCSQpgAFDEYVQDVTAIIHN 103
                 568999999999999999999999655544444442222222111..1111111122222233333333333333333222211233222444444444 PP

                 --------TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--T CS
          KR  89 AgvlrdklleemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsa 144
                 A      +  +++a++ ++++ p ++G+  + e  +   + l  +v++SS a+++ s+
  CDO69078.1 104 A------TPVHLNAAEPDEMIIPALQGTLGILESARAhgTALQRVVVLSSTATVWRSN 155
                 4......444566777788888888888876666665578888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1922.48
//
Query:       CDO69079.1  [L=394]
Description: hypothetical protein BN946_scf184992.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-14   52.0   0.0    4.1e-13   49.4   0.0    2.1  3  Epimerase        NAD dependent epimerase/dehydratase family
    8.7e-12   44.6   0.0    1.9e-11   43.5   0.0    1.5  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      3e-09   36.7   1.5    3.8e-09   36.4   0.1    1.8  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    4.5e-08   33.2   0.1      8e-08   32.4   0.1    1.4  1  NAD_binding_10   NAD(P)H-binding
    3.7e-07   29.6   0.1      2e-05   23.9   0.1    2.8  3  NAD_binding_4    Male sterility protein
    0.00071   19.2   0.1     0.0011   18.6   0.1    1.3  1  NmrA             NmrA-like family
     0.0014   18.1   0.5     0.0024   17.3   0.0    1.8  2  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
       0.06   13.3   0.1       0.13   12.1   0.1    1.6  1  KR               KR domain
      0.088   11.9   0.0       0.14   11.2   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
        0.1   12.9   0.1       0.25   11.6   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.2   5.7e+03     157     177 ..      37      60 ..      31      68 .. 0.64
   2 ?   -0.8   0.0      0.48   8.6e+02     214     234 ..      75      95 ..      70      99 .. 0.78
   3 !   49.4   0.0   2.3e-16   4.1e-13       1     131 [.     120     256 ..     120     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.2
                 HHHHT..-EEEEEEESEEESTT.S CS
   Epimerase 157 aaqyg..lnaiilrlfnlyGpr.n 177
                  +q+g  ++ ++l++  ++Gp  n
  CDO69079.1  37 MKQGGrkWDLVVLNPPCVFGPIlN 60 
                 455533378899999999999754 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.48
                 EHHHHHHHHHHHHHHHTT-ST CS
   Epimerase 214 yveDvaeaillvlehvdagdk 234
                 + +Dv+++++++l +  a +k
  CDO69079.1  75 WYDDVVKGSVTMLSQTTALQK 95 
                 469**********99766655 PP

  == domain 3  score: 49.4 bits;  conditional E-value: 2.3e-16
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 +lVtGa+Gf+ + +vk ll++g  v g  r +++ ++ r+  l          +v  d+t+++a+++ +k  ++ a+ih A    v+ ++ +p+++i  
  CDO69079.1 120 VLVTGANGFVATWIVKSLLDAGFSVRGTVRSETKTKHLRN--LfksagdrleFFVVDDITKEDAFDESVK--DISAIIHTA--TPVHLNAVEPEEIIIP 212
                 79****************************9777666554..34589****999999*************..8*******5..57788889******** PP

                 HTHHHHHHHHHHHHHTCT..EEEEEEEGGGGTSCSSSS.BSTCS CS
   Epimerase  91 nlqgtlnlleaarkagvk..rllflsSsevYGkdaeqp.keett 131
                  +qgtl +l    k+g+   r++ lsS++   ++++ p k+ ++
  CDO69079.1 213 AVQGTLGILTSTLKHGASveRIVILSSTAAVARSNPDPsKTLVL 256
                 ***************66555**************9988555444 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.3   4.1e+03     164     185 ..      36      58 ..      31      62 .. 0.79
   2 !   43.5   0.0     1e-14   1.9e-11       1     122 [.     121     245 ..     121     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
   3Beta_HSD 164 tlkngg.rlyTcaLRpagiyGeg 185
                  +k+gg +   + L p  ++G+ 
  CDO69079.1  36 LMKQGGrKWDLVVLNPPCVFGPI 58 
                 56777777788999999999985 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 1e-14
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkG 95 
                 +vtG+ GF+   +vk+L++++    vr       + ++l++ +++ + +   ++  D+t++d  +e +++++++ih+a+ v +   ++ +ei    v+G
  CDO69079.1 121 LVTGANGFVATWIVKSLLDAGF--SVRGTVrsETKTKHLRNLFKSAGDRLefFVVDDITKEDAFDESVKDISAIIHTATPVHLNA-VEPEEIIIPAVQG 216
                 69******************96..55533210333444444555554444889999*********************99999988.5666699999*** PP

   3Beta_HSD  96 Trnvleacvkag..vrvlvYtSsaevvgp 122
                 T  +l + +k+g  v+++v  Ss  +v  
  CDO69079.1 217 TLGILTSTLKHGasVERIVILSSTAAVAR 245
                 *********98644777777666665543 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   2.3e+03     220     242 ..      72      92 ..      69     102 .. 0.82
   2 !   36.4   0.1   2.1e-12   3.8e-09       1     131 [.     121     242 ..     121     244 .. 0.86
   3 ?   -3.5   0.0       2.9   5.2e+03     151     169 ..     348     365 ..     337     381 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
                    EEEEEEHHHHHHHHHHHHHCSS- CS
  GDP_Man_Dehyd 220 kRdwghvkDyveamwlmlqqdkp 242
                    +Rdw    D+v++ ++ml q ++
     CDO69079.1  72 TRDWYD--DVVKGSVTMLSQTTA 92 
                    899975..********9999875 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 2.1e-12
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG +Gf+  ++++ Ll+ g+ v g+vr   +++t+++++l k+   +l    +++  D+t +++ ++ ++++   ++++ A   h +    +Pe
     CDO69079.1 121 LVTGANGFVATWIVKSLLDAGFSVRGTVRS--ETKTKHLRNLFKSAGDRL---EFFVVDDITKEDAFDESVKDI--SAIIHTATPVHLN--AVEPE 207
                    9*************************9975..56789******8765443...368889*************98..8*****9987766..589** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGG CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsE 131
                    + +   v Gtl +L    ++g + +  ++ +St+ 
     CDO69079.1 208 EIIIPAVQGTLGILTSTLKHGASVERIVILSSTAA 242
                    *******************9987665666667765 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.9
                    SHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 151 sPYaaaKlyadwivvnyre 169
                      Y a+K+ ++ +v n ++
     CDO69079.1 348 TSYDASKA-KHVMVYNNKK 365
                    34555553.2333333333 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   4.5e-11     8e-08       1     108 [.     124     250 ..     124     280 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.5e-11
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEE.EE--TT-CCHHHHHHTT-SEEEES---TCC...........HHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglev.vegdvtdvedlaealkgadaVvsalggggk...........deega 78 
                     GA+G v+  +vk ll++ g++v+  vR++ k+++l+     a ++le  v+ d+t++++  e +k+++a++ ++ + +              +g+
      CDO69079.1 124 GANGFVATWIVKSLLDA-GFSVRGTVRSETKTKHLRnlfksAGDRLEFfVVDDITKEDAFDESVKDISAIIHTATPVHLnavepeeiiipAVQGT 217
                     9****************.5*********99999766555544589996255799*******************9544433333333444444448 PP

                     HHHHHHHHHCT..--EEEEEEETTTT.SGCGCH CS
  NAD_binding_10  79 knivdaakeag..vkRfvlvsaigvg.devpge 108
                       i++   ++g  v+R+v++s+  +  ++ p++
      CDO69079.1 218 LGILTSTLKHGasVERIVILSSTAAVaRSNPDP 250
                     88888877755559***9999976540344443 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1     2e+03     184     211 ..      34      66 ..      32     100 .. 0.66
   2 !   23.9   0.1   1.1e-08     2e-05       1     181 [.     122     287 ..     122     290 .. 0.75
   3 ?   -2.7   0.0       1.5   2.6e+03      38      86 ..     336     382 ..     333     386 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                    HHHHHHHHHHH---EEEEEE-EEE-.......-SS CS
  NAD_binding_4 184 EklvrearrrsglpvvivRpsiitg.......esk 211
                    Ekl+++ +   ++ +v++ p+++ g       +++
     CDO69079.1  34 EKLMKQGG--RKWDLVVLNPPCVFGpilnevdNPE 66 
                    77888888..4688899999999987777666333 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.1e-08
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEE.EE--TTSGGGG--HHHHHHHHHH--EEEE-- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikv.veGDlseprlGLseedlqelaeevdviihsa 95 
                    +TGa GF+++ +++ LL+      +   vR++++++ ++ l         f+ +     +r+++ v+ D++++      ++++e ++ +++iih a
     CDO69079.1 122 VTGANGFVATWIVKSLLDAGF--SVRGTVRSETKTKHLRNL---------FKSA----GDRLEFfVVDDITKE------DAFDESVKDISAIIHTA 196
                    7****************9986..788888888774443333.........3333....456665156677765......59*************** PP

                    SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--...-EEEEEEGGGTTS-TTT--SSS-H........HHH--EEEETTTCCCHHHHHHH CS
  NAD_binding_4  96 Atvnfde.pykellrvNveGtrevlelakklkkl..kvllhvSTayvngeregeveekvyeege..keekldederaklkglpntYeqsKa 181
                      v++++ + +e++ + v+Gt  +l+   k  +   + ++  STa+v++ + +  +  v++e    +ee ++  e+ +++    +Y  sK 
     CDO69079.1 197 TPVHLNAvEPEEIIIPAVQGTLGILTSTLKHGASveRIVILSSTAAVARSNPDPSKTLVLDESSwnDEEVAQCREKGRDATPLAKYRASKT 287
                    ******967788************9877755444447888889999999999888777777666545555555555556666669999996 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
                    HHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHH CS
  NAD_binding_4  38 eeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelae 86 
                    ++R+++++   +   +++   a+ + v++   + + lG++ ++++el++
     CDO69079.1 336 AHRVTDKIPAGNTSYDAS--KAKHVMVYNNKKALKILGIKYRTVEELTK 382
                    556655555544444443..56777777777888889999999999876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   6.1e-07    0.0011       1      73 [.     120     197 ..     120     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.1e-07
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTEE...EES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGvel...vkgdlddkeslvealkgvdvvfsvtg 73 
                 +lv+Ga G  +  +v+ ll+ag++vr  vR +  +++l + +k+aG  l   v +d+  ++  +e +k+  +++ + +
  CDO69079.1 120 VLVTGANGFVATWIVKSLLDAGFSVRGTVRSEtkTKHLRNLFKSAGDRLeffVVDDITKEDAFDESVKDISAIIHTAT 197
                 79****************************987555566678999976444489999999999999999999987765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0024       3      74 ..     120     192 ..     118     246 .. 0.90
   2 ?   -4.1   0.1         5     9e+03     145     154 ..     346     355 ..     343     361 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEE.EEEE-TTTSHHHHHHHHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegaka.laiqvDvtdreevealvekavkk 74 
                 vlvtGa + +   i+k l+ +G++v  + rse k +++ + +k++g+++ +++  D+t++++ ++ v+++ + 
  CDO69079.1 120 VLVTGANGFVATWIVKSLLDAGFSVRGTVRSETKTKHLRNLFKSAGDRLeFFVVDDITKEDAFDESVKDISAI 192
                 9********************************************77761556668********999998765 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5
                 TBHHHHHHHH CS
   adh_short 145 gvaaYsAsKa 154
                 g ++Y AsKa
  CDO69079.1 346 GNTSYDASKA 355
                 6789999998 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.5e-05      0.13       1     143 [.     118     246 ..     118     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.5e-05
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE---.-TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaa.DvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 g +l+tG+ G +++ +++ l++ g + +  + Rs   + + k+l + +++ g + e++ + D++++da  + +++i+        +ih+A  ++ +++e
  CDO69079.1 118 GKVLVTGANGFVATWIVKSLLDAGFS-VRGTVRS---ETKTKHLRNLFKSAGDRLEFFVVdDITKEDAFDESVKDIS-------AIIHTATPVHLNAVE 205
                 678********************964.4455566...2233334455566799999877636999999888887775.......99***9988766654 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH-- CS
          KR  99 emtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgs 143
                        e+++ p v+G+  + + + +   s++ +v++SS a++  s
  CDO69079.1 206 ------PEEIIIPAVQGTLGILTSTLKhgASVERIVILSSTAAVARS 246
                 ......57789999999986555555548999999999999998765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-05      0.14       2      70 ..     119     207 ..     118     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHS CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEse 70 
                    k+lvtGanG +++ ++k+l  +g++v ++ r+                        d+t+++a +e +k++  ++++++A      ++E e
     CDO69079.1 119 KVLVTGANGFVATWIVKSLLDAGFSVRGTVRSetktkhlrnlfksagdrleffvVDDITKEDAFDESVKDI--SAIIHTATPVHLNAVEPE 207
                    79***************************999788888888888888888888777888888888888884..558888876666666655 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00014      0.25       1      81 [.     120     200 ..     120     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
                      EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGG CS
  Sacchrp_dh_NADP   1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppis 81 
                      vl+ Ga G+v+  +++ l++ +    + tv + +k+k  + + k +g r+e+  +d   +e+  ++ +k+  ++++ ++p+ 
       CDO69079.1 120 VLVTGAnGFVATWIVKSLLDAGFS-VRGTVRSETKTKHLRNLFKSAGDRLEFFVVDDITKEDAFDESVKDISAIIHTATPVH 200
                      7999***********999988743.4*********9999999999***********9999999***************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 2537.16
//
Query:       CDO69080.1  [L=980]
Description: hypothetical protein BN946_scf184992.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-91  303.2   0.0    6.9e-91  302.6   0.0    1.3  1  Citrate_bind  ATP citrate lyase citrate-binding
    2.4e-19   69.7   0.0    9.1e-17   61.2   0.0    2.8  2  Citrate_synt  Citrate synthase, C-terminal domain
    3.2e-08   34.1   0.0      7e-08   33.1   0.0    1.5  1  CoA_binding   CoA binding domain
    2.9e-07   30.3   0.0    5.1e-07   29.5   0.0    1.4  1  ATP-grasp_2   ATP-grasp domain


Domain annotation for each model (and alignments):
>> Citrate_bind  ATP citrate lyase citrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.6   0.0   1.5e-94   6.9e-91       1     177 [.     293     470 ..     293     471 .. 0.99

  Alignments for each domain:
  == domain 1  score: 302.6 bits;  conditional E-value: 1.5e-94
  Citrate_bind   1 relskeeayiaeldaktgaslKltvlnpkgriwtlvaGGGasvvyaDtiadlglaselanYgeysGapseeqtyeyaktildlmtre.krpdgkvli 96 
                   r+l+keeayi++lda tgaslKltvlnp+griwt+vaGGGasvvy+D+ia++g+a+elanYgeysGapse qtyeyaktildlmtr  +rpdgk+li
    CDO69080.1 293 RDLTKEEAYIQKLDASTGASLKLTVLNPEGRIWTMVAGGGASVVYSDAIAAHGFAHELANYGEYSGAPSEGQTYEYAKTILDLMTRGkPRPDGKILI 389
                   6889**********************************************************************************989******** PP

  Citrate_bind  97 iGggianftnvaatfkgiiraleelksklkehkvkiyvrrggpnyqeglkamkelgeelglpikvfgpethitaivklalg 177
                   iGggianftnvaatfkgiiral+e+k  l +h+vkiyvrrggpnyqeglkam+ lge+lg+pikv+gp+thitaiv+lalg
    CDO69080.1 390 IGGGIANFTNVAATFKGIIRALKEYKAPLVAHQVKIYVRRGGPNYQEGLKAMRLLGESLGVPIKVYGPDTHITAIVPLALG 470
                   *******************************************************************************97 PP

>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0013         6      12      50 ..     713     752 ..     707     758 .. 0.85
   2 !   61.2   0.0     2e-20   9.1e-17     165     353 ..     755     951 ..     749     958 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0013
                   SEEEETTTTE.EEETTEEHHHHHHHHS-HHHHHHHHHHSS CS
  Citrate_synt  12 isevdgekge.lrYRGydieeLaeekssfeevaylLltge 50 
                   is++  e+g+ l+Y G+ i +  +e   +  v+ lL++++
    CDO69080.1 713 ISTISDERGQeLLYAGMRISDVFKEDIGVGGVVSLLWFKR 752
                   67776667777************99************975 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 2e-20
                   -HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT.TT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC-SS CS
  Citrate_synt 165 deeeaklldlalvlhaDHelnaSTfaarvvaS.tladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGHrv 260
                    + + k+++++l+l aDH+ ++S ++  +va  ++ dl+s++a+g+ +  G + gga +++  m+ ++++  ++ +e++++  +++ + + G+GH++
    CDO69080.1 755 PPWATKFIEMVLMLTADHGPAVSGAMNTIVATrAGKDLISSLASGLLTI-GSRFGGALDEAASMFSNARDTGLTPREFVDSCRKQN-KLISGIGHKI 849
                   5667899*************99988877766559**************9.******************77766*********8865.*********9 PP

                   SS..S--HHHHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHH..............HHHHHHH CS
  Citrate_synt 261 yk..ksDpRakilkelaeelaeekgkdpllklaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftv..............lfaisRv 341
                    +  + D R++++ke++++++    ++ ll+ a ++e+v+ +    k+   l  NvD   +v +  l  ++ +ft+              lf+++R+
    CDO69080.1 850 KSvnNPDLRVELVKEYVHKHFP---SHSLLDYALAVEKVTTS----KK-DTLILNVDGCIAVCFVDLLRDSGAFTPeeadeyikigtlngLFVLGRS 938
                   85227888*********99987...899**************....24.689*****9999999888766666665444444444444559999999 PP

                   HHHHHHHHHHH.H CS
  Citrate_synt 342 aGwlAhileql.a 353
                   +G++ h l+q+  
    CDO69080.1 939 IGFIGHHLDQKrL 951
                   9999999998644 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.6e-11     7e-08       2      73 ..     546     627 ..     545     640 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.6e-11
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET.........TEEEESCHHHHHHHC.TTTEEEEES-HH CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl.........glpvyksvdeleekt.evdvavitvPae 73 
                   +t+ +v+G + ++i+g+++f+  +++ +++v+   + ++g  ++          lpvy+sv+e+ +k+ +vdv v +++++
   CDO69080.1 546 AQTRSFVYGLQPRAIQGMLDFDYSCGRDTPSVAAMIYPFGGHHIQkfywgtketLLPVYTSVAEACKKHpDVDVVVNFASSR 627
                  578999***************************************************************88*******9886 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.1e-10   5.1e-07      41     202 .]      68     222 ..      62     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.1e-10
                  SEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEEE--..-ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHH CS
  ATP-grasp_2  41 elvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlveeal..dikkElYlsivlDraskkvvviaSseGGvdiEeva 136
                  +lv K   l+  RGKag + l k+ eeake + +  gk  +    ++   + ++ +ve  l  + + E+Y+ i  +r+     +++ +eGGvdi +v 
   CDO69080.1  68 KLVAKPDQLIKRRGKAGLLALNKTWEEAKEWIVQRAGKPQK---VESVTGTLNNFIVEPFLphPSDAEYYVCINSEREG--DYILFTHEGGVDIGDVD 160
                  667888888889********************999999877...45555678888888755116789***998777765..567889**********9 PP

                  HH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
  ATP-grasp_2 137 akkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfveldatlvEiNPLvv 202
                  ak  +    +++      +++ a +++k++  ++++ +++++++ +ly+++v+l    +EiNPLvv
   CDO69080.1 161 AKALK--LSLPVGEPFPSRQTIADTLLKHV--PASKKETLVDFLIRLYSVYVDLHFAYLEINPLVV 222
                  98633..34455555566666677777665..5566799*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 6190.93
//
Query:       CDO69081.1  [L=311]
Description: hypothetical protein BN946_scf184992.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-30  104.4  19.7    8.9e-30  104.0  19.7    1.1  1  DUF1275   Protein of unknown function (DUF1275)


Domain annotation for each model (and alignments):
>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0  19.7     5e-34   8.9e-30       3     191 ..      72     293 ..      71     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 5e-34
     DUF1275   3 lllafvaGllDavaflaaggvfvsaqTGNtvllglalae......gna......kaalaalvsllaFvlGaalagllarrggrrrrlvllle....all 85 
                 ++ +f++G++D+v+f +a+ v++++qTGN v+l+lala+      g         a ++al+s+l F++Ga l+++  r+ g ++r++l+l     al+
  CDO69081.1  72 AAYCFMTGFIDSVSF-TAVFVWCGFQTGNSVQLALALARlfsgppG-QrdtsfhIADQQALTSVLTFIAGASLGRIGDRM-GAKTRAWLFLGtmiqALF 167
                 6789***********.8*******************6544443331.03444444445599**********888877544.678888888886775666 PP

     DUF1275  86 llaaallvpagsvsp.................lalallafamGlqnalfsrlsgaeitttvlTgnltdlgidlarll.kkrk.larnrrlaiilafllG 165
                 ++aaal ++ +s +                  +ala++++++Glq  + +r++ +  tt+vlT+++++l++d++ l  ++ +  +r++ l++i+a++lG
  CDO69081.1 168 TMAAALTAW-KSGQGsiaevrgdpawtnalsfVALAFMSASLGLQGIMGKRVNTQFATTIVLTTVWCELMADPKLLNfRQ-RvISRDHKLIAIFALFLG 264
                 666665544.33333799999999999999999***************888*********************99987544.345599************ PP

     DUF1275 166 avvGallvks...aaalwlaaallllval 191
                 ++vG +++ +   aa+l + +++ +++a+
  CDO69081.1 265 GFVGRAIIDAkgaAATLGVGTGMRVVIAI 293
                 ************999999***99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2211.28
//
Query:       CDO69082.1  [L=352]
Description: hypothetical protein BN946_scf184992.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-11   41.7   0.0    1.5e-10   40.9   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
    7.8e-07   29.2   0.1    1.5e-06   28.2   0.1    1.4  1  NAD_binding_10  NAD(P)H-binding
    1.2e-05   24.5   0.0    1.6e-05   24.1   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    0.00023   20.7   0.0      0.009   15.4   0.0    2.1  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
     0.0012   18.1   0.0      0.045   12.9   0.0    2.2  2  NAD_binding_4   Male sterility protein
     0.0033   17.0   0.0     0.0071   15.9   0.0    1.6  1  NmrA            NmrA-like family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   5.1e-14   1.5e-10       1     228 [.       9     269 ..       9     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 5.1e-14
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 +lVtGa+G+  + ++k+lle+g  v g +r +s+ ++ r+  +        +v  d +++ a ++++k  ++da++h+   +    + ++p d ++  +
  CDO69082.1   9 VLVTGANGYAATWILKELLERGFIVRGTTRSESKAAFVRDLLKsfgdrleLVVIPDARKEGAHDDALK--DVDAILHV--ASPTILNPKHPDDDVRPAI 103
                 79*****************************88888877655599*988666677888888999*999..89******..556667789********** PP

                 HHHHHHHHHHHHH..TCTEEEEEEE.GGGGT.................SCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT........- CS
   Epimerase  93 qgtlnlleaarka..gvkrllflsS.sevYG.................kdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyg........l 162
                 q tl ll+ a+k+   vkr++  sS +++ +                 ++a    + + ++g+   p+  Y a+K+++e+ ++a++  ++        +
  CDO69082.1 104 QSTLSLLQSAFKHrdTVKRVVITSSvVALAPladpgdapkvidesswnDVA---VQHVREKGKDsDPHMGYPASKTLSEREAWAFWTRGNeklggkldW 199
                 ***********9988999*******44555587777777776655554222...333444455569********************99988999***** PP

                 EEEEEEESEEESTT....S-TTSTTSHHHHHHHHHHTTS...SSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 163 naiilrlfnlyGpr....ngegevsrvipalirkilegk...qevtllgdgtalRdflyveDvaeaillvleh 228
                 + ++l +  + Gp     + +++ ++ + ++ + +++g    ++  l+ +g +   f++v+D a+a +  l +
  CDO69082.1 200 DLVTLVPPFILGPIindiTTTEQLNGPVQYFWSAVAKGAyqhDKDALVRKGYQ---FIDVRDFARAQVESLLK 269
                 *************9999734444555555555555555544447777777766...*********99887776 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1     5e-10   1.5e-06       1     105 [.      13     135 ..      13     164 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CT..TTCEEEE-.-TT-CCHHHHHHTT-SEEEES---TCC.....HHHH......H CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...ae..eglevveg.dvtdvedlaealkgadaVvsalggggk.....deeg......a 78 
                     GA+G  +  ++kell+r g+ v+  +R+++k+a ++   ++  ++le+v++ d+ ++ +  +alk++da++  ++++       d+++      +
      CDO69082.1  13 GANGYAATWILKELLER-GFIVRGTTRSESKAAFVRdllKSfgDRLELVVIpDARKEGAHDDALKDVDAILHVASPTILnpkhpDDDVrpaiqsT 106
                     9****************.5*************95543332234799988865******************9999544443333444446677775 PP

                     HHHHHHH.HH.CT--EEEEEEETTTTSGC CS
  NAD_binding_10  79 knivdaa.ke.agvkRfvlvsaigvgdev 105
                      ++++ a k    vkR+v+ s++ +    
      CDO69082.1 107 LSLLQSAfKHrDTVKRVVITSSVVALAPL 135
                     5555554143145********99887643 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.4e-09   1.6e-05       1     122 [.      10     134 ..      10     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.4e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespe..lleelskvnvkk..viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkG 95 
                 +vtG+ G+    + keL++++    vr     es+   +++ l++++ +   v+  D +++   ++al++vd+++h+as + +  k  +d   +  ++ 
  CDO69082.1  10 LVTGANGYAATWILKELLERGF--IVRGTTRSESKAafVRDLLKSFGDRLelVVIPDARKEGAHDDALKDVDAILHVASPTILNPKHPDD-DVRPAIQS 105
                 69*******************5..677666555443226788888887767899*************************99999977777.456789** PP

   3Beta_HSD  96 Trnvleacvka..gvrvlvYtSsaevvgp 122
                 T ++l++++k+   v+++v tSs+ +  p
  CDO69082.1 106 TLSLLQSAFKHrdTVKRVVITSSVVALAP 134
                 *********98446*********988776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06     0.009       1     129 [.      10     128 ..      10     130 .. 0.82
   2 ?    3.2   0.0     0.016        48     223     267 ..     253     298 ..     241     344 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-06
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEE.E--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklh.kgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    L+TG +G+   ++++ Lle+g+ v g++r +s+ +   ++ l k+      ++l+l+   D + + + +++l++v  d++++ A     +   ++P
     CDO69082.1  10 LVTGANGYAATWILKELLERGFIVRGTTRSESKAA--FVRDLLKS----FGDRLELVvIPDARKEGAHDDALKDV--DAILHVASPTILNP--KHP 95 
                    9*************************999887744..56667653....456777651569999*********98..9******9998877..789 PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaSt 129
                    +  ++  +  tl LL+ + ++  ++ +r++++S+
     CDO69082.1  96 DDDVRPAIQSTLSLLQSAFKHR-DTVKRVVITSS 128
                    9999999999999999998875.34567777765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.016
                    EEEHHHHHHHHHHHH.HCSS---EEE-TT-EEECHHCHHCCHHCCC CS
  GDP_Man_Dehyd 223 wghvkDyveamwlml.qqdkpedyviatgethsvrefvelaflelg 267
                    +  v+D+++a++  l +++   + +i tg+++  ++f+++a + + 
     CDO69082.1 253 FIDVRDFARAQVESLlKEEARGQRLIVTGHEFVWQQFIDIARKYTD 298
                    7789******887661555668899******999999999876655 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.014        42       1      19 [.      11      29 ..      11      53 .. 0.86
   2 !   12.9   0.0   1.5e-05     0.045      83     185 ..      73     180 ..      67     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.014
                   EE-TTSHHHHHHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrt 19
                   +TGa G+ ++ +l++LL++
     CDO69082.1 11 VTGANGYAATWILKELLER 29
                   7****************87 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.5e-05
                    HHHHH--EEEE--SS-S.STTS.SEEHHHHHHHHHHHHHHHTSSS--..-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCC CS
  NAD_binding_4  83 elaeevdviihsaAtvnfdepy.kellrvNveGtrevlelakklkkl.kvllhvST..ayvngeregeveekvyeegekeekldederaklkglpn 174
                    +  + vd+i+h+a  + ++ +  ++ +r+ +++t  +l+ a k + + k ++  S+  a +  ++ g   + + e+ +++++++   ++ +++ p+
     CDO69082.1  73 DALKDVDAILHVASPTILNPKHpDDDVRPAIQSTLSLLQSAFKHRDTvKRVVITSSvvALAPLADPGDAPKVIDESSWNDVAVQHVREKGKDSDPH 168
                    55689**********99998651669***************9887775788888888888888888887677777777777766655555444444 PP

                    .HHHHHHHHHHH CS
  NAD_binding_4 175 .tYeqsKalaEk 185
                     +Y  sK l+E+
     CDO69082.1 169 mGYPASKTLSER 180
                    4*********97 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-06    0.0071       1      72 [.       9      85 ..       9     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE-- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt.....kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvt 72
                +lv+Ga G+ +  + + ll++g+ vr  +R +      ++l+ks+ ++   +v  d+  +   + alk+vd++  v 
  CDO69082.1  9 VLVTGANGYAATWILKELLERGFIVRGTTRSEskaafVRDLLKSFGDRLELVVIPDARKEGAHDDALKDVDAILHVA 85
                79*****************************977777777888888887778899****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2563.53
//
Query:       CDO69083.1  [L=342]
Description: hypothetical protein BN946_scf184992.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-17   61.8   0.0    9.7e-17   61.2   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.3e-12   47.3   0.0    1.8e-12   46.8   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.1e-10   40.8   0.9    3.5e-10   40.1   0.9    1.3  1  NAD_binding_10   NAD(P)H-binding
    5.1e-09   35.7   0.2    8.5e-08   31.7   0.2    2.1  1  NAD_binding_4    Male sterility protein
    6.1e-09   35.7   0.0    1.7e-08   34.3   0.0    1.7  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    9.6e-07   28.6   0.2    1.8e-06   27.7   0.1    1.5  1  NmrA             NmrA-like family
    0.00017   20.8   0.1    0.00026   20.2   0.1    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0072   16.3   0.2       0.14   12.1   0.2    2.2  1  KR               KR domain
  ------ inclusion threshold ------
      0.015   14.7   1.7      0.015   14.7   0.1    1.8  2  adh_short        short chain dehydrogenase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   4.9e-20   9.7e-17       1     230 [.       9     262 ..       9     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 4.9e-20
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 +lVtGa+G+i + +v+ lle+g  v g  r   as+ta l+dl          +v  d+t++ a+++++k  ++da+ h A     +a   dp+++i  
  CDO69083.1   9 VLVTGANGYIATWVVRTLLEQGFSVRGTVRS--ASKTAYLRDLfksycdkfeVVVVEDITKDGAFDDAVK--GVDAIEHTASPFYLKA--VDPEEVIVP 101
                 79*****************************..788888888899****99888888*************..9*******77555555..9******** PP

                 HTHHHHHHHHHHHHHTCT..EEEEEEEGGGGT.........SCSSSS.......BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT....-EEEE CS
   Epimerase  91 nlqgtlnlleaarkagvk..rllflsSsevYG.........kdaeqp.......keettltgpl.kpnspYaaaKlageklveayaaqyg....lnaii 166
                  ++gt+ +l+ a+k+g    r++  sS++                          +e+ ++g        Y a+K+++e+ ++++ ++++    ++ ++
  CDO69083.1 102 AVHGTTSVLKSAQKYGTSvkRVVITSSTAAVLtpasephvfS----EadwneasIQEVKEKGRDaGGAAKYRASKTLAERAAWEFYEKNKaslsWDLVV 196
                 ***************655548888888665552444444440....0444444566777777777999*****************9999888889**** PP

                 EEESEEESTT....S-TTSTTSHHHHHHHHHHTTS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHT CS
   Epimerase 167 lrlfnlyGpr....ngegevsrvipalirkilegk.qevtllgdgtalRdflyveDvaeaillvlehvd 230
                 l++  ++Gp     + +++ +    ++  ++ +gk ++  l++dg++   +++v+D+a a+ l+++++ 
  CDO69083.1 197 LNPPFVFGPVihavDVPENLNESARQWYFNVVKGKlDNDALVNDGSS---YVDVRDLALAHTLAIQKPP 262
                 **********999877888888888889999999999*********9...****************964 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   9.2e-16   1.8e-12       1     231 [.      10     260 ..      10     281 .. 0.68

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 9.2e-16
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee..lkevrvlDlrespelleelskvnvkk...viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvk 94 
                 +vtG+ G++   +v++L++ +     +vr++    ++  l +l+k+  +k   v+  D+t+    ++a++gvd++ h+as   ++ ++ e+ +    v+
  CDO69083.1  10 LVTGANGYIATWVVRTLLEQGFsvRGTVRSAS---KTAYLRDLFKSYCDKfevVVVEDITKDGAFDDAVKGVDAIEHTASPFYLKAVDPEE-VIVPAVH 104
                 69*****************9963234555544...3344455555555555667899***********************99999977666.66678** PP

   3Beta_HSD  95 GTrnvleacvkag..vrvlvYtSsaevv.gpnslgeeilngdEele.yesl........hqdaypesKalaEklvlkaNgrtlkngg..rlyTcaLRpa 179
                 GT +vl+++ k g  v+++v tSs  +v  p s+ + + ++d ++  ++++          + y  sK laE++  +  +   kn +      + L p 
  CDO69083.1 105 GTTSVLKSAQKYGtsVKRVVITSSTAAVlTPASEPHVFSEADWNEAsIQEVkekgrdagGAAKYRASKTLAERAAWEFYE---KNKAslSWDLVVLNPP 200
                 *********9964339999999876655167677777777764332122222333333345679999*****99998888...666622445799**** PP

   3Beta_HSD 180 giyGegdkllv..pllkqlaklglalfkigd..eevl....sdrvYvgNvawahilAara 231
                  ++G+  + +   + l+++a++ +  +  g+  +++l    s++v v  +a ah lA ++
  CDO69083.1 201 FVFGPVIHAVDvpENLNESARQWYFNVVKGKldNDALvndgSSYVDVRDLALAHTLAIQK 260
                 *****8766541134444444443333333211222212224567777899999998875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.9   1.7e-13   3.5e-10       1     121 [.      13     156 ..      13     179 .. 0.70

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.7e-13
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CT..TTCEEEE-.-TT-CCHHHHHHTT-SEEEES---TCC.....HHHH....... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...ae..eglevveg.dvtdvedlaealkgadaVvsalggggk.....deeg....... 77 
                     GA+G ++  +v+ ll++ g++v+  vR+++k+a l+   ++  ++ evv++ d+t+  +  +a+kg+da+  ++++        +          
      CDO69083.1  13 GANGYIATWVVRTLLEQ-GFSVRGTVRSASKTAYLRdlfKSycDKFEVVVVeDITKDGAFDDAVKGVDAIEHTASPFYLkavdpE--Evivpavh 104
                     9****************.5*************976644333346777666439*****************999966555444331..23566666 PP

                     .HHHHHHHHHHCT..--EEEEEEETTT.TS..GCGCHHH..HHHHHCCHHHH CS
  NAD_binding_10  78 .aknivdaakeag..vkRfvlvsaigv.gd..evpgefg..ewnkellkayl 121
                      + ++++ a++ g  vkR+v+ s+  +     + p+ f+  +wn+  ++++ 
      CDO69083.1 105 gTTSVLKSAQKYGtsVKRVVITSSTAAvLTpaSEPHVFSeaDWNEASIQEVK 156
                     7**********76669***999996652431122333321146666666655 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.2   4.3e-11   8.5e-08       1     209 [.      11     212 ..      11     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.3e-11
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTE.EEEE--TTSGGGG--HHHHHHHHHH--EEEE-- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaeri.kvveGDlseprlGLseedlqelaeevdviihsa 95 
                    +TGa G++++ +++ LL++     +   vR+ s+++ ++ l         f+       ++  +vv+ D++++       ++++ ++ vd+i h a
     CDO69083.1  11 VTGANGYIATWVVRTLLEQGF--SVRGTVRSASKTAYLRDL---------FKSY----CDKFeVVVVEDITKDG------AFDDAVKGVDAIEHTA 85 
                    79***************9986..788889988774444444.........4333....2333056677999876......9*************** PP

                    SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--...-EEEEEE.GGGTTS-TTT--SSS-H........HHH--EEEETTTCCCHHHHHHHHHHH CS
  NAD_binding_4  96 Atvnfde.pykellrvNveGtrevlelakklkkl..kvllhvST.ayvngeregeveekvyeege..keekldederaklkglpntYeqsKalaEk 185
                        +++ + +e++ + v+Gt  vl+ a+k      +v++  ST a++++++e +v      e +  ++ + + +e+ +++g + +Y  sK laE+
     CDO69083.1  86 SPFYLKAvDPEEVIVPAVHGTTSVLKSAQKYGTSvkRVVITSSTaAVLTPASEPHVFS----EADwnEASIQEVKEKGRDAGGAAKYRASKTLAER 177
                    **99998788999****************64443337888889988888888877633....33334666777778889999999*********** PP

                    HHHHHHHHH---....EEEEEE-EEE-.......- CS
  NAD_binding_4 186 lvrearrrsglp....vvivRpsiitg.......e 209
                       e  ++++      +v++ p+ + g        
     CDO69083.1 178 AAWEFYEKNKASlswdLVVLNPPFVFGpvihavdV 212
                    **998877665533336999999998866655440 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   8.4e-12   1.7e-08       1     132 [.      10     132 ..      10     151 .. 0.85
   2 ?   -1.8   0.0      0.78   1.6e+03     223     268 ..     244     289 ..     238     329 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 8.4e-12
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEE.EEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlk.lhkgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    L+TG +G+i  ++++ Lle+g+ v g+vr +s+  t+ ++ l k+      ++++ ++  D+t   + +++++ v  d++ + A     +    +P
     CDO69083.1  10 LVTGANGYIATWVVRTLLEQGFSVRGTVRSASK--TAYLRDLFKSY---C-DKFEvVVVEDITKDGAFDDAVKGV--DAIEHTASPFYLKA--VDP 95 
                    9***************************98887..66888888643...2.344426778**************9..9****998877765..89* PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGG CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEv 132
                    e+++   v Gt+ +L+ ++++g + k  ++ +St+ v
     CDO69083.1  96 EEVIVPAVHGTTSVLKSAQKYGTSVKRVVITSSTAAV 132
                    **********************876666666677665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.78
                    EEEHHHHHHHHHHHHHC.SS---EEE-TT-EEECHHCHHCCHHCCCH CS
  GDP_Man_Dehyd 223 wghvkDyveamwlmlqq.dkpedyviatgethsvrefvelaflelgk 268
                    +  v+D + a  l++q+   + + +i +  t++ ++fv +a  +l  
     CDO69083.1 244 YVDVRDLALAHTLAIQKpPVAGERIIVSASTYKWQDFVSAA-HHLDS 289
                    66788888888888888344577888888999999998744.44444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   9.1e-10   1.8e-06       1      69 [.       9      82 ..       9     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 9.1e-10
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEE CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt.....kselakslkeaGvelvkgdlddkeslvealkgvdvvf 69
                +lv+Ga G+++  vvr ll++g++vr  vR        ++l ks  ++  ++v +d+  +   + a+kgvd++ 
  CDO69083.1  9 VLVTGANGYIATWVVRTLLEQGFSVRGTVRSAsktayLRDLFKSYCDKFEVVVVEDITKDGAFDDAVKGVDAIE 82
                79******************************888888888999999999999******************974 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.3e-07   0.00026       1     132 [.       9     132 ..       9     137 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.3e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtGa G i   +vr++l++  + ++   r+  k   +++ ++ ++ +   k+e v+v+ d+++    ++a++  +vd++ h+A    + +v 
       CDO69083.1   9 VLVTGANGYIATWVVRTLLEQGFS-VRGTVRSASKTAYLRDLFK-SYCD---KFE-VVVVEDITKDGAFDDAVK--GVDAIEHTASPFYLKAV- 93 
                      89*****************99765.4444455555555555553.3333...344.789***************..*********98776665. PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT..-SEEEEEEEGGGS CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieag..vkkvvliStDKAv 132
                        p e+i   v+gt++v++ a+++g  vk+vv+ S+  Av
       CDO69083.1  94 -DPEEVIVPAVHGTTSVLKSAQKYGtsVKRVVITSSTAAV 132
                      .699******************9864499***99998777 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   6.9e-05      0.14       1     144 [.       7     136 ..       7     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 g +l+tG+ G +++ ++r+l+e+g + +  + Rsa++++  ++l+++  +   ev vv+ D+++  a   +++ ++        + h+A  +  k++  
  CDO69083.1   7 GKVLVTGANGYIATWVVRTLLEQGFS-VRGTVRSASKTAYLRDLFKSYCD-KFEVVVVE-DITKDGAFDDAVKGVD-------AIEHTASPFYLKAV-- 93 
                 678*********************54.55566775566666655555554.66888777.9999999999888876.......55577765543333.. PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--T CS
          KR 100 mtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsa 144
                     d e+v+ p v+G+  + +  ++  +s++ +v++SS a++l  a
  CDO69083.1  94 ----DPEEVIVPAVHGTTSVLKSAQKygTSVKRVVITSSTAAVLTPA 136
                 ....4467788888888776666666678888888888888887655 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   7.7e-06     0.015       3      72 ..       9      79 ..       7      84 .. 0.87
   2 ?   -2.1   0.1       1.1   2.3e+03     112     140 ..     102     132 ..      98     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.7e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEE.EEEE-TTTSHHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegaka.laiqvDvtdreevealvekav 72
                vlvtGa + I   ++++l+++G++v  + rs++k + + + +k+  +k+ +++  D+t+  + +++v+ + 
  CDO69083.1  9 VLVTGANGYIATWVVRTLLEQGFSVRGTVRSASKTAYLRDLFKSYCDKFeVVVVEDITKDGAFDDAVKGVD 79
                9**********************************999999999955551455669999999999998875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHH..HCTTEEEEEEEEGGGT CS
   adh_short 112 vflltravlpaml..kqssGrIvnvsSvagk 140
                 +++ t +vl+       s  r+v +sS+a+ 
  CDO69083.1 102 AVHGTTSVLKSAQkyGTSVKRVVITSSTAAV 132
                 5666777777643334455578888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2461.79
//
Query:       CDO69084.1  [L=342]
Description: hypothetical protein BN946_scf184992.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-16   61.2   0.0    1.5e-16   60.6   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.4e-13   49.8   0.0    3.5e-13   49.2   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.1e-10   39.3   0.1    4.6e-09   35.8   0.1    2.0  1  NAD_binding_4    Male sterility protein
    1.7e-09   37.8   0.6    2.6e-09   37.2   0.6    1.3  1  NAD_binding_10   NAD(P)H-binding
    1.3e-08   34.6   0.1    2.7e-08   33.6   0.1    1.5  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.6e-06   26.7   0.2    5.2e-06   26.2   0.2    1.3  1  NmrA             NmrA-like family
    0.00016   20.9   0.2    0.00022   20.4   0.2    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0011   18.5   0.2     0.0022   17.5   0.2    1.5  1  adh_short        short chain dehydrogenase
     0.0046   16.9   0.2      0.033   14.1   0.2    2.1  1  KR               KR domain
  ------ inclusion threshold ------
       0.12   11.9   0.6       0.26   10.8   0.2    1.7  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   8.4e-20   1.5e-16       1     238 [.       9     270 ..       9     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 8.4e-20
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 +lVtGa+G+i   +vk lle+g  v g  r  s+ +  +l++l          +v  d+t++ a+++++k  ++da+ h A   + +a   +p ++i  
  CDO69084.1   9 VLVTGANGYIAVWVVKTLLEHGFSVRGTVRAASKAA--HLRELfksygdkfeVVVVEDITKDGAFDEAVK--DVDAIEHTASPFHFKA--VEPDELIVP 101
                 79*****************************55555..45555669***99888888*************..89******88777776..8999***** PP

                 HTHHHHHHHHHHHHH..TCTEEEEEEEGGGGT............SCSSSS....BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT....-EEEE CS
   Epimerase  91 nlqgtlnlleaarka..gvkrllflsSsevYG............kdaeqp....keettltgpl.kpnspYaaaKlageklveayaaqyg....lnaii 166
                  ++gt+ +l+ a+k+   vkr++  sS++               +          +e+ ++g   +    Y a+K+++e+ ++++ ++++    ++ ++
  CDO69084.1 102 AVHGTTSILKSAQKYgtSVKRVVITSSCAAVLtpsteprvfseaD----WneasIQEVKEKGRDaAGPAKYRASKTLAERAAWEFYDKNKgslsWDLVV 196
                 ***************445559999999666553455554444431....033446666667777788899***************999965999***** PP

                 EEESEEESTT....S-TTSTTSHHHHHHHHHHTTS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEE CS
   Epimerase 167 lrlfnlyGpr....ngegevsrvipalirkilegk.qevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiy 238
                 l++  ++Gp     + +++ ++    +  ++ +g+ ++  l + g++   +++v+D+a a+ l+l+++da  ++ i+
  CDO69084.1 197 LNPPFVFGPTihevDVPENLNQSARDWYLNVVKGElDNDSLANIGSS---YVDVRDLALAHTLALQKPDAAGERIII 270
                 **********8887777777777788888888899988888888887...*******************97666565 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.9e-16   3.5e-13       1     231 [.      10     260 ..      10     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.9e-16
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee..lkevrvlDlrespelleelskvnvkk..viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkG 95 
                 +vtG+ G++   +vk+L++ +     +vr++   +  +l+e +++ + k   v+  D+t+    +ea+++vd++ h+as    +  ++ de+    v+G
  CDO69084.1  10 LVTGANGYIAVWVVKTLLEHGFsvRGTVRAAS--KAAHLRELFKSYGDKFevVVVEDITKDGAFDEAVKDVDAIEHTASPFHFKA-VEPDELIVPAVHG 105
                 69*****************9963344666655..4455666666666655668999*********************99988777.7778888899*** PP

   3Beta_HSD  96 Trnvleacvkag..vrvlvYtSsaevvg.pnslgeeilngd..Eeleyesl.......hqdaypesKalaEklvlkaNgrtlkngg..rlyTcaLRpag 180
                 T ++l+++ k g  v+++v tSs+ +v  p ++   + ++d  E    e +         + y  sK laE++  +  +   kn g      + L p  
  CDO69084.1 106 TTSILKSAQKYGtsVKRVVITSSCAAVLtPSTEPRVFSEADwnEASIQEVKekgrdaaGPAKYRASKTLAERAAWEFYD---KNKGslSWDLVVLNPPF 201
                 ********99643399******9887761544555556665213322222233333334567***********999999...77762345679****** PP

   3Beta_HSD 181 iyGegdkllv..pllkqlaklglalfkigd......eevlsdrvYvgNvawahilAara 231
                 ++G+  +++   + l+q+a+  +  +  g+       ++ s++v v  +a ah lA ++
  CDO69084.1 202 VFGPTIHEVDvpENLNQSARDWYLNVVKGEldndslANIGSSYVDVRDLALAHTLALQK 260
                 ****8776541156777777666555555422111123446778888999999999886 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.6e-12   4.6e-09       1     209 [.      11     208 ..      11     240 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.6e-12
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TGa G+++  +++ LL+      +   vRa s+++ ++ l   ++++   +++        +vv+ D++++       +++e ++ vd+i h a 
     CDO69084.1  11 VTGANGYIAVWVVKTLLEHGF--SVRGTVRAASKAAHLREL---FKSY--GDKFE-------VVVVEDITKDG------AFDEAVKDVDAIEHTAS 86 
                    7****************9976..899999*99996555555...2222..23343.......56777999876......9**************** PP

                    S-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--..-EEEEEE..GGGTTS-TTT--SSS-H........HHH--EEEETTTCCCHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfde.pykellrvNveGtrevlelakklkkl.kvllhvST..ayvngeregeveekvyeege..keekldederaklkglpntYeqsKalaEkl 186
                      +f++ + +el+ + v+Gt  +l+ a+k     k ++  S+  a++++  e     +v++e +  ++ + + +e+ +++  p +Y  sK laE+ 
     CDO69084.1  87 PFHFKAvEPDELIVPAVHGTTSILKSAQKYGTSvKRVVITSScaAVLTPSTEP----RVFSEADwnEASIQEVKEKGRDAAGPAKYRASKTLAERA 178
                    *****978889*****************8665545666666665555555554....556655545666667777888888899************ PP

                    HHHHHHHH---....EEEEEE-EEE-...- CS
  NAD_binding_4 187 vrearrrsglp....vvivRpsiitg...e 209
                      e  ++++      +v++ p+ + g   +
     CDO69084.1 179 AWEFYDKNKGSlswdLVVLNPPFVFGptiH 208
                    999887644332233689999888885540 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.6   1.5e-12   2.6e-09       1     121 [.      13     156 ..      13     178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.5e-12
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE.--TT-CCHHHHHHTT-SEEEES---TCC.....HHHH....... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevve.gdvtdvedlaealkgadaVvsalggggk.....deeg....... 77 
                     GA+G ++  +vk ll++ g++v+  vR ++k+a+l+       ++ evv+  d+t+  +  ea+k++da+  ++++ +      d          
      CDO69084.1  13 GANGYIAVWVVKTLLEH-GFSVRGTVRAASKAAHLRelfksYGDKFEVVVvEDITKDGAFDEAVKDVDAIEHTASPFHFkavepD--Elivpavh 104
                     9****************.5**********999976644443236777665269*****************999955443334442..13356666 PP

                     .HHHHHHHHHHCT..--EEEEEEETTT.TS..GCGCHHH..HHHHHCCHHHH CS
  NAD_binding_10  78 .aknivdaakeag..vkRfvlvsaigv.gd..evpgefg..ewnkellkayl 121
                      + +i++ a++ g  vkR+v+ s+  +       p+ f+  +wn+  ++++ 
      CDO69084.1 105 gTTSILKSAQKYGtsVKRVVITSSCAAvLTpsTEPRVFSeaDWNEASIQEVK 156
                     6**********76669******997652321122333321145555555554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   1.5e-11   2.7e-08       1     129 [.      10     128 ..      10     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.5e-11
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEE.EEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlk.lhkgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    L+TG +G+i  ++++ Lle g+ v g+vr +s+  ++++++l k+      ++++ ++  D+t   + ++++++v  d++ + A   h +    +P
     CDO69084.1  10 LVTGANGYIAVWVVKTLLEHGFSVRGTVRAASK--AAHLRELFKSY----GDKFEvVVVEDITKDGAFDEAVKDV--DAIEHTASPFHFKA--VEP 95 
                    9***************************99987..56888888754....3455526678*************99..9******9999876..789 PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaSt 129
                    ++ +   v Gt+ +L+ ++++g  + +r++++S+
     CDO69084.1  96 DELIVPAVHGTTSILKSAQKYGT-SVKRVVITSS 128
                    9********************97.5678888887 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   2.9e-09   5.2e-06       1      69 [.       9      82 ..       9     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.9e-09
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEE CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt.....kselakslkeaGvelvkgdlddkeslvealkgvdvvf 69
                +lv+Ga G+++  vv+ ll++g++vr  vR        +el ks  ++  ++v +d+  +   +ea+k+vd++ 
  CDO69084.1  9 VLVTGANGYIAVWVVKTLLEHGFSVRGTVRAAskaahLRELFKSYGDKFEVVVVEDITKDGAFDEAVKDVDAIE 82
                79*****************************9764444455555555556677******************974 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.2e-07   0.00022       1     132 [.       9     132 ..       9     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.2e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtGa G i   +v+++l++  + ++   r+  k  ++++ + +++ +   k+e v+v+ d+++    ++a++  +vd++ h+A   h  +ve
       CDO69084.1   9 VLVTGANGYIAVWVVKTLLEHGFS-VRGTVRAASKAAHLRELF-KSYGD---KFE-VVVVEDITKDGAFDEAVK--DVDAIEHTASPFHFKAVE 94 
                      89*****************99654.444445555556666544.34444...345.779***************..***************998 PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT..-SEEEEEEEGGGS CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieag..vkkvvliStDKAv 132
                        p e i   v+gt+++++ a+++g  vk+vv+ S+  Av
       CDO69084.1  95 --PDELIVPAVHGTTSILKSAQKYGtsVKRVVITSSCAAV 132
                      ..7799****************9864499****9998777 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.2e-06    0.0022       3      72 ..       9      79 ..       7      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-.TTTSHHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqv.Dvtdreevealvekav 72
                vlvtGa + I   ++k+l++ G++v  + r ++k++++ + +k+ g+k+ ++ v D+t+  + +++v+++ 
  CDO69084.1  9 VLVTGANGYIAVWVVKTLLEHGFSVRGTVRAASKAAHLRELFKSYGDKFEVVVVeDITKDGAFDEAVKDVD 79
                9*************************************999999999987665449****99999999875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   1.8e-05     0.033       1     143 [.       7     135 ..       7     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHH.HHTT-EEEE---.-TT-HHHHHHHHHHHHHHSS---EEEE---------T CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliael.ealgaevevvaa.DvsdkdavealleeikaeeppikGvihaAgvlrdkll 97 
                 g +l+tG+ G ++  ++++l+e+g + +  + R a    +++a ++el +++g + evv + D+++  a  +++++++        + h+A  ++ k++
  CDO69084.1   7 GKVLVTGANGYIAVWVVKTLLEHGFS-VRGTVRAA----SKAAHLRELfKSYGDKFEVVVVeDITKDGAFDEAVKDVD-------AIEHTASPFHFKAV 93 
                 678*********************54.33444442....222334444144566554443329****99999999987.......56688888777666 PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH-- CS
          KR  98 eemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgs 143
                 e       ++++ p v+G+  + +  ++  +s++ +v++SS+a++l  
  CDO69084.1  94 E------PDELIVPAVHGTTSILKSAQKygTSVKRVVITSSCAAVLTP 135
                 4......35678888888887777777778888889999999888765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00015      0.26       6      64 ..      18      79 ..      13      86 .. 0.89
   2 ?   -1.9   0.0       1.1   2.1e+03     103     131 ..     103     131 ..      91     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..E.EE--TTSHHHHHHHHHHHH CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneeakkrveelaeelgae..v.lecDVtdeeqvealveevv 64
                  I+  ++k+l e+G +v  t +  +++++++el +++g +  v +  D+t++ + +++v++v 
    CDO69084.1 18 IAVWVVKTLLEHGFSVRGTVRAASKAAHLRELFKSYGDKfeVvVVEDITKDGAFDEAVKDVD 79
                  888899*******************************885536999************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                   THHHHHHHHHHHHHCTSCCEEEEEEEGGG CS
  adh_short_C2 103 lyslfllakaalplmkeggsivnlssvga 131
                   ++++++++k a+++ ++  ++v +ss +a
    CDO69084.1 103 VHGTTSILKSAQKYGTSVKRVVITSSCAA 131
                   68889999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2312.84
//
Query:       CDO69085.1  [L=727]
Description: hypothetical protein BN946_scf184992.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-50  171.4   0.0    3.5e-50  170.8   0.0    1.3  1  Pkinase         Protein kinase domain
    6.6e-25   87.9   0.0    3.3e-16   59.4   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    4.6e-05   22.4   0.0    0.00019   20.4   0.0    1.9  3  Pkinase_fungal  Fungal protein kinase
      0.001   19.1   0.2     0.0045   16.9   0.2    1.8  2  APH             Phosphotransferase enzyme family
     0.0015   18.2   0.0       0.29   10.7   0.0    2.4  2  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0093   15.3   0.0      0.052   12.9   0.0    2.0  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
        0.1   12.4   0.7        1.2    9.0   0.0    2.8  3  SH3_16          Bacterial dipeptidyl-peptidase Sh3 domain
       0.17   11.2   0.0       0.31   10.4   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   1.6e-53   3.5e-50       2     264 .]     148     432 ..     147     432 .. 0.94

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 1.6e-53
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 ++++ lG+G+ GkV+ +  + +g  +A+K++kk++ k ++   ++ E  ++k+l    +  +++ +fe++d++yl+ ++ + g+l+ +l + g +++ e
  CDO69085.1 148 RVIQILGRGAQGKVLLVQYQGDGYLYALKMVKKSSLKLRDYPLAFLEQDLMKELAgNLFCAQIKASFEDHDHFYLLSDFYPAGDLNCVLYKPGGVDPIE 246
                 67899*********************************9999*************8889999************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..............................BCTTTSCGGGS-HHH CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..............................ltsfvgtseYlAPEv 168
                 ++ +++q++ +l+ lH+++iiHrD+Kp+N+L+ ++ el i+DFGl++ + ++++                              ++ ++gt  Y+APE+
  CDO69085.1 247 LRLFCAQLVIALDELHRQRIIHRDIKPSNVLVTRDHELVIADFGLSRAFGRTTDqqvwrqreylntpacsdrssegatgepvdvTQRQCGTLPYMAPEI 345
                 ***************************************************9999******************************************** PP

                 HTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 169 lkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                   + ++s ++D+++lGv++ye+l +k pf    ++  ++k++ +     +i   +  +l+ +++i  +a+dll  +l+kd + R++ e+++qhp++
  CDO69085.1 346 YCGVGFSYAADIFALGVTFYEMLHRKLPFGIAYENR-NSKDVAR-----RI---VCGSLEVNEDIHADARDLLYMMLEKDASMRPSLEQIKQHPWF 432
                 ******************************554444.3344443.....23...34578999*********************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.5e-19   3.3e-16       3     159 ..     149     301 ..     147     315 .. 0.85
   2 !   26.4   0.0   1.7e-09   3.9e-06     166     257 ..     335     428 ..     323     429 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.5e-19
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  + + lG+Ga GkV   +++     + +  a+K++k+++ + +     + e ++mk+l  +    ++ +   ++++ +++ ++ + GdL+  L k    
   CDO69085.1 149 VIQILGRGAQGKVLLVQYQ----GDGYLYALKMVKKSSLKLRdYPLAFLEQDLMKELaGNLFCAQIKASFEDHDHFYLLSDFYPAGDLNCVLYKP--G 240
                  6789***************....889999*****8887776514444569*******666666777777779999******************98..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey 159
                   ++  +l  f++q+  +++ L++++++Hrd+   NvL+++++   i+DfGL+r+  ++ ++
   CDO69085.1 241 GVDPIELRLFCAQLVIALDELHRQRIIHRDIKPSNVLVTRDHELVIADFGLSRAFGRTTDQ 301
                  9****************************************************99443333 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.7e-09
                  TSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGT....TTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 166 klpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp....ypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                     + +mapE+     f+ ++D+++ Gv+ +E++   + p    y++ ++++v++++  g  le +e+++++  +l+   +e+d++ Rp+++++ +
   CDO69085.1 335 CGTLPYMAPEIYCGVGFSYAADIFALGVTFYEMLH-RKLPfgiaYENRNSKDVARRIVCG-SLEVNEDIHADARDLLYMMLEKDASMRPSLEQIKQ 428
                  45678*****************************9.555545558888888999988776.5899999*************************976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.88     2e+03     261     300 ..      31      70 ..       9      73 .. 0.69
   2 !   20.4   0.0   8.4e-08   0.00019     314     397 ..     253     357 ..     243     365 .. 0.81
   3 ?   -2.3   0.0      0.62   1.4e+03     196     248 ..     380     450 ..     378     516 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.88
  Pkinase_fungal 261 sskkvekrsvdssvstskrsrlenrvhrrlvispvGkpie 300
                     +s+ v+++ v+    +sk+ r+e+ +h+ +v+ ++G+ ++
      CDO69085.1  31 TSDCVKTEAVQLVADASKHIRPEENIHVKMVFDEAGEMVY 70 
                     4444555555555588888889999999999999998765 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 8.4e-08
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgare...........................rtGTleFm 381
                     + + ++ +L+  ++i+HrDi   N+l+t     ++++ +++D+ l    ++++ +++ r+                           + GTl++m
      CDO69085.1 253 QLVIALDELH-RQRIIHRDIKPSNVLVT-----RDHELVIADFGLSRAFGRTTDQQVWRQreylntpacsdrssegatgepvdvtqrQCGTLPYM 341
                     6689999***.9****************.....9999*************9777774444556666666677777777777777777******** PP

  Pkinase_fungal 382 aievlkgeeHsyrhDL 397
                     a e+  g   sy  D+
      CDO69085.1 342 APEIYCGVGFSYAADI 357
                     *999887777777765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.62
  Pkinase_fungal 196 ergvegvarlvahedveekdddi.aeiRkgldvtkaekfrskrkvvsssssqe...................l 248
                     +r+ ++var +   ++e  ++di a++R+ l +  + k  s r +++++++++                   +
      CDO69085.1 380 NRNSKDVARRIVCGSLE-VNEDIhADARDLLYMMLE-KDASMRPSLEQIKQHPwfasinfdelshrerprplT 450
                     57778888888888775.666666999998888777.556667777777666666666665554444433330 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.77   1.7e+03       4      73 ..     152     226 ..     149     233 .. 0.73
   2 !   16.9   0.2     2e-06    0.0045     158     196 ..     259     292 ..     236     295 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.77
                 EE--.SSCEEEEEEETT.-.-EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEE CS
         APH   4 elsggasnrtylvttpa.g.ryvlrrnppa....raaeeirrevallrlLakagvpvPevlagdtddeeigllfal 73 
                  l+ ga  ++ lv+  + g  y+l+ + ++    r ++ +  e++l++ La++ + ++++ a  +d+++ +ll+ +
  CDO69085.1 152 ILGRGAQGKVLLVQYQGdGyLYALKMVKKSslklRDYPLAFLEQDLMKELAGNLF-CAQIKASFEDHDHFYLLSDF 226
                 566677777777777776677777766666555777788889999******9988.99999988888887776655 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2e-06
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 ++     +++++H+D++p N+lv+ +d+++  + Df+++
  CDO69085.1 259 DE---LHRQRIIHRDIKPSNVLVT-RDHEL-VIADFGLS 292
                 33...4589***************.55555.27799876 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00013      0.29      22      57 ..     145     182 ..     137     208 .. 0.84
   2 !    4.9   0.0    0.0078        17     181     204 ..     254     277 ..     248     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
        FTA2  22 kdiefleyLgkglhsiVlkvkirgk..eYALKlFrfle 57 
                 +d++ +++Lg+g+++ Vl v+++g    YALK+ ++ +
  CDO69085.1 145 ADFRVIQILGRGAQGKVLLVQYQGDgyLYALKMVKKSS 182
                 68999*****************998889****987764 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0078
        FTA2 181 llrdlkklhklgIvvrDlkeenyi 204
                 l+  l++lh++ I++rD+k++n++
  CDO69085.1 254 LVIALDELHRQRIIHRDIKPSNVL 277
                 56679***************9976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.3e-05     0.052     151     260 ..     252     384 ..     246     420 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..................kgfaPpEllgsrgg...ytrkn...k 224
                  +ql+    +L+ + ++h ++++ n+l  ++  l++ +f+  +  g      +v                   ++ +P +++ ++ g   y   +    
   CDO69085.1 252 AQLVIALDELHRQRIIHRDIKPSNVLVTRDHELVIADFGLSRAFGRTTD-QQVWrqreylntpacsdrssegATGEPVDVTQRQCGtlpYMAPEiycG 348
                  677778899*****************************74443343333.2332334477777889999999999******99998888766431225 PP

  Kinase-like 225 tkmthkldaWqlGlviyriwclklPltlateeakee 260
                  + ++++ d  +lG++ y +  +klP++ a e+ +++
   CDO69085.1 349 VGFSYAADIFALGVTFYEMLHRKLPFGIAYENRNSK 384
                  7899***********************999887765 PP

>> SH3_16  Bacterial dipeptidyl-peptidase Sh3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.9     2e+03      20      39 ..     150     171 ..     147     172 .. 0.76
   2 ?    9.0   0.0   0.00054       1.2       3      27 ..     311     336 ..     310     341 .. 0.88
   3 ?   -0.2   0.0       0.4   9.1e+02       1      15 [.     648     663 ..     648     664 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.9
                 EEEEEEE.ET.EEEEEETTT-- CS
      SH3_16  20 lrvleea.dg.wawVqlceDgY 39 
                  ++l +  +g  + Vq   DgY
  CDO69085.1 150 IQILGRGaQGkVLLVQYQGDGY 171
                 56666666777899*******9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00054
                 SSTT--SEEEEE-TT-EEEEEEEE.E CS
      SH3_16   3 dsPdcaelaTQalaGrhlrvleea.d 27 
                 + P+c+ + ++ ++G++++v++++ +
  CDO69085.1 311 NTPACSDRSSEGATGEPVDVTQRQcG 336
                 579******************99866 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.4
                 EESSTT.--SEEEEE- CS
      SH3_16   1 LydsPd.caelaTQal 15 
                 ++d+P+ +a+++T al
  CDO69085.1 648 ILDAPSrDATRVTNAL 663
                 579**********997 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014      0.31     130     181 ..     257     307 ..     228     312 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDl..dkarlrlr.adrwrek 181
                 +  +lhr  + H+d+ + n+l+  ++    e+++ D+   +a  r++ ++ wr++
  CDO69085.1 257 ALDELHRQRIIHRDIKPSNVLVTRDH----ELVIADFglSRAFGRTTdQQVWRQR 307
                 5679*******************999....8888887225666777767788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5240.28
//
Query:       CDO69086.1  [L=577]
Description: hypothetical protein BN946_scf184992.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-34  117.2   0.0    1.5e-33  116.1   0.0    1.6  2  Pro-kuma_activ  Pro-kumamolisin, activation domain
    1.6e-07   30.9   0.3    2.6e-07   30.2   0.3    1.2  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   1.7e-37   1.5e-33       4     142 .]      46     184 ..      43     184 .. 0.97
   2 ?   -3.8   0.0       1.6   1.4e+04      59      73 ..     431     445 ..     424     454 .. 0.66

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.7e-37
  Pro-kuma_activ   4 tkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqve 98 
                     +  g+a+++t+l++ri+L+q+  + + d+l  vsdp s +yg+hl+++e a+l ap++e+++aV +wL ++g++a+  ++ ++w++++++v++++
      CDO69086.1  46 SLAGPAPADTTLKLRIALSQKSPDAVVDALYSVSDPTSGKYGQHLSKDEAAQLAAPNPESVSAVNSWLSEHGLSATPLTPAGDWLELQVNVSKAN 140
                     567999***************************************************************************************** PP

  Pro-kuma_activ  99 rllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     +ll+++f+ ++  + ++  +r+  ys+P+ lk +vd+ihpt++f
      CDO69086.1 141 TLLGANFSVFNYGSYGKAAIRTLAYSIPAGLKGHVDLIHPTTTF 184
                     **********9668899************************997 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.6
  Pro-kuma_activ  59 pseeaidaVrnwLes 73 
                     + + +++aV ++L++
      CDO69086.1 431 APSYQTSAVASYLTQ 445
                     444458889999987 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.3   2.9e-11   2.6e-07     123     267 ..     339     509 ..     299     523 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.9e-11
                   SEEEE-EE.SCETTCHHCHHHHHH..HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES.......TTSSB-TT--B-TT. CS
                   xxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
  Peptidase_S8 123 dvinmslg.estslpktgrsieal..ainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt.......tegkiapfSsrGpss 209
                   +v+  s+g  ++slp + ++  +l  a+ ++   +gv + ++aG +g   ++ +++    +ps++  v++vg+++        eg+   fS++ p+ 
    CDO69086.1 339 QVLTTSYGmSEDSLPFNLTD--KLckAYAQLG-ARGVSILFAAGDSGVGCQENSTSFAPTFPSNCPYVTSVGGTQgyapeeaWEGSSGGFSNYYPAP 432
                   47778888533334433333..3333888888.78************5444445555556699***************9999555556666666655 PP

                   ......-EEEE-S-.CCCCCCCCCHHHTTTHH......................EEEE-SHHHCHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 210 dgklkpdivapGgn.ivstwsrqsnnsaglss......................yqsmsGTSmAsPnaagaaAlllsalpk 267
                        ++ +a ++     ++s ++n++ g+ +                      + s +GTS+AsP  a+++All ++l +
    CDO69086.1 433 S----YQTSAVASYlTQLSASSRANSTLGRFNesgrgfpdvsskadnflvwengTASLYGTSAASPTFASVIALLNDRLAQ 509
                   3....5555555553222223333333333335556666667777777777777899******************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4034.74
//
Query:       CDO69087.1  [L=515]
Description: hypothetical protein BN946_scf184992.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-09   37.6   3.1    4.2e-09   36.2   3.1    1.8  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   3.1   2.3e-13   4.2e-09       1      47 [.       4      53 ..       4      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.3e-13
  F-box-like  1 isrLPdEiLlqIFsyLppsd.....LlrlalVCrrWrrvaldtplLWrrlvl 47
                is LP+E+L+ +F   + +d     +lr+  VCr W+++a++ + LW++l++
  CDO69087.1  4 ISTLPTELLVSVFL--DVRDecpttWLRVLSVCRTWYEIACSAAPLWSKLTF 53
                689**********4..544444444************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3552.10
//
Query:       CDO69088.1  [L=85]
Description: hypothetical protein BN946_scf184992.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 631.47
//
Query:       CDO69089.1  [L=392]
Description: hypothetical protein BN946_scf184992.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.7  24.4    2.4e-17   62.9  23.7    1.7  2  MFS_1     Major Facilitator Superfamily
    1.6e-16   59.9   4.6    1.6e-16   59.9   4.6    1.7  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9  23.7   2.6e-21   2.4e-17     109     344 ..       2     284 ..       1     290 [. 0.86
   2 ?   -1.9   0.0      0.14   1.2e+03     210     228 ..     343     361 ..     316     377 .. 0.60

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.6e-21
       MFS_1 109 liadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee................... 188
                 +++d+++ +erg ++gl++++++l+ ++gp++gg+l+s + Wr++fy++ +++ +a  ++l++l  + p+    ++                       
  CDO69089.1   2 VVSDLVSLRERGTYNGLIGLTWALACAIGPVVGGALSSEGQWRWLFYLNLPICGVATAMVLVFLKLPTPPGTLREKLGHMdwignflviasttcvglgl 100
                 68999***************************************************88777777666666666655555577***************** PP

       MFS_1 189 ................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllagllla 251
                                                 +++++ p+vp + +l ++  + +  i  +++ +++ ++ ++lp+y q+ ++ s    g++++gl+l+
  CDO69089.1 101 twggikfpwssakvlvplivgllglaffilyeAKWARNPIVP-LMLLQNRTSI-SGYIQTFINPLVVLAIAYYLPTYYQSCRDASpvrsGVYILGLTLG 197
                 **********99999999999999999999999999999999.7777777766.588888888999999********9*******99999999999999 PP

       MFS_1 252 llalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfnta 344
                 l+ +++a +  ++  + + +  r+++++a ++ +++   +  + + +  + ++ + +l G+g+g+ + s l    +l     +g++s + ++a
  CDO69089.1 198 LAPAIVATG--VSVSITKVY--RPQIWVAWVIYIVGMGVYTTMRADTRLAETIGIPILTGVGAGMLYLSRLLTYFNLS--GLNGRLSQVWGIA 284
                 999999877..555555443..669*********************9999***************9888777777777..6666666666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.14
       MFS_1 210 willialllfffgfsgllt 228
                 w +++++l ++++ s++++
  CDO69089.1 343 WKVMVGILAIGLISSLFMA 361
                 3333333333333333333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   4.6   1.8e-20   1.6e-16     177     309 ..      26     149 ..       2     177 .. 0.83
   2 ?   -2.3   0.1      0.12   1.1e+03     165     202 ..     191     228 ..     183     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.8e-20
       TRI12 177 vtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakvig 275
                 +  +++p +g  l+ +g+wrw+fy+ + +  +a  +++v+   p+         + re+l ++dwig +lvi+ ++ + lg++wgg  + pw sakv+ 
  CDO69089.1  26 A-CAIGPVVGGALSSEGQWRWLFYLNLPICGVATAMVLVFLKLPT------PPGTLREKLGHMDWIGNFLVIASTTCVGLGLTWGGI-KFPWSSAKVLV 116
                 3.3489*******************************99877665......456789*****************************6.68********9 PP

       TRI12 276 lissglgslvvfalyevygkpvrpivppalfkdt 309
                  +  gl  l  f lye      +pivp  l+++ 
  CDO69089.1 117 PLIVGLLGLAFFILYEAK-WARNPIVPLMLLQNR 149
                 999*************74.467899999888764 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.12
       TRI12 165 flgllivsipvvvtsglspylgqrlaiqgswrwifyiy 202
                 +lgl +  +p++v +g+s  + +    q    w++yi 
  CDO69089.1 191 ILGLTLGLAPAIVATGVSVSITKVYRPQIWVAWVIYIV 228
                 57888888888888888888888888777777887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2627.10
//
Query:       CDO69090.1  [L=315]
Description: hypothetical protein BN946_scf184992.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-49  165.9   0.0      1e-48  165.7   0.0    1.0  1  Hydrolase_4    Serine aminopeptidase, S33
    4.5e-15   56.9   0.2    5.5e-15   56.6   0.2    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.3e-10   39.7   0.1    6.6e-10   39.1   0.1    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
    4.7e-05   23.0   0.0    0.00015   21.3   0.0    1.7  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9
    0.00028   20.1   0.0    0.00044   19.4   0.0    1.4  1  DUF1749        Protein of unknown function (DUF1749)
     0.0012   18.7   0.0      0.082   12.6   0.0    2.4  3  PGAP1          PGAP1-like protein
      0.002   18.0   0.1      0.011   15.6   0.0    2.0  2  Lipase_3       Lipase (class 3)
     0.0045   16.8   0.0        7.8    6.2   0.0    3.0  3  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.051   13.0   0.0        5.8    6.3   0.0    2.4  2  Peptidase_S9   Prolyl oligopeptidase family
      0.051   13.1   0.0      0.081   12.5   0.0    1.3  1  DUF3089        Protein of unknown function (DUF3089)
       0.11   12.6   0.0       0.26   11.4   0.0    1.6  2  Thioesterase   Thioesterase domain


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.0   6.4e-52     1e-48       2     239 .]      32     288 ..      31     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 6.4e-52
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGlial 91 
                  +++av++++HG+aeh+gry+   ++ a +G+ v+ +D+rG+Gr++        g     +++++ ++D++  ++ +++++p+lp+fl+GhSmGG+++l
   CDO69090.1  32 SAQAVLLFIHGFAEHIGRYEWAHAQCAIKGITVFSFDQRGFGRTAldsshkskGSAYGKTDLHSQMRDIEWWLKYLRNQNPHLPIFLMGHSMGGALVL 129
                  5799**********************************************99988888999************************************* PP

  Hydrolase_4  92 lyl...lrypd........kvaglilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelld 178
                  ++    +   +         ++g+i s+P++  + +  +++ +++l   l+k++p++++ ++l +++lsrdp+v+aa+eadplv +k +++ l ++l+
   CDO69090.1 130 AFPtrtT---AppakesaeLLSGVIASSPLVLQHVS--TSRPVRFLVDNLSKIAPNMPFDASLPNEFLSRDPAVIAALEADPLVMQKGSLKCLSDMLN 222
                  *996541...223455554778*********99866..89999******************************************************* PP

  Hydrolase_4 179 amkrleeraakit...lPllllhGeaDkv..vdpeasrelyerlgskdktlklypglyHellnEpd 239
                  ++++l er+       lP+l++hG+aDkv  ++ +a+++l++rl++ dk +++ + +yHel++Epd
   CDO69090.1 223 VGEELYERDYLNWpkdLPVLFVHGDADKVrvTSFGAAQDLFNRLQAMDKIFETVKDAYHELVHEPD 288
                  ******9987554677***********8533788899***************************97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.2   3.4e-18   5.5e-15       1     216 [.      37     289 ..      37     293 .. 0.60

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 3.4e-18
                    EEEE--GC.......GCHHHHHHHHCCTCEEEEE--TTSTS-..GGCS........--HHHC....HHHHHHHCCTT....TTSEEEEEETCHHHH CS
  Abhydrolase_6   1 vlllHGagss..assWlvapLaallaagvhvlapDlpGhGrs..dppp........ldledl....adlaalldelaa..gggpvvlvGHSlGGal 78 
                    +l++HG+  +  ++ W++a+    + +g++v+++D +G+Gr+  d           ++ +dl    +d++  l  l++   + p++l+GHS+GGal
     CDO69090.1  37 LLFIHGFAEHigRYEWAHAQC---AIKGITVFSFDQRGFGRTalD--SshkskgsaYGKTDLhsqmRDIEWWLKYLRNqnPHLPIFLMGHSMGGAL 127
                    79****775556777743333...4566999*********44331..12223332233333222226666666666668777788*********** PP

                    HHH.....HHHCC.......EEEEES-........----TTTS----TTHHHHHH.TT-C........CCCHCCHS-HSCCCCHHH.....CCCCH CS
  Abhydrolase_6  79 ala.....aapla.....lvvgvlldppp......talpagllaaalelllalla.llrl........lawlsreplprlfladed.....adaaw 144
                    +la     +ap a     l++gv+ ++p       t+ p ++       l   l+  ++          ++lsr+   +  +a ++     ++   
     CDO69090.1 128 VLAfptrtTAPPAkesaeLLSGVIASSPLvlqhvsTSRPVRF-------LVDNLSkIAPNmpfdaslpNEFLSRD---PAVIAALEadplvMQKGS 213
                    ***666555555599999889966666443333333333333.......33222212222000111223555533...222221221111334555 PP

                    CHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-C.......HHHHCHHCCCHSTTEEETCE...SSS.-HHHHSHHH CS
  Abhydrolase_6 145 rarlarlaallaglgllpaaawadlpvpllvlggeDp.......lvprllerllaqagarlpvvlpgaGH.lphleepde 216
                       l++++     l+++ + +w+  ++ l+v+g++D+       + ++l+ rl a  ++ + +++++a H l+h+  pd 
     CDO69090.1 214 LKCLSDMLNVGEELYERDYLNWPKDLPVLFVHGDADKvrvtsfgAAQDLFNRLQA-MDKIF-ETVKDAYHeLVHE--PDG 289
                    55556666666677788899*********99788888999999999999999999.99999.********66665..544 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   4.1e-13   6.6e-10       2     123 ..      36     173 ..      35     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 4.1e-13
                    EEEEE-STTT..CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.....CHH.......SHHHHHHHHHHHHHHCTTSSEEEEEETHHH CS
  Abhydrolase_1   2 vlvilhGlpg..ssdvwaerglapaLakdgfdvillDlrGvgySspapacin....ddy.......gtasvaddldrildalgddkltlvGhSmGG 84 
                    vl+++hG+++  + + wa    a+   k g +v+ +D+rG+g++   ++  +    + y       ++ +++++l++++++ +  ++ l+GhSmGG
     CDO69090.1  36 VLLFIHGFAEhiGRYEWAH---AQCAIK-GITVFSFDQRGFGRTALDSS--HkskgSAYgktdlhsQMRDIEWWLKYLRNQNPHLPIFLMGHSMGG 125
                    79********877777777...444444.*************9843333..3447744444444556666999999******************** PP

                    HHHHHHHHHH........GGGEEEEEEESE.CSSCCHHHHHHHHHHHH CS
  Abhydrolase_1  85 mialayaaey........perVkalvllga.idpaaslieaqrqqaks 123
                    +++la+  +          e  +++++ ++ +  + s+++  r+ + +
     CDO69090.1 126 ALVLAFPTRTtappakesAELLSGVIASSPlVLQHVSTSRPVRFLVDN 173
                    ****99777666655555555555555555655555555555555555 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   9.5e-08   0.00015      15     110 ..      30     130 ..      22     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.5e-08
      DUF900  15 ksaakeilvfvhGynns...Fedavlraaq..iaddlknqgaivvfsWPsagklldynyDresaeasrdalekllrylatkksakkihllaHSmGtwlv 108
                  s+a+ +l+f+hG+ ++   +e a  + a+  i+ ++  q  +   +  s+ k  +  y ++  +    ++e  l+yl++++++  i l+ HSmG  lv
  CDO69090.1  30 ASSAQAVLLFIHGFAEHigrYEWAHAQCAIkgITVFSFDQRGFGRTALDSSHKSKGSAYGKTDLHSQMRDIEWWLKYLRNQNPHLPIFLMGHSMGGALV 128
                 578899********87533355554444432255555555555556677888888899999999999*****************************999 PP

      DUF900 109 le 110
                 l 
  CDO69090.1 129 LA 130
                 75 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.7e-07   0.00044      66     143 ..      79     156 ..      18     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.7e-07
     DUF1749  66 lqlsssyggwGtgsLkrDaeeieklveYlkktksGeekkekvvlmGHstGsqdvlyYltssnerd....rekvdgailqapv 143
                    +s  +++G + L+    +ie  ++Yl+++    + +  + lmGHs G   vl + t++   +    +e ++g i+ +p 
  CDO69090.1  79 SSHKSKGSAYGKTDLHSQMRDIEWWLKYLRNQ----NPHLPIFLMGHSMGGALVLAFPTRTTAPPakesAELLSGVIASSPL 156
                 344566789***********************....46789****************9998663344445555666655554 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       6.3     1e+04       4      13 ..      34      43 ..      33      45 .. 0.79
   2 !   12.6   0.0     5e-05     0.082      84     136 ..     107     163 ..      86     181 .. 0.68
   3 ?    3.5   0.0     0.031        50       5      27 ..     239     260 ..     236     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.3
       PGAP1  4 GipVlFvpGn 13
                +++ lF++G 
  CDO69090.1 34 QAVLLFIHGF 43
                57889***96 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5e-05
       PGAP1  84 sssekeptsviliGHSmGGivaraaltlkn..yikqsvnti..ltlasPhalpplsf 136
                   ++++   ++l+GHSmGG +  a  t  +   +k+s + +  +  +sP++l+ +s+
  CDO69090.1 107 LRNQNPHLPIFLMGHSMGGALVLAFPTRTTapPAKESAELLsgVIASSPLVLQHVST 163
                 467788889**********98776655544333344444333355567776666655 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.031
       PGAP1   5 ipVlFvpGnagsykqvrslAsea 27 
                  pVlFv+G a  ++ v s++++ 
  CDO69090.1 239 LPVLFVHGDADKVR-VTSFGAAQ 260
                 7*******998776.56666554 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.6e-06     0.011      49      85 ..      98     134 ..      39     160 .. 0.81
   2 ?   -0.2   0.0      0.49     8e+02      95     134 ..     249     290 ..     241     296 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHH CS
    Lipase_3  49 eqvlkelkrllekypeysivvtGHSLGgalAlLaald 85 
                  +++  lk l +++p + i + GHS+Ggal l +++ 
  CDO69090.1  98 RDIEWWLKYLRNQNPHLPIFLMGHSMGGALVLAFPTR 134
                 55666789999******************98877665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.49
                 --EEEEEES----.B-H..HHHHHHHT-TTEEEEEEEETT--G CS
    Lipase_3  95 kkvtvvtfGqPrv.gnk..efaklvdsqlnkkvlrvvntnDiv 134
                 +kv+v +fG+++  +n+  ++ k + +++++ ++  v++ D v
  CDO69090.1 249 DKVRVTSFGAAQDlFNRlqAMDKIF-ETVKDAYHELVHEPDGV 290
                 6778888888764244311333333.36666799999999877 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.21   3.4e+02      10      23 ..      30      43 ..      24      64 .. 0.77
   2 !    5.8   0.0    0.0065        11     104     143 ..     113     160 ..      83     172 .. 0.66
   3 !    6.2   0.0    0.0048       7.8     152     202 ..     234     288 ..     221     303 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.21
                   SS---EEEEEE--T CS
  Abhydrolase_2 10 kdkaqavviflHGl 23
                   ++ aqav++f+HG 
     CDO69090.1 30 ASSAQAVLLFIHGF 43
                   56799********7 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0065
                    GGGEEEEEETHHHHHHHHHHHT-SS........--SEEEEES---TTG CS
  Abhydrolase_2 104 ssriiigGFSqGaalalylaltlpk........klggivafsgalpls 143
                       i+++G S+G+al+l+    ++          l+g++a s  ++++
     CDO69090.1 113 HLPIFLMGHSMGGALVLAFPTRTTAppakesaeLLSGVIASSPLVLQH 160
                    4469***********998544333322222222555555555554444 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0048
                    GGGGG-EEEEEEETT-SSS-HHHHHH..HHHHHHTTS-..GEEEEEETT--SS-- CS
  Abhydrolase_2 152 avtkklpilqiHgeeDpvvplalgka..akevlkkllk..kvelksyeglaHsid 202
                    + +k+lp+l +Hg+ D+v   ++g+a  + + l+++ k  +  ++ y++l H+ d
     CDO69090.1 234 NWPKDLPVLFVHGDADKVRVTSFGAAqdLFNRLQAMDKifETVKDAYHELVHEPD 288
                    5679************997777775511445666666666666666666666655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0036       5.8      45      83 ..      97     133 ..      50     137 .. 0.68
   2 ?    4.4   0.0     0.014        22     139     177 ..     234     274 ..     215     305 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0036
                   HHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHH CS
  Peptidase_S9  45 fdDfiaaaealakeg.yvdserlaitGgSyGGyltgaaln 83 
                   ++D+  ++++l +++       ++++G+S GG l++a  +
    CDO69090.1  97 MRDIEWWLKYLRNQNpHL---PIFLMGHSMGGALVLAFPT 133
                   455555556665555333...699***********98755 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
                   G-----EEEEEEETT-S.SS-.THHHHHHHHHHH--S-SEE CS
  Peptidase_S9 139 nvkaypplLlihGlaDd.rvp.paealklvaaLqkkgknvl 177
                   n  ++ p+L++hG+aD+ rv+ +  a  l+++Lq  +k ++
    CDO69090.1 234 NWPKDLPVLFVHGDADKvRVTsFGAAQDLFNRLQAMDKIFE 274
                   4447889*********8444415667779999997666554 PP

>> DUF3089  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-05     0.081      83     127 ..     103     148 ..      77     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
     DUF3089  83 feaylakenkgrPiiLaGhsQGallllrLlkeeiagkp.lqkrLva 127
                 + +yl+++n   Pi L+Ghs G++l+l + ++  a  +  +++L +
  CDO69090.1 103 WLKYLRNQNPHLPIFLMGHSMGGALVLAFPTRTTAPPAkESAELLS 148
                 889*********************9998877766665555556655 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.26      57      79 ..     105     127 ..      94     135 .. 0.88
   2 ?   -3.1   0.0       4.1   6.8e+03     134     146 ..     259     271 ..     225     285 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                   HHHHHH-SSSSEEEEEETHHHHH CS
  Thioesterase  57 ealrqiqpegPyalfGhSlGgll 79 
                   + lr ++p+ P  l+GhS+Gg+l
    CDO69090.1 105 KYLRNQNPHLPIFLMGHSMGGAL 127
                   569999***************87 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.1
                   CCTTTHCCHHHHH CS
  Thioesterase 134 peelledeellse 146
                   +++l +  +++  
    CDO69090.1 259 AQDLFNRLQAMDK 271
                   3333333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2047.11
//
Query:       CDO69091.1  [L=134]
Description: hypothetical protein BN946_scf184992.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.079   12.5   0.1       0.09   12.3   0.1    1.1  1  DUF368    Domain of unknown function (DUF368)


Domain annotation for each model (and alignments):
>> DUF368  Domain of unknown function (DUF368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     5e-06      0.09      43      96 ..      15      70 ..       3      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-06
      DUF368 43 arlkaalkkinlkfLlalvlGivvsilvlakllsyllekypillwsl..ffGlila 96
                ++l++    i   +Ll++ +G+++ ++ +a+l++y+ +  ++++ ++  ++G + a
  CDO69091.1 15 TGLRKSNDVITKLILLTVTTGMLTTLFNIADLIAYITHPDNLYVLCFnfMLGKLYA 70
                555666666777899*********************97777777665115555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 962.30
//
Query:       CDO69092.1  [L=486]
Description: hypothetical protein BN946_scf184992.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-25   89.2   2.8    8.6e-17   61.7   0.5    2.6  3  BCS1_N           BCS1 N terminal
    1.3e-11   45.0   0.0    1.8e-10   41.4   0.0    2.4  1  AAA              ATPase family associated with various cellul
    6.3e-05   23.3   0.1    0.00014   22.2   0.1    1.5  1  YlbE             YlbE-like protein
    0.00065   19.5   0.0     0.0011   18.7   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0083   16.5   1.4      0.013   15.9   0.2    2.2  3  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.013   14.7   0.0       0.05   12.7   0.0    1.8  2  DUF815           Protein of unknown function (DUF815)
      0.016   15.4   0.0       0.06   13.5   0.0    2.0  2  AAA_33           AAA domain
      0.016   15.2   0.0       0.18   11.8   0.0    2.2  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.022   14.0   0.0      0.042   13.1   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.06   13.1   0.0        0.1   12.4   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
        0.1   12.1   0.6       0.36   10.4   0.0    2.1  3  AAA_25           AAA domain
       0.16   12.2   0.0       0.44   10.8   0.0    1.7  1  AAA_22           AAA domain
       0.17   12.3   0.0        5.8    7.3   0.0    2.5  2  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.5   6.2e-20   8.6e-17       1     107 [.      57     154 ..      57     155 .. 0.88
   2 !   29.1   0.1   6.2e-10   8.5e-07     133     187 .]     153     205 ..     152     205 .. 0.95
   3 ?   -2.6   0.0       3.4   4.7e+03     126     146 ..     265     285 ..     234     287 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 6.2e-20
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaqpasrrsrelsvetrtksrssdssaeedededeeedgkkkkplrylPavgtthl 99 
                 +gal++++rr+l++++++++r+f+v+++++ dD++ dw+++Wls++++ + +r+++v+tr +  +        +  d+++  ++ +++ +lP+ ++t+ 
  CDO69092.1  57 VGALVEVLRRSLRTAWERFTRSFWVTATFEFDDNVSDWLMYWLSKEKVFQFARDIEVSTRGGMID--------DLGDNDD-PDADYNVVFLPSTEQTYS 146
                 699*********************************************************88885........2222222.135789************ PP

      BCS1_N 100 frykgrll 107
                 ++yk+r+l
  CDO69092.1 147 MWYKRRML 154
                 *****987 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 6.2e-10
      BCS1_N 133 clgrsreilkeLleearelalkkqegktviyraaagsggeWrrvasRpkRplstV 187
                 +l+rs+++l++L++ear+++++++e+ + +    a++g +Wrr+a + kRp s+V
  CDO69092.1 153 MLARSPALLRDLVREARKAYKAATEDLIEVSV--AEDGDQWRRIAMQAKRPPSSV 205
                 799*****************************..458****************99 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.4
      BCS1_N 126 eetltltclgrsreilkeLle 146
                  + l+lt+ g + + lk+L++
  CDO69092.1 265 VNILSLTVSGLDDNSLKSLIS 285
                 456999**********99997 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.3e-13   1.8e-10       2     131 ..     241     349 ..     240     350 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.3e-13
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 ll+G pG GKT+l++ va elg  v++l++ +s l         ++++ l++++ +    +i+++++ida +++               + + + + + 
  CDO69092.1 241 LLHGAPGAGKTSLIHTVAGELGlnVNILSLTVSGLD-------DNSLKSLISNLPK---SCIILMEDIDAAFTRT--------------IKRNVADPEA 315
                 9*******************8633667777777777.......9999999998754...3***********9988..............5555666666 PP

                 SSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  99 keskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++ +      tn++  ldpallr gR+d ++e+ 
  CDO69092.1 316 HSTPARGAFSTNSYGALDPALLRpGRLDFHVEFH 349
                 667789999********************99986 PP

>> YlbE  YlbE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1     1e-07   0.00014       9      44 ..     144     181 ..     143     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1e-07
        YlbE   9 enpyWYrk..LnRnpeelkelekemkekYkktipdkve 44 
                 ++++WY++  L+R+p+ l +l +e+++ Yk  ++d +e
  CDO69092.1 144 TYSMWYKRrmLARSPALLRDLVREARKAYKAATEDLIE 181
                 579***7555************************9887 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.1e-07    0.0011      37      94 ..     241     299 ..     236     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.1e-07
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvle.kagdlaalltnleekdvlfideih 94 
                 ll+G+PG Gkt+l + +a elg +++i s  v     + l +l++nl ++ ++++++i 
  CDO69092.1 241 LLHGAPGAGKTSLIHTVAGELGLNVNILSLTVSGlDDNSLKSLISNLPKSCIILMEDID 299
                 89***********************9999877651456799999999999999988875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.7   7.9e+03      40      63 ..      60      90 ..      59     112 .. 0.63
   2 ?   -3.2   0.0       7.1   9.8e+03      80      97 ..     159     172 ..     126     200 .. 0.56
   3 !   15.9   0.2   9.5e-06     0.013      24      49 ..     235     262 ..     229     441 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
      AAA_16 40 lvrellralekd......g.giflrgkcdql 63
                lv+ l+r+l+++        +++++ ++d++
  CDO69092.1 60 LVEVLRRSLRTAwerftrSfWVTATFEFDDN 90
                5566666666555555543244488888887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.1
      AAA_16  80 ellrqlldeaesaeleaw 97 
                  llr+l +ea++    a+
  CDO69092.1 159 ALLRDLVREARK----AY 172
                 344444444222....22 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 9.5e-06
      AAA_16  24 p..elvllsGesGvGKsslvrellrale 49 
                 p  +  ll+G++G GK+sl+ +++ +l 
  CDO69092.1 235 PfrRGYLLHGAPGAGKTSLIHTVAGELG 262
                 445789**************99987665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05      0.05      56     116 ..     240     298 ..     235     307 .. 0.85
   2 ?   -1.4   0.0      0.78   1.1e+03     176     202 ..     427     456 ..     420     480 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDDL 116
                  LL Ga G+GK sl++++  e+   ++ ++ ++ + l++ ++l +l+++ p+ +i+++ D+
  CDO69092.1 240 YLLHGAPGAGKTSLIHTVAGELGL-NVNILSLTVSGLDD-NSLKSLISNLPKSCIILMEDI 298
                 59****************999875.57788888888877.6788899999*******9996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.78
      DUF815 176 veeklsLsdRFGlwl...gFykldqeeYle 202
                  ee  +L++RF  ++   +F  ++ + Yl 
  CDO69092.1 427 AEEAAALAERFAETIpprTFSMATLQGYLM 456
                 689999999999888333344444445543 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   2.6e+03      51      69 ..     153     171 ..     103     209 .. 0.62
   2 ?   13.5   0.0   4.3e-05      0.06       3      33 ..     241     268 ..     240     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
      AAA_33  51 vldrlyqilnelarkalsa 69 
                  l r  + l++l+r+a++a
  CDO69092.1 153 MLARSPALLRDLVREARKA 171
                 3333444444444444433 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.3e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtl 33 
                 ll+G+pG+GK+ l++ ++ +lg  +     ++l
  CDO69092.1 241 LLHGAPGAGKTSLIHTVAGELGlnV-----NIL 268
                 69****************9988432.....333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.18      22      51 ..     240     270 ..     220     274 .. 0.87
   2 ?    0.3   0.0      0.47   6.5e+02       4      34 ..     427     461 ..     425     471 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                 EEEEESTTSSHHHHHHHHHHHTT--.----T CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve.evkSP 51 
                  lL+G  GaGKT l++ +a +lg++ ++ S 
  CDO69092.1 240 YLLHGAPGAGKTSLIHTVAGELGLNvNILSL 270
                 689********************99888775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHCH....TEEEEEEESTTSSHHH CS
        TsaE   4 eeetealgkklakal....gdvilLeGdLGaGKTt 34 
                 +ee  al++++a+++     ++ +L+G L a KT 
  CDO69092.1 427 AEEAAALAERFAETIpprtFSMATLQGYLMAYKTR 461
                 68889999***9988886556799****9999985 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.042      19      48 ..     240     269 ..     232     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvr 48 
                 +ll G+pGAGK++l++ ++ el+ + n++ 
  CDO69092.1 240 YLLHGAPGAGKTSLIHTVAGELGLNVNILS 269
                 7999*****************976666665 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.3e-05       0.1       2      23 ..     241     263 ..     240     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts.l 23 
                      + hG+pG+GK++li +++ +  l
       CDO69092.1 241 LLHGAPGAGKTSLIHTVAGELgL 263
                      57*************99988443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   4.4e+03      98     139 ..     128     170 ..     114     175 .. 0.74
   2 ?   10.4   0.0   0.00026      0.36      11      51 ..     215     255 ..     201     263 .. 0.86
   3 ?   -2.0   0.0       1.6   2.3e+03     102     139 ..     445     479 ..     422     482 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.2
      AAA_25  98 rddarllvldlagv.eslpLfakdrggtlltadvdaleaaiee 139
                 ++da+  v+ l++  +   +++k+r  ++ +a +++l +++++
  CDO69092.1 128 DPDADYNVVFLPSTeQTYSMWYKRRMLARSPALLRDLVREARK 170
                 5567777777777778888888888888888888888888776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00026
      AAA_25  11 svadlaapppprrwlvkgllpagelallaGapgtGKttlal 51 
                 + +d +  + +r+w+ ++ +p     ll Gapg+GKt l  
  CDO69092.1 215 VLNDAKGFLSSRKWYADRGIPFRRGYLLHGAPGAGKTSLIH 255
                 55677788999******999*****************9975 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
      AAA_25 102 rllvldlagveslpLfakdrggtlltadvdaleaaiee 139
                 +    +l+g     +++k+r +++++++ +++e+++ e
  CDO69092.1 445 TFSMATLQGY---LMAYKTRPHAAVDEAAAWVEKKMSE 479
                 4444444442...3445667777788888888887766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00032      0.44       8      56 ..     240     283 ..     237     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdl 56 
                  +++G +G+GKT l+ +++ +l         ++ +++ t++++   s+k+l
  CDO69092.1 240 YLLHGAPGAGKTSLIHTVAGELGL-------NVNILSLTVSGLDdnSLKSL 283
                 589**************9998853.......55555555555444455555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0042       5.8       2      23 ..     241     262 ..     240     305 .. 0.84
   2 ?    2.1   0.0      0.19   2.6e+02      19      65 ..     430     476 ..     419     482 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0042
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +l+G++g GK++l++++a +l 
    CDO69092.1 241 LLHGAPGAGKTSLIHTVAGELG 262
                   689************9888776 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.19
  RNA_helicase  19 akallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee 65 
                   a+al++++ ++  ++++s ++ + ++  Y+  +   +d+ +++++++
    CDO69092.1 430 AAALAERFAETIPPRTFSMATLQGYLMAYKTRPHAAVDEAAAWVEKK 476
                   67777777777789999************************999873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3215.35
//
Query:       CDO69093.1  [L=202]
Description: hypothetical protein BN946_scf184992.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-41  142.2   0.0    2.3e-41  141.8   0.0    1.1  1  Pantoate_ligase  Pantoate-beta-alanine ligase
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.025   13.9   0.0    1.6  1  UCR_Fe-S_N       Ubiquitinol-cytochrome C reductase Fe-S subu


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.0   2.6e-45   2.3e-41      57     176 ..      52     192 ..      51     195 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 2.6e-45
                      EGGGSSTTSCTTTSEEEHHHHHHHHHHTT-S.....EEE---HHHHST............EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHH CS
  Pantoate_ligase  57 NplqFgpkedlekYPrtleaDlelleeagvd.....lvFaPsveemyp............ttvevkelsevlegasrpghFrGVatvvtkLfni 133
                      +p+qF+p+edl++YPrtl +Dlell++++v+     +vF+P+v+emyp            t vevk++ +++eg++rp +FrGVatvvtkLfn+
       CDO69093.1  52 EPAQFAPHEDLATYPRTLPRDLELLSTLSVSgrtaaAVFVPTVDEMYPsgivqsvdgqkgTFVEVKGYGHQMEGRTRPAFFRGVATVVTKLFNV 145
                      59*************************999999999***********99999999*****99******************************** PP

                      HT-SEEEEEGGGHHHHHHHHHHHHHTT-....SSEEEEEEEEBETTS CS
  Pantoate_ligase 134 vqpdrayfGqKDaqqlavirrlvkdlnl....pveivavpivReedg 176
                      ++p r+yfGqKD+qq++++rr+++dl l    p ++ +vp+vR    
       CDO69093.1 146 IEPMRTYFGQKDIQQALLLRRMTRDLLLshptPENLFIVPTVRCVTR 192
                      **************************886666789********8665 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.8e-06     0.025      17      41 .]      76     100 ..      71     100 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-06
  UCR_Fe-S_N  17 iATgavgaVGaaaaawPfidqmnPs 41 
                 + T +v +  aaa+++P +d m Ps
  CDO69093.1  76 LSTLSVSGRTAAAVFVPTVDEMYPS 100
                 789*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1400.40
//
Query:       CDO69094.1  [L=564]
Description: Glycoside Hydrolase Family 71 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-82  275.3  13.9    1.6e-78  264.2  13.9    3.8  1  Glyco_hydro_71  Glycosyl hydrolase family 71
  ------ inclusion threshold ------
          1    9.8   4.7        1.8    9.0   4.7    1.3  1  NUDE_C          NUDE protein, C-terminal conserved region


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2  13.9   1.8e-82   1.6e-78       1     371 [.     156     534 ..     156     537 .. 0.85

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 1.8e-82
  Glyco_hydro_71   1 VfaHfmvgntenytasdwek.................DiklAkaagiDgFaLNigskdswtaeqladayeaAeavg................... 59 
                     VfaH++vgnt+nyt+s+w+k                 Di+lA + giD+FaLN+g  dsw+++q+a+ay+aA   +                   
      CDO69094.1 156 VFAHVIVGNTYNYTVSNWSKghpytsracisptksftDISLAASKGIDAFALNVGA-DSWEPSQVANAYAAAGLYNanrpqpdavgangtnnsaa 249
                     9*****************8444444444455555555******************7.***************988778999************** PP

  Glyco_hydro_71  60 ....fkLflSfDmavagawpk..sevislikkyashpaqlkvngkplvSTFeGeknaedwasiksalteeiffvPdfsslgaaaaaekaldvvDG 148
                         fkLflSfDm +   +p+  ++  +l+++y +              T +  ++   ++  +++l  +++fvP+f+ +++++++   l+v+DG
      CDO69094.1 250 alnpFKLFLSFDMGS---LPCanASDARLLQTYIK--------------TLNAGWS-AAVKPANASL-PSVWFVPSFF-VDPSTFSG--LSVIDG 322
                     **************7...66632444555665554..............3333333.2344555553.48********.******99..6***** PP

  Glyco_hydro_71 149 lfsWea.WpkgatnmstetDeaylsalkgkpYmmpvSpwffthlgkesynknwvwrgd.dlwakRweqvlelqp..dfveiitWNDygEShYigp 239
                     +f+W++ Wp+g+ n++ + D +y++al++k+Ym++v+pwffth+g++synkn+++rgd +l+a+Rwe +++++    + +++tWND+gEShY+gp
      CDO69094.1 323 AFHWNSaWPMGNYNVTFAPDLSYINALGNKTYMASVAPWFFTHYGPNSYNKNFIYRGDdWLFAQRWEMLVQNRTrvPLAQVLTWNDFGESHYLGP 417
                     ***************************99*****************************9***********99887799***************** PP

  Glyco_hydro_71 240 lkekkaqdgsskyvegmpHdgwrdllkyyiaayKtgskkpaitedklvlwyRphpkkakcssgdtt.gnpanaelleDkvfvvallkspatvtvs 333
                     + +   q++s+++v+g++H++w+dl+++y+aayKtgs+ p + +d+ +      p++  +   dt+ g +a    ++D +++vall++pa+vt+s
      CDO69094.1 418 VAG--VQPQSQAWVDGFDHQPWLDLMQHYVAAYKTGSY-PPVAKDRPIHL----PNDP-A---DTLiGTRA---QTQDYLWAVALLTAPANVTLS 498
                     **9..9999***************************99.88888876532....2222.2...33304443...489****************** PP

  Glyco_hydro_71 334 vggkesetfsvkaGvnklsvpfngetGkvkvsvvrngk 371
                     +g++++ t++v+aG++kl++++ ++  +vk  v+rn +
      CDO69094.1 499 CGSSSQ-TTRVPAGLSKLKLRL-SADCAVKALVTRNAT 534
                     **9999.669************.566679999999865 PP

>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.7    0.0002       1.8      49     153 ..      43     145 ..      30     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0002
      NUDE_C  49 veleiiqeklrkaeek..lrrrkplslsspstpqsleiekrspavqasssPviatppekslsslatgsetatppsPpasessdllrkvlaltsklarqr 145
                  +  ++++ l ++e+          s++s+s++    +++ s  v + s+    t++++s  s+  +s++a+p +P + + +++++ v+a+   l+   
  CDO69094.1  43 ADESVMEKLLHDVEHVlgIVPSSSGSVTSSSSSVLSSTQDVSLSVAS-STAASFTTLHSS--SVV-ASSAASPSAPNVDQVASSVSLVTATSTPLPTPS 137
                 56666666666666663222333344555555544555666665555.444444666666..555.688999999999999*******99999999999 PP

      NUDE_C 146 asisdsaa 153
                 a++++++ 
  CDO69094.1 138 AVVQNTTG 145
                 98888644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3956.33
//
Query:       CDO69095.1  [L=389]
Description: hypothetical protein BN946_scf184992.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-11   40.8   0.0    2.6e-10   39.4   0.0    1.8  1  LANC_like  Lanthionine synthetase C-like protein


Domain annotation for each model (and alignments):
>> LANC_like  Lanthionine synthetase C-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.5e-14   2.6e-10      92     212 ..     162     311 ..      43     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 1.5e-14
                 HCTCHT..GHSSTTTSHHHHHHHHHHHHHHH...........-SGHHHHHHHHHHHHHHH......................CHHCCTTTCHSCHH-BT CS
   LANC_like  92 eekledekkdyDvisGlaGilsyllllneet...........kieedllkqilkylvelg......................iksenqvswsplmyepe 157
                  e+l+++   ++v++G+aG+l++llll+ e+           k +++++++++++ ++                         +  ++  ++plm +++
  CDO69095.1 162 MEELDED--GCEVLYGRAGLLYALLLLRSELlltvnylthagKPKDRVVREVESLCSDENvqalvddiiqrgelgakryaeeLEASDREKAPPLMWKWH 258
                 3333222..59********************777777766655555555555555555559*******************98888899999******** PP

                 TBEB-STTTSHHHHHHHHHCCCHT.-HHHHHHHHHHHHHHHHHTS-TGTST--SB CS
   LANC_like 158 gesnlGlAHGlsGialallalykgtksekllelikkllkylkslkfksegnWpds 212
                 g+++lG+AHG++Gi++  l+++ +t    +   i +++++l+  + +  gnWp++
  CDO69095.1 259 GSRYLGAAHGIAGILTEVLHAPSNT-IAPHWPKILSTVEWLLAIQ-SPLGNWPSK 311
                 ********************99775.4444445556667777666.336677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2668.83
//
Query:       CDO69096.1  [L=740]
Description: Copper radical oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-29  102.4   0.3    4.6e-12   45.6   0.0    4.1  4  Glyoxal_oxid_N  Glyoxal oxidase N-terminus
    2.1e-22   79.2   0.1    3.7e-22   78.4   0.1    1.5  1  DUF1929         Domain of unknown function (DUF1929)
     0.0017   18.3   0.1       0.15   12.1   0.1    3.5  2  Kelch_4         Galactose oxidase, central domain
  ------ inclusion threshold ------
      0.026   14.4   0.1      0.093   12.7   0.1    1.9  1  Big_11          Bacterial Ig-like domain
       0.19   10.4   0.0        0.3    9.8   0.0    1.2  1  Herpes_gE       Alphaherpesvirus glycoprotein E


Domain annotation for each model (and alignments):
>> Glyoxal_oxid_N  Glyoxal oxidase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.1e-07    0.0015      46      87 ..      27      68 ..      14      78 .. 0.89
   2 !   33.4   0.0   7.3e-12   2.6e-08      85     137 ..      95     157 ..      83     171 .. 0.87
   3 !   45.6   0.0   1.3e-15   4.6e-12     132     240 .]     173     274 ..     165     274 .. 0.91
   4 ?   -0.6   0.0      0.17   6.1e+02     114     136 ..     400     423 ..     385     450 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.1e-07
  Glyoxal_oxid_N 46 aHsveydvatnavrplkvltdtwcssgalladGtlvqtGGfk 87
                    a    yd+a+++  +++v+t+++cssg  l++G+    GG  
      CDO69096.1 27 AMGAVYDIASRKAETMAVSTNVFCSSGMHLPNGSYATFGGNG 68
                    66778******************************9999975 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 7.3e-12
  Glyoxal_oxid_N  85 Gfkdgerkvrllspc........eecdwvelke..elaekRwyatnqiLpdgrvivvGGrraf 137
                     G+ dg+r++r+l+pc         +c+w ++ +  +++++Rwy+t + L dg+++++GG ++ 
      CDO69096.1  95 GDYDGTRSIRILNPCkdgedftsPHCQWFDNASllSMQSQRWYSTAEPLGDGSIVLIGGFTNG 157
                     899**************99998778******997777899*******************8765 PP

  == domain 3  score: 45.6 bits;  conditional E-value: 1.3e-15
  Glyoxal_oxid_N 132 GGrrafsyefvpkeekseekavelpfLketedkeennLYPfvhllpdgnlfifankrsilldykknkvvrefpklpgge.rnyPssgssvlLplk 225
                     GG  + ++ef+p+++   ++  +++f+ +t+     n Y   +ll  g++ + an  +i++d+  n v  ++p +p++  r yP+sg+ ++Lpl 
      CDO69096.1 173 GGAANPTFEFFPANG---RTPQDMNFMVKTSG---LNAYALTYLLKSGKMLVQANYSTIIWDPIAN-VETDLPDMPDQIvRVYPASGANAMLPLL 260
                     9999*********88...567789*****996...699************************9876.7789******988**************9 PP

  Glyoxal_oxid_N 226 lkeeaseaevlvCGG 240
                      + ++ +  v+ CGG
      CDO69096.1 261 PE-NNYTQTVIFCGG 274
                     75.56778899***9 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.17
  Glyoxal_oxid_N 114 kRwy.atnqiLpdgrvivvGGrra 136
                      R y ++  +Lpd +v++ G   +
      CDO69096.1 400 ARLYhSSAILLPDASVLIAGSNPN 423
                     455515566789999999997655 PP

>> DUF1929  Domain of unknown function (DUF1929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.1     1e-25   3.7e-22       1      95 [.     451     559 ..     451     560 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 1e-25
     DUF1929   1 RPkissvptevkyg.etftvtvsv.......ekeaeevkvslvrpgfvTHsvnmdqRlveLev....set....gytvtvtaPpnanvapPGyymlFvv 83 
                 RP+++++p++++yg + f+++vs+       +++a++++v+++r+g +TH++nm+qR ++L+     + +    + +v+ ++Ppn+n+++PG+++lFv+
  CDO69096.1 451 RPTFTGAPSTLSYGgDPFDLQVSAssysgsaNDAADNTTVVIIRTGWTTHGMNMGQRALKLNNtytvN-QdgsiTLHVS-QLPPNPNLFQPGPALLFVT 547
                 9******999****899****99999*99876667788***********************9765541.1454566666.9****************** PP

     DUF1929  84 ndgvpSvgkwVk 95 
                  +g+pS+g++V 
  CDO69096.1 548 MSGIPSNGSYVI 559
                 ********9995 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   4.3e-05      0.15       2      25 ..     135     158 ..     134     166 .. 0.90
   2 ?    1.8   0.0     0.067   2.4e+02       1      19 [.     400     419 ..     400     424 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg 25 
                 R++ +a  ++dg+i+l+GG ++ g
  CDO69096.1 135 RWYSTAEPLGDGSIVLIGGFTNGG 158
                 9*******************9975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.067
     Kelch_4   1 pRaghs.atsipdgtiylfG 19 
                 +R +hs a+ +pd ++ + G
  CDO69096.1 400 ARLYHSsAILLPDASVLIAG 419
                 799***67777*99999665 PP

>> Big_11  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.6e-05     0.093      33      54 ..     512     533 ..     510     539 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
      Big_11  33 ekevtinedGsvtipnseLpee 54 
                 ++++t+n+dGs+t+  s+Lp +
  CDO69096.1 512 NNTYTVNQDGSITLHVSQLPPN 533
                 89******************76 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   8.5e-05       0.3     333     381 ..     601     649 ..     566     658 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 333 eiappnngtsraalllaavliaalllvllglsalvcltkrrrrkkrrvk 381
                 + + +n +ts+     + ++ a++ + +lg ++ +c+++rrr ++++  
  CDO69096.1 601 NDNSKNGATSHTGAIVGGIIAAIAAVGILGAGFGICMARRRRAAAQQAS 649
                 12222222333333333344455567788999********999998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5336.38
//
Query:       CDO69097.1  [L=297]
Description: hypothetical protein BN946_scf184992.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0023   17.4   0.0     0.0053   16.3   0.0    1.5  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.031   13.6   0.2        5.8    6.1   0.1    3.1  3  Hydrolase_4    Serine aminopeptidase, S33
        0.1   11.2   0.0       0.14   10.8   0.0    1.2  1  PhoPQ_related  PhoPQ-activated pathogenicity-related protein
       0.12   11.0   0.1       0.17   10.5   0.1    1.1  1  Peptidase_S37  PS-10 peptidase S37


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-06    0.0053      64     189 ..     149     282 ..     136     293 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-06
                   GGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS...THHHCCCC--TTTCHHHHHHHHHH-CGGG--.....---EEEEEEET CS
  Peptidase_S9  64 erlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl...lteeymewgnpeeneegykelspyspldnvk.....aypplLlihGl 152
                   ++  + G S GG  t  +l  +  + ++av   ++ d l+ ++       l      +++p  +  ++ +  +++p+++         +++L++ G+
    CDO69097.1 149 SQFLCVGKSLGGHATWIVLR-NEPRIQVAVPIIACPDYLALMTRRAKfhkLPVGPPYFPKPLLDLIQR-ADPAAAPYTASDgsnpfLGKKILVLSGQ 243
                   677899*******9988888.6666699999999*9*9999999755333222233334443333322.2223334444338889999********* PP

                   T-SSS-THHHHH.HHHHHH--S-S.EEEEEETTS-SSTT CS
  Peptidase_S9 153 aDdrvppaealk.lvaaLqkkgkn.vlllifpdegHgvg 189
                    D++vp ++a+k +v+ L+       +++++p+ gH ++
    CDO69097.1 244 DDKKVPWNTAAKhFVEGLNVGERGvKEVVVEPGVGHEFS 282
                   ******999886477889855555568999******665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0013       5.8       2      57 ..      35      87 ..      34     108 .. 0.87
   2 ?    1.3   0.0     0.037   1.7e+02      76     106 ..     149     180 ..     125     198 .. 0.76
   3 ?    2.4   0.0     0.018        79     193     233 ..     236     280 ..     202     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0013
  Hydrolase_4  2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfdd 57
                 +p av++l+HG++ ++ +++e+++   +   +v+a   +G+G ++ +  ++  fd+
   CDO69097.1 35 APVAVMFLLHGRNGSALKMEEFVYGIFD---EVHARRRKGQGGEGARDLYIVTFDQ 87
                 6889*******************99998...4888888888888777777777765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.037
  Hydrolase_4  76 lplfllGhSmGGliallyllrypd.kvaglil 106
                  +++ ++G S+GG  +  +l ++p+ +va  i+
   CDO69097.1 149 SQFLCVGKSLGGHATWIVLRNEPRiQVAVPII 180
                  467889******99888887777734444444 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.018
  Hydrolase_4 193 PllllhGeaDkvv.dpeasrelyerlgsk...dktlklypglyHe 233
                   +l+l+G++Dk v ++ a+++++e l+      k++ + pg  He
   CDO69097.1 236 KILVLSGQDDKKVpWNTAAKHFVEGLNVGergVKEVVVEPGVGHE 280
                  59********86615777799999876554467888888888887 PP

>> PhoPQ_related  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.2e-05      0.14     168     203 ..     145     180 ..      87     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.2e-05
  PhoPQ_related 168 klkiekFvvsGaSKRGWttwltaivDkrvkaivPvv 203
                    + +i +F+  G S  G +tw +  +++r++  vP++
     CDO69097.1 145 ERQISQFLCVGKSLGGHATWIVLRNEPRIQVAVPII 180
                    568*******************************96 PP

>> Peptidase_S37  PS-10 peptidase S37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   3.7e-05      0.17     355     399 ..      55     101 ..      43     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.7e-05
  Peptidase_S37 355 lfvygendpwgaerfr..lghgardsyvltapgmnhganvaglvpdq 399
                     fvyg  d   a r +   g gard y++t    nhg  +a    +q
     CDO69097.1  55 EFVYGIFDEVHARRRKgqGGEGARDLYIVTFDQRNHGKRLADKKANQ 101
                    59*******999886522689****************9998765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2268.04
//
Query:       CDO69098.1  [L=1560]
Description: hypothetical protein BN946_scf184992.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-126  421.0   0.0   4.6e-126  420.4   0.0    1.3  1  Plavaka          Plavaka transposase
    1.5e-16   60.3  34.0    3.9e-12   45.8  34.0    3.4  1  MFS_1            Major Facilitator Superfamily
    4.1e-10   38.7   5.0    4.1e-10   38.7   5.0    2.2  2  TRI12            Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.4   0.0  7.6e-130  4.6e-126       1     324 []      25     352 ..      25     352 .. 0.94

  Alignments for each domain:
  == domain 1  score: 420.4 bits;  conditional E-value: 7.6e-130
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegel.eeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 F+n+++L++tiD++p+gd++w++++v+++g+l +++ p+wm +eye+wfrdp++++ ++++npdfad++d++P+r y   + ++r+y+++m+gdwaw+ 
  CDO69098.1  25 FANHEHLYATIDDIPQGDVPWQTFSVTYNGPLpTGAMPSWMIREYEVWFRDPRQALLNQYSNPDFADDIDWVPKRIYV--QGDKRQYRDFMSGDWAWNE 121
                 99****************************99889*******************************************..4569*************** PP

     Plavaka  99 q..ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipk.....l..kkikkskefrklfkrqlfHacl 187
                 +  ++e+p  +ga l+ +il+sDKTt+sv+tg++e+yP+Yls G ++++vrr ++rna++l+++L+ipk     l  ++++++++frk f+r+lfH++l
  CDO69098.1 122 AdlLAEDPdLHGAALLTLILGSDKTTVSVATGQNEYYPLYLSNGGVRNNVRR-SHRNAITLIGFLAIPKsmyamLseRHHQNDATFRK-FRRELFHTSL 218
                 **87788779******************************************.**************774444433457788888888.********** PP

     Plavaka 188 arilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglkgv 286
                 + il+pL++ +++ +v++cadgh+rrv++ l++yiaDypEqvl+ac+vqgwC++cta++++l++  + ++r++++ +e+l++++d l++lw++yg++g+
  CDO69098.1 219 RVILDPLRQSMTTYEVLRCADGHYRRVVFSLGPYIADYPEQVLLACTVQGWCARCTAPPDNLDTGPA-TRRSQQH-TEALRDTFD-LRTLWDDYGVVGD 314
                 **************************************************************99644.5566555.677799999.************* PP

     Plavaka 287 iepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                  +pF+e++pradi+e+l+pDlLHq+ikg+fkdHlv+Wv
  CDO69098.1 315 LKPFTESFPRADIYEMLSPDLLHQVIKGTFKDHLVTWV 352
                 *************************************8 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8  34.0   6.5e-16   3.9e-12       3     329 ..     833    1179 ..     831    1184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 6.5e-16
       MFS_1    3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99  
                   +++lsal+ ++++++lp ++++dl+  ++++ ++ ++yal +++  ++ G ++d fGr++v+l        +     +     +l+++r +qG+g+
  CDO69098.1  833 ASVLLSALDLTAVSVTLP-TITNDLQ-GGDQFTWVGSAYALSSIAILPLSGNFADIFGRKPVML--------S-----M-D---MLIAARTVQGIGG 910 
                  57899*************.*******.**********************************974........3.....2.2...599********** PP

       MFS_1  100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........................Wravfyilaivsllafvlflll 171 
                  g+++ +  ++++d++p  erg++ g+l++ +s+++ +gp++    +  +g                                               
  CDO69098.1  911 GSIVNLTEIILSDLVPLAERGLYQGVLGLIWSFASGVGPPIIDTNLPIAGvafvlvlfflkvktpagsmrrklarV--------------------- 986 
                  **************************************99966444344444444444444455555555555441..................... PP

       MFS_1  172 lpeepperkrkspkeee.................................................kgtgpaplvpawkallkdpvlw...illial 216 
                                 ++                                                  +    p++p w+a l +          i+ 
  CDO69098.1  987 ---------------DWfgnaiivagtvvavlgltwggaqypwgsakvlaplviglvtvlafflyeRKLPSEPAIP-WEACLEST--DdvdNRYIGT 1065
                  ...............2255555555555555555544444444433333344477777777777744444445555.77777666..1334344444 PP

       MFS_1  217 llfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGf 312 
                   + +++  ++ ++lp+++q  +g s  l +++ +  ++l++a++al++g +++ + r r +   + +l+++ +gl+ l  ++ +v+ ++ + v++ +
  CDO69098.1 1066 TIHGIVSISIIYYLPVFFQACMGAS-PLRSAVDILPTSLIIAPFALICGIVVQVTERYRLIQYLGWILIIVGFGLMTLLSPHPTVAQWVgFQVVVNV 1161
                  444456677****************.8******************************9999999999999999999999999*******64444666 PP

       MFS_1  313 glgfv.fpsllalasdla 329 
                  g g++ ++s+ +++++l 
  CDO69098.1 1162 GIGLIvSGSIRSCITRLW 1179
                  666554777777777665 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   0.4    0.0077        46      53     119 ..     835     901 ..     823     924 .. 0.79
   2 !   38.7   5.0   6.8e-14   4.1e-10     228     393 ..     975    1142 ..     957    1154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0077
       TRI12  53 vvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilgl 119
                 v+ + + l a + +lp i +d+   ++ + + + +++     + + g ++d fgr+p+++   +l  
  CDO69098.1 835 VLLSALDLTAVSVTLPTITNDLQGGDQFTWVGSAYALSSIAILPLSGNFADIFGRKPVMLSMDMLIA 901
                 45555668899999********999999999999999877666789***********9988777644 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 6.8e-14
       TRI12  228 kkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivpp.alfkdtrgfvcillissimg 323 
                     + r +la++dw g  ++++g+ + +lg++wgg  + pw sakv+  +  gl +++ f lye    p +p +p  a +  t  +    + ++i g
  CDO69098.1  975 PAGSMRRKLARVDWFGNAIIVAGTVVAVLGLTWGGA-QYPWGSAKVLAPLVIGLVTVLAFFLYER-KLPSEPAIPWeACLESTDDVDNRYIGTTIHG 1069
                  5567899****************************6.68*************************7.57999*9996267788888888899999*** PP

       TRI12  324 amnlslviiypqqvvnifgss.lknweetawms.atasfgtgagvvv.lgslfhlvrhirwqilvgalwltaf 393 
                   + +s++   p      +g+s l+   +    s   a f   +g+vv + + + l++++ w +++  + l ++
  CDO69098.1 1070 IVSISIIYYLPVFFQACMGASpLRSAVDILPTSlIIAPFALICGIVVqVTERYRLIQYLGWILIIVGFGLMTL 1142
                  *999999999999999999764777666555442578999999988846789*********877655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 10752.60
//
Query:       CDO69099.1  [L=253]
Description: hypothetical protein BN946_scf185042.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1540.26
//
Query:       CDO69100.1  [L=802]
Description: hypothetical protein BN946_scf185042.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-102  342.7   0.0   2.4e-102  341.9   0.0    1.4  1  PIP5K     Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.9   0.0  1.3e-106  2.4e-102       2     274 .]     479     789 ..     478     789 .. 0.97

  Alignments for each domain:
  == domain 1  score: 341.9 bits;  conditional E-value: 1.3e-106
                 SS-EEEE----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-TT--S--EEEEEEEE.ETTEEEEEEEEE-SS-TTS--SEEEEE-S-- CS
       PIP5K   2 ksalkelsseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenpnsLltrfyglhrvklkggkkvrfvVmenlfptdkeiheryDLKGst 100
                 k++l+el+s+GkSgsffy+++D++fiiKti+++e+kflr++l++Yyehvk+np++Ll+rfyglhrvkl++g+k++fv+m+nlfp +k+ihe+yDLKGst
  CDO69100.1 479 KYILSELGSPGKSGSFFYFSRDYRFIIKTIHHNEHKFLRRILKQYYEHVKSNPHTLLSRFYGLHRVKLPHGRKIHFVIMNNLFPAHKDIHETYDLKGST 577
                 689************************************************************************************************ PP

                 TT-S--HHHH.TSSS-EEEHHHHHHHST.EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB---------------------------..... CS
       PIP5K 101 vgReakkkee.ekkektlkDlDliekkeklklgkekreelleqlekDvefLeslnimDYSLLlGihnsekeekeekkesessssekesekseee..... 193
                 vgRe+ +++  ++ + +lkDl++i++k+ l+lg+ekr+ l+eql++D+e+L+ l++mDYSLL+Gihn+++ +k++ ++++ + ++++    +++     
  CDO69100.1 578 VGREYPEEKAaQNPRAVLKDLNWIKRKKTLELGPEKRALLTEQLRRDSEMLKTLGVMDYSLLVGIHNMRRGNKDNVRRNTLKVFSPDMPMINRKktigk 676
                 ******65552666677*******************************************************************999988888789*** PP

                 ................................-----------------SEEEEESSSSEEEEEEEEE----B----------------------TTHH CS
       PIP5K 194 ................................aseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalkslkkdkksisavpP 260
                                                 ++ e++   +++de+g +a++e +e ++++yylg+IDiL+ yn+ Kkleh++k+l+ d+++is vpP
  CDO69100.1 677 gpqspeaiamrrimrqadpqsldsgtitlpeeDTGERQYFLFYQDEGGLRATDEANECMDTIYYLGVIDILTPYNTLKKLEHFWKGLSADRHKISPVPP 775
                 ******************************9999999999*********************************************************** PP

                 HHHHHHHHHHHHHT CS
       PIP5K 261 keYaeRFlkfieki 274
                 +eYa+RF+ f+++i
  CDO69100.1 776 AEYASRFFCFMKSI 789
                 ***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 5282.26
//
Query:       CDO69101.1  [L=1327]
Description: hypothetical protein BN946_scf185042.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-52  178.3   6.0      6e-50  169.4   0.4    3.7  3  Cnd1       non-SMC mitotic condensation complex subunit 1
    3.2e-49  167.0   0.4    3.2e-49  167.0   0.4    2.8  2  Cnd1_N     non-SMC mitotic condensation complex subunit 1, N-
    9.9e-08   32.3   1.7      0.018   15.4   0.0    4.6  4  HEAT_2     HEAT repeats
    8.5e-06   24.6   5.4     0.0047   15.6   0.2    4.0  4  Adaptin_N  Adaptin N terminal region
      1e-05   25.3   9.0       0.65   10.4   0.2    6.7  7  HEAT       HEAT repeat
    2.7e-05   24.3   1.5       0.59   10.3   0.0    4.0  3  RTP1_C1    Required for nuclear transport of RNA pol II C-ter
     0.0011   19.1   1.1          4    7.5   0.1    3.9  4  ENTH       ENTH domain
  ------ inclusion threshold ------
      0.017   14.3   6.5      0.026   13.7   0.3    3.5  4  Cnd3       Nuclear condensing complex subunits, C-term domain
      0.019   15.4   1.4       0.82   10.1   0.0    4.1  4  YtzH       YtzH-like protein
      0.028   14.7   0.2       0.13   12.6   0.0    2.2  2  FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
       0.15   12.4   0.4        3.9    7.9   0.0    3.3  3  PqqD       Coenzyme PQQ synthesis protein D (PqqD)
        4.2    8.0   8.3         83    3.8   0.1    4.9  4  HEAT_EZ    HEAT-like repeat


Domain annotation for each model (and alignments):
>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2   0.00078       1.2      22      50 ..     397     425 ..     371     438 .. 0.80
   2 ?   -3.4   0.0       5.8   8.6e+03      34      69 ..    1021    1059 ..    1020    1060 .. 0.79
   3 !  169.4   0.4     4e-53     6e-50       2     162 .]    1062    1222 ..    1061    1222 .. 0.99

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00078
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakLil 50 
                 ++     +L+D+++ VRk a+ ++ kLi 
  CDO69101.1 397 MTRAAVDALEDKSSNVRKAAVSLLVKLIV 425
                 55555678*******************64 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.8
        Cnd1   34 dpyVRktaaivvakL..ilndmvkekg.flselaklleD 69  
                  + + R+ a ++++k   ++ +++++   +l+++++  +D
  CDO69101.1 1021 NRTLRMAATLAFSKFlcVSSQFCEQHHrLLFKILETSKD 1059
                  567899999999999899999999988888877766555 PP

  == domain 3  score: 169.4 bits;  conditional E-value: 4e-53
        Cnd1    2 iRalairtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynl 96  
                  iR++++++lg  ++ +++++++  ++L+++L+D+d+ V+k++++v+++Liln+mvk+kg++ elak++eDe++r++++a+++++e+s+k+ naiyn+
  CDO69101.1 1062 IRSNIVIALGdvAVSFSSIIDESNDELYTGLRDSDMIVKKNTLMVLTHLILNGMVKVKGQMGELAKCVEDEDERISDLAKMFFEELSTKD-NAIYNN 1157
                  9*****************************************************************************************.****** PP

        Cnd1   97 lpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviLs 162 
                  lpd+is+ls   + ++e+++++ +++++++i+k+kq ae++veklc+r++ +++ +++++i+++Ls
  CDO69101.1 1158 LPDVISHLSVGAHAIDEEAFQSTMKYIFKFIEKEKQ-AENIVEKLCQRFRLSEDPRQWRDIAFCLS 1222
                  **********99************************.***************************96 PP

>> Cnd1_N  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.0   0.4   2.1e-52   3.2e-49       2     166 .]      75     226 ..      74     226 .. 0.95
   2 ?   -4.1   0.2       8.6   1.3e+04      51      84 ..     934     967 ..     930     973 .. 0.59

  Alignments for each domain:
  == domain 1  score: 167.0 bits;  conditional E-value: 2.1e-52
      Cnd1_N   2 klksklldlllsglsallesvesdlessdeadsvashknaLemygfllqwlvealekessskssaasasargrkkkkkkkkkkeeawdweaqrerilel 100
                 ++++k+ld+++s+  a+le++ +d++ +++++++ +hk +Lemy+fll w+v+a+ek ++  +s       ++++k        e+w+w++q++++l+l
  CDO69101.1  75 SHMTKILDSISSAYLAHLEATVRDVD-EEDQHTFMAHKMPLEMYAFLLNWFVSAAEKGRQAPASR------STARK------PSEEWSWQDQIPHTLKL 160
                 6899**********************.5669***************************9988876......44455......78*************** PP

      Cnd1_N 101 iakvlelklsrlfqttserdeFislftrpaysllEneallKdksirdaifkvlclavkkhghalaa 166
                 i++vl lk +r++qt++er++Fi++++rp+y+++Ene+++K+++ir a++k +clavk+ ghalaa
  CDO69101.1 161 ISRVLHLKSQRIWQTSAERENFINCVVRPVYHVMENEQYMKSADIRRAVYKAICLAVKHQGHALAA 226
                 ***************************************************************986 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.6
      Cnd1_N  51 wlvealekessskssaasasa..rgrkkkkkkkkkk 84 
                 +++e++e e +++++++ ++a   g++     k+k+
  CDO69101.1 934 VFLELVEREWKRQKHEKEMAAkiGGSGTA--DKSKE 967
                 67888888888888877777643333333..22222 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.35   5.2e+02      32      62 ..     302     332 ..     291     350 .. 0.65
   2 !   10.5   0.1    0.0004       0.6       3      57 ..     360     422 ..     358     430 .. 0.76
   3 !   15.4   0.0   1.2e-05     0.018       3      76 ..    1049    1134 ..    1047    1140 .. 0.78
   4 ?   -2.1   0.0       3.6   5.4e+03       2      38 ..    1199    1237 ..    1198    1240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.35
      HEAT_2  32 alpaLvellededpavRraaaeaLgaigdpe 62 
                  l++L+  l++e+   R a++e +g i ++ 
  CDO69101.1 302 QLALLLAHLDSESYPMRNAVVELIGSIIREL 332
                 4666666677777777777777777664444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0004
      HEAT_2   3 aLlqalendpdpevrraairaLg.......rignp..ealpaLvellededpavRraaaeaLga 57 
                 +Ll++   d + +vr +++ + +       ++  +     +a v++led++++vR+aa+  L++
  CDO69101.1 360 LLLERT-LDLSSYVRLKVLSTFAklcdvntKFPQQrlAMTRAAVDALEDKSSNVRKAAVSLLVK 422
                 677777.68888999999999996665543333333355999*****************99987 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.2e-05
      HEAT_2    3 aLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaL......gaigdpealpaLkellddddd 76  
                  +L ++le+++dp +r ++++aLg+ +        e+ + L   l+d+d+ v ++  + L      g ++ +     L++++ d+d+
  CDO69101.1 1049 LLFKILETSKDPSIRSNIVIALGDVAVSfssiidESNDELYTGLRDSDMIVKKNTLMVLthlilnGMVKVKGQMGELAKCVEDEDE 1134
                  699********************5554444445599*********************99444443345677778888887776655 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.6
      HEAT_2    2 daLlqalendpdpevrraairaLg..rignpealpaLve 38  
                  ++L+q+ + ++dp   r ++ +L    ++++++++ L e
  CDO69101.1 1199 EKLCQRFRLSEDPRQWRDIAFCLSllPFKSERSVKKLME 1237
                  789999988999999999999999767899999998876 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0045       6.7     413     493 ..     297     394 ..     263     399 .. 0.82
   2 ?    3.3   0.1     0.016        24     115     146 ..     397     428 ..     395     440 .. 0.83
   3 ?   -3.0   0.0       1.3     2e+03     372     423 ..     576     627 ..     564     638 .. 0.63
   4 !   15.6   0.2   3.1e-06    0.0047      92     180 ..    1021    1119 ..    1018    1153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0045
                 TTCHHHHCCTCCG..XXSHHHHHHHHHHHHHTTTTXTT...................HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXH CS
   Adaptin_N 413 eeiiekLaellek..ieseearaaaiWllGeygelvsn...............te.sasdllrslaekfvlesekvklqiltalvKlyltspdketqek 493
                 + ++++La ll     es  +r+a++ l+G +  ++ +               +  ++  l  +l+e+  + s  v+l++l++++Kl++++  k  q++
  CDO69101.1 297 RQVLKQLALLLAHldSESYPMRNAVVELIGSIIRELADdglnaagpddvdrakQLkQINGLYDLLLERTLDLSSYVRLKVLSTFAKLCDVNT-KFPQQR 394
                 456899999999966666679999999999999999999999*******99984459999999************************99985.566555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.016
                 HHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCH CS
   Adaptin_N 115 lapaikkllkdrspyvrkkAalailklykkdp 146
                 +++a  ++l+d+s+ vrk+A+  ++kl+   p
  CDO69101.1 397 MTRAAVDALEDKSSNVRKAAVSLLVKLIVTHP 428
                 566667899*****************987655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.3
                 CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTC CS
   Adaptin_N 372 atdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaell 423
                  + +e  ++++ +ll ++++  + e++e++r   + + +  e  i+k++ l+
  CDO69101.1 576 IRTVEEGMKTVQKLLASTNKLEVLEAMEFFRVCYEYKFDAAEAGIKKMLHLI 627
                 5555555666666666666666666666666666666666666666666555 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 3.1e-06
                  SHHHHHHHHHHHCCC-..-CCCHHHHHHHHHHHHT.-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH...... CS
   Adaptin_N   92 nqlirglALrvLssir..vpelaedlapaikkllk.drspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei...... 179 
                  n  +r+ A  + s++   +++ +e+  + ++k+l+ +++p++r++ ++a+ ++  + ++++ +   +e+   l d+d++v+ +++++l+++      
  CDO69101.1 1021 NRTLRMAATLAFSKFLcvSSQFCEQHHRLLFKILEtSKDPSIRSNIVIALGDVAVSFSSIIDES-NDELYTGLRDSDMIVKKNTLMVLTHLilngmv 1116
                  666677777777777666889999999*******99999**********************998.*************************9666666 PP

                  ..H CS
   Adaptin_N  180 ..k 180 
                    k
  CDO69101.1 1117 kvK 1119
                  551 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       5.3   7.9e+03      13      25 ..     202     214 ..     201     219 .. 0.82
   2 ?    3.0   0.0       0.1   1.5e+02       4      28 ..     305     329 ..     303     332 .. 0.89
   3 ?    3.6   0.1      0.07     1e+02       2      29 ..     358     385 ..     357     386 .. 0.88
   4 !   10.4   0.2   0.00044      0.65       8      27 ..     404     423 ..     400     425 .. 0.90
   5 ?   -2.8   0.0       7.5   1.1e+04      16      27 ..    1024    1035 ..    1020    1036 .. 0.81
   6 !    6.2   0.0    0.0099        15       5      28 ..    1050    1074 ..    1048    1076 .. 0.87
   7 ?    0.6   0.0      0.61   9.1e+02       6      27 ..    1089    1110 ..    1086    1113 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.3
                 SHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLg 25 
                 s+++R+a+ ka++
  CDO69101.1 202 SADIRRAVYKAIC 214
                 789*****99997 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 lll  l ++s   R a+++ +g ++
  CDO69101.1 305 LLLAHLDSESYPMRNAVVELIGSII 329
                 78999*****************997 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                  +lll+   D s+ VR  ++ ++++l+ 
  CDO69101.1 358 YDLLLERTLDLSSYVRLKVLSTFAKLCD 385
                 67888888899***************97 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00044
                 HHT-SSHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgal 27 
                 +l+D+s++VR+aA+  L++l
  CDO69101.1 404 ALEDKSSNVRKAAVSLLVKL 423
                 799*************9987 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 7.5
                  HHHHHHHHHHHH CS
        HEAT   16 VReaAakaLgal 27  
                   R+aA +a+ ++
  CDO69101.1 1024 LRMAATLAFSKF 1035
                  69******9876 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0099
                  HHHHH.T-SSHHHHHHHHHHHHHHH CS
        HEAT    5 llkll.sDpspeVReaAakaLgala 28  
                  l k l ++++p++R++ + aLg++a
  CDO69101.1 1050 LFKILeTSKDPSIRSNIVIALGDVA 1074
                  67778899**************976 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.61
                  HHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    6 lkllsDpspeVReaAakaLgal 27  
                   + l+D+++ V ++++  L++l
  CDO69101.1 1089 YTGLRDSDMIVKKNTLMVLTHL 1110
                  6789************999987 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0004      0.59       5      73 ..     307     389 ..     303     397 .. 0.92
   2 ?    1.5   0.0      0.21   3.2e+02       4      29 ..     401     426 ..     398     450 .. 0.79
   3 !    8.0   0.1    0.0021       3.2       5      84 ..    1089    1190 ..    1086    1210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkske..............avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpe 73 
                 l++l ++  p+r   + l+ ++i++   +              ++++i+ + +llle   d  sYv L++ +++++L+dv ++
  CDO69101.1 307 LAHLDSESYPMRNAVVELIGSIIRELADDglnaagpddvdrakQLKQINGLYDLLLERTLDLSSYVRLKVLSTFAKLCDVNTK 389
                 7789999******************99889************99***********************************9765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.21
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliek 29 
                 a++ l+d+   vr  +++lL kli +
  CDO69101.1 401 AVDALEDKSSNVRKAAVSLLVKLIVT 426
                 67778888888888888888888754 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0021
     RTP1_C1    5 lkdlqdpllpvrahglvlLrkliekkske..............avldiekilkllleaLkdedsYvYLn...aikgLvaLadvfpeevlklLleey. 83  
                   + l+d+ + v+ + l+ L++li +   +              + + i+ ++k+++e L+ +d  +Y n   +i+ L+  a++++ee ++  +++  
  CDO69101.1 1089 YTGLRDSDMIVKKNTLMVLTHLILNGMVKvkgqmgelakcvedEDERISDLAKMFFEELSTKDNAIYNNlpdVISHLSVGAHAIDEEAFQSTMKYIf 1185
                  567999******************99977999********9999999********************985557888888888888888887777655 PP

     RTP1_C1   84 ....e 84  
                      +
  CDO69101.1 1186 kfieK 1190
                  55541 PP

>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.75   1.1e+03      58     114 ..     153     211 ..      76     219 .. 0.84
   2 ?   -3.6   0.0       7.3   1.1e+04      98     115 ..     403     419 ..     362     423 .. 0.58
   3 !    7.5   0.1    0.0027         4      35     104 ..    1075    1152 ..    1065    1166 .. 0.71
   4 !    6.8   0.0    0.0044       6.5      22      68 ..    1179    1226 ..    1173    1240 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG.GG---.B-TTS-B-HHHHHHHHHH CS
        ENTH  58 svlKaLtlieYLlknGseqvidwlkenisiiktl.sefky.ideegkdeglniRkkakk 114
                 ++  +L+li+ +l+  s+++ +   e+ + i+ + + +++ +++e+ ++   iR+ + k
  CDO69101.1 153 QIPHTLKLISRVLHLKSQRIWQTSAERENFINCVvRPVYHvMENEQYMKSADIRRAVYK 211
                 56678999999999999999999999999998885433333777999999999998765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.3
                 -TTS-B-HHHHHHHHHHH CS
        ENTH  98 deegkdeglniRkkakki 115
                 d   +d+ +n+Rk a ++
  CDO69101.1 403 D-ALEDKSSNVRKAAVSL 419
                 3.3667777888777655 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0027
                  HHHHHHHHHHHHHHHH.--GGGHHHHHHHHHHHHHHHHHS-H.......HHHHHHHHTHHHHHGGGG---B-T.TS-B- CS
        ENTH   35 kelseiisvitkrLqn.nkgkewrsvlKaLtlieYLlknGse.......qvidwlkenisiiktlsefkyide.egkde 104 
                  +++s ii+     L    +++ + +  ++L ++ +L+ nG +       +  ++++++ + i+ l+++ +++e + kd+
  CDO69101.1 1075 VSFSSIIDESNDELYTgLRDSDMIVKKNTLMVLTHLILNGMVkvkgqmgELAKCVEDEDERISDLAKM-FFEElSTKDN 1152
                  5677777777777744567777777778**************67776666677777777777777666.3455455554 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0044
                  HHHHHHHHHTTSHHHHHHHHHHHHHHHHH..--GGGHHHHHHHHHHHHH CS
        ENTH   22 kllteiarltyskkelseiisvitkrLqn..nkgkewrsvlKaLtlieY 68  
                  ++++ i +   ++k+ ++i++ + +r+ +  +++++wr +  +L l+ +
  CDO69101.1 1179 STMKYIFKFIEKEKQAENIVEKLCQRF-RlsEDPRQWRDIAFCLSLLPF 1226
                  6899999999999***********998.3359************99865 PP

>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.26   3.9e+02      51      96 ..     381     429 ..     352     456 .. 0.61
   2 ?   -2.7   0.1       1.7   2.6e+03     255     287 ..     558     592 ..     541     596 .. 0.73
   3 ?    0.9   0.0      0.14     2e+02     203     279 ..     649     725 ..     638     740 .. 0.74
   4 ?   13.7   0.3   1.7e-05     0.026      38     129 ..    1020    1148 ..    1012    1193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.26
                 HHHHTT-HHHHHHHHHHHHHHHH...HS-HHHHHHHHHHHHHHHHHH-C CS
        Cnd3  51 glfclldkklakenlklflqals...kgneelkiialkaifDllllhgl 96 
                 + +c ++ k+ ++ l + + a+     + ++++  a+  ++ l+ +h++
  CDO69101.1 381 AKLCDVNTKFPQQRLAMTRAAVDaleDKSSNVRKAAVSLLVKLIVTHPY 429
                 4444444445555554444444444322455555555555555555555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                 ....--HHHHHHHHHHHHCCCS-T..HH.HHHHHH CS
        Cnd3 255 sekeeelhldlaleilkelekkes..keekkalik 287
                  + e++l+++++l+ l+++++ e+  k ++k+l++
  CDO69101.1 558 QHLEAKLKKKFCLDALEFIRTVEEgmKTVQKLLAS 592
                 2233678889*********9999988888888875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHCH--........-SHCHHHHHHHHHHHHT-GGGS---------TT.....--HHHHHHHHHHHHCCCS-T..H CS
        Cnd3 203 flptlrtllnapeespla.....eeevspskvleqlvdltdprklvnkteeeesksesekeeelhldlaleilkelekkes..k 279
                 +l + rt++       l+     + + +++++++ l+++t    l++ t  ee   +  +e ++h d++ ++ ++ +++ +  +
  CDO69101.1 649 LLECYRTIY-------LEpvmnlDAKQQVNRIAKNLIEMTYDATLAELTSLEELMRHLMEEGHIHEDVVNKLWQVYSSERPlpR 725
                 444444444.......44444456799**************9******999998888888899****99999998887766553 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.7e-05
                  SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS.-HHHHHHHHHHHHHHHHHH-CGGGGGGHH............................. CS
        Cnd3   38 keaairelglkcLglfclldkklakenlklflqalskg.neelkiialkaifDllllhglevldkekkedsd.eeeees.................. 114 
                  k++ +r ++  +++ f +++ ++++++ +l++++l+++ +++++   + a+ D++  +   ++d+ ++e     ++++                   
  CDO69101.1 1020 KNRTLRMAATLAFSKFLCVSSQFCEQHHRLLFKILETSkDPSIRSNIVIALGDVAVSFSS-IIDESNDELYTgLRDSDMivkkntlmvlthlilngm 1115
                  58899*******************************888*******************98.888777643333222222455555555555555555 PP

                  ......................HHHHHHHHHHC CS
        Cnd3  115 ..................essksllkllykaLd 129 
                                    e  ++l+k++ + L+
  CDO69101.1 1116 vkvkgqmgelakcvededERISDLAKMFFEELS 1148
                  555555555555555544444455555554444 PP

>> YtzH  YtzH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.54   8.1e+02      22      40 ..     661     679 ..     657     684 .. 0.85
   2 ?   10.1   0.0   0.00055      0.82      23      59 ..     684     720 ..     680     729 .. 0.91
   3 ?   -2.4   0.0       4.5   6.7e+03      22      54 ..    1037    1072 ..    1036    1079 .. 0.68
   4 ?   -1.8   0.0       2.8   4.2e+03      42      68 ..    1170    1197 ..    1128    1204 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.54
        YtzH  22 cgtvseceQierlvkslla 40 
                 ++ ++  +Q++r+ k+l++
  CDO69101.1 661 VMNLDAKQQVNRIAKNLIE 679
                 6888999*********987 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00055
        YtzH  23 gtvseceQierlvksllaneevdedvkqvLeeiYays 59 
                 +t++e   +e+l++ l+++ +++edv + L ++Y+  
  CDO69101.1 684 ATLAELTSLEELMRHLMEEGHIHEDVVNKLWQVYSSE 720
                 6899*****************************9865 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.5
        YtzH   22 cgtvseceQierlvkslla...neevdedvkqvLee 54  
                  c + + ceQ +rl+ ++l+   ++++ +++  +L +
  CDO69101.1 1037 CVSSQFCEQHHRLLFKILEtskDPSIRSNIVIALGD 1072
                  56667799*999998887622255666666666655 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.8
        YtzH   42 eev.dedvkqvLeeiYaysqegkssqsl 68  
                  +++ +e ++++++ i+++  + k+++++
  CDO69101.1 1170 HAIdEEAFQSTMKYIFKFIEKEKQAENI 1197
                  2343344666777777776666666665 PP

>> FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.7e-05      0.13      53      94 ..     162     204 ..     137     213 .. 0.74
   2 ?   -3.1   0.0       6.2   9.3e+03      76      92 ..    1180    1196 ..    1145    1216 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-05
   FKS1_dom1  53 eeileekvse.aaaseeeesfLkkvitPlyevlrkqeaeknke 94 
                 +++l+ k ++  ++s e e+f++ v++P+y+v++++++ k+ +
  CDO69101.1 162 SRVLHLKSQRiWQTSAERENFINCVVRPVYHVMENEQYMKSAD 204
                 4444444444567788999**************9999998665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
   FKS1_dom1   76 vitPlyevlrkqeaekn 92  
                   ++ ++++++k++ ++n
  CDO69101.1 1180 TMKYIFKFIEKEKQAEN 1196
                  34444444433333333 PP

>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.91   1.4e+03      26      65 ..     664     703 ..     662     705 .. 0.76
   2 ?   -2.0   0.0       3.2   4.8e+03      24      48 ..    1127    1152 ..    1114    1165 .. 0.67
   3 ?    7.9   0.0    0.0026       3.9      20      47 ..    1182    1209 ..    1177    1215 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.91
                 -SSSS-HHHHHHHHHHHC.T--HHHHHHHHHHHHHHHHCTT CS
        PqqD  26 ldgersveeivaalaeey.dvdeeeaeadvlafldqLrekg 65 
                 ld ++ v  i+++l e + d++ +e+   +++++++L e+g
  CDO69101.1 664 LDAKQQVNRIAKNLIEMTyDATLAEL-TSLEELMRHLMEEG 703
                 78877899*****9988879986555.67788888887777 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.2
                  HH-SSSS-.HHHHHHHHHHHCT--HH CS
        PqqD   24 klldgers.veeivaalaeeydvdee 48  
                  k++++e   ++++++ ++ee     +
  CDO69101.1 1127 KCVEDEDErISDLAKMFFEELSTKDN 1152
                  45555445688888888888754434 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0026
                  HHHHHH-SSSS-HHHHHHHHHHHCT--H CS
        PqqD   20 afiWklldgersveeivaalaeeydvde 47  
                  ++i+k +++e+  e iv++l++++  +e
  CDO69101.1 1182 KYIFKFIEKEKQAENIVEKLCQRFRLSE 1209
                  69*******9**************7664 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.21   3.1e+02      14      55 .]     291     328 ..     282     328 .. 0.72
   2 ?    3.8   0.1     0.056        83      36      52 ..     404     420 ..     391     423 .. 0.82
   3 ?   -3.3   0.1       9.8   1.5e+04       3      15 ..     727     739 ..     726     754 .. 0.75
   4 ?    3.4   0.0     0.076   1.1e+02      30      53 ..    1047    1071 ..    1023    1073 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.21
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                  a+ +p+++ +++  +l+ L      +++ + R a++  +g +
  CDO69101.1 291 YAELAPRQVLKQLALLLAHLD-----SESyPMRNAVVELIGSI 328
                 566667777777777777777.....888677****9999976 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.056
     HEAT_EZ  36 lLnddsdeVRaaAagaL 52 
                 +L+d+s++VR+aA+  L
  CDO69101.1 404 ALEDKSSNVRKAAVSLL 420
                 5778888******9877 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.8
     HEAT_EZ   3 vRraAawaLGrla 15 
                 +Rr+A+  LG la
  CDO69101.1 727 QRRGAVIILGMLA 739
                 6899999998855 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.076
     HEAT_EZ   30 lpaLlalLnddsd.eVRaaAagaLg 53  
                   ++L + L++++d ++R + ++aLg
  CDO69101.1 1047 HRLLFKILETSKDpSIRSNIVIALG 1071
                  4566677855555499********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1606  (0.0895755); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.52
# Mc/sec: 7688.15
//
Query:       CDO69102.1  [L=89]
Description: hypothetical protein BN946_scf185042.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-31  107.9   0.3    2.6e-31  107.7   0.3    1.1  1  RNA_pol_N  RNA polymerases N / 8 kDa subunit


Domain annotation for each model (and alignments):
>> RNA_pol_N  RNA polymerases N / 8 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.3   1.5e-35   2.6e-31       1      59 []      14      72 ..      14      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.5e-35
                ----SS-TTT--B-STHHHHHHHHHHTT--HHHHHHHHT--SHHHHHHHHTB--THHHH CS
   RNA_pol_N  1 MiiPVrCFtCGkvigekweeylellekgeepkdaLdaLglkryCCrrmllthvdliekl 59
                MiiPVrCF+CGkv+g+kw++ylell ++  ++daLd+L+lkryCCrrm+lthvdliekl
  CDO69102.1 14 MIIPVRCFSCGKVVGDKWNAYLELLANDVAEGDALDQLQLKRYCCRRMVLTHVDLIEKL 72
                9********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 582.35
//
Query:       CDO69103.1  [L=272]
Description: hypothetical protein BN946_scf185042.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-21   77.2   0.0      1e-14   54.6   0.0    2.1  2  Oxidored_FMN   NADH:flavin oxidoreductase / NADH oxidase fami
     0.0023   17.1   0.0     0.0034   16.5   0.0    1.1  1  Dus            Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
      0.024   15.0   0.2        2.8    8.3   0.0    2.8  3  Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
       0.12   11.4   0.6       0.17   10.9   0.6    1.1  1  FMN_dh         FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.6e-08   0.00012       2      58 ..      43      97 ..      42      99 .. 0.81
   2 !   54.6   0.0   2.3e-18     1e-14     193     338 ..      98     247 ..      95     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.6e-08
                  CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEE CS
  Oxidored_FMN  2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaa 58
                  LFkP+ki  ++ +nRi  +p+++++ +d+g v e ++ ++      ++ +l i+ea+
    CDO69103.1 43 LFKPLKIRGVEFQNRIWLSPLCQYS-SDNGVVQE-WQHAHLGGIFTRGPGLTIVEAT 97
                  9**********************97.58895555.9999987766667777777765 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 2.3e-18
                   TTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STT......S--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTT. CS
  Oxidored_FMN 193 eygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvek......gldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqe. 281
                    ygGs enR+r ++evvdaV+ ++   + ++ R+S+++  e+         + +t   + +l+e +++l+d+++     a++       ++   ++ 
    CDO69103.1  98 AYGGSFENRIRLAVEVVDAVRAVIPPTMpLFFRVSASEWLEEvfpnepSWRSEDTVRLAGVLAEHGVDLIDVSSSGNHPAQK-I-----KTGPAYQa 188
                   59**********************************9876541111113344455777777777777777766655433333.2.....23333555 PP

                   HHHHHHCCCHSSEEE..E-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCC CS
  Oxidored_FMN 282 kntefvkevwkkpli..tvgriadeekaaeivaegeadLvamgRefladpdlveklkkg 338
                   +++e vk    + ++  +vg i+d + a+ ++ +g+ad+v++gR f  +p lv k + +
    CDO69103.1 189 HFAEAVKRAHGDKILvsAVGAINDGQLAQSVLDKGQADVVFVGRMFQKNPGLVWKFADD 247
                   777888876655543239***********************************998766 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.5e-07    0.0034     137     223 ..     149     241 ..     145     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.5e-07
                 TC.HHHHHHHHHHCT-SEEEEESS..ECCCTT-C.G--CHHH.HHHHHH-S..S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHH CS
         Dus 137 eenalelakiveaaGaqaltvHgR..traqnyeg.tadweaI.kevkqavs..ipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlf 223
                 +e++++la  + + G++ + v      +aq+ +  +a+ ++  ++vk+a    i v a G+I d + aq +l++  ad v +gr  ++nP l+
  CDO69103.1 149 SEDTVRLAGVLAEHGVDLIDVSSSgnHPAQKIKTgPAYQAHFaEAVKRAHGdkILVSAVGAINDGQLAQSVLDKGQADVVFVGRMFQKNPGLV 241
                 56778888888888888888765444667776666666665515677777789*************************************997 PP

>> Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.7   1.2e+04       9      22 ..      85      98 ..      81     112 .. 0.72
   2 ?    8.3   0.0   0.00062       2.8      36      72 ..     145     181 ..     127     187 .. 0.80
   3 ?    3.6   0.1     0.019        84      42      63 ..     211     233 ..     188     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.7
                   CCC-SEEEEEEESS CS
  Nitro_FeMo-Co  9 FGrapyFaiyevee 22
                   F r p ++i+e + 
     CDO69103.1 85 FTRGPGLTIVEATA 98
                   77888888888764 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00062
                    CCTSSCSSTHHHHHHHHTT-SEEEESSSCHHHHHHHC CS
  Nitro_FeMo-Co  36 adaegggggklaqllaeegvdvvivgkiGpralakle 72 
                     + ++++  +la +lae+gvd++ v++ G ++++k++
     CDO69103.1 145 PSWRSEDTVRLAGVLAEHGVDLIDVSSSGNHPAQKIK 181
                    44455788899**********************9987 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.019
                    SSTHHHHHHHH.TT-SEEEESSS CS
  Nitro_FeMo-Co  42 gggklaqllae.egvdvvivgki 63 
                    ++g+laq++ +   +dvv+vg++
     CDO69103.1 211 NDGQLAQSVLDkGQADVVFVGRM 233
                    567888888886999******98 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   3.8e-05      0.17     232     303 ..     158     234 ..     150     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.8e-05
                 HHHHTTESEEEE-...-GGGTSSTT---HHHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT.-SEEEESHHH CS
      FMN_dh 232 raveaGvdgivvS...NHGGRqldgapatidvLpeiveavgg.rievlvDgGirrGsDvlkAlalG.AdavllGRpf 303
                  ++e+Gvd i vS   NH + ++ + pa      e v+++ g +i v + g i  G+ +   l  G Ad+v++GR f
  CDO69103.1 158 VLAEHGVDLIDVSssgNHPAQKIKTGPAYQAHFAEAVKRAHGdKILVSAVGAINDGQLAQSVLDKGqADVVFVGRMF 234
                 578**********7888889999999999888888877666538**********************9********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1791.87
//
Query:       CDO69104.1  [L=287]
Description: hypothetical protein BN946_scf185042.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-12   44.9   0.0    1.3e-11   44.4   0.0    1.2  1  adh_short     short chain dehydrogenase
    5.5e-08   32.7   0.0    8.3e-08   32.1   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.23   11.3   0.0    1.4  1  DUF2706       Protein of unknown function (DUF2706)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   2.1e-15   1.3e-11      76     185 ..     114     226 ..      76     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.1e-15
                 SSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.....TSB-TTBHHHHHHHHHHHHHHHHHHHHHGG CS
   adh_short  76 gkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvag.....kvpvagvaaYsAsKaavagltrslakelap 169
                  +ld LvnNA++    ++  l+ ee  rv+ +N  g+ l+++ +lp + k+s+  +  +sS+ g     k     v++Y+ sKaa+++l+ + + e  +
  CDO69104.1 114 VGLDYLVNNAAVLIYDTAFTLDPEELLRVLRTNAAGPALVSQICLPFLEKGSRKMVLHISSTEGsldtiKHIGSRVTSYAMSKAALNMLALKQKAERPD 212
                 369*********9999999*********************************************42222223456899***********8776666655 PP

                 GTEEEEEEEESSBSSH CS
   adh_short 170 tgirvnavaPGlvdTd 185
                     + +++PG v+T+
  CDO69104.1 213 --FIILTMCPGWVRTG 226
                 ..588999****9996 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.4e-11   8.3e-08      69     153 ..     115     204 ..     101     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.4e-11
                   SEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGT.SBSTTTT....HHHHHHHHHHHHHH CS
  adh_short_C2  69 klDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgae.rvvpnyn....aygaaKaalealtr 153
                   +lD+lvnna++       + +++ ee+ r+l +n+ + +l+++ +lp +++g    ++++ss+ ++  ++++       y+++Kaal+ l+ 
    CDO69104.1 115 GLDYLVNNAAVLIY--DTAFTLDPEELLRVLRTNAAGPALVSQICLPFLEKGsrKMVLHISSTEGSlDTIKHIGsrvtSYAMSKAALNMLAL 204
                   69************..99999**************************999997777999**996652334433333459********99864 PP

>> DUF2706  Protein of unknown function (DUF2706)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05      0.23      34      56 ..      61      83 ..      58      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
     DUF2706 34 svdiddnsslsinPcirrPinav 56
                s +i d s+ si P  rrP++av
  CDO69104.1 61 SSEIGDRSAASISPGKRRPLDAV 83
                6789******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2183.30
//
Query:       CDO69105.1  [L=260]
Description: hypothetical protein BN946_scf185042.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-23   82.5   0.1    4.8e-23   81.6   0.1    1.4  1  adh_short       short chain dehydrogenase
    1.6e-15   57.3   0.0    3.8e-14   52.8   0.0    2.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    6.6e-05   22.9   0.2    0.00028   20.9   0.1    1.9  2  KR              KR domain
    0.00024   21.0   0.1    0.00073   19.5   0.0    1.8  2  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.1   1.1e-26   4.8e-23       4     188 ..      11     221 ..       8     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.1e-26
                 EEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S........... CS
   adh_short   4 lvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi........... 87 
                 lv G s+GIG++i+k+l+++  ++v+ + r++ek+ +v++ lk++ + +++++q+Dv+d ++++a+  + ++ l   +ld L+n+A +           
  CDO69105.1  11 LVNGTSRGIGLEIVKQLVASPDNLVIaTCRNPEKA-TVLSDLKATaKGTLHIVQIDVSDFTAIRAAGPQLESILgdVGLDYLINCAVVvrgisrtanss 108
                 899****************9999888566666666.*********999**************************44468*******9999998888877 PP

                 .........S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB.....-TTBHHHHHHHHHHHHHHHHHHHHHGGGTE CS
   adh_short  88 .........tgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvp.....vagvaaYsAsKaavagltrslakelaptgi 172
                           ++ ++  ++ e+   ++ +N  g+  l++ vlp + k+++  I n+sS+ g  +      + +++Y+  Kaa+++lt  l++ +a+   
  CDO69105.1 109 dhptsvlaqLHQDTAFTMDPEDLLHSMRTNALGAAVLAQVVLPFLEKGRKKVILNISSTGGSLHhavrvGPKYTSYAMCKAALNMLT--LKQSVARPDF 205
                 77776666533333445666667777*********************************99655122225678999*********98..7888999999 PP

                 EEEEEEESSBSSHHHH CS
   adh_short 173 rvnavaPGlvdTdmak 188
                  v++++PG v+Td+  
  CDO69105.1 206 IVMSLCPGRVKTDLGG 221
                 ************9865 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   8.5e-18   3.8e-14       1     179 [.      14     220 ..      14     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 8.5e-18
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EG.......... CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekf..gklDilvnnagiapk.......... 82 
                   G  +gIG +i+k+l +   ++v++  ++ + +  + +l++  + +  ++++DV+d ++++a+  ++++ +   +lD+l+n+a +++           
    CDO69105.1  14 GTSRGIGLEIVKQLVASPDNLVIATCRNPEkATVLSDLKATAKGTlhIVQIDVSDFTAIRAAGPQLESILgdVGLDYLINCAVVVRGisrtanssdh 110
                   7789**********9999998887777777588889999988877546**********************44479******9665544444888888 PP

                   ........CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGT.....SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTE CS
  adh_short_C2  83 ........lkgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgae.....rvvpnynaygaaKaalealtrylAvelgpkgi 164
                            +  + +++ e++ + + +n+ +++ la+ +lp +++g    i+n+ss+g++     rv p+y+ y+++Kaal+ lt      +++   
    CDO69105.1 111 ptsvlaqlHQDTAFTMDPEDLLHSMRTNALGAAVLAQVVLPFLEKGrkKVILNISSTGGSlhhavRVGPKYTSYAMCKAALNMLTLKQS--VARPDF 205
                   8898888445556678*************************999998889******97543333399*****************97765..455567 PP

                   EEEEEEE--BHCTGG CS
  adh_short_C2 165 RvNavspgpikTlaa 179
                    v + +pg +kT++ 
    CDO69105.1 206 IVMSLCPGRVKTDLG 220
                   789999999999875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.2e-08   0.00028       3      93 ..      10      99 ..       8     117 .. 0.80
   2 ?   -0.1   0.0      0.16   7.3e+02      94     143 ..     120     173 ..     113     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.2e-08
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE------ CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlr 93
                 l+ G   g+Gle++++l+++  + ++ + R+    +++++ ++ l+a+   + ++v++Dvsd +a++a+  ++++      +   i++A+v+r
  CDO69105.1 10 WLVNGTSRGIGLEIVKQLVASPDNLVIATCRN----PEKATVLSDLKATaKGTLHIVQIDVSDFTAIRAAGPQLESILgdVGLDYLINCAVVVR 99
                799*******************9999999999....45666788888875679***************99887776554456677777777766 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
                 ---TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH-- CS
          KR  94 dklleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgs 143
                 +++  +m+ edl + ++    Ga +L +++ +     + ++++ +SS +g l +
  CDO69105.1 120 QDTAFTMDPEDLLHSMRTNALGAAVLAQVVLPflekGRKKVILNISSTGGSLHH 173
                 445557899999999999999999999987655544666777777777776655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-07   0.00073       1      57 [.      14      75 ..      14      86 .. 0.85
   2 ?   -2.4   0.0      0.82   3.7e+03      77      88 ..     229     245 ..     187     253 .. 0.46

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.6e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH...HHH..CTTTCEEEE--TT-CCHHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekla...ele..aeeglevvegdvtdvedlaea 57
                    G + ++G ++vk+l+a+ +  v a  Rnpek++   +l+  a+  l++v++dv+d  ++++a
      CDO69105.1 14 GTSRGIGLEIVKQLVASPDNLVIATCRNPEKATvlsDLKatAKGTLHIVQIDVSDFTAIRAA 75
                    56789*************8899**********844433344668999********9999987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.82
                     H.....HHHHHHHHHHC CS
  NAD_binding_10  77 g.....aknivdaakea 88 
                     +       ++v+aa ++
      CDO69105.1 229 AesvagILKVVTAATKE 245
                     13334444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1759.87
//
Query:       CDO69106.1  [L=240]
Description: hypothetical protein BN946_scf185042.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-31  109.3   0.0    1.9e-31  109.1   0.0    1.1  1  adh_short       short chain dehydrogenase
    9.2e-21   74.5   0.0    1.1e-20   74.2   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    4.2e-09   36.6   0.0    5.2e-09   36.3   0.0    1.1  1  KR              KR domain
    1.2e-05   25.3   0.1    3.2e-05   23.9   0.1    1.6  2  NAD_binding_10  NAD(P)H-binding
    0.00031   20.3   0.0    0.00042   19.9   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0057   15.9   0.0      0.031   13.5   0.0    2.0  1  NAD_binding_4   Male sterility protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   6.4e-35   1.9e-31       3     191 ..      10     204 ..       8     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 6.4e-35
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SSGGGCSH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsgpfselse 98 
                  lvtGas+GIG +++++l+++  ++vv++ ++ + ++++++lk++ + +++++q+Dv+d ++++a  ++ +  l   +ld LvnNAG+  + ++  l+ 
  CDO69106.1  10 WLVTGASRGIGFELVRQLVASPENLVVAACRNPAKATALNNLKALaKGTLHVVQIDVSDFDSIRASAKQLEPILgeLGLDYLVNNAGVLYPDTAFTLDP 108
                 59**********************9997766666779********999**************************33358*********9999999**** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB.....-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvp.....vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 e+  +++ +N  g+ ll++ +lp + k+++  I  +sS+ g  +      a +a+Y+ sKaa+++lt + + e  +   +v +++PG v+Tdm  ++ 
  CDO69106.1 109 ETLLETVRTNAAGPALLSQVCLPFLEKGRRKVILHISSTGGSLQttlgvGARLASYCMSKAALNMLTLKQKAE--RPDLTVLTMCPGWVKTDMGGKEA 204
                 ***************************************9965512222467899***********9766555..5558**************98765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   3.8e-24   1.1e-20       1     181 [.      14     202 ..      14     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 3.8e-24
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHS..SEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfg..klDilvnnagiapklkgpfletsr 92 
                   Ga +gIG++++++l +   ++v++  ++ a + ++++l++  + +  v+++DV+d ++++a +++++  +g  +lD+lvnnag+  +    + +++ 
    CDO69106.1  14 GASRGIGFELVRQLVASPENLVVAACRNPAkATALNNLKALAKGTlhVVQIDVSDFDSIRASAKQLEPILGelGLDYLVNNAGVLYP--DTAFTLDP 108
                   999*************99999988888888678888888877766557**********************72358************..99999*** PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGT.....SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg..gsivnlssvgae.....rvvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181
                   e + +++ +n+ + +ll++ +lp +++g    i+++ss+g++      v +  + y+++Kaal+ lt    +   +   +v + +pg++kT++  +
    CDO69106.1 109 ETLLETVRTNAAGPALLSQVCLPFLEKGrrKVILHISSTGGSlqttlGVGARLASYCMSKAALNMLTLKQKA--ERPDLTVLTMCPGWVKTDMGGK 202
                   ***********************999998888*******876222223466677************977644..45679**************654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.7e-12   5.2e-09       2     143 ..       9     153 ..       8     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.7e-12
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE---------T CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlrdkll 97 
                 t l+tG+  g+G el+r+l+++ ++ +v   R+ +a+++    +++l+al   + +vv++Dvsd d+++a  ++++       +   ++ Agvl  ++ 
  CDO69106.1   9 TWLVTGASRGIGFELVRQLVASPENLVVAACRN-PAKAT---ALNNLKALaKGTLHVVQIDVSDFDSIRASAKQLEPILgeLGLDYLVNNAGVLYPDTA 103
                 78********************99999999999.44444...56666665446999*******************98775567899************* PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH-- CS
          KR  98 eemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgs 143
                  +++ e+l + ++   +G   L +++ +     + ++++ +SS +g l +
  CDO69106.1 104 FTLDPETLLETVRTNAAGPALLSQVCLPflekGRRKVILHISSTGGSLQT 153
                 ************************99776665778888888988887655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.1e-08   3.2e-05       1      59 [.      14      77 ..      14      97 .. 0.88
   2 ?   -1.3   0.0      0.58   1.7e+03     129     160 ..     178     209 ..     134     226 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE--TT-CCHHHHHHT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevvegdvtdvedlaealk 59
                    GA+ ++G +lv++l+a+ +  v+a  Rnp+k+++l      a+  l+vv++dv+d +++++  k
      CDO69106.1 14 GASRGIGFELVRQLVASPENLVVAACRNPAKATALNnlkalAKGTLHVVQIDVSDFDSIRASAK 77
                    9*****************88899*********97654545567899*************98766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.58
                     HHHHHSSSEEEEEEE-CEE-ST--SEEEEETT CS
  NAD_binding_10 129 ellrasgldwTivrpggLtdepttkyrvvekg 160
                     +  ++ +l+   ++pg+ + + ++k   +e +
      CDO69106.1 178 QKAERPDLTVLTMCPGWVKTDMGGKEAQLEPE 209
                     33455678888888888877765554444444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.4e-07   0.00042       1     116 [.      10     147 ..      10     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.4e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HH.......HHHHHHHHHT-SEEEE--S---HHHHHH... CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrs.......alerlfkeeqpdavihlAavggvaasse... 82 
                 +lVtGa+  iG  lv++l +   ++++ + ++ a++ta+++ +       ++v++d+ d +       +le ++ e + d+ ++ A+v  +++ ++   
  CDO69106.1  10 WLVTGASRGIGFELVRQLVASPENLVVAACRNPAKATALNNLKalakgtlHVVQIDVSDFDsirasakQLEPILGELGLDYLVNNAGVLYPDTAFTldp 108
                 59********************99777777767777666665578**************9955555556666777778899999999888887775211 PP

                 .SHHHHHHHHTHHHHHHHHHHH...HHTCT.EEEEEEEG CS
   Epimerase  83 .dpadfieknlqgtlnlleaar...kagvk.rllflsSs 116
                  +  +++++n++g   l +++    ++g +  +l++sS+
  CDO69106.1 109 eTLLETVRTNAAGPALLSQVCLpflEKGRRkVILHISST 147
                 134567788999998888888866633333257777774 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     1e-05     0.031       1     152 [.      12     162 ..      12     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TGa+  +G  L+++L+ + ++  +++ +R+  +++a++ l ++l+k  l  + +    +    + +  ++ +  L e  l+ l+++  v +   A
     CDO69106.1  12 VTGASRGIGFELVRQLVASPEN-LVVAACRNPAKATALNNL-KALAKGTLHVVQI--DVSDFDSIRASAKQLEPILGELGLDYLVNNAGVLYPDTA 103
                    79***99************998.9999**************.8888888876665..455555566666665556666666779999999999999 PP

                    S-S.STTSSEEHHHHHHHHHHHHHHHT....SSS--.-EEEEEEGGGTTS-TTT--SSS- CS
  NAD_binding_4  97 tvnfdepykellrvNveGtrevlelak....klkklkvllhvSTayvngeregeveekvy 152
                     +   e++ e +r+N  G   + + +     k++++ v+lh+S+   + + +  v  ++ 
     CDO69106.1 104 FTLDPETLLETVRTNAAGPALLSQVCLpfleKGRRK-VILHISSTGGSLQTTLGVGARLA 162
                    999999999999999999999999998777677777.99999984444444434445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1619.94
//
Query:       CDO69107.1  [L=254]
Description: hypothetical protein BN946_scf185042.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-24   85.7   0.1    1.3e-15   57.4   0.0    2.1  2  adh_short        short chain dehydrogenase
    4.7e-14   52.5   0.1    5.5e-13   49.0   0.1    2.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      3e-07   30.5   0.1    5.2e-06   26.5   0.0    2.1  2  NAD_binding_10   NAD(P)H-binding
    4.7e-07   29.9   0.0      8e-07   29.1   0.0    1.4  1  KR               KR domain
    0.00096   18.7   0.0     0.0022   17.5   0.0    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0027   16.9   0.0      0.047   12.9   0.0    2.1  2  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.053   12.6   0.0      0.075   12.2   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.063   12.3   0.0      0.082   11.9   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   5.9e-19   1.3e-15       3      96 ..      10     106 ..       8     115 .. 0.87
   2 !   26.3   0.0   1.9e-09   4.3e-06     130     189 ..     154     216 ..     152     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 5.9e-19
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SSGGGC CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsgpfsel 96 
                  lvtGas+GIG +i+k+l+++  ++vv++ ++ + ++++++lk+  + +++++q+Dv+d ++++a+ ++ +  l   +ld LvnNA+i +++++s++
  CDO69107.1  10 WLVTGASRGIGCEIVKQLLASPENLVVAACRNPDKATALNNLKASaKGTLHVLQMDVSDFDSIRAAAKQLEPILgeVGLDYLVNNAAIVRVSSISST 106
                 59********************999997766666779999***99999**************************33357*********777666655 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.9e-09
                 EEEEEEEGGGTSB-.....TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 130 rIvnvsSvagkvpv.....agvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +I  +sS+ag  ++       va+Ys sKaa+++lt + + e  +   +v++++PG v+Tdm  +
  CDO69107.1 154 SILHISSTAGSLQSverlgSRVASYSMSKAALNMLTLKQKSERPD--LTVITLCPGWVKTDMGGK 216
                 68999999996554111124689************9777666555..8**************876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   2.4e-16   5.5e-13       1     181 [.      14     216 ..      14     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.4e-16
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHS..SEEEEEE-----EG..CSS-GGGH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfg..klDilvnnagiapk..lkgpflet 90 
                   Ga +gIG +i+k+l +   ++v++  ++ + + ++++l+++ + +  vl++DV+d ++++a++++++  +g  +lD+lvnna+i++   +++ ++  
    CDO69107.1  14 GASRGIGCEIVKQLLASPENLVVAACRNPDkATALNNLKASAKGTlhVLQMDVSDFDSIRAAAKQLEPILGevGLDYLVNNAAIVRVssISSTTAPS 110
                   999**********9999888777776666659999***9999977557**********************62369***********96655555556 PP

                   -HHHHHHHHHH....HT.HHHHHHHHHHHH...HCTSC.......CEEEEEEEGGGT.....SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEE CS
  adh_short_C2  91 sreefdraldv....nl.yslfllakaalp...lmkeg.......gsivnlssvgae.....rvvpnynaygaaKaalealtrylAvelgpkgiRvN 167
                    r  f r l++    ++ +s   l+    +                si+++ss++++     r  +  + y+++Kaal+ lt     e  +   +v 
    CDO69107.1 111 HRFAFLRLLSTppsvSTqRSSCELCASTPQxxxX---XxxvvpwaVSILHISSTAGSlqsveRLGSRVASYSMSKAALNMLTLKQKSE--RPDLTVI 202
                   6677777776433112112333333333332320...135666689*******9664211114455666************9776555..567**** PP

                   EEEE--BHCTGGGG CS
  adh_short_C2 168 avspgpikTlaasg 181
                   + +pg++kT++  +
    CDO69107.1 203 TLCPGWVKTDMGGK 216
                   ***********654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.3e-09   5.2e-06       1      60 [.      14      78 ..      14     104 .. 0.89
   2 ?    2.2   0.0     0.064   1.4e+02      96     163 ..     159     226 ..     152     245 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.3e-09
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE--TT-CCHHHHHHTT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevvegdvtdvedlaealkg 60
                    GA+ ++G ++vk+lla+ +  v+a  Rnp+k+++l      a+  l+v+++dv+d +++++a k+
      CDO69107.1 14 GASRGIGCEIVKQLLASPENLVVAACRNPDKATALNnlkasAKGTLHVLQMDVSDFDSIRAAAKQ 78
                    9*****************88899*********97655545466899****************986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.064
                     EEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEEETTSS- CS
  NAD_binding_10  96 vsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdepttkyrvvekgepf 163
                      s++g+ ++v++  +++++  +++++  +    +  ++ +l+   ++pg+ + + ++k   +e +e++
      CDO69107.1 159 SSTAGSLQSVERLGSRVASYSMSKAALNMLTLKQKSERPDLTVITLCPGWVKTDMGGKDAQLEPEESV 226
                     5667777777766666666666666677777777777889***********88876665555555544 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.6e-10     8e-07       2     101 ..       9     107 ..       8     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.6e-10
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE---------T CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlrdkll 97 
                 t l+tG+  g+G e++++l+++ ++ +v   R+    +d+++ +++l+a+   + +v+++Dvsd d+++a+ ++++       +   ++ A ++r + +
  CDO69107.1   9 TWLVTGASRGIGCEIVKQLLASPENLVVAACRN----PDKATALNNLKASaKGTLHVLQMDVSDFDSIRAAAKQLEPILgeVGLDYLVNNAAIVRVSSI 103
                 78*******************999888888888....56667799999875779********************9866544556667777777777777 PP

                 TT-- CS
          KR  98 eemt 101
                 +++t
  CDO69107.1 104 SSTT 107
                 6666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.9e-07    0.0022       1      65 [.      10      81 ..      10     109 .. 0.71
   2 ?   -2.5   0.0       1.3   2.8e+03     140     162 ..     176     199 ..     166     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.9e-07
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqp 65
                +lVtGa+  iG  +vk+ll+   ++++ + ++ +++ta+++ +       ++ ++d+ d ++++++ k+ +p
  CDO69107.1 10 WLVTGASRGIGCEIVKQLLASPENLVVAACRNPDKATALNNLKasakgtlHVLQMDVSDFDSIRAAAKQLEP 81
                59********************996666666555555544444699**9*9999****99977766665433 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                 SHHHHHHHHHHHHHHHHHHHH.T- CS
   Epimerase 140 spYaaaKlageklveayaaqy.gl 162
                   Y+++K+a   l+ + + +  +l
  CDO69107.1 176 ASYSMSKAALNMLTLKQKSERpDL 199
                 679999999888877766655455 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.1e-05     0.047       1      74 [.      12      91 ..      12     107 .. 0.82
   2 ?    2.3   0.0     0.034        77     165     209 ..     167     224 ..      92     240 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHH........HHTTTEEEEE--TTSGGG CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallk........elaerikvveGDlseprl 74
                   +TGa+  +G+ ++++LL + ++  +++ +R+ ++++a++ l+++ + +    ++ +         +a++++++ G++  ++l
     CDO69107.1 12 VTGASRGIGCEIVKQLLASPEN-LVVAACRNPDKATALNNLKASAKGTLHVLQM-DvsdfdsirAAAKQLEPILGEVGLDYL 91
                   79*****************998.999***************6665443322222.256788888889999999999988776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.034
                    EEEETTTCCCHHHHHHHHHHHH.HHHHHHHH---EEEEEE-EEE-............- CS
  NAD_binding_4 165 eraklkglpntYeqsKalaEkl.vrearrrsglpvvivRpsiitg............e 209
                    + ++l++    Y+ sKa+  +l ++++++r +l v+ + p+ + +            e
     CDO69107.1 167 SVERLGSRVASYSMSKAALNMLtLKQKSERPDLTVITLCPGWVKTdmggkdaqlepeE 224
                    5556666677899999999987356666777788888888888775555555554444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.3e-05     0.075       2      93 ..      11     103 ..      10     110 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH.......-TTEEEE....E--TT-.HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeieke.leeelkkkklkveivpvigdvrd.kerlekaleelkvdvvfhaAAlKhVPlv 93 
                      lvtGa+  iG e+v+q+l++  + ++   r+  k  ++++   +++ + + l+++ v+   ++r  +++le +l e++ d++++ AA+ +V  +
       CDO69107.1  11 LVTGASRGIGCEIVKQLLASPENLVVAACRNPDKATALNNLkASAKGTLHVLQMD-VSDFDSIRAaAKQLEPILGEVGLDYLVNNAAIVRVSSI 103
                      8****************98655555555555555555555422222233334333.55666776525678888899999999999998888665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05     0.082       1      68 [.      11      80 ..      11      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrlee...lkevrvlDlrespelleelskvnvkk..viegDvtdkdkleealegvd 68
                +vtG++  +G ++vk+L+   e   +   r  D+++  +    l+ +   +  v++ Dv d d++++a ++ +
  CDO69107.1 11 LVTGASRGIGCEIVKQLLASPEnlvVAACRNPDKATALNN---LKASAKGTlhVLQMDVSDFDSIRAAAKQLE 80
                69****************9987233334444454444444...3333333344**************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1710.09
//
Query:       CDO69108.1  [L=629]
Description: hypothetical protein BN946_scf185042.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00017   21.4   0.3    0.00057   19.7   0.3    2.0  1  F-box-like  F-box-like
      0.001   18.9   0.3     0.0023   17.8   0.3    1.6  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   6.3e-08   0.00057       2      46 ..       9      53 ..       8      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.3e-08
  F-box-like  2 srLPdEiLlq.IFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                +rLP++iLl+ + syL+  d+lrl++V+   ++++++   +W+rl 
  CDO69108.1  9 DRLPNDILLDgVMSYLDIFDILRLRRVSVLYYELTHHA-AVWKRLL 53
                79*******8899*********************9776.*****85 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   2.6e-07    0.0023       2      30 ..       7      36 ..       6      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.6e-07
                HHHHS-HH.HHHHHHHTS-HHHHHHHCTT- CS
       F-box  2 tlsrLPse.vlrhILerLplsdllalrrVS 30
                +l+rLP++ +l  ++++L+  d+l+lrrVS
  CDO69108.1  7 CLDRLPNDiLLDGVMSYLDIFDILRLRRVS 36
                689*****99999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 4232.12
//
Query:       CDO69109.1  [L=2111]
Description: hypothetical protein BN946_scf185042.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-35  122.8   0.1    2.6e-35  121.9   0.1    1.5  1  AAA_12         AAA domain
    2.1e-27   96.5   0.0    1.8e-26   93.5   0.0    2.4  2  AAA_11         AAA domain
    3.3e-11   43.7   0.0    5.2e-08   33.4   0.0    2.6  2  AAA_19         AAA domain
    7.6e-10   38.8   0.0    2.5e-06   27.3   0.0    2.4  2  AAA_30         AAA domain
      4e-06   26.5   7.5      4e-06   26.5   7.5    2.4  3  zf-CCCH_4      CCCH-type zinc finger
    1.6e-05   24.7   6.9    1.6e-05   24.7   6.9    2.6  2  zf-CCCH        Zinc finger C-x8-C-x5-C-x3-H type (and similar
    0.00034   20.5   7.9    0.00034   20.5   7.9    2.7  2  zf_CCCH_4      Zinc finger domain
     0.0018   17.6   0.0       0.46    9.7   0.0    2.4  2  DUF2075        Uncharacterized conserved protein (DUF2075)
      0.005   16.4   0.1      0.035   13.6   0.1    2.2  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.024   14.0   0.0    1.5  1  ATPase         KaiC
      0.034   14.0   0.0       0.13   12.2   0.0    2.1  1  UvrD_C_2       UvrD-like helicase C-terminal domain
      0.036   14.5   0.0      0.092   13.2   0.0    1.7  1  AAA            ATPase family associated with various cellular
      0.039   14.5   0.0       0.23   12.0   0.0    2.3  2  AAA_18         AAA domain
      0.061   13.7   0.1       0.47   10.8   0.0    2.5  2  AAA_16         AAA ATPase domain
       0.09   12.8   0.0       0.19   11.7   0.0    1.5  1  ResIII         Type III restriction enzyme, res subunit
       0.11   12.3   0.0       0.26   11.2   0.0    1.5  1  ATPase_2       ATPase domain predominantly from Archaea
       0.15   12.8   0.5        8.2    7.2   0.0    2.7  2  Torus          Torus domain
       0.15   12.1   0.0        0.4   10.7   0.0    1.7  1  AAA_5          AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.1   2.6e-38   2.6e-35       1     198 [.    1168    1387 ..    1168    1388 .. 0.89

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 2.6e-38
      AAA_12    1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvk 97  
                  ++rSl+erl++++  +++ +++q Rm+p+Is+f ++ +Y  kL+d++ v+++++      +  ++ +vf++  ++e  ++++  s++N+ E+e++ +
  CDO69109.1 1168 FDRSLMERLVDNG-FQMSQINVQRRMRPTISHFIRTILYP-KLEDNTLVHDYPSV-----QGMQKDVVFFNHLNKEGGSDDS-VSKYNMFEVEMIRD 1256
                  589**********.99***********************8.89999999999888.....7888889999998887777775.9************* PP

      AAA_12   98 lvekllkkgseeerkkigvitpYraqvellkkklkekeeekseke.........................ievntvdgfQGrekdviilslVRsn.. 167 
                  lv ++l++g  +   +i+v++ Y  q++ ++ +l++ + +  + e                         ++ +tvd fQG+e +++i+slVR++  
  CDO69109.1 1257 LVIYFLRQGRYSGPGDIAVLCAYLGQLQKVRAALRDMKISVAVDErdaeqlalqgidedidfeevlvtrhVRLGTVDIFQGQEAKIVIVSLVRNSgq 1353
                  ***********999*********************84443333335566677778888888888899999************************877 PP

      AAA_12  168 ...ekkeigflkderrlNValTRAkskliivGnk 198 
                      + +igflk+++r+NVal+RAk+ l+++Gn+
  CDO69109.1 1354 cdtGSASIGFLKSSNRINVALSRAKHGLYVMGNA 1387
                  7556668*************************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   1.8e-29   1.8e-26       3     258 ..     753    1150 ..     751    1152 .. 0.80
   2 ?   -3.0   0.0       4.9   4.9e+03     124     188 ..    2000    2064 ..    1974    2084 .. 0.76

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.8e-29
      AAA_11    3 ndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeer 99  
                  + sq++a+  +  ++ ++liqGPPGtgK+ t  e++++l         +s+ + i + a +N A D++l  +l+       + ++ k+vR+g  +  
  CDO69109.1  753 DPSQADAVVDTFVRE-VSLIQGPPGTGKSYTAKEIIRVL----F----ASKIRPIVLIAFTNHALDHMLTSVLD-------AGITDKLVRLGTRS-- 831 
                  678999986666655.48*********************....4....7889999999****************.......9999*********9.. PP

      AAA_11  100 iseavksvsleekvekrlekee........................................................kaqlakeiskeleklakel 140 
                  ++e++++++l++  +   + ++                                                                           
  CDO69109.1  832 SDERISQYTLDKLEKIAATTQMdrafkrqyatmkkleeqmsevmtsirlplvswdtietyldihypehadsfrmppfwI------------------ 910 
                  5777777776554333332222223333334444555555555555555555555555555555555555555555551.................. PP

      AAA_11  141 rafeeeeek........................................................................................ 149 
                          +                                                                                        
  CDO69109.1  911 --------Sdlsslmwaeeeqlgewqeakkksskkketvdgsvsrtlygfwragkdldflqlppaesrqspkgkeiappesayvdlesslltdraaf 999 
                  ........0555555555555555555555555556667788999**************************************************** PP

      AAA_11  150 ..........................................eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTls 204 
                                                            + ++k +++  +++ q  ++l++e k+  k++e  +++ ++ +l++++++++T +
  CDO69109.1 1000 fevlgfggatppvpitnrslsalhscanvwgmsaperhrladDWEQKIRRNAYASQLQHYNALRDEYKSACKDYEDMKDENRRRLLKQSDLIACTTT 1096
                  ****************************************998888888888889999999999999999999999999999*************** PP

      AAA_11  205 gagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatv 258 
                  ga+s +   +    +v+++ EA+q +E+ +l  l   +++++ +GDp+QL++t 
  CDO69109.1 1097 GAASLTSLLASVAPKVLLVEEAGQVLEAHILASLVPSVQHLICIGDPQQLRPTL 1150
                  **87544444449****************************************7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.9
      AAA_11  124 qlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesl 188 
                  +l+ e+++ +++l+++l++  +e  +++ ++s+e+ k+++ + ++++ +++++++ke +  ee l
  CDO69109.1 2000 TLSAEVRRYKDNLSDALDSLRKEYMRKRPLESMEDLKAERGWIEDNCGRKVESWKKECDALEEFL 2064
                  55666777777777777777777777888888888888888888889999988888888887766 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   5.2e-11   5.2e-08       1      75 [.     756     844 ..     756     939 .. 0.79
   2 !    7.5   0.0    0.0047       4.7      51     142 ..    1015    1147 ..     990    1150 .. 0.62

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 5.2e-11
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae................atTiHrl 75 
                 q +av  ++ ++v l+ ++pGtGK+++ k+i+++l + +    ++i+l+aft++A + + +++  +g                   +T+ +l
  CDO69109.1 756 QADAVVdTFVREVSLIQGPPGTGKSYTAKEIIRVLFASK---IRPIVLIAFTNHALDHMLTSVLDAGITdklvrlgtrssderisQYTLDKL 844
                 677886699****************************99...589**************998844444456666666666666664455444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0047
      AAA_19   51 tgrAakelrerlaalgaeatTiHrlal...........................................ldfddlltealelle...........e 93  
                  t+r+ + l+   ++ g++a   Hrla                                            l             +            
  CDO69109.1 1015 TNRSLSALHSCANVWGMSAPERHRLADdweqkirrnayasqlqhynalrdeyksackdyedmkdenrrrlL-------------KqsdliactttgA 1098
                  55555555555555555555566665566666666666666666666666666666555444433333332.............2333333333332 PP

      AAA_19   94 aeeekklq..eeellivDEfqdvdelqyrLlkallgekkklllvGDpdQli 142 
                  a+ ++ l   + ++l+v E+ +v  l+ ++l  l+++ ++l+ +GDp+Ql 
  CDO69109.1 1099 ASLTSLLAsvAPKVLLVEEAGQV--LEAHILASLVPSVQHLICIGDPQQLR 1147
                  22333332004559999999887..677899999977789*********85 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.5e-09   2.5e-06       2      76 ..     752     824 ..     751     860 .. 0.80
   2 !    8.9   0.0    0.0012       1.2      85     130 ..    1106    1148 ..    1045    1156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.5e-09
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakl 76 
                 l+++Qa+av  +   +  v++++Gp+GtGK+++ k++ +++ a+  ++++++A t+ a + + +++ ++a  ++kl
  CDO69109.1 752 LDPSQADAVVDTFVRE--VSLIQGPPGTGKSYTAKEIIRVLFASkIRPIVLIAFTNHALDHMLTSV-LDAGITDKL 824
                 7899*****9999888..9******************7777777369***********99988653.344444444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
      AAA_30   85 rlepgtllivDEagmv.dtkqlaallkaaekagakvilvGDerQlas 130 
                  +  + ++l+v Eag v  ++ la+l+ ++++    +i++GD++Ql +
  CDO69109.1 1106 ASVAPKVLLVEEAGQVlEAHILASLVPSVQH----LICIGDPQQLRP 1148
                  223449********99677778888888877....**********86 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   7.5     4e-09     4e-06       2      22 .]       7      28 ..       7      28 .. 0.92
   2 ?   -2.3   0.1       4.3   4.3e+03       2      11 ..      72      82 ..      71      83 .. 0.84
   3 ?   -3.3   0.2         9     9e+03      17      21 ..      88      92 ..      88      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4e-09
   zf-CCCH_4  2 lCpyfa.kGsCrfGdnCrFsHd 22
                lC+++   G+CrfGd+C+FsHd
  CDO69109.1  7 LCRHYRsPGGCRFGDRCKFSHD 28
                7*****666************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.3
   zf-CCCH_4  2 lCpyfa.kGsC 11
                +C +f  +GsC
  CDO69109.1 72 VCQFFWsTGSC 82
                79999899**9 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9
   zf-CCCH_4 17 CrFsH 21
                C+++H
  CDO69109.1 88 CNYRH 92
                ***** PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   6.9   1.6e-08   1.6e-05       5      27 .]       7      29 ..       6      29 .. 0.96
   2 ?    2.1   1.8      0.19   1.9e+02       4      26 ..      71      93 ..      69      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.6e-08
                CBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH  5 lCrffmrtGyCkyGdrCkFaHgq 27
                lCr+++  G C++GdrCkF+H+q
  CDO69109.1  7 LCRHYRSPGGCRFGDRCKFSHDQ 29
                8********************86 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.19
                HCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH  4 elCrffmrtGyCkyGdrCkFaHg 26
                  C+ff  tG+C     C++ H+
  CDO69109.1 71 NVCQFFWSTGSCAKNFECNYRHV 93
                68***********9999999886 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   7.9   3.5e-07   0.00034       1      19 []       8      27 ..       8      27 .. 1.00
   2 ?    3.4   5.6     0.084        84       3      19 .]      76      92 ..      73      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.5e-07
   zf_CCCH_4  1 Ckfflq.GtCkkGdkCrFaH 19
                C+++   G C++Gd+C+F+H
  CDO69109.1  8 CRHYRSpGGCRFGDRCKFSH 27
                ******************** PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.084
   zf_CCCH_4  3 fflqGtCkkGdkCrFaH 19
                f+ +G+C k+  C+++H
  CDO69109.1 76 FWSTGSCAKNFECNYRH 92
                8999************* PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00046      0.46       2      61 ..     767     826 ..     766     858 .. 0.74
   2 !    5.4   0.0    0.0093       9.3     343     360 ..    1367    1384 ..    1315    1386 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00046
     DUF2075   2 avvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkk 61 
                 +v l++G +GtGK++ + +++  l  ++ +  + ++  Nh+l + l + l+   ++k  +
  CDO69109.1 767 EVSLIQGPPGTGKSYTAKEIIRVLFASKIRPIVLIAFTNHALDHMLTSVLDAGITDKLVR 826
                 689*****************9999777777777778889988888877776655455444 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0093
     DUF2075  343 kNayrVLLtRGrkGlyiy 360 
                   N+++V L+R+ +Gly++
  CDO69109.1 1367 SNRINVALSRAKHGLYVM 1384
                  6***************96 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.5e-05     0.035       3     294 ..     754    1145 ..     752    1146 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
                     HHHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH........HHHHCCHHCTT-HHHHH.H CS
  UvrD-helicase    3 peqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee........alkkaeqessdderlrl.a 85  
                     p+q +a++   +++  l+   +G+GK+++  + i+r + +   +++ i+++ FTn A + + + +          +l+     +s+der+ +  
     CDO69109.1  754 PSQADAVVDtfVREVSLIQGPPGTGKSYTA-KEIIRVLFAS--KIRPIVLIAFTNHALDHMLTSVLDagitdklvRLG----TRSSDERISQyT 840 
                     6777777776789999************95.5677777776..5788**************99999977666444222....122333332212 PP

                     HHHCTTSEEEEHHHHHHHHHHHHHGGTT.....................................SHTTTEEECHHHHHHCCHHHHHHHHHSCH CS
  UvrD-helicase   86 lqnlseanisTlHsfcqkilkkeanrig.....................................ldpnfrildeedeedlkqqellkelleks 142 
                     l +l++++  T  ++ + + +++a   +                                     + p f i+d ++        + +e l  +
     CDO69109.1  841 LDKLEKIAATT--QMDRAFKRQYATMKKleeqmsevmtsirlplvswdtietyldihypehadsfRMPPFWISDLSS-----LMWAEEEQLG-E 926 
                     23333333322..1111111111111112233344444444444444443333333334433333333333333333.....1112222222.1 PP

                     SHTTTTHHHHHHHHHHHHHHCCCCCH.................................................................... CS
  UvrD-helicase  143 addslnldkkkleklikelsksrnik.................................................................... 168 
                      ++ ++ ++kk  k++ + s+sr +                                                                     
     CDO69109.1  927 WQEAKKKSSKK--KETVDGSVSRTLYgfwragkdldflqlppaesrqspkgkeiappesayvdlesslltdraaffevlgfggatppvpitnrs 1018
                     11111111111..112223333333356667777788888888888888888888888888888888888888888888888888888888777 PP

                     ....HHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTC..EEHHHHHHHHHHHHHHCHHHHHHHHHH CS
  UvrD-helicase  169 ....keelslskskaeelrelvskakekqlspkelkkafekasdlqkkiaeflkeyqeqkkeena..lDfsdllhallelleeneelaealrer 256 
                             + +  +a e + l +++++k  ++ +  +  ++ + l+++ + + k+y++ k+e++   l +sdl+  +++   +  +l++ +   
     CDO69109.1 1019 lsalHSCANVWGMSAPERHRLADDWEQKIRRNAYASQ-LQHYNALRDEYKSACKDYEDMKDENRRrlLKQSDLIACTTTGAASLTSLLASVAP- 1110
                     7666444444444455555567777776666666666.4577788888888888888888776544488888888888776666666666654. PP

                     SSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase  257 ykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294 
                      k++l+ E+ +     ++il  l+ + ++l+++GDp Q
     CDO69109.1 1111 -KVLLVEEAGQ--VLEAHILASLVPSVQHLICIGDPQQ 1145
                     .4678888754..4566788888888888888888877 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.024      19     135 ..     766     895 ..     762     905 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
      ATPase  19 grvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...............edlrenakslGwdlekleeegklaiidasesaeesaeekdke 102
                 ++v li G pGtGK+  a++ +    +++ +p v++++  +a               + +r   +s +  + ++    kl  i a++++++ a +++ +
  CDO69109.1 766 REVSLIQGPPGTGKSYTAKEIIRVLFASKIRPIVLIAFTNHAldhmltsvldagitdKLVRLGTRSSDERISQYTLD-KLEKIAATTQMDR-AFKRQYA 862
                 6789****************9999888889*************999*999997777666666777777777777776.8888888888776.5559999 PP

      ATPase 103 dleelieelaeaikeikakrvviDsitglayee 135
                  +++l e++ e++ +i+   v  D+i+++  ++
  CDO69109.1 863 TMKKLEEQMSEVMTSIRLPLVSWDTIETYLDIH 895
                 9*************************9985444 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.13       1      51 [.    1326    1383 ..    1326    1384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
    UvrD_C_2    1 hayaltihkaQGsefpaVivfdpd.laaarmgel..........rrrlLYtavTRAreklil 51  
                  h+   t+  +QG+e+++Viv  +    +     +          + + + +a++RA++ l++
  CDO69109.1 1326 HVRLGTVDIFQGQEAKIVIVSLVRnSGQ----CDtgsasigflkSSNRINVALSRAKHGLYV 1383
                  677889999***********55542222....233567999999****************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.2e-05     0.092       2      23 ..     770     791 ..     769     878 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.2e-05
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                 l+ GppGtGK+++ak +++ l 
  CDO69109.1 770 LIQGPPGTGKSYTAKEIIRVLF 791
                 788**************99873 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.5   5.4e+03      44     100 ..     500     564 ..     481     568 .. 0.70
   2 ?   12.0   0.0   0.00023      0.23       2     104 ..     770     897 ..     770     904 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.5
      AAA_18  44 e...aldeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk.......vvLt 100
                     + +++kr+++ kl++ll+++ ++++  ++g + v+ ++  + e++++             vL+
  CDO69109.1 500 LwtiWNSKQKRVQKTKLEELLQKNGGAYR--TSGYDSVFFQLYTNVEFHEQPPTAQrrgvtvtLVLD 564
                 14445567899999999999999999875..777777888888888888776655556655555555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00023
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.....gvnlrdvakenglllevdpe......aldeskrldedkldklldaleenss................ale 72 
                 l+ G+pG+GK+  ake+ + l ++     + +   +++ +++l++v ++          ++  de   ++ ld+le++++                +le
  CDO69109.1 770 LIQGPPGTGKSYTAKEIIRVLfASkirpiVLIAFTNHALDHMLTSVLDAgitdklVRLGTRSSDERISQYTLDKLEKIAAttqmdrafkrqyatmkKLE 868
                 588**************6665344677778888888888888888888889998766667777888888999999999999999999999999999999 PP

      AAA_18  73 egknlvidghlaeleseaakdikkvvLtaspe 104
                 e+ + v+ +++  l+s++ ++    +L+ ++ 
  CDO69109.1 869 EQMSEVMTSIRLPLVSWDTIE---TYLDIHYP 897
                 999999999999999998887...55655555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         6     6e+03      95     153 ..     276     340 ..     248     344 .. 0.61
   2 ?   10.8   0.0   0.00047      0.47      25     109 ..     767     848 ..     755     881 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6
      AAA_16  95 eawrekleeala......avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslq 153
                 + w+++ +  +a      ++  l + +++ ll+ ++r  + ++++ +   +v D ++w+++ s++
  CDO69109.1 276 RTWADTTPNLIAalqnnlDGMRLFRTLSTVLLQYFTRYRDAARNHNDVAPFVQDFADWFESWSRD 340
                 34444333333332244444444555558888888888877777666566777888888876665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00047
      AAA_16  25 elvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavp 109
                 e+ l+ G++G+GKs  ++e+ r l ++  + i+ ++ +++ l      ++ l+++l++ ++  +l +  + ++ e+ ++  ++ l+ ++
  CDO69109.1 767 EVSLIQGPPGTGKSYTAKEIIRVLFASkiRPIVlIAFTNHAL------DHmLTSVLDA-GITDKLVRLGTRSSDERISQYTLDKLEKIA 848
                 5669*****************988888564333344444444......3336666644.666666666555555555555555555333 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.19      25      84 ..     767     825 ..     739     877 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
                 SEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.... CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke 84 
                 +  li+ + GtGK+++a ++i+ l+ + k++ +++++ +++ l+ +l+ + +   +++  
  CDO69109.1 767 EVSLIQGPPGTGKSYTAKEIIRVLFAS-KIRPIVLIAFTNHALDHMLTSVLDAGITDKLV 825
                 457899*******************98.6679999**99999999998875555554433 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00026      0.26      20     114 ..     766     872 ..     758     895 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie............eeeekkklekalgiavpkaeleeilkeksklvfkai 106
                 +e+ +i Gp g GK+   keii  l  ++ + i +ia+ +++++++ +++             + +++++++++++++++k ++ + +++  k  ++ +
  CDO69109.1 766 REVSLIQGPPGTGKSYTAKEIIRVLFASKIRPIVLIAFTNHALDHMLTSVLdagitdklvrlgTRSSDERISQYTLDKLEKIAATTQMDRAFKRQYATM 864
                 68999********************999999999****9999998876655588889999998888888888888888888877666664444444455 PP

    ATPase_2 107 elllekik 114
                 ++l e+++
  CDO69109.1 865 KKLEEQMS 872
                 55444444 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3      0.23   2.2e+02      73      92 ..       8      28 ..       2      40 .. 0.82
   2 ?    7.2   0.0    0.0083       8.2      70      91 ..      70      92 ..      46     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
                -HHH.HHT--SSGGG-SSB-S CS
       Torus 73 ClfF.arGlCakGkkCeylHr 92
                C ++ + G C  G +C++ H+
  CDO69109.1  8 CRHYrSPGGCRFGDRCKFSHD 28
                6555378*************6 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0083
                --B-HHH.HHT--SSGGG-SSB- CS
       Torus 70 syfClfF.arGlCakGkkCeylH 91
                + +C fF + G Cak  +C+y H
  CDO69109.1 70 RNVCQFFwSTGSCAKNFECNYRH 92
                456655439*************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004       0.4       3      36 ..     770     804 ..     769     808 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT- CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdt 36 
                 l++GppGtgKs  a+++ ++l  +++  + l ++t
  CDO69109.1 770 LIQGPPGTGKSYTAKEIIRVLfASKIRPIVLIAFT 804
                 799***************99986666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      797  (0.0444531); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.57
# Mc/sec: 11206.72
//
Query:       CDO69110.1  [L=359]
Description: Glycoside Hydrolase Family 10 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-93  312.1   0.0    4.7e-93  311.8   0.0    1.0  1  Glyco_hydro_10  Glycosyl hydrolase family 10


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.8   0.0   2.6e-97   4.7e-93       5     315 ..      49     353 ..      45     354 .. 0.97

  Alignments for each domain:
  == domain 1  score: 311.8 bits;  conditional E-value: 2.6e-97
                     HHHHTTEEEEEESCHGHHCTTHHHHHHH..HH-SEEEESSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSCCCH CS
  Glyco_hydro_10   5 lakakfkvgtavsaselegeskekellk..kefnsltaeNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkkengsk 97 
                      a++k ++gta+++sel+++ ++ +ll+  + f++lt+   mKw ++ep++g ftf+++d++++ a++ ++ +rGH++vW++ lP+wv+++++++
      CDO69110.1  49 RAADKLYFGTATDNSELNDT-QYFALLDdiRLFGQLTPRKGMKWLETEPERGVFTFAQGDQIAELARRSGKVLRGHNCVWYNSLPTWVTNTTWTA 142
                     567778*************8.******97779**********************************************************99988 PP

                     HHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTSCSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTSTSHHHHHHHHHHHHH CS
  Glyco_hydro_10  98 aeeallkrlenhiktvverykgkiyawDVVNEavddnggslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieeanakrkavvelvkel 192
                      e  l++++++h+ ++v++++g  + wDV+NE ++d+g ++re+ wy++l + yi  A +aAr+adp+akLy+N+Yni  ++ak++++ +lv++l
      CDO69110.1 143 PE--LTEVVQEHCFNIVKHWQG--QIWDVINEPFNDDG-TWRETLWYNTLNTTYIPLALHAARQADPHAKLYINEYNITGTGAKATSMKKLVRDL 232
                     88..*****************9..67***********7.9******************************************************* PP

                     HHTT----EEEE--EEETTSCHHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGGGSTT CS
  Glyco_hydro_10 193 kekgvpidgvGiQsHlsvdspsiseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDkysWl 287
                     k+ gvp+dgvG+Q+H +v+++ +s+i+++l++++alg+evaitELD+r  +   +e+ le+q k+y+++v a+ +v+ k+ gvtvW++tDkysW+
      CDO69110.1 233 KRAGVPLDGVGVQAHEIVGEV-PSDIQRNLEEFVALGVEVAITELDVRFFTLPPTEAGLEQQRKDYETIVGACAAVE-KCVGVTVWDFTDKYSWI 325
                     ********************9.***************************999999**********************.***************** PP

                     HHHSTTEC--SSB-TTS-B-HHHHHHHH CS
  Glyco_hydro_10 288 sglkkkeeapllfdsnyqpkpayeavvd 315
                     +g++++++ ++++d+n+++kpay+++vd
      CDO69110.1 326 PGTFPGSGDACPWDENLKEKPAYYGIVD 353
                     *************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2563.68
//
Query:       CDO69111.1  [L=239]
Description: hypothetical protein BN946_scf185042.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-27   95.7   0.0    2.8e-27   95.4   0.0    1.1  1  adh_short       short chain dehydrogenase
    5.6e-19   68.6   0.1    7.2e-19   68.3   0.1    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.5e-09   37.3   0.1    3.2e-09   36.9   0.1    1.1  1  KR              KR domain
    0.00013   21.9   0.1     0.0004   20.3   0.0    1.7  2  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.23   10.8   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   7.9e-31   2.8e-27       4     188 ..      10     200 ..       7     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 7.9e-31
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S.S--SSGGGCSH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi.tgsgpfselse 98 
                 l+tG s+GIG+a+  +l+++  ++v++  ++ + ++ +  l+++ g +++++++Dv+d+e+++  + k+++ l   +ld ++nNAG  +gs ++  +++
  CDO69111.1  10 LITGTSRGIGLAMTGQLLADPSNTVIATCRNPDSAKSLRALEADaGGRLHIVAMDVADEESIRSSFTKVESILrdRGLDYIYNNAGAfEGSDTAFTFKA 108
                 9*******************9999996666666778899999999**************************999999**********766666667777 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB....-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvp....vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +   r+++ N+ g+ l+++++lp + k+++  +vn+sS  +  +     + +a+Y+ sK a+++lt + + e  +  i  +++ PG v+T+m  
  CDO69111.1 109 AVAMRMFQANVLGPALVAQTFLPLLEKGRRKVVVNMSSALASLSlgtvGPAYASYAISKTALNMLTYKQKTE--KPDIVFVGMDPGWVKTAMGG 200
                 77************************************9885541122577888999********9876665..4459*************975 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1     2e-22   7.2e-19       1     178 [.      13     198 ..      13     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 2e-22
                   TTTTSHHHHHH.HHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiA.kalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpfletsr 92 
                   G  +gIG a+  ++la+   +v++t +n +++k++++l+++ g +  ++++DV+dee++++ + +v++ +   +lD++ nnag  +  +  + +++ 
    CDO69111.1  13 GTSRGIGLAMTgQLLADPSNTVIATCRNPDSAKSLRALEADAGGRlhIVAMDVADEESIRSSFTKVESILrdRGLDYIYNNAGAFEG-SDTAFTFKA 108
                   6789***998726667777889999999999***********988545********************999899************9.78888899* PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGT....SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg..gsivnlssvgae....rvvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla 178
                   +   r+++ n+ + +l+a+ +lpl+++g    +vn+ss  a+     v p y+ y+++K al+ lt     +  +  i      pg++kT +
    CDO69111.1 109 AVAMRMFQANVLGPALVAQTFLPLLEKGrrKVVVNMSSALASlslgTVGPAYASYAISKTALNMLTYKQ--KTEKPDIVFVGMDPGWVKTAM 198
                   **************************998888****9886652222679***************99664..344445777777777777776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1     9e-13   3.2e-09       2     159 ..       8     173 ..       7     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 9e-13
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE------.--- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlr.dkl 96 
                 t litG   g+Gl+++ +l+++  ++++ + R+    +ds++ +++lea  g + ++va+Dv+d++++++ ++++++    + +  +++ Ag+++  ++
  CDO69111.1   8 TWLITGTSRGIGLAMTGQLLADPSNTVIATCRN----PDSAKSLRALEADaGGRLHIVAMDVADEESIRSSFTKVESILrdRGLDYIYNNAGAFEgSDT 102
                 68*******************************....567778999999779**********************998766799**********994455 PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHH..HH--TT..-HHHHHHHHHHHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelled....esldffvlfSSiag..llgsag..qanYaaaNaflDal 159
                   + +a+   +++++ v G   + +++ +     + +++v +SS+ +   lg+ g   a+Ya   + l+ l
  CDO69111.1 103 AFTFKAAVAMRMFQANVLGPALVAQTFLPllekGRRKVVVNMSSALAslSLGTVGpaYASYAISKTALNML 173
                 566777778899*******9999998876665588889999999766233444331145666666666555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.1e-07    0.0004       1      62 [.      13      79 ..      13     119 .. 0.76
   2 ?    0.4   0.0      0.14   5.1e+02     126     150 ..      77     101 ..      74     135 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.1e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE--TT-CCHHHHHHTT-S CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevvegdvtdvedlaealkgad 62
                    G + ++G + + +lla+   +v a  Rnp+++++l+     a  +l++v +dv d+e++++ ++ ++
      CDO69111.1 13 GTSRGIGLAMTGQLLADPSNTVIATCRNPDSAKSLRaleadAGGRLHIVAMDVADEESIRSSFTKVE 79
                    56789*************99***********99776554534479****************998544 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                     HHHHHHHHSSSEEEEEEE-CEE-ST CS
  NAD_binding_10 126 aaeellrasgldwTivrpggLtdep 150
                     + e +lr++gld+     g+++  +
      CDO69111.1  77 KVESILRDRGLDYIYNNAGAFEGSD 101
                     578999*******988888776655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.5e-05      0.23       1      75 [.      10      79 ..      10     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.5e-05
                   EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75
                   LiTG +  iG  ++ +Ll+    +v+ ++r+ +s  ++++++l+ d      ++l+++ +D+ D++s+++ + +v+
     CDO69111.1 10 LITGTSRGIGLAMTGQLLADpSNTVIATCRNPDS--AKSLRALEADA----GGRLHIVAMDVADEESIRSSFTKVE 79
                   89**9999**999999998824566666766666..67899998654....589***********99988877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1563.39
//
Query:       CDO69112.1  [L=236]
Description: hypothetical protein BN946_scf185042.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-31  108.5   0.1    3.5e-31  108.2   0.1    1.0  1  adh_short        short chain dehydrogenase
    7.5e-23   81.3   0.0    9.2e-23   81.0   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.6e-08   34.7   0.1    3.3e-08   33.6   0.1    1.4  1  KR               KR domain
    8.6e-07   29.0   0.1      2e-06   27.8   0.1    1.6  2  NAD_binding_10   NAD(P)H-binding
    0.00023   20.7   0.4    0.00053   19.5   0.4    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.018   14.2   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.11   12.5   0.0       0.21   11.6   0.0    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
       0.18   12.0   0.7        1.5    9.1   0.7    2.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.1   1.6e-34   3.5e-31       4     187 ..       8     196 ..       5     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 1.6e-34
                 EEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S.S--SSGGGCSH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi.tgsgpfselse 98 
                 l+tG s+GIG+++ k+l+++ a++vv + r++ek+ e+++   +++ +++++q+Dv++++++++ ++++++ l  ++ld L+nNA+i + + ++ ++s+
  CDO69112.1   8 LITGTSRGIGLEMTKQLLADRANTVVaTCRNPEKASELHALKDSAQGTLHVVQLDVANEDSIRDSFKTVEQLLgdEGLDYLYNNAAInECNDTAFSFSS 106
                 9*******************999998799999999888887777799**************************7779**********666667778888 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEG...GGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSv...agkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 +   r+++vN+ g+  ++++ lp + k+++  Ivn+s     +g+ + +  + Ys sKaa+++lt + + e     i+ +++ PG v+T+m 
  CDO69112.1 107 AVALRTFQVNVLGPAVIAQTYLPLLEKGRRKVIVNMSTGlasIGLDQGPKCTTYSISKAALNMLTYKQKAER--PDITAVVIDPGWVKTEMG 196
                 889**********************************86222578899999*************98766664..45**************97 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   4.1e-26   9.2e-23       1     180 [.      11     197 ..      11     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 4.1e-26
                   TTTTSHHHHHHHHHHHTT-E.EEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGae.vvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpfletsr 92 
                   G  +gIG ++ k+l +  a+ vv+t +n e+++++++l+++ + +  v+++DV++e+++++ +++v++ +  ++lD+l nna+i +  +  + ++s 
    CDO69112.1  11 GTSRGIGLEMTKQLLADRANtVVATCRNPEKASELHALKDSAQGTlhVVQLDVANEDSIRDSFKTVEQLLgdEGLDYLYNNAAINEC-NDTAFSFSS 106
                   6789*******99888888747777777777*********99977557**********************7779************8.8999999** PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB...STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg..gsivnlssvgaerv...vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                   +   r+++vn+ + + +a+  lpl+++g    ivn+s   a+++    p+ + y+++Kaal+ lt    +e  +  i+  ++ pg++kT++  
    CDO69112.1 107 AVALRTFQVNVLGPAVIAQTYLPLLEKGrrKVIVNMSTGLASIGldqGPKCTTYSISKAALNMLTYKQKAE--RPDITAVVIDPGWVKTEMGG 197
                   **************************998899****9988888744467777************9886555..556**************954 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   1.5e-11   3.3e-08       2      78 ..       6      79 ..       5     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.5e-11
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHH CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikae 78
                t litG   g+Gle++++l+++ a+++v + R+    +++++++++l+++ + + +vv++Dv+++d+++  ++++++ 
  CDO69112.1  6 TWLITGTSRGIGLEMTKQLLADRANTVVATCRN----PEKASELHALKDSaQGTLHVVQLDVANEDSIRDSFKTVEQL 79
                78*******************************....34445688888875779*****************9999865 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1     9e-10     2e-06       1      61 [.      11      76 ..      11      94 .. 0.89
   2 ?   -2.0   0.0       1.3   2.9e+03     131     149 ..     176     194 ..     132     208 .. 0.61

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 9e-10
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCEEEE--TT-CCHHHHHHTT- CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeeglevvegdvtdvedlaealkga 61
                    G + ++G + +k+lla++  +v+a  Rnpek++el      a+  l+vv++dv +++++++ +k +
      CDO69112.1 11 GTSRGIGLEMTKQLLADRANTVVATCRNPEKASELHalkdsAQGTLHVVQLDVANEDSIRDSFKTV 76
                    56789*************889***********98765555566899**************999876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                     HHHSSSEEEEEEE-CEE-S CS
  NAD_binding_10 131 lrasgldwTivrpggLtde 149
                      ++ +++ +++ pg+ + e
      CDO69112.1 176 AERPDITAVVIDPGWVKTE 194
                     3334555566666666655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   2.4e-07   0.00053       1     160 [.       7     178 ..       7     191 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.4e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HH.......HHHHHHHHHT-SEEEE--S.---HHH.... CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrs.......alerlfkeeqpdavihlAa.vggvaa.... 79 
                 +l+tG +  iG  ++k+ll+   + ++ + ++ ++++++++ l        ++v+ld+ +++        +e+l+ +e+ d+ ++ Aa   + ++    
  CDO69112.1   7 WLITGTSRGIGLEMTKQLLADRANTVVATCRNPEKASELHA-LkdsaqgtlHVVQLDVANEDsirdsfkTVEQLLGDEGLDYLYNNAAiNECNDTafsf 104
                 59******************997755555553333333333.34689***************677667677778888999********54444432222 PP

                 HHHSHHHHHHHHTHHHHHHHHHHH...HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  80 ssedpadfieknlqgtlnlleaar...kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy 160
                 ss  + ++++ n+ g   +++      ++g ++++   S+ +   + +  +         +  + Y+++K+a   l+ + +a+ 
  CDO69112.1 105 SSAVALRTFQVNVLGPAVIAQTYLpllEKGRRKVIVNMSTGLASIGLD--QG--------PKCTTYSISKAALNMLTYKQKAER 178
                 455667788888888888888776555556665555555454444444..22........234677777777777776666655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.9e-06     0.018       2      98 ..       8     105 ..       7     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.9e-06
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE......E--TT-H.HHHHHHTT..T-SEEEE------HHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkvei..vpvigdvrdk.erlekaleelkvdvvfhaAAlKhVPl 92 
                      l+tG +  iG e+++q+l+ ++++++   r+  k  e++  +++ +   +l+v    v+   ++rd+ +++e++l + + d++++ AA+ +   
       CDO69112.1   8 LITGTSRGIGLEMTKQLLADRANTVVATCRNPEKASELHALKDSAQG--TLHVVQldVANEDSIRDSfKTVEQLLGDEGLDYLYNNAAINECND 99 
                      8**************************99999999999886533322..332222003444567776466788888889999999999887655 PP

                      HHHSHH CS
  Polysacc_synt_2  93 veenpl 98 
                        +   
       CDO69112.1 100 TAFSFS 105
                      544443 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.4e-05      0.21       2      77 ..      16     103 ..      15     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.4e-05
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHT.....TESEEEET.....TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHH CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakkl.....Gadeviny.....kea.dlverikeltggegvdvvfecvGsgatleaalk 77 
                 +Gl   + + a  a +v+a+++++ek+  +  l     G  +v+       ++  d  + +++l g+eg+d+ ++ ++++++ ++a++
  CDO69112.1  16 IGLEMTKQLLADRAnTVVATCRNPEKASELHALkdsaqGTLHVVQLdvaneDSIrDSFKTVEQLLGDEGLDYLYNNAAINECNDTAFS 103
                 6665555556666779999********99999999888888888888888766668999999999************99998888776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.7   0.00065       1.5       8      68 ..      15      74 ..       7     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00065
                     HHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..TTTCEEEEE--TTTHHHHHHHHHT CS
  Sacchrp_dh_NADP  8 svGqavaellarhfdvdaeitvadrskeklealaaka..lgvrfeaialdaenyeavLaallk 68
                     ++G  +++ l++      +++  +r+ ek+ +l a +  ++ +++ ++ld++n++++ ++  k
       CDO69112.1 15 GIGLEMTKQLLADRAN--TVVATCRNPEKASELHALKdsAQGTLHVVQLDVANEDSIRDS-FK 74
                     5677777777777766..8**********98887766889999************95443.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1656.74
//
Query:       CDO69113.1  [L=487]
Description: hypothetical protein BN946_scf185042.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   18.8   0.1     0.0037   17.2   0.1    1.8  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.1e-07    0.0037      56     202 ..      62     286 ..       3     300 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-07
                 B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHC..................................CHHCH.-STTTB- CS
         APH  56 evlagd.tddeeigllfalieyvpgrsllr...klsaaqlpellealgefla..................................alhqvdpaalpla 116
                  v+a+    d+ +g+++ ++ey pg  ll+   + + +++ ++l  +g++                                     l          +
  CDO69113.1  62 SVFAWStSHDNPAGTPYIILEYSPGVRLLDrwpHIQRDDTAAALKSIGSLETallleqfsqngsiysagdvpeelrrrplyqgdddSL----------E 150
                 4444442455566777777777777777776666666666666666666655554554444444444444444444333333333311..........1 PP

                 ..............................SHHCHTCCHH.........................HHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH- CS
         APH 117 ..............................dflaqdlell.........................rqlesatarllaselldlleeleeqvlaalaall 160
                                               d                                  ++l+s++ r+ +s+ +  l +     l ++ + +
  CDO69113.1 151 dfarqlapqykigptvdrewwrgpygsidaD--------RgpwpdmqsmirsaanfqlraldtgaIDLASSKVRSTPSDIPL-LRR----MLHMCIRIA 236
                 2222222223333333333333333332220........0222222222222222222222222255555544555555555.233....444444444 PP

                 -S.......SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEECC CS
         APH 161 pg.......elptvllHgDlhpgNllvd.pddgrvtGviDfedaglgppl 202
                 p          +++l H Dl++ Nl+v  +++  ++  iD++ a+++p  
  CDO69113.1 237 PFvvpsdpaLTAPTLNHPDLSLTNLIVPpDGPATIRHSIDWQGATVSPFC 286
                 4466669999******************8555555559********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3233.13
//
Query:       CDO69114.1  [L=532]
Description: hypothetical protein BN946_scf185042.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-80  270.2   0.4    1.9e-80  269.9   0.4    1.1  1  NMD3           NMD3 family
  ------ inclusion threshold ------
      0.038   13.8   1.9       0.18   11.7   0.7    2.6  3  NinF           NinF protein
      0.048   13.9   2.4        6.6    7.1   0.1    2.8  3  Rpr2           RNAse P Rpr2/Rpp21/SNM1 subunit domain
      0.066   13.2   6.0       0.21   11.6   2.9    2.7  2  DZR            Double zinc ribbon
        1.3    9.0   9.0        1.4    8.9   0.5    3.3  3  DUF35_N        Rubredoxin-like zinc ribbon domain (DUF35_N)


Domain annotation for each model (and alignments):
>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.9   0.4   5.2e-84   1.9e-80       1     243 []      14     242 ..      14     242 .. 0.98

  Alignments for each domain:
  == domain 1  score: 269.9 bits;  conditional E-value: 5.2e-84
        NMD3   1 CcrCGkeieelinglCedCllkevditegiek.ievevCkeCgryl.pkgkWvkaeleseellaeclkklvekgLkvseeveevkvelvdaefiwteph 97 
                 C +CG++i +   +lC++Cl+++vditegi+k ++v +C++C+r+l p ++W+ a+ es+ella+clkkl  kgL+        kv+l da+fiwteph
  CDO69114.1  14 CADCGTPIVPNSANLCVACLRNSVDITEGIPKqASVSYCRNCERFLsPPSTWTIAQPESKELLAICLKKL--KGLN--------KVRLTDAHFIWTEPH 102
                 9*******977677*********************************666********************..****........*************** PP

        NMD3  98 skrikvkvtvqgevrgenetilqqevevevkvkrqqCprCsriagg.yyeaivQvRqkrelteeehkrtfelleqlilkhdahafiskikevkeGlDfy 195
                 skr+++ +t+q+ev  +++til+q +e+e+ v++ qCp+C++ a++ +++a+vQvRqk     + hkrtf++leqlilkh a+++++++kev++GlDf+
  CDO69114.1 103 SKRLRISLTIQKEV--LTNTILEQVFEIEYLVQYGQCPDCAKLAAKnTWKALVQVRQK-----VPHKRTFLFLEQLILKHGAQKDTISVKEVRDGLDFF 194
                 **************..8899**************************************.....************************************ PP

        NMD3 196 fgsksaArklveflksevggkvkeseklvsedkksgkevyrltysvrl 243
                 ++s+s+A k+vefl+ +v+++ k se+l s+d++++++++++tysv++
  CDO69114.1 195 YSSRSHAVKMVEFLNGVVPVRSKASEQLLSTDTHTNTANFKYTYSVEI 242
                 **********************************************98 PP

>> NinF  NinF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7     5e-05      0.18      14      41 ..       8      35 ..       6      40 .. 0.90
   2 ?   -3.7   0.0       3.3   1.2e+04      20      29 ..      52      61 ..      48      64 .. 0.74
   3 ?   -1.0   0.0      0.48   1.7e+03      20      53 ..     270     304 ..     266     308 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
        NinF 14 sveRaLCanCskkLevdevhvCeeCvae 41
                +v R LCa+C+  + ++    C +C  +
  CDO69114.1  8 AVHRVLCADCGTPIVPNSANLCVACLRN 35
                589**********************865 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
        NinF 20 CanCskkLev 29
                C nC + L +
  CDO69114.1 52 CRNCERFLSP 61
                8999887765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.48
        NinF  20 CanCskkLevde...vhvCeeCvaeliyyrDPnssma 53 
                 C   ++ L+ ++     vCe      +y+r P +s+a
  CDO69114.1 270 CVRVGNSLHLLDpatLQVCEL--TAPVYWRSPFESLA 304
                 666666666554111567764..34577888877765 PP

>> Rpr2  RNAse P Rpr2/Rpp21/SNM1 subunit domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0045        16      40      59 ..       6      25 ..       2      37 .. 0.87
   2 ?    7.1   0.1    0.0018       6.6      38      66 ..      42      70 ..      25      84 .. 0.82
   3 ?   -3.0   0.0       2.6   9.3e+03      45      65 ..     134     155 ..     117     164 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0045
                SSTCCCTB-TTT--B--CTT CS
        Rpr2 40 ppsvkrtvCkkCgsvlipgv 59
                 p+v+r +C  Cg+ ++p++
  CDO69114.1  6 APAVHRVLCADCGTPIVPNS 25
                58999*************96 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0018
                --SSTCCCTB-TTT--B--CTTTEEEEEE CS
        Rpr2 38 rlppsvkrtvCkkCgsvlipgvtcsvrve 66
                 +p++ + ++C++C+ +l p +t ++ + 
  CDO69114.1 42 GIPKQASVSYCRNCERFLSPPSTWTIAQP 70
                578888999***********999998774 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.6
                 CTB-TTT--B--CT.TTEEEEE CS
        Rpr2  45 rtvCkkCgsvlipg.vtcsvrv 65 
                    C  C ++  ++ +++ v+v
  CDO69114.1 134 YGQCPDCAKLAAKNtWKALVQV 155
                 4557777776665523444444 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.9   5.9e-05      0.21       1      39 [.      14      60 ..       4      66 .. 0.68
   2 ?    3.7   0.5     0.018        64      13      37 ..      50     143 ..      40     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
         DZR  1 CpqCgee.lppdarfCseCgtklkavaa.......edrCpsCgekvd 39
                C+ Cg++ +p++a+ C +C  +    ++          C +C++ ++
  CDO69114.1 14 CADCGTPiVPNSANLCVACLRNSVDITEgipkqasVSYCRNCERFLS 60
                77888885566777888887773333334555555888888877655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.018
         DZR  13 rfCseCgtklkavaa.....................................................................edrCpsCgek 37 
                  +C +C   l+++++                                                                       +Cp C + 
  CDO69114.1  50 SYCRNCERFLSPPSTwtiaqpeskellaiclkklkglnkvrltdahfiwtephskrlrisltiqkevltntileqvfeieylvqYGQCPDCAKL 143
                 4888888888877667777777777766666666666666666666666666666666666666666666666666666666666666666665 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5   0.00039       1.4      14      34 ..      14      35 ..      13      38 .. 0.89
   2 ?    2.9   0.2     0.029   1.1e+02      12      24 ..      50      62 ..      48      65 .. 0.83
   3 ?    1.1   0.2       0.1   3.7e+02      12      18 ..     135     141 ..     134     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00039
     DUF35_N 14 CpdCGtvqfPPr.avCphCgsd 34
                C+dCGt ++P   + C  C++ 
  CDO69114.1 14 CADCGTPIVPNSaNLCVACLRN 35
                *******************765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
     DUF35_N 12 qrCpdCGtvqfPP 24
                ++C++C ++  PP
  CDO69114.1 50 SYCRNCERFLSPP 62
                79*****998777 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.1
     DUF35_N  12 qrCpdCG 18 
                 ++CpdC 
  CDO69114.1 135 GQCPDCA 141
                 79****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3661.02
//
Query:       CDO69115.1  [L=414]
Description: hypothetical protein BN946_scf185042.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-64  218.1   0.0    3.5e-64  217.3   0.0    1.3  1  CLN3      CLN3 protein


Domain annotation for each model (and alignments):
>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.3   0.0   1.9e-68   3.5e-64      97     395 ..      43     383 ..      40     385 .. 0.84

  Alignments for each domain:
  == domain 1  score: 217.3 bits;  conditional E-value: 1.9e-68
        CLN3  97 GlGEltfLqlthyy.....kksslaawssGTGaaGlvGallyalltsllglsvkatllvslvlPlllllsyflllekkkskkeakaeeee.eeyeklee 189
                 GlGEltfLql+++y     + +s+++++sGTG+aGl+Ga+l++ l+   gl+v++++ + +vlP++++l+yf +l++++ ++ +  +ee  +  ++   
  CDO69115.1  43 GLGELTFLQLSTRYhppsvAGHSVGYFASGTGGAGLAGAFLWWELR---GLGVRTGVGLAAVLPFVIPLTYFSVLPRPDRFAGRAFAEEGrDGFDDA-- 136
                 9*************998888999***********************...8****************************9999887755442333322.. PP

        CLN3 190 eeeeee....eeseeeelleseaasaaeeeeeeesselkkslkeklklvksLllkymlPLllVYlaeYliNqgv..aptllfplee............. 269
                    + +           + e+e+    +e e++ ++ ++ s+++k++l+k++l+kymlPL++VYl+  +  + v  ++t++ ++ +             
  CDO69115.1 137 -PMTGSyiplP------RGEEEEVVPVTEPEATVKAPIALSMEDKWRLAKPMLTKYMLPLFCVYLVGRFTSRCVcrSDTVVVRVYHqpgglsnssipxx 228
                 .2222222221......222222223333334444678899*****************************999944578888863347888899***** PP

        CLN3 270 ........kpfkslrdqYrvyqvlYqlgvfisRssvsllri.....rklyllsllQvlnlvllllea.........lyelflpsiylvfllilyeGllG 346
                           ++s rd+Y+++q++Yq +vf+sRss+s l +     r l l++++Q ++l +l++e+             +  s+ +vf+li++eG++G
  CDO69115.1 229 xxxxxfmrLFIHSIRDYYPLWQLIYQSTVFLSRSSIS-LGLpplpgRLLSLPAVVQGVILGTLAYESavgifgdddS--REGWSFAFVFVLIAIEGVCG 324
                 *9999875559*************************9.55556798*********************7776665431..3457999************* PP

        CLN3 347 GaaYvntfaeiseevek..........eerefslgavsvsDslGillagllalplenal 395
                 G+aYvn+f++i++e+++          +eref++g+++++Ds+Gil+a+l+a+p+e +l
  CDO69115.1 325 GLAYVNVFYRINQEKHDgsgadaerakQEREFKIGSIGLADSTGILMASLVAVPTEIEL 383
                 **************9999************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2727.09
//
Query:       CDO69116.1  [L=547]
Description: hypothetical protein BN946_scf185042.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3875.63
//
Query:       CDO69117.1  [L=255]
Description: hypothetical protein BN946_scf185042.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.4   2.6       0.22   11.2   0.1    2.7  3  DUF3755   Protein of unknown function (DUF3755)
      0.036   14.2   0.1       0.72   10.0   0.0    2.4  2  DUF4363   Domain of unknown function (DUF4363)
       0.04   14.1   0.0       0.08   13.2   0.0    1.5  1  DUF722    Protein of unknown function (DUF722)
       0.15   12.3   0.1        2.3    8.5   0.0    2.3  2  PI_PP_I   Phosphoinositide phosphatase insertion domain


Domain annotation for each model (and alignments):
>> DUF3755  Protein of unknown function (DUF3755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.5   6.6e+03      18      28 ..      88      98 ..      86      99 .. 0.69
   2 ?   11.2   0.1     5e-05      0.22      17      34 .]     188     205 ..     188     205 .. 0.98
   3 ?    2.5   0.0     0.025   1.1e+02      16      31 ..     237     252 ..     236     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
     DUF3755 18 ImaIlndMsdm 28
                I+ I  d++ m
  CDO69117.1 88 IRQIKDDLNAM 98
                77788887755 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5e-05
     DUF3755  17 NImaIlndMsdmpGiMsQ 34 
                 N+m +l++++d+ G+M+Q
  CDO69117.1 188 NLMVLLQHIKDVAGLMRQ 205
                 9****************9 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.025
     DUF3755  16 dNImaIlndMsdmpGi 31 
                 dNI + ln++s + G+
  CDO69117.1 237 DNIAKTLNEISSLEGR 252
                 9**********99986 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.074   3.3e+02      57      76 ..      85     104 ..      62     115 .. 0.67
   2 ?   10.0   0.0   0.00016      0.72      27      98 ..     126     198 ..     116     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.074
     DUF4363  57 hdeldeietslaklkayiet 76 
                 +de+++i+ +l ++++y+ t
  CDO69117.1  85 SDEIRQIKDDLNAMSTYLLT 104
                 35555555555555555544 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00016
     DUF4363  27 nedweeakekleelekeWekkkkk.lsifiehdeldeietslaklkayietedkeealaelaelkfllehike 98 
                 ++ w+e   +++++ +  +k  +k + ++ +h  + ei+t +a+ +a ++  + e +  e+ +l  ll+hik+
  CDO69117.1 126 SGRWDELRGNFDDFLDVSRKSASKaFVLLKQHAVIVEINTLVARKSADLDAFNLEALKKEVLNLMVLLQHIKD 198
                 6788888888888888777765550555568****************************************98 PP

>> DUF722  Protein of unknown function (DUF722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05      0.08      47     125 ..      74     156 ..      50     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
      DUF722  47 kesrvldkellikEeDkeliklkdqkellsellevlteeekeiiklrykgrrglsWyrvaiel........eisekkakkiyisfkk 125
                  e  ++d   l      e+ ++kd+++ +s++l +l +  k  +++ ++g r  +W+    el        ++s k a k ++ +k+
  CDO69117.1  74 DEIATIDASSL----SDEIRQIKDDLNAMSTYLLTLDKRSKPTLRVFFRGLRAQTWSGRWDELrgnfddflDVSRKSASKAFVLLKQ 156
                 45555666666....458999************************************999999999999999999999999888887 PP

>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00051       2.3      41      83 ..      74     117 ..      52     126 .. 0.85
   2 ?    1.4   0.1     0.082   3.7e+02      19      57 ..     172     210 ..     158     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00051
                 HHHH.HH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHHHHHHHT CS
     PI_PP_I  41 eeik.ktslsLeedLnkiannktplPsWfnelskaqqellrvla 83 
                 +ei    ++sL+ ++++i+ + + + +++ +l+k+ + +lrv+ 
  CDO69117.1  74 DEIAtIDASSLSDEIRQIKDDLNAMSTYLLTLDKRSKPTLRVFF 117
                 5666345779********************************97 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.082
                 --TT--SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHH CS
     PI_PP_I  19 leskeaslkklkqdlnqfllkWeeikktslsLeedLnki 57 
                 ++ ++ +l+ lk+++ ++++  ++ik+ +  + ++ ++i
  CDO69117.1 172 ADLDAFNLEALKKEVLNLMVLLQHIKDVAGLMRQQVSRI 210
                 556667778888888888888888887776666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1944.20
//
Query:       CDO69118.1  [L=246]
Description: hypothetical protein BN946_scf185042.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.3   0.3      0.068   12.9   0.3    1.7  1  Bim_N     Bim protein N-terminus


Domain annotation for each model (and alignments):
>> Bim_N  Bim protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   3.8e-06     0.068      12      27 ..      63      78 ..      56      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-06
       Bim_N 12 EGGQLQpteRpaqprq 27
                EGGQL  ++Rp+ pr+
  CDO69118.1 63 EGGQLDDAQRPPTPRP 78
                *************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1714.38
//
Query:       CDO69119.1  [L=599]
Description: hypothetical protein BN946_scf185042.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-27   93.5   0.0    1.4e-26   92.9   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    4.1e-13   49.6   0.0    9.4e-13   48.4   0.0    1.6  1  rve              Integrase core domain
    1.2e-08   34.7   0.0    2.2e-08   33.8   0.0    1.5  1  gag_pre-integrs  GAG-pre-integrase domain
    3.6e-07   29.7   0.6      1e-06   28.2   0.6    1.9  1  DUF4219          Domain of unknown function (DUF4219)
    1.7e-05   24.5   0.1    3.5e-05   23.5   0.1    1.4  1  Retrotran_gag_3  gag-polypeptide of LTR copia-type
     0.0092   16.0   3.0      0.024   14.7   3.0    1.8  1  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
      0.011   15.4   1.2      0.025   14.3   1.2    1.6  1  zf-CCHC_4        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   5.3e-30   1.4e-26       1     137 [.      58     203 ..      58     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 5.3e-30
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      wkkkdakal +I+l +++++l + +++++ake+Wd+L+++++ +++   +t r+klf+ ++ e++++++h++ ++++ + L alg+ ++d+d  
       CDO69119.1  58 WKKKDAKALRAIRLRLAKDVLVYAQDATSAKEAWDTLADTFQPTGPIGIVTARRKLFRAQCPENGDIKEHLRLMRTYQSGLHALGQVLPDSDFS 151
                      9********************************************************************************************* PP

  Retrotran_gag_2  95 vllLasLPesyetfvtaies.........seedltleevieklleeeerrke 137
                       ++L+sLP+s++ f+ ai+          +  +l+  ++i+++l+e++r+k+
       CDO69119.1 152 MTILTSLPDSWDAFIRAIDPtdllppatgQTPKLSSAKLIARILQEDRRLKQ 203
                      ******************9888887666666778888999999999999886 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   3.7e-16   9.4e-13      16     109 ..     506     599 .]     498     599 .] 0.96

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 3.7e-16
         rve  16 ripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvE 109
                 ri++ +g++yl+v +d+ +r  + ++ +d++++ + l+  +++++ + g+++++++ Dng+e+++ a++ +l+++gir+++t p++  +nG++E
  CDO69119.1 506 RIKGINGELYLTVYTDVKTRHRVRFFSRDKAQQLHFLQSYRAFLKTQVGRRMKALRVDNGKEFVNDAIKSYLRSHGIRLELTTPYSLAQNGIAE 599
                 67777889************************************************************************************99 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   8.6e-12   2.2e-08       2      67 .]     431     499 ..     430     499 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 8.6e-12
  gag_pre-integrs   2 LYlldlssnanssvslsk.nkssinlWHrRLGHpsfsrlkkLfkkgllpglkisk....sevCeaCqlgKq 67 
                      LY l+    + + +++++ +  + + WH+  +H+++++l+++++kgl+ g+k ++    s++C++C+++K+
       CDO69119.1 431 LYRLSV--ESGPDCVFAAiAPRTWDEWHHIYAHLNHDYLRTMARKGLVIGMKVDEsipaSPQCPSCIKAKH 499
                      667766..356777777756999****************************9866677799*********8 PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.6     4e-10     1e-06       1      27 []      16      42 ..      16      42 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4e-10
     DUF4219  1 LdgtNYatWklrMklyLiaqdLWevVe 27
                L+g+NY tW ++M   L ++dLW++V+
  CDO69119.1 16 LNGDNYVTWRVQMTDILSELDLWDYVS 42
                8************************95 PP

>> Retrotran_gag_3  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   1.4e-08   3.5e-05       6      43 ..       7      44 ..       2      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.4e-08
  Retrotran_gag_3  6 pGlvlvsvqLdgdNYssWkramrlaLsvKnklGFvdGs 43
                     +G+++  + L+gdNY++W+  m+  Ls  +++++v+G 
       CDO69119.1  7 SGSNFRIEPLNGDNYVTWRVQMTDILSELDLWDYVSGN 44
                     567777789****************************7 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   3.0   9.3e-06     0.024       2      16 ..     224     238 ..     223     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.3e-06
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                 +C+nCG+ GH    C
  CDO69119.1 224 TCFNCGRRGHKQDKC 238
                 7*********99999 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2   9.6e-06     0.025      33      48 ..     223     239 ..     221     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.6e-06
   zf-CCHC_4  33 f.CyiCgvlGHsdkrCd 48 
                 f C++Cg+ GH+ ++C+
  CDO69119.1 223 FtCFNCGRRGHKQDKCR 239
                 44**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4275.59
//
Query:       CDO69120.1  [L=460]
Description: hypothetical protein BN946_scf185042.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3300.78
//
Query:       CDO69121.1  [L=489]
Description: hypothetical protein BN946_scf185042.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-14   52.7   0.7    9.5e-06   26.1   0.0    2.3  2  ING       Inhibitor of growth proteins N-terminal histone-bin
     0.0025   17.3   1.8     0.0052   16.3   1.8    1.5  1  PHD_2     PHD-finger
  ------ inclusion threshold ------
      0.014   15.3   7.8      0.027   14.3   0.8    2.4  2  PHD       PHD-finger


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.6e-09   9.5e-06       6      56 ..      80     133 ..      77     145 .. 0.82
   2 !   24.8   0.1   4.1e-09   2.5e-05      47      99 ..     194     247 ..     181     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.6e-09
                 HTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TS..S-HHHHH CS
         ING   6 ldsvenLPlelqrnltelreiDakvqellkeidskiekfl...kngslqkneke 56 
                  + +e+LPl l+r +t+++e+D++ q++l+ i   + k++   k+ + + ++k+
  CDO69121.1  80 YELLEQLPLSLHRAFTLIHELDQQAQDNLAHIAPAVLKYIslrKELAASTQPKD 133
                 6889************************************98744444455554 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 4.1e-09
                 S..S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTX CS
         ING  47 ngslqknekeeels.riqeelkeaqelldeKiqlaqqaldlvdkhlrrLdqdle 99 
                 +++ q+ ++ +el  r+ ++ +e+ +   eK+ laq+a+dlvd+++r Ld++++
  CDO69121.1 194 ARAVQNSSSTRELLvRVAQSSEEVTRACAEKVYLAQHAYDLVDRYIRGLDRAIK 247
                 445666666666667***********************************9987 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.8   8.8e-07    0.0052      11      35 ..     452     475 ..     449     476 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.8e-07
       PHD_2  11 svaVHasCYGvskesdgeeWlCrrC 35 
                 ++++H  C G++k+++g  W+Cr C
  CDO69121.1 452 CTQFHIGCVGLTKIPKG-NWYCREC 475
                 689**************.******* PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.1     0.006        36       1      22 [.     410     430 ..     410     435 .. 0.81
   2 ?   14.3   0.8   4.6e-06     0.027      23      50 ..     453     476 ..     448     478 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.006
                 SBTTTTSTTSTTSCEEEETT..TS CS
         PHD   1 rCavCkkksdeeeelvqCdg..Ck 22 
                 +C +C++     ++++ Cd+  C 
  CDO69121.1 410 YC-FCNQ--VSFGDMIACDNptCA 430
                 69.****..789******953375 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.6e-06
                 CEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD  23 rwfHqkClkppleseekpegewlCekCk 50 
                 + fH  C++++    ++p+g+w+C++C 
  CDO69121.1 453 TQFHIGCVGLT----KIPKGNWYCRECV 476
                 569********....569999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3564.31
//
Query:       CDO69122.1  [L=403]
Description: hypothetical protein BN946_scf185042.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-34  119.2   0.0      4e-34  117.7   0.0    1.8  1  Nuf2             Nuf2 family
    9.6e-29   99.8  17.9    9.6e-29   99.8  17.9    4.1  5  DHR10            Designed helical repeat protein 10 domain
     0.0019   15.8  35.0     0.0026   15.4  35.0    1.0  1  DUF3584          Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
      0.097   11.5  36.3      0.046   12.6   9.5    3.3  3  Spc7             Spc7 kinetochore protein
       0.11   13.0  40.8       0.13   12.8   8.6    4.2  3  APG6_N           Apg6 coiled-coil region
        0.3   11.3   7.6        6.4    7.1   0.0    4.2  4  HALZ             Homeobox associated leucine zipper
       0.31   10.3  35.1       0.64    9.3  10.0    3.4  3  DUF3450          Protein of unknown function (DUF3450)
       0.42   10.6   6.5        3.6    7.6   0.2    3.2  3  Lipoprotein_6    Lipoprotein
       0.49   10.2   4.4        1.4    8.8   0.7    3.2  2  DASH_Duo1        DASH complex subunit Duo1
       0.62    9.6  38.5       0.53    9.8  16.4    3.1  3  Filament         Intermediate filament protein
          2    8.4  25.1       0.11   12.6   1.9    3.8  3  DUF1664          Protein of unknown function (DUF1664)
        2.4    8.9  24.0        3.5    8.3   2.2    3.9  4  YabA             Initiation control protein YabA
        5.4    7.6  10.6        2.8    8.6   0.6    2.9  3  Scaffolding_pro  Phi29 scaffolding protein


Domain annotation for each model (and alignments):
>> Nuf2  Nuf2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   2.9e-37     4e-34       3     136 ..       6     139 ..       4     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 2.9e-37
        Nuf2   3 sfplldvreIvaclqelgfevteedlakPtpefvqklyeqfleilmgiseedieqaaraaleeleepelyedslpllillrslkrflkacgvedFslsD 101
                  fp+l+ +e+v  +  +g +v+ e++a+Pt++fv ++y  ++e+l+gi+ e++++++ +al+++e+p++y+++l    ll +++rf +a++++dFs +D
  CDO69122.1   6 WFPSLPISEVVDAFTGWGYSVSPEQVARPTSDFVLGVYCACVEQLTGITLETLQEPMEQALATTENPDMYSQALAHNLLLFHIQRFASAAKIQDFSAKD 104
                 69************************************************************************************************* PP

        Nuf2 102 llkPdpkRtrriLSaliNFirFreerseifeelle 136
                 ++ Pdp+Rtr i+Sa+iNFi+F e+    ++ l +
  CDO69122.1 105 IYFPDPDRTRSIFSAFINFIKFSEQSEVFINRLRN 139
                 ************************99887777655 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.6     1e+04      38      56 ..      46      64 ..      45      80 .. 0.63
   2 ?   -2.6   4.8       3.9   5.4e+03      55      85 ..     140     167 ..     122     197 .. 0.48
   3 ?    0.5   3.4      0.44   6.1e+02      48      94 ..     203     242 ..     181     249 .. 0.61
   4 !   99.8  17.9     7e-32   9.6e-29       3     117 .]     252     370 ..     250     370 .. 0.94
   5 ?   -0.5   1.1      0.92   1.3e+03      52      78 ..     372     398 ..     369     401 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.6
       DHR10 38 ciklleeieaelakleeak 56
                c+++l  i  e+ ++  ++
  CDO69122.1 46 CVEQLTGITLETLQEPMEQ 64
                6666666666555544444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
       DHR10  55 akkklkelrdaleekeielrelerkeerlqr 85 
                 ++  + + r+a+++ ++   ele++ +  + 
  CDO69122.1 140 QSTAVMKERQAVMQETA---ELEQRMTDFKV 167
                 44444444444433322...33333333333 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.44
       DHR10  48 elakleeakkklkelrdaleekeielrelerkeerlqrqlenaeekl 94 
                 e+++       lk+ + ale+ + e + ++ ++ r + ++ +  e++
  CDO69122.1 203 EVES-------LKQEKSALEKVTSEMATVSENINRTRSRIVQSPERI 242
                 4444.......444445555555555555555555555555444444 PP

  == domain 4  score: 99.8 bits;  conditional E-value: 7e-32
       DHR10   3 slaeekeelaelErkarelqakidalqvvekd....lrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerl 97 
                 ++aeek+++a++E+k+r+lq+ki+al ++ek     +rs+++++  ie+e+++l+ a+k+l +l+d+l+ k+ e++el +++er+++q +na+ekler+
  CDO69122.1 252 TAAEEKRTIAANEAKTRDLQTKIAALLNIEKAshslIRSAFDVMPVIEKEMRALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQFSNAQEKLERA 350
                 799****************************944445666789******************************************************** PP

       DHR10  98 reqaeekreaakarleelre 117
                 +++ae+kr a+++++e+l++
  CDO69122.1 351 QRHAEDKRIASQQTIERLQR 370
                 ******************95 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.92
       DHR10  52 leeakkklkelrdaleekeielreler 78 
                 +ee + +  ++  ++ee+++e+ e+er
  CDO69122.1 372 YEEMSVERRDNDRQVEELRAEADEIER 398
                 444445555555555555555555555 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  35.0   1.9e-06    0.0026     282     532 ..     145     399 ..     124     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-06
     DUF3584 282 qeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqek 380
                  +e+q+  +e  ++l++   ++k +++e + + +a++++ aa  +++ a ++++  +++ ++e+lk++ ++l+++ se++ ++e++++  +++ +  e+
  CDO69122.1 145 MKERQAVMQET-AELEQRMTDFKVKRAEDEPKCEALRQENAALMEQVIAYKDRQMGFLQ-EVESLKQEKSALEKVTSEMATVSENINRTRSRIVQSPER 241
                 22222222222.23333344566677777777777777777778888888888888876.69************************************* PP

     DUF3584 381 ydrrkqkikeeleeeleklkerleaireekdrl..kaaieealea.lesqlr.....kqleaqkeelneeekelesrlselklrldsatateEeleqie 471
                  +r+++ + +  +ee +++ ++++++r+ + +   + +ie+a +  ++s++      +++  +  ++++e  +l+  l+++k  +++  +  E + ++ 
  CDO69122.1 242 IKRNISTMGHTAAEEKRTIAANEAKTRDLQTKIaaLLNIEKASHSlIRSAFDvmpviEKEMRALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQ- 339
                 ************99999999999999998877755445555555415666652222244455555666666677777777777777777777766543. PP

     DUF3584 472 eadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleeleeq 532
                  + +a ek +++++ ae+++ a q+  e+l+ + +e +  +++  r++e+lr++++e+e+ 
  CDO69122.1 340 -FSNAQEKLERAQRHAEDKRIASQQTIERLQREYEEMSVERRDNDRQVEELRAEADEIERK 399
                 .333444444555667788889999999******************************985 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   9.0     0.037        51     201     281 ..     134     217 ..     125     218 .. 0.72
   2 ?    9.1   9.8   0.00038      0.53     147     255 ..     175     279 ..     169     291 .. 0.90
   3 ?   12.6   9.5   3.3e-05     0.046     206     279 ..     303     376 ..     295     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.037
        Spc7 201 Leelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwse...sevsrlkeevkaleel 281
                 ++ lr++ +++++e ++ ++e+ael++++++ + k +e + +++ l++e a+  + + + k+ +    +ev++lk+e +ale+ 
  CDO69122.1 134 INRLRNQSTAVMKERQAVMQETAELEQRMTDFKVKRAEDEPKCEALRQENAALMEQVIAYKDRQMgflQEVESLKQEKSALEKV 217
                 678888888888999999999999999999988888888888888877766654443333333322238999999999988875 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00038
        Spc7 147 nlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 + e+l+++++ L++q    ++    + +e ++l++e   l++   e++++ +e+++ +r+++++  + i+   ++++++    +e + +i++ +++ ++
  CDO69122.1 175 KCEALRQENAALMEQVIAYKDRQMGFLQEVESLKQEKSALEKVTSEMATV-SENINRTRSRIVQSPERIK---RNISTMGHTAAEEKRTIAANEAKTRD 269
                 578999999*******9*************************99998876.789*********9999998...9************************* PP

        Spc7 246 leeeiaeaer 255
                 l+++ia+  +
  CDO69122.1 270 LQTKIAALLN 279
                 *****97655 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 3.3e-05
        Spc7 206 eelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkale 279
                 ++l+++++e+  +k+ l++++ +++el  + e +++q s+++e++++a+r  e ++  s++ ++rl+ e++++ 
  CDO69122.1 303 RALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQFSNAQEKLERAQRHAEDKRIASQQTIERLQREYEEMS 376
                 679999****************************************************************9985 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   8.6   9.1e-05      0.13      48     124 ..     133     209 ..     109     216 .. 0.75
   2 ?    0.2  15.2      0.75     1e+03      44      99 ..     293     355 ..     207     358 .. 0.79
   3 ?    3.1   8.9     0.094   1.3e+02      77     123 ..     351     397 ..     347     402 .. 0.38

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.1e-05
      APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldslea 124
                  +++l+++  ++ ke+++ ++e +ele+   + + ++a+ e ++eal +e+++ +++  +++  ++ + +e +sl+ 
  CDO69122.1 133 FINRLRNQSTAVMKERQAVMQETAELEQRMTDFKVKRAEDEPKCEALRQENAALMEQVIAYKDRQMGFLQEVESLKQ 209
                 56777888888888888888888888888888888888888888888888888888888888888888888888875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.75
      APG6_N  44 k.......qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99 
                 +       +   l+++++el +l+++ +++  e +el   re++ ++ ++++e+le+ ++  e
  CDO69122.1 293 DvmpviekEMRALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQFSNAQEKLERAQRHAE 355
                 2666666566788999**************************************999887655 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.094
      APG6_N  77 reeleaelaaleeelealeeeeerfwreynelqlelleleeeldsle 123
                 ++  e+++ a +++ e+l++e e+   e+++ +++++el  e d +e
  CDO69122.1 351 QRHAEDKRIASQQTIERLQREYEEMSVERRDNDRQVEELRAEADEIE 397
                 33333333333333444444444444444444444444433333333 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.4     2e+03      17      42 ..     137     162 ..     135     163 .. 0.79
   2 ?    7.1   0.0    0.0046       6.4      21      37 ..     176     192 ..     174     197 .. 0.86
   3 ?    4.4   0.1     0.031        43      20      33 ..     203     216 ..     200     222 .. 0.86
   4 ?    0.5   0.2      0.52   7.1e+02      16      40 ..     367     391 ..     365     396 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
        HALZ  17 LksdydsLkkenekLkaelqeLkekl 42 
                 L+ +  ++ ke+++  +e +eL +++
  CDO69122.1 137 LRNQSTAVMKERQAVMQETAELEQRM 162
                 56666788899999999999998876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0046
        HALZ  21 ydsLkkenekLkaelqe 37 
                 +++L++en +L  ++  
  CDO69122.1 176 CEALRQENAALMEQVIA 192
                 89************975 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.031
        HALZ  20 dydsLkkenekLka 33 
                 +++sLk+e+ +L++
  CDO69122.1 203 EVESLKQEKSALEK 216
                 789********986 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.52
        HALZ  16 aLksdydsLkkenekLkaelqeLke 40 
                  L+ +y+ +  e++    +++eL++
  CDO69122.1 367 RLQREYEEMSVERRDNDRQVEELRA 391
                 4555666666777777777777776 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.0   0.00047      0.64      15     100 ..     138     223 ..     130     238 .. 0.92
   2 ?   -0.4   4.7      0.43   5.9e+02      15      74 ..     264     323 ..     249     352 .. 0.63
   3 ?    8.9   9.9   0.00061      0.84      26      88 ..     338     400 ..     327     403 .] 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00047
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvp 100
                  ++ +++ ke ++ +++ a+ ++++++ + +++e + + +al++e+++l  +   +++ +    qe++sl+++++ +e++ +e+  
  CDO69122.1 138 RNQSTAVMKERQAVMQETAELEQRMTDFKVKRAEDEPKCEALRQENAALMEQVIAYKDRQMGFLQEVESLKQEKSALEKVTSEMAT 223
                 688999*************************************************************************9999865 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlv 74 
                 +a+ ++++ + ++  +++++s++ i +  d    +++e+ral + +++l   ++ l+r  
  CDO69122.1 264 EAKTRDLQTKIAALLNIEKASHSLIRSAFDVMPVIEKEMRALDAAQKELGDLKDTLDRKK 323
                 667777777888888888888888888888888888888887776666654444444433 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00061
     DUF3450  26 ekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqi 88 
                 ++  +a+++ ++ + + +d++   ++ +++l++e e+++v+++  +r+v+++++e +++e++ 
  CDO69122.1 338 KQFSNAQEKLERAQRHAEDKRIASQQTIERLQREYEEMSVERRDNDRQVEELRAEADEIERKV 400
                 444555555555566666666666666777777777777777777777777777777666654 PP

>> Lipoprotein_6  Lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.35   4.9e+02      93     115 ..     126     148 ..     120     175 .. 0.76
   2 ?    3.6   0.6     0.043        60      72     128 ..     175     231 ..     162     262 .. 0.69
   3 ?    7.6   0.2    0.0026       3.6      56     112 ..     285     341 ..     272     363 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.35
                    HHHHHHHHHHHHHHTHHHHSSS- CS
  Lipoprotein_6  93 vkkkseaflnklkekhadlgked 115
                      ++se f+n+l+++ + + ke 
     CDO69122.1 126 FSEQSEVFINRLRNQSTAVMKER 148
                    56789999999999999998875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.043
                    HHHT---TT.....THHHHHHHHHHHHHHHHH...HHHTHHHHSSS---HHHHHHHH-TT CS
  Lipoprotein_6  72 klkaLekeaekfnelkakvvavkkkseaflnk...lkekhadlgkedatDedakkailks 128
                    k +aL++e+   ++l ++v+a k++   fl+    lk++++ l k   + + + + i ++
     CDO69122.1 175 KCEALRQEN---AALMEQVIAYKDRQMGFLQEvesLKQEKSALEKVTSEMATVSENINRT 231
                    556666665...89999*********9998652226777777777666555555555544 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0026
                    HHHHHHHHHHHHHHHHHHHT---TT.....THHHHHHHHHHHHHHHHHHHHTHHHHS CS
  Lipoprotein_6  56 GsLlagvfsvilavktklkaLekeaekfnelkakvvavkkkseaflnklkekhadlg 112
                     sL+ ++f+v+  +++ ++aL++ +++  +lk  +   k +  +++ +    h +++
     CDO69122.1 285 HSLIRSAFDVMPVIEKEMRALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQFS 341
                    59*********************************9999998888877666666655 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.7   0.00099       1.4       4      37 ..     202     235 ..     200     249 .. 0.86
   2 ?    0.6   0.2      0.34   4.7e+02      17      17 ..     334     334 ..     297     364 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00099
   DASH_Duo1   4 kEleqLrkinevienviesLkkaksniervketv 37 
                 +E+e+L++  +++e+v++++ ++++ni+r  +++
  CDO69122.1 202 QEVESLKQEKSALEKVTSEMATVSENINRTRSRI 235
                 7999999999999999999999999999987765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.34
   DASH_Duo1  17 e 17 
                 e
  CDO69122.1 334 E 334
                 2 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.9    0.0077        11      84     134 ..     134     184 ..     125     192 .. 0.80
   2 ?    5.7   3.4     0.007       9.6      10      93 ..     194     276 ..     187     291 .. 0.83
   3 ?    9.8  16.4   0.00038      0.53      48     133 ..     304     393 ..     281     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0077
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  84 ledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeela 134
                 +++lr++    +++r++v +e ++l + + +  ++r++ e k+e+L++e a
  CDO69122.1 134 INRLRNQSTAVMKERQAVMQETAELEQRMTDFKVKRAEDEPKCEALRQENA 184
                 456777777778999999999999999999999999999999999988755 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.007
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  10 NdrlAsYidkVraLEqenkeLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyek 93 
                  dr   ++  V +L qe+++Le   +e+  + s+++++ ++   +  e +++++ ++ +  a  +  +   +++ +dl++k++ 
  CDO69122.1 194 KDRQMGFLQEVESLKQEKSALEKVTSEMATV-SENINRTRSRIVQSPERIKRNISTMGHTAAEEKRTIAANEAKTRDLQTKIAA 276
                 5888899999999999999999988888888.8888889999999999999999999998888888888888888888888765 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00038
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  48 lkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke....lnkreevEaelkalrkdldeatlarvdLekkvesLkeel 133
                   ++ +kel +l+++ld+ + era l++ +++++++  + ++k+e+       kr +  ++++ l+++ +e +++r d +++ve+L+ e 
  CDO69122.1 304 ALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQFSNAQEKLERAqrhaEDKRIASQQTIERLQREYEEMSVERRDNDRQVEELRAEA 393
                 4566799*************************************98855545577788999*************************9775 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   2.1       0.5   6.9e+02      48     109 ..     135     196 ..     125     211 .. 0.67
   2 ?   12.6   1.9   7.9e-05      0.11      41     106 ..     212     277 ..     206     288 .. 0.91
   3 ?    6.7   5.1    0.0052       7.2      43     103 ..     333     400 ..     322     402 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.5
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109
                 ++l + s+++ + ++  +++ +++++++ + k   +e + + +++r++ +++ e+v + k+ 
  CDO69122.1 135 NRLRNQSTAVMKERQAVMQETAELEQRMTDFKVKRAEDEPKCEALRQENAALMEQVIAYKDR 196
                 66777778888888888888888888888877777777777777777777666666555555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.9e-05
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                 +a+e+v++++ +vse++++t+ ++ +  +r+ +++  + ++++e k+ +++ + +++++++++ ++
  CDO69122.1 212 SALEKVTSEMATVSENINRTRSRIVQSPERIKRNISTMGHTAAEEKRTIAANEAKTRDLQTKIAAL 277
                 799***********************************************9999999999888765 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0052
     DUF1664  43 vesvskqleqvseslaatkrhL.......ssridrvdkkldeqkeiskeikeevtevredlseigedv 103
                  e+v kq  + +e+l++++rh        ++ i+r++++ +e++   ++ +++v+e+r + +ei+++v
  CDO69122.1 333 RERVHKQFSNAQEKLERAQRHAedkriasQQTIERLQREYEEMSVERRDNDRQVEELRAEADEIERKV 400
                 45667777777777777666652222222678999999999999999999********9999999887 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.2    0.0025       3.5       4      69 ..     114     179 ..     112     189 .. 0.79
   2 ?    3.1   2.9       0.1   1.4e+02       5      52 ..     185     235 ..     175     282 .. 0.53
   3 ?    7.9   4.6    0.0035       4.9      15      79 ..     303     374 ..     289     375 .. 0.69
   4 ?    0.3   0.3      0.79   1.1e+03      17      45 ..     365     393 ..     355     401 .. 0.40

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelseg 69 
                 +++f+++ ++ +  e+    +++l+++ +++++e +++  e  +l +r+++ + k++e++ + +  
  CDO69122.1 114 RSIFSAFINFIKFSEQSEVFINRLRNQSTAVMKERQAVMQETAELEQRMTDFKVKRAEDEPKCEAL 179
                 67888999999999999999*****************************66666555555554443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLel...eneklrerl 52 
                  l++++ + +++ + +l+e+e+lk+e ++l +  +e+ +   + ++ r+r+
  CDO69122.1 185 ALMEQVIAYKDRQMGFLQEVESLKQEKSALEKVTSEMATvseNINRTRSRI 235
                 455555555555555555555555544433333333333000223333333 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  15 eqleelleeleelkeelaelleenaeLeleneklrerl.......eeeekkekekkkelsegkenLarlYee 79 
                 + l++ ++el++lk++l +   e aeL +  e++++++       e++++++++k+ +++++ e L+r Yee
  CDO69122.1 303 RALDAAQKELGDLKDTLDRKKGERAELVMRRERVHKQFsnaqeklERAQRHAEDKRIASQQTIERLQREYEE 374
                 445667889999999999999999999999999988887766544555555555556666666666666665 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  17 leelleeleelkeelaelleenaeLelen 45 
                 +e+l++e ee+  e  +   + +eL++e 
  CDO69122.1 365 IERLQREYEEMSVERRDNDRQVEELRAEA 393
                 33333333333333333333333333333 PP

>> Scaffolding_pro  Phi29 scaffolding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.4     0.075     1e+02       5      91 ..     128     221 ..     125     230 .. 0.71
   2 ?   -0.8   0.2       1.6   2.3e+03      34      80 ..     213     256 ..     188     273 .. 0.52
   3 ?    8.6   0.6     0.002       2.8      25      59 ..     362     396 ..     345     403 .] 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.075
                      HHHHHHHHHHTSTTS-HHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH...CH..HHXXXXXXXXXXXX CS
  Scaffolding_pro   5 eehedilndlldPelaieertealqt....lrvdyvevvveysdltksieklkvekddlivsn.sklfrkiGldggte..kqkkdekkadises 91 
                      e+ e  +n l +  +a+ +  +a+++    l +  ++++v+ ++   + e+l+ e + l+    +   r++G+    e  kq+k   ++  se 
       CDO69122.1 128 EQSEVFINRLRNQSTAVMKERQAVMQetaeLEQRMTDFKVKRAEDEPKCEALRQENAALMEQViAYKDRQMGFLQEVEslKQEKSALEKVTSEM 221
                      899999*********99888888876344477788999999999999999***99999965431344688887554442245555545555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...CHHHX CS
  Scaffolding_pro  34 dyvevvveysdltksieklkvekddlivsnsklfrkiGldggtekqk 80 
                         +v +e ++ +   e+++  ++ ++ s  ++ r+i   g t   +
       CDO69122.1 213 ALEKVTSEMATVS---ENINRTRSRIVQSPERIKRNISTMGHTAAEE 256
                      3333333333333...3333344445556666666666655555444 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.002
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Scaffolding_pro  25 tealqtlrvdyvevvveysdltksieklkvekddl 59 
                       +++ +l+ +y e+ ve  d  +++e+l++e d++
       CDO69122.1 362 QQTIERLQREYEEMSVERRDNDRQVEELRAEADEI 396
                      47788999***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2465  (0.137487); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.13u 0.37s 00:00:01.50 Elapsed: 00:00:00.56
# Mc/sec: 2181.18
//
Query:       CDO69123.1  [L=1135]
Description: hypothetical protein BN946_scf185042.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-18   67.5   0.0    4.5e-18   65.6   0.0    1.9  2  Helicase_C       Helicase conserved C-terminal domain
    1.5e-15   57.4   0.0    3.8e-15   56.1   0.0    1.6  2  DEAD             DEAD/DEAH box helicase
    1.8e-12   47.1   0.0    4.4e-12   45.8   0.0    1.7  2  RQC              RQC domain
    3.2e-08   34.2   5.1    7.8e-08   32.9   5.1    1.7  1  RecQ_Zn_bind     RecQ zinc-binding


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.9     4e+03      19      66 ..     477     525 ..     470     533 .. 0.72
   2 !   65.6   0.0     1e-21   4.5e-18       8     110 ..     645     748 ..     638     749 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.9
                 EEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH.TTS CS
  Helicase_C  19 ilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfn.kge 66 
                 ++++++ i+ + +  + l  k  g+ + +l  e++ ++r +  ++ + +g+
  CDO69123.1 477 TVVVSPLISLIRDqHRAL--KGlGVDAEILVQEMSESDRSDLWRRLRgNGK 525
                 677777777665434444..33599999***********999999876555 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 1e-21
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHT CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriG 105
                 + +k++  +++ +i++ ++d++e+ +k+l+ k+++++  +h+++   ++ ++ +++ +g++++++at + ++Gid p+v++Vi+ +lp ++  y q  G
  CDO69123.1 645 DWIKSTYPRDTGIIYCSSRDKCEEiAKILRDKFQLSARHYHAQMADTDKSHVQREWSSGKVRIIVATVAFGMGIDKPDVRYVIHHSLPNSLNGYYQETG 743
                 445777788999**********9999************************************************************************* PP

                 TSSST CS
  Helicase_C 106 RtgRa 110
                 R+gR 
  CDO69123.1 744 RAGRD 748
                 ****6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   8.5e-19   3.8e-15       2     168 ..     437     598 ..     436     605 .. 0.78
   2 ?   -3.4   0.0       1.5   6.9e+03      54     104 ..     660     711 ..     646     713 .. 0.52

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 8.5e-19
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.. RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ng.. 97 
                 + Q eai  +++g dv+v  +TGsGK+l f++p++         +   +++v+P+ +L++++++ lk ++  +++ v+  +++++++d +++l+ ng  
  CDO69123.1 437 PLQLEAICDAMEGLDVFVLFPTGSGKSLTFQLPAV--------CQDGVTVVVSPLISLIRDQHRALKGLGVDAEILVQ-EMSESDRSDLWRRLRgNGkp 526
                 78*********************************........345589*********************98775444.67889999******865589 PP

                 CSEEEEEHHHHHH.HH...HCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESS CS
                 xxxxxxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrldd.ll...stgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSAT 168
                 + +++ tp+rl    +    t+  +  ++  +V+DEa+ + d+  +f+d + + l++l++     +    + +l+ T
  CDO69123.1 527 PSLLYITPERLELdGMrsvLTRLRQEGKLCRFVIDEAHLITDWgrSFRDSYVQ-LKTLKTVFPGVP----ISALTGT 598
                 ***********863334443333334556669***********7777777777.666655555555....5555555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
                 ESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHHHTTCSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  54 ePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskldngvdivvgt 104
                 + +r  +e++++ l+  ++     +++ +   ++ + q++  + +v+i+v+t
  CDO69123.1 660 CSSRDKCEEIAKILRDKFQLSARHYHAQMAdTDKSHVQREWSSGKVRIIVAT 711
                 5556666666666666666433333333331333333333333347777776 PP

>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   9.9e-16   4.4e-12       4     109 ..     832     945 ..     829     949 .. 0.92
   2 ?   -4.0   0.0       2.7   1.2e+04      69      91 ..    1068    1093 ..    1067    1111 .. 0.62

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 9.9e-16
                 EEE-HHHHHHHHHHHHHT..TS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEE.......SSS.BEEE-CCGH CS
         RQC   4 tvDvteeaqkilscvyrt..gqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyLeedve.....eyg.vlkltekar 94 
                 t D t +aq +l++ + +  + r++ +++++ L+Gsk +   ++g+++ + +G +++ls+  + rli+q+i +++L+  +e     + + +l l+++a+
  CDO69123.1 832 TEDHTGDAQRALRLFENLsrDSRLTPTQLSAALKGSKAQLQVERGWTNDPLHGTCSHLSQDVIDRLIDQMIWHDFLSIRTErsqdaYSQnYLALGSRAN 930
                 7899**************8779******************************************************77777788974457********* PP

                 HHHTSSS--EEESHH CS
         RQC  95 evlkgeekvklreek 109
                 ++  g+++++++++ 
  CDO69123.1 931 ALRTGQQNLTISFRA 945
                 ********9998865 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.7
                  HHHHHTTSEEEE.....SSSBEEE-C CS
         RQC   69 rqLiaegyLeedve...eygvlklte 91  
                   q ia+gy++e ++    y+v ++ +
  CDO69123.1 1068 SQTIADGYVSEIEDepaPYRVTMIRP 1093
                  58899999944444244444555554 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   5.1   1.7e-11   7.8e-08       3      66 .]     762     825 ..     760     825 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.7e-11
  RecQ_Zn_bind   3 DvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgn.CDnCl 66 
                   D+++  ++i+ ++ s++++  e + ++++++y+ n++eCrrk++l+ F e+++ ++C + C nC+
    CDO69123.1 762 DFHTRLSMIR-NQPSKENRTFEEDDIRRVMSYVMNDVECRRKQVLSFFCEDFDPARCRRmCNNCR 825
                   8899999**5.555788899999***************************99999**666****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 7434.90
//
Query:       CDO69124.1  [L=79]
Description: hypothetical protein BN946_scf185042.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 587.85
//
Query:       CDO69125.1  [L=648]
Description: hypothetical protein BN946_scf185042.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4473.37
//
Query:       CDO69126.1  [L=333]
Description: hypothetical protein BN946_scf185042.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.8   0.3     0.0026   17.8   0.3    1.4  1  DUF1156   Protein of unknown function (DUF1156)


Domain annotation for each model (and alignments):
>> DUF1156  Protein of unknown function (DUF1156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   1.4e-07    0.0026      10      57 ..      51     100 ..      42     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.4e-07
     DUF1156  10 esakEksirhghlstLhlWWaRrPLaaaRAvifaqLvpdpss..eleegk 57 
                  + +E++ + +h+ tL  W +R+PL a+  ++ a Lv    +  +l e++
  CDO69126.1  51 DCWREETKKVHHVDTLEDWASRKPLWASIEALAANLVQGYVAdmHLPEMH 100
                 588*********************************98733344333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2586.40
//
Query:       CDO69127.1  [L=293]
Description: hypothetical protein BN946_scf185042.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-08   34.1   0.0    5.7e-08   32.9   0.0    1.6  1  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   3.2e-12   5.7e-08      25      94 ..      85     157 ..      66     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 3.2e-12
  Retrotrans_gag  25 a....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekflaGL 94 
                     +    ++ ++ ++++++ +f p + + ++e+el sl+  ++  ++ Y+t+f++la+q++  +   a+  +f++GL
      CDO69127.1  85 TppvfMSDYQAFQDELRVNFGPYDISGDAEQELESLQMsNSDRISWYITEFNHLATQVR--WGSSALRYQFYRGL 157
                     245567889**************************************************..*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2127.06
//
Query:       CDO69128.1  [L=404]
Description: hypothetical protein BN946_scf185042.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2737.64
//
Query:       CDO69129.1  [L=124]
Description: hypothetical protein BN946_scf185042.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-15   55.1   1.2      5e-15   55.0   0.3    1.5  2  LSM       LSM domain
  ------ inclusion threshold ------
      0.034   14.3   0.0       0.05   13.7   0.0    1.2  1  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.3   5.6e-19     5e-15       2      66 ..      12      75 ..      11      76 .. 0.97
   2 ?   -2.2   0.0      0.39   3.5e+03      55      66 ..     107     118 ..      98     119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 5.6e-19
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                +l++++++++tvelk g+ +rG+L + ++++N+ L+d+++t++d+ ++ +l++v+iRG+ +++ +
  CDO69129.1 12 LLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDG-RVSQLDQVYIRGSMVRFFI 75
                799******************************************.***************9976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.39
                 EEEEGGGEEEEE CS
         LSM  55 vliRGnnivlis 66 
                 ++ RG  i+l s
  CDO69129.1 107 TIMRGAFIILFS 118
                 577999999876 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.6e-06      0.05       7      51 ..      12      54 ..      10      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-06
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                ll  + G+ ++v++k G  y+G +  +    +++++Lk   +++ 
  CDO69129.1 12 LLHESLGHIITVELKTGQLYRGKLAEAED--NLNISLKDITVTQR 54
                788999*********************99..99999997666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 935.65
//
Query:       CDO69130.1  [L=916]
Description: hypothetical protein BN946_scf185042.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-71  241.6  24.8    4.8e-70  236.6  22.1    2.6  2  Voltage_CLC   Voltage gated chloride channel
     0.0066   16.9   0.0        3.7    8.1   0.0    2.7  2  CBS           CBS domain
  ------ inclusion threshold ------
        0.8    9.2   0.0        0.8    9.2   0.0    2.8  4  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0029        17     190     279 ..     186     336 ..     176     337 .. 0.54
   2 !  236.6  22.1     8e-74   4.8e-70       6     353 ..     347     712 ..     346     713 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0029
                  HHHHCHHCHHHH.HHHHHHHHHHHHHHHCCCS.....CC.CSSSSCCH.................................................. CS
  Voltage_CLC 190 rlfrkleklkik.krlepalvgllvgllglll.....pasvlgggyel.................................................. 231
                  rl+r+l   + +  +l + ++g+l++++++l+     +         l                                                  
   CDO69130.1 186 RLRRQL---DRSiGWLTVTIIGFLTAVVAFLIvrseqW---------Lfdikeghcttniwnakrfccpvqddslharqtpafvalpdeescsawrtw 271
                  344444...33336999************998333330.........233333455556666666666666666666666666666666666666666 PP

                  ...............HHHHCTT-S-.....HHHHHH...HHHH.HHHHHHHHHCTT-CSBSHHHHHHHH CS
  Voltage_CLC 232 ...............iasllegstl.....llsllllllllll.kllataltlgsgvpgGifaPsLviG 279
                                  ++++    +      ++l l ++++ll  +l+++ ++ +   +G++ P+ ++G
   CDO69130.1 272 geffapvatseggwlKQEAI----EyavytVIALSLATVAALLtIFLTASTSFVTRKDSGVLSPTYATG 336
                  66665555555555433333....022223233333333333304444455667777788888876666 PP

  == domain 2  score: 236.6 bits;  conditional E-value: 8e-74
                  HHHCCCCC-GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT..-S-BTHHHHHHHHHHHHHHHHHH.TT.--SHHHHH.HHHHHHHH CS
  Voltage_CLC   6 agllvklvapeaagsGipevkaalngvkgp..lslrvllvkflasvltvgsG..lslGreGplvqiGAavgsglsrl.lklsrndrdrr.lvaaGaAA 97 
                  ag + ++v  +aagsGipe+k++l+g+ ++  l  r++    l++ ++   G   ++G+eGp+v+i++++g+++sr+ +k+++n+ +rr +++a++AA
   CDO69130.1 347 AGTIQRKVLHYAAGSGIPEIKTILSGFVIHgyLGGRTF----LGLPFVSNQGrrSFTGKEGPFVHIASCIGNIVSRFfIKYETNEGKRRgILSAACAA 440
                  5678889999*****************98766666665....5555555555559********************98788899999999********* PP

                  HHHHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
  Voltage_CLC  98 GiAAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgeepafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkl 195
                  G+A+aF+aP+gGvlf+lEevs  f  ++++++f++++vaa++lr+l  + +  g+++ lf++               G++ga+f++l+++++r +r+ 
   CDO69130.1 441 GVAVAFGAPIGGVLFSLEEVSYFFPAKVMWRSFFCAMVAAMTLRFL--DPFRSGKLV-LFQV-----------TYDKGVYGAWFSKLNYRWSRDVRNA 524
                  **********************************************..444455333.2333...........3556***************988887 PP

                  HCHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-..................HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHH CS
  Voltage_CLC 196 eklkikkrlepalvgllvgllglllpasvlgggyeliasllegstl..................llsllllllllllkllataltlgsgvpgGifaPs 275
                    lk ++++e++lv+l++++ +++ p  +  gg+el+ +l++++ +                  +  + +++++ll+k ++t++t+g++vp+Gif+P+
   CDO69130.1 525 TWLKRHPVVEVLLVTLVTAIFSFMNPY-TRMGGTELVYNLFAECRSgssnthsglcvldpptqaIPVIRSIFIALLVKGALTIVTFGIKVPAGIFIPT 621
                  645555889*****************8.777888889999966655667799***********99999999*************************** PP

                  HHHHHHHHHHHHHHHHHH-C............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 276 LviGAalGrlvglvlalllp............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  L +GA++Gr++g +++++              g+  +  pg++a+vG+aa+l+gvtr++++++vi++Elt++l++++p+ml+vl+Ak +ad
   CDO69130.1 622 LGVGACAGRILGILIQWAQYsypasaafavckGDLNCvIPGLYAMVGAAATLSGVTRTTVSLAVIMFELTDTLTYAVPVMLSVLVAKTIAD 712
                  ************99999844778999999***999999**************************************************997 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0029        17       3      46 ..     752     800 ..     745     809 .. 0.76
   2 !    8.1   0.0   0.00062       3.7       5      54 ..     858     907 ..     853     910 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0029
                 HHSBSSCEEEETTSBHHHHHHHH...HHHT..SSEEEEE..ETTT.BEEEEE CS
         CBS   3 dimtrdvvtvppdttleealelm...rekg..vsrlPVV..dedg.klvGiv 46 
                 d+   dv+ v+ + t++ + +++   +e++   s++P++  d+dg + +G++
  CDO69130.1 752 DV---DVIRVDRENTVKSLRDQLqelVESRnsDSGFPILrpDGDGlRMIGYI 800
                 45...88999999888888888733323333569******999999999998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00062
                 SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllra 54 
                 m   ++tv  +++le + +l+++ g  r+ VV d dg++ G++ ++  l +
  CDO69130.1 858 MDQAPLTVQDNSPLELVQQLFTKLGA-RYVVVtDVDGHYQGVIDKKTWLAF 907
                 777799***************66444.4434579999******98766655 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00013       0.8     101     146 ..     177     222 ..     167     233 .. 0.85
   2 ?   -1.8   0.2      0.31   1.8e+03     121     142 ..     295     316 ..     283     324 .. 0.50
   3 ?   -3.9   0.0       1.4   8.5e+03      17      39 ..     593     615 ..     591     618 .. 0.83
   4 ?   -3.6   2.3       1.1   6.8e+03     144     168 ..     681     707 ..     658     714 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00013
                   S--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTH CS
  E1-E2_ATPase 101 veeakskktplqkkldklgkvlvpvvlliallvflialllgkslae 146
                   +++ ksk+ +l ++ld+ +++l+++++ ++ +v+++++++ +++ +
    CDO69130.1 177 LRRYKSKRGRLRRQLDRSIGWLTVTIIGFLTAVVAFLIVRSEQWLF 222
                   455679***********************99999999999888765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
                   HHHHHHHHHHHHHHHS-STTTS CS
  E1-E2_ATPase 121 vlvpvvlliallvflialllgk 142
                   v+++++l +a +++l++++l+ 
    CDO69130.1 295 VYTVIALSLATVAALLTIFLTA 316
                   3444444444444444444333 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.4
                   EEEGGG--TTSEEEEETT-B--S CS
  E1-E2_ATPase  17 eidakelvpGDivllkagdrvpa 39 
                   +i ++ lv G + ++  g +vpa
    CDO69130.1 593 SIFIALLVKGALTIVTFGIKVPA 615
                   67788899999999999999998 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.1
                   TT..HHHHHHHHHHHHHS-TTHHHHHH CS
  E1-E2_ATPase 144 la..eallralallvaaiPcaLplavp 168
                   +    ++++  ++l+ a+P  L ++v 
    CDO69130.1 681 VSlaVIMFELTDTLTYAVPVMLSVLVA 707
                   223233444666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6511.04
//
Query:       CDO69131.1  [L=457]
Description: hypothetical protein BN946_scf185042.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   41.4   0.0    5.4e-09   36.2   0.0    2.4  1  DUF3506     Domain of unknown function (DUF3506)
     0.0082   16.0   0.3      0.016   15.1   0.3    1.5  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.036   14.0   0.2      0.092   12.7   0.2    1.7  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> DUF3506  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     9e-13   5.4e-09      19     131 ..     328     423 ..     318     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 9e-13
     DUF3506  19 kPfqgiyvgdysghgceflllkqkdkddeaelekeedeseeeaekrkeergrleAiKLtGDpnvPrGevtFva........edlgeeGlvrvaeeeefk 109
                 + ++gi+ g+y++ g+e + l + +                       e+g++eA K+tGD++vPrG v++++        +    +G+ +  + +   
  CDO69131.1 328 DNLDGIWYGSYGPNGTECIYLAHDE-----------------------EHGTVEATKITGDLHVPRGCVSWIVhlpldnqmPT--LQGYWTSVRSDGVM 401
                 5678999999999999999999873.......................48***********************9999954433..46999999999999 PP

     DUF3506 110 GarvvkskghiAeegFrndkfv 131
                   r++ ++g iA +gF++   v
  CDO69131.1 402 PNRLLMGHGTIAGRGFTDMAIV 423
                 ****************997766 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   2.6e-06     0.016       6      47 ..      25      66 ..      23      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksi 47
                LP +++++ L + + +d+++l  ++k +r  +++ ++w++ +
  CDO69131.1 25 LPFDIVHELLDFASIIDVVSLCNTCKALRAHLKNESIWKRAC 66
                9*************************************9866 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.5e-05     0.092       4      46 ..      25      66 ..      22      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                LP +i  + +++ +  d ++l+ +C+  r    ++ ++W+r +
  CDO69131.1 25 LPFDIVHELLDFASIIDVVSLCNTCKALRAHLKNE-SIWKRAC 66
                7888888888887778***************9999.****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.57
# Mc/sec: 2398.98
//
Query:       CDO69132.1  [L=238]
Description: hypothetical protein BN946_scf185042.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-16   59.8   0.1    5.7e-15   55.2   0.0    2.2  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type
     0.0042   16.8   1.5     0.0073   16.0   1.5    1.4  1  zf-CCHC_4        Zinc knuckle
     0.0079   16.2   3.0     0.0079   16.2   3.0    1.8  2  zf-CCHC          Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   9.6e-19   5.7e-15       1      75 [.      23      97 ..      23     108 .. 0.97
   2 ?    2.7   0.1     0.015        89     115     137 ..     118     140 ..      97     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 9.6e-19
  Retrotran_gag_2  1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkle 75
                     wkkkdakal +I+l +++++l + ++++take+Wd+L+++++ +++   ++ r++lf+ ++ e+ +v++h++++ 
       CDO69132.1 23 WKKKDAKALRAIRLRLAKDVLVYAQDATTAKEAWDTLADTFQPTGPIGIVMARRRLFRAQCPETRDVEEHLRQMH 97
                     9**********************************************************************9986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.015
  Retrotran_gag_2 115 seedltleevieklleeeerrke 137
                      ++ +lt  ++i+++l+e++r+k+
       CDO69132.1 118 QQAKLTSAKLIARILQEDRRLKQ 140
                      5678999************9987 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.5   1.2e-06    0.0073      32      48 ..     159     176 ..     158     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-06
   zf-CCHC_4  32 sf.CyiCgvlGHsdkrCd 48 
                 +f C++Cg+ GH+ ++C+
  CDO69132.1 159 RFtCFNCGRRGHKQDKCR 176
                 555**************7 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.87   5.2e+03      13      18 .]      80      85 ..      79      85 .. 0.75
   2 !   16.2   3.0   1.3e-06    0.0079       2      17 ..     161     176 ..     160     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.87
                TTTSTS CS
     zf-CCHC 13 ardCpk 18
                  +Cp+
  CDO69132.1 80 RAQCPE 85
                679*96 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-06
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C+nCG+ GH    C 
  CDO69132.1 161 TCFNCGRRGHKQDKCR 176
                 7*********999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1399.88
//
Query:       CDO69133.1  [L=385]
Description: hypothetical protein BN946_scf185042.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-09   35.7   0.1    1.1e-07   31.8   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.015   15.9   0.1      0.018   15.7   0.1    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.2e-11   1.1e-07      41     100 ..     102     170 ..     100     177 .. 0.79
   2 ?    1.6   0.0     0.019   1.7e+02     201     256 ..     285     365 ..     238     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.2e-11
                    TTSSSTTTGB..........CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEE CS
  Abhydrolase_1  41 gySspapacin.........ddygtasvaddldrildalgddklt.lvGhSmGGmialayaaeyperVka 100
                    ++Ss +++++          + y++ +v++ +  + +al+++k + ++G+SmG ++a ++a +yp+ V +
     CDO69133.1 102 CQSSSPSNTPApyngpyfpaVSYED-NVRAQYAVLTQALNIQKAHcVIGFSMGAQQAYYWAVMYPDFVEK 170
                    6677777776678885555444443.566666677*******************************9976 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.019
                    HHHHHC.......................THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS..EEEEEEETCSSSHHHHS CS
  Abhydrolase_1 201 llrlre.......................lknvlaptlvisgtsDplvppkaledlaqllpk..krlvvisdagHlafleg 256
                    l  ++                        l  ++a+ lv+ +++D ++pp+ ++   +l ++  k++v++s +gH+ ++++
     CDO69133.1 285 LHTWQTgdvslvgktgliscaddhafataLAGIKAKGLVMPSRTDLYFPPEDSRIEVSLMKNsaKLVVIDSVWGHMGLFLN 365
                    444444555566666666666666666666678889999999********88888888955557899999999**999876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.1     2e-06     0.018      40     166 ..     117     268 ..      22     366 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-06
                    -GGCS--HHH.CHHH.HHHHCCTT..TTSE.EEEEETCHHHHHHH.HHHCC...................EE..EEES-................. CS
  Abhydrolase_6  40 sdpppldled.ladl.aalldelaagggpv.vlvGHSlGGalala.aapla.................lvvg..vlldp..............pp. 97 
                    +  p+ ++ed ++++ a l ++l     ++ +++G S+G+  a   a++                     ++  v++++              p  
     CDO69133.1 117 PYFPAVSYEDnVRAQyAVLTQALN--IQKAhCVIGFSMGAQQAYYwAVM-YpdfvekyarvdllrallT-ASrfVAVCGsartsqhnkcflegPKa 208
                    455667777766555366666664..55567**********99993333.3588888888875555431.11344444444444444443332113 PP

                    ........----TTT......S----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC....HTTCCHH CS
  Abhydrolase_6  98 ........talpagl......laaalelllallallrllawlsreplprlfladedadaawrarlarlaallaglg....llpaaaw 166
                                  +      ++  ++ ++++++                      a+a+ +++++++  l++gl+     + +a+w
     CDO69133.1 209 alvnskdfD-----NghytqePQLGIRAFARVYS----------------------AWAYGQTWFREHGYLMDGLYssldNFLRAEW 268
                    222221110.....12222221111111111111......................2333333333333222222211111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2689.39
//
Query:       CDO69134.1  [L=145]
Description: hypothetical protein BN946_scf185042.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-49  165.7   1.1      3e-49  165.4   1.1    1.1  1  Ribosom_S12_S23  Ribosomal protein S12/S23


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   1.1   1.7e-53     3e-49       2     114 .]      32     144 ..      31     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 1.7e-53
                      -------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEBE CS
  Ribosom_S12_S23   2 kelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykvv 95 
                      ++l++  k+++  g+++++G+vlekv+veak+PnsA+Rk+vrv+Likngk+vtaf+p++g+lnf+dE+devl+ G++r+gka++D+pGvr+kvv
       CDO69134.1  32 RALGNIYKTSPTGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLISGFGRRGKAKGDIPGVRFKVV 125
                      667778899************************************************************************************* PP

                      TS---TSSSTTTTT----T CS
  Ribosom_S12_S23  96 kvagvslkalskykkekpk 114
                      kv+gv l al+k+kkekp+
       CDO69134.1 126 KVSGVGLLALWKEKKEKPR 144
                      *****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1008.94
//
Query:       CDO69135.1  [L=610]
Description: hypothetical protein BN946_scf185042.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-73  245.5  20.7      1e-72  245.1  20.7    1.2  1  CTP_transf_1  Cytidylyltransferase family


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.1  20.7   5.7e-77     1e-72       2     265 ..     223     565 ..     222     566 .. 0.95

  Alignments for each domain:
  == domain 1  score: 245.1 bits;  conditional E-value: 5.7e-77
                   HHHHHHHHHHHHHHHTTTSH.HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH...........HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHH CS
  CTP_transf_1   2 qRvitalvlilivliilllgglvflllvavvvilalkElirlvrlkkrekrllll........llslvlllllllflylesliallklvlllvlvll 90 
                   +R+++++++i+ ++++ll+g++++++lv+++++l+++E+++l +lk++++    +        +l+++++ ++++fly+es+i ++k+v+++ + l+
    CDO69135.1 223 TRTLWTFIMIGGFITLLLMGHVYMIMLVMLCQTLVYREVTALFSLKRKDVGEGNArgrdpwskTLNWYFFAVTNYFLYGESIIYYFKHVVFSNAQLT 319
                   7*******************************************999887543333333444*********************************99 PP

                   HHH---...HHHHHHHHHHHHHHHHHTHHHH............................TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-- CS
  CTP_transf_1  91 llvlkvlkskskklervilallallyvvlll...........................qslllienikeglllvllllalvvaaDigaYffGklfGk 160
                    +++          +r+++++l+l+++v ++                           +s+++++ni egl+++ ++ +lv+++D++aY++G+++G+
    CDO69135.1 320 PFAT---------NHRFVSFTLYLIGFVGFVlslkrgylkqqfglfcwvhmtlllivvSSHFIVNNILEGLIWFWVPASLVICNDVFAYVWGITIGR 407
                   9998.........588888888888888777788*************************************************************** PP

                   -B-S-TTS---BHHHHHHHHHHHHHHHHHHHHHHHCTS......................................................---TT CS
  CTP_transf_1 161 tkllpkiSPkKTveGfigGlvaavvvglllalvlskal......................................................alsll 203
                   t +l+ +SPkKTveGf+g++++++++gll  ++++++                                                       a+ ++
    CDO69135.1 408 T-PLIALSPKKTVEGFVGAFFSTIIFGLLWGTYFMRFDymicpmrdlgvtawsgqlhctpnpvfvwrdwqmpaplsvffstllghqvttipyAPYQF 503
                   *.********************************99879********************************************************** PP

                   SHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 204 hllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylllel 265
                   hll+ls ++slva+fG++++Sg+KRaf iKD+G++iPGhGG++DR+D+++++++++y+++++
    CDO69135.1 504 HLLVLSCFASLVAPFGGFFASGFKRAFDIKDFGHSIPGHGGMTDRMDCQFLMGVFTYVYYSS 565
                   ***********************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1414  (0.0788666); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4172.46
//
Query:       CDO69136.1  [L=880]
Description: hypothetical protein BN946_scf185042.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-98  327.1   0.7    4.2e-98  327.1   0.7    3.7  3  Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fra
    3.7e-80  268.5  10.7    9.9e-56  188.6   0.9    3.3  3  Topoisom_I    Eukaryotic DNA topoisomerase I, catalytic core
    4.6e-38  129.0   2.4    1.4e-37  127.4   0.6    2.7  2  Topo_C_assoc  C-terminal topoisomerase domain
  ------ inclusion threshold ------
        0.3   10.0   3.2       0.64    8.9   2.5    1.8  2  STIL_N        SCL-interrupting locus protein N-terminus
        6.3    7.3  10.9        2.7    8.5   6.9    2.5  2  DUF2115       Uncharacterized protein conserved in archaea (D


Domain annotation for each model (and alignments):
>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   8.1      0.66   2.4e+03      95     124 ..     235     264 ..     228     272 .. 0.77
   2 !  327.1   0.7  1.2e-101   4.2e-98       1     213 []     276     493 ..     276     493 .. 0.98
   3 ?   -7.9  10.7         5   1.8e+04     101     150 ..     740     789 ..     695     823 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.66
                   HHHHHHTT-----HHHHHHHHHHHHHHHHE CS
  Topoisom_I_N  95 kekekkkaltkeekkklkeekekleekygy 124
                   ++ke+k + +k+  kk+kee+e++e++y++
    CDO69136.1 235 AKKEDKDEDAKKAAKKKKEEEEEEEATYKW 264
                   467777777788888888888888888887 PP

  == domain 2  score: 327.1 bits;  conditional E-value: 1.2e-101
                   ---S-EE----B---------TT--EEETTEEE---HHHHHHHHHHHHTTTSSGGG-HHHHHHHHHHHHHHHHHTT-.....---GGGEE-HHHHHH CS
  Topoisom_I_N   1 vkWktLehnGvlfppeYeplpknvklkydgkpvkLspeaEEvatfyaamletdyakkevFqknffkdfkkvlkekek.....ikelekcdFskikey 92 
                   +kW tLehnGv+fpp+Yeplpk+vk+ky+g+pv+L+pe+EEva+fyaa+l + +a+++vF+knff+df kvlk++       i+++e cdF++++ey
    CDO69136.1 276 MKWMTLEHNGVYFPPPYEPLPKHVKMKYNGEPVDLPPESEEVAGFYAALLGSPHAQDAVFNKNFFDDFLKVLKKNPPrndikITKFELCDFRPMYEY 372
                   69**********************************************************************88776677779************** PP

                   HHHHHHHHTT-----HHHHHHHHHHHHHHHHEEEETTEEEEEE--B----EE----TT-TTTT-EE----GGG-EEE--SSS-----STT---SEEE CS
  Topoisom_I_N  93 lekekekkkaltkeekkklkeekekleekygyalldgrkekvgnfrvepPgLfrgrGehpktGklkkrvlpedvtiNigkdakvPeppaghkWkevv 189
                   +e+ekekkk++t++ekk++k++k++le++y++++ldgrkekvgnfr+epPgLfrgrG+hpk+G lk rv+pedvtiNigkda+vP+p+   +Wkevv
    CDO69136.1 373 FEAEKEKKKSMTAAEKKAAKAAKDELEAPYAFCYLDGRKEKVGNFRIEPPGLFRGRGDHPKKGALKLRVRPEDVTINIGKDAPVPKPNVPGNWKEVV 469
                   ************************************************************************************************* PP

                   --TT---SEEEE-TTT--EEEEEE CS
  Topoisom_I_N 190 hdntvtwlaswkeningqvkyvmL 213
                   hdntvtwla w en+ng++kyv+L
    CDO69136.1 470 HDNTVTWLANWVENVNGNYKYVFL 493
                   **********************98 PP

  == domain 3  score: -7.9 bits;  conditional E-value: 5
                   TT-----HHHHHHHHHHHHHHHHEEEET.TEEEEEE--B----EE----TT CS
  Topoisom_I_N 101 kaltkeekkklkeekekleekygyalld.grkekvgnfrvepPgLfrgrGe 150
                   k  +k+ekk +k ++ekle++ +    d   k+k+ +++ e   L + rG+
    CDO69136.1 740 KDIEKAEKKFQK-DNEKLEAEGKKSQDDsVLKDKIKEIEAEYKRLKKERGT 789
                   223333333222.22223333232222212244444444444444444443 PP

>> Topoisom_I  Eukaryotic DNA topoisomerase I, catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   3.1   2.9e-30   1.1e-26       2      69 ..     497     564 ..     496     566 .. 0.98
   2 !  188.6   0.9   2.8e-59   9.9e-56      88     230 ..     564     703 ..     563     705 .. 0.97
   3 ?   -2.9   1.6      0.89   3.2e+03      10      37 ..     760     786 ..     744     800 .. 0.68

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 2.9e-30
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH---------TTS--- CS
  Topoisom_I   2 sklkgekdfkKYekarkLkkvvekiredykkklkskeilekqlatavylidklaLrvGnekeeeeadt 69 
                 s+lkg++d++K+ekar+Lkk+v++ir+dy+++lk+k+++e+q+ata+y+idklaLr+Gnek e+eadt
  CDO69136.1 497 SSLKGQSDMQKFEKARELKKHVDTIRADYNRDLKNKQMMERQRATAMYFIDKLALRAGNEKGEDEADT 564
                 899****************************************************************9 PP

  == domain 2  score: 188.6 bits;  conditional E-value: 2.8e-59
                 EEEEEEE-GGG-EEEEEEE--HHHHHHHHHHHTT--TTSBTTTT--HHHHHHHHTTTSTT--TTHHHHHHHHHHHHHHHHH..--------TTHHHHHH CS
  Topoisom_I  88 titldFlGKdsiryfntvkvdkqvyknlkifckkkkkgeevFdkintsklNkyLkelmegLsAKvFRTYnASitlqeqLkklekievdesnvaekikay 186
                 t+ +dFlGKdsiry+n+v+v++qvykn++if+++k++g+e+Fd++nt  lNk+L ++m+gL+AKvFRT+nAS t+q+ L++    ++++++v+ek++ay
  CDO69136.1 564 TLVFDFLGKDSIRYYNEVQVEDQVYKNIRIFKDNKDDGDELFDRVNTGALNKHLASYMKGLTAKVFRTFNASLTFQDLLDRG---TPEKGTVQEKLNAY 659
                 688******************************************************************************6...7999********** PP

                 HHHHHHHHHHHT-EE-XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Topoisom_I 187 neAnreVAilcnhqrsvpkqheksmeklkkkiealkedikelkk 230
                 n+Anr VAilcnhqr+vpk+he+sm+k+++k++ lk++ ++l++
  CDO69136.1 660 NHANRMVAILCNHQRAVPKSHEQSMSKMREKLRGLKYERMKLRH 703
                 *************************************9998876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHHHHHHHHHHHHHHTT-S CS
  Topoisom_I  10 fkKYekarkLkkvvekiredykkklksk 37 
                  kK +    Lk+++++i ++yk+ lk++
  CDO69136.1 760 GKKSQDDSVLKDKIKEIEAEYKR-LKKE 786
                 45555566688888888888874.4443 PP

>> Topo_C_assoc  C-terminal topoisomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.35   1.3e+03      14      28 ..     139     153 ..     137     158 .. 0.88
   2 !  127.4   0.6   3.9e-41   1.4e-37       1      70 []     811     880 .]     811     880 .] 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.35
  Topo_C_assoc  14 keenkevaLgtSkin 28 
                   k ++k+va g++k n
    CDO69136.1 139 KPKTKTVANGKAKAN 153
                   7789*********98 PP

  == domain 2  score: 127.4 bits;  conditional E-value: 3.9e-41
  Topo_C_assoc   1 kekikklklqlkdkeenkevaLgtSkinYlDPRitvawckkhdvpiekiFsktlleKfaWAmevdedfkf 70 
                   +ekik++klq++d+e++kevaL+tSkinYlDPRitvawck hdvp+ek+Fsktll+Kf+WAmevd+d+kf
    CDO69136.1 811 DEKIKTFKLQMEDREAGKEVALSTSKINYLDPRITVAWCKAHDVPVEKLFSKTLLTKFPWAMEVDPDWKF 880
                   69******************************************************************99 PP

>> STIL_N  SCL-interrupting locus protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.5   0.00018      0.64     312     385 ..     115     189 ..     101     194 .. 0.81
   2 ?   -1.9   0.0      0.34   1.2e+03     301     353 ..     571     623 ..     557     658 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX--S----SS---XXXX CS
      STIL_N 312 epsdkkplqfeLssesqnaeaelfkevvkslsiks.ssesaspanklsvsdhdsgveDedlsPrpsPsPhpvsqq 385
                 + s k ++  + ++++++ +a l k  +k +++ + +++  +p++k+   d d  +e ed +Prp+ + h   ++
  CDO69136.1 115 SRSSKAVVVSDDNTDDDDDDAPLMKPKTKTVANGKaKANGRPPKKKMKQEDSDPDIESEDETPRPTKKAHSRGKR 189
                 5567777777888888999999999888888776636666777***************************98765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.34
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      STIL_N 301 sketlklfknvepsdkkplqfeLssesqnaeaelfkevvkslsiksssesasp 353
                  k++++ +++v++ d+   ++ + +++++   elf++v + + +k+ ++ ++ 
  CDO69136.1 571 GKDSIRYYNEVQVEDQVYKNIRIFKDNKDDGDELFDRVNTGALNKHLASYMKG 623
                 47889999999999999999999999999999****99998888876665555 PP

>> DUF2115  Uncharacterized protein conserved in archaea (DUF2115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.1   1.1e+04      77      96 ..     512     531 ..     493     546 .. 0.49
   2 ?    8.5   6.9   0.00076       2.7       8      96 ..     729     820 ..     724     834 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
     DUF2115  77 eelkeflemleeqceeekee 96 
                  elk+ ++++++ ++++ ++
  CDO69136.1 512 RELKKHVDTIRADYNRDLKN 531
                 33444444444333333332 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00076
     DUF2115   8 ilkkeaskisieDlmkisarlekeikklpekyrkelseslte....ylfeaykelknkrsgdkseykeevideeelkeflemleeqceeekee 96 
                 +++++ ++++ +D++k++++++k+ +kl+++ +k+  +s+ +     +  +yk+lk++r ++k + k +   +e+++e++++l+e++++ k +
  CDO69136.1 729 AIASHEETMKAKDIEKAEKKFQKDNEKLEAEGKKSQDDSVLKdkikEIEAEYKRLKKERGTEKHTLK-KERPTEKIEEAIDKLDEKIKTFKLQ 820
                 688899999********************99999887777651111566689999996666666665.67889999**999999988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2259  (0.125997); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.52
# Mc/sec: 5045.96
//
Query:       CDO69137.1  [L=124]
Description: hypothetical protein BN946_scf185042.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-20   71.5   0.4    5.8e-20   71.1   0.4    1.2  1  NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
  ------ inclusion threshold ------
        5.5    7.3   5.5         52    4.1   5.4    2.3  1  ESSS      ESSS subunit of NADH:ubiquinone oxidoreductase (com


Domain annotation for each model (and alignments):
>> NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.4   6.5e-24   5.8e-20       1      54 [.      72     124 .]      72     124 .] 0.95

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 6.5e-24
    NDUF_B12   1 kDPWlRnEaWRykgqfskakrfkraffpGfglavaafaaavgyEhflgskkhhh 54 
                 +DPW+++EaWR+++ fs++++f +af pGfg+a++af+ +v++E+++ + k+ h
  CDO69137.1  72 RDPWAKREAWRKHPVFSRRAMFSKAF-PGFGVALVAFTTYVVVENLITKGKDSH 124
                 8*************************.*******************98777665 PP

>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.4    0.0058        52      40      71 ..      81     112 ..      27     117 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0058
        ESSS  40 fdkdpvedkenmeavfffgvsivlVlgsvfva 71 
                 + k+pv  +++m    f g+ ++lV+++++v+
  CDO69137.1  81 WRKHPVFSRRAMFSKAFPGFGVALVAFTTYVV 112
                 344588899999999999*********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 834.80
//
Query:       CDO69138.1  [L=1149]
Description: hypothetical protein BN946_scf185042.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-80  271.0   0.1    2.5e-80  270.0   0.1    1.4  1  PALP            Pyridoxal-phosphate dependent enzyme
      4e-44  148.3   0.0    2.3e-25   88.2   0.0    2.6  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh
    8.5e-09   35.2  10.3    1.5e-08   34.4  10.3    1.4  1  PHD             PHD-finger
  ------ inclusion threshold ------
        0.3   10.7   1.8       0.53    9.9   1.8    1.3  1  DUF4559         Domain of unknown function (DUF4559)
       0.87    9.7   3.5        1.8    8.7   3.5    1.5  1  zf-CW           CW-type Zinc Finger


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0   0.1   6.9e-84   2.5e-80       6     294 .]     657     949 ..     653     949 .. 0.97

  Alignments for each domain:
  == domain 1  score: 270.0 bits;  conditional E-value: 6.9e-84
                 SS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EE CS
        PALP   6 gpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaev 104
                 ++TPlv +p+ls++lg +++lK+E+l+   SfK+Rga++ +a+l  +++ k+vv++s+GNh++++A+ +++lG+++tiv+p+ +++ kv+   +lGa+v
  CDO69138.1 657 KETPLVYCPNLSARLGNQIWLKREDLQEVFSFKIRGAYNFMASLSDEERWKGVVTCSAGNHAQGVALSGSRLGIPCTIVMPKATPSIKVRNVSRLGAKV 755
                 68*****************************************88888*************************************************** PP

                 EEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT..TTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EEEEEEECTTCGGTT CS
        PALP 105 vevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg..gkpdavvvpvGgGgliaGiaaglke.rrpdvrvigvepegsdalar 200
                 v++g+d+dea+  +a+laa  +g ++v+++d+p+vi+g+gt+g Eil+q++  +++d +v++vGgGgl+aGi+ ++k  + p+++vig+e++ +da+ r
  CDO69138.1 756 VLYGQDFDEAKTECARLAAT-YGLIFVPPYDDPLVIAGQGTVGSEILKQIPnaEDLDGIVAGVGGGGLVAGICEYVKRiGSPKTKVIGAETVDADAMDR 853
                 ********************.*********************************************************99999**************** PP

                 CCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH..HHHHHHCCTTCEEEEEEE-B CS
        PALP 201 slragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal..klreagelkegdrvvviltg 294
                 sl++g+rvt+++   + dg av+ ++ + f++++rl+d +v v+++e+++a++   ++++ ++ep++a ala+l    ++ + ++++++ v++++g
  CDO69138.1 854 SLKKGERVTLSEVGLFSDGTAVKIVGQEPFRICQRLLDGVVKVDTDEICAAIKDIFEETRSITEPAGALALAGLkrYIVDNQLVGAQKKFVAVISG 949
                 **************************************************************************9555566666666999999997 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   2.6e-19   9.2e-16       1      90 [.     962    1053 ..     962    1054 .. 0.93
   2 !   88.2   0.0   6.3e-29   2.3e-25       4      91 .]    1061    1147 ..    1059    1147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2.6e-19
                      HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C    1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevs...qaeeldelierleklgykvedlsknellkeh 90  
                      erae+geg+eall+v++pe+pG++    + + +r+  T+f Yr++  ++++++  ++++   +++e  el + lek g+k +d s++e++k+h
      CDO69138.1  962 ERAELGEGREALLSVDIPEKPGSFVALHDVIHPRA-TTEFVYRYHHPERAQIFLSFQLQttnREQEVSELLATLEKGGMKGFDISDDEMAKTH 1053
                      89************************999999999.*********************97332456699**********************998 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 6.3e-29
                      TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C    4 evgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91  
                       v+ ++e+l+ +efpe+p aL++Fl+ l   ++i+lf+Yr++g++ gkvL+g++v+ +   +++ e le+lgy ++++++ne++k++l
      CDO69138.1 1061 CVKVANERLFRFEFPERPDALRRFLKGLHVGWNISLFHYRNHGADIGKVLAGIQVPPKDA-EQFSEYLERLGYPYVEETNNEVYKRYL 1147
                      58899***************************************************8888.************************997 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4  10.3   4.3e-12   1.5e-08       1      51 [.     141     188 ..     141     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4.3e-12
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 rC +C+++ d++e++ qC++Ck w+H  C+++ +   e   ++++Ce+Ck+
  CDO69138.1 141 RC-ICEDEGDQGEFMAQCEECKAWQHGVCMGYADA--ELVPQHYYCEQCKP 188
                 69.****999***********************88..666669******97 PP

>> DUF4559  Domain of unknown function (DUF4559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.8   0.00015      0.53      47      97 ..     139     193 ..     131     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
     DUF4559  47 kekatCnskkqekllr.vckvceeWkkeiksyhkgr...kslirwtnckPnkwpt 97 
                 + ++ C+++ ++ +   +c+ c+ W++ + + + ++    ++ +   ckP  w++
  CDO69138.1 139 VTRCICEDEGDQGEFMaQCEECKAWQHGVCMGYADAelvPQHYYCEQCKPELWTE 193
                 67888988766544445****************9987777888999*******64 PP

>> zf-CW  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.5    0.0005       1.8       2      34 ..     154     187 ..     153     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0005
       zf-CW   2 wVqCdkClKWRr.lptevdkselipekWvCsmnp 34 
                 ++qC++C+ W   +  +    el+p+ ++C++ +
  CDO69138.1 154 MAQCEECKAWQHgVCMGYADAELVPQHYYCEQCK 187
                 68********99877777899999*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7785.79
//
Query:       CDO69139.1  [L=1590]
Description: hypothetical protein BN946_scf185042.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-67  227.3   0.0    1.6e-66  223.6   0.0    2.5  3  Vps8         Golgi CORVET complex core vacuolar protein 8
    0.00015   21.6   0.0      0.039   13.8   0.0    3.3  3  Clathrin     Region in Clathrin and VPS
  ------ inclusion threshold ------
      0.026   14.8   0.0        1.2    9.5   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> Vps8  Golgi CORVET complex core vacuolar protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.95   5.7e+03      78     104 ..      35      60 ..      33      69 .. 0.61
   2 !  223.6   0.0   2.7e-70   1.6e-66       1     198 []     808    1021 ..     808    1021 .. 0.95
   3 ?    0.4   0.0     0.065   3.9e+02      50      73 ..    1292    1315 ..    1261    1318 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.95
        Vps8  78 dDYvtPlvellklirsaeeeeeekeee 104
                 +DY t ++el++  ++ +  + +++e+
  CDO69139.1  35 GDYSTRFEELMSDGEDEQ-PRGRDDED 60 
                 79*********9999922.22222222 PP

  == domain 2  score: 223.6 bits;  conditional E-value: 2.7e-70
        Vps8    1 vFlevLepyilsgklkslppevvkalvehysskgelerleelilhldpksLDldqvlklckehrLydaliYvwnkaldDYvtPlvellklirsa... 94  
                  +Fl++Lep+ l+g+++++pp+++++lv+++++++++e +e+li+h+dp++LD++q+++lc++++LydaliYv+++al+DY++P+vell l+r++   
  CDO69139.1  808 IFLRQLEPFMLNGEIRHVPPRITQRLVALHDEDNRPELVERLIWHIDPDCLDVNQAITLCQRYHLYDALIYVYTRALQDYKSPVVELLGLLRRVrqw 904 
                  7********************************************************************************************9777 PP

        Vps8   95 ...e.......eeeeekeeeeeeeeeaykvfeYlsyiLtGraYPsgeeleeeeaskakseiyslLfsgksiewpkgsgk...lltkeeseeepafPy 178 
                     +       ++ +++++ e    +ayk++++++ +LtG++YPs+e+l+e+ea kak+++y +Lfsg+s  wp+g+g    l+++ee+  ep++Py
  CDO69139.1  905 rrqRaeasptsSTFADEQAIEPVILNAYKIYPFIADTLTGLTYPSEEPLPEDEAFKAKKAVYAFLFSGRSSVWPEGEGGklvLTSDEENGIEPTYPY 1001
                  6650556666677788899999*******************************************************9558899999999******* PP

        Vps8  179 lrlLLkfdaeeflsvLneaF 198 
                  +rlLL+fd e+fl++L++aF
  CDO69139.1 1002 IRLLLRFDPEAFLHTLDLAF 1021
                  *******************9 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.065
        Vps8   50 sLDldqvlklckehrLydaliYvw 73  
                    D d ++++c+e++ +da++++ 
  CDO69139.1 1292 YVDGDEAVRICEENEVFDAVVWLV 1315
                  6799***************99875 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.4e-06     0.039      55     100 ..     840     888 ..     812     906 .. 0.83
   2 ?    0.7   0.0     0.074   4.4e+02      61     116 ..    1104    1160 ..    1080    1176 .. 0.73
   3 ?    2.2   0.0     0.025   1.5e+02      47     104 ..    1268    1326 ..    1258    1356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-06
                 TT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHT.TXTHS CS
    Clathrin  55 yddpqeleeflk..knnnydlekvaklcekadlyeeavilykk.inefk 100
                 +++p+ +e+ +     ++ d+++++ lc+ ++ly+ ++++y++ ++++k
  CDO69139.1 840 DNRPELVERLIWhiDPDCLDVNQAITLCQRYHLYDALIYVYTRaLQDYK 888
                 5566666666665567889***********************9777776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.074
                  HHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSX.SSSSHCSCHHH CS
    Clathrin   61 leeflkknnnydlekvaklcekadlyeeavilykkinefkkaisl.lkklkdfddai 116 
                  +e+ l+++n    ++++kl + a+ y+ ++  y+  +++ +++++ l+++++  +++
  CDO69139.1 1104 AESLLSTYNPHESDRILKLFRRAGFYRILRSWYRQEKQWPQLLDTfLQDPDLSSHEV 1160
                  455666666677788888888888888888888888888888887677766666665 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.025
                  HHHHHHHHTT-HHHHHHTTSS---..S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSS CS
    Clathrin   47 allelyakyddpqeleeflkknnn..ydlekvaklcekadlyeeavilykkinefkkais 104 
                  a++ + ++ d+ + + + l+++    +d +++ ++ce+++ ++  v l ++ ++ k a+s
  CDO69139.1 1268 AYVAMHCRFDP-SGVIPALRSLPRdyVDGDEAVRICEENEVFDAVVWLVDREGDPKGALS 1326
                  66777777785.888888886655559***************999999999998888776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0002       1.2       9      71 ..     282     347 ..     279     362 .. 0.74
   2 ?   -1.2   0.0      0.45   2.7e+03      19      44 ..     553     578 ..     547     627 .. 0.69
   3 ?    0.6   0.0      0.12   7.2e+02      27      70 ..     831     875 ..     819     889 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0002
  ANAPC4_WD40   9 LiAlatedgellvfRlng..qrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  L+ ++t++g ++vf ++   + v +  + +k+ + v++La + d +  av+++ g ++l+d  s k
   CDO69139.1 282 LVCIGTDTGLVVVFDFKQtlKCVCGNeSLEKNFGAVTALALSFDHTYVAVGHATGYIQLYDLRSPK 347
                  56666666666666543322344444555677899**************************98765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.45
  ANAPC4_WD40  19 llvfRlngqrvwtleedkedsevrsL 44 
                  l + R++  +v ++ +d++ ++v+++
   CDO69139.1 553 LSLLRVSEDKVTQTVKDAKTGKVSKV 578
                  56667777777777555555555543 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.12
  ANAPC4_WD40  27 qrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  qr++ l +ed++ + v+ L W+ d   L v  + + ++ ++ +++
   CDO69139.1 831 QRLVALhDEDNRPELVERLIWHIDPDCLDVNQAITLCQRYHLYDA 875
                  454555588999999*********999999888777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.52
# Mc/sec: 9185.52
//
Query:       CDO69140.1  [L=909]
Description: hypothetical protein BN946_scf185042.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-30  106.3   1.3    3.3e-30  105.1   0.1    2.3  2  DUF3510       Domain of unknown function (DUF3510)
    7.1e-27   94.1   1.7    2.7e-26   92.2   1.7    2.1  1  COG2          COG (conserved oligomeric Golgi) complex compon
     0.0017   16.6   1.2     0.0039   15.3   1.2    1.5  1  PEPcase       Phosphoenolpyruvate carboxylase
      0.006   15.5   1.9      0.012   14.5   1.9    1.4  1  Spc7          Spc7 kinetochore protein
     0.0076   16.3   0.4       0.03   14.4   0.4    2.1  1  Vps51         Vps51/Vps67
  ------ inclusion threshold ------
      0.026   13.1   2.9      0.053   12.1   0.7    2.0  2  Zw10          Centromere/kinetochore Zw10
      0.092   12.8   0.3        1.6    8.8   0.1    2.5  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> DUF3510  Domain of unknown function (DUF3510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       1.4   3.6e+03      49      92 ..     148     191 ..     129     219 .. 0.66
   2 !  105.1   0.1   1.3e-33   3.3e-30       1     126 []     739     871 ..     739     871 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
     DUF3510  49 esekklseevleewlaevleevtsrYletisevlssvkkteesL 92 
                 ++ +++++e+ e++ ++++ +  +++l+ + ++ +s+++ e+ L
  CDO69140.1 148 STLQQIQDETKEKLDRRAVIREEKAFLHSLLKISESITRLESLL 191
                 33344777777777777777777777777766767776666655 PP

  == domain 2  score: 105.1 bits;  conditional E-value: 1.3e-33
     DUF3510   1 qeltercceaLkqvssiprlyRrtn..kevptepSkyvseilkplktf.....kkesekk.lseevleewlaevleevtsrYletisevlssvkktees 91 
                 q+l++r+c+aL +++sip+++R+++  k++ptepS++vs i+k +k+f     + +  ++ l+ee+l+ +++ev++ vt+rY+     +l+ +kktees
  CDO69140.1 739 QILSRRACDALLSMRSIPSQFRAMSssKKMPTEPSYFVSLIFKHTKAFfaiqsV-DGPGSaLKEEYLKPVAEEVFDIVTERYIY----FLTAMKKTEES 832
                 5799*******************9999********************7799853.444556***********************....*********** PP

     DUF3510  92 Lkrlkkarkgaaas....anggeeasDddkirlQlalDV 126
                 L++lkk+r++a +     a+++++  D++kir+Q++lDV
  CDO69140.1 833 LRKLKKGRRSAYSLfgssAREDDGRADEEKIRAQMILDV 871
                 *********9996699997788899*************8 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   1.7   1.1e-29   2.7e-26       4     133 .]      63     191 ..      60     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 1.1e-29
        COG2   4 deheFgvpdFdpdqFvselrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeevesk 102
                 d   + +++Fd++qF+ + r++ +L +lr +L++yl+ l++el++l+n+dy+ F+slS+ L+g  ++le ++ pla ++ kv + r+ l++ + e ++k
  CDO69140.1  63 DDPYLSAETFDVEQFLLS-RTYTSLPDLRTELRDYLAALKEELVKLINDDYEAFISLSTDLRGEGTRLESLRRPLADLKAKVLESRSTLQQIQDETKEK 160
                 55566789*******988.******************************************************************************** PP

        COG2 103 leeakeleekrellklllkldevvekleall 133
                 l+ ++ ++e++++l +llk++e + +le+ll
  CDO69140.1 161 LDRRAVIREEKAFLHSLLKISESITRLESLL 191
                 ****************************985 PP

>> PEPcase  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.2   1.5e-06    0.0039     146     259 ..      76     188 ..      68     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHHHH---....----HHHHHTT-SSS...............TTSHHHHHHHHHHHHHHHHHHHHHHHHHT-.-----TT---SHHH CS
     PEPcase 146 elalekylkeveeLieeLslslelvevseellesleedkekleevyeel.aerykeepYRlklaelrkrLentrerleelaekeeeeleeeeayesaee 243
                 + +l+++++++ +L++eL     l+  +eel +++++d e++ + +++l  e ++ e  R+ la l++++ ++r++l++ +++++e+l++++ ++++++
  CDO69140.1  76 QFLLSRTYTSLPDLRTELRD--YLAALKEELVKLINDDYEAFISLSTDLrGEGTRLESLRRPLADLKAKVLESRSTLQQIQDETKEKLDRRAVIREEKA 172
                 55677888889999999987..89999*****************99999678899******************************************** PP

                 HHHHHHHHHHHHHHTT CS
     PEPcase 244 lledLelikesLketg 259
                 +l+ L  i+es+++ +
  CDO69140.1 173 FLHSLLKISESITRLE 188
                 ***********98766 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.9   4.7e-06     0.012     156     254 ..      77     182 ..      68     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-06
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqe.aaeeles......idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksele 247
                  lL++    l +l  el+ + a+l+eel kl +  +e + s       + ++Le+lr+ la+lka++ e +  l++ q++ +e+ ++ + ++e+k+ l+
  CDO69140.1  77 FLLSRTYTSLPDLRTELRDYLAALKEELVKLINdDYEAFISlstdlrGEGTRLESLRRPLADLKAKVLESRSTLQQIQDETKEKLDRRAVIREEKAFLH 175
                 567888888999999****************996333333345455456899*********************************99999999998777 PP

        Spc7 248 eeiaeae 254
                 + ++ +e
  CDO69140.1 176 SLLKISE 182
                 7666555 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.4   1.2e-05      0.03       2      80 ..      68     142 ..      67     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
       Vps51   2 dspdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqa 80 
                 +++ fd+e+++     ++t   l  ++ +l+    al++el  l+ d Y+ +is s ++r   + +++l+  l +lk+ 
  CDO69140.1  68 SAETFDVEQFLL----SRTYTSLPDLRTELRDYLAALKEELVKLINDDYEAFISLSTDLRGEGTRLESLRRPLADLKAK 142
                 678999999999....9999**************************************999888888888888887765 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   2.1e-05     0.053      18     163 ..      92     243 ..      80     278 .. 0.75
   2 ?    0.4   0.1     0.071   1.8e+02      24      56 ..     805     837 ..     799     842 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
        Zw10  18 klekkveeikeevskmivkkYseflelsssaeellerveslskeidalkkkven..eieqdlkaaveelaelkqqlkekev....vlellealkkieea 110
                 +l   +  +kee+ k i++ Y+ f+ ls+      +r+esl +   +lk kv +  + +q++++ ++e  +    ++e+++    +l+++e++  +e++
  CDO69140.1  92 ELRDYLAALKEELVKLINDDYEAFISLSTDLRGEGTRLESLRRPLADLKAKVLEsrSTLQQIQDETKEKLDRRAVIREEKAflhsLLKISESITRLESL 190
                 455556789****************************************99965468899999999998888888888775111155677777777777 PP

        Zw10 111 leelkealknkaflvaadlleelkslldlekvekafqlkilkalrkelsvlse 163
                 l +     ++k+  +  +     ++ +d+ +  +    k ++ +++e++ l +
  CDO69140.1 191 LLISSPDEEEKDTSAMGATQYASRTDVDTDERSRGNRAKHIARVAAEYTQLLY 243
                 77776666677655555555555555587777777777777778888776655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.071
        Zw10  24 eeikeevskmivkkYseflelsssaeellerve 56 
                 + + eev++ + ++Y  fl+ ++ +ee l +++
  CDO69140.1 805 KPVAEEVFDIVTERYIYFLTAMKKTEESLRKLK 837
                 56789********************99988876 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00061       1.6      44     111 ..      83     153 ..      74     180 .. 0.87
   2 ?    1.2   0.0      0.14   3.6e+02      81     104 ..     717     740 ..     670     743 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00061
  Baculo_PEP_C  44 etqLnalsedlksllaeldtrldtlltnLtdalnalqdtlr...neLtnlnsiltnLlssvtNinstLnnl 111
                    t+L +l ++l++ la+l+++l +l++   +a  +l+++lr   ++L++l   l++L ++v    stL+ +
    CDO69140.1  83 YTSLPDLRTELRDYLAALKEELVKLINDDYEAFISLSTDLRgegTRLESLRRPLADLKAKVLESRSTLQQI 153
                   68899********************************999944457999999*********9999999876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
  Baculo_PEP_C  81 dtlrneLtnlnsiltnLlssvtNi 104
                   d+l+ +L  ++s + +Lls++  i
    CDO69140.1 717 DALQHALSKITSLVPTLLSQIVQI 740
                   788899999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.53
# Mc/sec: 5207.55
//
Query:       CDO69141.1  [L=261]
Description: hypothetical protein BN946_scf185042.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-13   50.7   0.0    3.5e-13   49.6   0.0    1.6  2  Glutaredoxin  Glutaredoxin
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.029   14.8   0.0    1.6  1  GST_N_3       Glutathione S-transferase, N-terminal domain
      0.028   14.7   0.0       0.12   12.6   0.0    2.0  2  GST_N_2       Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   5.9e-17   3.5e-13       2      60 .]     166     229 ..     165     229 .. 0.90
   2 ?   -3.3   0.0       1.9   1.1e+04      14      26 ..     243     255 ..     242     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 5.9e-17
                   EEEESTSSHHHHHHHHHHHHTT....GGEEEEEGCCS.HHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   2 vlftkptCpyCkkakrlLkelg....vkfeeidvdkd.eeireelkelsgvrtvPqvfidgkhv 60 
                   v+f+k++Cpy+++ak lL+++      k+ e++v  d +++++ l +l+g+rtvP+v  +gk +
    CDO69141.1 166 VVFSKTYCPYSQRAKTLLESYHltppPKVVEVNVRSDgPQVQAILARLTGRRTVPNVLLKGKSI 229
                   8*********************65555599999999955**********************976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                   HHHHHHHHTTGGE CS
  Glutaredoxin  14 kakrlLkelgvkf 26 
                   + k+l++++g+ +
    CDO69141.1 243 RLKELFENNGITV 255
                   7899999999875 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.9e-06     0.029       2      65 ..     168     237 ..     167     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.9e-06
                 ES-TTSHHHHHHHHHHHHHT-..-EEEE---TTTTHHHHHHH-....TT--SSEEETTS-EEESHHHHHH CS
     GST_N_3   2 ygfpaSpyarrvrlaLnekgl..pvevvevtpgehdeellakn....plgkvPvLeddgealtdSlaIid 65 
                 ++ +++py++r++ +L+  +l  p +vvev++ +  ++++a+     ++++vP     g+++ +S+++ +
  CDO69141.1 168 FSKTYCPYSQRAKTLLESYHLtpPPKVVEVNVRSDGPQVQAILarltGRRTVPNVLLKGKSIGGSDELHQ 237
                 56789****************87788888887776555555544447******************98765 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.29   1.7e+03      36      48 ..     122     134 ..      35     134 .. 0.69
   2 ?   12.6   0.0   2.1e-05      0.12       1      66 [.     172     238 ..     172     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
                 HHHHHCTTTSSSE CS
     GST_N_2  36 efprlnprgtVPv 48 
                  + r+ ++g+VPv
  CDO69141.1 122 GLIRVEGLGSVPV 134
                 3466677778886 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.1e-05
                 S-HHHHHHHHHHHHCT-..-EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkgl..ediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlry 66 
                 +CP+++R+  +l+   l  + ++ +v  + +g +  + + rl++r tVP   + +g+ i  S e+ ++
  CDO69141.1 172 YCPYSQRAKTLLESYHLtpPPKVVEVNVRSDGPQVQAILARLTGRRTVPNVLL-KGKSIGGSDELHQM 238
                 5****************6545566666666777777789**********9997.67888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1772.47
//
Query:       CDO69142.1  [L=148]
Description: hypothetical protein BN946_scf185042.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-14   51.6   0.2    8.4e-14   51.0   0.2    1.3  1  Cupin_2          Cupin domain
      2e-05   24.2   0.0    5.4e-05   22.8   0.0    1.7  1  Cupin_3          Protein of unknown function (DUF861)
     0.0007   19.2   0.1    0.00091   18.9   0.1    1.2  1  Cupin_1          Cupin
     0.0058   16.8   0.0      0.008   16.4   0.0    1.4  1  ARD              ARD/ARD' family
     0.0069   16.1   0.0     0.0076   16.0   0.0    1.1  1  Cupin_6          Cupin
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.034   14.0   0.0    1.2  1  MannoseP_isomer  Mannose-6-phosphate isomerase
      0.028   14.3   0.1      0.044   13.7   0.1    1.4  1  AraC_binding     AraC-like ligand binding domain
      0.057   13.8   0.0       0.09   13.2   0.0    1.3  1  JmjC             JmjC domain, hydroxylase
       0.18   11.9   0.1       0.29   11.2   0.1    1.4  1  HERV-K_REC       Rec (regulator of expression encoded by corf


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   4.2e-17   8.4e-14       2      71 .]      44     113 ..      43     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 4.2e-17
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHrfrNtgdeparllvvy 71 
                 ++++p G+++++++H+   + ++ l+G+g  +  + ++ e+++Gd+v++pagt H+f+N g +p+ +  +y
  CDO69142.1  44 IMTVPVGGEIGQETHTVD-QHLFFLSGKGQAIqDGTQTNEIHPGDLVIVPAGTLHNFKNLGPTPLIVATIY 113
                 79***************8.**********99955677***************************9987765 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.7e-08   5.4e-05      20      60 ..      55      95 ..      24     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.7e-08
                EECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 20 rltyeedEfcyileGevkvtpeggetvelraGDlvvlpkgl 60
                + t + d++ ++l+G+ +   +g +t e+ +GDlv +p+g+
  CDO69142.1 55 QETHTVDQHLFFLSGKGQAIQDGTQTNEIHPGDLVIVPAGT 95
                5677789999*****************************97 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.6e-07   0.00091      62     120 ..      68     120 ..      35     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.6e-07
                 ESEEEEEEEETTSS.EEEEEE..EETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT- CS
     Cupin_1  62 qGegrvgfvvpgngnrdfhkk..lreGdvfvvPaglvhfqynsgdepavaivvfdtnnpgn 120
                  G+g    ++     +d +++  +++Gd+++vPag  h ++n g +p+ +  ++  + ++ 
  CDO69142.1  68 SGKGQ---AI-----QDGTQTneIHPGDLVIVPAGTLHNFKNLGPTPLIVATIYAPAEHKA 120
                 44444...22.....33344444*********************88877766665555544 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     4e-06     0.008     118     145 ..      82     110 ..      54     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4e-06
         ARD 118 lvekGDLivlPagiyhrFt.ltednkvka 145
                  +++GDL+++Pag+ h F  l++ + ++a
  CDO69142.1  82 EIHPGDLVIVPAGTLHNFKnLGPTPLIVA 110
                 5789**************52667666665 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.8e-06    0.0076      37      96 ..      64     121 ..      26     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.8e-06
     Cupin_6  37 hvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplaviealgeasglge 96 
                 ++ l+G+   i+++ +++ ++++gd+v++p g+ h +  + g++pl v++ +++a++  +
  CDO69142.1  64 LFFLSGKGQAIQDG-TQTNEIHPGDLVIVPAGTLHNF-KNLGPTPLIVATIYAPAEHKAD 121
                 45678888888444.6889******************.8888888877755544444333 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05     0.034      67     135 ..      44     112 ..      29     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
  MannoseP_isomer  67 ritvkPgeklslqkhhhraehWvvvkGtak.vtvddevlllkenestyiplgaihrlenpGkipleliev 135
                      ++tv  g ++  + h    +h   ++G  + ++ + ++ +++  + + +p+g++h ++n G +pl +  +
       CDO69142.1  44 IMTVPVGGEIGQETH-TVDQHLFFLSGKGQaIQDGTQTNEIHPGDLVIVPAGTLHNFKNLGPTPLIVATI 112
                      555555555554444.456899999998762677788999************************988766 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.2e-05     0.044      30      76 ..      67     114 ..      53     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
                   EEE-EEE.EETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE CS
  AraC_binding  30 teGtgrl.rlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyf 76 
                   ++G+g+  + + +t +++pGdl+++p g++H +   +  ++   ++y 
    CDO69142.1  67 LSGKGQAiQDGTQTNEIHPGDLVIVPAGTLHNFKNLGPTPLIVATIYA 114
                   5677776677778899***************99877766665555555 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.5e-05      0.09      84     107 ..      82     105 ..      53     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
                 EE-TT-EEEE-TT-EEEEEESSSE CS
        JmjC  84 vqkpgefVfvfpgayHsvfnlgfn 107
                 + +pg++V+v++g+ H   nlg +
  CDO69142.1  82 EIHPGDLVIVPAGTLHNFKNLGPT 105
                 559**************9999976 PP

>> HERV-K_REC  Rec (regulator of expression encoded by corf) of HERV-K-113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014      0.29       3      36 ..     114     148 .]     112     148 .] 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  HERV-K_REC   3 aplthkmnkmvtseeq.mklpstkkaepptwaqlk 36 
                 ap  hk + +  s eq  kl    k epp+wa+ k
  CDO69142.1 114 APAEHKADTVHDSLEQgEKLEEEGKDEPPSWAKAK 148
                 8999******999888469*************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1050.47
//
Query:       CDO69143.1  [L=951]
Description: hypothetical protein BN946_scf185042.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-37  127.6   0.1    8.8e-37  127.0   0.1    1.2  1  Peptidase_S8  Subtilase family
    1.3e-10   42.0   0.1    2.5e-10   41.0   0.1    1.5  1  fn3_5         Fn3-like domain
     0.0076   16.2   0.0      0.024   14.7   0.0    1.9  1  PA            PA domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.1   1.5e-40   8.8e-37      42     285 ..     251     624 ..     123     640 .. 0.86

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 1.5e-40
                   GEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-HH...HHHHHHHHHHHHCT-SEEEE-EESCETTCH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  42 ngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldtsggsmetg.teliraieeaaedkvdvinmslgestslpk 137
                   +g ++++ +++  ++ ng    HGthvAGi++a   +  +++gva++a+i ++++++  g     g + +i+a+ + + d+ d++ mslg+s+ + +
    CDO69143.1 251 AGTNTPQPDPDPLDQCNG----HGTHVAGIIGADPGNPFNISGVAFKASINAYRIFGCTGVV---GdDIIIEALLRGVSDGNDILTMSLGGSDGWTE 340
                   333344444444444444....************7777799***************555554...44899********************7777766 PP

                   HCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES........................................ CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  Peptidase_S8 138 tgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt........................................ 194
                     +s    ++   +   g +v i+aGN+g      + ++  + p+++ n+i+v++ +                                        
    CDO69143.1 341 GMSS----VVSSRIAATGKIVTIAAGNDGA-----KGSWYTSGPGNAINAISVASLDntviplqnatvhgvkhdpityfatfplpvngtlpifttsn 428
                   6665....555555589************3.....44477777****************************************************** PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  Peptidase_S8 195 ................................................................................................. 194
                                                                                                                    
    CDO69143.1 429 dttivddacnplpddtpdlssfvvivkrgtctfvqkltnvaakggkvsliydngsgfsaidvgnftatliqeadgdflvnefasgaqvslsfpqsga 525
                   ************************************************************************************************* PP

                   .......TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT.--HHH..HHHHHHCCS CS
                   .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxx RF
  Peptidase_S8 195 .......tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpk.ltpet..vraallntA 281
                          + g i++f+s+Gp+ d  +kp+i+apGgni+st +     +     +   sGTSmA+P++ag+ All s +    ++     r++ ++tA
    CDO69143.1 526 sfnfpdaSGGLISSFTSYGPTNDFFFKPAIAAPGGNILSTFPVPL-GT-----FAVLSGTSMATPFIAGVSALLFSVKGTtAQV-GkgARSLFETTA 615
                   ************************************988887777.22.....99*********************87753333.14699999***9 PP

                   -EE...... CS
                   xxx.....x RF
  Peptidase_S8 282 qdl.....g 285
                   q +      
    CDO69143.1 616 QRVpsshtD 624
                   877554442 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   4.2e-14   2.5e-10       3     106 ..     658     763 ..     656     769 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 4.2e-14
       fn3_5   3 Lkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike.aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveGfvt 99 
                 L++++++   +t+t+kN ++ a+++k+ + ++ T+l+++  + +  +  +p  ++ a+++f++ ++tv +++++++t+ + +p++++ ++ ++ +Gf++
  CDO69143.1 658 LNDTAHFkSLQTFTVKNAGTSAKSFKIGHIPAGTALTFQPGTIFPADGPVPLSANsASVKFSETSFTVHPGQTQEITAHFAPPTGLDPTTFPVFSGFIE 756
                 78897765789*******************888888765555444444444333359****************************************** PP

       fn3_5 100 lkdsedk 106
                 + ++e++
  CDO69143.1 757 IANAEES 763
                 *999987 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.9e-06     0.024      21      87 ..     444     504 ..     417     506 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.9e-06
          PA  21 gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndgelgaatgasgnegepdgitiPavgvsredge 87 
                 + d++  +v+v+r   tf++K +n++a+G++  +i+++g+       +  +   d  ++ a++++ +dg+
  CDO69143.1 444 TPDLSSFVVIVKRgtcTFVQKLTNVAAKGGKVSLIYDNGS-------GFSA--IDVGNFTATLIQEADGD 504
                 45788889****9***********************8654.......2233..34488889999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 5310.40
//
Query:       CDO69144.1  [L=614]
Description: hypothetical protein BN946_scf185042.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-21   75.2   0.1    5.6e-20   71.9   0.1    2.1  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
    1.3e-14   54.0   4.5    1.1e-06   28.9   0.4    2.7  2  LRR_4          Leucine Rich repeats (2 copies)
    2.7e-13   49.5   3.2    5.4e-11   42.1   2.5    2.4  2  LRR_8          Leucine rich repeat
    6.5e-05   22.9   2.8         13    6.8   0.1    5.5  4  LRR_1          Leucine Rich Repeat
  ------ inclusion threshold ------
      0.028   14.5   5.8        5.8    7.2   0.3    4.3  4  LRR_6          Leucine Rich repeat


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   1.6e-23   5.6e-20       3     233 .]     245     582 ..     243     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.6e-23
                    EEESTG...........CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH......ECSSSTTSSEEEEEECS CS
                    xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   3 wNvngq...........aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsp......tgggggggnggavlsrf 81 
                    +N++             +s+al++++r+  +++++ +++aD+++LQEvd+ ++++  +  +  + + + + ++      +   +   +g+a++++ 
     CDO69144.1 245 YNILCErcateklygytPSWALQWNYRKELILNEILNHNADIVCLQEVDNAQYEEYFQKTLSEHDYEGVYWPKsrfkmmSESERRLVDGCAIFYKA 340
                    7888888888888888999***********************************998888885555555554456777999999************ PP

                    TEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.............................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................. RF
  Exo_endo_phos  82 pltslfrrtfiefndlvaalrreplaakleqlni.............................................................. 115
                    +  +l+  ++ie+    ++      + +  + +                                                               
     CDO69144.1 341 SKYTLVEKHLIEYSAVAMQRPDFKKTDDMFNRVLgkdhiavvallenketgtrlivsnthlawdphfcdvklvqtallveevekiahnfarypprl 436
                    *****9999999999999999888888877777677777888888888888888888888888888888888888888888888888888888888 PP

                    ..................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH......H.......... CS
                    ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x.......... RF
  Exo_endo_phos 116 ..................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap......v.......... 177
                                      as+r+++++ d  ++               p+iv+GDfN+ p ++++ +l ++   ++++       +          
     CDO69144.1 437 ppssingtsnansagennASSRPPPVYTDGYKI---------------PIIVCGDFNSIPASGVYEFLSNGSIPPDHEDflshtyGkytseglrhr 517
                    888888888888777777777777777777665...............4888***************************66666515666677888 PP

                    ....SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEEECCHHEEC....TSSCSSSB CS
                    ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx....xxxxxxxx RF
  Exo_endo_phos 178 ....glyllgggptptyvtraggsrlDrilasp.alalfrsgvlppplalvrr....ealtlSDH 233
                         +y   g+   t++t+++ + +D+i++++ +l + +++   +p+ l       +a+ +SDH
     CDO69144.1 518 lnlkSAYAGMGELPLTNHTPSFKGAIDYIWYTSsNLSVNSVLGEVDPAYLEKVvgfpNAHFPSDH 582
                    8999999999**********************988888888888777666666***********9 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.4   3.1e-10   1.1e-06       3      40 ..     105     142 ..     103     146 .. 0.89
   2 !   26.1   0.3   2.2e-09   7.9e-06       1      37 [.     149     185 ..     149     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.1e-10
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40 
                 L+ L+L++N l +ip+ ++kl +L+ LdLsgN  +t+++
  CDO69144.1 105 LTALYLNHNALESIPPeISKLSHLELLDLSGN-ALTSIP 142
                 899*************7778************.777774 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 2.2e-09
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37 
                 ++L++L+L++Nqlt++p+ l+ l +L++L + gN +i+
  CDO69144.1 149 TSLKELYLFDNQLTTLPPqLGTLHQLQTLGIEGN-PIE 185
                 79****************9889*********999.543 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   2.5   1.5e-14   5.4e-11       3      61 .]     105     161 ..     103     161 .. 0.97
   2 !   18.6   0.3   3.4e-07    0.0012      24      61 .]     148     184 ..     145     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.5e-14
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 Lt L+L++N l+s+++e  k ls+L+ LdLs N lt++ p  +  L+sL++L+L +N+L
  CDO69144.1 105 LTALYLNHNALESIPPEISK-LSHLELLDLSGNALTSI-PPELGMLTSLKELYLFDNQL 161
                 899*****************.*****************.889999************98 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.4e-07
                 -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 l++Lk+L+L +N+lttl p  +  L++L+ L ++gN++
  CDO69144.1 148 LTSLKELYLFDNQLTTL-PPQLGTLHQLQTLGIEGNPI 184
                 89***************.899***************97 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.034   1.2e+02       2      18 ..     105     121 ..     104     125 .. 0.81
   2 !    6.8   0.1    0.0037        13       1      17 [.     127     143 ..     127     145 .. 0.89
   3 !    5.9   0.1    0.0074        26       1      17 [.     150     166 ..     150     168 .. 0.91
   4 ?    1.4   0.0      0.22     8e+02       1      13 [.     173     185 ..     173     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.034
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L+ L+L++n l+++pp+
  CDO69144.1 105 LTALYLNHNALESIPPE 121
                 889********877775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0037
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L+ LdLs+n l+++pp
  CDO69144.1 127 HLELLDLSGNALTSIPP 143
                 699*********99998 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0074
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L++L+L +n+l+ lpp
  CDO69144.1 150 SLKELYLFDNQLTTLPP 166
                 69**********99998 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.22
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L++L +++np++
  CDO69144.1 173 QLQTLGIEGNPIE 185
                 599********84 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.15   5.4e+02       4      15 ..     104     115 ..     103     117 .. 0.86
   2 ?    7.2   0.3    0.0016       5.8       2      16 ..     125     139 ..     124     140 .. 0.89
   3 ?    4.8   0.1    0.0099        36       3      16 ..     149     162 ..     148     163 .. 0.91
   4 ?    0.1   0.0      0.31   1.1e+03       3      16 ..     172     185 ..     170     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.15
       LRR_6   4 hLteLdLsgNdI 15 
                  Lt+L L++N +
  CDO69144.1 104 FLTALYLNHNAL 115
                 79********87 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0016
       LRR_6   2 nthLteLdLsgNdIg 16 
                  +hL+ LdLsgN ++
  CDO69144.1 125 LSHLELLDLSGNALT 139
                 58**********987 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0099
       LRR_6   3 thLteLdLsgNdIg 16 
                 t+L+eL L +N+++
  CDO69144.1 149 TSLKELYLFDNQLT 162
                 79**********98 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.31
       LRR_6   3 thLteLdLsgNdIg 16 
                 + L++L + gN I 
  CDO69144.1 172 HQLQTLGIEGNPIE 185
                 579********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3677.93
//
Query:       CDO69145.1  [L=402]
Description: hypothetical protein BN946_scf185042.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-71  238.8   0.0    4.6e-71  238.4   0.0    1.1  1  MDD_C           Mevalonate 5-diphosphate decarboxylase C-term
    1.7e-08   34.5   3.6    3.4e-08   33.6   3.6    1.5  1  GHMP_kinases_N  GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> MDD_C  Mevalonate 5-diphosphate decarboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   0.0   5.1e-75   4.6e-71       1     186 [.     195     385 ..     195     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 5.1e-75
       MDD_C   1 vlilvvsdekkkvsStsGmqrsvetSeLlkhrakevvperieelekAikekdFetfaeitmkdSnqlhavcldtyPpifYlndtSraiielvhelNeaa 99 
                 +li+vvsd+kk +sStsGmqr+vetS+Ll+hr+k+vvper++++++Ai ++dF++fa+itm+dSnq+hav+ldt PpifY+nd+Sraii l+ e+N+ a
  CDO69145.1 195 ALICVVSDDKKGTSSTSGMQRTVETSTLLQHRIKHVVPERMRAISEAILARDFDAFARITMQDSNQFHAVALDTDPPIFYMNDVSRAIIALIVEYNRVA 293
                 69**********************************************************************************************865 PP

       MDD_C 100 ....gkikvAYtFDAGpNavlyleekdveellsllkklfppesdaeefvkgakveea.aelseelkaslalkeskgavkriiltkvgdGpkv 186
                     gk+++AYt+DAGpNav+y+ +++++e+++l+ k+fp++++ +  +   + + +  ++ e +++++a++   gavk++i+t+vgdGp++
  CDO69145.1 294 iangGKLRAAYTYDAGPNAVIYAPKENIKEIVELIVKYFPQADAFKDPFGVFDGKGVtGKVVEGFNEAVAKPFGVGAVKNLIHTRVGDGPRT 385
                 555699***********************************998765444433222224689999999999999****************97 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   3.6   3.7e-12   3.4e-08       1      66 []     106     164 ..     106     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 3.7e-12
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvyGg 66 
                     +i +++++P++aGL+SSA+  +alva l+al+       +l  +a rl   ++ + g ++ s++Gg
      CDO69145.1 106 HICSRNNFPTAAGLASSASGFAALVASLAALY-------QLPTDASRLSLIARQGSGSACRSLFGG 164
                     67789***************************.......89********99*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2847.10
//
Query:       CDO69146.1  [L=791]
Description: hypothetical protein BN946_scf185042.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-89  301.2  31.5    1.4e-89  300.8  31.5    1.2  1  Voltage_CLC     Voltage gated chloride channel
    3.7e-12   46.5   1.8    6.3e-06   26.5   0.0    2.9  3  CBS             CBS domain
  ------ inclusion threshold ------
       0.12   12.2   0.7         18    5.2   0.1    3.4  3  Phage_Coat_Gp8  Phage major coat protein, Gp8


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.8  31.5   2.4e-93   1.4e-89       2     353 ..     163     544 ..     162     545 .. 0.91

  Alignments for each domain:
  == domain 1  score: 300.8 bits;  conditional E-value: 2.4e-93
                  HHHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT..--SHHHHH.HHHHHH CS
  Voltage_CLC   2 ggllagllvklvapeaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllkl.srndrdrr.lvaaGa 95 
                  ++++a+ lv+ +a++aagsGi+e+k++++g+  +  l ++++l+k +++ l+++sGls+G+eGp+v++++++g+++++l+k  sr++ ++r +++a  
   CDO69146.1 163 FSFVAAHLVRSLAKYAAGSGISEIKCIIAGFVMKgfLGFWTFLIKSVTLPLVIASGLSVGKEGPSVHVACCIGNLIASLFKRfSRSQGKMReILTASS 260
                  7899*************************************************************************887764555556667****** PP

                  HHHHHHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC  96 AAGiAAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgeepa....fgeveslfalsllelilfvllGilgGllgalfvrlllkve 189
                  AAG+A+aF++P+gGvlf++Ee+s+ fs+++++++f++++va+++l++++ ++      f+ v+   +++++e+i+fv+lG++gGl+ga+ v+ +lkv+
   CDO69146.1 261 AAGVAVAFGSPIGGVLFSIEEMSSVFSIKTMWRSFFCALVATVTLSAMNPYRSGklvlFQ-VTYDRDWHFFEIIFFVILGLFGGLYGAFVVKFNLKVA 357
                  ************************************************777644556666.776669******************************* PP

                  HHHHCHHCHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSC.CHHHHHCTT-S-.............HHHHHH...HHHHHHHHHHHHHCTT-CSBSHH CS
  Voltage_CLC 190 rlfrkleklkikkrlepalvgllvgllglllpasvlgggy.eliasllegstl.............llsllllllllllkllataltlgsgvpgGifa 273
                  +++r++  l  +++le++ ++++++++g++  + +++  + e+++ l+ ++               + ++ +l+l+++ + +++++++g++vp+Gif+
   CDO69146.1 358 EFRRRY--LGNYAILEAVTLAVVTAMIGWFN-H-FMRIDMtESMEILFRECDGasdydhlcqtayqWPMVNSLFLATVGRAALVVISYGCKVPAGIFV 451
                  *99999..5566889***************7.4.67776625566666444336667888888888******************************** PP

                  HHHHHHHHHHHHHHHHHHHH-C............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 274 PsLviGAalGrlvglvlalllp............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  Ps++iGA++Gr++g +++++               ++++ +pg++al+G+aa l+gv+r+++t++vi++Eltg+l+++lp+m++ l+ kav+d
   CDO69146.1 452 PSMAIGATFGRMIGIIVKAINRayptsgifsvcqPDVPCiTPGTYALLGAAAALSGVMRLTVTVVVIMFELTGALTYILPTMIVLLVTKAVGD 544
                  ******************995567788899999989999***************************************************987 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         3   1.8e+04       4      16 ..     483     495 ..     482     498 .. 0.83
   2 !   18.1   0.2   4.6e-07    0.0027       1      51 [.     575     628 ..     575     633 .. 0.88
   3 !   26.5   0.0   1.1e-09   6.3e-06       9      54 ..     701     745 ..     693     747 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3
                 HSBSSCEEEETTS CS
         CBS   4 imtrdvvtvppdt 16 
                 ++ +dv++++p t
  CDO69146.1 483 VCQPDVPCITPGT 495
                 78899*****987 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 4.6e-07
                 HHHHSBSSCEEEETT.SBHHHHHHHHHHHTSSEEEEE..ETTTBEEEEEEHHHH CS
         CBS   1 Vgdimtrdvvtvppd.ttleealelmrekgvsrlPVV..dedgklvGivtlrDl 51 
                 V+ +m+ d+ t+p +  t++++ +++ +++v ++PVV  d++  l+G + ++ +
  CDO69146.1 575 VSRVMRADLKTLPVSgLTVRDIEKILSSTDVKGFPVVsaDGNRTLIGFIDRTEV 628
                 7899***********777********8888*******8777777*****99865 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 1.1e-09
                 CEEEETTSBHHHHHHHHHHHTSS.EEEEEETTTBEEEEEEHHHHHHH CS
         CBS   9 vvtvppdttleealelmrekgvs.rlPVVdedgklvGivtlrDllra 54 
                 ++tv+p+ +le +++l+  k+ + r+  V++ g lvG+vt +D+lr+
  CDO69146.1 701 PLTVSPQLPLEIVMQLF--KRMGpRVILVEDHGALVGLVTVKDVLRF 745
                 57***************..555559956999**************98 PP

>> Phage_Coat_Gp8  Phage major coat protein, Gp8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0031        18      20      40 ..      75      94 ..      72      97 .. 0.74
   2 ?   -2.4   0.0      0.71   4.2e+03      43      49 ..     240     246 ..     230     247 .. 0.79
   3 ?    3.2   0.0     0.012        74      26      41 ..     417     432 ..     414     433 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0031
                    HHHHHHHHHHHHHHHHHHHHH CS
  Phage_Coat_Gp8 20 qAteligyaWavVvvvvvAtl 40
                    q + + g++W vV++v + ++
      CDO69146.1 75 QTVAYAGQSWFVVTLV-GIGI 94
                    66789*****888765.5555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.71
                     HHHHHHH CS
  Phage_Coat_Gp8  43 kLFKKFs 49 
                      LFK+Fs
      CDO69146.1 240 SLFKRFS 246
                     69****7 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.012
                     HHHHHHHHHHHHHHHH CS
  Phage_Coat_Gp8  26 gyaWavVvvvvvAtlg 41 
                      y W++V +   At+g
      CDO69146.1 417 AYQWPMVNSLFLATVG 432
                     599**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4811.22
//
Query:       CDO69147.1  [L=226]
Description: hypothetical protein BN946_scf185042.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0046   16.6   0.0     0.0089   15.7   0.0    1.5  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
       0.13   12.4   3.4       0.22   11.6   3.4    1.4  1  zf-CCHC          Zinc knuckle
       0.15   11.9   3.0       0.26   11.1   3.0    1.4  1  zf-CCHC_4        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06    0.0089      96     137 ..       2      52 ..       1      53 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-06
  Retrotran_gag_2  96 llLasLPesyetfvtaies.........seedltleevieklleeeerrke 137
                      ++L+sLP+s++ f+ ai+          ++ +lt  ++i+++l+e++r+k+
       CDO69147.1   2 TILTSLPDSWDAFIRAIDPtdllppaegQQAKLTSAKLIARILQEDRRLKQ 52 
                      69***************988888877788899**************99987 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.4   3.7e-05      0.22       2      17 ..      73      88 ..      72      89 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
                CTSSSSSSSSTTTTST CS
     zf-CCHC  2 kCynCGepGHiardCp 17
                +C+nC + GH    C 
  CDO69147.1 73 TCFNCSRHGHKQDKCR 88
                7*********999996 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.0   4.3e-05      0.26      32      48 ..      71      88 ..      70      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.3e-05
   zf-CCHC_4 32 sf.CyiCgvlGHsdkrCd 48
                +f C++C + GH+ ++C+
  CDO69147.1 71 RFtCFNCSRHGHKQDKCR 88
                555**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1502.05
//
Query:       CDO69148.1  [L=182]
Description: hypothetical protein BN946_scf185042.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-05   24.0   0.0    2.9e-05   23.6   0.0    1.1  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.078   12.2   0.0      0.081   12.2   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.2e-09   2.9e-05      10     122 ..      52     161 ..      49     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.2e-09
                 ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS..CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHH CS
     Pkinase  10 GsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk..hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiak 105
                 G+ G+V+ a+  ++g iv++Kk++ +    + + +++++  +i k  +  +  i+ +++v  ++d  +lv+ +++     ++ +    +s  ea + ++
  CDO69148.1  52 GNRGNVLDATGIRDGSIVVLKKVRMSTHPYEIDiSRFFSTESIAKDPRnhCVPILDVLDVPDSTDIKLLVMPLLH-----TFFS-PPFMSVGEAVECCR 144
                 899***********************9999888766666656666655534467778888777887788888777.....4554.356999******** PP

                 HHHHHHHHHHHTTEE-S CS
     Pkinase 106 qilegleylHskgiiHr 122
                 qi+egl+++Hs+++ Hr
  CDO69148.1 145 QIIEGLQFMHSHHVAHR 161
                 ****************9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     9e-06     0.081      99     131 ..     133     165 ..      51     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9e-06
                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SG CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaa 131
                   +++ + ++++ q+ +G+++++s+++ Hr + +
   CDO69148.1 133 FMSVGEAVECCRQIIEGLQFMHSHHVAHRFVQS 165
                  56788999*********************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1263.98
//
Query:       CDO69149.1  [L=213]
Description: hypothetical protein BN946_scf185042.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-36  125.8   0.0    2.9e-36  124.6   0.0    1.5  1  Arf              ADP-ribosylation factor family
    1.3e-09   38.3   0.0    2.6e-09   37.3   0.0    1.5  1  Roc              Ras of Complex, Roc, domain of DAPkinase
    5.2e-09   35.7   0.2    0.00031   20.0   0.0    2.4  2  G-alpha          G-protein alpha subunit
    1.1e-06   28.4   0.0    1.9e-06   27.5   0.0    1.5  1  Ras              Ras family
      1e-05   25.2   0.0     0.0029   17.2   0.0    2.1  2  GTP_EFTU         Elongation factor Tu GTP binding domain
      3e-05   23.5   0.0    5.5e-05   22.7   0.0    1.4  1  SRPRB            Signal recognition particle receptor beta su
    3.5e-05   23.3   0.0    4.1e-05   23.1   0.0    1.1  1  Gtr1_RagA        Gtr1/RagA G protein conserved region
    0.00011   22.2   0.0    0.00019   21.5   0.0    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
    0.00013   22.5   0.0     0.0007   20.1   0.0    1.9  1  ABC_tran         ABC transporter
     0.0019   18.5   0.0     0.0048   17.2   0.0    1.7  2  AAA_22           AAA domain
     0.0024   18.4   0.2     0.0043   17.6   0.1    1.4  2  AAA_23           AAA domain
     0.0042   16.8   0.0     0.0067   16.2   0.0    1.3  1  AAA_30           AAA domain
      0.005   16.4   0.0       0.32   10.6   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.94    9.4   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
      0.023   14.4   0.1      0.041   13.5   0.1    1.4  1  Thymidylate_kin  Thymidylate kinase
      0.034   13.9   0.0      0.065   13.0   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
      0.036   14.0   0.1       0.14   12.1   0.1    1.8  2  NACHT            NACHT domain
      0.037   14.4   0.3      0.072   13.5   0.0    1.6  2  AAA_16           AAA ATPase domain
      0.038   13.2   0.0      0.055   12.7   0.0    1.2  1  NB-ARC           NB-ARC domain
      0.045   13.4   0.0      0.076   12.6   0.0    1.3  1  SRP54            SRP54-type protein, GTPase domain
      0.069   12.5   0.0       0.11   11.8   0.0    1.3  1  TniB             Bacterial TniB protein
       0.08   13.1   0.1       0.21   11.7   0.0    1.7  2  AAA_33           AAA domain
       0.12   11.6   0.0       0.12   11.6   0.0    1.2  1  KAP_NTPase       KAP family P-loop domain
       0.13   12.9   0.2       0.19   12.3   0.2    1.7  1  AAA_18           AAA domain
       0.18   11.7   0.1       0.35   10.7   0.1    1.4  1  ATPase_2         ATPase domain predominantly from Archaea
       0.22   11.4   0.1       0.57   10.1   0.1    1.6  1  MobB             Molybdopterin guanine dinucleotide synthesis


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0   4.1e-39   2.9e-36       5     172 ..       8     204 ..       4     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 4.1e-39
                 HHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.......CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTT CS
         Arf   5 laklklkkkelrilllGLDnaGKtTilkklkleelvt.......tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreR 96 
                 l+++ ++k e+ ++++GLD+aGKtT+l+k+k+   +t       + PT+g n+ +++     +++wD+GGq+ +R++W++Y+++ +av+fv+D+ dreR
  CDO69149.1   8 LHEYLTRKEEFSVIIIGLDGAGKTTLLEKIKTLYNETpglppdkIAPTVGQNMGKITLPSTILKFWDLGGQRGIRSIWHRYYDDCHAVVFVIDAEDRER 106
                 556667799********************9987666666777779****************************************************** PP

                 HHHHHHHH..HHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG................SS....SSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf  97 leeakeeL..kalleeeelkevallvlaNKqDlpealseeelrellglee................lk....gkrkleiqkcsavkgeglkeglewls 172
                 l+e  e L  +++l+  ++ ev+ll+laNKqD p +ls ee+r+  +                   l+       +l +++ sa++g+g+  +++wl 
  CDO69149.1 107 LNEGWEVLpqDSVLSAPQILEVPLLLLANKQDSPRSLSVEEIRNDYEEWYrrkldsarrtygdetdLQhraeRIASLDVMGISALEGTGVRAAVDWLF 204
                 ******995568*******************************9887655567777777777777733544356688999999999999999999995 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   3.7e-12   2.6e-09       2      99 ..      20     112 ..      19     139 .. 0.67

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.7e-12
                 EEEESSTTSSHHHHHHCHCT..-CCC....-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHC CS
         Roc   2 vvlvGdsgvGKtsllkrfve..dkfs....ekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssen 94 
                 v+++G  g+GKt+ll+++ +  ++      +k  +t+g ++ +             ++ +  l++WD++Gq  +rs+ + y+ + +++++v+d+++ e+
  CDO69149.1  20 VIIIGLDGAGKTTLLEKIKTlyNETPglppDKIAPTVGQNMGKI------------TLPSTILKFWDLGGQRGIRSIWHRYYDDCHAVVFVIDAEDRER 106
                 79*************99875212221121134445555554332............2345689******************************998888 PP

                 HHH.HH CS
         Roc  95 lke.Wl 99 
                 l+e W 
  CDO69149.1 107 LNEgWE 112
                 765363 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.1e-05     0.028      20      50 ..      14      44 ..       5      52 .. 0.87
   2 !   20.0   0.0   4.5e-07   0.00031     188     234 ..      55     100 ..      50     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
                E..EEEEEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 20 kkrevkllllGqseSGKsTilkqlkllykkg 50
                +k+e++++++G ++ GK+T+l+++k+ly+++
  CDO69149.1 14 RKEEFSVIIIGLDGAGKTTLLEKIKTLYNET 44
                3579************************765 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 4.5e-07
                 --SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEE CS
     G-alpha 188 tvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvs 234
                 tvG +  k+ +  ++ ++++d+gGqr  r  W  ++dd  a++F++ 
  CDO69149.1  55 TVGQNMGKITLP-STILKFWDLGGQRGIRSIWHRYYDDCHAVVFVID 100
                 666677777776.67789***************************86 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.8e-09   1.9e-06       2     154 ..      20     201 ..      19     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.8e-09
                 EEEEESTTSSHHHHHHHHHH......SSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvk......dkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwv 94 
                 ++++G  + GKt+ll +  +      +  +++  +T+g +  + +i++   +  l+ wD  Gq   +s+ + yy d+++++ v d ++re +++  + +
  CDO69149.1  20 VIIIGLDGAGKTTLLEKIKTlynetpGLPPDKIAPTVGQN--MGKITLP--STILKFWDLGGQRGIRSIWHRYYDDCHAVVFVIDAEDRERLNEGWEVL 114
                 79************97643311001122356788888544..3445554..567899***********************************9988776 PP

                 HHHHHHST...TTSEEEEEEETTTGGG.......................G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHH CS
         Ras  95 eeikrvae...envpivLvGnKvDlee.......................kravsteegeelakelg.lkfletSAktnenveeafe 154
                  + +        +vp++L++nK D  +                       +   ++++ ++ a+++  l  + +SA + ++v+ a++
  CDO69149.1 115 PQDSVLSApqiLEVPLLLLANKQDSPRslsveeirndyeewyrrkldsarRTYGDETDLQHRAERIAsLDVMGISALEGTGVRAAVD 201
                 5533333335866***********998777777777777777777776532222334445556666667777777777777776665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0091       6.3       5      25 ..      19      39 ..      15      46 .. 0.83
   2 !   17.2   0.0   4.3e-06    0.0029      92     188 ..      90     203 ..      68     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0091
                EEEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLly 25
                 ++iig   +GKtTL++++ +
  CDO69149.1 19 SVIIIGLDGAGKTTLLEKIKT 39
                688999999********9965 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.3e-06
                 HT-SEEEEEEETT......TB..STHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH..........HHHHHHHHHTTTTTEEEE CS
    GTP_EFTU  92 rvlDgavlvvdav......eG..vepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk..........eeklekygekgekevpvv 171
                   ++ +v+v+da+      eG  v pq   vl   + ++vp+ ++ NK D +   +++ei +++++ ++rk          e++l++ +e+      v+
  CDO69149.1  90 DDCHAVVFVIDAEdrerlnEGweVLPQ-DSVLSAPQILEVPLLLLANKQDSPrSLSVEEIRNDYEEWYRRKldsarrtygdETDLQHRAERI-ASLDVM 186
                 568899999999955555555545555.5677777889**************9888888888888888777777788877777777777777.59**** PP

                 EEBTTTTBTHHHHHHHH CS
    GTP_EFTU 172 fgSalkgegvktlleal 188
                  +Sal+g gv++ ++ l
  CDO69149.1 187 GISALEGTGVRAAVDWL 203
                 **********9888766 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     8e-08   5.5e-05       5     139 ..      19     154 ..      15     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 8e-08
                 EEEEE-STTSSHHHHHHHHHHS..........S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttd..........svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevk 93 
                 +v+++Gl  +GKT+l++++ t           ++ +tv     +++l       + l++ D+ G+  +r+       + +  +++vfv+D+  d  +++
  CDO69149.1  19 SVIIIGLDGAGKTTLLEKIKTLynetpglppdKIAPTVGQNMGKITL-----PSTILKFWDLGGQRGIRSIWHR---YYDDCHAVVFVIDA-EDRERLN 108
                 79****************98864444443333333333333333333.....44788999********986544...58999********6.58899** PP

                 HHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHHHH CS
       SRPRB  94 evAEllyeilliteklkdavdiliACnKqelflakspklikdaLEk 139
                 e  E l +  + ++ +  +v++l+  nKq++  + s + i++  E+
  CDO69149.1 109 EGWEVLPQDSVLSAPQILEVPLLLLANKQDSPRSLSVEEIRNDYEE 154
                 ******98666666666789999999********999999998885 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.9e-08   4.1e-05       2      98 ..      20     114 ..      19     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5.9e-08
   Gtr1_RagA   2 vLLmGksgsGKtsmrsii...FdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedle 96 
                 v+++G  g+GKt++ + i   ++++      +++ t+  +  ++ +l    l+ wD+gGq+ +         ++ + ++ ++++V+D+e+re l+e  e
  CDO69149.1  20 VIIIGLDGAGKTTLLEKIktlYNETPGLPPDKIAPTVGQNMGKI-TLPSTILKFWDLGGQRGIRSIW-----HRYYDDCHAVVFVIDAEDRErLNEGWE 112
                 799**********96544222777777788899***********.677788*********9986653.....567899***********9975776655 PP

   Gtr1_RagA  97 tl 98 
                  l
  CDO69149.1 113 VL 114
                 54 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.7e-07   0.00019       2      88 ..      20     109 ..      19     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.7e-07
                 EEEEESTTSSHHHHHHHHH...TS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT.....TT CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt...ge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas.....ee 88 
                 v+i+G   +GK+tL+ ++    +e      dk   T   n g+++l  + ++++D+ G       ++g++  +++  + ++++++v+da+     +e
  CDO69149.1  20 VIIIGLDGAGKTTLLEKIKtlyNEtPGLPPDKIAPTVGQNMGKITLPSTILKFWDLGG-------QRGIRSIWHRYYDdCHAVVFVIDAEdrerlNE 109
                 89************998852225545677899999**********88899********.......46888889886666*********875444422 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     1e-06    0.0007      13      93 ..      19     168 ..      11     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1e-06
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEE............................................EETTCEGGG.......B-HHHCCHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxx.......xxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGei............................................lldgkdlke.......qeleslrke 60 
                  v i+G  GaGK+tLl+ +  l++ t G                                              +               +++e+l++ 
  CDO69149.1  19 SVIIIGLDGAGKTTLLEKIKTLYNETPGLPpdkiaptvgqnmgkitlpstilkfwdlggqrgirsiwhryyddcH-------AvvfvidaEDRERLNEG 110
                 689*********************977755555566667777777777777777777776666665544222221.......24455666778888888 PP

                 EEEE-SS--S-TTSBHHHH..........................HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxx RF
    ABC_tran  61 igvlpqepqlfpeltvren..........................esdeeiekalsklg 93 
                 ++vlpq++ l     + e                           +++++++ a++++g
  CDO69149.1 111 WEVLPQDSVLSAPQ-ILEVpllllankqdsprslsveeirndyeeWYRRKLDSARRTYG 168
                 88888886665554.55555677766666655555555555555544444555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.9e-06    0.0048       7      98 ..      19     100 ..      13     116 .. 0.69
   2 ?   -2.3   0.0       7.4   5.1e+03      19      37 ..     142     160 ..     134     198 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.9e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiD 98 
                 +++++G  G+GKTtll++++  ++e +     +p+ +  t+ + ++  +l + +l++++l+       ++ +++  +++ +++++ ++++iD
  CDO69149.1  19 SVIIIGLDGAGKTTLLEKIKTLYNETPG---LPPDKIAPTVGQNMGKITLPSTILKFWDLG------GQRGIRSIWHRYYDDCHA-VVFVID 100
                 789*******************975443...355555555555556666666666666643......333555666666666666.666665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.4
      AAA_22  19 Ttllrrlleqldeeakaee 37 
                 +++++++++ ++e++  + 
  CDO69149.1 142 SLSVEEIRNDYEEWYRRKL 160
                 4455555555555544443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   6.2e-06    0.0043      22      55 ..      20      57 ..      12      88 .. 0.86
   2 ?   -2.3   0.0       7.9   5.5e+03     136     146 ..     143     153 ..      98     182 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.2e-06
      AAA_23 22 tlItGpNGaGKTTildAiklaLygetprlsrks.....g 55
                ++I+G  GaGKTT+l+ ik  Ly+etp+l++++     g
  CDO69149.1 20 VIIIGLDGAGKTTLLEKIKT-LYNETPGLPPDKiaptvG 57
                58*****************6.9999***99987555553 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
      AAA_23 136 lflgqerfeef 146
                 l   + r++++
  CDO69149.1 143 LSVEEIRNDYE 153
                 22222222222 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.7e-06    0.0067      12      52 ..      11      52 ..       6      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.7e-06
      AAA_30 12 alltsgdrvavltGpAGtGKttalkalreaweaa.ggrvigl 52
                 l+ +++  +++ G  G+GKtt+l++++ ++++  g +   +
  CDO69149.1 11 YLTRKEEFSVIIIGLDGAGKTTLLEKIKTLYNETpGLPPDKI 52
                566777778999*******************99867554444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00046      0.32       3      20 ..      20      37 ..      18      47 .. 0.84
   2 ?    3.6   0.0     0.063        43     112     165 ..      92     151 ..      61     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00046
                EEEEESTTCCHHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnhl 20
                +++ G  G+GKTtLl+++
  CDO69149.1 20 VIIIGLDGAGKTTLLEKI 37
                689999*********997 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.063
                 ECEEEEEEETTTH........CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHH CS
        cobW 112 ldavvavvDaknl.......eaeeekieekaedqlaaadllvlnKtDlldeeallekleer 165
                   avv+v+Da+         e   +++   a++ l++  ll+ nK D   +   +e+++++
  CDO69149.1  92 CHAVVFVIDAEDRerlnegwEVLPQDSVLSAPQILEVPLLLLANKQDSPRSLS-VEEIRND 151
                 5789******9888888888777888888999999999999999999877663.3555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0014      0.94      99     120 ..      17      38 ..       3      46 .. 0.76
   2 ?    4.1   0.0     0.057        40      41      85 ..     122     164 ..      91     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
                  TSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinall 120
                  +  ++++G  G+GK+tL+++++
   CDO69149.1  17 EFSVIIIGLDGAGKTTLLEKIK 38 
                  3467899***********9987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.057
                  HHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsak 85 
                  + +  +++++++ nK D   + + +ee+++++e++ y+  l sa+
   CDO69149.1 122 APQILEVPLLLLANKQDSPRSLS-VEEIRNDYEEW-YRRKLDSAR 164
                  5556688999999********99.**********9.554444444 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     6e-05     0.041       3      22 ..      24      43 ..      22      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6e-05
                     ESTTSSHHHHHHHHHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlke 22
                     GlDGaGKtt +e++k  ++e
       CDO69149.1 24 GLDGAGKTTLLEKIKTLYNE 43
                     9**************99886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.5e-05     0.065      14      45 ..       7      40 ..       2      44 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-05
      AAA_29 14 g.htieidlkg.atlltGpsGsGKSTllDAiqal 45
                g h++  + ++ +++++G  G+GK+Tll  i++l
  CDO69149.1  7 GlHEYLTRKEEfSVIIIGLDGAGKTTLLEKIKTL 40
                55666666667889**************888776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0002      0.14       3      23 ..      20      40 ..      19      46 .. 0.89
   2 ?   -0.9   0.0         2   1.4e+03      81      92 ..      93     104 ..      75     143 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                vi+ G  G GKTtLl+k+ ++
  CDO69149.1 20 VIIIGLDGAGKTTLLEKIKTL 40
                89***************9876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                 CCEEEEEE-STT CS
       NACHT  81 erlLlilDglDe 92 
                 + +++++D+ D+
  CDO69149.1  93 HAVVFVIDAEDR 104
                 445566665543 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0    0.0001     0.072      23      50 ..      16      43 ..       3      71 .. 0.82
   2 ?   -2.5   0.1       8.1   5.6e+03     134     143 ..      92     101 ..      78     145 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
      AAA_16 23 rpelvllsGesGvGKsslvrellralek 50
                ++ +v+++G  G GK++l++++++ +++
  CDO69149.1 16 EEFSVIIIGLDGAGKTTLLEKIKTLYNE 43
                44589****************9986655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.1
      AAA_16 134 erplvlvlDd 143
                  + +v+v+D 
  CDO69149.1  92 CHAVVFVIDA 101
                 4556666664 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     8e-05     0.055       8      46 ..       8      43 ..       3      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8e-05
                HHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC  8 viekLlekdelqslvvalvGmgGvGKttlakqilnksde 46
                + e L +k+e+    v + G  G GKttl+++i   ++e
  CDO69149.1  8 LHEYLTRKEEFS---VIIIGLDGAGKTTLLEKIKTLYNE 43
                567788888888...8899*************9876555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.076       3      27 ..      19      43 ..      17      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
                EEEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkk 27
                 ++++Gl GaGKTt l K+  l+++
  CDO69149.1 19 SVIIIGLDGAGKTTLLEKIKTLYNE 43
                5789**************9988876 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.11      22      64 ..       4      46 ..       1      63 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
        TniB 22 rLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekd 64
                 L+ L+ey +rk+  +++++G    GKt+++ek + l+++++ 
  CDO69149.1  4 LLKGLHEYLTRKEEFSVIIIGLDGAGKTTLLEKIKTLYNETPG 46
                6899*****************************9999888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031      0.21       2      18 ..      20      36 ..      20      46 .. 0.90
   2 ?   -2.1   0.0       5.5   3.8e+03      60      60 ..     153     153 ..     104     183 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
      AAA_33  2 vllvGlpGsGKstlaer 18
                v+++Gl G+GK+tl+e+
  CDO69149.1 20 VIIIGLDGAGKTTLLEK 36
                799***********997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.5
      AAA_33  60 n 60 
                 +
  CDO69149.1 153 E 153
                 1 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018      0.12       8      49 ..       8      70 ..       3     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
  KAP_NTPase  8 ladilseptlatpivvgLygkWGsGKssllnkledelkefa........................k 49
                l+++l      ++++v + g  G+GK++ll+k++  ++e                           
  CDO69149.1  8 LHEYLTRK---EEFSVIIIGLDGAGKTTLLEKIKTLYNETPglppdkiaptvgqnmgkitlpstiL 70
                55666544...5666666666789*************99865555555555555555555555550 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00028      0.19       1      21 [.      20      40 ..      20     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00028
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                +++ G  G+GKttl + ++ +
  CDO69149.1 20 VIIIGLDGAGKTTLLEKIKTL 40
                79*************999654 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00051      0.35       8      40 ..       5      37 ..       3      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00051
    ATPase_2  8 lkeleeilerepneiyfiYGpegsGKtaLlkei 40
                lk l e+l r+++  + i G  g GKt+Ll +i
  CDO69149.1  5 LKGLHEYLTRKEEFSVIIIGLDGAGKTTLLEKI 37
                688999************************987 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00082      0.57       2      19 ..      20      37 ..      19      44 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00082
        MobB  2 lgivgksgsGKTtLlekl 19
                + i+g  g+GKTtLlek+
  CDO69149.1 20 VIIIGLDGAGKTTLLEKI 37
                5799************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1419.42
//
Query:       CDO69150.1  [L=214]
Description: hypothetical protein BN946_scf185042.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-25   89.7  33.9    1.3e-15   57.4  11.6    2.6  3  ATP-synt_C      ATP synthase subunit C
  ------ inclusion threshold ------
       0.22   12.0   2.2        3.5    8.1   1.1    2.2  2  G0-G1_switch_2  G0/G1 switch protein 2
        3.3    7.4   8.6       0.69    9.6   2.5    2.9  3  Oxidored_q2     NADH-ubiquinone/plastoquinone oxidoreductase 


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3         3   1.8e+04      48      54 ..      19      25 ..      16      26 .. 0.68
   2 !   57.4  11.6   2.2e-19   1.3e-15       2      59 ..      51     108 ..      50     109 .. 0.98
   3 !   43.3   8.7   5.9e-15   3.5e-11       3      60 .]     136     193 ..     134     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
                HHHHHHH CS
  ATP-synt_C 48 aialygL 54
                +ialy L
  CDO69150.1 19 VIALYLL 25
                5777765 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 2.2e-19
                 HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   2 gaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59 
                 g+gl++Gls+lg+G+gi ++g++++++ +r p+++tk li ++f+e++a+yg+i++++
  CDO69150.1  51 GIGLCIGLSVLGAGWGIFITGASILGGGVRAPRIRTKNLISIIFCEVVAIYGVIIGIV 108
                 89*****************************************************986 PP

  == domain 3  score: 43.3 bits;  conditional E-value: 5.9e-15
                 HHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   3 aglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                  gl vG + l +Gi++G+ags+++ a a +p+lf+k li+ +f  +++l+gLiv+l++
  CDO69150.1 136 GGLTVGACNLLCGICVGIAGSTAALADAADPDLFVKILIVEVFGSILGLFGLIVGLLM 193
                 59******************************************************97 PP

>> G0-G1_switch_2  G0/G1 switch protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.029   1.8e+02      31      45 ..      96     110 ..      85     126 .. 0.81
   2 ?    8.1   1.1   0.00058       3.5      24      52 ..     173     202 ..     167     209 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.029
  G0-G1_switch_2  31 svLallGvviglvet 45 
                      v+a++Gv+ig+v  
      CDO69150.1  96 EVVAIYGVIIGIVYS 110
                     699*********965 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00058
  G0-G1_switch_2  24 vklYvlGsvLallGvviglvet.vcspFss 52 
                     + + v Gs+L l+G+++gl+ +   s F++
      CDO69150.1 173 LIVEVFGSILGLFGLIVGLLMIgQASEFTA 202
                     445689************975413455655 PP

>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.23   1.4e+03       5      19 ..      13      27 ..       9      35 .. 0.69
   2 ?   -1.2   0.0      0.26   1.5e+03      28      50 ..      56      78 ..      51      86 .. 0.76
   3 ?    9.6   2.5   0.00011      0.69      20      85 ..      86     149 ..      67     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHH CS
  Oxidored_q2  5 liallfliGlygvll 19
                   +l ++i+ly++++
   CDO69150.1 13 STFLTVVIALYLLFT 27
                 556777788887775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHC.. CS
  Oxidored_q2 28 iglelisnavnlllvlagvfteg 50
                 igl++++ +  +++ +a+ + +g
   CDO69150.1 56 IGLSVLGAGWGIFITGASILGGG 78
                 78888888888888888877655 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00011
                  SSCCHHHHHHHHHHHHHHHHHHHHHHHHC...............TTSCGGHHHHHHHHHHHHHHHHHH CS
  Oxidored_q2  20 rrnllkvliglelisnavnlllvlagvftegtlvi..tnpatefadplpqalvLtaivigaaetavgL 85 
                  ++nl++++++  +   +v++ +v +++ +    ++  t  +t+ ++  + al    +++ga+ +  g+
   CDO69150.1  86 TKNLISIIFCEVVAIYGVIIGIVYSARVS----PVdeTLLYTRENYYTGYALFWGGLTVGACNLLCGI 149
                  79*************************98....55688888888888888888888888888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1452.68
//
Query:       CDO69151.1  [L=129]
Description: hypothetical protein BN946_scf185042.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-06   26.9   0.0    9.4e-06   26.3   0.0    1.3  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.015   15.1   0.0    1.2  1  DUF4448       Protein of unknown function (DUF4448)


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     1e-09   9.4e-06       1      93 []      33     127 ..      33     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1e-09
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsg.....tdpgtvtlvLcagss..nnlksvktiasgiknsdgsytwtvpaslesggaYflqiv.sesnegiynySd 89 
                   tsP++g+v++ g++ ++tW++s+     +++g + l  + g s  ++l+++ ++a + + ++g +t++v +++e+ ++Y + +  +++n+     S+
    CDO69151.1  33 TSPKAGDVWHIGTTQNVTWDTSAipagtNQSGLILLGHIVGDSedEHLDTKHPLAVNFPITAGFATVEV-PDVEPRDDYVVVLFgDSGNT-----SP 123
                   79*******************98776432233333333345554577************999*******.67************676665.....88 PP

  GPI-anchored  90 rFti 93 
                   +Fti
    CDO69151.1 124 KFTI 127
                   8887 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.6e-06     0.015      29      95 ..      34     100 ..      28     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-06
     DUF4448  29 tPkegselkvgktYyiTWdprfFdekenekVkihlsyvkestkekglkksffssdwlpnsdGfyplt 95 
                 +Pk g+ +++g+t  +TWd++   + +n++  i l ++  +++++ l+++     ++p + Gf++++
  CDO69151.1  34 SPKAGDVWHIGTTQNVTWDTSAIPAGTNQSGLILLGHIVGDSEDEHLDTKHPLAVNFPITAGFATVE 100
                 7********************9966666666666666666666555554444444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 911.29
//
Query:       CDO69152.1  [L=400]
Description: hypothetical protein BN946_scf185042.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-72  244.5   9.0    6.7e-63  213.0   7.4    2.0  2  Asp             Eukaryotic aspartyl protease
      3e-14   53.7   5.0    4.2e-13   49.9   5.0    2.2  1  TAXi_N          Xylanase inhibitor N-terminal
    0.00028   21.5   0.2      0.081   13.6   0.1    3.3  2  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.0   7.4   1.1e-66   6.7e-63       2     237 ..     110     340 ..     109     344 .. 0.95
   2 !   33.2   0.0     6e-12   3.6e-08     253     314 ..     334     398 ..     330     399 .. 0.91

  Alignments for each domain:
  == domain 1  score: 213.0 bits;  conditional E-value: 1.1e-66
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepgs 99 
                 ++g+isiGtp qkf ++fDTGSsdlWVpss+c+ ss c+s+++y++s+Sst +k++ +++i+YGdg +vsG +++dtv+v+g+tvknq f  +t+ ++ 
  CDO69152.1 110 WAGTISIGTPGQKFLIDFDTGSSDLWVPSSSCR-SSTCSSKKKYTASSSSTSSKKSGTFNIEYGDGsTVSGPVYTDTVTVAGVTVKNQYFSPVTTLSS- 206
                 689*****************************9.99***********************************************************999. PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggktvlcss 197
                 +f++ ++dG+LGl+++eis  + +p+f++ vsqg ++e vf++ l    ++g+e+ +Gg+++  y+Gs+ y +v++ +g+wq+      vg+k+v   s
  CDO69152.1 207 SFADDPIDGLLGLAYPEISNLDESPFFNTAVSQGAVDEGVFGFKLA---SSGSELYLGGTNSDLYSGSIEYHDVDTsTGFWQLPGATAYVGSKAV--VS 300
                 588999***************************************7...99***********************886899***************..89 PP

                 EEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 198 gcqailDtGTsllalptsivekiakaigakksesegeyvv 237
                 +++ i+D+GT+++++p s+v+ + k ++++k    +++++
  CDO69152.1 301 NFETIIDSGTTIMYGPPSAVRTLYKSVSGSKLWGGKKWAI 340
                 9**************************9998777666665 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 6e-12
                 TTEEEEEEGGGGEEEESSSTTSEEEESE...EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 253 ggakitvpvselvlkeeeseesqCilgl...vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 gg+k  ++++++ l e+e++++qC+ +l       ++++w+LGd F++++y+ f +d++ vg+Ae
  CDO69152.1 334 GGKKWAISADNFNLGETETGSGQCVGALagqDVGLGSNVWLLGDSFMKNVYTAFSFDDDSVGFAE 398
                 7999************************6654455789**************************8 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   5.0   7.1e-17   4.2e-13       4     147 ..     113     228 ..     110     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 7.1e-17
      TAXi_N   4 sisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatdtlt 102
                 +isiGtp+q++++++DtGs+ +Wv                     s+++  +css++        s++s+ss+++ +++i+yg dgs++sG + tdt+t
  CDO69152.1 113 TISIGTPGQKFLIDFDTGSSDLWVPS-------------------SSCRSSTCSSKKKY----TASSSSTSSKKSGTFNIEYG-DGSTVSGPVYTDTVT 187
                 79***********************9...................44444555555444....677888999999*******8.*************** PP

      TAXi_N 103 lsstdgksvkvpnlvfGCgksnlgglaag.adGilGLGrgklSlvs 147
                 +      +v+v+n  f+ +++ ++++a++  dG+lGL++ ++S ++
  CDO69152.1 188 V-----AGVTVKNQYFSPVTTLSSSFADDpIDGLLGLAYPEISNLD 228
                 *.....899********9998888888744**********999765 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.4e-05     0.081       7      88 ..     120     219 ..     112     221 .. 0.66
   2 ?    3.4   0.0     0.021   1.2e+02      10      39 ..     302     331 ..     290     351 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
  Asp_protease_2   7 GkpvrfllDTGasttlispelaekl......glkvreseltvrvsg......aggevkarlvrldslklggltlknvpalvld......lgeeid 83 
                     G+++   +DTG+s + ++++  ++       + + ++s++  + sg       +g++ +  v  d+++++g+t+kn+ ++ +        +++id
      CDO69152.1 120 GQKFLIDFDTGSSDLWVPSSSCRSStcsskkKYTASSSSTSSKKSGtfnieyGDGSTVSGPVYTDTVTVAGVTVKNQYFSPVTtlsssfADDPID 214
                     67777889999999999999887764454442222222222222222222325777888888888999999999999665555555778789*** PP

  Asp_protease_2  84 glLGm 88 
                     glLG+
      CDO69152.1 215 GLLGL 219
                     ****7 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
  Asp_protease_2  10 vrfllDTGasttlispelaeklglkvrese 39 
                     ++ ++D+G + ++ +p+++++l  +v++s+
      CDO69152.1 302 FETIIDSGTTIMYGPPSAVRTLYKSVSGSK 331
                     5779*****************988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.56
# Mc/sec: 2132.12
//
Query:       CDO69153.1  [L=477]
Description: hypothetical protein BN946_scf185042.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-09   36.6   0.1    4.5e-09   35.8   0.1    1.4  1  CUE         CUE domain
  ------ inclusion threshold ------
      0.059   13.3   0.0      0.093   12.6   0.0    1.3  1  FliW        FliW protein
        1.4    8.4   7.7        5.5    6.5   2.3    2.9  2  p47_phox_C  NADPH oxidase subunit p47Phox, C terminal domain


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   7.6e-13   4.5e-09       3      42 .]     139     178 ..     137     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7.6e-13
                 HHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHCC CS
         CUE   3 qmletLkemFPdldeevIravLrasngnvEatinaLLegs 42 
                  ++ +L+ mFPd+d+ +++ vL + ng+ E++++ LL +s
  CDO69153.1 139 PQVASLRAMFPDFDVVILQSVLDSVNGDQERAVDVLLGMS 178
                 6899*********************************997 PP

>> FliW  FliW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.093      43     118 ..     142     218 ..     136     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
                 E-GGGT-TT------HHHHHHTT--SGGGEEEEEEEE-.-SS.GG-EE-SSS-EEEETTTTEEEE---SS----TTE CS
        FliW  43 idPflffpdYelelsdeelelleleseedvlvlvivtvpedd.ekmtvNlkAPivinvkkrlgvQviledekyelkh 118
                 ++  ++fpd+++++ +++l++++ ++e+ v+vl+ ++ pe   +++ +   +P  ++ +++l++Q+++ed++   +h
  CDO69153.1 142 ASLRAMFPDFDVVILQSVLDSVNGDQERAVDVLLGMSDPEYVsTHNATQTTGPSSLDLDEQLARQLMMEDQQQAQRH 218
                 566789*******************************999889999999*********************9998887 PP

>> p47_phox_C  NADPH oxidase subunit p47Phox, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.3   0.00092       5.5       3      12 ..      88      97 ..      86      99 .. 0.90
   2 ?    3.7   0.3    0.0068        41       5      15 ..     410     420 ..     406     421 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00092
  p47_phox_C  3 kpqPaVPPRP 12
                 p+Pa PPRP
  CDO69153.1 88 EPTPALPPRP 97
                69******** PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0068
  p47_phox_C   5 qPaVPPRPSad 15 
                  Pa  PRPS d
  CDO69153.1 410 SPAASPRPSGD 420
                 79999****88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.56
# Mc/sec: 2558.90
//
Query:       CDO69154.1  [L=358]
Description: hypothetical protein BN946_scf185042.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-31  106.4   4.8    1.1e-30  105.9   4.8    1.2  1  DUF3844      Domain of unknown function (DUF3844)
  ------ inclusion threshold ------
      0.022   15.5   0.3      0.051   14.4   0.3    1.5  1  LZ_Tnp_IS66  Transposase C of IS166 homeodomain
        7.5    7.0  10.5         14    6.2  10.5    1.5  1  EGF_2        EGF-like domain


Domain annotation for each model (and alignments):
>> DUF3844  Domain of unknown function (DUF3844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   4.8   1.8e-34   1.1e-30       1     104 [.     254     350 ..     254     351 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.8e-34
     DUF3844   1 CfeseeacekatnsCsghGecvkklkskeegeacfvCkCeatvekkkedkkkttkwgGeaCekkDvsvefvllalttvalvvlvilsislLfsvGeeeL 99 
                 C++s + c +atn CsghG+c +++k+   g++cfvC+C+ t+++k+    ++++w+G+aCe+kDvs +fvlla+ttv+l++lv  si+lL+ vG+++L
  CDO69154.1 254 CYSSVDVCGNATNACSGHGQCLEATKA---GKTCFVCACSITTDEKG----RKEQWAGSACERKDVSGPFVLLAGTTVTLLLLVGGSIALLTAVGDQKL 345
                 ***********************9886...99********9977665....99********************************************** PP

     DUF3844 100 pgvlg 104
                 p++l+
  CDO69154.1 346 PSTLT 350
                 **996 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   8.5e-06     0.051      11      66 ..     182     243 ..     180     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.5e-06
  LZ_Tnp_IS66  11 rklFGrsSE..ltardpeQleL....aleeleaeeaeveakapkskkrkkrgRkpLpahLPR 66 
                  r+ FG+ SE  +ta ++    L    + +++  + ++v  + +k+++r+++   pLp+ LPR
   CDO69154.1 182 RHTFGKDSEqyRTAVQTVKVILdrlmERQDVNLALVTVPSHGSKHHRRQQPPQSPLPPPLPR 243
                  899******8865555555555776677788899999999999999***************9 PP

>> EGF_2  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.5    0.0023        14       5      32 .]     265     307 ..     261     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0023
       EGF_2   5 deiCgghGtCvnqc..G....qCdC.........dsgyqGktC 32 
                  ++C+ghG+C +++  G    +C C         + ++ G  C
  CDO69154.1 265 TNACSGHGQCLEATkaGktcfVCACsittdekgrKEQWAGSAC 307
                 689*******766646765555***888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2191.60
//
Query:       CDO69155.1  [L=168]
Description: hypothetical protein BN946_scf185042.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0017   19.2   5.1      0.003   18.4   5.1    1.4  1  Nucleoporin_FG  Nucleoporin FG repeat region
      0.009   16.7   3.8      0.012   16.3   3.8    1.1  1  DUF4472         Domain of unknown function (DUF4472)
  ------ inclusion threshold ------
       0.14   12.1   1.1       0.18   11.7   1.1    1.2  1  DinB            DinB family
       0.45   10.1   3.0       0.58    9.8   3.0    1.1  1  DUF2229         CoA enzyme activase uncharacterised domain (D


Domain annotation for each model (and alignments):
>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   5.1   6.6e-07     0.003       7      70 ..      22      87 ..       3      93 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.6e-07
  Nucleoporin_FG  7 atstsgglFGststt..atstgglFGasstatatasgg.glfgat.sqtaasgglFGstnattqttat 70
                    ++s s glFG  s++  + +++   G  +  ++++    ++ g+t ++++ sgglFG   ++++++ +
      CDO69155.1 22 PPSRSRGLFGRRSNSldNGNNNYSNGRGNDGSNNNG-YdNVNGSTrTKSTRSGGLFGRRRSSSTSS-S 87
                    455666777777777552222223332233333333.33677777777777788888777776654.2 PP

>> DUF4472  Domain of unknown function (DUF4472)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.8   2.7e-06     0.012      36     104 ..      97     165 ..      93     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.7e-06
     DUF4472  36 kvlalenrvlelelerekaaeeiqslrerlaeleeekkeleeeyvvlkknyqalekefekekkkqqels 104
                  +la+ +rv+e e+ ++ a ++ +++r+ +++++++ ++le+e +   ++++a ++e ++ kk + +l+
  CDO69155.1  97 SILAARQRVTEAEAAEAAADRALNDARAAVRAAKDQVRRLEQEAMEEARRAKAKQAEAKSIKKSTGRLG 165
                 5899*****************************************************999999888876 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1     4e-05      0.18      67     125 ..     106     164 ..      92     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4e-05
                 SSSGGGT---------HHHHHHHHHHHHHHHHCT--HHHHHSEE------SS-EEHHHH CS
        DinB  67 gapavddqterkeleeldalrealderliafldqltdleretlldradagtvkmtlael 125
                  +++  + +  ++l++++a+++a++++++ ++++  +++r+ ++++a+a+++k +++ l
  CDO69155.1 106 TEAEAAEAAADRALNDARAAVRAAKDQVRRLEQEAMEEARRAKAKQAEAKSIKKSTGRL 164
                 5566677788899**************************************99988766 PP

>> DUF2229  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.0   0.00013      0.58     126     175 ..     100     149 ..      79     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
     DUF2229 126 lakqlleelgiskkeikkAvekAleaqkafkeelrkkgeelleeleeegk 175
                 +a+q ++e ++ ++++++A++ A++a +a+k+++r+ ++e++ee+++ + 
  CDO69155.1 100 AARQRVTEAEAAEAAADRALNDARAAVRAAKDQVRRLEQEAMEEARRAKA 149
                 44555568899999*****************************8777543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2169  (0.120977); expected 358.6 (0.02)
Passed bias filter:                      893  (0.0498076); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1151.52
//
Query:       CDO69156.1  [L=296]
Description: hypothetical protein BN946_scf185042.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-56  193.8   0.0    8.4e-36  124.8   0.0    2.1  2  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   1.3e-22   2.4e-18       1     139 [.       9     145 ..       9     173 .. 0.62
   2 !  124.8   0.0   4.7e-40   8.4e-36     305     415 .]     172     296 .]     159     296 .] 0.72

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 1.3e-22
       TFIIA   1 vYrsvIedVIesvredFeeeGvdeqvLeeLkqlWesKllqskaaefpwdpkpeeaqspqfvlqlpqslkqalq..asaaaa.................. 79 
                 +Yr vI+dVI++++  F e Gv e vL eL++ We K+++s++a+f   p+p++a++p   +  p+ ++  +   ++ +a                   
  CDO69156.1   9 IYRAVIDDVIANIKPEFDEYGVSEDVLAELQSKWEAKVIASRVADFEPAPQPQSAAPPAHPAYPPHPMHMPHGhyPPHTAYaqppphpmqphvkaepvd 107
                 6********************************************************999999999888777443222222222222222222222222 PP

       TFIIA  80 ...........sqapastsqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasg 139
                               p+ +  + ps                                   +p g+  q+a++
  CDO69156.1 108 nrymlsnptmaYGLPPLAGPQIPSR---------------------------------PMPGGQPMQYAQM 145
                 2222222222211111111122222.................................2333444444443 PP

  == domain 2  score: 124.8 bits;  conditional E-value: 4.7e-40
       TFIIA 305 ssladlseilqlDGagddsde...............eeeeeesdedsdsessdd..edeq.......veEDplNSd.DDvddeddddlfdtdn...... 372
                 s++a++ +i+q+DG+  +s+e                                +  +  q        + +++NSd DD+d++ +d+  +         
  CDO69156.1 172 SQAASAARIPQVDGPSSSSSEspspppsqnyaprssH---------------PSlpQPAQasatsrtDDSEAINSDlDDSDSDVEDEGIE--Ggaadqd 253
                 55667899************96666655433332220...............222211113344455678******99988765555333..2224567 PP

       TFIIA 373 vivCqYDKvhRsKNKWKftLKDGvmtvnGkdYVFsKAiGeaEW 415
                 ++ C+YDKv R+KNKWK++LKDG +++nGkdY+F+K  Ge+EW
  CDO69156.1 254 IVFCTYDKVARVKNKWKCVLKDGMIHINGKDYLFAKCSGEFEW 296
                 ******************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1919.58
//
Query:       CDO69157.1  [L=683]
Description: hypothetical protein BN946_scf185042.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.3   0.1       0.12   12.2   0.1    1.5  1  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.8e-06      0.12      17      45 ..     611     639 ..     608     641 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-06
    LapA_dom  17 lpLsllllvafgiGallgwllslwsylrl 45 
                 lp ++++++ +g+G+++g++++l+++ r+
  CDO69157.1 611 LPAIIVVAAIAGLGLVVGLIICLVRRRRN 639
                 799********************955554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 4401.34
//
Query:       CDO69158.1  [L=153]
Description: hypothetical protein BN946_scf185042.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-25   88.1   0.5    5.7e-24   85.2   0.2    1.9  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.2   3.2e-28   5.7e-24       6      79 ..      13      93 ..       9     107 .. 0.92
   2 ?    1.2   0.0     0.019   3.4e+02     158     173 ..     110     125 ..     103     134 .. 0.76

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 3.2e-28
                --SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH........--SS---S--B---EEETTEEEEEB- CS
   Gti1_Pac2  6 iettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeees........gikRWTDGvsWSpSrilgnfLvYrel 79
                i++  da+++++av  gil+ v+rRl+ +Er+ +i+sG v v+ee+++        gi RWTDG +W+pSr+ ++fL Y+e 
  CDO69158.1 13 IRSMSDAHVIFHAVTLGILPIVSRRLDIEERR-YIHSGCVCVWEERSAagegssvtGIERWTDGRRWGPSRVRDEFLYYQEK 93
                78999***************************.*************99999999**************************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.019
                 ---EEEEEEEEEETTT CS
   Gti1_Pac2 158 dgLvKkTisvtlkgke 173
                 ++L+K+T+sv +++ +
  CDO69158.1 110 SRLIKQTYSVFVDTPT 125
                 579******9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1131.83
//
Query:       CDO69159.1  [L=482]
Description: hypothetical protein BN946_scf185042.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-14   52.0   0.8    2.9e-13   50.3   0.0    2.1  3  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.6e-17   2.9e-13       4      70 ..      13      85 ..      11      88 .. 0.94
   2 ?   -1.1   0.0     0.095   1.7e+03      72      98 ..     105     131 ..      98     194 .. 0.55
   3 ?   -3.2   0.0      0.42   7.6e+03      26      35 ..     371     380 ..     352     412 .. 0.63

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.6e-17
                S---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH.......--SS---S--B---EEE CS
   Gti1_Pac2  4 gyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeees.......gikRWTDGvsWSpSril 70
                ++i++ +da+ l+ av+ g+l+++ +Rl+ +Er+  ++ G+v+v+ee+         ++ R+T G sW  Sr+ 
  CDO69159.1 13 VHIRSAADAHKLFYAVQLGLLPKIDKRLDANERA-ALRPGNVYVWEEKGPntdsfsvSMERFTEGKSWTASRVR 85
                69********************************.************98777889999**************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.095
                 TEEEEEB-------------------- CS
   Gti1_Pac2  72 nfLvYreldkkrakkkkkkkkkkskes 98 
                 +fL+Y e  +k ++++++  + ++ ++
  CDO69159.1 105 DFLMYFESPRKGKANASRPFALSRARR 131
                 566666665554444444333222222 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.42
                 --SS---HHH CS
   Gti1_Pac2  26 rvtrRlkekE 35 
                 +v+rRl++++
  CDO69159.1 371 HVQRRLSHSN 380
                 4444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3280.97
//
Query:       CDO69160.1  [L=514]
Description: hypothetical protein BN946_scf185042.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-05   22.9   2.4    6.5e-05   22.7   0.0    2.4  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.6e-09   6.5e-05       2      47 ..      64     139 ..      63     140 .. 0.73
   2 ?   -5.1   2.7         1   1.8e+04      29      45 ..     189     204 ..     189     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.6e-09
  F-box-like   2 srLPdEiLlqIF...............................syLppsd.LlrlalVC..rrWrrvaldtplLWrrlvl 47 
                 +rLP+Ei l+IF                               s  p ++  + +alVC  r Wr +a  t  L+ ++vl
  CDO69160.1  64 ARLPPEIWLEIFryathvprartivpadpfaperpadyargvnS--PVQSmRTKCALVCvgRVWRGLA--TEILYEHVVL 139
                 79**********66666666666666666666666655555444..4444355599999999******..88******98 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 1
  F-box-like  29 rrWrrvaldtplLWrrl 45 
                 rrW+r  +   + W+ +
  CDO69160.1 189 RRWARSSQWA-QYWHCI 204
                 7898887555.888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 3013.31
//
Query:       CDO69161.1  [L=317]
Description: hypothetical protein BN946_scf185042.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 1971.39
//
Query:       CDO69162.1  [L=437]
Description: hypothetical protein BN946_scf185042.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-13   50.6   0.7    6.3e-13   49.5   0.1    1.9  2  Rubis-subs-bind  Rubisco LSMT substrate-binding
    1.9e-10   41.4   0.1    6.6e-10   39.6   0.0    1.9  2  SET              SET domain
  ------ inclusion threshold ------
        3.9    6.7   8.1        6.2    6.0   8.1    1.2  1  NOA36            NOA36 protein


Domain annotation for each model (and alignments):
>> Rubis-subs-bind  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.6   9.3e+03      29      56 ..     176     211 ..     164     232 .. 0.55
   2 !   49.5   0.1   1.1e-16   6.3e-13      27     129 .]     308     401 ..     282     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
  Rubis-subs-bind  29 e..........egipeeLlaylrvllasekdakeleel 56 
                      +          ++++ ++++++ +l+a+   ++e ++l
       CDO69162.1 176 DeddeddedheDPADVAMVPMADMLNAR--FESENAKL 211
                      2344444444466666666666666664..44444444 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 1.1e-16
  Rubis-subs-bind  27 kleegipeeLlaylrvllasekdakeleelaskeedsglaseplsddnEaaalrllldrckalLsaypttleeDeellkdadaavtn.rerlav 119
                      + + ++pee++ ++r+ll+    ++e+e+ a+k        +  +++ +  +l++ ++ ++++L  yptt+eeDe l +++   +++ ++++av
       CDO69162.1 308 HTDCELPEEFISFTRLLLL---PKDEWEKTAKKS-------KLPKPKVDRDVLDVASQVLEKRLTDYPTTVEEDEHLFASDAFGRLSlNKKHAV 391
                      44489**************...9*********83.......22344456999***************************987776669****** PP

  Rubis-subs-bind 120 qlrvgEkrIL 129
                       +r+gEkrIL
       CDO69162.1 392 IVRLGEKRIL 401
                      *********9 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.1e-13   6.6e-10      36     169 .]      31     237 ..       7     237 .. 0.65
   2 ?   -1.8   0.0      0.59   3.5e+03      14      61 ..     316     377 ..     303     423 .. 0.59

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.1e-13
                 H...HTEEEEEXGGXX.GGSX.HHHHHHHTTSSHHHHHHHHHH.HHHHHHHHTHHHHHHHXTTTS............X....................X CS
                 x...xxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx............x....................x RF
         SET  36 e...aylfslpeapkn.laft.kelakasastllqklakdqkq.aekedtdaalkasskaesdln............a....................s 96 
                 +    yl  lp+++ + +++  ++l++++++  ++k++ d+++ + +e+ + a+k  ++ +   n            +                     
  CDO69162.1  31 SkwsGYLAALPSKFDTpMFWGeEDLQELQGTAVVGKIGRDEAErNYHEKVAPAIKSRPDLFPEDNlskffsleryhiMgsrilsrsfhveqwkgehseD 129
                 1555677777866666566658******************98724567777788888877777776555554444441444444555555555554421 PP

                 XHCCCCCHCCCHEEEETEEEEEECCC...............................................................GTTGGGCEEX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...............................................................xxxxxxxxxx RF
         SET  97 kpeagafsaiagysidaralksgnga...............................................................gplarflNHs 132
                                          +                                                               +p+a++lN  
  CDO69162.1 130 -------------------------QekdddsgagnssamdidpadgagpagdvpaveneeadaeelhleadeddeddedhedpadvamVPMADMLNAR 203
                 .........................0222222222222333333333333344444444445555555566777777777888889999********99 PP

                 S.SSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 133 C.dpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                   + N++l+++     +++ +++t++Ik+GeE+ ++Yg
  CDO69162.1 204 FeSENAKLFYEE----RELRMVSTKPIKAGEEIWNTYG 237
                 867799777776....*********************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.59
                 XEEEEEEECCEECHHHHHHHHHH............................HTEEEEEXGGXXGGSX.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxx.xxxxxxxxx RF
         SET  14 eficeypeeiiltkdeadksele............................aylfslpeapknlaft.kelakasas 61 
                 efi ++ + ++l kde++k  ++                                           t +e++++ as
  CDO69162.1 316 EFI-SFTRLLLLPKDEWEKTAKKsklpkpkvdrdvldvasqvlekrltdypT--------------TvEEDEHLFAS 377
                 455.455666777777776666666666554444444444333322221110..............13333333333 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.1     0.001       6.2     227     297 ..     114     187 ..     104     194 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.001
       NOA36 227 slstrslkfgrqkqadgsddddddeedsdydaylkalasg...ddeddegdedddddddeedddeeeddedeee 297
                 s s    ++  ++ +d+++ddd+ +++s   +   a ++g   d  + e++e d ++ + e d+++edded+e+
  CDO69162.1 114 SRSFHVEQWKGEHSEDQEKDDDSGAGNSSAMDIDPADGAGpagDVPAVENEEADAEELHLEADEDDEDDEDHED 187
                 55555555544443444444443333333333333333331113333333333333333444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3128.33
//
Query:       CDO69163.1  [L=1091]
Description: hypothetical protein BN946_scf185042.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-29  102.6  27.5    6.4e-05   23.4   0.1   10.3 11  TPR_19       Tetratricopeptide repeat
    4.3e-26   89.6  26.0    8.8e-05   22.2   0.0   12.9 15  TPR_1        Tetratricopeptide repeat
    2.2e-23   80.4  44.8    0.00051   19.9   1.9   14.5 15  TPR_2        Tetratricopeptide repeat
    1.1e-16   60.1  46.0      0.013   16.2   0.3   15.1 15  TPR_14       Tetratricopeptide repeat
    1.1e-14   54.8  33.3      0.011   16.4   0.0   10.5 10  TPR_16       Tetratricopeptide repeat
      8e-14   51.3  25.2    6.8e-05   23.2   0.4   11.9 12  TPR_6        Tetratricopeptide repeat
    8.5e-13   48.4  40.1    3.3e-05   24.1   2.7   10.9 11  TPR_12       Tetratricopeptide repeat
    1.2e-12   46.9  20.4     0.0032   17.6   1.0   10.7 10  TPR_8        Tetratricopeptide repeat
    9.1e-10   37.9  19.0       0.16   12.0   0.1    9.4  9  TPR_7        Tetratricopeptide repeat
    1.2e-08   35.0  13.0      0.012   15.8   0.4    6.4  6  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
    1.5e-08   34.5  20.8        9.2    6.9   0.0   11.9 12  TPR_17       Tetratricopeptide repeat
    7.9e-06   26.0   8.1        6.6    7.7   0.0    7.4  7  TPR_4        Tetratricopeptide repeat
    0.00072   19.2  20.6       0.65    9.7   0.1    8.5  9  TPR_11       TPR repeat
      0.007   16.2  34.7       0.86    9.6   0.3    9.6  9  TPR_10       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.64   10.2   0.0       0.64   10.2   0.0    5.8  4  HemY_N       HemY protein N-terminus
          5    7.1   8.6         15    5.5   8.6    1.9  1  Dec-1        Dec-1 repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3       1.6   1.7e+03      25      52 ..      52      79 ..      42      90 .. 0.79
   2 !    7.9   0.0    0.0039       4.4      32      66 ..     161     193 ..     155     197 .. 0.71
   3 !   23.2   0.0   6.8e-08   7.6e-05       3      58 ..     166     221 ..     164     227 .. 0.93
   4 !   18.8   0.0   1.6e-06    0.0018       2      58 ..     199     256 ..     198     265 .. 0.90
   5 !   12.8   0.6   0.00012      0.13      13      49 ..     291     327 ..     289     331 .. 0.91
   6 !   23.4   0.1   5.7e-08   6.4e-05       3      66 ..     352     414 ..     351     416 .. 0.87
   7 !   19.8   0.9   7.3e-07   0.00082       4      57 ..     528     590 ..     526     594 .. 0.88
   8 !   12.8   0.0   0.00012      0.13       6      47 ..     596     637 ..     591     655 .. 0.89
   9 ?   -0.1   0.1       1.2   1.3e+03       9      33 ..     684     708 ..     682     711 .. 0.86
  10 !   12.5   0.0   0.00015      0.17       7      62 ..     737     791 ..     727     796 .. 0.87
  11 ?    2.7   0.3      0.16   1.8e+02       8      39 ..     814     845 ..     810     876 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.6
      TPR_19 25 aearllLAeallalgqldeAealLdalp 52
                 +++ +LA  ++  g ld+Ae++ +++ 
  CDO69163.1 52 VWIWTRLAAEYWRRGLLDAAEKIAQTAE 79
                5678889999999999999999988775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0039
      TPR_19  32 AeallalgqldeAealLdalpeedpddaryasLlA 66 
                  ++++ +gq+d+A ++ d +++e+p    +a Ll+
  CDO69163.1 161 GILQMTSGQWDDAGRTFDSVLAEKPT-NVVA-LLG 193
                 67888999999999999999999998.4444.433 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 6.8e-08
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                  +g+ ++A + + ++l+e+p n  a+l+ A++ +a  ql +A +l +++++ +p++
  CDO69163.1 166 TSGQWDDAGRTFDSVLAEKPTNVVALLGKAKIAYAKRQLPQALKLFQKVLQLNPNC 221
                 579**************************************************994 PP

  == domain 4  score: 18.8 bits;  conditional E-value: 1.6e-06
      TPR_19   2 laegdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpdd 58 
                 +a  ++ +Al+l++++lq +p+  ++ r++   +l+ + + ++A+a+ ++ +e +p d
  CDO69163.1 199 YAKRQLPQALKLFQKVLQLNPNcRPDPRIGIGLCLWGMDHKAKAKAAWQRSLEVNPGD 256
                 678899**********************************************999996 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 0.00012
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLd 49 
                 l e+a+ ++ kn++a+ +L+e+ l+ gq++ A +l +
  CDO69163.1 291 LIERAFNANQKNSAAANALCELFLQKGQTKRALKLAE 327
                 67899999************************99865 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 5.7e-08
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 +eg   +A+ ++++a ++  +n  a ++LA+++l + ++++A+ +Ld  ++   + +    L+A
  CDO69163.1 352 KEGSIRDAMGHFQKAKEARKDNVLATIGLAQLQLRNDEFAAAIHTLDSFLQTPNN-PKSLELMA 414
                 6899******************************************987666555.66666666 PP

  == domain 7  score: 19.8 bits;  conditional E-value: 7.3e-07
      TPR_19   4 egdyaeAlalleqalqedpk.........naearllLAeallalgqldeAealLdalpeedpd 57 
                 eg ++eA +l+e  l+++++         +  ++++LA+++  +g+ ++A+++ d+l++  p 
  CDO69163.1 528 EGHFDEARSLYETSLTHAAGldssaaeamSTSILYNLARVYEDQGEEAKAKEAYDKLLARHPE 590
                 799**********9988666666667788****************************999886 PP

  == domain 8  score: 12.8 bits;  conditional E-value: 0.00012
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAeal 47 
                 ++ +A++ll+qal+    n+++r+ +   l++++ ++ A++ 
  CDO69163.1 596 RHNDAHELLKQALSSHSTNLNVRAFYTHFLIQSNLPKPAKDF 637
                 799*******************************99999976 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 1.2
      TPR_19   9 eAlalleqalqedpknaearllLAe 33 
                 + ++++e+al  dp  a a+ +LA+
  CDO69163.1 684 RSAEIYEKALHLDPLCAVAAQGLAI 708
                 5589**********99999999997 PP

  == domain 10  score: 12.5 bits;  conditional E-value: 0.00015
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                   eAl++++++  e+ +++ +  ++  +++a  ++d A++  +++ + +  ++++a
  CDO69163.1 737 SREALDIFAKV-RESINDGSVYTNMGHCYYARDEFDRAIESYETASKRFYSHQNVA 791
                 56899999996.888899999************************99999887776 PP

  == domain 11  score: 2.7 bits;  conditional E-value: 0.16
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalg 39 
                   Al++ ++al   p + +++++ A ++ ++ 
  CDO69163.1 814 NTALQYAQKALHLCPWDKAILYNIAMIQHKAA 845
                 689*******************9999887765 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.04        45       2      22 ..      53      73 ..      52      78 .. 0.90
   2 ?    0.4   0.0      0.59   6.6e+02       7      34 .]     160     187 ..     158     187 .. 0.91
   3 !   21.3   0.1   1.5e-07   0.00017       3      34 .]     190     221 ..     188     221 .. 0.95
   4 !    9.3   0.0   0.00094         1       6      33 ..     228     255 ..     224     256 .. 0.93
   5 ?    0.2   0.3      0.66   7.4e+02       7      29 ..     309     331 ..     304     333 .. 0.82
   6 ?    3.6   0.0     0.057        64       3      31 ..     342     370 ..     340     373 .. 0.84
   7 ?   -3.0   0.0       6.9   7.7e+03       6      21 ..     379     394 ..     378     396 .. 0.79
   8 ?   -2.0   0.1       3.3   3.7e+03      22      31 ..     498     507 ..     497     508 .. 0.80
   9 !    7.0   0.0     0.005       5.6       5      29 ..     519     543 ..     516     545 .. 0.93
  10 !   16.7   1.0   4.2e-06    0.0048       3      34 .]     560     591 ..     559     591 .. 0.94
  11 ?   -2.9   0.0       6.7   7.5e+03      15      28 ..     595     608 ..     592     610 .. 0.87
  12 ?    2.6   0.1      0.12   1.3e+02      22      32 ..     687     697 ..     682     698 .. 0.84
  13 !   22.2   0.0   7.9e-08   8.8e-05       3      27 ..     756     780 ..     755     783 .. 0.94
  14 ?    5.6   0.2     0.013        15       3      32 ..     799     828 ..     797     830 .. 0.77
  15 ?   -2.4   0.0       4.4   4.9e+03       3      13 ..     833     843 ..     832     844 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.04
                HHHHHHHHHHHHTT-HHHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAle 22
                 ++ +l++ y + g +d A++
  CDO69163.1 53 WIWTRLAAEYWRRGLLDAAEK 73
                68*****************87 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.59
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 +G + +  g++d+A   ++ +L   P+n
  CDO69163.1 160 RGILQMTSGQWDDAGRTFDSVLAEKPTN 187
                 89999*********99999999999987 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 al +++ + + + ++ +Al+ ++k+L+lnPn+
  CDO69163.1 190 ALLGKAKIAYAKRQLPQALKLFQKVLQLNPNC 221
                 8999**************************96 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00094
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPn 33 
                 ++G+++  +    +A ++ ++ Le+nP 
  CDO69163.1 228 GIGLCLWGMDHKAKAKAAWQRSLEVNPG 255
                 689************************7 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.66
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALe 29 
                 l  +++++g+ + Al+  e+ ++
  CDO69163.1 309 LCELFLQKGQTKRALKLAERTIQ 331
                 6778999********99888776 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.057
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALeln 31 
                  + + G +++k g   +A  +++kA e +
  CDO69163.1 342 GYIRAGRVCHKEGSIRDAMGHFQKAKEAR 370
                 577789999****************8765 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 6.9
                 HHHHHHHHTT-HHHHH CS
       TPR_1   6 nlGnayfklgkydeAl 21 
                 +l+++ +++ ++  A+
  CDO69163.1 379 GLAQLQLRNDEFAAAI 394
                 5788888888888888 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 3.3
                 HHHHHHHHHS CS
       TPR_1  22 eyyekALeln 31 
                  +y++AL+ n
  CDO69163.1 498 RAYKQALRNN 507
                 589***9876 PP

  == domain 9  score: 7.0 bits;  conditional E-value: 0.005
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG++ +  g +deA   ye  L+
  CDO69163.1 519 NNLGALRHLEGHFDEARSLYETSLT 543
                 8********************9986 PP

  == domain 10  score: 16.7 bits;  conditional E-value: 4.2e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 +lynl+ +y  +g+  +A e+y+k L   P++
  CDO69163.1 560 ILYNLARVYEDQGEEAKAKEAYDKLLARHPEY 591
                 69***********************9999986 PP

  == domain 11  score: -2.9 bits;  conditional E-value: 6.7
                 T-HHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekAL 28 
                 +++++A e  ++AL
  CDO69163.1 595 NRHNDAHELLKQAL 608
                 6899999999**99 PP

  == domain 12  score: 2.6 bits;  conditional E-value: 0.12
                 HHHHHHHHHST CS
       TPR_1  22 eyyekALelnP 32 
                 e yekAL l+P
  CDO69163.1 687 EIYEKALHLDP 697
                 66********9 PP

  == domain 13  score: 22.2 bits;  conditional E-value: 7.9e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                 ++ n+G++y+   ++d A+e ye A
  CDO69163.1 756 VYTNMGHCYYARDEFDRAIESYETA 780
                 79*********************98 PP

  == domain 14  score: 5.6 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnP 32 
                 a+y ++n  ++ g  + Al+y +kAL l+P
  CDO69163.1 799 AWYAKANKDQSFGAMNTALQYAQKALHLCP 828
                 55555555566677889***********99 PP

  == domain 15  score: -2.4 bits;  conditional E-value: 4.4
                 HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfk 13 
                 +lyn++++ +k
  CDO69163.1 833 ILYNIAMIQHK 843
                 69*****9887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.47   5.2e+02       3      27 ..      54      78 ..      52      80 .. 0.87
   2 ?    3.9   0.0     0.061        69       6      34 .]     159     187 ..     155     187 .. 0.92
   3 !   19.6   0.1     6e-07   0.00067       3      34 .]     190     221 ..     188     221 .. 0.92
   4 !   12.5   0.0   0.00011      0.13       7      34 .]     229     256 ..     226     256 .. 0.94
   5 ?    2.9   0.3      0.13   1.5e+02       3      29 ..     305     331 ..     303     333 .. 0.86
   6 !    6.5   0.0    0.0096        11       2      32 ..     341     371 ..     340     373 .. 0.85
   7 ?   -1.7   0.0         4   4.5e+03       6      22 ..     379     395 ..     375     398 .. 0.79
   8 ?   -1.6   0.1       3.6     4e+03      16      29 ..     435     448 ..     431     449 .. 0.83
   9 ?   -2.6   0.0       7.7   8.6e+03      22      29 ..     498     505 ..     490     507 .. 0.67
  10 !    9.3   0.0    0.0011       1.3       5      29 ..     519     543 ..     515     546 .. 0.89
  11 !   19.9   1.9   4.6e-07   0.00051       3      33 ..     560     590 ..     559     591 .. 0.94
  12 ?    1.0   0.0      0.55   6.1e+02      15      29 ..     595     609 ..     590     614 .. 0.83
  13 ?    3.3   0.1     0.097   1.1e+02      17      32 ..     682     697 ..     682     699 .. 0.87
  14 !   16.6   0.0   5.3e-06    0.0059       3      28 ..     756     781 ..     754     786 .. 0.91
  15 ?    2.7   0.2      0.15   1.6e+02       3      32 ..     799     828 ..     792     828 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.47
       TPR_2  3 alynlGlayyklgdyeeAleafekA 27
                ++ +l+  y+++g ++ A++  + A
  CDO69163.1 54 IWTRLAAEYWRRGLLDAAEKIAQTA 78
                6999**************9977766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.061
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                  +G + + +g++++A + f+ +l+  P+n
  CDO69163.1 159 TRGILQMTSGQWDDAGRTFDSVLAEKPTN 187
                 689999******************99997 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 6e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 al   ++++y++ ++ +Al++f+k+l+l+Pn+
  CDO69163.1 190 ALLGKAKIAYAKRQLPQALKLFQKVLQLNPNC 221
                 677889************************95 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.00011
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 +Gl+++ +++ ++A++a++++le +P++
  CDO69163.1 229 IGLCLWGMDHKAKAKAAWQRSLEVNPGD 256
                 79************************86 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.13
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 a ++l ++ +++g+ ++Al++ e+ ++
  CDO69163.1 305 AANALCELFLQKGQTKRALKLAERTIQ 331
                 667899999************999776 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0096
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 +++ + G+++ k g   +A  +f+kA e   
  CDO69163.1 341 DGYIRAGRVCHKEGSIRDAMGHFQKAKEARK 371
                 578999*******************987665 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 4
       TPR_2   6 nlGlayyklgdyeeAle 22 
                  l+++ +++++++ A++
  CDO69163.1 379 GLAQLQLRNDEFAAAIH 395
                 58888899999999886 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 3.6
       TPR_2  16 dyeeAleafekAle 29 
                 + ++A+e+f+k+ +
  CDO69163.1 435 EKKRARELFDKVCK 448
                 5689******9876 PP

  == domain 9  score: -2.6 bits;  conditional E-value: 7.7
       TPR_2  22 eafekAle 29 
                 +a+++Al+
  CDO69163.1 498 RAYKQALR 505
                 56777775 PP

  == domain 10  score: 9.3 bits;  conditional E-value: 0.0011
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlG +    g+++eA+ ++e +l 
  CDO69163.1 519 NNLGALRHLEGHFDEARSLYETSLT 543
                 89*******************9986 PP

  == domain 11  score: 19.9 bits;  conditional E-value: 4.6e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +lynl+++y+ +g+ ++A+ea++k l+  P+
  CDO69163.1 560 ILYNLARVYEDQGEEAKAKEAYDKLLARHPE 590
                 69*************************9997 PP

  == domain 12  score: 1.0 bits;  conditional E-value: 0.55
       TPR_2  15 gdyeeAleafekAle 29 
                 +++++A+e++++Al+
  CDO69163.1 595 NRHNDAHELLKQALS 609
                 7899*********97 PP

  == domain 13  score: 3.3 bits;  conditional E-value: 0.097
       TPR_2  17 yeeAleafekAleldP 32 
                 +++ +e +ekAl ldP
  CDO69163.1 682 FQRSAEIYEKALHLDP 697
                 5788999********9 PP

  == domain 14  score: 16.6 bits;  conditional E-value: 5.3e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                 ++ n+G +yy+++++++A+e +e A 
  CDO69163.1 756 VYTNMGHCYYARDEFDRAIESYETAS 781
                 6889*******************995 PP

  == domain 15  score: 2.7 bits;  conditional E-value: 0.15
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 a+y+ ++     g  + Al++ +kAl l+P
  CDO69163.1 799 AWYAKANKDQSFGAMNTALQYAQKALHLCP 828
                 555555555555666679999999999988 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   1.4    0.0014       1.6       2      31 ..      53      82 ..      52      89 .. 0.87
   2 !   12.7   0.0   0.00016      0.18       3      43 ..     156     196 ..     154     197 .. 0.93
   3 ?    6.7   0.1     0.014        15       4      33 ..     191     220 ..     190     226 .. 0.87
   4 ?    6.9   0.0     0.011        13      18      42 ..     240     264 ..     229     265 .. 0.88
   5 ?    4.3   0.2     0.082        92       5      28 ..     307     330 ..     303     334 .. 0.84
   6 !    9.0   0.0    0.0025       2.8       5      44 .]     344     383 ..     341     383 .. 0.93
   7 !    7.7   0.1    0.0066       7.4       6      43 ..     379     418 ..     376     419 .. 0.89
   8 ?   -1.8   0.0       7.3   8.2e+03      14      30 ..     490     506 ..     485     511 .. 0.78
   9 ?    2.2   0.1      0.37   4.1e+02      13      31 ..     527     545 ..     515     557 .. 0.75
  10 !   16.2   0.3   1.2e-05     0.013       4      38 ..     561     595 ..     559     597 .. 0.91
  11 ?   -0.4   0.0       2.7     3e+03      16      39 ..     596     619 ..     595     622 .. 0.78
  12 ?    0.3   0.0       1.5   1.7e+03      18      42 ..     683     707 ..     677     709 .. 0.87
  13 ?    6.9   0.0     0.012        14       8      32 ..     761     785 ..     757     799 .. 0.75
  14 ?    3.6   0.1      0.14   1.5e+02      15      39 ..     811     835 ..     790     842 .. 0.70
  15 ?   -2.0   0.0       8.4   9.4e+03       8      31 ..     845     868 ..     838     870 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0014
      TPR_14  2 eallalaeallalGdpdeAiallrralala 31
                + + +la+ ++++G +d+A+++++ a a+ 
  CDO69163.1 53 WIWTRLAAEYWRRGLLDAAEKIAQTAEATL 82
                7899********************998875 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00016
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a l ++ + +++G++d+A + ++ +la  P++ +a+l  a+
  CDO69163.1 156 AVLTRGILQMTSGQWDDAGRTFDSVLAEKPTNVVALLGKAK 196
                 56889999****************************99987 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.014
      TPR_14   4 llalaeallalGdpdeAiallrralalaPd 33 
                 ll  a++ +a +++ +A++l++++l+l+P+
  CDO69163.1 191 LLGKAKIAYAKRQLPQALKLFQKVLQLNPN 220
                 55668888999*****************97 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.011
      TPR_14  18 deAiallrralalaPddaeawllla 42 
                 ++A a+ +r l+ +P+d+ a+lll+
  CDO69163.1 240 AKAKAAWQRSLEVNPGDWSAQLLLG 264
                 7899******************997 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.082
      TPR_14   5 lalaeallalGdpdeAiallrral 28 
                  al e++l+ G++++A++l++r +
  CDO69163.1 307 NALCELFLQKGQTKRALKLAERTI 330
                 578899**************9965 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0025
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                  ++++++   G  ++A+ ++++a ++  d+  a + laql
  CDO69163.1 344 IRAGRVCHKEGSIRDAMGHFQKAKEARKDNVLATIGLAQL 383
                 5789999*******************************97 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0066
      TPR_14   6 alaeallalGdpdeAiallrralal..aPddaeawlllaq 43 
                  la++ l+++++++Ai  l+  l++  +P+++e+  +la 
  CDO69163.1 379 GLAQLQLRNDEFAAAIHTLDSFLQTpnNPKSLELMAMLAS 418
                 599*********************65599*****999996 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 7.3
      TPR_14  14 lGdpdeAiallrralal 30 
                  + ++++++++++al+ 
  CDO69163.1 490 DESLETMERAYKQALRN 506
                 55678899999999975 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.37
      TPR_14  13 alGdpdeAiallrralala 31 
                   G +deA+ l++  l +a
  CDO69163.1 527 LEGHFDEARSLYETSLTHA 545
                 459**********998865 PP

  == domain 10  score: 16.2 bits;  conditional E-value: 1.2e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeaw 38 
                 l+ la++++ +G+ ++A ++++++la++P+  +++
  CDO69163.1 561 LYNLARVYEDQGEEAKAKEAYDKLLARHPEYVDVN 595
                 6779*************************998776 PP

  == domain 11  score: -0.4 bits;  conditional E-value: 2.7
      TPR_14  16 dpdeAiallrralalaPddaeawl 39 
                 ++ +A +ll++al+ + +++ ++ 
  CDO69163.1 596 RHNDAHELLKQALSSHSTNLNVRA 619
                 56799********98887776665 PP

  == domain 12  score: 0.3 bits;  conditional E-value: 1.5
      TPR_14  18 deAiallrralalaPddaeawllla 42 
                 +++++++++al l+P  a+a   la
  CDO69163.1 683 QRSAEIYEKALHLDPLCAVAAQGLA 707
                 678999*********9999988887 PP

  == domain 13  score: 6.9 bits;  conditional E-value: 0.012
      TPR_14   8 aeallalGdpdeAiallrralalaP 32 
                 ++ ++a++++d+Ai+ ++ a +++ 
  CDO69163.1 761 GHCYYARDEFDRAIESYETASKRFY 785
                 67799***************99874 PP

  == domain 14  score: 3.6 bits;  conditional E-value: 0.14
      TPR_14  15 GdpdeAiallrralalaPddaeawl 39 
                 G   +A++++++al l+P+d ++++
  CDO69163.1 811 GAMNTALQYAQKALHLCPWDKAILY 835
                 44556**************998875 PP

  == domain 15  score: -2.0 bits;  conditional E-value: 8.4
      TPR_14   8 aeallalGdpdeAiallrralala 31 
                 ae+l+     +++++ l+ra+++a
  CDO69163.1 845 AELLMSVPPAKRSLKELQRAIEQA 868
                 555555555678889999999875 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.2      0.78   8.8e+02       3      23 ..      58      78 ..      56      87 .. 0.75
   2 !   16.4   0.0   9.6e-06     0.011       2      65 ..     159     219 ..     158     220 .. 0.92
   3 ?    6.6   0.1     0.011        12      14      42 ..     240     265 ..     233     275 .. 0.87
   4 ?    2.1   0.3      0.27   3.1e+02      18      59 ..     290     328 ..     277     334 .. 0.79
   5 ?    5.0   0.0     0.035        39      12      57 ..     355     397 ..     352     407 .. 0.83
   6 !   12.6   0.1   0.00015      0.16      11      65 ..     491     546 ..     486     549 .. 0.89
   7 !   14.1   1.7   5.1e-05     0.057       1      39 [.     562     603 ..     562     612 .. 0.83
   8 ?    3.6   0.0     0.096   1.1e+02       6      28 ..     590     612 ..     589     621 .. 0.84
   9 ?    1.1   0.1      0.58   6.5e+02      12      45 ..     681     712 ..     676     724 .. 0.72
  10 !    8.7   0.1    0.0024       2.7       3      35 ..     760     791 ..     758     827 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.78
      TPR_16  3 laraalragdyddAaaaleaa 23
                la +++r+g  d+A++ +++a
  CDO69163.1 58 LAAEYWRRGLLDAAEKIAQTA 78
                677788888888888877766 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 9.6e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                  ++ + + +g++ddA + ++ +l+     P ++ All+++ +a+++  l+ A+ l+++ l+  p
  CDO69163.1 159 TRGILQMTSGQWDDAGRTFDSVLAEK---PTNVVALLGKAKIAYAKRQLPQALKLFQKVLQLNP 219
                 57888899******************...88888************************998887 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.011
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgd 42 
                 ++A aa+++ l+ +   P ++ A+lllg+
  CDO69163.1 240 AKAKAAWQRSLEVN---PGDWSAQLLLGL 265
                 689***********...***********7 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.27
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 ++ e+a  ++     + +A+++l +++l++g  ++A+ l ++
  CDO69163.1 290 RLIERAFNAN---QKNSAAANALCELFLQKGQTKRALKLAER 328
                 5667777777...78889999999999999999999977766 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.035
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                   +dA   ++ a +++    d++ A  +l+++ lr+ ++a+A+  +
  CDO69163.1 355 SIRDAMGHFQKAKEAR---KDNVLATIGLAQLQLRNDEFAAAIHTL 397
                 5688888999999999...99999******************9444 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 0.00015
      TPR_16  11 gdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraap 65 
                    +  ++a+++al+++ +s    ++  ++lg ++   g ++eA+ ly+  l++a+
  CDO69163.1 491 ESLETMERAYKQALRNNEVSGKtEPRLVNNLGALRHLEGHFDEARSLYETSLTHAA 546
                 5567789**********88888***************************9998886 PP

  == domain 7  score: 14.1 bits;  conditional E-value: 5.1e-05
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd......aaeAlll 39 
                 ++lar + ++g+ ++A +a++ +l+r+   P+      + +A+ l
  CDO69163.1 562 YNLARVYEDQGEEAKAKEAYDKLLARH---PEyvdvnrHNDAHEL 603
                 89*************************...995556666666655 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 0.096
      TPR_16   6 aalragdyddAaaaleaalkrdp 28 
                 ++++ ++  dA ++l++al +++
  CDO69163.1 590 EYVDVNRHNDAHELLKQALSSHS 612
                 68999**************9994 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.58
      TPR_16  12 dyddAaaaleaalkrdpssPd.aaeAllllgdaal 45 
                  +++ a+ +e al +d   P+ a++A+ l  ++a 
  CDO69163.1 681 GFQRSAEIYEKALHLD---PLcAVAAQGLAIVVAE 712
                 58999***********...9955555555555554 PP

  == domain 10  score: 8.7 bits;  conditional E-value: 0.0024
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaae 35 
                 +++ ++++ ++d+A++ +e+a kr++s+  +++
  CDO69163.1 760 MGHCYYARDEFDRAIESYETASKRFYSHQ-NVA 791
                 5677899999***************7775.444 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.43   4.8e+02       9      29 ..     163     183 ..     156     187 .. 0.77
   2 !   10.9   0.3   0.00053      0.59       2      32 ..     190     220 ..     189     220 .. 0.88
   3 ?    3.3   0.0      0.14   1.6e+02       6      29 ..     229     252 ..     227     256 .. 0.85
   4 ?    1.1   0.2      0.71     8e+02      10      27 ..     313     330 ..     306     331 .. 0.78
   5 ?   -2.1   0.0       7.2   8.1e+03      14      26 ..     354     366 ..     342     369 .. 0.53
   6 ?    1.4   0.0      0.55   6.2e+02       6      31 ..     380     404 ..     376     406 .. 0.82
   7 ?   -1.7   0.0       5.6   6.2e+03      15      26 ..     435     446 ..     421     448 .. 0.82
   8 ?   -0.4   0.0       2.1   2.3e+03       8      24 ..     523     539 ..     520     542 .. 0.76
   9 !   23.2   0.4   6.1e-08   6.8e-05       3      32 ..     561     590 ..     560     591 .. 0.96
  10 ?    3.9   0.1     0.087        98       9      28 ..     730     749 ..     729     750 .. 0.88
  11 !    9.0   0.1    0.0022       2.4       5      30 ..     759     784 ..     756     785 .. 0.90
  12 ?    0.5   0.0       1.1   1.2e+03       3      28 ..     834     866 ..     832     869 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerlike 29 
                 ++   g++d+A +++++++ e
  CDO69163.1 163 LQMTSGQWDDAGRTFDSVLAE 183
                 444447***********9987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00053
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 Al+  a+  ++  +  +Al++++++++  P+
  CDO69163.1 190 ALLGKAKIAYAKRQLPQALKLFQKVLQLNPN 220
                 8899998888856**************9997 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlike 29 
                 ++l++  ++ ++kA++a++r ++ 
  CDO69163.1 229 IGLCLWGMDHKAKAKAAWQRSLEV 252
                 899****999*********97665 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.71
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerli 27 
                 +++ g+t +Al++ er i
  CDO69163.1 313 FLQKGQTKRALKLAERTI 330
                 44457********99977 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 7.2
                 HHHHHHHHHHHHH CS
       TPR_6  14 gdtdkAlealerl 26 
                 g  ++A+  +++ 
  CDO69163.1 354 GSIRDAMGHFQKA 366
                 3555555555554 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 la+++++ ++ ++A+ +l+++++  P
  CDO69163.1 380 LAQLQLRNDEFAAAIHTLDSFLQT-P 404
                 677888878999*********987.5 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHH CS
       TPR_6  15 dtdkAlealerl 26 
                 ++ +A+e+++++
  CDO69163.1 435 EKKRARELFDKV 446
                 6789*****998 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   8 lsyrklgdtdkAleale 24 
                  ++   g  d+A+ ++e
  CDO69163.1 523 ALRHLEGHFDEARSLYE 539
                 44555679*******98 PP

  == domain 9  score: 23.2 bits;  conditional E-value: 6.1e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 ly+la+ y+ +g+ +kA+ea+++l+ ++P+
  CDO69163.1 561 LYNLARVYEDQGEEAKAKEAYDKLLARHPE 590
                 8****************************6 PP

  == domain 10  score: 3.9 bits;  conditional E-value: 0.087
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerlik 28 
                 ++++++++++Al+++ ++++
  CDO69163.1 730 AQKRMTNSREALDIFAKVRE 749
                 788999***********986 PP

  == domain 11  score: 9.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeY 30 
                 +++ +y++ ++ d+A+e +e   k++
  CDO69163.1 759 NMGHCYYARDEFDRAIESYETASKRF 784
                 799*****99**********988876 PP

  == domain 12  score: 0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHH.......HHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrkl.......gdtdkAlealerlik 28 
                 ly++a+ + k+         + ++l+ l+r i+
  CDO69163.1 834 LYNIAMIQHKAaellmsvPPAKRSLKELQRAIE 866
                 899999999965888888666666666666665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.058        65      44      75 ..      51      82 ..      42      84 .. 0.79
   2 !    6.8   0.0    0.0071         8      14      74 ..     165     217 ..     153     220 .. 0.61
   3 !    8.2   0.0    0.0027       3.1       6      74 ..     191     252 ..     186     254 .. 0.85
   4 !    7.5   0.2    0.0043       4.8       4      76 ..     304     371 ..     300     372 .. 0.86
   5 ?    1.7   0.1      0.28   3.2e+02      10      65 ..     347     394 ..     339     399 .. 0.58
   6 !   15.9   0.4   1.1e-05     0.012      20      74 ..     490     544 ..     486     547 .. 0.87
   7 !   24.1   2.7   2.9e-08   3.3e-05       7      75 ..     519     588 ..     515     590 .. 0.85
   8 ?    2.0   0.1      0.23   2.6e+02      58      72 ..     594     608 ..     590     611 .. 0.85
   9 ?    0.9   0.0      0.51   5.7e+02      26      54 ..     682     709 ..     680     713 .. 0.86
  10 !   18.3   0.0   1.9e-06    0.0021      27      74 ..     738     783 ..     735     786 .. 0.92
  11 ?   -0.7   0.1       1.6   1.8e+03      25      56 ..     812     842 ..     797     859 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.058
      TPR_12 44 tattlrnLgrlyralgryeeAlelleealaia 75
                 +++   L+  y+++g +++A+++ + a a +
  CDO69163.1 51 KVWIWTRLAAEYWRRGLLDAAEKIAQTAEATL 82
                56778889999999999999999999887765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0071
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +  g++d+A + ++ +l+       p++   + +l + + + +a  ++ +Al+l++++l++
  CDO69163.1 165 MTSGQWDDAGRTFDSVLAEK-----PTN---VVALLGKAKIAYAKRQLPQALKLFQKVLQL 217
                 55677777777777774444.....554...444444444444555888888888888876 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0027
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 l   a + ++  ++ +Al+l++k+l++      p+       ++++g +++ +++ ++A ++ +++l++
  CDO69163.1 191 LLGKAKIAYAKRQLPQALKLFQKVLQLN-----PNC--RPDPRIGIGLCLWGMDHKAKAKAAWQRSLEV 252
                 4478999999999***********9999.....776..7888999999999999999999988888875 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0043
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a+n l ++ ++ g+   Al+l e+ ++ a     + +  ++  ++  gr++++ g  ++A  ++++a ++++
  CDO69163.1 304 AAANALCELFLQKGQTKRALKLAERTIQFA-----DVKGILCDGYIRAGRVCHKEGSIRDAMGHFQKAKEARK 371
                 466689999*****************9999.....33447999999999999999999999999999988876 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.28
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                 + v+++ g   +A  +++ka e++     +d+   + + ++L++l+++ +++++A+
  CDO69163.1 347 GRVCHKEGSIRDAMGHFQKAKEAR-----KDN---VLATIGLAQLQLRNDEFAAAI 394
                 555555555555556666665555.....444...445566666666666666665 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 1.1e-05
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 de+le  e+a+ +a r  +     + +  +nLg l ++ g+++eA++l+e +l  
  CDO69163.1 490 DESLETMERAYKQALRNNEVSGKTEPRLVNNLGALRHLEGHFDEARSLYETSLTH 544
                 688888888888887776777778999*************************976 PP

  == domain 7  score: 24.1 bits;  conditional E-value: 2.9e-08
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealaia 75 
                 nnl+a+ +  g +deA++l+e++l  a  l      +   ++l+nL+r+y+ +g+ ++A e++ + la+ 
  CDO69163.1 519 NNLGALRHLEGHFDEARSLYETSLTHAAGLDSSAAeAMSTSILYNLARVYEDQGEEAKAKEAYDKLLARH 588
                 59*************************9994333324444679**********************99975 PP

  == domain 8  score: 2.0 bits;  conditional E-value: 0.23
      TPR_12  58 lgryeeAlelleeal 72 
                  +r+ +A+ell++al
  CDO69163.1 594 VNRHNDAHELLKQAL 608
                 589**********99 PP

  == domain 9  score: 0.9 bits;  conditional E-value: 0.51
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrl 54 
                 ++++ ei++++l +  pl a + ++L+++
  CDO69163.1 682 FQRSAEIYEKAL-HLDPLCAVAAQGLAIV 709
                 7999****8887.7889999999999987 PP

  == domain 10  score: 18.3 bits;  conditional E-value: 1.9e-06
      TPR_12  27 ekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 ++al+i+ ++   ++ +  +++ n+g +y+a+++++ A+e +e a ++
  CDO69163.1 738 REALDIFAKV--RESINDGSVYTNMGHCYYARDEFDRAIESYETASKR 783
                 79********..99*****************************99765 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 1.6
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyr 56 
                   ++al+ a+++l +  p+  ++l+n++++++
  CDO69163.1 812 AMNTALQYAQKAL-HLCPWDKAILYNIAMIQH 842
                 4455555555554.455666666666666655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.34   3.8e+02       3      26 ..      54      77 ..      54      79 .. 0.88
   2 ?    5.1   0.1     0.029        32       5      34 .]     192     221 ..     189     221 .. 0.86
   3 ?    4.0   0.0     0.065        72       7      33 ..     229     255 ..     226     256 .. 0.93
   4 ?    4.2   0.0     0.054        60       2      23 ..     348     369 ..     343     373 .. 0.85
   5 ?   -2.1   0.1       5.7   6.4e+03      17      28 ..     493     504 ..     479     508 .. 0.66
   6 ?    2.9   0.0      0.15   1.6e+02       4      28 ..     518     542 ..     515     543 .. 0.87
   7 !   17.6   1.0   2.9e-06    0.0032       3      29 ..     560     586 ..     558     591 .. 0.90
   8 ?    0.5   0.0      0.85   9.6e+02      19      32 ..     684     697 ..     682     697 .. 0.84
   9 !   13.3   0.0   6.5e-05     0.073       3      29 ..     756     782 ..     754     784 .. 0.93
  10 ?   -1.8   0.1       4.6   5.1e+03       4      30 ..     800     826 ..     798     828 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.34
                HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyek 26
                ++ +l+  y+  g +++A++  + 
  CDO69163.1 54 IWTRLAAEYWRRGLLDAAEKIAQT 77
                5999***************98765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.029
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + +++i   + ++ +A + ++k+l+l+p++
  CDO69163.1 192 LGKAKIAYAKRQLPQALKLFQKVLQLNPNC 221
                 567888888889999*************97 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.065
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                 +g++++ +  + +Ak++ ++ le +p 
  CDO69163.1 229 IGLCLWGMDHKAKAKAAWQRSLEVNPG 255
                 899*********************995 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.054
                 CHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkey 23 
                 +++++ gsi + +g +++Ake+
  CDO69163.1 348 RVCHKEGSIRDAMGHFQKAKEA 369
                 6888999999999999999985 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 5.7
                 HHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekal 28 
                 +e ++ +y++al
  CDO69163.1 493 LETMERAYKQAL 504
                 455566666666 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.15
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekal 28 
                  +nlg + +  g ++eA + ye  l
  CDO69163.1 518 VNNLGALRHLEGHFDEARSLYETSL 542
                 5799999999***********9876 PP

  == domain 7  score: 17.6 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 ++ynl+++y+++g+  +Ake+y k l 
  CDO69163.1 560 ILYNLARVYEDQGEEAKAKEAYDKLLA 586
                 79**********************986 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleldp 32 
                  + e yekal ldp
  CDO69163.1 684 RSAEIYEKALHLDP 697
                 56799*****9998 PP

  == domain 9  score: 13.3 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +y n+g++y    +++ A+e+ye a +
  CDO69163.1 756 VYTNMGHCYYARDEFDRAIESYETASK 782
                 8**********************9976 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 4.6
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                 +y +++  ++ g ++ A +y +kal l
  CDO69163.1 800 WYAKANKDQSFGAMNTALQYAQKALHL 826
                 555555555566778899999999865 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.2   3.5e+03       8      32 ..     163     185 ..     160     188 .. 0.75
   2 ?   -1.4   0.0       2.8   3.1e+03      13      28 ..     202     217 ..     190     222 .. 0.73
   3 ?   -0.4   0.1       1.4   1.6e+03       7      24 ..     311     328 ..     305     334 .. 0.82
   4 ?    1.2   0.1      0.41   4.6e+02       7      32 ..     355     389 ..     345     407 .. 0.67
   5 !   12.0   0.1   0.00015      0.16       3      26 ..     519     542 ..     517     551 .. 0.89
   6 !   11.2   0.2   0.00026       0.3       2      27 ..     561     586 ..     560     590 .. 0.88
   7 ?   -0.1   0.0       1.1   1.2e+03       9      30 ..     591     612 ..     591     618 .. 0.81
   8 ?    4.4   0.0      0.04        45      15      33 ..     682     698 ..     679     700 .. 0.89
   9 !   11.4   0.1   0.00023      0.26       2      27 ..     757     780 ..     756     791 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.2
       TPR_7   8 lysrlGdyeeAielyeqsLaltkdp 32 
                 l+   G++++A + +    +l++ p
  CDO69163.1 163 LQMTSGQWDDAGRTFDS--VLAEKP 185
                 56678******999988..666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
       TPR_7  13 GdyeeAielyeqsLal 28 
                 ++  +A++l++++L+l
  CDO69163.1 202 RQLPQALKLFQKVLQL 217
                 66679*******7765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.4
       TPR_7   7 rlysrlGdyeeAielyeq 24 
                 +l+ + G++++A++l e+
  CDO69163.1 311 ELFLQKGQTKRALKLAER 328
                 678899*******99888 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.41
       TPR_7   7 rlysrlGdyeeAielyeq.........sLaltkdp 32 
                 +++ ++G++++A e  +          +L+l++d+
  CDO69163.1 355 SIRDAMGHFQKAKEARKDnvlatiglaQLQLRNDE 389
                 55666666666666555555555555555555554 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00015
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL 26 
                 +nL+ l++ +G+++eA +lye sL
  CDO69163.1 519 NNLGALRHLEGHFDEARSLYETSL 542
                 8*********************77 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.00026
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 L+nLar+y+++G+ ++A e y ++La
  CDO69163.1 561 LYNLARVYEDQGEEAKAKEAYDKLLA 586
                 89*********************665 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.1
       TPR_7   9 ysrlGdyeeAielyeqsLaltk 30 
                 y++++++ +A el++q+L  ++
  CDO69163.1 591 YVDVNRHNDAHELLKQALSSHS 612
                 789999**********886665 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.04
       TPR_7  15 yeeAielyeqsLaltkdpe 33 
                 +++ +e+ye+  al+ dp+
  CDO69163.1 682 FQRSAEIYEK--ALHLDPL 698
                 7899******..9999986 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 0.00023
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 + n++++y ++ ++++Aie ye   a
  CDO69163.1 757 YTNMGHCYYARDEFDRAIESYET--A 780
                 88********************8..4 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.28   3.1e+02       4      54 ..     169     220 ..     166     238 .. 0.77
   2 !   15.8   0.4   1.1e-05     0.012      11      81 ..     291     365 ..     289     366 .. 0.86
   3 !   11.2   0.0   0.00029      0.32       4      64 ..     355     415 ..     352     421 .. 0.86
   4 ?    0.3   0.9      0.77   8.6e+02      17      49 ..     552     584 ..     528     608 .. 0.69
   5 ?   -0.7   0.0       1.6   1.8e+03      37      62 ..     595     621 ..     590     632 .. 0.73
   6 !    9.5   0.4     0.001       1.1      21      65 ..     749     797 ..     731     807 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.28
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnsk 54 
                 ++++A   ++ +la ++ +  +++ +A+  y   q  +A++l++k  +ln++
  CDO69163.1 169 QWDDAGRTFDSVLAEKPTNVVALLGKAKIAYAKRQLPQALKLFQKVlQLNPN 220
                 6666667777777555555555555799999999999999999999777665 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.1e-05
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT..SHHHC-HHHH.HHHH.HHHHHTT-HHHHHHHH-S CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAyellrka..klnskslgcr.ylfA.qcllkLkkyeeAiaaLek 81 
                 l+er+++a+++++ +a +l++ +++ gq krA++l++++    + k + c  y+ A +++ k +++ +A  +++k
  CDO69163.1 291 LIERAFNANQKNSAAANALCELFLQKGQTKRALKLAERTiqFADVKGILCDgYIRAgRVCHKEGSIRDAMGHFQK 365
                 689***********************************9655566666664577777999999999999999887 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00029
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAq 64 
                  +++A+ ++ ++ +a +++  ++  lA+  ++n ++  A++ l+++ + +++++++ l+A 
  CDO69163.1 355 SIRDAMGHFQKAKEARKDNVLATIGLAQLQLRNDEFAAAIHTLDSFLQTPNNPKSLELMAM 415
                 56788888888887888888888889********************99999******9994 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.77
                 .HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  17 aaetespedayllAlclylngqykrAyellrka 49 
                 aae+ s + +y lA ++  +g+  +A e ++k+
  CDO69163.1 552 AAEAMSTSILYNLARVYEDQGEEAKAKEAYDKL 584
                 467777777888888888888866666655555 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.6
                 T-HHHHHHHHHCT.SHHHC-HHHHHHH CS
      ANAPC3  37 gqykrAyellrka.klnskslgcrylf 62 
                 ++++ A+ell++a  + s++l++r  +
  CDO69163.1 595 NRHNDAHELLKQAlSSHSTNLNVRAFY 621
                 678899999999977777777766555 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.001
                 --HHH..HHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHH CS
      ANAPC3  21 esped..ayll.AlclylngqykrAyellrka.klnskslgcrylfAqc 65 
                 es +d  +y   + c+y + +++rA+e +++a k   +++++++l+  c
  CDO69163.1 749 ESINDgsVYTNmGHCYYARDEFDRAIESYETAsKRFYSHQNVAVLLCLC 797
                 5555532555259*******************99999999999998777 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.065        72       5      33 ..     180     208 ..     176     209 .. 0.85
   2 ?   -0.4   0.0       1.7   1.9e+03       1      11 [.     210     220 ..     210     220 .. 0.94
   3 ?    2.2   0.0      0.26   2.9e+02       3      21 ..     247     265 ..     245     281 .. 0.80
   4 ?    5.4   0.6     0.026        29       2      33 ..     292     323 ..     291     324 .. 0.91
   5 ?    0.7   0.1       0.8     9e+02       2      33 ..     363     394 ..     362     395 .. 0.84
   6 ?    1.0   0.0      0.61   6.9e+02      10      24 ..     404     418 ..     401     441 .. 0.51
   7 ?    1.2   0.0      0.55   6.1e+02       2      33 ..     500     535 ..     499     536 .. 0.84
   8 ?    6.5   0.0     0.011        12      15      34 .]     560     579 ..     557     579 .. 0.90
   9 ?    1.2   0.0      0.56   6.3e+02       1      15 [.     580     594 ..     580     596 .. 0.91
  10 ?   -0.0   0.0       1.4   1.5e+03       1      20 [.     688     707 ..     688     709 .. 0.80
  11 !    6.9   0.0    0.0082       9.2      11      34 .]     752     775 ..     750     775 .. 0.93
  12 ?    4.8   0.0     0.039        44       2      26 ..     820     844 ..     819     866 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.065
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                 +l+  P+n++a+  +A++ + + +l +A+
  CDO69163.1 180 VLAEKPTNVVALLGKAKIAYAKRQLPQAL 208
                 67889*************99999988886 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.7
      TPR_17   1 lylkaleldPn 11 
                 l++k+l+l+Pn
  CDO69163.1 210 LFQKVLQLNPN 220
                 79********8 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.26
      TPR_17   3 lkaleldPnnadaynnLAe 21 
                 +++le +P ++ a  +L+ 
  CDO69163.1 247 QRSLEVNPGDWSAQLLLGL 265
                 89********999998886 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.026
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                  ++a   + +n+ a n L el+l++G++++A+
  CDO69163.1 292 IERAFNANQKNSAAANALCELFLQKGQTKRAL 323
                 57888899***********************7 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.8
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++ka e  ++n+ a   LA+l+l+n +++ A+
  CDO69163.1 363 FQKAKEARKDNVLATIGLAQLQLRNDEFAAAI 394
                 56666778899999999********9999886 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.61
      TPR_17  10 PnnadaynnLAelll 24 
                 Pnn++++ ++A l +
  CDO69163.1 404 PNNPKSLELMAMLAS 418
                 555555555555443 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.55
      TPR_17   2 ylkaleld....PnnadaynnLAelllknGdlmtAr 33 
                 y++al+++    ++ + + nnL+ l +  G +++Ar
  CDO69163.1 500 YKQALRNNevsgKTEPRLVNNLGALRHLEGHFDEAR 535
                 8888888877777778999***********999998 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.011
      TPR_17  15 aynnLAelllknGdlmtArq 34 
                  ++nLA++++ +G+ ++A++
  CDO69163.1 560 ILYNLARVYEDQGEEAKAKE 579
                 68************999985 PP

  == domain 9  score: 1.2 bits;  conditional E-value: 0.56
      TPR_17   1 lylkaleldPnnada 15 
                 +y k l+++P ++d+
  CDO69163.1 580 AYDKLLARHPEYVDV 594
                 59**********997 PP

  == domain 10  score: -0.0 bits;  conditional E-value: 1.4
      TPR_17   1 lylkaleldPnnadaynnLA 20 
                 +y+kal ldP  a+a + LA
  CDO69163.1 688 IYEKALHLDPLCAVAAQGLA 707
                 5*********8777777666 PP

  == domain 11  score: 6.9 bits;  conditional E-value: 0.0082
      TPR_17  11 nnadaynnLAelllknGdlmtArq 34 
                 n+  +y+n++ +++ + ++++A++
  CDO69163.1 752 NDGSVYTNMGHCYYARDEFDRAIE 775
                 7889******************86 PP

  == domain 12  score: 4.8 bits;  conditional E-value: 0.039
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                  +kal l+P +   ++n A +++k+
  CDO69163.1 820 AQKALHLCPWDKAILYNIAMIQHKA 844
                 69******************99854 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3      0.13   1.4e+02       6      21 ..      57      72 ..      52      77 .. 0.83
   2 ?    0.7   0.0       1.1   1.2e+03       4      25 ..     157     178 ..     154     179 .. 0.83
   3 ?   -2.0   0.3       7.5   8.5e+03       3      26 .]     305     328 ..     304     328 .. 0.86
   4 ?    4.4   0.2     0.066        74       2      20 ..     375     393 ..     374     398 .. 0.92
   5 !    7.7   0.0    0.0059       6.6       5      25 ..     519     539 ..     515     540 .. 0.87
   6 ?    5.9   0.0     0.022        25       4      23 ..     561     580 ..     559     583 .. 0.86
   7 ?   -0.8   0.0       3.2   3.6e+03       5      20 ..     758     773 ..     755     778 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.13
       TPR_4  6 aLArallalGdldeAr 21
                 LA  ++++G ld+A+
  CDO69163.1 57 RLAAEYWRRGLLDAAE 72
                69999**********8 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
       TPR_4   4 llaLArallalGdldeAralle 25 
                  l ++ ++   G++d+A ++++
  CDO69163.1 157 VLTRGILQMTSGQWDDAGRTFD 178
                 5778999999*******99875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 7.5
       TPR_4   3 allaLArallalGdldeAraller 26 
                 a+ aL+++ l+ G+  +A+ l+er
  CDO69163.1 305 AANALCELFLQKGQTKRALKLAER 328
                 667899999999***999999987 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.066
       TPR_4   2 rallaLArallalGdldeA 20 
                  a+++LA+++l+  ++++A
  CDO69163.1 375 LATIGLAQLQLRNDEFAAA 393
                 589**************99 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0059
       TPR_4   5 laLArallalGdldeAralle 25 
                  +L+ + ++ G++deAr l e
  CDO69163.1 519 NNLGALRHLEGHFDEARSLYE 539
                 589**************9987 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.022
       TPR_4   4 llaLArallalGdldeAral 23 
                 l++LAr++ ++G+ + A ++
  CDO69163.1 561 LYNLARVYEDQGEEAKAKEA 580
                 79***********9999776 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 3.2
       TPR_4   5 laLArallalGdldeA 20 
                  +++  ++a+ ++d+A
  CDO69163.1 758 TNMGHCYYARDEFDRA 773
                 688999********99 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0021       2.3       3      26 ..     197     220 ..     195     225 .. 0.91
   2 ?   -0.2   0.0      0.74   8.3e+02      13      36 ..     242     265 ..     240     265 .. 0.88
   3 ?    4.1   0.0     0.034        38       1      41 [.     347     387 ..     347     388 .. 0.93
   4 ?    1.8   0.0      0.17     2e+02      29      42 .]     559     572 ..     555     572 .. 0.91
   5 ?    0.6   0.0      0.42   4.7e+02       3      30 ..     567     594 ..     565     606 .. 0.89
   6 ?   -1.4   0.0       1.8     2e+03       4      21 ..     591     608 ..     589     614 .. 0.88
   7 ?   -0.9   0.0       1.2   1.3e+03      17      25 ..     689     697 ..     684     697 .. 0.89
   8 !    9.7   0.1   0.00058      0.65       1      22 [.     761     782 ..     761     783 .. 0.92
   9 ?    1.3   0.2      0.26   2.9e+02      18      40 ..     821     843 ..     811     844 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPd 26 
                 + y++ ++++A++ ++k l+l+P+
  CDO69163.1 197 IAYAKRQLPQALKLFQKVLQLNPN 220
                 5588889****************8 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.74
      TPR_11  13 AieaYkkAlkldPdnaeayynLGl 36 
                 A +a+++ l+ +P + +a + LGl
  CDO69163.1 242 AKAAWQRSLEVNPGDWSAQLLLGL 265
                 6689***********999999995 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.034
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G+++++ G + +A+ +++kA + + dn+ a  +L+++++++
  CDO69163.1 347 GRVCHKEGSIRDAMGHFQKAKEARKDNVLATIGLAQLQLRN 387
                 899*************************9999999988776 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.17
      TPR_11  29 eayynLGlayykqG 42 
                 +++ynL+ +y  qG
  CDO69163.1 559 SILYNLARVYEDQG 572
                 699*********99 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.42
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaea 30 
                 +y +qG+  +A eaY k l+  P+++++
  CDO69163.1 567 VYEDQGEEAKAKEAYDKLLARHPEYVDV 594
                 67799999***********999999986 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.8
      TPR_11   4 yyeqGkyeeAieaYkkAl 21 
                 y++ ++ ++A e +k+Al
  CDO69163.1 591 YVDVNRHNDAHELLKQAL 608
                 8888999**********9 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.2
      TPR_11  17 YkkAlkldP 25 
                 Y+kAl ldP
  CDO69163.1 689 YEKALHLDP 697
                 9*******9 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00058
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+ yy++ +++ Aie+Y++A k
  CDO69163.1 761 GHCYYARDEFDRAIESYETASK 782
                 778****************975 PP

  == domain 9  score: 1.3 bits;  conditional E-value: 0.26
      TPR_11  18 kkAlkldPdnaeayynLGlayyk 40 
                 +kAl l+P +  ++yn++ +++k
  CDO69163.1 821 QKALHLCPWDKAILYNIAMIQHK 843
                 89***************988886 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.7     0.022        24       8      28 ..      58      78 ..      56      88 .. 0.86
   2 ?    0.5   0.0      0.53   5.9e+02      13      31 ..     199     217 ..     195     218 .. 0.83
   3 ?    0.3   0.1      0.62     7e+02      14      30 ..     315     331 ..     305     333 .. 0.88
   4 ?   -1.8   0.1       2.8   3.1e+03      23      36 ..     487     500 ..     483     503 .. 0.81
   5 !    6.4   0.0    0.0078       8.7       6      29 ..     519     542 ..     518     543 .. 0.95
   6 !    9.6   0.3   0.00077      0.86       3      32 ..     559     588 ..     558     588 .. 0.92
   7 !    6.3   0.0    0.0084       9.4      12      32 ..     591     611 ..     591     616 .. 0.89
   8 ?   -1.4   0.0       2.2   2.5e+03      26      36 ..     683     693 ..     682     697 .. 0.56
   9 ?    5.7   0.0     0.013        15       4      28 ..     756     780 ..     754     783 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.022
      TPR_10  8 LanalrqrgrydeAealleea 28
                La+ +++rg +d+Ae++++ a
  CDO69163.1 58 LAAEYWRRGLLDAAEKIAQTA 78
                9999*************7765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.53
      TPR_10  13 rqrgrydeAealleealai 31 
                 ++ +++ +A++l++++l++
  CDO69163.1 199 YAKRQLPQALKLFQKVLQL 217
                 67788999********985 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.62
      TPR_10  14 qrgrydeAealleeala 30 
                 q g+ ++A++l+e++++
  CDO69163.1 315 QKGQTKRALKLAERTIQ 331
                 679999********997 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.8
      TPR_10  23 alleealairrrll 36 
                  +++e+l++ +r++
  CDO69163.1 487 LYQDESLETMERAY 500
                 5799*******997 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0078
      TPR_10   6 nNLanalrqrgrydeAealleeal 29 
                 nNL+++ +  g +deA+ l+e +l
  CDO69163.1 519 NNLGALRHLEGHFDEARSLYETSL 542
                 9********************998 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.00077
      TPR_10   3 sslnNLanalrqrgrydeAealleealair 32 
                 s+l NLa+++ ++g+ ++A + +++ la++
  CDO69163.1 559 SILYNLARVYEDQGEEAKAKEAYDKLLARH 588
                 5799********************999975 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0084
      TPR_10  12 lrqrgrydeAealleealair 32 
                 + +++r+++A +ll++al+ +
  CDO69163.1 591 YVDVNRHNDAHELLKQALSSH 611
                 6689**************865 PP

  == domain 8  score: -1.4 bits;  conditional E-value: 2.2
      TPR_10  26 eealairrrll 36 
                 +++ +i++++l
  CDO69163.1 683 QRSAEIYEKAL 693
                 45556666655 PP

  == domain 9  score: 5.7 bits;  conditional E-value: 0.013
      TPR_10   4 slnNLanalrqrgrydeAealleea 28 
                  ++N+++ +++r ++d+A + +e a
  CDO69163.1 756 VYTNMGHCYYARDEFDRAIESYETA 780
                 699****************999987 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.7      0.75   8.4e+02      61     103 ..      61     104 ..      56     109 .. 0.68
   2 ?   10.2   0.0   0.00057      0.64      61     104 ..     156     199 ..     147     202 .. 0.92
   3 ?   -0.6   0.2       1.4   1.5e+03      52      87 ..     298     331 ..     285     338 .. 0.64
   4 ?    1.0   0.0      0.43   4.8e+02      71     102 ..     352     383 ..     342     387 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.75
      HemY_N  61 ealseGlialaeGdfarAekaaakaaklsea.pllayllaAqAa 103
                 e  ++Gl++ ae  +++Ae  ++++ + ++  p+   l+  q a
  CDO69163.1  61 EYWRRGLLDAAEKIAQTAEATLKANGAEASLpPVCSFLVNLQIA 104
                 567899*******9999999887777666665554444444443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00057
      HemY_N  61 ealseGlialaeGdfarAekaaakaaklseapllayllaAqAaq 104
                 + l++G++++ +G++ +A + + + ++ +++ ++a+l +A+ a 
  CDO69163.1 156 AVLTRGILQMTSGQWDDAGRTFDSVLAEKPTNVVALLGKAKIAY 199
                 5699************************************9986 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.4
      HemY_N  52 rrrrerkarealseGlialaeGdfarAekaaakaak 87 
                 +++++ +a +al e  + l++G+ +rA k+a +  +
  CDO69163.1 298 ANQKNSAAANALCE--LFLQKGQTKRALKLAERTIQ 331
                 34444444444443..44679999999999998755 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.43
      HemY_N  71 aeGdfarAekaaakaaklseapllayllaAqA 102
                  eG  ++A+ +++ka++  ++ +la +  Aq 
  CDO69163.1 352 KEGSIRDAMGHFQKAKEARKDNVLATIGLAQL 383
                 69999**************9999999998885 PP

>> Dec-1  Dec-1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.6     0.014        15       8      26 ..     914     933 ..     903     934 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
       Dec-1   8 qRQW.sEDQAKiqQqqqmmQ 26 
                 qRQW +E QAKi+ ++q  Q
  CDO69163.1 914 QRQWeAEAQAKIEAARQRRQ 933
                 9***99********999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2169  (0.120977); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.52
# Mc/sec: 6280.00
//
Query:       CDO69164.1  [L=515]
Description: hypothetical protein BN946_scf185042.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.3   0.0    3.1e-10   40.3   0.0    1.5  1  SWIRM     SWIRM domain


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.7e-14   3.1e-10       9      86 ..     361     427 ..     356     429 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.7e-14
       SWIRM   9 dslhpiEkellselfngkdktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGl 86 
                 + l+p+E+ l+s+l+    + p+ Yl i+++++++y ++  + l++ ea++++k      idvn++sr+++fL + G+
  CDO69164.1 361 HLLTPEEQTLCSQLR----ILPKPYLVIKETLVREYARRGGK-LRRREARDLVK------IDVNKTSRVWDFLVQAGF 427
                 789************....*******************9655.******88888......8**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3552.05
//
Query:       CDO69165.1  [L=357]
Description: hypothetical protein BN946_scf185042.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-49  168.2   0.1    9.8e-47  159.8   0.1    2.0  1  PALP            Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.026   15.0   0.0      0.055   13.9   0.0    1.5  1  NAD_binding_7   Putative NAD(P)-binding
       0.13   12.6   0.1       0.31   11.4   0.1    1.6  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.1   1.6e-50   9.8e-47      31     294 .]       1     332 [.       1     332 [. 0.87

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.6e-50
                 GSTTSBTTHHHHHHHHHHHHTT.....TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEE..CCH.HHHHHHHHHHH CS
        PALP  31 lnptgSfKdRgaeyllarlkeg.....tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvev..ggd.ydeavaaaael 121
                 +np+gS+KdR a  ++++++e        + +++e++ G +g+++A +a++ G+++ti +p+d+ +ekv++l +lGa+v++v    + +d  +++a+e 
  CDO69165.1   1 MNPGGSVKDRVALRMIEDAEERgllhpHTGSRIFEGTVGSTGISIATIARAKGYEATIIMPDDVAEEKVKALLALGAQVERVrpA-SiVDKKQNLARER 98 
                 59****************77777888889*****************************************************852.3466666666666 PP

                 HHH....................................................STTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SS CS
        PALP 122 aae....................................................gegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGg 167
                 a++                                                    ++  ++++qf+n  +  + y  +g+Ei++q+ g +da+v ++G+
  CDO69165.1  99 AKNfgsepdpahphgkhrghliptasssvvvtttaddaladnrlmspkeerefalKPRGFFADQFENRSNYYAhYDGTGPEIWRQTSGWLDAFVSGAGT 197
                 66666667777777777777777888888888888888888888888888889999**************9999************************* PP

                 SHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B..........SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHH CS
        PALP 168 GgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvpvs.........dtiadglavgspselafelldrlvdeivtvsdeealeamrllar 257
                 Gg+iaGi+++lk++++d+ v  ++pegs  +++    g   + +++         dt ++g++++   + +fel+   +d++  v+d+ea+++ r l +
  CDO69165.1 198 GGTIAGIGQYLKSKKQDIVVALADPEGSGLYNKVK-YGVMFDKKEAegtkrrhqvDTVVEGIGIN-RLTHNFELALPIIDDAFRVTDAEAVAMSRYLVQ 294
                 **************************888888777.6666666666777777788**********.666666666666677777*************** PP

                 HHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEEEE-B CS
        PALP 258 regivvepssaaalaal.klreagelkegdrvvviltg 294
                 ++g++++ ssa++l  + kl+++   ++g+r+v+il++
  CDO69165.1 295 HDGLFLGSSSACNLVTCiKLAKKMGWRDGERIVTILND 332
                 ***********************************976 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.2e-06     0.055       7      76 ..      53     139 ..      48     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.2e-06
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekd...................legadlviaatddrelne 76 
                    g +  ++   +vA++kv+ ll+ ga+v  v p+  ++++++ +la+e +++                     +   +v+++t d++l +
     CDO69165.1  53 GYEATIIMPDDVAEEKVKALLALGAQVERVRPA--SIVDKKQNLARERAKNFgsepdpahphgkhrghlipTASSSVVVTTTADDALAD 139
                    55667777789**********************..677777777776654333345567777777777766556779999998888765 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.2e-05      0.31      49      70 ..     188     209 ..     182     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.2e-05
  GHMP_kinases_C  49 lgaklsGaGgGptvfalfkdkd 70 
                     l a++sGaG G+t++++++   
      CDO69165.1 188 LDAFVSGAGTGGTIAGIGQYLK 209
                     5699*************95444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2270.70
//
Query:       CDO69166.1  [L=107]
Description: hypothetical protein BN946_scf185042.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-17   63.5   0.0    2.7e-17   63.3   0.0    1.0  1  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   1.5e-21   2.7e-17      34     115 ..      14      99 ..       7     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 1.5e-21
                    SSS-SEETTEES----T.....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHHHHTT-E...EE.ES-HHHHH CS
  CoA_binding_2  34 npkeeeilgekvyaslae.dpepvdlvdvftppeatpeivkealalgakavwlqpgsedeeaaelaeeagir...vvgdrCilveg 115
                      ke+e++g k ++++a+ +  +  +v ++tpp++t++i+++a+alg++a+wlqpg+ede+++++ +e+g++   + g  Cilveg
     CDO69166.1  14 SQKEDELEGLKTVRTIADlPAPAETSVHIITPPKVTLSILEQAKALGVPALWLQPGAEDEAVIAYIKENGLEdktIYGGPCILVEG 99 
                    5689*************87777777*******************************************7775555999******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 766.12
//
Query:       CDO69167.1  [L=397]
Description: hypothetical protein BN946_scf185042.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   13.1   0.0        1.9    8.0   0.0    2.2  2  FBP_C     FBP C-terminal treble-clef zinc-finger


Domain annotation for each model (and alignments):
>> FBP_C  FBP C-terminal treble-clef zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0    0.0046        82      52      87 ..     266     301 ..     257     319 .. 0.77
   2 ?    8.0   0.0   0.00011       1.9      64     111 ..     342     389 ..     328     394 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0046
       FBP_C  52 ddelvGvaLraaeaakagarrrsmCslCetvhasse 87 
                 ++   Gv Lr+a+ +++++ ++ m ++C++ ++s++
  CDO69167.1 266 EGPSLGVDLRTAAPREEKEFTEYMKDVCTAPSTSDK 301
                 56678*******99999***********98776654 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00011
       FBP_C  64 eaakagarrrsmCslCetvhassevsLftarragaagrkgntvGtyiC 111
                 ++++a + + + C+  ++ ha ++ s+++ r a+++grk  t G+y  
  CDO69167.1 342 DSDSADEPEDQACTPPRDFHALDDLSFLVPRTASPNGRKLYTSGAYQY 389
                 456778889999********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3080.60
//
Query:       CDO69168.1  [L=556]
Description: hypothetical protein BN946_scf185042.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-67  227.4   0.1    3.7e-67  227.0   0.1    1.1  1  Asp             Eukaryotic aspartyl protease
    1.5e-14   54.6   2.7    1.2e-12   48.5   2.7    2.6  1  TAXi_N          Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
      0.071   13.8   4.6       0.13   12.9   0.7    3.3  3  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.0   0.1   6.1e-71   3.7e-67       1     314 [.      85     420 ..      85     421 .. 0.92

  Alignments for each domain:
  == domain 1  score: 227.0 bits;  conditional E-value: 6.1e-71
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E....E..EEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk....k..ngkslsisYGdgsvsGflsqdtvkvggltvknqefgea 93 
                 +Y+g++siGtp+q f+v++DTGSsdlWV  ++c     c +  t+dp++Sst +    +  + ++++i+YG+gsv+G+l+qdtv+++g tv+ q++ ++
  CDO69168.1  85 SYIGTVSIGTPPQPFKVVLDTGSSDLWVAVNDCF---SCGQTPTFDPTQSSTLQavtsStgSTQEVTIRYGSGSVQGTLAQDTVSMAGFTVNPQTLLLV 180
                 6********************************7...6**************984322211235679******************************** PP

                 EEESSHHHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-S........TTSSEEEEEESSEEGGGEEEEEEEEEESS....TSSTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
         Asp  94 tkepgstflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnr........eeeeggeivfGgvDeskykGsltyvpvts....kgywq 180
                 +++++  +l+ +++Gi+Gl+f+++++ +a+p+++ l s g  ++p  s++l r        +e+ gg +++Gg++++ ++G++  vp+t+     ++w 
  CDO69168.1 181 DRMTS-GLLDGDVSGIMGLAFQALASTNAVPFWQALASDGQFASPEISFWLARhlddenppDEQPGGVMTLGGTNSTLFTGDVEFVPLTTiggsPTFWM 278
                 **999.699******************************************999988888888999************************9999999** PP

                 EEEEEEEETTEEEEEEEEEEEE..EETTCSSEEEEHHHHHHHHHHHTTE.EEET.TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSE CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 181 ielesvtvggktvlcssgcqai..lDtGTsllalptsivekiakaigak.kses.egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesq 275
                 +el++ tv+g+tv+  +g++a+  +DtGT+l+ +p+++v++i  ai ++  + s +g + + C++   + ++++ +gg++  ++  ++ l + +s  ++
  CDO69168.1 279 LELTGATVQGQTVSVPTGSAALsaIDTGTTLVGGPSDAVAAIYGAIPGAiPVPSmAGFFQFPCST---NVQVALAFGGKSWPISSADMNLGRISS--NM 372
                 *************99******999********************996552444414788899995...9999*********************86..58 PP

                 EEESE.........EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 276 Cilgl.........vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 C+ g+         +   ++++w++Gd+Fl+++y+vf  +   vg+A+
  CDO69168.1 373 CVGGIfdltlgsdvSGGGGNPTWVVGDTFLKNVYTVFRANPAAVGFAQ 420
                 **********9997777889***************************8 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   2.7     2e-16   1.2e-12       1     144 [.      86     204 ..      86     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2e-16
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y+ ++siGtppqp+k+v+DtGs+ +Wv  + c +    ++p+fdp++sst +av++s+   +                 e++i+yg  g s++G+la+d
  CDO69168.1  86 YIGTVSIGTPPQPFKVVLDTGSSDLWVAVNDCFS--CGQTPTFDPTQSSTLQAVTSSTGSTQ-----------------EVTIRYG-SG-SVQGTLAQD 163
                 999************************9955553..34678999999999999998866555.................899***7.55.********* PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgksnlgglaa.gadGilGLGrgklS 144
                 t+++      + +v+  ++  ++++++gl + +++Gi+GL++++l+
  CDO69168.1 164 TVSM-----AGFTVNPQTLLLVDRMTSGLLDgDVSGIMGLAFQALA 204
                 ****.....677888555555554555555516********98864 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.7   2.3e-05      0.13       8      88 ..      97     198 ..      88     200 .. 0.71
   2 ?   -0.2   0.0      0.27   1.6e+03      27      60 ..     230     264 ..     226     299 .. 0.60
   3 ?   -2.5   0.0       1.4   8.2e+03      20      50 ..     453     481 ..     449     492 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvreselt....vrvsgaggevkarlvrlds...........lklggltlknvpalvld......lgee 81 
                     +p++++lDTG+s + +      ++g +++ ++++    + v+++ g+++  ++r  s           ++++g+t++ +++l +d      l+  
      CDO69168.1  97 QPFKVVLDTGSSDLWVAVNDCFSCGQTPTFDPTQsstlQAVTSSTGSTQEVTIRYGSgsvqgtlaqdtVSMAGFTVNPQTLLLVDrmtsglLDGD 191
                     799**************999999988887775432222444444555544555555577888888888999999999999999997665554455 PP

  Asp_protease_2  82 idglLGm 88 
                     + g++G+
      CDO69168.1 192 VSGIMGL 198
                     6677776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
  Asp_protease_2  27 laeklglkvreseltvrvsgagge.vkarlvrlds 60 
                     la+ l  ++ ++e +  v+++gg+ ++  ++ ++ 
      CDO69168.1 230 LARHLDDENPPDEQPGGVMTLGGTnSTLFTGDVEF 264
                     56666666677777888999999834445555554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.4
  Asp_protease_2  20 ttlispelaeklglkvreseltvrvsgagge 50 
                     +++is ++  +l ++ + +  + r+s++ g 
      CDO69168.1 453 SSVISATVSSTLSVPSSVN--PSRFSTIIGP 481
                     6899999999998888776..5777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3733.51
//
Query:       CDO69169.1  [L=363]
Description: hypothetical protein BN946_scf185042.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-32  112.5   0.0    2.2e-32  111.5   0.0    1.5  1  EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha
    2.9e-13   50.0   1.0    5.6e-13   49.0   1.0    1.5  1  S1           S1 RNA binding domain
     0.0085   15.5   1.0     0.0085   15.5   1.0    1.9  2  BUD22        BUD22


Domain annotation for each model (and alignments):
>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.0   3.7e-36   2.2e-32       1     116 []     171     297 ..     171     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 3.7e-36
                  HHHCTHHHHTTTTS-HHHHHHHHHSTTH.......HHHHTT.............S-TTTHHHHHHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHH CS
  EIF_2_alpha   1 lyeevgwklyekyghaydaFklaitdee.......vldkle.............ipeeveeaLveiikkklkpqkvkiradieltcftkdGveaIkea 78 
                  lye+++w+l +kygh ydaFkla+t          v    +             +p+ v + L+++i ++l+pq++k+radieltc+t+ G++aIk+a
   CDO69169.1 171 LYEQIVWPLGRKYGHPYDAFKLALTTCVtddpstlV----RsepdtvfsslpnpVPQPVLNILLSTIARRLTPQPIKLRADIELTCYTPAGIDAIKKA 264
                  7*******************9998876523333331....0334444445556699****************************************** PP

                  HHHHST.S..TTSSSEEEEEEEESSSSEEEEEEEES.. CS
  EIF_2_alpha  79 LkageeasneeeveeeeevkikliapPeYvltvetldk 116
                  L+age++s+e+     +++k kl+apP+Yvl+++++dk
   CDO69169.1 265 LRAGEAQSSEA-----VPIKAKLVAPPLYVLSTNATDK 297
                  **999966666.....*******************997 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   1.0   9.3e-17   5.6e-13       2      75 .]       9      83 ..       8      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 9.3e-17
                STTTCEEEEEEEEEETTEEEEEET..TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1  2 pekgevveGeVtsvtkgGafVelg..ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75
                pe++e v+  V ++ ++Ga+V l+   ++eg++ +selsr+ r++++ + ++vG    v+vl+vdk++++i+ls++
  CDO69169.1  9 PEVDELVMVQVRQIAEMGAYVKLLeyDNIEGMILLSELSRR-RIRSIQKLIRVGRNEVVVVLRVDKEKGYIDLSKR 83
                899*********************999**************.********************************86 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.0   1.4e-06    0.0085      49     175 ..      29     158 ..      15     174 .. 0.55
   2 ?   -0.3   0.7     0.086   5.1e+02     208     228 ..     331     357 ..     269     362 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
       BUD22  49 lKslDleqiAekilaskllktkklaeseelpealks..............ikdkkpksnpeekneelektkalenvtsrLlnsktvkevveeivesvkk 133
                 +K l++++i   il s+l +  ++++ ++l++  ++              i  +          +   + +++ + + r ++sk+v++ + ++ +++ +
  CDO69169.1  29 VKLLEYDNIEGMILLSELSRR-RIRSIQKLIRVGRNevvvvlrvdkekgyIDLS----------KRRVSPEDIVKCEERYMKSKAVASIMRHVASKIPS 116
                 566777777777777777665.56665655555555555554322222222222..........33445668899**********************99 PP

       BUD22 134 llgiek..kkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeees 175
                 + g     +++k++e++++++k+++++ +ke +e  ++ ++e++
  CDO69169.1 117 VNGEVLegEQAKQAEAEAAEAKRSRRAARKEGHE--DEVADENA 158
                 9885554422222222222222222222222222..11222222 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.086
       BUD22 208 deeaeerelaqydglla......sdde 228
                  +e+ee++la++ + ++      s de
  CDO69169.1 331 VSETEEQDLAALMAKASqenaevSGDE 357
                 122222222222221111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 1959.01
//
Query:       CDO69170.1  [L=386]
Description: hypothetical protein BN946_scf185042.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-61  204.6   2.8    4.5e-20   71.4   0.1    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.1   2.5e-24   4.5e-20       4      96 ..      90     178 ..      88     179 .. 0.94
   2 !   63.3   0.1   8.1e-22   1.5e-17       6      90 ..     195     277 ..     191     283 .. 0.93
   3 !   69.0   0.0   1.4e-23   2.5e-19       2      96 ..     290     385 ..     289     386 .] 0.91

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2.5e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 s++k+l aG ++g++++lv +P+d+vK+r+qt++  + +    ++l++ + i+k+eG +++y+G l  ll++ +  +++f++ e+ kr++ ++
  CDO69170.1  90 STIKDLTAGTAGGIAQVLVGQPFDIVKVRMQTAPPGTYS----GMLHCAGGILKNEGPLAFYKGTLTPLLGIGVCVSIQFAALEYSKRYFARQ 178
                 57899*****************************99765....3*********************************************9875 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 8.1e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                  + +++G++ag+++++v  P++ +++rlqtq+ ++    +a+ +d++kki+ ++G++g y+G +++l r a   +++f++ye+l 
  CDO69170.1 195 GQLFVSGMFAGLANGVVSGPVEHIRIRLQTQSATNPV--YAGPFDAMKKIWAHNGIAGIYKGQVVTLWREALGYGIYFWAYEKLM 277
                 5779******************************987..567****************************************986 PP

  == domain 3  score: 69.0 bits;  conditional E-value: 1.4e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 ++++++ +l G++ag + + v++P+d++K r+qt++ s+++ ++++ +ld++++++++eGl ++ rGl+p+l+r+  a++++f+ +e   rll ++
  CDO69170.1 290 QVNPANAVLFGAAAGYALWAVIYPIDMIKSRMQTDGFSAATGQKYKsTLDCVRTVWRTEGLPAFTRGLGPTLIRSPFANGATFLGFELASRLLHNN 385
                 5788999***************************9988755544445********************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2522.48
//
Query:       CDO69171.1  [L=415]
Description: hypothetical protein BN946_scf185042.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-16   59.2   0.1      8e-16   58.3   0.1    1.4  1  NUDIX       NUDIX domain
    4.2e-12   46.6   0.1    8.5e-12   45.6   0.1    1.5  1  NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domai


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   8.9e-20     8e-16      17     118 ..     226     319 ..     219     332 .. 0.75

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.9e-20
                 EEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE..EEECSGCSSTSTTTEEEEEEEE CS
       NUDIX  17 vLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl..eevegelepndenevsevrwvp 111
                 v lv+ +   +pg  ++  +G++epgE++e+A+ REl+EE+G+++ ++++++        ++p++ +  +++ f   ++    l+++ +ne++e+rw++
  CDO69171.1 226 VCLVQKK---WPGkfYSCMAGFIEPGESFEDAVKRELWEEAGVKVWDVRYHS--------TQPWPYPANLMVGFYarASSSQALRTDLDNELEEARWYS 313
                 6666644...777656799************************777777777........556666556665555337777777777************ PP

                 HHHHHHH CS
       NUDIX 112 leellke 118
                  +e+ ++
  CDO69171.1 314 RDEI-LQ 319
                 ****.32 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1   9.5e-16   8.5e-12       1     102 []      35     201 ..      35     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 9.5e-16
  NUDIX-like   1 sarfllfrrgrllves...........................eeseeelllpadssaal.................vgkdseelvfLGldeg...... 49 
                 s+r+++f++g++lv+s                           +               +                  +   + +vfLGl e+      
  CDO69171.1  35 STRWVVFKEGQPLVHSrpnaqkqslarlttndvrpllgsepifS---------------QgqhegelaptdvsgldaARLRGPPVVFLGLHETdagssn 118
                 69**************9999999999995555555555555540...............455555555555555566799*********9999999*** PP

  NUDIX-like  50 .....................gapvfAvdvsareee.........ikeaeeeggafvelRavmlalsaedaalaaqAralldW 102
                                      g+p+f +dvs+ +e            + e+   af e Ra+m  ++a +aal+a Ar+++dW
  CDO69171.1 119 alpssdfsakssaetvianisGTPYFSLDVSDVAEAqldevlknaAVTKEGADLAFSEPRAAMGNFDAFEAALFAEARSMVDW 201
                 ******************************************99888889999****************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2750.08
//
Query:       CDO69172.1  [L=327]
Description: hypothetical protein BN946_scf185042.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2218.03
//
Query:       CDO69173.1  [L=416]
Description: hypothetical protein BN946_scf185042.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-18   67.2   0.1    2.5e-18   66.4   0.1    1.4  1  NUDIX           NUDIX domain
      6e-08   33.3   0.1    1.4e-07   32.1   0.1    1.7  1  NUDIX-like      NADH pyrophosphatase-like rudimentary NUDIX d
    0.00017   21.2   0.1    0.00063   19.3   0.2    1.9  2  zf-NADH-PPase   NADH pyrophosphatase zinc ribbon domain
  ------ inclusion threshold ------
       0.06   13.1   0.4       0.11   12.3   0.4    1.4  1  zinc_ribbon_2   zinc-ribbon domain
       0.13   12.2   0.1        0.3   11.0   0.1    1.6  1  Nudix_N_2       Nudix N-terminal
       0.23   11.5   0.5       0.55   10.3   0.5    1.7  1  DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domai
       0.26   10.9   0.2       0.44   10.2   0.2    1.3  1  Crr6            Chlororespiratory reduction 6


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.1   9.9e-22   2.5e-18       2     116 ..     250     362 ..     249     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 9.9e-22
                 EEEEEEEE.EEETTSE.EEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEEEEEECSG CS
       NUDIX   2 lrravgvv.llnekge.vLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheil.yvfleevege 95 
                 ++ av v+ ++ne g  +Ll r   kp+p   W+   G++epgE++e+A+ REl+EE+G+++ ++++++      + + p+++ + ++ ++ +++  + 
  CDO69173.1 250 RTDAVVVMaVTNESGDkILLGRN--KPWPKnfWSCLSGFLEPGESFEDAVKRELWEEAGVRVWNVRYHS------TLPWPFPS-TLLTgFYATASSAEP 339
                 567899999*****997777774..588888*****************************887788887......44445553.333325555888888 PP

                 CSSTSTTTEEEEEEEEHHHH..H CS
       NUDIX  96 lepndenevsevrwvpleel..l 116
                 l+++ +ne++++rw++ ee+  +
  CDO69173.1 340 LRTDLDNELEDARWYTREEIlmV 362
                 9999***************9532 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   5.5e-11   1.4e-07       1     102 []      29     197 ..      29     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 5.5e-11
  NUDIX-like   1 sarfllfrrgrllves.............................eeseeelllpadssaalvgkdseelvfLGldeg..................... 49 
                 s+r+++f++g++l++s                             +++e++l+  + ++ ++ +   +  +fLGl e                      
  CDO69173.1  29 STRWIVFKEGQPLLRShanaaqkslarlttkdvrpllgpepffsqGQNEGDLAPADVPRLQAARLCGPPIIFLGLHEPaggsgssdalpssdfsakaga 127
                 69**************99999999999988888888888888777444555555544444447778888888887777788888888888888888888 PP

  NUDIX-like  50 ........gapvfAvdvsareee.........ikeaeeeggafvelRavmlalsaedaalaaqAralldW 102
                         g+p+f +dvs+ +++           + e+ + af + + +m +++a ++al+a Ar++ dW
  CDO69173.1 128 etviahikGTPYFSLDVSDVASSdvdrvlldaAVTKEAGELAFTDPKVAMGSFDAFESALFAEARSMTDW 197
                 888888888*********************9988889999****************************** PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2     3e+03       5      17 ..     121     133 ..     118     133 .. 0.83
   2 !   19.3   0.2   2.5e-07   0.00063       1      26 [.     199     224 ..     199     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  zf-NADH-PPase   5 FCgrCGaptepae 17 
                    F ++ Ga+t+ a+
     CDO69173.1 121 FSAKAGAETVIAH 133
                    89999****9886 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.5e-07
  zf-NADH-PPase   1 rthrFCgrCGaptepaeggwarvCpa 26 
                    ++++FC+ CG+p+    +gw++ C++
     CDO69173.1 199 ARNKFCPSCGSPVYSLWAGWKLSCSS 224
                    5899********************75 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   4.1e-05      0.11      12      22 ..     200     210 ..     198     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.1e-05
  zinc_ribbon_2  12 nakFCpyCGtp 22 
                    ++kFCp CG+p
     CDO69173.1 200 RNKFCPSCGSP 210
                    68*******98 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00012       0.3       1      10 [.     202     211 ..     202     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                 -B-TTT--B- CS
   Nudix_N_2   1 kFCsqCGtpv 10 
                 kFC++CG+pv
  CDO69173.1 202 KFCPSCGSPV 211
                 9********8 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00021      0.55       2       9 ..     204     211 ..     203     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
  DNA_ligase_ZBD   2 CPvCGsav 9  
                     CP+CGs+v
      CDO69173.1 204 CPSCGSPV 211
                     *******9 PP

>> Crr6  Chlororespiratory reduction 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00017      0.44      46      69 ..     297     320 ..     292     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
        Crr6  46 dprElsEipevRlwfirldavyPw 69 
                  +rEl E + vR+w +r  ++ Pw
  CDO69173.1 297 VKRELWEEAGVRVWNVRYHSTLPW 320
                 579********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 2089.23
//
Query:       CDO69174.1  [L=312]
Description: hypothetical protein BN946_scf185042.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.21   10.2   1.9        5.5    5.5   0.6    2.0  2  AA_permease  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.6    0.0003       5.5     239     286 ..       4      53 ..       1      60 [. 0.77
   2 ?    4.0   0.0   0.00087        16     369     396 ..     112     139 ..     109     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0003
  AA_permease 239 vviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvs 286
                  ++++++++Y l +l+++l    +d ++l++ asa   s +  f k + ++
   CDO69174.1   4 MIFTTVFVYCLCALVAVLQSTSPDSTFLASLASAlnISTLSAFSKALHLA 53 
                  6899*************************999997744444444444444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.00087
  AA_permease 369 laisaliglivwlliilsylrfRkalky 396
                  l++++li+l+ ++l ++s++++R ++ +
   CDO69174.1 112 LTATGLIILFGLILLCTSHTPYRATKPK 139
                  6789*******************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2170.07
//
Query:       CDO69175.1  [L=467]
Description: hypothetical protein BN946_scf185042.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-14   52.9   0.0    4.7e-14   52.4   0.0    1.2  1  CRAL_TRIO  CRAL/TRIO domain
  ------ inclusion threshold ------
       0.28   10.6   0.7        0.4   10.1   0.7    1.2  1  MSC        Man1-Src1p-C-terminal domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   5.2e-18   4.7e-14      14     158 ..     180     327 ..     173     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 5.2e-18
   CRAL_TRIO  14 rDkegrpvlylrlgrfdpkklsleelvralvlvlerllkelee..........dgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlgk 102
                 rD  grp+++++l++   ++ ++ e + +++  l+  l++l+e            ++ +++ ++D+ ++s+++++   ++l+  ++  l   +p +l  
  CDO69175.1 180 RDPFGRPIIVVKLSQLFNASGDVREALVYHLEQLRINLRTLNErsnpgpsdgeRVPILQYVALFDIGDVSVQNID---MDLITWFIFELIPRFPGMLAA 275
                 7999**********66666555446666666666666666666788888898899********************...8888888888889******** PP

   CRAL_TRIO 103 ilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGG 158
                 ++++n ++  + ++++vk +l+++  ++i+f s     ++l +yi+++ lp+ +GG
  CDO69175.1 276 VFVLNYSWAHSGVWSIVKRVLPKSALSRIFFPSR----EELLQYIPRSALPQDYGG 327
                 ********************************77....45***************9 PP

>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   4.5e-05       0.4     212     255 ..     414     458 ..     392     461 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.5e-05
         MSC 212 rsvretlaryrllllgllll.lllilylrsrlrsrraekerveel 255
                   ++ ++ r+++++++ll++ l+l++++++r ++  + k+rv++l
  CDO69175.1 414 TLASLWWSRWKHHVYVLLCIaLVLVMVASRRRTRILRWKQRVRSL 458
                 344567***********9994555566777777778889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3278.81
//
Query:       CDO69176.1  [L=321]
Description: hypothetical protein BN946_scf185042.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-25   89.0   0.3    1.8e-24   87.4   0.3    1.7  1  Metallophos  Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.084   13.3   0.4       0.17   12.4   0.4    1.5  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.3     2e-28   1.8e-24       3     201 ..      48     246 ..      46     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 2e-28
                  EEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH.TSEEEEEC-TTS........CHHHHHHHHHHHHHHH CS
  Metallophos   3 ilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvky.pipvylllGNHe........gfeeellnkygylgif 91 
                  ++v+gD+H     g   ++            ++l+l  GD+vdrg ++ e++ ll+ l  + p++v l++GNHe        gf+ e+ +kyg     
   CDO69176.1  48 VTVVGDIH-----GIGGYAPH---------TNYLFL--GDYVDRGLFSVETISLLTCLKLRwPDRVQLIRGNHEsravtqtyGFYTECVRKYGG---- 125
                  66667777.....33333333.........5699**..*******99999999966666666*****************************998.... PP

                  HHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC....................HHHHHHHHHHTTCSEEEEEES CS
  Metallophos  92 sepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg....................dewlkdlekrekadwvivlgH 168
                  s++w ++++ f++l l++ +++  +++++hGg sp + +s+d+++ +++++ a+                       d+ ++d   ++          
   CDO69176.1 126 SHVWTYFTDMFDFLTLSVVIDD--RIFCVHGGlSPSI-HSIDQIKVVDRFRGASCYYardhaqlthcaeiphegpmaDLVWSD---PD---------- 207
                  99********************..********86666.666666666666665555555543333333333333777777777...33.......... PP

                  SESS.........CSSSCSCCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 169 sply.........rgsgylfgdealedllkkygvdlvisGHt 201
                     +         rg+gy+fg+ ++ ++l+ ++  +++++H+
   CDO69176.1 208 ---PekedfaispRGAGYTFGSGVVYKFLETNKMSHILRAHQ 246
                  ...34455555556999************************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   1.9e-05      0.17       1      42 [.       6      39 ..       6      44 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQP 42
                +D +I +Ll        k++ L+ea +r +Cak +e+++++ 
  CDO69176.1  6 LDACIAQLLR-------KQL-LHEALLREICAKTKEVLMRES 39
                5777777776.......344.******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2436.77
//
Query:       CDO69177.1  [L=337]
Description: hypothetical protein BN946_scf185042.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   16.3  17.8      0.015   15.7   6.1    3.9  4  zf-C2H2    Zinc finger, C2H2 type
       0.22   12.0   0.3       0.22   12.0   0.3    3.3  4  zf-H2C2_2  Zinc-finger double domain
       0.48    9.9   6.1       0.74    9.3   6.1    1.2  1  Lin-8      Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.1   6.2         3   1.8e+04      18      23 .]      56      61 ..      53      62 .. 0.65
   2 ?   -6.7   6.2         3   1.8e+04       9      23 .]     101     115 ..     101     115 .. 0.81
   3 ?   13.9   3.8   9.2e-06     0.055       1      23 []     278     301 ..     278     305 .. 0.96
   4 ?   15.7   6.1   2.5e-06     0.015       1      20 [.     306     325 ..     306     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: -9.1 bits;  conditional E-value: 3
                HHHHCC CS
     zf-C2H2 18 rHirtH 23
                +H+r H
  CDO69177.1 56 QHLRGH 61
                466666 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 3
                 EESSHHHHHHHHHCC CS
     zf-C2H2   9 sFkrksnLkrHirtH 23 
                 s++++++  +H+  H
  CDO69177.1 101 SYPSPHHQHQHQHQH 115
                 688899999999877 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 9.2e-06
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 ++C++C+ksF r ++ krH+ + H
  CDO69177.1 278 FYCDKCDKSFGRAHDKKRHYESaH 301
                 89*****************99888 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 2.5e-06
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 ++C  C+k+F+r+++LkrH+
  CDO69177.1 306 HECRFCHKCFSRNDSLKRHQ 325
                 78*****************8 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.4   1.4e+04       5      10 ..      57      62 ..      56      64 .. 0.77
   2 ?   12.0   0.3   3.7e-05      0.22      10      25 ..     273     288 ..     270     289 .. 0.84
   3 ?    1.9   9.3     0.058   3.5e+02       9      25 ..     301     316 ..     291     317 .. 0.72
   4 ?   -3.4   0.1       2.9   1.7e+04       1       5 [.     320     324 ..     320     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.4
   zf-H2C2_2  5 HirkHt 10
                H+r H 
  CDO69177.1 57 HLRGHQ 62
                999985 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.7e-05
   zf-H2C2_2  10 tgekpyeCplCdkaFk 25 
                 t++ ++ C++Cdk+F 
  CDO69177.1 273 TPQERFYCDKCDKSFG 288
                 67778**********7 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.058
   zf-H2C2_2   9 HtgekpyeCplCdkaFk 25 
                 H  ++ +eC +C+k F+
  CDO69177.1 301 HL-QTHHECRFCHKCFS 316
                 44.3568*********7 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.9
   zf-H2C2_2   1 nLrrH 5  
                 +L+rH
  CDO69177.1 320 SLKRH 324
                 59999 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.1   0.00012      0.74     159     254 ..      47     143 ..      17     162 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00012
       Lin-8 159 eeeekveveeeaeeqgsmdlketeaeevkeeqmeqsfeeeeeakleeptvniveeeaaaravdqsfgsaeqqlessssrtssassssss.aapssta 254
                 +++ + +  ++  ++++++ + ++ +  + +++ +++ + ++++ + p+ + ++++ + +++ q++++++q++++  s ++ ++ +  s + p+ ++
  CDO69177.1  47 DHSSAQHHHQHLRGHQQIQTQAYTRSPDEASPTGHAYAYPPHPQVSPPVPGNYSSYPSPHHQHQHQHQHQQHQPQQGSTSYRSTPQGMSaTLPPINQ 143
                 3333334456666777777777777777777788888899*********************************776666655554444403333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2662.54
//
Query:       CDO69178.1  [L=334]
Description: hypothetical protein BN946_scf185042.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-09   37.1   2.7    4.9e-09   35.9   2.7    1.7  1  zf-CCCH         Zinc finger C-x8-C-x5-C-x3-H type (and simila
    1.4e-07   31.3   5.7    2.4e-07   30.5   5.7    1.4  1  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
    1.2e-06   28.4   7.8    2.1e-06   27.6   7.8    1.4  1  zf-RING_5       zinc-RING finger domain
      3e-06   27.0   8.6    5.8e-06   26.1   8.6    1.5  1  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
    7.2e-06   25.7   7.5    1.3e-05   24.9   7.5    1.5  1  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
    7.6e-06   25.9   6.1    1.5e-05   24.9   6.1    1.5  1  zf-RING_UBOX    RING-type zinc-finger
    1.6e-05   24.8   4.4    3.1e-05   23.9   4.4    1.5  1  zf_CCCH_4       Zinc finger domain
    0.00011   22.3   2.6    0.00011   22.3   2.6    1.6  1  zf-RING_10      zinc RING finger of MSL2
    0.00018   21.8   7.1    0.00035   20.9   7.1    1.5  1  zf-RING_2       Ring finger domain
     0.0016   18.2   2.9     0.0031   17.3   2.9    1.5  1  zf-CCCH_4       CCCH-type zinc finger
     0.0067   15.8   0.4     0.0067   15.8   0.4    2.0  2  Rtf2            Rtf2 RING-finger
     0.0084   16.2   7.6       0.02   15.0   7.6    1.6  1  zf-C3HC4_4      zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
      0.054   13.4   6.7      0.098   12.5   6.7    1.4  1  Prok-RING_4     Prokaryotic RING finger family 4
       0.37   11.1   2.7       0.27   11.6   0.5    1.9  2  Ribosomal_L34e  Ribosomal protein L34e
       0.44   10.9   6.1        1.1    9.7   4.3    2.3  2  C1_2            C1 domain


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   2.7   4.1e-12   4.9e-09       1      26 [.     174     199 ..     174     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4.1e-12
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 y+   C+++++tGyC +Gd+CkF H+
  CDO69178.1 174 YQPDVCKDYKETGYCGFGDTCKFLHD 199
                 66789********************7 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   5.7     2e-10   2.4e-07       4      47 ..     235     277 ..     233     280 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2e-10
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpi 47 
                  C+iC +   + v+ +CgH  +C++Ca k  +++++C  C +p 
  CDO69178.1 235 ACIICRKPYIDPVVTRCGHY-FCSACAIKRFSKTPRCAACGAPT 277
                 5*******************.*******************9885 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   7.8   1.7e-09   2.1e-06       2      43 ..     236     274 ..     235     275 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.7e-09
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C +C++++    ++++t+CgH+fC++C+ k++ k  +C +C+
  CDO69178.1 236 CIICRKPY---IDPVVTRCGHYFCSACAIKRFSKTPRCAACG 274
                 99******...9********************9********7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   8.6   4.8e-09   5.8e-06       1      41 []     236     273 ..     236     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.8e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC + + +p+ ++ C+H fCs+C  k  +  k+  C  C
  CDO69178.1 236 CIICRKPYIDPV-VTRCGHYFCSACAIKRFS--KTPRCAAC 273
                 ************.*****************9..8888**99 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   7.5   1.1e-08   1.3e-05       2      40 .]     236     273 ..     235     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.1e-08
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 C iC   + dp vvt CgH fC+ C  +  ++  +C  C
  CDO69178.1 236 CIICRKPYIDP-VVTRCGHYFCSACAIKRFSKTPRCAAC 273
                 ***********.************************988 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   6.1   1.3e-08   1.5e-05       1      31 [.     236     263 ..     236     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.3e-08
  zf-RING_UBOX   1 CpIClelftdPlvlpCGHtFCreClwelsks 31 
                   C IC+ ++ dP+v+ CGH FC+ C     k+
    CDO69178.1 236 CIICRKPYIDPVVTRCGHYFCSACA---IKR 263
                   99*********5568*********9...223 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   4.4   2.6e-08   3.1e-05       1      19 []     179     198 ..     179     198 .. 1.00

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.6e-08
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 Ck +++ G+C +Gd C+F+H
  CDO69178.1 179 CKDYKEtGYCGFGDTCKFLH 198
                 ******************** PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   2.6   9.1e-08   0.00011       2      44 ..     235     274 ..     234     288 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.1e-08
  zf-RING_10   2 sCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsqCk 44 
                 +C++C k   dP+    ++C+Hy C  C  k+ + +p+C+ C 
  CDO69178.1 235 ACIICRKPYIDPVV---TRCGHYFCSACAIKRFSKTPRCAACG 274
                 79999998888876...59***********************7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   7.1   2.9e-07   0.00035       2      43 ..     235     273 ..     234     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.9e-07
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlC 43 
                  C IC +++   d v++  CgH f+  C+ + + ++++C +C
  CDO69178.1 235 ACIICRKPYI--DPVVTR-CGHYFCSACAIKRFSKTPRCAAC 273
                 5*****9997..455555.*********9888999999***9 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.9   2.6e-06    0.0031       2      22 .]     178     199 ..     177     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFsHd 22 
                 +C+ +  +G C fGd C+F+Hd
  CDO69178.1 178 VCKDYKeTGYCGFGDTCKFLHD 199
                 7********************9 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.7         2   2.4e+03     188     188 ..     109     109 ..      36     165 .. 0.57
   2 !   15.8   0.4   5.6e-06    0.0067      92     180 ..     211     302 ..     207     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
        Rtf2 188 k 188
                 +
  CDO69178.1 109 E 109
                 1 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 5.6e-06
        Rtf2  92 kltknpafeeskkdatkdtkeapfiCpltglemngktkfvalrkCGcVf.sekalkev.ksevClvCgke....ykeedviplnptke.elellka 180
                 kl  np++++++++ t+ ++  pf+C + ++   +     ++  CG+ f s+ a+k + k+  C  Cg++    ++ +d ++  ++k  e+e+ +a
  CDO69178.1 211 KLAANPKKQAEEESDTDSDEDIPFACIICRKPYID----PVVTRCGHYFcSACAIKRFsKTPRCAACGAPtagiFNRADKVIAKMRKKqEAEEAEA 302
                 789999999999999**************998755....47899***985788****955888****99766668999999998888745555554 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   7.6   1.7e-05      0.02       1      33 [.     236     269 ..     236     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsC.isslqkepd 33 
                 C iC++   +Pv   CGh fC  C i++++k p 
  CDO69178.1 236 CIICRKPYIDPVVTRCGHYFCSACaIKRFSKTPR 269
                 99****99****************8888888873 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   6.7   8.2e-05     0.098       1      36 [.     236     273 ..     236     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.2e-05
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdskdls..sCPlC 36 
                  C++C++   ++++  CgH +C +C  +  ++  +C  C
   CDO69178.1 236 CIICRKPYIDPVVTRCGHYFCSACAIKRFSKtpRCAAC 273
                  ************************86653333355555 PP

>> Ribosomal_L34e  Ribosomal protein L34e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       6.6   7.9e+03      30      45 ..     139     154 ..     135     167 .. 0.70
   2 ?   11.6   0.5   0.00023      0.27      34      69 ..     260     295 ..     250     299 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.6
  Ribosomal_L34e  30 lvyqykkkkgkapkCg 45 
                       + ++kk++++pk+ 
      CDO69178.1 139 GYTSHIKKNKEVPKAM 154
                     4556777777777754 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00023
  Ribosomal_L34e  34 ykkkkgkapkCgdckkkLqGipalrpkelsrlsktk 69 
                      +k+ +k p+C+ c++  +Gi +   k +++++k++
      CDO69178.1 260 AIKRFSKTPRCAACGAPTAGIFNRADKVIAKMRKKQ 295
                     578999**************************9987 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.3   0.00088       1.1      12      47 .]     227     271 ..     211     271 .. 0.76
   2 ?    1.3   0.1      0.37   4.4e+02      19      30 ..     268     279 ..     261     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00088
        C1_2  12 gedssesfnCsaCgrk.idgff.....YsCseC...dfslhvrCa 47 
                 ++d+++ f C +C+++ id+       Y Cs C   +fs   rCa
  CDO69178.1 227 DSDEDIPFACIICRKPyIDPVVtrcghYFCSACaikRFSKTPRCA 271
                 5678889*********95444455568******443476666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.37
        C1_2  19 fnCsaCgrkidg 30 
                  +C aCg ++ g
  CDO69178.1 268 PRCAACGAPTAG 279
                 68*****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2232.38
//
Query:       CDO69179.1  [L=359]
Description: hypothetical protein BN946_scf185042.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-09   37.2  14.4    4.7e-09   36.2  14.4    1.5  1  bZIP_2       Basic region leucine zipper
    3.2e-05   23.9   8.4    6.6e-05   22.9   8.4    1.4  1  bZIP_1       bZIP transcription factor
     0.0051   16.7   0.1     0.0096   15.8   0.1    1.4  1  Shugoshin_N  Shugoshin N-terminal coiled-coil region
  ------ inclusion threshold ------
      0.024   14.1   2.8      0.043   13.2   2.8    1.3  1  DUF3552      Domain of unknown function (DUF3552)
       0.11   13.0   4.4       0.39   11.3   4.2    2.0  2  bZIP_Maf     bZIP Maf transcription factor
       0.13   12.4   0.0       0.27   11.5   0.0    1.4  1  XhlA         Haemolysin XhlA
        0.6    8.7   6.6       0.79    8.3   6.6    1.3  1  Hamartin     Hamartin protein
        2.3    7.0   5.2        3.8    6.2   5.2    1.3  1  Nucleo_P87   Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2  14.4   2.1e-12   4.7e-09       4      54 .]     253     303 ..     251     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.1e-12
                 XXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   4 eyrerRrkNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLeke 54 
                 +++++Rr+N++A++r+R kkk++e+ le+++keLe +  +L++++e+L++e
  CDO69179.1 253 AAEDKRRRNTAASARFRLKKKEREAALERKAKELEVRVGELEKECEALRRE 303
                 679*********************************************998 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   8.4     3e-08   6.6e-05       9      60 ..     257     308 ..     254     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3e-08
                 XX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   9 rkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLk 60 
                 ++ +N  a +r+R++K+++ ++Ler++k+Le    +L +e e l+ e+  Lk
  CDO69179.1 257 KRRRNTAASARFRLKKKEREAALERKAKELEVRVGELEKECEALRRENGWLK 308
                 7889*************************************99999887666 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.3e-06    0.0096      21      44 ..     288     311 ..     281     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.3e-06
  Shugoshin_N  21 lkirelekevseLlsENlnLReli 44 
                   +++eleke++ L++EN +L+ l+
   CDO69179.1 288 VRVGELEKECEALRRENGWLKGLV 311
                  69***************9999876 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.8   1.9e-05     0.043      72     144 ..     255     330 ..     251     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
     DUF3552  72 elkerrnelqrlekRllq..keetLdrkeeslekkeesleekekelkqkeqsleekeeeleel.veeqrqeLeris 144
                 e k+rrn  ++   Rl++  +e +L+rk ++le +  +le++ + l++++  l+     ++     +q+q+L++is
  CDO69179.1 255 EDKRRRNTAASARFRLKKkeREAALERKAKELEVRVGELEKECEALRRENGWLKGLVVGVTGAgAVQQQQQLQQIS 330
                 668899999999999976115689******************************9999988762568889999998 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.3   1.2e+04       2      22 ..      36      57 ..      35      58 .. 0.76
   2 ?   11.3   4.2   0.00017      0.39      35      81 ..     258     304 ..     255     310 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.3
    bZIP_Maf  2 sdeellsls.vrEfnrflrglt 22
                sd +lls++   ++n +l+ +t
  CDO69179.1 36 SDADLLSVPpFPDLNAQLDLWT 57
                7888888853789999998887 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00017
    bZIP_Maf  35 rlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqek 81 
                 r++N  + ++ r ++ +++  le++ +ele ++ +l++e ++lr+e+
  CDO69179.1 258 RRRNTAASARFRLKKKEREAALERKAKELEVRVGELEKECEALRREN 304
                 66799****************************************97 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.27      21      63 ..     277     317 ..     269     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
        XhlA  21 dkleekaaeaeekiknleedlkklesnqkWlirtiiGalisav 63 
                   le+ka e e ++ +le++ + l   + Wl+++++G  ++++
  CDO69179.1 277 AALERKAKELEVRVGELEKECEALRRENGWLKGLVVG--VTGA 317
                 579**********************************..6665 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.6   0.00035      0.79     319     432 ..     191     302 ..      89     357 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00035
    Hamartin 319 srskddeislWSPssvcgmttppsspgivpttelelsssasllsskvsstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeks 417
                 + + +++ s++SP+  +  + p  s +++   +      +s ls +  s+pe+  +++ ++TP+   ++ +++++   ++  l+++ r+++  rk ++ 
  CDO69179.1 191 PVQPTSTPSVSSPQQPSQAPSPAASTTTT---KRARTARTSVLSPSDLSPPESPEESKSSGTPLSAAEDKRRRNTAASARFRLKKKEREAALERKAKEL 286
                 11222222444444333333333222222...2333444555555566666666666666666666666655555555666666666666666666666 PP

    Hamartin 418 esskpdlskqeev.en 432
                 e    +l+k+ e+ + 
  CDO69179.1 287 EVRVGELEKECEAlRR 302
                 6666666665555444 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.2    0.0017       3.8     316     430 ..     172     285 ..     156     305 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0017
  Nucleo_P87 316 Peqtparrkstk..mteeslqsPaqtpawqtpattptretssdteaiksepektleeklreklpsdlsaqssvpdkkseasavlptekrkRrrarklqe 412
                 P++t a+  s++     +   +P+ tp  ++p++ p++ +s+   +++++  +t  +      psdls   s +++ks+ +   ++e+++Rr++     
  CDO69179.1 172 PANTIAHLLSMHasTFRQGPVQPTSTPSVSSPQQ-PSQAPSPAASTTTTKRARTART--SVLSPSDLSPPESPEESKSSGTPLSAAEDKRRRNTAASAR 267
                 4444443333220022334556667777555543.4444454444444443444333..5556899998888777777777767777777776666555 PP

  Nucleo_P87 413 lssdededssdekevDke 430
                 +  + +e +   + + ke
  CDO69179.1 268 FRLKKKEREAALERKAKE 285
                 554444422322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1076  (0.0600145); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2391.39
//
Query:       CDO69180.1  [L=498]
Description: hypothetical protein BN946_scf185042.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-42  145.5   0.0    3.6e-42  144.7   0.0    1.4  2  NTP_transferase  Nucleotidyl transferase
      3e-06   27.7   0.3    7.6e-06   26.4   0.3    1.7  1  NTP_transf_3     MobA-like NTP transferase domain
    0.00024   21.0   0.1    0.00045   20.1   0.1    1.5  1  MannoseP_isomer  Mannose-6-phosphate isomerase
     0.0019   18.1   0.0     0.0047   16.8   0.0    1.6  2  CK2S             Casein Kinase 2 substrate
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.18   11.5   0.0    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
       0.15   12.5   0.6        0.3   11.5   0.6    1.4  1  ZapB             Cell division protein ZapB


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   1.2e-45   3.6e-42       3     242 ..     138     420 ..     136     426 .. 0.90
   2 ?   -3.8   0.0       2.5   7.5e+03      45      67 ..     466     488 ..     457     493 .. 0.77

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 1.2e-45
                      EEE--S--GGGTTCCTTSSGGGSEETTET..ETTHHHHHHHHH.TT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHT CS
  NTP_transferase   3 vILaGGsGtRLwPLtrtlakklvpvlgke..rliqatlsrlan.sgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvala 93 
                      vI aGG+GtRLwPL+r+ ++k ++ l+ +  +liqat+ rl+  s+  ++ +v  + h  +++eql +        +   ep+ k++  A+ la
       CDO69180.1 138 VIPAGGAGTRLWPLSREEHPKFLLDLTLKgrSLIQATWDRLIPlSSAARTAIVAGPAHVKSIKEQLPDLL--P--HNLFCEPSAKDSMAAIGLA 227
                      788******************9987665556***********98999999******************94..4..89***************** PP

                      HHHHTTSSE..EEEEETTEEEEST..THHHHHHHHHTHSSTT.SEEEEEEESS-CTTSEEEEEC.........TTSBEEEEECS-SSHSHCSEE CS
  NTP_transferase  94 aelledeksdelvlvLggDhlikd..ayeeavkkaiekaakg.tvtfgivpveeateyGviead.........eegrverfvEKPkeakasela 175
                      a +l+ ++ d+++  +++Dh+i+   a+ +av++a+e a+k  +vt+gi p +++t++G+++ +         +++ v +f+EKP++ +a+ ++
       CDO69180.1 228 AAVLALRDPDAIIGSFAADHMISGddAFLAAVAEAVEVAKKEyLVTIGIAPSHPSTGFGYVRLGeklgfqdapNARLVSSFKEKPDARTAAAYI 321
                      **********************8778************99988*********************8888877766669***************** PP

                      CCSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE................................-EEEXSSHH CS
  NTP_transferase 176 ssGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae................................yWsDvGtld 236
                      ++G+Y +n ++++ +a+  +e lk+ +++i d l+k+ ++ +++ ++ +k  +                                +W+DvG+++
       CDO69180.1 322 KTGNYRWNAGMFVTKAAfLMELLKEYKPDIHDGLQKIARAWDDE-KLRQKVLDevwpglekiaidnavaepaaldrrvavvpatfGWDDVGDFS 414
                      *****************999999*********999887765444.222222224677************************************* PP

                      HHHHHH CS
  NTP_transferase 237 sllean 242
                      sl +  
       CDO69180.1 415 SLADLL 420
                      **9865 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
                      T-SEEEEEEETTTHHHHHHHHTT CS
  NTP_transferase  45 gieeiivvltqehsflveeqlke 67 
                      ++ ++++v+t+ +s++v++ +k+
       CDO69180.1 466 DMPDTLLVTTRARSQEVKRLVKK 488
                      56677999999999999998876 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.3   2.5e-09   7.6e-06       2     116 ..     138     268 ..     137     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.5e-09
                   EEEEESS-TTT.....TT.THHHHCC..CCCCHHHHHHHHHCTT..-CEEEEECSH...CHHHHHHTTC.TS-EEE-TTS.S-SHHHHHHHHHHHH. CS
  NTP_transf_3   2 viLAGGrSsRm.....gg.dKallpl..ggkpllervldalraa.gvdevvvvggd...eevlaalarl.gvrvvededp.gkgplaslaaalraaa 84 
                   vi AGG+++R+      + +K ll+l  +g++l++ + d+l ++ ++++  +v+g+   ++++++l++l +  ++ ++ + +   + +laaa+ a++
    CDO69180.1 138 VIPAGGAGTRLwplsrEEhPKFLLDLtlKGRSLIQATWDRLIPLsSAARTAIVAGPahvKSIKEQLPDLlPHNLFCEPSAkDSMAAIGLAAAVLALR 234
                   888********88875236*******99*************99954778888877734446777777773344444444424555668899998888 PP

                   SSSCEE.EEETT-TT-.-HHHHHHHHHCHHHHTS CS
  NTP_transf_3  85 dadavl.vlacDmPll.tpelverllaaaaasga 116
                   d da++  +a+D+    + ++++++++a + +++
    CDO69180.1 235 DPDAIIgSFAADHMISgDDAFLAAVAEAVEVAKK 268
                   8888654789996654044557777777765555 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.5e-07   0.00045       1      38 [.     457     494 ..     457     498 .] 0.91

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-07
  MannoseP_isomer   1 vGvedlvvvetkdavlvadkdkvqdvkkvveelkaegr 38 
                      +Gv+dlv+v+  d++lv+++ + q+vk++v++ +++g 
       CDO69180.1 457 LGVDDLVIVDMPDTLLVTTRARSQEVKRLVKKCRDAGW 494
                      69*****************************9988765 PP

>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.6e-06    0.0047      42     108 ..       7      76 ..       3      91 .. 0.80
   2 ?   -3.3   0.0       2.5   7.5e+03     125     144 ..     351     370 ..     348     373 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.6e-06
        CK2S  42 nvklygtplrdfpdlqerLrekqleal....eevlakLrekleelqkvrdsleklvrdalqlyeekadkls 108
                 ++++++ p ++ ++l  +L+++q++ +    + ++a+Lr+++ el++++ sle++vr++ q +++++  l+
  CDO69180.1   7 QSASTNPPAQAAGGLPIELMFRQIMDAvhksQMEIAELRSECHELRQANASLERQVREGIQNNNGTSR-LG 76 
                 4556777889999999999999987543333889***************************9998876.55 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
        CK2S 125 mlewlqdiermyrseyllkk 144
                 + ++lq+i+r + +e l+ k
  CDO69180.1 351 IHDGLQKIARAWDDEKLRQK 370
                 56889999999998877766 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     6e-05      0.18       3      59 ..     137     199 ..     135     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
                 EEEECTTSSCTT....-SSS-GGGSE..ETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHH CS
        IspD   3 vvipAAGsGkRm....kaglpKqfle..lkgqtllehtvdallaskavdkivvvvseddteef 59 
                 vvipA G G+R+    ++++pK +l+  lkg++l++ t d l   ++  +  +v  + +++ +
  CDO69180.1 137 VVIPAGGAGTRLwplsREEHPKFLLDltLKGRSLIQATWDRLIPLSSAARTAIVAGPAHVKSI 199
                 8**********8666579****99762269*********999987777777766666555544 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6    0.0001       0.3      20      49 ..      34      63 ..      24      74 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
        ZapB 20 itlLqmeieeLkeeneelkeenreleeene 49
                + + qmei+eL+ e  el + n+ le+++ 
  CDO69180.1 34 VHKSQMEIAELRSECHELRQANASLERQVR 63
                555566666666666666666666664433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3419.79
//
Query:       CDO69181.1  [L=277]
Description: hypothetical protein BN946_scf185042.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-20   73.3   0.1    2.6e-18   66.8   0.0    2.2  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.5e-22   2.6e-18       6      86 ..      13     100 ..       9     112 .. 0.90
   2 !    5.5   0.4   0.00094        17     154     181 .]     107     138 ..      92     138 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.5e-22
                 --SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH........--SS---S--B---EEETTEEEEEB-------- CS
   Gti1_Pac2   6 iettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeees........gikRWTDGvsWSpSrilgnfLvYreldkkrakk 86 
                 +++ +da ++++av +g+l+ v  Rl +++r   ++ G ++v+ee++s         i+R+T G sW+pSr  +nfL+Y e d+   ++
  CDO69181.1  13 VRNVRDAEIILHAVATGLLPMVMHRLADEDRL-ALAPGCIYVWEERSSnpleatgqEIQRFTEGRSWGPSRARDNFLIYYEKDSPARNS 100
                 78899***************************.9**************9*****999************************98766555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.00094
                 -------EEEEEEEEEETTT....EEEEEEE- CS
   Gti1_Pac2 154 kfkkdgLvKkTisvtlkgke....lhlisYyk 181
                   +  +++K+T+sv ++  +    +hl +Yy+
  CDO69181.1 107 MRHAPQFIKQTYSVYVDYPKnikkWHLNAYYT 138
                 334557*******99887766777*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2028.49
//
Query:       CDO69182.1  [L=156]
Description: hypothetical protein BN946_scf185042.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-35  120.8   0.2    7.5e-35  120.4   0.2    1.2  1  GLTP            Glycolipid transfer protein (GLTP)
  ------ inclusion threshold ------
       0.13   12.7   0.1        1.1    9.8   0.0    2.1  2  Streptin-Immun  Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> GLTP  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.2   8.4e-39   7.5e-35      36     148 ..       9     111 ..       2     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 8.4e-39
                 HHHHHHTT....T-SBHHHHHHHHHHTT-TT..STT-HHHHHHHHHHHHHHHHHHHHHHH....HTB-...HHHHHHHHHHHTGGGS-HHHHHHHHHHG CS
        GLTP  36 ekleeaykknpeeystleslveaEkeeglakkkkkesatrallwLkRgLeflaeflekllkdpkessreelselatkAYektLakyHgwlvrkaaklam 134
                 +k++ +y++ pe+++tle+lv +Ek e      kk++at++llwL RgL f++++l++  ++p+    eels++++kAYe+tL+k+H+++v++++++am
  CDO69182.1   9 QKVRARYDAAPEKSATLEQLVINEKGE------KKRTATEGLLWLLRGLSFTCKALQSAQANPT----EELSAAFSKAYEATLKKFHNFVVKGIFSVAM 97 
                 89**********************954......489****************************....9****************************** PP

                 GG--BHHHHHHHTT CS
        GLTP 135 kalPsrkdflkklg 148
                 ka+P+r+df+ kl+
  CDO69182.1  98 KACPYRADFYSKLA 111
                 ***********996 PP

>> Streptin-Immun  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.083   7.5e+02      62      86 ..      63      88 ..      16      92 .. 0.74
   2 ?    9.8   0.0   0.00012       1.1      63      86 ..     124     147 ..     120     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.083
  Streptin-Immun 62 eklqnelskkide.yeelvrkldkfv 86
                     +  +els    + ye + +k+ +fv
      CDO69182.1 63 ANPTEELSAAFSKaYEATLKKFHNFV 88
                    45556777766543888888888887 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00012
  Streptin-Immun  63 klqnelskkideyeelvrkldkfv 86 
                     kl +el++ +   +++vr+l+kf 
      CDO69182.1 124 KLNEELNNWLSALDNIVRRLEKFY 147
                     67899*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1136.80
//
Query:       CDO69183.1  [L=202]
Description: hypothetical protein BN946_scf185042.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   21.9   0.0    0.00026   21.3   0.0    1.2  1  GAF_2     GAF domain
     0.0053   17.4   0.0     0.0064   17.1   0.0    1.3  1  GAF       GAF domain


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.9e-08   0.00026      36     133 ..      96     196 ..      74     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.9e-08
                 EEEEEES-TTSTT-S-B--..-TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE.-T.TS..---EEEEES......--HHHHHHHHH CS
       GAF_2  36 laawgeaeeefgaaldrpl..geglvgealrtgrpvilndleedpdkkglpaghaglrsflavPl.is.eg..rvvGvlnlyankppafdeedlelLee 128
                 l+   + ++  ++ +  ++  ++g++++a+ +++ v++ d+++ p   g+ a +   +s+++ Pl +  +g  + +Gvl l     ++fde+d++ Le 
  CDO69183.1  96 LLLGPFCGKPACQLINVAPglARGVCADAYCQRKTVLVRDVDAYP---GHIACDGETKSEVVCPLlLTvNGeeKAIGVLDLDCLALSGFDEQDQAGLEK 191
                 445555555666666665555999****************98855...44566777778888887655555226*******7778889**********9 PP

                 HHHHH CS
       GAF_2 129 laeqi 133
                 +a+++
  CDO69183.1 192 IARLV 196
                 99875 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.1e-07    0.0064      47     129 ..     114     196 ..      12     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.1e-07
                 T..TSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE....TTEEEEEEEEEE..SSSCSHHHHHHHHHHHHHHH CS
         GAF  47 n..grgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn....dgelwGllvlhn..psppftreelellqvladqv 129
                 +   rg+c+ ++ +++++++ d+++ p + +          +++s +v Pl+     +++ +G+l+l+    s  f++++ + l+ +a++v
  CDO69183.1 114 PglARGVCADAYCQRKTVLVRDVDAYPGHIA-------CDGETKSEVVCPLLLtvngEEKAIGVLDLDClaLSG-FDEQDQAGLEKIARLV 196
                 135788999************9998888888.......47899999******44556888*********76555.************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1504.82
//
Query:       CDO69184.1  [L=821]
Description: hypothetical protein BN946_scf185042.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-127  424.0   0.1   3.4e-127  424.0   0.1    2.0  2  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
    7.7e-07   28.2   0.5    0.00014   20.7   0.0    2.2  2  tRNA-synt_1g     tRNA synthetases class I (M)
    6.5e-06   26.5   0.5    1.9e-05   25.1   0.0    2.1  2  DALR_2           DALR domain
    5.3e-05   21.7   0.0    0.00052   18.4   0.0    2.1  2  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
  ------ inclusion threshold ------
      0.084   12.9   0.0        0.2   11.6   0.0    1.6  1  2H-phosphodiest  Domain of unknown function (DUF1868)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.0   0.1  9.3e-131  3.4e-127       2     297 ..      33     470 ..      32     474 .. 0.98
   2 ?   -1.3   1.8       0.3   1.1e+03     155     178 ..     796     819 ..     779     821 .] 0.67

  Alignments for each domain:
  == domain 1  score: 424.0 bits;  conditional E-value: 9.3e-131
                   ---SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHH.TT-EEEEEEEBB--SHHHHHHHHHTTS-.......................... CS
  tRNA-synt_1e   2 vkpleekkvtlYvCGptvydashlGhaRslvafDilrrilqa.lgYdvqfvqnvtDidDkiikrareeeks.......................... 71 
                   ++p++ ++v++Y CGptvydash+GhaR++v+ Dilrri+ + + Ydv+fv n+tDidDkii rar++++                           
    CDO69184.1  33 FVPINGRHVKWYNCGPTVYDASHMGHARNYVTQDILRRIMTDyFRYDVHFVMNITDIDDKIIIRARHNHLIanlrsettsltptlieqvreawvsyv 129
                   5678999*********************************998**************************999************************* PP

                   ................................................................................................. CS
  tRNA-synt_1e  72 ................................................................................................. 71 
                                                                                                                    
    CDO69184.1 130 qskvskglpeserpsagseqaqwpklverfrdkewkqqglqrdekfemhfsaaaitfnallkaeeyfksgqtgvenahtlidssqdvlalaldkqlg 226
                   ************************************************************************************************* PP

                   ........HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TT....S-EEE-GGG-TTTTTTTT--HHHHHHT--- CS
  tRNA-synt_1e  72 ........vkelaekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavsd....gdvyfdvskkeeYgklskqnleelelgaeg 156
                           +++la+++++ef+kd++ L v+ p++ +rv+e+v+ei+ +ve ++++g+ Y+v+     ++ +fd+ + ++Y+kl++++++++el +eg
    CDO69184.1 227 gtvndhtiFRSLAAYWEAEFFKDMRRLRVRDPDTLTRVTEYVPEIVSFVEGIVKNGFGYVVDGsvyfDTRAFDKADGHTYAKLEPWSKGNRELLEEG 323
                   *************************************************************97777788888888999*****************99 PP

                   -S-.....-S-SSTT-EEEEEE--TTS--B--TTSSEEE-SSHHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--E CS
  tRNA-synt_1e 157 evs.....eekkdkkDfaLWkaskegepswdsPwgkGRPGWhieCsvmaskllgseidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghl 247
                   e++      +k+++ DfaLWkask+gepsw+sPwg+GRPGWhieCsvmas++lg+++dihsGGiDLafPhh+ne+aqsea+++ + +v+yf+h+ghl
    CDO69184.1 324 EGAlsaasGGKRSPADFALWKASKPGEPSWPSPWGEGRPGWHIECSVMASAILGDNMDIHSGGIDLAFPHHDNEMAQSEAYHNcSAWVNYFIHTGHL 420
                   9988888899*************************************************************************99************ PP

                   EETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-HHHHH CS
  tRNA-synt_1e 248 kiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfkeelle 297
                   +ieg kmsksLknfiti ++l+k+++rqlRl++l++ ++ ++df+e+l++
    CDO69184.1 421 HIEGLKMSKSLKNFITIDEILQKYTARQLRLAFLTQLWNAKVDFSESLMT 470
                   ***********************************************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
                   ---S--S-SSTT-EEEEEE--TTS CS
  tRNA-synt_1e 155 egevseekkdkkDfaLWkaskege 178
                   ++e + +kk+++Df  W++++e +
    CDO69184.1 796 QKEWTLQKKRHEDFLEWQKQQEKD 819
                   333446899999999999887765 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0017       6.1      12      57 ..      52      98 ..      47     119 .. 0.79
   2 !   20.7   0.0     4e-08   0.00014     314     358 ..     413     457 ..     389     473 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0017
                  S---HHHHHHHHHHHHHHHHHHHT.T-EEEEEEEE---SHHHHHHHH CS
  tRNA-synt_1g 12 gklHlGhllevisaDifaRykrlr.geevlfvcgtDehGtpielkAe 57
                  ++ H+Gh+++++  Di+ R       ++v+fv        +i ++A+
    CDO69184.1 52 DASHMGHARNYVTQDILRRIMTDYfRYDVHFVMNITDIDDKIIIRAR 98
                  578****************8765448999998766555566666665 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 4e-08
                   -EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS CS
  tRNA-synt_1g 314 kvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaea 358
                     + +++l +eg K+SkS +++++++e+l++++a +lR  ++++ 
    CDO69184.1 413 YFIHTGHLHIEGLKMSKSLKNFITIDEILQKYTARQLRLAFLTQL 457
                   56679*********************************9777643 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   5.2e-09   1.9e-05       1      54 [.     499     556 ..     499     564 .. 0.72
   2 ?   -3.6   1.1       4.7   1.7e+04      24      38 ..     729     735 ..     717     749 .. 0.44

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.2e-09
                 HHHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHH....HHHHHHHHGGGT- CS
      DALR_2   1 kFeeaMdDDFNTaeAiavlFelakeiNralkeedkaaasal....kallrelaevLGl 54 
                 +F++a+ D FNT+eAi vl +l+ + N + ++ d + +  l    ++ + ++  ++Gl
  CDO69184.1 499 AFRAALCDSFNTPEAINVLRDLVSKTNVYIRAPDGNLEIGLiqrvARWVGDMLRIFGL 556
                 59**************************777777777655521113444444666666 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.7
                 HHHHHHHHTT-HHHH CS
      DALR_2  24 keiNralkeedkaaa 38 
                 k++++        aa
  CDO69184.1 729 KAARK--------AA 735
                 22222........11 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.035   1.3e+02      32      56 ..      48      72 ..      42      85 .. 0.85
   2 !   18.4   0.0   1.4e-07   0.00052     521     592 ..     384     455 ..     378     465 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.035
  tRNA-synt_1 32 PyvtGslHiGhalaktlkdiviryk 56
                 P v  + H+Gha + + +di+ r+ 
   CDO69184.1 48 PTVYDASHMGHARNYVTQDILRRIM 72
                 6777789**************9975 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.4e-07
  tRNA-synt_1 521 leGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltlil 592
                  + G+D  +    + + +s a  + + + + ++h   +  eG KmSKsl+N i  +++++ky a  lRl+ ++
   CDO69184.1 384 SGGIDLAFPHHDNEMAQSEAYHNCSAWVNYFIHTGHLHIEGLKMSKSLKNFITIDEILQKYTARQLRLAFLT 455
                  566777777777777777777777778888888888999****************************98764 PP

>> 2H-phosphodiest  Domain of unknown function (DUF1868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05       0.2      40      90 ..     643     693 ..     601     702 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.5e-05
                      SGGGGGEEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHHHH CS
  2H-phosphodiest  40 speadklallPpsSlHmTvfegvieerrktdlWpadLpldaplqkitalla 90 
                      s++ +++a +P +Sl    ++ v+++r     Wp++Lp++ +  ++ ++l+
       CDO69184.1 643 SDFPARYACVPSDSLLTGRLNCVCDARTPSLQWPQNLPRTPSTLDVARALR 693
                      677899*********************************999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5333.84
//
Query:       CDO69185.1  [L=270]
Description: hypothetical protein BN946_scf185042.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1916.98
//
Query:       CDO69186.1  [L=990]
Description: hypothetical protein BN946_scf185042.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00098   19.4 114.0        0.5   10.6  20.9    6.5  6  ATG16           Autophagy protein 16 (ATG16)
     0.0039   16.9  14.1     0.0039   16.9  14.1    5.5  5  SHE3            SWI5-dependent HO expression protein 3
  ------ inclusion threshold ------
       0.15   12.0  16.2        1.9    8.5   0.0    6.9  7  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.33   10.7   4.5        6.7    6.5   0.3    2.4  2  zf-CCHC_4       Zinc knuckle
        1.3    9.0   9.1       0.47   10.4   2.8    3.7  3  Shugoshin_N     Shugoshin N-terminal coiled-coil region
        1.5    8.8  15.3        1.6    8.7   4.9    2.3  2  CLIP1_ZNF       CLIP1 zinc knuckle
        5.9    7.3  97.0      0.061   13.8   9.4    6.9  5  Fez1            Fez1
        9.1    5.1 109.9       0.13   11.1  10.4    6.2  7  Spc7            Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3  14.1    0.0022       4.8      30     154 ..     239     355 ..     230     358 .. 0.67
   2 ?   -0.7  15.4      0.64   1.4e+03      55     167 ..     362     435 ..     348     455 .. 0.39
   3 !    9.6  25.1   0.00044      0.98      35     171 ..     468     608 ..     447     621 .. 0.78
   4 !    8.2  20.9    0.0012       2.6      57     185 ..     616     773 ..     606     774 .. 0.83
   5 !   10.1   8.3   0.00031       0.7      29     134 ..     699     792 ..     696     798 .. 0.80
   6 !   10.6  20.9   0.00022       0.5       1     145 [.     746     894 ..     746     900 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0022
       ATG16  30 rtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqklee....klkedeer 124
                  t+al+++ a l   ++s    k++++++ e+++s     s  s+++ +l++++ +l++ l ++  ++  l+ r   ++ e +++ e    +  +  +r
  CDO69186.1 239 GTKALQDRIADL---MTS----KTPSSPRPESRTS-----SGGSTHLVELQSQVERLQARLDAAEDEKRRLQARADGAEREASQRIEslvaERDQHVAR 325
                 556666666666...222....2222233333333.....457999*****************************988877766655111144455567 PP

       ATG16 125 laeleaeraaletklkdreeelrekeklvq 154
                 + elea  ++ e++l++r+++++ ++++ +
  CDO69186.1 326 VSELEAAARTAERALSERDATIEALQRAAE 355
                 778888888888888888888888777766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.64
       ATG16  55 kksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklv 153
                 +k++ e ea+ ++     ++k+++ e+++aql+e  ++   +++e+a  l+++n+e++ le++                                    
  CDO69186.1 362 EKTRAEGEARLRD----VQSKLEDREALVAQLKEAIEAREGEQSESAAVLKAKNAEIALLEARV----------------------------------- 421
                 1122222222222....34444444444444444444444444444444444444444444433................................... PP

       ATG16 154 qdlqDElsaLqlql 167
                  +   El+  + +l
  CDO69186.1 422 AKAYAELEEERREL 435
                 33333333333333 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00044
       ATG16  35 eaenaklekaaasakssksskksakekeasasq.snskqsakiqsleqklaqlreelaely....ksrgelaqrllelneelqkleeklkedeerlael 128
                 e+  a+le++  ++  ++s+ + a + ++ a + +n+  ++++q l++k+a+l + l+++     +  +  ++r+++ +e  ++ +++l e +++++++
  CDO69186.1 468 EDLIASLEEQLRAQARPPSPGSMARQATSAA-EiDNEMLRDQVQHLQKKIATLEDMLEDTRaaneRDEAVAQDRVRRYKEREEAMRKELLEGRQEVERV 565
                 4444444444444443333443333333333.35889999************9987766542222788889**************************** PP

       ATG16 129 eaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaE 171
                  +  ++ + ++++ ee+lre + ++++ + E+++L+ +   +E
  CDO69186.1 566 LKAEEKARLRVEEMEEALRENTVALENARAEIETLRNEIADLE 608
                 ***********************************99887777 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0012
       ATG16  57 sakekeasasqsnskqsakiqsleqklaqlreelaelyksrge..laqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklv 153
                 ++ ek+a+    +++ +++ ++l++++a+l+++la++  s g+  +a+ +++l e  q+l+e+lk+ +++la+ +a +++l+   ++r++el+  +k +
  CDO69186.1 616 TSAEKLAEL---APRANSERAKLQEEIAELKQQLAQARASGGDgaSAEDIRSLLEDKQTLQESLKRTQAELADQHAIVEELRALANERTAELETIRKKL 711
                 333344443...4477788899999999999999999888654228889********************************************999888 PP

       ATG16 154 q..............................dlqDElsaLqlqlnqaEeklrklekENkeLv 185
                 +                               l+  ++ Lq +   aE++ r le+ENk L+
  CDO69186.1 712 NrdtpvngyeakpppspsskhdlavardeitGLKHIVQELQKENAAAEQRCRALEAENKLLL 773
                 88**********************6666655555556889999999*************997 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00031
       ATG16  29 drtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlae 127
                 +rt++le+ ++kl++            ++ +  ea++ + +++++++++   ++++ l++ ++el+k+++  +qr ++l++e + l +++++ +e l+ 
  CDO69186.1 699 ERTAELETIRKKLNRD-----------TPVNGYEAKPPP-SPSSKHDLAVARDEITGLKHIVQELQKENAAAEQRCRALEAENKLLLSETEQLREDLKV 785
                 6888888888888444...........222233333333.466778899999*********************************************** PP

       ATG16 128 leaeraa 134
                 le+++++
  CDO69186.1 786 LEEDVER 792
                 *999876 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00022
       ATG16   1 eilaqLreRdarqekafaeliqaynrLldrtsaleaenaklekaaasaks.sksskksakekeasasq......snskqsakiqsleqklaqlreelae 92 
                 +i+++L++ +a  e+  ++l +  + Ll  t++l++  + le+  +++ + ++++ + + e++  + +       + + ++  ++ e+++ qlr+ la+
  CDO69186.1 746 HIVQELQKENAAAEQRCRALEAENKLLLSETEQLREDLKVLEEDVERSLArEEAMLSGDAESSPPTPSmddvqaLQRSYKELKTKYETEVEQLRKRLAD 844
                 799*****************9999999**********99999888888877333333322222222222333323344445555566666666666666 PP

       ATG16  93 lyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreee 145
                 +     ++a ++ +ln+e+ +le+ ++++  r +ele+e+++l++kl++ +++
  CDO69186.1 845 V---EMKSARQVHDLNKEIGELESLIESKIYREDELEREVERLKDKLSRSQKK 894
                 5...557899*************************************998765 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.5     0.041        91     104     224 ..     274     391 ..     234     395 .. 0.69
   2 !    5.5   1.6    0.0055        12      31     110 ..     388     467 ..     371     483 .. 0.77
   3 ?   -1.3   2.9      0.64   1.4e+03      53      87 ..     501     535 ..     490     565 .. 0.59
   4 ?   -3.6   9.8       3.2   7.2e+03      67     199 ..     575     711 ..     557     723 .. 0.58
   5 !   16.9  14.1   1.8e-06    0.0039      45     185 ..     739     885 ..     729     900 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 104 teleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekqleelqerissndkdidtkldsynnkkknlesieeeknkkllkkleslase 202
                  el+ ++erl++  da  d +++ + + +    e ++++e+l  e++ q     +++   +++ +  l++ +   ++l+++ e++ k ++k+   +  e
  CDO69186.1 274 VELQSQVERLQARLDAAEDEKRRLQARADGAEREASQRIESLVAERD-QHVARVSELEAAARTAERALSERDATIEALQRAAEQASKDVEKTR--AEGE 369
                 45677788888888888888888888777777777888888888877.455556666677777777787777777888877777777777643..3344 PP

                 XXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 203 ldleswlelykelkelileyae 224
                   l    ++ ++ + l+ + +e
  CDO69186.1 370 ARLRDVQSKLEDREALVAQLKE 391
                 4444455555555555555555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH CS
        SHE3  31 eklelaqkkeskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeel 110
                 +  e  +++e +  e+ a lk  N  +  l  R  +   +le+e  el  +v+el+   ++     e+  +   + + el
  CDO69186.1 388 QLKEAIEAREGEQSESAAVLKAKNAEIALLEARVAKAYAELEEERRELGGQVDELRRAGQETIALYEERLSVADTRRYEL 467
                 445777999*********************************************98876665555555555555555555 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  53 ENdnLsslLkRKerrlkdlekelselkesveelkl 87 
                 +N++L   ++  ++++  le+ l++ +  +e  ++
  CDO69186.1 501 DNEMLRDQVQHLQKKIATLEDMLEDTRAANERDEA 535
                 67777777777777777777777776666554332 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHSSSXXXX CS
        SHE3  67 rlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklkl........enekqleelq 157
                 r+ ++e+ l e +   e++++e ++l++++ +++   ++ +   e+l      l    +  + + q+ei eLk++l + +         e  + l e +
  CDO69186.1 575 RVEEMEEALRENTVALENARAEIETLRNEIADLEGLAATASTSAEKLA----ELAPRANSERAKLQEEIAELKQQLAQARAsggdgasaEDIRSLLEDK 669
                 778888888888888888888888888877777777777776666664....35566667788888888888888877664111111113333334444 PP

                 XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 158 erissndkdidtkldsynnkkknlesieeeknkkllkklesl 199
                 ++++++ k  +++l +    +++l  + +e++ +l+++ ++l
  CDO69186.1 670 QTLQESLKRTQAELADQHAIVEELRALANERTAELETIRKKL 711
                 444444444444444444444444444444444444444444 PP

  == domain 5  score: 16.9 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH...HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHH CS
        SHE3  45 enlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssasetel...eeelerlkvqYd...alvdsqkeYkehYqqeiee 137
                 ++++ lkh  + L+      e+r + le e++ l ++ e+l+++ k l++++e+s a+e+++    +e +    + d   al  s ke k +Y++e+e+
  CDO69186.1 739 DEITGLKHIVQELQKENAAAEQRCRALEAENKLLLSETEQLREDLKVLEEDVERSLAREEAMlsgDAESSPPTPSMDdvqALQRSYKELKTKYETEVEQ 837
                 5667777777777777777899********************************9998876522234555555666611155666666677******** PP

                 HHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
        SHE3 138 Lkesleklklenekqleelqerissndkdidtkldsynnkkknlesie 185
                 L+++l + +    +q+++l+++i + +  i+ k+   ++  +++e+++
  CDO69186.1 838 LRKRLADVEMKSARQVHDLNKEIGELESLIESKIYREDELEREVERLK 885
                 *********************************965444444444443 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.31     7e+02       5      13 ..     242     250 ..     241     250 .. 0.90
   2 ?   -3.9   0.1       6.7   1.5e+04       9      14 ..     325     330 ..     325     330 .. 0.92
   3 ?   -2.8   0.0       3.2   7.1e+03       4      19 ..     510     525 ..     509     527 .. 0.80
   4 ?    6.0   0.0    0.0053        12       2      14 ..     596     608 ..     595     609 .. 0.95
   5 ?    8.5   0.0   0.00085       1.9       6      21 ..     635     650 ..     633     652 .. 0.90
   6 ?    0.7   0.2      0.25   5.5e+02       1      14 [.     833     846 ..     833     848 .. 0.85
   7 ?    1.3   0.3      0.16   3.6e+02       1       9 [.     879     887 ..     879     889 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
  Pox_A_type_inc   5 rlRsRIsDL 13 
                     +l++RI DL
      CDO69186.1 242 ALQDRIADL 250
                     69******9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.7
  Pox_A_type_inc   9 RIsDLE 14 
                     R+s+LE
      CDO69186.1 325 RVSELE 330
                     89***9 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.2
  Pox_A_type_inc   4 srlRsRIsDLErqLse 19 
                     + l+ +I  LE  L++
      CDO69186.1 510 QHLQKKIATLEDMLED 525
                     67999**999987776 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0053
  Pox_A_type_inc   2 EmsrlRsRIsDLE 14 
                     E++ lR++I DLE
      CDO69186.1 596 EIETLRNEIADLE 608
                     999*********9 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.00085
  Pox_A_type_inc   6 lRsRIsDLErqLseCr 21 
                     l+++I +L++qL+ +r
      CDO69186.1 635 LQEEIAELKQQLAQAR 650
                     89***********988 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.25
  Pox_A_type_inc   1 rEmsrlRsRIsDLE 14 
                     +E+++lR R  D E
      CDO69186.1 833 TEVEQLRKRLADVE 846
                     69******988765 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.16
  Pox_A_type_inc   1 rEmsrlRsR 9  
                     rE++rl+++
      CDO69186.1 879 REVERLKDK 887
                     8*******9 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3     0.003       6.7      33      48 ..     926     941 ..     924     942 .. 0.90
   2 ?    5.6   0.5    0.0058        13      33      48 ..     969     984 ..     965     985 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.003
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                 +C+iC + GH++  Cd
  CDO69186.1 926 VCEICERPGHDIFTCD 941
                 8***********9997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0058
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                 +C+ C   GH++++C+
  CDO69186.1 969 ICEDCEERGHNAANCP 984
                 7**************8 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.9     2e+03      22      33 ..     596     607 ..     594     609 .. 0.62
   2 ?   10.4   2.8   0.00021      0.47      11      42 ..     750     781 ..     749     783 .. 0.91
   3 ?   -2.5   0.1       2.2   4.9e+03      23      35 ..     853     865 ..     852     868 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.9
  Shugoshin_N  22 kirelekevseL 33 
                   i +l++e+++L
   CDO69186.1 596 EIETLRNEIADL 607
                  566666666666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00021
  Shugoshin_N  11 eLAKsNsalslkirelekevseLlsENlnLRe 42 
                  eL K N a  +++r le+e+  LlsE  +LRe
   CDO69186.1 750 ELQKENAAAEQRCRALEAENKLLLSETEQLRE 781
                  6778999999*********************9 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.2
  Shugoshin_N  23 irelekevseLls 35 
                  + +l+ke+ eL s
   CDO69186.1 853 VHDLNKEIGELES 865
                  6789999999987 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.7    0.0065        15       4      15 ..     927     938 ..     927     940 .. 0.88
   2 ?    8.7   4.9   0.00071       1.6       4      17 .]     970     983 ..     970     983 .. 1.00

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0065
   CLIP1_ZNF   4 CdnCEvFGHdTe 15 
                 C++CE+ GHd+ 
  CDO69186.1 927 CEICERPGHDIF 938
                 *********986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00071
   CLIP1_ZNF   4 CdnCEvFGHdTedC 17 
                 C++CE+ GH++ +C
  CDO69186.1 970 CEDCEERGHNAANC 983
                 ************** PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.5     0.038        85     127     155 ..     270     298 ..     233     311 .. 0.62
   2 ?    2.5   4.3     0.076   1.7e+02      24      74 ..     317     367 ..     307     371 .. 0.84
   3 ?   13.8   9.4   2.7e-05     0.061      38     151 ..     370     481 ..     367     486 .. 0.85
   4 ?   -4.7  23.3         8   1.8e+04      48     148 ..     510     650 ..     502     670 .. 0.36
   5 ?   -2.5  34.2       2.6   5.7e+03      11     161 ..     638     859 ..     636     901 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.038
        Fez1 127 aeeleelkreverlraeLkeerqkkeeqa 155
                 +++l el+++verl+a+L   +++k + +
  CDO69186.1 270 STHLVELQSQVERLQARLDAAEDEKRRLQ 298
                 56777888888888888877666555433 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.076
        Fez1  24 aevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcene 74 
                 ae  q +  + +l a  r ++ +l+e++++i+ l+ ++e+ ++++e+  +e
  CDO69186.1 317 AERDQHVARVSELEAAARTAERALSERDATIEALQRAAEQASKDVEKTRAE 367
                 677778888889999999999999999999999999999999999998877 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.7e-05
        Fez1  38 aqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkre 136
                 a+lr++++kle++e+ + +l+e++e ++ e  +  + l+ k++e  ll+ +v k+ +el+e r+el  +  e ++a +e+ +  ++r +   +++ + e
  CDO69186.1 370 ARLRDVQSKLEDREALVAQLKEAIEAREGEQSESAAVLKAKNAEIALLEARVAKAYAELEEERRELGGQVDELRRAGQETIALYEERLS--VADTRRYE 466
                 789**************************************************************999776666666666665666655..56777888 PP

        Fez1 137 verlraeLkeerqkk 151
                 +e l a+L+e+ +++
  CDO69186.1 467 LEDLIASLEEQLRAQ 481
                 899999888876654 PP

  == domain 4  score: -4.7 bits;  conditional E-value: 8
        Fez1  48 eekeeeikeleesleektle....levcenelqrkkseaellrekvekleeelkelreelselsleeeeaa............................ 114
                 ++ +++i +le+ le+  +       v +++++r k+++e +r+++ +  +e++++ ++ +++ l+ ee++                            
  CDO69186.1 510 QHLQKKIATLEDMLEDTRAAnerdEAVAQDRVRRYKEREEAMRKELLEGRQEVERVLKAEEKARLRVEEMEealrentvalenaraeietlrneiadle 608
                 333333333333332222220000223333333334444444443333333333332222222221111111122111111111111111222222222 PP

        Fez1 115 ....lesdeakaqrqe..............aeeleelkreverlraeLkeer 148
                     +          +              ++e ++l++e+++l+++L++ r
  CDO69186.1 609 glaaT----------AstsaeklaelapraNSERAKLQEEIAELKQQLAQAR 650
                 22220..........0222222222223334555666666666666666665 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.6
        Fez1  11 EislLKqQLkdsqa.........evtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk...................... 78 
                 Ei+ LKqQL +++a         ++ + l++  +l+ +l+ ++a+l ++ + ++el++ ++e+t+ele++ ++l+r                       
  CDO69186.1 638 EIAELKQQLAQARAsggdgasaeDIRSLLEDKQTLQESLKRTQAELADQHAIVEELRALANERTAELETIRKKLNRDtpvngyeakpppspsskhdlav 736
                 899999999987762222222224444556667889999999************************999999999999999999998888887444444 PP

        Fez1  79 ............................kseaellrekvekleeelkelreelselsleeeeaa................................... 114
                                                                                +                                   
  CDO69186.1 737 ardeitglkhivqelqkenaaaeqrcraL----------------------------------Eaenklllseteqlredlkvleedverslareeaml 801
                 44444444444444433344443333330..................................234444444444444444444444444445555555 PP

        Fez1 115 ...........lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassFeqE 161
                            ++ d +  qr+ +e  ++ + eve+lr++L+  + k+ +q+++ ++E
  CDO69186.1 802 sgdaesspptpSMDDVQALQRSYKELKTKYETEVEQLRKRLADVEMKSARQVHDLNKE 859
                 6666666776544444445566677778888899999999998888888888887776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  16.1     0.044        99     171     276 ..     275     380 ..     269     385 .. 0.75
   2 ?   11.1  10.4   5.7e-05      0.13     133     232 ..     382     481 ..     370     498 .. 0.95
   3 ?    4.7  18.2    0.0053        12     149     253 ..     503     607 ..     489     615 .. 0.61
   4 ?    3.7  22.9     0.011        24     162     280 ..     545     674 ..     532     677 .. 0.78
   5 ?    8.0  14.2   0.00053       1.2     142     236 ..     598     711 ..     597     716 .. 0.61
   6 ?   -0.4  17.4      0.19   4.2e+02     139     259 ..     671     792 ..     662     803 .. 0.65
   7 ?    1.5  15.7     0.048   1.1e+02     180     262 ..     814     893 ..     776     901 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.044
        Spc7 171 eleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevs 269
                 el+++ ++l+++l+  +++++ l++      +e+ +++++l ae +++ ++++el++   + e +++e ++ ++ l+ + ++a + +e+++   e  ++
  CDO69186.1 275 ELQSQVERLQARLDAAEDEKRRLQARADGAEREASQRIESLVAERDQHVARVSELEAAARTAERALSERDATIEALQRAAEQASKDVEKTRAEGEARLR 373
                 566666666666666666666666666666677777888888888888888999999999999999999999999999999999999999988888888 PP

        Spc7 270 rlkeevk 276
                  ++++++
  CDO69186.1 374 DVQSKLE 380
                 8887776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.7e-05
        Spc7 133 RmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqlee 231
                 R  l+ +Lke +e +  +  e +++L+++++e+  l  ++ + +aeleee ++l  +++el    +e ++ + e+l+ +++   e+++ +a+l+eql +
  CDO69186.1 382 REALVAQLKEAIEAREGEQSESAAVLKAKNAEIALLEARVAKAYAELEEERRELGGQVDELRRAGQETIALYEERLSVADTRRYELEDLIASLEEQLRA 480
                 7889********************************************************************************************987 PP

        Spc7 232 l 232
                 +
  CDO69186.1 481 Q 481
                 6 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0053
        Spc7 149 egleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksele 247
                 e l+++ ++L+k+ + l+++l+++++  ++ e+ +++  ++++e e+  ++eL e r+e++++ +  e+ + +++e++e l e + ++e++++++++l+
  CDO69186.1 503 EMLRDQVQHLQKKIATLEDMLEDTRAANERDEAVAQDRVRRYKEREEAMRKELLEGRQEVERVLKAEEKARLRVEEMEEALRENTVALENARAEIETLR 601
                 344455566666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

        Spc7 248 eeiaea 253
                 +eia  
  CDO69186.1 602 NEIADL 607
                 666655 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.011
        Spc7 162 eeeldellpeleeekaeleeeleklqe...aaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                 +e  +++ +el e ++e+e+ l+ +++   ++ee+e+    +   Le++r e+++l +ei+ ++   a+  +  e+l+e    +++++++l+eeiae +
  CDO69186.1 545 KEREEAMRKELLEGRQEVERVLKAEEKarlRVEEMEEalrENTVALENARAEIETLRNEIADLEGLAATASTSAEKLAELAPRANSERAKLQEEIAELK 643
                 444455666666666777776666666555777777766667889****************************************************** PP

        Spc7 255 rvleeck.....gwsesevsrlkeevkalee 280
                 + l + +     g s++++++l e  ++l+e
  CDO69186.1 644 QQLAQARasggdGASAEDIRSLLEDKQTLQE 674
                 9999988343335688899998888888887 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.00053
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.....aaeeles...................idkeeLeelreelaelkaeie 216
                 e+l++++++le  +++ + + e+l el p+ ++e+a+l+ee+++l++     +     +                     +e+L+ ++ ela+++a +e
  CDO69186.1 598 ETLRNEIADLEGLAATASTSAEKLAELAPRANSERAKLQEEIAELKQqlaqaR-----AsggdgasaedirslledkqTLQESLKRTQAELADQHAIVE 691
                 567788888888888899999*************************9554441.....33333322222222443332224555555555555555555 PP

        Spc7 217 ekkkelaelqeqleeleeki 236
                 e+++  +e++++le++++k+
  CDO69186.1 692 ELRALANERTAELETIRKKL 711
                 55555555555555555554 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.19
        Spc7 139 gLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.......aaeeles.idkeeLeelreelaelkaeieekkkelaelqeql 229
                 +L+       e+l++ +++L++q + ++el    +e+ aele   +kl++       +a+   s + k +L+ +r+e++ lk  ++e++ke a  +++ 
  CDO69186.1 671 TLQ-------ESLKRTQAELADQHAIVEELRALANERTAELETIRKKLNRdtpvngyEAKPPPSpSSKHDLAVARDEITGLKHIVQELQKENAAAEQRC 762
                 344.......44555555555555555555555555555555555555554323222444333356689999999999999999999999999999999 PP

        Spc7 230 eeleekieelkeqkseleeeiaeaervlee 259
                  +le++ + l ++ ++l+e+++  e+ +e+
  CDO69186.1 763 RALEAENKLLLSETEQLREDLKVLEEDVER 792
                 999999888888888888888887777764 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.048
        Spc7 180 eeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                 ++ ++ lq+ ++el++  ++e+e+lr++la+++ + +   +++ +l++++ ele+ ie+   + +ele e+++ ++ l + ++
  CDO69186.1 814 MDDVQALQRSYKELKTKYETEVEQLRKRLADVEMKSA---RQVHDLNKEIGELESLIESKIYREDELEREVERLKDKLSRSQK 893
                 4455566666666666666666666666666666666...6666666666666666666666666666666665544433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2507  (0.139829); expected 358.6 (0.02)
Passed bias filter:                      765  (0.0426683); expected 358.6 (0.02)
Passed Vit filter:                       206  (0.0114898); expected 17.9 (0.001)
Passed Fwd filter:                       150  (0.00836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 3.20u 0.46s 00:00:03.66 Elapsed: 00:00:00.74
# Mc/sec: 4017.51
//
Query:       CDO69187.1  [L=201]
Description: hypothetical protein BN946_scf185042.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   33.9   0.9    3.3e-08   33.4   0.9    1.2  1  CAP_GLY   CAP-Gly domain


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.9   1.8e-12   3.3e-08       1      46 [.     152     201 .]     152     201 .] 0.87

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.8e-12
     CAP_GLY   1 vgdrvk.lkegrrGvvryvGpvpfakgewvGveldep...nGkndGsvkg 46 
                 +gd+v+ ++ g +G+ ry+G++++++g w+Gvel      +Gkn+Gsv g
  CDO69187.1 152 IGDHVRiESLGFEGILRYLGEIDGKPGLWAGVELSGGfagKGKNNGSVAG 201
                 6888866778999*********************9644459******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1330.28
//
Query:       CDO69188.1  [L=128]
Description: hypothetical protein BN946_scf185042.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-19   67.1   9.5    1.5e-18   66.5   9.5    1.3  1  Ribosomal_L34  Ribosomal protein L34
  ------ inclusion threshold ------
      0.093   13.4   2.9       0.31   11.7   2.9    1.8  1  U1snRNP70_N    U1 small nuclear ribonucleoprotein of 70kDa MW


Domain annotation for each model (and alignments):
>> Ribosomal_L34  Ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   9.5   1.6e-22   1.5e-18       2      44 .]      86     128 .]      85     128 .] 0.97

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.6e-22
                    --S----HHHHHCSSSHHHHHHSHHHHHHHHHHHTTSSS-SCC CS
  Ribosomal_L34   2 krtyqPskrkRkrkhGFraRmstknGrkvLkrRraKGRkrLsv 44 
                    +++yqPs+rkRkrkhGF++R ++  Grk+L+rRraKGR +Ls+
     CDO69188.1  86 GQEYQPSQRKRKRKHGFLSRKRSVDGRKTLARRRAKGRLYLSH 128
                    579***************************************8 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.9   3.4e-05      0.31       3      49 ..       4      83 ..       2     121 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
  U1snRNP70_N  3 LPpnLlkLFaprpplpylppldydpekrkt.kkkitGvaaflselke................................d 49
                  Pp++++L    pplp +  l ++   + +  +++t++ +fl++ ++                                +
   CDO69188.1  4 IPPSIARLLIRPPPLPAATALPRAATSSTSfISSVTPLRQFLPSTASstsllplgsllsrlnpdfsvpslftpvlqvrhN 83
                 7*************************9999999*********87766677777777777777777776666555443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 924.91
//
Query:       CDO69189.1  [L=883]
Description: hypothetical protein BN946_scf185042.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-27   97.2   0.0    1.5e-27   96.6   0.0    1.2  1  CLASP_N   CLASP N terminal


Domain annotation for each model (and alignments):
>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   8.4e-32   1.5e-27       2     226 ..      19     239 ..      18     240 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 8.4e-32
     CLASP_N   2 dekaeellaafegketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLl 100
                  +++++++ a+   ete+ w+   +++ ++  l +gn  + ++ +l++ l+ ++  i++al+s rt ls t+ + +   +  l+++++p++ ++lptLl
  CDO69189.1  19 RDELASVQDALSCTETEETWEGISRALARFAALCNGN-ASTYPADLVATLRASSRPISSALNSERTRLSGTATESIAMSVNALGRAFEPLIPHYLPTLL 116
                 56788889999779***********************.778********************************************************** PP

     CLASP_N 101 kllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRst 199
                 +l++ t k++ + a+ ++ a++++++ sp il+ l   ++dK+v++R+ +a+ + + l++f+     le+++  ++ie ++++   Dan  +R++ R+ 
  CDO69189.1 117 TLCSRTNKVMVTRAKGCIHAIIEHTQ-SPCILHYLAESMKDKSVSLRLAAAEAVMLCLNSFN--PPDLEKEQRAKEIEAIIRATAVDANADIRKVGRKI 212
                 **************************.9999*******************************..7777777777************************* PP

     CLASP_N 200 fweffkvwPsrAksllssldpkvrkal 226
                 f  +    P r +s  + l p++rk l
  CDO69189.1 213 FDAYKILLPGRVQSFTDPLTPTIRKYL 239
                 ************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 5906.08
//
Query:       CDO69190.1  [L=273]
Description: hypothetical protein BN946_scf185042.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-28   97.6   0.0    1.2e-27   96.9   0.0    1.4  1  Pro_racemase  Proline racemase
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.17   11.4   0.0    1.3  1  PhzC-PhzF     Phenazine biosynthesis-like protein


Domain annotation for each model (and alignments):
>> Pro_racemase  Proline racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   1.3e-31   1.2e-27      82     276 ..       1     234 [.       1     250 [. 0.80

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 1.3e-31
                   STHHHHHHHHHHHHHTT..SS-SE.........EEECEEEEEETTEEEEEEE..ECTST.....SEEEEEEE-S-BEEEEEEEEEEETT........ CS
  Pro_racemase  82 mcGsntigvvtvlletG..lvevq.........epetklsletpaGlvevta..ecrdg.....kvervslenvpsfvyaldvevevpg........ 152
                   mcG++ti++ ++l++t    v ++         e e +l+l++p+G+vevt+   c+++        +v++ +v sf++  d++vevp+        
    CDO69190.1   1 MCGHATIALGRFLIDTQdeEVFPKrrhiryneaEGECHLRLHAPCGVVEVTVpaVCEGDrirsdPEREVRFISVKSFAATVDLVVEVPEelqwqelr 97 
                   9*************98522333334666666666788999********99863256666444434578*******************9533333333 PP

                   .TEE..EEEEEEESSSEEEEEEGGGCTS-SSCC..CHHHHHHHHHHHHHHHHHHH--..-TTCSTTC-SEEEEEEEEEETTTTS......EEEEEEE CS
  Pro_racemase 153 .lGk..vkvDiayGGnfyaiveaeklgldleka..earelveageklrealneqlkv..qhpenedirevslveltgkkeraea......earnavi 236
                    +G+  vk+D+ayGG+fy+iv+ ++lg++  +   + ++l +a+ +l++ + ++ ++   h  + d++ ++ v+++++ e + +          +++
    CDO69190.1  98 dTGRhaVKIDVAYGGAFYVIVQEKELGFEGVRYgvDLKRLDAASATLKRLVGARKELfrGHGLESDLEYLYGVIVVDEGEGRVGlgglddGRVGVCF 194
                   35645599********************9765422789***********9977655422688889**********99998775555555366789** PP

                   ETTSEB-SS--HHHHHHHHHHHHHTTSS-TT-EEEEEETT CS
  Pro_racemase 237 isdkkvDRSPcGtgtsArlAvlaakGklkvgeefvqesii 276
                   ++d+++DRSP+G+g+sAr+A+  ak  l+ ge+++  s++
    CDO69190.1 195 FADQQIDRSPTGSGVSARVALARAKDLLQDGERVRFDSLL 234
                   ***********************************99987 PP

>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05      0.17      66     161 ..       1     118 [.       1     125 [. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
                 --HHHHHHHHHHHHHHCT-..............S-SCEEEEEETTEEEEE.........EEEEETCEECCEEEEE-SEEE.EEE-HHHHHHHHHHCCTS CS
   PhzC-PhzF  66 lcGHatlasahalaekglv..............asaetveletkaGilpvk........slkekddgeellielkfPvik.teevssedlallakllkl 141
                 +cGHat+a+ ++l+ ++                + ++ + l+ + G + v+        ++ ++ ++e+ +i++k+ +++ +  v+  ++ + ++l ++
  CDO69190.1   1 MCGHATIALGRFLIDTQDEevfpkrrhiryneaEGECHLRLHAPCGVVEVTvpavcegdRIRSDPEREVRFISVKSFAATvDLVVEVPEELQWQELRDT 99 
                 6*************9998777877777777777777778888888888887888888887777888887777776544441444555666666666666 PP

                 GG-TTS-BEEEESSSEEEEE CS
   PhzC-PhzF 142 aaqkalpiavkstglekviv 161
                    +a+ i+v+ +g+  viv
  CDO69190.1 100 G-RHAVKIDVAYGGAFYVIV 118
                 6.457777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2147.73
//
Query:       CDO69191.1  [L=2170]
Description: hypothetical protein BN946_scf185042.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-08   34.4   0.0    5.3e-08   32.6   0.0    1.9  2  RVT_1          Reverse transcriptase (RNA-dependent DNA polym
    6.8e-08   32.3   0.5    2.3e-07   30.6   0.5    1.9  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.13   12.9   0.0       0.41   11.2   0.0    1.8  1  Globin         Globin


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.72   4.3e+03      37      76 ..     904     943 ..     899     944 .. 0.83
   2 !   32.6   0.0   8.9e-12   5.3e-08       6     207 ..    1166    1398 ..    1157    1435 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.72
                 .-------HHHH.............HCCHTS--EEEEEEB CS
       RVT_1  37 llsenqpgfrpgrstldavedllkalkkkkkaklllklDl 76 
                 + +++ p   + rs+l+ ++++++ +++ k+++l++ +D 
  CDO69191.1 904 HNPPPKPTNARIRSILTETKHVNRLISAIKRNTLMTLIDA 943
                 5788888888999999999999999999999999999995 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 8.9e-12
                  .S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEE CS
       RVT_1    6 pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrkltafkv 97  
                  + +yR i + ++   +  + +++ L+ ++    +l++ q + +pg +  d +    ++ +++++++    +l  D +k+Fd+ + e  +  + a+++
  CDO69191.1 1166 LANYRGITCSNFVKNVPFSWLNHLLSSYItsLRILPDTQIATQPGVQARDLTsflAQIDAYAHRHNLTLFVLRRDQRKGFDRLEPEGFYDAVRAYGL 1262
                  5677777444444444344444445555566799999999*****8888888999****************************************** PP

                  T.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T................................TEEECTT CS
       RVT_1   98 ptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra..........................kgvtllrYaD 168 
                  p++li+l +s   +  + v+     +++++ +  + qG++ SPl ++l+++ +   l+                                +++  +D
  CDO69191.1 1263 PPTLIDLDRSAQDSVPYQVKTAHGLTQPFVLSGITQQGGPFSPLKSTLTTSMVTYWLEDLSppdgllhistyqsrasrphipddnlsLATQMCEAMD 1359
                  **********9977777777766689**********************999999999987699**********************999999****** PP

                  EEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE. CS
       RVT_1  169 DililskskeelqelleaveewlkesglkinpeKtklvl 207 
                  D lil +s ++ q++    e++ + +g + n+ K+ l++
  CDO69191.1 1360 DSLILRTSLKATQSAALLAERFQAAYGWETNWIKSLLYV 1398
                  ********************************9998775 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.5   3.8e-11   2.3e-07       1     232 [.     563     801 ..     563     812 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.8e-11
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH...TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal...ggflgasstsptgggggggnggavlsrfpltslfrrtfie 93 
                    lt N+ng     l +++   ++ +l++a+d+ v  ++E++  +  r  l +++   ++  ga +     +g+gg  g+ v ++++l +        
     CDO69191.1 563 LTINCNG-----LANVAKQHAVSNLISAHDPHVWVINETKSPHPMRDRLSADGylkYEAIGAKND----RGRGGKWGVIVGVKRSLHTQRLVIDES 649
                    689****.....566667778***************************99988887666666555....999**************5554444444 PP

                    TSSSSGCEEEEEEEEEEEEEEE....CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH....H.... CS
                    xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x.... RF
  Exo_endo_phos  94 fndlvaalrreplaakleqlni....ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap....v.... 177
                    f  + +al +     ++  ++        ++ + vr   + a +l v+ l  + ++++ v+GDfN++  + +s +++t+ +++  a     +    
     CDO69191.1 650 FSSRIVALDIIIASNNGRGYVHrfigIYAPWDPGVRGDDAHAFWLYVASLCEAAPHSWTVLGDFNTTLLASESLSPTTHDNHNRSAYsaflSrtsg 745
                    444444444333333333333355566666666666666777777777777777777888*************************99666505556 PP

                    ........SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEEECCHHEECTSSCSSS CS
                    ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 178 ........glyllgggptptyvtraggsrlDrilasp.alalfrsgvlppplalvrrealtlSD 232
                            +       +  + +++ag s +Dr+ +s  + + ++  +lp+  ++        +D
     CDO69191.1 746 idlwlaqnDSDARIHYTCKSPTRHAGLSVIDRVAVSRiGITAGTCTTLPDFIPA--------TD 801
                    777888988888888888888889999999******999999988888887765........44 PP

>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-05      0.41      10      55 ..     923     967 ..     913     980 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.9e-05
                 HHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHH CS
      Globin  10 ekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspk 55 
                 ++v+  + ++ ++ l  l +a+p+++++F +f d +  ++  +   
  CDO69191.1 923 KHVNRLISAIKRNTLMTLIDAHPWAQRYFVHFTD-TAMDSAYHADG 967
                 55555778899999******************88.54555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.46
# Mc/sec: 14321.35
//
Query:       CDO69192.1  [L=253]
Description: hypothetical protein BN946_scf185042.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1833.79
//
Query:       CDO69193.1  [L=861]
Description: hypothetical protein BN946_scf185042.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-182  608.2  24.6   1.4e-182  608.2  24.6    2.7  2  eIF-3c_N       Eukaryotic translation initiation factor 3 sub
    1.1e-15   58.1   0.1    4.2e-14   52.9   0.0    2.9  2  PCI            PCI domain
     0.0014   18.9   3.1       0.54   10.5   0.2    3.5  3  Inhibitor_I10  Serine endopeptidase inhibitors
  ------ inclusion threshold ------
       0.97   10.0  11.9        2.4    8.8   4.0    4.0  3  DUF2408        Protein of unknown function (DUF2408)
        8.6    6.1  15.6       0.12   12.1   5.7    2.7  3  AAA_11         AAA domain


Domain annotation for each model (and alignments):
>> eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.8   8.6         5   1.8e+04     131     190 ..       5      67 ..       2      80 .. 0.43
   2 !  608.2  24.6  3.8e-186  1.4e-182       7     592 ..      85     640 ..      79     641 .. 0.90

  Alignments for each domain:
  == domain 1  score: -7.8 bits;  conditional E-value: 5
                 XXXXXXXXXXXX..XXXXXXXXXXXXXXX.................................. CS
    eIF-3c_N 131 yredPeeeeeee..eedededdegedeededek.svkateavkkaseskvekeeeedeeteee 190
                 +r++ ++++e +  ee+e  ++e+e+ +  + + +++ ++++k+++es+++ ee +dee++e+
  CDO69193.1   5 FRQAGDSDSESSssEEEELMSSEDEAPKPAAPAgKPVMSRFLKTQGESSSSDEESSDEEESEA 67 
                 555555544433003333344444444433333134556666666666444444333333332 PP

  == domain 2  score: 608.2 bits;  conditional E-value: 3.8e-186
                 T---S--S-S-----SSGGGGTTTS-SSTTTTTTT---SSSHHHHHHHHHHH-HHHHHH..HH--S--XXXXXXXXXXXXXXXXX.....XXXXXXXXX CS
    eIF-3c_N   7 sseessdeedtkrVVksaKdKrfeeltsiiktiknakkikdlvklleeFdklnkalekaksqkenvktPrlyikvlaeledflnel.wedkeakkklsk 104
                 +s++++ +ed+krVVksaKdKr+ee++ + k + na ki+d+v +++eFdkl +++++   q+ ++ +P ++i++la+le  ln +  +dke kkk+++
  CDO69193.1  85 ASSDEESDEDVKRVVKSAKDKRLEEMEATGKVMDNALKINDWVAISNEFDKLIRMVQRQ--QNVSEPVPPFFIRTLANLETSLNAAvAKDKESKKKMNA 181
                 445567899*************************************************5..55578899***************861579********* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............................................. CS
    eIF-3c_N 105 nnakalntlrQkvkKynkqfeddikkyredPeeeeeeeeedededdegedeededeksvkateavkkaseskvekeeeedeeteeeklskkekkekvkm 203
                 +na+al +++QkvkK +k++e+++k+++edPe +e e ++  + + +    +         +++ k          + +dee+e+e+++++ k      
  CDO69193.1 182 SNARALTAMKQKVKKISKEYEQELKRFQEDPEAFEREYQQIVAPEVAPAPVK---------AKKAK----------KADDEEEEDEDFTTVGK------ 255
                 **********************************998877666654443333.........22222..........22333333333333332...... PP

                 XXXXXXXXXHHHHHHHHHHHHHHTSSSXXHHHHHHHHHHHHHHXSTCCHHHHHHHHHHHHHHHHCCHTSSSXXHHHHHHHHHHHHHHHHHHHHCTTGCC CS
    eIF-3c_N 204 fekkeeitvevvikklkeilsaRgkkttdrseqielleeLlkiaeekelkvkikfsiisarfdvnaklseymkievwkkaleeinslldilvananivv 302
                   k  + t e ++k l+ + + Rgkk+tdr eqi+ le+Ll++a ++++++++ +++++arfd+n+ ++++m+i+ w +a +e+ +l+ i+v+++   +
  CDO69193.1 256 GGKGIQFTPENIFKNLQVVQENRGKKNTDRMEQIRILEKLLEVAITPYQRIRVLLALLAARFDYNSSVATHMPIDLWIAAQKEVDQLIAIVVKEPGYSI 354
                 467889999****************************************************************************************** PP

                 XTTTXSSSXTTTTTTXXXXXXCCCCCSHHHHHHHHHHHHHHHHHHHSXTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCXXTCHHHHHHHHHHHTTTTSX CS
    eIF-3c_N 303 seevadeseeledetkedadgvirvrGsilafverlddEfvkslqniDpHsndYverLkdEksllaliervqkYlErtgdskevarvylrriehiYYKf 401
                  e  +d ++  e  ++ ++dg +r+rGs+++fv+rlddEf+kslq+iDpH  +Yv+rLkdEk l+ +i r+q   E+t+++  +arv++rr+ehiY K+
  CDO69193.1 355 QEITEDYDDLVERSPATEKDGIVRIRGSVISFVDRLDDEFTKSLQHIDPHGTEYVDRLKDEKVLYLTICRAQALYEKTKQEDPLARVIMRRLEHIYSKP 453
                 99999999999999999********************************************************************************** PP

                 HHHHHHHHHHCHHCHHSXSSXHHCCTTXTTHHHHHHHHHHHHCTTSSXHHHHHHHHHHHHHHHHHHSXHHHHHHHHHHHXXSHHHHCSSSCHHHHHHHH CS
    eIF-3c_N 402 eevieaeeeslissfikvkekskekeataessdalmdkLckliykddeerirtrAiLchiyhhAlhdnfvkArDllLmShlQdniqhaDistqiLyNRt 500
                 + v++a e ++ +s ik         ++ + +++l++ Lc  +yk ++  +rtrA+Lchiyh Alh++f++ArD+lLmShlQ++i++aD++tqiLyNRt
  CDO69193.1 454 DAVVQALEATAATSDIKPSIL----LSSDSPTSSLIHALCVHLYKSGNTLLRTRAMLCHIYHYALHNDFHTARDMLLMSHLQESIHNADVATQILYNRT 548
                 ****76665555555543332....233344567***************************************************************** PP

                 HHHHHHHHHHTTXHHHHHHHHHHHHTXTTHHHHTTXXXHHHHHHHHXSHHHHHHHHTTXXCCCXXXHHHHHHHHHHHHHHHHHHHHHHHHCT CS
    eIF-3c_N 501 mvqlGlcAFrqglikeahqaLsdllstgrvkElLgQgvlqrrqhektaeqekierrrqlPyHmhiNleLlecVyLvcamLlEiPamaaaesd 592
                 +vqlGl+AFr glikea+ +L+d+ +t+rvkElL+Qgv q+r++  t+eqek er+rqlP+HmhiN eLle+ +Lv++mL+EiP +a+ +s+
  CDO69193.1 549 VVQLGLSAFRCGLIKEAQATLQDIFATQRVKELLAQGVHQQRYQVLTPEQEKAERQRQLPFHMHINTELLEAAFLVSSMLVEIPLLASIDSE 640
                 ***************************************************************************************98875 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.098   3.5e+02      43      63 ..     288     308 ..     261     348 .. 0.77
   2 !   52.9   0.0   1.2e-17   4.2e-14       2     105 .]     673     779 ..     649     779 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.098
                 HHHHHHHHHHHHHHCESEEEH CS
         PCI  43 ekkvrerllrqvskiyssisl 63 
                 + ++ e+ll+  + +y++i++
  CDO69193.1 288 QIRILEKLLEVAITPYQRIRV 308
                 56899999999999*****96 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 1.2e-17
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH....CESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEET CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvsk....iyssislerlaklldlsvdevEkilvklIrdgeirakidq 96 
                 ++++  kal++g++++++ + ++  + +   ++ aq+ e+L k+++e+ lr++ +     ys++sl+ la+++ l+   v +i++k+I ++e++a++dq
  CDO69193.1 673 HIMQASKALQNGEWEKCRDLIQSI-KIWSLMPECAQVKEMLAKRIQEEGLRTYLFtyapHYSTLSLSLLARTFSLPLRSVTSIVSKMIWTEELAASLDQ 770
                 566777888888888888888888.88899999999**************88888******************************************** PP

                 TTTEEEECS CS
         PCI  97 esgivvfkk 105
                  +g vvf++
  CDO69193.1 771 SAGAVVFNR 779
                 *******85 PP

>> Inhibitor_I10  Serine endopeptidase inhibitors
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0029        11       4      35 ..      28      60 ..      24      68 .. 0.67
   2 !   10.5   0.2   0.00015      0.54       3      44 ..      64     106 ..      62     118 .. 0.79
   3 ?    0.4   0.1      0.23   8.1e+02       5      25 ..     142     162 ..     140     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0029
  Inhibitor_I10  4 naekdlnanA.vPFFARfLegQeceelsdeeve 35
                    ++ ++ a A +P   RfL +Q     sdee+ 
     CDO69193.1 28 DEAPKPAAPAgKPVMSRFLKTQGESSSSDEESS 60
                   444455554449**********95666677654 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00015
  Inhibitor_I10   3 dnaekdlnanAvPFFARfLegQeceelsdeeveev.sggkskr 44 
                    ++++ d   +A+P   RfL g  ++e sde+v++v +++k kr
     CDO69193.1  64 ESEASDDEEQAKPRAGRFLHGASSDEESDEDVKRVvKSAKDKR 106
                    677778889***********************99724554444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
  Inhibitor_I10   5 aekdlnanAvPFFARfLegQe 25 
                    ++++++    PFF R L++ e
     CDO69193.1 142 RQQNVSEPVPPFFIRTLANLE 162
                    56777677779****998766 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.0   0.00066       2.4      13      81 ..     156     224 ..     144     253 .. 0.82
   2 ?    2.1   0.0     0.072   2.6e+02      61     123 ..     391     461 ..     289     467 .. 0.75
   3 ?    1.4   0.0      0.13   4.5e+02      70      97 ..     672     699 ..     634     720 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00066
     DUF2408  13 ekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrde.egkFkseegkevvekgqavln 81 
                   L ++  sL + +ak k++++k +++ +  l+++k+++kki ++ ++  ++F+++++   + + q++++
  CDO69193.1 156 RTLANLETSLNAAVAKDKESKKKMNASNARALTAMKQKVKKISKEYEQeLKRFQEDPE-AFEREYQQIVA 224
                 568899999***********99999999***************987773567855554.77777777765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.072
     DUF2408  61 egkFkseegkevvekgqavlngLlddcfdlvedlkaqd.........geekkvasslqpiYdrLleikttLe 123
                 +++F+++ + +++++g + ++ L d+    ++  +aq            ++ +  +l++iY++  ++ + Le
  CDO69193.1 391 DDEFTKSLQ-HIDPHGTEYVDRLKDEKVLYLTICRAQAlyektkqedPLARVIMRRLEHIYSKPDAVVQALE 461
                 578977665.79999999999999999999999999988866655543345666777777776666666666 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.13
     DUF2408  70 kevvekgqavlngLlddcfdlvedlkaq 97 
                 +++ ++++a+ ng  ++c dl++ +k  
  CDO69193.1 672 DHIMQASKALQNGEWEKCRDLIQSIKIW 699
                 347889999***************9975 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.7   3.3e-05      0.12      47     183 ..      71     221 ..      32     295 .. 0.72
   2 ?   -2.3   0.1      0.83     3e+03      90     140 ..     549     605 ..     521     682 .. 0.66
   3 ?   -0.3   0.4      0.21   7.6e+02     125     180 ..     784     839 ..     733     859 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
      AAA_11  47 seeeksakpriLvCapSNaAvDellerllrglldsegekykp......................kivRvgneeeriseavksvsleekvekrlekee.. 121
                 +e++k +  r L  a+S+   De ++r++++ +d++ e+ +                       k++R+++ ++++se v ++++++  + + + +   
  CDO69193.1  71 EEQAKPRAGRFLHGASSDEESDEDVKRVVKSAKDKRLEEMEAtgkvmdnalkindwvaisnefdKLIRMVQRQQNVSEPVPPFFIRTLANLETSLNAav 169
                 5677888899********************777777777777999999999999999999999999999999999999999999888777777665433 PP

      AAA_11 122 .................kaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskelee 183
                                   +                           + k++ +k ++++eqe++  ++  + +++e+++
  CDO69193.1 170 akdkeskkkmnasnaraLT---------------------------AMKQKVKKISKEYEQELKRFQEDPEAFEREYQQ 221
                 3333333333333333322...........................233444444444444444444444444444443 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.83
      AAA_11  90 ivRvgnee......eriseavksvsleekvekrlekeekaqlakeiskeleklakel 140
                 +v +g ++      ++++ ++++++  ++v++ l++  ++q  + ++ e+ek +++ 
  CDO69193.1 549 VVQLGLSAfrcgliKEAQATLQDIFATQRVKELLAQGVHQQRYQVLTPEQEKAERQR 605
                 444444444444444667777777777777777777665555555555555444443 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.21
      AAA_11 125 lakeiskeleklakelrafeeeeek...............eklkkskekskskleqerrklkkerkelske 180
                  +++++++l+++ ++l +++e++ +               +               + +k  ++ +e +++
  CDO69193.1 784 RTQQLAQTLAEKVNALVEQNEKALDqklgistswneradgA---------------KGDKRGEQTQERNRR 839
                 22222222222222222222222222333444453332220...............222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1881  (0.104914); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 5570.29
//
Query:       CDO69194.1  [L=409]
Description: hypothetical protein BN946_scf185042.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   30.5   0.2       0.02   14.6   1.6    3.5  2  Hexapep    Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
      0.026   12.7   0.0      0.036   12.2   0.0    1.2  1  DUF4954    Domain of unknown function (DUF4954)
      0.084   12.6   2.1       0.16   11.8   1.3    1.9  1  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0018        11       6      35 ..     280     309 ..     279     310 .. 0.83
   2 !   14.6   1.6   3.4e-06      0.02       2      30 ..     311     355 ..     310     361 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0018
                 TTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   6 snvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 + +lI+  a+i ++  IG+ +++++ + i+
  CDO69194.1 280 NRSLIDQKAQISSDSMIGRSTRVEERASIK 309
                 567899999999999999999999888775 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.4e-06
                 EEEETTEEE-T.................TEEEETTEEE-TTEEEET CS
     Hexapep   2 tvIGsnvlIgp.................faviggnVkIGdnvkIga 30 
                 +vIG++++Ig+                 +a++ +++++G ++kIga
  CDO69194.1 311 SVIGKHCVIGKmakvvgcilldhcvvadGAKL-DGCILGTYTKIGA 355
                 68999999999999995555555555556666.6666666666666 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-06     0.036     225     277 ..     290     342 ..     273     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-06
     DUF4954 225 iledfiissGskikdgavisrcfvGqavklkkqfsaedsllfaNcqgengEav 277
                 i +d++i   +++++ a i+r+++G+ + ++k +++  ++l + c +  g  +
  CDO69194.1 290 ISSDSMIGRSTRVEERASIKRSVIGKHCVIGKMAKVVGCILLDHCVVADGAKL 342
                 568999***************************************99887654 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   2.6e-05      0.16       4      29 ..     313     339 ..     312     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                 E-TT-EE-TT-EE.SEEE-TT-EE-TT CS
   Hexapep_2   4 IGdnCliGanagi.GvslGdncvvgaG 29 
                 IG+ C+iG+ a + G +l d cvv+ G
  CDO69194.1 313 IGKHCVIGKMAKVvGCILLDHCVVADG 339
                 ************55**********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3083.14
//
Query:       CDO69195.1  [L=916]
Description: hypothetical protein BN946_scf185042.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-68  229.2   0.0    7.7e-68  228.7   0.0    1.2  1  Pkinase         Protein kinase domain
    6.8e-50  169.8   0.0    9.6e-50  169.3   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
      1e-05   25.0   0.0    2.2e-05   23.9   0.0    1.5  2  Kinase-like     Kinase-like
    8.9e-05   21.4   0.0    0.00017   20.5   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
     0.0007   19.6   0.0       0.24   11.3   0.0    2.5  2  APH             Phosphotransferase enzyme family
     0.0081   15.1   0.0      0.033   13.2   0.0    1.9  2  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.027   14.0   0.0      0.049   13.2   0.0    1.3  1  RIO1            RIO1 family
       0.15   11.4   0.0       0.24   10.7   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   0.0   3.4e-71   7.7e-68       1     264 []      10     266 ..      10     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 3.4e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle..rkgsls 96 
                 y++le++G+G++G+V k+++ +tg+ vA+K+i+ + ++++   +++rE+++l +l+  pn+ ++y++f +  ++++v+ey++gg++ +l++  ++g+++
  CDO69195.1  10 YQRLETIGKGAYGSVHKGRDLRTGEVVALKIINLDTEDDDVG-DIQREVALLTQLRdAPNVTKYYGCFMDGPRVWIVMEYAQGGSVRTLMKacKDGIVE 107
                 7899*******************************9999875.9*****************************************999999988999** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgk 194
                 e+ +  i++++l+gl+ylH+ +iiHrDlK +NiLi   g+++i+DFG+++ l + s+  ++ vgt++++APEv +++ y++k+D+WslG+++ye++ g+
  CDO69195.1 108 EKYVAVITREVLNGLSYLHKSSIIHRDLKAANILITAAGKVMICDFGVSALLVTASSkRNTLVGTPHWMAPEVAHASAYDTKADIWSLGIMIYEMIKGS 206
                 *************************************************9988777669**************************************** PP

                 -STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 195 ppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  p s         +++dq+ k+++++  +k     +s+ s+e++d++  +l++ p++Rl+a+el++ +++
  CDO69195.1 207 APNS---------HIVDQH-KLIQLIPRMKPPRLAESDGSKELRDFVAACLRESPSDRLSADELMKTKWI 266
                 ***9.........567773.3444443445555566677*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3   0.0   4.3e-53   9.6e-50       4     257 ..      13     262 ..      10     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 4.3e-53
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                   +++G+Ga+G+V++g+      ++ + Va+K+++ ++++++  ++ +e++++++l + pn+ k++g+ +++ +++iv+ey++gG++++ +++ ++  +
   CDO69195.1  13 LETIGKGAYGSVHKGRDL----RTGEVVALKIINLDTEDDDVGDIQREVALLTQLrDAPNVTKYYGCFMDGPRVWIVMEYAQGGSVRTLMKACKDGIV 106
                  689************988....88999******************************************************************88888 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEi 198
                  + k +  ++ +v +G++yL++ +++Hrdl a N+L++   +v i+DfG++  +      +k+++     +WmapE+ +++ + +k+D+Ws G++++E+
   CDO69195.1 107 EEKYVAVITREVLNGLSYLHKSSIIHRDLKAANILITAAGKVMICDFGVSALL--VTASSKRNTLVGTPHWMAPEVAHASAYDTKADIWSLGIMIYEM 202
                  999999999******************************************99..55556777788899***************************** PP

                  HTTSSGTTTTS.HHHHHHHHHHTTEE.S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 199 ftlgespypgl.kneevleklkegkr.lekpekcpeelyelmkkcweedpeeRptfselve 257
                  ++ g+ p +++ +++++++ + + k    + ++ ++el +++  c++e+p++R +  el++
   CDO69195.1 203 IK-GSAPNSHIvDQHKLIQLIPRMKPpRLAESDGSKELRDFVAACLRESPSDRLSADELMK 262
                  *9.889988887889999999554441345556899******************9998875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.9   6.4e+03      15      49 ..      11      45 ..       7      64 .. 0.78
   2 !   23.9   0.0     1e-08   2.2e-05     147     255 ..     112     214 ..      97     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.9
  Kinase-like 15 vrgellkkgdrsvvfevkdqetgeplavkvfllps 49
                  r e ++kg  + v + +d  tge +a+k+  l  
   CDO69195.1 11 QRLETIGKGAYGSVHKGRDLRTGEVVALKIINLDT 45
                 56788999999999999999999999999876654 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1e-08
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft..a.Lvragtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlvi 240
                  +++T ++++   +L++  ++h ++++ n+l    g++m+ +f+  a Lv+a  k     v    +  pE+  +           +  k d W lG+ i
   CDO69195.1 112 AVITREVLNGLSYLHKSSIIHRDLKAANILITAAGKVMICDFGvsAlLVTASSKRN-TLVGtPHWMAPEVAHA---------SAYDTKADIWSLGIMI 199
                  57899999999*****************************9863343666665555.3333233455666544.........4566699********* PP

  Kinase-like 241 yriwclklPltlate 255
                  y +    +P+  + +
   CDO69195.1 200 YEMIKGSAPNSHIVD 214
                  ****99999988765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.5e-08   0.00017     313     389 ..     116     184 ..     107     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.5e-08
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkge 389
                     r++++g+  L+ k  i+HrD  + Nilit     +  k ++ D+ +   l +  ++s++++ +GT+ +ma ev +++
      CDO69195.1 116 REVLNGLSYLH-KSSIIHRDLKAANILIT-----AAGKVMICDFGVSALLVT--ASSKRNTLVGTPHWMAPEVAHAS 184
                     6789999****.*****************.....789999*99999988885..6667789*********9997754 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0053        12      24      84 ..      37      96 ..      24     108 .. 0.80
   2 !   11.3   0.0   0.00011      0.24     163     194 ..     125     154 ..      97     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0053
                EEEEE-TT...S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH 24 vlrrnppa...raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84
                +l++++     +   +i+revall++L++a + v + +       + ++++ ++ey  g s+++
  CDO69195.1 37 ALKIINLDtedDDVGDIQREVALLTQLRDA-PNVTKYYG---CFMDGPRVWIVMEYAQGGSVRT 96
                4777666666678899**************.55888888...6788888999999999888766 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfe 194
                   + +++H+Dl+  N+l+++++  +  + Df+
  CDO69195.1 125 LHKSSIIHRDLKAANILITAAGKVM--ICDFG 154
                 45689**************665555..77886 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.81   1.8e+03     109     138 ..      17      48 ..       4      62 .. 0.74
   2 !   13.2   0.0   1.5e-05     0.033     230     257 ..     132     159 ..     118     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.81
  Haspin_kinase 109 seklssevyqtke..kdkevvlKviplevled 138
                    +++ ++ v++ ++  + + v+lK+i l++ +d
     CDO69195.1  17 GKGAYGSVHKGRDlrTGEVVALKIINLDTEDD 48 
                    777788888888776778899******88765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.5e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle 257
                    HRdL+  niL+ ++++v ++d+ +s l 
     CDO69195.1 132 HRDLKAANILITAAGKVMICDFGVSALL 159
                    **********************998765 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05     0.049      82     150 ..      83     154 ..      53     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 EEEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHH....HHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  82 vlvmefigedgvaapklkdveeeeeaeelyeevle....emrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                  +vme+ +  g  + +l ++ ++   ee y  v+     +    +++  ++H DL   N+l++   kv+i D++
  CDO69195.1  83 WIVMEYAQ--GGSVRTLMKACKDGIVEEKYVAVITrevlNGLSYLHKSSIIHRDLKAANILITAAgKVMICDFG 154
                 699**999..7777777766656666666666665433334456779****************99899999986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.24     117     171 ..     108     158 ..      53     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
         Kdo 117 eelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 e+  + + ++v    + lh+  + H+dl a nil+ +++    ++++ D+  ++l
  CDO69195.1 108 EKYVAVITREVLNGLSYLHKSSIIHRDLKAANILITAAG----KVMICDFGVSAL 158
                 55555566666677788*********************9....999999976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 5715.22
//
Query:       CDO69196.1  [L=255]
Description: hypothetical protein BN946_scf185042.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-63  210.8   0.5    3.3e-27   95.3   0.0    3.1  3  APS_kinase  Adenylylsulphate kinase
    4.8e-05   23.6   0.0    0.00012   22.3   0.0    1.5  1  AAA_33      AAA domain
     0.0022   18.5   0.0     0.0035   17.9   0.0    1.6  1  AAA_18      AAA domain
  ------ inclusion threshold ------
      0.035   13.9   0.0      0.057   13.2   0.0    1.3  1  AAA_29      P-loop containing region of AAA domain
      0.037   13.5   0.0      0.055   12.9   0.0    1.2  1  KTI12       Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   1.1e-29   3.9e-26       1      67 [.      24      90 ..      24      95 .. 0.97
   2 !   95.3   0.0   9.3e-31   3.3e-27      63     134 ..     121     193 ..     116     212 .. 0.92
   3 !   20.6   0.0   9.1e-08   0.00032     133     157 ..     213     237 ..     210     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.1e-29
                S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHH CS
  APS_kinase  1 rgvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaeva 67
                +g+++w+tGls+sGKstia+ale++L +  + +y+LdGdn+R+gLnkdLgf+e+ R+enirr++ev 
  CDO69196.1 24 KGITIWFTGLSASGKSTIACALEQHLLHLHRFTYRLDGDNIRFGLNKDLGFDEKSRNENIRRIGEVR 90
                689**************************************************************95 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 9.3e-31
                 HHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCH.TEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSH CS
  APS_kinase  63 vaevaklladaglivlvafisPyreeReaarelleea.lkfievfvdtplevceerDpkglYkkareGeikef 134
                  a+v+kl+ad++ i+l+afisPyr++R  arel+e++ l fievfvd+pl+v e+rDpkglYkkar+Geik+ 
  CDO69196.1 121 RAQVSKLFADSCCITLTAFISPYRADRAVARELHEKSgLAFIEVFVDAPLHVVEQRDPKGLYKKARAGEIKGT 193
                 589********************************9889*******************************986 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 9.1e-08
                 SHTTTSS-----SS-SEEEETTTS- CS
  APS_kinase 133 eftGidspYeaPenpelvvdtdkes 157
                 +ftGi++pYeaPe+pe++++td+ +
  CDO69196.1 213 DFTGISAPYEAPESPEIHIRTDECD 237
                 6*******************99865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.3e-08   0.00012       2     115 ..      28     177 ..      28     188 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.3e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg....tdqqskt..........................dytr.vldrlyqilnelar 64 
                 +++ Gl++sGKst a  l ++l      +++l+ d++r+ l +    + ++s +                           ++r +  +ly+++++ + 
  CDO69196.1  28 IWFTGLSASGKSTIACALEQHLLhlhrfTYRLDGDNIRFGLNKdlgfD-EKSRNenirrigevrtvpllslheraadnrfPSARsCGLSLYGRTRAQV- 124
                 6799**********98887776677799********887777765532.2222245667777777777777766665554333325556899998888. PP

      AAA_33  65 kalsagrnvildatnls..rrerarflklarrlgvpvrivvvetdeetlkeRl 115
                 ++l a   +i+   ++s  r++ra  ++l ++ g ++  v+v+++  + ++R 
  CDO69196.1 125 SKLFADSCCITLTAFISpyRADRAVARELHEKSGLAFIEVFVDAPLHVVEQRD 177
                 578888889999999995559999999999999*99999******99999995 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.9e-07    0.0035       1      51 [.      28      85 ..      28     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.9e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf........gvnlrdvakenglllevdpealdeskr 51
                I+ tG +++GK+t+a +L+++l ++        g+n+r+ + ++   +e   +  ++ +r
  CDO69196.1 28 IWFTGLSASGKSTIACALEQHLlHLhrftyrldGDNIRFGLNKDLGFDEKSRN--ENIRR 85
                899******************86778889888888888877765544444444..44444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.057      19      43 ..      21      46 ..      12      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
      AAA_29 19 idlkg.atlltGpsGsGKSTllDAiq 43
                +++kg ++ +tG s sGKST+  A+ 
  CDO69196.1 21 LNQKGiTIWFTGLSASGKSTIACALE 46
                566788889***********987765 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.055       4      57 ..      28      84 ..      27      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH...TTSS.S--GGGHHHHH CS
       KTI12  4 vvltGlPssGKstrakeLakaleeekrsvvviddeslg..iekds.ykdsakekalR 57
                + +tGl +sGKst+a  L+++l + +r  + +d + ++  ++kd  ++++++ +++R
  CDO69196.1 28 IWFTGLSASGKSTIACALEQHLLHLHRFTYRLDGDNIRfgLNKDLgFDEKSRNENIR 84
                569*******************99888888888888774333333666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1725.68
//
Query:       CDO69197.1  [L=330]
Description: hypothetical protein BN946_scf185042.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-08   32.6   0.1      0.048   13.8   0.0    3.5  4  Peptidase_C15  Pyroglutamyl peptidase


Domain annotation for each model (and alignments):
>> Peptidase_C15  Pyroglutamyl peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   9.3e-06      0.17       2      30 ..      17      49 ..      16      72 .. 0.85
   2 ?   -2.0   0.0      0.18   3.3e+03      33      52 ..      82     101 ..      54     103 .. 0.80
   3 !    2.2   0.0    0.0098   1.8e+02      60      96 ..     128     162 ..     125     178 .. 0.82
   4 !   13.8   0.0   2.7e-06     0.048     113     159 ..     232     279 ..     227     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-06
                   EEEEEEE.....---TT-S--HHHHHHHHHTT-E CS
  Peptidase_C15  2 kvLvtGf.....dPfgkekinPaleavkeLdgae 30
                   +vL+tGf     +Pfgk k nP++ avk L+  +
     CDO69197.1 17 RVLITGFghlppQPFGKYKENPSWLAVKPLHN-T 49
                   79*****555555****************984.3 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.18
                    TEEEEEEEE-SSTTHHHHHH CS
  Peptidase_C15  33 eativkrevPtvfkksadvl 52 
                    + +i+++evP++++ + +++
     CDO69197.1  82 QIHITTLEVPVSYQAVLNIV 101
                    56789999999999998876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.0098
                    --SEEEEEEE-TT--SEEEE-EEES-BE-SS--TTS- CS
  Peptidase_C15  60 kpdivlaiGqagGrsaitvervainldDaripDnegk 96 
                     +d + ++G a Gr  + +er+    +  r++D++g+
     CDO69197.1 128 GYDFIFHVGVA-GRGPLRIERIGH-KNGYRMKDADGE 162
                    589999**976.8********986.456799999886 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 2.7e-06
                    --S-HHHHHHHHHHTT--EEE.ES---SSHHHHHHHHHHHHHHHHS-- CS
  Peptidase_C15 113 stlPvkamvkalkeaGvPaav.sntaGtfvCnhllYqvlylldkklpe 159
                    +++ v +++  lke+G+     s  aG ++C++++Y +l  + +++ +
     CDO69197.1 232 TEIDVPKLIVHLKENGIDQVYsSMDAGHYLCDFMFYCSLAESRRHVVP 279
                    567788999********87651678************99988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2385.94
//
Query:       CDO69198.1  [L=617]
Description: hypothetical protein BN946_scf185042.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-54  182.1   0.0    1.3e-53  181.3   0.0    1.4  1  MgsA_C           MgsA AAA+ ATPase C terminal
    1.3e-15   57.4   0.0    3.7e-15   56.0   0.0    1.8  1  AAA_assoc_2      AAA C-terminal domain
    2.2e-15   57.2   0.0    6.7e-15   55.7   0.0    1.8  1  AAA              ATPase family associated with various cellul
    2.3e-15   56.7   0.0      4e-15   55.9   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.7e-08   33.5   0.1    3.7e-07   30.2   0.1    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
    5.9e-08   33.3   2.4    0.00038   20.9   0.1    3.1  3  AAA_16           AAA ATPase domain
    1.5e-05   24.7   0.0     0.0018   18.0   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
    1.7e-05   24.3   0.1      0.026   13.9   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.3e-05   24.2   0.2     0.0017   18.7   0.1    2.6  2  AAA_22           AAA domain
    4.4e-05   24.0   0.0    9.7e-05   22.9   0.0    1.6  1  AAA_18           AAA domain
    5.7e-05   23.2   0.0    0.00015   21.8   0.0    1.7  2  AAA_14           AAA domain
    0.00015   22.1   0.0    0.00068   19.9   0.0    2.1  2  AAA_28           AAA domain
     0.0013   18.9   0.0     0.0029   17.8   0.0    1.5  1  AAA_33           AAA domain
     0.0032   17.6   0.0     0.0064   16.6   0.0    1.5  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0035   17.7   0.0      0.011   16.1   0.0    1.9  1  RNA_helicase     RNA helicase
     0.0048   16.8   0.1        1.1    9.1   0.0    2.3  2  ATPase_2         ATPase domain predominantly from Archaea
      0.007   16.3   0.0      0.016   15.1   0.0    1.6  1  Rad17            Rad17 P-loop domain
  ------ inclusion threshold ------
      0.012   15.6   0.0        1.6    8.7   0.0    2.4  2  ResIII           Type III restriction enzyme, res subunit
      0.016   15.3   0.0      0.048   13.8   0.0    1.7  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.021   13.9   0.0      0.031   13.4   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1
      0.021   15.3   0.0      0.066   13.7   0.0    1.8  1  ABC_tran         ABC transporter
      0.025   13.8   0.0       0.96    8.6   0.0    2.2  2  NB-ARC           NB-ARC domain
      0.043   13.5   0.0      0.066   12.9   0.0    1.3  1  AAA_24           AAA domain
      0.061   13.1   0.0       0.16   11.7   0.0    1.7  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.074   12.8   0.0       0.15   11.8   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
        0.1   12.1   0.0       0.24   10.9   0.0    1.5  1  AAA_25           AAA domain
       0.11   12.7   0.0       0.23   11.6   0.0    1.5  1  SKI              Shikimate kinase
       0.14   11.9   0.0        4.5    7.0   0.0    2.2  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
       0.15   11.9   0.0       0.31   10.9   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
        2.2    8.9  10.2          4    8.1   2.2    2.2  2  Pex14_N          Peroxisomal membrane anchor protein (Pex14p)


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.0   2.2e-56   1.3e-53       1     158 [.     427     583 ..     427     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 2.2e-56
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH------ CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekksl 99 
                 GS+  AAly+larml+aGedp +iaRR+v++AseDiGlAd++al+lav++++a++ iG+pE+ri+La++v yl+ apKS+++y+++++a e++k ++s 
  CDO69198.1 427 GSQGSAALYWLARMLSAGEDPLYIARRMVVCASEDIGLADNHALPLAVTTYQACQIIGMPECRINLAHLVSYLSEAPKSTRSYEGYNRAEEAAKLDPSI 525
                 89999********************************************************************************************** PP

                 ---GGGST...........T-T---GGG--SS------S-CCG--..--------HHHH CS
      MgsA_C 100 evPlhLrnaptklakklgygkgYkyphdypegvvkqqylpdelkkkkfYepterglekk 158
                 +vPl +rnapt l+k+lgy +gYky+ +y  + v+++ylp +++  +f + +  + +k 
  CDO69198.1 526 PVPLMVRNAPTGLMKDLGYARGYKYNPEY-AHPVTNDYLPIQFRGDEFLRKEGDKRDKV 583
                 *****************************.899**********9999999877776655 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   6.3e-18   3.7e-15       7      81 .]     357     426 ..     354     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 6.3e-18
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2   7 leddalealaeladGDaRkaLnlLElaaeaaeakegkieitledleealqrka.lryDkagdehYdliSAlhKSiR 81 
                  l++++l+++++l+ GDaR+aL lLEl+++a       i  ++  l  al r++ + yD++gd+ Yd+iSAlhKS+R
   CDO69198.1 357 LTPKVLSTIVSLSTGDARTALSLLELVLSAPP-----IS-EEGALLGALRRSVsTAYDRSGDARYDMISALHKSVR 426
                  7899***********************98875.....23.3333444554444378*******************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   1.1e-17   6.7e-15       1     127 [.     148     256 ..     148     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.1e-17
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvnqLlteldg 95 
                 ++++GppG+GKT+la+ +ak +++ f e+s+++          +++r++++eak+      + ++lf+DE+++++k++           ++ +l+++++
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAVFKELSATDSG-------IADVRAVVEEAKNLLaltgRRTVLFLDEVHRFNKAQ-----------QDIFLPFIEQ 228
                 689*****************************999.......9999****9999988999766***************...........*********9 PP

                 TTTSSSTEEEEEEESS..GGGSTHHHHSTTSSEE CS
         AAA  96 vkkkeskvivigatnr..pdkldpallrgRfdrk 127
                          +igat++    +l++all +R+ + 
  CDO69198.1 229 GYI-----QLIGATTEnpSFRLTSALL-SRCRVF 256
                 866.....6999999988899******.999875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   6.7e-18     4e-15       1     116 [.     115     234 ..     115     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 6.7e-18
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgP..vleka....gdlaalltnleekdvlfidei 93 
                 lrP+slee++gq +++ + +++++   +r  a   +++ GpPG Gkttla+++ak  ++ +k  s+    +        +   ll+   ++ vlf+de+
  CDO69198.1 115 LRPQSLEEFVGQPHLTGSNSLLMRQL-ER-GATGSIIFWGPPGCGKTTLARLLAKRTNAVFKELSATdsGIADVravvEEAKNLLALTGRRTVLFLDEV 211
                 8*****************99998754.44.46789**********************99998766541122222001123334555556899******* PP

      RuvB_N  94 hrlsraveevlysamedfrldiv 116
                 hr+++a ++++ + +e  +++++
  CDO69198.1 212 HRFNKAQQDIFLPFIEQGYIQLI 234
                 ****************9999875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   6.3e-10   3.7e-07       2     102 ..     148     239 ..     147     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 6.3e-10
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                 ++  GppG+gK++la+ la+++n+ + +   t+    +d++  +e        + + l     +  +l+lDEv+r +++ ++++l+ +e+ +++l   +
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAVFKELSATD-SGIADVRAVVE--------EAKNLLALTGRRTVLFLDEVHRFNKAQQDIFLPFIEQGYIQLIGAT 237
                 6889********************999988876.56666666666........5566664445999**************************9987666 PP

                 SE CS
       AAA_5 101 el 102
                 ++
  CDO69198.1 238 TE 239
                 65 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.3e-07   0.00038      16      47 ..     137     168 ..     133     181 .. 0.84
   2 !   10.9   0.1   0.00077      0.46     117     156 ..     184     224 ..     171     229 .. 0.72
   3 ?   -1.0   0.0       3.3     2e+03      71      99 ..     269     294 ..     243     381 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.3e-07
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellra 47 
                 ++++ +g ++++++ G++G+GK++l+r l+++
  CDO69198.1 137 MRQLERGATGSIIFWGPPGCGKTTLARLLAKR 168
                 5678899999*******************974 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00077
      AAA_16 117 srllellkrllallsrderplvlvlDdlqwadeaslql.la 156
                  ++++++ ++ +ll+ ++r +vl+lD+++++  a++++ l+
  CDO69198.1 184 ADVRAVVEEAKNLLALTGRRTVLFLDEVHRFNKAQQDIfLP 224
                 55555566666555555777****************99665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.3
      AAA_16  71 alaqalareellrqlldeaesaeleawre 99 
                 ++ qa +r   + q+++++++++++  ++
  CDO69198.1 269 IISQAVER---VSQIESAQTASAAGSQQR 294
                 23333322...222222212211111111 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.049        29      24      50 ..     147     173 ..     133     191 .. 0.79
   2 !   18.0   0.0   3.1e-06    0.0018      94     139 ..     203     247 ..     192     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.049
                      -EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrke 50 
                      s++  G  G+GK++lar++ ++++   
       CDO69198.1 147 SIIFWGPPGCGKTTLARLLAKRTNAVF 173
                      68889*************988766554 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.1e-06
                      TSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEE CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriia 139
                        +lfLDe+++++ + Q  +l ++++g ++ +G+++e + ++r+ +
       CDO69198.1 203 RTVLFLDEVHRFNKAQQDIFLPFIEQGYIQLIGATTENP-SFRLTS 247
                      568******************************998765.455555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.3e-05     0.026      24      51 ..     147     178 ..     130     203 .. 0.68
   2 !    8.1   0.0    0.0026       1.6     107     141 ..     203     237 ..     194     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
  Mg_chelatase  24 nlllvGppGsGKtmlak....rlpsllpplse 51 
                   ++++ GppG+GKt la+    r ++++ +ls 
    CDO69198.1 147 SIIFWGPPGCGKTTLARllakRTNAVFKELSA 178
                   69***********8876111044555555554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0026
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtisrak 141
                   + vLfLDE+  f++   +++   +e+g +++  a+
    CDO69198.1 203 RTVLFLDEVHRFNKAQQDIFLPFIEQGYIQLIGAT 237
                   67*****************9999999999986655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.8e-06    0.0017       5      32 ..     145     172 ..     139     199 .. 0.81
   2 ?    2.8   0.0      0.22   1.3e+02      90     105 ..     201     218 ..     184     234 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.8e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldee 32 
                  g+++ +G++G+GKTtl+r l+++ +++
  CDO69198.1 145 TGSIIFWGPPGCGKTTLARLLAKRTNAV 172
                 6899******************998655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.22
      AAA_22  90 avielliiDEaqhlr..s 105
                 +++ +l +DE+++++  +
  CDO69198.1 201 GRRTVLFLDEVHRFNkaQ 218
                 2257*********96432 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.6e-07   9.7e-05       1      32 [.     148     193 ..     148     239 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.6e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..............gvnlrdva 32 
                 I+  G+pG+GKttla+ L+kr++               ++ + + a
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAvfkelsatdsgiadVRAVVEEA 193
                 8999*****************8445777766666644433333333 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       9.5   5.7e+03      97     107 ..     129     139 ..     125     148 .. 0.74
   2 !   21.8   0.0   2.5e-07   0.00015       5      81 ..     148     219 ..     144     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.5
      AAA_14  97 vtGSnskllsk 107
                 +tGSns+l+ +
  CDO69198.1 129 LTGSNSLLMRQ 139
                 79***988743 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2.5e-07
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilek..lkeekktylflDEiqevpewek 81 
                 ++  G+  +GKTtl++ l+k+       + +++  d      ad + + e+ +++  l++ ++t+lflDE+++ +++++
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTN---AVFKELSATDSGI---ADVRAVVEEAKNLlaLTG-RRTVLFLDEVHRFNKAQQ 219
                 5667999********99997766...5555555555444...444445566666543455.99**********999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-06   0.00068       2      30 ..     148     176 ..     147     210 .. 0.92
   2 ?   -1.3   0.0       3.9   2.3e+03      13      39 ..     536     563 ..     536     591 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-06
      AAA_28   2 ivitGgestGKTtlleaLaargypvvpEa 30 
                 i++ G++++GKTtl++ La+r   v++E 
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAVFKEL 176
                 899******************99998886 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.9
      AAA_28  13 TtlleaLa.argypvvpEaareileekl 39 
                 T l++ L  argy++ pE+a  ++++ l
  CDO69198.1 536 TGLMKDLGyARGYKYNPEYAHPVTNDYL 563
                 55788888788********999888755 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.8e-06    0.0029       2      26 ..     148     172 ..     148     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.8e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgav 26 
                 +++ G+pG+GK+tla+ l+k++ av
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAV 172
                 6899***************998865 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-05    0.0064      25     108 ..     149     238 ..     136     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-05
                      EEEEETT--HHHHHHCC--TTS-E.E--SSTTHHHH-HHHHHHHT........TTSEEEEEE-TT--HHHHHHHHHHHHHHTTTT-EEEEEEE CS
  Sigma54_activ_2  25 fltGekGsgkelvArlLhknsgpw.leifvverlaklpldlleqa........kggtLylkdiadlskaeqkeLlellakaeksslrlVstss 108
                         G++G+gk++ ArlL+k    +  e+   +++++    ++e+a        +  +L+l +++ ++ka+q   l  ++++    ++l+ ++ 
       CDO69198.1 149 IFWGPPGCGKTTLARLLAKRTNAVfKELSATDSGIADVRAVVEEAknllaltgRRTVLFLDEVHRFNKAQQDIFLPFIEQG---YIQLIGATT 238
                      567**************987655414555555555555555555444444446889***************9888888775...555555544 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.9e-05     0.011       1      26 [.     148     173 ..     148     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   i+++Gp+g+GK+tla+ Lak+    +
    CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAVF 173
                   789****************9987665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0018       1.1      14      44 ..     139     169 ..     134     175 .. 0.80
   2 ?    6.1   0.0     0.016       9.3      93     131 ..     175     215 ..     164     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0018
    ATPase_2  14 ilerepneiyfiYGpegsGKtaLlkeiienl 44 
                  ler+    +  +Gp g+GKt+L + ++++ 
  CDO69198.1 139 QLERGATGSIIFWGPPGCGKTTLARLLAKRT 169
                 5677777777889**********99887765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.016
    ATPase_2  93 eilk..eksklvfkaielllekikkkgkkiiiiiDelqkli 131
                 e++   + +++v + +e++++ +  +g++ ++++De+ +  
  CDO69198.1 175 ELSAtdSGIADVRAVVEEAKNLLALTGRRTVLFLDEVHRFN 215
                 3333457899***************************9877 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.7e-05     0.016      36      75 ..     136     175 ..     113     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-05
       Rad17  36 kadvLesrkkriLLisGPsGCgkstvvkvLskelgiklre 75 
                     Le+     ++  GP+GCgk+t  + L+k     ++e
  CDO69198.1 136 LMRQLERGATGSIIFWGPPGCGKTTLARLLAKRTNAVFKE 175
                 5556777666678889****************98776666 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.05        30      26      48 ..     147     169 ..     118     177 .. 0.81
   2 ?    8.7   0.0    0.0027       1.6     122     151 ..     192     219 ..     168     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.05
                 EEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  26 rglikmaTGtGKTlvaaklierl 48 
                  ++++ + G+GKT +a  l++r 
  CDO69198.1 147 SIIFWGPPGCGKTTLARLLAKRT 169
                 678***********998888776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0027
                 .....HHHTTT-SEEEEETGGGTTS.TTTH CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakkswr 151
                 e ++  +l +r  v++ DE+Hr++++   +
  CDO69198.1 192 EAKNLLALTGRRTVLFLDEVHRFNKA--QQ 219
                 5677788899999**********994..33 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     8e-05     0.048       4     108 ..     146     231 ..     144     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8e-05
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqi 102
                 +si++ gp g+Gkt la+ la+  ++     +  + a++     +v+ +v+    a++       + +++lDE+ +  +             q+++L+ 
  CDO69198.1 146 GSIIFWGPPGCGKTTLARLLAKRTNA----VFKELSATDSGI-ADVRAVVE---EAKNLLALTGRRTVLFLDEVHRFNK-----------AQQDIFLPF 225
                 79********************9994....444444544444.33455554...4667777778889999999999999...........566777777 PP

                 HH--EE CS
       AAA_2 103 leggtl 108
                 +e+g +
  CDO69198.1 226 IEQGYI 231
                 777765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.2e-05     0.031      95     138 ..     126     169 ..      61     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.2e-05
   Parvo_NS1  95 npvevgqvllawlskqlgkrntvwfyGpantGktnlaeaIakav 138
                 +p  +g+ +l + + + g  + + f+Gp+ +Gkt la+ +ak +
  CDO69198.1 126 QPHLTGSNSLLMRQLERGATGSIIFWGPPGCGKTTLARLLAKRT 169
                 7889999999999999999*********************9866 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   0.00011     0.066      14      36 ..     148     170 ..     139     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00011
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 + + G+ G+GK+tL++lla+ ++
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTN 170
                 5578**************99876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0016      0.96      19      43 ..     146     168 ..     133     176 .. 0.74
   2 ?    3.5   0.0     0.057        34      71     170 ..     171     272 ..     166     289 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0016
                 CSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  19 qslvvalvGmgGvGKttlakqilnk 43 
                 +   + + G +G+GKttla+   + 
  CDO69198.1 146 G--SIIFWGPPGCGKTTLARLLAKR 168
                 4..57789***********876665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.057
                 XXHHHHHCCCTTSSSS-STTSHHHHHHHHCCCTTEEEEEEEE-SHHH.H.....HHHHCHTTSEEEEEESBCC..CCCCS-S-EEEEEESS--HHHHHH CS
      NB-ARC  71 tilkeLslseddleekeeveslkrklvrlLltkrfllvlDDVweeed.wdkigvvlparenrlrvllTTRdee..vanavsatsekievelLekdeawe 166
                 ++ keLs +++ +     v + +++l  +L ++r++l lD V   ++  + i +++ ++ +   +  TT + +  +++a   ++ ++ +e L++d+   
  CDO69198.1 171 AVFKELSATDSGIADVRAVVEEAKNL-LALTGRRTVLFLDEVHRFNKaQQDIFLPFIEQGYIQLIGATTENPSfrLTSALLSRCRVFVLERLTDDDIRL 268
                 56777777777777777666444444.479999*********998775667888887776666666777654322566666667777777777776655 PP

                 HHHH CS
      NB-ARC 167 llen 170
                 ++++
  CDO69198.1 269 IISQ 272
                 5555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.066       5      33 ..     148     176 ..     145     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtek 33 
                 i+ +Gp+g GKTtla+ l +++  +  e 
  CDO69198.1 148 IIFWGPPGCGKTTLARLLAKRTNAVFKEL 176
                 788**************955554443333 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00026      0.16       5      71 ..     152     211 ..     148     223 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
  Viral_helicase1   5 GvpGcGKStlirkllrtsliltvnrptaelltegkpklpnlsvrtvdsflmalvks.tkgkililDEy 71 
                      G pGcGK+tl r l++        +  ++ l++   +++  +vr v +  ++l++   +  +l+lDE 
       CDO69198.1 152 GPPGCGKTTLARLLAKR------TNAVFKELSA--TDSGIADVRAVVEEAKNLLALtGRRTVLFLDEV 211
                      88*******99999988......2222222222..455555555555555555444355677777876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.15      49     138 ..     147     230 ..     136     251 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
   IstB_IS21  49 nivllGpsGvGKshlaialgv..eavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekry 138
                 +i++ Gp+G GK+ la  l++  +av ++ls +   ++d+ + ++ a+      + l+   + ++l lD++  + +++a++  ++  ie+ y
  CDO69198.1 147 SIIFWGPPGCGKTTLARLLAKrtNAVFKELSATDSGIADVRAVVEEAK------NLLALTGRRTVLFLDEV--HRFNKAQQDIFLPFIEQGY 230
                 699*************99986224666777766666666666665554......45566677778888875..5666666666666666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0004      0.24      32      54 ..     144     166 ..     118     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
      AAA_25  32 agelallaGapgtGKttlaldla 54 
                 a + ++++G+pg+GKttla  la
  CDO69198.1 144 ATGSIIFWGPPGCGKTTLARLLA 166
                 456789************97665 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00038      0.23       1      22 [.     154     175 ..     154     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00038
                 TTSSHHHHHHHHHHHHTSEEEE CS
         SKI   1 mGaGKstvGkllAkklglefiD 22 
                 +G+GK+t+++llAk+ +  f +
  CDO69198.1 154 PGCGKTTLARLLAKRTNAVFKE 175
                 6**************9998876 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.17     1e+02      20      44 ..     146     170 ..     132     182 .. 0.82
   2 ?    7.0   0.0    0.0075       4.5      85     162 ..     183     261 ..     171     262 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.17
  DNA_pol3_delta2  20 hayLfeGdegigkkelalnlakall 44 
                       +++f G+ g+gk +la  lak+ +
       CDO69198.1 146 GSIIFWGPPGCGKTTLARLLAKRTN 170
                      5799*****************9865 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0075
  DNA_pol3_delta2  85 ldqirelieelsr.kpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtn.klLktirSRcqelkfspl 162
                      + ++r + ee+++  +  +++ ++ ++++ + +k+ + ++L ++E    + i   +t++++ +l   + SRc ++ +++l
       CDO69198.1 183 IADVRAVVEEAKNlLALTGRRTVLFLDEVHRFNKAQQDIFLPFIEQGYIQLIGA-TTENPSfRLTSALLSRCRVFVLERL 261
                      5677877776655156679999999********************884443333.344443267899******9998876 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00052      0.31       3      97 ..     149     237 ..     147     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00052
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtveget 97 
                 ++ g PG +kt+l++ lak  ++ fk +  t     +d+   + + e++k++   +G     +l+ de+ r +   q  +l  +e+  + + g+t
  CDO69198.1 149 IFWGPPGCGKTTLARLLAKRTNAVFKELSATDS-GIADV---RAVVEEAKNLLALTGR--RTVLFLDEVHRFNKAQQDIFLPFIEQGYIQLIGAT 237
                 66789**********************998853.33454...3344444444445554..56777788888777777777777776666666555 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.2     0.045        27      31      96 ..      14      86 ..      13     124 .. 0.48
   2 ?    8.1   2.2    0.0067         4      34     111 ..     261     352 ..     260     385 .. 0.37

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.045
     Pex14_N 31 sKGLtqeEIeeaLkraereeeasesavaassaseqa..........qeesasssatpqpqaasqtsqsspspsppa 96
                sK +++++I++ L+++  ++   +++  ++++++qa          + + +sss+ +qp+++ + ++ ++s+++  
  CDO69198.1 14 SKSVNEKDINRHLDNNCADD-VPTPS-TQKGKMSQAsltslftpfgK-AAQSSSSYTQPSSSRSGHTRKRSEAEDL 86
                8999**********943322.22222.22222222245566777642.3333333333333333323223222222 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0067
     Pex14_N  34 LtqeEIeeaLkraereeease....sa..vaassaseqa..............qeesasssatpqpqaasqtsqsspspsppaqqqqqqyrpPivtyp 111
                 Lt+++I   +++a ++ ++ e    ++   ++    +++              +  s++++ +++ +++s++ ++s +p++ ++++q+++++P   +p
  CDO69198.1 261 LTDDDIRLIISQAVERVSQIEsaqtASaaGSQ----QRTadeahviddgasdvA--SSQPDIEEPLSPPSPPFSQSAQPDAGSSTAQTTSQSPSPLFP 352
                 67777766666644444443322112121111....111233456544433221..111111111111111212222222111222222233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 4080.78
//
Query:       CDO69199.1  [L=1464]
Description: hypothetical protein BN946_scf185042.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-19   70.8   3.0    1.3e-19   70.8   3.0    1.9  2  Pre-SET   Pre-SET motif
    4.2e-15   56.5   1.2    4.2e-15   56.5   1.2    2.2  2  SET       SET domain


Domain annotation for each model (and alignments):
>> Pre-SET  Pre-SET motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   3.0   1.5e-23   1.3e-19       7     109 .]    1192    1295 ..    1186    1295 .. 0.89
   2 ?   -4.4   2.7         2   1.8e+04      98     106 ..    1450    1458 ..    1366    1460 .. 0.59

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.5e-23
                  SS-EEEE-SSSS-.-CGCCSEE-SS-EE-TTS--CCC--.....----TTCC-TCCTTSCCCT.....CTTTSB-SSBBTTTSB.HCH-SEEE---T CS
     Pre-SET    7 kvpipvvnevdse.lppakfeYikknilsegvedkeslarseesgCeCkgdClsssskcaCaq.....keeeeeflaYdekgllkeeekkpiyECne 97  
                  + pi +vnevd+e +pp +f Y + ++++egv++++     + +gC+C g C  +s++caC+q     ++++++ + Yd+kg l+ ++++pi+ECn 
  CDO69199.1 1192 APPIYIVNEVDDEpTPPLEFYYSNLMWHGEGVPKPDHD---NLQGCDCVGPCDPTSKTCACVQrqrkyWDGGSSGFIYDRKGKLR-QHEYPIFECNM 1284
                  789**********999****************966533...367****999**999*******9999977888899********7.9********** PP

                  TSSS.-TT-TT- CS
     Pre-SET   98 kCkCssksCknR 109 
                  +C+Cs+ +C nR
  CDO69199.1 1285 NCSCSE-DCMNR 1295
                  ****75.****9 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
                  TSSS.-TT- CS
     Pre-SET   98 kCkCssksC 106 
                  +C+C   +C
  CDO69199.1 1450 TCQCGAVNC 1458
                  455555555 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       1.8   1.6e+04     129     149 ..    1284    1302 ..    1274    1311 .. 0.74
   2 !   56.5   1.2   4.7e-19   4.2e-15       1     168 [.    1314    1427 ..    1314    1428 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.8
                  CEEXSSSSEEEEEEEETTSSE CS
                  xxxxxxxxxxxxxxxxxxxxx RF
         SET  129 lNHsCdpNcnltvqnvlrgpr 149 
                  +N sC+ +c  +v+    g++
  CDO69199.1 1284 MNCSCSEDCMNRVVQ--LGRQ 1302
                  788999999666655..4444 PP

  == domain 2  score: 56.5 bits;  conditional E-value: 4.7e-19
                  SCEEEE.SSXBXTTXEEEEEE.ECCEECHHHHHHHHHHHTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX CS
                  xxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET    1 GrGvfA.tedIpkgeficeyp.eeiiltkdeadkseleaylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlna 95  
                  G+GvfA t++Ip+++ +++y+ e   lt+ e + +++  ylf+l+      ++                                            
  CDO69199.1 1314 GWGVFAgTKKIPANSYVGIYAgE--YLTDHEGEVRGT-TYLFDLD------FW-------------------------------------------- 1357
                  9*****999************55..666666666653.7899989......34............................................ PP

                  XXHCCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEE....TTSSEEEEEESSXBXTTEEEEEXT CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   96 skpeagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnv....lrgprvavfAtrdIkkGeEltidY 168 
                    ++ ++  +   +y+id  a ++gn +    r+lNHsC+pNc +   +     l+ p +a+f++rd+++ eEl+++Y
  CDO69199.1 1358 --FLNEEGmDRKVKYCID--AYHAGNFT----RYLNHSCEPNCVINACYIneanLDKPLLAIFTCRDVEPYEELCFSY 1427
                  ..333333455679****..88******....***********5555555**************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 9867.39
//
Query:       CDO69200.1  [L=242]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-54  183.5   1.0    5.5e-54  183.2   1.0    1.0  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   1.0     3e-58   5.5e-54       1     203 [.      20     230 ..      20     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 3e-58
                     XEEEEEEEETTEEEE--......TSSSB-B---SSS--BGGTTSCHHCCSTTB....--SSBEEEETTSEEEEEEESSC-TT--.S-EEEEEEE- CS
  Glyco_hydro_61   1 Hgvvksltvngkeyegd......pevvrwsrkakdngpvtdvtspdiaCnkag....paaavaevkaGdtvtfewkekwissHk.GpvlvYlakc 84 
                     Hg v s+ +ng+ y+g+         +  +r++ + +p+td t++ +aCn++g    +++ +a+v+aG++vt+ w+ +w+  H+ Gpv+vY+a+c
      CDO69200.1  20 HGGVLSYEINGQWYQGFksyntpVGQISIQREWDTYNPITDPTDSFLACNSNGaslgSGQRSATVPAGSKVTAYWN-QWP--HSiGPVMVYMANC 111
                     9999**********988899877445666777778889************5554554445559*************.6**..888********** PP

                     SSS-GTTT--GGGCEEEEEEEE-EETE-ST...EHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB. CS
  Glyco_hydro_61  85 asgddcktvdgsglkWfKideegldasakk...WatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgtal 176
                       ++ c+t++ s+l+W  id++gl + +     Wa+ +l++n+++++ tiPasl+pGeY+lRhE++A+h+ +   ++QfYp+Caql +tgsg+++
      CDO69200.1 112 --NGACTTATPSSLEW--IDQAGLISGSVAngqWAQGELIANNNSWTSTIPASLKPGEYFLRHELLAIHTPN---QPQFYPECAQLVITGSGSSQ 199
                     ..568*********99..9*****976554899******9999***************************96...8*****************87 PP

                     --....EEGCCSS-TTSTTTSS-TTTTST-S CS
  Glyco_hydro_61 177 pe....vsfpgaykasdpgilvniyeeskst 203
                     p+    v++pgay+ sdpg+ +n+y+e++  
      CDO69200.1 200 PSgsylVKLPGAYSMSDPGVNINVYSETSVY 230
                     845689******************9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1687.56
//
Query:       CDO69201.1  [L=229]
Description: hypothetical protein BN946_scf185042.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-38  132.0  21.4      2e-38  131.3  21.4    1.4  1  DUF1168          Protein of unknown function (DUF1168)
  ------ inclusion threshold ------
       0.37   10.1   9.8       0.54    9.5   9.8    1.2  1  CMS1             U3-containing 90S pre-ribosomal complex subu
        2.8    8.0   7.5        4.4    7.3   7.5    1.3  1  Peptidase_S49_N  Peptidase family S49 N-terminal
        6.9    5.3   6.3          9    5.0   6.3    1.1  1  SAPS             SIT4 phosphatase-associated protein
        8.5    6.4   5.4         10    6.1   5.4    1.3  1  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb


Domain annotation for each model (and alignments):
>> DUF1168  Protein of unknown function (DUF1168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3  21.4   5.5e-42     2e-38       2     118 ..      40     178 ..      39     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 5.5e-42
     DUF1168   2 dkevkipekkkekksrappefvrnVmGSSAGAGSgeFhvYrhlRrrEyeRlklieekskkeeedeefqqkleenkeeaeektaKkrakRekkkqkakkk 100
                  k++ ip ++kek++r+p+e+++nV+GSSAGAGSgeFhvY+++RrrEyeRlkl+ee+++ke+ ++ef+++++e++e+a +ktaK+rakR+kkk++ak k
  CDO69201.1  40 AKPAYIPPPPKEKSIRPPREMMKNVQGSSAGAGSGEFHVYKASRRREYERLKLMEEQAQKEAIEAEFERRKREREEQAAAKTAKNRAKRQKKKERAKGK 138
                 6999*****************************************************************************************888888 PP

     DUF1168 101 kkakkkkkkekekeeks......................e 118
                 ++++k+++ + + +e+s                      +
  CDO69201.1 139 AADNKEQDGAGAGSEASgeradvplkkrrlvngkelvfrR 178
                 8877777766655555555556666666666665555552 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.8   0.00015      0.54       2      42 ..     105     145 ..     104     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
        CMS1   2 tiderkrkaenkekgkkkksekkRskkkerkkgklketqDv 42 
                 + ++rkr++e+++++k  k++ kR+kkker kgk ++ ++ 
  CDO69201.1 105 EFERRKREREEQAAAKTAKNRAKRQKKKERAKGKAADNKEQ 145
                 56899*****9999********************9877643 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.5    0.0012       4.4      39      90 ..      88     138 ..      64     160 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
  Peptidase_S49_N  39 gelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkaekkkak 90 
                      ++l++ + + + + ++ e+e++  ++ee +aa+k+ k+++k++kk+e++k k
       CDO69201.1  88 ERLKLMEEQAQKEAIEAEFERRKREREE-QAAAKTAKNRAKRQKKKERAKGK 138
                      4444444344444444444333322222.22222222222222222222222 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.3    0.0025         9     247     304 ..      82     182 ..      69     218 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0025
        SAPS 247 vkerDevrerlleeltseeealedvs....deaskeesaesedltdkdedvsleesksakd...................................... 303
                  ++r+ +r +l+ee+ +++ea+e        e++++ +a++++++ k ++ +++++++a d                                      
  CDO69201.1  82 SRRREYERLKLMEEQ-AQKEAIEAEFerrkREREEQAAAKTAKNRAKRQKKKERAKGKAADnkeqdgagagseasgeradvplkkrrlvngkelvfrrp 179
                 577888888888776.44444444431111333333333333333333333333333333355555666666666667777777777776665555544 PP

        SAPS 304 ..e 304
                   e
  CDO69201.1 180 geE 182
                 431 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.4    0.0028        10     100     162 ..      84     145 ..      18     204 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0028
                     THHHHHHC--------------.--------------------------------------SS CS
  Neur_chan_memb 100 ldklprllfmkrpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastckck 162
                      ++ +rl++m++++++++ e++ +  + +++e+   +  k+  k++k++e+  ++ka++ k +
      CDO69201.1  84 RREYERLKLMEEQAQKEAIEAEFERRKREREEQAAAKTAKNRAKRQKKKERA-KGKAADNKEQ 145
                     2334445555555444444444444444444444444444333333322222.2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2247  (0.125328); expected 358.6 (0.02)
Passed bias filter:                      812  (0.0452898); expected 358.6 (0.02)
Passed Vit filter:                       172  (0.0095934); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 1512.55
//
Query:       CDO69202.1  [L=279]
Description: hypothetical protein BN946_scf185042.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-49  165.8   0.6    1.1e-48  164.9   0.6    1.3  1  Ribosomal_S8e   Ribosomal protein S8e
  ------ inclusion threshold ------
       0.16   12.0   1.2       0.23   11.5   1.2    1.2  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   0.6   1.2e-52   1.1e-48       3     137 .]      51     278 ..      49     278 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.9 bits;  conditional E-value: 1.2e-52
                    XBXXCCCSEESSTEEXXXSSXXX..................................................CCSBXXXXXXXEE.......... CS
  Ribosomal_S8e   3 isrdskhkrkltGgkakllrkkr..................................................kielgrkekatkl.......... 38 
                    ++r s  ++k+ G+kak+l+ kr                                                  +i+ +rk+ka+k+          
     CDO69202.1  51 AHRASAVAQKAFGLKAKILHAKRhaekvqmkktlkahdernvkqkdsssapegalptylldregqkdakalstAIKEKRKDKAAKYavplpkvrgi 146
                    7999**********************************************************************************9999999877 PP

                    .SSHEEEEEEETTCEEEE..............................EEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC--TTEEEE CS
  Ribosomal_S8e  39 .gaervkvvrvrgGkrkk..............................ralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvltKgaiie 103
                     ++e++kv+  r+Gk+kk                              +alr+kkanvthp +k+t++l+IlgVkknp++++y++lgvltKg++ie
     CDO69202.1 147 aEDEMFKVM--RTGKSKKkawkrmvtkatfvgegftrkpvkmerfirpMALRYKKANVTHPDLKATFQLQILGVKKNPQSPMYTQLGVLTKGTVIE 240
                    55*******..999999999**************************************************************************** PP

                    EESHHHHHHHHTTEEE....EEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e 104 vdvseLgevtqsgkvv....AqvtsrPgqdGcvnavlL 137
                    v+vseLg+vt++gkvv    Aq+t++P++dGcvnavlL
     CDO69202.1 241 VNVSELGMVTAGGKVVfgkyAQITNNPENDGCVNAVLL 278
                    *************************************8 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   2.5e-05      0.23      68     193 ..      31     174 ..      24     189 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
                     HHHHHHHHHHHHHHHHH-S-S---HHHHHHHTTHHHHHHC--------------.-------------------.......-------------- CS
  Neur_chan_memb  68 vtlsivetvfVlnvhhrsprthtmpawvrkvfldklprllfmkrpsevkdnekklssgasseaeelilskskse.......skkaklseeqgsek 155
                     v+l+i  t ++ n  +r+ r+  ++++v + +     ++l++kr +e+ + +k+l++  +++ ++ ++s+   e       + ++ +++ +  + 
      CDO69202.1  31 VFLAID-TSTIVNRRKREAREAHRASAVAQKAFGLKAKILHAKRHAEKVQMKKTLKAHDERNVKQKDSSSAP-EgalptylLDREGQKDAKALST 123
                     666665.555566668999999999999999999999******98666655554433333333322222222.2344444344444444444444 PP

                     -----SS---TTGGG--..................-----TTTTTHHHHHH CS
  Neur_chan_memb 156 astckckckegeeaspstqlsk.............eelspelkkavegvky 193
                     a ++k k k+ + a p  + ++             ++++++ k++v+++ +
      CDO69202.1 124 AIKEKRKDKAAKYAVPLPKVRGiaedemfkvmrtgKSKKKAWKRMVTKATF 174
                     444444444444333333333345555555555544555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1982.38
//
Query:       CDO69203.1  [L=270]
Description: hypothetical protein BN946_scf185042.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-08   34.3  12.1    2.7e-08   33.7  12.1    1.3  1  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7  12.1   1.5e-12   2.7e-08      17     162 ..     119     244 ..     100     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.5e-12
        Yip1  17 p....ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkqtlsvvgyallPl 111
                 +    i+++ dla++ll++  +  +ll+s                 ++  +g+i+g  +   lg l +  ll+l+++     ++  +++sv+gy+llP+
  CDO69203.1 119 RvdehIMDDADLAGPLLFVFCFGTFLLFS-----------------GKPQFGYIYGVGV---LGSLSIYTLLNLMSE---KGIDAYRVVSVLGYCLLPM 194
                 034468999********************.................7889999888888...888888889999555...999999************* PP

        Yip1 112 ilgaliaillllllgtllllvgllaliWslvllylglkaahnlskkkalla 162
                 +  + +++++ l ++  ++l+++++++W++++ ++ + a+ ++s  + lla
  CDO69203.1 195 VAVGALSVVVTLDGML-GYLLSIISILWCTYAASGIFVAVLRMSDQRLLLA 244
                 **********999995.***************************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1821.46
//
Query:       CDO69204.1  [L=3262]
Description: hypothetical protein BN946_scf185042.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19    9.8   1.3       0.36    8.9   1.3    1.3  1  FSA_C     Fragile site-associated protein C-terminus


Domain annotation for each model (and alignments):
>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3     2e-05      0.36     432     567 ..    2978    3112 ..    2972    3176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 2e-05
       FSA_C  432 vifalpslqlhfk.tehkqgistpetaedkpevlcsfitefedhifvtvdadaffflhdlitsylsekekvlgatsaraaspnlsqkvnlkpyltde 527 
                   ifalps+ +h++ te ++gi    + + +   + + + + ed i+++++   + +l  l  s+  e e+v  +  araa       +    +++ +
  CDO69204.1 2978 TIFALPSMTMHMRsTERHDGIRRVLAYDFRSSFEKAGVKDAED-IYISLNMALYSWLTVLRKSFAREMEQVQASAEARAAVGT-GIGMSAAAQAA-H 3071
                  69*********975899********************999988.9**********************************9988.34444444444.4 PP

       FSA_C  528 vlkekkaksstsltpklmsaakssleslqgsqdsi.aiatt 567 
                   l++k+ +++ s++p    ++  s+++++    +  +i+t 
  CDO69204.1 3072 SLRKKHDTTALSVSPVDDLSSLESFSPVRTRPRARgSISTR 3112
                  56777888888888887777888888885433222333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.36u 0.32s 00:00:01.68 Elapsed: 00:00:00.50
# Mc/sec: 19734.99
//
Query:       CDO69205.1  [L=224]
Description: hypothetical protein BN946_scf185042.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00056   20.2   0.6    0.00095   19.5   0.6    1.4  1  DUF1746   Fungal domain of unknown function (DUF1746)


Domain annotation for each model (and alignments):
>> DUF1746  Fungal domain of unknown function (DUF1746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.6   5.3e-08   0.00095      81     114 ..      30      63 ..       3      64 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.3e-08
     DUF1746  81 lhgGliidFiGekapssrlellllDvlilllQlv 114
                    ++i+dF+G  a +sr  ll+lD++i+ll+++
  CDO69205.1  30 AGRSIILDFVGVDAVPSRALLLFLDFIIILLDFI 63 
                 3469***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.50
# Mc/sec: 1349.62
//
Query:       CDO69206.1  [L=1034]
Description: hypothetical protein BN946_scf185042.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.45    9.5   2.1       0.36    9.9   0.3    1.7  2  COG4      COG4 transport protein


Domain annotation for each model (and alignments):
>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.22   3.9e+03     132     157 ..     344     378 ..     334     400 .. 0.53
   2 ?    9.9   0.3     2e-05      0.36     140     197 ..     914     977 ..     909     979 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.22
        COG4 132 dtfeeerqldrllsdvksykfsflv.........r 157
                 +    + + +++++d+k+++f  ++          
  CDO69206.1 344 QALDVKSKTEQIIADIKTRAFAAAHsspeqsplgL 378
                 44444556677899999999955444333333321 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 2e-05
        COG4 140 ldrllsdvksykfsflv......rgqfpaksseaaaasaktsnesseeeegvdpreidalleEi 197
                 l+r++sd++ y+ + ++      + ++++ ++e+a+++a++ +e++ ee+++ +++i +lleE+
  CDO69206.1 914 LNRVMSDIDDYTMQEIQaakehaAREKERLAKEKAQGAANDMEEKQVEEQEPPVERIRRLLEEL 977
                 679999999999988889999998888999999999999************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 6025.23
//
Query:       CDO69207.1  [L=654]
Description: hypothetical protein BN946_scf185042.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-16   58.6   0.0    1.2e-15   58.2   0.0    1.2  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   6.6e-20   1.2e-15       2     195 ..       6     235 ..       5     270 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 6.6e-20
                    EEEEEECSTTSSTCC..-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.-CHHHHHHH.HHHHHCHSGGTTESEEEEEEESEEE..T....... CS
  Peptidase_C14   2 kAliIginnYpgtka..eLrGcanDaermaklLvkrlgFevenililtdd.ptgknirka.lkwlvksadhspgDslvvhysGHGt..rvpae... 88 
                     AliIgi++Y+  ++  +L+ +a+Da+ +++ Lv+ l+ +   i+ l d+  t++ i++  ++ lv   + +pgD+lv++++GHG   r pae   
     CDO69207.1   6 FALIIGIDKYE-SNDiwNLNSAAKDARTIEQWLVRDLQVPRGHICKLLDSqATKRGIEDTfMSHLVNNPNIEPGDALVLYFAGHGSsiRAPAEwfd 100
                    59*********.55559**************************998888889*****9975799**********************8888888*** PP

                    .......EEECTTC.........SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESESSSBCBEEEEEEES-SSS....................HC CS
  Peptidase_C14  89 .......civpvdv.........nsliqdddirdlfggdklpslagkpktiiidaCrgglldkgiekdtsptnk....................fe 148
                           +++p d+         n  i+d  +  ++  + l ++ g  +t+i+d C       +  +d +p+++                    ++
     CDO69207.1 101 qgrgdvpVLCPYDYdvkassrhvNAGISDRSLQAML--QDLAQVKGDNITLILDTCF----SLPPTSDIEPKERhhirftptrkarpedllaclWR 190
                    *******999999999*************9999999..*******************....66666666666666666777777777777777666 PP

                    CCHCHHHHHHCSHHCEEECTTTSEEEEESSSTTBSCEEETTTEEHHH CS
  Peptidase_C14 149 edssskekkpekqslsklpseadvlllsgcqddqtSadgsengsaft 195
                    +   +k + + +++ + + s +  ++l +c  +  + +  e g+ ft
     CDO69207.1 191 SAIPHKAEPFAQRGFTGAASSS-HVVLAACGSGWAATERDEGGN-FT 235
                    6666666666666666665555.444555555555555555554.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4318.77
//
Query:       CDO69208.1  [L=415]
Description: hypothetical protein BN946_scf185042.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-71  240.0   0.0    2.2e-71  239.5   0.0    1.2  1  APG6          Apg6 BARA domain
    4.7e-30  104.8  23.1    4.7e-30  104.8  23.1    1.5  2  APG6_N        Apg6 coiled-coil region
  ------ inclusion threshold ------
       0.14   12.2   2.1       0.32   11.0   2.1    1.6  1  Talin_middle  Talin, middle domain
       0.87    7.4   5.0        1.2    7.0   5.0    1.1  1  V_ATPase_I    V-type ATPase 116kDa subunit family
       0.88    8.0   3.9        1.4    7.3   3.9    1.3  1  FUSC          Fusaric acid resistance protein family
       0.99    9.5  12.8        1.8    8.7  12.8    1.3  1  UPF0242       Uncharacterised protein family (UPF0242) N-term
        6.3    5.3   7.7        8.4    4.9   7.7    1.1  1  FapA          Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> APG6  Apg6 BARA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5   0.0   8.4e-75   2.2e-71       1     179 []     236     411 ..     236     411 .. 0.98

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 8.4e-75
        APG6   1 LrktnvyndaFkIshdgkfgtInglrLGrlpsekvewsEinAAlGqtvlLLatiaeklnlkfqeyklvplGstSkiekleekseevlelyssgelklgl 99 
                 L++tnvyndaF+I hdg fgtInglrLGr+p ++vew EinAA+Gqt+lLL+tia+kl+++f++y+lvp+Gs+S+iek++ ++++ +ely+sg+l++g+
  CDO69208.1 236 LERTNVYNDAFCIGHDGVFGTINGLRLGRVPGVPVEWAEINAAWGQTLLLLYTIARKLDFTFENYRLVPMGSFSRIEKTTGDKAT-YELYGSGDLHFGR 333
                 89****************************************************************************9999996.************9 PP

        APG6 100 lfserkfDkamvafleclkqlaekvekedkelelPYkikkdkdkigdlsiklqfneeeeWtkAlkllLtnlkwllawvss 179
                 l+++r+fD amvafl+clkql+++v+++d+++++P++i kd  kig++s+k qf++ee Wt+Al+++L  lk+ll+w+++
  CDO69208.1 334 LLHNRRFDFAMVAFLDCLKQLMDYVKSQDPSVDFPHQIVKD--KIGEASVKQQFSQEEAWTRALRHVLLALKILLKWATN 411
                 999***********************************888..**********************************975 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8  23.1   1.9e-33   4.7e-30       1     133 []     102     233 ..     102     233 .. 0.95
   2 ?   -2.8   0.0       3.2   8.2e+03      31      43 ..     350     362 ..     346     399 .. 0.48

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 1.9e-33
      APG6_N   1 PlCeeCtdlLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99 
                 PlC eCt +Ll +l++qle+++kerd Y +f+k++kkek+ e  +  ++ e+e ++e+l++ee+ ++e+Lk++e+e+++le+el++le+e++ale+ee+
  CDO69208.1 102 PLCAECTHILLGTLTRQLEETKKERDGYIAFEKEVKKEKEREG-SGVNRLEAEAKIERLKEEERLAVEQLKAAEREHQQLEEELKSLEREEKALEDEEA 199
                 9*************************************98887.45555666666******************************************** PP

      APG6_N 100 rfwreynelqlelleleeeldsleaqyehaqnql 133
                 +fwr++n++ l+++e  ++l++l a+y+ ++++l
  CDO69208.1 200 EFWRQHNAHLLKQAEQADQLAALRAAYAADSANL 233
                 *****************************99876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
      APG6_N  31 flkklkkekkeee 43 
                 +lk+l ++ k+++
  CDO69208.1 350 CLKQLMDYVKSQD 362
                 4444444433322 PP

>> Talin_middle  Talin, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.1   0.00013      0.32       7      65 ..     168     227 ..     163     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
  Talin_middle   7 sridegleaiqeaeeeldkpaelpalgdDaaskrwreetldqarqn.vssqlaAmtaata 65 
                   ++++++ ++ q+ eeel++ + +++  +D++++ wr+ +++  +q+  + qlaA+ aa a
    CDO69208.1 168 EQLKAAEREHQQLEEELKSLEREEKALEDEEAEFWRQHNAHLLKQAeQADQLAALRAAYA 227
                   677899999****************************99998777515679*****9976 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.0   0.00046       1.2      41     134 ..     131     219 ..     114     265 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00046
  V_ATPase_I  41 fleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeeseeeeee 134
                  +e+e++k+++ + +       ++ + e+++++l+ee + + e+lk  ++++++l++el++l+ +++ le  ++ + ++++ +  +++e++++ 
  CDO69208.1 131 AFEKEVKKEKEREGS-----GVNRLEAEAKIERLKEEERLAVEQLKAAEREHQQLEEELKSLEREEKALEDEEAEFWRQHNAHLLKQAEQADQL 219
                 455666653333333.....34455566677777777777777777777777777777777777777776655555444222222222222222 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.9   0.00056       1.4     215     331 ..     164     233 ..     110     256 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00056
        FUSC 215 rararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellae 313
                 r ++++l+++                                                   e + ++l+++l++l+r+++a  d +a+++++   +l +
  CDO69208.1 164 RLAVEQLKAA---------------------------------------------------EREHQQLEEELKSLEREEKALEDEEAEFWRQHNAHLLK 211
                 3334444444...................................................44444455555555555555555555555555555555 PP

        FUSC 314 laqllaslraleaaiaa....a 331
                  a+  ++l+al+aa aa     
  CDO69208.1 212 QAEQADQLAALRAAYAAdsanL 233
                 5555555555555444432222 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  12.8   0.00069       1.8      41     154 ..     103     219 ..      86     235 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00069
     UPF0242  41 llaaaGsLlllllllkwekalkekl.....ekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfe 134
                 l+a +  +ll  l +++e+  ke+      ek+  +eke+  +  +    + e ++e l+eee+   e+l+a e+e ++l+ee ++L+ + +a   + +
  CDO69208.1 103 LCAECTHILLGTLTRQLEETKKERDgyiafEKEVKKEKEREGSGVN--RLEAEAKIERLKEEERLAVEQLKAAEREHQQLEEELKSLEREEKALEDEEA 199
                 6667777777777777777766655334444444444444443333..233344777777777777777777777777777777777777777777777 PP

     UPF0242 135 elkleleeqLaekqellqey 154
                 e+ ++ +++L ++ e+ +++
  CDO69208.1 200 EFWRQHNAHLLKQAEQADQL 219
                 77777777777666666655 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.7    0.0033       8.4     349     407 ..     129     197 ..     103     227 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0033
        FapA 349 l...eeeleklkkk.......ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkee 407
                 +   e+e++k k++       ++   k++  k+ e    eqlk ++++ ++l+eel++le+e k+l++e
  CDO69208.1 129 YiafEKEVKKEKERegsgvnrLEAEAKIERLKEEERLAVEQLKAAEREHQQLEEELKSLEREEKALEDE 197
                 233344444444445555222444444444444555667888888888899999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2046  (0.114117); expected 358.6 (0.02)
Passed bias filter:                      848  (0.0472977); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 2460.27
//
Query:       CDO69209.1  [L=545]
Description: hypothetical protein BN946_scf185042.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-133  444.2   0.0   1.9e-121  405.9   0.0    2.1  2  GCS       Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> GCS  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.3   2.2e-13   3.9e-09      12      41 ..     169     198 ..     167     200 .. 0.96
   2 !  405.9   0.0  1.1e-125  1.9e-121      80     364 ..     200     532 ..     199     533 .. 0.98

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.2e-13
         GCS  12 sccLQvtfqaknieearllYdqlaplaPil 41 
                 ++cLQ+tfqa+ni+ear lYd+l+p+aP++
  CDO69209.1 169 QSCLQITFQACNITEARRLYDALIPIAPLM 198
                 79***************************9 PP

  == domain 2  score: 405.9 bits;  conditional E-value: 1.1e-125
         GCS  80 eplknekkripksrydsvdlylseekrlreeyndlelpldeevlkklleagvdellakhiahlfirdplvifeekieqddekstdhFeniqstnWqtlr 178
                 +plk++++ripksry+sv+ly+se  +++++ynd+e p+d +++++l+++gvdell++hiahlfirdplvif+e+i+qdd+ s+dhFeniqstnWqtlr
  CDO69209.1 200 QPLKENRFRIPKSRYASVSLYISEYWMNQPAYNDIEAPHDPAIYERLRKHGVDELLSRHIAHLFIRDPLVIFSESIDQDDTISNDHFENIQSTNWQTLR 298
                 7899*********************************************************************************************** PP

         GCS 179 fKpPppesekigWrvefRpmevqltdfenaafsvfivLltrvilsfklnfyipiskvdenmkrAhkrdavleekfyfrkniakkeeaaekak....... 270
                 fKpPp++s+ igWrvefRpmevq+tdfena fsvf+vLl+r+il+f+ln+yipiskvd+nm rA+krdav+++kfyfrk++++   ++ ++        
  CDO69209.1 299 FKPPPANSS-IGWRVEFRPMEVQMTDFENAVFSVFVVLLSRAILHFNLNLYIPISKVDANMARAQKRDAVHSQKFYFRKDVFPPGPSQPSSIasscpst 396
                 *****8877.*************************************************************************999877666899**** PP

         GCS 271 ..........................................eieemtideiingkegefpglipliesylesvevdvetrkklekylkliskrasgel 327
                                                           e+eemt++ei+ngk + fpgl++l+ +yle++++d+e+ +++e yl+li++r++g+l
  CDO69209.1 397 pvsehggpillngvngkekklrncyplppkpddaspsgavddEYEEMTLQEIMNGKGSAFPGLLNLVYAYLETLDMDEESAREIEAYLDLIRRRTNGSL 495
                 *************************************************************************************************** PP

         GCS 328 ltaAkwiRefvakhpdYkkdSvvsdeinydLlkkvek 364
                  taA+wiR+fv++hp+Yk dSvvs+einydL+ +v++
  CDO69209.1 496 RTAASWIRNFVRSHPAYKFDSVVSQEINYDLMVAVDE 532
                 ********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3673.44
//
Query:       CDO69210.1  [L=754]
Description: hypothetical protein BN946_scf185042.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-40  139.7   0.8    2.6e-40  138.6   0.8    1.6  1  DUF1793       Domain of unknown function (DUF1793)
    3.4e-39  135.0   0.4    3.4e-39  135.0   0.4    1.9  3  DUF5127       Domain of unknown function (DUF5127)
    7.2e-21   74.6   0.2    6.4e-16   58.5   0.0    2.6  2  DUF4965       Domain of unknown function (DUF4965)
  ------ inclusion threshold ------
       0.17   10.6   0.1       0.79    8.4   0.0    1.9  2  Herpes_gE     Alphaherpesvirus glycoprotein E
       0.17   11.3   1.6       0.42   10.1   1.6    1.7  1  SKG6          Transmembrane alpha-helix domain
        7.6    6.8   6.8         22    5.3   6.8    1.9  1  PEP-CTERM     PEP-CTERM motif


Domain annotation for each model (and alignments):
>> DUF1793  Domain of unknown function (DUF1793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.8   8.5e-44   2.6e-40       1     166 []     347     514 ..     347     514 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 8.5e-44
     DUF1793   1 iGikAmseiaellgeeedakkysaiaeeyikkweelai..dgthlklaYdkedswsllYnlyaDkllglnlvpqsvyemqsafYktvaq...kyGlplD 94 
                 iG+kAm+ei+++lg++ da++y + a+ ++ +w++la   d+thl   Y++++sw llYn+yaD+llg++       + q+afY+t +q   +yG+plD
  CDO69210.1 347 IGVKAMAEISRALGQDLDAQQYDSHAAALVGSWQSLASsaDQTHLLGFYGNQKSWALLYNIYADRLLGTD----ILLKDQTAFYQTLLQsshPYGVPLD 441
                 8*************************************77779*************************55....56889********99999******* PP

     DUF1793  95 srht.ytksdWelfaaavask.ktreelissvakwvnetktdrpftdlYdtegtgglpgfrarpvvGGhFalLa 166
                 s    +t+++W++f+aa++++ ++r+ +++ v++ +n++ t  +f+d Yd+ +tg+l + +a p+ G++F lLa
  CDO69210.1 442 SSIGdVTSAAWQMFTAAIVQDdNVRNGFVDGVWARANDNFTAGAFPDSYDA-TTGDLLSGTAGPAAGAMFSLLA 514
                 *9955**************999****************************8.7*******************97 PP

>> DUF5127  Domain of unknown function (DUF5127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.4   1.1e-42   3.4e-39      60     226 ..       4     177 ..       2     178 .. 0.95
   2 ?   -3.4   0.0       2.2   6.6e+03     131     149 ..     314     332 ..     291     361 .. 0.65
   3 ?   -3.0   0.0       1.7   4.9e+03     114     131 ..     454     471 ..     422     484 .. 0.71

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 1.1e-42
     DUF5127  60 aewasgdesqevewstt.tgglayhkvgrqnqevlsekndradwGyaylatkakss.ltyqsgedtevrkqFvkngklantkdtnfraisddwpvfala 156
                 aew+sgd+s+ v+ws++ t+g  yh++  q+++++ e n +a++G+ay+a++ ++  lt+q+ +d ++r+qF ++g+l+ t +t+f +is    v a+a
  CDO69210.1   4 AEWLSGDRSSLVQWSQHaTSGSIYHEIDLQSPQPFVEINHQAQDGTAYYAMA-NTPgLTWQIAQDVTCRGQFHDHGNLTGTFTTSFASISPVFTVYAIA 101
                 79**************8558********************************.8789****************************************** PP

     DUF5127 157 hdlgsvssesksvvfaiGyvrdpaiqylg.....qnlrpyW.rskyssiedalsaflkdyaaalkrsealDkkira 226
                 +dlg ++s+s++v++a+Gyvr+p+iqy++     q+l+py+ +++ ++i +a++a  + y+++l+++ a+D+ i a
  CDO69210.1 102 VDLGVIQSTSNPVTWAVGYVRNPTIQYTTadgitQKLSPYFvTKYGTNIGQAIDAITSAYPDVLQKAVAFDEAIIA 177
                 ******9989******************999999*******6666678************************9965 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
     DUF5127 131 kngklantkdtnfraisdd 149
                 ++gk+++t+dt  r+  d+
  CDO69210.1 314 SHGKMQSTDDTPLRETADN 332
                 3444444444444444333 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.7
     DUF5127 114 sltyqsgedtevrkqFvk 131
                   t ++ +d++vr+ Fv+
  CDO69210.1 454 MFTAAIVQDDNVRNGFVD 471
                 267777788888888876 PP

>> DUF4965  Domain of unknown function (DUF4965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   2.2e-19   6.4e-16       3      79 ..     183     268 ..     181     283 .. 0.90
   2 !   13.7   0.2   1.3e-05     0.038     137     159 ..     288     310 ..     271     320 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2.2e-19
     DUF4965   3 gekYadllalsvRqafaalelv......skdetsevllflKeiss...ngnvntvDviypalPlflylnpellkllLeplleyqes 79 
                 + +Yadl++l++Rq++++l+++      ++ + s+v +f+K++ +    g+v++v+ iy+alP +ly+n++l+  lL+pll+ q+s
  CDO69210.1 183 SPHYADLVSLALRQTMGSLDITvpissdGTANASDVRIFMKDVGAstsAGRVSPVERIYAALPALLYVNASLVGPLLAPLLDAQDS 268
                 789**********************98779************9652327*********************************9987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.3e-05
     DUF4965 137 yydllkqWadYLvengldpanql 159
                  y+l k+WadYLv+n+l+p+nq 
  CDO69210.1 288 SYNLTKRWADYLVANSLTPNNQY 310
                 58999****************96 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00026      0.79     332     379 ..     542     589 ..     517     601 .. 0.82
   2 ?   -1.0   0.2      0.19   5.5e+02     315     345 ..     648     679 ..     634     688 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 332 keiappnngtsraalllaavliaalllvllglsalvcltkrrrrkkrr 379
                 +++++   gt+++   ++ v++++++l+l gl+ +  + +rrr   r 
  CDO69210.1 542 SNGEGSAKGTTPVGAIAGGVVGGIVILALAGLGLFLFMRRRRRGGPRT 589
                 5677888999999999**********************9999966555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.19
                 E---XXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 315 eqhlPqr.dedeaestkskeiappnngtsraa 345
                 ++ +Pq+ +ed+++  +ske++++ n   ++a
  CDO69210.1 648 QYLMPQPvQEDPVSRQSSKERERERNTRLQYA 679
                 567899889999999******99999887765 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.6   0.00014      0.42       6      38 .]     551     583 ..     547     584 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
        SKG6   6 nsntvaIavaVaVPVaViiivLlailifvrRRk 38 
                  +   aIa +V+ ++++ +++ l++++f rRR+
  CDO69210.1 551 TTPVGAIAGGVVGGIVILALAGLGLFLFMRRRR 583
                 556679*************99777777788875 PP

>> PEP-CTERM  PEP-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.8    0.0073        22       8      23 .]     568     583 ..     555     584 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0073
   PEP-CTERM   8 llLlGlGllGlalrRr 23 
                 l+L+GlGl+ +++rRr
  CDO69210.1 568 LALAGLGLFLFMRRRR 583
                 89********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4808.93
//
Query:       CDO69211.1  [L=223]
Description: hypothetical protein BN946_scf185042.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-05   23.1   2.3    0.00018   22.2   2.3    1.5  1  VanZ             VanZ like family
  ------ inclusion threshold ------
      0.072   13.2   0.4      0.072   13.2   0.4    1.5  2  Phage_holin_3_3  LydA holin phage, holin superfamily III
      0.094   11.8   6.4       0.13   11.3   6.4    1.2  1  Acyl_transf_3    Acyltransferase family
       0.12   11.2   4.4       0.15   10.9   4.4    1.1  1  AA_permease_2    Amino acid permease
       0.97    9.3   7.8        1.4    8.8   0.5    2.9  3  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> VanZ  VanZ like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   2.3   4.9e-08   0.00018      57     123 ..      36     119 ..       5     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.9e-08
        VanZ  57 gnvalfvp....lGfllplllkkkflk...................vlllgf.llslsiElhQlfvpgRsfdvdDvilntlGallGillyl 123
                  ++++f+      G++ ++       +                   + +++f +  ++ E++Q ++p++ f+  D+  n lG  lG+++++
  CDO69211.1  36 DKLLHFLCmalaTGVFYFI-------FdveedarriwfwrsaplifSGIVCFfFGGIISEIVQSMLPYKEFQAGDIAANLLGSTLGLYIAY 119
                 3566666633222333222.......134444445556779998885555551556677****************************9987 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4       3.9   1.4e+04      41      49 ..      13      21 ..      11      24 .. 0.46
   2 ?   13.2   0.4     2e-05     0.072       3      50 ..      41      91 ..      39      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.9
  Phage_holin_3_3 41 vGllvfllc 49
                     +++++  l+
       CDO69211.1 13 TCVILIVLA 21
                     555544443 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2e-05
  Phage_holin_3_3  3 iivlAllGGlvsylmrakkgrrrfsike...llleivvSgfvGllvfllce 50
                     ++++Al+ G+  ++ ++++  rr ++++   l+++ +v+ f G + + ++ 
       CDO69211.1 41 FLCMALATGVFYFIFDVEEDARRIWFWRsapLIFSGIVCFFFGGIISEIVQ 91
                     579*****************6665555559************998887765 PP

>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.4   3.7e-05      0.13     158     246 ..       6      90 ..       3     135 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.7e-05
                    xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 158 rkshlllllilllllslv.firhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdg 246
                    r++++++++++l++l+l+ f ++ +  p +  +l++l     ++ ++ G++++ +d +   ++  +++s++l + ++++++++   +   
     CDO69211.1   6 RPWFVVFTCVILIVLALLgFTNFSHALPLNDKLLHFL-----CMALATGVFYFIFDVEEDARRIWFWRSAPLIFSGIVCFFFGGIISEIV 90 
                    4444444444444444440333344444444444444.....9***********************************999998877754 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.4   4.2e-05      0.15     325     401 ..       8      86 ..       4     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.2e-05
  AA_permease_2 325 iiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl.krpgki...lvaiigalfllfllva 401
                    ++++++++ il++l ll+  ++++  l +   +l + +++l++g+++  ++ ++  +r++++   ++ + g+++++f  ++
     CDO69211.1   8 WFVVFTCV-ILIVLALLG-FTNFSHALPLNDKLLHFLCMALATGVFYFIFDVEEDaRRIWFWrsaPLIFSGIVCFFFGGII 86 
                    44555554.666666654.689************************99999887736655544448888889999998765 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.0       2.3   8.1e+03      21      31 ..      15      25 ..      10      26 .. 0.74
   2 ?    8.8   0.5   0.00038       1.4      10      34 ..      64      87 ..      63      93 .. 0.90
   3 ?    4.1   0.0     0.011        41      28      52 ..     108     134 ..     104     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.3
    LapA_dom 21 llllvafgiGa 31
                ++l+v +++G+
  CDO69211.1 15 VILIVLALLGF 25
                67777777776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00038
    LapA_dom 10 flfaqvelpLsllllvafgiGallg 34
                ++f++ ++pL++  +v+f++G ++ 
  CDO69211.1 64 IWFWR-SAPLIFSGIVCFFFGGIIS 87
                89**9.***************9985 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.011
    LapA_dom  28 giGallgwllslw..sylrlrrelrrl 52 
                 ++G  lg+ +++   +y r+rre++rl
  CDO69211.1 108 LLGSTLGLYIAYHleRYYRHRREISRL 134
                 677777888887445888*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1515.50
//
Query:       CDO69212.1  [L=508]
Description: hypothetical protein BN946_scf185042.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.012   15.4   1.0      0.028   14.2   0.4    1.9  1  SBD_N            Sugar-binding N-terminal domain
      0.075   13.1   0.3        4.7    7.3   0.2    2.6  2  TolA_bind_tri    TolA binding protein trimerisation
       0.18   11.7   0.8        3.3    7.7   0.1    2.6  2  Pox_A_type_inc   Viral A-type inclusion protein repeat
        3.2    7.9   5.1         23    5.1   0.2    3.0  4  Cob_adeno_trans  Cobalamin adenosyltransferase


Domain annotation for each model (and alignments):
>> SBD_N  Sugar-binding N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   6.2e-06     0.028      89     195 ..     154     266 ..     151     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHHHHH...-.........EEEE--BGGGTEEEETTEEEETTEEGGGSGGGC-SSS----SBHHHHHHCC-SSEEEEE-HHHHTTTCHHHHHH CS
       SBD_N  89 igaevdaladal...l..gp.....aivvPafpeggRttvdgvlfvegvpleetefardpltpmkesdLrdlleeqtkekvglidletlaegaealaea 177
                 i+ ++ a+ + l   +  g+       vv+   ++gR  +++ l+   + l++ e + d++ + + s Lr  +ee  + kv+l    + +++ +++a+a
  CDO69212.1 154 IAGVTHAVKEILsiaIgdGKnlpqsSQVVAVHIQTGRALIKNALLTCRTALRHAELEADAVLAGT-SSLRGQMEEAKA-KVHLEVFGSPDKDGDEIAKA 250
                 55556666666654312211333555566899********************************9.89*****99865.555555558888999****9 PP

                 HHHHHHCTECEEEE-BSS CS
       SBD_N 178 leallaegervvvvDavs 195
                 +++++++    + +Da++
  CDO69212.1 251 VAQARQS--VKLTMDALQ 266
                 9998876..478888875 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.023     1e+02      35      46 ..     219     230 ..     210     234 .. 0.82
   2 ?    7.3   0.2    0.0011       4.7      26      43 ..     491     508 .]     485     508 .] 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.023
  TolA_bind_tri  35 reLRGqiEelqy 46 
                    ++LRGq+Ee + 
     CDO69212.1 219 SSLRGQMEEAKA 230
                    78******9875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0011
  TolA_bind_tri  26 qlealqqelreLRGqiEe 43 
                    ++++l+ e+r+L GqiE+
     CDO69212.1 491 EVQQLKDEVRSLEGQIEK 508
                    689*************95 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.056   2.5e+02      11      17 ..     291     297 ..     290     298 .. 0.92
   2 ?    7.7   0.1   0.00074       3.3       2      16 ..     491     505 ..     490     508 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.056
  Pox_A_type_inc  11 sDLErqL 17 
                     +DLEr+L
      CDO69212.1 291 RDLERKL 297
                     8*****9 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00074
  Pox_A_type_inc   2 EmsrlRsRIsDLErq 16 
                     E+++l++++++LE q
      CDO69212.1 491 EVQQLKDEVRSLEGQ 505
                     9***********965 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.025   1.1e+02     105     134 ..     182     211 ..     143     218 .. 0.82
   2 ?    0.4   0.0      0.14   6.2e+02       9      50 ..     217     258 ..     216     276 .. 0.73
   3 ?    5.1   0.2    0.0052        23      88     135 ..     251     298 ..     230     318 .. 0.76
   4 ?   -2.2   0.0      0.87   3.9e+03      74      96 ..     479     507 ..     447     508 .] 0.55

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.025
                      EESEEES-SSHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans 105 lksfilpggspaaaalhvaRtvcRraERav 134
                      ++ +i  g      al  +Rt  R aE ++
       CDO69212.1 182 VAVHIQTGRALIKNALLTCRTALRHAELEA 211
                      455677777778889999*********986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                      XXXXXXXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT CS
  Cob_adeno_trans   9 GtTslvggervsKddprveayGtvDelnsaiglarallaeee 50 
                      Gt+sl g+ + +K++  +e++G+ D+    i  a a+++++ 
       CDO69212.1 217 GTSSLRGQMEEAKAKVHLEVFGSPDKDGDEIAKAVAQARQSV 258
                      999999999999999999999998877766666665554443 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0052
                      HHHHHHHHHHHHHHS--EESEEES-SSHHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  88 veelekeideleaelpplksfilpggspaaaalhvaRtvcRraERavv 135
                      v++  + ++   + l+  k f      +++  + v R++cR  ER++v
       CDO69212.1 251 VAQARQSVKLTMDALQWYKLFWRVDDIREVVTAAVDRAWCRDLERKLV 298
                      556666666566666667777777777888889999**********98 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.87
                      ........-BTCCG-S--HHHHHHHHHHHH CS
  Cob_adeno_trans  74 p.......ekkkekkkiteeeveelekeid 96 
                              ++k e +++++e v+ le +i+
       CDO69212.1 479 AglegiasKRKAEVQQLKDE-VRSLEGQIE 507
                      34444433344444455544.777887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3586.33
//
Query:       CDO69213.1  [L=360]
Description: hypothetical protein BN946_scf185042.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-71  241.0   0.1    2.1e-71  240.7   0.1    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.7   0.1   1.2e-75   2.1e-71       3     294 .]      28     325 ..      27     325 .. 0.94

  Alignments for each domain:
  == domain 1  score: 240.7 bits;  conditional E-value: 1.2e-75
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallr 98 
                 +gig TPl+rl++ls+++g+++ +K E  np+gS+KdR+a  ++ +++e    +++ tvve+++GN+g++lA+++++ G++++i++p++ s+ek++llr
  CDO69213.1  28 GGIGSTPLIRLQKLSEQTGCDIVAKSELQNPGGSVKDRAALGVIRDAEERgllKPGGTVVEGTAGNTGIGLAHVCRARGYRCVIFMPDTQSQEKIDLLR 126
                 589*******************************************88888************************************************ PP

                 HTT-EEEEECCH.HHHHHHH...HHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EEEEEE CS
        PALP  99 llGaevvevggd.ydeavaa...aaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglke.rrpdvrvigve 191
                 +lGaev  v+   y++ +++   a+++a++ ++a++++qfdn ++ e+ y t+g+Ei+eq++gk+da+++++G+Gg++aG++++lke ++++++v  ++
  CDO69213.1 127 MLGAEVYPVPAVaYENPKNYnhqARDFAKDLPNAIWTDQFDNTANAEAhYRTTGPEIWEQTQGKVDAFICATGTGGTLAGTGRALKEkSNGKTQVWLAD 225
                 *********6665777766677799**************************************************************99999******* PP

                 ECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEE CS
        PALP 192 pegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvv 290
                 p   + l++++  g  +t  ++++i +g++ g+ ++  +  + + +d +  ++de +++++  l  +eg+ ++ ssa ++ a+  + a++l++g+++ +
  CDO69213.1 226 PP-GSVLYSYISSGGKLTERSGSSITEGIGQGRITNN-LGTFVKNIDGALHIPDEKTIAMLYDLLDTEGLYLGASSALNVVAA-VELAKKLGPGKTIAT 321
                 *9.5667777779999999999**********55555.5555577888***********************************.*************** PP

                 EE-B CS
        PALP 291 iltg 294
                 il++
  CDO69213.1 322 ILCD 325
                 **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2761.58
//
Query:       CDO69214.1  [L=165]
Description: hypothetical protein BN946_scf185042.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-64  214.1   0.5    9.4e-61  204.3   0.5    2.0  1  Arf        ADP-ribosylation factor family
    1.5e-11   44.6   0.1    2.8e-11   43.7   0.1    1.4  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    3.9e-09   36.3   0.0    4.5e-09   36.1   0.0    1.2  1  Ras        Ras family
      5e-08   32.5   0.3    1.8e-07   30.6   0.2    1.9  2  G-alpha    G-protein alpha subunit
      4e-07   29.6   0.0      6e-07   29.1   0.0    1.3  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
      2e-06   27.3   0.0    2.8e-05   23.6   0.0    1.9  2  SRPRB      Signal recognition particle receptor beta subunit
     0.0013   18.8   0.0     0.0022   18.1   0.0    1.4  1  MMR_HSR1   50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.5   3.7e-64   9.4e-61       2     175 .]       6     160 ..       5     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 3.7e-64
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHH CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleea 100
                 ++ l kl++ +ke+r+l+lGLD+aGK                 Tigfnve++++kn+kf+vwDvGGq+k+RplW++Y++ t++++fvvDs+dreR++ea
  CDO69214.1   6 SKALGKLFG-NKEMRLLMLGLDAAGK-----------------TIGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLVFVVDSQDRERIDEA 86 
                 6789999*9.****************.................59****************************************************** PP

                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlsesi 175
                 k+eL+++l+++e+ke+ llv+aNKqDlp+a+s +e++e+lgl++++ +r++++  ++a++gegl egl+wls+++
  CDO69214.1  87 KQELHRILSDREMKECLLLVFANKQDLPGAMSPAEVTEKLGLHRMR-DRSWYVHPSCATTGEGLFEGLQWLSQNV 160
                 **********************************************.*************************985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   1.1e-14   2.8e-11      32     119 ..      23     112 ..      11     113 .. 0.68

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.1e-14
                 TTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHHHHH....CSSS-E.EEEEE-TT CS
         Roc  32 igvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlkelkkv....agkspv.ilvgnkiD 119
                 +g+d + k++  + +ve+  + k+vk+n+WD++Gq+++r l ++y+++ + +++v+ds++ e+++e  +el++       k+++ ++ +nk D
  CDO69214.1  23 LGLDAAGKTIG-F-NVET-VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLVFVVDSQDRERIDEAKQELHRIlsdrEMKECLlLVFANKQD 112
                 56666666652.2.2222.346789********************************877665544444444431111444444156679998 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.7e-12   4.5e-09      31     125 ..      31     125 ..      20     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.7e-12
                 TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.TTSEEEEEEETTTGGG...G-SS-HH CS
         Ras  31 TigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvDlee...kravste 125
                 Tig++   +  +v  k+vk+++wD  Gq++ + l + yy++++g++ v d ++re  +++k+ ++ i +  e +++ +++ +nK Dl       +v+++
  CDO69214.1  31 TIGFNV--E--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLVFVVDSQDRERIDEAKQELHRILSDREmKECLLLVFANKQDLPGamsPAEVTEK 125
                 554333..2..344689*******************************************976666666655588999999*****9764333444444 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.039     1e+02      21      37 ..      15      31 ..       6      36 .. 0.86
   2 !   30.6   0.2   7.1e-11   1.8e-07     186     281 ..      29     113 ..      25     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
                ..EEEEEEEESTTSSHH CS
     G-alpha 21 krevkllllGqseSGKs 37
                ++e++ll+lG +  GK+
  CDO69214.1 15 NKEMRLLMLGLDAAGKT 31
                469*************8 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 7.1e-11
                 ----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHH CS
     G-alpha 186 lktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDi 281
                  kt+G++  ++ ++ +++f+++dvgGq + r+ W +++++++ ++F+v           ++   r++e+ +  + i++ +++k++ +++f nK D+
  CDO69214.1  29 GKTIGFNVETVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLVFVVD----------SQDRERIDEAKQELHRILSDREMKECLLLVFANKQDL 113
                 58999999999998.********************************98..........44458******************************96 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.3e-10     6e-07      32     125 ..      29     115 ..      19     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.3e-10
   Gtr1_RagA  32 gatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletlkeilealrqyspeakvfvlihKmDliq 125
                 g ti  + ++v +++n+++n+wD+gGq+++          + ++  + l++V+D+++re ++e+ ++l++il+   +  +e  + v+ +K Dl  
  CDO69214.1  29 GKTIGFNVETV-TYKNVKFNVWDVGGQDKIRPLW-----RHYYTGTQGLVFVVDSQDRErIDEAKQELHRILSD--REMKECLLLVFANKQDLPG 115
                 68999999999.79**************987764.....7889999**********998799999999999986..4557778888888888755 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.049   1.3e+02       3      21 ..      17      35 ..      15      40 .. 0.84
   2 !   23.6   0.0   1.1e-08   2.8e-05      45     137 ..      40     126 ..      34     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.049
                --EEEEE-STTSSHHHHHH CS
       SRPRB  3 kpavllvGlsdsGKTslft 21
                + ++l++Gl  +GKT  f+
  CDO69214.1 17 EMRLLMLGLDAAGKTIGFN 35
                66899**********9886 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.1e-08
                 ..GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB  45 sekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeilliteklkdavdiliACnKqelflakspklikdaL 137
                 + k+ k+++ D+ G++k+r     +  + +  +glvfvvDS  d  ++ e    l  il++ e   ++  +l+  nKq+l  a sp  + ++L
  CDO69214.1  40 TYKNVKFNVWDVGGQDKIRPL-WRH--YYTGTQGLVFVVDSQ-DRERIDEAKQELHRILSDRE--MKECLLLVFANKQDLPGAMSPAEVTEKL 126
                 458999************975.555..57889********97.78889999999*******99..4557789999******999999888876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.5e-07    0.0022      28     110 ..      26     104 ..      15     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.5e-07
                 SSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT.TTCSHHHHHHHHHHHHH.TTSEEEE CS
    MMR_HSR1  28 dkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas.eeklkpldeeleellee.akkplil 110
                 d +g+T+  n ++v++k+ +++++D+ G  +      +++  ++     ++ +++vvd++ +e +++ ++el+++l++ ++k+++l
  CDO69214.1  26 DAAGKTIGFNVETVTYKNVKFNVWDVGG-QD------KIRPLWRHYYTgTQGLVFVVDSQdRERIDEAKQELHRILSDrEMKECLL 104
                 5689************************.43......23333333333479*******6675689999999999987644444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1249.81
//
Query:       CDO69215.1  [L=104]
Description: hypothetical protein BN946_scf185042.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   12.4   0.0       0.08   12.3   0.0    1.2  1  Macro_2   Macro-like domain


Domain annotation for each model (and alignments):
>> Macro_2  Macro-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.5e-06      0.08     182     214 ..      42      74 ..      10      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.5e-06
     Macro_2 182 vdgliisGlctGyaGvpaeiscksmafalslym 214
                 + ++ ++Gl tG   vpa++  +  afa++ ++
  CDO69215.1  42 ITSVGMTGLATGIGMVPADVCARQTAFAFAHFY 74 
                 567789**********************97554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 841.04
//
Query:       CDO69216.1  [L=733]
Description: hypothetical protein BN946_scf185042.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-11   44.4  17.3    5.1e-09   35.8   7.3    3.7  4  LRR_8     Leucine rich repeat
    3.3e-11   43.2  16.4    1.4e-05   25.4   2.2    4.7  6  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.033   13.7   0.2      0.094   12.2   0.1    1.7  1  LRR_9     Leucine-rich repeat
       0.24   11.5  14.5        3.8    7.8   1.1    5.3  5  LRR_6     Leucine Rich repeat
       0.61   10.8  14.6        9.9    7.2   0.1    6.0  5  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.25   9.1e+02      16      28 ..     187     199 ..     183     200 .. 0.77
   2 ?   -2.2   0.0         1   3.7e+03       2      18 ..     217     233 ..     216     237 .. 0.85
   3 !   35.8   7.3   1.4e-12   5.1e-09       3      61 .]     314     371 ..     313     371 .. 0.96
   4 !   12.8   0.4   2.2e-05     0.077      23      61 .]     380     416 ..     376     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.25
                 E-TTSSTT-TT-- CS
       LRR_8  16 lddeaFkglsnLk 28 
                 l+ +aFk+l++L+
  CDO69216.1 187 LPLDAFKNLQSLQ 199
                 6778899998886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                 T-SEEE-TTS--SEE-T CS
       LRR_8   2 nLtsLdLsnNrltsldd 18 
                 +L+sL + ++ l++++d
  CDO69216.1 217 SLHSLTVKRSGLEDVSD 233
                 69999999999999987 PP

  == domain 3  score: 35.8 bits;  conditional E-value: 1.4e-12
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L+ L+L +N lt l+ +  ++ls+L++LdLs+Nll ++ p  +s L +L +L+Ls+N +
  CDO69216.1 314 LRHLSLADNALTFLPTSILSQLSSLTHLDLSSNLLVSV-PPGLSALYNLVYLNLSDNMI 371
                 899***********************************.78899999**********76 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 2.2e-05
                 T-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +l ++ +L+Ls+N+l+++    ++ L +L+  dL++N +
  CDO69216.1 380 KLGGVLTLNLSRNRLESIC--GLERLLALERVDLRHNLI 416
                 57788999*********96..999999999999999986 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.29     1e+03      19      30 ..     190     200 ..     184     209 .. 0.71
   2 !   25.4   2.2   3.8e-09   1.4e-05       3      39 ..     314     351 ..     314     357 .. 0.89
   3 !   24.1   3.1   9.3e-09   3.3e-05       2      39 ..     337     374 ..     336     382 .. 0.89
   4 !   13.0   2.0   2.9e-05       0.1       2      42 ..     360     400 ..     359     402 .. 0.83
   5 !   14.1   0.8   1.4e-05     0.049       5      37 ..     386     417 ..     383     430 .. 0.87
   6 !    8.9   0.0   0.00057         2       3      38 ..     406     443 ..     404     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.29
                 HHH-TT--EEE- CS
       LRR_4  19 leklpnLkeLdL 30 
                  + ++nL++L +
  CDO69216.1 190 DA-FKNLQSLQC 200
                 33.999999988 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 3.8e-09
                 --EEE--SS---E-S-..HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl..leklpnLkeLdLsgNnlitdl 39 
                 L++L+L++N lt +p   l++l +L++LdLs+N l+ ++
  CDO69216.1 314 LRHLSLADNALTFLPTsiLSQLSSLTHLDLSSN-LLVSV 351
                 9***************98889*********999.77665 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 9.3e-09
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 +L++LdLs+N l ++p+ l+ l nL +L+Ls+N  i+++
  CDO69216.1 337 SLTHLDLSSNLLVSVPPgLSALYNLVYLNLSDN-MIDSV 374
                 8****************9888*********998.77765 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 2.9e-05
                 S--EEE--SS---.E-S-HHH-TT--EEE-.-S-----GGGG CS
       LRR_4   2 nLevLdLsnNqlt.diplleklpnLkeLdLsgNnlitdldeL 42 
                 nL +L+Ls+N++   ++   kl    +L+Ls+N +++++ +L
  CDO69216.1 360 NLVYLNLSDNMIDsVLGIYTKLGGVLTLNLSRN-RLESICGL 400
                 899**********55555668*********999.99988555 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 1.4e-05
                 EEE--SS---E-S-HHH-TT--EEE-.-S---- CS
       LRR_4   5 vLdLsnNqltdiplleklpnLkeLdLsgNnlit 37 
                 +L+Ls N+l +i +le l  L+ +dL +N li+
  CDO69216.1 386 TLNLSRNRLESICGLERLLALERVDLRHN-LIE 417
                 7*************999*********555.885 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.00057
                 --EEE--SS---.E-S-..HHH-TT--EEE-.-S----- CS
       LRR_4   3 LevLdLsnNqlt.dipl..leklpnLkeLdLsgNnlitd 38 
                 Le +dL++N +  + +   l+ lpn  e+++ gN ++  
  CDO69216.1 406 LERVDLRHNLIEeSAEIgrLATLPNIAEVWVEGN-PLVE 443
                 999*********5555587778*********999.4435 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.6e-05     0.094      47     133 ..     364     450 ..     356     464 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
       LRR_9  47 idlsdndirkldg.fPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkke.yrl 133
                 ++lsdn i  + g +  l  + tl l+ nr+  i  gle+ l  le + l +n ++e a++  la+l+++  + +  np+++ +e yr 
  CDO69216.1 364 LNLSDNMIDSVLGiYTKLGGVLTLNLSRNRLESIC-GLERLL-ALERVDLRHNLIEESAEIGRLATLPNIAEVWVEGNPLVEIEEgYRI 450
                 689*****98766267899999*********9997.787765.7***********************************9886543775 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.04   1.4e+02       5      16 ..     314     325 ..     312     325 .. 0.89
   2 ?    7.8   1.1    0.0011       3.8       3      14 ..     336     347 ..     334     350 .. 0.87
   3 ?    4.0   0.1     0.018        63       4      16 ..     360     372 ..     357     374 .. 0.85
   4 ?    1.1   0.2      0.15   5.4e+02       6      15 ..     385     394 ..     384     396 .. 0.84
   5 ?    0.8   0.1      0.19     7e+02       5      15 ..     406     416 ..     406     417 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.04
       LRR_6   5 LteLdLsgNdIg 16 
                 L++L+L++N ++
  CDO69216.1 314 LRHLSLADNALT 325
                 9********986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
       LRR_6   3 thLteLdLsgNd 14 
                 ++Lt+LdLs+N 
  CDO69216.1 336 SSLTHLDLSSNL 347
                 89*********6 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.018
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L +L+Ls+N I+
  CDO69216.1 360 NLVYLNLSDNMID 372
                 799*******775 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.15
       LRR_6   6 teLdLsgNdI 15 
                  +L+Ls N +
  CDO69216.1 385 LTLNLSRNRL 394
                 58******87 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.19
       LRR_6   5 LteLdLsgNdI 15 
                 L+ +dL++N I
  CDO69216.1 406 LERVDLRHNLI 416
                 7899*****88 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.069   2.5e+02       2      20 ..     314     331 ..     313     335 .. 0.77
   2 ?    7.2   0.1    0.0028       9.9       1      17 [.     337     353 ..     337     358 .. 0.75
   3 ?    2.7   0.1     0.081   2.9e+02       1      12 [.     360     371 ..     360     378 .. 0.85
   4 ?    1.9   0.4      0.15   5.2e+02       4      14 ..     386     396 ..     385     404 .. 0.78
   5 ?    1.2   0.1      0.26   9.3e+02       2      12 ..     406     416 ..     405     456 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.069
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 LrhL L +n l+ ++p s+
  CDO69216.1 314 LRHLSLADNALT-FLPTSI 331
                 9********994.665554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0028
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L+hLdLs+n l + pp
  CDO69216.1 337 SLTHLDLSSNLLVSVPP 353
                 69********9944443 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.081
       LRR_1   1 nLrhLdLsnnpl 12 
                 nL +L+Ls+n +
  CDO69216.1 360 NLVYLNLSDNMI 371
                 899*******77 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.15
       LRR_1   4 hLdLsnnpllg 14 
                 +L+Ls+n+l++
  CDO69216.1 386 TLNLSRNRLES 396
                 69******943 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.26
       LRR_1   2 LrhLdLsnnpl 12 
                 L++ dL++n +
  CDO69216.1 406 LERVDLRHNLI 416
                 89999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5444.42
//
Query:       CDO69217.1  [L=395]
Description: hypothetical protein BN946_scf185042.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-29  101.2   5.8    2.6e-14   52.8   0.8    2.5  2  UBA          UBA/TS-N domain
    5.9e-22   77.2   1.5    9.6e-22   76.5   1.5    1.4  1  ubiquitin    Ubiquitin family
    5.3e-19   67.7  10.5    5.3e-19   67.7  10.5    2.2  1  XPC-binding  XPC-binding domain
    1.7e-08   34.1   1.7    3.4e-08   33.2   1.5    1.6  2  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
    0.00069   19.7   0.1     0.0017   18.5   0.1    1.6  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
     0.0017   18.9   0.0     0.0036   17.9   0.0    1.5  1  DUF2407      DUF2407 ubiquitin-like domain
     0.0027   17.5   0.0       0.53   10.1   0.0    2.4  2  UBA_3        Fungal ubiquitin-associated domain
     0.0038   17.7   0.3      0.007   16.8   0.3    1.4  1  Ubiquitin_2  Ubiquitin-like domain
     0.0063   16.3   0.1        2.7    7.8   0.0    2.4  2  WIYLD        Ubiquitin-binding WIYLD domain
  ------ inclusion threshold ------
      0.015   15.0   0.0       0.13   12.0   0.0    2.5  3  CUE          CUE domain
      0.024   14.6   0.7      0.066   13.3   0.5    1.8  2  Ubiquitin_4  Ubiquitin-like domain
      0.038   14.3   0.2      0.072   13.4   0.2    1.4  1  Ubiquitin_5  Ubiquitin-like domain
       0.69   10.5  23.5        0.4   11.3   9.3    2.4  2  Pex14_N      Peroxisomal membrane anchor protein (Pex14p) con


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.8   1.9e-17   2.6e-14       3      37 .]     151     185 ..     149     185 .. 0.97
   2 !   50.8   0.3     8e-17   1.1e-13       2      37 .]     352     387 ..     351     387 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.9e-17
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 +++iq++ eMGF+re+v +ALra++nN+ErAveyL
  CDO69217.1 151 QATIQNMIEMGFEREQVMRALRASFNNPERAVEYL 185
                 799*******************************9 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 8e-17
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 + +ai+rL ++GF+r  v+eA++a+++NeE+A++yL
  CDO69217.1 352 ERAAIERLEALGFPRHVVIEAYFACDKNEEMAANYL 387
                 6799*******************************9 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   1.5     7e-25   9.6e-22       1      71 [.       3      73 ..       3      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 7e-25
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                itvktl++k + ++ e sdtv++lK+ki+e++g  +e+q+LiysGkvL d++++e++ i+++++l+l++++
  CDO69217.1  3 ITVKTLQQKVFQIDAEGSDTVADLKKKIQETQGHSVESQKLIYSGKVLPDSKSVESCEIKEKDFLVLMVSK 73
                8*******************************************************************987 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7  10.5   3.9e-22   5.3e-19       1      55 [.     275     329 ..     275     331 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 3.9e-22
  XPC-binding   1 LefLrnnpqFqqlRqlvqqnPqlLqplLqqlaqsnPqllqlIqqnqeeFlqlLne 55 
                  L++L+n+pq+q+lR++++qnP+l+qp++q+la++nPql+q+++q++e++ q+L++
   CDO69217.1 275 LAALANHPQIQHLREIMAQNPALIQPVIQELAAQNPQLAQMFAQHPEALAQILGG 329
                  89***************************************************87 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   1.5   2.4e-11   3.4e-08       1      71 [.       1      70 [.       1      71 [. 0.96
   2 ?   -3.7   0.0       7.9   1.1e+04      25      48 ..     166     188 ..     154     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.4e-11
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEE CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvv 71
                +ki++k+ ++k ++i  + + tv +L+++ ++ +g ++ ++++Li+ G+ L + + ve+ +i+++d++ ++
  CDO69217.1  1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQETQGHSV-ESQKLIYSGKVLPDSKSVESCEIKEKDFLVLM 70
                89************************************.***************************98665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.9
                 HHHHHHHHHHT----TT-EEEETT CS
   Rad60-SLD  25 kLieayrkkkgipeeqkvrLiFDG 48 
                 ++++a+r   + pe   v+ +F+G
  CDO69217.1 166 QVMRALRASFNNPE-RAVEYLFNG 188
                 67777777777777.888888887 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.2e-06    0.0017      22      76 ..      19      66 ..       2      93 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
                 TT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTT CS
  Rad60-SLD_2 22 daatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgev 76
                  ++tva+lk+k+ +        + +sv++ kli++Gk+L ++k +++++++  ++
   CDO69217.1 19 GSDTVADLKKKIQE-------TQGHSVESQKLIYSGKVLPDSKSVESCEIKEKDF 66
                 35566666666643.......366788889******************9887776 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.6e-06    0.0036      18      64 ..      15      59 ..       5     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.6e-06
     DUF2407 18 ipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslass 64
                i+   + tva Lk+ i e   ++++s+  +LIy+G++L d++s++s 
  CDO69217.1 15 IDAEGSDTVADLKKKIQETQGHSVESQ--KLIYSGKVLPDSKSVESC 59
                6666678***********997777777..68************9874 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00039      0.53      12      31 ..     153     172 ..     151     173 .. 0.89
   2 ?    4.7   0.0     0.019        26      10      29 ..     353     372 ..     351     374 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00039
                 HHHHHHHHT--HHHHHHHHH CS
       UBA_3  12 lVdefvsqGFekdkvievLk 31 
                  ++++  +GFe+++v  +L+
  CDO69217.1 153 TIQNMIEMGFEREQVMRALR 172
                 5788999************8 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.019
                 HHHHHHHHHHT--HHHHHHH CS
       UBA_3  10 rdlVdefvsqGFekdkviev 29 
                 r +++ +++ GF +  vie+
  CDO69217.1 353 RAAIERLEALGFPRHVVIEA 372
                 6789***************8 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   5.1e-06     0.007       5      60 ..       2      61 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
                 EEEETTSS.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEE....E.-SSSSEEECS CS
  Ubiquitin_2  5 eitssltkavsserrfsksltieelKekLelitGtspasmrLql....yddkkdnevskl 60
                 +it + ++++++++  + s+t+++lK+k++   G s++s++L +     +d+k+ e +++
   CDO69217.1  2 KITVKTLQQKVFQIDAEGSDTVADLKKKIQETQGHSVESQKLIYsgkvLPDSKSVESCEI 61
                 588899999999999***************************985554556666666666 PP

>> WIYLD  Ubiquitin-binding WIYLD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.002       2.7       9      30 ..     151     172 ..     147     174 .. 0.88
   2 !    5.7   0.0    0.0091        13       8      25 ..     352     369 ..     348     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       WIYLD   9 daAidamkelGfskeqvrpvlk 30 
                 +a i+ m e+Gf++eqv++ l+
  CDO69217.1 151 QATIQNMIEMGFEREQVMRALR 172
                 67899************99886 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0091
       WIYLD   8 idaAidamkelGfskeqv 25 
                  +aAi+++++lGf+++ v
  CDO69217.1 352 ERAAIERLEALGFPRHVV 369
                 579***********9987 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.4e-05      0.13      15      41 ..     162     188 ..     161     188 .. 0.95
   2 ?   -2.4   0.0       2.9   4.1e+03       2      11 ..     281     290 ..     280     290 .. 0.83
   3 ?   -1.1   0.0       1.2   1.6e+03       7      17 ..     311     321 ..     310     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-05
                 S-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE  15 ldeevIravLrasngnvEatinaLLeg 41 
                 +++e++ ++Lras +n E+++++L++g
  CDO69217.1 162 FEREQVMRALRASFNNPERAVEYLFNG 188
                 789*********************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                 HHHHHHHHHH CS
         CUE   2 eqmletLkem 11 
                 + ++++L+e+
  CDO69217.1 281 HPQIQHLREI 290
                 789****996 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.2
                 HHHHHSTTS-H CS
         CUE   7 tLkemFPdlde 17 
                 +L +mF +++e
  CDO69217.1 311 QLAQMFAQHPE 321
                 899***99987 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   4.8e-05     0.066       1      36 [.       1      36 [.       1      45 [. 0.88
   2 ?   -2.5   0.0         4   5.5e+03      61      82 ..      46      66 ..      42      68 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaierkvel 36
                 +k+tvk l+++++++  + + tv+dLkk i+++  +
   CDO69217.1  1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQETQGH 36
                 89****************************998655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4
  Ubiquitin_4 61 egekLkddkaklkeygirnkse 82
                  g k++ d+++++++ i++k+ 
   CDO69217.1 46 SG-KVLPDSKSVESCEIKEKDF 66
                 44.5667889999999999875 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   5.2e-05     0.072      43      94 ..      22      72 ..       4      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.2e-05
  Ubiquitin_5 43 tgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskvmvLkls 94
                 t+ +l +ki e+ g   +s Kli++gk l  +k+ e   +k++   +vL +s
   CDO69217.1 22 TVADLKKKIQETQGHSVESQKLIYSGKVLPDSKSVESCEIKEK-DFLVLMVS 72
                 67899***********9***********************976.46666665 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.8     0.012        16      61     110 ..      76     125 ..      52     151 .. 0.53
   2 ?   11.3   9.3   0.00029       0.4      33     149 ..     161     279 ..     159     282 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.012
     Pex14_N  61 saseqa.qeesasssatpqpqaasqtsqsspspsppaqqqqqqyrpPivty 110
                 ++ ++a +++ +s+ +t++p+a+  +++++p+++p++++++q++  Pi t 
  CDO69217.1  76 PTPAAAaSTSATSAVSTAPPAAP-APAAETPAAAPTPAAAPQPPNAPILTP 125
                 22222213333344444444444.444444555444555555555677663 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00029
     Pex14_N  33 GLtqeEIeeaLkraereeease.......sa..vaassaseqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppp 122
                 G + e++ +aL+ + +++e+++       +a     ++++++a + +  ++a+p +q+a+ +     +++p++++q+ q+ +P++ ++  ++++++++p
  CDO69217.1 161 GFEREQVMRALRASFNNPERAVeylfngiPAhlD--QPEAPAAPAGQGAPAAQPAAQPAAAP-----AAAPAPAAQPVQPAQPQNLFQLAQQQQQQQQP 252
                 6678889999999888888777565544422221..11111112222222222222222222.....22223333344445788888777777777677 PP

     Pex14_N 123 pPlrtwrdllitatalaglgaglygls 149
                     ++ +l   a+a + ++a+l++l+
  CDO69217.1 253 AAAPNLGGLGAGAGAGGHSAATLAALA 279
                 777788888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 2498.60
//
Query:       CDO69218.1  [L=332]
Description: hypothetical protein BN946_scf185042.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.6   0.0    4.2e-09   36.4   0.0    1.7  1  HNH_2     HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.3e-13   4.2e-09       1      71 [.     134     230 ..     134     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.3e-13
       HNH_2   1 Cvitgiddp.................slleaAHIiPwslssffnd.....l........ilnrfeigrillekgstidspsNgllLspdiHklFdqflf 69 
                 Cvi+g  dp                 +++ +AHIiP+sl + +       +        +++         + +++i+s +N+++Ls+++H++F   + 
  CDO69218.1 134 CVISGKLDPesiadgpsafstpshglEVTRVAHIIPFSLRDSSGAasdhlPsiwtalecFGGTD----LGALMHGGINSLDNVITLSATVHRYFTELQV 228
                 9****666667777789999999886688***********888888876615666344433333....667889********************99988 PP

       HNH_2  70 af 71 
                 a+
  CDO69218.1 229 AL 230
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2448.78
//
Query:       CDO69219.1  [L=143]
Description: hypothetical protein BN946_scf185042.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0068   16.4   0.1      0.011   15.7   0.1    1.3  1  IGF2_C    Insulin-like growth factor II E-peptide
  ------ inclusion threshold ------
      0.083   13.1   0.1       0.13   12.5   0.1    1.3  1  TfoX_N    TfoX N-terminal domain


Domain annotation for each model (and alignments):
>> IGF2_C  Insulin-like growth factor II E-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.2e-06     0.011      21      52 ..      51      82 ..      40      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-06
      IGF2_C 21 PaiLrarrfrlqaekleaseeakrHrpLisLp 52
                 ++L+ r+ r+ a+ ++++ +a++H+  +++ 
  CDO69219.1 51 GNVLKLRKERMAARTAQQQLQAEAHHHQVTMD 82
                599*********************99877765 PP

>> TfoX_N  TfoX N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.4e-05      0.13      43      89 ..      66     117 ..      54     119 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHTT--.--EEE....ETTEEEE-SEEE--HHHHC-HHHHHHHHHHH CS
      TfoX_N  43 treefeaagle.pftya....kkgtpktlsYyrvpeelledpeqlarwvrla 89 
                  +++++a+ ++ + t++    k+   + ++Y+r p++++e   ql+  vr +
  CDO69219.1  66 AQQQLQAEAHHhQVTMDsaelKRLHANMMKYFRPPDDIFERLMQLSGAVRDS 117
                 34455555555577777656666555555***************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1126.11
//
Query:       CDO69220.1  [L=756]
Description: hypothetical protein BN946_scf185042.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4959.19
//
Query:       CDO69221.1  [L=666]
Description: hypothetical protein BN946_scf185042.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-46  156.5   0.0    1.3e-45  155.1   0.0    1.8  1  IMS              impB/mucB/samB family
    6.2e-11   43.0   1.4    1.4e-10   41.9   0.1    2.3  3  IMS_C            impB/mucB/samB family C-terminal domain
      5e-07   29.7   0.0    1.1e-06   28.6   0.0    1.6  1  IMS_HHH          IMS family HHH motif
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.027   14.1   0.0    1.7  1  RNF220           E3 ubiquitin-protein ligase RNF220
      0.022   15.0   0.4      0.047   13.9   0.4    1.5  1  RelB_transactiv  RelB transactivation domain


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1   0.0   3.5e-49   1.3e-45       1     150 []     113     256 ..     113     256 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 3.5e-49
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 +DmdaF+asve +++peL +kP++v+qg     ++ ++sy Ar+yGv++gm+ + ak+lcpdliv+++++++y ++s+k+++i++r+ +p++  a++DE
  CDO69221.1 113 VDMDAFFASVEVLANPELASKPFAVGQG-----VISTASYDARKYGVRSGMATFVAKRLCPDLIVLPSHFDRYSEMSSKVMTIFRRY-DPTMCVAGCDE 205
                 7**************************8.....******************************************************.99********* PP

                 EEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS 100 ayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                  yl++t++  ++  + ++ ++++r+ ++ee++ltvs+Gia+nk+lAK+ s+
  CDO69221.1 206 GYLNITRYCLEHSLSPEECVSQMRQIVYEETNLTVSAGIAPNKMLAKICSD 256
                 *******555555555********************************985 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.3   1.6e+04      30      40 ..      89      99 ..      58     112 .. 0.52
   2 ?   -3.0   0.0       3.1   1.1e+04      35      58 ..     160     195 ..     143     227 .. 0.62
   3 !   41.9   0.1     4e-14   1.4e-10       5     113 ..     361     456 ..     359     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.3
       IMS_C 30 lreLaeelarr 40
                ++e +++l+++
  CDO69221.1 89 VEERVDKLIAQ 99
                12333333333 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
       IMS_C  35 eelarrL............rdkglvartitlklrys 58 
                 + +a+rL            r  ++  + +t++ ry+
  CDO69221.1 160 TFVAKRLcpdlivlpshfdRYSEMSSKVMTIFRRYD 195
                 555555544445544444444445556666666666 PP

  == domain 3  score: 41.9 bits;  conditional E-value: 4e-14
       IMS_C   5 rpepksissektfpepydesklkkelreLaeelarrLrdkglvartitlklrysdfhasrsatLprpt.sdtreileaalkLlrrlidepglpirligv 102
                 r+e+ksi++e+tf    d +k+ + l+e a+el  +++++g +++t+tlk+           +L+++     +++++  ++Ll       +l +rlig+
  CDO69221.1 361 REERKSIGAERTFNALSDTDKIYAKLEEVAAELEHDMVEEGWTGKTVTLKY-----------KLDTWIsTKKEDLFAIGQELL--KPE-LPLTLRLIGL 445
                 89************9777767999***************************...........5999555999***********..444.89******** PP

       IMS_C 103 sasnlvekaes 113
                 ++++l + +++
  CDO69221.1 446 RVTKLKDLRAE 456
                 *****977665 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.1e-10   1.1e-06       1      32 []     270     301 ..     270     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.1e-10
     IMS_HHH   1 pddvkefLwplpitkipGiGgklgekLeklGi 32 
                 p+++k+f+++l+i+k+pG+G++ +  Le++Gi
  CDO69221.1 270 PEAIKAFMHDLSIRKVPGVGRVNERLLESIGI 301
                 799***************************98 PP

>> RNF220  E3 ubiquitin-protein ligase RNF220
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.7e-06     0.027     110     135 ..     587     617 ..     536     638 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.7e-06
      RNF220 110 vcpvCnkkvl...eeltlhveaclrkse..s 135
                  cp+C++ +    + l++hv+ cl k+   +
  CDO69221.1 587 ECPICSRLLEtdnDGLNAHVDFCLSKQAikE 617
                 6******88888889***********98431 PP

>> RelB_transactiv  RelB transactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   1.3e-05     0.047      63     144 ..     502     586 ..     476     592 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
  RelB_transactiv  63 dfllspvslpgleppggpdllddglayeqtapalftmldl.....lspppplasavsgagaagetvgepsgpelltldsyaapasad 144
                      d +   vs+pg+e   + ++ ddg+  ++t+++l +         +s +p  +sa + + ++g+ + +  +   +t d  +a++sa 
       CDO69221.1 502 DGFA--VSMPGFEEDVAAEVADDGVDLDSTSESLASRHSAakpksFSFTPLRSSAQAASSSKGHPPPNSASSSRVTEDGSEASSSAL 586
                      4444..9**************************987655411111555555567777888889999999999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4242.21
//
Query:       CDO69222.1  [L=380]
Description: hypothetical protein BN946_scf185042.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-12   45.6   2.0    6.4e-12   45.0   2.0    1.3  1  zf-U1      U1 zinc finger


Domain annotation for each model (and alignments):
>> zf-U1  U1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   2.0   3.5e-16   6.4e-12       2      37 ..       9      43 ..       8      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.5e-16
                XSEEETTTTEEESS-SHHHHHHHHTSHHHHHHHHHH CS
       zf-U1  2 pkYyCdYCdiyLthDspsvRksHngGrkHkenvkdy 37
                +kY+C+YC+iy+++D p +R++H++G  Hk nv+++
  CDO69222.1  9 KKYFCKYCNIYIADDAP-SRRQHESGLRHKGNVERF 43
                7***************6.58************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2700.57
//
Query:       CDO69223.1  [L=579]
Description: hypothetical protein BN946_scf185042.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.6   0.0        3.2    7.8   0.0    2.3  2  DUF1877   Domain of unknown function (DUF1877)


Domain annotation for each model (and alignments):
>> DUF1877  Domain of unknown function (DUF1877)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00018       3.2      43     124 ..     162     252 ..     114     283 .. 0.78
   2 ?    4.3   0.0    0.0021        37      72     103 ..     387     417 ..     371     434 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00018
     DUF1877  43 e...dlDKaWdaLhflltgds.....egenplsevvlGgeelgeedegygparlltpeqVkevaeaLae.ldfeelrerfdaeeleeaeiY 124
                     +l+K W aL  l +++s       + p s   lG  ++   ++    + l t++ V +v++  ++ l+ ++ re fd ++ +e+++ 
  CDO69223.1 162 AagvNLNKIWAALAALRENSSvvlpdPLPRPASITRLGTSSVALAQDASHSIVLYTAQLVPAVSALTDRmLQTKMVREDFDRAAAQEKDLS 252
                 13459*************999*9987557788888899999988667777788899999999998887526889999*****999999875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0021
     DUF1877  72 GgeelgeedegygparlltpeqVkevaeaLae 103
                 G e+ ++++e++g+  +++p +V++++e+La+
  CDO69223.1 387 G-EDAEDDEESEGWWGFWEPTEVAKLSEWLAA 417
                 4.4555699*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3944.22
//
Query:       CDO69224.1  [L=292]
Description: hypothetical protein BN946_scf185042.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      0.007   16.1   0.0      0.011   15.4   0.0    1.3  1  UPF0020      Putative RNA methylase family UPF0020
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.039   13.7   0.0    1.4  1  N6_N4_Mtase  DNA methylase


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-06     0.011       3      43 ..     191     231 ..     190     273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-06
                 SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHH CS
     UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtil 43 
                 +R++ g++++ ++++  + + + + pg+  +DP+ G+G+++
  CDO69224.1 191 KRVYYGNTSMEAEMSLLMANQTLAAPGKLVYDPFAGTGSMA 231
                 799***********************************986 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-06     0.039     187     212 ..     212     237 ..     148     271 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-06
                  HHS-TT-EEEETT-TTTHHHHHHHHT CS
  N6_N4_Mtase 187 lstkkgdivlDpFaGSGtTavaakel 212
                   +  +g++v DpFaG+G+ a +++e 
   CDO69224.1 212 TLAAPGKLVYDPFAGTGSMAYVCNEN 237
                  34568*****************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1925.31
//
Query:       CDO69225.1  [L=902]
Description: hypothetical protein BN946_scf185042.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-17   63.4   0.0    5.8e-17   62.5   0.0    1.4  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   3.2e-21   5.8e-17      46     167 ..     767     901 ..     729     902 .] 0.80

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 3.2e-21
  2OG-FeII_Oxy_2  46 gplgwatdgpgyrysekesvdakplspfpeallrlverlvkaag......pegwspnaalvnfYrdgariglHqDkeesaleapivSlSLGasat 134
                     + ++   +g++y+y +    +  p++++p+a++++ + +  +         e+  +n++l   Y+++++++ H+D e   l++ ++SlSLG++a+
      CDO69225.1 767 NYFS-QNTGEPYQYVGG-TANTVPFDDAPSAVVHARKLIQDRMVnvmqaeKEQCVFNEVLSAAYMEKQKMAFHSDAERG-LGPRVASLSLGSAAY 858
                     2333.335899***998.89**********999999888776558999999999***********************77.*************** PP

  2OG-FeII_Oxy_2 135 frfg..kesree.......eiiailLesGdllvmgges.rkay 167
                     + f+  k+ r++       +  ++lL++Gd+++m+g+  +++y
      CDO69225.1 859 MHFRllKKYRTDkgsgsnvNALTLLLRHGDVVIMDGAEiQEYY 901
                     ***977444444577788899****************978887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5957.38
//
Query:       CDO69226.1  [L=528]
Description: Glycoside Hydrolase Family 79 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-13   51.9   0.6    2.6e-13   50.7   0.6    1.6  1  Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta


Domain annotation for each model (and alignments):
>> Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.6   1.4e-17   2.6e-13       2     103 .]     420     524 ..     419     524 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.4e-17
  Glyco_hydro_79C   2 Yavy....esgklarvvliNleaynststg....rpsvtvtlsglseggksvkvkrLtapgvdadan..itwaGqsfnnksdeldggeeeetvv 85 
                      Ya++     ++ +ar++++ +   n+t++g       vt++ls + ++gk+v++kr++apg d+++   +twaGqs++n+++       ee+v+
       CDO69226.1 420 YAIWdpavRTSGVARLAVLYVAVRNETTSGedpaGMAVTLDLSPYVQKGKQVTAKRMQAPGLDSKDStrVTWAGQSYANGTAA-----GEEVVE 508
                      8888654445899***********999999999889999999999999************966666568*********96666.....589999 PP

  Glyco_hydro_79C  86 vvsdGkvtvdVpaseavL 103
                      + +dGk  ++V  se vL
       CDO69226.1 509 KLKDGK--ITVGGSEGVL 524
                      9999*8..9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4080.41
//
Query:       CDO69227.1  [L=177]
Description: hypothetical protein BN946_scf185042.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-25   89.2   1.0    2.4e-25   88.9   1.0    1.1  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   1.0   1.4e-29   2.4e-25       2     121 .]      55     174 ..      54     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.4e-29
     Sdh_cyt   2 rknrplsphlqlyrlplgawlsilhritGvallvglllllvwlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllwDlglglel 100
                 r +rp sph+++y+++l+++ si+ ritG++l v+l+   +++l+a+   ++    ++va+l+  +k +  ++l+++++yH lnG+Rhl wD+g++l+l
  CDO69227.1  55 RLRRPSSPHFTIYQPQLTWIGSIANRITGAGLSVLLYGYALAYLVAPGTFDSTHVVEFVAGLPEAVKYAGKAILAAPFAYHSLNGLRHLGWDMGKFLTL 153
                 679*******************************7777777778888666666666669999999999999************************9*** PP

     Sdh_cyt 101 esarksalavlalavalvlvl 121
                 + a++s++avla++++++++l
  CDO69227.1 154 RGAYASGYAVLAGTAISTVIL 174
                 ****************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1255.05
//
Query:       CDO69228.1  [L=1110]
Description: hypothetical protein BN946_scf185042.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-17   62.1   0.1      9e-17   60.8   0.1    1.7  1  ATP-synt_DE_N    ATP synthase, Delta/Epsilon chain, beta-sand
     0.0014   18.8   0.4     0.0014   18.8   0.4    2.7  2  Cob_adeno_trans  Cobalamin adenosyltransferase
  ------ inclusion threshold ------
        1.1    9.1   8.0        1.1    9.1   0.2    3.4  4  PhaP_Bmeg        Polyhydroxyalkanoic acid inclusion protein (


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   1.5e-20     9e-17       2      79 ..     980    1059 ..     979    1060 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.5e-20
                     EEEEEESSSEEEEEE.EEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEEGGGEEEEEEESSEEEEEE.TTEEEEEESS CS
  ATP-synt_DE_N    2 kleivtpervvfsge.veevvaptteGelgilpgHaplitaLkpgelriktedgeeesiavsgGflevq.dnkvtiladt 79  
                     kl++v p + +f    v +v + +++G++gil++Hap+i +L+pg++++ +++++ ++ +vsgGf+ v  +nk+ti a +
     CDO69228.1  980 KLSLVLPHQAIFTSAdVVQVNLAAATGDMGILANHAPTIEPLRPGVVEVIETGHQSKKWFVSGGFATVHpNNKLTINAVE 1059
                     8999***999998777**********************************99999**************77999998866 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   2.3e-07    0.0014      14     157 ..     568     717 ..     559     722 .. 0.84
   2 ?   -0.1   2.7      0.15   9.1e+02      78     139 ..     907     970 ..     811     984 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-07
                      XXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTT...........THHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--.HHHHHHHHHHH CS
  Cob_adeno_trans  14 vggervsKddprveayGtvDelnsaiglarallaee...........eeelkeaLeeiqneLfdlgaelatpekkkekkkit.eeeveelekei 95 
                      ++g+ v+ + ++v++  +vDe+   +  +ra+  +e           +++lk +L+++q+ L  l +++at  +     +++  ++ +el +++
       CDO69228.1 568 LKGRSVTDSTNIVNIRTKVDEVLTEVRCLRAQGMDEprildgkldevQADLKGDLSKLQSLLEGLRSSIATAGQP-G--SVSaMQDATELHAKL 658
                      578899999*********************8766669*******99999999******************87333.2..3333444799***** PP

                      HHHHHHS--EESEEES-SSHHHHHHHHHHHHHHHHHHHHHHHHHHS.HHHHHHHHHHHHHHH CS
  Cob_adeno_trans  96 deleaelpplksfilpggspaaaalhvaRtvcRraERavvelaeeeveeevlkylNRLSDlL 157
                      d+l     + +     gg+ +  +l  + ++   aE + v+ +e+  +++ ++ylN L  +L
       CDO69228.1 659 DSLLRL-CQTRGEAPAGGHISETQLAEVVSLLKDAEEQRVTQMEQ--QTDSIRYLNELNTWL 717
                      *99875.557888889999999*************9999888775..5899*****997766 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
                      CCG-S--HHHHHHHHHHHHHHHHHS-...-EESEEES-SSHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  78 kekkkiteeeveelekeideleaelp...plksfilpggspaaaalhvaRtvcRraERavvelae 139
                      k++ k+++  v+ l  ++  +  + +      s    + +++++al ++ + +Rra R+++ l++
       CDO69228.1 907 KKAGKVSKP-VDGLTPAFSVVGRTANaksSSPSRSSRSATKVMSALRLVTAAARRAPRNFALLRR 970
                      333333333.4444444443333332111233344555678889999999999999998887755 PP

>> PhaP_Bmeg  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.36   2.1e+03      67     104 ..     557     593 ..     546     598 .. 0.79
   2 ?    9.1   0.2   0.00019       1.1      21      87 ..     682     747 ..     678     772 .. 0.87
   3 ?    0.9   0.9     0.064   3.9e+02      26     101 ..     799     876 ..     794     886 .. 0.71
   4 ?    1.4   0.1     0.043   2.6e+02      48     115 ..     877     941 ..     857     949 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
   PhaP_Bmeg  67 ledqlqktvenlrskaGnkvednieEwtdkleevsakl 104
                 ++d+ q+ ve l +   + +  ni     k++ev++ +
  CDO69228.1 557 ILDNIQSNVEAL-KGRSVTDSTNIVNIRTKVDEVLTEV 593
                 789999999999.5556667788999999999998865 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00019
   PhaP_Bmeg  21 lerfaslskqvEqltLkalkqqqdlvkeltkalselekeskqltaeledqlqktvenlrskaGnkve 87 
                 l ++ sl k+ E++    ++qq d ++ l +    le+  k+ ta++ +    +v++l ++ G   e
  CDO69228.1 682 LAEVVSLLKDAEEQRVTQMEQQTDSIRYLNELNTWLEAFVKHGTAQI-EGVAAGVQQLCKDLGPVEE 747
                 66778899******************999999999************.556889****999997644 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.064
   PhaP_Bmeg  26 slskqvEqltLkalkqqqdlvkeltkalseleke.skqltaeledqlqktvenlrskaGnkvednieEwtdkl.eevs 101
                 +l+++ E   L + + +  l+ + ++  +++ k    +lt e+ ++    ve +r  +  +v+  +eE++  l +ev 
  CDO69228.1 799 DLQRNAEARNLLTTESVTGLIDRQRQDQERMLKSlATELTNEIRGERLRFVEAMRDATAINVQIHVEEFKKELtREVM 876
                 567777888888888888888877777777555415788888888888888888888888888888888755414555 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.043
   PhaP_Bmeg  48 eltkalselekeskqltaeledqlqktvenlrskaGnkvednieEwtdkleevsakleklalspsKss 115
                  +t+++ +l++e + l+ ++ d++  + ++   kaG  v   ++ +t  +  v+   +  + sps+ss
  CDO69228.1 877 IMTQEVTRLQRERQGLEQQIADLFAFYAKQK--KAGK-VSKPVDGLTPAFSVVGRTANAKSSSPSRSS 941
                 479999**************99998887765..5554.466666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 7660.70
//
Query:       CDO69229.1  [L=201]
Description: hypothetical protein BN946_scf185042.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-31  107.1   0.1    8.4e-31  106.6   0.1    1.2  1  Pyrid_ox_like   Pyridoxamine 5'-phosphate oxidase like
    7.8e-11   42.0   0.0    2.5e-10   40.4   0.0    1.7  2  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.1   9.4e-35   8.4e-31       1     147 [.      22     178 ..      22     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 9.4e-35
  Pyrid_ox_like   1 eavkklkelvkdiktamLttteadgklksrPMatqk..veedgdlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvsvsGtaevvedrakieel 94 
                    e+++ l+++vk++kt+mLtt++a+g+l++r Ma +   + ++ +l f++++ s k +ei++d +vn+ f des ++++s +G a++ +d++ki ++
     CDO69229.1  22 EKIEGLHSIVKNVKTGMLTTRSASGQLHARAMAPAGpvDPNQVTLVFIANRASAKFDEIEHDAHVNVSFYDESTTNWASYAGIAKIIQDKNKIAKH 117
                    678899***************************98733567889**************************************************** PP

  Pyrid_ox_like  95 Wspvvkawf........pegkddpnltlikvtpeeaeyWdsksgklvsllkmakaavtgkk 147
                    Ws++ +awf        +  ++dp++ +i+v p+e +yW ++ gk+  ++ +a  avtg++
     CDO69229.1 118 WSSATAAWFgdlgdgvhKGDQNDPRVAVIEVIPDEIRYWYATRGKVGQAVDVAVGAVTGRT 178
                    *********4443333222478************************************976 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   2.8e-14   2.5e-10       7      87 ..      29     111 ..      23     112 .. 0.90
   2 ?   -1.5   0.0      0.32   2.9e+03      57      69 ..     138     150 ..     130     165 .. 0.62

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.8e-14
                     HHHHHSSEEEEEEEETTSEEEEEEEEEEEETTT...TEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCH CS
  Putative_PNPOx   7 eflaeskavvlATvdedGrPnvspvllkagdgr...dgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdg 87 
                     +++++ k+++l+T +++G+ +++++  + g+ +    ++vf+ n+ s+k+ ++e++ +v+++f+d+++ ++ ++ G a++++d+
      CDO69229.1  29 SIVKNVKTGMLTTRSASGQLHARAMAPA-GPVDpnqVTLVFIANRASAKFDEIEHDAHVNVSFYDESTTNWASYAGIAKIIQDK 111
                     678999*******************955.44444569*******************************************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
                     HHH-EEEEEEEET CS
  Putative_PNPOx  57 eenprvallfldd 69 
                     +++prva+  + +
      CDO69229.1 138 QNDPRVAVIEVIP 150
                     6778877654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1486.10
//
Query:       CDO69230.1  [L=81]
Description: hypothetical protein BN946_scf185042.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-22   77.2  11.9    1.5e-21   76.6   9.5    1.9  2  HSP9_HSP12  Heat shock protein 9/12


Domain annotation for each model (and alignments):
>> HSP9_HSP12  Heat shock protein 9/12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   9.5   8.2e-26   1.5e-21       1      59 []       1      57 [.       1      57 [. 0.98
   2 ?    1.0   0.0     0.032   5.7e+02      21      32 ..      65      76 ..      62      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 8.2e-26
                ---S-SSCHHHHHHHHCS--SSHCHHHHHHHHHHHHHHHHHHCS-TTCHHCCHHCCCGG CS
  HSP9_HSP12  1 MSDagRkdftdkakeevtPDsqKStlekaketvtdaaDklarklqpddqKsttQevsDk 59
                M DagR++ftdka+++++PDsqKS++e+++++v+++aD+la+++qp  qKst+Q+v+D+
  CDO69230.1  1 MADAGRQSFTDKASSAMKPDSQKSMTEQVGDSVKGTADSLASTMQP--QKSTSQQVGDS 57
                9*********************************************..7*********5 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.032
                SSHCHHHHHHHH CS
  HSP9_HSP12 21 sqKStlekaket 32
                +q S+++kak+ 
  CDO69230.1 65 NQGSMMDKAKDM 76
                577899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 587.57
//
Query:       CDO69231.1  [L=526]
Description: hypothetical protein BN946_scf185042.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3815.51
//
Query:       CDO69232.1  [L=320]
Description: hypothetical protein BN946_scf185042.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-24   86.9   0.1    1.5e-24   86.5   0.1    1.2  1  Lipase_3       Lipase (class 3)
      0.008   15.7   0.0      0.011   15.3   0.0    1.1  1  DUF676         Putative serine esterase (DUF676)
  ------ inclusion threshold ------
      0.013   16.1   0.1      0.023   15.3   0.1    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   2.5e-28   1.5e-24       1     140 [.     109     250 ..     109     252 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2.5e-28
                 EEEE----..------------EEE-HHHH-G...TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS- CS
    Lipase_3   1 vvafRGte..sakdwltdldfslteakellek...eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenek 94 
                 vva +Gt+  ++ ++++d++f ++ a+++l     +++k+h+gf    +  +++ v +++++ le+    ++ vtGHSLG+a+A+L a++l++   +++
  CDO69232.1 109 VVAHQGTDphKILSIANDIEFGQVAANKTLFPqtnSSVKLHEGFQATHG-RTADLVMSTVQSGLESTGFKRVLVTGHSLGAAVASLDAAMLRMAL-SDD 205
                 78999**99999***********9999987667899***********99.*****************************************9998.559 PP

                 --EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3  95 kkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                  +v+ v+fG Prvgn++ a+l+ds +++ + +v+n++D+vP +pp 
  CDO69232.1 206 VQVQSVVFGLPRVGNQAWADLFDSLIPD-FAHVTNQKDPVPAVPPH 250
                 ****************************.***************85 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06     0.011      41     101 ..     137     199 ..     109     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
      DUF676  41 eflmsennesktfkgidvlgerlaeevlevvkkkkdk..nkkiSfvghSlGgliaraaiaklk 101
                  +  ++n++ k ++g++    r+a+ v+++v++  ++   k++ + ghSlG  +a+   a l+
  CDO69232.1 137 TLFPQTNSSVKLHEGFQATHGRTADLVMSTVQSGLEStgFKRVLVTGHSLGAAVASLDAAMLR 199
                 556778899999*********************98887889***********99987655555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   3.8e-06     0.023      54      93 ..     165     214 ..     129     273 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
                    HHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC..........EE.EEE CS
  Abhydrolase_6  54 aalldelaa.gggpvvlvGHSlGGalalaaapla........lvvg.vll 93 
                    + +  +l + g ++v + GHSlG+a+a++ a+ +        +v + v+ 
     CDO69232.1 165 STVQSGLEStGFKRVLVTGHSLGAAVASLDAAMLrmalsddvQVQSvVFG 214
                    34444444477899***************333333444443322221222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2219.99
//
Query:       CDO69233.1  [L=451]
Description: hypothetical protein BN946_scf185042.g135 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.8e-119  397.1   0.0   8.4e-119  396.8   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
    4.9e-07   29.2   0.0      6e-07   29.0   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
     0.0041   16.4   0.0     0.0061   15.9   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
        0.1   12.7   0.2       0.23   11.5   0.2    1.5  1  zf-ANAPC11       Anaphase-promoting complex subunit 11 RING-H


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.8   0.0  1.9e-122  8.4e-119      11     405 ..      29     443 ..      21     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 396.8 bits;  conditional E-value: 1.9e-122
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-...SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapk.gldkvflansGseAvetAlKla 107
                  +vitkaeG+y+t  dg+++lD++++i v+nlGh+hPk++ka+++q ++l+h    + ++ p+l+l +kll ++p+ +ld +f+ nsGseAve+A+K+a
   CDO69233.1  29 AVITKAEGSYVTFGDGRQMLDFTCGIGVTNLGHCHPKISKAAADQCMNLVHGQCSIAFHGPYLELIQKLLPMMPHpSLDSFFFWNSGSEAVEAAIKMA 126
                  89**********************************************************************997679******************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH.....HHHHHHHHHHHHHH..CHTCCCEEEEEE CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene.....eeeaalleeleale..kkkkdevaAviv 198
                  r        t +++ii ++ga+HGrt+ga++vt+sk++y+++f+p++p+v +l++p+  +l +       + ++++l++l+ l   +++  ++aA++v
   CDO69233.1 127 RT------FTGRQNIINMQGAYHGRTFGAMAVTKSKTIYSEGFHPLMPGVFSLPFPYWHQLGVPVdtpssKMSEMCLNQLSLLLsqATAPHDTAAILV 218
                  **......***********************************************987665443333444455556666665558888999******* PP

                  -SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HH CS
  Aminotran_3 199 EpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnpl 296
                  E++ gegG+v+a+pefl++lre+c+kh+++li+DEvq+G GrTGk +A+e+ gv pD+m++aK+l++G+pls v+ ++e+ + l+pgs g+T++Gn +
   CDO69233.1 219 ETVMGEGGYVPAPPEFLKGLREICDKHGIMLIIDEVQSGYGRTGKNYAIEYSGVRPDIMITAKGLANGFPLSGVISRKELTDKLKPGSMGGTYAGNAV 316
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-...TTEEEEEEETTEEEEEEBCCCETTC..............HHHHHHHHHCTEE-EEE CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkky...evikevRgkGlmiaielkeeaevke..............keilkkakekGvlilsa 377
                  aca+a+a+ ++++ee+ l+n+++ +++l ++L++l +++     i +vRg+Glm+a+e+ +++ + +               +++k+  ekG+lil++
   CDO69233.1 317 ACAAAVAAADVMKEENILDNVNARSKELFAALNALRANPkvaPAILDVRGQGLMVAVEFASPVGTGPydafrnpsipeklaSRVAKRCVEKGLLILTT 414
                  ***********************************99984344699******************7779************999*************99 PP

                  TT.TEEEE---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 378 Gd.nvirllppliitdeeidelleilkka 405
                     +vir++p+l i++e++++++ i+ +a
   CDO69233.1 415 SVyEVIRFIPALNISKEDLAKGCRIFAEA 443
                  988**********************9987 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.3e-10     6e-07     126     295 ..     191     351 ..     116     433 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.3e-10
                    TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B-.-HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEES CS
  Aminotran_1_2 126 edfhldlealeealkeapegnkktkvilvesphNPtGtva.tleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgsl 219
                    +  ++ l++l  +l++a++    t  ilve++    G v+ ++e l+ l ++++k++++l++De+ +g   + + + a+ +++v +++  +++ +l
     CDO69233.1 191 KMSEMCLNQLSLLLSQATAPHD-TAAILVETVMGEGGYVPaPPEFLKGLREICDKHGIMLIIDEVQSGYGRTGKNY-AIeYSGVRPDIM-ITAKGL 283
                    5556666777777777766666.7888888888888888626677899**********************998754.445******999.****** PP

                    SSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS CS
  Aminotran_1_2 220 sKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael 295
                    +  f l G     +++ +++ + l+  s ++++   +++ aa++aa++       + e+  + +++r+kel+++L++l
     CDO69233.1 284 ANGFPLSG-----VISRKELTDKLKPGSMGGTYagNAVACAAAVAAADV-M----KEENILDNVNARSKELFAALNAL 351
                    ********.....99*****************96433333333333322.2....45677777777777777777766 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0061      98     167 ..     184     252 ..      67     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                      EEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase  98 lrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      ++d ++++  +m l++l  ++ +  a   ++++i++++ +   g  + ++e l+ +++i++k+gi l++D
       CDO69233.1 184 PVDTPSSKMSEMCLNQLSLLLSQATA-PHDTAAILVETVMGEGGYVPAPPEFLKGLREICDKHGIMLIID 252
                      55556666699************888.6678888888888864446799*******************99 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   5.2e-05      0.23      21      58 ..      49      88 ..      30      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.2e-05
                SSB-TTT-SBTTS--TTC.STTTTTS.-EEEBTTS-EEEH CS
  zf-ANAPC11 21 ddvcGicrvsfdGtcpsc.kfpGddc.plvlGkckhnfhl 58
                d +cGi   +   + p+  k   d+c +lv G+c+ +fh 
  CDO69233.1 49 DFTCGIGVTNLGHCHPKIsKAAADQCmNLVHGQCSIAFHG 88
                568****9999999999637899***669*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3204.62
//
Query:       CDO69234.1  [L=79]
Description: hypothetical protein BN946_scf185042.g136 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        0.1   12.2   0.1        0.1   12.2   0.1    1.1  1  Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.7e-06       0.1     135     180 ..       2      50 ..       1      71 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.7e-06
  Reprolysin_4 135 eydi..fAHEiGHtfGaaHdlsdegeglsskt.eegsgqtIMsyaseas 180
                   ey+i  +A E G   G+  +l +  + +++++ ++++++ IM    ++s
    CDO69234.1   2 EYNIftLAQEKGAVAGLLYSLHSVTCTINEEYsDPANFNQIMDIFATKS 50 
                   577766899***************99999998799*******8766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 624.02
//
Query:       CDO69235.1  [L=465]
Description: hypothetical protein BN946_scf185042.g137 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-13   48.5   5.8    1.3e-12   47.8   5.8    1.4  1  zf-RING_2     Ring finger domain
    1.9e-07   30.7   5.7      3e-07   30.1   2.5    2.2  2  zf-RING_11    RING-like zinc finger
    8.5e-07   28.7   4.4    1.4e-06   28.0   4.4    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    2.3e-06   27.6   1.7    4.4e-06   26.7   1.7    1.4  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
    2.7e-06   27.1   3.4    4.6e-06   26.3   3.4    1.4  1  zf-RING_4     RING/Ubox like zinc-binding domain
    3.1e-05   23.7   2.5    5.3e-05   23.0   2.5    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    3.6e-05   24.0   6.2    0.00011   22.4   6.2    1.8  1  zf-rbx1       RING-H2 zinc finger domain
    0.00013   21.8   1.5    0.00022   21.0   1.5    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00034   20.6   2.6      0.037   14.1   1.0    2.5  2  zf-RING_UBOX  RING-type zinc-finger
    0.00034   20.5   2.2    0.00055   19.8   2.2    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0013   18.5   6.6      0.013   15.4   7.3    2.0  2  Prok-RING_4   Prokaryotic RING finger family 4
     0.0069   16.5   2.5      0.017   15.3   2.5    1.7  1  FANCL_C       FANCL C-terminal domain
  ------ inclusion threshold ------
      0.013   15.6   3.4      0.024   14.7   3.4    1.4  1  RINGv         RING-variant domain
      0.023   14.6   4.9       0.24   11.4   1.9    2.3  2  Prok-RING_1   Prokaryotic RING finger family 1
       0.65    9.7   2.5        1.3    8.7   2.5    1.5  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        4.5    7.3   6.8        7.3    6.6   0.5    2.8  3  UBZ_FAAP20    Ubiquitin-binding zinc-finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   5.8   1.2e-15   1.3e-12       2      44 .]     344     389 ..     343     389 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.2e-15
   zf-RING_2   2 eCpICleelssadsvlllpCg.Hv.fhreClerw.lrssstCPlCr 44 
                 +CpIC  +++++d++++lpC  H+ fhr+C+++w l+ ss+CP+Cr
  CDO69235.1 344 TCPICIVDFEEGDDLRVLPCEgHHrFHRDCVDQWlLELSSSCPICR 389
                 7*******************55888*********6666666****9 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   2.5   2.7e-10     3e-07       2      29 .]     345     374 ..     344     374 .. 0.98
   2 ?    1.5   0.1      0.23   2.6e+02       2      16 ..     385     399 ..     384     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.7e-10
  zf-RING_11   2 CsICLeefkpgqalfilpCs..HtFHfkCI 29 
                 C IC+ +f++g+ l++lpC   H FH +C+
  CDO69235.1 345 CPICIVDFEEGDDLRVLPCEghHRFHRDCV 374
                 *******************999*******7 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.23
  zf-RING_11   2 CsICLeefkpgqalf 16 
                 C IC ++f   q+++
  CDO69235.1 385 CPICRQDFHALQTMM 399
                 ******998877766 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   4.4   1.2e-09   1.4e-06       2      40 .]     345     388 ..     344     388 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.2e-09
  zf-C3HC4_2   2 CpiCldmlkdpsvvt..pCg..HvfCqkCilrs.LeekneCPlC 40 
                 CpiC+  ++++ ++   pC+  H+f+++C++++ Le +++CP+C
  CDO69235.1 345 CPICIVDFEEGDDLRvlPCEghHRFHRDCVDQWlLELSSSCPIC 388
                 *********997665669*555**********6156677***** PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   1.7   3.9e-09   4.4e-06      34      82 ..     344     393 ..     338     396 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.9e-09
                 --TTCST...TTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB-- CS
  zf-ANAPC11  34 tcpsckf...pGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfk 82 
                 tcp c +    Gdd  ++  + +h fh  c+ +wl + +s   cp+crq f+
  CDO69235.1 344 TCPICIVdfeEGDDLRVLPCEGHHRFHRDCVDQWLLELSS--SCPICRQDFH 393
                 89999863336************************88765..7******996 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   3.4   4.1e-09   4.6e-06       1      47 [.     345     392 ..     345     393 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.1e-09
   zf-RING_4   1 cplCdeel.detdkdlkpCeCgyqiClfCyhrileeeegrCPaCreeY 47 
                 cp+C+ ++ + +d ++ pCe ++++ ++C ++ l e +  CP Cr+++
  CDO69235.1 345 CPICIVDFeEGDDLRVLPCEGHHRFHRDCVDQWLLELSSSCPICRQDF 392
                 9*******778999********************************98 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   2.5   4.7e-08   5.3e-05       1      41 []     345     388 ..     345     388 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.7e-08
                 -TTT-S--SS-E...E-TT..S--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleC..kHsfCskCirkilksrkkvkCPlC 41 
                 CpiC   ++e +  ++l+C  +H+f+++C++++l  + + +CP+C
  CDO69235.1 345 CPICIVDFEEGDdlRVLPCegHHRFHRDCVDQWLL-ELSSSCPIC 388
                 **********99999999955599***********.99999**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   6.2     1e-07   0.00011      12      55 .]     343     389 ..     339     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-07
     zf-rbx1  12 eacieckapgdee..cpvvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 e+c+ c  + +e     v   e +H FH +C+++Wl + +++CP+cr
  CDO69235.1 343 ETCPICIVDFEEGddLRVLPCEGHHRFHRDCVDQWLLElSSSCPICR 389
                 556666544444333888888889***********999899*****8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.5     2e-07   0.00022       3      47 ..     343     392 ..     341     395 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2e-07
                 SB-TTTSS...SBS-EEETTE.EEEEE-HHHHHHHHH.TT-B-TTT--B- CS
  zf-C3HC4_3   3 eeCviCle...rprnvvllpC.gHlvlCeeCaekllk.rkkkCpiCrrpi 47 
                 e+C+iC     +  +  +lpC gH  +  +C++++l   + +CpiCr++ 
  CDO69235.1 343 ETCPICIVdfeEGDDLRVLPCeGHHRFHRDCVDQWLLeLSSSCPICRQDF 392
                 689999873436888******88999********9877*********986 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.0   3.3e-05     0.037       1      26 [.     345     377 ..     345     384 .. 0.75
   2 ?    5.7   0.0     0.013        15       1       9 [.     385     393 ..     385     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.3e-05
  zf-RING_UBOX   1 CpIClelft...dPlv.lpCG..HtFCreCl..w 26 
                   CpIC  +f+   d l  lpC   H F+r+C+  w
    CDO69235.1 345 CPICIVDFEegdD-LRvLPCEghHRFHRDCVdqW 377
                   ********96642.343699888********654 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
  zf-RING_UBOX   1 CpIClelft 9  
                   CpIC+++f+
    CDO69235.1 385 CPICRQDFH 393
                   ******996 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   2.2   4.9e-07   0.00055       2      44 .]     345     390 ..     344     390 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.9e-07
   zf-RING_5   2 CnkCfeklskeekfyltsC..gHifCekClkkll.ekeavCpiCrk 44 
                 C++C   +++ ++  +++C  +H f+ +C+++ l e +  CpiCr+
  CDO69235.1 345 CPICIVDFEEGDDLRVLPCegHHRFHRDCVDQWLlELSSSCPICRQ 390
                 ********99999*******8888**********9*********97 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.14   1.6e+02      31      37 ..     343     349 ..     338     357 .. 0.76
   2 !   15.4   7.3   1.1e-05     0.013       1      40 [.     348     392 ..     345     397 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.14
  Prok-RING_4  31 ssCPlCq 37 
                  ++CP+C 
   CDO69235.1 343 ETCPICI 349
                  69****6 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.1e-05
  Prok-RING_4   1 CvlCgeqekkailepC.gHl.vCkeCfdsk..dls.sCPlCqrri 40 
                  C++  e++ + ++ pC gH  + ++C d++  +ls sCP+C++ +
   CDO69235.1 348 CIVDFEEGDDLRVLPCeGHHrFHRDCVDQWllELSsSCPICRQDF 392
                  666677899*******54555*********775557******986 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.5   1.6e-05     0.017       4      47 ..     344     384 ..     341     397 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                 S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSS CS
     FANCL_C   4 eCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslkes 47 
                  C+iC + + + + + +  C+ +   ++fH+ C+ +Wl +l++s
  CDO69235.1 344 TCPICIVDFEEGDDLRVLPCEGH---HRFHRDCVDQWLLELSSS 384
                 7*******************975...79**********999876 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.4   2.2e-05     0.024       1      48 []     345     388 ..     345     388 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
                 ETTTTEE-SSSS--.B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv   1 CriCleeeeesepl.ispCkCrGslklvHesClekWldekeantqCeiC 48 
                 C iC  + ee ++l + p  C+G  + +H++C+++Wl e   +++C iC
  CDO69235.1 345 CPICIVDFEEGDDLrVLP--CEG-HHRFHRDCVDQWLLE--LSSSCPIC 388
                 888888877777551344..678.6789*********99..8889***9 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.9   0.00021      0.24       5      36 ..     343     375 ..     340     377 .. 0.80
   2 ?    3.8   0.1     0.049        54       5      15 ..     383     393 ..     380     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
  Prok-RING_1   5 kkCpvCgkelkeedDiVvCpeCg.tpyHraCye 36 
                  + Cp+C   ++e+dD+ v p  g   +Hr+C +
   CDO69235.1 343 ETCPICIVDFEEGDDLRVLPCEGhHRFHRDCVD 375
                  68**************88884331567****76 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.049
  Prok-RING_1   5 kkCpvCgkelk 15 
                  ++Cp+C++ ++
   CDO69235.1 383 SSCPICRQDFH 393
                  68******997 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.5    0.0012       1.3       5      46 ..     343     386 ..     340     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
  Zn_ribbon_17   5 ksCayCelavkg...rvvlcgvCeHvlHasCarewfenddlaeCp 46 
                   ++C +C +  +    + vl+ + +H  H +C+++w+ +   ++Cp
    CDO69235.1 343 ETCPICIVDFEEgddLRVLPCEGHHRFHRDCVDQWLLELS-SSCP 386
                   578888887764233566777789***********76655.6888 PP

>> UBZ_FAAP20  Ubiquitin-binding zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       6.7   7.5e+03      16      22 ..     271     277 ..     270     277 .. 0.89
   2 ?    3.5   0.1      0.06        68       3      13 ..     344     354 ..     343     366 .. 0.80
   3 ?    6.6   0.5    0.0066       7.3       3      14 ..     384     395 ..     382     401 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.7
  UBZ_FAAP20  16 sqLDiDs 22 
                 +q+D D+
  CDO69235.1 271 TQMDGDG 277
                 8***997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.06
  UBZ_FAAP20   3 sCPmCqkefap 13 
                  CP+C ++f+ 
  CDO69235.1 344 TCPICIVDFEE 354
                 6*******986 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0066
  UBZ_FAAP20   3 sCPmCqkefapr 14 
                 sCP+C ++f   
  CDO69235.1 384 SCPICRQDFHAL 395
                 9********874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3407.07
//
Query:       CDO69236.1  [L=387]
Description: hypothetical protein BN946_scf185042.g138 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2876.14
//
Query:       CDO69237.1  [L=222]
Description: hypothetical protein BN946_scf185042.g139 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-39  134.4   0.0    4.2e-39  134.4   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.024   13.9   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   4.7e-43   4.2e-39     138     335 ..       8     211 ..       2     222 .] 0.86

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 4.7e-43
                  HHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH.....HHHHHHHHHHHHHH..CHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-E CS
  Aminotran_3 138 svtgskkkyktlfgpflpevvrlkypdeevlkene.....eeeaalleeleale..kkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvl 228
                   vt+sk++y+++f+  +p+v +l +p+  +l +       ++++++l++l+ l   +++  ++aA++vE++ gegG+v+a+pefl+ l ++c+kh+++
   CDO69237.1   8 TVTKSKTIYSEGFHLPMPGVFSLSFPYWHQLGVPVdtpgsKTSEMCLNQLSLLLsqATAPHDTAAILVETVMGEGGYVPAPPEFLKSLCAVCDKHGIM 105
                  5899****************99999886655443334665666777777777778888999************************************* PP

                  EEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-...GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
  Aminotran_3 229 livDEvqtGfGrTGklfAlehagvspDlmtla...KaltgGlplsavlataevmqalapgshgsTfgGnplacavalavleiieeekllenaqelgaa 323
                   i+DE q+G GrTGk +A+e+ gv pD++++a     l++G+ ls v+ ++e+ + l+pgs g+T++G+ +aca+a    ++++eek  +n+++ +++
   CDO69237.1 106 HIIDEGQSGYGRTGKNYAIEYSGVRPDIIITAnlgPCLANGFLLSGVTSRKELTDKLQPGSMGGTYAGEAVACAAA----DVMKEEKIPDNVDARSRE 199
                  ******************************9854468************************************998....789999999999999998 PP

                  HHHHHHHHCTT- CS
  Aminotran_3 324 lkegLeelqkky 335
                  l ++ ++l +++
   CDO69237.1 200 LFAAPNALRANP 211
                  887666666555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-06     0.024      98     167 ..      41     109 ..      35     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-06
                      EEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase  98 lrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      ++d +++++ +m l++l  ++ +  a   ++++i++++ +   g  + ++e l+ + a+++k+gi  ++D
       CDO69237.1  41 PVDTPGSKTSEMCLNQLSLLLSQATA-PHDTAAILVETVMGEGGYVPAPPEFLKSLCAVCDKHGIMHIID 109
                      7888888999*************888.6678888888888864446799****************98888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1740.05
//
Query:       CDO69238.1  [L=86]
Description: hypothetical protein BN946_scf185042.g140 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-24   86.3   5.4    1.3e-24   86.3   5.4    1.9  2  HSP9_HSP12  Heat shock protein 9/12


Domain annotation for each model (and alignments):
>> HSP9_HSP12  Heat shock protein 9/12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   5.4   7.4e-29   1.3e-24       1      58 [.       1      58 [.       1      59 [. 0.99
   2 ?    0.4   0.1     0.049   8.9e+02      47      57 ..      66      76 ..      61      80 .. 0.63

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 7.4e-29
                ---S-SSCHHHHHHHHCS--SSHCHHHHHHHHHHHHHHHHHHCS-TTCHHCCHHCCCG CS
  HSP9_HSP12  1 MSDagRkdftdkakeevtPDsqKStlekaketvtdaaDklarklqpddqKsttQevsD 58
                MSD+gR++ftdka+++++PDs+KSt+e+ +++++++ D++a++lqp+++KsttQ+v+D
  CDO69238.1  1 MSDTGRQSFTDKATAALKPDSEKSTTEHFGDKLKGKGDSAASTLQPQSEKSTTQRVGD 58
                *********************************************************9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.049
                TCHHCCHHCCC CS
  HSP9_HSP12 47 ddqKsttQevs 57
                +dq s tQ++ 
  CDO69238.1 66 NDQPSLTQKAK 76
                56666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 665.70
//
Query:       CDO69239.1  [L=146]
Description: hypothetical protein BN946_scf185042.g141 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.50
# Mc/sec: 881.66
//
Query:       CDO69240.1  [L=91]
Description: hypothetical protein BN946_scf185042.g142 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.057   13.3   0.0       0.11   12.4   0.0    1.6  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-06      0.11       1      27 [.       1      29 [.       1      45 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-06
  F-box-like  1 isrLPdEiLlqIFsyL.pps.dLlrlalV 27
                ++ LP+E + +I +yL ++  +L+++al 
  CDO69240.1  1 MPELPPETINRIIDYLhDDHgTLAACALA 29
                589*************656589****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 712.94
//
Query:       CDO69241.1  [L=555]
Description: hypothetical protein BN946_scf185042.g143 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-64  217.6  24.1    1.2e-63  215.3  24.1    1.8  1  Aa_trans      Transmembrane amino acid transporter protein
     0.0016   17.6  10.0     0.0016   17.6  10.0    2.6  2  Trp_Tyr_perm  Tryptophan/tyrosine permease family


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3  24.1   1.3e-67   1.2e-63       3     401 ..     171     533 ..     169     540 .. 0.90

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 1.3e-67
    Aa_trans   3 ssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsy 101
                 ++++++v+n++++i GaG+++LPyA++q+G + Gl+ll++  +++ +t+ l+v  +k      ++ sY  +  +++G++g+ ++++ ++ + fG +v  
  CDO69241.1 171 GNMFDSVANMANSILGAGIIGLPYAMRQAGFFTGLVLLVALCAVTDWTIRLIVVNAKL----SGQNSYIGVMNHCFGSSGRAAVSFFQFAFAFGGIVPV 265
                 67899***************************************************96....499*****************************65544 PP

    Aa_trans 102 liligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaigi 200
                 l l       +++        ++ ++ l ++ +  pLsl ++++kLs +S lalv +++ iv+ vlv    v ++lkg   + ++      g+f+aig+
  CDO69241.1 266 LSL-------LTK--------RQFVIALCTVCVSYPLSLYRDIHKLSRASGLALVGMII-IVTSVLVEGAHVASDLKGDPAKRFT--VLGDGVFQAIGV 346
                 433.......333........789999******************************87.6777777777777777777777764..4446******** PP

    Aa_trans 201 ivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvve 299
                 i FAf++h++ l i+ +l++p     + +v+++s++++ + +  ++ + Y++F ++++gnil+n++++++li++++++++l+++++ pl l+++r+v+e
  CDO69241.1 347 ISFAFVCHHNSLLIYGSLRTPTL-DRFNRVTHISTSISLIACCTLAISAYVVFTDKTQGNILNNFGPNDTLINVARFCFGLNMFTTLPLELFVCREVIE 444
                 *********************99.8899*********************************************************************** PP

    Aa_trans 300 nllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlgll 398
                 + +++          ++p++  +++++++++++++++i+++++ l+ +l+++G  s+t l+fi+Pa  +lkl+ +   +  +  ++   +++c+ +g  
  CDO69241.1 445 QYFFE----------HEPFNMQRHVFFTTAILTSSMIISMITCDLGVMLEITGGASATALAFIFPAACYLKLKAPGAPWYARAKLP---AVLCAAFGGG 530
                 ***86..........899999****************************************************9988776666555...5677777655 PP

    Aa_trans 399 lvf 401
                 ++ 
  CDO69241.1 531 VLC 533
                 544 PP

>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  10.0   1.8e-07    0.0016       5      86 ..     173     253 ..     170     431 .. 0.85
   2 ?   -3.0   0.1      0.31   2.8e+03     342     359 ..     485     503 ..     481     534 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-07
  Trp_Tyr_perm   5 llggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalv 86 
                   ++ +v  +a ++ GaG+++lP a+ +agf+  l+ll+ ++++   ++ l++ v+ + + + s+ ++ ++++G++g+  v + 
    CDO69241.1 173 MFDSVANMANSILGAGIIGLPYAMRQAGFFTGLVLLVALCAVTDWTIRLIV-VNAKLSGQNSYIGVMNHCFGSSGRAAVSFF 253
                   56677778999**************************99999888887776.999*******************99876553 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.31
  Trp_Tyr_perm 342 yAG.laatilavilPalla 359
                    +G + at la i+Pa+  
    CDO69241.1 485 ITGgASATALAFIFPAACY 503
                   5555777777777777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3720.17
//
Query:       CDO69242.1  [L=454]
Description: hypothetical protein BN946_scf185042.g144 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-14   53.8   2.1    7.6e-14   51.7   2.1    2.2  1  GHMP_kinases_N  GHMP kinases N terminal domain
    0.00062   20.1   0.0     0.0018   18.6   0.0    1.8  1  GHMP_kinases_C  GHMP kinases C terminal
  ------ inclusion threshold ------
       0.06   13.3   0.1       0.41   10.6   0.0    2.1  2  DUF1727         Domain of unknown function (DUF1727)


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   2.1   1.3e-17   7.6e-14      10      66 .]     174     250 ..     169     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.3e-17
                     TTSSSCHHHHHHHHHHHHHHHHTT........EHHHH...............HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N  10 vgaGLGSSAAlavalvaAllallg........lslee...............aklaleaerlaqggngsggDvaasvyGg 66 
                     +++GLGSSAAl+++lv All +lg            +               ++la+  ++laqg++gsg+Dv+a+v+G+
      CDO69242.1 174 HKTGLGSSAALITSLVSALLLHLGvipsdsfsA---DaeggrntasegrklaHNLAQYVHCLAQGKVGSGFDVSAAVFGS 250
                     599****************99998555544440...044555566668889***************************95 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-07    0.0018       9      56 ..     404     449 ..     391     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.1e-07
  GHMP_kinases_C   9 dlellgellnlsqrselkavvgilppeleelleal.selGalgaklsGa 56 
                       + ++e ++ + +   +a v+i+ppe+++ll+++   +G++g++++G 
      CDO69242.1 404 LCQDIRENMRTMGE---RADVPIEPPEQTALLDSCiAVAGVIGGGVPGG 449
                     457899999*9999...9*****************77777******996 PP

>> DUF1727  Domain of unknown function (DUF1727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.9e-05      0.41      10      57 ..      39      86 ..      34     101 .. 0.88
   2 ?   -0.3   0.0      0.16   9.6e+02       3      20 ..     356     373 ..     354     397 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.9e-05
     DUF1727 10 etlrllaedkekkellillndraadgtdvsWlwDvdfeklaeskvkkv 57
                +t++ ++++ ++ +  i +  r ++ +d sWl+ vdf++ ++ +v+++
  CDO69242.1 39 TTIQSITSSASSAQSPIQIRVRSPQFEDASWLYFVDFDSPQTVRVEHI 86
                68999999999999999*********************9988888776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.16
     DUF1727   3 kNPvglnetlrllaedke 20 
                 +NP +++++++++++ ++
  CDO69242.1 356 RNPEAYRKAVKYISTIQS 373
                 8***********998553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2932.41
//
Query:       CDO69243.1  [L=1348]
Description: hypothetical protein BN946_scf185042.g145 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-104  348.4  20.8    2.5e-54  184.8   8.0    2.1  2  ABC_membrane     ABC transporter transmembrane region
    7.5e-71  237.0   0.0    4.2e-34  118.0   0.0    2.4  2  ABC_tran         ABC transporter
    2.5e-15   56.5   0.6    6.5e-05   22.5   0.0    4.2  4  SMC_N            RecF/RecN/SMC N terminal domain
    4.2e-07   30.5   2.2      0.002   18.6   0.0    3.3  2  AAA_16           AAA ATPase domain
    4.7e-07   29.0   0.6      0.002   17.0   0.1    2.8  3  ABC_ATPase       Predicted ATPase of the ABC class
    8.1e-07   28.7   0.7     0.0096   15.7   0.4    2.6  2  AAA_29           P-loop containing region of AAA domain
    1.7e-06   28.3   1.0      0.045   14.0   0.1    3.7  3  AAA_22           AAA domain
    2.6e-06   27.5   0.1       0.21   11.3   0.1    3.8  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      2e-05   24.5   0.0       0.13   12.0   0.0    2.2  2  AAA_15           AAA ATPase domain
    2.5e-05   24.2   0.0       0.12   12.3   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    4.7e-05   22.8   0.0      0.056   12.7   0.0    2.6  2  Zeta_toxin       Zeta toxin
    7.7e-05   22.5   0.9        0.7    9.6   0.0    3.3  2  AAA_30           AAA domain
    0.00086   18.9   1.7       0.41   10.2   0.2    3.0  3  AAA_25           AAA domain
      0.001   18.3   0.0       0.77    8.9   0.0    2.2  2  G-alpha          G-protein alpha subunit
     0.0017   18.8   1.2       0.58   10.6   0.1    3.9  2  AAA              ATPase family associated with various cellul
     0.0017   18.9   0.0        1.1    9.7   0.0    2.3  2  AAA_23           AAA domain
     0.0019   18.2   0.2        1.7    8.6   0.0    3.5  3  AAA_5            AAA domain (dynein-related subfamily)
     0.0027   18.3   0.0          3    8.4   0.0    2.8  2  AAA_18           AAA domain
     0.0028   17.8   0.0        4.7    7.4   0.0    3.2  3  AAA_33           AAA domain
     0.0033   17.0   0.0        1.2    8.6   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
     0.0048   17.1   3.1        4.4    7.6   0.1    3.5  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0065   16.2   0.0        1.3    8.7   0.0    2.3  2  PRK              Phosphoribulokinase / Uridine kinase family
     0.0089   16.3   1.1        2.7    8.2   0.0    3.1  3  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.039   14.4   0.1         19    5.7   0.0    3.2  2  AAA_17           AAA domain
      0.041   13.5   0.1        8.9    5.9   0.0    2.5  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.042   13.9   0.1         14    5.8   0.0    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
      0.051   13.3   0.1        7.2    6.3   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.063   13.2   0.0         15    5.5   0.0    2.4  2  APS_kinase       Adenylylsulphate kinase
      0.068   12.3   0.1        4.5    6.4   0.0    2.3  2  NB-ARC           NB-ARC domain
      0.078   13.4   0.0        7.2    7.1   0.0    2.7  2  RNA_helicase     RNA helicase
       0.11   11.7   0.0        4.7    6.3   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
       0.13   12.0   0.0         10    5.8   0.0    2.5  2  AAA_24           AAA domain
       0.16   11.9   0.0        1.8    8.5   0.0    2.2  2  Rad17            Rad17 P-loop domain
        1.1    9.3   3.2        9.6    6.2   0.1    3.0  2  DUF87            Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   8.0   4.8e-57   2.5e-54       2     274 .]      93     389 ..      93     389 .. 0.98
   2 !  169.6   4.9     2e-52   1.1e-49       3     271 ..     781    1050 ..     779    1053 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 4.8e-57
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH..........................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpet..........................ealnvysllllllglaqfilallqsyllnvtgerl 72 
                   i+++++a++ag+++pl++l ++r++++++++g+  +                          +a ++ + +l+++g+++f++++++ y++ +tge  
    CDO69243.1  93 IIGVIAAVCAGAAQPLMSLPFSRLTQDFVTFGMVAKrisqpaspsdqasaeaelpaavaafkHAAALNASYLVYIGIGMFVCTYMYMYIWVYTGEVN 189
                   6899***************************888888888999999*************************************************** PP

                   HHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  73 skrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklk 169
                    kr+r +++++ilrq++++fd+  +Ge+ +r+ +d++ +++g++e +g++f +l+ fv+g++++ + +w+l+l+++++lp i +  a++ ++l k+ 
    CDO69243.1 190 AKRIRERYLRAILRQDIAYFDNVGAGEVATRIQTDTHVVQQGISEAVGHIFNYLSAFVTGYVLAYVRSWRLALAMTSMLPGISIAGALMDHFLAKYM 286
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH CS
  ABC_membrane 170 kkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflsl 266
                   +   ++v++ +++aeE++s +rt +afg ++   + ++ ++++ +   +k a++ g+  + ++++++ +yala+ fGttl+ +ge + g+  v++++
    CDO69243.1 287 QLSLQHVSEGGTLAEEAISTVRTAHAFGTQRVLADLYDRSVQKSRAVELKTAVVHGIGLSSFFFVIFGAYALAFNFGTTLINHGEANAGQ--VINVI 381
                   ******************************************************************************************..***** PP

                   HHHHHHHH CS
  ABC_membrane 267 failfgal 274
                   fa+l+g++
    CDO69243.1 382 FAMLVGSF 389
                   ****9985 PP

  == domain 2  score: 169.6 bits;  conditional E-value: 2e-52
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH.. CS
  ABC_membrane    3 liillailagvlsplfplvlgrildtlldkgdpet.ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt.. 94  
                    ++ l+ai++g+++p f lv++r ++ + d+ +++  ++  + +l+l+++++++++++ +q++++ +t+  ls +lr+  f++ilrq+++ffd+  
    CDO69243.1  781 FGSLAAIANGATYPCFGLVFARGVNGFADTTNAQRrFDGDRNALWLFVIAILSGAAVGIQNHFFAKTAAELSAKLRSLSFRSILRQDVAFFDEdv 875 
                    56689************************97776679********************************************************** PP

                    SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  ABC_membrane   95 nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsg 189 
                    +++G+l+s l+++ +k+  + g +lg+++qs++t+++g i+++ ++w++ lv++a++p ++   +++ +++    + ++ka + + ++a E+  +
    CDO69243.1  876 HNTGNLTSTLSDNPQKIYGLAGITLGVIVQSIATVIIGSILGLSFNWQIGLVGIACMPAVVSAGYIRLRVVVLKDQHNKKAHEASAQLACEAAGA 970 
                    *********************************************************************************************** PP

                    HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane  190 irtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271 
                    irtV ++ re+ + + + ++lee++++++++ai+++++ + +q+++++++al++w+G+ lv + + +  +  +f+ l+++ f
    CDO69243.1  971 IRTVASLVREDDCSRLYSESLEEPLRRSKTSAIYSNAIYALSQAMSFWVIALIFWYGSRLVADFKRTNFQ--FFVGLMSTTF 1050
                    *************************************************************999888888..5555555444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   7.9e-37   4.2e-34       1     137 []     456     614 ..     456     614 .. 0.91
   2 !  116.7   0.0     2e-36     1e-33       1     137 []    1120    1273 ..    1120    1273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 7.9e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdee 84 
                 lk++sl++ +g+++a+vG +G+GKSt+++l+ + ++p  G+++ldg dlk  + ++lr++ig ++qep+lf ++ vren               e   e
  CDO69243.1 456 LKDLSLTFPAGKTTALVGASGSGKSTVISLIERFYDPVDGTVKLDGVDLKALNVRWLRSQIGLVSQEPTLFATT-VRENvahgltgtphehasdE---E 550
                 799*********************************************************************99.**************986550...3 PP

                 .............HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .............iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                              ++ ++s+l   +  dt+v++++  LSgGqkqr+a+ara++++p++lllDE+t+
  CDO69243.1 551 kfklireacikanADGFISRLPRGY--DTIVGERGILLSGGQKQRIAIARAIVSDPRILLLDEATS 614
                 4555555555555888999988888..*************************************96 PP

  == domain 2  score: 116.7 bits;  conditional E-value: 2e-36
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l++ +l++++g+ va+vG +G+GKSt+++l+ + ++p +G+i ldg+++++ +  ++rk+i+ ++qep+l +++ +r n                  
  CDO69243.1 1120 LRDFNLTVEPGSYVALVGASGCGKSTVIQLVERFYNPLAGTIYLDGRPITHLNVAEYRKHIALVSQEPTLYSGT-IRFNvllgatkpmeevtqeeie 1215
                  6789*********************************************************************9.99999*******9987766665 PP

                  ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                     +d++i +++++l +    dt v+ ++s+LSgGqkqr+a+arall++pk+lllDE+t+
  CDO69243.1 1216 taCRDANILDFIQSLPDGF--DTQVGGKGSQLSGGQKQRIAIARALLRNPKVLLLDEATS 1273
                  5555555888888888887..99999999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0077         4      25      43 ..     467     485 ..     455     490 .. 0.82
   2 !   19.0   0.0   1.4e-06   0.00075     135     209 ..     563     654 ..     494     659 .. 0.78
   3 ?    3.0   0.1      0.11        57      26      42 ..    1132    1148 ..    1121    1154 .. 0.85
   4 !   22.5   0.0   1.2e-07   6.5e-05     135     211 ..    1226    1315 ..    1152    1322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0077
                 SEEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldA 43 
                 + ta+vG+ GSGKs ++  
  CDO69243.1 467 KTTALVGASGSGKSTVISL 485
                 589************9865 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.4e-06
                 T.....................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 x.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.....................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                 +                     lLSgG+k+ +a+a    i  v+   + llDe  +aLD +   +v + l+++s+    +++++r  +++ ad+++
  CDO69243.1 563 NadgfisrlprgydtivgergiLLSGGQKQRIAIARA--I--VSDPRILLLDEATSALDTQSEGIVQDALDKASHGRTTVIVAHRLSTIKGADRIY 654
                 35555555555555555555558******98887743..3..45556899*******************************************998 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
                  EEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlld 42  
                    a+vG+ G+GKs +++
  CDO69243.1 1132 YVALVGASGCGKSTVIQ 1148
                  5799*********9986 PP

  == domain 4  score: 22.5 bits;  conditional E-value: 1.2e-07
                  T.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                  x.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211 
                                    +LSgG+k+ +a+a    +   +   + llDe  +aLD +  k v e l+++ k    i i++r  ++++ad+++ +
  CDO69243.1 1226 FiqslpdgfdtqvggkgsQLSGGQKQRIAIARA--L--LRNPKVLLLDEATSALDSTSEKVVQEALDRAAKGRTTIAIAHRLSTIQNADRIYFM 1315
                  2666666666666666669*******9888754..3..34444679*******************************************99865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.6    0.0021       1.1      25      47 ..     467     489 ..     454     640 .. 0.78
   2 !   18.6   0.0   3.7e-06     0.002      24     162 ..    1129    1290 ..    1118    1299 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0021
      AAA_16  25 elvllsGesGvGKsslvrellra 47 
                   + l+G+sG+GKs+++  + r 
  CDO69243.1 467 KTTALVGASGSGKSTVISLIERF 489
                 67889************877753 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.7e-06
      AAA_16   24 p.elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde...............aesaeleawreklee 103 
                  p ++v l+G+sG+GKs++++ + r ++   g i+l g+   +         +++++ ++ ++ + +e               a++   e  +e++e+
  CDO69243.1 1129 PgSYVALVGASGCGKSTVIQLVERFYNPLaGTIYLDGRPITH---------LNVAEYRKHIALVSQEptlysgtirfnvllgATKPMEEVTQEEIET 1216
                  3489***************99997666553466678887777.........2222222333333333333555555555554334445555555555 PP

      AAA_16  104 ala.....................avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrll 162 
                  a +                      +++l+g +++r++ +  r+l  l++   p vl+lD++   +d++s ++ ++ l+++
  CDO69243.1 1217 ACRdanildfiqslpdgfdtqvggKGSQLSGGQKQRIAIA--RAL--LRN---PKVLLLDEATsALDSTSEKVVQEALDRA 1290
                  5557777777777777777766666666666655555544..333..344...6699999988677778888887777765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.1   1.1e+03     243     266 ..     464     488 ..     460     495 .. 0.81
   2 !    9.0   0.0    0.0011      0.55     300     354 ..     562     617 ..     556     663 .. 0.78
   3 !   17.0   0.1   3.8e-06     0.002     297     353 ..    1218    1275 ..    1203    1300 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
                 -SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAlek 266
                 p G  t++vG    GKsT ++ +e+
  CDO69243.1 464 PAGkTTALVGASGSGKSTVISLIER 488
                 66668999**********9998876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                 E--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HH CS
  ABC_ATPase 300 vDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtN 354
                 ++   Fi++LP g dt         SG   q  +i++a+  + ++lL+DE tsA  
  CDO69243.1 562 ANADGFISRLPRGYDTIvGERGILLSGGQKQRIAIARAIVSDPRILLLDEATSALD 617
                 56778**********9844445567****************************965 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 3.8e-06
                  EEEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase  297 vkgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAt 353 
                   + ++i  Fi++LP g dt+     ++ SG   q  +i++al ++ k+lL+DE tsA 
  CDO69243.1 1218 CRDANILDFIQSLPDGFDTQvGGKGSQLSGGQKQRIAIARALLRNPKVLLLDEATSAL 1275
                  5678999*************77788999****************************95 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   1.8e-05    0.0096      19      39 ..     463     483 ..     456     487 .. 0.82
   2 !   10.4   0.0   0.00082      0.43      18      39 ..    1126    1147 ..    1120    1151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-05
      AAA_29  19 idlkg.atlltGpsGsGKSTll 39 
                 +  +g +t l+G+sGsGKST++
  CDO69243.1 463 FP-AGkTTALVGASGSGKSTVI 483
                 44.5569*************98 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00082
      AAA_29   18 eidlkgatlltGpsGsGKSTll 39  
                  ++++ + + l+G+sG GKST++
  CDO69243.1 1126 TVEPGSYVALVGASGCGKSTVI 1147
                  556556899***********98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0018      0.92       8      31 ..     469     492 ..     465     565 .. 0.79
   2 ?   -2.1   0.0       8.1   4.3e+03      89     105 ..     598     620 ..     581     640 .. 0.66
   3 !   14.0   0.1   8.6e-05     0.045       7     115 ..    1132    1289 ..    1127    1303 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0018
      AAA_22   8 lvvtGesGtGKTtllrrlleqlde 31 
                 ++++G sG+GK+t++  + + +d 
  CDO69243.1 469 TALVGASGSGKSTVISLIERFYDP 492
                 789************999999874 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 8.1
      AAA_22  89 rav...ielliiDEaqh.lr..s 105
                 ra    +++l++DEa   l+  s
  CDO69243.1 598 RAIvsdPRILLLDEATSaLDtqS 620
                 33355677999999988776543 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 8.6e-05
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldeeakaee............................................erpevvfvtlpsstsskdllre 59  
                   ++++G sG+GK+t+++ + + ++  a   +                                            e                     
  CDO69243.1 1132 YVALVGASGCGKSTVIQLVERFYNPLAGTIYldgrpithlnvaeyrkhialvsqeptlysgtirfnvllgatkpmE--------------------- 1207
                  5789******************964433333666666666666555555555544444444444444444444333..................... PP

      AAA_22   60 llralglelka..............................erlsseell.ealeqalrarav...ielliiDEaqh.lr..seealeeLrsl 115 
                            +                                ++ ++l   + ++ + ara    +++l++DEa   l+  se++++e  ++
  CDO69243.1 1208 ----------EvtqeeietacrdanildfiqslpdgfdtqvG-GKGSQLSgGQKQRIAIARALlrnPKVLLLDEATSaLDstSEKVVQEALDR 1289
                  ..........14444444444444444444444444444421.24444444666666666666667779999999887776556666666555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1    0.0004      0.21       2      23 ..     469     490 ..     468     512 .. 0.86
   2 ?   -0.7   0.0       1.8   9.7e+02     227     272 ..     574     618 ..     531     641 .. 0.70
   3 !    8.6   0.0    0.0027       1.4       3      24 ..    1134    1155 ..    1132    1212 .. 0.69
   4 ?    1.8   0.0      0.32   1.7e+02     236     271 ..    1244    1276 ..    1240    1300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0004
      AAA_21   2 nvliGpNgsGKSnLLdaldlla 23 
                 ++l+G+ gsGKS+++ +++ + 
  CDO69243.1 469 TALVGASGSGKSTVISLIERFY 490
                 89****************8874 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
      AAA_21 227 gdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHP 272
                 g++  +  r +  S G+k+ +a++ a+ +++   ++ll+DE  + L+ 
  CDO69243.1 574 GYDTIVGERGIllSGGQKQRIAIARAIVSDP---RILLLDEATSALDT 618
                 5555555555455999999999999999999...*******7777765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0027
      AAA_21    3 vliGpNgsGKSnLLdaldllar 24  
                  +l+G+ g+GKS+++++ + +  
  CDO69243.1 1134 ALVGASGCGKSTVIQLVERFYN 1155
                  79*************9987754 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.32
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLH 271 
                  +lS G+k+ +a++ allr +   ++ll+DE  + L+
  CDO69243.1 1244 QLSGGQKQRIAIARALLRNP---KVLLLDEATSALD 1276
                  799******99999***999...9******766665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00024      0.13      23      49 ..     467     492 ..     456     510 .. 0.79
   2 !   10.2   0.0   0.00084      0.44      14      50 ..    1120    1157 ..    1118    1228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
      AAA_15  23 eeltvliGkNnsGKSsilealdlFlnn 49 
                 + +t l+G+ +sGKS+++ +++ F + 
  CDO69243.1 467 K-TTALVGASGSGKSTVISLIERFYDP 492
                 4.89********************875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00084
      AAA_15   14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50  
                  l+d+ + +++  +  l+G+ ++GKS+++++ + F n  
  CDO69243.1 1120 LRDFNLTVEPGsYVALVGASGCGKSTVIQLVERFYNPL 1157
                  677777777767899*******************9965 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00023      0.12      98     119 ..     465     486 ..     436     498 .. 0.84
   2 !    9.2   0.0     0.002       1.1     100     119 ..    1131    1150 ..    1099    1162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00023
                  TTSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinal 119
                  ++kt++lvG SG GKSt+i  +
   CDO69243.1 465 AGKTTALVGASGSGKSTVISLI 486
                  469***************9876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.002
                   SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinal 119 
                   + ++lvG SG GKSt+i  +
   CDO69243.1 1131 SYVALVGASGCGKSTVIQLV 1150
                   7789************9765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00011     0.056      19      57 ..     469     507 ..     457     516 .. 0.91
   2 !    7.0   0.0    0.0061       3.2      19      40 ..    1133    1154 ..    1122    1184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                   l+G++G+GKs++++l+++  ++ ++ v+ld+ dl++l
  CDO69243.1 469 TALVGASGSGKSTVISLIERFYDPVDGTVKLDGVDLKAL 507
                 5689*****************************999986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0061
  Zeta_toxin   19 illgGqpGAGKselaellkdel 40  
                  + l+G++G+GKs++++l+++  
  CDO69243.1 1133 VALVGASGCGKSTVIQLVERFY 1154
                  6799************999765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0013       0.7      19      51 ..     467     499 ..     461     639 .. 0.75
   2 !    9.3   0.1    0.0016      0.84      16     114 ..    1128    1288 ..    1123    1298 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrvig 51 
                 ++++l+G+ G+GK+t+++ +++ ++   g+v +
  CDO69243.1 467 KTTALVGASGSGKSTVISLIERFYDPVDGTVKL 499
                 47899****************999887666664 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0016
      AAA_30   16 sgdrvavltGpAGtGKttalkalreaweaa.g....................................grviglAptgkaAkvLaeelgieastiak 75  
                  ++  +++l+G+ G GK+t+++ +++ ++   g                                    ++ ++l  t+ + +v +ee+++       
  CDO69243.1 1128 EPGSYVALVGASGCGKSTVIQLVERFYNPLaGtiyldgrpithlnvaeyrkhialvsqeptlysgtirFN-VLLGATKPMEEVTQEEIET------- 1216
                  5667899******************999885567666666444444444444444444444443332111.1222233333333333332....... PP

      AAA_30   76 llkrlk......................................grarlepgtllivDEagmvdtkqlaallkaaek 114 
                       +                                      +ra l++ ++l+ DEa  +  ++ ++++++a +
  CDO69243.1 1217 -----AcrdanildfiqslpdgfdtqvggkgsqlsggqkqriaiARALLRNPKVLLLDEATSALDSTSEKVVQEALD 1288
                  .....022222222222455667777777777777777776666555566667777777766666666666666555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.6   4.5e+03      75      97 ..     182     204 ..     179     232 .. 0.74
   2 !   10.2   0.2   0.00078      0.41      30      50 ..     463     483 ..     446     486 .. 0.90
   3 ?    6.5   0.0     0.011       5.6      32      50 ..    1129    1147 ..    1123    1151 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.6
      AAA_25  75 lyvsaEdsedelrrRlravgeal 97 
                 +++ +E +++++r+R+ ++   +
  CDO69243.1 182 WVYTGEVNAKRIRERYLRAILRQ 204
                 88999*********999887554 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00078
      AAA_25  30 lpagelallaGapgtGKttla 50 
                  pag++++l+Ga+g+GK+t+ 
  CDO69243.1 463 FPAGKTTALVGASGSGKSTVI 483
                 59*****************86 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.011
      AAA_25   32 agelallaGapgtGKttla 50  
                   g+ ++l+Ga+g+GK+t+ 
  CDO69243.1 1129 PGSYVALVGASGCGKSTVI 1147
                  68999************85 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0051       2.7      27      49 ..     470     492 ..     464     504 .. 0.91
   2 !    8.9   0.0    0.0015      0.77      26      69 ..    1133    1175 ..    1127    1312 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0051
                 EEEESTTSSHHHHHHHHHHHCS- CS
     G-alpha  27 lllGqseSGKsTilkqlkllykk 49 
                  l+G+s+SGKsT++  ++++y++
  CDO69243.1 470 ALVGASGSGKSTVISLIERFYDP 492
                 589***************99976 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0015
                  EEEEESTTSSHHHHHHHHHHHCS--..........--HHHHHCCHHHHHHHHHH CS
     G-alpha   26 llllGqseSGKsTilkqlkllykkg..........fseeelatwraviqlnivr 69  
                  + l+G+s++GKsT+++ ++++y++           +            +ln+ +
  CDO69243.1 1133 VALVGASGCGKSTVIQLVERFYNPLagtiyldgrpI-----------THLNVAE 1175
                  579*******************88644444444441...........3333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.22   1.1e+02      40      74 ..     586     619 ..     469     652 .. 0.61
   2 !   10.6   0.1    0.0011      0.58       2     119 ..    1134    1310 ..    1133    1318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.22
                 THHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  40 gesekkirelfkeakekakpsilfiDEidalaksr 74 
                   + +k r  +++a  +  p il++DE+ +   ++
  CDO69243.1 586 LSGGQKQRIAIARAIVSD-PRILLLDEATSALDTQ 619
                 445556666666666665.8999999998888877 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0011
                  EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS................................................... CS
         AAA    2 llyGppGtGKTllakavakel..........gvefleisgsellsk................................................... 37  
                   l+G  G+GK+++++ v +            g+++  ++++e +++                                                   
  CDO69243.1 1134 ALVGASGCGKSTVIQLVERFYnplagtiyldGRPITHLNVAEYRKHialvsqeptlysgtirfnvllgatkpmeevtqeeietacrdanildfiqsl 1230
                  6999**********99998864444545555588999999999966999999999999999999999999999999999999999999999999999 PP

                  ............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHH CS
         AAA   38 ............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpal 119 
                               +  + +k r  +++a    +p++l++DE+ +   s       +e+ v+++L ++ +g        + i++++r +++++a 
  CDO69243.1 1231 pdgfdtqvggkgSQLSGGQKQRIAIARALLR-NPKVLLLDEATSALDST------SEKVVQEALDRAAKGR-------TTIAIAHRLSTIQNAD 1310
                  9999998777665555555555555555444.59*********999888......4455555554444444.......4477778777777765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0     0.002       1.1      11      39 ..     457     486 ..     440     488 .. 0.83
   2 ?    6.6   0.0     0.019        10       7      37 ..    1117    1148 ..    1115    1151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.002
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildAi 39 
                 +d ++ F   + t+++G  G+GK+T++  i
  CDO69243.1 457 KDLSLTFpAGKTTALVGASGSGKSTVISLI 486
                 667777765689*************99766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.019
      AAA_23    7 frsfrdqeidFskglt.lItGpNGaGKTTild 37  
                  +r +rd+++  ++g + +++G  G+GK+T+++
  CDO69243.1 1117 VRVLRDFNLTVEPGSYvALVGASGCGKSTVIQ 1148
                  5666777776777543289**********997 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.042        22       4      23 ..     471     490 ..     469     499 .. 0.86
   2 !    8.6   0.0    0.0033       1.7       2      24 ..    1133    1155 ..    1132    1164 .. 0.87
   3 ?   -1.5   0.0       4.3   2.3e+03      63      85 ..    1260    1282 ..    1247    1291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.042
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 LvG++G+gKs+++  + +++
  CDO69243.1 471 LVGASGSGKSTVISLIERFY 490
                 9***********99998876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0033
                  EEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5    2 vlLvGppGtgKselaerlaaaln 24  
                  v LvG++G+gKs++++ + +++n
  CDO69243.1 1133 VALVGASGCGKSTVIQLVERFYN 1155
                  679*************9998875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.3
                  --G-SEEEEESGGG--HHHHHHH CS
       AAA_5   63 aregeilvlDEveraesevlnsL 85  
                   r++++l+lDE + a +++ +++
  CDO69243.1 1260 LRNPKVLLLDEATSALDSTSEKV 1282
                  35999*******99988876654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.019        10       3      20 ..     471     488 ..     470     511 .. 0.85
   2 !    8.4   0.0    0.0056         3       1      20 [.    1133    1152 ..    1133    1189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.019
      AAA_18   3 ltGtpGvGKttlakeLsk 20 
                 l G++G+GK+t+   +++
  CDO69243.1 471 LVGASGSGKSTVISLIER 488
                 89**********998854 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0056
      AAA_18    1 IlltGtpGvGKttlakeLsk 20  
                  ++l G++G+GK+t+ + +++
  CDO69243.1 1133 VALVGASGCGKSTVIQLVER 1152
                  6899***********99844 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.7   4.6e+03      22      59 ..     110     150 ..     104     165 .. 0.71
   2 ?    6.5   0.0     0.017       8.8       4      16 ..     471     483 ..     469     494 .. 0.88
   3 !    7.4   0.0    0.0089       4.7       2      19 ..    1133    1150 ..    1133    1213 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.7
      AAA_33  22 klgavllssdtlrrrlfg...tdqqsktdytrvldrlyqil 59 
                  l++ +l++d + + +++   +++ s++d++ ++ +l + +
  CDO69243.1 110 SLPFSRLTQDFVTFGMVAkriSQPASPSDQASAEAELPAAV 150
                 688999****9999998878777778888877776665554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.017
      AAA_33   4 lvGlpGsGKstla 16 
                 lvG++GsGKst++
  CDO69243.1 471 LVGASGSGKSTVI 483
                 79*********97 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0089
      AAA_33    2 vllvGlpGsGKstlaerl 19  
                  v lvG++G+GKst+++ +
  CDO69243.1 1133 VALVGASGCGKSTVIQLV 1150
                  568**********98754 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.018       9.3      29      51 ..     462     484 ..     454     494 .. 0.84
   2 !    8.6   0.0    0.0023       1.2      16      52 ..    1113    1149 ..    1104    1157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
       AAA_7  29 llknkkpvllvGptGtGKtviik 51 
                  + ++k + lvG +G+GK+++i+
  CDO69243.1 462 TFPAGKTTALVGASGSGKSTVIS 484
                 56678999************997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0023
       AAA_7   16 tvdtvrysyllelllknkkpvllvGptGtGKtviikd 52  
                  t   vr+   ++l ++ +  v lvG +G+GK+++i+ 
  CDO69243.1 1113 TRPGVRVLRDFNLTVEPGSYVALVGASGCGKSTVIQL 1149
                  5555666677889999999***************985 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0084       4.4      62      82 ..     602     622 ..     581     630 .. 0.79
   2 !    7.5   0.5     0.009       4.7      31      88 ..    1243    1287 ..    1224    1289 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0084
     SbcCD_C  62 palrlvfLDEAFsklDeesia 82 
                 +++r+++LDEA s lD +s  
  CDO69243.1 602 SDPRILLLDEATSALDTQSEG 622
                 569*************99865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.009
     SbcCD_C   31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88  
                  ++lSGG+kq +   a+a   +al++       ++++++LDEA s lD++s + + e+l
  CDO69243.1 1243 SQLSGGQKQRI---AIA---RALLR-------NPKVLLLDEATSALDSTSEKVVQEAL 1287
                  66677777432...233...23333.......4899***********99988877766 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.034        18       3      22 ..     470     489 ..     469     506 .. 0.84
   2 !    8.7   0.0    0.0025       1.3       2      24 ..    1133    1155 ..    1132    1185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.034
         PRK   3 gvagsSGaGkttvarkleki 22 
                 ++ g+SG+Gk+tv   +e  
  CDO69243.1 470 ALVGASGSGKSTVISLIERF 489
                 578**********9998865 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0025
         PRK    2 IgvagsSGaGkttvarklekifg 24  
                  +++ g+SG+Gk+tv + +e   +
  CDO69243.1 1133 VALVGASGCGKSTVIQLVERFYN 1155
                  6889**********998777666 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       6.5   3.4e+03      83     121 ..     171     209 ..     135     227 .. 0.74
   2 ?    5.3   0.1      0.04        21       3      20 ..     470     487 ..     468     497 .. 0.86
   3 !    8.2   0.0    0.0051       2.7       2      20 ..    1133    1151 ..    1132    1181 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.5
      AAA_28  83 ldtlaYarayggeaeaeleaaarekrydlvfllppapei 121
                 + +++Y+  y + +  e++a+  ++ry + +l +  +++
  CDO69243.1 171 MFVCTYMYMYIWVYTGEVNAKRIRERYLRAILRQDIAYF 209
                 567889999999999999998888898887776666666 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.04
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 +++G++++GK+t+++ ++
  CDO69243.1 470 ALVGASGSGKSTVISLIE 487
                 799**********98766 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0051
      AAA_28    2 ivitGgestGKTtlleaLa 20  
                  ++++G++++GK+t+++  +
  CDO69243.1 1133 VALVGASGCGKSTVIQLVE 1151
                  799***********98765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.062        32       1      18 [.     472     489 ..     472     496 .. 0.83
   2 ?    5.7   0.0     0.036        19       1      19 [.    1136    1153 ..    1136    1174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.062
                 EE-TTSSHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvek 18 
                 +G  GsGK+t+++ + + 
  CDO69243.1 472 VGASGSGKSTVISLIERF 489
                 79*********9777665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.036
                  EE-TTSSHHHHHHHHHHHH CS
      AAA_17    1 lGgPGsGKgtqceklveky 19  
                  +G  G+GK+t++ +lve++
  CDO69243.1 1136 VGASGCGKSTVI-QLVERF 1153
                  79**********.666654 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.028        15       6      35 ..     458     487 ..     452     497 .. 0.82
   2 ?    5.9   0.0     0.017       8.9       1      37 [.    1116    1153 ..    1116    1262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.028
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqsls 35 
                  D+ +++  G++t+++ga+g Gk+++++ + 
   CDO69243.1 458 DLSLTFPAGKTTALVGASGSGKSTVISLIE 487
                  67789999***************9987665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.017
                   SSHHH.HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                   xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab    1 Girvl.DalfpivqGqrtlipgafgvGktvisqslskq 37  
                   G+rvl D  +++  G  ++++ga+g+Gk++++q + + 
   CDO69243.1 1116 GVRVLrDFNLTVEPGSYVALVGASGCGKSTVIQLVERF 1153
                   667775778899999****************9987665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.042        22       2      18 ..     469     485 ..     468     498 .. 0.89
   2 ?    5.8   0.0     0.026        14       2      17 ..    1133    1148 ..    1132    1156 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.042
                 EEEEESTTSSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLina 18 
                  a+vG + +GKSt+i+ 
  CDO69243.1 469 TALVGASGSGKSTVISL 485
                 589**********9975 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
                  EEEEESTTSSHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLin 17  
                  va+vG +  GKSt+i+
  CDO69243.1 1133 VALVGASGCGKSTVIQ 1148
                  89***********996 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.23   1.2e+02       5      18 ..     473     486 ..     469     523 .. 0.76
   2 ?   -0.3   0.0       1.4   7.4e+02     174     213 ..     951     988 ..     940     995 .. 0.83
   3 ?    6.3   0.0     0.014       7.2       5      17 ..    1137    1149 ..    1134    1169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.23
  Viral_helicase1   5 GvpGcGKStlirkl 18 
                      G+ G+GKSt+i  +
       CDO69243.1 473 GASGSGKSTVISLI 486
                      899******99654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
  Viral_helicase1 174 qalkealgvrevttvhevqGltfdkVtlvllketdlelis 213
                      q++k+a+ ++ + + +e+ G    + +lv++++ +++ +s
       CDO69243.1 951 QHNKKAHEAS-AQLACEAAGAIRTVASLVREDDCSRL-YS 988
                      7889999999.*******************9776644.54 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.014
  Viral_helicase1    5 GvpGcGKStlirk 17  
                       G+ GcGKSt+i+ 
       CDO69243.1 1137 GASGCGKSTVIQL 1149
                       899********95 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.036        19       3      38 ..     467     501 ..     465     514 .. 0.74
   2 ?    5.5   0.0     0.028        15       4      41 ..    1132    1168 ..    1129    1175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.036
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdG 38 
                  +  l G sgsGKst+   +e+   +    ++ LdG
  CDO69243.1 467 KTTALVGASGSGKSTVISLIERF-YDPVDGTVKLDG 501
                 567799**********9998864.344444555555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
                  EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase    4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41  
                   v l G sg GKst+ + +e+  +     ++ LdG  +
  CDO69243.1 1132 YVALVGASGCGKSTVIQLVERFYN-PLAGTIYLDGRPI 1168
                  67899**********999997554.4455666888766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.073        39      23      46 ..     469     492 ..     455     502 .. 0.82
   2 ?    6.4   0.0    0.0085       4.5      18      40 ..    1129    1150 ..    1119    1160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.073
                 EEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC  23 valvGmgGvGKttlakqilnksde 46 
                  alvG  G+GK+t+++ i + +d 
  CDO69243.1 469 TALVGASGSGKSTVISLIERFYDP 492
                 589***********9988766555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0085
                  SCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC   18 lqslvvalvGmgGvGKttlakqi 40  
                  ++   valvG  G+GK+t+++ +
  CDO69243.1 1129 PG-SYVALVGASGCGKSTVIQLV 1150
                  55.579************99866 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.21   1.1e+02       3      17 ..     471     485 ..     469     500 .. 0.84
   2 ?    7.1   0.0     0.014       7.2       2      17 ..    1134    1149 ..    1133    1182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.21
  RNA_helicase   3 lyGpsgeGKStlake 17 
                   l+G+sg GKSt++  
    CDO69243.1 471 LVGASGSGKSTVISL 485
                   79*********9876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.014
  RNA_helicase    2 wlyGpsgeGKStlake 17  
                     l+G+sg+GKSt+++ 
    CDO69243.1 1134 ALVGASGCGKSTVIQL 1149
                    689*********9987 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.11        55      57      76 ..     470     489 ..     460     526 .. 0.74
   2 ?    6.3   0.0    0.0089       4.7      51      76 ..    1128    1153 ..    1121    1171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.11
      DUF815  57 LLwGarGtGKSslvkallne 76 
                  L+Ga G+GKS+++  + + 
  CDO69243.1 470 ALVGASGSGKSTVISLIERF 489
                 699********999755444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0089
      DUF815   51 lpannvLLwGarGtGKSslvkallne 76  
                  +p + v L+Ga G+GKS++++ + + 
  CDO69243.1 1128 EPGSYVALVGASGCGKSTVIQLVERF 1153
                  5667799************9977655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.02        10       3      25 ..     467     488 ..     465     535 .. 0.86
   2 ?    3.5   0.0       0.1        53       5      22 ..    1133    1150 ..    1130    1187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.02
      AAA_24   3 lkiliyGpsgiGKTtlakelgpk 25 
                 +  +++G sg+GK+t+++ + ++
  CDO69243.1 467 KTTALVGASGSGKSTVISLI-ER 488
                 67899***********9987.44 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  ++++G sg GK+t++   
  CDO69243.1 1133 VALVGASGCGKSTVIQLV 1150
                  789**********99766 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0         1   5.3e+02      50      65 ..     471     486 ..     459     497 .. 0.87
   2 ?    8.5   0.0    0.0034       1.8      49      66 ..    1134    1151 ..    1120    1158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1
       Rad17  50 isGPsGCgkstvvkvL 65 
                 + G sG gkstv+  +
  CDO69243.1 471 LVGASGSGKSTVISLI 486
                 689*********9876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0034
       Rad17   49 LisGPsGCgkstvvkvLs 66  
                   + G sGCgkstv++ + 
  CDO69243.1 1134 ALVGASGCGKSTVIQLVE 1151
                  578***********9875 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.018       9.6      26      46 ..     469     488 ..     465     500 .. 0.78
   2 ?    2.2   0.0       0.3   1.6e+02      26      56 ..    1133    1161 ..    1130    1165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
       DUF87  26 lAilgsTGsGKSntvavLlee 46 
                 +A +g +GsGKS+ +++ +e+
  CDO69243.1 469 TALVGASGSGKSTVISL-IER 488
                 699*********86655.555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.3
       DUF87   26 lAilgsTGsGKSntvavLleellekkgatil 56  
                  +A +g +G GKS+ +  L+e+ +  + a ++
  CDO69243.1 1133 VALVGASGCGKSTVI-QLVERFY-NPLAGTI 1161
                  799*********755.5777777.5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.09u 0.38s 00:00:01.47 Elapsed: 00:00:00.56
# Mc/sec: 7205.09
//
Query:       CDO69244.1  [L=255]
Description: hypothetical protein BN946_scf185042.g146 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.047   13.7   0.0      0.074   13.0   0.0    1.4  1  Rsd_AlgQ      Regulator of RNA polymerase sigma(70) subunit, 
        0.1   11.9   0.1       0.32   10.3   0.0    1.8  2  Phage_capsid  Phage capsid family


Domain annotation for each model (and alignments):
>> Rsd_AlgQ  Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.3e-06     0.074      62      90 ..     133     162 ..      91     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.3e-06
    Rsd_AlgQ  62 vDYvSaGhFevYeqlveeaeefgdke.lel 90 
                  DY+SaG F +++ +++ ++e+++++ l+l
  CDO69244.1 133 QDYLSAGEFALFQTVIDSLKEAKNDSaLKL 162
                 4*****************999887664655 PP

>> Phage_capsid  Phage capsid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.15   1.3e+03     145     187 ..      39      88 ..      22      96 .. 0.56
   2 ?   10.3   0.0   3.6e-05      0.32     142     242 ..     114     224 ..     103     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.15
  Phage_capsid 145 atntaddli...dliy.slkaayranasfvmnpstlaalr..klkd.adG 187
                   a++ a  ++     i+ ++ka +r + s v+n++ +a+l   k++d  ++
    CDO69244.1  39 AAVVAGSIVsfvGNIEnQMKASFRLSLSDVLNSTLFAQLSanKMADpHND 88 
                   33455555533333333555555543368999999999884455565555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 3.6e-05
  Phage_capsid 142 avtatntaddlidliyslkaayranasfvmnpstlaalrklkdadGnylwq............pgl....qagqp.tLlGrpvveseampdagaksa 221
                   ++ ++n+   + +li++l ++y  ++ f++ ++++  l+++k ++   l+             +g+    q+++  +++ + + +s++++       
    CDO69244.1 114 DFHDANSIGSVDQLILRLAQDYLSAGEFALFQTVIDSLKEAKNDSALKLFDssskesnkanfrAGVvsdaQSNAMfKIWEYSYHVSQDID------- 203
                   444566667788999999999999889999999999999999666666666666666666666554443244444999***********4....... PP

  Phage_capsid 222 geilfGDfsayiivdreg.vei 242
                     +lf Df  ++  ++ g  ++
    CDO69244.1 204 -NVLFFDFGSQRASFKAGnCTL 224
                   .4******55555444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1809.33
//
Query:       CDO69245.1  [L=238]
Description: hypothetical protein BN946_scf185042.g147 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1610.78
//
Query:       CDO69246.1  [L=452]
Description: Glycosyltransferase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3428.33
//
Query:       CDO69247.1  [L=524]
Description: Glycosyltransferase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-16   57.9   0.0    1.1e-15   57.4   0.0    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    0.00047   20.2   0.0    0.00083   19.4   0.0    1.3  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.2e-19   1.1e-15     325     382 ..     378     435 ..     344     447 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.2e-19
       UDPGT 325 llvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeak 382
                 l  +W+Pq  +L HP t+ FvtH+G n+v+E+i+ G+P +  P+ +dq+ N+ r++ +
  CDO69247.1 378 LTSRWVPQQLILNHPVTGWFVTHGGHNSVLESIVAGIPQIFWPFESDQPINAVRLTEV 435
                 5568************************************************999865 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.2e-08   0.00083      77     119 ..     398     436 ..     395     447 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.2e-08
                      EECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHH CS
  Glyco_tran_28_C  77 IsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekag 119
                      ++++G+++++E+ ++g p I+ p+++    +q  Na+ l++ +
       CDO69247.1 398 VTHGGHNSVLESIVAGIPQIFWPFES----DQPINAVRLTEVF 436
                      8*************************....*******998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3780.69
//
Query:       CDO69248.1  [L=351]
Description: Polysaccharide Lyase Family 14 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   13.7   0.0      0.077   13.1   0.0    1.4  1  DUF1080   Domain of Unknown Function (DUF1080)


Domain annotation for each model (and alignments):
>> DUF1080  Domain of Unknown Function (DUF1080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.3e-06     0.077     104     160 ..     186     260 ..     121     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.3e-06
                 STTSBTTT..................BTTB--....SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSHHH CS
     DUF1080 104 stGslyde..................eskqvk....pkakaakppgeWntyeiivkgdrvtvwlNGvlvldftdldaet 160
                  +G++y +                            ++ + ++ +g+Wn++ +iv+ ++  ++ NG++vl +++ +a +
  CDO69248.1 186 AAGEVYAYiptpnnmcsnsnfkcnddG----FgtsiDRGSFSFAAGQWNRVSLIVRLNQPLTTANGEVVLYYNNVKALD 260
                 556666656666666655555444331....023346788899****************88789*****9999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2620.88
//
Query:       CDO69249.1  [L=570]
Description: hypothetical protein BN946_scf185042.g151 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-37  127.2   0.0    2.4e-36  125.1   0.0    2.0  2  Pro-kuma_activ  Pro-kumamolisin, activation domain
    1.1e-07   31.4   1.7    1.6e-07   30.9   1.7    1.3  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   2.7e-40   2.4e-36       4     142 .]      38     176 ..      35     176 .. 0.98
   2 ?   -1.5   0.0      0.32   2.9e+03      53     105 ..     426     480 ..     422     491 .. 0.82

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 2.7e-40
  Pro-kuma_activ   4 tkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqve 98 
                     + +g+a+++t l +ri+L q +++ le++lmdvsdp sp  g++l++eev++ +ap++e++daV+++L+++gi+a + s+ ++w++fs++v++++
      CDO69249.1  38 KLVGPASPDTMLDLRIALVQGDMAGLEKALMDVSDPASPLKGQFLSKEEVEAFVAPKQETVDAVTSFLKENGIEAAQASPAGDWLSFSIPVSKAN 132
                     67899****************************************************************************************** PP

  Pro-kuma_activ  99 rllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                      +++++f+ ++h  ++++ +r+  ys+P++l  + d++hpt+ f
      CDO69249.1 133 AIFDAEFSVFNHTPTGTTSVRTLAYSIPADLVGKLDFVHPTTVF 176
                     *****************************************966 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
  Pro-kuma_activ  53 vaelfapseeaidaVrnwLessgiaasr..hsdtkgwiafsatvaqverllktsf 105
                     + + fa+ + ++ aV+ +L + g ++     ++++g+  +sa+ ++ve +++ +f
      CDO69249.1 426 FSNIFAQPSFQSGAVTTFLNAIGNTNAGkfNKAGRGFPDISAQGENVEIVFQGEF 480
                     5677777777899999999999988888888888888899998888888888766 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   1.7   1.8e-11   1.6e-07     122     265 ..     337     504 ..     287     542 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.8e-11
                   -SEEEE-EESCETTCHHCHHHHHH...HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEEC...TTTSTTCEEEEEES.................. CS
                   xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.................. RF
  Peptidase_S8 122 vdvinmslgestslpktgrsieal...ainravnkkgvlvviSaGNngktgsslqagspvgt...pstsknvitvgayt.................. 194
                   ++v+  s+g  ++ p+  ++i+++   a++++   +g+ + +S+G  g +gs  +++++      ps++  v++vga+t                  
    CDO69249.1 337 PQVLTTSYG--FDEPDLPTNIATNlcnAYMQLG-ARGTSILFSSGDGGVSGS-QSQSCTTFIptfPSGCPFVTSVGATTgigpetaadfsgggfsni 429
                   224444444..6666666666666888888888.89************9999.444444433347999***************************** PP

                   ..................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHH CS
                   ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ..................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsal 265
                                      + +   f + G  +     pdi+a G+n v+ + + +        +  + GTS +sP  a+++ ll ++l
    CDO69249.1 430 faqpsfqsgavttflnaiGNTNAGKFNKAGRGF-----PDISAQGEN-VEIVFQGE--------FGEVAGTSCSSPITASIISLLNDEL 504
                   ******777777776666555566666666666.....9********.99999999........99****************9998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 3596.42
//
Query:       CDO69250.1  [L=318]
Description: hypothetical protein BN946_scf185042.g152 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-26   93.5   0.1    1.4e-26   93.1   0.1    1.2  1  Lipase_3       Lipase (class 3)
      0.003   17.1   0.0     0.0046   16.5   0.0    1.2  1  DUF676         Putative serine esterase (DUF676)
     0.0034   17.0   0.0      0.037   13.6   0.0    2.1  2  DUF2974        Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.012   16.2   0.2      0.029   15.0   0.1    1.6  2  Abhydrolase_6  Alpha/beta hydrolase family
       0.02   14.8   0.0      0.029   14.3   0.0    1.4  1  Cutinase       Cutinase
      0.042   13.7   0.0       0.13   12.1   0.0    1.8  2  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.1   4.5e-30   1.4e-26       1     140 [.     109     251 ..     109     253 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 4.5e-30
                 EEEE----..------------EEE-HHHH-G...TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS- CS
    Lipase_3   1 vvafRGte..sakdwltdldfslteakellek...eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenek 94 
                 vva +Gt+  +  + l+dl+f ++ a++++     +++k+h gf  a    +++ v++++++ l++  + ++ vtGHSLG+a+A++ a++l+++  + +
  CDO69250.1 109 VVAHQGTDpkNFLSDLNDLKFAQVGANKTVLPtasDDIKMHDGFAYAQS-RTADVVFSTVQSALASTASKKVLVTGHSLGAAIASIDAMMLKTRLDQ-N 205
                 68889998878888899999999999998777899************99.9*****************************************99955.9 PP

                 --EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3  95 kkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                   +t+v+fG Prvgn++ a++vd++l + +++v+n++D+vPr+pp+
  CDO69250.1 206 ISLTAVVFGLPRVGNQAWADFVDQTLGSSFTHVTNQDDPVPRVPPQ 251
                 9*******************************************97 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0046      43     103 ..     139     201 ..     123     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
      DUF676  43 lmsennesktfkgidvlgerlaeevlevvkkkkdk..nkkiSfvghSlGgliaraaiaklkek 103
                 l     + k ++g+ +   r+a+ v ++v+++  +   kk+ + ghSlG  ia++    lk +
  CDO69250.1 139 LPTASDDIKMHDGFAYAQSRTADVVFSTVQSALAStaSKKVLVTGHSLGAAIASIDAMMLKTR 201
                 5566667789********************998887889***********9998765555544 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.085   2.5e+02      31      48 ..     100     117 ..      97     130 .. 0.87
   2 !   13.6   0.0   1.2e-05     0.037      78     114 ..     171     207 ..     144     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.085
     DUF2974  31 tfrleedtlvvaFRGTdd 48 
                 + +++edt+vva+ GTd 
  CDO69250.1 100 AHDVDEDTIVVAHQGTDP 117
                 56899***********95 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
     DUF2974  78 ileesegkiylgGhSkGGnlAvyaamnaeddlqeris 114
                 ++++ ++k++++GhS G+ +A   am+++++l + is
  CDO69250.1 171 LASTASKKVLVTGHSLGAAIASIDAMMLKTRLDQNIS 207
                 45667788**********************9999987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   4.2e+03     178     185 ..      89      96 ..      10     145 .. 0.61
   2 ?   15.0   0.1   9.7e-06     0.029      54     114 ..     165     229 ..     112     268 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
                    TT-CHHHH CS
  Abhydrolase_6 178 geDplvpr 185
                    g+D l+pr
     CDO69250.1  89 GDDGLIPR 96 
                    22223333 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.7e-06
                    HHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC..........EEEEES-..----TTTS----TTHHH CS
  Abhydrolase_6  54 aalldelaa.gggpvvlvGHSlGGalalaaapla........lvvgvlldppptalpagllaaalellla 114
                    + +  +la+   ++v + GHSlG+a+a+     a        +   + l + + +lp    +a++ ++++
     CDO69250.1 165 STVQSALAStASKKVLVTGHSLGAAIASI---DAmmlktrldQ--NISLTAVVFGLPRVGNQAWADFVDQ 229
                    33333333345999***************...55444776441..2444442222333334444444443 PP

>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.8e-06     0.029      57     149 ..     155     245 ..     107     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.8e-06
                 S-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHHHHTT.....S-HHHHHHEE.EEEEES-TTCCCCTT..S-TTS-GGGEEEE--TT-GG CS
    Cutinase  57 seeagakeaaalvqslaskCPdtkivlgGYSqGaqvidnaieggatatlpaavadkva.avvlfGdpsnvaglp..evsklyaskikslCdagDpi 149
                  +++ a+ + + vqs+ ++    k+ + G S Ga+++   +       l+   +++++  +v+fG p+ ++++    v+++ +s+ +++ +++Dp+
  CDO69250.1 155 AQSRTADVVFSTVQSALASTASKKVLVTGHSLGAAIASIDAMM-----LKTRLDQNISlTAVVFGLPRVGNQAWadFVDQTLGSSFTHVTNQDDPV 245
                 55667777889999**********************9988888.....999999999757899****98554432267777888888888888887 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.27   8.2e+02     165     192 ..     133     160 ..     108     174 .. 0.77
   2 ?   12.1   0.0   4.4e-05      0.13      65     120 ..     171     235 ..     134     254 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.27
                    T---EEEEEETT-TTHHHHHHHHHHHHH CS
  Abhydrolase_3 165 glpptlvvvaefDplrdegeayaerlra 192
                    g+ +t++ +a  D+  ++g aya+   a
     CDO69250.1 133 GANKTVLPTASDDIKMHDGFAYAQSRTA 160
                    578999999999*999999999987655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.4e-05
                    HHTETTCEEEEEEETHHHHHHHHHHHHHHHT..T---EEEEEEESE......-SST.SSTTSHHH CS
  Abhydrolase_3  65 elgadpsrivlaGdSaGGnlaaavalrarde..gepkvagqvliyP......vtdl.ertesesi 120
                     +++  +++ + G S G+ +a   a++++ +  ++++++++v   P      + d+ ++t ++s+
     CDO69250.1 171 LASTASKKVLVTGHSLGAAIASIDAMMLKTRldQNISLTAVVFGLPrvgnqaWADFvDQTLGSSF 235
                    4567889***************9999998882234447777777778766665555544445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2124.27
//
Query:       CDO69251.1  [L=288]
Description: hypothetical protein BN946_scf185042.g153 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-24   86.5   0.8    2.3e-24   86.1   0.8    1.2  1  DUF21     Cyclin M transmembrane N-terminal domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.8   1.3e-28   2.3e-24      22     172 ..       2     141 ..       1     146 [. 0.88

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.3e-28
       DUF21  22 slsrlrleelaekgk....kkakrllkllknperlLstlligntlvnillsalatalfvellaegalavviatviv.tllilvfgEilPkslalkyaek 115
                 sl++++l+ l+ +g+    k+ak++l+++kn + lL++ll++n++vn +l+++ +++++  ++          v+v t+li++f+Ei+P+sl+++y ++
  CDO69251.1   2 SLDETQLHVLSISGTprqkKYAKKILPIRKNGHLLLISLLLANMIVNEALPVISEPVLGGGIES---------VVVsTVLIVLFSEIIPQSLCTRYGLA 91 
                 667777766666555445489999************************************9983.........6777********************** PP

       DUF21 116 ialalapplrvlmvllyPlvwllskllnlilesesepavseeelkklveeseeegvi 172
                 i + +++++r+l++ +  ++w++ kl +l+l+       s  elk+l+++++++g++
  CDO69251.1  92 IGAQMSWFVRILIMTIGVVSWPVAKLMELLLG-------SHHELKELIALHAAHGEL 141
                 *******************************5.......677888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1902.29
//
Query:       CDO69252.1  [L=155]
Description: hypothetical protein BN946_scf185042.g154 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.4    7.3   6.4        3.1    6.9   6.4    1.1  1  DUF4106   Protein of unknown function (DUF4106)


Domain annotation for each model (and alignments):
>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.4   0.00017       3.1     178     258 ..       8      87 ..       3      96 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00017
     DUF4106 178 reapapglpktftsshghrhrh.apkptqqptv.qnpaqqptqqptvqqpaqvqqpaqqpppqpaqqptvqnpaqqqpqteqg 258
                 r  pap    + t     r rh ap p    tv   p+ q t  pt+    ++ +  qqp  + +      n ++q  +   g
  CDO69252.1   8 RTLPAPTSSTADTKRFLARRRHkAPPPRGAQTVpSSPTLQGTLSPTLTTTGEQGKQQQQPARKRS---GASNVSRQIGKVFGG 87 
                 77899999999999888888875677775555527899999999997766644444444444333...445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1177.01
//
Query:       CDO69253.1  [L=768]
Description: hypothetical protein BN946_scf185042.g155 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-62  211.9   0.0    1.3e-62  211.5   0.0    1.1  1  Pkinase      Protein kinase domain
    9.4e-30  103.7   0.0    1.3e-29  103.3   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    2.9e-07   30.1   0.0    5.3e-07   29.2   0.0    1.4  1  Kinase-like  Kinase-like
     0.0058   16.3   0.0       0.56    9.8   0.0    2.2  2  FTA2         Kinetochore Sim4 complex subunit FTA2
  ------ inclusion threshold ------
      0.037   13.4   0.1       0.08   12.3   0.0    1.5  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.053   13.4   0.2       0.24   11.3   0.1    1.9  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.0   4.5e-66   1.3e-62       2     264 .]     124     383 ..     123     383 .. 0.92

  Alignments for each domain:
  == domain 1  score: 211.5 bits;  conditional E-value: 4.5e-66
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS..CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk..hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 e l +lGeGs+++Vy ++ ++tg+++A+K+i+k + k  ++  ++l+E + l +l   hp ivrl  +f+++ +l++vl+++++gel+++++r gsls 
  CDO69253.1 124 EFLDELGEGSYSTVYHGRLRATGQEYAIKRIDKAHLKRHQKeATALAEKNTLVRLGsgHPGIVRLHWTFQDEWSLFFVLDLARNGELQTRISRMGSLSI 222
                 67899****************************99887777699***********999***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp 195
                 e ++ + +qi+ +l y+Hskg+iHrDlKpeN+L+d+   +KitDFG  k l+s+ + +++fvgt +Y++PE+l++ne sk++D W+lG+i+y++++g+ 
  CDO69253.1 223 ECVRYYSAQIVDALGYMHSKGVIHRDLKPENLLLDDAFRIKITDFGTGKILDSGGEpTKTFVGTAQYVSPELLEHNESSKSSDFWALGCIIYQMIAGRF 321
                 ***********************************8888**************9998****************************************** PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.........HHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.........aeellqhpyl 264
                 +f+   g +  +++++q            +++  ++ ++++a+dl++kll +dp +Rl+         ++ l +hp++
  CDO69253.1 322 VFR---GLS-DWQKIKQ------------LEYSFPEGFDDQAQDLIRKLLVRDPDQRLGagppgspwdMDALRNHPFF 383
                 ***...333.3446666............6789999**********************96666666666666666665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   4.4e-33   1.3e-29       2     249 ..     124     362 ..     123     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 4.4e-33
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS..-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkkl..khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  e+ ++lGeG++++V++g+l+     + ++ a+K +++ + +++  ++  l e +++ +l   hp iv+l+    +e +l++v++++++G+L++ + + 
   CDO69253.1 124 EFLDELGEGSYSTVYHGRLR----ATGQEYAIKRIDKAHLKRHqkEATALAEKNTLVRLgsGHPGIVRLHWTFQDEWSLFFVLDLARNGELQTRISRM 217
                  67889***************....888999****9765544441145567799999999888***********************************8 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGv 193
                     +l+++ +  +++q+ +++ y++sk ++Hrdl   N Ll++   +ki+DfG  + +  d+  + +++     ++++pE l++++ +++sD W+ G 
   CDO69253.1 218 --GSLSIECVRYYSAQIVDALGYMHSKGVIHRDLKPENLLLDDAFRIKITDFGTGKIL--DSGGEPTKTFVGTAQYVSPELLEHNESSKSSDFWALGC 311
                  ..9***************************************************9999..77777788888999************************ PP

                  HHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 194 llwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +++ ++  g+  ++gl++ + +++l+     + pe   ++ ++l++k + +dp++R
   CDO69253.1 312 IIYQMIA-GRFVFRGLSDWQKIKQLEY----SFPEGFDDQAQDLIRKLLVRDPDQR 362
                  ******9.********99998888864....4566666666666666666666666 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.8e-10   5.3e-07     130     287 ..     209     361 ..     201     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.8e-10
  Kinase-like 130 vlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggfta...Lvragtkvvlseve.kgfaPpEllgsrggytrkn 223
                  +lq r ++  +l + +  +  +q++    ++++kg++h +++++nllld  +++++++f+    L   g+  +   v  + +  pEll +        
   CDO69253.1 209 ELQTRISRMGSLSIECVRYYSAQIVDALGYMHSKGVIHRDLKPENLLLDDAFRIKITDFGTgkiLDSGGEPTK-TFVGtAQYVSPELLEH-------- 297
                  789999999*************************************************975332333344444.4444477889999987........ PP

  Kinase-like 224 ktkmthkldaWqlGlviyriwclklPlt.lateeakeewkfklckkipekvkaLlkkfLqlsqed 287
                    +++ + d W+lG  iy + +    +  l   + +++ +++  +   ++ + L++k+L ++ ++
   CDO69253.1 298 -NESSKSSDFWALGCIIYQMIAGRFVFRgLSDWQKIKQLEYSFPEGFDDQAQDLIRKLLVRDPDQ 361
                  .3578899**********98776655541333333344477777788888888888888777665 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00019      0.56      22      60 ..     121     161 ..     112     178 .. 0.71
   2 ?    4.1   0.0      0.01        31     179     204 ..     230     255 ..     222     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
        FTA2  22 kdiefleyLgkglhsiVl..kvkirgkeYALKlFrfleaee 60 
                 +d+efl+ Lg+g  s V+  + +  g+eYA+K   + + + 
  CDO69253.1 121 DDFEFLDELGEGSYSTVYhgRLRATGQEYAIKRIDKAHLKR 161
                 69***************9334566789*****544443333 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
        FTA2 179 pkllrdlkklhklgIvvrDlkeenyi 204
                  ++++ l  +h+ g+++rDlk+en++
  CDO69253.1 230 AQIVDALGYMHSKGVIHRDLKPENLL 255
                 578889999**************986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.1   6.2e+03      35      68 ..     145     178 ..     134     180 .. 0.71
   2 ?   12.3   0.0   2.7e-05      0.08     125     166 ..     230     267 ..     198     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
         Kdo  35 yyrggllgklskdlyrfklgrtravrEfrllkrL 68 
                       ++++ k ++ +  ++++a +E + l rL
  CDO69253.1 145 TGQEYAIKRIDKAHLKRHQKEATALAEKNTLVRL 178
                 4555567788888888888888888888888776 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
         Kdo 125 kavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  ++  +   +h+ gv H+dl + n+ll+ +     +i + D+
  CDO69253.1 230 AQIVDALGYMHSKGVIHRDLKPENLLLDDAF----RIKITDF 267
                 567777889******************9987....7777777 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.5   1.5e+03       4      40 ..     128     166 ..     126     203 .. 0.71
   2 ?   11.3   0.1     8e-05      0.24     165     193 ..     241     267 ..     229     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.5
                 EE--.SSCEEEEEEETT.-.-EEEEEE-TTS-HHHHHHH CS
         APH   4 elsggasnrtylvttpa.g.ryvlrrnpparaaeeirre 40 
                 el+ g ++ +y+    a g +y+ +r+ +a+++++  + 
  CDO69253.1 128 ELGEGSYSTVYHGRLRAtGqEYAIKRIDKAHLKRHQKEA 166
                 678899999999888886579**9999888444443333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDf 193
                 +++++H+Dl+p Nll+d d  r+  + Df
  CDO69253.1 241 SKGVIHRDLKPENLLLD-DAFRI-KITDF 267
                 6789*************.76776.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5061.08
//
Query:       CDO69254.1  [L=185]
Description: hypothetical protein BN946_scf185042.g156 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-13   49.0   0.1      6e-13   48.3   0.1    1.3  1  ACT       ACT domain
    6.1e-07   29.2   0.1    9.2e-07   28.6   0.1    1.3  1  ACT_5     ACT domain


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   6.6e-17     6e-13       1      65 [.     104     168 ..     104     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 6.6e-17
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                 +vl+++v+++PG+L+rv+g+la rg+Nids+ + ++e +  +++ +v+ + + ++e++ ++l++l
  CDO69254.1 104 HVLNCLVQNEPGVLSRVSGILAGRGFNIDSLVVCRTEIRDLSRMCIVLRGQDGVVEQARRQLEDL 168
                 79************************************************************987 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1     1e-10   9.2e-07       2      54 ..     113     166 ..     112     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1e-10
       ACT_5   2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQle 54 
                 +pgvL Rv +++  rgF+++sl++ +te  + +r+ ++ ++ +  ve+ ++Qle
  CDO69254.1 113 EPGVLSRVSGILAGRGFNIDSLVVCRTEIRDLSRMCIVLRGqDGVVEQARRQLE 166
                 79***************************************999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1359.89
//
Query:       CDO69255.1  [L=858]
Description: hypothetical protein BN946_scf185042.g157 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-23   82.5   0.0    2.1e-22   79.7   0.0    2.4  2  COG5      Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   1.2e-26   2.1e-22       3     132 .]       7     160 ..       5     160 .. 0.93
   2 ?   -0.9   0.0     0.098   1.8e+03      30      91 ..     566     629 ..     556     631 .. 0.68

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 1.2e-26
                 XXXXXXXXXXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5   3 FLepdFdpksfanallk...............atnnnddteldlstplkrlnydiqeldkrlrq.........litsnhleLlehlskskslssvlsel 77 
                 F  pdFdp+++ana+l                +  +   +++d+s++++++++ +++++k++++         ++t++h++Ll ++   + l+++l ++
  CDO69255.1   7 FAHPDFDPNDYANAILAgepyppqagkakpaaKSTGLAPASEDVSVAISKITFSLDDVEKQIKNvlgncgpsaQVTTHHEDLLVRAAGVSDLEGSLGSV 105
                 889************************99986666778899*********************8644444444489************************ PP

                 XXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  78 ksslesLsasyerlkskvlepyeeaeklqsalkrlhqtldLlrralrflhlskqL 132
                 ++ l++L  s+e+l+ k+  py+++ +++s+l+rl+q++d+lrr++rf++l+++L
  CDO69255.1 106 RTGLNELDGSLEKLRVKIRVPYQSLHTHVSRLERLQQASDILRRTARFVNLARRL 160
                 *****************************************************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.098
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX.XXXXXXXXXXXXXXXXXXX CS
        COG5  30 dlstplkrlnydiqeldkrlrqlitsnhleLlehlsks.kslss.vlselksslesLsasyerl 91 
                 +l+t+l  + + +++l++++ + ++s  +++l++l++   +  + vls ++ +l ++ a + r+
  CDO69255.1 566 SLATCLYHCWSRLDKLREEYPESVVSILQPVLTKLRDTfDKIVDpVLSAIRRELGAIIAKLHRM 629
                 5667777777777777777777777777777777766523334458888888887777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5909.52
//
Query:       CDO69256.1  [L=127]
Description: hypothetical protein BN946_scf185042.g158 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 885.77
//
Query:       CDO69257.1  [L=216]
Description: hypothetical protein BN946_scf185042.g159 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.1    6.2   5.6        7.2    5.7   5.6    1.1  1  DUF4106   Protein of unknown function (DUF4106)


Domain annotation for each model (and alignments):
>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.6    0.0004       7.2     153     200 ..     153     201 ..     141     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0004
     DUF4106 153 aggtyipaggtyilavgiyippnppreapapglpktfts.shghrhrha 200
                  g     agg  +l  g y pp        pg  +  +s s gh h h 
  CDO69257.1 153 QGYGTTTAGGGVLLPDGQYAPPGSTVIITKPGRSRRHSSsSSGHHHHHH 201
                 454556799999999*****************99887651567766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1601.44
//
Query:       CDO69258.1  [L=424]
Description: hypothetical protein BN946_scf185042.g160 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-05   25.0   9.1    2.9e-05   24.1   9.1    1.5  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.24    9.9   0.0       0.33    9.5   0.0    1.1  1  GshA      Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   9.1   3.2e-09   2.9e-05       1      38 [.      38      76 ..      38      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 3.2e-09
                SS-HHHHHCT---ST..SSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCda..kkPaCsnCkklnleCtfysessk 38
                ++Cd+Cr kK+KC +    ++C  C   +  C+ y+++ +
  CDO69258.1 38 TSCDHCRIKKIKCIQhpTSGSCEACHAASISCQ-YRDREQ 76
                69************9888888************.998876 PP

>> GshA  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   3.7e-05      0.33     182     223 ..     340     383 ..     325     406 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 3.7e-05
                 -TTGGGS-..TTHHHHHHHHHHHHHHHHHT--GGGG---EEEEE CS
        GshA 182 eaGWatRr..KskhfkaYeevakefaklididpwlinplfekce 223
                  + Wa+R+  K++ f++Y+++++++a ++di p  +  l+++++
  CDO69258.1 340 LLAWAERKrgKQESFAQYAAISRRLAMELDITPLSLPRLTQSMD 383
                 46788766448999*******************99988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2971.23
//
Query:       CDO69259.1  [L=443]
Description: hypothetical protein BN946_scf185042.g161 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-16   59.7  19.3    1.1e-15   57.8  11.6    2.0  2  TPT       Triose-phosphate Transporter family
     0.0053   16.0  18.0      0.016   14.4  17.9    1.8  1  PUNUT     Purine nucleobase transmembrane transport
     0.0095   16.1  39.8      0.022   14.9  13.2    3.0  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
      0.019   14.2  18.0      0.034   13.3  18.0    1.5  1  UAA       UAA transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   1.1   0.00056       2.5       4      39 ..      54      93 ..      51      97 .. 0.83
   2 !   57.8  11.6   2.4e-19   1.1e-15      68     289 ..      96     320 ..      90     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00056
         TPT  4 gllfllWYllnvvfnilnKkilnvf....pyPltvsavql 39
                +l+++ W+++ ++  ++nK +++      p Pl+v+++++
  CDO69259.1 54 ALFIASWFFFATLISVYNKWMFSPEhygfPSPLFVTTIHI 93
                577899****************86433448999***9987 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 2.4e-19
         TPT  68 ilplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKk 166
                  +p +++  l   ++++sl+ ++ Sf  + K+s  +F  +++ ll  e++s+ ++  ++ i +Gv l  +tE +F l+gf+  +++     lr  +   
  CDO69259.1  96 AVPTGITTGLDIGFSNLSLKIITLSFYTMCKSSSLVFVLLFAFLLRLETFSFRLVGVIILICVGVLLMVATETHFVLSGFLLVTSASALGGLRWSLTQL 194
                 566667777777789***************************99999*************************************999999*******99 PP

         TPT 167 llkklkd....ldalnlfaiitilslllllPvallveg.vlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvI 260
                 ll++ k+      a +lf +  i+++ l++ ++llv+g  + +  ++ st  ++ ++l+ l++ g+l +      + +++r   v  s+a  +K v  I
  CDO69259.1 195 LLRS-KNmgmsNPAATLFWLAPIMGITLSV-TSLLVDGwSKIFGGHFFSTPGETVKTLFFLFCPGILAFCMVLSEFYIIQRAGVVPMSIAGIAKEVTTI 291
                 9999.7755333345677778888888777.67899995566677777775567899999*************************************** PP

         TPT 261 vlsvlvfknpvsllnaiGtavaivGvflY 289
                 + +  +f++++++ln+ G+a++ +G+ lY
  CDO69259.1 292 ICAAWFFGDELTPLNITGVAITACGIALY 320
                 ***************************** PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  17.9   3.7e-06     0.016      73     320 ..      91     328 ..      61     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.7e-06
       PUNUT  73 klvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdkpaeeskkkyvigfiltla 171
                  ++  ++  G+ +++d  ++ l l+ + +s +++  +++L+F  +f++l+    f +  +  ++l+ ++  l++          ++++  + gf+l+  
  CDO69259.1  91 IHIRKAVPTGITTGLDIGFSNLSLKIITLSFYTMCKSSSLVFVLLFAFLLRLETFSFRLVGVIILICVGVLLMV---------ATETHFVLSGFLLVTS 180
                 4555678899*********************************************9888888888887777766.........233367788******* PP

       PUNUT 172 asllfaLlLslvellfekvlkketfslvlemqivlslvatvvcvvGllisGefkelkkeaeeFkkGkslYvlv.lvgsavswQvlavGavgLvflvSsl 269
                 as+l +L  sl++ll ++    ++  ++  +  ++ ++  +++v  ll+ G + ++ +     + G+++ +l  l    +    +++    ++  +  +
  CDO69259.1 181 ASALGGLRWSLTQLLLRSKNMGMSNPAATLFW-LAPIMGITLSVTSLLVDG-WSKIFGGHFFSTPGETVKTLFfLFCPGILAFCMVLSEFYIIQRAGVV 277
                 ****************9988777766665554.455667778999999988.77777766666789996665505556777777777777777777666 PP

       PUNUT 270 fsnvistvllpvvsvlavilfrdkfsavkgvalllailgfasYvYgeyksk 320
                    +  ++    + + a  +f d+++   +  ++++  g+a Y+Y++y+++
  CDO69259.1 278 PMSIAGIAKEVTTIICAAWFFGDELTPLNITGVAITACGIALYTYHKYTKS 328
                 6666666666667778999999*************************9875 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0  18.6    0.0057        25      73     136 ..     101     164 ..      44     165 .. 0.79
   2 !   14.9  13.2   4.9e-06     0.022       3     135 ..     174     320 ..     172     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0057
        EamA  73 lgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 + t l  ++ + +lk ++ s+ +++ s + vf+l++++ll  e+++++ +  i+li +Gvll++
  CDO69259.1 101 ITTGLDIGFSNLSLKIITLSFYTMCKSSSLVFVLLFAFLLRLETFSFRLVGVIILICVGVLLMV 164
                 466666788999**************************************************97 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.9e-06
        EamA   3 gillallaalfwaiyfvlskillrkv.....spltltfvrfliagillliiallkegkl..........aklslkdwllllllgllgtvlafllffyal 86 
                 g ll+  a+ + ++ + l++ llr+      +p +++f+   i gi l++++ll +g+           +  ++k +++l+  g+l+++++ l  fy +
  CDO69259.1 174 GFLLVTSASALGGLRWSLTQLLLRSKnmgmsNPAATLFWLAPIMGITLSVTSLLVDGWSkifgghffstPGETVKTLFFLFCPGILAFCMV-LSEFYII 271
                 6677777777777777777777666555777999**************9996665555545566544333335555666666676666666.99***** PP

        EamA  87 kktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++ ++   s++     v t+i++++++g  lt + + g+++  +G++l 
  CDO69259.1 272 QRAGVVPMSIAGIAKEVTTIICAAWFFGDELTPLNITGVAITACGIALY 320
                 **********************************************996 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  18.0   7.6e-06     0.034      68     301 ..      99     323 ..      49     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-06
         UAA  68 lvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallld 166
                 + +++ +  + +n +lk  i + + ++ +ss+l+ v++   l+   ++s++ + +++l+++Gv ++         +    ++ + l G++l++ a +l 
  CDO69259.1  99 TGITTGLDIGFSNLSLKI-ITLSFYTMCKSSSLVFVLLFAFLLRLETFSFRLVGVIILICVGVLLMVA-------T----ETHFVLSGFLLVTSASALG 185
                 55566666678999****.********************************************99988.......2....35789************** PP

         UAA 167 avlglvqeklykky..gkhsk.ealfyshllslpl.flllqgellsavkflsesedval.lslpsklfylllnvltqyvcikgVlilisefgaltvtlv 260
                 ++   +++ l +    g+++   +lf   l +++  +l +++ l++ + +++  + ++   +  ++lf l++  ++++  + + ++ i++ g   +++ 
  CDO69259.1 186 GLRWSLTQLLLRSKnmGMSNPaATLFW--LAPIMGiTLSVTSLLVDGWSKIFGGHFFSTpGETVKTLFFLFCPGILAFCMVLSEFYIIQRAGVVPMSIA 282
                 *97666666655440144443355554..344443044677788889998888888877666778899999999999999999**************** PP

         UAA 261 ltlRKfvslllSillFknpltlqhlvgtllVflglllysyv 301
                   +  + +++   ++F+ +lt   ++g+++   g++ly+y 
  CDO69259.1 283 GIAKEVTTIICAAWFFGDELTPLNITGVAITACGIALYTYH 323
                 **************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2933.56
//
Query:       CDO69260.1  [L=322]
Description: hypothetical protein BN946_scf185042.g162 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-56  189.7   0.0    8.1e-56  189.1   0.0    1.3  1  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 
      1e-16   60.5   0.4    2.7e-16   59.2   0.4    1.8  1  UCH_C          Ubiquitin carboxyl-terminal hydrolases


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1   0.0     9e-60   8.1e-56       1     210 [.      10     211 ..      10     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 189.1 bits;  conditional E-value: 9e-60
                    ---EE--HHHHHHHHHHHT--S..EEEE--S.SHHHTTS.---EEEEEEE.----------.---------..T...TS------STTGHHHHHHH CS
  Peptidase_C12   1 wlplEsdPevftelleklGvkgvqfeevyslddellasl.pvyglillfkyieeeeeeeerekeeeekdeeeeevsekvfFakQtiqnaCgtiAlL 95 
                    w   EsdP+vftell+ lGv+ v + ++ysld+e+la+l pv++li+lfk++  +++e +   + +++d e        fFa+Q+++naC+t+A+L
     CDO69260.1  10 WQLTESDPGVFTELLKTLGVPLV-VDDLYSLDAEALAELqPVHALIFLFKWVGGQSNEPS---SGGQYDPEF-----PGFFAHQVVNNACATLAVL 96 
                    8889****************987.9******9999999978***********87733333...333444443.....46***************** PP

                    HHHHH..STS--.-TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC........---SSTHH.....HHS--EEEEEEEEETTEEEEE-T CS
  Peptidase_C12  96 hvllNlekeaeeielgseLkkfkeftkelspeergealenseeireahnsfa......segqteapee.....eedvafHFiafvpvngklyeLDG 180
                    +++ N++     +++g++L+++++ft++++p++ g a+++s+ +reahn+++             +       +ed a+HFi +vp  g++yeLDG
     CDO69260.1  97 NAIGNIP----GLKMGPQLSELLSFTAGMDPQTSGMAITSSDWLREAHNALSppsaisL------EGLdlpktTED-AYHFIVYVPYAGSVYELDG 181
                    *****98....88***************************************6655542......22244443677.9****************** PP

                    TS.S-EEEEE--T..TTHHHH.HHHHHHHT CS
  Peptidase_C12 181 lkegPidlgeveeeeedledavrkviqeri 210
                    l+++P+++g+++e +e + +++r+viq+ri
     CDO69260.1 182 LRQAPVKHGAYSEGGEGWVAKAREVIQARI 211
                    ***********9999***9999******98 PP

>> UCH_C  Ubiquitin carboxyl-terminal hydrolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.4     3e-20   2.7e-16       3      46 .]     252     295 ..     250     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 3e-20
       UCH_C   3 eleakLeeEeeKrerwkeENaRRrHNYlPFIvelLkaLaekgkL 46 
                 el  kL +E++Krerw+ EN++R+HNYl+FI++lL  +a++gkL
  CDO69260.1 252 ELMVKLSNENAKRERWAFENSLRKHNYLGFIHALLLNMAKAGKL 295
                 56679**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2414.35
//
Query:       CDO69261.1  [L=737]
Description: hypothetical protein BN946_scf185042.g163 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.4e-112  375.5  44.7   4.1e-112  375.2  44.7    1.0  1  AA_permease    Amino acid permease
    5.1e-32  111.2  51.4    6.6e-32  110.9  51.4    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.2  44.7  4.6e-116  4.1e-112       2     469 ..     198     648 ..     197     654 .. 0.95

  Alignments for each domain:
  == domain 1  score: 375.2 bits;  conditional E-value: 4.6e-116
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v +ia++g iGtglf+g+g  l+q+Gp+++l++y+++g++++++ l lge+at +p++g+f++ya+rf +p+ Gf+ ++ny+f++++ +a +ltaa+ 
   CDO69261.1 198 VSMIAIAGTIGTGLFLGTGRSLAQGGPASMLICYAVVGFIVYITLLLLGEMATQYPVAGSFNAYATRFFSPSYGFALSWNYWFNDAVSVASDLTAAQL 295
                  88************************************************************************************************ PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  ++q+w   t  + +wv++++f+v+l+++n + v++yge e++la++k++++++fii+gi++++gg++++++ g+++++ +g+     +++g       
   CDO69261.1 296 VLQYW---TTWH-TWVISLIFWVFLVTVNSIHVRAYGELEYWLASLKVVTVVIFIILGIVVNVGGNQAHEYiGGKNWQIPGA----PFVGG------- 378
                  *****...6666.9********************************************************************....*****....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   f +f+ vfv+++fa+ G+e+++i+agE+k+P++++P+++++v++ri++fY+ls+ll+gl vp+n++gl n+  ++ spf i+++++g+ v+++++n 
   CDO69261.1 379 -FGGFARVFVTASFAYGGTESLGITAGETKNPSRNMPRVVKFVFWRILLFYILSILLMGLNVPYNYPGLSNKQTTT-SPFTIVFQMAGSTVAGSFMNT 474
                  .**********************************************************************98888.********************* PP

  AA_permease 295 viltaalssansslysasRvlyslakdg..laPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaligl...ivwlliilsy 387
                  vilt++ls++n +l++++Rvly la      aP+++++ +++gvPl a+l+++ +s l++  + + ++    + +l +i+++++    i wl+i l++
   CDO69261.1 475 VILTSVLSAGNHALFAGTRVLYGLATTTppQAPTFFGRTTRSGVPLLALLATSSVSILCFGSSFIGSG--ALWGWLQNIVGVSNQasnIAWLSIGLAS 570
                  *************************98655899***************************66666666..9***********98533389******** PP

  AA_permease 388 lrfRkalkyqgrsieelgfka.allplgvilvlaal.iiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklh 469
                   +fR+a+  qgr ++el+f+a ++ p+g+++v++ +  +il+++++  +++      ++ a++f+++y+ +++++++++++++ 
   CDO69261.1 571 WKFRRAWISQGRPLSELKFRArWTWPWGPYFVVITVtALILTVQGWSSIFP------KFTAVDFVSFYIEIPVMIVMYLAWMIL 648
                  *******************9747899**99987665157889999**9999......99********************99875 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9  51.4   7.4e-36   6.6e-32       4     423 ..     196     639 ..     193     642 .. 0.81

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 7.4e-36
  AA_permease_2   4 lsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasils 97 
                    +++ +++i  +ig+g f  +  ++a ggpa++l+   +v+ ++++ ll++ E+++  p  g    y+ ++f++  +f  +w +wf  ++++ ++  
     CDO69261.1 196 RQVSMIAIAGTIGTGLFLGTgrSLAQGGPASMLICYAVVGFIVYITLLLLGEMATQYPVAGSFNAYATRFFSPSYGFALSWNYWFNDAVSV-ASDL 290
                    688999************99999999****888777666666689*********99*********************************99.5555 PP

  AA_permease_2  98 vaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgv... 190
                     aa+  l+ +      +tw+t +i  ++ ++++++n+++++ ++ +  +l+ lk+ ++++i+iilg+++  gg +  +   +++++  g p+v   
     CDO69261.1 291 TAAQLVLQYW------TTWHTWVISLIFWVFLVTVNSIHVRAYGELEYWLASLKV-VTVVIFIILGIVVNVGGNQAHEYIGGKNWQIPGAPFVggf 379
                    5666666656......689************************************.6999999999999766666555666678999999986665 PP

  AA_permease_2 191 ...llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei..anlsnlgsvaalffeavggkvvaiivvil 279
                       ++++ ++ ++++G es    + e k+  +++p++  +++  +l++y+l  +++   vp ++   +n +++ s+++++f+++g++v+ ++++ +
     CDO69261.1 380 ggfARVFVTASFAYGGTESLGITAGETKNpsRNMPRVVKFVFWRILLFYILSILLMGLNVPYNYPglSNKQTTTSPFTIVFQMAGSTVAGSFMNTV 475
                    555778899*****************888879*******************9777777888877644555668889*********99********* PP

  AA_permease_2 280 ialsllgaintavigssrvlealard..gvlPrffakvnkfgspiraiiltaivslillllfllassaayn....fllsvsslgliisyllliiga 369
                    i  s+l a+n a+++ +rvl+ la+      P+ff ++ + g p+ a+  t  vs il++ ++++ s a+      ++ vs+ +++i +l + ++ 
     CDO69261.1 476 ILTSVLSAGNHALFAGTRVLYGLATTtpPQAPTFFGRTTRSGVPLLALLATSSVS-ILCFGSSFIGSGALWgwlqNIVGVSNQASNIAWLSIGLAS 570
                    ************************98444566***********************.6666777777677667666888888888888888888888 PP

  AA_permease_2 370 lilrkkrphlkr..............pgkilvaiigalfllfllvalf..fppkgpatqssliyt.iiltv 423
                    ++ r+    ++r              +g + v+i+ + ++l +    +  + pk  a+ + ++y  i +++
     CDO69261.1 571 WKFRRAWISQGRplselkfrarwtwpWGPYFVVITVTALILTVQG--WssIFPKFTAVDFVSFYIeIPVMI 639
                    888877445566566666555443333333444444444444444..355778888888888887755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 4138.43
//
Query:       CDO69262.1  [L=303]
Description: hypothetical protein BN946_scf185042.g164 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.0   1.2       0.34   11.0   1.2    1.5  1  IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-termin


Domain annotation for each model (and alignments):
>> IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   1.9e-05      0.34      10      30 ..     235     255 ..     230     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
    IFP_35_N  10 iqLkeeiqkLeaELQettref 30 
                  + +eeiq L aELQ+t++  
  CDO69262.1 235 EEAEEEIQALKAELQKTKKRQ 255
                 56789************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1627  (0.0907468); expected 358.6 (0.02)
Passed bias filter:                      897  (0.0500307); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2076.97
//
Query:       CDO69263.1  [L=591]
Description: hypothetical protein BN946_scf185042.g165 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-91  305.4   0.1    9.2e-91  305.0   0.1    1.1  1  FAD_binding_2  FAD binding domain
    2.6e-24   85.2   0.0    9.7e-24   83.3   0.0    2.0  2  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
    9.4e-13   48.5   0.3    4.5e-12   46.2   0.3    1.9  1  DAO            FAD dependent oxidoreductase
    1.2e-10   41.1   0.1    1.6e-08   34.2   0.1    2.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.7e-10   40.3   0.3      2e-09   37.5   0.1    2.5  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    3.4e-09   36.6   0.1    5.5e-09   35.9   0.1    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
    1.1e-06   28.2   0.1    1.9e-06   27.4   0.1    1.4  1  FAD_binding_3  FAD binding domain
    2.6e-06   26.8   1.3    8.1e-05   21.9   0.5    2.8  3  GIDA           Glucose inhibited division protein A
    4.5e-06   25.6   3.0    8.3e-05   21.5   0.3    2.9  3  HI0933_like    HI0933-like protein
      2e-05   24.1   0.2     0.0027   17.1   0.2    3.0  2  Amino_oxidase  Flavin containing amine oxidoreductase
      9e-05   21.8   1.2      0.024   13.9   0.6    2.4  2  Thi4           Thi4 family
    0.00014   21.2   0.5    0.00025   20.4   0.5    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    0.00038   19.8   0.0       0.13   11.5   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0021   17.2   0.1      0.013   14.5   0.1    2.0  2  Lycopene_cycl  Lycopene cyclase protein
     0.0023   17.9   0.2       0.87    9.6   0.1    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
     0.0073   16.9   0.4      0.039   14.5   0.1    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.027   14.9   0.0      0.057   13.9   0.0    1.6  1  NAD_binding_7  Putative NAD(P)-binding
       0.15   11.9   0.3        0.5   10.2   0.2    1.8  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.19   10.4   0.1       0.35    9.6   0.1    1.4  2  MCRA           MCRA family


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0   0.1   9.8e-94   9.2e-91       2     417 .]       4     441 ..       3     441 .. 0.91

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 9.8e-94
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeLe 97 
                    viV+G+GlAGL+AA+++ e+G++v++++k + +gg+++ +  gi+ +++++q+++gi ds +l ++dt  +++ela  +l+++++ ++++av++L+
     CDO69263.1   4 VIVVGGGLAGLSAAHTLLERGANVLLLDKQPFMGGNSTKATSGINGAGTQTQQELGIPDSSKLFFEDTKRSARELARDDLIRVLTGRSGDAVNWLQ 99 
                    9*********************************************************************************************** PP

                    HT.T----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT......EEEEESEEEEEEEECTT.EEEEEEEEETTTT CS
  FAD_binding_2  98 el.gvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag......vdfqerteadeLivedg.rvtGavvenpesg 185
                    ++  +++s+       v++lGg+s++ rt++++a+       +g  + ++ +e++++++      v++  ++++ +Li +d   v G++ +  ++g
     CDO69263.1 100 DKfQLDLSK-------VARLGGHSQP-RTHRGNAQF------PGMVITYAQMERLEDLAesipdrVKIKKKARVIQLIKDDSgAVIGVEYS--HNG 179
                    997778888.......**********.****99998......66666666666666655566699**************8666*****999..999 PP

                    CEEEEEES.EEEE-----GG...............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB...B--THHHH CS
  FAD_binding_2 186 revrirak.avvlatgGfgr.....allkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi...Litealrg 272
                    +++   a   v+latgG+ +     +llk++++++ +  ttn +++tGdg+++al+ ga+  d  +e+vq hPt+lv++ ++ +    L  ealrg
     CDO69263.1 180 KTES--AYgPVILATGGYAAdftsdSLLKKYRPELWDLPTTNGEHCTGDGQKMALAIGANAVD--LEKVQVHPTGLVDPNEPDAKvkfLAAEALRG 271
                    9885..777***************************************************999..************87776666799******** PP

                    TT-EEE-TTSSBTHGGGS-HHHHHHHHH.HHHHTTTS.....CCBEEEE-TT...............................SSHHHHHHHSHHH CS
  FAD_binding_2 273 eGgilvdkdGrrFmnelasrdvvsrailekeiaeggs.....eanvyldash..............................gldaegleatleai 333
                     Gg+l+d++G+rF+ el++rd v+ +++ +  + + +     +        +                              g+++e l++t++++
     CDO69263.1 272 VGGLLLDNTGKRFVDELQHRDYVTGKMW-ENGKFPIRlvlngQ--------AskdiewhckhyvgrglmkrfengealakeiGIKPEELKKTFDEY 358
                    ****************************.66667777445551........34455555555********************************** PP

                    HHHHHHCCT......S-TTTSEEE........EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 334 neeaangldkdfgrgidpadrpip.gpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    ne ++++ d +fg+++ +  ++++   f  + ++p  hytmgG+e+d+++rvld++g+pipGL+AaGeva ggvhganrlgG+sl
     CDO69263.1 359 NEVVRTKKD-PFGKKFFAPGEWKMdDVFNVAIMTPVLHYTMGGLEIDPESRVLDKSGKPIPGLFAAGEVA-GGVHGANRLGGSSL 441
                    ******888.***********9995556666666777*********************************.************98 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.4   6.1e+03      28      44 ..     320     336 ..     317     342 .. 0.73
   2 !   83.3   0.0     1e-26   9.7e-24       1      73 [.     518     589 ..     518     590 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.4
                 TCCCSTTCSHHHHTTTT CS
      Cyt-b5  28 flskhpGgesailkyaG 44 
                 + +kh +g+++++++ +
  CDO69263.1 320 WHCKHYVGRGLMKRFEN 336
                 66566699999998876 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 1e-26
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73 
                 tlee++khn+k+d+wv+i+gkV Dv++fl +hpGge+ail yaG+Date+f+   h++k++ ++  + ++G+l
  CDO69263.1 518 TLEEVQKHNKKDDCWVIIDGKVLDVTNFLPDHPGGEKAILLYAGRDATEEFNML-HDPKVIPRYAPDAVIGTL 589
                 78****************************************************.****99999888999987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.3   4.7e-15   4.5e-12       2     211 ..       4     206 ..       3     228 .. 0.67

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 4.7e-15
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHH.HHHHHH.HHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlsl.ealeel.releeelgididyrrtGllslaadeeel 96 
                 v+++GGG +Gls+A+ L +rg  V+ll+k+++ g g S +++  + ++   ++ +    +l   ++ +++ ++  ++ +   ++ r  l+ + +++ + 
  CDO69263.1   4 VIVVGGGLAGLSAAHTLLERGanVLLLDKQPFMG-GNSTKATSGINGAGTQTQ-Q----ELGIpDSSKLFfEDTKRS-A--RELARDDLIRVLTGR-SG 92 
                 9*****************************9999.888888878877654233.2....444444444443555544.3..345666777777654.36 PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT.ST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHT..T-EEEESECEEEEEEEE.TCEEEEE...EECT CS
         DAO  97 ealdkllallleagldaelldaeevrelepa.lp.gllgalfypdtgqvdpakltaalaraaeal..Gveilegtevtgleeed.gkvwgve...rttp 187
                 +a+ ++l++   + ld   l++  v++l  +  p  ++g   +p+   v +++ +  l + ae+    v+i ++++v  l ++d g v gve   +   
  CDO69263.1  93 DAV-NWLQDK--FQLD---LSK--VARLGGHsQPrTHRGNAQFPG--MVITYAQMERLEDLAESIpdRVKIKKKARVIQLIKDDsGAVIGVEyshN--- 178
                 666.777763..3333...444..444444332324567788888..667777888888887775446***********745445******87532... PP

                 EEE.EEEEEEEE--GGGHH.HH.HTT.C CS
         DAO 188 gen.daadavVnaaGawsd.ll.gll.k 211
                 g + +a+  v++a+G ++  ++ + l k
  CDO69263.1 179 GKTeSAYGPVILATGGYAAdFTsDSLlK 206
                 655356666********98655433333 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   1.7e-11   1.6e-08       2     116 ..       3     201 ..       2     209 .. 0.82
   2 ?    3.5   0.0     0.038        35     248     280 ..     399     429 ..     387     438 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.7e-11
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH.HCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll.skallgvaedaeias......................................... 57 
                  +v+v+GgG AGl+aa+tl + ga+v+l+ +++ +++g     ++ + g++ ++++++                                         
   CDO69263.1   3 QVIVVGGGLAGLSAAHTLLERGANVLLL-DKQPFMGGNSTKaTSGINGAGTQTQQELgipdssklffedtkrsarelarddlirvltgrsgdavnwlq 99 
                  79**************************.7777777766653668888888888777***************************************** PP

                  ..........................................HHHHCHHHHCCCCHCCTCEEEEESC.EEEEETEEECTCEEEEEESEEEE---EEE- CS
                  ..........................................xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ..........................................evvkklnqgielllgeevvkidpgk.kkvklekkkegdeekiaydklvlAtGsspr 112
                                                            +  +++   ++  +++ v++++++  + v   + + + +++ ay+ ++lAtG+ + 
   CDO69263.1 100 dkfqldlskvarlgghsqprthrgnaqfpgmvityaqmerleDLAESIPDRVKIKKKARVIQLIKDDsGAVIGVEYSHNGKTESAYGPVILATGGYAA 197
                  ************************9999999999966666654444555555555555566665555455555555558889************9999 PP

                  BCTC CS
                  xxxx RF
  Pyr_redox_2 113 dlgi 116
                  d++ 
   CDO69263.1 198 DFTS 201
                  8865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.038
                  CT-EEEETTEEE--TTSBESSTTEEE-GGGCTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 248 lglelderggivvdeflrtnvpgiyaiGDvagg 280
                   gle+d+  ++  d++++  +pg++a+G vagg
   CDO69263.1 399 GGLEIDPESRV-LDKSGKP-IPGLFAAGEVAGG 429
                  56666555544.5666644.***********43 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   2.1e-12     2e-09       1      40 [.       6      45 ..       6      67 .. 0.90
   2 ?   -1.3   0.0       2.8   2.7e+03      28      43 ..     109     125 ..     106     144 .. 0.69

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.1e-12
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40
                   +vG+Gl+Gl+aA++L ++g++vlll+k++  GG+++ ++ 
     CDO69263.1  6 VVGGGLAGLSAAHTLLERGANVLLLDKQPFMGGNSTKATS 45
                   8**********************************98876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.8
                    SSSSSGGG-EECETT.C CS
  NAD_binding_8  28 rdrlGGraasyevpg.v 43 
                      rlGG+++ +++ g  
     CDO69263.1 109 VARLGGHSQPRTHRGnA 125
                    5799***9999885422 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   5.9e-12   5.5e-09       2      43 ..       4      45 ..       3     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.9e-12
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43
                  v+VvGGg+aG+ AA +  ++Ga+vlL+++++++GG++t++  
    CDO69263.1  4 VIVVGGGLAGLSAAHTLLERGANVLLLDKQPFMGGNSTKATS 45
                  9*************************************9875 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1     2e-09   1.9e-06       2     138 ..       2     169 ..       1     186 [. 0.60

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2e-09
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.S-.-EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................ CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.ra.dglnqrtmellrqlGledrilaegapnelmgealyne................ 79 
                    ++V++VG+G+aGl++a+ L e+G +v+l++k+     ++ +a +g+n    ++ ++lG+ d+ +      + ++  l  +                
     CDO69263.1   2 AQVIVVGGGLAGLSAAHTLLERGANVLLLDKQPFMGGNStKAtSGINGAGTQTQQELGIPDSSKLFFEDTKRSARELARDdlirvltgrsgdavnw 97 
                    58*****************************98776666654256777777777777776655443322222222222223466666666666666 PP

                    ..............CCCCCEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCC CS
  FAD_binding_3  80 ..............lsdtpkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegv 138
                                  l++ +++r++    + p +v +y q e + +L+e+     +++++k++v  l +d++g 
     CDO69263.1  98 lqdkfqldlskvarLGGHSQPRTHRGNAQFPGMVITYAQMERLEDLAES-IPDRVKIKKKARVIQLIKDDSGA 169
                    5555555544433333335555555544666666666666666666666.33346666666666666666665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.5   8.6e-08   8.1e-05       1      29 [.       3      33 ..       3      59 .. 0.81
   2 ?    1.3   0.0      0.15   1.4e+02     114     152 ..     156     196 ..     128     209 .. 0.75
   3 ?   -0.1   0.0       0.4   3.8e+02     353     367 ..     415     429 ..     403     433 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.6e-08
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..t 29
                +viV+GgG+AG+ AA ++ ++Ga+vlL+  +
  CDO69263.1  3 QVIVVGGGLAGLSAAHTLLERGANVLLLdkQ 33
                69*************************9440 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
                 EES-EEEEEECTTEEEEEEETTS-EEEEC..EEEE--TT-B CS
        GIDA 114 ieeeveeliveekkvkgvvtedgetikak..avviatGtfl 152
                   + ++ ++++++ v gv  +++ + ++    v++atG + 
  CDO69263.1 156 KARVIQLIKDDSGAVIGVEYSHNGKTESAygPVILATGGYA 196
                 4444555666669999999888777777778*******986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.4
                 SSSBTEEE-CGGGTB CS
        GIDA 353 kkvkgLflAGqinGt 367
                 k ++gLf+AG++ G 
  CDO69263.1 415 KPIPGLFAAGEVAGG 429
                 6799********995 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   8.8e-08   8.3e-05       2      36 ..       3      37 ..       2      46 .. 0.93
   2 ?    1.9   0.0     0.078        74     123     166 ..     150     196 ..     140     201 .. 0.73
   3 ?    0.9   0.1      0.16   1.5e+02     372     385 ..     414     427 ..     395     454 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 8.8e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +viv+GgG AGl aA ++ +rg++Vlll+k++ +g
   CDO69263.1  3 QVIVVGGGLAGLSAAHTLLERGANVLLLDKQPFMG 37
                 79****************************97665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.078
                  T-EEE-S--EEEEECETTE..EEEEE...TTEEEEESEEEE----SS CS
  HI0933_like 123 gvklrletevksvekeedg.kfrvkt..kseeeleadklvlAtGGlS 166
                  +vk++ + +v ++ k+++g ++ v++  ++++e +   ++lAtGG +
   CDO69263.1 150 RVKIKKKARVIQLIKDDSGaVIGVEYshNGKTESAYGPVILATGGYA 196
                  79999999999998877761456777323444555567*******76 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
                  BTTSTTEEE-GGGB CS
  HI0933_like 372 skkvpgLffaGEvl 385
                   k +pgLf aGEv 
   CDO69263.1 414 GKPIPGLFAAGEVA 427
                  3789********96 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.9e-06    0.0027       1      31 [.      11      41 ..      11     227 .. 0.89
   2 ?    2.0   0.0       0.1        98     400     440 ..     393     433 ..     349     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.9e-06
                   HHHHHHHHHHHHTTEEEEEEESSSSSBTTS- CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvGGRir 31
                   laGL+aA++Ll++G +V++l  ++  GG   
     CDO69263.1 11 LAGLSAAHTLLERGANVLLLDKQPFMGGNST 41
                   79**************************865 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.1
                    E.BTTHHHHHHHHHHCH.....HCSTTEEE.SGGGCTTTTTSHHHH CS
  Amino_oxidase 400 yvsvgpghedydplakp.....egdprlffAGehtsreypgtvegA 440
                    + +++ g++++dp  +      +++p+lf AGe       g+v+gA
     CDO69263.1 393 VLHYTMGGLEIDPESRVldksgKPIPGLFAAGEV-----AGGVHGA 433
                    456777888888888888888899*********8.....4778888 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.6   2.6e-05     0.024      19      57 ..       3      40 ..       1      51 [. 0.91
   2 !    6.1   0.0    0.0062       5.8     201     232 ..     406     437 ..     397     439 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                 v++vG+G +GL+aa++l ++ + +v++l+++  +GG +
  CDO69263.1  3 QVIVVGGGLAGLSAAHTLLER-GANVLLLDKQPFMGGNS 40
                79*******************.********999999865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0062
                 HHHHHHHECEEETTEEE-THHHHHHHT-EB-- CS
        Thi4 201 edaivkktrevvpnlyvaGmevaevdganRmG 232
                 e+ ++ k+ + +p+l++aG  +  v+ganR+G
  CDO69263.1 406 ESRVLDKSGKPIPGLFAAGEVAGGVHGANRLG 437
                 889999*************************9 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.5   2.7e-07   0.00025      29      61 ..       2      34 ..       1      55 [. 0.94

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.7e-07
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 a+v+v+GgG aGl+A++t  + ga+V +lD++p
   CDO69263.1  2 AQVIVVGGGLAGLSAAHTLLERGANVLLLDKQP 34
                 89****************************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00013      0.13       1      30 [.       5      33 ..       2      72 .. 0.78
   2 !    6.0   0.0    0.0064         6     210     272 ..     132     200 ..     116     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i++G+G aGl+aa++l + g  ++l l+k+
   CDO69263.1  5 IVVGGGLAGLSAAHTLLERGA-NVLLLDKQ 33
                 677777777777777777777.67777776 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0064
  Pyr_redox_3 210 lkpdienrleelvke..ekikvlfnaevkeikekeeeykvk...tedgkkvevkddvvlat.Gykpdls 272
                  +     +rle+l ++  +++k+ ++a+v ++ ++++   +    +++gk+ +++  v+lat Gy  d++
   CDO69263.1 132 ITYAQMERLEDLAESipDRVKIKKKARVIQLIKDDSGAVIGveySHNGKTESAYGPVILATgGYAADFT 200
                  5666779999999989989******99988777777666553345667777779999999857887774 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.4e-05     0.013       2      35 ..       4      35 ..       3      46 .. 0.86
   2 ?   -0.2   0.0      0.41   3.9e+02     195     223 ..      62      89 ..      61     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasps 35
                   v+v+G+G+Agls A+ l   + g +v+l++  p 
     CDO69263.1  4 VIVVGGGLAGLSAAHTL--LERGANVLLLDKQPF 35
                   8****************..9999******77664 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.41
  Lycopene_cycl 195 dsdrllvEeTelaskpeLpadalkkrlaa 223
                    ds++l++E+T+ ++++ L +d+l + l+ 
     CDO69263.1  62 DSSKLFFEDTKRSARE-LARDDLIRVLTG 89 
                    6789*********999.999988776665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00092      0.87       2      39 ..       6      38 ..       5      56 .. 0.86
   2 ?    6.1   0.0      0.01       9.8      60     154 ..      85     193 ..      61     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00092
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgag 39
                   +vG+G +Gl+++  Ll+r       ++ l d+++++ g
     CDO69263.1  6 VVGGGLAGLSAAHTLLER-----GANVLLLDKQPFMGG 38
                   8*****************.....599999999999524 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.01
  NAD_binding_9  60 slftddpptfaeWlrerga............leeaeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgq..avll.ad 140
                     ++t ++ + ++Wl+++ +             +  ++ ++++  p  ++   + +++e+l+++ p++v+++  +a+v++l ++++g+   v   ++
     CDO69263.1  85 RVLTGRSGDAVNWLQDKFQldlskvarlgghSQ-PRTHRGNAQFPGMVITYAQMERLEDLAESIPDRVKIKK-KARVIQLIKDDSGAviGVEYsHN 178
                    566666677777777776666655554443212.3455556666666666556789**********988885.88999999999996333444444 PP

  NAD_binding_9 141 g.aslaadaVvLAlG 154
                    g ++ a+  V+LA+G
     CDO69263.1 179 GkTESAYGPVILATG 193
                    51456999******9 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.1e-05     0.039       2      34 ..       4      36 ..       3      46 .. 0.88
   2 ?   -1.0   0.0       2.9   2.8e+03      54      78 ..     150     175 ..     136     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34
                v+vvGgG+ gl +A +l e g++V +++ ++ +
  CDO69263.1  4 VIVVGGGLAGLSAAHTLLERGANVLLLDKQPFM 36
                89**********************999887755 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.9
                 TEEEECSEEEEEEEEETTS.EEEEEE CS
   Pyr_redox  54 gievllntkveeiegsedg.vesvkl 78 
                  +++  +++v ++ ++++g v +v+ 
  CDO69263.1 150 RVKIKKKARVIQLIKDDSGaVIGVEY 175
                 68999999999999999998888875 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     6e-05     0.057       9      40 ..       3      34 ..       1     112 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-05
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev 40
                   +v+vvGgG  +++ +++lle ga+v +++++ 
     CDO69263.1  3 QVIVVGGGLAGLSAAHTLLERGANVLLLDKQP 34
                   799************************99984 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00053       0.5       1      32 [.       3      34 ..       3      61 .. 0.84
   2 ?   -1.6   0.0       2.3   2.2e+03      27      95 ..      87     156 ..      73     164 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00053
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdise 32
                +v v+G G+ G + a+ ++++g +V l+d ++
  CDO69263.1  3 QVIVVGGGLAGLSAAHTLLERGANVLLLDKQP 34
                589**************************965 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.3
                 EE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEE.EES-HHHHHC-SEEEE-S-SSHHHHHH CS
     3HCDH_N  27 lvdiseealekalekieksleklvekgklkeeeveaalaris.fttdleeavdadlviEavvEnlelKrk 95 
                 l+ +s +a++  ++k +  l+k+++ g  ++  +++  a+   +   ++++ + +   E++++++++K+k
  CDO69263.1  87 LTGRSGDAVNWLQDKFQLDLSKVARLGGHSQPRTHRGNAQFPgMVITYAQMERLEDLAESIPDRVKIKKK 156
                 5556666666666666666666666666665555555554443455566666777788999999999986 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00037      0.35       3      49 ..       3      45 ..       1      68 [. 0.85
   2 ?   -4.0   0.0       4.8   4.5e+03      47      77 ..     117     148 ..     104     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00037
                EEEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS------------ CS
        MCRA  3 kaylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldgagd 49
                ++ +vG+G+a+L+aA  L +     g n+ +l++++ +gg  ++a +
  CDO69263.1  3 QVIVVGGGLAGLSAAHTLLER----GANVLLLDKQPFMGGNSTKATS 45
                6789**************995....78***********999887755 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.8
                 --------CCC----B.-TT-HHHHHHHTTSB CS
        MCRA  47 agdpekGyvlrggrel.eehyeclwdLlssip 77 
                 + ++++G  ++ g  + + ++e l+dL +sip
  CDO69263.1 117 QPRTHRGNAQFPGMVItYAQMERLEDLAESIP 148
                 45667777888888877999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 3947.47
//
Query:       CDO69264.1  [L=558]
Description: hypothetical protein BN946_scf185042.g166 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-37  128.5   0.1    2.6e-36  125.0   0.0    2.4  3  Pro-kuma_activ  Pro-kumamolisin, activation domain
    0.00012   21.4   1.6    0.00023   20.6   1.6    1.4  1  Peptidase_S8    Subtilase family
  ------ inclusion threshold ------
      0.089   13.1   0.0       0.35   11.2   0.0    2.0  2  Ish1            Putative stress-responsive nuclear envelope p


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   4.3e-40   2.6e-36       3     142 .]      38     176 ..      36     176 .. 0.97
   2 ?   -3.9   0.0       2.5   1.5e+04     118     130 ..     208     220 ..     200     228 .. 0.79
   3 ?    0.6   0.0      0.11   6.4e+02      41      80 ..     404     443 ..     399     472 .. 0.81

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 4.3e-40
  Pro-kuma_activ   3 wtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqv 97 
                     ++  ++  ++t+l++ri+Lkq++   l d+l dvs+p+s+ny+k+l+++ev+++ +p++e+++aV+ wL s+gi+a+   +t++w++++++va++
      CDO69264.1  38 FQASNAPHPDTVLNLRIALKQKDPIGLIDKLYDVSTPGSSNYRKFLSKAEVEQYTSPKDESLAAVTTWLDSHGIKAKP-GATNQWLNIEVPVATA 131
                     566778899*********************************************************************.**************** PP

  Pro-kuma_activ  98 erllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     + +l+++f+ ++h+k++ s +r+ +ys+P+++k + d+i pt++f
      CDO69264.1 132 NAMLDAEFSVFEHQKTGISAIRTLSYSVPASVKPHLDFIYPTTSF 176
                     *******************************************98 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.5
  Pro-kuma_activ 118 arcdeyslPealk 130
                     a c+ +++P++l+
      CDO69264.1 208 ASCNDAITPACLQ 220
                     6799999999998 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.11
  Pro-kuma_activ  41 spnygkhltaeevaelfapseeaidaVrnwLessgiaasr 80 
                     sp+    l++  + + f + + ++da+ ++L   g ++  
      CDO69264.1 404 SPETAAQLSSGGFSNIFPAPQYQSDAISSYLSTLGSTNAG 443
                     666667799999999****************988876655 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.6   3.8e-08   0.00023     180     265 ..     387     494 ..     374     521 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.8e-08
                   CTTTSTTCEEEEEES........................TTSSB-TT--B-TT..............-EEEE-S-CCCCCCCCCHHHTTTHHEEEE- CS
                   xxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 180 tpstsknvitvgayt........................tegkiapfSsrGpssd.......gklkpdivapGgnivstwsrqsnnsaglssyqsms 245
                   +ps++  v+ vga++                        + + i+++ s+  s++       g++ pd++a G n   +++ ++  +     ++ +s
    CDO69264.1 387 FPSGCPFVTVVGATQgtspetaaqlssggfsnifpapqyQSDAISSYLSTLGSTNaglfntsGRAYPDVSASGIN--YQVTING--T-----VTPVS 474
                   588888889999999999999999999999999999999555555555554444448888889999*********..4444444..3.....789** PP

                   SHHHCHHHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 246 GTSmAsPnaagaaAlllsal 265
                   GTS+++P+ a+++All +++
    CDO69264.1 475 GTSASTPVFASVVALLNDRF 494
                   ***************98754 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.9e-05      0.35      11      26 ..     104     118 ..     103     120 .. 0.84
   2 ?   -3.4   0.0       2.1   1.3e+04      16      26 ..     223     233 ..     223     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
        Ish1  11 kWLdshGipvskaast 26 
                  WLdshGi++ k+++t
  CDO69264.1 104 TWLDSHGIKA-KPGAT 118
                 6********5.88876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.1
        Ish1  16 hGipvskaast 26 
                 ++ip+++a+ +
  CDO69264.1 223 YNIPTTPATES 233
                 89**8899875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4346.76
//
Query:       CDO69265.1  [L=227]
Description: hypothetical protein BN946_scf185042.g167 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-06   26.1  10.0    3.9e-06   26.0  10.0    1.0  1  Mitofilin       Mitochondrial inner membrane protein
     0.0028   17.6   5.2     0.0028   17.6   5.2    1.9  2  AIF-MLS         Mitochondria Localisation Sequence
     0.0066   16.3  10.7     0.0066   16.3  10.7    2.8  2  Remorin_C       Remorin, C-terminal region
  ------ inclusion threshold ------
      0.014   15.3  14.5      0.014   15.3  14.5    1.5  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.035   13.4   8.2      0.049   12.9   7.7    1.5  1  HemX            HemX, putative uroporphyrinogen-III C-methylt
       0.43   11.1   6.8       0.51   10.8   4.2    2.2  2  KELK            KELK-motif containing domain of MRCK Ser/Thr 
        5.6    7.6  22.3        4.7    7.9  16.0    2.9  3  DUF883          Bacterial protein of unknown function (DUF883
        6.1    6.9  14.5       0.29   11.1   6.6    2.4  3  Phasin          Poly(hydroxyalcanoate) granule associated pro


Domain annotation for each model (and alignments):
>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0  10.0   1.7e-09   3.9e-06      93     213 ..      84     223 ..      12     227 .] 0.79

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.7e-09
   Mitofilin  93 kqssassevaeeeaeatkkaaeakaqqpkseqekekaleevlkealskaekataaakeakdeakkavkeavdklkeasdteeksrekardtaleaaeaa 191
                    +   +++  +++a + +++ ka+++ ++ e e++ ee+++ a  k ++a a+a+++++ ++    ++ d++k+++ +++++ e + + a+++++a+
  CDO69265.1  84 PHAQRVADQERLKQKAAELRDAGKATAHAAVREGEQKYEETKASAQDKLASARAQATQSTQGVRDTAVRQYDNAKATVTDAAHKVEHKYEDAVHKTKAE 182
                 22344455566667777777777779************************************************************************* PP

   Mitofilin 192 aek...................eleklkevielakqseeea 213
                 a++                   ++e +++v+e a++ e+ea
  CDO69265.1 183 AQSwnqwfwswfgygkekadetKREGAQKVVEGAQKVEKEA 223
                 **************999999999999999999999998886 PP

>> AIF-MLS  Mitochondria Localisation Sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   5.2   1.3e-06    0.0028      39     172 ..      51     183 ..      47     188 .. 0.59
   2 ?   -1.2   0.7      0.78   1.7e+03      84     109 ..     198     223 ..     196     226 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
     AIF-MLS  39 pGss.GsnmiYYLvvGvtvsaG.GYYtYktvtseqakhtehitnlke.ktk.aelqplqgekenvaeaekasseapevsvveaevvdaeevpdataava 133
                 p +s Gsn +  LvvG t + G GYY  ++  s+   h++++ + +  k+k ael+   + k  ++ a +++++  e++ + a+   a   ++at+ ++
  CDO69265.1  51 PKPSgGSNTL-LLVVGGTAAIGaGYYFMRQ--SQPDPHAQRVADQERlKQKaAELRD--AGKATAHAAVREGEQKYEETKASAQDKLASARAQATQSTQ 144
                 5555166765.6999999888768998885..6666677777765431222134433..3344555566666666777777777777777777777665 PP

     AIF-MLS 134 eeasacpddaeaapvettavsaetepevtdaatgetaev 172
                     ++  + + a+  +t +  ++e +  da     ae+
  CDO69265.1 145 GVRDTAVRQYDNAKATVTDAAHKVEHKYEDAVHKTKAEA 183
                 555555555555555666666666666666666555554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.78
     AIF-MLS  84 ktkaelqplqgekenvaeaekassea 109
                 k ka++++ +g ++ v++a+k  +ea
  CDO69265.1 198 KEKADETKREGAQKVVEGAQKVEKEA 223
                 56777778888888888888877776 PP

>> Remorin_C  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  10.7     3e-06    0.0066      36     100 ..     106     170 ..      92     175 .. 0.91
   2 ?   -1.9   4.6       1.4   3.1e+03      49      73 ..     199     223 ..     167     226 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3e-06
   Remorin_C  36 kkakaeaelrkleeklEkkrakaleklknklariekkAeekRasaeakrreeelktkekankirs 100
                  ka+a a++r+ e+k E+ +a+a++kl +  a++ +  +++R +a  + ++  + +++ a+k+ +
  CDO69265.1 106 GKATAHAAVREGEQKYEETKASAQDKLASARAQATQSTQGVRDTAVRQYDNAKATVTDAAHKVEH 170
                 699******************************************************99999865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
   Remorin_C  49 eklEkkrakaleklknklariekkA 73 
                 ek+++ + + ++k+ +  +++ek+A
  CDO69265.1 199 EKADETKREGAQKVVEGAQKVEKEA 223
                 3666666666666666666666666 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  14.5   6.1e-06     0.014      94     186 ..      92     184 ..      83     188 .. 0.93
   2 ?   -3.0   0.2       2.5   5.5e+03     149     162 ..     205     218 ..     197     225 .. 0.34

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
                     HHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXXXXX CS
  Apolipoprotein  94 qeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelkaqle 186
                     qe+l+++a+elr+  ++ + a     +   ee++++ + +l   + +++++++ v++++ +++++++++++++a +++++ e ++++ ka+ +
      CDO69265.1  92 QERLKQKAAELRDAGKATAHAAVREGEQKYEETKASAQDKLASARAQATQSTQGVRDTAVRQYDNAKATVTDAAHKVEHKYEDAVHKTKAEAQ 184
                     8999999999999999999999999999999999****************************************************9999865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.5
                     ---SSSHHHHHHHT CS
  Apolipoprotein 149 eerlssrveelrek 162
                     + + +++v e  +k
      CDO69265.1 205 KREGAQKVVEGAQK 218
                     22222222222222 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   7.7   2.2e-05     0.049       6      91 ..      56     148 ..      52     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
        HemX   6 glallallva..lavgaglyylgqqqvqeltaev...aelqqqlaaleqqlaq..veaekeqkqeleerlqqlaeklealekeleqlqkqlee 91 
                 g ++l l+v+   a+gag y+++q q + + ++v   ++l+q+ a+l ++ ++   +a +e +q+ ee+ + +++kl++++++ +q ++ +  
  CDO69265.1  56 GSNTLLLVVGgtAAIGAGYYFMRQSQPDPHAQRVadqERLKQKAAELRDAGKAtaHAAVREGEQKYEETKASAQDKLASARAQATQSTQGVRD 148
                 4566666664326799999999999975554444677999*******9999883323344556777777777788888888888877776654 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.2   0.00023      0.51      12      66 ..      77     129 ..      73     149 .. 0.72
   2 ?    0.9   1.3      0.29   6.4e+02      24      61 ..     126     164 ..     111     182 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
        KELK  12 lkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklselrsqkq 66 
                 ++q + + + + +  qErlk+++ eL+da +   +a +  +e ++k++e+++  q
  CDO69265.1  77 MRQSQPDPHAQRVADQERLKQKAAELRDAGKA--TAHAAVREGEQKYEETKASAQ 129
                 667777888899999*************9765..455555666666666654433 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.29
        KELK  24 aeaqErlksqkke.Lkdaisqrklamqefsevneklsel 61 
                 a aq++l s   +  + ++  r++a+ ++ +++  +++ 
  CDO69265.1 126 ASAQDKLASARAQaTQSTQGVRDTAVRQYDNAKATVTDA 164
                 333444433333212334445556666666555555554 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.4     0.042        94      34      69 ..      93     128 ..      78     131 .. 0.55
   2 ?    7.9  16.0    0.0021       4.7       8      65 ..     111     168 ..      93     186 .. 0.61
   3 ?   -1.0   0.3       1.3   2.8e+03      45      63 ..     203     221 ..     197     226 .. 0.43

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.042
      DUF883  34 erleerlerarerlrdaeeavaerakeaaeaaddyV 69 
                 erl+++++++r++ +++++a++++ ++  e+++  +
  CDO69265.1  93 ERLKQKAAELRDAGKATAHAAVREGEQKYEETKASA 128
                 455555555555555555555555555555544443 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
      DUF883   8 eslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaa 65 
                 ++++ + e+  +e++++a+++++++R++++++ + +r+++ ++++++++ + +aa+++
  CDO69265.1 111 HAAVREGEQKYEETKASAQDKLASARAQATQSTQGVRDTAVRQYDNAKATVTDAAHKV 168
                 4555666666667777777777777777777777777777666666444444444333 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.3
      DUF883  45 erlrdaeeavaerakeaae 63 
                 e+ r+ +++v+e a+++ +
  CDO69265.1 203 ETKREGAQKVVEGAQKVEK 221
                 3333334444444444443 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.6   0.00013      0.29      33      89 ..     106     162 ..     100     179 .. 0.81
   2 ?    2.9   0.5     0.047     1e+02      51      78 ..     157     184 ..     152     190 .. 0.56
   3 ?   -2.2   0.3       1.7   3.9e+03      64      73 ..     210     219 ..     196     226 .. 0.36

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
      Phasin  33 GsklfeaLvkeGeklekktkkvaeekleevresvkskveevkekaeeqwdklekafd 89 
                 G+    a v+eGe+  ++tk++a++kl ++r +++++++ v++ a +q d+    + 
  CDO69265.1 106 GKATAHAAVREGEQKYEETKASAQDKLASARAQATQSTQGVRDTAVRQYDNAKATVT 162
                 555566789**********************99999999999999999997665554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.047
      Phasin  51 tkkvaeekleevresvkskveevkekae 78 
                 +k+++++++++v+++ + +v++ k++a+
  CDO69265.1 157 AKATVTDAAHKVEHKYEDAVHKTKAEAQ 184
                 4555566666666666666666665553 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
      Phasin  64 esvkskveev 73 
                 ++v + +++v
  CDO69265.1 210 QKVVEGAQKV 219
                 2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1841  (0.102683); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1570.31
//
Query:       CDO69266.1  [L=384]
Description: hypothetical protein BN946_scf185042.g168 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2462.74
//
Query:       CDO69267.1  [L=242]
Description: hypothetical protein BN946_scf185042.g169 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1736.75
//
Query:       CDO69268.1  [L=336]
Description: hypothetical protein BN946_scf185042.g170 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.034   14.3   0.0      0.075   13.2   0.0    1.6  1  MRP_L53   39S ribosomal protein L53/MRP-L53


Domain annotation for each model (and alignments):
>> MRP_L53  39S ribosomal protein L53/MRP-L53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-06     0.075      18      53 .]     164     197 ..     162     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-06
     MRP_L53  18 lskppaarnpgckiktkvlpdastseptvkVtFkDG 53 
                 l  pp+  n+  ++  +v+  as sep++ +tFk+G
  CDO69268.1 164 L--PPTIVNYAAAVVLEVRQPASSSEPVLRFTFKNG 197
                 5..788888889999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2270.23
//
Query:       CDO69269.1  [L=135]
Description: hypothetical protein BN946_scf185042.g171 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   16.8   0.5       0.68    9.2   0.0    2.0  2  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.3   0.00025       4.5       3      15 ..      10      22 ..       8      35 .. 0.83
   2 !    9.2   0.0   3.8e-05      0.68      67     133 ..      31     109 ..      22     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00025
                EEEEEEEE--SBB CS
  His_Phos_2  3 ksvvvviRHGdRt 15
                 +vvv+ RHGdR 
  CDO69269.1 10 LGVVVLARHGDRQ 22
                68**********6 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 3.8e-05
                 -SSSTTS.B-HHHHHHHHHHHHHHHHHCH........TCCHTTSS--..TTEEEEEE..SSHHHH.HHHHHHHHHHCHCC CS
  His_Phos_2  67 lilkwggelthaGrkqaeelGrqfrqrYp........lgLlrlhlty..kdlkiras..segRvi.aSAaafakGllgle 133
                 ++  +    t+ G++q ++lG  +r  Y         +g++++ + +  +++ +ra   +eg vi +SA a ++Gl ++ 
  CDO69269.1  31 YTASATA-ITPLGETQEFQLGSLLRSIYLnasaptyiQGIADSSSLFqqSQVIVRADagGEGGVIfDSAVALVQGLWPPT 109
                 6666677.9*******************9999999998888887777667788886522566665478888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1008.90
//
Query:       CDO69270.1  [L=198]
Description: hypothetical protein BN946_scf185042.g172 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1516.23
//
Query:       CDO69271.1  [L=215]
Description: hypothetical protein BN946_scf185042.g173 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-37  128.6   0.0    2.5e-37  128.3   0.0    1.0  1  adh_short        short chain dehydrogenase
    1.2e-28  100.3   0.0    1.8e-28   99.7   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.4e-06   28.3   0.0    2.9e-06   27.3   0.0    1.5  1  KR               KR domain
    0.00015   21.2   0.0    0.00021   20.8   0.0    1.1  1  DUF1776          Fungal family of unknown function (DUF1776)
    0.00026   20.9   0.1    0.00045   20.2   0.1    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0039   16.7   0.0      0.011   15.3   0.0    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.075   12.8   1.6       0.15   11.8   1.6    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   9.6e-41   2.5e-37       1     180 [.       5     193 ..       5     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 9.6e-41
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEE.....EE---S.S--S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl..gkldvL.....vnNAGi.tgsg 91 
                 kv++vtGassG+Gra a +la++G+++++++r+++ lee++  + +  +k+l +q+Dv+++e+v++l++  +  +    l  L      +NAGi + ++
  CDO69271.1   5 KVAIVTGASSGVGRASAIALAAAGWSLALFARRAQSLEETKRLCAD-PTKVLLVQGDVSNEEDVKRLFQSTITSFgiPDLSHLplppnPQNAGItSPQV 102
                 89***********************************999999887.79**************************666788889999999****88899 PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPG 180
                 p++++s e++++vi++Nl+g+fl+tr+++++++  +  +GrI+n +S+ +  p +  aaY+AsK+av glt+s   + + ++i+++ +  G
  CDO69271.1 103 PVEDVSLETFQQVININLVGPFLCTREAVKQFKaqQPPGGRIINNGSISAYTPRPFSAAYTASKHAVLGLTKSTLLDGRAHNITCTQIDIG 193
                 *********************************777789*********************************************9998766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   6.9e-32   1.8e-28       1     169 [.      11     190 ..      11     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 6.9e-32
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEE.......E-----EGCSS-GGG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilv.......nnagiapklkgpfle 89 
                   Ga sg+Gra A ala++G++++l  ++ ++ +++++l ++  + + ++ DV++ee+v++l++ +  +fg  D           nagi+ + + p+++
    CDO69271.1  11 GASSGVGRASAIALAAAGWSLALFARRAQSLEETKRLCADPTKVLlVQGDVSNEEDVKRLFQSTITSFGIPDLSHlplppnpQNAGITSP-QVPVED 106
                   899***************************9999999998555536**********************998876433444447*******.****** PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNav 169
                   +s e f++++++nl + fl++++a++ +k++    g+i+n  s++a    p  +ay+a+K+a+ +lt++   +  +++i++  +
    CDO69271.1 107 VSLETFQQVININLVGPFLCTREAVKQFKAQqppgGRIINNGSISAYTPRPFSAAYTASKHAVLGLTKSTLLDGRAHNITCTQI 190
                   **************************777666889***********************************99999999998766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.1e-09   2.9e-06       4      79 ..       8      78 ..       6     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.1e-09
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee 79
                ++tG+  g+G++ a  la+ g  +l+l++R+a    +s +++++l a  ++v +v+ Dvs++++v++l+++  +++
  CDO69271.1  8 IVTGASSGVGRASAIALAAAGW-SLALFARRA----QSLEETKRLCADPTKVLLVQGDVSNEEDVKRLFQSTITSF 78
                8******************996.69******4....56667889*************************9877665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.1e-08   0.00021     104     202 ..     100     197 ..      96     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.1e-08
     DUF1776 104 ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnldl 202
                 p  p+e ++l+++++++n +l+ p+l + + ++++++++      i+ n sis+    pf+a  +    a+  l+++   + r hni  tqi +G  +l
  CDO69271.1 100 PQVPVEDVSLETFQQVININLVGPFLCTREAVKQFKAQQ-PPGGRIINNGSISAYTPRPFSAAYTASKHAVLGLTKSTLLDGRAHNITCTQIDIGERSL 197
                 5679********************************966.555567789***************************99999999***********8666 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.7e-07   0.00045       1      59 [.      11      72 ..      11      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH....CTTTCEEEE--TT-CCHHHHHHT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele....aeeglevvegdvtdvedlaealk 59
                    GA+ +vGr+ +  l+a+ g+++ +++R++++l+e +    +  ++ +v+gdv+++ed+++ ++
      CDO69271.1 11 GASSGVGRASAIALAAA-GWSLALFARRAQSLEETKrlcaDPTKVLLVQGDVSNEEDVKRLFQ 72
                    9**********999999.5*************9876666577999**************9987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.1e-06     0.011       2      62 ..       8      73 ..       7      77 .. 0.83
   2 ?   -1.9   0.0      0.74   1.9e+03     137     155 ..     157     175 ..     135     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.1e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke 62
                +VtGa+  +G+a + al+++g+ +  ++r+  a+  ++ ++l        lv++d+ ++++++rlf++
  CDO69271.1  8 IVTGASSGVGRASAIALAAAGWSLALFARR--AQSLEETKRLcadptkvLLVQGDVSNEEDVKRLFQS 73
                8**********************8888888..333333333466899999****************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.74
                 --SSHHHHHHHHHHHHHHH CS
   Epimerase 137 kpnspYaaaKlageklvea 155
                 + + +Y a+K+a+  l+++
  CDO69271.1 157 PFSAAYTASKHAVLGLTKS 175
                 4467788888888777665 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.6     6e-05      0.15      40      63 ..       4      27 ..       1      33 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
                     -SEEEEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafg 63
                      k ++v GaS+G G As ia+a +
       CDO69271.1  4 LKVAIVTGASSGVGRASAIALAAA 27
                     58899***************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1586.11
//
Query:       CDO69272.1  [L=357]
Description: hypothetical protein BN946_scf185042.g174 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-14   53.2  10.4    4.5e-14   53.2  10.4    2.3  3  Iwr1      Transcription factor Iwr1
     0.0059   16.7   9.2     0.0091   16.0   9.2    1.3  1  TFIIA     Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.039   13.9   0.1    1.6  1  Flexi_CP  Viral coat protein


Domain annotation for each model (and alignments):
>> Iwr1  Transcription factor Iwr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         2   1.2e+04      35      39 ..      58      62 ..      22      75 .. 0.52
   2 !   53.2  10.4   7.5e-18   4.5e-14       1      74 []     243     314 ..     243     314 .. 0.76
   3 ?   -3.5   0.7         3   1.8e+04      35      50 ..     322     337 ..     319     345 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
        Iwr1 35 deell 39
                +++ +
  CDO69272.1 58 EQAAW 62
                22222 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 7.5e-18
        Iwr1   1 ddYVyDvYvreeeeeeseeeetekdigvlvieeedeelldafaeddedsdeeededdeDsNaEdnyrnDYPdeE 74 
                 +dYVyDv++++ + +  e +e+ +   + +++  + el + ++++de ++ee+deddeDsNaEd+y+nDYPdeE
  CDO69272.1 243 EDYVYDVFYQRPT-TFAELYEPGAGSNIAKLTGLPPELSG-LYGEDESDEEESDEDDEDSNAEDWYTNDYPDEE 314
                 69******99655.55566666666667777777777774.455555556699********************9 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
        Iwr1  35 deelldafaeddedsd 50 
                 +eel d+f e+++ ++
  CDO69272.1 322 EEELSDEFHEHSDYEE 337
                 4555556655444333 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   9.2   1.5e-06    0.0091      87     374 ..      11     339 ..       2     340 .. 0.36

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-06
       TFIIA  87 sqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasg..qlykvnvqasgaqqiaaqplqqvvqq..............sqgs 169
                 +q++p  +   +++ ++ +      ++at   ++k   +v   ag+  q a +  q      q+++ ++++a+ + ++ q               + ++
  CDO69272.1  11 QQQQPYTILRIKRKRNEEPLDALVVESATRRKKSKAGLNVFQYAGTVEQAAWNddQ------QKKELEERLASLARESAQRkaaeaapirapdtaAAAA 103
                 33333333333333333333233334445555555555555556666666655321......3333333333333333221111111111111111111 PP

       TFIIA 170 aaqssvaalqaq.sqqaqalaepqqqlekqqqq.qqqqqqqqqqq.qvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaee 265
                 aa+ ++a++ ++ + + +   ep         + ++ q  +  ++ ++   +q + +q +++ ++++a+++v+ss++ ++  +   + +++e+++s+ +
  CDO69272.1 104 AAAPATAPPPSAtTDSVSIRKEPPAP----VPPaMRTQYGPPTKTyTIVPPEQVPLEQYARK-HNATAPPKVYSSKEMEEM-KRGAAFKMYEAVPSSAS 196
                 11111222111112221222222221....11112222222222223332222211111111.113333444444444333.22223344555555555 PP

       TFIIA 266 eagaqkeelsreeidrireealkakelekeskkkkraeessla......dlseilqlDGagddsde................................. 325
                  a+++     ++ei+++    l +  l+ ++ +         +      ++++ +  DG ++d                                    
  CDO69272.1 197 LAANE----AEKEIEKF--LPLLKDYLNVNEVA---------PpspspaAQTSSANGDGMDEDYVYdvfyqrpttfaelyepgagsniakltglppels 280
                 44443....33445544..11111222222222.........021222233444444444444444555555555555555555555555555555555 PP

       TFIIA 326 ......eeeeeesdedsdsessddedeq.......veEDplNSdDDvddeddddlfdtdnvi 374
                       e+ eeesded+++++ +d           +e Dp  S+   +de   ++ d ++vi
  CDO69272.1 281 glygedESDEEESDEDDEDSNAED--WYtndypdeEEPDPASSEEELSDEFH-EHSDYEEVI 339
                 566632222233333333333333..22334567788899999999999665.448988887 PP

>> Flexi_CP  Viral coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.5e-06     0.039      89     128 ..     162     201 ..     156     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.5e-06
    Flexi_CP  89 lkknkPPanWakkgfkeetkfAaFDfFnaVeseaalepae 128
                  ++ +PP+ ++ k+++e ++ AaF +++aV s+a+l+ +e
  CDO69272.1 162 HNATAPPKVYSSKEMEEMKRGAAFKMYEAVPSSASLAANE 201
                 56779******************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2410.63
//
Query:       CDO69273.1  [L=595]
Description: hypothetical protein BN946_scf185042.g175 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   13.5   0.0      0.055   12.9   0.0    1.1  1  DUF5009   Domain of unknown function (DUF5009)


Domain annotation for each model (and alignments):
>> DUF5009  Domain of unknown function (DUF5009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-06     0.055     198     245 ..      65     112 ..      54     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-06
     DUF5009 198 tqkkrllriallpllmaillskkeedswnevllnwspaawlykfyylk 245
                  +++ +l + +l  ++ai+++++ ++s+ e + + sp+++++  + l+
  CDO69273.1  65 QTENAWLPVEVLKAVVAIIVATRRQTSLIESIRDHSPVPFMFDAKTLD 112
                 56899************************************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4031.66
//
Query:       CDO69274.1  [L=548]
Description: hypothetical protein BN946_scf185042.g176 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-14   52.1   1.1    2.3e-13   49.8   1.0    2.4  2  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.053   13.4   4.4       0.68    9.9   2.1    3.6  2  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   1.0   2.5e-17   2.3e-13       3      46 ..      32      90 ..      30      92 .. 0.76
   2 ?   -3.8   0.0       1.4   1.2e+04      26      37 ..     323     334 ..     320     335 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 2.5e-17
  F-box-like  3 rLPdEiLlqIF...............syLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                 LP+EiL +IF               s   ++dL++l++VCrrWr++ald   LW++++
  CDO69274.1 32 KLPPEILTHIFsmvprdlpthgttrfSATQTYDLIPLTHVCRRWRDIALDASPLWSTVC 90
                6**********4444444444444332223446*************************9 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.4
  F-box-like  26 lVCrrWrrvald 37 
                 l + +W ++a d
  CDO69274.1 323 LASEDWSDLAMD 334
                 567899999865 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   7.6e-05      0.68       6      39 ..      33      81 ..      32      87 .. 0.89
   2 ?   -3.3   0.0         1   9.2e+03      15      23 ..     198     206 ..     198     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.6e-05
                S-HHHHHHHHHTS-HHH...............HHHHCTT-HHHHHHHTT CS
       F-box  6 LPsevlrhILerLplsd...............llalrrVSkgwrilids 39
                LP+e+l hI++ +p                  l+ l  V+++wr++  +
  CDO69274.1 33 LPPEILTHIFSMVPRDLpthgttrfsatqtydLIPLTHVCRRWRDIALD 81
                9***********88887999999999999999************98765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1
                 HHTS-HHHH CS
       F-box  15 LerLplsdl 23 
                 L++L++ d+
  CDO69274.1 198 LKHLEFHDV 206
                 89****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 4489.91
//
Query:       CDO69275.1  [L=659]
Description: hypothetical protein BN946_scf185042.g177 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4508.50
//
Query:       CDO69276.1  [L=511]
Description: hypothetical protein BN946_scf185042.g178 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3452.66
//
Query:       CDO69277.1  [L=105]
Description: hypothetical protein BN946_scf185042.g179 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 731.98
//
Query:       CDO69278.1  [L=734]
Description: hypothetical protein BN946_scf185042.g180 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  106.6  15.5    8.7e-19   67.6   2.6    2.7  2  MFS_1     Major Facilitator Superfamily
    9.4e-05   21.4  30.0    0.00012   21.1   6.2    3.7  4  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        1.9    6.2  12.7          3    5.5  12.7    1.3  1  Retinal   Retinal protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   4.5   1.2e-15   7.1e-12       9      99 ..     277     366 ..     261     369 .. 0.83
   2 !   67.6   2.6   1.5e-22   8.7e-19     132     352 ..     369     679 ..     368     680 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.2e-15
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                  +++++ ++a++  + e+l++s  +i+l l+l+++ ++ + l ++++s+ +Gr++v+l++ +l  +g+++++++ ++ +l+ +r++q+lga
  CDO69278.1 277 RFTFFANAAAIS-QIEEELHASSGQISLSLSLFTAIQGTMPLMWSVFSEFWGRKKVYLVSTALCMVGCIVAALSKTIGVLIGMRCIQALGA 366
                 334444555555.89****************************************************77777756666***********97 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 1.5e-22
       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvlfllll................peepperkrkspkeee.......................... 188
                 lG+ lgp+lgg+l+  + Wra+f++l i+  ++++lf+ +                 +              +                          
  CDO69278.1 369 LGPSLGPVLGGVLTKGFDWRATFWFLVIFVGICLMLFVPFKdtfrrerslvyqaalkR--------------Rlaqqsakgsetstlsqvtatspvvqs 453
                 8********************************8865555566544444444444440..............256666666666666666666666666 PP

       MFS_1 189 .................................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevl 238
                                                                  +     p+ p+   l++ + l il+++ l+f+f +s+++t + + l + +
  CDO69278.1 454 pepnektralvsaaddkhavdeqtgdkdlekaqqlaggdvvaplnevtlSLADVNPVNPIVHVLRRMNNLTILFASGLIFAFSYSIAYTCSRT-LADKY 551
                 66666777788888889****999999999999888776666655555544444444446777777777779999999999999999999999.5**** PP

       MFS_1 239 glsglllaglllallalvgailallagrlsdr.lgrrrrlllallll......llaalglallavt........ssavllll.vlvliGf.glgfvfps 320
                 +++ ++++gl+l +++++++ +++l+gr+sd  + + r+++ +++++      +l+ + +++ +v+        + +v +++ +l+l+Gf    +++++
  CDO69278.1 552 DYN-AMQIGLVLLAFGIGSLLGSVLGGRYSDFvFRKLRARNGGVSSAemrlesTLVPMVFFPPSVIaygwvcerHVNVGAICvMLFLAGFfSICIYSST 649
                 ***.8*************************996444444444444432222213333333333333333345554444444468999***777777999 PP

       MFS_1 321 llalasdlappeeagtasglfntagslggalg 352
                 l+++++ ++   ++ +a++ ++ +++l ++++
  CDO69278.1 650 LAYIVDANV--GRSSSAVATNSAFRGLTAFVA 679
                 999999999..9999***********999987 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   6.2     2e-08   0.00012       9     116 ..     265     366 ..     257     369 .. 0.78
   2 ?   -0.7   0.1     0.083   4.9e+02      54      97 ..     366     407 ..     364     415 .. 0.73
   3 !    8.9   0.3    0.0001      0.62      16      76 ..     529     586 ..     514     588 .. 0.74
   4 !    4.3   5.7    0.0026        15     336     433 ..     615     710 ..     603     716 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-08
                 HHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGG CS
    Sugar_tr   9 gllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevliv 107
                 +++ g    +++ f+ + ++a   + +++     +ss +++l++s+f +++    l+ + +++++GRkk++l++++l+++g ++ a++k   ++ vli 
  CDO69278.1 265 SMITGLGANIYNRFTFFANAAAISQIEEEL---HASSGQISLSLSLFTAIQGTMPLMWSVFSEFWGRKKVYLVSTALCMVGCIVAALSK---TIGVLIG 357
                 555555555555555555544433333333...33788***************************************************...9****** PP

                 GHHHHHHHH CS
    Sugar_tr 108 gRvlvGigv 116
                 +R +  +g+
  CDO69278.1 358 MRCIQALGA 366
                 ****99985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.083
                 THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TT CS
    Sugar_tr  54 iflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaak 97 
                 + l+G  +G +++g l++ f+ + ++ + ++  ++g++l+ + +
  CDO69278.1 366 APLLGPSLGPVLGGVLTKGFDWRATFWFLVI--FVGICLMLFVP 407
                 5678888999999999999999988887554..55666666554 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0001
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHH CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRk 76 
                 +g+i af+++++  + +  + +++ ++  ++++gl++ +f +G+++Gs+++g  +d++ Rk
  CDO69278.1 529 SGLIFAFSYSIA--YTCSRTLADKYDY-NAMQIGLVLLAFGIGSLLGSVLGGRYSDFVFRK 586
                 455555555555..4444444555455.479**********************99987666 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.0026
                 ..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHH CS
    Sugar_tr 336 ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifv 433
                  +a+ +v +    +++ai  +++ + +f++++ +    ++ +    +  s+a a   a   l  f+ + +   ++eaig g+ + ++agl+vl+ + +
  CDO69278.1 615 VIAYGWVCE-RHVNVGAICVMLFLAGFFSICIYSSTLAYIVDANVGRS-SSAVATNSAFRGLTAFVAAEVAVPLQEAIGDGGLYSLWAGLMVLSDLLI 710
                 566666666.36788899999999999999988877666666544333.45556666677799*****************************986554 PP

>> Retinal  Retinal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.7    0.0005         3    1045    1166 ..      23     147 ..       3     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0005
     Retinal 1045 pslptvqssp.sppls..prapsPpasprvlspptskkrtsppaqhklpsppkesspaqeklsspptqrteasspsslpsssppvspsqgskesrds 1138
                  +  p+ qss+ s  +s  +++ +P++ p+  sp ++  + s  +   lpsp+k+s ++++ + ++ t +  as ++s+ ss  p++ s       +s
  CDO69278.1   23 SHCPNQQSSSsSTAIStaTGVGAPTMEPQPNSPLSNGGTDSNTQSGLLPSPAKSSDESPNVVVTTATVHISASGTASVFSSNVPTASSDAGTGGISS 119 
                  23333333330333331145679********999988888888888899***************************************999999999 PP

     Retinal 1139 edseaatakasgntcsifcpatsslfEa 1166
                    s a+t+  s    +i     s   +a
  CDO69278.1  120 GGSAASTQTTSDGSDKIAAASGSAAGDA 147 
                  9998888888888888877766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 4784.30
//
Query:       CDO69279.1  [L=1396]
Description: hypothetical protein BN946_scf185042.g181 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-24   86.7   0.0      2e-24   85.9   0.0    1.3  1  PHY           Phytochrome region
    5.9e-21   75.1   0.0    1.3e-20   74.0   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    3.6e-19   69.0   0.1    1.4e-18   67.0   0.1    2.0  1  Response_reg  Response regulator receiver domain
    1.1e-11   44.6   1.2    3.3e-11   43.0   1.2    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain
    1.2e-09   38.9   1.6    2.8e-08   34.5   0.1    3.8  3  GAF           GAF domain
    1.4e-07   32.2   0.1    7.7e-07   29.8   0.0    2.3  2  PAS_2         PAS fold
    2.1e-05   24.7   0.0    6.2e-05   23.2   0.0    1.7  1  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> PHY  Phytochrome region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0     8e-28     2e-24       4     171 ..     692     858 ..     689     870 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 8e-28
                 HHHHHHHHHHHSSSHHHHHTTTCCHHHHHTT-SEEEEEETTEEEEEESS--HHHHHHHHHHHHHTTTTSEEEESBCCCTSGGGG..CCCCCHSEEEEEE CS
         PHY   4 leeklvealareedleeglvdespnlldlvkadGaalllegklltlGetPseeairkllqwlereseeevfstdsLseayPeaa..aladvasGllais 100
                 l +kl++ + ++++    +v+++++ll+l +ad  +l++++    lG   + ++i  +++ l  ++ +++  +++++ +yP+++  +  +v++Gll ++
  CDO69279.1 692 LTRKLINTMPTDQHPGGYIVSNADDLLSLFDADYGVLVIGEGAKILGPNQNGQEILIVAEYLRLKQFTTLQVSQAVTVDYPDLQltNGLEVIAGLLYVP 790
                 56799************************************************************9999999999******776226679********* PP

                 ESSTTTEEEEEEE-CEEEEEEEESSSGGCCCCCCTCCCCSHHCHHHCCCCCETTEBS---HHHHHHHHHHH CS
         PHY 101 lsskeseyllWfRpevvqtvkWgGdpekaaeaddagsrlsPRkSFeawketvrgrslpWeeveleaarelr 171
                 ls   ++++ ++R+ + ++v+W+G+p  + ++++    l+PR+SF+ w+etv gr+++W++ ++e+a  l 
  CDO69279.1 791 LSTGGRDFIAFLRKGQPREVHWAGRPYRSDDRRN---LLEPRRSFKVWTETVAGRCRAWTDEHIETAGVLA 858
                 **************************99998886...9****************************97765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0     5e-24   1.3e-20       1     111 [.     991    1111 ..     991    1112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 5e-24
                  EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.......EE...TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHH CS
   HATPase_c    1 gdekrLrqiisnlvdNavkfatkageieveika.......se...ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklve 86  
                  gd++++r ++ nl  Na+k+ t+ gei+v ++a       ++     ++i v D+G Gip + l+++f  f q + + k  + g GlGl++v ++ve
  CDO69279.1  991 GDSRKIRTVVANLTANALKY-TSRGEISVICRAfdeptglRDggdLAVEIVVADTGVGIPSDRLENIFREFEQvETAPKAHSPGLGLGLAVVARIVE 1086
                  799*****************.99*********9866655511655688889**********************8777777889************** PP

                  HTTTEEEEEEETTTEEEEEEEEESS CS
   HATPase_c   87 lmgGeiwvesepgrGttftftlple 111 
                  ++gG+++v+s  g+G++f f lpl+
  CDO69279.1 1087 QVGGQLRVDSVLGQGSRFSFLLPLT 1111
                  ***********************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.1   5.7e-22   1.4e-18       1     111 [.    1237    1361 ..    1237    1362 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 5.7e-22
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSSSEHHHHHHHHHHCTTT..............SEEEEEESS CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpgmdGlellkeireedpe..............lpviiltah 80  
                    +liv+D+ ++r++l++ l  +g  +v  +++g+e le +++++ +d+il+Di+mp ++G+e++++ir+ +++              +p+ +++a 
    CDO69279.1 1237 ILIVEDNDINRMILAKRLSLDGH-TVVNTTNGQEGLEVVQTDRhFDCILMDIQMPLLNGYEATERIRAMEQDlelldrvshrfngrIPIFAVSAS 1330
                    8**********************.9999***********99988***********************9995566677778888888********* PP

                    TSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg   81 seeedavealkagaddflsKpfdpeeLlkal 111 
                      e ++ + ++ g+d+ + Kp+d ++L+++l
    CDO69279.1 1331 LFEHQRDDLYRQGMDGWILKPIDFKRLRNIL 1361
                    ***************************9876 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   1.2   1.3e-14   3.3e-11       5      67 .]     884     945 ..     882     945 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.3e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   5 flagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +l++ +HE rtPL+ i+ ++e+ ++ g+l+ e +e+l   +  ++ l+  ++dlLdl+r+e+g
  CDO69279.1 884 LLSNASHEVRTPLNHIINYLELAMN-GPLDTETRENLSHSHAASKSLLFTINDLLDLTRLESG 945
                 799*******************999.5**********************************97 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         7   1.8e+04      69      94 ..      57      79 ..      27      81 .. 0.64
   2 !   34.5   0.1   1.1e-11   2.8e-08       1     129 [.     558     682 ..     558     684 .. 0.74
   3 ?   -0.0   0.0      0.49   1.3e+03      84     126 ..     779     858 ..     714     863 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7
                TSTTHHTTHHHHHHHHTTESEEEEEE CS
         GAF 69 pdprfaqynrrdllenmgirsslvvP 94
                +  rf   ++++l ++ +++s+l++P
  CDO69279.1 57 EQARF---CHPSLTTPDHVHSALSLP 79
                22233...447777778888888877 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1.1e-11
                 SHHHHHHHHHHHHHHHHTESEEEEEE..EEETTEEECEEEEECCEEEET.TSHHHHHHHHHSSSEEESTGGTSTTHHTT..HHHHHHHHTTESEEEEEE CS
         GAF   1 dleelldtvveelrellgadrvalyl..pdydGlhydipqasrwlfmkn.grgicgqvlatgqplvipdstpdprfaqy..nrrdllenmgirsslvvP 94 
                 dle+ ++ ++  +++l++ +rv++y+  + ++G ++ + +  +w  + +             + l++p   +++  aq+   +   lenmg+r+s++v+
  CDO69279.1 558 DLETFVQVTAGLVKDLTQFHRVLVYQfdEGWNG-QV-VAELVDWNQTHDlF-----------RGLHFP---ASDIPAQAreLYALNLENMGVRASMSVS 640
                 8999********************995444455.44.56666662222223...........345566...33333333333355899*********** PP

                 EEETTEEEEEEEEEESSS.....CS.HHHHHHHH.HHHHHHH CS
         GAF  95 lvndgelwGllvlhnpsp.....pf.treelell.qvladqv 129
                 +v+ g lwGl+++h+  p     +f  r+ l+ll q++++ +
  CDO69279.1 641 IVAFGTLWGLVACHSYGPhgmrvSFpVRQMLRLLsQSISRNI 682
                 ***************878779888899999999999998876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.49
                 HTTES.EEEEEEEEETTE.....................................EEEEEEEEESSSCSHHHHHHHHHHHH CS
         GAF  84 nmgir.sslvvPlvndge.....................................lwGllvlhnpsppftreelellqvla 126
                 + +++  +l vPl  +g+                                     +w   v+ ++++ +t+e +e + vla
  CDO69279.1 779 GLEVIaGLLYVPLSTGGRdfiaflrkgqprevhwagrpyrsddrrnlleprrsfkVWTETVAGRCRA-WTDEHIETAGVLA 858
                 4444434455555555555555555555555555555555555566777777777777788888888.8888888877777 PP

>> PAS_2  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     3e-10   7.7e-07       4      45 ..     235     280 ..     233     321 .. 0.82
   2 ?   -2.7   0.0       3.7   9.5e+03      44      74 ..    1134    1164 ..    1125    1170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3e-10
                 --CCC-SEE-TTSEEEEEETT....TTEEEEEETTHHHHCSS-CCC CS
       PAS_2   4 ekIqrggliQPfGcllavdek....slrvlqvSeNaaemLglteek 45 
                 ++I+++g++Q +G+l+av e+    +l v qvSeN +e+Lgl++  
  CDO69279.1 235 QPIRIPGAVQGYGVLIAVAEDqnsgNLVVRQVSENSTELLGLSPSY 280
                 89****************9986777899**************9544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
                  CCCTTTCCCCCSECTTHHHHCCHS-CCCHCC CS
       PAS_2   44 ekllgtdlralltassaalLekalsareisl 74  
                  + + g ++++l++a s + +  a+++++ + 
  CDO69279.1 1134 QASRGSEIDDLVHAFSSTHMDGAVTSQDGQV 1164
                  5668999999999999999999998887665 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.4e-08   6.2e-05       9      71 ..    1250    1329 ..    1246    1343 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.4e-08
  OKR_DC_1_N    9 laealekegfevvgvtstdDllsvieqnsriaavvlsvd................deaaelldeirer.nedlPvFllae 71  
                  la++l+ +g +vv+ t+ +++l+v++++ + ++++++++                ++  elld +++r n ++P+F+++ 
  CDO69279.1 1250 LAKRLSLDGHTVVNTTNGQEGLEVVQTDRHFDCILMDIQmpllngyeateriramEQDLELLDRVSHRfNGRIPIFAVSA 1329
                  78899999***********************************************9999*****98875889*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 8687.12
//
Query:       CDO69280.1  [L=241]
Description: hypothetical protein BN946_scf185042.g182 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1838.62
//
Query:       CDO69281.1  [L=392]
Description: hypothetical protein BN946_scf185042.g183 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2691.07
//
Query:       CDO69282.1  [L=296]
Description: hypothetical protein BN946_scf184976.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00024   21.3   0.0     0.0015   18.8   0.0    2.0  2  BTB            BTB/POZ domain
  ------ inclusion threshold ------
       0.13   11.8   1.5       0.34   10.4   0.0    2.4  3  TF_Zn_Ribbon   TFIIB zinc-binding
       0.26   11.1   1.6        1.4    8.8   0.1    2.4  2  zinc_ribbon_2  zinc-ribbon domain
       0.56    9.7   3.0       0.48    9.9   0.3    2.3  2  zf-ribbon_3    zinc-ribbon domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.3e-07    0.0015      12     106 ..      29     127 ..      21     132 .. 0.82
   2 ?   -0.4   0.1      0.29   1.3e+03      65     101 ..     152     193 ..     152     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
                 -EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCE.....EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  12 DvtlvvgdgkefkahkavLaarSpyFkalftskeieessvs.....eielddvepeafealLefiYtgeleit.seenleelLaaadllqiprlkkace 104
                 Dv+l  +d+  f++h   L   S  F+a+ +    + ssv+     +i   d ++ ++e lL+++    ++   s + +e +L+aa+++++p  + ++ 
  CDO69282.1  29 DVVLGSKDRVLFRVHSYTLKTTSGWFRAMYSLP-QRGSSVVdipaeTI-YVDEDAATLEGLLRMVCGLPIPRLdSYDVIEPILHAAEKYDMPGPMSIVR 125
                 99******9************************.67777776777445.47889999999999886555554488899**************9887776 PP

                 HH CS
         BTB 105 ef 106
                  +
  CDO69282.1 126 AL 127
                 65 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHSEEEC-...CGGGHHHHHHHH..HHHT-HHHHH CS
         BTB  65 ealLefiYtgeleit...seenleelLaaa..dllqiprlkk 101
                 ea++   Yt +l+++    +++l++l + a  +l+q++++ +
  CDO69282.1 152 EAMMASRYTLTLNLHapeHRATLQKLSTEAllNLFQLHHVRR 193
                 578888899999998776556666665555557777777655 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.6e-05      0.34      13      31 ..     207     223 ..     200     228 .. 0.83
   2 ?   -3.6   0.0       1.9   8.5e+03      18      22 ..     243     247 ..     241     248 .. 0.85
   3 ?   -1.2   0.1      0.33   1.5e+03       2       9 ..     264     271 ..     263     279 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.6e-05
                   EETSTTCEEESSSSBEEEE CS
  TF_Zn_Ribbon  13 eDpergelvCtdCGlVled 31 
                   +  + g++ C+ CG+++++
    CDO69282.1 207 N--DAGDTSCSHCGTLVDY 223
                   3..589*********9987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
                   TCEEE CS
  TF_Zn_Ribbon  18 gelvC 22 
                   g++vC
    CDO69282.1 243 GDTVC 247
                   89999 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.33
                   EETTTTCE CS
  TF_Zn_Ribbon   2 kCPnCgst 9  
                   kC nC   
    CDO69282.1 264 KCHNCDRV 271
                   78888764 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00031       1.4       9      21 ..     207     219 ..     206     221 .. 0.87
   2 ?    0.9   0.2     0.089     4e+02       1       8 [.     264     271 ..     264     276 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00031
  zinc_ribbon_2   9 lqdnakFCpyCGt 21 
                    ++ +++ C++CGt
     CDO69282.1 207 NDAGDTSCSHCGT 219
                    6779999*****8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.089
  zinc_ribbon_2   1 fCpnCGae 8  
                    +C nC + 
     CDO69282.1 264 KCHNCDRV 271
                    799*9665 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00011      0.48      13      24 ..     208     219 ..     207     221 .. 0.87
   2 ?   -1.8   0.2      0.53   2.4e+03      18      22 ..     264     268 ..     262     272 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
  zf-ribbon_3  13 ssddnvCpyCGt 24 
                  +++d+ C +CGt
   CDO69282.1 208 DAGDTSCSHCGT 219
                  689*******97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.53
  zf-ribbon_3  18 vCpyC 22 
                  +C +C
   CDO69282.1 264 KCHNC 268
                  45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 1750.77
//
Query:       CDO69283.1  [L=440]
Description: hypothetical protein BN946_scf184976.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3049.49
//
Query:       CDO69284.1  [L=283]
Description: hypothetical protein BN946_scf184976.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-35  121.2   1.4    5.2e-35  120.7   1.4    1.2  1  adh_short        short chain dehydrogenase
    7.8e-35  120.5   3.6    1.3e-34  119.7   3.6    1.4  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.9e-05   24.6   4.1    0.00082   19.3   0.7    2.8  3  KR               KR domain
    0.00022   20.7   0.6     0.0027   17.2   0.6    2.2  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.042   13.0   0.1      0.077   12.1   0.1    1.6  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.087   12.9   0.1       0.15   12.2   0.1    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   1.4   1.7e-38   5.2e-35       1     189 [.      11     228 ..      11     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.7e-38
                 SEEEEESTTSHHHHHHHHHHHHTT.-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.......SSESEEEE---S.... CS
   adh_short   1 kvvlvtGassGIGraiakelakeG.akvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.......gkldvLvnNAGi.... 87 
                 +vvlvtGassGIG  iak l k+G a+v++v+r+ ++l +va+e       ++++ +Dv++ + ++al ++ ++          kld+L+nNAG+    
  CDO69284.1  11 RVVLVTGASSGIGSYIAKGLSKAGvARVYIVGRRVAQLVRVAQEAPGI---IIPLVGDVSTIAGCKALAKAFAESEkslavkeVKLDALINNAGMaare 106
                 59**********************446677**************9998...***********99999887765543334777789************** PP

                 ..........S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH........HCTTEEEEEEEEGGGTS..B-TTBHHHHHHHHHHHHHHHHHHHH CS
   adh_short  88 ..........tgsgpfselseeewervievNltgvflltravlpaml........kqssGrIvnvsSvagkv..pvagvaaYsAsKaavagltrslake 166
                           + + +  + ++e+w +v++vN+ ++ +l++a+lp+++        +q +G I+n +Sv +++  p a++  Y+AsKaa +++t +la  
  CDO69284.1 107 gnwadgaaveEVKDALLQATDEDWSKVFAVNVASIQWLSAALLPYLVsasqnggkAQGRGCIINNTSVSAFYvsPQAQGHLYAASKAAAESITLNLASK 205
                 ******99977777888999999***********************9**9999999999***********6522777899******************* PP

                 HGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 167 laptgirvnavaPGlvdTdmake 189
                 l + g+rvn++aP+ v ++++ +
  CDO69284.1 206 LTRLGVRVNSIAPANVPSELNSP 228
                 ****************9999876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   3.6   4.5e-38   1.3e-34       1     233 [.      17     279 ..      17     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 4.5e-38
                   TTTTSHHHHHHHHHHHTT.-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHH.......SSEEEEEE-----EG..... CS
  adh_short_C2   1 GaasgIGraiAkalaeeG.aevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekf.......gklDilvnnagiapk..... 82 
                   Ga sgIG  iAk l ++G a+v ++ ++ ++   + ++a+e +  +  l  DV+  + ++al+++ +e+         klD l+nnag+a +     
    CDO69284.1  17 GASSGIGSYIAKGLSKAGvARVYIVGRRVAQ---LVRVAQEAPGIIipLVGDVSTIAGCKALAKAFAESEkslavkeVKLDALINNAGMAARegnwa 110
                   899**************94456666555555...77777777777449*******9999988877766542225555699**********9999999 PP

                   .......CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH....HCTSC.........CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHH CS
  adh_short_C2  83 .......lkgpfletsreefdraldvnlyslfllakaalp....lmkeg.........gsivnlssvgaervvpnyn..aygaaKaalealtrylAv 157
                          +k  +l++++e++ ++++vn+ s+  l+ a+lp    +   +         g i+n +sv+a  v p+ +   y+a+Kaa e++t +lA 
    CDO69284.1 111 dgaaveeVKDALLQATDEDWSKVFAVNVASIQWLSAALLPylvsA---SqnggkaqgrGCIINNTSVSAFYVSPQAQghLYAASKAAAESITLNLAS 204
                   9999988899999***************************74322...135688888999**************99999****************** PP

                   HHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 158 elgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +l + g+RvN+++p  +  +++s  ++ d++++  ++ +p+gr+g+ e+v +a+++L s + syi+G+++  DgG+
    CDO69284.1 205 KLTRLGVRVNSIAPANVPSELNSP-DDPDSFISTEKDIIPIGRIGNEEDVVAAVVYLSSRAGSYISGNVIKLDGGI 279
                   ******************988765.56999*********************************************6 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.7   2.7e-07   0.00082       3      82 ..      13      86 ..      12     107 .. 0.81
   2 !    5.0   0.0    0.0069        21      94     123 ..     119     148 ..     111     159 .. 0.84
   3 ?   -0.9   0.0      0.43   1.3e+03      24      58 ..     183     216 ..     170     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.7e-07
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS-- CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppi 82
                +l+tG+  g+G  +a+ l + g +++ +++R+       ++l++  ++    +  +  Dvs  +  +al +++ ++e+++
  CDO69284.1 13 VLVTGASSGIGSYIAKGLSKAGVARVYIVGRR------VAQLVRVAQEAPGIIIPLVGDVSTIAGCKALAKAFAESEKSL 86
                79******************************......456888888876667777889999999888888887766543 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0069
                 ---TTT--HHHHHHHHTTTTHHHHHHHHHT CS
          KR  94 dklleemtaedleqvlapKvkGawnLhell 123
                 +++l + t+ed+ +v+a  v+ ++ L  +l
  CDO69284.1 119 KDALLQATDEDWSKVFAVNVASIQWLSAAL 148
                 6788999*****************999876 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.43
                 HS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE- CS
          KR  24 garhlvllsRsaaadedskaliaelealgaevevv 58 
                 ++ hl   s+  aa++   +l ++l++lg++v+ +
  CDO69284.1 183 AQGHLYAASKA-AAESITLNLASKLTRLGVRVNSI 216
                 55677777777.55666666788888888888765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.6   8.9e-07    0.0027       1     186 [.      13     235 ..      13     239 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.9e-07
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.............EEEE--TT-HH....HHHHHHHHHT-SEEEE--S---HHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl.............elveldltdrs....alerlfkeeqpdavihlAavggvaass 81 
                 +lVtGa+  iGs+++k l ++g+  v  + r+  +  + ++                ++  ++ + ++    +   ++ke++ da i+ A+ +  + ++
  CDO69284.1  13 VLVTGASSGIGSYIAKGLSKAGVArVYIVGRRVAQLVRVAQ--EapgiiiplvgdvsTIAGCKALAKAfaesEKSLAVKEVKLDALINNAGMAAREGNW 109
                 79********************5559999999433333222..14689*99999999444444444433322555577889*******99988888888 PP

                 HSHHHHHH.HHTHHHHHHHHHHH..HHTCTEEEEEEEGGGGT.........SCSS.....SS..BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH. CS
   Epimerase  82 edpadfie.knlqgtlnlleaar..kagvkrllflsSsevYG.........kdae.....qp..keettltgplkpnspYaaaKlageklveayaaqy. 160
                  d a++ e k++ ++ +  ++++  + +v   ++  S+++ +          +a+     +     +    +p ++   Yaa+K+a+e+++ ++a +  
  CDO69284.1 110 ADGAAVEEvKDALLQATDEDWSKvfAVNV-ASIQWLSAALLPylvsasqngGKAQgrgciINntSVSAFYVSPQAQGHLYAASKAAAESITLNLASKLt 207
                 88877766445555554444444333344.444444444444444444433444333332222333444445558999999999999999999887653 PP

                 ..T-EEEEEEESEEESTTS-TTSTTSHH CS
   Epimerase 161 ..glnaiilrlfnlyGprngegevsrvi 186
                   g+++ ++ + n+ ++ n +++++++i
  CDO69284.1 208 rlGVRVNSIAPANVPSELNSPDDPDSFI 235
                 3457778888888877776666666665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.6e-05     0.077       1      64 [.      13      67 ..      13     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvr 64
                     vlvtGa+  iGs + + + k  +++++++ r   +l ++++e         +   i+p++gdv 
       CDO69284.1 13 VLVTGASSGIGSYIAKGLSKAGVARVYIVGRRVAQLVRVAQEA------PGI---IIPLVGDVS 67
                     89***********************************999986......223...445555555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.9e-05      0.15      13      59 ..      11      58 ..       3     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
                  -EEEEES-SH.HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH 13 kkvlliGaGe.maelvakhLlakgvkkvvvaNRtlerakelaeelkge 59
                  + vl+ Ga   +++ +ak L+++gv +v +++R +++  ++a+e  g 
    CDO69284.1 11 RVVLVTGASSgIGSYIAKGLSKAGVARVYIVGRRVAQLVRVAQEAPGI 58
                  557888886538899***************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1757.44
//
Query:       CDO69285.1  [L=185]
Description: hypothetical protein BN946_scf184976.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.1   7.0       0.29   10.7   7.0    1.2  1  Spt20     Spt20 family
        8.8    4.5  10.7        9.2    4.4  10.7    1.0  1  PAT1      Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   7.0   3.2e-05      0.29     105     153 ..      52     118 ..      40     165 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.2e-05
       Spt20 105 q......dqkqsq..qnqqqqqqqqqqqqqqqq............qqeqqqqqnekdsttteekekksk 153
                 +      +q+  +  +++  ++ +q+qqqq +q            ++  qq q +   +++ ++  +s+
  CDO69285.1  52 PvypptqPQQ--PhpYQPPYSPPPQRQQQQHEQysgrpeqehkkhKKHHQQGQGQSGLHAQPQSHGPSP 118
                 2565432333..146888888888888888888444332222322333333333333333333333333 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  10.7     0.001       9.2     215     295 ..      49     124 ..      24     177 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.001
        PAT1 215 aaaaaaasqqPaaeqaeqaeaaaqaaka..eqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsass 295
                 ++a  + ++qP+    +++  +     +    ++q++++++++ ++++++++++++++qg+  + l+ + +++  +++ps+ +
  CDO69285.1  49 QPAPVYPPTQPQ----QPHPYQPP---YspPPQRQQQQHEQYSGRPEQEHKKHKKHHQQGQGQSGLHAQPQSHGPSPAPSSPP 124
                 111111112222....11111111...12212222222222233333333333333444443333332222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1229.57
//
Query:       CDO69286.1  [L=278]
Description: hypothetical protein BN946_scf184976.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-14   52.0   0.0    7.9e-14   51.6   0.0    1.2  1  ODC_AZ    Ornithine decarboxylase antizyme


Domain annotation for each model (and alignments):
>> ODC_AZ  Ornithine decarboxylase antizyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   4.4e-18   7.9e-14       9      94 ..     181     265 ..     173     278 .] 0.79

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 4.4e-18
      ODC_AZ   9 dyvggasfrgfvae.kvqertlfvfldksvlsedlkegLvaLlelAeeklecehlvicldrseeeelkdllraLqwvGfelvtldaw 94 
                  +  +++f g+v + +++ +t +v  ++ +++ +l+e++vaLl+lA+e+lec+ lvi l+rs +  l dll++L++vG+ +vt   +
  CDO69286.1 181 TPGEDTTFEGVVLSlPNTPKTFYVDGKH-AADVNLRESIVALLDLADEQLECNALVIALERSCP-VLGDLLHSLMYVGGTVVTKPPF 265
                 5667899999999954467788887665.99********************************5.5666***********9986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2019.37
//
Query:       CDO69287.1  [L=601]
Description: hypothetical protein BN946_scf184976.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-73  245.6   0.0    1.1e-72  245.2   0.0    1.1  1  PIF1             PIF1-like helicase
      6e-12   45.7   0.0    9.6e-12   45.0   0.0    1.3  1  AAA_30           AAA domain
      1e-06   28.3   0.0    0.00014   21.3   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00046   20.5   0.0     0.0013   19.1   0.0    1.7  1  AAA_19           AAA domain
     0.0015   18.9   0.0     0.0035   17.7   0.0    1.6  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.022   13.6   0.0      0.032   13.1   0.0    1.2  1  DUF2791          P-loop Domain of unknown function (DUF2791)
      0.029   14.1   0.6        5.4    6.7   0.1    2.9  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.031   14.1   0.1      0.066   13.1   0.1    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
       0.05   13.5   0.0        0.1   12.5   0.0    1.5  1  NACHT            NACHT domain
      0.092   10.7   0.1       0.98    7.3   0.0    2.0  2  Herpes_Helicase  Helicase


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.2   0.0   6.3e-76   1.1e-72       1     362 [.     149     484 ..     149     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 245.2 bits;  conditional E-value: 6.3e-76
                 ---HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH.HHHTSCCCHH CS
        PIF1   1 qLneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrtahsrfkiplekdeestc.kikrgsklae 98 
                 +Ln+eQ +++ +i++av ++++   Fv+G +G gKtfl +++++klrseg+ivl +A s  Aa l +gG+t+hs fk+p++ ++e+ +  i+++  + e
  CDO69287.1 149 KLNSEQYQIYTEIMDAVAHRRPLCAFVDGKAGRGKTFLVNTICNKLRSEGHIVLPTATSAFAAQLYPGGKTTHSVFKVPVGDENEELIsPIEPHDPRGE 247
                 69*******************************************************************************999999989********* PP

                 HHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH--EEEE-S-STTTT..... CS
        PIF1  99 llkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWkevkvlkLtknmRllseslde 197
                 l+ ++s+iiwDEapm++ +++  +++t r ++++   + p+GGk+vvl GDfrQ  Pv+++g+r++ v++si +S+lW++++v++L++ +R +++    
  CDO69287.1 248 LIREASVIIWDEAPMAKNTVLKCVEETCRRVMRN---NLPWGGKVVVLLGDFRQTCPVVRNGTREDVVNSSIISSPLWDKFSVFRLHQPIRNAED---- 339
                 *********************************8...89****************************************************9997.... PP

                 ......HHHHHHHHHHHCT---CCCCHH.................HHCHCCS---SS--...........EEEESSCCHHHHHHHHHHCCSSS--EEEE CS
        PIF1 198 tekkelkeFskwllkigdGkineedeeealieiPedlllkksedkieeivsevygdllqeltdkeyleerailcptnedvdeiNnyvlsklpgeekeyl 296
                        ++++++  igdG  +         ++P d+l  ++ +  +e++++vy++ +    d+ +  +rail+ptn++vd+ N+ +ls++ g  +++l
  CDO69287.1 340 ------LSYADFVDLIGDGAGP---------HVPLDML--QKVHDRNELIDFVYPSDVL--LDPALCLKRAILAPTNSQVDDYNDVILSRIDGYHRTFL 419
                 ......689999*******865.........3799999..77788899*******9444..6899999******************************* PP

                 -EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEE CS
        PIF1 297 ssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivt 362
                 +sDs  +s e+i++++     e + + ++ g+p h+L  kv  +  l+ N+ +++GL+  tr++v 
  CDO69287.1 420 ASDS-LQSPEDIDNTNPALLLEQARHASIPGIPAHSLTVKVHGVYRLMCNFAPDRGLVKNTRVVVA 484
                 ****.6777888888999999999999**************9999999***************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   5.3e-15   9.6e-12       8     182 ..     160     366 ..     149     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 5.3e-15
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk................grarlepgt 90 
                 ++++a+++ + ++a++ G AG GKt++++++ + ++++g+ v+  A ++ aA+    +    ++t++++ k                   + + +++++
  CDO69287.1 160 EIMDAVAHRRPLCAFVDGKAGRGKTFLVNTICNKLRSEGHIVLPTATSAFAAQLYP-G----GKTTHSVFKVPVgdeneelispiephdpRGELIREAS 253
                 4567778888899*************************988888887777766544.3....233343332222344566666677888733566777* PP

      AAA_30  91 llivDEagmvdtkqlaallkaaeka........gakvilvGDerQlasVeaGgvlrdlvea........agigtaeLtevvRqke.seeraaalalreg 172
                 ++i DEa m+ ++ l+ + + +++         g  v+l+GD rQ  +V + g+ +d+v++        +++ + +L++ +R +e  ++++ ++ + +g
  CDO69287.1 254 VIIWDEAPMAKNTVLKCVEETCRRVmrnnlpwgGKVVVLLGDFRQTCPVVRNGTREDVVNSsiissplwDKFSVFRLHQPIRNAEdLSYADFVDLIGDG 352
                 **********9988887777777655668888789999*********************9888888888888999999999997768999999999999 PP

      AAA_30 173 dae....ealeala 182
                   +    + l++++
  CDO69287.1 353 AGPhvplDMLQKVH 366
                 88754454555554 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.7e-08   0.00014       3     183 ..     172     349 ..     170     362 .. 0.80
   2 !    4.6   0.0    0.0089        16     281     305 ..     538     563 ..     524     589 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.7e-08
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke..ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhr 99 
                 + +V G+aG GKt + +++ ++l   ++e + v+ +   ++ + l+   + +    k   +++ e+l s i++ +      + +  +++ v+i DEA  
  CDO69287.1 172 CAFVDGKAGRGKTFLVNTICNKL---RSEGHIVLPTATSAFAAQLYPGGKTTHsvFKVPVGDENEELISPIEPHD-----PRGELIREASVIIWDEAPM 262
                 679********************...8888888999999999999988877775556666666666666666666.....888899************* PP

     DUF2075 100 lltksdqaekqseenqlkelmkr.akvvvalvDegQelntgeigteee.....lkklakkleveleekvhLksqfRvaaseaviewvdal 183
                 + ++  +  +++ +  +++ +    kvvv+l D  Q       gt+e+     +  +   l  +++  ++L++ +R a + +++++vd +
  CDO69287.1 263 AKNTVLKCVEETCRRVMRNNLPWgGKVVVLLGDFRQTCPVVRNGTREDvvnssI--ISSPLWDKFSV-FRLHQPIRNAEDLSYADFVDLI 349
                 ***88888888889999999999888**********999999999999744321..22222233333.49*****************966 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0089
     DUF2075 281 vgsey.tiQGleldyvgviiGpdlvy 305
                  ++++ ++QGl ld vgv + + +  
  CDO69287.1 538 YATTFnSCQGLTLDVVGVDLTRPVFS 563
                 5788878***********98887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.1e-07    0.0013       4     144 ..     164     302 ..     161     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.1e-07
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqe 102
                 av+  +  + +v + +G GKT ++++i++ l ++g     +i+l + t+  a +l           +T H++  + + d+++e  + +e ++ + +l +
  CDO69287.1 164 AVAHRRPLCAFVDGKAGRGKTFLVNTICNKLRSEG-----HIVLPTATSAFAAQLYPG-------GKTTHSVFKVPVGDENEELISPIEPHDPRGELIR 250
                 553344446789999*****************999.....567777777766666655.......4999*99888999999888999996666666656 PP

      AAA_19 103 ee.llivDEfqdvdelqyrLlkallgekkk.........lllvGDpdQliyv 144
                 e+ ++i DE+ + + +  + +++ + + ++         ++l+GD  Q+ +v
  CDO69287.1 251 EAsVIIWDEAPMAKNTVLKCVEETCRRVMRnnlpwggkvVVLLGDFRQTCPV 302
                 6669999******************6667789******99********9876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     2e-06    0.0035      11      63 ..     156     209 ..     151     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2e-06
      AAA_16  11 qL.lsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 q+ ++++++v+  rp + ++ G +G GK+ lv+++ + l+ +g i+l + +  +
  CDO69287.1 156 QIyTEIMDAVAHRRPLCAFVDGKAGRGKTFLVNTICNKLRSEGHIVLPTATSAF 209
                 4447889999********************************888877666555 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.032      39      86 ..     160     207 ..     150     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
     DUF2791  39 edlervaeggaafrfirGeYGsGKtFllqllreralergfvvaeadls 86 
                 e +++va+ +  + f+ G+ G GKtFl++++ ++ +++g +v     s
  CDO69287.1 160 EIMDAVAHRRPLCAFVDGKAGRGKTFLVNTICNKLRSEGHIVLPTATS 207
                 457899999999*************************99999876666 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        24       2      23 ..     174     199 ..     173     276 .. 0.68
   2 ?   -4.2   0.0       6.4   1.1e+04      89     100 ..     288     299 ..     287     309 .. 0.79
   3 ?   -3.5   0.0         4   7.1e+03      82     103 ..     408     429 ..     402     442 .. 0.74
   4 ?    6.7   0.1     0.003       5.4     185     227 ..     539     575 ..     519     582 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts....l 23 
                       v+G +G GK+ l+ +++++     +
       CDO69287.1 174 FVDGKAGRGKTFLVNTICNKLrsegH 199
                      59***************999554332 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6.4
  Viral_helicase1  89 klvilfGDplQi 100
                      k+v+l+GD +Q 
       CDO69287.1 288 KVVVLLGDFRQT 299
                      6799****9995 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4
  Viral_helicase1  82 laalskaklvilfGDplQipfh 103
                      l ++++ +  +l  D+lQ+p  
       CDO69287.1 408 LSRIDGYHRTFLASDSLQSPED 429
                      6677888888999999999876 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.003
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhr 227
                      +tt  ++qGlt d+V + l+++    ++  s+ +l++Al+R r
       CDO69287.1 539 ATTFNSCQGLTLDVVGVDLTRP----VF--SHGQLYTALSRIR 575
                      78999************99955....55..5789******955 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.7e-05     0.066       2      48 ..     537     577 ..     536     580 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRArek 48 
                 aya+t + +QG+  ++V v   dl+ +  +  ++  LYta++R r++
  CDO69287.1 537 AYATTFNSCQGLTLDVVGV---DLTRPV-F--SHGQLYTALSRIRHR 577
                 8*****************9...666554.3..3778*******8887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.8e-05       0.1       4      27 ..     174     197 ..     171     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.8e-05
                 EEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaeg 27 
                 ++ G+aG GKT L+  ++ +++++
  CDO69287.1 174 FVDGKAGRGKTFLVNTICNKLRSE 197
                 799****************99876 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.045        81      35      96 ..     152     212 ..     133     223 .. 0.62
   2 ?    7.3   0.0   0.00055      0.98     730     781 ..     536     586 ..     517     597 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.045
  Herpes_Helicase  35 epelewfrseldleeeeeselslPFsaylitGtAGaGkstsiqalaenldC....li.tgatvvAaq 96 
                      +++ +++ +++d  ++       P  a  + G AG Gk+  ++++ ++l      ++ t++ + Aaq
       CDO69287.1 152 SEQYQIYTEIMDAVAHR-----RPLCA-FVDGKAGRGKTFLVNTICNKLRSeghiVLpTATSAFAAQ 212
                      33344444444443333.....35555.589*************99998532222222555555665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00055
  Herpes_Helicase 730 sklamtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflvmdvnP 781
                         a t    qGl l+ v ++ +        ++Y alsR+++  + ++ + P
       CDO69287.1 536 PAYATTFNSCQGLTLDVVGVDLTRP-VFSHGQLYTALSRIRHRSHAKVRLLP 586
                      567889999**************99.999************99998877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3918.32
//
Query:       CDO69288.1  [L=861]
Description: hypothetical protein BN946_scf184976.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-57  192.8   0.1    1.2e-20   74.0   0.2    6.1  6  SNase     Staphylococcal nuclease homologue
    5.1e-21   75.0   0.0    1.3e-20   73.6   0.0    1.7  1  TUDOR     Tudor domain
  ------ inclusion threshold ------
      0.047   14.2   0.1       0.26   11.8   0.0    2.4  2  Agenet    Agenet domain


Domain annotation for each model (and alignments):
>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.2e-10   1.3e-06      19     107 ..       8      98 ..       3      99 .. 0.92
   2 !   13.6   0.0   1.2e-05     0.071       2      43 ..     156     198 ..     155     207 .. 0.85
   3 !   15.4   0.0   3.2e-06     0.019      54     106 ..     224     279 ..     219     281 .. 0.86
   4 !   42.1   0.1   1.6e-14   9.6e-11       2     105 ..     327     436 ..     326     439 .. 0.87
   5 !   74.0   0.2   1.9e-24   1.2e-20       2     107 ..     497     602 ..     496     603 .. 0.95
   6 !   10.3   0.0   0.00012      0.72      21     105 ..     757     851 ..     740     853 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.2e-10
                 TSTTHHHHHHHHHHHHHHCSSEEEEE-S..SBSTTSEEEEEEEETTEEHHHHHHHTTSSEE---BTTSTTTHHHHHHHHHHHHHTT-GGGC CS
       SNase  19 vqpfgkeAkeflkklvlqkkvvvleldk..kkDkygrllayvylnkknineeLvkeGlArvyevyekneekkkellkaeeeAkkkrkglWs 107
                  ++++ e++efl+ l ++k  + +  ++    D   r +++  +n+++++ eL+k+G A++    ++ +e++ + + +e+eA+++ kg+W+
  CDO69288.1   8 DEDWAFESREFLRGLAVGKPIIFTSTHSlpPSDDVPRDIGTAEINGIDLASELLKNGWAKLKDLKRDPTEEDLRKRDIEAEARAAGKGIWN 98 
                 578999***********99999999999999*****************************88888888888889999*************7 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
                 EEETTEE-STSS.BTTTTTSTTHHHHHHHHHHHHHHCSSEEEE CS
       SNase   2 vrLvgidaPeta.kpkktvqpfgkeAkeflkklvlqkkvvvle 43 
                 + L+g+++P+ a kp++  +++g+eAk f+++++lq+ v+v+ 
  CDO69288.1 156 IALAGVRSPRVAsKPGEVSEQWGEEAKFFTESRLLQRYVKVNL 198
                 88********8714556999***************99998865 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 3.2e-06
                 EEEEEEETTEEHHHHHHHTTSSEE---BTT...STTTHHHHHHHHHHHHHTT-GGG CS
       SNase  54 llayvylnkknineeLvkeGlArvyevyek...neekkkellkaeeeAkkkrkglW 106
                 ++++v   + ni+e Lv +GlArv+  +      +   ++l++ae+ Ak+kr  l 
  CDO69288.1 224 FIGSVLHPAGNIAEFLVSAGLARVVDWHAGmlaSSGGMERLRAAEKSAKEKRACLY 279
                 578999999**************999444336678999**************8876 PP

  == domain 4  score: 42.1 bits;  conditional E-value: 1.6e-14
                 EEETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-S...SBSTTSEEEEEEEET..TEEHHHHHHHTTSSEE--.-BTT..STTTHHHHH CS
       SNase   2 vrLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldk...kkDkygrllayvyln..kknineeLvkeGlArvye.vyek..neekkkell 92 
                 ++L++ + P+ ++pk+  + +++eA+efl+k++++k+v+v+++ +   +   ++r  a++ +   ++ni+e+L+++GlA++++  +++  ++ ++++l 
  CDO69288.1 327 LQLSSTRGPKISDPKQ--AYWAQEAREFLRKRLIGKHVKVHVDFIrprEGEFEEREAATIRYGgqNTNIAEQLIEKGLATAVRhKRDDedRSPDYDKLM 423
                 6788888999998888..99*********************9988885556789********9999**************99853333578899***** PP

                 HHHHHHHHTT-GG CS
       SNase  93 kaeeeAkkkrkgl 105
                 +ae+ A  + +g+
  CDO69288.1 424 AAEQLAATEGRGI 436
                 *******999998 PP

  == domain 5  score: 74.0 bits;  conditional E-value: 1.9e-24
                 EEETTEE-STSSBTTT.TTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET.TEEHHHHHHHTTSSEE---BTTSTTTHHHHHHHHHHH CS
       SNase   2 vrLvgidaPetakpkk.tvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln.kknineeLvkeGlArvyevyekneekkkellkaeeeA 98 
                 + L gi+aP+ta++ + + +p+g+e++ef+ ++ lq++v+++++d   Dk g +++ +yln  +n + +LvkeGlA+v+ +  +n    k+l++aeeeA
  CDO69288.1 497 LVLGGIRAPRTARNASeASEPYGSESAEFATRRYLQRDVEIEVYDA--DKSGGFIGALYLNkTENAAITLVKEGLATVHPYSADNLAWAKQLYEAEEEA 593
                 6799********8877689***************************..*************8899999*********9998888*************** PP

                 HHTT-GGGC CS
       SNase  99 kkkrkglWs 107
                 k++++++W+
  CDO69288.1 594 KQAKRNIWK 602
                 ********8 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.00012
                 TTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET..........TEEHHHHHHHTTSSEE--...-BTT.STTTHHHHHHHHHHHHHTT-GG CS
       SNase  21 pfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln..........kknineeLvkeGlArvye...vyek.neekkkellkaeeeAkkkrkgl 105
                 ++ ++A +  ++l+ ++k +  + d+   k+g+ll    ++           + in eLv+eGlA++ +    y +       +l++a + Ak++r g+
  CDO69288.1 757 DYHEDAIDRFRQLCEGRKLI-ANIDH---KEGQLLHLRLIDssnptvandpCECINVELVREGLAKIDRkgcRYISaYPSMARKLQEAIATAKRDRAGM 851
                 56666666666666633333.33333...3555555555555566666666788***********98664444555466788899999999***99998 PP

>> TUDOR  Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   2.2e-24   1.3e-20       3     121 ..     624     747 ..     622     747 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 2.2e-24
                 CCGEEEEEEEEEEETTEEEE....EEGGHHHHHHHHHHHHHHHHTSSCC.TCSSS--TT-EEEEEETTTTEEEEEEE.EEECTTTEEEEEETTTSBEEE CS
       TUDOR   3 edktievvvsaiespskfyi....qpkeqskkleklteelqeyyaskkk.aellapavgegcvavfsedgkwyRAki.teslddqkveVlfiDyGntet 95 
                 + ++++v++s++    +f +     + e  ++l kl++e + y++++++   ++ p+ g+ + a+fs dg+wyRA++ + s+ ++++eV fiDyGn  t
  CDO69288.1 624 KTEYMDVIISDVRTKPQFAFsiqiLNTEGIESLKKLMREFSLYHKTAAPaPAGFVPRAGDLVSAKFS-DGQWYRARVrRASPIKKEAEVTFIDYGNQDT 721
                 5799*********888887777889999*********************99999************9.******************************* PP

                 EEGGGEEE--GGGCSS-BSSEEEEET CS
       TUDOR  96 vpvsdlrelpseleelppqaikcrLa 121
                 v +sd+r+l++ +++lp qa  +rL+
  CDO69288.1 722 VGFSDIRPLDPRFRSLPGQAHDARLS 747
                 *********************99996 PP

>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.9   1.1e+04      50      59 ..     363     372 ..     356     373 .. 0.81
   2 ?   11.8   0.0   4.3e-05      0.26      14      61 .]     691     732 ..     683     732 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.9
      Agenet  50 wvdasdiRPl 59 
                 +v++ +iRP+
  CDO69288.1 363 KVHVDFIRPR 372
                 688999**97 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.3e-05
      Agenet  14 rGaWfrAtilkv.kegdkylVeYddlddddgskpleEwvdasdiRPlpp 61 
                 +G W+rA + +  + +++++V + d      ++    +v +sdiRPl p
  CDO69288.1 691 DGQWYRARVRRAsPIKKEAEVTFID-----YGNQ--DTVGFSDIRPLDP 732
                 799**********888999999999.....5555..5*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.53
# Mc/sec: 4876.71
//
Query:       CDO69289.1  [L=117]
Description: hypothetical protein BN946_scf184976.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-23   80.7   0.0      9e-23   80.4   0.0    1.1  1  Ribosomal_S6  Ribosomal protein S6


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0     5e-27     9e-23       2      90 .]       4      96 ..       3      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 5e-27
                  EEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTE....EEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  2 YElvfilrpelseeevkelvekvgklilenggvvrkveswGkrkLaypikkk....teGyyvlmnfdaspevikelertlrldervlRylivk 90
                  Y lv+i+ +  + + +k+lv++ ++ +l+nggvvr+++swG+r+L++++++     + G y++m+fdasp++++ l+ ++r d+rv+R++ +k
    CDO69289.1  4 YQLVCIAAHYPEYKHIKDLVTRAASHVLDNGGVVRRLDSWGTRTLPQRMRRAkmyyNIGDYWTMQFDASPSTLRGLNSIMRHDPRVIRWTSLK 96
                  99************************************************988899*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 794.64
//
Query:       CDO69290.1  [L=225]
Description: hypothetical protein BN946_scf184976.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   41.3   0.0    2.3e-10   40.4   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
    1.2e-09   38.5   0.0    5.4e-09   36.4   0.0    2.0  3  HAD_2           Haloacid dehalogenase-like hydrolase
      2e-07   31.6   0.0    5.1e-07   30.2   0.0    1.8  1  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   3.9e-14   2.3e-10       3      71 ..     140     211 ..     139     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 3.9e-14
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESS.SSS-TTTHHHHHHHHT-..--SE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVlt.Gvtrpedleepehkpty..vadd 71 
                      KP++e++++a e++g++p+e++ +GD l+ D  gA++ G++ +LV++ G +++e+++ep +  t   v+++
      CDO69290.1 140 EKPSCEIFRRACERMGVQPHETVHVGDELDCDYHGAKECGLEALLVRRpGPEGEEERKEPDEDLTNvnVVPH 211
                     6**********************************************9999999998887765555124555 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.36   2.2e+03       7      49 ..      12      53 ..       6      68 .. 0.75
   2 !   36.4   0.0     9e-13   5.4e-09     111     177 ..     117     184 ..     111     185 .. 0.94
   3 ?   -2.9   0.0         1     6e+03      76      93 ..     204     221 ..     195     223 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.36
       HAD_2  7 gTlldteeliiqafnelleeyglselseeelrkliglslrell 49
                 Tl+  +  i+  +++++e y l+ l+++ l++ + + l+++ 
  CDO69290.1 12 HTLVTPRLPIYVQYAQTFEPY-LGALDPDALKRAFKIALKQVQ 53
                577777777888889999888.778888888888877776654 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 9e-13
       HAD_2 111 ekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikvia 177
                   +e l++  ++d+++ se+ + +KP+ e++++a+e+++++++e++ vGD+   D ++ak+ g++++ 
  CDO69290.1 117 AVIEDLDLIPHLDTVLLSEEEGVEKPSCEIFRRACERMGVQPHETVHVGDELdCDYHGAKECGLEALL 184
                 6688999999******************************************9**********99876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
       HAD_2  76 kevkpydgvkelLeeLke 93 
                 ++v+++++v  ++e++++
  CDO69290.1 204 TNVNVVPHVSTVIEWVQQ 221
                 478999999999998865 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   8.6e-11   5.1e-07     143     210 .]     110     179 ..       3     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 8.6e-11
                 SEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 143 dnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                 d++ + +++++ l+   ++d v+ s++e+v kps e++++a+++++++p+e+++VGD +  D  ++++ g
  CDO69290.1 110 DDSLPTRAVIEDLDlIPHLDTVLLSEEEGVEKPSCEIFRRACERMGVQPHETVHVGDELDcDYHGAKECG 179
                 7788889999999999999*****************************************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1612.73
//
Query:       CDO69291.1  [L=871]
Description: hypothetical protein BN946_scf184976.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-31  107.3   1.1    6.1e-31  106.5   1.1    1.4  1  RRM_2     RNA recognition motif 2
      1e-12   47.7   0.0    0.00075   19.3   0.0    3.4  3  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    1.2e-06   28.6   0.0     0.0065   16.7   0.1    2.7  2  BRAP2     BRCA1-associated protein 2
  ------ inclusion threshold ------
       0.14   11.8   0.0        4.4    6.9   0.0    2.3  2  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_2  RNA recognition motif 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   1.1   1.4e-34   6.1e-31       1      97 []     692     788 ..     692     788 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 1.4e-34
       RRM_2   1 rttlliknipnkytkkmllaaideknkgtydflylpidfknkcnvgyafinlvepkkivafqkafngkkwekfnsekvaslayariqgkaaliaklq 97 
                 rtt++iknipnk + k ll+ i++ +    df+yl++df+n cnvgyaf+n++  + ++ f k+  g kw+ + sekv +++ya  qgk++l++k++
  CDO69291.1 692 RTTVMIKNIPNKMSDKDLLNFINKVCPRRIDFMYLRMDFQNGCNVGYAFVNFITVQDLLHFAKTQLGVKWNMYSSEKVLQMCYATYQGKESLVEKFK 788
                 8*********************************************************************************************996 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-07   0.00075       1      64 [.     235     295 ..     235     296 .. 0.95
   2 !    9.9   0.0   0.00014      0.62      44      69 ..     371     396 ..     341     397 .. 0.87
   3 !   14.5   0.1   5.3e-06     0.024       1      52 [.     695     749 ..     695     756 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.7e-07
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 l+V+n+p+ +    L e Fs  G++k i    +    ++g+ +  F + + A++Al++  g ++
  CDO69291.1 235 LVVRNVPRAAPSGALLEAFSSLGDVKGILARFQ---ANRGVIILAFYDTRHAQRALRHIAGHTF 295
                 79****************************997...*********************9988776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00014
                 EEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  44 VeFeskedAekAlealngkklggrel 69 
                 VeF + +dA++A +alng+++ g +l
  CDO69291.1 371 VEFCDCRDATQAYKALNGRTILGARL 396
                 9*******************998776 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 5.3e-06
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE....TTTSEEEEEEEEESSHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd....etgkskgfafVeFeskedA 52 
                 ++++n+p+ +++++L  + +k + +   i+ ++     ++g + g+afV+F +  d 
  CDO69291.1 695 VMIKNIPNKMSDKDLLNFINKvCPRR--IDFMYLrmdfQNGCNVGYAFVNFITVQDL 749
                 78*******************55555..444444447**************998875 PP

>> BRAP2  BRCA1-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00039       1.8      43      93 ..     265     315 ..     231     321 .. 0.88
   2 !   16.7   0.1   1.5e-06    0.0065       7      75 ..     692     763 ..     687     777 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00039
       BRAP2  43 dgkenrymvLikfkdqesadeFykefngkkFssleeevChvvfvkevevte 93 
                   + nr ++++ f d ++a++  ++  g++Fs l++   + vfv+  +v++
  CDO69291.1 265 RFQANRGVIILAFYDTRHAQRALRHIAGHTFSVLDDARLEAVFVSPAQVEK 315
                 56789999********************************99999888877 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.5e-06
       BRAP2   7 stllcilavPsylsladllkFvgsvlekvseiriirdgkenrymv...LikfkdqesadeFykefngkkFss 75 
                  t+++i  +P+++s +dll+F+++v+ +  +++ +r   +n + v    ++f + ++  +F k+  g k+++
  CDO69291.1 692 RTTVMIKNIPNKMSDKDLLNFINKVCPRRIDFMYLRMDFQNGCNVgyaFVNFITVQDLLHFAKTQLGVKWNM 763
                 6899********************************666664443112666666666667777666666665 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.028   1.3e+02      44      89 ..     249     295 ..     215     322 .. 0.75
   2 ?    6.9   0.0   0.00098       4.4      66     103 ..     368     405 ..     335     424 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.028
       RRM_5  44 lFnlfclYgnvervkf.lktkketalvqmgdasaveravqHLnnakl 89 
                 l   f+  g+v+ +   ++  ++  ++   d+++++ra+ H+ +++ 
  CDO69291.1 249 LLEAFSSLGDVKGILArFQANRGVIILAFYDTRHAQRALRHIAGHTF 295
                 666778888888887624456788888999*************9864 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00098
       RRM_5  66 talvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 t  v+  d++++ +a + Ln+ ++ g rl ++  K   
  CDO69291.1 368 TFHVEFCDCRDATQAYKALNGRTILGARLTLISNKDAL 405
                 45699*************************98777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 6595.75
//
Query:       CDO69292.1  [L=1234]
Description: hypothetical protein BN946_scf184976.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-67  225.2   0.0    1.5e-66  224.5   0.0    1.3  1  SNF2_N        SNF2 family N-terminal domain
    1.6e-21   76.0   0.0      3e-21   75.1   0.0    1.4  1  HIRAN         HIRAN domain
    3.8e-16   59.7   0.0    1.3e-15   58.0   0.0    2.0  1  zf-PARP       Poly(ADP-ribose) polymerase and DNA-Ligase Zn-f
    1.1e-11   45.0   0.0    2.9e-05   24.4   0.0    2.7  2  Helicase_C    Helicase conserved C-terminal domain
    1.4e-08   34.4   5.4    2.9e-08   33.4   5.4    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    3.9e-08   33.5   0.0    8.6e-08   32.4   0.0    1.6  1  ResIII        Type III restriction enzyme, res subunit
    2.3e-07   30.5   4.7    4.5e-07   29.6   4.7    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    3.7e-07   30.4   4.9      7e-07   29.5   4.9    1.5  1  zf-RING_2     Ring finger domain
    1.1e-06   28.3   6.2      2e-06   27.5   6.2    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    2.5e-06   27.3   3.1    4.6e-06   26.5   3.1    1.4  1  zf-RING_5     zinc-RING finger domain
    3.1e-06   27.1   7.6    6.5e-06   26.1   7.6    1.6  1  zf-RING_UBOX  RING-type zinc-finger
    6.2e-05   23.1   6.7    0.00012   22.1   6.7    1.5  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    0.00041   20.6   3.2     0.0011   19.2   3.2    1.7  1  zf-rbx1       RING-H2 zinc finger domain
     0.0014   18.5   0.0     0.0034   17.2   0.0    1.6  1  DEAD          DEAD/DEAH box helicase
     0.0087   15.9   5.5      0.012   15.5   4.4    1.7  2  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.085   13.0   0.6        0.2   11.8   0.6    1.7  1  WW            WW domain
        5.1    6.9   6.4         13    5.6   6.4    1.8  1  zf-RING_11    RING-like zinc finger


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   0.0   1.4e-69   1.5e-66       1     349 [.     449     802 ..     449     803 .. 0.84

  Alignments for each domain:
  == domain 1  score: 224.5 bits;  conditional E-value: 1.4e-69
                 HHHHHHHHH..........................................HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---....... CS
                 xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkReq...nlqdleaalrkllktldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtla 96 
                 +Q++a+kw ++ e     + d  +++++ + + +g k y+ ++ +++ +e ++  +  rG + aD mGLGKT+++lalila ++   + +      + +
  CDO69292.1 449 HQSQALKWCMQHEYpelPKSDSDKPVQFWQLRNRGGKTYYYNIATKTPQEAPP--ALGRGALCADSMGLGKTLTMLALILATKS---DIPL-----NYS 537
                 9*******855543111345566777877777766666665565555555554..4689*********************4443...4443.....478 PP

                 S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHHT...................TTS-S-S-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxx RF
      SNF2_N  97 gptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelq.............kkrsvlkqvewkrvv 182
                 + tLivvP s++ +We++i+ hv+s+al+ +vy g+      n+ ++p+ l+ +dvv+ttY++++ e++l              k  + l +v wkr++
  CDO69292.1 538 NSTLIVVPLSVMSNWEKQIKDHVKSGALTYCVYYGK------NRSLSPAELKSFDVVVTTYQTVAIEHDLAsankaeaptakkqKTDKGLFDVPWKRII 630
                 99*********************************5......6789**********************999***********999999*********** PP

                 ES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-.TTTT--HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
      SNF2_N 183 lDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLr.eepfgekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdv.... 276
                 lDEgh+++n  +k+a+av+ L++++rw+ltGTPi ns +dl +Ll fLr ++p+++ ++f++++ rp +  +++g++ L+ l++++++rr+k+      
  CDO69292.1 631 LDEGHNIRNPRTKMAKAVCALNAERRWVLTGTPIINSPKDLGSLLTFLRiCRPLDQEDFFKRMVLRPLKDGDPAGAEILRALMSQICIRRTKEMQdkdg 729
                 ************************************************9559****************************************9885543 PP

                 .--.S---EEEEEEEEE--HHHH.HHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 .xx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 277 .ek.nlPpkteeiiflklskver.ksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpql 349
                  +   lPp +  +i++ ls+ er ++Y  + + + + +   ++++  ++  + +   +++l+ll++lrq + hp l
  CDO69292.1 730 nSLvPLPPVEMTMIRVTLSPRERqELYDAVEQLSKQRVGTLIQQHGSINAAAVQ---SNVLSLLTRLRQLVLHPGL 802
                 322359*************99973689977777777666666666555544333...669***********99987 PP

>> HIRAN  HIRAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   2.8e-24     3e-21       3      91 ..     191     281 ..     189     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 2.8e-24
                 EEEEEEECGGGCCT..---TTEEEEEEE-TT-SS-TT-EEEEETTS-EEEEE-HHHHHHHHHHHHTTSSEEEEEESS-TTT....EEEEEEEE CS
       HIRAN   3 sfevsvvglsyysgtgylkpgtevilerepnnpadanavrvlnergfeiGrlprevakwlspLldsgfitfegvvvdapek....nlkvgltv 91 
                 ++ ++vvg++yy+g   + pg+evil+rep+n++d+na++v n  g+++G++pr +a+ l+pL+dsg it+egv+   + +    +l++ l++
  CDO69292.1 191 MLKTNVVGVQYYKG--LVGPGEEVILQREPHNKYDRNAIQVKNIGGTQVGHIPRNIAAKLAPLMDSGEITVEGVMHEGNLSgfaySLSMTLKI 281
                 6789**********..**********************************************************9887766665555555555 PP

>> zf-PARP  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   1.2e-18   1.3e-15       1      81 [.       8      88 ..       8      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.2e-18
                EE-S-S--B-SS...S-.-B--SSSEEEEE-...------EEEEHHHHHTSSS--S-GGG.......EETTTTS-HHHHHHHHHH CS
     zf-PARP  1 EyAksgrakCkk...Ck.kkIakgelRlgkkveieeseskrWyHvgCftekqiknkketkeieeeeeiegfeeLekedqekvrda 81
                Ey+ks+ra+C++   Ck ++I+ g+lR+g+++++++ e+ +W+H+gC+t   +++ +  k     e+i+gf +L + dq k+r a
  CDO69292.1  8 EYSKSSRATCHGpppCKgSTIELGTLRYGQVQKGRYGETVEWRHWGCVTRDILEKLASLK----LESIPGFMDLYPADQSKIRLA 88
                9******************************9**999***************99888885....578***************976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.8e-08   2.9e-05       2      63 ..     928     989 ..     927     996 .. 0.91
   2 !   17.8   0.0   3.1e-06    0.0033      69     111 .]    1107    1149 ..    1076    1149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.8e-08
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn 63 
                 k+++l+ ll l+ e +k+l+f+++++ l+k+   l k gi +++++g+++++ r+e+++qf 
  CDO69292.1 928 KIDQLITLLRLTPESDKSLVFSQFTSFLDKIAEALDKAGIPYVRFDGKMSARRRQEVIAQFS 989
                 8999999*99******************9945555888***********************4 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.1e-06
                  EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C   69 vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111 
                  +Li+ ++++ G++++ +n+V  +d++++     q+i+R+ R+g
  CDO69292.1 1107 MLISLKAGALGLNLTVANNVYLMDPWWQEGIESQAIDRCNRIG 1149
                  89***************************************86 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   5.4   2.7e-11   2.9e-08       1      39 [.     847     884 ..     847     884 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.7e-11
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPl 39 
                 +CpiC+ +l++p ++t CgH fC  Ci + + +  +CP+
  CDO69292.1 847 ECPICFGELSEP-RITFCGHMFCLACISEVIARDPKCPM 884
                 6***********.*************************5 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   8.1e-11   8.6e-08      32     170 ..     512     664 ..     443     665 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 8.1e-11
                 STTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH......... CS
      ResIII  32 aTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee...... 121
                   G GKTl++++li + ++  + +    +l++vp +s+++ +++++k+  ++ +   + ++ g++++ +  + ++ +++vtt+q++  + + +      
  CDO69292.1 512 SMGLGKTLTMLALILATKSDIPLNysnSTLIVVP-LSVMSNWEKQIKDHVKSGALTYC-VYYGKNRSLSPAELKSFDVVVTTYQTVAIEHDLAsankae 608
                 57**************999876667746666666.89***********9999987544.4444444444788899************999888888888 PP

                 .......HHHTTT-S....EEEEETGGGTTS..TTTHHHHHT---SEEEEEESS-S CS
      ResIII 122 ..eeeseellrdrfd....viiiDEaHrlgak.kswreilekfkeavllglTATpe 170
                   + ++++ +++ fd     ii DE H+++   +++ +++ ++++  +  lT+Tp 
  CDO69292.1 609 apTAKKQKTDKGLFDvpwkRIILDEGHNIRNPrTKMAKAVCALNAERRWVLTGTPI 664
                 88777777777777788889**********97558888888888888888999996 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   4.7   4.2e-10   4.5e-07       1      40 [.     848     884 ..     848     884 .. 0.97

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.2e-10
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPl 40 
                 CpiC+ e++ep  ++ C+H fC +Ci++++   +  kCP+
  CDO69292.1 848 CPICFGELSEPR-ITFCGHMFCLACISEVIA--RDPKCPM 884
                 ************.******************..8899*96 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   4.9   6.7e-10     7e-07       2      44 .]     847     886 ..     846     886 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 6.7e-10
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 eCpIC+ els+++ +    CgH+f+  C+++ +++ ++CP+ r
  CDO69292.1 847 ECPICFGELSEPRITF---CGHMFCLACISEVIARDPKCPMDR 886
                 9********9877777...*********************865 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   6.2   1.9e-09     2e-06       3      47 ..     846     889 ..     844     891 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.9e-09
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpi 47 
                 eeC+iC+ + ++  +  CgH+ +C +C +++ +r++kCp+ rrp 
  CDO69292.1 846 EECPICFGELSEPRITFCGHM-FCLACISEVIARDPKCPMDRRPL 889
                 69*******************.********************996 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   3.1   4.3e-09   4.6e-06       1      42 [.     847     885 ..     847     887 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.3e-09
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiC 42 
                 +C++Cf +l   +++ +t CgH+fC +C+++  +++ +Cp+ 
  CDO69292.1 847 ECPICFGEL---SEPRITFCGHMFCLACISEVIARDPKCPMD 885
                 6********...99**************************85 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   7.6   6.2e-09   6.5e-06       1      39 []     848     883 ..     848     883 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.2e-09
  zf-RING_UBOX   1 CpIClelftdP..lvlpCGHtFCreClwelskslegafkCP 39 
                   CpIC+ ++++P  +   CGH FC  C+   s+   +  kCP
    CDO69292.1 848 CPICFGELSEPriT--FCGHMFCLACI---SEVIARDPKCP 883
                   ***********533..5**********...88888888888 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   6.7   1.2e-07   0.00012       1      30 [.     848     877 ..     848     884 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.2e-07
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqk 30 
                 CPiC   L++P    CGh fCl Cis++  
  CDO69292.1 848 CPICFGELSEPRITFCGHMFCLACISEVIA 877
                 **************************9865 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   3.2     1e-06    0.0011      12      55 .]     846     886 ..     839     886 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1e-06
     zf-rbx1  12 eacieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 e+c+ c  + +e   +    CgH F l Cis+ + +  +CP++r
  CDO69292.1 846 EECPICFGELSE-PRI--TFCGHMFCLACISEVIARDPKCPMDR 886
                 467777777776.344..45**********************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.3e-06    0.0034      12     134 ..     503     638 ..     495     670 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.3e-06
                 HTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  12 lgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrldd 110
                 l g+  l+a   G GKTl +l  +l++ ++   +  + +liv+P+   + +  +++k   k   l+++ ++ g++++   ++l ++ d+vv+t + ++ 
  CDO69292.1 503 L-GRGALCADSMGLGKTLTMLALILATKSDIPLNYSNSTLIVVPLSV-MSNWEKQIKDHVKSGALTYC-VYYGKNRSLSPAEL-KSFDVVVTTYQTVAI 597
                 4.5667888889*******999999776665899999*******975.67888999999997667777.66668888999999.99********88875 PP

                 HH.............HCTSSH..CTTE..EEEEEETHHHHH CS
                 xx.............xxxxxx..xxxx..xxxxxxxxxxxx RF
        DEAD 111 ll.............stgkln..lsqv..rflVlDEadrll 134
                                +++k +  l +v  + ++lDE +++ 
  CDO69292.1 598 EHdlasankaeaptaKKQKTDkgLFDVpwKRIILDEGHNIR 638
                 33356777777776522332244666644558888888776 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.28   2.9e+02      29      41 ..     844     856 ..     843     860 .. 0.76
   2 !   15.5   4.4   1.1e-05     0.012       1      39 [.     848     888 ..     848     893 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.28
  Prok-RING_4  29 dlssCPlCqrris 41 
                  d + CP+C  ++s
   CDO69292.1 844 DCEECPICFGELS 856
                  5678****87765 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.1e-05
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdskdls..sCPlCqrr 39 
                  C +C  + +++++  CgH++C +C ++       CP+ +r 
   CDO69292.1 848 CPICFGELSEPRITFCGHMFCLACISEVIARdpKCPMDRRP 888
                  89999999******************99555579*987765 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   0.00019       0.2      11      27 ..     482     497 ..     477     497 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
                 TTTT-EEEEETTT--EE CS
          WW  11 pdsGrvYYyNheTgetq 27 
                 +  G++YYyN  T++ q
  CDO69292.1 482 RG-GKTYYYNIATKTPQ 497
                 55.***********987 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.4     0.013        13       1      29 []     847     872 ..     847     872 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 eC IC  e+ +    +i+ C+H+F + CI
  CDO69292.1 847 ECPICFGELSE---PRITFCGHMFCLACI 872
                 9********54...55667*****99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 7945.40
//
Query:       CDO69293.1  [L=406]
Description: hypothetical protein BN946_scf184976.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-06   28.2   0.0    3.5e-06   27.7   0.0    1.2  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.9e-10   3.5e-06      61     204 .]      22     193 ..       3     193 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.9e-10
                  HHH.....TSEEEEEC-TTS...CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTE.EEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC. CS
  Metallophos  61 vky.....pipvylllGNHe...gfeeellnkygylgifsepwrsdaevfnnlplaslgsgs.lkvlllhGg.spellvsldklgslnleleapepg. 147
                   +      + p y ++GNH+   g   ++++ y+++    +  +++++ f+ l+  + ++++   ++ ++G  + e  +   +l + ++ + ++ +  
   CDO69293.1  22 RSIfaaqdHLPMYYIPGNHDiglG---SSSSTYRFS---EHALERYQSNFGPLNQRASVGNHtALLIDAPGLvD-E--DRYRSLAGMTFAQWSEAHPd 110
                  333444556899********4332...444444444...56666777779999999988888765666666631.2..23333333333333333333 PP

                  ..HHHHHH...HHHHTTCSEEEEEESSESS.....................CSSSCSCCHHHHH....HH.HHHTTESEEEEESSSSE CS
  Metallophos 148 ..dewlkd...lekrekadwvivlgHsply.....................rgsgylfgdeale....dl.lkkygvdlvisGHtHvy 204
                      + +    + ++++++  i+++H+pl                       g+++l            + l+  ++ +++sG++H y
   CDO69293.1 111 rtVAFVRSfarNTDPSQGERPILFTHVPLFrpegaacgplrergtlrqgrgLGYQNLL-----SeqasQFlLQSIKPSIIFSGDDHDY 193
                  43444444777899****************9999888888888888555444444444.....25555555***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2772.69
//
Query:       CDO69294.1  [L=147]
Description: hypothetical protein BN946_scf184976.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-07   29.3   0.0    7.1e-07   29.0   0.0    1.2  1  Ten1_2    Telomere-capping, CST complex subunit


Domain annotation for each model (and alignments):
>> Ten1_2  Telomere-capping, CST complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.9e-11   7.1e-07      22     113 ..      24     133 ..       6     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.9e-11
      Ten1_2  22 ssvRtlGrLksydvatsratltakeeskqaelkvetdl.vepfea.....rlgslyqviGelekekedgei.................vlrARvlrcvd 97 
                 + +R+ GrL + d+++s+ ++    +++++ l v+++l ++p  +     + g++++ +G+le   e + +                 vl+A v++   
  CDO69294.1  24 RKLRVAGRLLHHDTENSTILI----HDGEDALLVDVSLcLSPGASspwlrEPGTIVMALGYLELL-ERSVPlpvlsahapdvavnprlVLKAIVAQEAR 117
                 579******************....9************9999888899999*************9.666668*************************** PP

      Ten1_2  98 gldldlyekaleerrk 113
                 +ld+++++ka+++r++
  CDO69294.1 118 DLDMAVWNKAIDAREE 133
                 ************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1065.95
//
Query:       CDO69295.1  [L=504]
Description: hypothetical protein BN946_scf184976.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.1e-198  657.8   0.9   5.9e-198  657.6   0.9    1.0  1  UDPGP           UTP--glucose-1-phosphate uridylyltransferase
  ------ inclusion threshold ------
       0.11   12.4   0.2       0.26   11.2   0.0    1.8  2  Thioredoxin_15  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.6   0.9  6.5e-202  5.9e-198       1     413 []      61     469 ..      61     469 .. 0.99

  Alignments for each domain:
  == domain 1  score: 657.6 bits;  conditional E-value: 6.5e-202
       UDPGP   1 lesFkklferyleekskqekidwdkieplpeeevvdyedlkekeeekkellnklavlkLnGglGtsmGckgpKslieVrdgktfLdlivqqieelnkky 99 
                 ++sF+ lf+ryl+e+++++++dwd+i++++e+++++y +l      + + lnklavlk+nGglGtsmG++g+Ks++eV+d++tfLdl+v+qie+ln+++
  CDO69295.1  61 MQSFFYLFTRYLAERARSQELDWDRIKSPSEDKIIPYAKL---PPGNVSNLNKLAVLKVNGGLGTSMGMTGAKSALEVKDDMTFLDLTVRQIEHLNTTH 156
                 789*************************************...4457899************************************************* PP

       UDPGP 100 nvdvPlvlmnSfnTdedtekilkkykkkkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiFvsniDN 198
                  vdvPl+lm+SfnT+edt +i+kky++++ +i+tfnqsryPri ke+llp++++a+ ++k++wyPpGhGdly++L +sg+ld+llaeGkey+Fvsn+DN
  CDO69295.1 157 RVDVPLILMTSFNTHEDTLRIIKKYANQQLRITTFNQSRYPRIFKETLLPCPRTAD-DDKKHWYPPGHGDLYNALMHSGVLDQLLAEGKEYLFVSNSDN 254
                 ******************************************************96.678*************************************** PP

       UDPGP 199 lgatvDlkilnllvekkaeflmevtektradvkgGtlieyegklrlleiaqvpkehveefksvkkfkifntnniwinlkalkrlveekelkleiivnkk 297
                 lga+vD kil++++++k ef+mevt+kt+ad+kgGtli+y+g++rlle+aqvp+eh+e+fksv+kfkifntnn+wi+lkalkr++e++ ++l+iivn+k
  CDO69295.1 255 LGAVVDEKILQHMIDSKSEFIMEVTDKTKADIKGGTLIDYDGQIRLLEVAQVPNEHIEDFKSVRKFKIFNTNNLWIDLKALKRVMENEGMELDIIVNPK 353
                 *************************************************************************************************** PP

       UDPGP 298 tldegekviqletavgaaiksFkkavginVpRsrflpvkttsdlLlvksdlysleegslvlnpkrsfktvplvkLgsefkkveefqkrfksipslleld 396
                 t+d+g+ viqleta+gaaik+F++a+g+nVpRsrflpvk++sdlLl+ksd+ysle+g+lv+n++r+f+t+p++kLg++fkk+++fqkrfk+ip++leld
  CDO69295.1 354 TTDDGQAVIQLETAAGAAIKHFNNAHGVNVPRSRFLPVKSCSDLLLIKSDIYSLEHGQLVINQNRMFETTPVIKLGDHFKKIQQFQKRFKKIPKILELD 452
                 *************************************************************************************************** PP

       UDPGP 397 hltvsGdvtfgknvtLk 413
                 hltv+Gdv+fg+nvtL+
  CDO69295.1 453 HLTVTGDVYFGRNVTLR 469
                 ***************97 PP

>> Thioredoxin_15  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.96   8.6e+03      49      88 ..     148     185 ..     143     193 .. 0.65
   2 ?   11.2   0.0   2.9e-05      0.26      48      93 ..     333     380 ..     330     444 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.96
                     HHHHHHH-TTEEEEEEE--S--SS-THHHHHHHHHTGGGG CS
  Thioredoxin_15  49 AlkflksspgvRlgiihnpssdseasslissalsaalkkl 88 
                      +++l +++ v + +i   s ++++ +l  ++++++ +++
      CDO69295.1 148 QIEHLNTTHRVDVPLILMTSFNTHEDTL--RIIKKYANQQ 185
                     5677777777777777777777666666..5665555554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.9e-05
                     HHHHHHHH-TTEEEEEEE--S--SS-THH..HHHHHHHTGGGGCT-SS CS
  Thioredoxin_15  48 eAlkflksspgvRlgiihnpssdseassl..issalsaalkklknlea 93 
                     +Alk ++++ g++l+ii np+++++ + +  +++a+ aa+k+ +n + 
      CDO69295.1 333 KALKRVMENEGMELDIIVNPKTTDDGQAViqLETAAGAAIKHFNNAHG 380
                     79*********************8866664566777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3766.30
//
Query:       CDO69296.1  [L=469]
Description: hypothetical protein BN946_scf184976.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2792.96
//
Query:       CDO69297.1  [L=540]
Description: hypothetical protein BN946_scf184976.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-31  107.1   1.1    2.3e-28   98.1   0.5    2.4  2  U3_assoc_6  U3 small nucleolar RNA-associated protein 6
    5.3e-05   23.7  15.6      0.095   13.6   1.2    5.6  6  TPR_14      Tetratricopeptide repeat
     0.0014   17.8   1.7     0.0072   15.5   0.1    2.3  2  NRDE-2      NRDE-2, necessary for RNA interference
  ------ inclusion threshold ------
       0.24   10.6   3.8       0.44    9.7   0.0    2.6  3  TPR_15      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.5     5e-32   2.3e-28       4      83 .]       1      81 [.       1      81 [. 0.99
   2 !    7.1   0.0    0.0012       5.6      42      74 ..     164     196 ..     156     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 5e-32
  U3_assoc_6  4 mlpeledleekglFtkeEikeIvkkrrkfEyklqrrgkkkedflkYieyElnLeklrkkRrkrlkl.kkkksksdysivrR 83
                ml el+dl +kglFt++Eik+I++kr++fE++l+rr +kk+dfl+Y++yE++Le+lr+kR +rlkl k   s+sdy++v+R
  CDO69297.1  1 MLAELKDLVQKGLFTQKEIKQIMQKRTAFETALVRRIPKKSDFLRYATYEMSLEALRRKRAERLKLpKGPPSVSDYALVKR 81
                899****************************************************************99*********998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0012
  U3_assoc_6  42 kkedflkYieyElnLeklrkkRrkrlkl..kkkks 74 
                 ++e + +Y+++E+n  + ++ R++ l++  k   +
  CDO69297.1 164 SIEMWREYVRMEMNFVESLRRRWSVLGIdiK--GK 196
                 678899********************99542..33 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0024        11      22      43 ..      84     105 ..      80     106 .. 0.92
   2 ?    2.2   0.1     0.097   4.3e+02      25      42 ..     121     138 ..     117     140 .. 0.83
   3 !   13.6   1.2   2.1e-05     0.095       3      43 ..     132     173 ..     130     174 .. 0.85
   4 ?   -2.2   0.1       2.5   1.1e+04      19      34 ..     330     345 ..     323     356 .. 0.57
   5 !    8.5   0.6   0.00088       3.9      13      41 ..     403     431 ..     392     434 .. 0.82
   6 ?   -1.0   0.2         1   4.5e+03       4      39 ..     431     465 ..     430     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0024
      TPR_14  22 allrralalaPddaeawlllaq 43 
                 ++++ral+++ +d  +w+++ q
  CDO69297.1  84 QIFERALKKFKGDVGLWIQYIQ 105
                 789****************998 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.097
      TPR_14  25 rralalaPddaeawllla 42 
                  ral+l+P+ ++++ l a
  CDO69297.1 121 ARALQLHPNVPALYVLAA 138
                 79*******999998776 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 2.1e-05
      TPR_14   3 allalaeallalG.dpdeAiallrralalaPddaeawlllaq 43 
                 al+ la+a++     p +A+all+r l+l+ d+ e w+++++
  CDO69297.1 132 ALYVLAAAHELEHlSPSAARALLQRGLRLNADSIEMWREYVR 173
                 67778888777664699**********************997 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.5
      TPR_14  19 eAiallrralalaPdd 34 
                  A ++l +a+++  +d
  CDO69297.1 330 SANDVLSAAVRTSDGD 345
                 4445555555554444 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.00088
      TPR_14  13 alGdpdeAiallrralalaPddaeawlll 41 
                  +  p++ ++l+r+  a+aP+da++wl+ 
  CDO69297.1 403 KANSPEKILRLARKHTARAPADARVWLAR 431
                 567899********************975 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawl 39 
                 +l++ +a++a G+ + A a +r +++ +P+ a++wl
  CDO69297.1 431 RLDAEKAFAAPGEVESAWAEARGRVE-GPALADVWL 465
                 67777889999999999988888877.777777775 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.6e-06    0.0072      43     116 ..      75     179 ..      50     186 .. 0.90
   2 ?    0.9   0.1     0.044     2e+02      53      94 ..     410     451 ..     409     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-06
      NRDE-2  43 rkalaeiklsilekAleknksnpdserLllelLklgseiwdse..................................klakeWeellkenpnsvkLWre 107
                  +al++++ +i+e+Al+k    + +  L +++++ ++++ + +                                  + ++  ++ l+ n +s+++Wre
  CDO69297.1  75 DYALVKRQFQIFERALKKF---KGDVGLWIQYIQVAKKEGARAlvgritaralqlhpnvpalyvlaaahelehlspsAARALLQRGLRLNADSIEMWRE 170
                 678999*************...899****************99999999999999999999999999999999999888889999999*********** PP

      NRDE-2 108 yldfrqsnf 116
                 y+ ++++ +
  CDO69297.1 171 YVRMEMNFV 179
                 ***999855 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.044
      NRDE-2  53 ilekAleknksnpdserLllelLklgseiwdseklakeWeel 94 
                 il+ A ++++++p + r+ l++L + + + ++ ++++ W e+
  CDO69297.1 410 ILRLARKHTARAPADARVWLARLDAEKAFAAPGEVESAWAEA 451
                 788888899889999999999999999999999999999876 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.7e-05      0.44     124     178 ..      74     129 ..      46     135 .. 0.90
   2 ?    1.3   0.1     0.037   1.6e+02     148     186 ..     133     171 ..     129     177 .. 0.71
   3 ?   -1.8   0.1      0.31   1.4e+03     139     160 ..     418     439 ..     402     467 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.7e-05
      TPR_15 124 kdydriaellksle.eeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapd 178
                  dy  ++++++  e ++++++++   ++ +++++++eg+ +   r+  +Al+l p+
  CDO69297.1  74 SDYALVKRQFQIFErALKKFKGDVGLWIQYIQVAKKEGARALVGRITARALQLHPN 129
                 6899999999999956999**********************************998 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.037
      TPR_15 148 fllaraelyrqegqtdaAlrdyreAlalapdsselraal 186
                  +++ a+ +++   + aA  +++++l+l++ds e+  ++
  CDO69297.1 133 LYVLAAAHELEHLSPSAARALLQRGLRLNADSIEMWREY 171
                 556666677777778888888888888888877766555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.31
      TPR_15 139 eeaaeqsaafllaraelyrqeg 160
                 +++a  +a+++lar  ++++ +
  CDO69297.1 418 TARAPADARVWLARLDAEKAFA 439
                 2233344444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3495.77
//
Query:       CDO69298.1  [L=713]
Description: hypothetical protein BN946_scf184976.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-34  117.1   0.0    8.4e-21   74.5   0.0    3.0  3  Pkinase      Protein kinase domain
    1.2e-18   67.3   0.0    2.8e-18   66.1   0.0    1.5  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0021        19       1      20 [.      86     105 ..      86     111 .. 0.87
   2 !   34.4   0.0   1.6e-12   1.4e-08      21      92 ..     137     209 ..     131     229 .. 0.91
   3 !   74.5   0.0   9.3e-25   8.4e-21      99     198 ..     260     372 ..     231     388 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0021
                 EEEEEEEEEESSEEEEEEEE CS
     Pkinase   1 yekleklGeGsfGkVykave 20 
                 +e+++klG+Gs+++Vy ++e
  CDO69298.1  86 FEVVRKLGSGSYAVVYLVRE 105
                 6789************9986 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.6e-12
                 TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHH CS
     Pkinase  21 ketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerk 92 
                 +e g+++A+K+++k + +++   + l E +i+++l  hpniv+l +++e+++ l+l+leyv+g++l  +le+ 
  CDO69298.1 137 TEYGREYAIKVLSKANLDEEALMAQLFEATIHQSLPaHPNIVTLHRTLETPSFLLLLLEYVPGEDLYYFLEQA 209
                 56799**************99999***********99******************************999943 PP

  == domain 3  score: 74.5 bits;  conditional E-value: 9.3e-25
                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET............TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCB.SHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLide............kgelKitDFGlakelessskltsfvgtseYlAPEvl..keney.skkvDvWs 182
                  + ++++q++e+++ +H+++++HrD+KpeN+++ +            k ++K+tDFGl++   +s  ++  +g+  Y++ E     +  y  +++DvWs
  CDO69298.1 260 LIASMFSQMCEAVATCHDHSVFHRDIKPENFIVTDgwttlpdgrverKVVVKLTDFGLSTTDVES--ADMDCGSAPYMSFECRnnLHPTYsPRAADVWS 356
                 567899***************************97688888776654444*********988775..5999**********9865334554789***** PP

                 HHHHHHHHHHSS-STT CS
     Pkinase 183 lGvilyelltgkppfs 198
                 lG++l+++l+  +p+ 
  CDO69298.1 357 LGIVLINMLYHINPWT 372
                 *************998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   3.1e-22   2.8e-18      23     200 ..     135     366 ..      86     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.1e-22
                  TTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT....................... CS
  Pkinase_Tyr  23 ekekkevkVavKtl.keeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk....................... 95 
                  ++++   + a+K+l k++ +ee   + l ea+i ++l  hpniv l+      + ll+++eyv+g dL  fL++                        
   CDO69298.1 135 QSTEYGREYAIKVLsKANLDEEALMAQLFEATIHQSLpAHPNIVTLHRTLETPSFLLLLLEYVPGEDLYYFLEQArdhfepdpsspdlstsplssdss 232
                  455667789*****555666666777788**********************9999*******************9*********************** PP

                  ...................CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE............TTEEEE-STTTHEETTTSSEEEET CS
  Pkinase_Tyr  96 ...................ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse............nkvvkisDfGLardiekddeyvkk 162
                                       ++++l+ + s+  q++++++  +++++ Hrd+   N ++++            + vvk++DfGL+ +       +++
   CDO69298.1 233 casrtpptpsllsslnpaqILSRTRLRLIASMFSQMCEAVATCHDHSVFHRDIKPENFIVTDgwttlpdgrverKVVVKLTDFGLSTTD-----VESA 325
                  ***************998867778888899******************************************9888**********976.....5555 PP

                  TSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 163 eeaklpvkWmapEslkekk...ftsksDvWsfGvllwEift 200
                  +    +  +m+ E+ ++ +      ++DvWs G++l+ ++ 
   CDO69298.1 326 DMDCGSAPYMSFECRNNLHptySPRAADVWSLGIVLINMLY 366
                  66667889******9999866344789*********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4872.19
//
Query:       CDO69299.1  [L=283]
Description: hypothetical protein BN946_scf184976.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-29  100.8   0.3    1.8e-28   99.9   0.0    1.6  2  Cyclin    Cyclin
    0.00035   20.3   0.0    0.00035   20.3   0.0    1.6  2  Cyclin_N  Cyclin, N-terminal domain
  ------ inclusion threshold ------
       0.21   10.7   8.9       0.29   10.3   8.9    1.2  1  Med3      Mediator complex subunit 3 fungal
        1.2    8.7   9.5        1.5    8.3   9.5    1.2  1  Spt20     Spt20 family


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0     4e-32   1.8e-28      45     161 .]      31     145 ..       6     145 .. 0.92
   2 ?   -3.0   0.8       1.8   8.2e+03      24      34 ..     259     269 ..     245     280 .. 0.42

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 4e-32
                 ...........T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-H CS
      Cyclin  45 ttfaqtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKflvDlsysnekfakvggisl 143
                 +++  +     F+++ +p isi +yl r+ +f++++  +ll tl Y+d++v       +v+ s++ hR++i+a+ v++K l+D+++sn+ +akvggi++
  CDO69299.1  31 IATTPSESLTRFHSRTPPGISILDYLRRIVRFTKAERSCLLITLHYIDQVVA--RMPIFVLSSLTCHRFVIAAIAVSSKCLCDTFSSNSMYAKVGGIPV 127
                 44555566779*****************************************..789****************************************** PP

                 HHHHHHHHHHHHHTTT-- CS
      Cyclin 144 kELnkLEidFlflvdFdl 161
                  E+n LE + l ++d++l
  CDO69299.1 128 GEFNVLERELLRMIDWRL 145
                 **************9975 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
                 ----------T CS
      Cyclin  24 asadsksnlen 34 
                 ++++++++ ++
  CDO69299.1 259 QQEQQQQQQQQ 269
                 11111111111 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.8e-08   0.00035      33     126 ..      51     145 ..      37     146 .. 0.84
   2 ?   -3.6   0.8         2     9e+03      10      19 ..     260     268 ..     252     276 .. 0.38

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.8e-08
                 HHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS.---CC..CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  33 ilidwlvevaekfkltpetlflavnyldRflskk.svpkd..klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                 +++d+l ++++ +k ++++l++++ y+d+++++  ++  +  + ++ +++++ +++K   +   + + ++ +  + +   e++ +Er++L+ ++++l
  CDO69299.1  51 SILDYLRRIVRFTKAERSCLLITLHYIDQVVARMpIFVLSslTCHRFVIAAIAVSSKCLCDTFSSNSMYAKV--GGIPVGEFNVLERELLRMIDWRL 145
                 589*****************************8843333357****************77754444433333..5899*****************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
                 HCHTS-STTC CS
    Cyclin_N  10 elkflpkpdy 19 
                 ++++++ ++ 
  CDO69299.1 260 QEQQQQ-QQQ 268
                 221111.111 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.9   6.4e-05      0.29     145     232 ..     189     275 ..     155     283 .] 0.49

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.4e-05
        Med3 145 aastPtttatPgantktaakslpapnatatigtptnsaaaaattatttssqakk.PrkPrqtkk.aaakaaakaqaqaqaqaqaqqqvla 232
                 a+  P +++ P a +  +a+ +    +t   g+p+ +   +++    +++ ++  P  P   +  a a+ + + q+q+q+q q+qqq  +
  CDO69299.1 189 ATPSPSASPPPAAHPDPHAHVAQFGGST---GSPSAARREPSAILIDPATLPQEaPPPPTVEQNmAFAAFQQEQQEQQQQQQQQQQQRSG 275
                 3344455555566666666665554444...44443222232223334444443133333333323444444555555555555555444 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.5   0.00034       1.5     111     130 ..     249     273 ..     216     283 .] 0.51

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00034
       Spt20 111 q.....qnqqqqqqqqqqqqqqqqq 130
                 +      +q+qq+qqqqqqqqqqq 
  CDO69299.1 249 NmafaaFQQEQQEQQQQQQQQQQQR 273
                 1344442233333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1667  (0.0929779); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1963.65
//
Query:       CDO69300.1  [L=184]
Description: hypothetical protein BN946_scf184976.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-24   83.6   0.1      1e-23   82.9   0.1    1.3  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    5.8e-13   49.1   0.1    1.4e-12   47.9   0.1    1.7  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1   1.1e-27     1e-23       3      65 .]       5      69 ..       3      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.1e-27
  Ribosomal_L11_N  3 k...vvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkdkkglripVkitvyqdrsf 65
                     +   +vk+++lr ++G+++++++l+p++GplGl++kk++++++kaT+ +kglr++V++t+ q+r++
       CDO69300.1  5 FdpnEVKIIYLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATSAWKGLRVTVQLTI-QNRQA 69
                     555599******************************************************.***96 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   1.6e-16   1.4e-12       2      70 .]      74     162 ..      73     162 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.6e-16
                    --SHHHHHHHHHTXS...................SXXSSTTTSXX..EEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   2 tPptsylLkkaagie...................kgsgkpgketv..GtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    +P++s+l++ka++                     ++++k++k++   G+v+++++  IA++++s++ a+ +l + +k+ilgtA+s+G++V
     CDO69300.1  74 VPSASSLVIKALKGVyitghmghcgiltlgyaepPRDRKKEKNIKhsGNVTFDEILDIARTMRSKSLAK-TLANGAKEILGTAQSVGCTV 162
                    79**********85557777777777776666665777777763367****************766677.******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1324.18
//
Query:       CDO69301.1  [L=1081]
Description: hypothetical protein BN946_scf184976.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.5e-224  745.5   0.5   1.3e-223  743.7   0.1    1.8  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    6.6e-27   94.3   0.0    1.4e-26   93.3   0.0    1.5  1  Anticodon_1   Anticodon-binding domain of tRNA
    2.1e-12   46.5   0.9    3.4e-05   22.8   0.3    3.6  3  tRNA-synt_1g  tRNA synthetases class I (M)
  ------ inclusion threshold ------
      0.021   14.2   0.0       0.15   11.4   0.0    2.3  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  743.7   0.1  2.9e-227  1.3e-223       2     600 ..      21     643 ..      20     645 .. 0.98
   2 ?   -0.3   0.0     0.054   2.4e+02     328     392 ..     849     914 ..     822     931 .. 0.78

  Alignments for each domain:
  == domain 1  score: 743.7 bits;  conditional E-value: 2.9e-227
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  + + W + d+f+++l+ ++ k++f+++dgPP++tG +H+Gh la t+kdiv+r ++ +G++v++++GwD++Gl++e++++kklg++ +++++klg ++
   CDO69301.1  21 VIQYWRDIDAFQTSLKLSEGKPDFSFYDGPPFATGLPHYGHLLAGTIKDIVTRHAHASGYHVTRRFGWDTHGLPVEHEIDKKLGITSRDDVMKLGIDK 118
                  6799********************************************************************************************** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv..eykdkkdalihvafpla 195
                  +++++r+++++ya+e+r++v+r+G+++Dfd++y+Tl+  ++e+v+++f++l++k ++yrg +++++st l t+ls++E+   yk+++d++i+vafpl 
   CDO69301.1 119 YNAECRAIVMRYASEWRRTVERMGRWIDFDNDYKTLNITFMESVWWAFKQLFEKNMVYRGLRVMPYSTGLLTPLSNFEAnlAYKEVNDPAITVAFPLV 216
                  ******************************************************************************9778**************** PP

  tRNA-synt_1 196 dkeevklviaTTtPeTllgdtavavnpeldyv.....itkeklilaeallkslvkke.sek.kiledergkeLegkevelpl.......vnrkipiia 279
                  d+++++l ++TTtP+Tl++++a++v+p+  y+      +++++i+ e+llk+l+k   + k k   +++g++++g ++ +++       +++++++++
   CDO69301.1 217 DDRSTSLLAWTTTPWTLPSNLALCVHPDYTYIkihdqERDQNFIIHENLLKTLYKDPkKAKfKKIATFKGSDMKGWRYVPLFeyfteqfEDKAFRVLN 314
                  ****************************9999999988999**************994444666679********************99********* PP

  tRNA-synt_1 280 ddyvdkeaGtGvVkiaPahdedDyevgkkynl.....evinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpi 372
                  d yv++e GtG+V++aPa++edD++v+ ++++      +++++d+ g++t+e+++f+gl+v++a+k + + lk+kg+l+ +++i+h++pfc+rs++p+
   CDO69301.1 315 DTYVTAEDGTGIVHQAPAFGEDDHRVAIENGVlrqedMPPCPIDDAGRFTQEVPDFAGLHVKAADKEIQKVLKNKGRLIVQSTINHTYPFCWRSGTPL 412
                  ********************************99998889********************************************************** PP

  tRNA-synt_1 373 iyrateqWfvrvkeladaalkavekvqfvpks.kekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekea 469
                  iyr+ + Wfvrv++++d+++++++++++vp+  +e r+ +w++n++dW++SR+r+WG++ipl+vs+++ee+v++ +++el++      + +++l+++ 
   CDO69301.1 413 IYRVIPVWFVRVQPIVDDLVANNKETRWVPQNiGEGRFGNWIQNARDWNVSRNRYWGTPIPLWVSDDMEEIVCVGSVEELEK--LSGVKGITDLHRDK 508
                  *******************************99********************************************99999..888899999***** PP

  tRNA-synt_1 470 kdkl....kkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrK 563
                  +d++    +k+kg+l+++e+v+D+WF+Sgs+p+++ +yp+e++e ++++fpad+++eG+D++rgW+++l++ls++l+g++P+k+++v+glv++e+G+K
   CDO69301.1 509 IDHItipsQKGKGQLKRIEEVFDCWFESGSMPYAQSHYPFENKELFERTFPADFVSEGIDQTRGWFYTLLVLSTHLFGRAPWKNLIVTGLVLAEDGKK 606
                  ************************************************************************************************** PP

  tRNA-synt_1 564 mSKslgNvidpldvikkygadalRltlilsdvgrdin 600
                  mSKsl+N++dp+ +i++ygada R++l++s+ +r  n
   CDO69301.1 607 MSKSLKNYPDPNLIIDQYGADATRMFLVNSPIVRGDN 643
                  ******************************9988655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.054
  tRNA-synt_1 328 aefeglkvfdarkkvveelkekglllkaekiehsvpfc.erskkpiiyrateqWfvrvkeladaal 392
                  +  + l vf+a+ + +e++k   +++++e +   + f+ + + + + yra+  W v   +l++++ 
   CDO69301.1 849 TPLRELLVFHADPAWLEDVKSLQRYVQSELNVRDIVFTsDEHLAGVKYRAVADWAVLGRKLRKDLG 914
                  56677889999999999999999999999988888775156667899*******999999998865 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   3.1e-30   1.4e-26       1     150 [.     698     853 ..     698     855 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 3.1e-30
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.raaqevllevletllrllaPfmPfitEelwqr...... 91 
                  drwil+++++l++ v+e ++ yr+++++ +l + ++++l +wy++++++rl++e++ ++  aa ++l+e l tl++ ++  +Pf+tE ++q+      
   CDO69301.1 698 DRWILARCQSLIRLVREEMAAYRLYTIIPRLLD-LIDELTNWYIRFNRRRLKGEDGVEDtVAALNTLFETLLTLCQTMSSYTPFLTESIYQElrrfip 794
                  9********************************.59*****************99999954488*********************************9 PP

  Anticodon_1  92 eeeelgkkesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsselkv 150
                  e    g+ +si+  ++pe k+e+ ++++ e++v++++ ++++ r+lr++ +++ +++l+ 
   CDO69301.1 795 EDPNAGDRRSIHFLPFPEvKEEYFDEDI-ERKVKRMQTVIELTRNLRERHNLSLKTPLRE 853
                  66677999**********8888778778.89************************99875 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.3   7.6e-09   3.4e-05       8      68 ..      51     112 ..      49     187 .. 0.87
   2 !    6.5   0.0   0.00064       2.9     185     239 ..     421     478 ..     378     487 .. 0.69
   3 !   13.3   0.0   5.9e-06     0.026     313     371 ..     591     651 ..     561     664 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.6e-09
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH.TTS-HHHHHH CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek.egvtpeelve 68 
                   p+a+g +H Ghll   + Di++R+  ++g++v+   g D+hG p+e + +k  g+t ++ v 
    CDO69301.1  51 PFATGLPHYGHLLAGTIKDIVTRHAHASGYHVTRRFGWDTHGLPVEHEIDKkLGITSRDDVM 112
                   7899******************************************9976515887766544 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00064
                   EE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET....T CS
  tRNA-synt_1g 185 ffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP....g 239
                   f +++ + ++l +  +e++   ++  +    +w+++  +d+++sr+  wG p+P    +
    CDO69301.1 421 FVRVQPIVDDLVANNKETRWVPQNIGEGRFGNWIQN-ARDWNVSRNRYWGTPIPlwvsD 478
                   555555555554444333322344445567899999.9****************66543 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 5.9e-06
                   S-EEEE--E.EE--------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE-HHHH CS
  tRNA-synt_1g 313 kkvvaheyl.tvegkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldfswedf 371
                   k++++++ +   +gkK+SkS ++  +++ +++++ ad+ R +l+     + ++l f+++ +
    CDO69301.1 591 KNLIVTGLVlAEDGKKMSKSLKNYPDPNLIIDQYGADATRMFLVNsPIVRGDNLRFREAGV 651
                   455666655055789****************************984455566666666555 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.18   8.1e+02      20      49 ..      54      83 ..      41      85 .. 0.86
   2 ?   11.4   0.0   3.4e-05      0.15     232     283 ..     584     636 ..     565     656 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.18
                  TS--BHHHHHHHHHHHHHHHHHHHTT-EEE CS
  tRNA-synt_1e 20 ydashlGhaRslvafDilrrilqalgYdvq 49
                      h Gh  +  + Di+ r  +a+gY+v+
    CDO69301.1 54 TGLPHYGHLLAGTIKDIVTRHAHASGYHVT 83
                  5678***********************996 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.4e-05
                   HSSS--EEEEEEE--.EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS CS
  tRNA-synt_1e 232 afdkqlvkyflhngh.lkiegekmsksLknfitikdvlkkfdprqlRllllsa 283
                   +f++   k  + +g  l  +g+kmsksLkn+   + ++ ++ + + R++l++ 
    CDO69301.1 584 LFGRAPWKNLIVTGLvLAEDGKKMSKSLKNYPDPNLIIDQYGADATRMFLVNS 636
                   5564444444455551556899**************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1081 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 6697.75
//
Query:       CDO69302.1  [L=229]
Description: hypothetical protein BN946_scf184976.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-07   31.0   0.0    3.5e-07   30.3   0.0    1.4  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    7.4e-07   29.4   0.1    1.2e-06   28.7   0.1    1.4  1  zf-met       Zinc-finger of C2H2 type
    6.9e-05   22.8   3.0    0.00022   21.2   3.0    1.9  1  SNRNP27      U4/U6.U5 small nuclear ribonucleoproteins
    0.00075   19.6   0.0     0.0014   18.7   0.0    1.3  1  zf-DBF       DBF zinc finger
  ------ inclusion threshold ------
      0.018   15.8   0.1      0.036   14.9   0.1    1.5  1  zf-C2H2_4    C2H2-type zinc finger
      0.019   15.4   0.2      0.034   14.6   0.2    1.4  1  zf-C2H2      Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.2e-10   3.5e-07       2      26 ..     101     125 ..     100     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.2e-10
                  CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSKkH 26 
                  fYC++C++++k++  +  H+++++H
   CDO69302.1 101 FYCEVCNRTYKDSAGYLDHINGRAH 125
                  9************************ PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1     4e-10   1.2e-06       1      25 []     101     125 ..     101     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4e-10
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 fyCe+Cn+t+++ + + +H +G+ H
  CDO69302.1 101 FYCEVCNRTYKDSAGYLDHINGRAH 125
                 8**********************99 PP

>> SNRNP27  U4/U6.U5 small nuclear ribonucleoproteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   3.0   7.4e-08   0.00022       1      20 [.     210     229 .]     210     229 .] 0.93

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.4e-08
     SNRNP27   1 eeeeemmklmGfggFdtTkg 20 
                 +ee+ mm++mGf+gF+tTk+
  CDO69302.1 210 QEEDSMMAMMGFAGFGTTKK 229
                 5899**************95 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.7e-07    0.0014       4      27 ..     101     127 ..      99     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.7e-07
      zf-DBF   4 GYCEnCrvkfedle...eHlksekHrk 27 
                  YCE+C+ +++d     +H++ + H +
  CDO69302.1 101 FYCEVCNRTYKDSAgylDHINGRAHLR 127
                 6**********9655559*******75 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.2e-05     0.036       1      20 [.     101     120 ..     101     123 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHl 20 
                 f+C++C+++++++ ++l+H+
  CDO69302.1 101 FYCEVCNRTYKDSAGYLDHI 120
                 89*****************8 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.1e-05     0.034       1      21 [.     101     121 ..     101     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                 EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                 ++C++C++++k++  +  Hi+
  CDO69302.1 101 FYCEVCNRTYKDSAGYLDHIN 121
                 89*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2079  (0.115957); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1519.05
//
Query:       CDO69303.1  [L=452]
Description: hypothetical protein BN946_scf184976.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00046   20.1  12.3    0.00046   20.1  12.3    3.0  3  Apolipoprotein   Apolipoprotein A1/A4/E domain
     0.0044   16.9   8.5        1.3    8.8   0.2    4.1  4  Peptidase_M41    Peptidase family M41
     0.0044   17.4   3.0     0.0044   17.4   3.0    4.1  4  Gp-FAR-1         Nematode fatty acid retinoid binding protein
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.034   14.0   0.2    1.8  1  HATPase_c_3      Histidine kinase-, DNA gyrase B-, and HSP90-
      0.021   15.5   0.3      0.021   15.5   0.3    2.8  3  DUF5398          Family of unknown function (DUF5398)
       0.03   14.5   4.6      0.091   13.0   1.6    2.4  2  MIEAP            Mitochondria-eating protein
      0.065   13.7   0.2        1.3    9.6   0.0    2.4  2  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
      0.089   13.0   2.2         20    5.4   0.2    3.2  3  Sep15_SelM       Sep15/SelM redox domain
      0.093   13.3   0.5      0.093   13.3   0.5    5.6  6  DUF883           Bacterial protein of unknown function (DUF88
       0.95   10.1   3.8        2.5    8.8   0.0    3.3  4  QIL1             MICOS complex subunit MIC13, QIL1
       0.96    9.9   4.6        2.6    8.5   4.6    1.7  1  Fox-1_C          Calcitonin gene-related peptide regulator C 
        1.4    9.0   4.7        7.1    6.7   0.6    3.3  3  Cbl_N            CBL proto-oncogene N-terminal domain 1
        9.3    6.6   7.6       0.59   10.4   0.3    2.8  3  Syntaxin-18_N    SNARE-complex protein Syntaxin-18 N-terminus


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   9.3e-05      0.13      82     153 ..     181     252 ..     138     259 .. 0.76
   2 !   20.1  12.3   3.3e-07   0.00046      29     185 ..     183     384 ..     173     388 .. 0.77
   3 ?    3.0  17.5     0.061        84      11     179 ..     269     445 ..     260     451 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
                     HHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SS CS
  Apolipoprotein  82 lrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerls 153
                     + + l++++ +lqe  ++ ++++   l+++  +l ++l+   +elr + +++  e k+  ++ ++++++ +s
      CDO69303.1 181 IFDVLRKRSSQLQELGQQAGKDAFGALSEKYPQLSEKLGGSYDELRRMAQKHGPEAKKLYDETTQQIKDIFS 252
                     334567788888888888888999999999999999999999999999999888888888888888877555 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3.3e-07
                     HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH...............HHHH.CHHCCHHCHCCHCHHHHHH CS
  Apolipoprotein  29 drlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelre...............rlaa.daeelqeqlavyaeelrer 107
                     d l k++ +l++  ++  +++  +l+++  ++ e+lg + +elr+  + +  e ++                l++   +++q+ ++++ +e+r+ 
      CDO69303.1 183 DVLRKRSSQLQELGQQAGKDAFGALSEKYPQLSEKLGGSYDELRRMAQKHGPEAKKlydettqqikdifskGLSQeSFDQAQQLIQSKTAEIRKI 277
                     55667777777777777777777777777777777777777777777777777777555555555558887555546777777777777775555 PP

                     HHHH....HHHHHHHHCHHHHHHH.....................HHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XX CS
  Apolipoprotein 108 lerh....vealkarlapyveelr.....................qklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerlean 177
                     ++++    + +  +  +py+++l                      ++  ++++e+ ++++++ae+ +++  +++++l++ + ++aee ++++  +
      CDO69303.1 278 AQSSsqdaWNRAMKEASPYLDKLPeikkflaenqdkfiaagaatlSGGSSSAQEIFQKIKEAAESDGAKNKQKLKDLQDFVQKKAEEAQQQASGQ 372
                     55555445999999999*************************9999999*****************************************99988 PP

                     XX....XXXXXX CS
  Apolipoprotein 178 le....elkaql 185
                     le    +l++++
      CDO69303.1 373 LErgweSLQDWV 384
                     885555677666 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.061
                     HHHCCHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHH CS
  Apolipoprotein  11 ayaeeleeqlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelr 105
                     ++++e+++   + +q++++r  ke+  + ++l     e ++ l++  d + +  +++l +  +  +++ ++++e ++ d  + +++l+  ++ ++
      CDO69303.1 269 SKTAEIRKIAQSSSQDAWNRAMKEASPYLDKL----PEIKKFLAENQDKFIAAGAATLSGGSSSAQEIFQKIKEAAESDGAKNKQKLKDLQDFVQ 359
                     33444444444444555555555555555555....66666666666666666666666666666666666666666666666666666666666 PP

                     HHHHHHHHHHHHHHCHHHHHHH.........HHHHHHHHHHHH-----..---...--SSSHHHHHHHTS-TTSHHHHHS--XXXX CS
  Apolipoprotein 106 erlerhvealkarlapyveelr.........qklaerleelkeslaphaeeve...erlssrveelrekleeqaeelrerleanle 179
                     +++e++ ++   +l+  +e+l+         ++  +rl ++k  ++ + e++e     +++++e++ + lee+ ++ ++  e++++
      CDO69303.1 360 KKAEEAQQQASGQLERGWESLQdwvrtmpggEEALKRLPDVKIFVKVSQERSEdakKLAEETYEAVLQVLEEKGKKAKQLTEEVKD 445
                     66666666666666666666666665555554555555555555544433333222444555555555555555555555555555 PP

>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.034        47     138     171 ..     141     174 ..     131     189 .. 0.82
   2 !    8.8   0.2   0.00094       1.3     108     175 ..     215     279 ..     210     282 .. 0.77
   3 ?    0.2   0.0      0.43   5.9e+02      64      90 ..     317     343 ..     291     385 .. 0.66
   4 !    5.6   0.8    0.0095        13     141     176 ..     407     442 ..     392     449 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.034
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  Peptidase_M41 138 eetaeeideevkelveeayerakeileekreele 171
                    +++++   +ev+++v++ ye+++ i++++   ++
     CDO69303.1 141 DQLRDSHGDEVNKIVSDGYEEVRVIIKDNGSGVD 174
                    566777789******************9977665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00094
                    -TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH CS
  Peptidase_M41 108 sdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealae 175
                    s+klG    +e  +  + ++++ +++k + e+t+++ d   k l +e++++a++++++k  e++++a+
     CDO69303.1 215 SEKLGGSY-DELRR--MAQKHGPEAKKLYDETTQQIKDIFSKGLSQESFDQAQQLIQSKTAEIRKIAQ 279
                    55555544.22222..334556777888888888888999999***********************98 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.43
                    HHHHHHHHHHHHHHHHHHS-BGGGHHH CS
  Peptidase_M41  64 arlavllGGraaEelifgevttGasnD 90 
                    a  a+l GG  + + if+++   a++D
     CDO69303.1 317 AGAATLSGGSSSAQEIFQKIKEAAESD 343
                    444555566666777777766666666 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0095
                    HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH CS
  Peptidase_M41 141 aeeideevkelveeayerakeileekreelealaea 176
                     +e  e+ k+l ee+ye++ ++leek ++ ++l+e+
     CDO69303.1 407 SQERSEDAKKLAEETYEAVLQVLEEKGKKAKQLTEE 442
                    555567889999999999999999999999999886 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.25   3.5e+02      85     136 ..      92     143 ..      80     156 .. 0.87
   2 !   17.4   3.0   3.2e-06    0.0044      36     122 ..     197     285 ..     179     318 .. 0.72
   3 ?   -0.6   5.0       1.1   1.6e+03      35     118 ..     325     368 ..     273     382 .. 0.50
   4 ?   -2.7  11.0         5   6.9e+03      35     141 ..     325     433 ..     302     451 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.25
    Gp-FAR-1  85 kgrkleaqvlagekpdlselkkvaktifnkykslseeakaelekaFpeivkf 136
                  + k++a +l+++  d++e  +  ++++ +y  l++ a+  +++ F  + ++
  CDO69303.1  92 YYEKTKATILENAPRDPNEALNYLRDVARSYLVLIPGARPHVDAVFDTVDQL 143
                 5668899999999*********************************998877 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 3.2e-06
    Gp-FAR-1  36 yknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlse..lkkvaktifnkykslseea 122
                  +  +++  al +k+p+L ek+   + +l++  +k +peak++ ++  ++++ + ++ l++e+ d+++  ++   ++i + ++s s++a
  CDO69303.1 197 QQAGKDAFGALSEKYPQLSEKLGGSYDELRRMAQKHGPEAKKLYDETTQQIKDIFSKGLSQESFDQAQqlIQSKTAEIRKIAQSSSQDA 285
                 556688999*************************************************9999999543212333334444444444444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.1
    Gp-FAR-1  35 gyknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvaktifnkyksl 118
                 g  +                                        ++++++k+++  +   a++k +l++l+ ++++ +++++++
  CDO69303.1 325 GSSS----------------------------------------AQEIFQKIKEAAESDGAKNKQKLKDLQDFVQKKAEEAQQQ 368
                 2333........................................4444455555555545555555555555555555554444 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5
    Gp-FAR-1  35 gyknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkv..aktifnkykslseeakaelekaFp 131
                 g  + +e+ + +K+  ++ ++k ++  + l++ v+k  +ea++ + + ++ g +  ++ +  +    + lk +  +k  ++  ++ se+ak+  e+++ 
  CDO69303.1 325 GSSSAQEIFQKIKEAAESDGAKNKQKLKDLQDFVQKKAEEAQQQASGQLERGWESLQDWVRTMPGGEEALKRLpdVKIFVKVSQERSEDAKKLAEETYE 423
                 567888999999999999999999999999999999999999888888865555555555555555555555422333344445555666666666666 PP

    Gp-FAR-1 132 eivkflenek 141
                  + ++le++ 
  CDO69303.1 424 AVLQVLEEKG 433
                 6666665542 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.5e-05     0.034       5     122 ..     134     246 ..     130     264 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
  HATPase_c_3   5 kAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAslslgkkltvitkkegess.tl 101
                  +A+++ vd   d++  +v+  v++   ++ ++ i+D+G+G++ ++ ++ + + +++ +   + + lG+   G k A+  l++k    + k g s+ +l
   CDO69303.1 134 DAVFDTVDQLRDSHGDEVNKIVSDGY-EEVRVIIKDNGSGVDMATAMKIFDVLRKRSS---QLQELGQQ-AG-KDAFGALSEKYPQLSEKLGGSYdEL 225
                  68888888888999888865555543.5799*************99999988887777...57788888.78.8888888888888887777666566 PP

  HATPase_c_3 102 tldvdkidkenekvleeltve 122
                  +   +k+  e +k ++e+t +
   CDO69303.1 226 RRMAQKHGPEAKKLYDETTQQ 246
                  666666666565555555544 PP

>> DUF5398  Family of unknown function (DUF5398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.3   1.5e-05     0.021      32      69 ..     235     272 ..     223     282 .. 0.81
   2 ?   -1.2   0.2       2.3   3.1e+03      23      26 ..     353     356 ..     328     384 .. 0.53
   3 ?   -2.9   0.7       7.8   1.1e+04      27      33 ..     433     439 ..     409     450 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
     DUF5398  32 eikqkvesriqkikeaLReGenkeefdkfgtlLhGYta 69 
                 e k+  ++  q+ik++  +G ++e+fd+ + l++  ta
  CDO69303.1 235 EAKKLYDETTQQIKDIFSKGLSQESFDQAQQLIQSKTA 272
                 5667778899*********************9988776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.3
     DUF5398  23 dlkd 26 
                 dl+d
  CDO69303.1 353 DLQD 356
                 2222 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.8
     DUF5398  27 vkkakei 33 
                  kkak++
  CDO69303.1 433 GKKAKQL 439
                 2333333 PP

>> MIEAP  Mitochondria-eating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.6   6.6e-05     0.091      22     133 ..     223     360 ..     206     367 .. 0.74
   2 ?    1.9   0.1      0.16   2.2e+02      42      94 ..     401     450 ..     375     452 .] 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
       MIEAP  22 eaLdaltelrr......ddelvqkilfilv....vlsfrvakealrslkervrkllstssadgsetke.............lssleeavsdylrkeadl 97 
                 ++L ++ + +        de+ q+i  i+     ++sf++a++ ++s+  ++rk+ ++ss+d+ +++               + l e+  + ++  a++
  CDO69303.1 223 DELRRMAQKHGpeakklYDETTQQIKDIFSkglsQESFDQAQQLIQSKTAEIRKIAQSSSQDAWNRAMkeaspyldklpeiKKFLAENQDKFIAAGAAT 321
                 44444444443444446677777777777766556***********************9998888655999*****99997677777777778777777 PP

       MIEAP  98 yd.vksiveevisellktlkekpslkqe...kelesYire 133
                  +  +s+++e+++++ k+  e++  k++   k+l++++++
  CDO69303.1 322 LSgGSSSAQEIFQKI-KEAAESDGAKNKqklKDLQDFVQK 360
                 775667777777776.777777777777688888889887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
       MIEAP  42 filvvlsfrvakealrslkervrkllstssadgsetkelssleeavsdylrke 94 
                 +i+v +s++ ++ a +  +e+   +l++ +++g++   +++l+e+v+d+ +ke
  CDO69303.1 401 KIFVKVSQERSEDAKKLAEETYEAVLQVLEEKGKK---AKQLTEEVKDDTKKE 450
                 45555666666666666666666677776666666...668999998888876 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.3   4.2e+02      56      83 ..      33      58 ..      16     102 .. 0.68
   2 ?    9.6   0.0   0.00091       1.3      23      67 ..     147     191 ..     129     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.3
                GTCSTTCHHCSTCHTSTSSSHHHHHHHH CS
   HATPase_c 56 klfekfsqddstkrggggtGlGlsivkk 83
                + f++f++  +t++++g++ +G+s v +
  CDO69303.1 33 RTFQRFQS--TTSDSSGQSAFGASHVAA 58
                55666666..677777777777777744 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00091
                 TTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCST CS
   HATPase_c  23 kageieveikase..ddlvisveDnGiGipkedlkklfekfsqddst 67 
                 +++e+   ++  +  +++++ ++DnG G++++   k+f+ + + +s+
  CDO69303.1 147 HGDEVNKIVS--DgyEEVRVIIKDNGSGVDMATAMKIFDVLRKRSSQ 191
                 4444443444..346799**************999999944441333 PP

>> Sep15_SelM  Sep15/SelM redox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02        28      11      29 ..     297     314 ..     295     317 .. 0.88
   2 ?   -0.7   0.0       1.2   1.6e+03      12      26 ..     349     363 ..     344     377 .. 0.77
   3 ?    5.4   0.2     0.015        20      11      54 ..     394     436 ..     391     443 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
                 -STTHHHHHHTTTHH.HHB CS
  Sep15_SelM  11 lnrlpevkaFvkedaaakf 29 
                 l +lpe+k+F+ e+  +kf
  CDO69303.1 297 LDKLPEIKKFLAENQ-DKF 314
                 679**********99.776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                 STTHHHHHHTTTHH. CS
  Sep15_SelM  12 nrlpevkaFvkedaa 26 
                 ++l+ ++ Fv+++a+
  CDO69303.1 349 QKLKDLQDFVQKKAE 363
                 789999****99993 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.015
                 -STTHHHHHHTTTHH.HHBTTEEEEEESS---EEEEE-SSS--- CS
  Sep15_SelM  11 lnrlpevkaFvkedaaakfpnlevkyvrgapPkLilldedgeev 54 
                 l+rlp vk Fvk    +  ++ +    ++    L++l+e+g++ 
  CDO69303.1 394 LKRLPDVKIFVKVSQ-ERSEDAKKLAEETYEAVLQVLEEKGKKA 436
                 99**********888.6666666666666666666666666655 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4       1.5   2.1e+03      33      77 ..       8      54 ..       3      69 .. 0.45
   2 ?   -2.4   0.0       5.6   7.8e+03      15      30 ..      98     113 ..      81     123 .. 0.45
   3 ?    3.9   0.1     0.058        80       9      70 ..     187     248 ..     180     254 .. 0.71
   4 ?    2.1   0.6      0.22     3e+02       6      59 ..     235     290 ..     230     300 .. 0.66
   5 ?   13.3   0.5   6.7e-05     0.093      10      66 ..     314     370 ..     305     388 .. 0.79
   6 ?    3.7   0.9      0.07        96      15      56 ..     408     449 ..     397     452 .] 0.67

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.5
      DUF883 33 Rerleerlerarerlrdaeea..vaerakeaaeaaddyVrenPwqav 77
                R   +++ ++ar++ + a+++   ++  ++   ++ d   ++   a 
  CDO69303.1  8 RTSSKATSTNARQSYALAARRvaGRRTFQRFQSTTSDSSGQSAFGAS 54
                44444444455544443333311333344444444444444444444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.6
      DUF883  15 eellkeaadeageeae 30 
                 + +l++a ++ +e ++
  CDO69303.1  98 ATILENAPRDPNEALN 113
                 2333344444444444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.058
      DUF883   9 slladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVr 70 
                 +  ++l+el ++a+++a   ++e   +l+e+l  + ++lr+++++   +ak+  +++ + ++
  CDO69303.1 187 KRSSQLQELGQQAGKDAFGALSEKYPQLSEKLGGSYDELRRMAQKHGPEAKKLYDETTQQIK 248
                 55677888888888888777777777777777777777777777777777777777766554 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.22
      DUF883   6 eleslladleellke..aadeageeaeelRerleerlerarerlrdaeeavaerak 59 
                 e ++l +++ + +k+  ++  ++e+ +++ + ++++ ++ r+ ++  ++++ +ra 
  CDO69303.1 235 EAKKLYDETTQQIKDifSKGLSQESFDQAQQLIQSKTAEIRKIAQSSSQDAWNRAM 290
                 55666666655555522355688889999999999999999888877777655543 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 6.7e-05
      DUF883  10 lladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaad 66 
                  +a  ++ l+  +++a+e  ++++e +e+  ++ +++l+d+++ v+++a+ea ++a 
  CDO69303.1 314 FIAAGAATLSGGSSSAQEIFQKIKEAAESDGAKNKQKLKDLQDFVQKKAEEAQQQAS 370
                 566667777788888888888999999999999999999999999999988888775 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.07
      DUF883  15 eellkeaadeageeaeelRerleerlerarerlrdaeeavae 56 
                 +e  ++a++ a+e++e++ + lee+ ++a++ +++++++ ++
  CDO69303.1 408 QERSEDAKKLAEETYEAVLQVLEEKGKKAKQLTEEVKDDTKK 449
                 455567777777777777777777777777777777776655 PP

>> QIL1  MICOS complex subunit MIC13, QIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.2   1.6e+03      10      28 ..      86     104 ..      84     118 .. 0.80
   2 ?    8.8   0.0    0.0018       2.5      14      72 ..     237     302 ..     232     305 .. 0.71
   3 ?   -1.2   0.2       2.4   3.2e+03      29      29 ..     363     363 ..     324     427 .. 0.61
   4 ?   -1.8   0.1       3.6     5e+03      10      33 ..     411     434 ..     407     450 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
        QIL1  10 seeteelykkakeyipPyv 28 
                 s++ ++ y+k k++i + +
  CDO69303.1  86 SKTASDYYEKTKATILENA 104
                 6788999******998655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0018
        QIL1  14 eelykkakeyip.........Pyvdevkkklclevpklpsveevkf.slveyWNkgVkkvfsflselPt 72 
                 ++ly +  ++i+         + +d++++ +   + k    +++ + s +++WN+++k++   l +lP+
  CDO69303.1 237 KKLYDETTQQIKdifskglsqESFDQAQQLI---QSKTAEIRKIAQsSSQDAWNRAMKEASPYLDKLPE 302
                 5677777777774444444444444433333...67778888999989***********9999999997 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.4
        QIL1  29 d 29 
                 +
  CDO69303.1 363 E 363
                 2 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.6
        QIL1  10 seeteelykkakeyipPyvdevkk 33 
                 se+ ++l ++ +e++  +++e  k
  CDO69303.1 411 SEDAKKLAEETYEAVLQVLEEKGK 434
                 667777777777777766665222 PP

>> Fox-1_C  Calcitonin gene-related peptide regulator C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.6    0.0019       2.6      10      88 ..      16      97 ..       7     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
     Fox-1_C 10 aaaavayrGahlrGrGravynavraavppp.aipaygavvyqdglygae..iygGyaayryaqpaaaaaaaaaysdsygrvy 88
                ++a  +y  a+ r  Gr  ++ ++++++++    a+ga     g+ g    + gGya y ++    a  a+++ sd y +  
  CDO69303.1 16 TNARQSYALAARRVAGRRTFQRFQSTTSDSsGQSAFGASHVAAGVAGGAivLVGGYAWYHFSGLKKAVDASKTASDYYEKTK 97
                45667899999999*********998876515789**********99885678**********9999999*******99865 PP

>> Cbl_N  CBL proto-oncogene N-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.28   3.9e+02      11      59 ..     190     239 ..     179     284 .. 0.56
   2 ?    0.6   0.1       0.4   5.5e+02      59     102 ..     309     352 ..     264     357 .. 0.62
   3 ?    6.7   0.6    0.0051       7.1      44      95 ..     402     452 .]     394     452 .] 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.28
                 HHHHHHHHHTT-SSS.---SSSS-HHHHHHHHHHHHHHHHHHS..-HHHH CS
       Cbl_N  11 klldkleklcqdprl.nLknspPylldllpdtaqlLrevaekrrekeeal 59 
                   l+ l +++ +  +  L++  P l + l   ++ Lr++a+k+  ++++l
  CDO69303.1 190 SQLQELGQQAGKDAFgALSEKYPQLSEKLGGSYDELRRMAQKHGPEAKKL 239
                 45555555544444425777778888888888888888888765544442 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.4
                 HTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHHT-TTSHHHHHHH CS
       Cbl_N  59 lseaeylriflanllkkskqvakLfkeakeklfeeeselRrqLt 102
                  ++ ++++   a+l   s+++ ++f++ ke   +++++ +++L 
  CDO69303.1 309 ENQDKFIAAGAATLSGGSSSAQEIFQKIKEAAESDGAKNKQKLK 352
                 34555666666666666666667777777777777766666665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0051
                 HHHHHHHHS..-HHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHHT-TTS CS
       Cbl_N  44 lLrevaekrrekeealseaeylriflanllkkskqvakLfkeakeklfeees 95 
                  + +v ++r+e++++l e +y + +l+ l++k k++ +L +e k++  +e+s
  CDO69303.1 402 IFVKVSQERSEDAKKLAEETY-EAVLQVLEEKGKKAKQLTEEVKDDTKKESS 452
                 566899999999999999999.5669*******************9999876 PP

>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00043      0.59      17      76 ..     262     321 ..     241     331 .. 0.79
   2 ?   -1.5   0.1       2.2   3.1e+03      17      45 ..     341     358 ..     327     369 .. 0.48
   3 ?   -2.8   0.3       5.8     8e+03      39      39 ..     427     427 ..     399     450 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
  Syntaxin-18_N  17 sssskseekeakkrkkkrlkkskekdeFikeAkeilkhItkLrkfLleirkaYlnvrshl 76 
                    ++++  ++k+a+ rk  +++++ + +  +keA   l ++ + +kfL+e++++++ +  ++
     CDO69303.1 262 QAQQLIQSKTAEIRKIAQSSSQDAWNRAMKEASPYLDKLPEIKKFLAENQDKFIAAGAAT 321
                    5667778888888888888888888899*************************9995544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
  Syntaxin-18_N  17 sssskseekeakkrkkkrlkkskekdeFi 45 
                    +s+            +k+++k k  ++F+
     CDO69303.1 341 ESD-----------GAKNKQKLKDLQDFV 358
                    233...........333333333333443 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.8
  Syntaxin-18_N  39 k 39 
                    +
     CDO69303.1 427 Q 427
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2090  (0.116571); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 2965.89
//
Query:       CDO69304.1  [L=329]
Description: hypothetical protein BN946_scf184976.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.5    7.6   8.6        2.3    8.8   0.3    4.0  5  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.18   3.2e+03      22      32 ..      51      61 ..      42      66 .. 0.66
   2 ?    8.8   0.3   0.00013       2.3       1      30 [.      79     112 ..      79     116 .. 0.88
   3 ?   -3.9   0.0         1   1.8e+04      25      30 ..     139     144 ..     137     148 .. 0.57
   4 ?   -0.6   0.0      0.11     2e+03      24      33 ..     191     200 ..     188     203 .. 0.63
   5 ?    0.2   0.0     0.065   1.2e+03      16      30 ..     212     225 ..     210     231 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.18
                -TT--EEE-.- CS
       LRR_4 22 lpnLkeLdLsg 32
                 p L++L L +
  CDO69304.1 51 VPRLHSLRLAD 61
                67888888844 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00013
                 SS--EEE--SS---E-S-HH....H-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNqltdiplle....klpnLkeLdL 30 
                 +n ++L+L+ ++l+  + le    ++p L +L+L
  CDO69304.1  79 KNITELHLHRCHLQASSHLEqlvfQFPRLNTLTL 112
                 699***********98887778888*******99 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1
                 --EEE- CS
       LRR_4  25 LkeLdL 30 
                 L++L +
  CDO69304.1 139 LQSLRI 144
                 666665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.11
                 T--EEE-.-S CS
       LRR_4  24 nLkeLdLsgN 33 
                 +L++L+L  N
  CDO69304.1 191 SLESLTLGYN 200
                 5666666334 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.065
                 -S-HHH-TT--EEE- CS
       LRR_4  16 iplleklpnLkeLdL 30 
                 i+l++  ++L++L+L
  CDO69304.1 212 IDLFR-HKKLRSLSL 225
                 55666.567777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2293.92
//
Query:       CDO69305.1  [L=432]
Description: hypothetical protein BN946_scf184976.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.3   0.0        4.7    7.5   0.0    2.8  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00026       4.7      21      51 ..      72     101 ..      48     111 .. 0.82
   2 ?    4.6   0.0    0.0021        37      54     109 ..     279     353 ..     264     355 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00026
                 EEEEE-HHHHHHH-HHHHHHHTSTTTTTCCC CS
         BTB  21 kefkahkavLaarSpyFkalftskeieessv 51 
                 + + a++a L+  S+ F++l++ + ++es+ 
  CDO69305.1  72 RALFANRALLCKTSSHFDNLLSAG-FAESEL 101
                 6789******************99.787764 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0021
                 EEETTSGHHHHHHHHHHHHHSEEEC-...................CGGGHHHHHHHHHHHT-HHHHHHHHHHHHH CS
         BTB  54 ielddvepeafealLefiYtgeleit...................seenleelLaaadllqiprlkkaceeflkq 109
                 + ++d+ +++ +a+L ++Y ++l++                       + +++ ++a++++ip+lk+++ + +++
  CDO69305.1 279 VFIEDFAYRTWAAFLFYAYFDKLSFAplrsceraaqhsapkpydaPLCSPKSMYRLAEKYDIPSLKNEAFYAIQS 353
                 456777788888888888888888777777777777777777666556678889999999999999988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3295.67
//
Query:       CDO69306.1  [L=92]
Description: hypothetical protein BN946_scf184976.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 735.64
//
Query:       CDO69307.1  [L=361]
Description: hypothetical protein BN946_scf184976.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.1    9.5   8.4      0.043   14.0   2.5    1.8  2  CAF1A     Chromatin assembly factor 1 subunit A


Domain annotation for each model (and alignments):
>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.5   2.4e-06     0.043      27      64 ..      94     129 ..      73     140 .. 0.73
   2 ?   -3.7   0.4      0.78   1.4e+04      54      63 ..     151     160 ..     144     165 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-06
       CAF1A  27 rnPfskdekeldYdyDSdaEWeeeeeeegedleseede 64 
                   P s+ +++ dYdy Sd + ++  e+e ed++  + +
  CDO69307.1  94 PYPSSRPKNSADYDYGSDSDLDD--ESENEDIDATDIQ 129
                 34568888999*********966..4589999977654 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.78
       CAF1A  54 egedleseed 63 
                 + +dle +++
  CDO69307.1 151 KQDDLEGQDN 160
                 3344443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2351.26
//
Query:       CDO69308.1  [L=298]
Description: hypothetical protein BN946_scf184976.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2103.49
//
Query:       CDO69309.1  [L=913]
Description: hypothetical protein BN946_scf184976.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-06   27.8   0.1    7.6e-05   23.2   0.1    2.4  1  AAA       ATPase family associated with various cellular acti
     0.0029   17.6   0.2      0.073   13.0   0.0    2.7  3  Rad17     Rad17 P-loop domain
     0.0032   17.9   0.0      0.013   15.8   0.0    2.0  2  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.3e-08   7.6e-05       1     112 [.     448     598 ..     448     606 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.3e-08
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.............................................STTHHHHHHHHHHHH.H CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.............................................yvgesekkirelfke.a 53 
                 +ll Gp G+GKT+++ a a+elg +++e+    + +                                              +v++ e++ + + ++ a
  CDO69309.1 448 ILLNGPHGCGKTAAVYACAEELGWDVFEVYP-GIGERsggalnklvgevgknhlvrqtqqqqpkgprtekpvwpkanffakrVVSDDEDEYESTQDApA 545
                 69********************988666532.2221123445556777777777777888888888888888888888888866666666666655432 PP

                 .HHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  54 .keka.......kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrp 112
                  +e         ++si++i+E+d l+k++        ++  ++L + +++ ++      v++++n++
  CDO69309.1 546 gQE-PsraptsiSQSIILIEEVDVLFKDD--------SNFWSTLTKIIKECRR-----PVVLTCNDM 598
                 222.1466677777999999999999999........6677777777777766.....466677766 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.21   1.3e+03       8      38 ..     274     304 ..     269     311 .. 0.77
   2 !   13.0   0.0   1.2e-05     0.073      47      78 ..     447     478 ..     437     490 .. 0.86
   3 ?    0.5   0.1     0.085   5.1e+02     133     163 ..     558     587 ..     552     601 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
       Rad17   8 lWfekykPekaeelavhkkkieevkewlkad 38 
                 lW +k++P  aee+    +    +++wl a 
  CDO69309.1 274 LWNDKWRPRRAEEVLGNEQAALYLRDWLLAL 304
                 7***********9977777666777777665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.2e-05
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewln 78 
                  +L+ GP GCgk+ +v   + elg ++ e   
  CDO69309.1 447 TILLNGPHGCGKTAAVYACAEELGWDVFEVYP 478
                 5799********************99988665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.085
       Rad17 133 kklilvedlPnkfyrdsdalrevirkylrss 163
                 +++il+e++   f+ ds+ +   + k ++  
  CDO69309.1 558 QSIILIEEVDVLFKDDSNFWS-TLTKIIKEC 587
                 79*******999998885444.444444433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06     0.013      24     152 ..     443     606 ..     435     613 .. 0.64
   2 ?   -3.2   0.0       1.6   9.3e+03     106     131 ..     684     714 ..     653     715 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-06
      AAA_16  24 p..elvllsGesGvGKsslvrellralekd........................ggiflrgkcdql....esaipysalaqalareellrqllde.aes 91 
                 +  + +ll G+ G+GK++ v +++++l  d                        + +++r++ +q     +++ p  + a+ +a+ +++ + +de +++
  CDO69309.1 443 TvyNTILLNGPHGCGKTAAVYACAEELGWDvfevypgigersggalnklvgevgKNHLVRQTQQQQpkgpRTEKPVWPKANFFAK-RVVSDDEDEyEST 540
                 456899*******************999997777777777777777777666643555666666663333333666666666655.4444444441333 PP

      AAA_16  92 aeleawrekleealaavpelagaea..............srllellkrllallsrderplvlvlDdlqwadeasl 152
                 ++++a +e  ++ +++++      +              s ++ +l+++++ ++r   p+vl++ d+  +  ++l
  CDO69309.1 541 QDAPAGQEPSRAPTSISQ------SiilieevdvlfkddSNFWSTLTKIIKECRR---PVVLTCNDMTLVPLEDL 606
                 333333333333222222......13344447777778899*********87777...9***9999977665555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
      AAA_16 106 a.....avpelagaeasrllellkrllalls 131
                 +     ++++++g +asr  + l +l++ ++
  CDO69309.1 684 GevsiePSKSITGTSASRGDQSLEALIRVAK 714
                 1333448888899999999999999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 5797.69
//
Query:       CDO69310.1  [L=551]
Description: hypothetical protein BN946_scf184976.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00011   22.7   0.1    0.00018   22.1   0.1    1.3  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1     1e-08   0.00018      53     202 ..      41     211 ..      28     213 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1e-08
                  HHHHHHHHHHH.....TSEEEEEC-TTS.CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHH CS
  Metallophos  53 llellaalvky.....pipvylllGNHe.gfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleap 144
                  ++++l+++        ++  y ++GN + g+ +e +          +  +++++ f+ l+  +   +++ vll+ +g  e+ + l  ++ +++e   p
   CDO69310.1  41 YERNLRKFKTIfhldpGVTSYYVPGNNDlGLNIEPSAA-------RQARNRFTTHFGPLNQKVVLRNHTLVLLDAAGLVEE-DYLRAAKYIDYEHWKP 130
                  45554444444565666777********5444433333.......334455589999999999777774555555553333.3444444445444444 PP

                  HCC..HHHHHHHHHHTTCSEEEEEESSESS.....................CSSSCSCCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 145 epg..dewlkdlekrekadwvivlgHsply.....................rgsgylfgdealedllkkygvdlvisGHtH 202
                   p+   e+ + l+++ +a ++i+++H+pl+                      g++++ g + ++ ll + ++ +v+s+++ 
   CDO69310.1 131 LPRgtVEFVHSLRDEVQAHPTILFTHIPLHrpdtapcgplrekgtirrgvgHGYQNTLGKKTTAFLLHNLRPRMVFSADDK 211
                  44455777777999********************************99999999999999999988**********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3795.55
//
Query:       CDO69311.1  [L=267]
Description: hypothetical protein BN946_scf184976.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.031   14.5   0.4       0.16   12.2   0.0    2.0  2  DUF2407_C     DUF2407 C-terminal domain
      0.064   13.7   0.0        0.1   13.0   0.0    1.3  1  Cid2          Caffeine-induced death protein 2
       0.13   11.0   3.3         14    4.3   0.0    2.1  2  DUF2207       Predicted membrane protein (DUF2207)
       0.24    9.9   9.0        1.5    7.3   0.5    2.3  2  MFS_2         MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.5e-05      0.16      36     131 ..      59     163 ..      44     169 .. 0.63
   2 ?   -0.2   0.1      0.23     1e+03     105     137 ..     215     248 ..     199     251 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
   DUF2407_C  36 mpsdleeeeeeelreLEerWidstanaeeaae..aeeegeaakeee........nsvdseeskanedlliGlliGfflglfalllllkeegllnkrqkm 124
                 + +  e+e ++++reL  +W+d  +  +  ++  a +++++   ++           d  ++ a++  l+  +   +l ++a+++l++ +  + kr+  
  CDO69311.1  59 QDETDEKECRKAMRELVQSWMDRLQLISVITTffA-AMEAQLLGSTipddpmkdPPADQVANAALTGALVVHVFAAILSFLAAFFLIRYKLTVAKREER 156
                 11121334449************995444444422.222222222256677766334555666666666667777888889999*****9999999999 PP

   DUF2407_C 125 aviaGvl 131
                  v  G++
  CDO69311.1 157 KVESGLA 163
                 9988875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.23
   DUF2407_C 105 lfalllllkeeglln.krqkmaviaGvlvnlvlg 137
                 l a+ ++l+  g+l     ++a+  Gv+ ++ ++
  CDO69311.1 215 LAAVGFVLALVGVLAfAWARLALSSGVFASICVA 248
                 3444444444444431233566666666666655 PP

>> Cid2  Caffeine-induced death protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.3e-05       0.1      38      76 ..      52      89 ..      42     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
        Cid2 38 fdpsstalaipkesaCaefleevLfpsWqaRedvieyCa 76
                ++ +++ +   +e++C++ ++e L++sW  R ++i+  +
  CDO69311.1 52 RKWTQEDQDETDEKECRKAMRE-LVQSWMDRLQLISVIT 89
                33333333445677******99.***********98755 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0031        14     200     439 ..     116     150 ..      41     184 .. 0.58
   2 ?    4.1   4.1    0.0035        16     377     434 ..     209     265 ..     202     267 .] 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0031
     DUF2207 200 raarlslallillilllilllllllllliklllwkkygrepkvkevdpeYerdvPedlsPavvgylvkgdkvdengltAtlldLavkgyitieeekkkk 298
                 + a+ +l+ ++++ +++ +l +l+ ++li++ l                                                                  
  CDO69311.1 116 QVANAALTGALVVHVFAAILSFLAAFFLIRYKL------------------------------------------------------------------ 148
                 222223333333333333333333333333222.................................................................. PP

     DUF2207 299 kkgkdtltilkkndeeldpyEkalldlLfdkseegkslkeikkyakkskkkakkfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglil 397
                                                                                                                    
  CDO69311.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

     DUF2207 398 illallllvlllvfllilllillliaiivlllfsrllgrrte 439
                                                         t 
  CDO69311.1 149 ----------------------------------------TV 150
                 ........................................22 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0035
     DUF2207 377 kkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrll 434
                  +  ++l a+g++l+++g++++ +a l+l +  vf++i + ++l+ ++++++++++++
  CDO69311.1 209 HSLCMWLAAVGFVLALVGVLAFAWARLALSS-GVFASICVAVCLVSGVGAVFWPASTM 265
                 5667899999999999999999999999998.99999999999999999999998776 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.5   0.00034       1.5     387     426 ..     110     149 ..      83     150 .. 0.82
   2 ?    6.5   2.4   0.00056       2.5     259     315 ..     210     265 ..     202     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00034
       MFS_2 387 rakasvqspqvvlalrllyavlpavlllvallllvrypln 426
                 ++++++q + + l+ +l++ v+ a+l+++a+++l+ry+l+
  CDO69311.1 110 KDPPADQVANAALTGALVVHVFAAILSFLAAFFLIRYKLT 149
                 67788888888888899999******************97 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00056
       MFS_2 259 saasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnll 315
                 s  +++++v +++al+g++ ++++   l+    + ++ ++++v +v++++  p++++
  CDO69311.1 210 SLCMWLAAVGFVLALVGVLAFAWARLALSSGVFASICVAVCLVSGVGAVFW-PASTM 265
                 5678999999****************************************9.77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      872  (0.0486363); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 1945.87
//
Query:       CDO69312.1  [L=437]
Description: hypothetical protein BN946_scf184976.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-45  153.8   0.0      3e-45  153.2   0.0    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    4.6e-37  127.6   0.0    6.4e-37  127.2   0.0    1.2  1  GATase           Glutamine amidotransferase class-I
    6.2e-08   32.7   0.1    2.1e-06   27.6   0.1    2.5  1  Peptidase_C26    Peptidase C26
     0.0068   16.2   0.0      0.011   15.6   0.0    1.3  1  DJ-1_PfpI        DJ-1/PfpI family
  ------ inclusion threshold ------
      0.068   13.4   0.0       0.12   12.5   0.0    1.4  1  bMG10            Bacterial Alpha-2-macroglobulin MG10 domain


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   8.2e-49     3e-45       2     127 ..      29     166 ..      28     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 8.2e-49
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGv.......needves.........ekikvaglvv 78 
                      avL+L+ G+ f G+sfg  k+  GE vf+T++t+Y+e++tDpsY+gqilv+t+pliGnyGv       +     +         e+i+++++vv
       CDO69312.1  29 AVLHLKTGQSFAGRSFGaPKSIWGETVFSTSITSYTESMTDPSYRGQILVFTTPLIGNYGVphnktpvD-----DkdvgvvlesERIQCSAVVV 117
                      79***************55999***************************************76433331.....36677777779********* PP

  CPSase_sm_chain  79 relseepsnwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgv 127
                      ++++e+ s+++a esLs+w++++++pgi+gvDTRa+t+ lr++g+++g+
       CDO69312.1 118 ADVAEKFSHYTAVESLSSWCARNGVPGITGVDTRAITRLLRDQGTTLGR 166
                      *********************************************9997 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   1.8e-40   6.4e-37       2     188 ..     213     398 ..     212     400 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.8e-40
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT..TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg..vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 ++D++   + n++++lv++g+ v+v+p++ ++++i+   +++dg+++s+Gpg+p+  +  ++++ + + e ++Pi+GIC+G+Q+++ + g + ++++ +
  CDO69312.1 213 VLDFG--AKANILRSLVRRGAAVTVLPWNFDFNKIR---DQYDGLFLSNGPGDPNhcMPAALNLRRTLQEWDKPIFGICMGHQVIGMAAGLEAYRMT-F 305
                 78999..9***************************5...79***************88999999999999***************************.* PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETT..T.EEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekkn..p.fvgvQFHPEststpegpellfnfli 188
                 +++g+++++ +  ++   + ++++ ++++H+y+++ ++  pag+e  + + +d+++++i    +  + ++gvQFHPEs  +p ++  +f+ ++
  CDO69312.1 306 GNRGHNQPVLALASSGSIKAGRVYVTSQNHQYALKLQDPFPAGWEPFFINCNDSSVEGIKSTADsgKkVWGVQFHPESAGGPLDTIEMFTDFL 398
                 ***********9998889999***************9**********************998888877***************9987777765 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1     6e-10   2.1e-06      95     216 .]     269     382 ..     218     382 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 6e-10
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnsl.Hhqaike...laeelr 186
                    l L r   e+++Pi+giC G+q++ +a G + y+      g+  h ++        + + +++ ++      ++ v+s  H+ a+k       +++
     CDO69312.1 269 LNLRRTLQEWDKPIFGICMGHQVIGMAAGLEAYRMTF---GNRGHNQPV-------LALASSGSIKA----GRVYVTSQnHQYALKLqdpFPAGWE 350
                    6778888999**************9999988777666...344442222.......33333333322....3344555416666655445567888 PP

  Peptidase_C26 187 veAvae.DgviEaieseeak.afvlgvQwHPE 216
                       +   D  +E i+s++++ + v+gvQ+HPE
     CDO69312.1 351 PFFINCnDSSVEGIKSTADSgKKVWGVQFHPE 382
                    7665544********9998889*********9 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-06     0.011      58     119 ..     246     304 ..     200     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-06
                 TCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE- CS
   DJ-1_PfpI  58 kaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgrrvT 119
                 + ++yD l l  G   p++    +++++l ++  e +k+++ IC+g q+   a  l+  r+T
  CDO69312.1 246 R-DQYDGLFLSNGPGDPNHCM--PAALNLRRTLQEWDKPIFGICMGHQVIGMAAGLEAYRMT 304
                 4.46*********99777766..69***********************************99 PP

>> bMG10  Bacterial Alpha-2-macroglobulin MG10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05      0.12      22      60 ..     317     355 ..     297     396 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
       bMG10  22 klkvGdkvrvrltvttprdleyvaledplPAGlepvnps 60 
                  +++G+    r+ vt+++  +   l+dp+PAG+ep   +
  CDO69312.1 317 LASSGSIKAGRVYVTSQNHQYALKLQDPFPAGWEPFFIN 355
                 5788999999************************96555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3144.35
//
Query:       CDO69313.1  [L=498]
Description: hypothetical protein BN946_scf184976.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-10   38.4   0.3    3.6e-09   36.5   0.1    2.1  2  BSD             BSD domain
  ------ inclusion threshold ------
      0.018   15.6   5.7          3    8.5   0.0    3.7  4  DUF883          Bacterial protein of unknown function (DUF883
      0.097   13.0   5.5      0.061   13.6   2.1    2.2  3  DUF2267         Uncharacterized conserved protein (DUF2267)
       0.12   12.6   0.2       0.93    9.7   0.0    2.5  3  Apo-CII         Apolipoprotein C-II
       0.43   10.4   9.8       0.53   10.1   8.0    2.2  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
        7.4    7.0  13.6        8.1    6.9  10.0    2.8  2  V-ATPase_G_2    Vacuolar (H+)-ATPase G subunit


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   6.7e+03      11      34 ..      56      79 ..      49      81 .. 0.75
   2 !   36.5   0.1   1.2e-12   3.6e-09      23      57 ..     340     374 ..     322     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
         BSD 11 eeiaqsllkedpeLrklynelVPs 34
                +++ q + +   eL k+  e+ Ps
  CDO69313.1 56 KDLGQVVQQAQRELTKITSEALPS 79
                566677777788899999999887 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 1.2e-12
         BSD  23 eLrklynelVPskvseeqFWsrYfyllrahaieee 57 
                 +L+++++ lVP+ ++e +FW rYf+++++ + ee+
  CDO69313.1 340 ALKATMDTLVPEFMTEDEFWARYFFRVYQVEREEA 374
                 69****************************99997 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00099         3       3      54 ..      25      76 ..      23      84 .. 0.89
   2 ?   -2.8   0.3       3.3   9.8e+03      20      30 ..     111     121 ..      95     131 .. 0.43
   3 ?    6.7   0.1    0.0036        11       8      70 ..     145     207 ..     137     212 .. 0.80
   4 ?    0.7   0.0      0.27   8.2e+02      26      48 ..     266     288 ..     256     309 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00099
      DUF883  3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeav 54
                l++e+ +++ +l  +     ++++  +e++R+ l + +++a+ +l++ + ++
  CDO69313.1 25 LNEEVSQVVGQLSRFWGGFRKQSQTALEAARKDLGQVVQQAQRELTKITSEA 76
                6789999999999999999************************999887665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
      DUF883  20 eaadeageeae 30 
                 ea++ea+ +a+
  CDO69313.1 111 EAESEAKASAD 121
                 22222333333 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0036
      DUF883   8 eslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVr 70 
                 esl ++l++    +a+ ++ + ++lR+ ++ +l+r++ ++++  ++ ++  +ea e  +d+V+
  CDO69313.1 145 ESLKETLKHARVGSASMSALDFAQLRSTITTELHRMQGATEEYVHRSEDFLREAGEFLKDAVK 207
                 556666666666677888889999*************99999999999999999998888887 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.27
      DUF883  26 geeaeelRerleerlerarerlr 48 
                  ++++++  r+e++l+++r+  +
  CDO69313.1 266 IDTLRAVATRAESMLKQLRHDPE 288
                 33444444688899999988654 PP

>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.1     2e-05     0.061      48     121 ..      66     149 ..      42     150 .. 0.72
   2 ?   13.4   1.4   2.3e-05     0.069      10      87 ..     106     183 ..      97     209 .. 0.74
   3 ?   -2.9   0.0       2.7   8.1e+03      98     105 ..     331     338 ..     297     362 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                 -HHHHHHHHTT--TTS.........-----SHHHHHHHHHHTS.....E.HHHHHHHHHHHHHHHS-HHHHHHHHHTS-HHHHT CS
     DUF2267  48 Peelrgllrdgwppve.........pgkrfdreeflervaeelgvdped.aeqaaraVfaalkealsegeiedvaaqLPkdlre 121
                 + el ++  ++ p ++         p+++ +++e  + +  e+++++e+ a+  a + f+ l++al++  +  v+ qLP++l+e
  CDO69313.1  66 QRELTKITSEALPSTSaptlaspaaPEPNASATEQAASIPAEAEAEAESeAKASADTLFSRLQAALPPNLVSTVQTQLPESLKE 149
                 444444444444443344445555466688899999999999977776679*****************************9986 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.3e-05
                 HHHT---HHHHHHHHHHHHHHHHTTS-HHHHHHHHTTS-HHHHHHHHTT--TTS-----SHHHHHHHHHHTS.....E CS
     DUF2267  10 erlgledreeAeratravLrtLrdrlteeeaadlaaqLPeelrgllrdgwppvepgkrfdreeflervaeelgvdped 87 
                 ++++ e ++eA+  + + +  L+  l+++    +  qLPe l+++l+ +   ++    +d  ++   + +el+ ++ +
  CDO69313.1 106 AEAEAEAESEAKASADTLFSRLQAALPPNLVSTVQTQLPESLKETLKHARVGSASMSALDFAQLRSTITTELHRMQGA 183
                 567778888999999999999999999999999999999999999988887666444566666666666666544444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.7
                 HHHHHS-H CS
     DUF2267  98 alkealse 105
                 al++ +++
  CDO69313.1 331 ALADPVDG 338
                 22222222 PP

>> Apo-CII  Apolipoprotein C-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.92   2.8e+03      14      33 ..      29      48 ..      15      64 .. 0.75
   2 ?   -3.0   0.0       2.9   8.7e+03      28      38 ..     116     126 ..     113     132 .. 0.49
   3 ?    9.7   0.0   0.00031      0.93      42      56 ..     294     308 ..     289     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.92
     Apo-CII 14 ltkvqesllsYWdsAkaaAq 33
                +++v   l+++W+  ++  q
  CDO69313.1 29 VSQVVGQLSRFWGGFRKQSQ 48
                67888999999987766655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
     Apo-CII  28 AkaaAqdLYkk 38 
                 Aka+A+ L+ +
  CDO69313.1 116 AKASADTLFSR 126
                 45555544433 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00031
     Apo-CII  42 ptvdekirdmYskst 56 
                 ptvdek+r+mY+   
  CDO69313.1 294 PTVDEKVREMYTSWV 308
                 8**********9644 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   8.0   0.00018      0.53      23     183 ..      17     193 ..      12     207 .. 0.66
   2 ?   -3.0   0.0       1.9   5.7e+03     148     160 ..     272     284 ..     264     303 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH..............HHHHCHHCCHHCHCCHCHH CS
  Apolipoprotein  23 laqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelre..............rlaadaeelqeqlavyaee 103
                     +++e+ + l++e  ++  +l++ +   r++ ++ ++++++ lgq +++ +++l+ +t+e                                   +
      CDO69313.1  17 ANAEASPSLNEEVSQVVGQLSRFWGGFRKQSQTALEAARKDLGQVVQQAQRELTKITSEALPstsaptlaspaapeP-----------------N 94 
                     55667777777777777777777777777777777777777777777777777777777766566665555554441.................0 PP

                     .................HHHHHHHHHHHHHHHHC.HHHHHHHHHHHHHH.HHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXX CS
  Apolipoprotein 104 .................lrerlerhvealkarla.pyveelrqklaerl.eelkeslaphaeeveerlssrveelrekleeqaeelrerleanle 179
                                      +++++++++++l +rl+ ++  +l++ ++ +l e lke+l+ +   + ++ +    +lr + ++++  ++   e++++
      CDO69313.1  95 asateqaasipaeaeaeAESEAKASADTLFSRLQaALPPNLVSTVQTQLpESLKETLKHARVGSASMSALDFAQLRSTITTELHRMQGATEEYVH 189
                     33334444444333333666666666666666653333455566666664678888888888888888999999999999999999999888888 PP

                     XXXX CS
  Apolipoprotein 180 elka 183
                     + ++
      CDO69313.1 190 RSED 193
                     7765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
                     ----SSSHHHHHH CS
  Apolipoprotein 148 veerlssrveelr 160
                     v +r++s +++lr
      CDO69313.1 272 VATRAESMLKQLR 284
                     2222222222222 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.0    0.0027       8.1      19      94 ..      49     130 ..      44     137 .. 0.81
   2 ?   -0.6   0.1      0.59   1.8e+03      70      95 ..     306     332 ..     270     339 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH CS
  V-ATPase_G_2  19 qrlEaArkeaereveaAeaeAarilreA..eakakalqa....eyeqelaeevarireeararaeaeaqavrkraearlqqA 94 
                     lEaArk+  + v++A+ e  +i +eA   ++a  l++    e ++  +e+ a i +ea+a+ae+ea+a       rlq A
    CDO69313.1  49 TALEAARKDLGQVVQQAQRELTKITSEAlpSTSAPTLASpaapEPNASATEQAASIPAEAEAEAESEAKASADTLFSRLQAA 130
                   569************************94445566676522225667788999999999********999999999999887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.59
                   HHHHHHHHHHHHHHHHHH.HCSHHHHH CS
  V-ATPase_G_2  70 eeararaeaeaqavrkra.earlqqAv 95 
                     ++++a++e++ + + a ++r+q+A 
    CDO69313.1 306 SWVATEASSEVHGLGTTAwQKRIQEAL 332
                   345677888888775544267788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1086  (0.0605723); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3228.97
//
Query:       CDO69314.1  [L=475]
Description: hypothetical protein BN946_scf184976.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3634.90
//
Query:       CDO69315.1  [L=1022]
Description: hypothetical protein BN946_scf184976.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-36  125.3   0.0    2.1e-36  124.4   0.0    1.5  1  RT_RNaseH       RNase H-like domain found in reverse transcri
    7.5e-32  110.6   0.0    1.2e-31  110.0   0.0    1.3  1  RVT_1           Reverse transcriptase (RNA-dependent DNA poly
    2.4e-31  107.7   0.0    5.8e-31  106.5   0.0    1.6  1  RT_RNaseH_2     RNase H-like domain found in reverse transcri
    2.1e-16   59.7   0.2    5.8e-16   58.4   0.2    1.8  1  Integrase_H2C2  Integrase zinc binding domain
    2.3e-15   56.8   0.0    1.4e-14   54.3   0.0    2.2  2  rve             Integrase core domain
    8.4e-06   25.9   0.1    1.9e-05   24.8   0.1    1.6  1  zf-H2C2         H2C2 zinc finger
     0.0012   18.7   0.1     0.0027   17.6   0.1    1.7  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   8.3e-40   2.1e-36       2     105 .]     351     456 ..     350     456 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 8.3e-40
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHH CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarW 98 
                 p++++++etDAsd++i+++Ls ++e+ge +p+af Sr+lsgae ny+t++k llAi +++k++rhyl+g    + v+tDhknl+y+ ++k l++r+arW
  CDO69315.1 351 PDRQITVETDASDYAIAGILSITTESGELHPVAFHSRTLSGAELNYDTHDKDLLAIFECFKTWRHYLEGsGTpIDVVTDHKNLEYFSTTKLLTRRQARW 449
                 8999*****************************************************************7446************************** PP

                 HHHC-XX CS
   RT_RNaseH  99 aleLsey 105
                 +++Ls++
  CDO69315.1 450 SEFLSQF 456
                 *****98 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   4.6e-35   1.2e-31       1     222 []     102     262 ..     102     262 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 4.6e-35
                 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS
       RVT_1   1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 
                 ++Kk+ gs R+ +     dy+ lnk++ k         + +++p   +              l+  +ka++++k+Dl+ a++ v+ +  ++ +taf+++
  CDO69315.1 102 VKKKD-GSLRLcV-----DYRGLNKITRK---------DRYPLPLVSDL-------------LDTPRKARIYTKIDLRHAYNLVRIAPGDEWKTAFRTR 172
                 68***.*****55.....***********.........***********.............889********************************** PP

                 .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT-- CS
       RVT_1  99 tklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglk 197
                                          +g++e+ ++p+G+ ++P+ f++f+ne++ +l      v +++Y DDili+s+s ee+ +++++v ++l++ +l 
  CDO69315.1 173 -------------------------YGSFEWLVMPFGLSNAPAAFQRFVNEVFVDLLD----VCVVVYLDDILIYSNSLEEHRQHVKEVLRRLRKFKLY 242
                 .........................9*******************************8....9************************************ PP

                 BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 198 inpeKtklvlftvkseevkyLGvtl 222
                   ++K+++      +++v+yLG++l
  CDO69315.1 243 ARADKCEFH-----ATSVEYLGYIL 262
                 *********.....9*******975 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   2.2e-34   5.8e-31       2      96 ..     326     420 ..     325     425 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 2.2e-34
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgr 96 
                  ++ ++++f++lk+a+tsap+L+h +pd+++++etDaSd++i+++Ls + + g+++p+af Sr+ls ae ny+t++k llAi++++k++rhyl+g+
   CDO69315.1 326 DQRCRDSFNALKKAFTSAPILHHWEPDRQITVETDASDYAIAGILSITTESGELHPVAFHSRTLSGAELNYDTHDKDLLAIFECFKTWRHYLEGS 420
                  688******************************************************************************************96 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.2   2.3e-19   5.8e-16       4      57 ..     583     638 ..     581     639 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 2.3e-19
  Integrase_H2C2   4 slrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     +lr ++l++ Hd+  agH G +kt +++ r+y Wpg+r+ v++y ksC++C r+k+
      CDO69315.1 583 DLRLRVLRSRHDHptAGHWGQNKTQALVLRNYAWPGLRAYVRDYMKSCTQCVRAKT 638
                     79***************************************************997 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.62   1.6e+03      38      93 ..     390     459 ..     381     465 .. 0.64
   2 !   54.3   0.0   5.6e-18   1.4e-14       3     118 ..     655     768 ..     653     769 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.62
         rve  38 laealsdemdastvlalleravarfggve....pervlsDngs.eytsk.........afrefladlgir 93 
                  +  l   +  +++la+ e++  +++ +e    p  v++D+   ey s          ++ efl++++  
  CDO69315.1 390 SGAELNYDTHDKDLLAIFECFKTWRHYLEgsgtPIDVVTDHKNlEYFSTtklltrrqaRWSEFLSQFNLV 459
                 4444444444455555555555555555566699999999864477777788888888888888887765 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 5.6e-18
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp   +++D+   ++  + gg   +lvvvd  ++ ++ +++ d  +as +++l  + v + +gv p  v+sD+gse++s+ fr + + l++r+ ft  +
  CDO69315.1 655 RPWNSISMDLIeQLP--SSGGYTAILVVVDRLTKQAIFIPTHDTLTASELADLFVMHVFSKHGV-PSHVTSDRGSEFVSHFFRSLRKALDMRLHFTSGY 750
                 677789999995555..77779******************************************.********************************** PP

         rve 101 rpqdnGkvErfhrtlkde 118
                 +p+  G  Er ++tl++ 
  CDO69315.1 751 HPEGDGQTERVNQTLEQY 768
                 ***************985 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   7.4e-09   1.9e-05       4      38 ..     599     633 ..     597     634 .. 0.97

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7.4e-09
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaC 38 
                  H G+nk+ al+ r Y w+g+ + v++  +sC++C
  CDO69315.1 599 GHWGQNKTQALVLRNYAWPGLRAYVRDYMKSCTQC 633
                 6********************************** PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     1e-06    0.0027       1      53 [.     954    1009 ..     954    1010 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1e-06
                  EEEEEEEEEEEETTEEC..EEEEEEETTSTG..GGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo    1 yeVerIidhrtdkdgle..leYlVKWkglpy..sentWEpeenlekcfqelideFkk 53  
                  ye+ +I+d++ d+ +++  l YlV W g+    +e  W  + +l++  qel+  F++
  CDO69315.1  954 YEILEILDSKLDRHRKTckLLYLVCWAGYEGtdEETLWILAMELGHT-QELVSDFHR 1009
                  67789*************************9744448********99.*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 6643.92
//
Query:       CDO69316.1  [L=255]
Description: hypothetical protein BN946_scf184976.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.47   10.6  20.7       0.78    9.9   8.2    2.1  2  CENP-Q    CENP-Q, a CENPA-CAD centromere complex subunit
        4.1    7.4  12.5        1.8    8.6   1.6    2.1  2  RP-C_C    Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.6   0.00074       6.6      40      89 ..      15      64 ..       7     137 .. 0.67
   2 ?    9.9   8.2   8.7e-05      0.78      41     126 ..     163     249 ..     158     255 .] 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00074
      CENP-Q 40 qLspelhslelLeaeiekeeralerdyea.LreLeknakaearerkeklkk 89
                 L+ +l+  e+L+a +e+ er+ +  ++a  ++ e++a+ +a++++  +k+
  CDO69316.1 15 RLDRMLREAEELRAAVERDERERAAREKAeREQREREAREKAEQERL-AKE 64
                57778888888888888777766544444044444444444444333.222 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8.7e-05
      CENP-Q  41 LspelhslelLeaeiekeeralerdyeaLreLeknakaeare..rkeklkkehvllqesdseelslleassdevlgea.sgtvfsdlep 126
                  +++l  ++ L + +++  ++l++  ++Lr+L ++a+ + +e  +++   + + +++  ++e+  +++++ +  +ge+ +g++++d + 
  CDO69316.1 163 MQTLLVEVQGLCRSYDRTSEELKSARKELRTLRESAEVLLKEaeWRK--AQVEAYVEYLEEEAVAENDEEYEGSSGEEsEGEDSEDSDG 249
                 578888999****************************9988842444..3333444444444433333333333333324444444443 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.5    0.0045        40      20      64 ..      11      55 ..       7      80 .. 0.71
   2 ?    8.6   1.6    0.0002       1.8      20      90 ..     179     249 ..     162     255 .] 0.69

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0045
      RP-C_C 20 atlaeleelleelealreevenalesalkaenssanesqnerhiq 64
                +  ++l ++l+e e+lr++ve+  ++++ +e+++ ++ + e++ +
  CDO69316.1 11 TPRERLDRMLREAEELRAAVERDERERAAREKAEREQREREAREK 55
                5678999**************999777777765555444443332 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0002
      RP-C_C  20 atlaeleelleelealreevenalesalkaenssanesqnerhiqnsnpdsssesepasekereekeaaaa 90 
                  t++el+++ +el +lre +e +l++a++++ +     +  ++    ++d+++e ++  e+e e +e+++ 
  CDO69316.1 179 RTSEELKSARKELRTLRESAEVLLKEAEWRKAQVEAYVEYLEEEAVAENDEEYEGSSGEESEGEDSEDSDG 249
                 5789********************99999998888877665555555555555554444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1984  (0.110659); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 1723.03
//
Query:       CDO69317.1  [L=105]
Description: hypothetical protein BN946_scf184976.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-17   63.8   0.0    1.5e-17   63.4   0.0    1.1  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    9.5e-08   32.3   0.0    1.4e-07   31.8   0.0    1.3  1  RT_RNaseH    RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   1.7e-21   1.5e-17       2      65 ..      41     104 ..      40     105 .] 0.97

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.7e-21
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrkl 65 
                  ++ ++++f++lk+a+tsap+L+h +p++++++etD Sd++i+++Ls + + g+++pi f Sr+l
   CDO69317.1  41 NQRCRDSFNALKKAFTSAPILHHWEPNRQITVETDTSDYAIAGILSITTESGELHPIVFHSRTL 104
                  789***********************************************************98 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.5e-11   1.4e-07       2      40 ..      66     104 ..      65     105 .] 0.96

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.5e-11
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE- CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrkl 40 
                 p++++++etD sd++i+++Ls ++e+ge +pi f Sr+l
  CDO69317.1  66 PNRQITVETDTSDYAIAGILSITTESGELHPIVFHSRTL 104
                 899**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 747.08
//
Query:       CDO69318.1  [L=440]
Description: hypothetical protein BN946_scf184976.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-10   38.7   0.1    1.9e-09   37.6   0.1    1.6  1  Retrotrans_gag  Retrotransposon gag protein
    4.4e-05   23.3   0.0    8.3e-05   22.4   0.0    1.4  1  DUF4939         Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
      0.015   15.3   1.4      0.029   14.4   1.4    1.5  1  zf-CCHC         Zinc knuckle
        4.1    6.4   7.3        5.9    5.8   7.3    1.2  1  FAM199X         Protein family FAM199X


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   4.3e-13   1.9e-09       3      94 ..     186     281 ..     184     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4.3e-13
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekfl 91 
                     as+ l+  A++w++ +  ++         +s+  ++++++ +f p +++ q++++l +lr  +++ +++Y+t+f++l +q++  +  +a+  +f+
      CDO69318.1 186 ASSYLKVMALAWFELYLLERNSGnppefLDSYVVFQEELRVNFGPYNVTGQAKHDLENLRMaDNQRIAKYITQFNHLTTQVR--WGRAALHYQFY 278
                     67777778999998765554444489999*****************************************************..*********** PP

  Retrotrans_gag  92 aGL 94 
                     +GL
      CDO69318.1 279 KGL 281
                     **9 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.9e-08   8.3e-05      22     105 ..     140     229 ..     121     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.9e-08
     DUF4939  22 wrnpipfpetfdG.dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi.kkds....pllndyraflaemkrvfG 105
                  r  +  p++fdG d  +l  f  q         ++f++d+ kvt+  + l+  al w   y+ +++s     +l+ y  f +e++  fG
  CDO69318.1 140 ERHNVREPNQFDGsDPSKLHSFFTQLELVFKACPRMFDTDKKKVTYASSYLKVMALAWFELYLlERNSgnppEFLDSYVVFQEELRVNFG 229
                 56667889****95679*********99999999************************9888636676554459*************999 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.4   6.5e-06     0.029       2      18 .]     389     405 ..     388     405 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.5e-06
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                  C+ CG+ GH++  Cpk
  CDO69318.1 389 LCHFCGGSGHVSTVCPK 405
                 5**************97 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.3    0.0013       5.9     198     280 ..     301     383 ..     289     389 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0013
     FAM199X 198 eswkrssyssastsgvsaasssnasmvssassstasvgssaansaanisrahsdsnls.saaerirdskkrskqrklqqkalrk 280
                 e+ + ss +s s+sg s++s+s++   s +s  + s gs+ ++s++   ra s +  + s       + k  k+ kl q   ++
  CDO69318.1 301 EQARESSGGSKSSSGTSGKSTSES-KPSLSSRPSQSLGSTPSTSSSATPRASSGTPKTpSKQATKPYADKLGKDGKLTQEEHQR 383
                 566778889999999999887764.34444444555666666677778888887766633333334566777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3032.89
//
Query:       CDO69319.1  [L=305]
Description: hypothetical protein BN946_scf184976.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-16   58.5   0.0    9.8e-16   58.0   0.0    1.3  1  Pirin_C   Pirin C-terminal cupin domain


Domain annotation for each model (and alignments):
>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   5.5e-20   9.8e-16       4      87 ..     216     304 ..     213     305 .] 0.90

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 5.5e-20
                 EEE.-TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-....SSSEEEEE--SS-EEEEEEEE----S--EEETTEEESS CS
     Pirin_C   4 ltl.eagaelelplpegleaavyvleGelevggerseieeeqlavlg....dgdslvvkaeekgarvlLlaGePlgepvvqyGpfVmnt 87 
                 +++ ++g++++++++ ++++++y ++G+++vg+e+++ e+  ++vl+     ++ + +++ e+g++++++a ePl++pvvqyGpfVm +
  CDO69319.1 216 VNMsKKGSSIFQEISVDWTVFIYLFKGTATVGDETTPNEKYYTLVLDsgkdGETGISITSAEDGMEFVIVASEPLNQPVVQYGPFVMTS 304
                 555257899**************************9999*99****9887666779999999*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2115.56
//
Query:       CDO69320.1  [L=965]
Description: hypothetical protein BN946_scf184746.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-08   33.0   0.0    7.2e-08   31.9   0.0    1.4  1  Transposase_21  Transposase family tnp2
  ------ inclusion threshold ------
       0.16   12.0   0.0        0.4   10.8   0.0    1.6  1  DUF4214         Domain of unknown function (DUF4214)


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     8e-12   7.2e-08      28     149 ..     322     441 ..     307     450 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8e-12
  Transposase_21  28 rnvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlra 122
                     r v l ++ dG   +++  ++  +W  + +  nl P +  k++++l+  +ipGpk+P+ ++d +l P    +  l +eG+++++a  +++   r 
      CDO69320.1 322 RYVVLLFSIDGAQLYRN--KQSDCWIYIWVVANLGPDKRYKKRFILVGGVIPGPKHPD-NLDSFLYPGFFHVSALMREGLKVWNAALNSEALSRI 413
                     66777888899999985..55579*********************************7.7*****************************9999** PP

  Transposase_21 123 vllwtindfPalstlsGlst.kgklacv 149
                      +   + d Pa++t+ G++  +g  +c 
      CDO69320.1 414 FVALGMADGPAMATVQGTVGhHGARGCR 441
                     *****************98614666664 PP

>> DUF4214  Domain of unknown function (DUF4214)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.4e-05       0.4      39      64 ..     396     421 ..     382     426 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.4e-05
     DUF4214  39 aGlnywadqLksgaetReevllgfae 64 
                 +Gl+ w   L+s+a +R+ v+lg+a+
  CDO69320.1 396 EGLKVWNAALNSEALSRIFVALGMAD 421
                 79**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 6353.65
//
Query:       CDO69321.1  [L=459]
Description: hypothetical protein BN946_scf184746.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-27   96.8   0.0    4.1e-27   95.7   0.0    1.5  1  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   2.3e-31   4.1e-27      17     236 ..      12     293 ..       3     302 .. 0.69

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 2.3e-31
                 SS-S-----BS--EEEEEEEET.TT.......-SB--GGG---TTEEEEEEEEETTSSSB--EE--.---------....................... CS
      Velvet  17 fgdkdrrpidPppvvqLrvtda.et.......nsevdveeldssffvvtvdLwsedgtkevnlvkssssasssiss....................... 84 
                 +  kd+rp+dPppvv  r +++ +        + e+d++++ +   v++vdL+++  + e +  +s+ s+s+++ s                       
  CDO69321.1  12 YATKDKRPLDPPPVVLCRFFEVvDRgngagpvEVEIDPTDAVTLGTVCHVDLFPVPPEIEQSAGQSQHSPSQALGSvlpplrmgeqaappsghlshrfp 110
                 5679*****************75553444444555599999999**********775555444444455555555566677666655443333333333 PP

                 ..............---------------------------------------.............................................. CS
      Velvet  85 .............easssssqsseesssspksqassaessapsssaapsaqee.............................................. 124
                              +                   + +a++s p+s+       +                                              
  CDO69321.1 111 spaslldiggpgmS------------------TSMQASQSIPYSQ-------Tlpplftiyppqtflqpvppaafanslpggstlrgsmqppvaqypwp 184
                 33333333332221..................1111222222222.......12344555666666677777777777777777777777779998888 PP

                 ..-------------------EESEEE--EEE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE---EEEE-T CS
      Velvet 125 ..kekkeatlssssnqasskltrnLiGslvasafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfSdpFtVysa 221
                   ++   a  +    ++s  +t +L G ++++a    d ++k+   Fvf+DL+V+ eGtF Lr+r ++  +       +  ++pvla+++  pF++ys 
  CDO69321.1 185 vhDPDIVAWVDNFPLRESTCCTIMLAGATFTEAVIV-DYKGKNSAVFVFSDLAVKMEGTFVLRYRTFSTCS----ECPAPPRFPVLAQCYGGPFKIYST 278
                 65333333333333455788999*********8887.77799***************************99....5566689***************** PP

                 TT--------HHHHH CS
      Velvet 222 kkFpGvlesTaLska 236
                 k+FpG+  sT+L+ka
  CDO69321.1 279 KDFPGLKASTDLTKA 293
                 *************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 3105.14
//
Query:       CDO69322.1  [L=511]
Description: hypothetical protein BN946_scf184746.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.1   0.2    0.00044   20.1   0.2    1.4  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.069   13.1   0.5       0.16   11.9   0.5    1.6  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   4.9e-08   0.00044       6      39 ..      20      53 ..      17      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.9e-08
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrvaldtp 39
                +E+L+ I+  L+p+d+l+++ VC   ++v+ +tp
  CDO69322.1 20 EELLVLILLDLEPRDILSCTKVCHALADVVERTP 53
                59****************************9997 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   1.8e-05      0.16       6      38 ..      18      50 ..      14      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwrilid 38
                L +e+l  IL  L+++d+l++ +V+  + +++ 
  CDO69322.1 18 LAEELLVLILLDLEPRDILSCTKVCHALADVVE 50
                6689*********************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3537.60
//
Query:       CDO69323.1  [L=641]
Description: hypothetical protein BN946_scf184746.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-15   58.5   0.0    3.4e-15   57.1   0.0    1.8  1  Metallophos    Calcineurin-like phosphoesterase
      3e-05   24.3   0.0     0.0079   16.4   0.0    2.3  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   3.8e-19   3.4e-15       1     202 [.     268     555 ..     268     566 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 3.8e-19
                  EEEEEEESBTB............TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS..HHHHHHHHH.HHHHHHH.TSEEEEEC-TTS...CHHH CS
  Metallophos   1 lrilvigDlHl............algggqlddllkllddllreekpdlvllaGDlvdrg..dlekellel.laalvky.pipvylllGNHe...gfee 79 
                  ++i++++DlH+            + + ++ + + +ll + l+ ekpdlv+++GD  ++   +++++ +   +a+ v   +ip++++ GNH+   g + 
   CDO69323.1 268 FKIMQVADLHYsvsvgecrdtviSPCTASDNLTSTLLGRMLDAEKPDLVVFTGDQLNGQgtSWDSKSVLAkFAKAVTKrGIPWAAVFGNHDdedGASR 365
                  79****************************************************9999888666654444444444445************7775455 PP

                  HHHHHHHHHHHH......HHHHEHH....HCEEETSEEEEEETTE.EEEEEEESECEEE......................THHHHHHHHHHHSCHHH CS
  Metallophos  80 ellnkygylgif......sepwrsd....aevfnnlplaslgsgs.lkvlllhGgspel......................lvsldklgslnleleap 144
                  e + +y +   +      ++    d    ++++  + +a+  +++ l++++l+ gs++                       +++ ++  s++ + ++ 
   CDO69323.1 366 EAQVRYMQGLPYslveagPK----DihgvGNYVLKVKSADPSKTHlLTLYFLDSGSYYSdmykwfgffapteydylrqdqiDWFMQESASVDAIERPY 459
                  55555444444445433322....24444677777777777777786666666665555455556666655556666666644444444444444444 PP

                  HCC......HHHHHH.......HHHHTTCSEEEEEESSESS.................CSSSCSCCHHHHH........HHHHHTTESEEEEESSS CS
  Metallophos 145 epg......dewlkd.......lekrekadwvivlgHsply.................rgsgylfgdeale........dllkkygvdlvisGHtH 202
                  +p+      d+w ++        ++r  ++  + ++H+pl                  rg+++l g+ a++         ll+  + d+  +GH+ 
   CDO69323.1 460 HPDgakdlgDIWKRQaadqvipGSRRLAKPNALMFFHIPLAesysaadvdpktgraldRGISDLEGPGAAKrqagffhkALLQALESDHLAGGHIP 555
                  444777887777777999999989999999999999999999999999999999999999999999999999999999777888888888888875 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.8e-07    0.0079       3      75 ..     270     367 ..     268     399 .. 0.64
   2 !    5.7   0.0    0.0018        16      91     145 ..     530     584 ..     502     606 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.8e-07
  Metallophos_2   3 laiiSDlH.................snldaleavl.ealkevgvdaiihaGDl..eeeep.....evleellela.....pvlaVrGNnDeevvee 68 
                    ++ ++DlH                 ++ +++ ++l + l+++++d+++++GD   + +       +vl+++ +       p  aV+GN+D    +e
     CDO69323.1 270 IMQVADLHysvsvgecrdtvispctASDNLTSTLLgRMLDAEKPDLVVFTGDQlnG-QGTswdskSVLAKFAKAVtkrgiPWAAVFGNHD----DE 360
                    55667777666666666555555543333344444133456789********5431.2223444458888888778999***********....33 PP

  Metallophos_2  69 dvlreaa 75 
                    d + ++a
     CDO69323.1 361 DGASREA 367
                    3333333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0018
  Metallophos_2  91 gekvlliHgdplgvkdalaellkeaeegsdvvvcGHtHvp.evekeggvlvvnPGs 145
                    +++++++H+  l  + + ++l+  +  +++vv+ GH H   ++++ +gv++ + G 
     CDO69323.1 530 KRQAGFFHKA-LLQALESDHLAGGHIPEVKVVANGHCHLTeNCKRVKGVWLCFGGG 584
                    4557888886.3444444555555778888********986888899***998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4485.51
//
Query:       CDO69324.1  [L=557]
Description: hypothetical protein BN946_scf184746.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      0.008   16.8   0.8      0.032   14.9   0.8    2.0  1  AKNA          AT-hook-containing transcription factor
  ------ inclusion threshold ------
        1.2    9.5   5.2       0.66   10.3   0.7    2.6  3  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.8   3.6e-06     0.032      15      65 ..     111     158 ..      96     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
        AKNA  15 ylkglrsetlaqklssskgqpgkfdpsreleaeIyqlgqrleeLkdqtdql 65 
                    + rs+t +qk  +s +q +++d    + +eI++l +r+e L  + d+l
  CDO69324.1 111 TGLANRSQTELQKTMGSPAQSSELDK---VSKEISHLAIRMEALDKKFDNL 158
                 45578999999999999666666555...77*************9999987 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.16   1.4e+03      22      50 ..      76      99 ..      64     125 .. 0.47
   2 ?    5.7   0.4     0.002        18      23      59 ..     117     150 ..      99     158 .. 0.59
   3 ?   10.3   0.7   7.3e-05      0.66       7      56 ..     131     182 ..     126     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
  ABC_tran_CTD 22 eeiaeleaeladpelysdpeklaelsael 50
                  e++++l+  ++d+       +l ++++ +
    CDO69324.1 76 ERLSQLTLDFNDAK-----RELLAVQRLY 99
                  33333333333332.....3333333333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.002
  ABC_tran_CTD  23 eiaeleaeladpelysdpeklaelsaeleeleaeLee 59 
                    ++el++ + +p+   ++ +l ++s+e+  l    e+
    CDO69324.1 117 SQTELQKTMGSPA---QSSELDKVSKEISHLAIRMEA 150
                   4788999999997...445677777765554433333 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 7.3e-05
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleaeladpely.sdp.eklaelsaeleeleae 56 
                     el+++ +eI  L  ++++l++++ + ++  s++ ++l+ ++a++ +l a+
    CDO69324.1 131 SSELDKVSKEISHLAIRMEALDKKFDNLNVLnSTQlQALQTIQAQQGQLLAA 182
                   679************************9998444467777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4217.79
//
Query:       CDO69325.1  [L=176]
Description: hypothetical protein BN946_scf184746.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-16   59.2   3.5      7e-16   58.6   3.5    1.3  1  Nnf1      Nnf1
  ------ inclusion threshold ------
       0.44   11.0   9.0      0.098   13.1   5.5    1.7  2  ZapB      Cell division protein ZapB
       0.78    9.6   6.7       0.51   10.1   3.7    2.0  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   3.5   1.2e-19     7e-16       9     106 ..      58     152 ..      50     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.2e-19
                 HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCHH-..T..........TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1   9 qmvefleesiraefeeIleerdvvekLneLDdlieeAkerree..geeeasrpevpphtLpPeeliaahlapakkeeqeeLearlqeleaenaelaeev 105
                  + ++le+si ++ ee++++ +v+e L+ L++++  A+ r+++   +++ +r     ++L+P+ +++a+ +p++++e+++L+a+l++l +en el+ ++
  CDO69325.1  58 LVSSRLESSITENCEELFKKYNVKENLDNLHAVVTAARARKQAgyDGKDVWR-----EDLQPRAAVRARTVPLLEKERDRLRAQLSQLTKENSELQSQM 151
                 6789**************************************9333445554.....7999***********************************998 PP

                 H CS
        Nnf1 106 e 106
                 +
  CDO69325.1 152 R 152
                 6 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.83     5e+03      37      37 ..      80      80 ..      62     100 .. 0.56
   2 ?   13.1   5.5   1.6e-05     0.098      18      69 ..     121     175 ..     110     176 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.83
        ZapB 37 l 37
                 
  CDO69325.1 80 V 80
                2 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.6e-05
        ZapB  18 dtitlLqmeieeLkeeneelkeenrele...eeneqlkeereawqerlkkLLgkl 69 
                  t+ lL +e ++L+++ ++l++en el+   + n q kee  a  ++l  +L+k 
  CDO69325.1 121 RTVPLLEKERDRLRAQLSQLTKENSELQsqmRLNVQAKEEADADAAKLLDMLDKV 175
                 58899***********************888778888888888888888888875 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.16   9.3e+02      26      66 ..      84     101 ..      73     105 .. 0.54
   2 ?   10.1   3.7   8.6e-05      0.51      22      61 ..     126     165 ..     120     174 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXX CS
       DivIC  26 iaalqaelaklkaeneeLeaevkdLksdedyieerARselg 66 
                 ++ l a +                        ++rAR++ g
  CDO69325.1  84 LDNLHAVVT-----------------------AARARKQAG 101
                 333333333.......................455666555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXX CS
       DivIC  22 lkqeiaalqaelaklkaeneeLeaevkdLksdedyieerA 61 
                 l++e+++l a+l +l++en eL+++ ++  + ++  ++ A
  CDO69325.1 126 LEKERDRLRAQLSQLTKENSELQSQMRLNVQAKEEADADA 165
                 799**********************998866666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1463  (0.0815996); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1265.20
//
Query:       CDO69326.1  [L=472]
Description: hypothetical protein BN946_scf184746.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.4   0.0       0.31   10.7   0.0    1.3  1  DUF789    Protein of unknown function (DUF789)


Domain annotation for each model (and alignments):
>> DUF789  Protein of unknown function (DUF789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05      0.31     121     172 ..      50     101 ..      10     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.7e-05
      DUF789 121 seseeessssdesessekeskgellfeYfEsesPyeRepLadkiseLaskfp 172
                 +++++++++s  ++ ++++++g+ +f++ E ++P + +pL+ ++++ +   p
  CDO69326.1  50 HAEDTHDDESGVEDDHHDHHDGSTVFDHSEASRPTQQHPLSRQVANTIWLIP 101
                 223333334444555678899**********************998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3726.08
//
Query:       CDO69327.1  [L=568]
Description: hypothetical protein BN946_scf184746.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-07   29.1   2.4    6.6e-07   29.1   2.4    2.3  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    1.4e-06   28.2   2.6    1.4e-06   28.2   2.6    1.7  1  zf-RING_UBOX  RING-type zinc-finger
    1.5e-06   28.0   2.3    3.2e-06   26.9   2.3    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    2.5e-05   24.1   4.8    5.4e-05   23.1   4.8    1.6  1  zf-RING_5     zinc-RING finger domain
    3.2e-05   23.7   8.9    0.00024   20.9   8.9    2.1  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    7.7e-05   22.8   3.2    7.7e-05   22.8   3.2    1.9  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
     0.0008   19.7  12.4     0.0083   16.4  12.4    2.2  1  zf-RING_2     Ring finger domain
     0.0012   18.7   0.6     0.0028   17.5   0.6    1.6  1  zf-RING_6     zf-RING of BARD1-type protein
     0.0099   16.0   2.9       0.02   15.0   2.9    1.5  1  zf-RING_10    zinc RING finger of MSL2
  ------ inclusion threshold ------
      0.011   15.6   1.5      0.011   15.6   1.5    2.3  2  Prok-RING_4   Prokaryotic RING finger family 4
       0.56   10.5   5.2          2    8.8   5.2    1.9  1  zf-rbx1       RING-H2 zinc finger domain
        2.2    8.0   5.4       0.15   11.7   0.3    1.7  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type


Domain annotation for each model (and alignments):
>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   2.4   4.4e-10   6.6e-07       2      33 ..     265     296 ..     264     298 .. 0.93
   2 ?    0.2   1.5      0.47   7.1e+02      31      40 .]     314     323 ..     311     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.4e-10
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLee 33 
                 C++C++ l +p  + pCgHv C  C+l++ ++
  CDO69327.1 265 CQVCMELLLKPYGLSPCGHVLCMTCLLEWFRS 296
                 ***************************99875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.47
  zf-C3HC4_2  31 LeekneCPlC 40 
                 L +k+ CP C
  CDO69327.1 314 LYRKKTCPCC 323
                 66899***** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   2.6   9.6e-10   1.4e-06       1      26 [.     265     293 ..     265     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 9.6e-10
  zf-RING_UBOX   1 CpIClelftdPlv.l.pCGHtFCreCl..w 26 
                   C +C+el+ +P   l pCGH++C  Cl  w
    CDO69327.1 265 CQVCMELLLKP-YgLsPCGHVLCMTCLleW 293
                   ***********.7777***********765 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   2.3   2.1e-09   3.2e-06       1      41 []     265     323 ..     265     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.1e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC..................TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks..................rkkvkCPlC 41 
                 C++C+e + +p  l++C+H +C +C++++ +s                   +k++CP C
  CDO69327.1 265 CQVCMELLLKPYGLSPCGHVLCMTCLLEWFRSappgddnmldddhpnallYRKKTCPCC 323
                 *******************************9999999999999988888667778888 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   4.8   3.6e-08   5.4e-05       2      44 .]     265     325 ..     264     325 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.6e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll....................ekeavCpiCrk 44 
                 C++C+e l   +++ l +CgH++C +Cl + +                     ++++Cp Cr+
  CDO69327.1 265 CQVCMELL--LKPYGLSPCGHVLCMTCLLEWFrsappgddnmldddhpnallYRKKTCPCCRT 325
                 ********..99*******************9*****************************95 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   8.9   1.6e-07   0.00024       2      47 ..     262     327 ..     261     330 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.6e-07
                 GSB-TTTSSS.BS-EEETTEEEEEE-HHHHHHHHH....................TT-B-TTT--B- CS
  zf-C3HC4_3   2 deeCviCler.prnvvllpCgHlvlCeeCaekllk....................rkkkCpiCrrpi 47 
                 + +C++C+e   +   l pCgH+ lC +C+ ++ +                    rkk+Cp+Cr+ +
  CDO69327.1 262 NLTCQVCMELlLKPYGLSPCGHV-LCMTCLLEWFRsappgddnmldddhpnallyRKKTCPCCRTVV 327
                 679******7578899*******.*********999****************************976 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   3.2   5.1e-08   7.7e-05       1      30 [.     265     295 ..     265     300 .. 0.91
   2 ?   -2.6   0.8       4.2   6.3e+03       1       4 [.     320     323 ..     317     332 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.1e-08
  zf-C3HC4_4   1 CPiCldYLekPvsle.CGhsfClsCisslqk 30 
                 C +C+++L kP  l+ CGh+ C++C+ ++  
  CDO69327.1 265 CQVCMELLLKPYGLSpCGHVLCMTCLLEWFR 295
                 9************955**********99865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.2
  zf-C3HC4_4   1 CPiC 4  
                 CP C
  CDO69327.1 320 CPCC 323
                 5555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4  12.4   5.6e-06    0.0083       2      44 .]     264     324 ..     263     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.6e-06
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst....................CPlCr 44 
                 +C +C+e l +++ +   pCgHv + +Cl +w+rs +                     CP+Cr
  CDO69327.1 264 TCQVCMELLLKPYGLS--PCGHVLCMTCLLEWFRSAPPgddnmldddhpnallyrkktCPCCR 324
                 7*****9998877766..9*************9999989999999999999999999999998 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   1.9e-06    0.0028       4      44 ..     259     299 ..     256     301 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
   zf-RING_6   4 lekllrcsrctdilrepvclggcehifcsncisdcfgsgcp 44 
                 +e  l c  c ++l +p  l  c h++c  c+ + f s  p
  CDO69327.1 259 VESNLTCQVCMELLLKPYGLSPCGHVLCMTCLLEWFRSAPP 299
                 68889***************************999998765 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.9   1.3e-05      0.02       1      30 [.     263     290 ..     263     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
  zf-RING_10   1 lsCvvCckLLvdPlepkekeCqHyvCrlCv 30 
                 l+C vC +LL +P+    + C+H +C +C+
  CDO69327.1 263 LTCQVCMELLLKPYGL--SPCGHVLCMTCL 290
                 79************86..89*********7 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   1.5   7.1e-06     0.011       1      28 [.     265     293 ..     265     301 .. 0.73
   2 ?    1.9   0.3      0.13     2e+02      31      39 ..     318     326 ..     305     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.1e-06
  Prok-RING_4   1 CvlCgeq.ekkailepCgHlvCkeCfdsk 28 
                  C +C e   k   l+pCgH++C +C+ ++
   CDO69327.1 265 CQVCMELlLKPYGLSPCGHVLCMTCLLEW 293
                  66666653344569***********9877 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
  Prok-RING_4  31 ssCPlCqrr 39 
                  ++CP C++ 
   CDO69327.1 318 KTCPCCRTV 326
                  59****975 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.2    0.0013         2      26      55 .]     275     324 ..     252     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
     zf-rbx1  26 pvvlGeCgHaFHlhCiskWlkt....................rkvCPlcr 55 
                 p  l+ CgH+  + C+ +W+++                    +k+CP+cr
  CDO69327.1 275 PYGLSPCGHVLCMTCLLEWFRSappgddnmldddhpnallyrKKTCPCCR 324
                 556789***********************************9999****8 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3    0.0001      0.15       3      38 ..     261     295 ..     259     300 .. 0.85
   2 ?   -3.7   0.8       6.7     1e+04       5      14 ..     318     327 ..     316     330 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
  Zn_ribbon_17   3 llksCayCelavkgrvvlcgvCeHvlHasCarewfe 38 
                   ++ +C++C   + + + l + C+Hvl   C+ ewf 
    CDO69327.1 261 SNLTCQVCMELLLKPYGLSP-CGHVLCMTCLLEWFR 295
                   56789999988888888865.**************7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.7
  Zn_ribbon_17   5 ksCayCelav 14 
                   k+C  C + v
    CDO69327.1 318 KTCPCCRTVV 327
                   6777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3841.34
//
Query:       CDO69328.1  [L=604]
Description: hypothetical protein BN946_scf184746.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-51  175.5   0.0    3.8e-32  111.6   0.0    2.0  2  Nucleopor_Nup85  Nup85 Nucleoporin
  ------ inclusion threshold ------
       0.19   11.4   0.0       0.48   10.2   0.0    1.6  2  GGDEF            Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> Nucleopor_Nup85  Nup85 Nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   4.3e-36   3.8e-32      86     408 ..      94     416 ..      59     419 .. 0.80
   2 !   61.8   0.0   5.1e-21   4.6e-17     416     547 ..     445     591 ..     439     601 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 4.3e-36
                      SHHHHHHHHHHHHHHHSSST..T...HHHHHHHHHHHHHTTS--..SHHHHHTTCCSS-CSSSSSGSHHHHHHHHHHHHTT-HHHHHHHHTTTT CS
  Nucleopor_Nup85  86 kleeleliwnlleilyfdkd..s...rstllesLleWvnrsdgefppseelieevleskeeeeveehpdfWklvnqlllrGlfdqavalLelsg 174
                        e   ++w ++ ++ +     +   +  + ++L+eW+n    e  ps ++  ++    ++e++ e+p fW +++++ lrGl +    +L+  +
       CDO69328.1  94 DAEHYRCLWTCFSLFAVLYLpePgfeDAPVGDELMEWLNTHFVE--PSTQEGDDLS---SQERPWEDPAFWPYLTRTSLRGLSKASTFFLNVLS 182
                      25666677777666555544332456**************7777..9999999999...678*********************99987776555 PP

                      TTTHHHHS-HHHHHHHHHHHHHHTT--SS..........-HHHHHHHHHHHHHHHHHHHTS---S-....HHHHHHHHHHHHHHHT-HH...HH CS
  Nucleopor_Nup85 175 lleleefecevsnnlvedlielLkkmPvysveeglslsefekkwreWksevlellqngsfseqkis....gelrdnledllkilsGnes...ki 261
                      +  ++      +++l ++l  lL + P+   ++  +  +f  + r+Wk++v++l+ + +   ++++    +   d ++d++ +l G  +    i
       CDO69328.1 183 KHPST-----YLQSLAQQLSPLLTNHPRL--YQFSAERDFAVASRRWKDKVKTLRLELDRVPESERddgfENWWDRFSDIVGVLEGRGEvvkRI 269
                      55433.....34778************87..67777888***************9988853222221111334578999*********977744 PP

                      HHT-.SSHHHHHHHHHHHT---THH.HHHHHHHHHS....---TTSTTHHHHHHHHTS--GGGHHHHHHH..HHHHHHHHHHHHHHTTSS--.- CS
  Nucleopor_Nup85 262 leys.etWyellvglllYyiPtlkkleylqlsakkcl...pedetneleqlclailegdilsvlkelesllddswfaahladLleakgllee.a 350
                      +     +W e+ + + ++++  l   + l +++ + l   p+d t + + +  a+l g + ++l e+ +l  d w+aahladL++  +l++  a
       CDO69328.1 270 CTELgADWKEVCSVWGIFVDTRLRRQD-LPEVVAQVLdemPPDPTDREDMVHSALLLGRPTQALSEAAQL--DIWLAAHLADLMDPIELIDSeA 360
                      4444489****************5535.66666666666699***999**********************..******************6433 PP

                      --S---SSSTTHHHHHHHHHHHT-TTTHHHHHHHHHS-SHHHHHHHHHHGGG----SH CS
  Nucleopor_Nup85 351 sseledlflreyllleyasellshkslWqvaigylslcpsegraaleelLprvpletn 408
                        ++ +l+lr++ +l+ya +l +++ lW + ++y+ +c   g ++  ++L rvpl+ +
       CDO69328.1 361 --DDSELSLRQHYILSYAGYLRTDPALWRITVDYMYSCGAVGSGMADQVLMRVPLRLE 416
                      ..4589************************************************9866 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 5.1e-21
                      HHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXHHHHHHHHHHHHHHHHHXX....XXXXHHHH...............HHHH CS
  Nucleopor_Nup85 416 siCaklkLpevaksickilgqrllkegrlgeAltwfskagdielvkriawqlfeasllegeplsedlddnlgsai...............llsq 494
                      + C +++ +e+++ +c+i++q+ +ke+++g A++ +  a+d + + r+ + ++e+++ +g  + ++l +n+ +++               +   
       CDO69328.1 445 ETCFEYQREEIRRMVCRIAAQTFVKEKEYGLAISYCTSAEDWAGLGRVVDLVLEEYIAQGPEQFARLVANIAPSLhalrtdagtkilapgVFLH 538
                      67999999**********************************************************************************999* PP

                      HHHHHHHHHHHXXXXXHHHHHHHHHHHHHHHHXXXXXXXHHHHHHHHHHHHHX CS
  Nucleopor_Nup85 495 rLsflakyreFyklyeeeefkeAaelLisLlespilPkkfwllLladllplle 547
                      rL+f  +  eF++ +++++++ A +  is+++ + +Pk++w  Ll d+l ll 
       CDO69328.1 539 RLMFAVRFAEFHQRRASGDIQGASQNAISMFREEVAPKSWWAVLLCDALDLLR 591
                      **************************************************997 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.98   8.7e+03      59      82 ..     189     212 ..     187     225 .. 0.73
   2 ?   10.2   0.0   5.4e-05      0.48      50     127 ..     399     479 ..     397     499 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.98
                 HHHHHHHHHCCS-TTSEEEEESSS CS
       GGDEF  59 LqevakrLssslrksdlvaRlggd 82 
                 Lq++a++Ls  l ++  +++++ +
  CDO69328.1 189 LQSLAQQLSPLLTNHPRLYQFSAE 212
                 889999999888888777777665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.4e-05
                 H-HHHHHHHHHHHHHHHHCCS-T...TSEEEEESSSEEEEEEECSSHHHHHHHHHHHHHHHHCS-EEETTCCEEE---EEE CS
       GGDEF  50 yGhsvGDevLqevakrLssslrk...sdlvaRlggdeFaillpetsseeaaelaerirrllaklkepvelsgeelyvtisi 127
                  G  ++D+vL++v  rL++++     ++ +aR+    +a +l++++++  +   e irr++ +++ ++ ++++e  + is+
  CDO69328.1 399 VGSGMADQVLMRVPLRLEKNTGAgtsGEEAARIRAGHLAGVLKDVNETCFEYQREEIRRMVCRIAAQTFVKEKEYGLAISY 479
                 68999****************9888899********************999999************999999998777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4316.69
//
Query:       CDO69329.1  [L=103]
Description: hypothetical protein BN946_scf184746.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-07   30.0   0.0    5.3e-07   29.7   0.0    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    6.4e-05   23.1   0.1    9.1e-05   22.6   0.1    1.4  1  TAF            TATA box binding protein associated factor (TA
    0.00014   22.2   0.0    0.00018   21.8   0.0    1.3  1  CENP-S         CENP-S protein
    0.00098   19.4   0.1     0.0018   18.5   0.1    1.6  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0019   18.5   0.2     0.0022   18.4   0.2    1.3  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.061   13.4   0.0       0.07   13.2   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.8e-10   5.3e-07      18      79 ..      35      96 ..      17      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.8e-10
    CENP-T_C 18 krfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                 r   ++g  ++++   ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +kr ++
  CDO69329.1 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGR 96
                33333445667888888899999999********************************9875 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1     3e-08   9.1e-05       9      66 .]      35      92 ..      27      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3e-08
                HHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  9 vkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                ++ +A   G++ +s    ++    +++ l +++++++ +++h+kR++ t+ Dv +AL+
  CDO69329.1 35 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 92
                5555555555555555555555556677899*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     6e-08   0.00018      36      73 ..      49      94 ..      21      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6e-08
      CENP-S 36 elvykq........lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                 l+y++        len+ +D  ++ +HAkR+t+t+ Dv+  ++r+
  CDO69329.1 49 GLIYEEtrgvlkifLENVIRDSVTYTEHAKRKTVTALDVVYALKRS 94
                5555555555555589999*********************999886 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   6.1e-07    0.0018      30      65 .]      56      91 ..      28      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.1e-07
                   HHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 30 aecveefieelaseAaeickkekrKtikaehiklAv 65
                     +++ f+e + + ++ +++++krKt++a ++  A+
     CDO69329.1 56 RGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYAL 91
                   557889*************************98886 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   7.3e-07    0.0022      95     129 ..      58      92 ..      16      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.3e-07
                 HHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  95 alEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +l+ +l+ +  ++  +++haKR+T+t+ D+  A++
  CDO69329.1  58 VLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 92 
                 67899*************************99987 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.3e-05      0.07      37      69 ..      61      93 ..      32     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
  TFIID-31kDa 37 rytssvLedAkvlaehakkkevslddvrlAiqs 69
                  +  +v++d+ ++ ehak+k+v++ dv  A++ 
   CDO69329.1 61 IFLENVIRDSVTYTEHAKRKTVTALDVVYALKR 93
                 57889**********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 767.37
//
Query:       CDO69330.1  [L=138]
Description: hypothetical protein BN946_scf184746.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-50  168.3   3.9    1.1e-49  168.2   3.9    1.0  1  Histone        Core histone H2A/H2B/H3/H4
    1.9e-05   24.7   0.1    3.7e-05   23.8   0.1    1.5  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    4.3e-05   23.8   0.0      7e-05   23.1   0.0    1.3  1  CENP-S         CENP-S protein
    0.00021   21.9   1.8    0.00027   21.5   1.8    1.2  1  PAF            PCNA-associated factor histone like domain
     0.0026   18.0   0.1     0.0055   17.0   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   3.9     3e-53   1.1e-49       1     131 []       1     134 [.       1     134 [. 0.97

  Alignments for each domain:
  == domain 1  score: 168.2 bits;  conditional E-value: 3e-53
                 XXEESXEEEXXXXEEXXXXXXXXXXHT...TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker...kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqeal 96 
                 mar+k++ark+++++ap+k+++ak+++    a+ +   kk++r+rpgtval+eir+yqkst+lli+klpf+R+vrei +++k+dlr++++av+alqea+
  CDO69330.1   1 MARTKQTARKSTGGKAPRKQLAAKSAArktAAATTGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAS 99 
                 9************************99987777788899************************************************************ PP

                 HHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  97 EallvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 Ea+lv+lfe++nl+a+haKRvTi+pkD+ lArrlr
  CDO69330.1 100 EAYLVSLFEDTNLAAIHAKRVTIQPKDLALARRLR 134
                 *********************************97 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1     1e-08   3.7e-05      11      76 ..      72     132 ..      60     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkr 76 
                  +v+ +a++f     +  + + +a+ al++as+ ++  + eD +  a Ha+R ti+ +D+  L +r
  CDO69330.1  72 RLVREIAQDF----KTDLRFQSSAVMALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLA-LARR 132
                 3455566666....56799****************************************85.4555 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.9e-08     7e-05      13      71 ..      72     132 ..      67     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.9e-08
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ ++++ al e   + l +l +D ++ a HAkR ti+++D+ L  R
  CDO69330.1  72 RLVREIAQdfKTDLRFQSSAVMALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLALARR 132
                 5566654423666789999*************************************99766 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.8   7.5e-08   0.00027       1      61 [.       1      59 [.       1      73 [. 0.80

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.5e-08
         PAF  1 mVRTkAdvssarkavaakAprkslgasssssssssssp.kkkkkkyvGGNpvcpRptPaWQK 61
                m RTk ++   rk  ++kAprk+l+a+s + +++   +   kk +      v  R++   QK
  CDO69330.1  1 MARTKQTA---RKSTGGKAPRKQLAAKSAARKTAAATTgGVKKPHRFRPGTVALREIRRYQK 59
                99******...******************999998887444444444444677777777776 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.5e-06    0.0055       2      64 ..      67     130 ..      66     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A   ++e+ e ++ +l + ++  + ++kr ti++++++lA
     CDO69330.1  67 KLPFQRLVREIAQDfKTDLRFQSSAVMALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLALA 130
                    78888888877778799999*****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1005.01
//
Query:       CDO69331.1  [L=340]
Description: hypothetical protein BN946_scf184746.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-45  155.5   0.0    5.9e-44  150.4   0.0    2.0  1  Carb_kinase  Carbohydrate kinase


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   3.3e-48   5.9e-44       1     234 [.      30     309 ..      30     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 3.3e-48
                  EEEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTT.....HTTTS....--SSS-SEEEE-TT-SSSHCHHH....HCH CS
  Carb_kinase   1 vlvigGsedytGAallaalaalrlgaglvsvateseaiavlksylpevivhpll.....edeqa.kileklerldavviGpGLgrdekikk....lle 88 
                  v+v+gG  dytGA+ +a ++alr+ga+l +v++ ++a+ ++ksy+p++ivhp+l      d+   +  ++l+rl+++++GpGLgr++ + +    +++
   CDO69331.1  30 VGVLGGALDYTGAPFFASISALRIGADLSHVICSPTAAGAIKSYSPDLIVHPILredqsPDQVKpTLDSLLSRLHVLIVGPGLGREDYMINyaklAVN 127
                  68***************************************************998875334445667889****************99886644444 PP

                  HHCCCCS-..EEEEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCH.HCCSHHHHHHHHHHHHT.TEEEEESTTSEEEEC.......TTEEE CS
  Carb_kinase  89 evlekdep..lviDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivk.keddrlelarelaqkln.avvllkgekdvivsp.......egevl 175
                   + e+  +  +v+DAd+L+++ q+  + +   + +LTP++ EfkrL++ + +  +    e a +++++l+ ++vl kg++d+i +        ++++ 
   CDO69331.1 128 IAKEQ--GmyVVLDADALWMVGQDLSIIRGYRRAVLTPNVMEFKRLSENLKIdPNIPPEERAMHVSRALGgVTVLQKGASDIICTNtgeatkeQAQLN 223
                  44444..456**************99999*******************9998745555666777777775167899*******998555555556677 PP

                  EE----G............GG-STTHHHHHHHHHHHHHHCTS................SHHHHHHHHHHHHHHHHHHHCCCT-TS-H CS
  Carb_kinase 176 instgss............alakGGsGDvLaGligalLaqne................asyeaaiaaawlhgaasdeaaekkgvgml 234
                  ++s+g+s            ++++GG+GD+L+G++g ++a+ +                 ++ aa+ ++++ ++as++a+ k+g+ ++
   CDO69331.1 224 KISEGESteervvvdvpggLKRCGGQGDILSGSVGTIMAWGKcfesgafgdgsvppsrIPLLAAVGGSMVTRTASRRAFGKHGR-VT 309
                  788876633333333333368**********************************999999*********************99.43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2442.24
//
Query:       CDO69332.1  [L=460]
Description: Aryl-alcohol oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-66  223.9   0.0    3.4e-66  223.6   0.0    1.1  1  GMC_oxred_N    GMC oxidoreductase
    1.9e-05   23.9   0.2     0.0079   15.3   0.0    2.1  2  FAD_binding_2  FAD binding domain
     0.0018   18.5   0.0     0.0089   16.2   0.0    2.3  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0038   16.5   0.1       0.86    8.8   0.1    2.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.006   16.2   0.0        2.7    7.5   0.0    2.2  2  DAO            FAD dependent oxidoreductase
     0.0081   15.4   0.0      0.092   12.0   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.021   13.9   0.1      0.029   13.4   0.1    1.2  1  Lycopene_cycl  Lycopene cyclase protein
      0.031   13.5   0.0      0.061   12.6   0.0    1.4  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.0   1.5e-69   3.4e-66       1     296 []      34     346 ..      34     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 1.5e-69
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl..imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpa 96 
                  +d++v+g+G  gs +AaRLsedps +vl++eag+   +++    ++++   + ++  +++y+  p++ lngr++   +Gk+lGG +++Nw+ ++R  +
   CDO69332.1  34 YDYIVVGSGPGGSPIAARLSEDPSVNVLIIEAGATGFDFQnvEVPALAPDLQPSSPFDWNYTIVPQPGLNGRAFPYSRGKALGGCTAINWMFWVRCAR 131
                  79********************************99999987788888889999******************************************** PP

  GMC_oxred_N  97 adldeWeeeaglegwssdevlpafkkvetaqale..........sdlhgvdgrlgvtekgkeesplnkallkaaeelGlp..vprdlngkhqcGvcll 182
                  +d+d+ ++  g +gws++ +lp+ +k+e+   ++           ++hg+ g +++ + ++   p+ + +++aaee G +    +d+n++++ G  ++
   CDO69332.1 132 DDYDKFADITGDKGWSWNSILPLWNKIERLVPPQdghntkgeidPSIHGTHGAINI-SVHNAPFPTDEPIIRAAEEIGGDfhPIEDYNSGNPLGLAWF 228
                  ****************************776666899999999999**********.999******************9976679************* PP

  GMC_oxred_N 183 gvtcrtgarqstarawLrpalerpnleiltgakaekiil...egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkev 277
                  +     g r+++a+a+L+pal+r+nl++l +++++k++    +g k+   GV++ ++k+  ++  +a+kev++aaGa+n+PqlL++SG+G+ ++L ++
   CDO69332.1 229 QGAIGGGVRNDAATAYLVPALSRKNLDVLIQTQVTKLVQtgvQGGKPVFRGVQFAQSKSAPTHSLTAKKEVILAAGAFNTPQLLLLSGIGPSSDLSKL 326
                  *************************************9898888899999************************************************ PP

  GMC_oxred_N 278 gvdvvvdlp.vGknLqdHpv 296
                  g++++vd p vGknL d+pv
   CDO69332.1 327 GIHTIVDSPsVGKNLSDQPV 346
                  *****************997 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0016       3.5       1      31 [.      35      66 ..      35      70 .. 0.93
   2 !   15.3   0.0   3.5e-06    0.0079     145     204 ..     243     308 ..     228     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0016
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavveke 31
                   D iV+GsG +G   A++++e    +v+++e +
     CDO69332.1 35 DYIVVGSGPGGSPIAARLSEDPSvNVLIIEAG 66
                   88******************9999*****987 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.5e-06
                    HHHHHHHHTCTEEEEESEEEEEEEECTT......EEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 145 arlvesarkagvdfqerteadeLivedg......rvtGavvenpesgrevrirak.avvlatgGfgr 204
                    a lv ++ + ++d++ +t++++L+++ g        +G+ +++++s  ++ ++ak  v+la+g+f+ 
     CDO69332.1 243 AYLVPALSRKNLDVLIQTQVTKLVQT-GvqggkpVFRGVQFAQSKSAPTHSLTAKkEVILAAGAFNT 308
                    56666777777************995.3355799*******************************97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     4e-06    0.0089       1      31 [.      38      68 ..      38     103 .. 0.84
   2 ?   -2.6   0.1         3   6.7e+03      29      54 ..     205     230 ..     201     246 .. 0.70
   3 ?   -3.2   0.0       4.7   1.1e+04      10      24 ..     241     258 ..     231     258 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4e-06
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdrl 31
                   +vG+G +G+ +A++L+++  ++vl++e++  +
     CDO69332.1 38 VVGSGPGGSPIAARLSEDpSVNVLIIEAG-AT 68
                   8****************9899******98.44 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
                    SSSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8  29 drlGGraasyevpgvrvdygahifhg 54 
                    + +GG+ + +e+ +    +g  +f g
     CDO69332.1 205 EEIGGDFHPIEDYNSGNPLGLAWFQG 230
                    67888888777754444566666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.7
                    HHHHH...HHCCTEEEEE CS
  NAD_binding_8  10 vaAyl...Lakagfdvll 24 
                    ++Ayl   L+++++dvl+
     CDO69332.1 241 ATAYLvpaLSRKNLDVLI 258
                    333333335677777775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00038      0.86       1      36 [.      37      72 ..      37      76 .. 0.92
   2 !    5.1   0.0    0.0052        12     121     147 ..     291     318 ..     235     326 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00038
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnignsi 36
                 i++G GP G  +a  l +    ++li+E g+ g  +
   CDO69332.1 37 IVVGSGPGGSPIAARLSEDPSVNVLIIEAGATGFDF 72
                 89****************************988655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0052
  Pyr_redox_3 121 etyeAk.kviiAtGefdkPnklnipGee 147
                  ++++Ak +vi+A+G f+ P++l  +G  
   CDO69332.1 291 HSLTAKkEVILAAGAFNTPQLLLLSGIG 318
                  35666526************99888875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0017       3.8       1      29 [.      35      66 ..      35      82 .. 0.93
   2 !    7.5   0.0    0.0012       2.7     141     207 ..     234     311 ..     108     359 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
                EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29
                d +++G+G  G+ +A  L++ +   V+++e+g
  CDO69332.1 35 DYIVVGSGPGGSPIAARLSEDPsvnVLIIEAG 66
                789*****************9889******98 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0012
                 EEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCEEEEE........EECTEEEE......EEEE.EEE--GGGHH.HH CS
         DAO 141 gqvdpakltaalaraaealGveilegtevtgleeed.gkvwgve........rttpgend......aada.vVnaaGawsd.ll 207
                 g v   ++ta+l  a+ ++  ++l +t+vt+l +++  +++ v+        +      +      +a++ v++aaGa+ + +l
  CDO69332.1 234 GGVRNDAATAYLVPALSRKNLDVLIQTQVTKLVQTGvQGGKPVFrgvqfaqsK------SapthslTAKKeVILAAGAFNTpQL 311
                 45567788999999999999***********9665564445555666565432......022233434558*******966633 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.1e-05     0.092       1      34 [.      34      68 ..      34      86 .. 0.84
   2 ?    1.1   0.0     0.082   1.8e+02      86     119 ..     281     317 ..     227     340 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
                 CSEEEE--SHHHHHHHHHHHH.HTS-EEEEETTHC CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.agakvtlvelegt 34
                 +d++v+G+Gp+G   a +l++  +++v+++e++ t
   CDO69332.1 34 YDYIVVGSGPGGSPIAARLSEdPSVNVLIIEAGAT 68
                 689******************559******86665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.082
                  EETEEECTCEEEEEE.SEEEE---E..EE-BCTCTTC CS
                  xxxxxxxxxxxxxxx.xxxxxxxxx..xxxxxxxxxx RF
  Pyr_redox_2  86 klekkkegdeekiay.dklvlAtGs..sprdlgipGv 119
                  +  ++k+  ++++++ ++++lA G+  +p +l + G 
   CDO69332.1 281 QFAQSKSAPTHSLTAkKEVILAAGAfnTPQLLLLSGI 317
                  3344444556666665889999998555666666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.029       1      35 [.      35      68 ..      35      79 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   D +v+G+Gp g  +Aarl ++ p ++v++iea++ 
     CDO69332.1 35 DYIVVGSGPGGSPIAARL-SEDPSVNVLIIEAGAT 68
                   789***************.999**********975 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05     0.061      17      49 ..      33      65 ..      24      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                  D ++vG+G+ G   a  l+++p ++v+i+e+
  CDO69332.1 33 TYDYIVVGSGPGGSPIAARLSEDPSVNVLIIEA 65
                6799***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3312.57
//
Query:       CDO69333.1  [L=176]
Description: hypothetical protein BN946_scf184746.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1416.45
//
Query:       CDO69334.1  [L=849]
Description: hypothetical protein BN946_scf184746.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-26   91.4   0.0    8.7e-26   90.6   0.0    1.3  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    2.6e-23   82.5   3.6    1.6e-20   73.5   0.1    2.4  2  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
    2.6e-22   79.5   0.0    1.8e-21   76.8   0.0    2.4  3  NAD_binding_1   Oxidoreductase NAD-binding domain
    1.9e-14   53.6   0.0    4.6e-14   52.3   0.0    1.7  1  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
     0.0044   17.2   0.0       0.19   11.8   0.0    2.3  2  NAD_binding_6   Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   2.4e-29   8.7e-26      84     172 .]     305     393 ..     286     393 .. 0.91

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 2.4e-29
                     HTTB-ETT..EEEEEEEEE-TCCTEEEEEEEHHHHC..TTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb  84 kagvkkpearhvvfegadeeleeskygasiplekal..eddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                     +ag+  + ++++ fegade+ +e++y++sipl +a+  ++d++L++ mng+ L+pdhGyPlR + pg+vg+r+vKwlk++++++e++++++
      CDO69334.1 305 EAGMV-TPTKYLNFEGADEP-SEGPYATSIPLMHAMnpSNDIMLVFGMNGRVLHPDHGYPLRTILPGYVGGRQVKWLKKLWITKEPNRSHY 393
                     45664.6789********75.6**************7667**********************************************99986 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.1   4.4e-24   1.6e-20       3      89 ..     423     507 ..     421     507 .. 0.95
   2 !   15.2   1.9   4.7e-06     0.017     119     134 ..     504     519 ..     502     523 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 4.4e-24
                  ---S---EEEE-SS-SEEEE-S.......EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEE CS
  Mo-co_dimer   3 aiydlnvnsvicspeheekvklkea...eetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfwel 89 
                  a ++ +++svi++p+h+e++ l+ +    +tyt++Gya++GgG r++rve+sld+Gk+W+ +  + +e++ r+++     ++++w fw+l
   CDO69334.1 423 ACWEHSLQSVIVKPAHDERICLSGEgclGKTYTVEGYAFNGGGDRVERVELSLDGGKTWRYCFRRFTESPLRHGD-----KYWAWIFWNL 507
                  678999****************9988889*****************************************99987.....9*******86 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4.7e-06
                  H--TT-------EEEE CS
  Mo-co_dimer 119 iwnvlgmlnnawfrvk 134
                   wn++gm+nnaw+rv+
   CDO69334.1 504 FWNLMGMMNNAWYRVR 519
                  7*************96 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   3.6e+03      52      81 ..     146     181 ..     136     195 .. 0.68
   2 ?   -3.4   0.0       4.3   1.5e+04      59      87 ..     237     265 ..     210     274 .. 0.55
   3 !   76.8   0.0   5.1e-25   1.8e-21       1     107 [.     721     830 ..     721     832 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
                    HCTTEEEEEEE......ESSCTTTSSSEESSHHHHH CS
  NAD_binding_1  52 klpgrlkvvav......vsreeagweggkgrvqdal 81 
                    ++p+++ + ++      ++ +e++w g+k  v+d+l
     CDO69334.1 146 RHPRNHAFARYvlpvaeSEIKEQNWPGQKTAVDDSL 181
                    555533333333455767778999******999987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
                    EEEEESSCTTTSSSEESSHHHHHHHHHHH CS
  NAD_binding_1  59 vvavvsreeagweggkgrvqdalleells 87 
                     v+  ++++  ++g+   ++++ le+l+s
     CDO69334.1 237 TVESFKNNPGHPKGELQLLDEEALEQLES 265
                    33335666677777777777777777766 PP

  == domain 3  score: 76.8 bits;  conditional E-value: 5.1e-25
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE...ESSCTTTSSSEESSHHHHHHHHHHHHSSTTE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav...vsreeagweggkgrvqdalleellslkkeet 93 
                    +iagG+G++P +++++ail +++d+t + l+  nr+ ed+l+reel+++++++ +r+k+++v      ++ + + ++gr++++++ee+    +e++
     CDO69334.1 721 LIAGGSGLTPHWQLIHAILTDNTDQTVISLIDSNRSFEDILMREELQKYSETHADRFKLWHVignPPPDQPTFKCSNGRLSQHIMEEHFYPADEGV 816
                    7********************99***************************************9988888899999**************989**** PP

                    EEEEECSHHHHHHH CS
  NAD_binding_1  94 hvyvCGppgMikav 107
                     +++CGppg+i+ +
     CDO69334.1 817 AAFLCGPPGLIEKA 830
                    **********9976 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.3e-17   4.6e-14       1      59 [.     570     630 ..     570     660 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.3e-17
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTS...BBHHHHHHTTGGCH CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGk...Dateafksvvhsek 59 
                 +lee++khn+k+d+w+++++kVYDv++ ls hpGg+ ail+yaGk   D+t++   + h++ 
  CDO69334.1 570 SLEEIAKHNTKDDAWLILDNKVYDVTSVLSWHPGGANAILAYAGKatvDVTNEYRGI-HDNY 630
                 589*****************************************9666666666666.7665 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.3e-05      0.19       1      59 [.     716     769 ..     716     783 .. 0.81
   2 ?    2.8   0.0     0.031   1.1e+02     125     151 ..     804     830 ..     791     832 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLnel 59 
                    ++ + l+agG+G+tp   ++  +l        +++ i+li ++r+ +++ + +  L++ 
     CDO69334.1 716 FDKINLIAGGSGLTPHWQLIHAILTDNT----DQTVISLIDSNRSFEDILMRE-ELQKY 769
                    68899*************9999887776....999*********999997766.44444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.031
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 125 lkdiaskhknssvgvfvCGppklvkev 151
                    + +++    ++ v+ f CGpp+l+++ 
     CDO69334.1 804 IMEEHFYPADEGVAAFLCGPPGLIEKA 830
                    555556677888999********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5546.10
//
Query:       CDO69335.1  [L=1017]
Description: hypothetical protein BN946_scf184746.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-14   53.4  25.1    0.00013   22.4   0.1    9.1  9  TPR_19           Tetratricopeptide repeat
    2.5e-10   39.7  16.2       0.79   10.1   0.0   10.1 10  TPR_8            Tetratricopeptide repeat
    1.5e-09   38.3  28.4     0.0055   17.3   0.0    8.4  8  TPR_16           Tetratricopeptide repeat
    1.5e-08   34.8  29.3    0.00012   22.2   0.6    9.3  9  TPR_12           Tetratricopeptide repeat
      3e-07   30.0  31.2       0.63   10.3   0.0   10.7 12  TPR_2            Tetratricopeptide repeat
    4.2e-07   29.9   2.5        4.1    8.0   0.0    6.8  6  TPR_17           Tetratricopeptide repeat
      2e-06   27.4  15.2        1.3    9.2   0.0    7.9  7  TPR_7            Tetratricopeptide repeat
    2.4e-06   28.0   1.8     0.0057   17.1   0.0    4.2  3  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
    4.9e-06   26.1  16.9        5.4    7.0   0.1    8.5  8  TPR_1            Tetratricopeptide repeat
      4e-05   24.1  37.3       0.16   12.8   0.1   11.5 10  TPR_14           Tetratricopeptide repeat
     0.0091   16.3   8.1       0.25   11.7   0.2    5.6  5  TPR_20           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.032   13.7   0.4      0.032   13.7   0.4    2.5  3  SNAP             Soluble NSF attachment protein, SNAP
      0.038   14.2  17.5        3.4    8.0   0.1    7.0  8  ANAPC3           Anaphase-promoting complex, cyclosome, subun
        0.1   12.8   0.0        0.1   12.8   0.0    5.9  7  TPR_9            Tetratricopeptide repeat
        0.2   12.3  17.0       0.75   10.6   0.0    8.3  9  TPR_6            Tetratricopeptide repeat
       0.26   10.1   0.0       0.26   10.1   0.0    3.7  5  NARP1            NMDA receptor-regulated protein 1
        0.4   10.4  15.0        2.4    7.9   0.1    6.4  8  TPR_11           TPR repeat
        1.9    8.8   5.1       0.43   10.9   0.5    2.3  2  DUF4680          Domain of unknown function (DUF4680)
        6.3    7.4   6.2       0.33   11.5   0.2    1.9  1  TPPII_N          Tripeptidyl peptidase II N terminal


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.6   0.00021       0.2       7      47 ..     158     203 ..     152     222 .. 0.76
   2 ?    6.6   0.0     0.012        11       8      57 ..     231     280 ..     228     289 .. 0.90
   3 ?    1.9   0.0      0.34   3.2e+02      29      49 ..     341     361 ..     339     373 .. 0.87
   4 ?    3.0   0.0      0.16   1.5e+02      21      43 ..     405     427 ..     399     429 .. 0.88
   5 ?    0.4   0.1         1   9.7e+02      23      66 ..     442     485 ..     433     486 .. 0.83
   6 !   22.4   0.1   1.4e-07   0.00013       5      56 ..     493     544 ..     490     549 .. 0.92
   7 ?    4.7   0.0     0.045        42       4      41 ..     706     748 ..     703     766 .. 0.78
   8 !   11.4   0.4   0.00037      0.35       1      34 [.     871     904 ..     871     906 .. 0.94
   9 ?   -2.5   0.1         8   7.6e+03      24      47 ..     987    1010 ..     959    1014 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
      TPR_19   7 yaeA.....lalleqalqedpknaearllLAeallalgqldeAeal 47 
                 y +A     ++++++++  +p  a+a+  LA+++  lg+  +A +l
  CDO69335.1 158 YVDAnipetIRIMQEVIRIEPRAAAAWSVLAQCYDDLGERGKALQL 203
                 55555555599********************************986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.012
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++Al  + +++  dp n +a+ + A +  + g+l+ A+ ++ a ++  p 
  CDO69335.1 231 QQALYCYGKIYHLDPTNINALWDRASLAKEIGDLKTARSTMLAMLKRLPH 280
                 799999**********************************9999888776 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.34
      TPR_19  29 llLAeallalgqldeAealLd 49 
                 l LA+++  lg++ +A++++ 
  CDO69335.1 341 LVLADLYNTLGEYGKAIDVIR 361
                 679*************99875 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.16
      TPR_19  21 dpknaearllLAeallalgqlde 43 
                 +p + +ar +LA+a +++g+++e
  CDO69335.1 405 YPLDVNARHRLAIARIKSGEIEE 427
                 6678999**************98 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 1
      TPR_19  23 knaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 ++a +    A+a+++   + eA  + + l+ ++  ++ y  L+A
  CDO69335.1 442 EYAPLFSEIADAYFERELYSEAGHIYEMLGGDAGTSSMYVLLQA 485
                 677788889*************9999999999998888888887 PP

  == domain 6  score: 22.4 bits;  conditional E-value: 1.4e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 gd+ eA++ +e ++q+dp + ea++ LAe++  l+++ +A +l+ ++ ++ +
  CDO69335.1 493 GDLKEAAEVYEHVIQADPSHNEAKMKLAEIYEILNEPRKALDLVLQVIDSRK 544
                 9*****************************************9998887765 PP

  == domain 7  score: 4.7 bits;  conditional E-value: 0.045
      TPR_19   4 egdyaeA.....lalleqalqedpknaearllLAeallalgql 41 
                 +g+y+ A     + l+++a+q    ++ +rl+L+ + + + q+
  CDO69335.1 706 RGQYELAnevlrHLLYSNAFQSRSSQDSIRLALITCAIHADQF 748
                 5777777555545567779999******************997 PP

  == domain 8  score: 11.4 bits;  conditional E-value: 0.00037
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAea 34 
                 lla++ y++Al +l qa++++p+++ + l LA+a
  CDO69335.1 871 LLAAKSYQSALFYLLQAYDYAPEDPLVCLCLAIA 904
                 79*************************9999876 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 8
      TPR_19   24 naearllLAeallalgqldeAeal 47  
                    ea+++L  +++++g    Aeal
  CDO69335.1  987 AREAAYNLSLIYVSTGSAPLAEAL 1010
                  456777777777777777666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.061        57       2      21 ..     182     201 ..     181     203 .. 0.87
   2 ?    0.7   0.0      0.88   8.3e+02       3      25 ..     250     272 ..     248     277 .. 0.85
   3 !   10.1   0.0   0.00083      0.79       6      29 ..     342     365 ..     340     366 .. 0.89
   4 ?   -1.3   0.1       3.7   3.5e+03       6      25 ..     449     468 ..     444     468 .. 0.74
   5 !    8.5   0.0    0.0026       2.5      15      34 .]     493     512 ..     481     512 .. 0.89
   6 ?    1.3   0.0      0.56   5.3e+02       3      29 ..     515     541 ..     514     545 .. 0.81
   7 ?   -0.8   0.0       2.5   2.4e+03      10      31 ..     702     723 ..     698     725 .. 0.81
   8 ?    6.5   0.5     0.012        11       7      34 .]     867     894 ..     865     894 .. 0.93
   9 ?    4.7   0.0     0.046        43       5      32 ..     947     974 ..     945     976 .. 0.93
  10 ?    2.9   0.0      0.17   1.6e+02       3      26 ..     990    1013 ..     989    1017 .] 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.061
                 CHHHHHHHHHHHTT-HHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAk 21 
                  a+  l+++y++lg+  +A 
  CDO69335.1 182 AAWSVLAQCYDDLGERGKAL 201
                 68999*********999885 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyye 25 
                 a++  +s+ ++ gd++ A +++ 
  CDO69335.1 250 ALWDRASLAKEIGDLKTARSTML 272
                 78899*************98875 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00083
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                  l+++y +lg+y +A+ +++k ++
  CDO69335.1 342 VLADLYNTLGEYGKAIDVIRKGCR 365
                 69*****************99765 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 3.7
                 HHHHHHHHTT-HHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyye 25 
                  ++++y++ + y eA   ye
  CDO69335.1 449 EIADAYFERELYSEAGHIYE 468
                 68899999888888876665 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0026
                 T-HHHHHHHHHHHHHHHHH. CS
       TPR_8  15 gdyeeAkeyyekaleldpdn 34 
                 gd++eA e+ye+++++dp++
  CDO69335.1 493 GDLKEAAEVYEHVIQADPSH 512
                 9*****************86 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 a ++l+ iy+ l++  +A     ++++
  CDO69335.1 515 AKMKLAEIYEILNEPRKALDLVLQVID 541
                 6689**********9999877777665 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 2.5
                 HHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekaleld 31 
                 ++   g+ye A e++++ l+ +
  CDO69335.1 702 LLTRRGQYELANEVLRHLLYSN 723
                 566789********99998765 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.012
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpdn 34 
                  g+i+l  + y++A  y+ +a +++p++
  CDO69335.1 867 YGQILLAAKSYQSALFYLLQAYDYAPED 894
                 699**********************985 PP

  == domain 9  score: 4.7 bits;  conditional E-value: 0.046
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldp 32 
                 yn g++ ++lg +  A+  y+++l++++
  CDO69335.1 947 YNFGRVFQQLGLHSLAVRHYQRVLDAAE 974
                 899*********************9876 PP

  == domain 10  score: 2.9 bits;  conditional E-value: 0.17
                  HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyyek 26  
                  a ynl++iy ++g    A++ y++
  CDO69335.1  990 AAYNLSLIYVSTGSAPLAEALYRR 1013
                  77***********99999999887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1    0.0017       1.6      20      55 ..     170     202 ..     153     211 .. 0.88
   2 ?    0.1   0.0       1.4   1.4e+03      36      65 ..     250     279 ..     230     281 .. 0.87
   3 ?    2.1   0.0      0.33   3.1e+02      36      59 ..     339     362 ..     331     367 .. 0.88
   4 ?    0.8   0.1      0.88   8.3e+02       3      53 ..     415     463 ..     413     471 .. 0.69
   5 !   17.3   0.0   5.8e-06    0.0055      11      61 ..     493     540 ..     492     545 .. 0.92
   6 ?   -2.5   0.0       9.3   8.8e+03       8      32 ..     596     617 ..     594     621 .. 0.85
   7 ?    4.7   0.1     0.052        49       4      31 ..     868     895 ..     866     910 .. 0.63
   8 !   16.4   1.7   1.1e-05     0.011       1      61 [.     947    1015 ..     947    1017 .] 0.94

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0017
      TPR_16  20 leaalkrdpssPdaaeAllllgdaalrqgrlaeAaa 55 
                  +++++     P+aa+A+  l++++  +g+  +A++
  CDO69335.1 170 MQEVIRIE---PRAAAAWSVLAQCYDDLGERGKALQ 202
                 57788889...*******************999986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.4
      TPR_16  36 AllllgdaalrqgrlaeAaalyraalraap 65 
                 Al+ ++ +a + g+l+ A+   +a+l+  p
  CDO69335.1 250 ALWDRASLAKEIGDLKTARSTMLAMLKRLP 279
                 9999***************99999998877 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.33
      TPR_16  36 AllllgdaalrqgrlaeAaalyra 59 
                  ll l+d++  +g++ +A++++r+
  CDO69335.1 339 HLLVLADLYNTLGEYGKAIDVIRK 362
                 5789***************99886 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.88
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 la a++++g+ ++    ++++l++d+++   a    + +da++++  + eA
  CDO69335.1 415 LAIARIKSGEIEEGKMHARIVLAQDAVE--YAPLFSEIADAYFERELYSEA 463
                 5666777777777777777777777544..666677777788877777777 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 5.8e-06
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 gd  +Aa+++e ++ +d   P + eA + l++++  +++  +A++l++  +
  CDO69335.1 493 GDLKEAAEVYEHVIQAD---PSHNEAKMKLAEIYEILNEPRKALDLVLQVI 540
                 8999*************...************************9887655 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 9.3
      TPR_16   8 lragdyddAaaaleaalkrdpssPd 32 
                 l+a++ ++A+  ++++ +++   P+
  CDO69335.1 596 LEAQKEREAVQSWHRVQELW---PR 617
                 6888999*********9999...64 PP

  == domain 7  score: 4.7 bits;  conditional E-value: 0.052
      TPR_16   4 araalragdyddAaaaleaalkrdpssP 31 
                 ++++l+a+ y+ A+ +l +a +++p++P
  CDO69335.1 868 GQILLAAKSYQSALFYLLQAYDYAPEDP 895
                 4556666666666666666666666666 PP

  == domain 8  score: 16.4 bits;  conditional E-value: 1.1e-05
      TPR_16    1 lalaraalragdyddAaaaleaalkrdpssPd........aaeAllllgdaalrqgrlaeAaalyraal 61  
                  ++ +r + ++g    A++ ++++l+++   P         a+eA+++l +++   g  ++A+alyr++l
  CDO69335.1  947 YNFGRVFQQLGLHSLAVRHYQRVLDAAEARPKtdgedcglAREAAYNLSLIYVSTGSAPLAEALYRRWL 1015
                  6889999********************77777***********************************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.049        46      42      67 ..     178     203 ..     166     204 .. 0.89
   2 ?   -1.2   0.1       2.7   2.5e+03      27      65 ..     231     268 ..     216     271 .. 0.71
   3 ?    4.7   0.0     0.038        36      47      70 ..     339     362 ..     332     368 .. 0.79
   4 !    9.2   0.2    0.0016       1.5      25      75 ..     459     509 ..     443     511 .. 0.79
   5 ?    1.8   0.0      0.31   2.9e+02      51      75 ..     519     543 ..     513     553 .. 0.73
   6 ?    0.9   0.1      0.61   5.7e+02       8      28 ..     698     718 ..     690     722 .. 0.74
   7 ?    2.4   0.5       0.2   1.9e+02      51      75 ..     867     891 ..     865     893 .. 0.88
   8 !   18.4   0.2     2e-06    0.0019      30      76 ..     928     974 ..     923     975 .. 0.94
   9 !   22.2   0.6   1.3e-07   0.00012       5      70 ..     945    1013 ..     941    1017 .] 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.049
      TPR_12  42 pltattlrnLgrlyralgryeeAlel 67 
                 p +a++   L+++y+ lg+  +Al+l
  CDO69335.1 178 PRAAAAWSVLAQCYDDLGERGKALQL 203
                 56899999***************985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.7
      TPR_12  27 ekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                 ++al  + +++ +  p  +++l + + l  + g+++ A+
  CDO69335.1 231 QQALYCYGKIY-HLDPTNINALWDRASLAKEIGDLKTAR 268
                 45555554554.445667889999999999999999887 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
      TPR_12  47 tlrnLgrlyralgryeeAlellee 70 
                  l  L++ly  lg+y +A++  ++
  CDO69335.1 339 HLLVLADLYNTLGEYGKAIDVIRK 362
                 577899999999999999987666 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0016
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 l+ +a  i++ l G+       +l   + + r+ g+++eA e +e++++++
  CDO69335.1 459 LYSEAGHIYEMLGGDAGTSSMYVLLQAASCRRMVGDLKEAAEVYEHVIQAD 509
                 4444444566668888888888999999999999************99876 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.31
      TPR_12  51 LgrlyralgryeeAlelleealaia 75 
                 L+++y+ l+++++Al+l  ++++ +
  CDO69335.1 519 LAEIYEILNEPRKALDLVLQVIDSR 543
                 6777777777777777777766654 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.61
      TPR_12   8 nlaavlrrlgrydeAlellek 28 
                  +a +l+r+g+y+ A e l++
  CDO69335.1 698 TYAFLLTRRGQYELANEVLRH 718
                 578889999999988766665 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.2
      TPR_12  51 LgrlyralgryeeAlelleealaia 75 
                 +g++++a++ y+ Al +l +a++ a
  CDO69335.1 867 YGQILLAAKSYQSALFYLLQAYDYA 891
                 699999***************9976 PP

  == domain 8  score: 18.4 bits;  conditional E-value: 2e-06
      TPR_12  30 leiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 l ++r+l G+  +++ ++ +n gr++++lg +  A+++++++l++ae
  CDO69335.1 928 LTRYRELRGESAEGVDEVEYNFGRVFQQLGLHSLAVRHYQRVLDAAE 974
                 67899***************************************998 PP

  == domain 9  score: 22.2 bits;  conditional E-value: 1.3e-07
      TPR_12    5 alnnlaavlrrlgrydeAlellekaleiar...rllGpdhpltattlrnLgrlyralgryeeAlellee 70  
                  + +n + v ++lg +  A ++++++l++a+   ++ G+d  l+ ++ +nL+ +y  +g    A++l+++
  CDO69335.1  945 VEYNFGRVFQQLGLHSLAVRHYQRVLDAAEarpKTDGEDCGLAREAAYNLSLIYVSTGSAPLAEALYRR 1013
                  67899************************83333578899999************************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2     0.017        16       1      22 [.     181     202 ..     181     203 .. 0.93
   2 !    9.2   0.3    0.0015       1.4       1      34 []     214     247 ..     214     247 .. 0.95
   3 ?   -1.7   0.0       4.8   4.5e+03       3      33 ..     250     280 ..     249     281 .. 0.85
   4 ?    0.5   0.0      0.92   8.7e+02       7      27 ..     343     363 ..     340     366 .. 0.79
   5 ?   -2.3   0.0       7.3   6.9e+03       4      19 ..     412     427 ..     410     429 .. 0.86
   6 ?   -0.4   0.1       1.7   1.6e+03       4      22 ..     447     465 ..     444     470 .. 0.79
   7 !   10.3   0.0   0.00067      0.63       6      34 .]     484     512 ..     480     512 .. 0.85
   8 ?    3.3   0.0      0.11   1.1e+02       2      28 ..     514     540 ..     513     543 .. 0.86
   9 ?   -0.1   0.1       1.4   1.3e+03       8      27 ..     700     719 ..     697     722 .. 0.83
  10 !    8.2   0.8    0.0032         3       8      34 .]     868     894 ..     866     894 .. 0.94
  11 ?    3.8   0.1     0.083        78       5      29 ..     947     971 ..     944     975 .. 0.88
  12 ?   -0.7   0.1       2.2     2e+03       2      26 ..     989    1013 ..     989    1017 .] 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.017
       TPR_2   1 aealynlGlayyklgdyeeAle 22 
                 a a+  l+++y  lg+  +Al+
  CDO69335.1 181 AAAWSVLAQCYDDLGERGKALQ 202
                 689*****************96 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0015
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+ + +l++  + lg  ++Al ++ k   ldP+n
  CDO69335.1 214 ADEWAELAQHSRTLGYNQQALYCYGKIYHLDPTN 247
                 67899***************************98 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.8
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al+ ++ ++ + gd++ A+  + + l+  P+
  CDO69335.1 250 ALWDRASLAKEIGDLKTARSTMLAMLKRLPH 280
                 788899999999******9999998888887 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.92
       TPR_2   7 lGlayyklgdyeeAleafekA 27 
                 l+++y  lg+y +A++  +k 
  CDO69335.1 343 LADLYNTLGEYGKAIDVIRKG 363
                 56666679*******998875 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 7.3
       TPR_2   4 lynlGlayyklgdyee 19 
                  ++l+ a +k+g+ ee
  CDO69335.1 412 RHRLAIARIKSGEIEE 427
                 589*********9998 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.7
       TPR_2   4 lynlGlayyklgdyeeAle 22 
                   ++++ay+++  y eA +
  CDO69335.1 447 FSEIADAYFERELYSEAGH 465
                 5678999**9999999955 PP

  == domain 7  score: 10.3 bits;  conditional E-value: 0.00067
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 + + + +  gd++eA+e +e +++ dP +
  CDO69335.1 484 QAASCRRMVGDLKEAAEVYEHVIQADPSH 512
                 567778889******************86 PP

  == domain 8  score: 3.3 bits;  conditional E-value: 0.11
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 ea + l+++y+ l+++ +Al++  +++
  CDO69335.1 514 EAKMKLAEIYEILNEPRKALDLVLQVI 540
                 67789***************9877765 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 1.4
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 + ++ ++g+ye A e ++  
  CDO69335.1 700 AFLLTRRGQYELANEVLRHL 719
                 778899*******9988766 PP

  == domain 10  score: 8.2 bits;  conditional E-value: 0.0032
       TPR_2   8 GlayyklgdyeeAleafekAleldPnn 34 
                 G+++++++ y+ Al ++ +A  ++P++
  CDO69335.1 868 GQILLAAKSYQSALFYLLQAYDYAPED 894
                 99***********************86 PP

  == domain 11  score: 3.8 bits;  conditional E-value: 0.083
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 yn G++  +lg +  A+++++++l 
  CDO69335.1 947 YNFGRVFQQLGLHSLAVRHYQRVLD 971
                 7779999***************997 PP

  == domain 12  score: -0.7 bits;  conditional E-value: 2.2
       TPR_2    2 ealynlGlayyklgdyeeAleafek 26  
                  ea ynl l+y   g    A++++++
  CDO69335.1  989 EAAYNLSLIYVSTGSAPLAEALYRR 1013
                  6789999999999988888888886 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0044       4.1       3      34 .]     171     202 ..     169     202 .. 0.91
   2 !    7.1   0.1    0.0082       7.7       7      33 ..     242     268 ..     233     269 .. 0.89
   3 ?    0.1   0.0       1.4   1.3e+03      18      33 ..     342     357 ..     338     358 .. 0.80
   4 ?    0.9   0.0       0.8   7.5e+02       9      30 ..     405     426 ..     404     430 .. 0.86
   5 ?    5.3   0.0     0.032        31       2      33 ..     502     533 ..     501     534 .. 0.94
   6 ?   -0.9   0.1       3.1   2.9e+03      19      32 ..     699     712 ..     693     712 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0044
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +++++++P  a a+  LA+++  +G+ ++A+q
  CDO69335.1 171 QEVIRIEPRAAAAWSVLAQCYDDLGERGKALQ 202
                 789**********************9888876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0082
      TPR_17   7 eldPnnadaynnLAelllknGdlmtAr 33 
                  ldP+n +a+  +A l +++Gdl+tAr
  CDO69335.1 242 HLDPTNINALWDRASLAKEIGDLKTAR 268
                 579***********************8 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.4
      TPR_17  18 nLAelllknGdlmtAr 33 
                  LA l+  +G++++A+
  CDO69335.1 342 VLADLYNTLGEYGKAI 357
                 6899999999999986 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.8
      TPR_17   9 dPnnadaynnLAelllknGdlm 30 
                 +P +++a + LA +  k G+ +
  CDO69335.1 405 YPLDVNARHRLAIARIKSGEIE 426
                 699**********999988765 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.032
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y+ +++ dP++ +a   LAe+++ ++++++A+
  CDO69335.1 502 YEHVIQADPSHNEAKMKLAEIYEILNEPRKAL 533
                 999*************************9996 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 3.1
      TPR_17  19 LAelllknGdlmtA 32 
                 +A ll ++G+++ A
  CDO69335.1 699 YAFLLTRRGQYELA 712
                 899999****9876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.013        13       1      24 [.     183     206 ..     183     216 .. 0.82
   2 ?   -1.2   0.0         3   2.8e+03       5      24 ..     220     239 ..     217     249 .. 0.71
   3 ?    5.3   0.0     0.024        23       2      24 ..     340     362 ..     340     364 .. 0.88
   4 ?    0.7   0.1      0.73   6.9e+02       3      24 ..     448     469 ..     446     474 .. 0.85
   5 !    9.2   0.0    0.0014       1.3       3      34 ..     483     512 ..     480     514 .. 0.74
   6 ?    0.8   0.0      0.68   6.4e+02       5      29 ..     519     543 ..     518     550 .. 0.80
   7 !    7.4   0.0    0.0053         5       6      28 ..     950     973 ..     947     980 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 a++ La++y +lG++ +A++l   
  CDO69335.1 183 AWSVLAQCYDDLGERGKALQLRIM 206
                 5677***************99876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 La+  + lG+ ++A+ +y +
  CDO69335.1 220 LAQHSRTLGYNQQALYCYGK 239
                 55555559999***999987 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.024
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 Ll La+ly  lG+y +Ai++ ++
  CDO69335.1 340 LLVLADLYNTLGEYGKAIDVIRK 362
                 5679**************98765 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.73
       TPR_7   3 lnLarlysrlGdyeeAielyeq 24 
                 + +a++y+++  y+eA  +ye 
  CDO69335.1 448 SEIADAYFERELYSEAGHIYEM 469
                 568999*999999999888885 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0014
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 l+ a++++ +Gd +eA+e+ye   ++  dp++
  CDO69335.1 483 LQAASCRRMVGDLKEAAEVYEH--VIQADPSH 512
                 444555555*************..87777766 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.68
       TPR_7   5 LarlysrlGdyeeAielyeqsLalt 29 
                 La++y+ l++ ++A++l  q++  +
  CDO69335.1 519 LAEIYEILNEPRKALDLVLQVIDSR 543
                 899*************999944444 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0053
       TPR_7   6 arlysrlGdyeeAielyeqsL.al 28 
                 +r++++lG ++ A+++y+++L a 
  CDO69335.1 950 GRVFQQLGLHSLAVRHYQRVLdAA 973
                 89*****************87443 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.042        40      72     126 ..     150     204 ..     131     252 .. 0.89
   2 !   17.1   0.0     6e-06    0.0057      61     117 ..     465     527 ..     447     533 .. 0.81
   3 ?    2.4   0.1      0.21     2e+02      81     102 ..     705     726 ..     695     783 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.042
                      HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH-SSHHHH CS
  Alkyl_sulf_dimr  72 vlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqaesatwR 126
                      ++ + ++a+ + ++   + +++ ++  +p+ a+a +++a++++ lg++ ++ + R
       CDO69335.1 150 LIGEGNQAYVDANIPETIRIMQEVIRIEPRAAAAWSVLAQCYDDLGERGKALQLR 204
                      55666777777777788899**************************998887776 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 6e-06
                      HHHHHTT......SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  61 rlvelmG......gaekvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlg 117
                      ++ e++G      +   +l++a+  +  gd++ aae+ +h+++adp+++eak  +a+++e l 
       CDO69335.1 465 HIYEMLGgdagtsSMYVLLQAASCRRMVGDLKEAAEVYEHVIQADPSHNEAKMKLAEIYEILN 527
                      5556666444333455678888888899*******************************9876 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.21
                      HTT-HHHHHHHHHHHHHHSTT- CS
  Alkyl_sulf_dimr  81 kegdyrwaaellnhlvfadpen 102
                      ++g+y++a e+l hl++++  +
       CDO69335.1 705 RRGQYELANEVLRHLLYSNAFQ 726
                      6788999999999999864432 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0057       5.4       1      22 [.     181     202 ..     181     203 .. 0.93
   2 ?    1.9   0.1      0.24   2.3e+02      18      34 .]     231     247 ..     214     247 .. 0.84
   3 ?    4.2   0.0     0.043        40       7      22 ..     343     358 ..     340     363 .. 0.86
   4 ?   -0.3   0.0       1.2   1.1e+03       4      20 ..     447     463 ..     444     469 .. 0.82
   5 ?    6.0   0.0     0.012        11      10      34 .]     488     512 ..     481     512 .. 0.87
   6 ?    2.5   0.0      0.15   1.4e+02       5      22 ..     517     534 ..     514     541 .. 0.86
   7 ?   -0.1   0.8         1   9.7e+02       8      33 ..     868     893 ..     868     894 .. 0.84
   8 !    6.9   0.0    0.0061       5.8       5      29 ..     947     971 ..     944     974 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0057
                 HHHHHHHHHHHHHTT-HHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAle 22 
                 a a+  l+++y  lg+  +Al+
  CDO69335.1 181 AAAWSVLAQCYDDLGERGKALQ 202
                 78**************999997 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHSTTH CS
       TPR_1  18 deAleyyekALelnPnn 34 
                 ++Al +y k   l+P+n
  CDO69335.1 231 QQALYCYGKIYHLDPTN 247
                 79*************97 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.043
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 l+ +y  lg+y +A++
  CDO69335.1 343 LADLYNTLGEYGKAID 358
                 8999***********8 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHTT-HHHH CS
       TPR_1   4 lynlGnayfklgkydeA 20 
                 +  ++ ayf+ + y eA
  CDO69335.1 447 FSEIADAYFERELYSEA 463
                 667899********999 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.012
                 HHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  10 ayfklgkydeAleyyekALelnPnn 34 
                 + +  g+++eA e ye +++ +P++
  CDO69335.1 488 CRRMVGDLKEAAEVYEHVIQADPSH 512
                 566779*****************86 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.15
                 HHHHHHHHHTT-HHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAle 22 
                   l+ +y  l+++ +Al+
  CDO69335.1 517 MKLAEIYEILNEPRKALD 534
                 679*************98 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 G++++  + y+ Al y  +A    P+
  CDO69335.1 868 GQILLAAKSYQSALFYLLQAYDYAPE 893
                 789999999*****999999777765 PP

  == domain 8  score: 6.9 bits;  conditional E-value: 0.0061
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 yn G ++++lg +  A+ +y+++L 
  CDO69335.1 947 YNFGRVFQQLGLHSLAVRHYQRVLD 971
                 5558899***************996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.13   1.2e+02      21      44 .]     167     190 ..     161     190 .. 0.89
   2 ?    4.0   0.1      0.12   1.2e+02       2      37 ..     249     284 ..     248     288 .. 0.89
   3 ?    6.2   0.0     0.023        22       5      29 ..     341     365 ..     339     378 .. 0.87
   4 ?    1.6   0.1      0.72   6.8e+02       2      31 ..     410     439 ..     409     456 .. 0.89
   5 !   12.8   0.1   0.00017      0.16       5      43 ..     483     521 ..     480     522 .. 0.84
   6 ?    5.1   0.0     0.052        49       2      28 ..     514     540 ..     513     547 .. 0.88
   7 ?   -0.4   0.2       3.2     3e+03       7      25 ..     699     717 ..     696     720 .. 0.84
   8 !    7.4   0.2    0.0093       8.8       6      42 ..     866     902 ..     863     904 .. 0.94
   9 ?    4.2   0.0       0.1        95       8      33 ..     950     975 ..     944     980 .. 0.87
  10 ?    1.1   0.1         1   9.6e+02       2      29 ..     989    1016 ..     988    1017 .] 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.13
      TPR_14  21 iallrralalaPddaeawlllaql 44 
                 i++ +++++  P  a+aw  laq+
  CDO69335.1 167 IRIMQEVIRIEPRAAAAWSVLAQC 190
                 788899****************96 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 +al+++a++  + Gd+++A+    ++l++ P ++ +
  CDO69335.1 249 NALWDRASLAKEIGDLKTARSTMLAMLKRLPHHLPV 284
                 6999************************99988755 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.023
      TPR_14   5 lalaeallalGdpdeAiallrrala 29 
                 l la+++ +lG++ +Ai++ r+ ++
  CDO69335.1 341 LVLADLYNTLGEYGKAIDVIRKGCR 365
                 779*****************99865 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.72
      TPR_14   2 eallalaeallalGdpdeAiallrralala 31 
                 +a+ +la a   +G+ +e   ++r +la++
  CDO69335.1 410 NARHRLAIARIKSGEIEEGKMHARIVLAQD 439
                 7999**************999999999875 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 0.00017
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l++a+  +  Gd++eA+++++ +++++P++ ea + la+
  CDO69335.1 483 LQAASCRRMVGDLKEAAEVYEHVIQADPSHNEAKMKLAE 521
                 4455555557***************************98 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.052
      TPR_14   2 eallalaeallalGdpdeAiallrral 28 
                 ea ++lae+++ l +p++A++l  +++
  CDO69335.1 514 EAKMKLAEIYEILNEPRKALDLVLQVI 540
                 68899***************9987766 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 3.2
      TPR_14   7 laeallalGdpdeAiallr 25 
                 +a +l ++G+++ A ++lr
  CDO69335.1 699 YAFLLTRRGQYELANEVLR 717
                 788999******9999998 PP

  == domain 8  score: 7.4 bits;  conditional E-value: 0.0093
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawllla 42 
                  ++++lla+  ++ A+ +l +a + aP+d+ + l la
  CDO69335.1 866 VYGQILLAAKSYQSALFYLLQAYDYAPEDPLVCLCLA 902
                 589******************************9998 PP

  == domain 9  score: 4.2 bits;  conditional E-value: 0.1
      TPR_14   8 aeallalGdpdeAiallrralalaPd 33 
                 ++++ +lG +  A+++++r+l++a +
  CDO69335.1 950 GRVFQQLGLHSLAVRHYQRVLDAAEA 975
                 78999****************98765 PP

  == domain 10  score: 1.1 bits;  conditional E-value: 1
      TPR_14    2 eallalaeallalGdpdeAiallrrala 29  
                  ea + l  ++   G    A+al+rr+l+
  CDO69335.1  989 EAAYNLSLIYVSTGSAPLAEALYRRWLS 1016
                  677778888999999999********98 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.35   3.3e+02      18      51 ..     244     277 ..     240     293 .. 0.90
   2 ?    1.7   0.0      0.34   3.2e+02      19      41 ..     406     428 ..     399     440 .. 0.88
   3 !   11.7   0.2   0.00026      0.25      11      53 ..     502     544 ..     493     554 .. 0.85
   4 ?   -2.6   0.1       7.6   7.2e+03      23      66 ..     585     632 ..     571     639 .. 0.60
   5 ?   -1.0   0.1       2.4   2.3e+03      29      83 ..     700     757 ..     693     762 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.35
      TPR_20  18 npddldarldlAlallaagryeeAleqLleilkr 51 
                 +p++++a  d A +  + g+ + A + +l++lkr
  CDO69335.1 244 DPTNINALWDRASLAKEIGDLKTARSTMLAMLKR 277
                 7999999999999999999999999999999997 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.34
      TPR_20  19 pddldarldlAlallaagryeeA 41 
                 p d++ar+ lA a ++ g+ ee 
  CDO69335.1 406 PLDVNARHRLAIARIKSGEIEEG 428
                 88*****************9985 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00026
      TPR_20  11 leaalaanpddldarldlAlallaagryeeAleqLleilkrdr 53 
                  e  ++a+p+ ++a+++lA+ +   ++ ++Al++ l+++ + +
  CDO69335.1 502 YEHVIQADPSHNEAKMKLAEIYEILNEPRKALDLVLQVIDSRK 544
                 466789*******************************997655 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.6
      TPR_20  23 darldlAla.llaagryeeAle...qLleilkrdrkweddaarkqllk 66 
                 + rl +A++  l+a++++eA++   +  e+  r ++ ed+a+r+ l++
  CDO69335.1 585 QNRLTVAQLrELEAQKEREAVQswhRVQELWPRMLASEDEAMREWLVE 632
                 566666654245666666666511134455566666677777776665 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.4
      TPR_20  29 AlallaagryeeAleqLleilkrdrkw...eddaarkqllkifealgsqdplvakyRr 83 
                 A +l  +g+ye A e L ++l ++      ++d++r +l+     +++   +v+++R+
  CDO69335.1 700 AFLLTRRGQYELANEVLRHLLYSNAFQsrsSQDSIRLALITCAIHADQFRTVVEQARK 757
                 5567778888888776666665443333338899999999888888888888888886 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.8   3.6e+03      53      84 ..     179     210 ..     177     226 .. 0.76
   2 ?   13.7   0.4   3.3e-05     0.032     135     199 ..     457     523 ..     436     525 .. 0.82
   3 ?   -1.3   0.0       1.2   1.2e+03     152     182 ..     581     612 ..     575     643 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
        SNAP  53 eAgeaflkaAecqeklkekdeaanayveAakc 84 
                 +A++a+  +A+c+ +l+e+ +a +  + Aa+ 
  CDO69335.1 179 RAAAAWSVLAQCYDDLGERGKALQLRIMAAHL 210
                 58888888889988888888887777777665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHHTT..-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-TTTGGGHHHHH CS
        SNAP 135 ieaYekAaelyeqee..akalankcllkvAelsaelekyekAieiyekvakkslennllkysvkeyf 199
                  e Y +A+++ye+ +  a +++  +ll++A+     +++++A+e+ye+v+++  ++n  k+ + e++
  CDO69335.1 457 RELYSEAGHIYEMLGgdAGTSSMYVLLQAASCRRMVGDLKEAAEVYEHVIQADPSHNEAKMKLAEIY 523
                 588*********877336667777789999999999*****************99999999888776 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHTT.-HHHHHHHHHHHH CS
        SNAP 152 alankcllkvAelsaele.kyekAieiyekva 182
                 a+ n+ +l vA+l   ++ k  +A++ + +v 
  CDO69335.1 581 AKGNQNRLTVAQLRELEAqKEREAVQSWHRVQ 612
                 55566666777664433325666666666653 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.48   4.5e+02      44      76 ..     168     201 ..     158     205 .. 0.66
   2 ?   -2.3   0.0       5.6   5.3e+03      20      33 ..     228     241 ..     207     251 .. 0.56
   3 ?    1.4   0.0      0.39   3.7e+02      27      48 ..     341     362 ..     337     367 .. 0.74
   4 ?    8.0   0.1    0.0036       3.4      29      81 ..     450     504 ..     428     505 .. 0.88
   5 ?    6.1   0.0     0.014        13       4      49 ..     494     539 ..     491     547 .. 0.86
   6 ?    2.3   0.3      0.21     2e+02      21      52 ..     691     721 ..     674     729 .. 0.76
   7 ?   -1.2   0.1       2.6   2.5e+03      15      49 ..     724     758 ..     706     764 .. 0.59
   8 ?    5.6   0.1      0.02        19      22      63 ..     860     902 ..     850     908 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.48
                 HHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  44 ellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 ++ ++  +++++  +++ ++Aqc+ +L++  +A+
  CDO69335.1 168 RIMQEViRIEPRAAAAWSVLAQCYDDLGERGKAL 201
                 5556666666666677777777777776655554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.6
                 H--HHHHHHHHHHH CS
      ANAPC3  20 tespedayllAlcl 33 
                  ++ +++y +++ +
  CDO69335.1 228 GYNQQALYCYGKIY 241
                 44444455444444 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.39
                 HHHHHHHHHTT-HHHHHHHHHC CS
      ANAPC3  27 yllAlclylngqykrAyellrk 48 
                 + lA  +  +g+y +A++++rk
  CDO69335.1 341 LVLADLYNTLGEYGKAIDVIRK 362
                 4567777778888888887776 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0036
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT.T-HHHHHHHH-S CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkL.kkyeeAiaaLek 81 
                  A ++++++ y +A ++++ + + +++s  + +l A ++  + + ++eA  ++e+
  CDO69335.1 450 IADAYFERELYSEAGHIYEMLgGDAGTSSMYVLLQAASCRRMvGDLKEAAEVYEH 504
                 499******************99999999**********9888*******99986 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.014
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka 49 
                 ++k+A  ++e + +a++ ++e+ + lA+ +  +++  +A++l+ + 
  CDO69335.1 494 DLKEAAEVYEHVIQADPSHNEAKMKLAEIYEILNEPRKALDLVLQV 539
                 68899999999999999999999999**999999999999998877 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.21
                 --HHHHHHHHHHHHHTT-HHHHHHHHHCTSHH CS
      ANAPC3  21 espedayllAlclylngqykrAyellrkakln 52 
                 + +++a  +A  l ++gqy+ A e+lr + l+
  CDO69335.1 691 DQSYNADTYAFLLTRRGQYELANEVLRHL-LY 721
                 445566678999**************988.44 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2.6
                 HH.HHH--HHH..HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  15 llaaetesped..ayllAlclylngqykrAyellrka 49 
                 ++  +++s++d  +++l  c  ++ q+ +  e +rk+
  CDO69335.1 724 AF--QSRSSQDsiRLALITCAIHADQFRTVVEQARKL 758
                 22..333333323555778888888888888888887 PP

  == domain 8  score: 5.6 bits;  conditional E-value: 0.02
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHH CS
      ANAPC3  22 spedayllAlclylngqykrAyellrka.klnskslgcrylfA 63 
                 +p ++  +++ l+ ++ y++A+ +l +a + +++++ +++++A
  CDO69335.1 860 NPLNVAVYGQILLAAKSYQSALFYLLQAyDYAPEDPLVCLCLA 902
                 67778899*****************999888888886666666 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.84   7.9e+02      13      50 ..     165     202 ..     161     222 .. 0.82
   2 ?   12.8   0.0   0.00011       0.1      11      61 ..     230     280 ..     224     292 .. 0.88
   3 ?    1.8   0.2      0.29   2.7e+02      10      49 ..     494     533 ..     480     549 .. 0.76
   4 ?   -2.9   0.1       8.5     8e+03       3      16 ..     607     620 ..     606     622 .. 0.89
   5 ?   -1.1   0.1       2.3   2.1e+03      35      56 ..     699     720 ..     697     738 .. 0.77
   6 ?   -2.2   0.1       5.1   4.8e+03      37      63 ..     869     895 ..     867     898 .. 0.65
   7 ?    2.3   0.3      0.19   1.8e+02      36      64 ..     950     978 ..     947     991 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.84
       TPR_9  13 ralavverllllaPddpeerrdRGlllaqlGclsaAla 50 
                 +++++ + ++ + P+++  +   ++++  lG   +Al+
  CDO69335.1 165 ETIRIMQEVIRIEPRAAAAWSVLAQCYDDLGERGKALQ 202
                 67888899999999999999999999999999888875 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00011
       TPR_9  11 weralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 +++al ++  +  l+P  +  ++dR+ l  + G+l++A+  + a+l   p+
  CDO69335.1 230 NQQALYCYGKIYHLDPTNINALWDRASLAKEIGDLKTARSTMLAMLKRLPH 280
                 57899999999*****************************99999988773 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.29
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAl 49 
                 d  +a +v+e +++ +P + e  +  + +++ l+ +++Al
  CDO69335.1 494 DLKEAAEVYEHVIQADPSHNEAKMKLAEIYEILNEPRKAL 533
                 5566777777777777777777777777777777777776 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 8.5
       TPR_9   3 aiaireedwerala 16 
                 +++  +e w+r+la
  CDO69335.1 607 SWHRVQELWPRMLA 620
                 7999********97 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.3
       TPR_9  35 RGlllaqlGclsaAladLeayl 56 
                  ++ll ++G+++ A + L + l
  CDO69335.1 699 YAFLLTRRGQYELANEVLRHLL 720
                 5899********9999888866 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 5.1
       TPR_9  37 lllaqlGclsaAladLeaylalapdap 63 
                 ++l     ++ Al+ L ++ + ap++p
  CDO69335.1 869 QILLAAKSYQSALFYLLQAYDYAPEDP 895
                 555555567777777777777777776 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.19
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapd 64 
                 G++ +qlG  s A++  ++ l+ a+++p 
  CDO69335.1 950 GRVFQQLGLHSLAVRHYQRVLDAAEARPK 978
                 8999*****************99996654 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       5.3     5e+03      12      31 ..     160     178 ..     156     180 .. 0.77
   2 ?   -1.9   0.1       7.3   6.9e+03       6      21 ..     187     202 ..     187     203 .. 0.86
   3 ?   -0.4   0.0       2.4   2.3e+03       2      29 ..     250     277 ..     249     281 .. 0.79
   4 ?   -1.6   0.0       5.9   5.5e+03       6      26 ..     450     470 ..     449     471 .. 0.82
   5 ?   10.6   0.0   0.00079      0.75       1      32 [.     480     511 ..     480     512 .. 0.91
   6 ?   -1.8   0.0       6.8   6.4e+03       2      21 ..     515     534 ..     514     541 .. 0.76
   7 ?   -0.1   0.0       1.9   1.8e+03       9      31 ..     593     616 ..     588     617 .. 0.78
   8 ?    4.4   0.0     0.072        68       3      28 ..     946     971 ..     944     973 .. 0.89
   9 ?   -1.8   0.1       7.1   6.7e+03       1      25 [.     989    1013 ..     989    1013 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 5.3
                 HHHHHHHHHHHHHHHHHH-T CS
       TPR_6  12 klgdtdkAlealerlikeYP 31 
                  + +  + +++++++i+  P
  CDO69335.1 160 DA-NIPETIRIMQEVIRIEP 178
                 55.677899*******9887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAle 21 
                 la++y  lg+  kAl+
  CDO69335.1 187 LAQCYDDLGERGKALQ 202
                 79*****999999986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 Al+ +a + ++ gd  +A+ ++   +k+
  CDO69335.1 250 ALWDRASLAKEIGDLKTARSTMLAMLKR 277
                 8888999999988******987666665 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 5.9
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerl 26 
                 +a +y++   +++A  ++e l
  CDO69335.1 450 IADAYFERELYSEAGHIYEML 470
                 799999955999998888876 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPd 32 
                 ++l+++a ++r+ gd  +A e +e +i+  P 
  CDO69335.1 480 YVLLQAASCRRMVGDLKEAAEVYEHVIQADPS 511
                 689*********66*************99886 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 6.8
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAle 21 
                 A +kla+ y+ l++++kAl+
  CDO69335.1 515 AKMKLAEIYEILNEPRKALD 534
                 67899999996669999987 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.9
                 HHHH.HHHHHHHHHHHHHHHHH-T CS
       TPR_6   9 syrk.lgdtdkAlealerlikeYP 31 
                 +++  +++ ++A++ + r+ + +P
  CDO69335.1 593 LRELeAQKEREAVQSWHRVQELWP 616
                 5554366889********999888 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                  y+ ++ +++lg ++ A++ ++r+++
  CDO69335.1 946 EYNFGRVFQQLGLHSLAVRHYQRVLD 971
                 688899****99************97 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 7.1
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6    1 dAlyklalsyrklgdtdkAlealer 25  
                  +A y+l l y ++g +  A ++++r
  CDO69335.1  989 EAAYNLSLIYVSTGSAPLAEALYRR 1013
                  6889999999998788888888775 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00028      0.26     198     249 ..     220     271 ..     216     276 .. 0.96
   2 ?   -4.1   0.0       5.7   5.4e+03     195     216 ..     340     361 ..     337     362 .. 0.84
   3 ?    4.0   0.1      0.02        19     190     249 ..     477     536 ..     461     547 .. 0.86
   4 ?   -1.8   0.2       1.2   1.1e+03     409     483 ..     567     642 ..     530     655 .. 0.45
   5 ?   -0.9   0.1       0.6   5.7e+02      34     117 ..     689     776 ..     667     795 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
                 HHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHH CS
       NARP1 198 lAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevm 249
                 lAqh   lg  ++Al +  k  + +pt ++    +a + k  Gdlk+A ++m
  CDO69335.1 220 LAQHSRTLGYNQQALYCYGKIYHLDPTNINALWDRASLAKEIGDLKTARSTM 271
                 8***********************************************9998 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.7
                 HHHHHHHHHHHT-SHHHHHHHH CS
       NARP1 195 lyflAqhydklgsrekAleyid 216
                 l  lA  y+ lg++ kA+++i 
  CDO69335.1 340 LLVLADLYNTLGEYGKAIDVIR 361
                 5679999***********9996 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHH CS
       NARP1 190 allwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevm 249
                 + ++vl   A     +g+ ++A e+ ++ i+ +p+  e  +  a+i++   +++kA +++
  CDO69335.1 477 SSMYVLLQAASCRRMVGDLKEAAEVYEHVIQADPSHNEAKMKLAEIYEILNEPRKALDLV 536
                 457888888888889999999*************************99999999998765 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.2
                 HHHHHHH.HHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT-S-H....HHHHHHHHTTTGG CS
       NARP1 409 erkklrk.kakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkteep....LeeAlkflkpLlk 483
                 e+ k+r  kak   +k +++  + a+ ++     e+++++e  ++ +  +++ +  L+  +e+    L eA k+++ +++
  CDO69335.1 567 EESKVRGaKAKSTPAKGNQNRLTVAQLREL----EAQKEREAVQSWHRVQELWPRMLASEDEAmrewLVEAEKLVESFRE 642
                 333333223333333333333333333333....3333334444444445666666665555511115667777777665 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.6
                 ---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T.T-CHHHHHHHHHT.....SSS-HHHHHHHHHHTTTS-TT-SHHHHTHHHH- CS
       NARP1  34 ivDklavketkaelllkLgrkeeAeatyeaLlernp.enskYyeglekak...klskedeeallalydelaekyprsdaprRlpLdfl 117
                  +D+    +t a ll++ g++e A++++++Ll  n+ ++++ +++++ a+    +++++ + +++  ++l ++++ ++ p Rl L+ l
  CDO69335.1 689 SIDQSYNADTYAFLLTRRGQYELANEVLRHLLYSNAfQSRSSQDSIRLALitcAIHADQFRTVVEQARKLINTHQFNNEPIRLLLSSL 776
                 55666677888899999999**********9998862555666667767677778888888888888888888888899999888766 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.88   8.3e+02      18      39 ..     171     192 ..     171     195 .. 0.84
   2 ?    5.4   0.2     0.016        15       8      35 ..     228     255 ..     225     262 .. 0.86
   3 ?    0.2   0.0      0.65   6.2e+02       2      15 ..     345     358 ..     344     365 .. 0.83
   4 ?   -1.6   0.1       2.4   2.2e+03       6      35 ..     456     464 ..     451     471 .. 0.51
   5 ?    7.9   0.1    0.0025       2.4       8      38 ..     493     523 ..     492     525 .. 0.93
   6 ?   -2.3   0.0       3.9   3.7e+03       5      15 ..     704     714 ..     702     717 .. 0.76
   7 ?   -1.1   0.3       1.6   1.5e+03       1      35 [.     868     902 ..     868     904 .. 0.70
   8 ?   -0.6   0.0       1.2   1.1e+03       1      21 [.     950     970 ..     950     972 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.88
      TPR_11  18 kkAlkldPdnaeayynLGlayy 39 
                 ++ +++ P  a a++ L++ y 
  CDO69335.1 171 QEVIRIEPRAAAAWSVLAQCYD 192
                 689***********99998775 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLG 35 
                 G + +A+ +Y k   ldP+n +a++ ++
  CDO69335.1 228 GYNQQALYCYGKIYHLDPTNINALWDRA 255
                 66789*******************9987 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.65
      TPR_11   2 dayyeqGkyeeAie 15 
                 d+y  +G+y +Ai 
  CDO69335.1 345 DLYNTLGEYGKAID 358
                 789999******97 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.4
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 e+  y                     ++ G
  CDO69335.1 456 ERELY---------------------SEAG 464
                 55544.....................5555 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0025
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 G+++eA e+Y+  ++ dP+  ea  +L+++y
  CDO69335.1 493 GDLKEAAEVYEHVIQADPSHNEAKMKLAEIY 523
                 99*****************999999999888 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.9
      TPR_11   5 yeqGkyeeAie 15 
                 + +G+ye A e
  CDO69335.1 704 TRRGQYELANE 714
                 679****9855 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 1.6
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 G+++ +   y  A+  + +A ++ P+++ + ++L+
  CDO69335.1 868 GQILLAAKSYQSALFYLLQAYDYAPEDPLVCLCLA 902
                 66777777777777778888888888887666665 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 1.2
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 G+++ ++G    A+ +Y++ l
  CDO69335.1 950 GRVFQQLGLHSLAVRHYQRVL 970
                 778888999999******988 PP

>> DUF4680  Domain of unknown function (DUF4680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       3.8   3.6e+03      54      89 ..      52      84 ..      18      91 .. 0.56
   2 ?   10.9   0.5   0.00045      0.43      45     130 ..     550     630 ..     526     644 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.8
     DUF4680 54 aPdsassqrassarsatrqaaragliqknlakkfdf 89
                 P   s  +  +a+ a+ q a a   q ++a + df
  CDO69335.1 52 GP---SRSHEPRAQGAQSQDADAEEAQVEAAIEGDF 84
                22...2334455566666666666666666655554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00045
     DUF4680  45 tGsrarvpaaPdsassqrassarsatrqaaragliqknlakkfdfpipLneasklmkkkkkvsvWnrvykvisrmle.enekYrkrL 130
                  G+   ++  P sas    s++r a+ ++  a  +q  l+       +L+e     k++  v  W rv++   rml+ e+e  r+ L
  CDO69335.1 550 EGTTDATAGDPGSASLFEESKVRGAKAKSTPAKGNQNRLTVA-----QLREL-EAQKEREAVQSWHRVQELWPRMLAsEDEAMREWL 630
                 34444555558999999**********999999999988764.....66664.56899******************75788888765 PP

>> TPPII_N  Tripeptidyl peptidase II N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00035      0.33      90     121 ..     493     524 ..     483     538 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
                 S-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH CS
     TPPII_N  90 ldlenAekiYnevvaahPkHLaAhLlliqnie 121
                  dl +A ++Y++v++a+P H +A+++l++  e
  CDO69335.1 493 GDLKEAAEVYEHVIQADPSHNEAKMKLAEIYE 524
                 58999*********************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.97u 0.36s 00:00:01.33 Elapsed: 00:00:00.61
# Mc/sec: 5051.77
//
Query:       CDO69336.1  [L=306]
Description: hypothetical protein BN946_scf184746.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2013.26
//
Query:       CDO69337.1  [L=146]
Description: hypothetical protein BN946_scf184746.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-09   35.3   9.4    1.2e-08   34.8   9.4    1.3  1  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
       0.15   10.3   0.8       0.16   10.2   0.8    1.0  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   9.4   1.4e-12   1.2e-08      65     132 ..       4      79 ..       1      83 [. 0.93

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.4e-12
        PAP2  65 falalllalllrrkrkkig........lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvq 132
                 fa++l+l+++l+ ++  +g         vll++++l++a  va+sR+yl +H+  +vl+G+ iG+++++ +y +v+
  CDO69337.1   4 FASFLVLHFTLQHRFVSTGyrildyarDVLLYTFILTWAGAVAFSRYYLSYHTIAQVLWGFTIGVIFGTTYYVFVE 79 
                 8999999999999999999**************************************************9998876 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.8   1.8e-05      0.16      48     148 ..       8     106 ..       1     128 [. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 1.8e-05
     DUF2070  48 alvaflltlpvlrilggrltykrslflalltelivviisllaillsallqalvllalvlslalvfalrllvlvavsdesllkavlpaliqpllailllv 146
                 +++ f l ++++++  ++l+y r ++l  ++++ + ++ +  + ls+ +  +    + +++ ++f+ ++ v+v +  ++ + ++l  + + ll+ ++++
  CDO69337.1   8 LVLHFTLQHRFVSTGYRILDYARDVLLYTFILTWAGAVAFSRYYLSYHT--IAQVLWGFTIGVIFGTTYYVFVEYIPRRRPGSLLGRFRTALLINPVST 104
                 456677777777665555******9999999999999999999999855..77788999999**********************999999999999999 PP

     DUF2070 147 ly 148
                 ++
  CDO69337.1 105 WF 106
                 88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1031.20
//
Query:       CDO69338.1  [L=521]
Description: hypothetical protein BN946_scf184746.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-33  114.9  29.5    3.9e-33  114.9  29.5    1.6  2  MFS_1         Major Facilitator Superfamily
    0.00015   21.7   1.5      0.023   14.5   0.1    2.8  2  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr
  ------ inclusion threshold ------
       0.11   12.2   0.7       0.43   10.4   0.1    2.2  2  Vpu           Vpu protein
       0.21   12.2   0.2       0.37   11.5   0.2    1.3  1  Antistasin    Antistasin family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9  29.5   8.6e-37   3.9e-33       1     347 [.      77     426 ..      77     432 .. 0.81
   2 ?   -1.1   0.4      0.16     7e+02     298     320 ..     438     464 ..     414     479 .. 0.48

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 8.6e-37
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+++++ls+l+r+ +g a   ++++dl+++  ++ ++lt++++ +a++ +p  ++  r+ +  +l l +ll+++++++  +++++  ll +r l G+++
  CDO69338.1  77 LSFLYLLSFLDRTSIGNAKLYHMTTDLHLTDKQYDIALTIFFFSYAIFEVPSNVFLKRLRPSLWLSLLMLLWGVMMTVQGLVHNYGGLLGMRWLLGMFE 175
                 57899*********9999999**************************************666699999999999944444569999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........kg 190
                 ++lfp+++++++ w++++e g   +l+ +++ ++ ++g ll+++      W ++f+i ++v+++a+++  +++ ++ p+ +++ ++ e+        + 
  CDO69338.1 176 AGLFPGVNYYLSCWYKRSEFGIRAALFFSAATVSGAFGGLLAPA------WAWIFIIEGLVTVIAGIM-SFWIIQDFPDTAKFLSEAERtvvvrrlqS- 266
                 *****************999999999999999999999888885......559**************5.67777887877777777777788888852. PP

       MFS_1 191 tgpaplvp...awkallkdpvlwillialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllall 282
                 + +++++     w +++++   w  ++++ll + g  g    ++ +lp++   +lg++ +  a ll   +++v++++  ++g+++dr  + +r +l++l
  CDO69338.1 267 DDQFSAAGerlKWHYIWRSLLDWKTWVGMLLYM-GADGplyaFSLFLPSI-INQLGFK-ATPANLLTVPVYAVACVVTCIVGFVADR--HGCRGYLTML 360
                 333333335776777777664463555555553.55556677*******7.*******.4555555666666666666699******..556******* PP

       MFS_1 283 llllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn.tagsl 347
                 +l+++a+g+++l ++ +a+l++++++l+ +g   + p ++a++s+++  ++  ++s ++  ++g++
  CDO69338.1 361 CLAVGAAGYIILIASRNAALSYVAVYLAACGIYPTIPNIIAWVSNNVEGSYKRSVSLAMViSFGNI 426
                 ***********************************************7655555554444345545 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.16
       MFS_1 298 ssavllll....vlvliGfglgfvfps 320
                 ++a+++ l    vl+ iG+g+ + ++ 
  CDO69338.1 438 KDAPWYTLghgiVLMYIGIGFVMSVIY 464
                 444455445543333344444443333 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0035        15     114     156 ..     211     257 ..     193     283 .. 0.74
   2 !   14.5   0.1   5.1e-06     0.023      45     146 ..     357     468 ..     351     497 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0035
  Trp_oprn_chp 114 e.....ltawpvlalaggvllllagvllllrarswpamssrYerpaar 156
                   +     ++aw+++ ++ g+++++ag++ ++  +  p   +++ ++a+r
    CDO69338.1 211 AfggllAPAWAWIFIIEGLVTVIAGIMSFWIIQDFPD-TAKFLSEAER 257
                   133444778*****************99888766666.6666665555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.1e-06
  Trp_oprn_chp  45 ltalAl.vllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaa..aaatgvasaaaavelta.......wpvlalaggvllll 131
                   lt l+l v+ A+ + ++a r++++  v+v la++g+  +++ + ++++++     ++  + a +++ ++ + ++++       +p+ +l  g++l+ 
    CDO69338.1 357 LTMLCLaVGAAGYIILIASRNAALSYVAVYLAACGIYPTIPNIIAWVSNNVEGSYKRsvSLAMVISFGNINGAVSSnvyrakdAPWYTLGHGIVLMY 453
                   5556661456677889999**********************999999977554444423334444445555554334555566************** PP

  Trp_oprn_chp 132 agvllllrarswpam 146
                    g+  +++   w+  
    CDO69338.1 454 IGIGFVMSVIYWSLL 468
                   ***999998888653 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.53   2.4e+03       7      25 ..     385     404 ..     380     415 .. 0.70
   2 ?   10.4   0.1   9.6e-05      0.43       7      63 ..     449     508 ..     444     511 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.53
         Vpu   7 iglialivalii.aivvWti 25 
                 + l a+++   i +i+ W  
  CDO69338.1 385 VYLAACGIYPTIpNIIAWVS 404
                 6778888877777*****76 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.6e-05
         Vpu   7 iglialivaliiaivvWtivyrey.kkikkq..keierlikrireraedSgnESdGeeee 63 
                 i l+ +++ +++ ++ W+++ re  ++ + +  + i+  ++  +e a++  +ES  e+++
  CDO69338.1 449 IVLMYIGIGFVMSVIYWSLLKRENaRRERGErdEIIKGVNEHRTELADNGTYESVAEAKQ 508
                 678999*************9887614444446456777889999**********998877 PP

>> Antistasin  Antistasin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   8.2e-05      0.37       5      22 ..     337     354 ..     332     361 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.2e-05
  Antistasin   5 nCelrCpyGyqtDenGCp 22 
                  C  +C  G++ D +GC+
  CDO69338.1 337 ACVVTCIVGFVADRHGCR 354
                 49999************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3519.14
//
Query:       CDO69339.1  [L=278]
Description: hypothetical protein BN946_scf184746.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2071.86
//
Query:       CDO69340.1  [L=586]
Description: hypothetical protein BN946_scf184746.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-26   91.2   3.5    2.8e-24   86.2   2.4    2.6  2  BCS1_N      BCS1 N terminal
    4.4e-15   56.3   0.0    2.3e-08   34.6   0.0    2.6  2  AAA         ATPase family associated with various cellular ac
    5.5e-05   23.0   0.0    0.00011   21.9   0.0    1.4  1  RuvB_N      Holliday junction DNA helicase RuvB P-loop domain
     0.0075   16.7   0.4      0.085   13.2   0.1    2.7  2  AAA_16      AAA ATPase domain
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.034   13.3   0.0    1.7  2  DUF815      Protein of unknown function (DUF815)
      0.098   12.7   0.0       0.23   11.5   0.0    1.6  1  TsaE        Threonylcarbamoyl adenosine biosynthesis protein 
       0.15   11.4   0.0       0.26   10.5   0.0    1.3  1  Zeta_toxin  Zeta toxin


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   2.4   1.1e-27   2.8e-24       1     187 []      63     226 ..      63     226 .. 0.84
   2 ?   -3.3   0.0       2.9   7.4e+03     129     147 ..     289     307 ..     269     310 .. 0.82

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.1e-27
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaqpasrrsrelsvetrtksrssdssaeedededeeedgkkkkplrylPavgtthl 99 
                 +ga+++a+rrl+s l++ + + f+++++++ dD++ d             ++r+++v++   + +++ ++  ++d+  e       +++++P+  +t+ 
  CDO69340.1  63 IGAFIEALRRLFSMLWESAGDDFWLTATFDWDDDTSD-------------TARSIEVSSYCYGLKTSTIEGLEDDDGWE-----DGRMSFIPSLSKTYS 143
                 6999*****************************9755.............45566666555555544443334333333.....449************ PP

      BCS1_N 100 frykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraaagsggeWrrvasRpkRplstV 187
                 ++y+gr++ ++Re+ +     +  +p + l+l++++r++++l++Ll ear++++k++++ + +y   a+++ +W++va+++kRp s+V
  CDO69340.1 144 LWYRGRYMTFRREKTD---RGSYYRPTQVLELRIFSRDPRLLRDLLLEARQAYQKASQHVINVYV--ADGSDRWKHVAKQEKRPVSSV 226
                 **************44...4445669***************************************..579*****************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
      BCS1_N 129 ltltclgrsreilkeLlee 147
                 l+lt+++ + + lk+L+++
  CDO69340.1 289 LSLTMMALDDNSLKSLIAH 307
                 899***********99987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   8.9e-12   2.3e-08       2      75 ..     262     328 ..     261     342 .. 0.80
   2 !   18.9   0.0   6.2e-07    0.0016      85     131 ..     369     415 ..     355     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 8.9e-12
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.T CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.s 75 
                 llyG pG GKT++++++a elg +++ +s++ +         ++++ l++++ +    +il+i++ida + +  +
  CDO69340.1 262 LLYGAPGAGKTSMIHSIAGELGLNIYILSLTMMA-----LDDNSLKSLIAHLPQ---SCILLIEDIDAAFHRGvK 328
                 9********************9888888887777.....668889999977643...4***********998842 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 6.2e-07
                 HHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  85 vvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++  l++ldg   +e+  i+ ++tn+++ ldpallr gR+d ++e++
  CDO69340.1 369 TLSGVLNALDGIAAQEG-RILFATTNDYSALDPALLRpGRLDLHVEFQ 415
                 66778999****99766.999***********************9987 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.4e-08   0.00011      37      94 ..     262     320 ..     257     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.4e-08
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvlek.agdlaalltnleekdvlfideih 94 
                 llyG+PG Gkt++ + ia elg ++ i s  ++    + l +l+++l ++ +l+i++i 
  CDO69340.1 262 LLYGAPGAGKTSMIHSIAGELGLNIYILSLTMMALdDNSLKSLIAHLPQSCILLIEDID 320
                 9***************************999887515679***************9985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.52   1.3e+03     107     139 ..      33      62 ..       4      64 .. 0.58
   2 !   13.2   0.1   3.3e-05     0.085      24      54 ..     256     287 ..     250     389 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.52
      AAA_16 107 avpelagaea........srllellkrll.allsrderplvl 139
                          a        s+l +ll++ll + +++    +vl
  CDO69340.1  33 T--------AphasalgpSSLPQLLSALLsMHATQ----FVL 62 
                 2........12334455699999999999555554....555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.3e-05
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggi 54 
                 p  +  ll+G++G GK+s++ +++ +l  + ++
  CDO69340.1 256 PfrRGYLLYGAPGAGKTSMIHSIAGELGLN-IY 287
                 445789**************9999877766.44 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05     0.034      56     116 ..     261     319 ..     252     328 .. 0.79
   2 ?   -2.5   0.0       0.9   2.3e+03     177     190 ..     513     526 ..     509     544 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDDL 116
                  LL+Ga G+GK s+++++  e+  +   ++ ++   l++ ++l +l+++ p+ +il++ D+
  CDO69340.1 261 YLLYGAPGAGKTSMIHSIAGELGLNI-YILSLTMMALDD-NSLKSLIAHLPQSCILLIEDI 319
                 59*****************9997664.445555555544.456677889999999999986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.9
      DUF815 177 eeklsLsdRFGlwl 190
                 ee  +L+dRF   +
  CDO69340.1 513 EEIAALADRFASLI 526
                 78889*****8766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     9e-05      0.23      22      53 ..     261     293 ..     238     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9e-05
                 EEEEESTTSSHHHHHHHHHHHTT--.----TTT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve.evkSPTF 53 
                  lL+G  GaGKT +++++a +lg++  + S T 
  CDO69340.1 261 YLLYGAPGAGKTSMIHSIAGELGLNiYILSLTM 293
                 799********************9988888775 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0001      0.26      19      44 ..     261     284 ..     242     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqg 44 
                 +ll G+pGAGK+++++ ++ el+   
  CDO69340.1 261 YLLYGAPGAGKTSMIHSIAGELG--L 284
                 7999**************99994..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.50
# Mc/sec: 3520.42
//
Query:       CDO69341.1  [L=647]
Description: hypothetical protein BN946_scf184746.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-36  124.1   0.2    1.2e-35  123.2   0.2    1.5  1  BCS1_N        BCS1 N terminal
    2.2e-15   57.3   0.0    1.6e-14   54.4   0.0    2.2  1  AAA           ATPase family associated with various cellular 
    0.00051   20.5   0.0     0.0014   19.1   0.0    1.7  1  AAA_16        AAA ATPase domain
     0.0019   18.0   0.0     0.0036   17.1   0.0    1.3  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
     0.0022   17.2   0.0     0.0039   16.4   0.0    1.4  1  DUF815        Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.011   15.6   0.1       0.24   11.3   0.0    2.4  2  NACHT         NACHT domain
      0.047   14.1   0.1        1.2    9.6   0.0    2.8  3  RNA_helicase  RNA helicase
      0.057   12.8   0.0      0.097   12.0   0.0    1.3  1  ATPase        KaiC
      0.087   12.4   0.0       0.16   11.5   0.0    1.4  1  AAA_25        AAA domain
       0.11   12.7   0.0       0.69   10.1   0.0    2.2  2  AAA_33        AAA domain
       0.11   12.5   0.0       0.25   11.3   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
       0.13   11.8   0.0       0.23   11.0   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
       0.15   11.3   0.0        0.3   10.4   0.0    1.4  1  Zeta_toxin    Zeta toxin
       0.22   11.4   0.0       0.47   10.3   0.0    1.5  1  ATPase_2      ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.2   9.6e-39   1.2e-35       1     187 []      72     277 ..      72     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 9.6e-39
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaq.............................pasrrsrelsvetrtksrssdssa 70 
                 +ga++++ rrll+++++ + ++f+++++++ +De+ dw++ Wls++                               s ++r+l+v+trt +++ +  +
  CDO69341.1  72 IGAVVETSRRLLTKVYRDFINYFWLTATFDGNDECVDWLMFWLSKHsifrkscpalvayfvyqtltepcfmkslfYRSGTARTLDVSTRTFGKNGAVAG 170
                 699**********************************************************************99888999***********9855554 PP

      BCS1_N  71 ee..dededeeedgkkkkplrylPavgtthlfrykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraaa 167
                 e+  +   d+    +  +++++lP+  t+++++yk r++ +tR++    +d  ++++++tl++++l+r+++il +Ll ea++l++ ++e+ +++y   +
  CDO69341.1 171 EQggE---DD----TDGRKISFLPSLSTSYTLWYKYRYVSITRDE---VMDGPWNGRRQTLQVQILTRDHQILLDLLLEAKKLFHHASENMISVYV--S 257
                 44321...22....23789*************************9...678889999***************************************..5 PP

      BCS1_N 168 gsggeWrrvasRpkRplstV 187
                 + + +W+rv++ +kRp++++
  CDO69341.1 258 DPSDYWKRVSTHRKRPMESI 277
                 689***************97 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.3e-17   1.6e-14       2     131 ..     313     457 ..     312     458 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.3e-17
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.......................TTC CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.......................sgs 77 
                 llyG pG GKT+l++++a el+ +++ +s+++l          +++ +++++ +   ++i+++++ida + +                        s++
  CDO69341.1 313 LLYGAPGSGKTSLIHSIAGELNLDVYILSLTRLG-----LDDTSLSSIIADLPT---QCIVLVEDIDAAFHQGvkrdiadperdssegnqqgstkgSDA 403
                 9*********************999999999998.....778899999988754...4*************99999************99998877777 PP

                 CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                   ++++ +++ Ll++ldg   +e+  i+ ++tn+++ ldpal r gR+d ++e++
  CDO69341.1 404 PATVGRVTLSGLLNALDGIAAQEG-RILFATTNDYNALDPALCRpGRLDLHLEFK 457
                 889999***************766.999**********************99986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.1e-06    0.0014      24      76 ..     307     359 ..     299     441 .. 0.55

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-06
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqal 76 
                 p  +  ll+G++G+GK+sl+ +++ +l+ d ++ l+ +   l  ++++s ++  l
  CDO69341.1 307 PhrRGYLLYGAPGSGKTSLIHSIAGELNLD-VYILSLTRLGL-DDTSLSSIIADL 359
                 344889******************999999.55533333222.233443322222 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.8e-06    0.0036      36      93 ..     312     370 ..     301     378 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.8e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvle.kagdlaalltnleekdvlfidei 93 
                  llyG+PG Gkt+l + ia el+ ++ i s   l    + l++++++l ++ ++++++i
  CDO69341.1 312 YLLYGAPGSGKTSLIHSIAGELNLDVYILSLTRLGlDDTSLSSIIADLPTQCIVLVEDI 370
                 59**************************9998886246789999999999999999888 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06    0.0039      56     116 ..     312     370 ..     288     380 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDDL 116
                  LL+Ga G+GK sl++++  e++ + + ++ +++  l++  +l +++++ p+++i++v D+
  CDO69341.1 312 YLLYGAPGSGKTSLIHSIAGELNLD-VYILSLTRLGLDDT-SLSSIIADLPTQCIVLVEDI 370
                 69*******************9876.67888888888885.69999************997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.18   2.3e+02      14      99 ..       4     112 ..       4     132 .. 0.66
   2 ?   11.3   0.0   0.00019      0.24       4      24 ..     313     333 ..     310     339 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....-HCHHHCCCCTS--SSS-C...........CHHHHCCSCCCEE..............EE CS
       NACHT  14 TtLlqklalawaegklpqgafklvFflslrelsrsgna.rsladllfsqlpepaapvse...........vwavllelperlL..............li 86 
                 T++lq++++a+++g  +      + + s++ ++   ++   +a +   qlp + +                +  ++e  +rlL               +
  CDO69341.1   4 TVFLQSVMSAIQSGAVNFT---APHVPSSSNTTAAAATgAAVASFSLMQLPSLLMMLMSfsavrdwlkllLIGAVVETSRRLLtkvyrdfinyfwltAT 99 
                 6777777777777775443...33333333333333334466666667777777766666677777777777888888888889999998898888778 PP

                 EE-STT-SS-TCH CS
       NACHT  87 lDglDelvtdlgq 99 
                 +Dg De+v+ l +
  CDO69341.1 100 FDGNDECVDWLMF 112
                 9999999986665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00019
                 EEEC-TTTCHHHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklalaw 24 
                 +l G++GsGKT L++++a ++
  CDO69341.1 313 LLYGAPGSGKTSLIHSIAGEL 333
                 799**************9876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.7   2.2e+03      85     107 .]      10      32 ..       5      32 .. 0.86
   2 ?    9.6   0.0   0.00092       1.2       2      23 ..     313     334 ..     312     376 .. 0.85
   3 ?    0.2   0.0      0.79     1e+03      20      66 ..     546     593 ..     540     600 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
  RNA_helicase  85 nmasleekgtlftSkvvivtsNv 107
                    m ++++ ++ ft+ +v ++sN+
    CDO69341.1  10 VMSAIQSGAVNFTAPHVPSSSNT 32 
                   6888888889***********95 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00092
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +lyG++g GK++l++++a +l 
    CDO69341.1 313 LLYGAPGSGKTSLIHSIAGELN 334
                   69**************998886 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.79
  RNA_helicase  20 kallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.n 66 
                   ++l++++ +   ++++s ++ + ++  Y+  ++  + D +++++++ +
    CDO69341.1 546 AELADRFASAVPNRTFSMATLQGYLMAYKTRPYDAVADAPAWVERKlQ 593
                   56667777778899999***********************99988544 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.6e-05     0.097      13      35 ..     303     325 ..     286     329 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.6e-05
      ATPase  13 kgGipegrvvlitGepGtGKtif 35 
                 ++Gip++r +l++G pG+GKt +
  CDO69341.1 303 ERGIPHRRGYLLYGAPGSGKTSL 325
                 58*******************65 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.16      14      54 ..     290     330 ..     280     336 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      AAA_25  14 dlaapppprrwlvkgllpagelallaGapgtGKttlaldla 54 
                 d +  ++++ w+ ++ +p     ll+Gapg+GKt l  ++a
  CDO69341.1 290 DAKDFLASKAWYAERGIPHRRGYLLYGAPGSGKTSLIHSIA 330
                 55667788899999999******************998876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00054      0.69       3      25 ..     313     342 ..     312     435 .. 0.79
   2 ?   -0.3   0.0      0.84   1.1e+03      27      87 ..     534     594 ..     522     607 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00054
      AAA_33   3 llvGlpGsGKstlaerllkklg.......a 25 
                 ll G+pGsGK+ l+++++ +l         
  CDO69341.1 313 LLYGAPGSGKTSLIHSIAGELNldvyilsL 342
                 578***************999876433333 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.84
      AAA_33  27 llssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerar 87 
                 +++ ++l+rr +++  ++       ++   ++l++++  + ++ +++++da+ + +r+ ++
  CDO69341.1 534 TVRAPKLSRRKAAELADRFASAVPNRTFSMATLQGYLMAYKTRPYDAVADAPAWVERKLQE 594
                 4777777777777666666544444444566777899899999999999999887766643 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.25       3      34 ..     313     344 ..     311     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltr 34 
                 lL G+pG+gK++l+ ++a  ln  v +  ltr
  CDO69341.1 313 LLYGAPGSGKTSLIHSIAGELNLDVYILSLTR 344
                 9*****************99998888877765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.23      25      63 ..     301     339 ..     295     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkldkekyl 63 
                   e  + +++  ll+G  G+GKt++i+++  +l+ + y+
  CDO69341.1 301 YAERGIPHRRGYLLYGAPGSGKTSLIHSIAGELNLDVYI 339
                 56667889999******************9999977776 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023       0.3      19      41 ..     312     334 ..     294     345 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
  Zeta_toxin  19 illgGqpGAGKselaellkdele 41 
                 +ll G+pG+GK++l++ ++ el+
  CDO69341.1 312 YLLYGAPGSGKTSLIHSIAGELN 334
                 7999**************99983 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00037      0.47      23      55 ..     312     340 ..     302     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00037
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyi 55 
                 y++YG  gsGKt+L+  i+ +l+      +y+ 
  CDO69341.1 312 YLLYGAPGSGKTSLIHSIAGELNL----DVYIL 340
                 899*************99998832....34555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 4238.30
//
Query:       CDO69342.1  [L=137]
Description: hypothetical protein BN946_scf184746.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   37.2   4.0    0.00043   20.6   0.3    2.6  2  zf-C2H2    Zinc finger, C2H2 type
    5.5e-08   32.4   4.2    3.1e-05   23.6   0.6    2.4  2  zf-H2C2_5  C2H2-type zinc-finger domain
    3.5e-07   30.5   3.0      0.007   17.1   0.2    2.7  2  zf-C2H2_4  C2H2-type zinc finger
     0.0029   18.0  10.3        2.3    8.8   0.1    3.9  4  zf-H2C2_2  Zinc-finger double domain
  ------ inclusion threshold ------
       0.13   12.3   2.2       0.17   11.9   0.1    2.0  2  zf-C2H2_6  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   1.1e-06     0.004       2      23 .]      28      51 ..      27      51 .. 0.97
   2 !   20.6   0.3   1.2e-07   0.00043       5      23 .]      98     116 ..      97     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
                EETTTT..EEESSHHHHHHHHHCC CS
     zf-C2H2  2 kCpdCg..ksFkrksnLkrHirtH 23
                kCp+C+  ++ +r+ +LkrHi tH
  CDO69342.1 28 KCPYCPyiQTSRRSPDLKRHIETH 51
                8**********************9 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
                 TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                 +C k+F+r++ L rH+rtH
  CDO69342.1  98 GCRKVFSRRDALSRHLRTH 116
                 7*****************9 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   8.6e-09   3.1e-05       2      25 ..      28      52 ..      27      53 .. 0.91
   2 !   10.1   0.2   0.00015      0.54      12      26 .]     105     118 ..     104     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 8.6e-09
   zf-H2C2_5  2 KCsqCDY..stawksnLkRHlrrkHt 25
                KC++C+Y  ++ ++ +LkRH++ +Ht
  CDO69342.1 28 KCPYCPYiqTSRRSPDLKRHIE-THT 52
                9******76688999*******.**8 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00015
   zf-H2C2_5  12 wksnLkRHlrrkHtg 26 
                 +++ L RHlr +H+g
  CDO69342.1 105 RRDALSRHLR-THEG 118
                 5788******.**97 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   3.3e-05      0.12       1      23 [.      27      51 ..      27      52 .. 0.70
   2 !   17.1   0.2     2e-06     0.007       6      23 ..      99     116 ..      97     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.3e-05
   zf-C2H2_4  1 fkCpiCgksFsskka....LlrHlkth 23
                +kCp+C  ++   ++    L+rH++th
  CDO69342.1 27 WKCPYC--PYIQTSRrspdLKRHIETH 51
                59****..55422223567*******9 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2e-06
   zf-C2H2_4   6 CgksFsskkaLlrHlkth 23 
                 C+k+Fs+++aL+rHl+th
  CDO69342.1  99 CRKVFSRRDALSRHLRTH 116
                 *****************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.0     0.018        65      15      22 ..      27      34 ..      21      35 .. 0.87
   2 !    7.9   0.0    0.0013       4.5       1      13 [.      43      55 ..      43      66 .. 0.77
   3 ?   -0.5   0.1      0.54   1.9e+03      20      25 ..      99     104 ..      98     105 .. 0.87
   4 !    8.8   0.1   0.00065       2.3       1      11 [.     108     118 ..     108     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
   zf-H2C2_2 15 yeCplCdk 22
                ++Cp+C++
  CDO69342.1 27 WKCPYCPY 34
                68****98 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0013
   zf-H2C2_2  1 nLrrHirkHtgek 13
                +L+rHi +Ht ++
  CDO69342.1 43 DLKRHIETHTRPF 55
                69********887 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.54
   zf-H2C2_2  20 CdkaFk 25 
                 C+k+F+
  CDO69342.1  99 CRKVFS 104
                 *****8 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00065
   zf-H2C2_2   1 nLrrHirkHtg 11 
                 +L+rH+r+H g
  CDO69342.1 108 ALSRHLRTHEG 118
                 79*******87 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.46   1.6e+03       3       7 ..      28      32 ..      27      32 .. 0.92
   2 ?   11.9   0.1   4.8e-05      0.17       7      25 ..      99     117 ..      99     119 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.46
   zf-C2H2_6  3 eCsvC 7 
                +C++C
  CDO69342.1 28 KCPYC 32
                7**** PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.8e-05
   zf-C2H2_6   7 CsksFpslqaLggHkksHr 25 
                 C k+F+  +aL  H+++H+
  CDO69342.1  99 CRKVFSRRDALSRHLRTHE 117
                 99****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 970.12
//
Query:       CDO69343.1  [L=108]
Description: hypothetical protein BN946_scf184746.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-15   56.3  10.2    5.3e-09   35.8   0.9    2.1  2  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.9     3e-13   5.3e-09       1      52 [.      12      63 ..      12      64 .. 0.96
   2 !   27.8   3.0   9.4e-11   1.7e-06       3      45 ..      62     104 ..      60     106 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3e-13
        CsbD  1 dkikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaak 52
                +k  g+ + +kG+v e++G++Tg ++++  G+ + ++G+ +  +++ak+ ++
  CDO69343.1 12 NKTTGQYHSLKGNVVETIGDLTGAQSWKESGRQEHVEGETEYNAAQAKNYVE 63
                58899********************************************998 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 9.4e-11
        CsbD   3 ikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkyg 45 
                 ++g+a+ ++Gk   ++G +Tgd+++e+ G+ +  kG+a+q   
  CDO69343.1  62 VEGAADRLAGKKDAVIGALTGDREQETSGNIRHDKGQAKQELN 104
                 79**************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 815.55
//
Query:       CDO69344.1  [L=105]
Description: hypothetical protein BN946_scf184746.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-16   58.3  13.0    1.5e-08   34.4   2.9    2.0  2  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   2.9   8.3e-13   1.5e-08       1      52 [.      10      61 ..      10      62 .. 0.96
   2 !   30.9   3.4     1e-11   1.9e-07       3      46 ..      60     103 ..      59     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 8.3e-13
        CsbD  1 dkikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaak 52
                +k  g+ + +kG+v e++G +Tg e +   Gk++ ++G+a+  +++ak  a+
  CDO69344.1 10 NKTTGQYHSIKGNVVETIGNLTGAETWTNSGKEEHAQGEAEYQAAQAKGYAE 61
                58899*******************************************9987 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 1e-11
        CsbD   3 ikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygd 46 
                 ++g+++ + Gk   ++G +Tgd+++eaeG+ +  kG++qq + +
  CDO69344.1  60 AEGTIDRLGGKKDAVVGAITGDRQQEAEGNLRHDKGQVQQEFNK 103
                 69**************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 748.90
//
Query:       CDO69345.1  [L=264]
Description: hypothetical protein BN946_scf184746.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1894.63
//
Query:       CDO69346.1  [L=209]
Description: hypothetical protein BN946_scf184746.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1454.65
//
Query:       CDO69347.1  [L=893]
Description: hypothetical protein BN946_scf184746.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-26   92.6   0.1    8.8e-25   87.6   0.0    2.5  2  Plavaka    Plavaka transposase
  ------ inclusion threshold ------
      0.093   12.8   1.0       0.34   11.0   1.0    2.0  1  zf-C2H2_6  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.01        94      46      77 ..     302     333 ..     272     360 .. 0.82
   2 !   87.6   0.0   9.8e-29   8.8e-25      84     321 ..     385     670 ..     375     673 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.01
     Plavaka  46 lwfrdplevikellgnpdfadeldyaPereyt 77 
                 l+fr +levi + +++  fade ++ P++ + 
  CDO69347.1 302 LHFRKILEVIISEVQDRRFADERHWLPHKTFW 333
                 789************************99986 PP

  == domain 2  score: 87.6 bits;  conditional E-value: 9.8e-29
     Plavaka  84 rvysemmtgdwaweqq.......ie.ek.ptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpi..........p 163
                 r++sem+  + + + +        + ++ p+    ++p+ l+sD T l  f g+ + +P+Yl i+ni k vr  ++      lay p           +
  CDO69347.1 385 RIFSEMYNSNSMNQAHkklcsqpRNpDDlPSVEYAILPLLLWSDATLLALF-GSAKLWPIYLYIANIMKYVRGMPTDFVAQHLAYVPAlpddlldyyrE 482
                 78888888887777766766544222333567899****************.************************************99999987744 PP

     Plavaka 164 klkkikkskefrklfkrqlfHaclarile.pLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqg...wCpkctakkkelgdl...ees 255
                 + k+   ++e+ + ++ +l+ +  +++l+    +a  +g+ ++cadg+vrr +p +  y aDypE+vl+++i++     Cp+c++k +++ ++    + 
  CDO69347.1 483 HYKHA-PTEETLRWLRGELMQKVWSKLLDdDFVHAYIHGILVECADGVVRRLFPQFFTYSADYPEKVLLTAIKNLgkcPCPRCHIKLSQISQSgthVDD 580
                 44554.4555556688899999998888625799**************************************874434789********9886422222 PP

     Plavaka 256 elrtreetlelleeaade...................lkklwkeyglkgviepFwedlprad....ihelltpDlLHq....likgvfkdHlv 321
                 ++r +e ++ +  +   +                    ++ ++   l++++  F + l  +d     +e+++pDl+H+    + kg+f  Hl+
  CDO69347.1 581 QRRAHECVDGCALRN--DikrackwlfthgyavtskrIRNVLDGRSLVPIQAAFSQCLGEVDagfnFYEIFAPDLMHEfelsIWKGTFL-HLM 670
                 344444333332222..1346788999999999877777799999***********998875333379*********733335688888.877 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   3.8e-05      0.34       2      23 ..       3      25 ..       2      25 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
   zf-C2H2_6  2 heCsvCsksFpslqaLggHk.ks 23
                + C  C+k++ s   Lg H+ k+
  CDO69347.1  3 YPCESCNKTYTSAIGLGQHRsKC 25
                99*****************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 5571.11
//
Query:       CDO69348.1  [L=232]
Description: hypothetical protein BN946_scf184746.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1660.50
//
Query:       CDO69349.1  [L=142]
Description: hypothetical protein BN946_scf184746.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1124.10
//
Query:       CDO69350.1  [L=342]
Description: hypothetical protein BN946_scf184746.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2292.63
//
Query:       CDO69351.1  [L=332]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-07   29.3   0.0    8.5e-07   28.6   0.0    1.3  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.8e-11   8.5e-07      16      92 ..      87     175 ..      75     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-11
                     EETTSEEEEEEEE.........EEEEEEEECCEESSEEEEEEEE.---STTEEEEEEEET..GGTSTTEEEEE.EEETT-TTEEEEEEEB CS
  Glyco_hydro_16  16 vengetltltldk.........esgsrikskksflyGkvearik.aaksaGvvtafylss..edekahdEiDi.EflGndtgkvqtnvyg 92 
                     v+++ t++l +d          +++ ri++k+s   G + a+i  ++++ Gv++a++     +d+++ +EiDi E + n++ + q ++++
      CDO69351.1  87 VQDDGTVVLAVDDtsnvpaggnRNSIRISTKQSWGRGLFIADIYaMPHGCGVWPAYWSLGggKDWPNAGEIDIiEGV-NTNVQNQITLHS 175
                     44556888888888899999977899*****************99*************643366***********99.667778888883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2294.64
//
Query:       CDO69352.1  [L=312]
Description: hypothetical protein BN946_scf184746.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-18   64.9   8.8      0.024   15.5   1.0    5.6  5  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.03   13.3   0.1        0.3   10.0   0.0    2.3  3  Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping prot
       0.22    9.9   0.1       0.29    9.5   0.1    1.1  1  Rav1p_C   RAVE protein 1 C terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   5.5e-05      0.33      15      38 .]      74      98 ..      63      98 .. 0.67
   2 !   15.5   1.0   4.1e-06     0.024       8      37 ..     110     141 ..     105     142 .. 0.73
   3 !   15.1   0.0   5.4e-06     0.032       4      38 .]     149     185 ..     146     185 .. 0.79
   4 !   11.4   0.0     8e-05      0.48      12      38 .]     218     245 ..     208     245 .. 0.82
   5 !   11.4   0.0   7.7e-05      0.46       3      37 ..     265     301 ..     263     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.5e-05
                EEEEETTSSE.......EEEEETTSEEEEEE CS
        WD40 15 slafspdgaw.......lasGsdDgtvriWd 38
                ++      aw       ++s+s Dg++++Wd
  CDO69352.1 74 DV------AWseihenqIVSASGDGSLKLWD 98
                55......444444446666655*******9 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.1e-06
                 ESS.SSEEEEEEETTSSE.......EEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw.......lasGsdDgtvriW 37 
                   H   v s+      +w       ++s+s+Dgtv++W
  CDO69352.1 110 HEHtREVFSV------DWsninkdqFISSSWDGTVKLW 141
                 5573349999......665556666889********** PP

  == domain 3  score: 15.1 bits;  conditional E-value: 5.4e-06
                 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 ++t+ +H s+v+   fsp+++ + a++s Dgt++++d
  CDO69352.1 149 ITTIQAHaSCVYQALFSPHQPDVvATCSTDGTLKVFD 185
                 567889*8889766688888886269999******98 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 8e-05
                 SEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  12 svtslafspdgawl.asGsdDgtvriWd 38 
                  v sl+++++ +++ as++ D+ ++ Wd
  CDO69352.1 218 EVLSLDWNKYRPFVlASAGVDKAIKTWD 245
                 499**********7256799*******9 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 7.7e-05
                 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 
                 c   l GH   v+ +++sp+ a  las+s+D t+r++
  CDO69352.1 265 CESQLLGHeLAVRRVQWSPHRADmLASASYDMTCRVY 301
                 6667889*666****87777777567889******97 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.053   3.2e+02     202     220 ..      85     103 ..      67     119 .. 0.75
   2 ?   10.0   0.0     5e-05       0.3     174     216 ..     142     186 ..     116     191 .. 0.79
   3 ?   -3.2   0.0      0.52   3.1e+03     258     275 ..     230     247 ..     225     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.053
    Ge1_WD40 202 latasedGevkffqvyled 220
                 +  as dG +k++ v ++d
  CDO69352.1  85 IVSASGDGSLKLWDVMIND 103
                 5678889999999887765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 5e-05
    Ge1_WD40 174 veeieegllkieehs.liveaafspdG.talatasedGevkffqv 216
                 + +  +++  i+ h+ ++ +a fsp    ++at+s+dG++k f +
  CDO69352.1 142 TPDRPRSITTIQAHAsCVYQALFSPHQpDVVATCSTDGTLKVFDL 186
                 55556677889999659*******9752799**********9975 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.52
    Ge1_WD40 258 faitgadnnselklWsce 275
                 f++++a  ++ +k W c 
  CDO69352.1 230 FVLASAGVDKAIKTWDCR 247
                 788888888999999996 PP

>> Rav1p_C  RAVE protein 1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   4.9e-05      0.29      38     113 ..      78     153 ..      61     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 4.9e-05
     Rav1p_C  38 sslkkvavvdes.rseLsiwdlksgvleyeeefeeedsikdldwtstpdsqsilavgFekkvllltqlRydylnkgp 113
                 s ++   +v+ s   +L +wd++ + l  +   e+++++ ++dw+ +++ q i + +++ +v l+t  R   + +++
  CDO69352.1  78 SEIHENQIVSASgDGSLKLWDVMINDLPIRAWHEHTREVFSVDWSNINKDQFI-SSSWDGTVKLWTPDRPRSITTIQ 153
                 6666667785551569*******************************999976.66999999999999976666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2118.44
//
Query:       CDO69353.1  [L=364]
Description: hypothetical protein BN946_scf184746.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-30  104.8   0.0    6.5e-30  104.4   0.0    1.2  1  SIR2      Sir2 family


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   3.6e-34   6.5e-30       1     174 [.      46     275 ..      46     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 3.6e-34
                 -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHH...HHHHHHHHHHHHHHCC.TSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S.. CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakeelaspealfskkl...lveevfyniarellae.eaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk.. 93 
                 GAG+S++sGi+ +R+++G y + + +++   e ++ + +   ++++ + +++   ++  +a+pn++H al+ l++++ + ++iTQN+DgL++ka s   
  CDO69353.1  46 GAGVSVDSGIRAYRGHKGSYLNPNYKPIFYHELMEPNARgagFRQRYWLRSYLGYPPVrDAQPNPTHFALAALQHSSVTPHIITQNVDGLHHKAISDiw 144
                 9**************************99999998765422245557******999999***********************************98777 PP

                 .......SEEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT......................................B-TTTCC......BEEEEE CS
        SIR2  94 .......kvvelHGslakakcvkcekkldkeelqeeieaekvp.....................................ecekcgk......llkpdv 142
                         ++elHG+l+++kc++ ++ +++++ q+++ +++++                                     ec++c        ++kp+v
  CDO69353.1 145 daqrrkeGILELHGTLHRVKCSHGHE-MERQKFQDMLGEANPQwkafmeelertnsrprtnpdgdvvlpagtrydqfivpECPSCLLenrrnsMIKPEV 242
                 77777778**************9887.888999999999988899999999999999999999999999999999998887888766888898****** PP

                 --CTSB-S.HHHHHHHHHHHH-SEEEEES--ST CS
        SIR2 143 vfFGealp.dklkkliekveeadlllviGtSlk 174
                 +fFGe++p +  ++ ++ v++ d l viGt l+
  CDO69353.1 243 IFFGESIPsEVRDRSFDIVDQHDRLFVIGTTLA 275
                 ********6666777889************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2597.43
//
Query:       CDO69354.1  [L=277]
Description: hypothetical protein BN946_scf184746.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   13.2   0.0       0.12   12.6   0.0    1.3  1  DUF1768   Domain of unknown function (DUF1768)


Domain annotation for each model (and alignments):
>> DUF1768  Domain of unknown function (DUF1768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.6e-06      0.12      54     127 ..      76     155 ..      48     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-06
     DUF1768  54 tevaeeilak.spkeakalgr....kvrnfdeedWeeekeevvregnlaKfsqneelrelLla.tgdrelveasprDriW 127
                  +++++il++ s +  + lg+    k +n+dee+W++++ + vr+  ++  + +++ ++lL +   + el  +s +++ W
  CDO69354.1  76 ADKLCHILSEhSVRCKRCLGKiqlsKKNNYDEEHWKKHRRRCVRQPDWKVAESRAKNSRLLGRmSSTPELTADSASETSW 155
                 4558899977355555567999998889****************987765555555555554434555677777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2217.76
//
Query:       CDO69355.1  [L=418]
Description: hypothetical protein BN946_scf184746.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00014   22.0   1.3        0.8    9.9   0.1    3.3  3  DUF4451        Domain of unknown function (DUF4451)
  ------ inclusion threshold ------
      0.048   13.1   1.2        9.6    5.8   0.1    2.6  2  zf-ribbon_3    zinc-ribbon domain
      0.057   13.4   4.0        4.3    7.4   1.4    2.6  2  DZR            Double zinc ribbon
       0.12   12.3   0.9        2.5    8.1   0.1    2.6  2  zf-dskA_traR   Prokaryotic dksA/traR C4-type zinc finger
       0.44   10.5   4.0        5.7    6.9   0.1    3.3  3  C1_1           Phorbol esters/diacylglycerol binding domain (
        2.2    8.1   4.6        9.9    6.0   0.3    2.5  2  zinc_ribbon_2  zinc-ribbon domain
          5    7.2   6.2        3.7    7.6   1.2    2.6  2  zf-CW          CW-type Zinc Finger


Domain annotation for each model (and alignments):
>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1     0.002       5.1      81     121 ..     117     163 ..      64     164 .. 0.70
   2 !    9.9   0.1   0.00031       0.8      81     121 ..     221     255 ..     171     256 .. 0.67
   3 ?    2.2   0.0     0.076   1.9e+02      76     118 ..     277     313 ..     257     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.002
     DUF4451  81 k............ekegivCpkCneiievslsknkkekkvnellayfrHfkkc 121
                 +            e ++++C++C ++i+++ + +           ++ H k+c
  CDO69355.1 117 RqfleddpntgevEPHQVFCKACGNWIDLNPKLKYVM------RLWIEHKKHC 163
                 1455556666666788899*********983322222......2377777666 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00031
     DUF4451  81 kekegivCpkCneiievslsknkkekkvnellayfrHfkkc 121
                  + ++++C+ C+++i++s +  ++     +l+++  H +kc
  CDO69355.1 221 LKPDAAFCKDCQKWIKLSPQ--TR----YSLYHWRVHTQKC 255
                 2445556*********9932..22....2578899999887 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.076
     DUF4451  76 rkakekekegivCpkCneiievslsknkkekkvnellayfrHf 118
                 ++ k  + +++ C+ C  +ie++   + + +k      +  H 
  CDO69355.1 277 EHVKAFTPRSVECKLCAGTIELGGNADYDLTK------WEEHK 313
                 333333556666*****999999887776653......55555 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0038       9.6      11      24 ..     129     141 ..     125     143 .. 0.84
   2 ?    5.5   0.1    0.0046        12      12      23 ..     221     232 ..     219     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0038
  zf-ribbon_3  11 plssddnvCpyCGt 24 
                  + ++ +++C+ CG 
   CDO69355.1 129 V-EPHQVFCKACGN 141
                  5.8999******95 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0046
  zf-ribbon_3  12 lssddnvCpyCG 23 
                  l++d+ +C+ C+
   CDO69355.1 221 LKPDAAFCKDCQ 232
                  59*********7 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0061        16       8      22 ..     129     143 ..     125     165 .. 0.69
   2 ?    7.4   1.4    0.0017       4.3       7      30 ..     220     254 ..     218     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0061
         DZR   8 lppdarfCseCgtkl 22 
                 ++p++ fC++Cg+ +
  CDO69355.1 129 VEPHQVFCKACGNWI 143
                 566777888888765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0017
         DZR   7 elppdarfCseCgtklkavaa...........edr 30 
                 el+pda fC++C++ +k  ++            ++
  CDO69355.1 220 ELKPDAAFCKDCQKWIKLSPQtryslyhwrvhTQK 254
                 6899*********9876555556777777444333 PP

>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.077     2e+02      20      31 ..     129     140 ..     127     141 .. 0.80
   2 ?    8.1   0.1   0.00099       2.5      18      31 ..     219     232 ..     214     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.077
  zf-dskA_traR  20 alPgarlCveCq 31 
                   + P+ ++C++C 
    CDO69355.1 129 VEPHQVFCKACG 140
                   678999999995 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00099
  zf-dskA_traR  18 lralPgarlCveCq 31 
                    +  P+a +C++Cq
    CDO69355.1 219 TELKPDAAFCKDCQ 232
                   6889*********9 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.059   1.5e+02      10      21 ..     132     143 ..     128     164 .. 0.79
   2 ?    6.9   0.1    0.0022       5.7      10      47 ..     224     260 ..     218     264 .. 0.78
   3 ?    0.1   0.0      0.31   7.9e+02       9      21 ..     284     296 ..     278     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.059
                 S--B-TTT-SB- CS
        C1_1  10 qptfCkhCgefl 21 
                 ++ fCk Cg+ +
  CDO69355.1 132 HQVFCKACGNWI 143
                 5789****9987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
                 S--B-TTT-SB--SSSS-EEEETTT--EE-CC.CCTTS- CS
        C1_1  10 qptfCkhCgeflwgkekqglkCswCkllvHkk.Chekvp 47 
                 + +fCk C++ +  k ++  + s  + +vH + C + vp
  CDO69355.1 224 DAAFCKDCQKWI--KLSPQTRYSLYHWRVHTQkCSSTVP 260
                 578*********..7777777777777788766777776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.31
                 SS--B-TTT-SB- CS
        C1_1   9 kqptfCkhCgefl 21 
                  ++  Ck C+  +
  CDO69355.1 284 PRSVECKLCAGTI 296
                 6678899999877 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0039       9.9       8      20 ..     128     140 ..     128     141 .. 0.86
   2 ?    3.4   0.5     0.026        65       7      19 ..     219     231 ..     219     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0039
  zinc_ribbon_2   8 elqdnakFCpyCG 20 
                    e+++ ++FC  CG
     CDO69355.1 128 EVEPHQVFCKACG 140
                    6789999*****9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.026
  zinc_ribbon_2   7 aelqdnakFCpyC 19 
                    +el+++a FC  C
     CDO69355.1 219 TELKPDAAFCKDC 231
                    5999******888 PP

>> zf-CW  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.14   3.5e+02       3      17 ..     134     148 ..     132     162 .. 0.80
   2 ?    7.6   1.2    0.0015       3.7       4      23 ..     227     245 ..     224     260 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.14
       zf-CW   3 VqCdkClKWRrlpte 17 
                 V C+ C+ W  l ++
  CDO69355.1 134 VFCKACGNWIDLNPK 148
                 77*******666665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0015
       zf-CW   4 qCdkClKWRrlptevdksel 23 
                  C++C+KW +l++++  ++l
  CDO69355.1 227 FCKDCQKWIKLSPQT-RYSL 245
                 5*********99995.5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3182.48
//
Query:       CDO69356.1  [L=269]
Description: hypothetical protein BN946_scf184746.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-15   57.4   0.0      2e-15   56.9   0.0    1.1  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.024   14.0   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G
      0.038   14.7   0.0      0.084   13.6   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
      0.041   13.6   0.0      0.065   13.0   0.0    1.2  1  Met_10           Met-10+ like-protein
      0.055   14.2   0.0       0.11   13.2   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      0.057   13.0   0.0      0.095   12.2   0.0    1.3  1  MTS              Methyltransferase small domain
        0.1   12.0   0.0       0.14   11.5   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   7.9e-19     2e-15      18     154 ..      57     199 ..      46     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 7.9e-19
  Methyltransf_16  18 grkvWdaavvlvkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDlee..llellkknielnknalkskvkvevLd 106
                      +  +W +++  + +l     ++       e ++l+ lELGsG+Gl  +++a+++ ++ v+ +D+++  l+  l +n++ n+  ++++ +v +  
       CDO69356.1  57 ATSIWRSSIYIADHLRDLGLDHhvnRAGVEDRPLTLLELGSGAGLPSIIIAKMYRDVLVTASDYPDesLISTLSENVKRNE--VSDRCRVVPYA 148
                      789**************9999887766788999*******************************877799*********66..*********** PP

  Methyltransf_16 107 Wgeeleedllek.eevDlilaaDcvYledslelLvkvLkellkkesk..vl 154
                      Wg +  + l ++   +D++laaD +++ d  +  +++L+  lk +++  v+
       CDO69356.1 149 WGSDPSPLLSQTcGGFDIVLAADTLWNLDLHDIFIDTLRFTLKRSPDarVY 199
                      ***9877766542469**********************9999888876644 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.3e-06     0.024      51      73 ..      91     113 ..      49     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.3e-06
                 .EEEETSTTTTTHHHHHHH-TTS CS
        GidB  51 kviDvGsGaGlPGipLaiarpel 73 
                 +++ +GsGaGlP+i++a +  ++
  CDO69356.1  91 TLLELGSGAGLPSIIIAKMYRDV 113
                 5899************9776655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-05     0.084       1      90 [.      93     187 ..      93     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg......ssfDlvvasnvlhhlkdirevldn 88 
                      Le+G+G G  +  +++  +d+ +t++D+  +++       + ++n+  +++++     ++++++      + fD+v+a+++l +l+  + ++d 
       CDO69356.1  93 LELGSGAGLPSIIIAKMYRDVLVTASDYPDESL-ISTLSENVKRNEVSDRCRVVPYAWGSDPSPllsqtcGGFDIVLAADTLWNLDLHDIFIDT 185
                      8**************************988888.555555555566788999999998877777999999***********9998444444444 PP

  Methyltransf_12  89 ir 90 
                      +r
       CDO69356.1 186 LR 187
                      44 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.5e-05     0.065     109     155 ..      97     144 ..      87     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.5e-05
                 -TTTCCHHHCCHHTTSSEEEEEES-HHH.HHHHHHHHHHTT-TTCEEE CS
      Met_10 109 AGiGpfaipiakyskakrvlaidlnPes.vkylkeniklNkvekvvkp 155
                  G G  +i iak+ +++ v a d   es +  l en+k+N+v+++ ++
  CDO69356.1  97 SGAGLPSIIIAKMYRDVLVTASDYPDESlISTLSENVKRNEVSDRCRV 144
                 799999******************99884689***********98765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.4e-05      0.11       2      78 ..      93     177 ..      92     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.4e-05
                      EEET-TTSHHHHHHHCTSTSSEEEEEES.SHHHHHHHHHHHHHTTT..TEEEEESBCCG.....BSSSTTTEEEEEEESTGGGSS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDi.seemleaareraeeegl..nvefvqgdaed.....lpfedgsfDlvvssgalhhls 78 
                      L+lG G G  ++ +ak + +  vt+ D+ +e+++ +  e+++++++  ++++v     +     l++  g fD+v+++ +l  l+
       CDO69356.1  93 LELGSGAGLPSIIIAKMYRDVLVTASDYpDESLISTLSENVKRNEVsdRCRVVPYAWGSdpsplLSQTCGGFDIVLAADTLWNLD 177
                      89***************989*******95677789999***99999998888776663323344567888999999976654444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.7e-05     0.095      35      82 ..      92     142 ..      78     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
                 EEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHH.HHHHHHHHHTTGC..E CS
         MTS  35 vlDlGcGaGvlgaalakespeaevtlvdvdarAl.esakenleankle..v 82 
                 +l lG+GaG+ ++ +ak++ ++ vt+ d   ++l     en+++n+++  +
  CDO69356.1  92 LLELGSGAGLPSIIIAKMYRDVLVTASDYPDESLiSTLSENVKRNEVSdrC 142
                 789*************************977775156799*****998444 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.6e-05      0.14     164     216 ..      91     145 ..      76     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.6e-05
        PrmA 164 evlDvGtGSGiLaiaaakLgak.kvvavDi.DevAvkvakeNaelNkveakleva 216
                 ++l +G G+G+ +i  ak+  +  v+a D+ De  ++   eN+++N+v+++++v 
  CDO69356.1  91 TLLELGSGAGLPSIIIAKMYRDvLVTASDYpDESLISTLSENVKRNEVSDRCRVV 145
                 7899**********99998765268899*85777788889**********99883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2035.39
//
Query:       CDO69357.1  [L=498]
Description: hypothetical protein BN946_scf184746.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-42  143.9   0.0    2.6e-37  128.6   0.0    2.4  2  Pkinase          Protein kinase domain
    2.3e-17   63.2   0.0    3.3e-17   62.6   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    1.4e-06   28.5   0.1      3e-06   27.4   0.1    1.5  1  APH              Phosphotransferase enzyme family
    0.00024   20.1   0.0    0.00042   19.4   0.0    1.3  1  Haspin_kinase    Haspin like kinase domain
    0.00026   20.4   0.0    0.00046   19.6   0.0    1.3  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00068   19.0   0.0     0.0014   18.0   0.0    1.4  1  Kinase-like      Kinase-like
  ------ inclusion threshold ------
      0.021   13.6   0.0      0.035   12.9   0.0    1.3  1  Pkinase_fungal   Fungal protein kinase
       0.22   10.6   0.0       0.34    9.9   0.0    1.2  1  Seadorna_VP7     Seadornavirus VP7
       0.23   10.4   0.0       0.35    9.8   0.0    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   1.3e-40   2.6e-37       5     169 ..      97     302 ..      93     312 .. 0.94
   2 !   13.2   0.0   2.1e-05     0.041     224     264 .]     329     372 ..     302     372 .. 0.67

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 1.3e-40
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                  klG+G+ G+Vy + +  ++++ A+K+i+k+  + ++   v++E ++ ++l        +++v l ++fe++d++y++++y + g+l+++++r+g+++e
  CDO69357.1  97 CKLGRGGHGTVYLVEDIVSNRHLAMKVIEKNGLRLREYPVVFEEQAVSRTLPtvvevgQSRVVPLQGSFEDSDNFYFLTDYYPRGDLMKWMKRHGKVPE 195
                 69*******************************999997777777777765444445599*************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...................................BCTTTSCG CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...................................ltsfvgts 161
                 ++a+ +++++l  le+lH+++i+HrD+KpeNiLide+g++ +tDFG+++ ++++ +                                   ++s vgt+
  CDO69357.1 196 AQARLWCAELLVTLEHLHRRRIVHRDIKPENILIDENGHIALTDFGISRAFKREDNgrpwksvhpwgrrasleqasphqrdkagrgtdadvTHSLVGTP 294
                 *****************************************************999******************************************* PP

                 GGS-HHHH CS
     Pkinase 162 eYlAPEvl 169
                  Y+APEv 
  CDO69357.1 295 GYVAPEVY 302
                 ******95 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.1e-05
                 H...HHHTTS-HHHHHHHHH...HT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 224 keklpeaseiseeakdllkk...llkkdpkkRltaeellqhpyl 264
                   +++    +++ea+dll+k   +l+kdp+kR t+++l++h+++
  CDO69357.1 329 PADFELYGVVDPEARDLLTKfaqMLEKDPRKRGTIRKLKKHRWF 372
                 334444445588999998643339*******************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.6e-20   3.3e-17       6     158 ..      98     251 ..      94     368 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.6e-20
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEE...ESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKt...lkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  klG+G  G+V+  +   ++++  +kV+ K    l+e     e++++ + + +  ++ + ++v l g   ++++ +++t+y + GdL k ++++   k+
   CDO69357.1  98 KLGRGGHGTVYLVEDIVSNRHLAMKVIEKNglrLREYPVVFEEQAVSRTLPTVVEVGQSRVVPLQGSFEDSDNFYFLTDYYPRGDLMKWMKRH--GKV 193
                  799999***9999888556666666666642113444444567888888889999999**********************************9..888 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSE CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekdde 158
                     +   +++++   +e+L+++++vHrd+   N+L++en ++ ++DfG++r+ +++d+
   CDO69357.1 194 PEAQARLWCAELLVTLEHLHRRRIVHRDIKPENILIDENGHIALTDFGISRAFKREDN 251
                  8888888999******************************************977766 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.5e-09     3e-06     124     195 ..     178     242 ..     158     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.5e-09
                 CHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 124 ellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 ++  +l+++   +++ ++++ +++l+ + l   +++l+   +++++H+D++p N+l+d ++g++ ++ Df+ 
  CDO69357.1 178 YPRGDLMKW--MKRHGKVPEAQARLWCAELLVTLEHLH---RRRIVHRDIKPENILID-ENGHI-ALTDFGI 242
                 566778888..677777777666777766667777777...9****************.99998.9999985 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.1e-07   0.00042     213     259 ..     201     248 ..     138     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.1e-07
  Haspin_kinase 213 wqivkiLyvaEt..kfeFEHRdLhldniLvdknlnvtlidlklsRless 259
                    w +++ L   E   + +  HRd++ +niL+d+n+++ l d+ +sR+ ++
     CDO69357.1 201 W-CAELLVTLEHlhRRRIVHRDIKPENILIDENGHIALTDFGISRAFKR 248
                    5.66666666651134577**************************9744 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-07   0.00046     104     169 ..     182     243 ..     176     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.3e-07
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                 dL ++++++ +++e+  r    ++  + + lhr+ + H+d+ + nil+++++    +i+l D+  +
  CDO69357.1 182 DLMKWMKRHGKVPEAQARLWCAELLVTLEHLHRRRIVHRDIKPENILIDENG----HIALTDFGIS 243
                 89999999999999999999999****************************9....9999999644 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     7e-07    0.0014     149     189 ..     202     241 ..     181     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7e-07
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                    ++l+    +L+ + +vh +++++n+l de+g + l++f+
   CDO69357.1 202 C-AELLVTLEHLHRRRIVHRDIKPENILIDENGHIALTDFG 241
                  3.55555569*****************************96 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05     0.035     318     383 ..     208     299 ..     202     306 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilit......................dskke...gerkglLiDLDlakelsddssesga.....rertGTleFma 382
                     +++ L+   +i+HrDi  +Nili                                ++ g  + L+ a+ +++d++ +g      +  +GT+ ++a
      CDO69357.1 208 TLEHLH-RRRIVHRDIKPENILIDenghialtdfgisrafkredngR---PwksVHPWGRRASLEQASPHQRDKAGRGTdadvtHSLVGTPGYVA 298
                     678899.9***************955555555555555554432222...133355566666666666666655555333344466666666666 PP

  Pkinase_fungal 383 i 383
                      
      CDO69357.1 299 P 299
                     5 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00017      0.34     153     186 ..     208     239 ..     202     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
  Seadorna_VP7 153 dLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                    L+++h     ++h D++pen++ D+nG + l D
    CDO69357.1 208 TLEHLH--RRRIVHRDIKPENILIDENGHIALTD 239
                   566666..7899******************9998 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00018      0.35     287     315 ..     205     232 ..     199     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
  Pox_ser-thr_kin 287 LyikiyelpdcenflhvDlkPdniLifds 315
                      L++ + e   ++  +h D+kP+niLi ++
       CDO69357.1 205 LLVTL-EHLHRRRIVHRDIKPENILIDEN 232
                      67777.55578999***********9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3766.75
//
Query:       CDO69358.1  [L=99]
Description: hypothetical protein BN946_scf184746.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-29   99.8   4.4    9.9e-29   99.8   4.4    1.6  2  Cript          Microtubule-associated protein CRIPT
  ------ inclusion threshold ------
       0.21   12.0  18.7        2.6    8.5  18.7    2.1  1  DUF2039        Uncharacterized conserved protein (DUF2039)
        1.6    8.6  16.4        3.6    7.4   5.9    3.2  3  zinc_ribbon_2  zinc-ribbon domain
        1.7    8.8   7.3        0.6   10.2   2.9    2.0  2  DUF1272        Protein of unknown function (DUF1272)
        2.8    7.6   8.1        6.1    6.5   0.0    3.0  3  zf_UBZ         Ubiquitin-Binding Zinc Finger
        4.5    7.5  12.7        1.5    9.0   4.7    2.9  3  NOB1_Zn_bind   Nin one binding (NOB1) Zn-ribbon like


Domain annotation for each model (and alignments):
>> Cript  Microtubule-associated protein CRIPT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4      0.51   1.5e+03      47      56 ..       3      12 ..       1      13 [. 0.77
   2 !   99.8   4.4   3.3e-32   9.9e-29       1      88 [.      11      97 ..      11      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.51
       Cript 47 CkiCktkveq 56
                Ck+C +k+++
  CDO69358.1  3 CKKCENKTSK 12
                9999988865 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 3.3e-32
       Cript  1 tklatpdkykkkasntlgetggrkigenkll....skkkrfnpyaaysskCkiCktkveqkgakYCqkCaYkkgiCamCGkklldtksskqs 88
                +kla+pd++k+ +++   ++g+rkigenkll    s+k+rf+py+    kCk Ck++v+q++akYC+ CaYk+g+Ca+CGk++ldt+ + +s
  CDO69358.1 11 SKLAAPDPFKSTTQA--IKEGSRKIGENKLLgrpgSSKNRFQPYQG---KCKDCKSTVTQNKAKYCHGCAYKRGVCAICGKQVLDTSGYVMS 97
                69********77544..35777*********98876666******9...9*************************************99876 PP

>> DUF2039  Uncharacterized conserved protein (DUF2039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  18.7   0.00086       2.6      47      88 ..      46      86 ..       1      87 [. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00086
     DUF2039 47 kYkaltkkkkCvkCeektvkkaYhkiCkkCakekkvCakCsk 88
                k + +  ++kC+ C + tv++   k C+ Ca ++ vCa C+k
  CDO69358.1 46 KNRFQPYQGKCKDC-KSTVTQNKAKYCHGCAYKRGVCAICGK 86
                555666789*****.89***********************98 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.9     0.086   2.6e+02       2       8 ..       3       9 ..       2      12 .. 0.81
   2 ?    7.4   5.9    0.0012       3.6       1      21 [.      55      76 ..      55      77 .. 0.91
   3 ?    5.5   0.0    0.0048        14       2      13 ..      81      92 ..      80      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.086
  zinc_ribbon_2 2 CpnCGae 8
                  C++C ++
     CDO69358.1 3 CKKCENK 9
                  9***887 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
  zinc_ribbon_2  1 fCpnCGael.qdnakFCpyCGt 21
                   +C+ C  ++ q++ak+C  C +
     CDO69358.1 55 KCKDCKSTVtQNKAKYCHGCAY 76
                   8********88********965 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0048
  zinc_ribbon_2  2 CpnCGaelqdna 13
                   C  CG+++ d++
     CDO69358.1 81 CAICGKQVLDTS 92
                   888****99976 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.22   6.7e+02      32      38 ..       3       9 ..       1      18 [. 0.54
   2 ?   10.2   2.9    0.0002       0.6       7      41 ..      55      90 ..      52      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
     DUF1272 32 CaeCaee 38
                C++C ++
  CDO69358.1  3 CKKCENK 9 
                4444443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0002
     DUF1272  7 nCecCdkdlppdsee.aricsyEctFCaeCaeevle 41
                +C+ C+ ++ +++++    c+y    Ca C ++vl+
  CDO69358.1 55 KCKDCKSTVTQNKAKyCHGCAYKRGVCAICGKQVLD 90
                8*******9987654267899*********999986 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.14   4.1e+02       4      10 ..       2       8 ..       1      13 [. 0.81
   2 ?    3.6   0.9     0.017        51       4      15 ..      55      66 ..      53      72 .. 0.79
   3 ?    6.5   0.0     0.002       6.1       4      15 ..      80      91 ..      78      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
      zf_UBZ  4 lCerCgk 10
                +C++C  
  CDO69358.1  2 VCKKCEN 8 
                7****75 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.017
      zf_UBZ  4 lCerCgkeipes 15
                 C++C++++ ++
  CDO69358.1 55 KCKDCKSTVTQN 66
                6******99876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.002
      zf_UBZ  4 lCerCgkeipes 15
                +C+ Cgk+++++
  CDO69358.1 80 VCAICGKQVLDT 91
                7*******9875 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.12   3.4e+02      26      33 ..       3      10 ..       1      16 [. 0.82
   2 ?    9.0   4.7   0.00051       1.5       5      31 ..      50      76 ..      47      78 .. 0.87
   3 ?    1.5   0.1      0.11   3.3e+02      25      36 ..      80      91 ..      76      99 .] 0.73

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
  NOB1_Zn_bind 26 CpkCGnkt 33
                  C+kC nkt
    CDO69358.1  3 CKKCENKT 10
                  99999988 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00051
  NOB1_Zn_bind  5 kswvlrChaCfkvtkdmtkkFCpkCGn 31
                  + +  +C  C +++++++ k+C+ C  
    CDO69358.1 50 QPYQGKCKDCKSTVTQNKAKYCHGCAY 76
                  668889*******************76 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
  NOB1_Zn_bind 25 FCpkCGnktLkr 36
                   C  CG++ L+ 
    CDO69358.1 80 VCAICGKQVLDT 91
                  699999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 645.61
//
Query:       CDO69359.1  [L=176]
Description: hypothetical protein BN946_scf184746.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   12.9   0.2      0.027   12.5   0.2    1.0  1  IgaA      Intracellular growth attenuator protein IgaA
      0.095   12.9   1.5       0.27   11.4   1.5    1.7  1  Tat       Transactivating regulatory protein (Tat)
       0.16   11.0   0.0       0.23   10.5   0.0    1.2  1  DUF3086   Protein of unknown function (DUF3086)


Domain annotation for each model (and alignments):
>> IgaA  Intracellular growth attenuator protein IgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   4.5e-06     0.027     644     697 ..     101     152 ..      94     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 644 epdavtlwrylgttlLllvlllllilnavlllrrlrknrqRleeiqrYYdkcfn 697
                 +p +v +w+++ tt+ +l+ +  +++ + l+ +rlr   qR ++i++YY++ ++
  CDO69359.1 101 TPRHVEVWQVVITTISILAAMCATVVVLTLVHKRLRL--QRYRQIREYYEEQIS 152
                 688899**********999998888877777777765..67779******9875 PP

>> Tat  Transactivating regulatory protein (Tat)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   4.6e-05      0.27      14      45 ..      57      92 ..      53      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
                B-S-SS---S--SCCHHTSS....HHHHHHCTT--- CS
         Tat 14 gsqpktactncyckkcsfhc....qvcfikkalGis 45
                g q   + t   ck   f+c    qvc  +k+lG+s
  CDO69359.1 57 GEQFSNSVTRHNCKTPQFYCdaglQVCIPTKSLGVS 92
                667778889999*******988889**********9 PP

>> DUF3086  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.9e-05      0.23     115     148 ..     135     168 ..     127     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
     DUF3086 115 klldqyrekPdyygppWqlrrtlepihaervedW 148
                   l++yr+  +yy +   lr+tl + ha   + +
  CDO69359.1 135 LRLQRYRQIREYYEEQISLRKTLAALHAAAADRY 168
                 5699***********************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1201.92
//
Query:       CDO69360.1  [L=81]
Description: hypothetical protein BN946_scf184961.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 597.87
//
Query:       CDO69361.1  [L=2130]
Description: hypothetical protein BN946_scf184961.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-30  106.0   0.0    3.1e-30  105.2   0.0    1.2  1  Sec7      Sec7 domain
    3.3e-14   52.2   2.9    6.3e-14   51.3   2.9    1.5  1  GATA      GATA zinc finger
    1.4e-11   44.0   0.7      3e-11   42.9   0.7    1.6  1  DUF1752   Fungal protein of unknown function (DUF1752)


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   5.3e-34   3.1e-30      43     159 ..    1862    1979 ..    1837    1989 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 5.3e-34
                  TCCS-HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SSHHHHHHHHHHHHHHHHHTTCTCG.-SHHHHHHHHHHHHHHHHH CS
        Sec7   43 tpgldkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgEaqkierilekFaekyfeqnpevf.enadavfvLaysiimLntd 138 
                   + l k k+ e+lg ++++nk  l++++++fdfs+lr+d+A R+++ ++ l+ E q+++rile+Fa++y e np+++  +a +v+ ++ys+++Lntd
  CDO69361.1 1862 DEFLPKDKIAEWLGGQSRINKAALRHYMNFFDFSNLRIDQAFRKLCGKLYLKAETQQVDRILEEFARRYWECNPTSIlGSASVVHAVSYSVLLLNTD 1958
                  37799********************************************************************987779****************** PP

                  HC-TTSCCS--HHHHHHCTTT CS
        Sec7  139 lhnpqvkkkmtledFiknnrg 159 
                  lh  ++ ++m++++F++n+  
  CDO69361.1 1959 LHVAELASRMSKNQFVRNTMT 1979
                  ******************975 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   2.9   1.1e-17   6.3e-14       1      32 [.     989    1019 ..     989    1023 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.1e-17
        GATA    1 CsnCgttkTplWRrgpdgnksLCnaCGlyykk 32  
                  C+nC+tt TplWRr+p+g++ LCnaCGl+y +
  CDO69361.1  989 CTNCQTTITPLWRRDPEGQP-LCNACGLFYSH 1019
                  ********************.********965 PP

>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.7   5.1e-15     3e-11       1      27 [.     451     477 ..     451     478 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 5.1e-15
     DUF1752   1 lWkyytkkkkdlpngeRLENlSWRlWn 27 
                 +Wk+y+++k +lp+++R+ENl+WR+++
  CDO69361.1 451 VWKMYARQKATLPHAQRMENLTWRMMA 477
                 6*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.28s 00:00:01.30 Elapsed: 00:00:00.83
# Mc/sec: 7737.17
//
Query:       CDO69362.1  [L=422]
Description: hypothetical protein BN946_scf184961.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-80  269.4  10.7    5.2e-80  269.2  10.7    1.0  1  Asp              Eukaryotic aspartyl protease
    1.3e-11   45.1   8.3    6.2e-10   39.6   6.3    3.0  2  TAXi_N           Xylanase inhibitor N-terminal
     0.0039   17.7   0.0        1.2    9.7   0.0    2.9  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0051   17.4   0.1      0.085   13.5   0.1    2.6  2  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.035   13.9   0.4       0.31   10.8   0.4    2.2  1  TAXi_C           Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.2  10.7   1.4e-83   5.2e-80       2     314 ..     113     420 ..     111     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 269.2 bits;  conditional E-value: 1.4e-83
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepgs 99 
                 ++g+i iGtp q+f ++fDTGS+dlWVps++c+ s+ c+++++y+p +Sst  +++ ++si+YGdg +vsG +++dtv+v+g++ knq f  +++ ++ 
  CDO69362.1 113 WAGNIAIGTPGQTFLIDFDTGSADLWVPSVDCT-STYCSKKHKYNPASSSTDARKSGTFSIQYGDGsTVSGPVYTDTVSVAGVKAKNQYFSPVSTLSS- 209
                 479*****************************9.99**********************************************************9999. PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEETTEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvtskgywqielesvtvggktvlcssg 198
                 +f + ++dGiLG++f++is  +++p+f++ +sqg +k+ vf++ l    ++g+e+ +Gg+D+s y+Gs+ y pvt +g+wqi   +v++g+ktv  +sg
  CDO69362.1 210 MFGSQSDDGILGMAFPAISNLKQSPFFNTAKSQGAVKSGVFGFKLA---KSGSELYLGGTDSSLYSGSIEYHPVTGSGFWQIANAKVNIGTKTV--QSG 303
                 577777***************************************7...99*******************************************..*** PP

                 EEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET..TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE...EECCTSSSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
         Asp 199 cqailDtGTsllalptsivekiakaigakkses..egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl...vseeegdlwiLG 292
                 +q i+D+GT+++++p s v+++ k+i ++k+ +  +g y   C+s    ++i f+ gg++ t+++ ++ + + +  ++qC+ ++       ++++w+LG
  CDO69362.1 304 IQTIIDSGTTIIYGPPSQVAAFYKNIPGSKVYDssNGFYSYPCNS--APSNIGFNWGGKTWTISAAKFNFGQIS--ATQCVGAIagqDLGLGSNTWLLG 398
                 **************************998765433899******7..899********************9997..469*****6655556889***** PP

                 HHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
         Asp 293 dvFlrsayvvfdldnnrvglAe 314
                 d F++++y+vf +d+n vg+A+
  CDO69362.1 399 DSFMKNVYSVFSFDKNSVGFAT 420
                 *********************7 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   6.3   1.7e-13   6.2e-10       4     177 ..     116     264 ..     113     265 .. 0.79
   2 ?   -0.1   0.0      0.26   9.2e+02       5      61 ..     293     351 ..     291     382 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.7e-13
      TAXi_N   4 sisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkac.easssaksgsssstceyeisygadgssssGvlatdtl 101
                 +i iGtp+q++++++DtGs  +Wv                          v c+s  C++  + +  ++s++ +++ +++i+yg dgs++sG + tdt+
  CDO69362.1 116 NIAIGTPGQTFLIDFDTGSADLWVPS------------------------VDCTSTYCSKKhKYNPASSSTDARKSGTFSIQYG-DGSTVSGPVYTDTV 189
                 689***********************........................9999****955467777779999999*******8.************** PP

      TAXi_N 102 tlsstdgksvkvpnlvfGCgksnlgglaa.gadGilGLGrgklSlvsqlaskg.......slgnkFsyCLssssssssgvlffG 177
                 ++      +vk +n  f+ +++ ++ + + + dGilG+++ ++S ++q    +         +++F+  L    ++s++ l +G
  CDO69362.1 190 SV-----AGVKAKNQYFSPVSTLSSMFGSqSDDGILGMAFPAISNLKQSPFFNtaksqgaVKSGVFGFKL----AKSGSELYLG 264
                 **.....89999******88866666655259************99884311111222345556666666....5555555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.26
      TAXi_N   5 isiGtppqp..lklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslC 61 
                 ++iGt +++  ++ ++D G  +++   ++  a +++  +     +s+ +   pc+s+  
  CDO69362.1 293 VNIGTKTVQsgIQTIIDSGTTIIYGPPSQVAAFYKNIPGSKVYDSSNGFYSYPCNSAPS 351
                 66776644422789999999999999999998888888888888899999999998765 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00034       1.2      37      89 ..     165     224 ..     117     224 .. 0.59
   2 ?    4.6   0.0     0.013        48      52      92 .]     360     404 ..     351     404 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00034
                      EB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEEESS.......SSEEEEHHH CS
  gag-asp_proteas  37 edkgkvevktangeveakrvrldsvkiggielrnvsavvlegel.......ddlLLGldf 89 
                      ++ g+++++ ++g++  ++v+ d+v++ g++++n  ++ ++          dd++LG+ f
       CDO69362.1 165 RKSGTFSIQYGDGSTVSGPVYTDTVSVAGVKAKNQYFSPVSTLSsmfgsqsDDGILGMAF 224
                      223455568888899999999999999999999985443332211123445888***976 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
                      T-EEEEEEEEEE.EETTEEEEEEEEEESS....SSEEEEHHHHHH CS
  gag-asp_proteas  52 eakrvrldsvkiggielrnvsavvlegel....ddlLLGldfLkr 92 
                      +++++  ++ ++g+i+++++  +++ ++l    ++ LLG +f+k+
       CDO69362.1 360 KTWTISAAKFNFGQISATQCVGAIAGQDLglgsNTWLLGDSFMKN 404
                      56778889999**********999998865666777******986 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   2.4e-05     0.085       8      90 .]     124     224 ..     117     224 .. 0.68
   2 ?    0.6   0.0      0.25     9e+02      10      37 ..     304     331 ..     289     344 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
  Asp_protease_2   8 kpvrfllDTGasttlispela......eklglkvreseltvrvsg......aggevkarlvrldslklggltlknvpalvld......lgeeidg 84 
                     +++   +DTG+  + +++         +k++ ++ +s+++ r sg       +g++ +  v  d+++++g+++kn+ ++ +       + +++dg
      CDO69362.1 124 QTFLIDFDTGSADLWVPSVDCtstycsKKHKYNPASSSTDARKSGtfsiqyGDGSTVSGPVYTDTVSVAGVKAKNQYFSPVStlssmfGSQSDDG 218
                     556666777777776665544333344555555555555544444222222799999999999*************777666666888899**** PP

  Asp_protease_2  85 lLGmdf 90 
                     +LGm f
      CDO69362.1 219 ILGMAF 224
                     ****87 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.25
  Asp_protease_2  10 vrfllDTGasttlispelaeklglkvre 37 
                     ++ ++D+G + ++ +p+ +++   +  +
      CDO69362.1 304 IQTIIDSGTTIIYGPPSQVAAFYKNIPG 331
                     4889******999998887766555544 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   8.5e-05      0.31      94     160 ..     352     419 ..     286     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.5e-05
                 -EEEEESSS-EEEE-GGGGEEE-SSSEEEE-EEE-..-S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  94 titlvleggaewtisgenllvkveggvvClafves..gvagesavviGglqlednllvFDleksrlgFs 160
                 +i ++   g++wtis++++   +   + C++ + +     g+++  +G   +++++ vF  +k+ +gF+
  CDO69362.1 352 NIGFNWG-GKTWTISAAKFNFGQISATQCVGAIAGqdLGLGSNTWLLGDSFMKNVYSVFSFDKNSVGFA 419
                 5555555.89**********9999***********65445788999**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2620.82
//
Query:       CDO69363.1  [L=339]
Description: hypothetical protein BN946_scf184961.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-71  241.0   4.5    2.1e-71  240.7   4.5    1.0  1  Peptidase_A22B  Signal peptide peptidase
    1.3e-06   28.1   2.4    3.1e-06   26.9   2.4    1.6  1  SPP             Signal-peptide peptidase, presenilin aspartyl


Domain annotation for each model (and alignments):
>> Peptidase_A22B  Signal peptide peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.7   4.5   2.4e-75   2.1e-71      20     280 ..       3     275 ..       1     279 [. 0.91

  Alignments for each domain:
  == domain 1  score: 240.7 bits;  conditional E-value: 2.4e-75
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX.........XXXXXXXXXXXXX------S- CS
  Peptidase_A22B  20 taslvlllLylffkslakeflvvlltvlivllgvvalasllsplvtrlflkkvelakvk.lefla.........ielkaaeivalllsiviavlw 104
                     ++s+vl++Lyl++k++ k++++ +l  +++++gv ++ + l +l + +++  ++++++  ++fl           +l++ +++++ +  +  +l+
      CDO69363.1   3 IGSAVLFGLYLIVKYFGKDWITWMLRWYFTIAGVGSVGKSLIALSR-WTIGSSRWHRFDkVQFLLlkgrrellsLSLRTPSLFLIPVGAIPSILY 96 
                     5799********************************9999987655.989999988875344444667777777889999999999999888988 PP

                     -XXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_A22B 105 llkrh.....wilndilglalailviellrlpslkvgalLLvglflYDifwVFgtdvmvevAkeldiPillklPqlsneieeaskfsiLGlGDiv 194
                     ++         il+d+l+l+++ + ++ll+l+s+k+g++LL+glflYDi+wVFgt+vmv+vA++ld+Pi+l  P+ s ++++++ f++LGlGD+v
      CDO69363.1  97 TFGDSatrrsAILTDLLALSFSHNALSLLKLDSFKTGCVLLSGLFLYDIWWVFGTEVMVKVATSLDVPIKLLWPK-SLTFSTERGFTMLGLGDVV 190
                     7654445557*****************************************************************.999**************** PP

                     XXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_A22B 195 lPGllialllrfdiskkkttaeskeaqgkYfvvtlvaYvlgLlitivalalfkaaQPALLYlvPatllvllllallrgelkklwne 280
                     +PG++ia++lr+d+++  +++ s +   +Yf++tl aYvlgL +t+ +++++++aQPALLYl Pa++ + l +al+rge+k+ w+ 
      CDO69363.1 191 IPGMFIAIALRYDYHRAMQQK-SARVSKVYFFATLTAYVLGLSTTMTVMHVWRKAQPALLYLSPACITSFLAIALARGEFKEAWSW 275
                     ***************999986.788889********************************************************86 PP

>> SPP  Signal-peptide peptidase, presenilin aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   2.4   3.5e-10   3.1e-06     138     281 ..     132     266 ..     102     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.5e-10
         SPP 138 pavvllialavydaisvyktkhmialaegvvdlklPillvvPetlaysfveeafeeaeeaearnvlfiGlGdavlPsilvvsaavf.......leshil 229
                 +  vll  l +yd   v++t+ m+ +a     l++Pi l+ P++l++s          e   r   ++GlGd+v+P ++++ a  +        +s  +
  CDO69363.1 132 TGCVLLSGLFLYDIWWVFGTEVMVKVAT---SLDVPIKLLWPKSLTFST---------E---RGFTMLGLGDVVIPGMFIAIALRYdyhramqQKSARV 215
                 56799******************99886...689***********9984.........2...23479*************9987661111111344445 PP

         SPP 230 agle.lavllalaGtlvGllvlsilvlrgrpaaGlPllnsGaiaGfligvlaa 281
                 + +  +a+l+a + +l   + ++ +    ++++ l +l   +i  fl  +la 
  CDO69363.1 216 SKVYfFATLTAYVLGLSTTMTVMHV--WRKAQPALLYLSPACITSFLAIALAR 266
                 4443256777777777666666664..4689999*************888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2304.93
//
Query:       CDO69364.1  [L=395]
Description: hypothetical protein BN946_scf184961.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-70  237.3  38.1    3.1e-70  237.0  38.1    1.0  1  SLAC1     Voltage-dependent anion channel


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0  38.1   1.7e-74   3.1e-70      31     324 .]       6     325 ..       2     325 .. 0.95

  Alignments for each domain:
  == domain 1  score: 237.0 bits;  conditional E-value: 1.7e-74
       SLAC1  31 islilfllalvlfllllvlyllrfilypeavrkelrhpveslflgtfpmglltilnglllvl.pg.....ewlatlalvllWigvllslltavvvvfll 123
                 +  i+f+l+l+lf+++ +++++r+i++p+++  +++hp++sl++gt+pmgl t+ln+++  l ++     + +++++++l+W++vlls+++a+ +v+++
  CDO69364.1   6 FTFIFFFLNLALFIVFNIFTIARYIIFPDTWSLMIHHPIQSLYIGTYPMGLSTLLNIAVGFLyQKyqfggKGFLYAIWALWWFDVLLSVACAFELVHIM 104
                 5679********************************************************8877789999*********999***************** PP

       SLAC1 124 ftekeekleeitpawllpvvgllvvallgallaes...qnpslqllgilvvslllwglGlllalvlfvlylyrlithklppaelrptlfiplGplgqga 219
                  t++e++l+ +t+ wllpvv+l+v++++g+ +a+     +p ++ll +l vsl+l+++G+ la++++++yl rli+h++p+ + + ++fiplGp++qg+
  CDO69364.1 105 KTRHEHSLNRLTAHWLLPVVTLIVISSTGGIMAPAlvkLHPGQALL-TLTVSLVLVSIGVGLAMMILTMYLLRLIVHGVPQDANVMSVFIPLGPMAQGG 202
                 9999667*****************************9877777888.**************************************************** PP

       SLAC1 220 lallllgkaapk................aaevlkvlalllalflwglglfwllvavlsvls....lpvrlkfslswWaftFPlgalalatielgkales 298
                 +++lllg+ +++                +++++ v++l++al+lw+l+++w+++a+ +v +       r  f+ ++W+++FP+g++a  ti+l+++++s
  CDO69364.1 203 YCILLLGQGYRQvlplnygdshvlrqsnVGDIIAVISLATALVLWSLATMWMIYALRAVTEvvprT--RIPFKQTFWGLIFPNGVYANLTIQLYRTVDS 299
                 **********999************************************************64440..666**************************** PP

       SLAC1 299 eafkvlgtillvllvlvwllvlvgtl 324
                 ++f+v+gti++++ +++w+lv+++tl
  CDO69364.1 300 PFFRVWGTIYSIATLILWTLVFLRTL 325
                 ************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2702.41
//
Query:       CDO69365.1  [L=423]
Description: hypothetical protein BN946_scf184961.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-71  239.9  51.4    4.6e-71  239.7  51.4    1.0  1  SLAC1     Voltage-dependent anion channel


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.7  51.4   2.5e-75   4.6e-71       1     323 [.      19     369 ..      19     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 239.7 bits;  conditional E-value: 2.5e-75
       SLAC1   1 hftpawFaivMGtgilalllkalp....arglriislilfllalvlfllllvlyllrfilypeavrkelrhpveslflgtfpmglltilnglllvl.pg 94 
                 hft+aw+a++MGtg+++ ll++lp    +  l++++l++fl++lvlf++++++++lr+i++pe ++ +l hp++slf+g+fpmg++t++n +l++  ++
  CDO69365.1  19 HFTWAWYAVIMGTGVVSALLHNLPyyndSLALKVAALVVFLVNLVLFVFVCTCTILRYIMFPEIWHMMLAHPAQSLFIGCFPMGAATLINSALNINqDW 117
                 8*******************548887543778889***********************************************************77666 PP

       SLAC1  95 ....ewlatlalvllWigvllslltavvvvfllftekeekleeitpawllpvvgllvvallgallaes.qnpslqll.gilvvslllwglGlllalvlf 187
                     e ++++++ ++W++ ++s ++a+++ + ++ ++ +++ +++++wllpvv+l+v++++g+ll     ++s+ ++  +  +s++++ +Gl +al+++
  CDO69365.1 118 gfggEAFLWTLWGFWWLDSAVSYIIAFGMLYTMMVRQDHSIPKMSAVWLLPVVTLIVASSSGGLLSHAlLPHSTTIAlVTTGFSFTMVIIGLGFALMMI 216
                 888899*******888***************998888556*************************6668444433336699****************** PP

       SLAC1 188 vlylyrlithklppaelrptlfiplGplgqgalallllgkaapk...............aaevlkvlalllalflwglglfwllvavlsvls......l 265
                 ++yl rli+h++p+++l+ + fi lGplgqg+++ll  g+++++               a++++ + ++l a++l++lg+ w+l+a++s+ +      +
  CDO69365.1 217 TVYLLRLILHGPPDPSLILSAFITLGPLGQGGFSLLVNGQDLSEilplhmgdefptvalAGQMVFAGCFLGAFILFSLGVAWILLALISIGHvrasskI 315
                 ***********************************999999988899999999999*999999999************************996665555 PP

       SLAC1 266 pvrlkfslswWaftFPlgalalatielgkaleseafkvlgtillvllvlvwllvlvgt 323
                      fs+++W+++FP+g++al +++l+k l+s+ f+++g++++ +++l+w++v+++ 
  CDO69365.1 316 ----PFSMAYWGLIFPNGVFALLCVQLAKVLDSGVFRAIGAAWTGVVFLLWVTVFARS 369
                 ....5**************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3010.28
//
Query:       CDO69366.1  [L=556]
Description: hypothetical protein BN946_scf184961.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-37  127.3   0.0    1.8e-36  126.2   0.0    1.5  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0     1e-40   1.8e-36       2     248 ..     134     526 ..     133     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 1e-40
                     EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------.EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCH CS
  PI3_PI4_kinase   2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktys.viplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkk 95 
                     s+g+y+++        +v+vfk++dee+++  npk +k+ +++++ +ip+gr c+i++l ++se+aasllde+l+ + vp+t  v  +++a+ ++
      CDO69366.1 134 SSGSYFARAKVDGRVQTVAVFKPKDEEPYGRLNPKTTKWLHRQFRwIIPFGRACLIPNLSYISEAAASLLDERLNIHIVPRTELVSLSSPAFFYD 228
                     67888887777666779***************************9568**************************998888888888888888888 PP

                     CCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHH............................................................. CS
  PI3_PI4_kinase  96 klkkekklkfekrtalkpksgllqeFvkkspsae............................................................. 129
                      l++      +k + l+ k g+ q+F   +++a                                                              
      CDO69366.1 229 WLDRNA---AKKGKPLPEKIGSMQYFLHGYTDASdflrkhpwpgraisdtfdddshrkggyykkfmsavsivcgktgaeeevyddddqdddrily 320
                     887666...5889999*****************99************************************************************ PP

                     ...........HHHHH.HHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTS........................................... CS
  PI3_PI4_kinase 130 ...........ewlea.rkqFvrslaklsvldyilgngDRhldNilvdktsg........................................... 169
                                 w+ a  ++F+++l+kl++ldy++ n+DR++dN +++  +g                                           
      CDO69366.1 321 dasedrsgqpfHWTPAlQDNFREELEKLVILDYLMLNTDRGADNYMIKYCEGdhskslvdvapsrtsrpempmmtelrrtdtnasghsipgmstp 415
                     *********998888879*****************************85555677799999999******************************* PP

                     ....................EEEESSTTTCC....TCSHCSSSS.....-.SSS..SS.S-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHH CS
  PI3_PI4_kinase 170 ....................klihIDfGlil....pdewkllpf.....pqekv..Pf.rltrelvlaidpskdeglfresceealealrrdqnl 232
                                         ++++ID+ l++    p+ w+ +++     p   +  Pf + tr+++l++  +++  ++ e+ +e+++++  d ++
      CDO69366.1 416 pmysqqyagssvpytkqphiHIAAIDNSLSFphehPKGWRSYTYgwlylPVTIIgrPFsQKTRDHFLPL--LTSKTWWAETTYELRKLFAVDPDF 508
                     *******************************8877778999999*****7333377*************..************************ PP

                     HHHHHHH..HHHHHCCSS CS
  PI3_PI4_kinase 233 ltrllkk..avkdglilw 248
                       +++    av +g++++
      CDO69366.1 509 HPKMFRRqlAVIKGQAWN 526
                     999998777888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3710.48
//
Query:       CDO69367.1  [L=67]
Description: hypothetical protein BN946_scf184961.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 512.45
//
Query:       CDO69368.1  [L=404]
Description: hypothetical protein BN946_scf184961.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-13   48.9   0.0      2e-05   24.3   0.0    2.9  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    0.00038   20.5   0.0    0.00073   19.6   0.0    1.4  1  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.2e-08    0.0002       1      64 [.     133     203 ..     133     205 .. 0.88
   2 !   24.3   0.0   2.2e-09     2e-05      12      69 ..     306     360 ..     305     361 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.2e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEE.......EEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiks.......iklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 ++V++Lppd++ +e+ + F+kfG i++       +kl+   +g+  g a V + ++e+ + A+  l+  +l
  CDO69368.1 133 VYVTGLPPDTDMDEVAARFGKFGLIEEddegnpkVKLYARDDGSFSGDALVVYFKEESVDLAITMLDDAEL 203
                 8************************9655555557777779**********************99998765 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  12 eeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +e+++e  s  G+++++ l+ +    + g+  V+F+++ +A++++ ++ng+ + gr++
  CDO69368.1 306 KEDVREECSTLGEVTNVVLYDE---EPEGIMTVKFKDPLSAQACVLKMNGRFFAGRRI 360
                 5899****************97...*******************************98 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   8.2e-08   0.00073       3      67 ..     132     195 ..     130     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 8.2e-08
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLl 67 
                  v+v GlP+D + +e+ a f++fg +  d  ++++ k +a++   + +g + +v+ +e+sv   +
  CDO69368.1 132 AVYVTGLPPDTDMDEVAARFGKFGLIEEDDEGNPKVKLYARD-DGSFSGDALVVYFKEESVDLAI 195
                 59**********************************999986.66789************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2841.93
//
Query:       CDO69369.1  [L=183]
Description: hypothetical protein BN946_scf184961.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.6   0.9        0.1   12.5   0.3    1.9  2  CI-B14_5a  NADH:ubiquinone oxidoreductase subunit B14.5a (Com


Domain annotation for each model (and alignments):
>> CI-B14_5a  NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   5.7e-06       0.1      40      75 ..      65     101 ..      54     126 .. 0.68
   2 ?   -1.2   0.0      0.11   1.9e+03      75      95 ..     138     158 ..     119     159 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-06
   CI-B14_5a  40 pshklsanyYytRDaRRevappivvvssqkkllae.k 75 
                 +++  ++n Y +RD RR     +vv++ + ++l   +
  CDO69369.1  65 KASDPAQNPYWKRDVRRAYPQRSVVTQAELATLLLdH 101
                 5566689**********99999999888776554322 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.11
   CI-B14_5a  75 kssseaekaaakkpvtPGkky 95 
                  +s++++ +++k p+tP+  y
  CDO69369.1 138 ITSARKAYSENKLPPTPAIAY 158
                 345566666777778887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1410.18
//
Query:       CDO69370.1  [L=264]
Description: hypothetical protein BN946_scf184961.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2020.55
//
Query:       CDO69371.1  [L=478]
Description: hypothetical protein BN946_scf184961.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-72  244.2   3.5    4.1e-72  243.9   3.5    1.1  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9   3.5   2.3e-76   4.1e-72       5     405 ..      49     452 ..      45     472 .. 0.84

  Alignments for each domain:
  == domain 1  score: 243.9 bits;  conditional E-value: 2.3e-76
                    ST-SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT- CS
  Peptidase_S10   5 etvnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFS 100
                    +t+ + q sGY d +   ++s+++wf+es+++p+++pl+lWL+GG G sS+ Gl++E+GP+r+n++ ++++ +npysWn+v+nvl++dqPvGvGFS
     CDO69371.1  49 TTPGVYQASGYGDLS--PSASMWFWFFESRHDPDNAPLTLWLEGGRGTSSMRGLFQENGPCRLNNE-SNSVTLNPYSWNEVSNVLYIDQPVGVGFS 141
                    4578899********..99*********************************************66.5**************************** PP

                    EETTSSGS--SHHHHHHHHHHHHHHHHHH..STCGTTSEEEEEEE.....TTHHHHHHHHHHHHHTHCCH--S.....STSEEEEEEEESE-SBHH CS
  Peptidase_S10 101 ysntksdvktddeevaedlyefLkkffek..fpeyksrdfyitGE.....SYaGhyvPalakeilkknkkekk.....kkinLkGlligNglidea 184
                    y +++       e++a+++++fL+ ff+   f +yk+++f i++E     SY+  y +++ + +l +n+k ++     ++inLk++ +g g+ d+ 
     CDO69371.1 142 YGDENVY---TGEDAAAQVWQFLQIFFSDrrFAKYKKSNFGIWTElrgtgSYGASYAAVFGNYFLGQNEKIANgtlsgSTINLKSIGVGGGVFDPL 234
                    ****887...6788999**********8666************9999999*********************999********************** PP

                    HHHCCHHHHHHHTTSSHHHHHHHHHHHHEET......HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETT.SSEEHHHCTTCCCCTTTT CS
  Peptidase_S10 185 eqvnsyvefayehgliseeeyeslkkacekk......eeleqesekcanllekaskvavekenkglnvynileecck.lkaelkksstdaqggedp 273
                    +q+++y ++a++    +  + +++ +++           ++q++++c+++  + +k++           +   +  +    +l  s ++   ++ +
     CDO69371.1 235 TQYPYYEDYAVSNPYAQLITARKVLDQTRLWfapadnGGIQQKIQNCYDTSYEDNKIV---------CWDAVLAANQgWVDTLYGSYNPLYVRSNE 321
                    ********99988777755555555555333444555667777777776666665544.........22222222111222233445566777788 PP

                    TCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHH..HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCC CS
  Peptidase_S10 274 ydesyvekylnkkeVrkalhvnasvkkweecndsv..feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrp 367
                    + + +v  +l++k+++ ++++     +++++n  v  + +++ ++ ++  + +++l+++++  l + Gd+D+  n+l++e +i +l  + +++ + 
     CDO69371.1 322 TYPPSVVPFLSRKDIQAKIGA---LSTYSDSNAFVayNLEEGGTWLRNHAQEITNLINQDISTLFWVGDADFYGNYLAQEVLIVALPTKYQNDIYL 414
                    8888999************96...689******99976677788889999********************************************** PP

                    CEEEETTTCESEEEEEEEETTEEEEEETT--SSHHHHS CS
  Peptidase_S10 368 wevspkkengqvaGyvkeyenltfltvkgaGHmvPedk 405
                    + + p ++ng++aG++ + + +++++v gaGH v  + 
     CDO69371.1 415 APHVPYNVNGHIAGQFLSVGTFSYVRVAGAGHQVGAYG 452
                    *********************************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 2791.02
//
Query:       CDO69372.1  [L=315]
Description: hypothetical protein BN946_scf184961.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2260.91
//
Query:       CDO69373.1  [L=303]
Description: hypothetical protein BN946_scf184961.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-63  213.7   0.1    2.2e-49  168.4   0.0    2.0  2  PP2C      Protein phosphatase 2C
     0.0034   17.3   0.3      0.049   13.6   0.3    2.5  2  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   3.3e-15   2.9e-11       7     110 ..       2     102 ..       1     107 [. 0.84
   2 !  168.4   0.0   2.5e-53   2.2e-49     114     258 .]     154     285 ..     147     285 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.3e-15
                 EECCCCSSHHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHH.HHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHC.HCCT-EEE CS
        PP2C   7 elqgarksmedahislanlesssgkssvsffavfdghggseaakyarehle.eilksqksfeelekleqalrksfladtdeelksskant.epsksGst 103
                 +++g r+smedah++  ++    g    ++f+vfdghgg  aak++++h + ++l   ++ +++ +  +al ++f+   d +l+++ a +   ++sG+t
  CDO69373.1   2 SMKGPRDSMEDAHTIVVPFA---GVHGQGLFGVFDGHGGKAAAKWCSQHFPrRLLNALRKNTSG-EILEALTNAFQD-VDAQLEQQWAESsGNMDSGTT 95 
                 68999************995...8999************************6666666666677.688999999999.777777755554488****** PP

                 EEEEEEE CS
        PP2C 104 avvalir 110
                 avva++r
  CDO69373.1  96 AVVAFLR 102
                 ****987 PP

  == domain 2  score: 168.4 bits;  conditional E-value: 2.5e-53
                 EEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TTEEEEEEE- CS
        PP2C 114 lyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpketeeqlvsaePdvtsvklteedefliLac 212
                 ly+AnvGD+ravLcr g+a+ +lt dH+++d++E+eRIe+agg ++  egrv g L  +RalGD e+ +      +v+  P++t+v+lt++defliLac
  CDO69373.1 154 LYCANVGDARAVLCRGGKAI-RLTHDHTAQDKNEAERIENAGGLII--EGRVDGRLIPTRALGDAEYNQ------YVTGTPYTTEVELTKKDEFLILAC 243
                 9*******************.*************************..********************8......************************ PP

                 HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCHC CS
        PP2C 213 dGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedni 258
                 dGlwdvl+dqeavd++r + +    p e+a  l++ea +r ++dn+
  CDO69373.1 244 DGLWDVLEDQEAVDFIRGTPD----PAEAAHGLLNEARRRHTSDNV 285
                 ******************999....9******************96 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.062   5.6e+02      40      72 ..      68     104 ..      29     120 .. 0.57
   2 !   13.6   0.3   5.4e-06     0.049     112     192 ..     224     292 ..     147     293 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.062
                 HHHHHHHHHHHCHCTTSTT.........TTCEEEEEEEETT CS
      SpoIIE  40 paevlkrlnralardleee........erfaTavlavydps 72 
                 ++++ + ++++l++    +        + ++Tav+a + ++
  CDO69373.1  68 LTNAFQDVDAQLEQ----QwaessgnmDSGTTAVVAFLRIE 104
                 33333333333333....23333666677778777775555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.4e-06
                 T-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEEEE CS
      SpoIIE 112 adyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveellelgsgeleDDitllvlrv 192
                 ++y+t+    ++++ l+l+ DG+ +  ++++      ++++        +++e ++ l++e+++   ++ +D +t+lv+r+
  CDO69373.1 224 TPYTTEVELTKKDEFLILACDGLWDVLEDQEAV----DFIRGTP-----DPAEAAHGLLNEARR---RHTSDNVTVLVVRL 292
                 566666666677889************777777....6666665.....49************9...479*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2263.66
//
Query:       CDO69374.1  [L=1093]
Description: Carbohydrate-Binding Module Family 1 / Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-156  521.3   0.0   6.3e-155  516.8   0.0    2.1  1  G_glu_transpept  Gamma-glutamyltranspeptidase
    1.3e-27   97.0   7.2    1.9e-27   96.5   7.2    1.2  1  Cellulase        Cellulase (glycosyl hydrolase family 5)
    3.4e-13   49.3  11.2    3.4e-13   49.3  11.2    1.8  2  CBM_1            Fungal cellulose binding domain
    0.00023   20.4   0.0    0.00048   19.3   0.0    1.4  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
    0.00077   19.2   0.5     0.0012   18.5   0.5    1.2  1  DUF4038          Protein of unknown function (DUF4038)


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  516.8   0.0  1.8e-158  6.3e-155       3     505 ..     166     646 ..     164     647 .. 0.96

  Alignments for each domain:
  == domain 1  score: 516.8 bits;  conditional E-value: 1.8e-158
                      HHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEE.....ETTSCEEEEEEE--BB-TT--TTTTTSCBCCHHHHSSGGG-BB--HHHHHH CS
  G_glu_transpept   3 vLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvy.....daktkkvealdaretAPaaatkdmfdkegdsklsktgalavgVPGevagle 91 
                      +L++GGnAvDAav ++lc+gvv+++ssGiGGGgf++v+       ++++v+a+d+retAPa  +k+m+   +d+  s+ g+lavgVPGe++gl+
       CDO69374.1 166 ILQDGGNAVDAAVSTTLCIGVVNMFSSGIGGGGFMTVRvppanASASSEVYAIDFRETAPALSNKTMY--VDDPLSSRWGGLAVGVPGELRGLD 257
                      9************************************833332345677889****************..************************ PP

                      HHHHHH-SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHHHH CS
  G_glu_transpept  92 eahkkyGklpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaeaFYkGelAek 185
                      eahk++Gklpw++l+epa++la  G++v+++lar ++  ++ + ++p+++ +F+p+g+ lkage++++ +l++tL+ +a+eG++aFYkG +A++
       CDO69374.1 258 EAHKRWGKLPWKRLVEPAAQLAA-GWKVQNELARRIEMFAPLMLSHPDWKPIFAPDGHLLKAGEIIRRTNLSRTLSIIAKEGPDAFYKGPIADA 350
                      **********************5.********************************************************************** PP

                      HHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SST CS
  G_glu_transpept 186 lvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylgDp 279
                      +v++++++gGil+ eDL+ny+++v+++l+ +y +g+++y+p ++++g+vl+++Ln++e++d    + +s  ++h++vEamk+ +a+R+r +gDp
       CDO69374.1 351 IVRKVKETGGILSREDLENYHANVKHALQGTY-RGRKIYTPHAPTSGPVLIHMLNLMEHYDDLIKEGRSTLNVHRFVEAMKFGFAARTR-VGDP 442
                      ********************************.99**************************555555679*******************.**** PP

                      TTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSB CS
  G_glu_transpept 280 dfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfs 373
                       f++++ + + e+  keya+e+ ++I+d+                      h +vvD++g+aVSltst+nl FGs+v+ p tG++Ln+emddfs
       CDO69374.1 443 AFHDQM-QRIHEIPTKEYAAEVVANITDS----------------------HSAVVDKDGMAVSLTSTVNLVFGSAVLDPVTGVILNDEMDDFS 513
                      ***866.9999**************9874......................678**************************************** PP

                      S.TS..TTSCSTTSTTB--TT----B----EEEEE.TTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEESSSSTEEEESTTS CS
  G_glu_transpept 374 t.gvenafgldpspanaiePgkRplssmaPtivlk.dgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihhqllpdkvevEegf 465
                      t g +nafgl psp+n++ePgkRplss++Pti+++ dg++ +++G++GGsri  av+q+++nv d+g+d+++a+++ r+h+ql+p+ v+ ++ +
       CDO69374.1 514 TpGTPNAFGLYPSPYNYPEPGKRPLSSTTPTILEHeDGSFLMAIGGSGGSRIFPAVFQTILNV-DWGMDISAAIESGRLHDQLYPMLVDADDIL 606
                      **************************************************************8.9***************************** PP

                      .HHHHHHHHHTTSEEEESSSTCCCEEEEEEEETTTEEEEE CS
  G_glu_transpept 466 seevveeLearGhkvkevedsssvvaavavakekgvleaa 505
                      +++++++L++ Gh++++++++  +  ++av+k +++++++
       CDO69374.1 607 PSSLLDGLREKGHNITVSDTNRVAAVIQAVFKPNATIYGN 646
                      *******************************999999985 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   7.2   5.2e-31   1.9e-27       3     278 ..     762    1057 ..     760    1060 .. 0.80

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.2e-31
                  TTSEEEEGEEECETTSCGG...SHHHHHHHHHHHT-SEEEEEEEC.TGGTTSSTTT.GCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTT...... CS
   Cellulase    3 asgkpvnlkglstswgnpy...ttkalidevkdagfntvRlpvsw.gelvenapdy.kvdenslerveevvkyakenglyvildiHseegw...... 88  
                  a+  +v+l g+st  +n++    +k+ +++v+++gfn v  p ++  +l +n++ + +++++ l+++++vv++ak+ngl+ i+ + ++  w      
  CDO69374.1  762 ANSYWVGLMGYSTAQMNQAfsdIAKTGATTVRTWGFNDVTSPNGIyYQLWQNGKATvNTGATGLQNFDNVVAAAKANGLRLIVALTNN--Wsdyggm 856 
                  6778899*******9998899999********************6333334443334999***************************7..5554555 PP

                  .........CSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCT.CCT.CHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHH CS
   Cellulase   89 .........ltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntg.aew.tseeadevkayaeeaikaIRavgpnrliivegns 174 
                             ++d   ++++  + +k++++ + +ry ++++++++el+NEP++ +++ +    +++++++++++ e+ + I+++++n+l+ ++ ++
  CDO69374.1  857 dvyvqqiagSANHDLFYTNANVIAAYKSYINTFVSRYVNEPTILGWELANEPRCRGSTgT-StGTCTTQTITNWVSEISAYIKSIDSNHLVAIGDEG 952 
                  6666666777788888888889999*****************************988743.2579******************************99 PP

                  HHTBHHHHHCTSG.............SSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHH CS
   Cellulase  175 wsgnldgavlndP.............ndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeea 258 
                  + + + +   ++P             n ++   + + H Y++s  +          +    ++++d+a++ +  ++pvi++EfG+ ++d+     + 
  CDO69374.1  953 FFNEPGS--PDYPyqgtegidfnanlN-ITTIDFGTAHLYPGSWGET------SDPTGFGNKWITDHATSQKAANKPVILEEFGV-TSDQ---VSTY 1036
                  7776666..567766666654433222.466667899***9666322......22345678999********************8.5555...5889 PP

                  HHHHHHHHHT.TTEEEEEEES CS
   Cellulase  259 ekwldylkek.giswiyWsln 278 
                   +w++++ +    + ++W+++
  CDO69374.1 1037 TSWYNTIISTgLTGDLIWQAG 1057
                  999999988845578888876 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3  11.2   9.4e-17   3.4e-13       1      29 []     669     697 ..     669     697 .. 0.98
   2 ?   -4.2   0.7       4.9   1.8e+04      19      25 ..     919     924 ..     912     924 .. 0.70

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 9.4e-17
       CBM_1   1 lwgQCGGigWtGpTtCvsgatCtyqNeyY 29 
                 +wgQCGGigWtG TtCv+g+ Ct+qN+yY
  CDO69374.1 669 EWGQCGGIGWTGDTTCVAGTICTVQNPYY 697
                 6**************************** PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4.9
       CBM_1  19 gatCtyq 25 
                 g tCt+q
  CDO69374.1 919 G-TCTTQ 924
                 4.89886 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   0.00048      97     247 ..     869    1061 ..     851    1076 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-07
                       CCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS................CHHHHHHHHHHHHHHH-TTSEEEEETC......... CS
  Glyco_hydro_2_C   97 ynvladnpewlkavldrieelverdkNHpsviiWSlgNEs................gagedikalaelikklDptRlvhyegv......... 163 
                       ++    n ++ +a+   i+  v+r +N p+++ W l+NE+                +  + +++++++ik++D   lv   ++         
       CDO69374.1  869 HDLFYTNANVIAAYKSYINTFVSRYVNEPTILGWELANEPrcrgstgtstgtcttqTITNWVSEISAYIKSIDSNHLVAIGDEgffnepgsp 960 
                       45556778888999999**********************************98776667778899**************998899******* PP

                       ..........SSGGGTSSEEEEC.CTTTSSST.TCHHH.......HHHHHHHCHHHHSS-EEEEEESE-BST--TTHHHHHHCCCH-CCCCC CS
  Glyco_hydro_2_C  164 ..........aaareldviildi.ysrmyekv.gllee.......lekelenekkklqkPlilcEYghamgnslGglqeytelfkkyeeyQg 236 
                                 + +++l+ +++d   +++y  + g   +       + + + + +k  +kP+il E+g++  + +   + y+ +++    + g
       CDO69374.1  961 dypyqgtegiDFNANLNITTIDFgTAHLYPGSwGETSDptgfgnkWITDHATSQKAANKPVILEEFGVTSDQVSTYTSWYNTIIS--TGLTG 1050
                       ******999845555555555542234444321222224556666888888889***************9999999999999999..89999 PP

                       CCCCHCCHHHE CS
  Glyco_hydro_2_C  237 gfiweyidqai 247 
                        +iw+  +++ 
       CDO69374.1 1051 DLIWQAGSHFS 1061
                       99998777765 PP

>> DUF4038  Protein of unknown function (DUF4038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.5   3.4e-07    0.0012      19     197 ..     762     975 ..     742    1027 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.4e-07
                 EEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-...SSSS-B-TTS-BS-SST....-S-T..HHHHHHHHHHHHHHTT-..EEEEESS-...... CS
     DUF4038  19 gDTaWelfhrltreeaekYlddRaeqGFnviqavvlaeldglkapnaygekplidndltkpnea..Yfdhvdkivelaaekgl..lialvptw...... 107
                 +++ W ++   +  ++++ ++d a+ G +++ +  +   +++++pn    + +++++ +++n+     ++ d++v+ a+++gl  ++al   w      
  CDO69374.1 762 ANSYWVGLMGYSTAQMNQAFSDIAKTGATTVRTWGF---NDVTSPNGIYYQLWQNGK-ATVNTGatGLQNFDNVVAAAKANGLrlIVALTNNWsdyggm 856
                 666788888888888888899999999999998888...667799877777777774.3444333488999*****99999973267888889888865 PP

                 ....HHHHHTT.............SS-HHHHHHHHHHHHHHHTT-SEE..EEEECCC-TT...............HHHHHHHHHHHHHH--SS-EEEEE CS
     DUF4038 108 ....gdkvkegw........gpenifnaekakeygkylvaRYkalpii..WllggDrdgee..............revwkaiaegikeldpyalitfHp 178
                     +     +           +n+     +k+y++ +v+RY + p+i  W l+ + +++               ++ +++i ++ik++d+++l+++ +
  CDO69374.1 857 dvyvQ-----QIagsanhdlFYTNANVIAAYKSYINTFVSRYVNEPTIlgWELANEPRCRGstgtstgtcttqtiTNWVSEISAYIKSIDSNHLVAIGD 950
                 44441.....2234444344577888889999**************5536888888777779999999999876655699**************99987 PP

                 -......EETHHHHTT-TT-SSEEE CS
     DUF4038 179 r......tsssewlkeeewldfnml 197
                         s    ++  e +dfn+ 
  CDO69374.1 951 EgffnepGSPDYPYQGTEGIDFNAN 975
                 4344443333333455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1093 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 7411.59
//
Query:       CDO69375.1  [L=107]
Description: hypothetical protein BN946_scf184961.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-12   45.3   0.0    8.3e-12   45.1   0.0    1.0  1  Asp       Eukaryotic aspartyl protease
     0.0097   15.7   0.0     0.0097   15.7   0.0    1.1  1  TAXi_C    Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   9.3e-16   8.3e-12     230     314 ..      22     105 ..       8     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 9.3e-16
                 ETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE...EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 230 esegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl...vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 +++g y + C+s  + ++++f+ gg++ t+++ ++ + + +  ++qC+ ++       ++++w+LGd F++++y+ f +d n vg+A+
  CDO69375.1  22 SNAGFYSFPCAS--TPANVAFSWGGKTWTISAANFNFGKVT--ATQCVGAIagqDLGLGSNTWLLGDSFMKNVYSAFSFDSNSVGFAT 105
                 345899****97..999*******************99986..479*****6655556889**************************7 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-06    0.0097     101     160 ..      43     104 ..       2     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-06
                 SS-EEEE-GGGGEEE-SSSEEEE-EEE-..-S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C 101 ggaewtisgenllvkveggvvClafves..gvagesavviGglqlednllvFDleksrlgFs 160
                 gg++wtis++n+       + C++ + +     g+++  +G   +++++  F  +++ +gF+
  CDO69375.1  43 GGKTWTISAANFNFGKVTATQCVGAIAGqdLGLGSNTWLLGDSFMKNVYSAFSFDSNSVGFA 104
                 388*************************65445788999**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 754.49
//
Query:       CDO69376.1  [L=463]
Description: hypothetical protein BN946_scf184575.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.44   11.3   3.9       0.32   11.8   0.3    2.7  2  Kisspeptin  Kisspeptin


Domain annotation for each model (and alignments):
>> Kisspeptin  Kisspeptin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   1.8e-05      0.32      12      60 ..     218     267 ..     210     275 .. 0.86
   2 ?   -2.0   0.3      0.37   6.7e+03      22      33 ..     356     367 ..     336     396 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
  Kisspeptin  12 kpeaaeqrprlallcprkes.stgpqrpglcatrSrlipaprGalLvqre 60 
                 k++ a +r+ +a   +++e+  ++p r  l+  rSr+i++pr  +L+  +
  CDO69376.1 218 KTRDAALRQLRAEYGRSEEAlVQSPPRVDLPLQRSRTIATPRTDMLLSAS 267
                 57788899999999999999899***********************9765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.37
  Kisspeptin  22 lallcprkesst 33 
                 +a l ++ e s+
  CDO69376.1 356 KADLIKPAERSQ 367
                 444444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3539.33
//
Query:       CDO69377.1  [L=164]
Description: hypothetical protein BN946_scf184575.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1171.74
//
Query:       CDO69378.1  [L=236]
Description: hypothetical protein BN946_scf184575.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   28.9   0.0    1.9e-06   28.2   0.0    1.2  1  RsfS      Ribosomal silencing factor during starvation


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.1e-10   1.9e-06      28      93 ..     158     229 ..     146     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.1e-10
                 -SEEEEEEESSHHHHHHHHHHHHHHHHHC........C---EEECBTTS.SEEEEE-SSEEEEEEECCCHHHH CS
        RsfS  28 adymviatakserhlkalaeelekklkee.......aaealsveGlnegddWvlvdlgdvvVhllteeaReey 93 
                  + +via++k  +  + ++e++ + ++++          +++ + +  + +W ++d+g++ +h+l++eaRe+y
  CDO69378.1 158 WQWIVIAQVKEGTENRGAIESVIRIVRKTllsvdppLPLPPNSKRR-VNGGWAMIDVGNFAIHILSKEAREKY 229
                 5689***********************9988776542224444444.3449********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1830.05
//
Query:       CDO69379.1  [L=296]
Description: hypothetical protein BN946_scf184575.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-38  130.7   0.0    5.1e-38  129.9   0.0    1.3  1  SHR3_chaperone  ER membrane protein SH3


Domain annotation for each model (and alignments):
>> SHR3_chaperone  ER membrane protein SH3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   2.9e-42   5.1e-38       6     174 ..      82     268 ..      78     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 2.9e-42
  SHR3_chaperone   6 ataliigstsFflGvlfanfpyDynlLwssestee..afdaalehykflhaspplikrilhiviglgliglliklykpsednllFdgaSLvLyvv 98 
                     ++ +++++t+F+lG+lf+++ +D  +Lw+s++t+    +++a+++y +l++ pp + ++  +v+++g+ ++l+ l + +  nl+Fdg+S++Ly++
      CDO69379.1  82 RMSVVVSATAFLLGLLFTHWIADSLTLWKSPETQTdvRLWTAATYYAILMHGPPQLTYVYAAVALVGATTILWSLRDGRAGNLMFDGGSIFLYLT 176
                     5679*****************************9988999******************************************************* PP

  SHR3_chaperone  99 gvvvyitnivkglrtvtegawge..............vdredslkvlaasntilalvLvGVlvLQaGqwYaerkeqeelee..feeeeaeea 174
                     ++ vy++++ ++l   ++                    + ++    la+s++++ +vL+GVl+LQaG+w+ae+ + +e +   +e e++ ++
      CDO69379.1 177 ALAVYLYSVLPNLLNNFATLPLPfpsatdtsklppfpPSLREPTLELASSHLVCSVVLTGVLALQAGRWWAEQADIDEDDGedMEGERDGTE 268
                     *************999999888888888999999988566666789**************************97654443212555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2099.36
//
Query:       CDO69380.1  [L=276]
Description: hypothetical protein BN946_scf184575.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   41.6   0.0    1.2e-10   41.6   0.0    3.1  4  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.042   7.5e+02       1       9 [.      25      33 ..      25      35 .. 0.93
   2 !   41.6   0.0   6.6e-15   1.2e-10      22      73 ..      81     130 ..      79     131 .. 0.92
   3 ?   -2.4   0.1      0.35   6.4e+03      45      63 ..     153     171 ..     142     176 .. 0.71
   4 ?   -2.0   0.3      0.27   4.8e+03      14      14 ..     229     229 ..     198     272 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.042
  Linker_histone  1 hpsykdMik 9 
                    hps+ dMik
      CDO69380.1 25 HPSWIDMIK 33
                    9*******8 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 6.6e-15
  Linker_histone  22 SrqaIkkyikakykvvdvskf.ksllkkalkkgvekgelvqpkgkGasGsfKL 73 
                     S+ a+++y+++ky + d  ++  s+l+ka+++g+ekg+lv pk  G+sG++KL
      CDO69380.1  81 SLYALQRYVEDKYGL-DIGAAqVSQLSKAINHGAEKGILVLPK--GPSGRVKL 130
                     999***********9.7655558********************..*******9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.35
  Linker_histone  45 llkkalkkgvekgelvqpk 63 
                        kal+k  + g+   pk
      CDO69380.1 153 VKTKALAKSTTAGKTAAPK 171
                     4568888888888877777 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.27
  Linker_histone  14 a 14 
                      
      CDO69380.1 229 P 229
                     2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 1719.84
//
Query:       CDO69381.1  [L=189]
Description: hypothetical protein BN946_scf184575.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2001  (0.111607); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1356.64
//
Query:       CDO69382.1  [L=540]
Description: hypothetical protein BN946_scf184575.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-114  382.4   0.5   2.6e-114  382.0   0.5    1.2  1  CAP_N     Adenylate cyclase associated (CAP) N terminal
    1.2e-54  184.2   6.5    6.8e-54  181.7   6.5    2.0  1  CAP_C     Adenylate cyclase associated (CAP) C terminal
  ------ inclusion threshold ------
       0.83    8.6  29.4        1.7    7.6   5.6    2.2  2  DEC-1_N   DEC-1 protein, N-terminal region
          1    9.1   8.3       0.56    9.9   4.1    2.1  2  TBCC      Tubulin binding cofactor C


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.0   0.5  5.8e-118  2.6e-114       2     316 ..      11     339 ..      10     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 382.0 bits;  conditional E-value: 5.8e-118
                 XXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXSXH..............HHHHHHHHHH.HHHHHHHHHHH CS
       CAP_N   2 tlikRLEaatsrLEdiais...........essssasskasssssaaaaaaaaaakaaaaaaaa.............ksveaFdeli.sgsvkefvels 75 
                 t+ikRLEa+tsrLEd+a+            +     +++ s+  +a++++  ++a++a     +             +sv aFde i +g++k+fvel+
  CDO69382.1  11 TIIKRLEATTSRLEDLASLatsylppaaqvA-----ATSLSAPVNAEPRPVPPPAPHA-----PapvappaapaetpRSVVAFDEQIiEGKLKPFVELT 99 
                 89**************877877776443221.....2222222222222222222222.....12333466678888******98766*********** PP

                 HHH-H.HHHHHHHHHHHHHHHHHHHHHHHHHBE---.HHHHHHHCHHHHHHHHHHHHHHHTTTTST.THHHHHHHHCGGGGGGGGG--S-HHHHHHHHH CS
       CAP_N  76 kkigg.evaeqaelvkkafeaqrkfllvaskakkPadseelqelLkplseaiqkvqeireknrksk.lfnhLsavsegipalgWvavepkPapyvkemk 172
                 k++    v eq+ lv++ f++ r++ll+a+++kkP+ ++e+++lL pl+++i+++++ +e+nrk++ +fnhLs+v+eg+p++gWv+++pkP+pyv+e+k
  CDO69382.1 100 KSFAIpSVIEQVGLVEQEFKDLRELLLIAASCKKPE-QAEFEKLLGPLQKDIEAITRAKEANRKDReWFNHLSTVAEGAPCVGWVTITPKPGPYVAEIK 197
                 ***9669****************************6.***************************999******************************** PP

                 HHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHSTTS----TTSBE.......SSC--XXXXXXX....XXXXXXXX.....XXXXXXXX CS
       CAP_N 173 daaqFYtNrVlkeykekdkkhveWvksflqilkeLqaYvkeyhttGltWnkkGkdaeealkaaaaaasaaaaggpppPpPpPppasvfeeesaaasasa 271
                 d++qFY+NrV+ke+k+ d+kh++Wvk+++++l+e+++Y+ e+httGl+Wn+kG+++ee+ + +++aa+a+a g+pppPpPpP p+ ++    a ++++ 
  CDO69382.1 198 DSTQFYGNRVIKEFKDRDPKHADWVKAYIALLEEMRKYIIEHHTTGLAWNPKGVSVEEFKA-SSSAAPAPAGGAPPPPPPPP-PPVAPPPPPAGSASAP 294
                 **********************************************************964.44555555555544444444.4444445555678899 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXX CS
       CAP_N 272 aaggmsavFaeLnkGeaiTkgLkkVdksqkThKnPslrasstvpe 316
                 +a+g++avF++Ln+Ge+iTkgL+kVdksq+ThKnP+lra+s+vp+
  CDO69382.1 295 SAAGITAVFEQLNRGEEITKGLRKVDKSQMTHKNPALRAGSVVPA 339
                 9*****************************************996 PP

>> CAP_C  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   6.5   1.5e-57   6.8e-54       1     157 []     362     538 ..     362     538 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 1.5e-57
       CAP_C   1 kppklelegnkwlvenqe..................nnkeieieetelkqsvyifkCknstiqikgKvnaitldnckkvsvvvdsvvSsvevincksvk 81 
                 kp+k+ legnkw++   +                  n+++++++++e++q+v+ + Ckn+t+ +kgK+na+t+ nc k+sv+vdsv+Ssv+++n++s++
  CDO69382.1 362 KPAKFALEGNKWTIASISryaarkyaddttmqeyqeNQSPLTLDNVEISQTVNLYGCKNTTVVVKGKCNAVTMVNCVKTSVLVDSVISSVSITNSPSFA 460
                 799999999999998887788899999998888876666************************************************************ PP

       CAP_C  82 vqvlgkvptisiDktdgvqiyLskesldteivtsksseinvsvpk..eedgdykElpipeqfktkikkgklvtevveh 157
                 +q++gk+pti++D+td++qiyLske+ld+ei+t+k+s+invs+p   ee+g + E+pipe+f+t++ +gklvt+ veh
  CDO69382.1 461 LQITGKAPTIQLDSTDSGQIYLSKECLDVEITTAKCSSINVSLPVegEEEGVFAEHPIPEMFRTTVVDGKLVTTAVEH 538
                 ********************************************9999999*************************98 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.6   0.00038       1.7     117     153 ..      45      84 ..      14     135 .. 0.59
   2 ?    6.8  15.9   0.00063       2.8     115     158 ..     261     309 ..     250     354 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00038
     DEC-1_N 117 apapalaaapppapapvpddpapa..paapqaa..afaffn 153
                   ap+  a+p p p p+p  pap+  paap  +  +  +f+
  CDO69382.1  45 LSAPV-NAEPRPVPPPAPHAPAPVapPAAPAETprSVVAFD 84 
                 33444.34555555555554544432566654444233333 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00063
     DEC-1_N 115 aaapapalaaapppapapvpddp....apapaapqaaaf.affnpanld 158
                 +aapapa +a+ppp+p p p  p    a   +ap+aa   a+f+  n +
  CDO69382.1 261 SAAPAPAGGAPPPPPPPPPPVAPppppAGSASAPSAAGItAVFEQLNRG 309
                 58*********99776666544400113344566666554667766655 PP

>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.1   0.00013      0.56       2      47 ..     411     456 ..     410     483 .. 0.85
   2 ?    1.3   0.1     0.062   2.8e+02       4      35 ..     470     501 ..     467     508 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
                 -EEEE-S-BS-EEEE-S--S-EEEES-BS-EEE----SS-EEEES- CS
        TBCC   2 ssvkisnlsdctiylldplssvtiddcknctivlgpvsgsvfiedc 47 
                 + v++  +++ t+++ +++++vt+ +c++  +++  v +sv i++ 
  CDO69382.1 411 QTVNLYGCKNTTVVVKGKCNAVTMVNCVKTSVLVDSVISSVSITNS 456
                 5678889***********************************9975 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.062
                 EEE-S-BS-EEEE-S--S-EEEES-BS-EEE- CS
        TBCC   4 vkisnlsdctiylldplssvtiddcknctivl 35 
                 +++++ ++ +iyl +++  v+i+ +k + i +
  CDO69382.1 470 IQLDSTDSGQIYLSKECLDVEITTAKCSSINV 501
                 678899999**************999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3576.52
//
Query:       CDO69383.1  [L=675]
Description: hypothetical protein BN946_scf184575.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4537.00
//
Query:       CDO69384.1  [L=481]
Description: hypothetical protein BN946_scf184575.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3785.47
//
Query:       CDO69385.1  [L=200]
Description: hypothetical protein BN946_scf184575.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-45  151.6   0.2    1.2e-44  151.3   0.2    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    4.5e-05   23.2   0.0    5.5e-05   22.9   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
     0.0066   16.3   0.0      0.013   15.4   0.0    1.4  1  UEV        UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.2   2.1e-48   1.2e-44       1     139 [.      49     185 ..      49     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 2.1e-48
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r+qkel+++++++ +g+++++v+d nlf+wk+ ik ++d+pY+gg+F+++l++pe++P+kpP+v+f+tki+HP ++++G++c+ iL+++ W+p++tl+s
  CDO69385.1  49 RIQKELRDITNNPIQGLTVEPVED-NLFQWKCAIKAAPDSPYKGGTFRFTLSLPENFPFKPPTVTFTTKIYHPGINEEGQICVPILRDQ-WKPTITLSS 145
                 89*********************8.**************************************************************77.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 vl +iq  l++p p++p++ ++a++lk+d++++ ++++e+
  CDO69385.1 146 VLSTIQDKLNNPSPDDPFEPQIAAQLKNDKSKFLATAHEW 185
                 *********************************9999876 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   9.2e-09   5.5e-05      33     107 ..      89     156 ..      38     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 9.2e-09
   Prok-E2_B  33 tsggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLne 107
                  +ggt++++l +p++fp+ pp v  +        p in  +g +C+       d+w+p  ++  vl+ +q+ Ln+
  CDO69385.1  89 YKGGTFRFTLSLPENFPFKPPTVTFTTKI---YHPGINE-EGQICV---PILRDQWKPTITLSSVLSTIQDKLNN 156
                 38*********************999877...6799***.******...6899******************9994 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-06     0.013      53     120 ..      97     159 ..      87     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-06
                 EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS--TTT--HHHHHHHHHH-----XX CS
         UEV  53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLeeWkreksnlvslvqelaqafeeesP 120
                 ++ ++e++P+++P+v  + +       +  ++++G++  p+L++ ++++ +l+s++++++++ ++ sP
  CDO69385.1  97 TLSLPENFPFKPPTVTFTTKIY-----HPGINEEGQICVPILRDQWKPTITLSSVLSTIQDKLNNPSP 159
                 57799********987765433.....459************8655559********99999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1524.23
//
Query:       CDO69386.1  [L=1626]
Description: hypothetical protein BN946_scf184575.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.46
# Mc/sec: 10640.41
//
Query:       CDO69387.1  [L=194]
Description: hypothetical protein BN946_scf184575.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1418.88
//
Query:       CDO69388.1  [L=86]
Description: hypothetical protein BN946_scf184575.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 603.08
//
Query:       CDO69389.1  [L=81]
Description: hypothetical protein BN946_scf185040.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 561.33
//
Query:       CDO69390.1  [L=391]
Description: hypothetical protein BN946_scf185040.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2653.81
//
Query:       CDO69391.1  [L=1533]
Description: hypothetical protein BN946_scf185040.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-17   61.5   0.0      3e-16   59.6   0.0    1.9  2  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    3.5e-09   36.5   0.8    8.8e-09   35.2   0.1    2.2  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    2.9e-05   24.7   0.0    8.9e-05   23.1   0.0    1.9  1  zf-RVT           zinc-binding in reverse transcriptase
  ------ inclusion threshold ------
       0.01   15.7   3.4        4.8    7.0   0.1    3.3  3  IL28A            Interleukin-28A
      0.018   14.6   0.1      0.052   13.0   0.1    1.8  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
      0.097   10.8   0.1       0.15   10.2   0.1    1.1  1  FPP              Filament-like plant protein, long coiled-coi
       0.21   12.0   0.6        4.3    7.8   0.9    2.9  2  CLZ              C-terminal leucine zipper domain of cyclic n
       0.33   11.0   6.0        5.6    7.1   0.2    3.4  3  OmdA             Bacteriocin-protection, YdeI or OmpD-Associa
        1.1    9.1   9.6       0.45   10.4   4.2    2.7  2  Apolipoprotein   Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   1.5e-19     3e-16      36     195 ..     877    1037 ..     870    1093 .. 0.86
   2 ?   -3.5   0.0         3     6e+03       8      28 ..    1224    1240 ..    1222    1254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.5e-19
                  ..-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEE CS
       RVT_1   36 kllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryek 129 
                  +ll + q+g r gr t+d++   ++ +k ++++++   +++lD+k+aF   + ++l++ l + +vp++ ++++k  l +r+++++++  +s ++ + 
  CDO69391.1  877 SLLASLQFGGRAGRTTSDSIhlvTKTVKDAWRRGNVASVVFLDIKSAFPAASPARLYHNLRSRGVPQEYVDWLKVKLDGRKTCLKFDDYTSDPFDIL 973 
                  567889*****************9999999***********************************************************99****** PP

                  SB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT CS
       RVT_1  130 kglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesg 195 
                   g+ qG++lS +l+ ++ ++l+ + ++   g + +  +DD+ +++++k+   ++ ++v++++ + g
  CDO69391.1  974 SGIDQGCPLSVILYAFYNSDLIDSADTS-DGEKAVGSMDDVALVVTGKTF-TACHNKVRRFMDREG 1037
                  **************************97.8****************9776.455556666655544 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                  -EEE.......-THHHHCTB-- CS
       RVT_1    8 syRp.isllsvdykalnkliak 28  
                   yRp +     +yk +++++a+
  CDO69391.1 1224 AYRPwL-----NYKNMERVTAD 1240
                  699977.....*********99 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.4   4.8e+03      79     102 ..     453     476 ..     443     483 .. 0.70
   2 !   35.2   0.1   4.4e-12   8.8e-09       2     118 ..     487     618 ..     486     619 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
  Exo_endo_phos_2  79 ptfkssngsstiDltltsdnlals 102
                      ++ ++++++ tiD ++ +++++ +
       CDO69391.1 453 TEPRNHQTQPTIDSFFLGNTTQSQ 476
                      555666678899999999888776 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 4.4e-12
  Exo_endo_phos_2   2 liisvYippsd..elenlestlekllselksp..kiiilGDfNakhplWgsedtds......sargeeLiefleehslsllnllksg.ptfkss 84 
                      +++++Y+  ++  +++ ++++ ++l+ +  s+  +++ lGDfN++hp+W+s+ ++        +r+e L+e l  ++l+  + l+ g pt + +
       CDO69391.1 487 HLFNLYVDGDHdtAIRAVSRAAQRLVLSEASEahHHVWLGDFNRHHPAWDSPANHHlfttdnLERAEVLLEHLALFDLQ--QVLPAGiPTLEAT 578
                      78999999999998888888888887777777789****************777768888779****************..9999999*****9 PP

  Exo_endo_phos_2  85 ng..sstiDltltsdnlals....kleleeedlgSDHrpi 118
                      ++   +  D +++s++l+ +         +  + +DH p+
       CDO69391.1 579 RTknLTGPDNVFASPSLLARlrscEVVRDKRPTKTDHFPV 618
                      99644779**********9999653334445789999887 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.5e-08   8.9e-05      28      85 .]    1421    1478 ..    1408    1478 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.5e-08
      zf-RVT   28 appkvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpfakelW 85  
                  +p ++  +l    +n++p ++ l++ g + +++C+ C qe Et+ H + +Cp  +  W
  CDO69391.1 1421 IPRRHANLLVQFRTNHVPLQSYLHRFGRAPDATCPTCLQEPETVAHYLSACPTYSLHW 1478
                  78899999999999**************************************987777 PP

>> IL28A  Interleukin-28A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0024       4.8      89     129 ..     670     710 ..     644     717 .. 0.86
   2 ?    7.0   0.3    0.0025         5      89     130 ..     747     788 ..     727     800 .. 0.86
   3 ?   -0.7   0.0      0.55   1.1e+03     116     137 ..    1439    1460 ..    1430    1466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHTTT-------SHHHHHHHHHHHHHHTSTTT CS
       IL28A  89 etLrhihsdlqaCveaqptadprpsgrlrhwLhrLqeakkk 129
                 +tL h+ sdlqa +  +  +++++   +r wL+ L++++k+
  CDO69391.1 670 ATLDHLMSDLQATIDEHVPEAASTPYAKRWWLKDLSKMRKE 710
                 69************999999999889999*******99765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHTTT-------SHHHHHHHHHHHHHHTSTTTS CS
       IL28A  89 etLrhihsdlqaCveaqptadprpsgrlrhwLhrLqeakkke 130
                 +tL h+ sdlqa +  +  +++++   +r wL+ L++++k++
  CDO69391.1 747 ATLDHLMSDLQATIDEHVPEAASTPYAKRWWLKDLSKMRKEK 788
                 69************999999999889999*******997654 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.55
                  HHHHHHHHHTSTTTS-HHHHHH CS
       IL28A  116 lrhwLhrLqeakkkespgClea 137 
                  l+++Lhr  +a+ +  p Cl++
  CDO69391.1 1439 LQSYLHRFGRAPDATCPTCLQE 1460
                  7899****************97 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.6e-05     0.052     139     215 ..     514     603 ..     366     615 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                    HHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-B................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................... RF
  Exo_endo_phos 139 lnadrgapvivaGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrl................................... 199
                      a + ++ +++GDfN ++ ++ds+                                  +l                                   
     CDO69391.1 514 SEASEAHHHVWLGDFNRHHPAWDSPANH-------------------------------HLfttdnleraevllehlalfdlqqvlpagiptleat 578
                    34555666789*************9922...............................2222222222222222224444444444444444444 PP

                    ........EEEEEEC.HHHCCEEEE CS
                    ........xxxxxxx.xxxxxxxxx RF
  Exo_endo_phos 200 ........Drilasp.alalfrsgv 215
                            D ++asp  la+ rs++
     CDO69391.1 579 rtknltgpDNVFASPsLLARLRSCE 603
                    4444444488888886666666655 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   7.5e-05      0.15     747     813 ..     134     201 ..     123     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.5e-05
         FPP 747 slaetqlkcm.kesyesletrateleaelnelkqkieaLeveLeeekksheeleakckelqeqlerve 813
                 + ae+ql     e  +++etr +el++ ++++++k+e+  +eL + ++s + +e k  e ++ le+++
  CDO69391.1 134 ERAEDQLTLRlDEHASHVETRVAELTQGVERMRRKMETTVAELRDACDSVQRAEEKLGEARKSLESAA 201
                 56899988642788899**********************************************99975 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.86   1.7e+03      28      46 ..      55      73 ..      46      77 .. 0.88
   2 ?    7.8   0.9    0.0021       4.3      35      68 ..     143     176 ..     123     192 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.86
         CLZ 28 eleekverLessLeaLqtr 46
                 +e+kv +L +++e Lq+r
  CDO69391.1 55 AAEDKVPSLGAAVEFLQKR 73
                689**************98 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
         CLZ  35 rLessLeaLqtrlarLlaeyessqrkLkqRitkL 68 
                 rL+++  + +tr+a L + +e + rk++  +++L
  CDO69391.1 143 RLDEHASHVETRVAELTQGVERMRRKMETTVAEL 176
                 4555555555555555555555555555544444 PP

>> OmdA  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2    0.0097        19      25      50 ..     692     717 ..     678     721 .. 0.93
   2 ?    7.1   0.2    0.0028       5.6      25      52 ..     769     796 ..     755     799 .. 0.93
   3 ?   -2.6   0.1       2.8   5.6e+03      29      42 ..     813     826 ..     811     827 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0097
        OmdA  25 ltpsyrreylrwiesaKrpeTRakRi 50 
                  tp+++r +l  +++ +++++R +R+
  CDO69391.1 692 STPYAKRWWLKDLSKMRKEKERLARL 717
                 59***********************8 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0028
        OmdA  25 ltpsyrreylrwiesaKrpeTRakRiek 52 
                  tp+++r +l  +++ +++++R +R++ 
  CDO69391.1 769 STPYAKRWWLKDLSKMRKEKERLARLAH 796
                 59***********************986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.8
        OmdA  29 yrreylrwiesaKr 42 
                 yr+ y + i++aK 
  CDO69391.1 813 YRNMYADNIQAAKN 826
                 9***********96 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.2   0.00023      0.45     103     164 ..     137     198 ..      22     203 .. 0.66
   2 ?    0.5   0.2      0.24   4.9e+02      89     134 ..     706     764 ..     634     771 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                     H..HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS- CS
  Apolipoprotein 103 e..lrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekle 164
                     e  l  rl++h++ + +r+a++++ +   +++++e    +l+++ ++v+ r+++++ e+r++le
      CDO69391.1 137 EdqLTLRLDEHASHVETRVAELTQGVER-MRRKMETTVAELRDACDSVQ-RAEEKLGEARKSLE 198
                     1223444444444444444443333332.44444444444444444444.44444444444444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.24
                     CHHCCHHCHCCHCHH..............HHHHHHHH........HHHHHHHHCHHHHHHHHHHHHHH CS
  Apolipoprotein  89 daeelqeqlavyaee..............lrerlerh........vealkarlapyveelrqklaerl 134
                     ++++          +              l +rle+h        + a  a+l+ ++ +l++ ++e++
      CDO69391.1 706 KMRKE---------KerlarlxxxxxxxaLAKRLEAHalpthidsTAAFDATLDHLMSDLQATIDEHV 764
                     22222.........022222233355555566666666666666666666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.51
# Mc/sec: 9112.12
//
Query:       CDO69392.1  [L=581]
Description: hypothetical protein BN946_scf185040.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 3673.25
//
Query:       CDO69393.1  [L=118]
Description: hypothetical protein BN946_scf185040.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 872.73
//
Query:       CDO69394.1  [L=858]
Description: hypothetical protein BN946_scf185040.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-125  417.2   0.0   6.1e-125  416.7   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.7   0.0  3.4e-129  6.1e-125       1     324 []      66     382 ..      66     382 .. 0.96

  Alignments for each domain:
  == domain 1  score: 416.7 bits;  conditional E-value: 3.4e-129
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 Fkn  eL+k+iD  lp g+p++k++e+ v+ge            +e+++rd+le+i++l+g+p+fa++l ++Per+ytd+++++rvy +m+tgdw+w++
  CDO69394.1  66 FKNMSELNKIIDGhLPAGRPRFKRREIVVQGEA-----------FEVYYRDVLECIRALFGDPEFAQDLLLVPERHYTDASRQTRVYFDMNTGDWWWRI 153
                 9***********99*****************87...........**********************************99888**************** PP

     Plavaka  99 q..ieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLk 195
                 q  ++ +++ g t+vp+i+ssDKT+l+vf gnk+ayPvYl+iGn+pk++rrk+s++++vllayLp+++l++i+ +++ r+++  +lfHac+++il+pL+
  CDO69394.1 154 QrlLD-RHSPGGTVVPIIISSDKTQLTVF-GNKTAYPVYLTIGNLPKDIRRKPSHRGQVLLAYLPTSNLEHIT-NQSSRRRTLLNLFHACMRHILAPLQ 249
                 *8544.3334*******************.******************************************7.5555555****************** PP

     Plavaka 196 eagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl..eeselrtreetlelleeaade...lkklwkeyglkgviep 289
                 +ag++gv+m+ +dg++ r++p+laay++DypEqvlvac+++g+Cpkc ++++elg++  +e++ r+ +++l++l ++ d+   ++++++++g+k+vi p
  CDO69394.1 250 SAGEHGVTMARGDGVMFRCHPVLAAYVGDYPEQVLVACCKKGDCPKCPIPRDELGNStdTECAIRDIKKVLDALDTFDDGptaYNNACENAGIKPVIGP 348
                 *******************************************************9767889***********99998779999*************** PP

     Plavaka 290 FwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 Fw++lp++di++++tpD+LHql++gv+k Hl++W+
  CDO69394.1 349 FWKELPYVDIYASITPDILHQLYQGVMK-HLISWI 382
                 ****************************.*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5927.31
//
Query:       CDO69395.1  [L=82]
Description: hypothetical protein BN946_scf184889.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.8   0.6       0.43   10.3   0.0    2.1  2  DUF4219   Domain of unknown function (DUF4219)


Domain annotation for each model (and alignments):
>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.4e-05      0.43       5      20 ..      15      30 ..      11      31 .. 0.87
   2 ?    2.1   0.1    0.0091   1.6e+02      21      27 .]      70      76 ..      67      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.4e-05
     DUF4219  5 NYatWklrMklyLiaq 20
                NY  W l M++ L+++
  CDO69395.1 15 NYQQWRLDMEARLRTL 30
                **********999876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.0091
     DUF4219 21 dLWevVe 27
                ++W++Ve
  CDO69395.1 70 EIWNCVE 76
                69****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 564.61
//
Query:       CDO69396.1  [L=370]
Description: hypothetical protein BN946_scf184889.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-29  101.6   1.0    5.8e-29  101.3   0.1    1.5  2  KDZ       Kyakuja-Dileera-Zisupton transposase


Domain annotation for each model (and alignments):
>> KDZ  Kyakuja-Dileera-Zisupton transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.1   3.2e-33   5.8e-29     148     223 .]      11      86 ..       3      86 .. 0.95
   2 ?   -3.1   0.1      0.28     5e+03     112     143 ..     255     287 ..     230     300 .. 0.60

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 3.2e-33
         KDZ 148 akekrlrflvpafHgyaHnrlCqlryhpnyveglGledgEgcErlfsksnalasstreaspfhrhqaiddhfkhwd 223
                  k++ +r+lv+ fHgy+H+++Cq+++hp++++g+Gled+ g+Er+fs +n+las++r+as++hr+ +id +fk+wd
  CDO69396.1  11 FKRQGCRCLVNTFHGYSHSHKCQTQNHPTVIKGAGLEDFKGIERIFSGLNQLASVIRYASKYHRRVLIDLYFKQWD 86 
                 68999**********************************************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.28
         KDZ 112 lvskllevlgkdl.gigYDIgCqfkktlakssl 143
                 +v++l+e +  ++   +Y +   + k+l+k+s 
  CDO69396.1 255 VVQRLFELHTMNIsQTAYKVCTYIAKNLQKQSK 287
                 455555544444323455555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2578.85
//
Query:       CDO69397.1  [L=243]
Description: hypothetical protein BN946_scf184889.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          2    8.4   5.7        2.8    7.9   5.5    1.3  1  TMEM247   Transmembrane protein 247


Domain annotation for each model (and alignments):
>> TMEM247  Transmembrane protein 247
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.5   0.00016       2.8      76     138 ..     137     209 ..     102     230 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00016
     TMEM247  76 gpttkGqaGdgpelvelpea..........pgierkaemelekvrmef..eltrlkylheenerqrqheevmeql 138
                 gp++k + G   +++e+++a            +  +++ +l+k +m+   el+rlk+  +e ++q++he   + l
  CDO69397.1 137 GPAAKRRKGMLQHVEEIASAdhktrslmmtMCLRARNKYKLKKHQMQHdvELARLKHEAQERDKQQEHEL--KLL 209
                 5555555555555555555555555555546677788899999999751166666665555555666654..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1697.02
//
Query:       CDO69398.1  [L=790]
Description: hypothetical protein BN946_scf184270.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-07   30.1   0.0    1.1e-06   29.1   0.0    1.5  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    1.2e-05   25.8   0.0    2.5e-05   24.8   0.0    1.5  1  Asp_protease_2   Aspartyl protease
    0.00011   21.9   0.0    0.00023   20.9   0.0    1.5  1  Asp_protease     Aspartyl protease
      0.004   17.2   4.3     0.0087   16.1   4.3    1.6  1  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.27   11.6   0.0    1.6  1  RVP              Retroviral aspartyl protease
        3.9    5.7  11.0        5.5    5.2  11.0    1.1  1  CDC45            CDC45-like protein


Domain annotation for each model (and alignments):
>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.8e-10   1.1e-06       2      86 ..     677     762 ..     676     765 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.8e-10
                      EEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEE..EEEE.EETTEEEEEEEEEESSSSEEEE CS
  gag-asp_proteas   2 kvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrld..svkiggielrnvsavvlegelddlLLG 86 
                      +++ n kpv+f+vDTG +  iis+++ + +  ++ ++ + + ++ a+g  +a  + ++   +kig+i++  ++a+v e+++ d+LLG
       CDO69398.1 677 EMECNFKPVTFIVDTGSQLNIISQQICQDVVRRPINQSEIAFMHDASGGRTALLGIVEdiPLKIGHIKTP-ITAYVQEKAPFDGLLG 762
                      5678899*********************99666666566789999***9999999998335799****98.***************9 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.3e-09   2.5e-05       8      90 .]     683     765 ..     676     765 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.3e-09
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds..lklggltlknvpalvldlgeeidglLGmdf 90 
                     kpv+f++DTG++ ++is++  ++   ++  ++    +  a+g ++a l+ +++  lk+g ++   ++a+v++ +++ dglLG ++
      CDO69398.1 683 KPVTFIVDTGSQLNIISQQICQDVVRRPINQSEIAFMHDASGGRTALLGIVEDipLKIGHIKT-PITAYVQE-KAPFDGLLGRPW 765
                     89*********************9888888776788899*************86688999887.58999999.99*******876 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.8e-08   0.00023      24     123 ..     673     773 ..     656     774 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.8e-08
  Asp_protease  24 mlyinvevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGv.GtkkilGrvhsaevklgdlflpvalsvledkevdlllGldllkrh 119
                   ++ +++e n ++v   vd+G+q  i+s++  +      +  + ++ +     G++ +lG v  + +k+g+   p++ +v e+   d llG    + h
    CDO69398.1 673 LIQLEMECNFKPVTFIVDTGSQLNIISQQICQDVVRRPINQSEIAFMHDASgGRTALLGIVEDIPLKIGHIKTPITAYVQEKAPFDGLLGRPWQQAH 769
                   56688999*********************9988755555556666666555588999*********************************9999999 PP

  Asp_protease 120 qvii 123
                   +++i
    CDO69398.1 770 KISI 773
                   9887 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   4.3   2.9e-06    0.0087       2      18 .]     404     420 ..     403     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +Cy CGe GHi + Cpk
  CDO69398.1 404 GCYGCGEAGHIMNYCPK 420
                 6***************7 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.1e-05      0.27       5      33 ..     672     702 ..     668     773 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
                 SEEEEEE..TTEEEEEEE-TTBSSEEEES-- CS
         RVP   5 Pllkvki..ggkyieallDtGAdatviseed 33 
                 Pl+++ +  + k++++++DtG +  +is++ 
  CDO69398.1 672 PLIQLEMecNFKPVTFIVDTGSQLNIISQQI 702
                 665555411566****************974 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  11.0    0.0018       5.5     123     210 ..     211     306 ..     186     339 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0018
       CDC45 123 yealeeeeesdeede........eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrqlkkerr 210
                  +al + +  d e+         ++e+++++d+ +e    +++++  ++  +++ +r++++de+e+s d+ e+ rk++r+e s+++++++ k++++
  CDO69398.1 211 AKALLSVDRFDTERLrakgryetDSEDDEESDSIQEVTGLSRRRSPVARAAHTHTRRRKTDDEDESSGDELEEFRKKKRDEFSRQQQEKKAKAAKK 306
                 444444444442222334444223333333344444444444444444444444444445555555777777778888887444444444333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1248  (0.0696079); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 5044.82
//
Query:       CDO69399.1  [L=573]
Description: hypothetical protein BN946_scf184270.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4160.75
//
Query:       CDO69400.1  [L=1737]
Description: hypothetical protein BN946_scf184270.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2204  (0.122929); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                       103  (0.00574488); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.28u 0.43s 00:00:03.71 Elapsed: 00:00:00.78
# Mc/sec: 6686.09
//
Query:       CDO69401.1  [L=69]
Description: hypothetical protein BN946_scf184270.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00047   19.9   0.3    0.00054   19.7   0.3    1.2  1  NADH_B2   NADH dehydrogenase 1 beta subcomplex subunit 2


Domain annotation for each model (and alignments):
>> NADH_B2  NADH dehydrogenase 1 beta subcomplex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3     3e-08   0.00054      18      47 ..      17      46 ..       9      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3e-08
     NADH_B2 18 kqvigaevlsglmwfWilwhlwhdpdhilG 47
                k+++ a +l+++mwf i+w+  +d  + lG
  CDO69401.1 17 KHKFLATTLGATMWFFIFWRARKDGAKLLG 46
                57889****************999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 514.82
//
Query:       CDO69402.1  [L=431]
Description: hypothetical protein BN946_scf184270.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-93  313.6   0.0      2e-93  313.4   0.0    1.1  1  G-alpha     G-protein alpha subunit
      1e-14   54.4   0.0    5.1e-11   42.3   0.1    2.7  2  Arf         ADP-ribosylation factor family
    1.6e-05   25.1   0.0       0.18   12.0   0.0    2.5  2  Roc         Ras of Complex, Roc, domain of DAPkinase
    0.00012   21.6   0.1       0.24   10.7   0.0    2.4  2  Gtr1_RagA   Gtr1/RagA G protein conserved region
     0.0028   17.4   0.0     0.0057   16.4   0.0    1.5  1  AAA_29      P-loop containing region of AAA domain
     0.0038   17.1   0.1       0.32   10.7   0.0    2.3  2  ATP_bind_1  Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.042   13.3   0.0    1.4  1  TniB        Bacterial TniB protein
        0.1   12.3   0.0       0.19   11.4   0.0    1.4  1  AAA_24      AAA domain
       0.11   12.0   0.0         17    5.0   0.0    2.5  2  Ras         Ras family


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4   0.0     1e-96     2e-93       1     354 []      30     420 ..      30     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 313.4 bits;  conditional E-value: 1e-96
                 XXXXXXXXXXXXXXXXXXXE...EEEEEEEESTTSSHHHHHHHHHHHCS--.--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT............HHH CS
     G-alpha   1 krtssaidkslkaerkarkk.krevkllllGqseSGKsTilkqlkllykkg.fseeelatwraviqlnivrsiktilealesleselsesf.....elq 92 
                 kr+s++id+ l++er++ +k + + k+lllGq+eSGKsT++k+++l++ ++ f+ e   +wravi+ln+ r ++ +l  l++++  +  +      + +
  CDO69402.1  30 KRISDEIDRALEHERQELRKhRPQTKILLLGQAESGKSTMIKNFQLYFCPSsFQAE-TVAWRAVIHLNLARFVNYLLYVLSNTNAGSGGKKgdpnkDYR 127
                 699*****************89999********************99988846655.777**********************75555444422222445 PP

                 C-SS-SCCCS-HCHHHH.......................................HHCCHHC-HCHHH..........HHHHHCCSHHHHHHHCCGCC CS
     G-alpha  93 elkerldplkkveasliaklssateee.............................qeiefnpraevge..........dikaLwndpgiqelyerrnk 152
                   + rl+plk+ e    +       e+                             + +e+n      +          di+aLw++p+i +l ++   
  CDO69402.1 128 MFQMRLSPLKADEGPGLR------FETvpevsvrggtgwkafirgrrrgsqsrmmtNPEEVN------DarrildackeDIVALWKSPAILALEKEG-- 212
                 555555555554443333......22244445679999999999999888655555444444......23333335555*********999887777.. PP

                 TT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEEC....T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TT CS
     G-alpha 153 iklednaeyFlddleritspdYlptddDilkarlktvGisetkfev....dsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedek 247
                 + l  +a+yF ++  r+++++Y+pt dDil+arl+tvG++e+++ +    +++ e+ ++dvgGqrs+r+ W+++f+dv+a iFl+++s+f+q l+ed++
  CDO69402.1 213 VDLHHHARYFVEHAARVADMKYTPTPDDILRARLRTVGVEEHRMVMetaaEKGEEWVLYDVGGQRSQRASWASYFEDVNAMIFLCPMSGFNQRLAEDRS 311
                 66668***************************************999999779********************************************** PP

                 SBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS.-GGGCCTT--.H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHH CS
     G-alpha 248 vnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkg.klskyfpsye.grkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevq 344
                 vnrl +s++l++++c ++ll ++ +iL+lnK D+l  Klk g ++s+y+++y+ +++n+++ v+ ylr++ +eih+ +s+++r++++h+t+a+d + ++
  CDO69402.1 312 VNRLYDSMELWDTVCRSRLLSKATFILLLNKADLLHAKLKAGiRFSDYVKNYDeDQPNTVDAVSAYLRKEMMEIHRVYSPRKRQLHVHITCAIDPTLMA 410
                 ****************************************************9889999**************************************** PP

                 HHHHHHHHHH CS
     G-alpha 345 kviesvrdti 354
                  v++s+rd+i
  CDO69402.1 411 AVLNSMRDVI 420
                 *******987 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00041      0.82       8      35 ..      47      74 ..      41      89 .. 0.87
   2 !   42.3   0.1   2.6e-14   5.1e-11      51     166 ..     259     384 ..     246     406 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00041
                GTT.TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  8 lklkkkelrilllGLDnaGKtTilkklk 35
                l++++ +++illlG  ++GK+T++k+++
  CDO69402.1 47 LRKHRPQTKILLLGQAESGKSTMIKNFQ 74
                56667789*****************997 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 2.6e-14
                 EEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-.CT.........THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHH CS
         Arf  51 eeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsad.re.........RleeakeeLkalleeeelkevallvlaNKqDlpealseeelrel 139
                 e+ + k+ +  ++DvGGq++ R  W +Yfe+++a+if+   +  ++         Rl ++ e  +++ +++ l+++++++l NK Dl +a  ++ +r +
  CDO69402.1 259 ETAAEKGEEWVLYDVGGQRSQRASWASYFEDVNAMIFLCPMSGfNQrlaedrsvnRLYDSMELWDTVCRSRLLSKATFILLLNKADLLHAKLKAGIRFS 357
                 555667778899**************************986641341111111224555555556777788889***********************99 PP

                 TTGGGSSSSSSEEEEEEBTTTTBTHHH CS
         Arf 140 lgleelkgkrkleiqkcsavkgeglke 166
                   +++   +++ ++ ++sa  ++ + e
  CDO69402.1 358 DYVKNYDEDQPNTVDAVSAYLRKEMME 384
                 999999999999999999999888776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00026      0.52       1      20 [.      55      74 ..      55      95 .. 0.85
   2 !   12.0   0.0   9.1e-05      0.18      30     119 ..     247     344 ..     232     345 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
                EEEEESSTTSSHHHHHHCHC CS
         Roc  1 KvvlvGdsgvGKtsllkrfv 20
                K++l+G++++GK++++k+f+
  CDO69402.1 55 KILLLGQAESGKSTMIKNFQ 74
                9****************996 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9.1e-05
                 TTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..........GHHH....HCHHHHHHHHHHH.CSSS-EEE CS
         Roc  30 stigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..........srss....enlkeWlkelkkv.agkspvil 113
                  t+gv+ ++  +   ++    +k +  +  ++D++Gq   r+   +y+++ +++i+++           +rs     ++++ W + ++++  +k+ +il
  CDO69402.1 247 RTVGVEEHRMVM---ETA--AEKGE--EWVLYDVGGQRSQRASWASYFEDVNAMIFLCPmsgfnqrlaeDRSVnrlyDSMELWDTVCRSRlLSKATFIL 338
                 677777654332...221..22333..5678*******************9999987633344444443222212224667788888876356677888 PP

                 EEE-TT CS
         Roc 114 vgnkiD 119
                 + nk+D
  CDO69402.1 339 LLNKAD 344
                 889988 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00055       1.1       1      17 [.      55      71 ..      55      88 .. 0.91
   2 !   10.7   0.0   0.00012      0.24      52     168 ..     270     412 ..     238     429 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00055
   Gtr1_RagA  1 kvLLmGksgsGKtsmrs 17
                k+LL+G+ +sGK++m +
  CDO69402.1 55 KILLLGQAESGKSTMIK 71
                89*************87 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00012
   Gtr1_RagA  52 lwDcgGqeafveeylssqkeeifrnvgvliyVfDve........sreleedletlkeilealr.....qyspeakvfvlihKmDliqedereeifeerk 137
                 l D+gGq++  ++      ++ f++v+++i++  ++        +    +++++l +++e        +   +a++  l++K Dl++ + ++ i  +++
  CDO69402.1 270 LYDVGGQRSQRASW-----ASYFEDVNAMIFLCPMSgfnqrlaeD----RSVNRLYDSMELWDtvcrsRLLSKATFILLLNKADLLHAKLKAGIRFSDY 359
                 78999998776664.....789**********9998776555442....34444444444433000013345799************999988765555 PP

   Gtr1_RagA 138 eeireeiekleke......................eiqffaTSiwdeslykAf 168
                  +  +e ++   +                      +++++ T+  d +l  A 
  CDO69402.1 360 VKNYDEDQPNTVDavsaylrkemmeihrvysprkrQLHVHITCAIDPTLMAAV 412
                 44444444322223455566667777788888888888888888888888775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.9e-06    0.0057      21      50 ..      52      81 ..      41      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.9e-06
      AAA_29 21 lkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++  +ll G+ +sGKST++  +q  ++p++
  CDO69402.1 52 PQTKILLLGQAESGKSTMIKNFQLYFCPSS 81
                33479**************99999999987 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        33       2      20 ..      59      77 ..      58      88 .. 0.78
   2 !   10.7   0.0   0.00016      0.32      84     206 ..     259     384 ..     240     417 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
  ATP_bind_1  2 vGpaGsGKttfvgalseil 20
                +G a sGK+t++++++ ++
  CDO69402.1 59 LGQAESGKSTMIKNFQLYF 77
                699**********998665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
  ATP_bind_1  84 eelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd.....ptkfisgllsalsamlrlelPhvvvlnkfDllkeklekel 177
                 e+  ++ ++++l+D+ GQ      ++s     e  +  + l+ +  ++ + ++d       + ++   + ++  l  + +++  lnk+Dll  kl+  +
  CDO69402.1 259 ETAAEKGEEWVLYDVGGQRSQRASWASYF---EDVNAMIFLCPMSGFNQRLAEDrsvnrLYDSMELWDTVCRSRLLSKATFILLLNKADLLHAKLKAGI 354
                 44444566999999999999999999999...66666666776666666666665432255555555567888888999*************9999999 PP

  ATP_bind_1 178 effedvealslllekee.ekykklaeaiae 206
                  f   v+++++ + ++     ++l +++ e
  CDO69402.1 355 RFSDYVKNYDEDQPNTVdAVSAYLRKEMME 384
                 998877777766655545333344444433 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-05     0.042      17      57 ..      34      75 ..      19      99 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
        TniB 17 keilerLeeLleypkrkrm.pnlllvGdsnnGKtmivekFar 57
                +ei + Le+  +  +++r+  ++ll+G+ + GK++++++F+ 
  CDO69402.1 34 DEIDRALEHERQELRKHRPqTKILLLGQAESGKSTMIKNFQL 75
                44555566666667788985689*****************84 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.7e-05      0.19       3      54 ..      54     134 ..      53     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.7e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfi...............................dtekGlksldadkfpdieswedfld 54 
                  kil+ G++++GK+t++k++  +  f+                               +t++G+   ++d  +d + +++ l+
  CDO69402.1  54 TKILLLGQAESGKSTMIKNF--QLYFCpssfqaetvawravihlnlarfvnyllyvlsNTNAGSGGKKGDPNKDYRMFQMRLS 134
                 69******************..3333355555555555666666666666666666766777776666666666666666555 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.012        24       1      20 [.      55      74 ..      55      90 .. 0.85
   2 ?    5.0   0.0    0.0086        17      29     118 ..     246     347 ..     237     384 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
                EEEEEESTTSSHHHHHHHHH CS
         Ras  1 KlvlvGdsavGKtslllrfv 20
                K++l+G+   GK++++ +f 
  CDO69402.1 55 KILLLGQAESGKSTMIKNFQ 74
                89*************99884 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0086
                 TTTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE.....EE..TTBHHHHHTHHHHHHHHHHHST....TTSEEEEEEETTT CS
         Ras  29 esTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillv.....yd..itsresfenvkkwveeikrvae....envpivLvGnKvD 115
                   T+gv++++  +e+  +k  +  ++D  Gq   ++   +y++d+++++ +     ++  + + +s +++ + +e   +v++    ++ +++L+ nK+D
  CDO69402.1 246 LRTVGVEEHRMVMETAaEKGEEWVLYDVGGQRSQRASWASYFEDVNAMIFLcpmsgFNqrLAEDRSVNRLYDSMELWDTVCRsrllSKATFILLLNKAD 344
                 5799999999888877466778999***********99****999987765122222222455566655554444444444455566677888888888 PP

                 GGG CS
         Ras 116 lee 118
                 l +
  CDO69402.1 345 LLH 347
                 765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3249.01
//
Query:       CDO69403.1  [L=306]
Description: hypothetical protein BN946_scf184742.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2347.99
//
Query:       CDO69404.1  [L=586]
Description: hypothetical protein BN946_scf184742.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 3401.38
//
Query:       CDO69405.1  [L=83]
Description: hypothetical protein BN946_scf184742.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0026   18.0   7.5     0.0032   17.8   7.5    1.0  1  DUF755           Domain of unknown function (DUF755)
  ------ inclusion threshold ------
      0.025   14.0  11.9       0.03   13.7  11.9    1.0  1  U79_P34          HSV U79 / HCMV P34
      0.059   13.7   4.7      0.062   13.6   4.7    1.1  1  DUF3619          Protein of unknown function (DUF3619)
       0.13   11.5   1.5       0.13   11.4   1.5    1.0  1  UPF0565          Uncharacterised protein family UPF0565
       0.13   12.3   2.2       0.12   12.4   2.2    1.1  1  DUF1664          Protein of unknown function (DUF1664)
       0.58   10.8   8.2       0.63   10.7   8.2    1.0  1  YabA             Initiation control protein YabA
       0.61    9.5  10.7       0.67    9.4  10.7    1.1  1  PIEZO            Piezo
       0.67    9.2  11.0        0.7    9.1  11.0    1.0  1  HemX             HemX, putative uroporphyrinogen-III C-methyl
       0.88    9.1  17.8       0.97    9.0  17.8    1.1  1  DDRGK            DDRGK domain
       0.96    9.4  13.6        1.1    9.2  13.6    1.1  1  Ax_dynein_light  Axonemal dynein light chain
       0.96    9.8  11.9        1.1    9.6  11.9    1.1  1  YlqD             YlqD protein
          1    9.3  10.5        1.4    8.8  10.5    1.3  1  RF-1             RF-1 domain
        1.2    8.6   8.5        1.2    8.5   8.5    1.0  1  Baculo_PP31      Baculovirus 33KDa late protein (PP31)
        1.4    9.9   9.1        1.7    9.6   9.1    1.2  1  DUF1764          Eukaryotic protein of unknown function (DUF1
          2    6.9   5.8        2.1    6.8   5.8    1.0  1  Herpes_UL6       Herpesvirus UL6 like
        2.2    8.6  14.8        2.4    8.5  14.8    1.0  1  Vfa1             AAA-ATPase Vps4-associated protein 1
        2.3    6.9   5.7        2.5    6.8   5.7    1.0  1  TSA              Type specific antigen
        2.5    8.0  14.4        4.7    7.1  14.2    1.5  1  betaPIX_CC       betaPIX coiled coil
        2.9    7.6  11.8        3.1    7.5  11.8    1.0  1  ATP11            ATP11 protein
          3    6.6   6.6        3.2    6.5   6.6    1.0  1  ALMT             Aluminium activated malate transporter
          3    8.6  10.9        4.2    8.1  10.9    1.2  1  Ku_C             Ku70/Ku80 C-terminal arm
        3.1    7.1  11.6        3.4    6.9  11.6    1.1  1  DUF4407          Domain of unknown function (DUF4407)
        3.2    6.5  13.6        3.4    6.4  13.6    1.0  1  PV-1             PV-1 protein (PLVAP)
        3.6    7.9  18.2        3.7    7.9  18.2    1.1  1  OmpH             Outer membrane protein (OmpH-like)
        3.9    7.1  15.0        4.4    6.9  15.0    1.1  1  GrpE             GrpE
        3.9    6.3   6.6        4.4    6.2   6.6    1.0  1  XRN_M            Xrn1 helical domain
        4.3    7.3   6.5        5.1    7.0   6.5    1.1  1  EMP24_GP25L      emp24/gp25L/p24 family/GOLD
        5.4    5.4   6.8          6    5.3   6.8    1.0  1  Herpes_UL25      Herpesvirus UL25 family
        6.1    6.9   8.8          7    6.7   8.8    1.1  1  COG2             COG (conserved oligomeric Golgi) complex com
        6.4    6.6   7.4        7.2    6.4   7.4    1.1  1  Folliculin       Vesicle coat protein involved in Golgi to pl
        7.2    6.6  11.4        7.9    6.5  11.4    1.0  1  TMEM119          TMEM119 family
        7.5    6.6  11.1        8.2    6.5  11.1    1.1  1  Peptidase_S49_N  Peptidase family S49 N-terminal
        8.6    6.8  12.7         41    4.7  12.7    2.0  1  LPP              Lipoprotein leucine-zipper


Domain annotation for each model (and alignments):
>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   7.5   5.8e-06    0.0032      52     113 ..       8      69 ..       4      76 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.8e-06
      DUF755  52 sqLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrnvssrsakkksakkrkksssSSssss 113
                 +qL q ++ql++k  ++++e  +++++ ++k+++++  ++r +++ +akk k  +s Sss+s
  CDO69405.1   8 KQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKAPESGSSSDS 69 
                 67888888887777777777888888888888888877777788888888754444444444 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  11.9   5.5e-05      0.03     139     208 ..       6      77 ..       2      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
     U79_P34 139 cveklekegraldrkkaddeq..rkrsgkqkekrkvedidkkkedekrkeeerkksdedkssdkkeeldedP 208
                  v++le++   l +k a++e+  r+++     kr+ e+  +k+e+e+ +  + k  ++  ssd+ ee++++P
  CDO69405.1   6 AVKQLEQQLEQLKKKVAEEEReaRRQAEEAERKRQQEEAARKREEERAQAKKWKAPESGSSSDSGEEVEQEP 77 
                 6889999999999999988752255556667789999999999999999999999999**********9998 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.7   0.00011     0.062       6      53 ..       3      50 ..       1      79 [. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00011
     DUF3619  6 ArkvaaaLdegaadlpediaeRLaaAReqAlarkkpeaaaravaaala 53
                A + +++L+++ ++l++++ae  ++AR+qA ++++++++++a+ ++  
  CDO69405.1  3 AADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREE 50
                6678899***********************988775533222222222 PP

>> UPF0565  Uncharacterised protein family UPF0565
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   0.00024      0.13     113     175 ..       4      65 ..       1      80 [. 0.54

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
     UPF0565 113 akalkHLeklllnlsqrllkskkeneilekaavqaaasaaanaaaaaeaalklsnatksekel 175
                 a a+k Le+ l +l++++ ++++e +   ++a + + ++++ a +++e+  + ++ +  e+ +
  CDO69405.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEA-ERKRQQEEAARKREEERAQAKKWKAPESGS 65 
                 6899**************98666666555555.222222222222222223333333222222 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.2   0.00023      0.12      40      85 ..       4      49 ..       1      73 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00023
     DUF1664 40 sdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskei 85
                +dav+++ +qleq+++++a+  r+  ++ ++ ++k ++ +++ k  
  CDO69405.1  4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKRE 49
                79**************************999999988777666554 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   8.2    0.0012      0.63       8      71 ..       5      68 ..       1      76 [. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0012
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXX CS
        YabA  8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegke 71
                d++++le+qle+l+++++e ++e  +  ee ++ + + e  r+r ee+ +++k k  e++++ +
  CDO69405.1  5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKAPESGSSSD 68
                6788888888888888888888888888888888888888888887777777766666666655 PP

>> PIEZO  Piezo
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  10.7    0.0012      0.67     111     168 ..       6      62 ..       2      75 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
       PIEZO 111 sleqlkrqmerikakqqkikkgkkeseeeelakeeeeeeeeaeeekkksekkkwwrPw 168
                  ++ql +q+e++k+k    +++++++ +ee+++++++ee ++++e+++ + kkw  P 
  CDO69405.1   6 AVKQLEQQLEQLKKKVAEEEREARRQ-AEEAERKRQQEEAARKREEERAQAKKWKAPE 62 
                 689**********9998744443333.3333444555566677777788999999885 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  11.0    0.0013       0.7      36      86 ..       6      56 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
        HemX 36 evaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlq 86
                 v++l+qql++l++++a+ e e+++++e +er +q++e+  ++e+e +q +
  CDO69405.1  6 AVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAK 56
                4599**************999999999988888888888888777777655 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  17.8    0.0018      0.97      22      83 ..       9      59 ..       2      80 .. 0.40

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0018
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK 22 eaeeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyeklksefv 83
                ++e++ ++ +kk            ee++e++++++e+e+++++ee +rk +ee  + +++  
  CDO69405.1  9 QLEQQLEQLKKKVA----------EEEREARRQAEEAERKRQQEEAARKREEER-AQAKKWK 59
                23333333333333..........333333333333333333333333333332.2222333 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  13.6     0.002       1.1     134     180 ..       6      52 ..       1      61 [. 0.52

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.002
  Ax_dynein_light 134 ekeelekqvaelkaklealekrekerrqeeekkheeeieflkksnqq 180
                       +++le+q+++lk+k++++e+++ ++ +e e+k+++e ++ k+++++
       CDO69405.1   6 AVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEER 52 
                      34555555555555555555555555555555555555555554443 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  11.9    0.0021       1.1      27      79 ..       5      55 ..       2      76 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0021
        YlqD 27 aqieqldkelqqLefqakrlikeikkqsaq..qieeiqeqvekekserlekkkql 79
                ++++ql+++l+qL+ +  + ++e+++q ++  +    + q e+  ++r+e+++q+
  CDO69405.1  5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEaeR----KRQQEEAARKREEERAQA 55
                467788888888877777777777775544221....222222222222222222 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.5    0.0026       1.4      60     109 ..       5      55 ..       2      68 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHH..HHHHHCCCCCHTTTTT-..S.-S---S.--ECEEEECGCT CS
        RF-1  60 kAlerLkaklke..keleeekeeekkrrvkk.ekkkigtgs.sekiRtynkkpq 109
                 +A+++L+++l++  k+++ee++e++++  ++ e+k  ++++ ++++R ++  + 
  CDO69405.1   5 DAVKQLEQQLEQlkKKVAEEEREARRQA-EEaERK--RQQEeAARKREEERAQA 55 
                 6788888888664322222222222222.221222..22222445555544333 PP

>> Baculo_PP31  Baculovirus 33KDa late protein (PP31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.5    0.0023       1.2     197     264 ..       5      69 ..       1      75 [. 0.52

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0023
  Baculo_PP31 197 eafkkillklnekektaassasvvetaasksksrkRkeskkakkkkkkakkkkkkkseppavemvsDn 264
                  +a k++ ++l++ +k+ a +++     + ++++rkR++++ a+k+++  ++ + kk ++p+    sD+
   CDO69405.1   5 DAVKQLEQQLEQLKKKVA-EEEREARRQAEEAERKRQQEEAARKREE--ERAQAKKWKAPESGSSSDS 69 
                  556666666644344433.3334444445566799999944444443..3334444445555555665 PP

>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.1    0.0031       1.7      10      60 ..       9      62 ..       2      81 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0031
     DUF1764 10 eideifseskkkkkekekeeeee...ekekkkkskkkkkkkkkkeeekkfedse 60
                ++++ +++ kkk  e+e+e++++   +++k+++++ ++k+++++ + kk++ +e
  CDO69405.1  9 QLEQQLEQLKKKVAEEEREARRQaeeAERKRQQEEAARKREEERAQAKKWKAPE 62
                344444444444433333333322213333333344444444444455555544 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.8    0.0039       2.1     379     430 ..       5      56 ..       2      76 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0039
  Herpes_UL6 379 dtiekLkkenelllkklkelekeLerlreeakkeakarevdlltsstdasle 430
                 d++++L+++ e+l+kk++e e+e +r++eea+++++++e+    ++  a+ +
  CDO69405.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAK 56 
                 8999********************9999888887777666666555555444 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  14.8    0.0044       2.4      62     122 ..       4      64 ..       1      79 [. 0.54

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0044
        Vfa1  62 akkkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeeekk 122
                 a + k+le+++e++kk++ e++++ +++ ++ ++k +++++  k +e+  +++k k  e  
  CDO69405.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKAPESG 64 
                 5566788999999999998888888766666544444444444444444444443212211 PP

>> TSA  Type specific antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.7    0.0046       2.5     340     413 ..       3      76 ..       1      82 [. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0046
         TSA 340 aaaavrllngsdslkdlykdlvklrrhagikkamekladqeeedaknqdk..adckkaqgaeekskkdkkkeaefd 413
                 aa av+ l  +++l++l k ++  +r a  +    +   q+ee a+++++  a+ kk +  e  s  d+++e e +
  CDO69405.1   3 AADAVKQL--EQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEerAQAKKWKAPESGSSSDSGEEVEQE 76 
                 56677776..5999*******9999999877666666777777777665557999999999999999999998865 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  14.2    0.0087       4.7      42      84 ..       5      48 ..       2      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0087
  betaPIX_CC 42 devqelkqenkklkksl.eeEqkaRkdLEkvvrkllksindetw 84
                d v++l+q++ +lkk++ eeE+ aR++ E+  rk  ++    ++
  CDO69405.1  5 DAVKQLEQQLEQLKKKVaEEEREARRQAEEAERKRQQEEAARKR 48
                89***********9877478889*******99998776655554 PP

>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.8    0.0057       3.1      19      73 ..      11      65 ..       3      79 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0057
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       ATP11 19 lesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekkesaa 73
                 +++e+Lk++++++  e r++a++++ +++++e+++++e+++++++k ++ es +
  CDO69405.1 11 EQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKAPESGS 65
                4689999999999988888888555533333333333333333322222222211 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.6    0.0058       3.2     334     401 ..       4      70 ..       1      79 [. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0058
        ALMT 334 kvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeeaeaveeaeseseksll 401
                   a+++L+++l++  k  v+ e+ ea +++e+ae++++++e ++++e+++ +a++ ++ es s++++ 
  CDO69405.1   4 ADAVKQLEQQLEQLKK-KVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKAPESGSSSDSG 70 
                 5688888888855543.566666677777777777777777777777777666666666655555444 PP

>> Ku_C  Ku70/Ku80 C-terminal arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.9    0.0077       4.2      44      87 ..       7      59 ..       3      60 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0077
                HHH-....HHHHHHHHHHHHH......HHHHH...........---THHHHHH CS
        Ku_C 44 dkragslleewkelfeleeedke....kkkekrkaed.....edeepaakkak 87
                 k+++++le++k+++++ee ++     +++ kr++e+     e+e+ +akk+k
  CDO69405.1  7 VKQLEQQLEQLKKKVAEEEREARrqaeEAERKRQQEEaarkrEEERAQAKKWK 59
                588999************9998668763333333333667777777799*999 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  11.6    0.0062       3.4     191     236 ..       6      54 ..       2      75 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0062
     DUF4407 191 qldaaqaelaelkakld...atarlaalraelaeleaerakeraasqaa 236
                 + ++++++l++lk+k+    ++ar++a +ae+++ ++e+a++r++ +a+
  CDO69405.1   6 AVKQLEQQLEQLKKKVAeeeREARRQAEEAERKRQQEEAARKREEERAQ 54 
                 4445555555555554422222222222222222222222222222222 PP

>> PV-1  PV-1 protein (PLVAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.6    0.0062       3.4     281     336 ..       5      60 ..       1      68 [. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0062
        PV-1 281 tkveelarslragiervarensdlqrqkleaeqslrasqeakekvekeaqareakl 336
                 + v++l ++l    ++va e+ + +rq +eae+  +  ++a+++ e+ aqa++ k 
  CDO69405.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKA 60 
                 67999999***99***********************99999999999999998775 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  18.2    0.0069       3.7      17      69 ..       3      57 ..       1      76 [. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0069
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHH.HHHHH CS
        OmpH 17 gkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqe.lqkke 69
                + +a +qle++ ++l+++++++e+e ++++ee ++k +++ + +++e+e  q+k+
  CDO69405.1  3 AADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEeAARKREEErAQAKK 57
                578999999999***************9999999888886444444444455543 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  15.0    0.0082       4.4      10      62 ..       3      55 ..       1      63 [. 0.74

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0082
                THHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHH CS
        GrpE 10 eedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaie 62
                ++d+ ++le++le+l+k+v+e + +  r+++e+e  r++ e  ++  ++ a  
  CDO69405.1  3 AADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQA 55
                56788999999999999999999999999999987777665555555554443 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.6    0.0081       4.4      63     120 ..       5      65 ..       2      79 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0081
       XRN_M  63 drveklvslvgkveekifrkrkeredrkekklakeeeaske...daaneeaavaeeklses 120
                 d v++l +++++  +k+ ++ +e ++++e+ + k+++++++   +++ ++a+  ++++s+s
  CDO69405.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAArkrEEERAQAKKWKAPESGS 65 
                 5678888888888888876554444444333333322222200022222222222222222 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.5    0.0094       5.1     110     154 ..       4      48 ..       1      49 [. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0094
  EMP24_GP25L 110 kekletleselkkleekldsikreqkylrereerlrdtnestnsr 154
                   + +++le++l++l++k+ + +re + + e  er r++ e + +r
   CDO69405.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKR 48 
                  57899*******************************999887765 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.8     0.011         6      53     114 ..       9      71 ..       3      79 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
  Herpes_UL25  53 alraeLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaar..pplspssasplt 114
                   l++ L++l++k+++  +e++r+ +e+E++ + + e+ +  ++e+a+a++  +p s ss+  + 
   CDO69405.1   9 QLEQQLEQLKKKVAEEEREARRQAEEAERKRQ-QEEAARKREEERAQAKKwkAPESGSSSDSGE 71 
                  47899999999999999999999999999988.4455466666666666665333444444344 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.8     0.013         7      68     113 ..       4      49 ..       1      60 [. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.013
        COG2  68 qeeleevesplaaarkkvesvreklsereeeveskleeakeleekr 113
                  ++++++e++l++++kkv + +++  ++ ee e k ++ +++++ +
  CDO69405.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKRE 49 
                 6889999999999999999999999999999999888877777655 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4     0.013       7.2      90     143 ..       5      55 ..       2      77 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
  Folliculin  90 eafeklaaeiqalaeaelereskeeeassaassssalkadgsglsrregssfsl 143
                 +a+++l +++++l ++++e+e++ ++++++a+++   +++++++++re+++ + 
  CDO69405.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERK---RQQEEAARKREEERAQA 55 
                 6778888999999999998877755544333332...23333333332222222 PP

>> TMEM119  TMEM119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.4     0.015       7.9     168     237 ..       2      71 ..       1      79 [. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.015
     TMEM119 168 asGdgarvvegkseeeekggqevdeeaqgsgvpaekpeveeepcsaeaeaalaagegegepegalslaqe 237
                 +  d+++++e++ e+ +k  +e+++ea+ ++  ae++  +ee++    e+ ++a++ ++   g+ s + e
  CDO69405.1   2 SAADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKWKAPESGSSSDSGE 71 
                 56799*******99999999999*************9999999887777766665555544444343333 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.1     0.015       8.2      43      92 ..       7      54 ..       2      75 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.015
  Peptidase_S49_N 43 vtkLneeykelkeeleealldeeelkaaekkekkeekeekkaekkkakee 92
                     v++L++++++lk+++ e+  +   +++ae +e+k+++ee+ +++++++++
       CDO69405.1  7 VKQLEQQLEQLKKKVAEEEREA--RRQAEEAERKRQQEEAARKREEERAQ 54
                     5667777777777666553332..22222233333222222222222221 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  12.7     0.076        41       9      39 ..       7      37 ..       3      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.076
         LPP  9 VsqLkskvdqlssdvnsakaaaqaakeEAaR 39
                V+qL+++ +ql+++v++ + +a    eEA+R
  CDO69405.1  7 VKQLEQQLEQLKKKVAEEEREARRQAEEAER 37
                8888888888888888888888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3785  (0.21111); expected 358.6 (0.02)
Passed bias filter:                     1634  (0.0911373); expected 358.6 (0.02)
Passed Vit filter:                       411  (0.0229238); expected 17.9 (0.001)
Passed Fwd filter:                        70  (0.00390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 552.18
//
Query:       CDO69406.1  [L=399]
Description: hypothetical protein BN946_scf184742.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-14   53.8   0.3    3.5e-14   52.6   0.3    1.7  1  Integrase_H2C2  Integrase zinc binding domain
    2.1e-12   47.3   0.0    3.4e-12   46.6   0.0    1.4  1  rve             Integrase core domain
    2.1e-07   31.0   0.1    4.3e-07   30.0   0.1    1.5  1  zf-H2C2         H2C2 zinc finger
  ------ inclusion threshold ------
      0.039   13.7   0.2      0.095   12.5   0.0    1.8  2  rve_3           Integrase core domain


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.3   7.9e-18   3.5e-14      13      57 ..       2      48 ..       1      49 [. 0.97

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 7.9e-18
  Integrase_H2C2 13 aHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57
                    +Hd+  agH G +kt +++ r y Wpg+r  v++y+ksC+tC r+k+
      CDO69406.1  2 FHDHptAGHWGQNKTQALVLREYAWPGLRLFVRDYCKSCTTCVRSKA 48
                    8*******************************************997 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   7.5e-16   3.4e-12       3     118 ..      65     178 ..      63     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 7.5e-16
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp   +++D+   ++  + gg + +lvvvd  ++  + +   +  +a  +++l  + v + +gv p  v+sD+gse++s+ f  + + l++++ ft  +
  CDO69406.1  65 RPWNSISMDLIeQLP--NSGGYSTILVVVDWLTKQGIFILAHNTLTALELADLFIMHVFSKHGV-PSHVTSDRGSEFVSHFFCSLGKALDMHLHFTSGY 160
                 677789999995555..8999************9977777777779999999999999999999.********************************** PP

         rve 101 rpqdnGkvErfhrtlkde 118
                 +p+ nG  Er ++tl++ 
  CDO69406.1 161 HPEGNGQTERVNQTLEQY 178
                 ***************985 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   9.5e-11   4.3e-07       4      38 ..       9      43 ..       7      44 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 9.5e-11
     zf-H2C2  4 tHlGinkltallarkYhwlgiketvseVissCkaC 38
                 H G+nk+ al+ r+Y w+g+   v++ ++sC++C
  CDO69406.1  9 GHWGQNKTQALVLREYAWPGLRLFVRDYCKSCTTC 43
                6********************************** PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.095       3      29 ..     152     178 ..     150     200 .. 0.88
   2 ?   -3.5   0.1       2.2   9.7e+03      42      53 ..     251     262 ..     249     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
       rve_3   3 ielsyiapgkPqqNglvEsfngtlrde 29 
                 + l+++  ++P  Ng  E++n+tl + 
  CDO69406.1 152 MHLHFTSGYHPEGNGQTERVNQTLEQY 178
                 679********************9875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
       rve_3  42 arekleawredY 53 
                 +r+++++++ +Y
  CDO69406.1 251 LRQQIAEAQVWY 262
                 688999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2960.63
//
Query:       CDO69407.1  [L=760]
Description: hypothetical protein BN946_scf184791.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   93.7   0.0      2e-26   93.0   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   1.1e-30     2e-26      21     319 ..     334     685 ..     317     691 .. 0.71

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 1.1e-30
     Plavaka  21 wkseevkvegel..eeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereyt.......dekkg...ervysemmtgdwaweqq..ieekp. 104
                 w++++v+++ +l   ++ p+ + +   l fr   +v+k ++++   + +++y+P+r +        ++++    e vy e++t +   +    ++++p 
  CDO69407.1 334 WQHTDVTISVPLgkGADVPSRTFTISGLSFRPLEKVVKRVCESE-ASARFHYHPFRLLWqpppipsSSEDLpplEDVYGELYTSKVFRDAYeeLQQSPr 431
                 66666666555432333444444444455665555555555443.355567777665543444443112213347888888888887777655333332 PP

     Plavaka 105 ....tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpi.........pkl.kkikkskefrklfkrqlfHaclar 189
                          ++ ++ +sD T+l  f g  + +PvY+  Gn +k+ r k++ +a+  +ay+p            + ++   ++  ++ ++r+l+ a  + 
  CDO69407.1 432 epgcDLPRAIIALMPWSDSTHLADF-GTASLWPVYMQFGNQSKDDRAKPTAHACHHVAYIPKlpdeiqdfiHGFlEREGINPLLAH-CRRELMQAIWSL 528
                 113334578999999**********.***********************************8777775555333233333444455.788888888888 PP

     Plavaka 190 ile.pLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqg...wCpkctakkkelgdleeselrtreetlelleeaade........... 273
                 +l+ +  +a ++g+v++c dg +rr ++ +  y aDypE+vl+a ++      Cp+c ++k+++ +l   + r++++  +l+++  +            
  CDO69407.1 529 LLSdKFVAACRHGIVVKCYDGITRRLYIRIFTYSADYPEKVLLATVRDMgncPCPRCLVPKEKIAEL--GTSRDQDSRVRLMRRDDRArqttvqrarnl 625
                 876257999*************************************643334899********9886..245555555555544432234556666678 PP

     Plavaka 274 ............lkklwkeyglkgviepFwedlp...radihelltpDlLHqlikgvfkdH 319
                              ++l+k + l+++ + F ++l      + h+l+ pDl+H++  gv+k  
  CDO69407.1 626 ilekglgvnssaVEALLKPQSLVPTSNAFSDRLGpdiVPNFHSLFVPDLMHEWELGVWK-G 685
                 999999999988888*****************953336799****************99.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 5233.79
//
Query:       CDO69408.1  [L=203]
Description: hypothetical protein BN946_scf184791.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   13.2   0.1       0.14   12.2   0.1    1.5  1  DUF3847   Protein of unknown function (DUF3847)


Domain annotation for each model (and alignments):
>> DUF3847  Protein of unknown function (DUF3847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.1e-06      0.14       5      34 ..     115     144 ..     113     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.1e-06
     DUF3847   5 LkaelekaekklrqaehkekiLenrlkyle 34 
                 +k +leka+ kl +  ++++ L  rl+y+e
  CDO69408.1 115 CKDQLEKAQAKLTRLWNQINQLGGRLAYYE 144
                 899*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1551.32
//
Query:       CDO69409.1  [L=250]
Description: hypothetical protein BN946_scf184791.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-23   81.6   0.0    6.6e-23   81.4   0.0    1.0  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   3.7e-27   6.6e-23       2     216 ..      27     247 ..      26     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 3.7e-27
         DLH   2 daylatpkna..kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskva.eekvlddlkaavaylksvpevs 96 
                 d y+atp     k +vv+ +++ fG+   n k  ++ +a++G+  ++Pdl+ ++   p+d+ e+a+  +  + +++  e  +  ++a v +l++++   
  CDO69409.1  27 DSYVATPSGDyaKDKVVLYLHDGFGLPlVNNKLLCDDFARNGFRTIMPDLFNGDP-VPEDAMERADFDRVAWMNRHgPETWKPLVDAVVGALRAQG--- 121
                 789****99999***************977779*********************9.6888877777666655555415566677788888888888... PP

         DLH  97 tkkvgvvGfCmGGalalllaaevpevdaavafYG...lspekeleeaakikapilalfgeeDefipadevekleealkaanvd..lelkvYpgagHaFa 190
                    +g +G+C+G+  a++la +++  + +v+ ++     pe   ++ +++kap+l+   e D+ +++++  k +e l   + +  +e   ++g +H+Fa
  CDO69409.1 122 ATWIGTTGYCFGALPAWYLALKND-SKVTVVSHPamlRIPEDLEKYRDESKAPLLINSCETDPAFAQEAQAKADELLGGGKFAsgYERTYWEGCTHGFA 219
                 678********************5.9********874444444556789*******************9999999887655442278899********* PP

         DLH 191 ndsre..syneeaaedawervlelfkqv 216
                  + +     +++ +e a+e+++++fk++
  CDO69409.1 220 VRGDMsnPKVKAGKEGAFEATVKFFKKY 247
                 *998866889999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1690.24
//
Query:       CDO69410.1  [L=305]
Description: hypothetical protein BN946_scf184791.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-21   75.6   0.0    5.3e-21   75.2   0.0    1.1  1  NmrA            NmrA-like family
    1.1e-17   64.6   0.0    1.6e-17   64.0   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
    0.00012   21.2   0.0    0.00017   20.7   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    0.00055   19.5   0.0     0.0017   17.9   0.0    1.8  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00086   19.3   0.1      0.063   13.2   0.0    2.3  2  KR              KR domain
  ------ inclusion threshold ------
      0.088   12.7   0.2        1.7    8.5   0.3    2.1  2  ETF             Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   1.8e-24   5.3e-21       2     230 ..       5     226 ..       4     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.8e-24
                 EESSTTSHHHHHHHHHHHH..HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEE.EE---GG..S-HHHHHHHHHHHHHHHS-S CS
        NmrA   2 lviGaTGrqGksvvrallk..aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvv.fsvtgfy..skeiedgkklvdAakeaGvk 95 
                 +v+G TG +G++v ++llk     +v + + ++++ + +++ke+Gve+  gd  d +sl++a+ g+d   +++ ++   +  ++  k+ +dAak+ Gvk
  CDO69410.1   5 VVTGTTGGLGSQVFKYLLKlvPATDVIVSLYNPSG-ATQAIKESGVEIRRGDYGDPASLDKAFAGADKLlIISYPSIahELRVKHHKNAIDAAKRVGVK 102
                 699****************6555566666666655.6799**************************964155566557899999*************** PP

                 EEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHH CS
        NmrA  96 hfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikil 194
                 h+ y sl+ + d + a      + ++ +  e+y++++g+ yt+++ g++ e +   +  +++ +  ++e  v+++  ++  ++ + + eD G+ ++k++
  CDO69410.1 103 HVYYTSLAFAGDSVAA------VMQAHIDTERYLKESGLTYTIIREGIYSESYPL-YFGFFNPADGKDE--VIIPH-SDGGIAWV-SREDLGEGTAKLM 190
                 ***********98844......44777899*******************998754.5553444444444..44443.33335666.9***********9 PP

                 HHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EE CS
        NmrA 195 kdprklkgkriklagntlsgneivelfekkigktvk 230
                  +    +   +   +  ++++e++e ++k +g++v+
  CDO69410.1 191 VEGGYENQTLLFSGSRSITLKEVAEKISKLLGRNVQ 226
                 997777666666667889***************996 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   5.4e-21   1.6e-17       1     148 [.       8     147 ..       8     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 5.4e-21
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE.EES-..--TCCHHHHHHHHHHHHHHCT-- CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaV.vsal..ggggkdeegaknivdaakeagvk 91 
                     G tG+ G+++ k ll+    ++v +   np+ +++  +e+g+e+  gd  d+++l +a++gad   +++    +++ + + +kn++daak+ gvk
      CDO69410.1   8 GTTGGLGSQVFKYLLKLVpATDVIVSLYNPSGATQAIKESGVEIRRGDYGDPASLDKAFAGADKLlIISYpsIAHELRVKHHKNAIDAAKRVGVK 102
                     78**************998899999999*****999999************************751555554444447777************** PP

                     EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE- CS
  NAD_binding_10  92 RfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtd 148
                     ++ + s + +gd+            ++a+++a+   e++l++sgl++Ti+r g  ++
      CDO69410.1 103 HVYYTSLAFAGDS------------VAAVMQAHIDTERYLKESGLTYTIIREGIYSE 147
                     ***********73............56899*********************998544 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.9e-08   0.00017       1     117 [.       5     110 ..       5     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.9e-08
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 vvtG +G lG+++ k L++l ++ +v v   +  +   + +++++v+ +  gD  d ++l++a  g+d ++ + s+  +          +  vk  +n 
  CDO69410.1   5 VVTGTTGGLGSQVFKYLLKLVPATDVIVSLYN-PSGATQAIKESGVE-IRRGDYGDPASLDKAFAGADKLLII-SYPSI--------AHELRVKHHKNA 92 
                 8*********************9999776555.55555899999999.9********************9999.44444........456788999*** PP

   3Beta_HSD 100 leacvkagvrvlvYtSsa 117
                 ++a+++ gv+ + YtS a
  CDO69410.1  93 IDAAKRVGVKHVYYTSLA 110
                 ***********9998843 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.6e-07    0.0017       2     114 ..       5     108 ..       4     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.6e-07
                 EEETTTSHHHHHHHHHHHHCT..SE.EEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg..ye.vigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +VtG tG +Gs++ k+ll+     + ++ l + s a +  ++  +e+ ++d+ d+++l+++f+  ++d  + +          ++p+   e  ++   n
  CDO69410.1   5 VVTGTTGGLGSQVFKYLLKLVpaTDvIVSLYNPSGATQAIKESGVEIRRGDYGDPASLDKAFA--GADKLLII----------SYPSIAHELRVKHHKN 91 
                 7******************99855544455555444444444455******************..78877777..........6677777777888888 PP

                 HHHHHHHHTCTEEEEEE CS
   Epimerase  98 lleaarkagvkrllfls 114
                  ++aa++ gvk +++ s
  CDO69410.1  92 AIDAAKRVGVKHVYYTS 108
                 88888888885555544 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.1e-05     0.063       3      76 ..       4      70 ..       2     102 .. 0.78
   2 ?    4.0   0.0     0.014        42      11      57 ..     181     229 ..     178     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeik 76
                y++tG +GgLG ++ + l++   ++ v++s  ++ +      +++++++g+e+  ++ D  d++++ ++++ ++
  CDO69410.1  4 YVVTGTTGGLGSQVFKYLLKLVPATDVIVSLYNP-S----GATQAIKESGVEI--RRGDYGDPASLDKAFAGAD 70
                9*******************99666666666622.2....2345666766554..5777788888777777665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHH..S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE CS
          KR  11 gLGlelarwlaekg..arhlvllsRsaaadedskaliaelealgaevev 57 
                  LG  +a+ ++e g  +++l++ + ++ + ++ +++i++l  ++++  v
  CDO69410.1 181 DLGEGTAKLMVEGGyeNQTLLFSGSRSITLKEVAEKISKLLGRNVQLIV 229
                 69999********986677777777768889999999999988887665 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3   0.00056       1.7      49     113 ..      62     125 ..      54     127 .. 0.86
   2 ?    1.6   0.0     0.074   2.2e+02      76     115 ..     185     224 ..     177     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00056
                 CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC--SEEEEESSCC.HHHHHHHHHHHCT CS
         ETF  49 lrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlagatai.gkqvaprlAalLg 113
                 l +a a  Gadk++ ++ p+ a+ +  +  k   +++k  ++++v   + a+ g  va+ + a+ +
  CDO69410.1  62 LDKAFA--GADKLLIISYPSIAHELRVKHHKNAIDAAKRVGVKHVYYTSLAFaGDSVAAVMQAHID 125
                 677777..***************************************9999988888887777666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.074
                 HHHHHHHHHHHHC--SEEEEESSCCH.HHHHHHHHHHCT-E CS
         ETF  76 atakalaalikkedpdlvlagataig.kqvaprlAalLgvp 115
                  tak++++   + + +l + g+++i+ k+va  ++ lLg  
  CDO69410.1 185 GTAKLMVEGGYE-NQTLLFSGSRSITlKEVAEKISKLLGRN 224
                 566666666666.4599********66**********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2176.29
//
Query:       CDO69411.1  [L=477]
Description: hypothetical protein BN946_scf184791.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.007   16.6   9.9      0.011   16.0   9.9    1.3  1  EI24             Etoposide-induced protein 2.4 (EI24)
  ------ inclusion threshold ------
      0.051   14.0   0.2      0.051   14.0   0.2    1.7  2  CPBP             CPBP intramembrane metalloprotease
       0.82    9.4   4.1        1.6    8.5   2.9    2.0  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   9.9   1.8e-06     0.011       5     126 ..     247     384 ..     243     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
                 HHHHHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HH.HHCCTTSHH..... CS
        EI24   5 glglllsspkllallllplllnlllfllllvlllw.vllasllvllllllplwlfplvalllaapfygllaekv........ekrhlglvksla..... 89 
                 +++++ ++p+l+ ++l+   l+++ + ++++++lw v  a+l vl+l+ll  wl+ +v +l a  ++ +l  kv        + r  +l+ sl+     
  CDO69411.1 247 FIKQACTDPALWLHALQLAGLTAITLCAIAAFALWhVASAVLGVLALVLLCGWLICAVPVLSAVGICVTLLHKVvrwrqraaR-R--RLLLSLTrgdqp 342
                 57888999*******************9*99999*988889999999999999999777666666666666666566555431.1..223333345556 PP

                 ......HHHHHHHHHHHHHHHHHHHHHTTHHH....HHHHHHH CS
        EI24  90 ......eslkslllllllllvllplliPvvglilsplllswlt 126
                       +s+++l+ l ++l ++++ + +++g +l+p++l+   
  CDO69411.1 343 drrsgrSSIRRLVDLRPVLQQSMAAV-TYLGGVLAPWMLFAAL 384
                 6666669*****************97.9********9999765 PP

>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   8.5e-06     0.051      28      86 ..     259     318 ..      66     323 .. 0.65
   2 ?   -2.8   0.2       1.4   8.4e+03      39      51 ..     372     384 ..     357     402 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.5e-06
                 HHHHHHH.S-HHHHHHHHHHHHHCSGGGHHH..HHHHHHHHHHHHHHHHHTT-HHHHHHHH CS
        CPBP  28 lqllqergsstlailissilFglaHlpngps..vllaalaGlvlgylylktgsllaaillH 86 
                 l++lq   + t+++l + ++F+l+H++ ++   ++l++l+G++++++ + +   +++ llH
  CDO69411.1 259 LHALQLA-GLTAITLCAIAAFALWHVASAVLgvLALVLLCGWLICAVPVLSAVGICVTLLH 318
                 3334333.33888999999*********877645666777888777766665445555666 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHC CS
        CPBP  39 lailissilFgla 51 
                   +l+  +lF+++
  CDO69411.1 372 GGVLAPWMLFAAL 384
                 3333333333333 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.1     0.069   4.1e+02      11      49 ..     264     301 ..     259     303 .. 0.75
   2 ?    8.5   2.9   0.00026       1.6      14      61 ..     285     332 ..     271     344 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.069
  Phage_holin_2_4  11 aagnkatggGavvsfaGflasselialvGlavAliGlLv 49 
                       ag  a    a+ +fa +  +s +++++ l v l G L+
       CDO69411.1 264 LAGLTAITLCAIAAFALWHVASAVLGVLAL-VLLCGWLI 301
                      566667777899999999999999998854.56777776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00026
  Phage_holin_2_4  14 nkatggGavvsfaGflass.elialvGlavAliGlLvnWyYkreanRRa 61 
                      +   g+ a v + G+l  +  +++ vG++v l+  +v W   r+a RR 
       CDO69411.1 285 SAVLGVLALVLLCGWLICAvPVLSAVGICVTLLHKVVRWRQ-RAARRRL 332
                      5555566889999**976526889***************85.5556664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3467.19
//
Query:       CDO69412.1  [L=303]
Description: hypothetical protein BN946_scf184791.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-44  147.4   3.2    1.2e-16   60.3   0.0    3.7  4  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     7e-21   1.2e-16       3      95 ..       4     103 ..       2     105 .. 0.84
   2 !   57.8   0.1   4.2e-20   7.6e-16       4      95 ..     113     207 ..     110     209 .. 0.89
   3 ?   -0.8   0.0     0.083   1.5e+03       4      20 ..     215     231 ..     213     237 .. 0.81
   4 !   27.5   0.0   1.2e-10   2.2e-06      46      93 ..     246     293 ..     234     296 .. 0.91

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 7e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHH....HHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasal....kfvlyetlkrlll 94 
                 ls+++ +++Gglag++a+++ +P +v+Ktr+q+q++  +  + +    ++d+l k++++eGlrg  rGl+p+ + + p ++l    ++++ye  +r+l+
  CDO69412.1   4 LSTFEGFVCGGLAGCTAVTFSNPAEVAKTRMQLQGELMRRGGVKVysnVFDALIKTWRNEGLRGVQRGLGPAYVYQLPRKVLlngsRLGFYEPSRRWLN 102
                 688999***************************999866555444667***********************9998877765511116779999999998 PP

                 T CS
   Mito_carr  95 k 95 
                 k
  CDO69412.1 103 K 103
                 8 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 4.2e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS...STTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkks...skksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++l ++ aG+++ ++++++ +Pl +vKtr+q+ +     ++++++++++++l++i++eeGlrgl rG+ ++++r a+  ++++ +y   k+ll  
  CDO69412.1 113 TTLTSMSAGSISTVIGSCLGNPLFLVKTRMQAYSPVlpvGAQRYYKHAFHALSTIIREEGLRGLLRGIDAACFRGAIGGSVQLPSYLWAKQLLVS 207
                 6788999*************************776644455566666*******************************************99975 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.083
                 HHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavat 20 
                 s++ +ll++++ag+v  
  CDO69412.1 215 SMVTYLLSSSIAGVVLP 231
                 688999*******9865 PP

  == domain 4  score: 27.5 bits;  conditional E-value: 1.2e-10
                 SSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  46 aaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++ +d+l k++k+eGl g y+G ++ +lr+ap + +++++++ ++r +
  CDO69412.1 246 KNPFDCLWKTFKTEGLYGWYKGSTAHFLRIAPHTIITLTANDLIIRSY 293
                 4489**************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2149.72
//
Query:       CDO69413.1  [L=425]
Description: hypothetical protein BN946_scf184791.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-23   81.2  41.2    1.6e-21   76.6  41.2    2.5  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.13   12.3   0.2       0.13   12.3   0.2    4.5  4  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6  41.2   1.8e-25   1.6e-21       3     300 ..      14     381 ..      12     412 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.8e-25
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlga 99 
                  +++l+++  ++l++alp +++++l +s++ +++ l +yal      l+ Gr++d +G++r++l+g  +f ++  +++ + ++    l+v+ +l+G+ga
  CDO69413.1  14 GVTILNIFVNGALIIALP-TIGKALDFSEADLQWPLNVYAL-----LLLCGRIADVVGAKRMFLFGTGFFTIW-SIATgV-APNKvSLIVFVALTGVGA 104
                 5799**************.*******************999.....9999***********************.444436.444557************ PP

       MFS_1 100 galfpagaaliadwfpk.eergraigllsagfslGailgpllgg................llasslg...............Wravfyilaivsllafv 166
                 +a +p+g++++a  f   + ++rai+ l+ag ++G+i+g + gg                l                     W+++fyi +++++++fv
  CDO69413.1 105 AANTPTGISIFANHFESgPTKNRAIAALGAGQAVGYIVGLVGGGrravsdldsglkatrgL-----TvtahaggflcqdeklWPVIFYIQGGLAAVFFV 198
                 ***************************************9999988666666655555551.....0555555899999999***************** PP

       MFS_1 167 lfllllpeepperkrkspkeee......................kgtgpaplvp..............awkallkdpvl........w........ill 213
                 l+++ +p + + ++  ++++                        ++  ++p+vp              +w+  + ++ +        w          +
  CDO69413.1 199 LGVITIPSDVHHKRYTKGIDWVgaalsvggvglltfvlsesttvSRGWKTPWVPallvvsllilvafvVWEWYRERRDMsvimpvslWtkpgtkmaPTI 297
                 97777766666666665555449*****************99998888888888888777777777774444444443333455555677777778899 PP

       MFS_1 214 ialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssa 300
                 ++++l+++ ++ ++++  l++q+v+g +   ++++    +a++++ + ++ag+l+  l     +l++l+ll ++a+ l+l+   ++a
  CDO69413.1 298 AVVFLAWASYNCMSYFANLFFQQVRGDD-PAQTSFETIPFAIMAFLANVIAGALLGVLRG--DILIGLGLLGTMAAPLILALIDEHA 381
                 999999999999****************.677777777777777777********88766..5555555555555555555555222 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.5  11.7         2   1.8e+04      47      81 ..      71     104 ..       7     163 .. 0.74
   2 ?   -2.9   1.4      0.76   6.8e+03      41      52 ..     191     202 ..     184     204 .. 0.54
   3 ?   12.3   0.2   1.4e-05      0.13      31      87 ..     211     271 ..     208     284 .. 0.77
   4 ?   -6.7   9.7         2   1.8e+04      38      74 ..     338     376 ..     296     395 .. 0.70

  Alignments for each domain:
  == domain 1  score: -9.5 bits;  conditional E-value: 2
  Phage_holin_3_6  47 allalllllvalalalaalwlaalivaavllvlag 81 
                      ++ + ++ ++ +a ++ a+    liv+++l  +++
       CDO69413.1  71 LFGTGFFTIWSIATGV-APNKVSLIVFVALTGVGA 104
                      3333333333334444.344445555555555554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.76
  Phage_holin_3_6  41 gaagvlallall 52 
                      g+a+v+ +l+++
       CDO69413.1 191 GLAAVFFVLGVI 202
                      445555555444 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 1.4e-05
  Phage_holin_3_6  31 kragsgagllgaagvlallalllllvalalala.a...lwlaalivaavllvlagvlalvg 87 
                      kr  +g+ ++gaa+ ++ ++ll++++     ++     +w+ al+v  +l+++a v+  + 
       CDO69413.1 211 KRYTKGIDWVGAALSVGGVGLLTFVLSESTTVSrGwktPWVPALLVVSLLILVAFVVWEWY 271
                      67888899999999999999988888886555433588*******9888888888776555 PP

  == domain 4  score: -6.7 bits;  conditional E-value: 2
  Phage_holin_3_6  38 gllgaagvlallalllllvalalala.a.lwlaalivaa 74 
                      +++++a v+a   l++l   ++++l+ +  ++a li+a+
       CDO69413.1 338 IMAFLANVIAGALLGVLRGDILIGLGlLgTMAAPLILAL 376
                      444444444444444444444444443344455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3063.36
//
Query:       CDO69414.1  [L=401]
Description: hypothetical protein BN946_scf184791.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3019.18
//
Query:       CDO69415.1  [L=488]
Description: hypothetical protein BN946_scf184791.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-30  105.7  40.4    2.9e-30  105.4  40.4    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4  40.4   1.6e-34   2.9e-30       2     351 ..      50     412 ..      49     414 .. 0.84

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 1.6e-34
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +l+++ls+l+r+++g a    la dl++++ +++l  +++++ ++++ +p    +  + + r++ + ++++++ ++ ++f+ s+  ll +r++ G++++
  CDO69415.1  50 SLLYLLSFLDRTNIGNAKVAGLAADLHLTGLQYNLCSAIFFIPYCFFEVPSNLAMKIMKPSRWIPIIMFCWGIVMISMAFVKSFGGLLTARIFLGMTEA 148
                 6899**********************************************************************66666866666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 +lfp++  ++  w+p+  +++ +gl+ +++ ++ ++g ll+ ++    g      W+++f++ +i++++++++ ++ +++ p +    s++e+      
  CDO69415.1 149 GLFPGVTFYLCIWYPRGAQAQRVGLFLSAATVAGAFGGLLAFAIEKMDGirglrgWSWIFLLEGILTAVVAIISYFAMYDYPENATFLSDAERTwliet 247
                 *************************************999876665555888888*****************988888777777777777777688888 PP

       MFS_1 189 kgtgpaplvp.....awkallkdpvlwillialllf.ffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlll 279
                  ++ +++l++      +++ l+d + + lli+++lf  + ++++  +lp++    lg+s  +   a ll+  +++vg ++ +++g lsdrl    r  +
  CDO69415.1 248 LRKDNTNLSKnfkwkFLRQALADVHSY-LLIGIYLFlLIPTYAFALFLPTI-INGLGFSssN---AQLLSIPPYVVGGVSTIVIGMLSDRLRM--RGPF 339
                 444555555544233244444444333.333333331236677*******7.*******432...333366677888888**********766..**** PP

       MFS_1 280 allllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggal 351
                 +l++l+ a++g+++l +t+s+ +++++ v++ +gl+  ++++la+a  ++ ++ ++g +++ +  +g+lgg+ 
  CDO69415.1 340 ILGGLISALIGYVILYATKSPGAGYAGTVIAALGLFPSVACILAWAGGNMgGEVKRGVVIAMVIGFGNLGGVA 412
                 **************************************************77789999999999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.59
# Mc/sec: 2488.71
//
Query:       CDO69416.1  [L=753]
Description: hypothetical protein BN946_scf184791.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-55  186.0   1.5    1.7e-29  103.2   0.0    2.9  3  HMGL-like     HMGL-like
      9e-11   41.8   0.5    1.2e-05   25.3   0.0    2.5  2  LeuA_dimer    LeuA allosteric (dimerisation) domain
     0.0043   17.0   0.3      0.018   15.0   0.1    2.2  2  Ribosomal_S5  Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   2.9e-33   1.7e-29       2     156 ..      33     201 ..      32     206 .. 0.97
   2 !   82.1   0.1   7.9e-27   4.7e-23     181     260 ..     200     281 ..     198     284 .. 0.94
   3 ?   -2.0   0.2      0.34   2.1e+03     216     236 ..     675     695 ..     673     701 .. 0.89

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.9e-33
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH....TT-SEEEEEE CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar...ilalvrarekdikaavealkgagakrvhvfi 97 
                 +++++t+LRDG+qal+++++ve+k++ ++ L++ g++eiEv fpaase++f +vr +++ ++ ++   +++l  ar ++i +++e++ ga  +++ +f 
  CDO69416.1  33 PIWLSTDLRDGNQALAQPMTVEQKRTFFRHLVQCGFKEIEVAFPAASETEFSFVRSLIEDGEVPDdvwMQVLTPARAELIHRTFESIAGARQVIFMLFH 131
                 689*************************************************************99999****************************** PP

                 ES-HHHHHHHHS.STHHHHHHHHHHHHHHHHHTT-E..........TTT-BTTTBS--HHHHHHHHHHHH CS
   HMGL-like  98 atselhlkaklk.kdreevakkaeeavkaarslgkd..........velsledasrtdleflaevveaae 156
                 a+   +++++++ k+r+e+++ a+ +++ +r l+++            +++e +s++++ef++e++ ++e
  CDO69416.1 132 AAAPCFREVVFGgKSRAEIIELATSHTRIVRALADEyrakygtkfrFLYGVEAFSQSEPEFVVELCTKIE 201
                 ***********549******************************99999****************98875 PP

  == domain 2  score: 82.1 bits;  conditional E-value: 7.9e-27
                 HHHHHHHS-...GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHH CS
   HMGL-like 181 isalkervk..dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsi 260
                 i+++ ++++  d++i+s+H+Hnd+G+Ava+++++++aGadr++g+++G+Ger Gn++l +l+++l+++gv  gld++++ ++
  CDO69416.1 200 IEYFCTHMEnrDEMIVSLHTHNDRGTAVAASELGLMAGADRIEGCLFGNGERCGNVDLITLALNLYTQGVPCGLDFSDMPRT 281
                 778888888889*****************************************************************99876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.34
                 T--EEEEBTTS--SSBBB-BH CS
   HMGL-like 216 GadrvdgtvnGlGeraGnaal 236
                 G d v++ + Gl++ aG +a+
  CDO69416.1 675 GSDAVSCLLTGLSALAGFVAI 695
                 899**************9987 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.9e-09   1.2e-05      13     133 .]     416     554 ..     387     554 .. 0.82
   2 !   13.9   0.4   6.2e-06     0.037      43     129 ..     662     748 ..     646     750 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.9e-09
                 XXXXX....XX--EEEEEEEE.EEETTCEEEEEEEEEE..TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEEEEEEE-... CS
  LeuA_dimer  13 delle....aeerlkleklqv.ssgedelstatvklevk.dgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaevrVelev... 102
                 + +      +++rl l++++v + g++ ++ at +  +  dg++ + ++eG  p++A+++A+++ +g + ++ + + +a    +  +  + V l +   
  CDO69416.1 416 TYYHLdegtNHGRLALQSFEVaHAGSEREPVATFQGVMSdDGQTFTLRGEGPTPLAAFFHAVQSRTGLQYSVVETHQRASLDPKSGEIVSFVLLTKiqs 514
                 3333366646799*******9445666888999886666699999999**************************9999999999999999999998787 PP

                 .........-GGGEEEEEEEESSHHHHHHHHHHHHHHHHS CS
  LeuA_dimer 103 .........ddgkkvsgvGvdsdiveASlkAlisalnrll 133
                          + + + +g+G+d   +++ ++A +sa+n+ll
  CDO69416.1 515 pgvirngdaHSQVTSWGIGIDGERTRSLIRAALSAMNKLL 554
                 88887665444555***********************986 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.2e-06
                 EEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--.TT-TT--EEEEEEEE--GGGEEEEEEEESSHHHHHHHHH.HHHH CS
  LeuA_dimer  43 levkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhai.tegtdaqaevrVelevddgkkvsgvGvdsdiveASlkAl.isal 129
                 +++  g++k+++++G+ +v+ ll  l+  l   + +   +v+ + ++  +    + V++ +++++  +gvG+d+d ++A l+A  i a+
  CDO69416.1 662 VQI-HGTQKQVEGSGSDAVSCLLTGLSA-LAGFVAIRGIEVQPVlGSARGRHNVAFVQVGSEKQQVGWGVGLDEDLTTAILQAAlIAAV 748
                 334.677788888888888888888888.6666677777777541455777778889999889999***************97514555 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   6.5e+03       5      17 ..     661     673 ..     659     682 .. 0.81
   2 !   15.0   0.1     3e-06     0.018      24      57 ..     713     746 ..     699     750 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
                   EEEEEEEEEEETT CS
  Ribosomal_S5   5 vlkikrvqkvtkg 17 
                   +++i+ +qk++ g
    CDO69416.1 661 TVQIHGTQKQVEG 673
                   689999****976 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3e-06
                   EEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHH CS
  Ribosomal_S5  24 salvvvGdgnGlvGlGvgkakevatAirkAiekA 57 
                    a+v vG ++ +vG+Gvg  ++ +tAi +A   A
    CDO69416.1 713 VAFVQVGSEKQQVGWGVGLDEDLTTAILQAALIA 746
                   599************************9997666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 4057.31
//
Query:       CDO69417.1  [L=331]
Description: hypothetical protein BN946_scf184791.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-34  117.9   0.0    7.4e-34  117.5   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    0.00011   20.8   0.0    0.00026   19.7   0.0    1.6  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00021   20.7   0.0    0.00047   19.6   0.0    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0027   17.0   0.0     0.0038   16.6   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0099   14.9   0.0      0.019   13.9   0.0    1.4  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   2.1e-37   7.4e-34       2     189 ..      87     269 ..      86     272 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 2.1e-37
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    ++inLg++ + +     +++ ++ a+ e al+  + n y p +g p l++a+ +f+g++ +++l++++++  +sGa+++ +a  fl    +gde++
     CDO69417.1  87 ECINLGQGYMNFP----PPKWARAAAVE-ALDVTEGNHYAPARGRPRLRKAVKDFYGTQFGKELDPDREIMISSGANQAWAA--FLS---AGDEVI 172
                    79********998....88888888888.**********************************************9977654..334...89**** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEET...........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTE CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyse...........edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynl 182
                    +++p+++ y +++  +gg+ v++pl+++            ++++d+++l +a++       +tk+i+++sphNP G+v++++ele +++l++ + +
     CDO69417.1 173 MFEPFFDLYLPAIAFNGGKPVYVPLHPSaetvpgrkvgkRSWTIDFDELRRAITP------RTKMIVLNSPHNPLGKVFSRAELEGIAQLVRDHDI 262
                    *******************************************************......*********************************** PP

                    EEEEEET CS
  Aminotran_1_2 183 llfvDea 189
                    ++++De+
     CDO69417.1 263 MVISDEV 269
                    ******7 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.1e-08   0.00026     125     175 ..     216     269 ..     148     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.1e-08
                      TSHHHHHHHCCTTEEEEEEESS-TTTT--...--HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 125 sdleelekaikentklvylEtptnpllkv...vDiekiaklakkagvlvvvDnt 175
                       d++el++ai+++tk++ l +p npl kv   + +e ia+l+++++++v+ D +
       CDO69417.1 216 IDFDELRRAITPRTKMIVLNSPHNPLGKVfsrAELEGIAQLVRDHDIMVISDEV 269
                      57899*********************999444589***************9976 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-07   0.00047      61     144 ..     166     267 ..     151     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
                      TTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-T............TTSSB-GGGCGGG--TTEEEEE...EB-GGGB--...-HHHHHHHHHH CS
  DegT_DnrJ_EryC1  61 gpgdeVIvpsltFvatanavlelgakpvfvDvdp............dtynidpaaieaaitertkaIl...pVhlyGqva...dmdalkaiaak 136
                      ++gdeVI+    F     a++ +g kpv+v  +p             +++id +++++ait+rtk I+   p + +G+v+   +++ + ++ ++
       CDO69417.1 166 SAGDEVIMFEPFFDLYLPAIAFNGGKPVYVPLHPsaetvpgrkvgkRSWTIDFDELRRAITPRTKMIVlnsPHNPLGKVFsraELEGIAQLVRD 259
                      467888888888888888888888888888655422222222222268*******************9444457899986555899999999** PP

                      CT-EEEEE CS
  DegT_DnrJ_EryC1 137 hglkvieD 144
                      h+++vi+D
       CDO69417.1 260 HDIMVISD 267
                      ******99 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06    0.0038     107     167 ..     214     267 ..     156     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
                      TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 107 GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                       ++d+++l++ai++      ++k+i+l   +n   G+v s +el+ +a+++++++i ++ D
       CDO69417.1 214 WTIDFDELRRAITP------RTKMIVLNSPHNP-LGKVFSRAELEGIAQLVRDHDIMVISD 267
                      57999999999999......599*********6.8**********************9988 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.3e-06     0.019     123     177 ..     212     269 ..     208     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-06
                  TTSCBEGGGHHHH--TTEEEEEEESBETTTTEB-...-HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5 123 eegeldldelekllnektklvaithvsnvtGtiq...pveeigklakkkgalvlvDaa 177
                  + +++d del+ +++++tk++ ++   n +G ++   ++e i++l+++++++v+ D +
   CDO69417.1 212 RSWTIDFDELRRAITPRTKMIVLNSPHNPLGKVFsraELEGIAQLVRDHDIMVISDEV 269
                  5689***************************9652337999*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2290.63
//
Query:       CDO69418.1  [L=97]
Description: hypothetical protein BN946_scf184791.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.18   10.9   0.0       0.19   10.9   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.1e-05      0.19     305     363 .]       9      89 ..       3      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.1e-05
                    SSEEEEEETHH..............CHHHHHHH..HHHTCTEEEEEGGGGTS.......TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 305 gmflltdlsae..............takelskk..Lleevgvyvtpgtsftv.......pgrlRitvAglteeeleelveal 363
                     +f+l  +s+               +ak++  +  ++++ gv ++p+++f++        +  R+++ + + ++l+ ++e+l
     CDO69418.1   9 SYFVLLNISRVrwpedyefpksldgRAKDFKAAwfIANHIGVSCIPVSEFYCdehmhigANYARFSF-CKDVDTLRTAAERL 89 
                    56666666666777666666667777777777799************************99******.************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 694.78
//
Query:       CDO69419.1  [L=1152]
Description: hypothetical protein BN946_scf184791.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-16   60.2   5.7    2.6e-16   60.2   0.0    3.3  3  Dynamin_N      Dynamin family
    1.5e-06   28.3   0.0    0.00054   20.0   0.0    2.8  2  MMR_HSR1       50S ribosome-binding GTPase
    0.00039   20.9   2.6    0.00056   20.4   0.0    2.6  2  ABC_tran       ABC transporter
    0.00042   20.3   0.3     0.0016   18.3   0.1    2.1  2  RsgA_GTPase    RsgA GTPase
     0.0026   18.1   0.1      0.027   14.8   0.0    2.8  2  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.021   14.0   0.0      0.047   12.8   0.0    1.5  1  DUF815         Protein of unknown function (DUF815)
      0.024   13.7   0.1      0.059   12.4   0.1    1.6  1  T2SSE          Type II/IV secretion system protein
      0.033   14.3  11.9      0.044   13.9   2.3    2.9  2  ADIP           Afadin- and alpha -actinin-Binding
      0.034   13.5   0.1       0.12   11.7   0.1    1.9  1  AIG1           AIG1 family
      0.046   13.0   0.0        0.1   11.9   0.0    1.6  1  Zeta_toxin     Zeta toxin
      0.069   12.5   0.2       0.21   10.9   0.0    1.8  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.082   11.9   0.1       0.96    8.4   0.1    2.7  2  IIGP           Interferon-inducible GTPase (IIGP)
      0.083   13.3   3.2       0.18   12.2   0.0    3.2  3  AAA_16         AAA ATPase domain
       0.11   12.3   0.0       0.24   11.2   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
       0.11   12.9   0.1       0.11   12.9   0.1    3.4  2  AAA_23         AAA domain
       0.52   10.6   7.7        5.3    7.3   0.9    3.0  2  Spc24          Spc24 subunit of Ndc80
       0.97    9.0   9.2        5.2    6.6   1.3    2.6  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
        1.4    9.5  19.1       0.61   10.6   1.5    3.0  2  APG6_N         Apg6 coiled-coil region
        1.5    7.8  15.8        3.7    6.6   1.5    2.4  2  Atg14          Vacuolar sorting 38 and autophagy-related subu
        7.7    7.0  13.5        5.9    7.4   4.5    3.5  3  ZapB           Cell division protein ZapB


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   2.8e-19   2.6e-16       1     151 [.     128     377 ..     128     397 .. 0.77
   2 ?   -2.8   0.2       6.3   5.6e+03      52      84 ..     428     460 ..     402     489 .. 0.50
   3 ?   -2.5   0.2       5.3   4.7e+03      58      86 ..     618     647 ..     574     690 .. 0.63

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2.8e-19
                 EEEEEBTTTTHHHHHHHHHTS--S-.--SSS---S-EEEEE.......................................................... CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilp.rgpnptTrrplelql.......................................................... 40 
                 iav+G++ +GKSS+lna+l e+i p +g + +T  ++e+ +                                                          
  CDO69419.1 128 IAVCGATGAGKSSLLNAILDENIVPtSGMQACTTVVTEIMHhqkstidgkihfltedewrdelkvltddliggdghvkhitdlrsaagvawakihavyp 226
                 89***********************67788***********8888888888888888888888888888888888888888888888888888888888 PP

                 ...............................CCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS................... CS
   Dynamin_N  41 ...............................geeeeaseravkeelkekekkledfsevreeieketekiagankgiskk................... 89 
                                                g          + e  +  +  + +++++++i+++ ++ + ++k +++k                   
  CDO69419.1 227 sisqdqlaqlsidqiltsepttkcieitsllG----------TTEHVSAPDSKTFAKALNKYIDAKGQTQHATKKPTKDKnkmgeagdnpsaywplirq 315
                 88777777777777775544433333332222..........333333344444455555555555555554444444447777778999999****** PP

                 -EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHH CS
   Dynamin_N  90 villkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealfla 151
                 v ++++ + l  g  lvDlPG+ + n+ + +++++y+ k+d + +v +   ++ ++ a++l 
  CDO69419.1 316 VCIWCNSQALSTGAILVDLPGVADANAARNAIAENYMGKCDRVWVVAPITRAVDDKTARDLM 377
                 999***********************************************999999988886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.3
                 .SSEEEET-EB--CHHHHHHHHHHHHHHHTSSS CS
   Dynamin_N  52 keelkekekkledfsevreeieketekiagank 84 
                 k e k+ +k+ +++++ r+ ++++ +++  ++ 
  CDO69419.1 428 KTETKDWKKRKSEAEDARRDVKARLKQSRATLR 460
                 222222244444444444444444444433333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5.3
                 E.T-EB--CHHHHHHHHHHHHHHHTSSSS- CS
   Dynamin_N  58 k.ekkledfsevreeieketekiagankgi 86 
                   +++ + +s++ ++++++++++a  +k  
  CDO69419.1 618 AiKDDRTCLSDLSRQCKQASAELAALKKHQ 647
                 334555555555555555555555433333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     6e-07   0.00054       2      40 ..     128     167 ..     127     209 .. 0.85
   2 ?    5.2   0.0     0.024        21      31      86 ..     283     365 ..     254     396 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6e-07
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegr 40 
                 +a+ G + +GKS+L+na+++e  + +s ++ +T+ ++e+ 
  CDO69419.1 128 IAVCGATGAGKSSLLNAILDEnIVPTSGMQACTTVVTEIM 167
                 89******************96688888888887776664 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.024
                 TSSSSEEEEEEEETTEE...............................EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  31 gtTrdinegrvklkgke...............................ielvDtpGliegaseekglgkaflaleeadlillvvdas 86 
                 g T++ +++  k k  +                                +lvD+pG+ + +  ++ +++++    ++d + +v  ++
  CDO69419.1 283 GQTQHATKKPTKDK--NkmgeagdnpsaywplirqvciwcnsqalstgAILVDLPGVADANAARNAIAENYMG--KCDRVWVVAPIT 365
                 44444444433311..1123344456677777777777777777777799******55533333356666654..788888887766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.3e-07   0.00056       9      80 ..     123     202 ..     115     277 .. 0.68
   2 ?   -1.6   0.8       3.9   3.5e+03      86     120 ..     446     480 ..     401     580 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.3e-07
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEET..TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkp.teGeilld..gkdlkeqeleslrkeigvlpqepqlfpeltvren......e 80 
                  + +++a+ G +GaGKS+Ll++++ +    t+G   +    +++ +++++  + +i +l+++ +  +el+v +        
  CDO69419.1 123 APATMIAVCGATGAGKSSLLNAILDENIVpTSGMQACTtvVTEIMHHQKSTIDGKIHFLTED-EWRDELKVLTDdliggdG 202
                 57789******************988765377755333224555557778888888888887.444444444444555441 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.9
                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvala 120
                  ++ ++l+++  + +  +++++ L  G+ +r+ l 
  CDO69419.1 446 RDVKARLKQSRATLREYRDHMKALKNGESVRITLT 480
                 33333333333333333333455555555555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.8e-06    0.0016      88     128 ..     113     154 ..      85     174 .. 0.78
   2 ?   -3.3   0.0       8.1   7.2e+03     149     162 ..     325     338 ..     323     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++l++lk++ +   +++++G +G+GKS+L+na+l e+ + t+
   CDO69419.1 113 KELNRLKSQGAPaTMIAVCGATGAGKSSLLNAILDENIVPTS 154
                  56778888877767889****************998655554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.1
                  ETTTEEEESS-SSS CS
  RsgA_GTPase 149 laegglliDtPGfr 162
                  l++g++l+D PG+ 
   CDO69419.1 325 LSTGAILVDLPGVA 338
                  67899*******96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-05     0.027       5      37 ..     125     156 ..     121     195 .. 0.78
   2 ?   -3.1   0.1       9.5   8.5e+03      37      70 ..     465     507 ..     432     525 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee 37 
                 a++++v+G +G+GK+ ll+ +l+++ +++   +
  CDO69419.1 125 ATMIAVCGATGAGKSSLLNAILDEN-IVPTSGM 156
                 789******************9997.5544444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.5
      AAA_22  37 e....erpevvfvtlpsst.....sskdllrellralglelka 70 
                 +    ++ e v++tl++++     s +d +++l ++ +le ++
  CDO69419.1 465 HmkalKNGESVRITLTQPSlvqcsSGSDSCSDLDSNSNLEESD 507
                 1334555555666666665555544445566666666665555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.3e-05     0.047      43      76 ..     115     148 ..      78     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-05
      DUF815  43 nteqfleglpannvLLwGarGtGKSslvkallne 76 
                   +   +g+pa  + + Ga G+GKSsl+ a+l e
  CDO69419.1 115 LNRLKSQGAPATMIAVCGATGAGKSSLLNAILDE 148
                 33334689**********************9987 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.6e-05     0.059     127     152 ..     123     148 ..      71     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.6e-05
       T2SSE 127 rerglilvsGgTgsGKttllyallke 152
                 +   +i v G+Tg GK+ ll+a+l e
  CDO69419.1 123 APATMIAVCGATGAGKSSLLNAILDE 148
                 45789******************975 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.3   4.9e-05     0.044      63     123 ..     411     471 ..     393     476 .. 0.91
   2 ?    4.2   2.2     0.046        41      50     111 ..     593     654 ..     590     664 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-05
        ADIP  63 rkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlkn 123
                  + e e+e+++++i rlkt++++ +++ + ++ + r+ +++lk+  ++l++ ++ ++ lkn
  CDO69419.1 411 LDDEPELENMEAEIARLKTETKDWKKRKSEAEDARRDVKARLKQSRATLREYRDHMKALKN 471
                 5678899***********************************************9988776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.046
        ADIP  50 rdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqkl 111
                 +d + +e+ + t+  l+a +  l ++i+   t l++l r+++++ a+++ l+k + ++++k+
  CDO69419.1 593 EDVADEELEEVTVDILKAKKVELAQAIKDDRTCLSDLSRQCKQASAELAALKKHQSEAQKKM 654
                 66667777777778888888888888888889999999999999999999998888887775 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00013      0.12       3      48 ..     128     176 ..     126     179 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                 EEEESSTTSSHHHHHHHHHTS--SS--T...TTS---SS-EEEEEEETT CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkkaFeskl...saqsvtkkcqkksrtwdg 48 
                 i + G tg+GkS+  N+il++++  ++    +++ vt+ ++++++t dg
  CDO69419.1 128 IAVCGATGAGKSSLLNAILDENIVPTSGmqaCTTVVTEIMHHQKSTIDG 176
                 6789******************976553011344556666666666666 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011       0.1       6      39 ..     113     148 ..     108     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
  Zeta_toxin   6 kdkk.ypsqerP.klillgGqpGAGKselaellkde 39 
                 k+ +  +sq  P ++i + G++GAGKs+l++++ de
  CDO69419.1 113 KELNrLKSQGAPaTMIAVCGATGAGKSSLLNAILDE 148
                 55566678877725788***************9988 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00023      0.21      40      60 ..     126     146 ..      99     150 .. 0.78
   2 ?   -2.7   0.0       3.3     3e+03      97     133 ..     628     664 ..     601     680 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
                   .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                     + v+Gatg GKS  ln+++
    CDO69419.1 126 TMIAVCGATGAGKSSLLNAIL 146
                   3689**************986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
                   S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH CS
  FtsK_SpoIIIE  97 avatdperalraleeLvkemeeryalfreagvrsiaa 133
                       + ++a++ l++L k+  e++++++++   +++ 
    CDO69419.1 628 DLSRQCKQASAELAALKKHQSEAQKKMNAFCSLKRSE 664
                   5667889999999999999999999998876555555 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0011      0.96      33      55 ..     123     145 ..      91     170 .. 0.83
   2 ?   -0.7   0.0      0.63   5.7e+02      89     179 ..     330     424 ..     327     434 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
                 T--EEEEEEESTTSSHHHHHHHH CS
        IIGP  33 saklkiavtGdsGnGkssFinaL 55 
                      iav G +G+Gkss +na+
  CDO69419.1 123 APATMIAVCGATGAGKSSLLNAI 145
                 45568****************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.63
                 EEEEE--GGGSSSSHHHHHHHTTGGG-SEEEEEESSS--HHHH...HH...HHHHHHTT-EEEEEEE-HHHHHHHHHHHSSST--HHHHHHHHHHHH CS
        IIGP  89 vlWDLPGlGatafsvesYleemkfseyDlfiiiaserFssndv...kl...akaiqrmrkrFYvvrtKlDsDlsneqkakpktfkkekvLqsireni 179
                 +l DLPG+  ++    + + e  ++++D + ++a      +d    +l   a  +q m     ++ tK D D+s ++  +  ++++e  L+++   i
  CDO69419.1 330 ILVDLPGVADANAAR-NAIAENYMGKCDRVWVVAPITRAVDDKtarDLmgdAFRMQLMMETITFIATKCD-DVSCSEVIRSLSLDDEPELENMEAEI 424
                 577999997666544.456666788888888877533332222011222336788999999999999998.88888888888888888888877666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.18      20      46 ..     120     147 ..     107     286 .. 0.88
   2 ?   -1.7   0.1       3.6   3.2e+03      54     107 ..     391     436 ..     373     529 .. 0.59
   3 ?   -0.8   0.5         2   1.8e+03      67     106 ..     918     968 ..     858    1129 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
      AAA_16  20 rsgrp.elvllsGesGvGKsslvrellr 46 
                 ++g p  ++ + G+ G GKssl++++l+
  CDO69419.1 120 SQGAPaTMIAVCGATGAGKSSLLNAILD 147
                 4556689*****************9996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.6
      AAA_16  54 iflrgkcdqlesaipysalaqalareellrqllde..aesaeleawrekleeala...a 107
                  f+++kcd+                 e++r l  +  +e  + ea  ++l+++++    
  CDO69419.1 391 TFIATKCDDV-------SCS------EVIRSLSLDdePELENMEAEIARLKTETKdwkK 436
                 5677777777.......122......333333333112222222222222222223321 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2
      AAA_16  67 ipy....sa.laqalareellrqllde.................aesaeleawrekleeala 106
                 +p+    s  +a+++ +++l++  +++                 +          +l+e+++
  CDO69419.1 918 TPFmrqiSRsWAKVF-ASDLFASFEQAtikvvnelteeaanfavP----------QLKERAR 968
                 555555544466666.33666666666443333322222222111..........2222222 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.24      24      42 ..     127     145 ..     113     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                 ++ + G++G+GKS+ll Ai
  CDO69419.1 127 MIAVCGATGAGKSSLLNAI 145
                 67789***********998 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00013      0.11      21      39 ..     127     145 ..     123     147 .. 0.90
   2 ?   -2.1   3.1       5.1   4.5e+03     154     186 ..     416     460 ..     370     473 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
      AAA_23  21 ltlItGpNGaGKTTildAi 39 
                 + +++G +GaGK+++l+Ai
  CDO69419.1 127 MIAVCGATGAGKSSLLNAI 145
                 5689**************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.1
      AAA_23 154 rleelekeleeledekkllekl............eqekekekele 186
                 +le++e e+  l++e k  +k+             ++k+ +++l 
  CDO69419.1 416 ELENMEAEIARLKTETKDWKKRkseaedarrdvkARLKQSRATLR 460
                 566666666666666655555532222222222222233333333 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.0     0.021        18      12      43 ..     416     447 ..     408     478 .. 0.62
   2 ?    7.3   0.9    0.0059       5.3       2      48 ..     608     654 ..     607     678 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
       Spc24  12 elsdleselesleselaelkeeleeleeesee 43 
                 el+++e+e+ +l++e +++k++  e e+ + +
  CDO69419.1 416 ELENMEAEIARLKTETKDWKKRKSEAEDARRD 447
                 44555555555555555555555555555444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0059
       Spc24   2 ldnekfriakelsdleselesleselaelkeeleeleeeseekeser 48 
                 l+ +k+++a++++d  + l++l+ + ++  +el+ l+++++e ++++
  CDO69419.1 608 LKAKKVELAQAIKDDRTCLSDLSRQCKQASAELAALKKHQSEAQKKM 654
                 67899***********************************9966665 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.3    0.0058       5.2      76     129 ..     417     470 ..     383     482 .. 0.88
   2 ?    5.9   1.4    0.0098       8.8      97     146 ..     605     654 ..     592     663 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0058
  PI3K_P85_iSH2  76 keaqehEieklqenleqlksrlkelhsskekLeedlkqqkeeereleReinalk 129
                     e  e+Ei +l++  ++ k+r +e ++++++++  lkq  +  re    + alk
     CDO69419.1 417 LENMEAEIARLKTETKDWKKRKSEAEDARRDVKARLKQSRATLREYRDHMKALK 470
                    455699***************************************999999998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0098
  PI3K_P85_iSH2  97 lkelhsskekLeedlkqqkeeereleReinalkpellqLqkrkdkylewL 146
                    ++ l+++k +L +++k   +    l R+  ++  el  L+k + + ++++
     CDO69419.1 605 VDILKAKKVELAQAIKDDRTCLSDLSRQCKQASAELAALKKHQSEAQKKM 654
                    67899***********************************9988777665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00068      0.61      46      94 ..     414     462 ..     390     480 .. 0.70
   2 ?    8.8   4.0    0.0025       2.2      48     117 ..     596     667 ..     557     670 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00068
      APG6_N  46 deeleeleeeleklekeeeelleeLkelekereeleaelaaleeeleal 94 
                 + ele+ e e+++l+ e ++  +   e+e++r++++a l++ +++l++ 
  CDO69419.1 414 EPELENMEAEIARLKTETKDWKKRKSEAEDARRDVKARLKQSRATLREY 462
                 3467777777777777777777777777777777777777777666654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0025
      APG6_N  48 eleeleee.leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne.lqlellelee 117
                  +eelee  ++ l++++ el + +k+  +  ++l ++ +++++el+al++ + +  ++ n+  +l+ +e+ +
  CDO69419.1 596 ADEELEEVtVDILKAKKVELAQAIKDDRTCLSDLSRQCKQASAELAALKKHQSEAQKKMNAfCSLKRSEFSK 667
                 22333332355599999999999999999*****************************99967888888765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.0    0.0063       5.7      57     127 ..     412     481 ..     396     543 .. 0.74
   2 ?    6.6   1.5    0.0041       3.7      61     113 ..     597     652 ..     568     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0063
       Atg14  57 qledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnelee 127
                 ++e +++n  a + +lk+++ d ++r++e +d ++  k+++++ +++l++++d +k  +   es++  l +
  CDO69419.1 412 DDEPELENMEAEIARLKTETKDWKKRKSEAEDARRDVKARLKQSRATLREYRDHMKALKNG-ESVRITLTQ 481
                 5678999999*********************************************955444.344444443 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0041
       Atg14  61 kiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...k 113
                 +++ +   ++ lk+++ +l + ++  +++ls l ++ ++++++la+l++  +   k
  CDO69419.1 597 DEELEEVTVDILKAKKVELAQAIKDDRTCLSDLSRQCKQASAELAALKKHQSeaqK 652
                 556666778999**********************************9998875531 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.5    0.0066       5.9      19      65 ..     423     469 ..     417     470 .. 0.92
   2 ?    3.9   0.3     0.083        75      35      63 ..     627     655 ..     604     659 .. 0.75
   3 ?   -2.0   0.1       5.6   5.1e+03      45      63 ..     978    1005 ..     944    1009 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
        ZapB  19 titlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkL 65 
                 +i++L+ e ++ k++++e ++  r +++ ++q +++  + ++++k+L
  CDO69419.1 423 EIARLKTETKDWKKRKSEAEDARRDVKARLKQSRATLREYRDHMKAL 469
                 689999999999999999999999999*****************987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.083
        ZapB  35 eelkeenreleeeneqlkeereawqerlk 63 
                 + l+++ ++ ++e+ +lk+ +++ q++++
  CDO69419.1 627 SDLSRQCKQASAELAALKKHQSEAQKKMN 655
                 55677777777************999987 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.6
        ZapB   45 e.........eeneqlkeereawqerlk 63  
                               e+  ++++ + +rlk
  CDO69419.1  978 AkaaldamldVAREKIDDDQKRISRRLK 1005
                  0333333334455566688888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1563  (0.0871772); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 7107.37
//
Query:       CDO69420.1  [L=209]
Description: hypothetical protein BN946_scf184791.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-12   47.4   0.0    1.7e-12   47.2   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   9.3e-17   1.7e-12     216     362 ..      53     200 ..      28     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 9.3e-17
                    EEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEE CS
  Aminotran_1_2 216 vgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmfll 309
                    vgs +K f+++G+RvG+++g +a+++ +   s+++ s   +++ + +  al+ a ++ +++e+  +++++rr +l+d++++lg ++   ++ +f+l
     CDO69420.1  53 VGSAGKLFSATGWRVGWLIGPPALIDPALATSTRIVScaNTPMREWAPVALEQARER-RFFETQLEEYAERRAVLVDAFEKLGMEYAWTEGSYFVL 147
                    89***********************************99999999999999999976.5************************9999999888877 PP

                    EEETHHCHHHHHHHHHHTCTEEEEEGGGGTS.......TTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 310 tdlsaetakelskkLleevgvyvtpgtsftv.......pgrlRitvAglteeeleelvea 362
                        a+        ++++ gv ++p++ f++        + + +++ + + ++++ ++e+
     CDO69420.1 148 LMSVAA------WFIANHIGVSCIPVSKFYCdehmhigANYVNFSF-CKDVDMYRTAAER 200
                    444444......569999*************777666666666666.6666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1529.75
//
Query:       CDO69421.1  [L=153]
Description: hypothetical protein BN946_scf184791.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.021   14.9   0.0      0.033   14.2   0.0    1.3  1  CARD           Caspase recruitment domain
       0.08   12.5   0.0       0.12   11.9   0.0    1.3  1  Fzo_mitofusin  fzo-like conserved region


Domain annotation for each model (and alignments):
>> CARD  Caspase recruitment domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.6e-06     0.033       7      45 ..      40      79 ..      35      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.6e-06
                THHHHHHHSSHHHHHHHHHHHTTSS-HHHHHHHHT.SSSH CS
        CARD  7 nrkrLverlkslsglldyLlekkVLteeeeekika.kttr 45
                + krL+e+l+ ++g l++++e++VL e+++++++  +t  
  CDO69421.1 40 KLKRLCETLGQTQGFLEDCVEEGVLRENHIQAFQRrLTIL 79
                6789***************************999854444 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.4e-05      0.12     100     154 ..      38      92 ..      20      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.4e-05
  Fzo_mitofusin 100 sstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLek 154
                    ss ++rlc++  +t+  le+ ++e   + +++++ q+++ +lrn+++++++++++
     CDO69421.1  38 SSKLKRLCETLGQTQGFLEDCVEEGVLRENHIQAFQRRLTILRNRTNEVSARVHA 92 
                    57899******************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1131.41
//
Query:       CDO69422.1  [L=379]
Description: hypothetical protein BN946_scf184791.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2837.41
//
Query:       CDO69423.1  [L=252]
Description: hypothetical protein BN946_scf184791.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-16   60.6   0.0    1.4e-14   54.1   0.0    2.2  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0   0.00051       9.1      99     137 ..       2      51 ..       1      54 [. 0.93
   2 !   54.1   0.0   7.7e-19   1.4e-14     168     316 ..      52     206 ..      49     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00051
                    EESS-THHHHHHHHTTSEEEEEEBEET...........TTTEE-HHHHHH CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyse...........edfhldlealee 137
                    ++p+++ y +++  +gg+ v+++l+++            ++++d+++l +
     CDO69423.1   2 FEPFFDLYLPAIAFNGGKPVYVSLHPStetipartvgkRSWTIDFDELSQ 51 
                    789***********************9**********99*******9976 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 7.7e-19
                    HHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.......EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SH CS
  Aminotran_1_2 168 eeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.......llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ss 254
                     +le +++l++ + +++++De+  +   +   + a r+++ + ++        +  ++ sK f ++G+RvG+++g +a+++ +  +s+++ +   +
     CDO69423.1  52 TKLEGIAQLVRDHDVMVISDEVVRTRPIN--LFHA-RPGARRLDHvrfatllGMWERTISKLFVATGWRVGWLIGPPALIDPALAVSTRIVFcaNT 144
                    678999999************98777776..3434.44444444444444445889************************************99** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH...C CS
  Aminotran_1_2 255 llqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae...t 316
                    ++q+a+aaal+ a           +++++rr +l+d++++lg ++   ++ +f+l  +s     +
     CDO69423.1 145 PMQEAAAAALEQARX---XXXXXXEEYAERRAVLVDAFEKLGMEYAWTEGSYFVLLNISGVrwpE 206
                    ************997...79***********************************9999875551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1817.81
//
Query:       CDO69424.1  [L=285]
Description: hypothetical protein BN946_scf184791.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-12   45.1   0.0    2.2e-10   40.3   0.0    2.5  2  Pkinase      Protein kinase domain
    6.2e-06   25.7   0.1    3.4e-05   23.3   0.1    2.1  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.041   13.8   0.9       0.15   11.9   0.1    2.1  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   3.7e-14   2.2e-10      18     184 ..       3     194 ..       1     205 [. 0.79
   2 ?    2.1   0.0     0.017     1e+02     237     260 ..     211     234 ..     197     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 3.7e-14
                 EEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE...SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHH CS
     Pkinase  18 aveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee...kdelylvleyveggeladllerkgslseeeakkiakqilegl 111
                 av+ +++  vA+K++k ++++ +         ++l +l+  +++ v +++v+e+   +++ ++v++y++        ++   +   ++ +++kq+legl
  CDO69424.1   3 AVRISDRSLVAIKVVKSREQELQIA-------QFLSSLQhtSNHCVPVLDVLEDpldTSQSLVVMQYLRPW------NDPEFVMVGDVVDFVKQMLEGL 88 
                 677889999******9998887554.......666666644567899999999877677778899999843......3344677899************ PP

                 HHHHHTTEE-SS-SGGGEEEET.............................TTEEE..E-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB.SHH CS
     Pkinase 112 eylHskgiiHrDlKpeNiLide.............................kgelK..itDFGlakelesssk.ltsfvgtseYlAPEvlkeney.skk 177
                 ++lH+ ++ HrD+ p N+++d                              +  +K   +DFGl+ ++  +++ l    + ++   PE+ ++ +y   k
  CDO69424.1  89 AFLHNYRVAHRDIAPPNVMMDGrvlyphghhpvwrnrspdaiedlvplariDHPVKyfFVDFGLSVRFAPGQSpLVLGDVGRDADVPELSSTVPYdAFK 187
                 *********************559999999999999888888888777766444553378999999999988664445555666679999999997889 PP

                 HHHHHHH CS
     Pkinase 178 vDvWslG 184
                 +D+++lG
  CDO69424.1 188 ADIYALG 194
                 9999998 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.017
                 HHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 237 akdllkkllkkdpkkRltaeellq 260
                 +  l++++ +++p  R+ta+el++
  CDO69424.1 211 LGTLIESMKQRQPALRPTATELVE 234
                 5679****************9986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   5.7e-09   3.4e-05      29     137 ..      10     109 ..       4     114 .. 0.74
   2 ?   -3.2   0.0      0.66     4e+03     235     257 ..     212     234 ..     201     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.7e-09
                  EEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEE CS
  Pkinase_Tyr  29 vkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvH 126
                    Va+K++k++ +e + +++l+ ++  ++ +   ++ +l   +++++ l+v++y++  +        + e + + d+++f+ q+ +G+++L++ ++ H
   CDO69424.1  10 SLVAIKVVKSREQELQIAQFLSSLQHTSN-HCVPVLDVLEDPLDTSQSLVVMQYLRPWN--------DPEFVMVGDVVDFVKQMLEGLAFLHNYRVAH 98 
                  56899999888888877777777665443.23334444544557777888888776543........34566778*********************** PP

                  ST-SGGGEEEE CS
  Pkinase_Tyr 127 rdlaarNvLls 137
                  rd+a  Nv+++
   CDO69424.1  99 RDIAPPNVMMD 109
                  ********987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.66
                  HHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 235 yelmkkcweedpeeRptfselve 257
                   +l+++  +++p+ Rpt +elve
   CDO69424.1 212 GTLIESMKQRQPALRPTATELVE 234
                  56777777889999999998876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.013        75      24      59 ..      13      48 ..       4      65 .. 0.73
   2 ?   11.9   0.1   2.6e-05      0.15      95     185 ..      23     110 ..      17     119 .. 0.73
   3 ?   -3.0   0.0      0.91   5.5e+03     135     160 ..     219     243 ..     200     255 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.013
                EEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CT CS
         APH 24 vlrrnpparaaeeirrevallrlLakagvpvPevla 59
                + +++  ++ + +i++++ +l++ +++ vpv  vl 
  CDO69424.1 13 AIKVVKSREQELQIAQFLSSLQHTSNHCVPVLDVLE 48
                567777778899********************9997 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC...HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TT CS
         APH  95 lealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld...lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddg 185
                   ++++fl  l+ ++    p+ d l++ l+  + l+    ++l++ +++    + ++ + v ++l+ l+      ++ H+D+ p+N+++d   g
  CDO69424.1  23 ELQIAQFLSSLQHTSNHCVPVLDVLEDPLDTSQSLVVM--QYLRPWNDPefvMVGDVVDFVKQMLEGLAF-LHNYRVAHRDIAPPNVMMD---G 110
                 55789999999999988999999999999988888776..444444444244366666645555555555.79****************9...3 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.91
                 CCCGCCTCCHHHHHHHHHHHHHHHH- CS
         APH 135 rllaselldlleeleeqvlaalaall 160
                  +++++l++ + el e ++++++++l
  CDO69424.1 219 KQRQPALRPTATELVE-LYEKMRKTL 243
                 2333333333444444.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1994.37
//
Query:       CDO69425.1  [L=198]
Description: hypothetical protein BN946_scf184791.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0006   19.6   0.2     0.0015   18.3   0.2    1.6  1  DUF3410    Domain of unknown function (DUF3410)
  ------ inclusion threshold ------
      0.061   14.4   3.2      0.098   13.7   3.2    1.4  1  Pheromone  Fungal mating-type pheromone
      0.066   12.7   0.2       0.16   11.4   0.1    1.6  2  DUF4349    Domain of unknown function (DUF4349)
       0.13   12.4   2.6       0.48   10.5   0.4    2.2  2  TssO       Type VI secretion system, TssO


Domain annotation for each model (and alignments):
>> DUF3410  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   3.3e-07    0.0015      23      56 ..      91     124 ..      81     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.3e-07
                 HHHHHH--CHHHHHHHHHCTTCCCHHHHHHHT-- CS
     DUF3410  23 klvrlvYDvrrDdalfRrelekakgFdalRknYp 56 
                  +++++Y + +D + +R+ + ++ +++++R  Y+
  CDO69425.1  91 GVTKQCYKLTDDVESLRNDMGRTSSYERMRSSYK 124
                 6789****************************96 PP

>> Pheromone  Fungal mating-type pheromone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.2   2.2e-05     0.098      12      66 ..     141     198 .]     114     198 .] 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
   Pheromone  12 sssssaessesalfasssspspspalsssasasddevlavpvDaErrggg...tatgf 66 
                 ++s+s  ss+++++a+s  +sp++++ss ++ s++++  +p+ ++rr++    t+++f
  CDO69425.1 141 DTSMSTMSSAAPSAATSPTRSPVSSPSSPPPFSVANSSILPTHYDRRFTTpvkTTHAF 198
                 5789999*****************************************9888777776 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.6e-05      0.16      56     111 ..      20      76 ..      18      78 .. 0.93
   2 ?   -2.6   0.0      0.67     3e+03     137     152 ..     133     148 ..     132     166 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
     DUF4349  56 vPaarldafldelaelgkvtsrstsaeDVTeqyv.DleaRlkaleasedrllallek 111
                 +P+ +l  ++ +l+e+++   +++++   T qy+ D + Rl  l+a+ d l++++++
  CDO69425.1  20 LPSHKLHVLVRNLQEAQTFFASQVEQGIFTGQYAeDYRKRLNELQAQTDALRKIMQR 76 
                 69999999999999999999999999999***987********************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.67
     DUF4349 137 gqlryLdnqvaystvt 152
                 +ql  ++  +++st +
  CDO69425.1 133 AQLDGYATDTSMSTMS 148
                 5777777778888754 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00011      0.48      18      59 ..       3      44 ..       1      49 [. 0.91
   2 ?    1.9   0.1     0.047   2.1e+02      87     108 ..      99     120 ..      53     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
        TssO 18 lvtvlllflivffffkssplqekeillkelerkkkfeekqke 59
                ++t +ll +++f f +++p  +  +l+ +l++ ++f+ +q e
  CDO69425.1  3 FFTYTLLAFVLFVFLRQLPSHKLHVLVRNLQEAQTFFASQVE 44
                678888888****************************99976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.047
        TssO  87 IkkdlndikntygknssdeRyk 108
                 +++d+++++n++g++ss eR +
  CDO69425.1  99 LTDDVESLRNDMGRTSSYERMR 120
                 4567788888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      792  (0.0441742); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1437.46
//
Query:       CDO69426.1  [L=283]
Description: hypothetical protein BN946_scf184791.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-13   48.4   0.1    9.1e-10   38.3   0.0    2.7  2  Pkinase         Protein kinase domain
    1.7e-06   27.6   0.0    1.5e-05   24.4   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.057   13.4   1.5       0.46   10.5   0.6    2.5  2  DUF3425         Domain of unknown function (DUF3425)
      0.085   12.6   0.1       0.15   11.7   0.1    1.3  1  CPDase          Cyclic phosphodiesterase-like protein
        0.1   11.4   0.0       0.13   11.0   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.14   12.2   0.1       0.25   11.4   0.1    1.4  1  DUF2187         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     3e-13   9.1e-10      94     191 ..      71     201 ..       2     208 .. 0.75
   2 !    7.4   0.1   0.00082       2.4     236     261 ..     210     235 ..     199     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3e-13
                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET...............................TTEEEE-SGTTSEESSSSCSBCTTTSC. CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLide...............................kgelKitDFGlakelessskltsfvgt. 160
                   +  ++ +++ q+legl ++H++++ HrD+  +Ni++d                                +     +DFGl++ ++++s+ t+++g+ 
  CDO69426.1  71 FATVGDVVEFVDQTLEGLVFMHQNNVAHRDVAAANIMMDAkplypnghhpirlgytpdsmypvsplpragrDIRYFYIDFGLSSWFSKGSS-TNVIGDv 168
                 455678999******************************559**********99999999999888886433335679**********995.5555542 PP

                 .GGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHH CS
     Pkinase 161 .seYlAPEvlkeney.skkvDvWslGvilyell 191
                  ++   PE+ ++ +y   kvD+++lG + ++ +
  CDO69426.1 169 gRDVEVPELSDKVPYdAFKVDIFALGNVYFKEF 201
                 278899*********899********8877654 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00082
                 HHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 236 eakdllkkllkkdpkkRltaeellqh 261
                  + +l++++ ++ p++R+tae++lq+
  CDO69426.1 210 FLVSLIERMKRERPEQRPTAEQALQE 235
                 5679*******************984 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.1e-09   1.5e-05      91     139 ..      62     111 ..       4     115 .. 0.69
   2 ?    0.4   0.0      0.11   3.3e+02     229     254 ..     206     231 ..     171     236 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.1e-09
                  HHHHT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  91 fLrkk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                  +Lr   + e  t+ d+++f+ q  +G+ +++++++ Hrd+aa N++++ +
   CDO69426.1  62 YLRPCnNPEFATVGDVVEFVDQTLEGLVFMHQNNVAHRDVAAANIMMDAK 111
                  444433445568899*******************************9865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
                  TSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 229 kcpeelyelmkkcweedpeeRptfse 254
                  k ++ l +l+++  +e+pe+Rpt ++
   CDO69426.1 206 KNTDFLVSLIERMKRERPEQRPTAEQ 231
                  34566777777778888888888766 PP

>> DUF3425  Domain of unknown function (DUF3425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   3.1e+02      32      46 ..      50      64 ..      17     210 .. 0.57
   2 ?   10.5   0.6   0.00015      0.46      20      67 ..     223     267 ..     215     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
     DUF3425 32 aHpveidvlpwpelR 46
                ++ ++++++++p lR
  CDO69426.1 50 PYDPQLALMVMPYLR 64
                455555555555555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00015
     DUF3425  20 enlrPtelQlriaHpveidvlpwpelRdrllrafqeeeidedeffrdv 67 
                 ++ rPt++Q   + +   + l  p+lR rl+ ++++     + +++d 
  CDO69426.1 223 PEQRPTAEQALQEWQKIRATLKDPQLRWRLVSQSEQ---PIERVVNDT 267
                 789****************************94444...444455555 PP

>> CPDase  Cyclic phosphodiesterase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     5e-05      0.15      77     128 ..     187     238 ..     168     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
      CPDase  77 kfegvsvgkkYfkkvvlevkkdkellslaqlireafveaedeasqraaewvk 128
                 k + ++ g+ Yfk  + + k++ +l sl + ++ + +e+ + a+q+ +ew k
  CDO69426.1 187 KVDIFALGNVYFKEFMKKYKNTDFLVSLIERMKRERPEQRPTAEQALQEWQK 238
                 55667889*****************************************976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.3e-05      0.13     301     341 ..      70     109 ..      57     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
  Pkinase_fungal 301 kaespkellealrDaIkghrsLflkagiLHrDiSenNilit 341
                     ++ ++ +++e + + ++g+  ++ + ++ HrD+++ Ni++ 
      CDO69426.1  70 EFATVGDVVEFVDQTLEGLVFMH-QNNVAHRDVAAANIMMD 109
                     56777888888889999999999.***************97 PP

>> DUF2187  Uncharacterized protein conserved in bacteria (DUF2187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.4e-05      0.25       3      28 ..      72      95 ..      70     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
     DUF2187  3 AkvGdiieFkkgdlkltGiVekvnen 28
                A+vGd++eF ++  +l+G V   ++n
  CDO69426.1 72 ATVGDVVEFVDQ--TLEGLVFMHQNN 95
                9********998..******877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1717.67
//
Query:       CDO69427.1  [L=98]
Description: hypothetical protein BN946_scf184791.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.4   0.2       0.21   11.6   0.2    1.4  1  Melittin  Melittin


Domain annotation for each model (and alignments):
>> Melittin  Melittin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.2e-05      0.21       9      20 ..      18      29 ..      11      32 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.2e-05
                HHTHHHHHHHHH CS
    Melittin  9 LttGLPALisWi 20
                L tGLPAL  W+
  CDO69427.1 18 LVTGLPALACWL 29
                78*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 673.62
//
Query:       CDO69428.1  [L=331]
Description: hypothetical protein BN946_scf184791.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.8   0.0      0.052   13.8   0.0    1.5  1  DUF3416   Domain of unknown function (DUF3416)


Domain annotation for each model (and alignments):
>> DUF3416  Domain of unknown function (DUF3416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-06     0.052      76     168 ..      85     177 ..      77     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-06
     DUF3416  76 elGryeftveAWvDpfatWrhdlekkveagqdveleleeGarlleraaeraeaaalraaaaal....rddpeerlaaalseevaallaryplrelat 168
                 +l    +++++W+D+++ W+++l+k+      +  el++ ++ +++  +++ +a+l +a +      ++++++  ++a+ + v+++la+ p   l +
  CDO69428.1  85 KLRAQGYAINSWKDEYHNWKNGLTKRAIV---LCHELNKIRATIAQSSSER-RAKLGKAGKVTefglSSPQRATQETAIIPSVEQALAQPPSSALSS 177
                 5555679*****************98655...4445555544444444333.244555444443344666888888999999999999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2545.87
//
Query:       CDO69429.1  [L=373]
Description: hypothetical protein BN946_scf184791.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-13   51.0   0.0    2.4e-12   46.8   0.0    2.5  2  Pkinase      Protein kinase domain
    8.9e-05   21.9   0.0    0.00017   21.0   0.0    1.7  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.7e-16   2.4e-12      15     189 ..      89     288 ..      87     298 .. 0.83
   2 ?    1.0   0.0     0.025   2.2e+02     239     260 ..     302     323 ..     288     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.7e-16
                 EEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE...SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHH CS
     Pkinase  15 VykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee...kdelylvleyveggeladllerkgslseeeakkiakqil 108
                 V+ a++ +++k vA+Kk+++++ +++        + +l +l    ++ vr+ e++ +   ++  ++v+ y++        ++    +  ++ ++a+q+l
  CDO69429.1  89 VIDAKRVADNKLVAIKKFRNDSHESRIA------L-YLSSLTdnQNHCVRIEEILPDpldPRLSLMVMPYLRPC------NDPDFSTVGDVIDFASQTL 174
                 788999999*********9999998665......3.33333336778899999999966455566888888844......3334567899********* PP

                 HHHHHHHHTTEE-SS-SGGGEEEET...............................TTE.EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLide...............................kge.lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeney 174
                 egl ++H++++ HrD+   Ni++d                                + +    +DFGl++++ ++ + +   ++ ++  APE+ ++ +y
  CDO69429.1 175 EGLVFMHRHRVAHRDIAMMNIMMDAsslypdghhpvrtgytadarypatalprgsrS-VtYVYIDFGLSSQFPEGVStYVVGCVGRDKEAPELSSTVPY 272
                 ************************669**********99999999999988866533.257789**********99989999***************** PP

                 .SHHHHHHHHHHHHHH CS
     Pkinase 175 .skkvDvWslGvilye 189
                    kvD+++lG + ++
  CDO69429.1 273 dPFKVDIFALGNLYFN 288
                 778********88776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.025
                 HHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 239 dllkkllkkdpkkRltaeellq 260
                  +++k+ ++ p++R++a++ll+
  CDO69429.1 302 PIVEKMRQQVPEDRPSAADLLH 323
                 57999**************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-08   0.00017      99     139 ..     160     200 ..      89     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-08
                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                    t+ d+++fa q  +G+ +++++++ Hrd+a  N++++ +
   CDO69429.1 160 FSTVGDVIDFASQTLEGLVFMHRHRVAHRDIAMMNIMMDAS 200
                  4567899******************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2811.63
//
Query:       CDO69430.1  [L=283]
Description: hypothetical protein BN946_scf184791.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-16   60.6   0.0    2.8e-14   53.1   0.0    2.3  2  Pkinase         Protein kinase domain
      1e-06   28.3   0.8      3e-06   26.7   0.3    2.0  2  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.018   13.8   0.0      0.024   13.4   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.14   12.0   0.0       0.38   10.6   0.0    1.7  2  DAHP_snth_FXD   DAHP synthase ferredoxin-like domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   6.2e-18   2.8e-14      18     186 ..       3     196 ..       1     206 [. 0.83
   2 !    5.5   0.0    0.0021       9.5     237     261 ..     211     235 ..     197     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 6.2e-18
                 EEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE...SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHH CS
     Pkinase  18 aveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee...kdelylvleyveggeladllerkgslseeeakkiakqilegl 111
                 a+++++++ vA+Kki+++  + +         ++l +++  h++ v +++++ +   +d  ++v+ y+++       ++ +  +  e+ ++++q+legl
  CDO69430.1   3 ARRSSNNELVAIKKIRRDTHEIQI-------AQYLSSIQhpHNHTVSILQILDDpvdPDLSLMVMPYLRQC------NKPSFGTIGETIDFINQTLEGL 88 
                 678899*********999776544.......3566666656677777777777766588888999999944......334456788999********** PP

                 HHHHHTTEE-SS-SGGGEEEE.T............................TTEEE..E-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB.SHH CS
     Pkinase 112 eylHskgiiHrDlKpeNiLid.e............................kgelK..itDFGlakelesssk.ltsfvgtseYlAPEvlkeney.skk 177
                 +++H++++ HrD+  eNi+++ +                            + ++K   +DFGla+++ ++ + +    + ++   PE+ ++ +y   k
  CDO69430.1  89 AFMHRHNVAHRDIAVENIMMNaQalypdghhpvrlnyapdgihpvtalprhDHQIKyyYIDFGLACHFPEGASrYVVGDVGRDTEVPELSSHVPYdAFK 187
                 *********************55*********************9999987555663369*********99977777777888999*********899* PP

                 HHHHHHHHH CS
     Pkinase 178 vDvWslGvi 186
                 vD+++lG +
  CDO69430.1 188 VDIFALGNL 196
                 *******66 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0021
                 HHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 237 akdllkkllkkdpkkRltaeellqh 261
                 ++ l++++ k++p++R++ eell++
  CDO69430.1 211 LLPLIERMTKRNPQERPSSEELLAQ 235
                 5679*****************9974 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.3   6.7e-10     3e-06      24     139 ..       5     111 ..       1     115 [. 0.72
   2 ?   -2.9   0.0      0.72   3.2e+03     237     256 ..     214     233 ..     203     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6.7e-10
                  TTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE...SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  24 kekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct...keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmey 118
                  ++++++ Va+K+++++++e + ++ l+ ++      h++ v++l +     + +  l+v+ y+++ +          +  t+ ++++f+ q  +G+++
   CDO69430.1   5 RSSNNELVAIKKIRRDTHEIQIAQYLSSIQH----PHNHTVSILQILDdpvDPDLSLMVMPYLRQCNK--------PSFGTIGETIDFINQTLEGLAF 90 
                  5677888999999888888765555555443....455566666665532255557778777655432........34457889************** PP

                  HHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr 119 LeskklvHrdlaarNvLlsen 139
                  ++++++ Hrd+a  N++++ +
   CDO69430.1  91 MHRHNVAHRDIAVENIMMNAQ 111
                  *****************9876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.72
                  HHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 237 lmkkcweedpeeRptfselv 256
                  l+++  +++p+eRp+ +el+
   CDO69430.1 214 LIERMTKRNPQERPSSEELL 233
                  67778889999999988876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.4e-06     0.024     303     343 ..      72     111 ..      67     167 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.4e-06
  Pkinase_fungal 303 espkellealrDaIkghrsLflkagiLHrDiSenNilitds 343
                     ++  e +  + + ++g+  ++   ++ HrDi+++Ni+++ +
      CDO69430.1  72 GTIGETIDFINQTLEGLAFMH-RHNVAHRDIAVENIMMNAQ 111
                     566677777888888999999.99**************933 PP

>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.1   9.4e+03      40      54 ..      72      86 ..      71      90 .. 0.71
   2 ?   10.6   0.0   8.5e-05      0.38      23      48 ..     149     174 ..     140     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
  DAHP_snth_FXD 40 GviGdtskldkeqle 54
                   G iG+t + + + le
     CDO69430.1 72 GTIGETIDFINQTLE 86
                   788888877777766 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.5e-05
  DAHP_snth_FXD  23 elGlkvhvskGeertViGviGdtskl 48 
                    ++Gl +h  +G++r V+G +G ++++
     CDO69430.1 149 DFGLACHFPEGASRYVVGDVGRDTEV 174
                    68*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2021.38
//
Query:       CDO69431.1  [L=560]
Description: hypothetical protein BN946_scf184791.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-16   59.6  19.0    0.00045   21.0   0.0    6.7  6  WD40         WD domain, G-beta repeat
    4.6e-14   52.5   1.5     0.0022   18.2   0.1    4.2  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0013   18.7   0.1      0.041   13.8   0.0    2.3  2  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
        6.1    6.0   9.3         10    5.3   9.3    1.3  1  ORC6         Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.3     0.018        82       9      38 .]     259     288 ..     237     288 .. 0.83
   2 !    8.7   0.1   0.00074       3.3       2      35 ..     293     326 ..     292     328 .. 0.79
   3 !   17.4   0.1   1.3e-06    0.0059       8      38 .]     342     377 ..     335     377 .. 0.76
   4 !   15.9   0.5   3.9e-06     0.018       3      38 .]     409     448 ..     401     448 .. 0.78
   5 ?    0.5   0.3       0.3   1.3e+03       4      38 .]     468     495 ..     456     495 .. 0.59
   6 !   21.0   0.0     1e-07   0.00045       4      38 .]     502     537 ..     499     537 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
                 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvriWd 38 
                 +H+ ++s+++ + g+ la G+  g ++i+d
  CDO69431.1 259 AHDTISSVSWVQKGTSLAIGTLSGRLYIYD 288
                 6766999999999999**9*9999999998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00074
                 EEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   2 qclrtlt.GH.ssvtslafspdgawlasGsdDgtvr 35 
                 q++rt++ +H + + +l  s +++ l+sGs+D+ ++
  CDO69431.1 293 QLTRTYErAHsQRIGAL--SWNSHILSSGSRDRQIH 326
                 678899559*666****..55777799******986 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.3e-06
                 ESS.SSEEEEEEETTSSE..........EEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw..........lasGsdDgtvriWd 38 
                  GH + v++l+      w          lasG+ D++v iWd
  CDO69431.1 342 QGHrQEVCGLR------WsgdggpqaatLASGGNDNKVCIWD 377
                 69*999****6......44444447777*************9 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 3.9e-06
                 EEEEEESS.SSEEEEEEETTSSE.EEEEE..TTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.lasGs..dDgtvriWd 38 
                 +l+++  H   v +la++p+ +  la+G+   D+++r+W+
  CDO69431.1 409 PLWKFHEHtAAVKALAWDPHVSGiLATGGgtADKHIRFWN 448
                 67788899666999977777777456875347*******8 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.3
                 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHssvtslafspdgawlasGsdDgtvriWd 38 
                 +++lt H  + s       + ++s++  + + iW+
  CDO69431.1 468 TWSLTSH-EIVST------HGFSSSTAQNQICIWK 495
                 4445555.32222......1145566799999995 PP

  == domain 6  score: 21.0 bits;  conditional E-value: 1e-07
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 + +l+GH++ v  la spdg  +++G  D t+r+W+
  CDO69431.1 502 VASLSGHTHrVLYLAMSPDGETIVTGAGDETLRFWN 537
                 6789***667****************66*******8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   4.9e-07    0.0022      35      91 ..     257     313 ..     241     314 .. 0.90
   2 !    6.1   0.0    0.0031        14      34      67 ..     341     378 ..     319     384 .. 0.82
   3 !   17.7   0.1     7e-07    0.0032      30      90 ..     411     470 ..     408     472 .. 0.86
   4 !    6.2   0.0    0.0028        13      26      77 ..     499     548 ..     483     555 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.9e-07
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                   +   +++s++W ++g+ La+++  g++ ++d ++ ++ ++++ ++++++  l+W++
   CDO69431.1 257 GNAHDTISSVSWVQKGTSLAIGTLSGRLYIYDGSTLQLTRTYERAHSQRIGALSWNS 313
                  567789***************************************999*******86 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0031
  ANAPC4_WD40  34 edkedsevrsLaWkpdg....klLavaysdgevrllda 67 
                  ++++ +ev +L+W+ dg      La + +d++v + d 
   CDO69431.1 341 SQGHRQEVCGLRWSGDGgpqaATLASGGNDNKVCIWDL 378
                  578899********9995555689********999886 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 7e-07
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpd.gklLav..aysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  w++  +++   v++LaW p    +La   +++d ++r+ ++++g+++++l+++s+  v+ l+W+
   CDO69431.1 411 WKF--HEHTAAVKALAWDPHvSGILATggGTADKHIRFWNVQNGTMLSELDTGSQ--VCNLTWS 470
                  777..78999********9834588873358999*******************99..******7 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0028
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                    +v +l  +++ ++v  La +pdg+ ++ +  d ++r+ +a  +k  h+ +
   CDO69431.1 499 LDMVASL--SGHTHRVLYLAMSPDGETIVTGAGDETLRFWNAFPKKENHEAR 548
                  4556666..788999************************9998888777665 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.028   1.3e+02      92     146 ..     250     303 ..     225     319 .. 0.67
   2 !   13.8   0.0   9.1e-06     0.041      59     168 ..     417     534 ..     403     540 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.028
                 CEEEEEEEEES..--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT- CS
       eIF2A  92 vkviskleeqk..rNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaana 146
                 v+++++l++++    ++ + +kg+ +++   g l+G+l i+d ++++   ++e a++
  CDO69431.1 250 VSKLCDLGNAHdtISSVSWVQKGTSLAI---GTLSGRLYIYDGSTLQLTRTYERAHS 303
                 5555555544311345677777777665...45778888888887777777776655 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.1e-06
                 SS.EEEEEE-TTSS-EEEEES.SSSCEEEEEECS.CEEEEEEEEES-.-EEEE-TTSS.EEEEE-TTSSS..-EEEEEETTTTEEEEEEE..-TT--EE CS
       eIF2A  59 egpihdvaWspkskefaviyG.kmpakvslfdlk.vkviskleeqkr.Ntiffspkgk.lvllaGfgnla..Geleiwdvkkkkkiakae..aanatlv 149
                 +  ++++aW+p+ + ++   G  +++++ +++++ + ++s+l++ ++   + +s + + +v + Gf +     ++ iw+  +++ +a++        ++
  CDO69431.1 417 TAAVKALAWDPHVSGILATGGgTADKHIRFWNVQnGTMLSELDTGSQvCNLTWSLTSHeIVSTHGFSSSTaqNQICIWKYPSLDMVASLSghTHRVLYL 515
                 456899999999999888876578889999999558888888775431557787665416667799875422778889999888888765214455678 PP

                 EE-TTSSEEEEEE-TTT-S CS
       eIF2A 150 ewspdgryvlTattaprlr 168
                   spdg+ ++T      lr
  CDO69431.1 516 AMSPDGETIVTGAGDETLR 534
                 8999999999976655555 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.3    0.0023        10      61     139 ..      93     171 ..      91     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0023
        ORC6  61 pysvkkiPlppkaykklldlfrqsLsnsssatstPskspsspstdpkslrkqlfsTPtKsktlktalsa.sksssplkrr 139
                 p + ++iP++++a k   +   +s++++  ++s+P ++p sp++ p+  ++ l +TPt ++  + +++  s+  +p++r+
  CDO69431.1  93 PSKSRMIPTESDALKEQANAIFNSILTTEVTPSSP-QRPGSPVRAPAASTSTLPTTPTRRRLFAFNSPSrSNPATPSRRL 171
                 45789*********999988777777777455555.8999999****************996655543344444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4331.88
//
Query:       CDO69432.1  [L=823]
Description: hypothetical protein BN946_scf184791.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-23   82.7   0.5    3.8e-23   81.4   0.4    1.8  1  Bromodomain  Bromodomain
    4.3e-06   26.6   0.0      8e-06   25.8   0.0    1.4  1  Bromo_TP     Bromodomain associated


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.4   4.3e-27   3.8e-23       8      83 ..      61     137 ..      50     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 4.3e-27
                  BHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSH.TTSHHHHHHH CS
  Bromodomain   8 llehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyng.egsviyelae 83 
                   +++ +ae+Fl+pv+++e+pdyy++i++P+dL+t+ +k+++++Yks ++f++dl l++sN+ +yn  e++++ ++a+
   CDO69432.1  61 TMDNRDAEAFLKPVSKTEVPDYYDIISNPMDLQTMLRKVKQRQYKSKKEFKDDLDLIWSNCFTYNAtEDHPLRQCAT 137
                  58999*************************************************************99999999987 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   8.9e-10     8e-06       8      73 ..     448     513 ..     442     518 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 8.9e-10
                 HHHHHHHHHHHHT-SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHTT- CS
    Bromo_TP   8 lkvvvsqileeaGfdsaeesaLEtLteiaqkYirelgeqaksfaehagRseptlkDvvltLqelgi 73 
                 l  + s++le+aGf  + + aL+ Lt ++++Y+ ++g+++   ++ +g      +++  tL e gi
  CDO69432.1 448 LHWMGSKVLEHAGFQGSSKMALDVLTSVTAEYLYNVGRTIRFLCDKYGNKMTAEQIILHTLFESGI 513
                 5556699********************************666669999888888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5614.14
//
Query:       CDO69433.1  [L=428]
Description: hypothetical protein BN946_scf184791.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2691.30
//
Query:       CDO69434.1  [L=306]
Description: hypothetical protein BN946_scf184791.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-29  101.8  12.3    5.6e-29  101.2  12.3    1.4  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2  12.3   3.1e-33   5.6e-29       9     233 ..      47     266 ..      37     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 3.1e-33
        UbiA   9 lalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllalllyvvYt 107
                 la+a+ +  d++ +  +++ +++  +   + N+ +D ++Da+  ++ +RPl++ ris ++a+++ ++l+ +  ll+  l++p+t++ +++ ++l ++Y 
  CDO69434.1  47 LAFASAPLRDASRISHVVFWVWFHVLQFDVSNQTLDPDEDAK--NKSDRPLPAKRISLRNAILLRWLLVPACWLLS-SLYSPQTVYASIALVALTIIYD 142
                 6677777788888999999999999999**************..********************************.********************** PP

        UbiA 108 ..glrlKrrtllgtvvggiafglppllgwaavtgsl...sllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllavlll 201
                   g   +r+++++++v ++ f+ + +++  +++++    +  all  +a    ++++++++d++d+egD ++g++t+p+v+G+ a +   +++ + l+ 
  CDO69434.1 143 elG-AHGRHWIIRNLVNALGFASFEVGATLVAGNDPgrlDSVALLSVIASTGIFATTIHTQDFKDIEGDSAIGRQTIPIVFGKFAKYT--VIIPMTLWS 238
                 555.******************************99**97777777777777777777778*********************888887..544444444 PP

        UbiA 202 allllllalllllylllalllaalallraarl 233
                     ++l +++ l +l++l++++l+l++ ++ 
  CDO69434.1 239 ----IGLSYMWHLDALASLAFVLLGLFVGVKY 266
                 ....3445555555555555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2097.43
//
Query:       CDO69435.1  [L=321]
Description: hypothetical protein BN946_scf184791.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2455.76
//
Query:       CDO69436.1  [L=306]
Description: hypothetical protein BN946_scf184791.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-28   98.8  14.6    4.3e-28   98.3  14.6    1.3  1  UbiA             UbiA prenyltransferase family
  ------ inclusion threshold ------
        2.4    7.8   5.5       0.49   10.0   0.8    2.3  3  RhodobacterPufX  Intrinsic membrane protein PufX


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3  14.6   4.8e-32   4.3e-28       9     234 ..      47     268 ..      39     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 4.8e-32
        UbiA   9 lalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllalllyvvYt 107
                 la+a+ +  d++ +  +++ +++  +   + N+ +D ++Da+  ++ +RPl++ ris ++a+++ ++l+ +  l++  l++p+t++ +++ ++l ++Y 
  CDO69436.1  47 LAFASAPLRDASRIPHVVFWVWFHVLQFDVSNQTLDPDEDAK--NKSDRPLPAKRISLRNAILLRWLLVPACWLFS-SLYSPQTVYASIALVALTIIYD 142
                 55555666666667777777888889999*************..********************************.********************** PP

        UbiA 108 ..glrlKrrtllgtvvggiafglppllgwaavtgsl...sllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllavlll 201
                   g   +r+++++++v ++ f+ + +++  +++g+    +  all  la    ++++++++d++d+egD ++g++t+p+v+G+ a +   +++ + l+ 
  CDO69436.1 143 elG-AHGRHWIIRNLVNALGFASFEVGATLVAGGNPrrlDSVALLSVLASTGIFATTIHTQDFKDIEGDSAIGRPTIPIVFGKFAKYT--VIIPMTLWS 238
                 555.******************************99***6666666666666666777777*********************888887..433443333 PP

        UbiA 202 allllllalllllylllalllaalallraarlv 234
                 +   l ++++l  ++ +a++l++l + + ++lv
  CDO69436.1 239 L--GLSYMWHLDALASVAFVLLGLSVGV-MYLV 268
                 3..3344444444444444444443333.2233 PP

>> RhodobacterPufX  Intrinsic membrane protein PufX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.62   5.6e+03      34      46 ..      63      75 ..      62      85 .. 0.65
   2 ?   10.0   0.8   5.5e-05      0.49      29      54 ..     249     274 ..     231     277 .. 0.86
   3 ?   -2.6   0.1      0.47   4.2e+03      25      33 ..     298     306 .]     295     306 .] 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.62
  RhodobacterPufX 34 fvlvllfllvala 46
                     +v+ ++f +  + 
       CDO69436.1 63 VVFWVWFHVLQFD 75
                     5677777766654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 5.5e-05
  RhodobacterPufX  29 gyAavfvlvllfllvalaliGrlLPe 54 
                       +A+v ++ l + +++++l+Gr  Pe
       CDO69436.1 249 ALASVAFVLLGLSVGVMYLVGRTVPE 274
                      58999999999**************9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.47
  RhodobacterPufX  25 lkGAgyAav 33 
                      ++G  yAa+
       CDO69436.1 298 VWGSKYAAI 306
                      89*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 2010.76
//
Query:       CDO69437.1  [L=433]
Description: hypothetical protein BN946_scf184791.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2965.60
//
Query:       CDO69438.1  [L=322]
Description: hypothetical protein BN946_scf184791.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-09   36.0   0.0    1.5e-08   35.3   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    9.5e-09   35.9   0.0    1.8e-08   35.0   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    2.3e-07   31.4   0.0    4.1e-07   30.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.5e-06   27.4   0.0    4.7e-06   26.5   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    0.00012   21.9   0.0     0.0003   20.6   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.22   11.6   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   4.9e-12   1.5e-08       1      99 []      59     158 ..      59     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 4.9e-12
  Methyltransf_12   1 LeiGcGtGsllrallekl...pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldni 89 
                      L++G+Gt + +r +++     ++++++++Di++++++d++e  ++ +  + + v+    +  +l+g  +fDl+ +s+++ +l  + ++++++++
       CDO69438.1  59 LDVGAGTCAWIRDFAAMEqipKGVHLYACDIDTKFFPDRSETDKFGITTFKQDVTTPFPE--NLHG--KFDLIRISFLFMCLteDGWNKAIQHC 148
                      8*************999999****************999999998887665555444333..4444..9**************99999****** PP

  Methyltransf_12  90 rklLkpgGrl 99 
                      +++Lkp+++l
       CDO69438.1 149 KQVLKPEAIL 158
                      ******9875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.9e-12   1.8e-08       1      95 [.      58     154 ..      58     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 5.9e-12
                      EEEET-TTSHHHHHHHCTS...TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSS.STTTEEEEEEESTGGGSSHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl...gkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpf.edgsfDlvvssgalhhlsdedlekalkei 89 
                      vLd+G+Gt  +++++a+     +  +++++Di+ ++     e     ++ ++  ++d+++ +p+  +g+fDl+ +s+ +++l+++ + ka++++
       CDO69438.1  58 VLDVGAGTCAWIRDFAAMEqipKGVHLYACDIDTKFFPDRSETD---KFGITTFKQDVTTpFPEnLHGKFDLIRISFLFMCLTEDGWNKAIQHC 148
                      9*************99885555369*********9987655444...689*******97757753677**********9999************ PP

                      HHHEEE CS
  Methyltransf_25  90 arvLkp 95 
                      ++vLkp
       CDO69438.1 149 KQVLKP 154
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.4e-10   4.1e-07       1      96 []      59     160 ..      59     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.4e-10
                      EEET-TTSHHHHHHH.....HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT...-EEEEEEES-CCC-..CCHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala.....krgarvvgvDlskemlklakekaseeglkvefvvadaeklpfedn...sfDlvvssevlhhv..edpekalkei 84 
                      LdvG+Gt +  +++a      +g +++++D+++++     ++++++++ ++  ++d+++ pf++n   +fDl+ +s+ ++ +  + ++ka++ +
       CDO69438.1  59 LDVGAGTCAWIRDFAameqiPKGVHLYACDIDTKFF---PDRSETDKFGITTFKQDVTT-PFPENlhgKFDLIRISFLFMCLteDGWNKAIQHC 148
                      8**************88555555************9...66666776668899*****6.****8888**************9999******** PP

                      HHHEEEEEEEEE CS
  Methyltransf_11  85 aRvLkpgGllvi 96 
                      ++vLkp+ +l+i
       CDO69438.1 149 KQVLKPEAILLI 160
                      *******99875 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.6e-09   4.7e-06      24     164 ..      56     231 ..      32     232 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.6e-09
  Methyltransf_23  24 grvLdiGcGtGillevlre.....ngfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrev.lehvpd.ppell 102
                      + vLd+G+Gt  + + +++     +g+++++ D++ +  + ++        ++k+ + ++f     ++  gkfdlI  +++ ++  +d + +++
       CDO69438.1  56 SHVLDVGAGTCAWIRDFAAmeqipKGVHLYACDIDTKFFPDRSetdkfgitTFKQDVTTPF----PENLHGKFDLIRISFLfMCLTEDgWNKAI 145
                      479**********998855444444667777777644333333666665556666666666....888999*****7666516777789***** PP

  Methyltransf_23 103 rqiatllkpgGylllseplasl........................kedrllldwlyl.vpagrhisffsarslkelleeaGlevve 164
                      ++ ++ lkp++ ll+ e +  l                         ++ ++  + +   ++++ +   +  +l ++l+eaG+evv 
       CDO69438.1 146 QHCKQVLKPEAILLIDEADPILypslselppedatshdfekhlnrpDWLGKANRIYAGfSKESGFVPNLT-FTLPTILREAGFEVVD 231
                      *****************76544677788899998888777666655455555556444144557778888.8999*********995 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07    0.0003       6     127 ..      57     184 ..      53     226 .. 0.76
   2 ?   -3.4   0.0       2.6   7.7e+03      91     113 ..     295     317 ..     292     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1e-07
  Methyltransf_31   6 rvlDlGCGtGeltfelae.elgp.kaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl.naladp.dkil 94 
                      +vlD+G+Gt + +  +a  e +p + +++  Di+ +     r++++k g++  +F+ +d+++ ++++l+  kfDli    ++ +++ d  +k++
       CDO69438.1  57 HVLDVGAGTCAWIRDFAAmEQIPkGVHLYACDIDTKFFPD-RSETDKFGIT--TFK-QDVTTpFPENLH-GKFDLIRISFLFmCLTEDGwNKAI 145
                      79***********99999966664888*******987654.4445555555..665.577777**9888.8****8554344366666459*** PP

  Methyltransf_31  95 eeiervlkpggilliedpr.....llaelp.akveeesk 127
                      +  ++vlkp+ illi++++      l+elp + +++++ 
       CDO69438.1 146 QHCKQVLKPEAILLIDEADpilypSLSELPpEDATSHDF 184
                      *******************99999888888744444443 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
  Methyltransf_31  91 dkileeiervlkpggilliedpr 113
                      + il+eie+ ++++g++  + ++
       CDO69438.1 295 QRILKEIEEGFRTEGAVTYARYC 317
                      67899999999999988766555 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05      0.22      21      78 ..      54     120 ..      27     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
                 TT-EEEECT-TTSHHHH..HHCCT.T.-SEEEEEESSSS.......HHHTTEEEECS-CCCSSHHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsq..vllqrlgakgkvvavDlqpm.......aplpgvttiqgditdpetiek 78 
                  + +v+D+ga++ +w+    + +++ ++ +++a+D+          +   g+tt++ d+t+p  +++
  CDO69438.1  54 SVSHVLDVGAGTCAWIRdfAAMEQIPKGVHLYACDIDTKffpdrseTDKFGITTFKQDVTTPFPENL 120
                 4567************83233455555799******77767765433337**********9987774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2074.05
//
Query:       CDO69439.1  [L=511]
Description: hypothetical protein BN946_scf184791.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-58  198.8   0.0    4.6e-58  197.1   0.0    1.7  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   2.5e-62   4.6e-58      11     449 ..      48     491 ..      36     503 .. 0.82

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 2.5e-62
                 HCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH CS
        p450  11 gnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf 109
                 + ++    +++ h +l++l+++yg+++r+ +++ +     +p+  ++ l+ +g  ++g  +   l +   +++   v+ +++  + k R   t+++   
  CDO69439.1  48 WLAFLSL-TGKQHLYLKSLHERYGDVVRIGPNELS---FREPSVLEAMLGVGG-VPKGPLNAGRLLS---MTDLPLVAIMDPVVHAKRRMPWTRAFSVA 138
                 3333332.6999***************99777654...467999999999998.8888766666666...66777788888777777777788888888 PP

                 STT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHH CS
        p450 110 gkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllr 207
                  +l ++e++v + +++lv+ l+ + +e     i ++++++a+d++++++Fg   +ll+d +  +  + +e+ + l+++ s     + p l  l   +  
  CDO69439.1 139 -ALkEYEPTVAQRVHQLVQVLQAQEKEV---IIGKFFNYFAYDSMCDVAFGGGSELLRDGDKDNVWQIIEDALLLTAFMS-----HVPYL-GLYFAHMP 227
                 .8889******************99998...8****************************99888888888865554433.....44422.22223445 PP

                 HHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
        p450 208 klkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidev 306
                  + + v++l  + + l+ er +  +++    +d  ++l +++   + +     ++l        +aG+dTtss+l+  +++L+ +P+v+e+l+ Eid+ 
  CDO69439.1 228 IIGATVNRLLSYSKSLVLERIKRGSER----KDIFHYLNNED-RPDLP-PTPVKHLLDDGVLAVVAGSDTTSSALTSLFFCLLAHPHVMERLKAEIDHF 320
                 555555666666666666665555555....56666666664.33333.5566666667777889********************************** PP

                 C.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS...CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS....... CS
        p450 307 l.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk...dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg....... 393
                    + ++ + +   ++pyl+avi+EtLRl+p++p++++R+v++    v ++ y +p Gt + + +y+l+rdp  f p PeeF p+R+l + +       
  CDO69439.1 321 YpSGEDPCDTRNYREMPYLTAVINETLRLYPPIPSGTQRQVPHhgeGVMLGAYPVPPGTAMYLHPYSLQRDPRNFyPFPEEFWPDRWLVAAQrsslsea 419
                 *66666888999******************************9996666666********************8777**************99******* PP

                 ................CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESS CS
        p450 394 ................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppilek 449
                                 +++ ++ aflPF  Gp nC+G++lA++e+++++  lLq+Fe+ l ++ d++  +++
  CDO69439.1 420 lahapgvsksfpldsvDFEHNEAAFLPFAYGPANCVGKQLAMLEMRMVVCALLQKFELRLREGWDVHEYDKG 491
                 ****************9999***************************************9888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.32s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3371.84
//
Query:       CDO69440.1  [L=574]
Description: hypothetical protein BN946_scf184791.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-22   79.4   0.0    7.7e-20   70.9   0.4    2.7  3  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.4   4.3e-24   7.7e-20       3     267 ..      33     302 ..      31     336 .. 0.76
   2 !    0.5   0.0    0.0099   1.8e+02     291     327 ..     303     342 ..     301     354 .. 0.70
   3 !    4.8   0.0   0.00048       8.7     385     422 ..     386     424 ..     377     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 4.3e-24
                  HHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHH.HT.TSSTT-E....EEEE.ESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHH CS
  AMP-binding   3 eqaaktpdkvalvd....sgegqtlTYreldervnrlAagLr.sl.Gvkkgdr....Vail.lpnspewvvallailkaGavvvplnptltaeelayi 89 
                   +a++ p++ a+++    + + + + Y+e ++r++++A     +l G++  ++    +ail l  ++ ++ + +ai ++G ++ pl+p+ +a   a++
   CDO69440.1  33 YHAQNSPEHAAFTYadpvTRQPRDIPYAEAWDRIKSVAGIVSrNLsGLNAASKtrpvIAILaLADTLSYIYLTVAITSLGYTAFPLSPRNSAVVTAHL 130
                  579999******9999*9889*****************8877543366544444477766526899******************************** PP

                  HHHHTESEEEETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHH CS
  AMP-binding  90 ledseakvliatvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlva 186
                  le +    l    +++  ++ l+++a +l   k+ + ++  ++ +e++  +  ++  +    + ++ ++ +d+a+i+ +SGTT +PK + ++ r l +
   CDO69440.1 131 LEVTATVQLY--ASADIgMQTLARDAIDL-LGKKGLEVQVVPMVTEKDYSSPVPALPA---VQVPVDTEDNDVAIILHSSGTTAMPKPIPITRRGLNN 222
                  **99999888..44444455555544433.4444455555555555444444433333...446678999*************************877 PP

                  HHHHHH.HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH...HHHHHHHHHHHT-SEEEEEHHHHHHH CS
  AMP-binding 187 nvaslk.letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaald...pklllelieklkvtviagvPrvleal 267
                    a++  +  + +l  +   +++ p +h++gl     ++l+sGat+ l+p+ +++    p+ +le+  + ++ ++++vP ++e  
   CDO69440.1 223 L-ANIPcFG-EVDLAGKRIAVHTNPTSHAMGL---ATWILTSGATMALYPPISPPAvptPANFLEAWVACRCDIVFCVPVFIEVY 302
                  6.7764222.222323556699*********9...7788999*********9994447899999****************99955 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.0099
                  ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE....C CS
  AMP-binding 291 ggeplspellrffralfgeevlegYGlTEttgvvtv....l 327
                  +g+++++ + + + + +  +++  +G TE ++++++    +
   CDO69440.1 303 CGASVNKGIGDMLASSGV-TLHPFWGSTEVGPATMFiprdP 342
                  566666666666666655.5999***********8644431 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.00048
                  HHHHEEETCC.EEEEEEEEEEET.T.SEEEEEEECCCEEEE CS
  AMP-binding 385 taeafdsegr.wlrTGDlgrlde.d.GyleivgRkkdlikl 422
                  t++ +d + +  +  GDl + ++ d  + +++gRk+d+i l
   CDO69440.1 386 TNSQLD-G-KpVFAVGDLLEQHPaDpNRWRVLGRKDDQIML 424
                  666666.3.449999*****98635468***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4248.44
//
Query:       CDO69441.1  [L=864]
Description: hypothetical protein BN946_scf184817.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 6283.98
//
Query:       CDO69442.1  [L=354]
Description: hypothetical protein BN946_scf184817.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-46  158.5   0.4    3.4e-46  157.9   0.4    1.2  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9   0.4   1.9e-50   3.4e-46      49     301 .]      57     349 ..      42     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 1.9e-50
                  C.CSSCEECSS-SEEETTEEEETTEEEECCCCBT...........TTCEETBSGGG...SB-EEEEEEETTEEEEEEEEEEETCHCSTSEEEEEEEEE CS
  Aldose_epim  49 s.yfgatlgrvanRianGeFeldGkpyqlpqnee...........gknplHGgarg...reWeveevkeddgvtvslvlkpdgeegypgdlevrvtyt 131
                  + +f +++gr+anRi+nG+F++  +    p+ ++           g+ +lHGg++g   r+W+v e ++ ++vt ++   ++ +eg+pg++++  t++
   CDO69442.1  57 HpVFNPIVGRYANRIKNGTFSIP-ISADPPPDGPntfhiptndhdGQDTLHGGIYGwdrRNWTVFERSK-TSVTYYHL--DAADEGFPGNVTAFATHS 150
                  15889****************94.55555555555555555555**********************994.44444444..44469************* PP

                  EETTEEEEEEEEEEESSS-EEEEEEEEEEEETSSC....TCTGGEEEEEEEEEEEECTTSGEEEEEEECTTCCCCCCSSEEHCSSET........... CS
  Aldose_epim 132 LnednelkieyeatndgkptpfnltnHtYFnlsge....sidshelqieadeylevdeeliptgelkdvkgtpfdfrqpkaigedlk........... 214
                  +++ + l+ +++a  + ++tp+ lt H Y+nl       +i +h+l + +++++ vd + iptg + dv++t +dfr p+aig + +           
   CDO69442.1 151 VENGGILHTTVHASAT-EKTPIMLTQHIYWNLDAFqgseDILGHKLHVDGSRVVAVDGDAIPTGPFIDVSDTAYDFRTPQAIGARWNdtfglcgpgcq 247
                  ****************.8***************779************************************************************** PP

                  EEEEEEEESSC..SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT............SEECCEEESSECTCETCCCECHHHT.-EEEHTTTEEEEE CS
  Aldose_epim 215 glDhayllksk..lkaviidpdkksgiklevsttepalvvytgnflk............kylsreglaletqmlpdepnhpefp.sivlkpGesysae 297
                  g+D+++  + +  + +   ++++ sgi+l+v+t+ pa++vyt+ +l+             y ++ ++a+e++ ++d++n pe+  +++  pG+ + + 
   CDO69442.1 248 GYDNCWIYDRSeeKSPGLSLWSDVSGIRLDVTTNNPAVQVYTAYWLDtprkkvhggpslNYTKWTAVAIEQEGYIDAINTPEWHvDQIYYPGKDFFWD 345
                  *****999998889999***************************************************************************999998 PP

                  EEEE CS
  Aldose_epim 298 tsys 301
                  t y+
   CDO69442.1 346 TTYK 349
                  8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 2275.01
//
Query:       CDO69443.1  [L=584]
Description: hypothetical protein BN946_scf184817.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-12   46.8   2.6    1.2e-06   28.1   0.1    2.5  3  FAD_binding_3   FAD binding domain
    9.4e-06   24.7   0.3    5.5e-05   22.2   0.1    2.0  2  Trp_halogenase  Tryptophan halogenase
     0.0012   19.1   0.2     0.0039   17.4   0.2    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0018   17.6   0.5      0.011   14.9   0.1    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.015   15.3   1.8       0.26   11.3   0.3    2.5  2  NAD_binding_9   FAD-NAD(P)-binding
      0.024   14.2   3.1      0.087   12.4   3.1    2.0  1  DAO             FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   3.9e-10   1.2e-06       5     172 ..      94     275 ..      90     303 .. 0.80
   2 !   18.4   0.0   3.5e-07     0.001     284     348 ..     415     486 ..     363     487 .. 0.84
   3 ?   -2.4   0.1      0.72   2.2e+03     226     262 ..     532     569 ..     525     574 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.9e-10
                    EEE--SHHHHHHHHHHHHTTHH.......EEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE...CCCC..CEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvr.......vvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne...lsdt..pkara 88 
                    +IVG+G aGl+la  L ++  +       v++ e   + +  + +  + +rt  ++r lGl ++++a+ ++  +      ++   +++   ++   
     CDO69443.1  94 AIVGGGIAGLTLAVTLGRY-AEdggtpleVRMYESGPEITTVGAGISVWPRTWGIMRRLGLYEQLAAQSVQPPGEDGGEPKPafvFRKSdwQREGH 188
                    7******************.555999999****************************************999976655555576633333344444 PP

                    EHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCC.....CCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHH CS
  FAD_binding_3  89 dlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegv.....taevrdketgeeetvrakYlvGaDGgrStvrktl 172
                    +      p+  t++   ++  +Lv++   + ++++ +++++  +++   v     +++++ + ++ + t + + l+GaDG +S++r +l
     CDO69443.1 189 EFARVMVPQGCTTMHRADMVAVLVKN-LPASCSIHTSKRLTHYTETARAVggredRTVYTLHFADGT-TAETDVLIGADGIKSKTRTAL 275
                    44455888899999999999999999.4556999999998877777666522221344445555555.999***************876 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.5e-07
                    TTEEE-GGGTEEE-STTSHHHHHHH......HHHHHHHHHHHHHHTTSS.-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 284 grvflaGDAaHihpPtgGqGlNtai......qDavnLawkLaavlkGeA.keelLdtYeeerravaqavvdf 348
                    g v l+GDA+H+++   G G   ai      qDa+ L++ La   +  A  +e+   Y++ r+++aq+vv++
     CDO69443.1 415 GAVALVGDAVHAMTTHFGAGGGQAIeltvinQDAYILGRLLADSRTTLArVPEVFRIYQDVRLPFAQRVVNE 486
                    7899****************999997777889**********9888766268*****************986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.72
                    EEEEEECCE-GGGS.CCCHHHHHHHHHHHHHHTTSSCE CS
  FAD_binding_3 226 fyvqvearaekeer.sekfteeevkarlreivgektld 262
                     ++q++++++ ee+ +++ ++ e  +r++++vg+++ +
     CDO69443.1 532 DVWQWQWKERFEEQwEDAKERYERYERYERLVGTSEGE 569
                    58999999886554377777777788888888877665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.9e-08   5.5e-05       2      70 ..      93     165 ..      92     210 .. 0.79
   2 ?    0.2   0.0     0.084   2.5e+02     170     212 ..     228     270 ..     219     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.9e-08
                     EEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE-.SSS---SS-EE--THHHHTHHHHT--HHHHCHHCT-E CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgk...levtlves.eeigtvgvGeatipsirkllrlLgideeeflreteat 70 
                     + ivGGG+aG + A +l+++ ++    lev + es +ei tvg G +  p +  ++r+Lg+ e+   + ++ +
      CDO69443.1  93 LAIVGGGIAGLTLAVTLGRYAEDGgtpLEVRMYESgPEITTVGAGISVWPRTWGIMRRLGLYEQLAAQSVQPP 165
                     68*****************998655689******978**************************9777777654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.084
                     EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-I CS
  Trp_halogenase 170 trvegkvvevqldedgrveslrledgreveadlfiDcsGfrgl 212
                     t+   +   v  +ed  v  l+ +dg++ e d  i + G +++
      CDO69443.1 228 THYTETARAVGGREDRTVYTLHFADGTTAETDVLIGADGIKSK 270
                     55666667777889999**********************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   1.3e-06    0.0039       1      31 [.      95     131 ..      95     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.3e-06
                    EE--SHHHHHHHHHHHCC......TEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka......gfdvlllekrdrl 31 
                    IvG+G++Gl++A +L ++       ++v  +e+++ +
     CDO69443.1  95 IVGGGIAGLTLAVTLGRYaedggtPLEVRMYESGPEI 131
                    9**************9965667556799999999876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.8e-06     0.011       2      41 ..      92     137 ..      91     152 .. 0.80
   2 ?    0.2   0.0      0.12   3.5e+02     208     244 ..     236     274 ..     187     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-06
                  SEEEE--SHHHHHHHHHHHH......HTS-EEEEETTHCHHHCSHH CS
                  xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq......agakvtlvelegtclnggcl 41 
                  +++++GgG+AGl++a tl++        ++v ++e++ ++ ++g  
   CDO69443.1  92 RLAIVGGGIAGLTLAVTLGRyaedggTPLEVRMYESGPEITTVGAG 137
                  789*****************98877669999999977666666554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.12
                  EEEETTE..EEEEEETTSCEEEESEEEE-S-EEES-HHC CS
                  xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 208 eidgnge..klevvledgeeidadlvvvavGvrpstell 244
                  ++ g+++   ++++  dg++ ++d ++ a G++ +t+++
   CDO69443.1 236 AVGGREDrtVYTLHFADGTTAETDVLIGADGIKSKTRTA 274
                  4444444556779999***************99998775 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   8.6e-05      0.26       1      35 [.      94     129 ..      94     138 .. 0.90
   2 ?    2.6   0.1      0.04   1.2e+02     114     152 ..     224     264 ..     186     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.6e-05
  NAD_binding_9   1 aivGaGprGlavlerLlara.kkkspleitlfdpse 35 
                    aivG+G++Gl+++  L + a + ++ple+ +++  +
     CDO69443.1  94 AIVGGGIAGLTLAVTLGRYAeDGGTPLEVRMYESGP 129
                    8*******************9999*******99754 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.04
  NAD_binding_9 114 gvtvevhraevvdleeradg..qavlladgaslaadaVvLA 152
                    + +++++++++ ++  r+d+  ++++ adg++ + d ++ A
     CDO69443.1 224 SKRLTHYTETARAVGGREDRtvYTLHFADGTTAETDVLIGA 264
                    447888888888888888884458889******99988765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.1   2.9e-05     0.087       2      44 ..      93     141 ..      92     341 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
                 EEEECTSHHHHHHHHHH...HHTT.....EEEEESSSSTTSSGGGSSEEEE CS
         DAO   2 vviiGGGiiGlstAyeL...arrg.....VtllekgdiagsgaSgrnsgll 44 
                 ++i+GGGi+Gl+ A  L   a+ g     V  +e+g+++   + g+   ++
  CDO69443.1  93 LAIVGGGIAGLTLAVTLgryAEDGgtpleVRMYESGPEIT--TVGAGISVW 141
                 69***************665555569999*9999997765..333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3835.40
//
Query:       CDO69444.1  [L=705]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-57  192.9   0.0    1.2e-56  192.3   0.0    1.3  1  GMC_oxred_N    GMC oxidoreductase
    9.6e-32  110.5   0.0    1.8e-31  109.6   0.0    1.5  1  GMC_oxred_C    GMC oxidoreductase
    5.1e-05   23.4   0.0    0.00011   22.3   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00052   19.2   0.0    0.00094   18.3   0.0    1.4  1  Lycopene_cycl  Lycopene cyclase protein
     0.0012   18.5   1.1     0.0012   18.5   1.1    2.1  2  DAO            FAD dependent oxidoreductase
     0.0014   18.0   0.4     0.0036   16.6   0.2    1.7  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0073   15.6   1.3      0.018   14.2   0.2    1.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0097   15.0   3.0      0.028   13.5   1.2    2.1  2  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
       0.02   14.1   0.1       0.04   13.2   0.1    1.4  1  Thi4           Thi4 family
       0.03   13.0   1.6      0.092   11.4   0.2    2.0  2  HI0933_like    HI0933-like protein
       0.15   12.2   0.0        7.4    6.7   0.0    2.7  2  TmoB           Toluene-4-monooxygenase system protein B (TmoB
       0.97   10.0   3.2        4.9    7.8   0.4    2.7  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   8.1e-60   1.2e-56       1     295 [.      54     371 ..      54     372 .. 0.90

  Alignments for each domain:
  == domain 1  score: 192.3 bits;  conditional E-value: 8.1e-60
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl....imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRt 94 
                  +d++++ggG+ag ++A+RLsed +t+vlvleag      +     +v a    l   +++++y+t  +++ n+r+l +p+Gk lGG+s++N+ + +R+
   CDO69444.1  54 YDFVIVGGGTAGLAIASRLSEDANTTVLVLEAGDTGDAVAdsinVPVNAYYAGLPGTSYDWQYTTVKQPNANNRALPWPRGKLLGGSSAMNGLYTVRP 151
                  79*******************************876665558644555555678999***************************************** PP

  GMC_oxred_N  95 paadldeWeeeag..legwssdevlpafkkvetaqale............sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcG 178
                  ++  +d W++      + w++d + +a+k++et + +             +  +g+ g++++ +      p++  + +   + G+ v++d+ +++  G
   CDO69444.1 152 SKIEVDAWAALNDgaSDKWNWDALFNAMKQSETFTPPSsqvqqtgniqydAASRGTSGPVHA-TYPGFMVPIVGNWTSTLADIGVFVNNDAYNGEGWG 248
                  ********9854312578**************9888889999******99999*********.8888889999*************999987775555 PP

  GMC_oxred_N 179 .vcllgv.tcrtgarqstarawLrpalerpnleiltgakaekiil...egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGka 271
                   +  +   +  +  r+ + +a+++p   rpnl +l +a+++++++   ++++  a+GVe+  + + ++++v  +kev++a+Ga+ sP++L++SG+G+ 
   CDO69444.1 249 aFVATSSiNPANWTRSYSRSAYIDPLPPRPNLAVLPNATVTRLLFdssNKNNLTATGVEWAVSANAARQTVKVNKEVILAGGAVGSPTVLMLSGVGPS 346
                  14445555777889999****************************988777889******************************************** PP

  GMC_oxred_N 272 ehLkevgvdvvvdlp.vGknLqdHp 295
                  + L+  gvdv vdlp vG+ LqdH+
   CDO69444.1 347 DVLQAAGVDVLVDLPgVGQHLQDHI 371
                  ************************6 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   1.2e-34   1.8e-31       1     144 []     499     636 ..     499     636 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.2e-34
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  P+s Grv+++ sdp   p+idp+yl + +dl  l+e+lk arki ++++l   l  e+ pg        +v+sd ++e+ +  ++ t +Hp+++c+M 
   CDO69444.1 499 PYSHGRVYITTSDPFTLPAIDPQYLAHNADLVLLREGLKLARKIGNSPPLsAALGDEVSPGS-------SVQSDSDWEDWLAGQIGTEYHPSCSCAML 589
                  89**********************************************86556666666666.......9999999********************** PP

                  STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  98 adpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +++  +VVD+dl+v+g+ n+rV+DaSvfP + +a+ +++++ lAe+a
   CDO69444.1 590 PRELGGVVDPDLKVYGLGNVRVADASVFPIQFSAHLQAPVYGLAEQA 636
                  ********************************************986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.5e-08   0.00011       1      29 [.      58      87 ..      58     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.5e-08
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrd 29
                   IvG+G +Gl++A++L+++ +  vl+le++d
     CDO69444.1 58 IVGGGTAGLAIASRLSEDaNTTVLVLEAGD 87
                   9***************98799******996 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.3e-07   0.00094       1      34 [.      55      87 ..      55     124 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.3e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   D v++G+G Agl++A rl ++ ++  v+++ea++
     CDO69444.1 55 DFVIVGGGTAGLAIASRL-SEDANTTVLVLEAGD 87
                   89****************.7888999*****997 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.1   7.9e-07    0.0012       1      33 [.      55      89 ..      55      98 .. 0.87
   2 ?   -1.5   0.2      0.95   1.4e+03     192     204 ..     320     333 ..     279     452 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.9e-07
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiag 33
                d vi+GGG +Gl++A  L++     V++le+g + g
  CDO69444.1 55 DFVIVGGGTAGLAIASRLSEDAnttVLVLEAG-DTG 89
                89****************9884589******9.555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.95
                 EEEE.EEE--GGGH CS
         DAO 192 aada.vVnaaGaws 204
                 ++++ v++a Ga  
  CDO69444.1 320 KVNKeVILAGGAVG 333
                 33445888887653 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   2.4e-06    0.0036       1      35 [.      57      91 ..      57      94 .. 0.93
   2 ?   -2.3   0.0       1.4   2.1e+03     126     140 ..     323     337 ..     295     346 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.4e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnigns 35
                 +I+G+G aGla+a  l +   +++l+lE g  g++
   CDO69444.1 57 VIVGGGTAGLAIASRLSEDANTTVLVLEAGDTGDA 91
                 7*****************9999********99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
  Pyr_redox_3 126 kkviiAtGefdkPnk 140
                  k+vi+A G  + P +
   CDO69444.1 323 KEVILAGGAVGSPTV 337
                  445555555555554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   1.2e-05     0.018       1      33 [.      54      87 ..      54     100 .. 0.82
   2 ?   -0.5   0.0       0.4     6e+02     194     250 ..     302     354 ..     293     370 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                 CSEEEE--SHHHHHHHHHHHH.HTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.agakvtlveleg 33
                 +d v++GgG AGla a +l++ a+  v+++e+++
   CDO69444.1 54 YDFVIVGGGTAGLAIASRLSEdANTTVLVLEAGD 87
                 589******************6677777776443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
                  HHTTEEEEESCEEE..EEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT- CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 194 ekeGvevklgtsvk..eidgngeklevvledgeeidadlvvvavGvrpstelleeklgl 250
                  ++ Gve+ + +++   +++ n+e   v+l  g  +   +v++  Gv ps+ l  +++g+
   CDO69444.1 302 TATGVEWAVSANAArqTVKVNKE---VILAGGA-VGSPTVLMLSGVGPSDVL--QAAGV 354
                  55555555554443223333333...5555555.466667777777777666..45555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.2   1.8e-05     0.028       1      32 [.      55      87 ..      55      95 .. 0.84
   2 ?    0.7   0.0      0.15   2.2e+02     158     204 ..     282     334 ..     276     355 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeq 32
                   D +++G+G AGLa A +++e    +v+v+e ++
     CDO69444.1 55 DFVIVGGGTAGLAIASRLSEDANtTVLVLEAGD 87
                   88******************6664888888765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.15
                    EEESEEEEEEEECTT.....EEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 158 fqerteadeLivedg.....rvtGavvenpesgrevrirak.avvlatgGfgr 204
                    +++++ +++L+ ++       +tG++ + +++  +++++ +  v+la g++g 
     CDO69444.1 282 VLPNATVTRLLFDSSnknnlTATGVEWAVSANAARQTVKVNkEVILAGGAVGS 334
                    678889999999744566789999999999888888777777*******9997 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.7e-05      0.04      18      49 ..      54      85 ..      42      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 D vivG+G++GL+ a  l+++ +  v++le+
  CDO69444.1 54 YDFVIVGGGTAGLAIASRLSEDANTTVLVLEA 85
                599***************************96 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   6.1e-05     0.092       2      33 ..      55      87 ..      54      92 .. 0.87
   2 ?    0.4   0.1      0.13     2e+02     212     297 ..     306     387 ..     282     439 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekak 33
                 d +++GgG AGl  A ++ ++++  Vl+le+++
   CDO69444.1 55 DFVIVGGGTAGLAIASRLsEDANTTVLVLEAGD 87
                 789************999677899999999875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.13
                  -EEEEEEE...ECTTEEEEEEEEE-SSEEESHHHHHHTTT-......-TT--EEEECSTTS-...HHHHHHHHHHHTTTSBHHHHH CS
  HI0933_like 212 vslkavvlslkkkkkatekgellfThrGlsGpailqlSsyvakalekkeeetleidllPdldaeelkaalekekekeskkslknal 297
                  v+    +    ++++++ ++e++++   +  p +l lS +  + + + +++ + +dl P++  ++l+++++++   +++ + +n+l
   CDO69444.1 306 VEWAVSAN--AARQTVKVNKEVILAGGAVGSPTVLMLSGVGPSDVLQAAGVDVLVDL-PGVG-QHLQDHISTQVVWTTHAQTANSL 387
                  44333332..35566667778888888888899999999999999999999999996.7766.67777777766555555555554 PP

>> TmoB  Toluene-4-monooxygenase system protein B (TmoB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.005       7.4       2      36 ..      66     100 ..      65     111 .. 0.91
   2 ?    2.3   0.0      0.12   1.9e+02      23      65 ..     448     491 ..     439     499 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
        TmoB   2 lPlvavfegDfvvqLvaVdtedtmdqVaekvahha 36 
                 l++ +++++D+ + +++ +  dt d+Va+ + +++
  CDO69444.1  66 LAIASRLSEDANTTVLVLEAGDTGDAVADSINVPV 100
                 6899*************************998876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
        TmoB  23 dtmdqVaekvahhavGrrvrpkpgaplrVr..rqGevlprsmtva 65 
                 d +++  e++  ++v+  + +     ++++   +G+++++s+tva
  CDO69444.1 448 DEVKKGYEAIYNTTVNSILTSPV-GQVEILfsLTGQPVDGSATVA 491
                 55555567777777777665333.3455555789**********8 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4    0.0033       4.9       3      32 ..      57      87 ..      55      92 .. 0.82
   2 ?   -2.7   0.0       6.2   9.2e+03      10      27 ..     304     321 ..     303     323 .. 0.83
   3 ?    1.5   0.0       0.3   4.4e+02      52      74 ..     451     474 ..     447     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0033
                EEECSSHHHHHHHHHHHH.TTSEEEEEESSS CS
   Pyr_redox  3 vvvGgGyiglElAgalae.lgkkVtvversd 32
                v+vGgG+ gl  A+ l+e  +  V v+e++d
  CDO69444.1 57 VIVGGGTAGLAIASRLSEdANTTVLVLEAGD 87
                9***************884666777777665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.2
                 HHHHHHHHHHHTTSEEEE CS
   Pyr_redox  10 iglElAgalaelgkkVtv 27 
                 +g+E+A  +++ ++ V+v
  CDO69444.1 304 TGVEWAVSANAARQTVKV 321
                 699***999998887765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.3
                 HTTEEEECSEEEEEEEEETTS.EE CS
   Pyr_redox  52 kngievllntkveeiegsedg.ve 74 
                 k+g e ++nt+v++i +s+ g ve
  CDO69444.1 451 KKGYEAIYNTTVNSILTSPVGqVE 474
                 689999**********99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4824.59
//
Query:       CDO69445.1  [L=571]
Description: hypothetical protein BN946_scf184817.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3755.89
//
Query:       CDO69446.1  [L=223]
Description: hypothetical protein BN946_scf184817.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1467.57
//
Query:       CDO69447.1  [L=543]
Description: hypothetical protein BN946_scf184817.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-18   65.0   0.0    1.5e-17   63.9   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain
    1.2e-05   25.2   0.0    2.4e-05   24.2   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.31   11.3   2.9        2.6    8.3   0.5    2.5  2  E7          E7 protein, Early protein


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   2.5e-21   1.5e-17      15     109 ..     160     259 ..     146     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 2.5e-21
                 TTSEEEEEESSHHHHHH.HHHHHHHT.....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  15 eggkilifvntidrlek.vklllekk.....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                 +  ++++fvn  ++++  ++ l++ +     +  +  +h++  q+ +ee+le f++g+++vLiat +a++G+dip+++l+++f++p+n+    qr+GR+
  CDO69447.1 160 DLPRTIVFVNELSKCHAaAHRLRQ-RvaeplQSAIGHFHAKRAQSAKEEALEGFRDGRIRVLIATEAAGMGMDIPDIELIVQFGVPENLCVWLQRAGRA 257
                 55789********99877555533.24677799999*************************************************************** PP

                 SS CS
  Helicase_C 108 gR 109
                 gR
  CDO69447.1 258 GR 259
                 ** PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     4e-09   2.4e-05      92     174 ..      22     107 ..       4     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4e-09
                 HHHHTTCSEEEEEHHHHHH.HH.....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHH CS
                 xxxxxxxxxxxxxxxxxxx.xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD  92 skldngvdivvgtpgrldd.ll.....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvk 174
                 + l  +++i+++ p++l +  +     +t+    ++v  +++DEa+++ ++    + ++   ++ +  +  +++  v++ SAT++ + ++
  CDO69447.1  22 EGL--KYNIILTSPEMLEQpDVrkitsNTRF--AKRVGAFIVDEAHCIKQWAKDSKFREHYGRVGTLRSIAPQNTPVLATSATMTcSALS 107
                 333..599********999766665433333..99****************7777777777777666777777778********977665 PP

>> E7  E7 protein, Early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.5   0.00044       2.6      23      52 ..     289     317 ..     259     339 .. 0.61
   2 ?    2.6   0.1     0.026   1.6e+02      18      41 ..     504     529 ..     485     541 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00044
                 -----XXXXXXXXXXXXXXXXXXXXEE.EE CS
          E7  23 eeelesedeeeeeedeptlkdktprrpgYa 52 
                  e ++s+  eeee+d +t+++++p +++Y+
  CDO69447.1 289 IEGTDSDFYEEEEQD-ETQQQVKPSKKSYK 317
                 244455555677777.56667777777798 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.026
                 X--S------..XXXXXXXXXXXXXX CS
          E7  18 ldllceeele..sedeeeeeedeptl 41 
                 l+l+ +e l+  ++ +ee+e+++ + 
  CDO69447.1 504 LELHGDEVLQlvKKLDEEDEQQRHAR 529
                 78899998772234455555553322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3781.21
//
Query:       CDO69448.1  [L=267]
Description: hypothetical protein BN946_scf184817.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-11   42.8   0.5    6.7e-06   26.9   0.1    2.1  2  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   3.7e-10   6.7e-06      13      93 ..      32     163 ..      10     190 .. 0.70
   2 !   15.0   0.1   1.5e-06     0.027     169     220 .]     194     248 ..     157     248 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.7e-10
                    .GC..HHHH.HHHHCCT......CEEEEE--TTST....................S-GGCS--HHH....CHHH...HHHHCCTT......TTSEE CS
  Abhydrolase_6  13 sWl..vapL.aallaag......vhvlapDlpGhG....................rsdpppldled....ladl...aalldelaa....gggpvv 68 
                     Wl  v +L a  ++ +      v+ +++Dlp hG                    ++++++ ++++    +a +   +all+ l++     g +vv
     CDO69448.1  32 TWLptVEELfAIQRTTRtnafavVEAWSMDLPTHGhaavinekalvayghkiseqPPSSDAVHWTRwlthVAGWhvaRALLAFLGSglvaPGAKVV 127
                    56434444444444444566667899*********888888888888888887775566666666654333333443556666666787899999* PP

                    EEEETCHHHHHHHHHHCC.............EEEEE CS
  Abhydrolase_6  69 lvGHSlGGalalaaapla...........lvvgvll 93 
                    +vGHS  +a+  +a  +a           l +gv l
     CDO69448.1 128 AVGHSASAAIIVEATEHAmrdlptasypdLKEGVTL 163
                    *********999988888776666666554444555 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-06
                    -TTGCEEECTT-CHHHHCHHCCCH..STTEEET..CE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 169 lpvpllvlggeDplvprllerlla..qagarlp..vvlpgaGHlphleepdevaea 220
                    +pv++ v+gg++++vp  ++++    ++g+r+   v ++g+GHl+ +e+p ++a+a
     CDO69448.1 194 VPVHC-VFGGQNDMVPLEAQEAFLdeKTGRRMRsiVRVAGSGHLVVQENPGALARA 248
                    33333.44899998886666555567444555455********99999****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2091.88
//
Query:       CDO69449.1  [L=1485]
Description: hypothetical protein BN946_scf184817.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-38  127.5  32.3    1.6e-09   38.2   0.0   11.8 12  WD40          WD domain, G-beta repeat
    5.4e-26   90.7   0.7     0.0035   17.6   0.0    9.5 10  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.9e-07   31.2   0.1      4e-07   30.1   0.1    1.6  1  NACHT         NACHT domain
    0.00015   22.1   0.0     0.0004   20.7   0.0    1.7  1  AAA_22        AAA domain
     0.0007   18.2   0.0        2.5    6.5   0.0    4.1  4  Cytochrom_D1  Cytochrome D1 heme domain
    0.00081   18.8   0.0       0.23   10.7   0.0    2.4  2  WD40_like     WD40-like domain
    0.00084   18.4   0.6        4.5    6.1   0.0    4.8  5  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
     0.0052   17.2   0.4      0.028   14.8   0.0    2.5  2  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.016   14.2   3.4      0.049   12.6   1.1    2.9  4  PALB2_WD40    Partner and localizer of BRCA2 WD40 domain
      0.026   13.2   0.4        2.4    6.7   0.2    3.0  3  Nup160        Nucleoporin Nup120/160
       0.11   11.7   1.2        0.2   10.9   0.6    1.5  1  KAP_NTPase    KAP family P-loop domain
       0.14   11.8   0.0       0.39   10.4   0.0    1.7  1  AAA_30        AAA domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.4     3e-07   0.00045      13      38 .]     823     848 ..     807     848 .. 0.85
   2 !   38.2   0.0   1.1e-12   1.6e-09       1      38 []     852     890 ..     852     890 .. 0.96
   3 !   10.4   0.3   0.00064      0.96      16      38 .]     911     933 ..     894     933 .. 0.81
   4 !   10.6   0.6   0.00057      0.86      10      38 .]     946     974 ..     941     974 .. 0.83
   5 !   16.3   0.0     9e-06     0.013       2      37 ..     979    1014 ..     978    1015 .. 0.86
   6 ?    4.4   0.3      0.05        75      14      31 ..    1072    1089 ..    1067    1091 .. 0.82
   7 ?   -2.6   0.0       8.5   1.3e+04      13      26 ..    1130    1143 ..    1125    1144 .. 0.82
   8 !   26.3   0.8   6.1e-09   9.2e-06       5      38 .]    1164    1199 ..    1160    1199 .. 0.77
   9 !    8.1   0.0    0.0036       5.3       1      35 [.    1203    1238 ..    1203    1240 .. 0.93
  10 ?    0.5   0.0      0.91   1.4e+03      13      31 ..    1257    1275 ..    1246    1275 .. 0.79
  11 ?   -2.5   0.0         8   1.2e+04      13      30 ..    1323    1340 ..    1317    1348 .. 0.77
  12 ?    3.4   0.0      0.11   1.6e+02       9      27 ..    1370    1395 ..    1365    1400 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3e-07
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                  +s+ fs+dg++++sG+dD+++r+W+
  CDO69449.1 823 LRSVGFSQDGKYVVSGGDDNKIRLWK 848
                 46677********************6 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 1.1e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+ lrt++GH + +ts++fsp g+ ++sGs D+tv++Wd
  CDO69449.1 852 GKELRTFEGHlGAITSVSFSPTGREILSGSSDKTVKLWD 890
                 6889******999****************99*******9 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00064
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                 +a+s dg+++asG+d g+v +W+
  CDO69449.1 911 VAWSLDGTLIASGCDEGKVFVWS 933
                 56777*****************5 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00057
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H + v++l f  d ++l s+sdD+t+ +Wd
  CDO69449.1 946 HhDRVRGLVFTLDRTLL-SASDDKTCNMWD 974
                 53669999898899998.6888*******9 PP

  == domain 5  score: 16.3 bits;  conditional E-value: 9e-06
                  EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37  
                  ++lr+l+ H s v+++a+spd++++a+G +   + iW
  CDO69449.1  979 KLLRSLK-HtSRVRCVAVSPDNRLVACGVEQDEIAIW 1014
                  5789998.8677**************99888888888 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.05
                  EEEEEETTSSEEEEEETT CS
        WD40   14 tslafspdgawlasGsdD 31  
                  +s+afspd + +a+G+ D
  CDO69449.1 1072 SSVAFSPDCTHVAAGTSD 1089
                  699************547 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 8.5
                  EEEEEEETTSSEEE CS
        WD40   13 vtslafspdgawla 26  
                   +s+a sp g++l+
  CDO69449.1 1130 LSSVAISPTGQLLL 1143
                  57999*****9985 PP

  == domain 8  score: 26.3 bits;  conditional E-value: 6.1e-09
                  EEEESS...SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    5 rtltGH...ssvtslafspdgawlasGsdDgtvriWd 38  
                  +t++ H   s+  s+a+sp g+++asG++Dgtv +Wd
  CDO69449.1 1164 HTIK-HgriSGCFSIAWSPAGNFIASGGYDGTVCVWD 1199
                  5554.62233356888********************9 PP

  == domain 9  score: 8.1 bits;  conditional E-value: 0.0036
                  TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40    1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvr 35  
                  g+c+rt+  + s+v ++ f pd + ++s+s+ gt+r
  CDO69449.1 1203 GRCIRTYAEQtSCVKAVVFTPDEQQVISASYCGTIR 1238
                  68*****999788****************9999998 PP

  == domain 10  score: 0.5 bits;  conditional E-value: 0.91
                  EEEEEEETTSSEEEEEETT CS
        WD40   13 vtslafspdgawlasGsdD 31  
                   t+la s++++w++s++ D
  CDO69449.1 1257 LTALALSSSQRWMLSATSD 1275
                  799*********9987435 PP

  == domain 11  score: -2.5 bits;  conditional E-value: 8
                  EEEEEEETTSSEEEEEET CS
        WD40   13 vtslafspdgawlasGsd 30  
                  v slafs d + +++G +
  CDO69449.1 1323 VASLAFSEDCSRVLAGNE 1340
                  78999**99999998854 PP

  == domain 12  score: 3.4 bits;  conditional E-value: 0.11
                  SS.SS......EEEEEEETTSSEEEE CS
        WD40    9 GH.ss......vtslafspdgawlas 27  
                  GH ++      v  ++fs+dg+++++
  CDO69449.1 1370 GHrFHsgstrpVKQISFSHDGRYIVT 1395
                  55433346788************986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.4e-06    0.0035       2      77 ..     779     859 ..     778     863 .. 0.85
   2 !   14.1   0.0   2.9e-05     0.043      39      89 ..     863     913 ..     858     913 .. 0.92
   3 !    9.3   0.0    0.0009       1.3      43      72 ..     910     939 ..     901     957 .. 0.81
   4 ?    3.9   0.1     0.044        66      38      87 ..     947     993 ..     931     995 .. 0.81
   5 !    9.3   0.0   0.00094       1.4      35      82 ..     984    1031 ..     971    1057 .. 0.82
   6 !    6.6   0.0    0.0062       9.3      34      79 ..    1123    1169 ..    1110    1175 .. 0.86
   7 !   16.0   0.0   7.2e-06     0.011      43      88 ..    1176    1220 ..    1168    1224 .. 0.86
   8 ?    3.8   0.0     0.047        70      19      81 ..    1304    1363 ..    1300    1389 .. 0.84
   9 ?   -2.2   0.0       3.5   5.2e+03      37      54 ..    1377    1394 ..    1370    1398 .. 0.83
  10 ?    2.8   0.0       0.1   1.5e+02      45      67 ..    1460    1482 ..    1453    1484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-06
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRl..ngqrvwtl...eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  +++p   L+    +++ l+v R+     r w+    ++ ++d++ rs+ +++dgk  + + +d+++rl + ++gk +++++
   CDO69449.1 779 AFSPASSLLRRRYSTEVLNVVRIcvGLDRTWSSalsTTVADDRSLRSVGFSQDGKYVVSGGDDNKIRLWKTQTGKELRTFE 859
                  5677777777777888888888833448899888888899***********************************999886 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + ++s++++p g+ +  + sd +v+l d+ +g ++++++  s+ +   + W
   CDO69449.1 863 GAITSVSFSPTGREILSGSSDKTVKLWDVVTGACLRTWQPRSSGQLILVAW 913
                  679************************************999988888877 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0009
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkv 72 
                   +aW+ dg+l+a ++++g+v + ++ s + 
   CDO69449.1 910 LVAWSLDGTLIASGCDEGKVFVWSVASSEA 939
                  579*******************99998876 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.044
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                    +vr+L +  d + L  a +d ++++ d + +k+++sl+ +s   v c+
   CDO69449.1 947 HDRVRGLVFTLD-RTLLSASDDKTCNMWDTHRAKLLRSLKHTSR--VRCV 993
                  567888988876.556678899*****************98877..7776 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00094
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82  
                    k+ s+vr++a +pd++l a ++++ e+ +    +g+ + sl++ s+ 
   CDO69449.1  984 LKHTSRVRCVAVSPDNRLVACGVEQDEIAIWTRADGRRLFSLKCPSDP 1031
                   578899999*********************999999999999998873 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0062
  ANAPC4_WD40   34 edkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvk 79  
                   ++++++  +s+a +p g+lL v ++   + rl+d+++g+  h+++ +
   CDO69449.1 1123 DPNRSGPLSSVAISPTGQLLLVHVEAAkKTRLYDISKGRYTHTIKHG 1169
                   567778889999*********99887659*************99876 PP

  == domain 7  score: 16.0 bits;  conditional E-value: 7.2e-06
  ANAPC4_WD40   43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88  
                   s+aW+p g+++a +  dg+v + d+ +g++++++  +++ +v+ + 
   CDO69449.1 1176 SIAWSPAGNFIASGGYDGTVCVWDSRTGRCIRTYAEQTS-CVKAVV 1220
                   79******************************9966554.677665 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.047
  ANAPC4_WD40   19 llvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81  
                   l+++  +g+ vw     + +++v sLa+++d +    + ++ge  l+d  +  +v  ++++  
   CDO69449.1 1304 LRLHDASGRVVWME---NYQGRVASLAFSEDCSRVLAGNEEGETFLYDLTQLILVYDSTTHPA 1363
                   56666777888877...999****************************998888887777765 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 3.5
  ANAPC4_WD40   37 edsevrsLaWkpdgklLa 54  
                   + + v+++++++dg+ ++
   CDO69449.1 1377 STRPVKQISFSHDGRYIV 1394
                   6789**********9987 PP

  == domain 10  score: 2.8 bits;  conditional E-value: 0.1
  ANAPC4_WD40   45 aWkpdgklLavaysdgevrllda 67  
                   +W+  g+ +a+   dg++ ++da
   CDO69449.1 1460 QWSVVGHTIAIIATDGRLVIIDA 1482
                   6********************98 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   2.7e-10     4e-07       3     163 ..     255     440 ..     253     446 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.7e-10
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.......-HCHHHCCCCTS--SSS-C.......CHHHHCCSCCCEE...... CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna....rsladllfsqlpepaapvse.......vwavllelperlL...... 84 
                 ++++  aG GK+tL+q +a+ w e++  +        ++++++ +++n+    r++a++l+  +p+  ++  +       +     +lp r L      
  CDO69449.1 255 LWIHALAGAGKSTLAQTVAEWWDEDQVLGA------SFFCARDGERSNIlsifRTIAYQLACRFPWFHDALIRvvkadldI---YSSLPSRQLqklive 344
                 788888*************99999997774......355666666666668899999999999999999988866664442...444444444666899 PP

                 ..................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH....HCTTSSCE..EEEE--TCCHHHHHHHH CS
       NACHT  85 ..................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd....leeqleeaivlevegfsesrrkqlvrk 161
                                    ++D+lDe+ + +       + + Ls  i+   l+  ++++t+rp+        l+ +l++++ l + ++    +k+ v+ 
  CDO69449.1 345 plqaarsekklpdnacivVVIDALDECTDSDAV---STILKSLSLYISN--LTPLKFVITSRPEENIArgflLQTLLATTQNLSLTDIPDALAKRDVSN 438
                 99999999999*****************97777...6777777777888..999*********998555666666666667777666555555544444 PP

                 CT CS
       NACHT 162 yf 163
                 +f
  CDO69449.1 439 FF 440
                 44 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.7e-07    0.0004       5     130 ..     252     399 ..     249     405 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.7e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsst..sskdllrellralglelka.....................erlssee 77 
                  +il +++ +G+GK+tl+++++e+ d        +++v+   f+++  ++  +  +++r ++ +l   +                       +  +++ 
  CDO69449.1 252 SSILWIHALAGAGKSTLAQTVAEWWD--------EDQVLgasFFCARDGErsNILSIFRTIAYQLA--CRFpwfhdalirvvkadldiysslPSRQLQK 340
                 57999*******************97........55555775666666667788999999998888..77789****************6665555566 PP

      AAA_22  78 llealeqalrarav........ielliiDEaqhlr.s...eealeeLrsllnlsrkgvqliLvGt 130
                 l+    + l+a++           +++iD  +  + s    ++l+ L sl+   + +++l +v+t
  CDO69449.1 341 LI---VEPLQAARSekklpdnaCIVVVIDALDECTdSdavSTILKSL-SLYI--SNLTPLKFVIT 399
                 65...4444444444448*99999*********86443444444444.4444..55555555554 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.017        26       8      71 ..     835     898 ..     828     931 .. 0.79
   2 !    6.5   0.0    0.0017       2.5      41      94 ..     953    1005 ..     925    1008 .. 0.90
   3 ?    1.0   0.0     0.082   1.2e+02      58     114 ..    1151    1208 ..    1131    1270 .. 0.78
   4 ?    0.3   0.0      0.13   1.9e+02     286     329 ..    1344    1393 ..    1342    1396 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.017
                   EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEE CS
  Cytochrom_D1   8 vvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeiva 71 
                   vv   d+ k++l   ++ ++l ++e++    +s+ f++ gR ++  + D +v+l D+ +   ++
    CDO69449.1 835 VVSGGDDNKIRLWKTQTGKELRTFEGHLGAITSVSFSPTGREILSGSSDKTVKLWDVVTGACLR 898
                   67778999*******************9999***********************9998777554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0017
                    EE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEE CS
  Cytochrom_D1   41 rvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivg 94  
                     vf+  +R ++ ++ D + ++ D ++ + ++ +k  +  r vavS d+r+v+ g
    CDO69449.1  953 LVFTL-DRTLLSASDDKTCNMWDTHRAKLLRSLKHTSRVRCVAVSPDNRLVACG 1005
                    56777.7999999**************************************987 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.082
                    EEEEEESSSSSEEEEEE-S..SEEEEEEE--TTSEEEEEEEETTEEEEEETTT--EEEE CS
  Cytochrom_D1   58 kvtliDLwakeivaevkiG..lnarsvavSqddryvivgnYlPgqlvildaetLelvkv 114 
                    k+ l+D+ + +  +++k G  +   s+a S  + +++ g Y  g++ + d++t   +++
    CDO69449.1 1151 KTRLYDISKGRYTHTIKHGriSGCFSIAWSPAGNFIASGGYD-GTVCVWDSRTGRCIRT 1208
                    56789999999999****943356799999**********96.99999**999776654 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.13
                    -TT-SSHT-EEEEETTBT-EEE-HHHHHT--......EEEEEE-TTSSEE CS
  Cytochrom_D1  286 aflnpdndsvaviDkktlekvltlaesaglk......vvhvEfnkdGdev 329 
                    +fl+   + + v+D+ t+    +l ++   +      v ++ f++dG+++
    CDO69449.1 1344 TFLYDLTQLILVYDSTTHPAQPPLVPGHRFHsgstrpVKQISFSHDGRYI 1393
                    6777778999********7766666655544555566**********997 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00016      0.23       5     142 ..     825     969 ..     821    1059 .. 0.64
   2 !    5.6   0.0    0.0056       8.4       4      72 ..    1175    1244 ..    1172    1254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllenee...evenekieedistvkvidd.klliG 98 
                 s+ +s++g++++ Gg+d+k+++ k++++++   +e+    +  v +      il ++ D t+ l ++  +    + + ++  + i ++  +d+  ++ G
  CDO69449.1 825 SVGFSQDGKYVVSGGDDNKIRLWKTQTGKELRTFEGHLGAITSVSFSPTGrEILSGSSDKTVKLWDVVTGAclrTWQPRSSGQLILVAWSLDGtLIASG 923
                 899********************************9999988888875443899999998888888888773423333444444444444443145567 PP

   WD40_like  99 tnkGsiyvfskdlqleevllgqsse.Ikeik.iennkiysLsesaf 142
                  ++G+++v+s   +   + lg++ + ++ +  + + ++ s s+++ 
  CDO69449.1 924 CDEGKVFVWSVASSEAPTGLGWHHDrVRGLVfTLDRTLLSASDDKT 969
                 7888888877775555666666544244443133445555555554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0056
   WD40_like    4 YsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllen 72  
                  +si  s+ g++i+ Gg d ++ v + +++  +   ++ +  v  v +  d+ +++ ++  Gti    +++
  CDO69449.1 1175 FSIAWSPAGNFIASGGYDGTVCVWDSRTGRCIRTYAEQTSCVKAVVFTPDEqQVISASYCGTIRRFHIHK 1244
                  8999*********************************999999999987765888999999997666654 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.003       4.5     184     234 ..     858     904 ..     842     911 .. 0.82
   2 ?    3.6   0.0     0.018        26     190     221 ..     908     939 ..     903     950 .. 0.82
   3 ?   -0.9   0.0      0.42   6.2e+02     182     209 ..    1063    1090 ..    1032    1093 .. 0.74
   4 ?    2.0   0.0     0.055        82     185     221 ..    1211    1247 ..    1171    1254 .. 0.86
   5 ?   -2.1   0.0      0.94   1.4e+03      60      97 ..    1315    1351 ..    1304    1392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.003
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhd 234
                 +e h   i++ +fsp G  +   s+d +vk++ v         CL  W+P  
  CDO69449.1 858 FEGHLgAITSVSFSPTGREILSGSSDKTVKLWDVVT-----GACLRTWQPRS 904
                 556644899***********************9975.....57999999975 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvylede 221
                 ++  a+s dGt +a  + +G+v  + v  +++
  CDO69449.1 908 LILVAWSLDGTLIASGCDEGKVFVWSVASSEA 939
                 566789****************9999977665 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.42
    Ge1_WD40  182 lkieehsliveaafspdGtalatasedG 209 
                  l++ ++ + ++ afspd t +a+ ++d 
  CDO69449.1 1063 LELLNDVESSSVAFSPDCTHVAAGTSDA 1090
                  5556666667889*********999885 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.055
    Ge1_WD40  185 eehsliveaafspdGtalatasedGevkffqvylede 221 
                  e++s++   +f+pd   +  as  G+++ f ++ + +
  CDO69449.1 1211 EQTSCVKAVVFTPDEQQVISASYCGTIRRFHIHKSMS 1247
                  6778999999********************9987744 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.94
    Ge1_WD40   60 Llkglkgevldlafahvsskillavdekgslfvykvee 97  
                   + + +g+v+ laf+  +++++la +e+g+ f+y++++
  CDO69449.1 1315 WMENYQGRVASLAFSE-DCSRVLAGNEEGETFLYDLTQ 1351
                  4667788888888874.566666667888888887764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       7.4   1.1e+04      57      95 ..      91     131 ..      73     189 .. 0.59
   2 !   14.8   0.0   1.9e-05     0.028      24     150 ..     252     374 ..     236     396 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.4
      AAA_16  57 rgkcdql.esa.ipysalaqalareellrqlldeaesaele 95 
                 + +++++ +s+  + +  a+ l   +l + ll+++++ae+ 
  CDO69449.1  91 KKRFEDFaRSKvQSVADSARKLQSQGLAARLLNASDNAEAT 131
                 44455553222122233666665555555555554443333 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.9e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala....avpelagae 115
                 ++++ ++  +G GKs+l++++++ + +d   g   ++  c +     ++s +++++ r ++  ql+ +     ++ ++++l ++++    + ++l++  
  CDO69449.1 252 SSILWIHALAGAGKSTLAQTVAEWWDEDqvlG---ASFFCARD---GERSNILSIF-R-TIAYQLACR-----FPWFHDALIRVVKadldIYSSLPS-- 335
                 3899******************9999994442...44444444...2223488888.6.777777766.....455555555555522223333333.. PP

      AAA_16 116 asrllellkrllallsrder....p.lvlvlDdlqwadea 150
                  ++l  l+ + l+ ++++++      +v+v+D l+   ++
  CDO69449.1 336 -RQLQKLIVEPLQAARSEKKlpdnAcIVVVIDALDECTDS 374
                 .555555666664444433354442599999999966653 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.5   7.5e+02     193     217 ..     835     859 ..     827     871 .. 0.82
   2 ?   12.6   1.1   3.3e-05     0.049     303     350 ..     885     932 ..     877     933 .. 0.94
   3 ?   -2.3   0.0       1.1   1.6e+03     301     317 ..    1192    1208 ..    1183    1223 .. 0.72
   4 ?   -1.9   0.0      0.79   1.2e+03     330     350 ..    1327    1347 ..    1313    1348 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.5
  PALB2_WD40 193 llgttvlnniviWnlktGqllkkie 217
                 +++  ++n+i +W  +tG+ l+++e
  CDO69449.1 835 VVSGGDDNKIRLWKTQTGKELRTFE 859
                 7888999************999864 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.3e-05
  PALB2_WD40 303 aiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlvy 350
                 ++ +Wd++ g c     p s  +  lv Ws   + + +G  +G+v+v+
  CDO69449.1 885 TVKLWDVVTGACLRTWQPRSSGQLILVAWSLDGTLIASGCDEGKVFVW 932
                 899****************************9999999********98 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.1
  PALB2_WD40  301 sGaiavWdlllghctal 317 
                   G++ vWd   g+c   
  CDO69449.1 1192 DGTVCVWDSRTGRCIRT 1208
                  47888888888888544 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.79
  PALB2_WD40  330 rWsgtdsqllaGqkdGsvlvy 350 
                   +s+  s++laG+++G+ ++y
  CDO69449.1 1327 AFSEDCSRVLAGNEEGETFLY 1347
                  5788899************99 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.15   2.3e+02     224     257 ..     827     859 ..     803     872 .. 0.81
   2 ?    6.7   0.2    0.0016       2.4     229     255 ..     873     899 ..     844     904 .. 0.70
   3 ?    2.3   0.0     0.034        51     229     269 ..    1182    1217 ..    1162    1263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.15
                 .....TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 224 avveigqtylfalsrdgkLrvWnlltgkclatid 257
                 ++++ + +y+++   d+k+r+W ++tgk l+t++
  CDO69449.1 827 GFSQ-DGKYVVSGGDDNKIRLWKTQTGKELRTFE 859
                 5566.7778888888*************999964 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0016
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 +   +++ s+d+++++W++ tg cl+t
  CDO69449.1 873 TGREILSGSSDKTVKLWDVVTGACLRT 899
                 444467889****************98 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.034
                  TTTEEEEEETT-EEEEEETTTTEEEEE.EE--.-SSSTTS-- CS
      Nup160  229 gqtylfalsrdgkLrvWnlltgkclat.idllrdeeaqdess 269 
                  + +++++   dg++ vW+ +tg+c++t  + +      ++++
  CDO69449.1 1182 AGNFIASGGYDGTVCVWDSRTGRCIRTyAEQT------SCVK 1217
                  5678888888****************965544......3333 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   0.00013       0.2     166     209 ..     353     397 ..     334     404 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
  KAP_NTPase 166 ktLdalqkrlVvviDdLDrceteevlq.lleavkllfsl.kpvvfi 209
                 k+L + +  +VvviD+LD c+++ +++ +l+ + l  s   p +f+
  CDO69449.1 353 KKLPD-NACIVVVIDALDECTDSDAVStILKSLSLYISNlTPLKFV 397
                 44444.888***********99876651566555544433555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.39      20      49 ..     254     281 ..     247     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrv 49 
                 +  +++ AG+GK+t+ ++++e w++++  v
  CDO69449.1 254 ILWIHALAGAGKSTLAQTVAEWWDEDQ--V 281
                 77899******************9875..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.52
# Mc/sec: 8567.57
//
Query:       CDO69450.1  [L=357]
Description: hypothetical protein BN946_scf184817.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-15   55.9   3.2    1.4e-14   55.2   3.2    1.3  1  Abhydrolase_6    Alpha/beta hydrolase family
     0.0034   16.4   0.1     0.0055   15.6   0.1    1.3  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   3.2   1.6e-18   1.4e-14       1     218 [.      48     333 ..      48     335 .. 0.58

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.6e-18
                    EEEE--GC.....GC..HHHHHHHHCCT.......CEEEEE--TTST........S-GGCS--HHHCHHHHHHHCCTT.......TTSEEEEEETC CS
  Abhydrolase_6   1 vlllHGagssassWl..vapLaallaag.......vhvlapDlpGhG........rsdpppldledladlaalldelaa.....gggpvvlvGHSl 74 
                    ++llH+  s+++sWl  v +L +l           v+ +++D p+hG        r   +p   +  +++ ++++++ +      g  vv++GHS 
     CDO69450.1  48 LVLLHAIASHKESWLptVEHLFELQETIptnaftiVEAWSMDKPNHGhaavanqhRLIEDPRVISG-RQVGRAVQAFLKsgliaAGSTVVAIGHSA 142
                    79************656778844444445557779899*********5555544433556666666.8884444444444787788889******* PP

                    HHHHHHHHHHCC.......EE.EEES-..----TTTS----TTHHHHHHTT-C....CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH........ CS
  Abhydrolase_6  75 GGalalaaapla.....lvvg.vlldppptalpagllaaalelllallallrl....lawlsreplprlfladedadaawrarlarla........ 152
                    G+ ++ +a + +     + ++ +++dp p+++p  l+ a++e +  l+a +++    + w+sr +++++++a   ++ +wr+++ r++        
     CDO69450.1 143 GACIMVQATDDCavtelPFSSlIMVDP-PMMTPEILQKALAEGWPLLRAMEIAknrkDVWPSR-SAAKEWFA---KRFPWRRWDPRVLdlyvehal 233
                    ***999977777999965555788888.66677777555555555444433334446999987.55569999...777788888777733344333 PP

                    .HHCCHHCHTTCCHHTT-TTGC....................................EEECTT-CHHHHCHHCCCH..STTEEET..CE...SSS CS
  Abhydrolase_6 153 .allaglgllpaaawadlpvpl....................................lvlggeDplvprllerlla..qagarlp..vvlpgaGH 207
                     +       lp a ++dl + +                                     ++gg+ ++vp   +++ +   ag+r+   v ++++GH
     CDO69450.1 234 cD-------LPTASYPDLKEGVtlsisraqeingysghadahaalerlkvlcptipvhCIFGGQVDMVPLESQAAIVdeDAGRRMRsiVRIARSGH 322
                    30.......3444444444444322333333333222222222222212111222221022233223333333333334222333255******** PP

                    -HHHHSHHHHH CS
  Abhydrolase_6 208 lphleepdeva 218
                    l+ +e+p+++a
     CDO69450.1 323 LLVQEAPRDLA 333
                    99998998776 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.1e-07    0.0055      77     128 ..     120     171 ..      89     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.1e-07
  Chlorophyllase2  77 LesvlpeevepdlsklalsgHSrGgktafalalgkaktslkfsaligvdPva 128
                      ++  l++++ ++ s ++  gHS+G+ ++++ + + a t+l fs+li+vdP  
       CDO69450.1 120 VQAFLKSGLIAAGSTVVAIGHSAGACIMVQATDDCAVTELPFSSLIMVDPPM 171
                      67788899999999***********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2468.25
//
Query:       CDO69451.1  [L=707]
Description: Glycoside Hydrolase Family 92 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-144  481.5   0.7   3.4e-144  481.2   0.7    1.1  1  Glyco_hydro_92   Glycosyl hydrolase family 92
    1.2e-55  189.0   3.2      2e-55  188.3   3.2    1.4  1  Glyco_hydro_92N  Glycosyl hydrolase family 92 N-terminal doma


Domain annotation for each model (and alignments):
>> Glyco_hydro_92  Glycosyl hydrolase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.2   0.7  3.7e-148  3.4e-144       1     461 [.     238     682 ..     238     683 .. 0.94

  Alignments for each domain:
  == domain 1  score: 481.2 bits;  conditional E-value: 3.7e-148
                     HHHHHHHHHTT.T--HHHHHHHHHHHHHHHHTTEEEESS-HHHHHHHHHHHHHHTTSSEE--EE-TTE-TTTSSEEE.S--EESEEHHHHTTTHH CS
                     xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92   1 qArknleaEip.dldfekvraaareaWnekLskieveggtedqkttFYtalYhallapneysdvdgeYsglddkvhkegksYttfslWDtyRaqh 94 
                     qArknl++Eip ++++e++++++r+aW ekL++++veg+++++ ++FYt+++h+l++p e ++  + Ysg+ddkvh+ g sYt +s+WDt+Ra++
      CDO69451.1 238 QARKNLDKEIPdGTTLEETAEKTRSAWAEKLDRVKVEGASQEESEIFYTGIFHTLQYPYEQDEDGHYYSGYDDKVHE-GVSYTGYSIWDTFRAEW 331
                     8**********779*************************************************777799*****977.889************** PP

                     HHHHHH-HHHHHHHHHHHHHHHHHHSS--SEESSS.B---S-S-THHHHHHHHHHTT---S-HHHHHHHHHHHHHB-S.-TT......TBTTTH. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.....xxxxxx. RF
  Glyco_hydro_92  95 plltlldperasdmvrslldiykeggwlpdwrlsnsetavmgGsnadvvladayvkgirdfdvekayealvkdaeeep.eaad.....kerrgl. 182
                     +++ ll+per + mv+s+l++y eggwlp+w++   et++m+G++ad+++a+a++kg+++fd+e+ay+a+ kda++ p ++++      e+  l 
      CDO69451.1 332 AWQILLAPERINGMVQSMLQDYVEGGWLPMWKNIV-ETNIMVGTHADSLVAEAVAKGFKGFDLETAYAAVHKDATVPPeDDWTisyfdREQCMLn 425
                     *********************************99.***************************************99999999888643332223 PP

                     HHHHHHSS--T..TTTTHHHHHHHHHHHHHHHHHHHHHTT-HHH.HHHHTTGGGGG.GGEETTTTCE--B-TTS-B-SS--TT--.STTSSSS-H CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 183 esylklgYvpakedesesvsrtlEyaydDfaiaqlAkalgkkedaekylkrsknwr.nlfdpetgfmrprnadGtwaepfdpsedpeegftEgna 276
                      + l + ++p+     + v +t+   ydD+a++ lA+algk++da+ +++r+ +   ++f++ tgfm++rna+G+wa+     +d   g+tEg+ 
      CDO69451.1 426 MDGLLRIFIPK----LHLVLWTM-HVYDDYAVSVLASALGKDADAAFFRARAFSAPfTIFNNATGFMEARNANGSWAG-----QD--AGWTEGDM 508
                     44566678998....58999999.58**************************888779******************82.....33..579***** PP

                     HHHTT--TT-HHHHHHHHTSHHHHHHHHHHHS----TTGHHHHHHHTSS-TT-GGGTTGGGGGGGTT-HHHHHHHHHHHHHHSB-SSTT-BSSTT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 277 wqysffvphDvagLielmGGkeafvkrLdslfeeeekksedsaglsgqydhgNEpsfhtpylYnyagapwktqervreildelynntpdGlpGnd 371
                     w y+f v+hDv+ Li+  GG+++fv+ Ld++f+            +g+ dh+NEps+h+py Y++aga++k+qer+rei++ +ynn+ +Gl+Gn+
      CDO69451.1 509 WAYTFDVVHDVPALIARRGGNKSFVEFLDEHFN------------GGHNDHTNEPSHHIPYFYSLAGAASKSQERIREIAKGNYNNSVNGLSGNE 591
                     *********************************............99************************************************ PP

                     TSSTTHHHHHHHHHTEE-SSTTS-EEEE---SSSEEEEE-GGG.-EEEEE-TT-BTTB-EEEEEEETTEE---.EEEHHHHHT-EEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 372 DaGqmsawyvfsalGlYpvapgspeyllgsPlfekvtirleng.ktltieaknnsaenvyvqsvtlnGkplkk.wlthediakGgtLefelg 461
                     D+GqmsawyvfsalG+Ypv+p s+ey++g+P+f+kvti+l+n  + l+i+++++s++  y++svt+nG++l++ +lth+dia+Gg+++fe+ 
      CDO69451.1 592 DCGQMSAWYVFSALGFYPVDPVSTEYVIGTPFFDKVTIDLPNApRPLVITSPGASSK-PYIKSVTVNGRKLSTpILTHADIASGGQIHFEMA 682
                     ****************************************666378*****999975.5************8779***************96 PP

>> Glyco_hydro_92N  Glycosyl hydrolase family 92 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   3.2   2.3e-59     2e-55      14     237 .]       1     232 [.       1     232 [. 0.95

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 2.3e-59
  Glyco_hydro_92N  14 tfpgatlPfGmvklspdtrenwdsqagYeyddssitgFshthlsGtgggdlgdvslmPttgevkldpgkkkkdkeeyrsrfskedetaspgyYs 107
                      ++p++++Pf+m++++++tr+n+ s ++Y+y+d++i+gF+ th++++++g++g+  ++P++g+v+       + +e+++ +fs++det ++ yYs
       CDO69451.1   1 MIPSTAPPFAMTRWVAQTRQNYVSVTPYNYTDTKIHGFQGTHQPAIWMGESGQAIVTPGAGKVQ-------SIFEHRGMPFSHADETSTASYYS 87 
                      79************************************************************99.......5799******************* PP

  Glyco_hydro_92N 108 vtldd...ygikaelTateragllrftFpkgkeanilvdlsdsl..ssd.....kvsngsikv.vddreisGyrtsrg.fgl....agsykvYf 185
                      v +++    +i ae +at+r+g+lrftF+++ ++++lv++++++  +sd     ++ +gsi++ +  rei+G + +r+ f      a+s+ +Yf
       CDO69451.1  88 VVMEAvegGKIYAEQSATSRVGHLRFTFENTRTPYVLVEATRASvlGSDdptnvTYPHGSIHIdPVHREITGRNPERQdFIIgpnpAPSFAGYF 181
                      ***776669*******************************88765443478888************************888899********** PP

  Glyco_hydro_92N 186 varfskpfksfgvwkggevtegaksasgkelgayvsFdtkegetvevrvGiS 237
                      +arf+ pf+ fgv+++g+v+e a++ sg  l+++++F++  +++v+vr+G+S
       CDO69451.1 182 CARFDVPFEGFGVAQNGTVKEHAADGSGALLSGFARFAP-GTKRVNVRIGVS 232
                      ***************************************.***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5238.41
//
Query:       CDO69452.1  [L=616]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-55  186.1   0.0    1.3e-54  185.6   0.0    1.1  1  GMC_oxred_N    GMC oxidoreductase
    2.5e-34  118.8   0.0    4.1e-34  118.2   0.0    1.4  1  GMC_oxred_C    GMC oxidoreductase
     0.0043   17.3   0.1      0.011   16.0   0.1    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.022   13.8   0.0       0.04   13.0   0.0    1.3  1  Lycopene_cycl  Lycopene cyclase protein
       0.15   11.2   0.1         17    4.5   0.1    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.21   10.6   1.2       0.54    9.3   0.5    1.8  2  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.0   4.2e-58   1.3e-54       6     295 ..       7     336 ..       3     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 4.2e-58
  GMC_oxred_N   6 eggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidk.klntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaadlde 101
                  +ggG+ag vvA+RLsedp t+v v+eag++  n    ++  ++++ + +   ++ + t+p+ +l++ +l  p+Gk+lGG+s  N+ ++ R+++  +d 
   CDO69452.1   7 AGGGTAGLVVATRLSEDPGTTVAVIEAGPHHVNEPlVDTPEFFSRALGNpAFDWRFVTTPQVNLDNAVLPQPRGKMLGGSSGLNFIVWDRASQREYDA 104
                  59*****************************9999766666666655551679********************************************* PP

  GMC_oxred_N 102 Weeeaglegwssdevlpafkkvetaqale.................sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcGvcll 182
                  We+  g++gw+++ +lp+fkk+et   ++                   +hg  g+++ + + ++ + ++   ++  ++ G+p++ d   ++ +Gv ++
   CDO69452.1 105 WEQL-GATGWNWNSLLPYFKKSETVA-PQlqtdifpeasqpseasfDTFHGRSGPVQPSYNVIYSNVTVP-YVETINSIGVPTNSDPYTGNATGVYNT 199
                  ***9.******************554.445799**********99999*******999888888887775.5799*******9999999999999887 PP

  GMC_oxred_N 183 gv....tcrtgarqstarawLrpalerpnleiltgakaekiil..................egrkkravGVeasdkkgt.vkrlvvaakevvvaaGal 257
                  +v    + + g+r+ +a++++     rpn  +  + +a+ki +                    ++ ra +V++   + + ++ ++ a+kev+v++Ga+
   CDO69452.1 200 EVaidrVKNLGKRSYAASTYFNISSDRPNMSVFLSSQATKINFdlgdsivsllssllssflGLETMRASSVDVVAVGDNgTTGRILARKEVIVSGGAF 297
                  76422256789******************************99******************446********99988887899*************** PP

  GMC_oxred_N 258 nsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknLqdHp 295
                   +P+lL++SG+G+ + L+e g+++ +dlp vG+nLqdHp
   CDO69452.1 298 GTPHLLELSGIGNPDILREAGIQTLIDLPaVGENLQDHP 336
                  **************************************9 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   1.4e-37   4.1e-34       1     144 []     467     605 ..     467     605 .. 0.94

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.4e-37
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-S CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGa 98 
                  P+srG+v+++ sdp + plidp yl+++ d++ +++++k arki+++++      +  +   ++++ a+v++d+++ +f k+  +t++Hp+Gt++M +
   CDO69452.1 467 PFSRGSVHINTSDPLASPLIDPSYLDNDVDRQLALQGVKLARKITQTKP-----LGPLVI-SDHSPGANVTTDADWIAFTKNGLTTTYHPIGTAAMLP 558
                  89**********************************************6.....333333.3677888****************************** PP

                  TCGCBSB-.TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  99 dpkdsVVD.sdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  ++  +VVD  +l+v+g++nLr+vDaS++P  +  +p++t++a+Ae+a
   CDO69452.1 559 RELGGVVDpLTLKVYGTENLRIVDASLMPMLIATHPQSTVYAIAERA 605
                  ********88***********************************97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.6e-06     0.011       3      30 ..       8      36 ..       7      37 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
                   --SHHHHHHHHHHHCC.TEEEEEE-SSSS CS
  NAD_binding_8  3 GaGlsGlvaAylLaka.gfdvlllekrdr 30
                   G+G +Glv A +L+++ g  v ++e++++
     CDO69452.1  8 GGGTAGLVVATRLSEDpGTTVAVIEAGPH 36
                   9**************99*********987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05      0.04       6      38 ..       8      39 ..       6      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
  Lycopene_cycl  6 GaGpAglslAarlteakpglkvvlieaspsllf 38
                   G+G Agl +A rl ++ pg  v +iea+p+ + 
     CDO69452.1  8 GGGTAGLVVATRL-SEDPGTTVAVIEAGPHHVN 39
                   9************.999************9765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0058        17       4      34 ..       8      39 ..       7      43 .. 0.91
   2 ?    4.3   0.0    0.0067        20     119     147 ..     281     309 ..     265     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0058
  Pyr_redox_3  4 GaGPaGlaaaielkkagledylilEkg.nign 34
                 G+G aGl +a+ l +   +++ ++E g +++n
   CDO69452.1  8 GGGTAGLVVATRLSEDPGTTVAVIEAGpHHVN 39
                 9***************999*******966665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0067
  Pyr_redox_3 119 sketyeAkkviiAtGefdkPnklnipGee 147
                  + + +  k+vi++ G f+ P++l+ +G  
   CDO69452.1 281 TGRILARKEVIVSGGAFGTPHLLELSGIG 309
                  455566689****************9986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00018      0.54       6      32 ..       8      35 ..       7      38 .. 0.89
   2 ?   -1.0   0.0      0.24   7.3e+02     177     204 ..     273     299 ..     247     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00018
                   --SHHHHHHHHHHHH.TTT-EEEEESSS CS
  FAD_binding_2  6 GsGlAGLaAAleaae.aGlkvavvekeq 32
                   G+G AGL+ A++++e  G +vav+e ++
     CDO69452.1  8 GGGTAGLVVATRLSEdPGTTVAVIEAGP 35
                   9**************6677******987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.24
                    EEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 177 avvenpesgrevrirak.avvlatgGfgr 204
                    + v   ++g++ ri a+  v++  g+fg 
     CDO69452.1 273 VAVG--DNGTTGRILARkEVIVSGGAFGT 299
                    3333..899999*****9*******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4137.81
//
Query:       CDO69453.1  [L=774]
Description: Glycoside Hydrolase Family 92 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-141  472.4   3.1   1.9e-141  472.2   3.1    1.1  1  Glyco_hydro_92   Glycosyl hydrolase family 92
    1.2e-54  185.8   5.2      2e-54  185.0   5.2    1.4  1  Glyco_hydro_92N  Glycosyl hydrolase family 92 N-terminal doma
  ------ inclusion threshold ------
       0.54   10.0   3.2       0.54   10.0   1.2    2.1  2  Prenyltrans      Prenyltransferase and squalene oxidase repea


Domain annotation for each model (and alignments):
>> Glyco_hydro_92  Glycosyl hydrolase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.2   3.1  3.2e-145  1.9e-141       1     461 [.     297     748 ..     297     749 .. 0.95

  Alignments for each domain:
  == domain 1  score: 472.2 bits;  conditional E-value: 3.2e-145
                     HHHHHHHHHTT.T--HHHHHHHHHHHHHHHHTTEEEESS-HHHHHHHHHHHHHHTTSSEE--EE-TTE-TTTSSEEE.S--EESEEHHHHTTTHH CS
                     xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92   1 qArknleaEip.dldfekvraaareaWnekLskieveggtedqkttFYtalYhallapneysdvdgeYsglddkvhkegksYttfslWDtyRaqh 94 
                     qAr+n+++Eip ++++e++++++r+aW ekL++i+veg+++++ ++FYt+++h+l++p e ++  + Ysg+dd+vh+ g+sYt +s+WDt+Ra++
      CDO69453.1 297 QARRNVDKEIPdGTTIEETAEKTRAAWAEKLDRIKVEGASHEDAEVFYTGIFHTLQYPYEQDEDGHYYSGYDDAVHA-GSSYTGYSIWDTFRAEW 390
                     8**********779*************************************************666799*****977.889************** PP

                     HHHHHH-HHHHHHHHHHHHHHHHHHSS--SEESSS.B---S-S-THHHHHHHHHHTT---S-HHHHHHHHHHHHHB-S.-TT............. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx............ RF
  Glyco_hydro_92  95 plltlldperasdmvrslldiykeggwlpdwrlsnsetavmgGsnadvvladayvkgirdfdvekayealvkdaeeep.eaad............ 176
                     +++ ll+per s mv+s+l++ykeggwlp+w++   et++m+G++ad+++a+a++kg+rdfd+++ay+a+ kda++ p ++++            
      CDO69453.1 391 AWQILLAPERISGMVQSMLQDYKEGGWLPMWKNIV-ETNIMVGTHADSLIAEAVAKGFRDFDLDTAYNAVHKDATVPPqDDWTisysdrqqgvgy 484
                     *********************************99.***************************************99999999****99999998 PP

                     TBTTTH.HHHHHHSS--T..T.TTTHHHHHHHHHHHHHHHHHHHHHTT-HHH.HHHHTTGGGGG.GGEETTTTCE--B-TTS-B-SS--TT--.S CS
                     xxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 177 kerrgl.esylklgYvpaked.esesvsrtlEyaydDfaiaqlAkalgkkedaekylkrsknwr.nlfdpetgfmrprnadGtwaepfdpsedpe 268
                     + r+gl + y ++g+v++  d +se++srtl+ya+     + +A+a gk++da+ +++r+ n   ++f++ tgfm++r a+G+wa+     +d  
      CDO69453.1 485 EVRAGLsSVYAERGWVAS--DlHSEAASRTLDYAF-----SVVASASGKNADAAFFRARAWNAPfTIFNNATGFMEARVANGSWAG-----QD-- 565
                     888886355********9..769********8876.....789*****************999889******************82.....33.. PP

                     TTSSSS-HHHHTT--TT-HHHHHHHHTSHHHHHHHHHHHS----TTGHHHHHHHTSS-TT-GGGTTGGGGGGGTT-HHHHHHHHHHHHHHSB-SS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 269 egftEgnawqysffvphDvagLielmGGkeafvkrLdslfeeeekksedsaglsgqydhgNEpsfhtpylYnyagapwktqervreildelynnt 363
                      g+tEg++w y+f v+hD++gLie+ GG+++f++ Ld++f+            +g+ dh NEps+h+pylY++aga+ k+qer+re+++ +ynn+
      CDO69453.1 566 AGWTEGDEWAYTFDVVHDIPGLIEHKGGNASFAEFLDQHFN------------GGHNDHRNEPSHHIPYLYSLAGAATKSQERIREVAKVKYNNS 648
                     579**************************************............99**************************************** PP

                     TT-BSSTTTSSTTHHHHHHHHHTEE-SSTTS-EEEE--.-SSSEEEEE-GGG-E.EEEE-TT-BTTB-EEEEEEETTEE---.EEEHHHHHT-EE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Glyco_hydro_92 364 pdGlpGndDaGqmsawyvfsalGlYpvapgspeyllgs.Plfekvtirlengkt.ltieaknnsaenvyvqsvtlnGkplkk.wlthediakGgt 455
                      + l+Gn+D+Gqmsawy+fsa G+Ypv+p s++y++g+ P+fek+ti+l+n k+ l+i+++++ + + yv+svt+nG+ l++ +l+h+dia+Gg+
      CDO69453.1 649 INDLSGNEDCGQMSAWYIFSAFGFYPVNPVSATYVIGTrPFFEKITIDLPNAKRpLVITSPGAPN-KPYVRSVTVNGRMLDSpVLQHADIASGGS 742
                     ************************************855**********7776549999998876.56************9989*********** PP

                     EEEEEE CS
                     xxxxxx RF
  Glyco_hydro_92 456 Lefelg 461
                     ++fe++
      CDO69453.1 743 IHFEMS 748
                     *****8 PP

>> Glyco_hydro_92N  Glycosyl hydrolase family 92 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   5.2   3.3e-58     2e-54       1     237 []      40     291 ..      40     291 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.0 bits;  conditional E-value: 3.3e-58
  Glyco_hydro_92N   1 yVnp.liGTggg......ghtfpgatlPfGmvklspdtrenwdsqagYeyddssitgFshthlsGtgggdlgdvslmPttgevkldpgkkkkdk 87 
                      yVnp liG+gg       g+++p++++Pf+m++++++tr+n+ s + Y+y++s ++gF+ th++++++g++g   ++P++gev+       + +
       CDO69453.1  40 YVNPrLIGNGGYssgggsGGMVPSTAPPFAMTRWVAQTRQNYVSVTLYNYTNSVVYGFQGTHQPAIWMGESGPAVVVPGAGEVR-------SVF 126
                      899967999888999999****************************************************************99.......569 PP

  Glyco_hydro_92N  88 eeyrsrfskedetaspgyYsvtldd...ygikaelTateragllrftFpkgkeanilvdlsdsl..ssd......kvsngsikv.vddreisGy 169
                      e+++ +fs+++e ++p yYsv +++    +i ae +at+r+g+lrf+F+++k++++lv+++++   + +      ++  gsi + + +rei+G+
       CDO69453.1 127 EQRGMSFSHAEEITTPSYYSVIMNAsegGQIYAEQSATSRVGHLRFRFENTKTPYVLVEATRAFvlG-SadptnvTYPRGSILIdPRRREITGH 219
                      9**********************8766689******************************8877433.1478888******************* PP

  Glyco_hydro_92N 170 rtsrg.fgl....agsykvYfvarfskpfksfgvwkggevtegaksasgkelgayvsFdtkegetvevrvGiS 237
                      + +r+ f      a+++ +Y++arf++pf  fg++++g++te++++ +g  l+++++F++  ++tv+vrvG+S
       CDO69453.1 220 NPERQdFIIgpnaAPGFAGYYCARFDAPFGGFGIAQNGTITENETHGDGAVLSGFARFAP-GTKTVNVRVGVS 291
                      *****888799*9***********************************************.***********9 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   9.1e-05      0.54      14      40 ..     357     383 ..     355     383 .. 0.95
   2 ?   -2.9   0.0         1   6.1e+03      14      20 ..     410     417 ..     408     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.1e-05
                  SHTTS-BBSSTTSSBBHHHHHHHHHHH CS
  Prenyltrans  14 QnedGGwggrpgsesdtyytywalaaL 40 
                  Q+edG++++ ++  ++++ +y++++++
   CDO69453.1 357 QDEDGHYYSGYDDAVHAGSSYTGYSIW 383
                  99**********************998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
                  SH.TTS-B CS
  Prenyltrans  14 Qn.edGGw 20 
                  Q+ ++GGw
   CDO69453.1 410 QDyKEGGW 417
                  88899*** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5356.39
//
Query:       CDO69454.1  [L=759]
Description: Glycoside Hydrolase Family 3 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-55  186.2   0.0    1.3e-54  185.8   0.0    1.1  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.6e-43  149.0   0.0    2.7e-42  145.0   0.0    2.4  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    2.2e-23   82.1   1.8    4.3e-23   81.2   1.8    1.5  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   2.1e-58   1.3e-54       1     318 [.       2     333 ..       2     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 2.1e-58
                    -HHHHHHHTEE-B-SE...........-S--HHHHHHHHHH--SEEE--GGGTSSHHHHH.HHHHHHHHH-SS....S--EEEE---BTTB---SS CS
  Glyco_hydro_3   1 tldekigqLlvvevse...........ekkseeaaellkkyqvGgiilfaenledtkqle.elieaarqaseksrlgiPlllavDqegGlvqrlge 84 
                    tl+ek++q+ + ++++           + ++++  e +  ++ G+i  +   l ++ +    ++ ++r  +e++ lgiP+++ ++ ++G     ++
     CDO69454.1   2 TLEEKVAQIIQGDMNGwmdftdplddtKTFNQTGLEQMMSQKSGSIWGG--YLTPWDKFVfGVTVGQRYLMENTTLGIPAIIQSEGLHGFT---NN 92 
                    79*********99888********9998899999999999999999875..88898886537999999**********************9...55 PP

                    S---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT...........T-EEEE CS
  Glyco_hydro_3  85 gtlfPsalalaatssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga...........gvaatv 169
                    gt  Ps+++laa++++dl+++++  ia e+  lg+++ faPv+d++r+ r+g+ ++ F+edp+l++ +++a+v Glq+             +aat 
     CDO69454.1  93 GTTWPSPIGLAASFDPDLLRQAAARIADEAEGLGVSQIFAPVLDLSRELRWGRVEENFGEDPFLTGEMGTAYVSGLQSGrrrnasssaiaRMAATC 188
                    699**************************************************************************999**************** PP

                    EEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS CS
  Glyco_hydro_3 170 KHFpghGdgavdshkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrg 265
                    KHF++   g+ ++++++++v+  e+elr+ +l pf+ a  + +  +Mta   +++ dg pa ++k lltd+LR+e+G++  v +Da ++  +++ +
     CDO69454.1 189 KHFAAF--GSPQGGLNIAQVTGGERELRSAYLRPFNRACVESLA-IMTA---YSSYDGIPAIANKHLLTDILRNEWGYKYWVTTDAGSVDLLITTH 278
                    ******..99****************************966665.****...**************************************988777 PP

                    -....HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 266 g....keeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                    g     e a++ a++ G+  ++   ++t  + +l ++vk+G +  + +de v+  lr
     CDO69454.1 279 GtcdtRECAAKTAIENGLSGEMGGGSYT--YLTLPDQVKAGTVDIKFVDETVKAMLR 333
                    768877778999***********99998..99*************999999987765 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.0   4.6e-46   2.7e-42       1     204 []     371     642 ..     371     642 .. 0.89

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 4.6e-46
                      -EEEEEGSS--S-S-STEEEEEESGGGSSS-SS-BSSS----S---HHHHHHHHHHH...................-HHHHHHHHHHHTSEEEE CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnadetlklGggsgtvtvsylvsplegirerles.................eegideaveaakeaDvavv 77 
                      iVLL+N++n+LPL+k++ ++a+iGp+ d ++  G++    +++  vspl g ++ l +                  +gi +a +aak++D+a+v
       CDO69454.1 371 IVLLENKENTLPLSKSIGSVALIGPQVD-RVSFGDYVFFNASNNGVSPLAGFTQLLLNtslkinyaegcklwsndVSGIPAAIAAAKQSDAAIV 463
                      8***************************.***********9999************889***************989***************** PP

                      EEEES................SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG................--TTT.......GTTTE CS
                      xxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx.......xxxxx RF
  Glyco_hydro_3_C  78 vvgedpei.............egEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpv................avepw.......keenv 135
                      +vg+++ +             +gE  D +dl l +aq +l++a+++a+k+++vv++sg+pv                +            ++++
       CDO69454.1 464 MVGTWS-LdqtllwtpgtnatTGEHADLSDLGLVGAQLQLVQAIKDAGKPTIVVFVSGKPVaepwiqerergnlsgtD---CmlivalaLSTDA 553
                      *****4.4599**************************************************66666666555555550...05555566788** PP

                      EEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG...............................S.-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.................xx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 136 kAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpddyyeek...dt.................yk.fegtplYpeGlglsY 204
                      +A+++ ++pG+ gG a+a+++fGd nPsGkLpv+fp+s++ +p+ +y++    ++                 y   +  p++++G+glsY
       CDO69454.1 554 DAVVQQFYPGELGGLALAEIIFGDLNPSGKLPVSFPRSVGTTPV-FYNYLkgsRPidpgqilddgtlvfghqYVlDTPVPIWSFGHGLSY 642
                      ******************************************99.666554442266788889999988888666777777********9 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   1.8   7.2e-27   4.3e-23       1      70 [.     679     747 ..     679     748 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 7.2e-27
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgts 70 
                 evvq+Y++d  ssv +p+++L+gF+kv++++G sk+vt+++++++l vw  + +kw vepG++ v vgts
  CDO69454.1 679 EVVQVYITDVVSSVVTPNQQLVGFQKVDIPAGTSKRVTIRVNSTQLEVWTLD-NKWAVEPGQFAVKVGTS 747
                 8***************************************************.8***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.56
# Mc/sec: 4117.17
//
Query:       CDO69455.1  [L=404]
Description: hypothetical protein BN946_scf184817.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-05   23.6   0.1    7.3e-05   22.6   0.1    1.6  1  SH3_9       Variant SH3 domain
    0.00075   19.1   0.0     0.0018   17.9   0.0    1.7  1  SH3_1       SH3 domain
  ------ inclusion threshold ------
       0.04   13.6   0.0      0.075   12.7   0.0    1.5  1  SH3_2       Variant SH3 domain
       0.97    9.4   3.8        1.2    9.0   3.8    1.1  1  TFIIA       Transcription factor IIA, alpha/beta subunit
        1.3    8.0   3.7        2.6    7.0   3.7    1.4  1  DUF4698     Domain of unknown function (DUF4698)


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1     2e-08   7.3e-05       1      49 []     349     399 ..     349     399 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2e-08
       SH3_9   1 AlypyepreddeLsLqrGDvitvi.eesedgWlegsl.tGrtGlvPanyve 49 
                 Aly++ep  ++e+ L++ ++++v  +    gW  +++ +G + lvP++y+e
  CDO69455.1 349 ALYAFEPEGTAEMALEEEQIVRVVgRGGGVGWAVVEKeGGGHALVPESYLE 399
                 8***********************544789******9899*********97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.9e-07    0.0018       1      46 [.     348     393 ..     348     395 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.9e-07
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGli 46 
                 +AlY +e+e + E+ +++  ++ v+ +  + gW  ++  g+g   l+
  CDO69455.1 348 KALYAFEPEGTAEMALEEEQIVRVVGRGGGvGWAVVEKEGGG-HALV 393
                 7*************************************9975.5555 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05     0.075       2      55 ..     347     399 ..     346     401 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslve 55 
                 ++a+  +++e + e+ +++ ++++v+  g+ +  gw  +e+ gG   l+P s++e
  CDO69455.1 347 YKALYAFEPEGTAEMALEEEQIVRVV--GRGGGVGWAVVEKeGGGHALVPESYLE 399
                 8899999*******************..656666777778897777788888887 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.8   0.00034       1.2      80     221 ..      63     240 ..      25     309 .. 0.38

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00034
       TFIIA  80 sqapastsqslpslvipagksvqslt.anssaataatfslpakleppv..qipagvtlqtasg..............qlykvnv...........qasg 150
                  +a+ + + ++p+++i+  ++++  t +  s++ ++t++ pa+ +p+   q+ +++t+ t+                  ++++             +++
  CDO69455.1  63 MSAQDEPAPTMPAALINGDSTPPTATvTTPSPSVSSTLTSPATPTPSSmfQVKTSTTQITVPDpppdsdshisltasA-LTTQNrdsltssrpapPSPA 160
                 222333333444444444444444443333333333334343333322001111222222222222222222111110.11111111112222344444 PP

       TFIIA 151 aqqiaaqplqqvvqq.sqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqe............................ 220
                 a+++a+++l  + ++ +++ +++ss+ +++ +++   a + +  +++++ +                   +                            
  CDO69455.1 161 ASRRASAALSRRSSTaRSNRQSKSSLLQVSHEPE---ASSSSAATMTPSSE-------------------Qprrrsfvfkirdyaydpsderhigcgpd 237
                 5555555554443322222222222222222211...11111111111111...................01111222222222233333345555554 PP

       TFIIA 221 ..e 221
                   +
  CDO69455.1 238 vpR 240
                 432 PP

>> DUF4698  Domain of unknown function (DUF4698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.7   0.00073       2.6     169     225 ..     162     219 ..     156     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00073
     DUF4698 169 tkkakipvlrktskklsrkgsklslsrvsggsspqssvv.Slnpgsdevalssaltqv 225
                 +++a++ ++r+ s + s+++sk sl +vs+   + ss++  ++p+s+++   s + ++
  CDO69455.1 162 SRRASAALSRRSSTARSNRQSKSSLLQVSHEPEASSSSAaTMTPSSEQPRRRSFVFKI 219
                 56778889999999****************998888777699*******999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.51
# Mc/sec: 2363.80
//
Query:       CDO69456.1  [L=510]
Description: hypothetical protein BN946_scf184817.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-21   76.4  30.2      2e-21   76.3  19.3    2.3  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   2.0   0.00016       2.9       5      49 ..      84     128 ..      80     131 .. 0.84
   2 !   76.3  19.3   1.1e-25     2e-21     106     353 .]     147     457 ..     144     457 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00016
       MFS_1   5 aflsalarsilgpalplalaedlg.ispseigllltlyalgaavas 49 
                 afls l++s+ +pa+   +a+++g  ++++i + +++y l+++++s
  CDO69456.1  84 AFLSPLSSSMMAPAAN-QIAHQFGvTDKTVIAMFTSIYVLAYGALS 128
                 89**************.8******5555667778888*****9987 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 1.1e-25
       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivslla.fvlfllll............................... 172
                 g+ ++ d++ +++rg+ai+++s++  lG+++gp+ g+++a+   Wr+vf+   i+++++ +v +l++l                               
  CDO69456.1 147 GGGVLGDIWLPSQRGQAIAIFSLAPLLGPVIGPACGAWIAEKSDWRWVFWSTSIFCVFVqGV-GLFYLqesvlfyfnavlisvqltdafgnisayapvl 244
                 667888999999***********************************************644.4466689999999***************99999998 PP

       MFS_1 173 peepperkrkspkeee.............kgtgpaplvpawkallkdpvlw......illialllfffgfsg...lltllplylqevlglsglllagll 249
                 +e++ +r rk+ ++ e                 ++ ++++ ++ l +p+ +      i ++a++l f ++ +   +lt+lp + q+v+    + +ag+ 
  CDO69456.1 245 LERRAARIRKTMRDSEkgrvqevktvfdgP---NRRWRNLVQKALVRPFALsiyepiIQVLAAFLSF-VYGTlylFLTTLPAIYQDVYRER-VGIAGFH 338
                 444444444444444355555555553332...3333333334444443323446553333333332.4444446888888867*******.99***** PP

       MFS_1 250 lallalvgailallagrlsdr............lgrrrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappe 332
                 + +l++++ ++a + gr++d              +++ rl  ++++++l+ +gl+l+++t  + ++++    + +++G+g+ + f s+++++ d + + 
  CDO69456.1 339 YFALGIGMTAAAQINGRFMDWsykrlvarygqqGKPEYRLPTMVPGAILLPMGLLLAGWTARPDVHWIvpdiGTAIVGMGMILLFQSIQTYVIDAF-TL 436
                 ********999*********9988887776665555************************88888888899999**********************.58 PP

       MFS_1 333 eagtasglfntagslggalgp 353
                 +a++a+++  +++sl+g+ +p
  CDO69456.1 437 HAASALAALAFFRSLAGFSFP 457
                 9999*************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 3121.66
//
Query:       CDO69457.1  [L=402]
Description: hypothetical protein BN946_scf184817.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 2477.60
//
Query:       CDO69458.1  [L=360]
Description: Carbohydrate-Binding Module Family 1 / Glycoside Hydrolase Family 10 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-91  304.7   0.0    8.7e-91  304.4   0.0    1.1  1  Glyco_hydro_10  Glycosyl hydrolase family 10
    6.1e-08   32.5   3.7    6.1e-08   32.5   3.7    1.9  2  CBM_1           Fungal cellulose binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.4   0.0   9.7e-95   8.7e-91      41     315 ..     105     357 ..      87     358 .. 0.95

  Alignments for each domain:
  == domain 1  score: 304.4 bits;  conditional E-value: 9.7e-95
                     SSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTS CS
  Glyco_hydro_10  41 eNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkkengskaeeallkrlenhiktvverykgkiyawDVVNEavddng 135
                      N+     + ps+g+ftf+ ad+lv++a++n++ +r HtLvWhsqlP+wv+  n    + +l+++++nhi+tv++rykgk+ +wDVVNE+++++g
      CDO69458.1 105 SNAQNSAVTLPSRGQFTFSGADALVNYATQNGLLIRAHTLVWHSQLPSWVSAIN--DRA-TLTSVIQNHISTVAGRYKGKVRSWDVVNEIFNEDG 196
                     5777778899******************************************74..333.6*********************************7 PP

                     CSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTSTSHHHHHHHHHHHHHHHTT--.--EEEE--EEETTSCHHHHHHHHHHHHHTTT CS
  Glyco_hydro_10 136 gslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieeanakrkavvelvkelkekgvp.idgvGiQsHlsvdspsiseieaalkklaalg 229
                      ++r+sv+y++lG+d++ +AF+aAr+adp+akLy+NDYn+++ nak ++vv+lvk+++  g+  idg+G Q+Hl+++ +    ++aal++la+ g
      CDO69458.1 197 -TFRSSVFYNVLGQDFVTIAFQAARAADPTAKLYINDYNLDSVNAKVNGVVNLVKKVNGAGTQlIDGIGTQAHLNAGGA--GGVQAALQQLATAG 288
                     .9**********************************************************99879***********998..9************* PP

                     SEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGGGSTTHHHSTTEC--SSB-TTS-B-HHHHHHHH CS
  Glyco_hydro_10 230 levaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDkysWlsglkkkeeapllfdsnyqpkpayeavvd 315
                     +evaitELDi  +             ++y ++vka+l+v+ ++ ++t Wgv+D +sW+++     ++pllfd+ny+pkpay+a+++
      CDO69458.1 289 VEVAITELDIVGA-----------APNDYVTVVKACLAVP-SCVSITSWGVRDPDSWRAS-----SNPLLFDANYNPKPAYTAIIQ 357
                     ***********94...........4679************.******************9.....9*****************987 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   3.7   6.8e-12   6.1e-08       7      29 .]      21      43 ..      20      43 .. 0.98
   2 ?   -3.3   0.2         1   9.1e+03      16      25 ..     313     322 ..     311     325 .. 0.64

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 6.8e-12
       CBM_1  7 GigWtGpTtCvsgatCtyqNeyY 29
                Gig+tG+T+C++g++C+y N++Y
  CDO69458.1 21 GIGYTGSTVCDAGSVCVYENDWY 43
                9********************** PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1
       CBM_1  16 CvsgatCtyq 25 
                 C ++  C++ 
  CDO69458.1 313 CLAVPSCVSI 322
                 7777788875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 2193.87
//
Query:       CDO69459.1  [L=551]
Description: hypothetical protein BN946_scf184817.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-133  444.3   0.0   7.1e-133  442.9   0.0    1.6  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    9.5e-18   64.4   1.1    3.4e-09   37.0   0.0    3.1  3  CBS           CBS domain
    3.1e-09   36.3   7.8    8.4e-09   34.9   7.8    1.8  1  FMN_dh        FMN-dependent dehydrogenase
    8.9e-05   22.0  13.5     0.0048   16.3  10.7    2.6  2  NMO           Nitronate monooxygenase
    0.00016   21.1   1.1    0.00044   19.6   1.1    1.7  1  ThiG          Thiazole biosynthesis protein ThiG
     0.0003   20.3   5.3    0.00073   19.1   1.0    2.6  3  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
       0.03   13.7   3.3      0.076   12.4   0.2    2.6  3  HK            Hydroxyethylthiazole kinase family
       0.03   13.7   0.5       0.59    9.5   0.1    2.8  3  Aldolase      KDPG and KHG aldolase
      0.073   13.1   0.0       0.13   12.3   0.0    1.3  1  YpsA          YspA SLOG family
       0.22   10.6   2.3        2.2    7.3   0.2    2.2  2  Dus           Dihydrouridine synthase (Dus)
       0.23   10.5   4.5       0.68    9.0   3.2    2.0  2  Glu_synthase  Conserved region in glutamate synthase
       0.26   10.7   1.5        3.3    7.1   0.3    2.3  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.9   0.0  4.8e-136  7.1e-133       1     345 []      40     538 ..      40     538 .. 0.98

  Alignments for each domain:
  == domain 1  score: 442.9 bits;  conditional E-value: 4.8e-136
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 glt++d+ll+p+k++++++ev +++++t++++l++P++s++mdtvtesemAia+a  Ggigvih+n+ + +qa++v++vkr+                 
  CDO69459.1  40 GLTYNDFLLLPGKIDFAAQEVVTESRITRNVTLKTPFMSSPMDTVTESEMAIAMALLGGIGVIHHNQPAAAQAAMVRAVKRHengfitdpvvlsptntv 138
                 79************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  CDO69459.1 139 edvldvkerlgfagipitddgrlggklvgivtnrdiqfrapttplsevmttelvtapegitlqeandilrdskkgklpivnkdgrlvsllarsdllknk 237
                 *************************************************************************************************** PP

                 ..TTSXBX.TTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-ST CS
                 ..xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ..pnaakd.ekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGs 178
                   p a+k  e+++l+ +aa+g++  + er++ lveag+d++v+ds++g+s +++e++++ik++++++eviaGnv+t+e+a++Li+agad+++vG+G+Gs
  CDO69459.1 238 tyPLASKRpESKQLYAAAAIGTRPADRERLALLVEAGLDIVVLDSSQGNSIYQIEMIRWIKQTYPKLEVIAGNVVTREQAASLIAAGADGLRVGMGSGS 336
                 **888876599**************************************************************************************** PP

                 TBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH...... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
       IMPDH 179 iCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkk...... 271
                 iC+t++v++vG+pq+tAv++vae+a+k+gvpviaDGGi + g+ivkAla+Ga avm+G llagt+E+pge++++eg+++K+yrGmgsl+am++      
  CDO69459.1 337 ICITQEVMAVGRPQATAVYAVAEFASKFGVPVIADGGIGNVGHIVKALALGAGAVMMGGLLAGTTEAPGEYFWHEGKRVKAYRGMGSLEAMEQgkpvpp 435
                 *******************************************************************************************77899*** PP

                 .......................-SS-TTS-...--SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHH.....H-EEEEE-HHHHHH CS
                 .......................xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx RF
       IMPDH 272 .......................gskdryfqk.keklvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelke.....kakfvritaaglke 341
                                         +++ryf++ ++  v++Gv+g v++kgsv++++ +l+ gl+++++++G+++++el+e     k++f+ +ta+++ e
  CDO69459.1 436 saqrggkgpgssqppakntthenAATSRYFSEsSAVKVAQGVSGDVQDKGSVHAFIPYLYVGLQHSFQDIGVRNVKELQEsvragKTRFELRTASAQIE 534
                 *********9999999988765447779*9853669********************************************999999************* PP

                 HS-- CS
                 xxxx RF
       IMPDH 342 shvH 345
                 ++vH
  CDO69459.1 535 GGVH 538
                 ***9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.2   1.8e-08   2.7e-05       7      51 ..     127     174 ..     115     177 .. 0.85
   2 !   37.0   0.0   2.3e-12   3.4e-09       2      53 ..     184     235 ..     183     237 .. 0.95
   3 ?   -2.0   0.0       3.3     5e+03      16      52 ..     351     381 ..     348     385 .. 0.56

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.8e-08
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTB....EEEEEEHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgk....lvGivtlrDl 51 
                 +d+v+++p+ t+e++l+  ++ g+ ++P++ +dg+    lvGivt rD+
  CDO69459.1 127 TDPVVLSPTNTVEDVLDVKERLGFAGIPIT-DDGRlggkLVGIVTNRDI 174
                 7999************997676699*****.58855555*********9 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2.3e-12
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 +++mt+++vt+p+  tl ea +++r+++ + lP+V++dg+lv ++ ++Dll+
  CDO69459.1 184 SEVMTTELVTAPEGITLQEANDILRDSKKGKLPIVNKDGRLVSLLARSDLLK 235
                 69***********************87779********************97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.3
                 SBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS  16 ttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 +t   a+ ++  +++ ++PV+  dg   Gi    +++
  CDO69459.1 351 ATAVYAVAEF-ASKF-GVPVI-ADG---GIGNVGHIV 381
                 5544455555.3447.89999.455...555555555 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   7.8   5.6e-12   8.4e-09     185     304 ..     202     398 ..      68     407 .. 0.62

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.6e-12
                 H.......................................................................THHHHHHCCCHB-TC--HHHHHHHHHH CS
      FMN_dh 185 l.....................................................................kkasaaaefvgkqldpsltwddikwlreq 214
                 +                                                                     ++  +   + ++q ++  + + i+w++++
  CDO69459.1 202 EandilrdskkgklpivnkdgrlvsllarsdllknktyplaskrpeskqlyaaaaigtrpadrerlallvEAGLDIVVLDSSQGNSIYQIEMIRWIKQT 300
                 35555555555555555555556666666666666666666666666666666666665555555554433333333555666677779999*****98 PP

                 HS.SEEEEEEE-SHHHHHHHHHTTESEEEE--GGG......TSSTT---HHHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHH CS
      FMN_dh 215 tk.lplvvKGvltaedakraveaGvdgivvSNHGG......RqldgapatidvLpeiveavgg.rievlvDgGirrGsDvlkAlalGAdavllGRpfl 304
                  + l+++   v+t e a  +++aG+dg+ v    G        +    +   +  +++e + +  ++v++DgGi +  +++kAlalGA av++G  ++
  CDO69459.1 301 YPkLEVIAGNVVTREQAASLIAAGADGLRVGMGSGsicitqEVMAVGRPQATAVYAVAEFASKfGVPVIADGGIGNVGHIVKALALGAGAVMMGGLLA 398
                 7659***************************9999899987444445555555555555555434*****************************8765 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0066       9.8       4      41 ..      66     103 ..      63     129 .. 0.80
   2 !   16.3  10.7   3.2e-06    0.0048     145     232 ..     313     404 ..     303     417 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0066
         NMO   4 ltellkikppvvqpgmggiskarLaaavsnaGgLGvla 41 
                 +t  ++ k p + ++m  +++ ++a a +  Gg+Gv+ 
  CDO69459.1  66 ITRNVTLKTPFMSSPMDTVTESEMAIAMALLGGIGVIH 103
                 566778899***************************97 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.2e-06
         NMO 145 svkearkvearGaDalivqGpeaGGhqG...tpevgdkglfaLvpqvldavd...iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesd 232
                 + ++a  ++a+GaD l v G+ +G        ++vg  + +a+   v++  +   +PviA GGi +   +  aLalGA +v +g  + +t e++
  CDO69459.1 313 TREQAASLIAAGADGLRV-GMGSGSICItqeVMAVGRPQATAVY-AVAEFASkfgVPVIADGGIGNVGHIVKALALGAGAVMMGGLLAGTTEAP 404
                 556677777888887765.6666655442234444433333333.3333333577******************************999999987 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.1     3e-07   0.00044     165     210 ..     355     400 ..     335     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3e-07
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTS CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavllntavaea 210
                 +a+  + +++ vPvi D Gig+  ++++a+ lGa av++   +a +
  CDO69459.1 355 YAVAEFASKFGVPVIADGGIGNVGHIVKALALGAGAVMMGGLLAGT 400
                 5677788899****************************98777765 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.061        91      48     102 ..     277     333 ..     272     338 .. 0.76
   2 !   19.1   1.0   4.9e-07   0.00073     165     223 ..     339     397 ..     331     401 .. 0.90
   3 ?   -3.5   0.0       3.9   5.8e+03      81     102 ..     506     527 ..     504     532 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.061
                   EEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S..EEEES CS
  His_biosynth  48 vvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad..kviig 102
                   +v ld ++ ++  ++++++ i ++      + G + + e++++l+ agad  +v +g
    CDO69459.1 277 IVVLDSSQGNSIYQIEMIRWIKQTYPKLEVIAGNVVTREQAASLIAAGADglRVGMG 333
                   566788888888899999998888554444555599*************95555555 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.9e-07
                   EEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHH CS
  His_biosynth 165 lltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelksegvdavivgsal 223
                   + +++ ++G  +   + ++ e+a+++ +pvia GG+g++ ++ ++ + g+ av++g +l
    CDO69459.1 339 ITQEVMAVGRPQATAVYAVAEFASKFGVPVIADGGIGNVGHIVKALALGAGAVMMGGLL 397
                   56789999999999999*********************************999999776 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.9
                   SSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  81 GIrsledveelleagadkviig 102
                   G+r++++++e ++ag  +  + 
    CDO69459.1 506 GVRNVKELQESVRAGKTRFELR 527
                   7777777777777776666555 PP

>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   5.1e-05     0.076      33      95 ..      74     138 ..      59     151 .. 0.79
   2 ?   -0.3   0.0      0.39   5.8e+02       3      33 ..     296     326 ..     294     333 .. 0.89
   3 ?   -0.3   0.1      0.39   5.8e+02     139     184 ..     352     397 ..     334     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
                 EEEE--STTTHHHH.HHTSSEEEEE-TT--HHHHHHHHHH.HHHHHHTT--EEEE-TTBTTBHHH CS
          HK  33 SPimseaeeEvsel.akianaLllNiGtleekaiealkaA.vksakevnrPvvlDPVgvgAtelR 95 
                  P ms   + v+e   +ia aLl  iG +++++  a++aA v++ k ++  ++ DPV  + t++ 
  CDO69459.1  74 TPFMSSPMDTVTESeMAIAMALLGGIGVIHHNQPAAAQAAmVRAVKRHENGFITDPVVLSPTNTV 138
                 57888887777664247*************9998888887357789999*********9998875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.39
                 HHHHH--EEEEE--TTTHHHHHHHHHHHT-E CS
          HK   3 klreksPlvhhiTNkVaqnfsANvllAlgaS 33 
                  ++++ P ++ i  +V++   A  l+A+ga 
  CDO69459.1 296 WIKQTYPKLEVIAGNVVTREQAASLIAAGAD 326
                 5789999999******************995 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHTSEEEEESSSEEEEESSEEEEEE-S-GGGGGST CS
          HK 139 aavaavqkvAqklrvvvvvtGevDvvsdgkkvyklknGtellgkit 184
                  av av + A k++v v++ G +  v    k + l  G  ++g + 
  CDO69459.1 352 TAVYAVAEFASKFGVPVIADGGIGNVGHIVKALALGAGAVMMGGLL 397
                 3588999999999999999999999999999999999999998665 PP

>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00039      0.59      46      82 ..     290     326 ..     264     339 .. 0.83
   2 ?   -2.0   0.1       1.3     2e+03     150     175 ..     367     393 ..     351     407 .. 0.52
   3 ?    0.6   0.0      0.21   3.1e+02     107     141 ..     506     542 ..     499     547 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHH-TTSEEEEES--SHHHHHHHHHCT-S CS
    Aldolase  46 aldairvlrkerpdllvgaGtvlnaeqlaeakeaGaq 82 
                  +++ir +++  p+l v aG v+++eq+a   +aGa+
  CDO69459.1 290 QIEMIRWIKQTYPKLEVIAGNVVTREQAASLIAAGAD 326
                 578999999**************************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                 EEEEBSS--.TTTHHHHHTSTTBS-EE CS
    Aldolase 150 rfiPtGGis.panvrdylalpsvlvvg 175
                  +i  GGi    ++ + lal++ +v+ 
  CDO69459.1 367 PVIADGGIGnVGHIVKALALGAGAVMM 393
                 444444443123444444444444444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.21
                 EESSHHHHHHHHHTT--EEEETT..TTTTTHHHHHHH CS
    Aldolase 107 GvstpseimlaldlGlkrlklfP..aeasGGvkalka 141
                 Gv ++ e+++++  G +r+ l    a++ GGv+ l++
  CDO69459.1 506 GVRNVKELQESVRAGKTRFELRTasAQIEGGVHGLNS 542
                 99****************9986511577899987765 PP

>> YpsA  YspA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.6e-05      0.13      30      71 ..     265     306 ..     261     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.6e-05
                 HHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EE CS
        YpsA  30 kklkelleeglewviisgqlGvelwaaevvleLkeeypelkl 71 
                 ++l  l+e gl+ v++  ++G  ++ +e++  +k++yp+l++
  CDO69459.1 265 ERLALLVEAGLDIVVLDSSQGNSIYQIEMIRWIKQTYPKLEV 306
                 789999********************************7765 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.033        49     171     215 ..     290     333 ..     281     338 .. 0.87
   2 ?    7.3   0.2    0.0014       2.2     174     213 ..     356     394 ..     338     405 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.033
                 -CHHHHHHHHH-S.S-EEEESS--SHHHHHHHHHHH--SEEEESCH CS
         Dus 171 dweaIkevkqavs.ipviaNGdIkdaedaqaileetGadgvmigrg 215
                 ++e I+ +kq  + + via G++ ++e+a   ++  Gadg+ +g g
  CDO69459.1 290 QIEMIRWIKQTYPkLEVIA-GNVVTREQAASLIAA-GADGLRVGMG 333
                 678999*******888887.*********999999.****999876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0014
                 HHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEES CS
         Dus 174 aIkevkqavsipviaNGdIkdaedaqaileetGadgvmig 213
                 a++e   ++ +pvia G+I ++  + ++l+  Ga +vm+g
  CDO69459.1 356 AVAEFASKFGVPVIADGGIGNVGHIVKALAL-GAGAVMMG 394
                 4566666777********************9.******98 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.25   3.8e+02      42      86 ..      52      91 ..      44     100 .. 0.69
   2 ?    9.0   3.2   0.00046      0.68     224     303 ..     321     394 ..     284     398 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.25
                  GEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHH CS
  Glu_synthase 42 lleldaaeealikleevepalkikkriltsamSyGalseeaheal 86
                  ++++ a  + +++++++  ++++k++++ s m   +   e++ a+
    CDO69459.1 52 KIDFAA--QEVVTESRITRNVTLKTPFMSSPMDTVT---ESEMAI 91
                  455533..33467999**************997543...333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00046
                   HHTT-SEEEEE-TT---SSEEHHHHH...HB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-S CS
  Glu_synthase 224 akanadiilidGleGGTGAspkssik...haGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgig 303
                     a+ad     Gl+ G G     +++    +G P  +a+ +v +   +      v +iadGg+     +vkalalGA av +g
    CDO69459.1 321 IAAGAD-----GLRVGMGSGSICITQevmAVGRPQATAVYAVAEFASKF----GVPVIADGGIGNVGHIVKALALGAGAVMMG 394
                   334444.....34445554444443311168999999988887765554....589************************998 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.071   1.1e+02     128     165 ..     291     328 ..     287     332 .. 0.76
   2 ?    7.1   0.3    0.0022       3.3     128     167 ..     354     393 ..     342     395 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.071
                   HHHHCTSTTS....EEEEESS--SHHHHHHHCTT.SSEE CS
  G3P_antiterm 128 pkvikeikkel.kipiiaGGLietkedveealkaGaiav 165
                    ++i+ ik++  k+++iaG  + t+e+  ++++aGa++ 
    CDO69459.1 291 IEMIRWIKQTYpKLEVIAGNVV-TREQAASLIAAGADGL 328
                   5789999999747777776655.6778889999999875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0022
                   HHHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE CS
  G3P_antiterm 128 pkvikeikkelkipiiaGGLietkedveealkaGaiavst 167
                      ++e+ +++ +p+ia G i +  ++ +al+ Ga av+ 
    CDO69459.1 354 VYAVAEFASKFGVPVIADGGIGNVGHIVKALALGAGAVMM 393
                   67889999****************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 3195.56
//
Query:       CDO69460.1  [L=711]
Description: hypothetical protein BN946_scf184817.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.84   10.0  11.4        3.2    8.2  11.4    2.0  1  Fez1      Fez1
        3.9    7.9  12.4        5.2    7.5   3.9    2.8  2  DUF4200   Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  11.4   0.00035       3.2      15     155 ..     145     314 ..     141     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00035
        Fez1  15 LKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeea 113
                 L +QL  + a v++++   ++   +++ +r++l ++ ++ +e+e++ e+ +++l+++ + + +   e+  +r + ++l ee+k lre+ + l +++   
  CDO69460.1 145 LSEQLAVAHALVAHRTAYALHAGEEVKAARSELARERAAREEAEKRCEKLQADLKQMSEYVPKLIFESMDMRAERDRLGEEVKALREANALLREKAGAG 243
                 677888888889999999999999999999999999999999999999999999999999999998888889889999999999999766655554444 PP

        Fez1 114 a.............................lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqa 155
                 +                               ++e   qr+++++++e ++ v++  a+ +eer+++e+ +
  CDO69460.1 244 VvkqlssesfeddkmmikeekpcfedepkpGVKNEDGCQRNSSSDVAEHDAAVAQALAQAHEERRQRERAE 314
                 4788888888888888888888888888773344446777779999999999*9999999****9999875 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.9   0.00058       5.2      55     107 ..     178     230 ..     137     238 .. 0.83
   2 ?    4.5   1.3     0.005        45      55      88 ..     290     323 ..     284     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00058
     DUF4200  55 kendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                     a r++a+k++e+ +   k++ + + kl  e +++++e+++l e+++ ++
  CDO69460.1 178 ARERAAREEAEKRCEKLQADLKQMSEYVPKLIFESMDMRAERDRLGEEVKALR 230
                 455677888999999999999999999999999999999******99999876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.005
     DUF4200  55 kendakraralkkaeeerklkkekeaeikklkae 88 
                  e+da  a+al +a+eer+++++ e+ ++ +ka 
  CDO69460.1 290 AEHDAAVAQALAQAHEERRQRERAERALAVMKAL 323
                 6899999***************999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1333  (0.0743488); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 4239.20
//
Query:       CDO69461.1  [L=737]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-65  220.1   0.3    5.6e-65  219.1   0.3    1.5  1  Glyco_hydro_61  Glycosyl hydrolase family 61
    1.2e-19   70.2   0.4    1.2e-19   70.2   0.4    2.6  2  DnaJ            DnaJ domain
    4.8e-14   51.3  13.7     0.0034   17.4   0.1    6.8  6  TPR_2           Tetratricopeptide repeat
    5.1e-13   49.0   7.8    5.3e-05   23.3   0.1    5.1  5  TPR_9           Tetratricopeptide repeat
    6.7e-13   49.0  16.8     0.0002   21.8   3.3    7.1  7  TPR_19          Tetratricopeptide repeat
    4.5e-11   42.6  12.4       0.13   13.1   0.4    6.4  5  TPR_14          Tetratricopeptide repeat
    5.8e-11   41.7  11.3    0.00017   21.3   0.2    6.2  5  TPR_1           Tetratricopeptide repeat
    1.7e-10   41.4  11.5    3.9e-06   27.4   1.9    4.5  4  TPR_16          Tetratricopeptide repeat
      3e-10   39.6   7.1    5.9e-06   25.9   1.9    5.9  6  TPR_11          TPR repeat
      8e-06   26.1   9.3     0.0086   16.3   0.5    4.5  4  TPR_12          Tetratricopeptide repeat
    0.00089   19.1   3.7        3.3    8.0   0.1    5.0  5  TPR_7           Tetratricopeptide repeat
     0.0012   18.6   7.7       0.11   12.4   0.0    4.2  4  TPR_10          Tetratricopeptide repeat
     0.0012   19.0   3.0      0.011   16.1   0.4    3.8  4  TPR_17          Tetratricopeptide repeat
     0.0021   18.6  19.9       0.66   10.7   0.1    7.1  7  TPR_6           Tetratricopeptide repeat
     0.0043   17.5   7.3      0.015   15.7   0.2    3.7  3  BTAD            Bacterial transcriptional activator domain
  ------ inclusion threshold ------
      0.023   15.0   7.1       0.27   11.6   0.2    3.9  3  TPR_20          Tetratricopeptide repeat
      0.095   12.8   2.0       0.83    9.8   0.0    3.2  3  Fis1_TPR_C      Fis1 C-terminal tetratricopeptide repeat
       0.12   12.5   0.5        5.6    7.0   0.1    2.5  2  Acetyltransf_9  Acetyltransferase (GNAT) domain
       0.12   12.6  18.0       0.36   11.2   0.1    6.3  6  TPR_8           Tetratricopeptide repeat
          3    8.7  11.3         22    6.0   0.1    4.5  4  TPR_4           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.3   6.3e-68   5.6e-65       1     201 [.      19     231 ..      19     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 219.1 bits;  conditional E-value: 6.3e-68
                     XEEEEEEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCSTTB.....--S.SBEEEETTSEEEEEEES......S.....C-TT--S-EE CS
  Glyco_hydro_61   1 HgvvksltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCnkag.....paa.avaevkaGdtvtfewke......k.....wissHkGpvl 78 
                     H+++++l+vng+++ g+ + +r +     +gp+tdvts+di+Cn++      p++ av++v+aG+tvt+ew++      +     + +sHkGp++
      CDO69461.1  19 HTIFQKLYVNGVDQ-GELTGIRAP---DYDGPITDVTSNDIICNGGInpyhqPVSkAVINVPAGATVTAEWHHtlnqqpNdpadpIDASHKGPII 109
                     9************6.666667665...6779*************533334446665669*************9887665156664559******* PP

                     EEEEE-SSS-GTTT--GGGCEEEEEEEE-EETE-STEHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEES.S CS
  Glyco_hydro_61  79 vYlakcasgddcktvdgsglkWfKideegldasakkWatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtg.s 172
                      Ylak++   d+++ d +gl+WfKi+e+gl+ s+++Wa+d+l++n+ k+s++iP+++++G+YllRhEiiALh+a++++gaQfY++Caq+++tg s
      CDO69461.1 110 SYLAKIP---DATQSDVTGLQWFKIYEDGLTVSDQSWAVDRLIANKGKVSFQIPSCIQSGQYLLRHEIIALHAASNYPGAQFYMECAQINITGgS 201
                     ******5...57888999999************999******99999*********************************************856 PP

                     -SB.--.EEGCCSS-TTSTTTSS-TTTTST CS
  Glyco_hydro_61 173 gtalpe.vsfpgaykasdpgilvniyeesk 201
                     g ++p+ v fpgay+ +dpgi +niy++ k
      CDO69461.1 202 GAKTPAtVPFPGAYHGTDPGIKINIYQNLK 231
                     7788966******************98654 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.5   3.1e+03      41      58 ..     607     624 ..     602     625 .. 0.78
   2 !   70.2   0.4   1.4e-22   1.2e-19       1      63 []     626     684 ..     626     684 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHTSHHH CS
        DnaJ  41 ekFkeineAyevLsdpek 58 
                 e  +++++A + L+++++
  CDO69461.1 607 EIHQKLQKAQKLLKQSKQ 624
                 56689999*999998876 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 1.4e-22
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 dyY++Lgv++da++++IkkaYrk +l  HPDk      +e k   +neAyevLsdpe R++YD
  CDO69461.1 626 DYYKVLGVARDADAKTIKKAYRKAVLTAHPDKG----GSEAKMAAVNEAYEVLSDPELRQRYD 684
                 8********************************....8899*********************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00044      0.39      11      33 ..     239     261 ..     237     262 .. 0.89
   2 !   17.4   0.1   3.8e-06    0.0034       3      31 ..     265     293 ..     263     296 .. 0.93
   3 !    8.5   0.2    0.0027       2.4       3      26 ..     300     323 ..     298     326 .. 0.90
   4 ?    3.3   0.0      0.12   1.1e+02       6      30 ..     383     407 ..     378     409 .. 0.89
   5 !   15.0   0.1   2.2e-05      0.02       1      29 [.     571     599 ..     571     602 .. 0.92
   6 ?   -2.4   0.1         8   7.2e+03      16      27 ..     611     622 ..     609     626 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00044
       TPR_2  11 yyklgdyeeAleafekAleldPn 33 
                 ++ +g++++A++a+ +A+e  P 
  CDO69461.1 239 LLTAGQFNDAARAYSEAIEQSPA 261
                 6779****************996 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 3.8e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 ++y ++ ayy +g++  Al++f+++l+l 
  CDO69461.1 265 LYYKRATAYYSMGRHPAALADFDQVLSLT 293
                 79************************996 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0027
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 a+ +++++ +k g+++eA++a++k
  CDO69461.1 300 ANLMQARIFAKEGKFAEARDALRK 323
                 677899***************998 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.12
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 +++++ +++gd e A++++ +  +l
  CDO69461.1 383 QRADCSIAAGDIEGAVADLSRLAQL 407
                 7999***************999887 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 2.2e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a++l  +G+a++++ ++eeA++++e+A e
  CDO69461.1 571 ADGLIGRGEALMAKEEWEEAVRLLERAFE 599
                 678999*********************76 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 8
       TPR_2  16 dyeeAleafekA 27 
                 ++++A ++++++
  CDO69461.1 611 KLQKAQKLLKQS 622
                 678888888876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.6   1.8e-06    0.0016       6      64 ..     240     298 ..     237     306 .. 0.86
   2 ?    3.4   0.0     0.095        86      36      65 ..     305     334 ..     300     342 .. 0.74
   3 !   23.3   0.1   5.9e-08   5.3e-05       5      58 ..     354     407 ..     352     418 .. 0.95
   4 ?   -0.3   0.0       1.4   1.2e+03      47      71 ..     437     461 ..     435     463 .. 0.81
   5 ?    3.6   0.0     0.085        77      27      60 ..     569     602 ..     544     618 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.8e-06
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 + + ++  a +++   +   P d  +++ R+ +++ +G+  aAlad+++ l+l+ d  d
  CDO69461.1 240 LTAGQFNDAARAYSEAIEQSPADYLLYYKRATAYYSMGRHPAALADFDQVLSLTNDTFD 298
                 5677888999999999999*******************************999876655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.095
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapda 65 
                 +++ a+ G +++A+++L  y  +   + + 
  CDO69461.1 305 ARIFAKEGKFAEARDALRKYTTKVKGDSAS 334
                 7889999*************9554444444 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 5.9e-08
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylal 58 
                 air++ w+++++ + + l+ a++++ +r  R+ +    G++++A+adL + ++l
  CDO69461.1 354 AIRAKLWQACIESASMALATASHSVKLRQQRADCSIAAGDIEGAVADLSRLAQL 407
                 79**********************************************998876 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.4
       TPR_9  47 aAladLeaylalapdapdaeairaq 71 
                  Al  L ++l+ +pd p+   +  +
  CDO69461.1 437 PALSTLKQCLHYDPDSPQCLSLHRL 461
                 6899999999999999998777665 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.085
       TPR_9  27 ddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 +d++ +  RG +l+  + +++A++ Le++ ++++
  CDO69461.1 569 NDADGLIGRGEALMAKEEWEEAVRLLERAFEVTG 602
                 6777777899999999**********99988775 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   3.3   2.2e-07    0.0002       1      57 [.     239     295 ..     239     305 .. 0.89
   2 !   13.4   0.1   9.3e-05     0.083       4      60 ..     276     333 ..     275     341 .. 0.86
   3 !   12.3   0.2    0.0002      0.18      16      68 .]     369     421 ..     352     421 .. 0.91
   4 ?   -0.3   0.0       1.7   1.5e+03      10      26 ..     438     454 ..     437     461 .. 0.74
   5 ?    3.6   0.0      0.11        97      29      57 ..     539     567 ..     502     577 .. 0.79
   6 !    9.6   0.2    0.0014       1.3      19      62 ..     565     609 ..     563     615 .. 0.81
   7 ?    0.1   0.1       1.3   1.2e+03       5      19 ..     610     624 ..     608     635 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.2e-07
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ll +g++ +A++++++a++++p +  + +  A a++++g+  +A a  d+++  + d
  CDO69461.1 239 LLTAGQFNDAARAYSEAIEQSPADYLLYYKRATAYYSMGRHPAALADFDQVLSLTND 295
                 6889****************************************9988888877766 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.3e-05
      TPR_19   4 egdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpddar 60 
                 +g++ +Ala + q+l+  ++  + a l  A++  + g ++eA+++L ++  + + d++
  CDO69461.1 276 MGRHPAALADFDQVLSLTNDtFDKANLMQARIFAKEGKFAEARDALRKYTTKVKGDSA 333
                 79*************99666599999988*****************999887777665 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.0002
      TPR_19  16 qalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                  al+ + ++  +r + A++ +a+g+++ A a L++l +    +  +++ +A+l
  CDO69461.1 369 MALATASHSVKLRQQRADCSIAAGDIEGAVADLSRLAQLSTPTTSVWMKMARL 421
                 5789999*****************************99999999999999987 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.7
      TPR_19  10 Alalleqalqedpknae 26 
                 Al+ l+q l +dp+++ 
  CDO69461.1 438 ALSTLKQCLHYDPDSPQ 454
                 67778888888887764 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.11
      TPR_19  29 llLAeallalgqldeAealLdalpeedpd 57 
                    ++a+++++q ++ e+ +++l++++  
  CDO69461.1 539 RSVCRAYVKTNQAKKGEQWCSELLQMQGM 567
                 4559***************9999988765 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.0014
      TPR_19  19 qedpknaearllLAeallalgqldeAealLdalpeedpdd.arya 62 
                 q   ++a+ +++  eal+a  +++eA +lL+++ e +  +  +++
  CDO69461.1 565 QGMENDADGLIGRGEALMAKEEWEEAVRLLERAFEVTGRSnREIH 609
                 55678999999********************99887776545555 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 1.3
      TPR_19   5 gdyaeAlalleqalq 19 
                 ++++ A++ll+q  q
  CDO69461.1 610 QKLQKAQKLLKQSKQ 624
                 578888888888644 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   0.00015      0.13      11      39 ..     239     267 ..     237     270 .. 0.88
   2 !    9.1   0.2     0.003       2.7       3      43 ..     265     306 ..     264     307 .. 0.86
   3 !   10.0   0.1    0.0015       1.3       3      35 ..     300     332 ..     298     341 .. 0.82
   4 ?    5.9   0.0      0.03        27       2      44 .]     379     421 ..     378     421 .. 0.87
   5 !   12.6   0.2   0.00022       0.2       7      39 ..     577     610 ..     571     616 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
      TPR_14  11 llalGdpdeAiallrralalaPddaeawl 39 
                 ll++G++ +A++++ +a+++ P+d  +++
  CDO69461.1 239 LLTAGQFNDAARAYSEAIEQSPADYLLYY 267
                 789*******************9988776 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.003
      TPR_14   3 allalaeallalGdpdeAiallrralal.aPddaeawlllaq 43 
                 +++++a a++  G++ +A+a ++++l+l + +++ a+l+ a+
  CDO69461.1 265 LYYKRATAYYSMGRHPAALADFDQVLSLtNDTFDKANLMQAR 306
                 689************************724567889998887 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0015
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 a l+ a++++  G+++eA+++lr++  +  +d 
  CDO69461.1 300 ANLMQARIFAKEGKFAEARDALRKYTTKVKGDS 332
                 67999******************9987766655 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.03
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 ++++++a+   a+Gd ++A+a l r+ +l      +w+ +a+l
  CDO69461.1 379 KLRQQRADCSIAAGDIEGAVADLSRLAQLSTPTTSVWMKMARL 421
                 57889999999***************99976668999999986 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 0.00022
      TPR_14   7 laeallalGdpdeAiallrrala.laPddaeawl 39 
                 ++eal+a ++++eA++ll+ra + ++ +++e++ 
  CDO69461.1 577 RGEALMAKEEWEEAVRLLERAFEvTGRSNREIHQ 610
                 89*******************9833456677664 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.4   2.2e+03       9      17 ..     225     233 ..     223     234 .. 0.90
   2 !    8.7   0.0    0.0017       1.6      13      32 ..     241     260 ..     238     262 .. 0.88
   3 !   21.3   0.2   1.9e-07   0.00017       3      30 ..     265     292 ..     263     292 .. 0.94
   4 ?    2.9   0.2      0.12   1.1e+02       8      26 ..     305     323 ..     302     324 .. 0.88
   5 !   10.8   0.0   0.00039      0.35       1      29 [.     571     599 ..     571     600 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.4
                 HHHHHTT-H CS
       TPR_1   9 nayfklgky 17 
                 n+y++l++y
  CDO69461.1 225 NIYQNLKNY 233
                 89******9 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0017
                 HTT-HHHHHHHHHHHHHHST CS
       TPR_1  13 klgkydeAleyyekALelnP 32 
                   g++++A  +y++A+e  P
  CDO69461.1 241 TAGQFNDAARAYSEAIEQSP 260
                 579**************988 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALel 30 
                  +y ++ ay+++g++  Al++++++L+l
  CDO69461.1 265 LYYKRATAYYSMGRHPAALADFDQVLSL 292
                 69***********************987 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.12
                 HHHHHHTT-HHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyek 26 
                 + ++ k gk+ eA ++ +k
  CDO69461.1 305 ARIFAKEGKFAEARDALRK 323
                 56899**********9987 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a+ l ++G a++ +++++eA+   e+A e
  CDO69461.1 571 ADGLIGRGEALMAKEEWEEAVRLLERAFE 599
                 78899*********************977 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   1.9   4.4e-09   3.9e-06       6      61 ..     238     290 ..     237     298 .. 0.92
   2 !   11.1   0.0   0.00054      0.48       1      37 [.     302     338 ..     302     341 .. 0.88
   3 ?   -1.5   0.1       4.8   4.3e+03      41      60 ..     385     404 ..     383     408 .. 0.64
   4 ?    6.1   0.1      0.02        18       3      27 ..     577     601 ..     570     608 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.4e-09
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 ++l ag++ dAa+a+ +a+++    P+++  ++ ++ a++  gr+++A+a ++  l
  CDO69461.1 238 SLLTAGQFNDAARAYSEAIEQS---PADYLLYYKRATAYYSMGRHPAALADFDQVL 290
                 7999******************...************************8887765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00054
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAl 37 
                 l++ar++++ g++++A+ al+ ++ + +++++  e +
  CDO69461.1 302 LMQARIFAKEGKFAEARDALRKYTTKVKGDSASQEVM 338
                 79********************999999888776665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.8
      TPR_16  41 gdaalrqgrlaeAaalyraa 60 
                 +d+  ++g+ ++A+a + ++
  CDO69461.1 385 ADCSIAAGDIEGAVADLSRL 404
                 66667777777777555554 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.02
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 ++ a+++  ++++A+++le+a +  
  CDO69461.1 577 RGEALMAKEEWEEAVRLLERAFEVT 601
                 4666777777777777777776665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   1.9   6.6e-09   5.9e-06       7      42 .]     242     277 ..     237     277 .. 0.94
   2 !   11.0   0.0    0.0003      0.27       3      28 ..     272     297 ..     270     298 .. 0.92
   3 ?    0.5   0.0      0.56     5e+02       2      19 ..     306     323 ..     305     323 .. 0.87
   4 ?    0.6   0.0      0.53   4.7e+02       7      23 ..     391     407 ..     389     409 .. 0.84
   5 ?   -1.5   0.0       2.4   2.1e+03      13      29 ..     438     454 ..     438     456 .. 0.84
   6 !    6.2   0.0    0.0091       8.1       1      22 [.     578     599 ..     578     612 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.6e-09
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                  G++++A  aY++A++ +P +  +yy+++ ayy +G
  CDO69461.1 242 AGQFNDAARAYSEAIEQSPADYLLYYKRATAYYSMG 277
                 69*******************************998 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0003
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdna 28 
                 ayy+ G+ ++A++++ + l l++d  
  CDO69461.1 272 AYYSMGRHPAALADFDQVLSLTNDTF 297
                 8*********************9975 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.56
      TPR_11   2 dayyeqGkyeeAieaYkk 19 
                 +++ + Gk+ eA  a++k
  CDO69461.1 306 RIFAKEGKFAEARDALRK 323
                 6899********998876 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.53
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                  G++e+A++++++  +l
  CDO69461.1 391 AGDIEGAVADLSRLAQL 407
                 69********9987776 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.4
      TPR_11  13 AieaYkkAlkldPdnae 29 
                 A+  +k+ l +dPd++ 
  CDO69461.1 438 ALSTLKQCLHYDPDSPQ 454
                 6677899999****995 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0091
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G a++++ ++eeA+  +++A +
  CDO69461.1 578 GEALMAKEEWEEAVRLLERAFE 599
                 889***************9976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.96   8.6e+02      56      73 ..     240     257 ..     237     261 .. 0.70
   2 !   16.3   0.5   9.6e-06    0.0086       5      70 ..     265     323 ..     262     326 .. 0.82
   3 ?   -2.5   0.0       7.3   6.6e+03       9      32 ..     384     407 ..     378     410 .. 0.81
   4 !   11.1   0.1   0.00042      0.38       7      33 ..     575     601 ..     570     608 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.96
      TPR_12  56 ralgryeeAlelleeala 73 
                 + +g++ +A +++ ea++
  CDO69461.1 240 LTAGQFNDAARAYSEAIE 257
                 567788888888877776 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 9.6e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 +++++a++++ +gr+  Al+ ++++l + + ++++ +          +r++ + g+++eA+++l++
  CDO69461.1 265 LYYKRATAYYSMGRHPAALADFDQVLSLTNDTFDKAN-------LMQARIFAKEGKFAEARDALRK 323
                 57799************************77766555.......3457888888888888888877 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.3
      TPR_12   9 laavlrrlgrydeAlellekalei 32 
                 +a++  ++g+ + A + l +  ++
  CDO69461.1 384 RADCSIAAGDIEGAVADLSRLAQL 407
                 688888999999999999988776 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00042
      TPR_12   7 nnlaavlrrlgrydeAlellekaleia 33 
                   ++++l++ ++++eA +lle+a e+ 
  CDO69461.1 575 IGRGEALMAKEEWEEAVRLLERAFEVT 601
                 5789********************987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.7   3.3e+03      13      32 ..     243     260 ..     240     262 .. 0.80
   2 ?    5.7   0.1      0.02        18       6      35 ..     270     299 ..     265     300 .. 0.90
   3 ?    1.7   0.0      0.37   3.4e+02       6      24 ..     305     323 ..     302     337 .. 0.85
   4 ?   -1.6   0.0       4.2   3.7e+03      18      34 ..     438     452 ..     438     453 .. 0.86
   5 !    8.0   0.1    0.0036       3.3       6      29 ..     578     599 ..     575     622 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.7
       TPR_7  13 GdyeeAielyeqsLaltkdp 32 
                 G++ +A++ y +  a++ +p
  CDO69461.1 243 GQFNDAARAYSE--AIEQSP 260
                 888999999999..888777 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpeda 35 
                 a +y ++G++  A+  + q+L lt+d +d+
  CDO69461.1 270 ATAYYSMGRHPAALADFDQVLSLTNDTFDK 299
                 789***********************9986 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.37
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 ar++ ++G+++eA + +++
  CDO69461.1 305 ARIFAKEGKFAEARDALRK 323
                 99***********887776 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.2
       TPR_7  18 AielyeqsLaltkdped 34 
                 A++ ++q   l++dp+ 
  CDO69461.1 438 ALSTLKQ--CLHYDPDS 452
                 78999**..9***9975 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0036
       TPR_7   6 arlysrlGdyeeAielyeqsLalt 29 
                 +++  +  ++eeA++l+e+  a++
  CDO69461.1 578 GEALMAKEEWEEAVRLLER--AFE 599
                 67778889***********..876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         4   3.6e+03      15      29 ..     242     256 ..     239     257 .. 0.65
   2 !   12.4   0.0   0.00012      0.11       9      32 ..     270     293 ..     266     299 .. 0.90
   3 !    7.5   0.2    0.0041       3.7       9      31 ..     578     600 ..     577     604 .. 0.87
   4 ?   -0.6   0.0       1.6   1.4e+03      31      42 .]     645     656 ..     634     656 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4
      TPR_10  15 rgrydeAealleeal 29 
                  g++++A + + ea+
  CDO69461.1 242 AGQFNDAARAYSEAI 256
                 467777777777766 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
      TPR_10   9 analrqrgrydeAealleealair 32 
                 a a++++gr+ +A+a+++++l++ 
  CDO69461.1 270 ATAYYSMGRHPAALADFDQVLSLT 293
                 89*******************975 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0041
      TPR_10   9 analrqrgrydeAealleealai 31 
                 + al +  +++eA++lle+a ++
  CDO69461.1 578 GEALMAKEEWEEAVRLLERAFEV 600
                 66888999************987 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.6
      TPR_10  31 irrrllGpdHPd 42 
                 ++r+++ + HPd
  CDO69461.1 645 AYRKAVLTAHPD 656
                 5999999****8 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4   1.2e-05     0.011       2      33 ..     252     283 ..     251     284 .. 0.92
   2 ?   -1.2   0.0         4   3.6e+03      17      33 ..     302     318 ..     293     319 .. 0.81
   3 ?   -1.2   0.0         4   3.6e+03       2      14 ..     442     454 ..     441     461 .. 0.83
   4 ?   -1.3   0.0       4.2   3.8e+03      11      33 ..     569     591 ..     568     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y +a+e+ P +  +y+ +A+++++ G++  A+
  CDO69461.1 252 YSEAIEQSPADYLLYYKRATAYYSMGRHPAAL 283
                 899***********************988775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4
      TPR_17  17 nnLAelllknGdlmtAr 33 
                  + A++++k G++++Ar
  CDO69461.1 302 LMQARIFAKEGKFAEAR 318
                 5679999999**99998 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4
      TPR_17   2 ylkaleldPnnad 14 
                 ++++l +dP+++ 
  CDO69461.1 442 LKQCLHYDPDSPQ 454
                 689*******975 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 4.2
      TPR_17  11 nnadaynnLAelllknGdlmtAr 33 
                 n+ad +  ++e+l  + ++++A+
  CDO69461.1 569 NDADGLIGRGEALMAKEEWEEAV 591
                 89999999******999999985 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.32   2.8e+02      12      31 ..     241     260 ..     227     262 .. 0.86
   2 !   10.7   0.1   0.00074      0.66       3      27 ..     266     290 ..     265     292 .. 0.94
   3 !    8.2   0.3    0.0048       4.3       4      28 ..     302     326 ..     299     328 .. 0.89
   4 ?    1.3   0.1      0.76   6.8e+02       6      28 ..     384     406 ..     382     407 .. 0.88
   5 ?   -0.3   0.0       2.4   2.1e+03      18      33 .]     437     452 ..     423     452 .. 0.90
   6 ?    3.8   0.0      0.12     1e+02       5      26 ..     576     597 ..     572     599 .. 0.81
   7 ?   -1.7   0.1         7   6.3e+03       7      25 ..     602     621 ..     601     625 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHH-T CS
       TPR_6  12 klgdtdkAlealerlikeYP 31 
                  +g+  +A +a+ + i++ P
  CDO69461.1 241 TAGQFNDAARAYSEAIEQSP 260
                 4689************9988 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00074
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                 +yk+a +y+++g++ +Al+ +++++
  CDO69461.1 266 YYKRATAYYSMGRHPAALADFDQVL 290
                 7*********************998 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlik 28 
                 +++a+ + k g+ ++A++al++  +
  CDO69461.1 302 LMQARIFAKEGKFAEARDALRKYTT 326
                 899******99**********9875 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.76
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 +a + +++gd + A++ l rl +
  CDO69461.1 384 RADCSIAAGDIEGAVADLSRLAQ 406
                 789999999*******9999975 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHH-TT- CS
       TPR_6  18 kAlealerlikeYPdS 33 
                  Al +l++++   PdS
  CDO69461.1 437 PALSTLKQCLHYDPDS 452
                 6999***********8 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerl 26 
                  +++++ +  ++++A+++ler 
  CDO69461.1 576 GRGEALMAKEEWEEAVRLLERA 597
                 5788888855*********995 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 7
                 HHHHHH.HHHHHHHHHHHHH CS
       TPR_6   7 alsyrk.lgdtdkAlealer 25 
                 ++s r+  ++ +kA ++l++
  CDO69461.1 602 GRSNREiHQKLQKAQKLLKQ 621
                 67778877899999999876 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.7e-05     0.015      72     128 ..     239     295 ..     234     302 .. 0.90
   2 ?    1.0   0.2      0.57   5.1e+02      61      90 ..     377     406 ..     299     411 .. 0.80
   3 ?    2.5   0.1       0.2   1.8e+02      12      33 ..     577     598 ..     556     621 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-05
                 HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
        BTAD  72 elrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLae 128
                 +l+ G+ ++a++ +++++++ P +  l+ +  +A++ +Gr  +AL+ ++++ +l ++
  CDO69461.1 239 LLTAGQFNDAARAYSEAIEQSPADYLLYYKRATAYYSMGRHPAALADFDQVLSLTND 295
                 678999******************************************998776555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        BTAD  61 rlealealaeaelrlGraeealaelealva 90 
                  ++  +++a+  ++ G++e a+a+l++l++
  CDO69461.1 377 SVKLRQQRADCSIAAGDIEGAVADLSRLAQ 406
                 456667788888888888888888888765 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.2
                 HHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  12 agraalaagdpeeaaelleaAl 33 
                 +g+a+ a++++eea++lle+A 
  CDO69461.1 577 RGEALMAKEEWEEAVRLLERAF 598
                 4555556666666666666554 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2    0.0003      0.27       8      53 ..     249     294 ..     244     324 .. 0.85
   2 ?    4.3   0.2     0.057        51       9      48 ..     365     404 ..     361     410 .. 0.86
   3 ?   -0.3   0.1       1.5   1.4e+03      20      53 ..     569     602 ..     563     624 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdr 53 
                  ++  +a++++p+d+ + ++ A+a+++ gr+ +Al+ + ++l+ + 
  CDO69461.1 249 ARAYSEAIEQSPADYLLYYKRATAYYSMGRHPAALADFDQVLSLTN 294
                 567889*****************************98877776554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.057
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLlei 48 
                 ++   ala++   +++r + A+  +aag+ e A++ L ++
  CDO69461.1 365 ESASMALATASHSVKLRQQRADCSIAAGDIEGAVADLSRL 404
                 56667889999999********************999765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.5
      TPR_20  20 ddldarldlAlallaagryeeAleqLleilkrdr 53 
                 +d d  +   +al+a+++ eeA+ +L + ++ + 
  CDO69461.1 569 NDADGLIGRGEALMAKEEWEEAVRLLERAFEVTG 602
                 5666667778899999999999988876666544 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.85   7.6e+02       5      29 ..     267     291 ..     263     304 .. 0.83
   2 ?    9.8   0.0   0.00092      0.83      20      45 ..     438     463 ..     436     467 .. 0.93
   3 ?   -2.1   0.0       4.7   4.2e+03      26      26 ..     580     580 ..     544     600 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.85
                 HHHHHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvdalLe 29 
                 Y  A ++y +g++  A+   d++L+
  CDO69461.1 267 YKRATAYYSMGRHPAALADFDQVLS 291
                 44899*******9999988888876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00092
                 HHHHHHHHHHHTTS-HHHHHHHHHHH CS
  Fis1_TPR_C  20 ArryvdalLeiEPenrQaqsLkelie 45 
                 A+  ++++L+ +P+  Q +sL++li+
  CDO69461.1 438 ALSTLKQCLHYDPDSPQCLSLHRLIK 463
                 88999*******************97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.7
                 H CS
  Fis1_TPR_C  26 a 26 
                 a
  CDO69461.1 580 A 580
                 2 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.12   1.1e+02       4      56 ..     291     349 ..     280     359 .. 0.66
   2 ?    7.0   0.1    0.0063       5.6       6      37 ..     583     614 ..     581     638 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.12
                     EE-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHT.......TSEEEEEEETTEEEEE CS
  Acetyltransf_9   4 elteedldevlellkyaFqdeespleeireyfrklle.......esrvlgaedngelvgq 56 
                     +lt + +d+++ ++++ F++e + + e+r ++rk++        +++v+ a  +gel+++
      CDO69461.1 291 SLTNDTFDKANLMQARIFAKEGKFA-EARDALRKYTTkvkgdsaSQEVMMAITEGELASK 349
                     5677788888888888888888877.3444444443323334333488888888888775 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0063
                     -GGGHHHHHHHHHHHTT----H..HHHHHHHH CS
  Acetyltransf_9   6 teedldevlellkyaFqdeespleeireyfrk 37 
                      +e+++e+++ll++aF+++ +  +ei++ ++k
      CDO69461.1 583 AKEEWEEAVRLLERAFEVTGRSNREIHQKLQK 614
                     689****************9986345444433 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       9.2   8.3e+03       9      17 ..     225     233 ..     225     234 .. 0.87
   2 ?    1.9   0.0      0.36   3.2e+02      12      34 .]     240     262 ..     237     262 .. 0.87
   3 ?   11.2   0.1    0.0004      0.36       3      33 ..     265     295 ..     263     296 .. 0.93
   4 ?    7.3   0.1    0.0071       6.3       2      28 ..     299     325 ..     298     326 .. 0.91
   5 ?   -1.2   0.0       3.6   3.2e+03       5      27 ..     382     404 ..     378     408 .. 0.78
   6 ?   -0.0   0.0       1.5   1.4e+03       6      29 ..     576     599 ..     571     601 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 9.2
                 HHHHHTT-H CS
       TPR_8   9 siylklgdy 17 
                 +iy++l++y
  CDO69461.1 225 NIYQNLKNY 233
                 59*****99 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.36
                 HHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  12 lklgdyeeAkeyyekaleldpdn 34 
                 l+ g+++ A  +y +a+e +p++
  CDO69461.1 240 LTAGQFNDAARAYSEAIEQSPAD 262
                 66799*************99975 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +yy+ + +y ++g++ +A + + ++l+l  d
  CDO69461.1 265 LYYKRATAYYSMGRHPAALADFDQVLSLTND 295
                 6**************************9765 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0071
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +a ++ ++i  k g++ eA  +++k++
  CDO69461.1 299 KANLMQARIFAKEGKFAEARDALRKYT 325
                 578899*******************86 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 3.6
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                 ++ +++ +  gd+e A++ + + 
  CDO69461.1 382 QQRADCSIAAGDIEGAVADLSRL 404
                 6788899999******9988665 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 1.5
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                   g +++ +++ eeA+  +e+a e
  CDO69461.1 576 GRGEALMAKEEWEEAVRLLERAFE 599
                 578899999999********9987 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.25   2.2e+02       6      22 ..     268     284 ..     264     284 .. 0.88
   2 ?    6.0   0.1     0.025        22       6      25 ..     303     322 ..     300     323 .. 0.89
   3 ?   -1.2   0.2       5.3   4.7e+03      12      22 ..     389     399 ..     383     399 .. 0.79
   4 ?    3.9   1.0      0.12   1.1e+02       4      26 .]     574     596 ..     571     596 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.25
       TPR_4   6 aLArallalGdldeAra 22 
                  +A a++  G++++A+a
  CDO69461.1 268 KRATAYYSMGRHPAALA 284
                 6899***********97 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.025
       TPR_4   6 aLArallalGdldeAralle 25 
                 ++Ar  +  G ++eAr++l+
  CDO69461.1 303 MQARIFAKEGKFAEARDALR 322
                 78999999***********9 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 5.3
       TPR_4  12 lalGdldeAra 22 
                  a+Gd + A a
  CDO69461.1 389 IAAGDIEGAVA 399
                 699****9986 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.12
       TPR_4   4 llaLArallalGdldeAraller 26 
                 l+++++al a  +++eA +ller
  CDO69461.1 574 LIGRGEALMAKEEWEEAVRLLER 596
                 788999999999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4612.76
//
Query:       CDO69462.1  [L=119]
Description: hypothetical protein BN946_scf184817.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.30s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 827.74
//
Query:       CDO69463.1  [L=275]
Description: hypothetical protein BN946_scf184817.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2028.68
//
Query:       CDO69464.1  [L=250]
Description: hypothetical protein BN946_scf184817.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0047   16.9   0.0      0.042   13.8   0.0    2.2  2  TLP1_add_C  Thiolase-like protein type 1 additional C-termina


Domain annotation for each model (and alignments):
>> TLP1_add_C  Thiolase-like protein type 1 additional C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.035   6.3e+02      10      32 ..      50      73 ..      42      92 .. 0.70
   2 !   13.8   0.0   2.4e-06     0.042       2      45 ..     183     225 ..     182     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.035
  TLP1_add_C 10 pvpevveeaeG.eatvEtyTvefn 32
                p  + +e  e+ +a +E yT + +
  CDO69464.1 50 PLAKYDEYLEQvDAAIERYTPPRS 73
                5666677778889******97655 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.4e-06
  TLP1_add_C   2 lqeevdavpvpevveeaeGeatvEtyTvefnRdgePekgfvvgR 45 
                 lq+e+++ p p+ +++++    +E+yT+++ R+g+  + fvv+ 
  CDO69464.1 183 LQKEFQHSPPPHFEQDYKDLWSLESYTTRM-REGQVDHEFVVAL 225
                 89***************************9.**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1711.37
//
Query:       CDO69465.1  [L=274]
Description: hypothetical protein BN946_scf184817.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00055   19.8   0.0     0.0047   16.8   0.0    2.2  2  TLP1_add_C  Thiolase-like protein type 1 additional C-termina


Domain annotation for each model (and alignments):
>> TLP1_add_C  Thiolase-like protein type 1 additional C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.044     8e+02      10      32 ..      74      97 ..      67     115 .. 0.70
   2 !   16.8   0.0   2.6e-07    0.0047       2      45 ..     207     249 ..     206     269 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.044
  TLP1_add_C 10 pvpevveeaeG.eatvEtyTvefn 32
                p  + +e  e+ +a +E yT + +
  CDO69465.1 74 PLAKYDEYLEQvDAAIERYTPPRS 97
                5566677778889******97654 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.6e-07
  TLP1_add_C   2 lqeevdavpvpevveeaeGeatvEtyTvefnRdgePekgfvvgR 45 
                 lq+e+++ p p+ +++++G   +E+yT+++ R+g+  + fvv+ 
  CDO69465.1 207 LQKEFQHSPPPHFEQDYKGLWSLESYTTRM-REGQVDHEFVVAL 249
                 89***************************9.*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1981.43
//
Query:       CDO69466.1  [L=478]
Description: hypothetical protein BN946_scf184817.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-160  532.2   0.0   7.2e-160  531.9   0.0    1.0  1  TIP49            TIP49 P-loop domain
    3.2e-19   68.8   0.0    6.7e-19   67.8   0.0    1.6  1  TIP49_C          TIP49 AAA-lid domain
      5e-11   43.2   0.0    1.1e-07   32.4   0.1    2.5  2  AAA              ATPase family associated with various cellul
    5.2e-10   39.3   0.0    2.8e-08   33.6   0.0    2.4  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    2.3e-07   31.1   0.1       0.01   16.1   0.1    2.5  2  AAA_22           AAA domain
      2e-06   28.3   0.0    2.2e-05   24.9   0.0    2.3  1  AAA_16           AAA ATPase domain
    3.8e-06   26.9   0.1     0.0018   18.3   0.0    2.4  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0015   18.8   0.1     0.0035   17.6   0.1    1.6  1  AAA_28           AAA domain
     0.0018   18.7   0.8      0.019   15.3   0.8    2.3  1  AAA_19           AAA domain
     0.0026   17.5   0.0     0.0052   16.5   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
     0.0055   16.1   0.0      0.026   13.9   0.0    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0068   16.0   0.1      0.013   15.1   0.1    1.5  1  AAA_25           AAA domain
     0.0073   16.5   0.0      0.027   14.6   0.0    1.9  2  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.013   16.1   0.0      0.094   13.3   0.0    2.2  2  AAA_18           AAA domain
      0.015   15.0   0.0        1.5    8.5   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
      0.018   14.5   0.1       0.13   11.8   0.0    2.1  2  AAA_7            P-loop containing dynein motor region
      0.051   13.3   0.1        0.4   10.4   0.0    2.2  2  AAA_30           AAA domain
      0.078   12.9   0.0       0.14   12.1   0.0    1.4  1  NACHT            NACHT domain
      0.098   12.7   0.0        1.9    8.4   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
        0.1   12.1   0.1       0.39   10.1   0.0    1.9  2  PhoH             PhoH-like protein
       0.11   12.5   0.0         23    5.0   0.0    2.5  2  AAA_14           AAA domain
       0.12   11.6   0.1        0.6    9.4   0.1    1.9  2  Zeta_toxin       Zeta toxin
       0.12   12.2   0.0       0.21   11.5   0.0    1.3  1  Rad17            Rad17 P-loop domain
       0.13   12.0   0.0       0.29   10.9   0.0    1.5  1  AAA_11           AAA domain
       0.17   11.9   0.0       0.37   10.8   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.17   10.9   0.0       0.33   10.0   0.0    1.4  1  Parvo_NS1        Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.9   0.0    1e-162  7.2e-160       1     350 [.      36     390 ..      36     391 .. 0.99

  Alignments for each domain:
  == domain 1  score: 531.9 bits;  conditional E-value: 1e-162
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   1 rislhshikgLGldedgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevl 99 
                 ri+ hshikgLGl+++g a +++ g++Gq++area+gv+v+l+k++k++Gra+Ll+Gp+gtGktala+ais+elg++vpf+ ++gsevys+evkktevl
  CDO69466.1  36 RIAPHSHIKGLGLNAEGFAVADSAGFIGQTEAREACGVVVDLVKSRKFSGRALLLVGPPGTGKTALALAISQELGAKVPFCPMVGSEVYSTEVKKTEVL 134
                 7999*********************************************************************************************** PP

                 XXXXXXXXXXXXXX-S-EEEEEEEEEEE...-SSS-...TTS--EEEEEE-SS-EEEEEE-HHHHHHHHHHT--TT-EEEEETTT--EEE-SSS-SS-- CS
       TIP49 100 tqalrksigvrikeekevleGevveleveeaenpls.kekkikevkitlktakeekklklgskiaeellkekvkegDviviekesGkvkklGrsearak 197
                  +a+r++ig+rike+kev+eGev+el+++e+enpls ++k++++v++ lkt+ ++k+l+l+++i+e++lkek+++gDvi+ie+++G+vk++Grs+a+a+
  CDO69466.1 135 AEAFRRAIGLRIKETKEVYEGEVTELTPTESENPLSgYGKTVSHVIVGLKTVRGTKQLRLDPSIYEAILKEKIQVGDVIYIEANTGAVKRVGRSDAYAS 233
                 ************************************9************************************************************** PP

                 ----S--------S---S----XXXXXXXXXXXXXXXXX...XXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 198 efDiekdefvelPkGevekkkevvqevtLhdlDvanarp...qdllslllqllkskkteiteklreeinkkvakyveegkaeivpGvlfiDevhmlDie 293
                 ++D+e++++v+lPkG+v+kkke+vq+vtL dlD+anarp   qd++s++ +l+ks +teiteklr+e+n++v+ yv++g+ae+vpGv+fiDevhmlDie
  CDO69466.1 234 SYDLESETYVPLPKGDVHKKKELVQDVTLGDLDAANARPqggQDIMSVMGSLVKSGRTEITEKLRREVNRVVKGYVDQGVAEVVPGVVFIDEVHMLDIE 332
                 ***************************************9999******************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 294 cfsylnraleselaPivilatnrgiakirGt.diisphGipvDlldrlliiktekytk 350
                 cf+yln  les++aP v+latnrg a +rGt di +phG+pvDlldr li++t++y+k
  CDO69466.1 333 CFTYLNALLESPMAPTVVLATNRGNALVRGTtDIYAPHGVPVDLLDRCLIVRTTPYEK 390
                 ******************************99************************98 PP

>> TIP49_C  TIP49 AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   9.8e-22   6.7e-19       1      66 []     396     461 ..     396     461 .. 0.99

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 9.8e-22
     TIP49_C   1 IlkiRakeEgvkldeeAldlLakigtetSLRYaiqLltpasilakkrkkkevevedveeveeLFlD 66 
                 ++++Ra++Eg+kl e  l++La+ g+ +SLRYa+qLltpasila + ++k++e+ed+ e+ eLFlD
  CDO69466.1 396 VVQLRANVEGLKLGEGVLERLAQKGSDSSLRYALQLLTPASILAGLAGRKQIELEDIDEMGELFLD 461
                 6899*************************************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   1.5e-10   1.1e-07       1      45 [.      88     134 ..      88     178 .. 0.82
   2 !    8.3   0.0    0.0044         3      31      70 ..     290     329 ..     274     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.5e-10
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekk 45 
                 +ll+GppGtGKT+la a+ +elg  v+f+ + gse+ s  v+++e  
  CDO69466.1  88 LLLVGPPGTGKTALALAISQELGakVPFCPMVGSEVYSTEVKKTEVL 134
                 69*******************854499*********97766655533 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0044
                 TTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGH CS
         AAA  31 gsellskyvgesekkirelfkeakekakpsilfiDEidal 70 
                  +e+++k+  e ++ +++++++  ++  p ++fiDE++ l
  CDO69466.1 290 RTEITEKLRREVNRVVKGYVDQGVAEVVPGVVFIDEVHML 329
                 56788888999999999999995444469********987 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.1e-11   2.8e-08       8      61 ..      60     113 ..      56     123 .. 0.94
   2 ?    2.9   0.0      0.12        82      87     105 ..     320     338 ..     313     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.1e-11
      RuvB_N   8 eyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvkl 61 
                  +igq++ +e   ++++  k+r+ +   +ll+GpPG Gkt+la  i++elg+k+
  CDO69466.1  60 GFIGQTEAREACGVVVDLVKSRKFSGRALLLVGPPGTGKTALALAISQELGAKV 113
                 69*************************************************987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
      RuvB_N  87 vlfideihrlsraveevly 105
                 v+fide+h l+ +   +l 
  CDO69466.1 320 VVFIDEVHMLDIECFTYLN 338
                 89******99877665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.5e-05      0.01       4      70 ..      84     148 ..      81     181 .. 0.64
   2 !   12.3   0.0   0.00022      0.15      55     118 ..     277     343 ..     230     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.....fvtlpsstsskdllrellralglelka 70 
                 + + l+++G++GtGKT l+  + ++l +       ++++      +v+ ++ ++ + l++++ ra+gl+ k+
  CDO69466.1  84 SGRALLLVGPPGTGKTALALAISQELGA-------KVPFCpmvgsEVYSTEVKKTEVLAEAFRRAIGLRIKE 148
                 67899***************99999942.......2222223334444444444444555555555555544 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00022
      AAA_22  55 dllrellralglelkaerlsseellealeqalrarav.......ielliiDEaqhlrseealeeLrsllnl 118
                 d+++ + + +++++ +    +e l++ +++ ++ + +       ++++ iDE++ l   e++++L  ll+ 
  CDO69466.1 277 DIMSVMGSLVKSGRTE---ITEKLRREVNRVVKGYVDqgvaevvPGVVFIDEVHML-DIECFTYLNALLES 343
                 4444444555544444...78888899999999888899999999***********.9******9999883 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.2e-08   2.2e-05      21     107 ..      82     261 ..      72     351 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.2e-08
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd.........ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.... 106
                 + +++++ll+G++G+GK++l+ ++ ++l ++         +++ ++ k ++         la+a+ r + +     e+++   ++  e  +++ +    
  CDO69466.1  82 KFSGRALLLVGPPGTGKTALALAISQELGAKvpfcpmvgsEVYSTEVKKTEV--------LAEAF-R-RAIGLRIKETKEVYEGEVTELTPTESEnpls 170
                 344599*************************555554443344444444444........88888.6.6666666665554444444444444445555 PP

      AAA_16 107 ..........................................................................................a 107
                                                                                                            
  CDO69466.1 171 gygktvshvivglktvrgtkqlrldpsiyeailkekiqvgdviyieantgavkrvgrsdayassydlesetyvplpkgdvhkkkelvqdvT 261
                 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555551 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-06    0.0018       2      27 ..      88     113 ..      87     135 .. 0.80
   2 ?    6.2   0.0     0.014       9.4      65      90 ..     317     342 ..     275     354 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.6e-06
                 EEEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnrev 27 
                 +lLvGppGtgK+ la  +++ l+++v
  CDO69466.1  88 LLLVGPPGTGKTALALAISQELGAKV 113
                 89*****************9994443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.014
                 G-SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5  65 egeilvlDEveraesevlnsLlslle 90 
                  + ++++DEv++++ e +  L+ lle
  CDO69466.1 317 VPGVVFIDEVHMLDIECFTYLNALLE 342
                 5789********************98 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   5.1e-06    0.0035       3      65 ..      89     154 ..      87     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.1e-06
      AAA_28   3 vitGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwv.edllafaervleeqle 65 
                  ++G+++tGKT l+ a++++   ++p  p ++ e+++ + +k+e  l+++ ++++ ++++  +e +e
  CDO69466.1  89 LLVGPPGTGKTALALAISQElgaKVPFCPMVGSEVYSTEVKKTEV-LAEAfRRAIGLRIKETKEVYE 154
                 689***************9887778899************99997.555547777777665555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8   2.8e-05     0.019       8     127 ..      83     342 ..      77     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggvkp.............eeillvaftgrAakelrerlaalgae................atTiHrlal 77 
                 ++ + ll++++pGtGKT +  +i ++l +     p              e+l+ af +    +++e  +++++e                 +T+ ++ +
  CDO69466.1  83 FSGRALLLVGPPGTGKTALALAISQELGAKVPFCPmvgsevystevkkTEVLAEAFRRAIGLRIKETKEVYEGEvteltptesenplsgyGKTVSHV-I 180
                 567899*************999999998877665689999999999888888888877777799998888888888777777777777774443333.1 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CDO69466.1 181 vglktvrgtkqlrldpsiyeailkekiqvgdviyieantgavkrvgrsdayassydlesetyvplpkgdvhkkkelvqdvtlgdldaanarpqggqdim 279
                 366777777789999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

      AAA_19  78 ...............ldfddlltealelle...........eaeeekklqeeellivDEfqdvdelqyrLlkallg 127
                                             l+           + +   ++    ++++DE+ ++d   ++ l+all+
  CDO69466.1 280 svmgslvksgrteitE-----------KLRrevnrvvkgyvD-QGVAEV-VPGVVFIDEVHMLDIECFTYLNALLE 342
                 9998876666643221...........222333344446322.222223.45599999999999999998888875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.6e-06    0.0052      49      71 ..      87     109 ..      65     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.6e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +++l+Gp+G+GK+ la a+++e 
  CDO69466.1  87 ALLLVGPPGTGKTALALAISQEL 109
                 689****************9874 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.8e-05     0.026      22      44 ..      85     107 ..      57     138 .. 0.78
   2 ?   -0.6   0.0         1   7.1e+02     106     131 ..     317     342 ..     309     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-05
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlps 44 
                   g  lllvGppG+GKt la ++++
    CDO69466.1  85 GRALLLVGPPGTGKTALALAISQ 107
                   5679**************98876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
  Mg_chelatase 106 hnGvLfLDElpefkrkvlevLRePle 131
                     Gv+f+DE+  ++ + +  L   le
    CDO69466.1 317 VPGVVFIDEVHMLDIECFTYLNALLE 342
                   569*******9988887777766665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.9e-05     0.013      30      65 ..      82     117 ..      73     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                    g   ll+G+pgtGKt+lal ++ ++    p+  
  CDO69466.1  82 KFSGRALLLVGPPGTGKTALALAISQELGAKVPFCP 117
                 5568889***************99877766666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.9e-05     0.027       3      41 ..      89     132 ..      88     160 .. 0.84
   2 ?   -2.1   0.0       5.7     4e+03      71     104 ..     346     383 ..     336     404 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtd 41 
                 llvG+pG+GK+ la  + ++lg     +  + s ++++ +++t+
  CDO69466.1  89 LLVGPPGTGKTALALAISQELGakvpfCPMVGSEVYSTEVKKTE 132
                 79********************8888777788888888777765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.7
      AAA_33  71 rnvildatnlsrrerarflklarrlgvp....vrivvv 104
                 +++++ atn+ ++  +    +   +gvp    +r+++v
  CDO69466.1 346 APTVVLATNRGNALVRGTTDIYAPHGVPvdllDRCLIV 383
                 56788889999988888888888899995555444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00014     0.094       2      25 ..      89     121 ..      88     160 .. 0.76
   2 ?   -0.1   0.0       1.8   1.3e+03       9      25 ..     288     307 ..     285     365 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00014
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.........g 25 
                 ll G+pG+GKt la ++s++lg          +
  CDO69466.1  89 LLVGPPGTGKTALALAISQELGAkvpfcpmvgS 121
                 689**************9998544455555542 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.8
      AAA_18   9 vGKttlakeLskrlgf...g 25 
                 +G t++++ L+++ +    g
  CDO69466.1 288 SGRTEITEKLRREVNRvvkG 307
                 899*******9986334551 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0021       1.5      13      47 ..      76     110 ..      62     134 .. 0.76
   2 ?    3.8   0.0     0.063        43      94     119 ..     318     343 ..     307     350 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
                      HHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  13 eqikkvaktdlsvlitGesGtGKellaraiheask 47 
                      + +k+   +   +l++G  GtGK+ la ai ++  
       CDO69466.1  76 DLVKSRKFSGRALLLVGPPGTGKTALALAISQELG 110
                      4455555556789***************9988654 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.063
                      TSEEEEETGGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqe 119
                       G++f+De++ l++e+ + L  +l++
       CDO69466.1 318 PGVVFIDEVHMLDIECFTYLNALLES 343
                      699***********998888777765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.13      33      58 ..      85     110 ..      74     136 .. 0.84
   2 ?   -0.5   0.0       1.1   7.6e+02     103     117 ..     320     334 ..     312     339 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                 ++ +llvGp GtGKt+++  + ++l 
  CDO69466.1  85 GRALLLVGPPGTGKTALALAISQELG 110
                 6789************9998888876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
       AAA_7 103 vvFvDDlnmpakeky 117
                 vvF+D+++m   e +
  CDO69466.1 320 VVFIDEVHMLDIECF 334
                 89*******988865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00058       0.4      17      41 ..      85     108 ..      75     157 .. 0.78
   2 ?    0.1   0.0      0.79   5.5e+02      90     111 ..     319     340 ..     287     352 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00058
      AAA_30  17 gdrvavltGpAGtGKttalkalrea 41 
                 g r  +l+Gp+GtGKt +  a+ + 
  CDO69466.1  85 G-RALLLVGPPGTGKTALALAISQE 108
                 4.5789**********987777554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.79
      AAA_30  90 tllivDEagmvdtkqlaallka 111
                  ++ +DE+ m+d++ ++ l + 
  CDO69466.1 319 GVVFIDEVHMLDIECFTYLNAL 340
                 5899*******99877666555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0002      0.14       2      29 ..      87     114 ..      86     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                  ++l G++G GKT+L+  + +++ ++ +
  CDO69466.1  87 ALLLVGPPGTGKTALALAISQELGAKVP 114
                 6899*****************9987765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0028       1.9      23      49 ..      84     110 ..      63     118 .. 0.78
   2 ?    1.5   0.0      0.38   2.6e+02     134     145 ..     310     330 ..     264     348 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0028
                 TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierll 49 
                   + +l++ + GtGKT +a+++ ++l 
  CDO69466.1  84 SGRALLLVGPPGTGKTALALAISQELG 110
                 3457889**************999885 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.38
                 S.........EEEEETGGGTT CS
      ResIII 134 d.........viiiDEaHrlg 145
                 d         v++iDE+H l 
  CDO69466.1 310 DqgvaevvpgVVFIDEVHMLD 330
                 24455555669*******775 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00057      0.39      22      40 ..      88     106 ..      74     113 .. 0.83
   2 ?   -2.5   0.0       4.2   2.9e+03      45     110 ..     389     452 ..     386     455 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00057
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 +  +Gp GtGKt la+a+ 
  CDO69466.1  88 LLLVGPPGTGKTALALAIS 106
                 5689***********9976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.2
                 HTTS-SEEEEEE-S--TT----SS---------.TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEG CS
        PhoH  45 kkkkvkriiltrpaveageelGflpgdleekvd.pylrplydaLkdllgaekvekllekgkievapl 110
                 +k+ + +++ +r++ve g +lG  +g le   +    + l  aL+ l+ a+ ++ l  +++ie+ ++
  CDO69466.1 389 EKDAIAKVVQLRANVE-GLKLG--EGVLERLAQkGSDSSLRYALQLLTPASILAGLAGRKQIELEDI 452
                 5677888888888888.66776..3332222220222345555555555666666666666666555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.035        24       2      27 ..      85     110 ..      84     151 .. 0.82
   2 ?    5.0   0.0     0.033        23      62      90 ..     315     344 ..     280     364 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.035
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell 27 
                 +++l+++G+  +GKT l+  + +el 
  CDO69466.1  85 GRALLLVGPPGTGKTALALAISQELG 110
                 5789*************999988776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.033
      AAA_14  62 eekktylflDEiqev.pewekalkslvdeg 90 
                 e    ++f+DE++++  e +++l+ l+++ 
  CDO69466.1 315 EVVPGVVFIDEVHMLdIECFTYLNALLESP 344
                 334568********9448999999999876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00086       0.6      18      41 ..      87     110 ..      78     115 .. 0.89
   2 ?   -0.8   0.0       1.1   7.6e+02      10      41 ..     271     302 ..     264     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00086
  Zeta_toxin  18 lillgGqpGAGKselaellkdele 41 
                 ++ll+G pG GK++la ++ +el+
  CDO69466.1  87 ALLLVGPPGTGKTALALAISQELG 110
                 789****************99985 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdele 41 
                  p++ + ++ ++g    +G +e+ e+l++e++
  CDO69466.1 271 RPQGGQDIMSVMGSLVKSGRTEITEKLRREVN 302
                 46668888999999999**********99984 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.21      46      91 ..      86     132 ..      73     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklrew.lnpvslkepdnqksd 91 
                 r LL+ GP+G gk+     +s+elg k+    + + ++ +++ +k++
  CDO69466.1  86 RALLLVGPPGTGKTALALAISQELGAKVPFCpMVGSEVYSTEVKKTE 132
                 589**********************9985321445555555556555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00042      0.29      20      42 ..      88     110 ..      76     141 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                  l+ GPPGtgKT   +++ ++l 
  CDO69466.1  88 LLLVGPPGTGKTALALAISQELG 110
                 6899*********9999998884 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00054      0.37      18      46 ..      81     112 ..      64     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00054
                 H...TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  18 l...gdvilLeGdLGaGKTtlvrglakalgve 46 
                     g+++lL G+ G+GKT+l+ ++ ++lg +
  CDO69466.1  81 RkfsGRALLLVGPPGTGKTALALAISQELGAK 112
                 13346789*********************986 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00048      0.33      97     136 ..      68     107 ..      63     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00048
   Parvo_NS1  97 vevgqvllawlskqlgkrntvwfyGpantGktnlaeaIak 136
                 +e++ v++  ++++++   +++++Gp+ tGkt la aI +
  CDO69466.1  68 REACGVVVDLVKSRKFSGRALLLVGPPGTGKTALALAISQ 107
                 67888888899999999999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3440.51
//
Query:       CDO69467.1  [L=198]
Description: hypothetical protein BN946_scf184817.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-20   70.7   1.6    1.6e-19   69.9   1.6    1.4  1  CBFD_NFYB_HMF    Histone-like transcription factor (CBF/NF-Y)
    8.4e-13   48.8   0.5    1.7e-12   47.9   0.0    1.7  2  Histone          Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.037   14.4   1.1      0.094   13.0   0.1    2.0  2  CENP-X           CENP-S associating Centromere protein X
       0.06   13.5   0.5      0.091   12.9   0.5    1.3  1  Phage_holin_7_1  Mycobacterial 2 TMS Phage Holin (M2 Hol) Fam
       0.13   12.5   0.1       0.24   11.6   0.1    1.4  1  TAF              TATA box binding protein associated factor (


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   1.6   4.4e-23   1.6e-19       3      65 .]      46     108 ..      44     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 4.4e-23
                    XXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   3 LPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    LP+ar+kk+mksdp++++ia dA++l+ +++e fi e++++A  i++ +kr+t+++++i++A+
     CDO69467.1  46 LPLARIKKVMKSDPEVKMIAADAPILFCKACEIFIAEITARAFIIADSNKRRTLSRADIAKAL 108
                    9************************************************************97 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   4.6e-16   1.7e-12      55     128 ..      36     108 ..       3     111 .. 0.89
   2 ?   -1.4   0.2       0.8   2.9e+03      18      45 ..     139     160 ..     124     172 .. 0.48

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 4.6e-16
                 HHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  55 qkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                 q+  d   + lp aR +++++ks+ e ++i a+a+ ++ +a+E +++e++ +A ++a  +KR+T+ + Di  A+
  CDO69467.1  36 QETPDYRHPPLPLAR-IKKVMKSDPEVKMIAADAPILFCKACEIFIAEITARAFIIADSNKRRTLSRADIAKAL 108
                 55556666779****.******************************************************9997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.8
                 XXXXXXXXHTTS-SSSSB--TTT-XTTH CS
     Histone  18 ekkvsakkerkasskskkkkkrryrpgt 45 
                 +k         a+ +s+++++ r+  ++
  CDO69467.1 139 KKGA------AAQGDSATASHSREDSQQ 160
                 2222......233333333333333333 PP

>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.6e-05     0.094      18      53 ..      63      98 ..      48     115 .. 0.77
   2 ?   -0.8   0.1      0.55     2e+03      58      65 ..     165     183 ..     142     186 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE CS
      CENP-X 18 kItkdalelvaeylklFvrEavaRaaeeaeeegkee 53
                 I+ da  l+ +  ++F+ E  aRa + a++++ ++
  CDO69467.1 63 MIAADAPILFCKACEIFIAEITARAFIIADSNKRRT 98
                59999*********************9888776655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.55
                 ............EECHHHH CS
      CENP-X  58 k...........levedLe 65 
                 +           +++++L+
  CDO69467.1 165 NaaadaenvangVDLDQLQ 183
                 1223333345557777776 PP

>> Phage_holin_7_1  Mycobacterial 2 TMS Phage Holin (M2 Hol) Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   2.5e-05     0.091      50     103 ..     127     180 ..     112     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Phage_holin_7_1  50 lavaavvlrkqikdattaavdkvvkslediqavlaataqaaedelakvkqvald 103
                      ++ a+ +++k +k +++a  d ++ s    +++ a+   aa d    ++ v ld
       CDO69467.1 127 PGSAGQTVGKAQKKGAAAQGDSATASHSREDSQQASLENAAADAENVANGVDLD 180
                      899********************9998777788888777777665555555555 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.7e-05      0.24      22      65 ..      65     108 ..      59     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH CS
         TAF  22 sdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsAL 65 
                 +++a  l  +  e+ + ei+  a       kR++L+ aD+ +AL
  CDO69467.1  65 AADAPILFCKACEIFIAEITARAFIIADSNKRRTLSRADIAKAL 108
                 55666666677788899**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1522.06
//
Query:       CDO69468.1  [L=83]
Description: hypothetical protein BN946_scf184817.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 667.90
//
Query:       CDO69469.1  [L=529]
Description: Laccase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-51  173.9   0.4    3.3e-47  160.6   0.1    2.6  3  Cu-oxidase    Multicopper oxidase
    7.4e-39  132.4   2.3    2.8e-37  127.3   0.2    3.5  3  Cu-oxidase_3  Multicopper oxidase
    5.8e-34  116.8   5.6    8.7e-32  109.7   0.3    3.8  3  Cu-oxidase_2  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.8   1.7e+04     120     135 ..     116     133 ..     109     139 .. 0.62
   2 !  160.6   0.1   5.5e-51   3.3e-47       2     159 .]     166     307 ..     165     307 .. 0.93
   3 !   10.8   0.0   6.8e-05       0.4      83     139 ..     426     487 ..     420     500 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.8
                 EEEEE...-SSSEEEEEEE CS
  Cu-oxidase 120 vlvta...nqapgnYwiva 135
                 +l+++   +q  g++w++ 
  CDO69469.1 116 FLYDFsvpDQ-AGTFWYHS 133
                 5555533344.78888876 PP

  == domain 2  score: 160.6 bits;  conditional E-value: 5.5e-51
                 EEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCE CS
  Cu-oxidase   2 eyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgv 100
                 ++vitl+Dwyh++ak            ++++p+ +d+vling g++ +++a+    +la++tve+gk+yr+r++++s+d++++fsI+GH++t++evDgv
  CDO69469.1 166 STVITLADWYHTAAKL-----------GPAFPLGADSVLINGLGRYTGGNAS----DLAVITVEQGKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGV 249
                 79*********88888...........6789****************99776....8****************************************** PP

                 TTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEEGSSSCHHHHTTSEEEEEEEESTT CS
  Cu-oxidase 101 yvepvevdsldIavGqrysvlvtanqapgnYwivasgrsnlieafengtaaailrysea 159
                 ++ p++vds++I+++qrys++++a++a++nYwi+a   ++   + + g ++ailrys+a
  CDO69469.1 250 NHLPLTVDSIQIFAAQRYSFILNATEAVDNYWIRAI-PNTGTVDTTGGVNSAILRYSGA 307
                 *************************9*********5.4444667799*********986 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 6.8e-05
                 EEEEETSB-EEEEEE....TCETTSEEEESCEEE-TTEEEEEEEEE-S.SSEEEEEEEEGSS CS
  Cu-oxidase  83 lnfsIeGHkltVvev....DgvyvepvevdsldIavGqrysvlvtanq.apgnYwivasgrs 139
                 ++f ++GH+++Vv +    + +y +pv+ d++  ++G   +v + ++  +pg +++++++ +
  CDO69469.1 426 HPFHLHGHTFSVVRSagssEYNYANPVRRDTVSTGTGPNDNVTIRFTTdNPGPWFLHCHIDF 487
                 899***********9999999******************99999995536999999996444 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.2   4.7e-41   2.8e-37       4     118 ..      35     153 ..      32     154 .. 0.92
   2 ?    1.1   0.0     0.062   3.7e+02      46      90 ..     229     274 ..     208     298 .. 0.70
   3 ?    1.3   0.0     0.056   3.4e+02      76     108 ..     462     493 ..     402     499 .. 0.82

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 4.7e-41
                   EEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-....B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEE CS
  Cu-oxidase_3   4 ektvsplggterevitvNgqfpgptievregdtvvvnvtNkl.den....tsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlw 95 
                   +++++p+g+t r +++ Ng fpgp i+ ++gd+ ++nv+ +l +e+    t+ihwhGl q++t+w+DG+++v qcpi++g+sf y f v +qagt+w
    CDO69469.1  35 NADITPDGYT-RAAVLANGVFPGPLITGNKGDNFQINVIDNLsNETmlktTTIHWHGLFQHGTNWADGAAFVNQCPIASGNSFLYDFSVPDQAGTFW 130
                   678999**99.****************************9995332333389********************************************* PP

                   EEE--TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  96 YhshlslqqaaGlaGaiiiedke 118
                   Yhshls+q+ +Gl G+++++d++
    CDO69469.1 131 YHSHLSTQYCDGLRGPLVVYDPD 153
                   ********************985 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.062
                   SS-B-EEEET--S-GG.....GSCS..GGG-B-TT-EEEEEEE--S- CS
  Cu-oxidase_3  46 dentsihwhGlqqrktswmDGvpgv..tqcpiqpgesftyrftvkqq 90 
                   d n++ +++G ++      DGv+++  t + iq  + ++y+f ++  
    CDO69469.1 229 DPNFTFSIDGHNMTII-EVDGVNHLplTVDSIQIFAAQRYSFILNAT 274
                   6677777888777766.789*99863367889999999999987764 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.056
                   -TT-EEEEEEE--S-SEEEEEEE--TTHHHTT- CS
  Cu-oxidase_3  76 qpgesftyrftvkqqagtlwYhshlslqqaaGl 108
                    p++++t rft ++  g  + h h++++  aG 
    CDO69469.1 462 GPNDNVTIRFTTDN-PGPWFLHCHIDFHLEAGF 493
                   57888999999998.899999999988766665 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   1.0    0.0038        23      53     132 ..      81     148 ..      35     153 .. 0.64
   2 ?    0.5   0.0     0.079   4.7e+02      31      73 ..     207     250 ..     193     284 .. 0.81
   3 !  109.7   0.3   1.5e-35   8.7e-32      28     135 ..     399     501 ..     372     503 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0038
                   S.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S-EEEEEEESSHHHHHTT-EEEEE CS
  Cu-oxidase_2  53 l.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfka.dnpGvwllHCHilwHldqGmalqfv 132
                   l + ++H+HG  fq    g++            + +   +   + +g  + + f++ d++G + +H+H+      G+ + +v
    CDO69469.1  81 LkTTTIHWHGL-FQH---GTNW----------ADGAAFVNQCPIASGNSFLYDFSVpDQAGTFWYHSHLSTQYCDGLRGPLV 148
                   36667777776.222...1111..........11223334455666777888888768999999999998666666665555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.079
                   SSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECC CS
  Cu-oxidase_2  31 ntnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgn 73 
                   +  vit+++g++ ++ +   +   + +f ++Gh++ +++ ++ n
    CDO69469.1 207 DLAVITVEQGKRYRFRLVSLSCDpNFTFSIDGHNMTIIEVDGVN 250
                   567999999****9999999988788999999999999877766 PP

  == domain 3  score: 109.7 bits;  conditional E-value: 1.5e-35
                   TTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-T..TEEEEEEEES.S-EEEEEEESSHHH CS
  Cu-oxidase_2  28 fsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvpp..ggwvairfkadnpGvwllHCHilwH 122
                   +s+  ++i++ +  +v   ++n    pHPfHlHGh+f v+ r++g+      ++yn+ npvrrdtv++    +++v+irf++dnpG+w+lHCHi++H
    CDO69469.1 399 HSPPNSTIEISFPITVTNGVTNAPGAPHPFHLHGHTFSVV-RSAGS------SEYNYANPVRRDTVSTGTgpNDNVTIRFTTDNPGPWFLHCHIDFH 488
                   444455555555555555555555559*************.66666......6*************995444************************* PP

                   HHTT-EEEEEEEC CS
  Cu-oxidase_2 123 ldqGmalqfvvrp 135
                   l++G+a++f++++
    CDO69469.1 489 LEAGFAIVFAEDT 501
                   *********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3513.18
//
Query:       CDO69470.1  [L=396]
Description: Glycoside Hydrolase Family 79 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2976.80
//
Query:       CDO69471.1  [L=276]
Description: hypothetical protein BN946_scf184817.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00049   20.5   0.0    0.00079   19.9   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.4e-08   0.00079      56     101 .]      92     138 ..      49     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.4e-08
                   -TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGS..EEEEEEEE-- CS
  2OG-FeII_Oxy  56 vdnslivniGdallflsngryksvlHrVl.pvneger..Rvsiayfiep 101
                   v+++l++ +G     +++g +ks+lHrV  p  e+ +  R+s+ yf +p
    CDO69471.1  92 VNDTLVMVPGTD--TWHGGLLKSNLHRVVpPPGEQGTytRWSLVYFTRP 138
                   567888899988..9**************5555555599*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2086.63
//
Query:       CDO69472.1  [L=355]
Description: hypothetical protein BN946_scf184817.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-17   63.5   0.0      5e-17   62.7   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.4e-13   51.2   0.0      3e-13   50.1   0.0    1.6  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   5.6e-21     5e-17       4     101 ..      22     119 ..      19     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 5.6e-21
      DIOX_N   4 idlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp..sfrGysrlgeektdg.kkldwkesfdlgtel 99 
                 +d + +  ++++++++++l +A++e Gf y++nhgv+ee +d++fe+ +e  +lP+e+K+k+++ +  s  Gy+++g++ td+ + ld  e+++++++ 
  CDO69472.1  22 VDYELI--KQRDQSEIDKLWKAATELGFWYLKNHGVDEE-VDQMFEMGAETMRLPLEDKMKYEQGDagSSFGYKAAGANATDEyGSLDTVEFINVAKDD 117
                 677744..677899**********************886.9*********************77765699*************************9995 PP

      DIOX_N 100 pe 101
                 + 
  CDO69472.1 118 AL 119
                 43 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   3.4e-17     3e-13      19     101 .]     200     286 ..     171     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 3.4e-17
                   ---EEEEEESSSEEEEEEE-TT---EEEETE..EEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGS..EEEEEEEE-- CS
  2OG-FeII_Oxy  19 ilglgahtdaslltillqddvgglevfkdgk..wlrvppvdnslivniGdallflsngryksvlHrVl.pvneger..Rvsiayfiep 101
                   + ++gahtd + l++l++  +ggl+v+  g+  w +++p ++  + n Gda+ ++s+g ++s+lHrV  p +e+ +  R+s+ +f +p
    CDO69472.1 200 KAAIGAHTDFGSLSFLHNR-LGGLQVLVPGTtqWQYIKPIPGHAVCNLGDAMAIFSGGILRSNLHRVVpPPKEQGNyeRWSLVFFTRP 286
                   45699********988876.5*****9665557***********************************6666666699*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2403.72
//
Query:       CDO69473.1  [L=357]
Description: hypothetical protein BN946_scf184817.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-13   51.1   0.0    3.2e-13   50.0   0.0    1.8  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    2.6e-13   50.8   0.0    4.8e-13   49.9   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   3.5e-17   3.2e-13      21     101 .]     200     284 ..      63     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.5e-17
                   -EEEEEESSSEEEEEEE-TT---EEEE..TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGS...EEEEEEEE-- CS
  2OG-FeII_Oxy  21 glgahtdaslltillqddvgglevfkd..gkwlrvppvdnslivniGdallflsngryksvlHrVl.pvneger...Rvsiayfiep 101
                    l +htd + l++l++  +ggl+v+    +kw++v+p ++  i niGdal ++s+g ++s+ HrV+ p  e+     R+s+ +f +p
    CDO69473.1 200 FLNPHTDFGSLSFLHNR-LGGLQVLPPgsDKWYYVKPIPGHAICNIGDALNIFSGGILRSNVHRVMpPPGEQ-AnfeRFSLVFFTRP 284
                   299********988876.5*****9553355***********************************444444.3699*******986 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   5.3e-17   4.8e-13       4     101 ..      22     119 ..      20     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 5.3e-17
      DIOX_N   4 idlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp..sfrGysrlgeektdg.kkldwkesfdlgtel 99 
                 +d + +   + +a++ ++l +A++e Gf y++ hgv+ee ++++f++ r   alP+eeK+++++ +     Gy+++g +  d  + +d+ e+++++++ 
  CDO69473.1  22 VDYQLV--RAGDAEETNKLWKAATELGFWYLKHHGVDEE-VKAMFDMGRSTLALPLEEKLRFEQGDqgFSFGYKAAGMQFMDDnGTRDVTEFLNISKDD 117
                 666633..5778999*********************886.9*********************66654466*********999999**********9995 PP

      DIOX_N 100 pe 101
                 + 
  CDO69473.1 118 AL 119
                 43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2469.79
//
Query:       CDO69474.1  [L=646]
Description: hypothetical protein BN946_scf184817.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4255.84
//
Query:       CDO69475.1  [L=383]
Description: hypothetical protein BN946_scf184817.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-14   54.6   0.0    2.6e-10   40.1   0.0    2.5  2  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
     0.0034   16.9   0.0        0.1   12.1   0.0    2.2  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.1e-05       0.1       6      70 ..      17      81 ..      12      96 .. 0.88
   2 !   40.1   0.0   2.9e-14   2.6e-10     146     299 ..     186     347 ..     174     377 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
                 -SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHH CS
  Meth_synt_2  6 iGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfg 70
                 iGS    +++ + r+e+ +g++s ee ++   e+i+++v+ q ++g+  + +ge+ R      f 
   CDO69475.1 17 IGSLKRPSKLLQKRKEFDSGKCSIEELRQVEDEAIRAIVDLQRQVGIKGITDGEFRRCAQLPLFT 81
                 899999999999*******************************************9988777665 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 2.9e-14
                  HHHHHHHHHHHHHHHHHHHHTT-SEEEEE-T........TSSTT--SSGGGHHHHHHHHHHHHHHHHTTS-TTSEEEEEES-S--CCCH......... CS
  Meth_synt_2 146 aeaaaqialalrdevkdLeaaGikviQiDep........alreGlplkkadwaayldwaveafrldtiaaaddtqvhtHlCyselndil......... 226
                  +e  a+iala ++e++dL aaG+  iQiD+p         +  G+  +  d+aa ld   +a   +  +  +d++v +HlC  ++ + l         
   CDO69475.1 186 DEYFADIALAYQAELQDLYAAGCRNIQIDDPllayfcadSMIRGMEARGIDHAALLDTYIKAYNACLKGRPADMNVGLHLCRGNFRNGLyfseggydr 283
                  56789**************************9998776666778888889*************************************99999999966 PP

                  ...HHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-STSB-BB- CS
  Meth_synt_2 227 ...saiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapkerlwvnP 299
                     +   +++vD   +e       + e l++   ++ v+lG++ ++ pr + ++ + ++            + v+P
   CDO69475.1 284 iaiKLFREINVDCYYLEYDTPRAGTFEPLKHLPPHKAVVLGLISTKFPRLEDVDDLVQR------------ICVSP 347
                  555555799**********9999********************9999998877765444............34555 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.01        91      21      61 ..      31      71 ..      19     104 .. 0.89
   2 !   12.1   0.0   1.1e-05       0.1     173     208 ..     185     220 ..     174     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.01
                 HHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES-- CS
  Meth_synt_1 21 esywkgkiseeeLektakeLrakhwkkqkeagidlipvndf 61
                 +++ +gk+s eeL+++ +e  ++ ++ q++ gi+ i+ ++f
   CDO69475.1 31 KEFDSGKCSIEELRQVEDEAIRAIVDLQRQVGIKGITDGEF 71
                 568899******************************99998 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.1e-05
                  HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGS CS
  Meth_synt_1 173 klellekLlpvYkelleeLkeagvewvqidEPalvl 208
                    e + ++  +Y++ l++L +ag++ +qid+P l++
   CDO69475.1 185 DDEYFADIALAYQAELQDLYAAGCRNIQIDDPLLAY 220
                  5668889999***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2573.90
//
Query:       CDO69476.1  [L=124]
Description: hypothetical protein BN946_scf184817.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 804.39
//
Query:       CDO69477.1  [L=660]
Description: hypothetical protein BN946_scf184817.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-06   26.4  20.0     0.0044   17.4   1.4    3.3  3  zf-C2H2      Zinc finger, C2H2 type
     0.0033   17.8  13.2      0.087   13.3   0.2    3.7  3  zf-H2C2_2    Zinc-finger double domain
  ------ inclusion threshold ------
      0.021   15.6  18.7      0.038   14.8   5.1    3.4  3  zf-C2H2_4    C2H2-type zinc finger
      0.093   13.2   8.4       0.22   12.0   3.6    2.8  2  zf-met       Zinc-finger of C2H2 type
       0.81    9.7   9.8        3.3    7.7   4.0    2.5  2  zf-C2HC_2    zinc-finger of a C2HC-type
        1.1    9.6  10.0       0.67   10.3   3.4    2.5  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   6.7   1.7e-06     0.005       1      23 []     418     440 ..     418     440 .. 0.96
   2 !   17.4   1.4   1.5e-06    0.0044       1      23 []     446     470 ..     446     470 .. 0.96
   3 ?   -3.2   0.1       5.1   1.5e+04      15      21 ..     595     601 ..     593     602 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C++C+k+F+r+s+L  H +tH
  CDO69477.1 418 HCCTHCNKRFNRPSSLAIHVNTH 440
                 57********************9 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.5e-06
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 ++C   +C+++F+ +sn++rH+r H
  CDO69477.1 446 FTCAypGCDRKFNVNSNMRRHYRNH 470
                 899999*****************99 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.1
                 HHHHHHH CS
     zf-C2H2  15 nLkrHir 21 
                  L++H++
  CDO69477.1 595 YLQHHQS 601
                 6999*97 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.8   0.00034         1      12      25 ..     415     428 ..     412     429 .. 0.90
   2 !   13.3   0.2   2.9e-05     0.087       4      25 ..     435     458 ..     432     458 .. 0.85
   3 ?    0.8   1.3      0.25   7.5e+02       1      10 [.     462     471 ..     462     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
   zf-H2C2_2  12 ekpyeCplCdkaFk 25 
                 e++++C  C+k+F+
  CDO69477.1 415 ERRHCCTHCNKRFN 428
                 899**********8 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.9e-05
   zf-H2C2_2   4 rHirkHtgekpyeCp..lCdkaFk 25 
                  H  +Htg kp++C    Cd +F+
  CDO69477.1 435 IHVNTHTGAKPFTCAypGCDRKFN 458
                 5999**********9766999995 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.25
   zf-H2C2_2   1 nLrrHirkHt 10 
                 n rrH r+H 
  CDO69477.1 462 NMRRHYRNHL 471
                 789******6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.6       4.1   1.2e+04       7      21 ..     175     188 ..     170     189 .. 0.57
   2 ?   14.8   5.1   1.3e-05     0.038       1      23 [.     418     440 ..     418     441 .. 0.96
   3 ?    9.9   0.5    0.0005       1.5       1      23 [.     446     470 ..     446     471 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.1
   zf-C2H2_4   7 gksFsskkaLlrHlk 21 
                 +++F   ++  +H++
  CDO69477.1 175 SGTFAQLHT-HTHMR 188
                 455655555.66776 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.3e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C++C+k+F+++++L  H++th
  CDO69477.1 418 HCCTHCNKRFNRPSSLAIHVNTH 440
                 69********************9 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0005
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 f+C +  C++ F+ +++++rH ++h
  CDO69477.1 446 FTCAYpgCDRKFNVNSNMRRHYRNH 470
                 6788888*****98888******99 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.6   7.3e-05      0.22       2      22 ..     419     439 ..     418     441 .. 0.90
   2 ?    2.7   0.2     0.062   1.9e+02       6      21 ..     453     468 ..     452     474 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
      zf-met   2 yCelCnvtfnsesqlksHlqG 22 
                  C  Cn++fn +s+l  H + 
  CDO69477.1 419 CCTHCNKRFNRPSSLAIHVNT 439
                 5*****************985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.062
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C+++fn  s+++ H++
  CDO69477.1 453 CDRKFNVNSNMRRHYR 468
                 9999999999999996 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.0    0.0011       3.3       5      21 ..     420     437 ..     415     439 .. 0.89
   2 ?    4.9   0.3    0.0086        26       6      15 ..     451     460 ..     447     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
   zf-C2HC_2   5 CpkCgRsF.npdrlekHe 21 
                 C +C+ +F  p++l++H+
  CDO69477.1 420 CTHCNKRFnRPSSLAIHV 437
                 6****************7 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0086
   zf-C2HC_2   6 pkCgRsFnpd 15 
                 p+C R+Fn+ 
  CDO69477.1 451 PGCDRKFNVN 460
                 89******86 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.4   0.00022      0.67       4      24 ..     420     440 ..     418     440 .. 0.95
   2 ?    2.6   0.5     0.058   1.7e+02       7      23 ..     453     469 ..     453     471 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
                  BTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSK 24 
                  C +C+K F+  ++l  H++++
   CDO69477.1 420 CTHCNKRFNRPSSLAIHVNTH 440
                  ******************986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.058
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  Cd+ F+  ++++ H++ 
   CDO69477.1 453 CDRKFNVNSNMRRHYRN 469
                  **************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 4282.73
//
Query:       CDO69478.1  [L=450]
Description: hypothetical protein BN946_scf184817.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-23   81.7  10.2    5.6e-05   23.8   1.3    6.6  6  WD40         WD domain, G-beta repeat
    6.4e-07   29.6   0.7        1.8    8.9   0.4    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.014   15.3   0.1        0.4   10.5   0.0    2.7  3  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   9.8e-05      0.58      15      38 .]     184     207 ..     170     207 .. 0.84
   2 !    8.0   0.3   0.00094       5.6       6      38 .]     219     258 ..     214     258 .. 0.80
   3 !   23.8   1.3   9.4e-09   5.6e-05       3      38 .]     264     299 ..     262     299 .. 0.85
   4 !   10.0   0.0   0.00021       1.3       6      34 ..     308     337 ..     303     341 .. 0.81
   5 !   22.0   0.0   3.6e-08   0.00021       1      38 []     345     383 ..     345     383 .. 0.95
   6 !    6.5   0.0    0.0028        17       7      32 ..     393     419 ..     387     420 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                  ++fspd + l++G  D+   iW+
  CDO69478.1 184 WIKFSPDDRRLLTGACDRRALIWN 207
                 578***********77*******8 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00094
                 EEESS.SSEEEEEEETTSSEEEEEET.......TSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsd.......DgtvriWd 38 
                 +l GH  sv +  +s dg+   s++        D + +iWd
  CDO69478.1 219 VLNGHtASVKGAHYSADGRRA-SSTQwtqtspgDYNAKIWD 258
                 689**888************5.54433556666*******9 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 9.4e-09
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 + +tl  Hs+ ++++a++  +  +++GsdD++++iW+
  CDO69478.1 264 LRHTL-EHSGvIWDIAWNAKSLRVVTGSDDKHCKIWS 299
                 56777.597857***99999999*************5 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00021
                 EEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtv 34 
                   + H  +v+ +a+sp+g+ ++s+s  +t+
  CDO69478.1 308 DMRQHpEPVWRIAVSPNGNRVMSASTHCTI 337
                 56789888*************999866666 PP

  == domain 5  score: 22.0 bits;  conditional E-value: 3.6e-08
                 TEEEEEEESSSSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHssv.tslafspdgawlasGsdDgtvriWd 38 
                 g+ ++t++G ++v  ++a+ pdg++la++++ g v +W+
  CDO69478.1 345 GEIQHTFEGADPVmEAVAYFPDGSYLAACGKGGEVLVWN 383
                 5789******9999************************8 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0028
                 EESS.SSEEEEEEETTSSEEEEEETTS CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDg 32 
                  +GH +  t ++fs d+  lasGsdDg
  CDO69478.1 393 MRGHtDRATVVQFSLDSLRLASGSDDG 419
                 5799544666677779999*****998 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.011        65      36      81 ..     177     222 ..     171     247 .. 0.81
   2 ?    2.9   0.1     0.022   1.3e+02      59      90 ..     251     280 ..     216     282 .. 0.82
   3 !    8.9   0.4    0.0003       1.8      28      81 ..     255     314 ..     252     321 .. 0.83
   4 !    5.4   0.0    0.0039        23      40      78 ..     315     353 ..     310     359 .. 0.88
   5 !    6.7   0.0    0.0014       8.6      42      89 ..     359     405 ..     352     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.011
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++++ v  ++++pd++ L  +  d +  + ++e+ + v   +v + 
   CDO69478.1 177 ERQHAVIWIKFSPDDRRLLTGACDRRALIWNVENINNVTVATVLNG 222
                  567788899************************9888877766555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.022
  ANAPC4_WD40  59 dgevrlldaesgkvvhslsvksekavtclgWg 90 
                  d + ++ dae+g++ h+l+ +    +  + W+
   CDO69478.1 251 DYNAKIWDAETGELRHTLEHSGV--IWDIAWN 280
                  55789************987755..8888886 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0003
  ANAPC4_WD40  28 rvwtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++w++      ++ ++++ + ++aW+ +    + + +d ++++ +ae g+++  ++ + e
   CDO69478.1 255 KIWDAetgelrHTLEHSGVIWDIAWNAKSLRVVTGSDDKHCKIWSAEWGELLVDMRQHPE 314
                  5676666666556677888999*****************************999988766 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0039
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                   v  +a +p+g+  + a    ++ l+d+ +g++ h+++ 
   CDO69478.1 315 PVWRIAVSPNGNRVMSASTHCTIFLCDSWTGEIQHTFEG 353
                  67788999***************************9975 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0014
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++a+ pdg+ La   + gev + + ++g+ + +++ +++ + t +++
   CDO69478.1 359 EAVAYFPDGSYLAACGKGGEVLVWNTHTGEALPAMRGHTD-RATVVQF 405
                  678999**************************99998888.4777666 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.065   3.9e+02     135     175 ..     170     211 ..     155     226 .. 0.63
   2 ?   10.5   0.0   6.7e-05       0.4      54     119 ..     266     332 ..     241     374 .. 0.79
   3 ?   -0.1   0.0      0.12   7.1e+02     104     154 ..     359     408 ..     336     412 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.065
                 TEEEEEEE-TT--E.EEE-TTSSEEEEEE-TTT-SSS-EEEE CS
       eIF2A 135 kkkiakaeaanatl.vewspdgryvlTattaprlrvdngfki 175
                    i  +e ++a+  +++spd+r +lT  +  r  + n  +i
  CDO69478.1 170 DGAIVDIERQHAVIwIKFSPDDRRLLTGACDRRALIWNVENI 211
                 444555555555432678888888877777666655555444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.7e-05
                 CCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEES-..-EEEE-TTSSEEEEE- CS
       eIF2A  54 velkkegpihdvaWspkskefaviyGkmpakvslfdlk.vkviskleeqkr..NtiffspkgklvllaG 119
                  +l++ g i d+aW+ ks  + v+ G  +++ ++++ + ++++++++++++    i  sp+g+ v+ a 
  CDO69478.1 266 HTLEHSGVIWDIAWNAKS--LRVVTGSDDKHCKIWSAEwGELLVDMRQHPEpvWRIAVSPNGNRVMSAS 332
                 579999********9876..779**************88888888887765115789999999998875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.12
                 -EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE-TT CS
       eIF2A 104 NtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvewspd 154
                  ++ + p g +++ +G g   Ge+ +w++++ + +  ++     at+v++s d
  CDO69478.1 359 EAVAYFPDGSYLAACGKG---GEVLVWNTHTGEALPAMRghTDRATVVQFSLD 408
                 578889999999999877...89999999987777665411556777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3257.87
//
Query:       CDO69479.1  [L=315]
Description: hypothetical protein BN946_scf184817.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-36  126.3   0.0    1.3e-36  126.0   0.0    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   7.3e-41   1.3e-36       2     231 ..      13     266 ..      12     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 7.3e-41
                 EEEEESSH....HHHHHHHHHEEEEEEEEEE.TTEEEEEEEE..TTEEEEEEE--....SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT- CS
   PNP_UDP_1   2 iaiivgsp....gevellaespleetpfgregrgfkfvtGtl..kgkpvvivstG....iGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGD 90 
                 +++i+gs+    + +  l+e+   etp+g +  +  ++++ l  + k+ +++++G    i ++ +  +a+i++lk++gv+ai++++++G+l++++++GD
  CDO69479.1  13 VGVIGGSGlyhlNNLTILKET-NPETPWGYP--SSPITICALpsGTKVAFLARHGpghtIPPSAVPSRANIAALKSLGVRAILAFSAVGSLREEIAPGD 108
                 689*****9776666666666.*********..8888888888799999******88866666666********************************* PP

                 EEEEEEEEE.SSSCCGCCTHHCC.TCCCCTTSSEE--HHHHHHHHH..............CHHTTTTTEEE.EEEEEESESS-CHHHHHHHHHHTC-CE CS
   PNP_UDP_1  91 vvipddain.fdgrsplygpkee.gqyfpdsydapadpelrallke..............aaealgikvhr.Gvvatadgfyaeteaelrllrrlgada 172
                 +v+p+++i+ + g +p+ +++    + + ++ d+ +  +l++ l++              a++ + + +h+  ++++++g++++t+ae++++r++g d+
  CDO69479.1 109 FVLPTQIIDrTKGVRPASFFEGTsVVAHAAFGDP-FANRLVRWLETrvqkvldnaspdeyAVSGKKPVLHTnKCIVCMEGPQFSTRAESKMYRMWGGDI 206
                 *********9666666555544447888888888.99********998888887777766666666999999*************************** PP

                 EESSHHHHHHHHHHTT--EEEEEEEEETTTBETTCTCH...HCCCHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 173 veMEtaavaqlArelgipfaairvvsdlaaggadaeath..eeveefaqeaaknaaallla 231
                 ++M+  ++a lAre+++ +a i++v+d ++ + ++e+ +  +ev +++ ++ak +  ++ +
  CDO69479.1 207 INMSVLPEAKLAREAELGYALIATVTD-YDSWREGESVVtaAEVFKTLHANAKLSRHVAAS 266
                 ***************************.999999999885555556666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2134.03
//
Query:       CDO69480.1  [L=829]
Description: hypothetical protein BN946_scf184817.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.3   0.1    2.1e-13   50.4   0.1    1.4  1  DUF659    Protein of unknown function (DUF 659)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1   1.2e-17   2.1e-13       1     136 [.     202     337 ..     202     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.2e-17
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkvieevgaen.V..vq 96 
                 Ps++ L+++++  +v+++    +      + + ++i +Dg t +++r+l++f+v+c+++++ ++++d+s+e ktae+l++++ +v+  +  e  V  + 
  CDO69480.1 202 PSRKVLTTRIIPGTVKQYRSIAQ---LACKGKLVTIQCDGFTAANRRHLVSFMVTCERKVYTVRTFDTSTEPKTAENLVKMIYQVMRMLEDEWeVipIA 297
                 78888888888888888855555...588999********************************************************99998751257 PP

      DUF659  97 vitdnasnykkagklleekyptifwtpcaahclnlmledi 136
                 + td + + ++a  ++  ++++++   c+ah++++++ d 
  CDO69480.1 298 ITTDCSGESRAARARILGERSSLVTPDCYAHQVERVVIDY 337
                 7899999999***********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5413.37
//
Query:       CDO69481.1  [L=53]
Description: hypothetical protein BN946_scf184662.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.003   17.6   0.2      0.003   17.6   0.2    1.0  1  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.7e-07     0.003      17      41 ..      12      37 ..       1      51 [. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.7e-07
                SS-S-----BS--EEEEEEEET.TT- CS
      Velvet 17 fgdkdrrpidPppvvqLrvtda.etn 41
                +  kd+rpidPppvv  r +++ + +
  CDO69481.1 12 YATKDKRPIDPPPVVFCRFFEVvDRG 37
                6789***********99998864544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       106  (0.00591221); expected 358.6 (0.02)
Passed bias filter:                       99  (0.00552178); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 398.91
//
Query:       CDO69482.1  [L=165]
Description: hypothetical protein BN946_scf184662.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1178.74
//
Query:       CDO69483.1  [L=82]
Description: hypothetical protein BN946_scf184662.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-22   79.3   7.9    3.5e-22   79.1   7.9    1.0  1  AIP3         Actin interacting protein 3
  ------ inclusion threshold ------
       0.03   14.6   0.0      0.033   14.5   0.0    1.1  1  tRNA_bind_3  tRNA-binding domain
      0.064   13.8   7.1      0.071   13.6   7.1    1.0  1  APG6_N       Apg6 coiled-coil region
       0.07   13.5   3.2      0.082   13.2   3.2    1.0  1  OmpH         Outer membrane protein (OmpH-like)
       0.11   13.2   1.0       0.15   12.8   1.0    1.2  1  KfrA_N       Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   7.9   9.8e-26   3.5e-22     228     301 ..       3      76 ..       1      77 [. 0.95

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 9.8e-26
                 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        AIP3 228 pskkqlesvakeikkakkelkkleeyiktekpvWkkiWekELqkvveeqqfLtlqeeLlaDLkeDlekasevfe 301
                 p+   l++v+ +i++a +el++l+++i+  kp+Wkk+We+E q+++eeqqfL++qee+l+DL eD++++ ev++
  CDO69483.1   3 PKLLLLKKVKGDIESALAELQSLKDHIQMIKPMWKKTWEEEKQNIIEEQQFLQHQEEFLQDLFEDHKAVVEVLN 76 
                 666789*****************************************************************986 PP

>> tRNA_bind_3  tRNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.3e-06     0.033      55     108 ..      15      67 ..      10      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.3e-06
                  TCCCHHHHHHHHHH--S--HHHHHHHCS---HHHHHHHCT-SSHHHHHHHHHHH CS
  tRNA_bind_3  55 leaslaaLqrLleksslelplLrallqqkqsvaeivkqlglsGrKallarlRee 108
                  +e++la+Lq L  + ++  p++++ ++++++ + i +q  l+++ + l+ l e 
   CDO69483.1  15 IESALAELQSLKDHIQMIKPMWKKTWEEEKQ-NIIEEQQFLQHQEEFLQDLFED 67 
                  799************************9988.6677888999999999987555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   7.1     2e-05     0.071      56     117 ..       8      69 ..       4      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
      APG6_N  56 leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellelee 117
                 l+k++ + e++l+eL+ l+++ + ++   ++ +ee+++   ee++f++ + e+  +l e ++
  CDO69483.1   8 LKKVKGDIESALAELQSLKDHIQMIKPMWKKTWEEEKQNIIEEQQFLQHQEEFLQDLFEDHK 69 
                 7899999*********************************************9999988766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.2   2.3e-05     0.082      29      92 ..       9      73 ..       5      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 29 kklqaeleakekelqklqeelqkkakklekeekeqe...lqkkeqelqqkqqqkaqelqkkqqellk 92
                kk + ++e+  +elq+l++ +q  ++ + k++ e+e   + +++q lq  q++  q+l +  +++++
  CDO69483.1  9 KKVKGDIESALAELQSLKDHIQMIKPMW-KKTWEEEkqnIIEEQQFLQH-QEEFLQDLFEDHKAVVE 73
                678889999999*******999777776.56666553446666666666.44444999988877665 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   4.1e-05      0.15      66     113 ..      28      77 ..       8      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
      KfrA_N  66 al..laalwqaaleeaeeelaaaraelqaaraaleaeraeaearveelea 113
                  +  ++ +w++ +ee ++ + ++++ lq++++ l+   ++ +a ve+l +
  CDO69483.1  28 HIqmIKPMWKKTWEEEKQNIIEEQQFLQHQEEFLQDLFEDHKAVVEVLNE 77 
                 336679*****************************999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2151  (0.119973); expected 358.6 (0.02)
Passed bias filter:                      990  (0.0552178); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 622.29
//
Query:       CDO69484.1  [L=126]
Description: hypothetical protein BN946_scf184662.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 898.72
//
Query:       CDO69485.1  [L=803]
Description: hypothetical protein BN946_scf184662.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-78  262.6   1.0    4.1e-78  262.0   0.1    1.7  2  KDZ       Kyakuja-Dileera-Zisupton transposase
  ------ inclusion threshold ------
      0.076   13.2   0.6       0.18   11.9   0.6    1.6  1  SAM_KSR1  SAM like domain present in kinase suppressor RAS 1
      0.085   13.0   0.1       0.44   10.7   0.0    2.2  2  CxC1      CxC1 like cysteine cluster associated with KDZ tran


Domain annotation for each model (and alignments):
>> KDZ  Kyakuja-Dileera-Zisupton transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.0   0.1   6.8e-82   4.1e-78       1     223 []     246     511 ..     246     511 .. 0.95
   2 ?   -2.4   0.1      0.49   2.9e+03      31      69 ..     751     794 ..     707     801 .. 0.51

  Alignments for each domain:
  == domain 1  score: 262.0 bits;  conditional E-value: 6.8e-82
         KDZ   1 fslllamDgNfslkrvak.kseesadprltdgsdyflseeevdkfkdeveek...........................................eeee 55 
                 fs++++mDgN+slkr+ + + ++  d+r++++sdyfl +e++d+f++ev+++                                              +
  CDO69485.1 246 FSRIICMDGNNSLKRLVTtAGRSAGDTRVFEESDYFLLWEFIDHFANEVKSRqaqpkvqlnphahspdcsvpssddksdgedgehaggegdptdgA--T 342
                 6899**********9998666789*************************88899999*********************999999999888777433..3 PP

         KDZ  56 e..spCaerwkaaadeetkkmwkifdetGifavlCrHgfvllladmvksgelakyplalvskllevlgkdlgigYDIgCqfkktlakssllgelakekr 152
                 +   pCa++wkaaa+ee+k++w+ifde G+f+++CrHg++++++dm++s elaky+la+v+k+ +v+g +++i+YDIgC+fk+t+a+s l   +a e+ 
  CDO69485.1 343 TepLPCAKNWKAAAAEEKKRSWGIFDEMGVFVSACRHGIIIWIVDMIRSSELAKYALAMVAKVHQVFGGKVMIAYDIGCTFKETVANSCL-SAEACELG 440
                 367***************************************************************************************.7689**** PP

         KDZ 153 lrflvpafHgyaHnrlCqlryhpnyveglGledgEgcErlfsksnalasstreaspfhrhqaiddhfkhwd 223
                 +rf+v+afHgy+H+++Cq+ +hpn++ g+G+ed+E++Er+f +sn+l++++r+a+p+  h +id hf++wd
  CDO69485.1 441 MRFCVNAFHGYSHSYDCQVVNHPNMIVGMGIEDVEALERVFLASNQLVPVIRYATPYLQHMLIDLHFQQWD 511
                 **********************************************************************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.49
         KDZ  31 gsdyflseee......vdkfkdeveekeeeee...spCaerwkaaade 69 
                 +   f+ +ee      +d+++++ ++     +    +   +w+aa+++
  CDO69485.1 751 RLHTFIHDEEavfvavLDDLQKQNSNM----HstvLDYVRHWRAANAR 794
                 333444444444322222222222222....12344555778777766 PP

>> SAM_KSR1  SAM like domain present in kinase suppressor RAS 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6     3e-05      0.18      55     129 .]     512     589 ..     497     589 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
    SAM_KSR1  55 aereranelqkypelkqWLrvvglsqetlea.ilnkklsleelLkmseeelkqllsevqaeeeelrRl..laAmknLr 129
                  e+ +  +l  y++l q L++v++++  le  +++ +l+ e+l + +eee k +++  + ++ +l+ +  ++A+++Lr
  CDO69485.1 512 HEKYSNLGLMLYNNLVQALNIVNMQAPPLEQtLVALQLTHEDLQRFEEEERKFFVKLHDESDRNLHAItyVEALQELR 589
                 566778899*****************9998615677778777777777776666555554454444331156776665 PP

>> CxC1  CxC1 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.4e-05      0.44      51      76 ..     135     160 ..     106     167 .. 0.86
   2 ?   -1.8   0.0      0.58   3.5e+03      50      83 ..     474     512 ..     471     524 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.4e-05
        CxC1  51 rllalGylasspvkpqtaFslpllil 76 
                  l+++Gyl+ spv+p+ a sl+ l l
  CDO69485.1 135 ALVRRGYLGNSPVNPSLAVSLKTLEL 160
                 5899******************9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.58
        CxC1  50 vrllalGylasspvkpqtaFslp.....llilhnslWnk 83 
                 v+ l++ +las    p   ++ p     l+ lh + W++
  CDO69485.1 474 VEALERVFLASNQLVPVIRYATPylqhmLIDLHFQQWDH 512
                 667888899999999988887772222234456666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5519.21
//
Query:       CDO69486.1  [L=375]
Description: hypothetical protein BN946_scf184662.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   15.1   0.0       0.04   14.2   0.0    1.5  1  Cauli_VI  Caulimovirus viroplasmin


Domain annotation for each model (and alignments):
>> Cauli_VI  Caulimovirus viroplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-06      0.04       2      44 .]      83     126 ..      82     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-06
    Cauli_VI   2 yYAVakGrepgiY..ttWdecqkqvkgfpgakyKsFktraeAeaf 44 
                 yY++  G e+gi+    W+  +  v   ++ ++K+F  +a+A +f
  CDO69486.1  83 YYTICYGVETGIFigFQWQRISHLV-PAKKHVFKGFHDLAQALEF 126
                 9************777999999888.7899************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2637.83
//
Query:       CDO69487.1  [L=399]
Description: hypothetical protein BN946_scf184662.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.084   13.3   0.6       0.38   11.2   0.3    2.1  2  HMG_box   HMG (high mobility group) box
        1.5    7.8  10.3        3.2    6.7   9.9    1.8  2  DEC-1_N   DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   4.3e-05      0.38      29      48 ..      51      70 ..      44      71 .. 0.90
   2 ?   -0.8   0.0      0.24   2.2e+03       8      26 ..     140     158 ..     137     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
                HHHHHHHHHHHHHSHHHHHH CS
     HMG_box 29 aeiskklgekWkalseeeKk 48
                a++ k l+++Wk++s+eeK 
  CDO69487.1 51 ANLIKDLAARWKDMSPEEKS 70
                6899***************7 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHSTTS CS
     HMG_box   8 fflfskeqraklkaenPel 26 
                 ++++ +++ ++++a  ++ 
  CDO69487.1 140 YVFYTNDHIPQFVASATGK 158
                 99**********9987765 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.12     1e+03     169     233 ..     147     206 ..     131     219 .. 0.70
   2 ?    6.7   9.9   0.00035       3.2     113     148 ..     275     312 ..     251     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.12
     DEC-1_N 169 qlpavpaipagtldflaqlrqflpglaaasqaaaGsdaqasdisevrvrpeipyeqeaqlkikta 233
                 ++p   a ++g+ + l +++ + p +a   +++  + +  sdi +++ +      ++ ++k+k a
  CDO69487.1 147 HIPQFVASATGKKETLHKFAILSPTVADS-PGSEVAHSHHSDILQLKAQVR----DLIEMKLKQA 206
                 56777777888888999999999996554.444455888899887766554....5555666655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00035
     DEC-1_N 113 lGaa..apapalaaapppapapvpddpapapaapqaaa 148
                 lGa+   p+p l++ ppp+ ap+p +pa a ++  +aa
  CDO69487.1 275 LGATapPPLPPLSSVPPPPIAPTPSKPAAASSSSAPAA 312
                 566613468889***************88776654442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2972.66
//
Query:       CDO69488.1  [L=494]
Description: hypothetical protein BN946_scf184662.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3718.00
//
Query:       CDO69489.1  [L=318]
Description: hypothetical protein BN946_scf184662.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2266.21
//
Query:       CDO69490.1  [L=510]
Description: hypothetical protein BN946_scf184662.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-10   39.7   0.0    7.6e-10   38.7   0.0    1.6  1  RT_RNaseH_2     RNase H-like domain found in reverse transcri
    1.4e-09   38.2   0.0    3.2e-09   37.0   0.0    1.6  1  RT_RNaseH       RNase H-like domain found in reverse transcri
    1.8e-09   37.6   0.3    3.6e-09   36.6   0.3    1.5  1  Integrase_H2C2  Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.3e-13   7.6e-10      10      95 ..       2      91 ..       1      97 [. 0.87

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.3e-13
  RT_RNaseH_2 10 eklkealtsapvLahpdpdkp..filetDaSdtgigavLsqedddgk..erpiafaSrklskaernysttekellAivwalkkfrhyllg 95
                 e+lk+al ++p L+  +++ p  +il++D S  ++g  L q d+++   ++   f S +l+++e + s+ ++el+++++al+  + yl g
   CDO69490.1  2 EDLKQALLESPALHAINYKSPvpVILAVDTSYIAVGYHLAQCDEQKPqiHYYSRFGSITLNERESHFSQPKLELCGLFHALQATKLYLIG 91
                 78*************9999752279*******************876444555566679*****************************98 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   5.4e-13   3.2e-09       5     103 ..      24     127 ..      21     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 5.4e-13
                 -EEEEEEECTEEEEEEEEEETTE....EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--EEEE-SS--TTTTT----...---HHHH CS
   RT_RNaseH   5 pfiletDAsddgigavLsqreedge..erpiafaSrklsgaernystiekellAivaalkkfrhylqg.rkftvitDhknlkyllskks..lngrlarW 98 
                 p+il +D s +++g  L q +e++   +    f S +l++ e+ +s+ ++el+++ +al+  + yl g  +  v  D +++k +l++ +   ++ ++rW
  CDO69490.1  24 PVILAVDTSYIAVGYHLAQCDEQKPqiHYYSRFGSITLNERESHFSQPKLELCGLFHALQATKLYLIGiCNLVVKVDARSIKGMLNNPDlaPSASMNRW 122
                 789****************66666566888899999********************************999**************9888433599**** PP

                 HHHC- CS
   RT_RNaseH  99 aleLs 103
                  l + 
  CDO69490.1 123 ILAIL 127
                 98765 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.3   6.1e-13   3.6e-09       7      42 ..     220     255 ..     214     257 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 6.1e-13
  Integrase_H2C2   7 keilkeaHdsagHlGiektlerlrrryyWpgmrkdv 42 
                      +il++aHd++gH G+  t + + +r++Wp+m++dv
      CDO69490.1 220 LDILRAAHDHLGHRGRYVTSQFVGKRFWWPTMQEDV 255
                     68*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3579.38
//
Query:       CDO69491.1  [L=333]
Description: hypothetical protein BN946_scf184662.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2247.94
//
Query:       CDO69492.1  [L=255]
Description: hypothetical protein BN946_scf184662.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-05   25.4   0.0    1.6e-05   24.7   0.0    1.3  1  DUF4939         Domain of unknown function (DUF4939)
     0.0022   18.2   0.0      0.013   15.7   0.0    2.2  3  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.8e-09   1.6e-05      55     104 ..      32      86 ..      19      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.8e-09
     DUF4939  55 ktfssdalkvtflitrltGealewvlpyi....kkdsp.llndyraflaemkrvf 104
                 +tf+s+  kvt+ i+ l+G al+w  py+      + p +++ y af +e+   f
  CDO69492.1  32 RTFNSNEKKVTYTISFLKGTALQWFEPYLlegaTDNPPlFMSSYEAFQDELHANF 86 
                 69**************************943322334424789*****9999887 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06     0.013       4      47 ..      45      90 ..      42     100 .. 0.86
   2 ?   -1.0   0.0      0.24   2.1e+03      73      94 ..      92     111 ..      89     113 .. 0.86
   3 ?   -0.6   0.0      0.18   1.6e+03      30      58 ..     109     136 ..      95     158 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-06
  Retrotrans_gag  4 stslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkd 47
                     ++l+g A++w++++  +  ++     ++s++ ++++++++f p   +d
      CDO69492.1 45 ISFLKGTALQWFEPYLLEGATDnpplfMSSYEAFQDELHANFRP---YD 90
                    579***********998888878********************9...33 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.24
  Retrotrans_gag  73 ladqldevlteeakiekflaGL 94 
                     l++q++  + ++ ++ +f++GL
      CDO69492.1  92 LVTQVR--WGNAPLQYRFYDGL 111
                     788899..999999*******9 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.18
  Retrotrans_gag  30 kdlkkaflktflpserkdqleeelsslrQ 58 
                     + l ++++++  +  +k ++ + l++l Q
      CDO69492.1 109 DGLPNHLKDRISE-VEKPTTLNALRDLAQ 136
                     4455555555555.555556666777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1844.77
//
Query:       CDO69493.1  [L=406]
Description: hypothetical protein BN946_scf184662.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-30  104.6   0.1    8.5e-30  103.9   0.1    1.3  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    1.1e-16   60.7   0.0    2.4e-16   59.6   0.0    1.6  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    3.7e-07   30.4   0.0    6.4e-07   29.6   0.0    1.4  1  RT_RNaseH    RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.1   1.4e-33   8.5e-30       2     222 .]     115     274 ..     114     274 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 1.4e-33
                 E-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.. CS
       RVT_1   2 pKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptk 100
                 +Kk+    R + +l+vdy+ lnk++ k         +++++p + +              l+  +ka++++k+Dl+ a++ v  +  ++ +taf++   
  CDO69493.1 115 KKKD----RSL-QLCVDYRGLNKITRK---------DCYPLPLILDL-------------LDTPRKARIYTKIDLRHAYNLVCIAPGDEWKTAFRTC-- 184
                 5555....444.5668***********.........***********.............889**********************************.. PP

                 .......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BE CS
       RVT_1 101 linliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkin 199
                                        +g++e+ ++p+G+ ++P+ f++f+n+++ +l      v +++Y DDili+s+++e++ e++++v ++ ++++l  +
  CDO69493.1 185 -----------------------YGSFEWLVMPFGLSNAPAAFQRFVNDIFSDLLD----VCVVVYLDDILIYSDTPEKHREHVKEVLRRPRKNKLYAQ 256
                 .......................9*******************************8....9************************************** PP

                 GGG-EEE.....ESSEEETTEEE CS
       RVT_1 200 peKtklvlftvkseevkyLGvtl 222
                 ++K+k+      +++++yLG++l
  CDO69493.1 257 ADKCKFH-----TTSIEYLGYIL 274
                 *******.....9*******975 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   4.1e-20   2.4e-16       2      67 ..     338     403 ..     337     406 .] 0.96

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 4.1e-20
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklsk 67 
                  +ee+++ f++ k+a+t+apvL+h +pd p+++etD S+++i+++Ls + + g+++piaf Sr++ +
   CDO69493.1 338 SEECRTVFNTFKRAFTTAPVLHHWEPDCPLTVETDTSNYAIAGILSLTTESGELHPIAFHSRTFYP 403
                  79************************************************************9865 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.1e-10   6.4e-07       2      42 ..     363     403 ..     362     406 .] 0.93

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.1e-10
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--H CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsg 42 
                 p+ p+++etD s+++i+++Ls ++e+ge +piaf Sr++ +
  CDO69493.1 363 PDCPLTVETDTSNYAIAGILSLTTESGELHPIAFHSRTFYP 403
                 67899********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3070.19
//
Query:       CDO69494.1  [L=353]
Description: hypothetical protein BN946_scf184957.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.19   11.0   5.2       0.32   10.3   5.2    1.4  1  DUF4407          Domain of unknown function (DUF4407)
       0.87    8.3   2.5        1.3    7.7   2.5    1.4  1  Presenilin       Presenilin
        1.6    8.5   7.4        2.7    7.7   7.4    1.3  1  ATP11            ATP11 protein
        2.1    7.7  10.6        4.1    6.7  10.6    1.4  1  U79_P34          HSV U79 / HCMV P34
        2.8    8.2   8.8        4.2    7.7   8.8    1.3  1  DUF755           Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.2   8.9e-05      0.32     147     206 ..       5      64 ..       2     155 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.9e-05
     DUF4407 147 aeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakl 206
                  +++++e++l++l++++++e++ ++++++ ++++++++a++kk+++ + + e +++++  
  CDO69494.1   5 DAVKQLEQQLEQLKKKVTEEAEHKRQQEEAARKREEERAQAKKRKAPESDDESDSAQEVE 64 
                 567777888888888888888877777777777777777777777777777777776653 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.5   0.00037       1.3     266     313 ..      22      61 ..       2     173 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00037
  Presenilin 266 aqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeee 313
                 ++++e+++++ee++++ e+        ++++++++++ e+++e+++++
  CDO69494.1  22 TEEAEHKRQQEEAARKREE--------ERAQAKKRKAPESDDESDSAQ 61 
                 1111111111111111111........111111111111111111111 PP

>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.4   0.00075       2.7      19      69 ..      11      60 ..       3      79 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00075
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       ATP11 19 lesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekk 69
                 +++e+Lk+++++++e+kr++++a++++e++ +++k+++a++s +e+  ++
  CDO69494.1 11 EQQLEQLKKKVTEEAEHKRQQEEAARKREEERAQAKKRKAPESDDESD-SA 60
                4689***************99966554444333333333333333222.22 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.6    0.0011       4.1     157     206 ..      16      65 ..       2      74 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0011
     U79_P34 157 deqrkrsgkqkekrkvedidkkkedekrkeeerkksdedkssdkkeelde 206
                 + ++k +     kr+ e+  +k+e+e+ +  +rk  ++d +sd+++e+++
  CDO69494.1  16 QLKKKVTEEAEHKRQQEEAARKREEERAQAKKRKAPESDDESDSAQEVEQ 65 
                 223333444556788899999*****9999***************99876 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.8    0.0012       4.2      51     107 ..       4      58 ..       1      66 [. 0.60

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
      DUF755  51 tsqLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrnvssrsakkksakkrkksss 107
                 t  ++ql qql+q k+k ++e +++ q+++  +k++++  + +akk++a  +  +s 
  CDO69494.1   4 TDAVKQLEQQLEQLKKKVTEEAEHKRQQEEAARKREEE--RAQAKKRKAPESDDESD 58 
                 77789999999776677777777777777777777775..33334433333322333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2776  (0.154833); expected 358.6 (0.02)
Passed bias filter:                     1375  (0.0766914); expected 358.6 (0.02)
Passed Vit filter:                       290  (0.0161749); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 2544.78
//
Query:       CDO69495.1  [L=87]
Description: hypothetical protein BN946_scf184957.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.032   14.1   0.0      0.046   13.6   0.0    1.2  1  MEF2_binding  MEF2 binding


Domain annotation for each model (and alignments):
>> MEF2_binding  MEF2 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-06     0.046       8      20 ..      19      31 ..      17      34 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.6e-06
  MEF2_binding  8 SISEETKQKLKsv 20
                  SISEET+Q L++ 
    CDO69495.1 19 SISEETRQYLRNF 31
                  9*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 659.92
//
Query:       CDO69496.1  [L=935]
Description: hypothetical protein BN946_scf184785.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.9   0.1    2.5e-13   50.1   0.1    1.3  1  DUF659    Protein of unknown function (DUF 659)
  ------ inclusion threshold ------
       0.74   10.4   4.2       0.39   11.3   0.3    2.2  2  DUF1645   Protein of unknown function (DUF1645)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   2.8e-17   2.5e-13       1     136 [.     310     445 ..     310     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 2.8e-17
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkvieevgaen.V..vq 96 
                 Ps++ L+++++  +v+++    +      + + ++i +Dg t +++r+l++f+v+c+++++ ++++d+s+e ktae+l++++ +v+  +  e  V  + 
  CDO69496.1 310 PSRKVLTTRIIPGTVKQYRSIAQ---LACKGKLVTIQCDGFTAANRRHLVSFMVTCERKVYTVRTFDTSTEPKTAENLVKMIYQVMRMLEDEWeVipIA 405
                 78888888888888888855555...588999********************************************************99998751257 PP

      DUF659  97 vitdnasnykkagklleekyptifwtpcaahclnlmledi 136
                 + td + + ++a  ++  ++++++   c+ah++++++ d 
  CDO69496.1 406 ITTDCSGESRAARARILGERSSLVTPDCYAHQVERVVIDY 445
                 7899999999***********************9988765 PP

>> DUF1645  Protein of unknown function (DUF1645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   4.4e-05      0.39      43     105 ..     130     248 ..      87     249 .. 0.66
   2 ?   -0.7   0.4       0.2   1.8e+03      29      79 ..     768     819 ..     734     846 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.4e-05
     DUF1645  43 ee..ergrdlklrsrsv......rrkarslsPlrv..................................................ettpsasassasss 83 
                 ++   r   +  rs++       ++ + s+ P  v                                                  + ++ +++ sa +s
  CDO69496.1 130 NNlsPRANRRAERSAAAhfaasnAQYSSSMVP--VaypgvlveasaattsgpggslatslpplfipdapgpstgspfslapsiggSPYSFPNQWSAHPS 226
                 11332222222222222444444555566666..24588888888888888888888899999999999999999999999998855555556677778 PP

     DUF1645  84 psssssssssssssskrWrLkD 105
                 p++s+s s sss++s  WrL+D
  CDO69496.1 227 PTPSPSPSVSSSQGSGLWRLRD 248
                 77777777777779*******9 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.2
     DUF1645  29 eeeeeeeeeee.aeeeeergrdlklrsrsvrrkarslsPlrv.....ettpsasass 79 
                 +e   + ++e+ ++++++r +  + ++ +++r+  s +Pl +     e     s++s
  CDO69496.1 768 AELRLHLRDEQvRKDAKKRLKRHFGERVAQARAQSSNAPLEApadddE-----SNGS 819
                 444445555554555667777776666666788888888776444331.....2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 6127.64
//
Query:       CDO69497.1  [L=118]
Description: hypothetical protein BN946_scf184785.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-37  129.0   0.0    2.4e-37  128.8   0.0    1.0  1  K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   1.4e-41   2.4e-37       3      97 ..      13     117 ..      11     118 .] 0.93

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 1.4e-41
  K_oxygenase   3 lDligiGiGpsnLsLailleevk..........kelkalflerqpefaWhpgmllegaelqisfLkDlvtlrdPtspfsFlnYlkekgrLykFlnlet 90 
                  +D+ig G+Gp+n+++a ++ e+              ++lf+e+qpef+Whpgmll+++++qisfLkDl+tlr P+spf+Fl+Yl++++rL +F+n+ +
   CDO69497.1  13 YDVIGLGFGPANIAIAGAIVEKWansntgsshaPLQQVLFIEKQPEFRWHPGMLLPNSRMQISFLKDLATLRSPQSPFTFLAYLHSQDRLLNFINRGS 110
                  9***************88777666889999886567899*********************************************************** PP

  K_oxygenase  91 flpsRke 97 
                  f+p+Rke
   CDO69497.1 111 FTPTRKE 117
                  *****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 804.19
//
Query:       CDO69498.1  [L=744]
Description: hypothetical protein BN946_scf184785.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-86  290.5   0.0      2e-86  290.2   0.0    1.1  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2   0.0   1.1e-90     2e-86       4     423 .]     259     672 ..     256     672 .. 0.87

  Alignments for each domain:
  == domain 1  score: 290.2 bits;  conditional E-value: 1.1e-90
                  HHHHSTTSEEEEE...........CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHH CS
  AMP-binding   4 qaaktpdkvalvd...........sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayil 90 
                  qaa++p  va+ +           s + +t+TY el++++n+lA++Lr+ Gv++g+ +a+++++ + + +++++il+aGa +vp++++l++e+ ++i 
   CDO69498.1 259 QAAQQPHNVAVRWygdlstdgpieSYSAETITYVELNRQANQLARWLRQVGVENGNAIAVCMKRDVWFHISFIGILRAGACYVPIDAELPEERQQFIA 356
                  8999*******88999999999998999********************************************************************** PP

                  HHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHH CS
  AMP-binding  91 edseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanv 188
                  +ds+a++++  +      + l++ a+l   +++i +++ +++k+    ++++ +      +e++ ++pdd+ yi+YTSGTTG+PKG++l++r l+ ++
   CDO69498.1 357 RDSGARYIL-ST------SDLPCFASL--GDITIDIKDPSVRKA----IDQQRA------DEVALANPDDTSYILYTSGTTGTPKGCILTQRGLSEAI 435
                  *********.32......344677765..334444454443333....333222......1344689******************************* PP

                  HHHH..HHHC.SCCTT..T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCC CS
  AMP-binding 189 aslk..letr.fklke..ddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakd 281
                  ++++  + +   +  +  +  +lsi+++a+++ + +e+l++l+ G  +  +p++  l+   l  +i++l+v+++  vP+++ea + + +++  +++  
   CDO69498.1 436 WAISaiCANVeLE--DpsQGNYLSIASVAFDVHI-AEVLVPLALGIPILSAPRSLLLE--DLPYYIKHLRVSHVGIVPSLIEATMGAVQED--EESGH 526
                  *999854333333..23589*************7.***********999999887754..4678******************997743333..34567 PP

                  GTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBT CS
  AMP-binding 282 lsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYl 379
                    slr++ +gge++s  +l+++ ++ + ++ + YG++E t+ ++ ++ +++++ +  +G  +++v +++vDe+ ++ + +g +Gel+v gp v +gY 
   CDO69498.1 527 ATSLRYIASGGEKMSDVILDKWASHPKVRLANFYGPSEVTIGCA-ARFMDKDTPRANIGHTFANVGAYVVDEN-MNIILRGGTGELVVEGPLVGRGYV 622
                  889**********************888***************9.777888888899***************9.99999******************* PP

                  T-HHHHHHHEEE.....TCC.EEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 380 kkpeataeafds.....egr.wlrTGDlgrldedGyleivgRkkdliklr 423
                  ++p++t+++f +      +r  +rTGDl+r+ +d +lei+gR++ +iklr
   CDO69498.1 623 GRPDLTQKVFMKfpndgTERwAYRTGDLVRMMPDATLEIIGRIDTQIKLR 672
                  **********988887526868**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5215.58
//
Query:       CDO69499.1  [L=1620]
Description: hypothetical protein BN946_scf184785.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-94  315.6   0.0    9.1e-35  120.2   0.0    3.2  3  Condensation   Condensation domain
    1.3e-34  118.3   0.7    6.3e-10   39.3   0.1    3.9  3  PP-binding     Phosphopantetheine attachment site
  ------ inclusion threshold ------
       0.12   12.1   0.2       0.28   10.8   0.0    1.6  2  Polyoma_coat2  Polyomavirus coat protein
       0.13   10.9   0.0         26    3.3   0.0    3.3  4  Transferase    Transferase family


Domain annotation for each model (and alignments):
>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0     2e-38   9.1e-35      31     437 ..     116     495 ..     113     511 .. 0.79
   2 !  102.0   0.0   6.7e-33     3e-29       5     441 ..     647    1053 ..     644    1058 .. 0.84
   3 !   89.5   0.0   4.3e-29   1.9e-25      27     321 ..    1211    1493 ..    1191    1503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 2e-38
                   EEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EE..EE-T..TSSSHHHHHHHHHHHHHTC--..SCCCS-SEEEEE CS
  Condensation  31 avlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelev..leisdleeseeeeaieefaqkdlqepf..dLekgpLfraal 123
                   +v++l +e  ++ l+ a++ l ++h+ LRtvf  +   e vQv+l    +++++   e++ +++ + +++  + +   +++++   +++ p+++ + 
    CDO69499.1 116 VVMRLASETSIDGLQAAWKDLATHHEMLRTVF--HFGSELVQVVLRPHAIQWQFprREVQGVSDAAFQSHFTSDLGPSIAREInsAISRTPPVQLSF 210
                   7999****************************..458********777777755115556666666555533333333444441157888******9 PP

                   EESST.TEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---BSS--- CS
  Condensation 124 fkiae.nrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkdkarpa 219
                   f   e +  +++ls+HH + DG+Sl++ll+dl ++Y     g++ +lp+ +  +  +e+   + +s+    ++++W+  leg  p   L+++   +a
    CDO69499.1 211 FVAPEpSMTYMVLSIHHALYDGISLPVLLEDLERAY-----GQQQQLPSAP-LRAIVERIVTIDQSA----AREFWTSHLEG-FPWQRLLNK---SA 293
                   98655166799*************************.....5554554444.667888866666666....99*********.665668888...56 PP

                   SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHH.HHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHH CS
  Condensation 220 krsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllL.skytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfseli 315
                   ++s+  d +s+++ ++  ++l++ a+e +vtl+ +l++a+g lL +++   dd+v+g++ +gR  +i++i++++   + ++P ri+  +++   +++
    CDO69499.1 294 SSSTA-DVTSVAF-KHSFSQLQSKAAERHVTLQALLMSAYGYLLgHRLYDYDDVVFGVIRAGRSLPIDNIDTTICPMITVVPARIRFGASE---SVL 385
                   66665.8889999.556678999999******************679****************************************8888...889 PP

                   HHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE....E.....SSEEEEEEE..TTSSEEEEEE CS
  Condensation 316 krvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssve.aeeeskydlslease..tngkltikie 409
                   + v++d+ ++ + + +pl +++k + +        Lfd+ fs  +        +++++s+l      +e ++ e +y l++e++   +++++  + +
    CDO69499.1 386 QVVQRDIARVSEFEHIPLSRIQKWVPEGGG----SLFDTLFSV-S-------FKQHDRSSLWSV---IEsQNPEPDYILAVEVVLdpEQNQIVAHAA 467
                   99999****************999997775....6********.5.......233344433333...333456677777666665459999999999 PP

                   EETTTS-HHHHHHHHHHHHHHHHHHHHS CS
  Condensation 410 YntslFdeetierflerlkelleqvieh 437
                   Y+ +  ++  ++++l+rl+e+  q++e+
    CDO69499.1 468 YTPEDISSTIVSEILQRLEETAIQLVED 495
                   *999999999999999999887777665 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 6.7e-33
                    EEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE...TTEEEEEE-TT-----EEEE-T..TSSSHHHH CS
  Condensation    5 yplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfle.eengepvQvileerevelevleisdleeseeeea 98  
                     p + +Q +m+  + ++ + + y++ + l+l + ++++rl+ a++e ++  d+LRt+f      g+    +++   +++     +  +  +  e 
    CDO69499.1  647 FPTTTLQAGMLS-QTVSSGGRLYVHLFPLRLAKDVNVSRLRGAWEEAVSSLDILRTSFHFlPGPGRWAAAVHSIGVLHWSESAYE--ASANLAES 738 
                    578999999986.5566699**************************************544456666667777777777555555..33334566 PP

                    HHHHHHHHHTC--SCCCS-SEEEEEEESS..TTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHH CS
  Condensation   99 ieefaqkdlqepfdLekgpLfraalfkia..enrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdl 191 
                    ++ f++  ++ + +  ++p++   l+k    ++++ll++ +HH + DG S+  ll + ++lY    +g  +p ++      + e + q l ++  
    CDO69499.1  739 LNPFLR--VSDESEFFREPPVYLNLLKAMnpDESDLLVVVLHHALYDGLSIAKLLHSVQRLY----SGLGTPVGSR-----FYEVLPQLLWQE-- 820 
                    999999..7888899999***9999996433799****************************....6666555433.....344556667676.. PP

                    HHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCST CS
  Condensation  192 ekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseik 286 
                    +   ++W e+l+  l  + +p++ ++  + ++ + + ++++   t e+l ++++  +vt + + +aa++ lL  +t++ d+v+g ++sgR  +  
    CDO69499.1  821 KHGTDFWVERLKD-LHAAPIPRK-PSVVSATVFQASRRMDI---TSEELGQACRHAEVTPQCLGQAAFAKLLAILTRSPDVVFGRVVSGRDVP-- 908 
                    67899*******8.777789999.66666666656666666...8999*********************************************.. PP

                    CHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH.CCCEEECCCCSEEECE CS
  Condensation  287 diermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq.eseeeesqlselklsv 380 
                    + e+++G  +ntlP r+  +++ +   l++++ ++ + ++  q + l ++ ++l +        L d+ f+f+    q   e+e+ +l +++ + 
    CDO69499.1  909 GTEEVIGPMLNTLPCRVSFAGERSNKALLQNIHQHNVASMAWQHVSLRSIHRRLGVSS------LWDSLFVFQP--RQeSFESEADRLWTFDAG- 994 
                    **************************************************99998666......9*******98..442445555555566666. PP

                    E....E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSB CS
  Condensation  381 ssve.aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqk 441 
                       + +e   +y+l+le+ e+ ++  ++++ ++++ d e+++ f +r+++ll+ +i   +++
    CDO69499.1  995 ---NpDEISVQYALNLELHEEANGYVVQVACTSEVADAEELKAFVDRYVQLLSTLIHRLDDF 1053
                    ...22567789*******************************************99887765 PP

  == domain 3  score: 89.5 bits;  conditional E-value: 4.3e-29
                    TEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE...TTEEEEEE-..TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-S CS
  Condensation   27 ynmqavlklegeldlerlekalqelierhdaLRtvflee.engepvQvil..eerevelevleisdleeseeeeaieefaqkdlqepfdLekgpL 118 
                    + + +  +l   +d + l++a+  li+rh +LR +f+++   g+p++ +   e+ + ++    ++  +++e e+ + +++  ++++p  ++  p 
    CDO69499.1 1211 FQHVFGYRLPAHIDNKKLRNAWMGLIRRHAILRSTFVHDrVAGTPRLLVFkpEALDSSWSEDTLE-PSDRELEDVVARMKA-QVSNPRPVS-RPI 1302
                    444444578899**************************646799998887566666666444444.566766665555555.588887775.689 PP

                    EEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S.- CS
  Condensation  119 fraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.YkdyaeweqqyleskdlekeeaYWseqlegelpvlq.L 211 
                     ra l+  +e +l+ll+ +HH   D++Sl++++ dl++lY    +gee++++++ + +      ++ +l+ ++ + +++YW+ +l+  +pv + L
    CDO69499.1 1303 TRAVLLC-SEGSLYLLIHLHHFQYDAWSLQLIIDDLTRLY----EGEEPRSSNDLDsFL-----RSVVLTPEAEKVQRSYWRSTLAA-MPVPAlL 1386
                    9999998.9*******************************....999999988876677.....3466788888999*********8.7777756 PP

                    --B.SS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE- CS
  Condensation  212 pkd.karpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridv 305 
                    p+  +a+   +++   +     + + ++kl+kl +e +v+l+++lla ++ + sky ++d + +++  sgR+  +kdier     +n lP  +  
    CDO69499.1 1387 PPMpNAPMVPERYV-YTNYA--ALSDAAKLEKLSRELSVSLQNILLASWAQVQSKYAQSDVATFSLWHSGRTGDVKDIERLAVPCINSLPYSVSG 1478
                    66633334444444.33333..4478999*************************************************************99988 PP

                    -TT-BHHHHHHHHHHH CS
  Condensation  306 keaktfselikrvked 321 
                     + +t++ l +r+++d
    CDO69499.1 1479 VNVDTLT-LARRIQAD 1493
                    7777664.55565555 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   9.6e-13   4.3e-09       3      57 ..      25      79 ..      23      89 .. 0.87
   2 !   38.6   0.1   2.3e-13     1e-09       2      67 .]     538     602 ..     537     602 .. 0.97
   3 !   39.3   0.1   1.4e-13   6.3e-10       3      67 .]    1091    1154 ..    1089    1154 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 9.6e-13
  PP-binding  3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfeh 57
                ++e+++   +++++ ++p+t+ f+ G+DSl++++l a l+++fgv+++++++++ 
  CDO69499.1 25 VLEVMKPHVKIAADHLGPHTNVFECGMDSLAVARLSADLRRTFGVQVTPAQIMQR 79
                5555666668899999************************************985 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 2.3e-13
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 ++++l+++ l+v+++ ++ dt+l +lGlDS+ +v l ++l +e g++++++d++ + t+++laa++
  CDO69499.1 538 TICALASQFLRVNPDLVTGDTSLLSLGLDSIKSVGLSRRLAKE-GLRLSSADIMGLGTPRRLAARI 602
                 699*********999999*************************.*******************986 PP

  == domain 3  score: 39.3 bits;  conditional E-value: 1.4e-13
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   r+++a+v +vp ++++++t+l  lG+DS++av+l+a+ ++  g+++++sd+ + +t+ +l+a+l
  CDO69499.1 1091 FRDVIASVAKVPSSSVHLSTPLAALGIDSISAVQLVAKAKRS-GFRLTSSDVVQSRTVDALLARL 1154
                  6899**********************************9998.******************9875 PP

>> Polyoma_coat2  Polyomavirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.3e-05      0.28      53     159 ..     627     731 ..     616     736 .. 0.79
   2 ?   -3.6   0.0       1.5   6.9e+03      78     142 ..    1132    1191 ..    1086    1199 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.3e-05
  Polyoma_coat2  53 vaeAlaaiglteeafavlsaaptalaglaaliqtvtggsavaaagaaffgdwdhkvpvvdlaqernmAlqlyrpddylDilFPGvesfsravhyld 148
                    + eA+    +   a   ++a pt++ + ++l qtv++g  +      f   ++++v v  l    + A+           + PG    + avh++ 
     CDO69499.1 627 IREAIDPLTIKLSAEDDVQAFPTTTLQAGMLSQTVSSGGRLYVHL--FPLRLAKDVNVSRLRGAWEEAVSSLDILRTSFHFLPGPGRWAAAVHSIG 720
                    57899999999999999*******************988887766..45557888888888655555544433322335678************** PP

  Polyoma_coat2 149 plhWgesLfea 159
                    +lhW+es +ea
     CDO69499.1 721 VLHWSESAYEA 731
                    *******9986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
  Polyoma_coat2   78 aglaaliqtvtggsavaaagaaffgdwdhkvpvvdlaqernmAlqlyrpdd.ylDilFPGvesfsr 142 
                      g+  +   v    +v a+ a++    + k ++v + + + +   + +p+d +l +lFP ve +++
     CDO69499.1 1132 SGFRLTSSDVVQSRTVDALLARLK---EIKASMV-ICNTHLVS--IDIPRDrWLSLLFPDVERIVH 1191
                     444444444443333333333333...2344444.32333333..334444267888888887774 PP

>> Transferase  Transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.044     2e+02     149     184 ..     222     257 ..     219     326 .. 0.63
   2 ?   -2.9   0.0      0.45     2e+03     150     171 ..     775     796 ..     773     801 .. 0.82
   3 ?    3.3   0.0    0.0058        26     142     193 ..    1310    1363 ..    1276    1422 .. 0.77
   4 ?    1.9   0.0     0.016        71     146     175 ..    1588    1617 ..    1582    1619 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.044
  Transferase 149 gvsvsHaiaDgaSlktfieswaelargekkvtvtpl 184
                    s+ Ha  Dg Sl  ++e++ +  ++++++ + pl
   CDO69499.1 222 VLSIHHALYDGISLPVLLEDLERAYGQQQQLPSAPL 257
                  5799****************9988877765555554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.45
  Transferase 150 vsvsHaiaDgaSlktfieswae 171
                  v + Ha  Dg+S+ ++++s  +
   CDO69499.1 775 VVLHHALYDGLSIAKLLHSVQR 796
                  5678************998665 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.0058
  Transferase  142 kcGgvalgvsvsHaiaDgaSlktfieswaelargekkvtvt..plfarelllpr 193 
                     G++ l + + H   D+ Sl+ +i ++++l +ge++ +++   +f r+ +l +
   CDO69499.1 1310 SEGSLYLLIHLHHFQYDAWSLQLIIDDLTRLYEGEEPRSSNdlDSFLRSVVLTP 1363
                   67999999**************************96655441134555554444 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.016
  Transferase  146 valgvsvsHaiaDgaSlktfieswaelarg 175 
                   va+++  + a+ D + +k +ie+wa+l r+
   CDO69499.1 1588 VAMSIEATAAVLDKTVAKSLIEQWASLVRE 1617
                   799***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 10437.56
//
Query:       CDO69500.1  [L=167]
Description: hypothetical protein BN946_scf184785.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-27   95.9   0.0      4e-27   94.6   0.0    1.6  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
    5.8e-15   55.0   0.0    9.6e-15   54.3   0.0    1.4  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    2.8e-06   27.1   0.1     0.0018   18.0   0.1    2.3  2  MafB19-deam      MafB19-like deaminase
  ------ inclusion threshold ------
       0.07   13.0   0.0       0.41   10.5   0.0    1.9  1  APOBEC_N         APOBEC-like N-terminal domain
       0.21   10.6   0.0        1.5    7.8   0.0    1.9  2  LpxK             Tetraacyldisaccharide-1-P 4'-kinase


Domain annotation for each model (and alignments):
>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   1.1e-30     4e-27      11     128 ..      38     161 ..      34     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 1.1e-30
     Inv-AAD  11 eilatGytleleGnthaeqccliklaekhevaeeklaev............lpkntvlYttmepCskRlsGnlpCveRilklkeaiktvyvGvkePekf 97 
                  i+a+Gy+ el+Gnthae  +l+k  +   +++e+lae+            l + + +YttmepCs R sG  pC + i++   +ik+ ++Gv eP+ f
  CDO69500.1  38 VIIARGYSRELPGNTHAEANALTKARQ---LSQEQLAELfpdapgpididtLLTYADIYTTMEPCSVRTSGLSPCADAIIAA--QIKRCFIGVGEPDDF 131
                 599******************999654...4444444442222222222224455679*********************975..79************* PP

     Inv-AAD  98 vaenkgrkkleeagievvhvegledeileva 128
                 v+  +g +kl++ag+ev+  +gle+e leva
  CDO69500.1 132 VKC-EGAQKLTNAGVEVIWLNGLEKECLEVA 161
                 *87.6999**********************9 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.7e-18   9.6e-15       6     100 ..       2     124 ..       1     125 [. 0.90

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.7e-18
                      HHHHHHHHHHHHHH.TTTSCSEEEEEEE......TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCE.................TTEEE CS
  dCMP_cyt_deam_1   6 kllelalkaakeaq.kcsnfkVGavivk......ngeiistgyngepaggsktiHAEvnAilkaaknggskl.................egatl 75 
                      ++l+lal++ak++  + + f VG+vi        +  ii++gy++e +g++   HAE nA++ka +  +++l                 + a +
       CDO69500.1   2 EFLRLALDEAKKCTpTPTAFCVGCVITApyppglKPVIIARGYSRELPGNT---HAEANALTKARQLSQEQLaelfpdapgpididtllTYADI 92 
                      699***********************976433344579*************...**********99954455789*************999*** PP

                      EEEE--BHH.......HHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  76 yvtlePCsm.......Cakaiiqsgikkvvvg 100
                      y+t+ePCs        Ca+aii ++ik++++g
       CDO69500.1  93 YTTMEPCSVrtsglspCADAIIAAQIKRCFIG 124
                      ********889*****************9986 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0012       4.2      35      68 ..      39      69 ..      12      74 .. 0.80
   2 !   18.0   0.1     5e-07    0.0018      69     111 ..      86     135 ..      82     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
  MafB19-deam 35 viargsnekelnakataHaEiaalqqAakklksk 68
                 +iarg+ ++        HaE++al +A +  +++
   CDO69500.1 39 IIARGYSRE---LPGNTHAEANALTKARQLSQEQ 69
                 677777733...35668**********7655544 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 5e-07
  MafB19-deam  69 rlddatlyvtlepCdm.......CagaivqaglkklvygagnpkslnkLk 111
                   l  a +y+t epC++       Ca ai+ a++k+   g+g+p+   k +
   CDO69500.1  86 LLTYADIYTTMEPCSVrtsglspCADAIIAAQIKRCFIGVGEPDDFVKCE 135
                  5667889*******744444444******************999844443 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.41      47      96 ..      51     117 ..       9     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                 TBCHHHHHHHHHHHHT--..T.............TEEEEEEEEESS-S-HH.......HHHHHHHHH CS
    APOBEC_N  47 skHaEelflediedqelre.p.............kkkyeitlYvswsPChessde...Caeklaafl 96 
                 ++HaE   l++ ++ ++++               +      +Y+++ PC   +     Ca+++ a+ 
  CDO69500.1  51 NTHAEANALTKARQLSQEQlAelfpdapgpididTLLTYADIYTTMEPCSVRTSGlspCADAIIAAQ 117
                 589999988887766555442578899999999877788899*********88889*****998865 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00043       1.5      64      85 ..      33      53 ..      17      71 .. 0.76
   2 ?    0.7   0.0     0.062   2.2e+02     225     244 ..     114     133 ..      87     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00043
                S..-EEEEE--TSSSS-S.EEE CS
        LpxK 64 rglkvgvlSRGYggkskgapvl 85
                 glk+++++RGY ++  g +  
  CDO69500.1 33 PGLKPVIIARGYSRELPGNT-H 53
                59************998843.3 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.062
                 GTTS-EEEEESSTTHHHHHH CS
        LpxK 225 lagkkvlavaGignPerFfk 244
                 +a++   ++ G+g+P+ F+k
  CDO69500.1 114 IAAQIKRCFIGVGEPDDFVK 133
                 4555568999*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1194.40
//
Query:       CDO69501.1  [L=1568]
Description: hypothetical protein BN946_scf184785.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-78  262.5   0.2    2.3e-78  262.5   0.2    2.5  1  SH2_2          SH2 domain
    1.7e-31  108.6   0.1    3.4e-31  107.7   0.1    1.5  1  HHH_7          Helix-hairpin-helix motif
    3.1e-30  105.0   0.0    7.2e-30  103.8   0.0    1.7  1  YqgF           Holliday-junction resolvase-like of SPT6
    6.2e-28   97.5   0.0    1.7e-27   96.1   0.0    1.8  1  HTH_44         Helix-turn-helix DNA-binding domain of SPT6
    4.9e-20   71.9  25.3    4.9e-20   71.9  25.3    6.4  5  SPT6_acidic    Acidic N-terminal SPT6
    3.7e-08   33.4   0.0    1.1e-06   28.6   0.0    3.1  3  SH2            SH2 domain
    4.5e-06   27.5   0.4    1.7e-05   25.7   0.4    2.1  1  HHH_9          HHH domain
    2.6e-05   24.4   0.1      6e-05   23.2   0.1    1.7  1  HHH_3          Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.038   13.7   1.6      0.093   12.4   0.0    2.4  3  Tex_N          Tex-like protein N-terminal domain
       0.18   12.3   0.0       0.41   11.1   0.0    1.6  1  Tex_YqgF       Tex protein YqgF-like domain
        0.6    8.3   2.6          1    7.6   2.6    1.2  1  Peptidase_A21  Peptidase family A21


Domain annotation for each model (and alignments):
>> SH2_2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.2   1.4e-81   2.3e-78       2     215 ..    1226    1437 ..    1225    1438 .. 0.96

  Alignments for each domain:
  == domain 1  score: 262.5 bits;  conditional E-value: 1.4e-81
       SH2_2    2 ydeeaeeedlkkeeekkkkeekkrkkyvkRvikHpnFknvsaeeaeellaskerGdvviRPSskgedhLtvtwkvadgvyqhidvlEedke.nefsl 97  
                  ++++++e+d  +++++kk++e +r++   RvikHpnF+n++a++ae++l++++rGdvviRPSskg++hL+vtwkv+d++yqhidv+E + + + +  
  CDO69501.1 1226 WNHAQHERD-MEMQARKKRAEVDRTR---RVIKHPNFHNFNAQQAEAYLEKQQRGDVVIRPSSKGSNHLAVTWKVDDKLYQHIDVVELNADpTGQLA 1318
                  999999999.5666777777777777...*************************************************************9555999 PP

       SH2_2   98 gktLiigk.eeyeDLDeliarhvepmakkveellahekfkkgskeeveelLreekkanpkrsvYafslskkkpgkflLsflankkarveheyvkvip 193 
                  g+++++++ ++++DLDeli++hv++ma+kveel+ hekfk g++++++ +Lr+  +anp++s+Y f+l++k+pg+f L++lank+++v++++v+v+p
  CDO69501.1 1319 GSKFVVDGtHQFSDLDELIVNHVQAMARKVEELMMHEKFKPGTEDDLHLFLRNFVAANPSKSAYGFTLNRKRPGHFNLCYLANKNSTVQTWPVRVTP 1415
                  ******9989*************************************************************************************** PP

       SH2_2  194 egfklrkqefddvkaLlnwFKk 215 
                  e++ l ++  + v +L+++FK 
  CDO69501.1 1416 EAYYLFDTPAAGVPELCDAFKV 1437
                  *********************6 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   2.1e-34   3.4e-31       2     103 ..     894     996 ..     893     997 .. 0.95

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 2.1e-34
                 HHHTS--.-TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHHHC-S----TTHHHHTTSS-HHHHHHHCC CS
       HHH_7   2 dvlslsf.hPlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklkrlnerlearsqlitkqilskkvflncag 99 
                 d+ ++ f + +q+l+++e+ll ale  lvdivn+vgvd+n+av++ y++ ll+y++GlGprka+ l+kk++ ++++l +r q+i +  l+ k+fln+ag
  CDO69501.1 894 DIAAITFeDEYQQLIPQEKLLTALERVLVDIVNKVGVDINRAVTDSYYQHLLRYVCGLGPRKAQVLVKKIASMGGNLVNRDQFIKNGLLTTKIFLNAAG 992
                 66677773579**************************************************************************************** PP

                 CEE- CS
       HHH_7 100 flki 103
                 fl i
  CDO69501.1 993 FLRI 996
                 **98 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   4.4e-33   7.2e-30       2     149 ..     744     891 ..     743     892 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 4.4e-33
                 -----EEEEE-TT--.TTS-EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTT....B-TT CS
        YqgF   2 gkiikvLgvafgkgr.sddaiicvlvngeGevvdslklaareedrekkakfvetlkkfllskkPdvigvsGenrdaqkliedvkevlheke....qdsr 95 
                 g  ++v++++ gkg   +d i  +++++ G + ++ kl ++  + e++++f +    ++++ +Pdvi++ G +  + kl +++ke l          ++
  CDO69501.1 744 GDTPSVMAMSWGKGDpHKDYIAVIFMDEAGRLREHTKL-DNLVNTENQDEFLD----MVKRRRPDVIAIGGFSIATTKLSRRIKELLDGTRnggdRSEE 837
                 7899***********888889999**************.**************....9*****************************876422224567 PP

                 S-B--EEE---TTHHHHHTSHHHHHHSTT--HHHHHHHHHHHHHH-HHHHHHCS CS
        YqgF  96 lstvgvilvddevailYqnskkaeaefrdkPpllkyavalaRkiqdPLleyaql 149
                 ++ ++vi+v deva+ Yq s++a +ef  + pl ky++ laR++q+PL eya+l
  CDO69501.1 838 VPNIPVIYVHDEVARIYQHSQRADEEFSALTPLGKYCIGLARYVQSPLNEYAAL 891
                 889*************************************************98 PP

>> HTH_44  Helix-turn-helix DNA-binding domain of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0     1e-30   1.7e-27       2     115 .]     323     444 ..     322     444 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1e-30
                 T---HHHHHHHHHHHHHHHHHHH---SS.......---HHHHHHHHHHHHHHHTS---HHHHHHH-GGGSB-SSTTS-.....B--HHHHHHHHHHHHH CS
      HTH_44   2 keltdeeleeeaeWiakkllkekqesle.......eleeefkeavkkvleFlvkdelEvPfifqhRkdyllhaekeek.kaeklLneddLwriveldik 92 
                 k+lt+++l+++a+W++++l+ +k+ ++        +l +e+++a++ +l++l++ e+EvP+i++h++dy++  + ++  +  +lL+ ddLwr++++++k
  CDO69501.1 323 KQLTENDLDDAASWVITRLSSRKERDFFrgdgqyhHLLPELVQAITCALRYLFVSEFEVPYIWTHKRDYISFFDPANPrAPVELLSLDDLWRLYSVGQK 421
                 79*******************9997666799**999*************************************999886789***************** PP

                 HHHHHHHHHHHHHHHHCC----H CS
      HTH_44  93 frsllekrnaleklyeklkvdDk 115
                 +r+lle+r+al++ly++l ++D+
  CDO69501.1 422 YRALLERRAALDALYSRLGISDD 444
                 ********************985 PP

>> SPT6_acidic  Acidic N-terminal SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9  25.3     3e-23   4.9e-20       1      84 [.      45     127 ..      45     134 .. 0.76
   2 ?   -1.2   0.6         2   3.2e+03      52      66 ..     149     163 ..     129     174 .. 0.66
   3 ?   -3.0   2.0         7   1.1e+04      22      35 ..     258     271 ..     237     298 .. 0.59
   4 ?   -2.7   0.4       5.6   9.1e+03      24      43 ..     485     493 ..     471     508 .. 0.50
   5 ?   -0.4   1.6       1.1   1.8e+03       5      37 ..    1044    1083 ..    1020    1102 .. 0.56

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 3e-23
  SPT6_acidic   1 DssEEedddeeeerkvregFIvdddeeeeeeeeseeeeekkrrkkkkkrre.....eeedaLdedDldLieentgvkvkrkkkkfkRlk 84 
                  DssEE ++deee+r++regFIvd+de+ee+e+++e  e+++rrk++kkr +     e+edaLde+Dl+L+eentg+   r   +++R++
   CDO69501.1  45 DSSEEPEEDEEEARRIREGFIVDEDEDEEQEDSEE--ERRRRRKRRKKR-HhkprsEDEDALDEEDLELLEENTGAAFPR---RITRIR 127
                  9************************9987776653..233333333333.3357766669****************9998...566665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
  SPT6_acidic  52 eeedaLdedDldLie 66 
                  +++++Ld+dD+  ++
   CDO69501.1 149 SSDEDLDNDDFPQVQ 163
                  445799999986555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7
  SPT6_acidic  22 vdddeeeeeeeese 35 
                   ddde  +eee+++
   CDO69501.1 258 LDDDEVAQEEEQAK 271
                  45554333333222 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.6
  SPT6_acidic  24 ddeeeeeeeeseeeeekkrr 43 
                  ddee+ e+           r
   CDO69501.1 485 DDEEQTET-----------R 493
                  11222221...........1 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.1
  SPT6_acidic    5 EedddeeeerkvregFIvdddeeeeeeeese.e.......e 37  
                   Eed  +e+       +I  dd++e++ ++ + +       +
   CDO69501.1 1044 EEDIHDEHP-SHVVSLIMQDDDNEKKLDDLNlDdfavnmyQ 1083
                   222222222.2234556665555555444333345554321 PP

>> SH2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   2.2e+03      52      75 ..     342     365 ..     331     366 .. 0.84
   2 !   28.6   0.0   6.7e-10   1.1e-06       4      77 .]    1259    1340 ..    1257    1340 .. 0.91
   3 ?    0.2   0.0       0.5   8.1e+02      31      74 ..    1389    1432 ..    1387    1435 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
                 EEETTSEEEEETTEEESSHHHHHH CS
         SH2  52 qstengkyyiteeekfsslaeLve 75 
                  s++++ +++ +++++  l+eLv+
  CDO69501.1 342 SSRKERDFFRGDGQYHHLLPELVQ 365
                 55666689**************97 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 6.7e-10
                  SSSHHHHHHHHHHTTSSTTEEEEEEESSSTTEEEEEEEETT.EEEEEEEEEETTS........EEEEETTEEESSHHHHHHHH CS
         SH2    4 gkisrkeaerlLleekkdGtFLvReSeskpGdytlsvvedg.kvkhykiqsteng........kyyiteeekfsslaeLvehY 77  
                   + + ++ae +L + +++G+ ++R S++  ++++++++ d+   +h+++ +++          k+++ + ++fs+l+eL+  +
  CDO69501.1 1259 HNFNAQQAEAYLEK-QQRGDVVIRPSSKGSNHLAVTWKVDDkLYQHIDVVELNADptgqlagsKFVVDGTHQFSDLDELIVNH 1340
                  566789*******9.***********************99977899999999988899****99***************9765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.5
                  SSTTEEEEEEEETT..EEEEEEEEEETTSEEEEETTEEESSHHHHH CS
         SH2   31 skpGdytlsvvedg..kvkhykiqstengkyyiteeekfsslaeLv 74  
                  + pG++ l+ + ++  +v+   ++ t +  yy+++ +  + ++eL+
  CDO69501.1 1389 KRPGHFNLCYLANKnsTVQTWPVRVTPEA-YYLFD-TPAAGVPELC 1432
                  4799*****99999999***********8.**999.4466677766 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.4     1e-08   1.7e-05       1      32 [.    1017    1049 ..    1017    1087 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1e-08
       HHH_9    1 npLDnTavHPEsYalakkllkk.lgldlkelig 32  
                  +pLD+T vHPE Y+la+k++++ l+ld +++ +
  CDO69501.1 1017 DPLDSTRVHPEDYELARKMATDaLELDEEDIHD 1049
                  69*****************99846666665433 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.7e-08     6e-05       1      65 []     925     995 ..     925     995 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.7e-08
       HHH_3   1 vnavgvdiNtAsae.....eLqklpGlgpklAknIvayReknG.pfksreeLlkvkglgpktfeqlagflr 65 
                 vn+vgvdiN A  +     +L+++ Glgp++A+ +v+   + G ++ +r+++ k   l+ k f  +agflr
  CDO69501.1 925 VNKVGVDINRAVTDsyyqhLLRYVCGLGPRKAQVLVKKIASMGgNLVNRDQFIKNGLLTTKIFLNAAGFLR 995
                 79*********864333339*******************99854*************************97 PP

>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5   4.1e+03      53     105 ..     421     478 ..     408     481 .. 0.57
   2 ?   12.4   0.0   5.7e-05     0.093     126     178 ..     543     599 ..     499     601 .. 0.82
   3 ?   -1.8   0.1       1.3   2.2e+03      67     142 ..     652     725 ..     643     734 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
       Tex_N  53 ylrelekrkeevlksie....eqgklteeLkkkieaaktlee.ledlylpYkpkrkTk 105
                 ++r+l +r+++  +  +    +++  ++e++k++e+a+  ++  e l   Y +++k+k
  CDO69501.1 421 KYRALLERRAALDALYSrlgiSDDYFENEVRKRVETAEMAADaTEWLGMKYHEEKKSK 478
                 5555555555443333322223344455888888888766541566778888888877 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.7e-05
       Tex_N 126 sl.aeeeaakyvn...kevksaeealegardIiaeeisedaelrkklrellkkegvi 178
                 +l + + a ++v+    + + aee l+ ar Iia e+ +d+ lr+++r+++k+++ i
  CDO69501.1 543 ELnPLAYADQFVDpdaTRAQPAEELLARARMIIATELGKDPLLRHEIRNTFKANALI 599
                 3324588999999988888999******************************99877 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.3
       Tex_N  67 sieeqgklteeLkkkieaaktleeledlylpYkpkrkTkatiArekGLeplAelileqkslaeeeaakyvnkevks 142
                 si+ + + + + ++k+++a   +   d  + + ++r    + A e+ L p+  +     +  +eea++y+ k++++
  CDO69501.1 652 SITLRPEAKAHFERKLNDAFASDSFSDTARAWNEERSRVVQEALEQHLVPIGVKWTR--EWIREEAEDYLAKQCAQ 725
                 555566667778888999999999999999999999999999999999999877776..33578999998877665 PP

>> Tex_YqgF  Tex protein YqgF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.41      40     126 .]     786     882 ..     762     882 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHTT--EEEEES.STTHHHHHHHHHHHHHH.........GGG--EEEEE--TTHHHHHHSHHHHHH-TTS-HHHHHHHHHHHHHH CS
    Tex_YqgF  40 veeakkklkklvkkykveliaiGn.Gtasreteklvaelike.........eelkvkyvivsEaGaSvYSaselaaeEfpdldvslrgavsiarrlq 126
                  +e ++++ ++vk+ + ++iaiG    a+ +  + ++el+           e  ++ ++ v +  a +Y  s+ a eEf  l+   +  + +ar +q
  CDO69501.1 786 NTENQDEFLDMVKRRRPDVIAIGGfSIATTKLSRRIKELLDGtrnggdrseEVPNIPVIYVHDEVARIYQHSQRADEEFSALTPLGKYCIGLARYVQ 882
                 4567789999************86356777777777777744334555433344788899************************9999999999887 PP

>> Peptidase_A21  Peptidase family A21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.6   0.00062         1      27      94 ..      73     139 ..      44     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00062
                    XXXXXXXXXXXXX..XXXXXXXSXHHHHCCCCHH.HCCHTTTC.SSSSSSCCCXHHCCCCCSSSBXXBHH CS
  Peptidase_A21  27 qtvtvsnsrnkRRkrRkgrklspvvaveaaaidl.aqlldaes.vavsagrssvpelreiaaqeidlsed 94 
                    ++   +++r++RRkrRk r+  p  + e a  +   +ll++++  a+++ ++++++ re   +e++++++
     CDO69501.1  73 EQEDSEEERRRRRKRRKKRHHKPRSEDEDALDEEdLELLEENTgAAFPRRITRIRPGRE---TESPPAAS 139
                    45567789999999******99*999998876551567776653689*******99999...55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1365  (0.0761336); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.25u 0.36s 00:00:01.61 Elapsed: 00:00:00.53
# Mc/sec: 8931.73
//
Query:       CDO69502.1  [L=285]
Description: hypothetical protein BN946_scf184785.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-20   71.3   0.1    1.6e-19   70.4   0.1    1.5  1  JmjC      JmjC domain, hydroxylase
      1e-18   68.0   0.5    1.5e-18   67.5   0.5    1.2  1  Cupin_8   Cupin-like domain


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.1   1.8e-23   1.6e-19       2     114 .]      38     145 ..      37     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 1.8e-23
                 EEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-HHH.HHHTT---EEEEE-TT-EEEE-TT-E CS
        JmjC   2 lylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskknskeqpdl.lrhkstlispkq.lekegipvyrfvqkpgefVfvfpgay 98 
                 +y+g  ++ tp h++ + +yS +++++ + k+W ++p+e+   l +   ++       l + + ++ ++p q  +  + ++  ++q pge++fv++g+y
  CDO69502.1  38 VYVGAAGTFTPLHRDVYTSYS-WSTNVSGRKRWWLFPPEQTPLLLRKGGEEH------LeTVYDVRDVDPAQfPQFVRAQPVIIEQGPGETIFVPSGWY 129
                 8*******************9.*******************99996666662......338888999999998444556999***************** PP

                 EEEEESSSEEEEEEEE CS
        JmjC  99 Hsvfnlgfniaeavnf 114
                 H+v+nl ++i++++n+
  CDO69502.1 130 HQVVNLTDCISINHNW 145
                 ***************9 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.5   1.6e-22   1.5e-18     135     248 ..      38     145 ..       6     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.6e-22
     Cupin_8 135 lWlGnsasvsslHkDhye..NlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLylPalWfHe 231
                 +++G +++++ lH+D+y    + + v+GrK+++LfpP++ p l  +  ++         +dv+++d  +fp++ +a ++++++  +Ge++++P++W+H+
  CDO69502.1  38 VYVGAAGTFTPLHRDVYTsySWSTNVSGRKRWWLFPPEQTPLLLRKGGEE----HLETVYDVRDVDPAQFPQFVRA-QPVIIEQGPGETIFVPSGWYHQ 131
                 799*************87336889*******************9887333....2235589***************.********************** PP

     Cupin_8 232 Vkslaeeplhlavnywy 248
                 V +l   + ++++n ++
  CDO69502.1 132 VVNL--TD-CISINHNW 145
                 ****..88.99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2101.69
//
Query:       CDO69503.1  [L=444]
Description: hypothetical protein BN946_scf184785.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-109  363.5   0.0   1.1e-108  363.2   0.0    1.0  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.2   0.0    6e-113  1.1e-108       3     318 ..      84     417 ..      82     418 .. 0.97

  Alignments for each domain:
  == domain 1  score: 363.2 bits;  conditional E-value: 6e-113
                    HCCS.EEEEEE-HHHHHHHCTTTTT...-TTTHCTSSS-HHHHHHHTEEEEEEEEE--C........CCCCCCHHHHHHHHHHHHHHHHHHGTTTE CS
  Peptidase_M19   3 lkkliviDghndlplklrqekkesl...llekdselqtdlerlraggvsavlfaifvpe........dasyeeavkatleqidlirrlvrknpeql 87 
                    l++++viDgh+dlp+ +r+   ++    +lek   +++d++rlr+g+v++++++++v +          + +  v++tleqid+ + l+ k+p+++
     CDO69503.1  84 LRSSPVIDGHIDLPILVRSRYANNVsavDLEKPFAGHVDIPRLREGKVGGFFWSVYVGCpgseegedFLNATWRVRDTLEQIDVSKLLIDKYPDTF 179
                    6789************99999887789999*********************************998867788899********************* PP

                    EE-SSHHHHHHHHHTT-EEEEEEEESCGGGTT-HHHHHHHHHTTEEEEES-SSS-BSSB-BCCGTT....SSSSB-HHHHHHHHHHHHHT-EEE-T CS
  Peptidase_M19  88 klvrtaddierakkegkiavllgiegaealgddlallrafyalGvrvlgltynrnnkfAdgaleek...dedgGLsefGkelVrelNrlgiliDlS 180
                    +l+  a+d++ a  +g+ia+llg+eg+++lg+++++lr+++alGvr+++lt+ ++n fAd++  e+    ++gGLsefG +l++e+Nrlg+l+DlS
     CDO69503.1 180 SLALGARDVKTAISRGRIASLLGVEGGHQLGNSIQVLRQYHALGVRYVTLTHVCHNAFADSCGFEPgikPRWGGLSEFGYALIDEMNRLGVLVDLS 275
                    ********************************************************************99************************** PP

                    TB-HHHHHHHHHH-SSE.EECCEEBTTTS--TTSB-HHHHHHH....HHTT-EEEE-SSHHHCTTTS--BHHHHHHHHHHHHHHT-GGGEEE---T CS
  Peptidase_M19 181 hlsektfldvlelSkaPvvaSHSnaralcdhpRNltDeqlkai....aesgGvvgvtfvpaflkekaeatledvvdhidyivelaGidhVGlGsDf 272
                    h+s++t++++l++SkaPv+ SHS+ara++d pRN++D++l+++     +++ vv+v+f+p+f+ +  ea+++ v+dhi++i+++aG +hVG+GsDf
     CDO69503.1 276 HTSDDTAKQALKYSKAPVIWSHSSARAVHDVPRNVPDDVLELVglgpNKTDAVVMVNFAPFFVAKPGEADVKAVADHIEHIAKVAGKKHVGIGSDF 371
                    ******************************************9666669*********************************************** PP

                    TTTSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHH CS
  Peptidase_M19 273 dgggelpegledvsklpnltaeLlrrgyseadiekilggNflrvle 318
                    dg+g +p+gledvsk+p+l+aeL rrg+++ d+++++ggN+lrv+e
     CDO69503.1 372 DGIGDVPVGLEDVSKYPDLIAELYRRGWNSFDLAGLTGGNLLRVME 417
                    ********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3049.11
//
Query:       CDO69504.1  [L=550]
Description: hypothetical protein BN946_scf184785.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   1.7       0.64   10.1   1.7    2.0  1  Arv1      Arv1-like family
       0.23   11.6   1.5       0.49   10.5   1.5    1.5  1  DUF3742   Protein of unknown function (DUF3742)


Domain annotation for each model (and alignments):
>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.7   7.2e-05      0.64     100     204 ..     177     284 ..      16     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.2e-05
        Arv1 100 sesessslsaqaivlesakelkqylfflvlalletlvfhlsillllslesslsalllkykkarlnalltalllssyaklfpilmlI....Weydltala 194
                 +++++  +s++  +  + +++ +y++f++  + +++   ++   l+++ +++  +  +y++ +l+a+ +a+ +s ++ +f  ++++    W+y + al+
  CDO69504.1 177 RTQAQAANSTNGHIYLNRQATMEYRCFQLVTSGKHVQSAILSTHLSNV-REFNLFNSQYESGTLQAVGAAIAVSGVVDIFATVLVVglsnWAYGWLALQ 274
                 234444455555555578999999999766666666655555555555.666667789***********************999999999***999999 PP

        Arv1 195 lslikllvll 204
                 + li + v++
  CDO69504.1 275 VALIAVKVFF 284
                 9888887776 PP

>> DUF3742  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   5.5e-05      0.49      32      77 ..     236     281 ..     223     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.5e-05
     DUF3742  32 aswlvakGvpaavatavlwvvklavlGvllyvafWlalllvvvvlv 77 
                 ++ l a G++ av  +v + + + v+G+  ++  Wlal ++++ + 
  CDO69504.1 236 SGTLQAVGAAIAVSGVVDIFATVLVVGLSNWAYGWLALQVALIAVK 281
                 5789999*******************************88776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3821.32
//
Query:       CDO69505.1  [L=579]
Description: hypothetical protein BN946_scf184785.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-08   34.7  16.0       0.29   12.1   0.2    6.8  6  WD40         WD domain, G-beta repeat
    2.5e-06   27.7   0.2       0.17   12.2   0.0    3.7  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
        5.8    6.2   9.8        7.7    5.8   9.8    1.1  1  SDA1         SDA1


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0056        33      13      35 ..     163     178 ..     148     178 .. 0.74
   2 !    5.7   0.4    0.0051        30       6      38 .]     222     255 ..     217     255 .. 0.78
   3 !    6.3   0.0    0.0032        19      23      38 .]     397     412 ..     386     412 .. 0.85
   4 !    7.0   0.1    0.0019        12      15      38 .]     437     460 ..     430     460 .. 0.87
   5 !   12.1   0.2   4.8e-05      0.29      12      38 .]     484     511 ..     473     511 .. 0.82
   6 ?    3.9   0.0     0.018   1.1e+02       4      29 ..     530     557 ..     527     561 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0056
                 EEEEEEETTSSEEEEEETTSEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvr 35 
                   ++      + l++GsdDg +r
  CDO69505.1 163 L-CM------THLITGSDDGYIR 178
                 3.66......77899******98 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0051
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ +H ++v++la ++d + ++s+++Dg    Wd
  CDO69505.1 222 VWNAHkGHVSALALQHDEKGFFSAGWDGEAINWD 255
                 55677555*****9999999999****9776665 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0032
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 ++l++++ Dg v +Wd
  CDO69505.1 397 DLLMTAHVDGQVILWD 412
                 56889**********9 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0019
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 s ++s dg+ +  G ++gtv i+d
  CDO69505.1 437 SACWSGDGSQIYVGRRNGTVEIYD 460
                 445***********99******98 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 4.8e-05
                 S..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s..vtslafspdgawlasGsdDgtvriWd 38 
                 s  v+++   pdg+ la++s   ++r+W+
  CDO69505.1 484 SgvVSCVVAFPDGRHLACAS-TDNIRLWN 511
                 34579************999.*******8 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.018
                 EEEEESS..SSEEEEEEETTSSEEEEEE CS
        WD40   4 lrtltGH..ssvtslafspdgawlasGs 29 
                  +++ GH  ++v+ + ++p  ++l+s+s
  CDO69505.1 530 FKIIPGHhgGFVSQMLVDPAARFLVSAS 557
                 56778998444*************9987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00072       4.3      30      81 ..     223     270 ..     206     283 .. 0.85
   2 !   12.2   0.0   2.9e-05      0.17      28      69 ..     424     463 ..     393     473 .. 0.68
   3 ?    3.5   0.0     0.015        89      28      68 ..     473     513 ..     466     521 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00072
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  w    ++++++v++La ++d+k +  a  dge    d ++g++v+++ ++  
   CDO69505.1 223 W----NAHKGHVSALALQHDEKGFFSAGWDGEAINWDLNTGNMVRKFIAHGA 270
                  4....45899************************************988866 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  r+w    +k+     s +W+ dg+ + v+  +g+v+++d+ +
   CDO69505.1 424 RLWMS--EKTPPWCMSACWSGDGSQIYVGRRNGTVEIYDVRQ 463
                  44444..45555566789*********************976 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.015
  ANAPC4_WD40  28 rvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  ++w++  ++++++ v+++   pdg+ La a  d+ +rl ++ 
   CDO69505.1 473 KIWKTlRNPASSGVVSCVVAFPDGRHLACASTDN-IRLWNVA 513
                  799988889999999999999********99887.6776665 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.8    0.0013       7.7      95     181 ..       3     103 ..       1     136 [. 0.43

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0013
        SDA1  95 sddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkk............. 180
                 sd+e+d +d + ++ +d eed +++  d  + +     ++e e e  e eee+++e+ + +++++   +++ee+   +  k+ +++             
  CDO69505.1   3 SDSEEDYDDLDFDNGSDAEEDIDEDILDALEGD--LAAAAEAEGEGTEAEEETDTESSDGGSDDD---DADEEDIHPH--KDLERMltqtlqeaalpsk 94 
                 456677778888888888888888855553322..333333333333322222222222222222...2222222222..1122222333444455555 PP

        SDA1 181 ........k 181
                         +
  CDO69505.1  95 psspvnqpS 103
                 555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3873.22
//
Query:       CDO69506.1  [L=472]
Description: hypothetical protein BN946_scf184785.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-74  248.0   1.9    9.2e-74  247.3   1.9    1.3  1  SRP54        SRP54-type protein, GTPase domain
    5.3e-32  110.4   2.4    5.2e-31  107.2   0.1    2.5  2  SRP_SPB      Signal peptide binding domain
    1.1e-18   67.1   3.0    2.4e-18   66.1   3.0    1.6  1  SRP54_N      SRP54-type protein, helical bundle domain
    2.9e-05   24.3   0.1    6.9e-05   23.0   0.1    1.6  1  AAA_33       AAA domain
    3.4e-05   23.5   0.3    9.2e-05   22.1   0.3    1.7  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
    0.00052   19.1   2.0      0.001   18.2   0.3    2.2  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0015   19.0   1.3     0.0097   16.3   0.1    2.5  2  AAA_17       AAA domain
     0.0019   18.3   0.1     0.0089   16.1   0.0    2.3  2  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0073   15.2   0.4      0.016   14.1   0.0    1.7  2  Fe-ADH       Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
       0.01   15.1   0.1      0.024   13.9   0.1    1.5  1  Zeta_toxin   Zeta toxin
      0.014   15.2   2.3      0.027   14.2   0.4    2.4  2  AAA_30       AAA domain
      0.051   13.6   0.8        2.9    7.9   0.1    2.4  2  ResIII       Type III restriction enzyme, res subunit
      0.061   12.6   0.1        1.9    7.7   0.1    2.3  1  MipZ         ATPase MipZ
      0.089   12.7   0.2       0.67    9.8   0.1    2.1  2  AAA_31       AAA domain
       0.14   12.0   1.1        3.4    7.6   0.2    2.7  2  HTH_ParB     HTH domain found in ParB protein
       0.14   11.4   0.0       0.23   10.7   0.0    1.3  1  6PF2K        6-phosphofructo-2-kinase
       0.22   11.4   2.0         10    6.0   2.0    2.6  1  NTPase_1     NTPase
        1.1    8.4   6.4         26    3.8   0.1    3.8  4  ArsA_ATPase  Anion-transporting ATPase


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.3   1.9   9.2e-77   9.2e-74       2     196 .]     107     301 ..     106     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 247.3 bits;  conditional E-value: 9.2e-77
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndke 100
                 nvi+ vGlqG GKTtt++KLa +++k+g k ++v+aDtfRa+A++Q ++ a+k++v ++++++e+dp+++a+++v k+k+e++dv++vDT+Gr+++++e
  CDO69506.1 107 NVIMAVGLQGNGKTTTCTKLAVYYQKRGFKSCIVCADTFRAGAFDQTRQSATKAKVAYFGSYTETDPVTIAAQGVAKFKKERFDVIIVDTSGRHKQESE 205
                 89************************************************************************************************* PP

                 HHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54 101 lmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 l++e+ +i ++vkp+ ++++lda++gq+a +qa+aFke+++++++i+tk+Dg+akgG+a+s++a++k+Pi+f+gvGe+++dle+f+p+ ++s+llg
  CDO69506.1 206 LFKEMVQIGEAVKPNMTVMILDASIGQAAEAQARAFKESADFGAIIVTKMDGHAKGGGAISAVAATKTPIIFLGVGEHLNDLEKFSPQPFISKLLG 301
                 **********************************************************************************************95 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3      0.24   2.4e+02      11      44 ..     296     326 ..     286     332 .. 0.68
   2 !  107.2   0.1   5.2e-34   5.2e-31       2      98 ..     335     444 ..     334     445 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.24
                 HHHHHCCCCCCHHHHCCC.......H...CCCCCHH CS
     SRP_SPB  11 lqqikkmGplskllsmiPgmsae..akaeeeaekkl 44 
                 ++++  mG+++ l++ +  m ++     +   +k++
  CDO69506.1 296 ISKLLGMGDVQGLVEHMQEMATQnpD--K---QKEM 326
                 567889*********99987766432..2...2232 PP

  == domain 2  score: 107.2 bits;  conditional E-value: 5.2e-34
                 SCTHHHHHHHHHHHCCCCCCHHHHCCC.......H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-.............HHHHHHHHHHTTS-HHHHHH CS
     SRP_SPB   2 ftlrdlleqlqqikkmGplskllsmiPgmsae..akaeeeaekklkrieaiidSMTkeErdspekll...........kesRkrRiArGsGtsvqevne 87 
                 +++rd++eq+q++++mGplsk++smiPg+ ++  +++++ea+ ++kr+ +i+dSMT++E+ds+++l+            + R++R+ArGsGtsv+ev++
  CDO69506.1 335 LSIRDWREQIQNVMNMGPLSKIASMIPGLPQDllQGSDDEASVRMKRMIYITDSMTAAELDSDGSLFmewgkdgkptgLTWRVTRVARGSGTSVREVED 433
                 689**************************9999977889999************************98888877654335******************* PP

                 HHHHHHHHHHH CS
     SRP_SPB  88 llkqfeqmkkm 98 
                 ll q+++m++m
  CDO69506.1 434 LLCQYRMMANM 444
                 *********99 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   3.0   2.5e-21   2.4e-18       1      75 []       6      88 ..       6      88 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 2.5e-21
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS.........S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk.........lkpkqqvkkivkdeL 75
                Lg+kln+al++l+++ ++de++l+++lke++ aLle+DV+vk+v +l+++vk  +v+             +++  v+k+++deL
  CDO69506.1  6 LGRKLNAALQSLNRAPVVDEKVLDALLKEVCAALLESDVNVKLVAQLRQKVKT-KVKAALeggadkgkeQNRRFVVQKAIFDEL 88
                89*************************************************77.99955599***999999************8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   6.9e-08   6.9e-05       1     113 [.     108     235 ..     108     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.9e-08
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg..avllssdtlrrrlfgtdqqskt........dytrvldrlyqilnelarkalsagrnvildatnlsrrer. 85 
                 +++ vGl+G GK+t  ++l   ++k+g   +++  dt+r   f + +qs t         yt+  + +++ + ++a k  +++++vi+  t  ++++  
  CDO69506.1 108 VIMAVGLQGNGKTTTCTKLavyYQKRGfkSCIVCADTFRAGAFDQTRQSATkakvayfgSYTETDPVTIAAQ-GVA-KFKKERFDVIIVDTSGRHKQEs 204
                 89****************977788999*****************9999999888888877777766677665.666.899*****99988877764443 PP

      AAA_33  86 ...arflklarrlgvpvrivvvetdeetlke 113
                    ++++++ +  + + ++++++++  +++e
  CDO69506.1 205 elfKEMVQIGEAVKPNMTVMILDASIGQAAE 235
                 4457777777766666677777776666555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.3   9.2e-08   9.2e-05       2     153 ..     108     258 ..     107     273 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9.2e-08
                 EEEEEESTTCCHHHHHHHHH...CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH.TT-SEEEEEECT.TTT CS
        cobW   2 vtvltGflGsGKTtLlnhll...enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere.erldviliEttG.lae 95 
                 v++ +G  G GKTt  ++l    ++r  +++ v    f   + D+++ ++t++++  +  G    t  + ++ +++ +++ + er+dvi++ t+G   +
  CDO69506.1 108 VIMAVGLQGNGKTTTCTKLAvyyQKRGFKSCIVCADTFRAGAFDQTRQSATKAKVAYF--GSYTET--DPVTIAAQGVAKFKkERFDVIIVDTSGrHKQ 202
                 56778999********999999555555555555555666889999999998776665..666555..66666666666644468**********5555 PP

                 HHHHHTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHH CS
        cobW  96 Papvaft.eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDll 153
                   ++ f+   ++ ++++ +++v+++Da  + ++ e +++ +++   +   ++++K+D  
  CDO69506.1 203 ESEL-FKeMVQIGEAVKPNMTVMILDA-SIGQAAEAQARAFKESADFG-AIIVTKMDGH 258
                 5555.665999****************.55577777777777777665.5788999965 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.73   7.2e+02     215     261 ..      46      91 ..      35      97 .. 0.74
   2 !   18.2   0.3     1e-06     0.001      23     140 ..     100     207 ..      92     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.73
                 TBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
        MeaB 215 geGidelvdaieehrevlkktGllekrrrerakeelrelvedellkr 261
                  + +++l ++++   +++ + G+ + ++++r+   +++ + del++ 
  CDO69506.1  46 VKLVAQLRQKVKTKVKAALEGGADKGKEQNRRF-VVQKAIFDELVQL 91 
                 556788999999999999888888888876655.4567777777765 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1e-06
                 GGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT CS
        MeaB  23 lakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleelavdegvfiRslpsrGalGGlaaktrevvllleaaG 121
                  +k G+++v+   G+ G Gk t+  +l++ +++rG +  ++  D   +f  G+   D++R +  +++  +++ s +       ++ +++  v+ +    
  CDO69506.1 100 KPKKGQSNVIMAVGLQGNGKTTTCTKLAVYYQKRGFKSCIVCAD---TFRAGAF--DQTRQSATKAK-VAYFGSYTE---TDPVTIAAQG-VAKFKKER 188
                 5789*************************************988...6889997..9**97776655.556655543...4455555554.45567789 PP

                 -SEEEEEEESSTTHHHHHH CS
        MeaB 122 fDvvlietvGvGqsevdva 140
                 fDv++++t G  + e ++ 
  CDO69506.1 189 FDVIIVDTSGRHKQESELF 207
                 *********9988776543 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.7e-06    0.0097       1     112 [.     112     230 ..     112     246 .. 0.69
   2 ?    0.4   0.1      0.81   8.1e+02      38      63 ..     307     332 ..     300     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.7e-06
                 EE-TTSSHHHHHHHHH...HHHTEE.EEEHHHHHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETTEEEESS CS
      AAA_17   1 lGgPGsGKgtqceklv...ekygft.hlsaGdllreeakrggl.akardemrklpleekkelqkeaaekiaeea..kkkgvlvdghprikeqagfldgl 92 
                 +G+ G GK+t c kl+   +k gf+  +   d +r+ a ++   + ++ +++      + +   +aa+ +a+ +  + + ++vd+  r k+++++++++
  CDO69506.1 112 VGLQGNGKTTTCTKLAvyyQKRGFKsCIVCADTFRAGAFDQTRqSATKAKVAYFGSYTETDPVTIAAQGVAKFKkeRFDVIIVDTSGRHKQESELFKEM 210
                 799************955556699945888*****9997776533445555544444444444455555555441144779*******99999988887 PP

                 HHHHHHHH..SEEEE.EE--H CS
      AAA_17  93 pkevleelkpdaiil.leadp 112
                   ++ e +kp++ ++ l+a+ 
  CDO69506.1 211 V-QIGEAVKPNMTVMiLDASI 230
                 7.599*****76555377765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.81
                 TSHSSHHHHCTSHHHHHHHHHHHHHH CS
      AAA_17  38 glakardemrklpleekkelqkeaae 63 
                 gl+++ +em++ + +++ke+ k+++e
  CDO69506.1 307 GLVEHMQEMATQNPDKQKEMAKKLEE 332
                 77888888888888888888888766 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.6   3.6e+03      64      99 ..       4      38 ..       2      62 .. 0.56
   2 !   16.1   0.0     9e-06    0.0089       9      87 ..     116     258 ..     108     321 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.6
                HHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHH CS
                xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 64 ealgkkkall...lkiagvvlnrvdgeneetllkealee 99
                ++lg+k++ +   l+ a vv+ +v       llke ++ 
  CDO69506.1  4 ADLGRKLNAAlqsLNRAPVVDEKVLDA----LLKEVCAA 38
                566666655566777777777777544....33333333 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 9e-06
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G GKTt++++La++ ++rg++   v aD+ +  ++  ++++    +                                                     
  CDO69506.1 116 GNGKTTTCTKLAVYYQKRGFKSCIVCADTFRAGAF--DQTR----Qsatkakvayfgsytetdpvtiaaqgvakfkkerfdviivdtsgrhkqeselfk 208
                 88*******************99998887655444..2222....122335556666666666666666666666666666666666666666666666 PP

                 ..................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS. CS
                 ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..................dlkrllellealgkkkalllkiagvvlnrvdge 87 
                                   d+ ++++ +ea  + ++   ++  +++++ dg 
  CDO69506.1 209 emvqigeavkpnmtvmilDA-SIGQAAEAQARAFKESADFGAIIVTKMDGH 258
                 66666666666666665544.334444444444444455555555555555 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.3   3.3e+03      18      63 ..      14      54 ..       8      66 .. 0.62
   2 !   14.1   0.0   1.6e-05     0.016      12      86 ..     124     193 ..     115     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.3
                HTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S CS
      Fe-ADH 18 lkklgakralivtdkgslkksglldkvlesleeagievtvfdgvep 63
                l++l+  ra +v d+++l    ll++v ++l e++++v+++ + ++
  CDO69506.1 14 LQSLN--RAPVV-DEKVL--DALLKEVCAALLESDVNVKLVAQLRQ 54
                55553..55444.44445..35788888888888888887766655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.6e-05
                 GGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEE CS
      Fe-ADH  12 eelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvvi 86 
                 ++l+ + +k g+k++++ +d + +   g++d+ ++s ++a+  v+ f+  ++  +++  ++++a +++e++dv+i
  CDO69506.1 124 TKLAVYYQKRGFKSCIVCADTFRA---GAFDQTRQSATKAK--VAYFGSYTETDPVTIAAQGVAKFKKERFDVII 193
                 6788899999*9899999999855...*********96555..55668888889999*****************8 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.4e-05     0.024      14     110 ..     104     204 ..      95     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh.Pey.eeilkadpkkaseltqkdaselvekllqeaiengynii.vegtlrspd 108
                  +  +i+ +G +G GK+++ ++l+ + + r+ +   + +D++R+    +  +++ ka+++ + ++t+ d  +++++ +++  ++++++i v++  r+ +
  CDO69506.1 104 GQSNVIMAVGLQGNGKTTTCTKLAVYYQkRGFKSCIVCADTFRAGAfDQTrQSATKAKVAYFGSYTETDPVTIAAQGVAKFKKERFDVIiVDTSGRHKQ 202
                 666778888******************9777789999******8540333034445799999*************************762676666665 PP

  Zeta_toxin 109 vv 110
                 + 
  CDO69506.1 203 ES 204
                 55 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   2.7e-05     0.027      19      99 ..     107     199 ..     102     245 .. 0.72
   2 ?   -0.7   0.1      0.97   9.6e+02     150     177 ..     311     337 ..     306     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.7e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag.grviglAptgkaAkvLaeelgieastiakllkrlk...........grarlepg..tllivDEagm 99 
                  v +++G  G GKtt+ ++l+  ++++g ++ i++A t +a +  ++   ++ + +a + + ++           +  +++++  +++ivD +g 
  CDO69506.1 107 NVIMAVGLQGNGKTTTCTKLAVYYQKRGfKSCIVCADTFRAGAFDQTRQSATKAKVAYFGSYTEtdpvtiaaqgvA--KFKKErfDVIIVDTSGR 199
                 58899**********************8678889999998876544433333344444444444566777777543..33333358888887765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.97
      AAA_30 150 eLtevvRqkeseeraaalalregdaeea 177
                 +++e+  q+ ++++++a++l+eg+ +  
  CDO69506.1 311 HMQEMATQNPDKQKEMAKKLEEGKLS-I 337
                 577777888899***********987.3 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0029       2.9      21      62 ..      94     143 ..      59     156 .. 0.73
   2 ?    3.6   0.1      0.06        60     125     163 ..     181     223 ..     145     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0029
                 ..........TTSEEE.EEESTTSTHHHHHHHHHHHH-S.....-EEEEES CS
      ResIII  21 s........krdkrgl.ikmaTGtGKTlvaaklierllkkgkeekflflvp 62 
                          k++ +++  +   G GKT +++kl+ +++k g  + +++ ++
  CDO69506.1  94 PgiepykpkKGQSNVImAVGLQGNGKTTTCTKLAVYYQKRG-FKSCIVCAD 143
                 255554443344433336677899***********999864.456666665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.06
                 ..HHHTTT-SEEEEETGGGTTS.....TTTHHHHHT---SEEE CS
      ResIII 125 seellrdrfdviiiDEaHrlgak....kswreilekfkeavll 163
                   +++++rfdvii+D + r +++    k++ +i e++k+++ +
  CDO69506.1 181 VAKFKKERFDVIIVDTSGRHKQEselfKEMVQIGEAVKPNMTV 223
                 567899*********9877777644655999999998888765 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0019       1.9      90     118 ..     179     207 ..     106     219 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
                 HHHHHHHHHH-SEEEEE--SS--HHHHHH CS
        MipZ  90 eelvadleaeldfividtPGsdsalsrla 118
                 + +++  ++++d+i++dt G++++ s l 
  CDO69506.1 179 QGVAKFKKERFDVIIVDTSGRHKQESELF 207
                 33444456789999999999999877665 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00068      0.67      12      40 ..     116     144 ..     107     164 .. 0.85
   2 ?   -0.1   0.0      0.78   7.8e+02     115     126 ..     186     197 ..     163     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00068
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDp 40 
                 G GKTTt+++la+   k+g k  +v +D+
  CDO69506.1 116 GNGKTTTCTKLAVYYQKRGFKSCIVCADT 144
                 88*******************99998886 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.78
      AAA_31 115 kdeYDyiiiDcp 126
                 k+++D+ii+D++
  CDO69506.1 186 KERFDVIIVDTS 197
                 456*******86 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0034       3.4      25      51 ..     319     345 ..     315     346 .. 0.87
   2 ?    2.2   0.0      0.16   1.6e+02      40      49 ..     425     434 ..     417     436 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0034
    HTH_ParB  25 deelqlqlaekiieegLsVRetEklvr 51 
                 ++++q+++a+k  e +Ls R+  + ++
  CDO69506.1 319 NPDKQKEMAKKLEEGKLSIRDWREQIQ 345
                 679*****************9887765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.16
    HTH_ParB  40 gLsVRetEkl 49 
                 g sVRe+E+l
  CDO69506.1 425 GTSVREVEDL 434
                 78******98 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.23      10      52 ..     103     150 ..      97     229 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
                 ..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--.....EEEEEHHHH CS
       6PF2K  10 knsklvivlvGLpargKtyiskkltrylkwlgvr.....tkvFnvgky 52 
                 k +  vi+ vGL   gKt++ +kl  y +  g++     + +F +g +
  CDO69506.1 103 KGQSNVIMAVGLQGNGKTTTCTKLAVYYQKRGFKscivcADTFRAGAF 150
                 556678899******************996666511111345555543 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.0      0.01        10       6      41 ..     113     148 ..     108     256 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.01
                 --TTSSHHHHHHHHHHHH...GGGEEEEEEEEE--- CS
    NTPase_1   6 GppGvGKtTlvkkvlellkssgvkvgGfyteevreg 41 
                 G +G GKtT + k++   +++g+k + + +   r g
  CDO69506.1 113 GLQGNGKTTTCTKLAVYYQKRGFKSCIVCADTFRAG 148
                 788999999999999999888877665555444443 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.027        26       3      38 ..     108     143 ..     106     174 .. 0.85
   2 ?    3.0   0.1     0.048        48      22      83 ..     181     243 ..     173     259 .. 0.67
   3 ?    2.2   0.2     0.081        81     161     203 ..     304     346 ..     292     350 .. 0.82
   4 ?   -1.6   0.0       1.2   1.2e+03     131     172 ..     407     448 ..     406     464 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.027
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  vi+  G  G GKtt  + +av+  + g k  ++  D
   CDO69506.1 108 VIMAVGLQGNGKTTTCTKLAVYYQKRGFKSCIVCAD 143
                  78889999*******************999999988 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.048
                  HHHHHHTTS-EEEEE-STTTHHHHHHTS--BSS-EEETSSEEEEE--HH.HHHHHHHCCHHGG CS
  ArsA_ATPase  22 avklsekgkkvllistDPAhslsDsfdqklgkeptkvkeNLsavEidpe.veleeakqevqke 83 
                   +k  +++ +v+++ t   h     + +++ +   +vk N++++ +d++  +++ea+ +++ke
   CDO69506.1 181 VAKFKKERFDVIIVDTSGRHKQESELFKEMVQIGEAVKPNMTVMILDASiGQAAEAQARAFKE 243
                  445667777788888888887665555667788888888888888888865555555555554 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.081
                  HHHHHHHHHCCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHTS CS
  ArsA_ATPase 161 klsplakqlvkllglggvsieealeeleetkeeikkveeiltd 203
                   ++ l+++++++ +    + +e++++lee k +i++ +e++++
   CDO69506.1 304 DVQGLVEHMQEMATQNPDKQKEMAKKLEEGKLSIRDWREQIQN 346
                  477888889888777778888******************9986 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.2
                  ESBSCCHTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CS
  ArsA_ATPase 131 DtaPTGhtlrllslpevleklleklvklkeklsplakqlvkl 172
                  D  PTG t r+ ++ +  +  ++++ +l  + + +a++ ++ 
   CDO69506.1 407 DGKPTGLTWRVTRVARGSGTSVREVEDLLCQYRMMANMAKQA 448
                  677999999999999999998888777777666666665442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      758  (0.0422779); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 3005.72
//
Query:       CDO69507.1  [L=95]
Description: hypothetical protein BN946_scf184785.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.4    5.8   8.3         11    5.4   8.3    1.2  1  DUF2884   Protein of unknown function (DUF2884)


Domain annotation for each model (and alignments):
>> DUF2884  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.3   0.00064        11     150     181 ..      19      53 ..       9      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.00064
     DUF2884 150 iGsilsalgsemlesegdn...leafeqrmeklge 181
                  G+ +++++++m++++g +   +e++++ m+++g 
  CDO69507.1  19 SGGGMQEMMKAMMQGQGGDqfdMEEMQRMMSQMGG 53 
                 5899***********99988***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 591.65
//
Query:       CDO69508.1  [L=357]
Description: hypothetical protein BN946_scf184785.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-47  157.0   0.1    1.1e-19   70.0   0.1    3.3  3  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    6.9e-27   93.4   3.5    7.1e-27   93.4   1.7    1.9  2  PABP      Poly-adenylate binding protein, unique domain
     0.0027   16.8  17.3      0.011   14.8   0.5    2.2  2  DEC-1_N   DEC-1 protein, N-terminal region
      0.004   17.3   0.0        1.9    8.6   0.0    3.5  3  RRM_7     RNA recognition motif
  ------ inclusion threshold ------
       0.21   11.4   0.0        0.8    9.5   0.0    1.8  2  DUF1494   Protein of unknown function (DUF1494)


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   5.4e-20   1.9e-16       1      69 [.      47     116 ..      47     117 .. 0.98
   2 !   70.0   0.1   3.1e-23   1.1e-19       1      67 [.     135     201 ..     135     203 .. 0.98
   3 !   23.7   0.0   8.8e-09   3.2e-05       1      30 [.     217     246 ..     217     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 5.4e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+Vg L p+vte +L e+F+ +Gp+ si+++rd  t++s g+a+V++ +  d e+Ale+ln   ++gr +
  CDO69508.1  47 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDaVTRRSLGYAYVNYLNAADGERALEQLNYSLIKGRAC 116
                 8******************************************************************986 PP

  == domain 2  score: 70.0 bits;  conditional E-value: 3.1e-23
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                 +f++nL + ++++ L++ F  fG + s+k+ +de+g+skg++fV +e+ e+Ae A++a+ng+ l+++
  CDO69508.1 135 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDK 201
                 8**************************************************************9998 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 8.8e-09
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksikl 30 
                 ++V+n+ p+vt++e  +lF++fG+i+s+ l
  CDO69508.1 217 IYVKNVDPEVTQDEFLKLFGPFGRITSAVL 246
                 8************************99876 PP

>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   3.8e+03      34      43 ..     192     201 ..     176     210 .. 0.71
   2 !   93.4   1.7     2e-30   7.1e-27       2      68 .]     275     341 ..     274     341 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
        PABP  34 KITGMLLemd 43 
                  + GMLL   
  CDO69508.1 192 AVNGMLLNDK 201
                 5779999744 PP

  == domain 2  score: 93.4 bits;  conditional E-value: 2e-30
        PABP   2 selakaspeqqkqiLGerLypkiqklnpelAgKITGMLLemdnsellellesdeeLrekveeAievl 68 
                 ++la+asp +qkq+LGe +y +i+  +pelAgKITGMLLemdn ell+lle++e++++kv+eA++vl
  CDO69508.1 275 AALANASPMEQKQMLGEVIYMRIAPSQPELAGKITGMLLEMDNTELLHLLENQESMNAKVNEALAVL 341
                 579*************************************************************997 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3  10.5    0.0012       4.1     116     158 ..      13      58 ..       5      83 .. 0.70
   2 !   14.8   0.5   3.1e-06     0.011      77     179 ..     209     307 ..     187     330 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
     DEC-1_N 116 aapapalaaapp.papapvp.ddpapapaapqaaaf.affnpanld 158
                 a p  a aa pp papapv+ ++p p+ +ap+a+ +   ++p+  +
  CDO69508.1  13 AVPHVAEAAVPPpPAPAPVAyNPPPPTVSAPSASLYvGELDPTVTE 58 
                 56777777766559*****945558888889777665667776544 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 3.1e-06
     DEC-1_N  77 nlqalpqdlllppmdlgpqvGaalqsllplqsldgllGaaapapalaaapp.papapvpddpapapaapqaaafaffnpanldassllgq..llaqlpa 172
                 +++a+  ++ + + d + +  ++l+ + p++ +++ +      p   a  p  + a  + +pap+ + p+ +a a+ n + +++  +lg+  ++   p+
  CDO69508.1 209 EMKAQFTNIYVKNVDPEVTQDEFLKLFGPFGRITSAVL----QP---ARGPaAPGAGQASTPAPVGDVPTITAAALANASPMEQKQMLGEviYMRIAPS 300
                 55555555555554444444556666666665554433....23...33331334677899********99999***************9543445577 PP

     DEC-1_N 173 vpaipag 179
                  p+++  
  CDO69508.1 301 QPELAGK 307
                 7777654 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.031   1.1e+02       2      29 ..      45      72 ..      44     100 .. 0.85
   2 !    8.6   0.0   0.00054       1.9       4      68 ..     135     191 ..     133     212 .. 0.74
   3 ?    0.9   0.0      0.14     5e+02       4      29 ..     217     242 ..     214     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.031
       RRM_7  2 rkvFvGGlPiDiteeelkatfkefgkvl 29
                  ++vG l + +te+ l + f+  g+v+
  CDO69508.1 45 ASLYVGELDPTVTEAMLFEIFNMIGPVA 72
                6689*******************99985 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00054
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68 
                 +F+  l   i++++l++tf +fg+vl         k ++ e+ +  kgy f+ +e+ ++ ++ ++
  CDO69508.1 135 IFIKNLDEQIDNKALHDTFAAFGNVLSC-------KVATDEHGR-SKGYGFVHYETAEAAETAIK 191
                 89999999***************99732.......222222222.46888888888777666655 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvl 29 
                 ++v  + +++t++e  + f+ fg+++
  CDO69508.1 217 IYVKNVDPEVTQDEFLKLFGPFGRIT 242
                 788889999**************875 PP

>> DUF1494  Protein of unknown function (DUF1494)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.48   1.7e+03      82     100 ..     164     182 ..     115     213 .. 0.61
   2 ?    9.5   0.0   0.00022       0.8      69     118 ..     285     334 ..     275     347 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.48
     DUF1494  82 vyvdpelaGevaGtlhydt 100
                 v +d +   +  G++hy+t
  CDO69508.1 164 VATDEHGRSKGYGFVHYET 182
                 4444444444556666655 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00022
     DUF1494  69 eedvlssvifdrGvyvdpelaGevaGtlhydtirkelelivaslkeeakq 118
                 ++++l  vi+ r   ++pelaG+++G+l     ++ l+l  + +  +ak 
  CDO69508.1 285 QKQMLGEVIYMRIAPSQPELAGKITGMLLEMDNTELLHLLENQESMNAKV 334
                 4578899*********************9888888888877666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 2171.68
//
Query:       CDO69509.1  [L=258]
Description: hypothetical protein BN946_scf184785.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-54  183.5   7.7      5e-54  183.2   7.7    1.0  1  SCAMP     SCAMP family
     0.0098   16.0   0.0      0.016   15.3   0.0    1.4  1  Nup54     Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> SCAMP  SCAMP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   7.7   5.5e-58     5e-54       1     172 [.      64     233 ..      64     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 5.5e-58
       SCAMP   1 enNwPplplpvkplfyqdieeeIpeefqklvklayylwlvlvltlvlNiiavlallisgssek.kflglailylllftpasfvlwyrplYkafrsdssf 98 
                 +nNwPp    ++pl++++i+eeIp+ +q l++++y+lwlvl+ tlv+N++a++++l+sgss++ ++lg +i yl+++tp+sf+lwyrp+Y+ +++++++
  CDO69509.1  64 RNNWPP----FFPLIFHSIQEEIPQASQPLITRLYQLWLVLAGTLVVNMVACICILASGSSNGgSDLGSSIGYLIFITPLSFLLWYRPIYNGYMKEQAL 158
                 69****....***************************************************94599********************************* PP

       SCAMP  99 nflvfffvfffqlvfsiiqavGipgsglaGlitaislf.asniavgillliiailftveavlsllllkkvhklyr 172
                 +++++ff+ +f+l+fs+++++Gip++g+aGli++i+++ + +  ++i+ +++++ ++v++v+ ++++++++ +++
  CDO69509.1 159 YYYLYFFFGGFHLLFSVYMIIGIPSTGSAGLIQTIQAYtKPSLPAAIVGTVATVGWIVQGVGLAYYYRQIWAHHK 233
                 **************************************99999****************************9986 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06     0.016      64     103 ..      25      64 ..      17     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS CS
       Nup54  64 qkhqletsvrlekakkrhvelshRllrllrkleilrsrgy 103
                 +++++++++rle++++r+  l++R  +l++k+e +r++g+
  CDO69509.1  25 DAQSTTNATRLEEIRQRELDLERREQELAQKQEHIRRHGR 64 
                 567899***************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1710.30
//
Query:       CDO69510.1  [L=378]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-11   44.2   0.1    4.6e-11   42.8   0.1    1.8  1  DPBB_1          Lytic transglycolase
      6e-05   22.9   0.0    0.00015   21.6   0.0    1.6  1  Barwin          Barwin family
  ------ inclusion threshold ------
       0.65    9.3  19.8      0.074   12.4  15.3    1.6  2  NOA36           NOA36 protein
       0.67    8.1  11.3       0.86    7.7  11.3    1.1  1  Nop14           Nop14-like family


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1     1e-14   4.6e-11       3      83 .]     278     375 ..     276     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1e-14
                 EEEEEE-.CCC..-TTSSB--TTS-EEE-SSS............-TT-EEEE..TT.--EEEEEEEE----.STTECEEE-HHHHHHHT-TTTS-EEEE CS
      DPBB_1   3 agsasly.kdg..tacGecyevkcltaahktl............plgtycrv..ls.gksvtVtitDrgpf.ppgrhiDLSkaAfeklakpraGvipVk 82 
                  g+a+++ ++g   acG++   + ++aa +t                ++++    + +ksvtVti D +p    ++ iDLS+ Af+++a +  G +p++
  CDO69510.1 278 SGNATFFyQGGraGACGKVHADSDFVAAMQTKrygdlsaesplcG--KQVKItnTKnNKSVTVTIADACPTcGGENDIDLSEGAFTQIATIPEGEVPIS 374
                 689999955558899***************99*******998543..44444445569*************556789********************97 PP

                 E CS
      DPBB_1  83 y 83 
                 +
  CDO69510.1 375 W 375
                 5 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.3e-08   0.00015      59     100 ..     320     365 ..     305     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.3e-08
      Barwin  59 scGkclrvtntatnaqvtvrivdqcsng....Gldldvalfnkldt 100
                  cGk +++tnt++n++vtv i d c        +dl +  f+++ t
  CDO69510.1 320 LCGKQVKITNTKNNKSVTVTIADACPTCggenDIDLSEGAFTQIAT 365
                 6***********************9876333357777888888876 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  15.3   1.7e-05     0.074     204     301 ..      85     193 ..      45     198 .. 0.63
   2 ?   -2.8   0.1      0.67     3e+03     184     219 ..     311     350 ..     293     356 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
       NOA36 204 kyeknkaipcpkcgyetqetkdls...lstrslkfgrqkqadgsddddddeedsdydaylkalasg..ddeddegdeddddddd......eedddeeed 291
                   ekn+a+ c   ++ ++    +s    s+ ++    q+ +++ dddd+d++d + ++  ++ a +  dded++ d ddd+++       +     ++d
  CDO69510.1  85 TLEKNRAPQCNPANHVSSSVSSVShtaTSSSAHPASTQNLSTTGDDDDGDCDDEEPTSTASSAAPTatDDEDEDCDADDDEHTStasaaaAATPTADDD 183
                 569999999999999888887777211455667788999999999999999998887776666555225555555555555444333322222334555 PP

       NOA36 292 dedeeeeeee 301
                 ded ++e++e
  CDO69510.1 184 DEDCDDENDE 193
                 5555555544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.67
       NOA36 184 ysclrckacycedhvrrkgfkyeknkai....pcpkcgye 219
                 y  l   +  c + v+    k +k+ ++     cp cg e
  CDO69510.1 311 YGDLSAESPLCGKQVKITNTKNNKSVTVtiadACPTCGGE 350
                 5555666667777777777777776554222258888765 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.3   0.00019      0.86     313     400 ..     121     207 ..      83     269 .. 0.37

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00019
       Nop14 313 e....asaDdldddfvleeeeeeeefglgkglkataeeeeeededdfeedddlveseseeee..eeeeedeeeeedeeeeeeeeededdlsdle 400
                 +     ++Dd dd+   +ee +++     ++ + ta   ++eded + +dd++ ++ s +     + ++d+e+ +de++e +++    +  +l 
  CDO69510.1 121 TqnlsTTGDD-DDGDCDDEEPTST-A---SSAAPTA--TDDEDEDCDADDDEHTSTASAAAAatPTADDDDEDCDDENDEPSSSAPVVHTTSLA 207
                 0233233333.2222222211111.1...1111122..12333333333333333333322222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1361  (0.0759105); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.36s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 2266.63
//
Query:       CDO69511.1  [L=297]
Description: hypothetical protein BN946_scf184785.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   11.6   0.0       0.21   10.7   0.0    1.6  1  NAD_binding_4  Male sterility protein


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.2e-05      0.21     164     256 ..     137     258 ..      29     259 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.2e-05
                    -EEEETTTCCCHHHHHHHHHHHHHHHHHH.HH---EEEEEE-EEE-......................-SSST---TTSHHHHHHHHHHHH-EEES CS
  NAD_binding_4 164 deraklkglpntYeqsKalaEklvrearr.rsglpvvivRpsiitg......................esktGwingsdlgirgllgliakgvlpe 236
                     e  +   +p +Y  +K +aE  +++ ++ + +++ v +Rps i+                       +   G +  s  ++++l gl  +   pe
     CDO69511.1 137 AEDCNRPLVPAGYIETKREAEAGIEHVMQsNPNYRGVYIRPSLIYHphyrpiispiaalldlsatihsKAPAGFPTPSA-LLQTLGGLLPRPSRPE 231
                    55666677899***********99987741457889*********9999888888888888888886555557777777.7777777777777777 PP

                    -SB---TT.......--EEEHHHHHHH CS
  NAD_binding_4 237 ilgdkeav.......ldlvpvDyvana 256
                    +++d+  +       +  + vD+va+a
     CDO69511.1 232 LTPDSPLHslaraltIPPIHVDHVAEA 258
                    777766556667666666667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.60
# Mc/sec: 1503.30
//
Query:       CDO69512.1  [L=347]
Description: hypothetical protein BN946_scf184785.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-43  147.0   0.0    5.8e-43  146.6   0.0    1.1  1  ADK             Adenylate kinase
      6e-19   68.8   0.0    1.3e-18   67.7   0.0    1.6  1  AAA_17          AAA domain
    2.3e-14   53.1   0.0    3.7e-14   52.4   0.0    1.3  1  ADK_lid         Adenylate kinase, active site lid
    6.1e-06   26.8   0.0    1.7e-05   25.4   0.0    1.7  1  AAA_18          AAA domain
     0.0011   19.1   0.3     0.0049   17.0   0.1    2.3  2  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.028   14.3   0.2      0.059   13.3   0.0    1.6  2  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.16   12.1   0.0       0.32   11.1   0.0    1.5  1  MMR_HSR1        50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   2.3e-46   5.8e-43       2     149 ..      94     276 ..      93     278 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 2.3e-46
                 EESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   2 lGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgfllDGfPRtveqaealeelleeek 100
                  G PgaGKGt +++lvkky ++ +stGdllR++++++te+G  a++++  g l+pd++++k+v+++l+   ++++++lDGfPRt+ q+e l++ l++++
  CDO69512.1  94 FGKPGAGKGTLTARLVKKYDIVSMSTGDLLRQHIAEKTEVGLLAESIVASGGLLPDDIMLKVVTSKLDVL-QNRHWILDGFPRTLGQGELLDKHLASKE 191
                 79******************************************************************88.99************************** PP

                 SEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 101 vkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkk 149
                 + l l+++ldvp++v+++R+++                                    Dn+e  ++Rle+++++t+pl+ yy+ k
  CDO69512.1 192 TPLSLIVNLDVPDDVILSRISDrwvhlpsgrvynlsynppkvpghddetgepltkrpdDNPEIFARRLEQFYASTSPLLAYYSAK 276
                 **********************************************************************************987 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   5.1e-22   1.3e-18       1     122 [.      94     214 ..      94     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 5.1e-22
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTT...TSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrg...glakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkev 96 
                 +G PG+GKgt+ ++lv+ky++  +s+Gdllr+ ++++   gl  a++ ++ + l +++ ++k +  k+    +++ +++dg+pr+  q ++ld+  +  
  CDO69512.1  94 FGKPGAGKGTLTARLVKKYDIVSMSTGDLLRQHIAEKtevGL-LAESIVASGGLLPDDIMLKVVTSKLDVL-QNRHWILDGFPRTLGQGELLDKHLAS- 189
                 699****************************99988853344.67888889***************99985.7899***************9999985. PP

                 HHHH..SEEEEEE--HHHHHHHHHHH CS
      AAA_17  97 leelkpdaiilleadpeeilerrlkd 122
                  +e   ++i+ l++++++il+r   +
  CDO69512.1 190 -KETPLSLIVNLDVPDDVILSRISDR 214
                 .66666**************998766 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.4e-17   3.7e-14       1      36 []     214     249 ..     214     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.4e-17
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 R+v+  +Gr+Y++ +npPkv+g +D++GepL++R+D
  CDO69512.1 214 RWVHLPSGRVYNLSYNPPKVPGHDDETGEPLTKRPD 249
                 9***********999********************9 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   6.5e-09   1.7e-05       1     113 [.      91     214 ..      91     222 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.5e-09
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenssaleegknlvidghlaeleseaakd 93 
                 ++  G+pG+GK tl+ +L k+  +     g+ lr+ ++e+  +    +    +  +  d+ +l+++ ++l+        + ++++dg++  l + ++ d
  CDO69512.1  91 VIMFGKPGAGKGTLTARLVKKYDIvsmstGDLLRQHIAEKTEVGLLAESiVASGGLLPDDIMLKVVTSKLDVLQ-----NRHWILDGFPRTLGQGELLD 184
                 6778****************965587777444444433332222222222224444444444445555555543.....5899************9999 PP

      AAA_18  94 ikk..........vvLtaspeelleRlekR 113
                 ++           v L++++++ l R+++R
  CDO69512.1 185 KHLasketplsliVNLDVPDDVILSRISDR 214
                 99999*******9***************99 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.9e-06    0.0049       2      41 ..      91     130 ..      91     217 .. 0.84
   2 ?   -1.8   0.0       1.3   3.3e+03      49      69 ..     319     339 ..     286     346 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.9e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtd 41 
                 v++ G pG+GK tl  rl+kk + v  s+ +l+r++ +++
  CDO69512.1  91 VIMFGKPGAGKGTLTARLVKKYDIVSMSTGDLLRQHIAEK 130
                 79********************999888888888776644 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      AAA_33  49 trvldrlyqilnelarkalsa 69 
                 +r  +   + l+++ ++++++
  CDO69512.1 319 KRRHSLSDAVLAQREQETRKK 339
                 333333333444444444444 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.059       7      36 ..      92     121 ..      87     141 .. 0.78
   2 ?   -3.5   0.0       3.2   8.3e+03     137     165 ..     312     341 ..     284     344 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
  Ploopntkinase3   7 ylvGqPGaGkstlmaeltkgfdrskveqee 36 
                      + G+PGaGk tl a l k +d  ++++ +
      CDO69512.1  92 IMFGKPGAGKGTLTARLVKKYDIVSMSTGD 121
                     478*******************99888555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
  Ploopntkinase3 137 vqneswvkgrlsasrk.ladalikaaekgk 165
                     vq+   vk r s s   la+  +++++kg 
      CDO69512.1 312 VQERQDVKRRHSLSDAvLAQREQETRKKGE 341
                     566666777766554314555555556655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.32       1      27 [.      90     116 ..      90     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                 EEEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivs 27 
                 +v+ +G+p +GK tL  +l+++  ivs
  CDO69512.1  90 RVIMFGKPGAGKGTLTARLVKKYDIVS 116
                 6899****************9977776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2199.49
//
Query:       CDO69513.1  [L=301]
Description: hypothetical protein BN946_scf184785.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-51  172.9   0.0    4.6e-32  111.3   0.0    2.8  2  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    1.4e-06   28.9   0.0      0.037   14.7   0.0    2.6  2  Methyltransf_25  Methyltransferase domain
    0.00015   21.6   0.0     0.0003   20.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
     0.0004   21.0   0.1       0.28   11.8   0.0    2.5  2  Methyltransf_11  Methyltransferase domain
    0.00053   20.7   0.0       0.03   15.1   0.0    2.3  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.9e-19   6.9e-16       6      95 ..      12     117 ..       8     170 .. 0.85
   2 !  111.3   0.0   1.3e-35   4.6e-32     122     218 .]     200     301 .]     184     301 .] 0.91

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.9e-19
  Methyltransf_PK   6 yekaiaYWesveadvdGvLGGy...gavskiDvkgsrkflkklkkeslp.............gkrevkvaldcGaGiGrvtknlLlkllskvDl 83 
                       e++i+YWes  a+ dGvLG      +++++D  gsr+fl  l  e  +              +++ ++ald+GaG+Grvt ++Ll+l+s+v l
       CDO69513.1  12 VEDGIKYWESQPASYDGVLGKTfiaRSLPRVDALGSRQFLMYLIPELCTipsavrplhvpeeLANKRTRALDVGAGVGRVTADVLLHLFSDVVL 105
                      589*****************9745449*************99987754445666667777655678899************************* PP

  Methyltransf_PK  84 vepvekflekak 95 
                      vepve f+++a 
       CDO69513.1 106 VEPVEPFIAEAL 117
                      ********9874 PP

  == domain 2  score: 111.3 bits;  conditional E-value: 1.3e-35
  Methyltransf_PK 122 rYdliWiqWcvghLtDedlvaflkrckkalkp..nGlivvkenvakee...kdelDkeDssvtrseaklkklfkkagLklvaeelqkglPkely 210
                       +d++W+qWc+g L+D dlvaf++r+k al++   Glivvken+ +e      ++D++Dss+trs+   kk+f++agL++++e+ q+g+P+ ly
       CDO69513.1 200 GFDVVWCQWCLGALSDPDLVAFFRRSKAALRDpsRGLIVVKENLCSESgepRAVFDESDSSLTRSDLAWKKAFADAGLRVIHEQVQHGFPEGLY 293
                      58****************************96447********98765222469**************************************** PP

  Methyltransf_PK 211 pvkmyaLk 218
                      +vkmyaL+
       CDO69513.1 294 TVKMYALR 301
                      ******96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05     0.037       2      57 ..      82     136 ..      81     184 .. 0.79
   2 !   11.8   0.0   8.3e-05       0.3      61      94 ..     197     230 ..     155     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed 57 
                      Ld+G+G Gr+t++++ +l  ++v+ v++ e ++++a +r +++   ++ + g  e+
       CDO69513.1  82 LDVGAGVGRVTADVLLHL-FSDVVLVEPVEPFIAEALRRGRASATGATSIAGGTEE 136
                      9***********998887.69***************99998766666555555544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.3e-05
                      STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25  61 edgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                       d+ fD+v+++ +l  lsd+dl +++++ + +L+
       CDO69513.1 197 LDSGFDVVWCQWCLGALSDPDLVAFFRRSKAALR 230
                      5789******999***************999997 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   8.4e-08    0.0003      20     158 ..      75     275 ..      63     287 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 8.4e-08
  Methyltransf_23  20 lraggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiae.......................................kakkaqkdqfde 73 
                       +++ r Ld+G+G+G  +++vl   + +v++v++ +  ++  e                                       ++++a  + fd 
       CDO69513.1  75 ANKRTRALDVGAGVGrVTADVLLHLFSDVVLVEPVEPFIA--EalrrgrasatgatsiaggteenpeamapwkgirdksksvTFIQATLQDFDP 166
                      48999**********447777777777*******865444..45589*********99999999999999999888877766555555555522 PP

  Methyltransf_23  74 qeaaepqg...............................kfdlIvlrevlehvpd..ppellrqiatllk.pg.Gylllseplasl........ 124
                             +                                fd++ +  +l+ + d  + + +r+ ++ l+ p  G++++ e l+s         
       CDO69513.1 167 A------RptagasskskvlarvgyspaesdsagddldsGFDVVWCQWCLGALSDpdLVAFFRRSKAALRdPSrGLIVVKENLCSEsgepravf 254
                      2......23334556666777777777777778889999**************963367***********7667******98776544555555 PP

  Methyltransf_23 125 .....kedrllldwlylvpagrhisffsarslkelleea 158
                           + +r                  s  ++k+++ +a
       CDO69513.1 255 desdsSLTR------------------SDLAWKKAFADA 275
                      444442222..................223333333333 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.9e-05      0.28       1      43 [.      82     125 ..      82     186 .. 0.75
   2 !    6.7   0.0    0.0032        12      59      89 ..     198     230 ..     194     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl 43 
                      LdvG+G Gr+++++  +  ++vv v++ + +++ a ++++ +  
       CDO69513.1  82 LDVGAGVGRVTADVLLHLfSDVVLVEPVEPFIAEALRRGRASAT 125
                      8*************95556*************999887777665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0032
                      TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEE CS
  Methyltransf_11  59 dnsfDlvvssevlhhv..edpekalkeiaRvLk 89 
                      d+ fD+v+++++l  +  +d+ ++++  +  L+
       CDO69513.1 198 DSGFDVVWCQWCLGALsdPDLVAFFRRSKAALR 230
                      678*************77777778877766665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.4e-06      0.03       1      93 [.      82     229 ..      82     237 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.4e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.............................. 64 
                      L++G+G+G++++ +l +  +++++ v++ + +i+ a ++ ++     ++    ++++ +  + +                              
       CDO69513.1  82 LDVGAGVGRVTADVLLH-LFSDVVLVEPVEPFIAEALRRGRASATGATSIAGGTEENPEAMA-Pwkgirdksksvtfiqatlqdfdparptaga 173
                      8***********99999.9**************66555555444444333333333333322.2466777777777777777777777777777 PP

  Methyltransf_12  65 .........................ssfDlvvasnvlhhl..kdirevldnirklL 93 
                                               s fD+v++  +l +l  +d+ +++++ +++L
       CDO69513.1 174 sskskvlarvgyspaesdsagddldSGFDVVWCQWCLGALsdPDLVAFFRRSKAAL 229
                      77777777777777777777777777777777777777775555556666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2123.65
//
Query:       CDO69514.1  [L=466]
Description: hypothetical protein BN946_scf184785.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-17   60.9   0.4    1.9e-15   56.6   0.4    2.3  1  Swi3      Replication Fork Protection Component Swi3


Domain annotation for each model (and alignments):
>> Swi3  Replication Fork Protection Component Swi3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.4     1e-19   1.9e-15       1      82 [.     159     228 ..     159     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1e-19
        Swi3   1 kldeerLlsekGlpaLrknfkklkfkgkgheaedlkkllqfyqlWahrLfPkakfkdflekveklgkkkevktyrkelreee 82 
                 klde+rLl+++G+paL+k+ k++k kgkghe             Wah+++P+  f d++++vekl+++k+++ ++  +r+e 
  CDO69514.1 159 KLDESRLLGPDGFPALIKQSKSFKPKGKGHE------------FWAHKMYPNNHFIDTVQRVEKLCHSKRMHIALGVWRDEA 228
                 8******************************............7***********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3258.71
//
Query:       CDO69515.1  [L=92]
Description: hypothetical protein BN946_scf184785.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 633.39
//
Query:       CDO69516.1  [L=180]
Description: hypothetical protein BN946_scf184785.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.3   0.5       0.16   12.3   0.5    2.0  2  TYA       TYA transposon protein


Domain annotation for each model (and alignments):
>> TYA  TYA transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5     9e-06      0.16      31      64 ..      17      52 ..      13      62 .. 0.83
   2 ?   -0.7   0.6       0.1   1.9e+03      34      64 ..     105     137 ..      97     144 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-06
         TYA 31 stkansqqettpassavpenhhhas..pqaaqvpsp 64
                s  ans  +t+p +s v  n+ has  pq++  ++p
  CDO69516.1 17 SKAANSVHPTSPPTSIVIRNNAHASnaPQSSTLRLP 52
                6789*******************9844666555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.1
         TYA  34 ansqqettpassavpenhhhas..pqaaqvpsp 64 
                 an ++    a  a pe + h s   q+a +++p
  CDO69516.1 105 ANEENAEGDAVVASPEINVHPSvdTQSATIQPP 137
                 555555566667778866665411566655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 1176.87
//
Query:       CDO69517.1  [L=348]
Description: hypothetical protein BN946_scf184785.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-08   35.3   0.0    2.3e-08   34.4   0.0    1.5  1  zf-C2HE        C2HE / C2H2 / C2HC zinc-binding finger
    6.4e-08   33.1   3.7      2e-07   31.4   3.7    1.8  1  DcpS_C         Scavenger mRNA decapping enzyme C-term binding
     0.0048   17.6   0.3     0.0048   17.6   0.3    2.4  2  zf-C2H2_4      C2H2-type zinc finger
  ------ inclusion threshold ------
      0.059   13.6   0.1       0.13   12.5   0.1    1.5  1  zinc_ribbon_9  zinc-ribbon
       0.09   13.5   6.8       0.31   11.8   3.9    2.8  2  HIT            HIT domain


Domain annotation for each model (and alignments):
>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   6.3e-12   2.3e-08       3      63 ..     146     210 ..     144     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 6.3e-12
     zf-C2HE   3 eFFvpledlpeelekdgei.....eslseeqskelilktpLkCtrCganfgnkfpkLKeHLeeefe 63 
                 +FF+++++++++++ d e      ++  +e+++  ilk++  C +C+  ++++ +kLK+HL   f+
  CDO69517.1 146 GFFLNIDEVIRWFDPDIEPtyfamKTAIDEDEYAAILKRDPLCPHCD-GQFKTVVKLKRHLTNVFK 210
                 8************88887799999556667777788999999*****.*************98776 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   3.7   5.7e-11     2e-07      17     114 .]      14     137 ..       4     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 5.7e-11
                 EEE-SSEEEEE-SS-SSSEEEEEEESS.......---SGGG-....-TTTTTHHHHHH...HHHHHHHHHTT-T..-EEEEE--SCCCT-......... CS
      DcpS_C  17 vyedekfvvlkDikpkaklhllvipkr.......dikslrdL....tkehlpllkemr...ekakkvieekyne..vdaeelrvgvhyqP......... 90 
                 + +++ +v++kD++pka++h lv+p+        +++++r+L    +++   ll ++r   e+ak  iee++ +  +    + +g+h+ P         
  CDO69517.1  14 ISHTDWTVTIKDAYPKAHYHRLVLPRLylplepdQLRDIRSLlclpREQAKGLLLAIRrdaEVAKREIEEEMLKdhGFTWPIYMGFHALPsleyvppvl 112
                 4567889******************9999995554444444488897777777777761225667778887766886777899****999777777777 PP

                 .-S-S--EEEEE........SS--- CS
      DcpS_C  91 .svyhlHlHvisldfespglkrkkh 114
                   ++h+HlHvis df++ + k+kkh
  CDO69517.1 113 kHLRHVHLHVISGDFQGYYYKKKKH 137
                 7789*************99999887 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3       1.2   4.5e+03      16      24 .]     111     119 ..     106     119 .. 0.83
   2 !   17.6   0.3   1.3e-06    0.0048       3      22 ..     188     207 ..     186     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
   zf-C2H2_4  16 LlrHlkthH 24 
                 +l+Hl+ +H
  CDO69517.1 111 VLKHLRHVH 119
                 579999998 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
   zf-C2H2_4   3 CpiCgksFsskkaLlrHlkt 22 
                 Cp+C++ F++  +L+rHl +
  CDO69517.1 188 CPHCDGQFKTVVKLKRHLTN 207
                 *****************976 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.7e-05      0.13      20      31 ..     184     195 ..     173     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
  zinc_ribbon_9  20 sdvlCPhCgggF 31 
                    +d+lCPhC+g+F
     CDO69517.1 184 RDPLCPHCDGQF 195
                    5789*******9 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.9   8.5e-05      0.31       5      97 ..      10     127 ..       6     128 .. 0.70
   2 ?   -3.0   0.0       3.6   1.3e+04      58      68 ..     201     211 ..     194     229 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.5e-05
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTG....CSGGGCC......HHHHHHHHHHHHHHHHHHHTCT.....TCCCEEEEEEESGGGT-S.... CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkkhl....selhdlt......eeelakllsavkkvakalqkkf.....knkglrvvinngahagqs.... 84 
                 p   + ++d ++ + d  pka  h Lv+p+  l    ++l d++       e  + ll a+++ a++ ++++     k  g++  i  g+ha +s    
  CDO69517.1  10 PHVRISHTDWTVTIKDAYPKAHYHRLVLPRLYLplepDQLRDIRsllclpREQAKGLLLAIRRDAEVAKREIeeemlKDHGFTWPIYMGFHALPSleyv 108
                 55678899999*******************864212246666668888876666677777777777777766888886677777777777777762222 PP

                 ......SSS-EEEEEEC-T CS
         HIT  85 ......vahlHiHviprre 97 
                        +h+H+Hvi++++
  CDO69517.1 109 ppvlkhLRHVHLHVISGDF 127
                 22222257********986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
                 HHHHHHTCTTC CS
         HIT  58 vakalqkkfkn 68 
                 + ++l ++fk+
  CDO69517.1 201 LKRHLTNVFKE 211
                 33444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2439.70
//
Query:       CDO69518.1  [L=454]
Description: hypothetical protein BN946_scf184785.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-74  248.8   0.3    1.5e-74  248.3   0.3    1.2  1  ox_reductase_C  Putative oxidoreductase C terminal domain
    3.3e-22   79.6   0.0    6.3e-22   78.7   0.0    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
     0.0063   16.5   0.0      0.011   15.7   0.0    1.5  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> ox_reductase_C  Putative oxidoreductase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.3   2.5e-78   1.5e-74       1     142 []     213     354 ..     213     354 .. 1.00

  Alignments for each domain:
  == domain 1  score: 248.3 bits;  conditional E-value: 2.5e-78
  ox_reductase_C   1 rylkvvqkmkkiikennlkvvatnaryvsayehaakkawweksisaGpvveqathfcdlsryfgGdvdldtvkaksvewyekaGklskipvdesk 95 
                     rylk+vq mkkii+ennl+v+at+ary++aye++ak++ww+ks+saGp+veq+thfcdlsryfgG+vd+dtv+a+s+ew+e+aGklsk+++desk
      CDO69518.1 213 RYLKAVQMMKKIIEENNLTVMATIARYATAYEAIAKPDWWDKSKSAGPIVEQGTHFCDLSRYFGGEVDMDTVNAHSLEWDENAGKLSKMQIDESK 307
                     9********************************************************************************************** PP

  ox_reductase_C  96 ipederiprltsaswkyksGavGslehavalqGtkystelevladGy 142
                     i+ ++ripr+t+a+wky++GavGs++h valqG++ys+elev+adGy
      CDO69518.1 308 IAPENRIPRVTAATWKYENGAVGSFTHLVALQGQNYSCELEVYADGY 354
                     **********************************************9 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   1.1e-25   6.3e-22       1     120 []      57     210 ..      57     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1.1e-25
                   EEEEEETTSHH..HHHHHHHHHHTTTTE.......EEEEEECSSHHHHHHH....HHHTTHEEESS..........HHHHHTCTTESEEEE-S-G.. CS
  GFO_IDH_MocA   1 lrvaiiGaGki..gskhlrplnesqrle.......evvalldpdaeraeav....aesfgveaysd..........leelladpeidavivatpn.. 72 
                   ++v+++GaG+i  gs+++ p+n+s+r+e       +vval+dp  era av    +e+f+ +ay++          ++++ +++ ++aviv++p+  
    CDO69518.1  57 FNVVFVGAGNImfGSDEG-PWNHSFRFEhklgprlKVVALIDPAIERATAVlqkkCETFVRSAYENtrvyktledfVRNMNKNQMPRAVIVGSPPmf 152
                   79****************.*****************************************************999999999999************* PP

                   ....GGHHHHHHHHHHTT-..EEEEESSS-S....SHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  73 ....gtheelakaaleagk..hvllEKPlat....tveeakelvelaekkgklvsvgy 120
                       + +++++ ++l+ ++  + ++EKP at     + ea++++++ +++g ++svgy
    CDO69518.1 153 rgtlQPGRDIESQILKYFPgvAMFIEKPAATgpasEIPEAFAVAKKINESGTICSVGY 210
                   998888*************99**********9999999******************98 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.8e-06     0.011      22      76 ..     241     293 ..     222     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-06
                     BEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESC CS
  GFO_IDH_MocA_C  22 tragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnae 76 
                     t ++a ak++w++ k ks+G  ++ g+H+ Dl +++ G++   +++ ++  +++e
      CDO69518.1 241 TAYEAIAKPDWWD-KSKSAGPIVEQGTHFCDLSRYFGGEVDMDTVNAHS-LEWDE 293
                     4555667888885.57***********************9999888865.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3066.30
//
Query:       CDO69519.1  [L=219]
Description: hypothetical protein BN946_scf184785.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0029   17.4   2.1     0.0045   16.8   2.1    1.4  1  SKA2             Spindle and kinetochore-associated protein 2
  ------ inclusion threshold ------
      0.017   15.4   4.2      0.027   14.8   4.2    1.2  1  Rx_N             Rx N-terminal domain
      0.088   13.5   6.6       0.13   13.0   6.6    1.2  1  DUF4472          Domain of unknown function (DUF4472)
       0.15   12.2   6.4        0.2   11.8   6.4    1.1  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.29   11.1   6.7       0.38   10.7   6.7    1.1  1  Ax_dynein_light  Axonemal dynein light chain
        0.4    8.5   1.3       0.46    8.3   1.3    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.46   11.1   4.7       0.77   10.4   4.7    1.4  1  YabA             Initiation control protein YabA
       0.59   10.2   2.6       0.74    9.9   2.6    1.1  1  MCU              Mitochondrial calcium uniporter
       0.63    9.7   6.2       0.85    9.3   6.2    1.1  1  DUF484           Protein of unknown function, DUF484
        6.4    6.7  11.4        9.5    6.2  11.4    1.2  1  RRP36            rRNA biogenesis protein RRP36


Domain annotation for each model (and alignments):
>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.1   2.5e-06    0.0045      27      76 ..      90     137 ..      62     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
        SKA2  27 kefqqsypdnaeNpvkLlerlkkvkeelqaLkeqceellaekkelidkir 76 
                 +e+ +  ++   N++kL e+ +++k+el a+ e++e+   +++el+++ +
  CDO69519.1  90 EEMDKVQKRA-SNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQA-Q 137
                 4555555555.6*************************99999999764.3 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   4.2   1.5e-05     0.027      11      55 ..      93     137 ..      89     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
        Rx_N  11 dllaeeakllkgvkeeleklkdeLesiqavLedaeerqikdeavk 55 
                 d+++++a+ ++++ e+ e+lk eL+++   Le ae+rq++  +++
  CDO69519.1  93 DKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQ 137
                 67889999******************************9866655 PP

>> DUF4472  Domain of unknown function (DUF4472)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.6   7.4e-05      0.13      22      91 ..      80     149 ..      70     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.4e-05
     DUF4472  22 lreqheaekfelknkvlalenrvlelelerekaaeeiqslrerlaeleeekkeleeeyvvlkknyqalek 91 
                 +  q+e +k e   kv +  ++v+ l  ++e+++ e +++ erl+++e+ ++el++  +  k ++q + +
  CDO69519.1  80 MAAQAEGQKSEEMDKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQAKGQTQGQGQ 149
                 5679999*************************************************99999988887765 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   6.4   0.00011       0.2      67     133 ..      78     144 ..      63     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
     UPF0242  67 kskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedf 133
                 + + ++ e + +e+ +++++ + ++ +l e++e+Lk el a++e le  ++++ +L +   +++ + 
  CDO69519.1  78 TIMAAQAEGQKSEEMDKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQAKGQT 144
                 44444555555555568999999*******************************9985544444444 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.7   0.00021      0.38     108     167 ..      75     141 ..      65     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
  Ax_dynein_light 108 aFgmrkalqae.qgkselekk......ikeLeeekeelekqvaelkaklealekrekerrqeeekkh 167
                       F+   a qae q+++e++k       +++L e++e+l+ ++  ++++lea+e+r+ e  q++ + +
       CDO69519.1  75 DFNTIMAAQAEgQKSEEMDKVqkrasnVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQAK 141
                      5666666677743333333323336667889999999999999999999999999999888877655 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.3   0.00026      0.46      63     128 ..      80     145 ..      48     164 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00026
  V_ATPase_I  63 leapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeees 128
                 ++a+ e + +e  ++++k  +++++l e++e+lk+el+ ++e  +  e+ ++ l++++++++ +++
  CDO69519.1  80 MAAQAEGQKSEEMDKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQAKGQTQ 145
                 444444444555567777788888888888888888888888888887777777665333332222 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.7   0.00043      0.77      14      68 ..      85     139 ..      68     152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  14 eeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 e q +e ++++++  +++ +l e+n++L++e + + erle +e++++e  +++ +
  CDO69519.1  85 EGQKSEEMDKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQ 139
                 4555566667777778899999*****************5444444433333322 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   0.00042      0.74      27      85 ..      84     139 ..      48     156 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00042
                 XXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCC.CGG CS
         MCU  27 eeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeide.kAe 85 
                  e ++ ++++++ k+ +++++++    +++++l+++l++++e+le +e+ ++e+++ +A+
  CDO69519.1  84 AEGQKSEEMDKVQKRASNVMKLA----EQNERLKAELRAMTERLEAAERRQRELAQaQAQ 139
                 44566677777777777777666....556677778888888888888766665441232 PP

>> DUF484  Protein of unknown function, DUF484
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.2   0.00047      0.85      54     110 ..      90     146 ..      70     152 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00047
      DUF484  54 erireleeelaalmelAraNerlfarllalqldlldarsledvlrrleasarelfla 110
                 e  ++++++ +++m+lA +Nerl a+l+a+++ l +a+  +  l + +a+a+ + + 
  CDO69519.1  90 EEMDKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQAKGQTQG 146
                 5677889999***************************99999988888888876665 PP

>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  11.4    0.0053       9.5      57     113 ..      87     143 ..      83     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0053
       RRP36  57 yrekEleelkkelkkekdkeeekeelkrelqrlesrekerekkererevlkelkkee 113
                 ++ +E+++++k+  +  + +e++e+lk+el+ +++r++++e+++re +  +   k +
  CDO69519.1  87 QKSEEMDKVQKRASNVMKLAEQNERLKAELRAMTERLEAAERRQRELAQAQAQAKGQ 143
                 5678999999999987777999*******************9999866555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1955  (0.109041); expected 358.6 (0.02)
Passed bias filter:                      872  (0.0486363); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 1614.96
//
Query:       CDO69520.1  [L=455]
Description: hypothetical protein BN946_scf184785.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.6   10.2   7.8       0.86    9.6   6.7    1.8  2  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.7   4.8e-05      0.86      22      43 ..     130     151 ..     114     164 .. 0.66
   2 ?   -2.3   0.0      0.25   4.4e+03      16      54 ..     220     258 ..     210     267 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.8e-05
      PRIMA1  22 qcrrypplpppppppppprlls 43 
                  c  +pp   pppppppp l +
  CDO69520.1 130 ICDVPPPPDEPPPPPPPPVLEM 151
                 4666666666666666665533 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.25
      PRIMA1  16 scqeacqcrrypplpppppppppprllsltaaestvspl 54 
                 s++ + + r    l   ++pp +   l   a++ + + +
  CDO69520.1 220 STDLIVDSRVINKLAVAAKPPTARCHLGILAPQQQYCDV 258
                 555666777777777788888877778888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3612.98
//
Query:       CDO69521.1  [L=397]
Description: hypothetical protein BN946_scf184785.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-10   38.2   0.2      3e-09   36.4   0.2    1.9  2  SAP       SAP domain


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.2   1.6e-13     3e-09       5      34 ..     135     164 ..     135     165 .. 0.96
   2 ?   -2.6   0.0      0.28   5.1e+03      14      21 ..     308     315 ..     306     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.6e-13
                 -HHHHHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP   5 tVaeLKeeLkkrGLptsGkKaeLieRLkey 34 
                 tV+eL+ e +krGLp  G Ka Li RL++ 
  CDO69521.1 135 TVNELRREARKRGLPAGGSKATLITRLQQD 164
                 8***************************86 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.28
                 HHTT--TT CS
         SAP  14 kkrGLpts 21 
                 + +GLpts
  CDO69521.1 308 EDLGLPTS 315
                 579***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 3240.47
//
Query:       CDO69522.1  [L=174]
Description: hypothetical protein BN946_scf184785.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-31  108.6   0.0      3e-31  108.1   0.0    1.3  1  DUF2315   Apoptogenic protein 1


Domain annotation for each model (and alignments):
>> DUF2315  Apoptogenic protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   1.7e-35     3e-31       2     123 .]      31     164 ..      30     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1.7e-35
     DUF2315   2 dliGppdpvSnLrpiiyk.ipenetel................ekklrelrqetqewnqeFWakqNtrFskekeeflesllkekglekkeelsaeemse 83 
                 +l+GppdpvS Lrp+iy+   +   +                 e++++++rqe++++n++FW ++N rF ++k+++l+sl++ ++ e        ++s+
  CDO69522.1  31 HLVGPPDPVSHLRPVIYDdA-PPPPPPsvrhpyslreftgdtrEYQWKMQRQELDAFNHTFWLESNSRFYAAKDAVLQSLPEGTTPE----QREAALSA 124
                 89***************953.333332357899**********************************************99998833....46679*** PP

     DUF2315  84 FYkeFldknakkhlaYnaeWykrnlkilvlavrvklekll 123
                 FY ++++++ ++  aY+aeW+krn+++++l +rv++++++
  CDO69522.1 125 FYTRWVAQECTRLDAYDAEWRKRNWSTIILGARVRYQEFM 164
                 *************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1294.54
//
Query:       CDO69523.1  [L=1165]
Description: hypothetical protein BN946_scf184785.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-76  257.3   0.5    2.4e-75  254.4   0.5    1.9  1  Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-term
    5.7e-15   55.0   0.0    8.1e-15   54.5   0.0    1.1  1  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
       0.48   10.2   3.7        4.3    7.1   0.1    2.7  3  DUF445         Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.4   0.5   4.1e-79   2.4e-75       4     594 ..     542    1087 ..     540    1089 .. 0.88

  Alignments for each domain:
  == domain 1  score: 254.4 bits;  conditional E-value: 4.1e-79
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX......................XXXXXXXX.................... CS
  Nucleoporin_C    4 leqnleyrlssLeiLaeflksng..eslsrdtrwellwqAEkiaaatalWklqeeflaersekktllnsiieliklneeageeDaVRhwFihdv 95  
                     l  ++ +r + L++L++f+++n+  +++s++ r+ l+++AEk+ aa++lW +++++l++ ++++ l  ++ ++++   e  +eD  R + +  v
     CDO69523.1  542 LHAQMTSRKERLSFLIKFINDNSalTKMSQRSRQILASDAEKLYAAHQLWLRHNDALRAGHADEVLHGAVYRYMNEIGEGHHEDCLRAFLRLRV 635 
                     678999*****************999************************************999999999***667788899*********** PP

                     ...................XXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXX.......XXXX.......XXXXXXXXXXXXXXXXX CS
  Nucleoporin_C   96 drleiiiawaykvikdlksnsikealsflnvllEanevvlaaleeafefrkenaafygieeekledekwtstsvivenlerlldLtklllkdlf 189 
                       l  +++++ + ++  +s+  +++ +++    +an++vl +l++a+++r+ n++ ygi    l   +wts+  ++  +++l+ +t++++++  
     CDO69523.1  636 RDLGGLLPHVAELVRRSRSEMNDKSGQVI---PQANQIVLTILQSARNYREYNLGVYGIFLPML--DPWTSQPTVIDIVSELFTVTTQIVEA-- 722 
                     *****************999888666665...9**************************66666..5**********************998.. PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX.........XXXHHHHHHHHHHH CS
  Nucleoporin_C  190 apnlssiinrnisrgesieleatllqeicgslcsltdvllfraiErlrwakeqkdkklqnaikllekaydearkeqilkLlsigkleeaielae 283 
                      p+           g+s++  a++ q  + +l++l+  l+ r +   +  +e       +a +ll   +++ r+e +  L + g ++ea++lae
     CDO69523.1  723 -PS-----------GDSDS--ANSTQVPKSQLPELAACLF-RPVAAEQAGSE-------RARSLLDDRFNQLRPEVLEVLRRNGFANEAFKLAE 794 
                     .66...........55554..5566777889999886655.44444444444.......55556666666666666669*************** PP

                     HTSXHHHHHHHHHHHHH..HHHXSSSSXHHHH......HHHHHHHSSSXXHHHHHHHHHHHHHTTXGGGGGGX..XXTTHHHHHHHTXXHHHHH CS
  Nucleoporin_C  284 kledfralvellleianklasdkgederkelyekaeelekrielyfekfgkaFayalYdwlisqgqqekLLdlkedtsfilpFLrekpelakll 377 
                     +++dfr+l++l+ +                +  +++   +rie+y+ekf +aF ++lY+w+i++g  ++++ + ++++f+  F+ e+     ++
     CDO69523.1  795 DYHDFRSLASLCHKGKV-------------YPPEENPNAARIETYIEKFKEAFTTELYQWYIEHGELRTMFAQ-DHSPFLDHFFAEH-PHPGIS 873 
                     *************9774.............3333444589*********************************.*************.6788** PP

                     HTHHHHXXSHHHHHHHHHHHHSSSSXXXHHHHHHHHHHX---HHH................HGGGHHHHHHHHHHHHHHHH............. CS
  Nucleoporin_C  378 WiydvkekdfeeAAeiLysLalskeqlvlskrieLSlakLaqLaeleesekekkglekklekieellevaaiQddllalilpsiegaidekaev 471 
                     Wi+d+++ ++++A+++L++ a     ++ sk ++LS++kL +La l+e   +++  ++ l+ +++ l+++++ + l +  + ++++ + +++ +
     CDO69523.1  874 WIHDLGRGRYAQASQALLTEAEH-APELVSKHLMLSIGKLSHLAPLHEG--AQEVDQSVLDAFHDGLDFVSVHETLIDDLKTALAS-VRSRQSL 963 
                     ********************988.7888999**************6655..55556999*********************965555.4555556 PP

                     ..............H-TT..S-HHHHHHHHHHHHHS---HHHHHHHTT.........TTTT-HHHHHHHHHHT.T---HHH............H CS
  Nucleoporin_C  472 eLamekfgkk....lderpalrqllkdelkklLkhkildasdLidlltLidtkeeeedplgefelALkvlkvs.dlrneeeealekliWRRcvI 560 
                     e+ +e++++k    l +r+al+ ++k  +++lL++k+l+++d+ ++l L+d ++    + +++ +AL  l  + ++++ ++ ++ + iWRR++I
     CDO69523.1  964 EMQVETIAQKkagnLSNRKALQIVFKYLVRQLLQGKALSVEDMAEVLSLKDNHN----RVEDYTTALHLLARAeNVPSVRRLNVFRNIWRRIYI 1053
                     666666655555669*********************************999976....999**********9999******************* PP

                     HHHHHHHHHHHHHH-HHHHHHHTT-TTTS-HHHH CS
  Nucleoporin_C  561 rddWeelnetkkkedakvekklsstalvftlsel 594 
                     +ddW+ + +t  ++da++ ++l+stal++ l+++
     CDO69523.1 1054 HDDWNMIRQTTGVSDAELNQRLRSTALYAALQAV 1087
                     ******************************9987 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.4e-18   8.1e-15       6     365 ..      92     452 ..      87     466 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.4e-18
                    EEEEEE.E--HCHHHTTS--...SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS...EEEEEE----S---EEE....EEE---SSSS-SSSCE CS
  Nucleoporin_N   6 ykvskl.alPdelleelnht...esstkgglfpeigrawitvdnklflWnYnstasspstdtipydgeehtilavg....lLvkpkpgtfveevgl 93 
                     +v+++  lP e+ + l ++   ++  +g +++ +g a +++ + +f+W+Y+++ + ++t++i     + ++l+++    +Lv   p     e+gl
     CDO69523.1  92 MTVTFYaQLPVEVKQALRNAdfyRDAYTGDVDTLTGFAVVASLRTCFVWQYSQALTGTPTCYIFGCPRDLNPLPMAtpfhALVPFGPQR---EPGL 184
                    6899999***********997777******************************97777666666668888888886554444444444...9**9 PP

                    EEEECTTSEEEEECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTSSEEEEEEC-SSS-CEEEEEEEEE-SSSS-...- CS
  Nucleoporin_N  94 lLvvattgeivyweviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstgrlyeltyrdssgwpslkckkicltkgglsslls 189
                    +++ ++ g+i++w +i    +    +++s        +  ge+vt++i ++ +  ++ ++s grl++l +++s+g+++l++    ++++ ls l  
     CDO69523.1 185 IIC-SNIGQIRFWDSIGMGLA--GGDNFSFSL---LELGEGENVTNLIRADAQT-FITSTSAGRLFRLVVTSSGGKYHLSLHPFGRPQSALS-LSR 272
                    999.***************33..334433333...345788**********888.************************************9.449 PP

                    -SSS--G........----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTT.CGCTTT-EEEEEEES CS
  Nucleoporin_N 190 ilpgvls........gasereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqilleaitesliasa.plaskslkildispv 276
                    +lp+++s        g+ +  ++ +l+ +s+ ++ + +  + +i+ +++s  +g  +l  + d+ ++ + a  e+ + ++ ++++ +l++ld+++ 
     CDO69523.1 273 LLPSFWSegelvpqpGFVSAVAVEELARGST-GRNVWAMIDLRIQQWNMS-VEGWEKLLWEEDVGDQTRAAVREHFPHAPeSDVEMDLELLDLKLQ 366
                    9999999999988887777788888888887.55556667888999****.889999************999999999999*************** PP

                    -TTTSSCEEEEEEECSSSEEEEEEEEE.........EEECTTT-EEEEEEEEEEEEECCCCCSSSSS.SSBECC-CCSSETTCEEEEEEES--SEE CS
  Nucleoporin_N 277 saeessllhlvaitsngvrlylllsss.........ssdspsalslvsvrfppkrlntysskllenk.kksklllpskiispgiflfvvfdkssav 362
                    s++  + + lv+++ + ++ +  l+s           ++ p+a+++  v+  p     y s++ ++  + ++l + +    p  ++++ f+  +av
     CDO69523.1 367 SSD--DMVMLVSWAGQDDEPSPGLASTprrvyaivyLRHLPGAFTVTKVQAVP-----YQSTSSSGApMHPRLQVVT----PQKLVAIQFG--DAV 449
                    ***..899999999888888665555555777777778888888888888888.....4444444444467777777....8888888888..655 PP

                    EEE CS
  Nucleoporin_N 363 vlv 365
                     + 
     CDO69523.1 450 TIC 452
                    554 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1   0.00071       4.3     180     284 ..     521     641 ..     490     679 .. 0.75
   2 ?    2.2   1.1     0.022   1.3e+02     123     195 ..     923     995 ..     918    1093 .. 0.78
   3 ?   -1.6   0.0      0.31   1.8e+03      57     131 ..    1069    1152 ..    1059    1159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00071
      DUF445 180 lesivsmflreltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeea.lwealkdlllkdlneeesllreriskl 277
                  e++++ +l++  +i++  ++ +++ ++++e+     ++ +++nd+++ +k+ +  ++ l++ +++ y+ + lw + +d+l++  ++ e  l+  + + 
  CDO69523.1 521 AEQLSEAILESDPEIIRAHHDLHAQMTSRKERLS---FLIKFINDNSALTKMSQRSRQILASDAEKLYAAHqLWLRHNDALRAGHAD-E-VLHGAVYRY 614
                 6788888999977778777766677777777777...*******************************9999***********9999.8.9******** PP

      DUF445 278 leklge....................k 284
                 ++++ge                     
  CDO69523.1 615 MNEIGEghhedclraflrlrvrdlggL 641
                 ******444444444444444433332 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.022
      DUF445 123 epllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklvlesivsmflreltsil 195
                 +++++++l+++ +     ++ ++l+d +k  l++  +++ ++  ++  ++++ g+l++++  + +++ l++ l
  CDO69523.1 923 QEVDQSVLDAFHDGLDFVSVHETLIDDLKTALASVRSRQSLEMQVETIAQKKAGNLSNRKALQIVFKYLVRQL 995
                 678899999999999999999*******************************999997666666665544333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.31
      DUF445   57 eslakkLkeaevasklaewlk........nptnkeslaaiveellkeiledlddesikellkknlk..kkleevipepllgklle 131 
                   +l+++L+++ + ++l+++++        + t +++l    e++++  + +++ e+++++++++ +  + l+++++e++ ++l e
  CDO69523.1 1069 AELNQRLRSTALYAALQAVAHkpalpegyKLTPAQALDVPSEDEVALRWPSMSPEEVSAIVRDYQRdsRALQDLDLEGIYQSL-E 1152
                  57999999999999999999988888888788888888899999999999999999999999998876788888888888887.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.40
# Mc/sec: 8661.96
//
Query:       CDO69524.1  [L=431]
Description: hypothetical protein BN946_scf184785.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-37  129.8   2.4    2.4e-37  129.8   2.4    2.8  2  PRCC      Mitotic checkpoint regulator, MAD2B-interacting


Domain annotation for each model (and alignments):
>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7  11.8         1   1.8e+04       8      82 ..      12      90 ..       6     220 .. 0.64
   2 !  129.8   2.4   1.3e-41   2.4e-37       1     214 []     235     431 .]     235     431 .] 0.88

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 1
        PRCC  8 asassssaaaksaptisyeplvssap...eaeeseeedppetepepasqpeaenadleakkaakssea.mvpepteqdp 82
                ++as+++ ++++++t++ +pl s+ p   ++++++   p  ++++++ ++  + ++++ kka+k+ +   +  p+ +d 
  CDO69524.1 12 DNASDNEVTQQASSTTPGAPLSSKLPtpaKKSTFSLPPPSSSASSSKPSSGLSLPPPKPKKAPKKITIgLPSLPKDEDG 90
                5666777777777788888887777732234444443344444444444444555666665555544443333333333 PP

  == domain 2  score: 129.8 bits;  conditional E-value: 1.3e-41
        PRCC   1 dfFSlesasassssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea.mvpepteqdpvkensknypgyyllps 98 
                 dfFSl s+s+sss  ++++ p++s++p+++++                             +  +aa + e  ++pept++dp       ypgyyllp+
  CDO69524.1 235 DFFSLGSTSSSSSRVSTSPLPSMSSAPAIMDPL---------------------------ANVPSAAPKVEDfVPPEPTPNDP-------YPGYYLLPT 299
                 8****9999999999999999999999999998...........................122223344555789********.......********* PP

        PRCC  99 g.................sqqpqe..dasdlnlddealrqLlGrrgg........nrkreeikeakiieinedeelkaneqwlakalteekaekkgnpv 170
                 g                 +    +   a+ ++l++       G+ +g        ++++ +++e+++ ei+e+ee+ka ++ +++  +++k+++kg+++
  CDO69524.1 300 GqwaaydpayykqfydkwK----KeyEAHIRALEK-------GKIKGfeeaedapEFNAVKEMERAKKEIQEREERKALTTAASAVPAAPKMNIKGAAL 387
                 *******999988864331....236899999999.......6666677777889******************************************** PP

        PRCC 171 rgqakrKHQltyLahqAkeneeeLeeswAenrrnRkqaqaKYGF 214
                 +g+a+ +HQlt+L+++A++n+e+Lee++A++rrnRk+a++KYGF
  CDO69524.1 388 SGRARSRHQLTTLLSEAYQNREALEEKIAQGRRNRKEAGNKYGF 431
                 *******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3216.92
//
Query:       CDO69525.1  [L=141]
Description: hypothetical protein BN946_scf184785.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-22   79.3   2.7    3.9e-22   79.0   2.7    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    1.2e-05   25.4   0.0    1.2e-05   25.4   0.0    1.8  2  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0026   18.2   0.0     0.0049   17.3   0.0    1.4  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 
  ------ inclusion threshold ------
      0.019   14.6   0.0      0.024   14.3   0.0    1.1  1  Bt_P21         Bacillus thuringiensis P21 molecular chaperone
      0.035   14.1   0.2      0.044   13.8   0.2    1.2  1  YscO-like      YscO-like protein
      0.074   13.3   0.0       0.13   12.5   0.0    1.3  1  CENP-W         CENP-W protein


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   2.7   1.3e-25   3.9e-22      18     130 ..       4     115 ..       1     116 [. 0.86

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.3e-25
                 XXXXXXXXHT..TS-SSSSB--TTT-XTTHHH.HHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     Histone  18 ekkvsakker..kasskskkkkkrryrpgtva.lkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakh 113
                 +++ sa+k++  +a++ + k++k++++++t+   + ++k++k+ ++++ + ++++v++++++    d +is++a+ +l+++++++++++++eA++l+ +
  CDO69525.1   4 KPASSASKAPasTAQKAPVKAEKKTAAKSTSSgADGEKKKRKKVRKETWSSYVYKVLKQVHP----DTGISNKAMAILNSFVNDIFERIATEASKLSSY 98 
                 444555555566777777777777777776651678899999********************....********************************* PP

                 TTXSEEXHHHHHHHHHH CS
     Histone 114 aKRvTitpkDiqlArrl 130
                 +K++Ti +++iq+A+rl
  CDO69525.1  99 SKKSTISSREIQTAVRL 115
                 ****************7 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.6       4.5   1.3e+04      43      55 ..      16      28 ..      14      31 .. 0.63
   2 !   25.4   0.0   4.1e-09   1.2e-05       8      65 .]      56     113 ..      53     113 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
                   HHHHHHCCTTSSC CS
  CBFD_NFYB_HMF 43 eAaeickkekrKt 55
                    A++   k+++Kt
     CDO69525.1 16 TAQKAPVKAEKKT 28
                   5666666777777 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 4.1e-09
                    HHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   8 vkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    v k++k+  pd++ i++ A  +++ +v    e++a+eA+++ + +k+ ti+   i+ Av
     CDO69525.1  56 VYKVLKQVhPDTG-ISNKAMAILNSFVNDIFERIATEASKLSSYSKKSTISSREIQTAV 113
                    789*****88888.******************************************998 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.6e-06    0.0049       8      60 ..      59     111 ..      55     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
                  HHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHH CS
  TFIID_20kDa   8 LvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60 
                   ++qv ++t + ++   +L   ++d  e + + a+kl  + k +++++r iq 
   CDO69525.1  59 VLKQVHPDTGISNKAMAILNSFVNDIFERIATEASKLSSYSKKSTISSREIQT 111
                  689************************************************95 PP

>> Bt_P21  Bacillus thuringiensis P21 molecular chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.9e-06     0.024      81     135 ..      66     119 ..      44     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.9e-06
      Bt_P21  81 qtvlnnkgnssleeqvsdifdrcvymeveksssyiklleqdsnkvdlvvsllfiv 135
                 +t + nk  + l+  v dif+r    e+ k ssy k     s +++  v l++ +
  CDO69525.1  66 DTGISNKAMAILNSFVNDIFERI-ATEASKLSSYSKKSTISSREIQTAVRLILPG 119
                 47899*****************6.589********************99999765 PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   1.5e-05     0.044      19     112 ..      23     114 ..      12     134 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  19 eAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaKvaqlre.eldkGttsdkikkmkryikvvkeelkqeekkvekQkekVkvAerkvEqare 112
                 +AEk  ++k     ++ ek  k+++ r ++   +  Kv  l++ + d G + +++ +++++++ + e+++ e+ k+ +  +k ++ +r++  a +
  CDO69525.1  23 KAEKKTAAKSTSSGADGEKK-KRKKVRKETWSSYVYKV--LKQvHPDTGISNKAMAILNSFVNDIFERIATEASKLSSYSKKSTISSREIQTAVR 114
                 55555555555544444443.33444555555555555..4441458999999************************************998755 PP

>> CENP-W  CENP-W protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.13       9      83 ..      43     117 ..      37     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
      CENP-W   9 qrklikrkaprgflkrvlkrrkphlrleascdllvhlncllfirrlaeesrtnacenksgvikkdhvlaaakvil 83 
                 +rk++++ +  +++ +vlk+ +p  ++++++  ++      + +r+a e+   +  +k   i    + +a ++il
  CDO69525.1  43 KRKKVRKETWSSYVYKVLKQVHPDTGISNKAMAILNSFVNDIFERIATEASKLSSYSKKSTISSREIQTAVRLIL 117
                 89************************9988876666555567799999998888888888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1444  (0.0805399); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 992.83
//
Query:       CDO69526.1  [L=328]
Description: hypothetical protein BN946_scf184785.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00041   19.9   0.0    0.00072   19.1   0.0    1.4  1  MaoC_dehydratas  MaoC like domain
  ------ inclusion threshold ------
      0.054   13.9   0.0       0.14   12.6   0.0    1.7  1  Transglut_core   Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   8.1e-08   0.00072      19     102 ..     219     300 ..     198     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.1e-08
                      EHHHHHHHHHHHT---GGGT-HHHHHHT.TTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEEEEEE CS
  MaoC_dehydratas  19 teadialyalvsgDlnpiHvdpefAkka.gfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkvelevv 102
                      t+++  ++ +++++  +iH+d+++A+k+ g +++ +hG lt+ ++  +++ +++    + +++++ r ++p  ++  ++    ++
       CDO69526.1 219 TPTTLFRFSALTFNGHYIHLDKDYAQKSeGYPERLVHGPLTALMLLDVTALHAPG---TPFQSFEYRAVNPIVVNRPVRICGART 300
                      5888999****************7766538***********98888888877777...678888888888888887777655555 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05      0.14      16      72 ..      52     110 ..      42     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
  Transglut_core  16 ekakaiyewvrknveys..aprrtpgsrdaeavletgkGncedfaslfvallRalGipa 72 
                       + a+ +w++   e +  ++ r    +d+  +l t+ G++ +++s+++a  Ra+G+pa
      CDO69526.1  52 SSVSALDRWIHADKELTlhDTIRPEHLADLYITLPTRDGTAAGHSSCAAAGGRAAGLPA 110
                     66778888888555555424444444456888999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2432.90
//
Query:       CDO69527.1  [L=232]
Description: hypothetical protein BN946_scf184785.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1563.20
//
Query:       CDO69528.1  [L=397]
Description: hypothetical protein BN946_scf184785.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-34  119.7   0.0    2.1e-34  119.1   0.0    1.3  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   1.2e-38   2.1e-34       2     371 .]       9     378 ..       8     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 1.2e-38
                  EEBTTTS----HHHHHHHHHHHHCTCCSSSS..SSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC...-TTTSEEEE CS
  Aminotran_5   2 yldsaAttqkpqeVldalqeyytdynanvhr..svhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslars...lkpgdeivv 93 
                   ++ a+++ +p +Vl+++q+ + ++++ +    +++h++ke+++ + + ++++++ + ++ +++i+ft+G+++ ++++v+l+l+++   l+p d    
   CDO69528.1   9 INFGAGPSALPLSVLEEAQKGLLNFQGTGMGvaEISHRSKEFQTFLSDFEANIRTQLDVPPTHRILFTQGGGTaQFSAVVLNLLARyrlLRP-D---A 102
                  6899********************999887667*************************************9998*********877663333.3...4 PP

                  ETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE..GGGHHHH--TTEEEEEEESBETTTTE..B--HHH....HHHHHHH.TT-EEEEE-TTTTTT CS
  Aminotran_5  94 teaehhanlvpwqelakrtgakvkvipldeegeld..ldelekllnektklvaithvsnvtGt..iqpvee....igklakk.kgalvlvDaaqavgh 182
                    a+  a ++ + +   rt ++ +v+++d + + d  + ++e + + +++l++++ +++v G+   ++ ++      +l+ + k + +++D +++++ 
   CDO69528.1 103 APADTEARRLSAGATV-RTVVDARVYSKD-GRSFDniPPHAEFAFSADPALIYYCENETVDGVefSHDPQSpaafPFHLLPRdKLVPLVADYSSSFMC 198
                  5788888886666665.778888888875.555555778889999******************53222222111122344442678899********* PP

                  S---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHH CS
  Aminotran_5 183 ipidvkklgvDflafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyl.eeigleaiekh 279
                  +pi   +  + +++++++K++gP+G+++l+vr++ ++ +  +   g +     l ++t+a++ s ++  Tp v +i+  g++le + +++gl   e+ 
   CDO69528.1 199 RPIPHLADHA-VIYAGAQKNIGPAGLTILIVREDCIVDVDAAAKLGATPVPLILSYKTLADSGSLYN--TPSVLAIYMAGLVLERMkQNGGLPYYEEV 293
                  ***9777776.7***************************888888885555566*************..*****************9*********** PP

                  HHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEE..E-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 280 ekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrs..GhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  ++++a+++++++ + ++  ++  ++++ ++s ++++f+ +     +++Ld + +  +++  Gh+++          g++R+Sly++ teeevd+l
   CDO69528.1 294 NRRKAKKVYAAIHEGEQKGVFRRKVQQGSESWMNVVFEVLGEGAEKKFLDGAeKQGMKGlkGHRSV----------GGIRVSLYNAVTEEEVDKL 378
                  *************************************************988777777788*****..........*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2614.63
//
Query:       CDO69529.1  [L=837]
Description: hypothetical protein BN946_scf184785.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-44  150.8   6.2    2.8e-41  141.5   0.9    2.3  2  RabGAP-TBC  Rab-GTPase-TBC domain
      7e-10   38.6   0.0    5.9e-07   29.1   0.0    2.5  2  PH_RBD      Rab-binding domain (RBD)


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.4   1.3e-05      0.12       2      63 ..     485     559 ..     484     576 .. 0.75
   2 !  141.5   0.9   3.1e-45   2.8e-41      66     215 .]     594     744 ..     577     744 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
  RabGAP-TBC   2 elRgevWklllgyep............evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpes..es 63 
                 ++R+evW++llg+++            e kr++++e k++     +   +++ +++  ++I+ D+ rt +++  + 
  CDO69529.1 485 SIRKEVWPYLLGVHDwqgdatrrardwEAKRKQYRELKEQWWGVPEVFDRQDVIEE-RHRIDVDCRRTDRTQplFA 559
                 68***********99*********99966666666666666555666666666554.69*********99553333 PP

  == domain 2  score: 141.5 bits;  conditional E-value: 3.1e-45
  RabGAP-TBC  66 nkqgqnqLeriLkaysiynpevgYcqGmndivaplllvsl.deeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldl 163
                 +++  + L  iL++y++y +e+gY+qGm+d++ap ++v++ dee +Fwcf++ +  ++++ ++  +++g+k++l +l++l++  dp+ly+h+++ +  +
  CDO69529.1 594 TNEHIERLAGILLTYNFYEKELGYVQGMSDLCAPVYVVMGgDEEMTFWCFAKVM--DRMKPNFLRDQSGMKQQLLILQQLISVMDPELYRHFEKSDALN 690
                 6778899*****************************99999*************..**************************************9999* PP

  RabGAP-TBC 164 elfaikwfltlflrefpletvlrlwDlllege...kfvllrvalailklleeell 215
                  +f+++w+l  f+refp+e vlrlw++l++ +   +f +l+vala+l+++++ +l
  CDO69529.1 691 LFFCFRWILIAFKREFPFEEVLRLWEVLWTDYystQF-VLFVALAVLESHRDVIL 744
                 **************************99976678555.9************9886 PP

>> PH_RBD  Rab-binding domain (RBD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   6.5e-11   5.9e-07       1     147 [.      51     197 ..      51     209 .. 0.83
   2 !    6.9   0.0   0.00045         4     124     154 ..     218     247 ..     212     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 6.5e-11
      PH_RBD   1 rllfeKnnVflets.dqdslikGvislvekks...dvilkWiPnqlmkkkdqpssas.skseelfdpdyepdwavistvesddrskwaitvslkelksi 94 
                 rl+++K  V++++     + i G + lv+k+s     +l WiP+ l+++k + + ++  + ee   +d e + av   ++++  +++a++v l  + s+
  CDO69529.1  51 RLIYSKSKVYVNPTaYARDNIPGFVALVKKESaqpTYLLAWIPESLLNEKGPTEWDKfVRVEEHAVADDEDEDAVLIDLPVQRPESYAFSVPLTSIYSL 149
                 79**********99678899**********55222478*************988776256677778888899999999********************* PP

      PH_RBD  95 rkskpgless..ylilvtkdGvslpplhFeqGgtrallkalskylllalspldsr 147
                     p l+s    + +    G  lp lhF+  + r       ++ + a+sp dsr
  CDO69529.1 150 IVNPPSLSSWygSIAINLISGSTLPTLHFHDDESR-------SFTMPAKSPVDSR 197
                 ***99998753578888899***********9954.......5566666666666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00045
      PH_RBD 124 Ggtrallkalskylllalspldsrlllvvrl 154
                 Gg  +ll  l++y ++  s+l+s+l+lv + 
  CDO69529.1 218 GG-EDLLAKLRSYCHILRSSLQSNLYLVDPS 247
                 55.79**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 5165.74
//
Query:       CDO69530.1  [L=86]
Description: hypothetical protein BN946_scf184785.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-39  131.8   0.0      8e-39  131.6   0.0    1.0  1  Ribosomal_S21e  Ribosomal protein S21e
     0.0081   15.0   0.0     0.0081   15.0   0.0    1.0  1  DUF917          Protein of unknown function (DUF917)


Domain annotation for each model (and alignments):
>> Ribosomal_S21e  Ribosomal protein S21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   8.9e-43     8e-39       1      78 [.       1      78 [.       1      79 [. 0.99

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 8.9e-43
  Ribosomal_S21e  1 mqndagelVdlYiPrkcsatnrlItakDhasvqinvaevdetGratgesttyalsgairrkGesddslnrlakkdgll 78
                    m+nd+g lVdlY+Prkc+atnrlIt+kDhasvqi++++vd++Gra  +stt+alsg++r++Gesddslnrla+k+gll
      CDO69530.1  1 MENDQGILVDLYVPRKCAATNRLITSKDHASVQISIVDVDADGRALPTSTTFALSGQVRAMGESDDSLNRLATKAGLL 78
                    9***************************************************************************97 PP

>> DUF917  Protein of unknown function (DUF917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.1e-07    0.0081      90     135 ..      10      53 ..       1      74 [. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.1e-07
                 EEEE-SSSSCCHHHHHHHHHHHHT-EEESB-SSSS--SSGGGSHHH CS
      DUF917  90 davislEiGGlNglvallaaaklglpvvDaDgmGRAfPelqqttfa 135
                 d  ++  +++ N l++    a +++ +vD D  GRA+P+ +   fa
  CDO69530.1  10 DLYVPRKCAATNRLITSKDHASVQISIVDVDADGRALPTSTT--FA 53 
                 56677778888999999999999***************9754..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 645.51
//
Query:       CDO69531.1  [L=302]
Description: hypothetical protein BN946_scf184785.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-22   78.0   4.9    8.3e-22   77.4   4.9    1.4  1  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.21   11.5   0.0    1.3  1  DUF5510   Family of unknown function (DUF5510)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   4.9   9.2e-26   8.3e-22      41     132 ..     106     207 ..      52     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 9.2e-26
        PAP2  41 vstletses....keakesfPSgHsafafalalllalllrrkrkkig......lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayr 129
                 + +  t++     +++++sfPSgHs+ +fa++ +l+++l+ k + ++      + +lal +l  a+lva+sR  +++H+++Dvl+G ++G+++a+++yr
  CDO69531.1 106 TVAVCTQTAkhilRDGWRSFPSGHSSLSFAGLGFLSFYLAGKLHLFDtrghtaKAWLALTPLSGAALVAISRTMDYRHHWHDVLVGSILGVVTAYFSYR 204
                 33333333356778999********************************************************************************** PP

        PAP2 130 lvq 132
                 +++
  CDO69531.1 205 QYY 207
                 997 PP

>> DUF5510  Family of unknown function (DUF5510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.21      33      52 ..     188     207 ..     182     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
     DUF5510  33 iviGtilGlacayftykyii 52 
                 +++G+ilG+  ayf+y+   
  CDO69531.1 188 VLVGSILGVVTAYFSYRQYY 207
                 689*************8544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2250.33
//
Query:       CDO69532.1  [L=400]
Description: hypothetical protein BN946_scf184785.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-51  172.3   0.0    8.4e-51  171.6   0.0    1.3  1  PSDC            Phophatidylserine decarboxylase
    1.5e-36  125.8   0.0    2.1e-36  125.4   0.0    1.1  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> PSDC  Phophatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   9.3e-55   8.4e-51       1     139 [.      23     157 ..      23     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 9.3e-55
        PSDC   1 spvvqelkdliesdprlrmlfssmfeevpskkpykkdptgkkqirdyeellellnhilttapefsdkeeevglvgvPlnalLdwpmgtpsGyalFldpe 99 
                 +pv+  ++++ie+d++++m f++mfe+vp+k+pyk+dptgk+q+rdy+ +l+l+nh+++tap++    e+++lvg+P+na+Ldwpmgtp+G a+F++p+
  CDO69532.1  23 NPVIVGFQNFIENDATIYMGFHQMFEQVPTKPPYKDDPTGKPQVRDYKLMLRLFNHVISTAPAY----EDDDLVGFPINAILDWPMGTPAGLAMFTRPD 117
                 5899************************************************************....789**************************** PP

        PSDC 100 vNkalkkiLneWgkfLkspaSasvltteekgWfseealke 139
                 vN++++k+++ W++fL+s++S+ vl+++++gWf++ a ++
  CDO69532.1 118 VNEHFHKMFEVWAAFLSSEESTIVLNDSPSGWFGPPASEA 157
                 ***********************************99875 PP

>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   2.3e-40   2.1e-36       2     194 ..     180     390 ..     179     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 2.3e-40
  PS_Dcarbxylase   2 neffvrklkdgaRpi..dddpgaivsPaDgrilqi.geieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkv 93 
                       ff+r +++g+Rpi  +dd+  i s +++    i  +++ +  +++Kg++ysl+++l+ +++  a +f+ng++  + Ls ++yHr+haPv+g++
      CDO69532.1 180 DHFFTRLFREGVRPIpfSDDDRVINSACESAAYRIaYNVKATDSFWLKGQPYSLEHMLHFDED--APKFANGTVFQASLSATKYHRWHAPVNGRI 272
                     57*************54444555***********999***********************999..88**************************** PP

  PS_Dcarbxylase  94 eerrhipGellsvnpsalkelrglftln..........eRvvlvie.w...kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf.GStvv 173
                     +++ ++pG+++  +p++    ++    n           R ++ ie +    G +++++vG++ v++++++v+ g+e++kG++lG+F+f GSt +
      CDO69532.1 273 RRIVKVPGTYYAESPFEGFPDPDAAGPNlsqafitsiaARALIFIEaNnadIGLMCFMAVGMAEVSTCEVTVKVGEEIRKGDQLGMFHFgGSTHC 367
                     ************88888888866666666666666667********7578889****************************************** PP

  PS_Dcarbxylase 174 lvfeag..kfieslvekgqkvkm 194
                     l+f ++   ++ ++v+ + ++k 
      CDO69532.1 368 LIFRPEtkVKFAPEVTIEADIKL 390
                     ****9866444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2940.66
//
Query:       CDO69533.1  [L=311]
Description: hypothetical protein BN946_scf184785.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-27   95.1   0.2    1.3e-26   93.9   0.2    1.8  1  PPP4R2    PPP4R2


Domain annotation for each model (and alignments):
>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.2     7e-31   1.3e-26      22     132 ..      15     160 ..       4     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 7e-31
      PPP4R2  22 elLnevaktgdtlvlwsslkslfrekLenviehftetiPe.eeipalPNVeifn..................................leemkerllek 85 
                 ++L+++a t  +  +w  l++++++kL + i+ + ++ P+ e  p+l  V + +                                   eem++++ ++
  CDO69533.1  15 DILERIASTDLVETEWPLLRNIIKDKLDQNITSYLRDGPRwEGRPPLMIVQPQQlpngglklppfsprehdpnnpnppppkidldekeAEEMRTSIHSQ 113
                 789999999999999999999999999999999999999955555555555555999999999999999999999999999****************** PP

      PPP4R2  86 ldsfnaaPFTiqRicELltdPkkyYkeldKFvrAleKnilVvStiep 132
                 ld+ ++ PFTiqR+cEL++ P+ +Yk + K++rA+eK+ lV+S+++ 
  CDO69533.1 114 LDEIDGTPFTIQRLCELCVQPRQHYKYIGKYLRAVEKCLLVTSSWDA 160
                 *********************************************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2133.70
//
Query:       CDO69534.1  [L=225]
Description: hypothetical protein BN946_scf184785.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.7    8.3  12.4        2.6    7.7  12.4    1.2  1  SURF2       Surfeit locus protein 2 (SURF2)
        4.9    8.3   9.4        9.8    7.3   9.4    1.6  1  MRI         Modulator of retrovirus infection
        7.6    6.2   9.9         12    5.6   9.9    1.4  1  CCDC106     Coiled-coil domain-containing protein 106


Domain annotation for each model (and alignments):
>> SURF2  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  12.4   0.00044       2.6     108     219 ..      46     155 ..      36     170 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00044
       SURF2 108 e.eekkqgvegvpaellekskkkedqkkgrkkskkkkesfwepsssdeeasdsddsmsdlypdelFtekpvgkrededdkedfet.deeeeeakvsdee 204
                 + +  k+g  g  ++l++  + ++++k  ++++++ +++    ss d++ ++s+d   d   +e+Ft kp+ +++ + +   f+   ++++++k  +  
  CDO69534.1  46 KaQKRKEGLVGSRTQLEHVVEEATQDKPVERREENDDDASTHSSSADSAGEESSDGSGDEQSEEEFTDKPPLATKSSAH--HFDApPSKKQKGKAPERP 142
                 4367788999999999999999999999888884555555555556999999*******************99988544..344333333334444433 PP

       SURF2 205 keemeveksklqkrk 219
                 +++ ++  ++lqk++
  CDO69534.1 143 EDKPSL--RELQKKA 155
                 444444..3333332 PP

>> MRI  Modulator of retrovirus infection
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.4    0.0016       9.8      18      93 ..      64     144 ..      59     169 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
         MRI  18 LiEarkqekpleqlalagadkpelspacsesp.ssssgsrse.eedsgkdapapgl.spsqgpag..sdsacsrspeedeD 93 
                 ++E+ +q+kp+e++     d   +s ++ ++  +ss+gs  e  e++ +d+p+    s++++  +  s++++ ++pe+ eD
  CDO69534.1  64 VVEEATQDKPVERREENDDDASTHSSSADSAGeESSDGSGDEqSEEEFTDKPPLATkSSAHHFDAppSKKQKGKAPERPED 144
                 6899************99999988887555540555544333134444555555440444444441144445566677666 PP

>> CCDC106  Coiled-coil domain-containing protein 106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.9    0.0019        12      10     133 ..      35     163 ..      25     175 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
     CCDC106  10 qLevkkEkiswl.qkriedLeeeRdFLRcqlekfissksle..aeaekeskskksekkaeksesessssseesddsssdssessessegsst..ekkkk 103
                  ++v+k k +w  qkr e L + R  L   +e++++ k +e  +e+++++ +++s ++++ +es   s +e+s+++ +d    +++s+++ +     kk
  CDO69534.1  35 WVKVQKIKSKWKaQKRKEGLVGSRTQLEHVVEEATQDKPVErrEENDDDASTHSSSADSAGEESSDGSGDEQSEEEFTDKPPLATKSSAHHFdaPPSKK 133
                 467778888885489999999999888888888887666553334444444444555555555555555555555555543333333333321123444 PP

     CCDC106 104 kkkkkekkkkkktkkrerkrvkdvddvliR 133
                 +k k+ ++   k+  re ++    + +l+ 
  CDO69534.1 134 QKGKAPERPEDKPSLRELQKKAYSKSSLHN 163
                 554566677777777777766666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1407.05
//
Query:       CDO69535.1  [L=113]
Description: hypothetical protein BN946_scf184785.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-28   98.7   0.4    2.7e-28   98.3   0.4    1.2  1  SUI1      Translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.4   1.5e-32   2.7e-28       1      77 []      28     104 ..      28     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 1.5e-32
        SUI1   1 akpkihirleqrggrKkvTtvsgleafgidlkklakelkkkfacsgsvvkdg..geeiqvQGdqrkkvaelLtekygvp 77 
                 ++++ihir++qr+grK++Tt +gl ++++dlkkl+k++kk+fac+g+ v+d+  g++iq+QGdqr k+ ++L+++ g+p
  CDO69535.1  28 QQNYIHIRIQQRNGRKTLTTLQGL-PKEYDLKKLLKAFKKEFACNGTLVDDEeaGQVIQLQGDQRLKISNFLVQE-GIP 104
                 5789********************.***********************9977445********************.997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 765.07
//
Query:       CDO69536.1  [L=146]
Description: hypothetical protein BN946_scf184785.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-31  108.1   2.5    6.1e-31  106.3   1.8    2.0  2  SNRNP27   U4/U6.U5 small nuclear ribonucleoproteins


Domain annotation for each model (and alignments):
>> SNRNP27  U4/U6.U5 small nuclear ribonucleoproteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.059   1.1e+03      44      52 ..      25      33 ..      21      33 .. 0.88
   2 !  106.3   1.8   3.4e-35   6.1e-31       1      56 []      90     145 ..      90     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.059
     SNRNP27 44 NRkgGFNRp 52
                N  gG NRp
  CDO69536.1 25 NATGGANRP 33
                889*****8 PP

  == domain 2  score: 106.3 bits;  conditional E-value: 3.4e-35
     SNRNP27   1 eeeeemmklmGfggFdtTkgkkvegnnegavkkkkkrkyRQYMNRkgGFNRpLdki 56 
                 +ee++mm++mG++gF+tTkgk+vegn+ega+++kk r++RQYMNR+gGFNRpLdki
  CDO69536.1  90 DEEAAMMAMMGLTGFGTTKGKHVEGNQEGAANIKKMRTWRQYMNRRGGFNRPLDKI 145
                 69****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1089.90
//
Query:       CDO69537.1  [L=505]
Description: hypothetical protein BN946_scf184785.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-132  440.4   0.0   5.2e-132  440.2   0.0    1.0  1  GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding d
    1.8e-32  111.9   0.0      3e-32  111.1   0.0    1.4  1  GSH_synthase   Eukaryotic glutathione synthase


Domain annotation for each model (and alignments):
>> GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.2   0.0  5.7e-136  5.2e-132       2     375 .]      16     503 ..      15     503 .. 0.95

  Alignments for each domain:
  == domain 1  score: 440.2 bits;  conditional E-value: 5.7e-136
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
  GSH_synth_ATP   2 eqleelveeakdwalahGllvrkaekkekkessesathapvtLlPspfprklfeeAvevqkayneLyakvasdeefLeevlee...vikvDeFtak 94 
                    eq ++l+  a+++al+hGl++ ++  + ++  ++sa+hap++L+Pspfpr++fe A+ +q++yn Lya++a de+fL++v++    v +vDeFt++
     CDO69537.1  16 EQRSALTLLATTYALSHGLVYLPPV-DVQPPVPASAIHAPLALFPSPFPRNQFELAKGLQRKYNVLYARIAMDEAFLDNVMGAekgVGRVDEFTGH 110
                    678889999************7555.5666889************************************************88788********** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP  95 LweiyekvkkeglvqklslglfRsDYllheeeekeelslkqvEfNtisssfgglsskvselhryllkkekkkk..sllksnelpenealeelaegl 188
                    Lw+++++++++g++q+ +lglfRsDYllh+++e++ l+lkqvEfNtisssfg+ls++v+ lhr+ll+++++ +   +l+ ++lp n+++++laegl
     CDO69537.1 111 LWRLWKRLREQGISQSRHLGLFRSDYLLHTANEDAPLELKQVEFNTISSSFGALSQNVAGLHRHLLATTEYFNtsPILRVENLPPNDTISGLAEGL 206
                    *******************************************************************887777777778888************** PP

                    xxxxxxxxx....................................................................................... RF
  GSH_synth_ATP 189 akAhkaysk....................................................................................... 197
                    a+Ah+ay++                                                                                       
     CDO69537.1 207 AAAHRAYGSpsawilfvvqdgernvfdqrwleyellekhsirvirqtfeqlavsaeviptsrilrlrlpgllprgaesieistvyfragytpkdyp 302
                    *******888999*********************************************************************************** PP

                    ...................xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 198 ...................PsiatqLagtKkvqqvLakpgvLerf..leekeeveklretFaglysLdkdesegkeavklaleepekyVLKPqrEG 272
                                       Psi++qLag KkvqqvL++ +vL++f    ++++++ + ++++g++ Ld+    g+e+v++a ++p++ VLKPqrEG
     CDO69537.1 303 tsghyetryllessiaikcPSIQLQLAGGKKVQQVLTNTEVLSHFtsGWSSSDLDPILNSWMGMWGLDEG---GEEGVRRARAQPQNLVLKPQREG 395
                    *********************************************65367889**************543...89********************* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 273 GGnNiYgedipefLkklkeeersaYILMeliepp.avknvlvraege...vekeevisELGiygtilfkke.evlvneeaGyllRtKasssdegGV 363
                    GGnN+Y++dip+fL+ l++ er+a+I Meli++p    n+lvra+g    ++k+evisELGi+g++lf +    ++++e+G+llRtK+++s+egG+
     CDO69537.1 396 GGNNVYKSDIPAFLDALPKVEREAWIAMELIRTPeGLGNYLVRAGGGtagAVKTEVISELGIFGWALFGGPdGAIEEKEVGWLLRTKGKDSNEGGI 491
                    ********************************9999*******998888899***************998758999******************** PP

                    xxxxxxxxxxxx RF
  GSH_synth_ATP 364 aaGfgvlDsplL 375
                    aaGf+vlDs++L
     CDO69537.1 492 AAGFSVLDSVVL 503
                    **********98 PP

>> GSH_synthase  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   3.3e-36     3e-32       2     103 .]     219     329 ..     218     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 3.3e-36
                   EEEEEE-TT-TTHHHHHHHHHHHHHCC.-EEEEE-HHHHHHHEEE...TT-EEEETTT.........EEEEEEEECS-SSGGG--SHHHHHHHHHHH CS
  GSH_synthase   2 ivlfvvqenernvfDqrlleyellekh.ikvirvtleelkeetkleekekkkllldkk.........kevsvvYfRagYapkdypseeeweaRlllE 88 
                    +lfvvq++ernvfDqr+leyellekh i+vir t+e+l+ ++++   +++ l l+ +          e+s+vYfRagY+pkdyp++ ++e+R+llE
    CDO69537.1 219 WILFVVQDGERNVFDQRWLEYELLEKHsIRVIRQTFEQLAVSAEV-IPTSRILRLRLPgllprgaesIEISTVYFRAGYTPKDYPTSGHYETRYLLE 314
                   69*****************************************88.45778888888899************************************* PP

                   HSSSEEET-HHHHHH CS
  GSH_synthase  89 rssaikcPsiayqLa 103
                   +s aikcPsi+ qLa
    CDO69537.1 315 SSIAIKCPSIQLQLA 329
                   *************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3721.01
//
Query:       CDO69538.1  [L=225]
Description: hypothetical protein BN946_scf184785.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-35  120.7  17.6    7.9e-35  120.4  17.6    1.0  1  Bac_rhodopsin  Bacteriorhodopsin-like protein


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4  17.6   4.4e-39   7.9e-35      51     215 ..       1     168 [.       1     175 [. 0.97

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 4.4e-39
                    HHTTTTEEEEEETTEE...EEEETHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin  51 malglGltgveaefeh...rqvfyarYidWllttPllvlvlaelagadrrtllvlvladvvmivgglvgaliestyrwvyftisvaallvvlylll 143
                    ma+ lG t v++ef     rq+f +rYi+W++t Pll+l l + +g + +++++ +++ +v +++glv+al++sty+w+y+t++vaal ++ y+ll
     CDO69538.1   1 MASDLGATPVPVEFRGdgtRQIFFVRYIQWFITFPLLLLELLLATGLSLSDIFTTLFMGIVLVITGLVAALVHSTYKWGYYTFGVAALFYIWYVLL 96 
                    9*************99999***************************************************************************** PP

                    THHHHHHTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Bac_rhodopsin 144 gelaraakslsserrslfntLrnlvvvlwilYpvawllgeeGngiqpdveavvygilDlvtkvgfglillaa 215
                      + + + +++ + rs +++      +l+ilYp+aw+  e+Gn+i++++e + ygilD+++  +f ++ l+ 
     CDO69538.1  97 WHAPHTTFAAGGALRSGYLMAAGYLSFLLILYPIAWACAEGGNVITVTSEMIWYGILDILAGPVFLFFFLWE 168
                    99999999999999***********************************************99999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1543.98
//
Query:       CDO69539.1  [L=413]
Description: hypothetical protein BN946_scf184785.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-44  151.5   0.1    5.6e-44  149.8   0.0    1.9  2  AAA              ATPase family associated with various cellul
    1.4e-09   37.8   0.2    9.4e-09   35.1   0.0    2.3  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    1.2e-08   35.0   0.1    4.9e-08   33.1   0.1    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    5.6e-08   33.1   0.2      3e-07   30.7   0.0    2.1  2  AAA_2            AAA domain (Cdc48 subfamily)
      6e-08   33.3   0.8    2.8e-05   24.5   0.0    3.1  3  AAA_16           AAA ATPase domain
    1.3e-06   27.8   0.1    3.1e-06   26.6   0.0    1.6  1  DUF815           Protein of unknown function (DUF815)
    1.3e-05   25.7   0.0     0.0012   19.4   0.0    2.9  2  AAA_18           AAA domain
    0.00012   22.0   0.9     0.0092   15.9   0.0    3.4  4  NTPase_1         NTPase
     0.0003   21.1   0.2     0.0011   19.3   0.0    2.0  2  AAA_28           AAA domain
    0.00037   20.5   0.0     0.0016   18.4   0.0    2.0  2  AAA_14           AAA domain
    0.00045   20.0   0.0     0.0014   18.4   0.0    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00059   19.8   0.0      0.014   15.4   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00061   19.5   0.0     0.0015   18.3   0.0    1.7  1  AAA_lid_3        AAA+ lid domain
    0.00082   19.7   5.2      0.012   15.8   0.1    3.1  2  AAA_22           AAA domain
      0.002   18.5   0.0     0.0059   17.0   0.0    1.8  1  RNA_helicase     RNA helicase
      0.002   17.4   0.0     0.0044   16.3   0.0    1.5  1  TIP49            TIP49 P-loop domain
      0.003   17.3   0.3     0.0082   15.9   0.3    1.8  1  AAA_30           AAA domain
     0.0032   17.0   0.1      0.021   14.3   0.1    2.1  1  AAA_7            P-loop containing dynein motor region
     0.0035   17.5   0.0      0.016   15.3   0.0    2.1  2  AAA_33           AAA domain
     0.0076   16.0   0.2      0.022   14.5   0.0    1.9  2  IstB_IS21        IstB-like ATP binding protein
      0.008   15.6   0.1      0.019   14.3   0.1    1.6  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0092   15.4   0.0       0.58    9.5   0.0    2.5  2  TniB             Bacterial TniB protein
     0.0096   15.9   0.1      0.078   12.9   0.0    2.2  2  NACHT            NACHT domain
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.026   14.4   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
      0.011   15.3   0.4      0.054   13.1   0.1    1.9  2  AAA_25           AAA domain
      0.023   14.5   0.2       0.09   12.5   0.0    2.0  2  AAA_11           AAA domain
      0.023   14.4   0.5      0.055   13.2   0.1    1.9  1  AAA_24           AAA domain
       0.04   14.2   0.1       0.13   12.6   0.1    1.8  1  AAA_19           AAA domain
      0.064   12.1   0.0       0.11   11.3   0.0    1.4  1  AFG1_ATPase      AFG1-like ATPase
      0.067   13.0   0.0       0.16   11.8   0.0    1.7  1  Bac_DnaA         Bacterial dnaA  protein
      0.076   12.1   0.0       0.17   10.9   0.0    1.6  1  T2SSE            Type II/IV secretion system protein
      0.089   12.5   0.2        1.1    9.0   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
      0.097   12.6   1.4       0.65    9.9   0.0    2.7  3  ATPase_2         ATPase domain predominantly from Archaea
       0.12   12.9   0.4       0.62   10.6   0.0    2.5  2  ABC_tran         ABC transporter
       0.15   11.2   0.0       0.27   10.3   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.15   11.6   0.1       0.37   10.4   0.0    1.7  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
        0.2   11.0   1.9       0.46    9.8   0.0    2.4  3  ATPase           KaiC
        5.3    7.5   0.0        5.3    7.5   0.0    2.4  1  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       5.6   2.6e+03      31      54 ..      48      71 ..       2     129 .. 0.61
   2 !  149.8   0.0   1.2e-46   5.6e-44       1     132 []     197     330 ..     197     330 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.6
                TTTCSSSSTTHHHHHHHHHHHHHH CS
         AAA 31 gsellskyvgesekkirelfkeak 54
                + e+ ++y+++ +++++  + +a+
  CDO69539.1 48 MLEIQESYIKDEQANLKRELIRAQ 71
                334444444444444444333333 PP

  == domain 2  score: 149.8 bits;  conditional E-value: 1.2e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vllyGppGtGKT+l+kava+++ ++f+++ gse+++ky+ge+++ +r++f+ a+e+a p i+fiDEida+a++r   ++++++e +r++ +Ll+++dg+
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA-PAIIFIDEIDAIATKRfdaQTGADREVQRILLELLNQMDGF 294
                 79******************************************************9.****************99888899999************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++  s+v vi+atnr d+ldpallr gR+drkie++l
  CDO69539.1 295 DQG-SNVKVIMATNRADTLDPALLRpGRLDRKIEFPL 330
                 **5.77****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     2e-11   9.4e-09       1      57 []      84     139 ..      84     139 .. 0.96
   2 ?   -0.7   0.0       3.1   1.5e+03      27      41 ..     307     321 ..     301     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2e-11
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     +++  E +d  +  iV ++++ ++vv++ + ++re L+p+ +Va+++++++ +++LP
      CDO69539.1  84 IGQFLEPIDQ-NTGIVGSTTGSNYVVRILSTLDRELLKPSSSVALHRHSNALVDVLP 139
                     6788899999.999******************************************9 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.1
                     EE-GGGSSST--TTE CS
  Prot_ATP_ID_OB  27 slagavpremLrpgD 41 
                     ++a+ ++++ Lrpg 
      CDO69539.1 307 NRADTLDPALLRPGR 321
                     57899********96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1     1e-10   4.9e-08       1     136 [.     196     318 ..     196     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1e-10
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL GppGtgK++l++ +a+ +++++  v ++++ ++    g+r +           + r ar   ++i+++DE++ + ++ +++      e ++ l 
  CDO69539.1 196 GVLLYGPPGTGKTMLVKAVAHHTTASFIRVVGSEFVQKYLGEGPRMV---------RDVFRLARenAPAIIFIDEIDAIATKRFDAQTGADREVQRILL 285
                 59*******************************98888888888887.........667777776789*******************988777777777 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                 e+ ++++     + +++ vi+++n++d     l+pal++
  CDO69539.1 286 ELLNQMDGFD--QGSNVKVIMATNRAD----TLDPALLR 318
                 7776665543..2355***********....88888875 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       2.7   1.3e+03      21      62 ..      27      73 ..      12      84 .. 0.58
   2 !   30.7   0.0   6.4e-10     3e-07       6     105 ..     197     290 ..     192     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.7
                HHHHHHTT-......-EEEEEGGG---...----THHHHHHHHHTTT CS
       AAA_2 21 kalaellfv..kkekkliradaselle...eeevehlvsrligappg 62
                ++l++  ++  k +k    +++ e++e   ++e ++l  +li a++ 
  CDO69539.1 27 QELEQEEDLylKYKKLARHLEMLEIQEsyiKDEQANLKRELIRAQEE 73
                33333333333445556667777777766556655555555555554 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 6.4e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqi 102
                 +ll gp g+Gkt+l ka+a +  +    ++ir+  se+ +    + l +     ++    a e+   i+++DEid i+ k+   +     +Vqr+LL +
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTA----SFIRVVGSEFVQ----KYLGEGPRMVRDVFRLARENApaIIFIDEIDAIATKRFDAQTGADREVQRILLEL 287
                 6899*****************995....************....88888888899998888888889************966666666689*******9 PP

                 HH- CS
       AAA_2 103 leg 105
                 l +
  CDO69539.1 288 LNQ 290
                 975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       4.4   2.1e+03      41     106 ..      84     139 ..      81     167 .. 0.66
   2 !   24.5   0.0     6e-08   2.8e-05      15      56 ..     185     223 ..     181     236 .. 0.77
   3 ?    5.3   0.1     0.049        23     126     159 ..     245     288 ..     237     303 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4.4
      AAA_16  41 vrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 + ++l+++ ++ gi+ +++   +        ++++l   +l r+ll +++s +l +++ +l ++l 
  CDO69539.1  84 IGQFLEPIDQNTGIVGSTTGSNY--------VVRIL-S-TLDRELLKPSSSVALHRHSNALVDVLP 139
                 56788888888777766666666........45555.3.455555556555566666666666655 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 6e-08
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekdggifl 56 
                 +++++  + p+ vll+G++G+GK+ lv++++++ +++   f+
  CDO69539.1 185 LYKKIGIDPPRGVLLYGPPGTGKTMLVKAVAHHTTAS---FI 223
                 66667777789********************988877...33 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.049
      AAA_16 126 llallsrderplvlvlDdlq...........wadeaslqllaaLl 159
                  ++l+++   p ++++D+++            ad + + +l +Ll
  CDO69539.1 245 VFRLARE-NAPAIIFIDEIDaiatkrfdaqtGADREVQRILLELL 288
                 4577777.778*********8888866666656666666633333 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   6.5e-09   3.1e-06      23     116 ..     155     262 ..     141     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.5e-09
      DUF815  23 devklddLvgidkqkealventeqfleg.........lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erpe 107
                   v+ +d+ g+d+qk+++ e +e  l++          p + vLL+G  GtGK  lvka+ ++++++ +r++  e  ++ l e p++v+ +    +++ 
  CDO69539.1 155 PDVTYQDIGGMDTQKQEIREAVELPLTHfdlykkigiDPPRGVLLYGPPGTGKTMLVKAVAHHTTASFIRVVgsEFVQKYLGEGPRMVRDVFrlaRENA 253
                 568889999999999999998764433311111112257889******************************77788999******9987642227778 PP

      DUF815 108 rfilfvDDL 116
                   i+f+D +
  CDO69539.1 254 PAIIFIDEI 262
                 89****975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.29   1.4e+02      11      80 ..      22      85 ..       5     109 .. 0.70
   2 !   19.4   0.0   2.6e-06    0.0012       1      85 [.     197     310 ..     197     408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.29
      AAA_18 11 KttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvid 80
                Kt+l +eL++++ +  +++++a++ ++l+ ++ +     k ++ +   +l++a ee    + +  +lvi 
  CDO69539.1 22 KTQLLQELEQEEDLYLKYKKLARHLEMLEIQESY----IKDEQANLKRELIRAQEEVK--RIQSVPLVIG 85
                7888888877767788888888888888888887....22222333333444444332..3444555555 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.6e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf....................gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss.a 70 
                 +ll G+pG+GKt l k+++ ++ ++                    ++ +  +a+en + + + +e        +d +  +d++++  ll++l++ +  +
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTtASfirvvgsefvqkylgegprmVRDVFRLARENAPAIIFIDEidaiatkRFDAQTGADREVQRILLELLNQMDGfD 295
                 799***************999865589999999999999999999888888888888888888888888999888889999999999999999998876 PP

      AAA_18  71 leegknlvidghlae 85 
                 ++++  +++   +a+
  CDO69539.1 296 QGSNVKVIMATNRAD 310
                 666666666555554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       7.3   3.4e+03     125     149 ..      11      34 ..       1      53 [. 0.52
   2 ?    1.2   0.0      0.67   3.1e+02      87     119 ..     147     177 ..     104     183 .. 0.66
   3 !   15.9   0.0     2e-05    0.0092       2      92 ..     197     291 ..     196     303 .. 0.75
   4 ?    0.7   0.0       0.9   4.2e+02      65      97 ..     378     410 ..     363     412 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.3
                 TSEEEEE--SS--SHHHHHHHT-TT CS
    NTPase_1 125 ekpvlavihrrkdlalveeirerkd 149
                 e+p   ++ +  + +l++e+++++d
  CDO69539.1  11 EEPTFETVIED-KTQLLQELEQEED 34 
                 33333333333.3345555554444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.67
                 HHHHHHHHHH-EEEE---STTGGG-HHHHHHHH CS
    NTPase_1  87 ealrkalseadviviDEiGkmElkskkfkeave 119
                 ++l k  +++dv   D iG m  + ++++eave
  CDO69539.1 147 AMLGK-EEKPDVTYQD-IGGMDTQKQEIREAVE 177
                 34443.4778887766.9999999999999997 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 2e-05
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEE.EEEEE-------EEEEEET.T--EEEEEETT---SSEETTEEE-HHH...HHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGf.yteevreggrrigFkivdlasgeegiLarveakreprvgkyvvdves...feelalealrka 92 
                 v++ GppG+GKt lvk v++    s ++v G   ++++  +g r+  ++  la ++   +   ++   +  +++  ++ +   ++++ le l+++
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTASFIRVVGSeFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEIDAIATKRFDAQTGAdreVQRILLELLNQM 291
                 6788*************************9974689999*************9998888877775555555555554432223666666666655 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.9
                 ---SSEETTEEE-HHHHHHHHHHHHHHHHHHH- CS
    NTPase_1  65 akreprvgkyvvdvesfeelalealrkalsead 97 
                 + + +r  +yvv   +fee   +++++a+++ d
  CDO69539.1 378 GLQAVRKNRYVVLPADFEESWKQNVKRADETLD 410
                 55678999*************999999987765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       9.1   4.3e+03      12      25 ..      22      40 ..      18      78 .. 0.48
   2 !   19.3   0.0   2.3e-06    0.0011       2      39 ..     197     239 ..     196     282 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9.1
      AAA_28 12 KTtlleaLaar.....gyp 25
                KT ll++L+++     +y+
  CDO69539.1 22 KTQLLQELEQEedlylKYK 40
                5666666664433333222 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.3e-06
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileekl 39 
                 + + G+++tGKT l++a a +     ++vv  E++ ++l e+ 
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHttasFIRVVgSEFVQKYLGEGP 239
                 6799***************986666677777888888876654 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       5.2   2.5e+03      21      59 ..      28      59 ..      17     108 .. 0.43
   2 !   18.4   0.0   3.5e-06    0.0016       5     106 ..     197     304 ..     194     313 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 5.2
      AAA_14 21 qlikellvkkesilyinldderdkkladpekllelilek 59
                +l +e+       ly++ ++     +   e  +++i+++
  CDO69539.1 28 ELEQEED------LYLKYKKLARHLEM-LEIQESYIKDE 59
                3333332......34333332221111.11112222222 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.5e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad.pekllelileklkeekktylflDEiqev............pewekalkslvdeg 90 
                 +++ G+  +GKT+l+k ++++      s++ +   +  +k l + p ++ + ++++++e+   ++f+DEi  +            +e++++l +l++  
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTT---ASFIRVVGSEFVQKYLGEgP-RMVRDVFRLARENAPAIIFIDEIDAIatkrfdaqtgadREVQRILLELLN-- 289
                 7899***************8888...77777766665554444314.4555555555556899**********999999995555555555555544.. PP

      AAA_14  91 knldvivtGSnsklls 106
                  ++d +  GSn k+++
  CDO69539.1 290 -QMDGFDQGSNVKVIM 304
                 .457777777777665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.1e-06    0.0014      35      97 ..     196     266 ..     170     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.1e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvleka.gd...laalltnl...eekdvlfideihrls 97 
                  vllyGpPG Gkt l k +a+   ++ +++  +  ++k  g+   ++  + +l   ++  ++fidei  ++
  CDO69539.1 196 GVLLYGPPGTGKTMLVKAVAHHTTASfIRVVGSEFVQKYlGEgprMVRDVFRLareNAPAIIFIDEIDAIA 266
                 59******************999887256666666766322211133333333111445689999997765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.62   2.9e+02      65      73 ..     177     187 ..     165     193 .. 0.75
   2 !   15.4   0.0   2.9e-05     0.014      22      79 ..     197     253 ..     187     270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.62
                 S..EEEEE-TT CS
        TsaE  65 g..lyHfDlYR 73 
                 +  l HfDlY+
  CDO69539.1 177 ElpLTHFDLYK 187
                 15699*****7 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.9e-05
                 EEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE..SSEEEEE-TT-SSTHH CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYelekeglyHfDlYRledeee 79 
                 +lL+G+ G+GKT+lv+++a++   +  +        v++Y  e    +  D++Rl++e+ 
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTASfiR--VVGSEFVQKYLGEGP-RMVRDVFRLARENA 253
                 89*******************9998554..444466899966444.45579999976554 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.1e-06    0.0015       1      44 [.     352     395 ..     352     396 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.1e-06
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvdl++ ++r e  S A++ ++++ A+l A+r ++  +  +dfe
  CDO69539.1 352 DVDLEDYVSRPEKLSSAEITSIVQGAGLQAVRKNRYVVLPADFE 395
                 9*******************************998766666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.6e-05     0.012       8      29 ..     197     218 ..     192     231 .. 0.85
   2 ?    5.4   0.2     0.045        21      77     127 ..     240     304 ..     218     312 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++GtGKT+l++ +++  
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHT 218
                 689**************99876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.045
      AAA_22  77 ellealeqalraravielliiDEaqhlr..s........eealeeLrsllnl.....srkgvqliL 127
                 ++++ + + +r+ a  +++ iDE++ +   +         e+ + L +lln      + ++v++i+
  CDO69539.1 240 RMVRDVFRLARENAP-AIIFIDEIDAIAtkRfdaqtgadREVQRILLELLNQmdgfdQGSNVKVIM 304
                 455555666666666.9*********9876144556776444444455555444466777777765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-05    0.0059       1      68 [.     197     255 ..     197     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.3e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenps 68 
                   ++lyGp+g+GK++l+k +          +++   ++r + ++f+++Y g+   ++ D+ +   e+ p 
    CDO69539.1 197 VLLYGPPGTGKTMLVKAV---------AHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPA 255
                   689**************3.........34445566799999999999999999999998888775454 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.2e-06    0.0044       6      89 ..     144     231 ..     141     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.2e-06
                 XXXXXXXXXXXXXXXXXX.XXXXXXX.XXXXXXXXXX...XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   6 shikgLGldedgeaekee.eglvGqk.kareaagviv...elikekkla.GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 s i+ LG +e+ ++++++ +g+  qk + rea+ + +   +l k+  +   r+vLl Gp+gtGkt l  a++++ +    f+ ++gse+ 
  CDO69539.1 144 SSIAMLGKEEKPDVTYQDiGGMDTQKqEIREAVELPLthfDLYKKIGIDpPRGVLLYGPPGTGKTMLVKAVAHHTT--ASFIRVVGSEFV 231
                 7788888888877776652578777625799998754111444444443369********************9876..789999999975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   1.7e-05    0.0082      21      51 ..     197     227 ..     185     312 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrvig 51 
                 ++l Gp+GtGKt+++ka++++ +a+  rv+g
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTASFIRVVG 227
                 6899*****************9999888876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   4.4e-05     0.021      34     120 ..     195     273 ..     185     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.4e-05
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDDlnmpakekygaq 120
                 + vll+Gp GtGKt+++k + ++           +f     ++ +q+ + +     r     +  +   ++F+D+++  a  +++aq
  CDO69539.1 195 RGVLLYGPPGTGKTMLVKAVAHHTT--------ASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEIDAIATKRFDAQ 273
                 579***************9887776........444445555556666655555555444455555666666666666666665555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-05     0.016       2      36 ..     197     233 ..     197     291 .. 0.79
   2 ?   -1.6   0.0       5.9   2.8e+03      98     121 ..     384     407 ..     365     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.5e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrr 36 
                 vll G+pG+GK+ l++ ++ +++  ++++   ++ ++
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTasFIRVVGSEFVQK 233
                 7899**************9888877666665555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.9
      AAA_33  98 pvrivvvetdeetlkeRlakRaan 121
                 + r vv+ +d e+  +++ kRa++
  CDO69539.1 384 KNRYVVLPADFEESWKQNVKRADE 407
                 358899999999999999999986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       6.3     3e+03      79     111 ..      35      67 ..      24      74 .. 0.74
   2 !   14.5   0.0   4.6e-05     0.022      48      78 ..     195     225 ..     180     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.3
   IstB_IS21  79 lfvrvedLveelkrarrdgklaralkrllkvdl 111
                 l+++ ++L ++l++ + ++++ +  ++ lk +l
  CDO69539.1  35 LYLKYKKLARHLEMLEIQESYIKDEQANLKREL 67 
                 577778888888888888887777766666655 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.6e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsv 78 
                  +++l Gp+G+GK+ l  a+++++ ++ ++v
  CDO69539.1 195 RGVLLYGPPGTGKTMLVKAVAHHTTASFIRV 225
                 6799*****************9987766665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1     4e-05     0.019      25      43 ..     197     215 ..     189     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtml k+++
    CDO69539.1 197 VLLYGPPGTGKTMLVKAVA 215
                   89************99875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0012      0.58      31      58 ..     190     217 ..     176     225 .. 0.81
   2 ?    3.0   0.0      0.12        57     107     140 ..     241     274 ..     232     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
        TniB  31 krkrmpnlllvGdsnnGKtmivekFarl 58 
                   + ++ +ll+G++ +GKtm+v+  a++
  CDO69539.1 190 GIDPPRGVLLYGPPGTGKTMLVKAVAHH 217
                 55567899**************987655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
        TniB 107 leqqvlrllrelkvrvLiiDEihnllagsarkqr 140
                 + ++v rl re  + ++ iDEi+ + + + ++q 
  CDO69539.1 241 MVRDVFRLARENAPAIIFIDEIDAIATKRFDAQT 274
                 557789999999************9988877774 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00017     0.078       3      23 ..     197     217 ..     195     223 .. 0.88
   2 ?    0.1   0.0       1.4   6.6e+02      75     115 ..     248     290 ..     228     310 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00017
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l G++G GKT+L++ +a+ 
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHH 217
                 899*************99875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.4
                 HHCCSCCCEEEEEE-STT-SS-TCH............HHHHHCT CS
       NACHT  75 vllelperlLlilDglDelvtdlgq...kekqpvrtlLselirk 115
                 +  e++  + + +D +D ++t+         ++v++ L el+++
  CDO69539.1 248 LARENA-PAIIFIDEIDAIATKRFDaqtGADREVQRILLELLNQ 290
                 333333.4445578888888754335555566777777788765 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.5e-05     0.026       2      30 ..     197     225 ..     196     232 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.5e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG++kt+lvka+a++  ++f r+
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTASFIRV 225
                 7999**********************998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00011     0.054      36      58 ..     197     219 ..     194     234 .. 0.88
   2 ?   -1.5   0.0       3.4   1.6e+03     130     163 ..     242     274 ..     229     293 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_25  36 allaGapgtGKttlaldlalava 58 
                 +ll+G+pgtGKt+l+  +a++++
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTT 219
                 69*************99999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.4
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensns 163
                 v+++ + ++e + ++ + iD ++++     ++++
  CDO69539.1 242 VRDVFRLARE-NAPAIIFIDEIDAIATKRFDAQT 274
                 5667788888.66999999999887665333333 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       2.2   1.1e+03     142     172 ..      42      72 ..       5     104 .. 0.46
   2 ?   12.5   0.0   0.00019      0.09      19      42 ..     196     219 ..     166     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.2
      AAA_11 142 afeeeeekeklkkskekskskleqerrklkk 172
                      e  e+++   ++++++l++e+   ++
  CDO69539.1  42 LARHLEMLEIQESYIKDEQANLKRELIRAQE 72 
                 1111111122222222222222222222222 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00019
      AAA_11  19 itliqGPPGtgKTktivellsqll 42 
                  +l+ GPPGtgKT  + ++ ++ +
  CDO69539.1 196 GVLLYGPPGTGKTMLVKAVAHHTT 219
                 4799*********88888877764 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   0.00012     0.055       5      22 ..     197     214 ..     194     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g+GKT+l+k  
  CDO69539.1 197 VLLYGPPGTGKTMLVKAV 214
                 79************9987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00027      0.13      12      35 ..     196     219 ..     191     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00027
      AAA_19  12 vllvtaGpGtGKTrvlkhivallv 35 
                  +l+ ++pGtGKT ++k++ ++  
  CDO69539.1 196 GVLLYGPPGTGKTMLVKAVAHHTT 219
                 5899***********999988865 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.11      56      81 ..     188     213 ..     151     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
  AFG1_ATPase  56 rksvepvrglYlwGgvGrGKtylmdl 81 
                  +    p+rg+ l+G+ G GKt+l+  
   CDO69539.1 188 KIGIDPPRGVLLYGPPGTGKTMLVKA 213
                  34678******************975 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.16      37     112 ..     197     268 ..     191     311 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-.SEEEEE-GGGGTT- CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkv.DvLliDDiqflagk 112
                 +++yg+ G Gkt L+ka+++++++++   rv    + eF+++ +        + f+    ++  ++ iD+i  +a+k
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHTTASF--IRV---VGSEFVQKYLGEGPRMVRDVFRLARENApAIIFIDEIDAIATK 268
                 79******************988765..333...3555666665555554455555444333134456666666555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00036      0.17      77     160 ..     131     225 ..     106     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
       T2SSE  77 gvrlrvvllPvvagealviRkksakeltlddlgaeealkekiaevlrkavre....rgl........ilvsGgTgsGKttllyallkeinksderi 160
                 +  l  vl+P +    + + k+++ ++t++d+g + ++k++i+e+++ ++++    +          +l+ G+ g+GKt l+ a+ +   +s  r+
  CDO69539.1 131 SNALVDVLPPEADSSIAMLGKEEKPDVTYQDIGGMDTQKQEIREAVELPLTHfdlyK-KigidpprgVLLYGPPGTGKTMLVKAVAHHTTASFIRV 225
                 4445556677777777777799*****************888888888765322221.112222222899************99988777665555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0023       1.1      23      46 ..     195     218 ..     168     235 .. 0.82
   2 ?    0.0   0.1       1.3     6e+02      96     143 ..     256     308 ..     248     313 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0023
                      S-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheas 46 
                        vl+ G  GtGK++l +a+ +++
       CDO69539.1 195 RGVLLYGPPGTGKTMLVKAVAHHT 218
                      679*************99986544 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.3
                      EEEEETGGGS-HH...HHHHHHHHHHHSEEESBTSSS..EEE--EEEEEEESS CS
  Sigma54_activat  96 tlfLDeigelple...lQekLlrvlqegevervGssk..eikvdvriiaatne 143
                      ++f+Dei  + ++   +Q+   r +q+  +e + + +   +  +v++i+atn+
       CDO69539.1 256 IIFIDEIDAIATKrfdAQTGADREVQRILLELLNQMDgfDQGSNVKVIMATNR 308
                      56666666654321113433333333333333333321134567777777775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       2.2     1e+03      82     123 ..      42      84 ..      12     138 .. 0.56
   2 ?    9.9   0.0    0.0014      0.65      21      44 ..     195     218 ..     184     237 .. 0.80
   3 ?   -0.5   0.0         2   9.4e+02     116     137 ..     251     279 ..     240     308 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.2
    ATPase_2  82 lgiavpkaeleeilk.eksklvfkaielllekikkkgkkiiii 123
                 l+  ++  e++e +  ++++++++ + ++ e++k+ +  + +i
  CDO69539.1  42 LARHLEMLEIQESYIkDEQANLKRELIRAQEEVKRIQSVPLVI 84 
                 2333333344333323555555555555555555554444443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0014
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienl 44 
                 + +++YGp g GKt L+k ++   
  CDO69539.1 195 RGVLLYGPPGTGKTMLVKAVAHHT 218
                 55799*************998766 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2
    ATPase_2 116 kgkkiiiiiDelqklidlgln.......g 137
                 +    ii+iDe+  +    ++       +
  CDO69539.1 251 ENAPAIIFIDEIDAIATKRFDaqtgadrE 279
                 33336777788777764444444443333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       4.2     2e+03      50      74 ..      43      67 ..       8     134 .. 0.61
   2 ?   10.6   0.0    0.0013      0.62      12      36 ..     195     219 ..     188     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 4.2
                GGB-HHHCCHCEEEE-SS.--S-TTS CS
                xxxxxxxxxxxxxxxxxx.xxxxxxx RF
    ABC_tran 50 keqeleslrkeigvlpqe.pqlfpel 74
                 +  le l+ + ++++ e ++l++el
  CDO69539.1 43 AR-HLEMLEIQESYIKDEqANLKREL 67
                22.33444444444444333444443 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0013
                 SEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllk 36 
                 + v + G+ G+GK+ L+k++a++++
  CDO69539.1 195 RGVLLYGPPGTGKTMLVKAVAHHTT 219
                 568899*************999875 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00057      0.27     117     138 ..     197     218 ..     192     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ tGkt+l +a a+ +
  CDO69539.1 197 VLLYGPPGTGKTMLVKAVAHHT 218
                 89****************9976 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00079      0.37       4      37 ..     198     231 ..     196     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00079
                 EEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   4 vltGflGsGKTtLlnhllenraglklavivNefg 37 
                 +l G++G+GKT+L++++ +++    + v+  ef 
  CDO69539.1 198 LLYGPPGTGKTMLVKAVAHHTTASFIRVVGSEFV 231
                 688***************9999999999988876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       3.1   1.5e+03      83     114 ..      46      73 ..       2      98 .. 0.45
   2 ?    9.8   0.0   0.00097      0.46       8      37 ..     183     212 ..     176     221 .. 0.84
   3 ?   -1.4   0.0       2.5   1.2e+03     118     151 ..     252     291 ..     239     298 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.1
      ATPase  83 laiidasesaeesaeekdkedleelieelaea 114
                 l ++++ es ++    +++++l+  + + +e 
  CDO69539.1  46 LEMLEIQESYIK----DEQANLKRELIRAQEE 73 
                 222222222222....2233333333333333 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00097
      ATPase   8 lDeilkgGipegrvvlitGepGtGKtifal 37 
                 +D   k Gi   r vl++G pGtGKt++++
  CDO69539.1 183 FDLYKKIGIDPPRGVLLYGPPGTGKTMLVK 212
                 55555678888999*************976 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.5
      ATPase 118 ikakrvviDsitglayeekeav......aReilrqlvrvl 151
                      + iD i+++a++  +a+      + +il +l++++
  CDO69539.1 252 NAPAIIFIDEIDAIATKRFDAQtgadreVQRILLELLNQM 291
                 5556677888888744333222111011444555555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.011       5.3      10      40 ..     186     215 ..     177     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.011
      AAA_23  10 frdqeidFskgltlItGpNGaGKTTildAik 40 
                 +++  id  +g+ l++Gp G+GKT ++ A+ 
  CDO69539.1 186 YKKIGIDPPRGV-LLYGPPGTGKTMLVKAVA 215
                 555556666666.9*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 2653.73
//
Query:       CDO69540.1  [L=298]
Description: hypothetical protein BN946_scf184785.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-38  131.5   3.3    1.2e-38  131.5   3.3    1.8  2  P5CR_dimer     Pyrroline-5-carboxylate reductase dimerisation
     0.0019   18.7   0.0     0.0074   16.9   0.0    2.0  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.5   4.5e+03      33      51 ..     107     125 ..      97     147 .. 0.64
   2 !  131.5   3.3   1.3e-42   1.2e-38       1     103 []     188     292 ..     188     292 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.5
                 T--HHHHHHHHHHHHHHHH CS
  P5CR_dimer  33 GlsreeArelaaqtvaGaa 51 
                 G++ + A +l++  +aG  
  CDO69540.1 107 GMKDALAGKLLISILAGVT 125
                 5555556666655555543 PP

  == domain 2  score: 131.5 bits;  conditional E-value: 1.3e-42
                 CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS..HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHH CS
  P5CR_dimer   1 EkqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese..paelrdkvtspgGtTiaglkeleegglraavieaveaaa 97 
                 Ek++da+talsGsgpA+ ++++ea+ad+gv++Gl+r+eA+elaaqt++Gaa++ l+ +  pa+l+d+vt+pgG+Tiagl ++e+g++r+++++a++ a+
  CDO69540.1 188 EKHFDACTALSGSGPAFACIFLEAMADGGVMMGLPRAEALELAAQTLQGAARMTLQAGthPAQLKDAVTTPGGCTIAGLLAMEDGRVRSTIARAIQVAT 286
                 89***************************************************8855568*************************************** PP

                 HHHHHH CS
  P5CR_dimer  98 krskel 103
                 +r++el
  CDO69540.1 287 ERASEL 292
                 ***997 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.2e-07    0.0074      27      97 .]      48     123 ..      35     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.2e-07
                    CEEEEEESSCCCHHHHHHHHC........-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC.GHHHHTTSEEEEESSS CS
  F420_oxidored  27 eivvansrnpekaeelaeelg........vkvtavdneeaaeeadvvvlavkpedveevlsel.akdalkgklvisvlag 97 
                     ++ a+ + +e+a++l + +         v++   +n +aa+e++vv+l   ++ ++ +lse  +kdal+gkl+is+lag
     CDO69540.1  48 RFI-ACVSREESAKKLGAVFFnagslgrsVEIVCANNVQAARESNVVIL---WQIASTILSEPgMKDALAGKLLISILAG 123
                    555.7777777777776655567788899777778*************9...9999999999889*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2069.00
//
Query:       CDO69541.1  [L=191]
Description: hypothetical protein BN946_scf184785.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-27   95.5   0.0    3.9e-27   95.3   0.0    1.0  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   2.2e-31   3.9e-27       2     154 ..      11     167 ..      10     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 2.2e-31
                      EEEEE-SSSHHHHHCCCTSHHHHHHHH.HHHHCHHHCCT-EEC---STT-TTTT........CEEEEEESSSSHHHHHHHH-EEEECS-CHHHH CS
  Glyco_tran_28_C   2 ilVtGGSqgaeaLnelvlselkllelk.srelqvlhqtGkreleevkikveelt........lkvevfefidkmaeaikaadLvIsRAGagtia 86 
                       +Vt+GS+ ++aL++ +ls  +l  l+ ++   +  q+G++ +++  ++++  +        l+v+v +f++++++++++adLv+s+AG gti 
       CDO69541.1  11 AFVTVGSTRFDALVHKALSPPFLDVLRaNGYRSLDVQCGNSAFDPSAFDHPAPDhwhrshngLDVNVWRFKPSLKDDYERADLVVSHAGSGTII 104
                      59************************9756678899********999996666667777789******************************** PP

                      HHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSC CS
  Glyco_tran_28_C  87 EllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekska 154
                      ++l+lgkplI+vp+p+    + dn+++el++a+a+l+++ + +   +L +a+++    kl ++++ + 
       CDO69541.1 105 DVLRLGKPLIVVPNPT----LLDNHQEELSDALAGLGHLRSST-VADLPQAIENFDPSKLVPFPQFDG 167
                      ****************....**********************9.*********999999888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1364.90
//
Query:       CDO69542.1  [L=292]
Description: hypothetical protein BN946_scf184785.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2102.47
//
Query:       CDO69543.1  [L=199]
Description: hypothetical protein BN946_scf184785.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-22   78.9   0.0    5.3e-22   77.6   0.0    1.7  2  NAC       NAC domain
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.043   13.6   0.0    1.5  1  UBA_4     UBA-like domain
        5.1    6.4  11.6        9.8    5.5  11.6    1.4  1  SelP_N    Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   8.8e-26   5.3e-22       1      57 []      47     103 ..      47     103 .. 0.98
   2 ?   -2.5   0.0      0.91   5.4e+03      29      42 ..     164     177 ..     161     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 8.8e-26
         NAC   1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaeek 57 
                 e+K+rkal  lglk++pgi++Vt+r++++ ++v++nP+V+ksp+s++y+vfGea+++
  CDO69543.1  47 ERKARKALISLGLKKVPGITRVTLRRPKNILFVIANPDVYKSPNSDCYIVFGEAKVE 103
                 89****************************************************985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.91
         NAC  29 gkvlvfdnPkVqks 42 
                 + +lv++++   ++
  CDO69543.1 164 DIELVIQQVGCSRA 177
                 47888888766655 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.2e-06     0.043      12      33 ..     173     194 ..     169     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.2e-06
       UBA_4  12 GadeekArqlLeannWdLerAi 33 
                 G++++kA++ L+ +++dL +Ai
  CDO69543.1 173 GCSRAKAVRVLKESGGDLINAI 194
                 9********************8 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  11.6    0.0016       9.8     186     223 ..       9      48 ..       2      56 .. 0.41

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0016
      SelP_N 186 hahshkqg..hkhhekhghhHkekeelsesqqeepeeeek 223
                 + hs++    h+h+++h+h+H e+ + +   ++ ++++e+
  CDO69543.1   9 EVHSDHSEheHEHEHEHDHDHDEDPTSQAALDKIQSRSER 48 
                 3344444400444444444444433333333332333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1428.59
//
Query:       CDO69544.1  [L=189]
Description: hypothetical protein BN946_scf184785.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-51  172.6   2.9    4.8e-28   97.9   1.3    2.0  2  DUF1264   Protein of unknown function (DUF1264)


Domain annotation for each model (and alignments):
>> DUF1264  Protein of unknown function (DUF1264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   1.3   2.7e-32   4.8e-28       1      63 [.       4      66 ..       4      67 .. 0.98
   2 !   75.8   0.0   1.7e-25     3e-21      83     169 ..      67     158 ..      65     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.7e-32
     DUF1264  1 fkpvkkikahlnafhvyaddpkrqveahhycshlnedlrQcliydsdekdarLigvEYiisek 63
                fkp+++i++hl+afhvy++d++r+veahhyc+hl+ +++Qc+iydsd++da+Lig+EYi+se+
  CDO69544.1  4 FKPINSIHQHLCAFHVYSHDRSRHVEAHHYCKHLSGEFHQCVIYDSDKPDAKLIGIEYIVSER 66
                79***********************************************************98 PP

  == domain 2  score: 75.8 bits;  conditional E-value: 1.7e-25
     DUF1264  83 vksGllvlpakagvpeaaee....aeleevvklYGKtyhlWqvdrgdklPlGapqLmmsftedgqvkl.klvkerderlgvdteekrekRkd 169
                 v+sGll l +k+ vp aa +     ++ e+ k+YGKt+h+W +d + +lPlG+p+Lm+s+t+dgq  + ++v++rde+ g dt++k+e Rk 
  CDO69544.1  67 VESGLLQLATKSLVPGAAADaaeqPAMLELQKTYGKTIHTWAIDISPELPLGPPNLMVSYTADGQGPPeEMVRKRDEEWGQDTATKKELRKG 158
                 89*******99999988777666699*************************************999988********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1395.30
//
Query:       CDO69545.1  [L=402]
Description: hypothetical protein BN946_scf184785.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-32  113.3   0.0    1.8e-32  112.9   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.8e-13   50.1   0.0    2.4e-13   49.7   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase
     0.0014   18.2   0.0      0.013   15.0   0.0    2.0  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.047   14.3   1.2      0.081   13.5   1.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
       0.17   11.4   0.0       0.25   10.9   0.0    1.2  1  DUF2974        Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0     5e-36   1.8e-32       2     210 ..     145     380 ..     144     381 .. 0.80

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 5e-36
                    EEE--STTTS--TTTT...HHHHHHHHHHHTS..EEEEEE---TTT......S-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldth...dalcrelakelga..vvvsvdYrlAPe......hpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaa 86 
                    +++HGG+f lgs++ +    ++ r l ++++   ++++vdYrlA        +p+Paa+ d++aa+r+l+ +   +g +p++i+++GdSaGGnla 
     CDO69545.1 145 LHLHGGAFHLGSARPDstaANITRGLLAHSEKldRALAVDYRLAATspnpfmNPYPAALLDCIAAYRYLVVE---AGFEPKNIIIVGDSAGGNLAF 237
                    89**********954444588888776666543479********6422244489****************99...69******************* PP

                    HHHHHHHHTT---...EEEEEEESE-SST...SSTTSHHHHHCHHTTTSSSS....C..HHHHHHHHHHHSS....GGGGGSTTTSGGGC..S-.. CS
  Abhydrolase_3  87 avalrardegepk...vagqvliyPvtdl...ertesesikkaeeladgpll....t..raaldlfwrlylp....eadrddplasplla..ed.. 162
                    a+++ + +++ p+   + g++ ++ ++dl   + + ++s+  a ++a + ++    t  +++  ++ r+yl+    e+ r++p++sp  a  ++  
     CDO69545.1 238 ALVRHFVENNIPGlapPGGLLSLSSWLDLsfsHVSAESSY--A-RNAPTDIFplgnTpeAQRESYANRAYLGlldrEEARTNPYISPASAhiKSte 330
                    ********97666888999999*******66444444444..2.2233333322442434444467799995556899999*******99653368 PP

                    ..SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 163 ..lsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgfa 210
                      ++g+p+t++  ++ + + d+++  aerl+a gv+v++  ++++vH+f+
     CDO69545.1 331 glFKGFPRTFISAGGAEKILDDSKVAAERLQADGVNVTIDIVPDAVHDFM 380
                    99***********************************************8 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   6.7e-17   2.4e-13     124     258 ..     143     287 ..     120     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 6.7e-17
  Say1_Mug180 124 vllylHGGgfalklipvtlvfLsnlrklfpdm....ailvsDYtvtaakdq..skkYplqvleslavydylvkskgf..knvvvlGdSaGGnlvLsll 213
                    l+lHGG f l+  +      + +r l+ +       l +DY + a+ ++   + Yp  +l+++a y ylv   gf  kn++++GdSaGGnl   l+
   CDO69545.1 143 TFLHLHGGAFHLGSARPDSTAANITRGLLAHSekldRALAVDYRLAATSPNpfMNPYPAALLDCIAAYRYLVVEAGFepKNIIIVGDSAGGNLAFALV 240
                  689*********98776555555555555432234667999***999987733689********************9778****************** PP

  Say1_Mug180 214 lklsklnkv..vlPkkaiaiSPWlnltildekekeylkasdklDvlc 258
                   +  + n +    P +   +S Wl+l + + +   ++  +   D   
   CDO69545.1 241 RHFVENNIPglAPPGGLLSLSSWLDLSFSHVSAESSYARNAPTDIFP 287
                  **88877652145788999********99988877777787777665 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.5e-06     0.013      47      82 ..     205     240 ..     201     244 .. 0.92
   2 ?    0.7   0.0     0.087   3.1e+02     165     189 ..     356     380 ..     349     402 .] 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.5e-06
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHH CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaal 82 
                   D+iaa ++l+ e   ++++++i G S+GG l+ a++
    CDO69545.1 205 DCIAAYRYLVVEAGFEPKNIIIVGDSAGGNLAFALV 240
                   9*****************************998876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.087
                   HHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 165 lvaaLqkkgknvlllifpdegHgvg 189
                    +++Lq  g+nv + i pd+ H + 
    CDO69545.1 356 AAERLQADGVNVTIDIVPDAVHDFM 380
                   5789******************443 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.2   2.3e-05     0.081       2     208 ..     145     379 ..     144     392 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
                    EEE--GC..........G.CHHHH.HHHHCCT.....CEEEEE--TTSTS-GGCS..--HHH.CHHHHHHHCCTT............TTSEEEEEE CS
  Abhydrolase_6   2 lllHGagss.....assW.lvapL.aallaag.....vhvlapDlpGhGrsdppp..ldled.ladlaalldelaa..........gggpvvlvGH 72 
                    l lHG+ ++     +     +a++ + lla+         la+D++    ++p p    +++ l+d+ a      a           ++++++vG 
     CDO69545.1 145 LHLHGGAFHlgsarP--DsTAANItRGLLAHSekldrA--LAVDYRLAA-TSPNPfmNPYPAaLLDCIA------AyrylvveagfEPKNIIIVGD 229
                    678887755443211..122445544444444555334..899998553.2222222222222333322......2222333555589******** PP

                    TCHHHHHHHHHHCC...EE..EEES-...----TTTS----TTHHHHHH...TT-CCCCHCCH........S-HSCCCCHHH.CCCCHCHCCCGHH CS
  Abhydrolase_6  73 SlGGalalaaapla.lvvg..vlldppp.talpagllaaalelllalla...llrllawlsre........plprlfladed.adaawrarlarla 152
                    S GG la a++++          l+pp+ +    ++l+  ++++ a  +   +++++ ++ ++        +++r +l+ +d ++a+ +++ ++++
     CDO69545.1 230 SAGGNLAFALVRHFvE--NniPGLAPPGgLLSLSSWLDLSFSHVSAESSyarNAPTDIFPLGNtpeaqresYANRAYLGLLDrEEARTNPYISPAS 323
                    *********8888842..134777775542233333444444444444422233335555333443334454444444444433466666666666 PP

                    HHCCHHC....HTTCCHHTT-TTGCEEECTT-CHHHHCHHCCCHSTTEEET.CE...SSS.- CS
  Abhydrolase_6 153 allaglg....llpaaawadlpvpllvlggeDplvprllerllaqagarlp.vvlpgaGH.l 208
                    a  ++ +     +p++ + +  +   +   +D  v+  +erl a +g+ +  +++p+a H +
     CDO69545.1 324 AHIKSTEglfkGFPRTFISAGGAEK-I--LDDSKVA--AERLQA-DGVNVTiDIVPDAVHdF 379
                    6666444111222333333333333.3..4566777..778888.55555558999888852 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     7e-05      0.25      69     100 ..     207     238 ..     195     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
     DUF2974  69 esAlkYlnkileesegkiylgGhSkGGnlAvy 100
                 ++A++Yl   +   +++i+++G S GGnlA+ 
  CDO69545.1 207 IAAYRYLVVEAGFEPKNIIIVGDSAGGNLAFA 238
                 689*****999999****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3079.02
//
Query:       CDO69546.1  [L=345]
Description: hypothetical protein BN946_scf184785.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-32  110.8   0.0    1.2e-31  110.2   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
    3.7e-11   42.5   0.0    5.2e-11   42.0   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase
    5.8e-05   22.1   0.0    8.9e-05   21.5   0.0    1.2  1  COesterase     Carboxylesterase family
     0.0028   17.2   0.0       0.57    9.6   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   2.8e-35   1.2e-31       1     210 [.      89     323 ..      89     324 .. 0.79

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 2.8e-35
                    EEEE--STTTS--TTTT...HHHHHHHHHHHTS..EEEEEE---T......TTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth...dalcrelakelga..vvvsvdYrlA......PehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnla 85 
                    ++++HGG+f++gs+  +    ++ r l++++    +v+svdYrl+      P +pfPaa+ d++aa+++l+ +    g dp++i++aGdSaG+n+a
     CDO69546.1  89 VMHIHGGAFYVGSAHPDeetANIPRGLVSHSMSveRVLSVDYRLSathpdpPANPFPAALLDSIAAYQYLVVE---VGFDPQNIAVAGDSAGANIA 181
                    689**********97665678999999988765237********75666668999****************98...8******************* PP

                    HHHHHHHHHTT---...EEEEEEESE-SST..SSTTSHHHHHCHHTTTSSSSC..HHHHH.HHHHHHS.S...GGGGGSTTTSGGGC...S-...S CS
  Abhydrolase_3  86 aavalrardegepk...vagqvliyPvtdl..ertesesikkaeeladgpllt..raald.lfwrlyl.p...eadrddplasplla...ed...l 163
                     a+++ + +++ p+   +  ++ ++ ++dl  +r++ +s     +++++ + t    ++d + + +yl p   e+  ++ ++sp      ++   +
     CDO69546.1 182 FALVRHLVENSIPGlppPGRLIGFSVWLDLsiSRSTLDSSVVR-NAKSDIFGTdpETRFDaYGTPAYLgPldpEQAKTNRYLSPASPyikPTeglF 276
                    ****999999644466577777777799998855555555333.344556655234555534457899536555666677777764443222578* PP

                    ST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 164 sglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgfa 210
                    +g+p+t++  ++ ++l d++  +aerl+a gv+v++  ++++vH+f+
     CDO69546.1 277 RGFPRTFISAGGAEILLDDSMVTAERLKADGVDVTVDIVPDAVHDFL 323
                    *********************************************97 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.2e-14   5.2e-11     117     266 ..      82     240 ..      54     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.2e-14
  Say1_Mug180 117 fdPkvDpvllylHGGgfalklipvtlvfLsnlrklfp.dm...ailvsDYtvtaakdq..skkYplqvleslavydylvkskgf..knvvvlGdSaGG 206
                   +P+ +++++++HGG f ++         +  r l + +m    +l +DY + a++++  ++ +p  +l+s+a y+ylv   gf  +n+ v GdSaG 
   CDO69546.1  82 AKPG-EKIVMHIHGGAFYVGSAHPDEETANIPRGLVShSMsveRVLSVDYRLSATHPDppANPFPAALLDSIAAYQYLVVEVGFdpQNIAVAGDSAGA 178
                  3333.59**********998877666666655666666674457899****999987633789********************9667*********** PP

  Say1_Mug180 207 nlvLslllklsklnkvvl..PkkaiaiSPWlnltildekekeylkasdklDvlclkglelfg 266
                  n+   l+ +l +   + l  P + i  S Wl+l i  ++   ++  + k D   ++  ++f+
   CDO69546.1 179 NIAFALVRHLVENSIPGLppPGRLIGFSVWLDLSISRSTLDSSVVRNAKSDIFGTDPETRFD 240
                  *********999776666225799*********98877766666669999999888888886 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     2e-08   8.9e-05     100     203 ..      81     185 ..      70     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2e-08
                 STTSSEEEEEEE--STTTS-BGCG.....S-THHHHHHHTSE..EEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEE CS
  COesterase 100 eakkklPVlVwihGggfqtgsase.....ydgsaLaaegnvi..vVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfG 191
                 +ak +  +++ ihGg+f++gsa+        ++ L+++   +  v ++ YRl +    + +  + p  ++llD ++A +++     + G dp+++ ++G
  CDO69546.1  81 KAKPGEKIVMHIHGGAFYVGSAHPdeetaNIPRGLVSHSMSVerVLSVDYRLSAT---HPDPPANPFPAALLDSIAAYQYLVV---EVGFDPQNIAVAG 173
                 5555556999************554456667889999985555689*****9863...44556666679**********9955...5578********* PP

                 ETHHHHHHHHHH CS
  COesterase 192 esAGaasvslll 203
                 +sAGa ++ +l+
  CDO69546.1 174 DSAGANIAFALV 185
                 *****9886665 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00013      0.57      47      81 ..     150     184 ..     146     188 .. 0.88
   2 !    5.3   0.0    0.0027        12     107     205 ..     236     343 ..     222     345 .] 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00013
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHH CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaa 81 
                   D iaa ++l+ e   d++++a+ G S+G   + a+
    CDO69546.1 150 DSIAAYQYLVVEVGFDPQNIAVAGDSAGANIAFAL 184
                   99**************************8776665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0027
                   STTS..THH.HCCCC--TTTCHHHHHHHHHH-CGGG--.....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S...STTSSH CS
  Peptidase_S9 107 dtdl..lte.eymewgnpeeneegykelspyspldnvk.....aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegH...gvgkpr 192
                   +t++  +++  y +  +pe+ ++++ +lsp+sp+ + +       p++++  G a   + +  ++  +++L+  g++v + i pd+ H   ++  ++
    CDO69546.1 236 ETRFdaYGTpAYLGPLDPEQAKTNR-YLSPASPYIKPTeglfrGFPRTFISAGGA--EILLDDSMVTAERLKADGVDVTVDIVPDAVHdflSFPWHE 329
                   4444557777889988886666655.99999999987788887788888888876..7888999************************766555566 PP

                   HHH.HHHHHHHHHH CS
  Peptidase_S9 193 akv.eelarllaFl 205
                    ++ + l+r+ ++l
    CDO69546.1 330 PERtDALKRICKWL 343
                   66667777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2762.05
//
Query:       CDO69547.1  [L=929]
Description: hypothetical protein BN946_scf184785.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00041   19.2   1.7    0.00041   19.2   1.7    3.1  3  Hamartin       Hamartin protein
  ------ inclusion threshold ------
        1.1    9.6   6.3       0.38   11.0   1.1    2.9  2  HALZ           Homeobox associated leucine zipper
        1.5    9.4  27.5        0.3   11.6   4.1    3.9  3  KELK           KELK-motif containing domain of MRCK Ser/Thr p
        3.9    7.8  24.5        8.1    6.7   2.1    3.5  3  THOC7          Tho complex subunit 7


Domain annotation for each model (and alignments):
>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.7   9.1e-08   0.00041      53     162 ..     190     305 ..     185     309 .. 0.80
   2 !    5.6   0.3    0.0012       5.3     182     383 ..     371     602 ..     366     740 .. 0.46
   3 ?   -3.0   4.2      0.46   2.1e+03     406     499 ..     823     916 ..     786     921 .. 0.46

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.1e-08
    Hamartin  53 eiLssvrephdkhLlDklneclkkaatrLqaLtLLghvvrrq..PsWlhKiakhpllksLLKlLktekdivvLmtgvLvlitLLpmip....qsvkqyL 145
                 ++L+ v   + + +l  l  c  +++trLq L LL     +   P   h +a+hpl+ sLL  L+ ++   v + ++ v+i LLp+      + +k +L
  CDO69547.1 190 DVLVRVALERPQDFLTELYHCFVSPSTRLQLLILLNAYTSHPdfPEYAHVLASHPLMTSLLNSLTFDNSSTVCTIALTVMIKLLPIFAvkacEDLKRLL 288
                 6777777766677889999*************999877765344899**************************************98622223456777 PP

    Hamartin 146 pdlfevFgrLaswnlkn 162
                 p l  v  r   w+ ++
  CDO69547.1 289 PHLLIVLARILCWRERQ 305
                 77777777777776555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0012
    Hamartin 182 FhrLYGmyPcnfvsYLrs..hysmkenlet.....Feevik.........PmLetVRiHPeLvtgtkdtEl.dptRWKklEthDvVieCaklsldpkea 263
                 F  LY  +Pcn + +Lr    y + ++++      +ee++          P+L +  +HP L+     +El +p+ W +++   +V   + l +  +  
  CDO69547.1 371 FTFLYYLFPCNTIRFLRYpvRYLTDNKADSlyamdWEEALDedkirsksePLLRRHVLHPLLIWREAKEELeQPDFWAQYDIPRIVGSATMLEVRNAAL 469
                 77899***********9633566666665422222455555899999999***9999******999999984578999999988887666666655533 PP

    Hamartin 264 sceegyssv....................aadptsspytdlqsstgsststpistkr................lqlsslsgtspavlsvessrskddei 326
                   + +  s                                +  s++ ++ +++ t++                  ++++s ++   +sv+ +++ d+ei
  CDO69547.1 470 GLRQEHLSRatparppsppparaggastpD----------FDGSHAGNAGSTVPTSSfldtihpqaeagpstaPVVRQISLAEMVATSVALKSGLDIEI 558
                 333322222356666666644333332220..........22233333333333333221111111111111111333333333333333333333333 PP

    Hamartin 327 slWSPs.svcgmttppsspgivptte.lelsssasllsskvsstpeaagkatpetTPak 383
                     Ps + ++   p +s+g + ++   ++++++ ++                ++TP++
  CDO69547.1 559 --VDPSpAWSAALFPSQSRGHSFSRAeRDSAHPTEKEG-------------EASATPSQ 602
                 ..333322333334444444443333333333333333.............33333332 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.46
    Hamartin 406 rksspprkdeksesskpdlskqeevenekeleeslkskssvtlseLsdvikelleaesedsvekeeeeaaisqelseiteekketlvsrgglds 499
                 +++++   ++   + +  l+ +++++  ++  e+++s + ++   Ls  +++++++ +e   +++ee  ++ +e+++++e  k ++ +r gl s
  CDO69547.1 823 QQAQADMGENAAAQRQQILELENKMKLCQKELEAARSSKKLHGDPLSVEEHRRVQKANERLRNENEELREEIEEVKAMVEVLKAQVSGRTGLVS 916
                 2222222222222222222222222222222222223333333334444444455555555555555555556666555555555666666655 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.58   2.6e+03      30      42 ..     623     635 ..     622     636 .. 0.87
   2 ?   11.0   1.1   8.5e-05      0.38      21      42 ..     880     901 ..     875     902 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.58
        HALZ  30 kLkaelqeLkekl 42 
                 +L+ e+  Lk+ l
  CDO69547.1 623 ALQREVLLLKNDL 635
                 79********976 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.5e-05
        HALZ  21 ydsLkkenekLkaelqeLkekl 42 
                 ++ L++ene+L+ e++e k+++
  CDO69547.1 880 NERLRNENEELREEIEEVKAMV 901
                 899****************986 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.1   6.6e-05       0.3      13      60 ..     663     710 ..     654     723 .. 0.83
   2 ?    2.3   4.9      0.05   2.3e+02      20      46 ..     836     863 ..     811     872 .. 0.75
   3 ?    6.3   2.7    0.0029        13      20      49 ..     873     902 ..     870     911 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.6e-05
        KELK  13 kqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklse 60 
                 + E++ l+++l+e +  +    keLk+a++q   a++ +++ n  l++
  CDO69547.1 663 EVERQGLHNKLKEYKHTVTRLRKELKEAKEQAIAARTRYTDWNRELQD 710
                 569************************************987765554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.05
        KELK  20 q.kelaeaqErlksqkkeLkdaisqrkl 46 
                 q +++ e+++++k  +keL  a s +kl
  CDO69547.1 836 QrQQILELENKMKLCQKELEAARSSKKL 863
                 248899******************9997 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0029
        KELK  20 qkelaeaqErlksqkkeLkdaisqrklamq 49 
                 ++ ++ a+Erl+++++eL+++i+  k +++
  CDO69547.1 873 HRRVQKANERLRNENEELREEIEEVKAMVE 902
                 788999****************99887665 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.1    0.0018       8.1      37     105 ..     627     701 ..     599     728 .. 0.83
   2 ?    5.2   5.5    0.0056        25      49     105 ..     805     861 ..     782     864 .. 0.93
   3 ?    6.7   1.8    0.0018       8.2      76     104 ..     872     900 ..     868     910 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
       THOC7  37 eleqlkedllldfaafelsie......rlqllakanerereryeaekeeieseieavreeieelkaqLeearatr 105
                 e+  lk+dl l++ + +  ++      +  +l++  e er+ + ++ +e +++   +r+e +e k+q  +ar+ +
  CDO69547.1 627 EVLLLKNDLNLELWTTRENVKhigrlyKERVLSRNEEVERQGLHNKLKEYKHTVTRLRKELKEAKEQAIAARTRY 701
                 56667888888888888888888888788888888888*****************************99999866 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0056
       THOC7  49 faafelsierlqllakanerereryeaekeeieseieavreeieelkaqLeearatr 105
                 +a f +  ++++ll++a ++  + + ++ +   ++i +++++++ ++++Le+ar  +
  CDO69547.1 805 LAMFTSKYKKMELLLQASQQAQADMGENAAAQRQQILELENKMKLCQKELEAARSSK 861
                 677999999********************************************9876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0018
       THOC7  76 ekeeieseieavreeieelkaqLeearat 104
                 e+++++++ e +r+e+eel++++ee +a+
  CDO69547.1 872 EHRRVQKANERLRNENEELREEIEEVKAM 900
                 44555566666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 5941.63
//
Query:       CDO69548.1  [L=698]
Description: hypothetical protein BN946_scf184785.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-232  773.5  30.4   1.5e-232  773.1  30.4    1.0  1  HSP90           Hsp90 protein
      1e-15   58.2   0.0      2e-15   57.3   0.0    1.5  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
      3e-10   40.0   0.1      3e-10   40.0   0.1    1.9  2  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.034   14.1   0.3        0.1   12.6   0.0    1.9  2  Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
        4.5    7.4  17.4        4.3    7.4  11.9    2.4  2  DUF2052         Coiled-coil domain containing protein (DUF205


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.1  30.4  4.1e-236  1.5e-232       1     510 [.     183     685 ..     183     693 .. 0.96

  Alignments for each domain:
  == domain 1  score: 773.1 bits;  conditional E-value: 4.1e-236
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHH CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekeeekeveeeeeeeeeeeeeeeeeakveeeeeeeeekkktkkvketvkewellNkqkpiWlrkpkevteee 99 
                 eyleek++ke+vkk+SeFi++pi+l + ke+ekeve+eee +e     ++e++k+ee+e+ee+++kk+k++ke++  +e+lNk+kpiW+r+p+e+t+ee
  CDO69548.1 183 EYLEEKRIKEIVKKHSEFISYPIQLAVVKEVEKEVEDEEEVKE-----DKEDSKIEEVEDEEKKEKKKKTIKEKQVTNEELNKTKPIWTRNPSEITQEE 276
                 8**********************************98888665.....468999*******999*********************************** PP

                 HHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTSSXGGGTTXEEEEEESSSXSSSTHHHHHT CS
       HSP90 100 YkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedllPkyLsFvkGvvdsddLPLNvsREtlqq 198
                 Y++FYksl++d+e++lavkhfs+eg++efkaiLfvPkrap+dlfe+  kkk+nnikLYvrrVfi+d++edl+P+yL+F+kG+vds+dLPLN+sREtlqq
  CDO69548.1 277 YAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFES--KKKRNNIKLYVRRVFIMDDCEDLIPEYLNFIKGIVDSEDLPLNISRETLQQ 373
                 *********************************************8..89************************************************* PP

                 CHHHHHHHHHHHHHHHHHHHTSXHHH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHHHSXTTXXEEEEEEXSSHHHHHT CS
       HSP90 199 nkilkvikkklvrKvlemlkklaeekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYvermkekqksiYyiageskeevek 297
                 nkilkvi+k+lv+K+le+++++ae+ke+++kfy++f+kn+klGi+ed++nr+kla++lrf+s+ks ee+tsL+dY++rm e qk+iYy++ges ++v++
  CDO69548.1 374 NKILKVIRKNLVKKCLELFSEIAEDKENFNKFYEAFGKNIKLGIHEDAQNRSKLAEFLRFYSTKSMEEMTSLKDYITRMPEVQKNIYYLTGESLSAVKD 472
                 *************************************************************************************************** PP

                 SGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXT CS
       HSP90 298 spflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekkkkeelkkkfeeltkllkevlkdkvekvkvserlvdsPcvlvtse 396
                 spfle lkkkg+evl+lvdpiDey+++qlke++g+klv+v+keglelee+eeekk++ee++k+fe+l+k++k++l+dkvekv+vs+r++dsPcvlvt++
  CDO69548.1 473 SPFLEVLKKKGFEVLLLVDPIDEYAITQLKEFDGHKLVCVSKEGLELEETEEEKKAREEEAKQFEDLCKAVKDALGDKVEKVVVSNRITDSPCVLVTGQ 571
                 *************************************************************************************************** PP

                 TSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHHHTTXXXSXHHHHHHHHHHHHTTTTHXXSTT CS
       HSP90 397 ygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeeakdlaellyetallesGfsledpasfakrierllklslgidede 495
                 +gws+nmerimkaqalrd+s+ssym+skktle+np++piikeLk+kv+edk+d++++dl+ ll+etall+sGfsl+dp+sfakri+r++ l+l++de+e
  CDO69548.1 572 FGWSSNMERIMKAQALRDSSMSSYMASKKTLELNPHNPIIKELKRKVAEDKADKSVRDLTYLLFETALLTSGFSLDDPTSFAKRIHRMIALGLDVDEQE 670
                 ***********************************************************************************************7666 PP

                 TTTTGGGXGGGXXXX CS
       HSP90 496 eveeeeeveeeeeee 510
                 e + ++++++e+ ++
  CDO69548.1 671 ESAPAASTSTEAPAS 685
                 666555544443333 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   5.6e-19     2e-15       1     111 [.      26     180 ..      26     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 5.6e-19
                 EHHHHHHHHHHHHHHHHHHH..........HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.....HCSTCHTSTSSSH CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf..........atkageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.....ddstkrggggtGl 76 
                 ++e++Lr++isn++d+++k+            +++++ ++i+++++++ +s++D+GiG++k+dl        k+++  f++     +d +++  g++G+
  CDO69548.1  26 NKEIFLRELISNASDALDKIryasltdpsvLDTGKDLYIRITPDKENKILSIRDTGIGMTKADLVnnlgtiaKSGTkGFMEalqsgADISMI--GQFGV 122
                 5899****************99877766543366688999998888**************************999999999*9644444444..66666 PP

                 HHHHH................HH.HHH.HTTTEEEEEEET.....TTEEEEEEEEESS CS
   HATPase_c  77 Glsiv................kk.lve.lmgGeiwvesep.....grGttftftlple 111
                 G++ +                ++ ++e   gG+++++ +      grGt+++++l+++
  CDO69548.1 123 GFYSAylvaervqvitkhnddEQyIWEsAAGGTFTITPDTvnpplGRGTEVRLFLKED 180
                 666664448888888888888556888779999999444456679********99987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   8.4e-14     3e-10       1      99 [.      24     145 ..      24     152 .. 0.81
   2 ?   -4.3   1.2       4.3   1.5e+04     117     125 ..     233     241 ..     215     262 .. 0.49

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.4e-14
  HATPase_c_3   1 ysl.ekAlaelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakr.......kstslG 71 
                  ys+ e+ l el+ N+ dA  +                   + i+ +k+   ++ ++i+D G Gm++++l n l ++a+s ++          +   +G
   CDO69548.1  24 YSNkEIFLRELISNASDALDKIryasltdpsvldtgkdlyIRITPDKE---NKILSIRDTGIGMTKADLVNNLgTIAKSGTKGFMealqsgaDISMIG 118
                  566688899********987778899999*********6666665554...689*****************7747999998865433333334566** PP

  HATPase_c_3  72 kkGiGlklAslslgkkltvitkkegess 99 
                  ++G+G + ++  ++++++vitk++++++
   CDO69548.1 119 QFGVG-FYSAYLVAERVQVITKHNDDEQ 145
                  *****.999999***********98765 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 4.3
  HATPase_c_3 117 eeltveeie 125
                  ee++ ee +
   CDO69548.1 233 EEVEDEEKK 241
                  333333222 PP

>> Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.96   3.5e+03     139     156 ..     236     253 ..     196     309 .. 0.59
   2 ?   12.6   0.0   2.8e-05       0.1     111     185 ..     511     601 ..     505     611 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.96
                     .-HHHHHHHHHHHHHHHT CS
  Cofac_haem_bdg 139 eseeyraaleevlaehhc 156
                     e+ee++++ +++++e++ 
      CDO69548.1 236 EDEEKKEKKKKTIKEKQV 253
                     344444444444444443 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.8e-05
                     HHHTT......------SSSS........-HHHHHHHHHHHHHHHT-.........................TTTHHHHHHHHHHHHHHHHHHHH CS
  Cofac_haem_bdg 111 kvareGleslseeeereraslpaeseileseeyraaleevlaehhcg.........................eakeealerfveaQvlwDetMAe 180
                     +v++eGle l+e ee+++ +          ee+ +++e++ ++ + +                          + ++++er+++aQ+l+D+ M++
      CDO69548.1 511 CVSKEGLE-LEETEEEKK-AR---------EEEAKQFEDLCKAVKDAlgdkvekvvvsnritdspcvlvtgqFGWSSNMERIMKAQALRDSSMSS 594
                     57888875.444333333.22.........223333333333333223334444666688888888899998888999***************** PP

                     HHHH..- CS
  Cofac_haem_bdg 181 siaa..a 185
                      +a+  +
      CDO69548.1 595 YMASkkT 601
                     9987543 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.9    0.0012       4.3      63     151 ..     183     286 ..     169     300 .. 0.42
   2 ?    2.6   0.2     0.036   1.3e+02      79     108 ..     507     541 ..     462     631 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
     DUF2052  63 rreeeaaaaerleaqqeel.........eeeeeeeeeeeeeeeeeeeeeeedekekaeadeedeeeeeekeekeeeeekeeeaeaevlseee....... 145
                 + +ee+ ++e +++++e           +e+e+e e+eee +e++e+++ e+ ++++++++++++ +   e++ ++ee ++++  ++ ++ e       
  CDO69548.1 183 EYLEEKRIKEIVKKHSEFIsypiqlavvKEVEKEVEDEEEVKEDKEDSKIEEVEDEEKKEKKKKTIK---EKQVTNEELNKTKPIWTRNPSEitqeeya 278
                 4455555555555554444788887776333333333333322222222222221111111111111...23333333334333333333333111134 PP

     DUF2052 146 ..reelre 151
                    + l +
  CDO69548.1 279 afYKSLTN 286
                 44444444 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.036
     DUF2052  79 eel.....eeeeeeeeeeeeeeeeeeeeeeedeke 108
                 ++l     e  e ee eee++++eee ++ ed ++
  CDO69548.1 507 HKLvcvskEGLELEETEEEKKAREEEAKQFEDLCK 541
                 44455543122222333333323333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2384  (0.132969); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 4757.75
//
Query:       CDO69549.1  [L=275]
Description: hypothetical protein BN946_scf184785.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-14   53.9   0.0    3.9e-14   53.1   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    1.2e-11   45.1   0.0    3.3e-11   43.7   0.0    1.7  2  Methyltransf_25  Methyltransferase domain
      6e-07   30.1   0.0      2e-06   28.5   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
    1.3e-05   25.1   0.0      2e-05   24.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.022   14.0   0.0      0.035   13.4   0.0    1.2  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
      0.025   14.2   0.0      0.038   13.6   0.0    1.3  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.3e-17   3.9e-14       2      96 .]      50     149 ..      49     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.3e-17
                      EET-TTSHHHHHHH......HTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaeala......krg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv.edpekalkeiaRv 87 
                      ++G+GtG++++al       + + +++ ++++s+ m+++ ++ + +++  v++++++++  ++ed+  Dlvv+ +++h+  ++++ka +e+aR+
       CDO69549.1  50 EFGAGTGIFTRALLahpewtD-AiKELRAIEPSEGMREVFSKTVTDPR--VSVREGTFTASNIEDGWADLVVIAQAFHWAhPNHDKAAAEFARI 140
                      79************6765533.26****************99999998..99****************************99************ PP

                      EEEEEEEEE CS
  Methyltransf_11  88 LkpgGllvi 96 
                      Lkp+G++++
       CDO69549.1 141 LKPDGIVAF 149
                      *****9986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.1e-14   3.3e-11       2      97 .]      49     145 ..      48     145 .. 0.91
   2 ?   -3.1   0.0       4.4   1.3e+04      72      94 ..     223     246 ..     211     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.1e-14
                      EEET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl...g.kakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      +++G+GtG +t+al+++       +++ ++++se+m e   + +   +++v++++g +++ + edg  Dlvv+++a+h+ + ++++ka +e+ar
       CDO69549.1  49 VEFGAGTGIFTRALLAHPewtDaIKELRAIEPSEGMREVFSKTV--TDPRVSVREGTFTASNIEDGWADLVVIAQAFHWAH-PNHDKAAAEFAR 139
                      689************9965442589*******************..578************************98899865.7889******** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +Lkp+G
       CDO69549.1 140 ILKPDG 145
                      *****9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.4
                      ST.GGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25  72 ga.lhhlsdedlekalkeiarvLk 94 
                       + + +l +e+ +k+++ i  +L+
       CDO69549.1 223 KSyIAVLGPEEKQKVIDDIDAILQ 246
                      344556777788888888777765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   6.7e-10     2e-06       1      98 [.      49     146 ..      49     147 .. 0.90
   2 ?   -1.7   0.0       1.7   4.9e+03      66      71 ..     204     209 ..     159     247 .. 0.58

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.7e-10
  Methyltransf_12   1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdirevldni 89 
                      +e+G+GtG ++rall++       +e+ ++++s+ +      k+    + ++ + +++a +++d       Dlvv+++++h+  ++ +++ +++
       CDO69549.1  49 VEFGAGTGIFTRALLAHPewtdAIKELRAIEPSEGMR-EVFSKTVTDPRVSVREGTFTASNIEDG----WADLVVIAQAFHWAhPNHDKAAAEF 137
                      69******************98889999*********.666666666778999999999999876....89************99999****** PP

  Methyltransf_12  90 rklLkpgGr 98 
                      ++ Lkp+G+
       CDO69549.1 138 ARILKPDGI 146
                      ********7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
  Methyltransf_12  66 sfDlvv 71 
                       +D+v+
       CDO69549.1 204 VWDYVL 209
                      333333 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.8e-09     2e-05      20     119 ..      42     151 ..      19     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.8e-09
  Methyltransf_23  20 lraggrvLdiGcGtGillevl..rengf....svtgvDlspeaveiaekakkaqkdqfdeqeaae...pqgkfdlIvlrevlehvp.dppellr 103
                        ++ + +++G+GtGi+++ l   ++++    ++ ++++s+ + e  +k+ + + ++++e   +    ++g  dl+v  + +++ + ++ ++ +
       CDO69549.1  42 SSPPLNAVEFGAGTGIFTRALlaHPEWTdaikELRAIEPSEGMREVFSKTVTDPRVSVREGTFTAsniEDGWADLVVIAQAFHWAHpNHDKAAA 135
                      5677799**********999965555545556999*****9999988766666666663333333566778**************988****** PP

  Methyltransf_23 104 qiatllkpgGylllse 119
                       +a++lkp+G + +  
       CDO69549.1 136 EFARILKPDGIVAFIW 151
                      **********998755 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.035      21     112 ..      31     122 ..      23     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
       Rsm22  21 rvLdelaervpdflPkslldvgegpgtalwa..aselwe.eleevlvidaseellei.skelaadapelkeaalrrsvirealeleeadLviisyv 112
                 ++L  ++++v    P + +++g+g+g+ + a  a+  w   ++e+  i+ se ++e+ sk++++   +++e     +++ + +e   adLv+i+  
  CDO69549.1  31 QALSHIRKSVRSSPPLNAVEFGAGTGIFTRAllAHPEWTdAIKELRAIEPSEGMREVfSKTVTDPRVSVREG----TFTASNIEDGWADLVVIAQA 122
                 6799999999999*************965541134456659**************98577888877777776....55544555566799999865 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.038      11      79 ..      37     101 ..      29     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
  Methyltransf_28  11 qalgrpskklrliElGpGkGtLmadvLrtlrkflpefyea.leyhlvEaSpqlrerQknrLkekakevkk 79 
                      +++ r s++l+ +E+G+G+G +   +L +     pe+ +a +e+  +E S+ +re+ ++++ +   +v +
       CDO69549.1  37 RKSVRSSPPLNAVEFGAGTGIFTRALLAH-----PEWTDAiKELRAIEPSEGMREVFSKTVTDPRVSVRE 101
                      4555677889*************999975.....666677799*************99999885544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1929.15
//
Query:       CDO69550.1  [L=336]
Description: hypothetical protein BN946_scf185038.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-07   30.4   0.0    5.1e-07   29.5   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
    1.6e-06   28.7   0.0    2.7e-06   27.9   0.0    1.4  1  Asp_protease_2   Aspartyl protease
     0.0024   18.4   0.0     0.0039   17.7   0.0    1.3  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0052   16.3   0.0     0.0086   15.6   0.0    1.3  1  Peptidase_A2B    Ty3 transposon peptidase


Domain annotation for each model (and alignments):
>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.1e-10   5.1e-07      32     131 ..      29     129 ..      14     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.1e-10
       RVP_2  32 patvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgie.fladlilLdl.kdlDviLgmdWLsknkanidcaekkv 128
                 p   L+dsG sH F+  +fv+k+++++ ++  pl ++   gss  + + +++++i+  + e + +d  + +l k++  +Lg  WL+ ++  id  ++++
  CDO69550.1  29 PFRALIDSGSSHCFVDSEFVEKYQIRTYSV-PPLRLSLFDGSSNHVITCSTNLPIHFPSGEvIDIDFYVTPLdKSVSAVLGYSWLTTYNPLIDWKKRSI 126
                 6778**********************9987.47777777667777778889999999655414567766665367999********************9 PP

       RVP_2 129 tlt 131
                  + 
  CDO69550.1 127 QFR 129
                 886 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.1e-10   2.7e-06       9      90 .]      29     111 ..      21     111 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 6.1e-10
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds..lklggltlknvpalvldlgeeidglLGmdf 90 
                     p+r+l+D+G+s++++++e++ek ++++++ + + r+s+ +g++   +    +  + + + ++ +++++v++l++++  +LG+++
      CDO69550.1  29 PFRALIDSGSSHCFVDSEFVEKYQIRTYSVP-PLRLSLFDGSSNHVITCSTNlpIHFPSGEVIDIDFYVTPLDKSVSAVLGYSW 111
                     89***************************97.9********98888877777346667789999*****************997 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.6e-07    0.0039       9      91 ..      29     113 ..      27     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.6e-07
                      EEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEE.EEE.EEEE.EETTEEEEEEEEEES.SSSEEEEHHHHH CS
  gag-asp_proteas   9 pvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrv.rld.svkiggielrnvsavvlege.lddlLLGldfLk 91 
                      p+++l+D+G s+ ++ +e++e+ ++++ + + + +++  +g+     +   +  +++ + e+ +++++v++ +     +LG ++L 
       CDO69550.1  29 PFRALIDSGSSHCFVDSEFVEKYQIRTYSVP-PLRLSLFDGSSNHVITcSTNlPIHFPSGEVIDIDFYVTPLDkSVSAVLGYSWLT 113
                      899************************9975.999**99998855433133336888899***********8835889*****996 PP

>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-06    0.0086      47      86 ..      31      70 ..      27     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-06
  Peptidase_A2B 47 ktlfdsgsptsfirrdivellkleiyetpplrfrgfvatk 86
                   ++l+dsgs   f+  + ve  ++ +y  pplr+  f  + 
     CDO69550.1 31 RALIDSGSSHCFVDSEFVEKYQIRTYSVPPLRLSLFDGSS 70
                   689*****************************98775444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2547.20
//
Query:       CDO69551.1  [L=436]
Description: hypothetical protein BN946_scf185038.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-14   53.0   0.0    6.5e-14   52.0   0.0    1.6  1  Retrotrans_gag   Retrotransposon gag protein
    4.6e-09   36.1   0.0    1.3e-08   34.7   0.0    1.6  2  DUF4939          Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
       0.09   12.4   0.0       0.15   11.7   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
        1.7    6.9   5.4        2.2    6.5   5.4    1.1  1  RAP1             Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   1.4e-17   6.5e-14       3      94 ..     172     267 ..     170     269 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.4e-17
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekfl 91 
                     a ++l+g A++w++++  +  ++     ++s++ ++++++++f p +++ ++e+el +lr  +++ +++Y+t+f++la+q++  + ++ +  +f+
      CDO69551.1 172 AISFLKGTALQWFEPYLLEGATDnpplfISSYEAFQDELRTNFGPYDTSGAAEHELMNLRMtENQRIAKYITQFTRLATQVR--WGNAPLRYRFY 264
                     7789***********998888878**********************************************************..*********** PP

  Retrotrans_gag  92 aGL 94 
                     +GL
      CDO69551.1 265 DGL 267
                     **9 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.8e-12   1.3e-08      29     107 ..     133     217 ..     110     221 .. 0.80
   2 ?   -2.5   0.0         1   4.5e+03       5      41 ..     237     273 ..     234     279 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.8e-12
     DUF4939  29 petfd.GdtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi....kkdsp.llndyraflaemkrvfGwe 107
                 p+++d  d ++l  f  q       + +tfssd  kvt+ i+ l+G al+w  py+      + p +++ y af +e++  fG  
  CDO69551.1 133 PDQLDrSDPNKLRLFFAQLELVFKAHPRTFSSDEKKVTYAISFLKGTALQWFEPYLlegaTDNPPlFISSYEAFQDELRTNFGPY 217
                 666653577899999999999889999****************************944322334435799************965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
     DUF4939   5 qlikallalprlrqkrrwrn.pipfpetfdGdtdrlpe 41 
                 ++ k + +++rl  + rw n p+ +   +dG  +rl +
  CDO69551.1 237 RIAKYITQFTRLATQVRWGNaPLRY-RFYDGLPNRLKD 273
                 5566777888887777776525555.456777777655 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.3e-05      0.15      54      81 ..     225     252 ..     208     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
  Retrotran_gag_2  54 kklfslkmkegesvadhinkleelvneL 81 
                      ++l++l+m+e++ +a++i++++ l+++ 
       CDO69551.1 225 HELMNLRMTENQRIAKYITQFTRLATQV 252
                      789*********************9986 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.4   0.00048       2.2     128     163 ..     302     337 ..     282     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00048
        RAP1 128 vvktskpkststeslksssdskskasaksnvksask 163
                 ++  ++ ++ts ++ ksssdsks +s++s+  s + 
  CDO69551.1 302 KAEQARESGTSKSGHKSSSDSKSGSSSQSGHASNTT 337
                 45667889999****************999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3027.16
//
Query:       CDO69552.1  [L=360]
Description: hypothetical protein BN946_scf185038.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-33  115.4   1.2    3.6e-33  114.0   0.1    2.2  2  RT_RNaseH    RNase H-like domain found in reverse transcripta
    1.4e-27   95.7   0.3    3.9e-27   94.2   0.0    1.9  2  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    2.8e-13   49.9   0.2    4.7e-13   49.2   0.2    1.4  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.033   14.2   0.0    1.7  1  DUF3425      Domain of unknown function (DUF3425)
        0.2   11.4   0.5       0.53   10.0   0.0    1.9  2  Get5_C       Get5 C-terminal domain


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.76   2.7e+03      62      84 ..      47      70 ..      42      75 .. 0.79
   2 !  114.0   0.1     1e-36   3.6e-33       2     105 .]     125     230 ..     124     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.76
                HHHHHHHTS.--EEEE-SS--TTT CS
   RT_RNaseH 62 kkfrhylqg.rkftvitDhknlky 84
                ++++++lq+ +kf+++   +n ++
  CDO69552.1 47 QHIKEVLQRlQKFKLYARADNCEF 70
                688889999888999988887765 PP

  == domain 2  score: 114.0 bits;  conditional E-value: 1e-36
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHH CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarW 98 
                 p++++++etD sd+ i ++L  ++e+ e +pi f Sr+ls+ae ny+t++kellAi +++k++rhyl+g r  + v+tDhknl+y+ ++k l+ ++arW
  CDO69552.1 125 PDHQITIETDTSDYTITGILLITTESRELHPIVFHSRTLSRAELNYDTHDKELLAIFECFKTWRHYLEGsRTpIDVVTDHKNLEYFSTMKLLTCHQARW 223
                 8899*****************************************************************8778************************** PP

                 HHHC-XX CS
   RT_RNaseH  99 aleLsey 105
                 +++Ls++
  CDO69552.1 224 SEFLSQF 230
                 *****98 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   6.8e+03       6      25 ..      43      62 ..      39      77 .. 0.59
   2 !   94.2   0.0   1.1e-30   3.9e-27       4      98 ..     102     196 ..      99     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
  RT_RNaseH_2  6 ekafeklkealtsapvLahp 25
                 e+ ++++ke l+  +  +++
   CDO69552.1 43 EEHWQHIKEVLQRLQKFKLY 62
                 55666666666655554444 PP

  == domain 2  score: 94.2 bits;  conditional E-value: 1.1e-30
  RT_RNaseH_2   4 eqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgrkf 98 
                   + ++f++lk+ +ts  +L+h +pd ++++etD Sd+ i ++L+ + + ++++pi f Sr+ls ae ny+t++kellAi++++k++rhyl+g+++
   CDO69552.1 102 CCWDSFNALKKTFTSTLILHHWEPDHQITIETDTSDYTITGILLITTESRELHPIVFHSRTLSRAELNYDTHDKELLAIFECFKTWRHYLEGSRT 196
                  57789*******************************************999*****************************************865 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.2   1.3e-16   4.7e-13     132     222 .]       1      82 [.       1      82 [. 0.98

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.3e-16
                 --ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 132 lpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvtl 222
                 +p+G+ +  + f+ f+ne++ +l      + +++Y DDili+s+s ee+ +++++v ++l++ +l   ++ +++       + +kyLG++l
  CDO69552.1   1 MPFGLSNTLAAFQCFVNEVFVDLLD----ICVVVYLDDILIYSNSLEEHWQHIKEVLQRLQKFKLYARADNCEFH-----VTFIKYLGYIL 82 
                 8***********************8....9*********************************************.....8*******975 PP

>> DUF3425  Domain of unknown function (DUF3425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.2e-06     0.033      18      60 ..     267     307 ..     248     354 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.2e-06
     DUF3425  18 lpenlrPtelQlriaHpveidvlpwpelRdrllrafqeeeide 60 
                  p+n+rP+ +Q+++  +++  +l+ p lR  +l   ++e++++
  CDO69552.1 267 NPHNFRPVVMQEQLSASLQATYLWQPVLRASFLM--DDEQLQS 307
                 499******************************9..3333333 PP

>> Get5_C  Get5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00015      0.53      17      32 ..      42      58 ..      37      58 .. 0.84
   2 ?   -2.7   0.2       1.4   5.1e+03       4       7 ..      95      98 ..      94      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00015
      Get5_C 17 fknd.aearavleRLqK 32
                 ++  +++++vl+RLqK
  CDO69552.1 42 LEEHwQHIKEVLQRLQK 58
                566669**********9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
      Get5_C  4 VPWn 7 
                VPWn
  CDO69552.1 95 VPWN 98
                9**8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2642.56
//
Query:       CDO69553.1  [L=164]
Description: hypothetical protein BN946_scf185038.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-12   45.3   0.0    1.1e-11   45.0   0.0    1.1  1  rve       Integrase core domain
     0.0017   18.1   0.0     0.0026   17.5   0.0    1.3  1  rve_3     Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.2e-15   1.1e-11      15     118 ..       7     107 ..       1     108 [. 0.91

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1.2e-15
         rve  15 vripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhr 113
                 +  p+ gg   +l+v+d  ++ ++ +++ d  +as +++l    v + + v    v+sD gse++s+ f  + + l++r+ ft  ++p+ nG  Er ++
  CDO69553.1   7 L--PSPGGYTAILIVMDRLTKQAIFIPTHDTLTASELADLFVLHVFSKHRV-LAHVTSDWGSEFVSHFFCSLGKALDMRLHFTSGYHPEGNGQTERVNQ 102
                 3..5778889*********************9*******999888888887.9********************************************** PP

         rve 114 tlkde 118
                 tlk+ 
  CDO69553.1 103 TLKQY 107
                 ***96 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.9e-07    0.0026       2      31 ..      80     109 ..      79     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.9e-07
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdell 31 
                 +++l+++  ++P  Ng  E++n+tl++ l 
  CDO69553.1  80 DMRLHFTSGYHPEGNGQTERVNQTLKQYLR 109
                 5899**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1167.43
//
Query:       CDO69554.1  [L=88]
Description: hypothetical protein BN946_scf185038.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0086   16.0   1.2     0.0086   16.0   1.2    1.7  2  DUF5089          Domain of unknown function (DUF5089)
  ------ inclusion threshold ------
      0.012   15.8   0.5      0.012   15.8   0.5    1.1  1  RasGAP_C         RasGAP C-terminus
      0.022   14.8   0.4      0.025   14.7   0.4    1.1  1  COG2             COG (conserved oligomeric Golgi) complex com
       0.04   14.7   0.4      0.052   14.4   0.4    1.3  1  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib
      0.049   13.6   0.1      0.054   13.5   0.1    1.1  1  FlxA             FlxA-like protein
       0.16   12.2   6.7       0.19   11.9   6.7    1.1  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun


Domain annotation for each model (and alignments):
>> DUF5089  Domain of unknown function (DUF5089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.2   2.9e-06    0.0086     136     172 ..      16      52 ..      11      62 .. 0.90
   2 ?   -0.4   0.7       0.3     9e+02     107     131 ..      64      76 ..      52      88 .] 0.36

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
     DUF5089 136 ektdkeLekilnglkslkkeaevQnkeikkqkskikd 172
                 ++t++eL++++++l++l+++aev  ke++ qk +++ 
  CDO69554.1  16 DQTSEELNSVRKELRTLQESAEVLLKEAEWQKAQVEA 52 
                 69******************************99985 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
     DUF5089 107 keeeakeeeedkkeeeefipedkel 131
                 +            ++ee++  + e 
  CDO69554.1  64 E------------NDEEYEGSGREE 76 
                 1............222222222222 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.5   3.9e-06     0.012      37      83 ..      14      60 ..       1      85 [. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.9e-06
    RasGAP_C 37 dirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienv 83
                d  + ++  +++++El++l+e  + L +  +  + q+e Y +y+e+ 
  CDO69554.1 14 DYDQTSEELNSVRKELRTLQESAEVLLKEAEWQKAQVEAYIEYLEEE 60
                556667778899********************************975 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   8.2e-06     0.025      56     109 ..      14      67 ..       3      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.2e-06
        COG2  56 dFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakel 109
                 d+ + S++L ++++el++++ + + + k+ e  ++++++ +e +e+++++ ++ 
  CDO69554.1  14 DYDQTSEELNSVRKELRTLQESAEVLLKEAEWQKAQVEAYIEYLEEEVAAENDE 67 
                 5667799****************************************9988775 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.7e-05     0.052      34      68 ..      19      59 ..       5      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                     H.....CCHHHCCCTTTSC.CHCCHHHHHHHHHHHHHHHHS CS
  Methyltransf_1N 34 s.....elkelpkllkqde.elpalaelkqaleeYfageek 68
                     s     ++kel +l +++e +l+++++ k+++e+Y++ +e+
       CDO69554.1 19 SeelnsVRKELRTLQESAEvLLKEAEWQKAQVEAYIEYLEE 59
                     13466699***************************998776 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.054      24      85 ..      20      81 ..      10      88 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
        FlxA 24 kQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqseke 85
                ++++++ k+L+ l+es e   +e + q+ +++a I+ l+ ++a    ++ e   +++++ ++
  CDO69554.1 20 EELNSVRKELRTLQESAEVLLKEAEWQKAQVEAYIEYLEEEVAAENDEEYEGSGREESEGED 81
                678999**********9999999*******************99887776655555554444 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.7   6.5e-05      0.19      26      90 ..      14      75 ..       9      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.5e-05
      CENP-Q 26 dfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkke 90
                d++++++e ++++++L+++++s e L +e e +++     +++++ Le+++ ae  e+ e+  +e
  CDO69554.1 14 DYDQTSEELNSVRKELRTLQESAEVLLKEAEWQKAQ---VEAYIEYLEEEVAAENDEEYEGSGRE 75
                9*************************9998888875...56899999999999999988755554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1634  (0.0911373); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 622.06
//
Query:       CDO69555.1  [L=155]
Description: hypothetical protein BN946_scf185038.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.0   7.3       0.22   11.3   7.3    1.3  1  Coilin_N    Coilin N-terminus
       0.29   11.6   4.2       0.39   11.1   4.2    1.2  1  DUF4019     Protein of unknown function (DUF4019)
        1.2    9.2   7.3        2.6    8.1   7.3    1.5  1  Eapp_C      E2F-associated phosphoprotein
        2.6    8.3   8.6        3.6    7.8   6.6    2.1  2  Zn_clus     Fungal Zn(2)-Cys(6) binuclear cluster domain
        7.5    5.2   6.4        8.3    5.1   6.4    1.0  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.3   6.2e-05      0.22      67     126 ..       2      60 ..       1      68 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.2e-05
    Coilin_N  67 lrdndcirVklegsetkleaqesededsresasksasttkqkkkkKrekkqeeqdeqkas 126
                 lr+++ +r+++e+++++  a e++++++ e +++++++ ++ +k+K e++ +e++  ++s
  CDO69555.1   2 LREAEELRAMVEWDKRERAAREKVEQEQWEHEAREKAERERLEKEKAENERKERE-AAKS 60 
                 8********************************9999999999999999444443.3333 PP

>> DUF4019  Protein of unknown function (DUF4019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   4.2   0.00011      0.39      16      69 ..      12      67 ..       1      70 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
     DUF4019 16 esWeeasalfkkavteeewekalk..avraplGavksRklasaeearslpgaPdGe 69
                  W++  ++++++v++e+we++++  a r++l + k+ + ++++ea +  + P+Ge
  CDO69555.1 12 VEWDKRERAAREKVEQEQWEHEARekAERERLEKEKAENERKEREAAKSRKRPAGE 67
                57*****************998862267999*999999999999999999999987 PP

>> Eapp_C  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.3   0.00073       2.6      68     130 ..      12     102 ..       4     105 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00073
      Eapp_C  68 vdkeevlkykeaesekkkkkkkkskkkeekeeeaeaeeaeeeeeeeeee............................eesyhpvkCseCst 130
                 v+++++ +  +++ e+++ ++++++k e+++ e+e++e+e++e+e +++                            + +   v C +C++
  CDO69555.1  12 VEWDKRERAAREKVEQEQWEHEAREKAERERLEKEKAENERKEREAAKSrkrpageapggsspkktcrgkgkaqednQPVESTVPCDYCKK 102
                 4555555444444444444433333333333333333333332222222456788899999999999999999988777788899****86 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.4     0.007        25      18      33 ..      96     109 ..      75     114 .. 0.72
   2 ?    7.8   6.6     0.001       3.6       2      31 ..      96     129 ..      95     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.007
                 SS-HHHHHCTHHHCCC CS
     Zn_clus  18 PaCsnCkklnleCtfy 33 
                 P C  Ckk +  C  y
  CDO69555.1  96 P-CDYCKKTGQRCL-Y 109
                 4.888888887776.5 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.001
                 S-HHHHHCT---ST.SSSS...-HHHHHCTHHHC CS
     Zn_clus   2 aCdnCrkkKvKCda.kkPa...CsnCkklnleCt 31 
                 +Cd C+k   +C + ++++   C  C    + C+
  CDO69555.1  96 PCDYCKKTGQRCLYrGNGHvrsCLGCHAAHVACQ 129
                 7************999999999***********8 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.4    0.0023       8.3     237     287 ..      18      68 ..       2     117 .. 0.38

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0023
  Presenilin 237 eeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessae 287
                 e++++ek ++e+ e++++e++e+e  ek++ ++e++e++ ++s++ ++ ++
  CDO69555.1  18 ERAAREKVEQEQWEHEAREKAERERLEKEKAENERKEREAAKSRKRPAGEA 68 
                 222222222222222222222222222221111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2331  (0.130013); expected 358.6 (0.02)
Passed bias filter:                      958  (0.053433); expected 358.6 (0.02)
Passed Vit filter:                       165  (0.00920297); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1084.04
//
Query:       CDO69556.1  [L=509]
Description: hypothetical protein BN946_scf185038.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.22   11.4   0.0        0.4   10.5   0.0    1.4  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.2e-05       0.4       7      60 ..     172     225 ..     168     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.2e-05
                      TS--GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-S CS
  2Fe-2S_thioredx   7 kypekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnl 60 
                      +y++ ++a+i+l  ++ +e+++  +++ + +a++++ p a++ e+  +Y  f  
       CDO69556.1 172 SYEDFHQAIIALYPEASDERKYSVADVENLIARRTKSPIANISELSAYYREFFA 225
                      6788899******************************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3483.87
//
Query:       CDO69557.1  [L=844]
Description: hypothetical protein BN946_scf185038.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-09   36.2   0.0    8.9e-09   35.3   0.0    1.5  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    0.00017   21.8   0.0    0.00037   20.7   0.0    1.5  1  RT_RNaseH        RNase H-like domain found in reverse transcr
     0.0086   16.6   0.0      0.019   15.5   0.0    1.5  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
  ------ inclusion threshold ------
      0.015   15.9   0.0       0.03   15.0   0.0    1.5  1  Asp_protease_2   Aspartyl protease
      0.053   13.3   0.0       0.12   12.1   0.0    1.6  1  Asp_protease     Aspartyl protease


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.5e-12   8.9e-09       3      96 ..     722     820 ..     720     824 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2.5e-12
  RT_RNaseH_2   3 eeqekafeklkealtsapvLahpdpd..kpfiletDaSdtgigavLsqedddgkerpiafaSr....klskaernysttekellAivwalkkfrhyll 94 
                  e q ka+e+lk+al ++p L+  +++  +p+il++D    ++g  L q d+++    ++++Sr    +l+k+e +  + ++el++++++l+  + yl 
   CDO69557.1 722 EPQLKAMEDLKQALLKSPALRAINYEspAPVILAVDTLYIAVGYHLAQCDEQKP--QVCYYSRfgliTLNKRESHVRQPKLELYGLFHTLQATKLYLI 817
                  67899****************9998823579********************655..899***988889*****************************9 PP

  RT_RNaseH_2  95 g.r 96 
                  g r
   CDO69557.1 818 GiR 820
                  954 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     1e-07   0.00037       4      87 ..     750     836 ..     747     843 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1e-07
                 S-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEE....E--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--EEEE-SS--TTTTT- CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreedgeerpiafaSr....klsgaernystiekellAivaalkkfrhylqg.rkftvitDhknlkylls 87 
                  p+il +D   +++g  L q +e++    ++++Sr    +l++ e+   + ++el+++ ++l+  + yl g r+  v  D +++k +l+
  CDO69557.1 750 APVILAVDTLYIAVGYHLAQCDEQK--PQVCYYSRfgliTLNKRESHVRQPKLELYGLFHTLQATKLYLIGiRNLVVEVDARSIKGMLN 836
                 5899****************55554..4788888877779*******************************999*********998875 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.4e-06     0.019       6      87 ..     206     287 ..     201     290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.4e-06
                      TTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEE..EE.EETTEEEEEEEEEESSSSEEEEH CS
  gag-asp_proteas   6 ngkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsv..kiggielrnvsavvlegelddlLLGl 87 
                      n + v+ +vD G   +++see   +lgl  ++   + ++   ngev  + + +++v  k+ +i+l  ++++v+ +++ dlLLG 
       CDO69557.1 206 NKEYVEGVVDPGCMVITMSEEACHALGLWYDPS-VTLRMVSTNGEVNSSLGLVRNVpfKVADIVLY-LQVHVICNAAYDLLLGR 287
                      6667899*************************6.68999999999988777777653388999997.99999999*******96 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.4e-06      0.03       9      90 .]     209     289 ..     201     289 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds..lklggltlknvpalvldlgeeidglLGmdf 90 
                      v+ ++D G+ ++++s+e+ ++lgl  ++s  t r+ + +gev ++l+ +++  +k+++++l  +  ++ +  +  d+lLG +f
      CDO69557.1 209 YVEGVVDPGCMVITMSEEACHALGLWYDPSV-TLRMVSTNGEVNSSLGLVRNvpFKVADIVLYLQVHVICN--AAYDLLLGRPF 289
                     56789************************95.777777799877766655543399999999755555555..77788888766 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.12      29     116 ..     203     292 ..     196     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
  Asp_protease  29 vevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGvGtkkilGrvhsaevklgdlflpvalsvledkevdlllG..ldll 116
                   +  n+  v+  vd G     +s+++    gl     + ++ +     +++ lG v  +  k++d +l ++++v+ + + dlllG  +d+l
    CDO69557.1 203 LMANKEYVEGVVDPGCMVITMSEEACHALGLWYDPSVTLRMVSTNGEVNSSLGLVRNVPFKVADIVLYLQVHVICNAAYDLLLGrpFDVL 292
                   5679999***************99999988887666667777777778999********************************9444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 5410.32
//
Query:       CDO69558.1  [L=349]
Description: hypothetical protein BN946_scf185038.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-09   37.4   0.0    4.1e-09   36.7   0.0    1.3  1  rve             Integrase core domain
    1.8e-08   34.3   0.0    2.8e-08   33.7   0.0    1.3  1  RT_RNaseH_2     RNase H-like domain found in reverse transcri
    8.4e-08   32.5   0.0    1.3e-07   31.8   0.0    1.3  1  RT_RNaseH       RNase H-like domain found in reverse transcri
     0.0025   17.9   0.3     0.0051   16.9   0.3    1.5  1  Integrase_H2C2  Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   9.1e-13   4.1e-09       7     112 ..     246     346 ..     242     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 9.1e-13
         rve   7 lwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdn 105
                 +w +D ++++    +g   + ++ +  s +     l++e+d ++   + +  ++r g     ++++Dngs++  +a+r++ + ++ ++ +  p++p+ n
  CDO69558.1 246 RWYIDSMKMP--ASNGYRIIVIARCSVSAWPEWRMLRSENDRTLGDFIFQDLICRWGS--LVELVTDNGSAFL-RAVRDLEKCFNLHHINISPYNPKAN 339
                 7999999999..55557999999****************8888888888888888888..78***********.************************* PP

         rve 106 GkvErfh 112
                 G+vE+ h
  CDO69558.1 340 GIVEQSH 346
                 ****988 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   6.2e-12   2.8e-08      10      96 ..       2      93 ..       1      97 [. 0.89

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 6.2e-12
  RT_RNaseH_2 10 eklkealtsapvLahpdpd..kpfiletDaSdtgigavLsqedddgkerpiafaSr....klskaernysttekellAivwalkkfrhyllg.r 96
                 e+lk+al ++p L+  +++  +p+il++D    ++g  L q d+++    ++++Sr    +l+k+e + s+ ++el++++++l+  + yl g r
   CDO69558.1  2 EDLKQALLKSPALRAINYEspAPVILAVDTLYIAVGYHLAQCDEQKP--QVCYYSRfgliTLNKRESHVSQPKLELYGLFHTLQATKLYLIGiR 93
                 78************9998823579********************655..899***988889*****************************9954 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     3e-11   1.3e-07       4     103 ..      23     127 ..      20     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 3e-11
                 S-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEE....E--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--EEEE-SS--TTTTT----...---H CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreedgeerpiafaSr....klsgaernystiekellAivaalkkfrhylqg.rkftvitDhknlkyllskks..lngrl 95 
                  p+il +D   +++g  L q +e++    ++++Sr    +l++ e+  s+ ++el+++ ++l+  + yl g r+  v  D +++k +l++ +   ++ +
  CDO69558.1  23 APVILAVDTLYIAVGYHLAQCDEQK--PQVCYYSRfgliTLNKRESHVSQPKLELYGLFHTLQATKLYLIGiRNLVVEVDARSIKGMLNNPDlaPSASM 119
                 5899****************55554..4788888877779*******************************999**************9888433599* PP

                 HHHHHHC- CS
   RT_RNaseH  96 arWaleLs 103
                 +rW l + 
  CDO69558.1 120 NRWILAIL 127
                 ***98765 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   1.1e-06    0.0051       4      32 ..     200     228 ..     197     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
  Integrase_H2C2   4 slrkeilkeaHdsagHlGiektlerlrrr 32 
                     + r +il++aHd +gH G  +t + +r++
      CDO69558.1 200 ERRLDILRAAHDRLGHHGQYATSQFVRQH 228
                     6799**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2364.63
//
Query:       CDO69559.1  [L=103]
Description: hypothetical protein BN946_scf185038.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 772.31
//
Query:       CDO69560.1  [L=364]
Description: hypothetical protein BN946_scf185038.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2510.66
//
Query:       CDO69561.1  [L=259]
Description: hypothetical protein BN946_scf185038.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1809.59
//
Query:       CDO69562.1  [L=437]
Description: hypothetical protein BN946_scf184759.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.5   2.2        5.9    7.5   0.1    3.8  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.1   1.8e+03      16      30 ..      55      70 ..      55      75 .. 0.86
   2 ?    3.2   0.1     0.007   1.3e+02       3      35 ..      98     126 ..      97     134 .. 0.70
   3 ?    7.5   0.1   0.00033       5.9       1      30 [.     116     153 ..     116     163 .. 0.72
   4 ?   -0.0   0.0     0.074   1.3e+03      13      13 ..     159     159 ..     146     187 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.1
                -S-HHH.-TT--EEE- CS
       LRR_4 16 ipllek.lpnLkeLdL 30
                +p+l+k +p L+eL +
  CDO69562.1 55 LPPLSKrMPFLEELEI 70
                6889999******987 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.007
                 --EEE--SS---.E-S-HHH-TT--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqlt.diplleklpnLkeLdLsgNnl 35 
                 Le+L L +  l+ + p+   l++L++L L  N +
  CDO69562.1  98 LETLRLDGVALSmTSPF---LTSLRHLVL-TN-Y 126
                 66666666555555555...999999999.55.5 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00033
                 SS--EEE--SS-........--.E-S-HHH-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNq........lt.diplleklpnLkeLdL 30 
                 ++L++L L n          +t   + le++pnL+eL +
  CDO69562.1 116 TSLRHLVLTN-YpdvqprllITdFMDALESCPNLEELEI 153
                 5788888886.3355555558844445999*******98 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.074
                 - CS
       LRR_4  13 l 13 
                 +
  CDO69562.1 159 I 159
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3128.61
//
Query:       CDO69563.1  [L=322]
Description: hypothetical protein BN946_scf184759.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0018   18.1   0.0     0.0039   17.1   0.0    1.6  1  F-box-like    F-box-like
     0.0071   16.3   0.0      0.013   15.4   0.0    1.4  1  F-box-like_2  F-box-like domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.3e-07    0.0039       3      38 ..      26      62 ..      24      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.3e-07
  F-box-like  3 rLPdEiLlqIFsyLpps...dLlrlalVCrrWrrvaldt 38
                +LP E+L qIF y  +    + ++++lV+r+ ++v+  +
  CDO69563.1 26 DLPIEVLQQIFAYACTDggyTAYSISLVSRYCQEVV--H 62
                8***********9733334589*********99998..4 PP

>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-06     0.013      20      56 ..      22      59 ..       9      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-06
  F-box-like_2 20 ltllDlPdellelifkg.Ckdpayeplspslakayrrk 56
                  ++++DlP e+l+ if + C d  y++ s sl  +y + 
    CDO69563.1 22 ASVHDLPIEVLQQIFAYaCTDGGYTAYSISLVSRYCQE 59
                  689************977********888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2184.94
//
Query:       CDO69564.1  [L=627]
Description: hypothetical protein BN946_scf184759.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-211  703.5   0.0   1.6e-211  703.3   0.0    1.0  1  DUF2009   Protein of unknown function (DUF2009)


Domain annotation for each model (and alignments):
>> DUF2009  Protein of unknown function (DUF2009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  703.3   0.0  8.8e-216  1.6e-211       1     456 []     166     625 ..     166     625 .. 0.98

  Alignments for each domain:
  == domain 1  score: 703.3 bits;  conditional E-value: 8.8e-216
     DUF2009   1 rakyiplRLteeeRkllrlleaalkvseYtdkvDilsvk.skekriveqlkelcsilsglvvasdlkkgqelleekefaenaeflqkvfEigRRyKiln 98 
                 r+kyiplRLt eeRk+lrlleaal+vseYtdk+D++ +  sk+kriv+q++elc+ilsglv+++d+k+gq+l+++++f++n++f+q++fE+gRR+Ki+n
  CDO69564.1 166 RSKYIPLRLTLEERKYLRLLEAALNVSEYTDKIDTIGFGlSKAKRIVHQIRELCAILSGLVLSADYKHGQALFQDRDFKSNEKFYQDIFELGRRHKIMN 264
                 689***********************************989********************************************************** PP

     DUF2009  99 PekmreeygkliyllqDsvkpevkealefklvkpiktvesvleekealelledklielataeisaekksreeiqkeikekeeaieklakkysskk.lsk 196
                 P+kmr++ygkliy+lqDs++pevk+ l+f++vkpiktv++vlee++al+ll+d+l+++at+ei +e+++r+++q++ik+ke+aie+la+ky+++  ls+
  CDO69564.1 265 PDKMRSTYGKLIYILQDSQTPEVKDLLGFTCVKPIKTVHTVLEEHDALDLLRDDLVSVATKEIYSEGRTRRDVQRDIKAKERAIETLASKYARRGsLSE 363
                 ********************************************************************************************9766*** PP

     DUF2009 197 eeieqvlysiednnafleanrepvekllkllekffepeke.eeklslaikaGkdGarlthdHekqyqyvlqsLtlWkeilkemfklWllaeedllseee 294
                 e+++q+lysi+dn+afl++nr+p+e+++++l+++f+p++  ++k slaik+Gk+GarlthdH+kqy+yvlqsLtlW+eil++mf+lW+lae+dll+e+ 
  CDO69564.1 364 EQVRQCLYSIGDNHAFLRTNRDPCERMIAYLKQYFHPTHPgDSKSSLAIKNGKGGARLTHDHSKQYAYVLQSLTLWREILHDMFHLWTLAEQDLLNENV 462
                 *************************************98725569****************************************************** PP

     DUF2009 295 sYelantgqGlnRvqkapkvskamekilsetqkklgeWvGssvvHlGDrnvPnalvFiDKYtqvprilsPivktleeleklae.dpelkeyieeefgsv 392
                  Y+l++tgqGlnRvq+apk+s++m+ il+++q+++g+WvGssv+H+GD+nvPnal+FiDKY+qv ril Pi++tl ++ +la+ +++l++yi++e+gs 
  CDO69564.1 463 PYRLRDTGQGLNRVQAAPKTSRMMHAILNRAQRSIGSWVGSSVIHMGDHNVPNALMFIDKYSQVYRILLPICNTLAQIPRLAAeNAALRSYIDNEWGSP 561
                 ********************************************************************************9875889************ PP

     DUF2009 393 eelkktiLsdffrhaFdGsGadnffdaGsCiDGrltsawnwcskiekkkyykiflltgftgFdG 456
                 + + + iL+dffrh+FdGsGa n+fdaGsCiDGrltsawnwcs++ekk+++++flltgf+gFdG
  CDO69564.1 562 DGCVREILADFFRHGFDGSGAGNYFDAGSCIDGRLTSAWNWCSTLEKKRFFPVFLLTGFIGFDG 625
                 ***************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 4002.23
//
Query:       CDO69565.1  [L=350]
Description: hypothetical protein BN946_scf184759.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-07   29.7   0.0    6.1e-06   26.7   0.0    2.4  2  PCI             PCI domain
     0.0036   17.4   0.0       0.94    9.7   0.0    2.6  2  HTH_28          Helix-turn-helix domain
     0.0065   16.2   0.0        1.3    9.0   0.0    2.6  2  HTH_23          Homeodomain-like domain
  ------ inclusion threshold ------
       0.12   12.3   0.1         16    5.5   0.0    2.4  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.23     1e+03      68      82 ..     163     177 ..      80     179 .. 0.68
   2 !   26.7   0.0   1.4e-09   6.1e-06       3      83 ..     261     340 ..     259     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.23
                 HHHTSSHHHHHHHHH CS
         PCI  68 klldlsvdevEkilv 82 
                 + l++s+ ev+k+l+
  CDO69565.1 163 EHLGISQTEVDKWLS 177
                 346677788888876 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH..CESEEEHHHHHHHHTSSHHHHHHHHHH CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvsk..iyssislerlaklldlsvdevEkilvk 83 
                 +  ll+++ +  ls++s ++ ++  ++la+ +l     +Le+k+r+ +l ++ +    + i+++ +a++l+++ ++vE+++++
  CDO69565.1 261 LFSLLQIFLNEGLSQYSAWVSSH-TDVLAKYELDS--AQLERKIRLLTLATLGFqnMGRDIPYSAIATALQVDPSQVESWVID 340
                 56799******************.**********9..************9999999999*********************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0064        29      20      37 ..     163     180 ..     162     182 .. 0.93
   2 !    9.7   0.0   0.00021      0.94      13      33 ..     316     338 ..     312     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0064
      HTH_28  20 relgisrrtvyrWikrye 37 
                 ++lgis++ v +W++ +e
  CDO69565.1 163 EHLGISQTEVDKWLSEWE 180
                 79*************998 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00021
      HTH_28  13 h..svreaArelgisrrtvyrWi 33 
                 +  +++++A +l++++++v +W+
  CDO69565.1 316 RdiPYSAIATALQVDPSQVESWV 338
                 44689*****************7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0066        29      25      42 ..     163     180 ..     162     192 .. 0.82
   2 !    9.0   0.0   0.00028       1.3      17      38 ..     317     338 ..     294     339 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0066
      HTH_23  25 reLgvsrrTvyrwlkryr 42 
                 ++Lg+s+  v++wl+ ++
  CDO69565.1 163 EHLGISQTEVDKWLSEWE 180
                 68***************5 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00028
      HTH_23  17 GlsvreIAreLgvsrrTvyrwl 38 
                  +++++IA++L v +++v  w+
  CDO69565.1 317 DIPYSAIATALQVDPSQVESWV 338
                 789****************996 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0035        16      16      36 ..     163     182 ..     163     186 .. 0.77
   2 ?    4.1   0.0    0.0091        41      12      29 ..     321     338 ..     320     342 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0035
  YdaS_antitoxin  16 ealgvsqqaVsqWlkgkkqvp 36 
                     e+lg+sq  V +Wl+ + +++
      CDO69565.1 163 EHLGISQTEVDKWLS-EWEIS 182
                     68***********96.34454 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0091
  YdaS_antitoxin  12 kaLAealgvsqqaVsqWl 29 
                     +a A al v +++V+ W+
      CDO69565.1 321 SAIATALQVDPSQVESWV 338
                     689**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2533.86
//
Query:       CDO69566.1  [L=484]
Description: hypothetical protein BN946_scf184759.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3520.25
//
Query:       CDO69567.1  [L=103]
Description: hypothetical protein BN946_scf184759.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   10.9   8.8       0.22   10.9   8.8    1.1  1  SelP_N    Selenoprotein P, N terminal region
       0.82    9.5   6.2       0.91    9.4   6.2    1.0  1  SPX       SPX domain


Domain annotation for each model (and alignments):
>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   8.8   2.5e-05      0.22     185     205 ..      41      61 ..      11      91 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.5e-05
      SelP_N 185 ehahshkqghkhhekhghhHk 205
                 +++h+h+++h+hh++   +H+
  CDO69567.1  41 DAHHHHHHNHHHHHHLSDPHG 61 
                 222222233333333333443 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.2    0.0001      0.91      92     153 ..      14      84 ..       2     100 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0001
         SPX  92 e...slprrsplsrssrssssygglvssppsansssssddssesnpa......dssssssssesessssss 153
                 e   + +r ++ls+ s++  ++++++ + +++++++++++++ s+p        ++s ++s ++ s+ s+s
  CDO69567.1  14 EasvRITRPRRLSTASSNLDAFSSSSLDAHHHHHHNHHHHHHLSDPHgdpkivLRPSINNSISQLSTLSHS 84 
                 23457788888999999999999999999999999999999999965444444222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 709.39
//
Query:       CDO69568.1  [L=1055]
Description: hypothetical protein BN946_scf184759.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7081.61
//
Query:       CDO69569.1  [L=242]
Description: hypothetical protein BN946_scf184759.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-45  153.1   1.9    4.7e-45  152.7   1.9    1.1  1  ORMDL      ORMDL family
  ------ inclusion threshold ------
      0.053   13.3   0.0      0.085   12.6   0.0    1.3  1  Staygreen  Staygreen protein


Domain annotation for each model (and alignments):
>> ORMDL  ORMDL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   1.9   5.3e-49   4.7e-45       1     136 []      53     195 ..      53     195 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 5.3e-49
       ORMDL   1 nkntewvnskglwviyiviilllkllllalpgvseevawtltnlvhnlvtyillHwikGtPfeta.dqgeydeltlWEQidegeqytptrkfL...... 92 
                 n n+ewvn kg+w+++ v+i++ k++++++pg+ +e++wtl+nl++  ++y+++H+++G Pf++  + g yd+ltlWEQideg+qytp++k++      
  CDO69569.1  53 NVNAEWVNRKGAWLMHPVLIFAGKVVIDTIPGMRQEISWTLVNLLYLGLSYLMFHYVTGIPFHSDlHGGVYDNLTLWEQIDEGAQYTPAKKWFgkltih 151
                 89*************************************************************9999*************************9444444 PP

       ORMDL  93 tvvPivLfllsthytkydlelfvinlivllvvvipKlpfmhrvR 136
                 +++  + fl+sthyt+yd +lf++nl +l++v+ipKlp++hr R
  CDO69569.1 152 CLFNAFSFLASTHYTHYDPWLFAVNLSALIFVLIPKLPAFHRYR 195
                 455667799*********************************98 PP

>> Staygreen  Staygreen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.5e-06     0.085      40      94 ..      36      89 ..      34     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-06
   Staygreen 40 tigekfaldklqkklrDeVlaeWkkdkgelvlhvhvyvsggelllelaaelRyei 94
                +ige+ + + l++++ D+V aeW+++kg   +h  ++   g++ ++ +  +R+ei
  CDO69569.1 36 KIGEESQEETLDQSMYDNVNAEWVNRKGAWLMHPVLIF-AGKVVIDTIPGMRQEI 89
                58999999******************987766655554.5888888899999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1670.57
//
Query:       CDO69570.1  [L=255]
Description: hypothetical protein BN946_scf184759.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-21   76.0   0.0    4.1e-21   75.4   0.0    1.3  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,
    6.1e-11   41.9   0.1    1.4e-10   40.8   0.1    1.5  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,


Domain annotation for each model (and alignments):
>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   4.6e-25   4.1e-21       1     116 []       9     132 ..       9     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 4.6e-25
                  E--HHHHHHHHHHHHHHHHHHHHHHT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT.....--HHHHHHHHHHHHH-TT--EEEE- CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkekgvkpkLavilvgddpasevYvrnkkkaceevGieseliklped.....vseeellklieelneddsvdGilvq 93 
                  ll+++ +a+++r+e+k+ +++  +    pkL++il++++++s+ Y + ++k+c+++G+++ l+k+ +      +  e + ++i e+neddsvdGi+v+
   CDO69570.1   9 LLKADPIANTFRDEIKSALTSSPR---PPKLVGILATNSAPSKFYSEFTRKQCDALGVDFVLRKVGAAadeslAPGEGVEEAIIEANEDDSVDGIMVY 103
                  588999**********99987664...8*************************************65533444455669999**************** PP

                  SS-STTS-HHHHHC......CS-GGGBTT CS
  THF_DHG_CYH  94 lPlpkhidekaile......aispeKDVD 116
                  +P+    +++++++      ++sp KDV+
   CDO69570.1 104 YPIFGAQQDHYLQQvwpiaiIVSPYKDVE 132
                  ***54445666655222222688889997 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1   1.5e-14   1.4e-10      44     157 ..     145     245 ..     141     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.5e-14
                    --TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-.B-GGGS-TT-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTT CS
  THF_DHG_CYH_C  44 rsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpel.ikaemvkegavviDvGinrvekgklvGDvdfeevkevasaitPvpg 138
                    +s++vg+pla+lL++++a V  ++  +  +++ +  +d+vv+av ++e  +k  ++k+g v ++v  ++            ++v+e+as++ P   
     CDO69570.1 145 KSEVVGRPLAALLANDGARVFSVDIDS--IQDCLAISDVVVSAVPNAEYkVKTAWLKDGCVCVNVAADKN----FE-----ADVREKASLYLPT-- 227
                    699********************9988..99***************9966***************99988....33.....45779*****996.. PP

                    SCHHHHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C 139 GVGpmTvamllkntleaak 157
                     +G++T++mll+n+l+  +
     CDO69570.1 228 -IGKVTIMMLLRNLLRLQQ 245
                    .8899*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1725.57
//
Query:       CDO69571.1  [L=330]
Description: hypothetical protein BN946_scf184759.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-20   72.2  10.1     0.0006   20.6   0.0    6.5  5  WD40         WD domain, G-beta repeat
    7.9e-12   45.3   0.0     0.0012   19.1   0.0    3.7  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.053   4.8e+02      12      35 ..      65      93 ..      53      96 .. 0.67
   2 !   20.2   0.0   8.9e-08    0.0008       1      37 [.     100     141 ..     100     142 .. 0.80
   3 !   13.5   0.1   1.2e-05      0.11       5      37 ..     153     185 ..     149     186 .. 0.80
   4 !   12.8   1.2   1.9e-05      0.17       4      37 ..     193     280 ..     190     281 .. 0.85
   5 !   20.6   0.0   6.7e-08    0.0006       2      33 ..     286     318 ..     285     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.053
                S.....EEEEEEETTSSEEEEEETTSEEE CS
        WD40 12 s.....vtslafspdgawlasGsdDgtvr 35
                +     + +l++s  ++ l + + D+ + 
  CDO69571.1 65 NlhkapILDLQWSLASQVLYTVGADHILN 93
                34455699**8887777787666699876 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 8.9e-08
                 TEEEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw........lasGsdDgtvriW 37 
                 gq lr+l +H + ++sl    d ++        +++G dDgt+r+W
  CDO69571.1 100 GQRLRKLHAHrGIINSL----DRTLaggagvelVVTGADDGTIRVW 141
                 5789999***6668***....444477777776889*9******** PP

  == domain 3  score: 13.5 bits;  conditional E-value: 1.2e-05
                 EEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGHssvtslafspdgawlasGsdDgtvriW 37 
                  +++  ++vts+++s dg+ + +G  D+ +++ 
  CDO69571.1 153 SVYEVGCPVTSVCWSADGSSIYAGALDNEIHVI 185
                 55553347****************99**99985 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 1.9e-05
                 EEEEESS.SSEEEEEEETTSSEEEE.....................................................EETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlas.....................................................GsdDgtvriW 37 
                 +++l GH +  tsl+ sp+g++l+s                                                     G+ D+tv iW
  CDO69571.1 193 VYSLMGHtDTPTSLSLSPNGNYLLSpsfssqtiihdvrpfspspnrihrvlmgapagfentllrgawskdddgrrvgvGGADRTVCIW 280
                 67788**5558***********999888899999999999999999999999999999999999999999999999886779999999 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 6.7e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgt 33 
                 + l++l GH + vt+++f+p  + +++Gs+D t
  CDO69571.1 286 KVLYKLPGHkGTVTAVDFHPKEPIILTGSKDAT 318
                 778999***555*****************9976 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00014       1.2      37      84 ..      67     113 ..      45     119 .. 0.87
   2 !   19.1   0.0   1.3e-07    0.0012      29      86 ..     140     205 ..     128     227 .. 0.84
   3 !   12.6   0.0   1.4e-05      0.13      48      89 ..     263     303 ..     238     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  ++  + +L+W+   ++L  + +d  +++ d  +g+ +++l++++   +
   CDO69571.1  67 HKAPILDLQWSLASQVLYTVGADHILNVTDLTTGQRLRKLHAHRG-II 113
                  678899**********************************99987.35 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.3e-07
  ANAPC4_WD40  29 vwtl.........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  vw++         +  + +  v+s++W+ dg+ +  +  d+e++++d  + + v sl  +++ + t+
   CDO69571.1 140 VWEGgdegpknpvSVYEVGCPVTSVCWSADGSSIYAGALDNEIHVIDFRKNEEVYSLMGHTD-TPTS 205
                  555555555555555577999*******************************9999977766.3555 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.4e-05
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                   dg+   v+ +d +v + ++esgkv+ +l+ ++  +vt +++
   CDO69571.1 263 DDGRRVGVGGADRTVCIWEVESGKVLYKLPGHKG-TVTAVDF 303
                  4799**************************9999.5998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2469.28
//
Query:       CDO69572.1  [L=692]
Description: hypothetical protein BN946_scf184759.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-12   45.0   0.0    3.8e-11   42.8   0.0    2.0  2  Arb1         Argonaute siRNA chaperone (ARC) complex subunit 
  ------ inclusion threshold ------
      0.022   15.4   0.2       0.19   12.3   0.1    2.2  2  Pinin_SDK_N  pinin/SDK conserved region


Domain annotation for each model (and alignments):
>> Arb1  Argonaute siRNA chaperone (ARC) complex subunit Arb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   4.2e-15   3.8e-11     127     246 ..     292     419 ..     268     458 .. 0.71
   2 ?   -1.5   0.0      0.12   1.1e+03     372     387 ..     662     677 ..     660     680 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 4.2e-15
        Arb1 127 DFegVakgFLSsklpalvgle.eeqvekaidvirnFlnYllqHdVCPEYeddikaArkvCdkAkeElpkiaallaklPGdFntAcstlfggayk.eyse 223
                 D e  +k FLS ++ +   +  e+  +++  +++ Fln+ll + V PE e+d+++A++ + +A++Elp    +++++P dF++ c  lfg++ + +  +
  CDO69572.1 292 DPETAVKIFLSGYYRDRGMIFsEKFCRDGPILLQFFLNFLLRNRVLPESEKDLRKAVAATGQAQKELPHSFVISRAIPDDFSQGCELLFGTKTHsN-VW 389
                 5577788999999988877766888999999999*********************************************************66641.22 PP

        Arb1 224 eeswaeeeee...........ekglskekakkvf 246
                 + +     +            ++++++  a +v+
  CDO69572.1 390 QVT----DQGpsgdgdepsakRQKVTEPIAPTVL 419
                 222....111222223233333333333333333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.12
        Arb1 372 lkfidevldvlpsfyt 387
                 + ++++vl+vlpsf+ 
  CDO69572.1 662 FWYMEQVLAVLPSFHS 677
                 6699**********97 PP

>> Pinin_SDK_N  pinin/SDK conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.2e-05      0.19      71     127 ..     192     247 ..     172     250 .. 0.89
   2 ?    0.1   0.0      0.13   1.2e+03      70      86 ..     397     414 ..     380     426 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
  Pinin_SDK_N  71 GgdgPpakrrdlggavsrlggerrarresrredsededdlpkkpavqssvvatskek 127
                  G  +Ppa r++  + ++ l+  + a+ + + +d+++e+  p +p  q+ vv t  e+
   CDO69572.1 192 GL-QPPASRKKNAQIRDALAAMGEAPEDDADDDEGEEEMPPTRPPKQAEVVVTNDEN 247
                  44.799999988899999999999*****************************9876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
  Pinin_SDK_N  70 sGg.dgPpakrrdlggav 86 
                  sG  d+P+akr+++ +++
   CDO69572.1 397 SGDgDEPSAKRQKVTEPI 414
                  34349*******998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4718.17
//
Query:       CDO69573.1  [L=490]
Description: hypothetical protein BN946_scf184759.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 2631.36
//
Query:       CDO69574.1  [L=701]
Description: hypothetical protein BN946_scf184759.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-17   63.9   0.0    5.1e-17   62.8   0.0    1.5  1  AAA_16    AAA ATPase domain
    1.9e-16   60.1   0.0    1.8e-10   40.6   0.0    2.4  2  ORC4_C    Origin recognition complex (ORC) subunit 4 C-termin
     0.0006   19.8   0.0      0.004   17.1   0.0    2.1  2  AAA_5     AAA domain (dynein-related subfamily)
     0.0016   18.4   0.0       0.74    9.7   0.0    2.3  2  NACHT     NACHT domain
     0.0022   18.4   0.0        0.2   12.1   0.0    2.4  2  AAA       ATPase family associated with various cellular acti
      0.003   17.1   0.0     0.0051   16.3   0.0    1.3  1  AAA_7     P-loop containing dynein motor region
     0.0036   17.5   0.0     0.0089   16.2   0.0    1.8  1  AAA_33    AAA domain
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.045   13.5   0.0    1.6  1  AAA_29    P-loop containing region of AAA domain
       0.02   15.2   0.0      0.066   13.5   0.0    1.9  2  AAA_22    AAA domain
      0.068   12.6   0.0       0.13   11.6   0.0    1.4  1  TniB      Bacterial TniB protein
       0.13   12.6   0.1       0.37   11.1   0.1    1.7  1  AAA_19    AAA domain
       0.15   11.8   0.0       0.25   11.0   0.0    1.3  1  AAA_24    AAA domain
        1.9    8.6   8.5       0.11   12.4   1.9    2.6  2  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   3.7e-20   5.1e-17      11     164 ..     301     473 ..     298     480 .. 0.73

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 3.7e-20
      AAA_16  11 qLls.alervrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala. 106
                 qL + ++++v +g+++++ll+G+sG+GK+ +v+e+  al +d +i+ l+g ++q+++       ++ +a+ +l +q ++      l+   e  +e  + 
  CDO69574.1 301 QLSDlLIGTVTRGEGNSCLLIGPSGSGKTQIVEEVIAALPGDPIIVrLSGYAQQNDRL-----AIREIAW-QLAQQTGRS----FLPTNEEDEDEDEEd 389
                 564405569*********************************98889********222.....2222223.333333333....233222222222223 PP

      AAA_16 107 .......................avpelagaea..srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                                        +++e  +a++      ++l +l++ +++  rp+v+vlD ++ + ++ +q+ l++Ll+++++
  CDO69574.1 390 apdagpvprptqdaddnpfidpsPAGESGPALSvtLPPPAHLLALISMIPTLPRPTVVVLDGFDLFASHARQAlLYCLLDTAQA 473
                 334556666777888888877665555555555999999*******999999****************999999******9886 PP

>> ORC4_C  Origin recognition complex (ORC) subunit 4 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.1e-07   0.00084       2      65 ..     533     598 ..     532     600 .. 0.80
   2 !   40.6   0.0   1.3e-13   1.8e-10     119     219 .]     598     685 ..     594     685 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.1e-07
      ORC4_C   2 ickelLsl...peeesseeasdsadakfleaWnksieelledsafqellkrlyyltksvrallnsli 65 
                 +++++Ls    p+++++ + +++a +++ + W+k   ++l+++ + e+++++y lt+++++l+++l+
  CDO69574.1 533 LARAVLSApvePSDGQD-DVDKEAMEEWSSIWEKATGQFLANEVVLEAFRETYALTRDYQMLRRILT 598
                 57788877333333333.333444***************************************9987 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 1.3e-13
      ORC4_C 119 iydtdtvNFemaydeYkklakrakvqsssassqssasgalatg..arvWgrdvalkawerLisleLllpagagsssessssgggkefrmvrlevsleei 215
                 ++ +d+++Fem+++ +k+ +++++ +  +     ++ g++  +  +    r+v+  a+erL++l+++lpaga      s+ ++g+ef ++r +v++  +
  CDO69574.1 598 TSGHDVFTFEMLHEAFKNQVRTSQSAPVQ-----IEGGGIGMVrcS----REVLFAAFERLADLRIFLPAGA------SGVTVGREFALYRSAVDRFAV 681
                 7889*******************666433.....444444443433....*******************977......7888***************** PP

      ORC4_C 216 kaav 219
                 k+av
  CDO69574.1 682 KKAV 685
                 9997 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.9e-06     0.004       2      40 ..     318     356 ..     317     377 .. 0.77
   2 ?   -0.3   0.0       0.7   9.7e+02      66     138 .]     444     514 ..     429     514 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.9e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteed 40 
                  lL+Gp+G+gK++++e++ aal     +v l+ + +++d
  CDO69574.1 318 CLLIGPSGSGKTQIVEEVIAALPGDPIIVRLSGYAQQND 356
                 59********************77777776666655555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.7
                 -SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  66 geilvlDEveraesevlnsLlslleerrllleeggelvkakndd.llerfrviatanpldrslnelspalrsRf 138
                 + ++vlD+++   s++ ++Ll  l +     +  g  + a   +  ++ + vi+ + ++d   n l ++++sRf
  CDO69574.1 444 PTVVVLDGFDLFASHARQALLYCLLDTAQA-CRAGPSTAA-TGTsSASGMAVIGVTTRVD-TINLLEKRVKSRF 514
                 678899999988877777776655444333.233333322.2233555588888888888.7888888888887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0067       9.3       3      24 ..     318     339 ..     316     342 .. 0.87
   2 !    9.7   0.0   0.00053      0.74      62     109 ..     424     464 ..     419     491 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0067
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 ++l G++GsGKT  +++++ a+
  CDO69574.1 318 CLLIGPSGSGKTQIVEEVIAAL 339
                 7899*********999998765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00053
                 CTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.........H CS
       NACHT  62 lpepaapvsevwavllelperlLlilDglDelvtdlgqkekqpvrtlL 109
                  ++p a+    ++++ +lp+ ++ +lDg+D ++++ +q        lL
  CDO69574.1 424 TLPPPAHLLALISMIPTLPRPTVVVLDGFDLFASHARQ-------ALL 464
                 567778888899**********************9888.......333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015       0.2       2      26 ..     319     343 ..     318     381 .. 0.78
   2 ?    3.9   0.0     0.049        68      58     125 ..     443     515 ..     425     521 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                 EEESSTTSSHHHHHHHHHHHHTHEE CS
         AAA   2 llyGppGtGKTllakavakelgvef 26 
                 ll+Gp G GKT +++ v+  l  + 
  CDO69574.1 319 LLIGPSGSGKTQIVEEVIAALPGDP 343
                 9****************99984333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.049
                 TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS.............SSTEEEEEEESSGGGSTHHHHS..TTSS CS
         AAA  58 kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk.............eskvivigatnrpdkldpallr..gRfd 125
                 +p+++++D +d +a++            ++ L+  ld  +                s + vig+t+r+d+++    r  +Rf+
  CDO69574.1 443 RPTVVVLDGFDLFASHA----------RQALLYCLLDTAQACragpstaatgtssASGMAVIGVTTRVDTINLLEKRvkSRFS 515
                 57788888888887777..........344455555555444666888888888877799*******8887643332235655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.7e-06    0.0051      32      98 ..     314     379 ..     297     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpg 98 
                 +++++ll+Gp+G+GKt i+++++ +l+  + +++ ++  aq + +   + i  +l +++++ + P +
  CDO69574.1 314 EGNSCLLIGPSGSGKTQIVEEVIAALP-GDPIIVRLSGYAQQNDRLAIREIAWQLAQQTGRSFLPTN 379
                 56789**********************.444445555555555555556677778888888887765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.4e-06    0.0089       3      31 ..     319     351 ..     318     489 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.4e-06
      AAA_33   3 llvGlpGsGKstlaerllkklg....avllssd 31 
                 ll+G++GsGK++ +e+++++l+     v+ls  
  CDO69574.1 319 LLIGPSGSGKTQIVEEVIAALPgdpiIVRLSGY 351
                 789******************999777777755 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05     0.045      23      46 ..     315     339 ..     297     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
      AAA_29  23 g.atlltGpsGsGKSTllDAiqalL 46 
                 g ++ll+GpsGsGK+ ++  ++a L
  CDO69574.1 315 GnSCLLIGPSGSGKTQIVEEVIAAL 339
                 4589***********9998777766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.8e-05     0.066       4      64 ..     314     371 ..     311     390 .. 0.67
   2 ?   -3.6   0.0       9.1   1.3e+04      92     106 ..     444     460 ..     428     476 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsst..sskdllrellral 64 
                 + ++++++G+sG+GKT  ++++   l+        +++++     +  ++      ++++ +l++++
  CDO69574.1 314 EGNSCLLIGPSGSGKTQIVEEVIAALP--------GDPIIvrlsGYAQQN-DrlAIREIAWQLAQQT 371
                 567899****************99997........344333443222222.1245555555555555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.1
      AAA_22  92 ielliiDEaqhlr.s.e 106
                 + ++++D ++ +  +  
  CDO69574.1 444 PTVVVLDGFDLFAsHaR 460
                 57899999998863132 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.7e-05      0.13      19      55 ..     298     335 ..     290     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.7e-05
        TniB  19 ilerLeeLl.eypkrkrmpnlllvGdsnnGKtmivekF 55 
                 + e+L +Ll  + +r + +++ll+G+s  GKt+ive+ 
  CDO69574.1 298 ANEQLSDLLiGTVTRGEGNSCLLIGPSGSGKTQIVEEV 335
                 5567766651456788889****************975 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00027      0.37      10      34 ..     315     339 ..     309     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivall 34 
                  + +l++++ G+GKT+++++++a l
  CDO69574.1 315 GNSCLLIGPSGSGKTQIVEEVIAAL 339
                 56789***************99976 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.25       3      33 ..     316     350 ..     314     388 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
      AAA_24   3 lkiliyGpsgiGKTtlakel....gpkplfidtek 33 
                 +++l++Gpsg+GKT ++ e     + +p+++ + +
  CDO69574.1 316 NSCLLIGPSGSGKTQIVEEViaalPGDPIIVRLSG 350
                 689***************99999888888886655 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.9   8.3e-05      0.11       1      11 [.       3      13 ..       3      15 .. 0.87
   2 ?   -2.0   0.6       3.8   5.3e+03       1       6 [.      73      78 ..      73      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
     AT_hook  1 kRkRGRPrKaa 11
                ++kRGRP+K+ 
  CDO69574.1  3 PKKRGRPKKTV 13
                79*******86 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.8
     AT_hook  1 kRkRGR 6 
                ++kR R
  CDO69574.1 73 PKKRSR 78
                689988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4556.45
//
Query:       CDO69575.1  [L=655]
Description: hypothetical protein BN946_scf184759.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.1    9.6   8.4        0.2   12.0   0.4    3.1  3  TSC22     TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.023   4.2e+02      19      44 ..     161     186 ..     157     197 .. 0.78
   2 ?   -2.9   0.7      0.49   8.9e+03      16      52 ..     214     250 ..     205     255 .. 0.59
   3 ?   12.0   0.4   1.1e-05       0.2      16      53 ..     379     415 ..     376     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.023
       TSC22  19 LkekIkeLeernseleeENslLkala 44 
                  k+kI++L +  ++ +e  ++L a a
  CDO69575.1 161 FKKKIQDLSHACKQWKETSETLEARA 186
                 68999999999999988888886554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.49
       TSC22  16 VevLkekIkeLeernseleeENslLkalaspeqleql 52 
                 Ve+L+   + L ++ +++  + ++  ++a +eq++++
  CDO69575.1 214 VEELRIMLVILKAQEQNVMADLQIQLRQARSEQFAMQ 250
                 6666666666666655555555544445666666655 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 1.1e-05
       TSC22  16 VevLkekIkeLeernseleeENslLkalaspeqleqls 53 
                  e L+ +  eLe+++++l +EN+ ++ l+s++ l++l+
  CDO69575.1 379 SERLQYTNIELEHKITHLSHENAHYR-LISQNLLTELE 415
                 578888889*****************.9****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1772  (0.0988343); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.35s 00:00:01.18 Elapsed: 00:00:00.52
# Mc/sec: 3766.00
//
Query:       CDO69576.1  [L=332]
Description: hypothetical protein BN946_scf184759.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-42  145.7   0.4    1.9e-42  145.0   0.4    1.3  1  adh_short        short chain dehydrogenase
    1.3e-40  139.4   0.2    3.5e-40  138.0   0.2    1.7  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    6.1e-11   42.6   0.6    1.8e-10   41.0   0.1    1.9  2  KR               KR domain
    7.5e-05   23.2   0.6     0.0019   18.8   0.1    2.7  3  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
     0.0022   17.9   0.1     0.0045   16.9   0.1    1.6  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
      0.012   14.9   0.1      0.023   14.0   0.1    1.5  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.024   14.6   0.0      0.042   13.8   0.0    1.4  1  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
      0.024   14.5   0.1       0.06   13.2   0.1    1.6  2  YjeF_N           YjeF-related protein N-terminus
      0.031   13.9   0.0      0.059   13.0   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.035   13.6   0.2      0.091   12.2   0.2    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.036   13.4   0.3       0.06   12.6   0.3    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.038   13.4   0.0       0.06   12.7   0.0    1.3  1  DUF1776          Fungal family of unknown function (DUF1776)
      0.038   14.0   0.0      0.073   13.0   0.0    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
       0.08   12.3   0.0       0.14   11.5   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.4   1.5e-45   1.9e-42       2     193 ..      57     274 ..      56     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 1.5e-45
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S......... CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi......... 87 
                 v +vtG++ GIG+ ia+++a++Ga+v++++r++e le++ak  ++     + +++++++Dvtd++++e lv+++ k+ +++dvLvnNAG+         
  CDO69576.1  57 VCVVTGGGTGIGLMIAQAFANNGARVYITGRRPEVLEQAAKAWGKSllnpRGQIITVPADVTDKKSIEHLVNEVSKNEKHIDVLVNNAGVslgtstvek 155
                 579**************************************999988888999*********************************************8 PP

                 ......S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EE CS
   adh_short  88 ......tgsgpfselseeewervievNltgvflltravlpaml....kqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptg..ir 173
                       + + +  + ++++we v+ +N+ ++f +t+a+lp +     +++ ++++n+sS+ g      +  +Y  sKaa ++l   la+el++ g  +r
  CDO69576.1 156 gdesaqALKDQLWNENQADWETVYRTNVISYFFTTAAFLPLLSaaarDGHTASVINISSMSGiTRTTQHHFMYNVSKAATIQLNTLLAQELRRPGvkVR 254
                 8876532222333445566**********************99999999*************777889999**********************99999* PP

                 EEEEEESSBSSHHHHHHCTH CS
   adh_short 174 vnavaPGlvdTdmakelrek 193
                 vn++aPG++ ++m+  ++++
  CDO69576.1 255 VNSIAPGIFPSEMTVGESDD 274
                 *************9887766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.2   2.7e-43   3.5e-40       4     233 ..      65     327 ..      61     328 .. 0.85

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 2.7e-43
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG............ CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapk............ 82 
                    gIG  iA+a+a++Ga+v +t ++ e  ++++++  ++l +    +  +++DVtd++++e+lv+ev ++ +++D+lvnnag++              
    CDO69576.1  65 TGIGLMIAQAFANNGARVYITGRRPEVlEQAAKAWGKSLLNPrgqIitVPADVTDKKSIEHLVNEVSKNEKHIDVLVNNAGVSLGtstvekgdesaq 161
                   69*************************888888888887533344358**********************************977777777888888 PP

                   .CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC......CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGG..GTEEEEEE CS
  adh_short_C2  83 .lkgpfletsreefdraldvnlyslfllakaalplmkeg......gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgp..kgiRvNav 169
                    lk ++ + ++++++++  +n+ s+f ++ a+lpl+ +       +s++n+ss+++   +++++ +y+++Kaa ++l   lA el +   ++RvN++
    CDO69576.1 162 aLKDQLWNENQADWETVYRTNVISYFFTTAAFLPLLSAAardghtASVINISSMSGITRTTQHHfMYNVSKAATIQLNTLLAQELRRpgVKVRVNSI 258
                   888999999*************************655444556999********99988877777*********************955568***** PP

                   EE--BHCTGGGGSTTHHH.HHHHH......HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 170 spgpikTlaasgikgfde.lleel......earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +pg+   +++ g ++ ++     +      ++ +p gr g+ e++a++al++as+e  y  Gqt+ +DgG+
    CDO69576.1 259 APGIFPSEMTVGESDDKNkSHMDVppdygeKKGIPAGRPGREEDMAQTALYIASNE--YLYGQTITIDGGY 327
                   *********777665333122111222233789*********************98..************9 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   1.4e-13   1.8e-10       4     101 ..      59     156 ..      57     165 .. 0.85
   2 ?   -0.8   0.0      0.96   1.2e+03     119     144 ..     197     222 ..     159     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.4e-13
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..-.-HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaa.dedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tGG  g+Gl +a+  a++gar + +++R++++ ++++ka+ ++l +   ++ +v+aDv+dk+++e+l++e++++e+ i   ++ Agv+  +   e+ 
  CDO69576.1  59 VVTGGGTGIGLMIAQAFANNGAR-VYITGRRPEVlEQAAKAWGKSLLNPRGQIITVPADVTDKKSIEHLVNEVSKNEKHIDVLVNNAGVSLGTSTVEKG 156
                 89*******************97.7899999765155566789999999999************************************97655554444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.96
                 HHHHTTTS--SEEEEEEEHHHHH--T CS
          KR 119 LhelledesldffvlfSSiagllgsa 144
                 L  + +d +   ++ +SS++g++ ++
  CDO69576.1 197 LSAAARDGHTASVINISSMSGITRTT 222
                 45555666666677777777766544 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.4e-06    0.0019       3      50 ..      59     103 ..      58     113 .. 0.84
   2 ?   -1.4   0.0       2.8   3.5e+03      46      69 ..     126     151 ..     109     156 .. 0.69
   3 ?    1.3   0.0       0.4   5.1e+02      40      62 ..     236     258 ..     219     270 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-06
                 EEECSSH.HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHH CS
   Pyr_redox   3 vvvGgGy.iglElAgalaelgkkVtvversdkllrllDeeaskilqekl 50 
                 vv GgG+ igl+ A+a+a+ g++V++  r++++l    e+a+k++ ++l
  CDO69576.1  59 VVTGGGTgIGLMIAQAFANNGARVYITGRRPEVL----EQAAKAWGKSL 103
                 56666644**************************....88888877765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
                 HHHHHHHT..TEEEECSEEEEEEEEE CS
   Pyr_redox  46 lqeklekn..gievllntkveeiegs 69 
                 l ++++kn  +i+vl n+  +++ +s
  CDO69576.1 126 LVNEVSKNekHIDVLVNNAGVSLGTS 151
                 55555555568888888887777655 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHTTEEEECSEE CS
   Pyr_redox  40 eeaskilqeklekngievllntk 62 
                  ++ ++l+++l++ g++v+ n+ 
  CDO69576.1 236 IQLNTLLAQELRRPGVKVRVNSI 258
                 56788999999999999999986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.5e-06    0.0045       4      46 ..      60     103 ..      57     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.5e-06
                 EE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N   4 viGaGt.mGagiaavfasagleVvlvdiseealekalekieksl 46 
                 v G Gt +G  ia++fa++g +V ++ +++e le+a+++  ksl
  CDO69576.1  60 VTGGGTgIGLMIAQAFANNGARVYITGRRPEVLEQAAKAWGKSL 103
                 67888879*****************************9998866 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.8e-05     0.023     145     245 ..      58     154 ..      18     177 .. 0.73
   2 ?   -3.6   0.0       3.9     5e+03     186     204 ..     239     257 ..     227     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                  EEEES-SH.HHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGy.iGvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrps 240
                  +vv GgG  iG+ +A+a+a+ g++v++  +r+++l+   ++++a+ +  l+ +G  +    ++ +++++++ ++ v + +++e   d +v  +Gv+  
   CDO69576.1  58 CVVTGGGTgIGLMIAQAFANNGARVYITGRRPEVLE---QAAKAWGKSLLNPRGQIIT---VPADVTDKKSiEHLVNEVSKNEKHIDVLVNNAGVSLG 149
                  4788888669************************93...4444444444555554444...4444454444333477777777888888888888887 PP

                  -HHCS CS
                  xxxxx RF
  Pyr_redox_2 241 telle 245
                  t+++e
   CDO69576.1 150 TSTVE 154
                  77764 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.9
                  HHHHHHHHHHTTEEEEESC CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 186 saaleealekeGvevklgt 204
                     l+++l++ Gv+v++++
   CDO69576.1 239 NTLLAQELRRPGVKVRVNS 257
                  5566777888888888765 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-05     0.042      37      96 ..      72     134 ..      62     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
  Glyco_tran_WecB  37 leraeeeglrvfllGgkpevlekaaerlreky..pglriagthdgy.keeeeeaiieainask 96 
                       ++ +++g rv++ G +pevle+aa+++ + +  p+ +i ++ +   +++  e++++++++ +
       CDO69576.1  72 AQAFANNGARVYITGRRPEVLEQAAKAWGKSLlnPRGQIITVPADVtDKKSIEHLVNEVSKNE 134
                      44457789********************88854688888888777655677888888876653 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.7e-05      0.06       7     107 ..      37     138 ..      35     166 .. 0.75
   2 ?   -3.2   0.0       5.3   6.7e+03      45      60 ..     242     257 ..     241     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
      YjeF_N   7 nagravaevlrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleekls...... 99 
                 n ++a a++++++l   + e  v+v++G+g   g gl++A+  a++ga+V + + +++e l++ a++  + l + +g++++   +  +++ ++      
  CDO69576.1  37 NMASANAKFATSRL--YNVEGWVCVVTGGG--TGIGLMIAQAFANNGARVYI-TGRRPEVLEQAAKAWGKSLLNPRGQIITVPADVTDKKSIEhlvnev 130
                 56788888888888..35555555555555..479*****************.6777788888888888889999999998777776666666777777 PP

      YjeF_N 100 apvdlviD 107
                 ++ +  iD
  CDO69576.1 131 SKNEKHID 138
                 44444444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.3
      YjeF_N  45 aArhLaqegakVtvll 60 
                 +A++L++ g+kV+v  
  CDO69576.1 242 LAQELRRPGVKVRVNS 257
                 7999999999999944 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.6e-05     0.059       6      72 ..      64     140 ..      58     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
                 -SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH.HHHHCEEEEETTCEEEEEECEEECCH........SCCCCS-ESEE CS
        ApbA   6 aGaiGsllaakLakagadvtlilrsr.rlea.lkknGlrltseggeeilrppealsae........ekselepidlv 72 
                   +iG ++a   a++ga v++ +r++  le+  k  G +l  ++g+ i  p  +++++         +++ ++id++
  CDO69576.1  64 GTGIGLMIAQAFANNGARVYITGRRPeVLEQaAKAWGKSLLNPRGQIITVPADVTDKKsiehlvneVSKNEKHIDVL 140
                 448************************99997888899999999999999999999987888877655566677776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   7.1e-05     0.091       2      86 ..      59     158 ..      58     261 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.1e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHH....HHH.T-SEEEE--S---HHHHHHS CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl............elveldltdrsalerlf....kee.qpdavihlAavggvaassed 83 
                 +VtG+   iG  +++a++++g +v    r+++  ++a++  +              v +d+td++++e l+    k+e ++d+ ++ A+v+    ++e+
  CDO69576.1  59 VVTGGGTGIGLMIAQAFANNGARVYITGRRPEVLEQAAK--AwgksllnprgqiITVPADVTDKKSIEHLVnevsKNEkHIDVLVNNAGVSLGTSTVEK 155
                 79****************************554444333..256899*****99999********6666651111445589999999998776666665 PP

                 HHH CS
   Epimerase  84 pad 86 
                   +
  CDO69576.1 156 GDE 158
                 544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   4.7e-05      0.06      29     101 ..      56     153 ..      29     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.7e-05
                  -EEEEESTSH.HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE.......................HCHHHHHHHHHHHH-SEEEE---B CS
  AlaDh_PNT_C  29 akvlviGgGv.aGlqAiatakglgakVtvlDvrparleqles.lgakfvev.......................lksqeellaeavkeadvvigtvli 101
                     +v GgG+  Gl  +++ ++ ga+V+++  rp++leq  + +g++ ++                        ++++e++++  v++a v  gt  +
   CDO69576.1  56 WVCVVTGGGTgIGLMIAQAFANNGARVYITGRRPEVLEQAAKaWGKSLLNPrgqiitvpadvtdkksiehlvneVSKNEKHIDVLVNNAGVSLGTSTV 153
                  55689999985799999999********************996777766669999999*999999997777777777777777777777777776555 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05      0.06     114     192 ..     173     253 ..     169     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
     DUF1776 114 sswaselnerllspiltlqallplltsrakqkakiivvnpsisssln..lpfhapEalvssalsalfevLkrelrphnidv 192
                 + w+ +  ++++s++ t+ a+lpll ++a++  +  v+n s +s +    ++h +  +   a  +l + L++elr+ +++v
  CDO69576.1 173 ADWETVYRTNVISYFFTTAAFLPLLSAAARDGHTASVINISSMSGITrtTQHHFMYNVSKAATIQLNTLLAQELRRPGVKV 253
                 6799999**********************9999999999988888752245666666666666788889999998544443 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.7e-05     0.073       1      42 [.      66     120 ..      66     155 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEET.............T CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadeviny.............k 42 
                 g+Gl+  q+ +  Ga+v+ + + +e le+a+k  G + ++n+             k
  CDO69576.1  66 GIGLMIAQAFANNGARVYITGRRPEVLEQAAKaWG-KSLLNPrgqiitvpadvtdK 120
                 8**************************99999567.77777744444444333321 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.14       2      75 ..      60     131 ..      59     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75 
                    +TG+   iG  +a+ + ++g +v+++ rr + ++    +++ k    + ++++  + +D+tD++s+e+l++ev 
     CDO69576.1  60 VTGGGTGIGLMIAQAFANNGARVYITGRRPEVLEQ-AAKAWGK-SLLNPRGQIITVPADVTDKKSIEHLVNEVS 131
                    8888777******************9999988763.3444443.44566789*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2142.88
//
Query:       CDO69577.1  [L=742]
Description: hypothetical protein BN946_scf184759.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-40  138.1   0.4    9.2e-37  126.8   0.0    4.5  5  eIF2A     Eukaryotic translation initiation factor eIF2A
      6e-09   35.6   0.0    1.4e-08   34.4   0.0    1.6  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0047   17.8   1.6         51    5.0   0.0    5.8  6  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.12   12.0   0.0        1.8    8.1   0.1    2.3  2  DUF4998   Domain of unknown function
       0.58   10.5  10.0        3.9    7.9   7.7    2.3  2  DBINO     DNA-binding domain


Domain annotation for each model (and alignments):
>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.22   7.8e+02     147     161 ..     192     206 ..     167     214 .. 0.74
   2 ?    3.9   0.0     0.012        42     107     165 ..     195     249 ..     179     254 .. 0.76
   3 ?   -2.2   0.0      0.91   3.3e+03     148     160 ..     304     316 ..     296     327 .. 0.73
   4 ?   -2.5   0.0       1.1     4e+03      55      72 ..     338     354 ..     320     355 .. 0.75
   5 !  126.8   0.0   2.6e-40   9.2e-37       1     193 [.     411     633 ..     411     634 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.22
                 -EEEE-TTSSEEEEE CS
       eIF2A 147 tlvewspdgryvlTa 161
                  ++ wsp g+y++T 
  CDO69577.1 192 LYISWSPMGTYLATL 206
                 467899999999885 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
                 EE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE-TT CS
       eIF2A 107 ffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlTattap 165
                  +sp g++++   +      + +w   + + ++++ ++   l+++sp+ +y++T +  p
  CDO69577.1 195 SWSPMGTYLA--TLHRQ--GVRLWGGPSWEPVQRFAHPLVKLIDFSPNEQYLVTWSYDP 249
                 5666666543..33332..357777778888999999999999*********9987666 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.91
                 EEEE-TTSSEEEE CS
       eIF2A 148 lvewspdgryvlT 160
                  ++wspd+++v+ 
  CDO69577.1 304 ALKWSPDDKFVAR 316
                 5678888888864 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.1
                 CEESSS.EEEEEE-TTSS CS
       eIF2A  55 elkkegpihdvaWspksk 72 
                 ++k eg ++d++W p ++
  CDO69577.1 338 SIKIEG-VIDFEWRPIGD 354
                 455676.89999999876 PP

  == domain 5  score: 126.8 bits;  conditional E-value: 2.6e-40
                 EEESSECEEEEEE-TTTTEEEEEEE.E--TT-CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEES............SSSCEEEE CS
       eIF2A   1 ksffkadkvklkWnkkGtsllvlvstevdktnksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviyG............kmpakvsl 87 
                 k++f+++++kl+W+++G+ l+v+v+ +++kt+ks   + e++++++k+ ++e+velk +  + d++W+pk+++fa+i               +  +vs+
  CDO69577.1 411 KNLFNVTECKLYWQNQGDFLCVKVD-RHTKTKKSIFCNLEIFRVREKDFPVEIVELKDA--VTDFSWEPKGERFALISSndpnlgnpgpgiTIKTEVSF 506
                 89***********************.89****************************888..9***************8533333344455556789*** PP

                 EECS.....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS.-EEEEEETT.TT..............EEEEEEE-TT--EEEE-TTSSEEEEEE-TT CS
       eIF2A  88 fdlk.....vkviskleeqkrNtiffspkgklvllaGfgnla.Geleiwdvk.kk..............kkiakaeaanatlvewspdgryvlTattap 165
                 ++l+      k++++l  +  Nt+ +sp+g+ v+la  g+ +  ele+wd + ++              +++ +a+++  t+ ew+p+gry++T+ +a+
  CDO69577.1 507 YQLDrskgdFKLLKTLAGRTSNTVRWSPRGRHVVLATVGSSSkSELEFWDLDfNMdetrresapwgtgiQHLGTADHYALTDAEWDPSGRYLATSASAW 605
                 **955667799****************************97659*****998754111122222222224578999999******************** PP

                 T-SSS-EEEEEETTTEEEEEEE-TTEEE CS
       eIF2A 166 rlrvdngfkiwsysGklvykkefdelyq 193
                 r+ ++ng+ iw + G+ ++k+  d++ q
  CDO69577.1 606 RHTLENGYAIWDFRGQELEKHILDRFKQ 633
                 ********************99999866 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     4e-12   1.4e-08      26      65 ..      71     111 ..      61     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4e-12
                 EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1  26 ksiklvrd.etgkskgfafVeFeskedAekAlealngkklg 65 
                 ++i+++ d ++gkskg+ f+eF++ +dA++Al+++ng  ++
  CDO69577.1  71 ENITVPWDdAKGKSKGYIFIEFKNADDATRALATMNGHPFD 111
                 799**********************************9886 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.54   1.9e+03      16      32 ..     194     209 ..     176     215 .. 0.77
   2 ?    1.3   0.0      0.21   7.6e+02      16      33 ..     233     250 ..     219     252 .. 0.68
   3 ?    0.0   0.0      0.52   1.9e+03      15      26 ..     304     315 ..     293     327 .. 0.91
   4 ?   -0.1   0.0      0.58   2.1e+03      13      33 ..     469     490 ..     462     491 .. 0.73
   5 ?    1.9   0.0      0.13   4.7e+02      14      38 .]     528     556 ..     516     556 .. 0.70
   6 ?    5.0   0.0     0.014        51      12      28 ..     583     601 ..     572     610 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.54
                 EEEETTSSEEEEEETTS CS
        WD40  16 lafspdgawlasGsdDg 32 
                 +++sp g++la+ +  +
  CDO69577.1 194 ISWSPMGTYLATLH-RQ 209
                 46*******98745.44 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.21
                 EEEETTSSEEEEEETTSE CS
        WD40  16 lafspdgawlasGsdDgt 33 
                 ++fsp+ ++l++ s+D+ 
  CDO69577.1 233 IDFSPNEQYLVTWSYDPI 250
                 67********96255765 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.52
                 EEEEETTSSEEE CS
        WD40  15 slafspdgawla 26 
                 +l++spd +++a
  CDO69577.1 304 ALKWSPDDKFVA 315
                 589******986 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.58
                 EEEEEEETTSSEEE.EEETTSE CS
        WD40  13 vtslafspdgawla.sGsdDgt 33 
                 vt++++ p g  +a  +s D++
  CDO69577.1 469 VTDFSWEPKGERFAlISSNDPN 490
                 9*******99996443455765 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.13
                 EEEEEETTSSEEE...EE.ETTSEEEEEE CS
        WD40  14 tslafspdgawla...sG.sdDgtvriWd 38 
                 + +++sp g+ ++    G s +  + +Wd
  CDO69577.1 528 NTVRWSPRGRHVVlatVGsSSKSELEFWD 556
                 6789*******644343433499999998 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.014
                 S..EEEEEEETTSSEEEEE CS
        WD40  12 s..vtslafspdgawlasG 28 
                 +   t+  ++p+g++la++
  CDO69577.1 583 HyaLTDAEWDPSGRYLATS 601
                 24589999********976 PP

>> DUF4998  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.08   2.9e+02     129     167 ..      69     107 ..      51     138 .. 0.78
   2 ?    8.1   0.1   0.00051       1.8      46      74 ..     415     443 ..     408     470 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.08
     DUF4998 129 ekkeltinwskveqealvkteleYtnkagkektvkikkk 167
                 + +++t++w +++ ++  ++ +e++n +++++     ++
  CDO69577.1  69 KPENITVPWDDAKGKSKGYIFIEFKNADDATRALATMNG 107
                 37899***********999*********99988776665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00051
     DUF4998  46 kitkakifwnnkkdsvevpverkegvdtv 74 
                 ++t++k++w+n+ d++ v+v+r+ ++++ 
  CDO69577.1 415 NVTECKLYWQNQGDFLCVKVDRHTKTKKS 443
                 799*******************9944432 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.061   2.2e+02      50      76 ..     360     387 ..     350     395 .. 0.75
   2 ?    7.9   7.7    0.0011       3.9      29     110 ..     646     727 ..     638     738 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.061
       DBINO  50 askssk.atkdlqlrakrlvremllfwk 76 
                 ++k++k a   + ++ k++  +ml++w 
  CDO69577.1 360 MEKENKpAANGAPAKVKKVRENMLAYWT 387
                 44444414567889*************6 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
       DBINO  29 kkrlanakkvaklcarev.rrkasksskatkdlqlrakrlvremllfwkknekeereerkkaekealekakkeeeereakRqq 110
                 k+++ ++++  k  +r   ++ a+++s ++ +l +  krlv e  ++ ++ + e +eer+k+  +++e akk  ee+e++  +
  CDO69577.1 646 KEQQRQIRRNLKEYSRVFdEEDAAEESNVSAELIAHRKRLVDEWNAWRQRCKEELAEERRKRG-MKAEPAKKAPEEEEQEEIE 727
                 56666777777777777623444555678899************9988887777777666655.4555556655556655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4903.23
//
Query:       CDO69578.1  [L=965]
Description: hypothetical protein BN946_scf184759.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-33  112.5   0.0    7.2e-16   57.8   0.0    4.5  4  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    1.7e-05   24.8   0.0      5e-05   23.3   0.0    1.7  1  RRM_3        RNA binding motif
    0.00048   20.1   0.0     0.0014   18.6   0.0    1.8  2  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
     0.0014   18.7   0.0        0.8    9.9   0.1    3.4  3  RRM_7        RNA recognition motif
  ------ inclusion threshold ------
        7.8    4.6   4.9         12    4.0   4.9    1.1  1  Red1         Rec10 / Red1


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0001      0.37      34      62 ..     268     296 ..     254     299 .. 0.89
   2 !    7.1   0.0    0.0013       4.7       1      21 [.     347     367 ..     347     369 .. 0.95
   3 !   31.3   0.0   3.7e-11   1.3e-07      20      67 ..     382     430 ..     379     433 .. 0.87
   4 !   57.8   0.0     2e-19   7.2e-16       1      70 []     622     686 ..     622     686 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
                 TTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1  34 etgkskgfafVeFeskedAekAlealngk 62 
                 ++ ++ g++f +F+++  A++ l+++n+ 
  CDO69578.1 268 QQANNPGYCFLTFPTQTHAASVLSQVNNS 296
                 678899*******************9985 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0013
                 EEEESETTTSSHHHHHHHHHT CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk 21 
                 +fVg+L+p+v++++L ++F++
  CDO69578.1 347 IFVGDLAPEVSNSDLVAVFRN 367
                 8******************85 PP

  == domain 3  score: 31.3 bits;  conditional E-value: 3.7e-11
                 HTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1  20 skfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggr 67 
                 ++f + ks+k++ d  tg s+g++fV+F+++ d ++Al +++g    +r
  CDO69578.1 382 RPFLSCKSAKIMLDpVTGVSRGYGFVRFTDEADQQRALVEMHGLYCLSR 430
                 5666789************************************776666 PP

  == domain 4  score: 57.8 bits;  conditional E-value: 2e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVg+L+p ++ee+L+++F +fG+i  +k++       k ++fV+F  k dAe+A+e+++g  +gg++++
  CDO69578.1 622 VFVGGLSPLISEETLRTFFAPFGEIHYVKVPVG-----KHCGFVQFVRKPDAERAIEKMQGFPIGGSRIR 686
                 8*******************************7.....****************************9986 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.4e-08     5e-05       4      58 ..     622     676 ..     620     688 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.4e-08
                 EEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHH CS
       RRM_3   4 lklsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkalekat 58 
                 +++ Gl+  +s e+++++++ +ge++yv +  g++ g v+F  + +a++a+ek+ 
  CDO69578.1 622 VFVGGLSPLISEETLRTFFAPFGEIHYVKVPVGKHCGFVQFVRKPDAERAIEKMQ 676
                 6788999999******************************************986 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   4.6e+03      38      53 .]     404     419 ..     400     419 .. 0.88
   2 !   18.6   0.0   3.9e-07    0.0014       1      52 [.     619     671 ..     619     672 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
  Nup35_RRM_2  38 vmyvkfesekdaekAL 53 
                  + +v+f +e d ++AL
   CDO69578.1 404 YGFVRFTDEADQQRAL 419
                  679**********998 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.9e-07
  Nup35_RRM_2   1 stwvaVsGydtelielVle.hFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  +t+v V G ++   e+ l+ +Fa fGeI+   vp +++  +v+f  + dae+A
   CDO69578.1 619 NTTVFVGGLSPLISEETLRtFFAPFGEIHYVKVPVGKHCGFVQFVRKPDAERA 671
                  68999999999988888888********************************9 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.037   1.3e+02      23      72 ..     248     295 ..     233     310 .. 0.72
   2 ?    1.4   0.0       0.1   3.6e+02       4      60 ..     347     412 ..     345     434 .. 0.62
   3 !    9.9   0.1   0.00022       0.8       3      29 ..     621     647 ..     619     669 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.037
       RRM_7  23 kefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleacte 72 
                   + +v++  P+ a  + + ++    + gy fl f +++  +++l++ ++
  CDO69578.1 248 MGWNPVSIKVPRPAPDPITGQQ--ANNPGYCFLTFPTQTHAASVLSQVNN 295
                 4567788888888777666654..3456*******988877777766554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
       RRM_7   4 vFvGGlPiDiteeelkatfke..fgkvlvdwPkkaeskkkaae.......nskaakgyvflvfede 60 
                 +FvG l +++++++l+a f++   g      P+  +   ++++       ++ + +gy f+ f+de
  CDO69578.1 347 IFVGDLAPEVSNSDLVAVFRNpvLGLRNDREPRFIRPFLSCKSakimldpVTGVSRGYGFVRFTDE 412
                 899999999999999999986112322333344433222222233334444455566666666666 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00022
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                  vFvGGl + i+ee l + f  fg++ 
  CDO69578.1 621 TVFVGGLSPLISEETLRTFFAPFGEIH 647
                 69**********************974 PP

>> Red1  Rec10 / Red1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.9    0.0033        12     610     660 ..     496     545 ..     483     550 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0033
        Red1 610 epqptgrsrqidlatfeksttsissptpsilsdkqddltesTlisntsele 660
                 + +p++ s++++ +  ++s++++s+ +ps++s   + +++sTl s tse++
  CDO69578.1 496 SAAPSNSSNSLTSTAVSNSGSASSLSAPSLSS-GTSTTSSSTLASTTSEDA 545
                 567999999***********************.778888999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6317.21
//
Query:       CDO69579.1  [L=2735]
Description: hypothetical protein BN946_scf184759.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-23   81.6   0.0    1.3e-18   67.5   0.0    3.0  2  RasGAP       GTPase-activator protein for Ras-like GTPase
    6.7e-06   26.3   0.1    1.8e-05   25.0   0.1    1.7  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain
     0.0002   21.3   0.1     0.0013   18.7   0.1    2.5  1  MOR2-PAG1_C  Cell morphogenesis C-terminal


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   2.1e-22   1.3e-18       1     208 []    1364    1534 ..    1364    1534 .. 0.92
   2 ?   -2.2   0.0      0.46   2.7e+03     119     166 ..    2604    2652 ..    2603    2653 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.1e-22
      RasGAP    1 liseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkil.ekedlnlelDPrkiyeelkkkkesktgkksessgkksekea 96  
                  l++ +i  E++++++   l+r+ns+ +++l  + +  +g +yL++++ pl++ ++ + +    elDP+++ +e                        
  CDO69579.1 1364 LLKMMIDIEIQKTDSDTALFRGNSTCTRFLSAFARV-YGYNYLRSLIVPLVKLVTtMPPGHGYELDPSRVSRE------------------------ 1435
                  68999*******************************.*****************889999**********988........................ PP

      RasGAP   97 selekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqr 193 
                          +l +n +  + ++ ++l+ I +sl  lP  iR ic  i+++v+e  p+a+    + ++g+f+flrf+ Paiv+P+ +++    ++ + r
  CDO69579.1 1436 --------ELMRNKETVEFITGKFLEIISSSLPILPSIIREICAHIAKSVHEVWPEAK----FAALGAFIFLRFISPAIVTPETVDVP-VPNDVTVR 1519
                  ........2223334456699*********************************9777....***********************999.77799*** PP

      RasGAP  194 rnLtliaKllqnlan 208 
                  r L+ iaK++qnlan
  CDO69579.1 1520 RALMVIAKIIQNLAN 1534
                  *************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.46
      RasGAP  119 eildsIfksl.eqlPvgiRiickqirekvkekfpdaseeeilnligsfl 166 
                  +il +I++ + + +P  i ++   ++  +k +f + +   il+++++++
  CDO69579.1 2604 AILYNILSDVaDAWPEVIGMTYDSLQDRMKDAFANSNNPIILQAVSNIF 2652
                  68889999763667*********************99999999999875 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   2.9e-09   1.8e-05       3     115 ..    1694    1808 ..    1692    1830 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.9e-09
  CRAL_TRIO_2    3 pVfvfi.aafllsskadldkllryvlhtladk.ivgkeyvlVyfhtglssenkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsa 96  
                    Vfv+  +++   +  dl+ ll+y+++ l  +  +g+++++V++ tg++s ++   +w+k + +t+p     ++k + ++ p+tf   +l  +++ 
   CDO69579.1 1694 AVFVLSvSKID-VEVLDLELLLYYIFKCLTSPtNEGRNFEIVLDYTGFTSASQVPAQWVKFAAETIPLDIWTRFKTMRLLAPNTFALRYLRKLYNN 1788
                   67788755555.4556*************766566777***********************************************99999777777 PP

  CRAL_TRIO_2   97 fvsskf.rkkveyvsrleeL 115 
                   +         ++   + ++L
   CDO69579.1 1789 LTTDTTnAVPITIHTSMADL 1808
                   66665544445555555555 PP

>> MOR2-PAG1_C  Cell morphogenesis C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.1e-07    0.0013       2      88 ..    2395    2500 ..    2394    2509 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.1e-07
  MOR2-PAG1_C    2 qlFWttvAcLetdfeseFlealelLeklldkld....lddpevvevllksqpqkwegd....................feglqalvlkGlrssetl 73  
                   qlFW +vA+L++ +   ++ea++lL   ++ +     ++++   ++ll+ + +                         f  l a + kG+r s+  
   CDO69579.1 2395 QLFWLAVALLQSSHMALYVEAIRLLRVTVEVMAshglFRERGLPATLLEGRVP----LediacqldhllglsfesdfsF-SLAATIFKGVRHSALR 2485
                   9*************************999988722223333333333333333....0233345667777777777633.6777777777777777 PP

  MOR2-PAG1_C   74 eatlellskLtklsd 88  
                   +a+   l+ L+k++ 
   CDO69579.1 2486 DAAEGALRSLIKVTA 2500
                   777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.18u 0.35s 00:00:01.52 Elapsed: 00:00:00.52
# Mc/sec: 15691.53
//
Query:       CDO69580.1  [L=345]
Description: hypothetical protein BN946_scf184759.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-23   81.1   4.0    1.4e-22   80.6   4.0    1.2  1  Band_7    SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   4.0   7.8e-27   1.4e-22       2     177 ..      84     253 ..      83     256 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 7.8e-27
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvlesa 100
                 ++++g vg+v rfGk ++ ++pGl  ++   +s+ vv+v++q   + + ++v+t+D++ v id+++++++   + ++++ +     +l++ + + ++ +
  CDO69580.1  84 EVQQGSVGLVSRFGKFYKAVDPGLVQVNVCTESLRVVDVKIQISPIGR-QKVITRDNVDVEIDSVIYFQI-MSPYRAAFGI----SDLRQALIERAQTT 176
                 699*********************************************.*********************.********99....************** PP

      Band_7 101 lrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraeae 177
                 lr+v++ + ++ ++ +re++a e+++ + + ++k+Gv ++++ i+di ++pev ++l +++++ +  + ++  a+ae
  CDO69580.1 177 LRHVVGARMVQSVVTEREAIAFEIAEIVGDVADKWGVAIEGILIKDIIFSPEVSASLSSAAQQKRIGESKVIAARAE 253
                 ***********************************************************999998888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2509.48
//
Query:       CDO69581.1  [L=371]
Description: hypothetical protein BN946_scf184759.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-21   76.7   0.0    6.5e-19   68.3   0.0    2.3  2  Pkinase      Protein kinase domain
    2.3e-07   30.3   0.0    1.4e-06   27.8   0.0    2.0  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0035   17.3   0.0     0.0061   16.5   0.0    1.4  1  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.035   13.7   0.0       0.16   11.6   0.0    2.0  2  FTA2         Kinetochore Sim4 complex subunit FTA2
       0.12   12.4   2.1       0.27   11.3   2.1    1.5  1  P2           P2 response regulator binding domain
        2.5    7.4   4.3        4.2    6.6   4.3    1.3  1  NOA36        NOA36 protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0023       6.9       1      21 [.     160     180 ..     160     186 .. 0.86
   2 !   68.3   0.0   2.2e-22   6.5e-19      26     153 ..     215     354 ..     208     369 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0023
                 EEEEEEEEEESSEEEEEEEET CS
     Pkinase   1 yekleklGeGsfGkVykavek 21 
                 y+ + +lG+G+f+ Vyka++ 
  CDO69581.1 160 YKIIDRLGTGTFSAVYKAIDL 180
                 678899************975 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 2.2e-22
                 EEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEB......HHHHHH........HHSS--HHHHHHHHHHHHH CS
     Pkinase  26 ivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyvegge......ladlle........rkgslseeeakkiakqile 109
                  vA+K+i + +      +++++E+ i++ ++ ++++ +l+ +f+++d+++ ++ y ++++      l + ++          + l+ e +k +++ +++
  CDO69581.1 215 FVAIKRIYVTSGP----ERIRNELMIMEDCRgCRHVSQLITAFRHEDQVVAIMPYHKNDDfrvyaaLSRCIHiayagqqdYFRYLPLEGVKAYFRCMFR 309
                 6888888887555....4789**************************************966544444444466666432223356669********** PP

                 HHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS CS
     Pkinase 110 gleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk 153
                 +l+ +H +giiHrD+Kp+N+L+d ++g+  ++DFGla+    s++
  CDO69581.1 310 ALRDIHIRGIIHRDVKPANFLFDpRTGVGTLCDFGLACVRILSQS 354
                 ***********************9999*********986544444 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.6e-10   1.4e-06       7     152 ..     166     348 ..     160     365 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.6e-10
                  EEEESSEEEEEEEEET..........................TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEE CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkg..........................ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepll 77 
                  lG G+f+ V+++   g                          +   ++v Va+K +  ++     e++ +e+ im+++   +++ +l+ +  +e++++
   CDO69581.1 166 LGTGTFSAVYKAIDLGyhtkwhnaewhgnhppsssayyqsvpHPPGNKVFVAIKRIYVTSG---PERIRNELMIMEDCrGCRHVSQLITAFRHEDQVV 260
                  555555555555433334444455555566666666666666677889999***9944444...569***********99****************** PP

                  EEEE--TTEBHHHHHHHT............CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEE CS
  Pkinase_Tyr  78 ivteyvkgGdLlkfLrkk............ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLard 152
                   ++ y k+ d++ +   +              + l l+ +  +   + ++++ ++ + ++Hrd+   N L + ++ v  ++DfGLa  
   CDO69581.1 261 AIMPYHKNDDFRVYAALSrcihiayagqqdYFRYLPLEGVKAYFRCMFRALRDIHIRGIIHRDVKPANFLFDPRTgVGTLCDFGLACV 348
                  **********9999776677*******887777888899999999999***********************97552779******854 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     2e-06    0.0061     163     198 ..     314     348 ..     240     352 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2e-06
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                    ++++H+D +p N+l+dp+ g   ++ Df++a++
  CDO69581.1 314 IHIRGIIHRDVKPANFLFDPRTGV-GTLCDFGLACV 348
                 45589**************88555.69*****9986 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.44   1.3e+03      19      41 ..     155     177 ..     148     179 .. 0.85
   2 ?   11.6   0.0   5.3e-05      0.16     175     214 ..     301     346 ..     285     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.44
        FTA2  19 saekdiefleyLgkglhsiVlkv 41 
                 +  +d+++++ Lg g+ s V+k+
  CDO69581.1 155 QLMEDYKIIDRLGTGTFSAVYKA 177
                 556799**************997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.3e-05
        FTA2 175 vsqlpkllrdlkklhklgIvvrDlkeenyi......dgkLvDlsaa 214
                  ++++ + r l+++h  gI++rD+k+ n++       g L+D++ a
  CDO69581.1 301 KAYFRCMFRALRDIHIRGIIHRDVKPANFLfdprtgVGTLCDFGLA 346
                 578999**********************985444445889999865 PP

>> P2  P2 response regulator binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.1   9.1e-05      0.27      36      70 ..     113     148 ..     110     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.1e-05
                 ES-HHHHHTT-S.SSEEEEEEEESS-HHHHHHHHHT CS
          P2  36 iPsvedieeekf.degfevvlltkeskeeikealas 70 
                 +P++ed++e+   de+++++l++ e++ ei+e++++
  CDO69581.1 113 EPEEEDVDEGAEtDEELSIYLKSREEQAEIEEEIMD 148
                 7********7777*******************9975 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.3    0.0014       4.2     248     302 ..      73     128 ..      60     133 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0014
       NOA36 248 dddeedsdydaylkalasgddedde.gdedddddddeedddeeeddedeeeeeeee 302
                 d ++++++y+a ++++ +++ e+d  +d   +d++ e+d + ee+d de +e +ee
  CDO69581.1  73 DAQTSAYQYTASTSNMRAKELEEDIfSDGGSEDEEMEQDPEPEEEDVDEGAETDEE 128
                 44567888888888887775555541455555555566666666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2369.71
//
Query:       CDO69582.1  [L=713]
Description: hypothetical protein BN946_scf184759.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   87.2   0.0    3.1e-24   85.9   0.0    1.7  1  UCH       Ubiquitin carboxyl-terminal hydrolase
     0.0011   18.7   0.4     0.0042   16.7   0.4    1.9  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.46   10.6   3.0       0.33   11.1   0.8    1.8  2  CREPT     Cell-cycle alteration and expression-elevated prote


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   5.2e-28   3.1e-24       2     257 .]     115     569 ..     114     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 5.2e-28
                 EES-S.SSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGG.....G CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.....x RF
         UCH   2 GlsNl.GntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell..kskskavsPkklkktlsklaks.....f 92 
                 Gl+N+ G  C+mns+lQ+++s+  l+  l +++ +++                 + ++++l+dl++ l+   s+ +a+ P +++++ls+ ++      f
  CDO69582.1 115 GLVNMsGTYCFMNSTLQAMASLSYLQPQLEEIHARAEAL------------DVPTPVIDSLRDLVRILNtpTSSARAIRPVEIIAALSNHNSGkhtslF 201
                 788863688**************9998888843333322............233459********99999988999**********9988765556679 PP

                 TSSSTCEHHHHHHHHHHHHHHHHCC...HCCCHHH........HHHCCCTTSHHHHHH-EEEEE................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx........xxxxxxxxxxxxxxxxxxxxx................................... RF
         UCH  93 sgykqqDaqEflaflLdqlhedlnr...evaeekw........kkhlkrndslitdlfegqlks................................... 145
                 s+ + qDaqE+++ l + ++++  +   e   ++         k++    ++l +++f g + +                                   
  CDO69582.1 202 SSREHQDAQELFQLLSECIKSEAIAvakE---SRRdrglggltKEDALIVRDLSQTVFDGLTANrrscmecgyteavmhfpfdnwqlavprlvsacrle 297
                 ********************999994432...333344544445555555666666688888779********************************** PP

                 ...........................................................................EEEEEEB-SEEEEEEESEEETEE. CS
                 ...........................................................................xxxxxxxxxxxxxxxxxxxxxxx. RF
         UCH 146 ...........................................................................klklkrlPeiLiihlkRfsynss. 168
                                                                                             +k  +l ++++ hl  ++ + s 
  CDO69582.1 298 ecledytrlellsdcicrkcsmlatykrleqeaeklteaaqatndpssskkkrardarrllarvkaaldegrieeDIKGVKLEKVFSRHLLMMYNTASs 396
                 *********************************************************999999999999999999555556666665555544432223 PP

                 ...............EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B..........................EEEEEEEEEESCTTSEEEEEEEECT CS
                 ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 169 ...............ksKlntkvefpeeldlssylaeekkkkteekkk..........................YeLiavvvHsGslssGHYvayikne 226
                                ++ +n++v fpe ldl++y+++++ + +++ ++                          Y+L avv+H+G++s GHYv++++++
  CDO69582.1 397 cprsppqslnalrqlRHQNNCRVVFPEILDLTPYTTSGQLSTQPSAPIssppppipiqrsitptpstyavprtlYRLAAVVCHYGQHSFGHYVCFRRKP 495
                 44445555667778899*******************999999888888***********************************************9955 PP

                 TTTE.........................................EEEEETTEEEEE-HHCCCTT...CEEEEEE CS
                 xxxx.........................................xxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
         UCH 227 kngk.........................................WykydDetvkevkeeeevls...sayiLfY 257
                 +  +                                         W++++D+tv+e+  e  vl+    a++L+Y
  CDO69582.1 496 RPPSagdrrfappklacplgcdcakcqqfgpirdgdestsrpgrgWLRISDDTVQECGIE-RVLQegsGAFMLYY 569
                 44447889999***********************************************88.77777999999998 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   7.1e-07    0.0042       2     298 ..     115     494 ..     114     507 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.1e-07
                 xxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnh.ivnsYlNslLQvlyfipplr.nlalshlakeckke.hcLlcElgflfdmldkak..glncqasnFlralssipeasalglileeeeetekssa 95 
                 GL n   + +++Ns LQ+++ +  l+ +l   h+  e  +    ++  l  l++ l++     + ++  +   als++ + +   l+ ++e++      
  CDO69582.1 115 GLVNMsGTYCFMNSTLQAMASLSYLQpQLEEIHARAEALDVpTPVIDSLRDLVRILNTPTssARAIRPVEIIAALSNHNSGKHTSLFSSREHQ------ 207
                 6777767889****************9999999988666542678888999999998876324599*************99999999554333...... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
       UCH_1  96 islssliqsfnrflldqlekelketkkns................seeesaieqllgtkaettirclkCgseksrksstlvl.dlkyPkpsnekkeakv 177
                  +     q++ + l +++++e+    k+s                    +  ++++   + ++ +c++Cg ++   +  + + +l  P+       +  
  CDO69582.1 208 -D----AQELFQLLSECIKSEAIAVAKESrrdrglggltkedaliV--RDLSQTVFDGLTANRRSCMECGYTEAVMHFPFDNwQLAVPRL-----VSAC 294
                 .2....3455556666666665555555556669999987777432..34446688999999********99955555555437766732.....2347 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx................................... RF
       UCH_1 178 tfasilksslerekttrawCekCkryqpteqrktvknlPpvLalnakleee.....eelelwkt................................... 236
                 +++++l+     e  +  +C+kC+   ++ + k++++  + L+  a+ +++     +  +   +                                   
  CDO69582.1 295 RLEECLEDYTRLELLSDCICRKCS---MLATYKRLEQEAEKLTEAAQATNDpssskK--K---Rardarrllarvkaaldegrieedikgvklekvfsr 385
                 889999999999888899999996...455666666666666666666666332221..2...133455666668888888888888888888777777 PP

                 ................................xxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxx RF
       UCH_1 237 ................................knwlpleiklsldedknl................................eeklkeerekakaekei 271
                                                 +                +                                  ++  ++++++     
  CDO69582.1 386 hllmmyntasscprsppqslnalrqlrhqnncR----------------VvfpeildltpyttsgqlstqpsapissppppiPIQRSITPTPSTYAVPR 468
                 777777777777777666666666666666652................04444444444444445678899999999999966666677777999999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 272 kvYeLqsvvvhigdskesghLvslvkv 298
                 + Y L +vv+h g+++  gh+v++ + 
  CDO69582.1 469 TLYRLAAVVCHYGQHS-FGHYVCFRRK 494
                 *************666.9*****9874 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.92   5.5e+03      10      57 ..     170     220 ..     161     222 .. 0.63
   2 ?   11.1   0.8   5.5e-05      0.33      28     108 ..     288     367 ..     285     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.92
       CREPT  10 LensassdaavR..eriaklPpevs.dvsllekikdkeeaekllkqveeal 57 
                 L+++ ss +a+R  e ia+l ++ s +   l + +++++a++l++  +e++
  CDO69582.1 170 LNTPTSSARAIRpvEIIAALSNHNSgKHTSLFSSREHQDAQELFQLLSECI 220
                 455566666666445677776654425556667778888888888887775 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.5e-05
       CREPT  28 PpevsdvsllekikdkeeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklek 108
                 P  vs  +l e ++d    e l++ +   +++la Y krLe+e e+ ++ a+  +d  +++k+++++a++ l+++k  l++
  CDO69582.1 288 PRLVSACRLEECLEDYTRLELLSDCICRKCSMLATY-KRLEQEAEKLTEAAQATNDPSSSKKKRARDARRLLARVKAALDE 367
                 7778888888999***********************.7***********************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 4462.70
//
Query:       CDO69583.1  [L=549]
Description: hypothetical protein BN946_scf184759.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-12   45.4   0.0    1.2e-05   25.5   0.0    2.8  3  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.7e-07    0.0066       9     105 ..      34     139 ..      29     144 .. 0.81
   2 ?   -2.2   0.0      0.27   4.8e+03      65     104 ..     166     202 ..     163     206 .. 0.71
   3 !   25.5   0.0   6.7e-10   1.2e-05      10     110 ..     256     370 ..     250     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.7e-07
                 TTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.........TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-H CS
         BTB   9 elcDvtlvvgdgkefkahkavLaarSpyFkalftsk.........eieessvseielddvepeafealLefiYtgeleit.seenleelLaaadllqip 97 
                 +  D++l+  d+  f + + +La +S +F+++++           ++++++  +i+l+  +++++++lL+ +Y+   +   + ++l  +L+aa ++ ++
  CDO69583.1  34 AAADAILRSSDNVDFWVRRSILAEASCIFEDMLSIPqppphalddHDTKDGLPVIRLT-EDSHTLDRLLRLCYPIDDPDFnTLDELRPVLHAAIKYMME 131
                 57899*****************************999999977664455555577754.58899*********8543333578999**********999 PP

                 HHHHHHHH CS
         BTB  98 rlkkacee 105
                 + + ++ +
  CDO69583.1 132 EATSLLRN 139
                 98877665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  65 ealLefiYtgeleitseenleelLaaadllqiprlkkace 104
                 e+l+  +Yt+++ +   ++l++ ++a  ++++ + +++c+
  CDO69583.1 166 ESLVPLAYTAHCAFV--DELKD-ISAGVYYRVSHYMAKCT 202
                 667777888888775..44444.57788999999999887 PP

  == domain 3  score: 25.5 bits;  conditional E-value: 6.7e-10
                 TS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.............TTTTCCCE.....EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHH CS
         BTB  10 lcDvtlvvgdgkefkahkavLaarSpyFkalftsk.............eieessvs.....eielddvepeafealLefiYtgeleit.seenleelLa 89 
                   Dv++++ d+  f+ h a L+ +Sp+ ++++ +              +      +      i   + +++++++lL+ +Y+   +++ s + l++lL 
  CDO69583.1 256 TADVIFRTSDAVDFRLHSALLSLASPVWRRMLDERltsrppspgvkgsT-G----NgtacyGIVFVQEDSTTLASLLRHVYPLPRPSPpSFSALKSLLI 349
                 68*********************************99999999776531.2....133457888899999************999999999******** PP

                 HHHHHT-HHHHHHHHHHHHHH CS
         BTB  90 aadllqiprlkkaceeflkqs 110
                 +a+++++ +l + + + l+++
  CDO69583.1 350 VAHKYELTSLLTFLRSALQTH 370
                 ************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3967.02
//
Query:       CDO69584.1  [L=352]
Description: hypothetical protein BN946_scf184759.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.36   10.4   4.1          1    9.0   4.1    1.8  1  BRD4_CDT  C-terminal domain of bromodomain protein 4


Domain annotation for each model (and alignments):
>> BRD4_CDT  C-terminal domain of bromodomain protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.1   5.9e-05         1       4      28 ..     196     220 ..     193     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 5.9e-05
    BRD4_CDT   4 dqqRelaRkrEqeRRrreamagtID 28 
                 +++Re+  ++Eq  R ++a ++tID
  CDO69584.1 196 RKERETKKRMEQGTRLSRARESTID 220
                 69**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2762.94
//
Query:       CDO69585.1  [L=521]
Description: hypothetical protein BN946_scf184759.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-106  355.6   0.0   3.9e-106  355.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.3   0.0  2.2e-110  3.9e-106      14     451 ..      41     492 ..      30     504 .. 0.93

  Alignments for each domain:
  == domain 1  score: 355.3 bits;  conditional E-value: 2.2e-110
                 TT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH.HTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSE CS
      Aldedh  14 Pa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlle.erkeelaeletletGkplaeara.eveeaidvlryyaelaekleg 109
                 Pa + + ++++++a++++v +a++ A +a+ +w+++p+++Ra+i+ kaadl+  + + +l+++ +l +Gk+ ++a+    +e  d++r+ ++++e+l+ 
  CDO69585.1  41 PAtHAKHLCTYHEADQATVASAIKGALAAKAEWEAMPWNDRAAIFLKAADLVSgKYRYKLMAATMLGQGKNAWQAEIdAAAELSDFFRFGVKYVEELYS 139
                 6656789*********************************************978899*******************7777***************888 PP

                 .EEEEECTTEEEEEEEEE-.SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTE CS
      Aldedh 110 .evlpssegklalvrrePl.GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpev 206
                  + l++++g+ + + ++Pl G+v+a++P+Nf ++       pal+ GN+v++KP++ ++ s +l+ +++eeaglP+gv+++v+g+ +ev  + ++hpe+
  CDO69585.1 140 qQPLKNAPGAWNRIEYRPLeGFVLAVSPFNFTAIGGNLPGTPALV-GNVVLWKPSPAATYSNYLVYKILEEAGLPAGVIQFVPGPPEEVVGQAISHPEF 237
                 4556777*************************************9.***************************************************** PP

                 SEEEEES-HHHHHHHHHHHHCTT......SEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHH.HHHHHHHHHHT--B CS
      Aldedh 207 dkvsftGstevgrkiakaaaknl......krvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiyde.fveklveaakklkv 298
                 + ++ftGst v +k+ k  a+nl       r++ E+GGkn ++++++a++++av++ v+gaf ++GQ+C+a srl+v  s++++ f ++l+ +++klkv
  CDO69585.1 238 ASLHFTGSTLVFKKLWKDIAANLdkyrsyPRIVGETGGKNFHLIHPSAEIKNAVNQSVRGAFEYQGQKCSALSRLYVAASVWNNgFKDQLLTEVAKLKV 336
                 ******************776643444449*****************************************************99************** PP

                 S-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SHHHHHHHHH.SSS CS
      Aldedh 299 gdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..deeeaieiaN.dte 394
                 g p d ++ vGP+i + +++k+++y+++ake+g ++l+Gg    a+++ gyfv+Ptv+   +p++  + eEiFGPVl+v+ ++  d e+ +++   +t 
  CDO69585.1 337 GPPTDFTNFVGPVIGRPAFDKITGYIKQAKEAGGEILVGG---GADDSVGYFVQPTVILTKDPKSVTMVEEIFGPVLTVYVYDdaDYEKTLDLIDtSTA 432
                 ****************************************...899*************************************5557888888763689 PP

                 EESEEEEE-SBHHHHHHHHHHS..-SSEEEESSSST--TTT.SEB--CGGGEES-BSHHH CS
      Aldedh 395 yGLaagvftkdleraervaerl..eaGnvyiNdsttgaaea.lpfgGvkqSglGreggke 451
                 y+L++++f++d + ++++++rl   aGnvy N+++tga+   +pfgG ++Sg+++++g+ 
  CDO69585.1 433 YALTGSIFASDRKALLHATNRLrnAAGNVYYNEKCTGAVVGqQPFGGARASGTNDKAGSI 492
                 **********************777*****************************888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3687.05
//
Query:       CDO69586.1  [L=656]
Description: hypothetical protein BN946_scf184759.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-39  134.4   0.0    5.8e-39  133.9   0.0    1.2  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    6.6e-16   57.9   0.0    1.3e-15   56.9   0.0    1.5  1  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
    2.8e-09   37.2   0.0    4.9e-09   36.4   0.0    1.4  1  BTB            BTB/POZ domain


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   9.7e-43   5.8e-39       2     157 ..       3     170 ..       2     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 9.7e-43
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgkts........ageqekkggesiraipdEitsklkh.kr 88 
                    v +ets +G+ivi+L ++ +Pkt+ nFlkl+k  +Y+  +F+ v k+f++q Gdpt++++         ++  +kg++ +r++  E++++lkh +r
     CDO69586.1   3 VLFETS-LGDIVIDLETELCPKTCLNFLKLCKVYYYNLNAFFNVSKDFLAQVGDPTATGTggeciwslIAS--QKGETAQRYFTPEFNPRLKHkER 95 
                    5689*6.**************************************************99988999865232..34444558999****99999899 PP

  Pro_isomerase  89 Galamartg....kepnsagsqFfItlkeap.hldgkytvFGkVveGmdvvekiekvetde.erpkknvkivsae 157
                    G+++ma +     +++   gsqFfItl+e+  +ldgk++vFG+VveG+d+++k+++v +d+  rp k+v+i+++e
     CDO69586.1  96 GTVSMAVAPaigeEHKGGCGSQFFITLGENIeYLDGKHAVFGHVVEGFDTLDKLNEVFVDQdGRPLKDVRIRHVE 170
                    ******9877876666667********87644************************9888889*********987 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   2.2e-19   1.3e-15       1      69 [.     248     317 ..     248     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.2e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfV  L+p + +e+L+ +Fs fG i s++++rd +tg s  +af+eF+++edAe+A  ++++  +++r++
  CDO69586.1 248 LFVCKLNPVTRDEDLELIFSRFGTIISCQVIRDkKTGDSLQYAFIEFDKREDAEQAYFKMQNVLVDDRRI 317
                 7999***********************************************************9999987 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   8.2e-13   4.9e-09      11     105 ..     392     490 ..     384     495 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 8.2e-13
                 S-EEEEETT.TEEEEE-HHHHHHH-HHHHHHHTST.TTTTCCCE.EEEETTSGH.HHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  11 cDvtlvvgd.gkefkahkavLaarSpyFkalftsk.eieessvs.eielddvep.eafealLefiYtgeleit.seenleelLaaadllqiprlkkace 104
                  D  l++      f++h++vL+ +Sp+F+ +++   +++++++   i ++  ep +++e++L+f+Y+ e ++  s ++l+ +L+aa+++++ + ++ + 
  CDO69586.1 392 HDEKLMCSPqSVDFRVHRCVLSTASPVFEGMLSLPqPSSDRDTIiPI-IPLPEPhTVLEMVLRFVYPLEDPVItSLDQLVPVLEAARKYDFTAAVERLR 489
                 5667777766789********************99533333333223.344444279*********8554333479***************99988776 PP

                 H CS
         BTB 105 e 105
                 +
  CDO69586.1 490 R 490
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4230.67
//
Query:       CDO69587.1  [L=516]
Description: hypothetical protein BN946_scf184759.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3383.54
//
Query:       CDO69588.1  [L=334]
Description: hypothetical protein BN946_scf184759.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-18   65.7   3.2      4e-18   65.7   3.2    2.1  2  RRP7         Ribosomal RNA-processing protein 7 (RRP7) C-term
    1.6e-09   37.8   0.0    4.7e-09   36.2   0.0    1.9  1  RRM_Rrp7     Rrp7 RRM-like N-terminal domain
    4.9e-06   26.3   0.0    0.00016   21.4   0.0    2.5  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 


Domain annotation for each model (and alignments):
>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.6      0.38   2.3e+03      55      65 ..     134     144 ..     104     156 .. 0.53
   2 !   65.7   3.2   6.6e-22     4e-18       3      91 ..     222     325 ..     220     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.38
        RRP7  55 akeeaaeekak 65 
                 +++e +ee+a+
  CDO69588.1 134 SQDEGDEEDAD 144
                 23333344444 PP

  == domain 2  score: 65.7 bits;  conditional E-value: 6.6e-22
        RRP7   3 srpseeelqeevdeymeefdkeeeeekkeekkk..eeevDeDGfvtVtr.........gk..kaaa..keeaaeekakkkekkkkkkkelldFYrFQir 86 
                  rp+ + +++++d++me+f+ e++++++e+k    e+ vDeDGf++Vtr         g+  +a++  +ee+a +++k+++k kk+kke+  FY FQi 
  CDO69588.1 222 LRPPLDIVRAHADSWMEAFEFEQAKKRQESKYHkgEAIVDEDGFTLVTRggaygktlgGGigVASKrfQEEQAGTASKRRRKDKKEKKEKEAFYAFQIH 320
                 6899999***************9999888886656899***********9999888873333444456666777888888888888888889******* PP

        RRP7  87 ekkke 91 
                 ekk++
  CDO69588.1 321 EKKRK 325
                 ***97 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   7.9e-13   4.7e-09       2     161 ..      26     218 ..      25     219 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 7.9e-13
    RRM_Rrp7   2 ikGFlvlPlkLpkskklknkatHYlylkkHqtknndee............ssrslFlvNlPiettletlkkffqkv..........algatiesvvssl 78 
                 ++GF+vlP++  +s      +tH ly + H+  ++ ++            ++r+lFlvN+P  +t  +l+  f+                         
  CDO69588.1  26 VSGFTVLPITYSAS------TTHVLYARAHSVPKHRDAkgkqkektislpEGRTLFLVNIPPDATERELTMLFKSCgtvervvfstG---------RGG 109
                 79********9999......89999999987433332235556689*9*99**********************99854344333320.........222 PP

    RRM_Rrp7  79 ltdeqedvsidltkltsdlel...kdeekdeeeakl.............................PkntglvkfvDkssvelafnalkKlsksstkkeW 145
                 + +++e+ + d  +  s+ e    +++e dee+a                                 +t+ v+f+D ss+e a++  +K         W
  CDO69588.1 110 ASQSEEILENDEESEESEAEGaagSQDEGDEEDADSrpkkkrkvaqpegpqvvplpspslrtlrrTGHTAYVVFLDASSLERALKPPQKP------YPW 202
                 33333333333333333333333322222222222245558999********************999**************998876554......459 PP

    RRM_Rrp7 146 eldkkeplgsqrflnk 161
                 ++dk++plg++++   
  CDO69588.1 203 PVDKETPLGLAHYAAL 218
                 9999999998888765 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.7e-08   0.00016       1      33 [.      74     106 ..      74     113 .. 0.88
   2 ?    2.0   0.0      0.03   1.8e+02      37      57 ..     174     194 ..     167     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.7e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd 33 
                 lf+ n+ppd+te+eL +lF+ +G ++++  ++ 
  CDO69588.1  74 LFLVNIPPDATERELTMLFKSCGTVERVVFSTG 106
                 7899***********************998876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.03
                 SEEEEEEEEESSHHHHHHHHH CS
       RRM_1  37 kskgfafVeFeskedAekAle 57 
                 ++  +a+V F + ++ e+Al+
  CDO69588.1 174 RTGHTAYVVFLDASSLERALK 194
                 56678**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2411.98
//
Query:       CDO69589.1  [L=287]
Description: hypothetical protein BN946_scf184759.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.064   12.7   1.0      0.089   12.2   1.0    1.2  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0     5e-06     0.089     136     208 ..     122     188 ..      84     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5e-06
                     HHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Ribonuc_red_sm 136 wyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrDeglHtdfagllfkelkee 208
                     w +    ++k+++ lv+f +le   f+ + a+i  +k +  ++  +  ++ i+rD     +f + lf++l++ 
      CDO69589.1 122 WGR----RKKMLTLLVIFLILECAIFFLTMASIRQYKVHRQFKEQSALVQVICRDAIA--YFLVTLFSNLFNI 188
                     322....2578999*****************************************875..6788888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2013.05
//
Query:       CDO69590.1  [L=249]
Description: hypothetical protein BN946_scf184759.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1819.50
//
Query:       CDO69591.1  [L=611]
Description: hypothetical protein BN946_scf184759.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-37  127.2   0.0    1.2e-36  126.1   0.0    1.6  1  Pro-kuma_activ  Pro-kumamolisin, activation domain


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   6.7e-41   1.2e-36       2     142 .]      37     179 ..      36     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 6.7e-41
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasr..hsdtkgwiafsatv 94 
                     gwtk  +a++++ +++ri+L+q + ++le++l +vsdp   +yg+hl++eev++l+ap++e+i+ V +wL s+g+  ++  +s+ k+w+ ++++v
      CDO69591.1  37 GWTKSAPAPADHIIELRIALPQPKFSELEQHLYEVSDPFGTRYGQHLSKEEVESLIAPEPESIHLVNEWLASHGLIEENlsRSPAKDWVIVKVPV 131
                     8*************************************************************************99998899************* PP

  Pro-kuma_activ  95 aqverllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     + +e++lkt+++ ++h+ ++  ++r++ ys+Pe+l ++v++i+pt++f
      CDO69591.1 132 SLAEEMLKTEYHVWTHDASGDAVVRTTAYSIPEHLDDHVELIQPTTSF 179
                     **********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3880.71
//
Query:       CDO69592.1  [L=181]
Description: hypothetical protein BN946_scf184759.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                       88  (0.00490825); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 997.00
//
Query:       CDO69593.1  [L=333]
Description: hypothetical protein BN946_scf184759.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-22   78.8   0.3    2.9e-19   69.7   0.3    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.3e-18   68.5   0.8    1.8e-18   67.9   0.8    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.8e-16   60.2   0.0    4.3e-16   58.9   0.0    1.6  1  Hydrolase_4    Serine aminopeptidase, S33
      7e-06   25.9   0.1      0.047   13.5   0.0    2.9  2  Abhydrolase_5  Alpha/beta hydrolase family
    6.1e-05   23.1   0.0    9.9e-05   22.4   0.0    1.3  1  Abhydrolase_4  TAP-like protein
    8.1e-05   22.3   0.2      0.012   15.2   0.5    2.7  2  DLH            Dienelactone hydrolase family
     0.0015   18.1   0.0     0.0034   16.9   0.0    1.5  2  Lipase_2       Lipase (class 2)
     0.0026   16.9   0.2        1.7    7.7   0.0    2.1  2  DUF2048        Abhydrolase domain containing 18
     0.0046   16.8   0.0     0.0087   15.9   0.0    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.049   12.3   0.0       0.12   11.1   0.0    1.5  2  Ndr            Ndr family
      0.053   13.4   0.0       0.62   10.0   0.1    2.0  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
      0.086   11.6   0.2       0.13   11.0   0.2    1.2  1  Peptidase_S28  Serine carboxypeptidase S28
        0.2   11.6   0.0        8.3    6.3   0.0    2.1  2  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.3   2.1e-22   2.9e-19       2     255 ..      83     318 ..      82     320 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 2.1e-22
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                     +v++hGl   + +w    +ap La +gf+v+l+Dl G gyS+++ ++   d ++  +   l  +l+  g+ k+++vG SmGG ia+a+ a++p+ 
     CDO69593.1  83 RVVLIHGLSVPAIIWKD--VAPKLAANGFRVLLYDLYGRGYSDAPQTT--YDANL--YTTQLALLLQYVGWNKVNVVGVSMGGGIAAAFSAQFPHL 172
                    59********9999999..***************************98..55555..56677788******************************9 PP

                    E.EEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH......HCHHHCCHHHHHHHCHHHHHHHH CS
  Abhydrolase_1  98 V.kalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf......pdkskrfpssgsdnasslatgal 186
                    + +++vl+++              ++   d+ +++     +  + ++ + + ++++q+++ ++a  +      + +s  +p  ++++ass   g l
     CDO69593.1 173 ItDKVVLIAS------------AGLMESSDMSRTTKFLSSPLMQVVSCSYPFRLYLQYLADQKASGNpigdlvRFQSAHLPGYNPAIASSIREGPL 256
                    9668999999............55555555555555555555555555555555555544444442233333366666777777777777777888 PP

                    HHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 187 ksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                     s+ +  + + +++    +        +l+i+gtsD++vp ++ ++ ++l+p+++lv+i+++ H++ + 
     CDO69593.1 257 RSLAPQFAALGRHSRKTNG-------SVLLIWGTSDQVVPFRYASRVQSLIPHAELVTIEGGPHDITIS 318
                    8877777777777776655.......6*************************************98765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.8   1.3e-21   1.8e-18       1     220 []      84     326 ..      84     326 .. 0.59

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.3e-21
                    EEEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHH..CHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.vhvlapDlpGhGrsdpppldled..ladlaalldelaa..gggpvvlvGHSlGGalalaaapla....l 87 
                    v+l+HG++ +a +W    +a++laa  ++vl +Dl G G sd p +++++  +     +l+ l +  g ++v +vG S+GG +a+a+ ++      
     CDO69593.1  84 VVLIHGLSVPAIIWK--DVAPKLAANgFRVLLYDLYGRGYSDAPQTTYDAnlY---TTQLALLLQyvGWNKVNVVGVSMGGGIAAAFSAQFphliT 174
                    8*****9999****8..7766666666999******************88443...444444444447************9999995555566543 PP

                    .EE.EEES-......----TTT.........S----TTHHHHHHTT-C.CCCHCCH............S-HSCCCCHHH..CCCCHCHCCCGHHHH CS
  Abhydrolase_6  88 vvg.vlldp....pptalpagl.........laaalelllallallrl.lawlsre............plprlfladed..adaawrarlarlaal 154
                    + + vl+++                      l+ +l ++     ++rl l++l+              + + ++ + ++  a  +   +l+ la++
     CDO69593.1 175 D-KvVLIASaglmE-------SsdmsrttkfLSSPLMQVVSCSYPFRLyLQYLADQkasgnpigdlvrFQSAHLPGYNPaiASSIREGPLRSLAPQ 262
                    3.259999933320.......223333322222222222222223333333332112233333322221112333333312235566666666666 PP

                    CCHHCHTTCCHHTT-TTGCEEECTT-CHHHHCHHCCCH....STTEEETCE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 155 laglgllpaaawadlpvpllvlggeDplvprllerlla....qagarlpvvlpgaGHlphleepdevaea 220
                    +a+lg  ++++ +   v+l ++g++D++vp  ++ + +    +++a+l v+++g+ H + ++++dev +a
     CDO69593.1 263 FAALG--RHSRKTNGSVLL-IWGTSDQVVP--FRYASRvqslIPHAEL-VTIEGGPHDITISHADEVSRA 326
                    66666..322444444444.767****999..44333333588*****.************999**9875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   3.1e-19   4.3e-16       5     235 ..      82     316 ..      78     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 3.1e-19
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                  + vvl+HGl   +   +++a +Laa+Gf v+ +D  G G s+  +    + + y++ la +++ v       ++ ++G SmGG ia+++ ++ p+ ++
   CDO69593.1  82 KRVVLIHGLSVPAIIWKDVAPKLAANGFRVLLYDLYGRGYSDAPQT-TYDANLYTTQLALLLQYVG----WNKVNVVGVSMGGGIAAAFSAQFPHLIT 174
                  579**************************************86666.78999*********98888....88899********************999 PP

  Hydrolase_4 103 .glilsaPalkikaklkappllklllkllgkllpklqv............snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleera 187
                   +++l+a+a  ++++ ++++  k+l+  l +++   ++             ++    +l r ++   +   +p +   i+ + l++l    ++l ++ 
   CDO69593.1 175 dKVVLIASAGLMESS-DMSRTTKFLSSPLMQVVSCSYPfrlylqyladqkASGNPIGDLVRFQS-AHLPGYNPAIASSIREGPLRSLAPQFAALGRHS 270
                  9****9999777644.466666653333333333333346678999877644444444444443.3456789************************** PP

  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                   k +  +ll+ G++D+vv+ + + ++   ++  + +l +++g+ H++ 
   CDO69593.1 271 RKTNGSVLLIWGTSDQVVPFRYASRVQSLIP--HAELVTIEGGPHDIT 316
                  *********************9999999999..7***********985 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3    0.0014       1.9      51      90 ..     142     183 ..      83     200 .. 0.63
   2 !   13.5   0.0   3.4e-05     0.047      97     140 ..     271     313 ..     261     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0014
  Abhydrolase_5  51 keapklekfvvgGhslGGvvasrfaaee.e.kiegvvflasY 90 
                     ++ + +k  v G s+GG +a+ f+a+  +   + vv++as 
     CDO69593.1 142 LQYVGWNKVNVVGVSMGGGIAAAFSAQFpHlITDKVVLIASA 183
                    4567788999**************998633244778888885 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.4e-05
  Abhydrolase_5  97 selskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                     +++  vl i+gt+D+v++++ +++ +  l  ++++v+ieGg h
     CDO69593.1 271 RKTNGSVLLIWGTSDQVVPFRYASRVQ-SLIPHAELVTIEGGPH 313
                    467888*************98777665.5556799*******99 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.2e-08   9.9e-05      32      92 ..     272     332 ..     259     333 .] 0.89

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.2e-08
  Abhydrolase_4  32 kgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLl 92 
                    k++  vLl+ ++ D ++P++ a+++++ ++ a+lvt eg+ H+  +++ + v++a+ ++L+
     CDO69593.1 272 KTNGSVLLIWGTSDQVVPFRYASRVQSLIPHAELVTIEGGPHDITISHADEVSRALVEFLN 332
                    44579***************************************99999999999999996 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.5   8.5e-06     0.012      28     120 ..      96     170 ..      72     179 .. 0.69
   2 ?   -1.1   0.0      0.85   1.2e+03     141     168 ..     271     298 ..     268     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.5e-06
         DLH  28 nikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevp 120
                   kd++ +la +G+ +l+ dlY r++ d+ +++ +a+++            + +l a    l++v+    +kv vvG  mGG +a +++a+ p
  CDO69593.1  96 IWKDVAPKLAANGFRVLLYDLYGRGYSDAPQTTYDANLY------------TTQL-A--LLLQYVG---WNKVNVVGVSMGGGIAAAFSAQFP 170
                 4689**********************4333333333333............1222.2..2345555...568999999999999999888876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.85
         DLH 141 akikapilalfgeeDefipadeveklee 168
                 +k ++ +l + g+ D+++p+  + ++++
  CDO69593.1 271 RKTNGSVLLIWGTSDQVVPFRYASRVQS 298
                 5778999***********9987776665 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.5e-06    0.0034       4      89 ..      84     162 ..      82     165 .. 0.78
   2 ?   -3.8   0.0       5.4   7.5e+03     165     194 ..     275     302 ..     269     310 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.5e-06
    Lipase_2   4 viivhGnsdlaaeklskliqkflekgyte..aelYattygdteestslerlekCeyvkqlRklilaVlkyTgakkvdivahsmGvpia 89 
                 v+++hG s   a  ++ +++k+  +g+     +lY+  y d  ++t+ ++l+         + +   l+y g +kv++v+ smG+ ia
  CDO69593.1  84 VVLIHGLSV-PAIIWKDVAPKLAANGFRVllYDLYGRGYSDAPQTTYDANLY----T----TQLALLLQYVGWNKVNVVGVSMGGGIA 162
                 9******65.888*************98622567777777777766666665....3....3355667999999**********9997 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.4
    Lipase_2 165 eavfsiwskadevigkaklvcgketslipg 194
                   v  iw ++d+v+        + +slip+
  CDO69593.1 275 GSVLLIWGTSDQVVP--FRYASRVQSLIPH 302
                 556778888888875..5555555555555 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.2    0.0016       2.2     166     202 ..     138     174 ..     133     189 .. 0.77
   2 !    7.7   0.0    0.0012       1.7     295     352 .]     276     333 .]     262     333 .] 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
     DUF2048 166 llhwlereGyGplgltGlSmGGhmaslaasnwpkplv 202
                 l+  l+  G+ ++ + G+SmGG  a+  ++++p+ ++
  CDO69593.1 138 LALLLQYVGWNKVNVVGVSMGGGIAAAFSAQFPHLIT 174
                 55566777999***********999988888887665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
     DUF2048 295 liivvaAkdDayvpresvaslqeiwpgsevryldgGHvsayllkkklfrkaivealer 352
                 ++ ++  ++D+ vp +  + +q++ p +e   ++gG     +++ +   +a+ve l+r
  CDO69593.1 276 SVLLIWGTSDQVVPFRYASRVQSLIPHAELVTIEGGPHDITISHADEVSRALVEFLNR 333
                 6788999*********************************************999876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.3e-06    0.0087      65     186 ..     142     263 ..     116     277 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.3e-06
                    HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE.-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS...GGGGG.STTT CS
  Abhydrolase_3  65 elgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP.vtdlertesesikkaeeladgplltraaldlfwrlylp...eadrd.dpla 155
                     + +  +++ ++G S GG +aaa + ++          +vli   ++ + ++  +++ +++++ + pl++  ++ + +rlyl+   +++++ +p  
     CDO69593.1 142 LQYVGWNKVNVVGVSMGGGIAAAFSAQFPHL---ITDKVVLIASaGL-M-ES--SDMSRTTKFLSSPLMQVVSCSYPFRLYLQylaDQKASgNPIG 230
                    33467789*****************988885...3455555555244.3.33..444445788888***999999999999965543333336644 PP

                    SGGGC.S.-SST---EEEEEETT-TTHHHHHHH CS
  Abhydrolase_3 156 splla.e.dlsglpptlvvvaefDplrdegeay 186
                      ++  +  l g+ p++     + plr+ + ++
     CDO69593.1 231 DLVRFqSaHLPGYNPAIASSIREGPLRSLAPQF 263
                    433222224888888877777777777666555 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   1.7e+03       5      27 ..      65      87 ..      63      89 .. 0.89
   2 ?   11.1   0.0   8.5e-05      0.12      87     159 ..     136     209 ..     127     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                EETTEEEEEEEESS--TTS-EEE CS
         Ndr  5 etkcGsvsvtvqGdqeekkpvll 27
                + ++G+v+  + G +++k++vl+
  CDO69593.1 65 KLPYGQVRYWLIGPEDGKRVVLI 87
                5689************9**9998 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.5e-05
                 TTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEE.EEEES---S---HHHHHHHHHH.......TTTS CS
         Ndr  87 dqllavldhfklksviglGvgaGAyilarfalkhperveg.lvLinitskaagwvewakeKlsskllkkvgltd 159
                 +ql  +l++   ++v  +Gv  G  i a f++++p +++  +vLi   +  ++   +  +K+ s+ l +v  ++
  CDO69593.1 136 TQLALLLQYVGWNKVNVVGVSMGGGIAAAFSAQFPHLITDkVVLIASAGLMESSDMSRTTKFLSSPLMQVVSCS 209
                 689999********************************854899999999999888889999988887776665 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00045      0.62      18      65 ..     144     192 ..     134     219 .. 0.77
   2 ?    1.1   0.0      0.23   3.1e+02     113     130 ..     272     289 ..     268     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00045
                 TB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES--SB--SSEEEE CS
      BAAT_C  18 kvkkdkigllGiSkGgelalllasflk.kisavvlingsavvvegklvy 65 
                 +v  +k+ ++G+S Gg +a + ++ ++  i+  v++ +sa  +e  ++ 
  CDO69593.1 144 YVGWNKVNVVGVSMGGGIAAAFSAQFPhLITDKVVLIASAGLMESSDMS 192
                 466689*********************8777666665665555555544 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.23
                 G--SEEEEEEETT-SSS- CS
      BAAT_C 113 kakgpillvvgedDknwp 130
                 k++g++ll+ g+ D+++p
  CDO69593.1 272 KTNGSVLLIWGTSDQVVP 289
                 799************998 PP

>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   9.7e-05      0.13      94     168 ..     129     205 ..     121     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.7e-05
  Peptidase_S28  94 aDlasfikalkqkfklsssskwitfGgSYsgsLaawarkkyPelvvgava..SSaPllakvdfkeylevvetslakv 168
                    +D+    ++l   +++   +k+ ++G S +g +aa + +++P+l++  v   +Sa l    d +   ++ +  l++v
     CDO69593.1 129 YDANLYTTQLALLLQYVGWNKVNVVGVSMGGGIAAAFSAQFPHLITDKVVliASAGLMESSDMSRTTKFLSSPLMQV 205
                    666666666666677777788999*********************97653338999999999888888877777766 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.006       8.3      44      80 ..     133     169 ..     119     189 .. 0.69
   2 ?    3.1   0.0     0.059        81     129     173 ..     269     316 ..     259     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.006
     UPF0227  44 qalkeleklvaelgddnillvGssLGGyyatrlgerf 80 
                    ++l  l++ +g +++ +vG+s+GG  a+  +++f
  CDO69593.1 133 LYTTQLALLLQYVGWNKVNVVGVSMGGGIAAAFSAQF 169
                 334444445555555669*********9999888776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.059
     UPF0227 129 srlkrperilvllskqDevldy..rravaefraaaeive.ddgdHafk 173
                    k    +l++ ++ D v++      v+ + + ae+v  ++g H ++
  CDO69593.1 269 HSRKTNGSVLLIWGTSDQVVPFryASRVQSLIPHAELVTiEGGPHDIT 316
                 5567788999**********9844456778888888876155589875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2131.97
//
Query:       CDO69594.1  [L=109]
Description: hypothetical protein BN946_scf184759.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:00.52
# Mc/sec: 633.67
//
Query:       CDO69595.1  [L=450]
Description: hypothetical protein BN946_scf184759.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3113.33
//
Query:       CDO69596.1  [L=579]
Description: hypothetical protein BN946_scf184759.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-110  370.6  16.7   1.5e-110  370.1  16.7    1.1  1  ATG22     Vacuole effluxer Atg22 like
    1.8e-12   46.9  32.9    2.6e-08   33.2  12.5    3.1  3  MFS_1     Major Facilitator Superfamily
      0.002   17.8   2.5     0.0032   17.1   2.5    1.3  1  SHOCT     Short C-terminal domain
  ------ inclusion threshold ------
      0.092   12.6   0.1        0.2   11.5   0.1    1.5  1  VbhA      Antitoxin VbhA


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.1  16.7  3.2e-114  1.5e-110       2     467 ..      52     513 ..      51     515 .. 0.97

  Alignments for each domain:
  == domain 1  score: 370.1 bits;  conditional E-value: 3.2e-114
       ATG22   2 tkkellgWylyafaaevfavvavgsfvPllleqlarenGvll.sdksapCsakgde.qcvvkflgieidtaSfvlytfslsvllqavvvislsglADyg 98 
                 t+kel+++yly+ + + +       +  +l+++la++ G  + +     Csa++ + qcv+ ++ ++++++S+vl  +++s+++ ++++ +++++ADyg
  CDO69596.1  52 TRKELWSYYLYYNGDNGVGPN---GYSMTLFQSLATAAGYDPvKGPGSDCSAPDASgQCVLPWGSGTKAVSSVVLVSNGVSFAVMTLIFTTIGSAADYG 147
                 79****************998...9*************97541667789*9987656****************************************** PP

       ATG22  99 nyrknlLlafaligslstilfllv.tpkkYllgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeeeeessetaeeeeskelklstriSsl 196
                 ++ ++lLl++++i + ++++ +++ +p+++ ++++ly+++ +++ga+lv++ +++P l+r++p++++ +e++e++   + +aee+e +e+ +++riS++
  CDO69596.1 148 SFGRWLLLTITVICWGAQFASMSLtSPDRWGVAMALYMIGFITYGATLVFYAAVFPRLARNTPHARDLREKYERG---EISAEEYEVEESLEKNRISNI 243
                 ********************999989***************************************9999999999...********************* PP

       ATG22 197 GlaigylgailvqiisilivialgstatfslrlalllvGlwWliftipaalllkkrpgpplpkglsyliygwkslgrtlkqarklkdvllfLvawflls 295
                 +++ +++g i+ +++++ +++ + +       ++l+l+   W+++ i ++++ ++rpgp lpkg++yl+ gwk+++ ++kq +kl+ ++ +L+a+fll 
  CDO69596.1 244 STMHSNIGYIVTLALNLSLLLPRAND-PKVNNYVLVLTNGYWVLLGIWWFIFQQPRPGPTLPKGEHYLTVGWKQIWIAMKQYKKLPFTFTYLIAFFLLA 341
                 ********************999998.78888999999999********************************************************** PP

       ATG22 296 dgiatvsstavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyvlavvyglv 394
                 dg++t+ +++++ ++ ++++s  + ++l++ + i+++++++ +++++++++++tkk++++ +v+++lipl+G++Gi+++k+G+++ wEf++++v++gl+
  CDO69596.1 342 DGLNTTGTLVSICQNDKFSFSFLQNTYLGLAQAITSTISTLGFWYIQKYWKISTKKMFIVTNVVTILIPLWGMIGIWTDKFGFHNVWEFWAYNVMFGLF 440
                 *************************************************************************************************** PP

       ATG22 395 lgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllll 467
                  +++++ s+++++eL+P+G ++ FF+L+ + +++ss+igp ++++I+D+tg+++ +f fl++L++++ +++++
  CDO69596.1 441 QAPYYAFSQTMMAELTPPGFDNMFFGLFGLSNRASSMIGPNVIQAIIDHTGDNWKGFPFLFALCTAASIVIWF 513
                 *******************************************************************999997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   3.5   3.4e-05      0.15     244     329 ..     124     206 ..      48     213 .. 0.76
   2 !   13.6   3.2   5.2e-06     0.023     121     264 ..     239     383 ..     233     392 .. 0.64
   3 !   33.2  12.5   5.8e-12   2.6e-08      58     172 ..     392     513 ..     375     562 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.4e-05
       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGf.glgfvfpsllalasdla 329
                 +++g  ++++ +  ++    +g  +d +g+  r+ll  + ++++ + +a +++ts   ++++ +l++iGf ++g + + ++a+  +la
  CDO69596.1 124 VSNG--VSFAVMTLIFT--TIGSAAD-YGSFGRWLLLTITVICWGAQFASMSLTSPDRWGVAmALYMIGFiTYGATLVFYAAVFPRLA 206
                 3444..33333333333..5666666.6888889999999999999999999996666666558888999999999888877777776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.2e-06
       MFS_1 121 raigllsagfslGailgpllgglla.sslg.Wravfyilaivsllafvlfllll..peepperkrkspkeeekgtgpaplvp...awkallkdpvlwil 212
                 r   + ++ +++G+i++ +l   l+   ++   +  y+l +    +++l+++++   +++p +  ++++         ++++   a k+ +k p+ + +
  CDO69596.1 239 RISNISTMHSNIGYIVTLALNLSLLlPRANdPKVNNYVLVLTNGYWVLLGIWWFifQQPRPGPTLPKGEHY----LTVGWKQiwiAMKQYKKLPFTFTY 333
                 55567788899999999777776664666665555566666666666655555521444444444555445....555555544457777777766678 PP

       MFS_1 213 lialllfffgfsglltllplylqevlglsglllaglllallalvgailalla 264
                 lia++l + g++++ tl+ +  ++ + +s +l+++ +l+l+++++  ++ l+
  CDO69596.1 334 LIAFFLLADGLNTTGTLVSICQNDKFSFS-FLQNT-YLGLAQAITSTISTLG 383
                 88888887799999999999999999999.77777.6777777765554444 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 5.8e-12
       MFS_1  58 rfGrrrvlllglllfalg.lllll..fa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllassl 148
                 +++ +++++++ ++++l  l+ ++  ++     +++w +++  v+ Gl+++ +++ +++++a+++p+   ++ +gl+++++ +++++gp +  +++++ 
  CDO69596.1 392 KISTKKMFIVTNVVTILIpLWGMIgiWTdkfgfHNVWEFWAYNVMFGLFQAPYYAFSQTMMAELTPPGFDNMFFGLFGLSNRASSMIGPNVIQAIIDHT 490
                 5699**************777776875466679****************************************************************** PP

       MFS_1 149 g..Wravfyilaivsllafvlfllll 172
                 g  W +  +++a+ ++ ++v+   ++
  CDO69596.1 491 GdnWKGFPFLFALCTAASIVI---WF 513
                 ***666666666666666553...22 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.5   7.2e-07    0.0032       4      21 ..     213     230 ..     213     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.2e-07
       SHOCT   4 ekLkeLyarGeIteEEFe 21 
                 + L+e y+rGeI+ EE+e
  CDO69596.1 213 RDLREKYERGEISAEEYE 230
                 57***************9 PP

>> VbhA  Antitoxin VbhA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.5e-05       0.2      20      40 ..     209     229 ..     207     232 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
        VbhA  20 saetvadleayvrGeIdadEl 40 
                 ++ ++++ e+y rGeI+a+E+
  CDO69596.1 209 TPHARDLREKYERGEISAEEY 229
                 67899999************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4097.44
//
Query:       CDO69597.1  [L=96]
Description: hypothetical protein BN946_scf184759.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 653.35
//
Query:       CDO69598.1  [L=186]
Description: hypothetical protein BN946_scf184875.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.6   0.5       0.11   12.3   0.5    1.1  1  MCPVI     Minor capsid protein VI


Domain annotation for each model (and alignments):
>> MCPVI  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5     6e-06      0.11     104     201 ..      72     166 ..      26     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-06
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 104 krkalGeerpatqeeleaLiaaldpkdeeavkqgeptvePiaPeaksvlvPvtl.dlpesvdevkkPvlssesavvvsrPsrlelrraaskrrrkRkra 201
                 + +++ + ++   ++le+++a l+++ ++++  + + ++   P+a+  ++P ++ + ++++ e kkP  + +   +   P   ++ +++ +    Rkr 
  CDO69598.1  72 SSEGISDLQKPDRKNLEKVVAPLKSHSKMVLLHASRCTKDTWPAAE--KIPDQMcPNYDPAHEAKKPKPPKAGNGPHAGP--SSMPPPSQGSNASRKRN 166
                 567777777777789***********9****999999999999875..4676653789***************9999999..67888887777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 1107.71
//
Query:       CDO69599.1  [L=760]
Description: hypothetical protein BN946_scf184875.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-58  198.0   0.0    5.9e-58  196.6   0.0    1.8  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.0   3.3e-62   5.9e-58      35     407 ..     170     588 ..     121     589 .. 0.79

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 3.3e-62
  Pkinase_fungal  35 eeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptivte.sdgrrsy 128
                     +++ ++al q+a+ya +vf+ q +R ++  ++l gs +rl + DRsGv+ s ++d +++p+k++r++ +++ ++ +  G D+t + +   g+ +y
      CDO69599.1 170 ANTKRDALGQIATYASSVFEFQ-HRTHHFSVVLLGSWARLARWDRSGVIFSSKFDYKQEPTKLVRFFWRVARASAEVRGHDTTAT-RvLPGSGDY 262
                     335567899**********999.69999******************************************************995.556777778 PP

  Pkinase_fungal 129 ei...................................kaeeeketekleleeplarqraivgRgTtcwrarkeger.gkeyvvKdsWr.daerk. 185
                     e+                                     ++ + ++ + + +p +  + +vgRgT+ + a   ++  ++ + +Kd+Wr  ++r+ 
      CDO69599.1 263 ELlqawkakdktladddyvakrfvkslsgdrpwwrltVSDKMHGSRDFLVGRPTFAAAGVVGRGTRGYIALSISDPaRPLVYLKDCWRmVQDRSk 357
                     77788888888888999999***************9644444556677777*******************9987775666779*****5344556 PP

  Pkinase_fungal 186 sEaelLkkaeergvegvarlvahedve.ekdddiaeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstsk 278
                      E+++L   +e+gv ++ + + h dve + + + ++ + + d +++  k ++  + v+++  +++++ + ++++++ + ++ e + vd+++++++
      CDO69599.1 358 LEGNILSDLNEKGVANIPTALYHGDVEgQLTVSQTSWKPKPDPHTPsAKEENPFAEVDDVAVEAVPTGSDSAGQSEDA-DPGEPEYVDAKQKQKQ 451
                     9**************************444445588888888888833333333333344444465555555555444.5555566666663333 PP

  Pkinase_fungal 279 rsr...lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskke...gerkglLiDLDlakelsddss 367
                     ++    +++  h rlv+++vG p++++ s + l+++++DaI++h+  ++ka+++HrD+S++Nili  ++ +   +e +glL D +l k  sd+++
      CDO69599.1 452 TKIhcrMKTHQHYRLVVKEVGIPLQEFPSGRVLVRVIADAIAAHEDAYNKAEVMHRDVSIGNILIIPPNAKqgkKEYQGLLTDWELSKRRSDENA 546
                     3323459999*******************************************************976433366999***************999 PP

  Pkinase_fungal 368 esgarertGTleFmaievlkgee..HsyrhDLESffyvllwi 407
                     e  + +rtGT +Fm++  l++ e   ++ + LESf+ ++++ 
      CDO69599.1 547 EPRHPDRTGTWQFMSVHTLSKPEaqVQIADELESFLHIMIYC 588
                     9999****************855569999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5198.02
//
Query:       CDO69600.1  [L=500]
Description: hypothetical protein BN946_scf184875.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-54  185.3   0.0    3.3e-53  180.9   0.0    2.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.041   13.3   0.0    1.4  1  Pkinase         Protein kinase domain
       0.15   12.3   0.0       0.24   11.6   0.0    1.2  1  RFC1            Replication factor RFC1 C terminal domain


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0   5.6e-57   3.3e-53      44     407 ..     100     474 ..      84     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 5.6e-57
  Pkinase_fungal  44 qLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptivte.sdgrrsyei....... 130
                     +   +a  vf+ q +R ++  ++l gs +rl + DRsGv+ s ++d +++p+k++r++  ++ ++ +  G D+t + +   g+++ye+       
      CDO69600.1 100 RFTACASTVFEYQ-HRTHHFSVVLLGSWARLARWDRSGVIFSSKFDYKQEPTKLVRFFWHVARASAEVRGHDTTAT-RvLPGSDDYELlqawkak 192
                     5567889999998.69999******************************************************995.557777788888888888 PP

  Pkinase_fungal 131 ............................kaeeeketekleleeplarqraivgRgTtcwrarkeger.gkeyvvKdsWr.daerk.sEaelLkka 194
                                                   ++++ ++ + + +p +  + +vgRgT+ + a   ++  ++ + +Kd+Wr   er+  E+++L + 
      CDO69600.1 193 dktladddyvakrfvkslsgdrpwwrltVSDKTHGSRDFLVGRPTFAAAGVVGRGTRGYIALSISDPaRPFVYLKDCWRvVHERSkLEGDILAEL 287
                     8888999999*****************644445566677777*******************9987774555559****954455569******** PP

  Pkinase_fungal 195 eergvegvarlvahedveekdddiaeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstskrsrlenrvhrr 289
                     +e+gv ++ + + h dve+++   + + k+ + +++   r+              ++++v+  ++ +             ++ k+ ++++  h r
      CDO69600.1 288 NEKGVGNIPTALYHGDVEGQVTLSQTFWKNSSRNTD---RN--------------TQENVQDDARAG-------------TEVKKCSMKTHQHYR 352
                     *****************9333222222222222222...11..............111222222111.............223344468899*** PP

  Pkinase_fungal 290 lvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitds..kkegerkglLiDLDlakelsddssesgarertGTleFma 382
                     lv+++vG p++++ + k+l+ a++DaI +h+  ++ ag++HrDiS++Nili+     ++ e +glL+D +l k ++d+++e  + +rtGT +Fm+
      CDO69600.1 353 LVVKEVGLPLQEFPTGKALVDAVIDAIYAHQDAYNLAGVMHRDISVGNILILPYrdGENTEYSGLLADWELSKRVEDETKEPRHPDRTGTWQFMS 447
                     ***************************************************94432455899***************9999999*********** PP

  Pkinase_fungal 383 ievlkgee.Hs.yrhDLESffyvllwi 407
                     ++ l + + H  + + LESf+ v+++ 
      CDO69600.1 448 VGTLLDPKaHVqVSDELESFLHVIIYC 474
                     ****985569615666********996 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.8e-06     0.041     117     165 ..     389     447 ..     344     465 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.8e-06
                 TTEE-SS-SGGGEEEE..TTTE.....EEE-SGTTSEESSSSCS...BCTTTSCGGGS- CS
     Pkinase 117 kgiiHrDlKpeNiLid..ekge.....lKitDFGlakelesssk...ltsfvgtseYlA 165
                 +g++HrD+   NiLi   ++ge       ++D+ l+k++e ++k     +++gt ++++
  CDO69600.1 389 AGVMHRDISVGNILILpyRDGEnteysGLLADWELSKRVEDETKeprHPDRTGTWQFMS 447
                 46*************95444447778888************999988889999999997 PP

>> RFC1  Replication factor RFC1 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05      0.24      30     116 ..     295     388 ..     292     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
                 HHHHTT-EE-SS-----SHHHHHHHHHHHHHHHHHHHTTTTT------HHHHHT.TTHHHHHHHHS----..-----HHHHHHTT....T--SH CS
        RFC1  30 lPaslvrgslegrisFpswLGknSktnKnkRllqelqshlrlktsaskselrld.ylpllkkklvkpLke..egkdgveevielm....deysL 116
                 +P+ l +g +eg+++ ++ + knS++n  +   +++q  +r+ t+ +k +++++    l+ k++  pL+e  +gk+ v+ vi+ +    d+y+L
  CDO69600.1 295 IPTALYHGDVEGQVTLSQTFWKNSSRNTDRNTQENVQDDARAGTEVKKCSMKTHqHYRLVVKEVGLPLQEfpTGKALVDAVIDAIyahqDAYNL 388
                 699999*********************************************99978889999999****9443445599999987555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3389.02
//
Query:       CDO69601.1  [L=160]
Description: hypothetical protein BN946_scf184875.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 1024.31
//
Query:       CDO69602.1  [L=1259]
Description: hypothetical protein BN946_scf184875.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-30  105.2   1.8      1e-27   97.3   0.4    2.9  2  Foie-gras_1  Foie gras liver health family 1
    1.5e-17   63.6   0.0    1.1e-14   54.1   0.0    2.1  2  Gryzun       Gryzun, putative trafficking through Golgi
    0.00031   21.0   0.5      0.013   15.8   0.0    3.3  3  TPR_12       Tetratricopeptide repeat
     0.0045   17.0   0.0     0.0085   16.1   0.0    1.4  1  Gryzun-like  Gryzun, putative Golgi trafficking
     0.0081   16.0   0.2      0.081   12.8   0.0    2.6  2  TPR_10       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.05   13.4   0.0    2.1  1  TPR_1        Tetratricopeptide repeat
      0.054   13.6   3.0       0.12   12.5   0.1    2.7  2  TPR_2        Tetratricopeptide repeat
      0.068   12.6   0.0        5.9    6.2   0.0    2.5  2  Trs65        TRAPP trafficking subunit Trs65
      0.086   12.9   0.1        0.6   10.3   0.1    2.5  2  TPR_7        Tetratricopeptide repeat
       0.16   12.3   0.0       0.58   10.5   0.0    2.0  1  TPR_8        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Foie-gras_1  Foie gras liver health family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.55   9.8e+02      28      72 ..     250     307 ..     242     321 .. 0.66
   2 !   97.3   0.4   5.8e-31     1e-27      15     258 ..     345     595 ..     341     596 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.55
  Foie-gras_1  28 eAvrkfrkHiervkdv............vgrrgkgt..lafygweaWearq...asvfAeLi 72 
                  e++++++k ++r++++            +++    t  ++ +  e+W +r+   ++ fAe++
   CDO69602.1 250 EYYTNHSKRVRRKRNRhsqvsyqlpispMAS----TgvARPLRPEGWTVRYefkMACFAEFR 307
                  5556666666666666777777777544333....123566777899999987777788876 PP

  == domain 2  score: 97.3 bits;  conditional E-value: 5.8e-31
  Foie-gras_1  15 kiirlllsngqpseAvrkfrkHiervkdvvgrrgkgtlafygweaWearqasvfAeLieeasipgltslqtqqstleeq................... 93 
                  ki++l+l+n+++s A++   +H+++ +d+    g g+  f+ w  W+arq+ vfAeL+e+   + l+  ++   ++ ++                   
   CDO69602.1 345 KIVKLYLYNNEHSLALSYQNSHMRKFADFSRGWGIGEETFEFW-SWLARQHRVFAELLEQGTRSTLKIPSPYPPQAPSPamlaaqsleasqmgleamr 441
                  9****************************9999999999999*.****************99999999998765555558999*************** PP

  Foie-gras_1  94 .....pwellhhagyyyqlaakhakerrelaeqiandpeqspassiassayvydtylapepheeyplsgseekgvahskliidlLekaleeFskrkq. 185
                       p + l h+g+yy+ aa+ +++rre +  +                      l  e h+ ++    +e++v+h + +++l+ +++e F+k +  
   CDO69602.1 442 vlgvnPNQALQHPGFYYYMAARCTERRRERFLGA----------------------LEFEGHQTNSPGFANERKVDHLAIVLELYTRSYEIFRKWGPq 517
                  *****************************99999......................6889999999999999*********************99875 PP

  Foie-gras_1 186 .....tRlaeelsleiAeeylrlgdwkkalellqpltlsyrkegWwsLleevlwalrecalkvqdvkdvlavdleLls 258
                        Rl+  ++++iA +y+++g+++ a+++++ ++ +yr+e+W sLl+ +l +   ca +++dv+  +++ +e+l 
   CDO69602.1 518 nvqspGRLTLWIAYRIAHTYYESGKFDMAVRFFERIAKTYRRESWGSLLQPLLTQWYACAQQLGDVELSVKLLIEMLG 595
                  66666788888888*************************************************************986 PP

>> Gryzun  Gryzun, putative trafficking through Golgi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   6.2e-18   1.1e-14       6     316 ..     633     933 ..     628     938 .. 0.83
   2 !    7.3   0.0   0.00095       1.7     447     566 ..    1069    1192 ..    1053    1195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 6.2e-18
      Gryzun   6 edvvsflsasfvFekkegkvGeplqaQlaitSealkssapitlsevkveFegslkpiklkhdeeeeeesskskvsissvsleeetessskeseteklse 104
                 +++  fl as+vF  +e  vG ++  Ql+++S+++ s ++i ++++ ++F++   p+ ++h +++e    + +++i +v+  +  +   + +++ +  e
  CDO69602.1 633 SEAKAFLNASVVFWDSEVDVGTQAPFQLTLSSQSNVSLSSIPFTSLAIHFSTDALPLIVRHPQDQE----DPDAEIPAVHRIDVGQIIVAPTPS-ESRE 726
                 57789*********************************************************9876....344555555555552223333333.3444 PP

      Gryzun 105 lkgsadLtlkpgqtkvfelaiilreaGeakvasvtlsveeekFdLe.....ytisekeekeavwWaeskkgakkrrvrkdsdtaikilPkPPkleiklp 198
                 ++g   L   pg   vf+ ++    + + +++++ l+++e+++ +e     +t++ ++   a  W  s +  +   +r++ ++a+k++ +   +++ ++
  CDO69602.1 727 VEG--ALRWGPGTSIVFTGSVSSSFPTQLSISKLLLTIKENSWWIEvplipTTVQLENALIAPRWLCSVDPLRFIPIRREDHSAVKVHWRRHEVQVAIS 823
                 555..699************************************9966666668888888899999999999999999999999***********9986 PP

      Gryzun 199 elkeqYYtnEkieLeleieNeEdeeaevklevrllGesesalkisvldeeeeaeeaeeeeekeeslpklgklessastelsivltetedpleyeleika 297
                  l    Y  E++ +e++i Ne+d e +v+l+v l  ++ +++   v +  +++ ++    +  + ++  g l+ ++s+  ++ lt++ +p e  ++i++
  CDO69602.1 824 -LDGPAYIGEEFPIEIRIVNEDDRELDVVLDVLLQPTEIDEAVNYV-E-IDDQRSS----SLLKAIA-CGVLAPGSSVVKKLYLTNAGTPGERVIDISV 914
                 .5566678999*********************99988887765555.3.3333322....3566666.9****************************** PP

      Gryzun 298 sYhlvsdletpiiktlsvk 316
                 + h +  + tp++  + ++
  CDO69602.1 915 QSHSTVQPPTPVSPNTPTS 933
                 ***********99777665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00095
      Gryzun  447 aleikWrRkssessseaevntttlavprllvlgsEPRvLasvsassalpglihldytlEN..ps.mHfLtFgltmeas.eeFAFsGpKqttvq.llP 538 
                  + ei WrR  s+ s +   +tt l+ p l+ ++     L  + + ++l   i l +t+ N  p+ +   t +l  ++s + F  +G ++  v  llP
  CDO69602.1 1069 EYEIVWRRLLSDGS-HGLRSTTRLPLPSLIPPSDGLIALIDAPTVAHLHAPIPLRLTVRNrhPTrTATVTVQLEADSSaDAFVVAGLRHGRVPlLLP 1164
                  679******99976.57999********999999888899999999*************9543313445555555554478999**9997765278* PP

      Gryzun  539 lSRrtvrYrllplvrgawirpqlvvvDk 566 
                      +++++l+p+  g+   p+ +v D+
  CDO69602.1 1165 GQEESMTWNLIPVECGVVKLPRFKVLDR 1192
                  ****************999999999996 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.29   5.2e+02      56      74 ..     305     323 ..     289     325 .. 0.74
   2 !   15.8   0.0   7.2e-06     0.013      24      76 ..     502     558 ..     501     559 .. 0.79
   3 ?   -3.0   0.0       5.3   9.6e+03      12      28 ..     576     592 ..     573     600 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.29
      TPR_12  56 ralgryeeAlelleealai 74 
                 + +g+ + Al+++++a+a+
  CDO69602.1 305 EFRGEDQVALKHYQDAYAA 323
                 4567788888888888876 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.2e-06
      TPR_12  24 ellekaleiarrllGpdhp.....ltattlrnLgrlyralgryeeAlelleealaiae 76 
                 el+ +++ei+r++ Gp++      lt+++ + ++ +y+++g+++ A++++e+  + ++
  CDO69602.1 502 ELYTRSYEIFRKW-GPQNVqspgrLTLWIAYRIAHTYYESGKFDMAVRFFERIAKTYR 558
                 7788888888887.666542333379*************************9887776 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.3
      TPR_12  12 vlrrlgrydeAlellek 28 
                 + ++lg+ + + +ll +
  CDO69602.1 576 CAQQLGDVELSVKLLIE 592
                 77889998888888765 PP

>> Gryzun-like  Gryzun, putative Golgi trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.8e-06    0.0085      14      55 ..    1146    1188 ..    1137    1189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.8e-06
  Gryzun-like   14 sdnFfvsGlkkvnlr.ilrgekqeilfnFyPLkaGllkLPkin 55  
                    d+F+v Gl   ++  +l+g+++ + +n +P   G  kLP  +
   CDO69602.1 1146 ADAFVVAGLRHGRVPlLLPGQEESMTWNLIPVECGVVKLPRFK 1188
                   589******999986268**********************865 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.75   1.3e+03      15      31 ..     307     323 ..     301     330 .. 0.89
   2 !   12.8   0.0   4.5e-05     0.081       2      34 ..     527     559 ..     526     561 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.75
      TPR_10  15 rgrydeAealleealai 31 
                 rg+ + A++++++a+a+
  CDO69602.1 307 RGEDQVALKHYQDAYAA 323
                 8999**********986 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.5e-05
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrr 34 
                 + +   +a+++++ g++d A++++e+   ++rr
  CDO69602.1 527 LWIAYRIAHTYYESGKFDMAVRFFERIAKTYRR 559
                 5566679************************98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.8e-05      0.05       5      26 ..     531     552 ..     528     557 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyek 26 
                 y+++++y++ gk+d A+ ++e+
  CDO69602.1 531 YRIAHTYYESGKFDMAVRFFER 552
                 99******************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.5       0.8   1.4e+03      14      28 ..     307     321 ..     297     324 .. 0.69
   2 ?   12.5   0.1   6.9e-05      0.12       5      29 ..     531     555 ..     529     559 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.8
       TPR_2  14 lgdyeeAleafekAl 28 
                 +g+ + Al++++ A 
  CDO69602.1 307 RGEDQVALKHYQDAY 321
                 567777888888775 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.9e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 y+++  yy++g+++ A+++fe+  +
  CDO69602.1 531 YRIAHTYYESGKFDMAVRFFERIAK 555
                 99*******************9766 PP

>> Trs65  TRAPP trafficking subunit Trs65
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0033       5.9     165     206 ..     817     855 ..     794     922 .. 0.77
   2 ?    3.5   0.0     0.022        40     266     302 ..    1158    1194 ..    1139    1204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0033
       Trs65 165 dlgitltfsgpskkvkvGeefswkvfvvNrsskerkLaLivi 206
                 ++ + +++ gp    ++Geef +++ +vN+ ++e++ +L v+
  CDO69602.1 817 EVQVAISLDGPA---YIGEEFPIEIRIVNEDDRELDVVLDVL 855
                 566777888888...***************999988666443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.022
       Trs65  266 RvGpLapgacyevelrflalreGvlsleavrvvDlgs 302 
                  Rv+ L pg+  + + ++++++ Gv++l   +v+D  +
  CDO69602.1 1158 RVPLLLPGQEESMTWNLIPVECGVVKLPRFKVLDRRN 1194
                  9*********************************765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00033       0.6       4      24 ..     532     552 ..     530     561 .. 0.85
   2 ?   -3.4   0.0       7.8   1.4e+04      10      27 ..     578     596 ..     576     603 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                 ++a++y + G+++ A++++e+
  CDO69602.1 532 RIAHTYYESGKFDMAVRFFER 552
                 79******************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
       TPR_7  10 srlGdyeeAielyeqsL.a 27 
                 ++lGd e  ++l+ ++L  
  CDO69602.1 578 QQLGDVELSVKLLIEMLgH 596
                 6899999999999888744 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00032      0.58       5      27 ..     531     553 ..     529     558 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                 y+++++y + g++++A+ ++e+ 
  CDO69602.1 531 YRIAHTYYESGKFDMAVRFFERI 553
                 99******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 8399.12
//
Query:       CDO69603.1  [L=572]
Description: hypothetical protein BN946_scf184875.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-31  108.6   0.1    5.4e-31  108.0   0.1    1.1  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.1     3e-35   5.4e-31      43     198 ..     219     380 ..     211     386 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 3e-35
                 ....TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS..--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT..---BBTTCTCCB--SSSH.HHH CS
     Amidase  43 kekgpLhGvPisvKDnidvkgvpttaGskalenypaek..DatvverLkkaGavilgkTnmdefamgsstensvf..gptrNPwdksrtpGGSSG.GsA 136
                 ++++pL+G  ++vKD +dvkg++t +G +a+ + +++k   a  ++rL + G+v++gk+++++fa g ++    +  ++  NP+   +  G SS+ G +
  CDO69603.1 219 TPEKPLAGFRLAVKDIYDVKGLRTGCGNRAFWQLYPPKnrTAPAIQRLLDGGMVLVGKAKTSQFANGETATDDWVdlHAPYNPRGDGYQDGSSSStGPG 317
                 6789************************9988887777356889***********************99999987779*************98776888 PP

                 HHHHT.TSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHH CS
     Amidase 137 AavAa.glvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsve 198
                  a Aa    ++a+G+DtGGS R PA  +g++G +P++g vS + v++l+  ld++G++ar+++
  CDO69603.1 318 TAEAAyPWLDFAVGSDTGGSMRGPAGANGVFGNRPSHGAVSLDDVMPLSPELDTAGIFARDAK 380
                 7766626899**************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 4330.64
//
Query:       CDO69604.1  [L=72]
Description: hypothetical protein BN946_scf184875.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 549.50
//
Query:       CDO69605.1  [L=146]
Description: hypothetical protein BN946_scf184875.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1077.12
//
Query:       CDO69606.1  [L=134]
Description: hypothetical protein BN946_scf184875.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-07   29.2   0.0    1.1e-06   28.9   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00032   21.1   0.0    0.00054   20.3   0.0    1.4  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0055   16.6   0.0     0.0092   15.9   0.0    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
       0.02   15.5   0.0      0.025   15.3   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
       0.14   12.3   0.0       0.24   11.6   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.1e-10   1.1e-06      42     117 .]      25      97 ..       5      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.1e-10
                     TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE.EEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  42 geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl.aveedndaairlYeklGF 117
                       +iG is +   +     +   ++ V p+ rg+G+G+ L + ++++  + g+++ v+  v ++n+a+++l+e l F
      CDO69606.1  25 AHIIGNISTHFCRF----QICNAGFLVPPAQRGHGIGTVLARSYLHYGPRLGYEASVFnLVYVNNVASVKLWEALNF 97 
                     33444444444444....4445599****************************664334799**********99988 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-07   0.00054      14      75 ..      27      98 ..      10      99 .. 0.68
   2 ?   -3.6   0.0       4.3   1.6e+04      66      72 ..     123     129 ..     113     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
                    EEEEEEEEEESTCTEE..EEE-GGGTTSSHHHHHHH.HTT....SEEE..EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7 14 ivGfialslldaeitr..laVdpeyrgkGiGraLle.aae....kgii..le.qlelnaekaikfYeklGFe 75
                    i+G i+ + + ++i++  + V p+ rg+GiG+ L + + +     g++  ++  +++n+ +++k++e l F+
      CDO69606.1 27 IIGNISTHFCRFQICNagFLVPPAQRGHGIGTVLARsYLHygprLGYEasVFnLVYVNNVASVKLWEALNFT 98
                    56655544443455557799***************96422334444333323334566658899***99997 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.3
                     HHHHHHT CS
  Acetyltransf_7  66 ikfYekl 72 
                       fY+++
      CDO69606.1 123 WVFYRRF 129
                     3488875 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.6e-06    0.0092      28      80 ..      46     100 ..      42     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-06
                 EE-GGG-SSSHHHHHHHHHHHHHHHS-S-..EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  28 qvlpehrrrGlgsrlvkalakeiaergkt..vllvvvasNtpsirlyeklGfeki 80 
                  v p  r+ G g++l+++  +   + g++  v+ +v  +N +s +l+e+l+f+k+
  CDO69606.1  46 LVPPAQRGHGIGTVLARSYLHYGPRLGYEasVFNLVYVNNVASVKLWEALNFTKA 100
                 577899************988888877651156689****************996 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0     7e-06     0.025      65     138 .]      27      98 ..       8      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7e-06
  Acetyltransf_3  65 viGsvglrdleeedeeaelgymlapsfwgkGyateavralleyafeelgler.lvavidkeNeaSirvleklGfe 138
                     +iG ++ +    +   ++ g+++ p+ +g+G++t  +r+ l+y   +lg+e  ++  +  +N aS+++ e l f+
      CDO69606.1  27 IIGNISTHFCRFQI--CNAGFLVPPAQRGHGIGTVLARSYLHYG-PRLGYEAsVFNLVYVNNVASVKLWEALNFT 98 
                     47777777554443..99**************************.777788549999************999885 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.6e-05      0.24      32      52 ..      47      67 ..      45      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.6e-05
  Acetyltransf_CG 32 VpeelrGkGiAkkLvkaaldd 52
                     Vp++ rG+Gi+  L+++ l +
       CDO69606.1 47 VPPAQRGHGIGTVLARSYLHY 67
                     9***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 950.69
//
Query:       CDO69607.1  [L=165]
Description: hypothetical protein BN946_scf184875.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-07   29.7   0.0    5.9e-07   29.3   0.0    1.2  1  Cyclin_N  Cyclin, N-terminal domain
    1.7e-06   28.5   0.0    2.2e-06   28.1   0.0    1.1  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   6.6e-11   5.9e-07      72     127 .]      75     130 ..      50     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 6.6e-11
                 CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT--- CS
    Cyclin_N  72 klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdls 127
                   +++++++ ++A+Kv  +++ + + + ++ ++ f  +ei++mEr++ ++L+++l+
  CDO69607.1  75 SGHRLFISAFMIASKVICDDTYSNKSWSIVGQGMFALREINQMEREMCSYLEWQLN 130
                 67899*************************999*********************96 PP

>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.4e-10   2.2e-06     109     160 ..      75     128 ..      59     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.4e-10
                 THHHHHHHHHHHHHHHH-SS---HHHHHHHHT..S-HHHHHHHHHHHHHHTTT- CS
      Cyclin 109 nihRllivallvatKflvDlsysnekfakvgg..islkELnkLEidFlflvdFd 160
                 + hRl i a+++a+K+++D  ysn+ ++ vg     l+E+n++E + +  ++++
  CDO69607.1  75 SGHRLFISAFMIASKVICDDTYSNKSWSIVGQgmFALREINQMEREMCSYLEWQ 128
                 67****************************864479*********999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1240.01
//
Query:       CDO69608.1  [L=270]
Description: hypothetical protein BN946_scf184875.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1963.76
//
Query:       CDO69609.1  [L=157]
Description: hypothetical protein BN946_scf184778.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1081.44
//
Query:       CDO69610.1  [L=68]
Description: hypothetical protein BN946_scf184778.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 473.60
//
Query:       CDO69611.1  [L=124]
Description: hypothetical protein BN946_scf184778.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0028   16.5   0.0      0.003   16.4   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-07     0.003     298     351 ..      37      90 ..       5      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-07
  Pkinase_fungal 298 piekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkg 351
                     +++++++  ++l a++D++  +++++ ++g +H D+ +n il+ d+ + ++++g
      CDO69611.1  37 TVTEMDDLADVLLAMQDVLYVLNRMMWDTGTVHGDVNTNTILLFDEPSMADKTG 90 
                     678999999***********************************9988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 871.57
//
Query:       CDO69612.1  [L=156]
Description: hypothetical protein BN946_scf184778.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00017   21.7   0.1     0.0016   18.6   0.1    2.0  1  Ribonucleas_3_3  Ribonuclease-III-like


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   8.7e-08    0.0016       7     120 ..      25     142 ..      20     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.7e-08
  Ribonucleas_3_3   7 qaltHkSfangrk.........ghNerLefLGdavLklsvseyllekaekdegeltklraslvseeslaeiAkelgLgkvlrlrkgeeetegsg 91 
                       ++tH+S + +r+         +    L++LG++vL+ ++++ +l+++e +++++t ++ s++  +++     + + ++ +r     +++++++
       CDO69612.1  25 VVVTHRSLKTARQlaandkygeDGGVTLAVLGQKVLETVYAQGILSHFEDRKVNNTMTLLSMLP-TRIGGWVDQYKWKEKVRRAP-DVDMNTQE 116
                      679*****9888776555333333568*****************************99977765.56777778888887777633.45555544 PP

  Ribonucleas_3_3  92 rekvladaleAliGAiyldkgaevaqefv 120
                      +e   +++++A +G +++++g+e++++++
       CDO69612.1 117 EE---CTLFHAYVGTVFVEQGYEAVRAWI 142
                      44...678889999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1139.06
//
Query:       CDO69613.1  [L=1207]
Description: hypothetical protein BN946_scf184851.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-32  110.3   0.0    9.9e-32  109.0   0.0    1.8  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
      2e-31  108.4   0.2    5.2e-31  107.0   0.2    1.8  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    2.1e-27   96.1   0.1    3.6e-27   95.3   0.1    1.4  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    2.7e-19   69.0   2.8    7.1e-19   67.7   0.5    2.6  2  Integrase_H2C2   Integrase zinc binding domain
      1e-14   54.1   0.2    2.4e-14   52.9   0.2    1.7  1  Chromo           Chromo (CHRromatin Organisation MOdifier) do
    2.7e-10   40.7   0.0    6.6e-10   39.4   0.0    1.6  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    2.5e-08   34.4   0.1    5.9e-08   33.3   0.1    1.6  1  Asp_protease_2   Aspartyl protease
    4.2e-08   33.1   0.0    7.6e-08   32.2   0.0    1.3  1  RVP_2            Retroviral aspartyl protease
    9.5e-06   25.4   0.0    1.9e-05   24.4   0.0    1.5  1  Asp_protease     Aspartyl protease
  ------ inclusion threshold ------
        5.9    6.9   7.1        5.1    7.1   0.3    3.1  2  SF3a60_bindingd  Splicing factor SF3a60 binding domain


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   5.5e-35   9.9e-32       1      97 [.     574     671 ..     574     676 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 5.5e-35
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgk.erpiafaSrklskaernysttekellAivwalkkfrhyllgrk 97 
                  W+eeqe+af++lk+a+tsap+L++ d+  pf let +Sd++ gavLsq d+ +k ++p+af+S++l+ +e ny++++ke+lAi++al+++rh l+g++
   CDO69613.1 574 WGEEQEQAFNSLKKAFTSAPILRILDDVNPFRLETESSDFATGAVLSQLDPTDKlWHPVAFYSKSLNVHEWNYEIYDKEMLAIIRALEEYRHHLEGHP 671
                  ************************************************************************************************75 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.2   2.9e-34   5.2e-31       4     105 .]     602     706 ..     599     706 .. 0.95

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 2.9e-34
                 S-EEEEEEECTEEEEEEEEEETTE...EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHHH CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreedge.erpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarWa 99 
                 +pf let +sd ++gavLsq +  ++ ++p+af+S++l+ +e ny++++ke+lAi+ al+++rh l+g ++ +++ +Dh+nl+y+++ ++l++r+arWa
  CDO69613.1 602 NPFRLETESSDFATGAVLSQLDPTDKlWHPVAFYSKSLNVHEWNYEIYDKEMLAIIRALEEYRHHLEGhPEkVEIWSDHQNLTYFKTAQKLTRRQARWA 700
                 69******************9888888*****************************************8667******************9******** PP

                 HHC-XX CS
   RT_RNaseH 100 leLsey 105
                 l L ++
  CDO69613.1 701 LYLTRF 706
                 ***987 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.1     2e-30   3.6e-27       1     222 []     365     526 ..     365     526 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 2e-30
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ++K + gs R++    vdy++ln++++k           +++p++ +              +++  +a +++k+Dl+ ++++v+ +e ++ +taf ++ 
  CDO69613.1 365 VKKSD-GSLRLV----VDYRKLNNITIK---------NRYPIPRIAEL-------------VDSLSQASIFTKIDLRWGYNNVRIREGDEWKTAFITH- 435
                 58999.*****8....8***********.........***********.............8899*********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                                         +g+ye++++ +G++++P++f+ +mn++l +l +   + ++++Y DDili++++  ++ ++ ++v ++l++  l  
  CDO69613.1 436 ------------------------RGLYEATVMYFGFANAPATFQAMMNDILGDLIR---DGHVIVYLDDILIFTNDIRQHRAITREVLKRLRDKDLFA 507
                 ........................9*******************************9...69************************************* PP

                 EGGG-EEE.....ESSEEETTEEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvtl 222
                 +peK+ +      +++++yLG+++
  CDO69613.1 508 KPEKCLFE-----QSSIEYLGMII 526
                 ********.....9*******975 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.5     4e-22   7.1e-19       3      57 ..     823     879 ..     821     880 .. 0.96
   2 ?    0.1   0.1      0.49   8.7e+02       7      21 ..    1187    1199 ..    1184    1205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 4e-22
  Integrase_H2C2   3 kslrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     ++lr++i++++Hd   agH+G+ k +e+++r+y+Wpgm+  vkkyv  C+tCqr k+
      CDO69613.1 823 DDLRRRIVQRHHDLpsAGHPGWWKPYELVSRNYWWPGMSIFVKKYVTGCDTCQRMKN 879
                     689****************************************************98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.49
  Integrase_H2C2    7 keilkeaHdsagHlG 21  
                      +e++ke+H+   H+ 
      CDO69613.1 1187 RELIKEFHER--HPH 1199
                      79*******5..654 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.2   1.4e-17   2.4e-14       1      54 []    1146    1196 ..    1146    1196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.4e-17
                  EEEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo    1 yeVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkkr 54  
                  ++Ve ++d+r  + +l  +YlV+Wkg+ +++++WEp +nl++  +eli+eF++r
  CDO69613.1 1146 FKVEAVLDSRRYRQQL--QYLVRWKGYGPEDDSWEPVSNLANS-RELIKEFHER 1196
                  68**************..***********************99.99******97 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   3.7e-13   6.6e-10       9      92 .]      94     180 ..      91     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 3.7e-13
                      EEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTST.T-.E.EEEEEE.EEE.EETTEEEEEEEEEESSSSEEEEHHHHHH CS
  gag-asp_proteas   9 pvkflvDTGAsstiiseelaerlglsrkedkgkvevktangev.ea.k.rvrlds.vkiggielrnvsavvlegelddlLLGldfLkr 92 
                      +v++lvD+GA++t+i+++++e+ +l +++ +++  v + +g++ +  k ++ ++s ++ig+++ +  +++v++  ++d++LG  +L+r
       CDO69613.1  94 QVEALVDSGATTTFINKSVVEKYHLVTSKLATPYDVYNTDGTTnKNgKiTHAIRSyIEIGSHKST-HQVLVADLGKKDMILGYTYLRR 180
                      89**********************************999998743322233455449****9998.599****9************97 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   3.3e-11   5.9e-08       9      89 ..      94     176 ..      91     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.3e-11
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgagge.vkarlvrlds...lklggltlknvpalvldlgeeidglLGmd 89 
                      v++l+D+Ga+tt+i+++++ek  l +++++++  v   +g+ +k  +++      +++g+++ + +++lv+dlg + d++LG+ 
      CDO69613.1  94 QVEALVDSGATTTFINKSVVEKYHLVTSKLATPYDVYNTDGTtNKNGKITHAIrsyIEIGSHKST-HQVLVADLG-KKDMILGYT 176
                     6899**************************99988877777634443333321347*****9997.79*****77.99*****85 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.3e-11   7.6e-08      34     125 ..      96     189 ..      90     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.3e-11
       RVP_2  34 tvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksve..ieiqgiefladlilLdlkdlDviLgmdWLsknkanidcae 125
                   L dsGa+  Fi k++v+k++l +++L tp  +    g + +  +i++++   iei +++ + ++++ dl + D+iLg  +L ++k +id  +
  CDO69613.1  96 EALVDSGATTTFINKSVVEKYHLVTSKLATPYDVYNTDGTTNKNGKITHAIRsyIEIGSHKSTHQVLVADLGKKDMILGYTYLRRHKPEIDWER 189
                 5699****************************99887688888889999885559*********************************999765 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-08   1.9e-05      33     124 .]      92     186 ..      90     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-08
  Asp_protease  33 gvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGvGtkkilGrvhsa...evklgdlflpvalsvledkevdlllGldllkrhqviid 124
                   +v+v+a+vdsGa ++ ++k++ e+  l+    +    + +  Gt++  G++ +a    +++g++  + ++ v +  + d++lG   l+rh+  id
    CDO69613.1  92 KVQVEALVDSGATTTFINKSVVEKYHLVTSKLATPYDVYNTDGTTNKNGKITHAirsYIEIGSHKSTHQVLVADLGKKDMILGYTYLRRHKPEID 186
                   689*********************998765555555788999********95542335999999999************************9887 PP

>> SF3a60_bindingd  Splicing factor SF3a60 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.7      0.22   3.9e+02       8      18 ..     544     552 ..     544     555 .. 0.80
   2 ?    7.1   0.3    0.0028       5.1      18      26 ..    1190    1198 ..    1189    1198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
  SF3a60_bindingd   8 FseFYkrLkeI 18 
                      F++FY+r+  I
       CDO69613.1 544 FANFYRRF--I 552
                      9******8..5 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0028
  SF3a60_bindingd   18 IKdyHrkYP 26  
                       IK++H ++P
       CDO69613.1 1190 IKEFHERHP 1198
                       9*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.48
# Mc/sec: 7483.61
//
Query:       CDO69614.1  [L=436]
Description: hypothetical protein BN946_scf184851.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-21   74.3   0.0    1.1e-20   73.7   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
       0.01   15.9   2.2       0.01   15.9   2.2    2.2  2  zf-CCHC          Zinc knuckle
       0.15   11.8   0.4        0.6    9.9   0.4    1.9  2  zf-CCHC_4        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   1.8e-24   1.1e-20       2     135 ..      47     184 ..      46     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.8e-24
  Retrotran_gag_2   2 kkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkvv 95 
                      k+k+   +  I+ +i+d+ll +vk    a++vW + ++++e+ks++    lr  l  +k++eg +v++h+n+l  + +eL+++g + ++++  +
       CDO69614.1  47 KQKEYATRQQIYGMITDALLLKVKALPLAADVWAAVAKEHEGKSEMYVTSLRAHLLGTKCAEGADVRKHFNTLIRIREELATMGSPYPNNEFSA 140
                      678888999************************************************************************************* PP

  Retrotran_gag_2  96 llLasLPesyetfvtaies....seedltleevieklleeeerr 135
                      +l +sLPesy+t+ t++ +        l++e++i ++ +e++rr
       CDO69614.1 141 TLFQSLPESYSTLLTTLSTtarmTGHLLSPEYIIFAVSKEYDRR 184
                      *****************998877778899999999999999987 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   2.2   1.7e-06      0.01       2      16 ..     205     219 ..     204     219 .. 0.95
   2 ?   -0.6   0.1      0.29   1.7e+03       8      13 ..     427     432 ..     426     434 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                  C+nC + GH++ +C
  CDO69614.1 205 ECFNCKRKGHVKANC 219
                 6************** PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.29
                 SSSSTT CS
     zf-CCHC   8 epGHia 13 
                 ++GHi+
  CDO69614.1 427 RMGHIS 432
                 59***8 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4    0.0001       0.6      34      47 ..     206     219 ..     202     220 .. 0.89
   2 ?   -2.2   0.0      0.59   3.5e+03      11      21 ..     329     339 ..     328     340 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
   zf-CCHC_4  34 CyiCgvlGHsdkrC 47 
                 C++C + GH+ ++C
  CDO69614.1 206 CFNCKRKGHVKANC 219
                 *************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.59
   zf-CCHC_4  11 mkikkesGeea 21 
                 ++ik ++Ge++
  CDO69614.1 329 VHIKVPNGESS 339
                 79******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2878.39
//
Query:       CDO69615.1  [L=89]
Description: hypothetical protein BN946_scf184851.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0033   17.6   0.0     0.0055   16.9   0.0    1.4  2  rve       Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.46   8.2e+03       8      19 ..      13      24 ..       7      28 .. 0.67
   2 !   16.9   0.0   3.1e-07    0.0055       5      57 ..      35      87 ..      31      89 .] 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.46
         rve  8 wqvDvtvvripd 19
                +q+ +t +++pd
  CDO69615.1 13 IQAKITRMPVPD 24
                666677777666 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.1e-07
         rve  5 gelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlaller 57
                g+++++D++  ++ + gg++y+++++dd++r++  ++ + +++a  ++++l++
  CDO69615.1 35 GDRIHTDTWASDVTSLGGNKYITTWTDDATRWTKMVPQKEKNQAFPAYKALKA 87
                78999****8888899999**************99999999888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 649.84
//
Query:       CDO69616.1  [L=816]
Description: hypothetical protein BN946_scf184851.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-65  220.8   0.0    2.9e-65  220.3   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
       0.97    9.8   5.3          2    8.9   5.3    1.4  1  CCDC53    Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   0.0   3.3e-69   2.9e-65       2     241 ..     329     570 ..     328     571 .. 0.97

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 3.3e-69
       RVT_2   2 tyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 ty+lv+   +   +g r+vf +k+d+  + +++karlvaqG++q++g+d++e+faPv +l+s+  +lal+a +++ + q+dv+sa+Ln+ ldee+y++q
  CDO69616.1 329 TYNLVEPLPNANIVGCRFVFHIKRDADgSITQFKARLVAQGYTQMPGVDFNETFAPVTKLSSICTILALTARYDWELEQMDVKSAYLNGRLDEEIYMRQ 427
                 99***9888999************9987889******************************************************************** PP

       RVT_2 100 PpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk 198
                 PpG+   + ++ v++L+k+lyGlkqa+  W++++ + ++++gf+   + + ++ +  g++ +iva  vddl iag+    + d+k  ++++f+++dlg 
  CDO69616.1 428 PPGSAPAGLKHLVCHLKKTLYGLKQAGHGWYKTLANGMAEMGFTCCASDHAVWYKRAGDSIVIVASSVDDLTIAGTR-DFVMDFKSAISARFEMSDLGA 525
                 *************************************************************************9875.67779**************** PP

       RVT_2 199 vskfLGieiaq..eaggiklsladyiakvvkkfeltdaktvatPl 241
                 +   LGie+++  +a  i +s++ yi  v+  f+l +a++v tPl
  CDO69616.1 526 MRWILGIEVQRdrQARMIAISQRTYIDTVAVRFNLETANPVSTPL 570
                 *********98667899***************************8 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.3   0.00022         2      32     114 ..     118     202 ..     112     216 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00022
      CCDC53  32 rleitlalLEakLsSipgleeveaeaaeastsddn.aarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeqeesesk..nvl 114
                 ++e +++ +E   +S+ ++e+v+ e+a+a + ++  + ++++p+p+p se+  a+++++e+s++++++++e+ee++++e++     
  CDO69616.1 118 TVERNVRFVEDEPDSV-KVEDVQLEGAKADRGEQLmSSTSPSPTPQPPSETLPATPPPSEPSPSQTNQDDEEEESAPPEEAagRGQ 202
                 5777777778888888.455555554443333322334444444444444444444444444444444444444444443333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5341.94
//
Query:       CDO69617.1  [L=323]
Description: hypothetical protein BN946_scf184851.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-10   40.9   0.0      5e-10   39.3   0.0    1.8  2  DDE_3            DDE superfamily endonuclease
    1.1e-06   28.8   0.0    5.4e-06   26.6   0.0    2.2  2  HTH_Tnp_Tc3_2    Transposase
  ------ inclusion threshold ------
       0.11   13.1   0.2        2.2    9.0   0.1    3.0  4  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   8.3e-14     5e-10       1     137 [.     128     273 ..     128     281 .. 0.81
   2 ?   -1.6   0.0      0.35   2.1e+03      95     126 ..     282     320 ..     278     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.3e-14
       DDE_3   1 rvvfiDEsgfqlgtvrrraw..akkGkr..er.leeygrrg..rvnligaldekgglafvtfeetlnaedfaeflerlletalqak.....kivlilDn 87 
                 rvvf DEs f+     ++ +   ++G+   ++ ++++ ++g  +v++ g l+ +g   ++ ++++lna++ ++ le+     l+        +++  Dn
  CDO69617.1 128 RVVFSDESIFKVFGSNGKQYcrRRTGEAlqPQnVKKTVKHGggKVTVWGCLTWNGPGQLYCIDGNLNAAQYVKILEDAFFGTLSDYglsisDVIFQQDN 226
                 699*****99998755555411566776653334443333357********************************9976666665466666777778** PP

       DDE_3  88 asiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrr 137
                  + H+s++ ++++++   +++ l +++ SP+ N+iE+ w++l ++++k r
  CDO69617.1 227 DPKHTSKTAEAFFQA--NNVKKLPWAASSPDMNIIENAWHHLDKQVRK-R 273
                 ***************..******************************9.4 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.35
       DDE_3  95 slrelveeeadrlellyl.......PpySPelNpiEivw 126
                 +l++++eee+ +l l y+       P   ++l   E +w
  CDO69617.1 282 QLWAALEEEWRKLDLGYIrwlyesmPNRVSDLCNSEGLW 320
                 678889999999988888888888888888888888888 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     9e-10   5.4e-06      32      72 .]      80     120 ..      67     120 .. 0.92
   2 ?   -1.9   0.0      0.67     4e+03      32      62 ..     133     163 ..     129     167 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 9e-10
  HTH_Tnp_Tc3_2  32 reTirrrLrkaglkkrkprkkplLskknrkaRLeFAkehln 72 
                     +T++r L ++gl++r    kp L+ ++++aR+++  eh n
     CDO69617.1  80 ESTVQRNLAEIGLHGRIRWAKPHLRDEHVAARYAWGIEHAN 120
                    69*************************************86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.67
  HTH_Tnp_Tc3_2  32 reTirrrLrkaglkkrkprkkplLskknrka 62 
                    +e i ++  ++g + ++ r    L+++n+k+
     CDO69617.1 133 DESIFKVFGSNGKQYCRRRTGEALQPQNVKK 163
                    5556666666777777777777788887775 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.52   3.1e+03      19      40 ..      11      32 ..       4      42 .. 0.80
   2 ?   -3.2   0.0       2.3   1.4e+04      78      91 ..      49      62 ..      45      62 .. 0.83
   3 ?   -0.2   0.0      0.27   1.6e+03      32      62 ..      97     136 ..      92     173 .. 0.76
   4 ?    9.0   0.1   0.00037       2.2      33      77 ..     224     269 ..     168     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.52
                     SEEEEEES-HHHHHHHHHHCCH CS
  Methyltransf_11 19 arvvgvDlskemlklakekase 40
                     a+ +g+D+s++ +++ak ++++
       CDO69617.1 11 ATEIGCDPSTARRNYAKLQKNP 32
                     6789999999999999887765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
                     HHHHHHHHHHEEEE CS
  Methyltransf_11 78 ekalkeiaRvLkpg 91
                     e+ l+++ R Lk+g
       CDO69617.1 49 ERGLRQAERSLKKG 62
                     67799999999997 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.27
                      HHHHHHCCHHT-.........EEEETTEECCCTSS-TT-E CS
  Methyltransf_11  32 klakekaseegl.........kvefvvadaeklpfednsf 62 
                      ++ak + ++e++         + ++ vad +++ f d+s+
       CDO69617.1  97 RWAKPHLRDEHVaaryawgieHANWTVADWSRVVFSDESI 136
                      6666666666666666666677778999999999999886 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00037
                      HHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCH CS
  Methyltransf_11  33 lakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedp 77 
                      + ++ +++++  +  f+  +++klp + +s D+ ++ +++hh++++
       CDO69617.1 224 QDNDPKHTSKTaEAFFQANNVKKLPWAASSPDMNIIENAWHHLDKQ 269
                      44444444444545579999***********************533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2206.26
//
Query:       CDO69618.1  [L=283]
Description: hypothetical protein BN946_scf184851.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.025   14.6   0.1      0.057   13.4   0.1    1.6  1  zinc_ribbon_6   Zinc-ribbon
      0.035   13.8   0.6      0.091   12.5   0.3    1.7  2  Ribosomal_S27e  Ribosomal protein S27


Domain annotation for each model (and alignments):
>> zinc_ribbon_6  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   6.3e-06     0.057      17      50 ..     243     281 ..     220     283 .] 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.3e-06
  zinc_ribbon_6  17 qpmpeeyknkkvkilCnDCekkse.....vkfhvlglkC 50 
                     ++ + ++++ ++i+C DC+k  +     v   +l +kC
     CDO69618.1 243 DRLQTTFSQAAQSITCADCQKMLHvhiwkVTTQWLAVKC 281
                    34558899999*********9876111124557777787 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3     1e-05     0.091      16      36 ..     245     265 ..     241     267 .. 0.91
   2 ?   -2.3   0.0      0.42   3.7e+03       3      10 ..     274     281 ..     273     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
                     EEEEESS-SS-EEESSSTCEE CS
  Ribosomal_S27e  16 etvvFshaatvvkCisCgkvL 36 
                      +++Fs+aa+ ++C  C k+L
      CDO69618.1 245 LQTTFSQAAQSITCADCQKML 265
                     59***************9988 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.42
                     --EEEEE- CS
  Ribosomal_S27e   3 skFldvkC 10 
                     +++l vkC
      CDO69618.1 274 TQWLAVKC 281
                     57899999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2116.63
//
Query:       CDO69619.1  [L=115]
Description: hypothetical protein BN946_scf184851.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-31  108.8   0.0    1.3e-31  108.8   0.0    1.0  1  DUF2015   Fungal protein of unknown function (DUF2015)


Domain annotation for each model (and alignments):
>> DUF2015  Fungal protein of unknown function (DUF2015)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0     7e-36   1.3e-31      28     112 .]      27     110 ..       1     110 [. 0.84

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 7e-36
     DUF2015  28 eylysrlpssFeedieaGlsssnFdlseNiesgdsRaGLdeaakeeikkimkkrrvkFdeARliyteerlkkngigpdGrPlDpk 112
                 +  y+ +  +F+e+++aGlsss+Fd+++Ni++gdsR GLde++++e+++im+++rv+Fd+ARli++++ l+++gi+p+G+PlD k
  CDO69619.1  27 AAHYQPV-ATFAEQADAGLSSSTFDIEANIREGDSRIGLDERGTQEVLDIMRRERVNFDQARLIRQNRILAAHGIDPSGMPLDAK 110
                 2337777.7**************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 813.48
//
Query:       CDO69620.1  [L=339]
Description: hypothetical protein BN946_scf184851.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-17   62.1   0.0    9.4e-17   61.3   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.9e-12   46.8   0.0    2.8e-12   46.2   0.0    1.4  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    2.5e-12   46.5   0.0    6.2e-11   41.9   0.0    2.1  2  NAD_binding_4   Male sterility protein
    2.7e-09   37.2   0.1    4.4e-09   36.5   0.1    1.3  1  NAD_binding_10  NAD(P)H-binding
    3.9e-09   36.4   0.0    5.6e-09   35.8   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    3.5e-05   23.5   0.1    5.4e-05   22.9   0.1    1.2  1  NmrA            NmrA-like family
    0.00043   19.8   0.1    0.00097   18.6   0.1    1.6  1  adh_short       short chain dehydrogenase
     0.0047   16.9   0.1      0.035   14.0   0.1    2.1  1  KR              KR domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   4.2e-20   9.4e-17       1     188 [.       9     216 ..       9     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 4.2e-20
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 +lVtGa+Gfi + +v+a+l++g  v g  r   + +  +l+++          +v  ++ ++ a++++++  ++dav+h      v+ +++dpa++i+ 
  CDO69620.1   9 VLVTGANGFIAAWTVNAFLDAGFAVRGTVRSVAKAE--HLKKTfgsygdkfeYIVVPNIEEDGAFDEAVQ--GIDAVVHT--ATPVNLTAQDPAELIDP 101
                 79********************99999999943333..33344689***88777888999999*******..********..557888889******** PP

                 HTHHHHHHHHHHHHH.TCTEEEEEEE.GGGGTSCSSSS............BSTCSTTS--.....--SSHHHHHHHHHHHHHHHHHHHHT....-EEEE CS
   Epimerase  91 nlqgtlnlleaarka.gvkrllflsS.sevYGkdaeqp............keettltgpl.....kpnspYaaaKlageklveayaaqyg....lnaii 166
                  l+gt++ll aa  +  vkr+++lsS ++v G++++ p              e+           ++   Y a+K+ +ek ++++ ++++    ++  +
  CDO69620.1 102 SLKGTMTLLRAAAGQrSVKRVVYLSScATVIGDVPSEPrtydetswneddILEVQ----EkgrnaHQLAKYRASKIFAEKRAWEFYEENKvslsWDLAV 196
                 **********999665999*******66789988886666666666322222333....234448999*********************97888899** PP

                 EEESEEESTTS-TTSTTSHHHH CS
   Epimerase 167 lrlfnlyGprngegevsrvipa 188
                 +++  ++Gp   +++v   i  
  CDO69620.1 197 VNPPLVIGPV--HHHVGEGIES 216
                 *********9..3333333333 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.2e-15   2.8e-12       1     150 [.      10     167 ..      10     271 .. 0.66

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.2e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk..viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTr 97 
                 +vtG+ GF+ +  v+++++++ +    v  +++ ++l++++ + + k   ++   + +    +ea++g+d+v+h+a+ v+++ ++  + + +  +kGT 
  CDO69620.1  10 LVTGANGFIAAWTVNAFLDAGFAVRGTVRSVAKAEHLKKTFGSYGDKFeyIVVPNIEEDGAFDEAVQGIDAVVHTATPVNLTAQDPAE-LIDPSLKGTM 107
                 69******************98444334455666666667777766656567779***************************966666.88899***** PP

   3Beta_HSD  98 nvleacv.kagvrvlvYtSsae.vvgp.....nslgeeilngdEeleyeslhqdaypesK 150
                 ++l a+  + +v+++vY Ss+  v+g+      ++ e   n d+ le++++  +a +  K
  CDO69620.1 108 TLLRAAAgQRSVKRVVYLSSCAtVIGDvpsepRTYDETSWNEDDILEVQEKGRNAHQLAK 167
                 ***8764389********997615564111112344444455555555555333333333 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.033        74       1      21 [.      11      31 ..      11      53 .. 0.75
   2 !   41.9   0.0   2.8e-14   6.2e-11      80     235 ..      70     234 ..      67     245 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.033
                   EE-TTSHHHHHHHHHHHHHS- CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttp 21
                   +TGa GF+++  ++  L+   
     CDO69620.1 11 VTGANGFIAAWTVNAFLDAGF 31
                   7**********9999998765 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 2.8e-14
                    HHHHHHHH--EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H........HHH--EEEETTT CS
  NAD_binding_4  80 dlqelaeevdviihsaAtvnfde.pykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeege..keekldederaklkg 171
                    +++e ++ +d+++h a  vn+++ +  el+++ ++Gt  +l+ a++ ++ k +++ S+ a+v g+  +e   ++y+e+   ++++l+ +e+ +++ 
     CDO69620.1  70 AFDEAVQGIDAVVHTATPVNLTAqDPAELIDPSLKGTMTLLRAAAGQRSVKRVVYLSScATVIGDVPSEP--RTYDETSwnEDDILEVQEKGRNAH 163
                    788999**************99747889*******************************99999999764..666666556667777777777777 PP

                    CCCHHHHHHHHHHHHHHHHHHHH---....EEEEEE-EEE-...-SSST---TTSHHHHHHHHHHHH-EEE CS
  NAD_binding_4 172 lpntYeqsKalaEklvrearrrsglp....vvivRpsiitg...esktGwingsdlgirgllgliakgvlp 235
                       +Y  sK  aEk   e  +++++     +++v p+ ++g   + +   i++ +   ++l+++  kg ++
     CDO69620.1 164 QLAKYRASKIFAEKRAWEFYEENKVSlswdLAVVNPPLVIGpvhHHVGEGIESLNASNQLLFAALTKGEYT 234
                    778***************99998887444459*********996444446777787888888888888776 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   1.9e-12   4.4e-09       1     111 [.      13     141 ..      13     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.9e-12
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.....CTTTCE.EEE--TT-CCHHHHHHTT-SEEEES-......--TCCHHHH...... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele.....aeegle.vvegdvtdvedlaealkgadaVvsal......ggggkdeeg...... 77 
                     GA+G ++   v+  l++ g++v+  vR+ +k+++l+       ++ e +v+ ++++  +  ea++g+daVv ++      + +            
      CDO69620.1  13 GANGFIAAWTVNAFLDA-GFAVRGTVRSVAKAEHLKktfgsYGDKFEyIVVPNIEEDGAFDEAVQGIDAVVHTAtpvnltA-Q-----Dpaelid 100
                     9****************.5*********99999887333332245553677799*******************95554421.2.....1223445 PP

                     .....HHHHHH.HHHHCT--EEEEEEETTT.TSGCGCHHHH CS
  NAD_binding_10  78 .....aknivd.aakeagvkRfvlvsaigv.gdevpgefge 111
                          + ++++ aa +  vkR+v++s+  +   +vp+e  +
      CDO69620.1 101 pslkgTMTLLRaAAGQRSVKRVVYLSSCATvIGDVPSEPRT 141
                     555666666651667899********965313345554433 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.5e-12   5.6e-09       1     144 [.      10     145 ..      10     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.5e-12
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEE.EEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlk.lhkgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    L+TG +Gfi +++++ +l+ g+ v g+vr  ++  ++++++      + + ++++ ++  ++++  + +++++ +  d+v++ A    V+   ++P
     CDO69620.1  10 LVTGANGFIAAWTVNAFLDAGFAVRGTVRSVAK--AEHLKKTFG---S-YGDKFEyIVVPNIEEDGAFDEAVQGI--DAVVHTAT--PVNLTAQDP 95 
                    9*************************9986554..445555544...3.345555377789************98..9****996..688999*** PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS..B-TT CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevp..qtEt 144
                    ++ ++  + Gt++LL a+       k  +y +S ++v G+v + p  ++Et
     CDO69620.1  96 AELIDPSLKGTMTLLRAAAGQRSV-KRVVYLSSCATVIGDVPSEPrtYDET 145
                    ******************877654.566899999*******9877223444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   2.4e-08   5.4e-05       1     101 [.       9     126 ..       9     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.4e-08
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTE...EEES-TT-HHHHHHHHTT-SEEEE---GG...........S-HHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGve...lvkgdlddkeslvealkgvdvvfsvtgfy...........skeiedgk 83 
                 +lv+Ga G +++  v+a+l+ag+ vr  vR +   ++l k++ + G +   +v  +++++   +ea++g d+v  + +             +  ++  +
  CDO69620.1   9 VLVTGANGFIAAWTVNAFLDAGFAVRGTVRSVakAEHLKKTFGSYGDKfeyIVVPNIEEDGAFDEAVQGIDAVVHTATPVnltaqdpaeliDPSLKGTM 107
                 79*****************************986556667888888653326799****************9887665444888888777777777788 PP

                 HHHHHHHHHS.-SEEEEEE CS
        NmrA  84 klvdAakeaG.vkhfiySs 101
                 +l +Aa+    vk+++y s
  CDO69620.1 108 TLLRAAAGQRsVKRVVYLS 126
                 8888888887899999854 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   4.3e-07   0.00097       3     139 ..       9     130 ..       7     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.3e-07
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-.TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqv.DvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 vlvtGa + I   ++++++ +G+ v  + rs +k+e+++k +++ g+k+ +i v ++++  + +++v+       ++d++v+ A+        +l++++
  CDO69620.1   9 VLVTGANGFIAAWTVNAFLDAGFAVRGTVRSVAKAEHLKKTFGSYGDKFEYIVVpNIEEDGAFDEAVQ-------GIDAVVHTATP------VNLTAQD 94 
                 9********************************************99999887636776666666665.......55888888887......5788888 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvag 139
                   ++i+  l+g++ l ra++ +   +s  r+v  sS a+
  CDO69620.1  95 PAELIDPSLKGTMTLLRAAAGQ---RSVKRVVYLSSCAT 130
                 8888888888888888888777...66777777777665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.5e-05     0.035      82     143 ..      78     134 ..       7     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 --EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT.S--SEEEEEEEHHHHH-- CS
          KR  82 ikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled.esldffvlfSSiagllgs 143
                 i  v+h+A      +  ++ta+d ++++ p +kG+  L ++ +  +s++ +v++SS+a+++g 
  CDO69620.1  78 IDAVVHTA------TPVNLTAQDPAELIDPSLKGTMTLLRAAAGqRSVKRVVYLSSCATVIGD 134
                 44555555......445899***************99888776659***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2356.03
//
Query:       CDO69621.1  [L=453]
Description: hypothetical protein BN946_scf184851.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-05   24.8   0.1    3.1e-05   23.7   0.1    1.5  1  F-box       F-box domain
      5e-05   23.3   0.0    9.1e-05   22.5   0.0    1.4  1  MIT         MIT (microtubule interacting and transport) domai
    0.00016   21.5   0.1    0.00039   20.2   0.1    1.7  1  F-box-like  F-box-like
    0.00079   19.1   1.2      0.026   14.2   0.0    2.7  3  TPR_11      TPR repeat
  ------ inclusion threshold ------
       0.01   15.9   0.2      0.036   14.2   0.2    2.0  1  TPR_2       Tetratricopeptide repeat
       0.03   14.1   0.1      0.077   12.8   0.1    1.7  1  TPR_1       Tetratricopeptide repeat
      0.046   13.6   0.0       0.08   12.8   0.0    1.3  1  F-box_4     F-box
        0.1   13.4   2.8       0.11   13.4   0.4    2.4  2  TPR_14      Tetratricopeptide repeat
        0.2   11.7   3.4       0.85    9.8   0.2    3.4  4  TPR_7       Tetratricopeptide repeat
       0.23   11.4   1.1          4    7.4   0.1    2.5  2  TPR_10      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.8e-08   3.1e-05       2      44 ..     221     263 ..     220     265 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.8e-08
                 HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwc 44 
                 +l r+P+evl  IL+rL+++ + +++r S++ r ++ + ++w+
  CDO69621.1 221 PLNRVPDEVLVMILQRLDHTAIERFARASRKARVITLDASIWR 263
                 689******************************9988877775 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.1e-08   9.1e-05       1      30 [.      95     124 ..      95     127 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.1e-08
         MIT   1 ldkAlelvkkAveeDnagnyeeAlelYkea 30 
                 l++A+e+ +kAv+ +++g+ ++Al+lY++a
  CDO69621.1  95 LQRAVEVYRKAVQHEQQGELDDALRLYRTA 124
                 89**************************98 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.2e-07   0.00039       2      45 ..     223     265 ..     222     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.2e-07
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrl 45 
                 +r PdE+L+ I+++L+ + + r a+ +r+ r ++ld  ++Wr +
  CDO69621.1 223 NRVPDEVLVMILQRLDHTAIERFARASRKARVITLDA-SIWRPM 265
                 578********************************99.***965 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.04        71      11      22 ..      96     107 ..      94     110 .. 0.86
   2 !   14.2   0.0   1.4e-05     0.026       6      33 ..     110     137 ..     108     138 .. 0.96
   3 ?   -3.1   0.0       3.6   6.5e+03      23      32 ..     390     399 ..     390     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.04
      TPR_11  11 eeAieaYkkAlk 22 
                   A+e+Y+kA++
  CDO69621.1  96 QRAVEVYRKAVQ 107
                 67********97 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.4e-05
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayyn 33 
                 +qG++++A+  Y++A + d++  +ayy 
  CDO69621.1 110 QQGELDDALRLYRTAFRMDNNVDRAYYL 137
                 8*************************96 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.6
      TPR_11  23 ldPdnaeayy 32 
                 ldP  ++  y
  CDO69621.1 390 LDPATPDTRY 399
                 8******988 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2     2e-05     0.036       5      33 ..     102     130 ..      98     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 y+ +  ++++g++++Al++++ A + d n
  CDO69621.1 102 YRKAVQHEQQGELDDALRLYRTAFRMDNN 130
                 89999******************998865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.3e-05     0.077       5      31 ..     102     128 ..      96     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALeln 31 
                 y++++ + ++g++d+Al  y+ A + +
  CDO69621.1 102 YRKAVQHEQQGELDDALRLYRTAFRMD 128
                 89*******************997766 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-05      0.08       4      49 ..     221     266 ..     218     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
     F-box_4   4 sLssLPlevlqhiaslLDsfsLsqLslvskllrevcssllqergiV 49 
                  L+++P evl  i++ LD +++ ++++ s++ r ++  +   r +V
  CDO69621.1 221 PLNRVPDEVLVMILQRLDHTAIERFARASRKARVITLDASIWRPMV 266
                 6899***************************998876665555555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4     6e-05      0.11       5      40 ..     102     137 ..      98     138 .. 0.86
   2 ?   -3.9   0.1        10   1.8e+04      19      29 ..     240     250 ..     233     252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-05
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawll 40 
                 ++ a  ++++G++d+A++l+r a + + + ++a++l
  CDO69621.1 102 YRKAVQHEQQGELDDALRLYRTAFRMDNNVDRAYYL 137
                 5667789****************9999988888876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 10
      TPR_14  19 eAiallrrala 29 
                 +Ai+ + ra +
  CDO69621.1 240 TAIERFARASR 250
                 57777777755 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.2     4e+03      14      30 ..      11      25 ..       7      34 .. 0.77
   2 ?   -0.1   0.0      0.67   1.2e+03      16      27 ..      96     105 ..      95     107 .. 0.85
   3 ?    9.8   0.2   0.00047      0.85       9      33 ..     108     130 ..     104     133 .. 0.88
   4 ?   -2.7   0.0       4.7   8.3e+03      14      23 ..     326     335 ..     326     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.2
       TPR_7 14 dyeeAielyeqsLaltk 30
                + ee++++ +q   l++
  CDO69621.1 11 EPEELVRFRQQ--WLEE 25
                67999****99..7764 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.67
       TPR_7  16 eeAielyeqsLa 27 
                 ++A+e+y++  a
  CDO69621.1  96 QRAVEVYRK--A 105
                 79*****99..4 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00047
       TPR_7   9 ysrlGdyeeAielyeqsLaltkdpe 33 
                 ++++G+ ++A++ly+   a++ d +
  CDO69621.1 108 HEQQGELDDALRLYRT--AFRMDNN 130
                 899*************..9998876 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 4.7
       TPR_7  14 dyeeAielye 23 
                 +y+ +i++y+
  CDO69621.1 326 NYSHLITYYR 335
                 68889***97 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.072   1.3e+02      25      39 ..      95     109 ..      94     110 .. 0.83
   2 ?    7.4   0.1    0.0022         4      14      30 ..     110     126 ..     108     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.072
      TPR_10  25 leealairrrllGpd 39 
                 l++a++++r+++ ++
  CDO69621.1  95 LQRAVEVYRKAVQHE 109
                 589999999999875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0022
      TPR_10  14 qrgrydeAealleeala 30 
                 q+g++d+A++l++ a +
  CDO69621.1 110 QQGELDDALRLYRTAFR 126
                 8************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3160.76
//
Query:       CDO69622.1  [L=456]
Description: hypothetical protein BN946_scf184851.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-27   94.9   0.1    6.7e-27   93.8   0.1    1.5  1  DUF1977   Domain of unknown function (DUF1977)
    2.5e-25   88.4   0.5    7.2e-25   86.9   0.5    1.8  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.073   13.2   0.1       0.34   11.1   0.1    2.2  2  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF1977  Domain of unknown function (DUF1977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   1.1e-30   6.7e-27       4     104 ..     336     450 ..     331     451 .. 0.92

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 1.1e-30
     DUF1977   4 ksdPsysfeksskytverttsnlkvpYyVnpaevskyss............kklrklekeveeeyvqnlraeCerekeqkerlieraqgwf..gtdeek 88 
                 ++dP++sf++s++y+vertt++l+v+Y+Vn ae+s ++             ++lrk+e+++e+ y+q+l a+C+r  ++k+r+ +++ g+f  gtd+ek
  CDO69622.1 336 TPDPHFSFQPSTRYNVERTTNDLHVKYHVNAAEFSGHPIaaelarnenqpgPQLRKFETNIERAYTQDLFAQCQRGLDRKQRRKDQEVGLFgiGTDWEK 434
                 689**********************************5257788887777777************************************99999***** PP

     DUF1977  89 lekaekmklpsCeeLk 104
                 ++k+++++++sCe+Lk
  CDO69622.1 435 VRKIDEEPVESCEKLK 450
                 ***************8 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.5   1.2e-28   7.2e-25       1      63 []     142     203 ..     142     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1.2e-28
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 +yYeiL +++d++e++IkkaYrklal +HPDkn + p a+e+Fk +++A++vLsdp+kR++YD
  CDO69622.1 142 EYYEILSLKRDCDEADIKKAYRKLALALHPDKN-GAPGADEAFKMVSKAFQVLSDPQKRAAYD 203
                 59*******************************.****************************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.42   2.5e+03      16      25 ..       4      13 ..       4      18 .. 0.76
   2 ?   11.1   0.1   5.6e-05      0.34       4      31 ..      11      38 ..       8      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.42
       TPR_2 16 dyeeAleafe 25
                + +eAl+++ 
  CDO69622.1  4 NKDEALKCLA 13
                6799999985 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.6e-05
       TPR_2  4 lynlGlayyklgdyeeAleafekAleld 31
                + ++++ ++ +g+y+ A+++++k+l l 
  CDO69622.1 11 CLAIAQKHRSAGNYASAKRFCQKSLTLF 38
                5678999******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3110.19
//
Query:       CDO69623.1  [L=537]
Description: hypothetical protein BN946_scf184851.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-09   37.2   6.0       0.81   10.7   0.2    5.8  6  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00088        16      13      36 ..      32      55 ..      17      57 .. 0.80
   2 !    7.1   0.0   0.00059        10      21      38 .]     103     119 ..      73     119 .. 0.79
   3 !    8.0   0.1   0.00031       5.6       9      38 .]     172     201 ..     165     201 .. 0.85
   4 ?   -3.6   0.0         1   1.8e+04      23      35 ..     238     249 ..     226     250 .. 0.56
   5 !   10.7   0.2   4.5e-05      0.81      11      38 .]     283     309 ..     274     309 .. 0.89
   6 ?    2.7   0.1     0.015   2.7e+02      15      38 .]     345     367 ..     315     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00088
                EEEEEEETTSSEEEEEETTSEEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvri 36
                ++ + f++ g++la+G++ g v +
  CDO69623.1 32 ISTVEFDSTGNYLATGDKGGRVVL 55
                57888***********98777766 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00059
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 + ++l+s   D+t+++W+
  CDO69623.1 103 SAHFLLSTN-DKTIKLWK 119
                 446689766.*******6 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00031
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H  +++s+++++d+  ++s++ D  + +W+
  CDO69623.1 172 AHaYHIHSISVNSDQETFISAD-DLRINLWN 201
                 67556************99877.*******8 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1
                 SEEEEEETTSEEE CS
        WD40  23 awlasGsdDgtvr 35 
                  ++ s+s + +++
  CDO69623.1 238 LFMYSSS-KSNIK 249
                 2345777.77777 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 4.5e-05
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ss+++++fs+dg++++ + d  +++iWd
  CDO69623.1 283 SSISDVKFSHDGRYIL-SRDYLNLKIWD 309
                 46999***********.799*******9 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.015
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 ++ +s d + +++Gs+ +  ri+d
  CDO69623.1 345 CV-WSGDDKQVLTGSYHNYFRIFD 367
                 44.999999999***988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3724.90
//
Query:       CDO69624.1  [L=1206]
Description: hypothetical protein BN946_scf184851.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-26   92.6   0.0      5e-26   91.7   0.0    1.4  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   2.8e-30     5e-26      84     317 ..     276     552 ..     264     562 .. 0.74

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2.8e-30
     Plavaka  84 rvysemmtgdwaweqq.......ie.ek.ptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpi.........pk 164
                 r++++++  d a +          + e+ p    +++p++++sD T+l+ f g+ + +P+Y+  G + k vr  +++ a   +ay+p           +
  CDO69624.1 276 RIFTDIYNSDAALHEFeairnrpRNpEDaPDVEYVMAPLMFWSDATHLTSF-GSASLWPIYMYFGALLKYVRGMPTEFAAHHVAYIPSlpdelqdyyMH 373
                 556666555555544444333331212224567899***************.***********************************998666655433 PP

     Plavaka 165 lkkikkskefrklfkrqlfHaclarile.pLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvaci...vqgwCpkctakkkel...gdl.ees 255
                 +  ++ s++  + +kr+l+ +    +l+    +a ++g+ ++c+dg++rr++p +  y aDypE++l+++    +++ Cp+c ++k+++   g++ + +
  CDO69624.1 374 VYGTTISADILTFCKRELMQKIWLLLLDdEFLNAYENGILVHCGDGVTRRIFPRILTYSADYPEKILLTALkplSKHPCPRCLVSKDHIclaGTPdDMH 472
                 33334567777777777777776666642568999***********************************95556889*********986664432222 PP

     Plavaka 256 elrtre.etlelleeaade...............lkklwkeyglkgviepFwedlpra..dihelltpDlLHqlikgvfk 317
                 ++r+++ e + +l+++ ++                ++l+++  l++++  F ++l r   + ++l++pDl+H++  gv+k
  CDO69624.1 473 DRREKQrEDTPALRRVIKRarkllfqgaslgskrIQNLLDSRSLNPIQSAFSTRLARFglNHYHLFAPDLMHEFELGVWK 552
                 2222220222233444333456899999999999999*******************9534899*********97655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 8181.95
//
Query:       CDO69625.1  [L=458]
Description: hypothetical protein BN946_scf184851.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 2546.96
//
Query:       CDO69626.1  [L=775]
Description: hypothetical protein BN946_scf184851.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    8.8   5.2       0.84    9.5   2.5    2.0  2  DUF3487   Protein of unknown function (DUF3487)


Domain annotation for each model (and alignments):
>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5   4.7e-05      0.84      29      78 ..     237     286 ..     232     307 .. 0.86
   2 ?   -3.4   0.0       0.5     9e+03      59      79 ..     456     476 ..     446     508 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 4.7e-05
     DUF3487  29 aglglvvglvlglllallvgslaliptialllvllvvlvggkllarlKRg 78 
                 + ++l+++l+  l+l+++++  ++++ ++l++vl+ v++g ++l  ++R+
  CDO69626.1 237 LQISLLLFLAGLLVLLWTLNLGVFGVVCGLMVVLACVFIGTTILPLMRRD 286
                 5667777777677888899999*************************997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.5
     DUF3487  59 llvllvvlvggkllarlKRgk 79 
                 +  +l+ +v  ++++ lKR +
  CDO69626.1 456 ARTVLWAIVLRSMIKLLKRKQ 476
                 555666667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.54
# Mc/sec: 4302.62
//
Query:       CDO69627.1  [L=500]
Description: hypothetical protein BN946_scf184851.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-19   68.8   4.3    5.2e-19   68.8   4.3    2.3  3  RED_N     RED-like protein N-terminal region


Domain annotation for each model (and alignments):
>> RED_N  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   4.3   2.9e-23   5.2e-19      16     134 ..      61     170 ..      44     204 .. 0.79
   2 ?   -2.2   1.2      0.14   2.5e+03      35      73 ..     236     274 ..     222     278 .. 0.62
   3 ?   -3.6   0.7      0.38   6.7e+03     111     124 ..     452     465 ..     442     491 .. 0.50

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 2.9e-23
                 XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       RED_N  16 keeelaekYrDRAkERRegknadyekedalsetaayravapdaksgldaaerrkqaiqeskylGGDmehThLvKGLDyaLLqkvrseikkkeeeeeeee 114
                 k+  + e YrDRA ERR g  +dy         a+  a+a + +     +  rk   ++ kylGGD ehT LvKGLD+aLL++ r+ + ++ e  e+  
  CDO69627.1  61 KKGGKGEAYRDRASERRLGVGNDY---------AQVEALAEEFEKRHADSADRKAVDEKRKYLGGDSEHTVLVKGLDFALLEQARARVAAEVEATEDVS 150
                 55566789*************9*9.........5578899999999999999999*********************************99988877776 PP

                 XXXXXXXXXXXXHHHHHCS- CS
       RED_N 115 ekelekkaeeekekekekee 134
                  +++  ++  + +k++++e 
  CDO69627.1 151 LEQAYLESVTQPKKRTREEI 170
                 33333333333344333333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.14
                 XX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       RED_N  35 knadyekedalsetaayravapdaksgldaaerrkqaiq 73 
                 + +++ ++++  + a+  a apd++ + d  +++k a+q
  CDO69627.1 236 ELEENGERKKKRKVASSSAAAPDTQLQGDRQDASKPAVQ 274
                 334444455556677777778887777777776666655 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.38
                 XXXXXXXXXXXXXX CS
       RED_N 111 eeeeekelekkaee 124
                 e+++++ ++k++++
  CDO69627.1 452 EKAAKRRARKEKKK 465
                 22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1352  (0.0754086); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 2677.45
//
Query:       CDO69628.1  [L=498]
Description: hypothetical protein BN946_scf184851.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 2753.35
//
Query:       CDO69629.1  [L=428]
Description: hypothetical protein BN946_scf184851.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-55  185.0   0.0      1e-54  184.6   0.0    1.2  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   0.0   5.9e-59     1e-54       1     159 []     219     404 ..     219     404 .. 0.93

  Alignments for each domain:
  == domain 1  score: 184.6 bits;  conditional E-value: 5.9e-59
                 EEEEEEEEEEE-TTT..--SS-SGGG-EEEEEEEEHHHHHHHHHHS--GGGB-SSEEEEEEETT-.-SSTTSHHHHS-EEEEEEE-----HHHHHHHHH CS
        IF4E   1 pLkskWtlwfdsksk..sksenyeeslkkvatfstveeFwslynnlkkpsklkvksdyhlFkkgi.kPmWEdpankkGGkwvirlkkkekldrlWeell 96 
                 pL+++W++wf+++++  +k +nyee++kk++ fs+ve+Fwsl++++++ps+l +++dy lF++gi +P+WEdp n +GGkw+irl+k +++drlWe+l+
  CDO69629.1 219 PLRNTWVFWFRQQRPpgNKITNYEEGIKKISAFSSVESFWSLWTHVHPPSSLLPTTDYLLFHSGIrRPVWEDPLNLSGGKWIIRLRK-GVADRLWEDLV 316
                 79********5444459************************************************99*******************9.99********* PP

                 HHHHTT-SS--..........................-SEEEEEEEE-SSEEEEEEEES-TT-HHHHHHHHHHHHHT--------EEE CS
        IF4E  97 laligeqleee.........................edeicGvvvsvRkkedrisiWtrdasdeekvekigeklkevlelpeekkley 159
                 la+ig+q++                           + eicG+++svR++ed+is+W+r++ + +++eki++++++vl+lp+++ +ey
  CDO69629.1 317 LAVIGDQFDGVadgtesengghqqqqadaegippgeWPEICGCTISVRQNEDIISLWNRHDGNAKSKEKIKDTIRRVLNLPPTTVMEY 404
                 ********99999999998888887777776666655**********************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1379  (0.0769145); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.36s 00:00:01.06 Elapsed: 00:00:00.52
# Mc/sec: 2473.77
//
Query:       CDO69630.1  [L=334]
Description: hypothetical protein BN946_scf184851.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-52  176.8   6.6      6e-52  176.3   6.6    1.2  1  Kei1      Inositolphosphorylceramide synthase subunit Kei1
  ------ inclusion threshold ------
      0.033   14.2   0.3       0.11   12.5   0.3    1.9  1  ALF       Short repeats of unknown function


Domain annotation for each model (and alignments):
>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   6.6   6.7e-56     6e-52       1     189 [.      16     189 ..      16     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 6.7e-56
        Kei1   1 sflgilsLqtGaelilllallNKvaGlYGlLalltGaplsflqlsmylySllvlvllalllphirkesplkilllavlYllDtvistaytvlFavdWfl 99 
                 sflg+l+L+tG++++ll+allNKvaG+YGl+a+ltGa  s++qls+ylyS+l lv+l+++l++  +e++ + l++a+l+++D+++sta+ v+F+v+W++
  CDO69630.1  16 SFLGFLDLKTGVTIALLFALLNKVAGVYGLIAVLTGAGGSAAQLSLYLYSVLGLVALTWGLKATLNEDAKQSLYFAHLFFADHILSTAWLVFFGVVWWI 114
                 8************************************************************************************************** PP

        Kei1 100 vleehdaaaaastagsasaeatagatapaavssaasatsasvsaatssslasavlqqEsaasiiiivllllvriYfalvllsyarqllkq 189
                 + ++hd++ +a   +s+++++ ++  a +           ++++a+++++a+++++ E++++ ++iv+ +l +iYfa +l+sya +l+k+
  CDO69630.1 115 Y-TPHDGRVQA---NSDAQKEVMESGAGH-----------NMTDAERAAAAMTIWNAEKGIASTMIVVGWLAKIYFAALLYSYAIHLRKG 189
                 *.9****9999...789999998888888...........89999******************************************986 PP

>> ALF  Short repeats of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.2e-05      0.11      17      35 ..     210     228 ..     201     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
         ALF  17 aAAqaALdaGtpaalraFL 35 
                 a A aAL +G+++++++F 
  CDO69630.1 210 AYASAALPDGDDDDVEEFY 228
                 789****88*********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2135.75
//
Query:       CDO69631.1  [L=188]
Description: hypothetical protein BN946_scf184851.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   18.5   0.0      0.002   18.2   0.0    1.3  1  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-07     0.002       2      82 ..      28     107 ..      27     148 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-07
                 EEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHH.HHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TT CS
        ACPS   2 vGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeear.aelfarlWaaKEAllKalgpglrklldfksievledst 82 
                 +Gi i ++s+ +  + ++ a  l + +t+ Er  ++ ++ e+   + ++++ a+K A+lKa+g  +   +d+ ++e+   ++
  CDO69631.1  28 IGIGIKEISAPPGMSGQDFAISLYHKLTPLERTFIAPEQGEEVvMRRLCVILALKQAYLKAIGQPI--GFDWSRLEFNVPEK 107
                 5666666666666644444444445599999999999555555689********************..88888877765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1285.24
//
Query:       CDO69632.1  [L=527]
Description: hypothetical protein BN946_scf184851.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3769.09
//
Query:       CDO69633.1  [L=289]
Description: hypothetical protein BN946_scf184851.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-33  112.7   4.4    2.1e-17   62.6   0.3    3.0  3  PQ-loop          PQ loop repeat
    1.5e-06   29.1   4.0    3.8e-05   24.5   0.5    2.5  3  ER_lumen_recept  ER lumen protein retaining receptor
  ------ inclusion threshold ------
      0.011   15.7   6.9       0.72    9.9   0.5    2.9  3  MtN3_slv         Sugar efflux transporter for intercellular e
       0.13   11.8   0.8       0.59    9.7   0.1    2.4  3  TMEM100          Transmembrane protein 100
       0.39   10.8   3.8       0.51   10.4   0.0    2.5  3  PgaD             PgaD-like protein
        2.7    7.4   4.6        0.4   10.1   0.2    1.8  3  DUF3087          Protein of unknown function (DUF3087)


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.3   7.1e-21   2.1e-17       3      60 ..       9      66 ..       7      67 .. 0.96
   2 ?   -0.2   0.0      0.28   8.4e+02      24      43 ..      87     106 ..      85     121 .. 0.79
   3 !   49.8   0.5     7e-17   2.1e-13       3      57 ..     132     186 ..     130     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 7.1e-21
     PQ-loop  3 eilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpps 60
                ++lg+i++v+w v++iPQi+k +++kSteGlS + +l+w +++++  +y i+++ +++
  CDO69633.1  9 NALGTIGTVCWTVQLIPQIWKSWRTKSTEGLSEWLVLIWGFSGVTMGVYVIIEDLNIP 66
                78**************************************************999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
     PQ-loop  24 NykrkSteGlSilflllwll 43 
                  y rk t  +S+ ++   l+
  CDO69633.1  87 HYERKRTRTVSVAMYAAVLV 106
                 59999999999999877665 PP

  == domain 3  score: 49.8 bits;  conditional E-value: 7e-17
     PQ-loop   3 eilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngf 57 
                 +++g++s vl +++++PQ++++yk+k ++G+S+ f++ ++lG+++s l+l ++ +
  CDO69633.1 132 QFFGIFSSVLIALALLPQYWEIYKHKEVVGISVMFMFVDMLGGVFSDLSLAFKTQ 186
                 79*******************************************9888877665 PP

>> ER_lumen_recept  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.01        31     106     146 ..      20      60 ..       7      61 .. 0.87
   2 !   24.5   0.5   1.3e-08   3.8e-05      57     132 ..      83     169 ..      67     182 .. 0.70
   3 ?   -2.6   0.0         3   8.9e+03      32      42 ..     195     204 ..     175     215 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
  ER_lumen_recept 106 svAilPQlillqktgevesltshyvfalglyRalyllnWiv 146
                      +v ++PQ++   +t++ e l    v+++g++ + + ++ i+
       CDO69633.1  20 TVQLIPQIWKSWRTKSTEGLSEWLVLIWGFSGVTMGVYVII 60 
                      7889**************************99988888775 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.3e-08
  ER_lumen_recept  57 kfketyekekDtfkle.......llivpslllallfhpg.....ssktllevlwtfsiiLesvAilPQlillqktgevesltshyvfa 132
                        ++ ye+++ t  ++       l++++ + ++++f  +      +   ++++ +fs +L ++A+lPQ++ ++k +ev  +   ++f+
       CDO69633.1  83 AQCQHYERKR-TRTVSvamyaavLVLSAGFEVGMIFAVKpaynsGNTRPVQFFGIFSSVLIALALLPQYWEIYKHKEVVGISVMFMFV 169
                      3344555555.22222212243334444444446666667898888999********************************9999986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3
  ER_lumen_recept  32 islyntlmkia 42 
                      +s + ++m+ +
       CDO69633.1 195 YS-LVVVMDGV 204
                      11.12233333 PP

>> MtN3_slv  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   0.00024      0.72      19      68 ..      24      75 ..      10      88 .. 0.75
   2 ?   -1.9   0.0       1.2   3.6e+03      27      44 ..      89     106 ..      83     111 .. 0.63
   3 ?    8.4   0.5   0.00074       2.2       4      47 ..     132     175 ..     129     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
    MtN3_slv 19 lsilrkiikkksveelsfllflagllsallWllYGllkkda..liiivNlvg 68
                +++++k +++ks+e+ls +l+l+  +s+++  +Y +  + +  li  + l+g
  CDO69633.1 24 IPQIWKSWRTKSTEGLSEWLVLIWGFSGVTMGVYVIIEDLNipLILQPHLFG 75
                789999*********************9999999776543334555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
    MtN3_slv  27 kkksveelsfllflagll 44 
                 ++k + ++s++++ a l+
  CDO69633.1  89 ERKRTRTVSVAMYAAVLV 106
                 566667777766665554 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00074
    MtN3_slv   4 gllcvvftvavFlsPlsilrkiikkksveelsfllflagllsal 47 
                  +++++++v+  l+ l++ ++i+k k+v ++s++ +++ +l+++
  CDO69633.1 132 QFFGIFSSVLIALALLPQYWEIYKHKEVVGISVMFMFVDMLGGV 175
                 678999****************************9999999876 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.57   1.7e+03     103     112 ..      15      24 ..      10      40 .. 0.65
   2 ?   -1.5   0.0       0.6   1.8e+03      86      95 ..     100     109 ..      63     128 .. 0.69
   3 ?    9.7   0.1    0.0002      0.59      68     115 ..     173     222 ..     152     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.57
     TMEM100 103 savCWkvrrr 112
                  +vCW v+  
  CDO69633.1  15 GTVCWTVQLI 24 
                 689**99864 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.6
     TMEM100  86 svlglvLLsa 95 
                  + ++++Lsa
  CDO69633.1 100 MYAAVLVLSA 109
                 2333444444 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0002
     TMEM100  68 Gvvvtavaytfnshgsvisvl..glvLLsaGlvllassavCWkvrrrrkk 115
                 G v    + +f ++  vi  +  +lv++  G+vl+ +  +  ++rrrrk+
  CDO69633.1 173 GGVFSDLSLAFKTQFDVIAAItySLVVVMDGVVLICAMILNPRARRRRKR 222
                 4455667889999999998653389999*********9999999999965 PP

>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.7      0.34     1e+03      40      86 ..      60     109 ..      24     112 .. 0.50
   2 ?   -0.1   0.1       0.3   8.8e+02      60      97 ..     123     156 ..      96     162 .. 0.65
   3 ?   10.4   0.0   0.00017      0.51      51     108 ..     170     224 ..     157     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.34
        PgaD  40 awllglelfeaeillglfseasasevegslsele...tlrlYalilvvia 86 
                 ++ l++ l+ +  l g++s  s  + ++++ + +   ++++Ya++lv+ a
  CDO69633.1  60 IEDLNIPLILQPHLFGALSYLSWAQCQHYERKRTrtvSVAMYAAVLVLSA 109
                 44445555555555555555555555555444331114556666666655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
        PgaD  60 asasevegslseletlrlYalilvviavlLilWaklnr 97 
                 ++    +g + +++ +++++ +l+++a+l   W  +++
  CDO69633.1 123 YN----SGNTRPVQFFGIFSSVLIALALLPQYWEIYKH 156
                 33....33344568888888888888888888888875 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00017
        PgaD  51 eillglfseasasevegslseletlrlYalilvviavlLilWaklnrvrfkakkrrvk 108
                 ++l g+fs+ s+  + ++  ++ + ++Y+l++v+ +v+Li  + ln +  +++kr  +
  CDO69633.1 170 DMLGGVFSDLSLAFKTQF--DVIAAITYSLVVVMDGVVLICAMILNPRARRRRKRL-E 224
                 566677777777766666..5556679*******************9944444333.3 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       3.1   9.3e+03      49      63 ..      45      59 ..      39      64 .. 0.79
   2 ?   10.1   0.2   0.00013       0.4      12      79 ..      90     159 ..      83     164 .. 0.82
   3 ?   -1.4   0.1      0.48   1.4e+03      22      67 ..     164     211 ..     152     219 .. 0.53

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.1
     DUF3087 49 fhlnllGvvlalvlt 63
                + + + Gv +++ ++
  CDO69633.1 45 LIWGFSGVTMGVYVI 59
                678899999998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00013
     DUF3087  12 rkklnrvivalvallavlsllfstllialfg..eeevsnfhlnllGvvlalvltaailrklktkpfmaev 79 
                 rk++++v va+ a+ +vls  f   +i   +   ++++   ++++G++ ++++ +a+l ++++    +ev
  CDO69633.1  90 RKRTRTVSVAMYAAVLVLSAGFEVGMIFAVKpaYNSGNTRPVQFFGIFSSVLIALALLPQYWEIYKHKEV 159
                 999****************99998888776633455557789******************9987666666 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.48
     DUF3087  22 lvalla.vlsllfstllialfgeeevs.nfhlnllGvvlalvltaail 67 
                 ++ +++ +l+ +fs l +a+  + +v   +++ l+ v+ ++vl+ a++
  CDO69633.1 164 VMFMFVdMLGGVFSDLSLAFKTQFDVIaAITYSLVVVMDGVVLICAMI 211
                 333332245556677666665554443467777777777766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2114.68
//
Query:       CDO69634.1  [L=934]
Description: hypothetical protein BN946_scf184851.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-26   92.3   0.9    4.7e-26   91.4   0.9    1.5  1  Clr2_transil  Transcription-silencing protein, cryptic loci r
    4.4e-08   34.0   0.0    2.8e-05   24.9   0.0    3.5  3  Clr2          Transcription-silencing protein Clr2


Domain annotation for each model (and alignments):
>> Clr2_transil  Transcription-silencing protein, cryptic loci regulator Clr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.9   5.2e-30   4.7e-26       1      68 []      80     146 ..      80     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 5.2e-30
                   -EESS--TT-EEEEE-----------EEEEE--TTS--B-SHHHHHHHHHHHHH-TT--GGG--SHHH CS
  Clr2_transil   1 yvLkelPagYalyehqkgkeeknerkdtyLyGhpsgkrfrSpaeflpHllwLltdkekdvknCsCklC 68 
                   yvLk++P+gY+ly+h+kg  +  +r+d yL+G+ +++rfrS++ef+pH+lwL++d++ d++nCsCk+C
    CDO69634.1  80 YVLKSFPEGYQLYDHNKGPVK-APRHDPYLCGSVNVNRFRSTNEFIPHALWLMQDPTLDRANCSCKYC 146
                   9*****************998.67******************************************** PP

>> Clr2  Transcription-silencing protein Clr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.2   1.8e+03      70     128 ..     158     215 ..     136     235 .. 0.62
   2 !   24.9   0.0   3.1e-09   2.8e-05       2      84 ..     554     658 ..     554     697 .. 0.81
   3 !    4.3   0.0    0.0072        64     119     146 .]     792     820 ..     702     820 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.2
        Clr2  70 irlaGkvytlvrkraykppssnaappakpkpleavvieelpkgfkavelrkygewyrvh 128
                 + l+G + + ++++ +  p+s +ap    +p e++++ ++pk f av  ++  +   v 
  CDO69634.1 158 LGLSGLARRSASASGAL-PPSLKAPRPRREPRESRQARAPPKPFAAVRRAPKPPKTLVG 215
                 55555555555555444.77777777788888888999999999999995554444443 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 3.1e-09
        Clr2   2 yqGvylGaEriwvgDtVRlkpsesd.........................nnlasklelssdasndkadvlvideIqvllktadeedleeketirlaGk 75 
                 +qG+++G+Eriw  + VRlk  + +                         n +a +++++   s +k ++++id+   l+ t  ++        r +G 
  CDO69634.1 554 FQGLWWGTERIWTDELVRLKIARCQfapkgtdviyppagpsastlehvkgNPEAAQADPQRLGSSEKGLFMRIDGLF-LVDTHGPD--GPVRECRASGM 649
                 8*********************9999999999999999999999999998888999999999999999999999986.33333333..34455677777 PP

        Clr2  76 vytlvrkra 84 
                 vy+lv  + 
  CDO69634.1 650 VYELVDDDW 658
                 777776655 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0072
        Clr2 119 rkygewyrvh.sgkevelsendvaGRfYe 146
                 +k  + + ++ +++e ++s++ + GR+Y+
  CDO69634.1 792 TKGFRFRAILpPEHEAVVSLSLISGRYYP 820
                 222233333469999*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6642.70
//
Query:       CDO69635.1  [L=817]
Description: hypothetical protein BN946_scf184851.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-18   67.3  46.2      1e-18   67.3  46.2    4.5  4  KAR9            Yeast cortical protein KAR9
  ------ inclusion threshold ------
       0.17   12.0   0.4       0.51   10.4   0.4    1.8  1  COG2            COG (conserved oligomeric Golgi) complex comp
       0.31   10.5   1.3       0.96    8.9   1.3    1.9  1  Allexi_40kDa    Allexivirus 40kDa protein
       0.35   10.5   3.4        1.3    8.7   3.5    1.9  1  GARP            Glutamic acid/alanine-rich protein of Trypano
       0.39    9.2   2.0       0.59    8.6   2.0    1.2  1  FUSC            Fusaric acid resistance protein family
       0.52   10.6   3.2        2.5    8.4   0.3    2.7  2  Myb_DNA-bind_6  Myb-like DNA-binding domain
       0.53   10.6   1.9        1.3    9.4   0.4    2.3  3  Muted           Organelle biogenesis, Muted-like protein


Domain annotation for each model (and alignments):
>> KAR9  Yeast cortical protein KAR9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.5   4.6         7   1.8e+04     570     600 ..      12      41 ..       6      51 .. 0.41
   2 !    3.7   0.0    0.0071        18     128     159 ..      80     111 ..      78     131 .. 0.84
   3 !   67.3  46.2   3.9e-22     1e-18     240     613 ..     169     567 ..     161     583 .. 0.72
   4 ?   -7.5  22.3         7   1.8e+04     461     599 ..     575     719 ..     566     743 .. 0.69

  Alignments for each domain:
  == domain 1  score: -8.5 bits;  conditional E-value: 7
        KAR9 570 tlppvsPlerkkskspsPtaRsvsrvsarra 600
                 ++   s+++  ++  psP a svs  s++  
  CDO69635.1  12 SIHSSSSKNSFSNVPPSP-AHSVSAGSSSSS 41 
                 333333333333344444.333333333322 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0071
        KAR9 128 nsvlgdlgeEiedliklileleekrlsspkkg 159
                  +++ +l+  i d    i+e++e r++s+++g
  CDO69635.1  80 STHMTELSYAISDIQTRIFEIQELRHKSQASG 111
                 68999***********************7766 PP

  == domain 3  score: 67.3 bits;  conditional E-value: 3.9e-22
        KAR9 240 ledrrerLvkkykkLekdaealkkeliedrWnlvFrnlikeiqkmcdsversleklqeale.......................qlnnptalakriesd 315
                 l  +++ Lv++++   kd ++l+ el ed+W  vFr   +++  m+ s+e+ +++ q+ l                        +     + +  ++s+
  CDO69635.1 169 LIRKHAALVADWDSVRKDIQVLREELKEDKWLTVFRTVTEQADGMMSSLEKAVNRCQDFLWqvqkrgldesltassvsssgrsdKPLTFETFTAIVDSY 267
                 66799****************************************************976677799999999999988887544333445678889*** PP

        KAR9 316 eakkkykvcaIervlsiIqKavkdrlivngeiarllndLaskwdalkesiDlnldvesssvplsvekk.rvkdvlleelskskgrqlrdSvssilteDs 413
                 eakkk++++a  +vlsiI K+v+dr++ nge +r +++  ++w +lke i       + ++  ++++     d+ l+e   s++ q   S    l +  
  CDO69635.1 268 EAKKKHYMPATTKVLSIIDKGVQDRVTKNGECLRRHAECSQRWRNLKERI-----SRTDTDMENLRRLfLQGDSALSEGGSSQSGQTTMSKNGYLATPP 361
                 **************************************************.....66666666667777788******999999999999888888888 PP

        KAR9 414 patlsaiktPgsspassvimepan.knsstklelssrrkssvdlgslaerviasklkreSklPqiastleqtkrkskipkasskksllls..tpsktat 509
                 +  +s++ +P+s+   s + +p +  + + k+ +ss++++s + +  +++   +  ++ S  P  +  l  ++r+s     +  ++ + +  +++++++
  CDO69635.1 362 SGGKSKARSPSSN-TISRSISPFRkFARKLKAASSSNKSPSSGKATPIPSKSPAPTRQPSSEPPRT--L--RHRSSMFNFFKDGQPPTPTtpERPSHKY 455
                 899999*****99.5555555555244444444445554444344444444333444444333333..3..3344444444444444444345666667 PP

        KAR9 510 sesptpasrkesrispppk..nrPrwnastntsDlevGhnfkpltlttpsapapsrssrssstlppvsPlerkkskspsP.taRs....vsrvsarras 601
                 s+s tp s++ s+  ++++  +rP wn+st+   +e G ++k +++++ps +   r+s  ++++ppv P  +++ ++ s  + R+    +s+vs  + s
  CDO69635.1 456 SHSLTPDSSPASKKIEAASssKRPPWNSSTK---VESGGTIK-KSPLRPSISGLPRTS--ADDIPPVPPMYKRSLSRSSMaSSRPwspvTSSVSTAQSS 548
                 7777888887776655555579*******98...67888888.788899965555555..569998888776666665444556555556677777777 PP

        KAR9 602 skptviaspns.......r 613
                  +p  + +p s        
  CDO69635.1 549 TTPFSLYRPPSrshtpgpA 567
                 7777777776633333333 PP

  == domain 4  score: -7.5 bits;  conditional E-value: 7
        KAR9 461 erviasklkreSklPqiastl.eq.....tkrkskipkasskksllls.tpsktatsesptpasrkesrispppk...nrPrwnastntsDlevGhnfk 549
                 + ++ s  k+ S +P++++             +++ ++     s +   +p +++t  + +p sr   +i++      +rP    s ++ D  + ++++
  CDO69635.1 575 SVSPRSRPKTPSHIPAPSKSHfRSmsaagDVSPTSFAQRAM--SPSRAlSPTQSVTGIPVRPPSRSMIPIPSVHVssaSRPGSAMSYRP-DSAMSFHVS 670
                 44578889999*****9998844444322222344443333..33333568999999999999999888877665778*********99.556677788 PP

        KAR9 550 pltlttpsapapsrssrssstlppvsPlerkksksp.sPtaRsvsrvsarr 599
                  +  +tp +p   + + s   l  + P + k+ +sp +P +R++sr++a +
  CDO69635.1 671 AQRVQTPENPLRATPRPS--VLTRMPPSSFKDGNSPrTPGTRPASRAGAAT 719
                 899999999888888877..4444445555555555459******998765 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4    0.0002      0.51      62     113 ..     122     173 ..     119     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
        COG2  62 ghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekr 113
                 ++L +l+e+l+ v++ ++aa++ ve + +  +++ ++v+s+ ee ++l +k 
  CDO69635.1 122 QSLSSLDERLDAVSKGVKAATESVEPILSRSEKTPTAVTSRSEEEAALIRKH 173
                 6899************************************999877665444 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3   0.00037      0.96      73     158 ..      76     162 ..      49     176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00037
  Allexi_40kDa  73 llsqttlLselrdalrtltklldklksvekklelsaetasds.kllkklesietsleelhakldelsssetsesegPsssptkassa 158
                   ll+ +t+++el  a+  +++ + +++++ +k+++s ++ + s  + ++l+s++++l+++ + ++  ++s++   ++ +++pt  +s+
    CDO69635.1  76 LLAISTHMTELSYAISDIQTRIFEIQELRHKSQASGDSRNASsVIDQSLSSLDERLDAVSKGVKAATESVEPILSRSEKTPTAVTSR 162
                   455667777777777777777777777776666665554443034456677777777776666666666666555555555554444 PP

>> GARP  Glutamic acid/alanine-rich protein of Trypanosoma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.5   0.00051       1.3      84     173 ..     106     196 ..     103     226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00051
        GARP  84 asevegeaanlkavaeeylesldksLkslaes.ansdedvreaAkkCtetaenVTseSLeealealakltdednaeelreeaneaaeeLee 173
                  s+++g+++n+ +v ++ l+sld+ L+ +++  +++ e+v  + ++ ++t + VTs+S eea+   ++ + + + +++r++ + + eeL+e
  CDO69635.1 106 KSQASGDSRNASSVIDQSLSSLDERLDAVSKGvKAATESVEPILSRSEKTPTAVTSRSEEEAALIRKHAALVADWDSVRKDIQVLREELKE 196
                 6899***********************9987559999*********************9999988888899*****************986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.0   0.00023      0.59     207     344 ..      69     210 ..      35     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00023
        FUSC 207 aayesprirararalrrllsrmlallallsslarllarlraeeaaavpe..laallaelaaleaaaaaealeaalaalrarlralrrale...adadta 300
                  + e+ r+ a + ++ +l+ ++ ++ +++ ++++l +  +a+++ + ++  +++ l  l++    a +++ +aa ++++  l + ++ +     +++ +
  CDO69635.1  69 GSHEDLRLLAISTHMTELSYAISDIQTRIFEIQELRHKSQASGDSRNASsvIDQSLSSLDER-LDAVSKGVKAATESVEPILSRSEKTPTavtSRSEEE 166
                 5788999999999*****************************99999889999999999995.33344444444444444444444444455599999* PP

        FUSC 301 alllarlaellaelaqllaslraleaaiaaarraerlarhrdhl 344
                 a+l++  a l+a++  ++++++ l+++ +++++ + +++ ++ +
  CDO69635.1 167 AALIRKHAALVADWDSVRKDIQVLREELKEDKWLTVFRTVTEQA 210
                 **************************999976666655555554 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.11   2.8e+02       3      41 ..     163     201 ..     162     211 .. 0.74
   2 ?    8.4   0.3   0.00098       2.5      30      51 ..     301     321 ..     291     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
  Myb_DNA-bind_6   3 eeEdeiLlklvekygndWknIaealnrRtpkqc.fdrwkn 41 
                      eE+ +L++ + +   dW ++ + +     +++  d+w++
      CDO69635.1 163 SEEEAALIRKHAALVADWDSVRKDIQ-VLREELkEDKWLT 201
                     599999*99999999******99998.3444441467766 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00098
  Myb_DNA-bind_6  30 RtpkqcfdrwknkLrpkisrkk 51 
                     R++ +c +rw+n L+ +isr+ 
      CDO69635.1 301 RRHAECSQRWRN-LKERISRTD 321
                     7899********.*****9985 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.4    0.0005       1.3      54     125 ..     118     195 ..      84     198 .. 0.73
   2 ?   -1.2   0.1      0.88   2.3e+03      57      92 ..     204     239 ..     185     270 .. 0.63
   3 ?   -2.2   0.0       1.9   4.7e+03      73     120 ..     288     320 ..     249     329 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0005
       Muted  54 qllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqeke......eerkaeweeflkelqekkeevD 125
                 +++++ l s++e+L  ++k ++aa+e+ve +l++++++    +++ +e+        ++ a w+++ k++q  +ee+ 
  CDO69635.1 118 SVIDQSLSSLDERLDAVSKGVKAATESVEPILSRSEKTPTAVTSRSEEEAalirkhAALVADWDSVRKDIQVLREELK 195
                 4567778889999*********************76665544444444335554446677788888888888887765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.88
       Muted  57 pkclesmkenLselnkkleaalekverllqkeleee 92 
                 ++++e+ +  +s+l+k+++  ++   +++++ l+e 
  CDO69635.1 204 RTVTEQADGMMSSLEKAVNRCQDFLWQVQKRGLDES 239
                 344445555566666666666666666666655554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
       Muted  73 kleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqek 120
                  +++   k  + l++               + e  ++w ++++ +++ 
  CDO69635.1 288 GVQDRVTKNGECLRR---------------HAECSQRWRNLKERISRT 320
                 333333333333333...............333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.94u 0.41s 00:00:01.35 Elapsed: 00:00:00.57
# Mc/sec: 4330.18
//
Query:       CDO69636.1  [L=838]
Description: hypothetical protein BN946_scf184851.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-08   33.2   0.5    5.6e-08   33.2   0.5    2.9  3  TPR_19      Tetratricopeptide repeat
    5.2e-07   30.2   1.5    5.2e-07   30.2   1.5    2.7  2  TPR_16      Tetratricopeptide repeat
    3.3e-06   26.8   1.6     0.0027   17.7   0.0    3.6  3  TPR_2       Tetratricopeptide repeat
    3.6e-06   27.0   0.9    1.2e-05   25.4   0.1    2.3  2  TPR_17      Tetratricopeptide repeat
     0.0002   21.9  19.1     0.0096   16.7   0.0    5.1  4  TPR_14      Tetratricopeptide repeat
    0.00024   20.9   0.3    0.00024   20.9   0.3    2.5  2  TPR_10      Tetratricopeptide repeat
      0.001   19.1   0.4      0.001   19.1   0.4    3.8  4  TPR_9       Tetratricopeptide repeat
     0.0012   18.6   0.0     0.0026   17.5   0.0    1.5  1  TPR_1       Tetratricopeptide repeat
     0.0035   17.3   1.4      0.033   14.2   0.0    3.1  3  TPR_7       Tetratricopeptide repeat
     0.0048   17.0   0.1      0.031   14.5   0.0    2.3  2  TPR_8       Tetratricopeptide repeat
     0.0072   16.0   0.2       0.64    9.7   0.1    2.4  2  TPR_11      TPR repeat
  ------ inclusion threshold ------
      0.017   15.5   1.1      0.017   15.5   1.1    2.7  2  TPR_20      Tetratricopeptide repeat
      0.018   15.3   0.9      0.069   13.4   0.2    2.0  1  TPR_12      Tetratricopeptide repeat
      0.018   15.5   2.6      0.023   15.1   0.2    2.2  2  BTAD        Bacterial transcriptional activator domain
      0.043   14.0   1.4       0.11   12.7   0.6    2.0  1  HemY_N      HemY protein N-terminus
       0.05   13.2   0.8        3.7    7.2   0.2    2.6  2  HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
       0.12   12.6   0.0       0.26   11.5   0.0    1.5  1  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
        0.3   11.8   0.1        0.3   11.8   0.1    4.1  4  TPR_4       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.1   4.1e+03      44      64 ..     510     531 ..     510     532 .. 0.85
   2 ?   -0.3   0.2       1.6   1.6e+03      25      61 ..     684     720 ..     682     727 .. 0.77
   3 !   33.2   0.5   5.6e-11   5.6e-08       3      56 ..     731     784 ..     729     788 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.1
      TPR_19  44 AealLdalpeedpdd.aryasL 64 
                 A+++ d++ e+dp d +++ sL
  CDO69636.1 510 ARQARDRIVEADPEDvPYILSL 531
                 7788899*******99998877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpddary 61 
                 +++r + A+++l+ g ++ A +  +a+ e+   d+  
  CDO69636.1 684 PALRSAVARIYLQGGYIAMAAKHFAAVAEDPTADPVQ 720
                 6778888999999999999999888888877666655 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 5.6e-11
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 aegd  +A a l+++l++dp+n  a  +LA all++g+l+eA+++L+ +++  p
  CDO69636.1 731 AEGDWGRATAELQRILAADPENFVAVNNLAVALLNQGRLQEAIQVLESALQTSP 784
                 79*********************************************9998766 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.9      0.61   6.1e+02       3      52 ..     690     737 ..     688     738 .. 0.75
   2 !   30.2   1.5   5.3e-10   5.2e-07       9      65 ..     731     784 ..     723     786 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.61
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                  ar++l+ g  + Aa+ + a+ ++   +P  ++ +++ ++ a + g++ +
  CDO69636.1 690 VARIYLQGGYIAMAAKHFAAVAEDPTADP--VQKAMNAALFASAEGDWGR 737
                 6899999999999*****88888886555..5777777777777777665 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 5.3e-10
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 + gd+ +A a l++ l++d   P++  A ++l++a+l qgrl+eA++++++al+ +p
  CDO69636.1 731 AEGDWGRATAELQRILAAD---PENFVAVNNLAVALLNQGRLQEAIQVLESALQTSP 784
                 5699***************...*******************************9998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.38   3.8e+02       7      27 ..     690     710 ..     684     712 .. 0.85
   2 ?    4.2   0.1     0.057        57       8      34 .]     726     752 ..     722     752 .. 0.86
   3 !   17.7   0.0   2.7e-06    0.0027       5      32 ..     757     784 ..     754     786 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.38
       TPR_2   7 lGlayyklgdyeeAleafekA 27 
                  +++y++ g  + A+++f ++
  CDO69636.1 690 VARIYLQGGYIAMAAKHFAAV 710
                 699***************875 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.057
       TPR_2   8 GlayyklgdyeeAleafekAleldPnn 34 
                 +l + + gd+ +A + +++ l+ dP+n
  CDO69636.1 726 ALFASAEGDWGRATAELQRILAADPEN 752
                 5556689******************97 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 2.7e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                 +nl+ a++++g+++eA++ +e Al+  P
  CDO69636.1 757 NNLAVALLNQGRLQEAIQVLESALQTSP 784
                 79**********************9887 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.2e-08   1.2e-05       2      34 .]     742     774 ..     741     774 .. 0.95
   2 ?   -2.0   0.1       6.4   6.4e+03      16      24 ..     795     803 ..     793     814 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.2e-08
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +++ l+ dP n++a nnLA++ll++G+l++A+q
  CDO69636.1 742 LQRILAADPENFVAVNNLAVALLNQGRLQEAIQ 774
                 5899***************************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.4
      TPR_17  16 ynnLAelll 24 
                 +n+LA+l++
  CDO69636.1 795 FNLLATLYE 803
                 699****97 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.3       1.5   1.5e+03       7      36 ..     584     613 ..     578     626 .. 0.68
   2 ?    4.8   0.5     0.063        63       1      39 [.     684     721 ..     684     727 .. 0.84
   3 !   11.5   0.5   0.00044      0.44       8      42 ..     726     760 ..     724     762 .. 0.88
   4 !   16.7   0.0   9.6e-06    0.0096       7      34 ..     759     786 ..     757     795 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.5
      TPR_14   7 laeallalGdpdeAiallrralalaPddae 36 
                 +a++ + +Gd+ + +++l ++l+++ + a+
  CDO69636.1 584 YARLKYWAGDHVGYLDALAALLRRCKAKAR 613
                 777777788877777777777776654333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.063
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawl 39 
                 p+++ a a+++l+ G  + A++++ ++ a +P+ + ++ 
  CDO69636.1 684 PALRSAVARIYLQGGYIAMAAKHFAAV-AEDPTADPVQK 721
                 5788899********************.55888776665 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00044
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 a +  a Gd+ +A a l+r+la++P++ +a   la
  CDO69636.1 726 ALFASAEGDWGRATAELQRILAADPENFVAVNNLA 760
                 5677899********************99988887 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 9.6e-06
      TPR_14   7 laeallalGdpdeAiallrralalaPdd 34 
                 la all++G+++eAi++l+ al++ P+ 
  CDO69636.1 759 LAVALLNQGRLQEAIQVLESALQTSPAT 786
                 7899*********************975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.9       2.6   2.6e+03       5      32 ..     598     625 ..     596     628 .. 0.83
   2 !   20.9   0.3   2.4e-07   0.00024       6      31 ..     757     782 ..     754     783 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.6
      TPR_10   5 lnNLanalrqrgrydeAealleealair 32 
                 l  La++lr+ +  ++A +  + a  ++
  CDO69636.1 598 LDALAALLRRCKAKARAARADQTAAGMW 625
                 6789*****9999999999988887766 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 2.4e-07
      TPR_10   6 nNLanalrqrgrydeAealleealai 31 
                 nNLa+al ++gr++eA + le al++
  CDO69636.1 757 NNLAVALLNQGRLQEAIQVLESALQT 782
                 9***********************97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.58   5.8e+02      43      71 ..     488     516 ..     486     518 .. 0.85
   2 ?   -2.2   0.4       4.8   4.8e+03       1      16 [.     610     625 ..     599     626 .. 0.85
   3 ?    0.9   0.2      0.52   5.2e+02      28      59 ..     683     713 ..     681     727 .. 0.74
   4 !   19.1   0.4     1e-06     0.001       5      61 ..     729     785 ..     725     791 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.58
       TPR_9  43 GclsaAladLeaylalapdapdaeairaq 71 
                 G++s A  dL +++  +  ++ a+++r +
  CDO69636.1 488 GDYSRAGGDLHTMIMTNSWRAIARQARDR 516
                 99************888888888888876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.8
       TPR_9   1 lkaiaireedwerala 16 
                 +ka+a+r+++ ++ ++
  CDO69636.1 610 AKARAARADQTAAGMW 625
                 5889999999988887 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.52
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylala 59 
                 +p +r   ++++ q G ++ A++ + a ++ +
  CDO69636.1 683 SPALRSAVARIYLQGGYIAMAAKHFAAVAE-D 713
                 68899999**************99876554.3 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 1e-06
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 a  e dw ra a ++r+l+ +P+    +   +++l  +G+l++A++ Le +l+ +p+
  CDO69636.1 729 ASAEGDWGRATAELQRILAADPENFVAVNNLAVALLNQGRLQEAIQVLESALQTSPA 785
                 56799************************************************9996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.6e-06    0.0026       5      32 ..     757     784 ..     754     785 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnP 32 
                 +nl++a++++g+++eA++  e AL+  P
  CDO69636.1 757 NNLAVALLNQGRLQEAIQVLESALQTSP 784
                 8***********************9766 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3   1.3e+03       4      24 ..     689     709 ..     685     717 .. 0.84
   2 ?   -2.9   0.0       9.4   9.3e+03       9      27 ..     729     747 ..     724     752 .. 0.67
   3 !   14.2   0.0   3.3e-05     0.033       3      27 ..     757     781 ..     755     786 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                 + ar+y + G+ + A++++ +
  CDO69636.1 689 AVARIYLQGGYIAMAAKHFAA 709
                 679************999976 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.4
       TPR_7   9 ysrlGdyeeAielyeqsLa 27 
                  s++Gd+ +A   +++ La
  CDO69636.1 729 ASAEGDWGRATAELQRILA 747
                 5679999999877777444 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 3.3e-05
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLa 27 
                 +nLa++  ++G+ +eAi+++e +L+
  CDO69636.1 757 NNLAVALLNQGRLQEAIQVLESALQ 781
                 8********************9664 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       3.2   3.2e+03       8      24 ..     691     707 ..     689     712 .. 0.82
   2 !   14.5   0.0   3.1e-05     0.031       5      33 ..     757     785 ..     755     786 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.2
                 HHHHHHTT-HHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyy 24 
                 ++iyl+ g + +A + +
  CDO69636.1 691 ARIYLQGGYIAMAAKHF 707
                 79999999999998877 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +nl+ ++l++g+++eA++++e al+ +p+
  CDO69636.1 757 NNLAVALLNQGRLQEAIQVLESALQTSPA 785
                 79**********************99986 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0016       1.6       7      42 .]     732     767 ..     731     767 .. 0.95
   2 !    9.7   0.1   0.00065      0.64       4      26 ..     763     785 ..     762     787 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0016
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                  G++  A +++++ l+ dP+n  a +nL++a+++qG
  CDO69636.1 732 EGDWGRATAELQRILAADPENFVAVNNLAVALLNQG 767
                 699999****************************99 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00065
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPd 26 
                 +  qG++ eAi++++ Al+ +P 
  CDO69636.1 763 LLNQGRLQEAIQVLESALQTSPA 785
                 5679***************9885 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.5   2.5e+03      24      48 ..     686     710 ..     683     728 .. 0.69
   2 ?   15.5   1.1   1.7e-05     0.017       8      52 ..     739     783 ..     735     827 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.5
      TPR_20  24 arldlAlallaagryeeAleqLlei 48 
                 +r ++A+ +l++g  + A++++ ++
  CDO69636.1 686 LRSAVARIYLQGGYIAMAAKHFAAV 710
                 5677888888888888888776554 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.7e-05
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrd 52 
                 +ael++ laa+p++  a  +lA all +gr +eA++ L + l++ 
  CDO69636.1 739 TAELQRILAADPENFVAVNNLAVALLNQGRLQEAIQVLESALQTS 783
                 789*********************************998888765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2     7e-05     0.069       7      31 ..     757     781 ..     752     785 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7e-05
      TPR_12   7 nnlaavlrrlgrydeAlellekale 31 
                 nnla++l+ +gr++eA++ le al+
  CDO69636.1 757 NNLAVALLNQGRLQEAIQVLESALQ 781
                 4788888888888888888888876 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2         2     2e+03      61      84 ..     600     623 ..     587     647 .. 0.75
   2 ?   15.1   0.2   2.3e-05     0.023      72     123 ..     729     780 ..     697     787 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHTT-HHHHHHH CS
        BTAD  61 rlealealaeaelrlGraeealae 84 
                 +l+al ++++a++r +ra++ +a 
  CDO69636.1 600 ALAALLRRCKAKARAARADQTAAG 623
                 456666666666666666666554 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.3e-05
                 HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  72 elrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlr 123
                  ++ G++ +a ael++++a++P +  ++  l  Al  +Gr +eA++v e++ 
  CDO69636.1 729 ASAEGDWGRATAELQRILAADPENFVAVNNLAVALLNQGRLQEAIQVLESAL 780
                 46779*****************************************988775 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   0.00011      0.11      60     100 ..     720     762 ..     715     768 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      HemY_N  60 realseGlialaeGdfarAekaaakaaklsea..pllayllaA 100
                 ++a++ +l a aeGd+ rA  ++++ ++ +++   ++++l+ A
  CDO69636.1 720 QKAMNAALFASAEGDWGRATAELQRILAADPEnfVAVNNLAVA 762
                 899**********************999986658678888877 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0037       3.7      47     118 ..     686     757 ..     682     762 .. 0.78
   2 ?    4.1   0.0     0.034        34      53      80 ..     761     788 ..     752     799 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0037
  HrpB1_HrpK  47 ldllegvlliergrweeAlrlLreveaeasgtpyakaLlAlcLaalrDeeW.rayAeevlesdadpdalaLvk 118
                 l+   + ++++ g+++ A++ ++ v ++++  p+ ka+ A +L+a  + +W ra Ae  +   adp+  + v+
  CDO69636.1 686 LRSAVARIYLQGGYIAMAAKHFAAVAEDPTADPVQKAMNA-ALFASAEGDWgRATAELQRILAADPENFVAVN 757
                 55566889999***************************99.69999999994555655455556666665555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.034
  HrpB1_HrpK  53 vlliergrweeAlrlLreveaeasgtpy 80 
                 v l+++gr++eA+++L++  ++++ t +
  CDO69636.1 761 VALLNQGRLQEAIQVLESALQTSPATIV 788
                 456799************9988887655 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00026      0.26      35      81 ..     731     778 ..     700     791 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
                 HTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  35 lngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                   g++ rA   l++    ++++  +   +A +ll +++++eAi++Le+
  CDO69636.1 731 AEGDWGRATAELQRIlAADPENFVAVNNLAVALLNQGRLQEAIQVLES 778
                 556666666666666666666666666666666666666666666664 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       3.1   3.1e+03       6      20 ..     506     520 ..     505     521 .. 0.90
   2 ?   -1.6   0.1       6.7   6.7e+03       2      21 ..     685     704 ..     684     708 .. 0.80
   3 ?   -0.1   1.6       2.2   2.2e+03       6      26 .]     724     744 ..     722     744 .. 0.87
   4 ?   11.8   0.1   0.00031       0.3       6      25 ..     758     777 ..     754     778 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.1
       TPR_4   6 aLArallalGdldeA 20 
                 ++A a +a+ +  eA
  CDO69636.1 506 WRAIARQARDRIVEA 520
                 899********9998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.7
       TPR_4   2 rallaLArallalGdldeAr 21 
                 ++++a Ar +l+ G  + A+
  CDO69636.1 685 ALRSAVARIYLQGGYIAMAA 704
                 567777999***99999986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.2
       TPR_4   6 aLArallalGdldeAraller 26 
                 + A  + a Gd+ +A a l+r
  CDO69636.1 724 NAALFASAEGDWGRATAELQR 744
                 7789999********999986 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00031
       TPR_4   6 aLArallalGdldeAralle 25 
                 +LA all +G+l eA ++le
  CDO69636.1 758 NLAVALLNQGRLQEAIQVLE 777
                 8**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.58
# Mc/sec: 4373.63
//
Query:       CDO69637.1  [L=332]
Description: hypothetical protein BN946_scf184851.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-19   68.7   1.5    8.8e-19   67.8   0.9    1.7  2  Lactamase_B_2  Beta-lactamase superfamily domain
    1.9e-14   53.9   1.2    3.6e-14   53.0   1.2    1.5  1  Lactamase_B_3  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
       0.14   12.1   7.6      0.043   13.8   3.8    2.1  3  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11   6.3e+02     123     147 ..      63      86 ..      34      94 .. 0.68
   2 !   67.8   0.9   1.5e-22   8.8e-19       9     201 .]      87     293 ..      68     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
                    TTSEEEEEECTTEEEEEESS-S--- CS
  Lactamase_B_2 123 gdtlGlriegggkrvyyigDtgyip 147
                     ++ Glri  ++ +++++gD  ++ 
     CDO69637.1  63 LEWRGLRIM-TDPNFLHAGDHVHLG 86 
                    379999999.899999999988765 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 1.5e-22
                    TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC.C--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEE..... CS
  Lactamase_B_2   9 pdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlre.lrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfel..... 98 
                    p++ +q  r+ +P    delppi++Vll+h H DH+   + l e +  ++lp++ +++   +l++     a++e+ +v+v+ ld+++  ++     
     CDO69637.1  87 PGVTAQ--RLTNPSVSIDELPPIHLVLLSHYHEDHF---DKLVEdRLRRDLPIISTPHAKHHLAEA---QAKDEP-FVTVTALDTWQAADIhavga 173
                    445555..55567779********************...56666433345***************9...566666.*******************8 PP

                    .CSTTEEEEEEEE-EE--C.....TCCE-TT.......TSEEEEEE.....CTTEEEEEESS-S---..HHHHHHHCT-SEEEEE-S-SSTTHHHH CS
  Lactamase_B_2  99 .gdggleitatparhksgr.....rldrnag.......dtlGlrie.....gggkrvyyigDtgyip..eeigerlggadllllditayeddemir 174
                     gd++l++ a+p +h  +      +     +       +t G+++e     g++ r+y +gDt  ++  ++i e++  +dl+l+  + ++   +  
     CDO69637.1 174 aGDANLKVIAMPGKHLPPGildmvN-----SalgagipPTNGWMVEllgegGKTFRIYISGDTLMVDdlKSIPEKFPHVDLMLIHLGGTSIPGPNL 264
                    8777777777777777777665441.....34456677*********986666677***********8888**************99999876655 PP

                    ..HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 175 ..hmgHltpeeaveaaadlgakrlvliHi 201
                       m++++ ++ ++++  +++ ++++iH+
     CDO69637.1 265 plLMVTMDADQGIQLVHLINPDVTIPIHY 293
                    99**************************7 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   1.2     6e-18   3.6e-14       1     163 []      52     292 ..      52     292 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 6e-18
  Lactamase_B_3   1 eltwlghnsflletagarilvDPf..........kanlgyeppa.................eeaDlvlisqaledHahletlkql........... 58 
                    +lt++g ++ lle++g ri++DP                    +                 + + lvl+s+ +edH++     +l           
     CDO69637.1  52 TLTFVGTATTLLEWRGLRIMTDPNflhagdhvhlG--------PgvtaqrltnpsvsidelPPIHLVLLSHYHEDHFDKLVEDRLrrdlpiistph 139
                    59**********************76666555440........1444455666677888889******************9999955555555544 PP

  Lactamase_B_3  59 ..............aenvkvleeges......levg..gleiravatsh.........davggsergenngflleq.....dgltiyhlGhlahel 118
                                  +  v+ l+++++       ++g  +l++ a++++h         ++  g+   + ng+++e      +  +iy  G++    
     CDO69637.1 140 akhhlaeaqakdepFVTVTALDTWQAadihavGAAGdaNLKVIAMPGKHlppgildmvNSALGAGIPPTNGWMVELlgeggKTFRIYISGDTLMVD 235
                    444444444444443344444444443333321112124444444555588888777655566667889******9876544789*******9987 PP

  Lactamase_B_3 119 sseel.kelgrvDvvltPvgg...........pltlgqeealelakrLkpklvlPmh 163
                    + +++ +++ +vD++l+  gg            +t+++++ ++l+++++p++ +P+h
     CDO69637.1 236 DLKSIpEKFPHVDLMLIHLGGtsipgpnlpllMVTMDADQGIQLVHLINPDVTIPIH 292
                    7776669999********************9999**********************9 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.42   2.5e+03     111     111 ..      56      56 ..      14      93 .. 0.56
   2 ?   13.8   3.8   7.1e-06     0.043      41     139 ..     103     195 ..      85     199 .. 0.87
   3 ?   -2.7   0.0      0.86   5.1e+03     145     162 ..     225     242 ..     224     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.42
                  T CS
  Lactamase_B 111 e 111
                   
   CDO69637.1  56 V 56 
                  1 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.1e-06
                  GGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEE CS
  Lactamase_B  41 kpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkpdvdeeeldgnaggrralyvtggpghghghgvv 138
                  ++ +++ v+l+H+H DH+  l + + ++d p++  ++++++l +  a+d++         v+a +     ++++++a+g+  l+v+  pg +  +g++
   CDO69637.1 103 ELPPIHLVLLSHYHEDHFDKLVEDRLRRDLPIISTPHAKHHLAEAQAKDEPFVT------VTALDTWQAADIHAVGAAGDANLKVIAMPGKHLPPGIL 194
                  67899*****************************************99988874......89999999999999999999999999999988777766 PP

                  E CS
  Lactamase_B 139 e 139
                  +
   CDO69637.1 195 D 195
                  5 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.86
                  EEEECTTTSSHHCCCCCC CS
  Lactamase_B 145 vlftGDallagetgridl 162
                  + ++GD+l + +  +i++
   CDO69637.1 225 IYISGDTLMVDDLKSIPE 242
                  678899988887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2222.02
//
Query:       CDO69638.1  [L=593]
Description: hypothetical protein BN946_scf184851.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-55  188.6  19.3    1.8e-55  188.3  19.3    1.1  1  TPT             Triose-phosphate Transporter family
    5.6e-10   38.9  18.6    7.5e-10   38.5  18.6    1.1  1  UAA             UAA transporter family
    8.4e-09   35.7  32.0    8.9e-06   25.9  12.9    2.6  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
          1    9.0  12.3       0.14   11.8   2.9    2.4  2  DUF4126         Domain of unknown function (DUF4126)


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3  19.3   4.1e-59   1.8e-55       3     290 .]     105     409 ..     103     409 .. 0.89

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 4.1e-59
         TPT   3 lgllfllWYllnvvfnilnKkilnvfpyPltvsavqllvgsvlilvlwalglkkrpkisse...flkailplalvktlghvlavvslskvaVSfthtvK 98 
                   ll++lWY+++ +   ++K i+ +f yP+t++ vq+     ++l++ ++ l++  ++ ++    +++ +p++++++ gh+++ +++s+++VS  ht+K
  CDO69638.1 105 FILLCALWYMTSALSSNTGKSIMTLFRYPVTLTFVQFGFVAAYCLLF-MSPLVRFSRLRAPnkaIIQNTFPMGVFQVGGHIFSSMAISRIPVSTVHTIK 202
                 6799*********************************9999996654.455555555555444599********************************* PP

         TPT  99 asePiFtvilsrlllgeklsllvylsLlpivgGvalasvtEls.FnligfisAlisnltfslrnifsKkllkk...lkd...ldalnlfaiitilslll 190
                 a+ P+Ftv+  +ll+g ++s + y+sLlp+  Gv+la   ++s  n +g+++A  s ++f+++nif Kk++ +    ++   ld+lnl+++ + +++ll
  CDO69638.1 203 ALSPLFTVAAYALLFGVSYSPKTYISLLPLTFGVMLACSFDMSaSNAVGLLCAFGSAIVFVSQNIFFKKIVPSghgAQSshkLDKLNLLFYSSSMAFLL 301
                 ************************************97777762699************************98655333788***************** PP

         TPT 191 llPvallveg.....vlktpsllkst...kvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtav 281
                 ++P++++ +        + p+++++    +++ ++v+   +++g +++++n++a+ +L+ +spvt+s+a+ +Krv vI+++++ f +pv++++a G a+
  CDO69638.1 302 MIPIWIYYDLpallsSRTDPTHVAHPthgHATPHSVTYYFIANGTVHFAQNIIAFVILASTSPVTYSIASLIKRVAVICIAIVWFAQPVHPIQAAGIAL 400
                 *********98665434455555544543456999**************************************************************** PP

         TPT 282 aivGvflYs 290
                 + +G ++Y+
  CDO69638.1 401 TFFGLYMYN 409
                 ********8 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5  18.6   1.7e-13   7.5e-10       9     301 ..     104     411 ..      97     412 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.7e-13
         UAA   9 vfvgccsnvvllElivkeepkafg......nlltfvqflfvalegllesid...i...lkkrkiPlktYvilvalffitsvlnnealkydisvPvhiif 95 
                  f+ +c   ++   + ++++k+++       +ltfvqf fva+  ll       +   + ++k+ +++ + + ++ ++ ++ +  a++  i+v +   +
  CDO69638.1 104 RFILLCALWYMTSALSSNTGKSIMtlfrypVTLTFVQFGFVAAYCLLFMSPlvrFsrlRAPNKAIIQNTFPMGVFQVGGHIFSSMAISR-IPVSTVHTI 201
                 57778888888888888888888888888899*********999986444466515559999999999********************9.***998899 PP

         UAA  96 rssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshll 194
                 ++ + + +  + +l+ g +Ys   y+s+l lt Gv+++  ++++ +  +++  l  f   i+ ++ +++++ ++     +  + ++ ++ + lfys  +
  CDO69638.1 202 KALSPLFTVAAYALLFGVSYSPKTYISLLPLTFGVMLACSFDMSAS--NAVGLLCAFGSAIVFVSQNIFFKKIVPSGHGAQ-SSHKLDKLNLLFYSSSM 297
                 *************************************999888444..444555556666666667788888887665544.44788888********* PP

         UAA 195 slplfl..........llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefga.ltvtlvltlRKfvslllSillFknpltl 282
                 +++l++          ll+++  +      +++++   + p  ++y ++ + t ++ ++ +   i ++++  t ++   + ++  +++ i++F +p+  
  CDO69638.1 298 AFLLMIpiwiyydlpaLLSSRTDPT---HVAHPTHG-HATPHSVTYYFIANGTVHFAQNIIAFVILASTSpVTYSIASLIKRVAVICIAIVWFAQPVHP 392
                 *999998765544332222222222...22333333.678*********************88776666615667777777788899************ PP

         UAA 283 qhlvgtllVflglllysyv 301
                  +  g +l f+gl++y+++
  CDO69638.1 393 IQAAGIALTFFGLYMYNSA 411
                 ****************875 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9  12.9     2e-09   8.9e-06       4     134 ..     106     238 ..     103     241 .. 0.76
   2 !   15.1  11.1   4.4e-06      0.02       3     135 ..     251     408 ..     249     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2e-09
        EamA   4 illallaalfwaiyfvlskillrkv.spltltfvrfliagilllii.allkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslits 99 
                 ill+ l  +++a++  + k +++ +  p+tltfv+f + ++ +l++ ++l + ++ + +++  +   + +g++  v ++++  +a++++++s++  i +
  CDO69638.1 106 ILLCALWYMTSALSSNTGKSIMTLFrYPVTLTFVQFGFVAAYCLLFmSPLVRFSRlRAPNKAIIQNTFPMGVFQ-VGGHIFSSMAISRIPVSTVHTIKA 203
                 455555555666666666555444469**********6666665551555555554455555566668888766.67889******************* PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvll 134
                 l+P+ft+   +ll+g + + k++++++   +Gv+l
  CDO69638.1 204 LSPLFTVAAYALLFGVSYSPKTYISLLPLTFGVML 238
                 *********************************98 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.4e-06
        EamA   3 gillallaalfwaiyfvlskillrkv.........spltltfvrfliagilllii..................allkegklaklslkdwllllllgllg 74 
                 g+l a+ +a+++ +  ++ k+++ +          + l l+f+++ +a++l+++i                   ++  +     ++ ++ ++++     
  CDO69638.1 251 GLLCAFGSAIVFVSQNIFFKKIVPSGhgaqsshklDKLNLLFYSSSMAFLLMIPIwiyydlpallssrtdpthVAHPTHG--HATPHSVTYYFIANGTV 347
                 66777777777777777777774444666666666999*****************9999999666555555432222222..23444455554443344 PP

        EamA  75 tvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  ++ +++ f  l +ts+ + s+++++  v +++++++++ +++  +q +gi+l ++G+++ 
  CDO69638.1 348 HFAQNIIAFVILASTSPVTYSIASLIKRVAVICIAIVWFAQPVHPIQAAGIALTFFGLYMY 408
                 4444578888899999999***************************************986 PP

>> DUF4126  Domain of unknown function (DUF4126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.0     0.033   1.5e+02      12     117 ..     142     245 ..     139     254 .. 0.70
   2 ?   11.8   2.9   3.1e-05      0.14     112     171 ..     345     407 ..     341     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.033
     DUF4126  12 GlrvylplLllglaarfgliplpeglewlgspvvlgalav..ltlvElvadkipvvdsvldtiqtfvrpvaGallaaaaagaveldpvlkavlavlaGg 108
                 G+ ++ +lL+++ + rf+ ++ p+  ++++++  +g++ v    +  ++ + ipv  s ++ti+  ++p++  +  a ++g +   ++   +l + +G+
  CDO69638.1 142 GFVAAYCLLFMSPLVRFSRLRAPN-KAIIQNTFPMGVFQVggHIFSSMAISRIPV--STVHTIKA-LSPLFTVAAYALLFGVSYSPKTYISLLPLTFGV 236
                 889999***********9777766.789999999999877224556777777777..44555553.344444444444444332245677889999999 PP

     DUF4126 109 llAlvvhlv 117
                 +lA ++ ++
  CDO69638.1 237 MLACSFDMS 245
                 999887665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.1e-05
     DUF4126 112 lvvhlvkaltRlasnastegfgnpvvstlEdvl..avvlvllai.llPvlalvllllllllal 171
                 ++vh+++ ++  ++ ast +++  ++s++  v+  ++++v++a   +P++a+ ++l ++ l +
  CDO69638.1 345 GTVHFAQNIIAFVILASTSPVTYSIASLIKRVAviCIAIVWFAQpVHPIQAAGIALTFFGLYM 407
                 799**************************9876115566666643678888888877766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3911.93
//
Query:       CDO69639.1  [L=524]
Description: Glycosyltransferase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-18   65.3   0.1    7.5e-18   64.6   0.1    1.2  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    0.00037   20.5   0.0     0.0007   19.6   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1   8.3e-22   7.5e-18     268     379 ..     305     425 ..     286     439 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 8.3e-22
       UDPGT 268 fvqssGehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWrfdg.......kkPstLaknt..llvkWlPqndlLgHPktkAFvtHaGangvyEai 357
                  +   Ge+ vv++S+Gsm  ++   k+ a  ++L +   +++            +  + L++     +  W+Pq ++L H  t+  +tH+G n+v+E i
  CDO69639.1 305 QLSERGERSVVYISFGSMFWPLNPAKLVAALESLMQQDIPFVMANPSpmakfpdESVKRLQEYQraFVATWMPQQAILAHQATGWCLTHGGHNSVLECI 403
                 55567*****************99988887788877666665433333332222555566543244999****************************** PP

       UDPGT 358 snGvPmvglPlFgdqrdNikrm 379
                   GvPm+  P+ +dq+ N+  +
  CDO69639.1 404 DAGVPMIFWPIAADQPTNALYL 425
                 ******************9766 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.8e-08    0.0007      71     117 ..     384     427 ..     354     443 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.8e-08
                      HHH-.EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHH CS
  Glyco_tran_28_C  71 kaad.LvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelek 117
                      ++a   +++++G+++++E+  +g+p+I+ p       +q  Na +l++
       CDO69639.1 384 HQATgWCLTHGGHNSVLECIDAGVPMIFWPIAA----DQPTNALYLSE 427
                      45555789*********************9999....******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3426.25
//
Query:       CDO69640.1  [L=199]
Description: hypothetical protein BN946_scf184851.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-12   47.1   2.0    2.2e-12   46.6   0.5    2.0  2  PQ-loop          PQ loop repeat
     0.0019   19.0   0.5     0.0049   17.7   0.2    1.7  2  ER_lumen_recept  ER lumen protein retaining receptor
  ------ inclusion threshold ------
      0.066   13.3   0.0       0.12   12.6   0.0    1.3  1  OSTbeta          Organic solute transporter subunit beta prot
       0.15   11.3   3.1       0.23   10.7   3.1    1.2  1  Peptidase_U4     Sporulation factor SpoIIGA
       0.51    9.5   3.9          8    5.6   0.2    2.1  2  CitMHS           Citrate transporter


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.45   1.6e+03      25      53 ..       6      34 ..       4      40 .. 0.66
   2 !   46.6   0.5     6e-16   2.2e-12       3      55 ..      50     102 ..      48     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.45
     PQ-loop 25 ykrkSteGlSilflllwllGdilsllyli 53
                y rk  + + i +++ +++ + ++ +++i
  CDO69640.1  6 YGRKRSKMIAIAMFVAAVVIFAAFEVGMI 34
                55777777788888877776666555555 PP

  == domain 2  score: 46.6 bits;  conditional E-value: 6e-16
     PQ-loop   3 eilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllyliln 55 
                 +++g++s++l   +++PQ++++yk k ++G+S+lf+  +l+G++++ l+l ++
  CDO69640.1  50 QFFGIFSTILIGGALLPQYYEIYKYKEVVGISLLFMSVDLMGGVFNDLSLAFK 102
                 79*******************************************98887776 PP

>> ER_lumen_recept  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   1.4e-06    0.0049      71     127 ..      21      82 ..       2      95 .. 0.75
   2 ?    1.3   0.0      0.16   5.6e+02      41      73 ..      77     122 ..      72     141 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
  ER_lumen_recept  71 lellivpslllallfhpg.....ssktllevlwtfsiiLesvAilPQlillqktgeveslts 127
                       +++i++++ ++++f         +   ++++ +fs iL + A+lPQ++ ++k +ev  +  
       CDO69640.1  21 AAVVIFAAFEVGMIFAIFpsyraGNTAPVQFFGIFSTILIGGALLPQYYEIYKYKEVVGISL 82 
                      3467777777775443223367888999**************************99987765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
  ER_lumen_recept  41 ialillsiyiiylilvkfketyekekDtfkle.............l 73 
                      ++ i+l ++ + l+  +f++   + kD+f +              +
       CDO69640.1  77 VVGISLLFMSVDLMGGVFNDLSLAFKDHFDVVagvtyslvvlldgI 122
                      6667777777777777888888888888888866555554433322 PP

>> OSTbeta  Organic solute transporter subunit beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.2e-05      0.12      36     115 ..     113     190 ..     109     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
     OSTbeta  36 ysiLvLsavvvvisvvLLarsiqanRnrKiqpqeketpealyleeakakennslnilretllsekpklaevevelkdrdv 115
                 ys++vL   +v++  ++L     a R rK  +  ++++ea     a+ + n+  ++l+e ++ ++++    ev +k+ +v
  CDO69640.1 113 YSLVVLLDGIVILCALILNP--IARRRRKRPAASESAAEANAAPSAEERANHTAHSLQERPVRNEDEQRSSEVGMKKPTV 190
                 78888777777776666644..35566666667888999999999999999999*******9999999999999998776 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.1   6.3e-05      0.23      56     120 ..      17     119 ..      10     147 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.3e-05
  Peptidase_U4  56 esillsillkilvsllmvliafgpkslkeflkalllfylvsfllgGilfalsylllkskn..................................... 115
                   +++++ +++ +++ + m+++ f   +  + + + ++ ++ ++l+gG+l+  +y ++k+k+                                     
    CDO69640.1  17 AMFVAAVVIFAAFEVGMIFAIFPSYRAGNTAPVQFFGIFSTILIGGALLPQYYEIYKYKEvvgisllfmsvdlmggvfndlslafkdhfdvvagvty 113
                   457888889999999***999****************************999999776666665555555555556666666666666666666654 PP

  Peptidase_U4 116 .llvll 120
                    l+vll
    CDO69640.1 114 sLVVLL 119
                   433333 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.6    0.0028       9.9      70     132 ..       8      66 ..       4      69 .. 0.72
   2 ?    5.6   0.2    0.0022         8      79     115 ..     107     143 ..      81     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0028
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  70 gkrdllvllvlltallsafvsndgvvlimipivlslakrlkklppllliplalaaniggaltp 132
                 +kr    ++++++++++a+v + +  + mi ++++ ++  +++ p+ +  +     iggal+p
  CDO69640.1   8 RKRS---KMIAIAMFVAAVVIFAAFEVGMIFAIFPSYRA-GNTAPVQFFGIFSTILIGGALLP 66 
                 5566...56666777777777777778899999999996.88888855667777777777766 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0022
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  79 vlltallsafvsndgvvlimipivlslakrlkklppl 115
                 v++ +  s +v +dg v++++ i+ ++a+r  k+p++
  CDO69640.1 107 VVAGVTYSLVVLLDGIVILCALILNPIARRRRKRPAA 143
                 4566667788989*****************7777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1212  (0.0676); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1442.51
//
Query:       CDO69641.1  [L=532]
Description: hypothetical protein BN946_scf184851.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   29.0   9.2    2.7e-06   27.7   9.2    1.7  1  DUF1771   Domain of unknown function (DUF1771)
     0.0022   17.7   0.4       0.14   11.9   0.0    3.3  4  CUE       CUE domain
  ------ inclusion threshold ------
      0.026   14.4   0.0       0.06   13.2   0.0    1.6  1  RLL       RNA transcription, translation and transport factor
      0.059   13.3   0.0       0.12   12.3   0.0    1.6  1  UBA       UBA/TS-N domain


Domain annotation for each model (and alignments):
>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   9.2     6e-10   2.7e-06       6      60 ..     469     528 ..     466     531 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6e-10
     DUF1771   6 aeAdeharkrnelfekAaeAyrrGd.....gaaAkelseqGkehgekmeeanreAaeaIf 60 
                 ++A e+ ++r+ ++++A++A+++G+     g+ A +++e+++e++e+ +++  eAa++++
  CDO69641.1 469 RRAWELSEQRRAALKEASKAWQKGNnrnhgGEVAFYFAERARELQEQQQKEQLEAAREMV 528
                 6788999*************************************************9986 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.48   2.1e+03       1      14 [.      39      52 ..      39      54 .. 0.81
   2 !   11.9   0.0     3e-05      0.14       2      30 ..     112     139 ..     111     142 .. 0.90
   3 ?   -2.6   0.1         1   4.7e+03      30      41 ..     145     156 ..     145     157 .. 0.87
   4 ?    1.6   0.0     0.052   2.3e+02      18      34 ..     319     335 ..     318     339 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.48
                CHHHHHHHHHHSTT CS
         CUE  1 reqmletLkemFPd 14
                ++++l +L+e+  +
  CDO69641.1 39 NDDELRQLREVLSN 52
                689999**998766 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHSTTS-HHHHHHHHHHCTTT CS
         CUE   2 eqmletLkemFPdldeevIravLrasngn 30 
                 +++l  Lk +FP+++++ +r +  as+g+
  CDO69641.1 112 SSALGFLKAVFPHIPSDKLRSAI-ASHGD 139
                 678888*****************.98887 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1
                 THHHHHHHHHHC CS
         CUE  30 nvEatinaLLeg 41 
                 ++Ea+++ +L g
  CDO69641.1 145 DMEAVVEEILTG 156
                 789****99987 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.052
                 HHHHHHHHHCTTTHHHH CS
         CUE  18 evIravLrasngnvEat 34 
                 e+  ++Lra++g+ +a+
  CDO69641.1 319 EDALYALRATKGDPNAA 335
                 66789********9987 PP

>> RLL  RNA transcription, translation and transport factor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05      0.06     110     219 ..     192     327 ..     169     329 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
         RLL 110 qksklekk.........kseqeeqkksaepldaldvtskelkealnklaklln..iplh..............pddlvlleaalklieeklseeaieka 183
                 +++k++kk         + +q++   ++  +++ + +s++ + +l+++a++l   ip+h              p+++  l+a+   i++ +s++  e  
  CDO69641.1 192 KQKKQNKKgttftlidiR-QQQH---ARPVASSSQAASPDPWTQLASVASHLStlIPTHppsffqsifhspqhPTPAHALRAVINQIAKSFSNSDDELT 286
                 333333333444443322.2222...2333333555789999999999999875577779999999999988889999999999999999995555444 PP

         RLL 184 kkekktkgeplk....lee.fplGfdlgdealneaakiLRl 219
                 ++e+    ++l+      + ++l+++  d+ l++a ++LR+
  CDO69641.1 287 AEETPALYNMLEiittWPKyAELNIEERDRLLEDALYALRA 327
                 444333334433445555669*******************6 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05      0.12      17      35 ..     319     337 ..     318     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHTTTSHHHHHH CS
         UBA  17 eevveALratgnNeErAve 35 
                 e+++ ALrat++++++A++
  CDO69641.1 319 EDALYALRATKGDPNAALD 337
                 67899************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 3295.65
//
Query:       CDO69642.1  [L=393]
Description: hypothetical protein BN946_scf184851.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-97  326.0   1.1    3.8e-97  325.7   1.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.11   11.6   0.2       0.21   10.7   0.2    1.5  1  PBP_like  PBP superfamily domain


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.7   1.1  4.2e-101   3.8e-97       1     373 [.      20     391 ..      20     391 .. 0.96

  Alignments for each domain:
  == domain 1  score: 325.7 bits;  conditional E-value: 4.2e-101
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w++s++  t++v nP++g+v+++++aa+aed+ aav+aA +afk+w++ p+++R++iL +a d +++++ee a++   et  +      + e  id +r
  CDO69642.1  20 WRPSSTgVTFDVRNPTSGKVVGTAAAASAEDCTAAVEAASRAFKTWENSPLSQRRDILIRASDNFAKKREEVAKVAREETAITEDWLPVNFEWPIDQMR 118
                 777777566************************************************************************9999999999999***** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                  +a++  +l+ge+  s  +g + +++++++Gvv  I+PWN P++l+++++a  +++GNtvvlK +e +p   ++++e++eeaglP+gvln++++s+++ 
  CDO69642.1 119 DIASATMRLKGETGLSiIPGGQVFTQKRAIGVV--IVPWNAPVILTLRAVAVPIVCGNTVVLKTSEYSPKLQAMIVEVLEEAGLPAGVLNCISTSKEDS 215
                 ***********88666479************97..99*******************************************************8887765 PP

                 ...HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 197 ...gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                       +++hp+v+k++ftGs  vgr ia++a+k lk+++lElGGk+p++vl+daD+ +a++ai  +a++++GQ+C++++r++vq++ + e+++ l+e 
  CDO69642.1 216 parTTDIIAHPKVRKINFTGSDVVGRIIAQEAGKYLKPCVLELGGKAPVVVLNDADIPRAARAITSSALLHSGQICMSTERVIVQKGAASELINTLTEL 314
                 22256799******************************************************************************************* PP

                 HHT--BS-T.TSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SS CS
      Aldedh 293 akklkvgdp.ldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGP 373
                 +k++k gdp ld++ ++G+l s+++  +  +++++a+++gak+l+G        ++g++++P ++ +v+p mr++  E+F+P
  CDO69642.1 315 FKRVKAGDPhLDRAAHIGALFSADSPGNAISMLKDAVDQGAKVLVGD-----LTKEGAIMQPHLVVDVKPGMRLWDRETFAP 391
                 ********99***********************************98.....579**************************9 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   2.3e-05      0.21     131     187 ..      35      90 ..      26      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.3e-05
                 SSHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEECTCCCSHHHHH CS
    PBP_like 131 rshlavaaaVaagradvgvgieavaeelkgldfvplaeerydlvvrkealddpevqa 187
                 +s + v +a aa   d+  ++ea+ +++k  +  pl++ r d+++r+++ + ++ ++
  CDO69642.1  35 TSGKVVGTAAAASAEDCTAAVEAASRAFKTWENSPLSQ-RRDILIRASDNFAKKREE 90 
                 6778899999***************************7.99******9998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2704.22
//
Query:       CDO69643.1  [L=396]
Description: hypothetical protein BN946_scf184851.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-92  309.8   5.4    1.8e-78  264.1   2.0    2.0  2  Aldedh         Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.022   13.8   0.0      0.033   13.2   0.0    1.3  1  LuxC           Acyl-CoA reductase (LuxC)
        1.2    9.7   5.7       0.35   11.4   0.4    2.5  3  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   2.0   3.1e-82   1.8e-78       1     286 [.      14     306 ..      14     309 .. 0.94
   2 !   47.4   0.1   1.6e-16   9.6e-13     374     448 ..     307     382 ..     306     391 .. 0.90

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 3.1e-82
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH..HTHHHHHHHHHHHH---HHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlle..erkeelaeletletGkplaearaeveeaidv 96 
                 w+++++  t+ev nP+tg+v++++++a+aed+ aa++aA+ af++w++ p++ R++iL kaad l+  e k +++++   et  +      +  + ++ 
  CDO69643.1  14 WRPASTgHTFEVRNPTTGKVVGTTASASAEDCAAAIEAAALAFQTWENSPLSLRRDILLKAADFLAseEYKAKIMKTVNEETSATADTVVFNHVNPVNE 112
                 777777577*******************************************************974477899****************9966678*** PP

                 HHHHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTC CS
      Aldedh  97 lryyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgs 194
                 lr +a++ ++l+ge++ s  +g + +v+r++lGvv+ I+PWN P+ l++++++  l++GNtvv+K++e +p + ++++e++e+aglPkgv+n+v  s +
  CDO69643.1 113 LRSFAGATTRLQGESFVSyVPGGQVFVQRKALGVVLGIAPWNSPIGLTLKSIVLPLVCGNTVVFKCSEISPRTQAIVVEVLEKAGLPKGVVNFVGASRE 211
                 *************9988867**************************************************************************66554 PP

                 CH...HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHH CS
      Aldedh 195 ev...gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefv 286
                 +     +++++hp v+k++ftGs ++g+ ia++aak lk++++ElGGk+p++vledaD+ +a++ai  +a++++GQ+C++++r+++q++ +d+++
  CDO69643.1 212 DSparVAQIIAHPAVRKINFTGSDTIGKLIAAEAAKYLKPCVFELGGKSPVVVLEDADIPRAARAITSSALLHSGQICMSTERVIIQKGAADALL 306
                 4312278899********************************************************************************99875 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 1.6e-16
                 EEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGG.EES-BS CS
      Aldedh 374 VlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqS.glGreg 448
                 V+++  ++++e+a+++aN+t y L ag++tkd+ +a+ va+r++aG  +iN +t + + +  +gG + S g+G+++
  CDO69643.1 307 VIALAIVDTIEDAVAAANATSYSLVAGLWTKDVHTAFDVASRIRAGCTNINGPTIHVEWMRSHGGLGGStGYGHFM 382
                 6788889**********************************************88888889*****9884577665 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.5e-06     0.033      12     247 ..      70     299 ..      63     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.5e-06
        LuxC  12 lleeaaklladdeyskraierlakitgyeealleilkalaallkreeLkkvleseL.gqpeiLdeflktkeksyekaqprglvlhvlsgNvp.llpvms 108
                 +l +aa+ la++ey+ ++++++++ t+   + + +     ++   +eL+ +       q e+  ++++  +  + ++ + g+vl + + N+p +l ++s
  CDO69643.1  70 ILLKAADFLASEEYKAKIMKTVNEETSATADTVVF----NHVNPVNELRSFAGATTrLQGESFVSYVPGGQ-VFVQRKALGVVLGIAPWNSPiGLTLKS 163
                 56666777777777777777776666666666643....44444455555555554445566667777777.899****************9569**** PP

        LuxC 109 ilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeivqnaDvvvawGgeeai.kaise.klkpgkqli.kfGakvS 204
                 i+  l+++n  ++k S  +p ++a ++  l +    + +++ + +   + +   +++ i + a   + + g+++i k+i++  +k+ k+++ + G k  
  CDO69643.1 164 IVLPLVCGNTVVFKCSEISPRTQAIVVEVLEKAGLPKGVVNFVGAS-REDSPARVAQIIAHPAVRKINFTGSDTIgKLIAAeAAKYLKPCVfELGGKSP 261
                 ***********************99999998888776666666665.2334456777776666666666666666345555566777776634677766 PP

        LuxC 205 favvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvek 247
                 + v++ ++     +  aa+++         q C+s   v ++k
  CDO69643.1 262 VVVLEDAD-----IPRAARAITSSALLHSGQICMSTERVIIQK 299
                 66665544.....777777777777777777777777776665 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2       0.2   1.2e+03      44      71 ..      34      61 ..      27      90 .. 0.68
   2 ?   -3.3   0.0       2.1   1.3e+04      29      52 ..     273     293 ..     268     302 .. 0.62
   3 ?   11.4   0.4   5.8e-05      0.35      21      66 ..     311     354 ..     308     356 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.2
  T7SS_ESX_EspC 44 hGpicaatndavaaaeaarraagealaa 71
                    G+  +a++ ++aaa +a + a + +  
     CDO69643.1 34 VGTTASASAEDCAAAIEAAALAFQTWEN 61
                   4666666677777777666666666655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
  T7SS_ESX_EspC  29 avaaaagasaavldshGpicaatn 52 
                    a++a    +++ l   G ic+ t 
     CDO69643.1 273 AARAI---TSSALLHSGQICMSTE 293
                    33333...4455555588888775 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 5.8e-05
  T7SS_ESX_EspC  21 evaaeiasavaaaagasaavldshGpicaatndavaaaeaarraag 66 
                    +++++i++avaaa  ++++ +   G ++ ++++a++ a + r+++ 
     CDO69643.1 311 AIVDTIEDAVAAA--NATSYSLVAGLWTKDVHTAFDVASRIRAGCT 354
                    5899*********..999999999******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2679.60
//
Query:       CDO69644.1  [L=314]
Description: hypothetical protein BN946_scf184851.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00012   22.3   0.0    0.00034   20.8   0.0    1.9  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00028   20.8   0.0    0.00053   19.9   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0011   19.3   0.0     0.0021   18.5   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.6e-08   0.00034      26     117 .]     203     283 ..     132     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.6e-08
                     HHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  26 esfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     ++    +e +++va +   ++G + l+  ++     +yi  laV+  + ++ +++ +l +l+    ++    i l+v+  n++a+ lY ++GF
      CDO69644.1 203 DY---SPEkCTVVAMYKRLVVGAAFLSSPQE-----TYITYLAVRAGWDNSQIATSMLYHLITLNPNK---DITLHVSI-NNPAMLLYNRFGF 283
                     34...45558888999988999997777777.....**************************944444...45897755.66******9***9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   8.9e-08   0.00053      29     109 ..     206     286 ..     190     291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 8.9e-08
  Acetyltransf_10  29 gealllvaeeggkivGviel..rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav 109
                      +e+ ++va  +  +vG++ l   ++ +i+ l+V+  +    i++++l ++++   +++i  +l+v  ++ a  +Y ++GFka 
       CDO69644.1 206 PEKCTVVAMYKRLVVGAAFLssPQETYITYLAVRAGWDNSQIATSMLYHLITLNPNKDI--TLHVSINNPAMLLYNRFGFKAE 286
                      566788899998999*9966325555***************************866654..69999999***********985 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.5e-07    0.0021       5      75 ..     210     284 ..     205     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.5e-07
                     EEEEEETTEEEEEEEEEEES.TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld.aeitrlaVdpeyrgkGiGraLleaae.....kgiile.qlelnaekaikfYeklGFe 75 
                     + Va  +  +vG + ls  + ++it+laV+  + +  i++ +l + +     k i  + ++  n+ +a  +Y ++GF+
      CDO69644.1 210 TVVAMYKRLVVGAAFLSSPQeTYITYLAVRAGWDNSQIATSMLYHLItlnpnKDI--TlHVSINN-PAMLLYNRFGFK 284
                     55666667778866666655999********************873234442333..44455565.8999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2107.50
//
Query:       CDO69645.1  [L=645]
Description: hypothetical protein BN946_scf184851.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-46  156.2   0.0    5.8e-45  153.4   0.0    2.3  1  SIR2          Sir2 family
    2.7e-07   30.5   0.1    3.8e-05   23.5   0.1    2.4  2  DUF592        Protein of unknown function (DUF592)
     0.0066   16.2   0.4          4    7.2   0.2    2.4  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.027   13.9   0.0    1.4  1  CutC          CutC family
        2.7    7.9   7.4        5.5    6.8   7.4    1.5  1  Sigma70_ner   Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.0   1.6e-48   5.8e-45       1     177 []     284     514 ..     284     514 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 1.6e-48
                 -GGGGGGGT---SSSTTSHHHHSCHHH...HSSHHHHHHHHHHHHH................HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEE CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakee...laspealfskkllvee................vfyniarellaeeaepnaaHkalkklekkgkllrliT 80 
                 GAGiS+++GipdfRs++Glya l++++   l++p+++f++++++e+                + +++a ++++ ++ p+++H+++k +e+kgkllr++T
  CDO69645.1 284 GAGISVSCGIPDFRSRNGLYASLQENGeydLDDPQQMFDIEYFRENpavpktnlgvdanahdICSSFASKIYPSNFIPSPCHRFIKLIEDKGKLLRNYT 382
                 9********************999875566*************998888888888887777778899999999************************** PP

                 S-SSSHHHHTT-SSEEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCC.....................................BEEEEE CS
        SIR2  81 QNiDgLekkaGskkvvelHGslakakcvkcekkldkeelqeeieaekvpecekcgk.....................................llkpdv 142
                 QNiD+Le  aG+k+vv++HGs+a+a+c++c++++ + e+ ++i++++vp c+ c+                                      ++k   
  CDO69645.1 383 QNIDTLETLAGVKRVVQCHGSFATASCINCRARVPGAEIADDIMNQRVPICKACNVapppavsakpgkkgkkrkegwdsdasdepeppsyppgIMKASG 481
                 ******************************************************99********************************99999888874 PP

                 --CTSB-SHHHHHHHH.HHHH-SEEEEES--STSTT CS
        SIR2 143 vfFGealpdklkklie.kveeadlllviGtSlkVap 177
                      +l+d++++ ++ + +++dll++iGtSlkV p
  CDO69645.1 482 ---CKKLDDAFERSLMeDRHQVDLLIIIGTSLKVSP 514
                 ...47899999987665*****************98 PP

>> DUF592  Protein of unknown function (DUF592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0087        31      21      52 ..     181     212 ..     172     219 .. 0.87
   2 !   23.5   0.1   1.1e-08   3.8e-05     106     153 .]     236     283 ..     232     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0087
      DUF592  21 kyvlpeitkedslnarlfLKkyglkkFldkYL 52 
                  + +++ tk+++ +  l LK+ g++ F+++Y+
  CDO69645.1 181 LWSMTAWTKQEVKEMMLTLKEKGTAAFMTEYV 212
                 5778999***********************97 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.1e-08
      DUF592 106 kkeivrlikdLqkainkvlstrlrlsnfstidhfvdklkkakkilVlt 153
                  k+   l+  L+ a+++ l  r+rls+++tid++v  ++ +++il+lt
  CDO69645.1 236 TKQPRTLMYLLRVALSRELESRERLSQYNTIDDVVRLIQASSRILILT 283
                 566677889999***********************************8 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0015       5.5       1      25 [.     266     290 ..     266     297 .. 0.89
   2 !    7.2   0.2    0.0011         4      76     137 .]     498     549 ..     485     549 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
                   HHHHHHHHHH-SSEEEEE-CHHCHT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars 25 
                   i++++ l++a++r++il G g++ s
    CDO69645.1 266 IDDVVRLIQASSRILILTGAGISVS 290
                   789******************9865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                   HH-SEEEEES-SSSTCCCTTTTTTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  76 eeaDlvlalGarfddirttgsepefapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   ++ Dl++++G+ ++     ++ +     ++i  i i+++ i + + +d+ ++gd++++++ L
    CDO69645.1 498 HQVDLLIIIGTSLKV----SPVS-----ETISKILINKTPIRHIN-PDVVLLGDADDIVKHL 549
                   689*******99966....2222.....26888899999998876.8999999999998876 PP

>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.6e-06     0.027     128     182 ..     237     290 ..     223     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.6e-06
        CutC 128 dpeealeqlielgvervLtsGqkssalegleklaeLveqaaerieimagaGvnae 182
                 ++ ++l  l+++ ++r L s ++ s+++ ++ +  L+ qa+ ri i++gaG++  
  CDO69645.1 237 KQPRTLMYLLRVALSRELESRERLSQYNTIDDVVRLI-QASSRILILTGAGISVS 290
                 5678999999**************************9.6899**********864 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.4    0.0015       5.5       6      74 ..      44     114 ..      41     140 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
  Sigma70_ner   6 aellelydrveageirLrdiidGf.lDeeeeeeeeeeeedeeeeeeeeddd.....eeeseseaadeeelkeeal 74 
                  +++le ++ v a+   ++d++dGf +D+++++e+ + + +eeee+     +     ++e e e +  e l++ea 
   CDO69645.1  44 RAFLEAAEMVDADPDVIEDLLDGFpVDSSDDDEDGNVDVEEEEENT----GaapavDAERERERDGHERLRPEAS 114
                  789*********************7774333333333222222222....1223334445555555666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4259.55
//
Query:       CDO69646.1  [L=649]
Description: hypothetical protein BN946_scf184851.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 4317.31
//
Query:       CDO69647.1  [L=947]
Description: hypothetical protein BN946_scf184851.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.22   11.6   4.0       0.88    9.7   0.4    3.5  3  DUF357          Protein of unknown function (DUF357)
       0.49   10.5   6.0        1.3    9.1   6.0    1.7  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
        2.7    8.7   8.8       0.52   11.0   0.1    3.7  3  U1snRNP70_N     U1 small nuclear ribonucleoprotein of 70kDa M
        4.1    7.2  32.7       0.37   10.7   1.0    4.6  4  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> DUF357  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   6.2e+02       4      25 ..      25      46 ..      24      57 .. 0.87
   2 ?    9.7   0.4    0.0002      0.88       9      47 ..     649     688 ..     641     693 .. 0.83
   3 ?   -2.4   0.1       1.2   5.2e+03       2      40 ..     729     767 ..     729     771 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                HHHHHHHHHHH.....TS---H CS
      DUF357  4 rlleealekvkiapdeesplge 25
                rl+++a ++++ apd++spl++
  CDO69647.1 25 RLAKKATQDASGAPDKSSPLSN 46
                6899***************985 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
                 HHHHHH......TS---HHHHHHHHHHHHHHHHHHHHHHT CS
      DUF357   9 alekvkiap.deesplgeaaeevlemaesYleDakyflek 47 
                 al+k+  a+ +e+ +++++ e+++e ae+Yl+ a+ +l++
  CDO69647.1 649 ALRKAAAAElKENVEIRKEVEDLVEDAEKYLRGAEKYLAN 688
                 566666666679999**********************986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHH.....TS---HHHHHHHHHHHHHHHH CS
      DUF357   2 YirlleealekvkiapdeesplgeaaeevlemaesYleD 40 
                 Y+  l++ l++vk  +de + + + a+  + +  +Yl D
  CDO69647.1 729 YEGVLNKELAEVKKVVDEVKDIVDRAQADIGLDYAYLDD 767
                 788899999999977777777777666666666666665 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.0   0.00029       1.3      66     150 ..     596     692 ..     573     717 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00029
     UPF0242  66 ekskleekeaklteldeglktkeealeelqee.eeeLkee............ldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqel 150
                 e++  eekea l + +e+ ++++  +e +  e e++L e+            ++ ++ + +   +en +++++ e+ +ed e++++ +e+ La+ q+ 
  CDO69647.1 596 ESESEEEKEARLRARREKNAQNRADIERRHTEwERKLSERiaankkalrkalVALRKAA-AAELKENVEIRKEVEDLVEDAEKYLRGAEKYLANLQKE 692
                 7888999*********9999999999999877245566667777777666644444444.44445677888888888888888888888877765543 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2       0.2   8.9e+02      49      77 ..      62      90 ..       8      97 .. 0.67
   2 ?   11.0   0.1   0.00012      0.52      48      89 ..     574     629 ..     528     647 .. 0.68
   3 ?   -1.3   0.5      0.81   3.6e+03      36      57 ..     679     700 ..     653     723 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
  U1snRNP70_N 49 deeeqeppektetkeekkererkekkekk 77
                 ++  + +p+++++  ++k+++  +kk +k
   CDO69647.1 62 NKALEASPKGVKSTTKQKQKKSGKKKSNK 90
                 44455666667777777777666666665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
  U1snRNP70_N  48 e..............deeeqeppektetkeekkererkekkekkeekleealeeyd 89 
                                  + +++ ++++e ++e + r r+ek++++ + +e++  e++
   CDO69647.1 574 LtddlfaepgsepssASAPAPVESESEEEKEARLRARREKNAQNRADIERRHTEWE 629
                  05555555555553333344445555555666777888999999999999999996 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.81
  U1snRNP70_N  36 itGvaaflselkedeeeqeppe 57 
                  + G  ++l++l+++++ +e+++
   CDO69647.1 679 LRGAEKYLANLQKETRSPEEKK 700
                  3444444444433222222222 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.0   0.00078       3.5      71     178 ..     224     351 ..     208     362 .. 0.55
   2 ?   10.7   1.0   8.2e-05      0.37      71     176 ..     399     504 ..     384     549 .. 0.76
   3 ?   -2.1  15.9      0.66   2.9e+03      78     145 ..     606     679 ..     597     798 .. 0.65
   4 ?   -2.3   0.0      0.74   3.3e+03      91     110 ..     811     830 ..     804     833 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00078
                     HHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHH......................HHHHHHHHHHHH---- CS
  Apolipoprotein  71 lrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelr......................qklaerleelkeslap 143
                     + + l py+++  +     + + q++ ++y + + e++ ++ ++ +  + p++ +++                      +k+ e+++el++  ++
      CDO69647.1 224 YERLLGPYLRQAIAT----LAQWQRKARPYVALAAEKTYDGYQRARPYVRPIWAKVKvivaqllamlgeqrrqfvdphvKKIWEHVKELSSGKHQ 314
                     444555555555443....3344555555555544444444444444444444444444432222222222222255445777777777777666 PP

                     -..---..--SSSHHHHHHHTS-TTSHHHHHS--XXX CS
  Apolipoprotein 144 haeeve..erlssrveelrekleeqaeelrerleanl 178
                      + +++   ++ss+++ ++ +++++  +l  +l  ++
      CDO69647.1 315 GSSASQlrKTASSQLSKASSQVSQASVKLSSSLSSIA 351
                     6555554477777777777777777766666666555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.2e-05
                     HHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-T CS
  Apolipoprotein  71 lrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelreklee 165
                      ++  + +++++   ++ ++++++ + +  +  +  +l++ v+a  +   p+v +l ++  + + + k+ +   aee+++ +ss++e + +++  
      CDO69647.1 399 AKSVASVAADKVSSAAEGASDAVKATASMISGAVSPSLSSVVSAASDAAVPLVSSLASSASSAVHASKDAASSVAEEIPTSASSQAESATAAVRH 493
                     44444445555555555566666666666666666666666888888888888888888888888888888888888888888888888888888 PP

                     TSHHHHHS--X CS
  Apolipoprotein 166 qaeelrerlea 176
                     + ++l   +  
      CDO69647.1 494 AGSALSSAATS 504
                     87777766655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.66
                     HHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHH......HHHHHHHHHHH-----. CS
  Apolipoprotein  78 yteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrq......klaerleelkeslapha 145
                      ++++re+ a++  +++++ ++  ++l er++++ +al++ l +++  + +      ++++++e+l e ++ ++
      CDO69647.1 606 RLRARREKNAQNRADIERRHTEWERKLSERIAANKKALRKALVALRKAAAAelkenvEIRKEVEDLVEDAEKYL 679
                     45566666666666666666666666666666666666666666666666411112223333333333333332 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.74
                     HCCHHCHCCHCHHHHHHHHH CS
  Apolipoprotein  91 eelqeqlavyaeelrerler 110
                      +lq+ ++ + +++++rl+r
      CDO69647.1 811 ADLQNEVEDVVAGFQTRLRR 830
                     56777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1997  (0.111384); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6377.49
//
Query:       CDO69648.1  [L=287]
Description: hypothetical protein BN946_scf184851.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-16   58.1   0.8      1e-13   51.2   0.2    2.4  2  Chromo_shadow  Chromo shadow domain
    5.2e-12   45.5   1.1      1e-11   44.6   0.1    2.1  2  Chromo         Chromo (CHRromatin Organisation MOdifier) doma
  ------ inclusion threshold ------
        2.1    6.9  11.2       0.06   12.0   3.4    1.9  2  Hamartin       Hamartin protein
        4.1    7.6  11.7       0.52   10.4   3.8    3.6  3  AT_hook        AT hook motif


Domain annotation for each model (and alignments):
>> Chromo_shadow  Chromo shadow domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0052        23       1      25 [.      61      89 ..      61     100 .. 0.77
   2 !   51.2   0.2   2.2e-17     1e-13       1      53 []     220     277 ..     220     277 .. 0.99

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0052
                   TTTTTEEEEEE...TS-EEEEEEETT.S- CS
  Chromo_shadow  1 epekiigavdt...sgelmflikWkn.ge 25
                   e+e i++a      +g   +l+kWk+ g+
     CDO69648.1 61 EIEAILDAKHGtfpEGRVGYLVKWKGyGD 89
                   57888888644588999********9644 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 2.2e-17
                    TTTTTEEEEEE.....TS-EEEEEEETTS-EEE.EEHHHHHHHSHHHHHHHHHCT-XX CS
  Chromo_shadow   1 epekiigavdt.....sgelmflikWkngekaelvpskeanqkcPqkvikFYEerltw 53 
                    ++e++++++dt     +g+l++++++k+g+ +   +s ++++k+P k+i+FYE++l+w
     CDO69648.1 220 SWENLVESIDTverteDGNLYVYFTLKHGKGHAREKSDICKKKMPYKLIEFYESNLRW 277
                    7********************************************************9 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   2.2e-15     1e-11       1      54 []      60     113 ..      60     113 .. 0.88
   2 ?   -2.8   0.1       1.4   6.4e+03      32      36 ..     219     223 ..     216     234 .. 0.64

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-15
                 EEEEEEEEEE...EETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo   1 yeVerIidhr...tdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkkr 54 
                 ye+e I+d +   + +++    YlVKWkg+ +++n+W +e++ +   qelideF+++
  CDO69648.1  60 YEIEAILDAKhgtFPEGRV--GYLVKWKGYGDEHNSWVDEKDAAGA-QELIDEFWRK 113
                 799****999785555555..***********************98.*******985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 TEEEE CS
      Chromo  32 ntWEp 36 
                 ++WE+
  CDO69648.1 219 ASWEN 223
                 57886 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0     0.072   3.2e+02     540     577 ..      15      51 ..       2      79 .. 0.35
   2 ?   12.0   3.4   1.3e-05      0.06     338     446 ..     121     225 ..      89     268 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.072
    Hamartin 540 sskeaesslekekscsakqsftpieqklesskdcpade 577
                 s+ e+++s++k++s++ k+++ + +  ++++++ +  +
  CDO69648.1  15 SENEQPRSTRKQASSTSKNAS-KDKGRVDGEDEEEGSD 51 
                 222222222222222222222.2222222222211111 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.3e-05
    Hamartin 338 ttppsspgivpttelelsssasllsskvsstpeaagkatpe.tTPakssrklppslsesavvvalpassrksspprkdeksesskpdlskqeev.enek 434
                   +p+ +  +p ++ ++s +    + + + +p++  ++ p+ +TPa++ +  +++  es  ++++p++s   s+ ++ ++ +s+ + + + +e+ ++ +
  CDO69648.1 121 KSEPKAK-ATP-KPRKSSVKDVDSDVEETAPPKK--RGRPSkSTPARDNS--EEQDEESVPKQKKPRKSAGGSAAKTTSRRKSNASAMDEDDETfADMR 213
                 3344433.334.3466777777777788888886..999*99******99..45555555555555555555555555555555555555555555555 PP

    Hamartin 435 eleeslkskssv 446
                  ++++++ ++ v
  CDO69648.1 214 RFKDAASWENLV 225
                 555544422222 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.48   2.2e+03       7      12 ..     132     137 ..     132     138 .. 0.83
   2 ?   10.4   3.8   0.00012      0.52       1      11 [.     150     160 ..     150     162 .. 0.87
   3 ?   -0.7   0.0      0.45     2e+03       7      12 ..     180     185 ..     180     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.48
     AT_hook   7 PrKaat 12 
                 PrK+++
  CDO69648.1 132 PRKSSV 137
                 9**987 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00012
     AT_hook   1 kRkRGRPrKaa 11 
                 ++kRGRP K+ 
  CDO69648.1 150 PKKRGRPSKST 160
                 79*******86 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.45
     AT_hook   7 PrKaat 12 
                 PrK+a+
  CDO69648.1 180 PRKSAG 185
                 9**986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 2004.54
//
Query:       CDO69649.1  [L=160]
Description: hypothetical protein BN946_scf184851.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-14   53.9   0.0    1.8e-14   53.3   0.0    1.3  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
     0.0018   18.3   0.0     0.0029   17.6   0.0    1.3  1  RRM_3        RNA binding motif
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.026   14.1   0.0    1.2  1  RRM_5        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
       0.17   11.9   0.2        0.3   11.1   0.2    1.5  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   4.1e-18   1.8e-14       1      69 [.      59     128 ..      59     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.1e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+V+++++++tee++ + F +fG+ik++ l  d +tg  kg+a Ve+e+  +A++A++   g++l  +++
  CDO69649.1  59 LMVTGVHEEATEEDVMDKFAEFGEIKNLHLNLDrRTGYVKGYALVEYETMAEAQAAIDGASGTTLLEQTI 128
                 78************************************************************99988877 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.5e-07    0.0029       1      60 [.      56     121 ..      56     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.5e-07
                 --EEEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEE......ESSHHHHHHHHHHHHHC CS
       RRM_3   1 GvilklsGlnkelsredikellsklgevayvdyekgdkegevr......Fkedeeakkalekatea 60 
                 G il+++G+++e + ed+ + ++++ge++   ++ +  +g+v+      +++  ea++a++ a  +
  CDO69649.1  56 GWILMVTGVHEEATEEDVMDKFAEFGEIKNLHLNLDRRTGYVKgyalveYETMAEAQAAIDGASGT 121
                 88********************************99999997544444488888899998877655 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.9e-06     0.026      15      97 ..      45     131 ..      29     135 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.9e-06
       RRM_5  15 tgspgaagvaegsVllVyglepdkvnldklFnlfclYgnvervkflktk.....ketalvqmgdasaveravqHLnnaklfgkrleva 97 
                 t+++ aa   eg +l+V+g++++  + + +   f+ +g+++ + +   +     k++alv+     +++ a++  ++++l ++ ++  
  CDO69649.1  45 TSETRAARSVEGWILMVTGVHEEA-TEEDVMDKFAEFGEIKNLHLNLDRrtgyvKGYALVEYETMAEAQAAIDGASGTTLLEQTIQCD 131
                 3444555666999*******9875.66778899********999854332333389************************99999865 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   6.7e-05       0.3       5      51 ..      60     113 ..      55     115 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.7e-05
  Nup35_RRM_2   5 aVsGydteli.elVlehFasfGeIvkhyvp......kevsvmyvkfesekdaek 51 
                   V+G+  e   e+V + Fa+fGeI +            + ++ v++e+  +a+ 
   CDO69649.1  60 MVTGVHEEATeEDVMDKFAEFGEIKNLHLNldrrtgYVKGYALVEYETMAEAQA 113
                  699997765549**************7666445555334566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1224.63
//
Query:       CDO69650.1  [L=205]
Description: hypothetical protein BN946_scf184851.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   24.9   9.9     0.0016   18.5   1.1    2.5  2  zf-MYND   MYND finger
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.22   11.9   0.0    1.5  1  DUF3846   Domain of unknown function (DUF3846)


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.1   1.7e-07    0.0016      13      29 ..       3      19 ..       2      28 .. 0.87
   2 !   10.5   2.0   5.5e-05       0.5      25      38 .]      35      48 ..      34      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-07
                -TTTS-SEESSHHHHHH CS
     zf-MYND 13 CagCksvfYCskeCqra 29
                C++C++++YCs e+ ++
  CDO69650.1  3 CSRCQNAWYCSPEHLQR 19
                *************9765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.5e-05
                HHHHHCHHHHCCCH CS
     zf-MYND 25 eCqradwksHkteC 38
                +C  +dw++H++eC
  CDO69650.1 35 DCDLQDWPRHRQEC 48
                7999********** PP

>> DUF3846  Domain of unknown function (DUF3846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.22      50      81 ..     148     182 ..     133     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
     DUF3846  50 lkglpvNraigd...geiadviaGtflitglddee 81 
                  +g+p+Nrai +   g+++++ +G++++  ++ ++
  CDO69650.1 148 QRGSPINRAIHRittGHATKPWCGPVVVLKFNGSR 182
                 589************9************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1549.67
//
Query:       CDO69651.1  [L=180]
Description: hypothetical protein BN946_scf184851.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.04   13.4   3.8      0.073   12.5   3.8    1.3  1  CAP_N           Adenylate cyclase associated (CAP) N terminal
      0.065   12.2   6.3      0.084   11.9   6.3    1.1  1  PAG             Phosphoprotein associated with glycosphingoli
        3.3    7.4   5.8        4.5    7.0   5.8    1.2  1  Pox_Ag35        Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.8   1.2e-05     0.073     228     270 ..     113     154 ..     102     164 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
                 .......SSC--XXXXXXX....XXXXXXXX.....XXXXXXX CS
       CAP_N 228 aeealkaaaaaasaaaaggpppPpPpPppasvfeeesaaasas 270
                 ae+a++ a + as +++++ppp +PpPpp ++++e+++ ++++
  CDO69651.1 113 AEKAAQ-ARKMASGTTSNHPPPQQPPPPPEQTVDENEEVENDE 154
                 222222.222222333333444455555555554443222222 PP

>> PAG  Phosphoprotein associated with glycosphingolipid-enriched
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.3   1.4e-05     0.084     234     289 ..     114     167 ..     106     177 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.4e-05
         PAG 234 kKsrqsanaesklrssadveeeaPPPvPvKlLDenenvqekegeaeaeeeategas 289
                  K+ q+ ++ s + s++    + PPP P++ +Dene v+++e ++ +++e  +g+ 
  CDO69651.1 114 EKAAQARKMASGTTSNHPP-PQQPPPPPEQTVDENEEVENDE-NEGDDDEIDDGED 167
                 5777777777777666655.5667777**********99998.3333333333332 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.8   0.00075       4.5      43     109 ..     101     168 ..      96     180 .] 0.59

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00075
    Pox_Ag35  43 DieiP.spkqekkkrattprkkpakkekkkkeeekeeaaeeeeledseedeenendedeseesvqaee 109
                 D+  P  + +e+ ++a   rk ++  ++++ + +++ ++ e+ ++++ee e++en+ d+ e    ++e
  CDO69651.1 101 DLLFPvDQAREEAEKAAQARKMASGTTSNHPPPQQPPPPPEQTVDENEEVENDENEGDDDEIDDGEDE 168
                 56667333334444455666667777777777777777777777777776666665555544433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1284.40
//
Query:       CDO69652.1  [L=566]
Description: hypothetical protein BN946_scf184851.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-37  127.4   0.0    1.8e-36  125.6   0.0    2.0  3  Pro-kuma_activ  Pro-kumamolisin, activation domain
      0.006   15.9   1.3      0.023   14.0   0.7    2.3  2  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0     2e-40   1.8e-36       2     142 .]      40     182 ..      39     182 .. 0.98
   2 ?   -2.8   0.0       0.8   7.2e+03     119     131 ..     223     245 ..     219     305 .. 0.58
   3 ?   -4.0   0.0       1.8   1.6e+04      53      75 ..     426     448 ..     425     453 .. 0.78

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 2e-40
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasr..hsdtkgwiafsatv 94 
                     gw   g+a+++ +  +rigLkq + ++l ++l +vsdp++++yg+hlt+e+va+l+ap+++++d V++wL  +g+      +s  ++w++++++v
      CDO69652.1  40 GWELHGPAPADYTFDMRIGLKQDKFDDLVSALYEVSDPSHAKYGQHLTKEDVAALVAPHPDSVDLVESWLSTHGLDPLAgkRSHAGDWVTIRVSV 134
                     79999***********************************************************************999999************* PP

  Pro-kuma_activ  95 aqverllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     aq+e++l+t+++ Y+h +++ +++r+ +yslP  l++++  + pt+ f
      CDO69652.1 135 AQAEKMLGTKYNVYRHGNSDDYVIRTMNYSLPSVLHEHIAVVAPTTYF 182
                     *********************************************976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.8
  Pro-kuma_activ 119 rcdeyslPealk..........n 131
                      c+++++P++l+           
      CDO69652.1 223 SCNTAITPACLRalynttsytpA 245
                     57788888888755555544440 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.8
  Pro-kuma_activ  53 vaelfapseeaidaVrnwLessg 75 
                     + ++fa  + +++aV  +L + g
      CDO69652.1 426 FSNHFARPSYQSTAVSTFLNKLG 448
                     56778888888999999998876 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.7   2.5e-06     0.023     186     262 ..     250     499 ..     225     504 .. 0.52
   2 ?   -1.5   0.0      0.14   1.2e+03     204     242 ..     504     542 ..     501     546 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-06
                   TCEEEEEES........................................................................................ CS
                   xxxxxxxxx........................................................................................ RF
  Peptidase_S8 186 nvitvgayt........................................................................................ 194
                   n+++v++y                                                                                         
    CDO69652.1 250 NSLGVAGYLdefanhavgssfttvevngggddqsdpgveanldiqytegisfptpniyystggsppfipddetptntnepyldwlnfildqdsipqt 346
                   5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

                   .....................................................................................TTSSB-TT--B- CS
                   .....................................................................................xxxxxxxxxxxx RF
  Peptidase_S8 195 .....................................................................................tegkiapfSsrG 206
                                                                                                              ++ s+ 
    CDO69652.1 347 fttsygddeqtvpldyatqvcnmfaqlgargssimfssgddgvgggncetndgtntvrfqpnfpvrvnpevavsfsgggfsnhfaR----PSYQSTA 439
                   55555555555555555555555555555555555555555555555555533333333333344433333333333333333331....2222222 PP

                   TT...........-EEEE-S-CCCCCCCCCHHHTTTHH......EEEE-SHHHCHHHHHHHHHHHH CS
                   xxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 207 pssd....gklkpdivapGgnivstwsrqsnnsaglss......yqsmsGTSmAsPnaagaaAlll 262
                    s+     g+ +  +  +G+ +v++ + ++       +      ++s+ GTS++sP  ag++All 
    CDO69652.1 440 VSTFlnklGRTNAGLFKYGSGMVAKPQGENF------QvviggrVESVAGTSASSPTFAGVIALLN 499
                   2222222244445555555554444444443......04444559*******************96 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.14
                   -B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 204 srGpssdgklkpdivapGgnivstwsrqsnnsaglssyq 242
                   srG++  g l+p i   G+ ++ +++  sn+++g+ +++
    CDO69652.1 504 SRGKTPLGFLNPLIYSSGVGGFNDITSGSNPGCGTNGFT 542
                   7999999*************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3912.78
//
Query:       CDO69653.1  [L=642]
Description: hypothetical protein BN946_scf184851.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   63.8   0.0    6.9e-16   57.8   0.0    2.4  3  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0016        28      74     118 ..      99     141 ..      48     173 .. 0.79
   2 !   57.8   0.0   3.9e-20   6.9e-16     246     451 ..     273     484 ..     267     495 .. 0.80
   3 ?   -2.1   0.0     0.055   9.9e+02     493     519 .]     497     522 ..     487     522 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0016
                      HHH--HHHHHHHHHHHHHHHHHCHSSS-B-GCCTHHSSEETTEES CS
  Glyco_hydro_127  74 astkdkelekrldrlvdelakaQqedGYlsavtelkneakkeawa 118
                         +d+++  ++++++d +   Q++dG+l++ ++    +++  w 
       CDO69653.1  99 ILLDDPKIMSQTQQFLDYVLDHQDSDGWLGPEVNTT--KPRYLWG 141
                      4568*************************9988777..6666665 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 3.9e-20
                      HHHHCTTHCCHHHHHHHHHHHHHHCB-TTS-B-BCEEECE--STT--HCCCH--BHHHHHHHHHHH.HHHHHCH--CHHHHHHHHHHHHTTGGG CS
  Glyco_hydro_127 246 vyeetgddkllkaaerlwdnvvtkkmyvtGGigakhdgEaFgppyelpnrlayaEtCasinmlkla.rrlleltpdakyadvlEralyNsilag 338
                       y++t++++ l+aa + wd + + +    G   a     ++    e  +     E C  ++ ++ + + l+++ +d+k+ad +Er  yN + a+
       CDO69653.1 273 TYRFTHNQSDLDAASKGWDLLFQYHGRPSGIYAAD----EYLAGLEAVR---GTELCLVVETMFSSgSYLYQVIGDPKFADRVERITYNALPAE 359
                      57788888888888888888888776655444444....3444444332...37******999876367************************* PP

                      B-TTTS-BBSB--STTTBS--SS...........SC-BTTTTT-CHHHHHHHHCCGGGGGSEEEE.TTEEEE-S-S.SEEEEECGCT.-EEEEE CS
  Glyco_hydro_127 339 vsldgksffYvnplesgskklrk...........lystkwdscaCCppnglrtvaklgeyiYaes.ddtvyvnLyi.aselklklkg.kevele 418
                      +  d  s  Y    ++   k+              +   + + +CC  n+ + ++k+ + ++ ++ d++  v+ y+ + +++l l++ ++v++ 
       CDO69653.1 360 LTGDMWSRQYLQQQNQIAAKNMTpnpfpndgpysNVFGLEPNYPCCTVNHPQGWPKFISNAFVTTpDQKSLVHVYLgPFNVNLTLANeNKVSVA 453
                      *****99999887755444444457899999655444556799***************9999999777999999972679999999999***** PP

                      EEE-TTSSSEEEEEEEETT--CEEEEEEE-TT- CS
  Glyco_hydro_127 419 qetnyPwegkvkltvktqkkaeftlklRiPgWa 451
                       +t yP++++ + t+   +++ ft ++RiP+W 
       CDO69653.1 454 VDTLYPFSDSLATTI--TAEKPFTYYVRIPSWV 484
                      ***************..78899**********4 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.055
                      EEEEE--TT-CCGTTEEEEEETTEEEE CS
  Glyco_hydro_127 493 vrleeanpkvrddankvavlrGPlvla 519
                      + +++a +     +++ av rGPl +a
       CDO69653.1 497 LMVVRA-SAESRPHSSIAVHRGPLHYA 522
                      444444.3345667899*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 4134.59
//
Query:       CDO69654.1  [L=328]
Description: hypothetical protein BN946_scf184851.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-07   30.5   0.3    5.9e-07   29.7   0.3    1.4  1  Sds3      Sds3-like


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.3   3.3e-11   5.9e-07       5     113 ..      62     175 ..      58     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.3e-11
        Sds3   5 lskiessFaelRD...klYrerLteLqteltllqq..GthpellrklrdleeerDaeLkrlrlreeyqlkriekefkadiekakqeheklvkllkekly 98 
                 + ki ++ a+ RD   ++Y e +++L     +l+    t p ++ +l+ l+ er a L+ +++ e++ l+ +++ +++++e++++e+++  + ++e+++
  CDO69654.1  62 IGKISKEMADRRDeigRHYTETISDLHSISIQLSTrpETLPAYNLRLYPLSLERGALLSSIAFQERHALQAVQTAYDEERERVEEEWRRGRERIRERML 160
                 6677777777777444477776655554433333212578999999***************************************************** PP

        Sds3  99 eelekkikrLkeekl 113
                 e +e++++r  eek+
  CDO69654.1 161 EGIEERRRRAREEKE 175
                 **************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2288.43
//
Query:       CDO69655.1  [L=249]
Description: hypothetical protein BN946_scf184851.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-23   82.2   0.0    4.2e-23   82.0   0.0    1.0  1  DLH            Dienelactone hydrolase family
     0.0062   15.8   0.0     0.0077   15.5   0.0    1.1  1  Acyl_transf_2  Acyl transferase


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   4.7e-27   4.2e-23       2     215 ..      28     247 ..      27     249 .] 0.84

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 4.7e-27
         DLH   2 daylatpkna..kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelv.skvaeekvlddlkaavaylksvpevs 96 
                 d y+atpk    k +vv+ + ++fG++ +n    ++  a++G+ ++ Pdl+ ++a  p+d+ +  ++ ++ + +k   ++v  +++  +++lk+ +   
  CDO69655.1  28 DSYVATPKGDypKDKVVLFLSDVFGLRlQNNLLLADDYARNGFKVVEPDLFEGDA-LPEDALHSGKVDFGAWlAKHGADHVAGIVRTVIDALKAEG--- 122
                 78******999899**************88889**********************.6888877777765544156668889999999999999999... PP

         DLH  97 tkkvgvvGfCmGGalalllaaevpevdaavafYG...lspekeleeaakikapilalfgeeDefipadevekleealkaan.vd.lelkvYpgagHaFa 190
                 + k++++GfC+G++ a++la ++ e++ +++ ++   + p     +a ++kap+l+   e D+ +p+d+  k +e l   + ++ +    ++g +H+Fa
  CDO69655.1 123 VTKFAAIGFCFGARPAFDLAFNN-EIQVVAVSHPsllKIPADLERYASQSKAPLLINSCETDPQFPQDAQAKADEILGGGKfAPgYVRTYWEGCTHGFA 220
                 89*********************.6*********66333344445789********************9999999987555233144556699****** PP

         DLH 191 ndsre..syneeaaedawervlelfkq 215
                  + +     +++ +e a+++++e++ +
  CDO69655.1 221 VRGDMsdPKVKAGKEGAFKATVEFLIK 247
                 *9988668899999*********9965 PP

>> Acyl_transf_2  Acyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.6e-07    0.0077      18     125 ..      30     148 ..      23     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.6e-07
                    EEE---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEE.....E---B-------------HHHHHHH.......HHHHHHHHHHTT-- CS
  Acyl_transf_2  18 wetlpkekvdkrnntiviasgfarrmdhfaglaeylsengfhvir.....ydslnhvglssgeidefsmsvgkks.......lltvidwlkekkin 101
                    + ++pk + +k +  + ++  f  r++    la+  ++ngf+v+       d+l    l sg++d f   + k+        + tvid lk +++ 
     CDO69655.1  30 YVATPKGDYPKDKVVLFLSDVFGLRLQNNLLLADDYARNGFKVVEpdlfeGDALPEDALHSGKVD-FGAWLAKHGadhvagiVRTVIDALKAEGVT 124
                    5678**************************************98622211578889999****98.5444444431222232569*********** PP

                    -EEEEEETTHHHHHHHHTTTS--S CS
  Acyl_transf_2 102 nigliasslsariayevvaeiels 125
                    +   i   + ar a++++ + e+ 
     CDO69655.1 125 KFAAIGFCFGARPAFDLAFNNEIQ 148
                    ***************988665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1827.64
//
Query:       CDO69656.1  [L=539]
Description: hypothetical protein BN946_scf184851.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3543.46
//
Query:       CDO69657.1  [L=126]
Description: hypothetical protein BN946_scf184851.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-08   34.4   0.0    4.1e-05   23.4   0.1    2.2  2  TPR_2       Tetratricopeptide repeat
    5.7e-06   25.9   0.1      0.002   17.9   0.1    2.2  2  TPR_1       Tetratricopeptide repeat
    0.00016   22.1   0.0    0.00027   21.4   0.0    1.4  1  TPR_19      Tetratricopeptide repeat
    0.00077   19.5   0.0     0.0019   18.3   0.0    1.7  1  TPR_8       Tetratricopeptide repeat
     0.0008   19.4   0.0     0.0017   18.3   0.0    1.5  1  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
      0.005   17.6   0.1      0.026   15.3   0.0    2.1  2  TPR_14      Tetratricopeptide repeat
     0.0098   16.1   0.0      0.015   15.5   0.0    1.3  1  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.069   13.1   0.2        5.1    7.1   0.0    2.4  2  TPR_10      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00073       1.6       3      30 ..      25      52 ..      23      55 .. 0.92
   2 !   23.4   0.1   1.8e-08   4.1e-05       2      34 .]      58      90 ..      57      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00073
       TPR_2  3 alynlGlayyklgdyeeAleafekAlel 30
                +l n+  a y++gd+  Al + e +++l
  CDO69657.1 25 ILSNRSAAFYEAGDFVSALVDAETVIQL 52
                5899*******************99998 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.8e-08
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                +++++ ++a++kl++y+eA++a +  l+ +Pnn
  CDO69657.1 58 KGHFRKARALMKLDRYQEAKNAIQLGLSFEPNN 90
                689****************************98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0045        10       9      31 ..      31      53 ..      24      54 .. 0.87
   2 !   17.9   0.1   8.9e-07     0.002       2      34 .]      58      90 ..      57      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0045
                HHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  9 nayfklgkydeAleyyekALeln 31
                +a+++ g++  Al + e +++l 
  CDO69657.1 31 AAFYEAGDFVSALVDAETVIQLK 53
                799*****************996 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8.9e-07
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnPnn 34
                k +++++ a++kl +y+eA  + +  L+ +Pnn
  CDO69657.1 58 KGHFRKARALMKLDRYQEAKNAIQLGLSFEPNN 90
                789****************************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.2e-07   0.00027       2      68 .]      34     100 ..      33     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-07
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 +++gd+ +Al   e ++q +   +    + A+al++l +++eA+++++  +  +p+++++++ lA +
  CDO69657.1  34 YEAGDFVSALVDAETVIQLKRPWSKGHFRKARALMKLDRYQEAKNAIQLGLSFEPNNPEMSQMLADI 100
                 689999999999999999977766667778*******************************999975 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.3e-07    0.0019       3      34 .]      59      90 ..      57      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.3e-07
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34
                 +++++++++kl +y+eAk +++  l+ +p+n
  CDO69657.1 59 GHFRKARALMKLDRYQEAKNAIQLGLSFEPNN 90
                6799*************************996 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.8e-07    0.0017       8      48 ..      64     104 ..      59     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.8e-07
                 HHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedki 48 
                 A + +kl +Y+eA++ ++  L+ EP+n  + +  + i+ +i
  CDO69657.1  64 ARALMKLDRYQEAKNAIQLGLSFEPNNPEMSQMLADIDARI 104
                 56889************************999998888887 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   2.7e+03       9      25 ..      31      47 ..      26      59 .. 0.71
   2 !   15.3   0.0   1.2e-05     0.026       6      43 ..      62      99 ..      57     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
      TPR_14  9 eallalGdpdeAiallr 25
                +a++++Gd+  A+  ++
  CDO69657.1 31 AAFYEAGDFVSALVDAE 47
                57788888877765555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.2e-05
      TPR_14  6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43
                + a+al+ l++++eA ++ +  l+  P+++e   +la+
  CDO69657.1 62 RKARALMKLDRYQEAKNAIQLGLSFEPNNPEMSQMLAD 99
                679******************************99997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.9e-06     0.015      32      79 ..      32      80 ..      14      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.9e-06
                HHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3 32 clylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79
                ++y++g++ +A+  +++  +l+    + ++ +A++l kL++y+eA +a+
  CDO69657.1 32 AFYEAGDFVSALVDAETViQLKRPWSKGHFRKARALMKLDRYQEAKNAI 80
                789******************************************8886 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0023       5.1       3      33 ..      24      54 ..      22      54 .. 0.92
   2 ?    3.7   0.1     0.027        60       9      23 ..      64      78 ..      63      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0023
      TPR_10  3 sslnNLanalrqrgrydeAealleealairr 33
                ++l+N ++a ++ g++  A+ ++e ++++ r
  CDO69657.1 24 MILSNRSAAFYEAGDFVSALVDAETVIQLKR 54
                789************************9865 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.027
      TPR_10  9 analrqrgrydeAea 23
                a+al ++ ry+eA +
  CDO69657.1 64 ARALMKLDRYQEAKN 78
                899**********77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1001.13
//
Query:       CDO69658.1  [L=613]
Description: hypothetical protein BN946_scf184851.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-47  161.6   0.0      3e-47  160.6   0.0    1.5  2  DEAD            DEAD/DEAH box helicase
    6.9e-31  106.9   0.0    2.6e-30  105.0   0.0    1.9  2  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.075   13.0   0.0       0.28   11.1   0.0    2.0  2  ResIII          Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0     5e-51     3e-47       1     175 [.     167     355 ..     167     356 .. 0.93
   2 ?   -2.9   0.0      0.86   5.1e+03      98     113 ..     406     421 ..     376     461 .. 0.62

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 5e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.................kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvllii 82 
                 t++Q+ +ip++  g+d++++a+TGsGKT+ fl+p+l++ +++                  +k  p ali++PtreL+ q++++++kf+    +r  +++
  CDO69658.1 167 TPVQKYSIPIVAAGRDLMACAQTGSGKTGGFLFPILSASFTNgprappveatpgvgygrSRKAYPTALILAPTRELVSQIHEEARKFCYRSWVRPAVVY 265
                 79**********************************9888778999999999999999888999*************************9889****** PP

                 TTSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  83 ggvaardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 gg + ++ql+++++g+d++ +tpgrl+dl+++g+++l +vr+lVlDEadr+ld+gf+++i+ri++  +     g ++rq++++SAT+p+d++ 
  CDO69658.1 266 GGADINQQLRQIERGCDLLSATPGRLVDLIERGRISLANVRYLVLDEADRMLDMGFEPQIRRIVQGED---MPGVQERQTLMFSATFPRDIQM 355
                 **************************************************************887772...22335678**********9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.86
                 CSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddlls 113
                 + +v+  ++r++d+ls
  CDO69658.1 406 LTLVFVETKRMADMLS 421
                 5555555555555553 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.5     3e+03      17      61 ..     231     279 ..     225     288 .. 0.72
   2 !  105.0   0.0   4.3e-34   2.6e-30       2     111 .]     391     499 ..     390     499 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.5
                 SEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  17 gkilifvntidrlek....vklllekkgikvavlhgelpqnereeileq 61 
                  ++li ++t++ +++    ++ ++ ++ ++ av++g    n++++ +e+
  CDO69658.1 231 PTALILAPTRELVSQiheeARKFCYRSWVRPAVVYGGADINQQLRQIER 279
                 5688999999966444446666666667889999999888888888876 PP

  == domain 2  score: 105.0 bits;  conditional E-value: 4.3e-34
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 k + ll+ l + + +g +l+fv+t++++++++ +l  ++i ++ +hg+ +q+ere +l+ f+ g++ +L+at va+rG+dip+v++V+n+dlp ++++y
  CDO69658.1 391 KRSVLLDVL-QAQGTGLTLVFVETKRMADMLSDFLLGNNIPATSIHGDRTQREREMALQTFKTGRTPILVATAVAARGLDIPNVTHVVNYDLPSDIDDY 488
                 677888888.89999*************99555555667************************************************************ PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 ++riGRtgRag
  CDO69658.1 489 VHRIGRTGRAG 499
                 *********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.8e-05      0.28      30     170 ..     186     350 ..     171     351 .. 0.77
   2 ?   -3.9   0.0       1.9   1.2e+04      17      41 ..     384     410 ..     377     414 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.8e-05
                 EESTTSTHHHHH.HHHHHHH-S........................-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B--....... CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee...................kflflvprkslleqtleefkkflseayke.....igkkvsgdkkkakekdstn 103
                  + TG+GKT    + +  + +++g++                     +l+l+p+++l++q  ee +kf      +      g +++++     ++ +  
  CDO69658.1 186 CAQTGSGKTGGFlFPILSASFTNGPRAppveatpgvgygrsrkaypTALILAPTRELVSQIHEEARKFCYRSWVRpavvyGGADINQQ----LRQIERG 280
                 5689*****9885777777778877779999**************9******************999987765544333333334444....4444888 PP

                 -SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHH.....HHT---SEEEEEESS-S CS
      ResIII 104 kkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswrei.....lekfkeavllglTATpe 170
                 +++l +t  +l   +     e+ + +  +  +++ DEa r+ ++    ++r+i     +  ++e   l ++AT++
  CDO69658.1 281 CDLLSATPGRLVDLI-----ERGRISLANVRYLVLDEADRMLDMgfePQIRRIvqgedMPGVQERQTLMFSATFP 350
                 889999999998888.....7777788888899999999999986655888885553333347788899999986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
                 ......TTSEEE..EEESTTSTHHHHH CS
      ResIII  17 eklkskrdkrgl..ikmaTGtGKTlva 41 
                 e +++++++ +l  +  a GtG Tlv 
  CDO69658.1 384 EYVEDQDKRSVLldVLQAQGTGLTLVF 410
                 455534444444344568899988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4644.59
//
Query:       CDO69659.1  [L=291]
Description: hypothetical protein BN946_scf184851.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   17.8   0.4     0.0034   17.2   0.4    1.2  1  GT87      Glycosyltransferase family 87
  ------ inclusion threshold ------
       0.15   12.0  38.3       0.21   11.6  38.3    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   3.7e-07    0.0034     112     225 ..     129     262 ..     128     267 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-07
        GT87 112 tPalfllylllrrr......wralaaaaatalvltalpllllppssleyfletlfdtseri.aedvgnqsllslagllaralalglsavtllwlvl... 200
                 +Pa ++++ll++++        a+aaaaa+++  +++++   p+ +++++++ + +++ ++ a +++ q+ +  +++l+r +a++     l w +    
  CDO69659.1 129 YPAQMPAALLMAHQqqqlrrKAAVAAAAAGGAPNAGTAAGQTPTPQMQNYMQYMYQAQAHLqAQAQQAQQQQQQQQRLSRDAAWSR-TEALGWPISids 226
                 689999999996664444313333333444444455566667799*******999998888988888888899*******999999.677777777778 PP

        GT87 201 ..........vllv.valaavaawrlrrrerllala 225
                           +  + ++++a  ++rl rr+r++ +a
  CDO69659.1 227 rvgdqhreihAPPTeACVLARSWRRLDRRHRAANMA 262
                 888888874433336777777777777888877776 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  38.3   2.3e-05      0.21      57     227 ..      21     208 ..       2     288 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
       TFIIA  57 spqfvlqlpqslkqalqasaaaasqapastsqslpslvipagksvqslt.a..nssaataatfslpakleppvqipagvtlqtasg.........qlyk 143
                  p+  +q+ q+++ a+q+ +a+  +a+a++s + p+ ++++g+s+   t +    sa  +   ++  ++ pp+q+   ++++ + +         q+ +
  CDO69659.1  21 IPPHLQQAYQQAQLAAQQRTATPAPAQAAASPRVPPQTVAHGSSPAAATpEqrPASAVPHPPAQPARQTAPPQQVQQIQQQPRP-QpspapphtpQQPQ 118
                 333333333333333333333333334444444444444444333333322342332333333333334443443332222222.23455555665555 PP

       TFIIA 144 vnv........qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqq.qvqqqqqeesqqaqq 227
                 v+          a+  ++++ +++qq++  + + aa+++  a++a+  +a++++ pq+q     q++ q q+++q+q q+ qqqq+++q+ ++
  CDO69659.1 119 VQLpqgmpggyPAQMPAALLMAHQQQQLRRKAAVAAAAAGGAPNAG-TAAGQTPTPQMQNY--MQYMYQAQAHLQAQaQQAQQQQQQQQRLSR 208
                 5557777787766777777777777776666666666666666665.66677777777722..334333333333332333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2238  (0.124826); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 2054.84
//
Query:       CDO69660.1  [L=432]
Description: hypothetical protein BN946_scf184851.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-61  207.4   0.0    5.1e-61  205.7   0.0    1.9  3  DUF383    Domain of unknown function (DUF383)
      1e-21   76.5   1.1    2.5e-21   75.3   1.1    1.7  1  DUF384    Domain of unknown function (DUF384)
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.69   10.3   0.0    2.4  1  HEAT      HEAT repeat


Domain annotation for each model (and alignments):
>> DUF383  Domain of unknown function (DUF383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.63   3.7e+03      81     111 ..       3      33 ..       1      40 [. 0.69
   2 !  205.7   0.0   8.6e-65   5.1e-61       1     190 []     107     347 ..     107     347 .. 0.94
   3 ?   -2.7   0.0      0.65   3.9e+03      39      39 ..     379     379 ..     355     411 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.63
      DUF383  81 nlsqlpegRelllepqesdkelplqkllpft 111
                 + +ql+e  ++l +++++ +++ l++l+ +t
  CDO69660.1   3 DAAQLKELTQFLRDKNPQVRQIALANLIGQT 33 
                 5667777777777777777777777777666 PP

  == domain 2  score: 205.7 bits;  conditional E-value: 8.6e-65
      DUF383   1 kildskslladlacmLLsNltkeesiaaqlleaklkvsqtpeess.........................ksvkalekLldlfvkga....tkdlnks. 69 
                 +il+ +++ladla+mLLsNl+  +s++++ll  +lkv   p+++s                         ++  al  L+d+fv+ a    +++l+k+ 
  CDO69660.1 107 YILNYQATLADLASMLLSNLSAASSVCTALL--SLKVPLLPDSKSptgwfpvdsrcgtcpapvpypseepMEALALPMLVDAFVRAApgveNQELDKRp 203
                 69999**************************..8999999988889************************9*************999887744555546 PP

      DUF383  70 ..anydylayvfanlsqlpegRelllepqesd.......kelplqkllpftehksiirRgGvastiKNccFekeahklLlseee..............v 145
                    ++++la+vfanls++p+gR+++l+p++sd        e+pl+kll+f ehk++irRgGvastiKNc+F+++ah++Ll++e+              +
  CDO69660.1 204 ykGDLHFLASVFANLSTTPAGRMFFLTPRSSDpfgedvdVEYPLSKLLAFAEHKDTIRRGGVASTIKNCAFHTPAHRALLASENekvtvppstvtapgM 302
                 76789***********************988899999999*****************************************777899999999****** PP

      DUF383 146 dllpylllpLagpeeldeedqekLpeelqllpedKeRepdsdirl 190
                 d+lpy+llpLagpee+d edqe Lp++lq+lp++K+Repd+ irl
  CDO69660.1 303 DILPYVLLPLAGPEEFDLEDQELLPPALQFLPPTKKREPDPVIRL 347
                 *******************************************95 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.65
      DUF383  39 q 39 
                 +
  CDO69660.1 379 H 379
                 1 PP

>> DUF384  Domain of unknown function (DUF384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   1.1   4.2e-25   2.5e-21       1      53 [.     352     404 ..     352     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 4.2e-25
      DUF384   1 sLllLcatrhgReyLRskgvYpilRelhkaekdeeveeaierlVqvLirdEse 53 
                 +LllLc+tr+gR+yLR +gvY+++R lh++e+ e+v+e++erlV++L rdE  
  CDO69660.1 352 TLLLLCTTRWGRDYLRTHGVYEVIRALHENEEVEKVSEHVERLVNLLKRDEGP 404
                 8**************************************************86 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012      0.69       5      24 ..      10      29 ..       7      31 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
                HHHHHT-SSHHHHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAakaL 24
                l + l+D++p+VR+ A+ +L
  CDO69660.1 10 LTQFLRDKNPQVRQIALANL 29
                67889************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3061.24
//
Query:       CDO69661.1  [L=1083]
Description: hypothetical protein BN946_scf184851.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-25   87.4   0.0    1.7e-24   86.3   0.0    1.7  1  RTC4      RTC4-like domain
  ------ inclusion threshold ------
        5.3    7.3  10.2          2    8.7   5.4    2.9  2  SPATIAL   SPATIAL


Domain annotation for each model (and alignments):
>> RTC4  RTC4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   1.9e-28   1.7e-24       4     120 ..     613     725 ..     610     726 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.9e-28
        RTC4   4 keSvyrdeakeavkksgkrklskeekrkldlekftpGYYGlkgqriiseeilkkfkkelrkravkdklvsargvsdFvqaVLvPEvavrLimeDmkvse 102
                 ke  +++e+ ++v+++g+r+      ++l+++k++pGYYG+ g +ii++++++ f  +    a+  +     +++dF+ +VLvPE+a+ LimeD+++s+
  CDO69661.1 613 KENEFWQEVVQNVRQQGSRQTAGVRGQFLHFNKTQPGYYGELGYMIIHQTLCDLFPPASFDPAAALP----LTPADFIAHVLVPEAALNLIMEDLNLSR 707
                 6678***************************************************555444343444....49************************** PP

        RTC4 103 eeAreileesaeyGelvn 120
                 e+A ++l++s+eyG++++
  CDO69661.1 708 EDALKTLRDSVEYGVAMF 725
                 ****************98 PP

>> SPATIAL  SPATIAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       0.5   4.5e+03     122     156 ..      48      83 ..       6      90 .. 0.55
   2 ?    8.7   5.4   0.00022         2      70     145 ..     197     277 ..     116     290 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.5
     SPATIAL 122 pssralsrrsssesrrskasnkektvqip.llqdqE 156
                 +ssra ++r +++++++ +s+k++ ++i+  l d E
  CDO69661.1  48 SSSRASQSRWNERTNSQASSSKRTVIEISdDLSDDE 83 
                 344555555444444444444544444431345555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00022
     SPATIAL  70 svseawreelkelaskvalv......sketekkkeekkeepevkrktqySaetGRlippssralsrrsssesrrskasnkek 145
                 +  e+++++l+e ++k   +      ++++++  ee+ e+ ++ r + y  +tGR+   ++ +  r  ss+++ +++  k++
  CDO69661.1 197 MRDEKTERSLRERSPKQVSTrpseshFQSSNDRDEEQGETDKTPRASTYRGTTGRISKWQTDSDLRTRSSQTNAKNK-EKNR 277
                 236777777888877777775543343333333335555558889999********988888877766665554433.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 7564.09
//
Query:       CDO69662.1  [L=513]
Description: hypothetical protein BN946_scf184851.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3755.90
//
Query:       CDO69663.1  [L=250]
Description: hypothetical protein BN946_scf184851.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-25   90.0   0.0    1.8e-25   89.8   0.0    1.0  1  DLH             Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.085   12.5   0.1        7.7    6.1   0.1    2.7  2  Abhydrolase_1   alpha/beta hydrolase fold
       0.13   11.3   0.0       0.18   10.9   0.0    1.1  1  Ferrochelatase  Ferrochelatase


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0     3e-29   1.8e-25       2     216 ..      27     247 ..      26     248 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 3e-29
         DLH   2 daylatpkna..kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddl.kaavaylksvpevs 96 
                 + y+atp     k +vv+ ++++fG+   n k  ++ +a++G+  ++Pdl+ ++a  p+d+ e+a+  ++ +  ++  +  + l +a v +l++ +   
  CDO69663.1  27 ESYVATPSGDypKDKVVLFLHDAFGLPlVNNKLLCDDFARNGFRTIMPDLFNGDA-VPEDAMERADFDRMAWMSRHGPETWQPLvDAVVSALRAEG--- 121
                 6899***9998899*************977779**********************.7999999888877777766655555555166666666666... PP

         DLH  97 tkkvgvvGfCmGGalalllaaevpevdaavafYG...lspekeleeaakikapilalfgeeDefipadevekleealkaan..vdlelkvYpgagHaFa 190
                 +  +g +G+C+G+  a++la ++ e + +v+ ++     pe   ++ +++kap+l+   e D+++++++  k +e l   +  + +e   ++g +H+Fa
  CDO69663.1 122 VTWIGTTGYCFGALPAWYLALKN-ESKVTVVSHPsmlRIPEDLEKYRDESKAPLLINSCETDPMFAQEAQAKADELLGSGQfaPGYERTYWEGCTHGFA 219
                 889********************.69********773334444556789*******************9999999887666224689999********* PP

         DLH 191 ndsre..syneeaaedawervlelfkqv 216
                  + +     +++ +e a+e+++++fk++
  CDO69663.1 220 VRGDMsnPKVKAGKEGAFEATVKFFKKY 247
                 *998866889999*************98 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0013       7.7      24      98 ..      63     148 ..      42     153 .. 0.59
   2 ?    3.2   0.0    0.0099        59     207     238 ..     167     198 ..     152     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0013
                    HHHHTTSEEEEEEETTSTTSSSTTTGB.CHH...........SHHHHHHHHHHH...HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGE CS
  Abhydrolase_1  24 aLakdgfdvillDlrGvgySspapacinddy...........gtasvaddldri...ldalgddkltlvGhSmGGmialayaaeyperV 98 
                    ++a++gf++i++Dl + +  +    ++  d+           +t+  +  +d++   l a g+  +   G+++G + a+++a+++ ++V
     CDO69663.1  63 DFARNGFRTIMPDLFNGDAVPEDAMER-ADFdrmawmsrhgpETW--QPLVDAVvsaLRAEGVTWIGTTGYCFGALPAWYLALKNESKV 148
                    566666666666666544332222222.33333344444433332..333444411144445555556689***********9999988 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0099
                    THHHHSEEEEEEETTCSSSCHHHHHHHHHCHT CS
  Abhydrolase_1 207 lknvlaptlvisgtsDplvppkaledlaqllp 238
                     ++ +ap l+ s ++Dp++  +a+ + ++ll 
     CDO69663.1 167 RDESKAPLLINSCETDPMFAQEAQAKADELLG 198
                    467788*****************999998865 PP

>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     3e-05      0.18     218     258 ..      88     124 ..      59     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3e-05
                     HHTTT-S-EEEEEE---SSS-BSSSBHHHHHHHHCCC.-S- CS
  Ferrochelatase 218 ealglkeevelayqSrvGpeeWlePdtddtleelaekgvka 258
                     e+++++   ++a++Sr Gpe+W +P +d ++++l+++gv+ 
      CDO69663.1  88 ERADFD---RMAWMSRHGPETW-QPLVDAVVSALRAEGVTW 124
                     444554...49***********.8**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1757.37
//
Query:       CDO69664.1  [L=141]
Description: hypothetical protein BN946_scf184851.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-21   74.9   0.2      1e-20   74.5   0.2    1.2  1  PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family


Domain annotation for each model (and alignments):
>> PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.2   5.9e-25     1e-20     126     181 .]       1      55 [.       1      55 [. 0.97

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 5.9e-25
   PTS_2-RNA 126 msrnhihlatglpgekevisgmrksaevliyidvekaladgikfyvsengviLteG 181
                 m+rnhihla+gl+g ++v+sgmr+s+++liy+dv+ka+++gikfy+s+ngv+LteG
  CDO69664.1   1 MTRNHIHLAQGLAG-SGVVSGMRNSSQILIYVDVQKAINAGIKFYISANGVVLTEG 55 
                 89**********96.68**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 998.30
//
Query:       CDO69665.1  [L=298]
Description: hypothetical protein BN946_scf184851.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-09   37.6   0.0    3.8e-09   36.8   0.0    1.4  1  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   2.1e-13   3.8e-09      20      78 ..     134     195 ..     114     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.1e-13
                    .EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSS....EEBE--EEEEEEEE CS
  Ribosomal_L23  20 kyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrk....vgrrksyKkaiVtL 78 
                    +++F+V+++++K++i++++ +++gV+ + ++t n++   +r gr     +   + yK+a+V L
     CDO69665.1 134 EATFRVPQSVTKTDIRSYLLAVYGVQTTYIRTDNYQSPLRR-GRGlpasTVPDRTYKRAVVGL 195
                    69***********************************9999.555577677788*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2181.62
//
Query:       CDO69666.1  [L=250]
Description: hypothetical protein BN946_scf184851.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-23   82.3   0.0    4.1e-23   82.1   0.0    1.0  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   2.3e-27   4.1e-23       2     216 ..      27     247 ..      26     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 2.3e-27
         DLH   2 daylatpkna..kkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskva.eekvlddlkaavaylksvpevs 96 
                 + y+a p     k +vv+ + ++fG+   n k  ++ +a++G+  ++Pdl++++   p+d+ ++++  +e +++++  e     ++a v ++++ +   
  CDO69666.1  27 ECYVAVPSGDyaKDKVVLFLSDVFGIPlINNKLLVDDFARNGFHTIMPDLFQGDP-YPEDALDRQDFDRESWRARHgPESWQPAVDAVVSAIRAEG--- 121
                 6799999988889***************66669**********************.8*********999999998524555666666666666666... PP

         DLH  97 tkkvgvvGfCmGGalalllaaevpevdaavafYG...lspekeleeaakikapilalfgeeDefipadevekleealkaanvd..lelkvYpgagHaFa 190
                    +g +G+C+G+  a++la +++  + +v+ ++     pe   e+ +k+kap+++   e D  +p+++  k +e + + + +  +e   ++g +H+Fa
  CDO69666.1 122 AAWIGTTGYCFGAGPAWYLALKGD-SNVTVITHPsrlRIPEDLEEYRDKAKAPLFINSCETDAAFPQEAQAKADEVFGDGKFApgYERTYWEGCKHGFA 219
                 789********************5.9********774445555567899****************************8776443389999********* PP

         DLH 191 ndsre..syneeaaedawervlelfkqv 216
                  + +     +++ +e a+e+++++fk++
  CDO69666.1 220 VRGDMsdPKVKAGKEGAFEATVKFFKKY 247
                 *998866899999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1721.19
//
Query:       CDO69667.1  [L=275]
Description: hypothetical protein BN946_scf184851.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-09   36.3  10.2    8.3e-09   35.4  10.2    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4  10.2   4.6e-13   8.3e-09       2      39 ..     191     230 ..     190     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.6e-13
                 S-HHHHHCT---STSSSS-HHHHHCT...HHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkln...leCtfysesskr 39 
                 aCd+Cr +K +Cd+ kPaC nC+k+    ++C  y++  kr
  CDO69667.1 191 ACDRCRVRKLRCDGAKPACYNCQKVAhtdVQCI-YDREPKR 230
                 9************************9999****.8888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1932.15
//
Query:       CDO69668.1  [L=367]
Description: hypothetical protein BN946_scf184851.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2437.18
//
Query:       CDO69669.1  [L=489]
Description: hypothetical protein BN946_scf184851.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-66  225.2   3.6    1.6e-66  224.9   3.6    1.1  1  Asp       Eukaryotic aspartyl protease
    1.8e-13   51.1   0.9      4e-06   27.2   0.0    2.6  2  TAXi_N    Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
      0.024   14.4   0.0       0.35   10.6   0.0    2.2  1  TAXi_C    Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9   3.6   2.7e-70   1.6e-66       2     314 ..      90     417 ..      89     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 224.9 bits;  conditional E-value: 2.7e-70
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgst 100
                 ++g+i +Gtp  +f+vi+DTGSsdlW  +s+   s++++   t+dps+Sst+ + ++s+sisYG+g+++G+l++d v+++g +v  q fg +t+ ++ +
  CDO69669.1  90 FYGSIAVGTPAISFNVILDTGSSDLWLAASDGV-STESDGIPTFDPSSSSTFTDLNTSFSISYGSGAARGTLGKDAVQFAGFQVDSQVFGVVTQVSQ-N 186
                 799**************************9986.99***********************************************************99.6 PP

                 HTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTT.SSSSSEEEEEE-S........TTSSEEEEEESSEEGGGEEEEEEEEEESS..TSSTEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
         Asp 101 flaakfdGiLGlgfkeisveeatpvfdnlvsqg.likepvfsvylnr........eeeeggeivfGgvDeskykGsltyvpvts..kgywqielesvtv 188
                 +l+++++G++Glgf++i++++atp+++ lv++g  +++p+ ++ l r          e gg+  +G+v++s ++G++ y ++    +gyw  el ++tv
  CDO69669.1 187 LLNSPVSGLMGLGFQTIAASGATPFWQALVENGkTLDSPLMAFQLTRfndvnnaqALEPGGTFNLGAVNTSLFTGDIDYQDIPDgqEGYWIQELAGLTV 285
                 999*************************99775279*********988777544333569**********************98889************ PP

                 TTEEEEEEEEEEEE..EETTCSSEEEEHHHHHHHHHHHTTEEEET...TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE.. CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
         Asp 189 ggktvlcssgcqai..lDtGTsllalptsivekiakaigakkses...egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl.. 280
                 +g++v   sg++a   +DtGT+l+ +p+++++++ +ai +++  +   +g+++  C++   + ++++ +g+ +i+ pvs+  ++ e+ ++++C+ ++  
  CDO69669.1 286 NGNSVQVGSGSAAYaaIDTGTTLVGGPQDVISALYDAIPGSQALTgqnSGYWAYPCNT---DVNVTLRFGSSSISWPVSKEDFQLEQASQETCVGAFfa 381
                 *****655555554449*********************88776443337999*****6...899999999999888888888888888889******99 PP

                 ..EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 281 ..vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                   +s  + ++wi+Gd+Fl+++y+vf      vg+A+
  CDO69669.1 382 lnTSGTSAPAWIVGDTFLKNVYSVFRASPASVGFAK 417
                 88888899***************************8 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.7e-10     4e-06       2      55 ..      91     144 ..      90     148 .. 0.93
   2 !   21.9   0.5   2.7e-08   0.00016      81     143 ..     147     203 ..     144     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.7e-10
      TAXi_N   2 lvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavp 55 
                 + si +Gtp+ ++++++DtGs+ +W+  +   ++ s   p+fdps+sst++ ++
  CDO69669.1  91 YGSIAVGTPAISFNVILDTGSSDLWLAASDGVSTESDGIPTFDPSSSSTFTDLN 144
                 6789************************99999*****************9875 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.7e-08
      TAXi_N  81 yeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgk.snlgglaagadGilGLGrgkl 143
                 ++isyg  g  ++G+l++d++++      + +v++ vfG ++  +++ l++ ++G++GLG++ +
  CDO69669.1 147 FSISYG-SG-AARGTLGKDAVQF-----AGFQVDSQVFGVVTqVSQNLLNSPVSGLMGLGFQTI 203
                 688996.55.9************.....899*********995666667778********9887 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.9e-05      0.35      94     160 ..     346     416 ..     274     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.9e-05
                 -EEEEESSS-.EEEE-GGGGEEE-SSSEEEE-EEE-...-S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  94 titlvlegga.ewtisgenllvkveggvvClafves...gvagesavviGglqlednllvFDleksrlgFs 160
                 ++tl++ +++ +w +s+e++ +++  + +C++       +  +++a ++G   l++++ vF  +   +gF+
  CDO69669.1 346 NVTLRFGSSSiSWPVSKEDFQLEQASQETCVGAFFAlntSGTSAPAWIVGDTFLKNVYSVFRASPASVGFA 416
                 589****9888********************97666676888999****************9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3496.91
//
Query:       CDO69670.1  [L=424]
Description: hypothetical protein BN946_scf184851.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-22   80.5   0.0    7.8e-12   45.1   0.0    2.2  2  Pkinase      Protein kinase domain
      1e-06   28.3   0.0       0.03   13.6   0.0    2.9  3  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.065   12.6   0.0       0.14   11.5   0.0    1.5  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   5.3e-12   3.2e-08       1     129 [.      54     183 ..      54     186 .. 0.87
   2 !   45.1   0.0   1.3e-15   7.8e-12     134     264 .]     245     413 ..     240     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 5.3e-12
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee....kdelylvleyveggeladllerkgs 94 
                 y+ l+klG Gs++++  a++++++  vA+K+   e+ + +++  ++lr ++  ++  + +i++l + f+       + +l +e+v    l ++l+    
  CDO69670.1  54 YRILHKLGYGSYATIWLARDQASNAFVALKVTTAESSRAEMReARMLRQLAGAAEGPSTHILTLCDQFSVqgpnGLHHILATEVVV--PLLTVLRP--E 148
                 67899**************************99988887766477777777777777*********99987755567778899888..78999984..6 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                  s++  k+ a+ +++g++++H+ gi H Dl   N+
  CDO69670.1 149 TSPRWRKSAARALASGVAHMHASGIKHGDLHLGNL 183
                 899999************************98886 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 1.3e-15
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.......TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl.......keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetk 224
                 + +++i DFG a+ ++     +++ + +e +APEv        ++++  ++++D+W+lG  +ye+++g+ +f+   g    e  ld+   ++ + g + 
  CDO69670.1 245 DPDIRILDFGNARFADDPA--SDIQCAEEACAPEVAfarvalhESKPAwGPPSDIWALGAAIYEIVSGSSLFY---GVGIGEGLLDR---MVALTGSVP 335
                 6679***********9965..999999999*****99999999666667************************...55555556666...555555444 PP

                 ...HHHTTS......................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 225 eklpeasei......................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 + +++  +                                        + +  ll+++l  +p+kR+t++e++q+p++
  CDO69670.1 336 VRWQTFWQSrharrdighssdssheavdrewarrrdrlrekcaddadVDRLVALLRRILVLEPEKRPTIDEVVQDPWF 413
                 4444433334566778999999***********************99999***************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.9e-06      0.03       3     133 ..      56     182 ..      54     184 .. 0.77
   2 !   10.4   0.0   4.8e-05      0.28     139     204 ..     245     312 ..     236     327 .. 0.71
   3 ?    0.1   0.0     0.066   3.9e+02     231     257 ..     383     409 ..     356     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-06
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                  + +klG G++++++ ++ +     ++  Va+K+ ++e+++ e  ++++l++++   +    +i+ l    + ++p    +++ te      Ll+ Lr 
   CDO69670.1  56 ILHKLGYGSYATIWLARDQ----ASNAFVALKVTTAESSRAEmrEARMLRQLAGAAEGPSTHILTLCDQFSVQGPnglhHILATEV--VVPLLTVLRP 147
                  5789***********9988....88999****996655555422445666666666667889*99999999666645334555554..4679999998 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGG CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarN 133
                  +    ++ ++  s a  +A+G++++++  + H dl   N
   CDO69670.1 148 E----TSPRWRKSAARALASGVAHMHASGIKHGDLHLGN 182
                  7....888899999********************98766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.8e-05
                  TTEEEE-STTTHEET.TTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSG CS
  Pkinase_Tyr 139 nkvvkisDfGLardi.ekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlges 204
                  +  ++i DfG ar      ++ + +eea  p    a  +l+e+k      sD+W+ G  ++Ei++ g+s
   CDO69670.1 245 DPDIRILDFGNARFAdDPASDIQCAEEACAPEVAFARVALHESKpaWGPPSDIWALGAAIYEIVS-GSS 312
                  56789999999998822233335555555555555555666555777889**************9.544 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.066
                  BHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfselve 257
                   ++l  l+++ +  +pe+Rpt+ e+v+
   CDO69670.1 383 VDRLVALLRRILVLEPEKRPTIDEVVQ 409
                  4678889999999**********9986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05      0.14     115     148 ..     149     182 ..     123     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyakn 148
                  + + ++   +a++  +a +h+ g++H+dl   n
  CDO69670.1 149 TSPRWRKSAARALASGVAHMHASGIKHGDLHLGN 182
                 5678899999********************8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3216.39
//
Query:       CDO69671.1  [L=190]
Description: hypothetical protein BN946_scf184851.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1352.78
//
Query:       CDO69672.1  [L=385]
Description: hypothetical protein BN946_scf184851.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-28   98.8   0.0      4e-28   98.3   0.0    1.1  1  Methyltransf_16  Lysine methyltransferase
     0.0018   18.2   0.0     0.0029   17.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.044   14.5   0.0       0.13   13.0   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
       0.14   12.9   0.0       0.28   12.0   0.0    1.5  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0     9e-32     4e-28       6     172 ..     159     354 ..     155     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 9e-32
  Methyltransf_16   6 eLkieedtgesigrkvWdaavvlvkylekklake..............lganelsklsvlELGsGtGlvGlavael......lpeakviltDle 79 
                       L+++e+t+ +  +k+Wd+++ l+ +l + ++ e              +   +++ ++v+ELG+GtG+v l++ +l       ++  ++ tDle
       CDO69672.1 159 FLTVREQTSFDLDKKIWDSGIGLSSWLVQLAQ-EptqtaehagvararDALFSSQARKVIELGAGTGIVSLTLGALrsttsrGSDGCILTTDLE 251
                      5899*************************765.45999******998866678999*****************99988887447888999**** PP

  Methyltransf_16  80 ellellkknielnknalkskv...kvevLdWg.eeleedlle.keevDlilaaDcvYledslelLvkvLkellkkesk.....vlvaykkrrea 163
                       +++ll++n+ +nk+a +s+    +  vLdW+ eel+e++ +  + +D i++aD++Y+  s++ Lv++L+ l++ +       +++ yk+r  +
       CDO69672.1 252 SAMPLLEHNVSANKSAFSSSTtqpQPLVLDWDiEELPEEVNAvDSGFDAIVMADVTYNTASFPSLVRTLSSLIRLSAPsktpvIILGYKERDTT 345
                      **************966555411145689**8678988875424569*********************999876443223466**********9 PP

  Methyltransf_16 164 ekkFfklle 172
                      e++  +l++
       CDO69672.1 346 ERTLWDLMK 354
                      998877776 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.5e-07    0.0029      10     109 ..     202     324 ..     189     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.5e-07
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqg............... 81 
                      +++++ l+    +  +v+++G+GtGi++  l + + ++  g D + ++   +e      +   + ++++++++ ++pq                
       CDO69672.1 202 ARARDALF--SSQARKVIELGAGTGIVSLTLgALRSTTSRGSDGC-ILTTDLEsampllEHNVSANKSAFSSSTTQPQPlvldwdieelpeevn 292
                      56777777..67888************999954444455566664.333333346666644444444444555667666777888888888899 PP

  Methyltransf_23  82 ....kfdlIvlrevlehvpdppellrqiatll 109
                           fd Iv+ +v+++  ++p+l+r++ +l+
       CDO69672.1 293 avdsGFDAIVMADVTYNTASFPSLVRTLSSLI 324
                      9999****************999999998875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.8e-05      0.13       1      93 [.     216     327 ..     216     330 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
                      EEEET-TTSHHHHHHHCTS.....T.SSEEEEEESSHHHH......HHHHHHHHH..TTTTEEEEESBCCGBS....SSTTTEEEEEEEST.GG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.....g.kakvtgvDiseeml......eaareraee..eglnvefvqgdaedlp....fedgsfDlvvssga.lh 75 
                      v++lG+GtG ++l l +       g ++ ++ +D+ ++m        a ++ +++   +++  ++  d+e+lp      d+ fD++v++ + ++
       CDO69672.1 216 VIELGAGTGIVSLTLGALRsttsrGsDGCILTTDLESAMPllehnvSANKSAFSSstTQPQPLVLDWDIEELPeevnAVDSGFDAIVMADVtYN 309
                      789******999887766333555469999******999644433222223333333333666678889999944434788*******888666 PP

                      GSSHHHHHHHHHHHHHHE CS
  Methyltransf_25  76 hlsdedlekalkeiarvL 93 
                        s + l ++l+ + r+ 
       CDO69672.1 310 TASFPSLVRTLSSLIRLS 327
                      677788888888887765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.1e-05      0.28       2      92 ..     218     323 ..     217     329 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.1e-05
  Methyltransf_12   2 eiGcGtGsllrallekl......pdieytgvDispsai....edakeklakrennnnnnvelealdlldldgg.....ssfDlvvasnvlhhlk 80 
                      e+G+GtG ++  l +        +d  ++ +D+ +++     +  ++k a+ +     +  + + d+++l+++     s fD++v+++v  +++
       CDO69672.1 218 ELGAGTGIVSLTLGALRsttsrgSDGCILTTDLESAMPllehNVSANKSAFSSSTTQPQPLVLDWDIEELPEEvnavdSGFDAIVMADVTYNTA 311
                      99**********9999999***99999******9999966655555555555555555666666666666666****************99996 PP

  Methyltransf_12  81 direvldnirkl 92 
                         ++++ + +l
       CDO69672.1 312 SFPSLVRTLSSL 323
                      666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2733.35
//
Query:       CDO69673.1  [L=458]
Description: hypothetical protein BN946_scf184851.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-18   65.9  16.0      3e-17   63.0  13.0    2.9  2  Rhomboid  Rhomboid family


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.31   5.5e+03      95     121 ..     141     167 ..     136     186 .. 0.78
   2 !   63.0  13.0   1.7e-21     3e-17       5     146 ..     209     425 ..     206     429 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.31
                 CGS----HC...CCCCCCCCCCHHHCT CS
    Rhomboid  95 kllrkliiallllllfillnlvlgllp 121
                  ++++++  l +++++ +++++  +l+
  CDO69673.1 141 SSMEQFPETLKAMVIWSYVQVFQPILN 167
                 567788888888999999988876665 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 1.7e-21
                 C-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHH..................HHHHHHHHHHHHHHHHHHHHHHHH-S.................. CS
    Rhomboid   5 gelwrlltsmflHagwlHllfNmlallvfGsplerrl..................Gslrflllyllsglagsllsllfsaeses............... 70 
                 g+ ++l+tsmf+H +++Hl+fN+lal +fG+ + ++l                   ++ +l+l++++gl+++l+s+++ a+ ++               
  CDO69673.1 209 GKSYTLFTSMFSHENIFHLGFNCLALASFGAAASQQLmiryrkveeergilseptPKWHLLALFISAGLFSGLVSHVAYARWRYprviaqlrsagtsss 307
                 67799*************************************************99*************************988*************** PP

                 .......................................-EESSHHHHHHHHHHHHHHHHCCCCGS----HC.......CCCCCCCCCCHHHCTSSSTT CS
    Rhomboid  71 .......................................plvGaSGaifgllgallvlvprnrkllrkliia....llllllfillnlvlgllpraggv 126
                                                         ++G SGai++l++++++ +p + +++  ++ +     + ++++++++l+ +l +++  +
  CDO69673.1 308 tlragssaasssapsasgaasstaktavshvvreakegtGSLGSSGAIYALFAITALGFPDAEITFVIPPWIpvniQTGFGALVAIDLLGALRGWR-MF 405
                 ****************************************************************999888887777777899*************8.** PP

                 THHHHHHHHHHHHHHHHHHC CS
    Rhomboid 127 snlAHlgGllaGlllgllll 146
                 +++AHlgG+l+G+++ ++  
  CDO69673.1 406 DHFAHLGGALFGVFWYYCGA 425
                 **************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3350.14
//
Query:       CDO69674.1  [L=176]
Description: hypothetical protein BN946_scf184851.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-15   56.8   0.0    3.6e-15   56.1   0.0    1.4  1  SHS2_Rpb7-N    SHS2 domain found in N terminus of Rpb7p/Rpc25
    1.9e-11   44.1   0.1    3.4e-11   43.3   0.1    1.4  1  S1             S1 RNA binding domain
  ------ inclusion threshold ------
      0.088   13.0   0.0       0.14   12.4   0.0    1.4  1  RNA_pol_Rbc25  RNA polymerase III subunit Rpc25


Domain annotation for each model (and alignments):
>> SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   6.1e-19   3.6e-15       2      70 .]      15      83 ..      14      83 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 6.1e-19
                 EEEEE-GGGTTSTHHHHHHHHHHHHHTTBEETTTEEEEEEEEEEEECCEEE-TTTSSEEEEEEEEEEEE CS
  SHS2_Rpb7-N  2 dtvrlePsylgstledallerllekyegkvvpslGvivavldiaeysegkvlggsGsvyvrVtfralvF 70
                 +t+ l+Psy+g+ +++ l+ +l +++eg+++ ++G+i+av  i+++++g vl+gsG + +  ++ra+vF
   CDO69674.1 15 HTILLHPSYFGPRMLNFLESKLYSDVEGTCSGEFGYIIAVVSILDIGKGMVLPGSGQAEFVTRYRAIVF 83
                 6899****************************************************************9 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   5.7e-15   3.4e-11       1      70 [.      84     161 ..      84     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 5.7e-15
                 HSTTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS.........CEESCHHHCEETTEEEEEEEEEEETTTTEE CS
          S1   1 kpekgevveGeVtsvtkgGafVelgngvegfvpaselsrd.........arvedpdevlkvGdevkvkvlkvdkdrrri 70 
                 kp+kg+vv+G+V +vtk+G+  ++g + ++fv++ +++ d         ++  ++d+ + ++ +v++k+ ++++d+ +i
  CDO69674.1  84 KPFKGQVVDGVVNNVTKMGFLADVG-PLTVFVSRQLIHPDmkfdpssnpPSFASEDQIIEKNTRVRLKIVGTRVDATEI 161
                 79***********************.**********************988889999******************9977 PP

>> RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05      0.14       1      76 [.      85     156 ..      85     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                    -STTSEEEEEEEEEETTCEEEEBTTBSEEEEECCCCSTTEEEECCCTCEEEEESSSEEEEE-TTSEEEEEEEEEEE CS
  RNA_pol_Rbc25   1 PfvgevltgkiksstregikvslgffddifvpkelLfepsefdeeeqawvweveeeeelyldvgeeirfrveeeif 76 
                    Pf+g+v+ g +++ t+ g   ++g + ++fv  +l+   ++fd++++   +     e+  ++++ ++r++++  ++
     CDO69674.1  85 PFKGQVVDGVVNNVTKMGFLADVGPL-TVFVSRQLIHPDMKFDPSSNPPSFAS---EDQIIEKNTRVRLKIVGTRV 156
                    9**********************977.69*****************9877766...77899********9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1288.79
//
Query:       CDO69675.1  [L=257]
Description: hypothetical protein BN946_scf184851.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-59  199.8   0.1    5.9e-59  199.5   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.2e-47  161.1   0.6    2.6e-47  160.8   0.6    1.1  1  adh_short        short chain dehydrogenase
    2.5e-12   47.1   0.4    4.4e-12   46.3   0.4    1.4  1  KR               KR domain
    0.00015   21.4   0.2    0.00031   20.3   0.2    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
    0.00025   20.5   0.0    0.00037   20.0   0.0    1.2  1  DUF1776          Fungal family of unknown function (DUF1776)
     0.0033   17.6   0.0       0.45   10.7   0.0    2.2  2  Flavodoxin_1     Flavodoxin
     0.0056   15.9   0.3     0.0067   15.6   0.3    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0063   16.6   0.1     0.0093   16.1   0.1    1.3  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
  ------ inclusion threshold ------
      0.053   12.8   1.3      0.081   12.2   0.9    1.4  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
      0.073   12.4   0.2       0.22   10.8   0.2    1.8  1  HEM4             Uroporphyrinogen-III synthase HemD
      0.077   13.0   0.1        2.8    8.0   0.1    2.5  2  ADH_zinc_N       Zinc-binding dehydrogenase
       0.11   11.9   0.1       0.16   11.3   0.1    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.15   12.3   0.4         22    5.3   0.0    2.9  3  Flavodoxin_5     Flavodoxin domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.1   4.3e-62   5.9e-59       1     231 [.      14     247 ..      14     249 .. 0.91

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 4.3e-62
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT.SE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg.ae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   G  ++IG+aiAk+la+ Ga+vv+ +++ ++ +++v++  ++ g  + + +++DV + ++ ++lvee+ ++fg++Dilv nag++++  + + ++++e
    CDO69675.1  14 GSSRSIGAAIAKRLASLGANVVINYISSASaAQAVADEINNQGvGKaIiIKADVGSLQENRHLVEETLRQFGRIDILVLNAGVMEN--NVLQDVTEE 108
                   5679*************************97444444444333333336*************************************..9999***** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEE..EEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeggsivnl..ssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel 188
                   +fd+ +++n+++ + l++ + p++ +gg+++    s ++a+ v pny +y+ +K+a+e+++r lA++lg++gi+vN+vspgp++T++ ++ k +++ 
    CDO69675.1 109 NFDKHFNTNVKGPLFLVQTVSPHLSSGGRVIFFstSLTRASTVPPNYLIYASTKGAVEQFSRVLAKDLGARGITVNTVSPGPTDTDLFRQGK-TEQQ 204
                   ******************************9873256699999********************************************99887.7889 PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEEST CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDg 231
                   ++ ++  +p +rlgt+eev +++ fL+s++as+++Gqt+ ++g
    CDO69675.1 205 INFFKGLHPQKRLGTAEEVSNVVSFLVSEDASWVNGQTILING 247
                   9**************************************9987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.6   1.9e-50   2.6e-47       1     191 [.       8     200 ..       8     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 1.9e-50
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 kv++vtG s+ IG aiak+la+ Ga+vv+ + +s++++++va+e++++   ka++i++Dv + +e + lve+   ++g++d+Lv NAG+ +++  ++++
  CDO69675.1   8 KVAIVTGSSRSIGAAIAKRLASLGANVVInYISSASAAQAVADEINNQgVGKAIIIKADVGSLQENRHLVEETLRQFGRIDILVLNAGVMENNVLQDVT 106
                 89***************************999999999**********9899*********************************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 ee++++ +++N++g++ l+++v p++   s+Gr+++ s   +      +++  Y+++K+av++++r lak+l  +gi+vn+v PG++dTd+ ++ +
  CDO69675.1 107 EENFDKHFNTNVKGPLFLVQTVSPHLS--SGGRVIFFSTSLTraSTVPPNYLIYASTKGAVEQFSRVLAKDLGARGITVNTVSPGPTDTDLFRQGK 200
                 *************************77..9*****998877622455689****************************************987755 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.4   3.2e-15   4.4e-12       4     135 ..      11     142 ..       9     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.2e-15
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-.EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealga.evevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tG   ++G ++a+ la+ ga+ ++    s    ++++a  +e++++g+ +  +++aDv + ++ ++l+ee  +++++i   +  Agv++++ l+++t
  CDO69675.1  11 IVTGSSRSIGAAIAKRLASLGANVVINYISS---ASAAQAVADEINNQGVgKAIIIKADVGSLQENRHLVEETLRQFGRIDILVLNAGVMENNVLQDVT 106
                 89*******************9998877666...356677899******988999******************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEE CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfS 135
                 +e++++ ++  vkG   L +++++  +s   +++fS
  CDO69675.1 107 EENFDKHFNTNVKGPLFLVQTVSPhlSSGGRVIFFS 142
                 ****************99998877554444444444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   2.3e-07   0.00031       2     191 ..      11     206 ..      10     236 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-07
                 EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S..---H..HHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl........elveldltdrs....alerlfkee.qpdavihlAa..vggv..aasse 82 
                 +VtG +  iG+a++k+l++ g + vi+  +   + ++a  +++         ++++d+   +     +e+ ++++ ++d+ ++ A+  + +v  +++ e
  CDO69675.1  11 IVTGSSRSIGAAIAKRLASLGANvVINYISS-ASAAQAVADEInnqgvgkaIIIKADVGSLQenrhLVEETLRQFgRIDILVLNAGvmENNVlqDVTEE 108
                 8********************9956665555.44444555555799*****777777765443334788888888899998888774555552234455 PP

                 SHHHHHHHHTHHHHHHHHHHHHHTCT..EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-T CS
   Epimerase  83 dpadfieknlqgtlnlleaarkagvk..rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprnge 179
                 +  + +++n++g l l++ ++ +     r++f+s+s +     +            +    Ya +K a+e+  + +a++ g + i+++  +  Gp + +
  CDO69675.1 109 NFDKHFNTNVKGPLFLVQTVSPHLSSggRVIFFSTSLTRASTVP------------PNYLIYASTKGAVEQFSRVLAKDLGARGITVNTVSP-GPTDTD 194
                 5568899**************8833344*******765443333............223357777777777777777777766666654433.444666 PP

                 TSTTSHHHHHHH CS
   Epimerase 180 gevsrvipalir 191
                  +++++  + i+
  CDO69675.1 195 LFRQGKTEQQIN 206
                 666666655555 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.7e-07   0.00037     109     196 ..     103     187 ..      96     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.7e-07
     DUF1776 109 etiplsswaselnerllspiltlqallplltsrakqkakiivvnpsiss.slnlpfhapEalvssalsalfevLkrelrphnidvtqik 196
                 + ++++++ + +n+++  p+ ++q   p+l s      ++i++++s++  s  +p++ + a + +a++++ +vL+++l+  +i v ++ 
  CDO69675.1 103 QDVTEENFDKHFNTNVKGPLFLVQTVSPHLSS----GGRVIFFSTSLTRaSTVPPNYLIYASTKGAVEQFSRVLAKDLGARGITVNTVS 187
                 67899**************************7....78*********9625678999**************************998876 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.02        28       7      66 ..      13      75 ..      12     112 .. 0.86
   2 !   10.7   0.0   0.00033      0.45       1      39 [.     156     194 ..     156     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.02
                  SSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSC...GGGGGTHSEEEEEEEEETTTBEEGGGH CS
  Flavodoxin_1  7 tGnteklAkqlaeelgehgfnadvvslsdydes...lseieeealllvvtsTfgnGdppenge 66
                  tG+++++  ++a+ l + g n+ +  +s ++ +   ++ei+++ +   +++ + +G+++en +
    CDO69675.1 13 TGSSRSIGAAIAKRLASLGANVVINYISSASAAqavADEINNQGVGKAIIIKADVGSLQENRH 75
                  899999999999999999999999999999988889999999999999999999999999976 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00033
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydes 39 
                   ++Y+S+ G  e++ + la++lg++g++++ vs    d +
    CDO69675.1 156 LIYASTKGAVEQFSRVLAKDLGARGITVNTVSPGPTDTD 194
                   69************************9999988777754 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   4.9e-06    0.0067       2     116 ..      11     129 ..      10     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.9e-06
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHH.HHHHTT...T-SEEEE------..H. CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdker.lekaleel.kvdvvfhaAAlKh..V. 90 
                      +vtG++ siG ++ +++++  ++ +i + ++  + +++++e++++   k +   i + +g+++++++ +e++l+++ ++d+++  A + +  V 
       CDO69675.1  11 IVTGSSRSIGAAIAKRLASLGANVVINYISSASAAQAVADEINNQGVGKAI--IIKADVGSLQENRHlVEETLRQFgRIDILVLNAGVMEnnVl 102
                      69************************9999999999*****8888887777..55699***997665168899998457876655554331234 PP

                      .HHHHHSHHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  91 .PlveenpleaiktNvlgtenvieaai 116
                        + een  + ++tNv g   ++++  
       CDO69675.1 103 qDVTEENFDKHFNTNVKGPLFLVQTVS 129
                      46789999999******9998888765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   6.7e-06    0.0093      21     116 ..       5     101 ..       3     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.7e-06
                    -TTSEEEEE--S.HHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCT.TT-SEEEE-SSSSSSB-HHHHCCS-TTEEEEE-SSTTT CS
  AdoHcyase_NAD  21 laGkvavvaGyG.dvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevv.kkadivvtttGnkdiitlehlkkmkddaivcniGhfds 114
                    l+Gkva+v+G    +G   a+ l +lGa v++  +   +a qa+ +  + + + +++  kad+  +   n+ +++    +  + d +v n G +++
     CDO69675.1   5 LTGKVAIVTGSSrSIGAAIAKRLASLGANVVINYISSASAAQAVADEINNQGVGKAIiIKADV-GSLQENRHLVEETLRQFGRIDILVLNAGVMEN 99 
                    68********86379*******************************99988887655144443.45556666665443333455666666666666 PP

                    TB CS
  AdoHcyase_NAD 115 ei 116
                    ++
     CDO69675.1 100 NV 101
                    65 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   5.9e-05     0.081      33      96 ..       4      66 ..       1      78 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GG CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikae 96
                   +l+gk ++v G s+ +g ++a  L++ +a V +   ++ + a+ +   +i   +vGk+ +ika+
     CDO69675.1  4 SLTGKVAIVTGSSRSIGAAIAKRLASLGANVVINYISSASAAQAV-ADEINNQGVGKAIIIKAD 66
                   689****************************99988887766665.457888999999999987 PP

>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00016      0.22      78     230 ..      18     195 ..      15     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                 ESSHHHHHHHHHTT---SE.E-..SSSHHHHGGGS-.---EEEEEE-SS.S-.....-HHHHHHHHHTT...EEEEEE-SEEE.EE-HHHHHHHHHHHH CS
        HEM4  78 avGpaTaraLeelglrvdl.vpseegtaegLaeelaeslagkrvlllrgeia.....rddlaegLeerg...aevdevevYet.vpaeeepeelkealk 166
                 ++G a a+ L +lg +v++ + s++  a+++a+e++++   ++ ++++++ +     r  ++e+L++ g   + v  + v e+ v ++ ++e++ ++++
  CDO69675.1  18 SIGAAIAKRLASLGANVVInYISSASAAQAVADEINNQGV-GKAIIIKADVGslqenRHLVEETLRQFGridILVLNAGVMENnVLQDVTEENFDKHFN 115
                 69***************9997777***********94444.6777777776666665667778887444333666666666664444455555555553 PP

                 TT--.................SEEEESSHHHHHHHHHH-S-HHHHHCTSEEEE..ESHHHHHHHHHTT---SEEETS--HHHH CS
        HEM4 167 agev.................davvftSpstvrnllellkdegdelkevkvaa..iGptTaealkklglkvdvvaeeptaegl 230
                 ++ v                   v+f+S+s +r+  + ++ +     ++k a+  ++++ a+ l   g++v  v++ pt  +l
  CDO69675.1 116 TN-VkgplflvqtvsphlssgGRVIFFSTSLTRA--STVPPNYLIYASTKGAVeqFSRVLAKDLGARGITVNTVSPGPTDTDL 195
                 32.2355567777777777777777777777775..33444443333333333337777777777777777777777777666 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1     0.002       2.8      27      60 ..      24      58 ..       5      70 .. 0.73
   2 ?    2.1   0.0      0.13   1.8e+02      52     106 ..     104     160 ..      78     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
                HHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEE CS
  ADH_zinc_N 27 lelakklGadevinykea.dlverikeltggegvd 60
                ++ +++lGa++viny +  +  +++++  + +gv 
  CDO69675.1 24 AKRLASLGANVVINYISSaSAAQAVADEINNQGVG 58
                3457788********55558899998888887875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
                 HHTTTSSEEEEEESSCSHHHH..HHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT CS
  ADH_zinc_N  52 eltggegvdvvfecvGsgatl..eaalkllkpgGrlvvvGg.gkgeeefdlrnlllke 106
                 + t +e++d  f++   g  +  ++    l  gGr+ ++ + ++  +++++++l++ +
  CDO69675.1 104 DVT-EENFDKHFNTNVKGPLFlvQTVSPHLSSGGRVIFFSTsLTRASTVPPNYLIYAS 160
                 555.4455555555554444322666778999********987777779999999765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00012      0.16      33     110 ..       4      78 ..       1     109 [. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                   -GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBS CS
  2-Hacid_dh_C  33 elsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlin 110
                   +l+gk   + G  r IG a+akrl+++g++v++   s  + +++ +     +  ++ + ++ i+   +   +e+rhl++
    CDO69675.1   4 SLTGKVAIVTGSSRsIGAAIAKRLASLGANVVINYISSASAAQAVA----DEINNQGVGKAIIIKADVGSLQENRHLVE 78 
                   677888888888755***************9998777553332222....22334556666666666666677777765 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.043        59       8      38 ..      13      43 ..      10      56 .. 0.80
   2 ?   -2.1   0.0       2.9     4e+03      77      88 ..     137     148 ..     124     151 .. 0.77
   3 ?    5.3   0.0     0.016        22       2      32 ..     156     186 ..     155     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.043
  Flavodoxin_5  8 dGqTkkiaeriaeelreegelvdvedvekes 38
                  +G+++ i  +ia++l++ g+ v ++ ++ +s
    CDO69675.1 13 TGSSRSIGAAIAKRLASLGANVVINYISSAS 43
                  7*****************9999988875333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
  Flavodoxin_5  77 pvalfsvsltar 88 
                   +v++fs+slt+ 
    CDO69675.1 137 RVIFFSTSLTRA 148
                   799999999964 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.016
  Flavodoxin_5   2 ilYsSrdGqTkkiaeriaeelreegelvdve 32 
                   ++Y+S++G+ ++  + +a+ l+++g +v+  
    CDO69675.1 156 LIYASTKGAVEQFSRVLAKDLGARGITVNTV 186
                   69********************997776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1796.03
//
Query:       CDO69676.1  [L=1449]
Description: hypothetical protein BN946_scf184851.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-292  969.9   0.0   3.8e-149  497.3   0.0    2.3  2  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
      3e-95  317.3  13.0    7.1e-49  166.4   3.9    2.4  2  Sortilin_C      Sortilin, neurotensin receptor 3, C-terminal
    1.8e-10   39.2  39.0          1    9.7   0.4   12.2 11  BNR             BNR/Asp-box repeat
    2.6e-05   23.6   2.5       0.42    9.9   0.0    5.7  7  BNR_2           BNR repeat-like domain
    8.8e-05   22.4   1.7       0.23   11.4   0.0    6.0  8  CHB_HEX_C       Chitobiase/beta-hexosaminidase C-terminal dom
     0.0094   15.2   0.6        7.1    5.8   0.0    3.9  3  PSII_BNR        Photosynthesis system II assembly factor YCF4
  ------ inclusion threshold ------
      0.018   15.1   0.6         23    5.0   0.0    5.3  7  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  470.3   0.2  2.3e-144  5.8e-141       2     432 ..      57     511 ..      56     529 .. 0.92
   2 !  497.3   0.0  1.5e-152  3.8e-149       2     446 .]     716    1165 ..     715    1165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 470.3 bits;  conditional E-value: 2.3e-144
                     EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESS..ETTEEEEE........ CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhak..dkdwlialgek....k 90 
                     +v++SeDeGktw+    +++g+a + ++ hpfd+k a++l++s+++++t DrGktw++f++p +p+l a+plsfh++  ++ +++++g+      
      CDO69676.1  57 NVHVSEDEGKTWQLAPGVQEGRASM-VIEHPFDNKIAFILSRSTTHWRTIDRGKTWQSFEMPLPPALVARPLSFHSDpsKWGYILYQGTVcsgsG 150
                     799*************999999886.*************************************************97225556777777677766 PP

                     ...BTTS-EEEESSTTSS.EEEEESSEEEEEE-S..........TT-EEEEE-SSS-TTT..TTTSEEEEEESSTTSS-EEEE........EEEE CS
  Sortilin-Vps10  91 eskdckkkayystdggks.wkklqesvkkcewakss.....kkkeekilceekeeesese..ekkklrlvssddffkskkelk.......segvv 170
                      +  c++++yy++d ++s   +l +++++c++a+ss     +++++ i+c++ +  ++++  +  ++rl+ss+dff+++++++       ++g+v
      CDO69676.1 151 WGAICHDETYYTKDAFSSdSPLLLTDTSRCQFAHSSkdfkhEAHSDLIYCVAFDASNSNSghTLASSRLFSSTDFFETERKVEdlgvgknARGIV 245
                     7788***********999566679********99989999999*******99988774433266889***********************9**** PP

                     EEEEETTEEEEEEE-...TTSS-EEEEEESSTSS-EE-SSS....-B-TT--EEEEEEESSEEEEEEE-SSSTSEEEEEEE-TTSSCEEEEEEEE CS
  Sortilin-Vps10 171 sfavvkeflvvavks...eetselalyvSldgkkfaeaefp...skkleekaytvlessehsiflavttssdkelgsllkSnsnGtsfvlslenv 259
                      fa+v++f vva+k+    +t  + lyv++d+k++a+a+fp   s +l+e+ayt++es++hs+ ++v t++++++g+l++SnsnGt+fv+sl ++
      CDO69676.1 246 AFAIVSKFAVVAMKDlseGSTGDMLLYVTVDTKNWAKARFPhssSARLRENAYTIVESTTHSLAVDVLTHDRSSIGTLFVSNSNGTFFVESLGDT 340
                     ***************98777889******************9888888***********************99********************** PP

                     B-TTTS-B--EEETTSTTEEEEEEE-T.........TS-EEEEEESSTTS-EEEEE--TTSSST...TT-SSSSB-EEEEE-HHHHHTT-S-SS- CS
  Sortilin-Vps10 260 nrneegyvdfekvegleGvilanvvknaeev.kkgakkklktkItfddGrtWellkppdkdkyg...csskklekcsLhLhsyteelerknvgrk 350
                     nrne gyvdfe++ g+eGv lanvv+na++v  + a+k+l+t+ItfddGr+W+ lkpp+ d++g   + + ++e+csLhLhs+t    ++n+gr 
      CDO69676.1 341 NRNEMGYVDFENIYGVEGVGLANVVANAKDVeARRASKQLQTRITFDDGRSWSRLKPPTLDNEGhkvHCNPDDENCSLHLHSVTL---PHNFGR- 431
                     *******************************889999************************7775433445789********998...9***98. PP

                     -B--TTSTT-EEEEEEEESSHHSS.S-EEEEESSSSSS-EEEESS-EEEEEEGGGTEEEEEE-SSS-B-EEEEESSTTSSEE CS
  Sortilin-Vps10 351 vfSspsApGlimgvGnvGkslksyeeadtfiSrDaGltWkevlkgahkyefGDqGsiivavkdeeketkelsYSlDeGktWe 432
                     vfSsp ApG++mgvG++G++l++yee+dtf+S D+G+ W++v+++ahkyefGDqGsi+vav+dee  +++lsYS+D G tW+
      CDO69676.1 432 VFSSP-APGFVMGVGSIGDHLQPYEECDTFLSIDGGIHWQMVRSDAHKYEFGDQGSILVAVNDEE-VVESLSYSTDFGMTWR 511
                     *****.**********************************************************7.***************6 PP

  == domain 2  score: 497.3 bits;  conditional E-value: 1.5e-152
                      EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS....S--EEESSETTEEEEE....... CS
  Sortilin-Vps10    2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpsl.saeplsfhakdkdwlialgek...k 90  
                      ++++S +eG tw+++   ++++++ ++++h +++++a+l+t+++k+++ttD G++w  +++p+ p+  +   l+fh++ +d++i++g+     
      CDO69676.1  716 SIWQSPNEGYTWNRLL--PEETFV-AFYHHAYSDDRAFLITNKNKFFYTTDTGQSWLPMDTPTIPNAfGLAVLHFHPTVSDYIIWTGQAgcdG 805 
                      79*************6..788888.6*************************************************************99*888 PP

                      ...BTTS-EEEESSTTSSEEEEESSEEEEEE-S.......TT-EEEEE-SSS-TTT....TTTSEEEEEESSTTSS-EEEE.EEEEEEEEETT CS
  Sortilin-Vps10   91 eskdckkkayystdggkswkklqesvkkcewakss..kkkeekilceekeeesese....ekkklrlvssddffkskkelksegvvsfavvke 177 
                      ++++c+ +a+ys ++g++w++++++v++c wa++s    + ++ilce+++++++++     ++ l+l++ ++f+++k++l+ ++vv+fa  +e
      CDO69676.1  806 FGESCRVEAHYSLNNGRKWTLIDKYVRNCAWARDSelLVDPNQILCESYKNKEGNQrffgLENPLELIAGTQFYDKKTKLF-DHVVGFAKFSE 897 
                      8999***************************99999999*************9888444458999****************.*********** PP

                      EEEEEEE-TTSS-EEEEEESSTSS-EE-SSS..-B-TT--EEEEEEESSEEEEEEE-SSST.S.EEEEEEE-TTSSCEEEEEEEEB-TTTS-B CS
  Sortilin-Vps10  178 flvvavkseetselalyvSldgkkfaeaefp.skkleekaytvlessehsiflavttssdk.e.lgsllkSnsnGtsfvlslenvnrneegyv 267 
                      fl+va+ +  +++l+++vSldg++fa  +fp s + e++ayt+less++sifl+vtts+   + +g++lkSnsnGt+f lsl+nvnrn++g+v
      CDO69676.1  898 FLIVAEFQAARQSLDIQVSLDGRNFAPGQFPpSLRPEQHAYTILESSTKSIFLHVTTSEPPaPyWGNILKSNSNGTYFGLSLDNVNRNDAGFV 990 
                      *******************************88899**********************866557***************************** PP

                      --EEETTSTTEEEEEEE-T........TS-EEEEEESSTTS-EEEEE--TTSSST.TT-SSSSB-EEEEE-HHHHHTT-S-SS--B--TTSTT CS
  Sortilin-Vps10  268 dfekvegleGvilanvvknaeevkkgakkklktkItfddGrtWellkppdkdkyg.csskklekcsLhLhsyteelerknvgrkvfSspsApG 359 
                      dfek+ +l+G++l+nvv+n++e+  + +k l+t+It++dG++W++l++p +d++g ++ ++++kc+Lh+h+yte   r ++ r+++S+ps pG
      CDO69676.1  991 DFEKMINLDGIALVNVVSNPHEAPLTGRKLLRTRITHNDGGSWRPLPAPLTDSQGnKYACDTTKCNLHIHGYTE---RYDT-RATYSTPSVPG 1079
                      ****************************************************88879****************9...6674.89********* PP

                      -EEEEEEEESSHHSS.S-EEEEESSSSSS-EEEESS-EEEEEEGGGTEEEEEE-SSS-B-EEEEESSTTSSEEEEE--SS-BEEEEE CS
  Sortilin-Vps10  360 limgvGnvGkslksyeeadtfiSrDaGltWkevlkgahkyefGDqGsiivavkdeeketkelsYSlDeGktWeeykfsdekirvldl 446 
                      l+m+vGnvG+ l++y+++dtf+SrD+G+tW+ev+k+ah +efGD+Gsi+v+ +de+ +t+++ +S DeG tW+eykf+de++rv+ +
      CDO69676.1 1080 LLMAVGNVGEFLEPYDQSDTFLSRDGGFTWEEVHKDAHLWEFGDSGSILVMANDEG-PTDHVMFSKDEGLTWREYKFTDEPMRVKAI 1165
                      *******************************************************7.**************************9875 PP

>> Sortilin_C  Sortilin, neurotensin receptor 3, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   3.9   2.8e-52   7.1e-49       1     170 []     531     692 ..     531     692 .. 0.92
   2 !  156.1   1.7   4.1e-49   1.1e-45       1     170 []    1167    1335 ..    1167    1335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 2.8e-52
  Sortilin_C   1 tepdstslkflllgksssed...kekvvvislDFsklferkCkeeeDyekwsareeekkekCllGhkqkyrrrkkdakCfvgekfkdpkv.eenCeCte 95 
                 t+ dsts+kfll+g+  ++    +++  v+ lDF++l +rkC  ++D+e+w+ar++  +++Cl+Ghkq+yrrrk+da+C+vgekf+dp+  e++C+Ct+
  CDO69676.1 531 TVGDSTSQKFLLVGQIPKRAqngNGRFGVVFLDFATLDRRKCG-DSDFENWQARSS--THECLMGHKQSYRRRKQDADCYVGEKFRDPVPnEDPCPCTD 626
                 56799*********9988877776889999************5.88********85..78***************************9998999***** PP

  Sortilin_C  96 eDfeCdynfereesegkCvlaeklevpdeeekevCkkkkkkeksylkssgyrkipgntCeggkekdkdekvekpC 170
                 eD+eCdyn++r+ +  kCv+a+++++++++    C   +++++ yl+ssgyr+ipgntC+ ++  +kde v+kpC
  CDO69676.1 627 EDYECDYNYIRDGD--KCVAAGPEPIEPGV----CV--EPTDT-YLGSSGYRRIPGNTCDRDRGVKKDERVQKPC 692
                 ***********977..************88....*4..57677.***************99988999*******9 PP

  == domain 2  score: 156.1 bits;  conditional E-value: 4.1e-49
  Sortilin_C    1 tepdstslkflllgksssedkekvvvislDFsklferkCke......eeDyekwsareeekkekCllGhkqkyrrrkkdakCfvgekfkdpkv.een 90  
                  t+p++ s++f+l+g+  ++ k++ v++++DFs+l++rkC        ++D+e ws++e  ++e+Cl+G+++ y+rrk++a+C+vg++ k +++ +++
  CDO69676.1 1167 TVPSDISRRFILMGYYPRS-KNTAVAVHIDFSALTSRKCVLdvedpnHDDFELWSPSE-GREEQCLFGKQTLYHRRKRNADCVVGDQKKAQEKiVKH 1261
                  799**************99.5688888************9899999878********7.5699***********************98887766*** PP

  Sortilin_C   91 CeCteeDfeCdynfereesegkCvlaeklevpdeeekevCkkkkkkeksylkssgyrkipgntCeggkekdkdekvekpC 170 
                  C Cte+DfeC+yn+ r+++ g+Cvl ++l+++d +  ++C+  + ++ +y+  ++yrkip++ Cegg +   d+   +pC
  CDO69676.1 1262 CACTESDFECEYNYARNQD-GECVLMPGLSPRDPDPIDQCR--SGEDYWYE-LTPYRKIPNSACEGGPR--LDRGRAHPC 1335
                  ****************977.9************9988***4..45556666.***************44..455578888 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0018       4.5       2      12 .]      60      70 ..      59      70 .. 0.89
   2 !    6.8   0.7    0.0034       8.8       1      11 [.     102     112 ..     102     113 .. 0.89
   3 !    6.5   0.3    0.0043        11       2      12 .]     384     394 ..     383     394 .. 0.90
   4 !    6.6   0.0    0.0039        10       1      11 [.     460     470 ..     460     471 .. 0.89
   5 !    9.7   0.4   0.00039         1       2      11 ..     502     511 ..     501     512 .. 0.92
   6 ?    0.1   0.0      0.58   1.5e+03       5      11 ..     722     728 ..     720     729 .. 0.84
   7 ?    2.7   1.8     0.076     2e+02       1      10 [.     759     768 ..     759     768 .. 0.97
   8 ?    4.0   0.0     0.029        74       2      11 ..     816     825 ..     815     826 .. 0.90
   9 ?    3.3   0.1     0.049   1.3e+02       2      11 ..    1025    1034 ..    1024    1035 .. 0.88
  10 ?    4.1   0.1     0.026        66       1      11 [.    1100    1110 ..    1100    1111 .. 0.89
  11 !    5.5   0.0    0.0095        24       2      11 ..    1142    1151 ..    1141    1152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0018
                EESSTTSS-EE CS
         BNR  2 yStDgGktWsk 12
                +S D GktW++
  CDO69676.1 60 VSEDEGKTWQL 70
                79*******95 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0034
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + + D+GktW+
  CDO69676.1 102 WRTIDRGKTWQ 112
                 6799******8 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0043
                 EESSTTSS-EE CS
         BNR   2 yStDgGktWsk 12 
                 +++D G++Ws+
  CDO69676.1 384 ITFDDGRSWSR 394
                 89*******95 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0039
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + S DgG+ W+
  CDO69676.1 460 FLSIDGGIHWQ 470
                 679*******8 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00039
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 yStD+G+tW 
  CDO69676.1 502 YSTDFGMTWR 511
                 9********6 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.58
                 STTSS-E CS
         BNR   5 DgGktWs 11 
                 + G+tW+
  CDO69676.1 722 NEGYTWN 728
                 78****8 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.076
                 EEESSTTSS- CS
         BNR   1 yyStDgGktW 10 
                 +y+tD G++W
  CDO69676.1 759 FYTTDTGQSW 768
                 8********* PP

  == domain 8  score: 4.0 bits;  conditional E-value: 0.029
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 yS ++G+ W+
  CDO69676.1 816 YSLNNGRKWT 825
                 9********8 PP

  == domain 9  score: 3.3 bits;  conditional E-value: 0.049
                  EESSTTSS-E CS
         BNR    2 yStDgGktWs 11  
                  ++++ G +W 
  CDO69676.1 1025 ITHNDGGSWR 1034
                  89*******7 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.026
                  EEESSTTSS-E CS
         BNR    1 yyStDgGktWs 11  
                  + S+DgG tW+
  CDO69676.1 1100 FLSRDGGFTWE 1110
                  68********8 PP

  == domain 11  score: 5.5 bits;  conditional E-value: 0.0095
                  EESSTTSS-E CS
         BNR    2 yStDgGktWs 11  
                  +S+D G tW 
  CDO69676.1 1142 FSKDEGLTWR 1151
                  8********7 PP

>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00016      0.42     140     202 ..      58     115 ..      48     132 .. 0.84
   2 ?   -3.6   0.0       2.1   5.5e+03      64     158 ..     269     292 ..     254     345 .. 0.60
   3 ?    0.9   0.0     0.088   2.2e+02     179     210 ..     373     404 ..     357     424 .. 0.78
   4 ?   -0.2   0.0       0.2   5.1e+02     114     151 ..     474     511 ..     452     532 .. 0.57
   5 ?   -2.0   0.0      0.69   1.8e+03     175     228 ..     706     754 ..     676     779 .. 0.51
   6 ?   -1.2   0.0      0.38   9.8e+02     225     252 ..    1006    1036 ..     977    1055 .. 0.77
   7 !    5.2   0.0    0.0043        11     142     214 ..    1101    1166 ..    1088    1197 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                 EEEESSTTSS-EE----SSSEEEEEEEE.EEETTEEEEEEEE...EEEEEEESSTTSS-EEE- CS
       BNR_2 140 lelsddggktWkkgrvveqisgeiqpsilvekdgslvalaRsrkaaileseSedgGetWskve 202
                 +++s+d+gktW+    v+++ ++  + + + +++ + +l Rs+++     ++ d+G+tW+  e
  CDO69676.1  58 VHVSEDEGKTWQLAPGVQEG-RASMVIEHPFDNKIAFILSRSTTHW----RTIDRGKTWQSFE 115
                 789**************777.77777777888889999****9887....89*******9966 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.1
                 EEEEEEEEETT--HHT----EEEESSTTSS----EHHHGGEEEEEE-SS--..EE--T--EEEEEE..SS--EEEEEEEESSTTSS-EE----S....S CS
       BNR_2  64 liLfykvgvsvggwagskitrvtSkDdGktWsaprrlpkspflnisgpvknkpiqladGrlilPsshelagkwrallelsddggktWkkgrvve....q 158
                 ++L+  v+v+ ++                                                                         W k r+++    +
  CDO69676.1 269 MLLY--VTVDTKN-------------------------------------------------------------------------WAKARFPHsssaR 292
                 3333..3334444.........................................................................4444444433331 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.088
                 EEE...EEEEEEESSTTSS-EEE-EEEEE--- CS
       BNR_2 179 aRsrkaaileseSedgGetWskveltslpnpn 210
                 aR+ ++++ +  + d+G++Ws++++ +l n  
  CDO69676.1 373 ARRASKQLQTRITFDDGRSWSRLKPPTLDNEG 404
                 56666666677788999999998888777765 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.2
                 -..EE--...T--EEEEEE..SS--EEEEEEEESSTTSS-E CS
       BNR_2 114 nkpiqla...dGrlilPsshelagkwrallelsddggktWk 151
                  +++ ++   +G++++++  e   +  + l +s+d g tW+
  CDO69676.1 474 SDAHKYEfgdQGSILVAVNDE---EVVESLSYSTDFGMTWR 511
                 333333333344444444433...34444444444444444 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.69
                 EEEEEEE...EEEEEEESSTTSS-EE..E-EEEEE----.......---SEEEEEE CS
       BNR_2 175 lvalaRsrkaaileseSedgGetWsk..veltslpnpnsgidavtlkdgrlllvyN 228
                  ++l+R   + i+  +S ++G tW++  +e t +  +       + +d+r +l++N
  CDO69676.1 706 TTILVRLADNSIW--QSPNEGYTWNRllPEETFVAFYHH-----AYSDDRAFLITN 754
                 5555555444443..344555555554444443333333.....333444444444 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 0.38
                  EEEEEE--...SSEEEEEEESTT-GGG---- CS
       BNR_2  225 lvyNhesa...pRkpLtvalskdngkswkev 252 
                  +v+N+ +a   +Rk L  ++++++g sw+++
  CDO69676.1 1006 VVSNPHEApltGRKLLRTRITHNDGGSWRPL 1036
                  566643445778********9999****965 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.0043
                  EESSTTSS-EE----SSSEEEEEEEE.EEETTEEEEEEEE...EEEEEEESSTTSS-EEE-EEEEE----... CS
       BNR_2  142 lsddggktWkkgrvveqisgeiqpsilvekdgslvalaRsrkaaileseSedgGetWskveltslpnpnsgid 214 
                  ls+dgg tW++++ ++++       ++  ++gs+ ++a ++  + ++  S+d+G tW++ + t+ p   ++i 
  CDO69676.1 1101 LSRDGGFTWEEVHKDAHL------WEF-GDSGSILVMANDEGPTDHVMFSKDEGLTWREYKFTDEPMRVKAIV 1166
                  566666666666665433......222.333445554444444556666666666666666665555555444 PP

>> CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   4.8e+03      37      49 ..      58      70 ..      57      76 .. 0.82
   2 ?   -3.5   0.0       4.2   1.1e+04      40      51 ..     104     115 ..     104     125 .. 0.78
   3 ?   -0.3   0.0      0.41   1.1e+03      35      55 ..     380     398 ..     365     412 .. 0.77
   4 ?    0.8   0.0      0.19   4.9e+02      37      75 ..     500     537 ..     498     539 .. 0.79
   5 ?    0.5   0.0      0.24   6.3e+02      39      56 ..     760     775 ..     757     785 .. 0.82
   6 ?   -0.0   0.0      0.34   8.8e+02      38      54 ..     815     832 ..     812     841 .. 0.81
   7 ?   -4.1   0.0       6.4   1.6e+04      40      52 ..    1102    1114 ..    1102    1120 .. 0.80
   8 !   11.4   0.0   9.1e-05      0.23      26      64 ..    1129    1168 ..    1125    1173 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
   CHB_HEX_C 37 ieYsldggetwqk 49
                +  s d+g+twq 
  CDO69676.1 58 VHVSEDEGKTWQL 70
                66799******85 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.2
   CHB_HEX_C  40 sldggetwqkyt 51 
                 ++d g+twq  +
  CDO69676.1 104 TIDRGKTWQSFE 115
                 5799****9887 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.41
   CHB_HEX_C  35 ltieYsldggetwqkytayep 55 
                 l+ + + d+g++w++ +   p
  CDO69676.1 380 LQTRITFDDGRSWSRLK--PP 398
                 788999*******9988..44 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.19
   CHB_HEX_C  37 ieYsldggetwqkytayepvavsgkvklrsvsadgkrks 75 
                 + Ys+d g tw+ +t ++  +++ ++  r  ++ g+ +s
  CDO69676.1 500 LSYSTDFGMTWRFIT-RKSYNFGIPIRARILTTVGDSTS 537
                 68*********9999.57777777888888887777766 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.24
   CHB_HEX_C  39 Ysldggetwqkytayepv 56 
                 Y++d g++w  ++  +p+
  CDO69676.1 760 YTTDTGQSWLPMD--TPT 775
                 9********9999..544 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.34
   CHB_HEX_C  38 eYsldggetwqkytay.e 54 
                  Ysl++g++w+ +++y +
  CDO69676.1 815 HYSLNNGRKWTLIDKYvR 832
                 7*********99987655 PP

  == domain 7  score: -4.1 bits;  conditional E-value: 6.4
   CHB_HEX_C   40 sldggetwqkyta 52  
                  s dgg tw+++++
  CDO69676.1 1102 SRDGGFTWEEVHK 1114
                  679******9984 PP

  == domain 8  score: 11.4 bits;  conditional E-value: 9.1e-05
   CHB_HEX_C   26 LeanvalPGltieYsldggetwqkytay.epvavsgkvkl 64  
                  + an + P  ++++s d+g tw++y+ + ep++v+  v +
  CDO69676.1 1129 VMANDEGPTDHVMFSKDEGLTWREYKFTdEPMRVKAIVTV 1168
                  56888889999***********************996655 PP

>> PSII_BNR  Photosynthesis system II assembly factor YCF48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0028       7.1     245     295 ..      47      97 ..      41     105 .. 0.79
   2 !    4.0   0.0    0.0095        24      63      94 ..     737     768 ..     698     785 .. 0.55
   3 ?   -0.7   0.0      0.27   6.9e+02      45      94 ..    1104    1150 ..    1095    1170 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0028
                 S-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S CS
    PSII_BNR 245 keiwvaGGsgtllvskDgGktwkkdksaekvpsnlykikfleedkgfvlGe 295
                 + i+     g++ vs+D+Gktw+  + +++  + ++  + ++++ +f+l  
  CDO69676.1  47 NAIYHDVVKGNVHVSEDEGKTWQLAPGVQEGRASMVIEHPFDNKIAFILSR 97 
                 55666666899**************99998887777666677788888865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0095
                 -EEEEEEEETTEEEEEEETTEEEEESSTTSS- CS
    PSII_BNR  63 yrlesvsfkgdegwivGkPslllhttdgGksW 94 
                 + + +  +++d ++++ + + +++ttd G+sW
  CDO69676.1 737 VAFYHHAYSDDRAFLITNKNKFFYTTDTGQSW 768
                 33333333333333333333333333333333 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.27
                  STTSS-EE-----S-.-.--EEEEEEEETTEEEEEEETTEEEEESSTTSS- CS
    PSII_BNR   45 DGGktWeersldlee.evnyrlesvsfkgdegwivGkPslllhttdgGksW 94  
                  DGG tWee + d++  e+  + + + +++deg        ++ ++d+G +W
  CDO69676.1 1104 DGGFTWEEVHKDAHLwEFGDSGSILVMANDEG----PTDHVMFSKDEGLTW 1150
                  55555554443222101111222223333332....223344444444444 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0088        23      48      66 ..      58      76 ..      54     102 .. 0.83
   2 ?   -0.2   0.0      0.36   9.2e+02      51      66 ..     104     119 ..     102     146 .. 0.71
   3 ?   -1.5   0.0      0.89   2.3e+03      49      61 ..     383     395 ..     379     425 .. 0.79
   4 ?   -2.8   0.0       2.3   5.9e+03      51      66 ..     462     477 ..     461     487 .. 0.81
   5 ?   -2.8   0.0       2.2   5.7e+03      98     121 ..     704     728 ..     700     730 .. 0.80
   6 ?    1.3   0.0      0.13   3.2e+02      42      60 ..    1017    1035 ..    1015    1062 .. 0.84
   7 ?   -1.6   0.0         1   2.6e+03      49      69 ..    1141    1161 ..    1138    1173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0088
                 EEEESSTTSS-EE-EEESS CS
  Mo-co_dimer 48 vevsldkGksWklaeieye 66
                 v vs d+Gk+W+la   +e
   CDO69676.1 58 VHVSEDEGKTWQLAPGVQE 76
                 89***********975555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.36
                  ESSTTSS-EE-EEESS CS
  Mo-co_dimer  51 sldkGksWklaeieye 66 
                  ++d+Gk+W+  e+  +
   CDO69676.1 104 TIDRGKTWQSFEMPLP 119
                  79*******9988765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.89
                  EEESSTTSS-EE- CS
  Mo-co_dimer  49 evsldkGksWkla 61 
                   ++ d+G+sW+  
   CDO69676.1 383 RITFDDGRSWSRL 395
                  589*******864 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.3
                  ESSTTSS-EE-EEESS CS
  Mo-co_dimer  51 sldkGksWklaeieye 66 
                  s+d+G  W++++ + +
   CDO69676.1 462 SIDGGIHWQMVRSDAH 477
                  89*******9998776 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 2.2
                  .E.EEEEEEEETT--B--S.HHH-- CS
  Mo-co_dimer  98 kekeilvravDealnvqPe.emiwn 121
                  +++ ilvr  D+++   P+   +wn
   CDO69676.1 704 HQTTILVRLADNSIWQSPNeGYTWN 728
                  677899********99999556687 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.13
                   T--EEEEEEESSTTSS-EE CS
  Mo-co_dimer   42 GrritrvevsldkGksWkl 60  
                   Gr++ r  ++ ++G sW+ 
   CDO69676.1 1017 GRKLLRTRITHNDGGSWRP 1035
                   9****************84 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 1
                   EEESSTTSS-EE-EEESSSSS CS
  Mo-co_dimer   49 evsldkGksWklaeieyeedk 69  
                     s d+G +W+  + + e  +
   CDO69676.1 1141 MFSKDEGLTWREYKFTDEPMR 1161
                   5689*******9998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 9606.67
//
Query:       CDO69677.1  [L=561]
Description: hypothetical protein BN946_scf184851.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-32  112.7   0.0    2.5e-32  112.1   0.0    1.3  1  Pro-kuma_activ  Pro-kumamolisin, activation domain
    6.2e-07   29.0   0.0    1.3e-06   27.9   0.0    1.5  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   2.8e-36   2.5e-32       7     142 .]      35     170 ..      29     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 2.8e-36
  Pro-kuma_activ   7 graasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqverll 101
                      +a+++  +++++gL+  n++ l+++l dvsdpks+nygkhl++ ev++ +ap++++++aV++wL+++gi  + +s++++++ ++++v++++ ll
      CDO69677.1  35 RPAPATSSVQLTLGLTAANIDGLHAALYDVSDPKSANYGKHLSKTEVEAFVAPKPDTMKAVTDWLTQQGIYPKVISPSGDMLRIDVPVSKANALL 129
                     67889999*************************************************************************************** PP

  Pro-kuma_activ 102 ktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     +++f  ++ +k++ +l+r+ ++ +P+ l+ + +++ pt +f
      CDO69677.1 130 GANFTVFKDQKSGATLVRTLTVTVPDGLEPHLQFVYPTIQF 170
                     **************************************987 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.5e-10   1.3e-06      80     266 ..     281     495 ..     266     501 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.5e-10
                   SSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHH.....HHHHHH.CCT-EEEEE--SS-T-HHE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  80 gekngvapgakilsvkvldtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsieal.....ainravnkkgvlvviSaGNngktgss 171
                   ++  gva+g+  + + v+d+   ++      i ++  a e+ + v+  s+g  ++ ++++ s   +     ++ ++   +g+ v +S+G ng +  +
    CDO69677.1 281 QYTTGVATGVATTFYSVGDPGPFAQS--FLDIVNFLVAQENLPGVLTTSYG--FDEDEFVGSEGLAntfcnVYAQLG-ARGTSVFFSSGDNGVYSFG 372
                   55666666666666666666666553..23333444455556678888888..555555544443357777777777.78************88775 PP

                   EE-TTCEEC.....TTTSTTCEEEEEES.....................................TTSSB-TT--B-TT.......-EEEE-S-CCC CS
                   xxxxxxxxx.....xxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 172 lqagspvgt.....pstsknvitvgayt.....................................tegkiapfSsrGpssdgklkpdivapGgnivs 226
                   + ++++  t     pst+   ++vg+++                                     +      f ++     g++ pdi+a  +n   
    CDO69677.1 373 FDSTCDATTfgptfPSTCPFLTSVGGTQgftpevaaafssggfsnlfgrpeyqdsavegylavlgD-TFNGLFNRS-----GRAYPDISAQSVN--- 460
                   55555554444578****************999999998888888888888888885555444321.111233333.....4555888888888... PP

                   CCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHH.HHT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Peptidase_S8 227 twsrqsnnsaglssyqsmsGTSmAsPnaagaaAllls.alp 266
                    + ++ n       + + +GTS++sP++a+++All + +l+
    CDO69677.1 461 -YVTRINGV-----FGLLEGTSASSPVVASVVALLNDaRLN 495
                   .33333222.....899******************984444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3847.67
//
Query:       CDO69678.1  [L=458]
Description: hypothetical protein BN946_scf184851.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-17   63.3   0.0    4.3e-17   62.5   0.0    1.4  1  Ran_BP1   RanBP1 domain
  ------ inclusion threshold ------
       0.14   12.7   0.0       0.28   11.8   0.0    1.6  1  YjbR      YjbR
        4.1    7.7   9.5      0.093   13.0   1.7    2.3  2  TPX2      Targeting protein for Xklp2 (TPX2)


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   7.2e-21   4.3e-17       1      72 [.     341     412 ..     341     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 7.2e-21
                 ----SSTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTT.TEEEEEEEETTTTEEEEEEEE-TTS-E CS
     Ran_BP1   1 evksgEEdEevlfkqraKLfrfdaekkewkeRGvGdiKilkkkdd.ekvRllmRrdqvlkvcaNhvitkemkl 72 
                 ev++gEEdE++++++r KLf ++ + ++wkeRG+G ++++ +++d +  Rl+mR++ v  v++N+++ k m+ 
  CDO69678.1 341 EVHTGEEDEDTVYQVRGKLFALSPQ-NQWKERGTGTLRLNVRREDgGGARLVMRKEAVYTVLLNATLFKGMRC 412
                 89********************875.79************9999989*********************99974 PP

>> YjbR  YjbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.6e-05      0.28      10      55 ..     342     398 ..     335     451 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
                 ECTT..S-.EEEECCCEEEEEEECCCCG........EEEES-HHHHHHHHHSSTTEE CS
        YjbR  10 fpfg..pe.lvfkvggKmFallgleees........lnlkcdpeeaeaLreqypaia 55 
                 ++ g  +e +v++v+gK Fal  +++ +        ln++ ++   + L+++++a++
  CDO69678.1 342 VHTGeeDEdTVYQVRGKLFALSPQNQWKergtgtlrLNVRREDGGGARLVMRKEAVY 398
                 4443334579***********998777577888988999998888888888887754 PP

>> TPX2  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.2       1.5     9e+03      30      39 ..      71      80 ..      55      83 .. 0.50
   2 ?   13.0   1.7   1.6e-05     0.093       7      50 ..     316     359 ..     313     361 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.5
        TPX2 30 ereakkkeee 39
                ++ea+++e e
  CDO69678.1 71 ALEATQEETE 80
                3444444444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.6e-05
        TPX2   7 AekRkeFdkkleekekakeaekeereakkkeeeeeeikqLRkel 50 
                 Ae R  Fd++ e+ e++k+   +++e  + ee e  + q+R +l
  CDO69678.1 316 AETRSAFDQEDEQSEEEKKLNLQQQEVHTGEEDEDTVYQVRGKL 359
                 899**************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3261.65
//
Query:       CDO69679.1  [L=288]
Description: hypothetical protein BN946_scf184851.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2009.09
//
Query:       CDO69680.1  [L=936]
Description: hypothetical protein BN946_scf184851.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00018   22.3   0.0    0.00018   22.3   0.0    3.4  3  Rxt3      Histone deacetylation protein Rxt3


Domain annotation for each model (and alignments):
>> Rxt3  Histone deacetylation protein Rxt3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.19   3.4e+03      62      88 ..       6      32 ..       1      65 [. 0.37
   2 ?   -2.7   3.7      0.55   9.8e+03      77      78 ..     166     167 ..     124     233 .. 0.53
   3 !   22.3   0.0   9.8e-09   0.00018      25      52 ..     517     542 ..     515     598 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.19
        Rxt3 62 kkkakkkskeekskdeseaekklekkk 88
                +++++++++++++++ ++++++  +++
  CDO69680.1  6 QQQEREREERNREMRRESQREEDFRRH 32
                222222222233332222222222222 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.55
        Rxt3  77 es 78 
                 ++
  CDO69680.1 166 AA 167
                 11 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 9.8e-09
        Rxt3  25 GtdvYtdDSDvvaaliHsGfirgewaed 52 
                 G  vYtdDSD  + ++HsG+i  +w+  
  CDO69680.1 517 GRRVYTDDSDLFLCALHSGWI--SWSMA 542
                 778******************..55543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 5860.29
//
Query:       CDO69681.1  [L=373]
Description: hypothetical protein BN946_scf184851.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0002   21.5   1.9       0.17   12.0   0.0    3.8  4  PI_PP_I          Phosphoinositide phosphatase insertion domai
     0.0002   21.4   3.2      0.012   15.7   0.4    3.0  2  DUF2730          Protein of unknown function (DUF2730)
     0.0025   17.1   3.6     0.0039   16.5   0.1    2.7  3  DUF3450          Protein of unknown function (DUF3450)
     0.0029   17.6   9.8      0.022   14.8   3.0    2.8  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
     0.0031   17.7  16.0          2    8.7   0.1    4.6  4  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
     0.0055   17.2  10.5       0.27   11.8   2.7    2.9  3  APG6_N           Apg6 coiled-coil region
     0.0077   16.7  11.8        3.2    8.3   1.7    4.7  4  NPV_P10          Nucleopolyhedrovirus P10 protein
  ------ inclusion threshold ------
       0.01   15.4   5.0      0.041   13.4   0.0    2.8  3  Golgin_A5        Golgin subfamily A member 5
      0.036   13.9   1.0      0.085   12.7   0.2    2.0  2  USP8_interact    USP8 interacting
      0.038   14.3   0.5       0.99    9.8   0.0    3.0  3  DUF2383          Domain of unknown function (DUF2383)
      0.053   13.9   9.8       0.16   12.4   0.9    3.3  3  Snapin_Pallidin  Snapin/Pallidin
      0.073   12.6  10.1       0.23   11.0   0.2    3.0  3  Filament         Intermediate filament protein
      0.074   13.5  10.6      0.099   13.1   1.8    3.6  3  ZapB             Cell division protein ZapB
      0.076   13.1   7.3        1.8    8.7   0.9    3.7  3  TRPM_tetra       Tetramerisation domain of TRPM
       0.11   11.9   5.2       0.31   10.4   0.3    2.8  3  DUF4618          Domain of unknown function (DUF4618)
       0.12   12.4  14.3        1.4    9.0   0.1    3.9  4  Laminin_II       Laminin Domain II
       0.14   12.2  11.7         13    5.8   0.2    4.0  3  DUF1664          Protein of unknown function (DUF1664)
       0.14   12.4   6.5        5.8    7.2   0.7    3.5  3  Spc24            Spc24 subunit of Ndc80
       0.14   12.5   1.0        5.7    7.3   0.0    3.3  3  PqqD             Coenzyme PQQ synthesis protein D (PqqD)
       0.15   12.1   9.1       0.15   12.1   1.5    3.5  4  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
       0.15   12.5  12.0       0.36   11.3   0.2    4.0  3  DUF4140          N-terminal domain of unknown function (DUF41
       0.21   11.9  11.9       0.73   10.2   2.6    3.9  4  BLOC1_2          Biogenesis of lysosome-related organelles co
        0.4   10.3   7.4        1.3    8.6   4.8    3.2  3  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
       0.47   10.9   7.9          7    7.1   0.1    4.2  4  FlaC_arch        Flagella accessory protein C (FlaC)
       0.48   11.3  11.1        1.2   10.1   0.3    3.8  4  PRKG1_interact   cGMP-dependent protein kinase interacting do
       0.56    9.5  11.8        1.5    8.2   1.4    3.3  4  GAS              Growth-arrest specific micro-tubule binding
       0.59    9.6  11.3      0.044   13.3   1.4    2.8  3  Leu_zip          Leucine zipper
       0.76    9.8   8.3        1.1    9.2   0.7    3.5  4  FlxA             FlxA-like protein
        1.3    9.1   9.4        1.7    8.7   0.1    4.1  5  COG2             COG (conserved oligomeric Golgi) complex com
        1.5    9.2   8.7          4    7.8   4.9    2.6  2  Fez1             Fez1
        1.5    9.0  11.5       0.15   12.2   2.1    3.6  4  JIP_LZII         JNK-interacting protein  leucine zipper II
        1.7    9.0   5.3         21    5.5   0.1    3.6  3  Retrotrans_gag   Retrotransposon gag protein
        1.9    8.5  11.7         16    5.4   3.0    3.6  2  Rootletin        Ciliary rootlet component, centrosome cohesi
        2.7    8.2   8.3       0.45   10.7   0.3    2.9  3  SesA             N-terminal domain on NACHT_NTPase and P-loop
        2.8    7.8  12.7        5.9    6.8   0.1    3.9  3  Sec34            Sec34-like family
        2.8    7.5   8.1        6.8    6.2   0.4    3.0  3  Phage_GPO        Phage capsid scaffolding protein (GPO) serin
        2.9    8.3  13.8         31    5.1   0.0    5.1  5  LPP              Lipoprotein leucine-zipper
        3.6    7.6  13.0       0.18   11.8   0.4    3.4  3  Sec2p            GDP/GTP exchange factor Sec2p
        4.1    7.9   6.5         34    5.0   0.1    4.0  4  CRR7             Protein CHLORORESPIRATORY REDUCTION 7
        4.6    7.6  10.1        0.4   11.0   2.4    3.0  3  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
        5.3    7.2  14.1        2.7    8.1   0.4    3.8  3  Mod_r            Modifier of rudimentary (Mod(r)) protein
        7.7    6.4   7.0          2    8.3   0.7    2.6  2  SSFA2_C          Sperm-specific antigen 2 C-terminus
          8    6.2  15.5      0.064   13.1   4.0    2.9  3  KASH_CCD         Coiled-coil region of CCDC155 or KASH


Domain annotation for each model (and alignments):
>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       3.4   1.4e+03      24      48 ..      83     107 ..      61     111 .. 0.74
   2 ?    5.6   0.0     0.042        18      25      77 ..     158     211 ..     132     222 .. 0.74
   3 ?   -0.8   0.0       4.4   1.8e+03      38      57 ..     256     275 ..     240     286 .. 0.53
   4 !   12.0   0.0   0.00042      0.17      10      79 ..     287     356 ..     281     367 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 3.4
                 -SHHHHHHHHHHHHHHHHHHHHH-S CS
     PI_PP_I  24 aslkklkqdlnqfllkWeeikktsl 48 
                 a+  + k ++ q+  +W+e +++s+
  CDO69681.1  83 ANFLDDKNNVIQLGSQWHEFQTRSM 107
                 4455556777888999999998887 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.042
                 SHHHHHHHHHHHHHHHHHHH.HH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHH CS
     PI_PP_I  25 slkklkqdlnqfllkWeeik.ktslsLeedLnkiannktplPsWfnelskaqqe 77 
                 +  +l+ dl +f+   e i  k ++ L++dL++ +++ + l   ++e+  + q+
  CDO69681.1 158 EFGRLAIDLRNFTAVLEGIFkKANVRLATDLQATRTKLEGLRVQLKEVTDKIQS 211
                 4567899**********99648899*******9998877766666665555555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 4.4
                 HHHHHHHHH-SSHHHHHHHH CS
     PI_PP_I  38 lkWeeikktslsLeedLnki 57 
                  + ++ k++  sL++++n +
  CDO69681.1 256 NEIDKAKQKENSLKTEINVL 275
                 33344444444555554444 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00042
                 HHHHHHHHC--TT--SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHHHH CS
     PI_PP_I  10 eyqqaYflnleskeaslkklkqdlnqfllkWeeikktslsLeedLnkiannktplPsWfnelskaqqell 79 
                 e+   Y+++le ++ ++++l+ ++  +   W+ ++   ++L + L++    + pl  +f +  +a ++l 
  CDO69681.1 287 ELLARYMCTLEATKGDINSLADKVDAISNIWQCLRADMIKLDTALSNTVDPNMPLTYFFMKKIRATRALY 356
                 66778*****************************************999999999999988777777665 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.058        24      62      91 ..     185     214 ..     156     217 .. 0.91
   2 !   15.7   0.4   2.9e-05     0.012      31      94 ..     254     318 ..     232     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.058
     DUF2730  62 akdlekLkllladlrgelkaleaevrqlsh 91 
                 a dl++ +++l++lr +lk+++ +++++s 
  CDO69681.1 185 ATDLQATRTKLEGLRVQLKEVTDKIQSMSE 214
                 679999999****************99986 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.9e-05
     DUF2730  31 kredleklaekveendkrlteletkvenLPtakd.lekLkllladlrgelkaleaevrqlshqvd 94 
                  r+++ k ++k ++ ++ ++ le+++++L  +++ l++ + +l+ ++g+++ l+ +v+++s   +
  CDO69681.1 254 LRNEIDKAKQKENSLKTEINVLEAQLADLLAKEElLARYMCTLEATKGDINSLADKVDAISNIWQ 318
                 488899999999999999999******998888835899*********************98765 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.8   1.2e+03      65      86 ..     133     154 ..     124     176 .. 0.54
   2 ?   -0.1   0.1       1.1   4.8e+02      49      79 ..     184     214 ..     177     219 .. 0.78
   3 !   16.5   0.1   9.4e-06    0.0039      29     119 ..     248     341 ..     228     354 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.8
     DUF3450  65 vyneqlerlvasqeqeiaslee 86 
                 + +e+l+  va+++q+ ++  +
  CDO69681.1 133 ALREELQGFVAQLKQKADDASR 154
                 3333333333333333333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
     DUF3450  49 llaeyralkeeleslevyneqlerlvasqeq 79 
                 l+ +++a +++le l+v+ +++++ ++s+ +
  CDO69681.1 184 LATDLQATRTKLEGLRVQLKEVTDKIQSMSE 214
                 5667888888889999999998888888765 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 9.4e-06
     DUF3450  29 vaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlv...asqeqeiasleeqieeieeierelvpllekmidrLeqfveldlPf 119
                 +++++   ++idk +++ ++l+ e++ l+++l++l +++e l+r++   ++ + +i+sl  + + i++i + l   + k+ ++L + v   +P 
  CDO69681.1 248 THEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMctlEATKGDINSLADKVDAISNIWQCLRADMIKLDTALSNTVDPNMPL 341
                 5667777899******************************999986222566678999999999999999999999999999999999888885 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.6     0.028        12      36     110 ..     134     209 ..     125     219 .. 0.64
   2 !   14.8   3.0   5.2e-05     0.022       4      78 ..     250     327 ..     245     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.028
  CENP-F_leu_zip  36 seenqekvileaEtskaevetlkeeieelaeelreleldLval.rsekeeLekelqkkqervseLeslnsslenll 110
                     + e+++  + +  ++   ++  k e  +la  lr++++ L+ + ++ +  L+ +lq  + + + L     +++  +
      CDO69681.1 134 LREELQGFVAQLKQKADDASRAKGEFGRLAIDLRNFTAVLEGIfKKANVRLATDLQATRTKLEGLRVQLKEVTDKI 209
                     5566666677777777777777777777777777777777654256667777777777777666655544444444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.2e-05
  CENP-F_leu_zip   4 kklhvlekLKeserkadsLkdkvenLerelemseenqekv...ileaEtskaevetlkeeieelaeelreleldLval 78 
                     +++ ++++  ++++k++sLk  ++ Le++l ++ ++ e +   +   E  k  +++l ++++ +++  ++l++d+ +l
      CDO69681.1 250 EQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLaryMCTLEATKGDINSLADKVDAISNIWQCLRADMIKL 327
                     677788889999****************999988887776111567899***********************999776 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0047         2      43      93 ..      23      73 ..      15      80 .. 0.85
   2 ?    5.8   0.1     0.038        16      43      91 ..     126     174 ..     123     186 .. 0.80
   3 ?    1.9   0.1       0.6   2.5e+02      37      61 ..     187     211 ..     175     219 .. 0.54
   4 ?    7.3   3.5     0.013       5.3      34      94 ..     254     314 ..     246     335 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0047
                  HHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 43 veleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkel 93
                  +e  + ++   e+s   + a ++ e +++ i +v++l++++k++++  +++
    CDO69681.1 23 QESLKKRETAEEISDRLAAAFESSEVTDATITSVRDLSKKVKDIKEMFTKI 73
                  5555667777899999999**999********************9988776 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.038
                   HHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  43 veleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelk 91 
                   ve ++ qa r el+  ++++k+k +da++ + e   l  +l + +a l+
    CDO69681.1 126 VESDARQALREELQGFVAQLKQKADDASRAKGEFGRLAIDLRNFTAVLE 174
                   5778889999999999999999999999999999988888887777665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.6
                   HHHHHHHHHHHHHHHHHHHHHHCCC CS
  Seryl_tRNA_N  37 krrelqveleelqaerNelskeIgk 61 
                     ++++++le l+ + +e++ +I++
    CDO69681.1 187 DLQATRTKLEGLRVQLKEVTDKIQS 211
                   3344444555555555555554444 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.013
                   HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  34 ldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkele 94 
                   l ++  +++++ ++l++e N l ++ + + +k+e  ++ +   ++ k +++ l +++++++
    CDO69681.1 254 LRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLADKVDAIS 314
                   3444555666666666666666666666666667777777777777777777777776665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       8.3   3.5e+03      16      37 ..      27      48 ..      18      74 .. 0.43
   2 !    9.8   0.1    0.0027       1.1       1      71 [.     113     210 ..     113     219 .. 0.64
   3 !   11.8   2.7   0.00065      0.27      61     102 ..     249     290 ..     237     315 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 8.3
      APG6_N 16 kqleqaekerdaYeeflkklkk 37
                k+ e+ae+  d + +  +  + 
  CDO69681.1 27 KKRETAEEISDRLAAAFESSEV 48
                3333333333333333333332 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0027
      APG6_N   1 PlCeeCtdlLleeldkqleqaekerdaYeeflkklkkekkeeek.............................qdeeleeleeeleklekeeeelleeL 70 
                 P+C+e t ++l+ +++  +qa +  ++++ f ++lk++++++++                               ++l++++ +le l+ + +e   ++
  CDO69681.1 113 PICVEYTGIILTDVESDARQALR--EELQGFVAQLKQKADDASRakgefgrlaidlrnftavlegifkkanvrLATDLQATRTKLEGLRVQLKEVTDKI 209
                 99999999999999998888776..5899*******998887667888888777777776666666444444433333333333333333333333333 PP

      APG6_N  71 k 71 
                 +
  CDO69681.1 210 Q 210
                 3 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00065
      APG6_N  61 keeeelleeLkelekereeleaelaaleeelealeeeeerfw 102
                  e+e+l +e++++++++ +l+ e++ le++l++l ++ee   
  CDO69681.1 249 HEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLA 290
                 566667777777777777777777777777777666666444 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.048        20      44      66 ..      49      71 ..       9      83 .. 0.76
   2 ?    0.6   0.0       1.9     8e+02      22      51 ..     137     166 ..     121     181 .. 0.56
   3 ?    5.2   0.2     0.073        30      36      62 ..     187     213 ..     178     217 .. 0.71
   4 !    8.3   1.7    0.0076       3.2      15      65 ..     267     317 ..     252     340 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.048
     NPV_P10 44 LdaqsaqLaeletkvenIqdiLn 66
                 da  +++ +l++kv++I+++ +
  CDO69681.1 49 TDATITSVRDLSKKVKDIKEMFT 71
                46666677777777777777766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.9
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqL 51 
                  lq  v++++++  d +  + ++ +++  L
  CDO69681.1 137 ELQGFVAQLKQKADDASRAKGEFGRLAIDL 166
                 456666666666666555555555555555 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.073
     NPV_P10  36 dvtelnekLdaqsaqLaeletkvenIq 62 
                 d++   +kL+++  qL+e+ +k+++ +
  CDO69681.1 187 DLQATRTKLEGLRVQLKEVTDKIQSMS 213
                 344456788888888888888877654 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0076
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiL 65 
                  +++ +++l++q++d+ ++ + +      L+a    +++l +kv++I++i 
  CDO69681.1 267 SLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLADKVDAISNIW 317
                 455666666666666666666666667789999999999999999999985 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       5.2   2.2e+03      31      52 ..      27      48 ..       9      84 .. 0.47
   2 ?    3.1   0.4      0.13        53      91     163 ..     134     210 ..     122     220 .. 0.49
   3 ?   13.4   0.0   9.8e-05     0.041      48     134 ..     242     328 ..     228     337 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.2
   Golgin_A5 31 kegsgeeglesstalsaeldel 52
                k+ +++e+++ + a++ e +e+
  CDO69681.1 27 KKRETAEEISDRLAAAFESSEV 48
                3222222222222222222222 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
   Golgin_A5  91 lreqlqeleeqleeerkakeeveaelerlkeelryle...ee.lvrskatlqsrikdrekeieklrnqlttkslsss 163
                 lre+lq +  ql+++     +++ e  rl  +lr      e   +++ + l + ++   +++e lr ql+  + +  
  CDO69681.1 134 LREELQGFVAQLKQKADDASRAKGEFGRLAIDLRNFTavlEGiFKKANVRLATDLQATRTKLEGLRVQLKEVTDKIQ 210
                 45555555555555555555555555555555543320002202334445555556666666666666655544332 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 9.8e-05
   Golgin_A5  48 eldel.kqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrsk 134
                 +l e+ ++e+++lr+e+ k++q+ ++l+te++ leaq  a+    +e l+++  +le+ +   +++ +++  +++  + l+ ++++  
  CDO69681.1 242 ALKEVfTHEQETLRNEIDKAKQKENSLKTEINVLEAQL-ADLLAKEELLARYMCTLEATKGDINSLADKVDAISNIWQCLRADMIKLD 328
                 55555599***************************998.7777778888888888888888888888888877777777777777655 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.1   3.4e+03      20      57 ..      32      69 ..      21      80 .. 0.60
   2 ?   12.7   0.2    0.0002     0.085       2      61 ..     254     314 ..     253     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.1
  USP8_interact 20 vaeqkqqlseqkrelellkeyiralrstnpvlraladq 57
                   ++e + +l+   +  e+  ++i+++r  +++++ +++ 
     CDO69681.1 32 AEEISDRLAAAFESSEVTDATITSVRDLSKKVKDIKEM 69
                   44445555555555666666666666666666666554 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.0002
  USP8_interact   2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstnpvlraladqler.d 61 
                    Lr+ ++k +qk ++lk+e++  + ql++   + ell +y+ +l +t++ +++lad+++  +
     CDO69681.1 254 LRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLADKVDAiS 314
                    99*****************************************************998634 PP

>> DUF2383  Domain of unknown function (DUF2383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.7     7e+02      36      85 ..      21      73 ..      13      85 .. 0.60
   2 ?    9.8   0.0    0.0024      0.99      41      80 ..     129     168 ..     123     174 .. 0.90
   3 ?   -1.2   0.0         6   2.5e+03      74      88 ..     239     253 ..     225     273 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.7
                HHHHHHHHHHHHHHHHHHHHHCT.-----------..---------------- CS
     DUF2383 36 leriaeereeaaeeLqseiralg.gepedggslag..klhrawvdlksaltsn 85
                l + + +++e+aee++++++a    +  ++ ++++  +l + + d+k ++t+ 
  CDO69681.1 21 LIQESLKKRETAEEISDRLAAAFeSSEVTDATITSvrDLSKKVKDIKEMFTKI 73
                55666677777777777766544133334444443235666666666666654 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHHHHHHCT---------------------- CS
     DUF2383  41 eereeaaeeLqseiralggepedggslagklhrawvdlks 80 
                 ++r++  eeLq ++++l+++++d +  +g++ r  +dl+ 
  CDO69681.1 129 DARQALREELQGFVAQLKQKADDASRAKGEFGRLAIDLRN 168
                 67888899*****************************996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 6
                 -------------HH CS
     DUF2383  74 awvdlksaltsndee 88 
                  w++lk ++t+++e 
  CDO69681.1 239 IWTALKEVFTHEQET 253
                 466666666655543 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       2.8   1.2e+03      38      74 ..      38      72 ..      23      79 .. 0.64
   2 ?    5.3   0.4     0.061        26      32      83 ..     162     213 ..     132     217 .. 0.70
   3 ?   12.4   0.9   0.00038      0.16       9      84 ..     245     322 ..     239     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 2.8
  Snapin_Pallidin 38 rlnekLkeleeaqeaevlpdlkeyakKLvnikkrmss 74
                     rl+++++  +e+++ ++++ ++   kK++ ik   ++
       CDO69681.1 38 RLAAAFE-SSEVTD-ATITSVRDLSKKVKDIKEMFTK 72
                     5555554.444444.4666666666777666665554 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.061
  Snapin_Pallidin  32 LleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklk 83 
                      L+ +l++ ++ L+ + + ++  + +dl+  + KL  ++ +++++ +++q++ 
       CDO69681.1 162 LAIDLRNFTAVLEGIFKKANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMS 213
                      5556666666666666666656678888888888888888888888888876 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00038
  Snapin_Pallidin   9 ellepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe..aevlpdlkeyakKLvnikkrmsslnerlqklkk 84 
                      e++  + ++l++++ + +q+ + L+ +++ l ++L++l   +e  a ++ +l+  +  ++++  ++ +++++ q l++
       CDO69681.1 245 EVFTHEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEEllARYMCTLEATKGDINSLADKVDAISNIWQCLRA 322
                      566666678999**************************9999988889999999999999999999999988887665 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       1.2     5e+02      86     131 ..      17      68 ..       4     105 .. 0.66
   2 ?    6.0   1.2     0.019       7.7      47     132 ..     129     215 ..     123     219 .. 0.82
   3 ?   11.0   0.2   0.00055      0.23      47      94 ..     242     289 ..     235     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.2
                 XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXX.XXXXXXXXXXX CS
    Filament  86 dlrkkyekelnkreevEaelkalr.....kdldeatlarv.dLekkvesLke 131
                  +   +++ l+kre++E+    l       ++ +at++ v dL kkv+ +ke
  CDO69681.1  17 PFAILIQESLKKRETAEEISDRLAaafesSEVTDATITSVrDLSKKVKDIKE 68 
                 5555555566666666665555555555545555555443366666666655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.019
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  47 klkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkre.evEaelkalrkdldeatlarvdLekkvesLkee 132
                   +++  +el+   +ql++ + + +r++ e ++l+ +l+++ + +e   +k +  +  +l+a r +l+ + ++  ++  k++s+ e 
  CDO69681.1 129 DARQALREELQGFVAQLKQKADDASRAKGEFGRLAIDLRNFTAVLEGIFKKANvRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEA 215
                 556777889999999999999999999999999999999999999865544321567899999999999999999999999999885 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00055
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  47 klkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke 94 
                  lke++ +e e lr+++d+++++++ l+ e++ l+++l+dl +k e  
  CDO69681.1 242 ALKEVFTHEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELL 289
                 6899999********************************999987654 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       9.3   3.9e+03      15      33 ..      51      69 ..      49     110 .. 0.78
   2 ?    3.1   1.1      0.31   1.3e+02      45      65 ..     156     198 ..     129     214 .. 0.48
   3 ?   13.1   1.8   0.00024     0.099      21      53 ..     252     284 ..     248     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 9.3
        ZapB 15 kaidtitlLqmeieeLkee 33
                ++i+ ++ L++++++ ke 
  CDO69681.1 51 ATITSVRDLSKKVKDIKEM 69
                5677888888888888775 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.31
        ZapB  45 e......................eeneqlkeereawqerlkkL 65 
                 +                      + n +l ++ +a++ +l++L
  CDO69681.1 156 KgefgrlaidlrnftavlegifkKANVRLATDLQATRTKLEGL 198
                 1444455555556666666666544444444444444444444 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00024
        ZapB  21 tlLqmeieeLkeeneelkeenreleeeneqlke 53 
                 ++L++ei++ k++ ++lk e++ le+++  l +
  CDO69681.1 252 ETLRNEIDKAKQKENSLKTEINVLEAQLADLLA 284
                 79***********************88877754 PP

>> TRPM_tetra  Tetramerisation domain of TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       1.2     5e+02      11      36 ..      56      81 ..      49      82 .. 0.75
   2 ?    4.6   0.1     0.083        35       6      30 ..     190     214 ..     188     218 .. 0.87
   3 ?    8.7   0.9    0.0043       1.8      17      54 ..     257     297 ..     248     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.2
  TRPM_tetra 11 vEnmsmkveevneKenlikaSLqsld 36
                v ++s kv++++e    i +S  + d
  CDO69681.1 56 VRDLSKKVKDIKEMFTKIGQSFVEFD 81
                56678899999988888877777665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.083
  TRPM_tetra   6 vttERvEnmsmkveevneKenlika 30 
                 +t  + E + ++++ev +K +++ +
  CDO69681.1 190 ATRTKLEGLRVQLKEVTDKIQSMSE 214
                 6778999************999875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0043
  TRPM_tetra  17 kveevneKenlikaSLqsldfrLgkL...edlsaltvdtLk 54 
                  ++  ++Ken+ k+ +  l+ +L+ L   e+l a+ + tL+
  CDO69681.1 257 EIDKAKQKENSLKTEINVLEAQLADLlakEELLARYMCTLE 297
                 567778******************99899999999999987 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       5.1   2.1e+03     214     226 ..      54      66 ..      19      79 .. 0.45
   2 ?    2.7   0.1      0.17        70      69     102 ..     185     214 ..     165     217 .. 0.71
   3 ?   10.4   0.3   0.00073      0.31     185     223 ..     248     286 ..     235     295 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.1
     DUF4618 214 aeveqLqaqaeep 226
                  +v +L+++++++
  CDO69681.1  54 TSVRDLSKKVKDI 66 
                 2222222222222 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
     DUF4618  69 kaeLqeweekeekklekLeqqleqlnakvqklqe 102
                   +L    + +  kle L+ ql+++++k+q+++e
  CDO69681.1 185 ATDL----QATRTKLEGLRVQLKEVTDKIQSMSE 214
                 3333....45567889999999999999999876 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00073
     DUF4618 185 tlenqvlkkeiekfrefieeleeeipeLkaeveqLqaqa 223
                 t e+++l++ei+k +++ + l+ ei+ L+a++ +L a+ 
  CDO69681.1 248 THEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKE 286
                 3445567899*********************99997765 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4     0.012         5      37      81 ..      29      76 ..       2      94 .. 0.66
   2 ?   -1.8   0.0       7.1     3e+03      18      36 ..     137     155 ..     125     181 .. 0.52
   3 ?    9.0   0.1    0.0033       1.4      21      57 ..     183     219 ..     172     221 .. 0.91
   4 ?    2.5   2.3      0.33   1.4e+02      22      57 ..     254     289 ..     241     317 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
                XXXXXXXXXXXX...XXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
  Laminin_II 37 nrsveetnekvk...dankairdArrsvkkLeklapqLldklkelkql 81
                ++++ee+ + +    +++++++   +sv++L k++ ++ + + ++ q 
  CDO69681.1 29 RETAEEISDRLAaafESSEVTDATITSVRDLSKKVKDIKEMFTKIGQS 76
                223355555544444778888888899999999999998888887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 7.1
                 XXXXXXXXXXXXXXXXXXX CS
  Laminin_II  18 qlaplsqnlentkeklsei 36 
                  l++  ++l++  +++s++
  CDO69681.1 137 ELQGFVAQLKQKADDASRA 155
                 3333333333333333333 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  21 plsqnlentkeklseinrsveetnekvkdankairdA 57 
                  l+++l+ t+ kl++++ +++e+++k++++++a ++A
  CDO69681.1 183 RLATDLQATRTKLEGLRVQLKEVTDKIQSMSEACVEA 219
                 57899**************************998876 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.33
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  22 lsqnlentkeklseinrsveetnekvkdankairdA 57 
                 l +++++ k+k ++++++++  ++++ d+    ++ 
  CDO69681.1 254 LRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELL 289
                 344444444444444444444444444443333333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.035        15      61     112 ..      28      79 ..      10      84 .. 0.76
   2 ?    5.8   0.2     0.032        13      21     114 ..     116     213 ..     113     219 .. 0.68
   3 ?    4.8   1.5     0.065        27      53     110 ..     254     317 ..     242     336 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.035
     DUF1664  61 krhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 kr+ +++i    +   e++e++ ++   v ++++++++i+e ++++ + + +
  CDO69681.1  28 KRETAEEISDRLAAAFESSEVTDATITSVRDLSKKVKDIKEMFTKIGQSFVE 79 
                 5566666654444555678888999999999999999999999998776655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.032
     DUF1664  21 vwwkGwklsdlmfvTkrslsdavesvskqleqvseslaatkrhLss...ridrvdkkldeq.keiskeikeevtevredlseigedvesvkeavegle 114
                 v + G+ l+d+    ++ l++ ++    ql+q  ++ +++k ++ +   ++ +  + l+   k++   ++ ++++ r +l+ ++ ++++v + ++++ 
  CDO69681.1 116 VEYTGIILTDVESDARQALREELQGFVAQLKQKADDASRAKGEFGRlaiDLRNFTAVLEGIfKKANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMS 213
                 67788888888888899999999999999999998888888765431115566666666541445556666777777777777777777777666664 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.065
     DUF1664  53 vseslaatkr...hLssridrvdkkldeqke...iskeikeevtevredlseigedvesvkeav 110
                 + +++ ++k+    L+ +i+ ++++l +  +   + +     +++ ++d++++ ++v++++++ 
  CDO69681.1 254 LRNEIDKAKQkenSLKTEINVLEAQLADLLAkeeLLARYMCTLEATKGDINSLADKVDAISNIW 317
                 3333333332111355555555555544333000222333334444445555555555555444 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       1.9   7.9e+02      17      54 ..      53      92 ..      25      97 .. 0.73
   2 ?    5.9   0.0     0.036        15       4      41 ..     179     216 ..     177     227 .. 0.82
   3 ?    7.2   0.7     0.014       5.8      14      44 ..     252     284 ..     242     333 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.9
       Spc24 17 eselesleselaelkeeleeleeesee.keserve.detl 54
                 +++ +l+++ ++ ke+++++ ++ +e ++++  + ++++
  CDO69681.1 53 ITSVRDLSKKVKDIKEMFTKIGQSFVEfDNANFLDdKNNV 92
                4567788888889999888888888887555555535555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.036
       Spc24   4 nekfriakelsdleselesleselaelkeeleeleees 41 
                 + ++r+a +l+ + ++le l+ +l+e  ++++ ++e  
  CDO69681.1 179 KANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEAC 216
                 56788999999999999999999999999998888765 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.014
       Spc24  14 sdleselesleselaelkeeleeleeesee..k 44 
                 + l +e+++ +++ ++lk+e++ le +  +   
  CDO69681.1 252 ETLRNEIDKAKQKENSLKTEINVLEAQLADllA 284
                 556666666666666666666666666555431 PP

>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.014       5.7      19      62 ..      19      60 ..      14      62 .. 0.79
   2 ?   -0.1   0.1       2.8   1.2e+03      47      64 ..     131     148 ..     121     149 .. 0.78
   3 ?    0.6   0.0       1.8   7.4e+02      33      55 ..     237     259 ..     233     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.014
                HHHHHHH-SSSS-HHHHHHHHHHHCT--HHHHHHHHHHHHHHHH CS
        PqqD 19 gafiWklldgersveeivaalaeeydvdeeeaeadvlafldqLr 62
                + +i ++l ++ + eei ++la+ ++ +e  + ++++  +++L 
  CDO69681.1 19 AILIQESLKKRETAEEISDRLAAAFESSE--VTDATITSVRDLS 60
                6678899999999************9986..7777776666665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHCT CS
        PqqD  47 eeeaeadvlafldqLrek 64 
                 ++ +++ ++ f++qL++k
  CDO69681.1 131 RQALREELQGFVAQLKQK 148
                 57799999*******987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.8
                 HHHHHHHHHHCT--HHHHHHHHH CS
        PqqD  33 eeivaalaeeydvdeeeaeadvl 55 
                 ++i +al+e +  ++e++++ ++
  CDO69681.1 237 RAIWTALKEVFTHEQETLRNEID 259
                 78999******9999****9987 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       2.4     1e+03      38      54 ..      54      70 ..       6      97 .. 0.62
   2 ?    5.9   0.1      0.03        12      18      59 ..     169     214 ..     122     228 .. 0.60
   3 ?   12.1   1.5   0.00035      0.15      18     113 ..     169     284 ..     163     288 .. 0.81
   4 ?    5.2   3.1      0.05        21      52     101 ..     259     310 ..     237     337 .. 0.40

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.4
  Baculo_PEP_C 38 tlldaietqLnalsedl 54
                  t + ++ +++++++e +
    CDO69681.1 54 TSVRDLSKKVKDIKEMF 70
                  22222222233222222 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.03
  Baculo_PEP_C  18 LtnvLnai.rlqnvqilaqlatlldaiet...qLnalsedlkslla 59 
                   +t vL+ i +  nv ++++l+++ +++e+   qL++++++++s+++
    CDO69681.1 169 FTAVLEGIfKKANVRLATDLQATRTKLEGlrvQLKEVTDKIQSMSE 214
                   3555555533445555555554444433322255555555555444 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00035
  Baculo_PEP_C  18 LtnvLnai.rlqnvqilaqlatlldaiet...qLnalsedlksllaeldt................rldtlltnLtdalnalqdtlrneLtnlnsil 94 
                   +t vL+ i +  nv ++++l+++ +++e+   qL++++++++s++++  +                   +  t+L++   + q+tlrne++  +++ 
    CDO69681.1 169 FTAVLEGIfKKANVRLATDLQATRTKLEGlrvQLKEVTDKIQSMSEACVEafavggssaggffarlSPRAIWTALKEVFTHEQETLRNEIDKAKQKE 265
                   57788887566788888888877666654444899999999998887777899*******99994434567788999999999************** PP

  Baculo_PEP_C  95 tnLlssvtNinstLnnllq 113
                   ++L +++  +++ L+ ll+
    CDO69681.1 266 NSLKTEINVLEAQLADLLA 284
                   *******999999999986 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.05
  Baculo_PEP_C  52 edlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltnLlssv 101
                   ++ k+  ++l+t+++ l ++L d l++ +        L++++ ++++L+ +v
    CDO69681.1 259 DKAKQKENSLKTEINVLEAQLADLLAKEEllARYMCTLEATKGDINSLADKV 310
                   3333333333333333333333333322222333333444444444444333 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       5.6   2.3e+03      72      89 ..      30      47 ..       3      71 .. 0.55
   2 ?    3.5   3.0      0.24        99      65      92 ..     179     213 ..     116     216 .. 0.78
   3 ?   11.3   0.2   0.00087      0.36      60      96 ..     244     280 ..     229     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 5.6
     DUF4140 72 aeleeledelaaledela 89
                ++ ee+ d+laa+ ++ +
  CDO69681.1 30 ETAEEISDRLAAAFESSE 47
                333333333333333333 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.24
     DUF4140  65 e.......elkalraeleeledelaaledelaaae 92 
                 +       +l+a+r +le l+ +l++++d++++ +
  CDO69681.1 179 KanvrlatDLQATRTKLEGLRVQLKEVTDKIQSMS 213
                 13444443599999999999999999999999875 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00087
     DUF4140  60 reaeeeelkalraeleeledelaaledelaaaearla 96 
                 +e +++e ++lr+e+++++++ + l+ e++++ea+la
  CDO69681.1 244 KEVFTHEQETLRNEIDKAKQKENSLKTEINVLEAQLA 280
                 566777899**************************96 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.44   1.8e+02      50      77 ..      46      73 ..       4      84 .. 0.58
   2 ?   -1.4   0.0       7.4   3.1e+03      38      59 ..     137     158 ..     130     181 .. 0.61
   3 ?    3.1   0.1      0.28   1.2e+02       9      41 ..     182     214 ..     174     219 .. 0.56
   4 ?   10.2   2.6    0.0018      0.73      19      88 ..     248     317 ..     241     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.44
     BLOC1_2 50 leklnekyeelqpylqqidqiekqvteL 77
                +e ++++  +++ + +++++i++  t++
  CDO69681.1 46 SEVTDATITSVRDLSKKVKDIKEMFTKI 73
                3334444444444444444444433333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 7.4
     BLOC1_2  38 klkdvaaslekkleklnekyee 59 
                 +l+  +a+l++k+++ ++ + e
  CDO69681.1 137 ELQGFVAQLKQKADDASRAKGE 158
                 3444455555555555444444 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.28
     BLOC1_2   9 kyleaeleatvedyklLeklNeaasekykklkd 41 
                   l  +l+at+++++ L    ++++ k++++++
  CDO69681.1 182 VRLATDLQATRTKLEGLRVQLKEVTDKIQSMSE 214
                 445555555555555555555555555555555 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.0018
     BLOC1_2  19 vedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeys 88 
                 + + ++L +   +a +k ++lk++++ le++l +l +k+e l+ y+  +++ + ++++L + v+++ ++ 
  CDO69681.1 248 THEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLADKVDAISNIW 317
                 56777888888899999999***************************************99999887665 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.2   1.7e+03      89      89 ..      55      55 ..      18      80 .. 0.49
   2 ?    8.6   4.8    0.0032       1.3      76     130 ..     244     298 ..     125     313 .. 0.81
   3 ?   -0.6   0.0       2.1   8.8e+02      77     118 ..     297     338 ..     295     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.2
  PI3K_P85_iSH2 89 n 89
                   +
     CDO69681.1 55 S 55
                   2 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0032
  PI3K_P85_iSH2  76 keaqehEieklqenleqlksrlkelhsskekLeedlkqqkeeereleReinalkp 130
                    ke+  hE+e+l + ++++k++ ++l+ + + Le +l    ++e +l R +++l  
     CDO69681.1 244 KEVFTHEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEA 298
                    44459*******************************************9998754 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.1
  PI3K_P85_iSH2  77 eaqehEieklqenleqlksrlkelhsskekLeedlkqqkeee 118
                    ea + +i++l + ++ + +  + l++ + kL+ +l ++++ +
     CDO69681.1 297 EATKGDINSLADKVDAISNIWQCLRADMIKLDTALSNTVDPN 338
                    5667789999999999999999999*******9999998766 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       2.3   9.5e+02      23      37 ..      56      70 ..      44      77 .. 0.69
   2 ?    7.1   0.1     0.017         7       7      35 ..     186     214 ..     183     218 .. 0.87
   3 ?    3.3   0.8      0.26   1.1e+02      12      41 ..     254     283 ..     249     291 .. 0.73
   4 ?    0.2   0.0       2.5     1e+03      11      34 ..     291     314 ..     285     337 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 2.3
   FlaC_arch 23 neelsksveelkenV 37
                  +lsk+v+++ke +
  CDO69681.1 56 VRDLSKKVKDIKEMF 70
                345677777777654 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.017
   FlaC_arch   7 nklsklsteletvkkeneelsksveelke 35 
                 ++l+ + t+le ++ +++e+ ++++ + e
  CDO69681.1 186 TDLQATRTKLEGLRVQLKEVTDKIQSMSE 214
                 67889999****************99987 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.26
   FlaC_arch  12 lsteletvkkeneelsksveelkenVkdll 41 
                 l  e++ +k++ ++l+++++ l+ +  dll
  CDO69681.1 254 LRNEIDKAKQKENSLKTEINVLEAQLADLL 283
                 555777777777777777777777777776 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 2.5
   FlaC_arch  11 klsteletvkkeneelsksveelk 34 
                 +   +le  k ++++l ++v+ + 
  CDO69681.1 291 RYMCTLEATKGDINSLADKVDAIS 314
                 555678888888888888888875 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1         4   1.7e+03      45      69 ..      42      66 ..       6      98 .. 0.57
   2 ?    0.1   0.1       3.8   1.6e+03      10      38 ..     128     156 ..     123     174 .. 0.76
   3 ?    5.5   0.3     0.077        32      10      45 ..     178     212 ..     168     222 .. 0.82
   4 ?   10.1   0.3    0.0028       1.2      10      43 ..     248     281 ..     240     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 4
  PRKG1_interact 45 vskrssllelekrerrslerkisel 69
                      ++s+++++  ++ r l +k++++
      CDO69681.1 42 AFESSEVTDATITSVRDLSKKVKDI 66
                    2233333333333333333333333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 3.8
  PRKG1_interact  10 keenerLkreLeelekelselkseleklk 38 
                      + ++ L++eL+    +l++     +++k
      CDO69681.1 128 SDARQALREELQGFVAQLKQKADDASRAK 156
                     55677888888888888888777666655 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.077
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqesv 45 
                     k+ n rL + L+ ++ +l+ l+ +l++++ +  +s+
      CDO69681.1 178 KKANVRLATDLQATRTKLEGLRVQLKEVTDK-IQSM 212
                     678999********************99955.3333 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.0028
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqe 43 
                      +e+e+L++e+++++++ ++lk+e++ l+ q  +
      CDO69681.1 248 THEQETLRNEIDKAKQKENSLKTEINVLEAQLAD 281
                     6899*********************999877444 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.9   7.8e+02     159     186 ..      33      60 ..      17      88 .. 0.54
   2 ?   -2.0   0.0       4.4   1.8e+03      66      85 ..     138     157 ..     130     176 .. 0.58
   3 ?    6.5   0.3     0.011       4.6      53      89 ..     178     214 ..     173     218 .. 0.90
   4 ?    8.2   1.4    0.0035       1.5      43      98 ..     252     307 ..     242     330 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
         GAS 159 Ekkeaqleevlaaanldpaalsavsekl 186
                 E+   +l+++ +++++ +a++++v+   
  CDO69681.1  33 EEISDRLAAAFESSEVTDATITSVRDLS 60 
                 3333444444444444444444333322 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.4
         GAS  66 aeeeveeLrkqlknyekdkq 85 
                 ++  v++L++++ + ++ k 
  CDO69681.1 138 LQGFVAQLKQKADDASRAKG 157
                 33344555555555555554 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.011
         GAS  53 sqenkrlkepLkkaeeeveeLrkqlknyekdkqslkn 89 
                 ++ n rl   L++ + ++e Lr qlk+   + qs+ +
  CDO69681.1 178 KKANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMSE 214
                 67899**********************9999988875 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0035
         GAS  43 ernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkele 98 
                 e  ++e+++++q+ ++lk +++ +e++++ L ++ +   +    l+++k  +++l 
  CDO69681.1 252 ETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLA 307
                 44444555555555555555555555555554444444444444444444444444 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.73   3.1e+02     161     207 ..      27      73 ..      14     103 .. 0.59
   2 ?    1.0   0.3       0.6   2.5e+02     139     208 ..     135     206 ..     122     219 .. 0.40
   3 ?   13.3   1.4    0.0001     0.044     129     241 ..     252     368 ..     242     372 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.73
     Leu_zip 161 eeksklekalkelqkelgekkdekenskeiskleeklaelkldlekt 207
                 ++++  e+  ++l ++ ++++ + ++ +++ +l++k++++k  ++k 
  CDO69681.1  27 KKRETAEEISDRLAAAFESSEVTDATITSVRDLSKKVKDIKEMFTKI 73 
                 44444433333344444444444445566666666666666655553 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.6
     Leu_zip 139 keenekLkerlkelEkqatsaleeksklekalkelqkelgek..kdekenskeiskleeklaelkldlektl 208
                 +ee +   ++lk+  + a +a  e  +l+ +l++  + l+    k++ + +++++  ++kl+ l+++l++ +
  CDO69681.1 135 REELQGFVAQLKQKADDASRAKGEFGRLAIDLRNFTAVLEGIfkKANVRLATDLQATRTKLEGLRVQLKEVT 206
                 333333333333333333344444444444444443333332101111233334444444444444443333 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.0001
     Leu_zip 129 eLLkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdekenskeisk....leeklaelkldlektleektasaksleedla 223
                 e L++ei++ k++ + Lk+ ++ lE+q+ ++l +++ l++ +  l+++ g+ ++ +++   is+    l++ + +l + l++t++ +   +  +++ + 
  CDO69681.1 252 ETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLADKVDAISNiwqcLRADMIKLDTALSNTVDPNMPLTYFFMKKIR 350
                 7799***********************************999999999998888777776666611124556666666666677767777777788888 PP

     Leu_zip 224 stkhelLkvqeqLelaek 241
                  t+  ++++   Le+  k
  CDO69681.1 351 ATRALYMNIAYALEMYAK 368
                 888888888888888666 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       9.5     4e+03      18      39 ..      55      76 ..      40      93 .. 0.67
   2 ?    0.3   0.1       1.7   7.1e+02      50      72 ..     130     152 ..     124     158 .. 0.71
   3 ?    2.3   0.1      0.38   1.6e+02      14      38 ..     190     214 ..     183     219 .. 0.82
   4 ?    9.2   0.7    0.0027       1.1      44      68 ..     258     282 ..     241     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 9.5
        FlxA 18 qiasLqkQiknlqkqLkelses 39
                 ++ L k +k++++   ++++s
  CDO69681.1 55 SVRDLSKKVKDIKEMFTKIGQS 76
                4455666666666666666655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.7
        FlxA  50 qqqliqaQIqqlqaQIaqlqqqq 72 
                  +q + +++q   aQ++q+  ++
  CDO69681.1 130 ARQALREELQGFVAQLKQKADDA 152
                 57888888888888888875554 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.38
        FlxA  14 gsasqiasLqkQiknlqkqLkelse 38 
                  + ++++ L+ Q+k+++++++++se
  CDO69681.1 190 ATRTKLEGLRVQLKEVTDKIQSMSE 214
                 5667888999999999999999987 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0027
        FlxA  44 keekkkqqqliqaQIqqlqaQIaql 68 
                  +  k++++ ++++I++l+aQ+a l
  CDO69681.1 258 IDKAKQKENSLKTEINVLEAQLADL 282
                 455679999*************976 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       8.8   3.7e+03      83      83 ..      57      57 ..      21      81 .. 0.54
   2 ?    0.0   0.2         2   8.5e+02      11      29 ..      78      96 ..      41     108 .. 0.74
   3 ?   -0.1   0.0       2.2   9.2e+02      87     118 ..     133     162 ..     123     177 .. 0.50
   4 ?    8.7   0.1    0.0041       1.7      58      92 ..     182     216 ..     178     221 .. 0.90
   5 ?    2.5   0.4      0.35   1.5e+02      75     118 ..     248     291 ..     241     327 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.8
        COG2 83 k 83
                +
  CDO69681.1 57 R 57
                1 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 2
        COG2 11 pdFdpdqFvselrhgvpLe 29
                 +Fd ++F+ + ++  +L 
  CDO69681.1 78 VEFDNANFLDDKNNVIQLG 96
                4788888888877777765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.2
        COG2  87 svreklsereeeveskleeakeleekrellkl 118
                 ++re+l+   +++++k ++a++++   e+ +l
  CDO69681.1 133 ALREELQGFVAQLKQKADDASRAKG--EFGRL 162
                 3344455555555555544444333..44444 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0041
        COG2  58 vslSghLvglqeeleevesplaaarkkvesvrekl 92 
                 v l + L+  +++le ++++l+++++k++s+ e+ 
  CDO69681.1 182 VRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEAC 216
                 78999*************************98876 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.35
        COG2  75 esplaaarkkvesvreklsereeeveskleeakeleekrellkl 118
                 +++ +++r++++++++k +  ++e++   ++ ++l +k+ell +
  CDO69681.1 248 THEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLAR 291
                 56666777777777777777666666666666666555544433 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   2.0      0.74   3.1e+02     131     155 ..     132     156 ..      19     208 .. 0.50
   2 ?    7.8   4.9    0.0096         4      34     103 ..     182     288 ..     132     338 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.74
        Fez1 131 eelkreverlraeLkeerqkkeeqa 155
                 ++l++e++   a+Lk++ +   + +
  CDO69681.1 132 QALREELQGFVAQLKQKADDASRAK 156
                 3333333333333333333322222 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0096
        Fez1  34 valkaqlrelrakleekeeeikeleesleektle...................................levcenelqrkkseaellrekvekleeelk 97 
                 v l ++l+ +r+kle    ++ke+ +++++ ++                                     e++ ne++++k++++ l+ +++ le++l+
  CDO69681.1 182 VRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEAcveafavggssaggffarlspraiwtalkevftheQETLRNEIDKAKQKENSLKTEINVLEAQLA 280
                 555666666666666666666666666666555566666667777777888888888888876666665666666666666666666666666666666 PP

        Fez1  98 el..reel 103
                 +l  +eel
  CDO69681.1 281 DLlaKEEL 288
                 65333333 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       9.5     4e+03      42      53 ..     131     142 ..     125     151 .. 0.69
   2 ?    0.5   0.1       1.7   7.2e+02      44      69 ..     183     208 ..     177     212 .. 0.79
   3 ?   12.2   2.1   0.00037      0.15      38      70 ..     247     279 ..     244     280 .. 0.94
   4 ?   -1.0   0.0       4.9     2e+03      19      55 ..     298     330 ..     284     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 9.5
    JIP_LZII  42 reiLreEleslq 53 
                 r++LreEl+   
  CDO69681.1 131 RQALREELQGFV 142
                 678888888654 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.7
    JIP_LZII  44 iLreEleslqkakerlesrikelEee 69 
                  L  +l+++++ +e l+ ++ke+ ++
  CDO69681.1 183 RLATDLQATRTKLEGLRVQLKEVTDK 208
                 67788899999999999999998765 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00037
    JIP_LZII  38 LtsereiLreEleslqkakerlesrikelEeel 70 
                  t e+e+Lr+E+++ ++  ++l+++i+ lE++l
  CDO69681.1 247 FTHEQETLRNEIDKAKQKENSLKTEINVLEAQL 279
                 589***************************987 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 4.9
    JIP_LZII  19 etknaLnvvkddLIarvdeLtsereiLreEleslqka 55 
                 +tk  +    + L  +vd +++  + Lr ++ +l +a
  CDO69681.1 298 ATKGDI----NSLADKVDAISNIWQCLRADMIKLDTA 330
                 555555....677888898888888888877776665 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.051        21      12      69 ..      15      72 ..       7      93 .. 0.82
   2 ?    0.2   0.1       2.2   9.2e+02      64      64 ..     153     153 ..      88     223 .. 0.63
   3 ?    3.3   0.4      0.23        97      28      65 ..     239     270 ..     231     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.051
  Retrotrans_gag 12 kswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtr 69
                     + +  l ++s ++ e+ +++++++ + f++se++d++ +  ++l+++ + ++e +t+
      CDO69681.1 15 VQPFAILIQESLKKRETAEEISDRLAAAFESSEVTDATITSVRDLSKKVKDIKEMFTK 72
                    5666667777788888889**************************9988888887665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2.2
  Retrotrans_gag  64 r 64 
                     +
      CDO69681.1 153 S 153
                     2 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.23
  Retrotrans_gag  28 sWkdlkkaflktflpserkdqleeelsslrQgtesvre 65 
                     +W+ lk++f +      ++++l++e+ + +Q+++s++ 
      CDO69681.1 239 IWTALKEVFTH------EQETLRNEIDKAKQKENSLKT 270
                     56655555554......445588888888888777764 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.5     0.057        24     101     139 ..     178     216 ..      45     222 .. 0.66
   2 ?    5.4   3.0     0.039        16      87     121 ..     248     282 ..     243     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.057
   Rootletin 101 rqaneaLtedlqkltkdwerlreeleqkekewreeeeaf 139
                 ++an +L +dlq +++++e lr +l++  ++ ++  ea+
  CDO69681.1 178 KKANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEAC 216
                 577888888888888888888888888888887777766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.039
   Rootletin  87 aqvnslLreqleearqaneaLtedlqkltkdwerl 121
                 +++ ++Lr+++++a+q+ ++L+++++ l++++  l
  CDO69681.1 248 THEQETLRNEIDKAKQKENSLKTEINVLEAQLADL 282
                 56789999999999999999999999999998865 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3    0.0011      0.45      41      83 ..      31      73 ..      22      90 .. 0.90
   2 ?    1.7   0.1      0.67   2.8e+02      11      74 ..     142     210 ..     127     226 .. 0.66
   3 ?   -1.6   0.3       7.2     3e+03      65      65 ..     274     274 ..     239     320 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0011
        SesA 41 tLedaksqlesskldedtesaikpvlesckekatkleeifekv 83
                t e++ ++l ++ ++++ + a  +++++ ++k++ ++e+f+k+
  CDO69681.1 31 TAEEISDRLAAAFESSEVTDATITSVRDLSKKVKDIKEMFTKI 73
                55789999999*******************************9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.67
        SesA  11 aiklydaikdikglpeaFrevgkrLplvqetLedaksqlesskldedtesa.....ikpvlesckekat 74 
                  ++l ++++d+++ + +F + +  L  + ++Le + ++++ + + + + +      ++  l+++ +k++
  CDO69681.1 142 VAQLKQKADDASRAKGEFGRLAIDLRNFTAVLEGIFKKANVRLATDLQATRtklegLRVQLKEVTDKIQ 210
                 566777788888888888888888888888887777776666555543332333344444444444444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 7.2
        SesA  65 v 65 
                 v
  CDO69681.1 274 V 274
                 2 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1       0.3   1.3e+02      10      46 ..      47      83 ..      39     104 .. 0.72
   2 ?    6.8   0.1     0.014       5.9      14      48 ..     183     217 ..     177     221 .. 0.89
   3 ?    2.7   2.0      0.25     1e+02      12      64 ..     251     303 ..     242     336 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.3
       Sec34 10 eecdelleqtdealeqLeeleekfksvsektsslhea 46
                e +d+ +++++++ +++++++e f+++ ++  ++++a
  CDO69681.1 47 EVTDATITSVRDLSKKVKDIKEMFTKIGQSFVEFDNA 83
                5566677788888888888888888888887777754 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
       Sec34  14 elleqtdealeqLeeleekfksvsektsslheace 48 
                 +l ++++++ ++Le l+ + k+v++k +s++eac 
  CDO69681.1 183 RLATDLQATRTKLEGLRVQLKEVTDKIQSMSEACV 217
                 6788999**************************96 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.25
       Sec34  12 cdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeei 64 
                  ++l +++d+a+++ ++l+++ +  +++  +l ++ e l +    le ++ +i
  CDO69681.1 251 QETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDI 303
                 44555566666666666666666666666665555555554444555544444 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3       0.4   1.7e+02     174     216 ..      32      76 ..       6     111 .. 0.48
   2 ?    3.2   0.1      0.13        55     164     250 ..     122     211 ..     114     228 .. 0.58
   3 ?    6.2   0.4     0.016       6.8     176     250 ..     238     312 ..     231     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.4
   Phage_GPO 174 geslferikallskkkksdd..arfadveeavelvAeevkelsek 216
                 +e++ +r+ a +++++ +d     + d+++ v+++ e ++++ ++
  CDO69681.1  32 AEEISDRLAAAFESSEVTDAtiTSVRDLSKKVKDIKEMFTKIGQS 76 
                 445555555555544444321111222222222222222222222 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.13
   Phage_GPO 164 efeeeeeeeegeslferikallskkkksddarfadveeavelvAeevkelsekveall.....aleaelaalkkeveklkaeleaLkekLsk 250
                  +++ e++++ ++l e+++ ++++ k++ d+  +  +    ++A  +++++  +e        +l+++l+a ++++e l+ +l+++++k+++
  CDO69681.1 122 ILTDVESDAR-QALREELQGFVAQLKQKADDA-SRAKGEFGRLAIDLRNFTAVLEGIFkkanvRLATDLQATRTKLEGLRVQLKEVTDKIQS 211
                 5666666666.888889988887765555433.33334445666655555555443321122455666666666666666666666666655 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.016
   Phage_GPO 176 slferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsk 250
                 ++ + +k+++++++++  +++ + ++  + + +e++ l+ ++++lla+e+ la    ++e +k ++++L +k+++
  CDO69681.1 238 AIWTALKEVFTHEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKEELLARYMCTLEATKGDINSLADKVDA 312
                 577899***********999*99999999999**********999999999999999999999999999999875 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       2.1   8.9e+02       9      24 ..      56      71 ..      51      78 .. 0.77
   2 ?    3.7   0.7       0.2        82      17      40 ..     132     155 ..     125     157 .. 0.89
   3 ?    1.1   0.0       1.3   5.4e+02      12      29 ..     198     215 ..     183     221 .. 0.59
   4 ?    1.9   0.9      0.71     3e+02       4      32 ..     253     281 ..     251     287 .. 0.80
   5 ?    5.1   0.0     0.074        31       8      30 ..     302     324 ..     296     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2.1
         LPP  9 VsqLkskvdqlssdvn 24
                V +L++kv+ +++  +
  CDO69681.1 56 VRDLSKKVKDIKEMFT 71
                7889999999887655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.2
         LPP  17 dqlssdvnsakaaaqaakeEAaRA 40 
                 ++l ++++   a++++  ++A+RA
  CDO69681.1 132 QALREELQGFVAQLKQKADDASRA 155
                 7899999****************9 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 1.3
         LPP  12 Lkskvdqlssdvnsakaa 29 
                 L  + ++++++++s+++a
  CDO69681.1 198 LRVQLKEVTDKIQSMSEA 215
                 344444444455555444 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.71
         LPP   4 eLssqVsqLkskvdqlssdvnsakaaaqa 32 
                  L +++ + k+k ++l+ ++n ++a++++
  CDO69681.1 253 TLRNEIDKAKQKENSLKTEINVLEAQLAD 281
                 57789999999999999999999988775 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.074
         LPP   8 qVsqLkskvdqlssdvnsakaaa 30 
                 ++++L +kvd++s+  + ++a++
  CDO69681.1 302 DINSLADKVDAISNIWQCLRADM 324
                 99***********9888887775 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2         7   2.9e+03      65      79 ..      55      69 ..      23      78 .. 0.52
   2 ?   11.8   0.4   0.00044      0.18      48      86 ..     177     215 ..     173     219 .. 0.92
   3 ?    2.8   1.1      0.28   1.2e+02      51      75 ..     257     281 ..     243     305 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 7
                CCCHCTSSSSHHHHC CS
       Sec2p 65 lleslqeqLkeLkev 79
                 +++l+++ k+ ke+
  CDO69681.1 55 SVRDLSKKVKDIKEM 69
                333444444555555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00044
                 HHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXX CS
       Sec2p  48 lekkneklkeqLkeketlleslqeqLkeLkevlekmeee 86 
                 ++k n +l + L+ ++t le l  qLke  +++++m+e 
  CDO69681.1 177 FKKANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEA 215
                 688999******************************985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.28
                 HHHHHHHHHTTHCHCCCHCTSSSSH CS
       Sec2p  51 kneklkeqLkeketlleslqeqLke 75 
                 + +k k++ +  +t ++ l++qL++
  CDO69681.1 257 EIDKAKQKENSLKTEINVLEAQLAD 281
                 3333333333333333333333333 PP

>> CRR7  Protein CHLORORESPIRATORY REDUCTION 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0         3   1.3e+03      24      60 ..      30      65 ..      14      84 .. 0.65
   2 ?   -0.4   0.0       3.9   1.6e+03      29      53 ..     169     193 ..     164     215 .. 0.78
   3 ?    2.7   0.1      0.41   1.7e+02      24      58 ..     234     268 ..     232     275 .. 0.86
   4 ?    5.0   0.1     0.082        34      21      71 ..     280     330 ..     271     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 3
                E-HHHHHHHHHHHHHH-TTTS-HHHHH---HHHHHHH CS
        CRR7 24 ltaeellekLkelLekeqdelprdlaklesleeqaqy 60
                 taee+ ++L + +e+ ++  ++ + ++++l+++++ 
  CDO69681.1 30 ETAEEISDRLAAAFES-SEVTDATITSVRDLSKKVKD 65
                4677777777777777.55555556666666555554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.9
                 HHHHHHHHHHH-TTTS-HHHHH--- CS
        CRR7  29 llekLkelLekeqdelprdlakles 53 
                  ++ L+ +++k + +l +dl++ ++
  CDO69681.1 169 FTAVLEGIFKKANVRLATDLQATRT 193
                 5678999999999999999998765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.41
                 E-HHHHHHHHHHHHHH-TTTS-HHHHH---HHHHH CS
        CRR7  24 ltaeellekLkelLekeqdelprdlaklesleeqa 58 
                 l+++ + + Lke++++eq++l ++++k ++ e+ +
  CDO69681.1 234 LSPRAIWTALKEVFTHEQETLRNEIDKAKQKENSL 268
                 577788899*****************999988765 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.082
                 SEEE-HHHHHHHHHHHHHH-TTTS-HHHHH---HHHHHHHHHHH---EEEE CS
        CRR7  21 EqfltaeellekLkelLekeqdelprdlaklesleeqaqyLldtaceLeig 71 
                   +l +eell++   +Le+++ ++ +  +k++ +++  q L  ++  L+++
  CDO69681.1 280 ADLLAKEELLARYMCTLEATKGDINSLADKVDAISNIWQCLRADMIKLDTA 330
                 56999***************************************9999986 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       5.9   2.5e+03      53      66 ..      55      68 ..      21      84 .. 0.48
   2 ?   -0.4   0.1       3.3   1.4e+03      55      78 ..     132     155 ..     123     171 .. 0.60
   3 ?   11.0   2.4   0.00097       0.4      15      95 ..     193     285 ..     176     312 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 5.9
  Uso1_p115_C 53 enkklekeleklra 66
                 ++  l+k+++++++
   CDO69681.1 55 SVRDLSKKVKDIKE 68
                 22333333333333 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.3
  Uso1_p115_C  55 kklekeleklraelkeekekekek 78 
                  ++l++el+   a+lk+ + +++ +
   CDO69681.1 132 QALREELQGFVAQLKQKADDASRA 155
                  444555555555555555444444 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00097
  Uso1_p115_C  15 deneklkaelqslskalesleqk..eakkaaesqakeleaenkklek.............eleklraelkeekekekekqkEldDLLlllgDleeK 95 
                  +  e l  +l++ +++++s+ ++  ea++   s a   +a+ +                 e+e+lr e++++k+ke+  ++E++ L   l+Dl +K
   CDO69681.1 193 TKLEGLRVQLKEVTDKIQSMSEAcvEAFAVGGSSAGGFFARLS---PraiwtalkevfthEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLAK 285
                  3344455566666666666666644333333333333333333...25557778888888****************98899999887777777555 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3       1.7   7.3e+02     107     122 ..      32      47 ..      19      93 .. 0.54
   2 ?    8.1   0.4    0.0064       2.7      39      79 ..     178     218 ..     142     252 .. 0.83
   3 ?    4.6   2.5     0.078        32      36      76 ..     252     295 ..     238     339 .. 0.46

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.7
       Mod_r 107 aeeeSealaeeflege 122
                 aee S++la  f ++e
  CDO69681.1  32 AEEISDRLAAAFESSE 47 
                 3344444444443211 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0064
       Mod_r  39 laeneslaeknlslepeleelrselqekleelkelekefee 79 
                  ++n++la +  + +++le lr +l+e  ++++++++++ e
  CDO69681.1 178 KKANVRLATDLQATRTKLEGLRVQLKEVTDKIQSMSEACVE 218
                 47899999999999*********************999876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.078
       Mod_r  36 eellaeneslaeknlslepeleelrselqeklee...lkeleke 76 
                 e l++e+ +  +k  sl++e++ l ++l++ l +   l++ +++
  CDO69681.1 252 ETLRNEIDKAKQKENSLKTEINVLEAQLADLLAKeelLARYMCT 295
                 33333332222222333333333333333333322223333333 PP

>> SSFA2_C  Sperm-specific antigen 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.92   3.8e+02     154     171 ..     130     147 ..     124     149 .. 0.86
   2 ?    8.3   0.7    0.0048         2     136     174 ..     246     284 ..     239     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.92
     SSFA2_C 154 LrnavreeLqeLelqLed 171
                  r+a reeLq    qL++
  CDO69681.1 130 ARQALREELQGFVAQLKQ 147
                 599********9999976 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0048
     SSFA2_C 136 vYkhlteeerleaeqLqsLrnavreeLqeLelqLedrLl 174
                 v+ h  e  r e+++ ++  n+ ++e+  Le qL d L 
  CDO69681.1 246 VFTHEQETLRNEIDKAKQKENSLKTEINVLEAQLADLLA 284
                 89999999**************************99553 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       2.6   1.1e+03      54      75 ..      48      69 ..      23      94 .. 0.54
   2 ?   -0.5   0.4       2.3   9.4e+02     116     165 ..     186     200 ..     128     218 .. 0.47
   3 ?   13.1   4.0   0.00015     0.064     110     190 ..     250     333 ..     242     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.6
    KASH_CCD 54 stQqalqkaklleeEleelkal 75
                +t  ++ + + l++ + ++k++
  CDO69681.1 48 VTDATITSVRDLSKKVKDIKEM 69
                3344444444444444444443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.3
    KASH_CCD 116 aekdelkkklkeLlkekaeLkkqlheleellaekealleektkqieeLkl 165
                 ++ ++                                     ++ e L++
  CDO69681.1 186 TDLQAT-----------------------------------RTKLEGLRV 200
                 222222...................................222233333 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00015
    KASH_CCD 110 enikllaekdelkkklkeLlkekaeLkkqlhel...eellaekealleektkqieeLkltieEyssiieeLraeksrLeeqlqq 190
                 e + l+ e+d+ k+k + L +e++ L  ql  l   eella    +le  + +i++L+  ++ +s i + Lra++ +L++ l++
  CDO69681.1 250 EQETLRNEIDKAKQKENSLKTEINVLEAQLADLlakEELLARYMCTLEATKGDINSLADKVDAISNIWQCLRADMIKLDTALSN 333
                 6677889999999999999999999999986543338999999999999999**************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1484  (0.0827709); expected 358.6 (0.02)
Passed bias filter:                      825  (0.0460148); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 2442.74
//
Query:       CDO69682.1  [L=373]
Description: hypothetical protein BN946_scf184851.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0059   16.8   1.1        2.4    8.5   0.3    2.8  2  Epsilon_antitox  Bacterial epsilon antitoxin
  ------ inclusion threshold ------
      0.018   15.0   1.8      0.092   12.8   0.0    2.3  2  NEMO             NF-kappa-B essential modulator NEMO
      0.023   14.9   0.0        0.2   11.9   0.0    2.4  2  PI_PP_I          Phosphoinositide phosphatase insertion domai
      0.053   13.5   1.8      0.098   12.7   1.8    1.5  1  Rootletin        Ciliary rootlet component, centrosome cohesi
      0.065   13.3   5.1       0.18   11.9   1.1    2.3  2  ApoLp-III        Apolipophorin-III precursor (apoLp-III)
      0.086   12.7   0.1        2.4    8.0   0.0    2.4  2  GP41             Retroviral envelope protein
       0.38   10.8   4.1       0.48   10.5   0.2    2.4  2  GldM_N           GldM N-terminal domain
        1.1    9.6   7.9         12    6.2   0.0    3.5  3  BLOC1_2          Biogenesis of lysosome-related organelles co


Domain annotation for each model (and alignments):
>> Epsilon_antitox  Bacterial epsilon antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3    0.0011       2.4      30      75 ..     206     252 ..     194     262 .. 0.88
   2 !    5.9   0.0    0.0067        15      49      80 ..     265     296 ..     258     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
  Epsilon_antitox  30 nheldkkdsrllevnllnqlk.lakevdlfdqsleelqavheywrsm 75 
                       he + k ++  e  l nql+ ++ e++lf q+      v ey r++
       CDO69682.1 206 SHEAEMKAAQDRETVLHNQLNhITAEMELFVQAQGTQAEVREYLRTV 252
                      69******************64899********999999****9986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0067
  Epsilon_antitox  49 lklakevdlfdqsleelqavheywrsmnrysk 80 
                      l++a+    + + +e+ q   +ywrs n  sk
       CDO69682.1 265 LEIAEVNADMSKLFEDPQLPAKYWRSSNAMSK 296
                      56666555677889999999*********999 PP

>> NEMO  NF-kappa-B essential modulator NEMO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-05     0.092      16      40 ..     159     183 ..     156     187 .. 0.90
   2 ?    0.2   1.0      0.34   7.5e+02      39      65 ..     238     264 ..     223     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
        NEMO  16 neLkealkqsNqalkeRlEeLsawq 40 
                 + L+e ++qs ++ k+R+Ee   ++
  CDO69682.1 159 QALREGIRQSANNCKQRYEEVHGFR 183
                 78*******************9987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.34
        NEMO  39 wqekqkeerefleeklrearellerls 65 
                  q  q e re+l + l++a +   +l+
  CDO69682.1 238 AQGTQAEVREYLRTVLEKAEKEESKLE 264
                 56678999********99988665555 PP

>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.5   1.1e+03      44      60 ..     215     231 ..     154     268 .. 0.62
   2 ?   11.9   0.0   8.7e-05       0.2      14      78 ..     286     350 ..     274     361 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.5
                 HHH-SSHHHHHHHHHCT CS
     PI_PP_I  44 kktslsLeedLnkiann 60 
                 +++ + L+++Ln+i+++
  CDO69682.1 215 QDRETVLHNQLNHITAE 231
                 33444455555555554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.7e-05
                 HHHHC--TT--SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHHH CS
     PI_PP_I  14 aYflnleskeaslkklkqdlnqfllkWeeikktslsLeedLnkiannktplPsWfnelskaqqel 78 
                  Y+ + +  ++ + +++ +l   +  W+ i +  +sL +dL+  ++ ++plP+ f +  +a +el
  CDO69682.1 286 KYWRSSNAMSKMAGSVAGKLDATTHIWQYILSDIVSLDTDLEVATESDAPLPQRFVRKIRATREL 350
                 689999999999999******************************99******997766666665 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   4.4e-05     0.098      55     138 ..     198     294 ..     156     333 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.4e-05
   Rootletin  55 l.............ssareleeeesadleealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeea 138
                               + a+ +e   +++l++++a++e   q   + a+v + Lr+ le+a+++  +L+ ++  +++d+++l e+ +   k wr+ + +
  CDO69682.1 198 AviekagcsheaemKAAQDRETVLHNQLNHITAEMELFVQAQGTQAEVREYLRTVLEKAEKEESKLELEIAEVNADMSKLFEDPQLPAKYWRSSNAM 294
                 0233333333222245677777777777888888887777888889*************************************99999999987764 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.051   1.1e+02       9      43 ..      38      71 ..      32      85 .. 0.79
   2 ?   11.9   1.1     8e-05      0.18       7     125 ..     161     278 ..     156     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.051
   ApoLp-III  9 ksvkkqlnlpsqeevvetiKensenlvdqlkqvik 43
                + +++ ln    + vv++++ +++ l++ +k+v +
  CDO69682.1 38 EALQNRLN-VTLDKVVQVVRYSVSDLANDVKEVKS 71
                56777777.56788999999999999999998876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8e-05
   ApoLp-III   7 lqksvkkqln.lpsqeevvetiKensenlvdqlkqvikslqeelkkksdeleealkevkkkieetadklseenPevkkkaqelqekvQsgvqslvkesq 104
                 l + + ++ n  ++  e v   +   +++v+ + ++ + ++ +   +  e+ +a ++  + + +  + +++ + e+  +aq +q++v + ++++++ ++
  CDO69682.1 161 LREGIRQSANnCKQRYEEVHGFRHDLTKFVQDVGAFTAVIEKAGCSHEAEM-KAAQDRETVLHNQLNHITA-EMELFVQAQGTQAEVREYLRTVLEKAE 257
                 566777777767777888888899999999999999999988887777665.5668999999999999999.889999********************* PP

   ApoLp-III 105 klaeslkensqeakeklakai 125
                 k  ++l+ +++e++++++k+ 
  CDO69682.1 258 KEESKLELEIAEVNADMSKLF 278
                 *****************9976 PP

>> GP41  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0011       2.4      30      82 ..      41      98 ..      18     109 .. 0.87
   2 ?    2.0   0.1     0.073   1.6e+02     101     159 ..     266     322 ..     208     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHHCHHHH..........HHHHHHHH.....S..TTSCCHHHHHCHHH CS
        GP41 30 qqeldkkleaRlsAleevvrvlgedvaslktrmklq.....ChanykliCvtkvPyna 82
                q+ l+  l+  ++ +   v +l +dv+++k   ++       +a +kl+  t+ P+ +
  CDO69682.1 41 QNRLNVTLDKVVQVVRYSVSDLANDVKEVKSIFSTTgldnlDKADWKLVTSTTTPWKS 98
                67777888888888888899**********99998888888789************65 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHH..HHHHHHHHHCHH CS
        GP41 101 evsydlaelhnliediqnqqektldeldkldklaqslanwfkllnslWvkyivvilvgl 159
                 e+    a++++l ed q    k     + ++k+a s+a +++++  +W+ yi+  +v+l
  CDO69682.1 266 EIAEVNADMSKLFEDPQLP-AKYWRSSNAMSKMAGSVAGKLDATTHIWQ-YILSDIVSL 322
                 5555666666666666654.44555578899999999999999999995.688887776 PP

>> GldM_N  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00021      0.48      78     142 ..       9      77 ..       1      95 [. 0.82
   2 ?    1.1   0.6      0.17   3.7e+02      46      99 ..     173     226 ..     146     292 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
      GldM_N  78 dedvgeikakdnldaaselmlaegksgkGkeLkkkineyreellklvnd....lakdaklieselsted 142
                 de++  i +   ++ ++ l+ ++gk++ G+ L++++n + +++ ++v+     la+d+k ++s +st+ 
  CDO69682.1   9 DENTAAIGNGMSMERLAALIKDSGKKEDGEALQNRLNVTLDKVVQVVRYsvsdLANDVKEVKSIFSTTG 77 
                 6666777777778888888887779**********************999999**********999975 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
      GldM_N  46 lekAkevkkksdelynyiealK..eeivkeaggkdedvgeikakdnldaaselmla 99 
                 ++ ++ev+    +l+++++++   ++++++ag    ++ e+ka ++ + + +  l+
  CDO69682.1 173 KQRYEEVHGFRHDLTKFVQDVGafTAVIEKAGC--SHEAEMKAAQDRETVLHNQLN 226
                 334444444444444444443311344444443..233344444444444444442 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.081   1.8e+02      26      85 ..       8      70 ..       4      75 .. 0.75
   2 ?    6.2   0.0    0.0055        12      41      82 ..     160     201 ..     156     203 .. 0.88
   3 ?    1.5   2.5      0.17   3.8e+02       6      65 ..     216     275 ..     211     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.081
     BLOC1_2 26 eklNeaasekykklkdvaaslekkl..eklnekyeelqpylqqidqi.ekqvteLeeavseLD 85
                +  N+aa+ + +++++ aa ++++   e+ +++++ l+  l+++ q+   +v++L + v+e+ 
  CDO69682.1  8 QDENTAAIGNGMSMERLAALIKDSGkkEDGEALQNRLNVTLDKVVQVvRYSVSDLANDVKEVK 70
                678999999999999999999876511556778889999999876651668999988888765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0055
     BLOC1_2  41 dvaaslekkleklnekyeelqpylqqidqiekqvteLeeavs 82 
                    +++++++++ +++yee++ +   + ++ ++v  ++++++
  CDO69682.1 160 ALREGIRQSANNCKQRYEEVHGFRHDLTKFVQDVGAFTAVIE 201
                 5568999****************************9999887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.17
     BLOC1_2   6 kvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylq 65 
                 + + +l+++l+  +++++l  +   +++e  + l++v++++ek+ +kl+ + +e++  ++
  CDO69682.1 216 DRETVLHNQLNHITAEMELFVQAQGTQAEVREYLRTVLEKAEKEESKLELEIAEVNADMS 275
                 556788899999999999999998888888888899999999888888887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2495.60
//
Query:       CDO69683.1  [L=259]
Description: hypothetical protein BN946_scf184851.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.7    8.0   6.6        9.1    6.7   6.6    1.6  1  DUF4692   Regulator of human erythroid cell expansion (RHEX)


Domain annotation for each model (and alignments):
>> DUF4692  Regulator of human erythroid cell expansion (RHEX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.6   0.00051       9.1      34     120 ..     105     191 ..      94     197 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00051
     DUF4692  34 eserllkaa.rlqapepspahksppaakelketraerstsvsepryrhdsdtssdssdssds..sspptsqatkdvnYtqvvFsapgglk 120
                    + +++a +l + ++++a+k+ +a+ke   t ++++ s s +r + d++ts   s+  ++  + p +++  k  ++ ++  sap++l+
  CDO69683.1 105 AMRHSVREAmQLSSAKLRKARKEELAQKE---TSSSKRRSRSRSRGQSDGETSDAESEKPHKatRKPVATKDEKPKDFEKISTSAPKRLN 191
                 33333443312333455555566666655...7778888888888888999998777766665567779999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1906  (0.106308); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 1672.14
//
Query:       CDO69684.1  [L=232]
Description: hypothetical protein BN946_scf184851.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.57
# Mc/sec: 1223.04
//
Query:       CDO69685.1  [L=89]
Description: hypothetical protein BN946_scf184851.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.34s 00:00:00.85 Elapsed: 00:00:00.53
# Mc/sec: 503.42
//
Query:       CDO69686.1  [L=707]
Description: hypothetical protein BN946_scf184851.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-32  111.9   2.7    3.1e-32  111.1   2.7    1.5  1  HSF_DNA-bind  HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   2.7   1.7e-36   3.1e-32       1      96 []     286     386 ..     286     386 .. 0.93

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 1.7e-36
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB..TTB--TTSEEEEESS--XXXXXXXXX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkee..kkkkkskvweFshenFkrgkpelLkk 92 
                   F++kLy++++d   +++i+W+e+g+sfvv++  ef++++l ++fkh+nfssFvrqLn+YgF+k++r+ +  +++ + ++weFsh++F rg+p+lL++
    CDO69686.1 286 FVTKLYQMINDpksSQFINWTEHGTSFVVSNVGEFSRTILGSHFKHNNFSSFVRQLNMYGFHKINRTPRaqRTSADVQTWEFSHHKFLRGRPDLLEE 382
                   9********99888999**********************************************99877755666677899***************** PP

                   XXXX CS
  HSF_DNA-bind  93 ikrk 96 
                   ikrk
    CDO69686.1 383 IKRK 386
                   ***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4212.83
//
Query:       CDO69687.1  [L=77]
Description: hypothetical protein BN946_scf184851.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 588.65
//
Query:       CDO69688.1  [L=626]
Description: hypothetical protein BN946_scf184851.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   13.6   1.1       0.45    9.8   0.3    2.2  2  Vezatin   Mysoin-binding motif of peroxisomes
      0.073   13.4   0.9       0.17   12.2   0.9    1.6  1  PAXIP1_C  PAXIP1-associated-protein-1 C term PTIP binding pro


Domain annotation for each model (and alignments):
>> Vezatin  Mysoin-binding motif of peroxisomes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   5.1e-05      0.45      50     124 ..      22      97 ..      11     107 .. 0.76
   2 ?    2.1   0.0     0.012   1.1e+02      99     234 ..     307     377 ..     291     427 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.1e-05
     Vezatin  50 irqkalnqleefvknsqaldklvrkaLiliqE..velisrgyrlssplpPisrl....edqsqsrrcagLrkalystlsal 124
                 +++++l  l+e+v++   +d++v+ka+ li +   +++ +g + s++ ++  rl      q ++ +c   r+ l    sal
  CDO69688.1  22 TTNQTLDALNELVSSGNVWDSAVNKAMMLIENeeRSIF-YGPTSSQAPSSALRLvlqsSLQTTQMQCDNVRQLL----SAL 97 
                 579***************************87535555.99999999999999955433344444444444444....444 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.012
     Vezatin  99 srledqsqsrrcagLrkalystlsalflnlrkailkLlplsegdnlekYcdiynikelglseeslsdeeaeeetdeesLdaLkflfqkfnqlrkeflcq 197
                 srl + +++r++                                                                 sL  L   +q + + ++   ++
  CDO69688.1 307 SRLTSVHTTRHPL----------------------------------------------------------------SLSGLHLALQGALSAKRYTCSH 341
                 4555555555555................................................................5555555555555555555555 PP

     Vezatin 198 LLaLlsdsskenffrwklaheilsellqsLshvlaec 234
                 LLaL   ++++  + w+ + ++++ l++ +  +++ +
  CDO69688.1 342 LLALRFNEDED-DTYWENVRSVMALLTSAFADASSRL 377
                 55555544443.2444444334444444444444444 PP

>> PAXIP1_C  PAXIP1-associated-protein-1 C term PTIP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   1.9e-05      0.17       6      90 ..     500     585 ..     497     599 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
    PAXIP1_C   6 asDdeeede..enwepppeeivklYellekdgvleLqlkclprrpptpepekeeeeeeegeeeeekeeeekkpkvpteFDFdeeseq 90 
                 a+D e++++  e w p +e + +l + + k g    ++ +  + +p+p+pe+e  +e++ +      e+  +++   eF+ d+es  
  CDO69688.1 500 ADDAERYQPrgERWGPGGEVVQELKDVIWKVGEKRRKFSERTQPQPQPQPESEAAHESQRQ-SGPAPEQFPVAARSDEFEADSESRP 585
                 6888999884456*****************9988888777777777777777776666444.4445555556666799999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4181.56
//
Query:       CDO69689.1  [L=778]
Description: hypothetical protein BN946_scf184851.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00016   21.5   0.1    0.00027   20.8   0.1    1.4  1  LisH         LisH
  ------ inclusion threshold ------
        0.1   11.4   0.5       0.18   10.6   0.5    1.3  1  FAM91_C      FAM91 C-terminus
        2.6    6.3  10.4         15    3.7   8.8    2.0  2  CDC45        CDC45-like protein
        5.3    5.8  11.5         13    4.6  11.5    1.6  1  NARP1        NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   6.1e-08   0.00027       6      27 .]      32      53 ..      31      53 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.1e-08
                HHHHHHHHCT-HHHHHHHHHHT CS
        LisH  6 LIydYLvkeGyeetAeaFekEa 27
                +IydY++k+G+++tA +++ Ea
  CDO69689.1 32 YIYDYCMKRGFHKTANELMTEA 53
                9*****************9997 PP

>> FAM91_C  FAM91 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5     4e-05      0.18     294     352 ..     633     752 ..     618     756 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4e-05
     FAM91_C 294 eekkekeesekseaeltsessvkeeeekkedsleleeee............................................................ 332
                 +++++++++++++++++++++ ++++++     + ++ +                                                            
  CDO69689.1 633 QQQQQQQHQQQQQQQQQQQQQQQQQQQQ-----QQQQ-Qqgqppqqggpqgpqpasapapatpntssmtapspqaimgnstpsmnhppppppphpapsv 725
                 1111111111111111111111111111.....1111.1233445556666666666666666666666777788888888888889999999999999 PP

     FAM91_C 333 .......wvlldlvfGiPlFdselnke 352
                        +  +d   G+P Fd+++ ++
  CDO69689.1 726 tdgidptFANIDFGAGLPDFDATMDNS 752
                 999998888888888899999887765 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.011        49     156     196 ..     400     534 ..     385     568 .. 0.57
   2 ?    3.7   8.8    0.0035        15     159     190 ..     630     661 ..     593     689 .. 0.43

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.011
       CDC45 156 deedeeedeeeskkkrksksdeeee....sddddersrkrrrse....................................................... 195
                  ++++ +++++++ kr+s+s  +e+    +++++ + rkr r++                                                       
  CDO69689.1 400 LQQQQGQNQQQRGAKRNSTSPGQEAeqlpRNESSPPDRKRARRSpggeqgqqppmtpiyppqqqggppmqpgphmqpnglmrggmqmpqysgppmagmg 498
                 333344444444555554333333335766666666677777667777777777777777777777777777777777777666666666666666666 PP

       CDC45 196 ...................................p 196
                                                     
  CDO69689.1 499 npmmgppmgtpqmspmnpgmgggmmggppppgmnnV 534
                 666666666666666666666666666666665551 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0035
       CDC45 159 deeedeees.kkkrksksdeeeesddddersrk 190
                 +++++++++ ++++++++++++++ ++++++++
  CDO69689.1 630 QQQQQQQQQqHQQQQQQQQQQQQQ-QQQQQQQQ 661
                 111110000000000000000000.00000000 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.5    0.0028        13     416     453 ..     629     666 ..     600     688 .. 0.38

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHHHHH--.......--------- CS
       NARP1 416 kakkaekkaekeeaekaekekekkaaekkakkedeeak 453
                 ++++++++++++++++++++++++++++++++++++++
  CDO69689.1 629 QQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQ 666
                 12222111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3863  (0.215461); expected 358.6 (0.02)
Passed bias filter:                     1391  (0.0775838); expected 358.6 (0.02)
Passed Vit filter:                       531  (0.0296168); expected 17.9 (0.001)
Passed Fwd filter:                       156  (0.00870099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.07u 0.43s 00:00:02.50 Elapsed: 00:00:00.63
# Mc/sec: 3710.98
//
Query:       CDO69690.1  [L=1716]
Description: hypothetical protein BN946_scf184851.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-24   85.5   0.4    3.3e-11   43.0   0.0    3.8  4  START     START domain
  ------ inclusion threshold ------
       0.09   12.6   0.3       0.29   11.0   0.3    1.8  1  SHD1      SLA1 homology domain 1, SHD1


Domain annotation for each model (and alignments):
>> START  START domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   2.1e-09   1.9e-05      55     152 ..      86     185 ..      56     202 .. 0.79
   2 !   43.0   0.0   3.7e-15   3.3e-11      12     180 ..     488     654 ..     483     668 .. 0.91
   3 !   13.2   0.0   4.7e-06     0.042      19     116 ..     956    1049 ..     954    1067 .. 0.85
   4 ?   -1.7   0.0      0.18   1.6e+03     165     191 ..    1132    1157 ..    1121    1170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.1e-09
                 SCHHH.HHHHHHCCCGGGTTCT-TT-SEEEEEEEECTTEEEEEEEE--TT..-SS-EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSE CS
       START  55 dmvaa.llveellkdaeyraqWdktlasaetvevissggalqlyvaelvalsplspRdfvflRsirelgdgsyvivdrSvtseqnppe......sssvv 146
                 d++a  +   ++l ++e r++Wd  ++sa+++e  ++++ +   +  l +  p+ pRd v+++ +     +  ++ d+S++ +++p e      s+++v
  CDO69690.1  86 DETASlDMWRSVLVTPEMRKEWDPAVESAQLLEMFDQATRISKVNFRLGW--PANPRDAVTISRTFN---DATTLIDISTSLPRSPDEptylrpSPPYV 179
                 444444667788999999********************************..*********998888...999999*****999999655566666666 PP

                 E-EESS CS
       START 147 Raellp 152
                 R+ + +
  CDO69690.1 180 RSDVAL 185
                 666655 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 3.7e-15
                 HHHHHC-TT-EEEEE.CCTTEEEEEEESSS-SCEEEEEEE.ECCSCHHHHHHHHHCCCGGGTTCT-TT-SEEEEEEEECTTEEEEEEEE--TT..-SS- CS
       START  12 kkatseeegWvllvdsengdevlqkveeskvksgealrai.gvvdmvaallveellkdaeyraqWdktlasaetvevissggalqlyvaelvalsplsp 109
                 ++ ++ e+ W++ v  e + ++++++++  + +  ++ra+ ++v   + +l++ +   + +ra Wdk + +a ++e +++ ++l +++++ ++  pl  
  CDO69690.1 488 SLLQEPEAKWKQTV--ESRGVSVSQLDSIDP-TLVVYRAEaTFVGISLWDLYAAITTPG-ARAYWDKLFDDAVLLEDVNELTELWHMKTKPAW--PLNG 580
                 67788999******..**********88778.999999872567777779999988888.7********************************..**** PP

                 EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEEXEEXXSSXX CS
       START 110 RdfvflRsirelgdgsyvivdrSvtseqnppe...sssvvRaellpSgilieplgnghskvtwvehvdlkgwlp 180
                 Rd v+l +  +++   +v +  +++++ +p      ++ +R ++ ++g  ie l+ +   vt +e+ d+kgw+ 
  CDO69690.1 581 RDMVVLKTVYKSPTTIHVFAFSADDPNLFPQIpsaDPNTIRTQVDLQGWAIEALSPNTVLVTLLEQSDPKGWSN 654
                 **************************9999877789************************************85 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 4.7e-06
                  TT-EEEEE.CCTTEEEEEEESSS-SCEEEEEEEECCSCHHHHHHHHHCCCGGGTTCT-TT-SEEEEEEEECTTEEEEEEEE--TT..-SS-EEEEEE CS
       START   19 egWvllvdsengdevlqkveeskvksgealraigvvdmvaallveellkdaeyraqWdktlasaetvevissggalqlyvaelvalsplspRdfvfl 115 
                  +gW l++ +++ ++ +++ +e  +  + + + ++vv++vaa++  ++lk+   r+qWd+ + sa++ e+   ++    +v++  +  p + R f++ 
  CDO69690.1  956 DGWALVS-EKDFPVHRKIYPEVSP-IIPVHKGEKVVEGVAAEEIVSVLKSYDCRKQWDTRFDSAAMFEAYGADAHTAFTVMKGGF--PFRDRGFYVS 1048
                  6899998.8999999999988777.8888999*******************99*****************999777777777777..7777777765 PP

                  E CS
       START  116 R 116 
                  +
  CDO69690.1 1049 S 1049
                  5 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.18
                  EEEEEEEXEEXXSSXXHHHHHHHHHHH CS
       START  165 skvtwvehvdlkgwlpkwllrslvksg 191 
                  ++ t+v  vd+ g++p ++++s+++  
  CDO69690.1 1132 TRCTRVVAVDYAGSIP-AAVNSMINGM 1157
                  8899************.7777777765 PP

>> SHD1  SLA1 homology domain 1, SHD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   3.3e-05      0.29      38      63 ..     808     833 ..     804     836 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.3e-05
        SHD1  38 kvnGvkiaVpvekmskeDleyvekvt 63 
                  +nGvki+V ve m  +Dl+ + k +
  CDO69690.1 808 MINGVKIDVVVEDMPDRDLKNLTKQK 833
                 68*****************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.46
# Mc/sec: 11199.77
//
Query:       CDO69691.1  [L=359]
Description: hypothetical protein BN946_scf184851.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-12   46.1   0.0    7.7e-12   45.1   0.0    1.5  2  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    5.8e-05   22.5   0.4    0.00017   21.0   0.0    1.8  2  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   8.6e-16   7.7e-12      72     166 ..     102     197 ..      87     260 .. 0.87
   2 ?   -2.9   0.0      0.39   3.5e+03     127     165 ..     295     337 ..     278     346 .. 0.59

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 8.6e-16
                   HHHHHHHHHHH.HH.TTSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHH.TT-SEEEEEEGG CS
  Phos_pyr_kin  72 aeiievvaekl.kk.ykvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllk.lgakaVlikGgh 165
                   +++++++a+kl ++  ++ + lDPV+  +sg+  +++e+v  +++  lplat+itPN +E+e+L++ k++++++++ea ++l++ + + +V+i    
    CDO69691.1 102 TAAVTALAKKLrDRnSELVYLLDPVL-GDSGRLYVAPEVVPIYRD-ALPLATIITPNWFEVEVLTEIKMADAASLREAIRTLHEtYRVPNVVISSIP 196
                   456778899996553444889****8.689**************9.99************************************999*****98776 PP

                   S CS
  Phos_pyr_kin 166 l 166
                   l
    CDO69691.1 197 L 197
                   5 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.39
                   HHHHHHHHT..---SSHH.HHHHHHHHHHH.TT-SEEEEEEGG CS
  Phos_pyr_kin 127 lpEaeaLlg..ekiktee.dmkeaakkllk.lgakaVlikGgh 165
                   ++ a++L +  +++++ee d++e ++k+ +  g +  li+G++
    CDO69691.1 295 HEAASMLPEdeRQATDEElDAREPMRKIKRmRGRELRLIQGQD 337
                   3333344445433333334888888888885577777777776 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-08   0.00017     145     226 ..     103     193 ..      65     194 .. 0.74
   2 ?   -1.6   0.3      0.14   1.3e+03     256     272 ..     248     269 ..     246     301 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHHHHHHTTEEEEEECESSSHH........HHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTS.SEEEEE CS
        PfkB 145 eavleelaeaaknggtfdpnlldplgaq........fkeallellaladllkpneeElealtgekledieealaalhklkakga.ktvvvt 226
                  av +++++++  +   ++ l + lg++        +++ ++++l+la++++pn  E e lt+ k +d +++ +a+ +l++++   +vv++
  CDO69691.1 103 AAVTALAKKLRDRNSELVYLLDPVLGDSgrlyvapeVVPIYRDALPLATIITPNWFEVEVLTEIKMADAASLREAIRTLHETYRvPNVVIS 193
                 3444444555555554666666666666888888889999****************************************99999999997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.14
                 THHHHHHHHHHHHHHT.....T CS
        PfkB 256 GAGDsfvggflaalle.....g 272
                 G GD f + +la++ e      
  CDO69691.1 248 GVGDLFSALVLAHFDEagaegM 269
                 8899999999999988655542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2483.98
//
Query:       CDO69692.1  [L=273]
Description: hypothetical protein BN946_scf184851.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.23   11.4   2.3       0.67   10.0   2.3    1.8  1  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3   3.7e-05      0.67      19      41 ..     228     250 ..     219     252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.7e-05
                      XXXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  19 fltaaGllallggllLlvkrRKk 41 
                      +  ++G+++++++++L+v+ R++
       CDO69692.1 228 LGALMGAAIVAAAAFLFVRFRRR 250
                      55788999999999996665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1862.12
//
Query:       CDO69693.1  [L=590]
Description: hypothetical protein BN946_scf184851.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.082   12.7   1.6       0.13   12.0   1.6    1.3  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2
       0.22   10.3   0.4        0.3    9.9   0.4    1.1  1  VSP           Giardia variant-specific surface protein


Domain annotation for each model (and alignments):
>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.6   1.5e-05      0.13       5      32 ..     175     202 ..     172     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
  Adeno_E3_CR2   5 tiaIivaVvvGlaiIiicmlyYaCcYrk 32 
                   +i++iva v+G+a I++  +y++ + r+
    CDO69693.1 175 IIGGIVAAVIGIAGIVFAVVYFVRRSRR 202
                   79********************977777 PP

>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   3.4e-05       0.3     356     394 ..     162     199 ..      90     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.4e-05
         VSP 356 sgstnksGlstGaiaGisvavvvvvgGlvGflcwwficr 394
                 + +t  s +stG i G  va+v+ ++G+v f   +f+ r
  CDO69693.1 162 AAATTSSNVSTGVIIGGIVAAVIGIAGIV-FAVVYFVRR 199
                 4678999********************98.666677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 3621.03
//
Query:       CDO69694.1  [L=142]
Description: hypothetical protein BN946_scf184851.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1015.46
//
Query:       CDO69695.1  [L=1004]
Description: hypothetical protein BN946_scf184851.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-18   65.2   9.1    6.1e-18   65.2   9.1    2.6  2  FUSC_2     Fusaric acid resistance protein-like
    1.5e-09   38.1   0.3    9.8e-09   35.4   0.1    2.2  2  ArAE_2     Aromatic acid exporter family member 2
      5e-07   28.7  13.6    3.9e-05   22.4   7.6    2.7  2  FUSC       Fusaric acid resistance protein family
    1.1e-05   24.5   9.1    0.00037   19.5   5.6    2.4  2  ALMT       Aluminium activated malate transporter
  ------ inclusion threshold ------
      0.035   14.2   0.0        0.1   12.7   0.0    1.7  1  SAB        SAB domain
       0.31   10.1  14.4      0.097   11.7   1.3    3.4  4  FUSC-like  FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   9.7       4.5   1.4e+04      20     123 ..      59     175 ..      19     180 .. 0.58
   2 !   65.2   9.1     2e-21   6.1e-18       9     127 .]     616     740 ..     600     740 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.5
      FUSC_2  20 taaivlsp..tlgasltravqRilGtvlGavlall...lly...llpgn...l...alallvfllvfli.affl..krnyalafifltllalllyslaa 101
                 t+a+  +p  tlg+ +   v  ++G +++ v++l    +++   l   +   +   +l+ll++ l++   a+++   +++++++++ +  ++l+  ++ 
  CDO69695.1  59 TVAVYFNPakTLGGMVEADVFCMMGLLFATVVSLSsmsVYWffeLQ--PgleWladVLVLLMIGLGMSVvAWMKvwMAKPTFNTACSMTAIILFVVVV- 154
                 4444444444777777777777777777776666533222323322..23343222344444444333323333213667888777555555554443. PP

      FUSC_2 102 gsgnpieialhRlldvliGili 123
                  ++++ ++++   + vl+G++i
  CDO69695.1 155 -KEGGLQTLMQVSFIVLVGAII 175
                 .455555666666666666665 PP

  == domain 2  score: 65.2 bits;  conditional E-value: 2e-21
      FUSC_2   9 lglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lala..llvfllvfliafflkrny..alafifltllalllyslaa. 101
                 +  +rgeWali++++v+spt+ga++  +v+  l   lGa++a+++++l+p+n ++l    ++f + ++++++ k++y  +++f++lt+++++lys+   
  CDO69695.1 616 FVEYRGEWALISFFVVISPTIGATNYLGVHLRL-RRLGAATAFIIWTLFPENpYVLStfGVFFSIPCFYYIVAKPQYatSARFVLLTYNLTCLYSYNLr 713
                 4448**************************988.579**************9988884345555566666777899977779*********99999655 PP

      FUSC_2 102 .gsgnpieialhRlldvliGiliallv 127
                  ++ +  +ia+hR+++v++G+++a +v
  CDO69695.1 714 qKDVAVADIAFHRAVAVTVGVVWAAIV 740
                 45555556****************986 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.25   7.5e+02      81     109 ..     184     212 ..     178     235 .. 0.89
   2 !   35.4   0.1   3.3e-12   9.8e-09       3     156 ..     746     923 ..     745     935 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.25
      ArAE_2  81 wpskkyarlqalvselvqllarLlvvlkr 109
                 wp+++ ++lq+ +++ ++ ++ Ll +l++
  CDO69695.1 184 WPQRATKNLQNNMTQTLDSFSTLLGMLTQ 212
                 9999999***9999999999999998876 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 3.3e-12
      ArAE_2   3 Pksakrlvrktlaktlselgdlyckvlsfaaerlenphihikae....................rdqirkkilevleklaglkgllvllkfElslkGrw 81 
                 P  a+r + k l++   ++g ly +++ f + + ++ + h+ +e                       +++  l+++ kl +l+gll+  + E+ lkG++
  CDO69695.1 746 PAEARRELSKALGEFCLNVGWLYTRLVAFNSFADHDVRLHTIEEedspteetsllrvnpalshsIQHFMAMELHLQIKLIELQGLLSQTQHEPRLKGPF 844
                 66689999999999999**********99999888888888777888999999999999998766778888899************************* PP

      ArAE_2  82 pskkyarlqalvselvqllarLlvvlkrle....peewlkrllrrvglldpeliadvlavlsmasqaLktGdpLPeilp 156
                 p + y+ + + ++++++ l+++  v +r e     ++  + ++  v+    e++++v++ +s+++ a + ++pLP  lp
  CDO69695.1 845 PVALYRSILTSLQTILDRLHSMRCVTSREEciysRQTVRRDFIIPVNKERREMVGNVILYFSTLAAAFRLKSPLPPYLP 923
                 ****************9999999999986532323344456778899999*************************9988 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00023      0.68     135     175 ..     169     209 ..     144     213 .. 0.86
   2 !   22.4   7.6   1.3e-08   3.9e-05      28     166 ..     622     761 ..     619     773 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00023
        FUSC 135 IvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaa 175
                 +++G + + +V + v+P++++++l++ + ++l+++++l+ +
  CDO69695.1 169 VLVGAIITNAVCLTVWPQRATKNLQNNMTQTLDSFSTLLGM 209
                 678********************************999876 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.3e-08
        FUSC  28 ywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrn.frsYafvLAGYTaalialpava...dPe 122
                  wA+++ f+V++P+ Ga+   ++ +l    lGaa+a ++  lf+++p++++     +   c +  +   + + s  fvL   T+ l +l + +      
  CDO69695.1 622 EWALISFFVVISPTIGATNYLGV-HLRLRRLGAATAFIIWTLFPENPYVLSTFGVFFSIPCFYYIVAKPQyATSARFVL--LTYNLTCLYSYNlrqKDV 717
                 5*********************8.5666899*****************9999888887777766665444499999999..677777777777433444 PP

        FUSC 123 tvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrall 166
                 +v diA  R+  +++G+v aa+Vs   +P++++++l+++l + +
  CDO69695.1 718 AVADIAFHRAVAVTVGVVWAAIVSRYWWPAEARRELSKALGEFC 761
                 5*************************************998765 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0014       4.2     146     203 ..     160     217 ..     124     251 .. 0.82
   2 !   19.5   5.6   1.2e-07   0.00037      10     174 ..     589     749 ..     579     760 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0014
        ALMT 146 elAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeylee 203
                 ++ ++ ++ +++Ga+i   v ++v+P  a ++L++ + + l++ ++ l  + + +l e
  CDO69695.1 160 QTLMQVSFIVLVGAIITNAVCLTVWPQRATKNLQNNMTQTLDSFSTLLGMLTQTFLLE 217
                 5566778999***********************************9987777766654 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.2e-07
        ALMT  10 rvvfslkvGlaltLvsllyflrplykelgkn.avWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaala 107
                  + +++k G+a ++ +   f+++    ++++ + Wa +   vv+  ++GAT   G+   l  l A + a+++  l    +     ++ ++ vF+   + 
  CDO69695.1 589 DMKYAFKAGMATAILAAPAFFEKTRPVFVEYrGEWALISFFVVISPTIGATNYLGVHLRLRRLGA-ATAFIIWTLFPENPY----VLSTFGVFFSIPCF 682
                 5789*****************9999999986368**********************999988866.457777666544444....55566677766666 PP

        ALMT 108 tflrliPaikarYdYgvlvflLTFclvvvsgyrtde....vielAvkRfltiaiGaliclivsifvfPiwa 174
                  ++   P+    Y  +++ +lLT++l  + +y+ ++    v ++A +R + + +G++++ ivs   +P  a
  CDO69695.1 683 YYIVAKPQ----YATSARFVLLTYNLTCLYSYNLRQkdvaVADIAFHRAVAVTVGVVWAAIVSRYWWPAEA 749
                 66655555....999*****************86653333589*******************988888655 PP

>> SAB  SAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.5e-05       0.1       5      32 ..     224     251 ..     223     255 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
         SAB   5 lDktqdelLKHqasIsELKRtfmEsnsk 32 
                 +Dk q  +  Hqas + LK ++ E+ s+
  CDO69695.1 224 VDKLQRAVVNHQASFTSLKKSLDEARSE 251
                 79**********************9985 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.38   1.1e+03      83     109 ..      88     114 ..      75     117 .. 0.81
   2 ?   11.7   1.3   3.3e-05     0.097      68     144 ..     159     237 ..      85     286 .. 0.75
   3 ?   -3.3   0.0       1.2   3.7e+03     161     188 ..     520     547 ..     518     553 .. 0.78
   4 ?    3.6   3.5      0.01        30      12     111 ..     656     763 ..     647     774 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.38
   FUSC-like  83 lwYgllsllwsllfpnrpvqqsLaelf 109
                 +  +l s+ ++++f+ +p  + La ++
  CDO69695.1  88 TVVSLSSMSVYWFFELQPGLEWLADVL 114
                 555788999********9999988775 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.3e-05
   FUSC-like  68 epeiwqqplllllGalwYgllsllwsllfpnrpvqqsLaelfealAdYleaKaslf...epdreddleakrlaLaqqnak 144
                  +++ q + ++l+Ga++ +++ l+++   +++ +q ++ +++++ ++ l    + f   ep+    +++ ++a+++++a+
  CDO69695.1 159 LQTLMQVSFIVLVGAIITNAVCLTVWPQRATKNLQNNMTQTLDSFSTLLGMLTQTFlleEPHG-FSVDKLQRAVVNHQAS 237
                 55789999***************************************9988887774444443.3444444445555554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.2
   FUSC-like 161 kskrgqpetksrrllrlyfvaqDihEra 188
                 +++r+++++  r+ l  yfv q+ h  +
  CDO69695.1 520 RNAREKRSKSIRKRLSAYFVPQQPHHAV 547
                 46677788888999*****999988665 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.01
   FUSC-like  12 aslivqlllpypwlf.vlglllstflftmlgalGqryatiafatL...lvaiytmlgasq....epeiwqqplllllGalwYgllsllwsllfpnrpvq 102
                 a++i +l   +p+++ ++g++ s+ +f ++ a  q +++  f  L   l  +y+ +  ++    +  ++++++++ +G +w  ++s  w+   ++r++ 
  CDO69695.1 656 AFIIWTLFPENPYVLsTFGVFFSIPCFYYIVAKPQYATSARFVLLtynLTCLYSYNLRQKdvavADIAFHRAVAVTVGVVWAAIVSRYWWPAEARRELS 754
                 44444444445544326778888888888877766666666666533334444444444477755589******************************* PP

   FUSC-like 103 qsLaelfea 111
                 ++L e +  
  CDO69695.1 755 KALGEFCLN 763
                 **9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 6006.63
//
Query:       CDO69696.1  [L=503]
Description: Laccase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-50  168.9   0.1    1.3e-45  155.4   0.1    2.7  3  Cu-oxidase    Multicopper oxidase
      1e-39  135.2   1.0    5.2e-36  123.3   0.1    3.5  3  Cu-oxidase_3  Multicopper oxidase
    1.5e-37  128.4   7.1    2.2e-34  118.1   0.1    4.0  3  Cu-oxidase_2  Multicopper oxidase
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.85    9.5   0.0    2.4  2  GlgX_C        Glycogen debranching enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.7   7.7e+03      58      77 ..      53      72 ..      17      79 .. 0.60
   2 !  155.4   0.1   2.8e-49   1.3e-45       1     159 []     163     307 ..     163     307 .. 0.90
   3 !   10.7   0.0   9.5e-05      0.42      82     135 ..     401     458 ..     365     471 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
                TSGGGEEEEETTEEEEEEEE CS
  Cu-oxidase 58 slatltvepgktyrlriinv 77
                  + ++ ++g++ r+ ++n+
  CDO69696.1 53 PGPLIKGKKGDKFRINVVNM 72
                44556667777777777754 PP

  == domain 2  score: 155.4 bits;  conditional E-value: 2.8e-49
                 EEEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETC CS
  Cu-oxidase   1 eeyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDg 99 
                 e++vitl+Dwyh +a        ++         ++d++ling g+++++ ++    +l +++v++gk+yr+r+ n+++d+++ fsI+GH +t++e+Dg
  CDO69696.1 163 ESTVITLTDWYHIAAAH------QPL------VATADSILINGLGRWAGNPTS----KLSVIEVQHGKRYRFRLLNMACDPNFMFSIDGHPMTIIEADG 245
                 689********944444......222......3468**************666....89**************************************** PP

                 ETTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEE...GSSSCHHHHTTSEEEEEEEESTT CS
  Cu-oxidase 100 vyvepvevdsldIavGqrysvlvtanqapgnYwivas...grsnlieafengtaaailrysea 159
                 ++++p +vd+l+I++ qrys++++anq++gnYwi+as   +  n    feng+++ailry++a
  CDO69696.1 246 QNTQPHTVDKLQIFASQRYSFVLNANQTVGNYWIRASpdrII-NDATGFENGINSAILRYKGA 307
                 *************************************99633.447889***********986 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 9.5e-05
                 BEEEEETSB-EEEEEE....TCETTSEEEESCEEE-.TTEEEEEEEEE-SSSEEEEEEE CS
  Cu-oxidase  82 slnfsIeGHkltVvev....DgvyvepvevdsldIa.vGqrysvlvtanqapgnYwiva 135
                  ++f ++GH ++Vv++    + +yv+pv+ d++ I+ +G  +++ +++++ +g +++++
  CDO69696.1 401 PHPFHLHGHVFSVVQSagmtEPNYVNPVKRDTVSIGnAGDNVTIRFETDN-SGPWFLHC 458
                 589************9999999*************746777777777776.77777777 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.1   1.2e-39   5.2e-36       6     118 ..      35     151 ..      31     152 .. 0.91
   2 !    5.7   0.0    0.0031        14      27      98 ..     206     281 ..     195     294 .. 0.74
   3 ?    2.6   0.0     0.029   1.3e+02      76     109 ..     437     469 ..     413     475 .. 0.85

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.2e-39
                   EEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-.....B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEE CS
  Cu-oxidase_3   6 tvsplggterevitvNgqfpgptievregdtvvvnvtNklden.....tsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYh 97 
                    vsp+g + r++++  g+ pgp i+ ++gd+ ++nv+N l+++     tsihwhGl q++++w+DG ++vtqcpi+  +sf y+f+v +qagt+wYh
    CDO69696.1  35 VVSPDGVP-RSAVLAGGTHPGPLIKGKKGDKFRINVVNMLQNEtmltaTSIHWHGLFQHESNWADGTAFVTQCPITNDDSFLYNFRVPDQAGTFWYH 130
                   46777766.*******************************5542444479*********************************************** PP

                   E--TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  98 shlslqqaaGlaGaiiiedke 118
                   shls+q+ +Gl G+++++d++
    CDO69696.1 131 SHLSTQYCDGLRGPLVVYDQH 151
                   *****************9975 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0031
                   -EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSCSGGG..-..B-TT-EEEEEEE--S-SEEEEEEE CS
  Cu-oxidase_3  27 ptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpgvtqc..p..iqpgesftyrftvkqqagtlwYhs 98 
                     iev+ g++ + ++ N + d n+  +++G  +     +DG +  ++      i + +++++ ++++q  g +w  +
    CDO69696.1 206 SVIEVQHGKRYRFRLLNMAcDPNFMFSIDGHPMTII-EADGQNTQPHTvdKlqIFASQRYSFVLNANQTVGNYWIRA 281
                   6799**************998889999999888877.88**987655322411555555555667788888888655 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.029
                   -TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-E CS
  Cu-oxidase_3  76 qpgesftyrftvkqqagtlwYhshlslqqaaGla 109
                   ++g+++t rf+ ++ +g  + h h++++ + Gla
    CDO69696.1 437 NAGDNVTIRFETDN-SGPWFLHCHIDWHLQLGLA 469
                   579999*******9.***********98767765 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   1.3    0.0027        12      47     133 ..      73     147 ..      48     151 .. 0.61
   2 !    4.3   0.0    0.0071        32      28      80 ..     202     254 ..     177     281 .. 0.78
   3 !  118.1   0.1   4.9e-38   2.2e-34       2     135 ..     354     476 ..     353     478 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0027
                   EEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-T..TEEEEEEEES..S-EEEEEEESSHHHHHTT-EEEEEE CS
  Cu-oxidase_2  47 iqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvpp..ggwvairfka.dnpGvwllHCHilwHldqGmalqfvv 133
                   +qn+t+l   ++H+HG  fq     ++n           ++ +   ++q p   ++ + + f++ d++G + +H+H+      G+ + +vv
    CDO69696.1  73 LQNETMLtATSIHWHGL-FQH----ESN-----------WADGTAFVTQCPItnDDSFLYNFRVpDQAGTFWYHSHLSTQYCDGLRGPLVV 147
                   34444446678888887.333....233...........2233333444443337788888888789999999999986666666666665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0071
                   TTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCC CS
  Cu-oxidase_2  28 fsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpk 80 
                   +s + +vi++++g++ ++ + n++   +  f ++Gh + +++ +++n+++++ +
    CDO69696.1 202 TS-KLSVIEVQHGKRYRFRLLNMACDpNFMFSIDGHPMTIIEADGQNTQPHTVD 254
                   33.7899***************99996667889999999999999985554444 PP

  == domain 3  score: 118.1 bits;  conditional E-value: 4.9e-38
                   XS-SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-T CS
  Cu-oxidase_2   2 vppklptllqltsgneeaseitngeefsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvpp 97 
                   v+p++p+llq+ sg+++a+      ++ ++ +v+tlp +++ve+ + +   + pHPfHlHGh f v+ +++g       ++ n++npv rdtv++ +
    CDO69696.1 354 VSPSVPVLLQILSGSKSAQ------QLLPHGSVYTLPPKSTVELSMPAGVVGgPHPFHLHGHVFSVV-QSAGM------TEPNYVNPVKRDTVSIGN 437
                   789*********9987766......6667*******************99999**************.77777......799*************87 PP

                   .TEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2  98 .ggwvairfkadnpGvwllHCHilwHldqGmalqfvvrp 135
                    g++v+irf++dn G+w+lHCHi+wHl+ G+a++f++++
    CDO69696.1 438 aGDNVTIRFETDNSGPWFLHCHIDWHLQLGLAIVFAEDT 476
                   79*********************************9986 PP

>> GlgX_C  Glycogen debranching enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00019      0.85      24      52 ..     251     279 ..     236     306 .. 0.80
   2 ?   -1.1   0.0      0.37   1.7e+03      38      63 ..     361     386 ..     354     401 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
      GlgX_C  24 qgakrlqilLsdrwLitlnateevaelvL 52 
                 + + +lqi  s+r+  +lna + v +  +
  CDO69696.1 251 HTVDKLQIFASQRYSFVLNANQTVGNYWI 279
                 66789*****************9988665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.37
      GlgX_C  38 LitlnateevaelvLPeGeWravpPf 63 
                 L+ + + ++ a+  LP+G    +pP 
  CDO69696.1 361 LLQILSGSKSAQQLLPHGSVYTLPPK 386
                 66666777778888999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3269.63
//
Query:       CDO69697.1  [L=147]
Description: hypothetical protein BN946_scf184851.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-31  108.0   0.0      6e-31  107.4   0.0    1.3  1  RNA_pol_Rbc25  RNA polymerase III subunit Rpc25


Domain annotation for each model (and alignments):
>> RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.0   3.3e-35     6e-31       1     129 []       6     136 ..       6     136 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 3.3e-35
                    -STTSEEEEEEEEEETTCEEEEBTTBSEEEEECCCCSTTEEEECCCTCEEEEES.............SSEEEEE-TTSEEEEEEEEEEE------- CS
  RNA_pol_Rbc25   1 PfvgevltgkiksstregikvslgffddifvpkelLfepsefdeeeqawvweve.............eeeelyldvgeeirfrveeeifvdvkpks 83 
                    Pf+ ev+ +++kss+++gi++s+gffddi+vp  +L+ep +fd++e+a +w +               + ++y+d g+ +r+rve+++f+d +p +
     CDO69697.1   6 PFPSEVILARVKSSDEDGIRLSVGFFDDIYVPLVYLPEPTAFDSKERAHFWLPGseatsahelldspLTDRMYIDAGDVVRVRVESDEFHDDEPGP 101
                    9***************************************************9999*********99999************************99 PP

                    HHHHHCHHHCCTS-SS--SSTTS--S-SCEEEEEB-STTTCECGCC CS
  RNA_pol_Rbc25  84 pkeaeleeeeaseeeaeeeeeekekkspyevlgsiqedGlGlvsWw 129
                    pk++           +  ++  +++ +py+++ s++e+GlG++sWw
     CDO69697.1 102 PKAH-----------EGVQQVRENRRPPYTITCSMAEQGLGPTSWW 136
                    9955...........4577888999********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1051.53
//
Query:       CDO69698.1  [L=277]
Description: hypothetical protein BN946_scf184851.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-50  168.6   1.0    1.3e-23   82.7   0.0    3.1  3  Mito_carr        Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   7.3e-28   1.3e-23       4      95 ..      21     133 ..      19     135 .. 0.86
   2 !   77.4   0.0   3.3e-26   5.9e-22       4      93 ..     141     233 ..     138     237 .. 0.94
   3 !    5.8   0.1   0.00073        13       4      28 ..     244     268 ..     242     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 7.3e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.....................HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.....................ildvlkkiykeeGlrglyrGllpnllrvapasal 81 
                 + +++++aGgl+g+++++vt P+dvvKtrlq++  ++k +  +                      + ++++ iy+ee  r+l++Gl+p+l++v+pa+++
  CDO69698.1  21 KSWQHFVAGGLGGMCGAIVTSPFDVVKTRLQSDLFKEKVASVSLagnggatvavprrnllwhfveTGHIIRDIYREESPRALFKGLGPTLVGVVPARSI 119
                 679*****************************544444333222445666788888999**************************************** PP

                 HHHHHHHHHHHHCT CS
   Mito_carr  82 kfvlyetlkrlllk 95 
                 +f++y   k++l +
  CDO69698.1 120 NFFTYGNGKQILAE 133
                 ******99999865 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 3.3e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 + + +l a+ lag++++++t+P++v+Ktrlq+++++ + ++ ++     ++v k+i++e+G+rgly+Gl+++ l+v+ ++a+++vlye +krl 
  CDO69698.1 141 NSWIHLSAAILAGIATGTITNPIWVIKTRLQLDAHRPSGTGPQSmlggSVSVTKQILREQGIRGLYKGLSASYLGVT-ETAIQWVLYERFKRLT 233
                 67899******************************9999888889999****************************9.**************86 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldv 28 
                 ++l++ +++g+a+ +at++t+P + 
  CDO69698.1 244 PWLATTCSAGAAKGIATVITYPHEA 268
                 67888999**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2086.69
//
Query:       CDO69699.1  [L=392]
Description: hypothetical protein BN946_scf184851.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.2e-116  387.0   0.0   3.7e-115  384.8   0.0    1.7  1  Actin     Actin
     0.0065   15.3   0.0      0.018   13.9   0.0    1.6  1  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.8   0.0  4.1e-119  3.7e-115       3     404 ..       3     386 ..       1     388 [. 0.95

  Alignments for each domain:
  == domain 1  score: 384.8 bits;  conditional E-value: 4.1e-119
       Actin   3 evsavVlDnGssttraGyagedaPkavipslvgkprgrkvea........klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdpe 93 
                 ++  +V+DnG++++++Gyag ++P++v+ps+vg+p  r +e         ++ +gdea ++r+ l+v++p+e+G+v++w++++ lw+++++e+l+vd++
  CDO69699.1   3 PSVPIVVDNGTGFVKVGYAGSNFPEHVFPSIVGRPILRAEERvsgqtmikDVMIGDEAAENRNYLQVTQPMEHGIVRNWEDMKLLWDYTFEEKLRVDTQ 101
                 66789****************************998887777889999999************************************************ PP

       Actin  94 ehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknv 192
                   ++lltepp+np+++r+++++++fE +++ ++y+a +avl+++a+g++tg+vvDsG++vt++vpV+dG++L + +rr+d++G+++t++l +ll ++  
  CDO69699.1 102 GRKVLLTEPPMNPKANRQRMCQVMFEDYGFRGVYVAIQAVLTLYAQGLTTGVVVDSGDGVTHIVPVYDGFALPHLTRRLDIAGRDVTRYLIKLLLMR-- 198
                 ************************************************************************************************8.. PP

       Actin 193 evtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss..sspeksYeLPDgseiklgeeRfkvpEiLFdpsli 289
                                             +++++ +++ e+++eiKe++c+vs+d   d++ ++  +   +sY+LPDg++ik+g+eRf++pE++F+p+l+
  CDO69699.1 199 ----------------------------GYAFNRTADFETVREIKEKLCYVSYDLDLDTRLAEetTVLVESYTLPDGRVIKIGSERFEAPECMFQPHLV 269
                 ............................9*************************999666555449999****************************** PP

       Actin 290 gsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaql...........askgvkvkiiapeeerkysaWiGGSi 377
                   e+          g++e+++++i+ + vd+r+eL+++iv++GG+s++pgl +Rleke++ql             +++k++i  p+ +rk+++++GG++
  CDO69699.1 270 DVEQP---------GVAEMLFQTIQTAAVDIRAELYKHIVLSGGSSMYPGLPSRLEKEMKQLyltrvlngdpsRLNKFKIRIEDPP-RRKHMVFLGGAV 358
                 ****9.........************************************************8888877777777777********.************ PP

       Actin 378 LAslg.tfqqlwvskqEYeEqGssvver 404
                 LA+++ + +++wv+++E+ EqG+++ ++
  CDO69699.1 359 LADIMkNREEFWVTREEWFEQGPRALDK 386
                 ***9956679************998765 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     2e-06     0.018      53     298 ..      63     320 ..      45     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-06
                 -GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE.-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE CS
    MreB_Mbl  53 tpgnikavrPlkdGviadlevaeellkyfikkvkkkkslskprvvicv.PsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvv 150
                  ++ +++++P+++G++ + e  + l  y +++  + ++ +  +v+++  P++  +  +r  + + ++ G r v++  ++++     gl     +  +vv
  CDO69699.1  63 NRNYLQVTQPMEHGIVRNWEDMKLLWDYTFEEKLRVDT-QGRKVLLTEpPMNPKANRQRMCQVMFEDYGFRGVYVAIQAVLTLYAQGL-----TTGVVV 155
                 467899***************99999999988777655.555666665055666666677788899********98777766555554.....6789** PP

                 EE-SS-EEEEEEETTEEE..EEEEES-SHHHHHHHHHHHH..H.HHHSEE--HHHHHHHHHHH-BSS--HHHH.....EEEEEEEETTTTCEEEEEEEH CS
    MreB_Mbl 151 diGggttevavislggiv..tsksvrvaGdeldeaiikyi..r.kkynlliGertaekikieigsavkeeeee.....kmeikGrdlvtglpkevevss 239
                 d G g t ++ +  g      ++++ +aG ++   +ik++  r   +n +   +t+++ik ++ ++  + + +     ++++     +    + +++ s
  CDO69699.1 156 DSGDGVTHIVPVYDGFALphLTRRLDIAGRDVTRYLIKLLlmRgYAFNRTADFETVREIKEKLCYVSYDLDLDtrlaeETTVLVESYTLPDGRVIKIGS 254
                 ********987766654422578999**********99752132357889999**********998776554432333444444443333446677766 PP

                 HHHH..HHH.HHHHHHHHHH.HHHHHHTS-HHHHHHHHH...H-EEEESGGGGSBTHHHHHHHHHS CS
    MreB_Mbl 240 eevr..eal.kepvsaivea.vkevLektppeLaadivd...rgivltGGgallkgldkllseetg 298
                 e+ +  e++ + ++  + +  v+e+L +t    a di     + ivl+GG+++  gl + l++e++
  CDO69699.1 255 ERFEapECMfQPHLVDVEQPgVAEMLFQTIQTAAVDIRAelyKHIVLSGGSSMYPGLPSRLEKEMK 320
                 65441155514455555442477777777777777774322278*****************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2679.59
//
Query:       CDO69700.1  [L=1297]
Description: hypothetical protein BN946_scf184851.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-29  102.9   9.8    1.2e-28   99.5   5.0    2.4  2  zf-HC5HC2H_2  PHD-zinc-finger like domain
    1.5e-24   87.2   0.2    1.5e-24   87.2   0.2    3.6  4  EPL1          Enhancer of polycomb-like
    1.7e-20   72.9   0.2    3.3e-20   72.0   0.2    1.5  1  Bromodomain   Bromodomain
    3.1e-20   72.2  11.6    3.7e-20   72.0   2.6    2.8  3  zf-HC5HC2H    PHD-like zinc-binding domain
    1.8e-16   59.4   8.1    3.9e-15   55.1   2.6    2.5  2  PHD_2         PHD-finger
    1.4e-13   51.1   0.3    1.4e-13   51.1   0.3    2.1  1  PWWP          PWWP domain
    2.5e-10   40.1   5.7    2.5e-10   40.1   5.7    2.8  3  PHD           PHD-finger
     0.0031   17.2   0.8     0.0031   17.2   0.8    2.3  2  zf-PHD-like   PHD/FYVE-zinc-finger like domain
     0.0081   16.4   0.6     0.0081   16.4   0.6    2.7  2  FYVE_2        FYVE-type zinc finger
  ------ inclusion threshold ------
      0.014   15.2   0.4      0.014   15.2   0.4    2.4  2  C1_1          Phorbol esters/diacylglycerol binding domain (C
      0.015   15.5   1.0       0.42   10.9   0.1    3.3  2  DUF4611       Domain of unknown function (DUF4611)
        7.9    6.5  15.7       0.29   11.1   3.5    3.0  3  Prok-RING_1   Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.012        18      53      84 ..     143     176 ..     117     179 .. 0.71
   2 !   99.5   5.0     8e-32   1.2e-28       2     110 .]     201     314 ..     200     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
  zf-HC5HC2H_2  53 rlkekCllCkkrkGaciqCs..kkeCktafHvtC 84 
                      ++C++C++++G + +     + C+ a H  C
    CDO69700.1 143 SEDSTCAICDDSEGENTNAIvfCDGCNLAVHQDC 176
                   45789*******8866554311344******999 PP

  == domain 2  score: 99.5 bits;  conditional E-value: 8e-32
  zf-HC5HC2H_2   2 eCvlCkkkgGalkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlke..kCllCkkrkGaciqCskkeCktafHvtCalaaglvmele 95 
                   +C+lC+++gGa+k+t  ++wvH+lCa+++pe++++n+  +epv+ +eki k+r+k+  +  +C  r+GaciqCsk +C tafH+tCa++++l m ++
    CDO69700.1 201 SCILCPNEGGAFKQTVSGEWVHLLCAIWIPETTVANEVFMEPVTgIEKISKQRWKLvsQHQVCGIREGACIQCSKPSCFTAFHATCARKEKLLMPMK 297
                   7****************************************************98622678*********************************999 PP

  zf-HC5HC2H_2  96 dlek..klkvialckkh 110
                     +     +  a+c++h
    CDO69700.1 298 AAQGseAPTLAAYCERH 314
                   98775566788999988 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.2   9.8e-28   1.5e-24      84     157 .]      25     126 ..       8     126 .. 0.86
   2 ?   -1.7   0.2       2.2   3.3e+03      76      89 ..     748     820 ..     673     860 .. 0.59
   3 ?   -1.3   2.5       1.7   2.5e+03      24      82 ..     930     994 ..     913    1061 .. 0.57
   4 ?   -3.3   0.6       7.1   1.1e+04      24      54 ..    1236    1266 ..    1222    1279 .. 0.40

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 9.8e-28
        EPL1  84 kLpkPsfre............................ferppssyirfsekseeelddeveYdMDEeDekWLeelnekrkkegvekisediFEivmdrl 154
                  Lpk+sf +                            f  p+++yir++e  e +l+ +veYdMDE+D++WL+++n++rk+++++k+s ++FEi+mdrl
  CDO69700.1  25 ALPKVSFVRvtdevtqqppgvhdhiaksygyndfndeFVLPEEHYIRYIEPLESDLAIQVEYDMDEQDQEWLDAVNQERKAQQLDKVSYETFEIIMDRL 123
                 57777777767777777777777777777766666666667********************************************************** PP

        EPL1 155 Eke 157
                 Eke
  CDO69700.1 124 EKE 126
                 **8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
        EPL1  76 e...........................................................slkkeelkLpkPs 89 
                                                                               ++e++ Lp P+
  CDO69700.1 748 GqgtgqtastsvekparkprksagtpaqdipltveevdnrksfamfergwilppdhkrggRVPVERQPLPPPK 820
                 0111111111222222222222233333455555555556666666666666666666665566666666664 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.7
        EPL1  24 eseseeeiseknsnkensqqavetgvdkkeenekh.qviaaakkkesssasske.......slkkee 82 
                 + +++ee+++++ ++++  ++ ++ + +k+e+ +h ++ ++ ++ + ++++  e       + +k++
  CDO69700.1 930 DATRAEEPQAISTESQSYAHDLDAAQGHKSEDCEHdRASEQITA-HLAEPEP-ElegehpqAEPKQR 994
                 23445666666666666666666666666666333122221111.1111111.12333333233333 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.1
        EPL1   24 eseseeeiseknsnkensqqavetgvdkkee 54  
                  + e+ +e+ +k+++++ s  +  +  ++++e
  CDO69700.1 1236 HAENRDEPPAKRQRTRPSRASARQRPESTNE 1266
                  2333333333333333332222222222222 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.2   2.2e-23   3.3e-20       4      82 ..     486     564 ..     483     566 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 2.2e-23
                  HHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain   4 ilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82 
                  +++++++h++  +F +pv++ e+pdyy++i++P++   I ++l+s++Y  la+f+ d++l+++Na++yn+ +++ y  a
   CDO69700.1 486 AFEKVISHDRQGYFKSPVNRNEVPDYYDIIREPMCWDIIDRRLDSHEYLDLAEFKRDVELVVTNAMMYNQANTPFYRTA 564
                  68999***********************************************************************987 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1      0.01        15      34      65 ..     143     176 ..     120     180 .. 0.80
   2 ?   -3.0   0.1         6     9e+03      37      48 ..     200     211 ..     191     214 .. 0.77
   3 !   72.0   2.6   2.5e-23   3.7e-20       1      89 [.     222     314 ..     222     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.01
  zf-HC5HC2H  34 rkklkCylCk....kkvGaciqCskkkCkkafHvtC 65 
                 +++ +C +C+    +++ a++ C+   C+ a H  C
  CDO69700.1 143 SEDSTCAICDdsegENTNAIVFCDG--CNLAVHQDC 176
                 56789*****544444779999987..*******99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6
  zf-HC5HC2H  37 lkCylCkkkvGa 48 
                  +C+lC ++ Ga
  CDO69700.1 200 VSCILCPNEGGA 211
                 689999999777 PP

  == domain 3  score: 72.0 bits;  conditional E-value: 2.5e-23
  zf-HC5HC2H   1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkC..ylCkkkvGaciqCskkkCkkafHvtCakeagllleee....eekeklksyCkkH 89 
                 H++Ca+wipe+++++e    me+++++eki+k+r+kl+    +C  + GaciqCsk++C +afH tCa++++ll+ ++    +e  +l +yC++H
  CDO69700.1 222 HLLCAIWIPETTVANEV--FMEPVTGIEKISKQRWKLVSqhQVCGIREGACIQCSKPSCFTAFHATCARKEKLLMPMKaaqgSEAPTLAAYCERH 314
                 99*********998876..6****************9762268*********************************9955444455********9 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   2.6   2.6e-18   3.9e-15       1      36 []     159     193 ..     159     193 .. 0.97
   2 !    6.9   0.3    0.0031       4.6       4      20 ..     270     288 ..     267     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2.6e-18
       PHD_2   1 tnpllsCdkCsvaVHasCYGvskesdgeeWlCrrCe 36 
                 tn +++Cd+C++aVH++CYGv+++++g +WlCr+C+
  CDO69700.1 159 TNAIVFCDGCNLAVHQDCYGVPYIPEG-QWLCRKCT 193
                 799************************.*******5 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0031
       PHD_2   4 llsCd..kCsvaVHasCYG 20 
                  ++C+  +C +a+Ha C +
  CDO69700.1 270 CIQCSkpSCFTAFHATCAR 288
                 589*9999*********86 PP

>> PWWP  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.3   9.1e-17   1.4e-13       4      79 ..    1155    1236 ..    1152    1257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 9.1e-17
                  TEEEEEEESSSEEEEEEEEECC..CCCCCCHCT---SSS.EEEEEETTTTEE...EEE-GGGEEE-SHHHHHHHHHTTSS-H CS
        PWWP    4 gdlvwakvkgypwWPavvidpe..evpekvlkkkekske.lylVkFfgdkey...awvkekdlkpfteedeeeylkkkkkkk 79  
                  g+lvwak+++ypwWPavv++++  evp +vl + ++++  l lVkF+ +k+    awvk+k+++++ e+d ++ l+++  ++
  CDO69700.1 1155 GTLVWAKIESYPWWPAVVFEEDdpEVPPSVLARAPSPEPdLELVKFYEKKHInnwAWVKHKNMRYLGEDDRKDALAEMDIEH 1236
                  89****************97651166666666555444479******99997789******************999987665 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   5.7   1.7e-13   2.5e-10       2      51 ..     148     194 ..     147     195 .. 0.93
   2 ?   -3.4   0.0       6.6   9.8e+03      23      30 ..     219     226 ..     218     231 .. 0.85
   3 !    6.0   1.5    0.0074        11       4      31 ..     262     288 ..     261     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.7e-13
                 BTTTTS.TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkk.ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 Ca+C++ + ++ + +v+CdgC+ ++Hq+C+++p     +peg+wlC+kC+ 
  CDO69700.1 148 CAICDDsEGENTNAIVFCDGCNLAVHQDCYGVP----YIPEGQWLCRKCTV 194
                 ******99999**********************....559999******85 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.6
                 CEEETTTS CS
         PHD  23 rwfHqkCl 30 
                 +w+H  C 
  CDO69700.1 219 EWVHLLCA 226
                 79****95 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0074
                 TTTSTTSTTSCEEEETT..TSCEEETTTSS CS
         PHD   4 vCkkksdeeeelvqCdg..CkrwfHqkClk 31 
                 vC+     e+  +qC +  C ++fH +C +
  CDO69700.1 262 VCGI---REGACIQCSKpsCFTAFHATCAR 288
                 5666...58999***8555*********86 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.8     2e-06    0.0031       1      31 [.     148     178 ..     148     184 .. 0.95
   2 ?   -3.0   1.3       3.2   4.8e+03      12      30 ..     267     287 ..     258     303 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  C++C  s+ e++ ++v+C GC l+ h+ C G
   CDO69700.1 148 CAICDDSEGENTNAIVFCDGCNLAVHQDCYG 178
                  99******99*******************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.2
  zf-PHD-like  12 kgqlvyCq..GCslsyhkaCl 30 
                  +g+ ++C    C +++h +C 
   CDO69700.1 267 EGACIQCSkpSCFTAFHATCA 287
                  366666653357777777774 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   5.4e-06    0.0081      16     102 ..     103     194 ..      87     198 .. 0.77
   2 ?   -1.0   0.7       1.3     2e+03      40      67 ..     251     280 ..     243     294 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.4e-06
      FYVE_2  16 qrdeklrkkeeeRlgelkekleke..kskrellgnqakl..gethCilCleefkllvnskrqCldCklnvCkkC.svenkkekvwlCkiCse 102
                 +++++l+k   e  + + ++leke  ++ +++  ++  l  ++++C  C ++ +  +n  + C+ C+l v + C +v    e  wlC+ C  
  CDO69700.1 103 RKAQQLDKVSYETFEIIMDRLEKEwfDLSKNIPKSDMALpsEDSTCAICDDSEGENTNAIVFCDGCNLAVHQDCyGVPYIPEGQWLCRKCTV 194
                 478889999999999999999999444456665555655335689*****************************4455899*********86 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      FYVE_2  40 kskrellgnqak..lgethCilCleefkll 67 
                 k + +l+++++   + e  Ci+C ++  + 
  CDO69700.1 251 KQRWKLVSQHQVcgIREGACIQCSKPSCFT 280
                 445566666554225677899998886654 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.4   9.6e-06     0.014      11      43 ..     145     177 ..     141     179 .. 0.91
   2 ?   -2.0   3.2       2.3   3.4e+03      25      45 ..     267     289 ..     259     297 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.6e-06
                 --B-TTT-SB--S.SSS-EEEETTT--EE-CCCC CS
        C1_1  11 ptfCkhCgeflwg.kekqglkCswCkllvHkkCh 43 
                  ++C+ C+++  g     ++ C+ C+l vH++C+
  CDO69700.1 145 DSTCAICDDSE-GeNTNAIVFCDGCNLAVHQDCY 177
                 578*******9.7799*****************7 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                 SS-EEEETT..T--EE-CCCCTT CS
        C1_1  25 ekqglkCsw..CkllvHkkChek 45 
                 e  +++Cs   C   +H  C++k
  CDO69700.1 267 EGACIQCSKpsCFTAFHATCARK 289
                 55667777444889999999887 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.32   4.8e+02      51      93 ..     319     356 ..     308     363 .. 0.41
   2 ?   10.9   0.1   0.00028      0.42      59      96 .]    1213    1250 ..    1197    1250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.32
     DUF4611  51 eqeaqddvaaagdeeeegededdeeeekniknktksdePpaKr 93 
                 +qea+ ++ +a  +  +g+d dd + +    + +ks+   aK 
  CDO69700.1 319 QQEARASALRA--QRTDGSDTDDGQTN---AKSNKSARAYAKT 356
                 44433332222..22333333333332...2222233333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00028
     DUF4611   59 aaagdeeeegededdeeeekniknktksdePpaKrtKp 96  
                  ++++   + ++d  d+ +e +i++ ++ dePpaKr+++
  CDO69700.1 1213 KHKNMRYLGEDDRKDALAEMDIEHAENRDEPPAKRQRT 1250
                  55555666788899*********************986 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.5   0.00019      0.29       4      35 ..     145     177 ..     143     179 .. 0.83
   2 ?    0.5   1.9      0.41   6.1e+02      29      48 ..     258     277 ..     257     283 .. 0.84
   3 ?    1.6   0.7      0.18   2.7e+02      24      38 ..     276     290 ..     271     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
  Prok-RING_1   4 gkkCpvCgkelkee.dDiVvCpeCgtpyHraCy 35 
                  ++ C +C++   e+ + iV C+ C    H++Cy
   CDO69700.1 145 DSTCAICDDSEGENtNAIVFCDGCNLAVHQDCY 177
                  578****9865544389***************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.41
  Prok-RING_1  29 pyHraCyekagkCvneelhs 48 
                  ++H+ C  ++g C++ +++s
   CDO69700.1 258 SQHQVCGIREGACIQCSKPS 277
                  79***********9877665 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.18
  Prok-RING_1  24 peCgtpyHraCyeka 38 
                  p C t +H +C +k+
   CDO69700.1 276 PSCFTAFHATCARKE 290
                  89*********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 8442.70
//
Query:       CDO69701.1  [L=206]
Description: hypothetical protein BN946_scf184851.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-31  109.7   0.8    2.4e-31  108.8   0.8    1.6  1  DNA_pol_delta_4  DNA polymerase delta, subunit 4
  ------ inclusion threshold ------
       0.16   11.5   0.6       0.25   10.9   0.3    1.6  1  Gp_dh_C          Glyceraldehyde 3-phosphate dehydrogenase, C-


Domain annotation for each model (and alignments):
>> DNA_pol_delta_4  DNA polymerase delta, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.8   2.7e-35   2.4e-31      31     130 ..      89     198 ..      10     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 2.7e-35
  DNA_pol_delta_4  31 t.....kepekleeelkaekelekqidkewkkieeerka.....ppvHaeelskvekvLreFDvsskYGPciGltRleRWkRAeklgLnPPeev 114
                      +     ++ e  + e + eke+ +  dk+w+k +++++a     ++vHae+ + v+++Lr FD+s++YGPc+G+ R++RW+RA++lgL+PP ev
       CDO69701.1  89 ArrapkTNVEVVDLEPELEKEPLNPADKRWSKAYAAARAkrgnlQAVHAEGQTAVHHILRAFDLSYEYGPCVGMSRIDRWERAQALGLDPPPEV 182
                      2222222334445555555667777788888888888887777999************************************************ PP

  DNA_pol_delta_4 115 kavLlkeeaeeekkke 130
                      k++Ll++e+++++++ 
       CDO69701.1 183 KEILLTKEGSTDEQYT 198
                      ***********99875 PP

>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   2.8e-05      0.25      48      96 ..      60     109 ..      38     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.8e-05
                 CSSEEEE-THHH.HHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESST CS
     Gp_dh_C  48 eniiptstgaak.avglVlpelkgkldglAvrVPtpnvsvvdlvveleke 96 
                  nii +++ a+    g V+p  k +   +A r P +nv vvdl  eleke
  CDO69701.1  60 TNIIDSDSDASDvEAGPVVPAAKKRRLNTARRAPKTNVEVVDLEPELEKE 109
                 79999999876435678******999999*****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1386.25
//
Query:       CDO69702.1  [L=210]
Description: hypothetical protein BN946_scf184851.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-44  150.8  10.7      3e-44  150.5  10.7    1.1  1  Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (
  ------ inclusion threshold ------
       0.17   12.1   6.1       0.23   11.7   5.7    1.5  1  Cortex-I_coil  Cortexillin I, coiled coil
       0.21   11.9   0.0       0.32   11.3   0.0    1.3  1  Peptidase_C10  Peptidase C10 family
          2    8.3   6.6        1.3    8.9   4.7    1.7  2  SLATT_1        SMODS and SLOG-associating 2TM effector domain


Domain annotation for each model (and alignments):
>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5  10.7   6.7e-48     3e-44       1     163 []      40     202 ..      40     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 6.7e-48
                    HHHHHHHCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH CS
  Mt_ATP-synt_B   1 liayliSkeiyvvneEtlvalcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqekklqslveltkslfevskeqvalea 96 
                    l+a++iS+e+yvvneEt+ a+ f++++ l++k +++ + +++++ i+ ++++ln sr+++++++k+ri+++++++ +v++t+ lf+ ske+++le 
     CDO69702.1  40 LLATAISQELYVVNEETVIAAGFFILISLIYKATKEPYRDWAEGHIKRVRDILNNSRSEHTQVVKDRIQSVEQMKDVVAITEGLFALSKETAKLES 135
                    5799******************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTCCCCHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  97 eaferelqaklareikkkldtlvnaessrrqrlQdelvkgvissVlkelsspkfkkevlqesiadle 163
                    eaf + ++++la+e+k +ld++v+ e++ ++++Q elvk vi++Vlk+l ++k + e+l+ +ia++e
     CDO69702.1 136 EAFVQRQKVALASEVKAVLDSWVRFEQQAKESEQAELVKAVIENVLKNLNNEKTQREILAGAIAEIE 202
                    ****************************************************************997 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.7   5.1e-05      0.23      23      92 ..     131     202 ..     104     210 .] 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
                    HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  23 nslesekvsreelikqkdelesllas.leseaaerekrlre.leakldealknleleklarlelesrlskte 92 
                      lese   + + +    e++ +l s ++ e++ +e   +e ++a ++++lknl++ek  r  l   ++ +e
     CDO69702.1 131 AKLESEAFVQRQKVALASEVKAVLDSwVRFEQQAKESEQAElVKAVIENVLKNLNNEKTQREILAGAIAEIE 202
                    468999988888888888888888764455555555555552699*************99988877777666 PP

>> Peptidase_C10  Peptidase C10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.1e-05      0.32      20     150 ..      35     187 ..      19     202 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.1e-05
                    -..--HHHHHHHHHHHHHT.......................--SB-SS-EEEE--TT-EEEE-GGG-B--TTTS-.SB--S-S-HHHH......H CS
  Peptidase_C10  20 l..tGCvatAmaqilkyyk.......................wpkkgsgeqsytlkksesleadlseesldwdnmk.esydksateeqa......n 83 
                    +  tG +atA++q l++ +                       +       ++++  + ++++  l++++ + +++  ++++  + e+ +      +
     CDO69702.1  35 IlgTGLLATAISQELYVVNeetviaagffilisliykatkepY-------RDWAEGHIKRVRDILNNSRSEHTQVVkDRIQ--SVEQMKdvvaitE 121
                    2469************999666666666666665532222211.......2222222223333333333333332213333..2333330111114 PP

                    HHHHHHHHHHHHTT---SSS-----HHHHHHHHHHTS---TT-EEE-GGGS-HHHHHHHHHHHHHTT CS
  Peptidase_C10  84 avakLmrdvGvavkmeYtpegsgalssnvvkalndyfgYdkeisllsrsnysssewedlvkneleag 150
                       +L ++ ++  +  + + +  al+s+v  +l ++++++++++  ++ ++ ++ + ++v ++l+++
     CDO69702.1 122 GLFALSKETAKLESEAFVQRQKVALASEVKAVLDSWVRFEQQAKESEQAELVKA-VIENVLKNLNNE 187
                    4446888888888889999*********************88888888877664.445555556654 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.21   9.6e+02      97     113 ..     101     122 ..      31     133 .. 0.61
   2 ?    8.9   4.7    0.0003       1.3      52     117 ..     139     207 ..      86     209 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.21
     SLATT_1  97 a.....eateeewaklVadaEe 113
                 +      ++ e+++++Va +E 
  CDO69702.1 101 QvvkdrIQSVEQMKDVVAITEG 122
                 1333334455555666666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0003
     SLATT_1  52 v..dlvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraaleaeateee.waklVadaEeaisr 117
                 v  + v++++ v a l +W+ ++q  + +++ +l+   +e++ ++l++e+t++e +a ++a+ E+++++
  CDO69702.1 139 VqrQKVALASEVKAVLDSWVRFEQQAKESEQAELVKAVIENVLKNLNNEKTQREiLAGAIAEIEQLVKS 207
                 2347789999999999*******************************96665552799******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2113  (0.117854); expected 358.6 (0.02)
Passed bias filter:                      850  (0.0474092); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1398.61
//
Query:       CDO69703.1  [L=477]
Description: hypothetical protein BN946_scf184851.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-14   51.8   0.0    1.6e-13   50.8   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
     0.0014   19.3   0.0     0.0041   17.8   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.037   13.6   0.0       0.81    9.2   0.0    2.2  2  MTS              Methyltransferase small domain
      0.042   14.6   0.0        0.2   12.4   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
       0.16   11.7   0.0       0.37   10.6   0.0    1.6  1  Methyltransf_31  Methyltransferase domain
       0.17   11.2   0.0       0.26   10.6   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
       0.32   11.0   2.1        2.2    8.4   0.7    2.6  2  DUF1658          Protein of unknown function (DUF1658)


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   6.2e-17   1.6e-13      15     148 ..     238     392 ..     226     408 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 6.2e-17
  Methyltransf_16  15 esigrkvWdaavvlvkylekklake...lganelsklsvlELGsGtGlvGlavael........lpeakviltDlee.llellkknielnkn.. 94 
                        +g++ W +a +l++ +++   +    ++ ++ + l+vlELG+GtGlv la a+l         +e  v+ tD++  +l++l +ni++n    
       CDO69703.1 238 ATVGAHTWGSACLLAEMISEVP-DRfglTEDSKPRSLRVLELGAGTGLVSLATAKLlsargntsSTEPTVVATDYHPeVLNNLAHNIKANFPeg 330
                      489*************999964.3357788889999*******************99999987448889*****9644***********87676 PP

  Methyltransf_16  95 .alkskvkvevLdWg...eeleedlle.....keevDlilaaDcvYledslelLvkvLkellk 148
                       a++ + ++++LdW     ++++   +      +++D+i  aD++Y +     + +++  ll+
       CDO69703.1 331 sAHHVSLSAHPLDWSvysGKITNVS-TlaapfDTPFDVIFGADIIYEAAHARWIRDTVAALLR 392
                      6888888999****63322232211.1111225789***********9999988888888776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06    0.0041       1      71 [.     275     348 ..     275     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                      EEEET-TTSHHHHHHHCTS....T....SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl....g....kakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvss 71 
                      vL+lG+GtG ++la ak l    +    + +v+++D+ +e l++ ++++     +++f +g+a+++++ ++  D  v s
       CDO69703.1 275 VLELGAGTGLVSLATAKLLsargNtsstEPTVVATDYHPEVLNNLAHNI-----KANFPEGSAHHVSLSAHPLDWSVYS 348
                      9***********9999997666414456899***************999.....4566666666666666666554444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.059   1.5e+02      80     112 ..      78     108 ..      28     119 .. 0.71
   2 ?    9.2   0.0   0.00032      0.81      31      88 ..     271     336 ..     247     346 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.059
                 GCEEEEE-STTTTSTTS-EEEEEE---STTTCH CS
         MTS  80 levevvasdvleeveekkfdlivsNPPfhagka 112
                 + ++ +  dvle+v   k+   + NPP++  + 
  CDO69703.1  78 AVIHEHSVDVLENVL--KYLRTIYNPPVRGTRR 108
                 347778899999999..888899****997766 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00032
                 TCSEEEEET-TTSHHHHHHHHH........TTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-S CS
         MTS  31 lsgkvlDlGcGaGvlgaalake........speaevtlvdvdarAlesakenleanklevevvasd 88 
                 +s +vl lG+G+G++++a ak         s e +v+++d + + l+   +n++an  e+++++ +
  CDO69703.1 271 RSLRVLELGAGTGLVSLATAKLlsargntsSTEPTVVATDYHPEVLNNLAHNIKANFPEGSAHHVS 336
                 5668*************9998621111111233347777777777777777887777776666655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   4.3e+03      66      90 ..      75      99 ..      45     100 .. 0.76
   2 ?   12.4   0.0   7.9e-05       0.2       1      85 [.     276     383 ..     276     393 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
  Methyltransf_12 66 sfDlvvasnvlhhlkdirevldnir 90
                       D+v+  + + +l+++ ++l+ i+
       CDO69703.1 75 EGDAVIHEHSVDVLENVLKYLRTIY 99
                     6688888888888888888888887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.9e-05
  Methyltransf_12   1 LeiGcGtGsllrallekl........pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...................ssf 67 
                      Le+G+GtG ++ a ++ l         + +++++D++p+++    + la++++ n+ +    + +l+ ++                       f
       CDO69703.1 276 LELGAGTGLVSLATAKLLsargntssTEPTVVATDYHPEVL----NNLAHNIKANFPEGSAHHVSLSAHPLDwsvysgkitnvstlaapfdTPF 365
                      8*************9999*******9999************....5555555433333333333322222225556667777777777777777 PP

  Methyltransf_12  68 Dlvvasnvlhhlkdirev 85 
                      D+++ ++ +   ++ r +
       CDO69703.1 366 DVIFGADIIYEAAHARWI 383
                      777766666555555555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.37       5      57 ..     273     332 ..     270     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  Methyltransf_31   5 lrvlDlGCGtGeltfelae....elgpkae.......vvGiDiseeaielArenaqklgldnve 57 
                      lrvl+lG+GtG  +++ a+    +     +       vv  D+ +e+++    n + ++ +   
       CDO69703.1 273 LRVLELGAGTGLVSLATAKllsaRG----NtssteptVVATDYHPEVLNNLAHNIKANFPEGSA 332
                      79****************9666533....23334666***********9999988887776433 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.26     163     217 ..     272     327 ..     239     368 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
        PrmA 163 e.evlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleval 217
                 + +vl +G+G+G+ ++a akL  ++     +++  v    +   lN+++++++ + 
  CDO69703.1 272 SlRVLELGAGTGLVSLATAKLLSARGNTSSTEPTVVATDYHPEVLNNLAHNIKANF 327
                 348****************9977655555555555544444444454444444433 PP

>> DUF1658  Protein of unknown function (DUF1658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.7   0.00086       2.2       5      18 ..     106     122 ..     101     123 .. 0.89
   2 ?    0.6   0.0      0.25   6.3e+02       8      14 ..     412     418 ..     410     423 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00086
     DUF1658   5 TrriPARPs...HGrdG 18 
                 Trr+++ P+   HG +G
  CDO69703.1 106 TRRVGRKPTgklHGDVG 122
                 9*************998 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.25
     DUF1658   8 iPARPsH 14 
                 iP RP+H
  CDO69703.1 412 IPLRPTH 418
                 899**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3254.52
//
Query:       CDO69704.1  [L=287]
Description: Carbohydrate Esterase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-06   29.0   0.0    1.7e-06   28.6   0.0    1.2  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
  ------ inclusion threshold ------
      0.056   13.4   0.0      0.075   13.0   0.0    1.3  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.9e-10   1.7e-06      14     176 ..      67     267 ..      23     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.9e-10
                    CCHCHHCCCCCCCHHHTT.-EEEEE..EEHCCH-H....HHHHHHHHCTGGG-T.........SEEEEE--CCCCCTT--HHHHHHH..HHHHHHH CS
  Lipase_GDSL_2  14 gggrsypaylarllaarl.gldvvnn.lgvsGatt..allrllerlrdllrlkp.........dlvtiliGtNDlgrgvpaaaaaandnleelida 96 
                    +++ ++ + l +l++a+  g + +++ ++ +G+      +++++++    + kp          l   ++G+ND++ +++a++++a+   ++ + +
     CDO69704.1  67 TYEPNWVGHLVELVRAQRnGSPLIVYdYALGGEAAsgVKRQIEKEFSPHVATKPewaswtsedTLFATWVGINDCAMNASAPDPVAA--TKASVGE 160
                    667778888888887777766666667******665767788888887777777899999996777799*****9999999999999..6666666 PP

                    HCCC........GEEECEEEEE-TTT-TTSTCC..HHHHHHHHHHHHHHHHHHCT-EEE-H....................HHHHHHCCCCCGGBB CS
  Lipase_GDSL_2  97 lraa.....apgarilvlgplpptpeaaadare..lnaviaaynealrevaaeegvpfvDl....................hdaladsgerladll 165
                    l a+      +gari++   +ppt+  ++  +   l+++i  +n  lre  ++  ++ +D+                    +++  +++++ + + 
     CDO69704.1 161 LFARqeelyRHGARIFCFVDVPPTYDFPEIVKPtkLREAISTWNISLRESVERFSAVHADAtvflwssfdffnrllaipeaFGFRKEDTKKAEGDI 256
                    6666556688899***76666666666666666568*************************99999999999999999998888888888888888 PP

                    TTS.SSB-HHH CS
  Lipase_GDSL_2 166 addglHPnaaG 176
                     +dglHP+ + 
     CDO69704.1 257 FEDGLHPTSQV 267
                    8888***9875 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.4e-06     0.075      56     199 ..     106     274 ..      21     275 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.4e-06
                  ECTTTECHHHHHCTTS.........EEEEE--CTCC-EECSSCTTTCEEHHHHHHHHHHHHH...HHHHHHHTTEEEEEEE-SSTCH..CTCCCCHCC CS
                  xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
  Lipase_GDSL  56 nkyplkseqlkalhpd.........lviislGtNDsnlgkkstdaakkeaeeyiknlreaik...elkeegapkaivvlvsppglgp..qeekdakkl 139
                   ++++ ++++ a +p+         l+  ++G ND+      +  a  ++++ ++++ e+     el+++ga+ +  v v+p   +p   + ++ ++ 
   CDO69704.1 106 RQIEKEFSPHVATKPEwaswtsedtLFATWVGINDC----AMNASAPDPVAATKASVGELFArqeELYRHGARIFCFVDVPPTYDFPeiVKPTKLREA 199
                  33444466666666666666666699999*******....4444444444444444444433333899888555555544444444466444444444 PP

                  HHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCH.................TSSSB-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxx RF
  Lipase_GDSL 140 gekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlka.................DglHpsekgyeklael 199
                    ++n  ++e  +r +++ +++++ ++  +d + +l   + ++a                 DglHp+++ +  ++++
   CDO69704.1 200 ISTWNISLRESVERFSAVHADATVFLWSSFDFFNRL--LAIPEAfgfrkedtkkaegdifeDGLHPTSQVHLFMSRE 274
                  444444444555555555558889999888888888..66666677777788888889999**********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2057.15
//
Query:       CDO69705.1  [L=309]
Description: hypothetical protein BN946_scf184851.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0024   18.6   0.0       0.13   12.9   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.18   11.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.5e-05      0.13       2      58 ..      96     151 ..      95     167 .. 0.75
   2 ?    3.3   0.0     0.015   1.4e+02      55      95 ..     186     226 ..     177     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedl 58 
                      Ld+Gc  G++++++   + + ++v++ D+ +++++ +r ++   +l  ++ +   e++
       CDO69705.1  96 LDIGCCFGNDIRKAVYDGyPIENVVASDLHPALMQSIRPEFW--ELGHKLFKSTPETF 151
                      9**********9998886579***************998874..34445554444444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.015
                      CCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25  55 aedlpfedgsfDlvvssga.lhhlsdedlekalkeiarvLkp 95 
                      +++l+   g++ ++++s a +h++++e++ ++ + +  +L p
       CDO69705.1 186 ITSLNPLRGHVSAIHAS-AfFHLFDEEQQLQLARALGGLLSP 226
                      677788889999****6.65999***9999999998888877 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     2e-05      0.18      14     117 ..      84     233 ..      65     266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiae.........................................ka 63 
                      + +l+k+r+g+  LdiGc  G+  + + + g+   +v++ Dl p++ + ++                                          +
       CDO69705.1  84 L-TLGKERKGAIFLDIGCCFGNDIRKAVYDGYpieNVVASDLHPALMQSIRpefwelghklfkstpetfpvpfisgdafdpahlepippfysPP 176
                      2.33569******************999999888899999999998888889999999988887777776665554444444444444444422 PP

  Methyltransf_23  64 kkaqkdqfdeqeaaepqgkfdlIvlrevlehvp..dppellrqiatllkpg.Gylll 117
                       + +++     +  +  g+   I+++ +++ ++      l r ++ ll+p+ G ++l
       CDO69705.1 177 ATPRPELSTITSLNPLRGHVSAIHASAFFHLFDeeQQLQLARALGGLLSPEpGSMIL 233
                      222222222223333555888888888888887444777777777777777676665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2406.51
//
Query:       CDO69706.1  [L=258]
Description: hypothetical protein BN946_scf184851.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2002.37
//
Query:       CDO69707.1  [L=633]
Description: hypothetical protein BN946_scf184851.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-72  243.0   0.1    6.1e-72  242.3   0.1    1.2  1  DPPIV_N        Dipeptidyl peptidase IV (DPP IV) N-terminal re
    7.3e-49  166.1   0.8    1.1e-48  165.5   0.8    1.2  1  Peptidase_S9   Prolyl oligopeptidase family
    6.5e-06   25.9   3.0    2.4e-05   24.1   1.8    2.2  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    0.00051   19.8   0.2    0.00089   19.0   0.2    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0015   19.2   1.4     0.0015   19.2   1.4    2.8  2  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.069   13.0   0.0       0.14   12.0   0.0    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold
        0.1   11.2   0.0       0.19   10.3   0.0    1.5  1  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   0.1   2.4e-75   6.1e-72      69     354 .]      10     340 ..       8     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 2.4e-75
                 STTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEEEEEEECTTS-EEEEEESSSSC-.....SS-EEEEEE--BTTS---EEEEEE CS
     DPPIV_N  69 elatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrlaylrfdeseVpeitlpsytdees.....qypevksikYPkaGsknpkVelkv 162
                 +++t++ i++Ts g+a+ fnGv+dWvyeEEv++s+ a+wWspd++++a+l +de++V+e+t+p y + e+      yp++  +kYPk+G +np V+++v
  CDO69707.1  10 KSETNSPIRVTSSGNASRFNGVPDWVYEEEVFSSDYALWWSPDATKIAFLHLDETAVDEYTYPVYNPTEDahtvvPYPNHVVMKYPKPGYNNPRVTVHV 108
                 5678899************************************************************9999**************************** PP

                 EEC....TTSCEE...................ECS-HHHHCTTCEEEEEEEECTTSCCEEEEEEETTSTEEEEEEEET.....TTCCEEEEE....EEE CS
     DPPIV_N 163 vdl....asgktv...................evqlpdslsekdeyitrvkWtsdeksllvqwlnRsqnrlkvvlvda.....etgravvkl....eet 229
                  +l    +    v                   e+  ++  + +d +i++v+W+s +  +lv+++ R  +  +vv +d      + g++v+kl    e+ 
  CDO69707.1 109 FQLdeyfD----VmrdlgddansteiaqgvtaELYWDGMYRLEDSIIAEVAWVSGDA-FLVREVTRAAEDGNVVYFDFrntfrNVGKVVRKLgkdgEQG 202
                 ***65550....4455555566667788888888888889999***********999.******************8865565667777777******* PP

                 SSS-SSS-S-EEE-.....TTTSSEEEEEEE.TTSSEEEEEEESSS-C.EEESS-SSS-EEE.EEEEETTTTEEEEEESSSETTEBEEEEEESS..... CS
     DPPIV_N 230 sdgWvelhdevhfl.....krdesgflwise.kdGfkHLylfdldgkseikqlTsGeweVts.ilavdekrdlvyFtatkdsPlerhlYsvsle..... 316
                 +dgW+++ + +h+l        +  +l+i++ ++G++H++lf+  + s+++ lT G+weVts ilavd++r+lvyF+a + s+++rh+Y+v l      
  CDO69707.1 203 DDGWIDPIQAIHPLppslaPDGQPAYLDIVPtSSGYNHIALFSPANFSTPRFLTFGDWEVTSgILAVDANRSLVYFQAANPSSTQRHIYAVPLPkldgq 301
                 ******************988999********************************************************************9999999 PP

                 CTTEEEESSTTTSEE.EEEEE-TTSSEEEEEEESSSSSE CS
     DPPIV_N 317 sggeltrltdeegdh.ysasfspsgkyyvlkysgpdtpp 354
                 +++e++ ltd++ ++ y+asfsp+g +y+l+y+gp  p+
  CDO69707.1 302 KPEEVKALTDTSSPGyYDASFSPEGGFYLLSYEGPHAPW 340
                 9***********************************997 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   0.8   4.3e-52   1.1e-48       2     210 ..     423     625 ..     421     627 .. 0.96

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 4.3e-52
                   ---HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE- CS
  Peptidase_S9   2 sfsselqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpv 98 
                   s++++++l++++ y+vvv+++rG+g +G++ ++ +k++lg +e  D+i aa+ +a+++yvd++r++i+G+SyGG+++  +++    + + a+a++pv
    CDO69707.1 423 SLDWHAYLVTELQYIVVVVDGRGTGFRGRTLRNPVKNNLGRWETVDQIYAAKLWAAKDYVDPKRIGIWGWSYGGFMSSKVVEADAGVHSLAMAVAPV 519
                   567********************************************************************************************** PP

                   --CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SSTTSSHHH CS
  Peptidase_S9  99 vdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgvgkprak 194
                   + ++ yds    +te+ym+ +++  n++gy   +++s+++  +  +++Ll hG  Dd+v++a++++l++ L+ +++  +++++f+d++H++++  a+
    CDO69707.1 520 TSWRLYDSI---YTERYMNLPAE--NPDGY-VTASISNVTG-FHHADFLLAHGSGDDNVHFANSAHLLDMLTAEKVRgFRFRMFTDSDHSIYRRGAN 609
                   *********...*******9987..*****.8888999888.679***************************999999******************* PP

                   HHHHHHHHHHHHHHCT CS
  Peptidase_S9 195 veelarllaFlkealg 210
                   +e ++ +++Fl+e+ g
    CDO69707.1 610 RELYEFMTEFLLEKWG 625
                   ***********99876 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.8   9.2e-09   2.4e-05      58     150 ..     436     535 ..     381     551 .. 0.72
   2 ?   -0.0   0.0      0.21   5.4e+02     228     258 ..     557     588 ..     540     602 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 9.2e-09
                    -EEEEEE-TTSTTS-S---TT.......TTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHH..CTT--TTEEEEEEECE-S-TCCCCSE CS
  Peptidase_S15  58 YavVvqdvrGtggSeGeftvg.......dsdeaedgadvidWlakqpwsnGkVgmtGiSYlGttqlla..aatgvpalkaivpeaaisdlyddyyr 144
                    Y+vVv+d+rGtg   G +           ++ ++  +++  W+ak      ++g +G SY+G+++  +  a  gv  l+++v+ ++ + lyd +++
     CDO69707.1 436 YIVVVVDGRGTGFR-GRTLRNpvknnlgRWETVDQIYAAKLWAAKDYVDPKRIGIWGWSYGGFMSSKVveADAGVHSLAMAVAPVTSWRLYD-SIY 529
                    ***********864.33222235888888999999999999***********************9776225567888888888888888898.666 PP

                    CTTEEB CS
  Peptidase_S15 145 egGlvr 150
                    +++ + 
     CDO69707.1 530 TERYMN 535
                    666555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.21
                    -S-EEEEEECCSSTTC.CHHHHHHHHHCCTT- CS
  Peptidase_S15 228 kapvllvgGwnDwnvk.ngaiklyealkapgv 258
                    +a+ ll++G  D+nv   ++ +l + l+a++v
     CDO69707.1 557 HADFLLAHGSGDDNVHfANSAHLLDMLTAEKV 588
                    68899***********9******999999987 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   3.5e-07   0.00089       2     115 ..     405     524 ..     404     610 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.5e-07
                    EEEEE-STTT........CGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.....CHHSHHHHHHHHH.HH.HHHCTTSSEEEEEETH CS
  Abhydrolase_1   2 vlvilhGlpg........ssdvwaerglapaLakd.gfdvillDlrGvgySspapacin....ddygtasvaddld.ri.ldalgddkltlvGhSm 82 
                    vl  + G+pg        s+d w++     +L  + ++ v+++D rG g+  + ++ ++     +++t++     + ++ +d  + +++ ++G+S+
     CDO69707.1 405 VLFRVYGGPGsqmvdtrfSLD-WHA-----YLVTElQYIVVVVDGRGTGFRGRTLRNPVknnlGRWETVDQIYAAKlWAaKDYVDPKRIGIWGWSY 494
                    556678888855333322222.444.....3433349************9999999888966655566555555557556**************** PP

                    HHHHHHHHHHHHGGGEEEEEEESECSSCCHHHH CS
  Abhydrolase_1  83 GGmialayaaeyperVkalvllgaidpaaslie 115
                    GG++++ + +  +  V++l++  a  p  s++ 
     CDO69707.1 495 GGFMSSKVVEA-DAGVHSLAMAVA--PVTSWRL 524
                    ******99996.566777776666..5555554 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.8      0.48   1.2e+03      72      72 ..     234     234 ..     155     379 .. 0.45
   2 !   19.2   1.4   5.9e-07    0.0015      11     105 ..     423     530 ..     411     584 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.48
                    E CS
  Abhydrolase_6  72 H 72 
                     
     CDO69707.1 234 T 234
                    2 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 5.9e-07
                    ...G..C.HHHHHHHHCCTCEEEEE--TTST...S-GGCS.....--HHHCHHH.HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6  11 assW..l.vapLaallaagvhvlapDlpGhG...rsdppp.....ldledladl.aalldelaa.....gggpvvlvGHSlGGalalaaapla.lv 88 
                    + +W  + v++L      ++ v+++D +G+G   r+ + p       +e ++++ a   ++l a     +++++ ++G+S+GG++++ ++ +   v
     CDO69707.1 423 SLDWhaYlVTEL------QYIVVVVDGRGTGfrgRTLRNPvknnlGRWETVDQIyA---AKLWAakdyvDPKRIGIWGWSYGGFMSSKVVEADaGV 509
                    556732135566......55559*******84334433334433344433444443...33333445789999***********888855555444 PP

                    EE..EEES-..----TTT.....S CS
  Abhydrolase_6  89 vg..vlldppptalpagl.....l 105
                    ++   +++p   ++ ++l      
     CDO69707.1 510 HSlaMAVAP---VTSWRLydsiyT 530
                    444455555...444433222221 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.6e-05      0.14      49     111 ..     467     521 ..     464     575 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SS CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtd 111
                    v++++aa  w+a+      +dp+ri + G S GG ++  v+ + +       +  + + Pvt 
     CDO69707.1 467 VDQIYAAKLWAAKD----YVDPKRIGIWGWSYGGFMSSKVVEADAG----VHSLAMAVAPVTS 521
                    68888999999988....8******************999833222....3455555566554 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   7.5e-05      0.19     155     189 ..     466     500 ..     419     523 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHH CS
        AXE1 155 flDavrlveivaslpevDeeRvavlGasqGGalal 189
                  +D + ++++ a+ + vD++R+++ G+s GG ++ 
  CDO69707.1 466 TVDQIYAAKLWAAKDYVDPKRIGIWGWSYGGFMSS 500
                 578999999999*******************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4124.87
//
Query:       CDO69708.1  [L=182]
Description: hypothetical protein BN946_scf184851.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1238.82
//
Query:       CDO69709.1  [L=784]
Description: hypothetical protein BN946_scf184851.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-94  316.2   0.1    6.5e-94  314.3   0.0    1.9  2  Dynamin_M  Dynamin central region
    2.6e-54  183.8   0.0    4.9e-54  182.9   0.0    1.5  1  Dynamin_N  Dynamin family
    7.7e-30  102.9   1.1      7e-29   99.8   0.7    2.3  2  GED        Dynamin GTPase effector domain
     0.0009   19.3   0.0     0.0072   16.4   0.0    2.4  2  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
        8.3    6.2   6.6         16    5.3   6.6    1.4  1  SPX        SPX domain


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.3   0.0   1.8e-97   6.5e-94       1     241 [.     222     466 ..     222     476 .. 0.96
   2 ?   -1.4   0.0       0.3   1.1e+03     192     213 ..     703     730 ..     679     742 .. 0.64

  Alignments for each domain:
  == domain 1  score: 314.3 bits;  conditional E-value: 1.8e-97
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 ++dil+++v+pLklG++gVvnRsq+dIn++ks+++al++E++FF++hpayr++a+k Gt+yLak+Lnq+L++hIr++lP++k+++n+++ ++++el+++
  CDO69709.1 222 ALDILTGRVYPLKLGFIGVVNRSQADINAEKSLQDALEAEAEFFRTHPAYRNIAHKNGTRYLAKTLNQVLMNHIRDKLPDMKARLNTLMGQAQQELNSF 320
                 68************************************************************************************************* PP

   Dynamin_M 100 g.eskpsde.ektklllqlitkfkedfkklieGese.vstkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFeal 195
                 g   +  d+ +++ l+l+l+t+f++df ++ieG+s  +stkelsggari++iFn++++++l++id++++l +++irtairns+G++++lfvpe aF+ l
  CDO69709.1 321 GdAAIYGDKnQQGGLILRLMTQFARDFVASIEGTSVdISTKELSGGARIYYIFNDVFGQALQSIDATHNLDNQDIRTAIRNSTGPRPSLFVPEIAFDLL 419
                 *7444555579**********************955588************************************************************ PP

   Dynamin_M 196 vkkqikkleepalkcvelVyeelekiveklek.elkrFpnLreeike 241
                 vk+qik le+p+l+cvelVyeel ki++++++ el+rFp+L++++ e
  CDO69709.1 420 VKPQIKLLEAPSLRCVELVYEELVKICHNCTSaELQRFPRLHAQLVE 466
                 *****************************9999**********9977 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.3
   Dynamin_M 192 Fealvkkqikkleepalkcv......el 213
                 + ++v++ i++l + a+ ++      ++
  CDO69709.1 703 YFNIVRQTIQDLVPKAIMHLlvnntsQQ 730
                 3456666666666666665544333333 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9   0.0   1.4e-57   4.9e-54       4     167 ..      35     212 ..      33     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.9 bits;  conditional E-value: 1.4e-57
                 EEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SS.EEEE...T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEET CS
   Dynamin_N   4 vGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkee.lkek...ekkledfsevreeieketekiagankgiskkvillkilsl 98 
                 vGsqS+GKSSvl+ ++g+d+lprg++++Trrpl+lql +++  ++ +++++ ++++    k+++df+e+r+eie+et ++ag+nkgisk +i+l+i+s+
  CDO69709.1  35 VGSQSAGKSSVLETIVGRDFLPRGSGIVTRRPLVLQLIHTPVPETPTQTYTeWGQFlhiDKRFTDFNEIRREIEQETFRVAGQNKGISKLPIHLRIYSP 133
                 9**************************************99988555555516666******************************************* PP

                 TS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  99 lvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 +v +ltlvDlPGl++++++dq         +lv  yi k++++ilav++an+dl+nseal+lar+vdp+g+rti+vltk
  CDO69709.1 134 NVLDLTLVDLPGLTKIPVGDQpsdierqirSLVLDYIsKPNCVILAVSAANVDLANSEALKLARQVDPQGRRTIGVLTK 212
                 ******************************************************************************9 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.16   5.9e+02      15      45 ..     270     300 ..     260     317 .. 0.86
   2 !   99.8   0.7   1.9e-32     7e-29       1      92 []     688     779 ..     688     779 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHTHHHHCCCC CS
         GED  15 sYfnivrktiadqiPkaimhllvneakeslq 45 
                 +Y ni++k+      k+   +l+n+++++l 
  CDO69709.1 270 AYRNIAHKNGTRYLAKTLNQVLMNHIRDKLP 300
                 899***********************99985 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 1.9e-32
                 XXXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCHH CS
         GED   1 reeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreilsev 92 
                 ree+e++ irsl++sYfnivr+ti+d +Pkaimhllvn++++++q++l+a+Ly+ e + +LL+Ede+++++R ++k  l+a++ A ++lsev
  CDO69709.1 688 REEMETNLIRSLIQSYFNIVRQTIQDLVPKAIMHLLVNNTSQQVQNRLVASLYRPELFGDLLNEDEALVAERARVKALLDAYRDAFKTLSEV 779
                 689**************************************************************************************986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0072       5     103 ..      35     198 ..      32     212 .. 0.70
   2 ?   -3.1   0.0       2.3   8.3e+03      19      48 ..     339     369 ..     335     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                 EESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE........................................................ CS
    MMR_HSR1   5 vGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke........................................................ 47 
                 vG   +GKS+++ +++g+         +Tr +   ++ +   +                                                        
  CDO69709.1  35 VGSQSAGKSSVLETIVGRDFLPRGSGIVTRRPLVLQLIHT--Pvpetptqtytewgqflhidkrftdfneirreieqetfrvagqnkgisklpihlriy 131
                 899**************99999999999999988887622..2235667788888889999999999999999999999999999************** PP

                 ......EEEEECGGCSS......HHHHHHHHHHHHHH.....HHCTSEEEEEEETTTTCSHHHHHHHHHHHHH CS
    MMR_HSR1  48 ......ielvDtpGlie......gaseekglgkafla.....leeadlillvvdaseeklkpldeeleellee 103
                       ++lvD+pGl +            ++++++++     + + + ++l v+a+  +++  ++e  +l ++
  CDO69709.1 132 spnvldLTLVDLPGLTKipvgdqP----SDIERQIRSlvldyISKPNCVILAVSAA--NVDLANSEALKLARQ 198
                 *****9********8433332221....2333333332222223356677777655..244444455554444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
                 HHTS..TEEESSSTTSSSSEEEEEEEETTEEE CS
    MMR_HSR1  19 ltge..kaivsdkpgtTrdinegrvklkgkei 48 
                 l+ +  +  v+++ gt  di +++++ +g +i
  CDO69709.1 339 LMTQfaRDFVASIEGTSVDISTKELS-GGARI 369
                 44443466889999999999998887.33333 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.6    0.0045        16      62     144 ..     501     596 ..     471     701 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0045
         SPX  62 e.rtepstsaaadesgnsaadasssepkdeae.................slprrsplsrssrssssygglvssppsansssssddssesnpadssssss 142
                 + + eps++a++d+ + + ++++ +e+ de++                 +++r    s       + g++++++ s++s++++++++ s       s +
  CDO69709.1 501 HkHIEPSQPASSDSINGAPSQDDDDESTDEPTlngtsgrdarsvsstihDRSRAGAASAPPAGAGTVGSSSHRHQSPRSHHHHSSRHVSG-----ASGT 594
                 246667777777777777777777777777778885555555555555555555555555555555666666666666655555555555.....3333 PP

         SPX 143 ss 144
                 + 
  CDO69709.1 595 AI 596
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5224.76
//
Query:       CDO69710.1  [L=686]
Description: hypothetical protein BN946_scf184851.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-18   66.1   6.2    4.9e-18   65.8   0.2    3.3  2  BCS1_N           BCS1 N terminal
    1.1e-14   55.0   0.0      3e-13   50.4   0.0    2.6  1  AAA              ATPase family associated with various cellul
     0.0023   18.4   0.1     0.0023   18.4   0.1    3.3  2  AAA_16           AAA ATPase domain
     0.0038   17.0   8.4        2.9    7.6   9.0    2.4  2  AAA_11           AAA domain
     0.0055   16.9   0.0     0.0055   16.9   0.0    2.4  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.011   15.5   1.8      0.012   15.4   0.0    2.0  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.03   13.9  15.9        3.7    7.1  19.9    2.3  2  DDRGK            DDRGK domain
      0.054   14.0   0.0       0.16   12.5   0.0    1.7  1  YlbE             YlbE-like protein
      0.055   13.2   0.0        0.1   12.3   0.0    1.3  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.083   11.8   7.6       0.13   11.2   7.6    1.3  1  XRN_M            Xrn1 helical domain
      0.099   12.6   0.1       0.31   10.9   0.1    1.9  1  NACHT            NACHT domain
       0.16   12.2   0.0       0.52   10.6   0.0    1.9  1  AAA_22           AAA domain
       0.18   11.7   0.0       0.36   10.7   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
       0.22   11.0   0.0       0.49    9.9   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
       0.29   10.2   3.9         19    4.3   0.0    2.3  2  CAF1             CAF1 family ribonuclease
        0.3   10.8  31.6       0.76    9.5  31.6    1.6  1  CAF-1_p150       Chromatin assembly factor 1 complex p150 sub
       0.49   10.9   0.0       0.49   10.9   0.0    3.0  2  AAA_18           AAA domain
          4    5.8  10.4        5.7    5.3  10.4    1.2  1  TMEM214          TMEM214, C-terminal, caspase 4 activator
        4.8    7.6  17.7         12    6.3  12.3    2.8  3  AAA_23           AAA domain
        9.4    4.9  14.8         28    3.3  14.8    1.9  1  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.2   5.5e-21   4.9e-18       1     187 []      27     219 ..      27     219 .. 0.79
   2 ?   -1.3   1.4       2.1   1.9e+03      39      76 ..     515     552 ..     509     590 .. 0.43

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 5.5e-21
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaqpasrrsrelsvetrtksrssdssaeedededeee....dg.kkkkplrylPav 94 
                 +g+++++arr++ ++++ + ++f++++++s++D  yd       +  +++rs + +  t+++s + ++++e+de+    +    +g  +k+++  +P++
  CDO69710.1  27 IGGTVETARRASVSAWNGFIDSFFLTAHFSQEDYPYDCR-----EFDITTRSVNRHGLTQKTSGDLEEENEDDEE----SaefsQGgGRKRKVAIVPSM 116
                 6899********************************963.....3334444433333355444443333222222....122343367788******** PP

      BCS1_N  95 gtthlfrykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraa.....................agsgge 172
                 g++ +      +l++tR++  + +d    + + +l++++++r+++ilk+L+ ea+++++k+ e+++ i+ a                       +++g 
  CDO69710.1 117 GKSAI------ILRITRTK--RFQD---YGSCAELKISVVARNNDILKRLVLEAKREYEKDAEHRVHIFMADtyvihpsspwsnadmllfpylLSTYGC 204
                 *8444......69999999..3444...3469*************************************988999*****************97789** PP

      BCS1_N 173 WrrvasRpkRplstV 187
                 Wr+ ++R+kRp+s++
  CDO69710.1 205 WRWNGARQKRPMSSI 219
                 **************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
      BCS1_N  39 vlaWlsaqpasrrsrelsvetrtksrssdssaee..dede 76 
                 v aW+ +++ +r+  + + e r  +++++++++   +  +
  CDO69710.1 515 VAAWVVSERETREKMKKEKEEREAKEKKEAEEKAkkE--K 552
                 5566655543333322222222222221111111111..1 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   3.3e-16     3e-13       2     130 ..     255     400 ..     254     402 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 3.3e-16
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.........................T CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.........................s 75 
                 ll+G pG GKT+l++++a elg +++ +s+s+        s + +  l+ ++   +  +il+++++da +++                          +
  CDO69710.1 255 LLHGVPGSGKTSLIHSLAGELGLDIYVVSLSSKG-----MSDNTLTTLMGNVP--S-RCILLLEDLDAAFTRGisrdetstgtplssssssssssspkN 345
                 9*********************999999998888.....56777788887753..3.5*************999999**********999999988866 PP

                 TCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  76 gseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 +++++ ++  ++ Ll+ ldgv   e+  ++ ++tn++++ldpal r gR+d+ +++
  CDO69710.1 346 KDDNDGSTLSLSGLLNSLDGVAAAEG-RLLFATTNHIERLDPALSRpGRMDVWVNF 400
                 6677777788999********99877.9999********************98776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.53   4.7e+02      32      46 ..     113     127 ..      31     172 .. 0.56
   2 !   18.4   0.1   2.5e-06    0.0023      24      60 ..     249     288 ..     243     387 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.53
      AAA_16  32 esGvGKsslvrellr 46 
                  + +GKs+++ ++ r
  CDO69710.1 113 VPSMGKSAIILRITR 127
                 345555555544443 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.5e-06
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggif..lrgkc 60 
                 p  +  ll+G +G+GK+sl+ +l+ +l  d +++  l+ k 
  CDO69710.1 249 PfrRGYLLHGVPGSGKTSLIHSLAGELGLD-IYVvsLSSKG 288
                 455789******************999999.6663344444 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0077       6.9      20      42 ..     254     276 ..     238     326 .. 0.78
   2 !    7.6   9.0    0.0033       2.9      48     176 ..     457     581 ..     420     603 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0077
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                  l++G PG+gKT+ i +l  +l 
  CDO69710.1 254 YLLHGVPGSGKTSLIHSLAGELG 276
                 699************99998874 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0033
      AAA_11  48 eeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeriseavksvsleekvekrlek....eekaqlakeiskeleklakelra 142
                 +e+k++ + + + a S+  + +l++r  + + ++e ++  ++   + n+  r++e v +v  +   e++ ++    e++ + ake+++++ek +ke ++
  CDO69710.1 457 AESKRKRAAHAIPALSEEEISDLAKRFGDAIPENELSVAALQGYLLKNKT-RPRECVDEVAAWVVSERETREkmkkEKEEREAKEKKEAEEKAKKEKEE 554
                 55556666666666666666666666666555666666666666666666.555555555544444444433000032222222222222222222222 PP

      AAA_11 143 feeeeekeklkkskekskskleqerrklkkerke 176
                        +++k+++ek++++ +++r++l++++k 
  CDO69710.1 555 -------KATKEKAEKKEARVKAKRNALREASKA 581
                 .......233333333333333344444433332 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.1e-06    0.0055       3      29 ..     255     285 ..     254     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-06
      AAA_33   3 llvGlpGsGKstlaerllkklg...avl.ls 29 
                 ll+G+pGsGK+ l+++l+ +lg   +v+ ls
  CDO69710.1 255 LLHGVPGSGKTSLIHSLAGELGldiYVVsLS 285
                 69********************996333244 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.3e-05     0.012       2      22 ..     255     275 ..     254     293 .. 0.82
   2 ?   -3.3   0.4       6.6     6e+03     144     178 ..     525     559 ..     507     583 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts 22 
                      + hGvpG+GK++li +l+ + 
       CDO69710.1 255 LLHGVPGSGKTSLIHSLAGEL 275
                      57**************99874 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.6
  Viral_helicase1 144 teveversgelkvetepkgqekvlvyltftqalke 178
                      t+ + ++++e + + e k+ e++++ +++ +a+ke
       CDO69710.1 525 TREKMKKEKEEREAKEKKEAEEKAKKEKEEKATKE 559
                      44444444444222222222233333333333333 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   1.2e+03     141     174 ..     361     394 ..     358     400 .. 0.91
   2 ?    7.1  19.9    0.0041       3.7      27      72 ..     522     565 ..     505     599 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
                 SSS-EEE-TT--EEE---XXXXXXXXXXXXXXXX CS
       DDRGK 141 gsltGvlDdrGkyiyitdeEleavakyikkkGrv 174
                 +sl Gv    G+ ++ t + +e +   + + Gr+
  CDO69710.1 361 NSLDGVAAAEGRLLFATTNHIERLDPALSRPGRM 394
                 68999999******************99999998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0041
                 XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK  27 ereerkkleekree.erkekeekeeekekkkeeeerkkeeekerkeq 72 
                 ere r+k+++++ee e kek+e+ee+++k+kee+  k+++ek+   +
  CDO69710.1 522 ERETREKMKKEKEErEAKEKKEAEEKAKKEKEEKATKEKAEKK---E 565
                 4444444433331102222222222222222222222222111...1 PP

>> YlbE  YlbE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00017      0.16      18      46 ..     146     174 ..     144     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00017
        YlbE  18 nRnpeelkelekemkekYkktipdkveki 46 
                 +Rn++ lk l  e+k++Y+k ++++v  +
  CDO69710.1 146 ARNNDILKRLVLEAKREYEKDAEHRVHIF 174
                 6*************************866 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011       0.1      37      91 ..     255     310 ..     250     315 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvle.kagdlaalltnleekdvlfid 91 
                 ll+G PG Gkt+l + +a elg ++ + s        + l++l+ n+ ++ +l+++
  CDO69710.1 255 LLHGVPGSGKTSLIHSLAGELGLDIYVVSLSSKGmSDNTLTTLMGNVPSRCILLLE 310
                 89**********************99988554430345567777777776666665 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.6   0.00015      0.13      47     169 ..     494     614 ..     473     635 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
       XRN_M  47 lkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaeaeaeakaeke 145
                 + +l+gyl++n++   + v+++ + v +  e+  + +ke+e+r++k++++ ee++k+++++++++ + ++++e++v+ + +a  ++ ++a+a+a+ +++
  CDO69710.1 494 VAALQGYLLKNKTRPRECVDEVAAWVVSERETREKMKKEKEEREAKEKKEAEEKAKKEKEEKATKEK-AEKKEARVKAKRNAL-REASKASAAASPTES 590
                 56899******99988999888888776655544444444444444333333333333332222222.222233333222222.223344444455555 PP

       XRN_M 146 krekaekeleeseeeeeeeDkvrL 169
                   ++a + +++++  e + D + L
  CDO69710.1 591 GSSTAIEGNSSDSAPETPADSLTL 614
                 555566666666666666666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00034      0.31       4      24 ..     255     275 ..     252     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
                 EEEC-TTTCHHHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklalaw 24 
                 +l+G +GsGKT L+++la ++
  CDO69710.1 255 LLHGVPGSGKTSLIHSLAGEL 275
                 79**************99765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00058      0.52       8      60 ..     254     297 ..     251     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00058
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60 
                  +++G +G+GKT l+  l+ +l         + +++ v l+s++ s++ l+ l
  CDO69710.1 254 YLLHGVPGSGKTSLIHSLAGEL---------GLDIYVVSLSSKGMSDNTLTTL 297
                 589***************9999.........7777777777777444444444 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004      0.36       3      34 ..     255     286 ..     253     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftp 34 
                 ll+gvPG +kt l+++la  l+l++  + + +
  CDO69710.1 255 LLHGVPGSGKTSLIHSLAGELGLDIYVVSLSS 286
                 89********************9988777665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00054      0.49      33      86 ..     251     301 ..     238     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00054
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiieskl 86 
                 ++  ll G  G+GKt++i++l  +l    + + ++++s++  + ++ ++++ ++
  CDO69710.1 251 RRGYLLHGVPGSGKTSLIHSLAGELG---LDIYVVSLSSKGMSDNTLTTLMGNV 301
                 67789*******************99...8888899999999999999998877 PP

>> CAF1  CAF1 family ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        19     206     238 ..      36      69 ..       4      77 .. 0.84
   2 ?    3.9   3.7     0.028        25     137     174 ..     526     566 ..     460     667 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.021
                 --EEEESSTHHHHHHHHHHHT--.--SSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        CAF1 206 rkpiVgHNgllDllflyqtfyae.LPesleeFka 238
                 r  +   Ng++D +fl  +f +e  P +++eF  
  CDO69710.1  36 RASVSAWNGFIDSFFLTAHFSQEdYPYDCREFDI 69 
                 5667789*************8777*******975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.028
                 HCH----...-.....--------TTC.HHHHHH-S.HHHH CS
                 xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1 137 kerleer...keekekskenvkivsdedkefveekskeeee 174
                 +e+++++   +e+kek++++ k+++++++++++ek +++e+
  CDO69710.1 526 REKMKKEkeeREAKEKKEAEEKAKKEKEEKATKEKAEKKEA 566
                 22232221111111111112222222222222221111111 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  31.6   0.00085      0.76      45     100 ..     522     575 ..     498     584 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00085
  CAF-1_p150  45 kkeekerakeea.rrkkeeekekkekerrekkekdekekaeklrlkeekrkekleal 100
                 ++e++e++k e+ +r+ +e+ke +ek ++ek ek  kekaek  ++ +    k +al
  CDO69710.1 522 ERETREKMKKEKeEREAKEKKEAEEKAKKEKEEKATKEKAEKKEARVK---AKRNAL 575
                 345555655443157777888888888888888888888887655433...333332 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.7   2.4e+03      96     123 ..     136     168 ..     116     174 .. 0.73
   2 ?   10.9   0.0   0.00055      0.49       3      25 ..     256     281 ..     255     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.7
      AAA_18  96 k.....vvLtaspeelleRlekRgyeeakiken 123
                       + + a+++  l+Rl    ++e ++  +
  CDO69710.1 136 ScaelkISVVARNNDILKRLVLEAKREYEKDAE 168
                 345555999999999999999998888876544 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00055
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...g 25 
                 l G+pG+GKt+l + L+ +lg+   +
  CDO69710.1 256 LHGVPGSGKTSLIHSLAGELGLdiyV 281
                 78**************9998774441 PP

>> TMEM214  TMEM214, C-terminal, caspase 4 activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  10.4    0.0064       5.7      54     109 ..     527     577 ..     452     587 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0064
     TMEM214  54 ekenkkqnkeqvpekstseaeekkksnkkkkkkksekkkeepkekkpktledAlka 109
                 ek+  k++ke+ ++k+ +eaeek    kk+k++k++k+k+e+ke+++k  ++Al++
  CDO69710.1 527 EKM--KKEKEEREAKEKKEAEEKA---KKEKEEKATKEKAEKKEARVKAKRNALRE 577
                 223..3334444444334444333...44445556667777777777777777664 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       3.9   3.5e+03     108     123 ..      87     102 ..      47     169 .. 0.45
   2 ?    3.2   0.0      0.12   1.1e+02      22      39 ..     254     271 ..     243     277 .. 0.84
   3 ?    6.3  12.3     0.013        12     139     197 ..     520     580 ..     458     582 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.9
      AAA_23 108 klelleideleqfise 123
                  +e+ e+de   ++s+
  CDO69710.1  87 LEEENEDDEESAEFSQ 102
                 2222222222222222 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
      AAA_23  22 tlItGpNGaGKTTildAi 39 
                 +l++G  G+GKT+++  +
  CDO69710.1 254 YLLHGVPGSGKTSLIHSL 271
                 4899999*******9766 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.013
      AAA_23 139 gqerfeefelkdkkerleelekeleeledekkllekl..eqekekekeleeleeeleeilk 197
                  +er+ +++ k++ke+ e+ ek+  e++++k++ ek   e++++ke++ ++++++l e+ k
  CDO69710.1 520 VSERETREKMKKEKEEREAKEKKEAEEKAKKEKEEKAtkEKAEKKEARVKAKRNALREASK 580
                 4566666677777776666666665555555555555448888899999999999998765 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  14.8     0.032        28     228     271 ..     523     601 ..     497     661 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.032
  Presenilin 228 kkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse...................................s 271
                 +++++++++e+ee+e+k+++++e+++++e+ee++++++a+++e                                   s
  CDO69710.1 523 RETREKMKKEKEEREAKEKKEAEEKAKKEKEEKATKEKAEKKEarvkakrnalreaskasaaasptesgsstaiegnsS 601
                 2333333333333333333333333333333333333333322223333333333333333333333333222222210 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2806  (0.156506); expected 358.6 (0.02)
Passed bias filter:                     1072  (0.0597914); expected 358.6 (0.02)
Passed Vit filter:                       363  (0.0202465); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.45u 0.40s 00:00:01.85 Elapsed: 00:00:00.52
# Mc/sec: 3996.61
//
Query:       CDO69711.1  [L=208]
Description: hypothetical protein BN946_scf184851.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-20   71.7   2.0    6.5e-18   65.3   1.8    2.0  2  SYS1      Integral membrane protein S linking to the trans Go


Domain annotation for each model (and alignments):
>> SYS1  Integral membrane protein S linking to the trans Golgi network
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0014        24       3      33 ..       4      34 ..       2      66 .. 0.66
   2 !   65.3   1.8   3.6e-22   6.5e-18      50     141 ..      94     185 ..      75     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0014
        SYS1  3 aaeldPlkilsqivllqlayYliaavlillt 33
                ++ +dP++i+ q ++ +++  li  +l+++ 
  CDO69711.1  4 STGWDPVLIVAQTLHYVTLSVLIPPLLVMFA 34
                67899**999998887776666666555554 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 3.6e-22
        SYS1  50 esldvddtsgrllilvwvlnslvvvlallllveRsKlalDFalTihvihlvvvslytralPaslaWwllqvlsaaimivlgeylcrrrelke 141
                 +  ++d    ++++++wv  s + v++l +lv+R +l+lDF+lT+ + hlv++++y  a+P+s+  w+++++s+ ++++ +e lc +re+ e
  CDO69711.1  94 DLRQIDPVRCWIIAICWVAASAADVYYLYALVRRPRLILDFSLTLLFNHLVLTTYYAAAIPTSIFFWIVMAVSTGLTVTSAEQLCVKREMSE 185
                 5556777889*******************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1433.05
//
Query:       CDO69712.1  [L=184]
Description: hypothetical protein BN946_scf184851.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1320.31
//
Query:       CDO69713.1  [L=369]
Description: hypothetical protein BN946_scf184851.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00033   20.7  11.2    0.00066   19.7  11.2    1.5  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7  11.2   3.7e-08   0.00066       6      38 .]     215     255 ..     206     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.7e-08
                 -.....B-SCE-.TTT...S-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   6 k....aealkkC.agC...ksvfYCskeCqradwksHkteC 38 
                      +++lk+C + C   k+ +YCs  Cqr +w +H++ C
  CDO69713.1 215 IqtftKHSLKRCgGDCppdKKPYYCSLYCQRIHWVYHREFC 255
                 25555677889944589999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2758.90
//
Query:       CDO69714.1  [L=1013]
Description: hypothetical protein BN946_scf184851.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-46  157.4   0.0    8.1e-44  149.7   0.0    2.7  2  AAA_2            AAA domain (Cdc48 subfamily)
    2.3e-33  114.2   0.5    2.3e-33  114.2   0.5    2.9  2  AAA_lid_9        AAA lid domain
    4.6e-20   72.4   1.1    1.3e-10   41.8   0.0    2.9  2  AAA              ATPase family associated with various cellul
    1.2e-18   67.0   0.2    1.2e-18   67.0   0.2    2.5  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.3e-16   60.9   0.0    8.8e-11   42.0   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
    1.7e-09   38.3  11.0    5.4e-05   23.6   0.0    5.0  4  AAA_16           AAA ATPase domain
    3.8e-09   36.9   1.3     0.0018   18.6   0.0    3.8  2  AAA_22           AAA domain
    1.5e-08   34.6   0.0    4.1e-08   33.2   0.0    1.8  1  DnaJ             DnaJ domain
    7.7e-08   32.2   0.0    5.4e-06   26.2   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    3.4e-06   26.9   0.4       0.11   12.2   0.0    3.4  3  IstB_IS21        IstB-like ATP binding protein
    4.2e-06   27.3   0.4       0.12   12.9   0.0    3.3  2  AAA_18           AAA domain
    6.6e-06   25.7   0.2       0.18   11.2   0.0    3.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    9.6e-06   25.9   3.6        0.3   11.3   0.0    5.2  5  AAA_28           AAA domain
    1.7e-05   24.9   0.0      0.056   13.5   0.0    2.6  2  AAA_14           AAA domain
    1.8e-05   24.4   0.0       0.05   13.1   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
    2.2e-05   24.3   0.3      0.046   13.4   0.0    2.7  2  AAA_24           AAA domain
    0.00011   21.9   2.5       0.92    9.2   0.0    3.9  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00013   22.5   5.0       0.19   12.3   0.0    3.9  3  ABC_tran         ABC transporter
    0.00047   20.5   0.0        1.7    9.1   0.0    2.6  2  RNA_helicase     RNA helicase
    0.00054   20.2   0.0       0.94    9.7   0.0    2.7  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0012   18.7   1.5        1.9    8.3   0.0    2.9  2  RsgA_GTPase      RsgA GTPase
     0.0016   18.4  10.3       0.17   11.8   0.0    4.6  5  ATPase_2         ATPase domain predominantly from Archaea
     0.0038   16.9   0.0        2.7    7.8   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0067   16.4   0.0        6.8    6.7   0.0    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0069   16.3   0.1        0.9    9.4   0.0    3.1  3  NACHT            NACHT domain
     0.0097   16.3   0.1       0.32   11.3   0.0    2.7  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.011   15.6   0.0        4.9    6.9   0.0    2.7  2  Bac_DnaA         Bacterial dnaA  protein
      0.013   15.5   0.2          6    6.7   0.0    3.6  2  NTPase_1         NTPase
      0.017   14.8   0.0        1.8    8.1   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
      0.017   14.9   7.4        2.8    7.7   0.0    3.9  4  AAA_11           AAA domain
      0.035   14.1   0.2         18    5.3   0.0    3.3  3  ResIII           Type III restriction enzyme, res subunit
      0.039   13.7   0.3        2.5    7.8   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.065   12.8   1.4        3.7    7.1   0.0    3.5  2  AAA_25           AAA domain
      0.066   12.9   3.8       0.75    9.5   0.0    3.4  2  AAA_30           AAA domain
      0.066   13.0   0.2        0.7    9.7   0.0    2.6  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.072   12.9   3.2        5.9    6.6   0.0    3.7  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.081   12.6   1.1         37    3.8   0.3    3.1  3  AAA_15           AAA ATPase domain
      0.087   12.7   1.2        1.9    8.5   0.6    3.2  2  Pox_A_type_inc   Viral A-type inclusion protein repeat
      0.089   12.7   0.0         31    4.5   0.0    3.2  3  AAA_3            ATPase family associated with various cellul
       0.14   11.9   0.0        1.7    8.4   0.0    2.4  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.21   11.7   1.0         28    4.8   0.0    3.5  3  MMR_HSR1         50S ribosome-binding GTPase
       0.22   12.0   0.0       0.22   12.0   0.0    4.3  2  AAA_23           AAA domain
        1.5    8.9  11.6        6.9    6.7  10.8    2.1  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
        2.9    8.0   0.0        2.9    8.0   0.0    3.8  2  AAA_33           AAA domain
        5.7    5.9   7.9         12    4.9   7.9    1.5  1  Atg14            Vacuolar sorting 38 and autophagy-related su
        5.9    7.3   8.5         17    5.8   0.0    3.7  2  AAA_17           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.069        27       3      76 ..     116     196 ..     114     201 .. 0.66
   2 !  149.7   0.0   2.1e-46   8.1e-44       1     170 [.     519     688 ..     519     689 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.069
                 ---EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.EEEEET CS
       AAA_2   3 iisilllgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDE 76 
                 +++  l+gp gvGkt + + la+ + +       ++k++  +d  +++ +  ++   ++   a   +++ e g  i ++DE
  CDO69714.1 116 KSNPVLIGPPGVGKTAILEGLAQRIVAkevpesLQNKRVLSIDLAAIMAGSGIRGQFEEKFKALIKDIEDEAGNvICFIDE 196
                 677889**********66666666544555555557888888888888866666666555555555555444444556676 PP

  == domain 2  score: 149.7 bits;  conditional E-value: 2.1e-46
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rp++s+l+lgptgvGktel kala +lf ++++ li +++se+      +h++srliga+pgyvg+eegG            ++llDE++K+h+     
  CDO69714.1 519 RPVASFLFLGPTGVGKTELCKALAAFLFNDESRGLININMSEYHD----RHTISRLIGAAPGYVGFEEGGqlteavrrkpyaVILLDELEKAHK----- 608
                 6899************************9999*************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S...TTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk...eeeeekkkeeveeelkkglipEllgRlpe 170
                       +V  +LLqil++g +td+qgrkvd+kn+++ +t+++gs+  + ++ s+      + ++++ev e+  +++ pEll+Rl+ 
  CDO69714.1 609 ------DVAMILLQILDEGSITDSQGRKVDFKNTIICLTSNLGSDILAHTTASDpvtGVVTPEARDEVLERTAEYFPPELLNRLDS 688
                 ......*****************************************9977777998788889999999***************96 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.5   5.9e-36   2.3e-33       1      99 [.     258     357 ..     258     368 .. 0.91
   2 ?    5.0   1.3     0.056        22      64     101 ..     381     418 ..     370     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 5.9e-36
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeee.kekae 98 
                 ++e ti+iLrglk++ye hHgv isd al++a+  S+rYisdr+lPdkAIDl+Deaa+++rl++eskp+ele+l++e+ +le e+e+l++e++ +++++
  CDO69714.1 258 TVEATISILRGLKPRYEVHHGVGISDGALVTAAVYSSRYISDRYLPDKAIDLVDEAASALRLAQESKPDELEALDREIMTLEIERESLKNETDvFSNER 356
                 5799**************************************************************************************999633332 PP

   AAA_lid_9  99 r 99 
                 r
  CDO69714.1 357 R 357
                 2 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.056
   AAA_lid_9  64 keskpeeleklekelaklekekealekeeekekaerlk 101
                 ++++ +++++l+++l++ ++e e ++++ ++eka+rl+
  CDO69714.1 381 ERARLDKIKDLKQKLEEAKRELEIAQRQGQYEKASRLR 418
                 455667899***********************999986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.4e-13   1.3e-10       2      89 ..     120     220 ..     119     230 .. 0.81
   2 !   28.3   0.0     5e-09     2e-06       2     111 ..     525     644 ..     524     654 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.4e-13
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvn 87 
                 +l+GppG+GKT++ + +a+ +          + ++l+i+++ ++  s + g+ e+k+++l+k+++ +a+ +i fiDE++ l++    +++ + ++ + +
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIvakevpeslqNKRVLSIDLAAIMagSGIRGQFEEKFKALIKDIEDEAGNVICFIDELHTLFNLGkAEGSIDAGQMIKP 218
                 599*****************755555555556889999999999655599*****************977***********998844445555555555 PP

                 HH CS
         AAA  88 qL 89 
                 +L
  CDO69714.1 219 AL 220
                 55 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 5e-09
                 EEESSTTSSHHHHHHHHHHHH....THEEEEEETTTCSSS............STTHHH.HHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHH CS
         AAA   2 llyGppGtGKTllakavakel....gvefleisgsellsk............yvgese.kkirelfkeakekakp.silfiDEidalaksrsgseseee 82 
                 l+ Gp G+GKT l+ka+a  l    ++ +++i++se  +             yvg  e  ++ e +++     kp  ++++DE+++ +k+         
  CDO69714.1 525 LFLGPTGVGKTELCKALAAFLfndeSRGLININMSEYHDRhtisrligaapgYVGFEEgGQLTEAVRR-----KPyAVILLDELEKAHKDV-------- 610
                 899*****************976656889*********668999988888887764440344444433.....3669**********8877........ PP

                 HHHHHHHHHHHHHTTTS.........SSTEEEEEEESS CS
         AAA  83 ervvnqLlteldgvkkk.........eskvivigatnr 111
                    +  Ll+ ld+ +           + ++i+++++n 
  CDO69714.1 611 ---AMILLQILDEGSITdsqgrkvdfK-NTIICLTSNL 644
                 ...888888888887777777777743.3666666665 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5         6   2.4e+03      13      31 ..     387     405 ..     371     408 .. 0.76
   2 !   67.0   0.2     3e-21   1.2e-18       1      78 [.     695     774 ..     695     777 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 6
                    HHHHHHHHSCTTTEEEEEH CS
  ClpB_D2-small  13 alkklekrlkergvelevt 31 
                    ++k+l+++l+e + ele+ 
     CDO69714.1 387 KIKDLKQKLEEAKRELEIA 405
                    7999*****9999999886 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 3e-21
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSST..TSE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelke..gdt 78 
                    L+++ + k+vdl+l ++++rl+ r+++l+v+  a+++la++gy+ +yGAR + ri++ +++ pla+++l+g++++  gd 
     CDO69714.1 695 LSQQSILKVVDLRLGDVQERLRPRRITLDVDAGAREWLAKEGYSDVYGARAIARIVRTKVLFPLAQKMLKGTIRQvdGDV 774
                    8999********************************************************************99532555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.5e-05     0.014       3      74 ..     120     197 ..     118     201 .. 0.62
   2 !   42.0   0.0   2.3e-13   8.8e-11       2     107 ..     524     635 ..     523     655 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.5e-05
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--...........--------...G-SEEEEESG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar...egeilvlDEv 74 
                 +L+GppG+gK+ + e la+++  +ev + + +++  + dl   +  +   g+ + + ++l + ++      i+++DE+
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIvAKEVPESLQNKRVLSIDLAAIMAGSgiRGQFEEKFKALIKDIEdeaGNVICFIDEL 197
                 79*******************966655555555555555555555444444444444444444445544445555655 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 2.3e-13
                 EEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrreikngttslvd.splvraar..egeilvlDEveraesevlnsLlslleerr 93 
                 +l +Gp+G+gK+el + laa+l     r +  ++++++  + ++   +  ++g   +++ + l++a+r    ++++lDE+e+a+++v+++Ll++l+e  
  CDO69714.1 524 FLFLGPTGVGKTELCKALAAFLfndeSRGLININMSEYHDRHTISRLIGAAPGYVGFEEgGQLTEAVRrkPYAVILLDELEKAHKDVAMILLQILDEGS 622
                 789********************887677777888888888888888877766666665279999999766799************************* PP

                 EE..-SSSEEE--- CS
       AAA_5  94 llleeggelvkakn 107
                 +  ++ g+ v++kn
  CDO69714.1 623 IT-DSQGRKVDFKN 635
                 99.77777777777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-07   5.4e-05       3      51 ..      98     143 ..      96     157 .. 0.85
   2 ?    2.7   0.0      0.38   1.5e+02     117     148 ..     170     201 ..     146     230 .. 0.74
   3 !   13.0   0.0   0.00025     0.097       2      51 ..     493     548 ..     492     577 .. 0.75
   4 ?    1.7   0.1      0.77     3e+02     134     162 ..     592     621 ..     584     631 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-07
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 +GR+ee+++  ++l+r  ++ p   +l+G++GvGK+++++ l++++ ++
  CDO69714.1  98 IGRDEEIRRTIQILSRRTKSNP---VLIGPPGVGKTAILEGLAQRIVAK 143
                 7******999888887777766...799***************999877 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.38
      AAA_16 117 srllellkrllallsrderplvlvlDdlqwad 148
                  ++ e++k+l++ ++ ++  ++ ++D+l+ + 
  CDO69714.1 170 GQFEEKFKALIKDIEDEAGNVICFIDELHTLF 201
                 67889999999999998888*********554 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00025
      AAA_16   2 lvGReeeleqLlsale..rvrsgrp....elvllsGesGvGKsslvrellralekd 51 
                 +vG ++ ++++ +a++  r+  + p     + l+ G+ GvGK+ l ++l+  l  d
  CDO69714.1 493 VVGQDHVVQAVSDAVRisRAGLQAPnrpvASFLFLGPTGVGKTELCKALAAFLFND 548
                 7899999999999999444444444878999*****************99877666 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.77
      AAA_16 134 erp.lvlvlDdlqwadeaslqllaaLlrll 162
                 ++p  v++lD+l++a  + +++l ++l+++
  CDO69714.1 592 RKPyAVILLDELEKAHKDVAMILLQILDEG 621
                 34559*************999987777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.5e-06    0.0018       4      66 ..     115     178 ..     112     209 .. 0.84
   2 !   14.5   0.0   8.1e-05     0.032      10     117 ..     526     619 ..     522     628 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.5e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralgl 66 
                 t++  v++G++G+GKT  l+ l+++ ++ + +e  ++++v++++l++ +  + ++ ++ ++++ 
  CDO69714.1 115 TKSNPVLIGPPGVGKTAILEGLAQRIVAKEVPESlQNKRVLSIDLAAIMAGSGIRGQFEEKFKA 178
                 788889*******************987777777**********99999888888888887775 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8.1e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseea 108
                   G++G+GKT l++ l+  l ++     e+++++ +++++  ++ ++ r +  a g    +      e   +l++a+r++   +++++DE ++  ++++
  CDO69714.1 526 FLGPTGVGKTELCKALAAFLFND-----ESRGLININMSEYHDRHTISRLIGAAPG----Y---VGFEEGGQLTEAVRRKPY-AVILLDELEKA-HKDV 610
                 67*****************9544.....6888888888888866665555555555....3...334456777777777777.88888888887.6665 PP

      AAA_22 109 leeLrslln 117
                    L ++l+
  CDO69714.1 611 AMILLQILD 619
                 555555555 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.1e-10   4.1e-08       3      55 ..     826     882 ..     824     887 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.1e-10
                 HHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS..CCHH..HHHHHHHHHHHHHHHHTS CS
        DnaJ   3 YeiLgvskdasedeIkkaYrklalkyHPDkn..pkdp..eaeekFkeineAyevLsd 55 
                 ++i  ++  a++++Ik++Y++l++ +HPD    ++ p    + +F+ i++Ay+vL  
  CDO69714.1 826 HQIFHLPAGATQSQIKARYYELVRIHHPDSPfgRDLPpdVRHSRFQSITAAYDVLRG 882
                 78999************************76444444656777************75 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13        52       3      60 ..      99     161 ..      97     200 .. 0.67
   2 !   26.2   0.0   1.4e-08   5.4e-06      23     142 ..     522     642 ..     495     656 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.13
                      --SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH.......HSTTTTS-EEEEETTT CS
  Sigma54_activat   3 gesealkelleqikkvaktdlsvlitGesGtGKellaraihe.......askrkekpfvavncaa 60 
                      g++e+++++++ +++ +  +++ ++ G  G+GK+ + + + +        ++ ++k++++++ aa
       CDO69714.1  99 GRDEEIRRTIQILSRRT--KSNPVLIGPPGVGKTAILEGLAQrivakevPESLQNKRVLSIDLAA 161
                      66677777777666654..4455667*******99876666633223322222444455555555 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.4e-08
                      S-EEEECSTTSSHHHHHHHHHH.HSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraihe.askrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekL 113
                      +s l +G +G+GK+ l +a+ +   + +++ ++++n++++ ++   s+L G + G + G e+  +   ++++    +++LDe+++   ++   L
       CDO69714.1 522 ASFLFLGPTGVGKTELCKALAAfLFNDESRGLININMSEYHDRHTISRLIGAAPG-YVGFEEGGQltEAVRRKPYAVILLDELEKAHKDVAMIL 614
                      7899***************999556777889*********************999.78877655444567777789****************** PP

                      HHHHHHSEEESBTSSSEEE--EEEEEEES CS
  Sigma54_activat 114 lrvlqegevervGsskeikvdvriiaatn 142
                      l++l+eg+++   + ++++++  ii+ t+
       CDO69714.1 615 LQILDEGSITDSQG-RKVDFKNTIICLTS 642
                      *******9985322.23333444555554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00028      0.11      45      75 ..     114     144 ..      99     188 .. 0.86
   2 ?   -0.1   0.2       1.7   6.7e+02      81     109 ..     386     414 ..     370     422 .. 0.80
   3 !    9.9   0.0    0.0014      0.55      49      69 ..     523     543 ..     518     553 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00028
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavrag 75 
                 ++k n vl+Gp+GvGK+ +   l+++ v+++
  CDO69714.1 114 RTKSNPVLIGPPGVGKTAILEGLAQRIVAKE 144
                 568999*****************99998876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.7
   IstB_IS21  81 vrvedLveelkrarrdgklaralkrllkv 109
                  +++dL ++l+ a+r+ ++a+++ ++ k+
  CDO69714.1 386 DKIKDLKQKLEEAKRELEIAQRQGQYEKA 414
                 57889999999999999999888777665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0014
   IstB_IS21  49 nivllGpsGvGKshlaialgv 69 
                 ++++lGp+GvGK+ l  al+ 
  CDO69714.1 523 SFLFLGPTGVGKTELCKALAA 543
                 6899***************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0013      0.51       3      22 ..     121     140 ..     120     196 .. 0.78
   2 !   12.9   0.0   0.00032      0.12       3      22 ..     526     545 ..     525     621 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0013
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 l G+pGvGKt + + L++r 
  CDO69714.1 121 LIGPPGVGKTAILEGLAQRI 140
                 89**************9884 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00032
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                   G+ GvGKt+l+k+L+  l
  CDO69714.1 526 FLGPTGVGKTELCKALAAFL 545
                 57**************7654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00046      0.18      21      65 ..     115     159 ..      97     177 .. 0.80
   2 !    8.9   0.0    0.0022      0.87      24      59 ..     523     558 ..     491     647 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00046
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag 65 
                    + n +l+GppG GKt + + l++ + + +  e+l+ +++ s+  
    CDO69714.1 115 TKSNPVLIGPPGVGKTAILEGLAQRIVAKEVPESLQNKRVLSIDL 159
                   566789****************99999999999999999999865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0022
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplseeealevak 59 
                   ++l++Gp G GKt l k+l++ l + +++  +++++
    CDO69714.1 523 SFLFLGPTGVGKTELCKALAAFLFNDESRGLININM 558
                   689*****************9998877777666654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00076       0.3       3      29 ..     120     147 ..     118     152 .. 0.83
   2 ?    1.3   0.5      0.92   3.6e+02      72      95 ..     276     308 ..     234     397 .. 0.64
   3 ?   -1.5   1.1       6.9   2.7e+03      57      57 ..     372     372 ..     300     445 .. 0.62
   4 ?    7.3   0.0     0.013         5       3      21 ..     525     543 ..     523     566 .. 0.85
   5 ?    1.2   0.1         1     4e+02      65     163 .]     776     901 ..     730     929 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00076
      AAA_28   3 vitGgestGKTtlleaLaar.gypvvpE 29 
                 v++G+++ GKT +le La+r   + vpE
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRiVAKEVPE 147
                 89****************9954445555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.92
      AAA_28  72 ankvlfcDrglldtlaYaraygg.........e 95 
                   +v ++D  l++ ++Y+ +y           +
  CDO69714.1 276 HHGVGISDGALVTAAVYSSRYISdrylpdkaiD 308
                 567778999999999999888773333333330 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 6.9
      AAA_28  57 e 57 
                 e
  CDO69714.1 372 E 372
                 1 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.013
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  ++G+ + GKT l++aLaa
  CDO69714.1 525 LFLGPTGVGKTELCKALAA 543
                 689**************96 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 1
      AAA_28  65 eeeaaaaankvlfcDrglldtlaYaraygg..........................eaeaeleaaarekrydlvfllppapei...dddgeRredleer 134
                 +  a+a+++++ + D   +d+ + + +y                            + + +++++++++ y lv +  p+ ++    + ++R  +++  
  CDO69714.1 776 QIRASADGKELDIKDNHQPDPSIASSTYQTrcastssvaypfpthprptphqifhlP-AGATQSQIKARYYELVRIHHPDSPFgrdLPPDVRHSRFQSI 873
                 334667888888888888888888888888777777777777777766655555322.23344577777788855555554443333667888888888 PP

      AAA_28 135 eaiderlrealrelgipviivpsgdveeR 163
                 +a +++lr   ++ g p+ i  ++ +e+R
  CDO69714.1 874 TAAYDVLRGKTTASGAPMDIY-RAELERR 901
                 888888888888877777666.6666665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   0.00014     0.056       6      78 ..     120     202 ..     116     225 .. 0.77
   2 !    8.4   0.0    0.0053       2.1       8      90 ..     527     621 ..     523     634 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00014
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd...kkla.dpe.kllelileklkeekktylflDEiqevpe 78 
                 v+ G+  vGKT +l+ l+++          +++++l i+l           + ++e k+  li++   e ++ + f+DE + + +
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVakevpesLQNKRVLSIDLAAIMAgsgI--RgQFEeKFKALIKDIEDEAGNVICFIDELHTLFN 202
                 789**************988889999999999********998885431..32333245555555434469999*****998754 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0053
      AAA_14   8 tGaRrvGKTtllkqlikell.vkkesilyinldderdkkladpe...............kllelileklke....ekktylflDEiqev.pewekalks 85 
                  G+  vGKT l+k l+  l+  +++  + in+ + +d+     +               +l         e    +   +++lDE  ++ +++  +l +
  CDO69714.1 527 LGPTGVGKTELCKALAAFLFnDESRGLININMSEYHDRHTIS-RligaapgyvgfeeggQLT--------EavrrKPYAVILLDELEKAhKDVAMILLQ 616
                 6999************88886667778888888877744221.1223222222221222222........24522233459999999873567777777 PP

      AAA_14  86 lvdeg 90 
                 ++deg
  CDO69714.1 617 ILDEG 621
                 77766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0     0.003       1.2      32      61 ..     115     144 ..     102     200 .. 0.61
   2 !   13.1   0.0   0.00013      0.05      35      82 ..     523     571 ..     500     574 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.003
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkek 61 
                  k + +l+Gp G+GKt+i++ l +++  ++
  CDO69714.1 115 TKSNPVLIGPPGVGKTAILEGLAQRIVAKE 144
                 45667899**********999777665433 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00013
       AAA_7  35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaqtsanqlqdii 82 
                 ++l+ GptG+GKt ++k      +++e+   ++in+s + + +++ ++i
  CDO69714.1 523 SFLFLGPTGVGKTELCKAlAAFLFNDESRGLININMSEYHDRHTISRLI 571
                 689***************44445568889999******99998888776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0056       2.2       6      64 ..     120     187 ..     115     215 .. 0.68
   2 !   13.4   0.0   0.00012     0.046       5      81 ..     524     610 ..     522     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0056
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie.........swedfldevvelaaela 64 
                 +++Gp+g+GKT ++  l ++++   + ++l++  +  ++ +          ++e+  +++ ++ +++a
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVAKEVPESLQNKRVLSIDLAAimagsgirgQFEEKFKALIKDIEDEA 187
                 89************999888887777777777777776655566666666644444444444444444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelc 81 
                 +l  Gp g+GKT l+k l   +lf d  +Gl +++  ++ d +++  ++ ++              a   ++y ++ +D ++++ + +
  CDO69714.1 524 FLFLGPTGVGKTELCKAL-AAFLFNDESRGLININMSEYHDRHTISRLIGAAPGYvgfeeggqlteAVRRKPYAVILLDELEKAHKDV 610
                 6778**************.*********************999888888888777888999999998899999******999997655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.3     0.003       1.2      36      63 ..     119     151 ..      94     205 .. 0.63
   2 ?   -0.4   0.1       2.2   8.7e+02      67     103 ..     362     398 ..     349     405 .. 0.85
   3 !    9.2   0.0    0.0024      0.92      10      55 ..     494     543 ..     487     550 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.003
      RuvB_N  36 vllyGpPGlGkttl....a.kiiakelgvklki 63 
                  +l+GpPG+Gkt++    a +i+ake+  +l+ 
  CDO69714.1 119 PVLIGPPGVGKTAIleglAqRIVAKEVPESLQN 151
                 3678********972222224667766555544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.2
      RuvB_N  67 Pvlekagdlaalltnleekdvlfideihrlsraveev 103
                  +l+++++la  lt++ + +   +d i  l++++ee 
  CDO69714.1 362 QTLKEKRELAEQLTQVWQAERARLDKIKDLKQKLEEA 398
                 4688999*************************99995 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0024
      RuvB_N  10 igqekvkeklk....ifieaakkreealdhvllyGpPGlGkttlakiiak 55 
                 +gq++v + ++    i  +  ++ ++++   l+ Gp G+Gkt l+k +a+
  CDO69714.1 494 VGQDHVVQAVSdavrISRAGLQAPNRPVASFLFLGPTGVGKTELCKALAA 543
                 677766665541100444455667888999***************99886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.046        18      15      39 ..     120     144 ..     111     223 .. 0.77
   2 ?    1.4   2.9       1.1   4.2e+02      47      80 ..     321     373 ..     307     494 .. 0.71
   3 !   12.3   0.0   0.00048      0.19      15      60 ..     525     570 ..     520     638 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.046
                 EEEESTTSSHHHHHHHHTTSS--SE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpte 39 
                 +++G+ G GK+ +l+ la+    +e
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVAKE 144
                 79************99998766554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 1.1
                 CEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH..................H CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..................x RF
    ABC_tran  47 kdlkeqeleslrkeigvlpqe.pqlfpeltvren..................e 80 
                 +++k +ele l++ei +l+ e ++l++e+ v +n                  +
  CDO69714.1 321 QESKPDELEALDREIMTLEIErESLKNETDVFSNerrakveqtlkekrelaeQ 373
                 45555667777777777776656666666677773333333333222433331 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00048
                 EEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHC CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrke 60 
                  ++G++G GK+ L+k+la  l +    G i++++ + ++  ++  ++ 
  CDO69714.1 525 LFLGPTGVGKTELCKALAAFLFNdeSRGLININMSEYHD--RHTISRL 570
                 589***************988663366777777666665..4444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0063       2.5       3      25 ..     121     143 ..     120     164 .. 0.82
   2 !    9.1   0.0    0.0044       1.7       2      23 ..     525     546 ..     524     566 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0063
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l Gp+g+GK+ + + La+++  k
    CDO69714.1 121 LIGPPGVGKTAILEGLAQRIVAK 143
                   78****************99854 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0044
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gp+g+GK+ l+k La+ l 
    CDO69714.1 525 LFLGPTGVGKTELCKALAAFLF 546
                   589*************998665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.012       4.5       3      26 ..     120     143 ..     119     164 .. 0.83
   2 !    9.7   0.0    0.0024      0.94       3      38 ..     525     560 ..     523     570 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.012
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                 vl+G  gvGKt +l+ + ++ + +
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVAK 143
                 79************9988776655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0024
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdflt 38 
                 +++G +gvGKt l+k +    f+++++  i +++++
  CDO69714.1 525 LFLGPTGVGKTELCKALAAFLFNDESRGLININMSE 560
                 789*******************99999999998866 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0053       2.1      92     123 ..     109     140 ..      74     153 .. 0.75
   2 !    8.3   0.0     0.005       1.9      68     120 ..     489     542 ..     448     568 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0053
                  HHHHHCTTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  92 elkellkdktsvlvGqSGvGKStLinallpel 123
                  ++ ++ +++  vl+G+ GvGK+++++ l+++ 
   CDO69714.1 109 QILSRRTKSNPVLIGPPGVGKTAILEGLAQRI 140
                  444455566789**************999874 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.005
                  HHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  68 lkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinall 120
                  lk+++   +  v +vs   + + + l++  +     +++G++GvGK+ L +al+
   CDO69714.1 489 LKKRVVGQDHVVQAVSDAVRISRAGLQAPNRPvASFLFLGPTGVGKTELCKALA 542
                  55555555555666666666666666666666567899***********99997 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00044      0.17       4      43 ..     100     139 ..      98     145 .. 0.90
   2 ?    3.9   0.0      0.11        45     103     134 ..     173     204 ..     166     213 .. 0.86
   3 ?   -0.7   1.9       2.7   1.1e+03      48     114 ..     347     403 ..     329     409 .. 0.53
   4 ?    4.0   0.0      0.11        42      26      58 ..     527     559 ..     516     608 .. 0.74
   5 ?   -1.2   0.0       4.1   1.6e+03     116     145 ..     592     618 ..     585     643 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00044
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 R++e+++  +il+r +++  ++ Gp g+GKta+l  ++++
  CDO69714.1 100 RDEEIRRTIQILSRRTKSNPVLIGPPGVGKTAILEGLAQR 139
                 99*******************************9887766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
    ATPase_2 103 fkaielllekikkkgkkiiiiiDelqklidlg 134
                 ++++++l+++i++++  +i +iDel  l +lg
  CDO69714.1 173 EEKFKALIKDIEDEAGNVICFIDELHTLFNLG 204
                 688999*******************9999665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.7
    ATPase_2  48 dkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilk.eksklvfkaielllekik 114
                 ++  ++ ++ r + +++l+       ek++l+++l ++ +  ++      +k+k++++++e+++++++
  CDO69714.1 347 NETDVFSNERRAKVEQTLK-------EKRELAEQLTQVWQAERA----RlDKIKDLKQKLEEAKRELE 403
                 3344444444444444433.......345555555443333333....22566888888888777765 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.11
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviyyialr 58 
                  Gp g+GKt L k ++  l + + + +  i+++
  CDO69714.1 527 LGPTGVGKTELCKALAAFLFNDESRGLININMS 559
                 4************99988844444444444444 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 4.1
    ATPase_2 116 kgkkiiiiiDelqklidlglngaellvkeL 145
                 ++   +i++Del k+   + + a  l++ L
  CDO69714.1 592 RKPYAVILLDELEKAH--K-DVAMILLQIL 618
                 223379999***9998..2.4444555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.02       7.8      22      44 ..     116     138 ..     106     146 .. 0.78
   2 !    7.8   0.0     0.007       2.7      24      50 ..     523     549 ..     513     557 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.02
      AAA_29  22 kgatlltGpsGsGKSTllDAiqa 44 
                 k++ +l+Gp G+GK+++l  ++ 
  CDO69714.1 116 KSNPVLIGPPGVGKTAILEGLAQ 138
                 44789************987765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.007
      AAA_29  24 atlltGpsGsGKSTllDAiqalLvpak 50 
                 ++l+ Gp+G+GK+ l  A++a L  ++
  CDO69714.1 523 SFLFLGPTGVGKTELCKALAAFLFNDE 549
                 589****************99998765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.018       6.9       6      48 ..     103     145 ..      99     148 .. 0.77
   2 ?    6.7   0.0     0.017       6.8      21      43 ..     523     545 ..     497     551 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT---- CS
        TsaE   6 etealgkklakalgdvilLeGdLGaGKTtlvrglakalgveev 48 
                 e+++  + l + +++  +L G+ G+GKT++  gla+ +  +ev
  CDO69714.1 103 EIRRTIQILSRRTKSNPVLIGPPGVGKTAILEGLAQRIVAKEV 145
                 555556666666677789*****************99866555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.017
                 EEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  21 vilLeGdLGaGKTtlvrglakal 43 
                  +l+ G+ G+GKT l+++la+ l
  CDO69714.1 523 SFLFLGPTGVGKTELCKALAAFL 545
                 37899*************99765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0023       0.9       4      31 ..     120     147 ..     118     165 .. 0.84
   2 ?   -2.3   0.1       9.7   3.8e+03      51      71 ..     364     387 ..     351     398 .. 0.70
   3 ?    3.0   0.0      0.22        84       5      24 ..     526     545 ..     523     617 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0023
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l G++G+GKT+ l++la+ + +++ p+
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVAKEVPE 147
                 689***************9987666654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.7
                 .....-HCHHHCCCCTS--SSS-C CS
       NACHT  51 a...rsladllfsqlpepaapvse 71 
                     r la++l+++++++ a+ ++
  CDO69714.1 364 LkekRELAEQLTQVWQAERARLDK 387
                 134578999999999999888877 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.22
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                   G+ G+GKT L + la  +
  CDO69714.1 526 FLGPTGVGKTELCKALAAFL 545
                 68**********99998655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00082      0.32       9      38 ..     115     144 ..     107     161 .. 0.81
   2 ?    1.7   0.0      0.75   2.9e+02      13      38 ..     524     549 ..     515     622 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00082
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++ +++++pG GKT +l++  + +v+ +
  CDO69714.1 115 TKSNPVLIGPPGVGKTAILEGLAQRIVAKE 144
                 5667789*************9998887765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.75
      AAA_19  13 llvtaGpGtGKTrvlkhivallvelg 38 
                 +l +++ G GKT++ k+  a l + +
  CDO69714.1 524 FLFLGPTGVGKTELCKALAAFLFNDE 549
                 56788999999999988887776554 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.036        14      33      62 ..     116     144 ..     104     200 .. 0.80
   2 ?    6.9   0.0     0.012       4.9      26      63 ..     513     550 ..     490     570 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.036
                 .S--EEEE-SSSSSHHHHHHHHHHHHHHHS CS
    Bac_DnaA  33 kynPlfiygevGlGktHLlkaignevlena 62 
                 k nP++i g+ G+Gkt +l+ +++++++++
  CDO69714.1 116 KSNPVLI-GPPGVGKTAILEGLAQRIVAKE 144
                 679*998.99**********9998887654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
                 HHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSS CS
    Bac_DnaA  26 vaeapgkkynPlfiygevGlGktHLlkaignevlenap 63 
                   +ap++    +++ g++G+Gkt L ka++  + ++++
  CDO69714.1 513 GLQAPNRPVASFLFLGPTGVGKTELCKALAAFLFNDES 550
                 335677777888999*************9987776665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.016         6       4      28 ..     121     145 ..     118     148 .. 0.87
   2 ?    4.3   0.0     0.087        34       6      24 ..     528     546 ..     523     565 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.016
                 EE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgv 28 
                 + GppGvGKt +++ +++ +  ++v
  CDO69714.1 121 LIGPPGVGKTAILEGLAQRIVAKEV 145
                 67*************9999988776 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.087
                 --TTSSHHHHHHHHHHHH. CS
    NTPase_1   6 GppGvGKtTlvkkvlellk 24 
                 Gp GvGKt l+k ++  l 
  CDO69714.1 528 GPTGVGKTELCKALAAFLF 546
                 9***********9998774 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.093        36       5      28 ..     120     143 ..     116     153 .. 0.87
   2 ?    8.1   0.0    0.0047       1.8       4      29 ..     524     549 ..     521     556 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.093
                 EEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   5 llvGlqGaGKTttlaKLaallkke 28 
                 +l+G+ G+GKT  l  La+++ ++
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVAK 143
                 799***************998776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0047
                 EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkeg 29 
                 +l++G++G+GKT  +  Laa l +++
  CDO69714.1 524 FLFLGPTGVGKTELCKALAAFLFNDE 549
                 79*****************9987665 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0072       2.8      20      58 ..     119     155 ..     102     158 .. 0.77
   2 ?    0.8   4.5      0.91   3.5e+02     130     189 ..     341     396 ..     297     429 .. 0.45
   3 ?   -1.6   0.0       4.7   1.8e+03      19      41 ..     523     545 ..     506     574 .. 0.75
   4 ?    3.8   0.0      0.11        41      79     176 ..     836     994 ..     827    1004 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0072
      AAA_11  20 tliqGPPGtgKTktivellsqllsrrkseeeksakpriL 58 
                  ++ GPPG gKT  + +l ++++ +  ++ e  +++r+L
  CDO69714.1 119 PVLIGPPGVGKTAILEGLAQRIVAK--EVPESLQNKRVL 155
                 4688*****************9543..566677777776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.91
      AAA_11 130 skeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesle 189
                 ++e+ k+++++  f++e   +++ ++  k+k++l +++++++++ +   ++++  +++le
  CDO69714.1 341 ERESLKNETDV--FSNER--RAKVEQTLKEKRELAEQLTQVWQAERARLDKIKDLKQKLE 396
                 22222222222..22221..1222222222222222222222222222222222222222 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.7
      AAA_11  19 itliqGPPGtgKTktivellsql 41 
                  +l+ GP G gKT    +l + l
  CDO69714.1 523 SFLFLGPTGVGKTELCKALAAFL 545
                 56889********8777666665 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.11
      AAA_11  79 ldsegekykpkivRvgnee.........eriseavksvsleekvekrlekee......kaqlakeiskeleklakelrafeeeeek............. 149
                  +s+ + +  ++vR+ +++         +  +++ +s++  + v + ++  +      + +  ++ ++++++++++ r  +++ ++             
  CDO69714.1 836 TQSQIKARYYELVRIHHPDspfgrdlppDVRHSRFQSITAAYDVLRGKTTASgapmdiYRAELERRRRARAAHEASRRPMSSQPQEwtaaaddrwkdri 934
                 566677777889999999988888777766677777777777776666555467666633333333333444444444444444337888899999999 PP

      AAA_11 150 .................................eklkkskekskskleqerrklkkerke 176
                                                  ++l++++++ ++  e++r+++++ ++e
  CDO69714.1 935 ilfvgilalgvglgpmlvwpsysasyqhhiaasKNLAQARREAREFGEERRQEIRRRVQE 994
                 999999999999999888888855544444444344444444444444444444444333 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.096        37      11      51 ..     103     143 ..      95     191 .. 0.80
   2 ?   -1.0   0.3       3.8   1.5e+03      65     122 ..     369     436 ..     346     450 .. 0.61
   3 ?    5.3   0.0     0.047        18      25      51 ..     522     548 ..     479     556 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.096
                 HHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  11 aienlleklkskrdkrglikmaTGtGKTlvaaklierllkk 51 
                  i+++++ l+ + + + ++  + G+GKT ++  l++r+  k
  CDO69714.1 103 EIRRTIQILSRRTKSNPVLIGPPGVGKTAILEGLAQRIVAK 143
                 5888888888677778899***********99998888766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.8
                 HHHHHHHHHGGGGTGG......GEEEESSS-B--................-SEEEEEHHHHHHTH....... CS
      ResIII  65 slleqtleefkkflseayke..igkkvsgdkkka.........kekdstnkkilvttiqsldadseee...e 122
                 +l eq+ + ++      +k    ++k+++    a         + + ++ +++ ++ti +l +++++e   e
  CDO69714.1 369 ELAEQLTQVWQAERARLDKIkdLKQKLEE----AkreleiaqrQGQYEKASRLRFATIPELERQLPTEsagE 436
                 45555554444333333221222222222....123345566666778889999999999999987765441 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.047
                 SEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkk 51 
                   +l+  +TG+GKT ++ +l++ l++ 
  CDO69714.1 522 ASFLFLGPTGVGKTELCKALAAFLFND 548
                 3788999*********98888877775 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.17        67       2      22 ..     122     142 ..     121     151 .. 0.85
   2 ?    7.8   0.0    0.0065       2.5       2      25 ..     527     549 ..     526     560 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.17
  ATP_bind_1   2 vGpaGsGKttfvgalseilel 22 
                 +Gp+G+GKt + + l++ + +
  CDO69714.1 122 IGPPGVGKTAILEGLAQRIVA 142
                 8***********999987765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0065
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgr 25 
                 +Gp G+GKt +++al+ +l +   
  CDO69714.1 527 LGPTGVGKTELCKALAAFLFND-E 549
                 7***************998655.3 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0095       3.7      37     107 ..     120     193 ..      99     227 .. 0.63
   2 ?    2.5   0.0      0.24        93      37      57 ..     525     545 ..     520     555 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0095
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvld 107
                 +l+G+pg+GKt+++  la  ++  + +++     +v +   +  + ++ + + +++++++a+ ++++d a+  ++ 
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRIVAKE-VPEslqnkRVLSIDLAA-IMAGSGIRGQFEEKFKALIKDIEDEAGNVICF 193
                 799**************99998533.44533332111122222.22333334466666666666666555555555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.24
      AAA_25  37 llaGapgtGKttlaldlalav 57 
                 l+ G++g+GKt l+  la+ +
  CDO69714.1 525 LFLGPTGVGKTELCKALAAFL 545
                 678***********9999876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0019      0.75      21      44 ..     119     142 ..     105     166 .. 0.78
   2 ?    2.8   0.0      0.22        86      23      45 ..     526     548 ..     521     624 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0019
      AAA_30  21 avltGpAGtGKttalkalreawea 44 
                  vl Gp+G GKt +l++l++ + a
  CDO69714.1 119 PVLIGPPGVGKTAILEGLAQRIVA 142
                 589**************9765544 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.22
      AAA_30  23 ltGpAGtGKttalkalreaweaa 45 
                   Gp G GKt + kal++ + ++
  CDO69714.1 526 FLGPTGVGKTELCKALAAFLFND 548
                 56999********9998876544 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0018       0.7      16     129 ..     518     620 ..     512     625 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
  DNA_pol3_delta2  16 grlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivi....eteekersikldqirelieelsrkpreskkk 105
                      +r   ++Lf G++g+gk el ++la  l+ +e ++           +i+  +++D ++i    +       +  ++  +l+e + rkp+     
       CDO69714.1 518 NRPVASFLFLGPTGVGKTELCKALAAFLFNDESRGL---------ININMSEYHDRHTIsrliGAAPG--YVGFEEGGQLTEAVRRKPY----A 596
                      6667899**********************9999877.........23444444444444222233333..7788888888888888876....4 PP

  DNA_pol3_delta2 106 iiiiedaekmtksAaNalLktlEE 129
                      +i++++ ek +k  a +lL++l E
       CDO69714.1 597 VILLDELEKAHKDVAMILLQILDE 620
                      888888888888888888888877 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.015       5.9       3      20 ..     120     137 ..     120     177 .. 0.83
   2 ?    1.2   0.1      0.68   2.6e+02     114     194 ..     348     427 ..     312     446 .. 0.61
   3 ?    2.9   0.0      0.21        82       3      38 ..     525     552 ..     523     580 .. 0.73
   4 ?   -2.3   0.0       7.6     3e+03     255     268 ..     592     605 ..     586     627 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 vliGp g+GK+ +L+ l 
  CDO69714.1 120 VLIGPPGVGKTAILEGLA 137
                 8***************93 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.68
      AAA_21 114 eargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslkl 194
                 e + +   ++ +++++l  + + ++q  +++   ++r++++++l+++l + +++ l+i+++   + k  rl++  +++l +
  CDO69714.1 348 ETDVFSNERRAKVEQTLKEKRELAEQLTQVWQAERARLDKIKDLKQKLEE-AKRELEIAQRQGQYEKASRLRFATIPELER 427
                 33333344444555555555555566666666666666666666666655.666666666666666666666655555555 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.21
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsg 38 
                 ++ Gp g+GK+ L +al  + +        +de++g
  CDO69714.1 525 LFLGPTGVGKTELCKALAAFLF--------NDESRG 552
                 689**************77643........333333 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 7.6
      AAA_21 255 lkkgsllliDEpEn 268
                 +k+ +++l+DE+E 
  CDO69714.1 592 RKPYAVILLDELEK 605
                 44459*******96 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.25        98      27      43 ..     120     136 ..     111     197 .. 0.88
   2 ?    3.8   0.3     0.096        37     190     256 ..     342     402 ..     232     437 .. 0.62
   3 ?    3.0   0.0      0.17        68      27      72 ..     525     568 ..     521     574 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.25
      AAA_15  27 vliGkNnsGKSsileal 43 
                 vliG+ ++GK+ ile l
  CDO69714.1 120 VLIGPPGVGKTAILEGL 136
                 89************987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.096
      AAA_15 190 lksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkkl 256
                  +s+  +++++s++R ++ e++ k++  l +++ + +        e    +k+k+++ kl+e++ +l
  CDO69714.1 342 RESLKNETDVFSNERRAKVEQTLKEKRELAEQLTQVWQA------ERARLDKIKDLKQKLEEAKREL 402
                 333444455555555555555555555555555544443......3333333333333333333333 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.17
      AAA_15  27 vliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenis 72 
                 ++ G+ ++GK+ + +al  Fl n+e+     i+i+ +++++ + is
  CDO69714.1 525 LFLGPTGVGKTELCKALAAFLFNDES--RGLININMSEYHDRHTIS 568
                 688999**************998844..346667666666666555 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.6    0.0049       1.9       8      22 ..     386     400 ..     383     401 .. 0.94
   2 ?    0.5   0.0       1.7   6.4e+02      10      17 ..     422     429 ..     421     430 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0049
  Pox_A_type_inc   8 sRIsDLErqLseCrr 22 
                     ++I DL+++L+e++r
      CDO69714.1 386 DKIKDLKQKLEEAKR 400
                     79**********997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.7
  Pox_A_type_inc  10 IsDLErqL 17 
                     I +LErqL
      CDO69714.1 422 IPELERQL 429
                     679****9 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.23        91       4      24 ..     121     141 ..     119     157 .. 0.88
   2 ?    0.4   0.0       1.4   5.3e+02       6      26 ..     528     548 ..     524     558 .. 0.81
   3 ?    4.5   0.0     0.078        31      64     101 ..     596     634 ..     581     645 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.23
       AAA_3   4 legvPGlaktllvkalakald 24 
                 l g PG++kt + + la+ + 
  CDO69714.1 121 LIGPPGVGKTAILEGLAQRIV 141
                 6689*************9875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.4
       AAA_3   6 gvPGlaktllvkalakaldle 26 
                 g  G++kt l kala  l  +
  CDO69714.1 528 GPTGVGKTELCKALAAFLFND 548
                 678************987655 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.078
       AAA_3  64 nllladeinrappktqsalleameerqvtveg.ethklp 101
                  ++l de+++a   +   ll++++e  +t ++ ++ +++
  CDO69714.1 596 AVILLDELEKAHKDVAMILLQILDEGSITDSQgRKVDFK 634
                 5899************************96430444444 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.4   5.6e+02       5      23 ..     120     138 ..     117     159 .. 0.81
   2 ?    8.4   0.0    0.0043       1.7       4      22 ..     524     542 ..     521     557 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.4
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 +liG+ g+GKt++ + l +
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQ 138
                 69*********98777765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0043
   PduV-EutP   4 illiGkvgsGKttLtqalk 22 
                  l++G++g+GKt L++al 
  CDO69714.1 524 FLFLGPTGVGKTELCKALA 542
                 589**************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.071        28       3      23 ..     120     141 ..     118     195 .. 0.88
   2 ?   -1.0   0.4       4.5   1.7e+03      62     107 ..     356     401 ..     309     408 .. 0.75
   3 ?    3.0   0.0      0.28   1.1e+02       3      20 ..     525     542 ..     523     565 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.071
                 EEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.k 23 
                 +++G p vGK+ ++  l ++ +
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQRiV 141
                 689***********99998743 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSE CS
    MMR_HSR1  62 eekglgkaflalee.adlillvvdaseeklkpldeeleelleeakkp 107
                 ++ ++++++++++e a+ +  v +a+++ l+++ ++l++ leeak++
  CDO69714.1 356 RRAKVEQTLKEKRElAEQLTQVWQAERARLDKI-KDLKQKLEEAKRE 401
                 334678888888887788888988774445444.6666666555554 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.28
                 EEEESTTSSHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinalt 20 
                 +++G + vGK+ L +al 
  CDO69714.1 525 LFLGPTGVGKTELCKALA 542
                 689*************97 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.13        49      23      40 ..     120     137 ..     107     189 .. 0.91
   2 ?   12.0   0.0   0.00058      0.22      22      54 ..     524     556 ..     522     659 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.13
      AAA_23  23 lItGpNGaGKTTildAik 40 
                 +++Gp G GKT+il+ + 
  CDO69714.1 120 VLIGPPGVGKTAILEGLA 137
                 678************986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00058
      AAA_23  22 tlItGpNGaGKTTildAiklaLygetprlsrks 54 
                 +l+ Gp+G GKT +  A+   L+++ +r   + 
  CDO69714.1 524 FLFLGPTGVGKTELCKALAAFLFNDESRGLINI 556
                 89*********************9876654433 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.8     0.018       6.9      96     176 ..     312     396 ..     297     404 .. 0.70
   2 ?   -0.1   0.0       2.2   8.8e+02      34     102 ..     931     999 ..     911    1004 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.018
     UPF0242  96 eeeeeLkeeldakeeelerlkeenqqLqekleaiaedf....eelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLe 176
                 e    L+  +++k  ele l +e   L+++ e  +++     +e + ++e++L+ek+el +++ +  +  r+ l+k +d  ++Le
  CDO69714.1 312 EAASALRLAQESKPDELEALDREIMTLEIERESLKNETdvfsNERRAKVEQTLKEKRELAEQLTQVWQAERARLDKIKDLKQKLE 396
                 4445555556666666666666666666666665554300114567789*************************99888888887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.2
     UPF0242  34 s...llsiGlllaaaGsLlllllllkwekalkekleksk.leekeaklteldeglktkeealeelqeeeeeLk 102
                 +   +l +G+l + +G L  +l+   ++   ++++ +sk l++  +   e     ++ +++++ + +e +eLk
  CDO69714.1 931 KdriILFVGILALGVG-LGPMLVWPSYSASYQHHIAASKnLAQARREAREFG---EERRQEIRRRVQEYNELK 999
                 2666666666666665.34555555555555555433330222222222222...444455555555444444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0076       2.9       3      22 ..     120     139 ..     120     146 .. 0.91
   2 ?    3.9   0.0      0.15        57       3      20 ..     525     542 ..     524     564 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0076
      AAA_33   3 llvGlpGsGKstlaerllkk 22 
                 +l+G+pG+GK+  +e+l+++
  CDO69714.1 120 VLIGPPGVGKTAILEGLAQR 139
                 589*************9975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.15
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 l+ G+ G+GK+ l + l+
  CDO69714.1 525 LFLGPTGVGKTELCKALA 542
                 799**********99987 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.9     0.031        12      21     114 ..     325     407 ..     316     458 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.031
       Atg14  21 perlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk..kR 114
                 p+ l+ l  +++ l +e+eslk++ +   ++++             ak+e++ +++++l e+l ++ +  + + ++i++ k+kl++ +++l   +R
  CDO69714.1 325 PDELEALDREIMTLEIERESLKNETDVFSNERR-------------AKVEQTLKEKRELAEQLTQVWQAERARLDKIKDLKQKLEEAKRELEiaQR 407
                 555666666666666666666666553333333.............33333333333333333333333333333444444444444333333333 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.043        17       1      19 [.     122     140 ..     122     184 .. 0.89
   2 ?    5.2   0.0     0.068        27       1      17 [.     527     543 ..     527     630 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.043
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G+PG+GK+ ++e l++++
  CDO69714.1 122 IGPPGVGKTAILEGLAQRI 140
                 69***********999864 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.068
                 EE-TTSSHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklve 17 
                 lG+ G+GK+++c+ l+ 
  CDO69714.1 527 LGPTGVGKTELCKALAA 543
                 699*********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1515  (0.0845); expected 358.6 (0.02)
Passed bias filter:                      775  (0.0432261); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.46
# Mc/sec: 6558.23
//
Query:       CDO69715.1  [L=104]
Description: hypothetical protein BN946_scf184851.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-20   71.6   9.6    7.5e-20   71.3   9.6    1.1  1  Hydrophobin  Fungal hydrophobin
  ------ inclusion threshold ------
        3.4    7.6   9.1       0.32   10.9   2.8    2.3  3  CoatB        Bacteriophage coat protein B


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   9.6   8.4e-24   7.5e-20       1      80 []      22     101 ..      22     101 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 8.4e-24
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg+vqCCn+ ++a++ + +++ll+l++++++d+t qvgl+C+++nv+gv++g+sC+++pvCCe n+  + +++gC+p+
   CDO69715.1  22 CATGPVQCCNELATADSPAGAAALLSLVDVVVQDVTAQVGLGCTAVNVIGVTSGNSCDAHPVCCETNDILSGVSVGCIPV 101
                  9************997777788888********************************************999******97 PP

>> CoatB  Bacteriophage coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.11     1e+03      23      36 ..       6      19 ..       3      20 .. 0.78
   2 ?   -1.9   0.1      0.34     3e+03      18      28 ..      36      43 ..      31      51 .. 0.54
   3 ?   10.9   2.8   3.6e-05      0.32       6      27 ..      51      72 ..      40      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
       CoatB 23 aaiGaaVLvvlVgv 36
                +a+ a+VL +lV++
  CDO69715.1  6 TAVAALVLPLLVVA 19
                56778999999986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.34
       CoatB 18 AkadiaaiGaa 28
                A  +++   aa
  CDO69715.1 36 ADSPAG---AA 43
                444433...33 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 3.6e-05
       CoatB  6 vdvsaVttaittAkadiaaiGa 27
                v+v +Vt+ ++ + +++++iG+
  CDO69715.1 51 VVVQDVTAQVGLGCTAVNVIGV 72
                79*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 721.23
//
Query:       CDO69716.1  [L=142]
Description: hypothetical protein BN946_scf184851.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 983.64
//
Query:       CDO69717.1  [L=543]
Description: hypothetical protein BN946_scf184687.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3758.04
//
Query:       CDO69718.1  [L=749]
Description: hypothetical protein BN946_scf184687.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-07   31.0  20.4     0.0022   18.3   0.9    3.5  3  zf-C2H2        Zinc finger, C2H2 type
    4.5e-06   26.8  12.9     0.0036   17.7   0.2    3.8  3  zf-H2C2_2      Zinc-finger double domain
    0.00015   22.3  18.2      0.064   14.1   0.5    3.7  3  zf-C2H2_4      C2H2-type zinc finger
  ------ inclusion threshold ------
       0.28   11.2   5.9        8.4    6.5   0.3    2.8  2  zf-C2H2_6      C2H2-type zinc finger
        4.8    7.9   9.0          5    7.8   3.3    2.8  3  FOXP-CC        FOXP coiled-coil domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.9   6.1e-07    0.0022       1      23 []     614     638 ..     614     638 .. 0.96
   2 !    9.9   1.9   0.00029         1       1      23 []     644     668 ..     644     668 .. 0.92
   3 !   13.2   3.2   2.7e-05     0.098       1      21 [.     674     694 ..     674     695 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.1e-07
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 + Cp  +Cg +F+r  nLk H+r+H
  CDO69718.1 614 FACPvpGCGSTFTRHFNLKGHMRSH 638
                 679999******************9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00029
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y C+  +Cgk F r+++ krH + H
  CDO69718.1 644 YLCKwpGCGKGFARQHDCKRHEQLH 668
                 559999***************9998 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.7e-05
                 EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                 y+C++C+k F r + L+rH +
  CDO69718.1 674 YPCEGCKKHFARMDALNRHHC 694
                 99*****************86 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.17   6.2e+02      14      26 .]     611     627 ..     603     627 .. 0.75
   2 !   17.7   0.2     1e-06    0.0036       1      25 [.     630     656 ..     630     657 .. 0.94
   3 !   12.1   3.8   5.8e-05      0.21       3      25 ..     662     684 ..     660     685 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.17
   zf-H2C2_2  14 p..yeCp..lCdkaFkt 26 
                 p  + Cp   C+ +F++
  CDO69718.1 611 PanFACPvpGCGSTFTR 627
                 34499**877*****85 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1e-06
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 nL+ H+r+H  ekpy C+   C+k F+
  CDO69718.1 630 NLKGHMRSHAEEKPYLCKwpGCGKGFA 656
                 7999***************99****97 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.8e-05
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFk 25 
                 +rH   H + +py C+ C+k F+
  CDO69718.1 662 KRHEQLHLNIRPYPCEGCKKHFA 684
                 7*********************8 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.5   1.8e-05     0.064       1      23 [.     614     638 ..     614     639 .. 0.95
   2 !    7.1   1.8    0.0032        12       1      23 [.     644     668 ..     644     669 .. 0.89
   3 !   10.3   2.5   0.00031       1.1       1      22 [.     674     696 ..     674     697 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 f Cp+  Cg +F+++ +L+ H+++h
  CDO69718.1 614 FACPVpgCGSTFTRHFNLKGHMRSH 638
                 789*********************9 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0032
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + C++  Cgk F ++++ +rH + h
  CDO69718.1 644 YLCKWpgCGKGFARQHDCKRHEQLH 668
                 6688888**************9988 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00031
   zf-C2H2_4   1 fkCpiCgksFsskkaLlr.Hlkt 22 
                 ++C+ C+k F + +aL+r H+++
  CDO69718.1 674 YPCEGCKKHFARMDALNRhHCRK 696
                 89**************6637776 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0024       8.4       7      25 ..     621     639 ..     614     641 .. 0.87
   2 ?    6.3   1.1    0.0028        10       2      20 ..     674     692 ..     674     697 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
   zf-C2H2_6   7 CsksFpslqaLggHkksHr 25 
                 C+ +F    +L gH++sH 
  CDO69718.1 621 CGSTFTRHFNLKGHMRSHA 639
                 999999999*********5 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0028
   zf-C2H2_6   2 heCsvCsksFpslqaLggH 20 
                 + C  C+k F   +aL+ H
  CDO69718.1 674 YPCEGCKKHFARMDALNRH 692
                 78999************99 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.077   2.7e+02       6      29 ..     615     638 ..     612     643 .. 0.84
   2 ?    7.8   3.3    0.0014         5       6      27 ..     645     666 ..     641     691 .. 0.84
   3 ?   -2.0   0.1       1.7     6e+03      11      26 ..     678     693 ..     673     700 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.077
     FOXP-CC   6 vCkWPgCekvledveeflkhlnse 29 
                  C  PgC + ++ + ++  h++s+
  CDO69718.1 615 ACPVPGCGSTFTRHFNLKGHMRSH 638
                 6999*******9999999998764 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
     FOXP-CC   6 vCkWPgCekvledveeflkhln 27 
                 +CkWPgC k +  +++  +h +
  CDO69718.1 645 LCKWPGCGKGFARQHDCKRHEQ 666
                 6******999998888877755 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.7
     FOXP-CC  11 gCekvledveeflkhl 26 
                 gC+k++  ++++ +h 
  CDO69718.1 678 GCKKHFARMDALNRHH 693
                 8999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.61
# Mc/sec: 3713.42
//
Query:       CDO69719.1  [L=658]
Description: hypothetical protein BN946_scf184687.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-08   33.0   0.1    1.1e-07   31.6   0.1    1.8  1  DUF2415   Uncharacterised protein domain (DUF2415)
  ------ inclusion threshold ------
      0.038   13.9   0.1       0.96    9.5   0.1    2.9  2  PD40      WD40-like Beta Propeller Repeat
       0.13   11.2   0.0       0.47    9.4   0.0    1.8  2  Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping prot
       0.17   12.8   3.3         16    6.5   0.0    4.2  6  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> DUF2415  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   2.5e-11   1.1e-07       3      42 ..     374     412 ..     373     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.5e-11
     DUF2415   3 fRvckFSpesglnDLLvisEhvgrvHlvDlRtgldehqVi 42 
                 +R++kFSp+   ++ + ++Eh +  H+vD+R +++++ ++
  CDO69719.1 374 VRSVKFSPPGVGREVMTFTEHTSLLHVVDAR-TFETEEIV 412
                 8******************************.88887665 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11     5e+02      15      23 ..     231     239 ..     229     240 .. 0.87
   2 ?    9.5   0.1   0.00021      0.96       2      29 ..     282     308 ..     281     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 s+ PDG++l
  CDO69719.1 231 SIAPDGRTL 239
                 689****98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00021
                 EE--SSSS.EEEEEE-TTSSEEEEEEEC CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdR 29 
                 +++ + p+  ++ sfS DG+++a +S+ 
  CDO69719.1 282 TPVSSIPA-SFSTSFSADGSKFAVASQE 308
                 67788888.999***********99985 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.18   8.3e+02     201     219 ..     185     203 ..     143     253 .. 0.65
   2 ?    9.4   0.0   0.00011      0.47     185     217 ..     285     317 ..     264     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.18
    Ge1_WD40 201 alatasedGevkffqvyle 219
                  + ++ +d +vkf+ + + 
  CDO69719.1 185 RILVSNNDRTVKFYDIAVR 203
                 3445566666666666543 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqvy 217
                 ++ +   +++fs+dG   a+as++G+v  + v 
  CDO69719.1 285 SSIPASFSTSFSADGSKFAVASQEGVVVVWDVR 317
                 5555566789*****************999985 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         3   1.3e+04      13      29 ..      95     112 ..      79     113 .. 0.63
   2 ?    3.8   0.0     0.027   1.2e+02      12      38 .]     166     199 ..     151     199 .. 0.71
   3 ?   -1.8   0.0       1.6   7.3e+03      17      31 ..     231     245 ..     224     250 .. 0.70
   4 ?    6.5   0.0    0.0036        16      14      38 .]     285     315 ..     269     315 .. 0.77
   5 ?   -2.6   0.0       2.7   1.2e+04      13      21 ..     374     382 ..     367     383 .. 0.80
   6 ?   -3.5   0.0         4   1.8e+04       2      13 ..     386     397 ..     385     401 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3
                 EEEEE.EETTSSEEEEEE CS
        WD40  13 vtsla.fspdgawlasGs 29 
                 ++sl   + + ++la+G+
  CDO69719.1  95 ISSLIlPDTNDTLLAAGG 112
                 555554455556677776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.027
                 SE..EEEEEETTSSE......EEEEETTSEEEEEE CS
        WD40  12 sv..tslafspdgaw......lasGsdDgtvriWd 38 
                 sv  ts++fs+++        l  +  D+tv+++d
  CDO69719.1 166 SVmlTSMSFSRSNESaaepriL-VSNNDRTVKFYD 199
                 3444888888888888888844.4667******98 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
                 EEETTSSEEEEEETT CS
        WD40  17 afspdgawlasGsdD 31 
                 +  pdg+ l++ +d 
  CDO69719.1 231 SIAPDGRTLLCVGDS 245
                 568999999976754 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0036
                 EEEE......EETTSSEEEEEETTSEEEEEE CS
        WD40  14 tsla......fspdgawlasGsdDgtvriWd 38 
                 +s+       fs dg+ +a +s  g v +Wd
  CDO69719.1 285 SSIPasfstsFSADGSKFAVASQEGVVVVWD 315
                 44445555669********9**********9 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2.7
                 EEEEEEETT CS
        WD40  13 vtslafspd 21 
                 v+s++fsp 
  CDO69719.1 374 VRSVKFSPP 382
                 99*****96 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 4
                 EEEEEEESSSSE CS
        WD40   2 qclrtltGHssv 13 
                 + + t+t H+s 
  CDO69719.1 386 REVMTFTEHTSL 397
                 678899999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4350.85
//
Query:       CDO69720.1  [L=665]
Description: hypothetical protein BN946_scf184687.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4687.15
//
Query:       CDO69721.1  [L=1097]
Description: hypothetical protein BN946_scf184687.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-68  229.3   0.2    5.8e-68  228.5   0.2    1.4  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    3.3e-37  128.4   0.1    8.8e-37  127.0   0.1    1.8  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    1.2e-21   77.5   0.0    3.3e-21   76.1   0.0    1.7  1  AAA             ATPase family associated with various cellula
      6e-08   32.8   0.0    1.2e-07   31.8   0.0    1.5  1  AAA_5           AAA domain (dynein-related subfamily)
    1.3e-05   25.4   0.0    3.1e-05   24.2   0.0    1.6  1  AAA_2           AAA domain (Cdc48 subfamily)
    3.2e-05   23.8   0.6    0.00018   21.3   0.0    2.3  2  ChlI            Subunit ChlI of Mg-chelatase
    5.1e-05   22.3   0.0    9.8e-05   21.4   0.0    1.3  1  AAA_PrkA        PrkA AAA domain
    0.00018   21.9   0.1     0.0011   19.4   0.1    2.3  1  AAA_16          AAA ATPase domain
    0.00019   21.7   0.0     0.0025   18.1   0.0    2.5  1  AAA_22          AAA domain
    0.00038   20.2   0.0     0.0012   18.6   0.0    1.8  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0012   19.4   0.9     0.0039   17.7   0.0    2.2  2  AAA_18          AAA domain
     0.0031   17.5   0.0      0.015   15.3   0.0    2.1  2  AAA_14          AAA domain
     0.0049   16.6   0.0     0.0099   15.6   0.0    1.4  1  IstB_IS21       IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.073   13.5   0.0    2.2  2  RNA_helicase    RNA helicase
      0.028   14.8   0.2          1    9.8   0.4    2.8  2  DNTTIP1_dimer   DNTTIP1 dimerisation domain
      0.038   14.1   0.0       0.11   12.6   0.0    1.8  1  SKI             Shikimate kinase
      0.047   13.4   0.0        0.1   12.3   0.0    1.5  1  AAA_30          AAA domain
      0.056   13.3   0.2       0.54   10.2   0.1    2.6  2  NTPase_1        NTPase
      0.062   13.2   0.1        1.9    8.4   0.0    2.8  3  NACHT           NACHT domain
      0.067   13.1   0.0       0.17   11.8   0.0    1.6  1  RsgA_GTPase     RsgA GTPase
      0.069   12.3   0.1       0.27   10.4   0.1    1.9  2  TIP49           TIP49 P-loop domain
       0.11   12.8   0.0        6.6    7.0   0.0    2.5  2  AAA_28          AAA domain
       0.12   12.9   0.6       0.39   11.2   0.1    2.1  2  ABC_tran        ABC transporter
       0.14   11.9   0.0       0.26   11.0   0.0    1.5  1  AAA_24          AAA domain
       0.17   11.9   0.0       0.37   10.8   0.0    1.5  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.67    9.8  18.7       0.92    9.4   0.7    2.3  2  SPX             SPX domain
        7.7    7.0   5.7        5.4    7.5   0.0    2.3  2  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.5   0.2   8.7e-71   5.8e-68       1     203 [.     870    1079 ..     870    1081 .. 0.94

  Alignments for each domain:
  == domain 1  score: 228.5 bits;  conditional E-value: 8.7e-71
                  EE-TTTTHHHH-S-SS--SSSSS-.-BSSEEEEEEEETTE.EEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS....-T CS
       Lon_C    1 kvtakeleellGkkrfrseeaeke.dqvGvvtGlawtevG.GdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidke....vf 91  
                  k+t ++l++++G +++++++   +    Gv tGl +   G G ++ iea ++pgkg+l+ltGklg+v++esaq+als+ +s+a elgi k+    ++
  CDO69721.1  870 KITPENLKDYVGPPVYHKDRLYVHpPPAGVSTGLGYLGNGsGAVMPIEALSMPGKGNLQLTGKLGEVIRESAQIALSWTKSHAYELGITKTpeelFL 966 
                  5899***************987651678********988779*********************************************9764334478 PP

                  TT-EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGT.TTS-HHHHTS- CS
       Lon_C   92 ekkdihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdl.ediPeevreel 187 
                  ++kdih+h+PeG++ k+GPsaG++l++a+vsl+t+++++ d+amtGei+L G vlp+GGlkek+laa+ragik++i P +n++d+ e++Pe+v++++
  CDO69721.1  967 TDKDIHVHMPEGSIGKEGPSAGTALLSAFVSLFTKTQISPDIAMTGEISLVGMVLPVGGLKEKILAAHRAGIKTIIAPADNRTDIeENVPESVKTGI 1063
                  9************************************************************************************557********* PP

                  B--EESBHHHHHHHHB CS
       Lon_C  188 eiilveevdevlkaal 203 
                  ++++ve+v+evl++++
  CDO69721.1 1064 RFVYVEHVKEVLHEVF 1079
                  ************9876 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.1   1.3e-39   8.8e-37       2     208 .]     166     421 ..     165     421 .. 0.87

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 1.3e-39
  LON_substr_bdg   2 lpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaide.esiselysvGtvarIvqil.....rlddgr..ikvvle 88 
                     + +lp+ +++lfPg++  + +++p ++aai++++++++py+g fl+ + +++++d+ ++i+++++vG++a+I+ +      + dd++  +  vl+
      CDO69721.1 166 VLALPIARRPLFPGFYKAVVIRNPEVVAAIKEMMRRGQPYLGAFLL-KDENSDSDIiTDINSVHPVGVFAQITSVFtaagaKEDDKEegLTAVLY 259
                     6789******************************************.777778899999****************99999855543345****** PP

  LON_substr_bdg  89 gleRvkikklekekeegylvaeveiiedd..........................................s.epedsdslqkelkalvqeiiek 140
                     +++R++i++l    ++g  +a+ve+ e+                                           +   + ++++++ ++a+++ei++ 
      CDO69721.1 260 PHRRIRITEL----VKGGQTAKVEPAEEAkpeataelesqlptppperqgppmamqtsflekynvsvvnveNlATQPYSKDDQHIRAFMSEIVSV 350
                     **********....556669999888777899999999999999999999999999999999999888775376666666667************ PP

  LON_substr_bdg 141 ikks.....larellkllleielllkyedlenpyrLadlvaailpfsneekqelLeeldvedRlkkvlelLkr 208
                     +k++     l+r ++ +++ i+++   +++++p +Lad++aa+  ++++e+q++Le l v+dRl k+l  Lk+
      CDO69721.1 351 FKDIaqlnpLFRDQIANFS-INQV-ASNVFDEPDKLADFAAAVSTGEPQELQDVLESLVVKDRLSKALLVLKK 421
                     ***455778*********5.5554.57899**************************************99985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0     5e-24   3.3e-21       1     126 [.     572     708 ..     572     713 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 5e-24
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++l+GppG+GKT++ k++a+ l+++f+++s+  l++          yvg+ + ki + ++++ +++    ++iDE+d++++         + + +++Ll
  CDO69721.1 572 ICLVGPPGVGKTSIGKSIARALNRQFFRFSVGGLTDVaeikghrrtYVGALPGKIIQALRRVGTEN--PLVLIDEVDKIGRGH-------NGDPASALL 661
                 69*********************************6699***********************9998..99*********8888.......899****** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdr 126
                 ++ld +++              s+v++++++n  d+++ +ll +R+++
  CDO69721.1 662 EMLDPEQNTafldhymdvpvdLSRVLFVCTANMLDTIPAPLL-DRMEV 708
                 *********************999******************.**986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.8e-10   1.2e-07       2     137 ..     572     705 ..     571     706 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.8e-10
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG-....-HHHHHHHHHHHHSSEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEvera....esevlnsLlslleerrll 95 
                 ++LvGppG+gK+++ +++a+alnr+++       t  +++kg+r++  +       ++l r ++e  ++++DEv+++    + + +++Ll +l+ ++  
  CDO69721.1 572 ICLVGPPGVGKTSIGKSIARALNRQFFRFSVGGLTDVAEIKGHRRTYvGALPGKIIQALRRVGTENPLVLIDEVDKIgrghNGDPASALLEMLDPEQNT 670
                 79*******************************************8642222333455555666***********983332356778888888876655 PP

                 ..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5  96 leeggelvkaknddllerfrviatanpldrslnelspalrsR 137
                  + ++++++++ d  l+r+ ++ tan ld     + ++l++R
  CDO69721.1 671 -AFLDHYMDVPVD--LSRVLFVCTANMLD----TIPAPLLDR 705
                 .556666666554..45577777777777....666666666 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.7e-08   3.1e-05       6     130 ..     572     695 ..     569     724 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.7e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.............EEEEETGGG------------ CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.............ivllDEidKihpkessgadvS 91 
                 i l+gp gvGkt + k++a+ l+    +++ r+    l+        v++ +g +  yvga  g               vl+DE+dKi +         
  CDO69721.1 572 ICLVGPPGVGKTSIGKSIARALN----RQFFRFSVGGLTD-------VAEIKGHRRTYVGALPGKiiqalrrvgtenpLVLIDEVDKIGR--GH----- 652
                 6789******************9....6888888888887.......4444444444444444444444444667778************..22..... PP

                 -HHHHHHHHHHHH--EE-...----.--EE-TT-EEEEEE--T CS
       AAA_2  92 regVqrdLLqileggtlt...dkqg.rkvdtknilfImtgafg 130
                 + +   +LL +l+  + t   d++   +vd + +lf++t ++ 
  CDO69721.1 653 NGDPASALLEMLDPEQNTaflDHYMdVPVDLSRVLFVCTANML 695
                 2366889*****965555555777769************9975 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.6     1e+03      23      54 ..     846     876 ..     838     878 .. 0.79
   2 !   21.3   0.0   2.7e-07   0.00018       7     121 .]     922    1047 ..     916    1047 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.6
        ChlI  23 keskervrsalknsgfefpakkitvnLaPadl 54 
                 ke kerv ++++   +++p++ + v ++P +l
  CDO69721.1 846 KEDKERVVTTVERKPMKVPET-VHVKITPENL 876
                 99***********99999975.5666666655 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.7e-07
        ChlI    7 kglpkftivGlpdtavkeskervrsalkn...........sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldG 92  
                   g+ +++++G + + ++es +   s  k+            +  + +k i v +   ++ keG++   ++  + ++   +++ + ++ + Ge+sl G
  CDO69721.1  922 PGKGNLQLTGKLGEVIRESAQIALSWTKShayelgitktpEELFLTDKDIHVHMPEGSIGKEGPSAGTALLSAFVSLFTKTQISPDIAMTGEISLVG 1018
                  5666677777777777777777777776656666555555556677899999999999*****9988888888888899999999************ PP

        ChlI   93 slrpvkgvlpialaakkegikkvivpken 121 
                   + pv g+ + +laa+++gik++i p++n
  CDO69721.1 1019 MVLPVGGLKEKILAAHRAGIKTIIAPADN 1047
                  **************************988 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-07   9.8e-05      57     114 ..     538     595 ..     529     606 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.5e-07
    AAA_PrkA  57 pafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkllea 114
                 +++++d +Gl+e+ ++i+e++     r+ ++ +i+ l+GP g Gk+s+ +++ ++l+ 
  CDO69721.1 538 KVLDDDHYGLKEVKDRILEFLAVGKLRGTVEGKIICLVGPPGVGKTSIGKSIARALNR 595
                 56789***********************************************999976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.7e-06    0.0011      24      63 ..     567     608 ..     545     644 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.7e-06
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                     ++ l+G++GvGK+s+ ++++ral+++ + f  g  ++ 
  CDO69721.1 567 VegKIICLVGPPGVGKTSIGKSIARALNRQFFRFSVGGLTDV 608
                 23489*************************444433333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-06    0.0025       5     105 ..     569     652 ..     565     688 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.8e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqh 102
                  +i++++G++G+GKT   + +++ l         +++++++ + ++t+        +++ g+++ +      +l  ++ qalr+ ++  +l++iDE+++
  CDO69721.1 569 GKIICLVGPPGVGKTSIGKSIARAL---------NRQFFRFSVGGLTDV-------AEIKGHRRTY----VGALPGKIIQALRRVGTeNPLVLIDEVDK 647
                 689**********************.........999999999988854.......5555543333....55677899999999999999999999999 PP

      AAA_22 103 lr..s 105
                 +   +
  CDO69721.1 648 IGrgH 652
                 85441 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.8e-06    0.0012       7      61 ..     542     597 ..     537     613 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.8e-06
      RuvB_N   7 eeyigqekvkeklkifieaakkreealdhvl.lyGpPGlGkttlakiiakelgvkl 61 
                 +++ g ++vk+++  f++  k r++    ++ l+GpPG+Gkt++ k ia+ l+ ++
  CDO69721.1 542 DDHYGLKEVKDRILEFLAVGKLRGTVEGKIIcLVGPPGVGKTSIGKSIARALNRQF 597
                 578999******************9988765499*****************99876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       4.7   3.1e+03      37      67 ..     446     477 ..     409     498 .. 0.52
   2 !   17.7   0.0   5.8e-06    0.0039       1      25 [.     572     602 ..     572     648 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.7
      AAA_18  37 lllevdpe.aldeskrldedkldklldaleen 67 
                  ++  ++   +++++ ++ d  dkl+++++e 
  CDO69721.1 446 EYYLMEQLkNIKKELGMESDGKDKLIEKFKER 477
                 22222222234555555555555555555554 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 5.8e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......g 25 
                 I+l G+pGvGKt+++k +++ l+       +
  CDO69721.1 572 ICLVGPPGVGKTSIGKSIARALNRqffrfsV 602
                 9******************998555555543 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.8   2.5e+03      30      63 ..     317     355 ..     309     417 .. 0.56
   2 !   15.3   0.0   2.3e-05     0.015       2      77 ..     569     654 ..     568     717 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.8
      AAA_14  30 kesilyinldderdkkladpekllelileklke.....e 63 
                 k ++  +n+++  ++ +++ ++ ++++++++ +      
  CDO69721.1 317 KYNVSVVNVENLATQPYSKDDQHIRAFMSEIVSvfkdiA 355
                 556677777777776666555556666655322122231 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.3e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe.....kllelileklke..ekktylflDEiqev.....p 77 
                 +ki++++G+  vGKT + k +++ l    ++++ +++   +d    k +   +      l+  i + l++   ++ ++++DE+ ++      
  CDO69721.1 569 GKIICLVGPPGVGKTSIGKSIARALN---RQFFRFSVGGLTDvaeiKGH---RrtyvgALPGKIIQALRRvgTENPLVLIDEVDKIgrghnG 654
                 699*******************9988...99999998887774333222...122355444444443222446899*******998666551 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05    0.0099      15      85 ..     536     607 ..     529     668 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
   IstB_IS21  15 aqktledidfraarsldkrkvkeLatlsf..iekkenivllGpsGvGKshlaialgveavraglsvlfvrved 85 
                 aqk+l+d ++  + +++ r+++ La ++   + + + i+l+Gp+GvGK+ +  +++++  r+ ++ +   ++d
  CDO69721.1 536 AQKVLDDDHYGLK-EVKDRILEFLAVGKLrgTVEGKIICLVGPPGVGKTSIGKSIARALNRQFFRFSVGGLTD 607
                 6788877666655.8899999988777661144566799****************999888877666555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.3   2.2e+03      38      77 ..     334     373 ..     311     383 .. 0.74
   2 ?   13.5   0.0   0.00011     0.073       1      37 [.     572     620 ..     572     693 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.3
  RNA_helicase  38 npeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlv 77 
                   +++d++   + ++ v v+ D++q +    +++ ++ i+ v
    CDO69721.1 334 SKDDQHIRAFMSEIVSVFKDIAQLNPLFRDQIANFSINQV 373
                   4789999999999999999999988655555444444444 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00011
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl............klkkkdsvysr 37 
                   i+l+Gp+g+GK+++ k++a+al +++            + k + ++y++
    CDO69721.1 572 ICLVGPPGVGKTSIGKSIARALNRQFfrfsvggltdvaEIKGHRRTYVG 620
                   799********************99877777766666655666666665 PP

>> DNTTIP1_dimer  DNTTIP1 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4    0.0015         1       4      51 ..     422     470 ..     421     500 .. 0.81
   2 ?    1.2   0.0       0.7   4.7e+02      22      45 ..     765     788 ..     760     794 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
  DNTTIP1_dimer   4 dLLrkvlQpainkevdevikkylrkvf.kpAveNireNlgeevvteadv 51 
                    +L+ + lQ+++ ++vd  i k  r+++ ++  +Ni++ lg e++ ++++
     CDO69721.1 422 ELINAQLQSKLARDVDSKIAKRQREYYlMEQLKNIKKELGMESDGKDKL 470
                    577889*********987777777665499*************987764 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.7
  DNTTIP1_dimer  22 ikkylrkvfkpAveNireNlgeev 45 
                    +kk++ k++++A+  i + lgeev
     CDO69721.1 765 LKKHIDKIYRKAALKIVRDLGEEV 788
                    689*************99999998 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00017      0.11       1      21 [.     578     598 ..     578     600 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+++Gk +A++l+++f+
  CDO69721.1 578 PGVGKTSIGKSIARALNRQFF 598
                 69*****************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016       0.1      19      67 ..     570     620 ..     563     663 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa..ggrviglAptgkaAkvLaeelg 67 
                 ++ +l+Gp+G GKt + k++++a++++   ++v gl+  ++     ++ +g
  CDO69721.1 570 KIICLVGPPGVGKTSIGKSIARALNRQffRFSVGGLTDVAEIKGHRRTYVG 620
                 5889*******************9999444666666655555555555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00081      0.54       2      33 ..     572     605 ..     571     620 .. 0.78
   2 ?   -0.5   0.0       1.6     1e+03      84     106 ..     625     647 ..     613     667 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00081
                 EEEE--TTSSHHHHHHHHHHHH.....GGGEEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss..gvkvgGf 33 
                 +++ GppGvGKt + k ++++l+++   ++vgG+
  CDO69721.1 572 ICLVGPPGVGKTSIGKSIARALNRQffRFSVGGL 605
                 6789******************988555567775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHH-EEEE---ST CS
    NTPase_1  84 lalealrkalseadviviDEiGk 106
                  +++alr+  +e+ +++iDE+ k
  CDO69721.1 625 KIIQALRRVGTENPLVLIDEVDK 647
                 578999*9999999******965 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.42   2.8e+02      86     125 ..     377     419 ..     318     455 .. 0.74
   2 ?    8.4   0.0    0.0029       1.9       2      26 ..     571     595 ..     570     601 .. 0.90
   3 ?   -2.4   0.0         6     4e+03     123     162 ..     686     726 ..     631     728 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.42
                 EEE-STT-SS-TCH............HHHHHCTTTTT--EEEE CS
       NACHT  86 ilDglDelvtdlgq...kekqpvrtlLselirkkllpeaslll 125
                 ++D  D+l++   +    e+q+++++L++l+ k  l++a l+l
  CDO69721.1 377 VFDEPDKLADFAAAvstGEPQELQDVLESLVVKDRLSKALLVL 419
                 7777788776444488899**************9999998886 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0029
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                 +++l G++G+GKT   +++a+a+ +
  CDO69721.1 571 IICLVGPPGVGKTSIGKSIARALNR 595
                 689*****************99876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6
                 EEEEEECCCHHHHCTTSSCE...EEEE--TCCHHHHHHHHC CS
       NACHT 123 llltvrpralrdleeqleea.ivlevegfsesrrkqlvrky 162
                 +l  ++ + l  ++  l +  +vlev g + ++ +q+++ky
  CDO69721.1 686 VLFVCTANMLDTIPAPLLDRmEVLEVSGYVSEEKAQIASKY 726
                 34444444444444444444467777777777777777776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.17      90     122 ..     560     592 ..     533     602 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe 122
                  + +l+  +++k+++lvG+ GvGK+++ ++++  
   CDO69721.1 560 VGKLRGTVEGKIICLVGPPGVGKTSIGKSIARA 592
                  6689999******************98888765 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00041      0.27      47      78 ..     566     597 ..     554     611 .. 0.87
   2 ?   -2.0   0.0       2.4   1.6e+03     177     217 ..     943     983 ..     933     985 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  47 klaGravLlaGpsgtGktalaiaiskelgedv 78 
                 ++ G+ + l+Gp+g Gkt++  +i+++l+++ 
  CDO69721.1 566 TVEGKIICLVGPPGVGKTSIGKSIARALNRQF 597
                 6789************************9764 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
                 EEEETTT--EEE-SSS-SS------S--------S---S-- CS
       TIP49 177 iviekesGkvkklGrsearakefDiekdefvelPkGevekk 217
                 i +  ++ +   lG +++ ++ f  +kd  v++P+G + k+
  CDO69721.1 943 IALSWTKSHAYELGITKTPEELFLTDKDIHVHMPEGSIGKE 983
                 6666667777889999999999999***********99885 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.16   1.1e+02       6      43 ..     461     499 ..     460     520 .. 0.78
   2 ?    7.0   0.0    0.0099       6.6       2      22 ..     572     592 ..     571     611 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.16
      AAA_28   6 GgestGKTtlleaLaargypvv.pEaareileeklakge 43 
                 G es GK  l+e++++r      pEa+r++++e+l k  
  CDO69721.1 461 GMESDGKDKLIEKFKERAAALKmPEAVRKVFDEELNKLM 499
                 77999************666544**********997754 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0099
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 i+++G+++ GKT++ + +a+ 
  CDO69721.1 572 ICLVGPPGVGKTSIGKSIARA 592
                 89***********99998865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       8.5   5.7e+03     110     115 ..     392     397 ..     324     478 .. 0.57
   2 ?   11.2   0.1   0.00058      0.39      10      36 ..     568     594 ..     565     610 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.5
                 -HHHHH CS
                 xxxxxx RF
    ABC_tran 110 SgGqkq 115
                 S G+ q
  CDO69721.1 392 STGEPQ 397
                 333332 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00058
                 TTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllk 36 
                 eg+++ +vG+ G GK+++ k +a+ l+
  CDO69721.1 568 EGKIICLVGPPGVGKTSIGKSIARALN 594
                 799*******************99765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00039      0.26       3      27 ..     570     593 ..     568     650 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkpl 27 
                 + i+++Gp+g+GKT++ k++  ++l
  CDO69721.1 570 KIICLVGPPGVGKTSIGKSI-ARAL 593
                 679*************9999.6555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00055      0.37      16      44 ..     566     594 ..     548     602 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00055
                 HCH.TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  16 kal.gdvilLeGdLGaGKTtlvrglakalg 44 
                 + + g++i+L G+ G+GKT + +++a+al+
  CDO69721.1 566 T-VeGKIICLVGPPGVGKTSIGKSIARALN 594
                 3.24789********************996 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.9     0.016        11      59     171 ..      83     250 ..      63     347 .. 0.63
   2 ?    9.4   0.7    0.0014      0.92      24     108 ..     764     851 ..     763     893 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.016
         SPX  59 kssertepstsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpa...................... 135
                  ++++te+st+a+ +++   + ++s+s+p++   s p++s+  +ss+sss  g+   +pps+ ++++ ++s++s ++                      
  CDO69721.1  83 RDQQSTEQSTPADKSDARLDKPEDSQSTPPA---SAPPSSTPPSSSSSSSGDGSDDGDPPSPPPPDHPPPSPTSISKqsvpesypqvlalpiarrplfp 178
                 2222233333332222222222222222222...34444444444444555555555555554544444444444445568888888888888888888 PP

         SPX 136 .................................dssssssssesesssssspsllrrlfs...esesreeks 171
                                                  ++++s+s+  ++ +s ++  ++ ++ s   ++  +e+++
  CDO69721.1 179 gfykavvirnpevvaaikemmrrgqpylgafllKDENSDSDIITDINSVHPVGVFAQITSvftAAGAKEDDK 250
                 888888888888888888888888888888888777777777777777777777777766665333333333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
         SPX  24 qLKKlIkkvqr..ele.slgleaetlrellnrpedskkkssertepstsaaadesgnsaadasssepkdeaeslprrsplsrssrsss 108
                  LKK+I k+ r  +l+    l+ e+  e + +p ++  + s ++++s++++a+ +++ ++++++ +++  +e++++r+++++++++++
  CDO69721.1 764 NLKKHIDKIYRkaALKiVRDLGEEVFPEPTPEPAPAAEATSADRSKSEDNTAQVASTVEKQDAPPDTPGAPETSTPRTSSEDKEDKER 851
                 69*******9977788888888888888888888887777774444444444433334444444444444445555555555555544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   2.8       1.9   1.2e+03     153     178 ..     431     477 ..     334     503 .. 0.56
   2 ?    7.5   0.0    0.0082       5.4      18      50 ..     568     600 ..     546     622 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.9
      AAA_23 153 e....................rleelekeleeled.ekkllekleqe 178
                 +                    +l++++kel  ++d ++kl+ek +++
  CDO69721.1 431 KlardvdskiakrqreyylmeQLKNIKKELGMESDgKDKLIEKFKER 477
                 01111222222233334444477777777766666444455555443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0082
      AAA_23  18 skgltlItGpNGaGKTTildAiklaLygetprl 50 
                 + ++ +++Gp G GKT+i   i  aL  ++ r+
  CDO69721.1 568 EGKIICLVGPPGVGKTSIGKSIARALNRQFFRF 600
                 66899**************99999998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1097 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 6871.72
//
Query:       CDO69722.1  [L=73]
Description: hypothetical protein BN946_scf184687.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 524.33
//
Query:       CDO69723.1  [L=846]
Description: hypothetical protein BN946_scf184687.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5817.32
//
Query:       CDO69724.1  [L=873]
Description: hypothetical protein BN946_scf184687.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-15   55.6   0.0    8.2e-15   54.7   0.0    1.4  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.072   13.5   0.3      0.072   13.5   0.3    3.0  4  DUF4620   Domain of unknown function (DUF4620)


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   9.2e-19   8.2e-15       1      55 [.      50     104 ..      50     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 9.2e-19
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTT CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvv 55 
                 t++ l++h +k+d+w+ai gkVY+++++l +hpGge+ +++ aG+D t++f  ++
  CDO69724.1  50 TPSMLKEHRSKDDAWTAISGKVYNITHYLPYHPGGEKELMRVAGRDGTKLFGPFS 104
                 67889*********************************************98775 PP

>> DUF4620  Domain of unknown function (DUF4620)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.6         2   1.8e+04      37      61 ..       8      29 ..       2      32 .. 0.55
   2 ?   13.5   0.3     8e-06     0.072      26      91 ..     324     389 ..     309     410 .. 0.84
   3 ?   -2.8   0.6      0.89   7.9e+03       8      66 ..     563     621 ..     558     658 .. 0.62
   4 ?   -1.6   0.0      0.38   3.4e+03      16      45 ..     685     714 ..     681     743 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2
     DUF4620 37 mppaaaqpsamgalvppatahepld 61
                 pp  a+ps  g  v  a  h pld
  CDO69724.1  8 KPP--AKPSKRG-KVALAPGHGPLD 29
                333..5677777.555566666655 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 8e-06
     DUF4620  26 psrdqeapgssmppaaaqpsamgalvppataheplddpalhwlacgcclslpaqlplairlgrdld 91 
                   r q apg+s        s       pat+++p +    h l  +  l lp+ + lair    ld
  CDO69724.1 324 TPRSQSAPGASRDEDIEIASHTSMSTEPATSPQPSEPLPSHLLEKCRSLLLPSIVQLAIRRNPGLD 389
                 3499********99998888888889********999899*******************9877766 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.89
     DUF4620   8 ssqsgvktpvrwtespgqpsrdqeapgssmppaa.aqpsamgalvppataheplddpalh 66 
                 s q     p  w  s         + g+  p  a + p +  al p  +       pa h
  CDO69724.1 563 SGQMHAPLPAEWGSSSASSVERALSAGTDHPSVAfSHPISATALTPRLSLSR-ARSPAEH 621
                 5555555667776666655555555566666555256666666666554443.4555555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.38
     DUF4620  16 pvrwtespgqpsrdqeapgssmppaaaqps 45 
                 p  w+   g+ps d e     +  a+a+ +
  CDO69724.1 685 PALWAAIGGKPSSDVEEVHFFVDDATADAA 714
                 888999999999998877666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5933.97
//
Query:       CDO69725.1  [L=234]
Description: hypothetical protein BN946_scf184687.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-13   49.0   0.0    1.9e-07   30.6   0.0    2.1  2  ECH_1     Enoyl-CoA hydratase/isomerase
    6.4e-05   22.6   0.0    0.00045   19.8   0.0    1.9  2  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.069   13.5   0.0        0.1   13.0   0.0    1.3  1  TED       Thioester domain


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.3e-11   1.9e-07       4      57 ..      20      75 ..      17     107 .. 0.88
   2 !   16.7   0.0     6e-07    0.0036     168     251 .]     127     211 ..     116     211 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.3e-11
                TTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTS..EEEEEB CS
       ECH_1  4 agvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdk..aFaaGa 57
                 +vav++l r ++ N++   l +++++a   l+ d  vr+vvLt  ++  aF+aG 
  CDO69725.1 20 GAVAVVTLARTKERNTFIGPLAHDIVKAYDILDRDDRVRVVVLTAEPNapAFCAGV 75
                68*******************************************777337***96 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 6e-07
                 TSSSEEESG.GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH------ CS
       ECH_1 168 Glvdkvvpe.eqlleealelaeklaekspaalrqlkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefedk 251
                 Gl   ++p+ e++   al+la+ lae+ +  + ++++al     d+ +eq  ++++    +  + d +eG  af+ +r p+f+dk
  CDO69725.1 127 GLYYSILPNkEDVFPAALALAKDLAENTSGTAIAVTKALVWRGYDNIEEQHIVDSRAIRILARSPDAEEGALAFKQRRAPKFGDK 211
                 888999999899****************************999999************************************985 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.5e-08   0.00045       2      52 ..      23      74 ..      22      81 .. 0.92
   2 ?    0.5   0.0     0.056   3.3e+02     253     317 ..     147     208 ..     130     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.5e-08
                EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSS.ECE-- CS
       ECH_2  2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagek.afCAG 52
                +v+tL r k+ N    ++++++ +a++  ++dd+v++vvl+++ +  afCAG
  CDO69725.1 23 AVVTLARTKERNTFIGPLAHDIVKAYDILDRDDRVRVVVLTAEPNApAFCAG 74
                799*************************************9976545****9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.056
                 HHHHH.HS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS------- CS
       ECH_2 253 letlk.krsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPkW 317
                 ++ l+ + s t+++vt +++ rg +   ++e    + r+++ l++++D  eG   l  ++ ++Pk+
  CDO69725.1 147 AKDLAeNTSGTAIAVTKALVWRGYDN--IEEQHIVDSRAIRILARSPDAEEGA--LAFKQRRAPKF 208
                 44444267899999999999999987..9999999***99999999*****95..44555666665 PP

>> TED  Thioester domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05       0.1      42      73 ..     134     174 ..      96     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
         TED  42 pnk.........lseeeggltdddayaaTQaAIWyftdgvd 73 
                 pnk         l +++ ++t+ +a+a+T+a++W+  d+++
  CDO69725.1 134 PNKedvfpaalaLAKDLAENTSGTAIAVTKALVWRGYDNIE 174
                 44477777888888888999**************8887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1645.51
//
Query:       CDO69726.1  [L=344]
Description: hypothetical protein BN946_scf184687.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-30  105.8   3.9    1.2e-30  105.8   3.9    4.0  3  DFRP_C        DRG Family Regulatory Proteins, Tma46
      2e-06   27.5   9.9    2.5e-06   27.2   0.8    2.6  3  zf-CCCH       Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    2.2e-05   24.3   5.7    2.2e-05   24.3   5.7    3.1  3  zf_CCCH_4     Zinc finger domain
    4.8e-05   24.0  18.3    8.9e-05   23.2   5.0    3.3  3  Torus         Torus domain
    7.1e-05   22.5  10.5    0.00021   21.0   1.2    3.2  3  zf-CCCH_4     CCCH-type zinc finger
     0.0017   18.5   4.3       0.04   14.1   0.1    3.2  3  zf-CCCH_3     Zinc-finger containing family
     0.0025   18.2   7.5       0.38   11.3   2.8    2.6  2  zf-CCCH_2     RNA-binding, Nab2-type zinc finger
  ------ inclusion threshold ------
       0.71    8.6  15.4       0.38    9.5   4.3    2.3  2  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.5  15.1         8   1.8e+04      57      81 ..      43      67 ..      11      75 .. 0.43
   2 ?    4.5   0.5     0.022        49      57      89 .]     116     146 ..      96     146 .. 0.82
   3 !  105.8   3.9   5.4e-34   1.2e-30       1      89 []     214     305 ..     214     305 .. 0.96

  Alignments for each domain:
  == domain 1  score: -8.5 bits;  conditional E-value: 8
      DFRP_C 57 relfefnpelaedddeeeeeeeeea 81
                r+ +e ++e a +++ + eee++++
  CDO69726.1 43 RAALEKEKEKAMREKAKMEEEKRKK 67
                4444444444444444444333332 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.022
      DFRP_C  57 relfefnpelaedddeeeeeeeeeawdleefre 89 
                 r++   +++l++d+ e++ +++ ++wd e++r+
  CDO69726.1 116 RKVE--KKNLYQDSREDKATDTMDKWDEEKLRK 146
                 5543..589999999999999999****99875 PP

  == domain 3  score: 105.8 bits;  conditional E-value: 5.4e-34
      DFRP_C   1 kitLEefiEteRakLdkklTpvtletFakWKkkrlekkeaeeekeekkkkke.......glsGrelfefnpelaedddeeeeeeeeeawdleefre 89 
                 +i+LEef+E eR+kL+++lTpvt+etFakWK++r++kk aeee+ +k+k+++       g+sGr+lf++npe++ed++e++ee+    wdl+++r+
  CDO69726.1 214 QISLEEFLEVERHKLGPNLTPVTPETFAKWKRTRIDKKMAEEEALRKAKDEKhaagkssGMSGRDLFTYNPEWFEDEEEADEED----WDLAKYRK 305
                 69********************************************9999999**************************99976....***99985 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.8   1.1e-09   2.5e-06       1      26 [.      87     111 ..      87     112 .. 0.90
   2 ?   -3.4   0.2       4.6     1e+04       6       9 ..     163     166 ..     162     166 .. 0.67
   3 !    6.7   0.2    0.0031         7      14      25 ..     180     191 ..     173     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.1e-09
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 +kt+lC f++  G+C  G++CkF+H+
  CDO69726.1  87 PKTVLCAFYKA-GTCEKGNKCKFSHD 111
                 69*****7766.*************6 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                 BCHH CS
     zf-CCCH   6 Crff 9  
                 C++f
  CDO69726.1 163 CKYF 166
                 7776 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0031
                 --TTGGG-SSBS CS
     zf-CCCH  14 yCkyGdrCkFaH 25 
                 +C+ G+ C++ H
  CDO69726.1 180 ECPNGELCHYRH 191
                 7*********88 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   5.7   9.8e-09   2.2e-05       1      19 []      92     110 ..      92     110 .. 0.99
   2 ?    0.5   0.4      0.31   6.9e+02       1       6 [.     163     168 ..     163     168 .. 0.89
   3 !    8.1   0.8    0.0012       2.8       9      19 .]     181     191 ..     180     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 9.8e-09
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C f+++GtC kG+kC+F+H
  CDO69726.1  92 CAFYKAGTCEKGNKCKFSH 110
                 99***************** PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
   zf_CCCH_4   1 Ckfflq 6  
                 Ck+f+q
  CDO69726.1 163 CKYFIQ 168
                 ****87 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0012
   zf_CCCH_4   9 CkkGdkCrFaH 19 
                 C++G+ C+++H
  CDO69726.1 181 CPNGELCHYRH 191
                 *********** PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   5.0     4e-08   8.9e-05       2     100 ..      19     119 ..      18     128 .. 0.69
   2 !    9.9   0.6   0.00053       1.2      50      96 ..     143     196 ..     115     211 .. 0.61
   3 ?   -1.8   0.5       2.2     5e+03      30      55 ..     282     307 ..     244     321 .. 0.56

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4e-08
                 XXX----S-SS--------SSS-----TTSS----S-THHHHS-----S----HHHH----HHH..HSTT--B-HHHHHT--SSGGG-SSB-S---SS- CS
       Torus   2 kkrparkqvdeeelksekeeqegeeyNiWynkwsgeekekkkkskekaktrcnikkdsGytkad..kekesyfClfFarGlCakGkkCeylHrlPteed 98 
                 k+++a++q + + ++++++++  +   +  +k +  ++++k++++++ k    + k   + k       ++++C f+  G+C kG+kC++ H+l   ++
  CDO69726.1  19 KNKSAKVQKQIAAIEKQQAQAGKSRAALEKEKEKAMREKAKMEEEKRKKEEAALFKPVQTQKVPfgVDPKTVLCAFYKAGTCEKGNKCKFSHDLNIGRK 117
                 68999999988888666555555666666666665555555555555555555555555555444356788*********************9976666 PP

                 -- CS
       Torus  99 lk 100
                 ++
  CDO69726.1 118 VE 119
                 44 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
                 S----HHHH----HHHHSTT--B-HHHHHT-..........-SSGGG-SSB-S---S CS
       Torus  50 ktrcnikkdsGytkadkekesyfClfFarGl..........CakGkkCeylHrlPte 96 
                 k r  +  ++G  + +   + ++C +F + +          C++G+ C+y H lP  
  CDO69726.1 143 KLRKVVLSKAGNPRTT---TDIVCKYFIQAIetekygwfweCPNGELCHYRHALPPG 196
                 5555555555554444...4466666665433333333444**************64 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.2
                 TSS----S-THHHHS-----S----H CS
       Torus  30 Wynkwsgeekekkkkskekaktrcni 55 
                 +  +w ++e+e+++++ + ak+r + 
  CDO69726.1 282 YNPEWFEDEEEADEEDWDLAKYRKQQ 307
                 33344444444444445555555444 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.2   9.5e-08   0.00021       1      22 []      90     111 ..      90     111 .. 0.95
   2 ?    3.4   0.0     0.031        69       2       8 ..     162     168 ..     161     170 .. 0.83
   3 ?    3.1   0.6     0.039        87      11      21 ..     181     191 ..     180     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 9.5e-08
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsHd 22 
                 +lC ++ +G C  G++C+FsHd
  CDO69726.1  90 VLCAFYKAGTCEKGNKCKFSHD 111
                 5899*****************9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.031
   zf-CCCH_4   2 lCpyfak 8  
                 +C+yf++
  CDO69726.1 162 VCKYFIQ 168
                 8****97 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.039
   zf-CCCH_4  11 CrfGdnCrFsH 21 
                 C  G+ C ++H
  CDO69726.1 181 CPNGELCHYRH 191
                 9********** PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.6      0.76   1.7e+03      60      95 ..      25      59 ..      12      74 .. 0.60
   2 !   14.1   0.1   1.8e-05      0.04       8      27 ..      92     111 ..      86     148 .. 0.87
   3 ?    4.2   0.0     0.022        49      12      27 ..     177     192 ..     167     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.76
   zf-CCCH_3 60 krkeipcywenqpaGcqklhcaflhekpravdglll 95
                 +k+i+   e+q a + k ++a+ +ek++a+ +++ 
  CDO69726.1 25 VQKQIAA-IEKQQAQAGKSRAALEKEKEKAMREKAK 59
                4445544.4666666677777777777776655443 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                 c f+   tc+kG++c f h 
  CDO69726.1  92 CAFYKAGTCEKGNKCKFSHD 111
                 99****************96 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.022
   zf-CCCH_3  12 yystctkGdscpfrhe 27 
                 ++  c  G+ c +rh+
  CDO69726.1 177 WFWECPNGELCHYRHA 192
                 4458***********6 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   2.8   0.00017      0.38       2      17 ..      92     110 ..      91     110 .. 0.95
   2 !    8.9   0.2   0.00096       2.1       2      17 ..     163     191 ..     163     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C f+ +  C ++ kC+F+H
  CDO69726.1  92 CAFYKAgtCeKGNKCKFSH 110
                 999*99************* PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00096
   zf-CCCH_2   2 Crffpn............C.tnpkCpFaH 17 
                 C++f+             C  ++ C+++H
  CDO69726.1 163 CKYFIQaietekygwfweCpNGELCHYRH 191
                 888888888888888888*99******** PP

>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.3    0.0052        12     313     340 ..      43      70 ..       6      91 .. 0.84
   2 ?    9.5   4.3   0.00017      0.38     307     368 ..     245     301 ..     197     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0052
                   HHHHTT-HHHHHHHHHHHHHHHHHHHHH CS
  Oxysterol_BP 313 raleegdideAeeeKkrlEekQRerrke 340
                   ra  e++ ++A++eK ++Ee++R+++ +
    CDO69726.1  43 RAALEKEKEKAMREKAKMEEEKRKKEEA 70 
                   7778888999**********99998765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00017
                   GG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT----SSEEEEETTTTSSCEEEC- CS
  Oxysterol_BP 307 RlRpDqraleegdideAeeeKkrlEekQRerrkereekkewkpkwFekekdpdtgeevwkyk 368
                   R+R D+++ ee  +++A++eK+   ++  ++ +      +++p+wFe e++   +ee w   
    CDO69726.1 245 RTRIDKKMAEEEALRKAKDEKHAAGKSSGMSGRDLF---TYNPEWFEDEEE--ADEEDWDLA 301
                   899999999999999999999999999888888653...689****98887..677888653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2533  (0.141279); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 2364.83
//
Query:       CDO69727.1  [L=374]
Description: hypothetical protein BN946_scf184687.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-41  140.2   2.8    7.2e-41  139.3   2.8    1.4  1  Torus        Torus domain
    4.7e-05   23.3   0.0    8.6e-05   22.5   0.0    1.4  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
    0.00011   21.9   0.0    0.00022   21.0   0.0    1.6  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
  ------ inclusion threshold ------
      0.075   13.1   5.3       0.14   12.2   5.3    1.5  1  zf_CCCH_4    Zinc finger domain
       0.73    9.7   9.3        1.4    8.8   9.3    1.4  1  zf-CCCH_4    CCCH-type zinc finger
        1.2    9.1   7.5        2.3    8.2   7.5    1.4  1  zf-CCCH      Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Domain annotation for each model (and alignments):
>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   2.8   2.4e-44   7.2e-41       2     109 .]      19     127 ..      18     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 2.4e-44
                 XXX----S-SS--------SSS-----TTSS----S-THHHHS-----S----HHHH----HHHHSTT--B-HHHHHT--SSGGG-SSB-S---SS-.- CS
       Torus   2 kkrparkqvdeeelksekeeqegeeyNiWynkwsgeekekkkkskekaktrcnikkdsGytkadkekesyfClfFarGlCakGkkCeylHrlPteed.l 99 
                 k +parkqv++ e+++++++q+g+eyNiWynkw+g+++e+++++k+k++trcnik+d+G t+a+++ ++y+ClfFarG+C++G +CeylH lP+ e  l
  CDO69727.1  19 KLKPARKQVKPGEVEKKEAPQTGKEYNIWYNKWAGGDREDSYSNKTKSQTRCNIKRDAGLTRANTTGNKYCCLFFARGCCPYGWECEYLHMLPDPETaL 117
                 569*********************************************************************************************977 PP

                 --TTB-TTS- CS
       Torus 100 kekkvDiFGR 109
                  ++++D+F+R
  CDO69727.1 118 PDTSKDCFAR 127
                 7999****98 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.9e-08   8.6e-05       8      51 ..     159     208 ..     155     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.9e-08
  Nup35_RRM_2   8 GydtelielVlehFasfGeIvk..hyvp......kevsvmyvkfesekdaek 51 
                  G  +e++e V++hF++ GeI k  h         + +sv++v+++se  a+ 
   CDO69727.1 159 GTGPETEEVVRRHFKEWGEIEKtsH--HrpvrvlQYRSVAFVTYKSELHAQF 208
                  66689999**************554..44599*999***********99975 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.4e-08   0.00022      11      69 ..     164     223 ..     150     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.4e-08
                 SHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  11 teeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 tee ++++F+++G+i++ +  r  +  + + +afV+++s+  A+ A+ea+  + l++ e+
  CDO69727.1 164 TEEVVRRHFKEWGEIEKTSHHRPvRVLQYRSVAFVTYKSELHAQFAKEAMACQSLDNDEI 223
                 899************9999999999*************************9999888776 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.3   4.7e-05      0.14       1      19 []      90     108 ..      90     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C ff++G C++G  C ++H
  CDO69727.1  90 CLFFARGCCPYGWECEYLH 108
                 99***************** PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   9.3   0.00046       1.4       3      21 ..      90     108 ..      89     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00046
   zf-CCCH_4   3 CpyfakGsCrfGdnCrFsH 21 
                 C +fa+G+C +G  C ++H
  CDO69727.1  90 CLFFARGCCPYGWECEYLH 108
                 779**************** PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.5   0.00076       2.3       6      26 ..      89     109 ..      87     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00076
                 BCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   6 CrffmrtGyCkyGdrCkFaHg 26 
                 C+ f+ +G C+yG  C + H 
  CDO69727.1  89 CCLFFARGCCPYGWECEYLHM 109
                 6666666*************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2436.57
//
Query:       CDO69728.1  [L=556]
Description: hypothetical protein BN946_scf184687.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3882.35
//
Query:       CDO69729.1  [L=530]
Description: hypothetical protein BN946_scf184697.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-72  243.5   0.0    3.1e-72  243.1   0.0    1.1  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.1   0.0   1.8e-76   3.1e-72       1     241 [.      51     288 ..      51     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.1 bits;  conditional E-value: 1.8e-76
       RVT_2   1 ktyrlvslPkdrkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 k+++lv+ Pk+rk i +rWvf +k+    +++ karlva+Gfsq+ g+dyd++f+Pv+r+++vrL+lal+a e++ +  ldv  a+L ++l+ee+y+ q
  CDO69729.1  51 KVFKLVDRPKGRKVIKNRWVFDIKS----DGRKKARLVAKGFSQVEGIDYDQIFSPVVRFETVRLILALSALENWYITGLDVRNAYLYGKLEEEIYMEQ 145
                 69**********************5....9********************************************************************* PP

       RVT_2 100 PpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegk.livalyvddlliagsdikiledvkkelakkfklkdlg 197
                 P Gf+  ++e+kv +L +slyGlkqa+l+W +++++ +k+lgf+r  +  Gl++  + +g  +iv +yvdd l  g++  ++e++k ++ +k++ +dlg
  CDO69729.1 146 PEGFTAKGQEHKVLRLLRSLYGLKQAGLAWWRTLNESMKELGFKRLVSDAGLFIFRDKNGLlVIVVVYVDDALFCGPNKALVEKMKAKFMEKWECRDLG 244
                 *****************************************************9998998868899********************************* PP

       RVT_2 198 kvskfLGieiaqeaggiklsladyiakvvkkfeltdaktvatPl 241
                 + ++fL + i+++ ++i + + +y++kv++  ++++ak+  tPl
  CDO69729.1 245 EPKEFLRMRIQRSGSTICIDQCAYLEKVLQRCGMQNAKPAPTPL 288
                 ****************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3713.68
//
Query:       CDO69730.1  [L=347]
Description: hypothetical protein BN946_scf184697.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2454.06
//
Query:       CDO69731.1  [L=322]
Description: hypothetical protein BN946_scf184697.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   82.9   0.0    1.2e-15   57.4   0.0    2.2  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
       0.17   12.4   0.0          1    9.9   0.0    2.2  2  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.3e-09   3.9e-05      27     101 ..      61     141 ..      54     143 .. 0.90
   2 !   57.4   0.0   1.3e-19   1.2e-15       2     101 ..     189     287 ..     188     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 4.3e-09
                  -TTSHHHHCHHHHHHHHHHHCTT....TSEEEEEETTTSHHH..HHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin  27 ApwCghCkalaPeleklaeelkd....kvklakvdvdenedl..akkyevegiPtlklfkngkevkkyegarekeklaafl 101
                  + +C +C +la  +++l ee+       v  a+v + e e l  ++k  v   P++ l++ng+ v+ y g r  ++l ++l
   CDO69731.1  61 SRYCSPCGNLATLWNRLVEEVDTtplpGVGPAQVHCFEDEALagCRKGTVAWDPQMSLYRNGELVDVYAGPRAVQSLLEYL 141
                  689*******************999999999****98777662268999***********************999998876 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 1.3e-19
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekla 98 
                  vl l +e+F+e+v +    vlv+F Apw    ++laP++++laee+++  v++a+vd+de++ l+ + +v+g+P +  + ++ +   y g+r  ++l+
   CDO69731.1 189 VLALDDETFQEHVDA--GGVLVKFSAPWSYESRKLAPTWAQLAEEMQGkAVTIAEVDCDEHSALCLREGVTGVPVIFYYGADGAKTWYPGGRGLAALR 284
                  567899*******99..*******************************99**************************8888888999999999999998 PP

                  HHH CS
  Thioredoxin  99 afl 101
                  af 
   CDO69731.1 285 AFA 287
                  876 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.32   2.8e+03      10      21 ..      54      65 ..      23      85 .. 0.75
   2 ?    9.9   0.0   0.00011         1      63      98 ..     232     276 ..     201     285 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.32
  Thioredoxin_2 10 vvftdpdCpyCk 21
                   v+f+ +++ yC 
     CDO69731.1 54 VWFHPSTSRYCS 65
                   566666666665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00011
  Thioredoxin_2  63 fkd.........ieenvelarkygvrgtPtivfldgkeivarlpG 98 
                    +++          +e+++l  + gv+g+P i+++ ++   +++pG
     CDO69731.1 232 MQGkavtiaevdCDEHSALCLREGVTGVPVIFYYGADGAKTWYPG 276
                    222333344444567899****************99966668887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2312.94
//
Query:       CDO69732.1  [L=486]
Description: hypothetical protein BN946_scf184697.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-92  308.1   0.0    5.7e-92  307.7   0.0    1.1  1  DUF455    Protein of unknown function (DUF455)
    4.1e-06   26.6   0.0    7.9e-06   25.7   0.0    1.5  1  Rieske    Rieske [2Fe-2S] domain
     0.0037   17.2   0.0     0.0098   15.8   0.0    1.8  1  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> DUF455  Protein of unknown function (DUF455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.7   0.0   9.6e-96   5.7e-92       1     247 []     210     462 ..     210     462 .. 0.93

  Alignments for each domain:
  == domain 1  score: 307.7 bits;  conditional E-value: 9.6e-96
      DUF455   1 ntadpeeKveltrelaaawragklksiae....akapadrparpekpel..vepkkvpkrrklgteesraallHalahiElnAidlaldaiarf....e 89 
                 ntadp  Kv++tr++++ +r+g+lksi++    a+ p+d+p+r++++    v+       +k+   ++ra++lHala+iE++Aidla+d+iar+    +
  CDO69732.1 210 NTADPLLKVQRTRHAVHLFRTGQLKSIGHrspnAPRPPDVPPREDTYARnvVD------PGKMARRKNRAVMLHALANIEQWAIDLAWDIIARYgpshP 302
                 689************************99643324555677777766542244......566666789******************************* PP

      DUF455  90 elpreffkDwlkvaedEakHfsllaerLeel..gseYGdlpahdgLwesaektakdllarlavvplvlEArGLDvtpalieklraagdeesaeiLevIl 186
                 +lp +ff+D++k+a dE+kHfsll++rL++l   + YG+lp+h+gLwesa+ t  +l+arla+++lv+EArGLDv+p +iek+r+agd +s+++Le+I+
  CDO69732.1 303 DLPPAFFADFTKMALDESKHFSLLTARLAALspSTPYGSLPVHAGLWESARVTFPSLRARLAIIHLVHEARGLDVNPGTIEKFRRAGDPDSVRVLETIH 401
                 *******************************77899*************************************************************** PP

      DUF455 187 edEitHVaaGvrWfrylcekegldpvetFrelvreyfrgklkgpfneeaRkkAGlteeele 247
                 +dE+tHV++G+rWf+++c+k+g+dpv+tFre+vr+ +rg++kgpfn+e+R+kAGlt++++e
  CDO69732.1 402 HDEVTHVTTGHRWFTWVCAKQGVDPVQTFREEVRRGWRGDVKGPFNAEDREKAGLTPDFYE 462
                 ***********************************************************96 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.3e-09   7.9e-06      33      76 ..      73     120 ..      18     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.3e-09
                 TS-EEEEESC-TTTT-BCGGSEEE...TT.EEE-TTT--EEE.TTSBE CS
      Rieske  33 dgevyAlsdvCtHrgaplsegkid...ekgvleCpcHgwayd.adGkv 76 
                 ++++y+++  C+H+ga +s+ +i+   ++ v +Cp+H+  +d ++G+ 
  CDO69732.1  73 RDQIYVMEANCPHLGADMSHAEIEecdTGVVAVCPWHRYDFDlKTGHS 120
                 789***************887774444777899*********999975 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06    0.0098      25      81 ..      66     120 ..      49     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
                 EEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BB CS
    Rieske_2  25 qvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGec 81 
                  v   rl ++++y +++ +p    + +s++ +++ +  +v ++P +   fdLktG+ 
  CDO69732.1  66 FVSSQRL-RDQIYVMEANCPHL-GADMSHAEIEECDTGVVAVCPWHRYDFDLKTGHS 120
                 5555555.89***********6.6679********999*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3301.41
//
Query:       CDO69733.1  [L=471]
Description: hypothetical protein BN946_scf184697.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.5e-116  387.8   7.8   7.4e-116  387.6   7.8    1.0  1  ATG22     Vacuole effluxer Atg22 like
    6.9e-08   31.8  40.2    9.4e-05   21.5  23.6    3.4  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.6   7.8  8.2e-120  7.4e-116      91     477 ..       1     459 [.       1     460 [. 0.96

  Alignments for each domain:
  == domain 1  score: 387.6 bits;  conditional E-value: 8.2e-120
       ATG22  91 lsglADygnyrknlLlafaligslstilfllv..tpkkYllgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeee............... 172
                 ++g+AD+  +rk+lLlafa +gs+s+ilfllv  t++ + l a l+i +n+ fgas+v ln+++P l++  +e+ +a+ +  +                
  CDO69733.1   1 MGGIADHPPHRKKLLLAFAALGSVSAILFLLVpsTSRAWPLVAPLAICANVGFGASIVALNAYIPTLAQGAQEVVAARANLVRLlrsngsgivaeprrs 99 
                 89******************************989999***********************************96666555555999************ PP

       ATG22 173 ........................eessetaeeeeskelklstriSslGlaigylgailvqiisilivialgstatfslrlalllvGlwWliftipaal 247
                                         e++++ ++e+++  + +++riSs G+a+gy ++i+++++ ++ v a++ + t slrla+ l+G+wW++ftipaa 
  CDO69733.1 100 edthgesfdvhepllsqfseetmpEDARKWKAEHDQVLSTTTSRISSQGIALGYASGIVMLLLALIPVQAMKGS-TNSLRLAIGLSGVWWALFTIPAAA 197
                 **********************966666666677777777*********************************9.************************ PP

       ATG22 248 llkkrp.gpplp......................kglsyliygwkslgrtl..kqarklkdvllfLvawfllsdgiatvsstavlfaktelkmstakli 321
                 +l+  +  +++p                      ++++ ++ +wk+lg++l  +++++l++++++L+awfllsdg++t++sta lf+kt+l+m +++li
  CDO69733.1 198 WLPGGSsVSQTPivlgganeeiegvssvaeqrswSMKREIVRAWKRLGQMLrwREIKRLRNTFVYLAAWFLLSDGFTTITSTALLFGKTTLHMPPSSLI 296
                 ***9996566669*******************99999************98779********************************************* PP

       ATG22 322 llsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGii.......lgkiGlkqpwEfyvlavvyglvlgglssysRslfseLiPrG 413
                 l++ ++ +a+++G+++wp+v+rr + +  ++l+++++++++ip+yG+lG++       +++ Gl +p+E+yvlav++g+v g+++ y+R++++e iP+G
  CDO69733.1 297 LIGALTPTAGIIGSLIWPMVQRRAGWSNLRVLVILVAMASAIPAYGCLGFLpvfqmgsVKFGGLTTPAEMYVLAVYFGSVYGAFQGYARAFYAEFIPPG 395
                 *********************************************************99999************************************* PP

       ATG22 414 kEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdvergrrea 477
                 +Ea++++L++itdk+ss++gplivglI D tgnir+af+fl++++ +++p+++ v+vergr++a
  CDO69733.1 396 EEARWYALFSITDKSSSFVGPLIVGLIADTTGNIRYAFFFLVFMIWAAVPIVMSVNVERGREDA 459
                 **************************************************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.2   8.8e-08   0.00079     265     344 ..       2      82 ..       1      86 [. 0.78
   2 !   21.5  23.6   1.1e-08   9.4e-05     149     353 .]     176     416 ..     135     416 .. 0.71
   3 !   11.2   8.8   1.4e-05      0.12      84     164 ..     361     443 ..     342     463 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.8e-08
       MFS_1 265 grlsdrlgrrrrlllallllllaalglallavtssavllll.vlvl.iGfglgfvfpsllalasdlappeeagtasglfnta 344
                 g ++d+ ++r+ llla+++l  ++++l+ll +++s ++ l+ +l++ + +g+g   ++l+a++  la   ++  +++ +n++
  CDO69733.1   2 GGIADHPPHRKKLLLAFAALGSVSAILFLLVPSTSRAWPLVaPLAIcANVGFGASIVALNAYIPTLAQ-GAQEVVAARANLV 82 
                 778999899999999999988888888888888899999998555525559999999*****999994.6666666666655 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.1e-08
       MFS_1 149 gWravfyilaivsllafvlfllll......peepperkrkspkeee....................kgtgpaplvp.....awkallkdpvlwillial 216
                 + r++  + ++  +l+ + ++++l             +++     +                    k+   ++++       w+++++ +  +++l+a+
  CDO69733.1 176 SLRLAIGLSGVWWALFTIPAAAWLpggssvS------QTPIVL--GganeeiegvssvaeqrswsmKREIVRAWKRlgqmlRWREIKRLRNTFVYLAAW 266
                 4555555555555555554334442222221......222222..122444444554444456666444444444466666699999999887899999 PP

       MFS_1 217 llfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr....rrrlllallllllaalglallavt..........ssav 301
                 +l + gf++++++  l+ +++l+++   ++ l+ al+  +g+i++l++  + +r g+       +l+a+++++ a+ +l +l+v+          ++++
  CDO69733.1 267 FLLSDGFTTITSTALLFGKTTLHMP-PSSLILIGALTPTAGIIGSLIWPMVQRRAGWsnlrVLVILVAMASAIPAYGCLGFLPVFqmgsvkfgglTTPA 364
                 9999999999999999*********.677777789999999999**********887656677777788888888888888888899999999998899 PP

       MFS_1 302 llllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  ++++ v +G  +g +++ + a+ ++++pp e ++ ++lf+++   ++++gp
  CDO69733.1 365 EMYVLAVYFGSVYGAFQGYARAFYAEFIPPGEEARWYALFSITDKSSSFVGP 416
                 99889999***********************************999999998 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 1.4e-05
       MFS_1  84 slw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivslla 164
                 + +  ++vl v  G  +ga+   + a+ a+  p+ e +r ++l+s++   ++ +gpl+ gl+a+  g  r++f++l ++   a
  CDO69733.1 361 TTPaEMYVLAVYFGSVYGAFQGYARAFYAEFIPPGEEARWYALFSITDKSSSFVGPLIVGLIADTTGnIRYAFFFLVFMIWAA 443
                 3455799********************************************************55555777766655544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3389.36
//
Query:       CDO69734.1  [L=366]
Description: hypothetical protein BN946_scf184697.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2810.97
//
Query:       CDO69735.1  [L=571]
Description: hypothetical protein BN946_scf184697.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4326.71
//
Query:       CDO69736.1  [L=483]
Description: hypothetical protein BN946_scf184697.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-65  219.8   0.0    3.9e-64  216.6   0.0    2.0  1  Pkinase         Protein kinase domain
    3.4e-37  128.2   0.0    1.1e-36  126.4   0.0    1.7  1  Pkinase_Tyr     Protein tyrosine kinase
    3.8e-06   26.4   0.4    6.1e-06   25.7   0.4    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    1.1e-05   24.9   0.1    2.9e-05   23.6   0.0    1.7  2  Kinase-like     Kinase-like
      8e-05   22.7   0.3      0.013   15.5   0.2    2.3  2  APH             Phosphotransferase enzyme family
    9.1e-05   21.6   0.0    0.00011   21.3   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.018   14.7   0.4      0.029   14.0   0.4    1.2  1  WaaY            Lipopolysaccharide core biosynthesis protein 
       0.15   11.6   0.0       0.33   10.4   0.0    1.5  1  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
       0.16   11.5   0.1       0.26   10.8   0.1    1.3  1  Choline_kinase  Choline/ethanolamine kinase
       0.17   11.5   0.1        0.3   10.7   0.1    1.4  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   0.0   2.2e-67   3.9e-64       1     264 []     130     399 ..     130     399 .. 0.89

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 2.2e-67
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--T CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..................kkvlrEikilkklkhpnivrlyevfeekdelylvleyve 81 
                 y+  ++lG Gs+GkV  a+++ tg++ AvK++ + + + + +                   ++lrE ++   l+hp+i+ + e++ +++++y+v+eyv+
  CDO69736.1 130 YTLSKTLGAGSMGKVKLAHHNITGEKLAVKILPRANPSGSANvptseaaakqaskdaskeIRTLREAALSMLLHHPYICGMREMIVHQHHYYMVFEYVS 228
                 67889***************************998887777777788888889955555555566666666677************************* PP

                 TEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHH CS
     Pkinase  82 ggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvD 179
                 gg++ d++  +g l e+ a+k+a+qi ++l+y+H+++++HrDlK eNiLi+++g++Ki+DFGl++ ++   +l++f+g+ ++ APE+l+++ y +++vD
  CDO69736.1 229 GGQMLDYIISHGRLRERVARKFARQIGSALDYCHKNNVVHRDLKIENILISHSGNIKIIDFGLSNLYNPADHLSTFCGSLYFAAPELLNAKVYtGPEVD 327
                 ***9999999******************************************************************************9999999**** PP

                 HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 180 vWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 vWs Gv+ly l++gk pf +++     ++++++              ++ +  +s e+k+ll+++l  +p  R   +e+l+hp++
  CDO69736.1 328 VWSFGVVLYVLVCGKVPFDDQSMPA-LHAKIKR------------GLVEYPVWLSAECKHLLTRMLVTNPAARAPLSEVLSHPWM 399
                 *******************443333.2333332............234555668******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   6.3e-40   1.1e-36       3     256 ..     132     394 ..     130     396 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 6.3e-40
                  EEEEEEEESSEEEEEEEEET.................TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE-- CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.................ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyv 83 
                  l+k+lG+G+ GkV  ++ +                  + +  + + a K+ +++a++e   + l+ea++ + l+hp i  +  ++++++++++v+eyv
   CDO69736.1 132 LSKTLGAGSMGKVKLAHHNItgeklavkilpranpsgSANVPTSEAAAKQASKDASKE--IRTLREAALSMLLHHPYICGMREMIVHQHHYYMVFEYV 227
                  7899************999778888899998877766666667777888776666555..7778888888889************************* PP

                  TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE CS
  Pkinase_Tyr  84 kgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk 181
                  +gG++l+++ ++   +l+ +   +fa q+ ++++y +++++vHrdl   N+L+s++  +ki DfGL++  +  d+    ++   ++ + apE l++k+
   CDO69736.1 228 SGGQMLDYIISH--GRLRERVARKFARQIGSALDYCHKNNVVHRDLKIENILISHSGNIKIIDFGLSNLYNPADHL---STFCGSLYFAAPELLNAKV 320
                  ***********9..99****************************************************99444444...3445678999********* PP

                  EEH.HHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 182 fts.ksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  +t  + DvWsfGv+l+ +++ g+ p+ + +   + +k+k+g  +e p   ++e ++l+++ + ++p+ R+ +se++
   CDO69736.1 321 YTGpEVDVWSFGVVLYVLVC-GKVPFDDQSMPALHAKIKRGL-VEYPVWLSAECKHLLTRMLVTNPAARAPLSEVL 394
                  995489**********9998.************999999885.799999*********************999986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.4   3.4e-09   6.1e-06      89     169 ..     216     292 ..     180     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.4e-09
         Kdo  89 e.yrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                    +  ++ e + g q L+ ++  + +l e++ r+  +++g +    h+ +v H+dl + nil+   +    +i +iD+  +
  CDO69736.1 216 HqHHYYMVFEYVSGGQMLDYIIS-HGRLRERVARKFARQIGSALDYCHKNNVVHRDLKIENILISHSG----NIKIIDFGLS 292
                 33667789999999999999988.688****************************************9....9999**9655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.1       4.9   8.7e+03      49      66 ..     183     200 ..     180     202 .. 0.82
   2 !   23.6   0.0   1.6e-08   2.9e-05     159     260 ..     260     356 ..     236     387 .. 0.74

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4.9
  Kinase-like  49 seaskkdlerlkeqelai 66 
                  s+ ++k++  l+e++l +
   CDO69736.1 183 SKDASKEIRTLREAALSM 200
                  688999999999999865 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.6e-08
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlat 254
                  + +++ +vh +++ +n+l  + g +++ +f+    +     ls+ +    fa pEll+++             ++d+W  G+v y + c k+P++ + 
   CDO69736.1 260 YCHKNNVVHRDLKIENILISHSGNIKIIDFGLSNLYNPADHLSTFCgsLYFAAPELLNAKV--------YTGPEVDVWSFGVVLYVLVCGKVPFDDQS 349
                  568899**********************99755555555556677755789*******943........35579********************9764 PP

  Kinase-like 255 .eeakee 260
                   +  + +
   CDO69736.1 350 mPALHAK 356
                  1444444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1     0.003       5.5      33     103 ..     182     255 ..     150     265 .. 0.73
   2 !   15.5   0.2     7e-06     0.013     149     202 ..     243     298 ..     241     320 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.003
                 -HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS..HHHHHHHHHHHHHHHHHHC CS
         APH  33 aaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr..klsaaqlpellealgefla 103
                 a  ++++e + lr  a + + + P ++ +++   ++ +++ ++eyv g ++l+    + + ++++++++++ ++
  CDO69736.1 182 ASKDASKEIRTLREAALSMLlHHPYICGMREMIVHQHHYYMVFEYVSGGQMLDyiISHGRLRERVARKFARQIG 255
                 556666777777665533335777778887777777888****************5556666666666666544 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7e-06
                 HHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEECC CS
         APH 149 eeqvlaalaallpg....elptvllHgDlhpgNllvd.pddgrvtGviDfedaglgppl 202
                 +e+v++++a+   +      +  ++H+Dl+  N+l+  +++ +   +iDf+++ l +p+
  CDO69736.1 243 RERVARKFARQIGSaldyCHKNNVVHRDLKIENILIShSGNIK---IIDFGLSNLYNPA 298
                 5556666666666655555566689************444444...9****99888776 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   6.3e-08   0.00011     228     260 ..     266     298 ..     148     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.3e-08
  Haspin_kinase 228 FEHRdLhldniLvdknlnvtlidlklsRlesse 260
                      HRdL+++niL+ +++n+ +id+ ls l ++ 
     CDO69736.1 266 VVHRDLKIENILISHSGNIKIIDFGLSNLYNPA 298
                    56************************9987544 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   1.6e-05     0.029      91     178 ..     192     289 ..     184     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
        WaaY  91 rvrseglaal.ndfyllaerkilryvkvyimiieyiegielvdmpeiddevkak........ikqsieklhqlgmvsgdphrgnfivkk.devriidl 178
                  +r++ l++l    y+   r ++ + + y m+ ey+ g ++ d  + +  ++++        i ++++  h+ ++v  d +  n+++++ ++++iid+
  CDO69736.1 192 TLREAALSMLlHHPYICGMREMIVHQHHYYMVFEYVSGGQMLDYIISHGRLRERvarkfarqIGSALDYCHKNNVVHRDLKIENILISHsGNIKIIDF 289
                 5677777765156699999999*******************99876555554431111111155678889**************98875268****96 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.33     118     156 ..     244     282 ..     230     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
  YrbL-PhoP_reg 118 eeltaelkeaLdefleelldnhivtndlsakNivvkkns 156
                    e+++ + ++++   l+++  n++v +dl+++Ni++ +  
     CDO69736.1 244 ERVARKFARQIGSALDYCHKNNVVHRDLKIENILISHSG 282
                    55667889999999********************98765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015      0.26     146     175 ..     265     293 ..     180     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                     EEE-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 146 vfcHnDlqegNillnkeekklvlIDFEYag 175
                     +  H Dl  +Nil  ++ +++ +IDF  ++
      CDO69736.1 265 NVVHRDLKIENILI-SHSGNIKIIDFGLSN 293
                     33478*********.99*********7775 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00017       0.3      83     150 ..     222     290 ..     172     297 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                 EEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  83 lvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 +v e+++  ++  + +++ + +e  ++ ++  + +     +++++vH DL   N+l+++  ++ iID++
  CDO69736.1 222 MVFEYVSGGQMLDYIISHGRLRERVARKFARQIGSALDYCHKNNVVHRDLKIENILISHSgNIKIIDFG 290
                 6778888555555555555544444444444455566667799*************98877******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3232.33
//
Query:       CDO69737.1  [L=317]
Description: hypothetical protein BN946_scf184697.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2170.31
//
Query:       CDO69738.1  [L=832]
Description: hypothetical protein BN946_scf184697.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-13   48.3   0.5    1.5e-12   47.1   0.5    1.6  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.5   8.2e-17   1.5e-12       2     180 ..     271     430 ..     270     476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 8.2e-17
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   +++f+ ++ ++ il+    +p t       + +  p+l+++i+a+ +++ ++ + +          ++ a + +a++l+        +s++ +q++l
    CDO69738.1 271 KIYFERINVHCDILDPTLHTPAT-------TFNRCPFLFTVICAISSRYYQEKSDIY----PIA--MHFAKHAAASALL-----NGWKSVELSQAYL 349
                   689***99999999988888888.......778889***************999995....222..4455556777777.....99*********** PP

  Fungal_trans  99 llelyektssd..ralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaes..rrRlwwaaFylDktialklGrppllddsq 180
                   l++ly     +   +  +++ g+a+r+a++l Lh  ++ + k       + e+e+    R+w+ ++ lD+ +a+++G p +++++ 
    CDO69738.1 350 LMSLYGVPARRweEDRNWLYTGLAIRIATDLNLHVVSNVKPK-----TEKQEREMvnQTRVWLLCYNLDRSTATQFGKPATIKEDY 430
                   **********722556667***************88877662.....333334445568*********************777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 5331.55
//
Query:       CDO69739.1  [L=93]
Description: hypothetical protein BN946_scf184697.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   40.5   0.0    2.6e-10   40.0   0.0    1.3  1  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
    3.9e-08   32.9   0.0    5.1e-08   32.6   0.0    1.2  1  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
       0.07   13.4   0.0      0.092   13.0   0.0    1.2  1  TUG-UBL1   TUG ubiquitin-like domain


Domain annotation for each model (and alignments):
>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.4e-14   2.6e-10       7      70 ..      21      83 ..      16      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.4e-14
                ESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD  7 gkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidv 70
                + +g++ +ikVkp ++++kL ea +k+ +     +++++F G++L+p+++++d  +edgd+id+
  CDO69739.1 21 DFEGQTCTIKVKPGMPFKKLFEAAEKRFQKEL-GTFKFTFGGQRLRPEECPADHNMEDGDVIDA 83
                557999*****************888888877.******************************7 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   8.5e-12   5.1e-08       6      71 ..      22      87 ..      15      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.5e-12
                TTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  6 ldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                + g+++t++v++    ++l e+ +++++ +   +++ + G++L+ e+++++++++dg+++  +l +
  CDO69739.1 22 FEGQTCTIKVKPGMPFKKLFEAAEKRFQKELGTFKFTFGGQRLRPEECPADHNMEDGDVIDAHLQQ 87
                789**********************************************************99976 PP

>> TUG-UBL1  TUG ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05     0.092       1      31 [.      20      50 ..      20      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
    TUG-UBL1  1 itynfrrfkvkvtpnttlndvLeeackkfkl 31
                ++  +++ ++kv+p+++ +++ e a k+f+ 
  CDO69739.1 20 VDFEGQTCTIKVKPGMPFKKLFEAAEKRFQK 50
                677899********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 655.57
//
Query:       CDO69740.1  [L=414]
Description: Carbohydrate-Binding Module Family 13 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-08   35.3   0.0    1.9e-05   25.3   0.0    2.7  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
     0.0031   17.8   0.0        3.4    7.9   0.0    2.3  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.1e-09   1.9e-05      12      70 ..     199     253 ..     192     276 .. 0.82
   2 !    6.9   0.0    0.0012        10      49      88 ..     279     318 ..     255     319 .. 0.82
   3 !    6.5   0.0    0.0016        14      52      88 ..     282     318 ..     280     342 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.1e-09
                      TTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTT CS
  RicinB_lectin_2  12 dgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasg 70 
                       g+y++ n++sg+++d +g  ++   ++  ++ +g++nqqW + + g   y i++++ +
       CDO69740.1 199 PGTYVLLNARSGTAVDMSGVDNK---TLIGYPMHGGPNQQWEFIPSG-HGYVIRCVRRS 253
                      489****************9888...6999999**********9999.67899987655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0012
                      GCEEEEECCESSEEEEEETTTTEEEEECGCS-.STTEEEEE CS
  RicinB_lectin_2  49 nqqWrledtgdgtyrivnkasgkvLdvaggst.anGtnvqq 88 
                         W +e+t  +  ri   +++ v d+a+ ++ ++Gt++q+
       CDO69740.1 279 PVSWNVEQTE-DGIRISWPNTDFVFDLAERGSnEPGTKIQL 318
                      5679998888.779**************99778******97 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0016
                      EEEECCESSEEEEEETTTTEEEEECGCS-.STTEEEEE CS
  RicinB_lectin_2  52 WrledtgdgtyrivnkasgkvLdvaggst.anGtnvqq 88 
                      W +e+t  +  ri   +++ v d+a+ ++ ++Gt++q+
       CDO69740.1 282 WNVEQTE-DGIRISWPNTDFVFDLAERGSnEPGTKIQL 318
                      6655555.456666666666666666555566666664 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00054       4.8      53      90 ..     208     243 ..     188     266 .. 0.72
   2 !    7.9   0.0   0.00038       3.4      40      87 ..     282     334 ..     280     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
                     .TTEEEEESSSSTTSBEEEEETTTTSGGGCEEEETTTT CS
  Ricin_B_lectin  53 qselCldvsstaegakvvlakChkgkgnqrWefdkdgt 90 
                     +s+  +d+ s  ++++++ ++ h g++nq+Wef ++g+
      CDO69740.1 208 RSGTAVDM-SGVDNKTLIGYPMH-GGPNQQWEFIPSGH 243
                     34555555.56666667777777.77777777776666 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00038
                     EEEE.TTSEEEETT..TTEEEEES...SSSTTSBEEEEETTTTSGGGCEEEET CS
  Ricin_B_lectin  40 wtlt.kdgeirska.qselCldvs...staegakvvlakChkgkgnqrWefdk 87 
                     w+++ ++  ir++  ++++ +d+    s+++g+k++l++ + g++ q+W++++
      CDO69740.1 282 WNVEqTEDGIRISWpNTDFVFDLAergSNEPGTKIQLMRLKPGEPCQLWHYTR 334
                     55554445566654677888888888899*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3092.37
//
Query:       CDO69741.1  [L=142]
Description: Carbohydrate-Binding Module Family 13 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-21   75.0   1.3      1e-12   48.6   0.1    2.9  3  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    9.7e-08   32.3   0.0      0.026   14.8   0.0    1.9  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.1   1.1e-16     1e-12      11      86 ..       5      76 ..       2      79 .. 0.89
   2 !   18.2   0.0   3.4e-07     0.003      47      89 .]      80     125 ..      74     125 .. 0.90
   3 !   17.9   0.1   4.3e-07    0.0039       5      56 ..      85     140 ..      85     142 .] 0.67

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.1e-16
                     TTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEE CS
  RicinB_lectin_2 11 gdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnv 86
                     g+ +y+i+n++ g+vLd +gg+      +  ++++++anq+W le+ g + yr++n+asg++++v+ g  +n +++
       CDO69741.1  5 GNKVYKITNAKGGTVLDLSGGQDG--SPITGYAWHSGANQRWLLEQHG-DVYRFKNAASGLFINVD-GEPKNFAPI 76
                     5679*****************976..79****************9999.9***************9.665666655 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3.4e-07
                      -GGCEEEEECCESS..EEEEEETTTTEEEEECGCS-.STTEEEEEE CS
  RicinB_lectin_2  47 aanqqWrledtgdg..tyrivnkasgkvLdvaggst.anGtnvqqw 89 
                      ++   W +++++++  t+r+  k ++ vLd++++++ ++Gt+v +w
       CDO69741.1  80 TKWADWEIKPDSKDpsTFRVYLKGTNFVLDLSDHGNpNPGTPVTLW 125
                      56788***88888888*****************************9 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 4.3e-07
                      EEEC.ETTTT.EEEEECTSSSEEEECGCC.TBCTTEEEEEE-TT.T-GGCEEEEEC CS
  RicinB_lectin_2   5 Wtlg.sggdg.yytiknvasgkvLdvagg.stanganvqqwtcs.gaanqqWrled 56 
                      W+++ +++d+ ++++  ++++ vLd ++  ++++g+ v  w++  g+ nq+Wr+e+
       CDO69741.1  85 WEIKpDSKDPsTFRVYLKGTNFVLDLSDHgNPNPGTPVTLWESWeGGSNQTWRFEE 140
                      77743455542688888888888877665245588888888866688888888765 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.9e-06     0.026       5      87 ..      55     140 ..      51     142 .] 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
                     EEETTTGEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEETT....SEEEETT..TTEEEEES...SSSTTSBEEEEETTTTSGGGCEEEET CS
  Ricin_B_lectin   5 irnvasgkCLdvegeskagapvglydChgskgkQlwtltkd....geirska.qselCldvs...staegakvvlakChkgkgnqrWefdk 87 
                      +n+asg+ + v ge k + + ++++ +       w+++ d     ++r+    +++ ld+s   + ++g++v+l++  +g++nq W+f++
      CDO69741.1  55 FKNAASGLFINVDGEPK-NFAPIVASTKW----ADWEIKPDskdpSTFRVYLkGTNFVLDLSdhgNPNPGTPVTLWESWEGGSNQTWRFEE 140
                     56666777777776665.44444444322....3577774444455566554678888888888888899999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1124.40
//
Query:       CDO69742.1  [L=150]
Description: Carbohydrate-Binding Module Family 13 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-11   43.6   0.9    5.3e-06   27.1   0.1    1.9  2  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1     3e-10   5.3e-06      11      78 ..      18      82 ..      12      93 .. 0.80
   2 !   21.7   0.1   1.4e-08   0.00025       1      86 [.      52     133 ..      52     136 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3e-10
                     TTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESS.EEEEEETTTTEEEEECGC CS
  RicinB_lectin_2 11 gdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdg.tyrivnkasgkvLdvagg 78
                     ++ +y+   +++ +vLd +    +    +   ++++++nq+W  e++ +g  ++++n+a+g++L ++ g
       CDO69742.1 18 SGHTYKMSHARTRTVLDLSMKDWQ---SIKSAPWDASDNQKWVAERAESGnGWTLRNVATGLFLGID-G 82
                     344699999*******99888777...57777788*********8888888*************998.4 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.4e-08
                      CCGEEEEC.ETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESS.EEEEEETTTTEEEEECGCS-STTEEE CS
  RicinB_lectin_2   1 anQqWtlg.sggdgyytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrledtgdg.tyrivnkasgkvLdvaggstanGtnv 86 
                      +nQ+W  +  ++++ +t++nva+g++L ++g    n a       ++ ++++W l++  +  +  +v   + + + +a   + +G++v
       CDO69742.1  52 DNQKWVAErAESGNGWTLRNVATGLFLGIDGVPRPN-A----PVIATRQETTWDLQPGREPsSLVLVVTGTRLIVQLA-EIARSGASV 133
                      69*****64566667************998876663.2....333366788888866654456666666666666666.455666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1084.71
//
Query:       CDO69743.1  [L=345]
Description: hypothetical protein BN946_scf184697.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-20   72.0   9.2      2e-09   37.2   0.4    3.3  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
          2    8.7   4.5         34    4.8   0.6    2.8  2  Wzz        Chain length determinant protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.1   6.7e-07     0.006       9      94 ..      80     157 ..      72     160 .. 0.77
   2 !   37.2   0.4   2.2e-13     2e-09       3      93 ..     165     247 ..     163     249 .. 0.91
   3 !   22.1   0.0   1.1e-08    0.0001       4      87 ..     256     334 ..     254     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  l+G++a ++++l  +Pl   +t +  q + +++     + +++k++y + G +  y+Gl+++l++  +a++   +++  +  ll+
  CDO69743.1  80 GLSGAAAMILQVLTLMPL---RTVMNYQYRYGTT-----TTQAIKTLYADGGWTRYYQGLTAALVQGPVARFGDTAANAGILALLQ 157
                 467777777777777776...5567777777776.....889***********************998888877777777766665 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 2.2e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 l+++ + + ++la+a+  ++ tP+d+vKt lqtq+ks+        + +l++ +k  G+  l+ G++++   +++ +  +f++y++l ++l
  CDO69743.1 165 LPAFIQTVFASLAAAAFRMILTPIDTVKTTLQTQGKSG--------MAILRSRIKRYGIGTLWYGAVATAAATFVGHYPWFATYNVLNDVL 247
                 66777788899999999********************6........5589***********************************998876 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGG.TTHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrgly.rGllpnllrvapasalkfvlye 87 
                 ++l++ ++G +a +v+ +v + l vvKt  q+++++  +      + +   ++  +Gl+gl+ rGl  ++l +  +  +  vl +
  CDO69743.1 256 KLLRQAFIGFCASVVSDTVSNSLRVVKTYRQVNEERIGY------FAAAEAVIAADGLKGLFgRGLKTRILANGLQGLMFSVLWK 334
                 678999*****************************9885......88***************99*******99976666655555 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6    0.0038        34      14      38 ..      33      57 ..      32      63 .. 0.89
   2 ?    4.6   0.2    0.0043        39      21      55 ..     169     203 ..     156     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0038
                XXXXXXXXXXXXXXXXXXXXXXXXX CS
         Wzz 14 krkklIilvtllfallaviyaflat 38
                +++++I   t+l++l av++a++ +
  CDO69743.1 33 RSWWTIGWYTALALLSAVGLALFIK 57
                89*******************6654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0043
                 XXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHH CS
         Wzz  21 lvtllfallaviyaflatpkYtataqilvpekkqv 55 
                 + t+++ l+a+++ +++tp+ t +++++ + k+++
  CDO69743.1 169 IQTVFASLAAAAFRMILTPIDTVKTTLQTQGKSGM 203
                 55788888899999**************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 2275.03
//
Query:       CDO69744.1  [L=330]
Description: hypothetical protein BN946_scf184697.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-32  111.3   0.4      1e-31  109.7   0.0    1.9  2  TFIIS_M   Transcription factor S-II (TFIIS), central domain
    8.1e-17   60.8  10.9    1.4e-16   60.0  10.9    1.4  1  TFIIS_C   Transcription factor S-II (TFIIS)
    4.4e-09   36.2   1.4    9.6e-09   35.1   1.4    1.6  1  Med26     TFIIS helical bundle-like domain


Domain annotation for each model (and alignments):
>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.42   2.5e+03      90     107 ..      62      79 ..      16      82 .. 0.75
   2 !  109.7   0.0   1.7e-35     1e-31       1     111 [.     149     276 ..     149     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
                 TTSS-HHHHHHHHHHHHH CS
     TFIIS_M  90 eElaseelkeerekleke 107
                  +la e  ++++ ++e+e
  CDO69744.1  62 ADLAKEIVRKWKTEVERE 79 
                 567777777777776665 PP

  == domain 2  score: 109.7 bits;  conditional E-value: 1.7e-35
                 -HHHHHHHHHHHHHTT---...-...................--THHHHHHHHHHHHHHHT------HHHHHHHHHHHHHS-TT-HHHHHTSSSS--ST CS
     TFIIS_M   1 dkvRdkcrelLaealeedsseaee..................eedveelaaeiEealfekekkstdkkykqkvrslvfNLkdkkNpeLrrrvlsgeisp 81 
                 dk+Rdkc el+++al  ds   ++                  +e + + a+eiE+ + +  ++ t+ +yk+k+rsl++NLkdk+Np+Lr++v+sg++ +
  CDO69744.1 149 DKTRDKCTELIYDALVFDSGARTSiappssgssgpvlmqsvaSELILSRAKEIERTVLS-DNGGTTPAYKSKIRSLYVNLKDKNNPGLRESVVSGDLAI 246
                 799****************54444777777778888887776779**************.8999*********************************** PP

                 TTTS---TTTSS-HHHHHHHHHHHHHHHHT CS
     TFIIS_M  82 eklvkmspeElaseelkeereklekealee 111
                 +k+++ms++E+asee+k++++k+++e+l++
  CDO69744.1 247 SKFCRMSSQEMASEERKAADAKIAQENLFK 276
                 ***************************986 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0  10.9   2.4e-20   1.4e-16       1      39 []     290     328 ..     290     328 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.4e-20
     TFIIS_C   1 akCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 ++C +C++r++ + q+QtRsaDEpmt+f++Ct C++rW+
  CDO69744.1 290 FQCGRCKQRKCRYRQAQTRSADEPMTTFVTCTVCNNRWK 328
                 69************************************7 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   1.4   1.6e-12   9.6e-09       2      52 ..      26      75 ..      25      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.6e-12
                HHHHS---....H.HHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHH CS
       Med26  2 iLaqLeklpitte.tLkstgIGkvVnalrkhkhetaevktlAksLvekWkka 52
                iL++L+     te +L++++ G +V +lr+  h ++ v++lAk++v+kWk  
  CDO69744.1 26 ILNTLKQQAKITEaILRESKAGLAVGKLRQ--HASKPVADLAKEIVRKWKTE 75
                89999999559999**************66..66****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1263  (0.0704445); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2289.23
//
Query:       CDO69745.1  [L=434]
Description: hypothetical protein BN946_scf184697.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-41  139.5  19.9    4.3e-08   33.7   0.5    7.3  7  WD40         WD domain, G-beta repeat
    0.00017   21.8   1.0        0.4   11.0   0.1    4.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.01   14.5   0.8        8.3    4.9   0.0    3.6  4  Nup160       Nucleoporin Nup120/160
      0.049   12.9   0.0       0.11   11.8   0.0    1.6  1  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.5   9.5e-12   4.3e-08       1      38 []     132     170 ..     132     170 .. 0.94
   2 !   25.7   0.0   3.2e-09   1.4e-05       3      38 .]     176     212 ..     174     212 .. 0.93
   3 !   25.1   0.2   4.8e-09   2.2e-05       2      38 .]     217     254 ..     216     254 .. 0.95
   4 !   25.3   0.1   4.2e-09   1.9e-05       3      38 .]     260     296 ..     258     296 .. 0.90
   5 !   11.0   0.1   0.00014      0.61       2      37 ..     301     338 ..     300     339 .. 0.82
   6 !   18.1   0.2   8.2e-07    0.0037       4      38 .]     346     380 ..     343     380 .. 0.88
   7 !    9.9   0.0   0.00032       1.5      13      37 ..     405     429 ..     396     429 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 9.5e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++r+++GH ++v+s+a+ p ++w+a+G  D+ ++iWd
  CDO69745.1 132 WKLVRVISGHlGWVRSVAVEPGNKWFATGAGDRVIKIWD 170
                 6899*************************66*******9 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 3.2e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +  +ltGH s v++la+s+ +++l+s+++D+ v+ Wd
  CDO69745.1 176 LKLSLTGHiSTVRGLAVSSRHPYLFSCGEDKMVKCWD 212
                 56789*******************************9 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 4.8e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +r++ GH s+v+sl+ +p  + l+++++D + r+Wd
  CDO69745.1 217 KVIRHYHGHlSGVYSLSLHPTLDILVTAGRDASARVWD 254
                 5689*********************************9 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 4.2e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++l GH + v++++ + + + +++Gs+D t+r+Wd
  CDO69745.1 260 QIHVLAGHtGTVSDVKCQESDPQVITGSMDTTIRLWD 296
                 5899****76699999999999999***********9 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00014
                 EEEEEEESS.SSEEEEEEETTSSEEEEEET.TSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsd.DgtvriW 37 
                 +++ tlt H +sv+sla +p    +asGs   ++++ W
  CDO69745.1 301 KTMVTLTHHkKSVRSLAIHPTEYSFASGSAgGNNIKKW 338
                 677899999999**************997436666666 PP

  == domain 6  score: 18.1 bits;  conditional E-value: 8.2e-07
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +  ++GH+  ++ l+++++g ++ sG+d+gt+ +Wd
  CDO69745.1 346 VFNFSGHNAiINTLSVNSEGVLF-SGGDNGTLTFWD 380
                 5679***7757***********7.7**********9 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00032
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v +  f+  g+ l++G+ D+t++++
  CDO69745.1 405 VFCSTFDVTGTRLITGGADKTIKVY 429
                 6666789999999**********97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.027   1.2e+02      40      74 ..     144     178 ..     132     186 .. 0.86
   2 ?    1.8   0.0     0.065   2.9e+02      39      79 ..     185     225 ..     178     235 .. 0.86
   3 !    4.7   0.1    0.0085        38      20      81 ..     209     269 ..     203     278 .. 0.78
   4 !   11.0   0.1     9e-05       0.4       5      87 ..     236     316 ..     232     321 .. 0.75
   5 ?   -0.0   0.0      0.25   1.1e+03      37      76 ..     352     390 ..     338     396 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.027
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                   vrs+a +p +k +a +  d  +++ d  sg++  
   CDO69745.1 144 WVRSVAVEPGNKWFATGAGDRVIKIWDLASGELKL 178
                  6999999***********************99865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.065
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  s+vr+La +     L    +d  v+  d e  kv+++++ +
   CDO69745.1 185 STVRGLAVSSRHPYLFSCGEDKMVKCWDLEANKVIRHYHGH 225
                  689999999999999999*****************998755 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0085
  ANAPC4_WD40  20 lvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   +  l+ ++v     +++ s v sL+ +p   +L+ a  d + r+ d+ ++  +h l  ++ 
   CDO69745.1 209 KCWDLEANKVIRH-YHGHLSGVYSLSLHPTLDILVTAGRDASARVWDMRTKAQIHVLAGHTG 269
                  5555666666666.567778899******************************999877666 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 9e-05
  ANAPC4_WD40   5 ptmDLiAlatedg..ellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  pt D++  a  d   +++  R++ q  +    +++ ++v++++ ++++     +  d+++rl d   gk++ +l+ ++++ v +l
   CDO69745.1 236 PTLDILVTAGRDAsaRVWDMRTKAQIHVL---AGHTGTVSDVKCQESDPQVITGSMDTTIRLWDLAAGKTMVTLTHHKKS-VRSL 316
                  56666655554431144555555554333...48999*************************************999885.7665 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.25
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++  ++ L+ + +g +L  + ++g++ + d ++g+  +++
   CDO69745.1 352 HNAIINTLSVNSEG-VLFSGGDNGTLTFWDYNTGTAFQNM 390
                  55566667666655.78899999*****999999887765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.016        70     228     255 ..     187     221 ..     167     227 .. 0.76
   2 ?    3.8   0.1    0.0041        18     231     255 ..     239     263 ..     226     283 .. 0.82
   3 ?    4.9   0.0    0.0019       8.3     234     285 ..     284     329 ..     270     344 .. 0.83
   4 ?   -2.5   0.0      0.33   1.5e+03     229     255 ..     363     389 ..     345     395 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.016
                 ........TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 i.......gqtylfalsrdgkLrvWnlltgkclat 255
                 +          ylf+   d+ ++ W+l+ +k++++
  CDO69745.1 187 VrglavssRHPYLFSCGEDKMVKCWDLEANKVIRH 221
                 444555557789*****************999876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0041
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                 ++l+++ rd   rvW+ +t+ ++ +
  CDO69745.1 239 DILVTAGRDASARVWDMRTKAQIHV 263
                 7899***************998765 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0019
                 EEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE CS
      Nup160 234 falsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs 285
                  + s d ++r+W+l+ gk++ t +        ++s++ + + p+e+s+ + s
  CDO69745.1 284 ITGSMDTTIRLWDLAAGKTMVTLTHH------KKSVRSLAIHPTEYSFASGS 329
                 56689*************99997666......67777779999999997766 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.33
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                  + +lf+   +g+L  W+++tg+    
  CDO69745.1 363 SEGVLFSGGDNGTLTFWDYNTGTAFQN 389
                 566777777899*********987665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.4e-05      0.11       3     136 ..     229     369 ..     227     394 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllenee.evenekieedis..tvkviddklli 97 
                 +Ys+ + +  ++++  g+d  ++v +++++ ++ ++++ +  v  vk  + d +++ +++D ti l +l  ++ +v  ++ +  +    ++ ++  ++ 
  CDO69745.1 229 VYSLSLHPTLDILVTAGRDASARVWDMRTKAQIHVLAGHTGTVSDVKCQESDpQVITGSMDTTIRLWDLAAGKtMVTLTHHKKSVRslAIHPTEYSFAS 327
                 9*****99999*************************************9999899**************999987888887777752245666777777 PP

   WD40_like  98 GtnkGs.iyvfsk.dlqleevllgqsseIkeiki.ennkiys 136
                 G+  G+ i +++  +  ++  ++g+++ I+ +++ ++++++s
  CDO69745.1 328 GSAGGNnIKKWKCpEGAFVFNFSGHNAIINTLSVnSEGVLFS 369
                 777774355555313355566666666666665413455565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3159.57
//
Query:       CDO69746.1  [L=191]
Description: hypothetical protein BN946_scf184697.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-17   62.9   0.7    4.5e-17   62.6   0.7    1.2  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.7   2.5e-21   4.5e-17      79     217 ..      38     171 ..      16     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 2.5e-21
     DUF3328  79 pspevdaaWddllkleailipreelrrlgkdp.aaelevedkseg.......gyiaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHC 169
                  +++    W  +++ + ++++ +  +r++ d+ +++ + ++   g        ++++++++HqL CL+++r +l  ++     +se +e+     + HC
  CDO69746.1  38 RRADEGSLW--NVDRKEVALEIDSWTRYKLDSaEEWSRLFPGG-GvihlgseRMPYTVSMMHQLRCLDVVRDQL--NRP----KSERSEQP----TRHC 123
                 555556679..9999*****************55555555444.46****************************..333....33344443....56** PP

     DUF3328 170 idiLrqsimChaDvtlitfnwvkgtkgpvpdfntehqCrdfealld..Wa 217
                 +++Lrqs+ C++D++l +++  ++ ++  p     ++C+d++a+ +  W+
  CDO69746.1 124 LNYLRQSLYCRGDLQLDPYQYPHKVNALHPH--AVRRCKDWRAVYEkvWE 171
                 ******************9997755555555..678*******9665565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1504.37
//
Query:       CDO69747.1  [L=327]
Description: hypothetical protein BN946_scf184697.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2525.88
//
Query:       CDO69748.1  [L=204]
Description: hypothetical protein BN946_scf184697.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-10   40.8   3.4    2.8e-10   40.3   3.3    1.3  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   3.3   1.6e-14   2.8e-10     124     213 ..     102     183 ..      31     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.6e-14
     DUF3328 124 yiaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiLrqsimChaDvtlitfnwvkgtkgpvpd..fntehqCrdfeal 213
                  +  ++  Hq HCL+ lr+ l  +       ++ +++ d +H eHC+ ++r++i+C aD+tl++    ++ + +++   + +e++C d ea+
  CDO69748.1 102 RFFVVSLTHQQHCLRGLREVL--DSV----DGKPTGH-DLHHSEHCLSFMREHILCAADTTLEPG---DPFSRNFTAerVTVERECMDVEAW 183
                 55668899*************..444....2333333.589**********************63...333444444457779999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1471.79
//
Query:       CDO69749.1  [L=320]
Description: hypothetical protein BN946_scf184697.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2338.78
//
Query:       CDO69750.1  [L=303]
Description: hypothetical protein BN946_scf184697.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-06   27.0   0.0    7.9e-06   26.3   0.0    1.2  1  But2      Ubiquitin 3 binding protein But2 C-terminal domain


Domain annotation for each model (and alignments):
>> But2  Ubiquitin 3 binding protein But2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.4e-10   7.9e-06      25     131 ..     168     278 ..     160     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.4e-10
        But2  25 tvsstdvstifnFdipasaagktCslvflfptqsql..etssytlsGsgkfkfskla...apatesttynnkPavkeelgk.ttlspGnaytiasfpCp 117
                 +v+++ ++t+ +F   +    + C+lvf++p  s    + +s +++ s +f++++l+   +   ++ +y+++P+v e++++ ++ +   +  i  fpCp
  CDO69750.1 168 HVTPD-IRTVAQFRAIDFG-MEDCHLVFTLPPLSVPleKGASIEFNPSSRFDVYRLDserPLDVQKLSYKTRPKVVEKVASgVNPRVDGETLIHRFPCP 264
                 57777.9999999766553.589*********99734688999**************9866788999**************99999999********** PP

        But2 118 agqavsyevssagd 131
                   + + +ev+ a++
  CDO69750.1 265 RASLHVFEVACADG 278
                 99999999987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2142.67
//
Query:       CDO69751.1  [L=205]
Description: hypothetical protein BN946_scf184697.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-10   41.1   0.0    3.3e-10   40.2   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.8e-10   40.8   0.0      4e-10   39.7   0.0    1.5  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.7e-09   37.3   0.0    9.5e-09   35.6   0.0    1.8  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.3e-05   24.4   0.0    3.7e-05   23.8   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00046   20.1   0.0     0.0009   19.2   0.0    1.4  1  FR47             FR47-like protein
     0.0009   19.3   0.0     0.0016   18.5   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
       0.11   13.2   0.0       0.15   12.7   0.0    1.3  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
       0.12   12.0   0.0       0.19   11.2   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.5e-13   3.3e-10      34     117 .]      49     178 ..      31     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.5e-13
                     EEEE.EEETTEEEEEE...........................................EEEEEET..........TSTTEEEEEEEEESGGGTT CS
  Acetyltransf_1  34 gllv.aeedgeliGfi...........................................sllkipd..........ekggvayieslaVspeyrg 74 
                     +++    e+g l+Gf+                                                             ++++++ ++ +V+++y+g
      CDO69751.1  49 EIFTaRDENGSLVGFAlfslpgqlmlsteeqqkhgfldlmgklspegqkyyvetmgkevP-----KmndqffgiedAERNTYWCNFAMVREDYQG 138
                     45554566799*****88888888888888888888888777777777777776444440.....24444444444777888888********** PP

                     SSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  75 kGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     kG+++aL e + + a + g++   l  + +n + ++ YeklGF
      CDO69751.1 139 KGVARALFELATKDAAKTGATI-AL--TTTNARNVPIYEKLGF 178
                     ******************9944.66..4578899********9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.8   8.6e+03      34      46 ..      52      64 ..      49      68 .. 0.76
   2 !   39.7   0.0   1.8e-13     4e-10      39     111 ..     111     183 ..      96     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
  Acetyltransf_10 34 lvaeeggkivGvi 46
                      + +e+g++vG++
       CDO69751.1 52 TARDENGSLVGFA 64
                     5667889999987 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 1.8e-13
  Acetyltransf_10  39 ggkivGvielrdgshisll.fVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFkavge 111
                      +++  G+   +++ + + + +V+++y+g+G+++aL+e + + a k g   ++ +  ++   vp+YeklGFk +g+
       CDO69751.1 111 NDQFFGIEDAERNTYWCNFaMVREDYQGKGVARALFELATKDAAKTGA--TIALTTTNaRNVPIYEKLGFKLHGQ 183
                      677788888855556666659*********************976654..57777777789**********9876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.99   2.2e+03       4      22 ..      49      68 ..      35      88 .. 0.67
   2 !   35.6   0.0   4.3e-12   9.5e-09      13      75 ..     113     179 ..      93     180 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.99
                    EEEEEEET.TEEEEEEEEEE CS
  Acetyltransf_7  4 evfVaedd.gkivGfialsl 22
                    e+f a+d+ g  vGf+ +sl
      CDO69751.1 49 EIFTARDEnGSLVGFALFSL 68
                    55666665566667665544 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 4.3e-12
                     EEEEEEEEEEES...TCTEEEE.E-GGGTTSSHHHHHHHH....TT.SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld...aeitrla.VdpeyrgkGiGraLlea....ae.kgiileqlelnaekaikfYeklGFe 75 
                     +++G       +   ++ +++a V+++y+gkG++raL e+    a+ +g ++  +++na ++++ YeklGF+
      CDO69751.1 113 QFFGIED----AernTYWCNFAmVREDYQGKGVARALFELatkdAAkTGATIALTTTNA-RNVPIYEKLGFK 179
                     3445333....134446666555****************64544115663322223333.7799*******8 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.7e-08   3.7e-05      66     126 ..     117     179 ..     109     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.7e-08
                     ETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--..SSHHHHHTTT-E CS
  Acetyltransf_9  66 vpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP..ssipiYrrfGye 126
                     + +++ ++++    +v  +++g+gv+++L + a +++++ g++++l +   +++piY+++G++
      CDO69751.1 117 IEDAERNTYWCNFAMVREDYQGKGVARALFELATKDAAKTGATIALTTTnaRNVPIYEKLGFK 179
                     56677777888888********************************99876779*******97 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     4e-07    0.0009      28      81 ..     131     182 ..     128     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4e-07
                 EE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  28 qvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekie 81 
                  v+++ +++G ++ l +  +k+ a+ g t+ l   ++N +   +yeklGf++  
  CDO69751.1 131 MVREDYQGKGVARALFELATKDAAKTGATIALT--TTNARNVPIYEKLGFKLHG 182
                 599************************998765..68999999*******9875 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.1e-07    0.0016      24      64 ..     124     164 ..      98     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.1e-07
  Acetyltransf_CG  24 vldfthTeVpeelrGkGiAkkLvkaalddareeglkvvptC 64 
                      ++  +   V e ++GkG+A++L + a +da ++g ++ +t 
       CDO69751.1 124 TYWCNFAMVREDYQGKGVARALFELATKDAAKTGATIALTT 164
                      666666789***************************98875 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.7e-05      0.15      70     138 .]     116     179 ..      73     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
  Acetyltransf_3  70 glrdleeedeeaelgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     g+ d+e+++ ++++  m++++++gkG+a+   + +++ a ++       +   ++N + + ++eklGf+
      CDO69751.1 116 GIEDAERNTYWCNF-AMVREDYQGKGVARALFELATKDAAKTG----ATIALTTTNARNVPIYEKLGFK 179
                     55566666664554.57899********999999999995555....7788899999999********7 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.7e-05      0.19     189     237 ..     133     181 ..     130     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.7e-05
  GNAT_acetyltran 189 kedyrrkgLAtivaaalileclkrglyPsWDaaneaSvaLaekLGYefe 237
                      +edy++kg A+++ +   +++ k g +    + n   v ++ekLG+++ 
       CDO69751.1 133 REDYQGKGVARALFELATKDAAKTGATIALTTTNARNVPIYEKLGFKLH 181
                      89********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1469.75
//
Query:       CDO69752.1  [L=470]
Description: hypothetical protein BN946_scf184697.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-62  210.7   8.7    1.6e-62  210.6   5.7    2.1  2  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
    3.6e-36  124.8   0.0    7.4e-36  123.8   0.0    1.6  1  Peptidase_M48    Peptidase family M48
  ------ inclusion threshold ------
       0.05   12.8   0.1      0.095   11.9   0.1    1.4  1  Peptidase_M56    BlaR1 peptidase M56
        1.2    8.5  14.2      0.061   12.7   8.5    1.7  2  ABC2_membrane    ABC-2 type transporter


Domain annotation for each model (and alignments):
>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6   5.7   3.6e-66   1.6e-62       2     182 .]      49     231 ..      48     231 .. 0.98
   2 ?    0.4   0.0      0.11     5e+02     125     153 ..     358     386 ..     356     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 3.6e-66
  Peptidase_M48_N   2 lrklketkkvPeeladaitkekfdksraYgldksrfglvsslyslilllallllgllpflwklsgkl...lgldaeseilqslvfllllslist 92 
                        ++++t+ +P+ la++++ ++f+ks+aYg+dk++f+l+s+ly+++++ ++l++gl+++ wk++gk+   lg+ +e eilqs++f ++l+++s 
       CDO69752.1  49 FPLYSKTE-PPPVLAEHFKPDTFKKSQAYGKDKAKFSLFSGLYKQVIESLFLHYGLVAWSWKAAGKIiakLGYGQEYEILQSIAFTFTLLFVSG 141
                      56677886.***********************************************************99999********************* PP

  Peptidase_M48_N  93 lislPfslYstFviEekhGfnkqtlklfikdklkslllalviglpllaallwiiewggeyfylylwlfllvfslllmtiyPtlIaPLFnK 182
                      l slP+s+Y+tFv+EekhGfnk+t++lf++d+lk++++++vig+p+la++l i++w+g++f+ +l++fll+f++ ++++yPt+I+PLFnK
       CDO69752.1 142 LPSLPLSVYQTFVLEEKHGFNKTTPALFVADMLKGWAIGFVIGAPFLAGFLSIFKWAGDRFVPWLMAFLLIFQMSMVVLYPTVIQPLFNK 231
                      *****************************************************************************************9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
  Peptidase_M48_N 125 lkslllalviglpllaallwiiewggeyf 153
                      +  +ll +++++pl a++ ++++++ ++f
       CDO69752.1 358 IVAFLLYQMLLAPLEAIVAMLMNAVSRRF 386
                      67899****************99998877 PP

>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   1.7e-39   7.4e-36       1     195 [.     234     454 ..     234     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 1.7e-39
                    E--SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT....-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   1 plreaelkevveelakeaglpkpltkvyvvnspkr....NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasi 92 
                    pl+e++l++ +e la+++++  pl+++y+++++kr    NA++ g  ++k+iv++d+L+ +  ++ee++aVl+HElGH+   h  + l+ s+   +
     CDO69752.1 234 PLPEGDLRTRIEALASKLKF--PLKHLYEIDGSKRsshsNAYFFGLPWSKHIVVFDTLI-KQSKPEEVEAVLAHELGHWYYMHPSKLLLLSQFHLF 326
                    67899***************..*********99999999********************.99*************************999999999 PP

                    HHHHHHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT................HHHHHHHHHHHHHHHHT.........TT.HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxx RF
  Peptidase_M48  93 llllglallisraeedaagafldalavliglliillfl................alSRkrEyqADeagvel.........lkrakdlvraliklak 163
                     +l ++ +++++  + +a+ f  + a     + ++l +                a+SR++Ey+AD+++ el         +   + l ral++l+ 
     CDO69752.1 327 TILALFPAFLRAPPLLRAFDFPPSVAAKPPTIVAFLLYqmllapleaivamlmnAVSRRFEYEADRFACELqtmlkdekmADMGDRLGRALVTLHV 422
                    99999988888888888888755444332222222222345779************************987332222111122345789******* PP

                    HTT--S---HHHHHHS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 164 dlerqdvsaslrsellstHPplleRiqalkel 195
                    +++++   ++l+s+++++HP l+eR++al+++
     CDO69752.1 423 ENLSTVWVDWLYSAYHHSHPTLTERLRALERY 454
                    *****************************975 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.1e-05     0.095     109     206 ..     205     308 ..     201     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
  Peptidase_M56 109 Wivgalilllyliaallvlkkr.fvrklgklraeelkeaLkeakeemq..lkrniki..rlsssidsPavlgllk.prIvlPadflkklsdeeley 198
                    W++ +l+++ +++ +l     + ++ kl++l +  l  ++++  ++ +  lk+  +i  ++ ss ++  ++gl +   Iv+ + + k+ + ee e 
     CDO69752.1 205 WLMAFLLIFQMSMVVLYPTVIQpLFNKLSPLPEGDLRTRIEALASKLKfpLKHLYEIdgSKRSSHSNAYFFGLPWsKHIVVFDTLIKQSKPEEVEA 300
                    88888887766666655555455999*******9*******99999997788877882246677889999**966268****************** PP

  Peptidase_M56 199 illHElaH 206
                    +l+HEl H
     CDO69752.1 301 VLAHELGH 308
                    ******99 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.5   1.4e-05     0.061      33     145 ..      98     217 ..      86     225 .. 0.78
   2 ?   -2.7   0.3      0.72   3.2e+03     135     135 ..     356     356 ..     303     385 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
  ABC2_membrane  33 alvfgtvfgnlgnsedglnr.........pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqaliflliv 119
                    +l +g+v ++++   ++++          +  ++f+++ l++s+l s+ p+++++  vle+++ ++  +++a ++a +l   ++++++++ fl+ +
     CDO69752.1  98 FLHYGLVAWSWKAAGKIIAKlgygqeyeiLQSIAFTFTLLFVSGLPSL-PLSVYQTFVLEEKHGFNK-TTPALFVADMLKGWAIGFVIGAPFLAGF 191
                    577888888877433333223667777877777888888887788888.******************.**************************** PP

  ABC2_membrane 120 yflvgldlsrfflflllllltalaas 145
                    + ++ +  +rf+  l+++ll++++++
     CDO69752.1 192 LSIFKWAGDRFVPWLMAFLLIFQMSM 217
                    ***99999999444444444444443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.72
  ABC2_membrane 135 l 135
                    +
     CDO69752.1 356 P 356
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3230.43
//
Query:       CDO69753.1  [L=262]
Description: hypothetical protein BN946_scf184697.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-32  110.1   0.0    3.1e-17   62.7   0.0    2.1  2  adh_short       short chain dehydrogenase
    1.9e-21   76.7   0.0    1.8e-11   44.0   0.0    2.1  2  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
      5e-08   33.1   0.1    8.7e-08   32.3   0.1    1.4  1  NAD_binding_10  NAD(P)H-binding
    7.2e-07   29.3   0.0    4.1e-05   23.6   0.0    2.2  2  KR              KR domain
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.075   12.5   0.0    1.9  2  Epimerase       NAD dependent epimerase/dehydratase family
       0.06   13.5   0.5        3.6    7.7   0.1    2.6  3  DUF4232         Protein of unknown function (DUF4232)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.1e-20   3.1e-17       2      96 ..       6      98 ..       5     103 .. 0.94
   2 !   45.9   0.0   1.5e-15   4.4e-12     127     189 ..     102     165 ..      97     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.1e-20
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96
                v lvtG ssG+Gr+++ + +++G +v+++ r++++l  + ++  +  +++ ++++Dvt+ +++  ++++a++ +g++dv+ nNAG++ ++ f e 
  CDO69753.1  6 VWLVTGSSSGFGRETVVQALERGDSVIATLRNPSALSDLTTQYPR--SRLRVVPLDVTSPAQIAHAFQEAKAAFGRVDVVFNNAGVEAVRFFREE 98
                679************************************999997..58*************************************988888775 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 1.5e-15
                 TTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEESSBSSHHHHH CS
   adh_short 127 ssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelap.tgirvnavaPGlvdTdmake 189
                 ++G   + s ++g+v+++ v+ Y+AsK+a++g+++slakel p ++i+v++v PG+++T++ ++
  CDO69753.1 102 RGGLLLQNSATVGLVGWPAVSFYAASKHALEGFSESLAKELDPaWNIKVVIVEPGAFKTAVLEK 165
                 56778888999******************************98367*************98776 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   6.1e-15   1.8e-11       1      80 [.      11      90 ..      11      99 .. 0.88
   2 !   31.0   0.0   6.1e-11   1.8e-07     118     179 ..     101     163 ..      90     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 6.1e-15
                  TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE----- CS
  adh_short_C2  1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...vlecDVtdeeqvealveevvekfgklDilvnnagia 80
                  G  sg Gr+++ ++ e+G +v++t +n +a   + +l+++++++   v+++DVt+++q++++++e+++ fg++D+++nnag+ 
    CDO69753.1 11 GSSSGFGRETVVQALERGDSVIATLRNPSA---LSDLTTQYPRSrlrVVPLDVTSPAQIAHAFQEAKAAFGRVDVVFNNAGVE 90
                  5679*************************9...666666666443447*********************************86 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 6.1e-11
                   TSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTGG CS
  adh_short_C2 118 keggsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTlaa 179
                    +gg ++  s + + +++p  + y+a+K+ale+++ +lA+el p  +i+v  v pg+ kT   
    CDO69753.1 101 PRGGLLLQNSATVGLVGWPAVSFYAASKHALEGFSESLAKELDPaWNIKVVIVEPGAFKTAVL 163
                   567889999999********************************77*************9875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   2.9e-11   8.7e-08       1      67 [.      11      86 ..      11     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.9e-11
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT...TTCEEEE--TT-CCHHHHHHT.......T-SEEEES CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleae...eglevvegdvtdvedlaealk.......gadaVvsa 67
                    G + + Gr+ v ++l+rg  +v a  Rnp+ l++l  +   ++l+vv +dvt+++++a+a++        +d+V+ +
      CDO69753.1 11 GSSSGFGRETVVQALERG-DSVIATLRNPSALSDLTTQyprSRLRVVPLDVTSPAQIAHAFQeakaafgRVDVVFNN 86
                    667789***********6.9*************998443348********************444444444555555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08   4.1e-05       3      98 ..       7      96 ..       6     102 .. 0.81
   2 ?    3.4   0.0     0.021        64     135     177 ..     110     152 ..     103     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98
                 l+tG   g+G+e++ + +e+g + ++ l R+  +++ s+ l+++      + +vv++Dv+++++++++++e+ka ++++  v++ Agv + + + 
  CDO69753.1  7 WLVTGSSSGFGRETVVQALERGDSVIATL-RN--PSALSD-LTTQ--YPRSRLRVVPLDVTSPAQIAHAFQEAKAAFGRVDVVFNNAGVEAVRFFR 96
                79********************9876655.77..233322.3332..23689999*********************************98877665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
                 EEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE-- CS
          KR 135 SSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwgl 177
                 S   gl+g +  + Yaa  + l+++ e+ +++  pa  i+  +
  CDO69753.1 110 SATVGLVGWPAVSFYAASKHALEGFSESLAKELDPAWNIKVVI 152
                 77789**************************999999888765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05     0.075       1      77 [.       7      92 ..       7     101 .. 0.78
   2 ?    0.1   0.0      0.15   4.4e+02     138     160 ..     120     142 ..     109     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT.....-SEEEE--S---H CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkeeq.....pdavihlAavggv 77
                +lVtG +   G+ +v + le+g  vi+  r++sa               ++v ld+t +++++ +f+e +     +d+v++ A+v  v
  CDO69753.1  7 WLVTGSSSGFGRETVVQALERGDSVIATLRNPSALSDLTT--QyprsrlRVVPLDVTSPAQIAHAFQEAKaafgrVDVVFNNAGVEAV 92
                59********************999999999555443333..2458999***********8888888754222227999999887666 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
                 -SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase 138 pnspYaaaKlageklveayaaqy 160
                   s Yaa+K+a e   e++a++ 
  CDO69753.1 120 AVSFYAASKHALEGFSESLAKEL 142
                 5688*******998888777664 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0012       3.6      66     110 ..      24      74 ..       5      93 .. 0.77
   2 ?    3.0   0.0     0.034     1e+02      30      77 ..     110     163 ..     102     187 .. 0.77
   3 ?   -1.7   0.0      0.99   2.9e+03      42      64 ..     189     211 ..     175     222 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
     DUF4232  66 tLapGesAyaglrwtnaggdgdgectaaglrvtppdgtksvtvp......d 110
                 +L+ G+s+ a+lr  +a +d + + +   lrv+p d t++++++      +
  CDO69753.1  24 ALERGDSVIATLRNPSALSDLTTQYPRSRLRVVPLDVTSPAQIAhafqeaK 74 
                 59**********************9999*********99999986554433 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.034
     DUF4232  30 srtCtldGyPgVslldadgqqvgaaaeregpaavp......vtLapGesAyagl 77 
                 s+t  l G P Vs+  a+ ++++   e+ ++  +p      v ++pG+  +a l
  CDO69753.1 110 SATVGLVGWPAVSFYAASKHALEGFSESLAKELDPawnikvVIVEPGAFKTAVL 163
                 4788899********999999998877777777777888877788887666655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.99
     DUF4232  42 slldadgqqvgaaaeregpaavp 64 
                 ++l ++g++++++a+ +++++++
  CDO69753.1 189 AFLKGAGKEADTDADLHPSDPTK 211
                 56777888888888888886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1873.53
//
Query:       CDO69754.1  [L=379]
Description: hypothetical protein BN946_scf184697.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-16   60.9  28.6    1.9e-16   60.0  24.9    2.4  2  MFS_1     Major Facilitator Superfamily
    0.00014   20.9  16.5     0.0046   15.9   6.6    2.7  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0  24.9   2.1e-20   1.9e-16     111     352 ..       2     293 ..       1     294 [. 0.80
   2 !    2.0   0.1     0.009        81     149     177 ..     350     376 ..     337     379 .] 0.84

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.1e-20
       MFS_1 111 adwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee..................... 188
                 +d++p ++rg   g+ +++f++G + g++lgg+la+s+gWr++   + ++++la++ +++ l  ++++ + ++ k  +                     
  CDO69754.1   2 SDIAPLRKRGTLQGFGNIAFAAGQATGAPLGGFLADSIGWRWL-EPCVPLTALAILSVGFGLKLPHSSTGDFRAKLVRidfagaatlviavftlllgld 99 
                 7999**************************************9.4455555555555556666666666666665555999999*************** PP

       MFS_1 189 ..............................kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalv 256
                                                ++++ p++p  k +++++ l+ ++l+ l++ + +  +l++++ lylq v+g s +  +gl+l  + ++
  CDO69754.1 100 rggnvawndritiaslsasvvflaaftaveLRWAREPFAP--KRIVANRALLaSYLCNLFSSG-AAITLVYHISLYLQAVRGAS-ASDVGLILLPTIFG 194
                 ****************************************..777777755445555555554.4444****************.79999888888888 PP

       MFS_1 257 gailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                 g+ ++l +g +++ +gr  + +l++++++++++g + +a+ +  v + l +l++      +g+g   +s l+ +  +a+pe ++ a+++  +++slg++
  CDO69754.1 195 GVTGSLTTGLVMQSTGR--YYVLTIVVFTVMLAGNLTVALVTGVVKYSLlALIIgsaaNNLGYGSGLTSTLVSLIANAGPEDQAIATAVSYLFRSLGSV 291
                 88889899999999999..8888888888888888888888333333332333366655557777766777777777778******************* PP

       MFS_1 351 lg 352
                 +g
  CDO69754.1 292 IG 293
                 98 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.009
       MFS_1 149 gWravfyilaivsllafvlfllllpeepp 177
                 g +a+f++  ++s++ +v+   +++ e+p
  CDO69754.1 350 GLQAAFWFTVGLSAMTVVI--TFFVKEQP 376
                 6799************776..88887776 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   8.6e-06     0.077     128     194 ..       2      67 ..       1      69 [. 0.95
   2 !   15.9   6.6   5.1e-07    0.0046      43     128 ..     164     269 ..      88     310 .. 0.71
   3 ?   -2.1   0.4      0.15   1.3e+03     285     306 ..     350     371 ..     346     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-06
                 HTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 128 sEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPES 194
                 s iAp ++Rg+l ++ + a ++G+  +a +g +l+++ + ++w  ++    ++a+l + ++l lP S
  CDO69754.1   2 SDIAPLRKRGTLQGFGNIAFAAGQATGAPLGGFLADSIG-WRWLEPCVPLTALAILSVGFGLKLPHS 67 
                 789*******************************99999.999999*999**************988 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.1e-07
                 H..................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH.HHHHHHH-TTTT..SS-TGGGGGHHH..HHHHHHHHHH CS
    Sugar_tr  43 e...............ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfv.igavlqaaakgk..nsvevlivgRvl..vGigvGlasv 121
                 +               s++++gli+  +++G++ Gsl++gl+++  GR ++l i+++ ++ +g++  a+ +g    s+ +li+g     +G g Gl+s+
  CDO69754.1 164 TlvyhislylqavrgaSASDVGLILLPTIFGGVTGSLTTGLVMQSTGRYYVLTIVVFTVMlAGNLTVALVTGVvkYSLLALIIGSAAnnLGYGSGLTST 262
                 04444444445555557899********************************99776655055555555555466677777888554336777788888 PP

                 HHHHHHH CS
    Sugar_tr 122 lvPmyis 128
                 lv++ ++
  CDO69754.1 263 LVSLIAN 269
                 8877654 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.15
                 S-THHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 285 glsksllvtiivgvvnfvatfv 306
                 gl+  +++t++++++++v+tf+
  CDO69754.1 350 GLQAAFWFTVGLSAMTVVITFF 371
                 6667778888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2550.81
//
Query:       CDO69755.1  [L=327]
Description: hypothetical protein BN946_scf184697.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0029   16.7   1.6     0.0029   16.7   1.6    1.8  2  7tm_6     7tm Odorant receptor
  ------ inclusion threshold ------
        1.1    9.5  13.9         11    6.4   7.5    2.8  3  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> 7tm_6  7tm Odorant receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.6   3.3e-07    0.0029      63     150 ..      44     129 ..      32     133 .. 0.79
   2 ?   -3.1   1.5      0.35   3.1e+03     112     112 ..     218     218 ..     163     264 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.3e-07
       7tm_6  63 rrk...fllvilfilasalalililvkmvldhetnsplpleipfpydwnasegmyyisyafqilgvlfsvlqnillDvlfcslllflclhl 150
                 r +   ++++++++   +++++   v++v+++e    + +++ +p+     +   y ++++q+lg++ s++ n+++D+l+++ ++++ + +
  CDO69755.1  44 R-SsdhRFFLYFSTALLLMITVYVAVQAVFGEEM---WIVNAEYPGGSA-AYLAEYAAVWYQTLGSAASIVLNLMSDGLLIYRCYVVWGDI 129
                 2.22445778888888888888888999999999...999999977555.8888888*************************999987665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.35
       7tm_6 112 g 112
                 +
  CDO69755.1 218 V 218
                 1 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0013        12      25      80 ..       5      65 ..       2      75 .. 0.71
   2 ?   -1.8   0.4       0.4   3.6e+03      63      70 ..     136     143 ..      86     152 .. 0.58
   3 ?    6.4   7.5    0.0012        11      29      86 ..     167     230 ..     129     242 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
     DUF1772 25 lkqwrrlfkrgkavfpplallsalafayla.......araasrgarllylaaaallllsivpy 80
                + ++++++ +g+ +   l  + ++++++ +        r++s++++ ly+ +a+ll+  i +y
  CDO69755.1  5 NAVFQNCYYVGNNFNAILYGIELVLYFLSVriiwtskERRSSDHRFFLYFSTALLLM--ITVY 65
                678999999998888887777777776344788898977777888888867666677..4444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.4
     DUF1772  63 rllylaaa 70 
                 +llyla+a
  CDO69755.1 136 ALLYLATA 143
                 23333333 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0012
     DUF1772  29 rrlfkrgkavfpplallsalafa.yla.....araasrgarllylaaaallllsivpyTllvmv 86 
                 + ++++ ++v+++ +++s+l  a  ++     + a + +a++ y++aaal++ s +pyTl+ + 
  CDO69755.1 167 QIALSYSSVVIGLNVIVSTLICArIFFlaskmRGALGYEAAKAYTGAAALIVESALPYTLFGIA 230
                 334445688999988888888886666889*9888888999999898999999*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2234.05
//
Query:       CDO69756.1  [L=874]
Description: hypothetical protein BN946_scf184766.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-11   43.1   0.2    2.2e-10   40.6   0.0    2.2  2  Dsl1_C          Retrograde transport protein Dsl1 C terminal
    1.8e-09   36.7   0.1      0.011   14.3   0.2    3.2  3  Zw10            Centromere/kinetochore Zw10
     0.0027   17.5   0.0     0.0057   16.5   0.0    1.5  1  Activator-TraM  Transcriptional activator TraM
  ------ inclusion threshold ------
      0.032   14.2   0.4       0.47   10.5   0.3    2.6  2  RIG-I_C         RIG-I receptor C-terminal domain


Domain annotation for each model (and alignments):
>> Dsl1_C  Retrograde transport protein Dsl1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.25   1.1e+03      11      38 ..      45      72 ..      22      98 .. 0.83
   2 !   40.6   0.0   4.9e-14   2.2e-10       4     183 ..     678     863 ..     675     868 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHHHHHHHHHHHHHHHTS CS
      Dsl1_C 11 lletnlalkkkivkkllqeqlqelkene 38
                 l++ l ++kk ++  ++++l e++++ 
  CDO69756.1 45 ELDNTLRITKKRIHDRISSDLPEFQRQY 72
                4789999999999999999999999864 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 4.9e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHTSSS---HHHHHTHHHHHHHTHHHHHHTT...--HHHHHHHHHHHHHTTHHHHHHTSS---HHH CS
      Dsl1_C   4 lkeltarlletnlalkkkivkkllqeq..lqelkeneknpsWdatiesllPflkkeilnaleklteeedekvllkllkflfndvvikeilkWkiisekn 100
                 l+ l   + e  +a+ ++ + kll+    + +  ++e+  + ++ i+++l  +++ + +    l++      l +l++  +   v+ +il  + i+e++
  CDO69756.1 678 LRVLADSWFEDAIAKEERLIDKLLDGArgFIDTTHQERYDECESAINEVLQRIRRVVPEWKAVLAKSRYYDALGALVETAISR-VLGDILALEDITEVE 775
                 56677788899999999999999986512556778899999999999999999988888777887777777788888877765.5689*********** PP

                 HHHHHHHHHHHHHHT--GGGTT-H......HHHHHHHHHHHHHHHHT--HHHHHHHHHTTGGGGS-HHHHHHHHHHHS---HHHHHHHH CS
      Dsl1_C 101 senlseliklllnateidslekee......kyrelreklailakllplhlkdilemfynGdfylfateeiiqWilllfadtplrrdaid 183
                 s+ lsel ++l na+e   +e+ e      +y  +  k++ l+ ll++ + di  +f +G +  f+ +e+++ +  lfadtplr  +i 
  CDO69756.1 776 SHRLSELCRIL-NALEGLFVEDPEqpsfvvSYVPSWLKFSYLSELLEASIADISYLFEEGALVDFEIDELVKLVRALFADTPLRASTIS 863
                 *******9976.4444333333221112227999999***********************************************99986 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   2.5e-06     0.011       7      89 ..      34     117 ..      29     135 .. 0.86
   2 !    9.4   0.0   7.9e-05      0.36     320     402 ..     266     349 ..     256     409 .. 0.77
   3 !    8.9   0.0   0.00011      0.49     458     533 ..     569     654 ..     557     657 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-06
        Zw10   7 lekedlekkisklekkveeikeevskmivkkYseflelsssaeellerveslskeidalkkkven.eieqdlkaaveelaelkq 89 
                 l++ + +  +s+l + ++ +k+++ + i+    ef+   ++a  + er++sls+++d+l + + + +  ++  + +e +a+lk+
  CDO69756.1  34 LNAKSASDWVSELDNTLRITKKRIHDRISSDLPEFQRQYDTAVSVQERLRSLSDNVDVLEESITDpQNAPEPLQRSEVMADLKR 117
                 56677788899999*************************************************994444555566677777776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 7.9e-05
        Zw10 320 lseliikdcLvksiPenssklekyqevieqteeFeeaLkelefls.edesdLlkyardvnvhFaskkcqdvlvkArkLltseih 402
                 l  +i++++L +  P   skl +y    e+  + e+++    + +   e+++  +  +++ h+  k+  ++l  Ar +  s  +
  CDO69756.1 266 LRTAILNQLLLPHLPSSLSKLPDYLLFAERAVQVEDQIVVKMLGDaTGERSIKAWVDNIGLHYERKRRAEILDRARAIFVSPDD 349
                 66789*******************************998766666788999*9***********************99876544 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00011
        Zw10 458 rvSesvqklmeLaektLkeatt..ssa....ecavq....LfytvrnifelyvdvvPtyhkenLeklpqlsalfhNnCmYiahlll 533
                 +vS  +++l++L+e+ L+e t+  ss      +a+     L+ ++ + +el+ + vP   + +L++ p+    f N+C ++ ++l+
  CDO69756.1 569 VVSGRTKDLLQLLEDVLHEGTElvSSGvlkpTVAMSpgnlLMQAAPMALELFRALVPIANATLLQQSPKEPMRFANDCRFVGEELV 654
                 7899999999999999999886333321111233112344899999**********************************999886 PP

>> Activator-TraM  Transcriptional activator TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0057      40     129 ..     664     757 ..     653     768 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
  Activator-TraM  40 akaqqelldqfkeeleaiasrWgddakekaervlnaalaaskealvkllqeg...akeaaevvrkeveaalarlkssirearrvall.nlvasa 129
                     ++a q+ l++  e l  +a  W +da  k er+++  l  +++ + ++ qe    +++a++ v +++   + + k+ + ++r   +l +lv +a
      CDO69756.1 664 KAATQDKLQEGVESLRVLADSWFEDAIAKEERLIDKLLDGARGFIDTTHQERydeCESAINEVLQRIRRVVPEWKAVLAKSRYYDALgALVETA 757
                     68999****************************************9999996222566777777888888888888888888776553455555 PP

>> RIG-I_C  RIG-I receptor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3    0.0001      0.47      33     115 ..      22     102 ..      12     138 .. 0.80
   2 ?    0.1   0.0      0.17   7.5e+02       4      30 ..     708     734 ..     706     747 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
     RIG-I_C  33 lltrieelsklkksdfgtqkYeqwvvklekkaakeeerkkrvcaltcaehLrkYndALiinddaRt.sdAleyLekflndlkek 115
                 +l   ++ s+ + +d + ++ ++wv++l + ++  ++r  ++++    e+ r+Y  A  +++++R  sd +++Le+ ++d +++
  CDO69756.1  22 IL---TKISETTLKDLNAKSASDWVSELDNTLRITKKRIHDRISSDLPEFQRQYDTAVSVQERLRSlSDNVDVLEESITDPQNA 102
                 34...4455566799******************77777777777799******************627**********997766 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
     RIG-I_C   4 idkvkerkkdpfgeaikeimskiedkl 30 
                 id +++ + d++  ai+e+ ++i + +
  CDO69756.1 708 IDTTHQERYDECESAINEVLQRIRRVV 734
                 67889999*************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5801.96
//
Query:       CDO69757.1  [L=360]
Description: hypothetical protein BN946_scf184766.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.4   0.0    4.1e-19   68.8   0.0    1.9  1  Rep_fac_C        Replication factor C C-terminal domain
    1.4e-17   64.4   0.0    2.2e-17   63.7   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.9e-15   56.4   0.0    3.3e-12   46.5   0.0    2.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    2.1e-09   37.6   0.0      6e-09   36.1   0.0    1.8  1  Rad17            Rad17 P-loop domain
    6.3e-07   29.3   0.0    3.2e-06   27.0   0.0    2.0  2  AAA_30           AAA domain
    1.1e-06   28.6   0.3    0.00054   19.8   0.0    2.2  2  AAA_11           AAA domain
    6.5e-06   25.5   0.0      1e-05   24.9   0.0    1.2  1  DUF815           Protein of unknown function (DUF815)
    1.2e-05   25.3   0.2      5e-05   23.3   0.0    2.0  2  AAA_14           AAA domain
    2.4e-05   24.6   0.1    7.6e-05   23.0   0.0    2.0  1  AAA_assoc_2      AAA C-terminal domain
    5.2e-05   23.1   0.0    9.9e-05   22.2   0.0    1.4  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    0.00016   21.5   0.0    0.00032   20.5   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00016   22.1   0.0    0.00072   20.0   0.0    2.0  1  AAA_16           AAA ATPase domain
    0.00024   21.4   0.4      0.065   13.6   0.0    2.6  2  AAA_19           AAA domain
    0.00041   20.1   0.0     0.0008   19.2   0.0    1.4  1  AAA_24           AAA domain
    0.00061   20.1   0.1      0.055   13.8   0.1    2.4  1  AAA_22           AAA domain
    0.00076   19.5   0.1      0.009   16.0   0.1    2.6  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00079   19.2   0.3     0.0024   17.7   0.3    1.8  1  DEAD             DEAD/DEAH box helicase
      0.001   19.1   0.0      0.012   15.6   0.0    2.1  2  ResIII           Type III restriction enzyme, res subunit
     0.0012   18.7   0.0     0.0022   17.9   0.0    1.4  1  AAA_3            ATPase family associated with various cellul
     0.0051   16.3   0.0      0.012   15.1   0.0    1.6  1  AAA_7            P-loop containing dynein motor region
      0.006   16.0   0.1       0.24   10.8   0.0    2.3  2  TniB             Bacterial TniB protein
     0.0066   16.2   0.1      0.018   14.8   0.1    1.8  1  Methyltransf_31  Methyltransferase domain
     0.0089   15.8   0.0       0.02   14.6   0.0    1.6  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.026   14.4   0.1      0.046   13.6   0.1    1.4  1  ATPase_2         ATPase domain predominantly from Archaea
      0.036   13.1   0.0      0.087   11.9   0.0    1.6  2  T2SSE            Type II/IV secretion system protein
       0.05   12.7   0.0      0.082   12.0   0.0    1.3  1  MCM              MCM P-loop domain
      0.088   12.5   0.0       0.17   11.6   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.095   11.4   0.0       0.17   10.6   0.0    1.3  1  SNF2_N           SNF2 family N-terminal domain
      0.098   12.0   0.0       0.43    9.9   0.0    1.9  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.12   12.4   0.0       0.28   11.3   0.0    1.7  1  FliH             Flagellar assembly protein FliH
       0.12   12.6   0.0       0.26   11.5   0.0    1.7  1  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   7.1e-22   4.1e-19       1      87 [.     262     347 ..     262     348 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 7.1e-22
                 --HHHHHHHHHHHHHT-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHH CS
   Rep_fac_C   1 phpteieeileaclngdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsalla 87 
                 php++ie+i++++l++df++ y+ ++ l++e+G+++ d+++   +++ +  +++ ++++++l+ l+++e+rl++G++e++ql+all 
  CDO69757.1 262 PHPADIETIVNSMLQDDFTTSYNMINALKTERGLALPDLINGASEYLET-INFKPNARIYLLDFLATTEYRLSTGGNEKIQLTALLG 347
                 8************************************************.68*********************************96 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   3.9e-20   2.2e-17       1     130 [.      77     195 ..      77     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 3.9e-20
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                 +l+yGppGtGKT+++ ava+ +       ++le+++s+ +  ++v e+ k+++e+ +  ++    + +++DE+d ++++            +++L +++
  CDO69757.1  77 LLFYGPPGTGKTSTILAVARRIygadyRKQILELNASDDRgIDVVREQIKNFAETRTLFSKG--YKLIVLDEADMMTTAA-----------QSALRRVI 162
                 69*******************844433488**********4445555555555444443333..5***********9999...........******** PP

                 HHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  94 dgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                 ++++k   +v +++++n+++k+ pa+  +R++r  + 
  CDO69757.1 163 EQYTK---NVRFCIICNYVNKIIPAIQ-SRCTRFRFS 195
                 *****...6******************.999987665 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   5.7e-15   3.3e-12       5     162 ..      61     197 ..      57     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 5.7e-15
  DNA_pol3_delta2   5 alkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieel.sr 97 
                      + + ++k ++++rl h +Lf+G+ g+gk ++ l++a+++   + ++           +i + + +D       ++     +d +re i+++ + 
       CDO69757.1  61 ITSTIEKFIEKNRLPH-LLFYGPPGTGKTSTILAVARRIYGADYRK-----------QILELNASD-------DR----GIDVVREQIKNFaET 131
                      5666777888888888.68888888888888888888888776663...........466655544.......34....567777444444044 PP

  DNA_pol3_delta2  98 kpre.skkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                      ++     +k+i++++a++mt++A+ al +++E   +n+ f +i +  nk+++ i+SRc  ++fspl
       CDO69757.1 132 RTLFsKGYKLIVLDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPL 197
                      44442679********************************************************97 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     1e-11     6e-09       2      81 ..      36     111 ..      35     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1e-11
       Rad17   2 kedenelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvv.kvLskelgiklrewlnpvs 81 
                 +++en +W+eky+P +++++  hk   + ++++++ + L++     LL  GP+G gk+ ++  v  +++g ++r+ +  ++
  CDO69757.1  36 YDNENLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPH-----LLFYGPPGTGKTSTIlAVARRIYGADYRKQILELN 111
                 689999**************************999999987.....69*********866615556789999999875555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   5.5e-09   3.2e-06      22     121 ..      78     171 ..      62     172 .. 0.78
   2 ?   -0.8   0.0       1.8   1.1e+03     161     183 ..     220     242 ..     204     248 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 5.5e-09
      AAA_30  22 vltGpAGtGKtta.lkalreaweaa.ggrvi.glAptgkaAkvLaeelgieastiakllkrlkgrarlepg.tllivDEagmvdtkqlaallkaaekag 116
                 +  Gp+GtGKt + l+++r+++ a+  ++++ + A+  +  +v++e++   a+t   +            g +l++ DEa m+ t+   al + +e++ 
  CDO69757.1  78 LFYGPPGTGKTSTiLAVARRIYGADyRKQILeLNASDDRGIDVVREQIKNFAETRTLFS--K--------GyKLIVLDEADMMTTAAQSALRRVIEQYT 166
                 557*******965156669999999777776477999999999**99998887766555..2........339**********************9988 PP

      AAA_30 117 akvil 121
                   v++
  CDO69757.1 167 KNVRF 171
                 88876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
      AAA_30 161 eeraaalalregdaeealealad 183
                 + ++a l+l++gd+++al+ l++
  CDO69757.1 220 DGKKALLKLSKGDMRRALNVLQA 242
                 56789999*******99988765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.3e-07   0.00054      12      42 ..      67      99 ..      58     117 .. 0.74
   2 !    6.9   0.1    0.0081       4.7     165     223 ..     116     174 ..     103     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.3e-07
      AAA_11 12 salsese..itliqGPPGtgKTktivellsqll 42
                ++++++     l+ GPPGtgKT+ti+++ ++++
  CDO69757.1 67 KFIEKNRlpHLLFYGPPGTGKTSTILAVARRIY 99
                5555555555799*****************994 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0081
      AAA_11 165 qerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviI 223
                 +  + +++++k++ ++ + + + ++  vldea++  t  ++a ++++e+++k+++ +iI
  CDO69757.1 116 RGIDVVREQIKNFAETRTLFSKGYKLIVLDEADMMTTAAQSALRRVIEQYTKNVRFCII 174
                 555677888889999999999999999*******************************9 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.7e-08     1e-05      13     150 ..      38     176 ..      28     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.7e-08
      DUF815  13 egalepveevdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellrerperf 109
                 +++l  ve++++v+ldd+v     ++++++ +e+f+e+++  ++L++G  GtGK s++ a+ +++  +    +++e++ +d + ++ + e++++ +e  
  CDO69757.1  38 NENLPWVEKYRPVTLDDVVS----HKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGADyrKQILELNASDDRGIDVVREQIKNFAETR 132
                 45577778888888888775....56789999********************************99888556799999999999999999999999999 PP

      DUF815 110 ilfvDD...LsFeeeeeeyksLksvLeGsleakpenvliyaTsN 150
                  lf      +  +e +    + +s+L   +e+ ++nv++    N
  CDO69757.1 133 TLFSKGyklIVLDEADMMTTAAQSALRRVIEQYTKNVRFCIICN 176
                 99976533256788888888888888888888888888876665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         2   1.2e+03      63      90 ..      45      72 ..      19      80 .. 0.66
   2 !   23.3   0.0   8.6e-08     5e-05       6      97 ..      78     173 ..      73     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2
      AAA_14 63 ekktylflDEiqevpewekalkslvdeg 90
                ek + + lD +   +++ +++ ++++++
  CDO69757.1 45 EKYRPVTLDDVVSHKDITSTIEKFIEKN 72
                3334478888888888888888888766 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 8.6e-08
      AAA_14   6 vitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelilek..lkeekktylflDEiqevpe.wekalkslvdeg.knldviv 97 
                 +  G+  +GKT  +  ++++ +    +++il++n  d+r  +   + ++ ++   +  ++ ++ ++++lDE+ ++++ +++al+++++++ kn+++++
  CDO69757.1  78 LFYGPPGTGKTSTILAVARRIYgaDYRKQILELNASDDRGIDVVRE-QIKNFAETRtlFS-KGYKLIVLDEADMMTTaAQSALRRVIEQYtKNVRFCI 173
                 6679999***********9999987899*******99988665544.2333333334244.58999*******9977367899999998888999876 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.3e-07   7.6e-05       4      41 ..     214     257 ..     211     290 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.3e-07
                  .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......X CS
  AAA_assoc_2   4 klkleddalealaeladGDaRkaLnlLElaaeaaeak......e 41 
                   ++l++d  +al++l++GD+R+aLn+L+++ +a e +      +
   CDO69757.1 214 GVRLTEDGKKALLKLSKGDMRRALNVLQACHAAYEISgeteiyN 257
                  688999**********************9988877644444441 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.7e-07   9.9e-05      25     170 ..     105     241 ..      94     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.7e-07
                     TTEEEEEEEE-STTS-HHH.HTTTSTTTTSSSS.EEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTE CS
  DNA_pol3_delta  25 qgfedlnyikfdlnedwiddvleecetlpffsd.krivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkka 118
                     +++ +ln ++  + ++  +++ + +et  +fs+  +++vl+ +      +  +   + +L ++++++ +++ +++i++      +k++  ++++ 
      CDO69757.1 105 KQILELNASDDRGIDVVREQIKNFAETRTLFSKgYKLIVLDEA------DMMTTAAQSALRRVIEQYTKNVRFCIICN----YVNKIIPAIQSRC 189
                     556666666666667777889999*******963799999999......557888899********************....5679********* PP

                     EEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHH CS
  DNA_pol3_delta 119 tvveaktlkeeelkkwiqkraqelglkiekealelLlelvennlsaikqele 170
                     t +++++l  +e+ k +++++q++g+ ++++  + Ll+l+ ++++++ + l+
      CDO69757.1 190 TRFRFSPLPMSEVEKRLDNVIQAEGVRLTEDGKKALLKLSKGDMRRALNVLQ 241
                     ********************************************99988775 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.6e-07   0.00032       2      56 ..      48      97 ..      47     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.6e-07
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiake 56
                rP +l++ +  ++++++++ fie      + l h+l+yGpPG Gkt+    +a+ 
  CDO69757.1 48 RPVTLDDVVSHKDITSTIEKFIEK-----NRLPHLLFYGPPGTGKTSTILAVARR 97
                999*****************9984.....5599*************987777765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.2e-06   0.00072      19      52 ..      69     106 ..      58     226 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.2e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd....g 52 
                 + ++r + +l++G++G+GK+s + +++r++ ++     
  CDO69757.1  69 IEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAdyrkQ 106
                 4566779******************9999887755440 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00011     0.065      11      62 ..      75     125 ..      66     136 .. 0.70
   2 ?    6.5   0.0     0.017        10      94     129 ..     129     165 ..     109     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00011
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeil.lvaftgrAakelrerl 62 
                 ++ll  ++pGtGKT ++ ++ + +  +  +  ++il l a   r  + +re++
  CDO69757.1  75 PHLLFYGPPGTGKTSTILAVARRIYGADYR--KQILeLNASDDRGIDVVREQI 125
                 578889***********9998887766655..455514466667777777776 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.017
      AAA_19  94 aeeekklqeee.llivDEfqdvdelqyrLlkallgek 129
                 ae+++ + +++ l++ DE+ +++  +++ l+++ ++ 
  CDO69757.1 129 AETRTLFSKGYkLIVLDEADMMTTAAQSALRRVIEQY 165
                 3455566778889**********77777777777554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.4e-06    0.0008       5      87 ..      77     160 ..      75     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-06
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel....aaeladyktlviDtideleelclaevir 87 
                 +l yGp+g+GKT++++    ++   d  k   +l+a +     +++ ++++++ +        ++yk +v+D +d +   +   ++r
  CDO69757.1  77 LLFYGPPGTGKTSTILAVARRIYGADYRKQILELNASDDR---GIDVVREQIKNFaetrTLFSKGYKLIVLDEADMMTTAAQSALRR 160
                 678***************6666666666666666666655...4455555555554444667899*********9998776665554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   9.5e-05     0.055       7      70 ..      76     135 ..      71     181 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.5e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka 70 
                 +l+ +G++GtGKT ++  ++++     + ++ r+++++ +++ + + + +++++ ++ + ++  
  CDO69757.1  76 HLLFYGPPGTGKTSTILAVARRI----YGADYRKQILELNASDDRGIDVVREQIKNFAETRTLF 135
                 68899********9999999986....3344455556666666665555565555555544333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.5e-05     0.009       1      91 [.      76     164 ..      76     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
                 EEEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsllee 91 
                 ++l  GppGtgK++ +  +a+++     ++++++ + ++d   + ++ +++       + +       +  +++vlDE +++ ++++++L +++e+
  CDO69757.1  76 HLLFYGPPGTGKTSTILAVARRIygadyRKQILELNASDDRGIDVVREQIK------NFAETRTL-FSKGYKLIVLDEADMMTTAAQSALRRVIEQ 164
                 7899*******************9774444444444444444444444444......34444333.345667899999999999999999888875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   4.1e-06    0.0024      76     150 ..      92     166 ..      60     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.1e-06
                 SEEEEEETTSSHHHHHHHH....HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSH CS
                 xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  76 lrvlliiggvaardqlskl....dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlp 150
                 l v   i g ++r+q+ +l    d+g+d+v    + ++   +t++l  +  +++VlDEad++     +  ++r+++q  
  CDO69757.1  92 LAVARRIYGADYRKQILELnasdDRGIDVVREQIKNFA---ETRTLFSKGYKLIVLDEADMMTTA-AQSALRRVIEQYT 166
                 45554566678888888885554466888876666555...599999*****************8.9999999999983 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-05     0.012      12      58 ..      61     108 ..      56     133 .. 0.79
   2 ?    1.1   0.0      0.58   3.4e+02     124     162 ..     130     170 ..     110     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-05
                 HHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EE CS
      ResIII  12 ienlleklks.krdkrglikmaTGtGKTlvaaklierllkkgkeekfl 58 
                 i++++ek+ + +r  ++l+  + GtGKT +++++++r++ + +++++l
  CDO69757.1  61 ITSTIEKFIEkNRLPHLLFYGPPGTGKTSTILAVARRIYGADYRKQIL 108
                 555666655326666************************999998877 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.58
                 ...HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEE CS
      ResIII 124 eseellrdrfdviiiDEaHrlgak..kswreilekfkeavl 162
                 e+ +l ++ +++i+ DEa  ++ +  ++ r+++e++ ++v+
  CDO69757.1 130 ETRTLFSKGYKLIVLDEADMMTTAaqSALRRVIEQYTKNVR 170
                 5566777888899****998877643588887777666654 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.7e-06    0.0022       1      88 [.      76     164 ..      76     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.7e-06
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfa...nllladeinrappktqsalleamee 88 
                 h+l+ g PG++kt ++ a+a+ +     r q+  +l  sd  G++v++e+ k+f  ++  +f+   +l++ de +  ++ +qsal  ++e+
  CDO69757.1  76 HLLFYGPPGTGKTSTILAVARRIYGADYRKQIL-ELNASDDRGIDVVREQIKNFAETRT-LFSkgyKLIVLDEADMMTTAAQSALRRVIEQ 164
                 999*******************99888898975.7999999999999999999986664.55423379999*************9888765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-05     0.012      26      72 ..      65     113 ..      55     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-05
       AAA_7  26 lelllknkk..pvllvGptGtGKtviikdllkkldkekylsltinfsaq 72 
                 +e+++++++  ++l++Gp GtGKt++i  + +++   +y   +++++a+
  CDO69757.1  65 IEKFIEKNRlpHLLFYGPPGTGKTSTILAVARRIYGADYRKQILELNAS 113
                 5666666554489****************99999999998888888775 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00042      0.24      28      58 ..      67      97 ..      53     137 .. 0.67
   2 ?    3.6   0.1     0.066        38     113     170 ..     132     186 ..     120     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00042
        TniB 28 eypkrkrmpnlllvGdsnnGKtmivekFarl 58
                ++ +++r p+ll++G++ +GKt+ +   ar+
  CDO69757.1 67 KFIEKNRLPHLLFYGPPGTGKTSTILAVARR 97
                556899****************987655543 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.066
        TniB 113 rllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealralr 170
                 r+l + + +++++DE + + ++   +q ++  ++ + + +++  i++  +++++ a++
  CDO69757.1 132 RTLFSKGYKLIVLDEADMMTTA---AQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQ 186
                 55666789*********99855...555555566666666666666666666666665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.1e-05     0.018      13     110 ..      84     174 ..      83     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-05
  Methyltransf_31  13 GtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      GtG+ +  la  +    +++G D+ ++ +el  +  ++ g+d v+ ++ ++ e  +l++ + + li+ +e+ + +++ +++l+++++  +++ +
       CDO69757.1  84 GTGKTSTILA-VA---RRIYGADYRKQILELNAS--DDRGIDVVREQIKNFAETRTLFS-KGYKLIVLDEADMMTTAAQSALRRVIEQYTKNVR 170
                      7777888888.33...35*************999..699**************887788.89*******************************9 PP

  Methyltransf_31 107 llie 110
                      ++i 
       CDO69757.1 171 FCII 174
                      9864 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.7     5e+03      10      30 ..      27      42 ..      25      71 .. 0.59
   2 !   14.6   0.0   3.4e-05      0.02       5      76 ..      81     152 ..      77     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.7
  Viral_helicase1 10 GKStlirkllrtsliltvnrp 30
                     GKSt+  ++++++     n p
       CDO69757.1 27 GKSTEHEDAYDNE-----NLP 42
                     8999888888773.....333 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.4e-05
  Viral_helicase1   5 GvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvdsflmalvkstkgkililDEylllha 76 
                      G pG GK++ i  ++r       +r+++  l+++     ++ +++++++ +    ++k+  +k+++lDE+ ++++
       CDO69757.1  81 GPPGTGKTSTILAVARR-IYGADYRKQILELNASDdrgIDVVREQIKNFAETRTLFSKG--YKLIVLDEADMMTT 152
                      78***************.55555666666666655666999999999999999998886..********988873 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     8e-05     0.046      10     116 ..      64     168 ..      59     187 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8e-05
    ATPase_2  10 eleeilerepneiyfiYGpegsGKtaLlkeiienledkdk..yviyyialreesiskldefieeeeekkklekal..giavpkaeleeilkeksklvfk 104
                  +e+ +e+++ + ++ YGp g GKt+ +  ++ +    d+  +++ ++a  ++ i+ ++e i++  e + l  +   +i++ +a +       ++ +++
  CDO69757.1  64 TIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGADYrkQILELNASDDRGIDVVREQIKNFAETRTLFSKGykLIVLDEADM------MTTAAQS 156
                 6999****99999******************9999554442144444555555555555555544444444443322333333333......2344444 PP

    ATPase_2 105 aielllekikkk 116
                 a+ +++e+ +k+
  CDO69757.1 157 ALRRVIEQYTKN 168
                 444444444443 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015     0.087     101     153 ..      48      98 ..      44     120 .. 0.86
   2 ?   -2.6   0.0       3.9   2.2e+03     234     267 ..     152     186 ..     147     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
       T2SSE 101 keltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkei 153
                 + +tldd++ +++ + +i+++++k   +   +l+ G+ g+GKt ++ a+   i
  CDO69757.1  48 RPVTLDDVVSHKDITSTIEKFIEKN--RLPHLLFYGPPGTGKTSTILAVARRI 98 
                 6789*********************..77899***********9988877666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
       T2SSE 234 nsaagaler.Leqlgaeveaaelkssilavvdivv 267
                  +a++al+r +eq +++v+   + +++++++  ++
  CDO69757.1 152 TAAQSALRRvIEQYTKNVRFCIICNYVNKIIPAIQ 186
                 56777777734555555777777777777776666 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014     0.082      59     152 ..      76     169 ..      58     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                 EEEEEESSTSTHHHHHHHHHHHSSSEEEEES....SSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEE CS
         MCM  59 nvllvgdpgtaKsqlLkyveklapravytsg....kgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisi 152
                 ++l+ g pgt+K+  + +v++ +  a y +     ++s   g+   vvr++ ++  + e+  l      ++++De d m+++ +sal  ++Eq t ++
  CDO69757.1  76 HLLFYGPPGTGKTSTILAVARRIYGADYRKQilelNASDDRGI--DVVREQIKN--FAETRTLFSKGYKLIVLDEADMMTTAAQSALRRVIEQYTKNV 169
                 899*********9888788766666666543111144444443..456665544..7899999999999************************88665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.17      42     136 ..      67     164 ..      53     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
   IstB_IS21  42 sfiekke..nivllGpsGvGKshlaialgveavraglsvlfvrve...dLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfevie 135
                 +fiek+    +++ Gp+G+GK+    a++++   a+++   + ++   d    + r++ ++ ++++       +l++lD+  + +   a+++ l +vie
  CDO69757.1  67 KFIEKNRlpHLLFYGPPGTGKTSTILAVARRIYGADYRKQILELNasdDRGIDVVREQIKNFAETRTLFSKGYKLIVLDEADMMTT--AAQSALRRVIE 163
                 56766643368999********9999999888888877555544310133344444443333333333334458999999877654..45555666666 PP

   IstB_IS21 136 k 136
                 +
  CDO69757.1 164 Q 164
                 4 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00029      0.17     159     211 ..     120     173 ..     103     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
                 HHHHHT......TTS-S-S-SEEEES-GGGT--T.TSHHHHHHHH---S-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
      SNF2_N 159 vlsreaelqkkrsvlkqvewkrvvlDEghtlkns.tskaaeavskLstsnrwil 211
                 v++++ + +++  +l ++  k +vlDE+ ++    +s ++ +++++  + r ++
  CDO69757.1 120 VVREQIKNFAETRTLFSKGYKLIVLDEADMMTTAaQSALRRVIEQYTKNVRFCI 173
                 5566666668899999****************9999*********999999996 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00074      0.43      24      47 ..      76     100 ..      57     129 .. 0.78
   2 ?   -0.8   0.0       1.4   8.1e+02     109     133 ..     141     165 ..     133     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00074
  Mg_chelatase  24 nlllvGppGsGKtmla.krlpsllp 47 
                   +ll++GppG+GKt  + +    +  
    CDO69757.1  76 HLLFYGPPGTGKTSTIlAVARRIYG 100
                   89**********8543033344555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledg 133
                   +++LDE+  +++ +  +LR+ +e+ 
    CDO69757.1 141 LIVLDEADMMTTAAQSALRRVIEQY 165
                   5799***************999975 PP

>> FliH  Flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00048      0.28       3     101 ..     124     221 ..     121     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00048
                 ..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-.-S-HHHHHHHHHHHHTTSCHHHS-EEEEE-HHHHHHHHHHHHHHHHHCT-EEEE- CS
        FliH   3 eqarlaalleelenslaeldeeledqlvqlaldiarkvikkel.svdpekilalvrealaklpvdekkitlrvnpdDlelvrehlgeelsargwrlvaD 100
                 +++++a+  + +++  + +  + +d++ + a ++ r vi++ + +v+  +i + v++++   +++++ ++ r +p  +  v++ l+++++a+g rl +D
  CDO69757.1 124 QIKNFAETRTLFSKGYKLIVLDEADMMTTAAQSALRRVIEQYTkNVRFCIICNYVNKII--PAIQSRCTRFRFSPLPMSEVEKRLDNVIQAEGVRLTED 220
                 555566666666667777777778899999999999***9655056678999*******..999**********************************9 PP

                 T CS
        FliH 101 s 101
                  
  CDO69757.1 221 G 221
                 5 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00045      0.26       3      23 ..      78     100 ..      76     175 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00045
      AAA_28   3 vitGgestGKTtlleaLaar..g 23 
                  + G+++tGKT+++ a a+r  g
  CDO69757.1  78 LFYGPPGTGKTSTILAVARRiyG 100
                 589*************9966442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2290.33
//
Query:       CDO69758.1  [L=159]
Description: hypothetical protein BN946_scf184766.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-34  116.4   0.5    3.4e-34  116.4   0.5    1.7  2  ubiquitin      Ubiquitin family
    3.4e-26   91.1   1.9    3.4e-26   91.1   1.9    1.9  2  Ribosomal_S27  Ribosomal protein S27a
    3.4e-16   58.8   0.6    7.9e-16   57.7   0.6    1.6  1  Rad60-SLD      Ubiquitin-2 like Rad60 SUMO-like
    2.7e-05   24.5   0.3    0.00014   22.2   0.1    2.2  2  Ubiquitin_2    Ubiquitin-like domain
    0.00031   20.8   0.6     0.0007   19.7   0.6    1.6  1  Rad60-SLD_2    Ubiquitin-2 like Rad60 SUMO-like
     0.0073   16.2   0.0      0.011   15.7   0.0    1.3  1  TBK1_ULD       TANK binding kinase 1 ubiquitin-like domain
     0.0074   16.6   1.1      0.012   15.9   0.1    1.8  2  Ubiquitin_5    Ubiquitin-like domain
      0.008   16.7   0.8      0.011   16.3   0.8    1.2  1  DUF2407        DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
      0.019   15.0   1.1        5.9    7.0   0.2    2.5  2  Ubiquitin_4    Ubiquitin-like domain
      0.025   14.1   0.2      0.034   13.6   0.2    1.2  1  DUF4925        Domain of unknown function (DUF4925)
      0.029   14.6   0.6       0.05   13.8   0.6    1.4  1  IBR            IBR domain, a half RING-finger domain
       0.13   12.9   0.2       0.27   11.9   0.2    1.6  1  DUF971         Protein of unknown function (DUF971)


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.5   2.3e-37   3.4e-34       1      72 []       3      74 ..       3      74 .. 0.99
   2 ?   -2.0   0.0       2.1   3.2e+03      54      62 ..     103     111 ..      89     120 .. 0.62

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 2.3e-37
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K+ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CDO69758.1  3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                 HGGHTTSTT CS
   ubiquitin  54 leeygiqdg 62 
                 l++y+++++
  CDO69758.1 103 LKYYKVESD 111
                 344444444 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3         3   4.4e+03      11      19 ..      89      97 ..      83      98 .. 0.76
   2 !   91.1   1.9   2.3e-29   3.4e-26       1      45 []     102     147 ..     102     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3
                   SSEEESS-B CS
  Ribosomal_S27 11 gkverlrke 19
                   +k++++rk+
     CDO69758.1 89 KKIKHKRKK 97
                   699999985 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 2.3e-29
                    SSSSCCESSSSSEEESS-B-SS-.S-TTSBEEECTTEEEESSTTTE CS
  Ribosomal_S27   1 vlkyYkvddsgkverlrkeCpre.CGaGvfMAehkdRkyCGkCglT 45 
                    +lkyYkv+++gk++rlr+eCp++ CGaG+fMA hkdR+yCGkCglT
     CDO69758.1 102 ILKYYKVESDGKIKRLRRECPSAeCGAGIFMAFHKDRQYCGKCGLT 147
                    69******************************************98 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.6   5.3e-19   7.9e-16       1      72 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 5.3e-19
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++ + ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CDO69758.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   9.5e-08   0.00014      16      80 ..      13      69 ..       2      70 .. 0.86
   2 ?   -2.2   0.0       4.1   6.1e+03      65      74 ..     101     110 ..      83     116 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.5e-08
                 EEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 16 serrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CDO69758.1 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 55668899************************99........5667899*********9999995 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.1
                  SBCCCCT--T CS
  Ubiquitin_2  65 alLgsYgvkd 74 
                  + L++Y+v++
   CDO69758.1 101 SILKYYKVES 110
                  4566776665 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   4.7e-07    0.0007      13     105 ..      11      90 ..       2     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.7e-07
                  -EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX.XXXXXX CS
  Rad60-SLD_2  13 sDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk.akkakk 105
                  + +  ++ ++++t++++k+k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r     kk++kk  + +kk
   CDO69758.1  11 K-TITLEVESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLRLRGGAKKRKKKtYNTPKK 90 
                  5.5556677777888888877.....4555533..34559*****************54433......579***99877666666654444444 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.2e-06     0.011      19      53 ..      17      51 ..       4      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.2e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CDO69758.1 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51
                67899***************************973 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   8.3e-06     0.012      34      93 ..      13      73 ..       5      78 .. 0.82
   2 ?    1.0   0.5      0.38   5.7e+02      14      54 ..      65     105 ..      59     115 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.3e-06
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93
                  +le++ + t +++ +ki ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   CDO69758.1 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 73
                 55666666678889999999999999***********************999875467765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.38
  Ubiquitin_5  14 AtlellLprdkrketkeekkkllet..kLdvtgkelvskiaee 54 
                   tl+l+L  +     k++kkk+ +t  k++ + k++   i + 
   CDO69758.1  65 STLHLVLRLRGGA--KKRKKKTYNTpkKIKHKRKKVKMSILKY 105
                  5677766654443..3345666666334444455555555555 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.8   7.5e-06     0.011      14      72 ..      13      84 ..       6     113 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.5e-06
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpees.................v 72
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   ++e++                 +
  CDO69758.1 13 ITLEVE--SSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTlhlvlrlrggakkrkkkT 84
                566666..6789999999999987..67777789**************9865555444688888776554433210 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0039       5.9       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    6.3   0.0    0.0064       9.6      58      86 ..      43      70 ..      39      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0039
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k+ i+ 
   CDO69758.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32
                 7899*************************997 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0064
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CDO69758.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789************976 PP

>> DUF4925  Domain of unknown function (DUF4925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   2.3e-05     0.034      49     125 ..      39     114 ..       3     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
     DUF4925  49 eedeYtFsGtsvteagatvkYsGsitkkalkLdlnvtmanakelaktYklselvkgkkkivdtsggeytwketdnev 125
                 +++  +F+G+++  + +   Y+   ++ +l+L l ++ + +k   ktY+ ++ +k k+k+v++s  +y   e+d+++
  CDO69758.1  39 DQQRLIFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGGAKKRKKKTYNTPKKIKHKRKKVKMSILKYYKVESDGKI 114
                 77889999*99987777788874.477899*******************************************9987 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.6   3.3e-05      0.05      12      45 ..     108     145 ..      90     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
         IBR  12 lesdpn....lkwCprpdCeaiieksegcksvtCskCg 45 
                 +esd +    ++ Cp+++C+a i    ++++  C kCg
  CDO69758.1 108 VESDGKikrlRRECPSAECGAGIFMAFHKDRQYCGKCG 145
                 555555556699********999777775554599998 PP

>> DUF971  Protein of unknown function (DUF971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00018      0.27      18      37 ..     108     127 ..      89     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      DUF971  18 kesslpaelLRdacpcaecr 37 
                  es+ + + LR++cp+aec 
  CDO69758.1 108 VESDGKIKRLRRECPSAECG 127
                 556778899**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1129.39
//
Query:       CDO69759.1  [L=370]
Description: hypothetical protein BN946_scf184766.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   14.3   0.2        8.7    6.9   0.0    4.3  6  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0   0.00048       8.7       3      37 ..      49      84 ..      48      90 .. 0.78
   2 ?    3.4   0.0    0.0061   1.1e+02       1      33 [.      70     105 ..      70     114 .. 0.68
   3 ?    0.5   0.0     0.049   8.9e+02       2      33 ..      96     135 ..      95     138 .. 0.58
   4 ?   -2.5   0.0      0.45     8e+03      18      32 ..     244     258 ..     240     261 .. 0.65
   5 ?   -3.4   0.0      0.85   1.5e+04      23      28 ..     315     320 ..     310     324 .. 0.64
   6 ?   -1.6   0.0      0.24   4.3e+03      22      30 ..     343     351 ..     338     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00048
                --EEE--SS---E-S-HH....H-TT--EEE-.-S---- CS
       LRR_4  3 LevLdLsnNqltdiplle....klpnLkeLdLsgNnlit 37
                L++L L++ ++t   +l+     l++L++L++  N ++t
  CDO69759.1 49 LQSLQLRG-RMTA--PLNsavaALTQLTSLTIYANCFLT 84
                99999999.9996..65556646*********7785665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0061
                 SS--EEE--.SS---.E-S-HH...H-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLs.nNqlt.diplle...klpnLkeLdLsgN 33 
                 ++L++L +  n+ lt +   l+    +p L++L+++  
  CDO69759.1  70 TQLTSLTIYaNCFLTpE--TLAavaTFPRLRSLSVHAS 105
                 57888888888888833..4444646999999999433 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.049
                 S--EEE--.SS---E-S-...HH.....H-TT--EEE-.-S CS
       LRR_4   2 nLevLdLs.nNqltdipl...le.....klpnLkeLdLsgN 33 
                 +L++L+ + +  ++d ++   l+      +p L+eL +  N
  CDO69759.1  96 RLRSLSVHaS-SIRDSDFataLArssapCFPTLQELEIRTN 135
                 6666666655.677766654422455544777888887334 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.45
                 -HHH.-TT--EEE-.- CS
       LRR_4  18 llek.lpnLkeLdLsg 32 
                  l+k  p L +L+L g
  CDO69759.1 244 ELGKwWPYLDHLNL-G 258
                 55555667888888.4 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 0.85
                 TT--EE CS
       LRR_4  23 pnLkeL 28 
                 +nL++L
  CDO69759.1 315 TNLRSL 320
                 455555 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.24
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                 +p L++Ld+
  CDO69759.1 343 FPLLTTLDC 351
                 677888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2465.83
//
Query:       CDO69760.1  [L=453]
Description: hypothetical protein BN946_scf184766.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3089.23
//
Query:       CDO69761.1  [L=957]
Description: hypothetical protein BN946_scf184766.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-112  375.6   5.9   3.6e-112  375.6   5.9    2.1  2  MMS19_C   RNAPII transcription regulator C-terminal
    1.3e-54  185.6  10.6      7e-49  166.7   0.1    5.0  5  MMS19_N   Dos2-interacting transcription regulator of RNA-Pol
    2.9e-07   30.8  11.8       0.19   12.2   0.1    6.5  6  HEAT_2    HEAT repeats
    3.9e-07   30.4  10.0    0.00025   21.5   0.1    5.9  7  HEAT_EZ   HEAT-like repeat
     0.0019   18.3   6.2         16    6.1   0.1    6.2  6  HEAT      HEAT repeat
  ------ inclusion threshold ------
      0.013   16.1   0.2        5.1    7.8   0.0    4.0  4  Ipi1_N    Rix1 complex component involved in 60S ribosome mat
      0.025   13.8   0.1       0.15   11.3   0.0    2.4  2  DUF4704   Domain of unknown function (DUF4704)
       0.15   12.2   0.0        2.7    8.1   0.0    2.7  2  Erf4      Golgin subfamily A member 7/ERF4 family


Domain annotation for each model (and alignments):
>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.4     9e+02     290     360 ..     238     308 ..     215     354 .. 0.47
   2 !  375.6   5.9  1.6e-115  3.6e-112       1     423 []     457     888 ..     457     888 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.4
     MMS19_C 290 edaelgqlvakafgvlvsddev....vlskknhanirlLykQrfFstvlpklvegfkssdsetkenyLvALshll 360
                 +d  +++++ k  ++l+++  +       ++  a i  L+k   ++++++ l e   +s+ ++   +L+A+ +  
  CDO69761.1 238 TDNVTQEKALKTTQILIQT--IysasEAERNDSAEIEGLAKE-ACEECIQILREPE-KSQAQHAIKVLCAFMSTT 308
                 3333444444444444433..222222233333333333332.3344443333332.224444444444444444 PP

  == domain 2  score: 375.6 bits;  conditional E-value: 1.6e-115
     MMS19_C   1 pallatLpdsaseasasa....yervLeaLaelssekqlfetlvirllnkldlvlksnes...........saayahailstllkllekkqtdlekeel 84 
                 p l+ +Lpd a+ ++a+a    y+r+L+ L++l+++++lfetlv+rl +kldlv+ +++s           saayah++l+t++++l++k  d+  +++
  CDO69761.1 457 PLLFTSLPDHAPPREAEAerirYWRTLAYLKKLCTQPDLFETLVVRLSTKLDLVCVPSASvgdsapvdlepSAAYAHSLLKTIADVLSAKI-DV-GHKD 553
                 789************999***********************************************************************98.77.8999 PP

     MMS19_C  85 lnsyydrivprlltlvvsaastss...siltddrllevlgriinlivrslssskqqevleevvalfltgdaskkfeplsesasesqkqli..ilftail 178
                 +++y+dr+vprl++l++++a+  +    ++td rll+v+++ii+li+++l++ +q++++++++a++l+ + s+  e             i  +   +  
  CDO69761.1 554 VTKYIDRLVPRLYNLFIYSALLAEerpVVATDARLLAVAAQIITLITQTLTAGRQEAFVKALFAAYLEAQVSQLAEG------------IqkVAADKKF 640
                 9***************99998777899********************************************992222............123678999* PP

     MMS19_C 179 aalrkevklpdlsellnellellaseaespflrlaylrllallvNKflkdedlselldellesieeslie..aedsqerkaaleiliwitKALvlRghp 275
                 a+l   v++pd  ++ln+lle+++++ae+ ++r a+++ ++ +vN+++  e+l+++l+   +++++s+i+  +   + r++a+ +++w++KAL+lR+hp
  CDO69761.1 641 APLEVAVPVPDETAFLNRLLEWTVTHAENALQREAVVHTISAVVNRHA--ENLESFLSTNVTQFWNSQISdaSVFADARRNAIATVTWLSKALLLRSHP 737
                 ************************************************..********************999999*********************** PP

     MMS19_C 276 latelldkLlelLsedaelgqlvakafgvlvsddevvlskknhanirlLykQrfFstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLpt 374
                  a++ +++L+el++ d+++++++a+a+g +  +d+v l+k+nha+i++Ly Q++++ vlp+++eg+kss+s +++++LvAL+ l+k+vPks++ +++++
  CDO69761.1 738 GAMTNVERLFELFD-DDSVSWDAARAVGRIPGPDKV-LTKRNHAVIKILYAQKYCNVVLPRIIEGAKSSQSARQNAFLVALAALIKSVPKSTYAHQMSS 834
                 **************.*********************.************************************************************** PP

     MMS19_C 375 LlPlLlqaLdlpdaevkastLetlksile.....espslvsehlssLvprLLkl 423
                 LlPlLl++Ldlpd+e++as+++tl+++++     e++sl++eh+ssLv+++Lk+
  CDO69761.1 835 LLPLLLRGLDLPDNEIRASVIDTLQAAATssgkeENNSLLAEHTSSLVSTMLKN 888
                 *****************************8887777****************95 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.1   3.1e-52     7e-49       1     162 [.      39     200 ..      39     201 .. 0.99
   2 !   17.9   0.0     8e-07    0.0018     224     261 .]     199     236 ..     196     236 .. 0.94
   3 ?   -2.7   0.0       1.6   3.5e+03      13      52 ..     291     310 ..     273     356 .. 0.53
   4 ?    1.6   0.3     0.075   1.7e+02      59     122 ..     626     696 ..     581     731 .. 0.65
   5 ?    4.1   0.3     0.013        29      13     110 ..     805     911 ..     799     939 .. 0.68

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 3.1e-52
     MMS19_N   1 veaLgeyLtseddkvRakavslLaevlsrlpkkklseeevevLvqFflsrledfavlkealkgllaLlrlkkfsaeeavevlralfeevhvqslaqadR 99 
                 v++LgeyLtse+d+ R+k+v++L+ vl+++p+++l++++v+vLv F++ +led++++ +alkgl +L++l +f++ +avev++a+f +v+++ l+q++R
  CDO69761.1  39 VKSLGEYLTSEEDDLRTKGVEFLSLVLAQCPPERLNRQAVRVLVSFYCGKLEDTETIIPALKGLVTLTKLPAFTSPDAVEVVKAIFAHVKMKVLVQSQR 137
                 899****************************99****************************************************************** PP

     MMS19_N 100 klvyelldallekhrealkelgedflegfvelvdgEkDPrnLllvfellkvllrefdlsalae 162
                 ++v++++d+l++++realk+++++f+ g+++l++gEkDPrnLll+f + +vll efd+++++e
  CDO69761.1 138 FMVFSIIDNLVARYREALKDMSDEFIRGYISLAEGEKDPRNLLLAFAIDRVLLIEFDVQKHIE 200
                 **********************************************************99987 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8e-07
     MMS19_N 224 akldaLqtlaacveaygaeavaehlralwsalkkeiln 261
                 + +d+L+tl  c++ yg++  +e +r+lw+ lk ei++
  CDO69761.1 199 IEKDTLETLDICLPVYGPAIARESARKLWNCLKLEIFQ 236
                 679*********************************86 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.6
     MMS19_N  13 dkvRakavslLaevlsrlpkkklseeevevLvqFflsrle 52 
                 +                    +  +++++vL++F+ +  +
  CDO69761.1 291 K--------------------SQAQHAIKVLCAFMSTTPS 310
                 2....................3334444444444433322 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.075
     MMS19_N  59 ealkgllaLlrlkkfsaee.......avevlralfeevhvqslaqadRklvyelldallekhrealkelge 122
                 ++++g+++++  kkf++ e        ++ l++l+e +   +  + +R++v + ++a++++h e+l++  +
  CDO69761.1 626 QLAEGIQKVAADKKFAPLEvavpvpdETAFLNRLLEWTVTHAENALQREAVVHTISAVVNRHAENLESFLS 696
                 55666666665555544443333322444666777777777777777777777777777777777743222 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.013
     MMS19_N  13 dkvRakavsl.LaevlsrlpkkklseeevevLvqFflsrle..dfavlkealkgllaLl......rlkkfsaeeavevlralfeevh.vqslaqadRkl 101
                 ++ R++a ++ La++++++pk ++ ++++++L+  +l  l+  d ++ +++++ l+a +      + +++ ae++ +++++++++    +  + ++R +
  CDO69761.1 805 QSARQNAFLVaLAALIKSVPK-STYAHQMSSLLPLLLRGLDlpDNEIRASVIDTLQAAAtssgkeENNSLLAEHTSSLVSTMLKNSLaSNMPSVRVRVS 902
                 455555554339999999998.89999999999999999999999999999999999884444333355556667777777776544133334566667 PP

     MMS19_N 102 vyelldall 110
                 ++++l +l 
  CDO69761.1 903 ALRFLGTLP 911
                 777777665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.046     1e+02       3      69 ..      41     122 ..      38     127 .. 0.59
   2 !    5.6   0.1    0.0095        21      31      77 ..     277     333 ..     265     344 .. 0.73
   3 ?   -1.6   0.0       1.7   3.7e+03      35      58 ..     658     683 ..     651     696 .. 0.60
   4 ?    4.1   0.1     0.027        61      13      63 ..     713     771 ..     704     784 .. 0.74
   5 !    7.1   0.1    0.0031         7      30      67 ..     833     874 ..     808     889 .. 0.75
   6 !   12.2   0.1   8.3e-05      0.19       9      54 ..     892     948 ..     883     951 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.046
      HEAT_2   3 aLlqalendpdpevrraairaLg........rignpealpaLvell..ededpavRraaaeaLg......aigdpealpaLke 69 
                  L ++l +++++++r + ++ L         +  n++a++ Lv++   + ed+++   a + L+      a+ +p+a+++ k+
  CDO69761.1  41 SLGEYL-TSEEDDLRTKGVEFLSlvlaqcppERLNRQAVRVLVSFYcgKLEDTETIIPALKGLVtltklpAFTSPDAVEVVKA 122
                 566777.6777777777777777666544444444467777777555556777777777776663333333346666666655 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0095
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai..........gdpealpaLkelldddddd 77 
                 ea + ++++l+ ++    ++a++ L a+           + +alp+L +l++d+d+ 
  CDO69761.1 277 EACEECIQILREPEKSQAQHAIKVLCAFmsttpsvaryTLARALPHLVKLFLDPDEL 333
                 678888899999999999999999965533332222214688999999999998875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.7
      HEAT_2  35 aLvell.ed.edpavRraaaeaLgai 58 
                  L+e+  ++ e++  R+a++++++a+
  CDO69761.1 658 RLLEWTvTHaENALQREAVVHTISAV 683
                 45554434436666777777776665 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.027
      HEAT_2  13 dpevrraairaLg.......rignpealpaLvelled.edpavRraaaeaLgaigdpea 63 
                 + + rr+ai +            +p a+  + +l e  +d  v + aa+a g+i  p+ 
  CDO69761.1 713 FADARRNAIATVTwlskallLRSHPGAMTNVERLFELfDDDSVSWDAARAVGRIPGPDK 771
                 56778888888876666655556778877777777544788899999999999977654 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0031
      HEAT_2  30 pealpaLvellededpavRraaaeaLgai....gdpealpaL 67 
                  ++lp+L++ l+ +d ++R+ ++++L a     g +e+ ++L
  CDO69761.1 833 SSLLPLLLRGLDLPDNEIRASVIDTLQAAatssGKEENNSLL 874
                 3789**********************8662222345555555 PP

  == domain 6  score: 12.2 bits;  conditional E-value: 8.3e-05
      HEAT_2   9 endpdpevrraairaLg.........rignp...ealpaLvellededpavRraaaea 54 
                 +n p+  vr  a+r Lg          ++ p   ++++ L ++l+d++ avR++a+ea
  CDO69761.1 892 SNMPSVRVRVSALRFLGtlpdvirydVLH-PqkaTVIRELGKALDDPKKAVRKEAVEA 948
                 5678999**********777777553223.245567********************98 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   6.8e+03      28      51 ..      37      60 ..      30      64 .. 0.80
   2 ?   -3.1   0.0       5.7   1.3e+04      14      32 ..      65      84 ..      51      92 .. 0.60
   3 ?    3.3   0.1     0.054   1.2e+02      14      52 ..     308     343 ..     295     346 .. 0.58
   4 ?   -3.3   0.0       6.3   1.4e+04      41      54 ..     669     682 ..     668     683 .. 0.80
   5 ?    0.1   0.0      0.55   1.2e+03      36      55 .]     749     766 ..     736     766 .. 0.83
   6 !    6.1   0.2    0.0073        16       4      53 ..     808     859 ..     805     860 .. 0.88
   7 !   21.5   0.1   1.1e-07   0.00025       2      51 ..     898     948 ..     897     948 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
     HEAT_EZ 28 eilpaLlalLnddsdeVRaaAaga 51
                ++++ L+  L++++d+ R++ +  
  CDO69761.1 37 DLVKSLGEYLTSEEDDLRTKGVEF 60
                688889999999999999986655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.7
     HEAT_EZ 14 laggepellqp.lvpeilpa 32
                la++ pe l+  +v +++ +
  CDO69761.1 65 LAQCPPERLNRqAVRVLVSF 84
                55666666665355555555 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.054
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnddsdeV.RaaAagaL 52 
                  +++++ +l+ +    lp L++l  d++ +  Ra +++ L
  CDO69761.1 308 TPSVARYTLARA----LPHLVKLFLDPDELPnRAPTLRLL 343
                 444555556655....555555555555455787666666 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.3
     HEAT_EZ  41 sdeVRaaAagaLgn 54 
                 +++ R+a+++++++
  CDO69761.1 669 NALQREAVVHTISA 682
                 56789999999986 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.55
     HEAT_EZ  36 lLnddsdeVRaaAagaLgnl 55 
                 l   d+d+V + Aa+a g++
  CDO69761.1 749 LF--DDDSVSWDAARAVGRI 766
                 44..99**********9997 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.0073
     HEAT_EZ   4 RraAaw.aLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 R +A + aL++ + ++ + + + + + +lp+Ll++L  ++ e+Ra ++ +L 
  CDO69761.1 808 RQNAFLvALAAlIKSVPKSTYAHQMSSLLPLLLRGLDLPDNEIRASVIDTLQ 859
                 67777779999999999999999*************99*******9998885 PP

  == domain 7  score: 21.5 bits;  conditional E-value: 1.1e-07
     HEAT_EZ   2 rvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAaga 51 
                 rvR +A++ LG+ + + + + l+p+   ++++L+++L d++++VR+ A+ a
  CDO69761.1 898 RVRVSALRFLGTlPDVIRYDVLHPQKATVIRELGKALDDPKKAVRKEAVEA 948
                 8***********988889999************************999876 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.2   4.5e+02       9      29 ..     304     325 ..     298     331 .. 0.80
   2 ?    2.7   0.0     0.089     2e+02       2      28 ..     656     684 ..     655     687 .. 0.76
   3 ?   -2.5   0.0         4     9e+03       1      22 [.     793     814 ..     793     822 .. 0.62
   4 !    6.1   0.1    0.0071        16       1      26 [.     835     860 ..     835     864 .. 0.90
   5 ?    2.7   0.0     0.087     2e+02       9      27 ..     890     910 ..     881     910 .. 0.73
   6 ?    2.2   0.0      0.13   2.8e+02       7      23 ..     932     948 ..     926     948 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
                 HT-SSHHH.HHHHHHHHHHHHH CS
        HEAT   9 lsDpspeV.ReaAakaLgalae 29 
                  +++ p+V R++ a+aL +l++
  CDO69761.1 304 FMSTTPSVaRYTLARALPHLVK 325
                 5788999999999999999887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.089
                 HHHHHHH.H.T-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkl.l.sDpspeVReaAakaLgala 28 
                 l+ ll++   + +++ +Rea++ ++ a++
  CDO69761.1 656 LNRLLEWtVtHAENALQREAVVHTISAVV 684
                 6667777443459999********99876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4
                 HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAak 22 
                 +lP +++  +++ +    a + 
  CDO69761.1 793 VLPRIIEGAKSSQSARQNAFLV 814
                 5899999887766664444444 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0071
                 HHHHHHHHHT-.SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLga 26 
                 llPlll+ l D p+ e+R++++ +L a
  CDO69761.1 835 LLPLLLRGL-DlPDNEIRASVIDTLQA 860
                 89******9.77***********9987 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.087
                 HT-..SSHHHHHHHHHHHHHH CS
        HEAT   9 lsD..pspeVReaAakaLgal 27 
                 l +  ps +VR +A++ Lg+l
  CDO69761.1 890 LASnmPSVRVRVSALRFLGTL 910
                 44457999*********9986 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.13
                 HHHT-SSHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAaka 23 
                 k+l Dp   VR+ A++a
  CDO69761.1 932 KALDDPKKAVRKEAVEA 948
                 789***********987 PP

>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.069   1.5e+02      23      56 ..      51      84 ..      46      91 .. 0.87
   2 ?    7.8   0.0    0.0023       5.1      21      64 ..     195     239 ..     194     305 .. 0.68
   3 ?   -1.6   0.1       1.9   4.2e+03      32      56 ..     659     683 ..     657     727 .. 0.65
   4 ?   -2.4   0.0       3.3   7.5e+03      24      43 ..     898     917 ..     895     940 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.069
      Ipi1_N 23 pdIredslkfLdllLevapeelvssawvktLnnf 56
                 d r+  ++fL+l+L  +p e ++ + v++L +f
  CDO69761.1 51 DDLRTKGVEFLSLVLAQCPPERLNRQAVRVLVSF 84
                5789999**************9998899888777 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0023
      Ipi1_N  21 ispdIredslkfLdllLevapeelvssawvktLnnf.lallgwsk 64 
                 ++++I +d+l++Ld++L v++ ++ +++  k+ n++ l+++  ++
  CDO69761.1 195 VQKHIEKDTLETLDICLPVYGPAIARESARKLWNCLkLEIFQPTD 239
                 6889******************98888866666655233333332 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.9
      Ipi1_N  32 fLdllLevapeelvssawvktLnnf 56 
                 +L++ + +a+++l ++a v+t+  +
  CDO69761.1 659 LLEWTVTHAENALQREAVVHTISAV 683
                 6888888888886666665444333 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.3
      Ipi1_N  24 dIredslkfLdllLevapee 43 
                 ++r ++l+fL  l +v+  +
  CDO69761.1 898 RVRVSALRFLGTLPDVIRYD 917
                 7999******9987777665 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.6e-05      0.15      56     112 ..      30      85 ..       3     102 .. 0.77
   2 ?   -1.8   0.1      0.63   1.4e+03      39      42 ..     844     847 ..     774     903 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
     DUF4704  56 slcatllsliaelleasstnqqqlvqtkGflvlaflLqkvspkhLtrevleallsla 112
                 +  atll+l+ +l  +  t++++ ++tkG++ l+ +L + +p+ L+r+ + +l+s+ 
  CDO69761.1  30 QGKATLLDLVKSL-GEYLTSEEDDLRTKGVEFLSLVLAQCPPERLNRQAVRVLVSFY 85 
                 346899***9665.56677788888****************************9985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.63
     DUF4704  39 dlpe 42 
                 dlp+
  CDO69761.1 844 DLPD 847
                 3333 PP

>> Erf4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0012       2.7      26      67 ..     404     442 ..     359     451 .. 0.89
   2 ?    0.1   0.0      0.36   8.1e+02      56     113 ..     594     656 ..     586     657 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
        Erf4  26 sgyiseeefeeiinkiNeilaeafspysvrnildnvlglltl 67 
                  g++s ee+  i++++Neil++ ++    ++i d vl+ll+ 
  CDO69761.1 404 TGLLSDEELGFIVHNVNEILQKDEDE---SEITDAVLELLST 442
                 4679*********************7...8888999988875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.36
        Erf4  56 nildnvlglltly....lwslvlkthykkklkklekyieelNeel.fkerglkiisprrsgyl 113
                 +i+  + + lt++    +++ ++ ++ + ++ +l + i+++  +  f++ ++++  p ++++l
  CDO69761.1 594 QIITLITQTLTAGrqeaFVKALFAAYLEAQVSQLAEGIQKVAADKkFAPLEVAVPVPDETAFL 656
                 6777778888888555556666669999999*********99888899999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 6092.79
//
Query:       CDO69762.1  [L=134]
Description: hypothetical protein BN946_scf184766.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1062.36
//
Query:       CDO69763.1  [L=531]
Description: hypothetical protein BN946_scf184766.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-37  129.3   0.0      3e-37  128.7   0.0    1.3  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
  ------ inclusion threshold ------
      0.018   14.1   0.0      0.031   13.3   0.0    1.3  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.024   15.3   0.0      0.097   13.4   0.0    2.0  2  Methyltransf_12  Methyltransferase domain
      0.079   13.7   0.0       0.41   11.4   0.0    2.2  3  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.0   6.6e-41     3e-37       2     253 ..     164     431 ..     163     437 .. 0.78

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 6.6e-41
  Methyltransf_28   2 laiwlleewqalgrpskklrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQknrLkekakevkkestvkslgvkveWlee 95 
                      la+ l++e+     p +++ ++E+G+G+GtL+ dvL++l++  p++ye+++y ++E+S++l++ Q+++L+++++ v+   ++ks+     W  +
       CDO69763.1 164 LARCLVSEYLLKFFPYEDFVIYEIGAGNGTLALDVLDYLQEDYPDVYERTRYNIIEISENLANLQRQKLQSAHPCVT--VHNKSIFR---WDVR 252
                      78889999988889999******************************************************987775..88889988...9554 PP

  Methyltransf_28  96 lkeipeetgfilanEffDaLPihqfertedgwrellveltpe..........kkakek..........efrltl.spsetdplsevlpklskrl 168
                          p  +++++a E++D+++++ ++++ ++  e + +l                  k           +r  l +p + ++l ++ + ++   
       CDO69763.1 253 E---P-APCYFVAMEVIDNFAHDMIRYDLRT-LEPYQGLVTVdakgnfstyyT----KvvdplissflGLRRYLnHPPPIPRLLKLSSTFR--- 334
                      4...4.9*******************99999.555555553222244444441....0333344433322222224444433333333333... PP

  Methyltransf_28 169 ka........leegsrieispeaeallediaerlakegGaaLiiDYge.ssse..pngtL.rairkhklv...dpleepGevDltadvDFtala 247
                       +         + +   +i++++  ll+++ + +++  +++L+ D+   ++++  +n+++ +  ++  +v    +l+++G++D+++++DF+ l 
       CDO69763.1 335 -TfytnlpfaPNLSPPEFIPTRLLTLLRTLRRHFPR--HRLLLSDFSSlPDTIqgVNAPVvQTRYQNTTVpctTLLVKQGYFDIFFPTDFEKLC 425
                      .2444467666678889*******************..************999**9***986666666667977******************** PP

  Methyltransf_28 248 eaaeea 253
                       ++e++
       CDO69763.1 426 DMYEHI 431
                      *99765 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     7e-06     0.031      30      92 ..     180     253 ..     164     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7e-06
                 TTSEEEEES-TTTCCHHHHHCC-..........SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHHH CS
      RrnaAD  30 ekltvleigpGkGilTeeLakra..........kqvvvlElderLakllqkkls.kdeklkvvhqDflkfetpe 92 
                 e+  ++eig+G G l   +++++            + ++E+ e+La+l ++kl+  ++ ++v ++ +  +++ e
  CDO69763.1 180 EDFVIYEIGAGNGTLALDVLDYLqedypdvyerTRYNIIEISENLANLQRQKLQsAHPCVTVHNKSIFRWDVRE 253
                 8889******************988777666666799*****************6777799999******9876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.097       2      50 ..     186     238 ..     185     269 .. 0.87
   2 ?   -2.5   0.0         2   8.8e+03      10      30 ..     359     379 ..     357     401 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
  Methyltransf_12   2 eiGcGtGsllrallekl........pdieytgvDispsaiedakeklakrennnnnn 50 
                      eiG+G+G+l+  +l++l        ++++y  ++is++  +  ++kl++ ++    +
       CDO69763.1 186 EIGAGNGTLALDVLDYLqedypdvyERTRYNIIEISENLANLQRQKLQSAHP----C 238
                      9***************************************888888888775....3 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
  Methyltransf_12  10 llralleklpdieytgvDisp 30 
                      llr l++++p+ +++ +D+s+
       CDO69763.1 359 LLRTLRRHFPRHRLLLSDFSS 379
                      788999999999999999996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   6.4e+03      52      84 ..      50      83 ..       9      87 .. 0.61
   2 ?   11.4   0.0   9.2e-05      0.41       1      62 [.     184     253 ..     184     281 .. 0.77
   3 ?   -2.8   0.0       2.4   1.1e+04      13      31 ..     361     379 ..     358     417 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
                     ESBCCGBSSSTT.TEEEEEEESTGGG.SSHHHHHH CS
  Methyltransf_25 52 qgdaedlpfedg.sfDlvvssgalhh.lsdedlek 84
                     q +++d p +++  +  v++ + l+h  +++++ k
       CDO69763.1 50 QYSFTDAPDPEHvNYKRVTA-NDLEHeREPPRRVK 83
                     44556666544446777777.46666555555555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.2e-05
                      EEEET-TTSHHHHHHHCTS........TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSST CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl........gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfed 62 
                      + ++G+G+G+l+l++++ l        ++ ++  ++ise++ +  r++++++++ v+++++++ +++  +
       CDO69763.1 184 IYEIGAGNGTLALDVLDYLqedypdvyERTRYNIIEISENLANLQRQKLQSAHPCVTVHNKSIFRWDVRE 253
                      679*********99999855444433348999****************************9998887644 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.4
                      HHHHCTSTSSEEEEEESSH CS
  Methyltransf_25  13 lalakrlgkakvtgvDise 31 
                      + l +++++++++  D+s+
       CDO69763.1 361 RTLRRHFPRHRLLLSDFSS 379
                      4555555556666666652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3587.83
//
Query:       CDO69764.1  [L=102]
Description: hypothetical protein BN946_scf184766.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   72.8   6.6    3.3e-20   72.6   6.6    1.0  1  Tmemb_14  Transmembrane proteins 14C
  ------ inclusion threshold ------
      0.042   14.2   1.3       0.16   12.3   1.3    2.0  1  Aim19     Altered inheritance of mitochondria protein 19
       0.26   11.0   0.4       0.26   11.0   0.4    2.5  3  DUF3188   Protein of unknown function (DUF3188)


Domain annotation for each model (and alignments):
>> Tmemb_14  Transmembrane proteins 14C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   6.6   5.6e-24   3.3e-20       2      92 .]       5      93 ..       4      93 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 5.6e-24
    Tmemb_14  2 laiaygallavGGilgYlkagSvpSLiaGlllGallllagyllsknkka.kelslvislvlllvmgkrllktrkfmpaglvavlsalmllfy 92
                +a+++g+l++vGGi g+++++S+pSL+aG+++Gal+l+++  l+k   +  e +l++s++lll++++r+  t+ ++pa+l+ v+sa+++++y
  CDO69764.1  5 PAFVMGTLCIVGGITGFARTRSIPSLVAGVGVGALYLWSADSLRKGTANgLEAALGASALLLLSSAPRA--TKGPVPAVLT-VTSAASAYYY 93
                79*******************************************99999*****************97..6779******.9***999998 PP

>> Aim19  Altered inheritance of mitochondria protein 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   2.6e-05      0.16      80     114 ..      68      97 ..       1      98 [. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
       Aim19  80 vngkksikslrrgkvvPlaLsalalanavlyGkrf 114
                   + ++    +   +vP +L+++++a+a+ yGk+f
  CDO69764.1  68 SSAPRAT---K--GPVPAVLTVTSAASAYYYGKTF 97 
                 3333333...3..588*****************98 PP

>> DUF3188  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   4.3e-05      0.26      26      48 ..       3      25 ..       1      26 [. 0.90
   2 ?    1.2   0.2     0.051   3.1e+02      26      36 ..      26      36 ..      22      40 .. 0.70
   3 ?   -3.2   0.2       1.2     7e+03       1       7 [.      62      68 ..      62      71 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
     DUF3188 26 slPallvGlgLivsgavgrgrrr 48
                + Pa+++G++ iv g+ g+ r r
  CDO69764.1  3 AYPAFVMGTLCIVGGITGFARTR 25
                77*****************9987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.051
     DUF3188 26 slPallvGlgL 36
                s+P l++G g+
  CDO69764.1 26 SIPSLVAGVGV 36
                67777887775 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.2
     DUF3188  1 aAplLil 7 
                +A+lL +
  CDO69764.1 62 SALLLLS 68
                5677754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 796.29
//
Query:       CDO69765.1  [L=165]
Description: hypothetical protein BN946_scf184766.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-13   49.0   0.0    1.2e-12   48.3   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    2.4e-11   44.1   0.0    3.8e-11   43.5   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    5.8e-09   35.9   0.0    7.2e-09   35.6   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    0.00012   22.8   0.0    0.00017   22.3   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
     0.0021   17.7   0.1      0.005   16.5   0.1    1.5  1  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.035   14.1   0.0       0.04   13.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.052   13.1   0.0       0.07   12.7   0.0    1.3  1  MTS              Methyltransferase small domain
       0.09   12.1   0.1       0.12   11.7   0.1    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   5.5e-16   1.2e-12       1      76 [.      49     123 ..      49     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 5.5e-16
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhh 76 
                      +L lGcG+ +l++++ +  g ++++ +D+s  ++e++r+++e++++++e++++d++dl+f+d+sfD+ +  g++  
       CDO69765.1  49 ILMLGCGNSTLSQDMYDD-GYKNIVNTDYSGILIEKMRHKHEQSRPEMEWHEMDIRDLHFDDDSFDVAIDKGTMDA 123
                      899***************.69***********************************************99766665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.7e-14   3.8e-11       1      86 [.      50     144 ..      50     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.7e-14
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-........CCHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv........edpekalkeia 85 
                      L +GcG+  l++++ + g +++v++D+s  +++  ++k +++++++e++++d+++l f d+sfD+ + + +++ +        + pe++++++ 
       CDO69765.1  50 LMLGCGNSTLSQDMYDDGyKNIVNTDYSGILIEKMRHKHEQSRPEMEWHEMDIRDLHFDDDSFDVAIDKGTMDAMmtakadvwNPPEEVVQNCN 143
                      679************9999********************999999**********************999888876555444446777777776 PP

                      H CS
  Methyltransf_11  86 R 86 
                      R
       CDO69765.1 144 R 144
                      6 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   3.2e-12   7.2e-09       2      93 ..      44     131 ..      43     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3.2e-12
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl.naladpdki 93 
                      dk  r+l lGCG+++l+  +++  +  +++v+ D+s   ie++r + ++   + +e ++ di +l   + d++fD+ ++++++ + +++++++
       CDO69765.1  44 DKSSRILMLGCGNSTLSQDMYDDGY--KNIVNTDYSGILIEKMRHKHEQSRPE-MEWHEMDIRDLH--FDDDSFDVAIDKGTMdAMMTAKADV 131
                      67889999*************7533..57****************99988886.************..**************96555555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   7.5e-08   0.00017       2      89 ..      51     142 ..      50     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.5e-08
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhl........kdirevl 86 
                       +GcG+++l++ + ++   ++++ +D+s   i    ek++++++++  ++e+ + d+ dl+   +sfD+ +  +++ ++        ++++ev+
       CDO69765.1  51 MLGCGNSTLSQDMYDD-GYKNIVNTDYSGILI----EKMRHKHEQSRPEMEWHEMDIRDLHFDdDSFDVAIDKGTMDAMmtakadvwNPPEEVV 139
                      58************99.9999***********....55555555555677777777776666667********999999877776666666777 PP

  Methyltransf_12  87 dni 89 
                      +n+
       CDO69765.1 140 QNC 142
                      666 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.2e-06     0.005       6      90 ..      37     126 ..      32     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.2e-06
        MetW   6 liaelikpg.srvldlGcGdGellellkee..kqv...dgrGleldeegvaecvak.Glsviqgdldkdlenfedksfdyvvlsqtlqatrn 90 
                 +i eli+++ sr+l lGcG+ +l + + ++  k++   d  G+ +++   ++  ++  ++ ++ d+     +f+d+sfd+++ + t+ a+  
  CDO69765.1  37 IIRELIPDKsSRILMLGCGNSTLSQDMYDDgyKNIvntDYSGILIEKMRHKHEQSRpEMEWHEMDI--RDLHFDDDSFDVAIDKGTMDAMMT 126
                 7899**986369***********9987664224431114456666555444433331344444444..44589*********9999988765 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.8e-05      0.04       9      83 ..      34      96 ..      28     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
  Methyltransf_32  9 laelvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrls 83
                     +a ++++l+ +     ++ +++ +G+G++ Ls+ +++   +   ++v  d +  l+ek ++  e+ +     +++
       CDO69765.1 34 IADIIRELIPD-----KSSRILMLGCGNSTLSQDMYD---DGYKNIVNTDYSGILIEKMRHKHEQSRP----EME 96
                     44445555544.....6889999**************...6567899999999999999888877662....333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05      0.07      27     102 ..      41     116 ..      33     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT.TSTTS-EEEEE CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle.eveekkfdliv 102
                 l  ++s ++l lGcG+  l+  + +   + +++ +d +   +e  ++  e+++ e+e ++ d+ + ++++++fd+ +
  CDO69765.1  41 LIPDKSSRILMLGCGNSTLSQDMYDDGYK-NIVNTDYSGILIEKMRHKHEQSRPEMEWHEMDIRDlHFDDDSFDVAI 116
                 44447789***************998877.79999***************************988345678888765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.2e-05      0.12      43     119 ..      41     114 ..      22     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
                      --S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEE CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDv 119
                        + +++++l + +G + l+ ++ d      ++v  D++  +++  ++k +e++  ++e+   +  +L f+ddsfDv
       CDO69765.1  41 LIPDKSSRILMLGCGNSTLSQDMYDDGY--KNIVNTDYSGILIEKMRHK-HEQSRPEMEWHEMDIRDLHFDDDSFDV 114
                      4455677899999999988888887644..379999*999988888777.567888********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1156.75
//
Query:       CDO69766.1  [L=766]
Description: hypothetical protein BN946_scf184766.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-85  288.1  26.7    1.1e-85  288.1  26.7    1.7  2  Voltage_CLC  Voltage gated chloride channel
    4.1e-06   27.1   0.3      0.081   13.4   0.0    3.0  3  CBS          CBS domain


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.14   1.3e+03     163     192 ..      96     125 ..      77     142 .. 0.77
   2 !  288.1  26.7   1.2e-89   1.1e-85       3     353 ..     190     576 ..     188     577 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.14
                  GHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 163 elilfvllGilgGllgalfvrlllkverlf 192
                   +++++l G+ +G++ga+   l+ ++  l+
   CDO69766.1  96 MWLVIILTGLGIGVVGAWLDVLVKWLGDLR 125
                  456688999999999999888888777655 PP

  == domain 2  score: 288.1 bits;  conditional E-value: 1.2e-89
                  HHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT..--SHHHHH.HHHHHHH CS
  Voltage_CLC   3 gllagllvklvapeaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllkl.srndrdrr.lvaaGaA 96 
                  +  +++lvk +ap+a   Gipe+ka+l+g      l  +vll+k+l+++l+v+sGlslG+eGplv+++++++ +lsrll+   +n+ ++r l+aa+aA
   CDO69766.1 190 AGSSAVLVKTYAPYAFHTGIPEIKAILSGYVLDafLGPWVLLIKALGLALAVASGLSLGKEGPLVHVACCWAYLLSRLLRQsGQNEVRKRkLLAAAAA 287
                  556899************************9999******************************************995543667778888******* PP

                  HHHHHHHT-HHHHHHHHCTTTSTSS--.TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---....--GGGHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC  97 AGiAAaFnaPlgGvlfalEevsrefsl.rallpvfvasvvaalvlrlllgeepa....fgeveslf.alsllelilfvllGilgGllgalfvrlllkv 188
                  AG+++aF++PlgGvlf+lEe+   f+  +++++ fv+sv+aa+ l+ +    ++    f+ v++   ++  +el++ v+l+++gGllg l ++l++++
   CDO69766.1 288 AGVSVAFGSPLGGVLFGLEELDAFFDDgDVMWRGFVTSVIAAVSLQYIDPFGTSklvlFQ-VSESGsTWRAFELVPWVFLAVVGGLLGSLLIKLNTAA 384
                  **********************888668********************444433445555.4433369*****************************9 PP

                  HHHHHCHHCHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-..............HHHHHH...HHHHHHHHHHHHHCTT-CSBSH CS
  Voltage_CLC 189 erlfrkleklkikkrlepalvgllvgllglllpasvlgggyeliasllegstl..............llsllllllllllkllataltlgsgvpgGif 272
                  + ++r+   l  ++++e++ ++++++++++l++  +   + el+a+l+ ++ +              + +++ll+l +l+k+ +ta+t+g+ +p+Gif
   CDO69766.1 385 AVYRRHS-VLHDWPIVEVIGFTAITAAISYLVVF-LRVQSSELVANLFLECDPakgdyhglcnptatWANIFLLVLTALVKIGFTAWTFGMMIPAGIF 480
                  9877766.55566899****************98.55566677999996665567788899999999******************************* PP

                  HHHHHHHHHHHHHHHHHHHHH-C..............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 273 aPsLviGAalGrlvglvlalllp..............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  +P+++iGA+lGr+vgl+ ++++                ++ + +pg++a++G+ a+l+gvtr++++++vi++Eltg+l+++lp+m++v+++k+vad
   CDO69766.1 481 LPTIAIGACLGRAVGLITQAWHRaypnawifsscppdPTVRCiSPGFYAIIGASAMLGGVTRMTISLVVILFELTGALSHVLPIMISVMVSKWVAD 576
                  *****************999976888999999****9888899***************************************************98 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         2   1.8e+04      12      24 ..     392     404 ..     390     416 .. 0.63
   2 !   13.4   0.0   9.1e-06     0.081       7      53 ..     616     664 ..     608     668 .. 0.83
   3 !   10.7   0.0   6.4e-05      0.58      12      52 ..     709     748 ..     696     752 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2
                 EETTSBHHHHHHH CS
         CBS  12 vppdttleealel 24 
                 v  d+++ e++  
  CDO69766.1 392 VLHDWPIVEVIGF 404
                 6678999999855 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.1e-06
                 SSCEEEETT...SBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   7 rdvvtvppd...ttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 +++v+++ d   +t++e+ el +++ ++++PV+   ++l+G v +  l +
  CDO69766.1 616 SNLVVIHDDgqgCTIKELDELVKRHTYHGFPVL-YGDQLLGFVLRDKLRS 664
                 478888888888**********9999******9.3447*****9998876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 6.4e-05
                 EETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS  12 vppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 ++ d +le +++++ + +++++    e gkl G+vt++D++
  CDO69766.1 709 LRKDVPLELVVNMFQKLNLRHI-LFSEGGKLTGMVTKTDIV 748
                 6677788888888977779999.998999***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 4692.02
//
Query:       CDO69767.1  [L=243]
Description: hypothetical protein BN946_scf184766.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-32  109.9   0.0    1.1e-31  109.4   0.0    1.1  1  DSPc             Dual specificity phosphatase, catalytic doma
     0.0014   18.2   0.0     0.0018   17.9   0.0    1.2  1  Y_phosphatase    Protein-tyrosine phosphatase
     0.0035   16.9   0.1     0.0054   16.3   0.1    1.2  1  Y_phosphatase2   Tyrosine phosphatase family
     0.0037   16.9   0.0      0.006   16.3   0.0    1.3  1  CDKN3            Cyclin-dependent kinase inhibitor 3 (CDKN3)
  ------ inclusion threshold ------
      0.068   13.3   0.1       0.12   12.5   0.1    1.4  1  PTPlike_phytase  Inositol hexakisphosphate
       0.11   12.9   0.0       0.16   12.2   0.0    1.3  1  Init_tRNA_PT     Rit1 DUSP-like domain


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   3.7e-35   1.1e-31       1     127 [.     106     233 ..     106     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 3.7e-35
                 EEEEECCHHC.HHHHHHHTCSEEEEESSSSSECECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHH.HHTT-EEEEEESSSSSHHHHHHHHHHHH CS
        DSPc   1 lylgskstas.lallsklgitlvinvtkevpnanalkkseieklripvedehetkiskyleeavefidka.kqkgkkvlVHCqaGisRSatliiaYlmk 97 
                 lyl   +ta  +++l  +g+t+++ v +++p  + +  +  + l+ipved++ ++i ++l+ +++fi++a ++++++vlVHC++GisRS+t+++aYl+ 
  CDO69767.1 106 LYLSGLYTAVdEEQLITMGVTHIVSVIEHRPR-YPRTLTRLKTLHIPVEDNERADILQHLDVTTAFIQSAlENRHNTVLVHCAMGISRSPTVVCAYLIA 203
                 6888888888899**************99996.6667899****************************77699999*********************** PP

                 HHTSCHHHHHHHHHHHSTT-SSTHHHHHHH CS
        DSPc  98 tknlslneayeflkerrpaispnagfirqL 127
                 +k++s +ea+ef+ +rr+ +spn+gf rqL
  CDO69767.1 204 QKSMSPREALEFVASRRQIVSPNPGFRRQL 233
                 *****************************9 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.1e-07    0.0018     159     199 ..     167     208 ..     120     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.1e-07
                    HHHHHHHH.STTSS-EEEECSSSSHHHHHHHHHHHHHHHHHH CS
  Y_phosphatase 159 irkveksk.eaksgpvvVhCsaGvgRtgtfvaldillqqlea 199
                     + + +s  e++++ v+VhC  G++R+ t+v++ +++q+  +
     CDO69767.1 167 TTAFIQSAlENRHNTVLVHCAMGISRSPTVVCAYLIAQKSMS 208
                    3333333356679****************9999888876544 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.8e-06    0.0054      54     110 ..     142     198 ..      98     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
                     HCT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHH CS
  Y_phosphatase2  54 eekiklyhiaiesnkeelveiksdllkkalklllnkenypvllhckrGkhrtglvig 110
                      ++ k++hi +e+n+ +++    d+ +  ++  l++++  vl+hc +G  r  +v+ 
      CDO69767.1 142 LTRLKTLHIPVEDNERADILQHLDVTTAFIQSALENRHNTVLVHCAMGISRSPTVVC 198
                     3689************9999999*************************999988885 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     2e-06     0.006     102     167 ..     146     212 ..     139     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2e-06
                 EEEE----TTS---HHHHHHHHHHH.HHHHHTT--E.EEE-SSSSSHHHHHHHHHHHHH-SSS-HHHH CS
       CDKN3 102 vthhhpiadggtpdiascleimeel.atclknyrkt.lihcygglgrsclvaaclllylsdsispeqa 167
                  t h p+ d    di   l++   +  ++l+n ++t l+hc  g+ rs     c  l    s+sp++a
  CDO69767.1 146 KTLHIPVEDNERADILQHLDVTTAFiQSALENRHNTvLVHCAMGISRSPT-VVCAYLIAQKSMSPREA 212
                 57899***************9987516778887766489*********99.67889999999**9987 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.9e-05      0.12      92     154 ..     137     201 ..      82     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
                      HHHHHHTT-EEEEEEE-TTS---.HHHHHHHHHHHHTS.-T.T-EEEEE-SSSSHHHHHHHHHHHH CS
  PTPlike_phytase  92 relaeelslrYaRipitdekape.eedfdalvsilkea.pe.ktalvfnCqmGrgRTTtamviatL 154
                      r+ ++ ++l+   ip++d+   +  + +d  + ++++a ++ ++ ++++C mG  R+ t++ +a+L
       CDO69767.1 137 RYPRTLTRLKTLHIPVEDNERADiLQHLDVTTAFIQSAlENrHNTVLVHCAMGISRSPTVV-CAYL 201
                      555666777777788888776662578999999999997446**************99875.5555 PP

>> Init_tRNA_PT  Rit1 DUSP-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05      0.16       7      61 ..     150     203 ..     144     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
  Init_tRNA_PT   7 lgsgKkgsknLrtalpkivdfvrkrlsedkkkkilvacetGkdlsvgvaLailck 61 
                   ++ + +++ ++ ++l+  ++f+++ l++++ +++lv+c+ G + s+ v+ a l++
    CDO69767.1 150 IPVEDNERADILQHLDVTTAFIQSALENRH-NTVLVHCAMGISRSPTVVCAYLIA 203
                   55555667788999************9887.88********99999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1750.44
//
Query:       CDO69768.1  [L=653]
Description: hypothetical protein BN946_scf184766.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-54  184.5   0.0    9.4e-46  157.0   0.0    2.4  2  Peptidase_S10  Serine carboxypeptidase
  ------ inclusion threshold ------
       0.42   10.6  11.2        0.8    9.7  11.2    1.4  1  Mucin          Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.0   1.1e-49   9.4e-46      10     302 ..      67     434 ..      59     437 .. 0.82
   2 !   24.9   0.0   1.3e-09   1.2e-05     353     418 ..     454     520 ..     449     521 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 1.1e-49
                    EEEEEEEECS..TTTTEEEEEEEEE-SS........GTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--ST CS
  Peptidase_S10  10 kqysGYldve..eeedkslFYwfvesek........npeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPv 95 
                    +  +G l v+   + +  lF+w +e+e         + + +p  +WLnGGPG+sSl+Gl  E+GP+++n  s+ +  +n++sW+++a+ +++dqPv
     CDO69768.1  67 RNFAGNLPVNraGHPNDTLFFWAFEKEPgsltahadKRSIEPWGIWLNGGPGSSSLIGLTSENGPIHIN--SDFSASQNNFSWDRLADYVWVDQPV 160
                    566777766644578999********98888887766677899**************************..679********************** PP

                    TSTT-EETTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHH CS
  Peptidase_S10  96 GvGFSysntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyv 191
                    GvGFS +++   + +d++e+++d++ fL +  + fp++k+r++y+tGESYaG+y+P+++k+     +    + + +  ++ig+g +  ae ++  +
     CDO69768.1 161 GVGFSTADSA-GYVHDEDEMGRDFMGFLFNLVKVFPSLKTRPLYLTGESYAGTYIPYIMKTYFGLAD----PPVKIAKFAIGDGTVGSAEVYELVP 251
                    *****99985.579*******************************************9998776664....58*************9998888666 PP

                    H........HHHHTTSSH..HHHHHHHHHHHEET........................HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEE CS
  Peptidase_S10 192 e........fayehglis..eeeyeslkkacekk........................eeleqesekcanllekaskvavekenkglnvynileec 253
                             +     l+     ++e+++++   +                        + ++ +s + a+ l++a++  + +++k +nv ++ ++ 
     CDO69768.1 252 TvntietypQ-----LVGydPATFEYFREQE--HlcgydlnltypgcghfptlkfipgQGVAAQSMDSASRLNPATR--ARRQQKLRNVVQLAKRA 338
                    6666443332.....3321133333333332..13355699999999999**9999998888888888999999988..56678888888888888 PP

                    TTSSEE..................................................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSS CS
  Peptidase_S10 254 cklkae..................................................lkksstdaqggedpydesyvekylnkkeVrkalhvnasvk 299
                     + k++                                                  +    ++     dp  + ++++++n++  r alh+++ +k
     CDO69768.1 339 SQGKRRdealvqkrdlsgrangtidpwygcdiydemidyavnfslpwsikhddifgF--DIYQVPDALDPEANMDASAFFNDPRTRAALHAPT-SK 431
                    553333577888889999999999999999999999999999999999999998543..3446677889999999***************985.48 PP

                    S-- CS
  Peptidase_S10 300 kwe 302
                    +w+
     CDO69768.1 432 NWQ 434
                    887 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.3e-09
                    HHHHTECTTECCSCCCEEEE.TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHT CS
  Peptidase_S10 353 wikklelsgkkefrpwevsp.kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqllerfis 418
                    +i++ ++ g ++f++  ++p  ++ng+ +G v++ +n t++ + gaGH vP+ +p + + ll+ fi 
     CDO69768.1 454 VIQNTTFGGIQGFTRRPSTPwFDDNGERGGIVHQERNWTYVLIEGAGHLVPYTNPLRGFILLRDFIL 520
                    7899999999999999999966789999999****************************99999985 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  11.2   8.9e-05       0.8      48     122 ..     563     640 ..     527     651 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.9e-05
       Mucin  48 tttttkppttttttttasttittkttkattttttttttttateaPsd.avttaeaPt.ttttrapsrl.revdGslss 122
                 t  t + p++t ++ ++   + t t  +++t+ t ttt+ta   Ps+ a+  + + + t++t a  ++ r+v+G lss
  CDO69768.1 563 TQSTYTYPSATIAAWSNYIVTATATVITPATAITATTTATAISVPSTkAIDGSSSNNgTSHTNAAIHMdRKVNGLLSS 640
                 333333333333333344445556666777777777777777888751565443333144444444443889998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4156.64
//
Query:       CDO69769.1  [L=976]
Description: hypothetical protein BN946_scf184766.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   12.7   0.0       0.15   11.6   0.0    1.6  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.2e-06      0.15       2     157 ..     530     648 ..     529     734 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.2e-06
                 E-TT..S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   2 pKkg.pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                  K++ pg++R+i   ++ +k+   + ++   d++++ + +   g             +++++++  +   +++lD+  aF ++p     + +  ++++ 
  CDO69769.1 530 EKPNaPGKWRLI--QNCSFKDEHGVSVN---DMIDSEDFPTVWGTAAE---------VADIIANAPEGAQFATLDIDAAFRRIPIYPPHKAYLVIQCE- 613
                 577788999999..88899999999888...44333344444443333.........45555566888999***************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.. CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkr 157
                                        ++ +y+ +++p+G   +  l   +m+++   l+ r
  CDO69769.1 614 -----------------------PGAFYIDHVCPFGVSSGTGLQGSVMDPFVAFLDAR 648
                 .......................79*************99999999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 6707.87
//
Query:       CDO69770.1  [L=992]
Description: hypothetical protein BN946_scf184766.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-18   64.7  62.7      2e-06   27.5   8.1    6.2  6  ZZ            Zinc finger, ZZ type
    0.00056   19.8   0.0     0.0015   18.4   0.0    1.7  1  PB1           PB1 domain
  ------ inclusion threshold ------
      0.057   13.7   0.3       0.26   11.5   0.0    2.3  2  TTSSLRR       Type III secretion system leucine rich repeat p
       0.35   11.2  60.2       0.04   14.2   8.3    6.6  7  C1_2          C1 domain
       0.46   10.7   0.0       0.46   10.7   0.0    4.6  4  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.4      0.86   3.1e+03       4      12 ..     437     445 ..     424     448 .. 0.69
   2 ?    3.7   0.1     0.015        54      28      43 ..     557     571 ..     555     573 .. 0.79
   3 !   25.0  11.6   3.3e-09   1.2e-05       6      41 ..     673     708 ..     670     712 .. 0.87
   4 !   27.5   8.1   5.7e-10     2e-06       5      35 ..     745     774 ..     742     778 .. 0.94
   5 !   24.9   0.5   3.7e-09   1.3e-05       3      28 ..     863     887 ..     861     888 .. 0.94
   6 !    9.7   7.1    0.0002      0.73       1      37 [.     914     948 ..     914     956 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.86
                 -EE-TTT-S CS
          ZZ   4 kytCdgCse 12 
                 ky C +C+e
  CDO69770.1 437 KYVCSTCGE 445
                 466777766 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
                 -EE-HHHHHH.H---S CS
          ZZ  28 YDLCqsCfsthkagkh 43 
                 Y LC+ C ++ ++ +h
  CDO69770.1 557 YELCSTCVQA-YGVQH 571
                 9*******99.55444 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 3.3e-09
                 E-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H-- CS
          ZZ   6 tCdgCseapligvRyhclrcsdYDLCqsCfst.hkag 41 
                  C +C    +   Ry+c++c+d++LC  C+ + h  +
  CDO69770.1 673 RCSTCNT-MITSHRYKCASCDDFNLCRACYRQvHEVH 708
                 699**99.999*********************76544 PP

  == domain 4  score: 27.5 bits;  conditional E-value: 5.7e-10
                 EE-TTT-S..EESSEEEESSSSS-EE-HHHH CS
          ZZ   5 ytCdgCseapligvRyhclrcsdYDLCqsCf 35 
                 ++C  C + +++g+R+hc++c++ D+Cq+C 
  CDO69770.1 745 VHCAHCMQ-EIVGARFHCAVCENVDICQNCD 774
                 79*****9.*********************6 PP

  == domain 5  score: 24.9 bits;  conditional E-value: 3.7e-09
                 S-EE-TTT-S..EESSEEEESSSSS- CS
          ZZ   3 kkytCdgCseapligvRyhclrcsdY 28 
                 +++ CdgC++ p++gvRy+c+ c+ Y
  CDO69770.1 863 HGVACDGCAQ-PIVGVRYQCANCPSY 887
                 7899******.************988 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.0002
                 -SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH CS
          ZZ   1 ihkkytCdgCseapligvRyhclrcsdYDLCqsCfst 37 
                 +h+ + Cd C +  + g  +hc+ c+  DLC+sC   
  CDO69770.1 914 MHQFAVCDRCMS-HIRGEWFHCAYCPK-DLCDSCAEV 948
                 577789******.6666777******7.******876 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.2e-07    0.0015       4      72 ..      26      96 ..      23     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.2e-07
                EEEEETTEEEE..EEEEGSSS-HHHHHHHHHHHHTSTCCSEEEEEEETTSSEEEESSHHHHHHHHHHHHHT CS
         PB1  4 lKlrygggirr..elsvssnisfeeLrakvekrfklsdedvklkYpdedgdlVtitsDeDLeealeearsl 72
                +K+ y +   +  +   ++ ++++ Lr+++ek+  l    + + Y d+d +   it+++DL ea+++ +++
  CDO69770.1 26 VKCLYEDRGNKkiSYNNARLCTYDGLRKQIEKTYCLNGTPFHIAYDDDDSETNFITNEADLTEAINYFKPT 96
                566666655554456667778*************9999***************************998876 PP

>> TTSSLRR  Type III secretion system leucine rich repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.3e-05      0.26      10      50 ..     562     607 ..     558     611 .. 0.89
   2 ?   -3.6   0.1         4   1.4e+04       7      24 ..     793     810 ..     791     813 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
                 XXXXXXXXXXXXXXXXX........--HHHHHHHHHHHHHTS-TTS CS
     TTSSLRR  10 vsypnieithdlsspaeqga.....qteeeYlaaWseWernappee 50 
                  +   ++++h+l+  a++g+      ++e+ ++a s+W r ap++ 
  CDO69770.1 562 TCVQAYGVQHSLELSATPGSspgpsHSPEDEERALSQWRRTAPTQK 607
                 56777889999******9999**********************965 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
                 XXXXXXXXXXXXXXXXXX CS
     TTSSLRR   7 tytvsypnieithdlssp 24 
                  +++++p+ ++t d++s 
  CDO69770.1 793 HIMIKIPHPIPTADVEST 810
                 579999999999999886 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3    0.0038        14      19      38 ..     424     443 ..     417     447 .. 0.85
   2 ?   -1.9   0.0       1.3   4.5e+03      17      27 ..     556     566 ..     550     576 .. 0.75
   3 ?   -1.6   0.4         1   3.6e+03      15      25 ..     629     639 ..     621     642 .. 0.80
   4 ?   14.2   8.3   1.1e-05      0.04      16      46 ..     669     700 ..     658     701 .. 0.88
   5 ?    4.2   7.3     0.015        53      19      46 ..     745     773 ..     736     774 .. 0.91
   6 ?   10.0   0.6   0.00024      0.87      20      38 ..     866     884 ..     859     887 .. 0.89
   7 ?    3.1   7.3     0.035   1.2e+02      20      47 .]     919     946 ..     911     946 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0038
        C1_2  19 fnCsaCgrkidgffYsCseC 38 
                 ++Cs Cg   d  +Y Cs+C
  CDO69770.1 424 TSCSKCGVVLDIIKYVCSTC 443
                 78******998888****99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
        C1_2  17 esfnCsaCgrk 27 
                 +   Cs+C + 
  CDO69770.1 556 GYELCSTCVQA 566
                 56679999775 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
        C1_2  15 ssesfnCsaCg 25 
                 +++ f+C aC 
  CDO69770.1 629 RYSAFHCCACM 639
                 56789999995 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.1e-05
        C1_2  16 sesfnCsaCgrkidgffYsCseC.dfslhvrC 46 
                  ++ +Cs+C + i++ +Y+C  C df+l+  C
  CDO69770.1 669 TGTCRCSTCNTMITSHRYKCASCdDFNLCRAC 700
                 56789********9999***99*66******9 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.015
        C1_2  19 fnCsaCgrkidgffYsCseC.dfslhvrC 46 
                  +C  C ++i g +++C  C ++ ++++C
  CDO69770.1 745 VHCAHCMQEIVGARFHCAVCeNVDICQNC 773
                 58*******99******99*88******9 PP

  == domain 6  score: 10.0 bits;  conditional E-value: 0.00024
        C1_2  20 nCsaCgrkidgffYsCseC 38 
                  C++C ++i g +Y C  C
  CDO69770.1 866 ACDGCAQPIVGVRYQCANC 884
                 7*******99******999 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.035
        C1_2  20 nCsaCgrkidgffYsCseCdfslhvrCa 47 
                  C+ C   i g+ ++C  C   l+ +Ca
  CDO69770.1 919 VCDRCMSHIRGEWFHCAYCPKDLCDSCA 946
                 6**********99***99*********8 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.4     5e+03      31      62 ..     607     639 ..     559     641 .. 0.53
   2 ?  -11.8  16.1         5   1.8e+04       4      74 ..     673     764 ..     670     774 .. 0.53
   3 ?    2.3   0.1     0.052   1.9e+02      43      73 ..     852     883 ..     816     891 .. 0.74
   4 ?   10.7   0.0   0.00013      0.46       3      39 ..     932     968 ..     930     983 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
                   ---CCCEEEECEEEETTSTT.EEEEEEEETTT- CS
  Yippee-Mis18  31 kkvtrnvvvgkelvtdeegk.ctystlsCkgCn 62 
                   k v r   ++k  +++ +++   ys+++C  C 
    CDO69770.1 607 KGVLRHAYIEKSWTHNGWEDvGRYSAFHCCACM 639
                   444444444444444444335667777777775 PP

  == domain 2  score: -11.8 bits;  conditional E-value: 5
                   EETTTS-EEEECCCEEEEECC........................CEEEES---CCCEEEECEEEETTSTT...........EEEEEEEETTT--.E CS
  Yippee-Mis18   4 qCkkCktilgdslqlvsegra........................lnivvlkkvtrnvvvgkelvtdeegk...........ctystlsCkgCns.v 64 
                   +C++C+t ++     +++ ++                         +    ++ t                            +   ++C++C + +
    CDO69770.1 673 RCSTCNTMITSHRYKCASCDDfnlcracyrqvhevhpahaflqvpDKQSSSQSYT---------------AgmidqarlamaLEEPCVHCAHCMQeI 754
                   7999999999888888877776666666644444443333333332222222222...............123333334332333457777775414 PP

                   EEEEEEECSC CS
  Yippee-Mis18  65 lGwkYkstee 74 
                   +G  ++++  
    CDO69770.1 755 VGARFHCAVC 764
                   6777777655 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.052
                   EEETTSTTEEEEEEEETTT--.EEEEEEEECS CS
  Yippee-Mis18  43 lvtdeegkctystlsCkgCns.vlGwkYkste 73 
                   + +d    +  + + C gC++ ++G+ Y++++
    CDO69770.1 852 TRADAGAASLDHGVACDGCAQpIVGVRYQCAN 883
                   444433446777899****98357****9986 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00013
                   EEETTTS-EEEECCCEEEEECCCEEEES---CCCEEE CS
  Yippee-Mis18   3 fqCkkCktilgdslqlvsegralnivvlkkvtrnvvv 39 
                   f+C+ C ++l+ds++ v++++ + ++++ k + n+++
    CDO69770.1 932 FHCAYCPKDLCDSCAEVDTHDPTHLFIVFKSNVNMQI 968
                   9****************96666555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.60
# Mc/sec: 5000.63
//
Query:       CDO69771.1  [L=267]
Description: hypothetical protein BN946_scf184766.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-23   81.8   0.0    7.6e-23   81.2   0.0    1.2  1  Med4         Vitamin-D-receptor interacting Mediator subunit 
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.21   11.6   0.1    1.2  1  Cas_GSU0053  CRISPR-associated protein GSU0053 (Cas_GSU0053)
       0.15   12.4   0.4       0.25   11.7   0.4    1.2  1  Muted        Organelle biogenesis, Muted-like protein
        0.2   11.3   7.7          1    8.9   0.3    2.5  2  Trimer_CC    Trimerisation motif


Domain annotation for each model (and alignments):
>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.7e-26   7.6e-23       5     142 ..      81     208 ..      78     237 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.7e-26
        Med4   5 ekLlaaddelskslkeleehqknearilqLraeveslDekikeivksLkeyekeLkavpdqenskldtasiklaekrevdseeLLdYArrISkytsvpp 103
                  +Lla+d++l++++  +++hq  + ri++L++ev +lD+  +++v++L e ++eL a + + ++ +  + i++a+   + + eLL+YA+ +S +ts+pp
  CDO69771.1  81 SELLAVDAQLAAAVRLAQTHQVKQRRIERLKEEVLELDRRWRDVVGTLDEGRRELDAIIREGEERI--KAIEEAKAAAIPYPELLAYAQSLSAFTSAPP 177
                 68*********************************************************9999999..******************************* PP

        Med4 104 aepkasvtkeptswldemlrgaafrPwPtEdeiRmGlLa 142
                  +p  +  + p  +         f P+P E+++R+G++ 
  CDO69771.1 178 NMPDLAPGQPPPPLF--------FPPFPNEEKMRRGHMN 208
                 ******999999998........9*************96 PP

>> Cas_GSU0053  CRISPR-associated protein GSU0053 (Cas_GSU0053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.6e-05      0.21      41     113 ..      81     153 ..      69     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
  Cas_GSU0053  41 vrvvlvdsvqSqANRlEealldaaadegelklPlievklaekklvssleapHRiadaylrdsqldgkafrkse 113
                   +++ vd+  + A Rl ++ + ++++  +lk   +e + + + +v +l+++ R  da++r++++  ka+++++
   CDO69771.1  81 SELLAVDAQLAAAVRLAQTHQVKQRRIERLKEEVLELDRRWRDVVGTLDEGRRELDAIIREGEERIKAIEEAK 153
                  56778888889999998888888877777886666777667999******************88667776533 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   5.6e-05      0.25      74     137 ..      86     148 ..      79     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.6e-05
       Muted  74 leaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekveelke 137
                 ++a l  + rl q+ ++ ++r+ e+l+e+  e+ ++w +++  l e ++e+D  ++e +e++k+
  CDO69771.1  86 VDAQLAAAVRLAQT-HQVKQRRIERLKEEVLELDRRWRDVVGTLDEGRRELDAIIREGEERIKA 148
                 45666667778888.6778889*************************************99986 PP

>> Trimer_CC  Trimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.3    0.0045        20      31      50 ..      96     115 ..      93     116 .. 0.85
   2 ?    8.9   0.3   0.00023         1      17      48 ..     121     152 ..     118     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHHHH CS
   Trimer_CC  31 LqatVQelQkRLDrLEetvq 50 
                 L  t Q +Q+R+ rL e v 
  CDO69771.1  96 LAQTHQVKQRRIERLKEEVL 115
                 6678899*********9996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00023
                 XXXX--HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Trimer_CC  17 ssdavSRLEEelrkLqatVQelQkRLDrLEet 48 
                 + d+v  L E  r+L a++ e  +R+  +Ee+
  CDO69771.1 121 WRDVVGTLDEGRRELDAIIREGEERIKAIEEA 152
                 89************************999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.56
# Mc/sec: 1439.87
//
Query:       CDO69772.1  [L=663]
Description: hypothetical protein BN946_scf184766.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-45  156.6   0.3    2.2e-29  103.1   0.5    2.9  3  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.5   1.2e-33   2.2e-29      10     129 ..      56     182 ..      49     196 .. 0.88
   2 ?    1.2   0.0     0.011   1.9e+02     275     301 ..     386     411 ..     345     414 .. 0.84
   3 !   48.2   0.0   5.8e-17     1e-12     321     417 ..     457     554 ..     440     556 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 1.2e-33
                    EEEEEEEECS..TTTTEEEEEEEEE-SS........GTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--ST CS
  Peptidase_S10  10 kqysGYldve..eeedkslFYwfvesek........npeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPv 95 
                     +y+G + v+  ++ ++ lF+w +e+e+        + ++ p  +WLnGGPG+sS+ G+++E+GP+r+ +d   ++ +n+ysW++va+ +++dqPv
     CDO69772.1  56 LSYAGNIGVNrpDHPNNTLFFWALEKENgsltvgadERSDVPWGIWLNGGPGSSSMLGFIYENGPIRIGPD--GSPSQNEYSWDHVADYIWIDQPV 149
                    5788888887657899************9**9999666666****************************66..5********************** PP

                    TSTT-EETTSSGS--SHHHHHHHHHHHHHHHHHH CS
  Peptidase_S10  96 GvGFSysntksdvktddeevaedlyefLkkffek 129
                    G+G+S +++ + + +d++e+++d+  ++k +f  
     CDO69772.1 150 GTGWSTTDS-DGYVHDEDEMGRDFPYIMKTYFGL 182
                    *****9888.5579*****************975 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.011
                    CHHHHHHHHTSHHHHHHTT--TTSSS- CS
  Peptidase_S10 275 desyvekylnkkeVrkalhvnasvkkw 301
                    ++ + ++++n+++ r alh+++s k w
     CDO69772.1 386 SPIDGSSFFNDPQARAALHAPTS-KAW 411
                    5556689************9854.677 PP

  == domain 3  score: 48.2 bits;  conditional E-value: 5.8e-17
                    HHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEE.TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHH CS
  Peptidase_S10 321 eeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevsp.kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqller 415
                     ++  +  +++++v++y+G+ D++    gte +i++ ++ g ++f++  ++p  ++ g+ aG v++ +n t++ v gaGH v ++ p +al+ll++
     CDO69772.1 457 DDLAANASAHNIHVVLYSGNDDSLLAHRGTEVVIQNTTFGGIQGFTRKPSTPwYDDAGNFAGIVHQERNWTYVLVDGAGHLVGYNSPPKALTLLRE 552
                    55666778899***************************************99668899************************************** PP

                    HH CS
  Peptidase_S10 416 fi 417
                    fi
     CDO69772.1 553 FI 554
                    98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.55
# Mc/sec: 3610.19
//
Query:       CDO69773.1  [L=653]
Description: hypothetical protein BN946_scf184766.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-182  608.3   0.0   1.8e-182  608.1   0.0    1.0  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.042   13.7   0.0    1.6  1  DUF5519          Family of unknown function (DUF5519)


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  608.1   0.0    2e-186  1.8e-182       1     586 [.      49     638 ..      49     639 .. 0.92

  Alignments for each domain:
  == domain 1  score: 608.1 bits;  conditional E-value: 2e-186
                      S-------HHHHHHHHHHHHHCCS.HHHHHHHHHHHHHHHHC.THHHHHHHHHHHHHSSHT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-GC CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpll.seeelekteklveeflk.geGpkLqerLraekekktsknwledwWedyaYleyrdplvlnsnpfllled 92 
                      LprLPvP+L dTl+++ e+lkp++ se+e++ + k+v++f + + +++Lq+rL++++e++ +  wle+wW+d +Y+  r+++v+n+++++ +++
       CDO69773.1  49 LPRLPVPALADTLAKLKETLKPIAwSENEYADAVKVVDQFANsDYARELQHRLEQRAEEPGRLHWLEEWWDDWSYMGFRESVVVNVSYYYGFKE 142
                      9************************99***************779********66666656779**************************8888 PP

                      CCCTSTCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--..TSS---EEEEEETTEEEEEEC CS
  Carn_acyltransf  93 dpdpkeknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykk..edkesrhivVlrkgqfYkvdv 184
                      +p +  ++++ +raA+++++++ f+++ + ++++ + + k++p+cm++++++f+++R+Pg   D+ v+++k  ++ +s h++Vl++g+++++d 
       CDO69773.1 143 HPAHLPQTPL-HRAASIVRAVMLFREQFKLGQVPSERT-KEGPICMDSWRWMFDCCRVPGPGVDWCVSHAKagDNGRSGHVAVLHRGRVWRLDP 234
                      8885666666.*************************65.479**************************999965566***************** PP

                      ECECTTEE--HHHHHHHHHHHHHHHHCCG.----GGGGGGS-HHHHHHHHHHHCC-TCHHHHHHHHHHCSS-EEEE----SS---HCCHHHHHH CS
  Carn_acyltransf 185 leddggrllspaelekqleeIlsdsekeesaeepvgvlTtenRdewakareellksekkNkeslelIesalfvvcLDdespededeeelakqll 278
                      +  ++g+lls +el++q+++I++   +++++ ++vgvlT++nRd+wak + +l+++ ++N+++++ I+sa+fv+cLD+es  ++   + ++ l+
       CDO69773.1 235 W--QNGQLLSLDELQRQIQHIYD---NTTQEFPGVGVLTASNRDVWAKDYRNLAAD-SHNADIINSIHSAAFVLCLDTESA-PTLV-DHSRVLW 320
                      *..566****************5...444479*********************985.45*********************7.4444.6****** PP

                      CT.............TCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S----S-SSS....-EEE-----HH CS
  Carn_acyltransf 279 hg.............sgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekneeksssseeslpepeklefkldee 359
                      hg             + +nRW+DK++q++v ++Gkag+++EHs++Dgt+++ l+++vl+ +  +++  +++ +s+ss+    +p++l+++++ e
       CDO69773.1 321 HGavdtqsgsarprlGLRNRWMDKPCQFVVLADGKAGFVGEHSVMDGTPTVALCDHVLDLI-ASPDFASSSPSSASSS--ASPPQPLDWHVSAE 411
                      *8899999*******888****************************************999.6666654433333333..5789********** PP

                      HHHHHHHHHHHHHHHHCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS-.....--EEEEEE-TTSTT--EEEEE---HHHHH CS
  Carn_acyltransf 360 lkeaieeaetrldklisdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygkl.....aatyEsastrkFrhGRtEtirsvteesla 448
                      +++aie+a  ++ +l+ ++ l+v++ + yGk  ik+f++spD+++Qm++QlAy rl ++l       tyE+as+rkF +GRtE+ir+v+ +s a
       CDO69773.1 412 TQQAIEAATDAATALVTSQALNVVR-TPYGKAAIKTFGVSPDSWTQMIVQLAYARLLRSLgqrrqGGTYEAASVRKFLKGRTEAIRVVSAQSDA 504
                      *************************.8****************************98777666669**************************** PP

                      HHHHHHS.SCTHCCHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT--HHSS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES-- CS
  Carn_acyltransf 449 fvkamds.kasdeeklellrkAvkahskltkeaakGkGvdrHLfaLkllakelesegeelpelFkdplykklnnwrLsTSqlsspalkgfGfgp 541
                      +v++md+ +a+ + +lel+++Avkah +++++a +G+G+drHL++L+ll+k    ege++p++F+dp++k++++w+LsTS + s+++  +G+g+
       CDO69773.1 505 WVQSMDDaSADVARRLELFKEAVKAHGAYARAAGNGQGIDRHLLGLRLLVK----EGEQMPAMFSDPVVKRSSYWVLSTSAIWSKHFGPYGWGE 594
                      *****77577888889********************************999....6789*********************************** PP

                      SSTT-EEEEEEEE.TC.EEEEEEETCTTS--HHHHHHHHHHHHHHH CS
  Carn_acyltransf 542 vvpdGyGigYiik.ddsisfvisskkksetsserfaeaLeealedi 586
                      vvpdG+G++Y+++ dd ++f+i+s+ + e  +++f+++Le+a++d+
       CDO69773.1 595 VVPDGFGVAYMTGfDDYLQFTITSR-T-EMPNAEFCAELERAAKDL 638
                      ************99**********4.3.479***********9986 PP

>> DUF5519  Family of unknown function (DUF5519)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.6e-06     0.042      55     101 ..     489     537 ..     480     551 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.6e-06
     DUF5519  55 dgessairlvpgs..gWvtvrldteaDvdlllsLvrlalkahqarpeta 101
                 +g+++air+v ++   Wv+   d+ aDv++ l+L++ a kah a+ ++a
  CDO69773.1 489 KGRTEAIRVVSAQsdAWVQSMDDASADVARRLELFKEAVKAHGAYARAA 537
                 47999***97554489**************************9887443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.54
# Mc/sec: 3612.15
//
Query:       CDO69774.1  [L=497]
Description: Carbohydrate Esterase Family 4 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-26   92.2   0.0    4.6e-26   91.2   0.0    1.5  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   2.6e-30   4.6e-26      20     122 ..     248     350 ..     240     352 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 2.6e-30
                      CHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHH CS
  Polysacc_deac_1  20 ntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlfryPygsasatvl 113
                        +++l++L+++++ atffv+g+ v +ypd++ + + +G+ei+ Ht++h+ l+++s+e++ +e++++++a++++lg +p+++r+P+g+++++v+
       CDO69774.1 248 AAPKLLKYLDDKDISATFFVVGSRVVSYPDILIAEYMAGHEIAVHTWSHHPLTAMSNEQIVAELGWTRHAIQQVLGVTPTTMRAPFGDIDNRVR 341
                      6799****************************************************************************************** PP

                      HHHHHTT.E CS
  Polysacc_deac_1 114 evarelgfa 122
                      ++ +++g++
       CDO69774.1 342 AISNAMGLQ 350
                      ******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 2746.00
//
Query:       CDO69775.1  [L=741]
Description: hypothetical protein BN946_scf184766.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-123  411.9   0.0   7.8e-123  411.7   0.0    1.0  1  Sec1      Sec1 family


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.7   0.0  4.3e-127  7.8e-123       1     575 []      25     639 ..      25     639 .. 0.85

  Alignments for each domain:
  == domain 1  score: 411.7 bits;  conditional E-value: 4.3e-127
                 EEEEE-HHHHHHHHTT--HHHHHTTTEEETT..T.--S-.....BTTSEEEEEE-S-HHHHHHHHHHHHSS.-SBS-EEEEESS---HHHHHHHHH..S CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVtkieklk.krepskrealphlkaiyflrptkenidrlakdfisa.rrykeyhifftprlseslleglakade 97 
                 K+Lv+D++++++l+svlk+ d+lee+Vt ie+++ +rep     +p+++a+y+l+ t +n+dr+++df+++ ++y+ +h+ff++ l e+l+e+l+++  
  CDO69775.1  25 KILVVDEHSQRLLGSVLKQFDILEENVTLIESITsHREP-----QPQFEAMYLLMSTSQNVDRIIRDFSNGhQQYAAAHLFFVDGLAEHLFERLTSSPA 118
                 9***************************99988889999.....************************999************************6443 PP

                 .G.GGGEEEEE----SEEEETTEEE-S.TTHHHHSTTG.......GG.........--HHHHHHHHHHHHHHH-..--EEEE-TT-............. CS
        Sec1  98 .evvkkvklkelnldfvplesdlfsln.pelplsfrdlyl..dndns..aleeeieslldriakgLlsvllslekkiPiirykgsa............. 177
                    +k ++  el+++f+++e + f+ + p   ++f + y   + d s     ++++++l+ +++ +++v+l+l + +P+iry++++             
  CDO69775.1 119 ePYLKALQ--ELFINFWAIEAQAFTVRnP--GTFF-NIYSppRSDTSfkPMRDRLDEELRYMSRMIANVCLTL-NEYPYIRYYSPShhpplgplrphas 211
                 34666666..****************642..2233.2222232233355777889******************.67*******999************* PP

                 ......................................HHHHHHHH..........HHHHTTT..--SS--EEEEE-GGG-SSTTTS---BHHHHHHHH CS
        Sec1 178 ......................................asmvakkladelkekidskknfese..ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddl 236
                                                       a mv+++l de+k+    +++f+++  ++r+r +Li++DRs+D v+pllh++TYqa+++dl
  CDO69775.1 212 trppppaettsrwrtnlargsdarayesvegdyvakvlAFMVQQHL-DEYKKA---NPDFPKQsdPPRPRGTLIVTDRSMDTVAPLLHEFTYQAMANDL 306
                 ******************************8888888888888888.777776...677777799********************************** PP

                 S--B..TEEEEEE--SS...SEEEEEE--TT..-TTHHHHTTSBHHHHHHHHHHHHHHHHHHH.HTTT...-TTHHHHHHHHHH-GGGHHHHHHHHHHH CS
        Sec1 237 lggl..nnnnvvleeep...keekeaelvesssDeffaelrhlnfgevgeklkkeakeyqeen.ekkrngakesiadlkkfvaklpelqeekkklskHt 329
                 l+ +  ++ +++++++     e+k a+l++   D+++++lrh+++ e+++kl+++++++ ++n  +k +ga  +++d+k+++a+lp++qe+++      
  CDO69775.1 307 LP-IedGSAYRYKFQTAvgtYEDKVATLSDA--DSVWVDLRHMHMREAIDKLMADFNQFMQDNaGFKGEGAA-NLNDMKDMLANLPQYQEQRE------ 395
                 *9.6355555555555588899999999999..**********************************99776.9*******************...... PP

                 HHHHHHHHHS-HHH.HHHHHHHHHHHH...SS--..B--..-HHHHHHHH..-TTS-H.HHHHHHHHHHHH...-B.-H.........T--GG.....G CS
        Sec1 330 nlaeellkevkkrkldellelEqdlat...gesd.kkikekkvieeliad..deptseledklRLlllyslvegglkek.........elkellr.elv 412
                    +e++ +++++kl  ++++Eq++at   +  + k++k  +++ee+++   ++++ + ++k+R+++ly+  ++g++++         +         +
  CDO69775.1 396 ---KECMAIFERDKLPAVANVEQNCATgvtA--EgKAPK--TLVEEMVPLldSRDVVN-TNKVRIIALYIQHRDGVSDEdrrrlyqhaR-----LtLAE 481
                 ...8***********************8533..334655..89*******98777777.7************99*98776665332222.....23334 PP

                 GHHHHGGGGG........---.BGGG-------.......---------S...TT-----HHHHHHHHHTTT-S-TTTS-BSS-GGGS----....... CS
        Sec1 413 qsalygleylktlrsleklgllkkrkgkksskkksslklikeeedeesnydlsgvsryaPllvrlvealikgkklssespslskkdpsqees....... 504
                 q+a++ l +l       +++++ ++ g+k++kk     +ik++ ++e++y   ++sry+P l +++e+++ gk++ + +p++++ + +++ +       
  CDO69775.1 482 QDAVNALVHL-------GVRIT-RQPGDKDTKK-----KIKQKPSNEEEY---ELSRYKPVLRTVLEEHVGGKLDPTLFPYVRDAPSAAPAPsslrssp 564
                 5565678788.......78775.5666666666.....488888888888...8999*************************9988887777******* PP

                 ......----------------------S-EEEEEEEEEE-HHHHHHHHHHT...TSSSEEEEEEEEE--HHHHHH. CS
        Sec1 505 ......ssslrsakktnsaskesaekkkkqrviVffvGGvTysEiralrllskqekknkeiiigttsilnpksflee 575
                       s ++++++ +++a+  +++++++qr++Vf++GG+TysE+r++ llsk+   nkeiiig+t+ ++p++f+++
  CDO69775.1 565 aiqpvvSLRSQKPNWHKAARGTNTQQDNRQRILVFVAGGMTYSEMREAYLLSKSL--NKEIIIGSTHPVTPRQFVDD 639
                 ****9855555555555555566666689***********************965..*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.54
# Mc/sec: 4144.42
//
Query:       CDO69776.1  [L=1468]
Description: hypothetical protein BN946_scf184766.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-77  260.5   0.0    3.7e-77  259.6   0.0    1.4  1  CNH       CNH domain
    1.2e-41  141.9   0.1    2.3e-41  141.1   0.1    1.5  1  PH_5      Pleckstrin homology domain
    3.5e-37  128.4   0.0    5.6e-37  127.7   0.0    1.3  1  RhoGEF    RhoGEF domain
      4e-15   55.6   0.1    8.5e-15   54.6   0.1    1.6  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin
    0.00049   19.9   2.2     0.0025   17.6   1.0    2.7  2  PH_13     Pleckstrin homology domain
     0.0048   17.4   0.0      0.011   16.2   0.0    1.7  1  PH        PH domain


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.0   1.2e-80   3.7e-77       2     272 ..    1074    1356 ..    1073    1359 .. 0.96

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 1.2e-80
         CNH    2 apitggqrlllGteeGlyllnl.sdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenltqklpetkgchffa 97  
                  ap+++g++ ++Gt++G+yl+nl + +++pvk+  l++v ql+Vlee++ll++l+++q+  ++l+aL++ +   +l+  k+      +  + +++ff+
  CDO69776.1 1074 APFSQGRKAVYGTDDGVYLSNLlEYNREPVKVLALKDVEQLDVLEEYQLLIVLAERQVLTFPLDALDPLD---PLSGLKR-----AKRIASHISFFK 1162
                  7999******************************************************************...5555555.....8899******** PP

         CNH   98 irngyskekfLvvavks.....kivllewneplkkfk................kklrefqvpaevfsisvlkpklcvgvakgFelvnldegaaesll 173 
                    +g + +k+Lv+ vks     +i+ le+ ++  +                  + ++ef++p + +si++lk++lc+g+++gFe+v+l++ +++ ll
  CDO69776.1 1163 --AGVCVGKTLVCVVKSsplssTIKALEPIDQNIRGRskptfrkllqggndtlRVYKEFYIPVQSSSIHFLKTRLCIGCTNGFEIVDLETLDTQGLL 1257
                  ..*****************************86666689********************************************************** PP

         CNH  174 dpednsldfaarkenlkplaviqisedefLlcydefavyvdlqGrrsr.dseleWegkPesvaclepyllafhknfieirsvetgelvqeisgkklr 269 
                  dp+d+sl+f+ ++enlkpla+++i+ +efLlcydefa+yv++ G+rsr d+++ Weg+P+ +a+ +py+laf+++f+eir+vetg + q+i+g++lr
  CDO69776.1 1258 DPADQSLEFVHKRENLKPLAIYRID-NEFLLCYDEFAFYVNKAGWRSRkDFMVYWEGNPTGFALHYPYVLAFEPTFVEIRHVETGAMSQIIQGNNLR 1353
                  *************************.*********************************************************************** PP

         CNH  270 fll 272 
                  +l 
  CDO69776.1 1354 CLF 1356
                  *96 PP

>> PH_5  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.1   7.7e-45   2.3e-41       1     135 []     917    1044 ..     917    1044 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 7.7e-45
        PH_5    1 lifkgtlkkketsksesadiqvyLfDhalLlvkiktvnkreqykvyrrPiPLeLLvvseaedvpkkkglkkrkssslikkkksssnlvlvpekaekk 97  
                  li+kg+lkk+++s+ +  ++ v+LfDhalL+vk+k  +k+eqykvyrrPiPLeLL vs+ ++  ++k  + + +++l+k+++++         +++k
  CDO69776.1  917 LIYKGALKKRGGSQGDGGELMVFLFDHALLMVKPK--SKTEQYKVYRRPIPLELLLVSAPDEFATQK-PQTNRQKQLLKNAPHAPVIP----IKDTK 1006
                  89*********************************..789**********************99993.34444577777777776664....46899 PP

        PH_5   98 kgyaitflhlGkkgyeltLyastlaarqkwlekiekqq 135 
                   g++itf+hlG+k y++tL+ast+++++kw+e+i+kqq
  CDO69776.1 1007 GGFSITFVHLGRKYYQITLWASTYVSQRKWVEHIQKQQ 1044
                  *************************************9 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.0   1.9e-40   5.6e-37       2     182 .]     699     879 ..     698     879 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 1.9e-40
                 HHHHHHHHHHHHHHHHHHHHHTHCCCHHCT....CCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHC CS
      RhoGEF   2 ikElleTErsYvrdLkvlvevylkplsele....vlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYseYcsn 96 
                 i+E++ TEr++vrd+++l + ++kpl+e+        e+ i ++F ni++i++++ + l ++L++r+   +     ++igdv+l+  ++f+ +++Y ++
  CDO69776.1 699 INEVIYTERDFVRDMEYLRDCWIKPLREQDiipeSRREDFITQVFWNINDIIAVN-TRLRDALNKRQ---KAYAVVEQIGDVLLEAVPHFHPFVSYGAH 793
                 99*************************9995555555555669************.99*99999999...6677799********************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  97 ypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                 + + +  +++++++n+ f++f+ee e+rpe +kl+L+ +L kP  Rl rYpLLL+++lk+tp+++pd+ +l k++e ++e+++ +N
  CDO69776.1 794 QLYGKYEFEKEKSTNPAFARFVEETERRPESRKLELNGYLTKPTTRLARYPLLLEAVLKHTPADNPDKTTLPKVVEIVREFLKMVN 879
                 **********************************************************************************9998 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1   2.8e-18   8.5e-15       2      72 .]     439     508 ..     438     508 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.8e-18
                 S-SCEEECTTEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   2 vklkdrrkhlktypncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                 ++l+dr k++ ty+++f G+eavd + + ++++dr+ A+ lg++L +q++++ v+++h+ +rds++ +Yqf
  CDO69776.1 439 IQLSDRVKDGLTYKDAFDGREAVDTIAHIIKTTDRNLALLLGRALDAQKFFHAVTYDHR-LRDSSHDLYQF 508
                 7999*******************************************************.**********9 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.6   7.9e+03      76      99 ..     839     862 ..     834     882 .. 0.76
   2 !   17.6   1.0   8.4e-07    0.0025      21     135 ..     914    1046 ..     893    1057 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.6
                 EE-SS-EETTSEEEE--SSS-.-- CS
       PH_13  76 klYkkpiflnevlvkkpsdksdss 99 
                 +l + p++l+ vl ++p+d+ d++
  CDO69776.1 839 RLARYPLLLEAVLKHTPADNPDKT 862
                 67899******9999999987443 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.4e-07
                  B--EEEEEEEEETTT....--EEEEEEESSEEEEEEEE----.-------S-SS--EEEEE-SS-EETTSEEEE-...................... CS
       PH_13   21 pRkllhsGklyKaks....nKElvgFLfNDFlLltqpvkklsvssaqeklfesksnaqfklYkkpiflnevlvkk...................... 91  
                   R l++ G l K  +    + El+ FLf   lL+++p +               +  q+k+Y++pi l+ +lv                        
  CDO69776.1  914 GRELIYKGALKKRGGsqgdGGELMVFLFDHALLMVKPKS---------------KTEQYKVYRRPIPLELLLVSApdefatqkpqtnrqkqllknap 995 
                  59999*****997652222569*************9952...............3469****************99999999999999999999999 PP

                  ......-SSS-.-.---EEEEEESSEEEEEEESSHHHHHHHHHHHHHHHHH CS
       PH_13   92 ......psdksds.sekvlklsdidkvitlkaesanersaWvkkikeAsek 135 
                         +d++   s + ++l  + ++itl a++  ++ +Wv++i++ +e 
  CDO69776.1  996 hapvipIKDTKGGfSITFVHLGRKYYQITLWASTYVSQRKWVEHIQKQQEV 1046
                  999887445444315556678888888999999999999999999887665 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.8e-06     0.011       2     103 ..     918    1043 ..     917    1045 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
                  EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESST.TCTTESSEEEEEESTTEEEEEEEC.......................TTSSSSTSEEEEEE CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyyknd.ksekdkepkgsislsncevvevva.......................tedpkrkfcfelri 74  
                  +++G L+k+g+ ++    +  ++L+d  ll+ k++ k+e+ k +++ i+l+ + v+ +++                        + +++k  f++++
  CDO69776.1  918 IYKGALKKRGGSQG-DGGELMVFLFDHALLMVKPKsKTEQYKVYRRPIPLELLLVSAPDEfatqkpqtnrqkqllknaphapvIPIKDTKGGFSITF 1013
                  68999999999999.66679999999******************************9999*966666666666666666666655566666666688 PP

                  STSSS.TEEEEEEESSHHHHHHHHHHHHHH CS
          PH   75 verng.srtyllqasseeerkeWikaiqsa 103 
                  v+ ++   +++l as+  + ++W+++iq+ 
  CDO69776.1 1014 VHLGRkYYQITLWASTYVSQRKWVEHIQKQ 1043
                  8778855*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.06u 0.36s 00:00:01.42 Elapsed: 00:00:00.56
# Mc/sec: 7824.70
//
Query:       CDO69777.1  [L=408]
Description: hypothetical protein BN946_scf184766.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 2319.94
//
Query:       CDO69778.1  [L=535]
Description: hypothetical protein BN946_scf184766.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-13   49.2  10.4    1.9e-12   47.8  10.4    1.8  1  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8  10.4   1.1e-16   1.9e-12       3     177 ..     280     493 ..     278     494 .. 0.64

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.1e-16
                 HHHHHHHTS.TTTHHHH....HHHHHHHHHHHHHHHHHHH.........-............TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHH CS
        EI24   3 lrglglllsspkllall....llplllnlllfllllvlll.........w............vllasllvllllllplwlfplvalllaapf....ygl 72 
                 lrg+ + +++p+++  +    l++l+ ++++f++l+++ +         +            v ++sll+l++++ pl+l p+++ ++ a++     g+
  CDO69778.1 280 LRGILFSITHPQIILSVrhalLKSLISSAAVFAVLAFFTYlpqmallaiFtgplaplvalvvVGAESLLLLSFFVRPLFLEPALSHVFDATLlargQGQ 378
                 578888888899855553333666666666666554444477766554414444444444444444666666666666666666666666665555555 PP

                 HHHHHHH.HH..............CCTTSHHHHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHH CS
        EI24  73 laekvekrhl..............glvkslaeslkslllllllllvllpl.liPvvglilsplllswltayfycfeyldlaagrsleerrallerrray 156
                 l+++ + r                +lvk l   ++s    +l+ +++lpl +iP vg++l++l +++  +   +  y+ l   +s+ +r  ++e rra+
  CDO69778.1 379 LVREGKTR-AsasqqnsvargvqgALVKPLQ--VFSKD-GILRYVLTLPLnMIPAVGTVLFLLYNGYNGGPGWHARYFQLKG-FSKGQRASFVEHRRAE 472
                 55555432.1344555333333322233322..22222.25677789999988**************888877888876654.8*************** PP

                 HHHHHHHHHHHTTSCCHHCTH CS
        EI24 157 flgfGllvslllliPllnllf 177
                 + +fG++++l+ +iPl++llf
  CDO69778.1 473 YTAFGMATLLFNFIPLVGLLF 493
                 ********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.55
# Mc/sec: 2915.88
//
Query:       CDO69779.1  [L=535]
Description: hypothetical protein BN946_scf184766.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-67  226.2   0.1    2.8e-67  226.2   0.1    2.4  3  DnaJ-X    X-domain of DnaJ-containing
    4.8e-14   52.2   0.1    3.4e-08   33.5   0.0    2.9  2  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.08   12.9   2.7       0.19   11.7   2.7    1.7  1  MSA-2c    Merozoite surface antigen 2c
       0.47   10.5   5.5       0.27   11.3   1.8    2.3  2  PspB      Phage shock protein B


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.6      0.34   1.5e+03     103     118 ..     138     213 ..      91     269 .. 0.55
   2 !  226.2   0.1   6.4e-71   2.8e-67       2     211 .]     271     475 ..     270     475 .. 0.97
   3 ?   -4.2   0.9       2.1   9.3e+03     179     203 ..     503     527 ..     492     529 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.34
      DnaJ-X 103 aqstmeelakeqekk............................................................k 118
                 + s++  + +e+ek                                                             +
  CDO69779.1 138 MTSVATTMMSEEEKAeieremnggaaptspairetshrplsctspprspspspatspappapapgaepplsanakS 213
                 3333333333333333333444444444444444444444444444444444444444444444444444444441 PP

  == domain 2  score: 226.2 bits;  conditional E-value: 6.4e-71
      DnaJ-X   2 eereeeLakkLrekLspyveadkke.....etesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfk 95 
                 eer+e+L+kkL+e+L+p+vea++++     et +F++k+++ea++Lk esFG+e+lhtIG+iY++kA+sflks +kflg++g+fs++kekg ++kd + 
  CDO69779.1 271 EERIETLTKKLVERLRPFVEAKRPGdkddpETLAFEQKMRREADDLKLESFGVELLHTIGNIYMMKATSFLKS-RKFLGIPGFFSRLKEKGAMAKDAWG 368
                 89*******************987788899999****************************************.************************* PP

      DnaJ-X  96 tvssaldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGeifqka 194
                 ++ sa+ +q+t+ e+++ q k+        e  eeel+ +e++++gk++ a w+g++fe++++lrev+d+vLk+++v+++++++RA++L+++G if+++
  CDO69779.1 369 VIGSAIGVQQTIAEMERLQAKG--------EIAEEELRALEEDVTGKIMLASWRGTRFEVSQVLREVVDRVLKEPGVPDQVLYNRAKGLLLIGAIFKQT 459
                 ********************99........9******************************************************************** PP

      DnaJ-X 195 krtekeeeearvfeelv 211
                 +++e++ ee+r++e++v
  CDO69779.1 460 QPDESD-EERRELERMV 475
                 *****9.7778899987 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 2.1
      DnaJ-X 179 kRAeaLkilGeifqkakrtekeeee 203
                 + A++ k  Ge  ++ak+++++e+e
  CDO69779.1 503 AHANGEKATGEAAASAKADNEKEKE 527
                 4566667777777777777776644 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-06     0.014       5      28 ..      18      41 ..      15      42 .. 0.92
   2 !   33.5   0.0   7.5e-12   3.4e-08      32      63 .]      64      94 ..      58      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-06
                HHTSSTTG-HHHHHHHHHHHHHHH CS
        DnaJ  5 iLgvskdasedeIkkaYrklalky 28
                 Lgvs+d ++ e+kkaYr++a+k+
  CDO69779.1 18 SLGVSPDVDDTELKKAYRRQAIKV 41
                69*******************985 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 7.5e-12
                TSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ 32 knpkdpeaeekFkeineAyevLsdpekRkqYD 63
                kn + p+aeekFkei++Ay++Lsdp+ R+ YD
  CDO69779.1 64 KN-HAPDAEEKFKEISKAYQILSDPNLRAVYD 94
                55.788*************************9 PP

>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.7   4.2e-05      0.19      91     200 ..     115     221 ..      69     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
      MSA-2c  91 ykkhiyakenvkdvtglvkvckeflddesefyklvelykafa.tdiaalkdvteeLlkelqekkPsrtssaetPaPsdaesaaaqPPeskpaqaPaPts 188
                 +  +++ +e+ kd+ g + + ke  + +   +  +e  ka +  ++      t   ++e +++  s ts +  P+Ps a  ++  PP+  p   P   +
  CDO69779.1 115 FFANVFGGERFKDYIGEISLMKEMTSVATTMM--SEEEKAEIeREMNGGAAPTSPAIRETSHRPLSCTSPPRSPSPSPA--TSPAPPAPAPGAEPPLSA 209
                 56788889999999999999999999888888..777777663233333344445556655555577777789999888..666777776666665556 PP

      MSA-2c 189 psqseesssnlq 200
                  ++s+ sssn +
  CDO69779.1 210 NAKSPASSSNSN 221
                 666666666644 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   6.1e-05      0.27      30      61 ..     246     278 ..     243     285 .. 0.84
   2 ?   -0.9   0.1      0.39   1.7e+03      34      51 ..     462     479 ..     456     483 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.1e-05
        PspB  30 krskglsaedekrLeellekA.ekleeRietLE 61 
                 k++ +l+ e++k+L+el e+  + +eeRietL 
  CDO69779.1 246 KKRAKLTPEQKKKLQELEEERrKAMEERIETLT 278
                 67889************9876157*******96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
        PspB  34 glsaedekrLeellekAe 51 
                   s+e++++Le+++ +A 
  CDO69779.1 462 DESDEERRELERMVAEAA 479
                 558899*******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2384  (0.132969); expected 358.6 (0.02)
Passed bias filter:                      996  (0.0555525); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 2910.55
//
Query:       CDO69780.1  [L=129]
Description: hypothetical protein BN946_scf184766.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
          4    7.7  13.8       0.34   11.2   6.7    2.1  2  dbPDZ_assoc  Unstructured region between two PDZ domains on D


Domain annotation for each model (and alignments):
>> dbPDZ_assoc  Unstructured region between two PDZ domains on Dlg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.7   1.9e-05      0.34      17      73 ..      14      71 ..      10      79 .. 0.80
   2 ?    1.1   0.6     0.027   4.8e+02      51      71 ..      93     115 ..      80     124 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.9e-05
  dbPDZ_assoc 17 rlesvsnqstpqgsGattPdnhsiidtlse.qDeGtmtPpskqttPatspknslRlaa 73
                  l   s  +t ++s  tt  + + i t++    +G+ tP s q+ Pats    lR+ +
   CDO69780.1 14 SLKKPSRPTTAESSLLTTSASDASISTMTTlTSNGPSTPRSVQSAPATSFPGKLRMEM 71
                 4666667778888888888888888887652679***************999999976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.027
  dbPDZ_assoc  51 tmtPpskq..ttPatspknslRl 71 
                   mtP+s +  +t   +p++ +R 
   CDO69780.1  93 VMTPSSDDasSTGELTPRKMVRF 115
                  57777764114445566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 854.98
//
Query:       CDO69781.1  [L=327]
Description: hypothetical protein BN946_scf184766.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-44  151.7   0.9      3e-44  151.4   0.2    1.5  2  WLM          WLM domain
    2.3e-08   33.6   0.0    4.2e-08   32.8   0.0    1.4  1  ubiquitin    Ubiquitin family
     0.0027   17.6   0.0      0.016   15.1   0.0    2.2  3  TBK1_ULD     TANK binding kinase 1 ubiquitin-like domain
     0.0087   15.9   0.0      0.027   14.3   0.0    1.8  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.03   14.8   0.2       0.03   14.8   0.2    1.9  2  SVIP         Small VCP/p97-interacting protein
      0.045   14.2   0.0      0.094   13.2   0.0    1.6  1  Ubiquitin_2  Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   5.1e+03     160     180 ..      80     103 ..      34     111 .. 0.59
   2 !  151.4   0.2     1e-47     3e-44       4     190 ..     129     311 ..     126     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
         WLM 160 kgarlGgrse...ektrskasare 180
                   ++lGg  +   e++r+++  re
  CDO69781.1  80 TAEELGGLMAaesEHQRRERILRE 103
                 445566655522222333344444 PP

  == domain 2  score: 151.4 bits;  conditional E-value: 1e-47
         WLM   4 seikvlkkkpekeaalellkriakd..vqpimkkhkfkVglLtElaPkean.lLGlNvnkGekieLrLRtdkddkeflpyesimgtllHELaHnvygpH 99 
                 ++i+ l++ p++e+a++ll+r+a+d  ++ +m+kh+f+VglLtElaP+e+  lLGlNvn G+ i+LrLRtd + ++f+ +++++++l+HEL+Hnv g+H
  CDO69781.1 129 HRIEPLPHLPNPESARDLLTRLANDaaIRHVMRKHQFSVGLLTELAPHEQPhLLGLNVNAGQAIKLRLRTDRY-DGFRTFKEVRRVLCHELTHNVWGDH 226
                 68999********************99********************87655*********************.9************************ PP

         WLM 100 dakFyallkeLekeveelkakGlkegflkeGkrlggkevrnksaeeeeekealekagiagkgarlGgrse.ektrskasareliaaAaerRl 190
                 d++F +l + L+kev e +      g ++  + lg ++       +++ +++ ++  + g+ ++lGg+   + t+s +++r+ +++A+ rRl
  CDO69781.1 227 DNNFKELNSLLNKEVAEFERA-QAAGTHHLSDALGLESP------HSALEAEAQEYVLGGGAYTLGGSGTsTPTDSPEERRRKVLEATMRRL 311
                 ******************993.22344444444444433......3455666667777888899998877556899999999999*****98 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.4e-11   4.2e-08       1      68 [.      10      77 ..       8      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.4e-11
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEEE CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhlv 68
                itv+   g++++l++ +++t++ l ++++e + +p+++q+L+y+Gk    ++ t+ + g++dg++++l 
  CDO69781.1 10 ITVS-HGGTTHPLSLLPDTTLAYLQARLEELTSVPTNNQKLLYKGKNSvPEDATIVDAGLKDGTKVQLI 77
                6677.699**************************************8779**************99986 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06     0.016      21      58 ..      25      62 ..      14      66 .. 0.87
   2 ?   -2.0   0.0       1.2   3.4e+03      10      33 ..     215     238 ..     213     241 .. 0.80
   3 ?   -3.0   0.0       2.4   7.3e+03      38      54 ..     268     284 ..     266     288 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.3e-06
    TBK1_ULD 21 pyntvaifqeevakqTkiaaekQellfeghrlllepsl 58
                p  t+a +q  + + T++++++Q+ll++g++ + e+ +
  CDO69781.1 25 PDTTLAYLQARLEELTSVPTNNQKLLYKGKNSVPEDAT 62
                5678999***********************99988765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
    TBK1_ULD  10 qqatlhkiYihpyntvaifqeeva 33 
                 ++  +h+++ ++ n+++++  ++ 
  CDO69781.1 215 CHELTHNVWGDHDNNFKELNSLLN 238
                 5667899999*****999987765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
    TBK1_ULD  38 iaaekQellfeghrlll 54 
                 ++ae+Qe+ + g  + l
  CDO69781.1 268 LEAEAQEYVLGGGAYTL 284
                 57899***999988776 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     9e-06     0.027      19      70 ..      25      76 ..       1      77 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9e-06
                TTSBHHHHHHHHHHHHT----TT-EEEETTEE.--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD 19 ptttvskLieayrkkkgipeeqkvrLiFDGee.Ldpnstvedldiedgdtidv 70
                p+tt+  L  ++++  ++p  ++++L+++G+    +++t+ d++++dg  +++
  CDO69781.1 25 PDTTLAYLQARLEELTSVPT-NNQKLLYKGKNsVPEDATIVDAGLKDGTKVQL 76
                89******************.*********96377889**********99886 PP

>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6       4.7   1.4e+04      58      58 ..      98      98 ..      88     113 .. 0.46
   2 ?   14.8   0.2     1e-05      0.03      15      40 ..     291     315 ..     282     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
        SVIP 58 e 58
                e
  CDO69781.1 98 E 98
                1 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1e-05
        SVIP  15 eeetpdaeerRrqqaEAAekRqeeqe 40 
                 +  t ++eerRr+ +EA ++R + +e
  CDO69781.1 291 T-PTDSPEERRRKVLEATMRRLQKEE 315
                 4.67899**************98776 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.094       5      52 ..      11      55 ..       7      75 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                 EEEETTSS.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-S CS
  Ubiquitin_2  5 eitssltkavsserrfsksltieelKekLelitGtspasmrLqlyddk 52
                  +++  t    +   + ++ t+++l+++Le +t ++ ++++L ++ ++
   CDO69781.1 11 TVSHGGT---THPLSLLPDTTLAYLQARLEELTSVPTNNQKLLYKGKN 55
                 5555555...455667799***********************987333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2185.36
//
Query:       CDO69782.1  [L=175]
Description: hypothetical protein BN946_scf184766.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1201.86
//
Query:       CDO69783.1  [L=1407]
Description: hypothetical protein BN946_scf184766.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-15   54.9   0.0    7.2e-06   26.2   0.0    3.2  3  BTB        BTB/POZ domain
    1.3e-11   44.9   0.0      0.019   15.6   0.0    4.7  4  RCC1       Regulator of chromosome condensation (RCC1) repeat
    2.2e-10   40.9   4.2    8.7e-07   29.4   0.1    3.3  3  Ank_4      Ankyrin repeats (many copies)
    1.2e-09   38.7   0.1    4.3e-09   36.8   0.1    2.0  1  Ank_2      Ankyrin repeats (3 copies)
    3.4e-09   36.8   1.4    7.5e-05   22.9   0.2    3.6  3  Ank_5      Ankyrin repeats (many copies)
    7.7e-08   32.0   0.4      0.015   15.8   0.0    3.1  2  Ank_3      Ankyrin repeat
     0.0057   17.1   6.4       0.28   11.7   0.2    3.2  3  Ank        Ankyrin repeat


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.9e-09     2e-05      12      75 ..     611     691 ..     605     740 .. 0.83
   2 !   26.2   0.0   2.8e-09   7.2e-06      10     104 ..     773     883 ..     765     889 .. 0.76
   3 ?   -3.4   0.0       4.3   1.1e+04      83     107 ..     894     918 ..     892     919 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7.9e-09
                 -EEEEETT.TEEEEE-HHHHHHH-HHHHHHHTST................TTTTCCCEEEEETTSGHHHHHHHHHHHHHSE CS
         BTB  12 Dvtlvvgd.gkefkahkavLaarSpyFkalftsk................eieessvseielddvepeafealLefiYtge 75 
                 D+++ ++  g  ++ah+++LaarS ++++++ ++                + + +++s+++   ++p ++ +lL ++Y++e
  CDO69783.1 611 DLVVHAECtGIDIPAHRVILAARSAVLSRILADGqtardprsnvsirghaGNNSQGQSQLTFLGCHPLSVLILLVYLYSDE 691
                 55555554799*********************999**999999999998866777777*********************97 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2.8e-09
                 TS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.....TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-............CGGGHHHHHHHH CS
         BTB  10 lcDvtlvvgdgkefkahkavLaarSpyFkalftsk.....eieessvseielddvepeafealLefiYtgeleit............seenleelLaaa 91 
                   Dv++++  +ke+++h ++L arSp+F a f +k     + + +++++++l+  + +a++ +++++ +g  +                + + +++aaa
  CDO69783.1 773 AADVVIRLA-DKEVYCHSVILRARSPFFAAFFDDKdwtrkRWTPEGTVVVDLSHLTWRAMDPVMKYLCCGSDKEIfevvpdvrkadeLIDFVFQVMAAA 870
                 57*******.6************************8888733344445799**************9977642222456777776554333456777777 PP

                 HHHT-HHHHHHHH CS
         BTB  92 dllqiprlkkace 104
                 + l+++rl+ +c+
  CDO69783.1 871 NELHLDRLMLICS 883
                 7777777777775 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.3
                 GHHHHHHHHHHHT-HHHHHHHHHHH CS
         BTB  83 nleelLaaadllqiprlkkaceefl 107
                 n+ ++L+ a +++ + l+++++e++
  CDO69783.1 894 NVCSVLTDATHYHARTLVRLLQEYI 918
                 77889999********999999886 PP

>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.5e-06     0.019       3      49 ..     157     217 ..     155     218 .. 0.72
   2 !   12.5   0.0   6.7e-05      0.17       7      49 ..     237     289 ..     236     290 .. 0.84
   3 !   10.6   0.0   0.00026      0.67       2      41 ..     293     332 ..     292     341 .. 0.65
   4 ?   -1.0   0.0       1.1   2.8e+03      23      49 ..     423     453 ..     416     454 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.5e-06
                 EEEEEE--GGGTTSSSS---EEEEEE-.....GGGTTS.........-EEEEEEETTEEEE CS
        RCC1   3 rVysWGrndyGqLGlgttesvlvPtkv.....eglsgn.........rvvkvacGddhtva 49 
                 ++++WG+n +  LG g+ +++  P  +     + ++ +         rv +++    htv 
  CDO69783.1 157 ELFTWGSNRNAALGVGDGNDRAFPESIslrimPIPETEpvdnrftpiRVRQIVMSKLHTVI 217
                 79****************9998885554444422222244446788899999988888876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.7e-05
                 EE--GGGTTSS......SS---E...EEEEE-GGGTTS.-EEEEEEETTEEEE CS
        RCC1   7 WGrndyGqLGl......gttesv...lvPtkveglsgn.rvvkvacGddhtva 49 
                 WG n + qLG       g++ ++   + P+k++g  +n rv+ va+    +v+
  CDO69783.1 237 WGLNRFSQLGYvvepvtGSRSDEpiqSSPRKIAGAIKNrRVIGVAACKTASVC 289
                 ***********99998877766644555****9999999******99888876 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00026
                 TEEEEEE--GGGTTSSSS-.--EEE.EEE-GGGTTS-EEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt.esvlv.Ptkveglsgnrvvkva 41 
                 ++V++WG  ++GqLG     + v + P+ v+  + ++v++v+
  CDO69783.1 293 DEVFTWG-TNNGQLGYDRAaHPVQIqPRVVTKIT-RPVSSVS 332
                 79*****.678****9666433333366665544.3666665 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.1
                 EEE..EEE-GGGTTS..-EEEEEEETTEEEE CS
        RCC1  23 vlv..Ptkveglsgn..rvvkvacGddhtva 49 
                 + v  P++v  l+++   v +va G d ++ 
  CDO69783.1 423 RFVvqPQRVWALRKQfsAVRDVALGVDGSII 453
                 444559***888888889999***9987765 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   8.6e-05      0.22      24      55 .]      49      82 ..       1      82 [. 0.66
   2 !   29.4   0.1   3.4e-10   8.7e-07       1      55 []      59     117 ..      59     117 .. 0.93
   3 !   18.4   0.1   9.3e-07    0.0024       1      40 [.      97     136 ..      97     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.6e-05
       Ank_4 24 gadinaqdnrsGetalhiAakrgn...veilklLl 55
                 +d+na+ +  G+t lh Aa+  +   +e++++Ll
  CDO69783.1 49 SVDVNAR-DHLGRTVLHLAASAQDaaaPEYVRMLL 82
                345****.*************99999999999997 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 3.4e-10
       Ank_4   1 eltaLhyaai...sgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++t+Lh aa+   +   e+vr Ll +  +++n  d +s++t+lh+A+++gn+  + lLl
  CDO69783.1  59 GRTVLHLAASaqdAAAPEYVRMLLTHpTINVNVADAESHWTPLHRALYHGNLTTALLLL 117
                 589*********************9988*****97799*************99888886 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 9.3e-07
       Ank_4   1 eltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalh 40 
                 ++t+Lh+a ++g+l ++ lLl++ ++d+  + +++G t+++
  CDO69783.1  97 HWTPLHRALYHGNLTTALLLLQRpDIDLTLR-DIEGYTPFD 136
                 589******************9988999999.*******96 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.7e-12   4.3e-09      20      83 .]      50     128 ..       4     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.7e-12
       Ank_2  20 adpn..k.ngktaLhyAakngnlei...vklLleh.......ad.ndgrtpLhyAarsghleivklLlek.gadinlkd 83 
                 +d+n  +  g+t+Lh+Aa++++  +   v++Ll h       ad ++ +tpLh A  +g+l ++ lLl++ ++d++l+d
  CDO69783.1  50 VDVNarDhLGRTVLHLAASAQDAAApeyVRMLLTHptinvnvADaESHWTPLHRALYHGNLTTALLLLQRpDIDLTLRD 128
                 677765369**********997644555******9997755544888*********************77688888876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.18   4.5e+02      17      39 ..       1      23 [.       1      32 [. 0.87
   2 !    9.2   0.2   0.00061       1.6       6      29 ..      49      72 ..      44      95 .. 0.81
   3 !   22.9   0.2   2.9e-08   7.5e-05      13      55 ..      95     137 ..      81     137 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.18
       Ank_5 17 ntpLhvAakygaadvvrlLlarg 39
                +t+Lh   ++++++ +++Ll++g
  CDO69783.1  1 MTALHAYFHQRNQQAFQRLLDPG 23
                69******************554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00061
       Ank_5  6 padvnrldgggntpLhvAakygaa 29
                ++dvn++d  g t+Lh+Aa+++ a
  CDO69783.1 49 SVDVNARDHLGRTVLHLAASAQDA 72
                689*****************6544 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 2.9e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldl 55 
                 + ++ tpLh A ++g+++ ++lLl  +  dl+l+d +G+t++dl
  CDO69783.1  95 ESHW-TPLHRALYHGNLTTALLLLqRPDIDLTLRDIEGYTPFDL 137
                 5566.*************************************97 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.9e-06     0.015       2      30 ..      59      90 ..      58      91 .. 0.90
   2 !   13.2   0.1   3.9e-05     0.099       3      29 ..      98     124 ..      96     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.9e-06
       Ank_3  2 GetpLhlAarsgnl...eivkfLlenkgadvn 30
                G+t LhlAa++++    e+v++Ll ++ ++vn
  CDO69783.1 59 GRTVLHLAASAQDAaapEYVRMLLTHPTINVN 90
                9*************66558***********99 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.9e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh+A+ +gnl+ + +Ll+ + +d+
  CDO69783.1  98 WTPLHRALYHGNLTTALLLLQRPDIDL 124
                 9************99999999888876 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.3   1.4e+04       3       8 ..       1       6 [.       1      13 [. 0.86
   2 !   11.7   0.2   0.00011      0.28       2      31 ..      59      93 ..      58      94 .. 0.81
   3 !    7.6   0.4    0.0021       5.5       3      30 ..      98     127 ..      97     129 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.3
               BBHHHH CS
         Ank 3 nTPLHl 8
               +T+LH 
  CDO69783.1 1 MTALHA 6
               7****6 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                SBBHHHHHHHHTT...HHHHHHHH.TT.TSTTCBT CS
         Ank  2 GnTPLHlAatngk...kriiklLL.hG.Anlnald 31
                G+T+LHlAa+  +   ++ +++LL h   n+n  d
  CDO69783.1 59 GRTVLHLAASAQDaaaPEYVRMLLtHPtINVNVAD 93
                99*******655578899******98547888665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0021
                 BBHHHHHHHHTTHHHHHHHH..TT..TSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL..hG..Anlnal 30 
                 +TPLH+A + g+   + +LL  ++   +l+++
  CDO69783.1  98 WTPLHRALYHGN--LTTALLllQRpdIDLTLR 127
                 7*****995563..555433378833455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.51
# Mc/sec: 8279.89
//
Query:       CDO69784.1  [L=506]
Description: hypothetical protein BN946_scf184766.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3323.88
//
Query:       CDO69785.1  [L=1243]
Description: hypothetical protein BN946_scf184766.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-14   51.3   0.0    1.8e-08   34.0   0.0    3.5  4  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.016   2.9e+02      44      76 ..     193     225 ..     161     230 .. 0.76
   2 !   34.0   0.0     1e-12   1.8e-08      84     162 ..     269     355 ..     257     388 .. 0.76
   3 !   11.8   0.0   5.7e-06       0.1     236     321 ..     419     530 ..     409     533 .. 0.71
   4 ?   -3.5   0.0      0.25   4.5e+03      38      73 ..    1126    1161 ..    1109    1163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.016
     Plavaka  44 yelwfrdplevikellgnpdfadeldyaPerey 76 
                   l++r +++++++  ++  fa ++++ P + +
  CDO69785.1 193 RGLYHRRIMQLVRAAAEDVRFAAQYHWIPNKTF 225
                 458999999999999999999999999999987 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1e-12
     Plavaka  84 rvysemmtgdwaweqq.......ieek....ptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpi 162
                 rvy++    + +++            +    p     ++++ l+sD T+l+ f g+ + +P+Yl +Gn++k +r  +++ a   lay+p 
  CDO69785.1 269 RVYTDSFNSNAMHTEYkkicaspR--NpadgPDVEYAIASILLWSDATHLTSF-GSASLWPIYLYLGNLSKYLRGMPTEFAAHHLAYIPS 355
                 666665555555444445443321..211124557889***************.**********************************95 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 5.7e-06
     Plavaka 236 qgwCpkctakkkelgdl...eeselrtreetlelleeaade...................lkklwkeyglkgviepFwedlpr..adihelltpDlLHq 310
                 ++ C++c +++++l ++   e+ + r+ ++ +++ +  + +                    kkl+++  l++ +  F ++l    ++ +el+ pDl+H+
  CDO69785.1 419 KHPCSRCLVSHDNLCNAgtpEDIADRQANKRRDTPKLRR-DilgarrlvfeqgrslnsakVKKLLDSGSLNPMQSAFSTRLAEfgVNFYELFVPDLMHE 516
                 667999999999995532224445555555444422222.23555677888899999998999******************9744799**********9 PP

     Plavaka 311 ....likgvfkdHlv 321
                     + kg fk Hl+
  CDO69785.1 517 felgVWKGAFK-HLM 530
                 33334577777.876 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 0.25
     Plavaka   38 kwmkeeyelwfrdplevikellgnpdfadeldyaPe 73  
                  +  +++ +lw r p +++++   +  f d  d++Pe
  CDO69785.1 1126 HTDTHQTKLWLRIPAHAVQSFRDHDLFGDLSDTSPE 1161
                  56788999***********99999999998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.49
# Mc/sec: 7703.23
//
Query:       CDO69786.1  [L=135]
Description: hypothetical protein BN946_scf184766.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.50
# Mc/sec: 804.64
//
Query:       CDO69787.1  [L=1038]
Description: hypothetical protein BN946_scf184766.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-42  144.9   1.6    5.7e-42  143.3   1.6    1.9  1  E1-E2_ATPase  E1-E2 ATPase
    8.4e-29  101.4   0.3    1.7e-28  100.4   0.2    1.6  2  Hydrolase     haloacid dehalogenase-like hydrolase
    3.4e-05   24.2   0.1    8.1e-05   23.0   0.1    1.7  1  HMA           Heavy-metal-associated domain
     0.0018   18.7   0.1      0.004   17.6   0.1    1.5  1  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.14   12.1   0.2       0.39   10.7   0.2    1.7  1  DUF4006       Family of unknown function (DUF4006)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   1.6   1.6e-45   5.7e-42       2     180 ..     517     705 ..     516     706 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 1.6e-45
                   SS--EEEEE.-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTT CS
  E1-E2_ATPase   2 llpptakvi.rdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgki 97 
                   l+++ a+++  dg e++ida+ l+++D  ++ + +++ +Dg +++g+++vdes++TGEs+pvek +g+ v++Gt + s +++++V+++  +++++ i
    CDO69787.1 517 LQERNARIVlPDGHEQDIDARLLHYDDQFKVLPDSVIITDGLVISGTSTVDESMMTGESRPVEKAAGSLVIAGTHNGSSTLIVKVIRLPGENTISDI 613
                   6788888888*************************************************************************************** PP

                   STTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  98 arlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavplalalgarrlak 180
                   a++v +a+ +++++q+ +d + +++vpvvl++a+++f+++l +g  ++         +al+ a+++l +++Pca++lavp++++++ +  ak
    CDO69787.1 614 ANMVDDARFSRAKVQEAVDWICGWFVPVVLMLAIITFVVWLAVGIAVRkqpsgeaavTALTYAISVLAISCPCAIGLAVPMVILIAGGVGAK 705
                   ******************************************9999999999*******************************999877665 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.5   1.2e+04      89     135 ..     208     258 ..     185     262 .. 0.64
   2 !  100.4   0.2   4.7e-32   1.7e-28       2     209 ..     723     935 ..     722     936 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.5
                 HHHHHHHHCHHHHHH.......TTHHHHHHHHHHTHHBHTTHH.HHHHHHHHTTE CS
                 xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
   Hydrolase  89 aigsaqsqgrtvall.......qaralavftiadplkvkpeaa.eavasLkaagi 135
                 + ++  ++++ va++        ar++av++i+       + + +++++Lk  gi
  CDO69787.1 208 RADEDGAKHEHVAIDiqedltgRAREHAVLAIKGM--TCTGCEnKLIRTLK--GI 258
                 44444444444444466666667777777777777..77777777777777..66 PP

  == domain 2  score: 100.4 bits;  conditional E-value: 4.7e-32
                 SEEEEESBTTTBCHH.HHHHHHHHHH.CHHHHHHHHHH.......HHCHHHHHHHHHHHHH.....HHHHHHHHHETTTE........HHHHTHHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxx.......xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx........xxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge.psvedvivsa.alalaaaletg.......sehpigkalvaaakar.....sgaltgfatfigrg........ayaigkpewlt 78 
                 + vv+Dk+GT+t+g+ ++v ++++            ++       s+hp  +a+ a ++a        ++ +++++ g+g         +  g+  wl 
  CDO69787.1 723 THVVLDKTGTVTQGRlSVVSRFVDDSvG----FNVSVVvsalvasSRHPVSQAVSACFDADssadtDANVGNVEVVVGKGvqgtllgqSLRGGSAAWLG 817
                 579************7666665555531....2222224455677*********99999996665555556666688888******************* PP

                 HHHCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...ST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx RF
   Hydrolase  79 aldippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet...va 172
                  +      +  i+ + sqg t + +   +r+ a f ++d+  ++pea  +++sL a++i+v +l+gd+p+ + raa +lG           i +    a
  CDO69787.1 818 IE-----SHPVIQPLLSQGLTTFCVvhGDRVIAAFGLSDT--IRPEAHSVLNSLAARNIRVSMLSGDHPSAVYRAAAELG-----------IAAdrvRA 898
                 **.....999999999***9999888888***********..**************************************...........3334459* PP

                 TTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 173 kpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                   +p +k+a i+eL +++e v++ GDg nDa ala+A
  CDO69787.1 899 SCLPADKQAYIKELAAQGETVLFCGDGTNDAIALAQA 935
                 ***********************************98 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.3e-08   8.1e-05       2      57 ..     237     292 ..     236     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.3e-08
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaie 57 
                 ++++gm+C+gC++k  ++L++++ + +vk +l+  ++++++d ++t+l  +++ ie
  CDO69787.1 237 LAIKGMTCTGCENKLIRTLKGISTIFNVKTSLVLCRAEFDFDNSATDLASLVAIIE 292
                 789**************************************999999999999887 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.1e-06     0.004      82     183 ..     849     928 ..     825     933 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
         HAD  82 rpklldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDs 180
                 +  +++p+a  +l+  +a+++rv ++Sg +   v + +aelg    +a +     r+ +        +  ++k a ++e       +++ e+v ++GD+
  CDO69787.1 849 LSDTIRPEAHSVLNSLAARNIRVSMLSGDHPSAVYRAAAELG----IAAD-----RVRAS-------CLPADKQAYIKE------LAAQGETVLFCGDG 925
                 334688********999*************************....9992.....55555.......555555555555......44477889999*** PP

         HAD 181 psD 183
                  +D
  CDO69787.1 926 TND 928
                 999 PP

>> DUF4006  Family of unknown function (DUF4006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00011      0.39      14      37 ..     634     657 ..     630     665 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
     DUF4006  14 itGmliavvLLLsilavLtvlaik 37 
                 i G ++ vvL+L+i+ + + la++
  CDO69787.1 634 ICGWFVPVVLMLAIITFVVWLAVG 657
                 89*****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 6845.32
//
Query:       CDO69788.1  [L=568]
Description: hypothetical protein BN946_scf184766.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-61  206.7   0.0    2.4e-60  204.6   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.6   0.0   1.4e-64   2.4e-60       3     421 ..      44     513 ..      42     515 .. 0.87
   2 ?   -2.9   0.0      0.11   2.1e+03     420     446 ..     537     561 ..     533     565 .. 0.80

  Alignments for each domain:
  == domain 1  score: 204.6 bits;  conditional E-value: 1.4e-64
                 SESEHHCCHCHHHHTT.TCCHHHHHHHHHHHH-SEEEEEETT.EEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHH CS
        p450   3 gptplplvgnllqlgr.keelhevlrklqkkygpifrlklgs.kpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklR 99 
                 +p+  +l+g+l+  +  ++ l +  ++  k+ygp++ ++     +v + +++ a+ +vl +++++ +    ++ l+    + +g+gvl ++ge+++++R
  CDO69788.1  44 PPSSSWLFGHLKDKHLsDDDLLN--DRWVKEYGPVCIIREFFnMAVLLATDTRAINHVLTHSAHYHKPAQAQRDLS----RLLGEGVLITEGEQHRQQR 136
                 56689*******99997666666..788899******986651566667899**********87777766666666....599**************** PP

                 HHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH......................HHHH CS
        p450 100 rfltptltsfgklsleelveeeaedlveklrkkagess...elditellskaaldvigsilFgarfdlledek......................lsel 173
                 r+++p++   +++ l+e++ e a++l + +  + ++++   ++++ + lsk++ldvig    ++++    d++                      ++el
  CDO69788.1 137 RIMNPAFGPAQIRGLTEIFVEKANQLRDVWAAELDAKGeptRINVIRGLSKMTLDVIGLAGESESLP-ESDRSlraeetlagfnyefnalnprgeQNEL 234
                 ********99888********************99999999*****************888777766.5555599999*****************99** PP

                 HHHHHHHHH..HHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC............SCSSCSHHHHHHHHC..TTCTCT. CS
        p450 174 vkaveelss..llskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa............kksrrdfldalllak..kekkge. 255
                  ka+ee++s        + l +lfp++ ++ +k lr+++ a+++++ +  +l+ ++++++ ++            + + rd+l +l++a   +  + + 
  CDO69788.1 235 AKAFEEVFSfpAKIPVLMILRNLFPVFEIIKDKRLRDIEYARRTMHRIGSQLMAQKKAEILREssgeksggvgknSVQGRDLLTLLIKANtaT--DIPd 331
                 ********95323233344557899**********************************99999*********996689**********9542..3335 PP

                 .SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS..... CS
        p450 256 .sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk..... 348
                  + lsde++ a+v ++l+aG++Tts+++sw+Ly L + P+vq+klr E+ +v  +  +pt+d+l+ lpyld+v++E+LRl+p+vp  + R +++     
  CDO69788.1 332 sQRLSDEDVLAQVPTFLVAGHETTSTATSWCLYALSQAPDVQRKLRDELLTVDTE--TPTMDELMALPYLDMVLRESLRLYPAVP-ETGRIAKRddiip 427
                 68**********************************************9999666..8***************************.********44444 PP

                 ........CEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHH CS
        p450 349 ........dvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArme 421
                         +  +++ + i kG+++++++ +++r ++++  +++eF+peR+++  +      +     l F  GpR+CiG r+ ++e
  CDO69788.1 428 ldkpftdkNGNVQDhVRIAKGDIILIPIKTVNRLESLWgADAHEFRPERWENPPAavsTIPGVWGHVLSFLGGPRACIGYRFSIVE 513
                 43333322223445899***********************************999888555788899***************9998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHEEEEESTSTSGGEE CS
        p450 420 melklflatlLqnFevelqpetdpppi 446
                 + +k +l  l++ Fe+   p +dp+ i
  CDO69788.1 537 HRMKALLFALVRAFEFA--PAVDPREI 561
                 679*************9..56666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 3178.24
//
Query:       CDO69789.1  [L=689]
Description: hypothetical protein BN946_scf184766.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.53
# Mc/sec: 3915.25
//
Query:       CDO69790.1  [L=214]
Description: hypothetical protein BN946_scf184766.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.22   11.0   0.0       0.26   10.7   0.0    1.1  1  UvrD-helicase  UvrD/REP helicase N-terminal domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.5e-05      0.26     229     283 ..     102     198 ..      57     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.5e-05
                    C.................................EEHHHHHHHHHH.....HHHH......CHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHH CS
  UvrD-helicase 229 a.................................lDfsdllhalle.....llee......neelaealrerykeiliDEyQDTnkiQyrilklla 280
                    +                                 +D sdl h +l+                ++++++++ r++ il+D  Q +++ Q      +a
     CDO69790.1 102 LwahgsageaevsdafvlvgsqfdstvhafwrvgVDVSDLFHIPLSlrsllE--GmlaekpSPDVLAHYSPRIRKILVDLLQGLQRKQSPYWAAVA 195
                    25555555555677777777777777778888889*********99666440..26666899*****************99999999877766666 PP

                    TTT CS
  UvrD-helicase 281 sgh 283
                    +++
     CDO69790.1 196 RTK 198
                    655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.49
# Mc/sec: 1303.51
//
Query:       CDO69791.1  [L=1123]
Description: hypothetical protein BN946_scf184766.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-18   64.9   0.0    2.8e-15   56.4   0.0    2.2  2  VPS9            Vacuolar sorting protein 9 (VPS9) domain
  ------ inclusion threshold ------
      0.098   12.0  16.0       0.14   11.5   0.6    2.2  2  BUD22           BUD22
       0.63    9.7  18.0       0.12   12.0   4.5    2.2  2  BSP_II          Bone sialoprotein II (BSP-II)
        2.5    8.6  14.2       0.24   11.8   6.3    2.4  2  CENP-B_dimeris  Centromere protein B dimerisation domain
        4.1    7.1  20.7        2.9    7.5   7.7    2.3  2  FAM176          FAM176 family


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0032        12       2      36 ..     596     635 ..     595     667 .. 0.77
   2 !   56.4   0.0   7.7e-19   2.8e-15      40     103 ..     738     801 ..     720     802 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0032
        VPS9   2 eqaseeLkkl.seaksPreKlkcllrtieeiteav....s 36 
                 + + + L +l s ++ P +K  +l+++++++++ +     
  CDO69791.1 596 KACGQTLMQLdSVCRAPADKAAVLVSVHKILVDGLsrlpP 635
                 57899999**5556******************99955551 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 7.7e-19
        VPS9  40 egeslgaDdlLPiliyviikssppnlysnvqfikrFrsktllegeegYylttleaavefiesle 103
                 ++++++ D +LP++i+ ++k++pp+l+s++ + +rFr ++   geegY+l++l a++ef+e+++
  CDO69791.1 738 APTPVSGDIILPLMIFAVVKANPPHLVSHLLYTQRFRRERAAGGEEGYCLVNLMAVAEFLENVD 801
                 5678999******************************************************986 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   3.9e-05      0.14     123     205 ..     454     530 ..     440     714 .. 0.63
   2 ?    4.8   8.9    0.0042        15     217     279 ..     953    1012 ..     920    1029 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
       BUD22 123 vveeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaee......d 205
                 +v+e+  ++++ +g +    +++++kk++k  k++  ++++++   s++eeese++++    +  ++e++ + +++de+ +       +
  CDO69791.1 454 KVQEFWYDLEEEVGKRW---AEDAAKKERK--KRRWHRQQKNA---SGSEEESEKDKE----DVGESEQSLKGGSTDEERDSpraihvN 530
                 44444444444444222...1111111111..11111111111...111111111111....122222222222222221112344442 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0042
       BUD22  217 aqydglla..sddededeyneetdeesseesdssdssesasesesessekkkkkkkkkkkkakak 279 
                  +  dg  +  s++     ++ee+dee+++e+ ++++++s+ + es  se++++++++k ++a+a+
  CDO69791.1  953 RPEDGTPSeeSSE-----EEEEEDEEEDDEEAEEHDTRSIRSFESMMSERSRRARRRKVTSASAR 1012
                  3344422222222.....23445666666666666666666666665555444444444444333 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.6     0.017        62     123     169 ..     471     519 ..     454     530 .. 0.75
   2 ?   12.0   4.5   3.5e-05      0.12      51      82 ..     951     982 ..     914    1017 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.017
      BSP_II 123 agdieekatkeeesdeeeeeee..eeeneeeeaevdeneqgvngtstns 169
                 a+d+++k  k+++ ++++++ +  eee e+++++v e eq+  g st+ 
  CDO69791.1 471 AEDAAKKERKKRRWHRQQKNASgsEEESEKDKEDVGESEQSLKGGSTDE 519
                 5666666666666666655555556777888889**********99974 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.5e-05
      BSP_II  51 seEngdGdsseEeeeeeetsneeenneesnen 82 
                 s   +dG  seE  eeee ++eee++ee++e 
  CDO69791.1 951 SMRPEDGTPSEESSEEEEEEDEEEDDEEAEEH 982
                 22233444444444444443444444443332 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.9      0.19   6.9e+02       8      34 ..     492     518 ..     486     544 .. 0.58
   2 ?   11.8   6.3   6.8e-05      0.24      15      51 ..     959     995 ..     952    1014 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.19
  CENP-B_dimeris   8 agedsesesdeeeeeeeedeededeed 34 
                     +g + ese d+e+  e e+       d
      CDO69791.1 492 SGSEEESEKDKEDVGESEQSLKGGSTD 518
                     344455555555544444443333333 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.8e-05
  CENP-B_dimeris  15 esdeeeeeeeedeededeeddedddevpvpsfgeama 51 
                      s+e  eeeee++e+ed+e+ e+ d   + sf   m+
      CDO69791.1 959 PSEESSEEEEEEDEEEDDEEAEEHDTRSIRSFESMMS 995
                     4566666666667777777888888889999988776 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.0     0.005        18      49     112 ..     472     538 ..     466     540 .. 0.41
   2 ?    7.5   7.7   0.00081       2.9      61     115 ..     959    1018 ..     942    1021 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.005
      FAM176  49 kdlerlkkkkkklkeeseka.....sededeeeeeeeedsseseaeeelsefertlsvnvftsaeeler 112
                 +d+ ++++kk++ ++++++a     ++++d+e+  e+e+s +  +++e +++ r+  ++v + +e++er
  CDO69791.1 472 EDAAKKERKKRRWHRQQKNAsgseeESEKDKEDVGESEQSLKGGSTDEERDSPRA--IHVNHVMEAVER 538
                 4555555555444444444422211222222222233333333334444444444..555555566665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00081
      FAM176   61 lkeeseka....sededeeeeeeeedsseseaeeelsefertlsvnvftsa.eelerAqR 115 
                   +ees+++    +e+ed+ee ee+++ s +++e+ +se +r       tsa     +A+R
  CDO69791.1  959 PSEESSEEeeeeDEEEDDEEAEEHDTRSIRSFESMMSERSRRARRRKVTSAsARKSLADR 1018
                  222322221101333333333344444444455555555544444444444133445655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1182  (0.0659267); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.52
# Mc/sec: 6496.95
//
Query:       CDO69792.1  [L=300]
Description: hypothetical protein BN946_scf184766.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.7   0.5       0.17   11.8   0.0    1.6  2  ZinT      ZinT (YodA) periplasmic lipocalin-like zinc-recruit


Domain annotation for each model (and alignments):
>> ZinT  ZinT (YodA) periplasmic lipocalin-like zinc-recruitment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.27   4.9e+03      59      59 ..     128     128 ..      99     162 .. 0.57
   2 ?   11.8   0.0   9.4e-06      0.17      11      47 ..     239     275 ..     229     288 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.27
                 H CS
        ZinT  59 k 59 
                 +
  CDO69792.1 128 R 128
                 2 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.4e-06
                 -GGG-----GGGG-EEEEESHHHHHTTTTHHHHHHHH CS
        ZinT  11 edkevkdRelsdweGewqsvypylkdGtldevfekka 47 
                  d+ +++R +sd+   w+ v p++++ +l + f+++ 
  CDO69792.1 239 GDDAMRERMMSDYGWAWRQVAPLVEQYNLTQSFKYEV 275
                 58999**************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 1895.58
//
Query:       CDO69793.1  [L=465]
Description: hypothetical protein BN946_scf184766.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-28  100.6   0.6    2.2e-28   99.5   0.0    1.9  2  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   1.2e-32   2.2e-28       3     113 ..      10     120 ..       8     149 .. 0.82
   2 ?   -3.1   0.5      0.47   8.5e+03      86      86 ..     289     289 ..     254     326 .. 0.56

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 1.2e-32
  Pro_isomerase   3 dietsskGrivieLf......adkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkh.krGal 91 
                     iet   G++ ieL       ++++Pkt++nFl+l+ eg+Ydg++FhRv+++f+vq+Gd tg+++ ge     + + ++++dEi+++l++ +rG++
     CDO69793.1  10 IIETT-VGEVDIELWskvrspQRETPKTCRNFLALAMEGYYDGVIFHRVVPDFLVQTGDRTGTGAGGE-----SFYGEPFEDEIHPRLRFaHRGLV 99 
                    56774.7888888862222224689**********************************999876333.....224469******666666***** PP

  Pro_isomerase  92 amartgkepnsagsqFfItlke 113
                    +ma++g  +ns+ sqFfItl++
     CDO69793.1 100 GMANNG-TKNSNDSQFFITLTD 120
                    *****8.69**********986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.47
  Pro_isomerase  86 h 86 
                    h
     CDO69793.1 289 H 289
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2210  (0.123264); expected 358.6 (0.02)
Passed bias filter:                      706  (0.0393775); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 2798.91
//
Query:       CDO69794.1  [L=230]
Description: hypothetical protein BN946_scf184766.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-47  159.6   0.0    7.7e-47  159.4   0.0    1.0  1  Thymidylate_kin  Thymidylate kinase
  ------ inclusion threshold ------
      0.035   14.7   0.1       0.11   13.0   0.0    2.1  2  AAA_18           AAA domain
       0.15   11.9   0.0       0.77    9.6   0.0    2.2  1  dNK              Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   1.3e-50   7.7e-47       1     184 [.      13     196 ..      13     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 1.3e-50
                      EEESTTSSHHHHHHHHHHHHHHTTE..EEEESSSTTSHHHHHHHHHHHTCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HHHHH CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegik.vvltrepggteiGekirelllkeeeleeqteallfaadriehleekikpalkqgktvivdRylfSsl 93 
                      iEGlD++GK+tq+ ll +r+k++g+   ++++++++t+iG++i+++l    e+++++++llf+a+r ++l+ +i+++l+ g+tvi+dRy+fS++
       CDO69794.1  13 IEGLDRSGKSTQVSLLEKRCKDAGLPvRLVKFPDRTTPIGKLIDSYLRSDSEMDDHAIHLLFSANR-WELAPSIIESLNAGTTVICDRYAFSGI 105
                      8*************************99**************************************.*************************** PP

                      HHHHTTTTTTCHHHHHHGGGTTS.E-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHHHHHH CS
  Thymidylate_kin  94 aYqgakegvdldlvlslnedvll.kPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelakederiliidasksieevhee 184
                      a+++ak++  ++  ++  +d+ l +Pd+t++ldv+pe+a +R + ++e++e+ e+q+++ + +++   e+  +  r++ +da +++e+v ee
       CDO69794.1 106 AFSAAKNKPTMSYEWCRAPDIYLpAPDITLFLDVSPEKARERGGYGAERYENAEMQERVEHVFERIGVEIG-DGSRWFAVDADREKEAVAEE 196
                      *****************************************************************99****.5**************99876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05      0.11       1      70 [.      11      88 ..      11     166 .. 0.63
   2 ?   -2.5   0.0       1.2     7e+03     104     111 ..     195     202 ..     185     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss.........a 70
                I++ G  ++GK+t    L+kr+   g  +r v + +++         d+++r d +++d ++ +l  +++         +
  CDO69794.1 11 IVIEGLDRSGKSTQVSLLEKRCkDAGLPVRLVKFPDRTTPIGKLI--DSYLRSDSEMDDHAIHLLFSANRwelapsiieS 88
                89*******************744466666665554444333333..677777777777777777777665555555542 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
      AAA_18 104 eelleRle 111
                 eel+eR++
  CDO69794.1 195 EELWERVQ 202
                 77888875 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00013      0.77       1      23 [.      11      33 ..      11     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHHCCST CS
         dNK  1 ivveGnIgaGKstlvklLskklg 23
                iv+eG   +GKst v+lL+k+++
  CDO69794.1 11 IVIEGLDRSGKSTQVSLLEKRCK 33
                89******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1523.22
//
Query:       CDO69795.1  [L=201]
Description: hypothetical protein BN946_scf184766.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1373.77
//
Query:       CDO69796.1  [L=597]
Description: hypothetical protein BN946_scf184766.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   98.5   1.0    2.6e-28   97.5   1.0    1.5  1  Zds_C     Activator of mitotic machinery Cdc14 phosphatase ac
    0.00044   20.4   1.4    0.00044   20.4   1.4    3.3  3  DUF2076   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> Zds_C  Activator of mitotic machinery Cdc14 phosphatase activation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   1.0   2.9e-32   2.6e-28       7      52 .]     458     503 ..     453     503 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.9e-32
       Zds_C   7 ydtRfpihvERaiYRlsHlKLanprRpLreQVLlSNfMYsYLnlvn 52 
                 +++R+pihvERaiYRlsH+KLanprRpL+eQVL+SN+M++YL ++n
  CDO69796.1 458 MYARYPIHVERAIYRLSHIKLANPRRPLYEQVLISNLMFWYLGVIN 503
                 689*****************************************98 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   4.5         2   1.8e+04     133     142 ..     311     320 ..     268     370 .. 0.53
   2 !   20.4   1.4   4.9e-08   0.00044      76     143 ..     394     459 ..     384     469 .. 0.61
   3 ?   -1.6   6.0      0.26   2.3e+03     125     151 ..     506     533 ..     498     541 .. 0.49

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 2
     DUF2076 133 qqqaqpqygq 142
                 ++ + pq ++
  CDO69796.1 311 SEIPIPQRTP 320
                 2222222222 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 4.9e-08
     DUF2076  76 qqaqeaqaqpssggFLsglFGggkke.rpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqp 143
                 +++++++++++ ggF+++lFG++kk  +pqp+ q+++ ++a+  +    + +++++y +  + pq+g +
  CDO69796.1 394 REREKEKEKEKEGGFFGSLFGSKKKHeEPQPPVQSAAGREAAV-ALLGAS-KSSKNYVP-PPSPQMGMY 459
                 444555677778************9944444444444444444.333333.34444544.467776655 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.26
     DUF2076 125 yaaqpgyaq.qqaqpqygqpaaapqpgg 151
                 +++ +g++q q+++p++g pa+a+ +gg
  CDO69796.1 506 QNQGQGQGQgQAPAPANGAPAQANAGGG 533
                 2222333333466666666655543222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3804.15
//
Query:       CDO69797.1  [L=203]
Description: hypothetical protein BN946_scf184766.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1384.90
//
Query:       CDO69798.1  [L=612]
Description: hypothetical protein BN946_scf184766.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 3765.49
//
Query:       CDO69799.1  [L=1034]
Description: hypothetical protein BN946_scf184766.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-118  393.7   0.0   8.2e-118  393.3   0.0    1.2  1  Plavaka          Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.3   0.0  4.6e-122  8.2e-118       1     324 []     312     628 ..     312     628 .. 0.96

  Alignments for each domain:
  == domain 1  score: 393.3 bits;  conditional E-value: 4.6e-122
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 +++++eL+++iD+ ++ g+p+++++e+ v+ge+           +e+++rd+++++++l+g+pd+a++l +aPer+y+de+++ rvy +m+tg+w+w++
  CDO69799.1 312 YSTSRELNNIIDRrMSAGRPPFERHEIDVAGEI-----------FEVYYRDVIACVRALFGDPDLASQLLVAPERHYADEDNTVRVYFDMNTGQWWWTV 399
                 7899*********999***************99...........**********************************99888**************** PP

     Plavaka  99 qie.ekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLke 196
                 q + e+ +egat++p+i+ssDKT+l+ + gnk+ayPvY++iGn+pk+vr k+srn+++llayLp++kl++i+ ++++r+++ ++l+Hac++r+lepL++
  CDO69799.1 400 QKAlERMKEGATVIPIIISSDKTQLTLI-GNKTAYPVYMTIGNLPKDVRSKPSRNGQILLAYLPTSKLEHIT-NQAARRRMLANLYHACMRRVLEPLQS 496
                 *55455689*****************99.******************************************7.6666666******************* PP

     Plavaka 197 agkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl..eeselrtreetlelleeaade...lkklwkeyglkgviepF 290
                 ag +g  m+++dg++rr +pi+a+ ++DypEq+lv+++++g+Cpkc + ++e+g +   + +lr+  ++l++l++  ++   ++++++e+g+k+ ++pF
  CDO69799.1 497 AGADGLRMASGDGVIRRGHPIFAVHVGDYPEQLLVTGCKNGECPKCPIARTEIGAEmdGHRPLRDLGQVLDALSALDEGpraYTNACREAGIKPLYHPF 595
                 ******************************************************96566679**********99997668999**************** PP

     Plavaka 291 wedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 wedlp+++i++++tpDlLHql++gv+k Hlv+Wv
  CDO69799.1 596 WEDLPYTNIYHAITPDLLHQLYQGVVK-HLVSWV 628
                 ***************************.*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 6674.02
//
Query:       CDO69800.1  [L=179]
Description: hypothetical protein BN946_scf184766.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.53
# Mc/sec: 1023.45
//
Query:       CDO69801.1  [L=92]
Description: hypothetical protein BN946_scf184766.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 517.92
//
Query:       CDO69802.1  [L=380]
Description: hypothetical protein BN946_scf184766.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-52  176.9   0.1    7.4e-52  176.6   0.1    1.1  1  Plavaka      Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6   0.1   4.2e-56   7.4e-52       1     192 [.     200     379 ..     200     380 .] 0.94

  Alignments for each domain:
  == domain 1  score: 176.6 bits;  conditional E-value: 4.2e-56
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 +++a +L+++iD+ l+sg+p+++++e+ v+ge            +e++++++++++++l+++p+fa+ l +aPer+y+d++++ +vy +m+tg+w w q
  CDO69802.1 200 YNTASKLNAIIDNkLSSGRPHFTRREIIVAGEA-----------FEVFYHNVITCVRALFRDPEFAGILIFAPERHYADADHTIHVYFDMHTGKWRWAQ 287
                 78999*******99*****************87...........**********************************99777**************** PP

     Plavaka  99 q.ie.ekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarile 192
                 q +e ++p  gat++p+i+s DKT+l+ f  +k+ayPvY++i n+ k+++rk+  ++++llayL +++l +i+ +k++r+++ ++l+H++++ il+
  CDO69802.1 288 QdMEeRDP--GATIIPIIISLDKTQLTLF-DSKTAYPVYMTIVNLLKDICRKPLWQGQILLAYLLTSNLAHIT-NKAARRRALANLYHTSMHCILK 379
                 *7663444..*******************.9*****************************************7.6666666*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 2030.86
//
Query:       CDO69803.1  [L=299]
Description: hypothetical protein BN946_scf184803.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.6   0.0       0.55   10.7   0.0    2.0  2  TonB_C    Gram-negative bacterial TonB protein C-terminal


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.1e-05      0.55      14      56 ..      93     135 ..      88     156 .. 0.92
   2 ?   -1.9   0.0      0.26   4.7e+03      48      67 ..     250     269 ..     249     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.1e-05
                 EEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-E CS
      TonB_C  14 ieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwk 56 
                 + G+v + +t++ + ++++ +vv+ s    L++aA +  r+w+
  CDO69803.1  93 LYGSVALIYTVSQERRLAQERVVNDSRLMTLEAAARRQWRHWR 135
                 67***********************************999997 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.26
                 HHHHHTT-EE-TT--EEE.. CS
      TonB_C  48 Aleavrkwkfkpapkngkpv 67 
                 Al+  ++w ++ + +n+++v
  CDO69803.1 250 ALQPYQHWAYPLTLQNRERV 269
                 67778999999999997766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.53
# Mc/sec: 1696.28
//
Query:       CDO69804.1  [L=168]
Description: hypothetical protein BN946_scf184803.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.3   0.0        4.6    7.0   0.1    2.3  2  DUF3094   Protein of unknown function (DUF3094)


Domain annotation for each model (and alignments):
>> DUF3094  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00026       4.6      22      34 ..      57      69 ..      51      72 .. 0.84
   2 ?    2.8   0.0    0.0055        99      19      49 ..      77     111 ..      74     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00026
     DUF3094 22 qvERqPFrpWlll 34
                  ER PF pW ++
  CDO69804.1 57 NLERDPFDPWNFV 69
                57********875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0055
     DUF3094  19 PqHqvERqPFr....pWlllvvvlavvigLGllsR 49 
                 Pq   +R+ F+     W   +   a +i L +l+R
  CDO69804.1  77 PQGATDRAAFHsvqnAWAKSMCAFACTIPLAILAR 111
                 77777788886333359999999**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1201.42
//
Query:       CDO69805.1  [L=1171]
Description: hypothetical protein BN946_scf184803.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0068   16.6   1.3      0.031   14.5   1.0    2.4  1  ABC_tran_CTD   ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.024   14.7   3.0      0.037   14.1   1.3    2.3  2  TolA_bind_tri  TolA binding protein trimerisation
       0.03   13.9   0.0       0.14   11.8   0.0    2.2  1  EF-hand_1      EF hand
       0.14   12.2   0.4       0.61   10.2   0.0    2.3  2  EF-hand_6      EF-hand domain
       0.14   12.5   3.0       0.66   10.3   0.2    2.8  2  HalX           HalX domain


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.0   8.5e-06     0.031       9      60 ..    1117    1167 ..    1110    1170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.5e-06
  ABC_tran_CTD    9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeel 60  
                    ++++l  ++ aLE++ +e e +l++ +  s  ++l  l a+le++e  L++l
    CDO69805.1 1117 RFDALHGRLSALEARSSEFEHRLEAMQTAS-NQRLETLDARLERIEGLLAAL 1167
                    6899********************999543.379************999987 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   6.6e+03       2      17 ..     625     640 ..     624     648 .. 0.73
   2 ?   14.1   1.3     1e-05     0.037       4      71 ..    1098    1162 ..    1096    1166 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
  TolA_bind_tri   2 ledrvarLErilears 17 
                    ++dr + LE+++++++
     CDO69805.1 625 VDDRYTNLENLFKQQN 640
                    6889999999998743 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1e-05
  TolA_bind_tri    4 drvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrklea 71  
                     +r++ LE +++a    + +  ++ +al   l+ L     e++++le +++  ++  + lD+rl+++e+
     CDO69805.1 1098 SRMDVLETKIDA---FQQDSAMRFDALHGRLSALEARSSEFEHRLEAMQTASNQRLETLDARLERIEG 1162
                     79999*****99...999***********************************************996 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.9e-05      0.14       2      23 ..     443     464 ..     442     469 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 l+ i++ fD D +G+I++ E  
  CDO69805.1 443 LQAIIEAFDDDASGFITIAEVN 464
                 789****************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00017      0.61       2      23 ..     443     464 ..     442     467 .. 0.85
   2 ?   -2.6   0.0         2   7.3e+03      10      24 ..     682     696 ..     680     697 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 l+++ ++fD d +G+i+++E+ 
  CDO69805.1 443 LQAIIEAFDDDASGFITIAEVN 464
                 6677789*************86 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
   EF-hand_6  10 DkdgdGkidaeElrk 24 
                 D + d ++d+++l +
  CDO69805.1 682 DAEEDQFVDPDQLLN 696
                 677899*****9975 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00018      0.66      17      53 ..    1098    1134 ..    1097    1146 .. 0.89
   2 ?    1.2   0.6      0.13   4.7e+02      30      48 ..    1143    1161 ..    1135    1169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
        HalX   17 sKravLeaekseaeLadseeYqeLearleelraqlde 53  
                  s+++vLe+  ++++ ++  ++++L +rl +l+a+ +e
  CDO69805.1 1098 SRMDVLETKIDAFQQDSAMRFDALHGRLSALEARSSE 1134
                  89*******************************9877 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
        HalX   30 eLadseeYqeLearleelr 48  
                  + a++++ + L arle+++
  CDO69805.1 1143 QTASNQRLETLDARLERIE 1161
                  5688999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 7610.89
//
Query:       CDO69806.1  [L=437]
Description: hypothetical protein BN946_scf184803.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.17   12.1   0.3         13    6.0   0.0    2.8  3  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_


Domain annotation for each model (and alignments):
>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0   0.00074        13      53      75 ..     156     178 ..     151     179 .. 0.92
   2 ?   -3.2   0.0      0.57     1e+04      39      62 ..     184     207 ..     181     208 .. 0.66
   3 ?    2.5   0.3    0.0092   1.7e+02      26      52 ..     374     400 ..     367     402 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00074
  Plasmid_RAQPRD  53 raGIqsYLepsRaqprdpspLsG 75 
                     ++G+++++++ R qp+ p++L++
      CDO69806.1 156 AQGVDKFINTMRGQPHWPAKLKD 178
                     58*****************9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.57
  Plasmid_RAQPRD  39 hfdYdrlrrDleriraGIqsYLep 62 
                     h+dY+++         G++ YL+p
      CDO69806.1 184 HVDYAWMLMNGLLAVIGLKPYLDP 207
                     788888765544455677777776 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.0092
  Plasmid_RAQPRD  26 aeaqakqeekaRvhfdYdrlrrDleri 52 
                     a++ a +++  R++  Y+rlrrD+   
      CDO69806.1 374 ARVVAIEAALRRLRHWYNRLRRDIHKR 400
                     4445555566799999********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2988.82
//
Query:       CDO69807.1  [L=88]
Description: hypothetical protein BN946_scf184803.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-12   45.0   0.1    7.1e-12   44.8   0.1    1.1  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.1     4e-16   7.1e-12      17      66 ..      35      83 ..      32      84 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4e-16
                TSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM 17 ngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                +g++ rG+L + D +mN+ +e++ee++++   ++++g+++iRGnn+++is
  CDO69807.1 35 SGQTRRGILSCLDGYMNIAMEQTEEHVNGR-VTNSYGDTFIRGNNVLYIS 83
                58899**********************999.******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 628.12
//
Query:       CDO69808.1  [L=1051]
Description: hypothetical protein BN946_scf184803.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-57  194.5   0.1    5.2e-57  193.3   0.1    1.6  1  ArAE_2    Aromatic acid exporter family member 2
    5.1e-34  118.1  18.2      1e-31  110.6  14.2    3.9  2  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
    1.8e-07   31.3  17.3    1.8e-07   31.3  17.3    3.3  3  FUSC_2    Fusaric acid resistance protein-like


Domain annotation for each model (and alignments):
>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.1   8.7e-61   5.2e-57       2     229 .]     807    1028 ..     806    1028 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 8.7e-61
      ArAE_2    2 rPksakrlvrktlaktlselgdlyckvlsfaaerlenphihikaerdqirkkilevleklaglkgllvllkfElslkGrwpskkyarlqalvselvq 98  
                     + ++  rkt++ t+selg +yc+++sfa++r+  ++  +  e   i++++++++ kl +   l +++ +E+sl+Grwps++y+++ +l+ ++  
  CDO69808.1  807 PSTTLRKYQRKTMSTTVSELGAVYCSIVSFANTRE--HQEVARGE---IVQSLVAIRLKLKRSLVLKTNIVYEFSLRGRWPSSRYQKILDLQLQIAY 898 
                  455678888************************44..55555566...************************************************* PP

      ArAE_2   99 llarLlvvlkrlepeewlkrllrrvglldpeliadvlavlsmasqaLktGdpLPeilpapLvkrhlellrkqlkleeseeeadslaealslellrse 195 
                  ll++L++v++ lep +w +++lrr+++ld  + +dvlav+sm+s+aL+tG+pLP+i+p+pL++r++ + ++ +   +  ++   l++ ++ ++l++e
  CDO69808.1  899 LLSHLMSVVEHLEP-AWSRAFLRRTRFLDADFQGDVLAVISMISTALRTGNPLPQITPCPLLDRFMVHTHGLNVIRQEADDDYGLPRTMTIDTLENE 994 
                  ************86.9********************************************************999998999999************* PP

      ArAE_2  196 dgrrfivalsialkildrlDelvlvvKglvGEky 229 
                  ++++f+v++++a+ i+ rlD+l++++K+lvGE+y
  CDO69808.1  995 QYLCFSVGVTTAFGIVLRLDKLMVATKELVGEQY 1028
                  *********************************9 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6  14.2   1.7e-35     1e-31       5     463 ..      84     495 ..      81     502 .. 0.85
   2 !    2.8   0.1     0.008        48     218     322 ..     807     909 ..     792     921 .. 0.77

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 1.7e-35
    ArAE_2_N   5 awlldhldlrsfKvifRswvavwvaiiLmvipptarwlGtaayLllivsvivpsGggsvivfilialllllgiclawawaviamkianrarpdaitqar 103
                 +w+  +l + + K ++R++   +v++iLmvip++++ +G+  +L+li s++  + + +    +   ++ ++++++awaw  +  ++a  ar +      
  CDO69808.1  84 SWIPPNLTYSKIKPVIRCAFVCFVSAILMVIPRVYNLMGQGSFLILISSFLDAP-SDPFLAVLEREVIFITFVVMAWAWCCLGIFLAGLARVH------ 175
                 58999999**********************************************.************************************88...... PP

    ArAE_2_N 104 laqllieeglcantsgaelaacaqeqvydgkmltarvsvvyavllcvflffvgrlrakspk..falgaifgiIaadvfltyapmlPlfapgtlglallk 200
                              t    + +   + + +g + +a  +v++av++++   f+++++a+  +  + +++if  I +d+++t a+++P+     +g ++  
  CDO69808.1 176 -------------T----DYSAPMDAIQAGEFVEAAPTVILAVFVFLGSAFFLYIKARLGPgpYLFASIFACICVDISMTTAVLFPY-PYYLVGQVIAL 256
                 .............3....34445567789*****************************98888************************.8889999999* PP

    ArAE_2_N 201 PmgiglalkvvvsllifPttssfqvlktmlkllkllkkalkfnsnflatlepsnesewlnfkklekditkirslypkleaelaflplEfsigrfsaedv 299
                 P +  ++l+++ s lifP t + q++ t+ ++   l   l +++++l tl+ps e++ +  k+l+++  k  + + +  a + +l+ ++ +grf++ ++
  CDO69808.1 257 PLAFHCGLSIIFSALIFPCTITAQYTHTLFNVFAPLDDFLALHRKVL-TLDPSSEEFKATVKTLTATLGKSEGGLGQAAANARLLKQDIVYGRFQPSKI 354
                 *********************************************99.68888888889************************************9888 PP

    ArAE_2_N 300 kelrstlrrlissiagLvyfydlleelravilkserssklaanghakldseieekkrevgayetkksielleardaqrsltlsdldeviealrelsgei 398
                  +l+              + + +l +l +      + s la+        ++   +  vg++e+++++++       ++  l+   + ++ l+e++ e+
  CDO69808.1 355 ADLQPIH----HEEHQHHEVHFSLLNLAH------ALSPLAR------VPTASSGETAVGVFESQRYMAIEAT-RLSHPDELDVTAHFVRLLHESCDEL 436
                 8776322....233334444445555544......3333343......456666779***********99885.7789999****************** PP

    ArAE_2_N 399 leaveegletivewleaanefR.iyslalpwnakkhkekqkeaaaeleeaketlekaledfakakr 463
                 le+ +++++++  w + + +   + +  + ++++        + a+le + +  ++al+ f+k+kr
  CDO69808.1 437 LETTQGAIKDVQGWFAEVRRGSfGGRARIEKARAA-------RLAKLEALSQGVKDALQRFKKDKR 495
                 **************988766652222233333333.......556666666666666666666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.008
    ArAE_2_N 218 Pttssfqv.lktmlkllkllkkalkfnsnflatlepsnesewlnfkklekditkirslypkleaelaflplEfs.igrfsaedvkelrstlrrlissia 314
                 P t+ + +  ktm+  +++l +a+ +++  +a++++++e       ++ +  + ir +++   +  + + +Efs +gr+    ++++     +++  ++
  CDO69808.1 807 PSTTLRKYqRKTMSTTVSEL-GAVYCSIVSFANTREHQEVAR---GEIVQSLVAIRLKLKRSLVLKTNIVYEFSlRGRWPSSRYQKILDLQLQIAYLLS 901
                 44443333146667777777.577788888888888887766...9****************************66*********99888877777777 PP

    ArAE_2_N 315 gLvyfydl 322
                  L+  ++ 
  CDO69808.1 902 HLMSVVEH 909
                 77776655 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6       0.6   3.6e+03      70     113 ..     106     147 ..      93     171 .. 0.45
   2 ?   -5.4  10.1         3   1.8e+04      63      98 ..     199     238 ..     152     300 .. 0.59
   3 !   31.3  17.3     3e-11   1.8e-07      12     127 .]     672     802 ..     636     802 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.6
      FUSC_2  70 lvfliafflkrnyalafifltllalllyslaagsgnpieialhR 113
                 +v  i +++ r y l+    ++l+l++  l +++ +p+ ++l+R
  CDO69808.1 106 FVSAILMVIPRVYNLM-GQGSFLILISSFL-DAPSDPFLAVLER 147
                 3333333333333222.2222233333333.2344455555555 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 3
      FUSC_2  63 lallvfllvfliaffl....krnyalafifltllalllys 98 
                 la++vfl + ++ +++      +y +a if ++ + ++++
  CDO69808.1 199 LAVFVFLGSAFFLYIKarlgPGPYLFASIFACICVDISMT 238
                 2233333333333333112134455555555444433332 PP

  == domain 3  score: 31.3 bits;  conditional E-value: 3e-11
      FUSC_2  12 wrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.....lalallvfllvfliaf...flkrnyal.afifltllalllyslaa 101
                 +r+ W +++  + l++ +g++++ +v+Ri+ t++G +++ +++y+  g+     ++la++v ++  +++f    +  +++  +++f+t+ ++l +s ++
  CDO69808.1 672 ERFVWGIFMGQLTLARFRGDTTFGLVARIISTFMGGLVGTAMWYISTGSgqgnpYGLAAVVGVCAPFFFFwrlYWPVPPMTnIIFFVTAALVLGFSWQN 770
                 799*****************************************8775333448899977766644433312144677777255566777777777765 PP

      FUSC_2 102 .gsgnpie..........ialhRlldvliGiliallv 127
                        +          +a+ R++ v+ G+  a+l+
  CDO69808.1 771 tH-----TllpfkfmgwqLAWRRFVLVVCGVTAAFLF 802
                 42.....33345588888****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 7158.63
//
Query:       CDO69809.1  [L=1538]
Description: hypothetical protein BN946_scf184803.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-34  115.3  16.3    3.4e-05   24.5   0.0   10.9 10  WD40          WD domain, G-beta repeat
    5.5e-13   49.0   0.0      0.017   15.4   0.0    6.6  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.5e-06   28.3   0.5    4.9e-06   26.6   0.5    1.9  1  NACHT         NACHT domain
    6.8e-06   25.3   0.3       0.32    9.9   0.0    5.2  6  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    0.00018   21.4   0.0      0.094   12.6   0.0    3.9  5  eIF2A         Eukaryotic translation initiation factor eIF2A
    0.00041   19.0   0.1       0.29    9.6   0.0    2.4  2  Cytochrom_D1  Cytochrome D1 heme domain
     0.0012   18.3   0.0        0.4   10.0   0.0    3.3  4  WD40_like     WD40-like domain
     0.0015   19.0   0.1      0.006   17.0   0.1    2.0  1  AAA_16        AAA ATPase domain
     0.0047   16.2   0.0     0.0077   15.5   0.0    1.3  1  KAP_NTPase    KAP family P-loop domain
     0.0091   16.3   0.0      0.022   15.0   0.0    1.6  1  AAA_22        AAA domain
  ------ inclusion threshold ------
       0.27   11.2   5.7         14    5.8   0.1    4.5  4  PD40          WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0034       5.5       7      36 ..     870     899 ..     865     901 .. 0.81
   2 !   24.5   0.0   2.1e-08   3.4e-05       3      38 .]     907     942 ..     905     942 .. 0.92
   3 !   21.6   0.5   1.7e-07   0.00028       3      38 .]     948     984 ..     946     984 .. 0.83
   4 !   20.9   0.0   2.9e-07   0.00047       7      38 .]     994    1024 ..     988    1024 .. 0.84
   5 !   13.2   0.0   7.7e-05      0.13       3      37 ..    1030    1064 ..    1028    1065 .. 0.90
   6 ?   -0.6   0.1       1.7   2.8e+03      15      28 ..    1122    1137 ..    1103    1138 .. 0.80
   7 ?    1.6   0.0      0.35   5.8e+02      16      37 ..    1196    1240 ..    1177    1241 .. 0.59
   8 !   17.3   0.1   3.9e-06    0.0064       1      37 [.    1245    1282 ..    1245    1283 .. 0.91
   9 ?    5.4   0.1     0.023        37      15      29 ..    1309    1323 ..    1301    1333 .. 0.87
  10 ?    1.3   0.0      0.45   7.4e+02      10      31 ..    1375    1393 ..    1366    1401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0034
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvri 36 
                 l+G    ++sl+fspdg+ +a G++ g++ i
  CDO69809.1 870 LSGA-TvIYSLDFSPDGKRIALGGEYGSIQI 899
                 5566.337***********987999999976 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 2.1e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l+ l+GH + v  +afsp g+ ++sGs D+ v++Wd
  CDO69809.1 907 QLQALEGHsKRV-NVAFSPTGREILSGSADRMVKLWD 942
                 678899**888*.***********************9 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 1.7e-07
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 cl+t+    + v+ +a+spdg + a+G  Dgtv +W+
  CDO69809.1 948 CLHTWVEFsGEVHTVAWSPDGVFAAAGATDGTVTLWK 984
                 88886555233****************88*******6 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 2.9e-07
                  EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  l+ H + v+++ fspd   + sGs D+t++iWd
  CDO69809.1  994 LR-HeDRVRDITFSPDYFVV-SGSADKTCKIWD 1024
                  54.8666*********8885.8**********9 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 7.7e-05
                  EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37  
                  +++tl+ H s+v+++a s dg+++a+G + g v +W
  CDO69809.1 1030 PIHTLE-HtSPVYAVAASGDGSLIACGLESGEVVLW 1064
                  789996.9899**************9989******9 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.7
                  EEEEETTSSEEE..EE CS
        WD40   15 slafspdgawla..sG 28  
                  ++afs++ga +a  +G
  CDO69809.1 1122 GVAFSSNGAHIAlaAG 1137
                  799*******643266 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.35
                  EEEETTSSEEEE........................EETTSEEEEE CS
        WD40   16 lafspdgawlas........................GsdDgtvriW 37  
                  + +spd +++++                        Gs ++++ +W
  CDO69809.1 1196 VLVSPDAQLILAvyakkiellsastgerlriiqhsaGS-NHSISVW 1240
                  55666666633333333333334444444444444389.******* PP

  == domain 8  score: 17.3 bits;  conditional E-value: 3.9e-06
                  TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriW 37  
                  gq+++ + GHss v  + f +d + ++s+s+Dgt+r W
  CDO69809.1 1245 GQLIGNYVGHSSiVFTVIFTRDERHILSASYDGTIRRW 1282
                  688999****6657**********************88 PP

  == domain 9  score: 5.4 bits;  conditional E-value: 0.023
                  EEEEETTSSEEEEEE CS
        WD40   15 slafspdgawlasGs 29  
                  sla+s+dg+w++s+s
  CDO69809.1 1309 SLAVSSDGRWILSCS 1323
                  899*********998 PP

  == domain 10  score: 1.3 bits;  conditional E-value: 0.45
                  SSSEEEEEEETTSSEEEEEETT CS
        WD40   10 HssvtslafspdgawlasGsdD 31  
                  H  v slafs d +  ++Gs D
  CDO69809.1 1375 H--VVSLAFSEDCTRALAGS-D 1393
                  4..99**********999*9.4 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05     0.017      40      81 ..     875     916 ..     864     920 .. 0.89
   2 ?    3.6   0.0     0.049        80      43      76 ..     919     952 ..     912     956 .. 0.90
   3 !   11.9   0.0   0.00013      0.22      39      75 ..     957     993 ..     953    1007 .. 0.81
   4 ?    3.2   0.0     0.067   1.1e+02      37      81 ..     996    1039 ..     990    1047 .. 0.86
   5 !    8.2   0.0    0.0019       3.1      33      78 ..    1032    1077 ..    1020    1124 .. 0.80
   6 ?   -0.7   0.0       1.1   1.8e+03      48      82 ..    1200    1233 ..    1170    1246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   + sL ++pdgk +a + + g++++ld ++g  +++l+ +s+
   CDO69809.1 875 VIYSLDFSPDGKRIALGGEYGSIQILDTYTGAQLQALEGHSK 916
                  4779*****************************999988876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.049
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++a++p g+ +  + +d  v+l d+ s  ++h++
   CDO69809.1 919 NVAFSPTGREILSGSADRMVKLWDVASSACLHTW 952
                  689***************************9986 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +ev+ +aW+pdg + a +  dg+v l +++s +    
   CDO69809.1 957 GEVHTVAWSPDGVFAAAGATDGTVTLWKVSSLEKTAV 993
                  799***********************99988665554 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.067
  ANAPC4_WD40   37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81  
                   ++ +vr++ ++pd  + + + +d ++++ d e +  +h+l+ +s 
   CDO69809.1  996 HEDRVRDITFSPD-YFVVSGSADKTCKIWDLERQVPIHTLEHTSP 1039
                   5678999999997.68899*******************9987765 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0019
  ANAPC4_WD40   33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78  
                   ++ ++ s v ++a + dg+l+a + + gev l + +sg+ ++sl+ 
   CDO69809.1 1032 HTLEHTSPVYAVAASGDGSLIACGLESGEVVLWQKSSGQRLRSLPG 1077
                   5567888899999999999999999999999999999998888764 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1.1
  ANAPC4_WD40   48 pdgklLavaysdgevrlldaesgkvvhslsvksek 82  
                   pd +l+  +y   +++ll+a++g+ ++ ++ ++ +
   CDO69809.1 1200 PDAQLILAVY-AKKIELLSASTGERLRIIQHSAGS 1233
                   5555555544.4589*******9988877766655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.5     3e-09   4.9e-06       2     159 ..     309     494 ..     308     500 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3e-09
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-......-HCHHHCCCCTS--SSS-C.......................... CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna...rsladllfsqlpepaapvse.......................... 71 
                 l++++  aG GKTtL+q +a+  a+ +  +ga     f+++re +rs      + +a  l+  +++  ++                             
  CDO69809.1 309 LLWIKASAGAGKTTLAQTVATWCADHQFLGGA-----FFCSREGERSDILrivTNIAVELAHRCDDFHDALLAttkanpyiqtsqvsqqlktllveplr 402
                 6899999***********99877777766654.....66666666654443364444444444444444443377788888877777777777777755 PP

                 CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE.............EEEE--TCCHHHHHH CS
       NACHT  72 vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleea...........ivlevegfsesrrkqlv 159
                 v++   + p+ l++++D+lDe+ ++ +      v + +s  i +  l   ++++t+rp     + ++++               ++ +++++ ++++++
  CDO69809.1 403 VVIAKGSFPKNLVIVVDALDECDDEKPV---STVLQAISLYIAE--LAPLKFIITSRPVET--ITRGFKVLeelqkkthqlpLDTQSPELTKRDIATFL 494
                 4455556777777**********98877...8889999999999..999999999999988..555544332223224554555555555555555555 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.047        77     174     217 ..     858     903 ..     846     910 .. 0.74
   2 !    9.9   0.0    0.0002      0.32     168     235 ..     895     957 ..     891     963 .. 0.81
   3 !    5.7   0.0    0.0037         6     189     221 ..     958     990 ..     953     999 .. 0.85
   4 ?    1.2   0.0     0.089   1.5e+02     183     215 ..    1033    1065 ..    1012    1093 .. 0.85
   5 ?   -0.7   0.0      0.33   5.5e+02     184     217 ..    1252    1285 ..    1212    1294 .. 0.74
   6 ?   -2.2   0.0      0.98   1.6e+03      63     161 ..    1371    1403 ..    1356    1448 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.047
    Ge1_WD40 174 veeieegl..lkieehsliveaafspdGtalatasedGevkffqvy 217
                 +e++++++  + ++  + i +  fspdG  +a   e G ++    y
  CDO69809.1 858 SEKARNTTlaVSLSGATVIYSLDFSPDGKRIALGGEYGSIQILDTY 903
                 4444454400555666789999****************99987777 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0002
    Ge1_WD40 168 gsgelsveeieegllkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdG 235
                 gs+++    +   l  +e hs+ v+ afsp G  +   s+d +vk++ v      +  CLh W    G
  CDO69809.1 895 GSIQILDTYTGAQLQALEGHSKRVNVAFSPTGREILSGSADRMVKLWDVA-----SSACLHTWVEFSG 957
                 5555555555556667899****************************885.....678*****87766 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0037
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvylede 221
                 ++ + a+spdG   a+ ++dG+v +++v   ++
  CDO69809.1 958 EVHTVAWSPDGVFAAAGATDGTVTLWKVSSLEK 990
                 677889*********************976655 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.089
    Ge1_WD40  183 kieehsliveaafspdGtalatasedGevkffq 215 
                   +e++s +   a s dG  +a   e Gev ++q
  CDO69809.1 1033 TLEHTSPVYAVAASGDGSLIACGLESGEVVLWQ 1065
                  456778999999*******************99 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.33
    Ge1_WD40  184 ieehsliveaafspdGtalatasedGevkffqvy 217 
                  + + s + + +f+ d   +  as dG+++ + ++
  CDO69809.1 1252 VGHSSIVFTVIFTRDERHILSASYDGTIRRWTLH 1285
                  44556888999*****************998765 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 0.98
    Ge1_WD40   63 glkgevldlafahvsskillavdekgslfvykveeveskllvslllkveapietvvsesdrviWCPyipeedaeesdddeaskllvltrgdkaeiws 159 
                  + +++v+ laf+   +++l++ d ++++f+y++                                                                
  CDO69809.1 1371 NERNHVVSLAFSEDCTRALAGSD-EAQMFLYDL---------------------------------------------------------------- 1402
                  44444444444433333333322.233444433................................................................ PP

    Ge1_WD40  160 vd 161 
                   +
  CDO69809.1 1403 -T 1403
                  .3 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.019        30     106     160 ..     879     931 ..     864     937 .. 0.85
   2 !   12.6   0.0   5.8e-05     0.094      65     171 ..     920    1018 ..     909    1029 .. 0.75
   3 ?    1.8   0.0      0.11   1.8e+02      56     130 ..     994    1064 ..     986    1074 .. 0.68
   4 ?    2.1   0.0     0.098   1.6e+02     127     161 ..    1101    1135 ..    1093    1144 .. 0.79
   5 ?   -3.9   0.0       6.4     1e+04     137     164 ..    1298    1325 ..    1293    1326 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.019
                 EEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE.-TT--EEEE-TTSSEEEE CS
       eIF2A 106 iffspkgklvllaGfgnlaGeleiwdvkkkkkiakae.aanatlvewspdgryvlT 160
                 + fsp gk ++l+G  +  G+++i+d+ +  +++ +e +++ + v +sp+gr +l 
  CDO69809.1 879 LDFSPDGKRIALGG--E-YGSIQILDTYTGAQLQALEgHSKRVNVAFSPTGREILS 931
                 67999999999987..3.499*******99999888758999*********98875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.8e-05
                  EEE-TTSS-EEEEESSSSCEEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--.EEEE-TTSSE CS
       eIF2A   65 vaWspkskefaviyGkmpakvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanat.lvewspdgry 157 
                  va sp+++e  ++ G +++ v+l+d+    +  +    + +  t+ +sp g   ++a  g + G++ +w+v++++k a +++++ + ++ +spd  y
  CDO69809.1  920 VAFSPTGRE--ILSGSADRMVKLWDVAssaCLHTWVEFSGEVHTVAWSPDG---VFAAAGATDGTVTLWKVSSLEKTAVLRHEDRVrDITFSPD--Y 1009
                  677788887..689************74443333333457889********...567778999***************9999987636888886..6 PP

                  EEEEE-TTT-SSS- CS
       eIF2A  158 vlTattaprlrvdn 171 
                  ++ + +a     d 
  CDO69809.1 1010 FVVSGSA-----DK 1018
                  6655555.....55 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.11
                  EESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEE.S--EEEE-TTSSEEEEE-TTSSS-EEEEE CS
       eIF2A   56 lkkegpihdvaWspkskefaviyGkmpakvslfdlk.vkviskleeq.krNtiffspkgklvllaGfgnlaGeleiw 130 
                  l++e  + d++ sp   ++ v+ G ++++ +++dl+   +i++le+  +  ++  s  g l++ +G+   +Ge+ +w
  CDO69809.1  994 LRHEDRVRDITFSP---DYFVVSGSADKTCKIWDLErQVPIHTLEHTsPVYAVAASGDGSLIA-CGLE--SGEVVLW 1064
                  55566677777666...589***************6477899998751455555666665554.5555..3555555 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.098
                  EEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEE CS
       eIF2A  127 leiwdvkkkkkiakaeaanatlvewspdgryvlTa 161 
                  + +wdv++   +a+++++ a+ v +s +g +++ a
  CDO69809.1 1101 VTVWDVSRAVPLATLDNTYASGVAFSSNGAHIALA 1135
                  56888888888888888888888888888888765 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 6.4
                  EEEEEE-TT--EEEE-TTSSEEEEEE-T CS
       eIF2A  137 kiakaeaanatlvewspdgryvlTatta 164 
                   + k e+ + +++  s dgr++l ++t+
  CDO69809.1 1298 VLYKSEEDTFSSLAVSSDGRWILSCSTW 1325
                  5667777778888999999999999986 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0011       1.8      14     112 ..     894     991 ..     888    1042 .. 0.88
   2 !    9.6   0.0   0.00018      0.29      14      97 ..    1234    1325 ..    1226    1401 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
                   GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSS.EEEEEE-SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT- CS
  Cytochrom_D1  14 agkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwake.ivaevkiGlnarsvavSqddryvivgnYlPgqlvildaetL 109
                    g++++ld  +  +l+ le++    + + f++ gR ++  + D  v+l D+         v+  ++   va S d+ ++++g+   g++++     L
    CDO69809.1 894 YGSIQILDTYTGAQLQALEGHSK-RVNVAFSPTGREILSGSADRMVKLWDVASSAcLHTWVEFSGEVHTVAWSPDGVFAAAGAT-DGTVTLWKVSSL 988
                   599****************9876.78899************************9977778*********************984.466666666666 PP

                   -EE CS
  Cytochrom_D1 110 elv 112
                   e  
    CDO69809.1 989 EKT 991
                   655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00018
                    GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSS.....EEEEEE-SSEE...EEEEE--TTSEEEEEEEE CS
  Cytochrom_D1   14 agkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwake.....ivaevkiGlna...rsvavSqddryvivgnYl 97  
                    ++++ + + ++ + + +  ++  +  +++f++d+R+++ ++ Dg++    L+a       +  ev   ++     s+avS d+r+++  + +
    CDO69809.1 1234 NHSISVWETKTGQLIGNYVGHSSIVFTVIFTRDERHILSASYDGTIRRWTLHAPVgenaqMSSEVLYKSEEdtfSSLAVSSDGRWILSCSTW 1325
                    68888888888888888889999999999***********************8765566789999777664223589*********998776 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00024       0.4       3     110 ..     876     986 ..     874    1006 .. 0.68
   2 ?    2.3   0.0     0.054        88      43      97 ..     957    1012 ..     918    1067 .. 0.45
   3 ?   -1.7   0.0       0.9   1.5e+03       2      33 ..    1039    1070 ..    1038    1086 .. 0.84
   4 ?    2.3   0.0     0.051        83      19      70 ..    1232    1284 ..    1225    1300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00024
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillsllenee.evenekieedistvkviddkl..liG 98 
                 iYs+d+s++g+ i+ Gg+   +++l++ ++ + + +e+ +  v  +    +  il ++ D ++ l ++  +       +   ++ tv    d +  + G
  CDO69809.1 876 IYSLDFSPDGKRIALGGEYGSIQILDTYTGAQLQALEGHSKRVNVAFSPTGREILSGSADRMVKLWDVASSAcLHTWVEFSGEVHTVAWSPDGVfaAAG 974
                 9*******************************9999999888776666666777777777777666666666222335556666666665555422346 PP

   WD40_like  99 tnkGsiyvfskd 110
                 ++ G++ +++  
  CDO69809.1 975 ATDGTVTLWKVS 986
                 666666666655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.054
   WD40_like   43 dSvifvklldddlilv.vtlDGtillslleneeevenekieedistvkviddklli 97  
                    v  v    d ++   ++ DGt++l +++  e++   + e+ +  ++   d +++
  CDO69809.1  957 GEVHTVAWSPDGVFAAaGATDGTVTLWKVSSLEKTAVLRHEDRVRDITFSPDYFVV 1012
                  55555544444444321344555544443333322222222222222223333333 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.9
   WD40_like    2 eiYsidiskkgslilyGgkddkctvlklesle 33  
                  ++Y++  s +gsli+ G ++ ++ + +  s++
  CDO69809.1 1039 PVYAVAASGDGSLIACGLESGEVVLWQKSSGQ 1070
                  79**************9999888887766665 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.051
   WD40_like   19 gkddkctvlkleslesvsivesfedSvifvk.llddd.lilvvtlDGtillsll 70  
                  g ++ + v ++++++++    + + S++f+  +  d+ +il ++ DGti   +l
  CDO69809.1 1232 GSNHSISVWETKTGQLIGNYVGHS-SIVFTViFTRDErHILSASYDGTIRRWTL 1284
                  677888888888888888887765.5666550555557***********76655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.7e-06     0.006      25     150 ..     308     427 ..     300     448 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.7e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea.sr 118
                 +l+ +   +G GK++l+++++  +++d    g     g +  + ++ ++s ++++  +  +  +l+        ++++++l+++++a p +  ++  ++
  CDO69809.1 308 SLLWIKASAGAGKTTLAQTVA-TWCADhqflG-----GAFFCS-REGERSDILRIV-T-NIAVELAH-----RCDDFHDALLATTKANPYIQTSQVsQQ 392
                 677888899************.6888845552.....444443.222223466666.3.34444444.....477777777777775555555555566 PP

      AAA_16 119 llellkrll.allsrderp..lvlvlDdlqwadea 150
                 l  ll + l + +++++ p  lv+v+D l+  d++
  CDO69809.1 393 LKTLLVEPLrVVIAKGSFPknLVIVVDALDECDDE 427
                 666666666555555444455*********99984 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-06    0.0077     149     211 ..     382     452 ..     126     456 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.7e-06
  KAP_NTPase 149 plkklqteveelladmektLda......lqkrlVvviDdLDrcetee.vlqlleavkl.lfslkpvvfila 211
                 p ++ ++  ++l++ +++ L+         k lV+v+D+LD c++e+ v ++l+a+ l +++l p +fi+ 
  CDO69809.1 382 PYIQTSQVSQQLKTLLVEPLRVviakgsFPKNLVIVVDALDECDDEKpVSTVLQAISLyIAELAPLKFIIT 452
                 44444444444555555555555555656689************997467899**9963677799999985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-05     0.022       3     117 ..     305     441 ..     303     458 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsstsskdllrellralglelka....erlsseelleale 83 
                 +++++l + + +G+GKTtl+++++ +   +++                 + ++ + v+l++ +  +d+  +ll  ++ +         ++++ ll    
  CDO69809.1 305 SHRSLLWIKASAGAGKTTLAQTVATWCADHQFLGGaffcsregersdilRIVTNIAVELAHRC--DDFHDALLATTKANPYIqtsqVSQQLKTLL---- 397
                 588999999*****************9655555557777777743333333333355555555..455444444444433335444333333333.... PP

      AAA_22  84 qalrarav..........ielliiDEaqhlr..s..eealeeLrslln 117
                     +  +            ++++D  +  +  +   ++l+ + sl+ 
  CDO69809.1 398 ---VEPLRvviakgsfpkNLVIVVDALDECDdeKpvSTVLQAI-SLYI 441
                 ...3333333344556888889998888875542445555555.4444 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0085        14      16      24 ..     881     889 ..     879     889 .. 0.95
   2 ?    3.6   0.0     0.041        67       8      20 ..     956     968 ..     952     972 .. 0.80
   3 ?   -2.8   0.1       4.1   6.7e+03      13      19 ..    1002    1008 ..    1001    1008 .. 0.86
   4 ?    1.1   0.1      0.25     4e+02      15      24 ..    1311    1320 ..    1308    1324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0085
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 fSPDGkr+a
  CDO69809.1 881 FSPDGKRIA 889
                 9*******7 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.041
                 SS.EEEEEE-TTS CS
        PD40   8 pgnegaPsfSPDG 20 
                 +g+ +  ++SPDG
  CDO69809.1 956 SGEVHTVAWSPDG 968
                 66778889***** PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.1
                  EEEE-TT CS
        PD40   13 aPsfSPD 19  
                  +++fSPD
  CDO69809.1 1002 DITFSPD 1008
                  589***9 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.25
                  EE-TTSSEEE CS
        PD40   15 sfSPDGkrla 24  
                  ++S DG+++ 
  CDO69809.1 1311 AVSSDGRWIL 1320
                  68******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 9494.11
//
Query:       CDO69810.1  [L=628]
Description: hypothetical protein BN946_scf184803.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4469.20
//
Query:       CDO69811.1  [L=171]
Description: hypothetical protein BN946_scf184803.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-08   35.2   0.0    1.5e-08   34.9   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.2e-08   34.1   0.0    4.1e-08   33.8   0.0    1.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    8.6e-08   32.1   0.1    1.4e-07   31.5   0.1    1.3  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.6e-12   1.5e-08      75     178 .]      33     135 ..       4     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.6e-12
       HAD_2  75 k..kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakka 171
                 k  + +   ++  + L  L + +  +g  +++s + + ++ ++ ++    dv+ ++e  +  KPdp+v++ a++ l + +e++ +v  +++D+ aa k 
  CDO69811.1  33 KfwHALDGWPDSSKGLYRL-KGKAIVGTLSNGSVRLLVNMAKHADL--PWDVVFSGEILGSYKPDPQVYLGAIRYLSVPPEKCAMVAAHIHDLRAAAKH 128
                 2444455567778888888.77788899999999999999999887..89************************************************* PP

       HAD_2 172 gikviav 178
                 g+k++ v
  CDO69811.1 129 GMKTVYV 135
                 ***9975 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   6.8e-12   4.1e-08     104     210 .]      25     129 ..       5     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 6.8e-12
                 TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyf.daviasdietvakpspegkvaaireLqgkpeevamVGDgvn 201
                 + +  +++++ + l  +p+  + +++Lk + i v+ l++++ +     a++++     d+v++++i +  kp+p+ ++ air L ++pe++amV   + 
  CDO69811.1  25 DTKRQELVKFWHALDGWPDSSKGLYRLKGKAI-VGTLSNGSVRLLVNMAKHAD--LPwDVVFSGEILGSYKPDPQVYLGAIRYLSVPPEKCAMVAAHIH 120
                 4566667777778889************9999.******************99..666***************************************** PP

                 HHHHHHHTT CS
                 xxxxxxxxx RF
   Hydrolase 202 DaaalaaAg 210
                 D+ a+a+ g
  CDO69811.1 121 DLRAAAKHG 129
                 *****9876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   2.3e-11   1.4e-07       4      75 .]      92     167 ..      90     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.3e-11
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-T.....TTHHHHHHHHT---SEEES- CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrp.....edleepehkptyvaddlaea 75 
                     KP p +y  a + l+++pe++ m+     +D+++A ++G+k+v V++  ++       +++++  + ++v+d+l+e+
      CDO69811.1  92 KPDPQVYLGAIRYLSVPPEKCAMVAAH-IHDLRAAAKHGMKTVYVRRSTEDVgvkeqVKRKADGGEVDVVVDSLEEL 167
                     9**************************.******************9665442221144344556888899999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1305.38
//
Query:       CDO69812.1  [L=639]
Description: hypothetical protein BN946_scf184803.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-58  197.2   1.0      5e-43  147.2   0.2    3.5  4  HSP70         Hsp70 protein
    2.4e-09   36.5   0.0    7.8e-09   34.8   0.0    1.8  1  MreB_Mbl      MreB/Mbl protein
  ------ inclusion threshold ------
       0.85    8.5  10.2        1.6    7.6  10.2    1.3  1  Radial_spoke  Radial spokehead-like protein
        2.5    7.9   6.9        4.7    7.0   6.9    1.4  1  Myc_N         Myc amino-terminal region
        4.8    6.8   7.5         11    5.7   7.5    1.5  1  FAM176        FAM176 family
        5.7    6.6   9.3         11    5.7   9.3    1.4  1  DUF4637       Domain of unknown function (DUF4637)
        7.9    5.0   7.3       0.55    8.8   0.4    2.0  2  Hamartin      Hamartin protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   3.4e-19   8.7e-16       1     102 [.      21     123 ..      21     139 .. 0.80
   2 !  147.2   0.2     2e-46     5e-43     107     376 ..     158     436 ..     141     454 .. 0.89
   3 ?   -6.4   8.5       6.1   1.6e+04     493     548 ..     538     593 ..     529     613 .. 0.64
   4 ?   -0.5   0.0       0.1   2.6e+02     464     493 ..     601     630 ..     587     636 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 3.4e-19
                 EEEEEEXSSEEEEEEE.ETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETT..SB CS
       HSP70   1 viGiDLGttnsvvavm.eggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkken..gk 96 
                 v+Gi  G+ ++ +av+ ++g+++ iane g+r     +aF+ +e ++G++Ak+q v+n++nt++ ++ l+G+kfs+  + +++++ +  v ++++  ++
  CDO69812.1  21 VVGINFGNSYASIAVLtKEGGADCIANEDGERQIACAIAFHGEELYIGNQAKQQLVKNSQNTITGFRNLLGKKFSQ--ISANSPSTSAPVIQHPDipDE 117
                 79*************8356789*****************************************************9..555555555555554432255 PP

                 EEEEEE CS
       HSP70  97 avveve 102
                 +  +v+
  CDO69812.1 118 PAYKVQ 123
                 555555 PP

  == domain 2  score: 147.2 bits;  conditional E-value: 2e-46
                 EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEXSSXEEEE CS
       HSP70 107 kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd....kernvlvyDlGggtfdvS 201
                  +t +++++ +Lk l + ae++lgkkv+ avit+P++f+ +q+ a   A++ AG+ v  ++ e+ Aa++     +       +r+ l++DlG +    S
  CDO69812.1 158 ILTVSEVTTIFLKSLIKSAEDFLGKKVQGAVITIPTWFEQEQKDALEKAANDAGITVFQLLEEAGAATVCTTTGSIPeglsVDRTQLIVDLGASGLSLS 256
                 67889**************************************************************9976443333457789999************* PP

                 EEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXG.......GGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEE CS
       HSP70 202 ilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidl.......skdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekl 293
                 +l+l +G  + +aT +D+++GG+  D++lv+++++ef kk++  l       ++d++a  +l+ a e+ K+++S+ +  +++ ++e++++ g d++ ++
  CDO69812.1 257 LLSLRDGLAHSLATLFDHTVGGDAIDDKLVKFFAKEFTKKTKTPLnvcpatdAQDRRAEAKLRLALEHTKRTISA-SPGSATCSVESLKD-GLDFTATI 353
                 *************************************9999875522333335899*******************.6999********99.******** PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHC CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvls 376
                 +R +f+  v+ + +++ + v+++++ a+l+  ++de+v vGGs+ +P + e++   f  +  +   +  +v  GA   + +ls
  CDO69812.1 354 TRLRFDMEVRSIYDHVYSKVKEVVSAAGLDLYDVDEIVYVGGSASLPGLDEALTLGFAESVVTPFKQGTVVGGGAGDPTTILS 436
                 *****************************************************999999999988888888777765555554 PP

  == domain 3  score: -6.4 bits;  conditional E-value: 6.1
                 EEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 493 eitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee 548
                  +++e+ +  ++e++e   ++ ee +ee+++++e  e++ e e+l++sl  + +++
  CDO69812.1 538 GVKVEKIKLPKAEDEEGAPEEGEEEEEEEEEEEEVKEKTVEKESLLTSLSFTAQHA 593
                 45555555555666666666667777777777777777777777777665544444 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.1
                 CSEEEEEEEEETTSCEEEEEEETTTCCEEE CS
       HSP70 464 vpqieVtfdidanGiltvsakdketgkeee 493
                 + ++eVt ++ +nG l+vsa + + + + e
  CDO69812.1 601 TTRLEVTAKVSENGALEVSACEVSASGKGE 630
                 6789****************9986554444 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0     3e-12   7.8e-09      72     298 ..     163     411 ..     152     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 3e-12
                 HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-...-..TTSSS-EEEEEE-SS-EEEEEEETT CS
    MreB_Mbl  72 evaeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGagl...p..veepsgnmvvdiGggttevavislg 165
                 ev+  +lk++ik +++    + +  vi++P+  ++ ++ A+++aa++aG +  +l+ee+ aA + +     p  ++  + +++vd+G+   +++++sl 
  CDO69812.1 163 EVTTIFLKSLIKSAEDFLGKKVQGAVITIPTWFEQEQKDALEKAANDAGITVFQLLEEAGAATVCTTTgsiPegLSVDRTQLIVDLGASGLSLSLLSLR 261
                 788899********9998999999**************************************9865431112224456789****************97 PP

                 E.....EEEEEEES-SHHHHHHHHHHHHHHHHS......EE--HHH.HH....HHHHHH-BSS--HHHH....EEEEEEEETTTTCEEEEEEEHHHHHH CS
    MreB_Mbl 166 g.....ivtsksvrvaGdeldeaiikyirkkyn......lliGert.ae....kikieigsavkeeeee....kmeikGrdlvtglpkevevsseevre 244
                 +     + t     v+Gd++d++++k+  k+++      l +  +t a+    + k++++  +++++ +    + + +   l  gl  +++++  +   
  CDO69812.1 262 DglahsLATLFDHTVGGDAIDDKLVKFFAKEFTkktktpLNVCPATdAQdrraEAKLRLALEHTKRTISaspgSATCSVESLKDGLDFTATITRLRFDM 360
                 62111133444568*************999886333333444433313311113344444333333322234555666666777777777777777777 PP

                 HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS CS
    MreB_Mbl 245 alkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetg 298
                  +++   ++ ++vkev  ++  +L  d+    iv +GG+a l gld+ l+  + 
  CDO69812.1 361 EVRSIYDHVYSKVKEVVSAAGLDLY-DV--DEIVYVGGSASLPGLDEALTLGFA 411
                 7777777777777777777776664.44..459999***********9976555 PP

>> Radial_spoke  Radial spokehead-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.2   0.00061       1.6     359     410 ..     553     607 ..     530     619 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00061
  Radial_spoke 359 k..eeeeeeeeeeeeeeeeeeeeepEtgpplltplseDasiddvpp..Wtvrlssk 410
                   +   ee eeeeeeeeeeee +e +  +  +llt+ls  a++ + +   Wt+rl  +
    CDO69812.1 553 EgaPEEGEEEEEEEEEEEEVKE-KTVEKESLLTSLSFTAQHAQQKNgrWTTRLEVT 607
                   1323333333333332333333.3344568999999987666665566**997655 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.9    0.0018       4.7     232     275 ..     550     592 ..     529     609 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
       Myc_N 232 seedvlsesdeeeeeeeeeeeeidVVtvekrrssskrkevstlt 275
                 ++e+   e+ eeeeeeeeeeee+   tvek    ++  + +  +
  CDO69812.1 550 EDEEGAPEEGEEEEEEEEEEEEVKEKTVEKESLLTS-LSFTAQH 592
                 45555667889999999*************775443.3333333 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.5    0.0042        11      65     134 ..     549     618 ..     533     626 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0042
      FAM176  65 sekasededeeeeeeeedsseseaeeelsefertlsvnvftsaeelerAqRlEeReriirEIWrngqpdi 134
                 +e+++   +e eeeeee+++e+e++e++ e e+ l+   ft+  + ++  R   R  +   +  ng +++
  CDO69812.1 549 AEDEEGAPEEGEEEEEEEEEEEEVKEKTVEKESLLTSLSFTAQHAQQKNGRWTTRLEVTAKVSENGALEV 618
                 2222333344444445555555556666777777788889999998888888888888888888888887 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.3    0.0043        11       1      76 [.     543     618 ..     543     628 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0043
     DUF4637   1 ktPlwkkeleeleareveeeeaeeeseeedeeedraeeesaaegeeesreaeeaegrekgsvsysPlrqessaqev 76 
                 k+ l k e ee   +e eeee+eee+eee +e+  ++e   +  + ++++a++++gr    +  +    e  a ev
  CDO69812.1 543 KIKLPKAEDEEGAPEEGEEEEEEEEEEEEVKEKTVEKESLLTSLSFTAQHAQQKNGRWTTRLEVTAKVSENGALEV 618
                 5677788888888888888887777766666655555555667778999999999996666655555555555555 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.4   0.00021      0.55     306     405 ..      79     176 ..      51     224 .. 0.71
   2 ?   -0.9   1.6      0.19   4.9e+02     451     493 ..     546     584 ..     522     633 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00021
    Hamartin 306 lsgtspavlsvessrskddeislWSPssvcgmttppsspgivpttelelsssasllsskvsstpeaagkatpetTPakssrklppslsesavvvalpas 404
                 ++ t + +++   ++ +++  s+ SPs+++ +   p  p   + +   l+++ s l+++++ tp+a++ atp + P+   r l  s +      +l +s
  CDO69812.1  79 SQNTITGFRNLLGKKFSQI--SANSPSTSAPVIQHPDIPDEPAYKVQILQPAPSPLQTSATNTPAASNTATPRSEPVPAERILTVSEVTTIFLKSLIKS 175
                 3333333333333333333..679************99977776666678888889999******************9998765555555555555555 PP

    Hamartin 405 s 405
                 +
  CDO69812.1 176 A 176
                 4 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
    Hamartin 451 Lsdvikelleaesedsvekeeeeaaisqelseiteekketlvs 493
                 L++ ++e+    + +  e+eeee+++++e++e t ek e+l+ 
  CDO69812.1 546 LPKAEDEE---GAPEEGEEEEEEEEEEEEVKEKTVEK-ESLLT 584
                 44444444...33334455555566667776666666.33222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      773  (0.0431145); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.43
# Mc/sec: 4447.90
//
Query:       CDO69813.1  [L=748]
Description: hypothetical protein BN946_scf184803.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-44  150.7   0.0    8.4e-44  150.0   0.0    1.3  1  UCH         Ubiquitin carboxyl-terminal hydrolase
    1.6e-25   88.6   2.5    3.4e-12   46.0   0.0    2.5  2  UBA         UBA/TS-N domain
    3.2e-24   84.4   0.3    5.9e-24   83.6   0.3    1.5  1  zf-UBP_var  Variant UBP zinc finger
    7.4e-17   61.9   0.0    3.3e-15   56.5   0.0    3.0  1  UCH_1       Ubiquitin carboxyl-terminal hydrolase
    4.6e-06   26.9   1.9    1.9e-05   24.9   1.9    2.0  1  zf-UBP      Zn-finger in ubiquitin-hydrolases and other prote
     0.0045   17.4   0.5        2.4    8.7   0.1    2.9  2  zf-C2HE     C2HE / C2H2 / C2HC zinc-binding finger
  ------ inclusion threshold ------
      0.068   13.0   0.6       0.13   12.1   0.0    1.7  2  UBA_4       UBA-like domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   3.3e-47   8.4e-44       1     256 [.     255     744 ..     255     745 .. 0.88

  Alignments for each domain:
  == domain 1  score: 150.0 bits;  conditional E-value: 3.3e-47
                 -EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell............................. 69 
                 tGlsNlGn+Cym sv+Q Lfs+p +r +y  + +++ ++ r++   n          + +++ +l   ll                             
  CDO69813.1 255 TGLSNLGNSCYMASVVQTLFSLPAFRqRYYPTAASHWETCRESLPAN---------CVDCQMHKLADGLLsgryshprphqsnspsapketnplahdtp 344
                 7*************************777766544444444443322.........2444444444444433334444322222222222212222222 PP

                 .SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE...................... CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
         UCH  70 .kskskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks...................... 145
                     ++ v P  +k+ ++k +++f +++qqDa+Ef+++l+  l ++ ++         +   +++ +t++fe+ +++                      
  CDO69813.1 345 tPVFQEGVRPIGFKSLIGKGHEEFMTMRQQDAEEFFTHLITVLRRNAKK---------AGVDERNEPTQIFEFGMEQrlecgeckrvryrvdemdtlsv 434
                 5444558999*************************************99.........5667778899******************************* PP

                 ..................................................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S..EEE-GGGBSS- CS
                 ..................................................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxxxxx RF
         UCH 146 ..................................................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe..eldlssylaee 191
                                                                   + +l ++P++L+ih k+f+  ++ + Kl+ +v  pe  el+l++yl ++
  CDO69813.1 435 pvparekgkdaegktlyedvqlkecldivtgtealeyqcpacqkkviatkQSRLATFPQVLVIHAKKFQLVNWvPAKLDIPVILPEsdELQLDEYLGRG 533
                 **********************************************************************8889***********888*********** PP

                 BTTS-TCS-B......................................................................................... CS
                 xxxxxxxxxx......................................................................................... RF
         UCH 192 kkkkteekkk......................................................................................... 201
                  +++++e ++                                                                                         
  CDO69813.1 534 LQPDETELPNdeaaapglpqfneaamaqleamgfptircqkallatgnndaeaamewlfahmedpdidapiqpassggagvpepsaeqvsmladmgftp 632
                 ****999999***************************************************************************************** PP

                 ........................................................EEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE- CS
                 ........................................................xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 202 ........................................................YeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevk 243
                                                                         Y+L a+++H+G s++sGHYva+i+  +++ W+ ++De+v + +
  CDO69813.1 633 aqarkalretggnaeravewlfshpddagedtpsgsasggsklqkgpggsselparYRLKAFISHKGpSVHSGHYVAHIR--TDEGWVLFNDEKVVKAD 729
                 ********************************************************************************..7888************* PP

                 HHCCCTT...CEEEEE CS
                 xxxxxxx...xxxxxx RF
         UCH 244 eeeevls...sayiLf 256
                 +e +v++    ay+++
  CDO69813.1 730 AE-SVRElkkLAYLYV 744
                 87.6766777999987 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.9   2.7e-14   6.9e-11       2      37 .]     555     591 ..     554     591 .. 0.98
   2 !   46.0   0.0   1.3e-15   3.4e-12       2      37 .]     618     653 ..     617     653 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2.7e-14
                 CHHHHHHHHHTTS-HHHHHHHHHHTTT.SHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgn.NeErAveyL 37 
                 +e+a ++L +MGF+  ++++AL atgn + E+A+e+L
  CDO69813.1 555 NEAAMAQLEAMGFPTIRCQKALLATGNnDAEAAMEWL 591
                 99**********************************9 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 1.3e-15
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                  +e+++ L +MGF+++++++ALr tg+N ErAve+L
  CDO69813.1 618 SAEQVSMLADMGFTPAQARKALRETGGNAERAVEWL 653
                 689********************************9 PP

>> zf-UBP_var  Variant UBP zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.3   2.3e-27   5.9e-24       3      64 .]      14      79 ..      12      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 2.3e-27
  zf-UBP_var  3 vpsssdkVyKdECvycFdtpesedGlyvcLkcFlgfck....khaekhaektghpvylnikrtkke 64
                 p+ s+ V+++EC++cFd+++s+ G++vcL+cF+g+c     +ha++h++ktgh+++ln++r+ k+
  CDO69813.1 14 PPRLSQSVHREECTQCFDNQDSPLGIDVCLTCFNGGCLdkdrHHARTHVAKTGHAFALNVRRRLKP 79
                5899*********************************999*9********************9886 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   1.3e-18   3.3e-15       2     320 .]     256     725 ..     255     725 .. 0.74

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 1.3e-18
                 xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr....nlalshlak..eckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeete... 91 
                 GL n  + +Y+ s++Q+l+ +p +r     +a sh ++  e    +c+ c++  l d l  ++ ++ + +  + + s  +e + l      ++ t    
  CDO69813.1 256 GLSNLGNSCYMASVVQTLFSLPAFRqryyPTAASHWETcrESLPANCVDCQMHKLADGLLSGRYSHPRPHQSN-SPSAPKETNPLAH----DTPTPvfq 349
                 8999999*****************954433567777444456666***********99999996655544322.2222332333333....22222445 PP

                 ............xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
       UCH_1  92 ............kssaislssliq.sfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP.kpsnekkeak 176
                              + ++++ ++ q    +f+++ +    +++kk    e ++ +q++++ +e++++c +C++ + r + + +l++  P +++ + +++ 
  CDO69813.1 350 egvrpigfksliGKGHEEFMTMRQqDAEEFFTHLITVLRRNAKKAGVDERNEPTQIFEFGMEQRLECGECKRVRYRVDEMDTLSVPVPaREKGK-DAEG 447
                 55666666666644555555555525888888888887777777889999**********************9988887777766556543222.2222 PP

                 xxx..xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
       UCH_1 177 vtf..asilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt.................................. 236
                 +t+  +  lk+ l+    ++  ++ C+ C+++   ++++++  +P+vL+++ak ++      w                                    
  CDO69813.1 448 KTLyeDVQLKECLDIvtgTEALEYQCPACQKKVIATKQSRLATFPQVLVIHAKKFQL---VNWVPakldipvilpesdelqldeylgrglqpdetelpn 543
                 3332233344444433225777899****************************8744...346666778888888999999999999999999999999 PP

                 ................................................................................................... RF
       UCH_1 237 ................................................................................................... 236
                                                                                                                    
  CDO69813.1 544 deaaapglpqfneaamaqleamgfptircqkallatgnndaeaamewlfahmedpdidapiqpassggagvpepsaeqvsmladmgftpaqarkalret 642
                 999999999999999999999999999999999999999999999999999999999999999999999988888887766665544444444444444 PP

                 .xxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 237 .knwlpleiklsldedknl........................eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppes 310
                                   +                        +  +k ++ +  +++  + Y L +++ h g s +sgh+v++++           ++
  CDO69813.1 643 gG----------------NaeravewlfshpddagedtpsgsaSGGSKLQKGPGGSSELPARYRLKAFISHKGPSVHSGHYVAHIRT----------DE 715
                 40................15566666666666666667778887778888888899999**************9999*********5..........35 PP

                 xxxxxxxxxx RF
       UCH_1 311 qWylFNDflV 320
                  W+lFND +V
  CDO69813.1 716 GWVLFNDEKV 725
                 8******766 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   1.9   7.3e-09   1.9e-05       1      46 [.      26      74 ..      25      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.3e-09
                -TTTH--..SS..EEEETTT--EEE-TTTT-HHHHHHHHH---EEEETT CS
      zf-UBP  1 CseCnse.nkn..lWlCLkCghvgCgrksnghalkHyeetrHplavdls 46
                C++C  + ++   + +CL+C + gC +k  +ha++H+ +t+H++a++++
  CDO69813.1 26 CTQCFDNqDSPlgIDVCLTCFNGGCLDKDRHHARTHVAKTGHAFALNVR 74
                6777655233233446*****************************9975 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00094       2.4      24      44 ..     118     138 ..      96     146 .. 0.69
   2 !    5.8   0.1    0.0074        19       3      45 ..     378     421 ..     376     425 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00094
     zf-C2HE  24 lseeqskelilktpLkCtrCg 44 
                  +e++ +++  kt LkC++C+
  CDO69813.1 118 VEEREDEKYEYKTVLKCWKCD 138
                 33444444555*********8 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0074
     zf-C2HE   3 eFFvpledlp.eelekdgeieslseeqskelilktpLkCtrCga 45 
                 eFF +l  ++ ++ +k+g  e+++ +q  e  +++ L+C  C++
  CDO69813.1 378 EFFTHLITVLrRNAKKAGVDERNEPTQIFEFGMEQRLECGECKR 421
                 79999999982333333444888999999999**********94 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       4.5   1.2e+04      24      33 ..     579     588 ..     575     596 .. 0.64
   2 ?   12.1   0.0     5e-05      0.13      12      39 ..     629     656 ..     626     660 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.5
       UBA_4  24 annWdLerAi 33 
                   n+d e+A+
  CDO69813.1 579 TGNNDAEAAM 588
                 5566777765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5e-05
       UBA_4  12 GadeekArqlLeannWdLerAislyFds 39 
                 G+++++Ar+ L+ ++++ erA++  F +
  CDO69813.1 629 GFTPAQARKALRETGGNAERAVEWLFSH 656
                 899*******************866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4846.55
//
Query:       CDO69814.1  [L=420]
Description: hypothetical protein BN946_scf184803.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-87  292.5   2.9    2.5e-87  292.5   2.9    1.5  2  NAP          Nucleosome assembly protein (NAP)
  ------ inclusion threshold ------
       0.12   12.4   4.1          5    7.2   1.0    2.6  2  Tom5         Mitochondrial import receptor subunit or translo
       0.44   10.3  13.3       0.98    9.1  13.3    1.5  1  Cwf_Cwc_15   Cwf15/Cwc15 cell cycle control protein
       0.48    9.2  10.1        1.3    7.8   5.3    2.1  2  Treacle      Treacher Collins syndrome protein Treacle
        1.9    7.7  13.1        3.4    6.9  13.1    1.4  1  BUD22        BUD22


Domain annotation for each model (and alignments):
>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5   2.9   7.1e-91   2.5e-87       2     270 .]      90     356 ..      89     356 .. 0.93
   2 ?   -5.6   2.6         5   1.8e+04     231     238 ..     376     383 ..     363     394 .. 0.37

  Alignments for each domain:
  == domain 1  score: 292.5 bits;  conditional E-value: 7.1e-91
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--S.............................--SSSSTTSTTHHHHHHHTSH CS
         NAP   2 rveaLkklqkelskleaefqeevlelekkyaalykplyekrseIingesepteeeveakedekeeeeeeeekeeekeeekkeeakgipeFWltvlknve 100
                 +veaLk +q ++ +l++++++e+lelekky +l kply++r+eIi+g+++pt ee+ea+e+++    +e+ + +   ++     +gipeFWlt+l+++ 
  CDO69814.1  90 NVEALKGVQAKQIELQNQYKRECLELEKKYLDLQKPLYDRRREIISGTAQPTPEEIEAGEQQSI---KEDPDYTPLPKDVPPALSGIPEFWLTALRTHV 185
                 79******************************************************99965433...34567777888889999*************** PP

                 HHHTT--HHHHHHHTTEEEEEEEE-----.--EEEEEEEE-S-SSB--SEEEEEEEE----.........----EEEEEE----B-TT--TTS------ CS
         NAP 101 llaeliqerDepiLkhLkdirveyllske.kegFtleFeFdeNpyFtnevLtktyilksev.dkedpfiydgpeiekaegckIdWkegkdvtvktvkkk 197
                  +ae+i++rD ++Lk L+dir+eyl ++e k+gF+l F F++N+yF+nevL+kty +++ev +++d f+yd     +a g++I+Wke+kd+t++++ kk
  CDO69814.1 186 GFAEIITDRDVDALKSLTDIRIEYLPTTElKPGFKLRFFFAPNDYFENEVLEKTYLYQEEVgYTGD-FMYD-----RAIGTEIKWKEDKDLTKEFEVKK 278
                 ************************988889*******************************66666.*9*9.....9********************** PP

                 ----...-------------GGGGS--B-----.....---.-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHT. CS
         NAP 198 qknkktketrtvtkkvpkeSFFnfFsppkvpee.....eee.eeeeeeeleelleadyeigealkdkiiPkAveyFtge 270
                 q+nk+t++tr v+k  ++ SFFnfF+pp+ p+e     + + +e+e ee+ee+le+dy++ge+lk+kiiP+A++yFtg+
  CDO69814.1 279 QRNKNTNRTRLVRKARSTASFFNFFNPPQPPSEamieaG-DiDEDELEEIEEKLEMDYQLGEDLKEKIIPRAIDYFTGK 356
                 *******************************99555443.1588999999***************************95 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 5
                 -------- CS
         NAP 231 eeeeeeee 238
                 e++eee++
  CDO69814.1 376 EDDEEESD 383
                 11111111 PP

>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0014         5       8      22 ..     139     153 ..     135     155 .. 0.85
   2 ?    5.6   0.1    0.0047        17       2      17 ..     303     317 ..     300     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0014
        Tom5   8 qpSeeEikaaeaeAr 22 
                 qp++eEi+a+e+++ 
  CDO69814.1 139 QPTPEEIEAGEQQSI 153
                 79**********975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0047
        Tom5   2 FgggPpqpSeeEikaa 17 
                 F  +P++pSe+ i+a+
  CDO69814.1 303 FN-PPQPPSEAMIEAG 317
                 66.8889******987 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  13.3   0.00027      0.98      49     144 ..     265     392 ..     253     396 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
                 HHHS-HHHHHHHHHHHHHHHHH-----------............................--------------------------............ CS
  Cwf_Cwc_15  49 lekrdlraeLeeaeaeakakkrkkaeleaeeee............................ekekkeeeeeeeeeeakrrkeellee............ 107
                 +e++dl +e e + +++k+++r++   +a +++                            e  +++   e + +           e            
  CDO69814.1 265 KEDKDLTKEFEVKKQRNKNTNRTRLVRKARSTAsffnffnppqppseamieagdidedeleE-IEEKL--EMDYQLG---------Edlkekiipraid 351
                 5899*******999999999988776666666689******999988776655554432210.11111..1111111.........1233344444666 PP

                 .....---------------------------.-------- CS
  Cwf_Cwc_15 108 ...areidaddedseeeeeeeeeesdddsdsd.sddddded 144
                     ++++ +d d+e++ e+ e+++dd+++sd +++d+ded
  CDO69814.1 352 yftGKALEYEDFDDEDDFEDIEDDEDDEEESDeDESDSDED 392
                 66413444444444333333333333333333033333333 PP

>> Treacle  Treacher Collins syndrome protein Treacle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2    0.0047        17     282     346 ..       3      60 ..       1     107 [. 0.63
   2 ?    7.8   5.3   0.00036       1.3      19      43 ..     374     398 ..     369     416 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0047
     Treacle 282 akvapvrVgtpapwKagtvtssAkasspavargaqrpeedSsSseeseseeEeapaaavgqaksv 346
                 ++++  +V+  ap   +t      + +p+ a g  rp    +  e++e+eeEe+paa+ g+ + +
  CDO69814.1   3 SHIPINQVDPTAPTPQNTPL----THAPI-AAGLSRPTV-PDITEDNEQEEEETPAAS-GNIQQA 60 
                 55666666666666655332....23344.778889988.667788888899999988.444443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00036
     Treacle  19 kpeedsesSsEedSdseeetpaakt 43 
                   e+d e+S+E++Sds+e++pa + 
  CDO69814.1 374 DDEDDEEESDEDESDSDEDVPARRR 398
                 4566777777777777777777654 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  13.1   0.00096       3.4     180     264 ..     291     400 ..     253     419 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00096
       BUD22 180 d....................eekeeseddeeeeeededdedaee.........deedeeaeerelaqydg.lla.sddededeyneetdeesseesds 247
                                      ++ e+ + de+e ee e      e         ++ +e+ + r++  + g +l+ +d +ded+ ++ +d+e++ee+++
  CDO69814.1 291 RkarstasffnffnppqppseAMIEAGDIDEDELEEIE------EklemdyqlgEDLKEKIIPRAIDYFTGkALEyEDFDDEDDFEDIEDDEDDEEESD 383
                 01222222344555544443322222222222222222......1222234555445556666666666665555755555554456666666666666 PP

       BUD22 248 sdssesasesesessek 264
                 +d+s+s+++ + +   +
  CDO69814.1 384 EDESDSDEDVPARRRGP 400
                 66666655555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 2975.63
//
Query:       CDO69815.1  [L=949]
Description: hypothetical protein BN946_scf184803.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-13   50.3  11.3    4.4e-13   49.3  11.3    1.4  1  zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repres


Domain annotation for each model (and alignments):
>> zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repressor R1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3  11.3   2.4e-17   4.4e-13       6      77 ..     626     698 ..     622     712 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.4e-17
  zf-4CXXC_R1   6 gttChqCrqktletktsCka.....keCksaklkfCekClknRygeeveevaakkeWvCPkCrgiCncslcrkkkgl 77 
                   t ChqCr+kt  +k++C+      ++C    l+fC +C+knRy +   ++ a +++vCP+Cr+iCnc+ c  ++g+
   CDO69815.1 626 PTFCHQCRRKTHLEKMRCTVikdngDSCG---LRFCDRCIKNRYPDITFDAYA-RRFVCPRCRDICNCTACCARRGE 698
                  578***************88886666666...************988777765.689**************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6649.14
//
Query:       CDO69816.1  [L=290]
Description: hypothetical protein BN946_scf184803.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 2062.50
//
Query:       CDO69817.1  [L=423]
Description: hypothetical protein BN946_scf184803.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-23   83.2   0.0      4e-22   78.8   0.0    2.5  1  Pkinase      Protein kinase domain
    3.1e-10   39.8   0.2    1.8e-05   24.2   0.0    3.6  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   4.5e-26     4e-22       1     264 []      32     421 ..      32     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4.5e-26
                 EEEEEEEEEESSEEEEEEEE...TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS........CT...TB--EEEEEEE....SSEEEEEEE--T CS
     Pkinase   1 yekleklGeGsfGkVykave...ketgkivAvKkikkekakkkkekkvlrEikilkklk........hp...nivrlyevfee....kdelylvleyve 81 
                 y+ ++klG G+ ++V  a+    +  ++ vA+K++    +++  +     E+++++kl+        hp   + ++  +vf+e     +++++v+    
  CDO69817.1  32 YTLVRKLGWGAGASVWLARTwrsEGGHRYVAIKVLTAMLTEDVLR-GSSLEVRMFEKLSdgehakdeHPgrrHCLTAESVFTEdsvhGRHICIVTPPFG 129
                 6788999999999998887511144568999**999999998875.6777888888887666322332233368888888888888889999**99999 PP

                 TEBHHHHHHHHSS.--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE.T............................................ CS
     Pkinase  82 ggeladllerkgs.lseeeakkiakqilegleylH.skgiiHrDlKpeNiLid.e............................................ 133
                 ++  + +++r+   ++ + +k+++kq+l +l+ylH   +++H+D+K +Ni+++ +                                            
  CDO69817.1 130 QNVAELRISRSLDeFPLSALKSVVKQTLLALDYLHrILRVVHMDVKASNIFVQlRasdedithylqrhpaeekrpqethgeqsfmhtrsqplpnfgldp 228
                 887777787665569999*****************5578**************659*******************************999999999999 PP

                 ...TTEEEE-SGTTSEESSSSCS.BCTTTSCGGG.S-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...... CS
     Pkinase 134 ...kgelKitDFGlakelesssk.ltsfvgtseY.lAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg...... 221
                    + ++ ++D+G    +  +s+   ++  t+ + +APE+  +++ s++vD+W++G+++ ell    p+  ++ +  +  + ++  ++++i +      
  CDO69817.1 229 slkNLHVCLGDYGGTVPIPVTSEmPGEMATTPFFvRAPELYLGHHWSTPVDIWAVGCMISELLVPASPLFPQDLTR-IPDDQQRRAHFARITErlgqfp 326
                 887777*******99999998884556666666656**************************99877765333332.2222222334444444433553 PP

                 .SHH...HHHTTS.........................................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 222 .etkeklpeasei.........................................................seeakdllkkllkkdpkkRltaeellqhp 262
                  +        + +                                                          + + ++++++l+ dp+kR+taeell+++
  CDO69817.1 327 lD------FLHRCpnrdqyfdaageppdtertehdadpgrpilalppqggtleaflgndlhvrrcfsqedLQAIFRFMRRCLEIDPEKRPTAEELLRDE 419
                 32......222224445669999*******************************************9988888999*********************** PP

                 GG CS
     Pkinase 263 yl 264
                 +l
  CDO69817.1 420 WL 421
                 97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     2e-09   1.8e-05       3     200 ..      34     292 ..      32     322 .. 0.86
   2 !    8.7   0.1   0.00011      0.95     231     257 ..     391     417 ..     381     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2e-09
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-.......B...TTB--EEEEEE....SSSSEEEEEE--TT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.k.......h...pnivkllgvct....keepllivteyvkg 85 
                  l +klG Ga ++V+ ++   ++e  +  Va+K+l++  te+  +    e+++++kl +       h   ++ +    v t    ++++++ivt    +
   CDO69817.1  34 LVRKLGWGAGASVWLARTW-RSEGGHRYVAIKVLTAMLTEDVLRGSSLEVRMFEKLsDgehakdeHpgrRHCLTAESVFTedsvHGRHICIVTPPFGQ 130
                  6799************988.7999999*********99999999999999999998533322222222236777777777766667779****99988 PP

                  EBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEE............................................ CS
  Pkinase_Tyr  86 GdLlkfLrkkekekltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlse............................................ 138
                  +  +  + ++  +++ l+ l s++ q   +++yL++  ++vH d+ a N++++                                             
   CDO69817.1 131 NVAELRISRS-LDEFPLSALKSVVKQTLLALDYLHRIlRVVHMDVKASNIFVQLrasdedithylqrhpaeekrpqethgeqsfmhtrsqplpnfgld 227
                  8888888888.9***********************9747*************9889999*************************************** PP

                  ....TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 139 ....nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEift 200
                      n +v ++D+G +  i    +    e a++p+   apE    ++ ++  D+W+ G ++ E++ 
   CDO69817.1 228 pslkNLHVCLGDYGGTVPI-PVTSEMPGEMATTPFFVRAPELYLGHHWSTPVDIWAVGCMISELLV 292
                  ***999********99999.555556788899999999************************9987 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00011
                  BHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfselve 257
                   +++ ++m++c+e dpe+Rpt +el++
   CDO69817.1 391 LQAIFRFMRRCLEIDPEKRPTAEELLR 417
                  578999***************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2934.34
//
Query:       CDO69818.1  [L=333]
Description: hypothetical protein BN946_scf184803.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2378.17
//
Query:       CDO69819.1  [L=620]
Description: Glucose oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-55  186.2   0.0    1.2e-54  185.8   0.0    1.2  1  GMC_oxred_N    GMC oxidoreductase
      8e-32  110.7   0.0    1.4e-31  110.0   0.0    1.4  1  GMC_oxred_C    GMC oxidoreductase
     0.0007   18.9   0.1      0.021   14.0   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0027   17.9   0.0     0.0067   16.6   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0031   17.2   0.3     0.0072   16.0   0.1    1.7  2  DAO            FAD dependent oxidoreductase
     0.0047   16.0   0.1     0.0089   15.1   0.1    1.4  1  Lycopene_cycl  Lycopene cyclase protein
     0.0049   16.0   0.1       0.18   10.8   0.1    2.3  2  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.046   13.0   0.1      0.077   12.2   0.1    1.2  1  Thi4           Thi4 family
      0.053   13.5   0.3       0.17   11.8   0.1    1.9  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   5.9e-58   1.2e-54       1     295 [.      46     359 ..      46     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 5.9e-58
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaa 97 
                  +d++v+ggG++g++vAaRL+e+ s ++l++eagg+++    i   +     +++ l++a e       ++  +i   GktlGG+s++N++a++R+ +a
   CDO69819.1  46 YDYIVVGGGLTGTTVAARLAENSSLQILMIEAGGDDRTNPqIYDIYEYGAVFNGPLDWAWEA------DQGKVIH-GGKTLGGSSSINGAAWTRGLNA 136
                  79**********************************98884666666667778888988764......7777777.9********************* PP

  GMC_oxred_N  98 dldeWeeeagle....gwssdevlpafkkvetaqale...........sdlhgvdgrlgv.tekgkeesplnkallkaaee.lGlpvprdlngkhqcG 178
                  ++d+W++    e    gw+++++  ++kk+e  +a++           +++hg++g++++  ++  + +p++ a+++ + +  G+p  +dlng+ + +
   CDO69819.1 137 QYDSWSSLLEPEeasvGWNWNNLFGYMKKAEAFSAPNdqqrakgadsiASYHGTTGPVQAtFPDEMYGGPQMPAFVNTVVNvTGMPHYKDLNGGTPNC 234
                  *****986544333339**************99999999*********************4466677899**99999876527*************** PP

  GMC_oxred_N 179 vcllgv...tcrtgarqstarawLrpal.erpnleiltgakaekiilegrkk..ravGVeasdkkgt.vkrlvvaakevvvaaGalnsPqlLqrSGlG 269
                  v+++++    ++++ r+s+ +a+  p   +r++ ++l + +a+k++++g++    avG+e+  ++ t  + +  a+kev++aaGa+++P lLq+SG+G
   CDO69819.1 235 VSITPLsinWHDDDHRSSSIEAYYTPVEnNRQGWTLLIDHMATKVLFDGTNAplTAVGIEFGASDATgNRYKAFARKEVILAAGAIQTPALLQLSGIG 332
                  **9997544588999***********98799****************665543389*****9999996777899************************ PP

  GMC_oxred_N 270 kaehLkevgvdvvvdlp.vGknLqdHp 295
                  + + L ++g+++  dl  vGknLq ++
   CDO69819.1 333 DSDVLGPLGISTLSDLKtVGKNLQEQT 359
                  ************************875 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   6.8e-35   1.4e-31       1     144 []     463     612 ..     463     612 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 6.8e-35
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHH....H-E.E-S--B- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvke....avl.tsaHplG 92 
                  P+srG+vt++s++p ++p +++ny+s ++dl + +++ +  rk+l +++l  +l  e+ pg + ++ + +  +d+++ k + +    a + ++aHp+G
   CDO69819.1 463 PFSRGNVTITSNNPFAKPSVNVNYFSVDFDLTMHIAGARLSRKLLGSPPLsSLLVGETVPGFKTVPNNGNGGTDADWKKWILKpgnsAGFaSVAHPIG 560
                  89**********************************************998788888889999999999999*********99888655569****** PP

                  TT-B-STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  93 tcrMGadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  t++M+++   +VVD++l+v++++nLrVvDaS++P +++a+ ++t + +Aeka
   CDO69819.1 561 TAAMMKRSLGGVVDAQLKVYDTTNLRVVDASMMPLQISAHLSSTLYGVAEKA 612
                  **************************************************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.1e-05     0.021       1      32 [.      46      81 ..      46      91 .. 0.84
   2 ?    2.7   0.0      0.03        59      85     133 ..     300     351 ..     224     370 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                 CSEEEE--SHHHHHHHHHHHH.HTS-EEEEE...TT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx...xx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.agakvtlve...le 32
                 +d++v+GgG  G+++a +la+ ++++++++e   ++
   CDO69819.1 46 YDYIVVGGGLTGTTVAARLAEnSSLQILMIEaggDD 81
                 689******************77*******854444 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.03
                  EEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.......TTBEECCSECHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx......xxxxxxxxxxxxxx RF
  Pyr_redox_2  85 vklekkkegdeekiaydklvlAtGs..sprdlgipGv......aenvgklvrtldsa 133
                   +      +  + +a ++++lA G+  +p +l++ G       ++ ++  ++ l+++
   CDO69819.1 300 ATG-----NRYKAFARKEVILAAGAiqTPALLQLSGIgdsdvlGPLGISTLSDLKTV 351
                  222.....44455666********988999999999866666655555555555444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.4e-06    0.0067       1      28 [.      50      78 ..      50     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekr 28
                   +vG+Gl+G + A++La++  +++l +e++
     CDO69819.1 50 VVGGGLTGTTVAARLAENsSLQILMIEAG 78
                   8****************8799******97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.6e-06    0.0072       1      29 [.      47      78 ..      47      85 .. 0.91
   2 ?   -3.1   0.0       2.2   4.4e+03     188     203 ..     302     320 ..     286     334 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
                EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29
                d +++GGG +G ++A  La+     ++ +e+g
  CDO69819.1 47 DYIVVGGGLTGTTVAARLAENSslqILMIEAG 78
                789****************997799*****98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 EEE.E.EEEE.EEE--GGG CS
         DAO 188 gen.d.aada.vVnaaGaw 203
                 g++ +  a++ v++aaGa 
  CDO69819.1 302 GNRyKaFARKeVILAAGAI 320
                 43322323557*****974 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.5e-06    0.0089       1      40 [.      47      84 ..      47     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.5e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpn 40
                   D +v+G+G+ g  +Aarl +++  l++++iea+ +  ++n
     CDO69819.1 47 DYIVVGGGLTGTTVAARL-AENSSLQILMIEAGGDD-RTN 84
                   789***************.78899*******99776.555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   9.1e-05      0.18       1      33 [.      47      80 ..      47      87 .. 0.87
   2 ?    2.8   0.0     0.025        50     156     204 ..     268     322 ..     254     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.1e-05
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeqe 33
                   D iV+G+Gl G + A+++ae+   +++++e ++ 
     CDO69819.1 47 DYIVVGGGLTGTTVAARLAENSSlQILMIEAGGD 80
                   88******************87779999998876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.025
                    EEEEESEEEEEEEECTT....EEEEEEEEET.TTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 156 vdfqerteadeLivedg....rvtGavvenp.esgrevrirak.avvlatgGfgr 204
                     +++  + a++++ ++      ++G+++  + ++g++ +  a+  v+la+g+++ 
     CDO69819.1 268 WTLLIDHMATKVLFDGTnaplTAVGIEFGASdATGNRYKAFARkEVILAAGAIQT 322
                    67788888888888544677888888888778666666666666********987 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.9e-05     0.077      17      49 ..      45      77 ..      36      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                  D ++vG+G +G t a  la++  l+++++e+
  CDO69819.1 45 TYDYIVVGGGLTGTTVAARLAENSSLQILMIEA 77
                5699***************************96 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.7e-05      0.17       2      33 ..      50      77 ..      49      89 .. 0.87
   2 ?   -1.7   0.0       1.3   2.5e+03      57      78 ..     393     414 ..     390     433 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.7e-05
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdp 33
                   +vG+G +G++v++rL++++    +l+i +++ 
     CDO69819.1 50 VVGGGLTGTTVAARLAENS----SLQILMIEA 77
                   8*****************5....999999986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
  NAD_binding_9  57 semslftddpptfaeWlrerga 78 
                    +++s+ +  + ++  W+++++a
     CDO69819.1 393 QATSAVQTIQSSLSAWAKTQAA 414
                    566777777899999*999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4224.89
//
Query:       CDO69820.1  [L=603]
Description: hypothetical protein BN946_scf184803.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-19   67.8   0.0    2.3e-16   60.0   0.0    2.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.6e-17   63.1   0.0    3.1e-16   58.9   0.0    2.3  1  FMO-like       Flavin-binding monooxygenase-like
    1.6e-13   50.5   0.1    1.9e-10   40.4   0.1    3.0  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.9e-12   45.6   0.0    1.6e-08   34.1   0.0    2.9  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    1.5e-06   28.7   0.2     0.0057   17.2   0.1    3.7  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00018   21.7   0.0     0.0033   17.6   0.0    3.0  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00047   19.5   0.0     0.0042   16.4   0.0    2.2  2  FAD_binding_3  FAD binding domain
    0.00058   19.6   0.5       0.16   11.5   0.0    2.7  2  DAO            FAD dependent oxidoreductase
     0.0028   16.4   0.0      0.066   11.9   0.0    2.3  2  HI0933_like    HI0933-like protein
     0.0055   16.1   0.0      0.052   12.9   0.0    2.1  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.019   14.0   0.0      0.031   13.4   0.0    1.3  1  FAD_binding_2  FAD binding domain
      0.056   12.7   0.0        9.7    5.3   0.0    3.1  3  Amino_oxidase  Flavin containing amine oxidoreductase
      0.057   12.5   0.1       0.24   10.4   0.0    1.9  2  GIDA           Glucose inhibited division protein A
      0.065   13.9   0.1       0.54   10.9   0.0    2.3  2  SnoaL_2        SnoaL-like domain


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   1.8e-19   2.3e-16       1     198 [.     190     386 ..     190     394 .. 0.78
   2 !    5.0   0.0    0.0098        13     225     277 ..     487     535 ..     478     566 .. 0.73

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 1.8e-19
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelp 97 
                  +IiG+G  Gl +a  lk +g+   l++Ek+ +ig+ ++ ++ +   +    t + l+  +++   +           +  +++++ +l+ +a+  el+
   CDO69820.1 190 LIIGGGQSGLDVAARLKLLGV-PTLVVEKNeRIGDQWR-FRYQALCLHDPGTITCLTCRNFPPSWPV----------YTPAHKLAGWLEYYAEALELD 275
                  6********************.789*****88888765.4444444443223333444333333322..........344567778888888889*** PP

  Pyr_redox_3  98 iklfeeVesvkk.edegfevetske.....tyeAkkviiAtGef.dkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAlelvr 185
                  + l ++V++ ++ ++++  v+ +k+     +++ k+++ A+G   ++Pn ++ipG e+   +v h+ + ++ ++  g+kv+V+G+  Sa D+  + v+
   CDO69820.1 276 VWLSSTVTKADQdANNEWDVTVEKAdgskrVFHVKHLVSAIGLGgNNPNIPDIPGREEyqgQVLHSIYHNSGKDHIGKKVLVVGACTSAHDICADYVE 373
                  ***********95567788877654344559**********975268*********97545678999999**************************** PP

  Pyr_redox_3 186 kgaeVtvvtrgse 198
                  +g +Vt++ r+++
   CDO69820.1 374 HGVDVTMYQRDTT 386
                  **********975 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0098
  Pyr_redox_3 225 ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk.s 277
                  +kik+  ++ +k+ ++      v++e+g+++++ d +++atG+ + ++ +++ +
   CDO69820.1 487 GKIKLKNDSIIKRYTK----TGVEFENGSTLDA-DVILFATGFASLATTIARiC 535
                  5666666655555554....468899*987664.777888****9999988743 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   2.4e-19   3.1e-16       4     331 ..     189     525 ..     186     531 .. 0.75

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 2.4e-19
    FMO-like   4 vaviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllky 102
                 v +iG+G sGl         g+     e+ + iG  wrf+          y+++       ++c +   +p  +p + +  kl  +l+ +a+  +l  +
  CDO69820.1 189 VLIIGGGQSGLDVAARLKLLGVPTLVVEKNERIGDQWRFR----------YQALCLHDPGTITCLTCRNFPPSWPVYTPAHKLAGWLEYYAEALELDVW 277
                 789********8666655678878899************7..........88999999999********************************999766 PP

    FMO-like 103 iqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhh...vnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdi 198
                 +      ++v+k +d  +  +w+v+ ek +  ++ vf    + +       np++p    pG e+++Gq++hs  + + +   gk+vlv+G   s+ di
  CDO69820.1 278 LS-----STVTK-ADQDANNEWDVTVEKADGSKR-VFHVKHLVSAIGlggNNPNIP--DIPGREEYQGQVLHSIYHNSGKDHIGKKVLVVGACTSAHDI 367
                 53.....44555.6778889****9987665544.555444444333011567777..69**************9999********************* PP

    FMO-like 199 avelsrtaeqvllstrsGswvlsr..........v.sdsGypwdml..lvtrfksllknilptalsnwlve.........kklnkr..fnhenyglkpk 273
                  ++  +   +v +  r  +++++           + ++  yp d+   + + +   ++++++++ ++ + e         +k+  r  f he+ g+   
  CDO69820.1 368 CADYVEHGVDVTMYQRDTTYIMTTkegaplvfghLwWEGVYPPDVAdrVDASLPIWINEQISKRTTHQIAEadkaildglRKIGFRlnFGHEDGGFLSL 466
                 999888888887777777777654122222111142455599987533344444455555555444444332222222335555552267********* PP

    FMO-like 274 kralakepvlndelparilaGavkvkss..vkeltetsaifedgtveedidvvifatGyt 331
                  r +a  + l+    + ++ G++k+k++  +k++t+t + fe+g++ +  dv++fatG++
  CDO69820.1 467 TRRRAGGYYLDVGASQLLIDGKIKLKNDsiIKRYTKTGVEFENGSTLD-ADVILFATGFA 525
                 *************************9644489*************986.7********96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06    0.0071     135     178 ..     171     222 ..     125     236 .. 0.67
   2 !   40.4   0.1   1.5e-13   1.9e-10       2     176 ..     188     386 ..     187     397 .. 0.73
   3 !    5.0   0.0    0.0095        12     198     237 ..     489     524 ..     475     557 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.6e-06
                  HHCCSS-T........SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllp........krivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  ++k++  +          ++++GgG  G+++Aa l+ lg+ + +ve ++r+ 
   CDO69820.1 171 KWKDQRDRerqfldkdPTVLIIGGGQSGLDVAARLKLLGVPTLVVEKNERIG 222
                  2222222255555544589****************************99996 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 1.5e-13
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...........................HHHHCHHHHCCCCHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...........................evvkklnqgielllg 72 
                   v++iGgG  Gl +a +l+  g+ +++v ++++  +++    + +l   +++ i                             e       ++++ l 
   CDO69820.1 188 TVLIIGGGQSGLDVAARLKLLGVPTLVV-EKNERIGDQWRFRYQALCLHDPGTITCltcrnfppswpvytpahklagwleyyaE-----ALELDVWLS 279
                  699*************************.6666666666666666666666654446688888888888887777778765542.....224566666 PP

                  CTCEEEE....ESCEEEEETEEECTCEEEEEESEEEE---E...EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHH CS
                  xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  73 eevvkid....pgkkkvklekkkegdeekiaydklvlAtGs...sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalak 163
                  ++v+k d    ++  +v++ek + g+++ +  ++lv A+G    +p++++ipG +e++g++++++ +  +   +   k+++vvG+   + +++a + +
   CDO69820.1 280 STVTKADqdanNE-WDVTVEKAD-GSKRVFHVKHLVSAIGLggnNPNIPDIPGREEYQGQVLHSIYHNSGK--DHIGKKVLVVGACTSAHDICADYVE 373
                  6688888333223.367775554.999*************746678888999**99998885555544443..333368******************* PP

                  HT-EEEEEESSSS CS
                  xxxxxxxxxxxxx RF
  Pyr_redox_2 164 lgkevtlveardr 176
                   g++vt+ ++ ++
   CDO69820.1 374 HGVDVTMYQRDTT 386
                  ******7666444 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0095
                  EEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 198 vevklgtsvkeidgngeklevvledgeeidadlvvvavGv 237
                  +++k  + +k+ ++ g    v+ e+g+++dad +++a+G+
   CDO69820.1 489 IKLKNDSIIKRYTKTG----VEFENGSTLDADVILFATGF 524
                  4444444444444333....56777777777777777775 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0018       2.4     188     210 ..     183     205 ..     168     212 .. 0.79
   2 !   34.1   0.0   1.3e-11   1.6e-08     101     226 ..     264     385 ..     254     409 .. 0.82
   3 ?    0.2   0.0      0.26   3.4e+02     325     341 ..     509     525 ..     495     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0018
  K_oxygenase 188 llakkriaVvGsGqSaaeifedl 210
                  l +  +++++G+GqS+ +++  l
   CDO69820.1 183 LDKDPTVLIIGGGQSGLDVAARL 205
                  667889***********998766 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.3e-11
  K_oxygenase 101 YlrWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG...tepkiPevleklegkervvHsseylerkeellakkria 195
                  +l+  a++le  v  +++v++ ++d+++    ++v++++a+g+++ ++ ++lv ++G   ++p+iP++  + e + +v+Hs    +   +++ +k+++
   CDO69820.1 264 WLEYYAEALELDVWLSSTVTKADQDANN---EWDVTVEKADGSKRVFHVKHLVSAIGlggNNPNIPDIPGREEYQGQVLHSIYHNSG--KDHIGKKVL 356
                  6677788888778888999998888875...58999999*************9776544689******9999999*****9655444..5899***** PP

  K_oxygenase 196 VvGsGqSaaeifedllrrqkkvelklvtrse 226
                  VvG+  Sa +i+ d +++    +++++ r +
   CDO69820.1 357 VVGACTSAHDICADYVEHGV--DVTMYQRDT 385
                  **************998754..666666654 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.26
  K_oxygenase 325 eeetlevdavvlATGYr 341
                  + +tl++d++++ATG+ 
   CDO69820.1 509 NGSTLDADVILFATGFA 525
                  56899**********96 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.5e-06    0.0057       2      35 ..     189     222 ..     188     226 .. 0.94
   2 ?    3.9   0.0     0.061        78      42      79 ..     261     298 ..     258     302 .. 0.85
   3 ?    2.9   0.0      0.13   1.6e+02       1      31 [.     354     384 ..     354     397 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.5e-06
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 v+++GgG +gl++A+ l+ lg  + vve ++++ 
  CDO69820.1 189 VLIIGGGQSGLDVAARLKLLGVPTLVVEKNERIG 222
                 89****************************9997 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.061
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedg.vesvklk 79 
                 ++ +l+ + e++  +v+l+++v++ ++++++ +  v+++
  CDO69820.1 261 LAGWLEYYAEALELDVWLSSTVTKADQDANNeWD-VTVE 298
                 667899999*******************998665.7765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.13
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvvers 31 
                 kv+vvG+ +++ +  + + e+g +Vt+ +r 
  CDO69820.1 354 KVLVVGACTSAHDICADYVEHGVDVTMYQRD 384
                 79************************98775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.6e-06    0.0033       1      52 [.     191     242 ..     191     257 .. 0.75
   2 ?   -0.8   0.0       1.5   1.9e+03       1      27 [.     357     383 ..     357     386 .. 0.73
   3 ?   -1.9   0.0       3.1     4e+03      35      52 ..     465     483 ..     458     487 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.6e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---E CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahif 52 
                    I+G+G sGl  A++L+  g+  l++ek++r+G +++ +    + +d g  + 
     CDO69820.1 191 IIGGGQSGLDVAARLKLLGVPTLVVEKNERIGDQWRFRYQALCLHDPGTITC 242
                    9******************************966654433335555555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.5
                    EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllek 27 
                    +vGa  s+  +++ + ++g+dv+ +++
     CDO69820.1 357 VVGACTSAHDICADYVEHGVDVTMYQR 383
                    566666666667777789*****9987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.1
                    G-EECE.TTCEECTS---E CS
  NAD_binding_8  35 aasyev.pgvrvdygahif 52 
                    + ++++ +g+ +d+ga+ +
     CDO69820.1 465 SLTRRRaGGYYLDVGASQL 483
                    4556554789999999865 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.2e-06    0.0042       3      35 ..     188     220 ..     186     236 .. 0.92
   2 ?    0.3   0.0      0.25   3.2e+02      99     163 ..     253     317 ..     238     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                    +VlI+G+G +Gl  a  L+  Gv +++vek ++
     CDO69820.1 188 TVLIIGGGQSGLDVAARLKLLGVPTLVVEKNER 220
                    69****************************875 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.25
                    CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--G CS
  FAD_binding_3  99 vtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDG 163
                    +   p ++l   L+  ae+  l+v  +  v+   qd +++  +  +k++g ++ ++ k lv a G
     CDO69820.1 253 PVYTPAHKLAGWLEYYAEALELDVWLSSTVTKADQDANNEWDVTVEKADGSKRVFHVKHLVSAIG 317
                    556678888888999999999999999*************99999****************9976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00012      0.16       2      34 ..     189     223 ..     188     235 .. 0.89
   2 !    5.7   0.1    0.0071       9.2     145     271 ..     258     404 ..     254     542 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags 34 
                 v+iiGGG  Gl +A  L   g  ++++ek++++g 
  CDO69820.1 189 VLIIGGGQSGLDVAARLKLLGvpTLVVEKNERIGD 223
                 99***************888999*******99884 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.E.EEEEEEE--GGGHH..HHHTTCTTTSEE.EEEEEEEEEE.EECCTHSTG CS
         DAO 145 pakltaalaraaealGveilegtevtgleeedgkvwgverttp.gen.d.aadavVnaaGawsd..llgllkeldlpi.spvrgqvlvl.kplseklvs 236
                 ++kl+ +l   aeal  ++ + ++vt+ +++ +  w v ++++ g++ + +++++V a G++ +   +   +++  p  +  +gqvl+   + s k + 
  CDO69820.1 258 AHKLAGWLEYYAEALELDVWLSSTVTKADQDANNEWDVTVEKAdGSKrVfHVKHLVSAIGLGGNnpNI---PDI--PGrEEYQGQVLHSiYHNSGKDH- 350
                 57888999999****************987778889999555557774258899******99664444...555..3225577777766323333332. PP

                 SGCSEEEEE...........EEETTTTEEEEEETTSEEEEEESSE..........E CS
         DAO 237 paailpvpe...........tdddgrgvyvtprkdgrvlvGgtad..........e 271
                    +  v++            d  ++gv vt +  +++++ +t +          +
  CDO69820.1 351 --IGKKVLVvgactsahdicADYVEHGVDVTMYQRDTTYIMTTKEgaplvfghlwW 404
                 ..333333334466666666333344444444434556776666555555555550 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.1e-05     0.066       2      37 ..     188     223 ..     187     227 .. 0.94
   2 ?    1.9   0.0     0.058        74     135     179 ..     496     539 ..     482     544 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.1e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37 
                  +v++iGgG +Gl  A++++  g  +l++ek++++g 
   CDO69820.1 188 TVLIIGGGQSGLDVAARLKLLGVPTLVVEKNERIGD 223
                  699******************************996 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.058
                  EECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHH CS
  HI0933_like 135 vekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgykl 179
                  + k+ + k  v+ +++++l ad +++AtG +S++++ +   g ++
   CDO69820.1 496 IIKRYT-KTGVEFENGSTLDADVILFATGFASLATTIARICGEDF 539
                  433333.37899999*****************9998666555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.1e-05     0.052      20      70 ..     169     220 ..     157     233 .. 0.78
   2 ?    0.3   0.0       0.3   3.9e+02      28      70 ..     344     386 ..     330     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.1e-05
                   TTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  20 egew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   +g+w +++++ ++   ++ tv iiG G+ G  va rlk +g+  ++++++++
    CDO69820.1 169 HGKWkDQRDRERQFLDKDPTVLIIGGGQSGLDVAARLKLLGVPTLVVEKNER 220
                   6789444444445555788**************************9998876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.3
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   + +gk+  gk+v ++G+   ++ +     + g++v++y+r  +
    CDO69820.1 344 HNSGKDHIGKKVLVVGACTSAHDICADYVEHGVDVTMYQRDTT 386
                   66788999***************************99998755 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.031       2      35 ..     189     222 ..     188     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35 
                    v++iG+G +GL  A++++  G  ++vvek ++ g
     CDO69820.1 189 VLIIGGGQSGLDVAARLKLLGVPTLVVEKNERIG 222
                    9****************************99865 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.065        83       2      27 ..     197     222 ..     196     222 .. 0.98
   2 ?    5.3   0.0    0.0076       9.7     217     266 ..     269     322 ..     255     335 .. 0.86
   3 ?    0.4   0.0      0.23     3e+02     238     266 ..     500     528 ..     489     560 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.065
                    HHHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvG 27 
                    +GL +A +L+  G+ ++v+E ++r+G
     CDO69820.1 197 SGLDVAARLKLLGVPTLVVEKNERIG 222
                    8************************9 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0076
                    HHTTTTEEEETSEEEEEEEEETTC...EEEEETTSTEE..EESEEEE-S-HHHHH CS
  Amino_oxidase 217 aeelrgldirlntrVkeikregdg...vtvtledgevv..eaDaVvvTvplgvlk 266
                    ae +++ld+ l++ V++ +++++    vtv+  dg+++  ++++ v+++ lg  +
     CDO69820.1 269 AE-ALELDVWLSSTVTKADQDANNewdVTVEKADGSKRvfHVKHLVSAIGLGGNN 322
                    55.8999*************7777799*********9999*********999655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
                    TTCEEEEETTSTEEEESEEEE-S-HHHHH CS
  Amino_oxidase 238 gdgvtvtledgevveaDaVvvTvplgvlk 266
                      + +v++e+g++++aD ++ ++ ++ l+
     CDO69820.1 500 YTKTGVEFENGSTLDADVILFATGFASLA 528
                    5678999******************9999 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019      0.24       2      35 ..     189     221 ..     188     247 .. 0.78
   2 ?   -1.1   0.0      0.61   7.8e+02     125     150 ..     499     524 ..     488     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGT CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldti 35 
                 v +iGgG +G+  A+ ++ lG+++l + +k ++i
  CDO69820.1 189 VLIIGGGQSGLDVAARLKLLGVPTLVV-EKNERI 221
                 89**********************998.333333 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.61
                 TTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 125 ekkvkgvvtedgetikakavviatGt 150
                   + +gv  e+g+t+ a+++  atG 
  CDO69820.1 499 RYTKTGVEFENGSTLDADVILFATGF 524
                 456789*******************5 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00042      0.54      10      76 ..      45     122 ..      36     151 .. 0.68
   2 ?   -0.3   0.0       1.3   1.7e+03      34      86 ..     259     307 ..     249     314 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
                 TTCHHHHHHTEEEEEEEEET.TSE.....EESHHHHHHHHHHHHH.....HEEEEEEEEEEEEEETTEEEEEEEEEEE CS
     SnoaL_2  10 agdldalaalfapdvvwedp.gge.....lrGreairaffralfa.....afpdlrfeihdvvadgdrvavewtvtgt 76 
                 + ++d+++++fa+d  w+d  + +     ++G + ir+ ++  +a     +f   + ++++ + d  +++++++++ +
  CDO69820.1  45 SNNIDGILSHFADDGWWRDMlVLTwefrtFHGAAKIRKLLEDRLApaklsGFKLTTAKFENPYPDLAWILAHFDFESE 122
                 6799**************77633345556*********9999998664444444444445556666677777766655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.3
                 ESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEE.EEEEEEEEETTSSEEEE CS
     SnoaL_2  34 rGreairaffralfaafpdlrfeihdvvadgdrvav.ewtvtgtipatgrgvtv 86 
                 +  +++ +++++++    +l++ +   v+  d+ a  ew+vt+ ++a+g++  +
  CDO69820.1 259 HKLAGWLEYYAEAL----ELDVWLSSTVTKADQDANnEWDVTV-EKADGSKRVF 307
                 44444555555553....4555555555555554444677766.6666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 3930.41
//
Query:       CDO69821.1  [L=545]
Description: hypothetical protein BN946_scf184803.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3878.29
//
Query:       CDO69822.1  [L=447]
Description: hypothetical protein BN946_scf184803.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-43  148.5   1.9    1.4e-33  116.5   0.2    2.3  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.2     8e-38   1.4e-33       3      85 ..      17      99 ..      16     111 .. 0.93
   2 !   31.3   0.1   1.1e-11     2e-07     138     180 ..     122     164 ..     114     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 8e-38
                ES---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH--SS---S--B---EEETTEEEEEB------- CS
   Gti1_Pac2  3 kgyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeeesgikRWTDGvsWSpSrilgnfLvYreldkkrak 85
                +g+i+ttkda+l++ea++ gi++rvtrR ++ E++++i+sG++ vf+eeesgikRWTD + WS Sr++gnfL+Yre + + a 
  CDO69822.1 17 RGWIKTTKDAILVFEATRAGIVPRVTRRFHDLEKRSIIQSGAILVFTEEESGIKRWTDPYLWSASRMQGNFLMYREREDEYAP 99
                69**************************************************************************9876554 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1.1e-11
                 -----------------------EEEEEEEEEETTTEEEEEEE CS
   Gti1_Pac2 138 ekdserslvgsltdsykfkkdgLvKkTisvtlkgkelhlisYy 180
                 ++d e+ + gs ++ + +kk+gL+KkTis++++g+++hl+sYy
  CDO69822.1 122 DADLEHYILGSWNKGKGLKKNGLMKKTISMNIEGTTYHLVSYY 164
                 5677888899999999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 3114.22
//
Query:       CDO69823.1  [L=1145]
Description: hypothetical protein BN946_scf184803.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.5e-136  454.4   0.0     4e-136  453.7   0.0    1.3  1  Oxysterol_BP  Oxysterol-binding protein
      7e-16   58.6   0.0      9e-08   32.6   0.0    3.1  3  Ank_2         Ankyrin repeats (3 copies)
    5.5e-14   52.0   0.5    8.4e-09   35.5   0.0    3.1  3  Ank_5         Ankyrin repeats (many copies)
    6.1e-12   46.0   0.0    1.7e-11   44.5   0.0    1.9  1  PH            PH domain
    2.7e-11   42.6   0.4      0.094   13.3   0.2    4.1  3  Ank_3         Ankyrin repeat
    9.1e-11   42.1   0.4    0.00011   22.7   0.1    3.6  3  Ank_4         Ankyrin repeats (many copies)
    1.1e-10   41.4   1.3      0.018   15.5   0.0    3.9  3  Ank           Ankyrin repeat
    8.2e-06   26.0   0.0    2.1e-05   24.7   0.0    1.7  1  PH_8          Pleckstrin homology domain
    6.9e-05   23.2   0.1    0.00024   21.5   0.1    2.0  1  PH_11         Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.7   0.0    2e-139    4e-136       1     366 [.     724    1104 ..     724    1115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 453.7 bits;  conditional E-value: 2e-139
                    HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCE CS
  Oxysterol_BP    1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkg 95  
                    slw++lk++iGkDL+kis+Pvffnep+S+Lqr+aed+e+se+Ld+a +e+d+ +R+a+VaaFa+S+y+sti +r++KPFNP+LGEtfe+vr dk+
    CDO69823.1  724 SLWAVLKNSIGKDLTKISFPVFFNEPTSMLQRMAEDMEFSECLDAAYAEEDPHRRIAFVAAFAMSNYSSTI-GRIAKPFNPMLGETFEYVRFDKE 817 
                    79**********************************************999********************.9********************** PP

                    EEEEEEEEETTTTEEEEEEEECTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEE.EEE.................SEEEEEEE--EEEEE-TTTTS CS
  Oxysterol_BP   96 frfiaEQVsHhPpvsAfhaesegweldgeikvkskflgkslevkpeGtahlel.lkk.................sgehYtwtkpttivhniivgk 172 
                    +r+++EQVsHhPp+sA++aes++w+++ge+++++kf+gks+e++p+G+ah el l++                   ehY+w+k+tt ++++i+g+
    CDO69823.1  818 YRYVSEQVSHHPPISACWAESPNWRYYGEVDAQNKFMGKSFEIRPTGVAHAELlLPEerapdypkakgphvqgrVVEHYSWKKVTTNISGFILGS 912 
                    *****************************************************5344689**************9******************** PP

                    -EEEEEEEEEEEETTT--EEEEEEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT-BSXXGCGSSTTBCC CS
  Oxysterol_BP  173 lwvelsgeveitnhstgdkakleFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedasekskvkekeeqeefese 267 
                    ++++++g++ itnh+tgdk++l+Fk++g+  +k++++++g+v+d +++ +yei+G+w+++l+++++ ++  + + d+      ++++   ++e+ 
    CDO69823.1  913 PTIDHYGDMIITNHRTGDKCILTFKPRGWR-GKDAYEISGYVQDVQGNITYEIAGRWNSQLVARRVGSGVGQLHPDVPV---GSPTSPTASNEYI 1003
                    ****************************88.599*****************************9999988888777654...78999999***** PP

                    CCCCH-----...GGG--HHHHCCT---.TT..GGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT..----SSEEEEETT CS
  Oxysterol_BP  268 klWkasplpkaeeyygftkfavtlNeieeke..kslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk..ewkpkwFekekdp 358 
                    +lW++s +p    ++++t+fa+tlN++ e++  ++++ptD+RlRpDqra+e g++++A+e K++ Ee QR++r++ree +  ++kp+wF++++++
    CDO69823.1 1004 LLWRNSVKP--PAPFNLTPFAITLNDCPEDTlkPFVCPTDCRLRPDQRAFELGKYERANELKNKQEEFQRATRRAREEGRkpPHKPRWFSATTEE 1096
                    *****7775..47***************98889*******************************************5544577************ PP

                    TTSSCEEE CS
  Oxysterol_BP  359 dtgeevwk 366 
                    dt+e+vw+
    CDO69823.1 1097 DTKERVWV 1104
                    *******6 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   4.5e-11     9e-08      24      82 ..      57     125 ..      25     126 .. 0.78
   2 !   30.9   0.0   1.5e-10   3.1e-07       1      60 [.      63     136 ..      63     151 .. 0.77
   3 !    9.7   0.0   0.00066       1.3      48      83 .]     190     228 ..     169     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 4.5e-11
       Ank_2  24 kngktaLhyAakngnleivklLleh....ad.....ndgrtpLhyAarsghleivklLlek.gadinlk 82 
                 + g  aLh+A++  + e+++lLl+h     +      +g+t+Lh+Aa+ +++++v+lLl++ g+d  l+
  CDO69823.1  57 DLGAAALHLAIRCASCETISLLLSHrsisPNavwppGSGTTALHLAASLSRTDVVNLLLDQeGIDDSLR 125
                 27899*******998899******98877335566667*********99**********6659886655 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 1.5e-10
       Ank_2   1 LhlAakngnlelvklLl..egadpn...k..ngktaLhyAakngnleivklLleh.......adndgrtpLhyA 60 
                 LhlA++  ++e++ lLl   +  pn       g taLh+Aa+   +++v lLl++        d +grtpL +A
  CDO69823.1  63 LHLAIRCASCETISLLLshRSISPNavwPpgSGTTALHLAASLSRTDVVNLLLDQegiddslRDAQGRTPLEVA 136
                 79999987789999999654455665442689999999999999999999999977866675559999999999 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00066
       Ank_2  48 h..ad.ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                    +d  +grt Lh Aar + l++++l ++ gad+ ++d
  CDO69823.1 190 LsyLDdASGRTLLHEAARRKDLRLIELAVQAGADVFVRD 228
                 13444678*********9999999999999999997765 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.8   3.6e+03      19      30 ..      62      73 ..      58      83 .. 0.78
   2 !   35.5   0.0   4.2e-12   8.4e-09       7      56 .]      86     136 ..      78     136 .. 0.91
   3 !   13.4   0.0   3.8e-05     0.076      16      54 ..     198     236 ..     190     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.8
       Ank_5 19 pLhvAakygaad 30
                +Lh+A+++ +++
  CDO69823.1 62 ALHLAIRCASCE 73
                7******98876 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 4.2e-12
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                  +  ++ g g+t+Lh+Aa+  + dvv+lLl  +g d  l+d++G+t+l++A
  CDO69823.1  86 PNAVWPPGSGTTALHLAASLSRTDVVNLLLdQEGIDDSLRDAQGRTPLEVA 136
                 5667999******************************************98 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 3.8e-05
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 g t Lh Aa++  +++++l +  gad +++d rG+ ++d
  CDO69823.1 198 GRTLLHEAARRKDLRLIELAVQAGADVFVRDRRGRAVYD 236
                 67**********************************999 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   8.7e-15   1.7e-11       2     104 ..     267     366 ..     266     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 8.7e-15
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS...TEEEEEEESSHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng...srtyllqasseeerkeWi 97 
                 +  G+L k+++  k ++  rwfvL++++l+yy+ + +++    +gsi ++++e       ++++    fe+   +++g   s++++l+a+ + e+++Wi
  CDO69823.1 267 ELRGYLNKYTNVAK-GYNTRWFVLHNGVLSYYRHQ-DDETVASRGSIAMKTAELI----VPSGTSGLRFEVHSLPSRGhssSQKWYLKANHPVEATRWI 359
                 578**********9.********************.8888888***********9....45777777788855555555666***************** PP

                 HHHHHHH CS
          PH  98 kaiqsai 104
                 +aiq++i
  CDO69823.1 360 HAIQRSI 366
                 ****987 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   4.7e-05     0.094       4      31 .]      61      88 ..      58      88 .. 0.92
   2 !   12.2   0.0   0.00011      0.23       4      28 ..      97     121 ..      94     121 .. 0.92
   3 !   12.5   0.0   8.7e-05      0.17       2      29 ..     198     224 ..     197     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.7e-05
       Ank_3  4 tpLhlAarsgnleivkfLlenkgadvna 31
                 +LhlA+r++++e + +Ll ++ + +na
  CDO69823.1 61 AALHLAIRCASCETISLLLSHRSISPNA 88
                69**********************9996 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
       Ank_3   4 tpLhlAarsgnleivkfLlenkgad 28 
                 t+LhlAa+  ++++v +Ll++ g+d
  CDO69823.1  97 TALHLAASLSRTDVVNLLLDQEGID 121
                 9*******************88887 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 8.7e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+t+Lh+Aar  +l ++++ ++  gadv
  CDO69823.1 198 GRTLLHEAARRKDLRLIELAVQ-AGADV 224
                 9*********************.89997 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   5.3e-08   0.00011       4      55 .]      62     115 ..      59     115 .. 0.87
   2 !   17.4   0.0   2.5e-06     0.005       2      39 ..      96     133 ..      95     136 .. 0.93
   3 !   14.2   0.0   2.5e-05      0.05      14      53 ..     174     216 ..     156     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.3e-08
       Ank_4   4 aLhyaaisgrlelvrlLlek.gadinaq.dnrsGetalhiAakrgnveilklLl 55 
                 aLh a+     e++ lLl++  +++na+ +++sG talh Aa+ ++ +++ lLl
  CDO69823.1  62 ALHLAIRCASCETISLLLSHrSISPNAVwPPGSGTTALHLAASLSRTDVVNLLL 115
                 567777766668999****967*********************99999999997 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.5e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetal 39 
                 +taLh aa+ +r+++v lLl++ g+d   + +++G+t+l
  CDO69823.1  96 TTALHLAASLSRTDVVNLLLDQeGIDDSLR-DAQGRTPL 133
                 89******************999***7777.*******8 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.5e-05
       Ank_4  14 lelvrlLle...kgadinaqdnrsGetalhiAakrgnveilkl 53 
                 + l++lL +   + +d+ + d++sG+t+lh Aa+r +++ ++l
  CDO69823.1 174 EALIKLLSSpriRLVDLSYLDDASGRTLLHEAARRKDLRLIEL 216
                 55566666432245778888999************99999887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.6   0.00017      0.35       5      30 ..      62      89 ..      59      89 .. 0.86
   2 !   15.5   0.0   9.1e-06     0.018       2      26 ..      95     121 ..      94     136 .. 0.84
   3 !   10.7   0.0   0.00029      0.58       2      31 ..     198     228 ..     197     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                HHHHHHHHTTHHHHHHHH.TT.TSTTCB CS
         Ank  5 PLHlAatngkkriiklLL.hG.Anlnal 30
                +LHlA+++++ + i+lLL h+  ++na+
  CDO69823.1 62 ALHLAIRCASCETISLLLsHRsISPNAV 89
                8*****999999******9964789985 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 9.1e-06
                 SBBHHHHHHHHTTHHHHHHHH.T.TTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.h.GAn 26 
                 G T+LHlAa+   ++++ lLL + G +
  CDO69823.1  95 GTTALHLAASLSRTDVVNLLLdQeGID 121
                 89*******888888******755754 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00029
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T LH Aa+++++r i+l +  GA++  +d
  CDO69823.1 198 GRTLLHEAARRKDLRLIELAVqAGADVFVRD 228
                 99****************878559**98777 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     1e-08   2.1e-05       7      87 ..     275     364 ..     270     366 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1e-08
        PH_8   7 rrkklqgyakRfFvLdlksstlsYyrddnss..alrgkiplsla..iisaneekreiiids.......GaevWeLkasnekdfqeWvealek 87 
                     ++gy  R+FvL  +++ lsYyr+++++  a rg+i++++a  i+   ++  ++ + s         + W Lka+   ++++W++a+++
  CDO69823.1 275 YTNVAKGYNTRWFVL--HNGVLSYYRHQDDEtvASRGSIAMKTAelIVPSGTSGLRFEVHSlpsrghsSSQKWYLKANHPVEATRWIHAIQR 364
                 556789*********..9********998885677*******998677777788888886433332226789*****************986 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.2e-07   0.00024       3     104 ..     270     364 ..     268     365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
       PH_11   3 Gylkk..kgskaWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneeteeWv 99 
                 Gyl+k  + +k++ +rwf vl++gvL+yY  + +       ++S+gs a   a+li  +    +  r + ++      s ++k + lk++   e   W+
  CDO69823.1 270 GYLNKytNVAKGYNTRWF-VLHNGVLSYYRHQDDET-----VASRGSIAMKTAELIVPS--GTSGLRFEVHSLPSRGHSSSQKWY-LKANHPVEATRWI 359
                 77765225678*******.*************9999.....899999888888887665..456666677777777778888997.9999999999999 PP

       PH_11 100 ealke 104
                 +a+++
  CDO69823.1 360 HAIQR 364
                 99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7630.02
//
Query:       CDO69824.1  [L=1037]
Description: hypothetical protein BN946_scf184803.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-41  140.5   0.1      1e-39  136.5   0.1    2.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.9e-19   67.5   0.0    2.4e-18   65.9   0.0    1.8  2  Rieske_2       Rieske-like [2Fe-2S] domain
      2e-15   57.1   0.8      3e-13   50.1   0.1    3.2  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.3e-14   53.0   4.3    1.6e-12   47.6   4.2    2.7  2  Fer2_BFD       BFD-like [2Fe-2S] binding domain
    6.4e-13   48.4   0.0    1.5e-12   47.2   0.0    1.7  1  NIR_SIR_ferr   Nitrite/Sulfite reductase ferredoxin-like half
    2.8e-11   43.2   1.0      1e-10   41.4   0.0    2.4  3  Rieske         Rieske [2Fe-2S] domain
    4.6e-11   42.5   0.0    1.5e-10   40.8   0.0    1.8  1  NIR_SIR        Nitrite and sulphite reductase 4Fe-4S domain
     0.0077   16.1   0.1        2.7    8.0   0.0    2.9  2  Rubredoxin_C   Rubredoxin NAD+ reductase C-terminal domain
  ------ inclusion threshold ------
      0.025   14.6   3.6        7.4    6.5   0.1    3.7  4  NAD_binding_9  FAD-NAD(P)-binding
      0.036   13.2   2.9        2.3    7.2   0.0    2.9  3  FAD_binding_2  FAD binding domain
        2.9    7.1   6.0       0.16   11.3   0.3    1.8  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.1   6.4e-43     1e-39      67     279 ..      58     294 ..       9     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 6.4e-43
                  CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BC.....TCTTC.....TTBEECCSECHHHHHHCCSS-T............. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx....xxxxxxxxxxxxxxxxxxxxxxx............. RF
  Pyr_redox_2  67 ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdl.....gipGv....aenvgklvrtldsaealklkllp............. 142
                  + +  ge+vv+i  + ++v       + ++++ yd++v+AtGs++ ++      ipGv    +   +  + t++++e+lk+  +p             
   CDO69824.1  58 FSFHVGETVVAINVEGRTVST-----DAGRTVPYDHCVIATGSEATLPsyadlSIPGVfgyrNISDINKLLTYADKEELKDCSVPscpsllpssveli 150
                  667788889999999988888.....8899*************888887777799999998855555555788999999999999*******999999 PP

                  ..SEEEEES-SHHHHHHHHHHHHH.T-E.EEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEE.EEETTSCEEEESEEEE CS
                  ..xxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 ..krivvvGgGyiGvElAaalakl.gke.vtlveardrll.raldkelsaaleealekeGvevklgtsvkeidgnge.kle.vvledgeeidadlvvv 233
                     +++v+GgG+ G+E A a+++l +++ vt+v++   +l r+ld + ++++ ++++++Gv++   ts++++  ++e +l+  +l dg+++ ++ vvv
   CDO69824.1 151 fySQALVIGGGLLGLEAAKAIHDLsAVKdVTIVHRQAYPLsRQLDAQGGEIVLRRIKAMGVTFLGSTSIQRFLVDHEgRLSgAELVDGSTVGCKIVVV 248
                  99999******************975556*******************************************9999988889**************** PP

                  -S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC.T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2 234 avGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva.g 279
                  a+G++p+++ + +++gl++ +rggivvd++l+t+ ++iyaiG +a  
   CDO69824.1 249 AIGITPRDDVA-RQAGLACAPRGGIVVDDSLQTSAKDIYAIGECAsW 294
                  ***********.*********************************52 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       9.6   1.6e+04      31      43 ..     280     292 ..     257     298 .. 0.77
   2 !   65.9   0.0   1.5e-21   2.4e-18       1     101 [.     862     973 ..     862     975 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9.6
                 -TTS-EEEEESS- CS
    Rieske_2  31 lekeevyAidnld 43 
                 ++++++yAi++  
  CDO69824.1 280 TSAKDIYAIGECA 292
                 4677899998765 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 1.5e-21
                 SEEEEEECCCS-TTB-.........EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEEC..TTCEEEE-TTT--EEETTT-BBSS-TTSB CS
    Rieske_2   1 ewvpvckledlvketg.........vaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdk..kgelvvasPlykqkfdLktGecledeevs 88 
                 +w +v++++d+++ +g         +a  ++++q+a+f++  +  +A+++++p  +a vl +G+v d+  +g+++v +P++k +fdL++G+cl+de++ 
  CDO69824.1 862 TWRKVANVDDFAPAEGattcaavssAAIRYGDSQIAIFHVPGQGYFATQQMCPHRRAFVLDHGIVSDDpqSGSVYVSCPMHKRNFDLTSGKCLNDESYG 960
                 59999999999999886644443323345589**********************************996577899************************ PP

                 -BEE-EEESTSEE CS
    Rieske_2  89 lkvypvrvedgkv 101
                 +  ++v+v+++ +
  CDO69824.1 961 IISFEVKVDGDDI 973
                 *********9987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.047        77       2      22 ..      11      31 ..      10      78 .. 0.81
   2 !   50.1   0.1   1.8e-16     3e-13       2      74 ..     155     231 ..     154     238 .. 0.92
   3 ?   -3.3   0.0       8.4   1.4e+04      26      49 ..     827     851 ..     818     852 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.047
                EEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg 22
                vvvvG G +g+ + + l +l 
  CDO69824.1 11 VVVVGLGMVGIAFSEKLLDLD 31
                8**************998776 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 1.8e-16
                 EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..kkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg.ve 74 
                 ++v+GgG++glE+A+a+++l   k+Vt+v+r+  +l r+lD++ ++i+ ++++++g+++l +t+++++  + +g ++
  CDO69824.1 155 ALVIGGGLLGLEAAKAIHDLSavKDVTIVHRQAYPLsRQLDAQGGEIVLRRIKAMGVTFLGSTSIQRFLVDHEGrLS 231
                 68*****************99889*****************************************999888877565 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.4
                 EEEESSSSSS.TTSSHHHHHHHHHH CS
   Pyr_redox  26 tvversdkll.rllDeeaskilqek 49 
                  v++ + +++    D++a +++ +k
  CDO69824.1 827 EVIVERGQPRpADWDKDATSLILKK 851
                 6899999999999999999988775 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   4.2   9.7e-16   1.6e-12       2      50 ..     469     516 ..     468     517 .. 0.96
   2 ?    2.5   0.0      0.11   1.9e+02       2      33 ..     530     561 ..     529     564 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 9.7e-16
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 +C+C++v++g I++ i ++g +++++vkr+tkag gCggC+p + +i++
  CDO69824.1 469 ICSCHNVSKGRIVQCI-KDGTQNLADVKRKTKAGAGCGGCVPLLTNIVK 516
                 9***************.99************************999976 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtk 33 
                 +C+ ++ ++ ++ ++i+ ++l+t+ +++++++
  CDO69824.1 530 ICSHFAMSRADLFNVIKIKKLKTMPAIMEAVG 561
                 8888999*********7788*******98875 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0     9e-16   1.5e-12       3      67 ..     574     635 ..     572     637 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 9e-16
  NIR_SIR_ferr   3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLa 67 
                   q++g+  ++v  rvp+G it++ l  l ++a+kyg  + ++T  Q + l+g +++dl+ i++eL 
    CDO69824.1 574 QRNGT--FSVVPRVPAGEITPDKLIVLGQVAQKYG-LYTKITGGQRVDLFGAQKADLPSIWKELV 635
                   88876..6***************************.***************************95 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   2.9e+03      59      69 ..     466     476 ..     456     492 .. 0.72
   2 ?   -3.1   0.0       4.9     8e+03      35      48 ..     523     536 ..     511     542 .. 0.70
   3 !   41.4   0.0   6.3e-14     1e-10       2      79 ..     863     956 ..     862     962 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.8
                 .EEE-TTT--E CS
      Rieske  59 gvleCpcHgwa 69 
                  + +C+cH+ +
  CDO69824.1 466 DAQICSCHNVS 476
                 4678****875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.9
                 -EEEEESC-TTTT- CS
      Rieske  35 evyAlsdvCtHrga 48 
                  v + +++C+H  +
  CDO69824.1 523 GVAVNNHICSHFAM 536
                 45566789**9766 PP

  == domain 3  score: 41.4 bits;  conditional E-value: 6.3e-14
                 EEEEEEGGGC-..TTC.......EEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGG.SEEE.....TT.EEE-TTT--EEE.TTSBEEE- CS
      Rieske   2 wvavakesdvp..egd.......pltvkvggeplvvlrdedgevyAlsdvCtHrgaplse.gkid.....ekgvleCpcHgwayd.adGkvikg 79 
                 w +va+++d+   eg        + ++++g+ +++++   ++ ++A++++C+Hr+a++ + g +      +   ++Cp+H+ ++d ++Gk+++ 
  CDO69824.1 863 WRKVANVDDFApaEGAttcaavsSAAIRYGDSQIAIFHVPGQGYFATQQMCPHRRAFVLDhGIVSddpqsGSVYVSCPMHKRNFDlTSGKCLND 956
                 667777777774333356666557788999999************************96645553345556679*****************986 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   9.2e-14   1.5e-10       2     152 ..     646     777 ..     645     782 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 9.2e-14
                 SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsa 100
                 g+ lr+v++c+g+ +c+  + D+  la ++e    ++y+  + P+KfK  vsgc + c++++ +D+gl+++ k            G  ++t++ ++ +a
  CDO69824.1 646 GKALRTVKSCVGTSWCRYGIGDSVGLAVQLE----QRYKGIRSPHKFKGGVSGCVRECAEAQGKDFGLIATDK------------GWNSATPRHATLLA 728
                 7899***************************....9999999*******************************............88899999999999 PP

                 EEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHH..HHHHHHHHH.H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.x RF
     NIR_SIR 101 rlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverl..GvekFrekv.e 152
                   + vp+ +v+++++  v +y      ++ k  R + ++e++  G++k+r+++ +
  CDO69824.1 729 --ADVPPSKVIQILDRFVMYYI----STADKLMRTARWLEQMdgGIDKLRRVIlD 777
                 ..7999999*************....9************9998889999998854 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0016       2.7       2      21 ..     337     356 ..     337     369 .. 0.82
   2 ?    4.8   0.1     0.017        27      47      70 .]     416     439 ..     410     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
                   --EEEETTEEEEEES--TT- CS
  Rubredoxin_C   2 vtiLkvsgidlfSvGdieee 21 
                   +t+Lk +g+d+ S+Gd  +e
    CDO69824.1 337 STKLKLMGVDVASFGDYFAE 356
                   699************98776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.017
                   EEEEEEES-HHHHHHHHHHHHTT- CS
  Rubredoxin_C  47 lvGAiliGDtkesaklkkliekkt 70 
                   l G  ++GDt+++ kl  l++kk+
    CDO69824.1 416 LLGGMMVGDTSDYVKLVALVKKKK 439
                   889******************985 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0048       7.9       1      46 [.      12      53 ..      12      62 .. 0.76
   2 ?    6.5   0.1    0.0045       7.4     120     155 ..      62      95 ..      48      96 .. 0.78
   3 ?    0.1   0.1      0.43     7e+02       2      31 ..     157     183 ..     156     227 .. 0.79
   4 ?   -1.7   0.0       1.6   2.6e+03     135     154 ..     232     251 ..     201     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0048
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlf.dpsepgagrvwrtdq 46
                   ++vG G+ G+a+ e+Ll+  +++++ ++  f ++++p     w+++q
     CDO69824.1 12 VVVGLGMVGIAFSEKLLDL-DNARRYRVVTFgEETHPE----WYQQQ 53
                   69*****************.599999999884444443....44444 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0045
  NAD_binding_9 120 hraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    + ++vv+++ +  g++v ++ g+++ +d++v+A+G 
     CDO69824.1  62 VGETVVAINVE--GRTVSTDAGRTVPYDHCVIATGS 95 
                    35677777765..567999***************95 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.43
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlf 31 
                    ++G+G  Gl +++++ + +   +  ++t++
     CDO69824.1 157 VIGGGLLGLEAAKAIHDLS---AVKDVTIV 183
                    8************999985...45555555 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.6
  NAD_binding_9 135 avlladgaslaadaVvLAlG 154
                       l dg+++ ++ Vv+A+G
     CDO69824.1 232 GAELVDGSTVGCKIVVVAIG 251
                    456789************99 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.9     0.015        24       2      32 ..     155     187 ..     154     203 .. 0.77
   2 ?   -0.6   0.0      0.32   5.2e+02     147     181 ..     202     237 ..     196     252 .. 0.81
   3 ?    7.2   0.0    0.0014       2.3     374     405 ..     270     295 ..     264     301 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.015
                    EEEE--SHHHHHHHHHHHH..TTT-EEEEESSS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaae..aGlkvavvekeq 32 
                    ++ViG+Gl GL AA ++++  a ++v++v    
     CDO69824.1 155 ALVIGGGLLGLEAAKAIHDlsAVKDVTIVHRQA 187
                    69*************999854555888876654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                    HHHHHHTCTEEEEESEEEEEEEE.CTTEEEEEEEEE CS
  FAD_binding_2 147 lvesarkagvdfqerteadeLiv.edgrvtGavven 181
                    ++++++++gv+f+ +t++++++v ++gr +Ga++ +
     CDO69824.1 202 VLRRIKAMGVTFLGSTSIQRFLVdHEGRLSGAELVD 237
                    67888899*************994588****99984 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0014
                    -EEEBETTSBESTTEEESSBTEEE-STCEESS CS
  FAD_binding_2 374 gGvetdengrvldadgqpipGLYAaGevaagg 405
                    gG+++d+++++        ++ YA+Ge+a++ 
     CDO69824.1 270 GGIVVDDSLQT------SAKDIYAIGECASWK 295
                    9**********......************775 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.2       4.9   7.9e+03      30      41 ..      10      21 ..       8      23 .. 0.89
   2 ?   11.3   0.3   9.7e-05      0.16      24      75 ..     148     201 ..     140     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4.9
                 EEEEESTSHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGl 41
                 +v+v+G G++G+
   CDO69824.1 10 TVVVVGLGMVGI 21
                 59********97 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.7e-05
                  TCB---EEEEESTSHHHHHHHHHHHHTT-..EEEEEESSH.HHHHHHHHTTTCEC CS
  AlaDh_PNT_C  24 pgvepakvlviGgGvaGlqAiatakglga..kVtvlDvrp.arleqleslgakfv 75 
                  + +  ++ lviGgG  Gl+A+++ + l a  +Vt++  ++    +ql++ g++ +
   CDO69824.1 148 ELIFYSQALVIGGGLLGLEAAKAIHDLSAvkDVTIVHRQAyPLSRQLDAQGGE-I 201
                  55566789*******************98334776665541455677777776.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 6905.02
//
Query:       CDO69825.1  [L=274]
Description: hypothetical protein BN946_scf184803.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-38  130.3   0.0    9.6e-38  129.9   0.0    1.1  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.1e-22   81.0   0.2    5.3e-17   62.3   0.0    2.0  2  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   1.1e-41   9.6e-38      23     248 ..      31     267 ..      14     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1.1e-41
                 HHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHH...HHHCHHHH.HHHC...CHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEE CS
       ECH_1  23 elltEliqalekleddksvravvLtG.gdkaFaaGadlkema...eeekakqa.llke...evlelwtklytvpkpviaavnGaaigGGlelalacDiv 113
                  + tEl q++ ++ ++++vravvL++ ++k F+aG d++++    + e+a  a  l++    +++  +++  +p+pvi a  G a g  + + +acD++
  CDO69825.1  31 RFWTELGQVFDRFSQEPTVRAVVLASaLPKLFSAGIDFTALSlpqGDEPARSAlRLRQhilGFQSCISAMERCPYPVIVATHGIAYGLSIDIISACDVR 129
                 5789***********************************98522133343333133431125788889999**************************** PP

                 EEETTTEEE-GGGGGTS--CTTCHHHHHHHHH.HHHHHHHHHHT-EEEHHHHHHCTSSSEEESG..GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH CS
       ECH_1 114 iaadnasfglnelklGlipgaggtqilarkvG.kskAeeilllgkkisaqealkvGlvdkvvpe..eqlleealelaeklaekspaalrqlkealnakl 209
                 +aa n +f+ +e+ +Gl ++ g   +l+++ G +s  +e++++g+++sa+ea+k+Glv++vv+   ++++  al la+ +aeksp a++  k+ l ++ 
  CDO69825.1 130 YAASNVVFAVKEVDVGLAADIGTLARLPKIAGnHSMIHELAYTGRNFSAAEAEKMGLVSRVVSGgrDEVVAAALDLAKLIAEKSPVAVAGTKHLLLHAR 228
                 ********************************67899*************************9666********************************* PP

                 HHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH--- CS
       ECH_1 210 edalaeqleaeaklfestfskddikeGlqaflEkrkpef 248
                 ++   e le  a+  +++ +++d  + ++a   k+kp f
  CDO69825.1 229 DHSVRENLEYTATWNSAMLQTHDLTNAVKAAQKKQKPAF 267
                 *************************99999888999988 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0     6e-21   5.3e-17      21     182 ..      34     201 ..      29     206 .. 0.87
   2 !   17.9   0.1   1.9e-07    0.0017     248     319 ..     201     269 ..     192     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6e-21
                 HHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THH....HHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHHHHHHTTSSEEEE- CS
       ECH_2  21 ralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkee....eeffreeYklnyliatypkpvvalmdGivmGgGvGlsvhgsfrvvt 115
                 ++l + +++++++++v++vvl +a +k f+AG D+ al   + ++ +++    ++ +    ++ ++++++p pv+   +Gi+ G  + +   + +r + 
  CDO69825.1  34 TELGQVFDRFSQEPTVRAVVLASALPKLFSAGIDFTALSLPQGDEPARSalrlRQHILGFQSCISAMERCPYPVIVATHGIAYGLSIDIISACDVRYAA 132
                 56889999******************************9988888544323456667777788889999999*************************** PP

                 TT-EEE--GGGGT----TTHHHHHHCSSTTHHHH..HHHH---B-HHHHHHTTS--EE--GGGHHHHHH CS
       ECH_2 116 ertvfAmPEtaIGlfPDvGgsyfLsrlpgelGly..lalTGarlkgadalaaglathyvpseklealee 182
                  + vfA+ E+ +Gl  D+G+   L+++ g+  +   la TG+++++a+a ++gl + +v+  + e +++
  CDO69825.1 133 SNVVFAVKEVDVGLAADIGTLARLPKIAGNHSMIheLAYTGRNFSAAEAEKMGLVSRVVSGGRDEVVAA 201
                 **************************98865543349*******************9998766555555 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS-------SS CS
       ECH_2 248 wakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPkWkp 319
                  a + ++ ++++sP++++ t ++l ++r+ s ++e l+   +  +++l+++D+++ v+a+  +k++kP ++p
  CDO69825.1 201 AALDLAKLIAEKSPVAVAGTKHLLLHARDHS-VRENLEYTATWNSAMLQTHDLTNAVKAA--QKKQKPAFRP 269
                 56678899**********************5.**************************98..899****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1793.94
//
Query:       CDO69826.1  [L=1020]
Description: hypothetical protein BN946_scf184803.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.5e-101  338.7   0.0   3.4e-101  338.3   0.0    1.2  1  Peptidase_C54  Peptidase family C54


Domain annotation for each model (and alignments):
>> Peptidase_C54  Peptidase family C54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.3   0.0  1.9e-105  3.4e-101       4     275 ..     301     739 ..     298     740 .. 0.95

  Alignments for each domain:
  == domain 1  score: 338.3 bits;  conditional E-value: 1.9e-105
  Peptidase_C54   4 flkdfesriwltYRkeFppieks.................................gltsDaGWGCmlRsgQmllaqalllhllgrdwrreeksek 66 
                    f++df+sriwltYR++F pi+++                                 g+t+DaGWGCmlR+gQ+lla+all+++lgrdwrr  +  +
     CDO69826.1 301 FYSDFTSRIWLTYRSQFFPIRDTtlaaldaelsdnptglpssppakkwnwplggekGWTTDAGWGCMLRTGQSLLANALLHLHLGRDWRRPPHPVY 396
                    99********************9*******************************************************************888888 PP

  Peptidase_C54  67 .keeetyrkilslFlDkps..apfSihrlvkigkslgkkvgeWfgPstvaqilkklvekakeeaglkvyvaqdssvvykddv.....kklakeskk 154
                     ++++ty++i+++FlD+ps  +pfS+hr++ +gk+lgk+vg+WfgPst+a ++k lv+ a++eagl v va d  v+y++dv     +      + 
     CDO69826.1 397 tADYATYVQIITWFLDNPSplCPFSVHRMALVGKDLGKDVGQWFGPSTAAGAIKVLVH-AFPEAGLGVAVAVDG-VLYESDVyaasrS-----VMY 485
                    89***************9999*************************************.99************7.6******444431.....222 PP

  Peptidase_C54 155 .....ekeekkw..kpvlilvplrlGldkvnpkyvealkellklkqsvGiiGGrpksslYfvgvqedkliyLDPHtvqeav............... 228
                          +++ +w  ++vl+l+++rlG++ vnp+y++++k+l++++qsvGi+GGrp+ss+Yfvg+q+d+l+yLDPH++++av               
     CDO69826.1 486 strrhGHNRLEWgdRAVLVLIGIRLGIEGVNPVYYNTIKTLYTFPQSVGIAGGRPSSSYYFVGSQADNLFYLDPHHARPAVplrppprsaferqgs 581
                    44445344444445********************************************************************************** PP

  Peptidase_C54 229 ................................................................................................ 228
                                                                                                                    
     CDO69826.1 582 pdaygsdrererertyrashhvrspttplsggrasgttsagssfsyrsptlspsplqqqlstssastsqsdssqshiharwqsssvlpddsaemds 677
                    ************************************************************************************************ PP

  Peptidase_C54 229 ...............edeaeseeelssfhckkprklsiskldpslllgflckdeedfedlve 275
                                   + +a+s++el++fhc+++rk+++s ldps+llgflck+e ++ dl++
     CDO69826.1 678 relglgtdldplqrhYVTAYSQTELKTFHCDRVRKMPLSGLDPSMLLGFLCKHEGEWLDLKN 739
                    ***************889***************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 6776.15
//
Query:       CDO69827.1  [L=322]
Description: hypothetical protein BN946_scf184803.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-38  132.5   0.0    1.4e-36  125.6   0.0    2.1  2  Ras          Ras family
    2.5e-28   98.7   0.0    3.5e-28   98.2   0.0    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    2.5e-08   33.6   0.0    7.6e-08   32.0   0.0    1.7  2  Arf          ADP-ribosylation factor family
      2e-05   24.6   0.0    3.1e-05   24.0   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00044   19.7   0.0     0.0006   19.2   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0017   17.9   0.0      0.006   16.1   0.0    2.0  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0068   16.3   0.1      0.038   13.9   0.2    2.0  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.044   13.1   0.0      0.068   12.5   0.0    1.3  1  AIG1         AIG1 family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   6.1e-40   1.4e-36       1     132 [.       5     149 ..       5     153 .. 0.94
   2 !    5.0   0.0    0.0074        17     140     160 ..     250     270 ..     243     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 6.1e-40
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET...TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd...gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwvee 96 
                 Klv++G s+vGK+s+ +++++++F++ y +Tig+df tk++  +   g++v+l+iwDTAGqe+f++l ++++r+a++++l++d+++ +++  ++kw+ +
  CDO69827.1   5 KLVVIGASGVGKSSIRNQYISGQFTTGYRATIGADFITKTLPHHsspGESVTLQIWDTAGQERFSALSSAFFRGADAVILMFDVNQPHTLAALTKWWAD 103
                 99**************************************99988889*************************************************** PP

                 HHHHST......TTSEEEEEEETTTGGG....G-SS-HHHHHHHHH CS
         Ras  97 ikrvae......envpivLvGnKvDlee....kravsteegeelak 132
                 ++++a+      +++ +v+vGnK+D+++      +vs+++++++ +
  CDO69827.1 104 FRDKAPvpddavDEFCCVVVGNKIDIARaagaGTVVSEAKARAFVE 149
                 *****999999989************99777777888888887766 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0074
                 EEBTTTTCTHHHHHHHHHHHH CS
         Ras 140 etSAktnenveeafeellrei 160
                  tSAkt e+v+++fe ++r++
  CDO69827.1 250 FTSAKTGEGVRDVFEYVARRV 270
                 59***************9987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   1.6e-31   3.5e-28       1     119 [.       5     128 ..       5     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 1.6e-31
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+v++G sgvGK+s+ +++++++f++ +++tig+df+tk++ +      ++  ++v+l+iWDtaGqerf++l + ++r+a+++il++d    ++ + l 
  CDO69827.1   5 KLVVIGASGVGKSSIRNQYISGQFTTGYRATIGADFITKTLPHH-----SSPGESVTLQIWDTAGQERFSALSSAFFRGADAVILMFDvnqPHTLAALT 98 
                 99*************************************98543.....334678*********************************53333557899 PP

                 HHHHHHHHHCS..SS.....-EEEEEE-TT CS
         Roc  97 eWlkelkkvag..ks.....pvilvgnkiD 119
                 +W  +++++a+  ++     ++++vgnkiD
  CDO69827.1  99 KWWADFRDKAPvpDDavdefCCVVVGNKID 128
                 ******999754322222235799*****9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.4e-11   7.6e-08      13     133 ..       2     135 ..       1     150 [. 0.84
   2 ?   -1.7   0.0      0.74   1.6e+03     152     173 ..     247     268 ..     238     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.4e-11
                 TEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE.....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei.....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakee 103
                 + ++++++G  + GK+ i +++ +++++t    Tig  f +++l +     + +++++wD  Gqe+   l + +f+  davi + D+++ + l+   + 
  CDO69827.1   2 RTVKLVVIGASGVGKSSIRNQYISGQFTTgYRATIGadFITKTLPHhsspgESVTLQIWDTAGQERFSALSSAFFRGADAVILMFDVNQPHTLAALTKW 100
                 6799***********************99778899833556778778888889*************************************999988776 PP

                 HHHH.....CTSGCCTTSEEEEEEE-TTSTTSS-H CS
         Arf 104 Lkal.....leeeelkevallvlaNKqDlpealse 133
                  + +     + ++ + e   +v++NK+D++ a+ +
  CDO69827.1 101 WADFrdkapVPDDAVDEFCCVVVGNKIDIARAAGA 135
                 655511122667888899***********999765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.74
                 EEEEEBTTTTBTHHHHHHHHHH CS
         Arf 152 eiqkcsavkgeglkeglewlse 173
                 +++ +sa +geg+ + +e +++
  CDO69827.1 247 KLFFTSAKTGEGVRDVFEYVAR 268
                 68899*********99998865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.4e-08   3.1e-05       2      87 ..       6      91 ..       5     125 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.4e-08
                EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE.....ETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT.T CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk.....lkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas.e 87
                 +++G + vGKS++ n+ +  +  ++ ++    d +++++       +   ++++Dt+G  e    +   l+ af +   ad+++l++d++  
  CDO69827.1  6 LVVIGASGVGKSSIRNQYISGQFTTGYRATIGADFITKTLPhhsspGESVTLQIWDTAG-QE----RFsALSSAFFR--GADAVILMFDVNqP 91
                689***************9865555555544444444444322211334789*******.54....33589999995..689*******7731 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.7e-07    0.0006       1      95 [.       5      97 ..       5     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.7e-07
   Gtr1_RagA  1 kvLLmGksgsGKtsmrsiiFdnylar.dtlrlgati..dveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedl 95
                k++ +G sg GK+s+r+   +    +    ++ga    ++  ++    + +tl++wD  Gqe+f +      ++  fr  +++i +fDv++ +   +l
  CDO69827.1  5 KLVVIGASGVGKSSIRNQYISGQFTTgYRATIGADFitKTLPHHSSPGESVTLQIWDTAGQERFSAL-----SSAFFRGADAVILMFDVNQPHTLAAL 97
                7899***********98655544443033344443222333344456789*************9887.....5899*************965544444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.7e-06     0.006      54     190 ..      41     268 ..       2     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.7e-06
                 SCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHH..HHHHHTTTE........EEEEEESCGST.HHHHHH CS
    GTP_EFTU  54 iTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevl..rlalkegvp........iivfiNKmDrl.kaelke 141
                 iT +  + s    +++ ++++ Dt G + Fs   ++  r +D ++l++d+++  +    + +      k  vp         +v+ NK+D +  a    
  CDO69827.1  41 ITKTLPHHSSP--GESVTLQIWDTAGQERFSALSSAFFRGADAVILMFDVNQPHTLAALTKWwaDFRDKAPVPddavdefcCVVVGNKIDIArAAGAGT 137
                 66666666777..9999**********************************875555444440044444445577777776788889999997555556 PP

                 HHHHHHHHHHHH..........................................................................HHHHHHHHHTTT. CS
    GTP_EFTU 142 iveevkqklsrk..........................................................................eeklekygekge. 165
                 +v+e+k +   +                                                                          +            
  CDO69827.1 138 VVSEAKARAFVErlvprpesppsptirlapsdxxxxxxxspphsqdalrsprrmpsgsslssaptitpslfirgqalasfeslpptT----------At 226
                 666665444222567778888888888888888888888888888887777777777777777777777776666655444444330..........13 PP

                 .................TTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 166 .................kevpvvfgSalkgegvktllealve 190
                                  +  +++f+Sa++gegv++++e++ +
  CDO69827.1 227 tpesspphplhlsppleRYPKLFFTSAKTGEGVRDVFEYVAR 268
                 444455555666666656777888888888888888888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.7e-05     0.038     102     122 ..       6      26 ..       1      35 [. 0.84
   2 ?   -1.8   0.0       1.2   2.6e+03      79     102 ..     248     271 ..     244     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                   v++G SGvGKS++ n+ ++ 
   CDO69827.1   6 LVVIGASGVGKSSIRNQYISG 26 
                  689*************98875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                  EEE--TTTHTTHHHHHHHCTTSEE CS
  RsgA_GTPase  79 vllvsaktkegleelkellkdkts 102
                  ++++sakt+eg++++ e+++ +++
   CDO69827.1 248 LFFTSAKTGEGVRDVFEYVARRVV 271
                  6899***********999988765 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05     0.068       2      58 ..       5      64 ..       4      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                EEEEESSTTSSHHHHHHHHHTS--...SS--TTTS---SS-EEEEEEETTEEEEEEE--S CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkka...FesklsaqsvtkkcqkksrtwdgkkinViDTPg 58
                ++v++G +g+GkS+  N  +  +    ++  + a  +tk+  ++s+  +  ++++ DT g
  CDO69827.1  5 KLVVIGASGVGKSSIRNQYISGQFttgYRATIGADFITKTLPHHSSPGESVTLQIWDTAG 64
                79****************998776677999999999*******99999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2282.60
//
Query:       CDO69828.1  [L=696]
Description: hypothetical protein BN946_scf184803.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-21   75.9   0.0    5.8e-19   68.5   0.0    2.7  1  DEAD        DEAD/DEAH box helicase
    5.9e-10   39.5   0.0    3.5e-09   37.0   0.0    2.2  1  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.055   13.5   0.0        0.1   12.6   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   9.6e-23   5.8e-19       1     171 [.     189     464 ..     189     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 9.6e-23
                 -HHHHHHHHHHHTT...........CEEEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgg...........gdvlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkky 73 
                 t+iQa ++++il+            ++ l+a eTGsGK++a+l+pvlq +                  ++  +p+al+++Pt+eL++q +  +k+++++
  CDO69828.1 189 TPIQALTLEHILKAeprtseeraqyHQWLLASETGSGKSMAYLLPVLQDLKLAelsgaprrtddssvpRRAMNPRALVLAPTHELTRQLAGFAKELLHN 287
                 79**********44455555666669999*******************9954488998888888888777788************************** PP

                 STSEEEEEET.TSSHHHHHHHH..........................HTT.CSEEEEEHHHHHHHH............................HCTS CS
                 xxxxxxxxxx.xxxxxxxxxxx..........................xxx.xxxxxxxxxxxxxxx............................xxxx RF
        DEAD  74 idlrvlliig.gvaardqlskl..........................dng.vdivvgtpgrlddll............................stgk 116
                 ++lrv++    +++ r+++++                           +++ vd++vgtp+++++l                              + +
  CDO69828.1 288 VKLRVVCASRaNTPSRKKVTAAkmaeavmdtpegdvdisseilvrpgaQQRpVDLLVGTPSKILELArgrgwdyeqrdaeharegdrmprrritvGEPE 386
                 **99997644333333333333556666899999999999999988864447********999999999*****9999999999999976666443344 PP

                 SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT.........................SEEEEEESSBSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxx RF
        DEAD 117 lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq.........................rqvivlSATlpk 171
                 + l +v+++V+DEad l d +f++  + il+ ++ +  + +                            ++i+ SAT+p+
  CDO69828.1 387 MGLADVEWVVVDEADVLFDPDFQEATRMILADISAARGH-P-VpfepelnltpsepkarfqptpvdypFNLILTSATIPS 464
                 56*******************************544332.2.14678889999999999999998877779999999885 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   5.8e-13   3.5e-09      57     111 .]     611     665 ..     517     665 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 5.8e-13
                 HHHHHHHTTSSSEEEESGGGTSSSTS.TTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  57 eileqfnkgesdvLiatdvaerGidi.pkvnlVinfdlprnvtsyiqriGRtgRag 111
                 e++eq  k+  +v+i+t+ ++rG+d+ p+v++V+++d prn+ ++ +r+GR gRag
  CDO69828.1 611 ESMEQL-KDMPHVMITTSLLSRGLDFaPDVKHVFIVDEPRNMVDFLHRAGRSGRAG 665
                 566666.32355*************966**************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05       0.1      21      85 ..     205     302 ..     185     416 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
                 .......TTSEEEEEESTTSTHHHHHHHHHHHH-S.......................-EEEEESSHHHHHHHHHHGGGGTGG..............G CS
      ResIII  21 s.....krdkrglikmaTGtGKTlvaaklierllkkgkee..................kflflvprkslleqtleefkkflseayke..........i 85 
                        + ++ l++ +TG+GK++ ++  + + lk ++ +                  ++l+l+p+ +l+ q+    k++l++ + +           
  CDO69828.1 205 RtseerAQYHQWLLASETGSGKSMAYLLPVLQDLKLAELSgaprrtddssvprramnpRALVLAPTHELTRQLAGFAKELLHNVKLRvvcasrantpS 302
                 1333335666999*************766666666555567999****************************99777666666655454433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4886.55
//
Query:       CDO69829.1  [L=281]
Description: hypothetical protein BN946_scf184803.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-47  160.0   0.6    5.6e-47  159.7   0.6    1.1  1  adh_short       short chain dehydrogenase
    4.5e-34  118.0   0.2    5.8e-34  117.7   0.2    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    5.6e-09   36.2   0.0    9.6e-09   35.4   0.0    1.4  1  KR              KR domain
    1.4e-06   27.9   0.0    1.9e-06   27.5   0.0    1.2  1  DUF1776         Fungal family of unknown function (DUF1776)
      0.002   18.0   0.0     0.0035   17.3   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
     0.0045   16.1   0.0     0.0061   15.7   0.0    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.046   13.6   0.0      0.074   12.9   0.0    1.3  1  DFP             DNA / pantothenate metabolism flavoprotein
      0.063   13.6   0.1       0.39   11.0   0.0    2.2  3  DPBB_1          Lytic transglycolase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   0.6   2.5e-50   5.6e-47       1     190 [.      10     193 ..      10     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.7 bits;  conditional E-value: 2.5e-50
                 SEEEEESTTS.HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGass.GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k+vlvtG+s+ GIG a+ +e+a++G+kv++++r+ e +e  +  +++       +++Dvtd e+v+++v+++v++ gk+dvLvnNAG+  +gp+ +ls 
  CDO69829.1  10 KIVLVTGCSAgGIGFALGEEYAARGCKVYATARRLESMEGFKHPVEK-------LKLDVTDDENVREVVKTIVEREGKIDVLVNNAGVLCTGPVIDLSM 101
                 79*****98537**********************9999777666554.......8******************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 ee+er ++ N+++v+ +++av+p+m +++sG+Ivn+sS +++ p ++   Y+++Kaa+++l+++l +e  p +i+v++ ++G+v++++++++
  CDO69829.1 102 EEIERAYDANVFSVIRMCKAVIPHMAARKSGTIVNISSLQAQIPTPWAGIYASTKAALQSLSETLYMECIPLNISVVVAVTGAVRSNITNNR 193
                 **************************************************************************************999875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.2   2.6e-37   5.8e-34       3     180 ..      19     191 ..      16     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 2.6e-37
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdral 99 
                   a gIG+a+ +++a++G++v +t ++ e+   +e ++   + e l++DVtd+e+v+++v+++ve+ gk+D+lvnnag+  +  gp++++s ee++ra 
    CDO69829.1  19 AGGIGFALGEEYAARGCKVYATARRLES---MEGFKH--PVEKLKLDVTDDENVREVVKTIVEREGKIDVLVNNAGVLCT--GPVIDLSMEEIERAY 108
                   48********************999888...444433..33349************************************..*************** PP

                   HHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2 100 dvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                   d n+ s+++++ka++p+m+++  g ivn+ss++a++ +p   +y+ +Kaal++l+ +l +e+ p +i v +   g+++ ++++
    CDO69829.1 109 DANVFSVIRMCKAVIPHMAARksGTIVNISSLQAQIPTPWAGIYASTKAALQSLSETLYMECIPLNISVVVAVTGAVRSNITN 191
                   ****************7776658**********************************************99999999988755 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   4.3e-12   9.6e-09      10     162 ..      20     165 ..       4     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.3e-12
                 SHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHH CS
          KR  10 GgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqv 108
                 Gg+G +l +  a++g + +  ++R          +++++e     ve +++Dv+d ++v++++++i ++e++i   ++ Agvl ++++ ++++e++e++
  CDO69829.1  20 GGIGFALGEEYAARGCK-VYATAR----------RLESMEGFKHPVEKLKLDVTDDENVREVVKTIVEREGKIDVLVNNAGVLCTGPVIDLSMEEIERA 107
                 44444444444444432.333333..........5788888899******************************************************* PP

                 HTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 109 lapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 + + v  +  + +++ +    ++   +v +SS+ + + ++  + Ya++ a l +l e+
  CDO69829.1 108 YDANVFSVIRMCKAVIPhmaaRKSGTIVNISSLQAQIPTPWAGIYASTKAALQSLSET 165
                 *****99999988876667779999*************************99999875 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   8.5e-10   1.9e-06     104     196 ..      92     181 ..      83     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 8.5e-10
     DUF1776 104 ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqik 196
                  tgp+  +++++++ +   +++s i + +a +p++++   +k+ +iv   s+ +++  p +++ a +  al++l e+L  e+ p+ni+v+   
  CDO69829.1  92 CTGPVIDLSMEEIERAYDANVFSVIRMCKAVIPHMAA---RKSGTIVNISSLQAQIPTPWAGIYASTKAALQSLSETLYMECIPLNISVVVAV 181
                 58**********************************9...89**********************************************98755 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.6e-06    0.0035       3     103 ..      19     144 ..      18     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES-..............--TCCHHH CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk.......gadaVvsal..............ggggkdee 76 
                      G++G +l +e +arg  +v a +R+ e+++ ++    +e +++dvtd e ++e++k        +d+ v ++                      
      CDO69829.1  19 AGGIGFALGEEYAARG-CKVYATARRLESMEGFK--HPVEKLKLDVTDDENVREVVKtiveregKIDVLVNNAgvlctgpvidlsmeE------- 103
                     599************5.**************997..4699*****************9999998777777777455443544443320....... PP

                     H..............HHHHHHHHHHCT--EEEEEEETTTTS CS
  NAD_binding_10  77 g..............aknivdaakeagvkRfvlvsaigvgd 103
                     +              +k+++  + + +   +v +s+++++ 
      CDO69829.1 104 IeraydanvfsvirmCKAVIPHMAARKSGTIVNISSLQAQI 144
                     13334445578888899999999999999999999998873 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0061       3      83 ..      12     116 ..       9     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
                    EEEES.TTSHHHHHHHHHCTTTSEEEEEE-TT..............T--TTSHHHHHHHH.....HHH--SEEEE-----....-HHHHHHSHHHH CS
  RmlD_sub_bind   3 ilvtG.anGqlGseLakqlaeeglevlaltre..............eldltdaeavaell.....keakpdvvvnaAAyt....avDkaEseeeaa 74 
                    +lvtG + G +G +L ++ a++g++v+a+ r+              +ld+td e+v+e++     +e k dv+vn A        +D   +e e+a
     CDO69829.1  12 VLVTGcSAGGIGFALGEEYAARGCKVYATARRlesmegfkhpveklKLDVTDDENVREVVktiveREGKIDVLVNNAGVLctgpVIDLSMEEIERA 107
                    789995579********************999****************************777777788999999885421111345555666666 PP

                    HHHHTHHHH CS
  RmlD_sub_bind  75 yavnaeave 83 
                    y +n+ +v 
     CDO69829.1 108 YDANVFSVI 116
                    666665554 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.3e-05     0.074      23      92 ..      14      90 ..       9     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
                EEE----HHHHHHHHHHHHTT-EEEEEE-S-.SS--...-TT-EEEE--SHHHHHHHHHHHHTT-...SEEEE---S CS
         DFP 23 isNrSSGkmGyalAeaaaarGaeVtlvsgpv.slet...pegvevvkvesaeemleaveealkea...divimaAAv 92
                ++  S G  G+al e+ aarG +V   +    s+e    p +   ++v++ e+ +e v++ ++++   d+++  A v
  CDO69829.1 14 VTGCSAGGIGFALGEEYAARGCKVYATARRLeSMEGfkhPVEKLKLDVTDDENVREVVKTIVEREgkiDVLVNNAGV 90
                67789*********************999952444232243333566777777777777666444445999999977 PP

>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.39      34      66 ..      72     102 ..      55     107 .. 0.78
   2 ?   -2.1   0.0       2.2   4.9e+03      60      79 ..     115     134 ..     114     139 .. 0.79
   3 ?   -1.0   0.0      0.98   2.2e+03      14      31 ..     130     147 ..     125     183 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                 T-EEEETT--EEEEEEEE----STTECEEE-HH CS
      DPBB_1  34 gtycrvlsgksvtVtitDrgpfppgrhiDLSka 66 
                 +t++ +  + ++ V +++ g  + g +iDLS++
  CDO69829.1  72 KTIVER--EGKIDVLVNNAGVLCTGPVIDLSME 102
                 444444..699********************87 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
                 CEEE-HHHHHHHT-TTTS-E CS
      DPBB_1  60 hiDLSkaAfeklakpraGvi 79 
                 +i + ka + ++a  ++G+i
  CDO69829.1 115 VIRMCKAVIPHMAARKSGTI 134
                 57788888889999988876 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.98
                 TTSSB--TTS-EEE-SSS CS
      DPBB_1  14 acGecyevkcltaahktl 31 
                 ++G + +++ l+a+ +t 
  CDO69829.1 130 KSGTIVNISSLQAQIPTP 147
                 567777777777777773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1935.11
//
Query:       CDO69830.1  [L=583]
Description: hypothetical protein BN946_scf184803.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   43.4   2.3    4.5e-11   42.5   0.3    2.5  2  F-box-like  F-box-like
  ------ inclusion threshold ------
        3.5    7.6   5.9          3    7.8   0.3    3.4  3  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3     5e-15   4.5e-11       2      46 ..      57     116 ..      56     118 .. 0.82
   2 ?   -1.0   0.1      0.18   1.6e+03      20      31 ..     208     227 ..     189     228 .. 0.63

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 5e-15
  F-box-like   2 srLPdEiLlqIFsyL.ppsd..............LlrlalVCrrWrrvaldtplLWrrlv 46 
                 +rLP E+L+ IF++  ++++              Ll +++VC++Wr+vald p LW+ + 
  CDO69830.1  57 NRLPAELLVFIFEHAtDTRSghrqrptvrarihsLLDVSHVCKQWRDVALDAPALWTCVD 116
                 69**********7654555566666677777777**********************9875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
  F-box-like  20 d........LlrlalVCrrW 31 
                          Ll+l+ +++ W
  CDO69830.1 208 MfsreyccnLLALSITSKAW 227
                 04555555599999****99 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3   0.00034         3       4      37 ..      57     105 ..      54     112 .. 0.85
   2 ?    0.4   0.0      0.07   6.3e+02      22      33 ..     216     227 ..     205     227 .. 0.90
   3 ?   -2.2   0.1      0.46   4.1e+03      18      47 ..     348     377 ..     346     378 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00034
                 HHS-HHHHHHHHHTS-HHH.................HHHHCTT-HHHHHHH CS
       F-box   4 srLPsevlrhILerLplsd.................llalrrVSkgwrili 37 
                  rLP e+l  I+e+   +d                 ll  + V+k wr++ 
  CDO69830.1  57 NRLPAELLVFIFEH--ATDtrsghrqrptvrarihsLLDVSHVCKQWRDVA 105
                 68999999999999..55568999999999999999************975 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.07
                 HHHHHCTT-HHH CS
       F-box  22 dllalrrVSkgw 33 
                  llal+ +Sk w
  CDO69830.1 216 NLLALSITSKAW 227
                 59********99 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.46
                 S-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box  18 LplsdllalrrVSkgwrilidsdrlwcksi 47 
                 L+  ++l  ++ + + +i++ +    ++++
  CDO69830.1 348 LSSLTRLEVSSLCDKIHIITEGSHSGLWIE 377
                 666677777888888888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3922.25
//
Query:       CDO69831.1  [L=501]
Description: hypothetical protein BN946_scf184803.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.7e-187  621.2   0.0   9.8e-187  621.1   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  621.1   0.0  5.5e-191  9.8e-187       1     462 []      30     492 ..      30     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 621.1 bits;  conditional E-value: 5.5e-191
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHT.TS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk.awa.klpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaid 95 
                 wv+++s ++i+vinP++g+ i+k+++++++dvd avaaA++af+ +w  + +  eRa++L+k+ dl+e+++++la+le+l++Gk+++ ar+ +v+ +i+
  CDO69831.1  30 WVDGSSgNKIDVINPSNGKLITKITEGSPKDVDLAVAAAQKAFDtTWGlHKNGFERARLLQKLGDLMEQNADKLAALEALDNGKTFNWARTtDVDHSIR 128
                 999999788***********************************8898345678********************************************* PP

                 HHHHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTC CS
      Aldedh  96 vlryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgs 194
                 ++ryya++a+k+ g+++++se kl +vr+eP+Gvv++I+PWNfPl ++awk+ pala+G++v+lKP+e tplsal +a+l++eag+P+g +n+++g+g+
  CDO69831.1 129 CIRYYAGWADKILGQTIETSEAKLVYVRHEPIGVVAQIIPWNFPLQMMAWKIGPALATGCSVILKPSEFTPLSALFVAQLIHEAGFPAGSFNLINGYGH 227
                 *******************99****************************************************************************** PP

                 CHHHHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 195 evgealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                  vg+al+eh++++k++ftGst vgrki++a +++nlk+vtlElGGk+p iv++daDl++av+++++g+++n GQ C+a+sr++v+e+iyd+f+++++e+
  CDO69831.1 228 VVGQALAEHNGIEKIAFTGSTLVGRKIMEAsSKSNLKKVTLELGGKSPSIVFDDADLEQAVKWAAFGIYYNHGQCCCAGSRIFVHEKIYDQFMQRFTEH 326
                 ******************************6669***************************************************************** PP

                 HHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHH CS
      Aldedh 293 akklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaN 391
                 +k+lkvgdp+d+++  GP++s++q++++++y++++keega++++Gg   e+  ++gy+++Pt+++nv+p+m+i++eEiFGPV +vikfkd+++++++aN
  CDO69831.1 327 TKSLKVGDPFDPEVFQGPQVSQQQYDRIMGYIKSGKEEGATIVTGG---ERLGQEGYYIQPTIFTNVKPSMKIVREEIFGPVCVVIKFKDDDDIVAMAN 422
                 **********************************************...77899********************************************* PP

                 SSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 392 dteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 dt yGLaa+v++++++ra+  a++++aG+v++N+ +   ++  pfgG+kqSg+Gre g+++l +yt vk+v
  CDO69831.1 423 DTIYGLAASVYSQNVTRALSTAHKIRAGTVWVNTANMLYPQV-PFGGYKQSGIGRELGEYALANYTAVKAV 492
                 ******************************************.**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3498.77
//
Query:       CDO69832.1  [L=161]
Description: hypothetical protein BN946_scf184803.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-14   54.8   0.0    1.9e-14   54.5   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00011   22.4   0.0      0.001   19.3   0.0    2.0  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0013   18.7   0.0     0.0075   16.2   0.0    1.9  2  FR47             FR47-like protein
     0.0029   17.3   0.0     0.0072   16.0   0.0    1.5  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
     0.0064   16.9   0.0     0.0087   16.5   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.041   13.5   0.0       0.36   10.4   0.0    2.0  1  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.2e-18   1.9e-14      64     137 ..      41     127 ..       6     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 6.2e-18
  Acetyltransf_3  64 g..viGsvglrdleeedee...aelgymla.psfwgkGyateavralleyafeel........glerlvavidkeNeaSirvleklGf 137
                     g  +iG+v+l+     de    +e+++m+a p+++++G+a+ a++ ll ya  ++          +rlva+i  +N  Sir++eklGf
      CDO69832.1  41 GlpMIGDVNLFLKGAPDEDdfeVEVEIMIAePAYRRRGIAQTALQLLLSYAT-DPaspsplpvPKDRLVARIGDKNAPSIRLFEKLGF 127
                     3658*******65555544667********555******************4.44477777777779********************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.5e-07     0.001      56     117 .]      58     127 ..       9     127 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.5e-07
                     TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTT........ESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  56 ekggvayieslaVspeyrgkGlGsaLlealeerareeg........ikkivlaveedndaairlYeklGF 117
                     e+  ++++e +   p+yr++G++++ l+ l+ +a +           +++v+ + + n ++irl+eklGF
      CDO69832.1  58 EDDFEVEVEIMIAEPAYRRRGIAQTALQLLLSYATDPAspsplpvpKDRLVARIGDKNAPSIRLFEKLGF 127
                     56677788888899*****************99998851222222134666688888************9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.33   9.8e+02      27      40 ..      68      81 ..      62      90 .. 0.79
   2 !   16.2   0.0   2.5e-06    0.0075      56      79 ..     106     129 ..     100     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.33
                EEE-GGG-SSSHHH CS
        FR47 27 lqvlpehrrrGlgs 40
                +  +p  rrrG ++
  CDO69832.1 68 MIAEPAYRRRGIAQ 81
                5668999****986 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.5e-06
                 -EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  56 tvllvvvasNtpsirlyeklGfek 79 
                  +++ ++ +N psirl+eklGf  
  CDO69832.1 106 RLVARIGDKNAPSIRLFEKLGFAI 129
                 56788999**************75 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06    0.0072      72     143 ..      55     133 ..      49     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
                     CS---TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHC..CT.....T--EEEE--BTT-HHHHHHHHHTT-EEEEEE CS
  Acetyltransf_8  72 yydaepgdrGiHlligeaeargkglttallralvhylfa..dp.....rtrrvvvEPdvrNerairllekaGfekekev 143
                     + d +++ + + ++i+e+++r++g++++ l+ l++y+ +  +p       +r v+    +N+ +irl+ek+Gf+  k+v
      CDO69832.1  55 APDEDDFEVEVEIMIAEPAYRRRGIAQTALQLLLSYATDpaSPsplpvPKDRLVARIGDKNAPSIRLFEKLGFAITKRV 133
                     5677899999***************************9544442133457899**99****************998876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.9e-06    0.0087      27      75 ..      65     128 ..      28     129 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-06
                     TEEEEE-GGGTTSSHHHHHHHH........TTSEEE..........EEEEEE..THH.HHHHHHHHTTEE CS
  Acetyltransf_7  27 itrlaVdpeyrgkGiGraLlea........aekgii..........leqlel..nae.kaikfYeklGFe 75 
                      + +   p+yr++Gi++  l++        a               l+ ++   + + ++i+++eklGF 
      CDO69832.1  65 VEIMIAEPAYRRRGIAQTALQLllsyatdpA----SpsplpvpkdrLV-ARIgdK-NaPSIRLFEKLGFA 128
                     33377789*************7455544441....0333333332211.222321.2488*********6 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.36     182     241 ..      63     134 ..      58     136 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
  GNAT_acetyltran 182 ieieidT.kedyrrkgLAtivaaalilecl...........krglyPsWDaaneaSvaLaekLGYefekeYk 241
                      +e+ei   +++yrr+g A+ + + l++ +            k  l+++   +n +S++L ekLG+  +k+ +
       CDO69832.1  63 VEVEIMIaEPAYRRRGIAQTALQLLLSYATdpaspsplpvpKDRLVARIGDKNAPSIRLFEKLGFAITKRVP 134
                      566666558999******999999998887222222222223445555544499999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1178.27
//
Query:       CDO69833.1  [L=233]
Description: hypothetical protein BN946_scf184803.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-75  251.6  18.4    6.3e-75  251.3  18.4    1.1  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3  18.4   3.5e-79   6.3e-75      11     206 ..      31     228 ..      23     229 .. 0.95

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 3.5e-79
  Gpr1_Fun34_YaaH  11 pvpkrkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsyaailipgfgila 104
                      +++ rk+++P Plgl +fa ttf+ls++n++argi +pnvvvg+alf+GGl+q++aG+wefa+ ntFgata+++YGgFw+s+++i+ipg gi+a
       CDO69833.1  31 SPYYRKLGDPGPLGLYGFASTTFILSMYNVQARGILTPNVVVGMALFVGGLAQFVAGMWEFATSNTFGATAFTMYGGFWMSFGTIFIPGSGITA 124
                      56789***************************************************************************************** PP

  Gpr1_Fun34_YaaH 105 aYeedeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsak..vlkAggvfgiiaaflawYnalagla.tken 195
                      aY ++++el++alg+yl++w+++tflll+atlr ++ l++lfffl++tf ll++g+++  ++  ++kAgg fgii+a++a+Y ++a+++ ++++
       CDO69833.1 125 AY-DSPSELESALGIYLFTWMVVTFLLLVATLRRNMGLVVLFFFLTITFALLGAGKFSVAHGvtLTKAGGGFGIITAMVAFYVGTAQMLnDRRS 217
                      **.8*****************************************************666665599********************99834567 PP

  Gpr1_Fun34_YaaH 196 syftlpviplp 206
                      s+f+lp  ++p
       CDO69833.1 218 SWFVLPLGQIP 228
                      89****99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1600.30
//
Query:       CDO69834.1  [L=682]
Description: hypothetical protein BN946_scf184803.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-24   85.4   0.0    1.1e-23   84.3   0.0    1.6  1  ABC_tran       ABC transporter
    4.7e-09   36.5   0.0    0.00074   19.4   0.0    2.3  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    4.4e-07   29.6   0.0       0.01   15.3   0.0    2.2  2  SMC_N          RecF/RecN/SMC N terminal domain
    2.6e-05   24.1   0.0     0.0015   18.4   0.0    2.1  2  AAA_15         AAA ATPase domain
     0.0021   18.5   0.0      0.004   17.6   0.0    1.5  1  AAA_16         AAA ATPase domain
     0.0021   17.4   0.0     0.0037   16.6   0.0    1.3  1  Zeta_toxin     Zeta toxin
     0.0024   17.6   0.0     0.0052   16.5   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
     0.0055   17.2   0.0     0.0096   16.4   0.0    1.3  1  AAA_23         AAA domain
     0.0073   16.6   0.0      0.032   14.5   0.0    2.0  1  AAA_22         AAA domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.026   14.3   0.0    1.6  1  AAA_30         AAA domain
      0.014   15.4   0.0      0.033   14.2   0.0    1.6  1  AAA_14         AAA domain
      0.047   13.5   0.1       0.11   12.3   0.1    1.5  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
      0.085   12.4   0.0       0.16   11.5   0.0    1.4  1  AAA_27         AAA domain
       0.17   11.0   0.0       0.26   10.4   0.0    1.2  1  G-alpha        G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   8.6e-27   1.1e-23       1     136 [.     415     605 ..     415     606 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 8.6e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................es 81 
                 l+nv + + +g++  ivG nG+GKSt+lkl+a+l++p+eG+il+dg+d+++ +l+ lr+ i+vl+q+ ++fp + +r+n                  + 
  CDO69834.1 415 LRNVCFRVLPGQLCIIVGANGSGKSTILKLVARLYDPDEGQILIDGHDIRTLKLRDLRQAISVLFQDYTHFPLS-IRDNialgdpsaaeneahvrlaA- 511
                 68999*******************************************************************99.*********99876655544440. PP

                 HTC...HHHHHHHSTTGG.................................TTCBGESTTSGGS-HHHHHHHHH..HHHHH.HTSS..EEEEESTT CS
                 xxx...xxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxx..xxxxx.xxxx..xxxxxxxx RF
    ABC_tran  82 dee...iekalsklglke.................................lkdtvvksspssLSgGqkqrval..arall.kkpk..llllDEpt 136
                   +   ++++++kl   +                                 + ++  +s++s LSgGq qr+a+  +r+++ ++pk  lll+DEp+
  CDO69834.1 512 --RlggAADFIEKLPEGYntyldrpvrdyyagipegtttlfgrkvdfrnvrFVAHLKQSDTSALSGGQMQRLAVtfMRSVVpEEPKvgLLLFDEPS 605
                 ..04444444444444446666666677777777777777777778777774444445667*********98862256665244544479999997 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.8e-07   0.00074       3      25 ..     429     451 ..     427     497 .. 0.80
   2 !   14.9   0.0   1.4e-05     0.018     253     297 ..     591     634 ..     557     635 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.8e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +++G+NgsGKS++L++   l + 
  CDO69834.1 429 IIVGANGSGKSTILKLVARLYDP 451
                 79***************999653 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
      AAA_21 253 ralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                    +k +lll+DEp ++L+P + + l+  l+el+  +   ++++H
  CDO69834.1 591 PEEPKVGLLLFDEPSASLDPVAEHDLFNRLRELRG-NKTMLFSSH 634
                 445566***************************88.777799999 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   8.1e-05       0.1      25      42 ..     426     443 ..     409     448 .. 0.79
   2 !   15.3   0.0   8.1e-06      0.01     116     204 ..     552     641 ..     446     653 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-05
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                 ++ +ivG+NGSGKs +l 
  CDO69834.1 426 QLCIIVGANGSGKSTILK 443
                 56789*********9985 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 8.1e-06
                 EEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--.SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpa.plyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 ++v +++v+ + + ++ + ++LSgG+ + +a+ ++ ++   +p+  l l+De  a LD    + + ++l+e + n  ++  s+r + l++
  CDO69834.1 552 RKVDFRNVRFVAHLKQSDTSALSGGQMQRLAVTFMRSVVPEEPKvGLLLFDEPSASLDPVAEHDLFNRLRELRGNKTMLFSSHRFGNLTR 641
                 444444444444444555569************9999877776527******************************99999999766654 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.1e-06    0.0015      25      78 ..     427     476 ..     415     532 .. 0.84
   2 ?    3.7   0.0     0.032        41     298     354 ..     574     626 ..     544     634 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.1e-06
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdik 78 
                 l +++G+N+sGKS+il++   + + +    +  i i+ +d+++ + ++  + i 
  CDO69834.1 427 LCIIVGANGSGKSTILKLVARLYDPD----EGQILIDGHDIRTLKLRDLRQAIS 476
                 789****************9999988....788899999998887766666555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.032
      AAA_15 298 GsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkeland 354
                 + G+++ l + +++    +      k  +ll++EP a+L p a   l++ l+el  +
  CDO69834.1 574 SGGQMQRLAVTFMRSVVPEE----PKVGLLLFDEPSASLDPVAEHDLFNRLRELRGN 626
                 66888888888888888888....9999***********************999665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.1e-06     0.004      18      76 ..     421     475 ..     411     627 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqal 76 
                 rv  g  +l++++G+ G+GKs++++ ++r +  d+g   + g+  +    + +  l qa+
  CDO69834.1 421 RVLPG--QLCIIVGANGSGKSTILKLVARLYDPDEGQIlIDGHDIRT---LKLRDLRQAI 475
                 55555..6899*****************9999997555377766666...3333333333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.9e-06    0.0037      18      57 ..     427     466 ..     422     484 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.9e-06
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 l +++G+ G+GKs++++l+++  +++++ + +d+ d+R+l
  CDO69834.1 427 LCIIVGANGSGKSTILKLVARLYDPDEGQILIDGHDIRTL 466
                 6799**********************************97 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.1e-06    0.0052      21      39 ..     424     442 ..     413     455 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.1e-06
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 + + ++++G++GsGKST+l
  CDO69834.1 424 PGQLCIIVGANGSGKSTIL 442
                 445789************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.5e-06    0.0096      21      37 ..     427     443 ..     413     447 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.5e-06
      AAA_23  21 ltlItGpNGaGKTTild 37 
                 l +I+G NG+GK+Til 
  CDO69834.1 427 LCIIVGANGSGKSTILK 443
                 779************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.5e-05     0.032       6      52 ..     426     467 ..     423     637 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..s 52 
                 ++++++G  G+GK+t l+ +++ +d ++       ++++++       +
  CDO69834.1 426 QLCIIVGANGSGKSTILKLVARLYDPDE-------GQILIDGHDIRtlK 467
                 6899*******************98644.......44444443333333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-05     0.026      19      49 ..     426     456 ..     417     466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrv 49 
                 ++++++G+ G+GK+t+lk ++++++ ++g++
  CDO69834.1 426 QLCIIVGANGSGKSTILKLVARLYDPDEGQI 456
                 699*******************999886565 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-05     0.033       3      58 ..     426     480 ..     424     493 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelile 58 
                 ++++i+Ga  +GK+t+lk +++ +  ++e  + i+  d r+ kl+d ++ ++++++
  CDO69834.1 426 QLCIIVGANGSGKSTILKLVARLYD-PDEGQILIDGHDIRTLKLRDLRQAISVLFQ 480
                 5789*************99997776.9999999****9999999988766655555 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.3e-05      0.11      29      49 ..      58      78 ..      49      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
                   TTTTSHHHHHHHHHHHTS-S- CS
  Dimer_Tnp_hAT 29 nsskyPnlsklardvLsipvs 49
                     ++ P +++++rdvLsip++
     CDO69834.1 58 VVACMPYVWRMLRDVLSIPAC 78
                   56899**************86 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.16      20      48 ..     419     447 ..     412     450 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      AAA_27  20 dfsaeeadlhliyGpNEAGKstalrAisd 48 
                  f+    +l +i+G+N +GKst+l+ + +
  CDO69834.1 419 CFRVLPGQLCIIVGANGSGKSTILKLVAR 447
                 56666779***************987765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0002      0.26      27      50 ..     429     452 ..     421     528 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                 EEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha  27 lllGqseSGKsTilkqlkllykkg 50 
                 +++G+++SGKsTilk + +ly++ 
  CDO69834.1 429 IIVGANGSGKSTILKLVARLYDPD 452
                 689******************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4577.97
//
Query:       CDO69835.1  [L=1448]
Description: hypothetical protein BN946_scf184803.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-54  183.3   2.7    4.4e-46  157.4   0.2    3.8  2  Y_phosphatase   Protein-tyrosine phosphatase
    8.4e-08   32.7   0.0    2.6e-07   31.1   0.0    1.9  1  Rhodanese       Rhodanese-like domain
     0.0026   17.8   0.0     0.0053   16.7   0.0    1.4  1  Y_phosphatase3  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.071   12.9   0.0       0.13   12.1   0.0    1.4  1  DSPc            Dual specificity phosphatase, catalytic domai


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.2   9.8e-50   4.4e-46       3     200 ..     576     875 ..     574     888 .. 0.87
   2 !   16.9   0.2   8.2e-07    0.0037     205     235 .]    1244    1274 ..    1236    1274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 9.8e-50
                    GGSSSTTS-B-CTTEEEBTTTTTTTT.EEEEEEEEECTEEEEEEEEE---GGGHHHHHHHHHHTT--EEEEESBSEETTEESS---S-SSTSSEEE CS
  Y_phosphatase   3 eknRykdilpydksrVklkssegpsd.YInAnyikgykkekkyIatQgPlkstvedFWrmvwqekvkvivmLtsleekgrekcaqYwpeeeeesle 97 
                     knRy++i p+++ rV+l++++ ++d Y+nA+y++   ++k+yIatQgPl+ t  dFW ++w+++v+vivmLt+++e ++ kc +Yw++ + ++l+
     CDO69835.1 576 AKNRYRNIWPFEHARVRLRKTKPDDDdYMNASYVQPLGTTKRYIATQGPLPATYTDFWTLCWEQNVHVIVMLTREIEGSSVKCGKYWEDGQYGPLR 671
                    59****************555444445*******88889*************************************************55555555 PP

                    ETTEEEEEE.......EEEEEESSEEEEEEEEEETTTTE.....................................EEEEEEEEEESSS-SSSSGS CS
  Y_phosphatase  98 ygkikvtlk......ekekedekeyvlrelevkkkkees.....................................eerevkqlqytnWpdhgvpe 150
                       ++ + +       +e+e++  +  +++   k k+++                                      +r v+q+qy +Wpd +vpe
     CDO69835.1 672 LRLLETNDTpeferkRRESETNGGFFSSHIPQPKPKQKTkkrkgnrgagdvqmqdketpstikrvfeltnsayplaPPRIVTQFQYLDWPDLNVPE 767
                    444444444544333333334444555555444444444888999999999999999999***************988999*************** PP

                    CCHHHHHHHHHHHHHH..........................................................STTSS-EEEECSSSSHHHHHHH CS
  Y_phosphatase 151 saksllklirkveksk..........................................................eaksgpvvVhCsaGvgRtgtfv 188
                    +++++l+lir+ve                                                              ++++pv+ hCsaGvgRtg f+
     CDO69835.1 768 DPRGVLDLIRQVEDTVeqsrsssekqwgegplyrrtrpkkpspersttqrgstvvmdksqavdqvdpitgvallAKENAPVLLHCSAGVGRTGGFI 863
                    *************99999********************************************************99******************** PP

                    HHHHHHHHHHHH CS
  Y_phosphatase 189 aldillqqleae 200
                    a+d++l+ +++e
     CDO69835.1 864 AVDAVLDGVRRE 875
                    ******998875 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 8.2e-07
                     HHHHHHHHHTTSTTSS-SHHHHHHHHHHHHH CS
  Y_phosphatase  205 vlqivkelrkqRpgmvqtleqyiflyevile 235 
                     + ++++ +r+qR++++q+l qy+f++++i+e
     CDO69835.1 1244 IRRVIEDMREQRMSLCQSLRQYVFVHRAIIE 1274
                     567899**********************985 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   5.7e-11   2.6e-07       3     104 ..      49     168 ..      47     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 5.7e-11
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnv..skdtlsrakkseapllelpeellel....gidnkktvvvycdgggr.aaaaaallk....... 87 
                 + lk+ l+++++ +lD+Rp + Y + +I++A+++  +++ l+r+ +s ++l++++   +++    ++ + +++ vy++++       +++l        
  CDO69835.1  49 SSLKAVLSDPSALILDIRPHNSYVQARIRNALSLavPSTLLKRPLFSLSRLADMLPTSSARekfsKWPEATRILVYDADSATiP---QHTLNsnllglm 144
                 6788999999989***********************8888888888888888887777777799999**********9999944...444443334566 PP

   Rhodanese  88 ....klGy...knvsvldGGfkaw 104
                     + Gy   k+v  l+GGf+a 
  CDO69835.1 145 rkfrSEGYpadKEVAWLRGGFHAV 168
                 5554366666366********985 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-06    0.0053     114     150 ..     838     875 ..     765     880 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-06
  Y_phosphatase3 114 fealadee.pvlfHCtaGKDRTGvlaalllsllGvdee 150
                     +  la+e+ pvl HC+aG  RTG ++a+   l Gv +e
      CDO69835.1 838 VALLAKENaPVLLHCSAGVGRTGGFIAVDAVLDGVRRE 875
                     345666557**************999987777777665 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.9e-05      0.13      69      92 ..     841     864 ..     822     865 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
                 HHHTT-EEEEEESSSSSHHHHHHH CS
        DSPc  69 akqkgkkvlVHCqaGisRSatlii 92 
                 +++++  vl HC aG+ R++ +i+
  CDO69835.1 841 LAKENAPVLLHCSAGVGRTGGFIA 864
                 58999**************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 9026.42
//
Query:       CDO69836.1  [L=513]
Description: hypothetical protein BN946_scf184803.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-05   24.3   1.3      9e-05   22.3   0.1    2.7  3  F-box-like  F-box-like
     0.0027   18.1   3.0        1.4    9.4   0.1    4.7  6  LRR_4       Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.068   12.9   0.6       0.49   10.2   0.1    2.8  3  LRR_8       Leucine rich repeat
      0.095   12.1   0.1       0.15   11.5   0.1    1.2  1  V-ATPase_C  V-ATPase subunit C


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1     2e-08     9e-05      16      45 ..      26      55 ..       2      58 .. 0.90
   2 ?   -1.3   0.0      0.46   2.1e+03       1      10 [.     132     141 ..     132     163 .. 0.70
   3 ?   -2.9   0.0       1.5   6.6e+03      20      30 ..     225     236 ..     219     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2e-08
  F-box-like 16 LppsdLlrlalVCrrWrrvaldtplLWrrl 45
                +p ++Ll++++VC++Wr+++l  p +W+r 
  CDO69836.1 26 VPIRSLLSITHVCSKWRTAVLQRPTFWTRA 55
                57899**********************995 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.46
  F-box-like   1 isrLPdEiLl 10 
                 i+rLPdE   
  CDO69836.1 132 IDRLPDEAWQ 141
                 5789988655 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.5
  F-box-like  20 dLlrl.alVCrr 30 
                  L+rl +l+C +
  CDO69836.1 225 KLSRLrTLTCTQ 236
                 489988999986 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1       0.1   4.6e+02       1      14 [.      95     110 ..      85     136 .. 0.57
   2 !    9.4   0.1   0.00032       1.4      19      33 ..     169     183 ..     163     191 .. 0.82
   3 !    9.0   1.0   0.00043       1.9       1      30 [.     173     206 ..     173     216 .. 0.70
   4 ?    2.2   0.0     0.061   2.8e+02       2      30 ..     200     234 ..     199     241 .. 0.61
   5 ?   -1.2   0.0       0.7   3.1e+03      16      30 ..     249     264 ..     227     273 .. 0.68
   6 ?   -1.0   0.0      0.62   2.8e+03      17      32 ..     395     408 ..     392     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
                 SS--EEE--..SS--- CS
       LRR_4   1 pnLevLdLs..nNqlt 14 
                 p+L+ LdL+  + +  
  CDO69836.1  95 PRLRRLDLRlsDQNCD 110
                 4455555554433344 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00032
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 ++ +pnL++L+Ls+N
  CDO69836.1 169 PYHFPNLTHLYLSFN 183
                 456899999999887 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00043
                 SS--EEE--SS---.E-S-...HHH-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNqlt.dipl...leklpnLkeLdL 30 
                 pnL++L+Ls N     ++l   l+ lp L++L+L
  CDO69836.1 173 PNLTHLYLSFNFTGrRVELkalLSTLPMLEHLHL 206
                 7999999998775544444443445888888888 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.061
                 S--EEE--SS---E-S-........HHH-TT--EEE- CS
       LRR_4   2 nLevLdLsnNqltdipl........leklpnLkeLdL 30 
                  Le+L+L+   l++ ++        + kl  L++L++
  CDO69836.1 200 MLEHLHLHA--LSKENStvvpfdgvPVKLSRLRTLTC 234
                 677777773..55333334442334459999999998 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.7
                 -S-HHH.-TT--EEE- CS
       LRR_4  16 ipllek.lpnLkeLdL 30 
                 i+++   +  L++L++
  CDO69836.1 249 IEFPVEtMVRLQQLTC 264
                 4444433888888888 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.62
                 S-HHH-TT--EEE-.- CS
       LRR_4  17 plleklpnLkeLdLsg 32 
                 p+le l  L+++++ +
  CDO69836.1 395 PWLE-LEELESIYI-D 408
                 7889.999**9999.3 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.84   3.8e+03      25      32 ..      95     102 ..      88     105 .. 0.60
   2 ?   10.2   0.1   0.00011      0.49      22      57 ..     170     207 ..     156     208 .. 0.86
   3 ?   -2.8   0.0       1.3   5.7e+03       6      21 ..     333     348 ..     333     349 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.84
                 TT--EEE- CS
       LRR_8  25 snLkvLdL 32 
                 ++L+ LdL
  CDO69836.1  95 PRLRRLDL 102
                 33444443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
                 TT-TT--EEE--SS.---GGGGGG.GTT--S-.EEE-- CS
       LRR_8  22 kglsnLkvLdLsnN.llttlspga.fsgLpsLrsLdLs 57 
                 ++++nL++L+Ls N + ++++ +a +s Lp L++L+L 
  CDO69836.1 170 YHFPNLTHLYLSFNfTGRRVELKAlLSTLPMLEHLHLH 207
                 5789**********999999987725789999999996 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
                 EE-TTS--SEE-TTSS CS
       LRR_8   6 LdLsnNrltslddeaF 21 
                 L+L+  ++++++ +aF
  CDO69836.1 333 LSLDMEKIEEIHTSAF 348
                 5677777888888888 PP

>> V-ATPase_C  V-ATPase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.2e-05      0.15     170     201 ..     354     385 ..     337     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
  V-ATPase_C 170 edfvldseyLttllViVpknsekewlksYekl 201
                 e+fv++  +L+tl V+V  +++++w +sY ++
  CDO69836.1 354 EEFVHSARHLKTLRVVVSDQEDEDWMSSYRFF 385
                 79**9************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3308.43
//
Query:       CDO69837.1  [L=714]
Description: hypothetical protein BN946_scf184803.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-24   86.7   0.0    6.2e-24   85.1   0.0    1.9  1  ABC_tran     ABC transporter
    1.9e-09   37.8   0.0    0.00017   21.5   0.0    2.4  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.5e-06   26.0   0.0      0.086   12.3   0.2    2.2  2  SMC_N        RecF/RecN/SMC N terminal domain
      3e-05   23.9   0.0    0.00072   19.4   0.0    2.1  2  AAA_15       AAA ATPase domain
    0.00089   19.8   0.0      0.002   18.7   0.0    1.5  1  AAA_23       AAA domain
      0.001   18.7   0.0     0.0022   17.7   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0055   16.4   0.0      0.012   15.4   0.0    1.4  1  AAA_30       AAA domain
     0.0083   16.4   0.0      0.029   14.7   0.0    1.9  2  AAA_22       AAA domain
     0.0091   15.6   0.0      0.017   14.7   0.0    1.4  1  AAA_27       AAA domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.024   13.9   0.0    1.3  1  Zeta_toxin   Zeta toxin
      0.017   15.5   0.0      0.051   14.0   0.0    1.8  1  AAA_16       AAA ATPase domain
      0.078   12.9   0.1       0.14   12.0   0.1    1.4  1  APS_kinase   Adenylylsulphate kinase
       0.12   12.4   0.0       0.26   11.3   0.0    1.6  1  AAA_14       AAA domain
       0.13   12.2   0.0       0.25   11.2   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
       0.14   12.3   0.0       0.27   11.4   0.0    1.5  1  AAA_33       AAA domain
       0.21   11.2   0.0       0.38   10.4   0.0    1.3  1  SRP54        SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   5.5e-27   6.2e-24       1     136 [.     445     637 ..     445     638 .. 0.80

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 5.5e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTC...... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx...... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdee...... 84 
                 l++vs+kl +g++ +ivG nG+GKSt+lkl+a+l++ ++G+illdg+d+++ +l+ lr+  +vl+q+ ++fp + +r+n         ++de+      
  CDO69837.1 445 LRDVSFKLDAGQLCVIVGANGSGKSTILKLVARLYDVENGQILLDGHDIRTLRLHDLRQATSVLFQDYTHFPLS-IRDNialgdpahfWDDEHvrraar 542
                 689*********************************************************************99.***********9944444222333 PP

                 ...HHHHHHHSTTGG.................................TTCBGESTTSGGS-HHHHHHHHHHHHHHH.......TSSEEEEESTT CS
                 ...xxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx RF
    ABC_tran  85 ...iekalsklglke.................................lkdtvvksspssLSgGqkqrvalarallk.......kpkllllDEpt 136
                    +e+++++l                                      + +   +s+ sLSgGq qr+a+ r++++       k  lll+DEp+
  CDO69837.1 543 lggAEEFIDRLPEGFdtylerpvsdyfsgmpegtktlfgrpidysgvrGAGRMSAHSGPSLSGGQMQRLAVSRTFMRsvvsedaKVGLLLFDEPS 637
                 44444444444433377777777778888888889999999898888766666667779***************997333333245688888886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.5e-07   0.00017       3      26 ..     459     484 ..     457     531 .. 0.80
   2 !   13.9   0.0   3.2e-05     0.036     255     297 ..     625     666 ..     602     667 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllarl..d 26 
                 v++G+NgsGKS++L++   l ++   
  CDO69837.1 459 VIVGANGSGKSTILKLVARLYDVenG 484
                 9****************999887552 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.2e-05
      AAA_21 255 lkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 + k +lll+DEp ++L+P + + l+  l+el+  +   ++++H
  CDO69837.1 625 DAKVGLLLFDEPSASLDPTAEHDLFARLRELRG-NKTMVFSSH 666
                 33449********************99999988.777799999 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   7.6e-05     0.086      25      42 ..     456     473 ..     441     476 .. 0.79
   2 !   11.5   0.0   0.00014      0.15     111     204 ..     486     673 ..     473     685 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.6e-05
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                 ++ +ivG+NGSGKs +l 
  CDO69837.1 456 QLCVIVGANGSGKSTILK 473
                 4679**********9985 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00014
                 EEETTEEE-HHHHHHHHHCTT-STT.......................................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
       SMC_N 111 ykingkevtkkevsellesagiske.......................................................................... 135
                 + ++g++++   +++l + + +  +                                                                          
  CDO69837.1 486 ILLDGHDIRTLRLHDLRQATSVLFQdythfplsirdnialgdpahfwddehvrraarlggaeefidrlpegfdtylerpvsdyfsgmpegtktlfgrpi 584
                 555555555555555555555544456666666666666666666666666666666666666666666666666666667777777777777777777 PP

                 .................CS-HHHHHHHHHHHHHH...HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 .................xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .................lLSgGektLvalaLlfA...iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                                  +LSgG+ + +a++  f    + +  +  l l+De  a LD +  + +  +l+e + n  ++  s+r + l++
  CDO69837.1 585 dysgvrgagrmsahsgpSLSGGQMQRLAVSRTFMrsvVSEDAKVGLLLFDEPSASLDPTAEHDLFARLRELRGNKTMVFSSHRFGNLTR 673
                 777777777777777779*******9999988887778888999****************************99999999998766554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.5e-07   0.00072      17      65 ..     450     493 ..     444     510 .. 0.74
   2 ?    2.3   0.0       0.1   1.1e+02     318     355 ..     622     659 ..     603     666 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.5e-07
      AAA_15  17 veidlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedl 65 
                 +++d    l v++G+N+sGKS+il++   + + +    +  i ++ +d+
  CDO69837.1 450 FKLDAGQ-LCVIVGANGSGKSTILKLVARLYDVE----NGQILLDGHDI 493
                 4455555.*****************987777766....55555555555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.1
      AAA_15 318 dekeeknvilliEEPEahLHpqaqkvlikllkelandn 355
                  ++++k  +ll++EP a+L p a   l+  l+el  ++
  CDO69837.1 622 VSEDAKVGLLLFDEPSASLDPTAEHDLFARLRELRGNK 659
                 34668899********************9999997665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.7e-06     0.002      11      37 ..     446     473 ..     441     476 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.7e-06
      AAA_23  11 rdqeidFsk.gltlItGpNGaGKTTild 37 
                 rd+++ ++   l +I+G NG+GK+Til 
  CDO69837.1 446 RDVSFKLDAgQLCVIVGANGSGKSTILK 473
                 6667777663699*************96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     2e-06    0.0022      14      39 ..     447     472 ..     442     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2e-06
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTll 39 
                 + ++++d  + ++++G++GsGKST+l
  CDO69837.1 447 DVSFKLDAGQLCVIVGANGSGKSTIL 472
                 466778855599*************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05     0.012      18      50 ..     455     487 ..     449     495 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrvi 50 
                  +++v++G+ G+GK+t+lk ++++++ ++g+++
  CDO69837.1 455 GQLCVIVGANGSGKSTILKLVARLYDVENGQIL 487
                 4699*********************99977765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-05     0.029       5      43 ..     455     496 ..     452     515 .. 0.79
   2 ?   -3.1   0.0       7.9   8.9e+03      88     115 ..     623     655 ..     606     664 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...erpevv 43 
                  +++v++G  G+GK+t l+ +++ +d e+ +     ++ +++
  CDO69837.1 455 GQLCVIVGANGSGKSTILKLVARLYDVENGQILldgHDIRTL 496
                 5789*********************98776665666555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.9
      AAA_22  88 arav.ielliiDEaqh.lr...seealeeLrsl 115
                 + ++ ++ll+ DE    l+   +++++  Lr+l
  CDO69837.1 623 SEDAkVGLLLFDEPSAsLDptaEHDLFARLREL 655
                 333346888888877767664336666666665 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-05     0.017      18      51 ..     447     479 ..     442     505 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAisdllf 51 
                  ++f+ ++ +l +i+G+N +GKst+l+ + +l +
  CDO69837.1 447 DVSFKLDAGQLCVIVGANGSGKSTILKLVARL-Y 479
                 567777899*****************977664.5 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.024      18      58 ..     457     497 ..     449     515 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 l +++G+ G+GKs++++l+++  + +++ + ld+ d+R+l 
  CDO69837.1 457 LCVIVGANGSGKSTILKLVARLYDVENGQILLDGHDIRTLR 497
                 6789********************99999*********974 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.5e-05     0.051      22      55 ..     455     486 ..     440     566 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggif 55 
                 g  +l++++G+ G+GKs++++ ++r +  ++g  
  CDO69837.1 455 G--QLCVIVGANGSGKSTILKLVARLYDVENGQI 486
                 3..7899****************98766665444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00012      0.14       5      49 ..     458     501 ..     454     506 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT- CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdL 49 
                   + G  gsGKsti + ++ +L +     +lLdG  +R+   +dL
  CDO69837.1 458 CVIVGANGSGKSTILKLVA-RLYDVENGQILLDGHDIRTLRLHDL 501
                 5678**********98777.799999999*********9766666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.26       3      36 ..     456     488 ..     454     522 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyi 36 
                 +++vi+Ga  +GK+t+lk +++ + v++ +il +
  CDO69837.1 456 QLCVIVGANGSGKSTILKLVARLYDVENGQIL-L 488
                 6789*************999866666666554.3 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.25      89     125 ..     444     481 ..     429     492 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  +l++++ +l+  +++v+vG  G GKSt+++ ++   ++
   CDO69837.1 444 ALRDVSFKLDAgQLCVIVGANGSGKSTILKLVARLYDV 481
                  677888888887****************9987765555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.27       1      39 [.     457     500 ..     457     545 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
      AAA_33   1 lvllvGlpGsGKstlaerllkklg....avllssdtlrr.rlfg 39 
                 l ++vG++GsGKst ++ +++  +     +ll+  ++r+ rl  
  CDO69837.1 457 LCVIVGANGSGKSTILKLVARLYDvengQILLDGHDIRTlRLHD 500
                 5789**********999886543344457888888877766654 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00034      0.38       4      38 ..     458     492 ..     456     504 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38 
                 +++vG +G+GK t l  +a+l+  e+ ++ll   D
  CDO69837.1 458 CVIVGANGSGKSTILKLVARLYDVENGQILLDGHD 492
                 689*************9*****9999999998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 4438.43
//
Query:       CDO69838.1  [L=139]
Description: hypothetical protein BN946_scf184803.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-36  124.5   2.3    2.9e-36  124.3   2.3    1.1  1  UMP1           Proteasome maturation factor UMP1
  ------ inclusion threshold ------
        0.3   11.1   3.0        1.5    8.8   0.3    2.1  2  MHC2-interact  CLIP, MHC2 interacting


Domain annotation for each model (and alignments):
>> UMP1  Proteasome maturation factor UMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   2.3   3.2e-40   2.9e-36       4     118 .]      24     137 ..      21     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 3.2e-40
        UMP1   4 pglhdtlraGlkslksqlnssHpLesrlknweetqeklklemlrniyGlaePlrrqmElkivskterkPlalgssnlhldiLtGkdesidfeDvlndpe 102
                  glhdtl+ G++sl+++++++  +++rl+nwe+tq++lkl+m r+++Gl++P+r +mE+k++s + ++P+ l++sn+hldiL+G+de++d  D++  ++
  CDO69838.1  24 FGLHDTLQYGPRSLAAEVSTNSNIKDRLENWEATQDNLKLQMHRQVFGLHMPMRLMMERKLASYNPHMPV-LQQSNVHLDILMGRDETLDTADFMMPTS 121
                 789*******************************************************************.************************9889 PP

        UMP1 103 eseevkdvhsemErkl 118
                 e++++ d+h+ mE+kl
  CDO69838.1 122 EMKQPLDIHADMEKKL 137
                 999999********97 PP

>> MHC2-interact  CLIP, MHC2 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   0.00017       1.5      58      91 ..      48      80 ..      45      90 .. 0.84
   2 ?    2.8   0.2     0.012   1.1e+02      54      93 ..      93     133 ..      90     139 .] 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00017
  MHC2-interact 58 kgqitkLektsenLklellrrklpkaskPkkmal 91
                   k+++++ e t++nLkl++ r+ ++    P+++++
     CDO69838.1 48 KDRLENWEATQDNLKLQMHRQVFGLH-MPMRLMM 80
                   7999************9888888776.8988776 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.012
  MHC2-interact  54 vyqQkg.qitkLektsenLklellrrklpkaskPkkmalPl 93 
                    v+qQ++ +++ L    e+L +   ++ +++ ++P  ++  +
     CDO69838.1  93 VLQQSNvHLDILMGRDETLDTADFMMPTSEMKQPLDIHADM 133
                    67776558999***********************8777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1002.86
//
Query:       CDO69839.1  [L=1117]
Description: hypothetical protein BN946_scf184803.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-54  183.9   0.0    1.4e-38  132.1   0.0    2.4  2  PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
      2e-39  133.5  10.5    5.8e-21   74.3   0.3    2.9  3  WGR       WGR domain
    7.5e-29  100.7  10.5    5.5e-13   49.0   0.0    4.5  6  PARP      Poly(ADP-ribose) polymerase catalytic domain
  ------ inclusion threshold ------
       0.24   11.2   2.0       0.29   10.9   0.4    1.9  2  DAAD      Dictyosteliid AID/APOBEC-like Deaminase


Domain annotation for each model (and alignments):
>> PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   3.1e-42   1.4e-38       1     136 []     315     459 ..     315     459 .. 0.96
   2 !   49.5   0.0   9.7e-17   4.4e-13      52     136 .]     894     987 ..     887     987 .. 0.88

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 3.1e-42
    PARP_reg   1 skLpkevqeLiklifdvelmkkamkeleiDlkkmPLGkLskeqikkgyevLkelselikkkekaek.....lkeklldlsneFytlIPhdfgrkrppvi 94 
                 skLp+e+q L++lif+ +l++++++++++D++k+PLGkL k++i +g+++Lk+lse+i++++ + +     +++++++l+ ++y++IPh fgr+rp vi
  CDO69839.1 315 SKLPPEIQTLCRLIFNTSLIDAHLSSMHYDANKLPLGKLAKSTILNGFSALKSLSEVISQPNGDVArnyggFRRAVEELTGQYYSIIPHVFGRDRPIVI 413
                 8************************************************************9976345677**************************** PP

    PARP_reg  95 dteeelkkklellesLsdievaskllkaekeekee....hpldrhY 136
                 d++++lkk+lel+++L d+e+askl+++++ ++++    +pld h+
  CDO69839.1 414 DNAATLKKELELVDALGDMEIASKLISSTTPKDASgrpvNPLDAHF 459
                 ****************************9999988999*****998 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 9.7e-17
    PARP_reg  52 kelselikkkekae..k...lkeklldlsneFytlIPhdfgrkrppvidteeelkkklellesLsdievaskllkaekeekee....hpldrhY 136
                 +++ e++ +++ ++  +   ++++++ l+ ++y++IPh fgr rp vi++ e l+++lel+++L d++v+s+++ ++  ++e+    +pld ++
  CDO69839.1 894 QRIAEVLAEPDGETarShggFQQATEALTGQYYSIIPHVFGRGRPIVINSVERLRTELELVDALGDMTVTSEVIASAIPKDEDgrpiNPLDARF 987
                 5677777777765544156799******************************************************998888889999999876 PP

>> WGR  WGR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   2.4         4   1.8e+04      55      71 ..      88     104 ..      82     113 .. 0.47
   2 !   74.3   0.3   1.3e-24   5.8e-21       1      76 [.     191     267 ..     191     270 .. 0.93
   3 !   66.1   0.0     5e-22   2.2e-18       1      78 [.     739     817 ..     739     819 .. 0.93

  Alignments for each domain:
  == domain 1  score: -5.7 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHSS CS
         WGR  55 eeAikefeklfaeKtkk 71 
                 ++A++e e+  +eK +k
  CDO69839.1  88 DDAVAEDEAEEKEKEEK 104
                 44444444444444433 PP

  == domain 2  score: 74.3 bits;  conditional E-value: 1.3e-24
                 EEEEEEEEETTTTEEEEEEEEE.EE-T.TS-EEEEEE-S-TTS----EEEEESSHHHHHHHHHHHHHHHHSS-STTG CS
         WGR   1 ydlyleqtdiarnsnkFYkiqlleddl.fggyslfvrWGRiGtrGqtklksfdseeeAikefeklfaeKtkkgyeer 76 
                 +d++l+qtdi++n nkFY iqll++ + +++++l++rWGR+G++Gq++ k   s+++A++ef+k f++K + ++e r
  CDO69839.1 191 WDAMLNQTDIGKNANKFYVIQLLHPVGdNSQCTLYTRWGRVGENGQSQKKGPWSAATAVREFKKQFKAKAGVDWEHR 267
                 689********************9865156699*****************999*********************987 PP

  == domain 3  score: 66.1 bits;  conditional E-value: 5e-22
                 EEEEEEEEETTTTEEEEEEEEE.EE-TTS-.EEEEEE-S-TTS----EEEEESSHHHHHHHHHHHHHHHHSS-STTGGG CS
         WGR   1 ydlyleqtdiarnsnkFYkiqlleddlfgg.yslfvrWGRiGtrGqtklksfdseeeAikefeklfaeKtkkgyeeree 78 
                 +d++l+qt++++n nkFY +q+l++++++  + lf+ WGR+G++G+ k ++    e Aik+f+k f++K +  +eer +
  CDO69839.1 739 WDAVLNQTNVGKNANKFYVLQILHPTGNKSeCVLFRHWGRVGEKGEFKGETPCPPEMAIKQFKKRFRSKAGVPWEERMN 817
                 5899********************9977654899******************************************975 PP

>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.0       1.2   5.5e+03     135     166 ..      55      86 ..      37     115 .. 0.58
   2 ?   -3.5   1.4       1.5   6.7e+03     151     161 ..     117     127 ..      75     159 .. 0.49
   3 ?   -3.0   0.1         1   4.7e+03     136     162 ..     290     317 ..     278     327 .. 0.52
   4 !   10.0   0.0   0.00011      0.48       1      33 [.     474     507 ..     474     511 .. 0.92
   5 !   49.0   0.0   1.2e-16   5.5e-13     105     194 ..     509     612 ..     506     613 .. 0.88
   6 !   46.8   0.0   5.6e-16   2.5e-12      16      75 ..    1030    1094 ..    1018    1100 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.2
                 TT-SEEEE-EEEEEGG.EEETTE--S-EEE-S CS
        PARP 135 kgkksvkgkgktepesivekdgvPlgkssatk 166
                 +gk   kgkgk+  ++ +++++v +g  ++ +
  CDO69839.1  55 TGKVAAKGKGKKRAREESDEEDVADGATQNGE 86 
                 45555666666666444444444444332222 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
                 .EEETTE--S- CS
        PARP 151 ivekdgvPlgk 161
                   ++d+ ++gk
  CDO69839.1 117 ADADDDKDDGK 127
                 12222233333 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1
                 T-SEEEE-EEEEEGG.EEETT..E--S-E CS
        PARP 136 gkksvkgkgktepesivekdg..vPlgks 162
                 + +s k ++k ++ s +e+++  +P +k 
  CDO69839.1 290 EDTSKKTDKKASS-SKQEDEDsmIPESKL 317
                 3333333333333.333333358888776 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00011
                 SHHHHHHHHHHHHTS-TTTT.EEEEEEEEEEEEE CS
        PARP   1 seeykeiekylkktldstha.yklkileifrvqr 33 
                 s e++ +e+y+++t+++th+ yk+++l+ frv+ 
  CDO69839.1 474 SGEFSALETYTRETHGATHQhYKVDVLNAFRVES 507
                 569*****************************86 PP

  == domain 5  score: 49.0 bits;  conditional E-value: 1.2e-16
                 SS-EEEEEEEEEE--SEEEESS--T.G..CCGGTT-SEEEE-EEEEE.........GG.EEETT..E--S-EEE-S--SSSEEE-EEEESSGGGEEEEE CS
        PARP 105 kkgsglllLaeValGdikeltkady.l..ekakkgkksvkgkgktep.........esivekdg..vPlgkssatkyesseleyneyvvydkeqvrlkY 189
                 ++++glllL+eVa    +e ++a+y +  +++k+g  s+kg+g+++p          ++ e  g  +P+g++++ +  ++ l+yney+vyd++q+rl+Y
  CDO69839.1 509 SDNTGLLLLCEVAAKPFYEQYQANYnAaeDCKKAGARSTKGLGRSQPndwqdagaaLNNPELRGchMPRGPARNVDDPNVYLQYNEYIVYDTSQIRLRY 607
                 5789**********99*********9778999***************9888766543445555599****99999999999****************** PP

                 EEEEE CS
        PARP 190 Llevk 194
                 Ll vk
  CDO69839.1 608 LLMVK 612
                 **997 PP

  == domain 6  score: 46.8 bits;  conditional E-value: 5.6e-16
                  -TTTT.EEEEEEEEEEEEETTHHHHCGCCGG....SS-EEEEEEEE-GGGHHHHHHH-S--S-TT CS
        PARP   16 dstha.yklkileifrvqregeaerfqekkk....lrnrrlLfHGsrltnvasilsqGLriappe 75  
                    t + +k+++l+ frv+re e+e++ +       +++r lL+HGsr+tn+a+il+qGLriapp 
  CDO69839.1 1030 YTTYTpTKVEVLHAFRVEREHETETWLKAGFdklpDGDRLLLWHGSRTTNFAGILKQGLRIAPPQ 1094
                  333335689*************9999986557788899************************996 PP

>> DAAD  Dictyosteliid AID/APOBEC-like Deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   5.4e+03      36      78 ..     260     303 ..     243     322 .. 0.62
   2 ?   10.9   0.4   6.5e-05      0.29      69     166 ..     616     718 ..     591     767 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
        DAAD  36 kglglthkvgyesyktcdaddklyfkifep.aleatnniflsia 78 
                  g++++h vg+   k  ++  +++++++e+  ++++    +s+ 
  CDO69839.1 260 AGVDWEHRVGMAPQKGKYVWLERSYEDEEEeDTSKKTDKKASSS 303
                 34588888887777777777777777766622333333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.5e-05
        DAAD  69 atnniflsiakeqaktplkskaptsvlqtmlklsdspfhsestiiksleseidsalpkpknskqdiryeytqeh.....eksiktsklitgeklkf.av 161
                 a+ +i    a   + +p  ++++++++ ++++   ++   +s  ik +  e+d++ +k++ + ++ r++ tq       + s kt+++     ++  ++
  CDO69839.1 616 AAMPIV-RRASTRIRKPSAKAVAVAAANAAMAAERTASSAKSKGIKRIRDESDDEREKKSPKSKRARKSPTQASaslkrASSGKTKDVTGTRRMDAvSK 713
                 556666.55566678888899999999999999999************************************997877767777777665555553134 PP

        DAAD 162 qsqir 166
                  s+i 
  CDO69839.1 714 RSKIP 718
                 45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1305  (0.0727871); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.25u 0.32s 00:00:01.57 Elapsed: 00:00:00.54
# Mc/sec: 6254.27
//
Query:       CDO69840.1  [L=169]
Description: hypothetical protein BN946_scf184803.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1183.84
//
Query:       CDO69841.1  [L=98]
Description: hypothetical protein BN946_scf184803.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 693.86
//
Query:       CDO69842.1  [L=968]
Description: hypothetical protein BN946_scf184884.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.8   0.1    2.6e-13   50.1   0.1    1.3  1  DUF659    Protein of unknown function (DUF 659)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   1.5e-17   2.6e-13       1     136 [.     343     478 ..     343     493 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.5e-17
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkvieevgaen.V..vq 96 
                 Ps++ L+++++  +v+++    +      + + ++i +Dg t +++r+l++f+v+c+++++ ++++d+s+e ktae+l++++ +v+  +  e  V  + 
  CDO69842.1 343 PSRKVLTTRIIPGTVKQYRSIAQ---LACKGKLVTIQCDGFTAANRRHLVSFMVTCERKVYTVRTFDTSTEPKTAENLVKMIYQVMRMLEDEWeVipIA 438
                 78888888888888888855555...588999********************************************************99998751257 PP

      DUF659  97 vitdnasnykkagklleekyptifwtpcaahclnlmledi 136
                 + td + + ++a  ++  ++++++   c+ah++++++ d 
  CDO69842.1 439 ITTDCSGESRAARARILGERSSLVTPDCYAHQVERVVIDY 478
                 7899999999***********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 6136.10
//
Query:       CDO69843.1  [L=190]
Description: hypothetical protein BN946_scf184884.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-07   30.5   0.1      9e-07   29.6   0.1    1.5  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1     5e-11     9e-07       1      93 []      42     137 ..      42     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 5e-11
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsg...tdpgtvtl....vLcagss.nnlksvktiasgiknsdgsytwtvpaslesggaYflqiv.sesnegiynyS 88 
                   tsP++g+v++ g++ t+tW++s+   +   ++ l    +L+   + ++l   +++a + + ++gs+++tvpa +++ ++Y + +  +++n+     S
    CDO69843.1  42 TSPKAGDVWPIGSNQTVTWDTSDipeEARNQTGLillgYLVGDDTdEHLGVNDPLAYNFPITAGSAQVTVPA-VKTRDDYVIVLFgDSGNT-----S 132
                   79*******************9987633355555111344445545669999********999*******77.9999********776665.....8 PP

  GPI-anchored  89 drFti 93 
                   ++Fti
    CDO69843.1 133 PKFTI 137
                   88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1136.32
//
Query:       CDO69844.1  [L=88]
Description: hypothetical protein BN946_scf184884.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 630.26
//
Query:       CDO69845.1  [L=654]
Description: hypothetical protein BN946_scf184884.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-25   88.1  52.6      3e-16   59.3  13.0    2.9  3  MFS_1     Major Facilitator Superfamily
    1.6e-21   76.8  18.3    2.9e-18   66.0   3.7    2.2  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3  13.0   3.3e-20     3e-16       6     179 ..      54     248 ..      50     292 .. 0.86
   2 ?   -1.7   5.3      0.12   1.1e+03     188     234 ..     410     483 ..     377     495 .. 0.61
   3 !   37.6  25.7   1.3e-13   1.2e-09       8     179 ..     468     646 ..     461     653 .. 0.74

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 3.3e-20
       MFS_1   6 flsalarsi.......lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqG 96 
                 +l ++++++       ++++lp  +++++ i  s +g+l +  ++g++++++ +G  sd +Gr   + ++l+l+a+++++++fa s++ +l+v+ ++ G
  CDO69845.1  54 CLCGFGWMAdnmwiqaIAIILP-RVQQHFAIRDSYVGTLSSSMFAGMMFGAVGWGTCSDLMGRTTAFNATLFLTAVFGIFASFA-SSFgWLCVSLFFLG 150
                 4444444444466666777777.99****************************************************8888895.5555********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg................Wravfyilaivsllafvlfllllpeepper 179
                    g+++p+ ++l+ +  pk  +   +  ls++fs+Ga+l +++g l++   +                W ++ ++l+ ++l +f+  +++++  +++r
  CDO69845.1 151 SSVGGSMPTDGTLLLEHMPK-GKQYLVTALSVFFSFGAVLSAVIGLLVIPTHScppapaecdvgsqnlgWKYLLIALGTITLTMFLARIVFFRLHESPR 248
                 ********************.777777799****************99988888999999999999999*****************7668887777766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.12
       MFS_1 188 e.....................kgtgpaplvp...awkallkdpvlw.....illialllfffgfsglltllplyl 234
                 +                      ++ ++pl+       ++l++   w     ++++a+  ++++++++ ++lp +l
  CDO69845.1 410 RrasrrmstassfmegkagralPRWLRSPLLAwidRVAMVLSPE--WlkttlLVWAAWWAMSLAYTMFNVYLPKLL 483
                 15555555555555444444443333333333222333344444..667777799999999999999999999864 PP

  == domain 3  score: 37.6 bits;  conditional E-value: 1.3e-13
       MFS_1   8 salarsilgpalplalaedlg.........ispseigllltlyalgaavaslplGrlsd.rfGrrrvlllglllfalglllllfasslwlllvlrvlqG 96 
                 ++la++++++ lp  l e+            s  e  + +++y+lg + +++++++l++ r+Grr+ l  + +++a+++++++++++ w++ ++ v  +
  CDO69845.1 468 MSLAYTMFNVYLP-KLLETRSpsggtggapKSLEESLWDVVIYSLGGCPGAILGAWLIEsRLGRRWSLAGSTFVTAFFCWVFVVVQHPWAVRASTVGIS 565
                 5667777777777.6666655222222332333345668899****************956*****************888885466679********* PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepper 179
                 l a a++++ + ++ ++f  + rg a g++sa + +G +++p+lgg l+    +++   y+  ++++la+ + +++l e++ er
  CDO69845.1 566 LSATAMWAVLYGWTPEIFGTKVRGTACGIASALSRIGGMIAPILGGTLLtIDHSFP--VYASIGIFVLAGFC-VIFLEEREGER 646
                 **********************************************9993333344..44444444444343.15555555444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   3.7   3.2e-22   2.9e-18      44     222 ..      84     276 ..      42     299 .. 0.86
   2 !   16.3   6.7   3.7e-07    0.0034     304     435 ..     518     639 ..     498     643 .. 0.77

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 3.2e-22
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++++g + s++++G ++G++  g+++d +GR  ++ ++ +l+ + ++   +a    s+  l+v+ +++G +vG+   +  +++ E  pk +  +lv+ 
  CDO69845.1  84 RDSYVGTLSSSMFAGMMFGAVGWGTCSDLMGRTTAFNATLFLTAVFGIFASFAS---SFGWLCVSLFFLGSSVGGSMPTDGTLLLEHMPKGK-QYLVTA 178
                 4678999***********************************************...9*****************************99987.679999 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-.............TTHHHHHHHCCHHHHHHHHHHG...GGS---HHHHHHTT-HHHHHHHHHH...HHHCHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsn.............adgwrillglqlvpallllill...lflPESPrylvekgkeeeakevlak...lrgeedadr 222
                   ++ +fG +++a++gl +  t++             + gw++ll     ++l++++++   + l ESPr+lv+ g+ eea e+l+     +g e+ d 
  CDO69845.1 179 LSVFFSFGAVLSAVIGLLVIPTHScppapaecdvgsqNLGWKYLLIALGTITLTMFLARivfFRLHESPRFLVHAGRPEEAIESLQLisrFNG-EELDL 276
                 9******************999999***********999******999999999997653225689******************997432222.33333 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.7e-07
                 HHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 304 tfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanfli 402
                 ++ a+++ +r+GRR  l  ++++ a++++++  v +++  +  +  ++++ ++a++++l++           +E+f ++vR++a  ia a++ +  ++ 
  CDO69845.1 518 ILGAWLIESRLGRRWSLAGSTFVTAFFCWVFVVVQHPWAVR-ASTVGISLSATAMWAVLYG---------WTPEIFGTKVRGTACGIASALSRIGGMIA 606
                 4556667789****777777777777777775444444444.3556666666666666665.........456************************** PP

                 HHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 403 sllfpiiteaigggyvflvfaglavlfiifvff 435
                  +l  +++   + ++v++  ++++++++ ++f+
  CDO69845.1 607 PILGGTLLTIDHSFPVYASIGIFVLAGFCVIFL 639
                 **9988887777799999999999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4870.83
//
Query:       CDO69846.1  [L=435]
Description: hypothetical protein BN946_scf184884.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3633.42
//
Query:       CDO69847.1  [L=615]
Description: hypothetical protein BN946_scf184884.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-44  152.7   0.0    9.1e-29  100.6   0.0    4.7  5  CMAS             Mycolic acid cyclopropane synthetase
    3.6e-07   30.8   0.0    7.7e-07   29.7   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    0.00044   19.8   0.0    0.00078   19.0   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0036   17.1   0.0      0.013   15.4   0.0    1.8  2  Methyltransf_23  Methyltransferase domain
     0.0079   16.9   0.0      0.019   15.7   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
     0.0094   15.7   0.0      0.015   15.0   0.0    1.2  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.057   12.5   0.0       0.12   11.4   0.0    1.4  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.068   12.9   0.0       0.13   12.0   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.094   12.0   0.0       0.15   11.3   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
        0.1   12.3   0.0       0.17   11.6   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0017       3.1       5      22 ..     144     161 ..     140     172 .. 0.87
   2 !    7.8   0.0   0.00098       1.8      24      45 ..     193     214 ..     190     221 .. 0.87
   3 !  100.6   0.0   5.1e-32   9.1e-29      39     179 ..     270     416 ..     253     439 .. 0.90
   4 !   30.3   0.0   1.3e-10   2.4e-07     185     241 ..     489     548 ..     467     556 .. 0.85
   5 ?   -0.7   0.0      0.39     7e+02     245     266 ..     571     592 ..     562     596 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
                 XXHHHHHHHHTS-HHHHC CS
        CMAS   5 kevenikahYDlsndffa 22 
                 ++++ni+ahYD+sn++f 
  CDO69847.1 144 NARKNISAHYDISNNMFM 161
                 6789***********995 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00098
                 TS-TT---S----SSTT--HHH CS
        CMAS  24 fldptmtYsCAyferddmtLee 45 
                 fl ++mtYsCA+f + d +L++
  CDO69847.1 193 FLSRDMTYSCAIFPDLDGDLQS 214
                 7899**********99888875 PP

  == domain 3  score: 100.6 bits;  conditional E-value: 5.1e-32
                 TT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---....--SEEE CS
        CMAS  39 ddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde....kvdrvv 132
                 +++ Le+Aq++Kl++i++k++++pG+++L+iG GWG+l++   +      v  lTlS++qa+la++r ++++++++v+v+l+dy+ ++      +dr+v
  CDO69847.1 270 ASDPLEAAQYRKLRHIIRKADIRPGHRVLEIGSGWGALAILITSTIpHTTVDTLTLSTQQAELARARAAAAGVADRVHVHLMDYRSMPRewegAFDRLV 368
                 56789********************************9988777752578889********************************998767779***** PP

                 EES-GGGTSGGGHHHHHHHHHHHS.-TT-EEEEEEEEE--HHHHHCTT CS
        CMAS 133 svgafehvgkenydtffkklkkll.kedGllllhtitslhkkelaerg 179
                 sv+++e+vg e  +t+++k++ +l ke G+ ++++it+++ +e ++ +
  CDO69847.1 369 SVEMVEAVGREYMETYWAKIDWALnKETGVGVVQGITIPEARESVASR 416
                 ********************99882567999*******9998877655 PP

  == domain 4  score: 30.3 bits;  conditional E-value: 1.3e-10
                 HHHHTSTTS---BHHHHHH...HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHH CS
        CMAS 185 idkeiFPgGelpsieeiee...eiseagftvvdveslrahYakTLkaWaealqenkdeai 241
                  + ++FPgG lp+++ +++     s+  + v  ve++++hYa+TL++W+ +++++ +++i
  CDO69847.1 489 RAASVFPGGFLPTLTFLVDtlaRGSQGRLVVDAVENIGPHYARTLREWRRRFEARFEDVI 548
                 5678**********999883334567889999**********************999886 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHHHHHHHHTT CS
        CMAS 245 seevarmyelYLagcaeaFrkg 266
                  e + r + +Y  +c+  F+++
  CDO69847.1 571 IEVFRRKWIYYYCYCEVGFTTR 592
                 578999*************876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   4.3e-10   7.7e-07       1      90 [.     297     389 ..     297     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4.3e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeia 90 
                      vL++G G G l++ +   +++ +v  + +s ++ e ar+ra+++g+  +v+++ +d +++p   +g fD  vs+ +++ + +e +e++ ++i 
       CDO69847.1 297 VLEIGSGWGALAILITSTIPHTTVDTLTLSTQQAELARARAAAAGVadRVHVHLMDYRSMPReWEGAFDRLVSVEMVEAVGREYMETYWAKID 389
                      9*****************989****************************************62677*******98899999888888777765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.4e-07   0.00078      31      93 ..     293     357 ..     281     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.4e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTS CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleev 93 
                   ++vl +G+G+G+l++ + +  p+++v+ +  +++  e+a++ ++a +++  v+v+  d  +  
  CDO69847.1 293 PGHRVLEIGSGWGALAILITSTIPHTTVDTLTLSTQQAELARARAAAAGVAdrVHVHLMDYRSMP 357
                 6789*******************************************999988888888876654 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.1e-06     0.013       8     154 ..     281     437 ..     269     445 .. 0.82
   2 ?   -1.7   0.0       1.3   2.3e+03      96     125 ..     480     528 ..     461     546 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-06
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevl.rengf.svtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrev 91 
                      +l++ + ++    r+g rvL+iG G G l+ ++ ++ ++ +v+   ls ++ e+a+         ++  ++ + +++  +e +g fd  v+ e+
       CDO69847.1 281 KLRHIIRKAD--IRPGHRVLEIGSGWGALAILItSTIPHtTVDTLTLSTQQAELARaraaaagvADRVHVHLMDYRSMPREWEGAFDRLVSVEM 372
                      4444444332..68899****************7777887899********************99999999999999***************** PP

  Methyltransf_23  92 lehvp..dppellrqiatllkpg.Gylllseplaslkedrllldwlylvpagrhisffsarslkel 154
                       e v   +++ + ++i   l+ + G+ +++ ++ + ++++ +   l+ vp+ +h++  s+++l+++
       CDO69847.1 373 VEAVGreYMETYWAKIDWALNKEtGVGVVQGITIPEARESVASRLLMTVPD-EHRCQASSSTLAKW 437
                      ****96558888888888888776888888888875555566667777777.99998888888876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
  Methyltransf_23  96 pdppellrqiatllkpgGylllseplasl...................k 125
                      pd  ++l++ a+ + pgG l  +++l++                    +
       CDO69847.1 480 PDAVHTLTHRAASVFPGGFLPTLTFLVDTlargsqgrlvvdavenigpH 528
                      5677889999999999999988888887766666666666666666662 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     1e-05     0.019       1      93 [.     298     392 ..     298     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      LeiG+G G+l+  +   +p++++  + +s+++ e a+++ a+ +  +  +v+l +  +  ++ +++fD  v+ + ++++  + ++ ++++i  +
       CDO69847.1 298 LEIGSGWGALAILITSTIPHTTVDTLTLSTQQAELARARAAAAGVADRVHVHLMDYRSMPREWEGAFDRLVSVEMVEAVgrEYMETYWAKIDWA 391
                      8*******************************************999999999999988888889*************9998888888887765 PP

  Methyltransf_12  93 L 93 
                      L
       CDO69847.1 392 L 392
                      5 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.4e-06     0.015      31     100 ..     284     352 ..     279     365 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
       GCD14  31 liimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrD 100
                  ii k +++pG +v+e G G g+l+  i+ t+ P   + t+    q+ae ar      ++++ v+v+  D
  CDO69847.1 284 HIIRKADIRPGHRVLEIGSGWGALAILITSTI-PHTTVDTLTLSTQQAELARARAAAAGVADRVHVHLMD 352
                 588999******************99998887.9999****************************99877 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.7e-05      0.12      20      45 ..     283     308 ..     280     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.7e-05
                 HHHHHHH-GGTTSEEEEES-TTTCCH CS
      RrnaAD  20 neIldklnleekltvleigpGkGilT 45 
                   I++k+++++   vleig+G G+l 
  CDO69847.1 283 RHIIRKADIRPGHRVLEIGSGWGALA 308
                 57*********************986 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     7e-05      0.13      46     107 ..     293     353 ..     276     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-05
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakv.iltDleellellkknielnknalkskvkvevLdW 107
                       + +vlE+GsG G   + + +++p++ v +lt   +  el +   ++  + ++++v+v+ +d+
       CDO69847.1 293 PGHRVLEIGSGWGALAILITSTIPHTTVdTLTLSTQQAELARARAAA--AGVADRVHVHLMDY 353
                      5679*******************999997899999999999999999..45999999988876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.6e-05      0.15      50     126 ..     281     357 ..     251     366 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.6e-05
                     HHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HH.HHHHHHHHS.-----TTEEEEES-TTTS--- CS
  Methyltransf_2  50 vakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpe.VveaAkehl.sageeervefvgGdffkdslP 126
                       ++++++ d+++ ++++++G G Gala  i+s+ P+ +v  + l++  +e A+ +   ag ++rv+++  d++  s+P
      CDO69847.1 281 KLRHIIRKADIRPGHRVLEIGSGWGALAILITSTIPHTTVDTLTLSTqQAELARARAaAAGVADRVHVHLMDYR--SMP 357
                     56789999********************************9999975156778877768888999999887777..555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.17      70     130 ..     290     350 ..     271     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
                 T--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEE CS
        PCMT  70 elkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvv 130
                 ++++g rvLe+GsG G l+ +++  + +++ v ++  + + +e a+++  + +++ +v+v+ 
  CDO69847.1 290 DIRPGHRVLEIGSGWGALAILITSTIPHTT-VDTLTLSTQQAELARARAAAAGVAdRVHVHL 350
                 489****************99999887776.5555555555555665555555444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3965.12
//
Query:       CDO69848.1  [L=991]
Description: hypothetical protein BN946_scf184884.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0051   15.9   0.5     0.0087   15.1   0.5    1.4  1  Rif1_N    Rap1-interacting factor 1 N terminal
  ------ inclusion threshold ------
      0.092   12.0   0.2       0.94    8.7   0.1    2.3  2  Dcc1      Sister chromatid cohesion protein Dcc1


Domain annotation for each model (and alignments):
>> Rif1_N  Rap1-interacting factor 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   9.7e-07    0.0087      59     199 ..     127     267 ..      45     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.7e-07
                 ..HHHHHHHHHHHHHSSHHHHHHHTTHHHTHHHHHHTTTTTSTT--H..HHHHHHH..HHHHH--THHHHS-HHHHHHHHTTCCS--.----HHHHHHH CS
      Rif1_N  59 ssLviqAlkllgtllsnpaiastLsddfkvfiidhsirsledsstpK..niithll..svlsqQkFsskimtservkrllsalenieervkgksiiaer 153
                 + L+++Al+l+++++++ a+ + +s++    ++d  + + ++s++p   ++ t+ l  +vls+ + + +++ +   + ++++l++  e++ +      +
  CDO69848.1 127 AMLCHSALNLVSAIFRSAAMHRLFSHNVLQHLLDDVLVVAQSSELPTvdDVKTRSLasWVLSTLQLPEEVVRA-SRSPIMEILNDAAEDMGS---HLRA 221
                 569****************************************9997655666655559**************.5689************99...7899 PP

                 HHHHHHHHHHSHHHHHHTHHHHHHHHHHHHHHHHHTTT-HHHHHTT CS
      Rif1_N 154 lniyrrLleqapslmlahaelWlpdlfsgllssvkdirekaiqlgl 199
                   i++++++ +p ++l  + + lpd+++ l  +   +r  a     
  CDO69848.1 222 CDIIHNIISTYPRIFLMDSAQFLPDILKRLNATTATVRMDATVALA 267
                 ***********************************99999876443 PP

>> Dcc1  Sister chromatid cohesion protein Dcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0001      0.94     158     213 ..     144     200 ..     124     287 .. 0.83
   2 ?    0.2   0.0     0.041   3.7e+02     185     270 ..     462     552 ..     457     587 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0001
                 TTEEEEE-HHHHHHHHHHHHHHHHHTT--T.B-H..HHHHHHHHTTST--HHHHHHH CS
        Dcc1 158 dGrlrllspsylselLelvlallveesldl.davpeeelvealaedgevpeevieqv 213
                     rl+s+++l++lL+ vl ++++++l+  d v++ +l++ + ++ + peev+++ 
  CDO69848.1 144 AAMHRLFSHNVLQHLLDDVLVVAQSSELPTvDDVKTRSLASWVLSTLQLPEEVVRAS 200
                 55679*************************99**999999998888889**999875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.041
                 --TB-H..HHHHHHHHTTST--HHHHHHHHHHHEE......ES---..EEE-HHHHHHHHHHHHHHHHSS....S-EEHHHHHHHHHHTS-T CS
        Dcc1 185 ldldavpeeelvealaedgevpeevieqvlkvygkkesskekeeea..lkldekkvcralaeqlLkktka....ekieleeFlekWkssvPe 270
                 + +d ++e  ++ +++     + +v+e +l+  g++ +++e+  +   ++ ++  v + +a+++L+++++       + ++F  +W + ++e
  CDO69848.1 462 WAVDVLREMVTYPSVTVYR-DSLVVLERLLSGIGTSPEDSEALPQGsrWNPNHLVVKTLFARHVLRAAHQdfleALHAANQFEPAWVRPLGE 552
                 5555555556666664444.5678888888888887755555443377999999999*********98767887444455565555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6841.38
//
Query:       CDO69849.1  [L=238]
Description: hypothetical protein BN946_scf184884.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-17   63.5   0.2      2e-15   56.9   0.1    2.4  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    1.1e-10   41.8   0.3    4.8e-10   39.8   0.1    2.0  2  PEMT        Phospholipid methyltransferase
    3.7e-09   35.8   0.0    5.2e-09   35.4   0.0    1.2  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   3.4e-19     2e-15       5      66 ..     109     170 ..     106     181 .. 0.94
   2 ?    4.1   0.0      0.01        62      71      93 ..     193     215 ..     183     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.4e-19
        ICMT   5 vllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcna 66 
                 + ++  +r+ + ++lG+ +t  + i++dhkl+++g+y+++rHP+Y++++ l+++ +l+l+ +
  CDO69849.1 109 AAFGSTIRILCFRHLGRQFTYNLSIVDDHKLITNGPYAIVRHPSYTGWMSLAVGSVLMLVAP 170
                 67999*****************************************************9987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
        ICMT  71 lvllalvalllfvRikeEekaLa 93 
                 + + a+ +++lf R+k E++aL 
  CDO69849.1 193 AAFQAYIIAMLFPRMKREDEALK 215
                 456778899999********996 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1     8e-14   4.8e-10       3      72 ..     102     169 ..     100     180 .. 0.91
   2 ?   -0.9   0.0      0.36   2.1e+03      10      49 ..     193     232 ..     185     234 .. 0.64

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 8e-14
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgs 72 
                 +++G++l a+g ++++  +++lg++ t+   +   +++kl+t+G+Y ++++P y+g +   +G +L+   
  CDO69849.1 102 FAAGWALAAFGSTIRILCFRHLGRQFTYNLSI--VDDHKLITNGPYAIVRHPSYTGWMSLAVGSVLMLVA 169
                 578*************************9987..6789****************************9755 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.36
        PEMT  10 ialglllvlssiealgefgtfygdfFlelmdklvtsGiYr 49 
                  a+++++    + ++++    +   F+++  + +++ +Yr
  CDO69849.1 193 AAFQAYIIAMLFPRMKREDEALKAQFGDEWVEWTKRTPYR 232
                 4566666666666666666666777776666777777776 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   8.8e-13   5.2e-09     348     432 .]     136     238 .]     124     238 .] 0.86

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 8.8e-13
  ERG4_ERG24 348 GskLlvsGWyglarkinYlgDwlqslswsLatgfq...................svlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpyki 427
                  +kL+++G y+++r++ Y+g + +++   L+   +                   + l   +  y + +L  R +R++e  k+++G++w e+ k+ py++
  CDO69849.1 136 DHKLITNGPYAIVRHPSYTGWMSLAVGSVLMLV-ApgswlaesevlrsvggrvaISLYAAFQAYIIAMLFPRMKREDEALKAQFGDEWVEWTKRTPYRL 233
                 579*****************7666665555443.3477888***********87666667999************************************ PP

  ERG4_ERG24 428 ipyvy 432
                 ip++y
  CDO69849.1 234 IPGIY 238
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1680.23
//
Query:       CDO69850.1  [L=160]
Description: hypothetical protein BN946_scf184884.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-15   55.8   0.0      1e-14   54.7   0.0    1.5  2  ICMT            Isoprenylcysteine carboxyl methyltransferase 
    2.4e-12   47.2   0.0    3.6e-12   46.6   0.0    1.3  1  PEMT            Phospholipid methyltransferase
    1.1e-07   31.0   0.0    1.5e-07   30.6   0.0    1.2  1  ERG4_ERG24      Ergosterol biosynthesis ERG4/ERG24 family
     0.0011   18.5   0.3     0.0014   18.2   0.3    1.2  1  NnrU            NnrU protein
  ------ inclusion threshold ------
      0.018   14.6   0.2      0.022   14.3   0.2    1.3  1  DUF1295         Protein of unknown function (DUF1295)
       0.36   10.1   1.1        0.5    9.6   1.1    1.1  1  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.3   6.9e+03      43      48 ..      28      33 ..       6      43 .. 0.51
   2 !   54.7   0.0   3.5e-18     1e-14       4      92 ..      50     136 ..      47     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.3
        ICMT 43 ylrHPn 48
                ++ HP+
  CDO69850.1 28 TFNHPS 33
                356766 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 3.5e-18
        ICMT   4 lvllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllfvRikeEekaL 92 
                 lv+l+ ++r ++ + lG+ +t ++a+l++hklv++g+y+++rHP+Y++++i   + l++  +  + + +     +  l+ R+  E++aL
  CDO69850.1  50 LVILGALIRDACYRYLGRQFTFQLALLKGHKLVTDGPYAVVRHPSYTGWIIHTTGLLVI--QTCRGSWIAECGLLNTLVGRTWREDEAL 136
                 689**********************************************9997665554..4444566666666666777777777777 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.2e-15   3.6e-12       3     105 ..      44     143 ..      42     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.2e-15
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlaki 101
                 +++G++l++lg+l++ + ++ lg++ tf       + +klvt+G+Y ++++P y+g ++   Gl    +++ g ++a + ll++l+ +++ E++ l+++
  CDO69850.1  44 FMAGWVLVILGALIRDACYRYLGRQFTFQLAL--LKGHKLVTDGPYAVVRHPSYTGWIIHTTGLLV-IQTCRGSWIAECGLLNTLVGRTWREDEALREQ 139
                 578*************************8876..6789*************************955.5677889************************* PP

        PEMT 102 Ygkr 105
                 +g++
  CDO69850.1 140 FGEQ 143
                 *985 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     5e-11   1.5e-07     346     432 .]      76     160 .]      65     160 .] 0.87

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5e-11
  ERG4_ERG24 346 ktGskLlvsGWyglarkinYlgDwlqslswsLatgfqsvlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                  +G+kL+++G y+++r++ Y+g ++ +    L +      ++   +  l  Lv R+ R++e  ++++Ge+we++  +  y++ p+v+
  CDO69850.1  76 LKGHKLVTDGPYAVVRHPSYTGWIIHTTG--LLVIQTCRGSWIAECGLLNTLVGRTWREDEALREQFGEQWEQWSSRTAYRLLPGVF 160
                 58********************7776654..4444445568999****************************************998 PP

>> NnrU  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   4.6e-07    0.0014      91     174 ..      71     153 ..      23     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.6e-07
        NnrU  91 gnplsvglkadlaetgivritrHPmllgvaiWAlaHllanGdlasvllfgglllwalvgviaidrrkrrrlgeewealaartsv 174
                  + l++ + ++l + g ++++rHP  +g +i  ++ l+      s +   gll   +  ++  d+ +r+++ge+we++++rt++
  CDO69850.1  71 FQ-LALLKGHKLVTDGPYAVVRHPSYTGWIIHTTGLLVIQTCRGSWIAECGLLNTLVGRTWREDEALREQFGEQWEQWSSRTAY 153
                 33.444444588899*****************************************************************9986 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   7.5e-06     0.022     121     204 ..      44     126 ..      15     151 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
     DUF1295 121 dviglalwlvgivlealaDq...QlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltll 204
                  ++g++l+++g ++  +  +    +++f+  +    k++++G + + RHP Y g +++  gl++i +  ++++        ll+tl+
  CDO69850.1  44 FMAGWVLVILGALIRDACYRylgRQFTFQLALLKGHKLVTDGPYAVVRHPSYTGWIIHTTGLLVIQTCRGSWI----AECGLLNTLV 126
                 5566666666666655554422245778888886667*************************99988776654....3333555554 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1   0.00017       0.5      52      73 ..     131     152 ..     129     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00017
  ALIX_LYPXL_bnd  52 sedeklrakygtrWtrqpSsel 73 
                     +ede+lr+++g++W + +S+++
      CDO69850.1 131 REDEALREQFGEQWEQWSSRTA 152
                     69**************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1185.91
//
Query:       CDO69851.1  [L=870]
Description: hypothetical protein BN946_scf184884.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   14.4   0.1        0.1   12.9   0.1    1.7  1  CENP-X    CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.8e-06       0.1      17      53 ..     514     550 ..     495     575 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-06
                 -EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE CS
      CENP-X  17 tkItkdalelvaeylklFvrEavaRaaeeaeeegkee 53 
                  kI+ ++++l+  ++  Fv E + R++ ++e+e  ++
  CDO69851.1 514 SKISLETVRLLHAIVVQFVAEVMSRSIVSREQERIAK 550
                 79**************************999887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6222.13
//
Query:       CDO69852.1  [L=244]
Description: hypothetical protein BN946_scf184884.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-13   51.3   2.3    2.4e-13   50.3   0.0    2.5  3  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    1.4e-12   47.9   0.5    7.7e-12   45.5   0.5    2.1  1  PEMT        Phospholipid methyltransferase
    3.4e-05   22.8   0.0      5e-05   22.2   0.0    1.2  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
  ------ inclusion threshold ------
      0.025   14.1   0.4      0.036   13.6   0.4    1.4  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.64   2.9e+03      52      79 ..      66      93 ..      64      96 .. 0.81
   2 !   50.3   0.0   5.3e-17   2.4e-13       4      65 ..     114     175 ..     110     193 .. 0.92
   3 ?   -1.0   0.0      0.55   2.5e+03      63      92 ..     194     220 ..     185     222 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.64
        ICMT 52 fvilelatllLlcnakltalvllalval 79
                f++ e+at+l +  +  +a  +l++ a+
  CDO69852.1 66 FILFEVATILAMYAPSSLAQQVLPMLAW 93
                7889999999999998888888887777 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 5.3e-17
        ICMT   4 lvllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcn 65 
                 l+ ++ ++r+ + + lG+ +t  + +++dhklv++g+y+++rHP+Y++ +++ ++tll l+ 
  CDO69852.1 114 LCAIGGVVRILCYRALGRHFTFELSLRKDHKLVTDGPYSVVRHPSYTALIMVTVGTLLCLTG 175
                 5678999************************************************9987765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.55
        ICMT  63 lcnakltalvllalvalllfvRikeEekaL 92 
                 l+ a+   +v ++   ++++ R+ +E++ L
  CDO69852.1 194 LVIAWAAEVVWIP---IVMILRVGTEDEIL 220
                 3444444444444...44557888888776 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.5   1.7e-15   7.7e-12       3      71 ..     108     175 ..     106     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.7e-15
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLi.tg 71 
                 +++G++l+a+g ++++  ++alg++ tf      ++++klvt+G+Y+++++P y++ +++ +G+ L  tg
  CDO69852.1 108 FLVGAVLCAIGGVVRILCYRALGRHFTFELSL--RKDHKLVTDGPYSVVRHPSYTALIMVTVGTLLClTG 175
                 789*************************7776..9999**************************997444 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.1e-08     5e-05     347     431 ..     141     243 ..     131     244 .] 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-08
  ERG4_ERG24 347 tGskLlvsGWyglarkinYlgDwlqslswsLatgfq..................svlpyfy.vlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpyk 426
                 + +kL+++G y+++r++ Y++ +++++   L +                      v+++   v++  ++++ R   ++e  +k + ++we + k+ pyk
  CDO69852.1 141 KDHKLVTDGPYSVVRHPSYTALIMVTVGTLL-CLTGsgswlsesgilntligrlLVIAWAAeVVWIPIVMILRVGTEDEILRKEFKDEWEAWSKRTPYK 238
                 6689*****************8887766444.3333357889**********9999999872567779******************************* PP

  ERG4_ERG24 427 iipyv 431
                 +ip++
  CDO69852.1 239 LIPGL 243
                 ***86 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   8.1e-06     0.036     117     208 ..     104     198 ..      53     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.1e-06
     DUF1295 117 lkaldviglalwlvgivlealaDq...QlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltlllvfv 208
                 l+ + ++g++l+ +g v+ +l  +     ++f  +++   k++++G +++ RHP Y + +++ +g +l  + ++++l+   i+  l+  ll++ +
  CDO69852.1 104 LTSTFLVGAVLCAIGGVVRILCYRalgRHFTFELSLRKDHKLVTDGPYSVVRHPSYTALIMVTVGTLLCLTGSGSWLSESGILNTLIGRLLVIAW 198
                 45555566666666666665555411145677899999999***************************999999999888888877777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1956.05
//
Query:       CDO69853.1  [L=264]
Description: hypothetical protein BN946_scf184884.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-13   51.1   0.1      5e-12   46.1   0.1    2.5  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    5.7e-12   46.0   0.2    5.5e-10   39.6   0.2    2.3  2  PEMT        Phospholipid methyltransferase
    7.2e-05   21.7   0.0    0.00012   20.9   0.0    1.3  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
  ------ inclusion threshold ------
       0.42   10.7   0.2       0.42   10.7   0.2    3.4  4  DUF1656     Protein of unknown function (DUF1656)
        1.1    9.1   6.1        2.4    7.9   1.4    2.7  2  DUF3188     Protein of unknown function (DUF3188)


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1   1.4e-15     5e-12       4      61 ..     133     190 ..     130     196 .. 0.87
   2 ?    2.1   0.0     0.073   2.6e+02      73      92 ..     222     240 ..     213     242 .. 0.56

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.4e-15
        ICMT   4 lvllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatll 61 
                 l++++ +lr+v+ +t+G+ +t  +++++dh+l++sg+y+++rHP+Y + +++ l+ +l
  CDO69853.1 133 LAMAGGLLRIVCYRTMGRHFTFEITVRKDHRLITSGPYSIVRHPSYSALLLVVLGSVL 190
                 4578899****************************************97766666554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.073
        ICMT  73 llalvalllfvRikeEekaL 92 
                 l++  ++ lf R++ E++ L
  CDO69853.1 222 LYVP-VVALFFRVRVEDELL 240
                 3333.344555666666555 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.2   1.5e-13   5.5e-10       3      70 ..     127     192 ..     125     205 .. 0.92
   2 ?    4.1   0.0     0.016        58      78     104 ..     221     246 ..     207     247 .. 0.69

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.5e-13
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLit 70 
                 +++G+ll ++g ll++  ++++g++ tf  ++  +++++l+tsG+Y+++++P y + +l++lG +L +
  CDO69853.1 127 FAVGWLLAMAGGLLRIVCYRTMGRHFTFEITV--RKDHRLITSGPYSIVRHPSYSALLLVVLGSVLCF 192
                 789*************************8887..9999***************************973 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.016
        PEMT  78 lallvllvylialkfvEephlakiYgk 104
                 l+ +++++ ++ ++ vE++ l k +g 
  CDO69853.1 221 LLYVPVVALFFRVR-VEDELLHKAFGS 246
                 44455555555555.**********96 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.5e-08   0.00012     343     432 .]     156     264 .]     148     264 .] 0.79

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.5e-08
  ERG4_ERG24 343 iqtktGskLlvsGWyglarkinYlgDwlqslswsLatgfq......................svlpyfyvlyF.lvlLvhRelRDeekCkkkYGedwee 418
                 i+ ++ ++L++sG y+++r++ Y + +l+ l   L + +                               ly  +v L  R   ++e  +k +G++we 
  CDO69853.1 156 ITVRKDHRLITSGPYSIVRHPSYSALLLVVLGSVL-CFYGsgswlrecgildgalgkafgglW---LADLLYVpVVALFFRVRVEDELLHKAFGSEWEA 250
                 56677899*****************9999887555.444447788899999*****7664431...222345424567889888999999********* PP

  ERG4_ERG24 419 Ykkkvpykiipyvy 432
                 + +k py i+p++y
  CDO69853.1 251 WVRKTPYAIMPGIY 264
                 ************98 PP

>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00012      0.42      31      51 ..      45      65 ..      42      67 .. 0.86
   2 ?   -1.7   0.1      0.82   2.9e+03      14      35 ..     129     139 ..     124     148 .. 0.45
   3 ?   -0.8   0.1      0.45   1.6e+03      10      35 ..     179     204 ..     177     206 .. 0.76
   4 ?   -0.7   0.4      0.42   1.5e+03      18      41 ..     218     241 ..     212     244 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
     DUF1656 31 arlglyrlvWhpaLfdlAlfv 51
                a +++ r  Wh+ Lf++++  
  CDO69853.1 45 APVRVMRRPWHRKLFRVCVTT 65
                678999***********9865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.82
     DUF1656  14 vlallAllltlllrrllarlgl 35 
                 v  llA++            gl
  CDO69853.1 129 VGWLLAMA-----------GGL 139
                 33333333...........233 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.45
     DUF1656  10 PpllvlallAllltlllrrllarlgl 35 
                 ++ll+++l  +l +     +l+ +g+
  CDO69853.1 179 SALLLVVLGSVLCFYGSGSWLRECGI 204
                 67888888888888888888877775 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.42
     DUF1656  18 lAllltlllrrllarlglyrlvWh 41 
                 lA ll+++++ l+ r+++ + + h
  CDO69853.1 218 LADLLYVPVVALFFRVRVEDELLH 241
                 566778888888888877666666 PP

>> DUF3188  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.028     1e+02      20      44 ..     117     141 ..     104     143 .. 0.82
   2 ?    7.9   1.4   0.00066       2.4       1      17 [.     179     195 ..     179     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.028
     DUF3188  20 gsdrlqslPallvGlgLivsgavgr 44 
                 g+ r+   P + vG +L ++g+++r
  CDO69853.1 117 GASRIRITPTFAVGWLLAMAGGLLR 141
                 56779999*************9988 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00066
     DUF3188   1 aAplLillgllillysq 17 
                 +A+lL++lg ++ +y++
  CDO69853.1 179 SALLLVVLGSVLCFYGS 195
                 7*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1843.07
//
Query:       CDO69854.1  [L=362]
Description: hypothetical protein BN946_scf184884.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2836.50
//
Query:       CDO69855.1  [L=833]
Description: hypothetical protein BN946_scf184884.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-50  171.7   3.7    1.3e-50  171.7   3.7    2.5  2  PRP1_N    PRP1 splicing factor, N-terminal
    6.4e-28   95.1  37.2    0.00025   21.6   0.2   14.7 15  TPR_14    Tetratricopeptide repeat
    1.7e-15   57.2  17.9     0.0064   17.0   1.2    8.0  8  TPR_19    Tetratricopeptide repeat
    7.7e-14   52.1  18.3    2.7e-06   27.9   0.1    6.7  6  TPR_16    Tetratricopeptide repeat
    4.2e-08   33.3   6.6       0.15   12.7   0.0    8.2  7  TPR_6     Tetratricopeptide repeat
      1e-07   31.8   3.6        1.9    9.0   0.1    7.7  8  TPR_17    Tetratricopeptide repeat
    1.4e-06   28.3   8.5       0.09   12.9   0.1    6.0  5  TPR_9     Tetratricopeptide repeat
    3.5e-06   26.6   1.8      0.008   15.8   0.1    4.9  5  TPR_11    TPR repeat
    8.1e-06   25.6  18.7      0.019   15.1   0.3    8.9 10  TPR_2     Tetratricopeptide repeat
     0.0022   17.0  10.6     0.0032   16.5   0.1    4.4  5  NARP1     NMDA receptor-regulated protein 1
     0.0023   17.7  19.1     0.0041   16.8   3.1    5.2  6  TPR_21    Tetratricopeptide repeat-like domain
     0.0028   17.8  12.1      0.029   14.6   0.2    7.0  8  TPR_8     Tetratricopeptide repeat
      0.003   17.6   0.5        8.7    6.2   0.0    4.4  5  Suf       Suppressor of forked protein (Suf)
      0.005   15.6   0.8        2.3    6.8   0.0    2.9  3  DUF3808   Protein of unknown function (DUF3808)
  ------ inclusion threshold ------
      0.013   15.3   3.6        1.8    8.5   0.5    4.2  4  TPR_1     Tetratricopeptide repeat
       0.02   14.7   2.5       0.32   10.8   0.1    3.1  4  LemA      LemA family
        4.8    7.6  16.1        2.6    8.4   1.0    6.4  8  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PRP1_N  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   3.7   1.2e-53   1.3e-50       1     148 []      17     158 ..      17     158 .. 0.96
   2 ?    1.4   0.6      0.37   3.9e+02      98     138 ..     453     493 ..     435     501 .. 0.72

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 1.2e-53
                 ---S--HHHHHT------............................---------------------------------------HHHHHHHHHHHHHH CS
      PRP1_N   1 aPagYvaGlGRGAtGfttrsdigpareaeaseeekkkkkeeeeeeeedeedlqdeendefegeseglfakaeydedDeeAdriyeeiderlderrkkrr 99 
                 aPa YvaGlGRGA+Gfttrsdigpare  + e  +++++++ ee e d e++qd++n+       glfa+++y++dDeeAd+iye++d+++d rr++rr
  CDO69855.1  17 APASYVAGLGRGASGFTTRSDIGPAREGPSAEVIAEAQARRGEEPEIDPEQFQDPDNEY------GLFAGTTYEADDEEADKIYEQVDKNMDARRRARR 109
                 8**************************8877777888888999999999*****98888......********************************** PP

                 TT-------......-HHHHHHHHHHHHHTT--HHHHHS----B-SS-H CS
      PRP1_N 100 eakekeelekvreekpkiqeqFadlkrkLaevseeeWeniPevgdltrk 148
                 ea+e+eel k+r+e+pkiq+qFadlkr+La v++eeWe+iPevg+ltrk
  CDO69855.1 110 EARENEELAKYRAENPKIQQQFADLKRGLAVVTDEEWESIPEVGNLTRK 158
                 ***********************************************98 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.37
                 HHTT-------......-HHHHHHHHHHHHHTT--HHHHHS CS
      PRP1_N  98 rreakekeelekvreekpkiqeqFadlkrkLaevseeeWen 138
                   e+  ++++++  + +++i++  ++l+r+   +++e+W +
  CDO69855.1 453 ATEKPPEQREKELAAVDKTIEAGVRELRRHQVLLTREQWLK 493
                 334444445555778889*********************76 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.017        17      15      44 .]     261     290 ..     255     290 .. 0.93
   2 !   21.6   0.2   2.4e-07   0.00025       4      44 .]     284     324 ..     281     324 .. 0.96
   3 ?    2.1   0.1      0.43   4.5e+02      13      44 .]     323     354 ..     322     354 .. 0.92
   4 ?    2.4   0.0      0.36   3.8e+02      22      40 ..     363     381 ..     355     385 .. 0.88
   5 !    8.1   0.2    0.0051       5.4      19      44 .]     391     416 ..     389     416 .. 0.94
   6 !   13.3   0.2   0.00011      0.11      10      44 .]     412     446 ..     412     446 .. 0.95
   7 !    7.7   0.1    0.0069       7.2      22      43 ..     502     523 ..     484     524 .. 0.87
   8 !   12.9   0.8   0.00015      0.16       3      43 ..     517     557 ..     517     558 .. 0.94
   9 !    8.7   0.4    0.0034       3.6       3      39 ..     551     586 ..     549     590 .. 0.85
  10 !   13.6   0.0   8.9e-05     0.094       3      39 ..     584     620 ..     582     625 .. 0.87
  11 !   19.5   0.1   1.2e-06    0.0012       3      44 .]     618     659 ..     616     659 .. 0.91
  12 !    9.7   0.4    0.0016       1.7       2      40 ..     651     689 ..     650     691 .. 0.90
  13 !    9.5   0.0    0.0018       1.9       3      40 ..     686     723 ..     684     726 .. 0.92
  14 ?    3.3   0.4      0.18   1.9e+02       8      38 ..     738     769 ..     732     779 .. 0.72
  15 ?   -0.2   0.0       2.3   2.5e+03       3      34 ..     772     803 ..     770     808 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.017
      TPR_14  15 GdpdeAiallrralalaPddaeawlllaql 44 
                 Gd ++A+ l++ +++ +P++a  w++ a+l
  CDO69855.1 261 GDIKRARMLFDSLVKSNPKHAPGWIAAARL 290
                 999***********************9996 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2.4e-07
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 + a+a++++++G+  +A+++ ++ ++++P+++++wl+ a+l
  CDO69855.1 284 WIAAARLEEHAGRMVAARKMIKQGCEQCPKNEDVWLEAARL 324
                 889************************************97 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.43
      TPR_14  13 alGdpdeAiallrralalaPddaeawlllaql 44 
                 +l + d+A  +l  a+++  ++  +wl+ a+l
  CDO69855.1 323 RLHNNDDAKVILANAVQHVGQSVKIWLAAADL 354
                 78899**********************99975 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.36
      TPR_14  22 allrralalaPddaeawll 40 
                 ++lr+al++ P++ ++w +
  CDO69855.1 363 RVLRKALEHIPNSVRLWKE 381
                 79**************975 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0051
      TPR_14  19 eAiallrralalaPddaeawlllaql 44 
                 +A+ ll ra++  P++ e+wl+la+l
  CDO69855.1 391 DARILLSRAVEVIPQSVELWLALARL 416
                 68899*******************97 PP

  == domain 6  score: 13.3 bits;  conditional E-value: 0.00011
      TPR_14  10 allalGdpdeAiallrralalaPddaeawlllaql 44 
                 al++l+ pd+A a+l++a ++ P++ e+w++ ++l
  CDO69855.1 412 ALARLETPDKAKAVLNKARKAVPTSHEIWIAAGRL 446
                 6899**************************99986 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0069
      TPR_14  22 allrralalaPddaeawlllaq 43 
                 a+l+ra+ ++P+ +++wl++a+
  CDO69855.1 502 AILERAVHHCPQAEVLWLMWAK 523
                 57999999************96 PP

  == domain 8  score: 12.9 bits;  conditional E-value: 0.00015
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++l+ a+  + +Gd  +A+++l+ra  ++ +++++wl+ ++
  CDO69855.1 517 LWLMWAKEKWLAGDVPAAREVLERAFVANSESEQIWLAAVK 557
                 69**********************************99876 PP

  == domain 9  score: 8.7 bits;  conditional E-value: 0.0034
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawl 39 
                  +la++++++++G++d A++ll ra ++  d +++w+
  CDO69855.1 551 IWLAAVKLEAENGELDVARELLVRA-RTVADTERIWM 586
                 69**********************9.66777778876 PP

  == domain 10  score: 13.6 bits;  conditional E-value: 8.9e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawl 39 
                  +++ a +++++G++ +A++ l  a++++P++a +++
  CDO69855.1 584 IWMKSAVFERQQGQLSTALETLATAIKKYPKFAKLYM 620
                 5778888999*********************999886 PP

  == domain 11  score: 19.5 bits;  conditional E-value: 1.2e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 +++  ++++ ++G++++A+a + + ++++P+d  +w+l  +l
  CDO69855.1 618 LYMIQGQIHQQQGNLAAARASYAAGIKACPKDVNLWILASRL 659
                 677789******************************998775 PP

  == domain 12  score: 9.7 bits;  conditional E-value: 0.0016
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawll 40 
                 +++ ++ ++++a G+  +A+all++a  ++P+++++w +
  CDO69855.1 651 NLWILASRLEEADGKSIKARALLDKARLAHPGSDVLWAE 689
                 67888899999***************999*******976 PP

  == domain 13  score: 9.5 bits;  conditional E-value: 0.0018
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawll 40 
                 ++++++ +++++G  ++A ++l r l+ +P++  +w +
  CDO69855.1 686 LWAEAVGVEERSGGAAQAKTVLARGLQECPTSGLLWSM 723
                 699999*************************9999955 PP

  == domain 14  score: 3.3 bits;  conditional E-value: 0.18
      TPR_14   8 aeallal.GdpdeAiallrralalaPddaeaw 38 
                 a+al+ + ++ ++A+  ++ra+a+  ++ ++w
  CDO69855.1 738 ADALRKAeRKIEKARHWFERAVAASENPSDTW 769
                 667765415799*********99765555444 PP

  == domain 15  score: -0.2 bits;  conditional E-value: 2.3
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                  ++  ++++++ G p++ +++ ++a+ + P  
  CDO69855.1 772 IWAWWLKFERQHGTPEQQEEVIKKAINAEPRY 803
                 5888899999***************9999876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00014      0.15       5      62 ..     261     318 ..     258     324 .. 0.90
   2 ?    1.5   0.0      0.41   4.4e+02       8      34 ..     328     354 ..     323     356 .. 0.87
   3 !    9.6   0.1    0.0012       1.2       9      57 ..     391     435 ..     386     447 .. 0.83
   4 !   14.5   0.2   3.5e-05     0.037       4      51 ..     528     575 ..     525     589 .. 0.90
   5 !    8.6   0.1    0.0025       2.6      32      67 ..     589     624 ..     575     625 .. 0.69
   6 !   17.0   1.2   6.1e-06    0.0064       3      58 ..     594     649 ..     592     659 .. 0.90
   7 !   13.4   1.4   8.1e-05     0.086       3      58 ..     628     683 ..     626     691 .. 0.93
   8 ?    6.0   0.1     0.016        17       5      54 ..     664     713 ..     661     723 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 gd  +A  l+ ++ + +pk+a  +++ A++   +g+  +A++++++  e+ p++++++
  CDO69855.1 261 GDIKRARMLFDSLVKSNPKHAPGWIAAARLEEHAGRMVAARKMIKQGCEQCPKNEDVW 318
                 8999****************************************99877777766665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.41
      TPR_19   8 aeAlalleqalqedpknaearllLAea 34 
                 ++A  +l++a q+  ++  ++l+ A++
  CDO69855.1 328 DDAKVILANAVQHVGQSVKIWLAAADL 354
                 799999999999999999999998886 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0012
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +A  ll++a +  p++ e++l    al  l  +d+A+a+L+++ ++ p 
  CDO69855.1 391 DARILLSRAVEVIPQSVELWL----ALARLETPDKAKAVLNKARKAVPT 435
                 67779****************....666678899999999999988776 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 3.5e-05
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 +gd  +A + le+a+ ++ +++ ++l+ +++  ++g+ld A++lL ++
  CDO69855.1 528 AGDVPAAREVLERAFVANSESEQIWLAAVKLEAENGELDVARELLVRA 575
                 79******************************************9776 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.0025
      TPR_19  32 AeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 A    ++gql  A ++L+++ +++p+ a + + +++
  CDO69855.1 589 AVFERQQGQLSTALETLATAIKKYPKFAKLYMIQGQ 624
                 555567777777777777777777776666666665 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 6.1e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++g++  Al+ l+ a++++pk a + +   +++ ++g+l++A+a  +a  ++ p+d
  CDO69855.1 594 QQGQLSTALETLATAIKKYPKFAKLYMIQGQIHQQQGNLAAARASYAAGIKACPKD 649
                 8**************************99***************999887776665 PP

  == domain 7  score: 13.4 bits;  conditional E-value: 8.1e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++g++a+A a +++ +++ pk+ ++++l  ++  a g   +A+alLd++ ++ p +
  CDO69855.1 628 QQGNLAAARASYAAGIKACPKDVNLWILASRLEEADGKSIKARALLDKARLAHPGS 683
                 79**************************************************9983 PP

  == domain 8  score: 6.0 bits;  conditional E-value: 0.016
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 g+   A all +a  + p+++ +++  + +   +g  ++A+ +L++ ++e
  CDO69855.1 664 GKSIKARALLDKARLAHPGSDVLWAEAVGVEERSGGAAQAKTVLARGLQE 713
                 5666799*************************************998766 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00081      0.85      11      55 ..     261     302 ..     257     315 .. 0.88
   2 ?    1.4   0.0       0.5   5.3e+02      38      63 ..     409     432 ..     391     437 .. 0.65
   3 ?    3.3   0.1      0.12   1.3e+02       6      46 ..     412     449 ..     407     467 .. 0.81
   4 !   16.0   1.0   1.4e-05     0.015       1      61 [.     519     576 ..     519     582 .. 0.89
   5 !   27.9   0.1   2.6e-09   2.7e-06       8      67 ..     593     649 ..     592     650 .. 0.95
   6 ?    1.6   0.2      0.43   4.6e+02       9      47 ..     743     764 ..     735     769 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00081
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaa 55 
                 gd  +A+ +++ ++k++   P +a  + + +++  ++gr+ +A+ 
  CDO69855.1 261 GDIKRARMLFDSLVKSN---PKHAPGWIAAARLEEHAGRMVAARK 302
                 88999************...***********************86 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.5
      TPR_16  38 lllgdaalrqgrlaeAaalyraalra 63 
                 l+l++a+l+ ++ a+A+  +++a +a
  CDO69855.1 409 LWLALARLETPDKAKAV--LNKARKA 432
                 56666667777777776..4444333 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.12
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 a++r+  +d+A a+l+ a+k+    P  +e + + g+++ +
  CDO69855.1 412 ALARLETPDKAKAVLNKARKAV---PTSHEIWIAAGRLLEQ 449
                 5666666888999999999999...8888888888887765 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 1.4e-05
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 l++a++ + agd ++A+++le+a  ++   ++  + +l+   + +++g+l+ A++l+ +a 
  CDO69855.1 519 LMWAKEKWLAGDVPAAREVLERAFVAN---SESEQIWLAAVKLEAENGELDVARELLVRAR 576
                 678888999******************...88888*******************7776664 PP

  == domain 5  score: 27.9 bits;  conditional E-value: 2.6e-09
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +++g+   A++ l +a+k++   P  a  ++  g+++ +qg+la+A+a y+a ++a p++
  CDO69855.1 593 RQQGQLSTALETLATAIKKY---PKFAKLYMIQGQIHQQQGNLAAARASYAAGIKACPKD 649
                 589*****************...*****************************99999976 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.43
      TPR_16   9 ragd.yddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                 +a +  +                   a+ ++++++aa ++
  CDO69855.1 743 KAERkIE------------------KARHWFERAVAASEN 764
                 2322233..................455556666555544 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.82   8.6e+02      12      26 ..      84      97 ..      79     100 .. 0.81
   2 ?    4.9   0.0     0.047        49      14      32 ..     261     279 ..     255     280 .. 0.89
   3 ?    2.9   0.0      0.19     2e+02       4      33 .]     409     436 ..     407     436 .. 0.71
   4 ?    0.6   0.0       1.1   1.2e+03       4      25 ..     517     540 ..     516     542 .. 0.83
   5 !   12.7   0.0   0.00015      0.15       8      32 ..     590     614 ..     585     614 .. 0.85
   6 ?    2.4   0.2      0.29   3.1e+02       4      24 ..     620     640 ..     618     647 .. 0.89
   7 ?    1.6   0.0      0.53   5.5e+02       6      33 .]     655     683 ..     651     683 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.82
                HHHHHHHHHHHHHHH CS
       TPR_6 12 klgdtdkAlealerl 26
                ++ d ++A +++e++
  CDO69855.1 84 EA-DDEEADKIYEQV 97
                47.999*******98 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHHHHH-TT CS
       TPR_6  14 gdtdkAlealerlikeYPd 32 
                 gd  +A+ ++++l+k+ P+
  CDO69855.1 261 GDIKRARMLFDSLVKSNPK 279
                 7999**************8 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPdS 33 
                 ++lal+++++  +dkA++ l++ +k  P+S
  CDO69855.1 409 LWLALARLET--PDKAKAVLNKARKAVPTS 436
                 6888888866..667788777777776665 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 1.1
                 HHHHHHHHH.H.HHHHHHHHHHHH CS
       TPR_6   4 yklalsyrk.l.gdtdkAlealer 25 
                 ++l ++ +k l gd  +A+e ler
  CDO69855.1 517 LWLMWAKEKwLaGDVPAAREVLER 540
                 5778888877769*********98 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   8 lsyrklgdtdkAlealerlikeYPd 32 
                    r++g+ ++Ale+l   ik+YP+
  CDO69855.1 590 VFERQQGQLSTALETLATAIKKYPK 614
                 5556699*****************6 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAleale 24 
                 + +++ ++++g+ ++A++ + 
  CDO69855.1 620 MIQGQIHQQQGNLAAARASYA 640
                 56899************9985 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.53
                 HH.HHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   6 la.lsyrklgdtdkAlealerlikeYPdS 33 
                 la ++ ++ g++ kA+++l++ +  +P+S
  CDO69855.1 655 LAsRLEEADGKSIKARALLDKARLAHPGS 683
                 5534444457999*********9999987 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.16   1.7e+02       5      33 ..     273     301 ..     269     302 .. 0.84
   2 ?    3.1   0.0      0.14   1.5e+02       4      24 ..     306     326 ..     303     343 .. 0.87
   3 ?   -0.2   0.0       1.6   1.7e+03       3      16 ..     366     379 ..     364     381 .. 0.89
   4 ?    2.4   0.0      0.24   2.6e+02       4      23 ..     398     417 ..     395     433 .. 0.82
   5 ?   -2.6   0.0       9.3   9.9e+03      20      34 .]     589     603 ..     585     603 .. 0.83
   6 !    9.0   0.1    0.0018       1.9       4      33 ..     607     636 ..     604     637 .. 0.94
   7 ?    6.1   0.0     0.016        17       2      33 ..     639     670 ..     638     671 .. 0.91
   8 ?   -2.7   0.0       9.8     1e+04       3      16 ..     794     807 ..     793     808 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.16
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                  ++ +P++a+ +   A+l +++G+   Ar
  CDO69855.1 273 LVKSNPKHAPGWIAAARLEEHAGRMVAAR 301
                 5788*****************99877776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
      TPR_17   4 kaleldPnnadaynnLAelll 24 
                 +  e++P+n d++ + A+l+ 
  CDO69855.1 306 QGCEQCPKNEDVWLEAARLHN 326
                 6679**********9999875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.6
      TPR_17   3 lkaleldPnnaday 16 
                 +kale+ Pn++ ++
  CDO69855.1 366 RKALEHIPNSVRLW 379
                 79********9888 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.24
      TPR_17   4 kaleldPnnadaynnLAell 23 
                 +a+e  P +++++  LA+l 
  CDO69855.1 398 RAVEVIPQSVELWLALARLE 417
                 788888***********986 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 9.3
      TPR_17  20 AelllknGdlmtArq 34 
                 A++ +++G+l tA++
  CDO69855.1 589 AVFERQQGQLSTALE 603
                 7788899***99975 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0018
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                  a++++P+ a++y   ++++ ++G+l+ Ar
  CDO69855.1 607 TAIKKYPKFAKLYMIQGQIHQQQGNLAAAR 636
                 69*************************998 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.016
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y   ++ +P++++++ +  +l +  G++ +Ar
  CDO69855.1 639 YAAGIKACPKDVNLWILASRLEEADGKSIKAR 670
                 66789**********************99998 PP

  == domain 8  score: -2.7 bits;  conditional E-value: 9.8
      TPR_17   3 lkaleldPnnaday 16 
                 +ka+  +P + + +
  CDO69855.1 794 KKAINAEPRYGPTW 807
                 79******999888 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00023      0.24      12      66 ..     264     318 ..     259     325 .. 0.87
   2 ?   -1.0   0.1       1.9     2e+03      20      39 ..     398     417 ..     388     449 .. 0.70
   3 ?    0.2   0.0      0.78   8.3e+02      52      63 ..     504     515 ..     496     520 .. 0.89
   4 ?    5.6   0.0     0.017        18      32      68 ..     585     621 ..     578     624 .. 0.82
   5 !   12.9   0.1   8.5e-05      0.09       7      72 ..     594     659 ..     593     660 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
       TPR_9  12 eralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                  ra    ++l+  +P+++  +   ++l+++ G++ aA++   +  +++p+++d+ 
  CDO69855.1 264 KRARMLFDSLVKSNPKHAPGWIAAARLEEHAGRMVAARKMIKQGCEQCPKNEDVW 318
                 6677778999999************************************999875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.9
       TPR_9  20 rllllaPddpeerrdRGlll 39 
                 r + + P+++e+++  ++l+
  CDO69855.1 398 RAVEVIPQSVELWLALARLE 417
                 55566777777777666654 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.78
       TPR_9  52 Leaylalapdap 63 
                 Le++++++p+a+
  CDO69855.1 504 LERAVHHCPQAE 515
                 99*******997 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.017
       TPR_9  32 rrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 ++  ++ + q+G+ls+Al+ L +++ + p+ +  ++i
  CDO69855.1 585 WMKSAVFERQQGQLSTALETLATAIKKYPKFAKLYMI 621
                 566677788******************9987777766 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 8.5e-05
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 ++ + + al+++   +   P+ + +++  G++++q+G+l+aA+a   a +  +p++     ++++L
  CDO69855.1 594 QQGQLSTALETLATAIKKYPKFAKLYMIQGQIHQQQGNLAAARASYAAGIKACPKDVNLWILASRL 659
                 56677888888888888889999999999*************************998888777777 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.89   9.3e+02      18      33 ..     305     320 ..     304     325 .. 0.86
   2 ?   -0.8   0.0       1.2   1.2e+03      17      35 ..     396     414 ..     392     416 .. 0.90
   3 ?   -2.6   0.0       4.3   4.6e+03       8      31 ..     529     552 ..     528     554 .. 0.77
   4 !   15.8   0.1   7.6e-06     0.008       5      42 .]     593     630 ..     592     630 .. 0.97
   5 !    9.5   0.2   0.00071      0.75       1      31 [.     623     653 ..     623     655 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.89
      TPR_11  18 kkAlkldPdnaeayyn 33 
                 k+ ++ +P+n +++++
  CDO69855.1 305 KQGCEQCPKNEDVWLE 320
                 6899********9976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
      TPR_11  17 YkkAlkldPdnaeayynLG 35 
                 +++A++  P+++e++++L+
  CDO69855.1 396 LSRAVEVIPQSVELWLALA 414
                 579************9997 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.3
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeay 31 
                 G+ ++A e++++A   ++++  ++
  CDO69855.1 529 GDVPAAREVLERAFVANSESEQIW 552
                 88999*******977666666665 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 7.6e-06
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ++qG++  A+e + +A+k  P++a +y   G+++++qG
  CDO69855.1 593 RQQGQLSTALETLATAIKKYPKFAKLYMIQGQIHQQQG 630
                 89**********************************99 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00071
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeay 31 
                 G++  +qG++ +A ++Y + +k +P++++++
  CDO69855.1 623 GQIHQQQGNLAAARASYAAGIKACPKDVNLW 653
                 77888**********************9976 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.5   5.3e+02       3      34 .]     283     314 ..     281     314 .. 0.92
   2 ?   -1.3   0.0       3.2   3.4e+03      23      33 ..     364     374 ..     362     375 .. 0.83
   3 ?    0.7   0.0      0.72   7.5e+02      12      33 ..     414     435 ..     411     436 .. 0.79
   4 ?   -0.2   0.0       1.3   1.4e+03      10      28 ..     524     542 ..     517     547 .. 0.77
   5 ?   -2.2   0.0       6.1   6.4e+03      13      27 ..     561     575 ..     558     578 .. 0.86
   6 ?    4.8   0.0     0.035        37       8      33 ..     589     614 ..     583     615 .. 0.84
   7 !   15.1   0.3   1.8e-05     0.019       1      34 []     616     649 ..     616     649 .. 0.94
   8 ?   -1.6   0.1       3.8     4e+03       7      28 ..     656     677 ..     651     682 .. 0.72
   9 !    6.9   0.2    0.0074       7.8       8      32 ..     738     763 ..     735     765 .. 0.79
  10 ?   -1.4   0.1       3.4   3.5e+03      15      30 ..     812     827 ..     811     830 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.5
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ + +++ +++g+   A++  ++  e +P+n
  CDO69855.1 283 GWIAAARLEEHAGRMVAARKMIKQGCEQCPKN 314
                 79999999*********************997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.2
       TPR_2  23 afekAleldPn 33 
                  ++kAle+ Pn
  CDO69855.1 364 VLRKALEHIPN 374
                 689****9998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.72
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 ++l  +++A++ ++kA +  P+
  CDO69855.1 414 ARLETPDKAKAVLNKARKAVPT 435
                 5556679*********998886 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.3
       TPR_2  10 ayyklgdyeeAleafekAl 28 
                   + +gd   A+e +e+A 
  CDO69855.1 524 EKWLAGDVPAAREVLERAF 542
                 55678999*********95 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 6.1
       TPR_2  13 klgdyeeAleafekA 27 
                 ++g+++ A+e++ +A
  CDO69855.1 561 ENGELDVARELLVRA 575
                 6899******99888 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.035
       TPR_2   8 GlayyklgdyeeAleafekAleldPn 33 
                 +   +++g++  Ale +  A++ +P+
  CDO69855.1 589 AVFERQQGQLSTALETLATAIKKYPK 614
                 666689*******************7 PP

  == domain 7  score: 15.1 bits;  conditional E-value: 1.8e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a++++ +G+++ ++g+++ A++ + + ++ +P++
  CDO69855.1 616 AKLYMIQGQIHQQQGNLAAARASYAAGIKACPKD 649
                 678999*************************986 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 3.8
       TPR_2   7 lGlayyklgdyeeAleafekAl 28 
                   ++ ++ g+  +A+++++kA 
  CDO69855.1 656 ASRLEEADGKSIKARALLDKAR 677
                 5556667788889999999996 PP

  == domain 9  score: 6.9 bits;  conditional E-value: 0.0074
       TPR_2   8 Glayyklgdy.eeAleafekAleldP 32 
                 ++a++k+ +  e+A+++fe+A++  +
  CDO69855.1 738 ADALRKAERKiEKARHWFERAVAASE 763
                 56777777777**********98765 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 3.4
       TPR_2  15 gdyeeAleafekAlel 30 
                 +d++ A++  ++ lel
  CDO69855.1 812 KDLANARKSTREILEL 827
                 78999********998 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.1      0.83   8.7e+02     404     437 ..      84     120 ..      66     146 .. 0.50
   2 ?    3.6   0.0     0.024        25     204     252 ..     259     307 ..     249     315 .. 0.92
   3 ?   -1.2   0.0       0.7   7.3e+02     204     237 ..     415     448 ..     386     455 .. 0.73
   4 ?   -1.9   0.0       1.1   1.2e+03     213     252 ..     502     541 ..     491     574 .. 0.79
   5 !   16.5   0.1     3e-06    0.0032     202     247 ..     592     637 ..     584     649 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.83
                 -S-HHHHHHHHHHHHHH...HHHHHHHHHHHHHHH-- CS
       NARP1 404 elseaerkklrkkakka...ekkaekeeaekaekeke 437
                 e +++e  k+ ++  k+   +++a++e+ e++e  k 
  CDO69855.1  84 EADDEEADKIYEQVDKNmdaRRRARREARENEELAKY 120
                 4455555555554444321022222222222221111 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.024
                 HHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       NARP1 204 klgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeea 252
                 ++g+ ++A  + d+ ++++p+    +++ ar+ +haG + +A ++++++
  CDO69855.1 259 EIGDIKRARMLFDSLVKSNPKHAPGWIAAARLEEHAGRMVAARKMIKQG 307
                 5788899999********************************9998875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.7
                 HHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHH CS
       NARP1 204 klgsrekAleyidkaiehtptlvelyltKarilk 237
                 +l+  +kA  +++ka +  pt+ e++++ +r+l+
  CDO69855.1 415 RLETPDKAKAVLNKARKAVPTSHEIWIAAGRLLE 448
                 4556677777778888888888887777777665 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.1
                 HHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       NARP1 213 eyidkaiehtptlvelyltKarilkhaGdlkkAaevmeea 252
                  ++++a++h p++  l+l+ a+    aGd+ +A ev+e+a
  CDO69855.1 502 AILERAVHHCPQAEVLWLMWAKEKWLAGDVPAAREVLERA 541
                 457999*****999999999999999**********9998 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 3e-06
                 HHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHH CS
       NARP1 202 ydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAae 247
                   + g+ + Ale++ +ai++ p++  ly++ ++i++++G+l +A +
  CDO69855.1 592 ERQQGQLSTALETLATAIKKYPKFAKLYMIQGQIHQQQGNLAAARA 637
                 55678899*********************************99865 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.21   2.2e+02      34      65 ..      85     117 ..      80     147 .. 0.67
   2 ?   -1.5   0.1       1.6   1.7e+03     163     180 ..     177     194 ..     176     229 .. 0.68
   3 ?    1.7   0.0      0.18   1.9e+02      53     120 ..     224     291 ..     197     321 .. 0.76
   4 !    8.5   0.4    0.0014       1.5      64     136 ..     503     572 ..     480     582 .. 0.77
   5 !   16.8   3.1   3.9e-06    0.0041      79     179 ..     552     649 ..     548     662 .. 0.82
   6 ?   -2.5   0.1       3.3   3.4e+03     158     178 ..     744     764 ..     739     768 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.21
      TPR_21  34 eqaeeAsalYqqlqeaveakdaakak.eaaeel 65 
                 +  eeA ++Y+q++++++a  +a+ + ++ eel
  CDO69855.1  85 ADDEEADKIYEQVDKNMDARRRARREaRENEEL 117
                 56799**********998666553320222333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
      TPR_21 163 deAraaYqaAlaaleeka 180
                 d Ar++Y+ +l++ ++ +
  CDO69855.1 177 DRARTEYETSLDTRQQAT 194
                 578888888888877765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.18
      TPR_21  53 kdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLa 120
                  d+a+ ++  + l+ + + ++Y      ++ k+ +e gd+++A+  ++++++++++++   +a  RL 
  CDO69855.1 224 LDQASGTATSTGLQTAIDPKGYLTSLDSVVIKTDAEIGDIKRARMLFDSLVKSNPKHAPGWIAAARLE 291
                 55666667777777777788888877778889999999999999999999999999999999999984 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0014
      TPR_21  64 eladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktL 136
                  l+ + +  + a++  L+ Ak++  agd+ aA++ Le++   +++ e   la ++L    ++++++d A ++L
  CDO69855.1 503 ILERAVHHCPQAEVLWLMWAKEKWLAGDVPAAREVLERAFVANSESEQIWLAAVKL---EAENGELDVARELL 572
                 455666677789999**********************9999988888778888766...45666666666665 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 3.9e-06
      TPR_21  79 aLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkee..afaalvaelrGDilvaqgkldeAraaYqaAlaa 175
                  L++ k ++e+g+l+ A++ L ++   a+ e     + ++ a    +++++  Al+tL+++ ++  +fa l+  ++G i+ +qg+l+ Ara Y a+++a
  CDO69855.1 552 WLAAVKLEAENGELDVARELLVRARTVADTE----RIWMKSAVFERQQGQLSTALETLATAIKKypKFAKLY-MIQGQIHQQQGNLAAARASYAAGIKA 645
                 68888999999*******9999888888666....4678999999*************87654422777776.59*********************999 PP

      TPR_21 176 leek 179
                   ++
  CDO69855.1 646 CPKD 649
                 8776 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 3.3
      TPR_21 158 aqgkldeAraaYqaAlaalee 178
                 a+ k+++Ar+ +++A+aa e+
  CDO69855.1 744 AERKIEKARHWFERAVAASEN 764
                 566889999999999998775 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       2.7   2.8e+03      16      27 ..      86      97 ..      84      99 .. 0.85
   2 ?   -1.5   0.0       3.9   4.1e+03      14      34 .]     260     280 ..     258     280 .. 0.90
   3 ?   -1.8   0.0       4.7     5e+03       2      34 .]     282     314 ..     281     314 .. 0.84
   4 ?   -0.1   0.0       1.4   1.5e+03      12      27 ..     414     429 ..     411     431 .. 0.83
   5 ?   -0.5   0.0       1.9     2e+03       2      29 ..     583     610 ..     582     614 .. 0.87
   6 !   14.6   0.2   2.7e-05     0.029       1      34 []     616     649 ..     616     649 .. 0.94
   7 ?    2.3   0.0      0.24   2.5e+02      14      33 ..     745     764 ..     736     765 .. 0.82
   8 ?   -0.4   0.0       1.7   1.8e+03      17      33 ..     786     802 ..     782     803 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.7
                -HHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyeka 27
                d eeA + ye++
  CDO69855.1 86 DDEEADKIYEQV 97
                679*******97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.9
                 TT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  14 lgdyeeAkeyyekaleldpdn 34 
                  gd++ A   +   ++ +p++
  CDO69855.1 260 IGDIKRARMLFDSLVKSNPKH 280
                 699*************99986 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.7
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + +   +++ +  g++ +A + +++ +e  p+n
  CDO69855.1 282 PGWIAAARLEEHAGRMVAARKMIKQGCEQCPKN 314
                 678888999999999999***999999988875 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.4
                 HHTT-HHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyeka 27 
                   l+  ++Ak++++ka
  CDO69855.1 414 ARLETPDKAKAVLNKA 429
                 5677789********8 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.9
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +++++ +   +++g++  A e++  a++
  CDO69855.1 583 RIWMKSAVFERQQGQLSTALETLATAIK 610
                 67888888899***********999997 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 2.7e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a++y+  g+i++++g++ +A ++y   +++ p++
  CDO69855.1 616 AKLYMIQGQIHQQQGNLAAARASYAAGIKACPKD 649
                 6899*************************99986 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.24
                 TT-HHHHHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekaleldpd 33 
                   ++e+A  ++e+a+ ++++
  CDO69855.1 745 ERKIEKARHWFERAVAASEN 764
                 6789**********988775 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleldpd 33 
                  e+ +e+++ka+ ++p 
  CDO69855.1 786 PEQQEEVIKKAINAEPR 802
                 58889*******99985 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.3   4.5e+03      84     119 ..     261     293 ..     259     346 .. 0.61
   2 ?   -2.3   0.0       3.4   3.6e+03      23      59 ..     333     369 ..     321     371 .. 0.76
   3 ?    3.1   0.0     0.072        76      10      43 ..     412     445 ..     407     459 .. 0.85
   4 ?    2.2   0.1      0.14   1.4e+02      90     136 ..     535     578 ..     495     614 .. 0.62
   5 !    6.2   0.0    0.0082       8.7      87     125 ..     749     788 ..     744     802 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.3
         Suf  84 nddnnaRvlfekvvsklskekeakelykkfleyest 119
                  d ++aR lf+++v++  k+    + +   ++ e +
  CDO69855.1 261 GDIKRARMLFDSLVKSNPKHA---PGWIAAARLEEH 293
                 577778888887777655444...344444444444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
         Suf  23 vFkkARkkprltyevyvasAllEyyiskdkkvAtkIF 59 
                 + ++A ++   + +++ a+A lE+ ++ +k+v +k +
  CDO69855.1 333 ILANAVQHVGQSVKIWLAAADLEHDVKAKKRVLRKAL 369
                 55566666677788999*******9999998877765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.072
         Suf  10 asrRaeGikgaRkvFkkARkkprltyevyvasAl 43 
                 a+ R e   +a +v +kARk   +++e+++a++ 
  CDO69855.1 412 ALARLETPDKAKAVLNKARKAVPTSHEIWIAAGR 445
                 66788888999********************984 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.14
         Suf  90 RvlfekvvsklskekeakelykkfleyestfgdlssilklekRmeel 136
                 R ++e++  + s+   +++++   ++ e++ g+l++  +l  R +++
  CDO69855.1 535 REVLERAFVANSE---SEQIWLAAVKLEAENGELDVARELLVRARTV 578
                 4445544433333...4455555555555555555555544444333 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0082
         Suf  87 nnaRvlfekvvsklskeke.akelykkfleyestfgdlss 125
                 ++aR  fe++v++  +  +   ++++ +l++e ++g  ++
  CDO69855.1 749 EKARHWFERAVAASENPSDtWGDIWAWWLKFERQHGTPEQ 788
                 7899*******98554444389*************97655 PP

>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   1.7e+03     245     296 ..     257     308 ..     245     317 .. 0.80
   2 !    5.9   0.1    0.0043       4.5     246     306 ..     490     551 ..     473     556 .. 0.89
   3 !    6.8   0.0    0.0022       2.3     245     296 ..     592     643 ..     573     653 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
     DUF3808 245 dglkapleeleelLlksrkrfPksalwllfearieslkgnldeAlelleeii 296
                 d + ++++++  l+    k  Pk a   + +ar+e+  g++  A +++++ +
  CDO69855.1 257 DAEIGDIKRARMLFDSLVKSNPKHAPGWIAAARLEEHAGRMVAARKMIKQGC 308
                 3366788999999999999999999999999***********9999999877 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0043
     DUF3808 246 g..lkapleeleelLlksrkrfPksalwllfearieslkgnldeAlelleeiieesqselkqv 306
                 +  ++a++e+l+++L+++ +  P+  ++ l+ a+ + l g++  A e+le ++  ++se +q+
  CDO69855.1 490 QwlKEAERESLNAILERAVHHCPQAEVLWLMWAKEKWLAGDVPAAREVLERAF-VANSESEQI 551
                 4457899*********************************************9.999999998 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0022
     DUF3808 245 dglkapleeleelLlksrkrfPksalwllfearieslkgnldeAlelleeii 296
                 ++++++l+ + e L+ + k++Pk a + + +++i + +gnl  A + +   i
  CDO69855.1 592 ERQQGQLSTALETLATAIKKYPKFAKLYMIQGQIHQQQGNLAAARASYAAGI 643
                 457899999***********************************99887655 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.1   3.2e+03      25      33 ..     366     374 ..     365     375 .. 0.85
   2 ?    3.3   0.0     0.078        83      12      34 .]     593     615 ..     583     615 .. 0.88
   3 ?    8.5   0.5    0.0017       1.8       1      33 [.     616     648 ..     616     649 .. 0.90
   4 ?    0.6   0.1      0.54   5.7e+02      15      29 ..     746     760 ..     742     764 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
                 HHHHHHSTT CS
       TPR_1  25 ekALelnPn 33 
                 +kALe+ Pn
  CDO69855.1 366 RKALEHIPN 374
                 79***9998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.078
                 HHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  12 fklgkydeAleyyekALelnPnn 34 
                 +++g++  Ale    A++ +P++
  CDO69855.1 593 RQQGQLSTALETLATAIKKYPKF 615
                 79*****************9986 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 ak +   G++++++g++  A + y   ++ +P+
  CDO69855.1 616 AKLYMIQGQIHQQQGNLAAARASYAAGIKACPK 648
                 7889999*****************999998887 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.54
                 T-HHHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekALe 29 
                  k ++A   +e+A+ 
  CDO69855.1 746 RKIEKARHWFERAVA 760
                 5899*********75 PP

>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       9.9     1e+04      39      65 ..     106     132 ..      97     138 .. 0.66
   2 ?   -2.9   0.0       5.3   5.6e+03       9      31 ..     365     387 ..     331     405 .. 0.68
   3 ?   10.8   0.1   0.00031      0.32      49     110 ..     587     645 ..     559     653 .. 0.81
   4 ?    2.3   0.0      0.13   1.4e+02      88     116 ..     739     767 ..     699     794 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.9
        LemA  39 eaRakaaeaesveekaeaenqlssals 65 
                 +aR++a e+e+++++ + + ++++++ 
  CDO69855.1 106 RARREARENEELAKYRAENPKIQQQFA 132
                 456666667777777766666666655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.3
        LemA   9 lkrRaDlipnLvetvkgyakhEk 31 
                 l++  + ipn v+  k   + E+
  CDO69855.1 365 LRKALEHIPNSVRLWKETVNLES 387
                 44445556666666555555555 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00031
        LemA  49 sveekaeaenqlssalsrllavaEnYPdLkanenfleLqeelegtEnriavaRrrYneavre 110
                 + + +++++ qls+al++l +   +YP++   +++  +q ++++ + ++a+aR  Y + +++
  CDO69855.1 587 KSAVFERQQGQLSTALETLATAIKKYPKF---AKLYMIQGQIHQQQGNLAAARASYAAGIKA 645
                 556678899******************98...578899******************987765 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.13
        LemA  88 eelegtEnriavaRrrYneavreyntkie 116
                 + l + E++i+ aR+ + +av++ ++  +
  CDO69855.1 739 DALRKAERKIEKARHWFERAVAASENPSD 767
                 67999***************998766555 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.2   5.5e+03      21      38 ..     178     195 ..     177     197 .. 0.77
   2 ?   -2.7   0.0         7   7.4e+03      13      30 ..     413     430 ..     409     435 .. 0.58
   3 ?   -2.8   0.0       7.5   7.9e+03      57      71 ..     527     541 ..     525     542 .. 0.71
   4 ?   -0.4   0.0       1.4   1.5e+03      13      33 ..     559     579 ..     549     582 .. 0.68
   5 ?    8.4   1.0    0.0024       2.6       2      74 ..     581     645 ..     580     648 .. 0.82
   6 ?    4.0   1.2      0.06        63       9      33 ..     622     646 ..     614     677 .. 0.63
   7 ?   -1.2   0.0       2.5   2.6e+03      13      30 ..     660     677 ..     649     685 .. 0.67
   8 ?    3.0   0.1      0.12   1.2e+02      17      75 ..     745     762 ..     735     767 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.2
      TPR_12  21 eAlellekaleiarrllG 38 
                  A++ +e++l+ ++++ G
  CDO69855.1 178 RARTEYETSLDTRQQATG 195
                 588889999999988766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7
      TPR_12  13 lrrlgrydeAlellekal 30 
                 l+rl+  d+A + l+ka+
  CDO69855.1 413 LARLETPDKAKAVLNKAR 430
                 455555555555555554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.5
      TPR_12  57 algryeeAlelleea 71 
                 ++g+  +A+e le+a
  CDO69855.1 527 LAGDVPAAREVLERA 541
                 567777888888877 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.4
      TPR_12  13 lrrlgrydeAlellekaleia 33 
                 +++ g++d A+ell +a+ +a
  CDO69855.1 559 EAENGELDVARELLVRARTVA 579
                 355777777888777777665 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0024
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 + +++ + a+++r++g++  Ale l +a   +     +++p  a  +   g++++++g++++A++ +   +++
  CDO69855.1 581 TERIWMKSAVFERQQGQLSTALETLATA---I-----KKYPKFAKLYMIQGQIHQQQGNLAAARASYAAGIKA 645
                 667888899999*****99999999999...4.....556667999999999999999999999998766665 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.06
      TPR_12   9 laavlrrlgrydeAlellekaleia 33 
                  +++++++g+++ A++ + + + ++
  CDO69855.1 622 QGQIHQQQGNLAAARASYAAGIKAC 646
                 5777777777777777776555444 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2.5
      TPR_12  13 lrrlgrydeAlellekal 30 
                 + + g+  +A++ll+ka+
  CDO69855.1 660 EEADGKSIKARALLDKAR 677
                 445566667777777765 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.12
      TPR_12  17 grydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +                                          + e+A+ ++e+a+a+ 
  CDO69855.1 745 E-----------------------------------------RKIEKARHWFERAVAAS 762
                 3.........................................45566666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.52
# Mc/sec: 4775.46
//
Query:       CDO69856.1  [L=573]
Description: hypothetical protein BN946_scf184884.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-43  147.6   0.0    8.7e-43  146.9   0.0    1.2  1  Asp             Eukaryotic aspartyl protease
    1.3e-06   28.8  11.1    9.2e-06   26.0   5.5    3.5  3  TAXi_N          Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
       0.13   12.9   4.1          3    8.5   1.9    3.1  2  Asp_protease_2  Aspartyl protease
        6.7    5.0  10.2         11    4.3  10.2    1.2  1  DUF515          Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.9e-46   8.7e-43       2     307 ..      76     439 ..      75     442 .. 0.86

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 1.9e-46
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTT...S.EEEEEEEEEEEEETTEEEEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGd...g.svsGflsqdtvkvggltvknqefgeatke 96 
                 Y   +++G +  +  v +DTGSsdlWV+s+ c+ +++c++ s   +  + t+k +g+s++++YGd   g ++sG +++dtv+++ lt+ nq+++ ++ +
  CDO69856.1  76 YTVAVTVGES--TTAVNLDTGSSDLWVMSTACH-TKQCQQTSSQPYDVTKTFKPSGHSVTLNYGDsvtGtHASGPVGRDTVTLAALTMANQTLAAVNDT 171
                 7788888877..78999***************9.8899999998888899**************74446789*************************99 PP

                 SSHHHTTSSSSEEEE-S-GGGSCGG........SCCHHHH....................HHHTTSSSSSEEEEEE-S...TTSSEEEEEESSEEGGGE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx....................xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
         Asp  97 pgstflaakfdGiLGlgfkeisvee........atpvfdn....................lvsqglikepvfsvylnr...eeeeggeivfGgvDesky 164
                 ++s  ++    GiLGlgf+++s ++                                   lvs+ +i+ep+f++ l+r   + + +g+i+ G + e   
  CDO69856.1 172 DNSA-VSNGGAGILGLGFPAQSFVQeaaitaefP-----SisgtdtfveqiassgpflsrLVSNDMIDEPLFAITLQRdtiDVSGQGQITIGQLPEGVD 264
                 9975.55559************999777655550.....244444455568888888888******************9888899************** PP

                 EEEEEEEEESS................TSS...TEEEEEEEEETTEEE.........EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET.TCE CS
                 xxxxxxxxxxx................xxx...xxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
         Asp 165 kGsltyvpvts................kgy...wqielesvtvggktv.........lcssgcqailDtGTsllalptsivekiakaigakkses.ege 234
                 + s+t+vpv                  ++y   w++e+++v ++gk++         +++ + +a++DtG sl+ +p+++v++i k+++ +   + + +
  CDO69856.1 265 NSSITWVPVRLydpadgglqapsfapnEKYplrWEVEIDGVYLDGKKLpdskqqasgIQTPSLSALIDTGNSLIRGPSDVVTDILKQVSPTFAGNpSAQ 363
                 *********9999************99444566**************9988877777777788888**********************99865442478 PP

                 EEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE......EECCTSSSEEEEHHHHTTEEEEEETTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 235 yvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl......vseeegdlwiLGdvFlrsayvvfdldn 307
                  ++ Cd+    ++++f+i+g+ + v ++++v +   +++  C+ +        s     +w LGd Fl+s  vvf ++n
  CDO69856.1 364 PILPCDA---GHNLTFQIDGKFFPVDPRDFVSQFLPDDAVNCVANNvvstdpPSMGALFSWNLGDPFLKSNLVVFYYGN 439
                 999***7...999********************9999999**9986667532223334579**************9998 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   5.5   2.1e-09   9.2e-06       1     151 [.      76     199 ..      76     206 .. 0.72
   2 ?   -1.3   0.0      0.48   2.2e+03       7      48 ..     322     361 ..     319     370 .. 0.77
   3 ?   -1.3   0.1       0.5   2.2e+03     143     163 ..     530     549 ..     497     555 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.1e-09
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y+v++ +G+   ++ + +DtGs+ +Wv  ++c+                   + +c++   +  +  ++ k++ +s t +y  s  +++ ++sG +++d
  CDO69856.1  76 YTVAVTVGES--TTAVNLDTGSSDLWVMSTACH-------------------TKQCQQTSSQPYDVTKTFKPSGHSVTLNYGDSV-TGT-HASGPVGRD 151
                 8899999987..777888999999999994444...................222222222211344555566666666666666.355.********* PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgk.snlgglaagadGilGLGrgklSlvsqlas 151
                 t+tl        +++n +++ ++ ++++ + +g +GilGLG+ + S+v+ +a 
  CDO69856.1 152 TVTL-----AALTMANQTLAAVNdTDNSAVSNGGAGILGLGFPAQSFVQEAAI 199
                 ****.....66788877777777689999999****************99884 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.48
      TAXi_N   7 iGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsks 48 
                 i tp  +l++++DtG +l+    +  ++  +q +p+f  + s
  CDO69856.1 322 IQTP--SLSALIDTGNSLIRGPSDVVTDILKQVSPTFAGNPS 361
                 5566..88999*****99988888888888887777776655 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.5
      TAXi_N 143 lSlvsqlaskgslgnkFsyCL 163
                  + +sqlas+ s ++ +sy L
  CDO69856.1 530 TAAPSQLASQ-SSSASLSYRL 549
                 4567888877.6777888777 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.9   0.00068         3       1      90 []      78     188 ..      78     188 .. 0.64
   2 ?    2.4   0.0     0.056   2.5e+02      10      30 ..     327     347 ..     319     357 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00068
  Asp_protease_2   1 vpvtinGkpvrfllDTGastt.lispelaeklglkvrese..ltvrvsgaggevkarlvrlds............lklggltlknvpalvld... 77 
                     v vt+++ ++ + lDTG+s + ++s++  +k   ++++++  +t++++ +g +v+  ++   +            ++l+ lt+ n++++ ++   
      CDO69856.1  78 VAVTVGESTTAVNLDTGSSDLwVMSTACHTKQCQQTSSQPydVTKTFKPSGHSVTLNYGDSVTgthasgpvgrdtVTLAALTMANQTLAAVNdtd 172
                     6799999************8636666666555334433330044555556666666666666666677777777799999999999977777344 PP

  Asp_protease_2  78 ...lgeeidglLGmdf 90 
                          ++ +g+LG+ f
      CDO69856.1 173 nsaVSNGGAGILGLGF 188
                     3333334469999765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.056
  Asp_protease_2  10 vrfllDTGasttlispelaek 30 
                     +++l+DTG s +  +++++++
      CDO69856.1 327 LSALIDTGNSLIRGPSDVVTD 347
                     799******988777777766 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  10.2    0.0024        11     306     372 ..     487     549 ..     480     555 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0024
      DUF515 306 agsisvSEsqsqsssvseesstsssessstsespGdvsisdsssasdsssvsqstseslsssisYsv 372
                 ++si + E  s + +  +++st +s+  s s  p  ++    + as++ + sq +s+s+s+s+sY +
  CDO69856.1 487 TSSILIKEGGSAAPTLTTSASTATSSAPSHSTNPSLAA----KPASTTAAPSQLASQSSSASLSYRL 549
                 57788888888888888888888888878888887665....5677888899*************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3834.53
//
Query:       CDO69857.1  [L=681]
Description: hypothetical protein BN946_scf184884.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  114.5   4.1    2.2e-12   46.8   0.1    3.9  4  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.3   1.3e-11   2.3e-07       4      93 ..     362     467 ..     360     469 .. 0.71
   2 !   46.8   0.1   1.2e-16   2.2e-12       9      95 ..     479     563 ..     472     565 .. 0.94
   3 ?   -3.4   0.0      0.52   9.4e+03       2      17 ..     568     583 ..     567     584 .. 0.86
   4 !   35.6   0.0   3.6e-13   6.4e-09      32      94 ..     614     676 ..     610     678 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.3e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH................CCCSSTTTSCSS....HHHHHHHHH.......HHHHHHGGGTTHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqt................qkksskksksaa....ildvlkkiy.......keeGlrglyrGllpnllrv 75 
                 ++l+ellaG+++ga++++v +Pld++Ktr qt                +++        +    +++++   y        e G     r +   l+++
  CDO69857.1 362 RTLNELLAGSVGGAAQVIVGQPLDTIKTRAQTapagmfvstasvytvyHSG--------KanstTFNAVEGSYghtcpnpPEGG---ILRFVQSPLIGI 449
                 5789****************************7777776666555444333........1333466666666644444444444...555577788888 PP

                 HHHHHHHHHHHHHHHHHH CS
   Mito_carr  76 apasalkfvlyetlkrll 93 
                 a  ++l f++y + krl+
  CDO69857.1 450 AGVNSLLFAAYGVSKRLI 467
                 888899999999999887 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  +aGg+agav+++++ P+++ K+r+q q +s ++++   ++ v+ +++++ G+ +g  rG+++++ r +pa a   +++e+ kr + +
  CDO69857.1 479 AAAGGIAGAVNAVLASPVEMFKVRMQGQYGSPSDKR---LRAVVTEMWRDWGFrKGIMRGYWVTVAREIPAYAGFYTAFEFSKRKFAE 563
                 589******************************987...9*************889****************************9875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglaga 17 
                 +++v++ l++G+++g+
  CDO69857.1 568 QIPVWALLASGSTGGV 583
                 6899999****99986 PP

  == domain 4  score: 35.6 bits;  conditional E-value: 3.6e-13
                 HHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  32 rlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 r+q+ ++  + +  ++i++ l  i+ke G++gl+rGl+p+llr++pa+a +f+++e ++++l+
  CDO69857.1 614 RVQLRATPPEGTPIQYIARELALIVKESGVSGLFRGLTPSLLRSIPAAASTFAAFELTREYLK 676
                 7777777777777778999999*************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4726.71
//
Query:       CDO69858.1  [L=537]
Description: hypothetical protein BN946_scf184884.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3429.74
//
Query:       CDO69859.1  [L=1041]
Description: hypothetical protein BN946_scf184884.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-07   31.5   2.4    4.4e-07   30.1   2.4    1.8  1  zf-rbx1       RING-H2 zinc finger domain
    3.1e-06   27.4   2.5    3.1e-06   27.4   2.5    2.0  2  zf-RING_2     Ring finger domain
    0.00081   19.2   2.3    0.00081   19.2   2.3    2.1  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0084   16.0   1.6      0.015   15.1   1.6    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.015   15.1   1.0      0.094   12.6   0.2    2.0  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      0.016   14.8   0.5      0.035   13.7   0.5    1.5  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
      0.028   14.5   0.1      0.064   13.3   0.1    1.7  1  zf-RING_UBOX  RING-type zinc-finger
      0.038   13.9   0.3      0.088   12.7   0.3    1.5  1  CsbD          CsbD-like
      0.074   13.1   0.3      0.074   13.1   0.3    2.2  3  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.08   13.0   1.7       0.21   11.6   1.7    1.7  1  zf-C3H2C3     Zinc-finger
      0.088   13.1   0.0       0.24   11.7   0.0    1.8  1  TBCA          Tubulin binding cofactor A
      0.093   12.7   3.0       0.22   11.5   3.0    1.6  2  zf-RING_5     zinc-RING finger domain
       0.13   12.2   4.1       0.18   11.7   1.9    2.0  2  Prok-RING_4   Prokaryotic RING finger family 4
       0.14   12.3   0.3        3.8    7.8   0.0    3.0  3  FliJ          Flagellar FliJ protein
       0.41   10.8   3.6       0.11   12.6   0.3    1.8  1  RINGv         RING-variant domain


Domain annotation for each model (and alignments):
>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   2.4   3.7e-10   4.4e-07       2      55 .]     350     416 ..     349     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.7e-10
     zf-rbx1   2 tCaiCrneleeacieckapgdee............cpvvlGeC..gHaFHlhCiskWlktrkvCPlcr 55 
                  CaiCr +l +   e +a +                 +++  C  +H FH +C+s Wl ++++CP cr
  CDO69859.1 350 GCAICRDSLLDISFEDQAIEVVAlyaalpfhpelsSIIAF-PCpgKHIFHADCLSPWLAQKTTCPSCR 416
                 6999999998888888888777788888999998544444.66558*********************8 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.2   1.4e+03       3      10 ..     351     358 ..     349     370 .. 0.79
   2 !   27.4   2.5   2.6e-09   3.1e-06      17      44 .]     387     416 ..     377     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
   zf-RING_2   3 CpICleel 10 
                 C+IC ++l
  CDO69859.1 351 CAICRDSL 358
                 9***9877 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 2.6e-09
   zf-RING_2  17 lllpCg..HvfhreClerwlrssstCPlCr 44 
                 ++ pC   H+fh +Cl+ wl+++ tCP Cr
  CDO69859.1 387 IAFPCPgkHIFHADCLSPWLAQKTTCPSCR 416
                 4458844599*******************9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.51   6.1e+02       2      11 ..     351     360 ..     350     363 .. 0.85
   2 !   19.2   2.3   6.8e-07   0.00081      16      40 .]     389     415 ..     382     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.51
  zf-C3HC4_2   2 CpiCldmlkd 11 
                 C+iC d+l d
  CDO69859.1 351 CAICRDSLLD 360
                 ******9865 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 6.8e-07
  zf-C3HC4_2  16 tpC..gHvfCqkCilrsLeekneCPlC 40 
                 +pC  +H f+++C+ ++L +k  CP C
  CDO69859.1 389 FPCpgKHIFHADCLSPWLAQKTTCPSC 415
                 466558********************* PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.6   1.3e-05     0.015       1      41 []     351     415 ..     351     415 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
                 -TTT-S--SS-E.........................E-TT..S--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn........................elleC..kHsfCskCirkilksrkkvkCPlC 41 
                 C+iC + + +++                         + +C  kH f+ +C++ +l   +k++CP C
  CDO69859.1 351 CAICRDSLLDISfedqaievvalyaalpfhpelssiIAFPCpgKHIFHADCLSPWLA--QKTTCPSC 415
                 99999999999999999999999999999999999966677669*************..9999**** PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.5     6e+02      36      46 ..     347     357 ..     338     361 .. 0.72
   2 ?   12.6   0.2   7.9e-05     0.094      14      48 ..     385     420 ..     381     421 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.5
                 TT-B-TTT--B CS
  zf-C3HC4_3  36 rkkkCpiCrrp 46 
                  ++ C iCr +
  CDO69859.1 347 DQDGCAICRDS 357
                 56778888865 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.9e-05
                 -EEETTE..EEEEE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3  14 nvvllpC..gHlvlCeeCaekllkrkkkCpiCrrpie 48 
                 +++  pC  +H+ +  +C++ +l++k++Cp Cr +i+
  CDO69859.1 385 SIIAFPCpgKHI-FHADCLSPWLAQKTTCPSCRFDID 420
                 566777765899.99******************8875 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   2.9e-05     0.035      23      47 ..     392     414 ..     383     416 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
  Zn_ribbon_17  23 vCeHvlHasCarewfenddlaeCps 47 
                     +H+ Ha+C++ w+ ++    Cps
    CDO69859.1 392 PGKHIFHADCLSPWLAQKT--TCPS 414
                   358***********99988..8887 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.3e-05     0.064       1      39 []     351     413 ..     351     413 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-05
  zf-RING_UBOX   1 CpIClelft....................dP....lvl.pCG..HtFCreClwelskslegafkCP 39 
                   C IC++++                     +P    ++  pC   H+F+ +Cl   s++l ++ +CP
    CDO69859.1 351 CAICRDSLLdisfedqaievvalyaalpfHPelssIIAfPCPgkHIFHADCL---SPWLAQKTTCP 413
                   88888633336666888888888888777777775444477666********...9*********9 PP

>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   7.4e-05     0.088       8      35 ..    1000    1027 ..     998    1028 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.4e-05
        CsbD    8 eqvkGkvKeaaGkaTgdekleaeGkadq 35  
                  e +kG++ + aGk+Tg++ l  +G+ ++
  CDO69859.1 1000 ERLKGNAEKLAGKVTGNPNLVEKGQVRK 1027
                  679*********************9876 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.2   3.8e+03      20      29 ..     347     356 ..     341     361 .. 0.74
   2 ?   13.1   0.3   6.2e-05     0.074      53      79 ..     394     417 ..     381     422 .. 0.82
   3 ?   -3.1   0.0       7.2   8.6e+03      60      79 ..     452     471 ..     450     474 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
                 SSSB-TTT-S CS
  zf-ANAPC11  20 sddvcGicrv 29 
                 ++d c icr 
  CDO69859.1 347 DQDGCAICRD 356
                 5678999985 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.2e-05
                 S-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  53 khnfhlhcilkwletetskglcpmcrq 79 
                 kh+fh+ c+  wl+++t    cp cr 
  CDO69859.1 394 KHIFHADCLSPWLAQKT---TCPSCRF 417
                 8************9865...6999985 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.2
                 HHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  60 cilkwletetskglcpmcrq 79 
                  i +wl++e+  +   + rq
  CDO69859.1 452 TIREWLDAEEQAQASGVPRQ 471
                 5889***9999888877777 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   0.00018      0.21      11      34 ..     385     415 ..     384     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
   zf-C3H2C3  11 pfvaysC..kHlvHakC.....adeevCPkC 34 
                 ++ a+ C  kH++Ha+C     a+++ CP C
  CDO69859.1 385 SIIAFPCpgKHIFHADClspwlAQKTTCPSC 415
                 5678888779*******75555589****** PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.24      40      72 ..     278     310 ..     271     336 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
        TBCA  40 eydlkkqeevleetkamipdlkkrlekavekLe 72 
                 e + +  +evl+ ++++ipdl++rl++  ++L 
  CDO69859.1 278 ENTFQVYREVLDRARQVIPDLDQRLSEMAQQLH 310
                 55666779*******************999985 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       5.1   6.1e+03      36      43 ..     348     355 ..     342     356 .. 0.74
   2 ?   11.5   3.0   0.00019      0.22      15      43 ..     386     416 ..     350     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.1
   zf-RING_5  36 eavCpiCr 43 
                 ++ C iCr
  CDO69859.1 348 QDGCAICR 355
                 67799998 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00019
   zf-RING_5  15 fyltsC..gHifCekClkkllekeavCpiCr 43 
                 ++  +C  +Hif+ +Cl+  l+++ +Cp Cr
  CDO69859.1 386 IIAFPCpgKHIFHADCLSPWLAQKTTCPSCR 416
                 556678889*********************8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.88     1e+03      26      39 ..     344     357 ..     343     362 .. 0.80
   2 ?   11.7   1.9   0.00015      0.18      15      44 ..     390     423 ..     382     425 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.88
  Prok-RING_4  26 dskdlssCPlCqrr 39 
                  d++d  +C +C+  
   CDO69859.1 344 DKEDQDGCAICRDS 357
                  5678889****976 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
  Prok-RING_4  15 pC..gHlvCkeCfdsk..dlssCPlCqrrisksd 44 
                  pC  +H++  +C++ +  + ++CP C+  i++++
   CDO69859.1 390 PCpgKHIFHADCLSPWlaQKTTCPSCRFDIDPHS 423
                  56558***********76667******9999875 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.5   1.8e+03       5      37 ..     279     311 ..     275     324 .. 0.61
   2 ?   -0.2   0.0      0.94   1.1e+03       3      33 ..     538     568 ..     535     579 .. 0.63
   3 ?    7.8   0.0    0.0032       3.8      10      86 ..     645     715 ..     641     720 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.5
        FliJ   5 reLaeaqrelqqaeekleeleqyrqeyqkqlsg 37 
                 ++++  +  l++a++ +  l q ++e+++ql g
  CDO69859.1 279 NTFQVYREVLDRARQVIPDLDQRLSEMAQQLHG 311
                 555555555566666666666666666665554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.94
        FliJ   3 aareLaeaqrelqqaeekleeleqyrqeyqk 33 
                 a r ++e+++++ +ae++  ele+ +++ + 
  CDO69859.1 538 ALRDVEEMRQRFLNAEARRVELENILARTSF 568
                 5556666677777777766666666655555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0032
        FliJ  10 aqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqear 86 
                 a ++l++ e++l ++++y +++  +  +            +++ i+ l++a+++++ +++++ +++e+ re++ e r
  CDO69859.1 645 AVQRLADFEQELRNMRRYVDNLGHRPDYVV------VPTSFENVIEGLERAVESARADVDRSAAAREAGRERLAELR 715
                 567777788888888888888866666665......77889*******************************99876 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   9.6e-05      0.11      20      48 .]     391     415 ..     385     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.6e-05
                 -STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  20 CrGslklvHesClekWldekeantqCeiC 48 
                 C G  +++H +Cl+ Wl +   +t+C  C
  CDO69859.1 391 CPG-KHIFHADCLSPWLAQ---KTTCPSC 415
                 777.689************...6677666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7101.67
//
Query:       CDO69860.1  [L=587]
Description: hypothetical protein BN946_scf184884.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-54  183.4   0.4    8.6e-54  183.1   0.4    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.4   4.8e-58   8.6e-54      45     304 ..     116     427 ..      26     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 4.8e-58
                    HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHHHHHHHHHHTT...........SSSEEEETTSS--TT-BTTB- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  45 keYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgavleavdavlsg...........svkaafvlvrPpgHHakasea 129
                    + Yle+l+++++++++k++  e e  ++     ++d ++sp++l+a++ a g v+eavdav+ g           ++++afv++rPpgHH+ ++++
     CDO69860.1 116 NVYLENLKTWAKDSQEKVNKGESEIPDGY---SQGDLYLSPGSLDAIQGALGTVCEAVDAVVAGatqsassseqqQSNQAFVAIRPPGHHCGEDTP 208
                    45777889999999999876666666555...579***************************999999999999888999**************** PP

                    BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT.....................-TTEEEEEEEE-CCTSTT.SS--TT---... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxx.xxxxxxxxx... RF
  Hist_deacetyl 130 sGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafys.....................dpdvltlSiHryegifyP.gtgaledlg... 200
                    sGFC+vNnva+++ ++  kh+++rv+++D+D+HhGnGt+++++s                       +v++ SiH+     yP + g++e ++   
     CDO69860.1 209 SGFCFVNNVAVGAAHAHFKHGINRVVMFDIDLHHGNGTQSIAWSineetyrkqlevehgapagkpGLQVFYGSIHD--ILSYPcEDGKAELIQaas 302
                    *******************************************9888999999999988888877789********..678**6667777666444 PP

                    ...SGGGTT....SEEEEEE-TT-BHHHHHHHH............HHCHHHHHCCH--SEEEEEE-STTBTTS....TT-S-BB-HHHHHHHHHHH CS
                    ...xxxxxx....xxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 201 ...egkgkg....fnlnvpleegtgdeeylkvf............eeilrpvleefkPdlilvsaGfDalkgd....plgelnlsvegykeltkkl 273
                       +    g    +  n++l+++++d+e+++ +            + ++++   + +  l+ vs+GfDa++++      ++ ++ +  y+++ ++ 
     CDO69860.1 303 vsiH----GphgqYVENIHLKPYVSDNEFWEKLypghyqrlldkaRDFIENTGGARDDTLVFVSCGFDASEHEypsmSRHQRKVPTGFYHRFAQDA 394
                    4443....155669****************99989998888777777777777778999**************99888888899999********* PP

                    CCCHGS-.G..EEEEE-S---HHHHHHHHHHHH CS
                    xxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 274 aeladkv.k.kvvllleGGYnlealaravtavl 304
                    +++ad + + +++++leGGY+++al +++ a+l
     CDO69860.1 395 RKFADMYaRgRLISVLEGGYSDRALTSGAMAHL 427
                    *******999*************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 3548.68
//
Query:       CDO69861.1  [L=190]
Description: hypothetical protein BN946_scf184884.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.6    8.0   5.2        5.7    7.4   5.2    1.3  1  NUDE_C    NUDE protein, C-terminal conserved region


Domain annotation for each model (and alignments):
>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.2   0.00032       5.7      95     168 ..      44     116 ..       9     130 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00032
      NUDE_C  95 ssPviatppeks.lsslatgsetatppsPpasessdllrkvlaltsklarqrasisdsaask......rsnsrslrssrkq 168
                 s+P  +t p    +s +    ++ t+p P +se  +l+    +l +  +r+r s +++   +      +        s+ +
  CDO69861.1  44 STPFKKTAPPPPdFSVVV--VNARTSPMPTISELTQLFGELPELPPPAPRKRISFAQQKLAAastaasT------GPSSSA 116
                 667666654444033333..5679****************************99999854443322211......222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1506.54
//
Query:       CDO69862.1  [L=707]
Description: hypothetical protein BN946_scf184884.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-53  182.4   0.1    2.5e-53  181.9   0.1    1.2  1  DAO            FAD dependent oxidoreductase
    5.4e-46  155.6   0.0      9e-46  154.8   0.0    1.4  1  DAO_C          C-terminal domain of alpha-glycerophosphate ox
    4.3e-07   29.4   5.7      4e-06   26.2   5.7    2.0  1  FAD_binding_2  FAD binding domain
    5.5e-06   26.0   2.0    8.2e-05   22.1   1.2    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
    0.00032   20.0   0.3     0.0013   18.1   0.3    1.9  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0013   18.1   0.8      0.011   15.0   0.8    2.1  1  FAD_binding_3  FAD binding domain
     0.0021   18.2   0.5       0.01   16.1   0.5    2.1  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0032   16.6   0.5      0.076   12.1   0.1    2.3  2  GIDA           Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.012   14.7   0.2        1.1    8.3   0.2    2.2  2  Lycopene_cycl  Lycopene cyclase protein
      0.029   13.1   0.3      0.045   12.5   0.3    1.2  1  HI0933_like    HI0933-like protein
      0.029   14.9   0.2      0.076   13.6   0.2    1.7  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.041   13.8   0.1      0.081   12.8   0.1    1.5  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.073   12.3   0.0        0.2   10.9   0.0    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.097   11.9   0.2       0.18   11.0   0.2    1.4  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9   0.1     2e-56   2.5e-53       1     352 []      17     383 ..      17     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 2e-56
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.....HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEES. CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.....elarlslealeelreleeelgididyrrtGllslaa. 91 
                 d++i+GGG +G+++A ++a rg  V+l+e++ +++sg+S+++++l+h+g+ryl++a      e+++l+ eal+e++ + ++ ++ +    + +l+++  
  CDO69862.1  17 DLLIVGGGATGAGVAVDAASRGlkVALVERD-DFSSGTSSKSTKLVHGGVRYLQKAVmeldyEQYKLVVEALHERKIFLQT-APYLSAMLPIMLPIYKy 113
                 789****************************.8888***************9998889****888**************98.88777777888888633 PP

                 ..SHHHHHHHHHHHHHH.HHTTTTE.EEEEHHHHHHHSTTST..TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE..TCEEEE CS
         DAO  92 ..deeelealdkllall.leaglda.elldaeevrelepalp..gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeed..gkvwgv 182
                    +  + ++ k+++ll ++ + ++ +l+++ +++e +p+l+  gl+gal+y+d gq ++ ++  al  +a ++G+ + ++ evt+l++++  gk++g 
  CDO69862.1 114 wqVPYYWVGC-KMYDLLaGKENMESsYLMSRGKALETFPMLKqeGLVGALVYYD-GQHNDSRMNMALIMTAVQQGAIVANHVEVTSLDKNGvaGKIQGA 210
                 3222334445.7777767445566636899988*******4446**********.999*****************************776577666666 PP

                 E...EECTEEEE..EEEE..EEE--GGGHH.HHHTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEE CS
         DAO 183 e...rttpgend..aada..vVnaaGawsd.llgll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadee 272
                 +     t g  +   ++a  vVna+G++sd ll ++ ++  + ++p  g++++l p   ++     +l +p  + dgr+++++p+  g++++G+t+++ 
  CDO69862.1 211 RvrdGLT-G--QewNIRAkgVVNATGPFSDaLLSMDnPNHTPIVQPSSGTHITL-PNYYSPRT--MGLLDP-ATSDGRVIFFLPWQ-GNTIAGTTDSPA 301
                 4545333.3..233356677**********76677753333556**********.66664433..444444.8899*********5.99******9766 PP

                 TTCSSTSCSHHHHHHHHHHHHHHS.GGG....CGEEEEEEEEEEE...TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 273 sgdddpevdeedidellealrklf.Pql....gdvlrkwaGlrpl...pdglpligetpgvkglylatGhsghGltlapatGkllael 352
                 + + +p ++ee+i+++le++r+++ P++    gdvl++w+Glrpl   p+     g    v+++ +    s +Gl + ++ Gk+++++
  CDO69862.1 302 EVTASPLPQEEEIRWILEEVRRYLsPDIkvrrGDVLSAWSGLRPLvrnPNAASTEGL---VRNHMIHV--SDSGLLTIAG-GKWTTYR 383
                 666669******************8884456699**********5322333333333...45555543..669*******.***9986 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.8   0.0     7e-49     9e-46       1     126 []     407     534 ..     407     534 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.8 bits;  conditional E-value: 7e-49
                 --TTS---TT--.......TT-STTHT--HHHHHHHHHHHGGGHHHHHHHHHHTH.....HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HH CS
       DAO_C   1 crTkklpLvGaenwsknlaaelaqeygldeevaehLaerYGsraeevlelakedekp..elaerlspelpyieaevvYavrhEmartlvDvlaRRtrla 97 
                 c+T++l+LvG+++ws+n+++ l+q+ygl++eva+hL+e+YG+ra++v++la+ ++k    ++ rl+p +p ieaev+Yav+hE+a+t+vDv+aRR+rl+
  CDO69862.1 407 CVTEQLRLVGSDGWSRNMFIGLVQRYGLETEVAKHLSENYGDRAWTVCSLAEPTGKAwpLHGIRLAPGYPSIEAEVRYAVKHEYAQTAVDVIARRCRLS 505
                 9*****************************************************9988899************************************** PP

                 HH-HHHHHHHHHHHHHHHHHHTT--HHHH CS
       DAO_C  98 fldadaalealpevaelmaeelgWdearr 126
                 fl+a+aal+alp+v+e+maeel+W++arr
  CDO69862.1 506 FLNAQAALDALPRVVEIMAEELQWSSARR 534
                 *************************9986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   5.7   3.1e-09     4e-06       1     206 [.      17     239 ..      17     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.1e-09
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG-....-S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggataws....qGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaape 91 
                    D++++G+G+ G   A+ aa +Glkva+ve  +  +g++  s     Gg+  + +  +    + d   ++ + +++al+e+    + + ++ +  p 
     CDO69862.1  17 DLLIVGGGATGAGVAVDAASRGLKVALVERDDFSSGTSSKStklvHGGVRYLQKAVM----ELD--YEQYKLVVEALHERKiFLQTAPYLSAMLPI 106
                    89*******************************999887772222455555553333....323..334444455556666666666666666777 PP

                    HHHHHHHTT----B............CCTS..SB-EEE-TT-SST...........EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESE CS
  FAD_binding_2  92 avdeLeelgvpfsr............tedg..pvdvrelGglsat...........artlhdaadarretlvtghallarlvesarkagvdfqert 162
                    ++   + + vp+ +            +  +    ++  +G+  +t           a++ +  +++      +  ++  +l+ +a + g  + ++ 
     CDO69862.1 107 MLPIYKYWQVPYYWvgckmydllagkE--NmeSSYLMSRGKALETfpmlkqeglvgALVYY-DGQH------NDSRMNMALIMTAVQQGAIVANHV 193
                    777777778888888888888877653..13466666677777778888866666555666.5555......88888888888888999******* PP

                    EEEEEEECTT...EEEEEEEEETTTTCEEEEEESEEEE-----GG.. CS
  FAD_binding_2 163 eadeLivedg...rvtGavvenpesgrevrirakavvlatgGfgral 206
                    e+++L  + g   ++ Ga v++  +g+e  irak+vv atg f+ al
     CDO69862.1 194 EVTSLDKN-GvagKIQGARVRDGLTGQEWNIRAKGVVNATGPFSDAL 239
                    *****664.3455********99********************9722 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   1.2   6.4e-08   8.2e-05       1      40 [.      17      56 ..      17      75 .. 0.91
   2 ?    2.3   0.0     0.066        84      86     144 ..     172     233 ..     136     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.4e-08
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40
                  D+++vGGg+ G   A+ Aa +G kv+Lve++++  G++++
    CDO69862.1 17 DLLIVGGGATGAGVAVDAASRGLKVALVERDDFSSGTSSK 56
                  99*****************************998888775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.066
  FAD_oxidored  86 pevakavleemlaeagvtvllntrlvevekeg..kriesvtveske.g.rktirAkvfiDATg 144
                    +++ a++   +++ g  v  + ++++ +k+g  ++i++ +v++   g + +irAk ++ ATg
    CDO69862.1 172 SRMNMALIMTAVQQ-GAIVANHVEVTSLDKNGvaGKIQGARVRDGLtGqEWNIRAKGVVNATG 233
                   44444555555555.8889999999*****976678******99888899************8 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   9.9e-07    0.0013       2     108 ..      17     233 ..      16     255 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.9e-07
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.......................................... 57 
                  d++++GgG+ G  +a ++a  g+kv+lv +++ +  g+ + s++l++ + ++ + +                                          
   CDO69862.1  17 DLLIVGGGATGAGVAVDAASRGLKVALV-ERDDFSSGTSSKSTKLVHGGVRYLQKAvmeldyeqyklvvealherkiflqtapylsamlpimlpiyky 113
                  889*************************.444455444444444433332221111232323222222233333333336666666666666666666 PP

                  ................................................................HHHHCHHHHCCCCHCCTCEEEEESC..EEEEETE CS
                  ................................................................xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Pyr_redox_2  58 ................................................................evvkklnqgielllgeevvkidpgk..kkvklek 89 
                                                                                    ++ ++qg ++ + +ev+++d++   +k++   
   CDO69862.1 114 wqvpyywvgckmydllagkenmessylmsrgkaletfpmlkqeglvgalvyydgqhndsrmnmaLIMTAVQQGAIVANHVEVTSLDKNGvaGKIQGAR 211
                  66666666666666666666666666666666666666666666666666666666666665553344445555555555566665443334444444 PP

                  EEC...TCEEEEEESEEEE--- CS
                  xxx...xxxxxxxxxxxxxxxx RF
  Pyr_redox_2  90 kke...gdeekiaydklvlAtG 108
                   ++   g+e +i ++ +v AtG
   CDO69862.1 212 VRDgltGQEWNIRAKGVVNATG 233
                  3335555555666666666666 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.8   8.8e-06     0.011       2     166 ..      16     236 ..      15     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.8e-06
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................. CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.radglnqrtmellrqlGledrilaegapnelmgealyne................. 79 
                     d lIVG+G +G+  a   +++G +v lve+ +  + ++ ++  l    ++ l+++ +e  +++   + e  +e    +                 
     CDO69862.1  16 FDLLIVGGGATGAGVAVDAASRGLKVALVERDDFSSGTSsKSTKLVHGGVRYLQKAVMELDYEQYKLVVEALHER---Kiflqtapylsamlpiml 108
                    5789*****************************9999988****************9999988887555444333...23335679999******* PP

                    ................................CCCC....CEEEEEHHCHHCST-CEE--H...HHHHHHHHHHHHHHTEEETCSEEEECCEECC. CS
  FAD_binding_3  80 ................................lsdt....pkaradlelesspervtvypq...teleriLvehaeerglqvrfktevesleqde. 135
                                                    +s+       ++++ e    +  v+  +q   ++++ +L+  a+++g+ v  + ev+sl +++ 
     CDO69862.1 109 piykywqvpyywvgckmydllagkenmessylMSRGkaleTFPMLKQE-GLVGALVYYDGQhndSRMNMALIMTAVQQGAIVANHVEVTSLDKNGv 203
                    ****99999999999999999888887777763333566544444444.44555555555511156777899999************998877652 PP

                    ..CCCCCEEEECCTTEEEEEEEEEEEE--GTT- CS
  FAD_binding_3 136 ..egvtaevrdketgeeetvrakYlvGaDGgrS 166
                      +   a+vrd  tg+e ++rak +v a G  S
     CDO69862.1 204 agKIQGARVRDGLTGQEWNIRAKGVVNATGPFS 236
                    2133458888999**********9999999866 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   7.9e-06      0.01       1      39 [.      20      58 ..      20      78 .. 0.86
   2 ?   -2.3   0.0       4.1   5.3e+03      31      49 ..     375     394 ..     372     403 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.9e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasye 39
                   IvG+G++G+  A  +a +g++v l+e+ d  +G ++  +
     CDO69862.1 20 IVGGGATGAGVAVDAASRGLKVALVERDDFSSGTSSKST 58
                   9***************************99999887664 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
                    SSGGG-EECE.TTCEECTS- CS
  NAD_binding_8  31 lGGraasyev.pgvrvdyga 49 
                     GG++++y+   + +vd   
     CDO69862.1 375 AGGKWTTYRAmAEETVDKAI 394
                    69999999886566666655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1     6e-05     0.076       1      37 [.      17      51 ..      17      86 .. 0.74
   2 ?    2.3   0.0     0.054        69     118     158 ..     195     242 ..     176     258 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtiae 37
                d+ ++GgG  G   A+ aa +G+kv+L+  + d++ +
  CDO69862.1 17 DLLIVGGGATGAGVAVDAASRGLKVALV--ERDDFSS 51
                5789***********************9..3344443 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.054
                 EEEEEECT...TEEEEEEET.....TS-EEEECEEEE--TT-BT-EEEE CS
        GIDA 118 veelivee...kkvkgvvte.....dgetikakavviatGtflkgkihi 158
                 v++l+  +   +k++g + +     ++  i+ak vv atG+f+++   +
  CDO69862.1 195 VTSLDK-NgvaGKIQGARVRdgltgQEWNIRAKGVVNATGPFSDALLSM 242
                 444433.23555555554440000045578999*********9887665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00082       1.1       1      33 [.      17      47 ..      17      73 .. 0.92
   2 ?    4.2   0.0     0.014        18     123     179 ..     215     277 ..     172     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00082
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   D++++G+G+ g  +A     a  glkv l+e  
     CDO69862.1 17 DLLIVGGGATGAGVAVDA--ASRGLKVALVERD 47
                   99**************99..99********865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
  Lycopene_cycl 123 vleggr.kirarlvvdarglaslk......karrlglQtfyGvevevdnppfdldkmvlMDfrv 179
                     l g + +ira+ vv a+g +s        ++ +  +Q   G  + + n  + + +m l+D  +
     CDO69862.1 215 GLTGQEwNIRAKGVVNATGPFSDAllsmdnPNHTPIVQPSSGTHITLPNY-YSPRTMGLLDPAT 277
                    45566679***********7777799999999999************999.*******999655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   3.5e-05     0.045       2      32 ..      17      47 ..      16      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.5e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 d++++GgGa G   A+ aa+rg +V+l+e+ 
   CDO69862.1 17 DLLIVGGGATGAGVAVDAASRGLKVALVERD 47
                 789*************************975 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   5.9e-05     0.076       2      32 ..      18      48 ..      17      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.9e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                +++vGgG +g  +A  +a  g kV +ver d
  CDO69862.1 18 LLIVGGGATGAGVAVDAASRGLKVALVERDD 48
                69**************************987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.3e-05     0.081       4      32 ..      20      48 ..      17      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-05
                EE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdise 32
                ++G G  Gag+a  +as+gl+V lv++++
  CDO69862.1 20 IVGGGATGAGVAVDAASRGLKVALVERDD 48
                8************************9965 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015       0.2       1     197 [.      19      48 ..       6      89 .. 0.70
   2 ?   -2.7   0.0       2.2   2.8e+03     122     137 ..     222     237 ..     216     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpi 98 
                  +I+G+G+ G ++a+ +   gl ++  +E++                                                                    
   CDO69862.1  19 LIVGGGATGAGVAVDAASRGL-KVALVERD-------------------------------------------------------------------- 47 
                  466666666666666666666.45566655.................................................................... PP

  Pyr_redox_3  99 klfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrg 196
                                                                                                                    
   CDO69862.1   - --------------------------------------------------------------------------------------------------   -
                  .................................................................................................. PP

  Pyr_redox_3 197 s 197
                  +
   CDO69862.1  48 D 48 
                  3 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
  Pyr_redox_3 122 tyeAkkviiAtGefdk 137
                  +++Ak v+ AtG f+ 
   CDO69862.1 222 NIRAKGVVNATGPFSD 237
                  789*********9985 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00014      0.18      17      50 ..      15      47 ..       6      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers 50
                e D++ivG+G++G   a   a + +lkva++er 
  CDO69862.1 15 EFDLLIVGGGATGAGVAVDAASR-GLKVALVERD 47
                78*******************99.********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 4437.40
//
Query:       CDO69863.1  [L=137]
Description: hypothetical protein BN946_scf184884.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-50  169.4   3.1    4.9e-50  169.3   3.1    1.0  1  Histone        Core histone H2A/H2B/H3/H4
    2.6e-05   24.5   0.1    4.1e-05   23.9   0.1    1.3  1  CENP-S         CENP-S protein
    9.9e-05   22.4   0.1    9.9e-05   22.4   0.1    1.5  2  CENP-T_C       Centromere kinetochore component CENP-T histon
     0.0012   19.1   1.3     0.0014   18.9   0.1    1.7  2  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
      0.002   18.7   2.1     0.0026   18.4   2.1    1.2  1  PAF            PCNA-associated factor histone like domain
  ------ inclusion threshold ------
      0.088   12.8   0.1       0.14   12.2   0.1    1.3  1  Bromo_TP       Bromodomain associated
        0.1   12.7   0.2       0.19   11.8   0.1    1.5  2  TFIID-31kDa    Transcription initiation factor IID, 31kD subu


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3   3.1   1.9e-53   4.9e-50       1     131 []       1     133 [.       1     133 [. 0.99

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 1.9e-53
                 XXEESXEEEXXXXEEXXXXXXXXXXHT..TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker..kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealE 97 
                 mar+k++ark+++++ap+k+++ak +r   a+ +   kk++r+rpgtval+eir+yqkst+lli+klpf+R+vrei +++k+dlr++++av+alqea+E
  CDO69863.1   1 MARTKQTARKSTGGKAPRKQLAAKAARktAAPTTGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAAE 99 
                 9**************************989999999*************************************************************** PP

                 HHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  98 allvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 a+lv+lfe++nl+a+haKRvTi+pkD+ lArrlr
  CDO69863.1 100 AYLVSLFEDTNLAAIHAKRVTIQPKDLALARRLR 133
                 ********************************97 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.6e-08   4.1e-05      13      71 ..      71     131 ..      66     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-08
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ ++++ al e   + l +l +D ++ a HAkR ti+++D+ L  R
  CDO69863.1  71 RLVREIAQdfKTDLRFQSSAVMALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDLALARR 131
                 5566654423666789999*************************************99766 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.1     1e+04      56      64 ..      21      29 ..      15      32 .. 0.63
   2 !   22.4   0.1   3.9e-08   9.9e-05      11      76 ..      71     131 ..      59     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.1
    CENP-T_C 56 yakHagRKt 64
                 a+ a RKt
  CDO69863.1 21 LAAKAARKT 29
                455566665 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 3.9e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkr 76 
                  +v+ +a++f     +  + + +a+ al++a + ++  + eD +  a Ha+R ti+ +D+  L +r
  CDO69863.1  71 RLVREIAQDF----KTDLRFQSSAVMALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDLA-LARR 131
                 3455566666....56799****************************************85.4555 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.9   4.9e+03      40      55 ..      21      29 ..      18      32 .. 0.54
   2 !   18.9   0.1   5.5e-07    0.0014       2      64 ..      66     129 ..      65     129 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
                   HHHHHHHHHCCTTSSC CS
  CBFD_NFYB_HMF 40 laseAaeickkekrKt 55
                   l       + k+ rKt
     CDO69863.1 21 L-------AAKAARKT 29
                   3.......44555555 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.5e-07
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A   ++e++e ++ +l + ++  + ++kr ti++++++lA
     CDO69863.1  66 KLPFQRLVREIAQDfKTDLRFQSSAVMALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDLALA 129
                    78888888877778799999*****************************************987 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.1     1e-06    0.0026       1      61 [.       1      58 [.       1      71 [. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-06
         PAF  1 mVRTkAdvssarkavaakAprkslgassssssssssspkkkkkkyvGGNpvcpRptPaWQK 61
                m RTk ++   rk  ++kAprk+l+a+   + ++ +    kk +      v  R++   QK
  CDO69863.1  1 MARTKQTA---RKSTGGKAPRKQLAAKAARKTAAPTTGGVKKPHRFRPGTVALREIRRYQK 58
                99******...*************9998887766444455555555555677777777777 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.5e-05      0.14      23      66 ..      85     128 ..      72     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
                 EE-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHH CS
    Bromo_TP  23 saeesaLEtLteiaqkYirelgeqaksfaehagRseptlkDvvl 66 
                 ++++sa+ +L+e a+ Y+ +l e+++  a ha R + ++kD+ l
  CDO69863.1  85 RFQSSAVMALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDLAL 128
                 5899********************87777************976 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.3   5.9e+03      74      91 ..      11      28 ..       4      35 .. 0.63
   2 ?   11.8   0.1   7.6e-05      0.19      22      66 ..      85     129 ..      68     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
  TFIID-31kDa 74 qfkepppkelLlelAaer 91
                 +  ++ p++ L   Aa++
   CDO69863.1 11 STGGKAPRKQLAAKAARK 28
                 455566777777666655 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.6e-05
  TFIID-31kDa  22 eyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlA 66 
                   +++  v  L + a  y +s++ed ++ a hak+ +++ +d+ lA
   CDO69863.1  85 RFQSSAVMALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDLALA 129
                  688899999*********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1018.66
//
Query:       CDO69864.1  [L=545]
Description: hypothetical protein BN946_scf184884.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4127.07
//
Query:       CDO69865.1  [L=338]
Description: hypothetical protein BN946_scf184884.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-09   36.0   0.0    1.1e-08   35.3   0.0    1.4  1  SPRY      SPRY domain


Domain annotation for each model (and alignments):
>> SPRY  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.9e-13   1.1e-08       2     119 ..     149     292 ..     148     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.9e-13
                 EEEEEEETCCTSSEEEEEE.....................EETTSSSSSTSSS..TSSTTEEEEETETTEEE..EETESCEEEESSSS..TTSEEEEEE CS
        SPRY   2 hyfevkiqsaeggsisvGl.....................ateqtdlsdksge..gddrgswglcgdngtrt..saeqskaygkqpar..egdviGval 73 
                 +y+evki+ + +g + vG                      a ++++         g++r s gl+ d+ +++   +  + +y++   r  +gd+iG ++
  CDO69865.1 149 VYYEVKIL-RMDGLVAVGEfapgldfpynadaqsfpspgsACRPYP--HW--RlpGWNRLSAGLHLDDFRKFfeDPDGGRDYTPLLTRlsPGDTIGFGY 242
                 5*******.99********677777776666666666666666666..33..155***********9999999977777777773332449******** PP

                 ETTTTEEEEEETTEEEEEEEESTTTS....SEEEEEEE.STCEEEEESSE CS
        SPRY  74 DleegelsFtkngknlgvaFrnvrga....elfPvvslgngaslkinlgl 119
                  +  g+++Ft ng  l  aF+ v        ++ ++ ++  + l++n+g+
  CDO69865.1 243 AFALGTVFFTRNGARLPDAFTGVYLPrpqhDVYAAIGVEGACELEVNFGG 292
                 ***********************9877788******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2613.61
//
Query:       CDO69866.1  [L=926]
Description: hypothetical protein BN946_scf184884.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-92  308.9   0.0      6e-92  308.5   0.0    1.1  1  GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
     0.0051   16.9   6.8      0.011   15.9   6.8    1.4  1  bZIP_1     bZIP transcription factor
  ------ inclusion threshold ------
        0.1   12.7   7.7       0.22   11.6   7.7    1.5  1  bZIP_2     Basic region leucine zipper
       0.19   11.1   0.0       0.29   10.5   0.0    1.2  1  Ppx-GppA   Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.5   0.0   1.3e-95     6e-92       9     420 ..     498     926 .]     495     926 .] 0.90

  Alignments for each domain:
  == domain 1  score: 308.5 bits;  conditional E-value: 1.3e-95
   GDA1_CD39   9 kygiviDAGSsgsrlhvykwkdekesllqivklieevkklePGlSsfekkpeeaaeylkpllelaeeviPeekrsetpvlikATAGlRLlkeekkekil 107
                 +++++iDAGS+gsr+h+yk+   +++   ++ + e +k+ +PGlS +e+ p++aa++l++ll+ a +v+P + +++tpv +kATAGlR l  +k+ +i+
  CDO69866.1 498 QFALMIDAGSTGSRIHIYKF---NNCGPSPQYEYEVFKQRQPGLSFYEDSPSAAAQSLDELLDEALRVVPPSLQKCTPVQVKATAGLRKLGPQKSANII 593
                 79******************...45555555555559************************************************************** PP

   GDA1_CD39 108 kalrnklkklsefkved.qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepq.eeseiaekvedieelklqekledk 204
                  a+r++++++++f  +  + + ++dG+ EG+Y+Wi++NYll  +  ++   ++ +  +vlDlGGaStQi+fep+ + s+  ++ e++ e+k ++++ ++
  CDO69866.1 594 AAVRAHIEQKYPFSLHGdDAVAVMDGRDEGVYSWITVNYLLDTIRSSS--PKDAQPYAVLDLGGASTQIVFEPTfDMSKPDSTLEEG-EHKYDLNFGGH 689
                 *************998769**************************995..6678889*****************99999999*****.6********** PP

   GDA1_CD39 205 kyklyvtsfLgyGanealrkklaklikkasee.........vlkdpClprglektvevkdle.....fkqfaikgtgnyeqCrksikellnknakCkae 289
                 k+ ly++s+LgyG+ ea++   +k ++  s+          ++ +pCl +g+e+ vev+d         +++ ++ g++e C++ ++ ++ k++ C+ +
  CDO69866.1 690 KHVLYQHSYLGYGLMEARK-SVHKVVEFMSSVlgkphgkdaTVANPCLAKGTERRVEVQDNRlgekwNVTMVGQDVGSFEGCNRVVELVMAKDSVCEVK 787
                 **************99976.556777777766777899999*******************9988887778899************************** PP

   GDA1_CD39 290 eClfngvfapsidl..lqklfgaseyfYtvsdvlklggek.....vklekltealrkfCk..knweeikaeskkskeksiseeeaCfkgayvlslLhdG 379
                 +C+fngv++ps      ++++   +yfY+  + + ++  +     ++   +++ ++++C+    w e     +   ++ +   e+C++++++ +lL  G
  CDO69866.1 788 PCSFNGVYQPSLLEtfPHGKVLLLSYFYDRLSPFVSATVNpvtppIRISAFADLAKTVCEgpAAWRERWGADAALMKELEGRPEYCLDLTFMHALLRLG 886
                 ***********6433578899999****86665554444446667***************88889997766665555555555**************** PP

   GDA1_CD39 380 fdldktveelqsvekiaekelgWtLGamlnllkalklkkkl 420
                 +++  + +e+++ ++i++ elgW+LGa + ++   +lk+++
  CDO69866.1 887 YEFSGD-REVEIGKQIDGTELGWALGATISMVTGAELKCRV 926
                 ******.*************************999999875 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   6.8   2.4e-06     0.011      13      50 ..     225     262 ..     221     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  13 NReaArrsRqRKqaeieeLerrvkaLekeNksLksele 50 
                 N  aArrsR+RK +++ eLe  v+  ++e ++ k ++ 
  CDO69866.1 225 NTLAARRSRKRKLEYQRELELSVEREKEEKEMWKRRAA 262
                 889******************99998888887777665 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.7     5e-05      0.22      12      42 ..     225     255 ..     223     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
                 XXXXXXX-HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  12 NreAarrsRekkkakeeeleervkeLeeeNa 42 
                 N+ AarrsR++k ++++ele  v++ +ee++
  CDO69866.1 225 NTLAARRSRKRKLEYQRELELSVEREKEEKE 255
                 9*********************999988876 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.5e-05      0.29      88     139 ..     614     673 ..     568     675 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.5e-05
                 EEEE-HHHHHHHHHHHH.......HHHT.---SSEEEEEEETTEEEEEEEETTEEEEEEE CS
    Ppx-GppA  88 veiisgeeEarliylgv.......vssl.lekgrglviDiGGGStElvlgeekevsklvS 139
                 v +++g +E+ ++   v       +ss  + +++  v+D+GG+St++v+   +++sk+ S
  CDO69866.1 614 VAVMDGRDEGVYSWITVnylldtiRSSSpKDAQPYAVLDLGGASTQIVFEPTFDMSKPDS 673
                 556666666666555442222221455557789999************998888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 6363.43
//
Query:       CDO69867.1  [L=606]
Description: hypothetical protein BN946_scf184884.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-30  106.5   0.0    1.8e-30  105.8   0.0    1.4  1  RhoGAP       RhoGAP domain
      2e-28   99.2   0.7    2.3e-27   95.8   0.3    2.2  2  CRAL_TRIO_2  Divergent CRAL/TRIO domain
    8.6e-05   22.3   0.1    0.00016   21.4   0.1    1.4  1  CRAL_TRIO    CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0     3e-34   1.8e-30       1     148 [.     222     372 ..     222     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 3e-34
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHH...HHTSSSHHHHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelie...aaksedeeerleal 96 
                 P +v++c++++++ gl+ eg++R s ++  +k+  +a+d+g+ v+   +  d+h  a lLK++L +lpep+++++ly+ + +    ++  ++   +  +
  CDO69867.1 222 PRVVKDCIQYLRSTGLQDEGLFRRSPNSVMLKQAAQAYDRGHVVS-LETFGDPHLAAVLLKKYLHDLPEPVFPERLYPLIRRcppPTSDPNDMSSILYI 319
                 99******************************************8.99999******************************746633445555556666 PP

                 HHHHT.TS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TS CS
      RhoGAP  97 kelle.kLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpks 148
                 +e+l  +LP++ + +L ++l++L++v+ +s+ n+M+a+nL +v+ P+L+++++
  CDO69867.1 320 RETLLpELPPCFYILLSSVLHLLHEVQLRSAANRMDAHNLTVVICPNLVSSSN 372
                 665555******************************************99865 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.3   3.9e-31   2.3e-27      21     136 ..      81     186 ..      66     188 .. 0.90
   2 ?    1.4   0.0     0.055   3.3e+02       3      55 ..     315     375 ..     313     449 .. 0.75

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 3.9e-31
  CRAL_TRIO_2  21 kllryvlhtladkivgkeyvlVyfhtglssenkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyvsrleeLark 118
                  ++l y    l d +v+++y++V+ + g  + ++p+++w++k+y++l+r+y+knlk+ly+vh+++f+k+l+ ++  a+ s+kf +k++y+++l+eLa +
   CDO69867.1  81 RVLSY----L-DLYVESDYTVVFLAAG--NRHTPGWNWVWKAYRSLSRKYRKNLKRLYVVHSNFFTKMLF-SLAGAIISPKFFRKITYINTLSELAYH 170
                  44444....5.667899**********..67***************************************.9999999******************** PP

  CRAL_TRIO_2 119 idrtqllkslPegvvshd 136
                  + +tq+  ++P +v++ +
   CDO69867.1 171 VPLTQI--DIPPAVYQEN 186
                  ******..***9999865 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.055
  CRAL_TRIO_2   3 pVfvfiaafl.......lsskadldkllryvlhtladkivgke.yvlVyfhtglssenkps 55 
                  ++++++ + l        +   +  +ll  v+ + a + +++   ++V++ + +ss n ++
   CDO69867.1 315 SILYIRETLLpelppcfYILLSSVLHLLHEVQLRSAANRMDAHnLTVVICPNLVSSSNPMR 375
                  566666666644433331223477788888888877775554459*****99999966655 PP

>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.7e-08   0.00016      92     152 ..     119     176 ..     106     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.7e-08
   CRAL_TRIO  92 lqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeql 152
                 l++ y + l+++++v++ ++ k++f+l+ +++++k+ +Ki+++++    ++l  +++  q+
  CDO69867.1 119 LSRKYRKNLKRLYVVHSNFFTKMLFSLAGAIISPKFFRKITYINT---LSELAYHVPLTQI 176
                 677899*************************************44...6789999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4304.72
//
Query:       CDO69868.1  [L=233]
Description: hypothetical protein BN946_scf184884.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-25   88.1   0.0    6.1e-25   87.8   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    3.8e-24   85.2   0.0    9.4e-24   83.9   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    5.8e-24   84.6   0.0    1.1e-23   83.8   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.1e-16   60.9   0.0    1.4e-16   60.6   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    5.2e-16   59.2   0.0    7.5e-16   58.7   0.0    1.2  1  Methyltransf_12  Methyltransferase domain
    1.7e-10   41.0   0.0    2.4e-10   40.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    3.4e-08   33.3   0.0    4.7e-08   32.9   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
    8.9e-07   28.5   0.0    1.4e-06   27.9   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
    1.8e-06   26.9   0.0    2.7e-06   26.2   0.0    1.3  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    3.7e-05   23.3   0.0    5.6e-05   22.8   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00029   20.7   0.0    0.00039   20.2   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0014   17.8   0.0     0.0019   17.3   0.0    1.2  1  DREV             DREV methyltransferase
     0.0018   17.6   0.1     0.0024   17.2   0.1    1.1  1  Methyltransf_2   O-methyltransferase domain
     0.0055   15.8   0.0     0.0071   15.4   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.057   13.1   0.0    1.8  2  Catalase_C       C-terminal domain found in long catalases
      0.026   13.8   0.0      0.034   13.4   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.033   13.8   0.0       0.05   13.2   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.041   13.5   0.0      0.055   13.1   0.0    1.2  1  NodS             Nodulation protein S (NodS)


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   6.1e-28   6.1e-25       5     132 ..       1     131 [.       1     155 [. 0.86

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 6.1e-28
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDi.seeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                      +++lD+GCG G++t  +a ++ ++++v+G++  + +++ +Ar+na+  g++n++F +gd+ +l+  + d +fD++++++vl+++ dp++ l+e+
       CDO69868.1   1 MTLLDIGCGPGTITADFA-QILSEGHVTGLEVpNSDVLDKARANAAARGVTNITFIEGDALALP--FPDHSFDVVHAHQVLQHVGDPAQMLKEM 91 
                      689***************.9999********96789****************************..**************************** PP

  Methyltransf_31  98 ervlkpggilliedpr..llaelp..akveeeskay.evv 132
                       rv kp+gi+ +++++  +la++p  + + +++k+y +v+
       CDO69868.1  92 YRVTKPDGIVGTREADmsALAWYPevEGLDDWRKNYlKVA 131
                      ***************9555555558888888888775333 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   9.4e-27   9.4e-24       1      94 [.       4     101 ..       4     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 9.4e-27
                      EEET-TTSHHHHHHHHTT..SEEEEEES.-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDl.skemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+GcG G +++++a+    ++v+g+++ +  +l+ a+++a  +g+ +++f+++da  lpf+d+sfD+v +++vl+hv dp++ lke++Rv kp
       CDO69868.1   4 LDIGCGPGTITADFAQILseGHVTGLEVpNSDVLDKARANAAARGVtNITFIEGDALALPFPDHSFDVVHAHQVLQHVGDPAQMLKEMYRVTKP 97 
                      8**************877899******72455669999999999999*********************************************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      +G++
       CDO69868.1  98 DGIV 101
                      **85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   1.1e-26   1.1e-23       2      97 .]       4      99 ..       3      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.1e-26
                     EEET-TTSHHHHHHHCTSTSSEEEEEES.SHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25  2 LdlGcGtGrltlalakrlgkakvtgvDi.seemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95
                     Ld+GcG+G++t+++a+ l++++vtg+++ +++ l++ar++a+++g+ n++f++gda +lpf+d+sfD+v++ ++l+h+ d   +++lke++rv+kp
       CDO69868.1  4 LDIGCGPGTITADFAQILSEGHVTGLEVpNSDVLDKARANAAARGVtNITFIEGDALALPFPDHSFDVVHAHQVLQHVGD--PAQMLKEMYRVTKP 97
                     9****************999*******868999**************************************877***995..569*********** PP

                     EE CS
  Methyltransf_25 96 gG 97
                     +G
       CDO69868.1 98 DG 99
                     *9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.4e-19   1.4e-16      50     153 ..       2     105 ..       1     130 [. 0.92

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.4e-19
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES.-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDi.nenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      ++lD+ +G g +++++++ + ++g+v++l++ n+++L+ +++ +  +g++ni f+ ++a +Lpf d sfDvv     l+ v D  + Lke+yrv
       CDO69868.1   2 TLLDIGCGPGTITADFAQ-ILSEGHVTGLEVpNSDVLDKARANAAARGVTNITFIEGDALALPFPDHSFDVVHAHQVLQHVGDPAQMLKEMYRV 94 
                      689*************97.56789*****996889*********************************************************** PP

                      EEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvle 153
                       kp G++   e
       CDO69868.1  95 TKPDGIVGTRE 105
                      *****997665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   7.5e-19   7.5e-16       1      98 [.       4     100 ..       4     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 7.5e-19
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai.edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+iGcG G++++ +++ l++ ++tg+++  s + ++a++  a+r+  n +++e +al l   d  +sfD+v+a++vl+h+ d++++l++++++ 
       CDO69868.1   4 LDIGCGPGTITADFAQILSEGHVTGLEVPNSDVlDKARANAAARGVTNITFIEGDALALPFPD--HSFDVVHAHQVLQHVGDPAQMLKEMYRVT 95 
                      8**************************977666588888888888888888888888876544..6**************************** PP

  Methyltransf_12  94 kpgGr 98 
                      kp+G+
       CDO69868.1  96 KPDGI 100
                      ****7 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.4e-13   2.4e-10      25     133 ..       2     123 ..       1     158 [. 0.61

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.4e-13
  Methyltransf_23  25 rvLdiGcGtGillevlre.......ngfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqia 106
                       +LdiGcG G+ +  +++        g +v + D  ++a + a+     +     +   d+   ++p+ +fd++++ +vl hv dp+  l+ ++
       CDO69868.1   2 TLLDIGCGPGTITADFAQilseghvTGLEVPNSDVLDKARANAAargvtN---ITFIEGDALALPFPDHSFDVVHAHQVLQHVGDPAQMLKEMY 92 
                      58********6555555522223322335555555444444333443322...2222222236666999************************* PP

  Methyltransf_23 107 tllkpgGylllseplasl...........kedrllldw 133
                      + +kp+G +  +e + s+                   w
       CDO69868.1  93 RVTKPDGIVGTREADMSAlawypevegldD-------W 123
                      ********9999987776677654443332.......2 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.7e-11   4.7e-08      17     103 ..       3      96 ..       1     103 [. 0.72

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.7e-11
        MetW  17 vldlGcGdGellellke.ekqvdgrGleldeegv.....aecvakGlsviqgdldkdle.nfedksfdyvvlsqtlqatrnpkevldellrigr 103
                 +ld+GcG G++   +++   + +  Gle+ ++ v     a++ a+G++ i     + l+  f+d+sfd+v   q lq + +p+++l+e+ r+++
  CDO69868.1   3 LLDIGCGPGTITADFAQiLSEGHVTGLEVPNSDVldkarANAAARGVTNITFIEGDALAlPFPDHSFDVVHAHQVLQHVGDPAQMLKEMYRVTK 96 
                 79*******98654333123344556666655552222267899**987765444445416*******************************87 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.4e-09   1.4e-06       4      74 ..       2      70 ..       1      81 [. 0.87

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.4e-09
                    EEEEET-TTSHHHHHHHHHSTTSEEEEEES.-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEE CS
  Methyltransf_4  4 vvleiGcGkGeflvalAkknPdknflGiEi.rvkvvakvlkkiealelkNlrilrgdalkvllelledgsle 74
                    ++l+iGcG G+++ + A+   +  + G+E+ +++v++k+ ++++a++++N+  ++gda   l   ++d+s++
      CDO69868.1  2 TLLDIGCGPGTITADFAQILSEGHVTGLEVpNSDVLDKARANAAARGVTNITFIEGDA---LALPFPDHSFD 70
                    579***************************4467899*********************...44456666665 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.7e-09   2.7e-06     120     214 ..       2     100 ..       1     110 [. 0.88

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.7e-09
  Methyltransf_29 120 tvlDvGCg....vasfgayllsrdvltlslapkDeheaqvqfaLeRgvpailavlgtk.rlpyPsrsfdlihCsrCridwteedgilllevdRv 208
                      t lD+GCg     a f+ +l + +v+ l +   D+ ++    a  Rgv  i  + g    lp+P +sfd++h  +  +++  + + +l e+ Rv
       CDO69868.1   2 TLLDIGCGpgtiTADFAQILSEGHVTGLEVPNSDVLDKARANAAARGVTNITFIEGDAlALPFPDHSFDVVHAHQV-LQHVGDPAQMLKEMYRV 94 
                      689****9666558899999999***************999********99999886537************8775.577788999******** PP

  Methyltransf_29 209 lRpgGy 214
                       +p+G 
       CDO69868.1  95 TKPDGI 100
                      ****95 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.6e-08   5.6e-05      35     101 ..       3      72 ..       1      76 [. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.6e-08
                 EEEET-TTSHHHHHHHHHTTC.EEEEEES.BHHHHHHHHHHHHHTTGC.EEEEE-STTT.TSTTS-EEEE CS
         MTS  35 vlDlGcGaGvlgaalakespeaevtlvdv.darAlesakenleankle.vevvasdvle.eveekkfdli 101
                 +lD+GcG G ++a +a+  +e +vt ++v +   l+ a++n++a ++  +++++ d+l+  +++++fd++
  CDO69868.1   3 LLDIGCGPGTITADFAQILSEGHVTGLEVpNSDVLDKARANAAARGVTnITFIEGDALAlPFPDHSFDVV 72 
                 79**************************8678899************99*******99834568999987 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     4e-07   0.00039      75     134 ..       1      60 [.       1      90 [. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4e-07
                 -EEEEES-TTSHHHHHHHHHHCTTCEEEEEES.BHHHHHHHHHHHHHCTTCSEEEEES-GG CS
        PCMT  75 arvLevGsGsGyltavlarlvgekgrvvsier.ikelveeakrnlkkldlenvivvvgDGr 134
                 +  L++G+G G  ta +a+++ e g+v ++e    ++ ++a++n  + +++n+++++gD  
  CDO69868.1   1 MTLLDIGCGPGTITADFAQILSE-GHVTGLEVpNSDVLDKARANAAARGVTNITFIEGDAL 60 
                 578****************9975.67*****8346799*********************75 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.9e-06    0.0019      97     184 ..       2     101 ..       1     134 [. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
        DREV  97 klldlGaGdGeitkrvaptfee.......vyatelsetmrdrlkkkkynvlsale.....lqetdvkldlilclnlldrcfdplklledirsalepngr 183
                 +lld+G G G it   a+ ++e       v   ++  + r +   ++   ++ +e     l   d  +d++ +  +l    dp ++l++++ + +p+g 
  CDO69868.1   2 TLLDIGCGPGTITADFAQILSEghvtgleVPNSDVLDKARANAAARGVTNITFIEgdalaLPFPDHSFDVVHAHQVLQHVGDPAQMLKEMYRVTKPDGI 100
                 79********************555555555555555555555566666677666333112235789***************************99885 PP

        DREV 184 v 184
                 v
  CDO69868.1 101 V 101
                 5 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.4e-06    0.0024      65     162 ..       2     101 ..       1     112 [. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.4e-06
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE-H..HHHHHHHHHS-----TTEEEEES-TTTS---..--SEEEEESSGGGS-HHHHHHHHHHHHHH CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfDlp..eVveaAkehlsageeervefvgGdffkdslP..eaDaillkrvlhDwsdekcvklLkrvkka 155
                     +l+D+G G G + +  ++   + +v+ +++p  +V  +A+    a   ++++f++Gd    + P  + D++   +vl    d   +++Lk++++ 
      CDO69868.1   2 TLLDIGCGPGTITADFAQILSEGHVTGLEVPnsDVLDKARANAAARGVTNITFIEGDALALPFPdhSFDVVHAHQVLQHVGD--PAQMLKEMYRV 94 
                     699***************************9445********999999***********89999766799999999987665..5799******9 PP

                     --TT-EE CS
  Methyltransf_2 156 lpagGkv 162
                      +++G v
      CDO69868.1  95 TKPDGIV 101
                     9999976 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.2e-06    0.0071      32     108 ..       1      82 [.       1      86 [. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
                 SEEEEES-TTTCCHHHHHCC-..SEEEEE-S.-HHHHHHHHCHTT..TCCCEEEE-S-CCGHHHHHHHCTTTCCCCEEEEEE CS
      RrnaAD  32 ltvleigpGkGilTeeLakra..kqvvvlEl.derLakllqkkls..kdeklkvvhqDflkfetpeevtekdsihqeflvva 108
                 +t+l+ig G+G  T+ +a+++   +v+ lE   ++ +   +++      ++++ ++ D+l   +p    +  + hq +  v+
  CDO69868.1   1 MTLLDIGCGPGTITADFAQILseGHVTGLEVpNSDVLDKARANAAarGVTNITFIEGDALALPFPDHSFDVVHAHQVLQHVG 82 
                 689******************99999****7345666666554445599*****************9999999999887776 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.7e-05     0.057      77     116 ..      73     112 ..      38     120 .. 0.84
   2 ?   -1.6   0.0       1.9   1.9e+03     111     130 ..     185     204 ..     177     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.7e-05
  Catalase_C  77 taasslfpagrplqllldayrhgKpigalGsgaealkaag 116
                  a++ l+  g+p+q+l+++yr  Kp g++G+ ++ ++a+ 
  CDO69868.1  73 HAHQVLQHVGDPAQMLKEMYRVTKPDGIVGTREADMSALA 112
                 678899999**********************988777665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
  Catalase_C 111 alkaagisaeepGVyvadsa 130
                 + +++  sa + GVy+++  
  CDO69868.1 185 VSSNFASSAIRHGVYTQEGL 204
                 55566666678999998755 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.4e-05     0.034      64     162 ..       1     101 [.       1     128 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
                 -EEEEES-TTSHHHHHHHHHH.--EEEEEES-H.HHHHHHHHHHHTS-SSS-EEEEES-GG.G---.--SEEEEES-GGGTSGGGHHHHHHHHHHHS-T CS
        CMAS  64 mtlLdiGcGWGslvrravery.dvkvvglTlSk.eqaklakkrvdeldlerkvevklldye.dlde.kvdrvvsvgafehvgkenydtffkklkkllke 158
                 mtlLdiGcG G+++   ++   + +v gl + + +   +a+++ +++++++ + ++       +++  +d v + ++++hvg    ++  k++++++k+
  CDO69868.1   1 MTLLDIGCGPGTITADFAQILsEGHVTGLEVPNsDVLDKARANAAARGVTNITFIEGDALAlPFPDhSFDVVHAHQVLQHVGDP--AQMLKEMYRVTKP 97 
                 89**********9998777542789****9976145678888899999888887776554424555699999999999999976..5789999999999 PP

                 T-EE CS
        CMAS 159 dGll 162
                 dG++
  CDO69868.1  98 DGIV 101
                 9987 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     5e-05      0.05      11      70 ..       2      61 ..       1      73 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-05
                     EEEESS-TTSHHHHHHHHHTTTTSEEEEEES.SCCCHHHHHHHHHHTT--SEEEEES-CTC CS
  Methyltr_RsmB-F 11 tilDlcaaPGgKTthiaelmknkgtvvAvda.nkeRlkrvaenlkrLgvtntivleaDark 70
                     t+lD+ ++PG  T+  a++  ++g+v+ +++ n+  l++  +n    gvtn++ +e+Da  
       CDO69868.1  2 TLLDIGCGPGTITADFAQI-LSEGHVTGLEVpNSDVLDKARANAAARGVTNITFIEGDALA 61
                     68*****************.67899999996377899********************9865 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.5e-05     0.055      47     126 ..       3      88 ..       1     107 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.5e-05
        NodS  47 alevGcaaGalterlapyck..rltvvdvveeai...ararervkesshiswivsdvqqfs.tdekfdlivvaevlyyiedvaelr 126
                  l++Gc  G++t  +a +    ++t ++v ++ +   ara+   + +++i++i+ d   +   d+ fd++   +vl +++d a++ 
  CDO69868.1   3 LLDIGCGPGTITADFAQILSegHVTGLEVPNSDVldkARANAAARGVTNITFIEGDALALPfPDHSFDVVHAHQVLQHVGDPAQML 88 
                 599***********9987551356777776544322234455667889********9999636899***************99984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1766.38
//
Query:       CDO69869.1  [L=905]
Description: hypothetical protein BN946_scf184884.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-44  152.9  31.4    1.1e-44  152.9  31.4    2.1  2  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9  31.4   5.9e-49   1.1e-44       6     289 ..      52     354 ..      47     363 .. 0.87
   2 !    2.9   1.8    0.0021        38     333     374 ..     367     408 ..     360     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 5.9e-49
                     HHHHHHHH..H.HHHTTSXHHHHHHHHHHHHTTTTTS.................HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHH CS
  Na_H_Exchanger   6 llallvgl..l.arrlklpeivgliiaGlllGpsglg.......lieps.....eedlevlselglilllFlaGleldlrelrknlksilllall 85 
                     +++l++ l  l +r++++p ++++++ G+llGp  +g                    l++++++gl+l+lFl+Gle+d + ++kn + ++ +al+
      CDO69869.1  52 VIILTTQLlsLvLRKIRQPKVIAEVLGGILLGPTAFGripgftkH---IfpddsRPYLSLVANIGLCLFLFLVGLEIDAAVIKKNARLSVTVALA 143
                     334444444433*************************66664441...16666999*************************************** PP

                     HHHHHHHHHHHHHH.H.....HT.XTTCHHHHHHH.HHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTS CS
  Na_H_Exchanger  86 gvlitvvliGlllyll.....li.lgiplleallf.gailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeagge 173
                     g+ +++ l G +l+ +     +i + + +++ +lf g++ s+t ++v+ +il+e++++++ +g+++l+++v nD+v++ lla+ +al+  +ag +
      CDO69869.1 144 GMCLPFGL-GAALS-VplyhtFIdPSVKFTNFMLFtGVAYSITAFPVLCRILTELKLLDTTVGIVVLSAGVGNDIVGWTLLALSVALV--NAGSG 234
                     ********.99999.558999888999**99876626666************************************************..77777 PP

                     SSTSXHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHHHHHHHH CS
  Na_H_Exchanger 174 tsllllllifl.vvavgglllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklseklesfre 266
                      ++l++l+i + + +++++++++++ wl+r++  + d+   +++ +++ll++++a++++++gv++i+gaflaG++++ e++++  l+ekle + +
      CDO69869.1 235 LTALWILMICVgWTLFLLFVVKRILHWLARRTGSTRDGPTMFFMTVTMLLLFGSAFFTDIIGVHAIFGAFLAGIIVPrEGGLAITLTEKLEDLVS 329
                     77777777765166778899***************99999999**************************************************** PP

                     HHHHHHHHHHHHHHSXHHHHHX..X CS
  Na_H_Exchanger 267 glfnplfFvlvGlsldlkvlnn..h 289
                      +f+pl+F ++Gls++l +l+n  +
      CDO69869.1 330 IVFLPLYFTISGLSTNLGLLDNgkS 354
                     *****************99986432 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0021
                     S.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHH CS
  Na_H_Exchanger 333 lqrgavalalaalgpalgllarelyallivvvlftvlvqGls 374
                     + rg v l+++++g a+g+l++ +++++++ +l+ ++  +  
      CDO69869.1 367 SYRGLVELIVLNVGLAAGILSQRVFSMFVLEALLLTFMTTPA 408
                     569*********************999999999999944433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 5602.78
//
Query:       CDO69870.1  [L=543]
Description: hypothetical protein BN946_scf184884.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-85  286.6   0.0    1.3e-85  286.6   0.0    1.8  2  Nop          snoRNA binding domain, fibrillarin
    2.8e-19   69.3   0.2    2.8e-19   69.3   0.2    2.5  2  NOP5NT       NOP5NT (NUC127) domain
  ------ inclusion threshold ------
        0.2   11.6  27.7       0.26   11.2  27.7    1.1  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te
        5.9    7.1   6.3         24    5.1   0.2    3.6  3  Clp_N        Clp amino terminal domain, pathogenicity island 


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.6   0.0   2.8e-89   1.3e-85       1     229 [.     174     407 ..     174     408 .. 0.93
   2 ?   -5.2   3.5         4   1.8e+04      44      62 ..     491     509 ..     462     538 .. 0.52

  Alignments for each domain:
  == domain 1  score: 286.6 bits;  conditional E-value: 2.8e-89
                 HHHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT..........HHHHHHHHHHHHCHHHH-SSS-S-HHHHHHHHH CS
         Nop   1 lldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkee.........deelakevimaakvtastsmgaelseedlknike 90 
                 lld++dk++n +++r+rewY++hFpEL ++v+dn++Ya+v+++ig  +e+l++++          d + a+++++aa+     smg+ lse d+ n+  
  CDO69870.1 174 LLDQLDKDVNLFSMRIREWYGYHFPELVKIVPDNYQYARVAQFIG-AKESLTEEKLpelaallddDTTRAQNILDAARG----SMGVALSEFDIMNVGM 267
                 689******************************************.778886663355666665333366777777777....**************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCC CS
         Nop  91 lcdrvleleelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppkl 188
                 +++rv++l+e+rk+l+ Yl+++m+ +AP l+aL+G++++arLishaG+LtnL+k+Past+qilGaekalfralk k+ntpkyGliyhs+++++a  pk+
  CDO69870.1 268 FATRVVSLAEYRKSLQAYLHEKMNDVAPSLTALLGDRIGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKtKGNTPKYGLIYHSSFIGRA-APKV 365
                 **************************************************************************777***************88.99** PP

                 HHHHHHHHHHHHHHHHHHHHTT---.-SHHHHHHHHHHHHHH CS
         Nop 189 kkkiaRllaaKvalaaRiDafsekd.gslGkklreeiekklk 229
                 k++i+R+la+K+++aaRiD+++e++ +++G+ lr+++e++l+
  CDO69870.1 366 KGRISRFLANKCSIAARIDCYTEHPtAKFGEVLRQQVEERLN 407
                 *******************9999889**************96 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 4
                 CCCCHCCT.HHTT.HHHHH CS
         Nop  44 igneredlekkeedeelak 62 
                  ++e++ l+k++++e+++k
  CDO69870.1 491 SKEEKKALKKEKKKERKEK 509
                 3333333322222222222 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.2   6.3e-23   2.8e-19       1      64 [.       4      68 ..       4      69 .. 0.92
   2 ?   -5.6   4.3         4   1.8e+04      25      45 ..     470     492 ..     459     508 .. 0.60

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 6.3e-23
      NOP5NT  1 fiLfEtaaGYaLfkvkdkkllkkdd.lvkdsvsdlekfsklvkLkaFqkFesaaeALenanaise 64
                + LfEt++GYa+f+vk +  +++ d  v+ s++d+ kf k+v+L++F++F++aa+ALen+n+ise
  CDO69870.1  4 HALFETSSGYAIFEVKLHDVVGALDkAVQSSIDDYPKFAKMVSLVSFAPFQNAAHALENMNDISE 68
                56**************99666666668*************************************9 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 4
      NOP5NT  25 d...lvkdsvsdlekfsklvkLka 45 
                 +    v++  s++e  +k vkL +
  CDO69870.1 470 EagmDVDE-SSEEEAPKKKVKLSK 492
                 24544555.555566677777765 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  27.7   5.9e-05      0.26      89     232 ..     392     540 ..     368     543 .] 0.41

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
                  ..HHHHHHHHHHHHXXXXXXXX.X........XXX..XXXXXXXXXX.....XX.XX....................XX.....XXXXX...XXXXXX CS
  SRP-alpha_N  89 y.FdeyFdqllrelEasaeaak.kskaakepkamksfeeskkskktvksskedkkpe.........gkkkkgakkekda.....sddstpsatpetsr 170
                  + F e+ +q+++e  +  e  +  sk+a + +++ +  + ++++  ++ ++ dk++e           kk+++kk+k++               e+s+
   CDO69870.1 392 AkFGEVLRQQVEERLNFFETGEpPSKNADAMRKALEALALEEDEDHDDGMQVDKDGEpalpliepsP-KKDKKKKRKSDeagmdV--------DESSE 480
                  3588999988876544444332033333333333333444555566666777766645677776542.22222222222122221........22333 PP

                  XXXXXX.XXXXX.XXX.XXXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXX..XXXXXX CS
  SRP-alpha_N 171 pstpsg.lltakeagptaedvsrrarkkankkrssagassgdeakasksskkkkkkpkkkgkk 232
                  ++ p++  + +ke++++ ++ ++++rk+++   +++g +s++e+k++k++k kk+k++kk+kk
   CDO69870.1 481 EEAPKKkVKLSKEEKKALKKEKKKERKEKE---AAEGGESKKERKEKKEKKDKKEKKEKKEKK 540
                  333322122222222223333333333332...222233333333222222222222233333 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.031   1.4e+02      22      44 ..      94     115 ..      92     124 .. 0.79
   2 ?    5.1   0.2    0.0054        24      19      38 ..     231     250 ..     231     260 .. 0.90
   3 ?   -0.3   0.1      0.26   1.2e+03      20      38 ..     298     314 ..     297     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.031
                 HHHSCTSHHHHHHHHTTSSHHHH CS
       Clp_N  22 LleeddGlaarlLkkaGvdldal 44 
                 L++++ G+a ++ k++G+ +++ 
  CDO69870.1  94 LAANP-GIAVSIAKELGIAIADK 115
                 66788.9***********99876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0054
                 HHHHHHSCTSHHHHHHHHTT CS
       Clp_N  19 LlALleeddGlaarlLkkaG 38 
                 L ALl++d+  a+++L +a 
  CDO69870.1 231 LAALLDDDTTRAQNILDAAR 250
                 89**************9985 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.26
                 HHHHHSCTSHHHHHHHHTT CS
       Clp_N  20 lALleeddGlaarlLkkaG 38 
                  ALl +  +++arl+  aG
  CDO69870.1 298 TALLGD--RIGARLISHAG 314
                 588865..5******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2420  (0.134977); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                       272  (0.015171); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.50
# Mc/sec: 3277.27
//
Query:       CDO69871.1  [L=325]
Description: hypothetical protein BN946_scf184884.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.23   11.0   0.0       0.35   10.4   0.0    1.2  1  Cytochrome-c551  Photosystem P840 reaction-centre cytochrome 


Domain annotation for each model (and alignments):
>> Cytochrome-c551  Photosystem P840 reaction-centre cytochrome c-551
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     2e-05      0.35     107     165 ..     213     275 ..     199     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2e-05
                      XXXXXXXXXXXXXXXXXX...XXXXXX-SS----TT--HHHHHHHHHHHTTSSS-.SHHHHHH CS
  Cytochrome-c551 107 ttvdGkyirtvreldafl...ekpaaaedvlvapaGedlaaakklvdrrcnkcha.lkavedk 165
                       + +G+ ir+ +  +a+    +++ + e+ +   +G ++a  ++ ++rrc++ h  + +ve +
       CDO69871.1 213 KAKHGDVIRCRDVYEAIYkslDRVMSPEELVRYRTGRNFARCEEAFERRCQRIHRgVPSVERA 275
                      56678888887777776544488889999999999******************9536777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2071.59
//
Query:       CDO69872.1  [L=850]
Description: hypothetical protein BN946_scf184884.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-10   41.1  11.3    2.3e-07   31.1   1.9    3.4  3  zf-RING_2     Ring finger domain
    1.3e-07   31.8   9.6    9.6e-07   29.0   0.3    3.1  2  zf-rbx1       RING-H2 zinc finger domain
    3.6e-06   26.6   7.7     0.0004   20.1   0.5    3.3  3  zf-RING_11    RING-like zinc finger
    6.7e-05   22.8   0.8    6.7e-05   22.8   0.8    3.0  3  zf-RING_UBOX  RING-type zinc-finger
    0.00014   21.7   5.4      0.002   18.0   0.3    3.1  3  zf-RING_5     zinc-RING finger domain
    0.00017   21.2   0.4    0.00017   21.2   0.4    2.7  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
    0.00035   20.4   2.2    0.00035   20.4   2.2    3.8  4  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00037   20.3   0.4    0.00037   20.3   0.4    3.1  3  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0014   18.6   4.7     0.0022   18.0   0.1    2.7  2  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0047   16.8   4.2       0.02   14.7   0.3    2.9  3  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.4   0.6      0.012   15.4   0.6    2.7  3  Prok-RING_4   Prokaryotic RING finger family 4
       0.19   11.9   0.7         11    6.2   0.3    2.6  2  Zf_RING       KIAA1045 RING finger
       0.77    9.9   3.6       0.26   11.4   0.4    1.8  1  RINGv         RING-variant domain
        1.4    9.1   5.9        2.7    8.2   0.2    2.9  2  FANCL_C       FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.18   2.3e+02       2      12 ..     386     396 ..     385     399 .. 0.80
   2 !   31.1   1.9   1.8e-10   2.3e-07      15      44 .]     466     497 ..     459     497 .. 0.85
   3 !   12.7   0.3   9.5e-05      0.12      19      44 .]     788     832 ..     776     832 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.18
   zf-RING_2   2 eCpICleelss 12 
                 +C++C+e+l +
  CDO69872.1 386 TCAVCWESLLE 396
                 7*****99865 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 1.8e-10
   zf-RING_2  15 svlllpCgHvfhreClerwlrssst..CPlCr 44 
                 ++++lpC+Hvfh +Cl  w+ +  +  CP Cr
  CDO69872.1 466 KIVVLPCSHVFHASCLLPWFSKPGRttCPSCR 497
                 57788**************87777779****9 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 9.5e-05
   zf-RING_2  19 lpCgHvfhreCl......erwlrssst.............CPlCr 44 
                   C H fh +Cl      + w r+ ++             CP+Cr
  CDO69872.1 788 AICEHKFHPSCLvsaervAGWGREDKKedhedvaedvevsCPVCR 832
                 24**********99988866755555567778999999******9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.3   7.5e-10   9.6e-07      25      55 .]     465     497 ..     444     497 .. 0.80
   2 ?    4.5   3.9     0.034        43      30      43 ..     788     801 ..     773     832 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 7.5e-10
     zf-rbx1  25 cpvvlGeCgHaFHlhCiskWlkt..rkvCPlcr 55 
                  ++v+  C+H+FH  C+  W+++  r++CP cr
  CDO69872.1 465 PKIVVLPCSHVFHASCLLPWFSKpgRTTCPSCR 497
                 4556669*************************8 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
     zf-rbx1  30 GeCgHaFHlhCisk 43 
                   C+H+FH  C+ +
  CDO69872.1 788 AICEHKFHPSCLVS 801
                 46*********865 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.55   7.1e+02       2       9 ..     387     394 ..     387     398 .. 0.86
   2 !   20.1   0.5   3.1e-07    0.0004      14      29 .]     466     481 ..     461     481 .. 0.90
   3 !    8.8   0.1     0.001       1.3      13      29 .]     783     799 ..     776     799 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.55
  zf-RING_11   2 CsICLeef 9  
                 C++C e++
  CDO69872.1 387 CAVCWESL 394
                 *****986 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3.1e-07
  zf-RING_11  14 alfilpCsHtFHfkCI 29 
                 ++++lpCsH+FH  C+
  CDO69872.1 466 KIVVLPCSHVFHASCL 481
                 689************5 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.001
  zf-RING_11  13 qalfilpCsHtFHfkCI 29 
                  +++ + C H FH  C+
  CDO69872.1 783 ASRREAICEHKFHPSCL 799
                 5667778*********5 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.3   5.5e+03       1       9 [.     387     395 ..     387     397 .. 0.79
   2 !   22.8   0.8   5.2e-08   6.7e-05      10      39 .]     464     494 ..     451     494 .. 0.83
   3 ?    3.2   0.0     0.073        94      16      39 .]     790     829 ..     773     829 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.3
  zf-RING_UBOX   1 CpIClelft 9  
                   C +C e++ 
    CDO69872.1 387 CAVCWESLL 395
                   99**99875 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 5.2e-08
  zf-RING_UBOX  10 dP.lv.lpCGHtFCreClwelskslegafkCP 39 
                    P +v lpC+H+F+ +Cl   ++s+ g+ +CP
    CDO69872.1 464 YPkIVvLPCSHVFHASCL-LPWFSKPGRTTCP 494
                   4774537***********.677*********9 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.073
  zf-RING_UBOX  16 CGHtFCreCl........w........elskslegafkCP 39 
                   C H F+ +Cl        w         ++  ++ +++CP
    CDO69872.1 790 CEHKFHPSCLvsaervagWgredkkedHEDVAEDVEVSCP 829
                   **********988777764555555566666666666666 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4   1.7e+03       2      10 ..     387     396 ..     386     402 .. 0.73
   2 !   18.0   0.3   1.6e-06     0.002      14      43 ..     466     497 ..     457     498 .. 0.89
   3 ?    4.4   0.3     0.029        37      20      43 ..     790     832 ..     787     833 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
   zf-RING_5   2 CnkCfekl.s 10 
                 C +C+e+l +
  CDO69872.1 387 CAVCWESLlE 396
                 99***99854 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.6e-06
   zf-RING_5  14 kfyltsCgHifCekClkkll..ekeavCpiCr 43 
                 k+++++C+H+f+ +Cl   +    + +Cp Cr
  CDO69872.1 466 KIVVLPCSHVFHASCLLPWFskPGRTTCPSCR 497
                 689***************99988999*****8 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.029
   zf-RING_5  20 CgHifCekClkkll...................ekeavCpiCr 43 
                 C H f+ +Cl  +                      e+ Cp+Cr
  CDO69872.1 790 CEHKFHPSCLVSAErvagwgredkkedhedvaeDVEVSCPVCR 832
                 8999999999888889999999999999999888899*****8 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.4   1.3e-07   0.00017      22      47 ..     470     495 ..     464     497 .. 0.90
   2 ?    1.4   0.1      0.19   2.4e+02      23      34 ..     789     800 ..     787     812 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.3e-07
  Zn_ribbon_17  22 gvCeHvlHasCarewfenddlaeCps 47 
                     C Hv HasC+  wf++   + Cps
    CDO69872.1 470 LPCSHVFHASCLLPWFSKPGRTTCPS 495
                   56******************9****8 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.19
  Zn_ribbon_17  23 vCeHvlHasCar 34 
                    CeH  H sC+ 
    CDO69872.1 789 ICEHKFHPSCLV 800
                   6*********86 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.45   5.8e+02       2      12 ..     387     397 ..     386     398 .. 0.78
   2 !   20.4   2.2   2.7e-07   0.00035      14      40 .]     468     496 ..     463     496 .. 0.89
   3 ?    5.5   0.1     0.012        15      17      28 ..     789     800 ..     781     804 .. 0.84
   4 ?   -0.9   0.2       1.2   1.5e+03      36      40 .]     827     831 ..     822     832 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.45
  zf-C3HC4_2   2 CpiCldmlkdp 12 
                 C++C ++l +p
  CDO69872.1 387 CAVCWESLLEP 397
                 99999988766 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.7e-07
  zf-C3HC4_2  14 vvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 vv pC Hvf+++C+l++ ++     CP C
  CDO69872.1 468 VVLPCSHVFHASCLLPWFSKPGrtTCPSC 496
                 678***************9977679***9 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.012
  zf-C3HC4_2  17 pCgHvfCqkCil 28 
                  C+H+f+ +C+ 
  CDO69872.1 789 ICEHKFHPSCLV 800
                 6*********86 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.2
  zf-C3HC4_2  36 eCPlC 40 
                 +CP+C
  CDO69872.1 827 SCPVC 831
                 78888 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       6.5   8.3e+03       1       7 [.     387     393 ..     386     397 .. 0.62
   2 !   20.3   0.4   2.9e-07   0.00037      13      41 .]     468     496 ..     452     496 .. 0.86
   3 ?    3.7   2.1     0.044        57      16      41 .]     789     831 ..     779     831 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.5
                 -TTT-S- CS
    zf-C3HC4   1 CpiClee 7  
                 C++C e 
  CDO69872.1 387 CAVCWES 393
                 6777654 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.9e-07
                 .E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  13 elleCkHsfCskCirkilksrkkvkCPlC 41 
                  +l+C H f+ +C++ + ++ + ++CP C
  CDO69872.1 468 VVLPCSHVFHASCLLPWFSKPGRTTCPSC 496
                 479****************988899**** PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.044
                 TTS--B-CHHHHHHHHC.................TSSB--TTT CS
    zf-C3HC4  16 eCkHsfCskCirkilks.................rkkvkCPlC 41 
                  C+H+f+ +C+++  +                  + +v+CP+C
  CDO69872.1 789 ICEHKFHPSCLVSAERVagwgredkkedhedvaeDVEVSCPVC 831
                 5**********98766555666666666555555555556666 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.7e-06    0.0022      47      79 ..     467     498 ..     455     502 .. 0.86
   2 ?    0.4   1.3      0.52   6.7e+02      52      62 ..     790     800 ..     784     838 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-06
                 EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  47 lvlGkckhnfhlhcilkwletetskglcpmcrq 79 
                 +v+  c+h+fh+ c+l w++++  +  cp cr 
  CDO69872.1 467 IVVLPCSHVFHASCLLPWFSKPG-RTTCPSCRF 498
                 77788**************9875.789****96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.52
                 TS-EEEHHHHH CS
  zf-ANAPC11  52 ckhnfhlhcil 62 
                 c+h+fh  c++
  CDO69872.1 790 CEHKFHPSCLV 800
                 99999999986 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.3   1.7e+03      25      33 ..     386     394 ..     383     399 .. 0.66
   2 !   14.7   0.3   1.6e-05      0.02      12      48 ..     464     501 ..     461     502 .. 0.89
   3 ?    1.7   0.1      0.18   2.3e+02      39      45 ..     827     833 ..     818     834 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
                 E-HHHHHHH CS
  zf-C3HC4_3  25 lCeeCaekl 33 
                 +C  C+e+l
  CDO69872.1 386 TCAVCWESL 394
                 466666655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.6e-05
                 BS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B-- CS
  zf-C3HC4_3  12 prnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrpie 48 
                   ++v+lpC H+ +  +C+  + +   +++Cp Cr +i+
  CDO69872.1 464 YPKIVVLPCSHV-FHASCLLPWFSkpGRTTCPSCRFDID 501
                 56799*******.*********999**********8875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.18
                 B-TTT-- CS
  zf-C3HC4_3  39 kCpiCrr 45 
                 +Cp+Cr+
  CDO69872.1 827 SCPVCRA 833
                 7****96 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3       8.8   1.1e+04      21      27 ..     387     393 ..     386     394 .. 0.76
   2 ?   15.4   0.6   9.6e-06     0.012      10      43 ..     466     503 ..     460     506 .. 0.86
   3 ?    2.5   0.0       0.1   1.3e+02      30      37 ..     824     832 ..     816     835 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.8
  Prok-RING_4  21 CkeCfds 27 
                  C  C++s
   CDO69872.1 387 CAVCWES 393
                  8889875 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.6e-06
  Prok-RING_4  10 kailepCgHlvCkeCfdskdls....sCPlCqrrisks 43 
                  k+++ pC H++  +C+  + ++    +CP C+  i+++
   CDO69872.1 466 KIVVLPCSHVFHASCLLPWFSKpgrtTCPSCRFDIDPD 503
                  7899************9996666788******999876 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.1
  Prok-RING_4  30 ls.sCPlCq 37 
                   + sCP+C+
   CDO69872.1 824 VEvSCPVCR 832
                  4468****8 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.09   1.2e+02      25      35 ..     472     482 ..     455     488 .. 0.82
   2 ?    6.2   0.3    0.0087        11      24      67 ..     789     835 ..     781     838 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.09
     Zf_RING  25 CtkvfHegClr 35 
                 C++vfH +Cl 
  CDO69872.1 472 CSHVFHASCLL 482
                 *********95 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0087
     Zf_RING  24 vCtkvfHegClrklgyl...qdesalellkrAktetGWsCaeCdnln 67 
                 +C++ fH +Cl + + +     e+++e  +    ++  sC  C  ++
  CDO69872.1 789 ICEHKFHPSCLVSAERVagwGREDKKEDHEDVAEDVEVSCPVCRAVG 835
                 9**********765554111557777778888888999999998776 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4    0.0002      0.26      25      48 .]     474     496 ..     468     496 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                 CSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  25 klvHesClekWldekeantqCeiC 48 
                 +++H sCl  W+++    t+C  C
  CDO69872.1 474 HVFHASCLLPWFSK-PGRTTCPSC 496
                 689***********.9999**999 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0021       2.7      28      43 ..     472     487 ..     465     500 .. 0.89
   2 ?    1.8   1.4      0.21   2.7e+02      25      38 ..     787     800 ..     779     834 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0021
                 ----B-SGGGHHHHHH CS
     FANCL_C  28 CnkkfHsaCLkeWlrs 43 
                 C++ fH++CL  W+ +
  CDO69872.1 472 CSHVFHASCLLPWFSK 487
                 9************975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.21
                 -TT----B-SGGGH CS
     FANCL_C  25 nekCnkkfHsaCLk 38 
                 ++ C +kfH +CL+
  CDO69872.1 787 EAICEHKFHPSCLV 800
                 677*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.52
# Mc/sec: 4891.36
//
Query:       CDO69873.1  [L=409]
Description: hypothetical protein BN946_scf184884.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-86  288.2  10.1    1.2e-85  287.6  10.1    1.2  1  PSS       Phosphatidyl serine synthase
  ------ inclusion threshold ------
       0.11   12.7   2.6       0.13   12.5   0.4    2.1  2  TctB      Tripartite tricarboxylate transporter TctB family


Domain annotation for each model (and alignments):
>> PSS  Phosphatidyl serine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.6  10.1   1.4e-89   1.2e-85       1     210 [.     194     393 ..     194     396 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.6 bits;  conditional E-value: 1.4e-89
         PSS   1 PhpavWrvvlglsvlYllllvfllfqdledarqllklldpelgkklpeksyaedCsllslenvlekldvfvlaHflGwlvkalilRdllllwilsilfE 99 
                 Phpa+Wrvvlg+++lY+l++vfllfqdl++ar+++k+ldp+lgk+lpeksyae+C+l +len+++++d+f+laH+lGw++kalilRd++++wilsi+fE
  CDO69873.1 194 PHPAFWRVVLGINLLYELAMVFLLFQDLDSARSMMKYLDPNLGKPLPEKSYAENCEL-TLENLWNAIDIFCLAHALGWFGKALILRDYWFCWILSIAFE 291
                 9*******************************************************9.***************************************** PP

         PSS 100 llElslqhllpnFaECWWDhlilDvllcNllGivlGllllkllelkeYkWegikkikslkkklkrvlkqftpaswteyeWkktkslkrflavllllvvv 198
                 ++E+slqh+l+nFaECWWDh+ilDvl+cN+lG +lG+++++++e+k+   +gi      ++k+krv++qf+p++wt+++W+ t+s+ ++++v+lll+v+
  CDO69873.1 292 FAEYSLQHQLANFAECWWDHWILDVLICNWLGTYLGMKTCQYFEVKT---RGI------RSKTKRVISQFSPHDWTTFKWEGTASFGHYFTVVLLLAVF 381
                 *********************************************97...444......489************************************* PP

         PSS 199 llleLnvFflka 210
                 l++eLn F+lk+
  CDO69873.1 382 LAAELNPFYLKV 393
                 **********95 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.5e-05      0.13      53     127 ..     125     219 ..     117     221 .. 0.75
   2 ?   -1.2   0.1      0.26   2.3e+03      73      83 ..     372     382 ..     348     397 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
        TctB  53 ekeekearedwrkllklvlallaalllyalllepl..........Gfilata.lflllll..g.......reerkwlkalilavvlall.vyllFt 127
                 e+++++ +++ ++   + l++ +a+l+y+++ + +          G + a+a + ll+ +  +        +   w+++l++ ++  l+ v+llF+
  CDO69873.1 125 EQNDTSVEFFYKPITLTALGVGMAVLAYVAMTQDVlkegeekkriGVYAAIAsF-LLFSMiqFrdgpfvrPHPAFWRVVLGINLLYELAmVFLLFQ 219
                 567777788889999999************888855666666666**9999953.43444363456778866677999999999998885677886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.26
        TctB  73 llaalllyall 83 
                 + ++lll ++l
  CDO69873.1 372 FTVVLLLAVFL 382
                 22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2807.65
//
Query:       CDO69874.1  [L=375]
Description: hypothetical protein BN946_scf184884.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.2    9.2   5.5       0.38   10.7   0.6    2.4  2  zf-LYAR   LYAR-type C2HC zinc finger


Domain annotation for each model (and alignments):
>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4     0.054   9.7e+02       2       8 ..      47      53 ..      47      54 .. 0.86
   2 ?   10.7   0.6   2.1e-05      0.38      10      23 ..     235     248 ..     231     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.054
     zf-LYAR  2 sCiDCsk 8 
                sC+ C++
  CDO69874.1 47 SCLNCHT 53
                8****97 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 2.1e-05
     zf-LYAR  10 FdgdeykaHtsCIt 23 
                 ++ ++y +H+sC+t
  CDO69874.1 235 YQEQQYVQHCSCVT 248
                 5669*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.50
# Mc/sec: 2276.95
//
Query:       CDO69875.1  [L=309]
Description: hypothetical protein BN946_scf184884.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-51  173.7   0.0      9e-51  173.4   0.0    1.1  1  TANGO2    Transport and Golgi organisation 2


Domain annotation for each model (and alignments):
>> TANGO2  Transport and Golgi organisation 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   0.0     5e-55     9e-51       1     252 [.       1     279 [.       1     280 [. 0.80

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 5e-55
      TANGO2   1 MCIllftveahpkykLiLasNRDEflaRptkeaaww..eens.........eilsgrDlerkegGTWlGitkegrlAvLtNlrepsekekkakkarsRG 88 
                 MC+ +++  +hp+y LiL+sNRDEflaRpt++a+w+     +         ++lsgrDl +  gGTW Gi++ gr+A LtN++ep++k      ++sRG
  CDO69875.1   1 MCVGFWS-LTHPEYALILCSNRDEFLARPTAPAHWHsfG--PisavddeqgTVLSGRDLLA--GGTWAGINRAGRIALLTNITEPTRKY-----ESSRG 89 
                 *******.79*************************9551..33344444559********6..**********************9444.....68*** PP

      TANGO2  89 elvldfLtsseksseeyleelak......eakkyggFnLlvgdlk.......skelayisnrs.....keeeelsp........gvhglSNsll...ds 158
                  l+++fL   +k+++++le+ ++      + + y gFnLl+++         s + a+++n +     +                + g+SN       +
  CDO69875.1  90 DLTSSFLL--PKQPKATLETEIDefvlenRGRAYAGFNLLLLSPApsdsgtlSLDGAFATNSGgsgqiT------ArmltmderHCGGISNGIDhhgAN 180
                 *******4..5555555554444466678999***********99999888855677777877554431......123445667999****65545655 PP

      TANGO2 159 pwpKveegkkkleelveesveekseeelieellellsddtllpkdeeleeleellssifippie.e........akkeYGTrtqtvilvdkegkvtfiE 248
                 +wpKv++g + l+e+++   ++++e e++e+l++ll+ ++ +++   + + +el+++i ++p+  +          ++YGTr +tvil++++g   fiE
  CDO69875.1 181 EWPKVKHGIQTLNEVLHSLPQDATEAEIVERLFALLTWKSEHAP---I-DRSELRNTILVDPLLiQskessddpCPNYYGTRLSTVILIRRNGAALFIE 275
                 9******************9999999**********99996333...2.4567788888776654245678888778********************** PP

      TANGO2 249 rtle 252
                 r ++
  CDO69875.1 276 RDIW 279
                 *875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 1827.21
//
Query:       CDO69876.1  [L=205]
Description: hypothetical protein BN946_scf184884.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-36  126.5   0.0    2.2e-35  122.1   0.0    1.9  1  Actin     Actin
  ------ inclusion threshold ------
        0.1   12.8   1.1        4.2    7.6   0.5    2.5  2  Usg       Usg-like family
       0.11   12.2   0.0       0.14   11.8   0.0    1.1  1  CCDC85    CCDC85 family


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   3.6e-39   2.2e-35      89     289 ..       5     204 ..       2     205 .] 0.94

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 3.6e-39
       Actin  89 kvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks........tglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaL 179
                 +v+++e +ll+tep +n p+ +   ++ vfE+++++a+y+++ + l  + + ++        + lv+DsG s t+vvp+++G v+  a++r d+gGk L
  CDO69876.1   5 QVNTSEASLLITEPYFNLPNIQDVYDQFVFEEYDFQAYYRCT-PSLIPYGHLLAqpglprpqCLLVIDSGFSFTHVVPIMNGAVVWSAVKRIDVGGKLL 102
                 8999***********************************985.8899999999999******************************************* PP

       Actin 180 teqlkellssknvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss.....sspeksYeLPDg...... 267
                 t++lke++s +                                +++ +ee+++++e+Ke++c+vsed+++d e+ +     +++ ++Y++PD       
  CDO69876.1 103 TNHLKEVISFR--------------------------------QWNLMEETHIVNEVKEACCFVSEDFARDLEACRgqpddNPIVQEYIFPDYsskrpg 169
                 **********8................................9*************************9444444455559999************** PP

       Actin 268 .............seiklgeeRfkvpEiLFdpsli 289
                              +++++++eRf+vpEiLF+p +i
  CDO69876.1 170 rirrpgepldvscQTLIMNNERFTVPEILFHPADI 204
                 ***********999******************987 PP

>> Usg  Usg-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.5   0.00071       4.2       9      37 ..      15      43 ..       9      52 .. 0.83
   2 ?    3.0   0.0     0.019   1.1e+02      16      32 ..     148     164 ..     142     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00071
         Usg  9 taeilYrlPDhpsllqsyvwqdyDlaPef 37
                 +e  ++lP+ + + +++v+ +yD +  +
  CDO69876.1 15 ITEPYFNLPNIQDVYDQFVFEEYDFQAYY 43
                5566799*****************98766 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.019
         Usg  16 lPDhpsllqsyvwqdyD 32 
                  PD + ++q y++ dy 
  CDO69876.1 148 QPDDNPIVQEYIFPDYS 164
                 5999*********9995 PP

>> CCDC85  CCDC85 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.14      47      85 ..     100     139 ..      86     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
      CCDC85  47 rrLqqhLleiRelkevnqkLqedn...qelrdlCCfLdddRq 85 
                 + L +hL+e+ ++++ n  L+e+    +e+++ CCf+ +d  
  CDO69876.1 100 KLLTNHLKEVISFRQWN--LMEEThivNEVKEACCFVSEDFA 139
                 55899**********99..6666522379********99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1232.62
//
Query:       CDO69877.1  [L=275]
Description: hypothetical protein BN946_scf184884.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1636.55
//
Query:       CDO69878.1  [L=311]
Description: hypothetical protein BN946_scf184884.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-51  171.5   1.3    6.6e-51  171.5   1.3    1.6  2  Kin17_mid    Domain of Kin17 curved DNA-binding protein
    0.00032   21.0   5.8    0.00071   19.9   5.8    1.6  1  zf-met       Zinc-finger of C2H2 type
      0.003   17.8   5.0     0.0059   16.9   5.0    1.5  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
       0.26   11.6   3.8       0.13   12.6   1.0    1.8  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> Kin17_mid  Domain of Kin17 curved DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   1.3   1.5e-54   6.6e-51       1     126 []      52     177 ..      52     177 .. 0.99
   2 ?   -2.7   0.6       1.2   5.2e+03     102     120 ..     285     303 ..     262     309 .. 0.51

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 1.5e-54
   Kin17_mid   1 rqleliaentkkvieeyskeFekdFlklLrtrhgekkveankvYqeyiqdkdHvhmNaTkwtsLteFvkyLgkegkvkveetekgllisyidrspeale 99 
                 rq+++++e++ k+i+++s +F++dF++lL++r+g+k+v+an+vYqe+iqd++H+hmNaT+w +LteFvk+Lg++g+ +v+etekg++i++id+sp+al+
  CDO69878.1  52 RQMLVVGESAGKHIADFSAQFQHDFVQLLSRRFGTKRVKANTVYQEFIQDRNHLHMNATRWVTLTEFVKHLGRTGVARVDETEKGWFIAWIDNSPKALA 150
                 89************************************************************************************************* PP

   Kin17_mid 100 rkeklekkekaekedeereekllekqi 126
                 ++e++ kke+++ +de+re++l+e+qi
  CDO69878.1 151 KQEASMKKERMTVSDEQRERMLIEEQI 177
                 **************************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
   Kin17_mid 102 eklekkekaekedeereek 120
                 + +++ e+   e++er+++
  CDO69878.1 285 APMTAAERLIYEEQERKRR 303
                 3333334444444444444 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   5.8   1.6e-07   0.00071       1      25 []      26      50 ..      26      50 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.6e-07
      zf-met  1 fyCelCnvtfnsesqlksHlqGKkH 25
                +yC +C +++ +e+ +k+H q+  H
  CDO69878.1 26 WYCQICEKQCRDENGFKCHTQSESH 50
                9********************9777 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   5.0   1.3e-06    0.0059       2      26 ..      26      50 ..      25      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSKkH 26
                 +YC++C+K++ +en ++ H  S +H
   CDO69878.1 26 WYCQICEKQCRDENGFKCHTQSESH 50
                 8*********************999 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.0   2.9e-05      0.13      50      80 ..      25      55 ..       7      75 .. 0.74
   2 ?   -1.7   0.1      0.82   3.7e+03      65      91 ..      94     117 ..      86     124 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
   zf-C2H2_2 50 kleClyCekefkslealreHmkkkgHckine 80
                ++ C +Cek++++ + ++ H ++++H + + 
  CDO69878.1 25 RWYCQICEKQCRDENGFKCHTQSESHLRQML 55
                789***********************98766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.82
   zf-C2H2_2  65 alreHmkkkgHckineeeeeekkeiek 91 
                  ++e +++++H  +n +   ++ ++ +
  CDO69878.1  94 VYQEFIQDRNHLHMNAT---RWVTLTE 117
                 46677777888777653...3444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1459  (0.0813765); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 1740.70
//
Query:       CDO69879.1  [L=714]
Description: hypothetical protein BN946_scf184884.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-25   86.2   0.3    1.6e-24   85.5   0.3    1.4  1  DASH_Ask1  DASH complex subunit Ask1


Domain annotation for each model (and alignments):
>> DASH_Ask1  DASH complex subunit Ask1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.3   8.9e-29   1.6e-24       1      63 [.      39     101 ..      39     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 8.9e-29
   DASH_Ask1   1 leqldqeitltLqeIDanlsrcfriitkkilPavkrYgeasekiwesakfwksffeqsAnveL 63 
                 +eq++q it++Lq+IDan+s++++++ ++ilPav+rY+  +++++e+akfw++f+eq+A++++
  CDO69879.1  39 IEQIEQLITIKLQNIDANFSKIQHVMANRILPAVRRYAVGTQPVREAAKFWTTFYEQAAQIRI 101
                 7************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.55
# Mc/sec: 3921.62
//
Query:       CDO69880.1  [L=288]
Description: hypothetical protein BN946_scf184884.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-20   73.6   0.0    2.9e-20   72.7   0.0    1.5  1  DUF2407      DUF2407 ubiquitin-like domain
      9e-18   64.8   8.2    1.9e-15   57.3   8.2    3.1  1  DUF2407_C    DUF2407 C-terminal domain
    4.3e-07   29.6   0.0    7.5e-07   28.8   0.0    1.3  1  ubiquitin    Ubiquitin family
  ------ inclusion threshold ------
      0.021   14.9   0.0       0.22   11.7   0.0    2.5  2  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
        0.1   12.4   0.0       0.13   12.1   0.0    1.3  1  VIT1         VIT family


Domain annotation for each model (and alignments):
>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   8.2e-24   2.9e-20       3     103 ..      31     125 ..      29     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 8.2e-24
     DUF2407   3 lviRFsasipDleLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpeesvsdkaekskekgkapvreqeeeriYihCsi 101
                 l+iRF++ ipDl++++   ++ tv  +kq iR+ l +el++rrLrLI+aG+lL+d+t+l   +   e+++++ a +  + ++ap+   +++++++hCs+
  CDO69880.1  31 LTIRFTEGIPDLTVKVA--ESDTVRDVKQSIRNAL-PELKRRRLRLIHAGQLLSDNTPLYLRIASLEQQRRE-AVTFGDDEEAPAA--TSQTTWLHCSV 123
                 89**************9..899*************.9************************99999554333.4444445555554..78999****** PP

     DUF2407 102 Gd 103
                 G+
  CDO69880.1 124 GP 125
                 *7 PP

>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   8.2   5.3e-19   1.9e-15       1     138 [.     147     280 ..     147     282 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 5.3e-19
   DUF2407_C   1 iGFDRLlsaGfseeeieaLRsqFrsiygseetpdtmpsdleeeeeeelreLEerWidstanaeeaaeaeeegeaakeeensvdseeskanedlliGlli 99 
                 +GFDRL +aGfsee+i+++R qF++  + +   d++ +d +e+ +e+ r LEe+Wids             g+a         +++++a + l  G+++
  CDO69880.1 147 RGFDRLAAAGFSEEDIANIRLQFHTHSAGD-YLDQEFDD-QEDYDEHARMLEEQWIDSLDG---------GGNA---------AQSQTAVTSLHNGIVL 225
                 7***********************977744.45544555.67788*************992.........2222.........234567888999**** PP

   DUF2407_C 100 Gfflglfalllllkee................gllnkrqkmaviaGvlvnlvlgl 138
                 Gff++l+ ++++  ++                 +++++++m +++G+l+n+++gl
  CDO69880.1 226 GFFFPLIPFFFFRSNKpavfwqdgtehdmlnpPIFSRKMQMGIVVGFLLNVLFGL 280
                 ******986665433222222222223344445899*****************97 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.1e-10   7.5e-07      10      54 ..      41      86 ..      31      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.1e-10
                EEEEEEETTSBHHHHHHHHHHHH.TSSGGGEEEEETTEEE-TTSBH CS
   ubiquitin 10 kitleveesdtveelKekiaeke.gipaeqqrLiysGkvLedertl 54
                ++t++v+esdtv+++K+ i     ++ ++++rLi++G++L+d+ +l
  CDO69880.1 41 DLTVKVAESDTVRDVKQSIRNALpELKRRRLRLIHAGQLLSDNTPL 86
                689******************9989******************987 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.1e-05      0.22       7      66 ..      33      86 ..      29     145 .. 0.77
   2 ?   -0.3   0.0      0.32   1.2e+03       2      39 ..     164     201 ..     163     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.1e-05
                 EEETTS-EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBC CS
  Rad60-SLD_2  7 frlvdGsDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktl 66
                 +r+++G     vk  +++tv ++k+++ +  P+ k         l+li aG++L +n  l
   CDO69880.1 33 IRFTEGIPDLTVKVAESDTVRDVKQSIRNALPELKRR------RLRLIHAGQLLSDNTPL 86
                 67778877777889999************99998877......9***********99866 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.32
                  EEEEEEEETTS-EEEEEEEETT-BHHHHHHHHHHHS-T CS
  Rad60-SLD_2   2 aielkfrlvdGsDigpvkfsdaatvaelkekviaqWPk 39 
                  +i+l+f   +  D  + +f+d++  +e ++++ +qW +
   CDO69880.1 164 NIRLQFHTHSAGDYLDQEFDDQEDYDEHARMLEEQWID 201
                  68899988888889999999999999999999999933 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.7e-05      0.13     105     168 ..     179     246 ..      51     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
        VIT1 105 aellknpdalle.lmlreelgpsa...seelasplkaAlssa.lsfliGgliPllpylfvesvglalvv 168
                 ++ +++++  +e + + ee+ +++     + a   + A++s   + ++G ++Pl+p++f+ s++ a+++
  CDO69880.1 179 DQEFDDQEDYDEhARMLEEQWIDSldgGGN-AAQSQTAVTSLhNGIVLGFFFPLIPFFFFRSNKPAVFW 246
                 333333333333133333432333221222.33455666665158899999**********99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 1560.35
//
Query:       CDO69881.1  [L=1047]
Description: hypothetical protein BN946_scf184884.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-11   41.9   0.0    5.7e-09   35.8   0.0    3.2  3  IBN_N          Importin-beta N-terminal domain
    6.1e-06   26.1   0.5     0.0031   17.3   0.1    3.1  2  RIX1           rRNA processing/ribosome biogenesis
    0.00022   21.5   0.4       0.04   14.3   0.0    3.9  4  HEAT_2         HEAT repeats
     0.0017   18.5   0.1       0.02   15.1   0.1    2.9  2  RTP1_C1        Required for nuclear transport of RNA pol II C
  ------ inclusion threshold ------
      0.023   15.3   0.0        7.4    7.2   0.0    3.1  2  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
       0.03   14.4   1.4       0.71    9.9   0.0    3.8  4  Xpo1           Exportin 1-like protein
      0.036   13.8   0.0       0.13   12.0   0.0    1.9  2  MIF4G_like     MIF4G like
      0.038   14.5   0.3       0.68   10.5   0.0    3.4  3  HEAT_EZ        HEAT-like repeat
      0.093   13.0   0.2         62    4.3   0.1    4.0  3  HEAT           HEAT repeat
        0.8    9.0   6.4        1.6    8.0   6.4    1.4  1  BUD22          BUD22


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.2e-12   5.7e-09       1      73 [.      24     102 ..      24     103 .. 0.86
   2 ?   -2.6   0.0         3   5.4e+03      39      62 ..     117     138 ..     111     146 .. 0.65
   3 ?    2.3   0.0     0.091   1.6e+02      24      71 ..     520     576 ..     501     579 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.2e-12
                 HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGG.....SCCCHC.....GSXHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWs.....deeekq.....slpseekeqIrnnllnllg 73 
                 Ae  +++l  q+g + a lqi+ n++ ++++Rq+Aa+yLkn + +++      +          ++p +++++++ ++l ll+
  CDO69881.1  24 AELEIRKLGGQEGMVTATLQIIGNDSVDIPTRQAAAVYLKNRVYSSYFvdqvsT----SrpdqtPIPLSDRNNLKASILPLLA 102
                 677888888899*******************************99987544442....255568***************9997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
                 HHHHHHHHGGSCCCHC.GSXHHHHH CS
       IBN_N  39 LknlitkhWsdeeekq.slpseeke 62 
                 Lkn + + ++   e++ sl +++k+
  CDO69881.1 117 LKNVVARDFP---EHWpSLVEDVKK 138
                 7777777766...222256555554 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.091
                 CTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC.............GSXHHHHHHHHHHHHHH CS
       IBN_N  24 nseselevRqlAalyLknlitkhWsdeeekq.............slpseekeqIrnnllnl 71 
                 +   el+vR+ A l L+ ++t +  +++++              +l++e+  +I n + ++
  CDO69881.1 520 DP--ELPVRVHACLALTEMVTDS--PSVKNAvapqvgkviqtllKLSEETDLDILNHCMES 576
                 33..357***************9..788876666666666666666666666666666555 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.008        14      43      99 ..     129     192 ..      61     223 .. 0.56
   2 !   17.3   0.1   1.7e-06    0.0031      58     179 ..     480     598 ..     463     607 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.008
        RIX1  43 vhklvtrilsLlqskspegrwaGvcLakvtve.....esgeellssgstWlrallsiLekp..d 99 
                   +lv+ + +Ll s+++ ++ aG++ a  +v+     ++ ++l +   +++  l++i  +   +
  CDO69881.1 129 WPSLVEDVKKLLASSNVNEVHAGCVAALEMVRafrfrQNNDILPKLVDEFFPNLVNIATQAlsN 192
                 3456666777777777777777776666666555555555666555555555555555555442 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.7e-06
        RIX1  58 spegrwaGvcLakvtveesg.eellssgstWlrallsiLekpdppavlelaistlsriftltrgkptltREiltpnlpkfitallqlleee.letvlea 154
                 +p+ r  ++ ++++++ ++      +  ++ ++a+ + +  p + +v ++a+ +l+ + t   +    ++ ++ p+++k+i++ll+l+ee+ l+   ++
  CDO69881.1 480 EPYMRAIACEVLGTVIKAGFkFSNEQVLQQHFTAVAAAIDDP-ELPVRVHACLALTEMVTDSPS----VKNAVAPQVGKVIQTLLKLSEETdLDILNHC 573
                 577788888888888888875555666677888888888888.678899999999988765543....578999***************889******* PP

        RIX1 155 lstllplhPttfRpfankirsllls 179
                 + +++ ++ t + p+a+ + + l++
  CDO69881.1 574 MESMVETYQTELLPVAAELTARLCE 598
                 **************99999888776 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14   2.6e+02      32      85 ..       5      60 ..       2      63 .. 0.67
   2 ?   -1.3   0.0       1.6   2.9e+03       7      56 ..     100     157 ..      95     182 .. 0.53
   3 !   14.3   0.0   2.2e-05      0.04       8      62 ..     476     542 ..     469     579 .. 0.76
   4 ?   -3.9   0.1        10   1.8e+04      30      83 ..    1023    1045 ..    1016    1046 .. 0.49

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
      HEAT_2 32 alpaLvellededpavRraaaeaLgaigdpe..alpaLkellddddddvvReaAae 85
                +l  L+++  ++dp+v++ a   + ++g +e  + + L+ + +d  d  +R+aAa 
  CDO69881.1  5 TLTNLFSCTFSPDPNVQKRAELEIRKLGGQEgmVTATLQIIGNDSVDIPTRQAAAV 60
                56667777778888888888888888876554455666666666666677777765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
      HEAT_2   7 alendpdpevrraairaLg.....rignp....ealpaLvelleded.pavRraaaeaLg 56 
                 +l+++p+ ++  + + aL      ++  p    ++++ + +ll +++  +v +  + aL 
  CDO69881.1 100 LLASSPSRAITVQLAGALKnvvarDF--PehwpSLVEDVKKLLASSNvNEVHAGCVAALE 157
                 44455555555555555553332222..12222556666666644443556666666554 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2.2e-05
      HEAT_2   8 lendpdpevrraairaLg.......rignp....ealpaLvellededpavRraaaeaLgai..gdpe 62 
                   n p+p+ r+ a+++Lg       ++ n+    + + a+  +++d++  vR +a+ aL ++  ++p+
  CDO69881.1 476 F-NAPEPYMRAIACEVLGtvikagfKFSNEqvlqQHFTAVAAAIDDPELPVRVHACLALTEMvtDSPS 542
                 5.789*************99999887777734445588899999999999**********98543333 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 10
      HEAT_2   30 pealpaLvellededpavRraaaeaLgaigdpealpaLkellddddddvvReaA 83  
                  p+ + +L e++                               +  ++  v++aA
  CDO69881.1 1023 PDQQTLLMEVM-------------------------------RVAEEHSVQAAA 1045
                  44455555555...............................444444443332 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.1e-05      0.02       4      53 ..     514     563 ..     511     616 .. 0.76
   2 ?   -1.9   0.0         2   3.6e+03      60      83 ..     864     887 ..     863     922 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkded 53 
                 + + + dp+lpvr+h+ + L+++++++ + + + ++++ k++++ Lk ++
  CDO69881.1 514 VAAAIDDPELPVRVHACLALTEMVTDSPSVKNAVAPQVGKVIQTLLKLSE 563
                 66789**********************99988888888888888777444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
     RTP1_C1  60 aikgLvaLadvfpeevlklLleey 83 
                 +i +L+aL++++p++v + + e +
  CDO69881.1 864 SIMALCALMEIDPTNVPDSIKEGF 887
                 588999999999999988887777 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.043        77      23      57 ..     463     497 ..     439     502 .. 0.77
   2 ?    7.2   0.0    0.0041       7.4      22      84 ..     504     569 ..     498     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.043
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakv 57 
                    ++ + +++ vl  f+  +  +R  acE l  ++k+
     CDO69881.1 463 NMEQFLIQNVLPEFNAPEPYMRAIACEVLGTVIKA 497
                    3445689**********************999885 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0041
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEslyniak...vakgevlkllneifdalvklvaDsdesv 84 
                    +++l++  + v ++++D +  vR +ac +l  ++     +k++v  ++ ++ ++l kl+ ++d ++
     CDO69881.1 504 EQVLQQHFTAVAAAIDDPELPVRVHACLALTEMVTdspSVKNAVAPQVGKVIQTLLKLSEETDLDI 569
                    67888889999*******************9998622257899999*************9999887 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0004      0.71       3      47 ..     108     157 ..     106     216 .. 0.75
   2 ?   -3.3   0.0       4.8   8.6e+03      80      99 ..     306     327 ..     300     369 .. 0.66
   3 ?    0.0   0.0      0.44   7.9e+02      47      98 ..     528     581 ..     481     604 .. 0.75
   4 ?   -2.6   0.1       2.8   5.1e+03       4      37 ..     656     689 ..     654     727 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT......HHHHHHHHH CS
        Xpo1   3 flrnklaealaelflqeypnnWpsffddllsllsss.....psglelllr 47 
                 ++  +la al + + +++p++Wps+++d+ +ll ss      +g+ + l+
  CDO69881.1 108 AITVQLAGALKNVVARDFPEHWPSLVEDVKKLLASSnvnevHAGCVAALE 157
                 68889***********************9999988645555444444443 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.8
                 HHHHHHHHHHHHHHHHHCC..H CS
        Xpo1  80 vqkilelllqileqsqskk..q 99 
                 +++i++++l+ +e ++s++   
  CDO69881.1 306 APEIFKIYLHQIELYVSGHawL 327
                 6788888888888888776443 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHT..SHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        Xpo1  47 riLkvlpeEiad..fsrskleqerrndlkdllrsnvqkilelllqileqsqskk 98 
                   +++l e ++d   +++    +  + +++ll+ + ++ l++l +++e++++++
  CDO69881.1 528 HACLALTEMVTDspSVKNAVAPQVGKVIQTLLKLSEETDLDILNHCMESMVETY 581
                 557788888888765556666777888888888888888888888888888765 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT CS
        Xpo1   4 lrnklaealaelflqeypnnWpsffddllsllss 37 
                 ++ +l+e+++ +++    n++ +++d++ +l+ +
  CDO69881.1 656 ILAQLQEIIIPIVVFTLENKILDLLDNMYDLVDA 689
                 6778888888888888888888888777766654 PP

>> MIF4G_like  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.4   6.1e+03      11      55 ..     386     430 ..     384     441 .. 0.78
   2 ?   12.0   0.0   7.2e-05      0.13      83     134 ..     519     574 ..     476     580 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
  MIF4G_like  11 lrdilvdvinllevnrkeaakllldldlyltkktfalratsvdkl 55 
                 +r  ++d  + ++    +a+ +l+ l    tk+tf    + v+ +
  CDO69881.1 386 VRTTVADEFEAFDSPVSAATSFLFSLASNRTKTTFLPILAFVNGV 430
                 678888999999999999999999999999999998877776665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.2e-05
  MIF4G_like  83 ptpekklvyyhsl..lteicklaP...kavaPslGrairllyaalssldvelierfl 134
                  +pe  +v  h+   lte+++ +P   +avaP++G++i++l + +++ d+++++  +
  CDO69881.1 519 DDPEL-PVRVHAClaLTEMVTDSPsvkNAVAPQVGKVIQTLLKLSEETDLDILNHCM 574
                 44443.34444321379999999955558**********************998765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.5   4.5e+03      20      34 ..     169     183 ..     147     195 .. 0.54
   2 ?   10.5   0.0   0.00038      0.68       3      55 .]     483     536 ..     481     536 .. 0.91
   3 ?   -2.2   0.0       3.5   6.3e+03      14      39 ..     649     674 ..     637     675 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.5
     HEAT_EZ  20 ellqplvpeilpaLl 34 
                 + l++lv+e  p L+
  CDO69881.1 169 DILPKLVDEFFPNLV 183
                 234444444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00038
     HEAT_EZ   3 vRraAawaLGr.....laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                  R+ A+ +LG+       + + + lq++ +++ +a       d+  +VR  A+ aL+ +
  CDO69881.1 483 MRAIACEVLGTvikagFKFSNEQVLQQHFTAVAAAID-----DPElPVRVHACLALTEM 536
                 68999999****999*99**************99999.....999899********876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.5
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnd 39 
                 +    pe l++l++ i+p  + +L++
  CDO69881.1 649 AVDSSPEILAQLQEIIIPIVVFTLEN 674
                 45677888999999999988877765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.4   6.1e+03      10      21 ..     380     391 ..     377     395 .. 0.87
   2 ?    3.8   0.0      0.05        89       6      29 ..     473     496 ..     468     497 .. 0.81
   3 ?    4.3   0.1     0.035        62       6      28 ..     515     537 ..     511     540 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.4
                 T-SSHHHHHHHH CS
        HEAT  10 sDpspeVReaAa 21 
                 sDp  +VR ++a
  CDO69881.1 380 SDPIDFVRTTVA 391
                 89******9988 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.05
                 HHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgalae 29 
                 l   + p+p  R+ A++ Lg++++
  CDO69881.1 473 LPEFNAPEPYMRAIACEVLGTVIK 496
                 555799**************9875 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.035
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                   ++ Dp+  VR  A++aL++++
  CDO69881.1 515 AAAIDDPELPVRVHACLALTEMV 537
                 56789***************997 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.4   0.00091       1.6     156     232 ..     911     979 ..     872    1025 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00091
       BUD22 156 kkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydglla....sddedede 232
                  ++          +++++es+d++d    ++  + +e+eed  ded+   e  +++ +r  +++++++a    sdde+ede
  CDO69881.1 911 LEEA--------FHNESDESDDEDD----SKYLNMNEDEEDVWDEDSAYVEMLANEGQRLREKSEKVAAgedfSDDEEEDE 979
                 1111........1222333333333....2222222222222223333333444444555555555444566699999992 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 6506.92
//
Query:       CDO69882.1  [L=436]
Description: hypothetical protein BN946_scf184884.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-35  121.4   0.1    2.6e-33  115.1   0.0    2.6  2  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    1.3e-10   41.4   0.1    2.5e-10   40.5   0.1    1.4  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   2.9e-37   2.6e-33       1     170 [.     139     294 ..     139     296 .. 0.90
   2 ?   -3.1   0.0      0.58   5.2e+03       7      26 ..     364     383 ..     358     389 .. 0.65

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 2.9e-37
                     SS----.GCCC-EEEEESTCSSEEEEEHHHHHHC-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHT..TB-ETT.. CS
  Oxidored_molyb   1 hgavpkvdpekwrlevdglvekplslslddLkalpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLeka..gvkkpear 93 
                     hg vp++d++ ++le+ glv++ ++l+++dLk+  +  +  +  C+                      ++a ++Gv+l++vL+ a  g+  pea+
      CDO69882.1 139 HGGVPDIDEDAFKLEIGGLVNNAVKLTMKDLKDATKFPRGEREPCTI-------------------GQGTAVYRGVPLKKVLKIAcgGIL-PEAQ 213
                     899*****************************977666666667766...................357999**********99878996.**** PP

                     EEEEEEEEE-T...CCTEEEEEEEHHHHCTT.T-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---S CS
  Oxidored_molyb  94 hvvfegadeel...eeskygasiplekaled.dvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeeseg 170
                     h+ f gad+     +  +y+ s+p++k+ ++ +vlLA+emng+pLp+ hGyPlR+vv g++gars+Kw+ +i+   e+s g
      CDO69882.1 214 HLEFIGADTYFkkgNVFNYAVSVPWRKVRNNeEVLLAWEMNGKPLPKIHGYPLRVVVTGYIGARSAKWVYKINALAEPSMG 294
                     ********877888899************6658****************************************99988865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.58
                     .GCCC-EEEEESTCSSEEEE CS
  Oxidored_molyb   7 vdpekwrlevdglvekplsl 26 
                     v+p+ w+l+v+ ++++ + +
      CDO69882.1 364 VSPDGWDLHVTSSCHRIKVY 383
                     45778888887776665555 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   2.8e-14   2.5e-10       3      54 ..     320     368 ..     318     387 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.8e-14
                  ---S---EEEE-SS-SEEEE-S....EEEEEEEEEE-STT--EEEEEEESST CS
  Mo-co_dimer   3 aiydlnvnsvicspeheekvklkeaeetytikGyaysGgGrritrvevsldk 54 
                  +i++++v s+i++p+++++v ++   +++++kG++ysGgG  ++rvevs d+
   CDO69882.1 320 SIQNMPVSSAIIYPQDKQVVIHD---GHVELKGWSYSGGGNWVERVEVSPDG 368
                  699***************99986...5**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3071.17
//
Query:       CDO69883.1  [L=480]
Description: hypothetical protein BN946_scf184884.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-24   84.6   0.2    7.6e-24   83.7   0.2    1.5  1  TAF            TATA box binding protein associated factor (TA
    2.5e-15   56.6   0.1    5.2e-15   55.5   0.1    1.5  1  TAF6_C         TAF6 C-terminal HEAT repeat domain
    2.6e-06   27.8   0.3    5.4e-06   26.8   0.3    1.5  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
       0.04   13.9   0.0       0.09   12.8   0.0    1.5  1  Bromo_TP       Bromodomain associated
      0.055   13.8   0.0       0.12   12.7   0.0    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
      0.091   12.8   0.1       0.21   11.7   0.1    1.5  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
       0.16   12.4   0.1       0.33   11.3   0.1    1.5  1  CENP-S         CENP-S protein
       0.28    8.2   0.0       0.33    8.0   0.0    1.1  1  Nup192         Nuclear pore complex scaffold, nucleoporins 18


Domain annotation for each model (and alignments):
>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.2   3.4e-27   7.6e-24       4      66 .]      19      81 ..      17      81 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 3.4e-27
                --HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  4 lpkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                   +sv+++Aesl itnL d +a +La dveyr++++v+eaa+fmrh+kR++Lt+ D+d+ALr
  CDO69883.1 19 YKTDSVRDVAESLNITNLPDIVASALASDVEYRIQQVVEEAARFMRHAKRTTLTTGDIDQALR 81
                5679**********************************************************9 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   2.3e-18   5.2e-15      17      87 ..     326     396 ..     306     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2.3e-18
      TAF6_C  17 edhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyGallglaalGeeavrklvlp 87 
                 +  ++LR  AA++L+++l++ys++y+ L++r+++tl   l+ + ks +t  Ga++gl+ +G+eavr+ ++ 
  CDO69883.1 326 SHAVQLRTTAAQILSHLLTHYSTTYPGLSSRIVKTLIVGLIGEAKSRSTREGAIRGLMGIGKEAVRQGLVK 396
                 4459**************************************************************98876 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3   2.4e-09   5.4e-06      90     130 ..      42      82 ..      38      83 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.4e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHH CS
     Histone  90 lalqealEallvelfeeAnllakhaKRvTitpkDiqlArrl 130
                  al++ +E+ + ++ eeA++ ++haKR T+t  Di  A+r 
  CDO69883.1  42 SALASDVEYRIQQVVEEAARFMRHAKRTTLTTGDIDQALRV 82 
                 689999********************************995 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     4e-05      0.09      40      73 ..      52      85 ..      46      87 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                HHHHHHHHHHHHTTSS-SS--HHHHHHHHHHTT- CS
    Bromo_TP 40 irelgeqaksfaehagRseptlkDvvltLqelgi 73
                i+++ e+a +f+ ha R++ t +D+ ++L  l+i
  CDO69883.1 52 IQQVVEEAARFMRHAKRTTLTTGDIDQALRVLNI 85
                89999************************99998 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.2e-05      0.12      31      65 .]      46      80 ..      37      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
                   HHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 31 ecveefieelaseAaeickkekrKtikaehiklAv 65
                     ve  i+++ +eAa+ + ++kr t++  +i +A+
     CDO69883.1 46 SDVEYRIQQVVEEAARFMRHAKRTTLTTGDIDQAL 80
                   5578889**************************97 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.2e-05      0.21      12      67 ..      25      80 ..      19      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-05
  TFIID-31kDa 12 hliLaslgvteyeerVvlqL.ldfayrytssvLedAkvlaehakkkevslddvrlAi 67
                 + + +sl++t++ + V + L  d+ yr +++v+e+A  +++hak++++++ d+  A+
   CDO69883.1 25 RDVAESLNITNLPDIVASALaSDVEYR-IQQVVEEAARFMRHAKRTTLTTGDIDQAL 80
                 56668999********99994589999.899**********************9986 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00015      0.33      33      66 ..      43      76 ..      21      82 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
      CENP-S 33 altelvykqlenlakDLeaFakHAkRstittdDv 66
                al+  v  +++++ +    F +HAkR+t tt D+
  CDO69883.1 43 ALASDVEYRIQQVVEEAARFMRHAKRTTLTTGDI 76
                455555556888889999*************997 PP

>> Nup192  Nuclear pore complex scaffold, nucleoporins 186/192/205
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00015      0.33     744     794 ..     299     349 ..     265     427 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00015
                 SSSSSHHHHHHHHH.HHHT.GGGGXXXHHHHHHHHHHHHHHHHHHHHTSXHH CS
      Nup192 744 RkpGiepYldfvldevflk.strdlkdpaekwelqlsclelletsLasfdps 794
                 ++ G+epYl+ +l ++f+   ++    p++ ++l+++  ++l ++L+ +   
  CDO69883.1 299 QTLGVEPYLHQLLPSIFSIlLHS-ALPPSHAVQLRTTAAQILSHLLTHYSTT 349
                 689****************5555.88999******************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3288.51
//
Query:       CDO69884.1  [L=416]
Description: hypothetical protein BN946_scf184884.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-06   26.5   0.3    8.6e-06   25.5   0.3    1.5  1  F-box-like  F-box-like
    1.1e-05   25.1   0.0    2.4e-05   24.1   0.0    1.5  1  F-box       F-box domain
    0.00031   20.6   0.1    0.00073   19.4   0.1    1.6  1  F-box_4     F-box


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.3   1.4e-09   8.6e-06       2      48 .]       5      54 ..       4      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.4e-09
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrva....ldtplLWrrlvlr 48
                ++LP E+L qI+  L+p d ++ +++++r + ++     d   LWr+l+lr
  CDO69884.1  5 DDLPIEVLEQILLLLDPVDVSQFSQTSSRYHALVygdpEDQ-HLWRELYLR 54
                78***********99*******************6664444.9******96 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     4e-09   2.4e-05       3      41 ..       4      42 ..       3      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4e-09
                HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH CS
       F-box  3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdr 41
                l++LP evl++IL  L+++d+  ++++S + + l+ +d 
  CDO69884.1  4 LDDLPIEVLEQILLLLDPVDVSQFSQTSSRYHALVYGDP 42
                689**************************9999987776 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.2e-07   0.00073       3      36 ..       2      35 ..       1      40 [. 0.91

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
     F-box_4  3 dsLssLPlevlqhiaslLDsfsLsqLslvskllr 36
                 +L++LP+evl++i+ lLD + +sq+s++s++  
  CDO69884.1  2 AQLDDLPIEVLEQILLLLDPVDVSQFSQTSSRYH 35
                589***************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2938.84
//
Query:       CDO69885.1  [L=1535]
Description: hypothetical protein BN946_scf184884.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1045  (0.0582855); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.40u 0.32s 00:00:01.72 Elapsed: 00:00:00.54
# Mc/sec: 8523.52
//
Query:       CDO69886.1  [L=293]
Description: hypothetical protein BN946_scf184884.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-05   23.6   0.4       0.85   10.6   0.2    2.9  2  zf-C2H2_4  C2H2-type zinc finger
     0.0019   18.6   4.1       0.11   13.0   0.0    3.2  2  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.014   15.8   5.0       0.25   11.8   0.2    3.4  3  zf-H2C2_2  Zinc-finger double domain
      0.051   13.3   1.4      0.051   13.3   1.4    2.3  2  zf-H2C2_5  C2H2-type zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   0.00019      0.85       2      23 ..     170     193 ..     169     193 .. 0.82
   2 !   10.1   0.0   0.00027       1.2       6      21 ..     247     262 ..     245     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
   zf-C2H2_4   2 kCpiCgksFsskka....LlrHlkth 23 
                 +Cp+C   +   k+    L+rH++th
  CDO69886.1 170 ECPFC--DYVQTKQrtpdLKRHIATH 193
                 8****..88855555999******99 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00027
   zf-C2H2_4   6 CgksFsskkaLlrHlk 21 
                 Cg +Fs+++aLlrH+ 
  CDO69886.1 247 CGMTFSRRDALLRHVS 262
                 **************96 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.5     0.027   1.2e+02       3      23 .]     171     193 ..     169     193 .. 0.76
   2 !   13.0   0.0   2.5e-05      0.11       5      20 ..     246     261 ..     245     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.027
                 ETTTT..EEESSHHHHHHHHHCC CS
     zf-C2H2   3 CpdCg..ksFkrksnLkrHirtH 23 
                 Cp C+  ++  r  +LkrHi tH
  CDO69886.1 171 CPFCDyvQTKQRTPDLKRHIATH 193
                 777776666667789******99 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.5e-05
                 TTTEEESSHHHHHHHH CS
     zf-C2H2   5 dCgksFkrksnLkrHi 20 
                 +Cg++F+r++ L rH 
  CDO69886.1 246 GCGMTFSRRDALLRHV 261
                 7**************7 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   5.7e-05      0.25       4      22 ..     159     176 ..     158     177 .. 0.85
   2 ?    3.0   0.2     0.036   1.6e+02       1       9 [.     185     193 ..     185     193 .. 0.92
   3 ?    0.9   0.0      0.16   7.2e+02      11      18 ..     279     286 ..     274     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-05
   zf-H2C2_2   4 rH..irkHtgekpyeCplCdk 22 
                 +H  + +Htg   +eCp+Cd+
  CDO69886.1 159 YHavMQTHTG---WECPFCDY 176
                 5766899999...*******9 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.036
   zf-H2C2_2   1 nLrrHirkH 9  
                 +L+rHi++H
  CDO69886.1 185 DLKRHIATH 193
                 69*****99 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
   zf-H2C2_2  11 gekpyeCp 18 
                 ge+p++C+
  CDO69886.1 279 GESPVKCS 286
                 899****8 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.4   1.1e-05     0.051       3      24 ..     171     193 ..     170     194 .. 0.82
   2 ?   -3.0   0.1       1.5   6.7e+03      13      20 ..     254     261 ..     252     262 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
   zf-H2C2_5   3 CsqCDYs.tawk.snLkRHlrrkH 24 
                 C++CDY+ t+++  +LkRH++ +H
  CDO69886.1 171 CPFCDYVqTKQRtPDLKRHIA-TH 193
                 ******846665269******.99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
   zf-H2C2_5  13 ksnLkRHl 20 
                 ++ L RH+
  CDO69886.1 254 RDALLRHV 261
                 67788**8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2001.95
//
Query:       CDO69887.1  [L=428]
Description: hypothetical protein BN946_scf184884.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-87  293.8   9.9    1.3e-87  293.8   9.9    1.7  2  Ebp2      Eukaryotic rRNA processing protein EBP2


Domain annotation for each model (and alignments):
>> Ebp2  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.8      0.18   3.2e+03     236     236 ..      54      54 ..       6      89 .. 0.49
   2 !  293.8   9.9   7.1e-92   1.3e-87       7     268 .]     158     421 ..     150     421 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.18
        Ebp2 236 a 236
                 a
  CDO69887.1  54 A 54 
                 0 PP

  == domain 2  score: 293.8 bits;  conditional E-value: 7.1e-92
        Ebp2   7 salekgelkegedvvpekkkkltinnkeaLkekleeikl.kklpwvetldltskpaeie.dvedDlkRElaFykqaleavkearkrlkklgvpfkRPeD 103
                 ++l++ e   +ed++p+  +k++i+nk aL+++ ++i+l  +lpw+etl++t+ p++i+ dvedDl+RElaFykqal+ +++ar++ +k+++pf+RP D
  CDO69887.1 158 DELSD-EDALDEDAMPR--QKVEIDNKIALERIRSNIALdPSLPWTETLTVTY-PESIDvDVEDDLNRELAFYKQALHGAQTARSLAQKHNFPFTRPAD 252
                 44533.44566777777..9*********************************.789999*************************************** PP

        Ebp2 104 YFAEMvKsDehMekvkekLleeqaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfleeeeedefdvaleealkkkkkk 202
                 YFAEMvKsD+hMe+++++Ll+e+a  k++ee+rk+Re kkfgKqvq ek++eRq++Kke++e++k lk+krk + + ++ ++++fdva+e+al+++ +k
  CDO69887.1 253 YFAEMVKSDAHMERIRQRLLDESAGLKRAEEKRKEREGKKFGKQVQLEKIKERQQSKKEIEERLKGLKRKRKGALDGATGDDEDFDVAVEDALADRPSK 351
                 ************************************************************************998877889************666666 PP

        Ebp2 203 kkkkkkgkknkkrkakdkKfGfGGkkrgsKsndaessadvsgfsakk.......kkkkkgkkkkkkRpgksrR 268
                 + k+  gk++  r+a+dkK+GfGG  r+sK+n+++s++++ +    +       k++k+gk+ k+kRpgksrR
  CDO69887.1 352 RTKGPIGKAKLPRQARDKKYGFGGAGRRSKQNTKDSTDSFVQR---GgpsgrggKGGKGGKAVKAKRPGKSRR 421
                 666666777777*************************988774...34569998888899999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1619  (0.0903006); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 2550.87
//
Query:       CDO69888.1  [L=307]
Description: hypothetical protein BN946_scf184884.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2145.70
//
Query:       CDO69889.1  [L=1035]
Description: hypothetical protein BN946_scf184884.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-06   26.5   0.0    1.2e-05   25.5   0.0    1.5  1  DRMBL          DNA repair metallo-beta-lactamase
    0.00075   19.1   0.5     0.0079   15.7   0.5    2.3  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> DRMBL  DNA repair metallo-beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.3e-09   1.2e-05       2     106 ..     291     394 ..     290     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.3e-09
       DRMBL   2 elesllttdpseaqihlv.slkklekeklekylkalkekfdsvlafrPtGWtkkekkkkdlekikessksrekisiyrvpYSeHSSfrELkefvkslkp 99 
                 +l+s +t+d s++++h++ ++ ++e+ +++   k+  +   +v+++ P      + ++  l++++e+    e+++   vp   HS + EL++fv+++kp
  CDO69889.1 291 FLSSIITKDASSTRFHACeRFDRCEHVRVD-GHKSHTPAGHHVVYVNPVNMGTAD-WDVYLKQTREQILRGEQVNNLLVPLARHSPLPELRAFVSMFKP 387
                 7899**************778888877776.557777789999999999876666.67778888888888999************************** PP

       DRMBL 100 kkiiptV 106
                 +++ p++
  CDO69889.1 388 RRVEPNT 394
                 ***9986 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   8.8e-07    0.0079      25      91 ..      34     100 ..      18     186 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.8e-07
                    S--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTT....TTEEEEEE- CS
  Lactamase_B_2  25 rdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleee....pavnvheld 91 
                    +++ p++ + ll+h H DHl+gl     +     +++++ +  + l ++ vy+ +        a nv++++
     CDO69889.1  34 KAQSPSVGLYLLSHTHTDHLNGLAASSFG----QTVVCSHDAKEMLLRHEVYAERALRdmdlRAQNVRTFA 100
                    4455888889***********97766664....36999999999888888888777775444222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1035 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.53
# Mc/sec: 5882.41
//
Query:       CDO69890.1  [L=1597]
Description: hypothetical protein BN946_scf184884.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-58  197.8   0.0    1.6e-57  195.7   0.0    1.8  1  Mus7      Mus7/MMS22 family


Domain annotation for each model (and alignments):
>> Mus7  Mus7/MMS22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0   9.1e-62   1.6e-57       2     609 ..     914    1568 ..     913    1569 .. 0.87

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 9.1e-62
        Mus7    2 EslWqklftllplsevdangitqagarlkenWslvkrllsrvlersdenkema......asrnrYvrillqrcyfLvsewgW....rdaekilltly 88  
                  E++W ++f l  ls+ + +g +++ +rl+++W+l++ ll+r     d    ++       +r++Yvr+l+ rc  L+ +w W     da  +  +l 
  CDO69890.1  914 EAMWRSVFCLCALSQFSLHGNSTMSPRLTASWELIAALLERSPLTADPTADASlpkrvlRKRDEYVRVLVSRCLWLNLKWHWrldvDDASLVFNRLL 1010
                  899*************************************99998888888888899999**********************88877899999**** PP

        Mus7   89 dfFksrkladLeeEeeykspafleeLdrapsldieaeddcFhiFlklLalaiqeLrel........eskkkikrlvsRllPvhkrqytkedpitqsd 177 
                  d+Fksr++a L +E   ++p+fl++ + a   + +++d+ F +Flkl  +a  eLr+           + k k+++s   Pv ++++tk +p+t ++
  CDO69890.1 1011 DIFKSRRFASLTDE-PSDFPSFLRHNNLALLHESKRSDTAFTLFLKLVVRAAEELRKNnpqlsrstAISPKLKKILSLAVPVGSVPFTKATPPTRHE 1106
                  **************.89********99999999**********************9888999765555567788888889***************** PP

        Mus7  178 laaLrNhhdLlllLlwavpt..slrprleeikslvapkdshkeaclisirawgqlarvkistkedrsllepvvkwfnnvisellkeyelaeseieaa 272 
                  l++L N++  + +  ++ pt  +lr rl + ++ v++kd ++e++ +++r     + + +  ++    l  + +w++++ ++l++ey +        
  CDO69890.1 1107 LSMLYNRFSAVAVAIYLEPTvpNLRYRLANARRYVNFKDTDNETRRACVRG---AMHLGTLLRHLDLPLNDILDWLGEMTNTLIDEYQAG------- 1193
                  *********99999998885449****************************...99999999**99*9*******************983....... PP

        Mus7  273 iemwksfshalaeqlaeknkrtveslLkvalrslqdviqtsktleaanlllskaqlkqilellk..sleprvnqealkviqtfl............l 355 
                      k ++ + + +++ + +  +      +l+ ++   + +    ++  ll   ++ +i ++ +  s ++ v+     ++q+fl             
  CDO69890.1 1194 -VHGKGVDDNEKGRIVINIQLLLG-CIRRILETSSMSPEKNGHKYPDPALLQGPWVTRIFSTATtlSTVSAVGDQIRRLVQAFLdvralvipkprrP 1288
                  .23566777777777777666555.3344555555555777788888899*********98877224566888999999999999999999**9999 PP

        Mus7  356 qpaltteeqqqkqedddarDeesld.diallleeedt...........kefvelvrsllspalkqllsnilge...drctEkav..leavvdcwaki 435 
                  qp + +e++q++q d d++D +  d d  + l+e+ +           + +  ++ + +spa ++l+ +++++   +r  E        ++dcw+++
  CDO69890.1 1289 QPRVIAEDSQESQYDYDQFDLDLDDpDLLAALGEDISssdasenkekdRVVCGIIDKHISPAIYRLVCKHFNDpvyQRSGELRFddADRWIDCWVGC 1385
                  999999***9999999999876433245555566655899******9999999**************9999863332333332255899******** PP

        Mus7  436 aqvLvknglrevwssqyskfgleswkrirnttkrrkflllFlakllekdaaavqeieeevlsvwlqslvkrvsslkdeh.sltevlkkvkrkdptLk 531 
                  a+v v+ng ++ w+  y  fg +sw++i     rr+++l+F+  ll++d  a+  + ++++ v+++sl+ ++  l+ e+ sl+  + k    +p+++
  CDO69890.1 1386 ANVVVQNGKKD-WNF-YFSFGPQSWEKIIEPDWRRRVGLRFMYMLLQLDPPAYTTYTDRFVDVLFESLATPTVTLEHEYaSLLWSIDK--LHHPLFR 1478
                  ********998.***.****************************************************99999988888888888887..6778897 PP

        Mus7  532 nlpflaket...isislatgenqrlsllsdalanlr..........rslsldkdeftellqallrsmksvyekllaskttshgtyvdfvsr 609 
                   l   +  +   + +++ +++ +rl+ll ++++nl           + l+   +  ++ + a+l++m++ +  l   +   + +y +f++ 
  CDO69890.1 1479 GLSVGETGDdgdYHLTKHDFSEKRLELLGAMFKNLShdleseangeHHLTARNQIHITSVLAFLSTMRDILDRLQPDS-PIRTRYLTFCKS 1568
                  6665555559**************************999999999777777777888889999999999999998877.777788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.52
# Mc/sec: 9326.65
//
Query:       CDO69891.1  [L=562]
Description: hypothetical protein BN946_scf184884.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-18   66.2  12.2    1.2e-15   57.3   4.5    2.3  2  Sugar_tr  Sugar (and other) transporter
    1.8e-16   60.0  47.5    1.3e-11   44.0  30.1    2.5  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   4.5   1.4e-19   1.2e-15      55     242 ..     115     316 ..      76     350 .. 0.83
   2 !   13.4   0.9     3e-06     0.027     369     422 ..     487     539 ..     457     555 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.4e-19
                 HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  55 flvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilv 153
                   +G+++G+ f g  +d++GR++++  + +++ + a+  +a++   +  +l++      +gvG+   + +    E+ p+++ + l+ +  +++++G+lv
  CDO69891.1 115 QALGSLVGCAFWGVSSDIWGRRWAFNLTLFITGVFAMAAGASP---NATALCALVAAWSVGVGGNLPVDSAVFLEFVPASHQYLLT-VLSVWWAIGQLV 209
                 579****************************************...88999999999************************87665.5689******** PP

                 HHHHHHHH.HTSS-..........TTHHHHHHHCCHHHHHHHHH...HGGGS---HHHHHHTT-HHHHHHHHHH...HHHC.HHHHHHHHHHHHHHHHH CS
    Sugar_tr 154 aaifglgl.nktsn..........adgwrillglqlvpalllli...lllflPESPrylvekgkeeeakevlak...lrge.edadrelaeekdsleae 234
                 ++ + + l +++s           ++gwr++l+    +  ll++   ll+ l ESP +l+++g+  ea ev+++    +g+ +  + ++ e +d   a+
  CDO69891.1 210 GSLVAWPLiADFSCasaadctrasNQGWRYFLYAMGGLMTLLFFvrfLLFHLHESPKFLMSRGRAAEAVEVVRQvarFNGKeSSLTLDMLEAVDRAAAA 308
                 ******99888877899******99*****9976655555555412245679********************997664444466777777777777777 PP

                 HH.....H CS
    Sugar_tr 235 qeeekasw 242
                 q+e+++ +
  CDO69891.1 309 QREKTKGV 316
                 66664433 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3e-06
                 HHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHH CS
    Sugar_tr 369 pvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvf 422
                 +v++ + +Elfp + R++++a+++ +n ++  l  ++  ++  + +  ++++  
  CDO69891.1 487 GVLYAITPELFPAKDRGTGSALVASANHICGALAPIVAIYANLTTS-VPIYVAG 539
                 688999***************************9998888777666.4444333 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5     0.046   4.1e+02      36      55 ..      74      96 ..      57      98 .. 0.75
   2 !   44.0  30.1   1.5e-15   1.3e-11       7     268 ..      85     420 ..      74     428 .. 0.77
   3 !   21.0   9.6   1.5e-08   0.00014      72     176 ..     455     557 ..     445     562 .] 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.046
       MFS_1 36 l...lltlyalgaavaslplGrl 55
                +   +lt+++++++++++++G l
  CDO69891.1 74 WylfVLTGFGWFSLLSQVVTGLL 96
                35558888999999999999987 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 1.5e-15
       MFS_1   7 lsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 +s l+  ++g++lp+ ++  +++       +l  + alg++v+  ++G+ sd +Grr+ + l+l++++++++++  +++ ++l++l +  ++g g+ +p
  CDO69891.1  85 FSLLSQVVTGLLLPPtIIEFQYQ-----GAWLKFAQALGSLVGCAFWGVSSDIWGRRWAFNLTLFITGVFAMAAGASPNATALCALVAAWSVGVGGNLP 178
                 45555556777777766655555.....889999************************************44444435555****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslg..............Wravfyilaivsllafvlfllll..............pee 175
                 +  a++ + +p   +   + +ls+ +++G ++g l++  l++ ++              Wr+  y++++++ l+f +   +l                 
  CDO69891.1 179 VDSAVFLEFVPA-SHQYLLTVLSVWWAIGQLVGSLVAWPLIADFScasaadctrasnqgWRYFLYAMGGLMTLLFFV--RFLlfhlhespkflmsrG-- 272
                 ************.8888888*************9999999989999***************************9664..555224555555444440.. PP

       MFS_1 176 pperkrkspkeee....................................................kgtgpaplvp........awkallkdpvlw.... 210
                             +                                                    +  ++a+lv         + + l++ p l     
  CDO69891.1 273 ------------RaaeavevvrqvarfngkessltldmleavdraaaaqrektkgvevvvrearqETGVRASLVRtlrtfsldHVRGLFATPKLAvstt 359
                 ............334455555556666666666777788888888887777778888888888773333333333555555666777777776634566 PP

       MFS_1 211 illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrls 268
                 +l+i+++l++++f ++  ++p +   ++g +    ++++++    +l++vg+++al+ag+++
  CDO69891.1 360 VLIIIWALIGLAFPLYNGFIPYF-LATRGADfgdgSVYITYRNQVILSVVGLPGALIAGWMV 420
                 68888888888999999999998.77777777798778888888999999999999999986 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 1.5e-08
       MFS_1  72 falglllllfa..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvl 167
                 ++++ l++  a  +    +ll   +  ++++ +++ + +a++ ++fp ++rg + +l+++++ +  +l+p+++ +    l  +++ y+++++++l+++l
  CDO69891.1 455 TGVF-LFA--AttARTSdALLGWNCGYSVTSNVMYGVLYAITPELFPAKDRGTGSALVASANHICGALAPIVAIYAN--LTTSVPIYVAGAAFILGGLL 548
                 2233.222..134666778*****************************************************77666..999999***********998 PP

       MFS_1 168 fllllpeep 176
                 +++l +e++
  CDO69891.1 549 AFALPFEPR 557
                 555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3932.86
//
Query:       CDO69892.1  [L=501]
Description: hypothetical protein BN946_scf184884.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   63.3  12.9    3.1e-17   62.6  12.9    1.2  1  Sugar_tr  Sugar (and other) transporter
    5.9e-16   58.3  37.9    1.5e-15   57.0  37.9    1.6  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6  12.9   3.5e-21   3.1e-17      57     403 ..     114     494 ..      99     495 .. 0.74

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 3.5e-21
                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH.....HHHHHHTTS-SCCHHHHHHHHHHHHHHH CS
    Sugar_tr  57 vGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl.....vPmyisEiApkklRgalvslyqlaitfG 150
                 +G+++Gs f g+ +d++GR++s+  + +++ + a+  +a++++ ++   +vg + vG  vG+   +           +++p+++ + l ++   ++++G
  CDO69892.1 114 IGSLVGSSFWGISSDIWGRRWSYNLTLFITGVFAMAAGASPNA-TTLCALVGAWNVG--VGGNLPVdsaifLGSSHTKFSPPSHQYLL-TVLSIWWAVG 208
                 9****************************************44.4444555555555..55554441000034455688888887655.56689***** PP

                 HHHHHHHHHHH.HTSS-..........TTHHHHHHH.CCHHHHHHHH..HHGGGS---HHHHHHTT-HHHHHHHHHH...HHHC.........HHHHHH CS
    Sugar_tr 151 ilvaaifglgl.nktsn..........adgwrillg.lqlvpallll..illlflPESPrylvekgkeeeakevlak...lrge.........edadre 223
                 +lv++ + + l +++s           ++gwr++l+ +  ++++l++  +ll+ l ESP +l+++g++ ea ev+ +    +g          +++dr+
  CDO69892.1 209 QLVGSLVAWPLmANFSCasaadcprasNQGWRYFLYaMGGLMTVLFFcrFLLFHLYESPKFLMSHGRDAEAVEVVHRvarFNGRtssltlemlQEVDRA 307
                 *********99655555899*******9****998615555565555233456789*******************997663333547777777777777 PP

                 HHHHHHHHHHHHH..............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.......HHHHHHHHHHHHHHHHH CS
    Sugar_tr 224 laeekdsleaeqeee.........kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.......llvtiivgvvnfvatfv 306
                 +a+  ++  ++ +++          + +k l+ + + +   + ++ + ++    G n  + + p+++ + g +         +   +i++vv     ++
  CDO69892.1 308 AAKAGAADAKGNKATllgtlarfgGKHVKGLFATPK-LALSTSILIILWALVGLGFNLYYGFLPYFLATRGADFGdgsvyitYRNQVILSVVGLPGALI 405
                 77777777777666699*9*9999999999999988.33344444455566778999999999******999877778554444458999999999999 PP

                 HHHHHH..HS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 307 aiflvd..rfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflis 403
                 + ++v+  ++GRR    lG+++     ++++     ++++s   s+++++  +  ++  ++   +v++ +++Elfp + R++++a+++++n ++  l+s
  CDO69892.1 406 GGWMVElpYLGRR--GTLGLSTLVTGVFLMA----TTTSRS---SNALLAWNCASTVTSNIM-YGVLYAISPELFPAKDRGTGAALVACANHICGALVS 494
                 9999995569***..4455555555555554....223332...556666666655555543.44778999************************9997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0  37.9   1.7e-19   1.5e-15       3     351 ..      71     492 ..      70     494 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.7e-19
       MFS_1   3 laaflsalarsi.......lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvl 94 
                 ++++l++l+++        +g+++p    ++++    +  +l  + ++g++v+s ++G  sd +Grr+ + l+l++++++++++  +++ ++l++l   
  CDO69892.1  71 CLFCLTGLGWFSdnlwpiaAGLIIP-PTVNEFQ---YQGAWLKFAQGIGSLVGSSFWGISSDIWGRRWSYNLTLFITGVFAMAAGASPNATTLCALVGA 165
                 5556666666666645544444445.3456666...66889999************************************444444355559******* PP

       MFS_1  95 qGlgagalfpagaaliadw....fpkeergraigllsagfslGailgpllggllasslg..............Wravfyilaivsllafvlfllll... 172
                   +g g+ +p+  a++       f+++ +   + +ls+ +++G ++g l++  l+++++              Wr+  y++++++ ++f + +ll+   
  CDO69892.1 166 WNVGVGGNLPVDSAIFLGSshtkFSPPSHQYLLTVLSIWWAVGQLVGSLVAWPLMANFScasaadcprasnqgWRYFLYAMGGLMTVLFFCRFLLFhly 264
                 **********999998654122255559999999*************999999999********************************99866777444 PP

       MFS_1 173 ...........peepperkrkspkeee.......................................kgtgpaplvp...............awkallkd 206
                                                                                   k                        + k l++ 
  CDO69892.1 265 espkflmshgrD--------------AeavevvhrvarfngrtssltlemlqevdraaakagaadaK--------GnkatllgtlarfggkHVKGLFAT 341
                 444444444440..............44555566666666666668888888888777777766542........122223346777888877888888 PP

       MFS_1 207 pvlw....illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdr..lgrrrrlllallllllaalglalla 295
                 p l     il+i ++l+++gf++++ +lp +   ++g +    ++++++    +l++vg+++al++g+++    l   rr +l+l+ l+++++++a + 
  CDO69892.1 342 PKLAlstsILIILWALVGLGFNLYYGFLPYF-LATRGADfgdgSVYITYRNQVILSVVGLPGALIGGWMVELpyL--GRRGTLGLSTLVTGVFLMATTT 437
                 8774477889999999999***********9.777777777998888888899999999999********88444..5588899999999998888888 PP

       MFS_1 296 vtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                   ss++ll++ ++  ++++ ++++ l a+  +l+p++ +gt ++l+  a+++ gal
  CDO69892.1 438 SRSSNALLAWNCAS-TVTSNIMYGVLYAISPELFPAKDRGTGAALVACANHICGAL 492
                 88666666664444.56888999****************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3510.16
//
Query:       CDO69893.1  [L=556]
Description: hypothetical protein BN946_scf184884.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-20   71.4  14.5    1.1e-16   60.8   4.1    3.0  3  Sugar_tr  Sugar (and other) transporter
    2.2e-17   63.1  65.3    9.2e-16   57.7  40.5    2.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   4.1   1.2e-20   1.1e-16      56     220 ..     111     285 ..     109     332 .. 0.88
   2 !    5.2   2.2   0.00089         8      52      98 ..     388     436 ..     341     456 .. 0.76
   3 !   10.2   0.0   2.8e-05      0.25     366     404 ..     453     491 ..     438     500 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.2e-20
                 HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  56 lvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilva 154
                 ++G ++G+ f g ++d++GRk+++ i+ +++ + a+  +a++   ++ +l+    +  igvG+   + +    E+ p+++ + l+ +   +++fG+lv+
  CDO69893.1 111 NIGLLVGAAFWGVASDVWGRKWCFNITLFITGVFAIAAGASP---NYIALCSLAAVWSIGVGGNLPVDSAVFLEFVPASHQYLLT-VLSIWWAFGQLVG 205
                 6999**************************************...9**********************************87665.5679********* PP

                 HHHHHHH.HTSS-..........TTHHHHHHHCCHHHHHHHHHHGGGS...---HHHHHHTT-HHHHHHHHHHHHHCHHH CS
    Sugar_tr 155 aifglgl.nktsn..........adgwrillglqlvpallllilllfl...PESPrylvekgkeeeakevlaklrgeeda 220
                 + + + l +++s           ++gwr++l+    + ++++++++f+    ESP yl+ +g++ ea ev+ ++ + +++
  CDO69893.1 206 SLVAWPLiADFSCasaadcprasNQGWRYFLYAMGGLMMFFFVIRFFVfdmYESPKYLMGRGRDAEAVEVVHRVAKYNGR 285
                 *****99888877899*******9**********9999999999999744479******************996655433 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.00089
                 HHTHHHHHHHHHHHHHHHHH..HTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr  52 vsiflvGaiiGslfagllgd..rfGRkkslliaavlfvigavlqaaakg 98 
                   i++v+++ G+l+ag++++  ++GRk +l+i+++++ +  + + +a  
  CDO69893.1 388 QVILSVIGVPGALLAGWMVElpYLGRKGTLAISTIITGVFLFASTTART 436
                 468999************98668************99988888887774 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 2.8e-05
                 TTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 366 gwgpvpwvlvsElfpqsvRskalaiavavnwlanflisl 404
                  + +v++ +++Elfp++ R+++ ai+  +n ++ + ++ 
  CDO69893.1 453 VMYGVLYAVSPELFPTKDRGTGNAIVGSANRVFGIMVGP 491
                 3456889999************************99975 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  40.5     1e-19   9.2e-16      11     353 .]      79     491 ..      68     491 .. 0.70
   2 !   19.6  16.8   3.9e-08   0.00035      40     176 ..     390     551 ..     366     556 .] 0.83

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1e-19
       MFS_1  11 arsilgpalplal.....aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalf 103
                  +++l+p+++  l      +++++++ ++ l   +  +g +v++ ++G+ sd +Gr++++ ++l++++++ ++++  ++++ +l+ l ++ ++g g+ +
  CDO69893.1  79 FSDNLWPIVTG-LildpvVNEFNFQGPFLKL---GQNIGLLVGAAFWGVASDVWGRKWCFNITLFITGVF-AIAAgASPNYIALCSLAAVWSIGVGGNL 172
                 44445555542.2123336667766666555...788999******************************.55553435555***************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslg..............Wravfyilaivsllafvlfllll................ 172
                 p+  a++ + +p   +   + +ls+ +++G ++g l++  l++ ++              Wr+  y+++++++++fv+   ++                
  CDO69893.1 173 PVDSAVFLEFVPA-SHQYLLTVLSIWWAFGQLVGSLVAWPLIADFScasaadcprasnqgWRYFLYAMGGLMMFFFVI--RFFvfdmyespkylmgrgr 268
                 *************.77888889************99999888899999999************************996..3333366555555555555 PP

       MFS_1 173 ....peepperkrkspkeee.........................................kgtgpaplvp............awkallkdpvlw.... 210
                     +              e                                         k                     + k l++ + l     
  CDO69893.1 269 daeaV--------------EvvhrvakyngressltlellqeverqagkgatgqaamdtsaK--------AavirklrtfggsHVKGLFATRKLAysts 345
                 55551..............0555555555555556666999997777766666666654441........03344455566775555555555522444 PP

       MFS_1 211 illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdr..lgrrrrlllallllllaalglallavt.ssavl 302
                 +l+i+++l++++f ++  +++ +   ++g +    ++++++    +l+++g+++allag+++    lgr    +la++ ++++++++a + +  s+a+l
  CDO69893.1 346 LLIIVWALIGLAFPLYNGFVTYF-LATRGADfgdgSVYITYRNQVILSVIGVPGALLAGWMVELpyLGR--KGTLAISTIITGVFLFASTTARtSNALL 441
                 46666666655666544444443.444444444778888998999*****************8856666..4444555555555554444444114444 PP

       MFS_1 303 lllvlvliGfglgfvfpsllalasdlappeeagtasglfntags.lggalgp 353
                 ++     ++f++ ++++ l a+  +l+p++ +gt ++++++a+  +g+++gp
  CDO69893.1 442 GWNCG--FTFTSNVMYGVLYAVSPELFPTKDRGTGNAIVGSANRvFGIMVGP 491
                 44433..457778889************************999978888887 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 3.9e-08
       MFS_1  40 lyalgaavaslplGrlsdr..fGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGai 135
                 + ++  + ++l++G++++   +Gr+ +l ++ ++++++ l+++ ++    +ll   +   +++ +++ + +a+  ++fp ++rg +++++++++ +  i
  CDO69893.1 390 ILSVIGVPGALLAGWMVELpyLGRKGTLAISTIITGVF-LFASTTARTSnALLGWNCGFTFTSNVMYGVLYAVSPELFPTKDRGTGNAIVGSANRVFGI 487
                 67888999**********87359999************.666623555559*******************************************98775 PP

       MFS_1 136 lgpllgg.......................llasslgWravfyilaivsllafvlfllllpeep 176
                 +  +l+                        +l++ l+ +++ ++ ++++l++++++lll +e++
  CDO69893.1 488 MVGPLSHisrgitlsacadrdmvclqapiiALYADLSTSVPIWVSGALFLVSGLIALLLPFEPR 551
                 5556665588888888888888888888888888888***************997555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4171.72
//
Query:       CDO69894.1  [L=221]
Description: hypothetical protein BN946_scf184884.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1611.86
//
Query:       CDO69895.1  [L=888]
Description: hypothetical protein BN946_scf184884.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-130  433.8   0.0   5.5e-130  433.5   0.0    1.1  1  Avl9      Transport protein Avl9
    4.6e-09   36.3   0.9    9.5e-06   25.4   0.9    3.0  1  DUF2347   Uncharacterized conserved protein (DUF2347)
    1.9e-08   34.2   0.0     0.0035   17.3   0.0    2.3  2  SPA       Stabilization of polarity axis


Domain annotation for each model (and alignments):
>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.5   0.0  9.2e-134  5.5e-130       1     379 []     198     561 ..     198     561 .. 0.96

  Alignments for each domain:
  == domain 1  score: 433.5 bits;  conditional E-value: 9.2e-134
        Avl9   1 ilailvvgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfeedfvyFtleedeseteeektlfgiscvrQikaeelkartadvtRstvQ 99 
                 +l i++v+F+H  Gp++efs +       e+e+  k LpflalpDG+H  +ed++yF+l+   +++ + +t+fgisc+rQi++ +l +r+advtRstvQ
  CDO69895.1 198 VLGIALVDFNHLVGPKIEFSRG----AIFEDEEIAKILPFLALPDGAHLTTEDYSYFHLV---PTSPNPSTIFGISCNRQISSADLLVRDADVTRSTVQ 289
                 789*******************....566677889*************************...999999****************************** PP

        Avl9 100 KsvvvlsklpifgkikekLslitkayfeqkdfsnteilkelyeqlnaelkskekeeleesklfvglslrelvlkfrhkvLvlfKlllLekkvlvygspv 198
                 K+vvvl+ +p+fg i+++L +it+a f+q+dfs+++il+++y++l+++l+     +l+es l++g+slrelv+kfr+++Lvl+K+l+L+kk++++g+pv
  CDO69895.1 290 KAVVVLAAKPVFGPIRDRLGVITRALFAQRDFSDMSILDDFYSSLEHSLRG----QLTESGLYMGTSLRELVHKFRQRTLVLVKALMLQKKIMFFGHPV 384
                 *********************************************887664....567889************************************** PP

        Avl9 199 eklcelilsliSLipelieklqdsasplleslesdlelkkpeslkesdrksvleqlglPlqiFekgalflPYlpLqqldlLsdksvksflvGtsNsLll 297
                 e+lc++++sl+ Lip+l+++l+d++sp l +  ++  l++p+slk+sd ks+++++glPl++F k+a+f+PYlpLqqld L  k +  +l G++Ns+++
  CDO69895.1 385 ERLCTYQYSLVTLIPGLLQNLDDCGSPPLANRAQS--LSRPTSLKTSDPKSMMAYMGLPLDLFGKDAFFQPYLPLQQLDML--KDTACWLCGSTNSIVT 479
                 *****************************999999..********************************************..66889*********** PP

        Avl9 298 qqkelladvlvdvdeaeieikdkelkkalqlsteDkrfidelvkkveetkedaeeet..egfeGsddwiRaqfeeYlvallssv 379
                 qqke   d+lv++++ +ie+ d++l++ + l+++D++++d++vk v++ ++++ + +  ++f+Gsdd++R++feeY++a lssv
  CDO69895.1 480 QQKEI--DLLVNIETGTIEFRDQKLERLVGLTAADRKWMDDIVKDVNDGWNEDPDASmgMHFKGSDDYLRQKFEEYIMAALSSV 561
                 **998..*******************************************99886667899********************996 PP

>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.9   1.6e-09   9.5e-06       2     210 ..     202     397 ..     201     498 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.6e-09
     DUF2347   2 flikFDvkkGytivwsksv..pdveleg.vEfksLPSGihevsedlvyfv.......heeyyglsaFrqneveeeeer......nvkmysvGvlvdssn 84 
                  l++F+   G +i++s+ +  +d e+   + f +LP G h  +ed  yf            +g+s+ rq++  +   r           +v vl+ ++ 
  CDO69895.1 202 ALVDFNHLVGPKIEFSRGAifEDEEIAKiLPFLALPDGAHLTTEDYSYFHlvptspnPSTIFGISCNRQISSADLLVRdadvtrSTVQKAVVVLAAKP- 299
                 6999************99889999999999*******************999999977789********99887777766665544456777777772. PP

     DUF2347  85 erlskawryaekLkellkkllese..dntsvLeeyfekekakkedeesssekksesrerslsdassleteeealssthllssLpelldklGplifpLyk 181
                           ++L  + + l  ++  +++s+L++++                         s  + +   + + s  ++ +sL el++k+ +  ++L k
  CDO69895.1 300 ----VFGPIRDRLGVITRALFAQRdfSDMSILDDFY-------------------------SSLEHSLRGQLTESGLYMGTSLRELVHKFRQRTLVLVK 369
                 ....34467889999998877777799*********.........................2233334444456778999******************* PP

     DUF2347 182 aaLlrkrILllssapveelcslvYllslL 210
                 a +l+k+I+++ ++ ve+lc + Y l++L
  CDO69895.1 370 ALMLQKKIMFFGHP-VERLCTYQYSLVTL 397
                 ***********998.9******9999876 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.2e-06     0.025       2      53 ..     351     400 ..     350     411 .. 0.87
   2 !   17.3   0.0   5.9e-07    0.0035      61     110 ..     445     495 ..     432     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.2e-06
         SPA   2 tsllkllekftpeiillinalltskriivlstkasadevsefvLalsnlisp 53 
                 tsl +l++kf + + +l++al+++k+i+++++  +   ++ +  +l  li +
  CDO69895.1 351 TSLRELVHKFRQRTLVLVKALMLQKKIMFFGHPVER--LCTYQYSLVTLIPG 400
                 577789*************************98877..99999999888876 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 5.9e-07
         SPA  61 fknns..fPyvdlseldalekvpgyIvGvtNPiFeeqeqlWDvlydldsgsv 110
                 f + +   Py +l++ld+l+++   + G tN i ++q++  D+l+++++g++
  CDO69895.1 445 FGKDAffQPYLPLQQLDMLKDTACWLCGSTNSIVTQQKE-IDLLVNIETGTI 495
                 44445557***************************9999.7********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.51
# Mc/sec: 5273.95
//
Query:       CDO69896.1  [L=347]
Description: Glycoside Hydrolase Family 43 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-35  123.2   1.1    2.2e-35  122.4   1.2    1.4  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   1.2   1.2e-39   2.2e-35       7     288 .]      31     342 ..      27     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1.2e-39
                     CSSEESEEEEEETTC..EEEEEEEBTEE....SEEEEEEESSSSSCEEEEECEESTT.TCSTTTEECTEEEEEEEETTEEEEEEEEEETTCCCSE CS
  Glyco_hydro_43   7 sgfypDpsilrvged..yYlvtstfewf....pglrifhSkdLvnWkqvgrvlerrs.qlsmkgknasWAPeiskhdgkyylyytatkkgeakqg 94 
                     s f +Dps+++ ++d  y+l+t++++      ++l   +S +L   +  +++  + +   +++g++++WAP++s ++g+yy yy++++ g+++++
      CDO69896.1  31 SAFVHDPSLVQRNSDgkYFLFTTHNKGGiltaTNLAGDSSINLRMDTSYTTIYFELTlFSRLAGRDDIWAPDVSFYNGRYYAYYAVSTFGSQNSA 125
                     57899***998888888999999987667777777778888887666666654444404455777778*****************99******** PP

                     EEEEEESSTT.S--EECEESSCS....TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEE CS
  Glyco_hydro_43  95 ifvvtadspe.Gpwsdpiklkts....gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGP 184
                     i+++t+ s + G+w+d++++++s      ++iDp+l++d+ G+  l +g+++++     i  + l+ + +++++++ ++++++t    ++ +EG 
      CDO69896.1 126 IGLATSSSMDpGTWTDHGQVFASttgaAYNAIDPNLVIDEHGQPVLTFGSFWSD-----IFQVDLSSNLQSVSSSPIQVSFNST---SPQPEEGA 212
                     *********************999**99*************************9.....*****************99999999...99****** PP

                     EEEEETTEEEEEEE........ESTSSTT........EEEEEEEESSTTSGGEEECTCCSEE.T.....BTTSTSEEEEEEEEEE-TTSS.EEEE CS
  Glyco_hydro_43 185 hlykrdgyyYLlaa........eggtgse........yavvvarsksllgPyewkkknpiltsr.....speepiqgpGHaslvetpdge.wyiv 257
                     ++ k++  yYL+++        +     +        y+v v+rs+s +gP+ +k+++ + ++       ++ +i+ pG +s++++++   +++v
      CDO69896.1 213 FVWKHGSFYYLFFSsgtccgfdA-----NnlpppgneYKVFVGRSTSAHGPFVDKTGRDLRQTGgtlvlASHGNIYAPGGQSIFTDSKSGkDVFV 302
                     **************666443332.....23333466699999*************9999777769******************999888779998 PP

                     EEEESC..........CTTCCGTTSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 258 yhagrp..........egrglytlgRetllqrvewkaDGwp 288
                                     ++++++++  ++ l+ ++w+  Gwp
      CDO69896.1 303 XXXXXXxfvyhyipvnSPQPYSDTYASLGLNAIDWS-SGWP 342
                     877777788888888999******************.***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2276.30
//
Query:       CDO69897.1  [L=177]
Description: Glycoside Hydrolase Family 43 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-25   88.3   0.2    6.8e-25   87.9   0.2    1.1  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.2   3.8e-29   6.8e-25      10     141 ..      40     175 ..      38     177 .] 0.93

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 3.8e-29
                     EESEEEEEETTC..EEEEEEEBTEESEEEEEEESSSSS.CEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEEEEETTCCCSEEEEEEES CS
  Glyco_hydro_43  10 ypDpsilrvged..yYlvtstfewfpglrifhSkdLvn.WkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyytatkkgeakqgifvvtad 101
                      +Dps+++ ++d  y+l+ts+    ++  i ++ dL + W++vg++l + s  +++g+n++WAP++s h+g+yy yy+++  g++++gi+++t++
      CDO69897.1  40 VHDPSLIQRESDgkYFLFTSH----NKAGIITAGDLDGpWTEVGSILPSGSVIDLPGNNDIWAPDVSFHNGQYYAYYAVSVSGSQNSGIGLATSA 130
                     589*99998888889999999....5899*******977***************************************9999************* PP

                     STT.S--EECEESSCS....TSSECEEEEEEETTSEEEEEEEEEH CS
  Glyco_hydro_43 102 spe.Gpwsdpiklkts....gssgiDpslfedddGkkYlvwgqwd 141
                     + + G+w+d+++++++      ++iDp+l++d++G   l +g+++
      CDO69897.1 131 TMDpGTWTDHGQVFRTqtsdPYNAIDPNLIIDENGLPLLTFGSYW 175
                     **************99999999*************9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1272.00
//
Query:       CDO69898.1  [L=310]
Description: hypothetical protein BN946_scf184884.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-27   94.2   0.0    9.2e-27   93.7   0.0    1.2  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
     0.0002   21.0   0.0    0.00041   20.0   0.0    1.5  1  ApbA      Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
       0.17   12.0   0.1       0.52   10.4   0.1    1.8  1  Drf_DAD   DRF Autoregulatory Domain


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   1.5e-30   9.2e-27       2     124 ..     169     297 ..     168     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 1.5e-30
      ApbA_C   2 irlarweKllinaainpltalldckngellespelralvrallkEalavaeaeg..velseerleeaveavlektaa.n...rsSMlqDveagrktEid 94 
                 ++ arw+K+l+na++++l++l++c +g++l+    r  +r ++ E+l+va+a     el+e+ l  +v +++ +  + +   r+SMl D+++gr++E++
  CDO69898.1 169 VDIARWRKVLWNASFSTLCTLTRCHVGDVLALDSSRLALRDIMSEVLNVARAVLppSELREQVLTYEVVDHIIAHENpKsvfRPSMLVDLDNGRPMEVE 267
                 5668**********************************************99774333777766666665555533321355***************** PP

      ApbA_C  95 yinGavvklAeklgvetPvnellyellkal 124
                 +i+G v+++A++  + tP ++l y++l  +
  CDO69898.1 268 AIVGGVLRRAKAKTIATPKLDLTYAALAVI 297
                 *************************99766 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.9e-08   0.00041      65     149 ..      31     129 ..       9     131 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.9e-08
                 CCS-ESEEEE-SSGGGHHH....HHHHHGGGECTC.....EEEEEESSSSCHHHHHTTTS...TTS.EEEEEEEE.-EEEEEETTEEEECS--EEEEEE CS
        ApbA  65 elepidlvivtvKayqtee....aleeikplldpn.....tvvlllqNGlgheeelreal...pkp.rvlggvtt.hgatregpgevhhagkgeikige 149
                  ++++++vi + K ++        l++i ++++       t+ +llqNG+g e+ l eal    +p  v++g+++  + + +g  ++ ++g++++++g+
  CDO69898.1  31 ADRDYSYVICAFKCLPEIVttpgLLSPILSRIKTSppkepTTFVLLQNGIGIEDNLLEALskvEAPsVVISGCCWvDTTAVDGGRKIVQHGNERLVLGY 129
                 5566666666666655333000123333333332222225799*****************8884455999****9666777778899999999999997 PP

>> Drf_DAD  DRF Autoregulatory Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   8.8e-05      0.52       1      11 [.      81      91 ..      81      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.8e-05
     Drf_DAD  1 GVMDsLLEALq 11
                G+ D+LLEAL+
  CDO69898.1 81 GIEDNLLEALS 91
                566*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2233.24
//
Query:       CDO69899.1  [L=331]
Description: Carbohydrate-Binding Module Family 12 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-24   83.9   0.4    6.9e-21   74.4   0.1    2.8  2  DUF3421   Protein of unknown function (DUF3421)
  ------ inclusion threshold ------
      0.011   16.1   0.7      0.034   14.6   0.7    1.8  1  ABA_WDS   ABA/WDS induced protein
       0.03   14.4   3.1      0.044   13.8   3.1    1.2  1  DUF2076   Uncharacterized protein conserved in bacteria (DUF2
       0.15   11.6   0.1       0.22   11.0   0.1    1.1  1  DUF1974   Domain of unknown function (DUF1974)
        1.8    8.1   6.1        2.5    7.7   6.1    1.1  1  SARAF     SOCE-associated regulatory factor of calcium homoeo


Domain annotation for each model (and alignments):
>> DUF3421  Protein of unknown function (DUF3421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.3e-06     0.015      56      93 ..     181     218 ..     170     228 .. 0.83
   2 !   74.4   0.1   1.9e-24   6.9e-21       2     114 ..     201     321 ..     200     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.3e-06
                 EEEEEETT---.......TTB-EETTEEEEEEEETTEEE CS
     DUF3421  56 eWvpssdgqvpkg.AvegGrsedgepLyigrakvegslv 93 
                  W+   ++++p + A++gG + +gep yi+r+ +e s++
  CDO69899.1 181 TWILVDGKNIPTNvAIVGGEE-HGEPHYICRGFHECSVI 218
                 799999*****9977777765.6**********998765 PP

  == domain 2  score: 74.4 bits;  conditional E-value: 1.9e-24
                 TTSBEEEEEEEEETTEEEEEEE-TTS....SS.EEEEETTEEEEESEEEEEETTSB-EEEEEEEETT---...........TTB-EETTEEEEEEEETT CS
     DUF3421   2 sdgspiYvgRakhegsvlpgkvvpek....ka.ayvsyggkehekseyevLvakdpseleWvpssdgqvpkg.....AvegGrsedgepLyigrakveg 90 
                 ++g+p Y++R +he sv+ +  + +         ++ + ++e+++ +yevLv +d ++l+Wv+ + g+v  +     +vegGr++dg+pLyi++a++++
  CDO69899.1 201 EHGEPHYICRGFHECSVIRAVSIGKAspifPEgGVIGFAHEEIQLPKYEVLV-GDMRALRWVDWH-GHVDLQrlgatPVEGGRDADGTPLYIAQAHHHN 297
                 5799*********988876555444423323359******************.89*******986.555533344559********************* PP

                 EEEEEEEETTTTEEEEEETTEEEE CS
     DUF3421  91 slvpGkvhpshkvayipyggkEvs 114
                  +vpGk + + + a+ipy g+E++
  CDO69899.1 298 AIVPGKCSTKLHAAFIPYSGTEKE 321
                 *********************975 PP

>> ABA_WDS  ABA/WDS induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.7   9.4e-06     0.034      50      75 ..     127     152 ..     114     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.4e-06
     ABA_WDS  50 iaaavAvGsgGyafhEhhekkeakke 75 
                 +a+++A+G+g +a+ Eh + +e+kk+
  CDO69899.1 127 LAGIAAIGAGYFAYKEHEKSEEEKKA 152
                 6899*************999999886 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.1   1.2e-05     0.044      94     165 ..      44     136 ..      30     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
     DUF2076  94 lFGggkkerpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaapq...................p....ggGggFLggAlqtAAG 165
                 l+G+ +++ ++ +  ++p ++ g  +g+++++++qp+    +++pq++q +++++                        + Ggg L+g ++  AG
  CDO69899.1  44 LWGRLPED-REGEHHEQPHQEGGYIPGYNQPPQQQPNITA-AGYPQEKQDQPPQPqvpihdderktgwnslsdeRkkeiEVGGGLLAGIAAIGAG 136
                 56666665.4666677777777778888888888887766.666665555554445677777788877776665156778888*******99999 PP

>> DUF1974  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   6.2e-05      0.22     119     163 ..     140     184 ..     137     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.2e-05
     DUF1974 119 fedegrqeedlplvhwalqdalaqaeealdellaNfpnrvvalll 163
                 +++++++ee+++   walq+ l++ae   +e ++N p  ++ ++l
  CDO69899.1 140 YKEHEKSEEEKKANIWALQNWLHEAEARTREYYQNGPRGPATWIL 184
                 899999*******************************99999987 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.1   0.00069       2.5     194     296 ..      71     171 ..      43     182 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00069
       SARAF 194 grrgeggggggggggpgseeeqddpPppysltksqkpsssses.sqqgeqeeswrpGFWtGlatGaaaGYlagrrraqneeteeeekeksssWgssseg 291
                 ++  +++++ ++ g+   +e+qd+pP p    ++++ ++  +s s ++++e +  +G   G+a+ + aGY a ++++++ee+++++ +  ++W +++e+
  CDO69899.1  71 NQPPQQQPNITAAGY--PQEKQDQPPQPQVPIHDDERKTGWNSlSDERKKEIEVGGGLLAGIAAIG-AGYFAYKEHEKSEEEKKANIWALQNWLHEAEA 166
                 222222222222222..3444599999994444555555555555555566666789999998877.58888888888888888888889999988755 PP

       SARAF 292 sssss 296
                  +++ 
  CDO69899.1 167 RTREY 171
                 44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2262.54
//
Query:       CDO69900.1  [L=228]
Description: hypothetical protein BN946_scf184884.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1646.78
//
Query:       CDO69901.1  [L=1234]
Description: hypothetical protein BN946_scf184884.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-53  179.6   0.0    2.8e-50  171.5   0.0    2.1  2  PIF1             PIF1-like helicase
    5.2e-36  124.7   0.1      1e-35  123.7   0.1    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
  ------ inclusion threshold ------
      0.041   13.6   0.0      0.078   12.7   0.0    1.4  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00014      0.83       2      34 ..     940     972 ..     939     974 .. 0.93
   2 !  171.5   0.0   4.7e-54   2.8e-50      54     336 ..     969    1227 ..     968    1230 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00014
                 --HHHHHHHHHH......HCTS-EEEEESTTSS CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtg 34 
                 +n++Q+++fd +++av+++ +  +F++G + t 
  CDO69901.1 940 FNADQRAIFDLVVDAVHRHLPLRLFIDGKAATA 972
                 689**************************9885 PP

  == domain 2  score: 171.5 bits;  conditional E-value: 4.7e-54
                  EEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH.HHHTSCCCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE-- CS
        PIF1   54 lavAssGvAalllegGrtahsrfkiplekdeestc.kikrgsklaellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGD 149 
                  +a+A s  Aa l +gGrt+hs fk+p+++++e  +  i+ +s++ +ll ++ +iiwDEapm++r ++  ++ tl+ i+++   ++pFG k+++l GD
  CDO69901.1  969 AATATSAYAAQLYPGGRTTHSTFKVPVNEQNEMLLsPIEYNSSRGQLLREAAVIIWDEAPMANRAVLACVNDTLQRITHC---TEPFGNKIIILLGD 1062
                  589***************************9999989******************************************7...67************ PP

                  TTS-----SSSSS---BGC...CSCHHHH--EEEE-S-STTTT...........HHHHHHHHHHHCT---CCCCHH.................HHCH CS
        PIF1  150 frQilPviekgsraeivaasikeSklWkevkvlkLtknmRllsesldetekkelkeFskwllkigdGkineedeeealieiPedlllkksedkieei 246 
                  frQ  Pvi++gsra+i++asi++S+lW  ++v +L++ +R +s+           eF+ ++ +igdG+ +e       + iP  +l  +s   i+++
  CDO69901.1 1063 FRQTCPVIRRGSRAQIIDASIRSSPLWPLFSVSRLNSPIRNASD----------PEFAAFIDEIGDGSGPE-------VPIPGHML--QSVTDINSL 1140
                  *****************************************997..........79***********9765.......569*****..89999**** PP

                  CCS---S.S--...........EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE- CS
        PIF1  247 vsevygd.llqeltdkeyleerailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieeldalypteflnslkanglpnhvLkLk 336 
                  +++v++  +l+   ++++ ++r il+ptn +vd  N+ +++++pg +++yl++Ds+ + +++  e   +   +++ +    glp+h+L +k
  CDO69901.1 1141 IDFVFPPdILH---QPQHCARRSILAPTNAQVDMYNDIIINRIPGPQRTYLAADSLREVTDAGLE-SPHSILDYAARDTPPGLPPHSLTIK 1227
                  *****864877...89999************************************9999888777.78888999999999*******9998 PP

>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.1   1.7e-39     1e-35      12     190 .]     314     479 ..     304     479 .. 0.86

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 1.7e-39
  Helitron_like_N  12 ehsrflflafnllqqyvvdayakveeerlsflrknqkelraesltgeeLkealeeetedeelkllgklvilpssvpgsprymqekrqdlmaivr 105
                      +++rf   +++l+ +yvvd++ +  e rl+++r+nq+++r ++ ++  L  a+++           + ++lp+s+ gs+r   e+  d++ai+ 
       CDO69901.1 314 REERF-SIFGRLTNEYVVDMFSRNLEARLHYIRTNQQRIRQQDAEQMGLD-AVNDT----------ENIYLPASFLGSNRWASEQIADSLAIAA 395
                      44442.237899999************************87777663343.33333..........68************************** PP

  Helitron_like_N 106 elgkPdlFiTltcndkwpeikeelrkkkkaqtaadrpdivarvFhrkleaflkdllkegvfGkvsayvytv...EfQkRGlpHaHlLl 190
                       +g+P++FiT+tcn +wpei+ +l  +++ q++ d+p++v+rvF+rkl  + + l + ++f  v   +y++   EfQkRGlpHaH+Ll
       CDO69901.1 396 LHGPPTFFITVTCNRTWPEITSQL--RPG-QEYHDNPMVVCRVFRRKLAHLQHTL-RSSLFPDVGPLLYMIlstEFQKRGLPHAHILL 479
                      ************************..999.******************9988888.889998888777766666************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.078      81     169 ..     999    1116 ..     954    1125 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
      AAA_30   81 k............grarlepgtllivDEagmv.......dtkqlaallkaaekag.akvilvGDerQlasVeaGgvlrdlvea........agigta 149 
                  +            + + l+++ ++i DEa m+        +++l++++   e  g   +il+GD rQ  +V + g  +++++a          + + 
  CDO69901.1  999 NemllspieynssRGQLLREAAVIIWDEAPMAnravlacVNDTLQRITHCTEPFGnKIIILLGDFRQTCPVIRRGSRAQIIDAsirssplwPLFSVS 1095
                  14555555577753245666799*********66555555566667777777756266789**********99999999987645444433344555 PP

      AAA_30  150 eLtevvRqke.seeraaalal 169 
                  +L++ +R ++ +e++a  +++
  CDO69901.1 1096 RLNSPIRNASdPEFAAFIDEI 1116
                  555555554435555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 8266.86
//
Query:       CDO69902.1  [L=5011]
Description: hypothetical protein BN946_scf184884.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     6e-119  392.3   0.0    6.6e-20   71.5   0.0    9.9  9  AAA_5            AAA domain (dynein-related subfamily)
    1.2e-50  170.1  10.8    2.2e-19   69.6   0.0    7.5  6  AAA_lid_7        Midasin AAA lid domain
    8.2e-26   90.4   0.0    1.4e-07   31.4   0.0    8.1  8  AAA_3            ATPase family associated with various cellul
      9e-26   90.0   0.0    3.8e-25   88.0   0.0    2.2  1  AAA_lid_5        Midasin AAA lid domain
    2.3e-25   89.6   0.1    0.00016   22.1   0.0    7.3  6  AAA              ATPase family associated with various cellul
    2.5e-20   73.6  15.8    0.00024   21.5   0.2    9.0  7  AAA_16           AAA ATPase domain
    3.4e-20   72.3   0.2    0.00055   19.5   0.0    6.7  6  AAA_7            P-loop containing dynein motor region
    2.9e-17   63.2   0.2     0.0034   17.7   0.0    6.9  6  AAA_22           AAA domain
    9.4e-17   61.2   0.0      0.011   15.9   0.0    6.9  6  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    2.2e-16   59.7   0.0      0.053   12.5   0.1    7.5  7  AAA_6            Hydrolytic ATP binding site of dynein motor 
    1.7e-15   57.1   0.0      0.052   13.3   0.0    6.4  6  Sigma54_activat  Sigma-54 interaction domain
    1.1e-13   51.8   5.1      0.048   14.2   0.0    7.7  7  AAA_18           AAA domain
    8.1e-13   48.6   0.0      0.049   13.7   0.0    6.9  6  AAA_14           AAA domain
    1.8e-11   44.1   1.3        0.9    9.6   0.0    6.7  7  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    2.4e-10   40.4   0.4      0.035   13.8   0.1    6.2  5  AAA_30           AAA domain
    2.8e-10   39.9   1.0       0.64    9.4   0.0    8.0  8  Mg_chelatase     Magnesium chelatase, subunit ChlI
    5.4e-10   39.9   0.1       0.37   11.3   0.1    6.2  5  ABC_tran         ABC transporter
    6.1e-09   36.2   0.2        3.7    8.0   0.0    6.2  5  RNA_helicase     RNA helicase
    1.8e-08   33.8   0.9       0.11   11.6   0.0    5.7  6  T2SSE            Type II/IV secretion system protein
    2.9e-08   33.9   0.3      0.069   13.3   0.0    5.4  4  Sigma54_activ_2  Sigma-54 interaction domain
      3e-08   33.8   1.9       0.15   11.9   0.0    5.7  5  Rad17            Rad17 P-loop domain
    5.4e-08   33.3   9.1          1    9.6   0.0    7.1  5  AAA_28           AAA domain
    2.7e-07   30.8   0.1        2.7    8.1   0.0    6.1  5  AAA_33           AAA domain
    3.4e-07   30.1   0.8        1.3    8.8   0.0    5.5  5  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      4e-07   30.1   1.3        1.9    8.4   0.0    5.2  4  NACHT            NACHT domain
    1.3e-06   27.9   0.1      0.012   14.9   0.0    4.7  5  AAA_8            P-loop containing dynein motor region D4
    1.5e-06   27.9   1.3          5    6.9   0.1    6.1  6  AAA_29           P-loop containing region of AAA domain
    1.7e-05   24.1   0.0        3.2    6.9   0.0    3.9  4  DUF815           Protein of unknown function (DUF815)
    1.7e-05   25.2   7.7       0.99    9.7   0.1    6.1  6  AAA_19           AAA domain
    1.9e-05   24.7   0.0      0.087   12.7   0.0    4.5  4  ATPase_2         ATPase domain predominantly from Archaea
    4.4e-05   23.3   0.9        1.2    8.9   0.0    4.6  4  PduV-EutP        Ethanolamine utilisation - propanediol utili
    0.00013   21.6   7.6          5    6.7   0.2    6.1  6  AAA_25           AAA domain
    0.00016   21.0   0.0        6.9    5.9   0.0    5.8  6  Zeta_toxin       Zeta toxin
    0.00016   21.6   0.4        4.9    7.0   0.0    4.7  4  RsgA_GTPase      RsgA GTPase
    0.00044   19.9   1.4        7.7    6.1   0.0    4.6  4  SRP54            SRP54-type protein, GTPase domain
    0.00055   20.0   0.4        5.5    7.1   0.1    5.3  6  MMR_HSR1         50S ribosome-binding GTPase
     0.0013   18.5   0.0        5.3    6.7   0.0    4.2  3  IstB_IS21        IstB-like ATP binding protein
     0.0016   18.5   0.2        1.4    8.9   0.0    4.0  3  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0017   18.1   0.0          9    6.0   0.0    4.8  4  AAA_24           AAA domain
     0.0045   16.4   0.0         13    5.1   0.0    4.5  4  TniB             Bacterial TniB protein
     0.0065   15.5   0.2         13    4.7   0.0    3.4  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0076   16.2   6.5         11    5.9   0.1    5.3  4  NTPase_1         NTPase
     0.0079   16.4   1.1         50    4.2   0.0    4.5  4  Roc              Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.011   15.4   0.5         36    4.0   0.0    4.4  4  PRK              Phosphoribulokinase / Uridine kinase family
      0.012   15.4   2.9         21    4.9   0.0    4.3  4  dNK              Deoxynucleoside kinase
      0.013   15.2   0.1         11    5.6   0.0    3.8  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.036   14.1   0.0        6.9    6.6   0.0    3.6  3  ResIII           Type III restriction enzyme, res subunit
        0.2   11.4  12.4         34    4.1   0.0    5.8  4  AAA_11           AAA domain
        2.1    8.1   4.3        2.5    7.8   0.1    3.2  3  CLP1_P           mRNA cleavage and polyadenylation factor CLP


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.9e-12   6.9e-10       7      90 ..     324     415 ..     318     453 .. 0.92
   2 !   26.7   0.0   1.3e-08   4.6e-06       2      46 ..     680     724 ..     679     735 .. 0.93
   3 !   34.7   0.0   4.1e-11   1.5e-08      51     138 .]     843     930 ..     828     930 .. 0.86
   4 !   71.5   0.0   1.8e-22   6.6e-20       1     138 []    1114    1251 ..    1114    1251 .. 0.94
   5 !   36.2   0.0   1.4e-11   5.2e-09       1      60 [.    1409    1468 ..    1409    1506 .. 0.82
   6 !   58.4   0.0     2e-18   7.2e-16      49     138 .]    1521    1613 ..    1501    1613 .. 0.85
   7 !   61.8   0.0   1.8e-19   6.5e-17       1     138 []    1795    1934 ..    1795    1934 .. 0.90
   8 !   16.3   0.0     2e-05    0.0073       3      49 ..    2102    2146 ..    2101    2172 .. 0.80
   9 !   33.2   0.0   1.3e-10   4.6e-08      48     133 ..    2237    2323 ..    2217    2327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.9e-12
                 -SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--............--------G-SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5   7 ppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreik...ngttslvdsplvraaregeilvlDEveraesevlnsLlslle 90 
                 +p  gKs l+ +la++l     n+ v + +   ++ ++ l+g++  +   +gt ++++++lvra+reg+ +vl++++ra  evl+++ +l+e
  CDO69902.1 324 APSAGKSLLISHLAQLLypqvqNCIVPIHLADTSLDPRSLLGSYVSSptrPGTFEWKEGVLVRAMREGKWVVLEDIDRATMEVLGIVKPLIE 415
                 56679**************8888888888889999**********9899*****************************************98 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 1.3e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrre 46 
                 +lL G++GtgK++++ +la++l+r++   +l+ +t+++d++g+ +
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRRPLISLNLSNQTESSDILGGFK 724
                 89***************************************9987 PP

  == domain 3  score: 34.7 bits;  conditional E-value: 4.1e-11
                 ......--------G-SEEEEESGGG--HHHHHHHHHHHH..SSEEE..-SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  51 ttslvdsplvraaregeilvlDEveraesevlnsLlslle..errllleeggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                   ++v++plv+a r+g+ ++lDE++ a +e+l+s   ll   +  + l e g l+ +++    ++fr++a +np+   ++++l p++rsRf
  CDO69902.1 843 AFAFVEGPLVKALRNGDWILLDELNLATPETLESISGLLQgpTASITLTEQGSLEPVPR---HPDFRLFACMNPATdVGKKDLPPNIRSRF 930
                 5689***********************************93345566777777777776...466***********9*************9 PP

  == domain 4  score: 71.5 bits;  conditional E-value: 1.8e-22
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll 95  
                  +vl+ Gp+ +gK++ +e+la++++ +++ +++++ t  ++ +g +  +   g+ +++++ lvra r+g+ +vlDE++ a+++vl++L++ll+++r l
  CDO69902.1 1114 PVLIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEHTDIQEYIGTYVSDplTGKLVFKEGLLVRALRQGDWIVLDELNLAPTDVLEALNRLLDDNREL 1210
                  5899******************************************8899*****************************************988777 PP

                  ..-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   96 leeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                  + + +++v  + +     f+++at np+    +++ ls a+r Rf
  CDO69902.1 1211 VIPETQEVVRPHPH----FMLFATQNPPGlyAGRKVLSRAFRNRF 1251
                  77777777666655....************99************9 PP

  == domain 5  score: 36.2 bits;  conditional E-value: 1.4e-11
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........---- CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplv 60  
                  +vlLvG++G+gK+++ + +a++l+r++  v+++++t+++dl+g++++   +++ +   + 
  CDO69902.1 1409 PVLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQNTETADLIGGLRPIRNKAAIEAETIR 1468
                  59*******************************************998666665555554 PP

  == domain 6  score: 58.4 bits;  conditional E-value: 2e-18
                  ........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---..........-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5   49 ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkakndd.ller...frviatanpld.rslnelspalrsRf 138 
                  +   +++d+plv+a+r+g++++lDE+  a+++vl++L+s+le  r  +   ++  +++ +     +   f ++at+np   ++++elspalr Rf
  CDO69902.1 1521 SAMFEWRDGPLVEAMRNGDVFLLDEISLADDSVLERLNSVLEPGRTIVLAERGGADEEIPAiK--AsddFKFVATMNPGGdYGKKELSPALRNRF 1613
                  56689*************************************998887777777666666544..2459*************************9 PP

  == domain 7  score: 61.8 bits;  conditional E-value: 1.8e-19
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.............--------G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik....ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerr 93  
                  +v+L G pG+gK++l+  la + +  +  ++l+++t   dl+g+  +     +g+ +++d ++ ra +eg+ ++lDE + a+++vl+ L+ +l++r 
  CDO69902.1 1795 PVMLEGSPGVGKTSLVAALANMCGHHLCRINLSDQTDLVDLFGSDLPVeggePGQFAWKDAEFLRALQEGHWVLLDEMNLAPQSVLEGLNAVLDHRG 1891
                  599****************************************977666999*******************************************96 PP

                  EE...-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   94 ll.leeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                     ++e+g+     + +    fr++a+ npl+  ++++ l ++++ Rf
  CDO69902.1 1892 TVyIPELGRSFVRHP-S----FRIFAAQNPLHqgGGRKGLPKSFLNRF 1934
                  550555555444444.4....***********9999999999999998 PP

  == domain 8  score: 16.3 bits;  conditional E-value: 2e-05
                  EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.. CS
       AAA_5    3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikn 49  
                  ++ Gp+ +gK++l++ la +l++++++v ++  t ++d++g+ e  +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGKTLQEVSINNATDATDILGSFE--E 2146
                  5679999**********************************999..2 PP

  == domain 9  score: 33.2 bits;  conditional E-value: 1.3e-10
                  ...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.........-EEEEEESS--.-TT-TTHH CS
       AAA_5   48 k..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller...frviatanpldrslnelspa 133 
                      g+ ++vd+plvra r g+ l+lD+ + ++ +vl++L+sl e    l+ + ++ v+ + + +l++   fr+++ a p++++l++   a
  CDO69902.1 2237 GskAGRLEWVDGPLVRALRDGHWLLLDGANLCNASVLDRLNSLCEMGGALTLNERGAVNGEVQ-ILYPhpeFRLFMCADPQYGELSR---A 2323
                  244899*****************************************9999999999988774.4555589*********9955544...4 PP

>> AAA_lid_7  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0     6e-22   2.2e-19       1     106 []     482     605 ..     482     605 .. 0.94
   2 !   45.7   0.8   1.6e-14   5.9e-12       1     105 [.    1263    1356 ..    1263    1357 .. 0.97
   3 ?    5.7   0.0     0.044        16       1      64 [.    1626    1684 ..    1626    1717 .. 0.81
   4 !   43.8   0.0   6.5e-14   2.4e-11       1     104 [.    1946    2043 ..    1946    2044 .. 0.93
   5 ?    1.1   0.1       1.2   4.5e+02      51      88 ..    2993    3072 ..    2965    3079 .. 0.61
   6 ?    2.7   0.1       0.4   1.5e+02      36      95 ..    3799    3846 ..    3782    3856 .. 0.76

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 6e-22
   AAA_lid_7   1 eLeeilqskf.pllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsg..................flspsvreeifleavd 80 
                 +L+ i+++kf +l+ + a+ li+++e +r++ +       s r+++lR+L ++c+R+sall+++                   f++p+vre++flea+d
  CDO69902.1 482 DLRMIIDAKFpRLAGAPAQGLINLWEGVRALGTPA-----STRDVGLRELERFCTRISALLPSTTqsmdidhdptqqtdlvqlFPNPTVREDMFLEARD 575
                 9*********668899****************999.....**********************999********************************** PP

   AAA_lid_7  81 vFaa....slstqedrlrvaeviaehlgls 106
                 vF++    ++  +++  +va v a+hlg+s
  CDO69902.1 576 VFFGagatTTAGRAHLAAVADVAARHLGIS 605
                 **9976666667778899*********997 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 1.6e-14
   AAA_lid_7    1 eLeeilqskfpllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlrvae 97  
                  eLe+il+++++++ s+ +++++v++el+++++ssr+f +++   +lRDL++W+ R + +            ee++  +++++a++ +  +d+l v e
  CDO69902.1 1263 ELETILCRRCRIAPSYGQRIVAVFRELQKRRQSSRVFESKQGFATLRDLFRWAGRDAIS-----------YEELAANGYMLLAERARRDDDKLVVKE 1348
                  8******************************************************9777...........99************************* PP

   AAA_lid_7   98 viaehlgl 105 
                  vi++++++
  CDO69902.1 1349 VIESIMKV 1356
                  ****9986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.044
   AAA_lid_7    1 eLeeilqskf.p.llasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsg 64  
                  +Le i+++ + + +l++++++l++++e l ++++++          +lRD+l W+   +a + r+ 
  CDO69902.1 1626 DLECIVETLWqHeVLKAYTKHLLDFVEWLCAAVNDR-------AFANLRDILAWIAFSNAAIIRNA 1684
                  8999****99735********************998.......899********998777766663 PP

  == domain 4  score: 43.8 bits;  conditional E-value: 6.5e-14
   AAA_lid_7    1 eLeeilqskf.pllasvadklievyeelrseqsssrsfs..gspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlr 94  
                  +L  i+++ f + ++ +++k+i  +  l++e++ +r+f+  g+p+e++lRD+++W ++l +  +++         ++  ++  +++++++t++dr+r
  CDO69902.1 1946 DLLLICRNLFpNYPSHLLEKMIHYMAVLNEETMIKRTFAseGAPWEFNLRDVIRWTTLLCQCDPPA---------HPSVFLSSIILQRFRTSQDRDR 2033
                  899*******77**************************999******************9996655.........777888899************* PP

   AAA_lid_7   95 vaeviaehlg 104 
                  +  ++ +++g
  CDO69902.1 2034 ARLLFTDIFG 2043
                  9999988876 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 1.2
   AAA_lid_7   51 kWcrRlsalldrsg..........................................flspsvreeifleavdvFaaslst 88  
                  k +rR s++ ++ +                                           +s+  re++f+e    F ++l +
  CDO69902.1 2993 KELRRASERAAKGSkqvsprsdtmklhaywtevaqflshaaspanidsiasslrdrKISSLMREQVFQESTAAFSQRLDS 3072
                  44444444433333444433333333333333333444455566677777777777899999999999999999998865 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.4
   AAA_lid_7   36 sfsgspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlrv 95  
                  s+s ++ +i++RDL + ++++++ +            +++ ea+ +F+  +++ ++ +++
  CDO69902.1 3799 SLSNHNPDIGTRDLQRGINLVESAF------------SLAVEARACFVDAVEQHSRLQEL 3846
                  345667899************9995............58889999998877776665554 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.59   2.2e+02       2      64 ..     319     387 ..     318     449 .. 0.77
   2 ?    3.6   0.0      0.15        55       2      43 ..     680     721 ..     679     729 .. 0.91
   3 !    8.0   0.0    0.0069       2.5      48     129 ..     838     930 ..     819     932 .. 0.71
   4 !   25.4   0.0   2.9e-08   1.1e-05       2     130 ..    1115    1252 ..    1114    1253 .. 0.82
   5 ?    3.6   0.0      0.16        57       2      44 ..    1410    1452 ..    1409    1474 .. 0.90
   6 ?   -0.3   0.0       2.5   9.1e+02      98     129 ..    1582    1613 ..    1517    1614 .. 0.70
   7 !   31.4   0.0   3.8e-10   1.4e-07       2     130 ..    1796    1935 ..    1795    1936 .. 0.78
   8 ?    3.8   0.0      0.13        49       4      44 ..    2103    2143 ..    2101    2153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.59
       AAA_3   2 vllegvPGlaktllvkalakaldlefkr....iqft.pdllPsdilGtevfeeke.kefefkkGpvfan 64 
                 +ll+++P  +k ll+++la+ l  +++     i ++ + l P  +lG+ v + ++  +fe k+G ++  
  CDO69902.1 319 ILLTSAPSAGKSLLISHLAQLLYPQVQNcivpIHLAdTSLDPRSLLGSYVSSPTRpGTFEWKEGVLVRA 387
                 7999****************9988887622223433144678889999888877668889888887754 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.15
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilG 43 
                 +ll+g  G++kt +v +la+ l   +  + +      sdilG
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRRPLISLNLSNQTESSDILG 721
                 7999******************99999999999999999988 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0069
       AAA_3  48 eekekefefkkGpvfanl.....lladeinrappktqsalleamee....rqvtvegethklpe..pflvlatqnPieqeGtyplpeaqldrf 129
                  +++  f f +Gp+++ l     +l de+n a+p t  ++   ++      ++t +g+  ++p+   f ++a  nP    G   lp     rf
  CDO69902.1 838 GKSKFAFAFVEGPLVKALrngdwILLDELNLATPETLESISGLLQGptasITLTEQGSLEPVPRhpDFRLFACMNPATDVGKKDLPPNIRSRF 930
                 3445679999***99865444449***********98766555554110034555666667765226*******************9988888 PP

  == domain 4  score: 25.4 bits;  conditional E-value: 2.9e-08
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsalleameerqvtv 93  
                  vl+eg    +kt  ++ la+  + +f ri         + +Gt v +  + ++ fk+G ++  l     ++ de+n ap+ +  al   +++++  v
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEHTDIQEYIGTYVSDPLTGKLVFKEGLLVRALrqgdwIVLDELNLAPTDVLEALNRLLDDNRELV 1211
                  7999*99************************9999999********************99875444444999***********99988887665544 PP

       AAA_3   94 egethkl...pepflvlatqnPie.qeGtyplpeaqldrfl 130 
                    et+++   +  f+++atqnP   + G   l  a  +rfl
  CDO69902.1 1212 IPETQEVvrpHPHFMLFATQNPPGlYAGRKVLSRAFRNRFL 1252
                  444444411155699******97525788888888888886 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.16
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGt 44  
                  vll g  G +kt + +  a++l+ ++k + +  +   +d++G 
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQNTETADLIGG 1452
                  799999**************************99999999984 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 2.5
       AAA_3   98 hklpepflvlatqnPieqeGtyplpeaqldrf 129 
                   k ++ f  +at nP    G  +l  a  +rf
  CDO69902.1 1582 IKASDDFKFVATMNPGGDYGKKELSPALRNRF 1613
                  455678999***************99999999 PP

  == domain 7  score: 31.4 bits;  conditional E-value: 3.8e-10
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke..kefefkkGpvfanl.....lladeinrappktqsalleameer.. 89  
                  v+leg PG++kt lv ala++ + ++ ri +       d+ G+++  e     +f  k    +  l     +l de+n ap  +   l  +++ r  
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMCGHHLCRINLSDQTDLVDLFGSDLPVEGGepGQFAWKDAEFLRALqeghwVLLDEMNLAPQSVLEGLNAVLDHRgt 1892
                  79*****************************98777789999887655443467777777666543333339*********9998777666665421 PP

       AAA_3   90 .qvtvegethklpepflvlatqnPieqeGt.yplpeaqldrfl 130 
                    +   g+++  +  f ++a+qnP++q G    lp++ l+rf 
  CDO69902.1 1893 vYIPELGRSFVRHPSFRIFAAQNPLHQGGGrKGLPKSFLNRFT 1935
                  144556788888999***********9876156********95 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.13
       AAA_3    4 legvPGlaktllvkalakaldlefkriqftpdllPsdilGt 44  
                  ++g    +kt+l+++la+ l+ +++ + +      +dilG+
  CDO69902.1 2103 VNGPKNCGKTTLIRTLANLLGKTLQEVSINNATDATDILGS 2143
                  56666789*******************99999999999985 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0     1e-27   3.8e-25       2     105 ..     945    1048 ..     944    1049 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1e-27
   AAA_lid_5    2 LellvknyLkevsltdqalvtdvvefYlelkklaerkeltdgagqkphfSlRtlsraLsyartilklaglrralyeGfsmsFltqLdsesrkkvekl 98  
                  L ++v +y+ ++ + d+  + dv+efY ++k+lae+ ++ dg++++phfS+Rtl raL++a++++++++lrral+eG+ m+F+  Ld  s ++v +l
  CDO69902.1  945 LLTIVAQYIGACAVGDKGAIMDVAEFYSAVKRLAEERQIADGSNHRPHFSMRTLARALTFAADMAPKYSLRRALWEGCLMAFTMVLDGPSAAAVTAL 1041
                  6789********************************************************************************************* PP

   AAA_lid_5   99 irkillk 105 
                  ++k++l+
  CDO69902.1 1042 AQKHILA 1048
                  ***9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-05     0.017       1      37 [.     680     716 ..     680     795 .. 0.77
   2 !   11.2   0.0     0.001      0.38       1      40 [.    1115    1156 ..    1115    1235 .. 0.85
   3 !   14.1   0.0   0.00013     0.047       1      36 [.    1410    1445 ..    1410    1559 .. 0.84
   4 !   22.1   0.0   4.5e-07   0.00016       1      35 [.    1796    1830 ..    1796    1877 .. 0.87
   5 !   13.1   0.0   0.00026     0.095       2      35 ..    2102    2135 ..    2101    2154 .. 0.85
   6 ?    2.9   0.1      0.37   1.4e+02      36      85 ..    4906    4955 ..    4881    4972 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.7e-05
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk 37 
                 +ll+G  GtGKT+++  +a+ l ++++++++s+ +++
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRRPLISLNLSNQTES 716
                 69*****************************998844 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.001
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS..SSSTT CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsell..skyvg 40  
                  vl+ Gp   GKT+ ++ +a+ +g +f++i+ +e +  ++y+g
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEHTdiQEYIG 1156
                  6899**************************999884344554 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 0.00013
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSS CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsells 36  
                  vll+G  G+GKT++++  a+ lg+++  +++++ ++
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQNTE 1445
                  79****************************998873 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 4.5e-07
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsell 35  
                  v+l G pG+GKT+l+ a+a+ +g ++++i++s+ +
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMCGHHLCRINLSDQT 1830
                  6899***************************9977 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 0.00026
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsell 35  
                  ++ Gp+ +GKT+l++ +a+ lg ++ e+s  + +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGKTLQEVSINNAT 2135
                  678*******************999999887766 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.37
                  SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHH CS
         AAA   36 skyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeerv 85  
                  s+ + +  +++r ++++a+e++   ++fi  +d+l+++r    +++e++   
  CDO69902.1 4906 SDGICQDHERLRTVLRRAEEQR-VMVVFI-VLDSLHSKRtgGAGANENSILS 4955
                  667788999**********998.666666.5888888884323344444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.39   1.4e+02      24      51 ..     316     343 ..     301     363 .. 0.75
   2 !   21.5   0.2   6.7e-07   0.00024      25     164 ..     678     886 ..     664     891 .. 0.59
   3 !    9.2   0.1    0.0041       1.5      26      70 ..    1114    1161 ..    1099    1219 .. 0.62
   4 !   21.4   0.3   7.3e-07   0.00027      23     155 ..    1405    1557 ..    1390    1569 .. 0.57
   5 !   10.5   0.0    0.0016      0.58      25      51 ..    1794    1819 ..    1780    1889 .. 0.80
   6 !    9.5   0.1    0.0034       1.2      26     128 ..    2100    2210 ..    2079    2283 .. 0.52
   7 ?   -1.8   0.1       9.6   3.5e+03     106     146 ..    4893    4940 ..    4851    4947 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.39
      AAA_16  24 pelvllsGesGvGKsslvrellralekd 51 
                    +ll+ ++  GKs l+ +l++ l  +
  CDO69902.1 316 QLPILLTSAPSAGKSLLISHLAQLLYPQ 343
                 2789*****************9766554 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 6.7e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekd.......................................ggiflrgkcdqlesaipysalaqalareellrq 84 
                 e +ll+Ge G+GK+s+v++l+  l++                                        gg                          ++ r+
  CDO69902.1 678 EPILLTGETGTGKTSVVTHLASLLRRPlislnlsnqtessdilggfkpvdaripgaelqqrfldlfGG--------------------------TFSRK 750
                 789******************65555555555555555444444444443333333333333333322..........................33333 PP

      AAA_16  85 lldeaesaeleawrekleeala...........................................................avpelagaeasrllellk 124
                  +++ e++ + a +e+  +++a                                                           +v+++ g+++ +++ +  
  CDO69902.1 751 KNAHFEESVRKAVQERKWKRAAglwleatkmaknriqakqaeedakeleggtprkrrkvesaglkismdawdaferdvqafEVQHVQGKSKFAFAFVEG 849
                 333322222222222222222244444555555555555555555556666667777777888888888888888877777777777776666666655 PP

      AAA_16 125 rllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                  l++ l++++    ++lD+l  a +++l+ ++ Ll+ +++
  CDO69902.1 850 PLVKALRNGDW---ILLDELNLATPETLESISGLLQGPTA 886
                 66677777554...99999999999999999999998775 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0041
      AAA_16   26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy......s 70  
                   vl+ G+  +GK+s ++ l+++       f+r ++++++   +y      +
  CDO69902.1 1114 PVLIEGPTSSGKTSSIEYLAQRTG---HRFVRINNHEHTDIQEYigtyvsD 1161
                  599*****************7444...459999999998888884333322 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 7.3e-07
      AAA_16   23 rp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.......ipy..salaqalareellrqllde....aesaeleawrekleeal 105 
                  r  e vll+Ge G+GK+s+ +  ++ l ++   + + +c+q+++        +p    a ++a + ++ ++ l+ +    + + + +a  +++++ l
  CDO69902.1 1405 RFnEPVLLVGETGCGKTSVCQLYAEVLGRT---LKAVNCHQNTETadligglRPIrnKAAIEAETIRDAVALLA-QcgvsDIAEDTSALTTAIDGLL 1497
                  33488*******************877777...45566666644423444442223322222221112222222.2344444445555555555555 PP

      AAA_16  106 aavpelagaea...srllellkrllallsrder........plvlvlDdlqwadeaslqll 155 
                  ++++ ++++ +   +++++ l+rl a  + ++           v++lD++  ad++ l+ l
  CDO69902.1 1498 KSGSMATAQ-EaslRDMRARLQRLSAMFEWRDGplveamrnGDVFLLDEISLADDSVLERL 1557
                  544444444.348899999999999888887883444444334677777777777665554 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.0016
      AAA_16   25 elvllsGesGvGKsslvrellralekd 51  
                    v+l G +GvGK+slv +l+  ++++
  CDO69902.1 1794 KPVMLEGSPGVGKTSLVAALA-NMCGH 1819
                  6799**************999.45555 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0034
      AAA_16   26 lvllsGesGvGKsslvrellralekd..........ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpela 112 
                  l ++ G++ +GK++l+r+l++ l k+          ++  + g +++ + + + s++++ l   ++l +ll   +  +l+  ++++    +++++++
  CDO69902.1 2100 LAIVNGPKNCGKTTLIRTLANLLGKTlqevsinnatDATDILGSFEETDLGYRVSVVLEGL-L-GVLDDLLCSGTGWQLPMVSDHIALLRSSSRAVS 2194
                  56899***************98888877666655542222555555553333335566666.3.333333333333344444443333333333333 PP

      AAA_16  113 gaeasrllellkrlla 128 
                  + +++++l+ l+++la
  CDO69902.1 2195 DTSPQAVLRRLSQILA 2210
                  3333333333333332 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 9.6
      AAA_16  106 a..........avpelagaeasrllellkrll.allsrderplvlvlDdlqw 146 
                  +          ++++  +++++rl+ +l+r+  ++       + +vlD l+ 
  CDO69902.1 4893 SsaadlwqleiIISDGICQDHERLRTVLRRAEeQRVMV----VFIVLDSLHS 4940
                  12223333333444445555566666666666433333....8888998885 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.042        15       6      67 ..     289     349 ..     284     373 .. 0.80
   2 !   18.1   0.0   4.1e-06    0.0015      26      77 ..     670     718 ..     662     722 .. 0.86
   3 ?    6.3   0.0     0.017       6.2      25      58 ..    1104    1137 ..    1083    1160 .. 0.79
   4 !   19.5   0.0   1.5e-06   0.00055      10      62 ..    1384    1435 ..    1380    1451 .. 0.81
   5 !   10.8   0.0   0.00071      0.26      29      74 ..    1789    1831 ..    1769    1835 .. 0.85
   6 ?    2.6   0.0      0.23        83      28      68 ..    2093    2132 ..    2085    2146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.042
       AAA_7   6 eakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylslti 67 
                 ++++   l+ t   v+    + l+l+ + p+ll+     GK+++i++l + l   +++  ++
  CDO69902.1 289 STDMAPQLIDTPTAVQALRQVALHLSTQLPILLTSAPSAGKSLLISHLAQLLY-PQVQNCIV 349
                 66777789999999999999**************************9988776.44555444 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 4.1e-06
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanq 77 
                 l + ++   p+ll+G+tGtGKt+++++l + l       +++n+s+qt++++
  CDO69902.1 670 LATAISLAEPILLTGETGTGKTSVVTHLASLLR---RPLISLNLSNQTESSD 718
                 566788899******************999998...6778899999999987 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.017
       AAA_7   25 llelllknkkpvllvGptGtGKtviikdllkkld 58  
                  l + + +++ pvl+ Gpt +GKt+ i+ l ++  
  CDO69902.1 1104 LARIISAKRFPVLIEGPTSSGKTSSIEYLAQRTG 1137
                  677888999****************998777655 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 1.5e-06
       AAA_7   10 seilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkeky 62  
                  ++ +V t    r+ +l+   l+ + pvllvG+tG+GKt++++ + + l  +++
  CDO69902.1 1384 YSQVVWTSAMQRLFVLTARALRFNEPVLLVGETGCGKTSVCQLYAEVLG-RTL 1435
                  678999***********************************99988887.333 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00071
       AAA_7   29 llknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqts 74  
                   ++ +kpv+l G+ G+GKt+++  l + +    +    in+s qt+
  CDO69902.1 1789 ACQLQKPVMLEGSPGVGKTSLVAALANMCG---HHLCRINLSDQTD 1831
                  57889******************9999888...7788888888886 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.23
       AAA_7   28 lllknkkpvllvGptGtGKtviikdllkkldkekylsltin 68  
                  ++++n+   ++ Gp+ +GKt++i++l + l  ++++ ++in
  CDO69902.1 2093 TCVSNGWLAIVNGPKNCGKTTLIRTLANLLG-KTLQEVSIN 2132
                  67888888999**************999888.555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       7.1   2.6e+03       4      29 ..     315     340 ..     312     381 .. 0.73
   2 !   17.7   0.0   9.3e-06    0.0034       7      57 ..     679     720 ..     674     724 .. 0.92
   3 ?    7.5   0.0     0.013       4.8       9     118 ..    1116    1206 ..    1111    1218 .. 0.78
   4 !   14.6   0.0   8.1e-05      0.03       8      58 ..    1410    1451 ..    1407    1566 .. 0.73
   5 ?    5.8   0.0     0.042        15       7      56 ..    1795    1835 ..    1790    1869 .. 0.84
   6 ?    7.2   0.0     0.015       5.6       8      58 ..    2101    2142 ..    2096    2147 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 7.1
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 t+  +++t  + +GK++l+  l++ l
  CDO69902.1 315 TQLPILLTSAPSAGKSLLISHLAQLL 340
                 667789999999*********99987 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 9.3e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdll 57 
                  +++tGe+GtGKT ++  l++ l         r+++++ +l+++t+s+d+l
  CDO69902.1 679 PILLTGETGTGKTSVVTHLASLL---------RRPLISLNLSNQTESSDIL 720
                 589********************.........*************999997 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.013
      AAA_22    9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105 
                  ++ G++ +GKT +++ l+++          + ++v+++  + t+ ++    +   + ++l +    +  + e l   + ++++   +++DE     +
  CDO69902.1 1116 LIEGPTSSGKTSSIEYLAQRT---------GHRFVRINNHEHTDIQEY---IGTYVSDPLTG----KLVFKEGLLVRALRQGD--WIVLDELNLA-P 1193
                  789*****************9.........9********999944444...44444443334....45555888888888888..8999999999.9 PP

      AAA_22  106 eealeeLrsllnl 118 
                   ++le L +ll++
  CDO69902.1 1194 TDVLEALNRLLDD 1206
                  9999999888775 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 8.1e-05
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllr 58  
                  ++++Ge+G+GKT +++ ++e l         ++++  v++ + t+ +dl  
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVL---------GRTLKAVNCHQNTETADLIG 1451
                  589******************9.........77777777777776665543 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.042
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56  
                   +++ G +G+GKT l++ l++           + ++ +++l+ +t++ dl
  CDO69902.1 1795 PVMLEGSPGVGKTSLVAALANMC---------GHHLCRINLSDQTDLVDL 1835
                  57899***************997.........777778887777776666 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.015
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllr 58  
                   +v G++ +GKTtl+r+l++ l         ++++ +v +++ t+ +d+l 
  CDO69902.1 2101 AIVNGPKNCGKTTLIRTLANLL---------GKTLQEVSINNATDATDILG 2142
                  6889****************99.........77777777777777777765 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.072        26      47      66 ..     383     402 ..     375     470 .. 0.73
   2 !   10.5   0.0    0.0013      0.48      48     108 ..     851     930 ..     823     940 .. 0.70
   3 !    9.5   0.0    0.0026      0.97      46      96 ..    1172    1233 ..    1122    1248 .. 0.87
   4 !   15.9   0.0   2.9e-05     0.011      50     113 ..    1859    1939 ..    1846    1945 .. 0.84
   5 !    9.1   0.0    0.0035       1.3      48     109 ..    2250    2329 ..    2224    2337 .. 0.77
   6 ?    0.1   0.0       2.3   8.2e+02      62     110 ..    3546    3594 ..    3533    3599 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.072
                   HHHHHHHHT-EEEEE-GGG- CS
  Dynein_heavy  47 alekaakegsWvlLqNchla 66 
                   +l +a++eg+Wv+L+++  a
    CDO69902.1 383 VLVRAMREGKWVVLEDIDRA 402
                   6889************9877 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0013
                   HHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.........................HHTT-EEEEEEES-T.....TS-HHHHHTS CS
  Dynein_heavy  48 lekaakegsWvlLqNchla.pswlkeLeki..........leel........eeklhssfRlwltsepsp.....kfPislLqss 108
                   l ka ++g+W+lL +  la p+   +Le+i          +  +            h++fRl+  ++p++     ++P ++  + 
    CDO69902.1 851 LVKALRNGDWILLDELNLAtPE---TLESIsgllqgptasI--TlteqgslePVPRHPDFRLFACMNPATdvgkkDLPPNIRSRF 930
                   7799***************444...5555555466665551..055556666666789******999988455434666665555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0026
                    HHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES CS
  Dynein_heavy   46 kalekaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltsep 96  
                     +l +a ++g+W++L +  la ++ l+ L+++l++             + h++f l+ t +p
    CDO69902.1 1172 GLLVRALRQGDWIVLDELNLApTDVLEALNRLLDDNrelvipetqeVVRPHPHFMLFATQNP 1233
                    57889****************778899*****886667788877554455889999999887 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 2.9e-05
                    HHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES-T......TS-HHHHHTSEEEEE CS
  Dynein_heavy   50 kaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltsepsp......kfPislLqssikvtn 113 
                    +a +eg+WvlL ++ la +s l+ L+ +l++           +   h+sfR++   +p +       +P+s+L++ +kv +
    CDO69902.1 1859 RALQEGHWVLLDEMNLApQSVLEGLNAVLDHRgtvyipelgrSFVRHPSFRIFAAQNPLHqgggrkGLPKSFLNRFTKVYV 1939
                    789**************556699*****98667888888887667799******9999877888845********999976 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0035
                    HHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.......................HHTT-EEEEEEES-TT.S-HHHHHTSE CS
  Dynein_heavy   48 lekaakegsWvlLqNchla.pswlkeLekileel................eeklhssfRlwltsepspk.fPislLqssi 109 
                    l +a ++g+W+lL    l+ +s l++L++++e                      h++fRl++ ++p+   +  ++ +++i
    CDO69902.1 2250 LVRALRDGHWLLLDGANLCnASVLDRLNSLCEMGgaltlnergavngevqILYPHPEFRLFMCADPQYGeLSRAMRNRGI 2329
                    77899**************8888999999976336667777777777655444588******999986336666666555 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 2.3
                    -GGG-CCCHHHHHHH.......HHTT-EEEEEEES-TTS-HHHHHTSEE CS
  Dynein_heavy   62 NchlapswlkeLekileeleeklhssfRlwltsepspkfPislLqssik 110 
                     c   +++++++++ l +++e l+++ R ++   + +++ ++ L++s +
    CDO69902.1 3546 TCMYYAQFVPRVTSSLASQQEALEKEIRGFIKLASWKDINVHALKQSAQ 3594
                    588889**********999***********************9999875 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.7   1.7e+03      83     110 ..     389     416 ..     387     450 .. 0.86
   2 !    8.7   0.0     0.002      0.73      25      74 ..     670     719 ..     663     726 .. 0.87
   3 !    6.9   0.0    0.0072       2.6      83     170 ..     856     941 ..     840    1006 .. 0.87
   4 !    8.8   0.0    0.0019      0.71      14      75 ..    1093    1155 ..    1088    1262 .. 0.68
   5 !   12.5   0.1   0.00014     0.053      10      72 ..    1385    1447 ..    1381    1453 .. 0.93
   6 !    7.8   0.0     0.004       1.5      16      71 ..    1777    1832 ..    1773    1837 .. 0.91
   7 ?    3.2   0.1     0.099        36      34      73 ..    2100    2139 ..    2087    2145 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.7
       AAA_6  83 qsGaWgCfdeFnrielevLSvvaqqikt 110
                 + G W+ +++++r ++evL +v   i++
  CDO69902.1 389 REGKWVVLEDIDRATMEVLGIVKPLIES 416
                 579*****************99877765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.002
       AAA_6  25 ltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyksl 74 
                 l++A++l     ++G +gtGKt  v  La+ l + ++ +n s+q + + +
  CDO69902.1 670 LATAISLAEPILLTGETGTGKTSVVTHLASLLRRPLISLNLSNQTESSDI 719
                 67788888888899*****************************9987665 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0072
       AAA_6  83 qsGaWgCfdeFnrielevLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnp.gyagrteLPdnLkalfRpvammvPdle 170
                 + G W+ +de+n  + e L  ++  ++  + +++ ++ + ++  + +  ++++++f  mnp +  g+++LP n+++ f ++ +  Pd++
  CDO69902.1 856 RNGDWILLDELNLATPETLESISGLLQGPTASITLTE-QGSL--EPVPRHPDFRLFACMNPaTDVGKKDLPPNIRSRFTEIDVPPPDSD 941
                 5699999999999999999999998887666655544.4445..579999***********4568******************999975 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0019
       AAA_6   14 iTpltdrcyltltqAlklklg.gapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslg 75  
                  +Tp  +   + l++ ++ k     ++Gp+  GKt ++  La+  ++ +v +n +++ d++   
  CDO69902.1 1093 MTPSVEAKLIDLARIISAKRFpVLIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEHTDIQEYI 1155
                  56666666666666666554414689******************************9998643 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 0.00014
       AAA_6   10 erLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyk 72  
                  +++v T   +r ++  ++Al+++    + G +g GKt  ++  a+ l++++  +nc+++ ++ 
  CDO69902.1 1385 SQVVWTSAMQRLFVLTARALRFNEPVLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQNTETA 1447
                  6799****************************************************9988765 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.004
       AAA_6   16 pltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldy 71  
                  p t    + +++A++l+    ++G+ g GKt  v  La++ +++++ +n sdq d 
  CDO69902.1 1777 PTTRDNVMRVVRACQLQKPVMLEGSPGVGKTSLVAALANMCGHHLCRINLSDQTDL 1832
                  667777788999*****************************************996 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.099
       AAA_6   34 ggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyks 73  
                   + ++Gp   GKt  ++ La+ l+k++  + ++++ d++ 
  CDO69902.1 2100 LAIVNGPKNCGKTTLIRTLANLLGKTLQEVSINNATDATD 2139
                  56789********************998888877777665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.97   3.6e+02       7      67 ..     301     365 ..     296     406 .. 0.75
   2 !   12.1   0.0   0.00031      0.11       9      59 ..     664     711 ..     657     720 .. 0.77
   3 !   11.5   0.0   0.00048      0.18      10     122 ..    1100    1209 ..    1092    1247 .. 0.84
   4 !   13.3   0.0   0.00014     0.052       6      61 ..    1391    1443 ..    1387    1451 .. 0.82
   5 !    9.5   0.0     0.002      0.73       7     142 ..    1778    1915 ..    1773    1939 .. 0.74
   6 ?   -1.8   0.0       6.1   2.2e+03      46     106 ..    3238    3300 ..    3231    3305 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.97
                      HHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH.HSTTTTS-EEEEETTTS...-TTCHH CS
  Sigma54_activat   7 alkelleqikkvaktdlsvlitGesGtGKellaraihe.askrkekpfvavncaai...peelle 67 
                      +  ++l+q++   +t+l++l+t    +GK+ll +++ +   ++ ++ +v +  a++   p++ll 
       CDO69902.1 301 TAVQALRQVALHLSTQLPILLTSAPSAGKSLLISHLAQlLYPQVQNCIVPIHLADTsldPRSLLG 365
                      55677888999999****************99888877445555666777777765334555555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00031
                      HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETT CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavnca 59 
                      ++l+++++++++   ++l+tGe+GtGK+ + +++ +  +   +p++++n +
       CDO69902.1 664 TSLMARLATAISLAEPILLTGETGTGKTSVVTHLASLLR---RPLISLNLS 711
                      567788888999999*************99887766554...566666655 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00048
                       HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEE CS
  Sigma54_activat   10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka..dgGtlfL 99  
                       +l++ ++ + +++ +vli+G + +GK+    +i    +r+ ++fv++n  + +   ++  +  +++   tG    k+Gl+ +a  +g  + L
       CDO69902.1 1100 KLIDLARIISAKRFPVLIEGPTSSGKTS---SIEYLAQRTGHRFVRINNHEHT--DIQEYIGTYVSDPLTGKLVFKEGLLVRAlrQGDWIVL 1186
                       5667777788889*************86...56667788999******87655..478888899***************9988667889*** PP

                       ETGGGS-HHHHHHHHHHHHHSEE CS
  Sigma54_activat  100 DeigelplelQekLlrvlqegev 122 
                       De++  p+++ e L r+l++++ 
       CDO69902.1 1187 DELNLAPTDVLEALNRLLDDNRE 1209
                       ******************98765 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 0.00014
                       HHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat    6 ealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai 61  
                       +a+++l+  ++++ + + +vl++Ge+G+GK+ + +++ e   r+     avnc + 
       CDO69902.1 1391 SAMQRLFVLTARALRFNEPVLLVGETGCGKTSVCQLYAEVLGRTL---KAVNCHQN 1443
                       68999999999***********************99887766544...47777655 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.002
                       HHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-T..TCHHHHHH..EBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat    7 alkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipe..elleseLF..GhekGaFtGAekekkGlfekadg 94  
                       ++++ + ++ ++ + + +v+++G  G+GK+ l  a+ +      +++ ++n ++ ++  +l+ s+L   G e G F    k+ + l    +g
       CDO69902.1 1778 TTRDNVMRVVRACQLQKPVMLEGSPGVGKTSLVAALANMCG---HHLCRINLSDQTDlvDLFGSDLPveGGEPGQFA--WKDAEFLRALQEG 1864
                       5566777888899999**************99999987766...678899998875422577777733366777764..3333334444566 PP

                       SEEEEETGGGS-HHHHHHHHHHHHHS...EEESBTSSSEEE--EEEEEEES CS
  Sigma54_activat   95 GtlfLDeigelplelQekLlrvlqeg...evervGsskeikvdvriiaatn 142 
                         ++LDe++  p ++ e L  vl+++    +  +G s  ++ ++ri aa n
       CDO69902.1 1865 HWVLLDEMNLAPQSVLEGLNAVLDHRgtvYIPELGRSFVRHPSFRIFAAQN 1915
                       689999999999999999999999873223567888888999999888766 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 6.1
                       STTTTS-EEEEETTTS-TT.CHHHHHHEBSSSSSTTTSS-BE.HHHHHTTTSEEEEETGGGS- CS
  Sigma54_activat   46 skrkekpfvavncaaipee.lleseLFGhekGaFtGAekekk.GlfekadgGtlfLDeigelp 106 
                        + ++kp   v+ a+i +  +l+++LFG ++ +    +++   G+++ka    l+  e ++lp
       CDO69902.1 3238 AQSRKKPNTLVEAADIRKLcVLHQHLFGNQRSTLAIIDSDADfGALRKALTRDLLASEASHLP 3300
                       5667888999999999765499*******9998888777777788888877666666666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       7.1   2.6e+03       1      22 [.     319     340 ..     319     398 .. 0.83
   2 !   10.0   0.0    0.0027      0.99       1      35 [.     680     717 ..     680     791 .. 0.77
   3 ?    6.2   0.0     0.038        14       1      32 [.    1115    1150 ..    1115    1211 .. 0.69
   4 ?    5.5   0.0     0.066        24       1      58 [.    1410    1468 ..    1410    1499 .. 0.70
   5 !   14.2   0.0   0.00013     0.048       1      85 [.    1796    1893 ..    1796    1905 .. 0.74
   6 !    8.9   0.1    0.0057       2.1       2      35 ..    2102    2133 ..    2102    2161 .. 0.78
   7 ?   -0.9   0.2       6.2   2.3e+03       8      60 ..    4158    4236 ..    4157    4241 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 7.1
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 Illt +p +GK+ l  +L+++l
  CDO69902.1 319 ILLTSAPSAGKSLLISHLAQLL 340
                 89999*************9986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0027
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvaken 35 
                 IlltG  G+GKt++  +L+++l     + nl+     +
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRRpliSLNLSNQTESS 717
                 99*****************9983345544444444444 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.038
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf....gvnlrdva 32  
                  +l+ G+  +GKt+  ++L++r+g       n+ ++ 
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRTGHrfvrINNHEHTD 1150
                  79******************9844455533333333 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.066
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpealdeskrldedkld 58  
                  +ll G  G+GKt++++  ++ lg     vn+ ++    +l  +  p   +++  ++ +   
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRtlkAVNCHQNTETADLIGGLRPI--RNKAAIEAETIR 1468
                  7899************9999885556666666666666666666666..555555555555 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 0.00013
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf.........gvnlrdvakenglllevdpe....aldeskrldedkldklldaleenssaleegknlvidghla 84  
                  ++l G pGvGKt+l  +L++++g           + l d++  + ++++ +p     +  e++r+ ++ + +lld+++ ++++  eg n v+d +  
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMCGHhlcrinlsdQTDLVDLFGSDLPVEGGEPGqfawKDAEFLRALQEGHWVLLDEMNLAPQSVLEGLNAVLDHRGT 1892
                  789******************8667897777775555555555555555555577767888889999998888888888887777777777776655 PP

      AAA_18   85 e 85  
                   
  CDO69902.1 1893 V 1893
                  5 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0057
      AAA_18    2 lltGtpGvGKttlakeLskrlgfgvnlrdvaken 35  
                  +++G+  +GKttl + L+++l  g  l++v  +n
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLL--GKTLQEVSINN 2133
                  79******************9..66555554444 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 6.2
      AAA_18    8 GvGKttlakeLskrlgf............................gvnlrdvakenglllevdpealdeskrldedkldkl 60  
                  G+GK  ++ke++++ ++                            g + +dv  e+g + e+d+e  + s+++ e++l +l
  CDO69902.1 4158 GTGKENVSKEIEDESQVeglqgeaeededveraeegnalemsedfGGKMQDVEEEEGEEGEEDDE--EGSEEEPEEQLGNL 4236
                  89999999999776444555666666666666666667788888888888888888888888888..77777777777665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.3   4.6e+02       4      43 ..     679     715 ..     677     731 .. 0.83
   2 !   13.7   0.0   0.00013     0.049       4      93 ..    1114    1210 ..    1111    1215 .. 0.72
   3 ?    0.7   0.0       1.3   4.9e+02       3      40 ..    1408    1442 ..    1407    1465 .. 0.75
   4 !    9.2   0.0    0.0033       1.2       3      90 ..    1794    1890 ..    1792    1896 .. 0.68
   5 !   11.8   0.0   0.00051      0.19       5      38 ..    2101    2131 ..    2097    2155 .. 0.73
   6 ?    0.7   0.0       1.4   5.1e+02      65     114 ..    3829    3878 ..    3801    3885 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.3
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43 
                 ++++tG   +GKT ++ +l++ l    +  + +nl ++++
  CDO69902.1 679 PILLTGETGTGKTSVVTHLASLLR---RPLISLNLSNQTE 715
                 7899***************95555...8888888887665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00013
      AAA_14    4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe......kllelileklke.......ekktylflDEiqevpe.wekalksl 86  
                  +++i+G+  +GKT  ++ l+++      +++ in  +++d ++   +      +   +++    e       ++  +++lDE   +p+ + +al++l
  CDO69902.1 1114 PVLIEGPTSSGKTSSIEYLAQRTG---HRFVRINNHEHTDIQEYIGTyvsdplTGKLVFK----EgllvralRQGDWIVLDELNLAPTdVLEALNRL 1203
                  799*****************9999...999999988888844332221122211122222....133344677999*********985499****** PP

      AAA_14   87 vdegknl 93  
                  +d++++l
  CDO69902.1 1204 LDDNREL 1210
                  **98664 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1.3
      AAA_14    3 kilvitGaRrvGKTtllkqlikellvkkesilyinldd 40  
                  ++++++G   +GKT +++ +++ l    +    +n+ +
  CDO69902.1 1408 EPVLLVGETGCGKTSVCQLYAEVLG---RTLKAVNCHQ 1442
                  68999***********977765444...5555555555 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0033
      AAA_14    3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderd.............kkladpe.....kllelileklkeekktylflDEiqevpe.we 80  
                  k+++++G   vGKT l+  l++       +   inl d++d                   e       + ++l+ l  ++ ++++lDE+  +p+ + 
  CDO69902.1 1794 KPVMLEGSPGVGKTSLVAALANMCG---HHLCRINLSDQTDlvdlfgsdlpvegG-----EpgqfaWKDAEFLRAL--QEGHWVLLDEMNLAPQsVL 1880
                  8999****************96666...9*********99966665544443331.....0222222234444433..46899******99987345 PP

      AAA_14   81 kalkslvdeg 90  
                  + l+ ++d++
  CDO69902.1 1881 EGLNAVLDHR 1890
                  5566666654 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.00051
      AAA_14    5 lvitGaRrvGKTtllkqlikellvkkesilyinl 38  
                   ++ G++ +GKTtl+++l++ l    +   ++++
  CDO69902.1 2101 AIVNGPKNCGKTTLIRTLANLLG---KTLQEVSI 2131
                  689***************95444...33334433 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 1.4
      AAA_14   65 ktylflDEiqevpewekalkslvdegknldvivtGSnskllskeiatsla 114 
                   +  f D + + +++++  k+l+   ++ +++++GS++++   +i+++l 
  CDO69902.1 3829 ARACFVDAVEQHSRLQELSKRLHMIVEHPRIVASGSAAQDRTVRIKEDLG 3878
                  456899999999999999999998777779*********99988888875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       7.3   2.7e+03       7      43 ..     306     340 ..     298     346 .. 0.71
   2 !    9.6   0.0    0.0025       0.9      10      43 ..     666     701 ..     657     707 .. 0.75
   3 ?    3.8   0.0      0.15        55       9      59 ..    1103    1154 ..    1094    1159 .. 0.72
   4 ?    7.5   0.0      0.01       3.8      15      46 ..    1401    1434 ..    1389    1440 .. 0.73
   5 !    8.8   0.0    0.0042       1.5      18      46 ..    1790    1820 ..    1775    1827 .. 0.76
   6 ?    5.1   0.0     0.057        21       5      46 ..    2086    2125 ..    2082    2133 .. 0.76
   7 ?   -2.0   0.0       9.1   3.3e+03      91     111 ..    2618    2638 ..    2609    2649 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 7.3
                 HHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   7 tealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 +++++ +l +  +  ilL+    aGK+ l+ +la+ l
  CDO69902.1 306 LRQVALHLST--QLPILLTSAPSAGKSLLISHLAQLL 340
                 3344444433..3349****************99976 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0025
                 HHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  10 lgkklakal..gdvilLeGdLGaGKTtlvrglakal 43 
                 l ++la+a+  ++ ilL+G+ G+GKT  v +la+ l
  CDO69902.1 666 LMARLATAIslAEPILLTGETGTGKTSVVTHLASLL 701
                 44555554444566***************9998765 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.15
                  HHHHHHHHCHTEE.EEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE    9 algkklakalgdv.ilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59  
                  +l++ + +  +++ +l+eG+  +GKT  +  la+  g++  +++    t ++eY
  CDO69902.1 1103 DLARIISA--KRFpVLIEGPTSSGKTSSIEYLAQRTGHRfvRINNHEHTDIQEY 1154
                  44444433..33359*********************998777766555555555 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.01
                  HHCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   15 akal..gdvilLeGdLGaGKTtlvrglakalgve 46  
                  a+al  ++ +lL G+ G+GKT  ++  a+ lg +
  CDO69902.1 1401 ARALrfNEPVLLVGETGCGKTSVCQLYAEVLGRT 1434
                  333344566******************9999865 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0042
                  H..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   18 l..gdvilLeGdLGaGKTtlvrglakalgve 46  
                  +  ++ ++LeG  G+GKT lv +la+ +g++
  CDO69902.1 1790 CqlQKPVMLEGSPGVGKTSLVAALANMCGHH 1820
                  223667********************99986 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.057
                  HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE    5 eetealgkklakalgdvilLeGdLGaGKTtlvrglakalgve 46  
                  +++e+lg+ + +  g + + +G+  +GKTtl+r la+ lg +
  CDO69902.1 2086 SALESLGTCVSN--GWLAIVNGPKNCGKTTLIRTLANLLGKT 2125
                  555666666655..6678999****************99876 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 9.1
                  TSCEEEEETGGGGCCCS-S-C CS
        TsaE   91 eeavvlvEWpekleellpeed 111 
                  + a+ +vEW e++ ++  +++
  CDO69902.1 2618 SLALAVVEWMEQVFSIHDRSS 2638
                  34799*******766554433 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.049        18      21      43 ..     680     702 ..     668     712 .. 0.86
   2 ?    2.0   0.0      0.39   1.4e+02      22     115 ..    1116    1207 ..    1103    1213 .. 0.54
   3 !   13.8   0.1   9.4e-05     0.035      21     135 ..    1410    1586 ..    1398    1616 .. 0.74
   4 ?    6.9   0.0     0.012       4.5      20     112 ..    1795    1887 ..    1785    1895 .. 0.69
   5 ?    3.5   0.0      0.14        50      14      46 ..    2094    2126 ..    2086    2145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.049
      AAA_30  21 avltGpAGtGKttalkalreawe 43 
                  +ltG  GtGKt ++++l+ +++
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLR 702
                 589**************998876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.39
      AAA_30   22 vltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgi..eastiakllkrlk......grarlepgtllivDEagmvdtkqlaallk 110 
                  +++Gp  +GKt +++ l++     g+r + +   +    +++e +g+      + kl              +l++g+ ++ DE  ++ t+ l+al +
  CDO69902.1 1116 LIEGPTSSGKTSSIEYLAQR---TGHRFVRIN--NHEHTDIQEYIGTyvSDPLTGKL----VfkegllV-RALRQGDWIVLDELNLAPTDVLEALNR 1202
                  55555555555555544432...233333222..22223444444421111122333....13334642.567888999999999999999999999 PP

      AAA_30  111 aaeka 115 
                   ++++
  CDO69902.1 1203 LLDDN 1207
                  88774 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 9.4e-05
      AAA_30   21 avltGpAGtGKttalkalreaweaa.g.........grviglAptgkaAkvLa......eelgieastiakllkrlk.................... 81  
                  ++l+G  G GKt + + ++e++ +  +                     A+ ++      +++ iea+ti   +  l+                    
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRTlKavnchqnteT-----------ADLIGglrpirNKAAIEAETIRDAVALLAqcgvsdiaedtsalttaidg 1495
                  689********************99434333333330...........3443333344456666777777666666666677777777777777779 PP

      AAA_30   82 ....................................grarlepgtllivDEagmvdtkqlaallkaaekagakvilv...GDerQlasVeaGg 135 
                                                        +++++g++++ DE++++d + l++l + +e  g +++l+   G ++  ++++a +
  CDO69902.1 1496 llksgsmataqeaslrdmrarlqrlsamfewrdgplV-EAMRNGDVFLLDEISLADDSVLERLNSVLEP-GRTIVLAergGADEEIPAIKASD 1586
                  999999****************************852.567788********************99999.77777654445555566666555 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.012
      AAA_30   20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk...grarlepgtllivDEagmvdtkqlaallkaa 112 
                   ++l+G +G GKt +++al+++  ++  r i l+ +    +  + +l +e+    ++  + +   +  +l++g+ ++ DE+ ++ ++ l+ l + +
  CDO69902.1 1795 PVMLEGSPGVGKTSLVAALANMCGHHLCR-INLSDQTDLVDLFGSDLPVEGGEPGQFAWKDAeflR--ALQEGHWVLLDEMNLAPQSVLEGLNAVL 1887
                  5789****************999887544.456777777777777777777777777744444321..4556677777777777777666665555 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.14
      AAA_30   14 ltsgdrvavltGpAGtGKttalkalreaweaag 46  
                  + s+ ++a+++Gp   GKtt++++l++++ +  
  CDO69902.1 2094 CVSNGWLAIVNGPKNCGKTTLIRTLANLLGKTL 2126
                  457778*******************99987764 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.16        60      19      50 ..     313     344 ..     297     354 .. 0.79
   2 ?    4.3   0.1     0.061        22      22      47 ..     677     702 ..     664     721 .. 0.79
   3 ?    3.0   0.0      0.15        55     109     158 ..    1183    1233 ..    1164    1243 .. 0.85
   4 ?    1.8   0.0      0.36   1.3e+02      25      49 ..    1410    1434 ..    1392    1479 .. 0.82
   5 !    9.4   0.0    0.0017      0.64     107     204 ..    1537    1636 ..    1524    1639 .. 0.80
   6 ?    3.2   0.0      0.13        49      24      45 ..    1795    1816 ..    1780    1827 .. 0.85
   7 ?   -1.7   0.0       4.2   1.5e+03     110     162 ..    1867    1920 ..    1861    1944 .. 0.82
   8 ?    2.7   0.0      0.19        71      25      56 ..    2101    2132 ..    2082    2149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
  Mg_chelatase  19 aaGgHnlllvGppGsGKtmlakrlpsllppls 50 
                    + +  +ll+ +p +GK++l++ l++ll p  
    CDO69902.1 313 LSTQLPILLTSAPSAGKSLLISHLAQLLYPQV 344
                   45566799******************997755 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.061
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllp 47 
                      +ll+G  G+GKt + + l+sll 
    CDO69902.1 677 AEPILLTGETGTGKTSVVTHLASLLR 702
                   4579******************9995 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.15
  Mg_chelatase  109 vLfLDElpefkrkvlevLRePled.gevtisrakakvefparfqlvaamNp 158 
                     ++LDEl    ++vle+L + l+d +e++i  +++ v+   +f+l a+ Np
    CDO69902.1 1183 WIVLDELNLAPTDVLEALNRLLDDnRELVIPETQEVVRPHPHFMLFATQNP 1233
                    579*******************87257888888888988899********9 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.36
  Mg_chelatase   25 lllvGppGsGKtmlakrlpsllppl 49  
                    +llvG  G+GKt + +  +++l + 
    CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRT 1434
                    89**********9998888887654 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0017
  Mg_chelatase  107 nG.vLfLDElpefkrkvlevLRePledgevti..srakakvefpa.....rfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldRi 193 
                    nG v++LDE++  + +vle L + le g+  +  +r  a+ e pa     +f++va+mNp   g++++ke     s++ ++r+++    p+ dR 
    CDO69902.1 1537 NGdVFLLDEISLADDSVLERLNSVLEPGRTIVlaERGGADEEIPAikasdDFKFVATMNP--GGDYGKKE----LSPALRNRFTEIWVPPITDRR 1625
                    4437889*******************9875442268888889998666667********8..58888554....578899999999999****** PP

  Mg_chelatase  194 dlqvevkklea 204 
                    dl+  v++l +
    CDO69902.1 1626 DLECIVETLWQ 1636
                    *9999887655 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.13
  Mg_chelatase   24 nlllvGppGsGKtmlakrlpsl 45  
                     ++l G+pG GKt l ++l+++
    CDO69902.1 1795 PVMLEGSPGVGKTSLVAALANM 1816
                    589************9998775 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 4.2
  Mg_chelatase  110 LfLDElpefkrkvlevLRePled.gevtisrakakvefparfqlvaamNpcpcg 162 
                    ++LDE+    ++vle L   l++ g+v i    +++    +f + aa Np   g
    CDO69902.1 1867 VLLDEMNLAPQSVLEGLNAVLDHrGTVYIPELGRSFVRHPSFRIFAAQNPLHQG 1920
                    579******************863789999887777666679999999997766 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.19
  Mg_chelatase   25 lllvGppGsGKtmlakrlpsllpplseeeale 56  
                     ++ Gp  +GKt l++ l++ll +  +e +++
    CDO69902.1 2101 AIVNGPKNCGKTTLIRTLANLLGKTLQEVSIN 2132
                    5789******************9877665554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       2.8     1e+03      18      39 ..     323     344 ..     306     364 .. 0.76
   2 ?    6.7   0.0     0.027        10       7      36 ..     673     702 ..     668     805 .. 0.84
   3 !    8.2   0.0    0.0089       3.2      12      37 ..    1408    1433 ..    1403    1519 .. 0.80
   4 ?    3.6   0.0      0.23        86      12      34 ..    1794    1816 ..    1786    1836 .. 0.84
   5 !   11.3   0.1     0.001      0.37       4      51 ..    2091    2139 ..    2088    2167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 2.8
                 ESTTSSHHHHHHHHTTSS--SE CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  18 GenGaGKStLlkllagllkpte 39 
                     aGKS L++ la+ll p+ 
  CDO69902.1 323 SAPSAGKSLLISHLAQLLYPQV 344
                 55669************99974 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.027
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllk 36 
                  ++  e + ++Ge+G+GK++++  la ll+
  CDO69902.1 673 AISLAEPILLTGETGTGKTSVVTHLASLLR 702
                 577788899***************999876 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0089
                  SEEEEEESTTSSHHHHHHHHTTSS-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   12 ekvaivGenGaGKStLlkllagllkp 37  
                  e v +vGe+G+GK+++++l a+ l  
  CDO69902.1 1408 EPVLLVGETGCGKTSVCQLYAEVLGR 1433
                  6789************9987766655 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.23
                  SEEEEEESTTSSHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   12 ekvaivGenGaGKStLlkllagl 34  
                  + v + G+ G GK++L+++la++
  CDO69902.1 1794 KPVMLEGSPGVGKTSLVAALANM 1816
                  568899*************9976 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.001
                  EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran    4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke 51  
                  +   +++g +  + G+  +GK+tL+++la+ll +t  e+ ++  +d ++
  CDO69902.1 2091 LGTCVSNGWLAIVNGPKNCGKTTLIRTLANLLGKTLQEVSINnATDATD 2139
                  55678899999999********************999999984444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.037        14       1      24 [.     680     703 ..     680     721 .. 0.83
   2 ?    1.2   0.0       1.3   4.9e+02       1      26 [.    1115    1140 ..    1115    1160 .. 0.81
   3 ?    5.7   0.0     0.054        20       1      25 [.    1410    1434 ..    1410    1448 .. 0.76
   4 ?    6.2   0.0     0.037        14       1      26 [.    1796    1821 ..    1796    1863 .. 0.89
   5 ?    8.0   0.0      0.01       3.7       3      28 ..    2103    2128 ..    2101    2141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.037
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   i+l+G++g+GK++++++La+ l +
    CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRR 703
                   6899*************9987765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 1.3
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    +++ Gp+  GK++ +++La++   ++
    CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRTGHRF 1140
                    5789***************9987666 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.054
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkk 25  
                    ++l+G++g+GK+++++  a+ l ++
    CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRT 1434
                    5799***********9855555544 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.037
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    ++l G++g+GK++l+  La+    +l
    CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMCGHHL 1821
                    6799*************999888777 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.01
  RNA_helicase    3 lyGpsgeGKStlakeLakallkklkl 28  
                    + Gp+++GK+tl+++La+ l k+l++
    CDO69902.1 2103 VNGPKNCGKTTLIRTLANLLGKTLQE 2128
                    78***************999988743 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.77   2.8e+02      92     161 ..     281     349 ..     269     353 .. 0.74
   2 !    8.7   0.0    0.0022       0.8     118     150 ..     666     698 ..     631     707 .. 0.82
   3 !   11.6   0.0   0.00029      0.11     106     154 ..    1089    1137 ..    1082    1189 .. 0.79
   4 ?   -0.6   0.0       1.5   5.6e+02     125     146 ..    1403    1424 ..    1383    1437 .. 0.75
   5 ?   -0.7   0.0       1.6   5.8e+02     112     156 ..    1777    1820 ..    1721    1829 .. 0.88
   6 ?    3.7   0.1     0.074        27     117     157 ..    2086    2128 ..    2062    2143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.77
       T2SSE  92 alviRkksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks.deriv 161
                  l +R++++ ++  + +    a+++  + +l+ +  ++  il++ + + GK+ l+  l + +  + +++iv
  CDO69902.1 281 VLMLRSSASTDMAPQLIDTPTAVQALRQVALHLS--TQLPILLTSAPSAGKSLLISHLAQLLYPQvQNCIV 349
                 4677877777777766666666666666667766..99****************99999888766466665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0022
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttllyall 150
                 + + l++a++    il++G Tg+GKt ++  l 
  CDO69902.1 666 LMARLATAISLAEPILLTGETGTGKTSVVTHLA 698
                 556688999999**************8776554 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00029
       T2SSE  106 ddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkein 154 
                  +d+++++++++k+ ++ r   ++r  +l+ G+T+sGKt ++  l +   
  CDO69902.1 1089 EDYIMTPSVEAKLIDLARIISAKRFPVLIEGPTSSGKTSSIEYLAQRTG 1137
                  67888888887776665555556***************99977766554 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.5
       T2SSE  125 avrerglilvsGgTgsGKttll 146 
                  a+r +  +l+ G Tg GKt + 
  CDO69902.1 1403 ALRFNEPVLLVGETGCGKTSVC 1424
                  5566678999*********865 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.6
       T2SSE  112 ealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                  +++++++ +v+r+  + ++ +++ G  g GKt l+ al ++  ++
  CDO69902.1 1777 PTTRDNVMRVVRAC-QLQKPVMLEGSPGVGKTSLVAALANMCGHH 1820
                  45668888899888.999**************9999888776555 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.074
       T2SSE  117 kiaevlrkavrerglilvsGgTgsGKttllyallkeinks..d 157 
                     e l + v++  l +v G+   GKttl+ +l + + k+  +
  CDO69902.1 2086 SALESLGTCVSNGWLAIVNGPKNCGKTTLIRTLANLLGKTlqE 2128
                  5567788889999999****************99999887433 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.002      0.72       7      43 ..     663     699 ..     657     720 .. 0.85
   2 ?    2.0   0.0      0.58   2.1e+02      17      47 ..    1108    1138 ..    1100    1171 .. 0.80
   3 !   13.3   0.0   0.00019     0.069       5      57 ..    1391    1443 ..    1388    1455 .. 0.86
   4 ?    0.4   0.0       1.8   6.4e+02      16      47 ..    1788    1819 ..    1783    1868 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.002
                      HHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC-- CS
  Sigma54_activ_2   7 iqelkerLeqaaqsklpvfltGekGsgkelvArlLhk 43 
                       + l  rL+ a +   p++ltGe G+gk++v   L++
       CDO69902.1 663 ATSLMARLATAISLAEPILLTGETGTGKTSVVTHLAS 699
                      577899************************9888876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.58
                       HHT-SS-EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2   17 aaqsklpvfltGekGsgkelvArlLhknsgp 47  
                       ++++ +pv++ G+  sgk++  ++L++  g 
       CDO69902.1 1108 ISAKRFPVLIEGPTSSGKTSSIEYLAQRTGH 1138
                       67899*******************9988776 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.00019
                       HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHH CS
  Sigma54_activ_2    5 aaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverl 57  
                       +a+q+l+   + a + + pv+l+Ge G+gk++v +l ++  g+ l+ +++++ 
       CDO69902.1 1391 SAMQRLFVLTARALRFNEPVLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQN 1443
                       6788898888999999*********************9999999999888554 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.8
                       HHHT-SS-EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2   16 qaaqsklpvfltGekGsgkelvArlLhknsgp 47  
                        a q + pv l G +G gk++   +L++  g 
       CDO69902.1 1788 RACQLQKPVMLEGSPGVGKTSLVAALANMCGH 1819
                       5678899*************999898887655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.042        15      45      88 ..     316     359 ..     301     372 .. 0.77
   2 ?    1.9   0.0       0.5   1.8e+02      21      69 ..     657     701 ..     649     723 .. 0.78
   3 ?    2.2   0.0       0.4   1.5e+02      45      78 ..    1112    1145 ..    1098    1154 .. 0.80
   4 ?    5.0   0.0     0.056        21      48      74 ..    1410    1436 ..    1393    1448 .. 0.80
   5 !   11.9   0.0   0.00042      0.15      47      77 ..    2100    2130 ..    2085    2154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.042
       Rad17  45 kr.iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnq 88 
                 +  iLL s Ps  gks  +  L++ l +++++ + p+ l +++  
  CDO69902.1 316 QLpILLTSAPS-AGKSLLISHLAQLLYPQVQNCIVPIHLADTSLD 359
                 33377777777.7*************************9999865 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.5
       Rad17  21 lavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskel 69 
                  a+hk   + + +   a +L +     +L++G +G gk+ vv  L+  l
  CDO69902.1 657 FAMHKPATSLMARLATAISLAEP----ILLTGETGTGKTSVVTHLASLL 701
                 67777777777777777777776....789*************999776 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.4
       Rad17   45 kriLLisGPsGCgkstvvkvLskelgiklrewln 78  
                  +  +Li GP+  gk+  ++ L++  g ++    n
  CDO69902.1 1112 RFPVLIEGPTSSGKTSSIEYLAQRTGHRFVRINN 1145
                  44589******************99998876555 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.056
       Rad17   48 LLisGPsGCgkstvvkvLskelgiklr 74  
                  +L+ G +GCgk+ v +  +  lg  l+
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRTLK 1436
                  6889***************99998776 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00042
       Rad17   47 iLLisGPsGCgkstvvkvLskelgiklrewl 77  
                  + ++ GP  Cgk+t ++ L+  lg  l+e +
  CDO69902.1 2100 LAIVNGPKNCGKTTLIRTLANLLGKTLQEVS 2130
                  55789**********************9975 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.15        54       2      26 ..     319     343 ..     318     350 .. 0.83
   2 ?    4.4   0.2      0.11        40       2      21 ..     680     699 ..     679     708 .. 0.88
   3 !    9.6   0.0    0.0027         1       2      27 ..    1115    1141 ..    1114    1166 .. 0.73
   4 !    8.2   0.0    0.0072       2.6       2      24 ..    1796    1819 ..    1795    1826 .. 0.87
   5 ?    5.5   0.0     0.051        18       4      30 ..    2103    2129 ..    2100    2144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.15
      AAA_28   2 ivitGgestGKTtlleaLaargypv 26 
                 i +t ++s+GK+ l+++La+  yp 
  CDO69902.1 319 ILLTSAPSAGKSLLISHLAQLLYPQ 343
                 678889*************976654 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.11
      AAA_28   2 ivitGgestGKTtlleaLaa 21 
                 i +tG  +tGKT+++ +La+
  CDO69902.1 680 ILLTGETGTGKTSVVTHLAS 699
                 789***************96 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0027
      AAA_28    2 ivitGgestGKTtlleaLaar.gypvv 27  
                  + i G+ s+GKT+ +e La+r g++ v
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRtGHRFV 1141
                  6899***************87755544 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0072
      AAA_28    2 ivitGgestGKTtlleaLaar.gy 24  
                  +++ G ++ GKT+l++aLa++ g+
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMcGH 1819
                  6789***************87654 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.051
      AAA_28    4 itGgestGKTtlleaLaargypvvpEa 30  
                  + G+  +GKTtl++ La+   ++++E+
  CDO69902.1 2103 VNGPKNCGKTTLIRTLANLLGKTLQEV 2129
                  669999***********9755555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.51   1.9e+02       2      25 ..     680     705 ..     680     798 .. 0.60
   2 ?    5.4   0.0      0.05        18       2      32 ..    1115    1147 ..    1115    1217 .. 0.72
   3 ?    2.7   0.0      0.36   1.3e+02       2      38 ..    1410    1450 ..    1410    1497 .. 0.78
   4 !    8.1   0.0    0.0075       2.7       2      30 ..    1796    1826 ..    1796    1880 .. 0.85
   5 ?    3.6   0.0      0.18        67       1      24 [.    2100    2123 ..    2100    2252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.51
      AAA_33   2 vllvGlpGsGKstlaerllkklg..a 25 
                 +ll G  G+GK+ ++++l+  l    
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRrpL 705
                 578899***********987666442 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.05
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdt 32  
                  vl+ G+  sGK+  +e l++++g  +v+++  +
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRTGhrFVRINNHE 1147
                  6899*******************9999999776 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.36
      AAA_33    2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlf 38  
                  vllvG  G+GK+ + + +++ lg    av   ++t+   l 
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGrtlkAVNCHQNTETADLI 1450
                  799*************9999999777666666666555555 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0075
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllss 30  
                  v+l G pG+GK+ l+  l++  g   ++++ 
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMCGhhLCRINL 1826
                  799***************9998888777764 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.18
      AAA_33    1 lvllvGlpGsGKstlaerllkklg 24  
                  l ++ G++ +GK+tl++ l++ lg
  CDO69902.1 2100 LAIVNGPKNCGKTTLIRTLANLLG 2123
                  56899**************97766 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       4.4   1.6e+03      35      55 ..     679     699 ..     670     708 .. 0.84
   2 !    8.8   0.0    0.0034       1.3      34      85 ..    1408    1459 ..    1389    1470 .. 0.84
   3 ?    1.2   0.0      0.73   2.7e+02      78     126 ..    1531    1579 ..    1506    1617 .. 0.77
   4 !    7.3   0.0    0.0099       3.6      35      60 ..    1795    1820 ..    1779    1835 .. 0.84
   5 ?    4.9   0.0     0.053        19      37      86 ..    2102    2148 ..    2099    2154 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.4
      RuvB_N  35 hvllyGpPGlGkttlakiiak 55 
                  +ll+G  G Gkt++ + +a+
  CDO69902.1 679 PILLTGETGTGKTSVVTHLAS 699
                 58************9888776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0034
      RuvB_N   34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleek 85  
                  + vll+G  G Gkt+++++ a+ lg +lk+       +++dl++ l  +++k
  CDO69902.1 1408 EPVLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQNTETADLIGGLRPIRNK 1459
                  569***************************9999999999999888777665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.73
      RuvB_N   78 lltnleekdvlfideihrlsraveevlysamedfrldivigkGpsarsi 126 
                  l+  ++++dv+++dei   + +v e l s +e  r  ++ ++G + + i
  CDO69902.1 1531 LVEAMRNGDVFLLDEISLADDSVLERLNSVLEPGRTIVLAERGGADEEI 1579
                  5678999*************************99988888888766555 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0099
      RuvB_N   35 hvllyGpPGlGkttlakiiakelgvk 60  
                   v+l G+PG+Gkt+l + +a+  g +
  CDO69902.1 1795 PVMLEGSPGVGKTSLVAALANMCGHH 1820
                  599**************999987765 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.053
      RuvB_N   37 llyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleekd 86  
                  ++ Gp   Gkttl + +a+ lg +l+  s   +++a+d + +l ++ee+d
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGKTLQEVS---INNATDATDILGSFEETD 2148
                  6789*********************9988...777777777888777777 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0052       1.9       2      26 ..     679     703 ..     678     708 .. 0.91
   2 ?    3.5   0.0      0.16        60       2      18 ..    1409    1425 ..    1408    1439 .. 0.83
   3 !    8.1   0.0    0.0063       2.3       2      22 ..    1795    1815 ..    1794    1823 .. 0.89
   4 ?    4.1   0.0      0.11        39       4      26 ..    2102    2124 ..    2100    2130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                 +++l+Ge G GKT  + +la+++++
  CDO69902.1 679 PILLTGETGTGKTSVVTHLASLLRR 703
                 689******************9986 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.16
                  CEEEEC-TTTCHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlq 18  
                  +v+l Ge G+GKT   q
  CDO69902.1 1409 PVLLVGETGCGKTSVCQ 1425
                  699**********8654 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0063
                  CEEEEC-TTTCHHHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqklal 22  
                  +v+l+G +G+GKT L++ la 
  CDO69902.1 1795 PVMLEGSPGVGKTSLVAALAN 1815
                  689**************9986 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.11
                  EEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT    4 ilqGeaGsGKTtLlqklalawae 26  
                  i++G+  +GKTtL++ la ++ +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGK 2124
                  89****************99876 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.2   1.9e+03      27      48 ..     680     702 ..     674     717 .. 0.77
   2 ?    1.8   0.0      0.34   1.2e+02      12      66 ..    1100    1154 ..    1091    1158 .. 0.87
   3 !   14.9   0.0   3.3e-05     0.012      26      90 ..    1409    1476 ..    1387    1520 .. 0.76
   4 ?    0.1   0.0       1.1   4.1e+02      84     112 ..    1539    1567 ..    1531    1587 .. 0.83
   5 ?    3.3   0.0      0.12        43      12      65 ..    1782    1834 ..    1778    1842 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.2
       AAA_8  27 aLlvGvgGsGrqsl.tkLAafia 48 
                 +Ll G  G+G+ s+ t+LA+ + 
  CDO69902.1 680 ILLTGETGTGKTSVvTHLASLLR 702
                 6999********97267887664 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.34
       AAA_8   12 hlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekef 66  
                   l+ ++R+++ +r  +L+ G   sG+ s ++  a  +++++++i+ +++ + +e+
  CDO69902.1 1100 KLIDLARIISAKRFPVLIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEHTDIQEY 1154
                  678899*********************9999888888999999998888887776 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 3.3e-05
       AAA_8   26 haLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqk...evvfllsd 90  
                   +LlvG  G+G+ s+++L a +++ +l  ++++++ ++++    l+ + +ka+i+ +   + v ll++
  CDO69902.1 1409 PVLLVGETGCGKTSVCQLYAEVLGRTLKAVNCHQNTETADLIGGLRPIRNKAAIEAEtirDAVALLAQ 1476
                  489**************************************************998744445555554 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.1
       AAA_8   84 vvfllsdnqiieesfledinnlLntGevp 112 
                   vfll++  ++++s+le +n++L+ G   
  CDO69902.1 1539 DVFLLDEISLADDSVLERLNSVLEPGRTI 1567
                  69**********************99865 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.12
       AAA_8   12 hlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykeke 65  
                   ++r++R  + ++  ++l G  G G+ sl+   a +++++l +i+++ + +  +
  CDO69902.1 1782 NVMRVVRACQLQK-PVMLEGSPGVGKTSLVAALANMCGHHLCRINLSDQTDLVD 1834
                  5677777776665.57888************99************999877655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.36   1.3e+02      24      50 ..     318     344 ..     304     347 .. 0.80
   2 ?    6.9   0.1     0.014         5      20      46 ..     675     701 ..     668     714 .. 0.77
   3 ?   -0.3   0.0       2.5   9.2e+02      25      37 ..    1115    1127 ..    1106    1131 .. 0.82
   4 ?    1.8   0.0      0.57   2.1e+02      20      38 ..    1407    1423 ..    1398    1431 .. 0.80
   5 ?    3.8   0.0      0.13        48      25      55 ..    1796    1825 ..    1785    1830 .. 0.75
   6 ?    3.8   0.1      0.13        47      23      58 ..    2098    2135 ..    2093    2138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.36
      AAA_29  24 atlltGpsGsGKSTllDAiqalLvpak 50 
                  +llt +  +GKS l+  ++ lL+p+ 
  CDO69902.1 318 PILLTSAPSAGKSLLISHLAQLLYPQV 344
                 68999999*****************85 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.014
      AAA_29  20 dlkgatlltGpsGsGKSTllDAiqalL 46 
                 +l++ +lltG++G+GK++++  ++ lL
  CDO69902.1 675 SLAEPILLTGETGTGKTSVVTHLASLL 701
                 555678************996666665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.5
      AAA_29   25 tlltGpsGsGKST 37  
                  +l+ Gp+ sGK++
  CDO69902.1 1115 VLIEGPTSSGKTS 1127
                  79*********87 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.57
      AAA_29   20 dlkgatlltGpsGsGKSTl 38  
                  +  + +ll+G++G GK+++
  CDO69902.1 1407 N--EPVLLVGETGCGKTSV 1423
                  4..458**********986 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.13
      AAA_29   25 tlltGpsGsGKSTllDAiqalLvpakkvrfN 55  
                  ++l G  G+GK++l+ A  a +++++  r N
  CDO69902.1 1796 VMLEGSPGVGKTSLV-AALANMCGHHLCRIN 1825
                  7899***********.555556666655555 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.13
      AAA_29   23 g.atlltGpsGsGKSTllDAiqalLvpak.kvrfNkaa 58  
                  g   ++ Gp   GK+Tl+  ++ lL  +  +v+ N+a 
  CDO69902.1 2098 GwLAIVNGPKNCGKTTLIRTLANLLGKTLqEVSINNAT 2135
                  5567889***********99999986655678888876 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0      0.01       3.7      53      76 ..     677     700 ..     667     712 .. 0.84
   2 ?   -3.1   0.0       9.8   3.6e+03      56      92 ..    1115    1151 ..    1111    1154 .. 0.84
   3 ?    5.3   0.0     0.026       9.7      55      89 ..    1409    1442 ..    1397    1461 .. 0.82
   4 !    6.9   0.0    0.0086       3.2      54      84 ..    1794    1824 ..    1776    1837 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.01
      DUF815  53 annvLLwGarGtGKSslvkallne 76 
                 a+ +LL+G+ GtGK s+v  l + 
  CDO69902.1 677 AEPILLTGETGTGKTSVVTHLASL 700
                 889***************987765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.8
      DUF815   56 vLLwGarGtGKSslvkallneyaeegLrlievekedl 92  
                  vL+ G   +GK s +  l +++ ++ +r+ + e++d+
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEHTDI 1151
                  8999999*************99999998866666665 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.026
      DUF815   55 nvLLwGarGtGKSslvkallneyaeegLrlievek 89  
                   vLL+G+ G+GK s+++ l +e+  ++L+ ++ ++
  CDO69902.1 1409 PVLLVGETGCGKTSVCQ-LYAEVLGRTLKAVNCHQ 1442
                  59***********9886.67788888888888766 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0086
      DUF815   54 nnvLLwGarGtGKSslvkallneyaeegLrl 84  
                  + v+L G+ G+GK slv al n + ++  r+
  CDO69902.1 1794 KPVMLEGSPGVGKTSLVAALANMCGHHLCRI 1824
                  569**************99998877766555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       6.4   2.3e+03       8      34 ..     314     340 ..     307     351 .. 0.82
   2 !    9.7   0.1    0.0027      0.99       8      35 ..     675     702 ..     669     708 .. 0.85
   3 ?    7.8   0.1     0.011         4      10     129 ..    1407    1564 ..    1400    1570 .. 0.71
   4 ?   -1.2   0.0       6.5   2.4e+03      41      82 ..    1649    1703 ..    1627    1726 .. 0.62
   5 ?    5.1   0.0     0.074        27      10      32 ..    1793    1815 ..    1785    1824 .. 0.81
   6 ?   -0.8   0.1       4.8   1.8e+03      13      39 ..    2101    2127 ..    2093    2135 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 6.4
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivall 34 
                 +++ ++l+t  p  GK+ ++ h  +ll
  CDO69902.1 314 STQLPILLTSAPSAGKSLLISHLAQLL 340
                 567799****************99877 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0027
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallv 35 
                 + ++++l+t+  GtGKT v++h  +ll 
  CDO69902.1 675 SLAEPILLTGETGTGKTSVVTHLASLLR 702
                 56789*****************988776 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.011
      AAA_19   10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiH.rlal............................ 77  
                  ++++l+++  G+GKT v +   ++l ++ +    ++   + t      lr   +++  ea+Ti  ++al                            
  CDO69902.1 1407 NEPVLLVGETGCGKTSVCQLYAEVLGRTLKA--VNCHQNTETADLIGGLRPIRNKAAIEAETIRdAVALlaqcgvsdiaedtsalttaidgllksgs 1501
                  67899*********************99954..8898889888888888888878888899998444448888888888888888888888877777 PP

      AAA_19   78 .........ldfddlltealelle..eaeeekklqeeellivDEfqdvdelqyrLlkallgek 129 
                            d+  +l+   +++e  +    + ++++++++ DE++  d+   + l+ +l+++
  CDO69902.1 1502 mataqeaslRDMRARLQRLSAMFEwrDGPLVEAMRNGDVFLLDEISLADDSVLERLNSVLEPG 1564
                  776666555333333333333333553334566777889999999998866555555555555 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 6.5
      AAA_19   41 kpeeillvaftgrAakelrerlaalgae.............atTiHrlalldfdd 82  
                  +  e l++a++ rA  +lr+ la +  +                +H+ a+++f d
  CDO69902.1 1649 DFVEWLCAAVNDRAFANLRDILAWIAFSnaaiirnadtlspNAVFHHAAEMTFLD 1703
                  3367899999999999999987555544556666644444444455555555544 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.074
      AAA_19   10 ekvllvtaGpGtGKTrvlkhiva 32  
                  +k++++ + pG GKT ++ +  +
  CDO69902.1 1793 QKPVMLEGSPGVGKTSLVAALAN 1815
                  78999**********99987665 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 4.8
      AAA_19   13 llvtaGpGtGKTrvlkhivallvelgg 39  
                   +v ++  +GKT+++++  +ll ++ +
  CDO69902.1 2101 AIVNGPKNCGKTTLIRTLANLLGKTLQ 2127
                  455555579********9999987764 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.7   6.3e+02      20      44 ..     677     701 ..     671     707 .. 0.88
   2 ?    3.7   0.0      0.13        49      11      45 ..    1104    1137 ..    1098    1209 .. 0.80
   3 ?    0.3   0.0       1.5   5.5e+02      20      44 ..    1407    1431 ..    1399    1446 .. 0.83
   4 !   12.7   0.0   0.00024     0.087      22      47 ..    2100    2125 ..    2086    2146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.7
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienl 44 
                 +e+++++G  g GKt+++ ++++ l
  CDO69902.1 677 AEPILLTGETGTGKTSVVTHLASLL 701
                 57999*************9999877 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.13
    ATPase_2   11 leeilerepneiyfiYGpegsGKtaLlkeiienle 45  
                  l +i++  ++ +++i Gp +sGKt+ +  ++++  
  CDO69902.1 1104 LARIISA-KRFPVLIEGPTSSGKTSSIEYLAQRTG 1137
                  5556655.7899*************9999998873 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.5
    ATPase_2   20 neiyfiYGpegsGKtaLlkeiienl 44  
                  ne++++ G  g+GKt++ +  +e l
  CDO69902.1 1407 NEPVLLVGETGCGKTSVCQLYAEVL 1431
                  7899999********9987766665 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 0.00024
    ATPase_2   22 iyfiYGpegsGKtaLlkeiienledk 47  
                     + Gp+++GKt+L++ +++ l + 
  CDO69902.1 2100 LAIVNGPKNCGKTTLIRTLANLLGKT 2125
                  56789***************998544 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.53   1.9e+02       4      22 ..     680     698 ..     677     705 .. 0.87
   2 !    8.9   0.0    0.0032       1.2       4      20 ..    1410    1426 ..    1407    1448 .. 0.86
   3 ?    2.7   0.0      0.26        94       2      23 ..    1794    1815 ..    1793    1830 .. 0.90
   4 ?    4.1   0.0     0.096        35       5      36 ..    2102    2133 ..    2100    2155 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.53
   PduV-EutP   4 illiGkvgsGKttLtqalk 22 
                 ill G++g+GKt++  +l 
  CDO69902.1 680 ILLTGETGTGKTSVVTHLA 698
                 89***********988775 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0032
   PduV-EutP    4 illiGkvgsGKttLtqa 20  
                  +ll+G++g+GKt+++q 
  CDO69902.1 1410 VLLVGETGCGKTSVCQL 1426
                  89*************95 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.26
   PduV-EutP    2 kkilliGkvgsGKttLtqalkg 23  
                  k ++l G+ g+GKt+L  al +
  CDO69902.1 1794 KPVMLEGSPGVGKTSLVAALAN 1815
                  679**************99986 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.096
   PduV-EutP    5 lliGkvgsGKttLtqalkgeelkYkktqaief 36  
                  ++ G+ ++GKttL ++l +   k  +  +i+ 
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGKTLQEVSINN 2133
                  567999***********985433333333333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.7   6.1e+02      34      54 ..     317     337 ..     296     339 .. 0.86
   2 ?    6.7   0.2     0.014         5      31      54 ..     675     698 ..     662     703 .. 0.89
   3 ?    2.3   0.0      0.29   1.1e+02      33      53 ..    1407    1426 ..    1397    1440 .. 0.80
   4 ?    4.4   0.0     0.069        25      30      54 ..    1790    1814 ..    1761    1819 .. 0.69
   5 ?    5.3   0.0     0.036        13      28      53 ..    2093    2118 ..    2066    2166 .. 0.84
   6 ?   -1.2   0.0       3.5   1.3e+03     129     163 ..    4912    4952 ..    4845    4964 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.7
      AAA_25  34 elallaGapgtGKttlaldla 54 
                   +ll+ ap +GK+ l ++la
  CDO69902.1 317 LPILLTSAPSAGKSLLISHLA 337
                 5689**************998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.014
      AAA_25  31 pagelallaGapgtGKttlaldla 54 
                  + e +ll+G +gtGKt ++++la
  CDO69902.1 675 SLAEPILLTGETGTGKTSVVTHLA 698
                 567889****************98 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.29
      AAA_25   33 gelallaGapgtGKttlaldl 53  
                  +e +ll+G +g+GKt ++ +l
  CDO69902.1 1407 NEPVLLVGETGCGKTSVC-QL 1426
                  6789**********9875.44 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.069
      AAA_25   30 lpagelallaGapgtGKttlaldla 54  
                    +++ ++l G pg+GKt l+  la
  CDO69902.1 1790 CQLQKPVMLEGSPGVGKTSLVAALA 1814
                  3578899*************99987 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.036
      AAA_25   28 gllpagelallaGapgtGKttlaldl 53  
                   ++  g+la++ G+  +GKttl   l
  CDO69902.1 2093 TCVSNGWLAIVNGPKNCGKTTLIRTL 2118
                  456789***************98665 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3.5
      AAA_25  129 dvdaleaaieeveg....vrlvviDplsr.algg.densns 163 
                  d ++l+ +++++e+    v+++v+D+l +  +gg + n+ns
  CDO69902.1 4912 DHERLRTVLRRAEEqrvmVVFIVLDSLHSkRTGGaGANENS 4952
                  4555555555555556789********88433435444443 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.3   8.5e+02      19      46 ..     319     347 ..     314     398 .. 0.72
   2 ?    1.2   0.0      0.52   1.9e+02      19      40 ..     680     701 ..     677     711 .. 0.82
   3 ?    2.0   0.0      0.29   1.1e+02      19      51 ..    1115    1145 ..    1107    1164 .. 0.81
   4 ?    5.9   0.0     0.019       6.9      19      47 ..    1410    1438 ..    1402    1444 .. 0.88
   5 ?    2.1   0.0      0.27     1e+02      19      40 ..    1796    1817 ..    1784    1829 .. 0.81
   6 ?   -2.3   0.0       6.1   2.2e+03      20      49 ..    2102    2131 ..    2100    2134 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.3
  Zeta_toxin  19 illgGqpGAGKselaellkdele.rqgnv 46 
                 ill  +p AGKs l++ l++ l  + +n+
  CDO69902.1 319 ILLTSAPSAGKSLLISHLAQLLYpQVQNC 347
                 78899999999999999888776444444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.52
  Zeta_toxin  19 illgGqpGAGKselaellkdel 40 
                 ill G +G GK+++ + l+  l
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLL 701
                 89************99887766 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.29
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrldp 51  
                  +l+ G + +GK++ +e+l++++  + ++vr++ 
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRT--GHRFVRINN 1145
                  6888999**************9..9******86 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.019
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvv 47  
                  +ll+G +G+GK+++ +l ++ l+r+ ++v
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGRTLKAV 1438
                  79****************99998877777 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.27
  Zeta_toxin   19 illgGqpGAGKselaellkdel 40  
                  ++l G+pG GK++l ++l++  
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMC 1817
                  6799***********9998876 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 6.1
  Zeta_toxin   20 llgGqpGAGKselaellkdelerqgnvvrl 49  
                  ++ G   +GK++l++ l++ l+++ + v +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGKTLQEVSI 2131
                  6778889*********99988777666666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.13        48      89     121 ..     666     699 ..     646     714 .. 0.79
   2 ?    1.3   0.0      0.75   2.7e+02     100     120 ..    1408    1428 ..    1385    1444 .. 0.76
   3 ?    7.0   0.0     0.013       4.9      87     121 ..    1780    1815 ..    1769    1830 .. 0.77
   4 ?    2.4   0.1      0.35   1.3e+02      89     132 ..    2087    2131 ..    2076    2136 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.13
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   +++l+++++  + ++l G++G GK++++ +l++
   CDO69902.1 666 LMARLATAISLaEPILLTGETGTGKTSVVTHLAS 699
                  55666666665577899*************9987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.75
                   SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinall 120 
                   + ++lvG++G GK+++    +
   CDO69902.1 1408 EPVLLVGETGCGKTSVCQLYA 1428
                   66899**********987655 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.013
                   HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase   87 kegleelkellkd.ktsvlvGqSGvGKStLinallp 121 
                   ++++ ++ ++++  k ++l G+ GvGK++L+ al++
   CDO69902.1 1780 RDNVMRVVRACQLqKPVMLEGSPGVGKTSLVAALAN 1815
                   45566666666654788999************9986 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.35
                   THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase   89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132 
                   +le+l + +++  ++++ G+   GK+tLi +l++ l    +evs 
   CDO69902.1 2087 ALESLGTCVSNgWLAIVNGPKNCGKTTLIRTLANLLGKTLQEVSI 2131
                   667777777775678889***************999999999885 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021       7.7       4      27 ..     680     703 ..     677     711 .. 0.89
   2 ?    2.4   0.0      0.29     1e+02       4      27 ..    1410    1433 ..    1407    1440 .. 0.83
   3 ?    4.8   0.0     0.051        19       4      25 ..    1796    1817 ..    1793    1827 .. 0.87
   4 ?    1.2   0.1      0.69   2.5e+02       5      34 ..    2102    2131 ..    2099    2138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.021
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                 ill G +G+GKT+ ++ La ll++
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLRR 703
                 89*****************99876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                  EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54    4 illvGlqGaGKTttlaKLaallkk 27  
                  +llvG +G GKT+ +   a++l +
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVLGR 1433
                  79***********99988877755 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.051
                  EEEEESTTSSHHHHHHHHHHHH CS
       SRP54    4 illvGlqGaGKTttlaKLaall 25  
                  ++l G  G+GKT+ +a La+++
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMC 1817
                  89*****************986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.69
                  EEEESTTSSHHHHHHHHHHHHHHTTS-EEE CS
       SRP54    5 llvGlqGaGKTttlaKLaallkkegkkvll 34  
                  ++ G++  GKTt +  La+ll k  ++v +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGKTLQEVSI 2131
                  56688889*************999888776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       7.5   2.8e+03       7      21 ..     324     338 ..     319     350 .. 0.81
   2 ?   -0.5   0.0       3.4   1.3e+03       2      21 ..     680     699 ..     679     801 .. 0.60
   3 ?   -0.8   0.0       4.2   1.5e+03       2      32 ..    1115    1149 ..    1114    1163 .. 0.73
   4 ?   -1.0   0.0       4.9   1.8e+03       2      18 ..    1410    1426 ..    1409    1450 .. 0.78
   5 ?    4.4   0.0       0.1        38       2      21 ..    1796    1815 ..    1795    1830 .. 0.85
   6 ?    7.1   0.1     0.015       5.5       4      22 ..    2103    2124 ..    2100    2147 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 7.5
                 STTSSHHHHHHHHHT CS
    MMR_HSR1   7 rpNvGKStLinaltg 21 
                  p +GKS Li+ l +
  CDO69902.1 324 APSAGKSLLISHLAQ 338
                 699********9976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.4
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 +++ G + +GK++++  l  
  CDO69902.1 680 ILLTGETGTGKTSVVTHLAS 699
                 6799**********999975 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 4.2
                  EEEEESTTSSHHHHHHHHHTS....TEEESSSTTS CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltge....kaivsdkpgt 32  
                  v+i G + +GK++ i  l ++     ++++++  t
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRtghrFVRINNHEHT 1149
                  6788**************87543323466655554 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 4.9
                  EEEEESTTSSHHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLina 18  
                  v++vG +  GK+++ + 
  CDO69902.1 1410 VLLVGETGCGKTSVCQL 1426
                  789**********8765 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.1
                  EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg 21  
                  v++ G p vGK++L+ al +
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALAN 1815
                  6788*************987 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.015
                  EEESTTSSHHHHHHHHHT...S CS
    MMR_HSR1    4 ivGrpNvGKStLinaltg...e 22  
                  + G  N GK+tLi++l +   +
  CDO69902.1 2103 VNGPKNCGKTTLIRTLANllgK 2124
                  6799************974432 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.087        32      44      68 ..     674     698 ..     631     710 .. 0.78
   2 ?    1.5   0.0       0.6   2.2e+02      44      64 ..    1404    1424 ..    1387    1493 .. 0.80
   3 ?    6.7   0.0     0.014       5.3      47      87 ..    1793    1833 ..    1771    1879 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.087
   IstB_IS21  44 iekkenivllGpsGvGKshlaialg 68 
                 i+ +e i+l+G +G+GK+ + + l+
  CDO69902.1 674 ISLAEPILLTGETGTGKTSVVTHLA 698
                 777899***********97665554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.6
   IstB_IS21   44 iekkenivllGpsGvGKshla 64  
                  ++ +e ++l+G +G GK+ + 
  CDO69902.1 1404 LRFNEPVLLVGETGCGKTSVC 1424
                  566899***********9764 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.014
   IstB_IS21   47 kenivllGpsGvGKshlaialgveavraglsvlfvrvedLv 87  
                  ++ ++l G +GvGK+ l +al+    ++  ++     +dLv
  CDO69902.1 1793 QKPVMLEGSPGVGKTSLVAALANMCGHHLCRINLSDQTDLV 1833
                  5678999**************98877777777766666666 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0039       1.4       5      43 ..     683     718 ..     680     896 .. 0.81
   2 ?    2.2   0.0      0.47   1.7e+02       7      22 ..    1801    1816 ..    1796    1832 .. 0.81
   3 ?    1.9   0.0      0.59   2.2e+02       1      26 [.    2100    2125 ..    2100    2213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0039
                 ESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   5 stkGGvGKTtlaanLaralarrglrVllvDaDpqannla 43 
                  +  G+GKT+++++La +l r     + + + +q++++ 
  CDO69902.1 683 TGETGTGKTSVVTHLASLLRR---PLISLNLSNQTESSD 718
                 6889***************98...555555555555555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.47
                  STTSSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxx RF
        CbiA    7 kGGvGKTtlaanLara 22  
                  + GvGKT+l+a+La  
  CDO69902.1 1801 SPGVGKTSLVAALANM 1816
                  569**********975 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.59
                  EEEEESSTTSSHHHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    1 iaiastkGGvGKTtlaanLaralarr 26  
                  +ai+++  + GKTtl  +La +l + 
  CDO69902.1 2100 LAIVNGPKNCGKTTLIRTLANLLGKT 2125
                  578999999*************9984 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.025         9       5      28 ..     680     706 ..     677     748 .. 0.85
   2 ?    1.1   0.0      0.75   2.7e+02       5      22 ..    1410    1427 ..    1407    1476 .. 0.87
   3 ?    2.3   0.0      0.33   1.2e+02       5      22 ..    1796    1813 ..    1793    1836 .. 0.87
   4 ?    1.0   0.0       0.8   2.9e+02       6      25 ..    2102    2120 ..    2097    2139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.025
      AAA_24   5 iliyGpsgiGKTtlakel...gpkplf 28 
                 il++G+ g+GKT+++++l     +pl+
  CDO69902.1 680 ILLTGETGTGKTSVVTHLaslLRRPLI 706
                 89**************99777777776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.75
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  +l++G+ g GKT+++  +
  CDO69902.1 1410 VLLVGETGCGKTSVCQLY 1427
                  799**********99877 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.33
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  +++ G++g+GKT+l++ l
  CDO69902.1 1796 VMLEGSPGVGKTSLVAAL 1813
                  6888**********9987 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.8
      AAA_24    6 liyGpsgiGKTtlakelgpk 25  
                  ++ Gp   GKTtl+++l  +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTL-AN 2120
                  577*************9.33 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.52   1.9e+02      37      56 ..     679     698 ..     657     707 .. 0.82
   2 ?    2.4   0.0      0.24        89      18      60 ..    1096    1137 ..    1089    1152 .. 0.82
   3 ?    5.1   0.0     0.037        13      36      57 ..    1408    1429 ..    1387    1445 .. 0.76
   4 ?   -0.4   0.0       1.7   6.3e+02      39      57 ..    2102    2120 ..    2099    2132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.52
        TniB  37 nlllvGdsnnGKtmivekFa 56 
                  +ll G++ +GKt++v + a
  CDO69902.1 679 PILLTGETGTGKTSVVTHLA 698
                 589*************9876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.24
        TniB   18 eilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhp 60  
                  ++ ++L +L +  ++kr p +l+ G++  GKt+ +e  a++  
  CDO69902.1 1096 SVEAKLIDLARIISAKRFP-VLIEGPTSSGKTSSIEYLAQRTG 1137
                  5678999999999999976.79***********9998887654 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.037
        TniB   36 pnlllvGdsnnGKtmivekFar 57  
                  + +llvG++ +GKt++++ +a+
  CDO69902.1 1408 EPVLLVGETGCGKTSVCQLYAE 1429
                  5689*************99986 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.7
        TniB   39 llvGdsnnGKtmivekFar 57  
                  ++ G+ n+GKt++++  a+
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLAN 2120
                  577***********98766 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.034        13      12      97 ..     299     388 ..     295     421 .. 0.71
   2 ?    4.3   0.1     0.045        17      13      55 ..     661     703 ..     650     722 .. 0.89
   3 ?    2.0   0.0      0.23        84      18      51 ..    1782    1815 ..    1773    1824 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.034
                 SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEE......EEE------------------HCCCTSTTEEEEEE CS
        MeaB  12 rpeakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvav......lavDPsspftGGsilGDklRleelavdegvfiRsl 97 
                 +p+a + l+++  +      + lt  P aGks l+++l++ l  + +   v       ++DP s    Gs +   +R   ++ +egv +R++
  CDO69902.1 299 TPTAVQALRQVALHLSTQLPILLTSAPSAGKSLLISHLAQLLYPQVQNCIVpihladTSLDPRSLL--GSYVSSPTRPGTFEWKEGVLVRAM 388
                 57899999999999999999******************9999876655333212111234444433..566666666666666666666666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.045
                 HHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHC CS
        MeaB  13 peakellerllakaGraqvvGltGvPGaGkstlvealglelrr 55 
                   a++l+ rl +    a+ + ltG  G+Gk  +v +l+  lrr
  CDO69902.1 661 KPATSLMARLATAISLAEPILLTGETGTGKTSVVTHLASLLRR 703
                 56899********************************999886 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.23
                  HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHH CS
        MeaB   18 llerllakaGraqvvGltGvPGaGkstlvealgl 51  
                   + r++  +   + v l G+PG+Gk  lv al+ 
  CDO69902.1 1782 NVMRVVRACQLQKPVMLEGSPGVGKTSLVAALAN 1815
                  55566677777788999************99975 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1      0.03        11       2      24 ..     680     702 ..     679     708 .. 0.91
   2 ?    1.6   0.1      0.62   2.3e+02       2      37 ..    1410    1442 ..    1409    1451 .. 0.77
   3 ?    4.9   0.0     0.059        21       2      24 ..    1796    1818 ..    1795    1825 .. 0.85
   4 ?    2.2   0.1      0.41   1.5e+02       3      25 ..    2102    2124 ..    2101    2132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.03
                 EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellk 24 
                 +++TG+ G+GKt +v  +++ll+
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASLLR 702
                 79***************999986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.62
                  EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEE CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfytee 37  
                  v++ G+ G GKt +++  +e+l   g +++ + +++
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYAEVL---GRTLKAVNCHQ 1442
                  6899****************99...66666666555 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.059
                  EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellk 24  
                  v++ G+pGvGKt lv  +++++ 
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALANMCG 1818
                  6899************9999885 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.41
                  EEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1    3 fiTGppGvGKtTlvkkvlellks 25  
                  ++ Gp   GKtTl++ +++ll +
  CDO69902.1 2102 IVNGPKNCGKTTLIRTLANLLGK 2124
                  688**************999954 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.35   1.3e+02       2      20 ..     680     698 ..     679     710 .. 0.90
   2 ?    4.2   0.0      0.14        50       2      20 ..    1410    1428 ..    1409    1446 .. 0.90
   3 ?    3.5   0.0      0.21        78       2      20 ..    1796    1814 ..    1795    1820 .. 0.87
   4 ?   -0.4   0.0       3.6   1.3e+03       5      21 ..    2104    2120 ..    2101    2143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.35
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 ++l G++g+GKts ++++ 
  CDO69902.1 680 ILLTGETGTGKTSVVTHLA 698
                 7899**********99876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.14
                  EEEESSTTSSHHHHHHCHC CS
         Roc    2 vvlvGdsgvGKtsllkrfv 20  
                  v+lvG++g GKts ++ + 
  CDO69902.1 1410 VLLVGETGCGKTSVCQLYA 1428
                  79***********998775 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.21
                  EEEESSTTSSHHHHHHCHC CS
         Roc    2 vvlvGdsgvGKtsllkrfv 20  
                  v+l G  gvGKtsl+  + 
  CDO69902.1 1796 VMLEGSPGVGKTSLVAALA 1814
                  6888***********9876 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 3.6
                  ESSTTSSHHHHHHCHCT CS
         Roc    5 vGdsgvGKtsllkrfve 21  
                   G ++ GKt+l++ + +
  CDO69902.1 2104 NGPKNCGKTTLIRTLAN 2120
                  5999********99875 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.15        56       3      27 ..     681     705 ..     680     718 .. 0.86
   2 ?    4.0   0.0     0.098        36       5      33 ..    1413    1440 ..    1410    1465 .. 0.80
   3 ?    2.0   0.0      0.42   1.5e+02       4      34 ..    2103    2132 ..    2101    2147 .. 0.77
   4 ?   -1.4   0.0       4.5   1.6e+03      41      87 ..    2534    2578 ..    2520    2595 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.15
         PRK   3 gvagsSGaGkttvarklekifgrek 27 
                  ++g+ G Gkt+v  +l ++++r  
  CDO69902.1 681 LLTGETGTGKTSVVTHLASLLRRPL 705
                 589*****************99765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.098
         PRK    5 agsSGaGkttvarklekifgrekvkaaei 33  
                   g+ G+Gkt+v +   +++gr+ +ka++ 
  CDO69902.1 1413 VGETGCGKTSVCQLYAEVLGRT-LKAVNC 1440
                  6999***************954.554544 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.42
         PRK    4 vagsSGaGkttvarklekifgrekvkaaeie 34  
                  v g+  +Gktt+ r+l +++g ++++ ++i+
  CDO69902.1 2103 VNGPKNCGKTTLIRTLANLLG-KTLQEVSIN 2132
                  568889**************9.555546554 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.5
         PRK   41 ldraekdleleerkrakekevsflspeandfdllyevlkelkegkkv 87  
                  +d+a k  + + r  a  k++++ spea   d   + + + k++ ++
  CDO69902.1 2534 YDSAAKPRHGHSRVTA--KRIDYSSPEARAVDAAHRLIETIKDASTT 2578
                  5555555555555544..599999*******9999999999887764 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       5.7   2.1e+03       1      21 [.     680     700 ..     680     707 .. 0.85
   2 ?    4.9   0.0     0.056        21       2      34 ..    1116    1148 ..    1115    1178 .. 0.81
   3 ?    3.6   0.0      0.14        50       2      26 ..    1797    1821 ..    1796    1833 .. 0.88
   4 ?    3.6   0.0      0.15        53       3      42 ..    2103    2141 ..    2101    2158 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.7
                 EEEEESTTSSHHHHHHHHHCC CS
         dNK   1 ivveGnIgaGKstlvklLskk 21 
                 i + G  g GK+++v+ L+  
  CDO69902.1 680 ILLTGETGTGKTSVVTHLASL 700
                 567899**********99876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.056
                  EEEESTTSSHHHHHHHHHCCSTCEEEE-HHHHC CS
         dNK    2 vveGnIgaGKstlvklLskklgvkvfeEpvdkw 34  
                   +eG+ ++GK++ ++ L++++g  +++  + + 
  CDO69902.1 1116 LIEGPTSSGKTSSIEYLAQRTGHRFVRINNHEH 1148
                  59*******************987776555555 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.14
                  EEEESTTSSHHHHHHHHHCCSTCEE CS
         dNK    2 vveGnIgaGKstlvklLskklgvkv 26  
                   +eG  g+GK++lv  L++ +g + 
  CDO69902.1 1797 MLEGSPGVGKTSLVAALANMCGHHL 1821
                  589****************999765 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.15
                  EEESTTSSHHHHHHHHHCCSTCEEEE-HHHHCCSSSSHHH CS
         dNK    3 veGnIgaGKstlvklLskklgvkvfeEpvdkwtnvqknlL 42  
                  v+G+  +GK+tl+ +L++ lg k+++E+  ++  + + +L
  CDO69902.1 2103 VNGPKNCGKTTLIRTLANLLG-KTLQEVSINNATDATDIL 2141
                  789999*************95.677776666655555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       3.9   1.4e+03       7      19 ..    1416    1428 ..    1411    1451 .. 0.63
   2 ?    5.6   0.0     0.031        11       3      77 ..    1798    1878 ..    1796    1887 .. 0.69
   3 ?    4.3   0.0     0.079        29       9      24 ..    2109    2127 ..    2103    2163 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.9
  Viral_helicase1    7 pGcGKStlirkll 19  
                        GcGK+++++  +
       CDO69902.1 1416 TGCGKTSVCQLYA 1428
                       6888888776544 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
  Viral_helicase1    3 vhGvpGcGKStlirkllrts..liltvnrptaelltegk.......pklpnlsvrtvdsflmalvkstkgkililDEylllhaG 77  
                         G pG GK++l+  l++++  + +++n +   +l + +         +p +  +   +fl al    +g+ ++lDE  l+++ 
       CDO69902.1 1798 LEGSPGVGKTSLVAALANMCghHLCRINLSDQTDLVDLFgsdlpveGGEPGQFAWKDAEFLRALQ---EGHWVLLDEMNLAPQS 1878
                       6799*****************86655555544444444456677665555555566666666664...3788888888888765 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.079
  Viral_helicase1    9 cGKStlirkllrts...li 24  
                       cGK+tlir+l++     l+
       CDO69902.1 2109 CGKTTLIRTLANLLgktLQ 2127
                       ***********99654433 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.019       6.9      23      49 ..     676     702 ..     657     707 .. 0.80
   2 ?    1.7   0.0       0.6   2.2e+02      24      41 ..    1407    1424 ..    1347    1437 .. 0.85
   3 ?   -0.1   0.0       2.3   8.3e+02      22      46 ..    1791    1815 ..    1710    1821 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.019
                 TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierll 49 
                   + +l+  +TGtGKT v ++l+  l+
  CDO69902.1 676 LAEPILLTGETGTGKTSVVTHLASLLR 702
                 5678999*************9998776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.6
                  TSEEEEEESTTSTHHHHH CS
      ResIII   24 dkrglikmaTGtGKTlva 41  
                  ++ +l++ +TG+GKT v+
  CDO69902.1 1407 NEPVLLVGETGCGKTSVC 1424
                  67899**********987 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.3
                  .TTSEEEEEESTTSTHHHHHHHHHH CS
      ResIII   22 krdkrglikmaTGtGKTlvaaklie 46  
                  + +k ++++   G+GKT + a+l+ 
  CDO69902.1 1791 QLQKPVMLEGSPGVGKTSLVAALAN 1815
                  6789999************999876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.092        34      17      42 ..     677     702 ..     664     738 .. 0.75
   2 ?   -0.0   0.0       1.7   6.3e+02      20      41 ..    1115    1136 ..    1100    1153 .. 0.79
   3 ?    2.9   0.0      0.21        77      14      41 ..    1791    1817 ..    1779    1837 .. 0.79
   4 ?    3.6   0.0      0.14        50       4      44 ..    2085    2125 ..    2082    2143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.092
      AAA_11  17 seitliqGPPGtgKTktivellsqll 42 
                  e  l+ G  GtgKT+++++l s l 
  CDO69902.1 677 AEPILLTGETGTGKTSVVTHLASLLR 702
                 4446999***********99999884 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.7
      AAA_11   20 tliqGPPGtgKTktivellsql 41  
                  +li+GP  +gKT+ i +l ++ 
  CDO69902.1 1115 VLIEGPTSSGKTSSIEYLAQRT 1136
                  79*************9999887 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.21
      AAA_11   14 lseseitliqGPPGtgKTktivellsql 41  
                    ++  ++++G PG gKT+ +++l ++ 
  CDO69902.1 1791 QLQK-PVMLEGSPGVGKTSLVAALANMC 1817
                  3344.489**************999876 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.14
      AAA_11    4 dsqreaiksalseseitliqGPPGtgKTktivellsqllsr 44  
                  +s +e++ +++s+  ++++ GP  +gKT+ i  l + l ++
  CDO69902.1 2085 ASALESLGTCVSNGWLAIVNGPKNCGKTTLIRTLANLLGKT 2125
                  566788899999999*************9999999888433 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.8   3.2e+03       1      17 [.    1119    1135 ..    1119    1138 .. 0.92
   2 ?   -0.5   0.0       2.6   9.4e+02       1      18 [.    1800    1817 ..    1800    1826 .. 0.86
   3 ?    7.8   0.1    0.0069       2.5       1      18 [.    2105    2122 ..    2105    2131 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.8
      CLP1_P    1 GpkdsGKSTlarlLlNy 17  
                  Gp+ sGK++ + +L+++
  CDO69902.1 1119 GPTSSGKTSSIEYLAQR 1135
                  99************986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.6
      CLP1_P    1 GpkdsGKSTlarlLlNya 18  
                  G+  +GK++l++ L+N++
  CDO69902.1 1800 GSPGVGKTSLVAALANMC 1817
                  67789***********97 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0069
      CLP1_P    1 GpkdsGKSTlarlLlNya 18  
                  Gpk++GK+Tl+r+L+N +
  CDO69902.1 2105 GPKNCGKTTLIRTLANLL 2122
                  9***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (5011 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1220  (0.0680462); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              49  [number of targets reported over threshold]
# CPU time: 2.89u 0.37s 00:00:03.26 Elapsed: 00:00:00.65
# Mc/sec: 23302.73
//
Query:       CDO69903.1  [L=188]
Description: hypothetical protein BN946_scf184884.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-49  165.8   0.0    6.6e-49  165.7   0.0    1.0  1  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.0   3.7e-53   6.6e-49       7     157 ..       2     178 ..       1     179 [. 0.97

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 3.7e-53
                   E-SSCGGGCHHHHHHHHHH.TTEEEEEEESCHHHHCCHHGGS.....................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT- CS
  Flavoprotein   7 iTGsvaaikalellekLkk.egievqvvltkaAkkfiskeklklaa.................redpilhielrrwadllviaPasantlakianGi 85 
                    TGsva+ika+ ++  L   ++++v+vv+t+a+  f++  ++++                    +dpilhielrrwad+++iaP+san+l+kianG+
    CDO69903.1   2 TTGSVASIKAPLIVADLLAyNNVKVEVVATEASLSFYNIADIEKIGvrvwrdrdewgshgqytLGDPILHIELRRWADVVLIAPCSANSLSKIANGF 98 
                   6***************99989*****************99999988*************************************************** PP

                   -SSHHHHHHHT.HCCTTEEEEE.--HHCCTCSTCHHHHHHH.H.T.....................GHHHHHHHHHHCHH CS
  Flavoprotein  86 adnlltlilra.takkpiliaPamnpamyenpqtlknlekl.e.egvtvikPse.....gdigkgkmaeieeivgkildk 157
                   +dnl+t++lra ++++p++++Pamn+ mye+p t ++l+++ e  g+t+++P+      gd+g+g+m+e+ +iv+ ++d+
    CDO69903.1  99 CDNLATSLLRAlAPTTPTYVFPAMNTLMYEHPLTEQHLRIVrEvIGYTIVGPIGkklacGDVGLGAMTEWRDIVQIVVDR 178
                   ***********9*****************************999*********669*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1305.47
//
Query:       CDO69904.1  [L=406]
Description: hypothetical protein BN946_scf184884.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-15   54.7   7.4        0.1   12.7   0.0    7.1  8  LRR_6     Leucine Rich repeat
    0.00014   21.9   0.1      1e+02    4.1   0.0    5.7  6  LRR_1     Leucine Rich Repeat
     0.0038   17.6   9.1          6    7.4   0.4    5.6  7  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.16   11.7   3.4       0.24   11.1   3.4    1.2  1  BSP_II    Bone sialoprotein II (BSP-II)
       0.22   12.0   0.0       0.42   11.1   0.0    1.4  1  DUF4713   Domain of unknown function (DUF4713)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00037       1.3       3      24 .]      30      51 ..      28      51 .. 0.93
   2 !   10.4   0.0   0.00015      0.55       2      23 ..      91     112 ..      90     113 .. 0.86
   3 !   11.2   0.1   8.4e-05       0.3       3      24 .]     120     141 ..     118     141 .. 0.92
   4 ?   -2.4   0.0       1.9   6.9e+03       5      23 ..     187     205 ..     186     206 .. 0.76
   5 !   12.7   0.0   2.8e-05       0.1       2      19 ..     212     229 ..     211     234 .. 0.90
   6 !    8.2   0.0    0.0008       2.9       5      19 ..     245     259 ..     243     259 .. 0.92
   7 ?   -1.8   0.1       1.2   4.5e+03       3      11 ..     274     282 ..     273     283 .. 0.84
   8 ?   -0.7   0.0      0.57     2e+03      17      23 ..     318     324 ..     317     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00037
       LRR_6  3 thLteLdLsgNdIgDeGaeaLa 24
                t+++e +L gN Ig e a+aLa
  CDO69904.1 30 TKIEEIHLGGNTIGVEAAQALA 51
                7899****************98 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 +++L+e dLs+N +g+  +  L
  CDO69904.1  91 KHTLEEIDLSDNAFGGRSVDPL 112
                 58*************9877665 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 8.4e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 ++L+ L L+ N++g +G++ +a
  CDO69904.1 120 RSLKILRLNNNGLGPAGGTVIA 141
                 79****************9886 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.9
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+e+ +  N+I  +G+++L
  CDO69904.1 187 LQEVRMPQNGIRMAGISSL 205
                 6677776799999999988 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 2.8e-05
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 n+ L +LdL++N + DeG
  CDO69904.1 212 NMDLHHLDLQDNTFADEG 229
                 899**************9 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0008
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 L+ L+Ls++ Ig eG
  CDO69904.1 245 LRQLNLSDCVIGEEG 259
                 999*********988 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 1.2
       LRR_6   3 thLteLdLs 11 
                 t+L++L+L+
  CDO69904.1 274 TKLETLQLQ 282
                 89****996 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 0.57
       LRR_6  17 DeGaeaL 23 
                 DeG++aL
  CDO69904.1 318 DEGVIAL 324
                 9****98 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.7   6.1e+03       1      12 [.      31      42 ..      31      54 .. 0.79
   2 ?    3.7   0.0     0.038   1.3e+02       2      16 ..      94     108 ..      93     115 .. 0.80
   3 ?    4.1   0.0     0.028     1e+02       1      13 [.     121     137 ..     121     153 .. 0.71
   4 ?    1.9   0.0      0.15   5.2e+02       2      12 ..     215     225 ..     214     234 .. 0.85
   5 ?    3.1   0.0     0.062   2.2e+02       2      12 ..     245     255 ..     245     270 .. 0.81
   6 ?   -0.6   0.0      0.95   3.4e+03       1      12 [.     275     286 ..     275     299 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
       LRR_1  1 nLrhLdLsnnpl 12
                + ++++L++n +
  CDO69904.1 31 KIEEIHLGGNTI 42
                578999*99976 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.038
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+++dLs+n ++g +
  CDO69904.1  94 LEEIDLSDNAFGGRS 108
                 9********886655 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.028
       LRR_1   1 nLrhLdLsnnpl....l 13 
                 +L+ L L+nn l    +
  CDO69904.1 121 SLKILRLNNNGLgpagG 137
                 69********9855552 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.15
       LRR_1   2 LrhLdLsnnpl 12 
                 L hLdL +n +
  CDO69904.1 215 LHHLDLQDNTF 225
                 89****99965 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.062
       LRR_1   2 LrhLdLsnnpl 12 
                 Lr L+Ls++ +
  CDO69904.1 245 LRQLNLSDCVI 255
                 899******87 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.95
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L L n +l
  CDO69904.1 275 KLETLQLQNDNL 286
                 799999988887 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.34   1.2e+03       1      14 [.      30      43 ..      30      62 .. 0.73
   2 !    7.4   0.4    0.0017         6       3      36 ..      94     132 ..      92     137 .. 0.66
   3 ?   -1.7   0.0       1.3   4.5e+03       2      15 ..     158     171 ..     157     174 .. 0.78
   4 ?    3.3   0.0     0.034   1.2e+02      18      33 ..     207     223 ..     199     228 .. 0.66
   5 !    6.0   0.3    0.0046        16       3      33 ..     215     253 ..     214     258 .. 0.81
   6 ?    1.5   2.2      0.12   4.3e+02       3      33 ..     245     283 ..     243     294 .. 0.58
   7 ?    2.8   0.3      0.05   1.8e+02       1      26 [.     274     305 ..     274     308 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.34
                SS--EEE--SS--- CS
       LRR_4  1 pnLevLdLsnNqlt 14
                ++ e+++L++N + 
  CDO69904.1 30 TKIEEIHLGGNTIG 43
                56788888888886 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0017
                 --EEE--SS-.....--E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNq.....ltdipl.leklpnLkeLdLsgNnli 36 
                 Le++dLs+N      +  + + l+   +Lk L L +Nn +
  CDO69904.1  94 LEEIDLSDNAfggrsVDPLVPfLSTARSLKILRL-NNNGL 132
                 8899999988454444422222445888999999.66666 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
                 S--EEE--SS---E CS
       LRR_4   2 nLevLdLsnNqltd 15 
                 +L ++ ++ N+l d
  CDO69904.1 158 RLHTIICGRNRLED 171
                 67888888888876 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.034
                 -.HHH-TT--EEE-.-S CS
       LRR_4  18 l.leklpnLkeLdLsgN 33 
                 + l+ + +L++LdL +N
  CDO69904.1 207 GgLAANMDLHHLDLQDN 223
                 44555677888888777 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0046
                 --EEE--SS---E-S-......HH..H-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......le..klpnLkeLdLsgN 33 
                 L +LdL++N   d +       l+  + p L++L+Ls++
  CDO69904.1 215 LHHLDLQDNTFADEGTkrmaaeLNrgSWPLLRQLNLSDC 253
                 789999999999988877766544856999999999886 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.12
                 --EEE--SS---E-S-..HH......H.-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl..le......k.lpnLkeLdLsgN 33 
                 L+ L+Ls++ + + +   +       +  ++L++L L +N
  CDO69904.1 245 LRQLNLSDCVIGEEGEvsPIvealakGlHTKLETLQL-QN 283
                 6777777776665555441133444554566777777.33 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.05
                 SS--EEE--.SS---E-S-..HH....H-TT-- CS
       LRR_4   1 pnLevLdLs.nNqltdipl..le....klpnLk 26 
                 ++Le+L L+ + +l +  +  l+    klp+L+
  CDO69904.1 274 TKLETLQLQnD-NLETEAFslLAgvvdKLPQLR 305
                 68999999944.555333333335555566666 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.4   6.6e-05      0.24     151     235 ..     310     393 ..     304     400 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.6e-05
      BSP_II 151 eeaevdeneqgvngtstnsteaengngssggdngeeeeeesvteaeaegteveeeeeagsaetttspnglfe..attplqeaydttt 235
                 + +evde ++gv +   n+  ++ g    + +++eeeeee   e  a ++ev+ee  a+ a  t++p+      at  +++++d +t
  CDO69904.1 310 QWNEVDEEDEGVIAL-INALRKQGGRVIMNDEDEEEEEEEAADE--AGDKEVAEEAVAEEAVPTVQPTVPAVpaATEAPKAVTDKAT 393
                 557899999999765.5566666555555533333333333333..34555555555555555555543322114555555665555 PP

>> DUF4713  Domain of unknown function (DUF4713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.42       4      32 ..     266     294 ..     264     295 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
     DUF4713   4 esvlqevllkLqslqpfqspwdiaaFvvl 32 
                 e++++ + +kL  lq++++++++ aF+ l
  CDO69904.1 266 EALAKGLHTKLETLQLQNDNLETEAFSLL 294
                 67889999******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2872.04
//
Query:       CDO69905.1  [L=307]
Description: hypothetical protein BN946_scf184884.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-29  102.7   0.0    1.3e-19   71.0   0.0    2.2  2  DUF3605   Protein of unknown function (DUF3605)
  ------ inclusion threshold ------
       0.17   12.6   0.0       0.29   11.9   0.0    1.4  1  HIT       HIT domain


Domain annotation for each model (and alignments):
>> DUF3605  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   1.5e-23   1.3e-19       1      95 [.      36     176 ..      36     187 .. 0.81
   2 !   29.5   0.0   8.7e-11   7.8e-07     106     151 ..     246     288 ..     232     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.5e-23
                 -HHHHHHHHHHT-GGG----HHHHHHHHHHHHHHT...TS-HHHHHHHHHT-.....................STTS...................... CS
     DUF3605   1 tWeevkeiieeneleklkRspsdlrrYlkfkkelkkkygsiveyilkerlkW.................eeleakeel..................... 61 
                 tW+++k+++++++l  lkR ++ ++rY+++ + +++kygs+ +++l+ rl+W                 e       +                     
  CDO69905.1  36 TWKQLKTFVNSGDLGLLKRDKRLQKRYEAWAAGIREKYGSMANFLLNYRLQWgkedtitllrsslddssE-------Qasadldgpaevpeelldpkvp 127
                 7***************************************************887776666655444330.......2445566666667777777777 PP

                 ...............TTSSGGGEEEEE-SS---B-TTEEEEEEEESS-- CS
     DUF3605  62 ...............pfadeedykillNdfPYgleedivHlvvWsktel 95 
                                +   +e y i++Nd+PY++ ++++H ++Ws++++
  CDO69905.1 128 rklpplppnappyfkADMPRELYCITMNDWPYSVPPEVEHSLIWSRVPI 176
                 7777777777664422244789************************987 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 8.7e-11
                 HHHHHHHHHHHHTHHH.....HT-EEEE---TTT-SSTTSEEEEEE CS
     DUF3605 106 eesrakieefvkktfvekleeedkvlwFkNwasLqSvkaveHiHvl 151
                 ++  ++ie+f+k+  +e+   e + +wF N+ +LqSv ++ HiHv+
  CDO69905.1 246 RKYGEEIEKFIKRRWHER---EWETAWFVNPPRLQSVPELTHIHVF 288
                 455689*******99887...4689********************8 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.3e-05      0.29      44      97 ..     238     292 ..     226     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
                 CHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-.EEEEEEC-T CS
         HIT  44 teeelakllsavkkvakalqkkfknkglrvvinngahagqsvahl.HiHviprre 97 
                 teee+ +l++  +++ k ++++ +++  + +  +++   qsv+ l HiHv++rr+
  CDO69905.1 238 TEEEERELRKYGEEIEKFIKRRWHEREWETAWFVNPPRLQSVPELtHIHVFARRK 292
                 589999**************************************88*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2103.46
//
Query:       CDO69906.1  [L=573]
Description: hypothetical protein BN946_scf184884.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-57  195.0   0.4      2e-57  195.0   0.4    2.3  3  Tyrosinase   Common central domain of tyrosinase
    2.5e-29  102.4   0.0    4.6e-29  101.6   0.0    1.4  1  Tyosinase_C  Tyosinase C-terminal domain


Domain annotation for each model (and alignments):
>> Tyrosinase  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.4   2.3e-61     2e-57       3     221 ..      55     299 ..      54     300 .. 0.94
   2 ?   -1.2   0.8      0.23     2e+03      58     107 ..     331     390 ..     321     467 .. 0.49
   3 ?   -1.0   0.1       0.2   1.8e+03      57      67 ..     455     470 ..     425     519 .. 0.70

  Alignments for each domain:
  == domain 1  score: 195.0 bits;  conditional E-value: 2.3e-61
                 SHHHHHHCCSSS--SSTSSSS.........S-TSSTTHHHHHHHHHHHHHHHHHHH...............HHHTHCSEEEB--TSS-....-SS--HH CS
  Tyrosinase   3 sydqlagiHgipftewkeeee.........caHgnalFltWHRaYlllfEqalrei...............cgyapdvtlPYWDwaadksspldespes 77 
                 s++q++giHg+p+  w++  +         c+Hg++lF+tWHR+Y++lfEq l+++               ++ a+++++P+WDwa++    +  +pe 
  CDO69906.1  55 SFFQIGGIHGLPYIAWSGAGAedsaepagyCTHGSVLFPTWHRPYVALFEQVLQKHaaeiaekytvdrprwQKAAAELRQPFWDWARE----TVPPPEV 149
                 8***************888889*******************************9999999*999999966544499************....99***** PP

                 HH-SEEE-TTCCGE-EEEEE-TTT--BESS....SSS-..G-SBTTCTCB-CTS-CGGGGGS-BTCSSHHHHHH.-GGGHHHHH--SHHHHHHHHHH-- CS
  Tyrosinase  78 lggdgatipeenlsggcvisnplakytlkk....klgp..kakgtlkseenklaanprclkrenaelsaelata.ssleellkksesytsfsntlegkk 169
                 ++ d++ti+ ++++ +++++npl +y++++      +p  ++ +tl+++++++ ++++++++ +++l+a+++   s++++ll++ +++ +fsn++ g++
  CDO69906.1 150 ISLDKVTITASDGQ-KKEVDNPLRRYRFHPidpsFPEPysNWSATLRHPTSEGSDAEDNVQDLTKTLKADQPDItSKTYNLLTRVHTWPAFSNHTAGDG 247
                 **************.*************98776633337799*******************************988899******************** PP

                 ------HHHHHHHHHHHHHESSSTTSTTCGGGSTHHHHHHHHHHHHHHHHHH CS
  Tyrosinase 170 skeesalespHnavHvwvGangdmgdvataafDPiFflHHaniDrlwaiWqa 221
                  +++++le++H+++H  vG+ g+mgd+ +a+fDPiFflHH+++Drl a+W a
  CDO69906.1 248 GSSSNSLEAIHDHIHDSVGGGGQMGDPTVAGFDPIFFLHHCQVDRLLALWSA 299
                 **************************************************86 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.23
                 EEB--TSS-..............-SS--HHHH-SEEE-TTCCGE-EEEEE-TTT--BESS CS
  Tyrosinase  58 lPYWDwaad..........ksspldespeslggdgatipeenlsggcvisnplakytlkk 107
                 +P+W+ +++          + s++  s  +++g + +++++ +++  ++ n+l+  +l+k
  CDO69906.1 331 TPFWNTQSTfwnsfqsagvSPSQFGYSYPDFNGLNLQDKNAIRERIAQVVNELYGHRLRK 390
                 577777777665544444433333333333333333333333334444444444444443 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.2
                 EEEB--TSS-...... CS
  Tyrosinase  57 tlPYWDwaad.....k 67 
                 ++ YW+w+a       
  CDO69906.1 455 STEYWEWTARihvkkY 470
                 5569999998554440 PP

>> Tyosinase_C  Tyosinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   5.1e-33   4.6e-29       1     105 [.     460     563 ..     460     568 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 5.1e-33
  Tyosinase_C   1 dwvanvrvekyalggsftihfflGdppedpttwatapnlvGsvavfasaeeegcencqaaskvlvtgqvpLtsaLleragelesldpeeVepyLkknL 98 
                  +w+a+++v+kya+ggsf++ +flG +pe++++w+t+pn+vG ++ f ++ ++ c+nc  + + +++g+v+L++a++e+  + es+dp+ V pyL+++L
   CDO69906.1 460 EWTARIHVKKYAVGGSFSVLLFLGAVPENAADWRTSPNYVGGHHAFVNSMPQRCANCIGQGDLVIEGFVHLNEAIAEH-AHFESFDPAVVSPYLAREL 556
                  8********************************************************99999***************8.667**************** PP

  Tyosinase_C  99 kwrvvka 105
                  +w v+k 
   CDO69906.1 557 HWGVMKV 563
                  ****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4095.69
//
Query:       CDO69907.1  [L=490]
Description: hypothetical protein BN946_scf184884.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-10   39.0   0.0    1.5e-05   24.7   0.1    3.0  2  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.54   10.4   1.7         12    6.0   0.2    3.0  3  TmoB       Toluene-4-monooxygenase system protein B (TmoB)


Domain annotation for each model (and alignments):
>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   5.4e-05      0.48      13      70 ..     274     330 ..     269     331 .. 0.91
   2 !   24.7   0.1   1.7e-09   1.5e-05       3      71 ..     402     488 ..     400     488 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.4e-05
                 EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD  13 vkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidv 70 
                 ++++ k++  +++L  + ++  +i   ++v+L  DG +  p st+ + +i  + ++++
  CDO69907.1 274 WSMRQKRHDNFHQLCAEIADLASIRS-ENVVLSLDGMRVFPSSTPHSVGIWAEAELEA 330
                 566668999*****************.***********************99998885 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.7e-09
                 EEEEESSS-..-EEEEEETTSBHHHHHHHHHHHHT----................TT-EEEETTEE--TTSBGGGSS--TTEEEEEE CS
   Rad60-SLD   3 iilkgkdgk..evkikVkptttvskLieayrkkkgipee................qkvrLiFDGeeLdpnstvedldiedgdtidvv 71 
                 +++++ + k  +++++V p t+   +++++ +k g++++                +  +L  DGe++dp++++++ d+edgd+++vv
  CDO69907.1 402 LFVVSEKTKgrRINLRVLPRTKCGVIVRKFLEKAGLQADyperapvakgrgrgttKVPVLSVDGEKMDPEAQIGEVDLEDGDQVEVV 488
                 56666666666899999999999999999999999999999999999999999855558***************************8 PP

>> TmoB  Toluene-4-monooxygenase system protein B (TmoB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.03   2.7e+02      22      45 ..     214     237 ..     210     245 .. 0.89
   2 ?   -1.3   0.0      0.27   2.4e+03      23      52 ..     400     429 ..     398     451 .. 0.67
   3 ?    6.0   0.2    0.0014        12      51      78 ..     460     488 ..     447     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.03
        TmoB  22 edtmdqVaekvahhavGrrvrpkp 45 
                 +dtmd+++      ++ rrv+++ 
  CDO69907.1 214 DDTMDNIVSDPELASIARRVKAEA 237
                 79******************9876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.27
        TmoB  23 dtmdqVaekvahhavGrrvrpkpgaplrVr 52 
                 +t+  V ek     ++ rv p+    + Vr
  CDO69907.1 400 FTLFVVSEKTKGRRINLRVLPRTKCGVIVR 429
                 677789999999999999999884444444 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0014
        TmoB  51 Vr.rqGevlprsmtvaeaglkpldavevv 78 
                 V+  +Ge+++ ++++ e++l+  d+vevv
  CDO69907.1 460 VLsVDGEKMDPEAQIGEVDLEDGDQVEVV 488
                 544789*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3268.41
//
Query:       CDO69908.1  [L=782]
Description: hypothetical protein BN946_scf184884.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0075   16.2   0.0      0.014   15.3   0.0    1.4  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     8e-07     0.014     109     161 ..     321     373 ..     289     383 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8e-07
  EMP24_GP25L 109 kkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsil 161
                   ++++++l+++  +++  ++++ +eq++l++re+++r+++ +++++  w+s +
   CDO69908.1 321 LTQSMSELTVSHAEHSAAMSKLGEEQRLLEQREKEMREMIAKAEEKRSWFSAF 373
                  48899999999***************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5195.95
//
Query:       CDO69909.1  [L=489]
Description: hypothetical protein BN946_scf184884.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3328.31
//
Query:       CDO69910.1  [L=553]
Description: hypothetical protein BN946_scf184884.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.5    7.6   5.4          9    6.6   5.4    1.5  1  Bombesin  Bombesin-like peptide


Domain annotation for each model (and alignments):
>> Bombesin  Bombesin-like peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.4    0.0005         9       4      12 ..     495     503 ..     492     504 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0005
    Bombesin   4 WAvGHlMGK 12 
                 WAvGH+ GK
  CDO69910.1 495 WAVGHMVGK 503
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3916.52
//
Query:       CDO69911.1  [L=376]
Description: hypothetical protein BN946_scf184884.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-52  177.6   0.0    4.4e-52  177.4   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0   2.5e-56   4.4e-52     149     458 ..      28     349 ..       2     354 .. 0.72

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 2.5e-56
                 HHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSC......HHHHHHHHHHHHHHHHHHH.HHHHHHHCHCHCSCSSCS CS
        p450 149 aldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylpt......kllrklkeavkklkdlldk.lieerretldsakksrrd 240
                 ++ +  + +++  ++ +ed++   +++ +e l +++ +  + ll   pl++ lpt      k+++k+  a k+++dll++  +   +e ++ +   + +
  CDO69911.1  28 FTAAALKAVYNLDISDVEDSRVAIIENIFEGLREVTIS-AQFLLERVPLVQHLPTwtpgigKFFKKVA-ASKAPNDLLMEtEFAAAKERMEASGTVDAS 124
                 45555555555555556666665555555655554422.33344455555555541111115677776.667888876542333333333333223444 PP

                 HHHHHHHHC.TTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCS CS
        p450 241 fldalllak.kekkge.sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpv 337
                  ++ ll+   ++   e ++  +e +a  v  + +++   t st++ +++ ++ +Pevq+k + E++ v+g++r p+++d q+l y +a++kE+LR h+v
  CDO69911.1 125 VVSQLLSRLaQTAGAEdDTHEEEVIASGVAAVAVEALRQTFSTSAGFFAAMVLHPEVQQKAQAELEAVVGQHRLPDFEDKQSLVYINAIVKEILRWHNV 223
                 4444444445333333357888889999*********************************************************************** PP

                 STTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEE CS
        p450 338 vplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFe 434
                 +pl++++++t+d ++rgy+ip+Gt+  + ++a+++dpe++p+P++F peRF ++ +  ++ + + a + FG+G+R C+G+++A+  l++++a++L+ Fe
  CDO69911.1 224 LPLGVSHRTTEDNELRGYFIPQGTMLTPAVWACMHDPEIYPDPDRFYPERFIRNGQldPT-VLDPADFVFGFGRRKCPGRHFAEAALFILIASVLHVFE 321
                 *****************************************************9889765.66666677****************************** PP

                 EEESTSTSGGE...EESSC.SSEEESSS CS
        p450 435 velqpetdppp...ileks.glllppkp 458
                 +  ++++d +p    +e+s g+l  p++
  CDO69911.1 322 IGSPKDEDGRPvklEYEQShGFLSYPEN 349
                 *987665544400033333666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.57
# Mc/sec: 1971.33
//
Query:       CDO69912.1  [L=401]
Description: hypothetical protein BN946_scf184884.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.0   0.4    1.7e-14   53.6   0.4    1.2  1  Pex24p    Integral peroxisomal membrane peroxin


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.4   9.3e-19   1.7e-14       3     197 ..     101     287 ..      99     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 9.3e-19
      Pex24p   3 lsspllssnppqlssrLakifplllildkvlkiltWtnpdk.tlsfllvytficlvpylelvvlplllllfvvmvpaylyrhplrksslikkeesknes 100
                 ls+p+++ n++++ ++ + if l+   d+v +i+ W+ ++k tl  +  y f+c  p l+l+ +p + +l v     +l++hp  ++  +         
  CDO69912.1 101 LSIPITTVNFRRFVAKSGPIFWLQ---DRVEEIVLWKRSWKyTLVWMAGYAFLCYFPRLILL-IPHAAILGV-----LLAMHPAIRKGENL-------- 182
                 8***********************...*********987751566677899*******9999.*********.....45555444444421........ PP

      Pex24p 101 tsegptldea.........skeivlnLrdlqnkmedllnpidalekflkelagfkdenlstllfltllltpililllsrlipwrlillvlg.ailltyH 189
                 ++ +p++ +          s + + nL+ +qn m  +++ +d++ k++  l++++  + ++l f  +l t + ++ ++ l+p+r+++lvlg + + + H
  CDO69912.1 183 DALPPRVVQPmpptqpsegSADWLANLQAIQNLMGAVSDAHDFAVKLVPYLTYSTPYSGTILSF--VLTTFLAMIPIVNLLPVRTTCLVLGlLPFCLTH 279
                 222222222223333345799************************9887777766666666666..55555555555789************9****** PP

      Pex24p 190 psvkkvll 197
                 p v++ l 
  CDO69912.1 280 PFVQNWLI 287
                 *9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 2240.38
//
Query:       CDO69913.1  [L=589]
Description: hypothetical protein BN946_scf184884.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-23   80.7   0.0    1.6e-22   79.9   0.0    1.4  1  DDE_Tnp_4    DDE superfamily endonuclease
    7.3e-06   25.8   0.0    3.9e-05   23.4   0.0    2.0  1  DDE_Tnp_1    Transposase DDE domain
    3.8e-05   23.4   0.0    0.00022   20.9   0.1    2.0  2  Plant_tran   Plant transposon protein
    0.00027   21.2   0.0    0.00058   20.2   0.0    1.5  1  DDE_Tnp_1_2  Transposase DDE domain
  ------ inclusion threshold ------
       0.53   10.1   2.3        1.1    9.1   2.3    1.5  1  UVR          UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   4.4e-26   1.6e-22       1     158 []     363     522 ..     363     522 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 4.4e-26
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklsekllvpykk... 96 
                 +Dgt+i +  +    e++ +  n+k+  + ++l++++ +  + +v  g++Gsv D +++++ + +      +++g++ l+D+gF++ + llvpy++   
  CDO69913.1 363 MDGTHIACAPSL---EERPASRNRKGGVSQNCLACCSFDLLFQHVLSGWEGSVADATLFADARQHSLP---IPEGKIYLGDAGFPMCDVLLVPYRGvry 455
                 7*******8866...5889999****************************************999883...6899*************99****99*** PP

   DDE_Tnp_4  97 ......kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                       + +++  ++++ fn ++asar +vEr++g lk+rf+il  + + + +   ++i+ ++c++hN
  CDO69913.1 456 hlaewgRAEARPMNAQELFNLRHASARNVVERIFGILKRRFKILTIPCEFS-MAVQARILPALCAIHN 522
                 ******9999999*******************************9999999.99999**********9 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.1e-08   3.9e-05       5     211 ..     359     519 ..     356     521 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.1e-08
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygy.klhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr.kgklvlaDaGYas........aell 92 
                  v ++D+t++    +  + r+ +++++ k g+   ++a+     l+ +v     g+v+d + + +  ++  p+ +gk++l+DaG+          +   
  CDO69913.1 359 VVGAMDGTHIACAPSL-EERP-ASRNR-KGGVsQNCLACCSFDLLFQHVLSGwEGSVADATLFADARQHSLPIpEGKIYLGDAGFPMcdvllvpyR--- 451
                 6889*******99999.5555.34333.4666344444444445666666689************777777777**********983233433333... PP

   DDE_Tnp_1  93 dtleekgvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgld 191
                       gv y ++                   + ++ + ++++ ++ ++ +                           ++ R ++Er+F+ lkr+f+++
  CDO69913.1 452 ------GVRYHLA-------------------EWGRAEARPMNAQELFNLR--------------------------HASARNVVERIFGILKRRFKIL 499
                 ......5544443...................79*********99998888..........................********************** PP

   DDE_Tnp_1 192 rlryrglnrveaqlllllla 211
                    ++   +v+a++l  l+a
  CDO69913.1 500 TIPCEFSMAVQARILPALCA 519
                 *****999999999877776 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.19   6.7e+02       3      87 ..     332     417 ..     330     426 .. 0.63
   2 !   20.9   0.1   6.3e-08   0.00022     141     200 ..     469     527 ..     461     533 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.19
  Plant_tran   3 ylraptaedverllkig.esrgfpgmlgsldcmhwkwkncptawkgq.ytrgdkksptiileavasydlwiwhaffglpgsnndinv 87 
                 y++ p+a+d    l+i  + + +p +   + +m   +  c  + + +  +r +k   +    a +s+dl   h++ g  gs  d  +
  CDO69913.1 332 YVKLPSADDPIP-LHIStNPKFYPYLKNVVGAMDGTHIACAPSLEERpASRNRKGGVSQNCLACCSFDLLFQHVLSGWEGSVADATL 417
                 666666666555.44441344556555555566666666755555551445555555555668889*************99999765 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 6.3e-08
  Plant_tran 141 ekkklfaqkqeaarkdverafGvlqarfkivakparlwekedlakimkaciilhnmived 200
                 + ++lf  +  +ar  ver fG+l+ rfki++ p++ ++ ++ a+i+ a   +hn i  +
  CDO69913.1 469 NAQELFNLRHASARNVVERIFGILKRRFKILTIPCE-FSMAVQARILPALCAIHNFIRIH 527
                 46789**************************88775.78889999999999999998544 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.6e-07   0.00058      19      67 ..     451     500 ..     445     502 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.6e-07
  DDE_Tnp_1_2  19 rgIrasipplgrpakn.kaapkkqarederarnvvErsfgwlkrrrslat 67 
                  rg+r + +  gr + +  +a+  +  + + arnvvEr fg lkrr+++ t
   CDO69913.1 451 RGVRYHLAEWGRAEARpMNAQELFNLRHASARNVVERIFGILKRRFKILT 500
                  78899999999999889899999***********************9876 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.3   0.00031       1.1      21      32 ..     562     573 ..     562     573 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00031
         UVR  21 EkAAklRDqina 32 
                 E+AA++RDqi++
  CDO69913.1 562 ERAARIRDQIAE 573
                 9*********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4038.32
//
Query:       CDO69914.1  [L=344]
Description: hypothetical protein BN946_scf184884.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-09   36.1   0.2    1.2e-08   35.3   0.2    1.4  1  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain
    1.1e-08   35.9   0.1    1.8e-08   35.3   0.1    1.3  1  Myb_DNA-bind_3   Myb/SANT-like DNA-binding domain
     0.0009   19.3   0.0     0.0035   17.4   0.0    1.9  1  Myb_DNA-bind_5   Myb/SANT-like DNA-binding domain
     0.0042   17.5   1.4     0.0078   16.6   1.4    1.4  1  Tub_N            Tubby N-terminal
     0.0043   17.0   1.3     0.0071   16.3   1.3    1.3  1  Myc_N            Myc amino-terminal region
     0.0093   16.1   0.3      0.021   15.0   0.3    1.6  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.04   13.0   0.9      0.063   12.4   0.9    1.3  1  TAP42            TAP42-like family
      0.072   13.4   0.0       0.14   12.5   0.0    1.4  1  TAL_effector     TAL effector repeat
        0.1   12.8   0.2       0.27   11.5   0.2    1.7  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
       0.19   10.3   2.9       0.24    9.9   2.9    1.1  1  RRN3             RNA polymerase I specific transcription init
       0.23    9.5   3.5       0.34    9.0   3.5    1.2  1  DNA_pol_phi      DNA polymerase phi
        2.6    8.5  11.8        5.2    7.5  11.8    1.5  1  CENP-B_dimeris   Centromere protein B dimerisation domain
        3.7    7.2   9.0        3.7    7.2   7.9    1.5  1  LAT              Linker for activation of T-cells


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.2   8.4e-12   1.2e-08       3      68 ..      37     103 ..      35     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 8.4e-12
                     SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHH...HC----HHHHHHHHHHHHHHHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawgerilelrfqergkkrnkklWeevaeamae...rgykrspeqCkeKienLkkrYk 68 
                     +Wteee k Li++  ++   +   ++ + r+  +We+ a+++ +   +g +++ + Ck+K+  Lkk Y 
      CDO69914.1  37 HWTEEEEKILIDFLATDGKAAA-ADGANYRKP-VWEAAARKLGAlpcKGAPKTWQVCKNKWGRLKKAYW 103
                     8***************766665.4579****9.********976233699*****************96 PP

>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.3e-11   1.8e-08       1      96 []      37     136 ..      37     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.3e-11
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefna..ktgakytkkqlknrlkklrkeyklvkellersg.fsWDpttktvtAd..d 90 
                     +W++eeekil+d l++  k+    ++  ++k  w+ +++++ a   +ga +t +++kn++ +l+k y ++  l +  + +++++++    ++  +
      CDO69914.1  37 HWTEEEEKILIDFLATDGKAAAA-DGANYRKPVWEAAARKLGAlpCKGAPKTWQVCKNKWGRLKKAYWAIVVLENYGSgLTYNEEKGAGITEdmE 130
                     6****************999999.8******************99899**************************99887******9986666467 PP

  Myb_DNA-bind_3  91 evWkey 96 
                     e+W++y
      CDO69914.1 131 EIWAAY 136
                     999998 PP

>> Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-06    0.0035       3      70 ..      36     100 ..      35     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
  Myb_DNA-bind_5   3 knfseeEkevLvelveknksilegkksdaatnkaKsraWeeiaervna..lgsveRtaeelkkkwedlkr 70 
                     ++++eeE+++L++++ ++     gk+++a   ++++ +We  a+++ a  + + ++t++  k kw +lk+
      CDO69914.1  36 AHWTEEEEKILIDFLATD-----GKAAAADGANYRKPVWEAAARKLGAlpCKGAPKTWQVCKNKWGRLKK 100
                     68**********999887.....6777778899***************544555**************97 PP

>> Tub_N  Tubby N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.4   5.7e-06    0.0078     152     198 ..     184     240 ..     147     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.7e-06
       Tub_N 152 kr.gisssmnfde....eedleeekees.....kkssssaeensstrpeSasskkss 198
                  +   ++ mn+de    +ed+ee++e++      ++++s+++ +s  p +as kk  
  CDO69914.1 184 DQgDENEAMNDDEtqpaDEDEEEDDEDDdvvilPTTPASSQKRKSAVPHGASTKKAR 240
                 33466899*****888655555555555899**9******************99975 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.3   5.1e-06    0.0071     206     282 ..     161     240 ..     118     254 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.1e-06
       Myc_N 206 dppas..ssssasaassssssdskalssseedvlsesdeeeeeeeeeeeeidVVtvekrrssskrkevstlt..talsssr 282
                  p+++  s++ ++++ + s++ +++   +e    +e++  +e+eee++e+ dVV +  +  ss++++ s ++  ++++++r
  CDO69914.1 161 MPTKAkgSNVFRAGHVQPSQAAEDQGDENEAMNDDETQPADEDEEEDDEDDDVVILPTTPASSQKRK-SAVPhgASTKKAR 240
                 3444433344444444433333333333444444445556677778889999***999988877666.4454243344433 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   1.5e-05     0.021       3      42 ..      37      95 ..      35      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                     SSBHHHHHHHHHHHHH...........HTTC.HHHHHHHHTS.......S-HHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkk...........hGnr.WkkIaerlgg.......Rtekqcrsrw 42
                      WteeE+++L++ ++            + +  W++ a++lg        +t   c+++w
       CDO69914.1 37 HWTEEEEKILIDFLATdgkaaaadganYRKPvWEAAARKLGAlpckgapKTWQVCKNKW 95
                     6***************6666666665555337******999556677999999999999 PP

>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   4.6e-05     0.063     247     296 ..     167     212 ..     118     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
       TAP42 247 qkkVfgpghslPtMtvdEyleeevrrGniiegggeasakeeeeeedeeed 296
                  ++Vf++gh  P+   ++  +e  +    +++ +++ a+e+eee+de++d
  CDO69914.1 167 GSNVFRAGHVQPSQAAEDQGDENEA----MNDDETQPADEDEEEDDEDDD 212
                 589**********999999999887....888888888888886666665 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.8e-05      0.14       3      18 ..     244     259 ..     244     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.8e-05
                   HHHHHHHHHHHHHHHH CS
  TAL_effector   3 GaQALeAVlahgpaLr 18 
                   GaQAL+AV + +++++
    CDO69914.1 244 GAQALQAVGEKLDDFN 259
                   9*********999887 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00019      0.27       1      44 [.      38      99 ..      38     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygn............dWknIaealn.......rRtpkqcfdrwknkLr 44
                    WteeE++iL++   + g+             W+  a+ l+        +t + c+++w + L+
      CDO69914.1 38 WTEEEEKILIDFLATDGKaaaadganyrkpVWEAAARKLGalpckgaPKTWQVCKNKWGR-LK 99
                    ***************6555555555556567********88*****99**********98.75 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.9   0.00017      0.24     218     295 ..     183     268 ..     176     315 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
        RRN3 218 edlddeedeeleeelee..deddedddedd.........eesdlddlssdeeaeedee.kdeeeeslkkikelvekLDailtllfehlek 295
                 ed  de++  +++e++   ++++edd++ d         +   +++  +++  ++ ++ k++ ++ ++ ++++ ekLD   t+l + ++ 
  CDO69914.1 183 EDQGDENEAMNDDETQPadEDEEEDDED-DdvvilpttpA---SSQKRKSAVPHGASTkKARVSQGAQALQAVGEKLDDFNTILRSLVAL 268
                 4444444443333333242333333334.35899985432...333333333333333355555778999999*****988877666655 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.5   0.00025      0.34     647     678 ..     180     211 ..     162     251 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
  DNA_pol_phi 647 ddeeeeeeddeededseedddeeesdedeede 678
                  +  e++++++e ++d+e+   +e+++ed+ed+
   CDO69914.1 180 QAAEDQGDENEAMNDDETQPADEDEEEDDEDD 211
                  33333333333333333222222222222221 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.8    0.0038       5.2       7      45 ..     180     218 ..     174     224 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0038
  CENP-B_dimeris   7 eagedsesesdeeeeeeeedeededeeddedddevpvps 45 
                     +a ed   e +  +++e +  ++++eeddeddd v +p+
      CDO69914.1 180 QAAEDQGDENEAMNDDETQPADEDEEEDDEDDDVVILPT 218
                     566666666655556665555666678889999888775 PP

>> LAT  Linker for activation of T-cells
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.9    0.0027       3.7     100     156 ..     179     230 ..     138     253 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0027
         LAT 100 srqdsdgansvasyeneelacedadededeeDyhneGylvvLPDsspatstavssap 156
                 s+   d+ +   + +++e+++ d+de+ed+eD      +v+LP ++pa+s   +sa 
  CDO69914.1 179 SQAAEDQGDENEAMNDDETQPADEDEEEDDEDDD----VVILP-TTPASSQKRKSAV 230
                 2333333334444455588888888888777777....88998.5788888666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2418.50
//
Query:       CDO69915.1  [L=1407]
Description: hypothetical protein BN946_scf184568.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-35  122.8   0.1    4.3e-35  121.6   0.1    1.7  1  RhoGEF           RhoGEF domain
  ------ inclusion threshold ------
      0.056   13.5   3.4        2.8    8.0   1.2    3.1  2  Laminin_II       Laminin Domain II
       0.24   10.9   1.4       0.49    9.9   1.4    1.5  1  ArfA             Alternative ribosome-rescue factor A
        9.4    6.6   9.2         20    5.5   5.3    2.9  2  KxDL             Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.1   9.7e-39   4.3e-35       1     178 [.     103     288 ..     103     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 9.7e-39
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCT......CCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHH...H CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplsele......vlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkk...Y 90 
                 v+kEl++TEr+Yv+ L++l + y +pl++ +      ++ + e k++F+n++++l ++ + +l++Le++   +  +k    +gdv lk+++k+k    Y
  CDO69915.1 103 VVKELVNTERTYVKRLRILKTDYADPLRSFArsketaIIAAYEAKTLFGNVDQLLPVN-EAFLTDLEKME--RMAHKGGPGVGDVALKHFKKLKGfehY 198
                 79**********************99997779999***********************.77777777777..345667899*********99775677* PP

                 HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTS..GGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHH CS
      RhoGEF  91 seYcsnypnalkllkelskknkkfkafleeaeer..pecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikeva 178
                  +Y ++ ++a+++++++ kk+++f++++++++ +  +  +k+ L++lL++PvqR+prY LL++++lk++++++p++  l +a e  +++a
  CDO69915.1 199 RQYYAKREEAQRIFEHEIKKSSRFAEYIDRVKYStaDARNKVGLRELLMEPVQRIPRYTLLFRTMLKHMSATDPQRAPLLEADEIASRIA 288
                 *****************************9987733444*************************************99999988877775 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.2   0.00062       2.8      30      85 ..    1183    1235 ..    1167    1261 .. 0.86
   2 ?    3.9   0.0     0.011        51      49      96 ..    1324    1371 ..    1302    1374 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00062
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH. CS
  Laminin_II   30 keklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeas 85  
                  +++ +ei+r+   ++e+v++a + ++ A ++  ++   +  Ll++l+e+++++  s
  CDO69915.1 1183 SAQTQEIARK---IEEEVREAEENLVRALQNQEQVSAGMKTLLAQLQEVETRRHLS 1235
                  6777888888...999999******************************9998764 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
                  XXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHH CS
  Laminin_II   49 dankairdArrsvkkLeklapqLldklkelkqleeassslsdniseik 96  
                  ++++ ++ A+rs k   ++  qL  +++el++++e+   + + +++++
  CDO69915.1 1324 AMTRDLKAAKRSEKAAHHENYQLKRRIEELEMQQEHMYDITRRVQRMR 1371
                  556678889999999999999***************999******998 PP

>> ArfA  Alternative ribosome-rescue factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.4   0.00011      0.49      30      41 ..     739     750 ..     736     753 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
        ArfA  30 akKGKGSYqRka 41 
                 + KGKGSY+R++
  CDO69915.1 739 KDKGKGSYSRRR 750
                 67********87 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.11   4.8e+02      48      75 ..    1061    1088 ..    1044    1093 .. 0.67
   2 ?    5.5   5.3    0.0045        20       9      82 ..    1202    1277 ..    1199    1279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
        KxDL   48 arfkqgtkllkevkkdLesifkkirslk 75  
                  a++ + ++++  +k d+es+++ +++++
  CDO69915.1 1061 ADVDRLIRVAETTKTDIESSRRALKRIR 1088
                  3455556666666666666666666664 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0045
        KxDL    9 edldeilalQaqtsgrlnkknreLlel..nalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakky 82  
                  e+l ++l+ Q+q+s+ ++   ++L+e+  +  +++r + l+    q+t  l  vk++L+s++++ +  k+ l +k+
  CDO69915.1 1202 ENLVRALQNQEQVSAGMKTLLAQLQEVetRRHLSSRATMLTGGTSQKTSQLTAVKAELQSSQRQREVVKDLLDDKH 1277
                  78999*******************9872256899******************************999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.49
# Mc/sec: 8598.49
//
Query:       CDO69916.1  [L=661]
Description: hypothetical protein BN946_scf184568.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-22   77.6   4.0    5.3e-11   42.5   0.1    3.7  3  Myb_DNA-binding  Myb-like DNA-binding domain
      1e-18   67.3   0.9    3.7e-13   49.5   0.3    4.2  5  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0085   16.2   0.1       0.37   10.9   0.1    2.6  1  Rap1_C           TRF2-interacting telomeric protein/Rap1 - C 
  ------ inclusion threshold ------
      0.065   13.6   4.9       0.34   11.3   0.5    3.4  4  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain
       0.24   11.6   0.9         11    6.3   0.1    2.5  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.059   2.1e+02       1      21 [.     343     364 ..     343     413 .. 0.62
   2 !   42.5   0.1   1.5e-14   5.3e-11       1      46 []     420     464 ..     420     464 .. 0.97
   3 !   32.0   0.4   2.9e-11     1e-07       1      43 [.     472     525 ..     472     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.059
                      CSSSBHHHHHHHHHHHHHHT.T CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhG.n 21 
                      +gk+++ E+ +L  a++++   
       CDO69916.1 343 KGKFSATEEAQLNAALERYRvT 364
                      799*********9999996533 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 1.5e-14
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                      +g+Wt+ Ed+lL++ ++ +G +W+kI++ ++ Rt+ +cr+r+rn+l
       CDO69916.1 420 KGAWTKTEDDLLVQSIADLGQQWEKISDIVQ-RTAADCRDRYRNHL 464
                      79****************************6.************97 PP

  == domain 3  score: 32.0 bits;  conditional E-value: 2.9e-11
                      CSSSBHHHHHHHHHHHHH....HTTC......HHHHHHHHT.SS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkk....hGnr......WkkIaerlg.gRtekqcrsrwr 43 
                      +g+Wt+eE+e L + v +    +G++      W  +++r+g  R + qcr +w 
       CDO69916.1 472 TGAWTKEEEEELTKIVTEmtveQGKDidndifWGVVSKRMGgKRGRQQCRIKWT 525
                      69****************999988778999***********77**********6 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.5e+03      47      60 .]     341     354 ..     338     354 .. 0.87
   2 ?   -2.7   0.0       2.1   7.5e+03      18      28 ..     389     399 ..     381     414 .. 0.69
   3 !   49.5   0.3     1e-16   3.7e-13       1      60 []     423     483 ..     423     483 .. 0.95
   4 !   24.9   0.0     5e-09   1.8e-05       1      50 [.     475     535 ..     475     545 .. 0.84
   5 ?    0.6   0.3      0.19     7e+02       1      47 [.     541     593 ..     541     603 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  Myb_DNA-bind_6  47 isrkkwskeedirL 60 
                     ++++k+s++e+ +L
      CDO69916.1 341 YKKGKFSATEEAQL 354
                     6899*****99987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
  Myb_DNA-bind_6  18 ndWknIaealn 28 
                       W++I +al+
      CDO69916.1 389 TFWSEITSALH 399
                     459***99987 PP

  == domain 3  score: 49.5 bits;  conditional E-value: 1e-16
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL..rpkisrkkwskeedirL 60 
                     Wt+ Ed++L++   + g++W++I+++   Rt+ +c+dr++n+L  r+++++++w+kee++ L
      CDO69916.1 423 WTKTEDDLLVQSIADLGQQWEKISDIVQ-RTAADCRDRYRNHLadRDVRRTGAWTKEEEEEL 483
                     ****************************.************998777799999*****9986 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 5e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklveky..gn......d..WknIaealn.rRtpkqcfdrwknkLrpkisrk 50 
                     Wt+eE+e+L k+v ++  ++      d  W  +++ ++ +R  +qc+ +w  +L p+++++
      CDO69916.1 475 WTKEEEEELTKIVTEMtvEQgkdidnDifWGVVSKRMGgKRGRQQCRIKWTDSLAPQLKNT 535
                     ***************75523457765366********55*****************99987 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.19
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn......dWknIaeal.nrRtpkqcfdrwknkLrpki 47 
                     W++ + +iL+  v   +       dWk+  ++  n  ++ ++++rw +  + +i
      CDO69916.1 541 WSAMDAYILVHKVDSLNVrddteiDWKLLPDENwNVWSAHALQRRWVT-MKRSI 593
                     888888888555555431233444999998776689999999999988.66555 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1    0.0001      0.37      27      70 ..     403     451 ..     379     525 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
      Rap1_C  27 anyvlealkrgkglpknkrGiWteedDeaL......kagderdlerlekk 70 
                    v ++++r    p   +G Wt+ +D+ L        +++++++ +++ 
  CDO69916.1 403 IIAVYHHVRR-TRHPYAGKGAWTKTEDDLLvqsiadLGQQWEKISDIVQR 451
                 4555666665.33577899***********87776644555555555554 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         5   1.8e+04      30      45 ..     384     399 ..     372     403 .. 0.64
   2 ?    2.1   0.1     0.071   2.5e+02      33      62 ..     440     462 ..     420     466 .. 0.64
   3 ?   11.3   0.5   9.4e-05      0.34       3      62 ..     474     526 ..     472     538 .. 0.84
   4 ?   -2.3   0.0       1.7   5.9e+03      52      72 ..     578     598 ..     572     603 .. 0.70

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5
                     SS--HHHHHHHHHHHH CS
  Myb_DNA-bind_4  30 kkrnkklWeevaeama 45 
                     +k ++  W e+ +a++
      CDO69916.1 384 EKGHETFWSEITSALH 399
                     3334447999988775 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.071
                     -HHHHHHHHHHHHHHC----HHHHHHHHHH CS
  Myb_DNA-bind_4  33 nkklWeevaeamaergykrspeqCkeKien 62 
                     +  +We++++ ++     r++  C+++++n
      CDO69916.1 440 Q--QWEKISDIVQ-----RTAADCRDRYRN 462
                     3..5888887765.....677788888766 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 9.4e-05
                     SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawgerilelrfqergkkrnkklWeevaeamaergykrspeqCkeKien 62 
                      Wt+ee + L ++++e ++e+    ++   n   W  v+++m   g kr  +qC+ K+ +
      CDO69916.1 474 AWTKEEEEELTKIVTEMTVEQ----GKDIDNDIFWGVVSKRM---GGKRGRQQCRIKWTD 526
                     6***************65555....56788888999999998...556778*******75 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.7
                     -HHHHHHHHHHHHHHHHCSSS CS
  Myb_DNA-bind_4  52 speqCkeKienLkkrYkkeke 72 
                     s++ +++++ ++k++ k   e
      CDO69916.1 578 SAHALQRRWVTMKRSIKGFEE 598
                     556677888888887665555 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.023        83      27      54 ..     421     448 ..     405     458 .. 0.82
   2 ?    6.3   0.1     0.003        11      18      43 ..     458     489 ..     450     493 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.023
  SANT_DAMP1_like  27 edWtkeetdyLfdlckeydlrfvviaDr 54 
                        Wtk+e d L++ + +   ++  i D 
       CDO69916.1 421 GAWTKTEDDLLVQSIADLGQQWEKISDI 448
                      46********************999996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.003
  SANT_DAMP1_like  18 eeYeellkeed......WtkeetdyLfdlcke 43 
                      + Y+++l+++d      Wtkee + L ++++e
       CDO69916.1 458 DRYRNHLADRDvrrtgaWTKEEEEELTKIVTE 489
                      78******955555667**********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4469.53
//
Query:       CDO69917.1  [L=1008]
Description: hypothetical protein BN946_scf184568.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-10   39.2   6.4    7.6e-07   28.9   0.0    3.2  4  Amidohydro_3  Amidohydrolase family
    2.4e-08   33.7   0.0    1.3e-05   24.7   0.0    2.8  3  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   8.6e-06     0.077       2      19 ..     163     180 ..     162     190 .. 0.94
   2 !   28.9   0.0   8.5e-11   7.6e-07     411     469 ..     469     521 ..     465     523 .. 0.88
   3 ?   -2.5   0.3       0.3   2.7e+03       2      14 ..     634     646 ..     633     647 .. 0.91
   4 ?   -1.6   0.0      0.15   1.4e+03     352     374 ..     904     926 ..     819     956 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.6e-06
  Amidohydro_3   2 viDakGrlvlPGFvDsHt 19 
                   v+Da+G+ v+PG++D Ht
    CDO69917.1 163 VVDAHGAWVTPGLIDLHT 180
                   8****************8 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 8.5e-11
  Amidohydro_3 411 eealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdG 469
                   + al  +T+ pA a gl +r G L++GadAD+v++d  pl++ ++      +r++ +dG
    CDO69917.1 469 HLALSSVTSVPAGAAGLLHRIGVLREGADADVVIWDSHPLQLGAT------PRKVFIDG 521
                   568999***********************************9998......66666665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.3
  Amidohydro_3   2 viDakGrlvlPGF 14 
                   v+D++G+ ++PG+
    CDO69917.1 634 VMDLQGGALAPGM 646
                   89**********7 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.15
  Amidohydro_3 352 erargstpvkellnagvkvalgs 374
                   ++ ++ t++  ll++gv+v lg+
    CDO69917.1 904 PPLTNGTALSKLLSHGVTVGLGT 926
                   45556788999999999999998 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0009       8.1       1      17 [.     170     184 ..     170     232 .. 0.84
   2 !   24.7   0.0   1.4e-09   1.3e-05     239     339 ..     437     519 ..     371     533 .. 0.74
   3 ?   -2.5   0.0      0.27   2.4e+03     231     253 ..     911     933 ..     906     956 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0009
                   EEEE-EEEEEEECETTE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsl 17 
                   +v+PGlID+H+ l   l
    CDO69917.1 170 WVTPGLIDLHTNLG--L 184
                   59*********994..4 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.4e-09
                   TSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEE CS
  Amidohydro_1 239 GvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvk 335
                   G+ +++ +D +   +s       rl+++ q+         gl++  al+ +T  +A a gl +++G + +G dAD v++d ++      l    +++
    CDO69917.1 437 GFLIAMKSD-QPQHDSR------RLLFEAQQ-----AHYFGLPPHLALSSVTSVPAGAAGLLHRIGVLREGADADVVIWDSHP------LQLGATPR 515
                   555556666.3222333......33333333.....23678**************************************8754......22233444 PP

                   EEEE CS
  Amidohydro_1 336 kviv 339
                   kv++
    CDO69917.1 516 KVFI 519
                   4444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.27
                   HHHHHHHHTSCEEEEEECTTSSC CS
  Amidohydro_1 231 alrkaldeGvkvglgtDgaasgn 253
                   al k+l+ Gv vglgt +a++ +
    CDO69917.1 911 ALSKLLSHGVTVGLGTWDAGHVR 933
                   78899999999999996666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.33s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 5776.06
//
Query:       CDO69918.1  [L=308]
Description: hypothetical protein BN946_scf184568.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00012   21.9   0.8     0.0011   18.6   0.6    2.2  2  Syntaxin     Syntaxin
    0.00072   19.4   1.7       0.62    9.9   0.0    2.2  2  KASH_CCD     Coiled-coil region of CCDC155 or KASH
     0.0016   18.5   2.1     0.0028   17.8   1.3    1.8  1  Cnn_1N       Centrosomin N-terminal motif 1
  ------ inclusion threshold ------
      0.017   15.5   2.5      0.017   15.5   2.5    2.2  2  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te
       0.02   15.0   0.8      0.051   13.7   0.8    1.7  1  DUF4351      Domain of unknown function (DUF4351)
      0.064   13.0   6.6        4.9    7.0   3.0    2.5  2  DivIC        Septum formation initiator
      0.067   13.3   9.6      0.087   12.9   0.0    3.1  3  bZIP_2       Basic region leucine zipper
       0.12   12.4   6.3        6.3    6.9   0.1    2.4  2  TMF_DNA_bd   TATA element modulatory factor 1 DNA binding
        0.2   10.1   3.5        1.3    7.4   0.1    2.0  2  Herpes_UL6   Herpesvirus UL6 like
       0.27   11.2   1.0        9.6    6.2   0.0    2.3  2  DUF4446      Protein of unknown function (DUF4446)
       0.31   11.5   2.8         23    5.5   0.0    2.3  2  Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) pr
        0.5   10.7   5.5         11    6.4   2.6    2.5  2  TSC22        TSC-22/dip/bun family
       0.57   10.3   5.4        0.1   12.8   1.6    1.6  1  End3         Actin cytoskeleton-regulatory complex protein EN
       0.59    9.2   3.2       0.88    8.6   3.2    1.2  1  Atg14        Vacuolar sorting 38 and autophagy-related subuni
       0.73   10.3   7.5         19    5.8   0.1    2.4  2  ZapB         Cell division protein ZapB
       0.77    9.9  12.2        3.2    7.9   0.0    2.8  2  bZIP_1       bZIP transcription factor
        1.6    9.0   5.7       0.59   10.4   0.4    2.5  2  HALZ         Homeobox associated leucine zipper
        1.9    8.6   8.6         22    5.2   8.6    2.2  1  BRE1         BRE1 E3 ubiquitin ligase
        5.1    6.4   6.9       0.25   10.6   1.6    1.4  2  DUF4407      Domain of unknown function (DUF4407)
        7.4    7.1  14.6        2.7    8.5   0.1    3.1  3  APG6_N       Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.46   4.1e+02       6      34 ..      20      48 ..      11      58 .. 0.75
   2 !   18.6   0.6   1.3e-06    0.0011      12      83 ..      67     139 ..      61     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.46
    Syntaxin  6 keveeikkeiekleeevkklkkqneeskt 34
                  v+e+++e ++l+++v++l+++ +++ +
  CDO69918.1 20 GGVKELERENASLRRKVHSLEAKLDRITA 48
                56778888888888888888877777655 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.3e-06
    Syntaxin  12 kkeiekleeevkklkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegs 83 
                 ++e++ l+++v++l+k+ne+  +  ++ s+k lk + e + ++++ +a ++   L + + s  ++++ +++g 
  CDO69918.1  67 REEVARLRNQVRRLEKANEKQRKRIHQLSLKeLKTEAEDLLDAVEFEASHIMGSLASQRVSRPHARELPRRGR 139
                 899****************************************************998888888888876665 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00069      0.62      90     119 ..      22      51 ..       6      56 .. 0.85
   2 !    7.9   1.1    0.0027       2.4      79     117 ..      66     104 ..      59     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00069
    KASH_CCD  90 nkqlekenqsLiakiesLqeenikllaekd 119
                  k+le+en sL+ k++sL+ ++ +++a  d
  CDO69918.1  22 VKELERENASLRRKVHSLEAKLDRITAADD 51 
                 589******************999987655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0027
    KASH_CCD  79 leEkrarlkaqnkqlekenqsLiakiesLqeenikllae 117
                   E+ arl +q ++lek n+  +++i++L  +  k  ae
  CDO69918.1  66 AREEVARLRNQVRRLEKANEKQRKRIHQLSLKELKTEAE 104
                 57889999*******************999999998887 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.3   3.2e-06    0.0028      10      69 ..      23      94 ..      21      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.2e-06
      Cnn_1N 10 dkLkKENFdLKLriyfLeerleklse............eqkeellkenielkveveslqkelkekkkllrea 69
                ++L++EN +L+ +++ Le +l++++              +   + +e   l+ +v  l+k +++ +k+++++
  CDO69918.1 23 KELERENASLRRKVHSLEAKLDRITAaddtpvprpkgkGSAALAREEVARLRNQVRRLEKANEKQRKRIHQL 94
                68***********************************888888999999******************99987 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   2.5   1.9e-05     0.017       4      86 ..      23     107 ..      20     110 .. 0.82
   2 ?   -0.4   0.6       1.5   1.4e+03     114     123 ..     224     233 ..     180     243 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-05
  Uso1_p115_C   4 seleseaaslkdeneklkaelqslskalesleqk....eakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDLL 86 
                  +ele+e+asl++   +l+a+l+  + a            + + a+++  +l++++ +lek+ ek r+++ +   ke   ++E +DLL
   CDO69918.1  23 KELERENASLRRKVHSLEAKLDRITAADDTPVPRpkgkGSAALAREEVARLRNQVRRLEKANEKQRKRIHQLSLKEL--KTEAEDLL 107
                  79999999999999999999998776544433334455677888899999999999999999999999999999997..9******9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.5
  Uso1_p115_C 114 edddeddeed 123
                  edd+ ++e+ 
   CDO69918.1 224 EDDTTEEEDA 233
                  3333333332 PP

>> DUF4351  Domain of unknown function (DUF4351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   5.7e-05     0.051      17      51 ..      77     111 ..      66     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.7e-05
     DUF4351  17 trrfGelspeleeqIksLsleqLEdLgealLDFss 51 
                  rr+ + +++ +++I +Lsl++L   +e+lLD  +
  CDO69918.1  77 VRRLEKANEKQRKRIHQLSLKELKTEAEDLLDAVE 111
                 59********88********************765 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0056         5      26      51 ..      22      47 ..      16      52 .. 0.87
   2 ?    7.0   3.0    0.0055       4.9      20      44 ..      71      95 ..      64     110 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0056
                HHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 26 iaalqaelaklkaeneeLeaevkdLk 51
                +++l++e+a+l+ +  +Lea++++ +
  CDO69918.1 22 VKELERENASLRRKVHSLEAKLDRIT 47
                6899****************998874 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0055
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLe 44
                 +l++++ +l++ ++k+++++ +L 
  CDO69918.1 71 ARLRNQVRRLEKANEKQRKRIHQLS 95
                4567777777777777777777664 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.7e-05     0.087      34      53 ..      22      41 ..      20      42 .. 0.93
   2 ?    1.3   4.7      0.42   3.7e+02      24      51 ..      67      94 ..      63      97 .. 0.61
   3 ?    0.1   0.8      0.96   8.6e+02      20      40 ..      86     102 ..      83     111 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-05
                HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 34 vkeLeeeNaqLrqkveqLek 53
                vkeLe+eNa Lr+kv +Le+
  CDO69918.1 22 VKELERENASLRRKVHSLEA 41
                89***************996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.42
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 24 kakeeeleervkeLeeeNaqLrqkveqL 51
                +++ + l ++v +Le+ N++ r+++ qL
  CDO69918.1 67 REEVARLRNQVRRLEKANEKQRKRIHQL 94
                4444555566666666666666666665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.96
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  20 RekkkakeeeleervkeLeee 40 
                 +++k++++ +l+e     ++e
  CDO69918.1  86 KQRKRIHQLSLKEL----KTE 102
                 45666666665554....444 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.007       6.3      42      66 ..      22      46 ..      10      49 .. 0.81
   2 ?    6.1   3.1     0.013        11      29      55 ..      71      98 ..      64     114 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.007
  TMF_DNA_bd 42 nkelekeikelkkkleklekeleel 66
                +kele e ++l +k+ +le +l+++
  CDO69918.1 22 VKELERENASLRRKVHSLEAKLDRI 46
                5788888888888888888888765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
  TMF_DNA_bd 29 lklnntikkLrkknkelekeikelk.kk 55
                 +l+n++ +L k n+++ k i +l+ k+
  CDO69918.1 71 ARLRNQVRRLEKANEKQRKRIHQLSlKE 98
                2344444444444444444444443333 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0015       1.3     370     411 ..      11      52 ..       6      75 .. 0.81
   2 ?    2.8   1.5     0.037        33     372     415 ..      68     111 ..      64     146 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
  Herpes_UL6 370 leeqineqfdtiekLkkenelllkklkelekeLerlreeakk 411
                 l + + + +  +++L++en+ l +k+++le +L+r ++ + +
  CDO69918.1  11 LHSILSRALGGVKELERENASLRRKVHSLEAKLDRITAADDT 52 
                 555666778889***********************9877654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.037
  Herpes_UL6 372 eqineqfdtiekLkkenelllkklkele.keLerlreeakkeaka 415
                 e + ++ +++ +L+k+ne+  k++++l  keL++ +e+    a +
  CDO69918.1  68 EEVARLRNQVRRLEKANEKQRKRIHQLSlKELKTEAEDLLD-AVE 111
                 56778889*****************9973566666444443.333 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011       9.6      39      77 ..       7      45 ..       1      49 [. 0.89
   2 ?    3.5   0.2     0.069        62      45      94 ..      68     119 ..      58     125 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
     DUF4446 39 dgksleellkekleeveelkeeseelekeieeleeklkk 77
                 ++sl ++l++ l  v+el++e+++l++++++le+kl++
  CDO69918.1  7 PEESLHSILSRALGGVKELERENASLRRKVHSLEAKLDR 45
                6799*******************************9986 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.069
     DUF4446  45 ellkekleeveelkeeseelekeieeleek.lkkslqk.vglvrYdAFeemG 94 
                 e +++  ++v++l++++e+ +k+i++l+ k lk+  +  +  v ++A + mG
  CDO69918.1  68 EEVARLRNQVRRLEKANEKQRKRIHQLSLKeLKTEAEDlLDAVEFEASHIMG 119
                 4556677889999999999999998886431333332214555555555555 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.026        23      40      63 ..      22      45 ..      16      51 .. 0.89
   2 ?    5.1   1.3     0.034        30      35      66 ..      72     104 ..      64     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
  Fungal_TACC 40 ldklelenkslkqeieqLkkqlea 63
                 +++le en sl++ +++L+ +l+ 
   CDO69918.1 22 VKELERENASLRRKVHSLEAKLDR 45
                 689******************986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.034
  Fungal_TACC  35 kyqkkldklelenkslkqeieqLk.kqleaerk 66 
                  + ++++++le+ n+++++ i+qL+ k+l++e +
   CDO69918.1  72 RLRNQVRRLEKANEKQRKRIHQLSlKELKTEAE 104
                  678999*****************7355666554 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.054        48      30      45 ..      22      37 ..      19      43 .. 0.86
   2 ?    6.4   2.6     0.012        11      13      34 ..      67      88 ..      65     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.054
       TSC22 30 nseleeENslLkalas 45
                ++ele+EN+ L++ + 
  CDO69918.1 22 VKELERENASLRRKVH 37
                689*********9875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
       TSC22 13 rEeVevLkekIkeLeernsele 34
                rEeV  L+++++ Le+ n++ +
  CDO69918.1 67 REEVARLRNQVRRLEKANEKQR 88
                9999999999999999988765 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.6   0.00011       0.1      94     182 ..      24     111 ..      16     119 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
        End3  94 gtdweevrLkreLaeLeeklekveeeaekrkekereessksalvkreleqLLkYKeeqlreleegegkske.knlksvkedietveeqVe 182
                 + + e+ +L+r+++ Le+kl+++ ++ ++    + + + ++al ++e+  L +   ++l++++e+++k  +  +lk++k + e + + Ve
  CDO69918.1  24 ELERENASLRRKVHSLEAKLDRITAADDTPV-PRPKGKGSAALAREEVARLRNQV-RRLEKANEKQRKRIHqLSLKELKTEAEDLLDAVE 111
                 5577999*****************9887653.34444678899999999986654.4455554444444444899999999888877776 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.2   0.00098      0.88      32     118 ..      23     103 ..      15     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00098
       Atg14  32 aklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdl 118
                 + l  e++sl++k+  ++++ +    + ++++ +     + k   a+ re++++l+ ++++l k++e+++k++ +ls k  + + ++
  CDO69918.1  23 KELERENASLRRKVHSLEAKLD----RITAADDTPVPRPKGKGSAALAREEVARLRNQVRRLEKANEKQRKRIHQLSLK--ELKTEA 103
                 5678899999999997777777....55666777777777888899999999999999999999999999999998865..344444 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.021        19      15      43 ..      17      45 ..       9      52 .. 0.71
   2 ?    5.3   4.2      0.03        27      18      50 ..      68     101 ..      62     113 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.021
        ZapB 15 kaidtitlLqmeieeLkeeneelkeenre 43
                 a+  +++L  e++ L++++ +l+ + ++
  CDO69918.1 17 RALGGVKELERENASLRRKVHSLEAKLDR 45
                56666778888888888888888777655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.03
        ZapB  18 dtitlLqmeieeLkeeneelkeenrele.eeneq 50 
                 +++++L++++++L++ ne+  +++ +l+ +e++ 
  CDO69918.1  68 EEVARLRNQVRRLEKANEKQRKRIHQLSlKELKT 101
                 5778889999999888888888888776544443 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0035       3.2      35      55 ..      22      42 ..      20      47 .. 0.87
   2 ?    7.4   3.5     0.005       4.5      25      53 ..      67      95 ..      66     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0035
                HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 35 vkaLekeNksLkseleelkke 55
                vk+Le eN+sL+ ++ +l+ +
  CDO69918.1 22 VKELERENASLRRKVHSLEAK 42
                899***********9999876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.005
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 25 qaeieeLerrvkaLekeNksLkseleelk 53
                ++e+++L ++v  Lek N++ ++++ +l+
  CDO69918.1 67 REEVARLRNQVRRLEKANEKQRKRIHQLS 95
                5899********************99885 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00065      0.59      23      42 ..      24      43 ..      21      44 .. 0.92
   2 ?    0.4   0.1       0.9   8.1e+02      27      39 ..      69      81 ..      65      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00065
        HALZ 23 sLkkenekLkaelqeLkekl 42
                 L++en +L+ ++++L +kl
  CDO69918.1 24 ELERENASLRRKVHSLEAKL 43
                699***************98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.9
        HALZ 27 enekLkaelqeLk 39
                e  +L++++++L 
  CDO69918.1 69 EVARLRNQVRRLE 81
                5568999999886 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.6     0.024        22      13      92 ..      23     110 ..      15     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.024
        BRE1  13 eelseqlskkvkeltileekklrleaeka......kadqkyfaamrskdalenelkkLnkllsKsselieqLke..lekefvrklkel 92 
                 +el++++ ++  ++++le k+ r++a  +      k +     a+ +   l+n++++L k ++K+++ i+qL    l +e   +l++ 
  CDO69918.1  23 KELERENASLRRKVHSLEAKLDRITAADDtpvprpKGKGSAALAREEVARLRNQVRRLEKANEKQRKRIHQLSLkeLKTEAEDLLDAV 110
                 67888888888888888888888887643333333778888888899999********************975433777777777665 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.6   0.00028      0.25     134     225 ..      21     104 ..       4     125 .. 0.65
   2 ?   -3.6   0.3       6.3   5.6e+03     214     225 ..     221     232 ..     196     249 .. 0.42

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
     DUF4407 134 elaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleae 225
                  ++ele+++a+l++++ ++ea+ld+ +a+ +  +   kg      +G  + a+e  a l  + ++l+++++k  +++r+ +l  +  + eae
  CDO69918.1  21 GVKELERENASLRRKVHSLEAKLDRITAADDTPVPRPKG------KGSAALAREEVARLRNQVRRLEKANEK--QRKRIHQLSLKELKTEAE 104
                 578899999999999999999999887777755554223......345566667777777777777777777..555555554333333333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.3
     DUF4407 214 alraelaeleae 225
                  +r+  ++ e++
  CDO69918.1 221 VRREDDTTEEED 232
                 111111111111 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0031       2.7      59      96 ..      11      48 ..       2      54 .. 0.84
   2 ?    4.0   3.7     0.076        68      60      97 ..      67     104 ..      58     117 .. 0.65
   3 ?    0.8   0.7      0.74   6.6e+02      22      68 ..     203     249 ..     190     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
      APG6_N 59 lekeeeelleeLkelekereeleaelaaleeelealee 96
                l++  +++l   kele+e+++l++++++le++l+++ +
  CDO69918.1 11 LHSILSRALGGVKELERENASLRRKVHSLEAKLDRITA 48
                566678889999*******************9998765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.076
      APG6_N  60 ekeeeelleeLkelekereeleaelaaleeelealeee 97 
                 ++e ++l ++ ++lek++e+ ++ +++l+ ++ + e+e
  CDO69918.1  67 REEVARLRNQVRRLEKANEKQRKRIHQLSLKELKTEAE 104
                 45566666777777777777777777766555555544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.74
      APG6_N  22 ekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelle 68 
                  +++da+++  k+  k ++  e++ +e+e++e+ +++ ++e +++ +
  CDO69918.1 203 SQQWDALLDIAKEWAKMDVRREDDTTEEEDAEDFIDDGQEETSAAAS 249
                 56677777777777777777776677777777778888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1381  (0.077026); expected 358.6 (0.02)
Passed bias filter:                      767  (0.0427799); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2050.48
//
Query:       CDO69919.1  [L=409]
Description: hypothetical protein BN946_scf184568.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-07   31.0   0.0    2.7e-07   30.2   0.0    1.4  1  Lactamase_B_4  tRNase Z endonuclease
    0.00039   20.0   0.1       0.36   10.3   0.0    3.3  2  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     3e-11   2.7e-07       6      56 ..      19      68 ..      14      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3e-11
  Lactamase_B_4  6 ptsDtsgPlllLqldskrYlfGkvgEgtQRavneqkvrlsklesiFLtgkv 56
                   p+s  ++++l+L+ld + +lf ++gE tQ  + ++ v+++k+++iF+t+++
     CDO69919.1 19 PSSTRNHSSLALRLDGDVWLF-DCGEATQHQIQKSSVKMGKIQKIFITHTH 68
                   5555566**************.**************************987 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0089        80       4      40 ..      38      68 ..      37      77 .. 0.78
   2 !   10.3   0.0     4e-05      0.36     174     201 .]     312     355 ..     108     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0089
                   EES--TTHHHH.HTCGGS--SSS--..SEEEEE-SS-- CS
  Lactamase_B_2  4 LiDagpdlrqq.alralqPvelrdelppidaVllthaH 40
                   L+D+g  +  q +++         ++ +i+ +++th H
     CDO69919.1 38 LFDCGEATQHQiQKSSV-------KMGKIQKIFITHTH 68
                   78888886666333333.......4789*********9 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4e-05
                    H................HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 174 r................hmgHltpeeaveaaadlgakrlvliHi 201
                                     + gH+tp+ a ++a++++a++lvl H+
     CDO69919.1 312 PntkvsdtyeiveerarSRGHSTPQMAGAFAKRIRARKLVLNHF 355
                    1444445555555666699**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2698.66
//
Query:       CDO69920.1  [L=356]
Description: hypothetical protein BN946_scf184568.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-32  111.6   5.8    3.3e-32  111.6   5.8    2.3  2  THOC7           Tho complex subunit 7
     0.0086   15.7   0.1      0.023   14.4   0.1    1.8  1  PAM2            Ataxin-2 C-terminal region
  ------ inclusion threshold ------
      0.027   14.3   6.6       0.05   13.5   6.6    1.4  1  PIN_8           PIN like domain
      0.038   12.6   7.1      0.057   12.0   7.1    1.2  1  FapA            Flagellar Assembly Protein A
      0.044   11.7   1.5      0.054   11.4   1.5    1.3  1  V_ATPase_I      V-type ATPase 116kDa subunit family
      0.061   12.3   5.8      0.094   11.7   5.8    1.2  1  Ran-binding     RanGTP-binding protein
      0.069   12.8   1.3       0.17   11.6   1.2    1.8  1  DUF842          Eukaryotic protein of unknown function (DUF84
       0.13   11.3   1.1       0.65    9.0   1.0    1.8  2  Biopterin_H     Biopterin-dependent aromatic amino acid hydro
       0.44    9.8   6.5       0.73    9.1   6.5    1.3  1  DUF4407         Domain of unknown function (DUF4407)
        0.6   10.2   5.8       0.84    9.7   1.0    2.1  2  DUF1664         Protein of unknown function (DUF1664)
          1    9.8   7.9       0.72   10.3   3.7    2.3  2  Fungal_TACC     Fungal Transforming acidic coiled-coil (TACC)
        1.8    8.8  13.4        5.9    7.1  13.4    2.0  1  zf-C4H2         Zinc finger-containing protein
        2.9    7.1   4.7        4.1    6.6   4.7    1.2  1  TMPIT           TMPIT-like protein
        3.2    7.8  19.1       0.64   10.0   9.8    2.5  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
        6.8    7.1  14.0        2.8    8.3   7.2    2.3  2  YlqD            YlqD protein


Domain annotation for each model (and alignments):
>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   5.8   2.7e-35   3.3e-32       1     132 []      28     164 ..      28     164 .. 0.98
   2 !    6.7   1.5    0.0072       8.5      77     122 ..     157     203 ..     157     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 2.7e-35
       THOC7   1 eeliksRLlnveerplkrltkrllklltsla.......esteeeleqlkedllldfaafelsierlqllakanerereryeaekeeieseieavreeie 92 
                 +++i+sR++n +e+ l+r+t+++++++++ +        s++ +++ +++++ l++++f+ls++++ ++++a +r++e+y++e+e+i +e + ++++ie
  CDO69920.1  28 DAIIHSRITN-DEKALRRVTRKFHNYASVAYpspvppvPSNATSVDDARDAFILELETFQLSLRKSFMVCEAEARQVEEYQRERERIANERSRLKQQIE 125
                 89********.9*************999988*******999********************************************************** PP

       THOC7  93 elkaqLeearatranrkeydelaekItsnpkpReeqeaql 132
                 +lk +Le+a+ +r+++ eyd++aek+++ p +R+e+e+++
  CDO69920.1 126 QLKGTLEQAQLERKRKIEYDVIAEKVNTLP-TRQELEQSI 164
                 ******************************.*****9876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0072
       THOC7  77 keeieseieavreeieelkaqLe.earatranrkeydelaekItsnp 122
                 ++e+e++i a+++++++ +++ e + r ++a++ + d++ + I+  +
  CDO69920.1 157 RQELEQSIRALENDMAAIRSEHEnQNRILHAQKAALDTVIRDINVLR 203
                 6899***************999835677889************9765 PP

>> PAM2  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.9e-05     0.023       5      17 ..     278     290 ..     275     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
                 -SSTTSS----TT CS
        PAM2   5 kLNPnAkEFVPsf 17 
                 +LNP+A  FVP++
  CDO69920.1 278 VLNPSARSFVPTS 290
                 7**********87 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   6.6   4.2e-05      0.05      41     134 ..     103     199 ..      98     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.2e-05
       PIN_8  41 alEfqrnresviskekkayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeel......kaeleelkksskadkeedpilkk 133
                 ++E+qr+re++ +++++ ++++ ++l+   ++a+ +++++++ +   ++++t  +r+el++++++l++++      +++++++ +++ka    d++ + 
  CDO69920.1 103 VEEYQRERERIANERSRLKQQI-EQLKGTLEQAQLERKRKIEYDVIAEKVNTLPTRQELEQSIRALENDMaairseHENQNRILHAQKAAL--DTVIRD 198
                 68*******8888555555555.478777777777788899999999999999999************99555322222222222222222..666655 PP

       PIN_8 134 l 134
                 +
  CDO69920.1 199 I 199
                 5 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   7.1   4.8e-05     0.057     335     428 ..      99     196 ..      86     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
        FapA 335 lkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletk......eklkeeleeleeelkelkeeleskkeeakikvnkeiypgv 427
                   ++++e ++e e++ +e  +lk++i++l+ + ++ qle ++k +++ + e+       ++l++++++le++++++ +e e++  + ++ ++k + + v
  CDO69920.1  99 EARQVEEYQRERERIANERSRLKQQIEQLKGTLEQAQLERKRKIEYDVIAEKVntlptrQELEQSIRALENDMAAIRSEHENQ--NRILHAQKAALDTV 195
                 45677999999999999999999999999999999999999999999999999888888999999999999999999999999..66888888888777 PP

        FapA 428 k 428
                  
  CDO69920.1 196 I 196
                 5 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   4.5e-05     0.054      56     133 ..      96     173 ..      29     240 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.5e-05
  V_ATPase_I  56 eeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeeeeeseeeee 133
                 +e  e+++ ++ ++e +++ +e ++l++++++l+ +le+ + e+++ +e+  + ek++++ +++  e++ ++ ++++++
  CDO69920.1  96 CEA-EARQVEEYQRERERIANERSRLKQQIEQLKGTLEQAQLERKRKIEYDVIAEKVNTLPTRQeLEQSIRALENDMAA 173
                 222.445556667777778888888888888888888888888888888888888888777655222222222222222 PP

>> Ran-binding  RanGTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.8   7.9e-05     0.094      37     132 ..     101     202 ..      91     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.9e-05
  Ran-binding  37 kkvpedkkerkeleklqkkLeskikiispaidLieliaar...GntsLe..saveLtksLkkeieelgerleeaaekeekskk.keeekeelkkvied 128
                  ++v+e ++er+++ + +++L+++i+ ++ +++  +l   r    +++ e  ++++  ++L+++i++l+++++ + +++e++++  +++k++l++vi+d
   CDO69920.1 101 RQVEEYQRERERIANERSRLKQQIEQLKGTLEQAQLERKRkieYDVIAEkvNTLPTRQELEQSIRALENDMAAIRSEHENQNRiLHAQKAALDTVIRD 198
                  6789999999**************************99995532344441245666799***************99999877789999********** PP

  Ran-binding 129 ikeL 132
                  i+ L
   CDO69920.1 199 INVL 202
                  9976 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.2   0.00014      0.17      56     104 ..      70     118 ..      64     171 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      DUF842  56 plqkaqkvvqqEleqfqerLqrcvmvCqdkakdklgpnssekqtakaek 104
                 ++ +a+ ++  Ele+fq +L ++ mvC+ +a++  + ++++++ a+ ++
  CDO69920.1  70 SVDDARDAFILELETFQLSLRKSFMVCEAEARQVEEYQRERERIANERS 118
                 67788888999****************9998876543333333333333 PP

>> Biopterin_H  Biopterin-dependent aromatic amino acid hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.084     1e+02     280     330 ..      81     131 ..      66     132 .. 0.80
   2 ?    9.0   1.0   0.00054      0.65     278     327 ..     124     175 ..      86     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.084
  Biopterin_H 280 klrkfaktlkrpfsvrydpytqsvevldskekikkllkelkeelklleeal 330
                  +l++f  +l+++f v      q  e  +++e+i++  ++lk+++++l+ +l
   CDO69920.1  81 ELETFQLSLRKSFMVCEAEARQVEEYQRERERIANERSRLKQQIEQLKGTL 131
                  57899**********98877777788889999**************99887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00054
  Biopterin_H 278 keklrkfa..ktlkrpfsvrydpytqsvevldskekikkllkelkeelklle 327
                   e+l+     ++l+r+ +++yd  +++v++l +++++++ ++ l++++ ++ 
   CDO69920.1 124 IEQLKGTLeqAQLERKRKIEYDVIAEKVNTLPTRQELEQSIRALENDMAAIR 175
                  33333332114699**********************************9875 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.5   0.00061      0.73     123     219 ..      98     191 ..      78     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00061
     DUF4407 123 lkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrael 219
                 ++++  ++++ e +++ +++++l+++i++++ +l++++ e +++++ +  ++   +    p  +e ++ + a+++++a+++++ +++ r+ ++++ +
  CDO69920.1  98 AEARQVEEYQRERERIANERSRLKQQIEQLKGTLEQAQLERKRKIEYDVIAE---KVNTLPTRQELEQSIRALENDMAAIRSEHENQNRILHAQKAA 191
                 3333444588999999999999999999999999999999999999766555...8889999999***************99988888887777653 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.0    0.0007      0.84      55     119 ..      69     133 ..      66     140 .. 0.90
   2 ?    7.5   3.5    0.0032       3.8      55     121 ..     111     175 ..     110     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0007
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskler 119
                 +s+ ++++ +  ++++ + +l ++  + ++ +++v+e +++ ++i ++ + +k+ +e+l+++le+
  CDO69920.1  69 TSVDDARDAFILELETFQLSLRKSFMVCEAEARQVEEYQRERERIANERSRLKQQIEQLKGTLEQ 133
                 578899999999999999*****************************************999986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0032
     DUF1664  55 eslaatkrhLssridrvdkklde.qkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 e +a+ + +L+++i+++  +l++ q e +++i+ +v + + ++  +++   ++++ ++ le+ ++ i 
  CDO69920.1 111 ERIANERSRLKQQIEQLKGTLEQaQLERKRKIEYDVIAEKVNTLPTRQ---ELEQSIRALENDMAAIR 175
                 568888889999999999988762456666676666555555444444...45566777777666664 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.7    0.0006      0.72      35      70 ..     105     140 ..     101     144 .. 0.90
   2 ?    0.9   0.2      0.54   6.4e+02      39      70 ..     150     180 ..     140     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0006
  Fungal_TACC  35 kyqkkldklelenkslkqeieqLkkqleaerkEKqe 70 
                   yq + +++ +e+++lkq+ieqLk +le ++ E+++
   CDO69920.1 105 EYQRERERIANERSRLKQQIEQLKGTLEQAQLERKR 140
                  69**************************99999876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.54
  Fungal_TACC  39 kldklelenkslkqeieqLkkqleaerkEKqe 70 
                  k++ l +  ++l+q i  L++ ++a r+E ++
   CDO69920.1 150 KVNTLPTR-QELEQSIRALENDMAAIRSEHEN 180
                  55555554.77899999999999998888765 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  13.4     0.005       5.9       9     152 ..      79     224 ..      70     312 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.005
     zf-C4H2   9 tleleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslek..akklyeeykklkeevnelrse..l 103
                 +lele+ +  l+k + ++e+e + +eey++e e + +E+           + i++l  ++++a+ e+++++e   + ++++   + ++e+++  +   +
  CDO69920.1  79 ILELETFQLSLRKSFMVCEAEARQVEEYQRERERIANERSRLK-------QQIEQLKGTLEQAQLERKRKIEYdvIAEKVNT-LPTRQELEQSIRAleN 169
                 579999*********************************8644.......45555555555666555555443113332222.2223333322222123 PP

     zf-C4H2 104 glekledleeeeeellkeeifekqklk...............aaavelkkesstapappappts 152
                  +  +++ +e+++ +l+ +                       +   ++++ sstap+p   +t+
  CDO69920.1 170 DMAAIRSEHENQNRILHAQK-----AAldtvirdinvlrlmgK---DSAEDSSTAPTPAP-ETQ 224
                 33333444444443332222.....112233344444433220...22223333333322.222 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.7    0.0034       4.1      23     106 ..     101     201 ..      81     211 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0034
       TMPIT  23 qkleelsklqskcskeikkqkkrlkelksslkklkksvk..................eeeeeeveelkeelkerkkvlkevesllpkknglylklvlGn 103
                 +++ee+++  +++++e ++ k+++++lk +l++ + + k                  +e e+ ++ l+++++ +++  ++ + +l +++   l  v+ +
  CDO69920.1 101 RQVEEYQRERERIANERSRLKQQIEQLKGTLEQAQLERKrkieydviaekvntlptrQELEQSIRALENDMAAIRSEHENQNRILHAQKA-ALDTVIRD 198
                 556666777777777777777777777777777666544445555555555555544666777777777777777776666666555543.35555555 PP

       TMPIT 104 vnv 106
                 +nv
  CDO69920.1 199 INV 201
                 555 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.046        54      96     125 ..      79     108 ..      72     113 .. 0.87
   2 ?   10.0   9.8   0.00053      0.64      16      93 ..     114     189 ..     108     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.046
  CENP-F_leu_zip  96 vseLeslnsslenlleekEqekvqmkeesk 125
                     + eLe+ ++sl++     E+e +q++e + 
      CDO69920.1  79 ILELETFQLSLRKSFMVCEAEARQVEEYQR 108
                     78*******************999998765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00053
  CENP-F_leu_zip  16 erkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkq 93 
                       + + Lk+++e+L+  le+++ ++   ++e +   ++v+tl +  +el+++ r le d++a+rse e+ ++ l  ++
      CDO69920.1 114 ANERSRLKQQIEQLKGTLEQAQLERK-RKIEYDVIAEKVNTLPTR-QELEQSIRALENDMAAIRSEHENQNRILHAQK 189
                     567889*************9998865.567888999999999986.789********************999887766 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.2    0.0023       2.8      32      95 ..      80     142 ..      74     153 .. 0.86
   2 ?    2.4   0.7      0.16   1.9e+02      23      85 ..     158     198 ..     147     208 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0023
        YlqD  32 ldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgsev 95 
                 l+ e  qL++ +  ++ e++  ++++ ++ +e++++e+s+++++++ql+  leq q Le    +
  CDO69920.1  80 LELETFQLSLRKSFMVCEAEARQVEEYQRERERIANERSRLKQQIEQLKGTLEQAQ-LERKRKI 142
                 57788899999999999****9********************************86.5555555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.16
        YlqD  23 qqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleq 85 
                 q+l+++i++l++                       +++i+++ e++ + ++++k+ l+  +++
  CDO69920.1 158 QELEQSIRALEN----------------------DMAAIRSEHENQNRILHAQKAALDTVIRD 198
                 344444444444......................44455555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1604  (0.089464); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 2301.76
//
Query:       CDO69921.1  [L=126]
Description: hypothetical protein BN946_scf184568.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-14   51.6   5.6    1.3e-13   51.1   3.9    1.8  2  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   3.9   7.4e-18   1.3e-13       2      66 ..      25      84 ..      24      86 .. 0.92
   2 ?   -0.3   0.0     0.083   1.5e+03      49      57 ..     105     113 ..      89     123 .. 0.58

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 7.4e-18
      DUF202  2 dglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrq 66
                + +AnERTfL+Wl+++++l++l+++ll+f   g++    +i ++++  +++++++++l+++++r+
  CDO69921.1 25 VAFANERTFLSWLHFTVVLGGLAVGLLNF---GDKVG--RISAAMFSFVAMAVMVYALYTFHWRA 84
                679*************************8...66655..9**********************997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.083
      DUF202  49 vlgiltllv 57 
                  +++l+++v
  CDO69921.1 105 CVALLIAIV 113
                 333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 883.59
//
Query:       CDO69922.1  [L=154]
Description: hypothetical protein BN946_scf184568.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.002   18.1  10.6       0.33   11.0   4.3    2.2  2  CX9C        CHCH-CHCH-like Cx9C, IMS import disulfide relay-s
     0.0042   17.2  10.1      0.011   15.8   3.5    2.5  2  CHCH        CHCH domain
  ------ inclusion threshold ------
       0.16   12.3   6.3         12    6.3   0.3    2.1  2  DB          DB module
       0.91    9.9   4.4        4.2    7.8   0.6    2.3  2  DUF2655     Protein of unknown function (DUF2655)
        2.2    8.7   9.7         33    4.9   0.5    2.7  2  Pet191_N    Cytochrome c oxidase assembly protein PET191
        7.5    6.9  10.6       0.83    9.9   4.1    2.1  2  COX6B       Cytochrome oxidase c subunit VIb


Domain annotation for each model (and alignments):
>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.4   0.00012      0.35       6      41 ..      46      80 ..      44      82 .. 0.92
   2 !   11.0   4.3   0.00011      0.33       6      40 ..      88     121 ..      85     124 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
        CX9C  6 kyCpkefeaYhkCvssnqswpekCkeqkkeLakCik 41
                +yC +  e +  C + n ++p++C ++ + ++ C++
  CDO69922.1 46 AYCKDYNEDFMLCKAEN-PDPAHCLKEGRRVTRCAQ 80
                689999999999*9998.****************97 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
        CX9C   6 kyCpkefeaYhkCvssnqswpekCkeqkkeLakCi 40 
                  +C +efe+  +C+++n +++  C +  + L+kC+
  CDO69922.1  88 ENCLSEFEKHWNCLENN-NQYYPCRKDERVLNKCV 121
                 69**************9.78888***********7 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.5     0.011        32      21      33 ..      47      59 ..      45      61 .. 0.81
   2 !   15.8   3.5   3.7e-06     0.011       1      34 [.      90     122 ..      90     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
                TTHHHHHHHHHHH CS
        CHCH 21 kCrkefeafkeCv 33
                 C++++e f+ C+
  CDO69922.1 47 YCKDYNEDFMLCK 59
                5999999999887 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.7e-06
                 THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHC CS
        CHCH   1 CgeefkeylkClkdnsdefskCrkefeafkeCvk 34 
                 C+ ef +++ Cl++n++    Crk  + +++Cv 
  CDO69922.1  90 CLSEFEKHWNCLENNNQ-YYPCRKDERVLNKCVF 122
                 ****************9.**************96 PP

>> DB  DB module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3     0.004        12      27      67 ..      41      79 ..      29      82 .. 0.80
   2 ?    6.0   6.8    0.0048        14       9      67 ..      66     121 ..      58     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.004
          DB 27 lllkkekcelkelakllkCaaqgrdhseCCkkkgvpgekCl 67
                +++  + c+ ++ ++++ C a++ d  +C k+ +   ++C 
  CDO69922.1 41 AFFLGAYCK-DYNEDFMLCKAENPDPAHCLKEGRRV-TRCA 79
                567788899.9999999********99998876655.5675 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0048
          DB   9 eeClelCsfetiekealelllkkekcelkelakllkCaaqgrdhseCCkkkgvpgekCl 67 
                  +Cl+  +  t  ++ l ++  +e+c  +e++k ++C+++++   +C k+++v  +kC+
  CDO69922.1  66 AHCLKEGRRVTRCAQDL-ITKLRENCL-SEFEKHWNCLENNNQYYPCRKDERVL-NKCV 121
                 56666554444444434.677788898.99999999999999999999999999.8995 PP

>> DUF2655  Protein of unknown function (DUF2655)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.6    0.0014       4.2      32      54 ..      59      81 ..      46      90 .. 0.85
   2 ?    3.5   0.2     0.029        87      34      53 ..     103     122 ..      97     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
     DUF2655 32 kdcnpqpanclkdqyvlrhccvd 54
                k  np+pa clk+   +  c+ d
  CDO69922.1 59 KAENPDPAHCLKEGRRVTRCAQD 81
                778*********99888888655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.029
     DUF2655  34 cnpqpanclkdqyvlrhccv 53 
                  n q   c kd+ vl +c+ 
  CDO69922.1 103 NNNQYYPCRKDERVLNKCVF 122
                 5788899*********9976 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.5     0.011        33      39      58 ..      44      63 ..      33      70 .. 0.81
   2 ?    3.0   9.5     0.043   1.3e+02       4      53 ..      48     100 ..      46     119 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
    Pet191_N 39 lpeeCkqlrkayfeCkrgll 58
                l + Ck++ ++++ Ck +  
  CDO69922.1 44 LGAYCKDYNEDFMLCKAENP 63
                5678************8765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.043
    Pet191_N   4 CkdlrealaeClqks....dCvkkerktpkeClkekaeelpeeCkqlrkayfeC 53 
                 Ckd  e+++ C  +     +C+k++ ++++ C ++  ++l e+C +  ++  +C
  CDO69922.1  48 CKDYNEDFMLCKAENpdpaHCLKEG-RRVTRCAQDLITKLRENCLSEFEKHWNC 100
                 6666666666665542222455444.4466666666666666666444444444 PP

>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.5      0.12   3.7e+02      24      58 ..      50      83 ..      40      88 .. 0.65
   2 ?    9.9   4.1   0.00028      0.83       8      46 ..      86     124 ..      79     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
       COX6B 24 dkkgeekae..kkeeqdekkCkaekkeyesnCaksWv 58
                d +++  ++  k e+ d ++C +e ++    Ca++ +
  CDO69922.1 50 DYNED--FMlcKAENPDPAHCLKEGRRVTR-CAQDLI 83
                44433..22357777788888888887744.777655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00028
       COX6B   8 qrkaCwearddyfkCldkkgeekaekkeeqdekkCkaek 46 
                  r++C +++++ ++Cl+++++  + +k+e   +kC  ek
  CDO69922.1  86 LRENCLSEFEKHWNCLENNNQYYPCRKDERVLNKCVFEK 124
                 589******************888899999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1152.08
//
Query:       CDO69923.1  [L=150]
Description: hypothetical protein BN946_scf184568.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1125.67
//
Query:       CDO69924.1  [L=177]
Description: hypothetical protein BN946_scf184568.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-15   55.9   0.2    1.5e-14   54.0   0.2    1.8  1  DUF498    Protein of unknown function (DUF498/DUF598)


Domain annotation for each model (and alignments):
>> DUF498  Protein of unknown function (DUF498/DUF598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.2   8.3e-19   1.5e-14       2      88 ..      56     165 ..      55     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 8.3e-19
                 EEEESSEEEE.TTEEESSEEEE-SSSEEE-TH.CS.TTCEECHHHHHH........................CT..T..SEEEEE-TTS-----HHHHH CS
      DUF498   2 daygeggfel.ngvkysgsllvlpeeafawdv.ak.aedlteeslell........................ellepkpellilGtGkrqlplspevre 73 
                 + ++++g++l +g  +s+++++l +++f w+v +k ++++++e++e +                              pe+l+lGtG+r+ +l+ ++r+
  CDO69924.1  56 KTITPNGIQLtDGLILSSACIFLDGKVFLWNVpQKlWDGWKPEHFEIFetvvpkpgmrssrgvrtavcsrsiG----MPEILLLGTGERVEMLPTALRQ 150
                 678899****9*******************977999*****************************99986443....49******************** PP

                 HHHCCTSEEEEE-HH CS
      DUF498  74 alnelgigvevmdtr 88 
                 +l + g++v++m+t 
  CDO69924.1 151 HLMRIGVQVDIMNTV 165
                 *************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1277.63
//
Query:       CDO69925.1  [L=811]
Description: hypothetical protein BN946_scf184568.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-27   93.3   2.7      2e-26   92.0   2.7    1.7  1  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
    0.00012   22.0   0.0     0.0006   19.8   0.0    2.2  2  Lip_prot_lig_C   Bacterial lipoate protein ligase C-terminus
       0.01   15.8   0.0      0.026   14.4   0.0    1.7  1  BPL_LplA_LipB    Biotin/lipoate A/B protein ligase family
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.19   10.6   0.0    1.3  1  CP_ATPgrasp_2    Circularly permuted ATP-grasp type 2


Domain annotation for each model (and alignments):
>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   2.7   4.5e-30     2e-26       1      80 []     112     190 ..     112     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 4.5e-30
  SANT_DAMP1_like   1 yaFakfnkkvevpeytdeeYeellkeedWtkeetdyLfdlckeydlrfvviaDryelekkkkrsledlkeryYsvarkll 80 
                      y+Fak+n++ +++ y+++eY++ll++++WtkeetdyLf+++++yd rf+v++Drye+  + + s   l +ry+sv+rkl+
       CDO69925.1 112 YPFAKYNIQPQHYVYSQDEYSRLLEDPKWTKEETDYLFEMVRQYDARFYVVHDRYEFP-SPEGSSRSLEDRYFSVCRKLV 190
                      89*******************************************************6.55666666677*******995 PP

>> Lip_prot_lig_C  Bacterial lipoate protein ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   5.1e+03      68      84 ..     660     676 ..     651     677 .. 0.86
   2 !   19.8   0.0   1.3e-07    0.0006       1      55 [.     722     780 ..     722     783 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                     CHHHHCCTHHHHHHHHH CS
  Lip_prot_lig_C  68 dlseyfggieleellel 84 
                     +l++y ++++ +++++ 
      CDO69925.1 660 NLQQYHQSLTHDDFVNA 676
                     689***********986 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.3e-07
                     --EESEEEEEEETTEEEEEEEEEETTEEEEEEEEE....SBSSSSHCHHHHHHHTTSBS CS
  Lip_prot_lig_C   1 spefnvkkkkrfdwGtvevrldvekgiIkdikiyG....DffgpkdieeleekLigvky 55 
                     +pef+++ +krf+wGt  + l  ++giI +++++     D   +  +e+l+++L+g ky
      CDO69925.1 722 TPEFTYEIQKRFSWGTTFADLRSKHGIILSCSFSHpegiDANLQTGLEKLAQALEGEKY 780
                     69******************************974333577778888888888888887 PP

>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.9e-06     0.026       9     128 ..     524     628 ..     518     630 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.9e-06
                    HHHHH..GCGGG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH......HHTT-TTEEEETTTEEEET CS
  BPL_LplA_LipB   9 ntllkeslnsselesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealgyrdskpgiegipvfikwpnDlyvn 104
                    n++ ++++n+     +g+ ++rr +gG  v+h+  g+ ++s+ l       + +  ++ + ++v++++++l          g+ +++  +nD+ v 
     CDO69925.1 524 NQNPWKEVNLLASRRTGIPFIRRHSGGGTVYHD-LGNTNFSIHLP------RASFDRHATAQVVMKAVRSL----------GVDASVNDRNDICVA 602
                    5566788999999999*****************.9*********9......3344488899**********..........555555579****** PP

                    TEEE..EEEEEEEEETTS-EEEEEEE CS
  BPL_LplA_LipB 105 grKl..aGiavtstrgktlhhivigv 128
                    ++K+  + +a + ++ +  hh+++++
     CDO69925.1 603 KEKIsvSCSAYKIVKDRAYHHGTMLI 628
                    ***96566666666677777777765 PP

>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.3e-05      0.19      40     104 ..     118     182 ..     106     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.3e-05
                    TSS-GG.GGG-TT--GGGTT---GGG-S-SEEEEEEEE.SSS-EEEEEEE-SS--..-HHHHHHHHH CS
  CP_ATPgrasp_2  40 gvlPaelvegspgflrelkgvkppggvrlhiaavDLvrdedgrwlVlednlraPs..GvgYalenRe 104
                    ++ P++ v+++ ++ r l++ k    +  + + +++vr+ d r++V++d+ + Ps  G +  le+R 
     CDO69925.1 118 NIQPQHYVYSQDEYSRLLEDPKWT--KEETDYLFEMVRQYDARFYVVHDRYEFPSpeGSSRSLEDRY 182
                    6779999*********99987777..55566789*****************9876559999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 5233.59
//
Query:       CDO69926.1  [L=69]
Description: hypothetical protein BN946_scf184568.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-17   62.7   1.0    3.3e-17   62.4   1.0    1.1  1  MWFE      NADH-ubiquinone oxidoreductase MWFE subunit


Domain annotation for each model (and alignments):
>> MWFE  NADH-ubiquinone oxidoreductase MWFE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   1.0   1.9e-21   3.3e-17      14      55 .]       1      42 [.       1      42 [. 0.99

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.9e-21
        MWFE 14 mfgitgaglskirklqnggkraRhsvdqWdrqvmdRDrrLtG 55
                mfg+ g++l+  ++lqn+gk+ Rh +d+Wd+++mdRDrrLtG
  CDO69926.1  1 MFGAAGTLLNTSKRLQNQGKPVRHGLDAWDEMMMDRDRRLTG 42
                9****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 509.91
//
Query:       CDO69927.1  [L=572]
Description: hypothetical protein BN946_scf184836.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0022   17.6   0.0     0.0044   16.6   0.0    1.4  1  DUF4218   Domain of unknown function (DUF4218)


Domain annotation for each model (and alignments):
>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.5e-07    0.0044      38      83 ..     276     320 ..     269     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.5e-07
     DUF4218  38 vHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsi 83 
                  HL++H ++  +l GPv++ + y+ eR+   ++++vr++ + +G +
  CDO69927.1 276 HHLAMHYPEIFRLFGPVYAWWLYAHERF-NGMQEKVRTNGKGDGEM 320
                 6*************************96.67899999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4183.71
//
Query:       CDO69928.1  [L=525]
Description: hypothetical protein BN946_scf184836.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.24    9.6   0.3       0.34    9.1   0.3    1.1  1  COG6        Conserved oligomeric complex COG6


Domain annotation for each model (and alignments):
>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   1.9e-05      0.34      43     101 ..      40      98 ..      36     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 1.9e-05
        COG6  43 aeqLkriesdveklnelcdemkkklssakeetsdlleeaeeLkeekkklelkqkllkaf 101
                 +++L+r+++ v+ +++l +e+++  +sa+e+ + l +++e L++e+++++ + k l+a+
  CDO69928.1  40 QQNLERLKAAVTGIETLKEELREVRRSAREREAILYSKTEVLHAELEDAKRRIKKLEAL 98 
                 789*************************************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3890.25
//
Query:       CDO69929.1  [L=1560]
Description: hypothetical protein BN946_scf184836.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-36  123.7  34.5    8.9e-07   29.5   2.1   12.0 12  WD40           WD domain, G-beta repeat
      3e-19   69.1   2.6      0.004   17.4   0.1    7.7  7  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    3.2e-08   33.7   0.1    8.9e-08   32.2   0.1    1.8  1  NACHT          NACHT domain
    0.00045   20.7   1.8     0.0025   18.2   0.2    2.6  2  AAA_16         AAA ATPase domain
    0.00067   18.8   0.0        2.9    6.8   0.0    3.3  3  Coatomer_WDAD  Coatomer WD associated region
     0.0019   17.2   0.4          4    6.3   0.0    4.3  5  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
  ------ inclusion threshold ------
      0.014   14.8   3.4       0.46    9.8   0.2    3.8  4  Nbas_N         Neuroblastoma-amplified sequence, N terminal
      0.019   14.3   0.0       0.27   10.5   0.0    2.2  2  WD40_like      WD40-like domain
      0.039   14.4   0.2       0.17   12.4   0.0    2.0  2  Goodbye        fungal STAND N-terminal Goodbye domain
      0.077   13.3   0.0       0.22   11.8   0.0    1.8  1  AAA_22         AAA domain
       0.16   12.7   0.9       0.63   10.8   0.7    2.1  2  Occludin_ELL   Occludin homology domain
        0.3   10.6   1.9       0.55    9.8   1.1    1.7  2  CENP-K         Centromere-associated protein K


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   2.6e-05      0.04       6      34 ..     867     898 ..     862     898 .. 0.87
   2 !   29.4   0.1   6.5e-10   9.7e-07       4      38 .]     909     944 ..     907     944 .. 0.93
   3 !   29.5   2.1     6e-10   8.9e-07       2      37 ..     949     985 ..     948     986 .. 0.91
   4 !    7.4   0.1    0.0057       8.5      10      38 .]     998    1026 ..     991    1026 .. 0.79
   5 !   11.5   0.0   0.00029      0.43       4      38 .]    1041    1075 ..    1038    1075 .. 0.87
   6 !    8.3   0.0    0.0029       4.4       1      38 []    1079    1114 ..    1079    1114 .. 0.88
   7 ?   -2.8   0.0       9.9   1.5e+04       9      26 ..    1196    1215 ..    1186    1219 .. 0.69
   8 !   15.9   0.9   1.2e-05     0.018       1      38 []    1230    1268 ..    1230    1268 .. 0.88
   9 !   12.9   0.5   0.00011      0.16       1      35 [.    1272    1307 ..    1272    1307 .. 0.90
  10 ?    0.7   0.0      0.75   1.1e+03      13      29 ..    1331    1348 ..    1320    1355 .. 0.79
  11 ?    1.0   0.0      0.62   9.2e+02       9      28 ..    1394    1415 ..    1388    1420 .. 0.78
  12 ?    4.3   0.0     0.054        81       6      26 ..    1451    1471 ..    1446    1479 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
                 EEESS.SS..EEEEEEETTSSEEEEEETTSEE CS
        WD40   6 tltGH.ss..vtslafspdgawlasGsdDgtv 34 
                 tl  H ++  ++++afspd   +a+G++Dgt+
  CDO69929.1 867 TLASHvTNryISAVAFSPDAMCVACGHRDGTI 898
                 5678984459*********************8 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 6.5e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l ++ GH +s+ +++fsp g+ l+sGs +gtv++Wd
  CDO69929.1 909 LLVFVGHtDSILCVSFSPTGKELLSGSSKGTVYVWD 944
                 66899**888****************99*******9 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 6e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +l+ ++ H s+++s+a+s++g++ as+s Dgtvr+W
  CDO69929.1 949 APLHAWKEHsSWICSVAWSHNGKLAASASCDGTVRLW 985
                 689999***777*************99988******* PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0057
                  S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   10 H.ssvtslafspdgawlasGsdDgtvriWd 38  
                  H   v++  f  dg++l sG +D  +++Wd
  CDO69929.1  998 HgAEVCDAVFALDGDLL-SGLWDEMCKVWD 1026
                  643477666777****8.7**********9 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00029
                  EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  +r+l+ H s v+++a+s d+ ++a+G + g++ +W+
  CDO69929.1 1041 TRILE-HdSAVRAVAVSYDSCLVACGLESGKIVLWK 1075
                  67774.9777**************9989*******6 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0029
                  TEEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    1 gqclrtltGHssvtslafspdgawlasGsdDgtvriWd 38  
                  gq +r++ G+s  tslaf p+g + a++   ++  +Wd
  CDO69929.1 1079 GQRVRSFPGQSRLTSLAFYPNGLL-AAAY-EKSFTLWD 1114
                  67899*****88************.5577.99999998 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 9.9
                  SS..SSEEEEEEETTSSEEE CS
        WD40    9 GH..ssvtslafspdgawla 26  
                  G   s+v+ +a+sp g++++
  CDO69929.1 1196 GNprSFVHVVATSPAGNLIL 1215
                  44434488899999999975 PP

  == domain 8  score: 15.9 bits;  conditional E-value: 1.2e-05
                  TEEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40    1 gqclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38  
                  g+c++t+  H s v s+a +s+ g+++++ ++D  vr+W+
  CDO69929.1 1230 GECTHTI-NHsSEVGSVAaWSSTGKLFSCTGKDDAVRVWK 1268
                  6899998.59566*************987799*******6 PP

  == domain 9  score: 12.9 bits;  conditional E-value: 0.00011
                  TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40    1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvr 35  
                  g++++t+tGH  +v ++ f +d + ++s+s++g+++
  CDO69929.1 1272 GEHVGTFTGHsAGVIAVVFTRDEQHVLSASWNGSIH 1307
                  57899*****66688******************995 PP

  == domain 10  score: 0.7 bits;  conditional E-value: 0.75
                  EEEEEEETTSSEEEEE.E CS
        WD40   13 vtslafspdgawlasG.s 29  
                  + ++a+s+d +w+++G s
  CDO69929.1 1331 IDAFAVSSDDQWMLCGvS 1348
                  667899*******99854 PP

  == domain 11  score: 1.0 bits;  conditional E-value: 0.62
                  SS..SSEEEEEEETTSSEEEEE CS
        WD40    9 GH..ssvtslafspdgawlasG 28  
                   H  s+++s+afs d +  ++G
  CDO69929.1 1394 EHqpSFIWSVAFSEDCTRALAG 1415
                  586666*******998876665 PP

  == domain 12  score: 4.3 bits;  conditional E-value: 0.054
                  EEESSSSEEEEEEETTSSEEE CS
        WD40    6 tltGHssvtslafspdgawla 26  
                  + +G ++v+ +afspdg+ l+
  CDO69929.1 1451 SVRGTGPVRRVAFSPDGRALI 1471
                  4568888**********9765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.2e-06    0.0063      20      88 ..     854     923 ..     845     924 .. 0.87
   2 !   17.4   0.1   2.7e-06     0.004      38      92 .]     916     969 ..     911     969 .. 0.92
   3 !   11.3   0.1   0.00022      0.33      37      72 ..     957     992 ..     955    1007 .. 0.83
   4 !    9.1   0.0    0.0011       1.6       9      82 ..    1061    1130 ..    1022    1140 .. 0.75
   5 !    6.8   0.0    0.0054         8      39      81 ..    1200    1241 ..    1189    1247 .. 0.85
   6 !    8.7   0.1    0.0014       2.1      40      87 ..    1241    1288 ..    1237    1293 .. 0.82
   7 ?    0.5   0.0      0.52   7.8e+02      38      58 ..    1455    1475 ..    1450    1480 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.2e-06
  ANAPC4_WD40  20 lvfRlngqrvwtl..eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  l+ R+  ++vw++  +++ +++ ++++a++pd    a ++ dg++ +l+a+++  +  +  +++ ++ c++
   CDO69929.1 854 LIVRVGVENVWSTtlASHVTNRYISAVAFSPDAMCVACGHRDGTIDMLNAQTAAKLLVFVGHTD-SILCVS 923
                  5679999*****98888999********************************999988876666.588876 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.7e-06
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWgen 92 
                    ++ +++++p gk L  + s+g+v + d+ +g  +h+++ +s+  ++++ W+ n
   CDO69929.1 916 TDSILCVSFSPTGKELLSGSSKGTVYVWDVATGAPLHAWKEHSS-WICSVAWSHN 969
                  567899************************************99.6******875 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00022
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  ++s + s+aW+++gkl a a  dg+vrl  + s + 
   CDO69929.1 957 HSSWICSVAWSHNGKLAASASCDGTVRLWRVASPEK 992
                  5667899*********************99987654 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0011
  ANAPC4_WD40    9 LiAlatedgellv.fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82  
                   L+A + e+g++++ +  +gqrv ++     +s+ +sLa+ p+g lLa ay++ +  l d++ g  v++ s ++ +
   CDO69929.1 1061 LVACGLESGKIVLwKKSDGQRVRSF---PGQSRLTSLAFYPNG-LLAAAYEK-SFTLWDVSRGARVKTTSHERAE 1130
                   6777777777766234578888888...677788888888887.66666655.5677787777777777766665 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0054
  ANAPC4_WD40   39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81  
                   s v+ +a +p g+l+ v+y+d e++++++ +g++ h+++ +se
   CDO69929.1 1200 SFVHVVATSPAGNLILVVYED-ELQIHNVTTGECTHTINHSSE 1241
                   5677788899*********98.79*************988776 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.0014
  ANAPC4_WD40   40 evrsL.aWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87  
                   ev s+ aW+  gkl+    +d +vr+ +a +g+ v +++ +s   v  +
   CDO69929.1 1241 EVGSVaAWSSTGKLFSCTGKDDAVRVWKADTGEHVGTFTGHSAG-VIAV 1288
                   5655527*******************************999885.5544 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.52
  ANAPC4_WD40   38 dsevrsLaWkpdgklLavays 58  
                    + vr +a++pdg+ L +  s
   CDO69929.1 1455 TGPVRRVAFSPDGRALIINGS 1475
                   5789************98765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1     6e-11   8.9e-08       3     139 ..     291     450 ..     289     481 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 6e-11
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.......-HCHHHCCCCTS--SSS-C........CHHHHCCSCCCEE..... CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna....rsladllfsqlpepaapvse........vwavllelperlL..... 84 
                 ++l+  aGsGK+t +  +a+ w ++  +q    l   ++++++ +++n+    r+la++l++++p+ +++ ++          +v +++ +rl      
  CDO69929.1 291 LWLHALAGSGKSTIALTVADWWDTKS-DQ---LLGASFFCARDGQRSNVncifRTLAYQLARHFPAFEEQLTKviekdpdlHSSVPVRQLQRLIveplq 385
                 678888***********998666655.55...33444445555555555589*********************88888888666666777776689999 PP

                 .................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTS CS
       NACHT  85 .................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeql 139
                                   ++D+lDe+ +d        + + Ls  i++  l   ++l+t+rp+    +++++
  CDO69929.1 386 avhanakskgtfpahvaVVIDALDECTDDSAV---STILKCLSLHISE--LAPLKFLITSRPEEN--IARGF 450
                 999************************97777...8899999889999..9999********988..44443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.53     8e+02      67     141 ..      80     163 ..      50     165 .. 0.55
   2 !   18.2   0.2   1.7e-06    0.0025      23     152 ..     288     416 ..     274     437 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.53
      AAA_16  67 ipysalaqalareellrqllde........aesaeleawrekleealaavpelagaea....srllellkrllallsrderplvlvl 141
                   ys  ++a+ + +ll  ++++         e+  ++a +e+l + ++ v+e+  +++    +r   ++ +++++++r+e+ ++ +l
  CDO69929.1  80 QKYSEAIEAI-E-TLLSRIESMnnmlnkvqREDGFPQALKERLAALAEKVKEVVKDAEevqsKRRMIQFLKAADYAERTES-WIKTL 163
                 3455566666.3.56666666666666555333344444444444444555554444455557777778888888888776.65555 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.7e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd.....g.gif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelaga 114
                 r +++ l+  +G+GKs+++ ++++ + ++     g  +f +r   ++          +++++r +l  ql+++     ++a+ e+l+++++  p+l+++
  CDO69929.1 288 R-SILWLHALAGSGKSTIALTVADWWDTKsdqllGaSFFcARDGQRS---------NVNCIFR-TLAYQLARH-----FPAFEEQLTKVIEKDPDLHSS 370
                 4.7999*****************977777777774233324444444.........59***55.*******99.....899999999999966666665 PP

      AAA_16 115 ea.srllellkrllallsrder...........plvlvlDdlqwadeasl 152
                  + ++l +l+ + l+      +            + +v+D l+   ++s+
  CDO69929.1 371 VPvRQLQRLIVEPLQAV----HanakskgtfpaHVAVVIDALDECTDDSA 416
                 55633333333333222....2233355667544*********7777553 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0019       2.9     119     215 ..     931    1028 ..     919    1032 .. 0.79
   2 ?    1.7   0.0     0.071   1.1e+02      82     167 ..    1062    1149 ..    1039    1154 .. 0.82
   3 !    5.4   0.0    0.0054       8.1      28      97 ..    1195    1270 ..    1189    1302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0019
                     XXXXXXXX.XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXX.XXXXXXXXXXXXXX CS
  Coatomer_WDAD  119 lLgvksegsvsfYDweqgklvrridvkk..vknVvwsddgelvalvskdtvyilsynleaveeedeeegvedafevlhelsesiksgaWvgdvf 210 
                     lL  +s+g+v+++D+++g  ++  + ++  +  V ws +g+l+a +s d ++ l +     +  +  +g+e   + +  l+    sg W++ + 
     CDO69929.1  931 LLSGSSKGTVYVWDVATGAPLHAWKEHSswICSVAWSHNGKLAASASCDGTVRLWRVASPEKMVVLRHGAE-VCDAVFALDGDLLSGLWDEMCK 1023
                     88889999**************99987658****************8777766666555344456666666.4555555588999999999887 PP

                     XXXXX CS
  Coatomer_WDAD  211 iYtts 215 
                     ++ t+
     CDO69929.1 1024 VWDTR 1028
                     77665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.071
                     XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD   82 favlessksvkifknfkekktksikleyqvdkifg..GalLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtv 167 
                     +a   +s+++++ k+ +++ ++s+  + + +++      lL +  e+s +++D+ +g  v+  + +  + V    dg ++a v  ++v
     CDO69929.1 1062 VACGLESGKIVLWKKSDGQRVRSFPGQSRLTSLAFypNGLLAAAYEKSFTLWDVSRGARVKTTSHERAEAVAFASDGLHIAHVVGQQV 1149
                     555667888999999999999999999999999777877899999999*****************999*********99998876665 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0054
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX.XXX CS
  Coatomer_WDAD   28 lgsieiypqslshnpngrfvlVcgdgeyiiyt.....alalrnkaygkgldfvwvssnr.favlessksvkifknf 97  
                     +g+   +++ ++ +p+g+++lV+ ++e +i +          n +   g+ ++w+s ++ f  + +   v++ k  
     CDO69929.1 1195 VGNPRSFVHVVATSPAGNLILVVYEDELQIHNvttgeCTHTINHSSEVGSVAAWSSTGKlFSCTGKDDAVRVWKAD 1270
                     5777888999999999999999999999999888887556667777778889999976657777778888887654 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.14   2.1e+02     188     212 ..     874     899 ..     851     903 .. 0.78
   2 !    6.1   0.1    0.0031       4.6     170     234 ..     898     958 ..     888     960 .. 0.75
   3 !    6.3   0.0    0.0027         4     186     217 ..     956     988 ..     951     994 .. 0.86
   4 ?   -2.8   0.1       1.6   2.3e+03     267     290 ..    1220    1243 ..    1217    1268 .. 0.68
   5 ?   -0.4   0.0       0.3   4.5e+02     123     204 ..    1389    1472 ..    1373    1477 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
    Ge1_WD40 188 s.liveaafspdGtalatasedGevk 212
                    i+  afspd   +a    dG++ 
  CDO69929.1 874 NrYISAVAFSPDAMCVACGHRDGTID 899
                 3369999****************985 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0031
    Ge1_WD40 170 gelsveeieegllkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhd 234
                 +++ ++++   ll +  h+  i + +fsp G  l   s+ G+v  + v      +   Lh Wk h 
  CDO69929.1 898 IDMLNAQTAAKLLVFVGHTdSILCVSFSPTGKELLSGSSKGTVYVWDV-----ATGAPLHAWKEHS 958
                 444555555566666666659********************9877766.....5566799999985 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0027
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffqvy 217
                 ehs  i + a+s +G   a as dG+v++++v 
  CDO69929.1 956 EHSsWICSVAWSHNGKLAASASCDGTVRLWRVA 988
                 565489999*********************996 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.6
    Ge1_WD40  267 selklWscelWtClqtikfapsie 290 
                   el++ ++ + +C+ ti+ ++++ 
  CDO69929.1 1220 DELQIHNVTTGECTHTINHSSEVG 1243
                  577777777777777777776643 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.3
    Ge1_WD40  123 rviWCPyipeedaeesdddeaskllvltrgdkaeiwsvdmiaskygsgels..veeieegllkieehsliveaafspdGtalat 204 
                  rv W  + p+   ++  +++  + l+     ++ +++++ i+    + + s  + ++ e  l ++ +  +   afspdG al +
  CDO69929.1 1389 RVLWIEHQPSFIWSVAFSEDCTRALAGNAVGEVFLYDLTEIIPPDHTAPRSppPLAVPEHKLSVRGTGPVRRVAFSPDGRALII 1472
                  566666666665555566666666666666666666666555444443333013455567777888888888888888888865 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.21   3.1e+02     228     268 ..     915     955 ..     875     962 .. 0.80
   2 ?    9.8   0.2   0.00031      0.46      47      96 ..     962    1011 ..     953    1025 .. 0.82
   3 ?    0.6   0.1      0.19   2.8e+02       4      77 ..    1006    1081 ..    1003    1115 .. 0.67
   4 ?    1.5   0.0       0.1   1.5e+02      40      73 ..    1395    1427 ..    1356    1437 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.21
      Nbas_N 228 ekdgvfkmslspdgtllavihfsgklsiwdipslkqrgewe 268
                   d ++ +s+sp g  l      g + +wd+ +      w+
  CDO69929.1 915 HTDSILCVSFSPTGKELLSGSSKGTVYVWDVATGAPLHAWK 955
                 57899999999999999999999999999998765555555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00031
      Nbas_N   47 rrvawshdctllayaestgtvrvfdlvgsellvispavslpgdlsyaiag 96  
                    vawsh+  l a a   gtvr++ +   e +v+    +   d  +a+ g
  CDO69929.1  962 CSVAWSHNGKLAASASCDGTVRLWRVASPEKMVVLRHGAEVCDAVFALDG 1011
                  479***********************999999987766666666666655 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.19
      Nbas_N    4 vlasngkllavvqdqcv...eirsakddfgsvigkcqvpkdpnpqwrrvawshdctllayaestgtvrvfdlvgsel 77  
                  v+a +g ll+ + d+     + rs+  d  + i   ++    +   r va s+d +l+a    +g + ++     + 
  CDO69929.1 1006 VFALDGDLLSGLWDEMCkvwDTRSVDWDVEAKIAPTRILE-HDSAVRAVAVSYDSCLVACGLESGKIVLWKKSDGQR 1081
                  6777888888887765411245788888888888887764.456789999999999999988888877766555555 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.1
      Nbas_N   40 kdpnpqwrrvawshdctllayaestgtvrvfdlv 73  
                  ++p   w  va+s dct     ++ g v ++dl 
  CDO69929.1 1395 HQPSFIW-SVAFSEDCTRALAGNAVGEVFLYDLT 1427
                  5555566.59*******99999**********95 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.14   2.1e+02       5      65 ..     879     940 ..     875    1002 .. 0.81
   2 ?   10.5   0.0   0.00018      0.27       9      70 ..    1249    1311 ..    1240    1336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.14
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklld.ddlilvvtlDGti 65 
                 ++ +s+++  ++ G +d ++ +l+ ++  +  ++ + +dS++ v +   ++ +l ++  Gt+
  CDO69929.1 879 AVAFSPDAMCVACGHRDGTIDMLNAQTAAKLLVFVGHTDSILCVSFSPtGKELLSGSSKGTV 940
                 67788888889999999999999999999999999999999888775413356666666655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
   WD40_like    9 skkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsll 70  
                  s  g+l++  gkdd ++v k +++e v  +++ +  vi v +  d+ ++l ++  G i   ++
  CDO69929.1 1249 SSTGKLFSCTGKDDAVRVWKADTGEHVGTFTGHSAGVIAVVFTRDEqHVLSASWNGSIHRGKI 1311
                  78899*************************************988779*********966555 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.17      72     116 ..      57     101 ..      29     105 .. 0.86
   2 ?   -2.0   0.0       3.1   4.6e+03      24     109 ..     134     218 ..     116     224 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
     Goodbye  72 gasmaFgPaslcfnAvsyLikaakkvseiydaieeLfeelsdfle 116
                  +s a +  ++  +A++++++a +k+se+ +aie+L+++++ + +
  CDO69929.1  57 EVSSACPQLQTAVGALLIVLEAYQKYSEAIEAIETLLSRIESMNN 101
                 5666666678899***************************98765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
     Goodbye  24 lssvedllkqieaekdkfeefrekkeklkealkkilspiqllggiaaqgasmaFgPaslcfnAvsy.LikaakkvseiydaieeLfe 109
                 +++v++ +++i+  k+   +  e+ e+  ++l   ++ + l g+i  +    + +Pa+  f A+   + k+ ++++++ d ++eL +
  CDO69929.1 134 AEEVQSKRRMIQFLKA--ADYAERTESWIKTLDWHIRSFVLEGTITLELTVHVRAPAKQGFEAMNTrFDKVDDGIKAVKDGVNELHD 218
                 4455555555555555..555666677777777777777777777777777777788888888755133455666667776666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.22       4     118 ..     287     426 ..     285     444 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.......erpevvfvtlpsst..sskdllrellralglelka...................erls 74 
                 +++il +++ +G+GK+t + +++++ d  +++         +           +   +   ++r l+ +l +   a                   +  +
  CDO69929.1 287 DRSILWLHALAGSGKSTIALTVADWWDTKSDQLLgasffcaR----------DGQrsNVNCIFRTLAYQLARHFPAfeeqltkviekdpdlhssvPVRQ 375
                 578999*******************98653333344444431..........22233444445555544443333355555556666877787775555 PP

      AAA_22  75 seellealeqalrarav.......ielliiDEaqhlrseealeeLrsllnl 118
                 +++l+    qa++a a+       +++++iD  +  + + a++++ ++l l
  CDO69929.1 376 LQRLIVEPLQAVHANAKskgtfpaHVAVVIDALDECTDDSAVSTILKCLSL 426
                 555555444555554445666888888888888886335555555555444 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00042      0.63      20      83 ..      78     144 ..      76     150 .. 0.83
   2 ?   -3.1   0.0       8.8   1.3e+04      17      43 ..     192     218 ..     188     237 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00042
  Occludin_ELL  20 eYkeYkelhaeleevskkfseLerelkelkegsk...eykkieeeilqeykklkkdpeyqekkkrce 83 
                    Y++Y+e  + +e++ ++++ ++++l++ ++++      k++ + + ++ k++ kd+e  + k+r+ 
    CDO69929.1  78 AYQKYSEAIEAIETLLSRIESMNNMLNKVQREDGfpqALKERLAALAEKVKEVVKDAEEVQSKRRMI 144
                   7******************************999887888888899999999999666666555543 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.8
  Occludin_ELL  17 FnkeYkeYkelhaeleevskkfseLer 43 
                   F++  +++ ++ + +++v++ ++eL++
    CDO69929.1 192 FEAMNTRFDKVDDGIKAVKDGVNELHD 218
                   333333333334444444444444433 PP

>> CENP-K  Centromere-associated protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.1   0.00036      0.55      93     174 ..      87     165 ..      50     171 .. 0.80
   2 ?   -2.5   0.0         2     3e+03     168     194 ..     338     364 ..     333     382 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00036
      CENP-K  93 sqLelvlsiiqsknkklkedLkrEqewleeqqeilesLkektkelkkqvvafsektrksaelkekirkikeykeeLltaLge 174
                 + +e +ls i+s n+ l++  +rE  + +  +e l++L ek ke+ k+ +++++k+r+++ lk     +++  e+ +++L++
  CDO69929.1  87 EAIETLLSRIESMNNMLNK-VQREDGFPQALKERLAALAEKVKEVVKDAEEVQSKRRMIQFLKAADYAERT--ESWIKTLDW 165
                 567899999***9999876.69*********************************9999999876655555..666666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
      CENP-K 168 LltaLgefLdehfplpeeeeasvkkkk 194
                 ++++L   L+ hfp  ee+ ++v +k 
  CDO69929.1 338 IFRTLAYQLARHFPAFEEQLTKVIEKD 364
                 68899999******8887766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.14u 0.29s 00:00:01.43 Elapsed: 00:00:00.47
# Mc/sec: 9907.82
//
Query:       CDO69930.1  [L=299]
Description: hypothetical protein BN946_scf184836.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.42   10.8   2.7        1.6    9.0   2.7    2.1  1  Bombesin  Bombesin-like peptide


Domain annotation for each model (and alignments):
>> Bombesin  Bombesin-like peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.7   8.9e-05       1.6       3      13 ..      66      78 ..      65      79 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.9e-05
    Bombesin  3 lWAv..GHlMGKK 13
                +WA    H+MGKK
  CDO69930.1 66 HWAAvaKHFMGKK 78
                8885236*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2104.50
//
Query:       CDO69931.1  [L=318]
Description: hypothetical protein BN946_scf184836.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2248.31
//
Query:       CDO69932.1  [L=162]
Description: hypothetical protein BN946_scf184836.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-48  162.9   0.0    8.1e-48  162.7   0.0    1.1  1  P16-Arc   ARP2/3 complex 16 kDa subunit (p16-Arc)
  ------ inclusion threshold ------
      0.096   13.0   0.0       0.16   12.3   0.0    1.4  1  Utp12     Dip2/Utp12 Family


Domain annotation for each model (and alignments):
>> P16-Arc  ARP2/3 complex 16 kDa subunit (p16-Arc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.0     9e-52   8.1e-48       1     148 []       4     162 .]       4     162 .] 0.93

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 9e-52
                 XXXXXXXXXXXXXXXXXXXXXX...XXXXX---GGGGTHHHHHHHHHHS--HHHHHHHTSS---S-S-HHHH......HHHHHHHHHHHHTS-GGGHHH CS
     P16-Arc   1 afRkidvDaldedkfkeeelap...espeeseaevqqkesevrsllrsgdaeeALkaalknppygakeqaak......eralqlvlevLssikasdiek 90 
                 +fRkid+D++ded++  +el++   ++p+++ ++v+qk+++vrs l +gd+ +AL  +l+++pyg + ++ak      + +lq+++++L+s+k+s+i  
  CDO69932.1   4 SFRKIDIDQYDEDALLVTELYEadpRDPAQALNDVKQKAAAVRSSLAKGDIVAALMLVLEDAPYGPHLDDAKvaslcaNLHLQTLVSILNSTKSSEIPG 102
                 59***********9777777776778999*************************************9999984333334689***************** PP

                 HHHHS-HHHHHHHHHHHHHHTT---..----SHHHHHHHHHHHTT-SHHHHHHTT--X.. CS
     P16-Arc  91 avksldkeeldvLmkYiYkgmesps..ekssavLLsWhekvvevaGvgsIvrvltdrrtV 148
                 +vk+l+++ +d+LmkY+Ykgm+ p   + s++vLL Whek++evaG+g+Ivr++tdrr V
  CDO69932.1 103 VVKALSTDAQDTLMKYLYKGMALPGwgDVSGSVLLGWHEKLTEVAGTGCIVRAMTDRRLV 162
                 ************************999*******************************76 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.16       5      60 ..      88     145 ..      85     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
                 HHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTT...THHHHHHHHHHHHH CS
       Utp12   5 lleevlekippsdirltvlrLpssyvlkLLeflaerlaeksp...hlelllrwlkallr 60 
                 l+ ++l+++++s+i+ +v+ L++    +L+++l + +a  ++     + ll w + l++
  CDO69932.1  88 LV-SILNSTKSSEIPGVVKALSTDAQDTLMKYLYKGMALPGWgdvSGSVLLGWHEKLTE 145
                 44.59****************************99776555565677777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1150.34
//
Query:       CDO69933.1  [L=837]
Description: hypothetical protein BN946_scf184836.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-08   33.9   7.3      0.007   17.2   0.5    4.8  5  WD40         WD domain, G-beta repeat
    1.8e-07   30.9   0.1    3.6e-07   30.0   0.1    1.6  1  F-box-like   F-box-like
    1.4e-06   28.0   0.0    2.8e-06   27.1   0.0    1.5  1  F-box        F-box domain
    0.00055   20.2   0.1        3.2    8.1   0.0    3.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
        2.2    8.4   8.9      0.045   13.7   1.4    2.2  3  UIM          Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.36   1.3e+03       6      32 ..      97     123 ..      93     126 .. 0.77
   2 ?   -3.3   0.0         5   1.8e+04       2      16 ..     153     165 ..     152     172 .. 0.67
   3 !   17.2   0.5   1.9e-06     0.007       9      38 .]     212     245 ..     206     245 .. 0.72
   4 ?   -2.2   0.0       2.7   9.5e+03      12      25 ..     334     347 ..     323     352 .. 0.76
   5 !   15.8   0.1   5.2e-06     0.019       3      38 .]     432     467 ..     431     467 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.36
                 EEESSSSEEEEEEETTSSEEEEEETTS CS
        WD40   6 tltGHssvtslafspdgawlasGsdDg 32 
                 ++  Hss+ ++   p+ ++la+++  g
  CDO69933.1  97 HIPHHSSIAAMHLMPNTTLLAASMQYG 123
                 5566799999999*******9876555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5
                 EEEEEEESSSSEEEE CS
        WD40   2 qclrtltGHssvtsl 16 
                 ++  +++ H  v+s+
  CDO69933.1 153 NPNAEFSPH--VSSV 165
                 667788889..6666 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.9e-06
                 SS.SSEEEEE....EETTSSE...EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtsla....fspdgaw...lasGsdDgtvriWd 38 
                  H + v ++a    ++        +++G+ Dg v++Wd
  CDO69933.1 212 CHeGAVECVAwdrsVD----GsslFVTGGADGRVKLWD 245
                 68777****7664222....1444569*99*******9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.7
                 SEEEEEEETTSSEE CS
        WD40  12 svtslafspdgawl 25 
                 ++ +l+ sp+g+ l
  CDO69933.1 334 NILDLRISPSGDHL 347
                 3889999***9985 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 5.2e-06
                 EEEEEESS.SS.EEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ss.vtslafspdgaw....lasGsdDgtvriWd 38 
                 +++ + +H ++ +tsl      aw    l++Gs  gt+ iWd
  CDO69933.1 432 PVHQFAAHeDGaITSL------AWnstvLVTGSSRGTINIWD 467
                 689999**7447****......55555599**99*******9 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1     1e-10   3.6e-07       5      46 ..       2      42 ..       1      44 [. 0.96

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1e-10
  F-box-like  5 PdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                P E L +I s+L+p dLl+la++C++ +  ++d+   Wrr +
  CDO69933.1  2 PSESLTHITSFLDPPDLLALARTCKQLHAHVADD-NTWRRAY 42
                99*******************************9.****987 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.8e-10   2.8e-06       6      45 ..       1      40 [.       1      43 [. 0.95

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.8e-10
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwrilidsdrlwck 45
                +Pse l hI ++L++ dllal+r++k ++  + +d+ w++
  CDO69933.1  1 MPSESLTHITSFLDPPDLLALARTCKQLHAHVADDNTWRR 40
                7***********************************9986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.78   2.8e+03       8      22 ..      17      31 ..      11      42 .. 0.85
   2 ?    0.5   0.0      0.21   7.6e+02      21      63 ..      78     126 ..      73     144 .. 0.80
   3 !    5.6   0.0    0.0054        19      23      70 ..     198     249 ..     177     262 .. 0.74
   4 !    8.1   0.0   0.00089       3.2      34      70 ..     437     471 ..     431     492 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.78
  ANAPC4_WD40  8 DLiAlatedgellvf 22
                 DL+Ala + ++l+++
   CDO69933.1 17 DLLALARTCKQLHAH 31
                 9*******9999886 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.21
  ANAPC4_WD40  21 vfRlngqrvwtl......eedkedsevrsLaWkpdgklLavaysdgevr 63 
                  v R n +r w+       ++  + s++ +++  p+ +lLa +++ g v+
   CDO69933.1  78 VMRYNLRRRWEYsrnaavTHIPHHSSIAAMHLMPNTTLLAASMQYGVVS 126
                  67888888888877777677778999999***********999988775 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0054
  ANAPC4_WD40  23 Rlngqrvwtl.eedkedsevrsLaWkp..dgklL.avaysdgevrlldaesg 70 
                  R +  r+      d +++ v+++aW    dg+ L + + +dg+v+l da+++
   CDO69933.1 198 RASAARLIRCrLGDCHEGAVECVAWDRsvDGSSLfVTGGADGRVKLWDAKTT 249
                  5555555555545668899******643378766156899********9875 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00089
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +++ed+ ++sLaW+   ++L+ + s g++++ da + 
   CDO69933.1 437 AAHEDGAITSLAWNS--TVLVTGSSRGTINIWDALTF 471
                  467999*******75..7**************99765 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4       2.5   8.8e+03      10      15 ..     116     121 ..     116     121 .. 0.91
   2 ?   -2.9   0.0       2.5   9.1e+03       8      16 ..     593     601 ..     592     601 .. 0.83
   3 ?   13.7   1.4   1.2e-05     0.045       1      17 []     814     830 ..     814     830 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
         UIM  10 lalSlq 15 
                 la S+q
  CDO69933.1 116 LAASMQ 121
                 89***9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
         UIM   8 rAlalSlqE 16 
                 ++l lS+ E
  CDO69933.1 593 YVLMLSRDE 601
                 7899**987 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.2e-05
         UIM   1 dEdedLqrAlalSlqEa 17 
                 ++dedL+ A++lS +Ea
  CDO69933.1 814 EDDEDLRFAIELSIAEA 830
                 69************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 6194.32
//
Query:       CDO69934.1  [L=432]
Description: hypothetical protein BN946_scf184836.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.001   18.5   0.0      0.022   14.1   0.0    2.3  1  Terpene_synth_C  Terpene synthase family, metal binding domai


Domain annotation for each model (and alignments):
>> Terpene_synth_C  Terpene synthase family, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-06     0.022     135     263 ..     154     302 ..     114     306 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-06
  Terpene_synth_C 135 drvskylkeawkelvkaylkeakWreekyvPsfeEylenslvssglpllllaa.lvgmg.d............evtkeafewvas......ypk 208
                       ++ + + +a+++++k+ +++a+ r+++ +Ps+eE++     ++g+p++ +++ +  ++ +            e++k  +++++        + 
       CDO69934.1 154 ASIWRQFARAIESWMKSQVEQARNRSTDEIPSVEEFIVLRRRTIGGPIVEAMVeY-SLDlQipehvwehpvlqEMSKAMIDIMTWpndlcsFNV 246
                      346667778999*****************************************55.77744566655555443234433333332444432333 PP

  Terpene_synth_C 209 lvkalstilRLlnDiasye.reqkrgdvassvecymkehgvseeeAveeikklied 263
                        +a   +l L n +  +  +eq++gd  + v c m e +++ ++Av+ +++++++
       CDO69934.1 247 RRSAPTHLLTLSNRVPCHPqKEQADGDFQNLVFCIMIERDTDLQNAVDILTDMLAQ 302
                      33455667778888887776888888888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3105.31
//
Query:       CDO69935.1  [L=170]
Description: hypothetical protein BN946_scf184836.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1258.57
//
Query:       CDO69936.1  [L=214]
Description: hypothetical protein BN946_scf184836.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.041   13.9   0.4       0.16   12.0   0.1    2.0  2  CrgA            Cell division protein CrgA
       0.17   12.3   0.2       0.49   10.8   0.0    1.7  2  PEN-2           Presenilin enhancer-2 subunit of gamma secret
       0.18   11.5   0.1       0.26   11.0   0.1    1.1  1  Tetraspanin     Tetraspanin family
        2.9    5.8   4.9        3.7    5.5   4.9    1.1  1  Sporozoite_P67  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.34   1.5e+03      34      50 ..     129     145 ..     105     155 .. 0.61
   2 ?   12.0   0.1   3.6e-05      0.16      14      54 ..     166     207 ..     152     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.34
        CrgA  34 yvpvmlglmllGllwlv 50 
                   +++l  +l+ llwl 
  CDO69936.1 129 ARTLFLYGFLFPLLWLA 145
                 33455556666677764 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.6e-05
        CrgA  14 pkaaertpvkakaakpsprwyvpvmlgl.mllGllwlvvyYl 54 
                  +a+e +++ka++++ +++w    m++  +llGl+ +vv+ +
  CDO69936.1 166 SSAEEMQQHKAAHRAAEEKWARRCMCASaVLLGLIVVVVVTI 207
                 336788888999999**********9852689*****99866 PP

>> PEN-2  Presenilin enhancer-2 subunit of gamma secretase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.49       6      41 ..     126     160 ..     122     168 .. 0.81
   2 ?   -1.5   0.0      0.75   3.4e+03      42      65 ..     181     206 ..     169     211 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
       PEN-2   6 lklcrkyflvGfalLPflWlvNvvyffkeaflkeaf 41 
                  +l+r++fl Gf++ P+lWl  +v  f+ ++ ++  
  CDO69936.1 126 RTLARTLFLYGFLF-PLLWLAGMVLVFSPTRYDPDL 160
                 579********975.*******99999888877766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.75
       PEN-2  42 eeqkeirkyvilSai..Galvwlvvl 65 
                 +e+k  r+ +++Sa+  G++v +vv 
  CDO69936.1 181 AEEKWARRCMCASAVllGLIVVVVVT 206
                 44555566666665423555555443 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.7e-05      0.26       4      65 ..     134     211 ..     131     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.7e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXX..................XXX.....................XXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   4 llfffnllfwligivllavGvwlrl..................khaeaalacllsesaedpailaillivvGvllfllgf 65 
                  l  f+  l+wl+g+vl++    +r+                  k+a  a + + ++ + +++++  +livv v++++l++
   CDO69936.1 134 LYGFLFPLLWLAGMVLVFSP--TRYdpdleraqvssaeemqqhKAAHRAAEEKWARRCMCASAVLLGLIVVVVVTIVLAM 211
                  456677789********995..555666666667778899888777888888889999999***9********9999987 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.9   0.00083       3.7     627     681 ..      39     103 ..      22     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00083
  Sporozoite_P67 627 aelGpslvik.nvesdpskvtptqpsnlpqvpts.........gqgngteGkeqqpsagngsgnG 681
                     a    sl++   ++  ps vtptqps l  +            g+ +g + +  +p +++g+g  
      CDO69936.1  39 ASTTSSLTLGaPSPKAPSPVTPTQPSTLTTLTYQndlignfwgGRSQGMQAARPPPGSPDGGGAA 103
                     3346666664147889***********99888777888888878888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1612.05
//
Query:       CDO69937.1  [L=410]
Description: hypothetical protein BN946_scf184836.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3073.53
//
Query:       CDO69938.1  [L=463]
Description: hypothetical protein BN946_scf184836.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-54  184.5   0.0    2.1e-30  105.9   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   1.2e-34   2.1e-30       1     307 [.      41     344 ..      41     346 .. 0.88
   2 !   78.2   0.1   2.9e-26   5.2e-22     341     435 ..     345     440 ..     342     445 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.2e-34
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHH CS
        p450   1 PpgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklR 99 
                 Ppgp+++p++gn++ql + +   + + + +k yg+++  kl ++pv vl++  a++ +l k++++ s+rp+ +ll+   + +++    +  ge+ +k+R
  CDO69938.1  41 PPGPKAIPVLGNVHQLPM-DYQERTFGEWAKMYGDVVYAKLFQRPVLVLNSLRAAQDLLEKRSSKYSSRPRLVLLSE-LMGWDNVITHMPYGERFRKHR 137
                 9****************7.7788889*******************************************99888887.66888888888888******* PP

                 HHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHH CS
        p450 100 rfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpl 197
                 r +   l+s+++l  ++++  +e+  l++      +++   d + ++ + a+ +i++i++g+r+ +lede    + +a+ e + l  ++  +l+++fpl
  CDO69938.1 138 RWMQEGLQSKNALfGYRSVQRRETYTLLA---GLLESP--ADFASHIHRWAVGTIMEITYGHRIHSLEDEYVRIARTATVETV-LAGSPGSMLVDFFPL 230
                 ********996666666666666666555...555667..7889**************************9887888877775.6678888******** PP

                 HTCCSCHH.....HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 198 lkylptkl.....lrklkeavkklkdlldklieerretldsakksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLa 290
                 lk +pt++     +r + +++ ++ +l++   +  ++ ++   + r +f+  l++++   ++  +   +e+++  ++++++aG+dTt ++l+ +++ ++
  CDO69938.1 231 LKGIPTWMpgagfKRNAFRVRGMVRELMNSPYNMVKAAMSHG-NARPSFTTTLIEEMyRLNSI-TPAMEEDIKGAAGVIYAAGTDTTVTVLTTFFLAML 327
                 ******975555578899999999999999999999999999.79***********9433333.58999****************************** PP

                 HSHHHHHHHHHHHHHHC CS
        p450 291 knPevqeklreEidevl 307
                  +P++ +k + E+d v+
  CDO69938.1 328 LHPDALKKAQAELDAVV 344
                 **************998 PP

  == domain 2  score: 78.2 bits;  conditional E-value: 2.9e-26
                 EEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS.CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEE CS
        p450 341 llpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFev 435
                  +p+++t++ + rgy ip +++vi+n++ + +dp+v+p+P++F+peR+ +    + +  + + + FG+G+R C+G+ +A   l l++a++++ F++
  CDO69938.1 345 AIPHNLTEEDEYRGYRIPGNSMVIPNIWKMTQDPSVYPEPQKFRPERWMEMGSrAAELVNPRRMVFGFGRRVCPGREFADTGLWLAMACVISLFDI 440
                 79**********************************************99855756688899999***************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 3019.55
//
Query:       CDO69939.1  [L=310]
Description: hypothetical protein BN946_scf184836.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      0.003   17.6   0.4        3.2    7.9   0.1    2.6  2  DUF3671       Protein of unknown function
     0.0093   15.6   0.7     0.0093   15.6   0.7    1.8  2  RTA1          RTA1 like protein
  ------ inclusion threshold ------
       0.47   10.7  11.1       0.18   12.0   2.7    2.8  2  DUF3397       Protein of unknown function (DUF3397)
        6.2    5.0   8.1       0.29    9.4   2.4    1.6  2  DUF2070       Predicted membrane protein (DUF2070)
        7.8    6.2  13.5        4.6    6.9   0.0    3.0  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00088       3.2      46      72 ..      41      67 ..      30     102 .. 0.79
   2 !    7.5   0.0    0.0011       4.1      40     108 ..     145     257 ..     111     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00088
     DUF3671 46 lllilpvllpliglivpilfeakskks 72
                ++lil++++ ++g + +ilfe+k +++
  CDO69939.1 41 IFLILLAIIRIVGGVTHILFEQKPSNT 67
                7889****************9876533 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
     DUF3671  40 vlkkyglllilpvllpliglivpilfeaksk.............................................kslkkkelevlatsieklytiff 93 
                  l+k g  l+ ++ + ++g+  + + + k+k                                             +  + + l+++++++   ++++ 
  CDO69939.1 145 KLRKIGSALFGVLYVAIVGVTAFCF-QNKHKilkyrrkllsgiaaalpflfvrvlyailsafspsplgfdadgqriAVTSSSPLKTFNSTTGRWEVYLG 242
                 4788899888887777777666665.5556679999999999999999999999999999999999999999999977888888899999999999**9 PP

     DUF3671  94 iilvviillvliYil 108
                 + ++  +++vliY+ 
  CDO69939.1 243 MSVIAEYIVVLIYTS 257
                 999*********986 PP

>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       0.3   1.1e+03      47      69 ..      40      63 ..      22     113 .. 0.74
   2 !   15.6   0.7   2.6e-06    0.0093      80     162 ..     118     201 ..     107     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.3
        RTA1 47 aiYmllgrlilll.geelsllrpk 69
                 i+++l  +i+++ g ++ l+++k
  CDO69939.1 40 WIFLILLAIIRIVgGVTHILFEQK 63
                578888888888877777777432 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.6e-06
        RTA1  80 vvslllqaaGGglaasasssaeaklGeniiiaGla.lQvvvlvvFlllaldFllrvrkskkfkkfllalyaavlliliRsiyRv 162
                 +v+l+l +aGG  a +a+++++ + G+++  +G a + v+ +++ +++a+ F  + +  k  +k+l  ++aa+ ++++R +y +
  CDO69939.1 118 TVALALAIAGGIKAGEAKTQSDLDSGTKLRKIGSAlFGVLYVAIVGVTAFCFQNKHKILKYRRKLLSGIAAALPFLFVRVLYAI 201
                 68999************99999*******9998652799999*************99656789******************976 PP

>> DUF3397  Protein of unknown function (DUF3397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.7   5.2e-05      0.18      37      81 ..      18      62 ..      12      73 .. 0.92
   2 ?    2.5   1.4     0.045   1.6e+02       9      56 ..     160     208 ..     152     212 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
     DUF3397 37 ttpflilavhllseelfgksflpllllvllllaillliiqarkkg 81
                 +p++++a+ l++++ f+++  + +l++l ++ i+ +++++  ++
  CDO69939.1 18 YVPIFFVAIPLVLRHGFTRKAGWIFLILLAIIRIVGGVTHILFEQ 62
                589*********************************999987766 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.045
     DUF3397   9 llvlllvyiivkkfslkk.kkaklkalDvttpflilavhllseelfgks 56 
                  +v + ++ + +k ++ k ++  l  +  ++pfl++ v + + + f+ s
  CDO69939.1 160 AIVGVTAFCFQNKHKILKyRRKLLSGIAAALPFLFVRVLYAILSAFSPS 208
                 3333333333333333343777888888888888888888777777766 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.0      0.27   9.6e+02      79      97 ..      43      64 ..      11     127 .. 0.51
   2 ?    9.4   2.4     8e-05      0.29      29      99 ..     123     210 ..     104     263 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.27
     DUF2070 79 elivviisllaillsall...q 97
                +++++ii +++ ++ +l+   +
  CDO69939.1 43 LILLAIIRIVGGVTHILFeqkP 64
                2222333333333333333332 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 8e-05
     DUF2070  29 gllaflssk................lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall.qal 99 
                  ++a  ++                  +g+ lfg+ +++ + +t  + +  +++l+y+r+l+  ++++l+++++ +l ++lsa+  + l
  CDO69939.1 123 LAIAGGIKAgeaktqsdldsgtklrKIGSALFGVLYVAIVGVTAFCFQNKHKILKYRRKLLSGIAAALPFLFVRVLYAILSAFSpSPL 210
                 2222222223455677888888999999*******************999999***************99999999999998775332 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.5    0.0034        12      23      68 ..      12      52 ..      11      95 .. 0.73
   2 ?    6.9   0.0    0.0013       4.6     116     176 ..     110     170 ..     105     174 .. 0.84
   3 ?   -2.0   0.7      0.69   2.5e+03     125     125 ..     204     204 ..     178     266 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0034
  BPD_transp_1 23 liivllslPsfvlaillvlvfvilsilghlilpviillllsaapyv 68
                  + +++l++P+f +ai+lvl   +  ++g     +i+l+ll ++ +v
    CDO69939.1 12 VAEIVLYVPIFFVAIPLVLRHGFTRKAG-----WIFLILLAIIRIV 52
                  57899*************4444444444.....4444444444443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
  BPD_transp_1 116 lafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlvadilq 176
                    +++g+lg  +l++ ++     g    ea  ++d+++++    +g++l++v++v+++ + a+ +q
    CDO69939.1 110 TRLMGILGTVALALAIA----GGIKAGEAKTQSDLDSGTklrkIGSALFGVLYVAIVGVTAFCFQ 170
                   5789999**********....67777888888888888888889999999999999999988877 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.69
  BPD_transp_1 125 a 125
                   a
    CDO69939.1 204 A 204
                   1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.51
# Mc/sec: 1818.86
//
Query:       CDO69940.1  [L=281]
Description: hypothetical protein BN946_scf184836.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2079.77
//
Query:       CDO69941.1  [L=320]
Description: hypothetical protein BN946_scf184836.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-16   60.5   0.0    2.9e-16   59.9   0.0    1.3  1  SNase        Staphylococcal nuclease homologue
  ------ inclusion threshold ------
      0.039   14.0   0.0       0.32   11.1   0.0    2.4  3  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.2e-20   2.9e-16       2     107 ..     147     262 ..     146     263 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.2e-20
                 EEETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET..........TEEHHHHHHHTTSSEE---BTT..STTTH CS
       SNase   2 vrLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln..........kknineeLvkeGlArvyevyek..neekk 88 
                 +r++g+daPet ++++++qpf  ++  +lk+++ +k v  + + +  D+ gr++  v l+          +k+++ e++++G A+vye+  +       
  CDO69941.1 147 IRIAGVDAPETGHFGRPAQPFSGDSLTWLKSRIEGKFVYCQLVRR--DQFGRIVSAVHLKprlfpgwlatGKDLSVEMLRAGWASVYEQAGAeyGRAGL 243
                 9*********************************77777777777..*****************************************88873445567 PP

                 HHHHHHHHHHHHTT-GGGC CS
       SNase  89 kellkaeeeAkkkrkglWs 107
                 +e+l+++++A+  ++g+W+
  CDO69941.1 244 EEFLRVQQDAQLGKRGIWK 262
                 9*****************8 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.48   4.3e+03      18      35 ..     131     148 ..     128     163 .. 0.74
   2 ?   -2.1   0.0      0.45   4.1e+03      18      36 ..     214     232 ..     212     240 .. 0.78
   3 ?   11.1   0.0   3.5e-05      0.32      41      58 ..     298     315 ..     293     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.48
                  CT---SCHHHHHHHHHHH CS
  HTH_Tnp_Tc5  18 rgipitgelirekAqela 35 
                  r ip+ ++ ++++  +++
   CDO69941.1 131 RRIPVGRSDLKDQTTHIR 148
                  578999999999887775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
                  CT---SCHHHHHHHHHHHH CS
  HTH_Tnp_Tc5  18 rgipitgelirekAqelas 36 
                  +g+ ++ e++r+ +  +++
   CDO69941.1 214 TGKDLSVEMLRAGWASVYE 232
                  7999999999998888764 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 3.5e-05
                  CT-TT-S--CHHHHHHHH CS
  HTH_Tnp_Tc5  41 lgepdfkaSkgWldrFkk 58 
                   g++++ aS+gWl++F++
   CDO69941.1 298 DGSDQPPASSGWLRNFIR 315
                  67899***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2675.68
//
Query:       CDO69942.1  [L=521]
Description: hypothetical protein BN946_scf184836.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-28   99.3   0.0    4.5e-28   98.2   0.0    1.6  1  Flavodoxin_1   Flavodoxin
    8.6e-19   68.0   0.0    1.3e-18   67.4   0.0    1.2  1  FAD_binding_1  FAD binding domain
    1.4e-14   54.6   0.0    3.3e-14   53.4   0.0    1.7  2  NAD_binding_1  Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.077   13.2   0.0       0.18   12.0   0.0    1.6  1  Flavodoxin_5   Flavodoxin domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0     1e-31   4.5e-28       1     133 [.      31     158 ..      31     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 1e-31
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   ilY++etG+++++A +la++ ++  + a+v+s++ y   ++e+ +e l+l+v+sT+g G  p  +  + +  l      l ++ ++++ favfglGd
    CDO69942.1  31 ILYATETGTAQDVADRLARLCRSLRICAQVHSMDAYP--PEELINESLVLFVVSTTGSGHEPRAMT-PLWTMLLRAD--LPEDLFEDLAFAVFGLGD 122
                   89***********************************..679999*****************7777.8888888885..66779************* PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTST CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegdednq 133
                   saye+Fc+ +k l  +l +lGa+ ++  +e+d++++
    CDO69942.1 123 SAYEKFCWPAKLLSRRLLQLGASEICARGEADDQHH 158
                   *********************************986 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0     3e-22   1.3e-18       7     143 ..     221     356 ..     215     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 3e-22
                    B-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEHHHHHH CS
  FAD_binding_1   7 kvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTlrqalk 102
                    +  la+v+ nr+Lt+ +  + v h+e++  d+++++++Gd   ++p+   ++V+ +l ++g ++ ad+++++++  ++++  ++++++tTlr++++
     CDO69942.1 221 EYHLATVTCNRRLTAEDWYQDVRHFEFSF-DEDVHFNPGDVAVIHPEALAADVDSFLACIGYANIADDPIDIRHTLQDQSLPDHLPTTTTLRELFT 315
                    556899*********************98.568***************************************988778999*************** PP

                    HTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHH CS
  FAD_binding_1 103 yylditgppskqlleaLaefaseeeekqkLekLssdegake 143
                    +yldi   p++ ++  L +fa++e e++kLe   s+ega +
     CDO69942.1 316 RYLDINAVPRRSFFAVLKHFAEDELEREKLEEFLSEEGALQ 356
                    *******************************9999988765 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.8e+04      23      37 ..      24      38 ..      15      50 .. 0.65
   2 !   53.4   0.0   7.5e-18   3.3e-14       2     108 ..     377     484 ..     376     485 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
                   TTCSEEEEEEEESSG CS
  NAD_binding_1 23 kdktkvvlvyGnrte 37
                   +d++ ++++y+++t 
     CDO69942.1 24 HDQRTLTILYATETG 38
                   466777777777654 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 7.5e-18
                    EEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HSSTT CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....lkkee 92 
                    i++GtGiaP+r+++++++++    ++ +l++G+r+   d+ y ee+e++  + +g+l++ a+ sr+  +   ++ +vq+ ++e+++     +++ +
     CDO69942.1 377 IGPGTGIAPMRAIIQERIHD--GIHENTLYFGCRSASkDHHYGEEWEQY--ASEGKLTYRAAFSRDGPEG-VQRTYVQHLIREDSARicelIEERG 467
                    89*****************8..6799********9877***********..7788889999977776665.79*************9999*9**** PP

                    EEEEEEC.SHHHHHHHH CS
  NAD_binding_1  93 thvyvCG.ppgMikavr 108
                    + vy+ G   +M +avr
     CDO69942.1 468 AWVYISGsSNKMPAAVR 484
                    *******8888877765 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.1e-05      0.18       2      60 ..      31      90 ..      30      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
  Flavodoxin_5  2 ilYsSrdGqTkkiaeriaeelree..gelvdvedvekesedlesydavvigasvyygkllp 60
                  ilY++ +G+ + +a+r+a  +r+   +++v  +d+  + e+l +   v+++ s   ++++p
    CDO69942.1 31 ILYATETGTAQDVADRLARLCRSLriCAQVHSMDAY-PPEELINESLVLFVVSTTGSGHEP 90
                  9*********************99998888888874.666777777777777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3587.85
//
Query:       CDO69943.1  [L=607]
Description: hypothetical protein BN946_scf184836.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-41  140.9   0.5    9.7e-41  140.1   0.5    1.3  1  Beta-lactamase  Beta-lactamase
    1.8e-05   25.1   0.1    6.3e-05   23.4   0.1    1.8  1  DUF3471         Domain of unknown function (DUF3471)
  ------ inclusion threshold ------
       0.15   12.1   0.0       0.34   10.9   0.0    1.6  1  AvrPto          Central core of the bacterial effector protei


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.5   1.6e-44   9.7e-41       7     317 ..      63     406 ..      57     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 1.6e-44
                     HHHHHTTESEEEEEEEETTEE.....EEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTT..............SSCTTSBGGGT CS
  Beta-lactamase   7 elmaqggipGvavavvrdgkv.....vldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeG..............kldLddpVsky 82 
                     el  + +ipGv+++vvr +        ++++g+  + ++g  +t+dtlf +aS++K+f a+ v  l+++               +ld+d++Vs  
      CDO69943.1  63 ELRNNASIPGVSLGVVRLNGNkrplaQVAAWGRKTEDGDGHDLTTDTLFCLASCSKAFLATSVGLLMDDYahgrnvtplprgvsRLDWDTKVSAI 157
                     55556789999999998554411222355666778999999**********************9999999788888888888888********** PP

                     ST....TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTT CS
  Beta-lactamase  83 lP....efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeil 173
                     lP     ++   +++ ++rd   H sGlp++++s+++ + +   ++l+ +++ l+ +y+ ++kw+Y+n  y l ++++e+ + ++++++++++++
      CDO69943.1 158 LPgdweLDDEWSTQRASVRDIFGHVSGLPRHDYSYHPGQSP---KDLINRMRDLRTAYELREKWSYNNQMYILGAHVIEHFANTTYADFISRRLF 249
                     ****97444456788****************9999999998...799************************************************ PP

                     TTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC...TTTBEEEEHHHHHHHH......HHHHHCCSSSSHHHHHHH........H CS
  Beta-lactamase 174 rpLgmkdtelgppesgdprdaagytgngpearappanlpaeae...gagglistardlarfl......glalegglllsaetlaql........t 251
                     + Lgm   ++ p e+ + r  +    +++++r p    +  a+   gagg+is+a+d+ ++l      g      + ++  +            t
      CDO69943.1 250 KSLGMSTSTIVPSEALASRKVTDT-WTKDGRRIPFWFTDESAYlgaGAGGVISSAEDMIKWLavllneG------ADPRSGETVLPrsvydavtT 337
                     *****8777776666544443333.45555555555555555588*****************6444441......44443333333345544553 PP

                     HHHTSEEEECTTEEEEC...ECSSEEEEECCHTEEEEEEE..STEEEEEEEECGGTEEEEEEESBCSSHHH CS
  Beta-lactamase 252 aklssgttrpagiragl...glGwvladktgapgtfghtG..ggygtyvfvdpeanlvvavltnrdppned 317
                     a+ +    + ++++ g    g+Gw+   +++   +++htG  +g++t+ ++   +n+++++l n d + +d
      CDO69943.1 338 ARHVVLGQPSPPYGSGIvgyGMGWMQWTYKD-VPIVSHTGgiPGFSTMTAFSKSRNVGMVILINADEK-AD 406
                     3333333333333333354488888888888.6********************************998.43 PP

>> DUF3471  Domain of unknown function (DUF3471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   1.1e-08   6.3e-05       4      84 ..     452     557 ..     449     569 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.1e-08
     DUF3471   4 anttpslpleaYvGtYedpgygtvtvslegdrLf.......................lrfdrtprlqge..........LehyhgdfFlarwddrs..s 67 
                 a ++psl leaY G Y dpgyg +t+   + +                                               + h +gd+F +++++     
  CDO69943.1 452 ALKPPSLDLEAYEGAYDDPGYGAITICAPKSKSRactavlddfaslgpltdttphlyG----------SfrtlwsshvrFIHHSGDTFNVTFTQIFpqG 540
                 5679**********************99999777778888888888875544444443..........44555555666**********9996644677 PP

     DUF3471  68 eadakveFeldedgkvt 84 
                 +++ +  Fe+ e+g+ +
  CDO69943.1 541 YGRNTSAFETYESGEGE 557
                 77777777777777655 PP

>> AvrPto  Central core of the bacterial effector protein AvrPto
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.7e-05      0.34       4      49 ..     168     213 ..     165     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.7e-05
      AvrPto   4 tssqllsvrhqlaesagvprdqhefvsnqapqslrnrynnlyshtq 49 
                  s+q  svr  +   +g+pr ++ +   q+p+ l nr  +l +  +
  CDO69943.1 168 WSTQRASVRDIFGHVSGLPRHDYSYHPGQSPKDLINRMRDLRTAYE 213
                 588999********************************99976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4123.84
//
Query:       CDO69944.1  [L=991]
Description: hypothetical protein BN946_scf184836.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-50  170.3   1.1    2.6e-49  167.8   1.1    1.9  2  SNF2_N        SNF2 family N-terminal domain
    6.2e-18   65.2   0.0    1.5e-17   63.9   0.0    1.7  1  Helicase_C    Helicase conserved C-terminal domain
    5.5e-05   23.2   0.0    0.00012   22.2   0.0    1.7  1  ResIII        Type III restriction enzyme, res subunit
    0.00036   20.3   0.0    0.00062   19.5   0.0    1.3  1  SWI2_SNF2     SWI2/SNF2 ATPase
  ------ inclusion threshold ------
      0.064   13.4   1.1       0.16   12.1   1.1    1.7  1  FYVE          FYVE zinc finger
      0.069   13.0   2.0        0.1   12.5   0.2    2.0  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
       0.16   11.9   2.0       0.48   10.4   2.0    1.8  1  zf-RING_5     zinc-RING finger domain
       0.25    9.9  11.8       0.38    9.3  11.8    1.2  1  TFIIF_alpha   Transcription initiation factor IIF, alpha subu
       0.48   10.6   4.1       0.16   12.1   0.9    1.9  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        1.2    9.5   3.6       0.61   10.5   0.7    2.0  2  zf-RING_2     Ring finger domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.025        45       1      18 [.     173     190 ..     173     191 .. 0.91
   2 !  167.8   1.1   1.5e-52   2.6e-49      50     350 .]     185     503 ..     177     503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.025
                 HHHHHHHHH......... CS
                 xxxxxxxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkReqnlqd 18 
                 +Q+ +vkwm+  e+n+ +
  CDO69944.1 173 HQIIGVKWMVDQERNTPH 190
                 9********999999875 PP

  == domain 2  score: 167.8 bits;  conditional E-value: 1.5e-52
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla 148
                 e++ ++rGGiLaDemGLGKTvq++a +  ++ +ee+++++         tLivvPa+l+ qW++eie+ +++   +v + +g++      +  +p+ll 
  CDO69944.1 185 ERNTPHRGGILADEMGLGKTVQMIATMVINQPDEEDKNRT---------TLIVVPAALMFQWKEEIETKTNGV-FDVHIQHGRE------KIKDPELLG 267
                 677899*******************999888888888876.........*********************999.6788888854......34589**** PP

                 ---EEEE-HHHHHHHT....................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHH..HHHHHH- CS
                 xxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
      SNF2_N 149 dydvvittYdvlsreaelq..............kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledly..gLlkfLr 231
                 ++dv+ittY++l  + +++               +  +l++++  rvvlDE++ ++n  ++ ++av  L++++rw+ltGTPi n l+ l   +L  +  
  CDO69944.1 268 EKDVIITTYQTLVMDFAIPedledsgeemewlrWHGGPLSRMKFYRVVLDEAQFIRNRGTRCSQAVAMLRAKYRWCLTGTPITNTLRYLRvlALWTLPA 366
                 *************999888*************999*************************************************777665225555555 PP

                 TTTT--HHHHHHHTHHHHH...................HHHHHHHHHHHTT-STTEE---GGGT.....--S---EEEEEEEEE--HHHHHHHH..... CS
                 xxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 232 eepfgekqtfdkllqrpie...................aqaekgrsrLlqllqrlmlrrakkdv.....eknlPpkteeiiflklskverksYnrllev 306
                 +e+ +++  f k  +  +                    + a+    r   +l++++ rr+k+         +lPpk +e++++++s++er++Y ++ ++
  CDO69944.1 367 VEVSSSRAHFCKIHELTAYsnnisdwddfnahvakvqlEDARLAGIRAQAILEPIIFRRTKNAKldgepILKLPPKDVELVYVEFSPEEREIYDHMEKK 465
                 66666666665543333335566688889999977755555555556678999*******986657655559**********************33333 PP

                 ...............HHHHHH-HHH-HHHHHHHHHHHHH---XX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 307 lrkkalakllkrseaalkssskskekilelllelrqacnhpqlv 350
                 +  ++    ++r++  lk+     e+++  +l+lrq+c hp lv
  CDO69944.1 466 AQIQINR--FIRNNTLLKNR----EQVFVWMLRLRQICDHPHLV 503
                 3333333..33333333322....579**************986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   8.5e-21   1.5e-17       2     111 .]     807     919 ..     806     919 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 8.5e-21
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnv 97 
                 k+++++e l + e++g+k+++f++ +++l+ ++ l  ++gi+ ++++g ++ + re +l+qf+  g  + +L++ + ++ G+++ ++n Vin+d+ +n+
  CDO69944.1 807 KMLKMIEHLkEWEASGDKTIVFSQWTSMLDLCEQLFARHGIRNLRYDGPMSRDAREYTLAQFRrPGGPKvILVSIKCGGVGLNLVSANRVINLDPAWNY 905
                 5667777777889****************9977777889***********************97566666***************************** PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 ++  q+ +R++R g
  CDO69944.1 906 ATESQAYDRVHRLG 919
                 ************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.5e-08   0.00012       3     169 ..     169     348 ..     105     350 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.5e-08
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH..HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlva..aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakek 99 
                 +l ++Q+  ++ ++++  ++ ++ g+++ + G GKT+ +  + +i +  ++ k++ +l++vp  +l+ q++ee++  ++  ++    + +g++k++  +
  CDO69944.1 169 RLLPHQIIGVKWMVDQERNTPHRGGILADEMGLGKTVQMiaTMVINQPDEEDKNRTTLIVVP-AALMFQWKEEIETKTNGVFD--VHIQHGREKIKDPE 264
                 44555555555555444436677899**********98842344566666666556666666.68**********99999985..45555555555446 PP

                 ....-SEEEEEHHHHHHTH.................HHHTTT-S...............EEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII 100 dstnkkilvttiqsldadseee.........eeeseellrdrfd...............viiiDEaHrlgak.kswreilekfkeavllglTATp 169
                    +k++++tt+q+l  d                         +                ++ DEa  ++   +   +++ +++++++  lT+Tp
  CDO69944.1 265 LLGEKDVIITTYQTLVMDFAIPedledsgeeM-----------EwlrwhggplsrmkfyRVVLDEAQFIRNRgTRCSQAVAMLRAKYRWCLTGTP 348
                 7789***********99883223343333330...........1333334444444444677777754444333555555666666666666666 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.5e-07   0.00062       1     160 [.     173     351 ..     173     358 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.5e-07
   SWI2_SNF2   1 qQyravekavervkegdrkgGviWHtqGSGKsltmvflakkllee.elknpkvvvvtDRkdLdkQlsktfakageek..pkqaesrkeLke.llekese 95 
                 +Q+++v+ +v++ +++ ++gG++    G GK+++m+ ++   + + e kn + ++v+    L  Q ++++++ ++    ++ ++ r+++k+ +l   ++
  CDO69944.1 173 HQIIGVKWMVDQERNTPHRGGILADEMGLGKTVQMIATMVINQPDeEDKNRTTLIVV-PAALMFQWKEEIETKTNGVfdVHIQHGREKIKDpEL-LGEK 269
                 8**********************************9876655554244555555554.589******999987543310223333444443223.3578 PP

   SWI2_SNF2  96 kiifttiqKfe......eeek............eklevlsereniivlvDEaHRsqyg.elakklrkalpnaafigFTGTPilk 160
                 ++i+tt q +       e  +             +   ls+ +   v+ DEa   +   +  ++  ++l+   +  +TGTPi++
  CDO69944.1 270 DVIITTYQTLVmdfaipE--DledsgeemewlrWHGGPLSRMKFYRVVLDEAQFIRNRgTRCSQAVAMLRAKYRWCLTGTPITN 351
                 999999998875555651..13445666666543336788888899******9655441445666788999999********86 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   9.2e-05      0.16      11      64 ..     574     646 ..     564     649 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.2e-05
                 B-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE.....................GGGTEEEEEEE-HHHHH CS
        FYVE  11 kCeiCakkFsllrrrhhCrlCGkvvCekCssklvall.....................ekeaeeksvrvCkeCla 64 
                  C++C   F          +CG+ +C++C + l++++                      ++a++k +r C +C++
  CDO69944.1 574 ACPMCGDFFVE--DNGRILACGDEICKDCLEVLASSPiearqefgnsdeqtnlriekeWEAAASKGLRPCPKCKK 646
                 68888877744..3444468**********8888888777777777777766666665677777888******87 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   5.6e-05       0.1       1      31 [.     575     606 ..     575     621 .. 0.90
   2 ?   -0.9   0.1      0.87   1.6e+03      34      41 .]     637     644 ..     625     644 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
                 -TTT-S--SS-E..E-TTS--B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn.elleCkHsfCskCirkilk 31 
                 Cp C + ++e n ++l C+ ++C++C++ + +
  CDO69944.1 575 CPMCGDFFVEDNgRILACGDEICKDCLEVLAS 606
                 **********999*************987665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.87
                 SSB--TTT CS
    zf-C3HC4  34 kkvkCPlC 41 
                 + ++CP+C
  CDO69944.1 637 GLRPCPKC 644
                 4578**** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.0   0.00027      0.48       2      43 ..     575     645 ..     574     646 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll..............................ekeavCpiCr 43 
                 C+ C + +  e++  +++Cg  +C++Cl  l                               +  + Cp C+
  CDO69944.1 575 CPMCGDFF-VEDNGRILACGDEICKDCLEVLAsspiearqefgnsdeqtnlriekeweaaasKGLRPCPKCK 645
                 99******.*******************99998888777777777777777777777777766677777776 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  11.8   0.00021      0.38     280     359 ..     690     781 ..     687     794 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00021
                  XXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX..XXXXXXX CS
  TFIIF_alpha 280 grEldyisDdsasendpe.............eredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakkl.kkkkkekdkkdSddee 359
                  + E + +sD+s+s++d e             ++  k +  +++k   +++e++ e ee++++++   +k k +ak+  ++kk++  k +S+d+e
   CDO69944.1 690 EPETITLSDSSSSSSDDElpdfatlmrsspkDK-AKSKAQTPAKITLKKKESTSEVEEDESDQDRPRNKGKGNAKGRgRGKKGKF-KVESSDDE 781
                  5689999*********************98444.4477788999999*************9999888887777776514444444.56665554 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9     9e-05      0.16       1      32 [.     575     608 ..     575     613 .. 0.84
   2 ?   -3.8   0.1       8.6   1.5e+04      37      42 .]     639     644 ..     629     644 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9e-05
  zf-C3HC4_4   1 CPiCldYL..ekPvsleCGhsfClsCisslqkep 32 
                 CP+C d++   +   l+CG  +C  C++ l  +p
  CDO69944.1 575 CPMCGDFFveDNGRILACGDEICKDCLEVLASSP 608
                 ********4335679************9988766 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.6
  zf-C3HC4_4  37 llCplC 42 
                  +Cp C
  CDO69944.1 639 RPCPKC 644
                 468888 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00034      0.61       2      35 ..     574     605 ..     573     611 .. 0.77
   2 ?   -1.7   0.1       2.1   3.8e+03      39      44 .]     636     645 ..     626     645 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlr 35 
                  Cp C + +  +d+ ++l Cg  ++++Cle  l+
  CDO69944.1 574 ACPMCGDFF-VEDNGRILACGDEICKDCLEV-LA 605
                 6****7555.567777778*********976.44 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
   zf-RING_2  39 t....CPlCr 44 
                 +    CP C+
  CDO69944.1 636 KglrpCPKCK 645
                 23457***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 6295.26
//
Query:       CDO69945.1  [L=264]
Description: hypothetical protein BN946_scf184836.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-25   90.4   0.3    1.5e-25   89.8   0.3    1.2  1  adh_short       short chain dehydrogenase
    6.7e-20   71.7   0.9    8.4e-20   71.3   0.9    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.7e-07   31.3   0.3    5.9e-07   29.6   0.0    1.9  2  KR              KR domain
    3.4e-07   30.3   3.1    1.2e-06   28.6   0.2    2.2  2  NAD_binding_10  NAD(P)H-binding
    8.5e-05   22.2   0.1    0.00016   21.3   0.1    1.4  1  NmrA            NmrA-like family
    0.00055   20.2   1.7      0.002   18.4   0.1    2.3  2  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.3   5.1e-29   1.5e-25       5     189 ..       6     205 ..       4     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 5.1e-29
                 EESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S.......S--SSGGG CS
   adh_short   5 vtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi.......tgsgpfse 95 
                 v+Gas+GIG+++ ++lak + ++v+ +   +++   ++++ +e a++++iq+Dvtd ++++++ e+       +ld+L++NA+         g+ + ++
  CDO69945.1   6 VIGASRGIGLEYIRQLAKGQDSIVF-AVVRDPASSYLQHVLAEHANVHVIQADVTDPHSLQRAAEQTSILSgSSLDLLIHNAARtdtrlnfRGFDDYKD 103
                 99**************987666655.667788899******9999*********************97777689**********999988855555666 PP

                 CSHHH..HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEE......EGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  96 lseee..wervievNltgvflltravlpamlkqssGrIvnvs......SvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 l+e +  + ++++vN  gv++ ++a+lp + ++   +Iv         S + + +va vaaY+++K a a+ + + a  l ++g  v+++aPG+vdT  
  CDO69945.1 104 LDELDsdFIDSFKVNTLGVVHSIAAFLPLLRRGTDKKIVVLNtegasvSLTLRSRVADVAAYCTTKSAAAMVAAKYAAALGKEGFVVVSMAPGVVDTSS 202
                 65433338899********************999999998752232225555778999**************************************988 PP

                 HHH CS
   adh_short 187 ake 189
                 + +
  CDO69945.1 203 TSA 205
                 765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.9   2.8e-23   8.4e-20       1     190 [.       8     214 ..       8     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 2.8e-23
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EG.....CSS-GGGH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekf.gklDilvnnagiapk.....lkgpflet 90 
                   Ga +gIG +  ++la+   ++v++ +++ a + ++ + +e+ +  v+++DVtd+ ++++++e++      +lD l++na+ +++        ++ ++
    CDO69945.1   8 GASRGIGLEYIRQLAKGQDSIVFAVVRDPASSYLQHVLAEHANVhVIQADVTDPHSLQRAAEQTSILSgSSLDLLIHNAARTDTrlnfrGFDDYKDL 104
                   999***************************8888888887764449*****************99887579************99876655666666 PP

                   -H..HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB......STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2  91 sr..eefdraldvnlyslfllakaalplmkeg..gsivnlssvgaerv......vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   ++  ++f + ++vn+ ++++ + a+lpl+++g   +iv l   ga+++      v++ +ay+++K a   ++   A+ lg++g  v + +pg+++T 
    CDO69945.1 105 DEldSDFIDSFKVNTLGVVHSIAAFLPLLRRGtdKKIVVLNTEGASVSltlrsrVADVAAYCTTKSAAAMVAAKYAAALGKEGFVVVSMAPGVVDTS 201
                   543488999*********************99999999997666655422222366778************************************** PP

                   GGGGSTTHHHHHH CS
  adh_short_C2 178 aasgikgfdelle 190
                   ++s+ + + e  +
    CDO69945.1 202 STSADETAAESFK 214
                   9887665443333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     2e-10   5.9e-07       2      93 ..       3      90 ..       2     102 .. 0.82
   2 ?   -0.6   0.1      0.36   1.1e+03     116     141 ..     173     198 ..     139     237 .. 0.55

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2e-10
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE------ CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlr 93
                +y ++G+  g+Gle +r+la+ g+ ++v+   + +    +++ ++++ a  a+v+v++aDv+d+++++++ e+ +    +++   ih A  ++
  CDO69945.1  3 SYAVIGASRGIGLEYIRQLAK-GQDSIVFAVVRDP----ASSYLQHVLAEHANVHVIQADVTDPHSLQRAAEQTSILSgSSLDLLIHNAARTD 90
                699****************96.6666666555513....344778888899*********************999877789999999887665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.36
                 HHHHHHHTTTS--SEEEEEEEHHHHH CS
          KR 116 awnLhelledesldffvlfSSiagll 141
                 a +  ++ +    + fv++S + g++
  CDO69945.1 173 AMVAAKYAAALGKEGFVVVSMAPGVV 198
                 33333333333333333333333333 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2     4e-10   1.2e-06       1      62 [.       8      72 ..       8      91 .. 0.89
   2 ?    2.2   0.3     0.048   1.4e+02      78     125 ..     171     221 ..     126     226 .. 0.60

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4e-10
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHC...HHHHCTTTCEEEE--TT-CCHHHHHHTT-S CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekl...aeleaeeglevvegdvtdvedlaealkgad 62
                    GA+ ++G + +++l++ ++  v a+vR+p++    + l+++++++v+++dvtd+ +l++a ++++
      CDO69945.1  8 GASRGIGLEYIRQLAKGQDSIVFAVVRDPASSylqHVLAEHANVHVIQADVTDPHSLQRAAEQTS 72
                    9***************99999*******9876443356799*******************99876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.048
                     HHHHHHH..HHHCT--EEEEEEET.TTTSGCGCHHHHHHHHCCHHHHHHHH CS
  NAD_binding_10  78 aknivda..akeagvkRfvlvsai.gvgdevpgefgewnkellkaylaakr 125
                     a+++v+a  a + g + fv+vs + gv d + ++ +e++ e +k+++  ++
      CDO69945.1 171 AAAMVAAkyAAALGKEGFVVVSMApGVVDTSSTSADETAAESFKQVMVRMA 221
                     333332222556677778888864377777777777777777777776555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   5.4e-08   0.00016       2      65 ..       5      71 ..       4      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.4e-08
                EESSTTSHHHHHHHHHHHH.HT-EEEEEES-S-SHHHHHH.HHS.TTEEEES-TT-HHHHHHHHTT- CS
        NmrA  2 lviGaTGrqGksvvrallk.aghkvralvRdtkselaksl.kea.Gvelvkgdlddkeslvealkgv 65
                +viGa+  +G   +r l+k ++  v+a+vRd+ s  ++++ +e   v ++++d+ d  sl++a ++ 
  CDO69945.1  5 AVIGASRGIGLEYIRQLAKgQDSIVFAVVRDPASSYLQHVlAEHaNVHVIQADVTDPHSLQRAAEQT 71
                79*****************99999********888888752554145566*************9986 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.5e-07     0.002       1      58 [.       4      67 ..       4      71 .. 0.83
   2 ?    0.2   0.3      0.29   8.8e+02      63      93 ..     160     190 ..     132     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.5e-07
                EEEES-SH.HHHHHHHHHHHTT..EEEEEEESSHHH..HHHHHHTT..SEEEES-TTSHHHHHHT CS
      TrkA_N  1 iiiiGlGr.vGrslaeeLsegg..kdvvvidkdeer..veelreeg..levvvgdatdeevLeea 58
                +++iG++r +G + +++L +g+  + v ++ +d++   ++++ +e   ++v+++d+td++ L++a
  CDO69945.1  4 YAVIGASRgIGLEYIRQLAKGQdsI-VFAVVRDPASsyLQHVLAEHanVHVIQADVTDPHSLQRA 67
                5799999889**********76644.889999996666888877775788************998 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.29
                 ESEEEE-SSSHHHHHHHHHHHHHHTSSSEEE CS
      TrkA_N  63 adaviaatgddeanilavllakelnpkkkii 93 
                 ad+   +t + +a ++a+++a  l ++  ++
  CDO69945.1 160 ADVAAYCTTKSAAAMVAAKYAAALGKEGFVV 190
                 6667777778899999999998888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1986.70
//
Query:       CDO69946.1  [L=310]
Description: hypothetical protein BN946_scf184836.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2215.15
//
Query:       CDO69947.1  [L=318]
Description: hypothetical protein BN946_scf184836.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-16   60.2   0.0    3.2e-16   59.5   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.4e-11   43.5   0.0    5.2e-11   42.4   0.0    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    7.5e-06   27.0   0.0    1.2e-05   26.4   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.16   11.9   0.1       0.37   10.7   0.1    1.6  1  ADH_N_2       N-terminal domain of oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   7.2e-20   3.2e-16       2      90 ..     180     269 ..     179     291 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 7.2e-20
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET...TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadeviny...keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90 
                 +G++++qlA+ +G+ +i ++ s ++ el+k+lGa++v+++   +e dl ++  ++ g +++dvvf+++ +++tl+a ++++ p G + +v  
  CDO69947.1 180 IGQYVIQLARLSGFSPIITSASLRNTELLKSLGATHVLDRklsSE-DLTKEALKIAG-GPIDVVFDAISAPETLTAGFEATSPTGDFIIVSN 269
                 8***************************************87555.9*********5.5*****************************9976 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.2e-14   5.2e-11       2      65 ..      32      94 ..      31     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.2e-14
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepli 65
                +e+l++++aag++  D +++k    l  k+p+ilG +++G+v+evg++v++++vGdrV+ + ++
  CDO69947.1 32 KELLVRIEAAGLNPGDWKVWKL-GILVEKYPVILGFDAAGVVVEVGSDVNDYAVGDRVMFQGWV 94
                799******************9.7***********************************98776 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.7e-09   1.2e-05       1     104 [.     211     317 ..     211     318 .] 0.74

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.7e-09
                   TT-SEEEETT..STTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr..tedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   lGA++v+d +  +ed++    ++ g+ +Dvv+d++  +++l+a +++ ++ G+++ ++++p++ a   p kk   ++  ++  f + as    +l++
    CDO69947.1 211 LGATHVLDRKlsSEDLTkeaLKIAGGPIDVVFDAISAPETLTAGFEATSPTGDFIIVSNRPIPGASEHPDKKVHFARGLFNAPFNAAAS-LS-LLAK 305
                   8******88876788889885556889*********88888*******777****9997775555555555444444444444433344.44.5999 PP

                   HHHHHHHHH--- CS
  ADH_zinc_N_2  93 laalieeGklrp 104
                   l +l+e+G +++
    CDO69947.1 306 LPELLESGDIKV 317
                   ********9997 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.2e-05      0.37      18     101 ..      19     100 ..      14     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
     ADH_N_2  18 feleeeelpelkdGevlvralylSvDPym.RgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyavsd 101
                 ++l+e ++p++++ e+lvr++  ++ P   +++         pv lg   +g +v   v S  +d++vGd V+ + gw d a+ d
  CDO69947.1  19 LQLKEIDVPKPAAKELLVRIEAAGLNPGDwKVWKLGILVEKYPVILGFDAAGVVV--EVGSDVNDYAVGDRVM-FQGWVDFATFD 100
                 589************************9625666555555668888866544433..4679999*******97.56888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2115.89
//
Query:       CDO69948.1  [L=352]
Description: hypothetical protein BN946_scf184836.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-16   58.5   0.1    1.4e-15   57.4   0.0    1.6  2  ADH_zinc_N    Zinc-binding dehydrogenase
    6.1e-11   42.2   0.1    7.2e-10   38.7   0.0    2.1  2  ADH_N         Alcohol dehydrogenase GroES-like domain
      6e-08   33.8   0.0    1.2e-07   32.9   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0045   16.5   0.0     0.0073   15.8   0.0    1.3  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.8     8e+03      82      94 ..      65      78 ..      59      91 .. 0.71
   2 !   57.4   0.0   3.2e-19   1.4e-15       2      88 ..     176     263 ..     175     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
                EEEEEECSC.TSSE CS
  ADH_zinc_N 82 gGrlvvvGg.gkge 94
                 G +v vGg +k++
  CDO69948.1 65 AGVVVEVGGeVKNH 78
                68888888765544 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 3.2e-19
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET...TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadeviny...keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvv 88 
                 +G++++qlA+ +G+  i++  s++++el+k+lGa++v+++    + +lv++ + +  g+++d+v+++v++++tl a +++++ +G + +v
  CDO69948.1 176 IGQYVIQLARLSGFSSIVTTASPKNAELLKSLGATHVLDRklpAD-ELVQEAWHAA-GGPFDLVYDAVANEETLAAGYRATAGKGDFIYV 263
                 8***************************************65422.5777777777.45**************************98775 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.6e-13   7.2e-10       2      66 ..      28      91 ..      27      97 .. 0.94
   2 ?    2.3   0.0     0.034   1.5e+02      87     109 .]      93     115 ..      86     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.6e-13
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis 66
                +evli+v+a+++   D +++     l +++p ilG +++G+v+evg evk+ ++GdrV++e  i+
  CDO69948.1 28 DEVLIRVEATALSPGDWKMYAL-GILIQSYPTILGFDVAGVVVEVGGEVKNHAKGDRVLCESYIN 91
                89*******************9.6***********************************998775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.034
                 TTTSS-SSSBSEEEECGGGEEEE CS
       ADH_N  87 lgvsldGgfaeyvvvpekklvkl 109
                 ++ + +G+f++y+ vp+++++k+
  CDO69948.1  93 MTGESRGAFQQYIAVPSEYVAKI 115
                 344489***********999875 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.6e-11   1.2e-07       1     111 [.     207     320 ..     207     337 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.6e-11
                   TT-SEEEETTSTTHH......HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe......aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadi 89 
                   lGA++v+d + ++ e       a  g+ +D+v+d+v++e++l+a  ++ +g+G+++ +++ p++ a    +k+   +    + l ++ +s  a +++
    CDO69948.1 207 LGATHVLDRKLPADElvqeawHA-AGGPFDLVYDAVANEETLAAGYRATAGKGDFIYVLQNPIPGAEESSEKRLHFA----HGLYTIPTSqeASKQM 298
                   8******9984444446887544.4788*********99999**************999654444333333323222....2222222224557888 PP

                   HHHHHHHHHHHH----EEEEEE CS
  ADH_zinc_N_2  90 leelaalieeGklrpvvdrvfp 111
                   l++l +l+e G ++p   +v p
    CDO69948.1 299 LAKLPELLERGDIKPNRPEVIP 320
                   ***************8877765 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06    0.0073      26     125 ..     159     258 ..     150     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
  Glu_dehyd_C  26 afewepesalvlG.aGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeip.....easeemdlvvEaTGsakhafea 117
                  + +++ + al+lG a s+G   + l ++  +g++ + +++      ++++l+++lGat v  r+ p de+      +a  ++dlv++a  + + + + 
   CDO69948.1 159 RGKYKGKAALILGgASSIGQYVIQLARL--SGFSSIVTTA---S-PKNAELLKSLGATHVLDRKLPADELVqeawhAAGGPFDLVYDAVANEETLAAG 250
                  56788899***963789**988555554..7999664443...3.34689***************9998751111145689*******9999999998 PP

  Glu_dehyd_C 118 iealapnG 125
                   +a a +G
   CDO69948.1 251 YRATAGKG 258
                  88888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1932.84
//
Query:       CDO69949.1  [L=386]
Description: hypothetical protein BN946_scf184836.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-15   55.8   0.0    7.1e-15   55.1   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.6e-09   36.9   0.0    5.4e-09   35.9   0.0    1.5  2  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.4e-06   29.4   0.0    2.5e-06   28.6   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.11   12.4   0.3       0.77    9.7   0.3    2.0  1  ADH_N_2       N-terminal domain of oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.6e-18   7.1e-15       2      88 ..     181     268 ..     180     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.6e-18
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET...TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadeviny...keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvv 88 
                 +G++++qlA+ +G+ +i +  s +++el+++lGa++v+++   ++ ++v++ +++ g +++d+vf+++ s +tl + ++++ p G + +v
  CDO69949.1 181 IGQYVIQLARLSGFSPIIATASLHNAELLESLGATHVLDRtlpSD-SVVKEAWDIAG-GPIDLVFDTISSAETLATGYRATSPEGDFIYV 268
                 8*************88888888889***************87766.7*********5.5**************************99765 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.2e-12   5.4e-09       2      64 ..      33      94 ..      32     101 .. 0.93
   2 ?   -2.6   0.0       1.1   4.8e+03      91     108 ..     102     119 ..      92     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.2e-12
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepl 64
                +e l++v+aa+++  D +il     +  k+p +lG + +G+v++vg+ev++++vGdrV+ ++ 
  CDO69949.1 33 DEFLVRVEAAALNPVDWKILYL-GIPLDKFPSVLGFDGAGVVVKVGSEVNDYAVGDRVLFQAG 94
                789**************99998.6**********************************99875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                 S-SSSBSEEEECGGGEEE CS
       ADH_N  91 ldGgfaeyvvvpekklvk 108
                 l+G+f++y++++++ + k
  CDO69949.1 102 LRGTFQSYTIANSARATK 119
                 789*****9999776655 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.7e-10   2.5e-06       1     107 [.     212     321 ..     212     341 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 5.7e-10
                   TT-SEEEETT.STTHH.....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe.....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadile 91 
                   lGA++v+d +   d +     + + g+ +D+v+dt+ ++++l+   ++ +++G+++ ++ +p++ a+ kp+k++   +  +   f  ++++ + +l+
    CDO69949.1 212 LGATHVLDRTlPSDSVvkeawD-IAGGPIDLVFDTISSAETLATGYRATSPEGDFIYVLPDPIPGADEKPQKRAHFVRGFFDVPF--NRDVSKSLLA 305
                   8******999977777799844.45889*********888889999999777******977788888888775544444444444..23358888** PP

                   HHHHHHHHHH----EE CS
  ADH_zinc_N_2  92 elaalieeGklrpvvd 107
                    l + +e+G+l+p   
    CDO69949.1 306 NLPEIFESGQLKPNRV 321
                   ************9765 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00017      0.77      18      94 ..      20      95 ..       9     105 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00017
     ADH_N_2 18 feleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgw 94
                ++l+++++pe++++e+lvr++  ++ P     +      ++ ++      g++v   v S+ +d++vGd V+ ++g+
  CDO69949.1 20 LQLKQVDVPEPGKDEFLVRVEAAALNPVDWKILYLGIP-LDKFPSVLGFDGAGVVVKVGSEVNDYAVGDRVLFQAGF 95
                689******************99999986555433322.33333333355666666667777888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56
# Mc/sec: 2067.87
//
Query:       CDO69950.1  [L=733]
Description: hypothetical protein BN946_scf184836.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.3e-138  462.9   5.7   1.6e-138  462.5   5.7    1.0  1  Adaptin_N    Adaptin N terminal region
    3.3e-60  202.8   5.4    2.7e-59  199.8   0.7    2.8  2  Cnd1         non-SMC mitotic condensation complex subunit 1
      2e-16   60.1   6.3    3.9e-08   33.6   0.1    6.4  6  HEAT_2       HEAT repeats
      2e-06   27.6  16.7    0.00025   21.0   0.1    6.3  8  HEAT         HEAT repeat
    2.8e-05   24.0   5.1      0.092   12.8   0.0    5.6  5  Arm          Armadillo/beta-catenin-like repeat
    0.00036   20.2   0.1       0.16   11.5   0.0    3.2  3  CLASP_N      CLASP N terminal
    0.00044   20.7   9.4       0.33   11.5   0.1    6.5  8  HEAT_EZ      HEAT-like repeat
    0.00059   20.0   0.9       0.35   11.1   0.0    3.9  3  RTP1_C1      Required for nuclear transport of RNA pol II C-t
  ------ inclusion threshold ------
      0.026   14.3   1.3       0.39   10.5   0.1    3.1  3  TIP120       TATA-binding protein interacting (TIP20)
      0.086   13.3   0.1        0.8   10.2   0.1    2.7  2  GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.5   5.7  9.1e-142  1.6e-138       3     522 ..      10     532 ..       9     534 .. 0.95

  Alignments for each domain:
  == domain 1  score: 462.5 bits;  conditional E-value: 9.1e-142
                 HHCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHH CS
   Adaptin_N   3 kriqqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALr 101
                 k ++ ela+ lns   ++ k+k+a+k++i+ ++ G+  + lf++v+k+++++d+e+K+lvYlyl+++a+++++l++L++n++ kD  dpn+l+r+lA+r
  CDO69950.1  10 KGENFELAADLNSE--YKDKRKDAIKRVIANMTVGK-GDGLFPDVLKNMQTEDLEQKKLVYLYLMNYAKTQPELVILAVNTFVKDTDDPNPLVRALAIR 105
                 567789********..*******************8.489*********************************************************** PP

                 HHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH......HCCCCCCC...... CS
   Adaptin_N 102 vLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei......kkndrlll...... 187
                 +++++r +++ ++l++ ++k+lkd++pyvrk+Aal+++kly+++p+l+ ++ +++++ + ++d++p+vv+++va+l  i                    
  CDO69950.1 106 TMGCLRAEKIIDYLCDPLQKCLKDDNPYVRKTAALCVAKLYDLKPELVIENgFLDQLRDMIADSNPMVVANTVAALSDIhvaavaA------Gvpkdef 198
                 *******************************************************************************6666652......0333334 PP

                 HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCC.HCCCCST......HHHCCHHCHHHHHHSS CS
   Adaptin_N 188 kllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnliv.elapkne......livlavnaLvrllssk 279
                  +  ++v++L  +l+e+++w+ v i++ l+r+ +++  e+  + ++e++ +++q++n++V+l++v++++ ++   n+      li +++  Lv+lls++
  CDO69950.1 199 AITTDIVNKLLVALNECSEWGRVAILNALSRYEAEDSGES--EHICERVVPQFQHANASVVLSAVKVVMiHMRGINSenvqrtLIRKMAPPLVTLLSNP 295
                 89999999999999**************************..56**********************99985555555566789**************** PP

                 CCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHH CS
   Adaptin_N 280 denlryvaLrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewv 378
                 +e ++ vaLr+++ +++k+ + + ++++++f++k++d+ +++ ++ld++++l++e+Nv+ +++eLk+y++ev d df+++ +kaIg+ a+k+ + ae++
  CDO69950.1 296 PE-VQWVALRNINLLLQKR-PDILSNEMRVFFCKYNDPLYVKVEKLDIMVRLATEKNVDPLLSELKEYAQEV-DVDFVRRSIKAIGQTAVKIDEAAERC 391
                 **.****************.9999*********************************************999.************************** PP

                 HHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHH CS
   Adaptin_N 379 ldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvlesekvklqilta 477
                 ++vll+l+ ++ ++v++e+v+v++d+++k+p+  e +i +L++ l++++++ea+a++iW++Gey++++ n   a +ll  +   f++es +v+lq lta
  CDO69950.1 392 VNVLLDLIASRVSYVVQEAVVVMKDIFRKYPATYEGVIPTLCANLDELDEPEAKASLIWIIGEYAKKIDN---ADELLGIFVDTFTEESYQVQLQTLTA 487
                 **********************************************************************...************************** PP

                 HHHHHHCXGCC.THXHHHHHHHHHHH..XXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 478 lvKlyltspdketqekliqlvlslat..ssdlevrdRaveylqllss 522
                  vKlyl++p+ ++ + l+q vl+ at   ++ +vrdRa++y++lls+
  CDO69950.1 488 VVKLYLQKPE-SS-QALVQKVLNTATkdCDSPDVRDRAYIYWRLLST 532
                 *********5.34.4778888887777988**************987 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.8   0.7   1.5e-62   2.7e-59       1     161 [.      98     265 ..      98     266 .. 0.96
   2 ?    4.4   0.4      0.02        35      12     142 ..     381     507 ..     341     526 .. 0.55

  Alignments for each domain:
  == domain 1  score: 199.8 bits;  conditional E-value: 1.5e-62
        Cnd1   1 liRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.....sena 92 
                 l+Ralairt+gc+r +++++yl++pL+k+LkD++pyVRktaa++vakL  +++++v+e+gfl++l++++ D+np+Vvan++aal++i+        ++ 
  CDO69950.1  98 LVRALAIRTMGCLRAEKIIDYLCDPLQKCLKDDNPYVRKTAALCVAKLydLKPELVIENGFLDQLRDMIADSNPMVVANTVAALSDIHVAavaagVPKD 196
                 79**************************************************************************************99654333388 PP

        Cnd1  93 iynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviL 161
                  + ++ di++kl+ alnecsewg++ il++L++y ++d+ e e+++e+++p++qhan +vvl+a+kv++
  CDO69950.1 197 EFAITTDIVNKLLVALNECSEWGRVAILNALSRYEAEDSGESEHICERVVPQFQHANASVVLSAVKVVM 265
                 89*****************************************************************98 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.02
        Cnd1  12 cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleD.enprVvanalaalteisek.senaiynllpdiisklsdal 108
                 ++++++  e  v+ L   +  + +yV + a++v+  ++++     +g++ +l   l++ ++p+  a+ + ++ e+++k +      +  +++  ++d  
  CDO69950.1 381 AVKIDEAAERCVNVLLDLIASRVSYVVQEAVVVMKDIFRKYPATYEGVIPTLCANLDElDEPEAKASLIWIIGEYAKKiD------NADELLGIFVDTF 473
                 55555555555555555555555555555555555555555555555555555555331335555555555555555521......2222222222222 PP

        Cnd1 109 necsewgqitilefLlsyipkdkqeaeslveklc 142
                 +e s + q + l+++++   ++ +  + lv+k+ 
  CDO69950.1 474 TEESYQVQLQTLTAVVKLYLQKPESSQALVQKVL 507
                 2334444555555555543333343566666665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   2.2e-11   3.9e-08       8      87 ..      92     181 ..      85     182 .. 0.76
   2 !    6.9   0.1    0.0045       8.1      33      61 ..     159     187 ..     149     195 .. 0.87
   3 ?    2.1   0.0      0.14   2.5e+02       2      56 ..     206     265 ..     205     287 .. 0.71
   4 !    5.9   0.2    0.0094        17       4      51 ..     358     410 ..     285     415 .. 0.56
   5 !   11.7   0.1   0.00014      0.25       4      84 ..     358     449 ..     351     453 .. 0.74
   6 !   11.9   0.0   0.00013      0.23       2      83 ..     430     523 ..     429     528 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 2.2e-11
      HEAT_2   8 lendpdpevrraairaLgrignpea....lpaLvellededpavRraaaeaLgaig........dpealpaLkellddddddvvReaAaeaL 87 
                   +dp+p vr+ air++g ++ +++     + L ++l+d++p+vR++aa   +++         ++ +l+ L+++ +d  ++ v + ++ aL
  CDO69950.1  92 T-DDPNPLVRALAIRTMGCLRAEKIidylCDPLQKCLKDDNPYVRKTAALCVAKLYdlkpelviENGFLDQLRDMIADS-NPMVVANTVAAL 181
                 5.8***************77777664555999999******************997343444444779******88765.555555566666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0045
      HEAT_2  33 lpaLvellededpavRraaaeaLgaigdp 61 
                 l+ L++++ d++p+v ++ + aL+ i   
  CDO69950.1 159 LDQLRDMIADSNPMVVANTVAALSDIHVA 187
                 68899******************998754 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
      HEAT_2   2 daLlqalendpdpevrraairaLgrignpea......lpaLvellededpavRraaaeaLg 56 
                 ++Ll al n  ++  r a++ aL r+  +++       + +v+  +++++ v   a++   
  CDO69950.1 206 NKLLVAL-NECSEWGRVAILNALSRYEAEDSgesehiCERVVPQFQHANASVVLSAVKVVM 265
                 6788888.788888999*******8876643343344888888889999999999998765 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0094
      HEAT_2   4 LlqalendpdpevrraairaLg....rignp....ealpaLvellededpavRraa 51 
                 L +++ +  d +  r+ i+a+g    +i  +    ++++ L++l+ +  ++v ++a
  CDO69950.1 358 LKEYA-QEVDVDFVRRSIKAIGqtavKI--DeaaeRCVNVLLDLIASRVSYVVQEA 410
                 22222.2333333444444444222211..01122444444444444444444444 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00014
      HEAT_2   4 LlqalendpdpevrraairaLg....rignp....ealpaLvellededpavRraaaeaLgai.....gd.pealpaLkellddddddvvReaAa 84 
                 L +++ +  d +  r+ i+a+g    +i  +    ++++ L++l+ +  ++v ++a+  +  i     ++ + ++p L++ ld+ d+++ +++ +
  CDO69950.1 358 LKEYA-QEVDVDFVRRSIKAIGqtavKI--DeaaeRCVNVLLDLIASRVSYVVQEAVVVMKDIfrkypATyEGVIPTLCANLDELDEPEAKASLI 449
                 44555.47777888999*****555433..1334488***********************9776544322488*********9988888777655 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 0.00013
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgaig..dpe.....alpaLkellddddddvvReaA 83 
                 ++L++ l +  +pe ++  i+ +g+++ +     e+l ++v+  + e+  v+ +  +a +++    pe     + ++L  + +d d+++vR +A
  CDO69950.1 430 PTLCANLDELDEPEAKASLIWIIGEYAKKidnadELLGIFVDTFTEESYQVQLQTLTAVVKLYlqKPEssqalVQKVLNTATKDCDSPDVRDRA 523
                 7888999888999***********55544444469*************************9952223323333457777777888888888887 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0034       6.1       4      25 ..      87     108 ..      84     110 .. 0.81
   2 !   21.0   0.1   1.4e-07   0.00025       2      28 ..     120     146 ..     119     148 .. 0.90
   3 !    6.7   0.1    0.0058        10       2      27 ..     159     184 ..     158     185 .. 0.91
   4 ?   -2.6   0.1       5.5   9.8e+03       1      25 [.     204     228 ..     204     229 .. 0.79
   5 ?   -3.4   0.0        10   1.8e+04       9      22 ..     249     262 ..     244     264 .. 0.75
   6 ?   -1.2   0.0         2   3.6e+03       1      29 [.     428     457 ..     428     459 .. 0.77
   7 ?   -1.8   0.0         3   5.4e+03      10      20 ..     512     523 ..     503     525 .. 0.75
   8 ?   -2.9   0.2       6.7   1.2e+04      17      28 ..     601     612 ..     601     614 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
                 HHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLg 25 
                 +++k   Dp+p VR+ A++++g
  CDO69950.1  87 TFVKDTDDPNPLVRALAIRTMG 108
                 5666668************998 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                  ++l+k+l+D++p VR++Aa+++++l+
  CDO69950.1 120 CDPLQKCLKDDNPYVRKTAALCVAKLY 146
                 5789*******************9986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0058
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 l+ l  ++ D++p V ++++ aL ++
  CDO69950.1 159 LDQLRDMIADSNPMVVANTVAALSDI 184
                 788999*****************987 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 5.5
                 HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLg 25 
                 +++ ll +l+ +s   R a ++aL 
  CDO69950.1 204 IVNKLLVALNECSEWGRVAILNALS 228
                 5677888899999888999999886 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 10
                 HT-SSHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAak 22 
                  ++ +++V  +A+k
  CDO69950.1 249 FQHANASVVLSAVK 262
                 57888999999887 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 2
                 HHHHHHHHHT-.SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLgalae 29 
                 ++P+l+ +l   ++pe  ++ ++ +g+ a+
  CDO69950.1 428 VIPTLCANLDElDEPEAKASLIWIIGEYAK 457
                 589999999547888888888888887776 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 3
                 T-.SSHHHHHHH CS
        HEAT  10 sD.pspeVReaA 20 
                 +D +sp+VR+ A
  CDO69950.1 512 KDcDSPDVRDRA 523
                 5657899**987 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 6.7
                 HHHHHHHHHHHH CS
        HEAT  17 ReaAakaLgala 28 
                 R aA kaL ++a
  CDO69950.1 601 RLAAQKALQTVA 612
                 899*9**99887 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   1.9e+02       9      36 ..     116     142 ..     112     145 .. 0.82
   2 !   12.8   0.0   5.2e-05     0.092       6      37 ..     151     182 ..     148     184 .. 0.94
   3 ?    2.2   0.0      0.11     2e+02      14      25 ..     285     296 ..     274     299 .. 0.74
   4 ?    2.6   0.1     0.088   1.6e+02      13      34 ..     391     412 ..     387     415 .. 0.90
   5 ?    0.1   0.0      0.53   9.5e+02      12      25 ..     427     440 ..     426     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                 HHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   9 ieaGavppLvrLLssedeevqeeAawAL 36 
                 i++   +pL ++L+++++ v++ Aa ++
  CDO69950.1 116 IDY-LCDPLQKCLKDDNPYVRKTAALCV 142
                 566.6788889*************9776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.2e-05
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALs 37 
                 ++vie G +++L +++ + +++v+ + ++ALs
  CDO69950.1 151 ELVIENGFLDQLRDMIADSNPMVVANTVAALS 182
                 689****************************8 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
                 HHHHHHHTTTSS CS
         Arm  14 vppLvrLLssed 25 
                  ppLv+LLs++ 
  CDO69950.1 285 APPLVTLLSNPP 296
                 59*******875 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.088
                 HHHHHHHHTTTSSHHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAaw 34 
                 +v +L++L+ s    v++eA+ 
  CDO69950.1 391 CVNVLLDLIASRVSYVVQEAVV 412
                 899****************985 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.53
                 THHHHHHHHTTTSS CS
         Arm  12 GavppLvrLLssed 25 
                 G++p L++ L+  d
  CDO69950.1 427 GVIPTLCANLDELD 440
                 9*******998766 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   8.9e-05      0.16     171     209 ..     113     151 ..      79     173 .. 0.90
   2 !    4.9   0.0    0.0093        17      86     128 ..     382     424 ..     368     439 .. 0.86
   3 ?   -1.9   0.0       1.1     2e+03     176     214 ..     502     540 ..     465     546 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.9e-05
     CLASP_N 171 sllldliekslkkgleDanptVRetaRstfweffkvwPs 209
                 ++++d + + l+k+l+D np VR+ta  ++ ++++  P+
  CDO69950.1 113 EKIIDYLCDPLQKCLKDDNPYVRKTAALCVAKLYDLKPE 151
                 55667777889***********************99886 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0093
     CLASP_N  86 eqldpmveillptLlkllgdtKkiisqnanqalaallsnasfs 128
                  ++d+ +e+ +++Ll+l+++    + q+a +++++++++ + +
  CDO69950.1 382 VKIDEAAERCVNVLLDLIASRVSYVVQEAVVVMKDIFRKYPAT 424
                 4699*********************************998854 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
     CLASP_N 176 liekslkkgleDan.ptVRetaRstfweffkvwPsrAksl 214
                 l++k+l  + +D + p VR+ a   +w++ ++ P  Ak++
  CDO69950.1 502 LVQKVLNTATKDCDsPDVRDRA-YIYWRLLSTDPGAAKAV 540
                 4677777777777636788887.57888888888888765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.065   1.2e+02      38      54 ..      93     109 ..      76     110 .. 0.84
   2 !   11.5   0.1   0.00018      0.33       3      54 ..      99     144 ..      97     145 .. 0.73
   3 ?    3.3   0.0      0.07   1.3e+02      30      53 ..     159     182 ..     155     184 .. 0.89
   4 ?   -0.1   0.0      0.81   1.5e+03       4      34 ..     220     250 ..     220     260 .. 0.86
   5 ?    3.4   0.1     0.065   1.2e+02      18      45 ..     272     299 ..     247     304 .. 0.65
   6 ?   -2.5   0.0       4.5     8e+03      29      53 ..     428     453 ..     426     455 .. 0.75
   7 ?   -3.3   0.1       8.1   1.4e+04      33      48 ..     506     523 ..     499     523 .. 0.54
   8 ?   -3.0   0.0       6.3   1.1e+04       7      29 ..     684     712 ..     682     714 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.065
     HEAT_EZ  38 nddsdeVRaaAagaLgn 54 
                  d++++VRa A+++ g 
  CDO69950.1  93 DDPNPLVRALAIRTMGC 109
                 58899*******99875 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00018
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 vR+ A++++G+l        ++ ++ + ++L ++L+dd++ VR++Aa + ++
  CDO69950.1  99 VRALAIRTMGCLR------AEKIIDYLCDPLQKCLKDDNPYVRKTAALCVAK 144
                 6777777777644......4555556667888**************988665 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.07
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAagaLg 53 
                 l++L  +  d++++V a+++ aL+
  CDO69950.1 159 LDQLRDMIADSNPMVVANTVAALS 182
                 78999999***************8 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.81
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLl 34 
                 R a ++aL+r +++ +   +   ++++p++ 
  CDO69950.1 220 RVAILNALSRYEAEDSGESEHICERVVPQFQ 250
                 778899**99888898888889999999886 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.065
     HEAT_EZ  18 epel.lqplvpeilpaLlalLnddsd.eVR 45 
                 ++e  +++l+ ++ p+L+ lL+  ++ eV+
  CDO69950.1 272 NSENvQRTLIRKMAPPLVTLLS--NPpEVQ 299
                 4444367799999999998884..444775 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 4.5
     HEAT_EZ  29 ilpaLlalLnd.dsdeVRaaAagaLg 53 
                 ++p L+a L   d++e +a  ++ +g
  CDO69950.1 428 VIPTLCANLDElDEPEAKASLIWIIG 453
                 78999999955588888888888877 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 8.1
     HEAT_EZ  33 LlalLnddsd..eVRaaA 48 
                  l++ + d+d  +VR  A
  CDO69950.1 506 VLNTATKDCDspDVRDRA 523
                 455553333335889765 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 6.3
     HEAT_EZ   7 AawaLGr........laggepellqplvpei 29 
                 A+++LG         +a   p  lqp+ p++
  CDO69950.1 684 ALAGLGVggfgfgasPA--TPSVLQPATPVV 712
                 55666544433333344..666677777655 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0002      0.35       4      77 ..      88     155 ..      85     170 .. 0.91
   2 ?   -1.2   0.0       1.2   2.2e+03      26      81 ..     226     282 ..     216     307 .. 0.76
   3 ?    4.0   0.3      0.03        54      36      86 ..     386     439 ..     355     523 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlk 77 
                  +kd  dp + vra +++++  l  +k       i+ + + l+++Lkd+++Yv   a  ++++L d  pe v++
  CDO69950.1  88 FVKDTDDPNPLVRALAIRTMGCLRAEKI------IDYLCDPLQKCLKDDNPYVRKTAALCVAKLYDLKPELVIE 155
                 678999**************99988886......9**********************************99986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
     RTP1_C1  26 liekkskeavldiekilkllleaLkdedsYvYLnaikgLv.aLadvfpeevlklLle 81 
                  +++ ++e+  + e+i + ++ + ++ +  v L+a+k++  ++  + +e+v ++L++
  CDO69950.1 226 ALSRYEAEDSGESEHICERVVPQFQHANASVVLSAVKVVMiHMRGINSENVQRTLIR 282
                 455555677888889999999999999999999999976515555666666666665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.03
     RTP1_C1  36 ldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee...vlklLleeyeee 86 
                 + +e+ +++ll+ ++   sYv  +a+ ++  +  ++p++   v+++L+++  e 
  CDO69950.1 386 EAAERCVNVLLDLIASRVSYVVQEAVVVMKDIFRKYPATyegVIPTLCANLDEL 439
                 567888999999999999999999999999999999865444889999887333 PP

>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00022      0.39      63     107 ..     116     163 ..     101     209 .. 0.85
   2 ?   -1.2   0.0      0.84   1.5e+03      63     120 ..     281     338 ..     268     392 .. 0.74
   3 ?    0.3   0.0      0.28     5e+02      66     112 ..     465     512 ..     447     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
      TIP120  63 lselldrvlaGlsDe.hdikllcnlmlsklvalapeevler..ldelv 107
                 +  l+d + + l+D+   ++ ++ l+++kl +l+pe v+e+  ld+l 
  CDO69950.1 116 IDYLCDPLQKCLKDDnPYVRKTAALCVAKLYDLKPELVIENgfLDQLR 163
                 44566779******999********************99988866654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.84
      TIP120  63 lselldrvlaGlsDehdikllcnlmlsklvalapeevlerldelvealrktlskklke 120
                 + +++  +++ ls   +++ +++ ++  l++ +p+ +++++  +  +++  l  k+++
  CDO69950.1 281 IRKMAPPLVTLLSNPPEVQWVALRNINLLLQKRPDILSNEMRVFFCKYNDPLYVKVEK 338
                 5555666666677777888888888888888888888888887777777777666654 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
      TIP120  66 lldrvlaGlsDe.hdikllcnlmlsklvalapeevlerldelvealrk 112
                 ll   ++ ++ e ++++l +++ ++kl   +pe+ ++ ++++ ++ +k
  CDO69950.1 465 LLGIFVDTFTEEsYQVQLQTLTAVVKLYLQKPESSQALVQKVLNTATK 512
                 5555566666666999***************99999999888887766 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00045       0.8      18      76 ..     347     402 ..     336     419 .. 0.82
   2 ?   -2.6   0.0       4.5     8e+03      62      75 ..     499     512 ..     496     520 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00045
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S..--------TTHHHHHHHHHHHHHHHH CS
  GlutR_dimer  18 kslevvptIkalrekaeeireeeleralkklaldgedreelekltrslvnkllheptar 76 
                   +++v+p++++l+e+a+e+  + ++r +k ++   +++ ++++ +++ vn ll    +r
   CDO69950.1 347 TEKNVDPLLSELKEYAQEVDVDFVRRSIKAIG---QTAVKIDEAAERCVNVLLDLIASR 402
                  5789**************************97...777779999999999999776665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.5
                  HHHHHHHHHHHHHH CS
  GlutR_dimer  62 trslvnkllhepta 75 
                  +++lv+k+l++ t+
   CDO69950.1 499 SQALVQKVLNTATK 512
                  68999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.40s 00:00:01.24 Elapsed: 00:00:00.58
# Mc/sec: 3836.80
//
Query:       CDO69951.1  [L=515]
Description: hypothetical protein BN946_scf184836.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-10   39.7   0.0    1.6e-09   38.6   0.0    1.6  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   8.7e-14   1.6e-09       2      96 .]     149     247 ..     148     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 8.7e-14
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE......................---TT-E...........EEEE-.. CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk............eavkikpkkgrl...........vlFesde 73 
                     ++++yg+++++kpHvD+     + +++  +++l +  ++s+eGG+l+l+e+              +          l           v+F+sd 
      CDO69951.1 149 KLNVYGPQSFFKPHVDTP----RGETMFGSLVLVF--PTSYEGGALVLRERGCnpapkewsvdsaS----------LlsqtsspsiayVAFFSDV 227
                     789*************84....44889********..589********666557766555544330..........1344444455559999976 PP

                     B-TEEE--B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  74 llpHevlpvtkggeRlsltgwir 96 
                        Hevlpv++g  R+++t++++
      CDO69951.1 228 E--HEVLPVESG-YRVTITYNLH 247
                     6..******775.******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 2817.63
//
Query:       CDO69952.1  [L=1367]
Description: hypothetical protein BN946_scf184836.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-181  604.0   0.0   1.7e-181  603.6   0.0    1.2  1  RNA_pol   DNA-dependent RNA polymerase
      2e-97  326.6   0.4      2e-97  326.6   0.4    2.0  2  RPOL_N    DNA-directed RNA polymerase N-terminal
    0.00014   22.0   0.2    0.00034   20.8   0.2    1.7  1  PPR_2     PPR repeat family


Domain annotation for each model (and alignments):
>> RNA_pol  DNA-dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  603.6   0.0  2.8e-185  1.7e-181       1     414 []     811    1367 .]     811    1367 .] 0.97

  Alignments for each domain:
  == domain 1  score: 603.6 bits;  conditional E-value: 2.8e-185
                  EE-HHHHHHHHHHHHHHHTT-TSSTHHHHHHHHHHTHHHHHHHHHTTT...TGGGGSSSHHHHHHHHHHHHHHHH..HGTTSEE-S-EEEEBSTHHH CS
     RNA_pol    1 kpLgeeglrwLkihlanlfGldkaslkervefveenleeildsaenplegkrwwlkaedpwqaLaacfelkkalesedpeeyvshlpvhqDGscnGL 97  
                  kpLg++glrwLkihlanl+G+dkas++erv+fv+++le+i+dsae+pleg+rww+ka+dpwq+Laac+el++ales+dpe+y++ lpvhqDG+cnGL
  CDO69952.1  811 KPLGARGLRWLKIHLANLVGYDKASFDERVQFVHDHLEDIYDSAEHPLEGRRWWTKADDPWQCLAACIELRAALESPDPEAYECALPVHQDGTCNGL 907 
                  89*********************************************************************************************** PP

                  HHHHHHTT-HHHHHHTTSSSSSS---HHHHHHHHHHHHHHHHE.ESTHH...HHHHHT.--HHHHHHHHHHGGGT-THHHHHHHHHHHTHHH..... CS
     RNA_pol   98 QHYaaLgrDeegakqVNLvpsdrpqDvYsavaelvkekvekdaekgeel...akllkgkikRkvvKqtvmtnvYgvtfvgareqiekqlkeleevee 191 
                  QHYaaLg+D++ga+qVNL  +drp+DvY++va++v+e++++d ++g+++   akll+gki+RkvvKqtvmt+vYgvtf+gar+qie+ql+++ +v+ 
  CDO69952.1  908 QHYAALGGDAVGAAQVNLAAADRPSDVYTYVAQMVEESIKEDLKRGDQApvfAKLLSGKISRKVVKQTVMTTVYGVTFIGARDQIERQLRDRGDVPP 1004
                  ******************************************9887743335********************************************* PP

                  TTHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS-EB-T.........................-.S--EEEEETTSEEEEE--EEESEE CS
     RNA_pol  192 eellkaasylaklilksleelfkgakeiqkwLkelakliakslkae.........................klkstvvWttplglpvvqpYrkkkkk 263 
                  e+++ aasylak++l+s+++lfkgakeiq+wL+++a+liaks+ ++                         +++++vvWttplglp+vqpYr+ k+k
  CDO69952.1 1005 EDCWLAASYLAKKVLASIGDLFKGAKEIQTWLNTSARLIAKSIPEDrlissleeasptssrkrsttprwkkEQMTSVVWTTPLGLPIVQPYRAIKRK 1101
                  *******************************************999*******************99997549************************ PP

                  EEESSSTTE--EEEEESCEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--EEESSSEEEE-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH CS
     RNA_pol  264 qvktalqsvvlsksekkdpvnkrkqkqafpPNfiHslDathmlltaleckeegltfaavHDsfwthaadvdelnkilreafvklhsedilerlaeef 360 
                  qv ta+qsv++s+++  ++vn++kq++afpPNfiHslDathm+ltalec+++gltfa+vHDs+wtha ++d++n i+r++f++lhs+d+l+ la+ef
  CDO69952.1 1102 QVMTAIQSVFISDPNVPSTVNAQKQASAFPPNFIHSLDATHMMLTALECRSQGLTFASVHDSYWTHAGSIDQMNAIIRDTFIALHSSDVLSALAQEF 1198
                  ************************************************************************************************* PP

                  HTTSTGGGSS....................................................................................... CS
     RNA_pol  361 kerykkslllakvkkksevakkika........................................................................ 385 
                  +ery +++++    + s++++   +                                                                        
  CDO69952.1 1199 RERYADYKVPLVALSGSSMKQLNLNpeklnvssedikvlteatadsdpaekseedsllladgedadldaeaeqaekpkrkrrtqqqmvedqqrmled 1295
                  ******999888777777666655588899******************************************************************* PP

                  ................................................SS-------S-SGGGGGG-TTTB. CS
     RNA_pol  386 .........................................vlvpl..elpevPkkGeldveevkeskYffs 414 
                                                            +v+l   lp++P+kG +dv+++k+s+Yffs
  CDO69952.1 1296 deadldldaesepedggkpkrkrapnkkkasqeiveqrlggKFVNLvdILPPLPAKGMFDVKAIKDSQYFFS 1367
                  *****************************************444444479*********************7 PP

>> RPOL_N  DNA-directed RNA polymerase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.6   0.4  3.4e-101     2e-97       1     336 []     363     686 ..     363     686 .. 0.87
   2 ?   -3.4   3.3      0.83   4.9e+03     125     172 ..    1263    1306 ..    1235    1336 .. 0.49

  Alignments for each domain:
  == domain 1  score: 326.6 bits;  conditional E-value: 3.4e-101
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTGG.THHHHHHHHHHHHHHHHHHHTSSSS--HHHH.....................HTTTS-HHHHHHHHHH CS
      RPOL_N   1 rQlrlEedsveaaverwreeaeelkkrgla.tslsskslnallweWyealeeaikeelekveksekk.ekkteedkdraeygpfLrllppeklAaitil 97 
                 rQ+ lE++ ++ aver++ +ae  ++ gl  + l+s+ l+ ++w+W+++l+ +i+ e++++ ++e+  ++ +++ kd   + pfL++l+pekl+ itil
  CDO69952.1 363 RQRLLEQSVYNVAVERMKRQAELFDQLGLPkQGLHSTDLRTWMWHWHQKLQSRIEAEIQNLLAEERViARMKRKPKDAILLTPFLNQLKPEKLSLITIL 461
                 8****************************86889999***********************99444433666788999999******************* PP

                 HHHHHHTSSS....-BHHHHHHHHHHHHHHHHHHHHHHHHHTTT.TTCHHHHHHHHSTSHHHHHHHHHHHHHHHSHSSSTTT-TT............SS CS
      RPOL_N  98 ellsllstggvdkgvkvarlaisvGkaveeeyraeqlkkkekkkkkkkkkkekkvkklkkkkkeakealakekeeekeelkrekaeklaeeeeekeeee 196
                 e+++l+++g+v++g+k+ar++ svG+ave e++ae +kk                + +++  +     +  +++  +e ++++ a +   e +e+++ e
  CDO69952.1 462 EVMNLHGSGNVQDGMKTARALLSVGRAVESEVKAEIAKKTP---------VPVPTAATTDGPN-----NVFSEAGYRELQAHRMAARRLLEDSEDTQSE 546
                 ***************************************11.........1111222222222.....222222233222222222222223334789* PP

                 SCHHHHHHHHHHHHHHHHHHSTSEEEEE.....................ESTT-EEEEEE-HHHHHHHHHHHHHTTS-TSS--BSS--B--SSSBSEBS CS
      RPOL_N 197 WpqeirakvGavLislLletakvpvtaedpetgekvteeqPAFyhsyqykkgkkvgviklnpelvkllkreplrdtltprhlPMlvpPkpWtsynkGGY 295
                 W+q +r+kvG++L+++L++ a+v+++ +dp+tge +teeqPAF+hsy+y++g+k+gvik+np+++++++++p+ +tl+prhlPMlv+PkpW syn+GGY
  CDO69952.1 547 WTQLVRVKVGSFLVDCLMDIATVQRSITDPRTGEVITEEQPAFFHSYEYQRGHKLGVIKFNPAVAERMSKDPIAETLHPRHLPMLVKPKPWLSYNNGGY 645
                 *************************************************************************************************** PP

                 SSSSSBSEE-SS........HHHHHTB--HHHHHHHHHHHT CS
      RPOL_N 296 llsptklmRtkdskeqkeylkaasergdldqvfkgLdvLGk 336
                 l+++t +mR+k+s+eq+ yl++as++g l+ vf+gLdvLG+
  CDO69952.1 646 LYNRTWAMRFKESREQELYLRHASDAGRLELVFAGLDVLGS 686
                 ****************************************6 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.83
                  HHHHHHHHHHHHHHTTT.TTCHHHHHHHHSTSHHHHHHHHHHHHHHHS CS
      RPOL_N  125 veeeyraeqlkkkekkkkkkkkkkekkvkklkkkkkeakealakekee 172 
                     + +aeq++k ++k+ +++++ ++ ++++ ++ ++  +    ++e+
  CDO69952.1 1263 ADLDAEAEQAEKPKRKR-RTQQQMVEDQQRMLEDDEADLD---LDAES 1306
                  44455555555533332.2222222222222222222222...22222 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   5.6e-08   0.00034       2      45 ..     147     202 ..     146     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.6e-08
       PPR_2   2 dvvtyNtlIsglc.........kkgk.veeAfklfneMkk..rglePnsyTysili 45 
                 dv  yN+ ++++          ++ + +eeA+ l+n+M++    ++Pn+ Ty  ++
  CDO69952.1 147 DVRYYNHFLHAYIemattkdsaHRDMwIEEAWMLYNDMEQgnEPVQPNANTYALML 202
                 5667999999999999999998555559************53467*******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.55
# Mc/sec: 7489.92
//
Query:       CDO69953.1  [L=224]
Description: hypothetical protein BN946_scf184836.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-13   49.7  16.0    1.3e-12   47.8  16.1    1.9  1  SUR7           SUR7/PalI family
     0.0069   16.2   4.0       0.02   14.7   3.7    1.9  1  Claudin_2      PMP-22/EMP/MP20/Claudin tight junction
  ------ inclusion threshold ------
       0.29    9.2   1.7       0.37    8.9   1.7    1.1  1  UPF0182        Uncharacterised protein family (UPF0182)
        3.4    7.3   7.0       0.49   10.1   1.9    1.9  2  Tetraspanin    Tetraspanin family


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8  16.1     3e-16   1.3e-12       2     210 ..       6     189 ..       5     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3e-16
        SUR7   2 rlillflslaalilllfailgsiknstpltsiylskfdls.gldlaqi.....gladvysfgvwgyCdnsdvnytkCskpkagypfdpleelnsesngk 94 
                 ++  ++++l a++ll+++ ++ +    +lt + +++++   g +   +     +     +fg+w  C ++++n++ Cs++  +y  +   ++n + ++ 
  CDO69953.1   6 HIPGVIFLLCAFVLLFLVSISLP----YLTALDIARVKFKsG-SP--SvgqdsNAIHELRFGTWANCWYENDNVRACSPADNAYTTT---IYNGGRQDF 94 
                 677899********999999988....999777777777722.22..233567677778********************99999666...777777765 PP

        SUR7  95 vdlPsnlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslgl 193
                 v           ++   ++ ++++h++a+  +fi+l+++l  ++        +++l++l ++l++l+tl+a+++d++l++ v++++  ++++   s   
  CDO69953.1  95 V-----------TIGASWTRGLAVHPVATGVTFIALLLSLSTHV------T-FTLLASLTAFLAALLTLIAFAIDIALYAWVKHQV--GKLDGVGSNTD 173
                 4...........234466779**********************9......4.99********************************..44444444444 PP

        SUR7 194 kflafaWlalaaallvv 210
                 +  +  Wl+++  ll++
  CDO69953.1 174 TAPG-FWLTFVSFLLLC 189
                 4555.577777666665 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   3.7   4.5e-06      0.02       4     114 ..      18     141 ..      14     193 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
   Claudin_2   4 vvllliAfatdyWlvldvartei.......eenkataklahlGlwriCfksevdeesenktelfvvltqasn.....pfekkeeeivsisatsllalar 90 
                 v+l+l++++++y   ld ar ++       ++ ++ +   ++G w  C++++  +   ++ +++ + t  +n     + +   +  +  ++++      
  CDO69953.1  18 VLLFLVSISLPYLTALDIARVKFksgspsvGQDSNAIHELRFGTWANCWYENDNVRACSPADNAYT-TTIYNggrqdFVTIGASWTRGLAVHPVATGVT 115
                 4679*********99******9977766554999999999**********9988888888885555.55666677554444455555555544444444 PP

   Claudin_2  91 fvqvlliLs..lvlivlavvlgllal 114
                 f+++ll Ls  +++ +la ++++la+
  CDO69953.1 116 FIALLLSLSthVTFTLLASLTAFLAA 141
                 44433333311112222222222222 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.7   8.3e-05      0.37     207     277 ..      81     154 ..       4     165 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 8.3e-05
     UPF0182 207 ryellys...krg.vvtGagYtdvnavlpaktilavialvvavlllvai.vlkklklplialallvllaillgvvl 277
                  y+ ++    +++ v++Ga++t   av p+ t +++ial++++   v++ +l +l+  l+al++l+++ai  + +l
  CDO69953.1  81 AYTTTIYnggRQDfVTIGASWTRGLAVHPVATGVTFIALLLSLSTHVTFtLLASLTAFLAALLTLIAFAI--DIAL 154
                 4443333355333489****************************99999667776555555555555555..3322 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.21   9.2e+02      81      93 ..      11      23 ..       5      48 .. 0.66
   2 ?   10.1   1.9   0.00011      0.49       6      82 ..     134     210 ..     129     213 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
                 XXXXXXXXXXXXX CS
                 xxxxxxxxxxxxx RF
  Tetraspanin 81 tfsllllvlflle 93
                 +f+l+ +vl++l 
   CDO69953.1 11 IFLLCAFVLLFLV 23
                 3333333333322 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
                  XXXXXXXXXXXXXXXXXX..XXXXXXXX.....................XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   6 fffnllfwligivllavG..vwlrlkhaeaalacllsesaedpailaillivvGv.llfllgflGcigalkenkcllltf 82 
                   ++++l  l+ ++++a+   +++++kh+  +l    s+++++p +    l  v++ ll++ g+  c+g ++++    +t+
   CDO69953.1 134 SLTAFLAALLTLIAFAIDiaLYAWVKHQVGKLDGVGSNTDTAPGFW---LTFVSFlLLCFAGCTVCFGRRRDRMSGATTY 210
                  5677777788888888743388888999888888877777777766...5555443555555555777777766666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 1258.80
//
Query:       CDO69954.1  [L=145]
Description: hypothetical protein BN946_scf184836.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-18   66.8   0.0    3.1e-18   66.4   0.0    1.3  1  Histone        Core histone H2A/H2B/H3/H4
    1.9e-11   43.5   0.1    1.9e-11   43.5   0.1    2.1  2  Histone_H2A_C  C-terminus of histone H2A
     0.0063   16.8   0.0     0.0092   16.3   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   5.2e-22   3.1e-18      51     131 .]      29     109 ..       2     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 5.2e-22
                 HHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  51 irkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +r  q ++++ + ++p+ R++r ++++++ + ri a+a ++ +++lE+l++e++e+A++++k+ + ++itp+++qlA+r++
  CDO69954.1  29 QRVLQTRSAKAGLQFPVGRIHRYLKQRTQHNVRIGAKAAVYTTAILEYLTAEVLELAGNASKDLRVKRITPRHLQLAIRGD 109
                 67789999***********************************************************************75 PP

>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.5      0.36   2.2e+03      27      34 ..       5      12 ..       4      13 .. 0.86
   2 !   43.5   0.1   3.2e-15   1.9e-11       1      33 [.     110     141 ..     110     144 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
  Histone_H2A_C 27 pkktkkkk 34
                   pkk++k+k
     CDO69954.1  5 PKKGSKAK 12
                   99*99998 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.2e-15
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkk 33 
                    EEL++L + +TIA+GGVLP Ihk+L   k+k +
     CDO69954.1 110 EELDTLVR-ATIAGGGVLPFIHKNLVQGKKKAA 141
                    9*******.*****************6666654 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0092       2      65 .]      42     106 ..      41     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    ++P+ r+ + +k+  + + +i   A ++ + ++e    e+++ A    k+ + K i++ h++lA+
     CDO69954.1  42 QFPVGRIHRYLKQRtQHNVRIGAKAAVYTTAILEYLTAEVLELAGNASKDLRVKRITPRHLQLAI 106
                    69************9************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.54
# Mc/sec: 815.27
//
Query:       CDO69955.1  [L=351]
Description: hypothetical protein BN946_scf184836.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-52  178.7   0.0    1.8e-52  178.3   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   0.0     1e-56   1.8e-52       1     278 [.      11     313 ..      11     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 1e-56
                   .EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........--SSSTTSSSS-HH CS
  Aldo_ket_red   1 elglGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........dlrdaeiksglske 84 
                   ++++G++++g +     ++ + +++ ++l+ +  +G   +DtA++Y  g+see+l++    +++k+  +++ tK+        +++ a+ + ++s+e
    CDO69955.1  11 NIVMGAATFGEPgregsRVHDVKDVEAILDVFEAHGHYEVDTARIYTGGTSEEYLAK----AGWKKRGLLVDTKLlpnagkpvPFGGATERISHSPE 103
                   599*******9999995555555666666666699999****************933....3678****************9999999********* PP

                   HHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--.HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHH CS
  Aldo_ket_red  85 niresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfs.veqleka...kkkkkvkivavqveynllreleeeglle 177
                   ++r+ le slk Lgtd v +++lH pd+++p +e +l+a++el+k+Gk + +GvSn+  +e  e +   k+ ++++++++q  yn   +  e +l++
    CDO69955.1 104 DLRKHLEISLKALGTDSVEIFYLHGPDRTTP-YEVTLKAVDELYKQGKFKRFGVSNYMsWEVAEMVaicKNNGYIQPTVYQGVYNAIHRKVEPELFP 199
                   *******************************.*************************97777777799*******************999******* PP

                   HHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS.....TT-SEEE CS
  Aldo_ket_red 178 lckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd........ertsknldaaeelselakehgvslaqlalryalsq.....pavgivi 261
                    ++k g+++ a+ plggG++tgky+s++dk + ++r d  +          +t   + a+++l+++a  h+ ++a++alr++ ++     +++  v+
    CDO69955.1 200 CLRKFGIAFYAFNPLGGGFFTGKYRSPDDKVEPGSRFDASKGmgqlyrarYWTLPYFRALSTLQSVASAHDLTMAEIALRWLAHHsllsrEKGDAVL 296
                   *******************************99999998888*******99999999**************************99999999****** PP

                   E--SSHHHHHHHHGGGG CS
  Aldo_ket_red 262 pgasnieqlednldale 278
                   +gas+i+++e+nl  le
    CDO69955.1 297 IGASSIAHVEQNLLDLE 313
                   ************96665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 1932.80
//
Query:       CDO69956.1  [L=364]
Description: hypothetical protein BN946_scf184836.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-40  137.9   0.0    6.7e-21   74.7   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   3.7e-25   6.7e-21       5     142 ..      20     165 ..      17     171 .. 0.91
   2 !   61.2   0.0   4.9e-21   8.7e-17     172     293 ..     217     352 ..     211     353 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 3.7e-25
                   E-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........--SSSTTSSSS-HHHHHH CS
  Aldo_ket_red   5 Gtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........dlrdaeiksglskenire 88 
                   G++++g +     ++ + +++ ++l+ ++ +G   +DtA+ Y  g+see+lG++  +    +  ++i tK+        + + a+ + ++s+e++r+
    CDO69956.1  20 GAMTFGEPgkegaRVHDLKDVEAILDIFQAHGHYEVDTARTYAGGTSEEYLGKINWQ----KRGLLIDTKLypnaastrWRGSAAERISHSPEDLRK 112
                   788888878888777788899999999************************997655....889*******9999999778888889999999**** PP

                   HHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES-- CS
  Aldo_ket_red  89 sleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfs 142
                    l+ +lk L+td v +++lH pd+++p +e +l+a+++l++eGk + +G+Sn+ 
    CDO69956.1 113 FLDIQLKALNTDSVEMWYLHGPDRTTP-YEVTLKAVNDLYEEGKFKRFGISNYM 165
                   ***************************.************************96 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 4.9e-21
                   HTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS.....T CS
  Aldo_ket_red 172 eegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd........ertsknldaaeelselakehgvslaqlalryalsq.....p 255
                   e +l++ ++k g+ +  + plggG++tg+y+s +d+ + ++r d +++         + +  + a+e+++++ak h+ ++a++alr++ ++     +
    CDO69956.1 217 EPELFPCLRKFGISFYEFNPLGGGFFTGRYRSLNDPVEPGSRFDPEKSqgqnyrarYWKEPYFRALEQIEAVAKRHNLTMAEIALRWISHHslmkrE 313
                   679999999**************************99988888877778889**988888899**************************99999999 PP

                   T-SEEEE--SSHHHHHHHHGGGG-.---HHHHHHHHHHH CS
  Aldo_ket_red 256 avgivipgasnieqlednldalel.klseeevaeldell 293
                    +  v++gas+++++e+nl  le  +l+ee+++ lde++
    CDO69956.1 314 HGDAVLIGASSVKHIEQNLIDLEKgPLPEEVLKVLDEAW 352
                   **********************999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2555.94
//
Query:       CDO69957.1  [L=83]
Description: hypothetical protein BN946_scf184836.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   34.2  13.8    2.5e-08   34.2  13.8    1.4  2  IATP      Mitochondrial ATPase inhibitor, IATP
     0.0019   17.1   0.8     0.0022   16.9   0.8    1.0  1  DUF3573   Protein of unknown function (DUF3573)
     0.0061   15.5   6.5     0.0061   15.5   6.5    1.0  1  Spc7      Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.023   14.0   5.3      0.023   14.0   5.3    1.0  1  HemX      HemX, putative uroporphyrinogen-III C-methyltransfe
      0.035   14.5   2.4      0.042   14.3   2.4    1.2  1  DUF4140   N-terminal domain of unknown function (DUF4140)
      0.043   13.3   2.2      0.052   13.0   2.2    1.1  1  DUF4349   Domain of unknown function (DUF4349)
      0.085   12.1   6.0        0.1   11.9   6.0    1.1  1  EAP30     EAP30/Vps36 family
       0.11   12.6   3.2       0.15   12.2   3.2    1.1  1  CRA       Circumsporozoite-related antigen (CRA)
       0.14   11.5   5.5       0.15   11.4   5.5    1.1  1  DUF4407   Domain of unknown function (DUF4407)
       0.22   11.7   9.6       0.27   11.4   9.6    1.2  1  IFT20     Intraflagellar transport complex B, subunit 20
        0.3   10.9   9.9       0.38   10.5   9.5    1.4  1  DivIC     Septum formation initiator
       0.33   10.0   6.6       0.33   10.0   6.6    1.1  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1


Domain annotation for each model (and alignments):
>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2   3.2e+03       4      20 ..       4      18 ..       1      29 [. 0.44
   2 !   34.2  13.8   1.7e-11   2.5e-08      49      96 ..      28      75 ..      12      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
        IATP  4 qtlaktltasrpvsaas 20
                  +a+ + a +p+ aa 
  CDO69957.1  4 RIAARSV-ACAPR-AAM 18
                4455555.44553.222 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 1.7e-11
        IATP 49 gdafgkrEaAsEeeyirqrekekLaeLkeklaeqkeHleeleeHieai 96
                 +af+k+E+A+E++y rq+eke+L++L++++a+++  le+l++  +++
  CDO69957.1 28 EGAFNKKEKAHEDQYARQHEKEQLEKLRKQIAQKQAELEQLQKQHNEL 75
                68**************************************98766665 PP

>> DUF3573  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.8   1.5e-06    0.0022      20      67 ..      26      73 ..      15      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
     DUF3573 20 ysedsasyaesneqtsksnlidkelilklqkqikelqaeinhlketkn 67
                yse +   +e +++ + +   +ke + kl+kqi++ qae+++l++++n
  CDO69957.1 26 YSEGAFNKKEKAHEDQYARQHEKEQLEKLRKQIAQKQAELEQLQKQHN 73
                666667777788888888999***********************9988 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   6.5   4.1e-06    0.0061     181     232 ..      34      82 ..      15      83 .] 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.1e-06
        Spc7 181 eeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleel 232
                 +e +++ + a++    +ke+Le+lr+++a+ +ae+e+++k+++elq   e++
  CDO69957.1  34 KEKAHEDQYARQ---HEKEQLEKLRKQIAQKQAELEQLQKQHNELQGTPEKK 82 
                 444444444443...6689999999999999999999999999999876665 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   5.3   1.5e-05     0.023      58     103 ..      34      79 ..      12      83 .] 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
        HemX  58 keqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsgae 103
                 ke+ +e + + q+ +e+le+l+k+++q+q++le+lq+q ++++g+ 
  CDO69957.1  34 KEKAHEDQYARQHEKEQLEKLRKQIAQKQAELEQLQKQHNELQGTP 79 
                 2223333344455689999999999999999999999999999874 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.4   2.8e-05     0.042      52      91 ..      36      75 ..      16      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-05
     DUF4140 52 vqvervpnreaeeeelkalraeleeledelaaledelaaa 91
                 + e ++ r++e+e+l++lr+++ + ++el++l+++ + +
  CDO69957.1 36 KAHEDQYARQHEKEQLEKLRKQIAQKQAELEQLQKQHNEL 75
                4556677777777778888888888888888777776655 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.2   3.5e-05     0.052     104     144 ..      37      77 ..      29      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
     DUF4349 104 rllallekaksvedlleiereLsevqaeieslegqlryLdn 144
                   ++ ++++ + e l ++ +++++ qae+e+l++q ++L++
  CDO69957.1  37 AHEDQYARQHEKEQLEKLRKQIAQKQAELEQLQKQHNELQG 77 
                 5556677888889999*********************9985 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.0   6.9e-05       0.1       6      51 ..      31      74 ..      29      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.9e-05
       EAP30  6 l.qrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhka 51
                + ++++++ ++y   + ++ +e+l++l++++a+ +++L++l ++h++
  CDO69957.1 31 FnKKEKAHEDQY---ARQHEKEQLEKLRKQIAQKQAELEQLQKQHNE 74
                555666666677...99****************************97 PP

>> CRA  Circumsporozoite-related antigen (CRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.2   9.9e-05      0.15      40      93 ..      27      75 ..      21      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-05
         CRA 40 kkkgkykknekevekaeekedeneedridvlkLikelekKeeeliivnKkkkkY 93
                 + g  +k+ek  e +     ++e ++    kL k++ +K+ el +++K+++ +
  CDO69957.1 27 SE-GAFNKKEKAHEDQYA--RQHEKEQ--LEKLRKQIAQKQAELEQLQKQHNEL 75
                44.667777776666644..3333333..37999*****************987 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.5    0.0001      0.15     119     160 ..      34      76 ..      20      83 .] 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
     DUF4407 119 eakelkeqlaaa.ltaelaeleaqiaalqaeidaaearldalr 160
                 ++k++++q+a +  +++l++l++qia+ qae+++++++ ++l+
  CDO69957.1  34 KEKAHEDQYARQhEKEQLEKLRKQIAQKQAELEQLQKQHNELQ 76 
                 3344444443332555566666666666666666666655554 PP

>> IFT20  Intraflagellar transport complex B, subunit 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.6   0.00018      0.27      74     108 ..      44      78 ..      30      83 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
       IFT20  74 akqreaeqqqlqaliaekkaeleRlrvelesLqkv 108
                 ++  +++ ++l ++ia+k+aele+l+ +++ Lq +
  CDO69957.1  44 RQHEKEQLEKLRKQIAQKQAELEQLQKQHNELQGT 78 
                 3335566688999*******************975 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   9.5   0.00026      0.38      16      44 ..      48      76 ..      38      81 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
                XXHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 16 llaykqlkqeiaalqaelaklkaeneeLe 44
                  ++ +l+++ia++qael++l+++ +eL+
  CDO69957.1 48 KEQLEKLRKQIAQKQAELEQLQKQHNELQ 76
                45677788888888888888888888876 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.6   0.00022      0.33      52      94 ..      34      76 ..      22      83 .] 0.51

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00022
       Atg14 52 keeaeqledkiknkkakleelksliadlrerlqelkdklsqlk 94
                ke+a++++ + +++k++le+l+++ia+++++l++l+++  +l+
  CDO69957.1 34 KEKAHEDQYARQHEKEQLEKLRKQIAQKQAELEQLQKQHNELQ 76
                3333344444444555555555555555555555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3351  (0.186904); expected 358.6 (0.02)
Passed bias filter:                     1082  (0.0603492); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 609.61
//
Query:       CDO69958.1  [L=125]
Description: hypothetical protein BN946_scf184836.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-25   87.5   3.1    7.4e-25   86.7   3.1    1.3  1  ATP_sub_h  ATP synthase complex subunit h


Domain annotation for each model (and alignments):
>> ATP_sub_h  ATP synthase complex subunit h
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   3.1   4.1e-29   7.4e-25       3      68 ..      22      87 ..      21      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 4.1e-29
   ATP_sub_h  3 fsttavrrkDlvqdLYlkeLkaykpkplkaadaegaVkkwsaPaaPkaPeleadlaseLkaYeaqe 68
                fst+av+rkDlvq+LYlkeLk+ykp+p+ +++++g Vk+++ P+aP+ P+l++dlaseL+aY+a+e
  CDO69958.1 22 FSTSAVARKDLVQELYLKELKSYKPPPQPQDAHVGVVKNFQHPPAPQPPTLPTDLASELSAYDAAE 87
                9**************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 1017.36
//
Query:       CDO69959.1  [L=306]
Description: hypothetical protein BN946_scf184836.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-35  123.2   0.6    1.3e-35  122.8   0.6    1.1  1  HEM4      Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.6   7.3e-40   1.3e-35       1     230 [.      18     293 ..      18     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 7.3e-40
                 .HHHHHHHHTTEEEEE---EECCE......CCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHH.........HTT---HHHHHCSEEESSHHHH CS
        HEM4   1 delaealearGaeplelPlieiep......aedraelraalddleagkydwliftSanavealfealk.........reeedvkalaslkvaavGpaTa 84 
                 d+++ea++arG+ p+ +P++e+++       e  ++ + ++d+ e+++y ++i+tS +a e++ + +          ++++   ++++++ +avG a+a
  CDO69959.1  18 DKYEEAFRARGYRPVSVPVLETVHknlaklSEVVRRGEVLFDASEDTTYAGVIVTSGRACETWRTVVHdlsssssssEATHQAPDWSTVPFYAVGAASA 116
                 5799********************66655433333334455777899***************9999999*******9999******************* PP

                 HHHHHTT.........---SEE-..SSSHHHHGGGS-......---EEE....EEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHH CS
        HEM4  85 raLeelg.........lrvdlvpseegtaegLaeelae.....slagkr....vlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkeal 165
                  aL ++g          r+   ++e+gtae+La+++ +          r    +l+l g++ rd+l++ L+e g+e+d + vY t++ + ++e+lk  +
  CDO69959.1 117 SALFSIGtaypsssyaPRDIRGGAESGTAEKLAHFILSdlartPS---ResktLLYLTGDKNRDTLPKILNEGGLELDSLQVYATQASSRFEEDLKSVF 212
                 *****99777777765444449999*********99995554423...145669*******************************88888888888888 PP

                 HTT--.....SEEEESSHHHHHHHHHH-S-HH..........HHHCTSEEEEESHHHHHHHH.HTT---SEEETS--HHHH CS
        HEM4 166 kagev.....davvftSpstvrnllellkdeg..........delkevkvaaiGptTaealk.klglkvdvvaeeptaegl 230
                 ++ +       ++v + ps+++++   + ++           +  + +++aaiGptT  +l+ +l ++v+vva++pt+++l
  CDO69959.1 213 EEAAPepaeqWWIVYFAPSAAKAVAPTIDKYFdlratdghstSAKRAARIAAIGPTTLTFLReDLKMEVAVVAKTPTPDSL 293
                 77555777779******************998**********999*****************99**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2226.62
//
Query:       CDO69960.1  [L=1347]
Description: hypothetical protein BN946_scf184836.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-19   69.4   0.0    8.6e-16   58.1   0.0    2.3  2  DUF1708        Domain of unknown function (DUF1708)
  ------ inclusion threshold ------
       0.01   16.4   1.2       0.01   16.4   1.2   10.7 10  Ribosomal_60s  60s Acidic ribosomal protein
      0.048   13.5   0.0       0.11   12.3   0.0    1.6  1  RhoGAP         RhoGAP domain


Domain annotation for each model (and alignments):
>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.4e-19   8.6e-16      93     219 ..     242     362 ..     140     376 .. 0.81
   2 !    8.9   0.0   0.00012      0.73     274     397 ..     446     638 ..     406     672 .. 0.76

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.4e-19
     DUF1708  93 gwdaYeeFkkkEkeselprdaFltfipkslssearasivydFldLlvaiaahgkknglggrklsrlaglwAFehkdk..gnsfeeglkswskaadAlsh 189
                 +w+ Y++F  +E+ s++p +aF++ +   l+ +++ + + + ld+++++aah+++ng++g kls+ +glw   +k++  +++  + +++w++a+  l h
  CDO69960.1 242 QWKWYQTFAEAERASSYPMNAFSDALVPQLP-PSHLQLLIATLDIVSSLAAHSEHNGISGSKLSKFFGLWLLTTKRSeqDDDWFSFYSRWERAGRILEH 339
                 6*********************998777776.788899999*****************************997655544889999************** PP

     DUF1708 190 LflayLrsllpekeketegsklprsLqkll 219
                 +fla  r  +         +k+p  L +l+
  CDO69960.1 340 IFLAHTRDEMAR-------KKMPLRLAELV 362
                 ****99864444.......45566666655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00012
     DUF1708 274 eareddalLkelfkeledivkalseeskrvlkaissanqsq..ss....stsledaswsrfkdigfeagl..eeee.................rpttps 347
                 + +e   +L ++   + +i++ +s+e+ r l  i ++ +++  ss    +  +     +r +  +++a+   +                     p  p 
  CDO69960.1 446 ANDEPEPILIHVD-GYPSISRIFSDETLRFLSLIPAESSNKgiSSvptiR--APRPPRKRSSSQNLSAKAngN--GkaptngspadrsaaspaSPSSPK 539
                 5555555666666.78899***************9666666654467542..222233333444444443221..133556777788888666444432 PP

     DUF1708 348 .Wadflssgl................................................kssqsdkkelelkeelepgelasvsrvdiddyFiwvWlssl 397
                  W+df ++g+                                                +++ +++ ++++     ++++  v  v++d++Fi  W   l
  CDO69960.1 540 dWMDFSTAGFgesaigkdfastlldkdvevttppverksskkrkaspgrsrgssvdnpATEPMHRVTNANGPAPPKSKSTVVDLVKLDEAFIDFWSDAL 638
                 599999999999999999999999999999999999999999********99999997556666655555555566677778899**********8766 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.4   1.2   1.7e-06      0.01      45      88 .]      33      72 ..      14      72 .. 0.61
   2 ?   -4.8   1.6         3   1.8e+04      51      61 ..     522     532 ..     507     539 .. 0.35
   3 ?  -14.3  16.1         3   1.8e+04      66      66 ..     784     784 ..     717     848 .. 0.71
   4 ?    1.6  10.5     0.071   4.2e+02      49      80 ..     869     899 ..     845     903 .. 0.67
   5 ?   -3.0   0.1       1.9   1.1e+04      39      66 ..     903     930 ..     900     935 .. 0.50
   6 ?  -18.2  30.3         3   1.8e+04      32      75 ..    1020    1063 ..     963    1082 .. 0.62
   7 ?   -8.2   9.9         3   1.8e+04      51      77 ..    1131    1157 ..    1102    1166 .. 0.55
   8 ?  -14.9  17.4         3   1.8e+04      50      72 ..    1206    1228 ..    1158    1245 .. 0.56
   9 ?   -4.2   5.6         3   1.8e+04      36      64 ..    1252    1278 ..    1244    1296 .. 0.53
  10 ?   -2.9   1.3       1.8   1.1e+04      48      71 ..    1307    1330 ..    1280    1344 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s 45 klaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88
                   +   +++++ +aa+ +++a++ ++   e+e+  e++ d Gf+LF
     CDO69960.1 33 A--VSPTVSPSAAKFEESAQKPKDRGREKEK--EKEKDVGFSLF 72
                   2..3444455555555555555555555555..89********9 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 3
                    XXXXXXXXXXX CS
  Ribosomal_60s  51 aaaaaaaaaaa 61 
                    +++a  +aa+ 
     CDO69960.1 522 GSPADRSAASP 532
                    22222222221 PP

  == domain 3  score: -14.3 bits;  conditional E-value: 3
                    X CS
  Ribosomal_60s  66 a 66 
                    +
     CDO69960.1 784 K 784
                    1 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.071
                    XXXXXXXXXXXXXXXXXXXXXXXXXXX.XX-- CS
  Ribosomal_60s  49 aaaaaaaaaaaaaaaaaaeekkkeeeeeEeed 80 
                    a a+aa++aaa+a a+a+ e  k e + E ed
     CDO69960.1 869 ASASAAPSAAADAPAPAKVEPMKTEDA-ETED 899
                    456666666666666666666666665.3333 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 1.9
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  39 langaaklaaaaaaaaaaaaaaaaaaaa 66 
                    la+++ + ++a  ++a++ +  a a+a+
     CDO69960.1 903 LAAPQDAHVPADVVPASGTTDTAPAEAD 930
                    5555555444555555555554444443 PP

  == domain 6  score: -18.2 bits;  conditional E-value: 3
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s   32 gkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeee 75  
                       + + +++++a +  +++++aaaa++a+ ++aaa ++ +e+ +
     CDO69960.1 1020 HAEAQAAVEEAAVQQEESPTVAAAAEEAGISPAAAVAATEEPSA 1063
                     44444444444444334444444444444444444444333332 PP

  == domain 7  score: -8.2 bits;  conditional E-value: 3
                     XXXXXXXXXXXXXXXXXXXXXXXXX.X CS
  Ribosomal_60s   51 aaaaaaaaaaaaaaaaeekkkeeeeeE 77  
                      +  aaa+a+ + + + +   e+e++E
     CDO69960.1 1131 MSVEAAAQAEPSVPSEPALGPEPEPAE 1157
                     233333334444444444444444332 PP

  == domain 8  score: -14.9 bits;  conditional E-value: 3
                     XXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s   50 aaaaaaaaaaaaaaaaaeekkke 72  
                      a  a+a++a +a+a++e+ +  
     CDO69960.1 1206 EAPLAPAEPALQAEAPKEQDADV 1228
                     23333344444444443333333 PP

  == domain 9  score: -4.2 bits;  conditional E-value: 3
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s   36 eellangaaklaaaaaaaaaaaaaaaaaa 64  
                     e+++ ++aa    a aaa + a+a a   
     CDO69960.1 1252 EDVIVQPAAE--DASAAALPEAPAVATGS 1278
                     5666666666..33333333333333222 PP

  == domain 10  score: -2.9 bits;  conditional E-value: 1.8
                     XXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s   48 aaaaaaaaaaaaaaaaaaaeekkk 71  
                     a    +a+++ + ++ + ae k++
     CDO69960.1 1307 AEREPTASQGVEVKEGETAETKPE 1330
                     222333444444444444444433 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      78     149 ..     247     317 ..     204     321 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                 HHHHHHHTSSSHHHHHHHHHHHHT.TS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TSS CS
      RhoGAP  78 eelieaaksedeeerlealkelle.kLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpkse 149
                 +++ ea  ++  +  ++a++++l  +LP+ + ++L + l+  + +a++s+ n  + + L+  f+  Ll +k +
  CDO69960.1 247 QTFAEA--ERASSYPMNAFSDALVpQLPPSHLQLLIATLDIVSSLAAHSEHNGISGSKLSKFFGLWLLTTKRS 317
                 444433..23333446666665555****************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.48
# Mc/sec: 8487.91
//
Query:       CDO69961.1  [L=189]
Description: hypothetical protein BN946_scf184836.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   18.8   0.1     0.0043   17.9   0.1    1.5  1  Pilin_N   Archaeal Type IV pilin, N-terminal


Domain annotation for each model (and alignments):
>> Pilin_N  Archaeal Type IV pilin, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.4e-07    0.0043      10      42 ..      84     116 ..      83     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-07
     Pilin_N  10 iLmvaitvIlaAviaafvlglasneekapqasi 42 
                 iL++  +vI+aAvi++ v+g+ ++++ka+ ++ 
  CDO69961.1  84 ILLLGGVVIAAAVIGGAVGGTVGPKHKAATVAT 116
                 899999***************888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1465.38
//
Query:       CDO69962.1  [L=176]
Description: hypothetical protein BN946_scf184836.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1245.67
//
Query:       CDO69963.1  [L=335]
Description: hypothetical protein BN946_scf184836.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2477.61
//
Query:       CDO69964.1  [L=525]
Description: hypothetical protein BN946_scf184836.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-32  112.4   0.0    3.2e-32  111.9   0.0    1.2  1  p450      Cytochrome P450
      7e-23   81.5   0.0    9.5e-23   81.1   0.0    1.1  1  Lyase_1   Lyase
    3.2e-06   27.6   0.1    3.4e-05   24.3   0.0    2.8  3  ADSL_C    Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   5.3e-36   3.2e-32     289     409 ..       1     122 [.       1     124 [. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 5.3e-36
                 HHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGG CS
        p450 289 LaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeR 387
                 +a +P++q++ +eE+d v+g  r p+++d ++lpy++av+ E LR   ++p++l +++ ++ + rg  ip+G+ v+vn++ l++dp+vfp+Pe+F+peR
  CDO69964.1   1 MALYPDIQKRSQEEVDAVVGAERLPEHADKASLPYVQAVLSECLRWNVILPFGLVHRCQEENEYRGWRIPEGSLVMVNVWMLLNDPDVFPEPEVFRPER 99 
                 799************************************************************************************************ PP

                 GB-TTS..CTESSCTT--TTEEGG CS
        p450 388 Fldekg..nskrksfaflPFGaGp 409
                 +l++++  + + ++ a l FG+G+
  CDO69964.1 100 YLKDDEldP-DAPDPAVLVFGFGR 122
                 *****9954.5899*********7 PP

>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   1.6e-26   9.5e-23      48     309 ..     160     416 ..     138     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.6e-26
                 HHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH CS
     Lyase_1  48 eeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkeka 146
                  + +++i+ ++++l  ++ + qf+++  +e+      m+     g   +   ++++ +h g++s  + + a  +++++al + Ll +l   id + + a
  CDO69964.1 160 PISDEAIEQMKANLH-LDPK-QFEIAAVEEKKRRHDVMAHVHTFG---QVAPAAAGIIHLGATSCYVTDNADLIFIREAL-TLLLGKLAVVIDRFAKFA 252
                 556666666666666.6666.777777766655544444444444...2457999*************************.77**************** PP

                 HHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHH.HHHCST..EESSSHHHHHHC- CS
     Lyase_1 147 kefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtglnadpefaelvakela.kvtglp..vkapnsfeavsdr 242
                 ++++d + +G+Th q+A+ +t g+    + ++l  d+ ++k++++ l    ++g t++ + + +    ++  ++el  +vt l   + a + + ++ +r
  CDO69964.1 253 QQYRDLPTLGFTHFQPAQLTTVGKRATLWIQELLWDLRNIKRARDDLGFRGVKGTTGTQASFLTLFDGDHDKVEELDrRVTELSgfSYAYPVTSQTYSR 351
                 ******************************************************9999988888777677888888877887777566778888***** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHH CS
     Lyase_1 243 DavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlElltgvagr 309
                    +++l+ l+ + +   k+a Dlrll++  + +ve+ + ++++GSS M  K+NP  +E + + a+ 
  CDO69964.1 352 KIDIDVLAPLASFGATAHKLATDLRLLAN--LKEVEEPFEATQIGSSAMAYKRNPMRSERICSLARH 416
                 *****************************..****************************99888765 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.4e+04      44      66 ..       5      28 ..       5      30 .. 0.68
   2 ?   -1.5   0.0      0.66     4e+03      40      64 ..      82     102 ..      78     103 .. 0.74
   3 !   24.3   0.0   5.7e-09   3.4e-05       1      26 [.     484     510 ..     484     512 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                HHHHC.HHCHHHHHT-GGGCCTTH CS
      ADSL_C 44 pevkk.seeeldalfdpayylgsa 66
                p+++k s+ee+da+   ++   +a
  CDO69964.1  5 PDIQKrSQEEVDAVVGAERLPEHA 28
                577756888999987766665555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.66
                 HHT-HHHHCHHCHHHHHT-GGGCCT CS
      ADSL_C  40 Laadpevkkseeeldalfdpayylg 64 
                 L++dp+v  ++    ++f p++yl+
  CDO69964.1  82 LLNDPDVFPEP----EVFRPERYLK 102
                 66777776533....699*****97 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 5.7e-09
                 TGGGHHHHHHHHH.HTH-HHHHHHHHH CS
      ADSL_C   1 GlifservllaLv.kglgReeAyelVq 26 
                 +++++e++++a+v kg++R+eA+e ++
  CDO69964.1 484 PFMATENIIMAMVkKGGDRQEAHEKIR 510
                 79***********66*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3962.12
//
Query:       CDO69965.1  [L=970]
Description: hypothetical protein BN946_scf184836.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-117  393.5  21.4   1.6e-117  393.2  21.4    1.1  1  PigN           Phosphatidylinositolglycan class N (PIG-N)
    1.7e-11   44.3   2.4    3.3e-09   36.8   1.4    2.2  2  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
    6.1e-07   29.1   0.1      9e-07   28.6   0.1    1.3  1  Sulfatase      Sulfatase
    5.8e-06   25.9   0.1    1.1e-05   25.0   0.1    1.3  1  Metalloenzyme  Metalloenzyme superfamily


Domain annotation for each model (and alignments):
>> PigN  Phosphatidylinositolglycan class N (PIG-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.2  21.4  3.7e-121  1.6e-117       1     455 []     445     904 ..     445     904 .. 0.86

  Alignments for each domain:
  == domain 1  score: 393.2 bits;  conditional E-value: 3.7e-121
        PigN   1 eGLrYyqtYdrlfLrtivtlgylgWilyllltvl.klhvlkekkkkktdsktllalkflavlllllllvllllqkspltyylYllfPvlfweevlaerk 98 
                 eGLrY+qtYdrl++r iv+++ylgWi++ + ++l  + +         d   + a++++a+++l  +++l++ q+sp+++y+Y++fP++fw ++l++ +
  CDO69965.1 445 EGLRYLQTYDRLLIRGIVIAAYLGWIAFGAASILvPSSM--------ADVADSAAFHLVAAAILGGFWALFTKQRSPWSFYVYIAFPCYFWDQALSRAS 535
                 7*****************************988833222........2223334456777789999******************************999 PP

        PigN  99 .ilkeglkellkevksskslvkkllllllivlvlellvlgyfhreilsvlfvlla.lwpll.ygtsf..lkknsllsllWllsclllsvFpllpvekte 192
                       l ++++e   +  +++  l+  l+v++l+++v+gy+hr i+s+ fv+++ lwp++ +   +  l k+++l l+W++scl+++vFpll+v + e
  CDO69965.1 536 gP---LL-KFVREG-GAGPVMRYALRGGLVVAALQSMVAGYTHRYIWSAWFVVIGvLWPFVaW--PRelLAKHWRLLLAWTASCLVTAVFPLLNVHQAE 627
                 31...23.333433.4555656666666*********************************54..4445****************************** PP

        PigN 193 nltlvvlggllilliglllllksl...skksvsrallvqvllvvl..sllvtrssvsslqakqglpllnqvasWiilvlslvlpllksskp...lsRll 283
                 +l  +++gg+++ +ig++ l+k++    +++  ++++v  ll  l  s+l+++ +v +l++k+ +p   ++++W ++++ +  p++          R+l
  CDO69965.1 628 SLIAITAGGVAMYAIGMYGLFKIKypePRDANRHKVIVYWLLYELgwSVLFVNFIVWNLREKKPIPRSWRLIAWGTFLSCIATPFVFPVPCgkpHGRIL 726
                 *******************743334563444444455444444333699**************************9988888887765554666***** PP

        PigN 284 siflafaptfilLsisyEgLFyvvlsltlvlwieleaelkqe......keesekesesekkekekkksssrsltlsdlRialfflfflqvaFFGtGnia 376
                 s fl f+ +f+ L i++EgLFyv++sltl+lw+e+e+ l+ +       +  ++ +++ + ++++++ s++  + +dlRia+fflff+qvaFFGtGn+a
  CDO69965.1 727 SFFLGFGACFVWLAIGVEGLFYVAYSLTLCLWVEVETVLRAHsganthVSPPTNITSEGTIQRSSADASTYRPRADDLRIAVFFLFFVQVAFFGTGNVA 825
                 *************************************99888999887333444555556666677777888999************************ PP

        PigN 377 sisSFslssvyrfipvfspflmgaLlllKlliPfvlvsaalgalnkrlrlpssslfllvllisDvltLnFfflVkdeGS 455
                 sisSF+l++vyr++pvfspflm+aLl++K++ P++++++a+++ln+rl lp++slfl++l+++D++t++Ff  V+d+GS
  CDO69965.1 826 SISSFYLEPVYRLVPVFSPFLMAALLIFKIISPYIILAMAFSLLNARLDLPPFSLFLVALTLTDIMTITFFLNVTDTGS 904
                 ******************************************************************************9 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0014       6.1       1      57 [.      51     117 ..      51     124 .. 0.75
   2 !   36.8   1.4   7.3e-13   3.3e-09     156     238 ..     183     274 ..     131     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
                   EEEEEETT-B.........TTHHHHHGS....TSHHHHHHHH.HSEEESEEE-SSS-SHHHHHHHHHHSS- CS
  Phosphodiest   1 vlvislDGlr.........adlldrlae....llpnlaaLak.egvsapnlrpvfPtlTfpnhaslvTGly 57 
                   +++i+ DGlr         + ++    +     +p+l+++++ +g ++   ++ +Pt++ p+h++l+ G y
    CDO69965.1  51 LVLIVGDGLRadlllakngFAMIP---DapeiVAPHLRSIIEtRGAYGV-SHTRVPTESRPGHVALIGGMY 117
                   689999999944444333333333...2344789999999997788888.9***************98876 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 7.3e-13
                   H........HHCHTHSHHHHHCT.SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEH CS
  Phosphodiest 156 w........ldaafakvvlekel.ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadvs 238
                   w        l +a+ +++l+++l ++  +++++l ++Dt gH++ p+s+e  ++++ vD+ ++++ e+ +e   ++et+++ ++DHGm+++ 
    CDO69965.1 183 WvlehlrtlLHNATTDAALDARLrGEKTVFFLHLLGLDTTGHSHRPHSKEYMANIQVVDEIVKQTEELFREFYADDETAFVFTADHGMSHIG 274
                   333334444777887878888888999***************************************************************94 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1     2e-10     9e-07     209     288 ..     228     305 ..     114     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC......E CS
   Sulfatase 209 qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap......r 288
                  +  +y + +  vD+ +++  + ++e   +d+t +vft+Dhg s         +g++ +  ++ tr+Pl+vw++g   p       
  CDO69965.1 228 PHSKEYMANIQVVDEIVKQTEELFREFYADDETAFVFTADHGMSH--------IGNHGDGDPDNTRTPLIVWGKGVRGPlpdtfpS 305
                 5667899************************************98........7777788999************98885444431 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   2.4e-09   1.1e-05     117     198 ..     194     281 ..     174     307 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.4e-09
                    HHHHHHHHHHH.CC.-SEEEEEE-HHHHHHHTT-H..HHHHHHHHHHHHHHHH...HH.TTS-TTTEEEEEE-SSB--TTTSS..... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx...xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 117 vevaekaldailsgkfdlvvvniknaDmvGHtgdl..eatiaaieaaDeavke...il.daieqvdgilvvtADHgnaedmvkrdkqp 198
                     + +++alda l g+ +++++++   D  GH+  +  ++++a i+ +De+vk+   ++ +   ++++ +v tADHg     ++ d +p
     CDO69965.1 194 NATTDAALDARLRGEKTVFFLHLLGLDTTGHSHRPhsKEYMANIQVVDEIVKQteeLFrEFYADDETAFVFTADHGMSHIGNHGDGDP 281
                    567999****99*****************98776422789**********9862224413456788899*******998887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 6181.03
//
Query:       CDO69966.1  [L=446]
Description: hypothetical protein BN946_scf184836.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-63  215.7   3.2    1.5e-63  215.5   3.2    1.0  1  DAO              FAD dependent oxidoreductase
    2.6e-06   26.6   0.2    1.1e-05   24.6   0.2    1.8  1  Trp_halogenase   Tryptophan halogenase
    2.9e-06   26.7   0.0      0.001   18.4   0.0    3.0  3  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    6.7e-05   23.0   0.1    0.00015   21.9   0.1    1.7  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0027   17.7   0.1      0.028   14.4   0.1    2.3  2  NAD_binding_9    FAD-NAD(P)-binding
     0.0029   17.9   0.1      0.049   13.9   0.1    2.2  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.019   14.2   0.1      0.036   13.3   0.1    1.4  1  Thi4             Thi4 family
      0.034   14.7   0.1      0.034   14.7   0.1    2.7  3  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.11   11.9   0.1        7.9    5.7   0.0    2.3  2  GMC_oxred_N      GMC oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5   3.2   7.6e-67   1.5e-63       2     352 .]      39     426 ..      38     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 215.5 bits;  conditional E-value: 7.6e-67
                 EEEECTSHHHHHHHHHHHHTT........EEEEESS.SSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSST.TSEEEEEEEEE CS
         DAO   2 vviiGGGiiGlstAyeLarrg........Vtllekg.diagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgid.idyrrtGllsl 89 
                 +vi+GGGiiG++tAy+La ++        +tl+e++ + +++gaSg+++gl++  ++y++   el+ +s+    e  r  +e+ g++ +++r   + s 
  CDO69966.1  39 IVIVGGGIIGCTTAYYLASHPkfdrssttITLIEASkHGVAQGASGKAGGLVAK-WAYPK---ELVGVSF---PEHvRLAQEHDGPHrWGWRFVNCGSW 130
                 9*****************997788899********9677889************.87566...4555555...44434444444666688887666666 PP

                 ESS............................HHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT CS
         DAO  90 aad............................eeelealdkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealG 160
                 +                              ++e +a ++++a++l+ +l   ++++e++ + +p+ p  +g      t+qv+p+ +t ++++ a+++G
  CDO69966.1 131 EGRgeppaasepgtgvgsggrrkslektlglPSEADARKQRAASGLPEDL--NWIRPELTDAYSPMAP--AG-----ATAQVHPYLFTTSMLELAQERG 220
                 42224556666666666666666665555553444444444444454444..6*****9999999654..45.....47******************** PP

                 -EEEESECEEEEEEEE.....TCEEEEE.....EECTEEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE... CS
         DAO 161 veilegtevtgleeed.....gkvwgve.....rttpgendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe... 245
                 v++++g +vt+++  +       v+gv       ++p++   a+++++aaG+ws  l+   + l  pi+++r+++++++p++ ++ +p+ ++++     
  CDO69966.1 221 VRFVQG-KVTAVNI-NisgssRHVSGVTylphsSDSPETL-PATHIILAAGVWSPkLV---PSL--PIVGTRAHSITIRPRPGTPIAPYVLFTEIAlpg 311
                 ******.9999944.2334556677777877543333433.5699********99888...888..*****************9999999999888999 PP

                 EEETTTTEEEEEETTSEEEEEESSE....EETTCSSTSCSHHHHHHHHHHHHHHSGGG..CGEEEEEEEEEE..ETTSSEEEEEEE.TEEEEEEEEECT CS
         DAO 246 tdddgrgvyvtprkdgrvlvGgtad....eesgdddpevdeedidellealrklfPql..gdvlrkwaGlrp..lpdglpligetp.gvkglylatGhs 335
                 +     ++++++r+ ++v+++g +d    +e  d+ ++vd+++++ ++e+++ ++ +l  g+v +++a+++p   + g+p++ge+  + kgl++atGh 
  CDO69966.1 312 RGVKRASPEIYARPTNEVYCCGPGDdspvPETVDE-VQVDQAACESIREHVASISRELaeGEVDKRQACFLPvvSVGGGPIVGEAAtIAKGLIIATGHT 409
                 77778888888888999**9776666985555444.5*******************97567899********6338********445899********* PP

                 TTHHHHHHHHHHHHHHH CS
         DAO 336 ghGltlapatGkllael 352
                 ++G+ +ap+t+k+lael
  CDO69966.1 410 CWGICNAPGTAKALAEL 426
                 ***************97 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   5.3e-09   1.1e-05       1     186 [.      38     238 ..      38     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.3e-09
                     EEEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE-SSS---S..S-E..E--THHHHTHHHHT--HHHHCH...HCT-EEE-EEEEES...SSS CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgk...levtlveseeigtvg..vGe..atipsirkllrlLgideeeflr...eteatfKlgikFed...Wgk 82 
                     +ivivGGG+ G ++A +la + k +   +++tl+e+++ g+ +   G+  +++ +     +l+g++  e +r   e +++++ g +F++   W++
      CDO69966.1  38 NIVIVGGGIIGCTTAYYLASHPKFDrssTTITLIEASKHGVAQgaSGKagGLVAKWAYPKELVGVSFPEHVRlaqEHDGPHRWGWRFVNcgsWEG 132
                     69****************98765443489********9988763367755689999999******97776652227789********97666888 PP

                     CESEEEEE.SS-..--EETTEEHHHHHHHHHHTT--S-HHHHH-SCHHHHHTTB-SB-TT...S-B-S--EEEE-HHHHHHHHHHHHHHCT-EEE CS
  Trp_halogenase  83 kgeryihs.Fga.igkqlegvalhhywlkarargaaeeledysleavaakakkfsprekd...glsalsyAyhldaalyakfLrrvaearGvtrv 172
                     +ge+ + s  g+ +g   +  +l++     ++++a ++ +++ l++       + p  +d   +++      ++   l+   + + a++rGv+ v
      CDO69966.1 133 RGEPPAASePGTgVGSGGRRKSLEKTLGLPSEADARKQRAASGLPEDLN---WIRPELTDaysPMAPAGATAQVHPYLFTTSMLELAQERGVRFV 224
                     7776544313333566666677777665555555555555555554433...233333332335777777789999******************* PP

                     E--EEEEEE-TTS- CS
  Trp_halogenase 173 egkvvevqldedgr 186
                     +gkv+ v+++ +g+
      CDO69966.1 225 QGKVTAVNINISGS 238
                     *******9988775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.1e-07     0.001     137     175 ..      31      75 ..      10      87 .. 0.78
   2 ?    3.5   0.0     0.017        34      92     116 ..     246     278 ..     182     293 .. 0.66
   3 ?    0.8   0.0      0.12   2.3e+02      78     109 ..     373     408 ..     321     441 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.1e-07
                  CCSS-TSEEEEES-SHHHHHHHHHHHHHT-......EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxx RF
  Pyr_redox_2 137 klkllpkrivvvGgGyiGvElAaalaklgk......evtlveard 175
                  +    p++iv+vGgG iG+ +A +la+  k       +tl+ea +
   CDO69966.1  31 SMSTGPQNIVIVGGGIIGCTTAYYLASHPKfdrsstTITLIEASK 75 
                  4445569*****************999888788886799999876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.017
                  C......TCEEEEEESEEEE---EEE-BC..TC CS
                  x......xxxxxxxxxxxxxxxxxxxxxx..xx RF
  Pyr_redox_2  92 e......gdeekiaydklvlAtGssprdl..gi 116
                  +      ++ e++ + +++lA G ++ +l   +
   CDO69966.1 246 TylphssDSPETLPATHIILAAGVWSPKLvpSL 278
                  134444488899***********8766654533 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.12
                  EEESCEEEEETEEEC.....TCEEEEEESEEEE---E CS
                  xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  78 idpgkkkvklekkke.....gdeekiaydklvlAtGs 109
                  +d+ ++++    +++     g e    ++ l++AtG 
   CDO69966.1 373 VDKRQACFLPVVSVGggpivG-EAATIAKGLIIATGH 408
                  343443333322222455422.233335667777774 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   7.5e-08   0.00015       1      42 [.      41      88 ..      41     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.5e-08
                   EE--SHHHHHHHHHHHCC.TE.....EEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gf.....dvlllekrdrlGGraasyevpg 42
                   IvG+G+ G+++Ay+La + +f      ++l+e++ +   + as + +g
     CDO69966.1 41 IVGGGIIGCTTAYYLASHpKFdrsstTITLIEASKHGVAQGASGKAGG 88
                   9***************98744334446*****9988667777776666 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.4e-05     0.028       1      38 [.      40      78 ..      40      86 .. 0.90
   2 ?    0.4   0.0      0.29   5.7e+02     110     154 ..     214     268 ..     206     269 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
  NAD_binding_9  1 aivGaGprGlavlerLlara.kkkspleitlfdpsepga 38
                   +ivG+G+ G +++  L+++   ++s+++itl++ s++g 
     CDO69966.1 40 VIVGGGIIGCTTAYYLASHPkFDRSSTTITLIEASKHGV 78
                   7*******************999999********99973 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.29
  NAD_binding_9 110 rlpegvtvevhraevvdleeradg.......qavll.....adgaslaadaVvLAlG 154
                    +l ++  v++++++v++++ + +g       ++        ++ ++l a +++LA G
     CDO69966.1 214 ELAQERGVRFVQGKVTAVNINISGssrhvsgVT--YlphssDSPETLPATHIILAAG 268
                    454555788999888876654333112221121..1333323346788888888877 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.5e-05     0.049       1      41 [.      39      82 ..      39      93 .. 0.90
   2 ?    1.4   0.0      0.18   3.6e+02      77     101 ..     204     231 ..     191     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-05
                     EEEE--SHHHHHHHHHHHCTCCT-G...EEEEEESSHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvda...eitvadrskekleala 41
                     ++i+G+G +G  +a +la h ++d+   +it+++ sk+++++ a
       CDO69966.1 39 IVIVGGGIIGCTTAYYLASHPKFDRsstTITLIEASKHGVAQGA 82
                     89**********************9*9*********99977655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.18
                      SSGGGHHHHHHHHHHHT-EEEE...SS- CS
  Sacchrp_dh_NADP  77 sppissldvlkaCietgvhyvd...tsi 101
                       p+ ++ ++l+++ e+gv++v    t++
       CDO69966.1 204 HPYLFTTSMLELAQERGVRFVQgkvTAV 231
                      5777899999********9998555444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.8e-05     0.036      18      50 ..      37      74 ..      22      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-.....EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlk.....vailers 50
                +++vivG+G  G t+ayyla +p++      ++++e+s
  CDO69966.1 37 QNIVIVGGGIIGCTTAYYLASHPKFDrssttITLIEAS 74
                689******************99874222226666654 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.7e-05     0.034       1      30 [.      38      73 ..      38      82 .. 0.73
   2 ?   -1.1   0.0       1.4   2.8e+03      46      64 ..     212     230 ..     208     247 .. 0.61
   3 ?   -0.7   0.6       1.1   2.2e+03       2      20 ..     383     401 ..     382     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
                EEEEECSSHHHHHHHHHHHHTT......SEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg......kkVtvver 30
                ++v+vGgG ig+  A +la +         +t++e+
  CDO69966.1 38 NIVIVGGGIIGCTTAYYLASHPkfdrssTTITLIEA 73
                59****************765433333245566665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
                 HHHHHHHTTEEEECSEEEE CS
   Pyr_redox  46 lqeklekngievllntkve 64 
                 + e  +++g++++ +++++
  CDO69966.1 212 MLELAQERGVRFVQGKVTA 230
                 6777889999999887653 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
                 EEEECSSHHHHHHHHHHHH CS
   Pyr_redox   2 vvvvGgGyiglElAgalae 20 
                 vv vGgG i  E+A++++ 
  CDO69966.1 383 VVSVGGGPIVGEAATIAKG 401
                 678******9999998775 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.004       7.9       3      32 ..      39      73 ..      37      92 .. 0.76
   2 ?    3.8   0.0     0.015        31     199     262 ..     213     274 ..     208     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.004
  GMC_oxred_N  3 elveggGsagsvvAaRLsedps.....tsvlvlea 32
                  +++ggG++g+++A+ L+ +p+     t+++++ea
   CDO69966.1 39 IVIVGGGIIGCTTAYYLASHPKfdrssTTITLIEA 73
                 689***************99852222255666665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.015
  GMC_oxred_N 199 Lrpalerpnleiltg.akaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPql 262
                  L+ a er ++++++g ++a  i ++g ++ + GV++  +++  +  +  a ++++aaG + sP+l
   CDO69966.1 213 LELAQER-GVRFVQGkVTAVNINISGSSRHVSGVTYLPHSSD-SPETLPATHIILAAG-VWSPKL 274
                  5556677.8888864367777888999***************.777778899999998.567777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3290.46
//
Query:       CDO69967.1  [L=445]
Description: hypothetical protein BN946_scf184836.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-44  151.1   0.0    3.9e-44  150.6   0.0    1.2  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
      1e-36  126.0   0.0    1.8e-36  125.2   0.0    1.4  1  PSDC            Phophatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   4.3e-48   3.9e-44       2     199 ..     225     441 ..     224     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 4.3e-48
  PS_Dcarbxylase   2 neffvrklkdgaRpi..dddpgaivsPaDgrilqigeiee.gsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkv 93 
                       ff+r l+++aRpi  +d+++ i+sP++g++ +++ +++ +  +++Kg++ysl d+l++++ ++a +f++g +  i+Lsp+dyHr+h+Pv+g++
      CDO69967.1 225 DHFFTRALRPKARPIanPDSSHVITSPVEGTVYAHKIVSKvKDQFWLKGQPYSLVDMLHSENLNDAIRFSGGMVYQIFLSPFDYHRWHSPVDGEI 319
                     57*************75555556************999999999*************************************************** PP

  PS_Dcarbxylase  94 eerrhipGellsvnpsalkel..........rglftlneRvvlvie.w...kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf.GStvv 173
                     ++++ +pG+++ ++p +   +            l++  +R +++i+      G  a+++vG+  v++++++ + g ++kkGe+lG+F+f GS+++
      CDO69967.1 320 QRVEEVPGTYYAAAPDQGFPNadktalggsqAYLTAVATRMIIYIKaDdpnIGLLALIAVGMVEVSTCKFT-HSGGRVKKGEQLGMFHFgGSSFC 413
                     ************98888777767777888777788888********637878*******************.7********************** PP

  PS_Dcarbxylase 174 lvfeag..kfieslvekgqkvkmGeklg 199
                     l++ ++  + i +  ++++kvk+ ekl+
      CDO69967.1 414 LILNKQasERILNMKQVNDKVKVNEKLI 441
                     ****987777777788888******997 PP

>> PSDC  Phophatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0     2e-40   1.8e-36       2     140 .]      71     202 ..      70     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 2e-40
        PSDC   2 pvvqelkdliesdprlrmlfssmfeevpskkpykkdptgkkqirdyeellellnhilttapefsdkeeevglvgvPlnalLdwpmgtpsGyalFldpev 100
                 ++v++l++li++d++lr+lf++mf+++p     k++p  +  i+dy+++l++ln i+t+ p+f     +v+  g+P+n+lL wpm+t++G ++F d++v
  CDO69967.1  71 ESVNKLETLIKNDEKLRTLFQKMFDDIP----KKTEPPPQASITDYNTFLSYLNLIITKGPPF-----NVHANGLPINVLLLWPMATEAGRDAFSDHRV 160
                 5799************************....56789999***********************.....68889************************** PP

        PSDC 101 NkalkkiLneWgkfLkspa..SasvltteekgWfseealkel 140
                 N+ +k +L+eWg++L+++   S++v+tte+ gW+s+ea+k++
  CDO69967.1 161 NELIKGVLDEWGRYLSDTYanSRDVVTTEAGGWLSSEAMKRM 202
                 ***************987444******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3138.30
//
Query:       CDO69968.1  [L=135]
Description: hypothetical protein BN946_scf184836.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-12   47.2   1.7    2.3e-12   47.2   1.7    2.8  2  SRP9-21        Signal recognition particle 9 kDa protein (SRP
     0.0058   16.7   3.0     0.0074   16.3   3.0    1.2  1  MSA-2c         Merozoite surface antigen 2c
  ------ inclusion threshold ------
      0.053   14.1   0.1      0.098   13.3   0.1    1.3  1  Fe-S_assembly  Iron-sulphur cluster assembly


Domain annotation for each model (and alignments):
>> SRP9-21  Signal recognition particle 9 kDa protein (SRP9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   1.7   3.8e-16   2.3e-12       2      97 .]       5      76 ..       4      76 .. 0.94
   2 ?    0.3   0.9      0.16   9.7e+02      16      37 ..      78      99 ..      71     134 .. 0.52

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 3.8e-16
     SRP9-21  2 ktsqefleqsslLlearPsttrittkYsikakkkkkkkkkkkaksekkaskaspprgtltlKtydpvsGvclkYkTnkaaevsRlisalgrlgrsm 97
                +++qe++e+++ L+e++P+ttr+++k+++++                      + +g+l+lK++d++  +clk+kT+++  ++R+ +++ +l+++m
  CDO69968.1  5 SSWQEYQEAAEALYEKSPDTTRYCVKWRHSP----------------------DGQGKLVLKITDNT--TCLKFKTHSSVFLNRFDALNLSLMQKM 76
                79****************************2......................2589**********..*******************99999987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
     SRP9-21 16 earPsttrittkYsikakkkkk 37
                ++rP+++  t + s ++ + ++
  CDO69968.1 78 NKRPTQASTTASPSAPQIPVST 99
                4455554444444444222222 PP

>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.0   1.2e-06    0.0074     144     190 ..      71     119 ..      45     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-06
      MSA-2c 144 eLlkelqekkPsrtssaetP.aPs..daesaaaqPPeskpaqaPaPtsps 190
                  L++++q+k+P+++s +  P aP+   + saa+ P e+ +aqa +P  ps
  CDO69968.1  71 SLMQKMQNKRPTQASTTASPsAPQipVSTSAAQMPTEASSAQASTP-MPS 119
                 5899*******99999998875542234488888888788876555.222 PP

>> Fe-S_assembly  Iron-sulphur cluster assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.6e-05     0.098       2      26 ..       6      30 ..       6      33 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
  Fe-S_assembly  2 kWtdseeIAiaLyekypdvdpltvr 26
                   +W++++e A+aLyek pd+  + v+
     CDO69968.1  6 SWQEYQEAAEALYEKSPDTTRYCVK 30
                   5*****************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 912.37
//
Query:       CDO69969.1  [L=310]
Description: hypothetical protein BN946_scf184836.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-46  156.6   0.5    1.8e-15   56.6   0.0    3.3  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.15   12.5   0.9        1.7    9.2   0.2    2.6  2  Glug       The GLUG motif


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0     2e-19   1.8e-15       2      90 ..      10     100 ..       9     106 .. 0.83
   2 !   46.4   0.1     3e-16   2.7e-12       9      95 ..     118     198 ..     110     200 .. 0.88
   3 !   50.3   0.0   1.9e-17   1.7e-13       4      94 ..     205     302 ..     202     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.CCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqt.qkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 +l+++++++aG++ag+ + l  +Pldvv        +++ ++ ks++ ++  +k+i+keeG+  lyrGllp ll+ ap++a kf+++++  
  CDO69969.1  10 PLPFVANFAAGAIAGISEILTFYPLDVVSNLSVYcYGGHLETGKSKQgVIGSFKTIIKEEGFGRLYRGLLPPLLMEAPKRATKFAANDFWG 100
                 6899************************76655533333333333335**************************************99865 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 3e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++G++aga++++v+ P+++vK++   +++      +++ +dv+++++k+eGl+gly G+ +++ r    ++ +f++  +++ ll k
  CDO69969.1 118 IATGCAAGATESFVVVPFELVKIKSDKSST------FKGPMDVVSQVVKKEGLLGLYAGMEATMWRHLWWNGGYFGCIFQVRALLPK 198
                 679*******************97443333......3449*************************************9999988866 PP

  == domain 3  score: 50.3 bits;  conditional E-value: 1.9e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldv......vKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +++++l+aG ++g+v+t + tP+dv      vK r+q ++k      +++ +  +l +i++eeG ++ly+G++p++lr ap  ++ +++ e++ +++ 
  CDO69969.1 205 RLMNDLIAGTIGGLVGTAINTPFDVsdkkpvVKSRIQGASKVPGVVPKYNwTYPALVTIFREEGPAALYKGFVPKVLRLAPGGGVLLLVVEFTLNIFR 302
                 67899*******************55555559*****99999876655557*****************************************999886 PP

>> Glug  The GLUG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.079   7.1e+02       2      13 ..      16      27 ..      15      42 .. 0.75
   2 ?    9.2   0.2   0.00019       1.7       3      20 ..     213     231 ..     211     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.079
        Glug  2 atavGGLvGgag 13
                ++a+G ++G+++
  CDO69969.1 16 NFAAGAIAGISE 27
                8899*****986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00019
        Glug   3 tavGGLvGgaggg.gsien 20 
                 + +GGLvG+a ++ +++++
  CDO69969.1 213 GTIGGLVGTAINTpFDVSD 231
                 689*******998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2229.68
//
Query:       CDO69970.1  [L=323]
Description: hypothetical protein BN946_scf184836.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-13   50.2   0.7    6.8e-12   45.2   0.7    2.7  1  adh_short     short chain dehydrogenase
    4.5e-07   29.7   0.6    0.00015   21.4   0.6    2.8  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.7   7.6e-16   6.8e-12      14     183 ..      40     244 ..      39     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 7.6e-16
                 HHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..............TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S........... CS
   adh_short  14 raiakelakeGakvvvvdrseekleevakelkee..............gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi........... 87 
                 r++a ++a++Ga++ +v+r+e kl ++a+e++++               +++l+ ++Dvt  +++  l  k+ + + + d Lv +AG+           
  CDO69970.1  40 RELALQYASKGARLCLVGRRETKLVQLAEECRSLcqsnpmakaamgdgDDRVLVETADVTVVDDIISLRTKILEAWRGFDTLVVCAGVgtlkpclelag 138
                 7899**************************998765433322223222234888899*******************************99999999999 PP

                 ....S--SSGGGCSHHHHHHHHHH.......HTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEE CS
   adh_short  88 ....tgsgpfselseeewerviev.......Nltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirv 174
                     +  ++ ++++++ +e v+e+       N+ g++ ++ +++p +   + s +I  +s  a+  p +  + Y+AsK a   l ++la e     +  
  CDO69970.1 139 vessSDGTSLHRVENAGIEHVVEIanralgpNYLGPLIAAVTFIPLLTsTSASPSIMLMSTLAAVIPAPTASLYCASKSASLLLYQTLAIENPA--VAF 235
                 9887556666666666688885555555555***************99788899***********************************98665..888 PP

                 EEEEESSBS CS
   adh_short 175 navaPGlvd 183
                 +++ P  v+
  CDO69970.1 236 TCILPSTVR 244
                 888888775 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.6   1.6e-08   0.00015      10     159 ..      42     230 ..      39     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.6e-08
                   HHHHHHHTT-EEEEEESSGGH....HHHHHHHHHHTT..SEE...........EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG....... CS
  adh_short_C2  10 iAkalaeeGaevvltdlneea....kkrveelaeelg..aev...........lecDVtdeeqvealveevvekfgklDilvnnagiapk....... 82 
                   +A ++a++Ga+++l+ ++e +    ++++++l ++ +  + +             +DVt  +++ +l  ++ e + ++D lv +ag+ +        
    CDO69970.1  42 LALQYASKGARLCLVGRRETKlvqlAEECRSLCQSNPmaK-AamgdgddrvlvETADVTVVDDIISLRTKILEAWRGFDTLVVCAGVGTLkpclela 137
                   6667777777777777766664222233333333222210.112233333355789******************************99877887777 PP

                   ......CSS-GGGH-HHHHHHHHHH.......HTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHH CS
  adh_short_C2  83 ......lkgpfletsreefdraldv.......nlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvel 159
                           ++++ ++ +++++++++       n  + +  a  ++pl++++    si+ +s ++a +  p  + y+a+K a   l ++lA e 
    CDO69970.1 138 gvesssDGTSLHRVENAGIEHVVEIanralgpNYLGPLIAAVTFIPLLTSTsasPSIMLMSTLAAVIPAPTASLYCASKSASLLLYQTLAIEN 230
                   76665533455556666666665553333333788999999999**8877767789**********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2291.78
//
Query:       CDO69971.1  [L=281]
Description: hypothetical protein BN946_scf184836.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-39  134.7   0.0    2.4e-39  134.2   0.0    1.3  1  UQ_con      Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   1.3e-43   2.4e-39       1     137 [.      10     144 ..      10     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 1.3e-43
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 rl++el+el++++p+gi++ + +d n+   +++i+gpe+tpY+gg+Fk++++f e++P  pPk+ f tkifHPnv+++Ge+c++ Lk++ W++++ + +
  CDO69971.1  10 RLMRELSELRTNPPEGIRVVTNED-NMLDVTGIIEGPEGTPYAGGYFKVRFQFTEEFPAAPPKCWFSTKIFHPNVSATGEICVNTLKKD-WKSSYGIGH 106
                 89*****************99997.**************************************************************55.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvk 137
                 +ll++  Ll  pnpes+l++ea+kll +d + y ++++
  CDO69971.1 107 ILLTVKCLLIYPNPESALDEEAGKLLLEDYNSYCERAR 144
                 **********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.53
# Mc/sec: 1595.05
//
Query:       CDO69972.1  [L=315]
Description: hypothetical protein BN946_scf184836.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2171.01
//
Query:       CDO69973.1  [L=522]
Description: hypothetical protein BN946_scf184836.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-14   54.0   0.0    5.6e-14   52.7   0.0    1.6  2  OTU            OTU-like cysteine protease
     0.0075   15.8   0.0        1.8    7.9   0.0    2.2  2  Peptidase_C65  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.3   1.2e+04       7      32 ..      42      67 ..      39      68 .. 0.82
   2 !   52.7   0.0   6.2e-18   5.6e-14       2      87 ..      77     159 ..      76     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
                HHHHHHHCCCSS.SHCCHHHHHHHHH CS
         OTU  7 LlravsqqlwgvsdelrkakvseLre 32
                +l ++ q ++ + +e++++ + +Lr+
  CDO69973.1 42 MLTSANQPIATNPEENSQMLDAQLRQ 67
                78899999998888999999999997 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 6.2e-18
                 -SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH..HHHHTTSTTHHHHHHHHHHHHHHCTS-EEEET CS
         OTU   2 gDGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg..ylkeiektaawggeleifalahiLrrpIiVlk 87 
                 gDGnCL+ra s+ql+     ++ +++ +Lr+  ++ ++ h+e +++f+e+e      l+ ++++a +gg+le+ a ah+ +r+++V++
  CDO69973.1  77 GDGNCLFRALSDQLY-----GTPSHHLKLRQDICDWIEAHKERYAPFVEDERGLehHLSCMRQPATYGGHLELSAFAHMTKRNVKVIQ 159
                 9*************9.....8889999************************66688******************************65 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0011       9.5      46      56 ..      76      86 ..      70      91 .. 0.87
   2 !    7.9   0.0    0.0002       1.8     148     202 ..     106     159 ..      97     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0011
                   --SSTHHHHHH CS
  Peptidase_C65 46 rgDGnCfyRaf 56
                    gDGnC++Ra+
     CDO69973.1 76 IGDGNCLFRAL 86
                   69********7 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0002
                    HHHHHTHHHHGGGS-TT--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEEE CS
  Peptidase_C65 148 aelkthadeyepFldelstveeFceqevepvnkEaDnvqitaLaealgvkvrVey 202
                     ++++h++ y pF++++  +e+ ++   ++ +    ++++ a+a++++ +v+V+ 
     CDO69973.1 106 DWIEAHKERYAPFVEDERGLEHHLSCM-RQPATYGGHLELSAFAHMTKRNVKVIQ 159
                    589*************99999988776.999999*************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 3650.11
//
Query:       CDO69974.1  [L=129]
Description: hypothetical protein BN946_scf184836.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.1   0.0    1.2e-17   64.0   0.0    1.0  1  adh_short        short chain dehydrogenase
      5e-14   52.4   0.0    5.6e-14   52.3   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.8e-07   29.9   0.1    1.1e-06   28.7   0.1    1.5  1  KR               KR domain
    0.00044   19.8   0.0    0.00051   19.6   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0038   17.1   0.2     0.0053   16.7   0.2    1.2  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.023   13.8   0.0    1.5  2  RmlD_sub_bind    RmlD substrate binding domain
      0.021   14.3   0.0      0.029   13.8   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.11   13.0   0.0       0.15   12.6   0.0    1.4  1  NAD_binding_7    Putative NAD(P)-binding
       0.13   12.0   0.1       0.22   11.3   0.1    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   6.2e-21   1.2e-17       2     117 ..       9     128 ..       8     129 .] 0.92

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6.2e-21
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHH...HHSSESEEEE---S..S--SSGG CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavk...klgkldvLvnNAGi..tgsgpfs 94 
                 +vl+tGas+GIG+a+++++++ Ga+v++ ++ + ++l  ++ e+++  a++ a+q+D+t +++v +l+  a++    +g++ v+  N +   ++++p++
  CDO69974.1   9 HVLITGASGGIGLATVQKFLQVGARVTAhYNTKLAPLDPLLGEFGR--ARIRALQADLTREADVARLFTSAAEgpeAFGPVQVVAINHAYyeARDVPVA 105
                 69**************************999999999999999998..58******************9998622267******8888888999***** PP

                 GCSHHHHHHHHHHHTHHHHHHHH CS
   adh_short  95 elseeewervievNltgvflltr 117
                 ++s e+we+++++Nlt+ fl++r
  CDO69974.1 106 RMSLEQWESTFSTNLTSSFLVAR 128
                 *******************9987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   2.8e-17   5.6e-14       1     111 [.      14     128 ..      14     129 .] 0.92

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 2.8e-17
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHH...HHSSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtdeeqvealveevve...kfgklDilvnnagiapklkgpflets 91 
                   Ga  gIG a+++++ + Ga+v +++  + a   +++l  e+g++ +  l++D t+e++v++l+  ++e    fg + ++  n ++ ++ + p++ +s
    CDO69974.1  14 GASGGIGLATVQKFLQVGARVTAHYNTKLA--PLDPLLGEFGRArIraLQADLTREADVARLFTSAAEgpeAFGPVQVVAINHAYYEARDVPVARMS 108
                   8999*********************99988..89********666566***************9998533379**************99******** PP

                   HHHHHHHHHHHTHHHHHHHH CS
  adh_short_C2  92 reefdraldvnlyslfllak 111
                    e+++ ++++nl+s fl+a+
    CDO69974.1 109 LEQWESTFSTNLTSSFLVAR 128
                   *****************998 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   5.6e-10   1.1e-06       3     113 ..      10     120 ..       9     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.6e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS.....S---EEEE-------- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee.....ppikGvihaAgvlrdk 95 
                 +litG+ Gg+Gl++++  ++ gar  +    +    +  + l+    +   a++++++aD++ +++v++l++++ +        ++  + ha   +rd 
  CDO69974.1  10 VLITGASGGIGLATVQKFLQVGARVTAHYNTK--LAPL-DPLLG---EFgRARIRALQADLTREADVARLFTSAAEGPeafgpVQVVAINHAYYEARDV 102
                 69*********************977766666..2222.22333...33358******************9988754334544456688899999**** PP

                 -TTT--HHHHHHHHTTTT CS
          KR  96 lleemtaedleqvlapKv 113
                 ++++m+ e++e+ ++  +
  CDO69974.1 103 PVARMSLEQWESTFSTNL 120
                 ***********9998655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.6e-07   0.00051       1      62 [.      10      76 ..      10      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.6e-07
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfke 62
                +l+tGa+G iG a+v+++l+ g +v++  +     + a l+ l         +  ++dlt +++++rlf +
  CDO69974.1 10 VLITGASGGIGLATVQKFLQVGARVTAHYNT----KLAPLDPLlgefgrariRALQADLTREADVARLFTS 76
                79********************999999999....44444444677799*******************986 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   2.7e-06    0.0053       1      60 [.      14      76 ..      14      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-06
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTH.HHCH....HHHCTTTCEEEE--TT-CCHHHHHHTT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnp.ekla....eleaeeglevvegdvtdvedlaealkg 60
                    GA+G++G + v++ l+ g  +vta   ++ + l+    e+  +++++++++d+t ++d+a+ ++ 
      CDO69974.1 14 GASGGIGLATVQKFLQVG-ARVTAHYNTKlAPLDpllgEF-GRARIRALQADLTREADVARLFTS 76
                    9****************5.9****9877434554333355.479****************99875 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.023       2      65 ..       9     101 ..       8     111 .. 0.82
   2 ?   -0.2   0.0      0.21   4.3e+02     244     272 ..      93     121 ..      76     123 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHH.......HHH--S..EEEE------HH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaell.......keakpd..vvvnaAAytavD 65 
                    ++l+tGa+G +G + ++++ + g+ v+a  ++                    ++dlt+++ va+l+       +++ p   v +n A y a D
     CDO69974.1   9 HVLITGASGGIGLATVQKFLQVGARVTAHYNTklapldpllgefgrariralQADLTREADVARLFtsaaegpEAFGPVqvVAINHAYYEARD 101
                    69**************************966669*******************************9555555544444422335666666655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
                    CCS--SS---SBE-B--HHHHHCCT---- CS
  RmlD_sub_bind 244 aeyptpAkRPanSvLdtekleatfgiklr 272
                    +++  +A+    +++++e++e+tf ++l+
     CDO69974.1  93 NHAYYEARDVPVARMSLEQWESTFSTNLT 121
                    44445677777899999999999988775 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-05     0.029       1      73 [.      11      76 ..      11      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73
                   LiTG +G iG  +++++l+ g +v+     +++++++ ++ l  +     + +++  ++Dlt ++ + rl+ +
     CDO69974.1 11 LITGASGGIGLATVQKFLQVGARVTA----HYNTKLAPLDPLLGEF---GRARIRALQADLTREADVARLFTS 76
                   9***********************76....5666778999999743...4679***************99976 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.3e-05      0.15       5      55 ..       5      64 ..       3     117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
  NAD_binding_7  5 lkgkkvlvvGg.GevAarkvrklleagakvtvvapevkeele........elvklaeeel 55
                   l++ +vl+ G+ G +++  v+k+l+ ga+vt   ++  + l+         ++++ + +l
     CDO69974.1  5 LQNVHVLITGAsGGIGLATVQKFLQVGARVTAHYNTKLAPLDpllgefgrARIRALQADL 64
                   6889******659******************85555322223444444445555555555 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00011      0.22      42      56 ..       9      23 ..       4      40 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                     EEEEESTSSHHHHHH CS
  Eno-Rase_NADH_b 42 kvLviGaStGYGLAs 56
                     +vL+ GaS G GLA+
       CDO69974.1  9 HVLITGASGGIGLAT 23
                     79************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1004.64
//
Query:       CDO69975.1  [L=275]
Description: hypothetical protein BN946_scf184836.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-37  126.9   0.2    1.1e-36  126.6   0.2    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.6e-33  115.2   0.1      5e-33  114.2   0.0    1.4  2  adh_short       short chain dehydrogenase
    1.3e-09   38.2   0.6    3.7e-09   36.7   0.6    1.7  1  KR              KR domain
     0.0018   17.8   0.0      0.003   17.0   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0034   16.8   0.0     0.0047   16.3   0.0    1.1  1  DUF1776         Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
      0.013   15.4   0.2      0.026   14.4   0.2    1.4  1  NAD_binding_10  NAD(P)H-binding
      0.021   14.2   0.1       0.14   11.5   0.0    1.9  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      0.076   12.1   0.0       0.17   11.0   0.0    1.5  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.2   4.8e-40   1.1e-36       1     233 [.      14     261 ..      14     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 4.8e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHH...HHSSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtdeeqvealveevve...kfgklDilvnnagiapklkgpflets 91 
                   Ga  gIG a+++++ + Ga+v +++  + a   +++l  e+g++ +  l++D t+e++v++l+  ++e    fg + ++  n ++ ++ + p++ +s
    CDO69975.1  14 GASGGIGLATVQKFLQVGARVTAHYNTKLA--PLDPLLGEFGRArIraLQADLTREADVARLFTSAAEgpeAFGPVQVVAINHAYYEARDVPVARMS 108
                   8999*********************99988..89********666566***************9998533379**************99******** PP

                   HHHHHHHHHHHTHHHHHHHHHHHH...HCTSC......CEEEEEEEGGGTSBSTTTTHHHHHHHHHH.HHHHHH...HHHHGGGTEEEEEEEE--BH CS
  adh_short_C2  92 reefdraldvnlyslfllakaalp...lmkeg......gsivnlssvgaervvpnynaygaaKaale.altryl...AvelgpkgiRvNavspgpik 175
                    e+++ ++++nl+s fl+a++ l+   ++  +      ++i+ + s++++ + ++++ y+a+K a+  +l+ +l    v+++p + RvNa++pg+++
    CDO69975.1 109 LEQWESTFSTNLTSSFLVARQYLRgleAA--TddakekAAIILIGSTAGKYGEAGHADYSATKSAMMyGLCLTLkneIVSIAP-RGRVNAIAPGWVR 202
                   **********************9975422..2345667*************************98642555555111566677.55*********** PP

                   CTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT.--SEEEEESTTG CS
  adh_short_C2 176 TlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasy.itGqtlvvDgGl 233
                   T++a++  + +++  ++ a +pl++++tpe++a  ++++ s+  s+ itGq+l++ gG+
    CDO69975.1 203 TPMAEESLKDPNVVYRALATTPLKKVATPEDIAGQIVVMSSPSLSGhITGQVLMIEGGM 261
                   ******999********************************965544***********8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   2.2e-36     5e-33       2     193 ..       9     212 ..       8     214 .. 0.92
   2 ?   -2.7   0.0       1.5   3.3e+03     126     137 ..     233     244 ..     222     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 2.2e-36
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHH...HHSSESEEEE---S..S--SSGG CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavk...klgkldvLvnNAGi..tgsgpfs 94 
                 +vl+tGas+GIG+a+++++++ Ga+v++ ++ + ++l  ++ e+++  a++ a+q+D+t +++v +l+  a++    +g++ v+  N +   ++++p++
  CDO69975.1   9 HVLITGASGGIGLATVQKFLQVGARVTAhYNTKLAPLDPLLGEFGR--ARIRALQADLTREADVARLFTSAAEgpeAFGPVQVVAINHAYyeARDVPVA 105
                 69**************************999999999999999998..58******************9998622267******8888888999***** PP

                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.....HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHH.HHHHHHHHHHGGGT..EEEEEEEESSBSSH CS
   adh_short  95 elseeewervievNltgvflltravlpaml.....kqssGrIvnvsSvagkvpvagvaaYsAsKaava.gltrslakelaptg..irvnavaPGlvdTd 185
                 ++s e+we+++++Nlt+ fl++r+ l+ +      ++++++I+ ++S+agk++ ag a YsA+K a+  gl  +l++e+ +     rvna+aPG v+T+
  CDO69975.1 106 RMSLEQWESTFSTNLTSSFLVARQYLRGLEaatddAKEKAAIILIGSTAGKYGEAGHADYSATKSAMMyGLCLTLKNEIVSIAprGRVNAIAPGWVRTP 204
                 ****************************999999999****************************97549********87655557************* PP

                 HHHHHCTH CS
   adh_short 186 makelrek 193
                 ma+e+ ++
  CDO69975.1 205 MAEESLKD 212
                 **998665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 CTTEEEEEEEEG CS
   adh_short 126 qssGrIvnvsSv 137
                   +G+Iv +sS 
  CDO69975.1 233 DIAGQIVVMSSP 244
                 6689*****995 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.6   1.7e-12   3.7e-09       3     155 ..      10     171 ..       9     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.7e-12
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS.....S---EEEE-------- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee.....ppikGvihaAgvlrdk 95 
                 +litG+ Gg+Gl++++  ++ gar  +    +    +  + l+    +   a++++++aD++ +++v++l++++ +        ++  + ha   +rd 
  CDO69975.1  10 VLITGASGGIGLATVQKFLQVGARVTAHYNTK--LAPL-DPLLG---EFgRARIRALQADLTREADVARLFTSAAEGPeafgpVQVVAINHAYYEARDV 102
                 69*********************977766666..2222.22333...33358******************998875433454445668889999***** PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT.........S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled.........esldffvlfSSiagllgsagqanYaaaNaf 155
                 ++++m+ e++e+ ++  ++ +  + +   +         ++   ++l+ S ag +g+ag+a+Y+a+ + 
  CDO69975.1 103 PVARMSLEQWESTFSTNLTSSFLVARQYLRgleaatddaKEKAAIILIGSTAGKYGEAGHADYSATKSA 171
                 *****************999866544333223333334888889*********************8765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.4e-06     0.003       1      62 [.      10      76 ..      10      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfke 62
                +l+tGa+G iG a+v+++l+ g +v++  +     + a l+ l         +  ++dlt +++++rlf +
  CDO69975.1 10 VLITGASGGIGLATVQKFLQVGARVTAHYNT----KLAPLDPLlgefgrariRALQADLTREADVARLFTS 76
                79********************999999999....44444444677799**9****************986 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.1e-06    0.0047     106     185 ..     102     184 ..      88     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
     DUF1776 106 gpietiplsswaselnerllspiltlqallplltsra...kqkakiivvnpsissslnlpfhapEalvssalsalfevLkrel 185
                  p++ ++l++w+s++ ++l s++l+  + l  l++++   k+ka ii++     +  ++ ++   a+ s  +  l  +Lk+e+
  CDO69975.1 102 VPVARMSLEQWESTFSTNLTSSFLVARQYLRGLEAATddaKEKAAIILIGSTAGKYGEAGHADYSATKSAMMYGLCLTLKNEI 184
                 59*******************************99878878888888887666666666666667777777888999999886 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.1e-05     0.026       1      60 [.      14      76 ..      14      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTH.HHCH....HHHCTTTCEEEE--TT-CCHHHHHHTT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnp.ekla....eleaeeglevvegdvtdvedlaealkg 60
                    GA+G++G + v++ l+ g  +vta   ++ + l+    e+  +++++++++d+t ++d+a+ ++ 
      CDO69975.1 14 GASGGIGLATVQKFLQVG-ARVTAHYNTKlAPLDpllgEF-GRARIRALQADLTREADVARLFTS 76
                    9****************5.9****9877434554333355.479****************99875 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.3e-05      0.14       1      73 [.      11      76 ..      11      79 .. 0.87
   2 ?    0.4   0.0      0.16   3.5e+02     108     140 ..     132     164 ..     104     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73
                   LiTG +G iG  +++++l+ g +v+     +++++++ ++ l  +     + +++  ++Dlt ++ + rl+ +
     CDO69975.1 11 LITGASGGIGLATVQKFLQVGARVTA----HYNTKLAPLDPLLGEF---GRARIRALQADLTREADVARLFTS 76
                   9***********************76....5666778999999743...4679**************999976 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
                    HHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS CS
  GDP_Man_Dehyd 108 rLLeairalglekkvrfyqaStsEvYGkvqevp 140
                    r Lea+ +   ek + +++ St+  YG++ ++ 
     CDO69975.1 132 RGLEAATDDAKEKAAIILIGSTAGKYGEAGHAD 164
                    448888888888999999999999999988765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.5e-05      0.17       2      63 ..       9      99 ..       8     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.5e-05
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................T--TTSHHHHHHHH.......HHH--S..EEEE------ CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre....................eldltdaeavaell.......keakpd..vvvnaAAyta 63
                   ++l+tGa+G +G + ++++ + g+ v+a  ++                    ++dlt+++ va+l+       +++ p   v +n A y a
     CDO69975.1  9 HVLITGASGGIGLATVQKFLQVGARVTAHYNTklapldpllgefgrariralQADLTREADVARLFtsaaegpEAFGPVqvVAINHAYYEA 99
                   69**************************966669******************************995554444444444222245666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1996.29
//
Query:       CDO69976.1  [L=819]
Description: hypothetical protein BN946_scf184836.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-69  234.0   0.0    2.6e-69  233.6   0.0    1.2  1  Pkinase         Protein kinase domain
      4e-38  131.2   0.0    6.4e-38  130.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-06   28.2   0.0    2.1e-06   27.3   0.0    1.3  1  Kinase-like     Kinase-like
      0.004   16.1   0.4     0.0066   15.4   0.4    1.2  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.025   14.2   0.1      0.048   13.3   0.1    1.4  1  RIO1            RIO1 family
      0.044   13.7   0.1      0.092   12.6   0.1    1.5  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.0   8.6e-73   2.6e-69       3     264 .]      93     353 ..      91     353 .. 0.94

  Alignments for each domain:
  == domain 1  score: 233.6 bits;  conditional E-value: 8.6e-73
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                  l++lGeG+fGkV  +++ + g++vAvK i++ +++++ + +kv rEi++l++lkhpnivrly+v+e+++++ ++ley++ggel+d++ +++ l e++a
  CDO69976.1  93 LLQTLGEGEFGKVKLGLHMQWGEEVAVKLIRRGNIDSSVRmSKVEREIEVLRTLKHPNIVRLYDVIETDKYIGIILEYASGGELFDHILAHRYLREKDA 191
                 5799*******************************9999889********************************************************* PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHHHHHHHHHSS- CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvl.keney.skkvDvWslGvilyelltgkp 195
                  k+++q+++g+ y+H+k+i+HrDlK eN+L+d+++++ itDFG+a+++e++ +  +++ +g++ Y APE++ ++  y +++vD+Ws+Gvily +l+g  
  CDO69976.1 192 CKLFSQLISGVWYIHQKKIVHRDLKLENLLLDRHRNVIITDFGFANRFEHRADdlMQTSCGSPCYAAPELViSDGLYvGSAVDIWSCGVILYAMLAGYL 290
                 **************************************************9999****************98555556********************* PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 pf ++      + + d++  ++k +  ++  l  ++ is++a+dll+ +l  dp +R     +++h++l
  CDO69976.1 291 PFDDDPA----NPDGDNINLLYKYI--VNTPLSFPDYISDDARDLLSIMLVPDPARRADLPTIMAHRWL 353
                 ***4444....44777766666654..66789999*********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   2.1e-41   6.4e-38       4     256 ..      94     348 ..      92     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 2.1e-41
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                   ++lGeG+fGkV  g       +  ++VavK +++++ +++  ++++ +e++++++lkhpniv+l+ v+  ++ + i++ey++gG+L +++ ++  + 
   CDO69976.1  94 LQTLGEGEFGKVKLGLHM----QWGEEVAVKLIRRGNIDSSvrMSKVEREIEVLRTLKHPNIVRLYDVIETDKYIGIILEYASGGELFDHILAH--RY 185
                  689************999....8999*******9877666544788999*******************************************99..9* PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvll 195
                  l+ kd +++  q+ +G+ y+++kk+vHrdl   N Ll++++ v i+DfG a++ e++ +  +++++  p  + apE + +    + s+ D+Ws Gv+l
   CDO69976.1 186 LREKDACKLFSQLISGVWYIHQKKIVHRDLKLENLLLDRHRNVIITDFGFANRFEHRADDLMQTSCGSP-CYAAPELVISDGlyVGSAVDIWSCGVIL 282
                  ******************************************************988888888888777.69****7655543456888********* PP

                  HHHHTTSSGT......TTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 196 wEiftlgesp......ypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  + ++  g  p       p+ +n ++l k+  ++ l+ p++++++  +l++  +  dp++R+++ +++
   CDO69976.1 283 YAMLA-GYLPfdddpaNPDGDNINLLYKYIVNTPLSFPDYISDDARDLLSIMLVPDPARRADLPTIM 348
                  ***99.9999555444555667778888888999999999999999999999999999999887775 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.9e-10   2.1e-06     140     253 ..     187     295 ..     172     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6.9e-10
  Kinase-like 140 kletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve...kgfaPpEllgsrggytrknktkmthklda 233
                  +++++++l    qli  + ++++k +vh +++ +nllld++  +++++f+   r  +++    ++      +a pEl+ s g y       +  ++d 
   CDO69976.1 187 REKDACKLFS--QLISGVWYIHQKKIVHRDLKLENLLLDRHRNVIITDFGFANRFEHRADDlMQTScgsPCYAAPELVISDGLY-------VGSAVDI 275
                  4556666655..99************************************999988887632222246689*********7775.......5589*** PP

  Kinase-like 234 WqlGlviyriwclklPltla 253
                  W  G+  y + + +lP++ +
   CDO69976.1 276 WSCGVILYAMLAGYLPFDDD 295
                  *****************986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   2.2e-06    0.0066     186     259 ..     166     242 ..     135     252 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-06
  Haspin_kinase 186 lvlllkdkGtdLeev...klkswkqalsifwqivk.iLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls.Rless 259
                    ++l+   +G+  +++   +    k+a ++f q ++ + y+  +  +  HRdL+l+n L+d++ nv++ d+  + R+e++
     CDO69976.1 166 IILEYASGGELFDHIlahRYLREKDACKLFSQLISgVWYIHQK--KIVHRDLKLENLLLDRHRNVIITDFGFAnRFEHR 242
                    5555555666555554333334456667777755414444444..457**********************876466654 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.6e-05     0.048      53     157 ..     134     241 ..     115     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHHHTT.--S--EEEEETTE.EEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE- CS
        RIO1  53 lwaekEfrnLkrleeag.vpvPkpielkrhv.lvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviI 147
                   +e+E++ L+ l++ + v+  ++ie  + + +++e+ +  ++    l +   +e++a +l+ ++++ +  +  + ++vH DL   N+l+d+  +v+i 
  CDO69976.1 134 SKVEREIEVLRTLKHPNiVRLYDVIETDKYIgIILEYASGGELFDHILAHRYlREKDACKLFSQLISGVWYIH-QKKIVHRDLKLENLLLDRHrNVIIT 231
                 457999999999998887899999999998879999999333333334443335889999*******888776.99*****************888888 PP

                 -GTTEEETTS CS
        RIO1 148 DvsQaveldh 157
                 D++ a   +h
  CDO69976.1 232 DFGFANRFEH 241
                 9987766666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.1e-05     0.092     167     196 ..     209     236 ..     175     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
                 EEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfeda 196
                  ++H+Dl++ Nll+d + + +  + Df++a
  CDO69976.1 209 KIVHRDLKLENLLLDRHRNVI--ITDFGFA 236
                 589************888888..99**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 5306.95
//
Query:       CDO69977.1  [L=316]
Description: hypothetical protein BN946_scf184836.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   23.8   0.0    5.5e-05   22.9   0.0    1.4  1  KA1       Kinase associated domain 1


Domain annotation for each model (and alignments):
>> KA1  Kinase associated domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     3e-09   5.5e-05       2      39 ..     270     308 ..     269     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3e-09
         KA1   2 vvkFEievcKlpels.lygvrfkRlsGdtwqYkrlasqi 39 
                 +v+F +e+ +l +l+  y ++++Rl+G+  +Yk l++ +
  CDO69977.1 270 EVRFSVELTRLDRLDdTYSLDIRRLKGNLRSYKFLYDTL 308
                 79*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2254.84
//
Query:       CDO69978.1  [L=458]
Description: hypothetical protein BN946_scf184836.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-47  161.6   0.0      4e-47  161.1   0.0    1.1  1  CNH       CNH domain
  ------ inclusion threshold ------
      0.064   13.8   0.7       0.68   10.5   0.7    2.5  1  PH        PH domain


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.0   4.4e-51     4e-47       5     273 ..     102     377 ..      98     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 4.4e-51
         CNH   5 tggqrlllGteeGlyllnlsdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenltqklpetk.gchffairngy 102
                 +g++  ++G e+G+++   +++++ ++++ l  vtqla l e+ ll++l+dk Ly++ ++++ ++ ++ ++ ++    + q+++  +  +hff+  +g+
  CDO69978.1 102 DGRRFYAVGSEDGVWIGAPQQPNSIQRVIPLRMVTQLAFLVEYGLLVVLADKILYAIGIESVVPSLTR-DADRPSDVFAFQRISNPHtPIHFFS--VGR 197
                 6777889***********988888888888877********************************944.4444444447778877651688888..*** PP

         CNH 103 skekfLvvavks.....kivllewneplkkfk....kklrefqvpaevfsisvlkpklcvgvakgFelvnldegaaeslldpednsldfaarkenlkpl 192
                   +++L++++k+      + +le+  p+ ++     k  ++f +p+  +++ +lk+k+c+ + +gFe+++l++ ++ +++  ed + ++ +r    kp+
  CDO69978.1 198 LAGRTLIISKKRkgvdsVFRILEVFLPAGEQGppniKVSKDFFLPSDTYDLLFLKTKVCILCPRGFEIMDLSDFSSATIPLEEDLQ-QMGKRPGAHKPI 295
                 ****************99999999999888879999999*********************************99999998777766.7999******** PP

         CNH 193 aviqisedefLlcydefavyvdlqGrrsr.dseleWegkPesvaclepyllafhknfieirsvetgelvqeisgkklrflls 273
                 a+ +i edef lcy+ef+ yvd+ G +sr +  +eWeg++ + a   py+l fh+ fie+r++e+g+l q++ g+++r+l +
  CDO69978.1 296 AMLRIREDEFVLCYEEFGLYVDKRGAPSRsPPVIEWEGVAAHAAWHAPYVLLFHDSFIEVRHIESGRLAQIMLGRDVRCLWD 377
                 *******************************************************************************966 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   7.6e-05      0.68      17      37 ..      10      39 ..       2      78 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.6e-05
                SEEEEEEEEETTEEEEESST.........T CS
          PH 17 swkkrwfvLkdsellyyknd.........k 37
                +wk+ w+vL+d+ l++ k +         +
  CDO69978.1 10 GWKELWVVLFDNYLVMTKRKgsgpstntvE 39
                8******************97777655542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3142.11
//
Query:       CDO69979.1  [L=476]
Description: hypothetical protein BN946_scf184836.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-06   28.7   0.4    2.4e-06   27.6   0.4    1.5  1  Integrase_H2C2  Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   1.3e-10   2.4e-06       8      53 ..     170     214 ..     165     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-10
  Integrase_H2C2   8 eilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCq 53 
                      il  +H+  gH G+++t + +r++y W   ++ v  ++++C+tC 
      CDO69979.1 170 PILCFHHEVIGHGGRDRTAAEVRKHYTWIP-KELVAGFIRTCPTCI 214
                     588889999*******************98.9*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3344.33
//
Query:       CDO69980.1  [L=726]
Description: Glycoside Hydrolase Family 28 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-62  207.1   2.6    8.8e-21   73.6   0.3    3.3  3  Mito_carr       Mitochondrial carrier protein
    1.6e-29  103.0   0.1    1.1e-28  100.2   0.1    2.0  1  Glyco_hydro_28  Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.8e-23   3.4e-19       3      95 ..     443     529 ..     441     531 .. 0.95
   2 !   63.5   0.0   1.4e-21   1.3e-17       3      95 ..     534     626 ..     532     628 .. 0.92
   3 !   73.6   0.3   9.8e-25   8.8e-21       2      93 ..     633     721 ..     632     724 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 3.8e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  ++l++l+aG +agav++++t+P+++vKtr q ++k+++       l+++k++++++G+ gly+G+++ ++++a++++++fv+y+ +k+ l +
  CDO69980.1 443 EKPLHSLIAGTTAGAVEAFITYPTEYVKTRSQFSGKRES------PLNIIKSTLQTKGVIGLYSGCMALVIGNAVKAGVRFVSYDHFKHALAD 529
                 67899********************************87......69******************************************9875 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 1.4e-21
                 HHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagav.atlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +s+ ++llaG+ ag++ a +++tP +++Kt+l  ++ks + +  +++++    i++eeGlrg yrGl p ++r+  +sa++f++y tlk+l++ 
  CDO69980.1 534 VSPPRSLLAGLGAGMMeALFAVTPSETIKTKLIDDAKSPNPRF-RGLIHGTACIVREEGLRGIYRGLFPVMMRQGANSAVRFTTYTTLKQLVQS 626
                 78899***********67789*****************99866.55********************************************9876 PP

  == domain 3  score: 73.6 bits;  conditional E-value: 9.8e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++s + ++ +G++ag+v++  t+Pldv+Ktr+q+ + ++++++    +++ ++i+ eeG++ ++ G +p+l r + + ++ f++ye +++l+
  CDO69980.1 633 PVSSFVTFGIGAVAGLVTVYTTMPLDVIKTRMQSLEARQAYKN---SFHCAYRIFTEEGILRFWTGTTPRLARLVMSGGIVFTVYENVIKLI 721
                 567889999*****************************99977...8*****************************************9997 PP

>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.1   1.3e-32   1.1e-28      28     321 ..     108     420 ..      92     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 1.3e-32
  Glyco_hydro_28  28 ksgttvtlegtttakvkekngkddivisgekitvlgisGkgtidGqGqawwdgkgkkk.kegkkkpkflvikkvknskiknlniknspvfhfsve 121
                     k++ +  l++++t++v   +++   ++   +  v+ ++G g i+G+Gq ww   g++  ++g   p +l++++v+ + ik+ +i   p+ +  v 
      CDO69980.1 108 KADPEYWLNANNTYRVIFIQNQASWFVLTGHDFVVDAHGAGGINGNGQTWWSFYGNRSrSDGDGRPVSLTLSNVTRAVIKDFRIEAQPFWCNAVA 202
                     4666677777777777777777434444444457889******************988899********************************** PP

  Glyco_hydro_28 122 sgkdltisditidasagd.........hNtDgidvgsskgvtisntnikngDDciainsgsknisitnvtcggGHGlSiGSvggrsd..ntVknv 205
                     ++kd++ + +  +a ++d         +NtDgi+  +s+ v +               + + ni ++++tc gG G+ +GS+g++ d  + V+n+
      CDO69980.1 203 DSKDVVYDGMYCNATNQDplyagqnvvPNTDGINTYRSDRVSLLRF-----------DNST-NIFAKDITCRGGNGIAVGSLGQYADlpDIVDNL 285
                     *****************************************99864...........2334.9************************9999**** PP

  Glyco_hydro_28 206 tvkdskvk........nsenGvRIKtik............gatgtvsnvkyeniklknvaypividqdYenkeptgkptsgvkisdvtfknvtgt 280
                      ++++k++        n   Gv  Kt+             g  g vsnv  +++ l++v+ pi + q   n++ +  ++s+++ s++tf++ tgt
      CDO69980.1 286 VIENAKMIrldpkvqpNMGSGVYFKTWTgsvhgspptgggGGGGFVSNVIAKDVSLDEVTVPIHVYQT--NGGSSSDAPSKLQFSNLTFSDWTGT 378
                     ******98443433334568*******977777776666556789******************98663..677777779**************** PP

  Glyco_hydro_28 281 vksaeavkllcekgskcsdvtmsdvkitg..g.kstskcknvks 321
                     ++      ++c+ +++c ++ ++ +k+    g     kc nv s
      CDO69980.1 379 SQR--PTNIECSPAVPCPNIRFHSIKVAPpnGtAPIYKCVNVAS 420
                     *99..66789*****************87433577788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4675.50
//
Query:       CDO69981.1  [L=93]
Description: hypothetical protein BN946_scf184836.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-28   96.3   0.0    8.9e-28   96.0   0.0    1.1  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0     5e-32   8.9e-28       1      80 [.      11      86 ..      11      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5e-32
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS---- CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvk 80
                   rs++kgpf     + ++r+a   +++ +ikt++R++tIlP+++gl++ V+nGk+++pv+++++mvGhkLgEF++Trk+++
     CDO69981.1 11 RSAWKGPFFV--AFPNLRQAL--ENNIPIKTQARSCTILPNFIGLRFMVHNGKDYIPVTVTQDMVGHKLGEFAITRKRFT 86
                   7889997554..344555555..47899*************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 689.92
//
Query:       CDO69982.1  [L=170]
Description: hypothetical protein BN946_scf184836.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1207.74
//
Query:       CDO69983.1  [L=217]
Description: hypothetical protein BN946_scf184836.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1653.69
//
Query:       CDO69984.1  [L=464]
Description: hypothetical protein BN946_scf184836.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.3    5.1  18.3        4.6    4.6  18.3    1.1  1  DUF3584   Protein of unknown function (DUF3584)
        3.6    8.1   8.6         62    4.1   0.1    3.8  3  GspH      Type II transport protein GspH


Domain annotation for each model (and alignments):
>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  18.3   0.00051       4.6     406     537 ..     328     453 ..     309     455 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.00051
     DUF3584 406 ireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieeadealekaqeelekaeaevealqaeeeqlrkk 504
                 ++ + d+l++a++ +l  l   lr   e   ++ ++ e+  e++++e++   ++ ++  Ee      a ++ ++a++++e+a +++  ++++++++ ++
  CDO69984.1 328 VKKAYDTLHEAFDGELTRLYGTLRCAVEGVLQQQRDLEQAREEAIKEKDRADRAIKQAREE------AIKQKDRADRAIEQAIEQKDLADRALKEATEQ 420
                 5556666777777777777777776666555555555555555554444333333333333......33344578888888888888889999999999 PP

     DUF3584 505 rdeadealqkaerrleqlrqaleeleeqlsPqa 537
                 +d a++al +    l q++++le+l++q   qa
  CDO69984.1 421 KDRAQRALAQKDLLLAQQAAQLEALRLQSPSQA 453
                 999999999999999999999999998866665 PP

>> GspH  Type II transport protein GspH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3    0.0082        73       4      86 ..      57     180 ..      54     200 .. 0.49
   2 ?    4.1   0.1     0.007        62       6      19 ..     361     374 ..     359     379 .. 0.86
   3 ?    3.2   0.6     0.013   1.2e+02       8      22 ..     381     395 ..     376     456 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHSS-EE....EECTT......E................EEESCEES............SSCCCCEETTTCSSEEEEEESSSSTT CS
        GspH   4 elaaalqlArseAvrrgrpvt....lcpss......g................wqggWrvf............vdanangtldggedvlrrgaaldggd 64 
                 +l  al lA ++Avr          +c+ s      +                w+     +            +        d++  + +++a   +++
  CDO69984.1  57 RLTDALKLAYEQAVRNHGFSPdrarVCQLSfmkerlQsqheyilayvtidgqpWA----EGasvrlgiircerT-------VDSELVTPKTHAKAVSSN 144
                 7777888888888877653333444666666654441344455444444333333....333333533333331.......333333333333333333 PP

                 ESSEC...............TT--SCEEE-TTSSCB- CS
        GspH  65 tltga...............akgtpqitFnpsGgelt 86 
                 t++++               a++ + i+F+p+G +  
  CDO69984.1 145 TESSSkvsgtsspssqgtyiAAADQFILFDPTG-IVK 180
                 333333444444555555568888999999999.333 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.007
                 HHHHHHHHHHHHHH CS
        GspH   6 aaalqlArseAvrr 19 
                 +++l++Ar+eA++ 
  CDO69984.1 361 QRDLEQAREEAIKE 374
                 579*********97 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHSS- CS
        GspH   8 alqlArseAvrrgrp 22 
                 a+ +Ar+eA+++  +
  CDO69984.1 381 AIKQAREEAIKQKDR 395
                 799*******99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 3076.44
//
Query:       CDO69985.1  [L=93]
Description: hypothetical protein BN946_scf184836.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-28   96.3   0.0    8.9e-28   96.0   0.0    1.1  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0     5e-32   8.9e-28       1      80 [.      11      86 ..      11      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5e-32
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS---- CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvk 80
                   rs++kgpf     + ++r+a   +++ +ikt++R++tIlP+++gl++ V+nGk+++pv+++++mvGhkLgEF++Trk+++
     CDO69985.1 11 RSAWKGPFFV--AFPNLRQAL--ENNIPIKTQARSCTILPNFIGLRFMVHNGKDYIPVTVTQDMVGHKLGEFAITRKRFT 86
                   7889997554..344555555..47899*************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 677.52
//
Query:       CDO69986.1  [L=235]
Description: hypothetical protein BN946_scf184836.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.3    7.6   8.8        9.4    6.8   8.8    1.4  1  TPPII_N   Tripeptidyl peptidase II N terminal


Domain annotation for each model (and alignments):
>> TPPII_N  Tripeptidyl peptidase II N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.8   0.00053       9.4       9      84 ..     141     217 ..     134     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00053
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX----HHHHHHHHHHHHH CS
     TPPII_N   9 aanataaaaaavtanaakpkaaataqaatsvgspaagdg.vatqtdgpaegsgspaspkkgkakaDeYaEslRDfqc 84 
                 +a++t a ++++ ++++ +  aat+ a  s g + +g+g   t t+g   ++gs++sp    +      ++l D q+
  CDO69986.1 141 TATSTNAGPTVTVTDGTGGAGAATISAGGSSGGSVSGSGtLPTVTEGQSTSNGSGTSPTSPTSTGQAANDALGDLQT 217
                 67777777788888889899999**9999886666655516799999999999999998888887777788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1681.28
//
Query:       CDO69987.1  [L=483]
Description: hypothetical protein BN946_scf184836.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     5e-108  360.7  20.5   5.9e-108  360.5  20.5    1.1  1  STE3      Pheromone A receptor
  ------ inclusion threshold ------
        0.2   11.1   5.9       0.51    9.8   0.9    2.8  2  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> STE3  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.5  20.5  6.6e-112  5.9e-108       1     289 []      11     298 ..      11     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 360.5 bits;  conditional E-value: 6.6e-112
        STE3   1 vlsflafvlvliplpwhlrarnigalllilwllllnlisfvnaiiWsgnvvdkapvwCDisskliiaasvglpaallcIvrrLykilslravllsskek 99 
                 +++fl+f+l l+p+pwhl+a+n g++++++w +l+ li+fv++i W++n+++kap wCDis+k+i++a vg+paa++cI+rrLy i+s++ v++s +e+
  CDO69987.1  11 IFAFLGFILALVPFPWHLQAWNAGTCIFMVWASLASLIQFVDSIFWHDNAINKAPIWCDISTKFIVGAGVGIPAASACISRRLYTIASTSYVTVSARER 109
                 69************************************************************************************************* PP

        STE3 100 rrkliidlliclgiPllimalhyivqghRydIiediGCvpalyntwlalvlvliwpliislvaavyavltlrafikrrkqfkellsssnsglnksrflR 198
                 rr+++id++i++giP+++m+lhy+vqghR++I+ diGCvp++ nt+la++lv++wp+++++v++vy++ltlraf+ rr+qf++++ +s s+++ sr++R
  CDO69987.1 110 RRAIYIDVTIGVGIPVVVMLLHYVVQGHRFNILGDIGCVPTIFNTPLAYPLVYMWPPLLGCVSFVYSALTLRAFWVRRMQFRDVVCKS-SSMTLSRYFR 207
                 ***********************************************************************************88887.********** PP

        STE3 199 LlalalliilltlplsiyllvsnltqsplqpwysweevhadfstilkvpasewkasskevsalelnrwilvvlailfflfFGfgkeavksY 289
                 Ll+la + + + +pl+++ +++n   ++++pw+sw+++h++fs+++++p++ w++++  v+++el rwi++++a++ff++FGf++ea+k+Y
  CDO69987.1 208 LLLLASIDMACNVPLTVLNMYINNDGVTMSPWVSWANTHYNFSHVEQIPSILWRTNRAFVVSAELGRWIFPCCALIFFALFGFAEEARKHY 298
                 ******************************************************************************************9 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3    0.0092        83      12      19 ..      76      83 ..      69      85 .. 0.82
   2 ?    9.8   0.9   5.7e-05      0.51      12      25 ..     117     130 ..     116     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0092
        SKG6 12 IavaVaVP 19
                ++++V++P
  CDO69987.1 76 VGAGVGIP 83
                9******* PP

  == domain 2  score: 9.8 bits;  conditional E-value: 5.7e-05
        SKG6  12 IavaVaVPVaViii 25 
                 + ++V++PV+V+++
  CDO69987.1 117 VTIGVGIPVVVMLL 130
                 5689*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3546.50
//
Query:       CDO69988.1  [L=346]
Description: hypothetical protein BN946_scf184836.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-78  262.7  24.3    1.8e-55  188.2   7.3    2.0  2  STE3      Pheromone A receptor


Domain annotation for each model (and alignments):
>> STE3  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   9.2   2.6e-27   4.7e-23       1      61 [.      10      70 ..      10      71 .. 0.98
   2 !  188.2   7.3     1e-59   1.8e-55     121     289 .]      70     237 ..      70     237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.6e-27
        STE3  1 vlsflafvlvliplpwhlrarnigalllilwllllnlisfvnaiiWsgnvvdkapvwCDis 61
                +lsfl+fvlvl+plpwhl+a+n+g++l+i+w+ ++ l+ fvn+++W+gn++++ap wCDis
  CDO69988.1 10 ILSFLGFVLVLVPLPWHLQAWNSGTCLFIFWTAIASLNLFVNSVVWHGNALNTAPIWCDIS 70
                589*********************************************************8 PP

  == domain 2  score: 188.2 bits;  conditional E-value: 1e-59
        STE3 121 hyivqghRydIiediGCvpalyntwlalvlvliwpliislvaavyavltlrafikrrkqfkellsssnsglnksrflRLlalalliilltlplsiyllv 219
                 +y+v+ghR+dI+ediGC+pa+y+t+++++l+l+wp++i+lv+ vy+++ l+af krr+qf e++s + s+l+ +r++RL+a+a++ +l+++p+s+y ++
  CDO69988.1  70 SYVVSGHRFDIYEDIGCQPAIYTTPFTFPLLLCWPIVIGLVSGVYCAMSLYAFNKRRAQFVEFMSAH-SALTITRYFRLMAIAMTDLLCSVPISAYGIY 167
                 69**************************************************************997.******************************* PP

        STE3 220 snltqsplqpwysweevhadfstilkvpasewkasskevsalelnrwilvvlailfflfFGfgkeavksY 289
                  n+  + ++pw+sw+++h +f ++++vpa  w+as+++v ++el rw+++++a++ff+fFGf+ ea++ Y
  CDO69988.1 168 LNIVDGGINPWISWDDTHFQFWRVDQVPAAFWRASRDTVISFELARWLIPFCAFMFFAFFGFAAEARAYY 237
                 *****99************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2187.73
//
Query:       CDO69989.1  [L=86]
Description: hypothetical protein BN946_scf184758.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-12   47.8   0.0    2.5e-12   47.3   0.0    1.2  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.4e-16   2.5e-12       1      35 [.      40      74 ..      40      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.4e-16
                EEEEEETTTTS-HHHHTTS-TTSEEEEEETTG--- CS
      Pro_CA  1 alvigCsDSRvppelitdagpGdlFvvrnvgnlvp 35
                +l+igCsDSRvp++++t ++pGd+Fv+rn++++v 
  CDO69989.1 40 VLWIGCSDSRVPESVVTASKPGDIFVHRNIAKCVL 74
                59*****************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 610.52
//
Query:       CDO69990.1  [L=245]
Description: hypothetical protein BN946_scf184758.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.1   0.0       0.17   11.8   0.0    1.6  2  AidB_N    Adaptive response protein AidB N-terminal domain


Domain annotation for each model (and alignments):
>> AidB_N  Adaptive response protein AidB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-06      0.17      44      81 ..      11      50 ..       6      70 .. 0.85
   2 ?   -3.1   0.0      0.37   6.7e+03     105     105 ..     165     165 ..     135     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-06
      AidB_N 44 aevlelarlanrnpPrlrthDrfGrRiDevefhp..ayha 81
                ae++++a+  nr  Pr rt+   G R++ v f p  ++++
  CDO69990.1 11 AEFRSWAKGCNRLDPRSRTYGPCGFRAELVGFAPlrGWRR 50
                58999***************************99444665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.37
      AidB_N 105 v 105
                 +
  CDO69990.1 165 T 165
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1782.01
//
Query:       CDO69991.1  [L=351]
Description: hypothetical protein BN946_scf184973.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-51  174.8   7.1    2.7e-51  174.5   7.1    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   7.1   1.5e-55   2.7e-51       6     227 .]      63     310 ..      58     310 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 1.5e-55
                 HHHHHHHHHHHHHHHHHHHHHH..HHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHH CS
         MIP   6 kflravlAEflatlllvfigvg..salnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllG 102
                 +++++ +AEf++ ++l+++g+g  +++ ++++++  a+ + +++++  ++++++ a +v + +giSG+H+NPavT+al+ +r ++ +++++Yi aQ++G
  CDO69991.1  63 DLIKEPVAEFFGVMILIIFGTGvdCQVILSRNTKV-AAVPFGDYLSLNFGWAVGTALGVWVSGGISGGHINPAVTIALATFRDFPWRKVPVYIFAQVMG 160
                 568999****************8889988888855.656679********************************************************* PP

                 HHHHHHHHHHHCHHH.............HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHS CS
         MIP 103 aivaaallklltkgl.............esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltG 188
                 ++++a+++++ + ++               +aglf+++ ++++++++  + E++ t+vL++vv+a+td ++      l+pl++++++  i ++ + +tG
  CDO69991.1 161 GLCGAGIIYANYIHVidiveggrhirtvPGTAGLFSTYAADYMTSVSCWFDEFLGTAVLLIVVCAITDVRNGPPPPGLVPLVLFIMILGIGAALGMQTG 259
                 **************9**********99878899*****************************************999********************** PP

                 T-SSHHHHHHHHHHHTH...........STT.TTHHHHHHHHHHHHHHHHH CS
         MIP 189 aamNpArslgpavvlnk...........fed.hwvylvGPliGailgalvY 227
                  a+NpAr+lgp++++             +++  w ++++P++G+++g+++Y
  CDO69991.1 260 YAINPARDLGPRLLTAMvgyggavfsfrHQYwLWCPIIAPIVGGLVGTFLY 310
                 ***************999*******98644425899*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2414.94
//
Query:       CDO69992.1  [L=442]
Description: hypothetical protein BN946_scf184973.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.035   14.6   5.0      0.035   14.6   5.0    2.3  2  ZapB        Cell division protein ZapB
       0.13   12.3   2.6       0.51   10.4   2.6    2.0  1  TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
       0.15   11.8  11.9        1.8    8.3   4.5    2.9  2  She9_MDM33  She9 / Mdm33 family
       0.21   11.0   9.9      0.046   13.2   4.8    2.3  2  Golgin_A5   Golgin subfamily A member 5
        1.6    9.3   9.2        6.4    7.3   1.4    2.6  2  BMFP        Membrane fusogenic activity
        1.8    8.8   6.2        1.3    9.3   2.5    2.6  2  Spc24       Spc24 subunit of Ndc80
        2.3    8.6   9.6        2.1    8.7   4.1    2.4  2  YlqD        YlqD protein


Domain annotation for each model (and alignments):
>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       1.5   3.9e+03      44      56 ..      33      45 ..      24      74 .. 0.63
   2 ?   14.6   5.0   1.4e-05     0.035      12      66 ..      96     154 ..      88     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.5
        ZapB 44 leeeneqlkeere 56
                 ++e+ q ++er 
  CDO69992.1 33 AQAEVAQARAERD 45
                4455555555553 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.4e-05
        ZapB  12 kiqkaidtitlLqmeieeLkeeneelkeenrele....eeneqlkeereawqerlkkLL 66 
                 +i++  +tit+L+ e+ + k +   l+e  r+      e+  + ++er+ + +r++ L+
  CDO69992.1  96 QIKHQAETITQLRSEVHQWKTQLTRLEESSRQEIddwkEQYRRAEHERSRLSARIDELI 154
                 688889****************9888876655445666*******************98 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.6    0.0002      0.51       5      58 ..      95     152 ..      93     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
  TMF_DNA_bd   5 kklkeKDeqIaqLmeEGekLskk....elklnntikkLrkknkelekeikelkkklek 58 
                 k++k   e+I+qL++E  +++ +    e   ++ i+  +++ + +e e ++l+ ++++
  CDO69992.1  95 KQIKHQAETITQLRSEVHQWKTQltrlEESSRQEIDDWKEQYRRAEHERSRLSARIDE 152
                 8999999**********99888822224455678999999999999999999999987 PP

>> She9_MDM33  She9 / Mdm33 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.8    0.0019       4.9      45      86 ..      29      70 ..      13      79 .. 0.84
   2 ?    8.3   4.5    0.0007       1.8      31      85 ..     103     161 ..      78     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0019
  She9_MDM33 45 eleeakeevreakeayeeaiekrsksqrevneLLqRkssWsp 86
                  ++a++ev +a+++ ++a+++ +++q + ++L  R + W +
  CDO69992.1 29 VQDQAQAEVAQARAERDDAVKALHEAQLDAKDLAMREEGWRS 70
                4568999*********************************75 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0007
  She9_MDM33  31 eieklkksieeleeel....eeakeevreakeayeeaiekrsksqrevneLLqRkssWs 85 
                 +i +l++++++ +++l    e++++e+ + ke+y++a ++rs+    ++eL++ + +W+
  CDO69992.1 103 TITQLRSEVHQWKTQLtrleESSRQEIDDWKEQYRRAEHERSRLSARIDELISGQLAWN 161
                 678888888888777722223568889999***********************999997 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.3      0.27   6.9e+02      80     106 ..      29      55 ..      11      81 .. 0.50
   2 ?   13.2   4.8   1.8e-05     0.046      55     102 ..      96     143 ..      63     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
   Golgin_A5  80 leaqqqaeaeslreqlqeleeqleeer 106
                 +++q+qae+ ++r +  ++ ++l+e +
  CDO69992.1  29 VQDQAQAEVAQARAERDDAVKALHEAQ 55 
                 333333333333333333333333222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.8e-05
   Golgin_A5  55 erdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeql 102
                 + +++ e +++l+++++q +t+l +le++  +e++ ++eq +++e++ 
  CDO69992.1  96 QIKHQAETITQLRSEVHQWKTQLTRLEESSRQEIDDWKEQYRRAEHER 143
                 3355668999*******************************9998764 PP

>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.4    0.0025       6.4      14      50 ..      29      66 ..      22      67 .. 0.86
   2 ?    5.7   1.3    0.0081        21      35      75 ..     113     153 ..      91     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0025
        BMFP 14 vgdalpaaag.vreeieknvravlqealsklDLVtREE 50
                v+d ++a ++ +r e + +v+a  +++l   DL  REE
  CDO69992.1 29 VQDQAQAEVAqARAERDDAVKALHEAQLDAKDLAMREE 66
                55666666666999***********************9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0081
        BMFP  35 vlqealsklDLVtREEFdvqrevlartrekleaLearvaaL 75 
                 + + +l++l+  +R+E d  +e   r+  +  +L ar+++L
  CDO69992.1 113 QWKTQLTRLEESSRQEIDDWKEQYRRAEHERSRLSARIDEL 153
                 345679999999***************************98 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.73   1.9e+03      15      44 ..      32      65 ..      20      93 .. 0.57
   2 ?    9.3   2.5   0.00051       1.3      10      46 ..      94     135 ..      88     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.73
       Spc24 15 dleselesleselaelkeeleeleeesee....k 44
                ++++e+ + ++e ++  + l+e +   ++    +
  CDO69992.1 32 QAQAEVAQARAERDDAVKALHEAQLDAKDlamrE 65
                5566666666777666666666666555544431 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00051
       Spc24  10 akelsdleselesleselaelkeeleeleeesee.....kes 46 
                 +k+++++ +++++l+se +++k++l+ lee+s +     ke+
  CDO69992.1  94 TKQIKHQAETITQLRSEVHQWKTQLTRLEESSRQeiddwKEQ 135
                 5899999***********************999966655333 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.081   2.1e+02      57      94 ..      29      66 ..       9      75 .. 0.74
   2 ?    8.7   4.1   0.00081       2.1      18      78 ..      93     152 ..      90     158 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.081
        YlqD 57 qieeiqeqvekekserlekkkqllqqleqvqkLelgse 94
                 ++++q++v++ ++er ++ k l +   + + L++ +e
  CDO69992.1 29 VQDQAQAEVAQARAERDDAVKALHEAQLDAKDLAMREE 66
                46788888999999999999988888888888888777 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00081
        YlqD  18 KeelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkq 78 
                 +++ +++  + i+ql +e++q+++q+ rl+++  +q+++  +e   ++e+e+s++ +++++
  CDO69992.1  93 RTKQIKHQAETITQLRSEVHQWKTQLTRLEESS-RQEIDDWKEQYRRAEHERSRLSARIDE 152
                 666677788999****************96666.556666666666666777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1798  (0.100284); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.53
# Mc/sec: 2523.68
//
Query:       CDO69993.1  [L=242]
Description: hypothetical protein BN946_scf184973.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-59  200.1   3.3    3.3e-59  199.9   3.3    1.0  1  OGFr_N    Opioid growth factor receptor (OGFr) conserved regi


Domain annotation for each model (and alignments):
>> OGFr_N  Opioid growth factor receptor (OGFr) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   3.3   1.8e-63   3.3e-59       6     203 ..      24     224 ..      19     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 1.8e-63
      OGFr_N   6 llnlkfYkneikfkPdg..ltieellkkwkedydkLeenhsYiqWlfPlrekgvnfeakeLtkkeieefkkseevkkrllkaYklmLdfyGikledeet 102
                 ++n++fY+n+ + + ++  ++  +l+ +w++dy kLe +h YiqWlfPl+e+g+n+ea++L+k+ei ++k + ++ +rl ++Y++mL+fyG++l++++t
  CDO69993.1  24 NANFEFYSNKRRHSSEQsvVFHVNLTLRWRTDYAKLEYKHGYIQWLFPLQEYGMNYEAQPLQKHEIAAMKADGTILERLHRSYTIMLGFYGMELVSRDT 122
                 589******9987765511344578899*********************************************************************** PP

      OGFr_N 103 GevkraenwkerfenLnekshnnlritriLksLgelgyehyqapLvkffleetlvekelpn.vkqsald.yfvfavrdkrerrellkfaykhykprekf 199
                 Ge++ra +w+erf+nL +  hnnlri riLksL+e+g+eh +a  v f+l e   +k+l++ +  s++d ++ +++r+k+er+ + +++ ++ +++++f
  CDO69993.1 123 GELRRALDWEERFRNLVRAPHNNLRISRILKSLSEFGLEHLNAGFVLFVLAEQSTNKQLNTpMIISSMDrWWANCLRNKEERHWINEMV-RRVRTDSDF 220
                 **************************************************99999999875488899998*************999998.677888889 PP

      OGFr_N 200 vwgp 203
                 v++ 
  CDO69993.1 221 VFTD 224
                 8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.35s 00:00:01.00 Elapsed: 00:00:00.58
# Mc/sec: 1252.75
//
Query:       CDO69994.1  [L=83]
Description: hypothetical protein BN946_scf184973.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       130  (0.00725082); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 462.90
//
Query:       CDO69995.1  [L=113]
Description: hypothetical protein BN946_scf184973.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-07   30.5   0.1    2.4e-06   27.6   0.1    2.0  1  DUF727    Protein of unknown function (DUF727)


Domain annotation for each model (and alignments):
>> DUF727  Protein of unknown function (DUF727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   1.3e-10   2.4e-06       3     105 .]      17     108 ..      15     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-10
      DUF727   3 kEaeaavnevafgVkeisv..seklpsteeviylnvetlEgeelcvelsakGfrvvsskydeveeeeekedeekyfetlyaLLdkiSpeyrekFgekll 99 
                 +E e+a+ e ++g+++ ++  s+ l+ t++v+      lEge +++ l+++G +    + d         d+e++fetl++LL+++Sp+y+++  ++ll
  CDO69995.1  17 EELERALIENSYGISSFELmsSSPLKATARVV-----LLEGEPIIISLTSRGPSEPPVDPD--------LDSETVFETLEQLLQTVSPQYESAKRNALL 102
                 67788888888888888663344444444444.....468999999999999653333333........55889************************* PP

      DUF727 100 ekLekl 105
                 +kLe+l
  CDO69995.1 103 AKLEAL 108
                 ***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 785.62
//
Query:       CDO69996.1  [L=642]
Description: hypothetical protein BN946_scf184973.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.3e-124  415.1   0.0   8.4e-124  414.9   0.0    1.0  1  Sec1      Sec1 family


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.9   0.0  4.7e-128  8.4e-124       1     574 [.      22     560 ..      22     561 .. 0.84

  Alignments for each domain:
  == domain 1  score: 414.9 bits;  conditional E-value: 4.7e-128
                 EEEEE-HHHHHHHHTT--HHHHHTTTEEETT..T--S-.....BTTSEEEEEE-S-HHHHHHHHHHHHSS-SBS-EEEEESS---HHHHHHHHH..S.G CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVtkieklkkrepskrealphlkaiyflrptkenidrlakdfisarrykeyhifftprlseslleglakade.e 98 
                 KvL+lD+++++i+s+  ++s ll+++V+  +k+  + ++kre++ h+k+i+fl+p++e+ ++l +   ++++y+ey+++f++ ls++ +e+la ade e
  CDO69996.1  22 KVLLLDNHTTPIVSLSATQSTLLSHQVYLTDKI--D-NKKRERMAHMKCICFLQPSEESFEALEA-ELREPKYGEYYLYFSNILSKTAIERLADADEfE 116
                 9***************************55555..2.345677********************95.567799************************99* PP

                 .GGGEEEEE----SEEEETTEEE-STTHHHHSTTG.....GG.......--HHHHHHHHHHHHHHH-..--EEEE-TT-HHHHHHHH...........H CS
        Sec1  99 vvkkvklkelnldfvplesdlfslnpelplsfrdlyldndnsaleeeieslldriakgLlsvllslekkiPiirykgsaasmvakkladelkekids.k 196
                 vv++v+  e+++d+ p+ + lfsln ++p++ r ly + +n +    + ++l+r+++g+++vllsl kk P+iry++  +s +akkl  e++++i+s +
  CDO69996.1 117 VVREVQ--EYFADYAPILPCLFSLN-HTPNAQRPLYGNSPNVW----DPKALERAVQGVTAVLLSL-KKKPVIRYEK--SSPMAKKLGVEIQHRIQSeS 205
                 ******..****************8.77889999985555556....679****************.99******99..9****************977 PP

                 HHHTTT--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--BTEEEEEE--SS.SEEEEEE--TT...-TTHHHHTTSBHHHHHHHHHHHHHHHHHH CS
        Sec1 197 knfesessrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgglnnnnvvleeep.keekeaelvess.sDeffaelrhlnfgevgeklkkeakeyqee 293
                 + f +  ++ +p+L+IlDR+ D+vtpll++wTYqa++++llg ++n++v+l+ +p ++++ +e+++++ +D+ffa +    fg++g++lk+++++yq+ 
  CDO69996.1 206 QLFDFRLTQVPPLLLILDRRSDPVTPLLSPWTYQAMVHELLG-IQNGRVDLSMVPdIRPELKEITLTPnTDPFFAAHYLATFGDLGTALKNYVQSYQSH 303
                 777777***********************************8.*************999******9999****************************99 PP

                 H.HTTT....-TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHHSS--.B--..-HHHHHHHH-TTS-H.HHHHHHHH CS
        Sec1 294 n.ekkrn.gakesiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlatgesdkkikekkvieeliaddeptseledklRLll 390
                 + + ++  +  +si+d+k+fv+++pe++++ +++skH+ l++el++ v+++kl++l+e+Eq latg++  +      ++ l+a+ + ++++ +klRL++
  CDO69996.1 304 SlA-HSPsSI-NSITDMKRFVEEYPEFRKLGGNVSKHVALVGELSRLVERDKLLDLGEVEQGLATGSG--ADLKD--VQALVAN-PAIQPW-NKLRLVM 394
                 944.333244.6****************************************************9632..33333..6699998.778886.******* PP

                 HHHH....-B.-HT--GG....GGHHHH..GGGGG........---.BGGG-------...........---------S...TT-.----HHHHHHHHH CS
        Sec1 391 lyslv.egglkekelkellrelvqsaly..gleylktlrsleklgllkkrkgkksskkkss....lklikeeedeesnydlsgvs.ryaPllvrlveal 481
                 l++l+ ++  +++++  l + ++++ +   + + +  l ++++       + +++ ++++      +   +  +      +++v+ +++P+l +++e+l
  CDO69996.1 395 LFALRyQKS-QAQNVASLINLMLENGVSreDAKLVYVLLNVAGS-----DQRQEDLFSAEAllakGRSALKGLKG-----VENVYmQHTPHLSQTLENL 482
                 *****6533.3445555544333323223334444446666643.....33333333332233333333333344.....4559*************** PP

                 TTT-S-TTTS-BSS-GGGS--------------------------S-EEEEEEEEEE-HHHHHHHHHHT...T......SSSEEEEEEEEE--HHHHHH CS
        Sec1 482 ikgkklssespslskkdpsqeesssslrsakktnsaskesaekkkkqrviVffvGGvTysEiralrllskqek......knkeiiigttsilnpksfle 574
                 +k ++l++ + ++ +++                  ++++ +   ++ +vi+f+vGG Ty+E+r + ll+++++      ++ + ++g+t+++n++sfle
  CDO69996.1 483 FK-GRLKEATHPFLDGA-----------------GPNAGLQ---RPGDVIIFMVGGTTYAEARVVALLNQESSfgnsaaSGTRLLLGGTCVHNSSSFLE 560
                 **.99999999987543.................2333333...4578*********************8777*****99999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4574.29
//
Query:       CDO69997.1  [L=422]
Description: hypothetical protein BN946_scf184973.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-84  281.5   0.1    8.2e-84  280.9   0.1    1.3  1  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
    1.9e-25   89.1   0.2    1.9e-25   89.1   0.2    1.8  2  ERGIC_N          Endoplasmic Reticulum-Golgi Intermediate Com


Domain annotation for each model (and alignments):
>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.9   0.1   9.1e-88   8.2e-84       1     221 []     145     395 ..     145     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: 280.9 bits;  conditional E-value: 9.1e-88
  COPIIcoated_ERV   1 CYgaeeee.kCCntCedVreaYkkkgwafkdgeeieqCeregykeklkeqkkegCrikGklevnkvaGnfhiapgksfqeekrhvhdlssyek. 92 
                      CYg  e+  +CCntCedVr+aY ++gw+f+++++ieqC +eg++eklkeq++egC+i+G+++vnkv Gn+h++pg+sf+++++++ dl +y + 
       CDO69997.1 145 CYGGVEPPsGCCNTCEDVRQAYVNRGWSFNRPDSIEQCVQEGWSEKLKEQSTEGCNISGRIRVNKVVGNIHLSPGRSFRTSSHNLYDLVPYLRt 238
                      **9988888**********************************************************************************976 PP

  COPIIcoated_ERV  93 ..eklnfsHtihkLsfgeelpgek................knPLdgtkkeeeekalmfqYflkvvptkyekldkkkietnqysvteherslegg 168
                        ++++f+Htih++ fg++ + +                  nPLdg + ++ ++++mfqYflkvv+t++++ld+k+i+t+qys+t+ er+l++g
       CDO69997.1 239 dgNRHDFTHTIHHFAFGSDDEYDLakarigkelkerlgiaANPLDGNTGRTIKQQYMFQYFLKVVSTQFRTLDGKTINTHQYSATHFERDLDKG 332
                      445**************775544479*************99*******88999****************************************9 PP

  COPIIcoated_ERV 169 kde..........sekglPGvffsYeisPlkvivkeerksflhfltslcaiiGGvltvasliD 221
                       +e          +++g+PG ff+YeisPl++++ e+r+sf+hflts+cai+GGvltvasliD
       CDO69997.1 333 ATEntatglhvlhGTGGIPGAFFNYEISPLRIVHAETRQSFAHFLTSTCAIVGGVLTVASLID 395
                      9999********9999**********************************************9 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.2   2.1e-29   1.9e-25       1      90 [.      10      99 ..      10     100 .. 0.98
   2 ?   -2.5   0.1      0.76   6.9e+03      19      29 ..     383     393 ..     368     401 .. 0.62

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.1e-29
                XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTECEE CS
     ERGIC_N  1 lrrfDafpKvpedltqktlsGgiislvcillilfLllselteylttevkeelvvdksrsekleinlditfpalpCellsldvqDesgehe 90
                l+ +Daf K+ ed+++kt +G++++l+++++i+ ++++e+++y++++v++++vvd+sr+e+l++ +++tfp++pC+llsldv+D+sge++
  CDO69997.1 10 LKGVDAFGKTMEDVKVKTRTGALLTLIAAAIIISFTTMEFFDYRRVNVDTSVVVDRSRGERLTVYMNVTFPRVPCYLLSLDVMDISGETQ 99
                6789**********99***********************************************************************987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.76
                 XXXXXXXXXXX CS
     ERGIC_N  19 lsGgiislvci 29 
                 + Gg+++++++
  CDO69997.1 383 IVGGVLTVASL 393
                 45666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3101.34
//
Query:       CDO69998.1  [L=331]
Description: hypothetical protein BN946_scf184973.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2615.12
//
Query:       CDO69999.1  [L=1446]
Description: hypothetical protein BN946_scf184354.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-75  251.6  27.0    9.5e-75  251.6  27.0    2.3  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    1.6e-22   79.0   1.1    3.8e-22   77.8   1.1    1.6  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    3.3e-12   47.2   3.2    3.4e-07   30.8   0.8    3.3  2  Hydrolase        haloacid dehalogenase-like hydrolase
      2e-10   40.6   0.0      2e-09   37.4   0.0    2.6  2  Cation_ATPase    Cation transport ATPase (P-type)
    0.00014   21.4   0.0    0.00014   21.4   0.0    2.9  3  E1-E2_ATPase     E1-E2 ATPase
    0.00022   21.0   0.9     0.0049   16.7   0.5    2.3  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.4       2.9   8.8e+03      43      58 ..      87     102 ..      55     121 .. 0.55
   2 ?   -0.7   0.1      0.34     1e+03      69     128 ..     398     459 ..     395     490 .. 0.73
   3 !  251.6  27.0   3.2e-78   9.5e-75       1     249 []    1040    1291 ..    1040    1291 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.9
  PhoLip_ATPase_C  43 ftlvqfwfqfyngfsg 58 
                      f+l+ ++ qf++ fs+
       CDO69999.1  87 FFLAIAILQFFSIFST 102
                      2223333333333332 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
  PhoLip_ATPase_C  69 lynllftslpvivlgifdqdvsae.lllkyPelYklgqknklfnlktfllw.ileglyqsli 128
                      + nl+  +   ++ gi+d  ++++      P lY + q + +  ++ +++w ++  ++q +i
       CDO69999.1 398 FINLIILAAMAVACGIVDAVLEQRdFPRGAPWLYGDTQDDDNPHINGLVTWaFALIVFQNII 459
                      78999999999999999999999856677899999999777666666777745555566655 PP

  == domain 3  score: 251.6 bits;  conditional E-value: 3.2e-78
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       v+aSDyaiaqFrfLkrLL+vhG+w+y R+ ++i+ ffyKn++ + v++wfq+y+++s+q+++++++l+++n+++t+ pvi +g+fd+ ++++
       CDO69999.1 1040 VNASDYAIAQFRFLKRLLFVHGHWCYARNGNMIVNFFYKNIICIGVLWWFQIYCAWSAQYVFDYTYLLFWNTFWTIAPVIGIGLFDRILDDH 1131
                       79****************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfs.dgktndlqlfgtlvftalvlvvnlkvaletktwtliliil 183 
                       +l+++PelY+++ k+++f +k fl+++++g++q++iiffl++++++ ++   dg++   ++f+t +++ +v+++nl   l+t+ wt +++++
       CDO69999.1 1132 VLMAMPELYRHSMKHEYFGTKLFLIYMFDGIVQATIIFFLILYSYTGTTARsDGYDIAQYEFSTNIAIGAVMAANLFNGLNTHVWTGWIFFA 1223
                       *******************************************988777777**********************************999999 PP

  PhoLip_ATPase_C  184 ilgsillyflflllyssllps..ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffps 249 
                       + + i+l+++++++ys + p    +++yg++++lf+sp fw+++llvv++al+p+++ k++k +f+ps
       CDO69999.1 1224 VALGIVLVWAYTAIYSVISPGwfPTNVYGNDHYLFRSPLFWFSILLVVILALTPRYIAKAYKLAFNPS 1291
                       999999**********99888999*****************************************996 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   1.1   1.3e-25   3.8e-22       9      63 ..      51     105 ..      35     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.3e-25
  PhoLip_ATPase_N   9 nekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplsp 63 
                      ++++ yasN++ TsKYt++tF+p+nL+eqFrr+aN++FL iailq++  +s++s 
       CDO69999.1  51 KKEHVYASNQVITSKYTIITFVPRNLLEQFRRIANIFFLAIAILQFFSIFSTVSA 105
                      33569**********************************************9975 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.8   1.1e-10   3.4e-07       2     156 ..     508     868 ..     507     897 .. 0.85
   2 !   13.9   0.1   1.7e-05      0.05     172     210 .]     987    1026 ..     963    1026 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.1e-10
                 SEEEEESBTTTBCHHHHHHHHHHHH....................................CHHHHHHHHHH.HHCHHHHHHHHHHHHH......HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxx.xxxxxxxxxxxxxxxx......xxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa....................................alalaaaletg.sehpigkalvaaakar......sgal 57 
                 + v+ Dk+GTLt+  ++ ++++                                       +++ a    t   + p+g++ +++a+++      s  l
  CDO69999.1 508 EYVFSDKTGTLTQNAMVFRQCTINGkvykgdevesdiapvpvpdsedkvdirsssstppsgKKSDASTSSTEaIPDPLGANTIKKAEHVlahfhdSTLL 606
                 66899***************9999888888888888888888888887777777777776544444444444899999999999999998999886666 PP

                 HHHHHETTTEHHHHTHHH..............HHHHH........HCHHHHHHHHHHHHHHCHHHHHH............................... CS
                 xxxxxxxxxxxxxxxxxx..............xxxxx........xxxxxxxxxxxxxxxxxxxxxxx............................... RF
   Hydrolase  58 tgfatfigrgayaigkpe..............wltal........dippdlgaaigsaqsqgrtvall............................... 103
                 +++a      a +  ++                   l         + p+ ga  ++aqs ++ + ++                               
  CDO69999.1 607 ADIAS-----AQQAVSRSgedkhgrmlngfwtV---LalchtalvSVDPHTGAIQYKAQSPDEAALVQaaadvgfvfrgrdrevltlqtpfcaagadgv 697
                 77777.....33333333333455555554431...13345566999999999999999999999999******************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   Hydrolase 104 ................................................................................................... 103
                                                                                                                    
  CDO69999.1 698 kyeryellnildftsarkrmsvivrrlgddgepegkvylltkgadnviierlspgqdemvrttedhlaefaseglrtltlaykvipeeqyeawaqryhe 796
                 *************************************************************************************************** PP

                 .....................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .....................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                                         +l+  +i+d   + +++ ea+a Lk+agi+v++ltgd  eta ++ +  +
  CDO69999.1 797 atislgereekveavsdeieqGLLLLGATAIEDR--LQDGVPEAIADLKEAGIKVWVLTGDKLETAIAIGHSTN 868
                 ************99999998545899999999**..******************************99887766 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.7e-05
                  TTTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  172 akpspegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210 
                    +sp +k  +++  + g ++ ++++GDg+nD+++++aA+
  CDO69999.1  987 CRVSPLQKALVVKLVKdGIGAMTLAIGDGANDVSMIQAAD 1026
                  5689999********9877888****************98 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   6.8e-13     2e-09       2      88 ..     637     749 ..     636     751 .. 0.81
   2 ?   -0.4   0.0      0.43   1.3e+03      13      28 ..     846     861 ..     794     866 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 6.8e-13
  Cation_ATPase   2 lcNsaafsensekdevkl.lGnktEsALlvlaeklgldteelree....................tkkvqeipFnssrKrmsvvlkle.....pek 71 
                    lc+ a +s ++ +++ ++   +++E+AL+++a+++g      ++e                    ++ ++++ F+s rKrmsv+++       pe+
     CDO69999.1 637 LCHTALVSVDPHTGAIQYkAQSPDEAALVQAAADVGFVFRGRDREvltlqtpfcaagadgvkyerYELLNILDFTSARKRMSVIVRRLgddgePEG 732
                    7888888777777776652689*************554444444456666666666677777667*********************779******* PP

  Cation_ATPase  72 kvrlyvKGApeiilkrC 88 
                    kv l++KGA ++i++r 
     CDO69999.1 733 KVYLLTKGADNVIIERL 749
                    **************985 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
  Cation_ATPase  13 ekdevkllGnktEsAL 28 
                      +++ l+G+k E+A+
     CDO69999.1 846 GIKVWVLTGDKLETAI 861
                    3456666777777665 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   2.2       4.5   1.3e+04     125     155 ..      87     106 ..      74     121 .. 0.35
   2 !   21.4   0.0   4.8e-08   0.00014      21     136 ..     246     416 ..     233     468 .. 0.77
   3 ?   -2.2   0.8      0.85   2.6e+03     146     157 ..    1218    1229 ..    1192    1287 .. 0.58

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 4.5
                   HHHHHHHHHHHS-STTTSSTTHHHHHHHHHH CS
  E1-E2_ATPase 125 vvlliallvflialllgkslaeallralall 155
                   + l+ia+l f+  ++           +++  
    CDO69999.1  87 FFLAIAILQFFSIFS-----------TVSAG 106
                   333333333333222...........22222 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.8e-08
                   GG--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-................................................ CS
  E1-E2_ATPase  21 kelvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek................................................ 64 
                   ++l++GDiv++   ++ paD+ i+  s+      v++  L GE    ++                                                
    CDO69999.1 246 EDLKVGDIVKVMDDEQLPADILICTTSEeenvaYVETKNLDGETNLKSRnacpalthlntaracadksnafrvecdrpdtnlykfnaavitpdgkkv 342
                   79**********************95554456799**********99999******************************************99999 PP

                   ..G-TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS CS
  E1-E2_ATPase  65 ..ekgdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvfli 136
                     + +  +  Gtv  + g +++vV+ tgedt++    + +  +k+++ + q + + +++ ++++++++a+ ++ +
    CDO69999.1 343 svDSNMVLLRGTVLRNtGWVIGVVLFTGEDTKIVL-NSGITPSKRSRVERQMNPQVFINLIILAAMAVACGIVDA 416
                   9778888889999888899999********98743.333333334444444444556666666666666555444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.85
                    HHHHHHHHHHHH CS
  E1-E2_ATPase  146 eallralallva 157 
                     ++++a+al ++
    CDO69999.1 1218 GWIFFAVALGIV 1229
                    444444444332 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.048   1.4e+02      16      53 ..     831     868 ..     827     882 .. 0.81
   2 !   16.7   0.5   1.6e-06    0.0049     205     227 ..    1008    1030 ..    1002    1041 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.048
                  --HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCC CS
  Hydrolase_3  16 isektkeaikklkekgikvviATGRslravlpvleelg 53 
                  +++   eai+ lke+gikv + TG +l++++ + ++ +
   CDO69999.1 831 LQDGVPEAIADLKEAGIKVWVLTGDKLETAIAIGHSTN 868
                  5666779*****************99998888777666 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.6e-06
                   GEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3  205 eviafGDgeNDieMLeaaglgvA 227 
                   +++a+GDg ND++M++aa++gv 
   CDO69999.1 1008 MTLAIGDGANDVSMIQAADVGVG 1030
                   79*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 10008.92
//
Query:       CDO70000.1  [L=155]
Description: hypothetical protein BN946_scf184354.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0022   18.1   0.1     0.0049   17.0   0.0    1.6  2  HTH_21           HTH-like domain
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.15   11.0   0.0    1.1  1  DDE_Tnp_ISAZ013  Rhodopirellula transposase DDE domain


Domain annotation for each model (and alignments):
>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.87   7.8e+03      28      36 ..      53      61 ..      48      64 .. 0.53
   2 !   17.0   0.0   5.5e-07    0.0049       9      51 ..      87     125 ..      76     134 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.87
      HTH_21 28 aeLrreggv 36
                a Lr e g+
  CDO70000.1 53 AKLREELGY 61
                455555544 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.5e-07
      HTH_21   9 lireifeeskgrYGyrriwaeLrreggvrvnhkrVrRlMrelG 51 
                 ++re+ ++s    G+  i+a+L r+ g+++++  Vr + +el+
  CDO70000.1  87 KVRELKDKS---KGAETIRAALARD-GIIISRQSVREILHELD 125
                 355555555...5************.788***********987 PP

>> DDE_Tnp_ISAZ013  Rhodopirellula transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.7e-05      0.15      13      64 ..      86     137 ..      79     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.7e-05
  DDE_Tnp_ISAZ013  13 dpesplrwttkslrklaeeLkeqghkvsaetvaelLkelgyslqsnrKtkeg 64 
                      d + +l+  +k ++++++ L + g+ +s++ v+e+L+el+ +  ++rK+ + 
       CDO70000.1  86 DKVRELKDKSKGAETIRAALARDGIIISRQSVREILHELDPEASASRKRGKR 137
                      6666778888999**************************9999888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1036.81
//
Query:       CDO70001.1  [L=192]
Description: hypothetical protein BN946_scf184354.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-08   31.8   0.0    2.3e-07   30.5   0.0    1.5  2  Pkinase      Protein kinase domain
     0.0077   15.5   0.0     0.0096   15.2   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.5e-11   2.3e-07      99     193 ..      15     126 ..       8     139 .. 0.81
   2 ?   -0.8   0.0     0.087   7.8e+02     237     259 ..     130     152 ..     121     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.5e-11
                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.............EEE-SGTTSEESSSSCSBCTTTSCGGG...S-HHHHTTSCB.SHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekge.............lKitDFGlakelessskltsfvgtseY...lAPEvlkeney.skkvDv 180
                 ++ + +++ l++l+++H  gi HrD  ++ +L++ + e             + + DF  a  +     +t+    + Y   lAPEv  +++y   k+Dv
  CDO70001.1  15 RLTQTWYNYLQALAFIHTLGIAHRDTEKSHFLVQYHPEslitmgvpltrprVYLNDFEYAIDFVDPAATTDLGPAEGYlrqLAPEVYLGKQYdPFKADV 113
                 56788999**************************64444666666777777**************99866666666663337*****99999678**** PP

                 HHHHHHHHHHHHS CS
     Pkinase 181 WslGvilyelltg 193
                 W  G  + ++++ 
  CDO70001.1 114 WQFGYSFSNFVST 126
                 ****988877665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.087
                 HHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 237 akdllkkllkkdpkkRltaeell 259
                 + ++l+++++ d   R+ta+e+ 
  CDO70001.1 130 IDEILDNIISPDAAVRPTAAEAR 152
                 668999*************9985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06    0.0096     103     194 ..      14     119 ..       9     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.............TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHH CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.............nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sks 186
                  ++l++  ++  ++++++++  + Hrd      L++              +  v + Df  a d  +   +++ + a+  ++ +apE+   k++   k+
   CDO70001.1  14 TRLTQTWYNYLQALAFIHTLGIAHRDTEKSHFLVQYhpeslitmgvpltRPRVYLNDFEYAIDFVDPAATTDLGPAEGYLRQLAPEVYLGKQYDpFKA 111
                  5677888888999**********************9999********9999*************99999999********************9747** PP

                  HHHHHHHH CS
  Pkinase_Tyr 187 DvWsfGvl 194
                  DvW fG  
   CDO70001.1 112 DVWQFGYS 119
                  ******65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1394.07
//
Query:       CDO70002.1  [L=401]
Description: hypothetical protein BN946_scf184354.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-07   31.2   0.0    3.2e-05   24.0   0.0    2.4  1  DUF3506     Domain of unknown function (DUF3506)
    3.2e-06   26.9   0.8      9e-06   25.4   0.8    1.8  1  F-box       F-box domain
    0.00019   21.3   0.7    0.00019   21.3   0.7    2.0  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> DUF3506  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.3e-09   3.2e-05      18     125 ..     323     400 ..     315     401 .] 0.72

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.3e-09
     DUF3506  18 ekPfqgiyvgdysghgceflllkqkdkddeaelekeedeseeeaekrkeergrleAiKLtGDpnvPrGevtFva......edlgeeGlvrvaeeeefkG 110
                  + ++g+++gdy+ hg+e l l+                           +  ++A K+tGD++vPrG +++         d+g               
  CDO70002.1 323 AETLEGLWLGDYGVHGTECLFLEYDA-----------------------VESVVRAWKITGDAHVPRGVCSWEIelkrptSDFG-------------PS 385
                 56789*****************9972.......................24679*****************9762222222222.............33 PP

     DUF3506 111 arvvkskghiAeegF 125
                  r ++++g +A +gF
  CDO70002.1 386 RRSYEGQGTLAPRGF 400
                 455666666666555 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.8   1.5e-09     9e-06       2      47 ..       3      49 ..       2      50 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.5e-09
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHH.HHTTHHHHHHHH CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwri.lidsdrlwcksi 47
                + ++LP +vlr+IL  L+ +d+l++ rVS++++  lid+d+ w++++
  CDO70002.1  3 SVLSLPYDVLREILTGLSAVDVLSFLRVSRRLYYpLIDDDSTWHTFC 49
                5689***************************9865666666666665 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.7   3.1e-08   0.00019       2      47 ..       5      50 ..       4      51 .. 0.93
   2 ?   -2.2   0.4      0.69   4.1e+03      28      38 ..     243     253 ..     242     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.1e-08
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47
                ++LP ++L +I+  L++ d l+  +V+rr +    d+ + W++ + 
  CDO70002.1  5 LSLPYDVLREILTGLSAVDVLSFLRVSRRLYYPLIDDDSTWHTFCA 50
                68*****************************9998888*****995 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.69
  F-box-like  28 CrrWrrvaldt 38 
                 ++rW++  +d+
  CDO70002.1 243 SSRWYDSWSDH 253
                 689**987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2974.09
//
Query:       CDO70003.1  [L=347]
Description: hypothetical protein BN946_scf184354.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   21.5   1.9      0.073   12.8   0.0    2.4  2  zf-RING_11  RING-like zinc finger
  ------ inclusion threshold ------
      0.014   15.7   0.5        2.9    8.3   0.2    2.4  2  zf-RING_2   Ring finger domain


Domain annotation for each model (and alignments):
>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.9   0.00048       4.3       2      11 ..     243     252 ..     242     256 .. 0.86
   2 !   12.8   0.0   8.1e-06     0.073      13      26 ..     316     329 ..     310     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00048
  zf-RING_11   2 CsICLeefkp 11 
                 C+ICL ef+ 
  CDO70003.1 243 CMICLCEFEA 252
                 ********84 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.1e-06
  zf-RING_11  13 qalfilpCsHtFHf 26 
                 q l++l+C+H++H+
  CDO70003.1 316 QPLRLLSCGHAYHV 329
                 899**********7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00032       2.9       2      15 ..     242     255 ..     241     260 .. 0.85
   2 ?    5.3   0.0    0.0028        25      13      28 ..     315     330 ..     308     346 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00032
   zf-RING_2   2 eCpICleelssads 15 
                 +C+ICl+e++ +++
  CDO70003.1 242 TCMICLCEFEAPRK 255
                 7********98765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0028
   zf-RING_2  13 adsvlllpCgHvfhre 28 
                 ++ ++ll CgH +h +
  CDO70003.1 315 PQPLRLLSCGHAYHVS 330
                 45566779******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2475.87
//
Query:       CDO70004.1  [L=221]
Description: hypothetical protein BN946_scf184354.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-66  223.1   0.0    2.3e-66  222.7   0.0    1.1  1  Pam17     Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   0.0   1.3e-70   2.3e-66       3     163 ..      54     214 ..      50     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.7 bits;  conditional E-value: 1.3e-70
       Pam17   3 sssesssaaakeeekkltwneffklrkkrrrielvasivtallglllgaavlstleidptqqilglDplvvlglatlasgalGwllGpvlgsavfklln 101
                 s+++ +++ +++e+++l w e++++rk++rr+e++ +i+t+++g+++g++++ +le+dpt++i+ +Dp++v+g+atl++++lG+l+Gp++gs++++l++
  CDO70004.1  54 SATKGNAQPTQTEKETLPWGEYLAIRKRKRRWETALTIPTTIGGFFAGLSYFGNLEMDPTKPIFNIDPMFVYGAATLGCAGLGYLIGPIIGSTIWRLTH 152
                 44555667788999************************************************************************************* PP

       Pam17 102 rkklkqleekekeFlerikknRvdpssqsvsnpvpDYYGekigslkdYrqWLrdqrafnrka 163
                 r+ ++ +e+++keF+++i knRvdp++qs++npvpDYYGekigsl+dYrqWLrdq +f++ka
  CDO70004.1 153 RRLMRLIEQRDKEFYQHIVKNRVDPTAQSATNPVPDYYGEKIGSLHDYRQWLRDQSKFRKKA 214
                 ************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1554.10
//
Query:       CDO70005.1  [L=398]
Description: hypothetical protein BN946_scf184354.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.083   12.8   2.0        0.2   11.6   2.0    1.7  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.0   1.1e-05       0.2       3      31 ..      10      40 ..       9      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
  F-box-like  3 rLPdEiLlqIFsyL.pps.dLlrlalVCrrW 31
                +LP+E++ +  +yL ++  +L +++l Cr W
  CDO70005.1 10 SLPPELCDYTIDYLwDDIeSLRACSLACRAW 40
                8*************975548888******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2973.47
//
Query:       CDO70006.1  [L=541]
Description: hypothetical protein BN946_scf184354.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-63  213.6   0.0    3.9e-63  212.9   0.0    1.3  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    5.4e-22   78.1   1.9    1.6e-21   76.6   1.9    1.9  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
     0.0051   16.0   0.9      0.012   14.8   0.1    1.8  2  NB-ARC         NB-ARC domain
  ------ inclusion threshold ------
       0.03   14.2   0.1      0.063   13.2   0.1    1.5  1  RsgA_GTPase    RsgA GTPase
      0.034   14.6   0.0       0.35   11.3   0.0    2.4  2  AAA            ATPase family associated with various cellular
      0.037   13.9   0.0      0.076   12.9   0.0    1.4  1  NACHT          NACHT domain
      0.043   14.2   0.1       0.14   12.6   0.1    1.9  1  AAA_16         AAA ATPase domain
      0.059   13.3   0.0       0.13   12.1   0.0    1.5  1  ATPase_2       ATPase domain predominantly from Archaea
      0.067   12.5   0.1       0.11   11.8   0.1    1.4  1  ATPase         KaiC
      0.083   13.2   0.7       0.31   11.4   0.1    2.0  2  AAA_19         AAA domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   2.2e-66   3.9e-63       1     213 []     197     415 ..     197     415 .. 0.96

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 2.2e-66
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS..EEEEEEESEEHHHHHHHHHHCHHSS.....GGGGEEEEEEETTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsdd..aiiyvgiGergnevaevleefpegt.....imkrtvlvantsnepvaareasiy 91 
                  Gi+v+D+l p+++G++++++g++gvGktv++q+l+++  +++   +i++g+Ger++e +++++e+ e++       +++ lv+ ++nep+ ar ++++
   CDO70006.1 197 GIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAHggFSIFCGVGERTREGNDLYHEMIETGvinlkGDSKVALVFGQMNEPPGARARVAL 294
                  99**********************************98887457***********************7744333556********************* PP

                  HHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSS CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  92 tgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitd 188
                  tg+t+AEyfrd +g++vll++d+++r+++A  e+s++lg++p++ gy+++l +++  ++ER++++  ++Gs+t+v+av+++++D++dp + +t++++d
   CDO70006.1 295 TGLTIAEYFRDeEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLSTDMGGMQERITTT--KKGSITSVQAVYVPADDLTDPAPATTFAHLD 390
                  ***********9*****************************************************..89***************************** PP

                  EEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 189 gfivLdkklaqrkhfPainvlvSvS 213
                  +++vL++++a+ +++Pa+++l S S
   CDO70006.1 391 ATTVLSRSIAELGIYPAVDPLDSKS 415
                  *********************9987 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   1.9   9.1e-25   1.6e-21       3      69 .]      74     140 ..      72     140 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 9.1e-25
                    EEETTEEEEESSTSCETCTTEEEEECCET..CSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   3 qviGpvvdvefgigrlpgiynalevelve..fgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                     viG+vvdv+f+ ++lp i+nalev   +  +g+l+l+va +lge++Vr+i+m++t+Gl+rG++V++TG
     CDO70006.1  74 TVIGAVVDVQFDTDNLPPILNALEVV--DfhGGRLVLEVAAHLGENSVRTIAMDGTEGLVRGQKVVDTG 140
                    69************************..6448************************************9 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.7e-06     0.012      23      55 ..     213     245 ..     199     272 .. 0.88
   2 ?   -1.1   0.1      0.49   8.8e+02      61     101 ..     436     475 ..     423     477 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEE CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFdsva 55 
                 ++l G +GvGKt+l+++ +n+ ++ +g F ++ 
  CDO70006.1 213 IGLFGGAGVGKTVLIQELINNVAKAHGGFSIFC 245
                 799******************999999998764 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.49
                 SXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHCC CS
      NB-ARC  61 ktdkseeiletilkeLslseddleekeeveslkrklvrlLl 101
                 k  + ++ l++i++ L+  e   e k +ve ++rk++r++ 
  CDO70006.1 436 KILQDYKSLQDIIAILGMDELSEEDKLTVE-RARKIQRFMS 475
                 333444445557777777766666666666.7888887775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.5e-05     0.063      89     148 ..     200     259 ..     185     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                  THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEE CS
  RsgA_GTPase  89 gleelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavelle 148
                   ++ l+++ ++  + l G  GvGK+ Li +l+++   + g  s   g G  T     l++
   CDO70006.1 200 VVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAHGGFSIFCGVGERTREGNDLYH 259
                  56667888888888899***********************99999999999988777776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.35       3      74 ..     215     325 ..     213     337 .. 0.67
   2 ?   -0.0   0.0      0.62   1.1e+03      43      73 ..     431     459 ..     395     482 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                 EESSTTSSHHHHHHHHHHHH.THE...........................EEEEETTTCSSS..............STTHHHHHHHHHHHHHHHTSTS CS
         AAA   3 lyGppGtGKTllakavakel.gve...........................fleisgsellsk..............yvgesekkirelfkeakekakp 59 
                 l+G  G+GKT l++ +++++ +++                           +++++g + +                 v  +   i+e+f++ +e +  
  CDO70006.1 215 LFGGAGVGKTVLIQELINNVaKAHggfsifcgvgertregndlyhemietgVINLKGDSKV-AlvfgqmneppgaraRVALTGLTIAEYFRD-EEGQ-D 310
                 89*****************642324444444555555555555555555554444444444.157777777777777888888889999988.4444.5 PP

                 EEEEEETGGGHHHHH CS
         AAA  60 silfiDEidalaksr 74 
                 + lfiD+i +++++ 
  CDO70006.1 311 VLLFIDNIFRFTQAG 325
                 999999998776665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHTSTSEEEEEETGGGHHHH CS
         AAA  43 ekkirelfkeakekakpsilfiDEidalaks 73 
                 +  +++++++ k+ +   i+ i  +d+l ++
  CDO70006.1 431 ATAVQKILQDYKSLQ--DIIAILGMDELSEE 459
                 556778888888877..55555555555444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.076       6      50 ..     216     255 ..     213     291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                 EC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-. CS
       NACHT   6 qGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgn 50 
                  G aG+GKT+L+q+l+   a+ +       +++f  ++e++r+gn
  CDO70006.1 216 FGGAGVGKTVLIQELINNVAKAH-----GGFSIFCGVGERTREGN 255
                 699*****************998.....35777777777777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.6e-05      0.14      27      58 ..     213     245 ..     199     342 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.6e-05
      AAA_16  27 vllsGesGvGKsslvrellralekdggif.lrg 58 
                 + l G +GvGK+ l++el + + k++g f + +
  CDO70006.1 213 IGLFGGAGVGKTVLIQELINNVAKAHGGFsIFC 245
                 557899******************988885433 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.3e-05      0.13      25     136 ..     215     327 ..     204     343 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-05
    ATPase_2  25 iYGpegsGKtaLlkeiienl.edkdkyviyyialreesisk..ldefie....eeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkk 116
                 ++G  g+GKt L++e+i+n  + ++   i+    ++ ++ +  + e+ie    + + ++k++ ++g+  +   +      + + +   ++ +     ++
  CDO70006.1 215 LFGGAGVGKTVLIQELINNVaKAHGGFSIFCGVGERTREGNdlYHEMIEtgviNLKGDSKVALVFGQMNEPPGA------RARVALTGLTIAEYFRDEE 307
                 6999***************9566666788876666554433226777666666555555555555444444444......2344445555555555577 PP

    ATPase_2 117 gkkiiiiiDelqklidlgln 136
                 g+ + ++iD +++  + g++
  CDO70006.1 308 GQDVLLFIDNIFRFTQAGSE 327
                 77788888888887765554 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.3e-05      0.11       2      72 ..     195     266 ..     194     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenakslGw 72 
                 +tgI+  D +    + +g  + + G++G GKt++ ++ + + a+  g   +f  v e+    +dl++++ + G+
  CDO70006.1 195 ETGIKVVDLLA--PYARGGKIGLFGGAGVGKTVLIQELINNVAKAHGGFSIFCGVGERTregNDLYHEMIETGV 266
                 68999999885..8999999************************************999888888888877776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00017      0.31       9      38 ..     209     238 ..     203     246 .. 0.84
   2 ?   -0.9   0.0       1.1   1.9e+03      69     116 ..     383     461 ..     349     474 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 + + + + +G+G GKT ++++ ++ + +++
  CDO70006.1 209 RGGKIGLFGGAGVGKTVLIQELINNVAKAH 238
                 56678899***************9988876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
      AAA_19  69 atTiHrlal.................................ldfddlltealelleeaeeekklqeee.llivDEfqdvde 116
                 atT+ +l                                    +  d  t   ++l+   + k lq+   +l  DE ++ d+
  CDO70006.1 383 ATTFAHLDAttvlsrsiaelgiypavdpldsksrmldprivgQEHYDVATAVQKILQ---DYKSLQDIIaILGMDELSEEDK 461
                 666666644555555556666666666655555555555554222223333333333...2344444444666777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4011.73
//
Query:       CDO70007.1  [L=1697]
Description: hypothetical protein BN946_scf184354.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-26   93.3   0.0    1.3e-21   76.8   0.0    2.8  2  SNF2_N        SNF2 family N-terminal domain
      6e-12   45.9   0.0    1.3e-11   44.8   0.0    1.6  1  GATase_6      Glutamine amidotransferase domain
    1.5e-09   37.8   0.0    3.3e-09   36.7   0.0    1.6  1  GATase_7      Glutamine amidotransferase domain
    1.9e-09   37.9   0.0      6e-09   36.2   0.0    1.9  1  Helicase_C    Helicase conserved C-terminal domain
    2.7e-09   36.7   0.1    5.2e-09   35.8   0.1    1.5  1  Pribosyltran  Phosphoribosyl transferase domain
    0.00027   19.9   0.0    0.00064   18.7   0.0    1.5  1  GATase_4      Glutamine amidotransferases class-II
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.64    9.4   0.0    2.1  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0     5e-25   1.3e-21       1     160 [.     825    1086 ..     825    1090 .. 0.73
   2 !   14.6   0.0   3.8e-06    0.0098     193     271 ..    1083    1201 ..    1080    1206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 5e-25
                  HHHHHHHHH.......................................HHHHHTT--EEE---TTS--HHHHHHHHH.................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
      SNF2_N    1 yQkeavkwmlkReqnlqdleaalrkllktldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqr................. 80  
                  yQ++ v+ m+ Re +   +e++l+   ++ +g+  +v+pat e+++e + +++  +GGiL++e G GKTv++l+l++a                   
  CDO70007.1  825 YQQQTVAAMVARETSCSAIEHPLYLPVEGVNGKIFFVQPATMEIITERP-RVSAAPGGILCEELGTGKTVMILSLVMATMdqiskpeevwyeertpl 920 
                  9******************************************999986.67889**********************77666666666666666666 PP

                  .....................................................HHTTTS---.......S-.......................... CS
                  .....................................................xxxxxxxxxxxxxxxxxx.......................... RF
      SNF2_N   81 .....................................................akeekdkekkrkdtlagp.......................... 98  
                                                                                                                   
  CDO70007.1  921 tplafrkfrtppvksirdklvgakksnlnedqpfpslvetllhkcrvvpedvgL----------------Htpetqemlerhrlfklwranvpfylq 1001
                  666665555555555555555555555555555555555555555555555550................055555555555555555555555555 PP

                  .............................EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHH CS
                  .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   99 .............................tLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvl 160 
                                               tLi+vP +l +qW +ei +h+ +  lrv+  ++++         ap l++d+d+v+ + + +
  CDO70007.1 1002 fhppseeltgrrarqqgssgprvmylttaTLIIVPDNLRQQWASEILKHCTDI-LRVYLVDDKR-----GLPDAPVLATDFDIVLMSHSQY 1086
                  55555555555555555555555555555**********************99.9*******75.....3345899999*****9987765 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.8e-06
                  TSHHHHHHHH---S-EEEE-S--SSS...................................-HHHHH.HHHHHH-TTTT--.HHHHHHHTHHHHH.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxx.. RF
      SNF2_N  193 tskaaeavskLstsnrwiltGTPiqn...................................sledly.gLlkfLreepfge.kqtfdkllqrpie.. 250 
                  +s+ a   + Ls ++rw++tGTP+ n                                   +l+ +  +L +fLr+ pf    + f++l+++p    
  CDO70007.1 1083 HSQYAHLTKALSVERRWVVTGTPTTNllginlgtglellypeedetahstsqrawpseqrdDLRKIGnMLGQFLRMLPFAAdSKAFSTLVSDPLFkp 1179
                  5677788889****************87776666666666666666666666666666555555555333356666666655556666666665533 PP

                  .HHHHHHHHHHHTT-STTEE-- CS
                  .xxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  251 .aqaekgrsrLlqllqrlmlrr 271 
                     +   +  L+q+++++m+r+
  CDO70007.1 1180 gGPSSWDVDVLVQVMSSVMVRH 1201
                  3233334445666666666665 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.1e-15   1.3e-11      11     133 ..     156     301 ..     139     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 5.1e-15
    GATase_6  11 edevalaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall....eelG.............eevler 91 
                 + +++++HvR  + g +++++aqPf +++  +++++hNG   n  +l   + a + ++++++sD+e+ll+++    +++G               ++++
  CDO70007.1 156 G-GMGVGHVRYPTAGSSNHAEAQPFyVNSPYGIVMAHNGNLINTSSLLHYMDAVAHRHINTTSDSELLLNIFadnlQKTGkfrineediftavGGLMQQ 253
                 2.499************99999***9999999*********************99999************99999988889999974455443333456 PP

    GATase_6  92 lrGmfafaiwdkrentlilardrlgvkplyyavd.......esglafas 133
                 ++G++a +++  +  ++i  rd  g++pl ++         ++  +fas
  CDO70007.1 254 VKGAYACVAML-AGFGIIAFRDPNGIRPLGMGWRkalggggGKDWLFAS 301
                 77766665444.4445555599999999887766555555555555555 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.3e-12   3.3e-09       9     118 ..     172     303 ..     162     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.3e-12
    GATase_7   9 seagaQPmvssedgrlvivfnGeiyNykelreeLeakgh.rfrtksDtevllallea................ewgeealerlnGmfAfaiwdeeekrl 90 
                  +a+aQP++ ++   +v+++nG + N+++l + + a  h +++t+sD+e+ll+++++                  +  ++++++G +A + + +    +
  CDO70007.1 172 NHAEAQPFYVNSPYGIVMAHNGNLINTSSLLHYMDAVAHrHINTTSDSELLLNIFADnlqktgkfrineedifTAVGGLMQQVKGAYACVAMLAGF-GI 269
                 56899****977777********************9887356*************99*************999899999*********99998877.8* PP

    GATase_7  91 llaRDrlGikPLyygedk......gdallfaSel 118
                 ++ RD+ Gi+PL +g++k      g+ +lfaSe 
  CDO70007.1 270 IAFRDPNGIRPLGMGWRKalggggGKDWLFASES 303
                 *****************99987776799999996 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.3e-12     6e-09       2     111 .]    1470    1581 ..    1469    1581 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.3e-12
                  HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C    2 kleallellkleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdl 93  
                  kl+++l+++ +  +++k lif+++  +le   ++ e     ++k++ + g+ +  er+ +++ f  ++ ++ +L+  + ++rG+++ +++ Vi++++
  CDO70007.1 1470 KLDYILKEVLTYGSEEKFLIFSESPLTLE---YVAEALdmcKVKYLSFSGRHSRAERQSMITTFEtSDLYRvMLLELRQGARGLNLVSASRVIFCEP 1563
                  66777777548899**************5...4433334569**********************9778999999*********************** PP

                  SSSHHHHHHHHTTSSSTT CS
  Helicase_C   94 prnvtsyiqriGRtgRag 111 
                   ++ +   q+i R++R+g
  CDO70007.1 1564 VWKADVESQAIKRVHRIG 1581
                  ****************97 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1     2e-12   5.2e-09       8     123 ..     367     489 ..     360     512 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2e-12
                   ---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE..............EE----TTSEEEEE-SEE CS
  Pribosyltran   8 npaildavarlaaeileeyngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes......rlledpagkkVliVDDil 97 
                    +a+ da a+  ++ l++ + + dvv++++  + + a  la++L +p+     k +y + +     +++   +       ++ ++ gk VliVDD +
    CDO70007.1 367 RMAMGDALADEVKRVLDNHKLTVDVVIPVPDTSRVAALNLAQKLQLPYReGFIKNRYVGRTFIMPGQQMRRKNvrrklnAMALEFSGKNVLIVDDSI 463
                   5555666666666666666666**********************999664777777776665544444433336677999***************** PP

                   SSSHHHHHHHHHHHCC-BSEEEEEEE CS
  Pribosyltran  98 dtGgTllaalelLkekgpeevriavl 123
                     G+T +++++  k++g+++v++a  
    CDO70007.1 464 VRGTTSKEIIQMAKDVGAKKVIVASC 489
                   *********************99864 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.5e-07   0.00064      75     167 ..     160     255 ..     151     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.5e-07
    GATase_4  75 vaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl....egrfePvGsT.DsElafCelleelasrfekaepsaeeleralaelakeia 167
                 v H+R  t G+ + ++++pF  +     +++AHnG+l + +  l    +  ++ + +T DsEl + ++ ++l+++  k + + e++++a+  l+++++
  CDO70007.1 160 VGHVRYPTAGSSNHAEAQPFYVN-SPYGIVMAHNGNLINTSSLLhymdAVAHRHINTTsDSELLLNIFADNLQKTG-KFRINEEDIFTAVGGLMQQVK 255
                 88******************865.45679********8755555455544566676656**************999.568999999999999999876 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6     4e+03      26      47 ..     371     392 ..     359     403 .. 0.77
   2 ?    9.4   0.0   0.00025      0.64      11      91 ..     448     532 ..     442     577 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
                   HHHHHHHHHHHHHHTTSEEEEE CS
  AP_endonuc_2  26 sdeelrelrkaldelglriasl 47 
                    d+ ++e+++ ld + l++ ++
    CDO70007.1 371 GDALADEVKRVLDNHKLTVDVV 392
                   467899**********998665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00025
                   EEEEECCTCSHHHHC.....HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS..HHHHHHHHHHHHHHHHHHTBSEEEEEB CS
  AP_endonuc_2  11 gvElfgrdlvpvsel.....sdeelrelrkaldelglriaslslftrfgypdederear..reesvdalkraielaaaLGapllvlhp 91 
                   + E++g++   v++      + +e+ +++k + +  + +as  +++r+ ++          ree v++ +++ e+a+a+Ga+l+++++
    CDO70007.1 448 ALEFSGKNVLIVDDSivrgtTSKEIIQMAKDVGAKKVIVASCAPPIRYVNVYGI---DMpsREELVAYNRNEEEIARAIGADLVIFQT 532
                   55666666666666677677888999999999999999**********998875...22467777*********************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.49
# Mc/sec: 10475.92
//
Query:       CDO70008.1  [L=317]
Description: hypothetical protein BN946_scf184354.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.2e-116  386.4   0.8   8.8e-116  386.1   0.8    1.0  1  Septin        Septin
    1.8e-08   34.5   0.2    7.7e-08   32.4   0.1    2.1  1  MMR_HSR1      50S ribosome-binding GTPase
    2.9e-06   26.8   0.0    5.8e-06   25.8   0.0    1.5  1  AIG1          AIG1 family
    3.8e-06   26.9   0.1    0.00014   21.8   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    2.8e-05   23.7   0.7     0.0023   17.5   0.1    2.4  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    6.8e-05   23.0   0.6       0.11   12.5   0.2    2.4  2  Dynamin_N     Dynamin family
    0.00064   19.0   0.0     0.0012   18.0   0.0    1.4  1  NB-ARC        NB-ARC domain
     0.0017   18.7   0.0     0.0036   17.7   0.0    1.9  1  AAA_16        AAA ATPase domain
     0.0023   17.3   0.0     0.0039   16.6   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0034   16.5   0.0     0.0066   15.5   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
     0.0047   16.5   0.1      0.097   12.2   0.0    2.4  2  AAA_7         P-loop containing dynein motor region
     0.0088   16.6   2.0      0.014   15.9   2.0    1.7  1  ABC_tran      ABC transporter
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.029   14.6   0.0    1.7  1  AAA_22        AAA domain
      0.014   14.5   0.2      0.042   12.9   0.0    1.8  2  IIGP          Interferon-inducible GTPase (IIGP)
      0.021   14.2   0.2       0.37   10.1   0.0    2.2  2  Gtr1_RagA     Gtr1/RagA G protein conserved region
      0.039   13.7   0.0      0.075   12.8   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.048   13.7   0.4       0.56   10.2   0.1    2.7  2  AAA_14        AAA domain
       0.11   12.7   0.0       0.23   11.7   0.0    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.12   12.4   0.4       0.41   10.7   0.1    1.9  2  DUF87         Helicase HerA, central domain
       0.29   11.6   1.8       0.66   10.4   1.7    1.9  1  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.1   0.8  9.8e-119  8.8e-116       1     278 [.      31     307 ..      31     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 386.1 bits;  conditional E-value: 9.8e-119
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylre 99 
                 +g++f+++vvG+ glGk+tlint+f+++li+++    + e  ++t+ei+  ++vi e+gv+l+l+++Dtpg+Gd+++n+++w+pi++yi++q+++ylr+
  CDO70008.1  31 RGFQFNVIVVGQTGLGKSTLINTIFASHLIDSKGRMAPDEPVRQTTEIHPVSHVIVENGVRLRLNIVDTPGYGDQINNENCWDPIIKYIKDQHSAYLRK 129
                 69************************************************************************************************* PP

                 CTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHH CS
      Septin 100 esklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsek 197
                 e +++R ++i+D+R+H+clyfi+Ptgh l+p+dv +mkklse vn++PviaKaD+lt eE ++fK++ireel  ++i++y  +d+ee+++ee  el+e+
  CDO70008.1 130 ELTAQRdRHIQDTRIHCCLYFINPTGHSLRPIDVIVMKKLSEVVNVVPVIAKADSLTVEERDAFKQRIREELVYHNIRLYP-FDTEENDEEE-IELNET 226
                 ******999************************************************************************.9999999666.9***** PP

                 HHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXXX CS
      Septin 198 lkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklkek 278
                 +++ +Pfa+vgs++++  +gk vrgRk +WGvv+ve+e+h++F++Lr++l+++hl+dL+e+t++++Ye +Rs++l +lke+
  CDO70008.1 227 IRSMIPFAVVGSERTVIVDGKPVRGRKNRWGVVNVEDERHCEFVQLRNFLTRSHLQDLIETTAQIHYEAFRSKQLLALKEQ 307
                 ***************************************************************************998876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   8.6e-11   7.7e-08       1     101 [.      36     169 ..      36     244 .. 0.63

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 8.6e-11
                 EEEEEESTTSSHHHHHHHHHT........STEEESSSTTSS.SSEEEEEEEETT..EEEEEEECGGC................SS...HHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg........ekaivsdkpgtT.rdinegrvklkg..keielvDtpGl................ie...gaseekglgka 69 
                 +v++vG++  GKStLin+++         + a  +   +tT ++++ + + ++g   ++++vDtpG                 i+   +a  +k+l+ +
  CDO70008.1  36 NVIVVGQTGLGKSTLINTIFAshlidskgRMAPDEPVRQTTeIHPVSHVIVENGvrLRLNIVDTPGYgdqinnencwdpiikyIKdqhSAYLRKELTAQ 134
                 589****************9733333211223333333555223344434344434679*******544445555555443322211122222233333 PP

                 HHHHHC...TSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1  70 flalee...adlillvvdaseeklkpldeeleell 101
                   ++++    +  l+ ++ + ++l+p+d  + + l
  CDO70008.1 135 RDRHIQdtrIHCCLYFINPTGHSLRPIDVIVMKKL 169
                 33333332245555555544445666655555544 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.4e-09   5.8e-06       2      64 ..      36     107 ..      35     126 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.4e-09
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTT...S---SS-E..EEEE..EETT..EEEEEEE--SCCCTTC CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsa...qsvtkkcq..kksr..twdg..kkinViDTPglfdlsv 64 
                 ++++vG+tg GkS+ +N+i  ++  +sk +    ++v ++ +   +s   +++g   ++n++DTPg  d  +
  CDO70008.1  36 NVIVVGQTGLGKSTLINTIFASHLIDSKGRMapdEPVRQTTEihPVSHviVENGvrLRLNIVDTPGYGDQIN 107
                 89**************************9862224676655411334433566655679*******866543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.6e-07   0.00014      99     160 ..      34     101 ..       3     105 .. 0.64
   2 ?    2.7   0.0      0.12   1.1e+02      36      80 ..     162     209 ..     150     238 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.6e-07
                  TSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEE.TTTEE.....EESS-S CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellel.aeggl.....liDtPG 160
                  +  +++vGq+G GKStLin++  ++ +  +   + ++  + TT    + ++  e+g+     ++DtPG
   CDO70008.1  34 QFNVIVVGQTGLGKSTLINTIFASHLIDSKGRMAPDEPVRQTTEIHPVSHViVENGVrlrlnIVDTPG 101
                  3356889**************99877777766677777777776554444312233222333777777 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
                  HHHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEE CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeee...eleelkeelealgyevl 80 
                  d +++   ++ +++v v+ K+D l+ ee     ++++eel   +++++
   CDO70008.1 162 DVIVMKKLSEVVNVVPVIAKADSLTVEErdaFKQRIREELVYHNIRLY 209
                  5555566677789999******99999944322233333333333333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.6e-06    0.0023       5      82 ..      36     104 ..      34     110 .. 0.75
   2 ?    4.3   0.1     0.028        25     120     165 ..     170     214 ..     161     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSC..SSCEEEEEETTCSSEEEEEEEESSSGG CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiT..iksaaisleketkkylinliDtPGHvd 82 
                 n++++g +  GK+TL+ ++ +++ ++sk +           +++E  r+ T    ++++ +e ++ + ++n++DtPG  d
  CDO70008.1  36 NVIVVGQTGLGKSTLINTIFASHLIDSKGR----------MAPDEPVRQTTeiHPVSHVIVE-NGVRLRLNIVDTPGYGD 104
                 99******************8887777722..........3566777766521234555555.9*************877 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.028
                 HTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT CS
    GTP_EFTU 120 kegvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekge 165
                 +e v+++ +i K+D l  +e +  ++ ++++l  + ++++ y++++e
  CDO70008.1 170 SEVVNVVPVIAKADSLtVEERDAFKQRIREEL--VYHNIRLYPFDTE 214
                 56789***********8777888888888888..5555555555554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   0.00013      0.11       1      24 [.      37      60 ..      37      75 .. 0.84
   2 !    8.5   0.0    0.0021       1.9      99     128 ..      90     122 ..      69     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
                EEEEEBTTTTHHHHHHHHHTS--S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedil 24
                ++vvG++  GKS+++n +  +++ 
  CDO70008.1 37 VIVVGQTGLGKSTLINTIFASHLI 60
                79****************988854 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0021
                 TS-SEEEEE---B-SSSGTTS..HHHHHHH.ST CS
   Dynamin_N  99 lvkgltlvDlPGldsvnkrdq..elvkeyi.kk 128
                  + +l++vD+PG+ ++ +++   + + +yi ++
  CDO70008.1  90 VRLRLNIVDTPGYGDQINNENcwDPIIKYIkDQ 122
                 56789********99777666688899999444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06    0.0012       5      43 ..      21      57 ..      18      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  5 vekviekLlekdelqslvvalvGmgGvGKttlakqilnk 43
                 +++ +kLl k ++q + v +vG  G+GK+tl++ i+ +
  CDO70008.1 21 TQQIEHKLL-KRGFQ-FNVIVVGQTGLGKSTLINTIFAS 57
                578999***.999*9.999*****************988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.1e-06    0.0036       9      62 ..      21      73 ..      14     245 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.1e-06
      AAA_16  9 leqL.lsalervrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdq 62
                ++q+ + +l+r  +    +v+++G+ G GKs+l+++++ +   d +g  +  + ++
  CDO70008.1 21 TQQIeHKLLKRGFQ---FNVIVVGQTGLGKSTLINTIFASHLIDsKGRMAPDEPVR 73
                55664455554444...4799**************999754444245554444444 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.3e-06    0.0039      23      64 ..      16      59 ..       3      64 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.3e-06
                  EEETTS-EEEEEGGGS-...SEEEE--TTSSHHHHHHHHHHHHH CS
  FtsK_SpoIIIE 23 gkeisgnplvldlkkma..shllvaGatgsGKStalntLilSla 64
                  g++ + + +++ l k     +++v+G tg GKSt +nt+ +S +
    CDO70008.1 16 GFDTITQQIEHKLLKRGfqFNVIVVGQTGLGKSTLINTIFASHL 59
                  55555555555554444678*******************99966 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.4e-06    0.0066     101     151 ..       7      56 ..       3      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.4e-06
       T2SSE 101 keltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallk 151
                 +e++ + ++   + +++i++ l k    + +++v G Tg GK+tl++++ +
  CDO70008.1   7 EEIRANSYVGFDTITQQIEHKLLKR-GFQFNVIVVGQTGLGKSTLINTIFA 56 
                 5677788888888899998877666.69*******************9864 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011     0.097      33      56 ..      34      58 ..      17      67 .. 0.77
   2 ?    1.7   0.0      0.18   1.6e+02     125     161 ..     115     157 ..      94     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
       AAA_7 33 kkpvllvGptGtGKtviikd.llkk 56
                + +v++vG+tG GK+++i++ + ++
  CDO70008.1 34 QFNVIVVGQTGLGKSTLINTiFASH 58
                5689***************955554 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.18
       AAA_7 125 llRqlldyggwYdrkklefk...eikdvqlvaam...gppggg 161
                 +++ + d++  Y rk+l+ +   +i+d+ + ++    +p+g +
  CDO70008.1 115 IIKYIKDQHSAYLRKELTAQrdrHIQDTRIHCCLyfiNPTGHS 157
                 6888999********986653448****999985222566655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.0   1.5e-05     0.014      14      43 ..      37      78 ..      34     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-05
                EEEEESTTSSHHHHHHHHT.TSS--SEEEE...........E CS
                xxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...........x RF
    ABC_tran 14 vaivGenGaGKStLlklla.gllkpteGei...........l 43
                v +vG++G GKStL++++   +l + +G++            
  CDO70008.1 37 VIVVGQTGLGKSTLINTIFaSHLIDSKGRMapdepvrqtteI 78
                679*************98615566788888444443333330 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.3e-05     0.029       8      37 ..      37      66 ..      34      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee 37
                ++v+G++G GK+tl+++++ ++ +++k ++
  CDO70008.1 37 VIVVGQTGLGKSTLINTIFASHLIDSKGRM 66
                689****************99987766555 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-05     0.042      34      80 ..      33      81 ..      15     108 .. 0.70
   2 ?   -1.2   0.0      0.89     8e+02     233     264 ..     182     212 ..     126     230 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
                --EEEEEEESTTSSHHHHHHHHTT..--TTSTTS--SSCHSHHTS-EEE CS
        IIGP 34 aklkiavtGdsGnGkssFinaLRl..iGheeedsAptGvvettkkrtpY 80
                 + ++ v+G++G Gks+ in++    + + +   Ap   v+ t + +p 
  CDO70008.1 33 FQFNVIVVGQTGLGKSTLINTIFAshLIDSKGRMAPDEPVRQTTEIHPV 81
                5689****************98421133344445555666666655555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.89
                 SHHHHHHHHHHHHHHHHHHHHHT--BSS-CCC CS
        IIGP 233 tdkvieekreslkqkialealkaalvsiipll 264
                 +d+   e r+ +kq+i +e +  + + + p+ 
  CDO70008.1 182 ADSLTVEERDAFKQRIREELVYHN-IRLYPFD 212
                 233333344455555555544444.3555554 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00042      0.37       2      64 ..      37     108 ..      36     122 .. 0.71
   2 ?    1.7   0.2      0.15   1.3e+02     106     141 ..     167     202 ..     161     228 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00042
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgati.........dveksevrflgnltlnlwDcgGqeafvee 64 
                 v+ +G+ g GK+++ + iF+  l     r++             v++  v++   l ln++D +G  + +++
  CDO70008.1  37 VIVVGQTGLGKSTLINTIFASHLIDSKGRMAPDEpvrqtteihPVSHVIVENGVRLRLNIVDTPGYGDQINN 108
                 7899***************998877776665433223333322344444555556899*******9887766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.15
   Gtr1_RagA 106 rqyspeakvfvlihKmDliqedereeifeerkeeir 141
                 ++ s+ ++v   i K D ++ +er+   ++++ee+ 
  CDO70008.1 167 KKLSEVVNVVPVIAKADSLTVEERDAFKQRIREELV 202
                 677888899999********9999999888777764 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.3e-05     0.075      24      42 ..      36      54 ..      19      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
      AAA_29 24 atlltGpsGsGKSTllDAi 42
                +++++G++G GKSTl+  i
  CDO70008.1 36 NVIVVGQTGLGKSTLINTI 54
                6899***********9655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00063      0.56       5      37 ..      37      67 ..      34     128 .. 0.65
   2 ?   -0.2   0.0       1.1   9.4e+02      23      58 ..     197     229 ..     191     245 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00063
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesilyin 37
                ++++G    GK+tl+++++ ++l+  +s   ++
  CDO70008.1 37 VIVVGQTGLGKSTLINTIFASHLI--DSKGRMA 67
                7999****************9994..4444444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      AAA_14  23 ikellvkkesilyinldderdkkladpekllelile 58 
                 i+e+l    +i  + +d+e++++++ +  l+e i++
  CDO70008.1 197 IREEL-VYHNIRLYPFDTEENDEEEIE--LNETIRS 229
                 44555.345556666666666554433..4555554 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.23       2      65 ..      37     101 ..      36     112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE..CGGSGGCTTBTTTTCEEEEEEEE-S CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltke..vtkikgvendkkvkkvklniWDtaG 65 
                 v++vG++g GK++l++ +  ++  +++  +   + ++++  ++ +++v  ++   +++lni Dt G
  CDO70008.1  37 VIVVGQTGLGKSTLINTIFASHLIDSKGRMAPDEPVRQTteIHPVSHVIVEN-GVRLRLNIVDTPG 101
                 89***************99988877776666655554430033334443333.3457778887766 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00046      0.41      28      49 ..      39      60 ..      29      66 .. 0.85
   2 ?   -1.8   0.0         3   2.6e+03      85     116 ..     282     316 ..     264     317 .] 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00046
       DUF87 28 ilgsTGsGKSntvavLleelle 49
                ++g+TG GKS+++  ++++ l 
  CDO70008.1 39 VVGQTGLGKSTLINTIFASHLI 60
                99*************9988665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
       DUF87  85 a..kdkelkinpwsldpeelldllee.ddkpaaav 116
                 +  ++++ +i++ +++ ++ll l e  + +p+aa+
  CDO70008.1 282 QdlIETTAQIHYEAFRSKQLLALKEQtNARPSAAA 316
                 13466778899999999999888888666666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   0.00074      0.66      23      52 ..      38      68 ..      29     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00074
      AAA_23 23 lItGpNGaGKTTildAikla.Lygetprlsr 52
                +++G++G GK+T+++ i    L   ++r+ +
  CDO70008.1 38 IVVGQTGLGKSTLINTIFAShLIDSKGRMAP 68
                679************9987535555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2132.46
//
Query:       CDO70009.1  [L=373]
Description: hypothetical protein BN946_scf184354.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00068   19.5   1.3    0.00068   19.5   1.3    2.0  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.3   3.8e-08   0.00068       3      43 ..       4      44 ..       2      49 .. 0.82
   2 ?   -3.5   0.0      0.57     1e+04      14      25 ..     141     152 ..     133     153 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.8e-08
  F-box-like  3 rLPdEiLlqIFsyL.pps.dLlrlalVCrrWrrvaldtplLWr 43
                 LP E+  q  ++L +++ +L ++++VCrrW   a+ t  L r
  CDO70009.1  4 KLPQELVDQAIDHLwNDRaSLRSCSRVCRRWLPSAR-T-HLFR 44
                69999999999999987779***********88884.3.4655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.57
  F-box-like  14 syLppsdLlrla 25 
                 sy+++ +Ll++a
  CDO70009.1 141 SYMDLHTLLSAA 152
                 788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2583.68
//
Query:       CDO70010.1  [L=399]
Description: hypothetical protein BN946_scf184354.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-30  106.7   0.0    1.3e-29  103.4   0.0    1.9  1  Pkinase      Protein kinase domain
    4.9e-05   22.8   0.0       0.15   11.4   0.0    2.9  3  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.14   12.0   0.8        1.2    9.0   0.1    2.4  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   2.2e-33   1.3e-29       1     264 []      29     393 ..      29     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 2.2e-33
                 EEEEEEEEEESSEEEEEEEETTTT...EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE........SSEEEEEEE--TTEB.HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketg...kivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee........kdelylvleyvegge.lad 87 
                 y+ l+klGeG +++   +++k+ +   +  A K++  + ++  + +   rE+++lk++ ++   +++  +++         ++l+lv+++ ++     +
  CDO70010.1  29 YTILRKLGEGVSSSSWLVRDKQGDlgyQYLAAKILTIDATERHE-TGQCRELEFLKEIASRDETQYLPLLRDsfieqgpkGKHLCLVQDLYSTSVsALR 126
                 78899**********99998876433377899999999877766.5899*********97777777777766677699999********9996632333 PP

                 HHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET....................................................T CS
     Pkinase  88 llerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide....................................................k 134
                 + +  ++l+   +++i++ ++e+l+ lH+++i+H D+K +N+L+ +                                                    +
  CDO70010.1 127 RSSPYKALPAYMVRNIVSMLVEALAQLHEMRIVHTDVKLDNLLFGNslypsddalshylqatppefegevdldgqkypivkpqpiphvykwntsafeaE 225
                 44477889*************************************88***************************************9999988877542 PP

                 TE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.....SHH.. CS
     Pkinase 135 ge..lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.....etkek 226
                     + ++D+G a+++ ++  + +  g +  +APE + ++++++ vD+W++G++ +ell g+ +f+ e+g+e  ++e d+l k++++ g          
  CDO70010.1 226 -TmiIYLVDLGNAQRAGEQP-TADCFGAPALRAPETILASDFGPGVDIWAVGCLTFELLVGRWLFHPEEGEE-WTEEDDHLAKMMELTGqhfpnS---- 317
                 .1579************998.99*******************************************666665.4445555777777777544321.... PP

                 .HHHTTS..........................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 227 lpeasei..........................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                                   ++a d+++ +l+ d k+R taeel++h +l
  CDO70010.1 318 -ML---QraqrrdeffddsgnlrripeliyvslesamenyklpgltedeIKKAADFIRACLRFDYKERATAEELKRHAFL 393
                 .11...1233456779999****************************99999*************************986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.4e-05      0.15       4     138 ..      32     172 ..      29     189 .. 0.74
   2 !    7.4   0.0   0.00039       2.3     171     200 ..     254     283 ..     226     309 .. 0.88
   3 ?   -0.1   0.0     0.075   4.5e+02     230     257 ..     362     389 ..     342     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE........SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct........keepllivteyvkgGdLlkfLr 93 
                   +klGeG  ++ +  + k + +   +  a K+l+ +ate++++  ++e++++k++  +   ++l +          k+++l++v ++ +  +++   r
   CDO70010.1  32 LRKLGEGVSSSSWLVRDK-QGDLGYQYLAAKILTIDATERHETGQCRELEFLKEIASRDETQYLPLLRdsfieqgpKGKHLCLVQDLYST-SVSALRR 127
                  567777777776666666.67777788899999999999999999999999999955444444444333334455455559999998765.4444444 PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse 138
                  ++  ++l    + +++  + ++++ L+++++vH d+   N L  +
   CDO70010.1 128 SSPYKALPAYMVRNIVSMLVEALAQLHEMRIVHTDVKLDNLLFGN 172
                  44566777778888999999*********************9864 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00039
                  GS-HHHHHHSEEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 171 WmapEslkekkftsksDvWsfGvllwEift 200
                    apE++ ++ f    D+W+ G l++E++ 
   CDO70010.1 254 LRAPETILASDFGPGVDIWAVGCLTFELLV 283
                  569************************985 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.075
                  SBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 230 cpeelyelmkkcweedpeeRptfselve 257
                    ++ +++++ c++ d +eR+t +el +
   CDO70010.1 362 EIKKAADFIRACLRFDYKERATAEELKR 389
                  44666789**************999875 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0033        20       3     108 ..      33     156 ..      31     157 .. 0.81
   2 ?    9.0   0.1    0.0002       1.2     149     181 ..     139     171 ..     116     182 .. 0.69
   3 ?   -2.7   0.0      0.77   4.6e+03     105     105 ..     346     346 ..     292     391 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0033
                 EEE--.SSCEEEEEEETT-....-EE....EEEE-TTS-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS....... CS
         APH   3 relsggasnrtylvttpag....ryv....lrrnpparaaeeirrevallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr....... 84 
                 r l+ g s+ ++lv +++g    +y+    l++ +++r +    re+++l+ +a ++   + P + +    ++ +g +  l++ +  +s++        
  CDO70010.1  33 RKLGEGVSSSSWLVRDKQGdlgyQYLaakiLTIDATERHETGQCRELEFLKEIASRDEtqYLPLLRDSFIEQGPKGKHLCLVQDLYSTSVSAlrrsspy 131
                 789999999999999999778896665555999999955555558999999999999989899999988888888888888888888888888888888 PP

                 .HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  85 .klsaaqlpellealgeflaalhqv 108
                  +l a   ++++  l+e+la+lh++
  CDO70010.1 132 kALPAYMVRNIVSMLVEALAQLHEM 156
                 77778889999999999999**987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvd 181
                  +++  +l + l+   +++++H D +++Nll+ 
  CDO70010.1 139 VRNIVSMLVEALAQLHEMRIVHTDVKLDNLLFG 171
                 44444444444444568**************97 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.77
                 H CS
         APH 105 l 105
                 l
  CDO70010.1 346 L 346
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2707.13
//
Query:       CDO70011.1  [L=539]
Description: hypothetical protein BN946_scf184354.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-19   68.0  13.1      0.003   18.3   0.4    6.6  6  WD40        WD domain, G-beta repeat
      3e-16   59.1   1.8      3e-16   59.1   1.8    2.5  3  F-box-like  F-box-like
    1.6e-11   43.8   0.6    1.6e-11   43.8   0.6    2.7  3  F-box       F-box domain
    1.5e-05   23.9   1.6       0.61    8.7   0.0    3.6  3  Nup160      Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.2e-06     0.023       8      38 .]     254     289 ..     245     289 .. 0.77
   2 !    9.7   0.6   0.00038       1.7       4      38 .]     296     330 ..     293     330 .. 0.62
   3 !   18.3   0.4   6.7e-07     0.003       2      38 .]     335     373 ..     334     373 .. 0.79
   4 !    6.8   0.0    0.0031        14      15      36 ..     390     405 ..     377     407 .. 0.74
   5 !    7.0   0.0    0.0026        11       9      38 .]     457     486 ..     451     486 .. 0.74
   6 !   13.7   0.4     2e-05     0.088       9      38 .]     499     527 ..     490     527 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.2e-06
                 ESS.SSEEEEE...EETTSSE.EEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtsla...fspdgaw.lasGsdDgtvriWd 38 
                  +H + +++l+   +++ g+  l++Gs+D+t+r Wd
  CDO70011.1 254 NAHtNTIYCLQlytYPDTGTQvLFTGSKDRTIREWD 289
                 589888****98874444444467***********8 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00038
                 EEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 lr+l+  H ssv s++++  g  l+s+s D+ v +W+
  CDO70011.1 296 LRVLEgVHeSSVLSICVH-RGI-LVSASSDHRVVVWN 330
                 566654787786655322.223.666666*******8 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 6.7e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEET...TSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsd...DgtvriWd 38 
                 ++l++++ H +sv +++f  d + l+s+s+   D+++r+Wd
  CDO70011.1 335 KPLKIIRDHvDSVLCVRF--DDHRLVSCSKvsgDRSLRLWD 373
                 78999****999****44..4444778865556*******9 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0031
                 EEEEETTSSEEEEEETTSEEEE CS
        WD40  15 slafspdgawlasGsdDgtvri 36 
                 +       ++++sGs D+++r+
  CDO70011.1 390 GY------PYVLSGSSDKHIRL 405
                 55......8999**99*****8 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0026
                 SSSS.EEEEEEETTSSEEEEEETTSEEEE.EE CS
        WD40   9 GHss.vtslafspdgawlasGsdDgtvri.Wd 38 
                 +H + v+s+a    + +++sGs+D tv+  Wd
  CDO70011.1 457 AHEDlVRSVA--LGSEFVVSGSYDFTVKQvWD 486
                 6755577773..2455699********98666 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 2e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 GH + + ++    d + ++s+++D+ + iWd
  CDO70011.1 499 GHtGRIFCV--GFDCTKIVSCGEDQRICIWD 527
                 996669999..556666899**********9 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.17   7.7e+02       7      24 ..      40      57 ..      39      60 .. 0.85
   2 !   59.1   1.8   6.6e-20     3e-16       4      48 .]      73     116 ..      70     116 .. 0.95
   3 ?   -3.8   0.1       2.9   1.3e+04      19      28 ..     355     364 ..     350     364 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.17
  F-box-like  7 EiLlqIFsyLppsdLlrl 24
                Ei  +I+  Lp s+L+ l
  CDO70011.1 40 EIAYKILATLPRSSLAVL 57
                9999*********99865 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 6.6e-20
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvlr 48 
                 LP+Ei l++FsyLp ++L  +alV+rrWr++a d  +LW+ l+l+
  CDO70011.1  73 LPPEISLHVFSYLPYQSLMTCALVSRRWRTLADDQ-SLWKSLCLS 116
                 9*******************************887.*******85 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.9
  F-box-like  19 sdLlrlalVC 28 
                   L++++ V+
  CDO70011.1 355 HRLVSCSKVS 364
                 4599999997 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   1.4e+03      10      26 ..      41      57 ..      39      60 .. 0.79
   2 !   43.8   0.6   3.5e-15   1.6e-11       6      47 ..      73     114 ..      71     115 .. 0.96
   3 ?   -2.2   0.3      0.93   4.2e+03      23      30 ..     357     364 ..     350     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
                HHHHHHHTS-HHHHHHH CS
       F-box 10 vlrhILerLplsdllal 26
                +  +IL  Lp s+l  l
  CDO70011.1 41 IAYKILATLPRSSLAVL 57
                5568*********8765 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 3.5e-15
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksi 47 
                 LP+e+ +h++++Lp  +l  +++VS++wr l d+ +lw+  +
  CDO70011.1  73 LPPEISLHVFSYLPYQSLMTCALVSRRWRTLADDQSLWKSLC 114
                 9*************************************9887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.93
                 HHHHCTT- CS
       F-box  23 llalrrVS 30 
                 l+++++VS
  CDO70011.1 357 LVSCSKVS 364
                 899***98 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00014      0.61     228     255 ..     271     298 ..     208     302 .. 0.75
   2 !    8.4   0.1   0.00016      0.74     220     256 ..     306     340 ..     300     344 .. 0.83
   3 !    3.6   0.0    0.0047        21     236     257 ..     363     384 ..     360     450 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00014
                 .TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 igqtylfalsrdgkLrvWnlltgkclat 255
                 +g ++lf+ s d+++r W+l+tg++l++
  CDO70011.1 271 TGTQVLFTGSKDRTIREWDLATGSVLRV 298
                 289********************99875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00016
                 EEET.....TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 220 dvavavveigqtylfalsrdgkLrvWnlltgkclati 256
                 +v + +v  ++ +l+++s+d+++ vWnl t+k+l  i
  CDO70011.1 306 SVLSICV--HRGILVSASSDHRVVVWNLCTNKPLKII 340
                 5555566..799********************99874 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0047
                 EETT-EEEEEETTTTEEEEEEE CS
      Nup160 236 lsrdgkLrvWnlltgkclatid 257
                 +s d+ Lr+W+ +tg +l+t++
  CDO70011.1 363 VSGDRSLRLWDAETGALLRTFE 384
                 6789999999999999999955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3558.96
//
Query:       CDO70012.1  [L=355]
Description: hypothetical protein BN946_scf184354.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.044   13.1   0.0      0.075   12.3   0.0    1.3  1  Capsid_VP7  Outer capsid protein VP7


Domain annotation for each model (and alignments):
>> Capsid_VP7  Outer capsid protein VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-06     0.075     228     259 ..      51      82 ..      36      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-06
  Capsid_VP7 228 ddthkarsimyGPsasdlvaactkacaadtar 259
                 +++hkars++yG  a +l+a c   c a+ +r
  CDO70012.1  51 ELSHKARSALYGLQAGELTAYCYPYCPAERLR 82 
                 789***********************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2561.20
//
Query:       CDO70013.1  [L=332]
Description: hypothetical protein BN946_scf184354.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-11   42.7   0.0    6.4e-11   41.9   0.0    1.4  1  SH3_9     Variant SH3 domain
    2.8e-06   26.8   0.0    4.7e-06   26.1   0.0    1.3  1  SH3_1     SH3 domain
    9.3e-05   22.0   0.0    0.00016   21.3   0.0    1.4  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.1e-14   6.4e-11       2      49 .]     256     307 ..     255     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.1e-14
       SH3_9   2 lypyepreddeLsLqrGDvitvieesedgWlegs....ltGrtGlvPanyve 49 
                  + + p  +deL + +G++++++ee+ed W++++    ++G++G+vP+ +++
  CDO70013.1 256 EHTFIPSLADELTIKVGETLRMLEEYEDEWCLVErlgsRSGERGVVPRFCLK 307
                 6789*****************************965545*********9986 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   7.8e-10   4.7e-06      11      47 ..     264     302 ..     259     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 7.8e-10
                 TTBXEBSTTEEEEEEEECSSSEEEEEETTS..TEEEEEE CS
       SH3_1  11 sdELsfkkGDviivleksedgWwkgrlkgt..gkeGliP 47 
                 +dEL++k G+++  le+ ed+W+ +++ g+  g++G +P
  CDO70013.1 264 ADELTIKVGETLRMLEEYEDEWCLVERLGSrsGERGVVP 302
                 79**************************9999******9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.7e-08   0.00016       8      56 ..     259     308 ..     253     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.7e-08
                 B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.C...CCEEEEEGCGEEE CS
       SH3_2   8 yvgedkseLsfkkGdvikvlslgskdsdgwwegev.g...GrvGlfPsslvee 56 
                 + ++  +eL++k+G+++++l   ++  d+w+++e+ g   G +G++P+ +++e
  CDO70013.1 259 FIPSLADELTIKVGETLRML---EEYEDEWCLVERlGsrsGERGVVPRFCLKE 308
                 66666789************...99999*****9985566999*****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2366.55
//
Query:       CDO70014.1  [L=1234]
Description: hypothetical protein BN946_scf184354.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-07   30.8   0.0    4.6e-07   29.9   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00025   21.2   0.0    0.00056   20.1   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0013   19.0   0.0     0.0028   17.9   0.0    1.4  1  AAA_22           AAA domain
     0.0019   18.6   0.0     0.0092   16.4   0.0    2.1  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.056   13.1   0.0        0.1   12.3   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
      0.064   12.6   0.0       0.15   11.4   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.075   13.5   0.0       0.15   12.4   0.0    1.6  1  AAA              ATPase family associated with various cellul
       0.11   11.6   0.0       0.19   10.8   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.11   12.6   0.0       0.47   10.6   0.0    2.0  2  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.3e-10   4.6e-07       2     123 ..     999    1118 ..     998    1131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.3e-10
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEE....EEESGGG--.HHHHHHHHHHHHSSE CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeil....vlDEverae.sevlnsLlslleerr 93  
                  vlL Gp+G gKs la+++ ++l  ++++v++t   +++d+  + +i + +++ +d +l++   e e++       E+e+a+  ++l+sLl++ e  r
  CDO70014.1  999 VLLCGPSGHGKSLLARKFGSLLDVPTHTVNMTTLQNTRDIWKSHSI-DPHEEPSDRSLKDFLMENEVAdkksQTQEIEKAQdEKILSSLLMPWEYGR 1094
                  89*******************************************9.6666666666666666444442222579******99************** PP

                  EE..-SSSEEE---......-EEEEEESS- CS
       AAA_5   94 llleeggelvkaknddllerfrviatanpl 123 
                   ++e g++ v++++      +  ++t+n  
  CDO70014.1 1095 CSFEAGHRHVDVSK------VIWLGTSNIG 1118
                  **********9998......7777777765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.8e-07   0.00056       5     168 ..     998    1164 ..     995    1167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.8e-07
                  -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.............----THHHHHHHHHTTT-HHHHTTSEEEEETGGG--------- CS
       AAA_2    5 silllgptgvGktelakalaellfvkkekkliradaselle.............eeevehlvsrligappgyvgaeegGivllDEidKihpkessga 88  
                   +ll+gp+g Gk++la++  +ll+v    +  ++++++l+              ee ++++++ ++ +++   ++ +       Ei+K++       
  CDO70014.1  998 VVLLCGPSGHGKSLLARKFGSLLDV----PTHTVNMTTLQNtrdiwkshsidphEEPSDRSLKDFLMENEVADKKSQT-----QEIEKAQD------ 1079
                  6899********************9....8888888888886666667777776677888888888888888887776.....68888888...... PP

                  ----HHHHHHHHHHHH--EE-----.--EE-TT-EEEEEE--TTHHHHTTTS-S........TTTTSGGG--HHHHHHTT--HHHHTT- CS
       AAA_2   89 dvSregVqrdLLqileggtltdkqg.rkvdtknilfImtgafgsskisdesrsk........eeeeekkkeeveeelkkglipEllgRl 168 
                      e ++  LL   e g+ + + g r+vd ++++ + t+++g +   +++ ++        +ee+ +    ++ ++++ l + ll R+
  CDO70014.1 1080 ----EKILSSLLMPWEYGRCSFEAGhRHVDVSKVIWLGTSNIGHDLVLEHQDHRpapetqlsREEYIDLMALLRPRVSERLGASLLSRV 1164
                  ....******************************************9998887777666666666666666666666666666666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-06    0.0028       8      58 ..     999    1040 ..     997    1071 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllr 58  
                  ++++G+sG GK++l+r++ + l         ++++ +v+++ + + +d+++
  CDO70014.1  999 VLLCGPSGHGKSLLARKFGSLL---------DVPTHTVNMTTLQNTRDIWK 1040
                  689*******************.........99999999999999999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.4   2.8e+03      89     136 ..     787     846 ..     749     897 .. 0.53
   2 !   16.4   0.0   4.6e-06    0.0092       2      61 ..     975    1032 ..     974    1095 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
      AAA_16  89 aesaeleawrekleealaavpelagaeasrllellkrll.allsrder.................p 136
                 +es++ e+ +e  e+ +      + +ea r+ e+++r l +++++ ++                 p
  CDO70014.1 787 SESRLSEPIAEGREDDYD-----DVEEADRMDETIRRPLsSQSAT-QPrresmvvtpvhaiatprP 846
                 333333333333333333.....4445577777777777544444.22244444444444444442 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.6e-06
      AAA_16    2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcd 61  
                  l+G ++ leqL ++l++  +  p +vll G+sG GKs l+r++   l     ++++ ++ 
  CDO70014.1  975 LIGQDRVLEQLFRVLSMP-TVAPIVVLLCGPSGHGKSLLARKFGSLLDVP-THTVNMTTL 1032
                  7899***********933.566789****************998544333.555555555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.1e-05       0.1       1      42 [.     975    1016 ..     975    1035 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
                       ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat    1 ligesealkelleqikkvaktdlsvlitGesGtGKellarai 42  
                       lig+++ l++l++ +++ +  ++ vl+ G sG GK+llar+ 
       CDO70014.1  975 LIGQDRVLEQLFRVLSMPTVAPIVVLLCGPSGHGKSLLARKF 1016
                       68999999*******************************975 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.6e-05      0.15      25      52 ..     999    1026 ..     980    1053 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
  Mg_chelatase   25 lllvGppGsGKtmlakrlpsllpplsee 52  
                    +ll+Gp+G GK++la+++ sll   +++
    CDO70014.1  999 VLLCGPSGHGKSLLARKFGSLLDVPTHT 1026
                    89******************99765554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.8e-05      0.15       1      37 [.     999    1035 ..     999    1121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.8e-05
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellsk 37  
                  vll+Gp G GK+lla+   + l+v+  ++++++l + 
  CDO70014.1  999 VLLCGPSGHGKSLLARKFGSLLDVPTHTVNMTTLQNT 1035
                  79*********************99999999988754 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.5e-05      0.19      66     171 ..     932    1040 ..     928    1051 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.5e-05
       T2SSE   66 rplqdarlpekgvrlrvvllPvvagealviRkksakel..tlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttll..yallkeinksde 158 
                  ++lqda    + + ++ +  P ++  ++ i ++  + l     dl+ + ++ e++ +vl+ +  +  ++l+ G+ g GK+ l+     l  +++++ 
  CDO70014.1  932 KLLQDADPA-TRYYVQRANSPQTRRASALIHRSFFRPLtrVRYDLIGQDRVLEQLFRVLSMPTVAPIVVLLCGPSGHGKSLLArkFGSLLDVPTHTV 1027
                  677888877.888888888999998666666555555521234677788888999***************************965667888999999 PP

       T2SSE  159 rivtvEDpvEiql 171 
                  ++ t+  ++ i  
  CDO70014.1 1028 NMTTLQNTRDIWK 1040
                  9999999888755 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   2.6e+03      48      92 ..     934     977 ..     903     988 .. 0.70
   2 ?   10.6   0.0   0.00024      0.47       1      19 [.     998    1016 ..     998    1077 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
      AAA_33  48 ytrvldrlyqilnelarkalsagrnvildatnlsrrerarflkla 92 
                 ++++ + +++ + ++a++ +++++++++   ++++ +r r++ + 
  CDO70014.1 934 LQDADPATRYYV-QRANSPQTRRASALIHRSFFRPLTRVRYDLIG 977
                 333444455554.89999999999999999999999998887665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00024
      AAA_33    1 lvllvGlpGsGKstlaerl 19  
                  +vll+G++G GKs la++ 
  CDO70014.1  998 VVLLCGPSGHGKSLLARKF 1016
                  89**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 7585.56
//
Query:       CDO70015.1  [L=385]
Description: hypothetical protein BN946_scf184354.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-22   79.7   0.0    4.7e-22   78.7   0.0    1.5  1  Aha1_N           Activator of Hsp90 ATPase, N-terminal
    6.7e-14   52.2   0.0    1.8e-13   50.8   0.0    1.7  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro
     0.0022   18.3   6.2     0.0045   17.3   0.3    2.3  2  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   7.8e-26   4.7e-22       1     137 []      20     148 ..      20     148 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 7.8e-26
      Aha1_N   1 eKdatpWskerlkelllslkleneeaksvkitevksveGdasvnqrKgKvifiydlklklewegtvkkedgkkvkGeieipelssenddd...dyeiev 96 
                 +K +tpW+k++++ +l+ +++++e++++v i++v++v+Gd+++ qrK Kv        +l+w+gt+  +dg+ v+G+++ipe+s+e + d   dy++e+
  CDO70015.1  20 NKTVTPWAKQWFERELTTVRVAGEGTEEVGIERVVEVDGDVELGQRKSKV--------VLNWSGTA--SDGTAVSGKLTIPEVSHEVTLDgtsDYVYEW 108
                 699*********************8888********************95........79*****9..******************6666689****** PP

      Aha1_N  97 svkkdeekkekqklkelikskgvpklreklakfvkeLkeeh 137
                 ++++ e++++ ++l +l ks + + l+ek+ +f ++++++h
  CDO70015.1 109 KLDT-ERSPAVDALFSLAKSRLPAALEEKFSAFPNAIINTH 148
                 ***9.69****************************999876 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0     3e-17   1.8e-13       2     121 ..     211     324 ..     210     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 3e-17
                 S-HHHHHHHHH-HHHHHHHEEEEEEEE--STTEEEEEEETTTSEEEEEEEE..EEEEETTTEEEEEEEEE..TSETEEEEEEEEEEEEETTEEEEEEEE CS
       AHSA1   2 apperVfraltdpellkrWftlteaemdlrpGgkfrlrdspdgkefgnege..ylevvpperlvytwrle..depeeeestvtieleeegggTrltlth 96 
                 a+++++f  ltd+ ++ +W t++ a++++++G +++l        fg+ ++  y  + pp+++v+tw l    +pe++ +t+t +le+ ++ T++t   
  CDO70015.1 211 ASADDLFGILTDESRIPHW-TRAPAKSKPEAGAEYSL--------FGGGVKgkYVSLSPPTEFVQTWALSspTWPEGHVATLTTTLEQGSDSTKVTWAL 300
                 8999***************.*****************........77666666****************9888888*********************** PP

                 EEEEHCHHHHHHHHHHHHHHH.HHHH CS
       AHSA1  97 tglprkqkeeegveeGweqsl.dqLk 121
                 +g+p + +ee   + + + ++ + Lk
  CDO70015.1 301 DGVPLGMEEE--ITRNIQGYYvHGLK 324
                 ******9999..55555555546666 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.1     0.013        79      27      79 ..      26      87 ..      12     138 .. 0.55
   2 !   17.3   0.3   7.5e-07    0.0045       2     136 ..     201     324 ..     200     327 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.013
                     GG.GT-T.TEEEEECSESTSSS.TTTEEEEECCCS....SEEEEEEEEE..ET.TTTEEEEEE CS
  Polyketide_cyc2 27 wp.rWhp.evarveleggggpa.rgvegtvrvggr....gtvreelvev..dp.egrllsyri 79
                     w+ +W + e+++v+++g +g+  +g+e++v v g     ++   +++ +  ++ +g+++s ++
       CDO70015.1 26 WAkQWFErELTTVRVAG-EGTEeVGIERVVEVDGDvelgQRKSKVVLNWsgTAsDGTAVSGKL 87
                     44346555777777776.333336667777777766665444455555522112344444444 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 7.5e-07
                      EEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEE.CCCSSEEEEEEEEEET.TTTEEEEEEE..SSS-TSE.EEE CS
  Polyketide_cyc2   2 vkvtvsvviaappekVwalvsdfenwprWhpevarveleggggpargvegtvr.vggrgtvreelvevdp.egrllsyriv.kpvpvany.vat 91 
                      ++vtv++ +aa++++ + +++d + +p W  + a+++ e   g+      +++ +gg g v+ + v ++p ++ + ++ +   ++p +++ + t
       CDO70015.1 201 TRVTVEANFAASADDLFGILTDESRIPHWTRAPAKSKPE--AGA------EYSlFGG-G-VKGKYVSLSPpTEFVQTWALSsPTWPEGHVaTLT 284
                      689************************997766666544..333......3442444.3.*********7477788888866677777555666 PP

                      EEEEECCETEEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  92 wtvtpdgggtrvtwtgefdagplggpfekpaaakavkgdleagLe 136
                       t+++  + t+vtw  +  +        ++ + + ++g++  gL+
       CDO70015.1 285 TTLEQGSDSTKVTWALDGVP----LG-MEEEITRNIQGYYVHGLK 324
                      777777788*****995442....33.345567788888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2746.99
//
Query:       CDO70016.1  [L=347]
Description: hypothetical protein BN946_scf184354.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-38  132.9  13.7    1.4e-38  132.4  13.7    1.2  1  DUF3429   Protein of unknown function (DUF3429)


Domain annotation for each model (and alignments):
>> DUF3429  Protein of unknown function (DUF3429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4  13.7   7.7e-43   1.4e-38       1     143 [.     121     277 ..     121     278 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 7.7e-43
     DUF3429   1 vpklalvlGlaGliPfvalallt...............laislllaeellstlaaaqlaYgavilSFlGGvhWgla.leeegaakakrtrlalsvvpsl 83 
                 vp++ +v+GlaG +P++a a +t               ++i+ ++a ++l++++++q++Ygav+lSFlG++hWg++ + ++g +   + rl+l+ +p++
  CDO70016.1 121 VPRPYVVFGLAGGLPYLASAGTTawlarqaglaaqgisTNIDPGVAITILDQALNVQVTYGAVLLSFLGALHWGFEfAGYGGNK-Y-YPRLLLGAAPVV 217
                 79************************************99************************************77777764.3.89********** PP

     DUF3429  84 lawlalllpseaalallilgflllllvDrraaragwlpswylklRfvltavvvlsllltl 143
                 ++w +l+l ++ al++  +gf++l+++D +a++agw+p+wy+++Rf+l+++v+++++ +l
  CDO70016.1 218 FGWSTLALDPTSALIAQWVGFTGLWWADLKATSAGWTPKWYSQYRFYLSILVGTCIIGSL 277
                 *********8888888888*************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2407.73
//
Query:       CDO70017.1  [L=486]
Description: hypothetical protein BN946_scf184354.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0075   15.7   0.4      0.022   14.1   0.4    1.8  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   1.2e-06     0.022       5      38 .]     172     205 ..     168     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-06
        SKG6   5 snsntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 s+++++ ++ aV+ +V++ii+ L+a +++ r+R+
  CDO70017.1 172 SSNTSAIVGGAVGGGVGAIILSLVAWFLLRRKRR 205
                 4566677899******************999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3391.26
//
Query:       CDO70018.1  [L=859]
Description: hypothetical protein BN946_scf184354.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-08   33.6   1.4    8.5e-05   22.9   0.0    2.5  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.8e-09   8.5e-05       1      79 [.     414     488 ..     414     492 .. 0.72
   2 !    8.1   1.4   0.00017       3.1     125     146 .]     503     524 ..     490     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.8e-09
         HET   1 YeaLSYvWgdske.keeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelviv 79 
                 Y+a+S+vW +    +++    g +  + + + ++ ++l+  +    W D++C+ +  +k++++ + +m++ Y+ A+ v+v
  CDO70018.1 414 YVAISHVWAQGMGsSTDD---GLPGCVVRRIASLARTLH-PERGAFWMDSLCVPKA-KKQRQHAILHMSETYRDAASVLV 488
                 99******5554312222...223344444444333333.56689***********.99*****************9998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00017
         HET 125 eeraieellespwfkRvWvlQE 146
                  ++ + ++++s w++RvW+lQE
  CDO70018.1 503 WRENLLRIATSAWVRRVWTLQE 524
                 4556678999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5677.48
//
Query:       CDO70019.1  [L=419]
Description: hypothetical protein BN946_scf184354.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-11   41.9   0.0    1.8e-10   41.1   0.0    1.4  1  DUF836         Glutaredoxin-like domain (DUF836)
    9.9e-07   28.5   0.3    2.8e-06   27.1   0.1    1.9  2  PSP            PSP
    0.00065   19.7   0.0     0.0013   18.8   0.0    1.4  1  Thioredoxin_3  Thioredoxin domain
     0.0071   16.4   0.5      0.013   15.5   0.5    1.4  1  zf-CCHC        Zinc knuckle


Domain annotation for each model (and alignments):
>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0     4e-14   1.8e-10       2      58 ..      13      71 ..      12      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4e-14
                EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETT..T-CCCHCCCCTTTTEEEECTT CS
      DUF836  2 ltLyskpgChlCeqakekLkelkleegleleviDIa..kdeeleakYgleipvlalegv 58
                l L+s p+C+lC+ ak+ L++++ +  ++le+++I+  ++e +++kY + ip l++eg+
  CDO70019.1 13 LNLFSGPNCSLCDIAKAELAKVRQQRPFDLETVNIQdpGQERWKRKYVYWIPALHIEGK 71
                779*********************************766666**************993 PP

>> PSP  PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   6.2e-10   2.8e-06       2      38 ..     162     202 ..     161     208 .. 0.84
   2 ?   -3.6   0.0       2.4   1.1e+04      18      23 ..     340     345 ..     334     347 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.2e-10
         PSP   2 PGvi.SaeLReALglqegq...lPpWiykMqrlGlPPgYpk 38 
                 PG+i  a LReALgl+eg+     +W+ +M   G+PPg+ +
  CDO70019.1 162 PGQIkGAVLREALGLKEGDhgeGVEWLQNMACWGYPPGWVG 202
                 55553467***********99899***************65 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.4
         PSP  18 gqlPpW 23 
                   +PpW
  CDO70019.1 340 STVPPW 345
                 358999 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.8e-07    0.0013       7      64 ..      18      77 ..      12      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-07
                   SSSSTTCHHHHHHHHHHCHCCTCECEEECCTTHHHH..HHCT-SSSSEEECTTCEEEESS CS
  Thioredoxin_3  7 gpgCakCpklekavkeaaaekgikaevekvtdfeei..ekygVmsvPalvidgkvvvsGk 64
                   gp+C  C+ +++ ++++ +++ +++e ++++d+ +   ++  V+ +Pal i+gk v++G+
     CDO70019.1 18 GPNCSLCDIAKAELAKVRQQRPFDLETVNIQDPGQErwKRKYVYWIPALHIEGKEVAKGR 77
                   89****************************999888888888*****************7 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5     3e-06     0.013       2      16 ..      99     113 ..      98     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3e-06
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                  C+nCG+p H+ + C
  CDO70019.1  99 RCFNCGSPDHVLSAC 113
                 7*********97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3025.37
//
Query:       CDO70020.1  [L=190]
Description: hypothetical protein BN946_scf184354.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.5   0.1      0.028   15.0   0.1    1.3  1  NPA       Nematode polyprotein allergen ABA-1


Domain annotation for each model (and alignments):
>> NPA  Nematode polyprotein allergen ABA-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   1.6e-06     0.028       6      34 ..      70      98 ..      67     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-06
         NPA  6 ekleeflkWlteeqkaeikalkeagasse 34
                e +e+++ Wl+e+q+ae+++l++     +
  CDO70020.1 70 EVVENYIAWLSEDQMAELERLEARTCTAQ 98
                67899****************98765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1552.14
//
Query:       CDO70021.1  [L=352]
Description: hypothetical protein BN946_scf184354.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-68  228.7   0.0    9.7e-68  228.4   0.0    1.1  1  IF-2B        Initiation factor 2 subunit family
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.28   11.3   0.0    1.4  1  Cyt_c_ox_IV  Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4   0.0   1.1e-71   9.7e-68       1     281 [.       6     333 ..       6     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 1.1e-71
                 SS-SHHHHHHHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHH..................... CS
       IF-2B   1 kvrGspaiaiaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakks..................... 78 
                 +v+Gs + a++++ vl++v+++a+ s+ ++L+  +r+ +++L +a+P + s+gn +rr+l++++e  +s++  ++ +s                     
  CDO70021.1   6 QVVGSREAALETALVLRQVVSKARFSNIQQLIAVIREVGRRLAEAQPKEHSVGNTVRRVLHNVREEYNSATKGATGASrnvysiskfvlqgqprkhtgg 104
                 799**********************************************************9998888888888888899******************* PP

                 ............................HHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEEEXTTTTHHHT CS
       IF-2B  79 ............................liekikelikeieeadekigdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqGrl 149
                                             l+e+i+++++e e+   +++++a+++i+++++ilTi++sktv ++l++a +  ++ +Viv+E+ P+ qG++
  CDO70021.1 105 aaksearitlkendpsdpdsfaralkpvLMEAIQDVLDELETVYDNVSKNAKDHIHSDEIILTIGHSKTVEAFLKSAGH-YRNYTVIVAETAPSYQGHE 202
                 ****************************************************************************987.79***************** PP

                 HHHHHHHTTXEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSEEEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGG.SSXXBEXTHHHHEETT CS
       IF-2B 150 takeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqlded.ifieerdpeellnitg 247
                 +a +L+ agi + l++ds++ ++ms+ v+kvi+GA++il+nG++++ +G++  A +A+++++pv v+a+ +k+++  +l ++     ++dp  +l +++
  CDO70021.1 203 MARSLSAAGISTFLVPDSSIYAIMSR-VNKVILGAHAILANGGLFAISGSLLAATAARAHSTPVVVCAGQFKLTPLWNLYHEhGALDFADPSSVLGFDE 300
                 **************************.**************************************************986551678************* PP

                 EESSTTTEEEEEBSEEEEEGGGXSEEEETTEEEX CS
       IF-2B 248 eriaeeelkvvnpafDvtPpelItliITevGvlp 281
                  + +e +++vvnp +D++ pel++++IT+ G  p
  CDO70021.1 301 GKLVE-RVDVVNPYYDYVGPELVDVFITNDGDHP 333
                 **999.***********************99766 PP

>> Cyt_c_ox_IV  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.28      10      62 ..     211     264 ..     205     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
  Cyt_c_ox_IV  10 llavffllvavvYgvltkie.elvGttalvltgglallvgtylafvarridarp 62 
                  ++++f++  + +Y+++++++  + G  a++  ggl ++ g  la++a r    p
   CDO70021.1 211 GISTFLVPDSSIYAIMSRVNkVILGAHAILANGGLFAISGSLLAATAARAHSTP 264
                  5789**************994567***********************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2456.20
//
Query:       CDO70022.1  [L=78]
Description: hypothetical protein BN946_scf184354.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-14   52.4   0.0      5e-14   52.1   0.0    1.1  1  G-gamma   GGL domain


Domain annotation for each model (and alignments):
>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.8e-18     5e-14       2      43 ..      12      54 ..      11      58 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 2.8e-18
     G-gamma  2 qlklklkrei.eqLkkeLkrerikvSkAceelidYvestkDpl 43
                +lkl++++e+ ++L+++L+r+ri+vS+A+++li+Y++st D+l
  CDO70022.1 12 ELKLRRLTEHnQRLREDLARPRIRVSEASKSLINYCKSTPDHL 54
                79***************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 579.50
//
Query:       CDO70023.1  [L=280]
Description: hypothetical protein BN946_scf184354.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   13.4   0.3      0.076   13.4   0.3    1.8  2  DUF4200   Domain of unknown function (DUF4200)
        0.9   10.1   7.3        1.2    9.7   2.6    2.3  2  HSCB_C    HSCB C-terminal oligomerisation domain


Domain annotation for each model (and alignments):
>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.48   4.3e+03      74      87 ..     145     158 ..     136     173 .. 0.47
   2 ?   13.4   0.3   8.5e-06     0.076      48     117 ..     202     272 ..     189     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.48
     DUF4200  74 lkkekeaeikklka 87 
                 + +e+ + +++lk+
  CDO70023.1 145 ADEEMLEMVEQLKE 158
                 33333333333333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.5e-06
     DUF4200  48 lkfdkflkendakraralkkaeeerkl.kkekeaeikklkaeietlkseiekleekleeykkYeefLekvv 117
                 l fd+  k+ ++   + + ++ + + + ++  ++ i++l++  e+ k+  + lee++e++ k+ ++ e v+
  CDO70023.1 202 LTFDEVCKKVERIALKDEDEIRTAHAQsQRTIAQTIAELEEAYERRKQLWSGLEEEVERCGKCHSYIELVA 272
                 56666666666655555555554443304456677888888888888888899*************99886 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.024   2.1e+02       7      30 ..     147     169 ..     143     195 .. 0.79
   2 ?    9.7   2.6   0.00013       1.2      15      65 ..     210     261 ..     206     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHCGGGSSSHHHHHH CS
      HSCB_C   7 mevMelrEeleeaeeaadkeelee 30 
                 +e++e+ E+l e ++a + ++l++
  CDO70023.1 147 EEMLEMVEQLKEPMAA-QGSALKQ 169
                 5899999999998655.4466665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
                 HHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHH..HTT-HHHHHHHHHHH CS
      HSCB_C  15 eleeaeeaadkeeleelkaeveerieeleaeleeaf..ekkdleaaadllrrl 65 
                 ++e + + +d++e++  +a+ +  i++++aeleea+  +k+ ++ + +++ r+
  CDO70023.1 210 KVERI-ALKDEDEIRTAHAQSQRTIAQTIAELEEAYerRKQLWSGLEEEVERC 261
                 56777.56699*************************76666999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1969.76
//
Query:       CDO70024.1  [L=105]
Description: hypothetical protein BN946_scf184354.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-11   44.6   0.8    1.5e-11   44.2   0.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.8   8.4e-16   1.5e-11      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 8.4e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++  +e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO70024.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLAQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 764.86
//
Query:       CDO70025.1  [L=239]
Description: hypothetical protein BN946_scf184354.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-11   42.0   0.0    1.7e-10   41.2   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    4.9e-08   33.2   0.0    9.4e-08   32.3   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
      2e-07   31.2   0.1    5.3e-07   29.9   0.1    1.7  1  GST_N     Glutathione S-transferase, N-terminal domain
    0.00022   21.2   0.2    0.00045   20.2   0.2    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   3.8e-14   1.7e-10       2      73 ..      10      94 ..       9      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.8e-14
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHH.HHH-TT--SSEEETTS-............EEESHHHHHHHHHHHH-G CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgehdeel.laknplgkvPvLeddge............altdSlaIidyLeelypg 73
                y+ paS+y+ rv +aL+e + +++ +ev+  +++ ++  ++np gk+P+++ +g             ++ +Sl I+++L + +p+
  CDO70025.1 10 YSHPASVYSHRVEIALKEAKADYTNYEVDLANKPSWYaARVNPVGKLPAITYGGPntapddpspeaaKINESLIILEFLADIFPE 94
                899**********************************56667********76655557777888888************999986 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.1e-11   9.4e-08       1      69 [.      14      90 ..      14      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.1e-11
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHH.HHHCTTTSSSEEE-...........CTTEEEESHHHHHHHHHH CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfekseef.prlnprgtVPvLwd...........kdgqvineSseIlrylet 69
                a+ ++hRv ial++ + +++  +v    +  +k++++  r+np g++P++             +++  ineS+ Il++l++
  CDO70025.1 14 ASVYSHRVEIALKEAKADYTNYEV----DLANKPSWYaARVNPVGKLPAITYggpntapddpsPEAAKINESLIILEFLAD 90
                699*********************....456677777469************998888776655666***********986 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.2e-10   5.3e-07       2      75 ..       6      89 ..       5      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.2e-10
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHH.HHCTTS-SSEEEET............TEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspell.klnplgkvPaLedn............gkkltESraIleYia 75
                ++t ys++ s ++hr++++l++++++y   ++d+   ++k+++++ ++np gk+Pa   +              k+ ES +Ile++a
  CDO70025.1  6 QITFYSHPASVYSHRVEIALKEAKADYTNYEVDL---ANKPSWYAaRVNPVGKLPAITYGgpntapddpspeAAKINESLIILEFLA 89
                6899*****************************9...56667775257888******999999999999999999*******99998 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2     1e-07   0.00045       7      57 ..     134     196 ..     105     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1e-07
                 HHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-.............--- CS
     GST_C_2   7 aleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf.............dir 57 
                 a ++l + l+ ++++L     ++ ++++ aDia+apfl+r+ra  ++              +i 
  CDO70025.1 134 ADQTLLNLLESVQERLHPTG-FAIGKWSNADIAVAPFLFRFRAMLRHDlgsfpvgegtrvyEIL 196
                 5688999**********998.7889*****************9965323445555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1715.04
//
Query:       CDO70026.1  [L=347]
Description: hypothetical protein BN946_scf184354.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-73  247.4   0.0    2.1e-73  247.1   0.0    1.1  1  ATP_bind_1  Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
       0.14   12.3   0.2       0.59   10.3   0.0    2.1  2  AAA_33      AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   0.0   2.3e-77   2.1e-73       1     239 [.       7     244 ..       7     246 .. 0.97

  Alignments for each domain:
  == domain 1  score: 247.1 bits;  conditional E-value: 2.3e-77
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeeleke.eddyllfDt 98 
                 v+G +GsGK+t++    +++++ +r++ +vNLDPA+e++pY++a+di  li+ledvm++ glgpng++ +++e+l+ + dwl+++l++  +d+y+lfD 
  CDO70026.1   7 VCGSPGSGKSTYCYGKHQLFTALNRPISIVNLDPANENIPYPCAIDISSLIKLEDVMNEFGLGPNGGMLYCMEYLEANYDWLEDRLKELdKDEYILFDL 105
                 89************************************************************************************9996669****** PP

  ATP_bind_1  99 PGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..lekeleffedvealslllekee. 194
                 PGQ+el t ++sl++i+++L+      +v+L D++++td++k++s l+++l+aml+lelPh++v++k+Dl+ ++  l+++l+f+++v++ls+l+++ + 
  CDO70026.1 106 PGQVELSTNHPSLKNIIHQLA------AVHLCDAHYVTDASKYVSVLMLSLRAMLHLELPHINVFSKVDLITQYgdLDFNLDFYTEVQDLSYLQNLLNq 198
                 *****************9999......7********************************************99*9****************9999988 PP

  ATP_bind_1 195 ..ekykklaeaiaelleefalvlrflplssekeesiedllslideal 239
                    +y+ l+ +i++l+e+++lv  f +l++e++es+  l+++id+a+
  CDO70026.1 199 qsPRYAALNMQICSLVEDYGLV-GFETLAVEDKESMLHLTRVIDKAT 244
                 88999*****************.*********************997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.6e-05      0.59       3      16 ..       6      19 ..       6      53 .. 0.86
   2 ?   -2.1   0.4      0.45     4e+03      87     121 ..     298     336 ..     290     345 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.6e-05
      AAA_33  3 llvGlpGsGKstla 16
                +++G pGsGKst+ 
  CDO70026.1  6 VVCGSPGSGKSTYC 19
                58**********86 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
      AAA_33  87 rflklarrlgvpvrivv....vetdeetlkeRlakRaan 121
                 r++ + +++++ +++ +    +++ e+ ++++ + R++n
  CDO70026.1 298 RWIDAREEYDAWEKAQWrkegLKVQEAAARQKAKIRERN 336
                 555555555555555552222345555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2364.32
//
Query:       CDO70027.1  [L=99]
Description: hypothetical protein BN946_scf184597.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-12   46.5   0.5    3.6e-12   46.3   0.5    1.1  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.5     2e-16   3.6e-12      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO70027.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 6777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 734.40
//
Query:       CDO70028.1  [L=160]
Description: hypothetical protein BN946_scf184597.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1062.86
//
Query:       CDO70029.1  [L=192]
Description: hypothetical protein BN946_scf184597.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1427.33
//
Query:       CDO70030.1  [L=351]
Description: hypothetical protein BN946_scf184597.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-06   26.1   0.6    1.9e-05   25.1   0.6    1.5  1  HMG_box_2       HMG-box domain
    0.00024   21.4   0.8     0.0012   19.2   0.4    2.2  2  HMG_box         HMG (high mobility group) box
  ------ inclusion threshold ------
      0.022   14.4   0.0      0.041   13.6   0.0    1.4  1  DUF4255         Protein of unknown function (DUF4255)
      0.031   14.2   0.0      0.051   13.5   0.0    1.3  1  DrsE_2          DsrE/DsrF/DrsH-like family
      0.033   14.1   0.2      0.033   14.1   0.2    1.5  2  Cas9_PI         PAM-interacting domain of CRISPR-associated e
      0.067   13.8   0.7          4    8.1   0.0    2.9  2  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext
       0.12   12.1   0.2        0.2   11.4   0.2    1.3  1  DUF2299         Uncharacterized conserved protein (DUF2299)


Domain annotation for each model (and alignments):
>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6   7.6e-09   1.9e-05       6      57 ..      91     143 ..      88     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7.6e-09
                 SS--HHHHHHHTTHHHHHHHT--.-SSHHHHTGGGHHHHHHS-HHHHHHHHHH CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnp.viglaevsklcsekWkalseeeKekYeek 57 
                 +++n Y++f     +e+k++  + + + a  s + +e+ k ls+eeK ++ e+
  CDO70030.1  91 RKPNTYNMFLHHLAKEAKAQDDNgTLNAAQLSAAHHEQYKMLSKEEKAAFIEE 143
                 89******************5447**************************997 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.4   4.8e-07    0.0012       3      56 ..      91     146 ..      89     153 .. 0.87
   2 ?   -0.4   0.0      0.64   1.6e+03      38      54 ..     300     316 ..     282     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.8e-07
                 SS--HHHHHHHHHHHHHHHH..STTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
     HMG_box   3 Rplsafflfskeqraklkae..nPelknaeiskklgekWkalseeeKkkYeekaek 56 
                 R ++ +++f+ +  ++ ka+  n +l+ a++s    e++k+ls+eeK+ ++e+  +
  CDO70030.1  91 RKPNTYNMFLHHLAKEAKAQddNGTLNAAQLSAAHHEQYKMLSKEEKAAFIEELVE 146
                 8899******99888777763388999************************99765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.64
                 HHHHSHHHHHHHHHHHH CS
     HMG_box  38 kWkalseeeKkkYeeka 54 
                 ++k l+++eK+  ++++
  CDO70030.1 300 MFKRLTDAEKAVLKQEY 316
                 78888888887665555 PP

>> DUF4255  Protein of unknown function (DUF4255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.041      18      57 ..      73     111 ..      59     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
     DUF4255  18 vdevnvafdsPdkewaaslpeptlnlfLydieentalrns 57 
                 ++ vn  f sPdk waa+++ +t n+fL++++++++  + 
  CDO70030.1  73 DHYVNMMFKSPDKLWAAERKPNTYNMFLHHLAKEAKA-QD 111
                 46799***************99***********9983.33 PP

>> DrsE_2  DsrE/DsrF/DrsH-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.051      63     132 ..      99     179 ..      80     188 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
                 HHHHHS-SS.......--SSS-GGGHHHHHHHHHHHHCT---HHHHHHHHHHTT-EE....EEEHHHHHHHT--GGGB-TT CS
      DrsE_2  63 amkmvtrks.......klskmnmagigtkmmkkvmkekgvasleeLleaakeagvkl....vaCqmtmdlmglkkeelidg 132
                 ++  + +++       +l   +++ + ++  k + ke+++a +eeL+e+++ ++  l     aC+++++      eel+  
  CDO70030.1  99 FLHHLAKEAkaqddngTLNAAQLSAAHHEQYKMLSKEEKAAFIEELVETCQAQQYSLrltqRACTLSINHTTQLIEELVST 179
                 44433333334444557888888889999999999****************998776334459**9998666666666655 PP

>> Cas9_PI  PAM-interacting domain of CRISPR-associated endonuclease Cas9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.3e-05     0.033     151     229 ..      73     160 ..      17     179 .. 0.78
   2 ?   -3.2   0.1       2.5   6.3e+03     123     140 ..     306     323 ..     289     348 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                 -S-HHHHHHH......HHHTTCHHHHHHHHHHHHHH.HTSSHHHHHHHHHHH..TTTS-H..HHHHHHHHHHGGGTSSBS.---EEET CS
     Cas9_PI 151 dkieekdkle......eeknlelydellekvkkkiy.ykelskrldkllklr..ekfislsleeqakvlleiLkllsanatsadLkki 229
                 d+  +++ ++      +e+  + y+++l ++ k+ +  + + +    +l++   e+++ ls ee+a  + e+++  +a++ s+ L++ 
  CDO70030.1  73 DHYVNMMFKSpdklwaAERKPNTYNMFLHHLAKEAKaQDDNGTLNAAQLSAAhhEQYKMLSKEEKAAFIEELVETCQAQQYSLRLTQR 160
                 3344444444556667899999**************888888888888887799**************************99999874 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.5
                 E-------HHHHHHHHHH CS
     Cas9_PI 123 nakqlvlsnkevkylkki 140
                  a+  vl++++ + lk  
  CDO70030.1 306 DAEKAVLKQEYNNNLKST 323
                 344444444444444433 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.061   1.6e+02      22      42 ..     120     145 ..     117     147 .. 0.81
   2 ?    8.1   0.0    0.0015         4      26      47 ..     297     322 ..     287     324 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.061
  Arg_decarbox_C  22 qveaa.....grLtpeerqalleele 42 
                     q+ aa     + L+ ee++a++eel 
      CDO70030.1 120 QLSAAhheqyKMLSKEEKAAFIEELV 145
                     566666777889***********995 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0015
  Arg_decarbox_C  26 a....grLtpeerqalleeleagLkg 47 
                          +rLt++e++ l +e++++Lk+
      CDO70030.1 297 RdcmfKRLTDAEKAVLKQEYNNNLKS 322
                     4455579*****************97 PP

>> DUF2299  Uncharacterized conserved protein (DUF2299)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   7.9e-05       0.2      56     100 ..     120     164 ..     116     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.9e-05
                 E--HHHHHHHHHS-HHHHHHHHHHHHHHHTTTT-EEEEE-TTS-- CS
     DUF2299  56 kvseehkkalsslkeeerkeflselkrdLlrlcvdfqlipqdeel 100
                 ++s +h+++++ l++ee++ f++el ++  + +++ +l+  + +l
  CDO70030.1 120 QLSAAHHEQYKMLSKEEKAAFIEELVETCQAQQYSLRLTQRACTL 164
                 7899*********************99999888888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2213.66
//
Query:       CDO70031.1  [L=106]
Description: hypothetical protein BN946_scf184597.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 580.26
//
Query:       CDO70032.1  [L=231]
Description: hypothetical protein BN946_scf184597.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0028   18.0   0.3     0.0051   17.1   0.3    1.4  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-
  ------ inclusion threshold ------
      0.021   14.1   0.1      0.029   13.6   0.1    1.1  1  DUF2428   Putative death-receptor fusion protein (DUF2428)


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   5.7e-07    0.0051      33      85 .]      50     103 ..      43     103 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.7e-07
     PBP1_TM  33 ddyddeydde.edDdddddeeeevprkgkkkkpprkkrrwlwlliklflvlvvl 85 
                 +d+dd+ dd+ ++Dd+ +d+e+  + + +   + r   ++l + i lfl l+v+
  CDO70032.1  50 EDFDDDEDDHdSHDDEAEDNEHSQSMMKMCWMSLRMTHSMLTYKISLFLTLLVI 103
                 6777744443033333333333333333455667889999********999986 PP

>> DUF2428  Putative death-receptor fusion protein (DUF2428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.2e-06     0.029      18      84 ..       6      90 ..       3      99 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-06
     DUF2428 18 lpvvsssspeg..llpedldseeesa....................eeeee.eeeeeeeekkekeekkkvtaqvvlvccWrsmKevslll 84
                l  v++ sp+g  +     ds+++++                    e   + +++e+++++ ++e++++ ++q ++ +cW s++    +l
  CDO70032.1  6 LAAVQEASPQGspH--GYGDSSSDESdlepdplpgqmwgthilariE---DfDDDEDDHDSHDDEAEDNEHSQSMMKMCWMSLRMTHSML 90
                56688888888332..2222222222345667777777776665541...1422333333334434446778***********9765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 1250.88
//
Query:       CDO70033.1  [L=325]
Description: hypothetical protein BN946_scf184551.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-20   72.8   0.0    6.9e-20   72.1   0.0    1.3  1  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   3.8e-24   6.9e-20     140     236 ..      49     140 ..      19     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 3.8e-24
                 ----EESEEE--EEE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE---EEEE-TTT--------HHHHH CS
      Velvet 140 sskltrnLiGslvasafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfSdpFtVysakkFpGvlesTaLska 236
                 s  +t +L G ++++a    d ++k+   Fvf+DL+V+ eGtF Lr+r ++  +       +  ++pvla+++  pF++ys k+FpG+  sT+L+ka
  CDO70033.1  49 STCCTIMLAGATFTEAVIV-DYKGKNSAVFVFSDLAVKMEGTFVLRYRTFSTCS----ECPAPPRFPVLAQCYGGPFKIYSTKDFPGLKASTDLTKA 140
                 5568889********8887.77799***************************99....5566689******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1864.40
//
Query:       CDO70034.1  [L=174]
Description: hypothetical protein BN946_scf184551.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00018   22.2   0.0    0.00035   21.2   0.0    1.4  1  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     2e-08   0.00035      29      80 ..      63     114 ..      58     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2e-08
      zf-RVT  29 ppkvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80 
                 p ++  +l  l  +++p +   ++ g +++++C+ C +e E++ H +l+C+ 
  CDO70034.1  63 PRRHANLLIQLRVGHVPLQAYFARIGNAADATCPTCREEPESVAHYLLRCST 114
                 667777777777889999999999999***********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 998.28
//
Query:       CDO70035.1  [L=317]
Description: hypothetical protein BN946_scf184551.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-10   40.3   0.0    1.5e-08   34.4   0.0    2.2  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
       0.03   13.7   1.2      0.053   12.9   1.2    1.4  1  U79_P34          HSV U79 / HCMV P34
       0.18   12.0   1.5       0.44   10.8   1.5    1.6  1  Ribosomal_S25    S25 ribosomal protein


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0057        34       1      29 [.      52      80 ..      52      85 .. 0.88
   2 !   34.4   0.0   2.5e-12   1.5e-08      21     136 ..      86     204 ..      82     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0057
  Retrotran_gag_2  1 wkkkdakalalIvlsisdsllelvkeekt 29
                     wkkkd++a++lI  + + + ++l++++++
       CDO70035.1 52 WKKKDDQAKGLIWMCTATNYHYLLETKEE 80
                     9************9999999999987765 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 2.5e-12
  Retrotran_gag_2  21 lelvkeektakevWdkLkelyekksaankltlrkklfslk.mkegesvadhinkleelvneLsalgvkiddedkvvllLasLPesyetfvtaie 113
                       ++v  + +ak++Wd Lk+++   ++a  + l+  + +l  m ++  + d + +  + +++ s+ g  ++++ ++v +L++L +sy+t+ t + 
       CDO70035.1  86 KKHVAASYSAKDMWDVLKKEFGTPDTAEAIGLLMSFSNLPpMMDTRPLCDQLGTYITRIRDASNGGMHFTKSQQAVFILMKLLPSYSTLSTRFT 179
                      6899999******************************9954888889999999999999999999***************************** PP

  Retrotran_gag_2 114 s..seedltleevieklleeeerrk 136
                      s  + +d t+e ++ k+l ee+ r+
       CDO70035.1 180 SshPLKDWTIEWIQGKVLAEESLRS 204
                      *********************9876 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   8.9e-06     0.053     152     184 ..     238     270 ..     188     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.9e-06
     U79_P34 152 rkkaddeqrkrsgkqkekrkvedidkkkedekr 184
                  kk+ d++ kr gk k k k +d dk k +++ 
  CDO70035.1 238 WKKHPDQHSKRGGKGKGKGKDKDKDKGKGKDNS 270
                 589*****************9999998877654 PP

>> Ribosomal_S25  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   7.4e-05      0.44       6      53 ..     242     290 ..     238     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.4e-05
  Ribosomal_S25   6 kkakaaaa.kaggkakkKKwskgkvkdklnnavlfdketydkllkevpk 53 
                     ++ ++   k +gk+k K   kgk kd+ nn+      t++ l+ e  +
     CDO70035.1 242 PDQHSKRGgKGKGKGKDKDKDKGKGKDNSNNHAHTAAPTVNVLVAESSS 290
                    344444443566688888899*******************999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 1722.56
//
Query:       CDO70036.1  [L=666]
Description: hypothetical protein BN946_scf184551.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-07   30.6   3.9    3.3e-07   30.0   3.9    1.3  1  BUD22           BUD22
    0.00089   18.8   9.5     0.0014   18.2   9.5    1.3  1  SDA1            SDA1
     0.0056   15.0   6.5     0.0076   14.6   6.5    1.1  1  CDC45           CDC45-like protein
     0.0075   16.3   9.5     0.0075   16.3   9.5    2.1  2  TFIIA           Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
      0.028   14.3   4.2      0.049   13.5   4.2    1.3  1  CNDH2_C         Condensin II complex subunit CAP-H2 or CNDH2,
        0.1   12.2  12.8       0.21   11.2  12.8    1.5  1  PPP4R2          PPP4R2
       0.39    8.9  18.8       0.54    8.4  18.8    1.1  1  Nop14           Nop14-like family
        2.1    8.0  17.3        5.5    6.7  17.3    1.7  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   3.9   1.5e-10   3.3e-07     103     244 ..      94     228 ..      67     361 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.5e-10
       BUD22 103 ktkalenvtsrLlnsktvkevveeivesvkkllgiek.......kkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeee 194
                 k++ ++  t  L+++ + +++v++  ++    l i+        +k k++++ + k+k + + k ke     +s++e+e+ +s  +e+ee+e+de++++
  CDO70036.1  94 KSQVVASFTRFLMKTPEWAQRVANTSDGPTHPLSINLathaqvqTKSKSKSQPRPKAKGRPRGKGKER---ATSPSEQEAVESGRSEDEEDESDESDKS 189
                 55666777777888888888888888888777777774432222112222222222222222222222...2222222222222212222222222222 PP

       BUD22 195 ededdedaeedeedeeaeerelaqydgllasddededeyneetdeessee 244
                 +++d       e+d+++ee++ +  d+ +++d+ ded     +d e  e+
  CDO70036.1 190 DESD-------EDDDGQEEEDEEVGDDGANDDEGDED----GEDREGLED 228
                 2222.......23344444444444442222222222....111111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   9.5   6.1e-07    0.0014     101     176 ..     166     230 ..     129     340 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.1e-07
        SDA1 101 eedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeeke 176
                 +e++ ves   s ed+e++    ++++++ +esde++d +eee+ee +++  +++e +e     + e++e  e++e
  CDO70036.1 166 SEQEAVES-GRS-EDEEDE----SDESDKSDESDEDDDGQEEEDEEVGDDGANDDEGDE-----DGEDREGLEDHE 230
                 11222222.112.222222....111111222332222222222222222222222222.....112222111111 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   6.5   3.4e-06    0.0076     118     180 ..     166     232 ..     157     348 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-06
       CDC45 118 eereayealeeeeesdeede....eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee 180
                 +e+ea+e+ ++e+e+de+de    +e++eddd +eee+ee  d+  ++++++e++++r+  +d+e++
  CDO70036.1 166 SEQEAVESGRSEDEEDESDEsdksDESDEDDDGQEEEDEEVGDDGANDDEGDEDGEDREGLEDHEHT 232
                 4666666666666655333333322222222223333333444445555555666666633333322 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   9.5   3.3e-06    0.0075     288     371 ..     143     230 ..       5     236 .. 0.65
   2 ?    0.1   0.7      0.27   6.1e+02      80     122 ..     336     380 ..     278     444 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.3e-06
       TFIIA 288 kakelekeskkkkraeessla.............dlseilqlDGagddsde.eeeeeesdedsdsessddedeqveEDplNSd.DDvddeddddlfdtd 371
                 k++ + k++                         +++e +     +d++de +e++++ ++d+d++ +++ede+v +D  N d  D+d ed + l+d +
  CDO70036.1 143 KSQPRPKAK-----------GrprgkgkeratspSEQEAVESGRSEDEEDEsDESDKSDESDEDDDGQEEEDEEVGDDGANDDeGDEDGEDREGLEDHE 230
                 111111111...........0111122222222233333333333333333122444444445555666688889999999999999999999999987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.27
       TFIIA  80 sqapastsqslpslvipagksvqslta..nssaataatfslpakl 122
                  +++++++++ p+ ++p++++++ +ta  + ++++aat++l a++
  CDO70036.1 336 PSTTKTSTATPPTSLAPQSATPPLTTAshMLEPQGAATTALAASM 380
                 112222222222233333333332222232222222222222222 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.2   2.2e-05     0.049      61     157 ..     118     219 ..      66     255 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
     CNDH2_C  61 ekkaekkgpafadeleylyqkeakerskarrklar.......eeklkqalleeeeaeeeeevdeqeddddneaedgvdddddfgiel.eeeeddlkese 151
                 +++ + ++ ++  +  + +q++ k +s+ r+k           ++ + + +e+e +e+ + +de+++ d+++++d +d+ddd ++e+ ee  dd ++++
  CDO70036.1 118 TSDGPTHPLSINLATHAQVQTKSKSKSQPRPK--AkgrprgkGKERATSPSEQEAVESGRSEDEEDESDESDKSDESDEDDDGQEEEdEEVGDDGANDD 214
                 33333333222222233333333333333333..14678887778888888888888888888877777777766666664433333322222222222 PP

     CNDH2_C 152 eeeeee 157
                 e + e+
  CDO70036.1 215 EGD-ED 219
                 222.22 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  12.8   9.2e-05      0.21     215     285 ..     135     205 ..      78     232 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.2e-05
      PPP4R2 215 fedeeekeedd...neseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeeeee 285
                 + ++++k++++   + ++    + +e  ++ +e+  ve     +ed+e+++d   +++d+++eddd +eee+ee
  CDO70036.1 135 QVQTKSKSKSQprpKAKGRPRGKGKERATSPSEQEAVES--GRSEDEEDESDE-SDKSDESDEDDDGQEEEDEE 205
                 222222222223443334444444444444444444444..111222222211.11111222222222222211 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  18.8   0.00024      0.54     357     421 ..     166     232 ..     129     269 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00024
       Nop14 357 edddlveseseeee..eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeel.leeekka 421
                 +++++ves+++e+e  e++e+d+++e+de+++ +eeede+   d+ ++++e +++ e+++ le+++++
  CDO70036.1 166 SEQEAVESGRSEDEedESDESDKSDESDEDDDGQEEEDEEV-GDDGANDDEGDEDGEDREgLEDHEHT 232
                 11222222222222122333333333333333322222222.22222222222222222223333322 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  17.3    0.0024       5.5      65     132 ..     137     207 ..      98     231 .. 0.38

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
                 HHHHHH-----------......--------------------------..----------------------.........- CS
  Cwf_Cwc_15  65 akakkrkkaeleaeeee......ekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdd.........d 132
                 ++++k+k++  ++++ +              +e+   ++  +++e++e+ r+ d++de++e+++++e++e+dd          
  CDO70036.1 137 QTKSKSKSQ-PRPKA-KgrprgkG-------KER---ATSPSEQEAVESGRSEDEEDESDESDKSDESDEDDDgqeeedeevG 207
                 222222211.11111.11222211.......111...1111111122222222222222222222211111111111111221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.97u 0.41s 00:00:01.38 Elapsed: 00:00:00.56
# Mc/sec: 3571.59
//
Query:       CDO70037.1  [L=164]
Description: hypothetical protein BN946_scf184551.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 916.19
//
Query:       CDO70038.1  [L=388]
Description: hypothetical protein BN946_scf184551.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-11   41.9   0.1    1.7e-10   41.0   0.1    1.4  1  Cauli_VI  Caulimovirus viroplasmin


Domain annotation for each model (and alignments):
>> Cauli_VI  Caulimovirus viroplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   9.6e-15   1.7e-10       2      42 ..      43      83 ..      42      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 9.6e-15
    Cauli_VI  2 yYAVakGrepgiYttWdecqkqvkgfpgakyKsFktraeAe 42
                yY+V++Gr  gi+ +W  +q+ + g++g ++K+++t+a+A+
  CDO70038.1 43 YYVVWRGRAVGIFLNWGLAQAMTAGVEGTSFKKYSTLADAR 83
                ****************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 2139.34
//
Query:       CDO70039.1  [L=222]
Description: hypothetical protein BN946_scf184551.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.55
# Mc/sec: 1215.62
//
Query:       CDO70040.1  [L=114]
Description: hypothetical protein BN946_scf184551.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 806.88
//
Query:       CDO70041.1  [L=139]
Description: hypothetical protein BN946_scf184551.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-24   85.0   0.1    4.9e-24   84.5   0.1    1.2  1  CxC2      CxC2 like cysteine cluster associated with KDZ tran
     0.0019   18.0   0.0     0.0033   17.2   0.0    1.4  1  CxC3      CxC3 like cysteine cluster associated with KDZ tran
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.19   11.9   0.0    1.4  1  CxC1      CxC1 like cysteine cluster associated with KDZ tran


Domain annotation for each model (and alignments):
>> CxC2  CxC2 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.1   8.2e-28   4.9e-24      43     107 .]       2      69 ..       1      69 [. 0.96

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 8.2e-28
        CxC2  43 fCgCekak...skrkQLLrarlfpatvkepktaatfevLeefhllslqgkvsaydfykalerltdntg 107
                 +CgC++a+   ++++QLLr+ l+pat  ep+ta+t+++Le++h++slqgk+s+yd+y++ler+tdntg
  CDO70041.1   2 YCGCDNAAnagDHVQQLLRFDLYPATDFEPNTAFTYALLEHYHIQSLQGKISMYDYYTSLERMTDNTG 69 
                 9***99965789******************************************************97 PP

>> CxC3  CxC3 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.5e-07    0.0033      48     111 ..       3      66 ..       1      68 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.5e-07
        CxC3  48 CssCsavrea..kledyiesGfwpgspdessylfseelLllwyhlkhktpgtSerkfietleevsk 111
                 C  C++  +a  ++++++++ ++p++  e+++ f+  lL+++ h++     +S+  + ++le+++ 
  CDO70041.1   3 CG-CDNAANAgdHVQQLLRFDLYPATDFEPNTAFTYALLEHY-HIQSLQGKISMYDYYTSLERMTD 66 
                 55.888888777999************************986.56666666***********9975 PP

>> CxC1  CxC1 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.19      50     100 ..      16      66 ..       1      69 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
        CxC1  50 vrllalGylasspvkpqtaFslpllilhnslWnkcnvgalpFtealkefle 100
                  +ll+    +++  +p+taF+  ll  ++    + ++++  + ++l++  +
  CDO70041.1  16 QQLLRFDLYPATDFEPNTAFTYALLEHYHIQSLQGKISMYDYYTSLERMTD 66 
                 468999999********************9999999999999888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 984.30
//
Query:       CDO70042.1  [L=90]
Description: hypothetical protein BN946_scf184551.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.003   17.0  14.7     0.0035   16.7  14.7    1.0  1  U79_P34          HSV U79 / HCMV P34
  ------ inclusion threshold ------
      0.021   15.1   7.7      0.025   14.8   7.7    1.0  1  DUF755           Domain of unknown function (DUF755)
      0.073   12.9   7.3      0.088   12.6   7.3    1.0  1  SKA1             Spindle and kinetochore-associated protein 1
      0.084   12.1   1.7       0.09   12.0   1.7    1.0  1  UPF0565          Uncharacterised protein family UPF0565
      0.088   13.1   5.2      0.091   13.1   5.2    1.1  1  DUF3619          Protein of unknown function (DUF3619)
       0.45   10.8  15.1       0.51   10.7  15.1    1.0  1  Vfa1             AAA-ATPase Vps4-associated protein 1
       0.61   10.1   5.3       0.67   10.0   5.3    1.1  1  DUF1664          Protein of unknown function (DUF1664)
       0.92    8.9  10.3          1    8.8  10.3    1.0  1  Baculo_PP31      Baculovirus 33KDa late protein (PP31)
        1.3    7.4  10.5        1.4    7.4  10.5    1.0  1  LCD1             DNA damage checkpoint protein
        1.4    8.1  12.5        1.5    8.1  12.5    1.0  1  HemX             HemX, putative uroporphyrinogen-III C-methyl
        1.6    7.5   6.2        1.7    7.4   6.2    1.0  1  ALMT             Aluminium activated malate transporter
        1.8    7.8  12.5        2.2    7.6  12.5    1.1  1  DUF4407          Domain of unknown function (DUF4407)
        1.9    8.9  13.8        2.2    8.6  13.8    1.1  1  YlqD             YlqD protein
        1.9    9.2  10.2        2.1    9.0  10.2    1.1  1  YabA             Initiation control protein YabA
        2.4    7.4   8.7        2.4    7.4   8.7    1.0  1  PPL5             Prim-pol family 5
        3.2    7.9  18.9        4.2    7.5  18.9    1.2  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
        3.5    6.0   7.1        3.9    5.9   7.1    1.0  1  Herpes_UL6       Herpesvirus UL6 like
        3.8    6.9  15.5        4.4    6.6  15.5    1.0  1  DUF4746          Domain of unknown function (DUF4746)
        4.1    7.1  13.7        4.6    7.0  13.7    1.0  1  ATP11            ATP11 protein
        4.1    6.8  11.2          5    6.5  11.2    1.2  1  PIEZO            Piezo
        4.1    7.3  18.6          5    7.0  18.6    1.0  1  Spore_coat_CotO  Spore coat protein CotO
        4.2    6.2   7.7        4.7    6.0   7.7    1.0  1  XRN_M            Xrn1 helical domain
        4.4    6.9  15.5        5.2    6.7  15.5    1.2  1  GrpE             GrpE
        4.8    5.9   7.5        5.2    5.8   7.5    1.0  1  TSA              Type specific antigen
        4.9    7.1   6.5        6.3    6.7   6.5    1.2  1  EMP24_GP25L      emp24/gp25L/p24 family/GOLD
        5.1    7.4  21.0        5.7    7.3  21.0    1.0  1  OmpH             Outer membrane protein (OmpH-like)
        6.5    6.6   7.9        7.5    6.4   7.9    1.1  1  Folliculin       Vesicle coat protein involved in Golgi to pl
        6.6    5.1  12.2        7.3    4.9  12.2    1.0  1  Rrn6             RNA polymerase I-specific transcription-init
        6.7    7.1  10.8          8    6.9  10.8    1.1  1  RNA_pol_Rpc4     RNA polymerase III RPC4
          7    5.4  17.1        8.2    5.2  17.1    1.0  1  NARP1            NMDA receptor-regulated protein 1
        7.1    6.7   7.1        7.5    6.7   7.1    1.1  1  DDHD             DDHD domain
        7.3    6.5  16.0        7.5    6.5  14.6    1.7  2  betaPIX_CC       betaPIX coiled coil
        7.9    6.5  11.1        8.6    6.3  11.1    1.1  1  TMEM119          TMEM119 family
        8.4    4.8   7.8        9.3    4.6   7.8    1.0  1  Herpes_UL25      Herpesvirus UL25 family


Domain annotation for each model (and alignments):
>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  14.7   6.6e-06    0.0035     139     208 ..       6      77 ..       2      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.6e-06
     U79_P34 139 cveklekegraldrkkaddeq..rkrsgkqkekrkvedidkkkedekrkeeerkksdedkssdkkeeldedP 208
                  v++le++   l +k a++e+  r+++     kr+ e+  +k+e+e+ +  +rk  ++d +sd+ ee++++P
  CDO70042.1   6 AVKQLEQQLEQLKKKVAEEEReaRRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDSGEEVEQEP 77 
                 688999999999999998875225666666779999*********************************999 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   7.7   4.8e-05     0.025      52     114 ..       8      69 ..       4      76 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.8e-05
      DUF755  52 sqLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrnvssrsakkksakkrkksssSSsssss 114
                 +qL q ++ql++k  ++++e  +++++ ++k+++++  ++r +++ +akkr k   S ++s+s
  CDO70042.1   8 KQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKR-KAPESDDESDS 69 
                 577777888866667777777777777777777777777777777777777.44444444433 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   7.3   0.00017     0.088      31      98 ..       6      72 ..       2      81 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1 31 evsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeesksssp 98
                +v++le++l++lkk ++eee    ++ +e e++++q+e +   +e+  ++ +k++a++s +es+s ++
  CDO70042.1  6 AVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEE-AARKREEERAQAKKRKAPESDDESDSGEE 72
                79999999999999999988877777779999985555.55555555566677777777766665544 PP

>> UPF0565  Uncharacterised protein family UPF0565
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.7   0.00017      0.09     113     179 ..       4      67 ..       1      82 [. 0.54

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
     UPF0565 113 akalkHLeklllnlsqrllkskkeneilekaavqaaasaaanaaaaaeaalklsnatksekelssks 179
                 a a+k Le+ l +l++++ ++++e +   ++a   + ++++++aa++ ++++ ++ ++++ e++ +s
  CDO70042.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEA---ERKRQQEEAARKREEERAQAKKRKAPESDDES 67 
                 6899**************98666655555555...33333333333332222222222222222222 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   5.2   0.00017     0.091       6      55 ..       3      55 ..       1      82 [. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00017
     DUF3619  6 ArkvaaaLdegaadlpediaeRLaaAReqAlarkkpe...aaaravaaalala 55
                A + +++L+++ ++l++++ae  ++AR+qA ++++++   +aar++ ++ a+a
  CDO70042.1  3 AADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRqqeEAARKREEERAQA 55
                6678899***********************88777552222233333333333 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  15.1   0.00096      0.51      62     127 ..       4      69 ..       1      82 [. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00096
        Vfa1  62 akkkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeeekkkelkk 127
                 a + k+le+++e++kk++ e++++ +++ ++ ++k +++++  k +e+  +++k k  e  +e ++
  CDO70042.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDS 69 
                 456677888899999988888887776666654444444444444444444444332222222222 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.3    0.0013      0.67      40      96 ..       4      60 ..       1      75 [. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
     DUF1664 40 sdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl 96
                +dav+++ +qleq+++++a+  r+  ++ ++ ++k ++ +++ k  +e  ++ +++ 
  CDO70042.1  4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKA 60
                79******************************9999988888777666666555555 PP

>> Baculo_PP31  Baculovirus 33KDa late protein (PP31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.3     0.002         1     197     264 ..       5      69 ..       1      74 [. 0.52

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.002
  Baculo_PP31 197 eafkkillklnekektaassasvvetaasksksrkRkeskkakkkkkkakkkkkkkseppavemvsDn 264
                  +a k++ ++l++ +k+ a +++     + ++++rkR++++ a+k+  ++++ + kk+++p+ + +sD+
   CDO70042.1   5 DAVKQLEQQLEQLKKKVA-EEEREARRQAEEAERKRQQEEAARKR--EEERAQAKKRKAPESDDESDS 69 
                  556666666644444444.34444444555667999999433333..344444444555666556665 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.5    0.0026       1.4      33      96 ..       5      68 ..       1      83 [. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0026
                HHHHHHHHHHHHHHHHCCCHHCHHTTTTTTHHHH------TT---SSS--THHHHHHHHH.... CS
        LCD1 33 eelekLkkevqkleDekkFlenElrslsetksqaskksaeedtdnsssvskKkRKieestaeda 96
                + +++L++++++l+ +    e+E+r+  e  +++ +++++  + +++ +++KkRK  es++e+ 
  CDO70042.1  5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESD 68
                56778888888888777777788888887446677777888888899999******99887765 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.5    0.0028       1.5      36      88 ..       6      58 ..       1      71 [. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0028
        HemX 36 evaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkq 88
                 v++l+qql++l++++a+ e e+++++e +er +q++e+  ++e+e +q +k+
  CDO70042.1  6 AVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKR 58
                4699**************99999999999999999988888888887776654 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.2    0.0032       1.7     334     400 ..       4      69 ..       1      84 [. 0.57

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0032
        ALMT 334 kvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeeaeaveeaeseseksl 400
                   a+++L+++l++  k  v+ e+ ea +++e+ae++++++e ++++e+++ +a+++++ es  e+++
  CDO70042.1   4 ADAVKQLEQQLEQLKK-KVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDS 69 
                 5678888888855443.45555556666666666666666666666665555555555544444433 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  12.5    0.0041       2.2     135     193 ..       7      61 ..       2      80 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0041
     DUF4407 135 laeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqld 193
                 +++le+q+++l++++++ e++++++ +ea+++ ++    ++ ++++++++a++kk+++ 
  CDO70042.1   7 VKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQ----EEAARKREEERAQAKKRKAP 61 
                 33333334444443333333333333333333332....22234444444444444443 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  13.8    0.0042       2.2      28      74 ..       6      57 ..       2      77 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0042
        YlqD 28 qieqldkelqqLefqakrlikeikkqsaq.....qieeiqeqvekekserle 74
                +++ql+++l+qL+ +  + ++e+++q ++     q+ee+  + e+e+++ ++
  CDO70042.1  6 AVKQLEQQLEQLKKKVAEEEREARRQAEEaerkrQQEEAARKREEERAQAKK 57
                5667777777777666666666666544322111222222222222222222 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  10.2    0.0041       2.1       8      66 ..       5      63 ..       1      76 [. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0041
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXX CS
        YabA  8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkel 66
                d++++le+qle+l+++++e ++e  +  ee ++ + + e  r+r ee+ +++k+k  e+
  CDO70042.1  5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPES 63
                67888888888888888888888888888888888888888888755555555544443 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.7    0.0046       2.4     182     243 ..      11      74 ..       1      84 [. 0.41

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0046
        PPL5 182 akgveeveeksskkkskekk..kklkkktsrkkkkegkkekesekeeededeeddlsdlvnvve 243
                 ++++e++++k  +++ + ++  +++++k ++++ +++++e+ +++++++  e dd sd  + ve
  CDO70042.1  11 EQQLEQLKKKVAEEEREARRqaEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDSGEEVE 74 
                 3333333333322222222200222222222222333333334444445555666666655555 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  18.9     0.008       4.2      31     109 ..       4      75 ..       1      81 [. 0.60

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.008
      CENP-Q  31 ldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleass 109
                  d+ ++le+qL+ +++++++ e+e +++ ++ er  ++    e+ a++ ++er + +k+    ++esd+e++s +e+++
  CDO70042.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQ----EEAARKREEERAQAKKR---KAPESDDESDSGEEVEQ 75 
                 56667777777777777776666666666666666555....66666666666663333...46666666666666555 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.1    0.0073       3.9     379     432 ..       5      58 ..       2      77 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0073
  Herpes_UL6 379 dtiekLkkenelllkklkelekeLerlreeakkeakarevdlltsstdaslenl 432
                 d++++L+++ e+l+kk++e e+e +r++eea+++++++e+    ++  a+ +++
  CDO70042.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKR 58 
                 899**********************99998888677666666655555544444 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  15.5    0.0084       4.4      59     127 ..       8      75 ..       4      84 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0084
     DUF4746  59 eplevkveveeeeelveevsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveeeeee 127
                 ++le++ e+ ++ +++ee+++ +++ e++e+++++++a  ++++  ++a++++a e+ +e  + ee+e+
  CDO70042.1   8 KQLEQQLEQLKK-KVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDSGEEVEQ 75 
                 567777777666.44444444433333333333333333333333233333333333333333333332 PP

>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  13.7    0.0086       4.6      19      78 ..      11      66 ..       3      79 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0086
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---.. CS
       ATP11 19 lesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekkesaakskkk 78
                 +++e+Lk++++++  e r++a++++ +++++e+++++e+++++++k    ++a +s ++
  CDO70042.1 11 EQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKK----RKAPESDDE 66
                46899999999999888888885544333322222222222222222....222222222 PP

>> PIEZO  Piezo
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.2    0.0095         5     111     167 ..       6      61 ..       2      78 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0095
       PIEZO 111 sleqlkrqmerikakqqkikkgkkeseeeelakeeeeeeeeaeeekkksekkkwwrP 167
                  ++ql +q+e++k+k    ++++++++ee  ++++++ee ++++e+++ + kk   P
  CDO70042.1   6 AVKQLEQQLEQLKKKVAEEEREARRQAEEA-ERKRQQEEAARKREEERAQAKKRKAP 61 
                 688999999999999886444433333333.22222323333333333444444444 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  18.6    0.0096         5      42     111 ..       8      76 ..       2      84 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0096
  Spore_coat_CotO  42 kekkdeaeekkpekaveeeveqekkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqetveaekPeqe 111
                      k+ +++ e+  ++k +eee+e   ++e ae ++q+ee+++++ee+ +++++ + +e + e ++ e+ eqe
       CDO70042.1   8 KQLEQQLEQ-LKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDSGEEVEQE 76 
                      333444443.344556667888888888999999999999999999999999999999999988777776 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.7    0.0089       4.7      63     124 ..       5      62 ..       2      83 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0089
       XRN_M  63 drveklvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvak 124
                 d v++l +++++  +k+ ++ +e ++++e+ + k+++++++ + +ee+a+a++++      +
  CDO70042.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRK----APE 62 
                 4566666666666666665444443333333333322222222222222222211....111 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  15.5    0.0098       5.2      11      61 ..       4      54 ..       1      75 [. 0.67

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0098
                HHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHH CS
        GrpE 11 edeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfai 61
                +d+ ++le++le+l+k+v+e + +  r+++e+e  r++ e  ++  ++ a 
  CDO70042.1  4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQ 54
                567788888888888888888888887777777655555433333333332 PP

>> TSA  Type specific antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.5    0.0098       5.2     340     416 ..       3      79 ..       1      84 [. 0.77

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0098
         TSA 340 aaaavrllngsdslkdlykdlvklrrhagikkamekladqeeedaknqdk..adckkaqgaeekskkdkkkeaefdlsm 416
                 aa av+ l  +++l++l k ++  +r a  +    +   q+ee a+++++  a+ kk++  e   + d+++e e +  +
  CDO70042.1   3 AADAVKQL--EQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEerAQAKKRKAPESDDESDSGEEVEQEPGL 79 
                 56677766..59999*****99999999877666666777777777665557999999999999999999999976555 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.5     0.012       6.3     110     154 ..       4      48 ..       1      49 [. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
  EMP24_GP25L 110 kekletleselkkleekldsikreqkylrereerlrdtnestnsr 154
                   + +++le++l++l++k+ + +re + + e  er r++ e + +r
   CDO70042.1   4 ADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKR 48 
                  57899*******************************999887765 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  21.0     0.011       5.7      17      74 ..       3      62 ..       1      78 [. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHH.HHHHHHHHHH CS
        OmpH 17 gkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqe.lqkkeqelqq 74
                + +a +qle++ ++l+++++++e+e ++++ee ++k +++ + +++e+e  q+k+++  +
  CDO70042.1  3 AADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEeAARKREEErAQAKKRKAPE 62
                5789999**************************998888755444444457777777665 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.9     0.014       7.5      90     146 ..       5      58 ..       2      78 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
  Folliculin  90 eafeklaaeiqalaeaelereskeeeassaassssalkadgsglsrregssfslske 146
                 +a+++l +++++l ++++e+e++ ++++++a   ++++++++++++re+++ + +k+
  CDO70042.1   5 DAVKQLEQQLEQLKKKVAEEEREARRQAEEA---ERKRQQEEAARKREEERAQAKKR 58 
                 6778888999999999998887755443333...33333333333333333332322 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  12.2     0.014       7.3     747     796 ..      14      69 ..       3      81 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.014
        Rrn6 747 le......aeeqrqrarrkrekrrrrkeklklasraeasssssssqssssksssss 796
                 le      aee+r+++r+++e  r+r+++ ++++r+e+  +++++++  s+ +s+s
  CDO70042.1  14 LEqlkkkvAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESDS 69 
                 33344566666688888888888888888777777776666666666555554444 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.8     0.015         8      17      71 ..      18      69 ..       5      82 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
  RNA_pol_Rpc4 17 kqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkk 71
                  k k+v ++e ++++++++  +++k ++e++a k++++ a+ kk k+++s++++++
    CDO70042.1 18 K-KKVAEEEREARRQAEE--AERKRQQEEAARKREEERAQAKKRKAPESDDESDS 69
                  2.2333333333333333..33333333333333333333333333333333332 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  17.1     0.015       8.2     404     464 ..      12      73 ..       2      81 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
                 -S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-.SSSTT CS
       NARP1 404 elseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededp.lgekL 464
                 +  e+ +kk+++  + a+++ae++e +++++e+++k++e++a++++++a + d++   ge+ 
  CDO70042.1  12 QQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDDESdSGEEV 73 
                 33334455555555555555555555555555554444444444444444444333145544 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.1     0.014       7.5     108     163 ..      10      65 ..       1      84 [. 0.31

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
        DDHD 108 lvsslsallnrslelaeeesaslaessksherasesskasqeskaaesstasssak 163
                 l ++l++l +++ e ++e + +++e++++ +++++++k+++e+++a++++a++s +
  CDO70042.1  10 LEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAKKRKAPESDD 65 
                 22222222122222111111111112222222222222222222222222222222 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  14.6     0.014       7.5      42      83 ..       5      47 ..       2      52 .. 0.81
   2 ?   -1.0   2.2         3   1.6e+03      59      72 ..      40      53 ..      35      69 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
  betaPIX_CC 42 devqelkqenkklkksl.eeEqkaRkdLEkvvrkllksindet 83
                d v++l+q++ +lkk++ eeE+ aR++ E+  rk  ++    +
  CDO70042.1  5 DAVKQLEQQLEQLKKKVaEEEREARRQAEEAERKRQQEEAARK 47
                89***********9877478889*******9999877655555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3
  betaPIX_CC 59 eeEqkaRkdLEkvv 72
                ++E+ aRk+ E+  
  CDO70042.1 40 QQEEAARKREEERA 53
                57888888877643 PP

>> TMEM119  TMEM119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.1     0.016       8.6     168     231 ..       2      66 ..       1      88 [. 0.69

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.016
     TMEM119 168 asGdgarvvegkseeeekggqevdeeaqgsgvpaekpeveeepcsaeaeaalaa.gegegepega 231
                 +  d+++++e++ e+ +k  +e+++ea+ ++  ae++  +ee++    e+ ++a +++ +e +  
  CDO70042.1   2 SAADAVKQLEQQLEQLKKKVAEEEREARRQAEEAERKRQQEEAARKREEERAQAkKRKAPESDDE 66 
                 56799*******99999999999*********999999999986666555444413333333222 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.8     0.018       9.3      53     113 ..       9      70 ..       3      82 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.018
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX CS
  Herpes_UL25  53 alraeLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaar..pplspssaspl 113
                   l++ L++l++k+++  +e++r+ +e+E++ + + e+ +  ++e+a+a++  +p s+ ++  +
   CDO70042.1   9 QLEQQLEQLKKKVAEEEREARRQAEEAERKRQ-QEEAARKREEERAQAKKrkAPESDDESDSG 70 
                  47899999999999999999999999999988.445546666666666664433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4057  (0.226281); expected 358.6 (0.02)
Passed bias filter:                     1725  (0.0962128); expected 358.6 (0.02)
Passed Vit filter:                       501  (0.0279436); expected 17.9 (0.001)
Passed Fwd filter:                        85  (0.00474092); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 578.84
//
Query:       CDO70043.1  [L=30]
Description: hypothetical protein BN946_scf184650.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 199.32
//
Query:       CDO70044.1  [L=580]
Description: hypothetical protein BN946_scf184650.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-35  122.0   0.1    8.1e-35  119.2   0.0    2.3  2  EFG_IV       Elongation factor G, domain IV
    2.2e-30  104.6   0.0    4.7e-30  103.5   0.0    1.6  1  EFG_II       Elongation Factor G, domain II
      5e-23   80.9   0.1    1.1e-22   79.8   0.1    1.7  1  EFG_C        Elongation factor G C-terminus
    1.2e-12   48.0   0.0    2.7e-12   46.9   0.0    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.7e-09   37.5   0.0    3.2e-09   36.6   0.0    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      1e-06   28.6   0.0    2.2e-06   27.5   0.0    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain
     0.0018   18.3   0.0      0.045   13.8   0.0    2.3  2  SBDS_C       SBDS protein C-terminal domain
  ------ inclusion threshold ------
       0.07   13.1   0.0       0.37   10.8   0.0    2.0  2  SFTA2        Surfactant-associated protein 2
       0.11   12.2   0.0       0.21   11.3   0.0    1.4  1  DUF1367      Protein of unknown function (DUF1367)


Domain annotation for each model (and alignments):
>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   4.1e-38   8.1e-35       1     120 [.     355     477 ..     355     478 .. 0.98
   2 ?   -0.5   0.0       0.5     1e+03      51      71 ..     486     506 ..     485     523 .. 0.79

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 4.1e-38
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT....TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE- CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle....egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgsl 95 
                 p+Va+rEti+++++ + +++kkq+gg+gqya+vi  ieP+      g+  efv+++ gg++p +yi+avekGf eal++G l g p+ +++++L dg  
  CDO70044.1 355 PRVAFRETITQRAD-FFYTHKKQTGGAGQYARVIGFIEPMAmneeTGKDTEFVNQVMGGNIPSNYIPAVEKGFYEALEKGSLSGNPICGCRFVLNDGLA 452
                 89************.************************999998999*************************************************** PP

                 -TTTC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  96 hevdsseaafkpaarralkeallkA 120
                 h+vdsse+af+ a+  a++e + +A
  CDO70044.1 453 HSVDSSELAFRLATIGAIREVYNAA 477
                 ********************99888 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.5
                 --STCCCHCCCCHHHHCCCCC CS
      EFG_IV  51 etkggqvpkeyieavekGfqe 71 
                 +t++++ p e+++av  G+++
  CDO70044.1 486 MTVEVVAPSEFQSAVIGGLNQ 506
                 5889999*********99976 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   2.4e-33   4.7e-30       1      75 []     281     354 ..     281     354 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 2.4e-33
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75 
                 +PePvisla++p   a++ ++s+aL+r+++EDpt+rv+ d+e+keti+sGmGelHlei+ver+krey+ve+++gk
  CDO70044.1 281 VPEPVISLALKPVG-AETPNFSRALNRFQKEDPTFRVHIDKESKETIISGMGELHLEIYVERMKREYNVECTTGK 354
                 8***********75.67899***************************************************9985 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.1   5.7e-26   1.1e-22       1      88 [.     480     566 ..     480     567 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 5.7e-26
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 ++lEPi++ve+ +p+e++++vi+ l++rrG+i d e + ++ ++  ae+ l++++g+++ Lr +T+G+g+fsme++ +++v  +++ e
  CDO70044.1 480 IILEPIMTVEVVAPSEFQSAVIGGLNQRRGTIVDSEVR-EDEFTCIAEVALNDMFGYSSHLRGITQGKGEFSMEYKTHQPVLPQVQAE 566
                 59************************************.9999**************************************9998865 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.3e-15   2.7e-12       1      74 []     202     268 ..     202     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.3e-15
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G+++++rvy+Gt++kG+ ++    +t+kk   +++ +l ++h +e e++ +   G i+ai g+++a   Gdt+t
   CDO70044.1 202 GQLTYMRVYQGTMRKGQFIYH--ARTGKK---VKVPRLVRMHSNEMEDIQEIGPGEICAIFGIDCA--SGDTFT 268
                  7899*****************..******...*********************************7..9**985 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.6e-12   3.2e-09     119     193 ..       2     158 ..       1     159 [. 0.84

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.6e-12
                 HHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH................................................................ CS
    GTP_EFTU 119 lkegvpiivfiNKmDrlkaelkeiveevkqklsrk................................................................ 153
                 ++++vp+i fiNKmDr++a+  +++++++qkl+ +                                                                
  CDO70044.1   2 RRYNVPRISFINKMDRPGANPWRVINQIRQKLKISaaavqvpigveddlrgvvdlvrwkaiynegekgnkvvesdeipaevlelarekrrelieqlaev 100
                 789*****************************777**********************999999999999999999999999998888887777666666 PP

                 ...........HHHHHHHHHTTT.................TTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 ...........eeklekygekge.................kevpvvfgSalkgegvktllealvellp 193
                            e          +                 k+ pv+ gSa+k+ +v++ll+ +  +lp
  CDO70044.1 101 ddeigemlimdE----------DpntqqladairratislKFSPVFLGSAIKNTAVQPLLDGVCAYLP 158
                 666555555540..........0445555555666667778***********************9998 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.1e-09   2.2e-06       7      92 ..     280     366 ..     274     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.1e-09
                 E--SEEEEEEESSG.GGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-S CS
       RF3_C   7 FaPElfarvrlkdp.lkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvese 92 
                 F PE   ++ lk +  ++ +++++l+ +++E  +   + +++++e+i++ +G+L +e+  eR+k+EY+ve+++ + ++ +   ++++
  CDO70044.1 280 FVPEPVISLALKPVgAETPNFSRALNRFQKEDPTFRVHIDKESKETIISGMGELHLEIYVERMKREYNVECTTGKPRVAFRETITQR 366
                 66666655555554245678999******999888888887899***************************9998888887777654 PP

>> SBDS_C  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12   2.3e+02      50      89 ..      24     100 ..      20     136 .. 0.79
   2 !   13.8   0.0   2.3e-05     0.045      31     109 ..     290     396 ..     259     406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
                 HHHHHHTTTS--EE-EEEEEEEE-.......................................CCCHHHHHHHH.HH CS
      SBDS_C  50 evikaLiqeipiqrarmrlritcptsi....................................kdkilklieqv.es 89 
                  vi++++q+++i  a +++ i +++                                      ++k  +lieq+ e+
  CDO70044.1  24 RVINQIRQKLKISAAAVQVPIGVEDDLrgvvdlvrwkaiynegekgnkvvesdeipaevlelaREKRRELIEQLaEV 100
                 589999**************999987788888888888888888888888888887777777777777777777444 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.3e-05
                 H...................HHTT----TTS-CCCCHHHHHHHHTTTS--EE-EEEEEEEE-...........CCCHHHHHHHHHH.....S..EEEEE CS
      SBDS_C  31 l...................kelgtsvktnksaksQalevikaLiqeipiqrarmrlritcptsi........kdkilklieqvesqkvaeke.wevvv 101
                 l                   ++  ++v+++k +k+ +   + +L+ ei ++r + + +++c+t +          +   ++ ++++q    ++   v++
  CDO70044.1 290 LkpvgaetpnfsralnrfqkEDPTFRVHIDKESKETIISGMGELHLEIYVERMKREYNVECTTGKprvafretITQRADFFYTHKKQTGGAGQyARVIG 388
                 4666666666666666666557789*************************************8888888855533333344444333322222367999 PP

                 EEEGGGHH CS
      SBDS_C 102 liePgayk 109
                 +ieP a +
  CDO70044.1 389 FIEPMAMN 396
                 9**98865 PP

>> SFTA2  Surfactant-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.37       5      49 ..     126     170 ..     124     175 .. 0.91
   2 ?   -0.9   0.0      0.83   1.7e+03       2      37 ..     187     222 ..     186     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
       SFTA2   5 vtlqlKLkesflansSydssflelLeKlCllLhLPsGTnvTLhha 49 
                  t+ lK    fl+    ++  + lL+ +C  L  Ps T v  h  
  CDO70044.1 126 ATISLKFSPVFLGSAIKNTAVQPLLDGVCAYLPTPSETKVVAHDT 170
                 6899************************************98875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
       SFTA2   2 GPgvtlqlKLkesflansSydssflelLeKlCllLh 37 
                  P v l  KL+e   +++ y   ++  + K  ++ h
  CDO70044.1 187 APLVALAFKLEEGRFGQLTYMRVYQGTMRKGQFIYH 222
                 68999*******999999998888887777666665 PP

>> DUF1367  Protein of unknown function (DUF1367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.21     106     153 ..     342     390 ..     317     402 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
     DUF1367 106 kkRaekl.isidksldafrewvtveaGfydivelpdGslkkeaksisfa 153
                  kR+ ++  ++ k + afre +t +a f+  ++ + G+  + a+ i f 
  CDO70044.1 342 MKREYNVeCTTGKPRVAFRETITQRADFFYTHKKQTGGAGQYARVIGFI 390
                 3555565577889999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 3645.71
//
Query:       CDO70045.1  [L=121]
Description: hypothetical protein BN946_scf184650.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-25   89.0   0.1    3.5e-25   88.7   0.1    1.0  1  GTP_EFTU  Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.1   1.9e-29   3.5e-25       4      80 ..      30     117 ..      27     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.9e-29
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST...HCHSHHHHHHTSCSSCEEEEEE........TTCSSEEEEEEEESSS CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv...lDtlkeErergiTiksaaisle........ketkkylinliDtPGH 80 
                 rnig+ +h+D+GKtTLt+r+ly+tg+i++ +e+++ ++v   +D+++ Ere+giTi+saa+ ++         +++ky in+iDtPG 
  CDO70045.1  30 RNIGVSAHIDSGKTTLTERILYYTGRIREIHEVRGRDNVgakMDSMELEREKGITIQSAATFCDwvatmpatGDKEKYAINIIDTPGE 117
                 9*********************************55444455**************************998549*************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 798.55
//
Query:       CDO70046.1  [L=340]
Description: hypothetical protein BN946_scf184650.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-45  155.1   0.0    7.6e-43  147.1   0.0    2.7  1  S1-P1_nuclease  S1/P1 Nuclease


Domain annotation for each model (and alignments):
>> S1-P1_nuclease  S1/P1 Nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   0.0   4.2e-47   7.6e-43       1     252 [.      21     333 ..      21     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 4.2e-47
                     --HHHHHHHHHHHHCCS-HHHHHHHHHHCTGGCTTTCGGGTTHHHHHTT.STTTGGGGGGG-EEE-SC-HHHHS..B-.TT..CT-SHHHHHHHH CS
  S1-P1_nuclease   1 WgkeGHrtvaeiAqklLspkaakavkellkeeasedlaqvatwaDeiksatkkyretspwHyidtpdekysrdc..kdaekekkegcvvsaienl 93 
                     Wg+ GH+tv+++Aq++L p+a + v++ l+++ s +l  +a waD++++++  y++++p+Hy+d++d+  s++c  ++++++ +++c+++ai+n+
      CDO70046.1  21 WGTLGHQTVGYVAQEFLAPNALAFVQSSLGSTYSGSLGPAAPWADTVRDES-GYTWSAPLHYVDAEDSPLSDSCsvQEQRDCGSGRCILTAIANY 114
                     *******************************99****************66.5**************8455555115566799************ PP

                     HHHHCCTT.TTTH.HHHHHHHH..HHHHHCTSGGGGEECGGHCCTTT-EEEETTEEEEHHHHHHTHHH.....HHHHCCTSC............. CS
  S1-P1_nuclease  94 tselkdkkaskaqraealkflv..HfvGDiHqPLHtagreedrGGNkikvqfegkktnLHsvWDseii.....ekiseeksr............. 168
                     t++++ ++ s++qr+ealkfl   H +         +g++ + GGN+i+ +  gk+tnLH+v Ds        +++     +             
      CDO70046.1 115 TTRVATTSLSATQRQEALKFLGkqHSIPN---GKWLTGFAYEVGGNDISAKCSGKSTNLHAVSDSRYApftgvNDAL----Nqawgttlglnidd 202
                     *******************8852244433...233578899************************988543222223....246779******** PP

                     ...CCHHHHHHHHHHHHHCCCHHHCC............................................CH.HHHHHHHHHHHHHHHTTSTTHH CS
  S1-P1_nuclease 169 ..lsalkeladaleakikseevkswe............................................kl.saeawakesnelackvvykgae 216
                         a+k++a++l a+ik+  +ks +                                            +l ++ +wa+e+n++ c+vv+   +
      CDO70046.1 203 nhGGAVKTYAADLIARIKNGSYKSLTgdwlsctsttepvskrtdgtahgveedvkrllartedaaeatitPLeCPLVWAREANAYCCSVVFTYTT 297
                     9977778888888888885555555555557777777777778888888888888888888888888898666*****************98887 PP

                     CCHCCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  S1-P1_nuclease 217 sgetlsdeYyekalpvveeqlakaGvRLAavLnkil 252
                      +   +++Yy++a+pv++ qla  G+RLAa+Ln i+
      CDO70046.1 298 GEDLCTSDYYTNAVPVIDLQLATQGYRLAAWLNVIF 333
                     77778999*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2436.07
//
Query:       CDO70047.1  [L=424]
Description: hypothetical protein BN946_scf184650.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3312.77
//
Query:       CDO70048.1  [L=559]
Description: hypothetical protein BN946_scf184650.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-23   81.5  11.2    4.4e-05   24.2   0.6    7.1  7  WD40         WD domain, G-beta repeat
    7.2e-07   29.4   4.3       0.13   12.6   0.1    4.4  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.5e-05   23.4   0.0       0.41    9.6   0.0    3.6  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.019   15.1   0.0        3.1    8.0   0.0    2.7  2  DUF3567      Protein of unknown function (DUF3567)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.3e-05      0.15       8      38 .]     233     264 ..     226     264 .. 0.85
   2 !   24.2   0.6   9.8e-09   4.4e-05       3      38 .]     274     312 ..     272     312 .. 0.86
   3 !    9.2   0.2   0.00054       2.4       7      36 ..     330     362 ..     324     362 .. 0.67
   4 ?   -1.9   0.0       1.7   7.5e+03       6      19 ..     375     389 ..     373     391 .. 0.69
   5 !    8.2   0.0    0.0011       4.8       3      37 ..     402     432 ..     400     432 .. 0.71
   6 !   16.7   0.0   2.3e-06      0.01       6      37 ..     446     482 ..     442     482 .. 0.84
   7 !   10.4   0.3   0.00022      0.99      13      38 .]     519     544 ..     505     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-05
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 t H + +++ + + +g+ la++s D+tv+++d
  CDO70048.1 233 TSHEDmIHDAQLDYYGKRLATCSSDRTVKVFD 264
                 56855699999999********88******98 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 9.8e-09
                 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 + +tl+GH ++v+ +a   ++ g+ las+s+Dg+v iW+
  CDO70048.1 274 TGHTLKGHtGPVWQVAwaHPKFGQILASCSYDGKVFIWK 312
                 579*****888****7777777777*************6 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00054
                 EESS.SSEEEEEEETTSSE........EEEEETTSEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw........lasGsdDgtvri 36 
                  t H  sv+s++      w        la++s Dgt+ +
  CDO70048.1 330 HTLHkASVNSVS------WaphelgaiLACASSDGTISV 362
                 4457667****5......555555565887777***975 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.7
                 EEESSSSE..EEEEEE CS
        WD40   6 tltGHssv..tslafs 19 
                 +++GH  +  +++++ 
  CDO70048.1 375 VFEGH-AIgcNAVSWA 389
                 689**.6544888665 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0011
                 EEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHss..vtslafspdgawlasGsdDgtvriW 37 
                 +  t  G+++  v s+      + +as++ D+ v+iW
  CDO70048.1 402 PSNTVPGQQPaaVQSV------KRFASAGCDNLVKIW 432
                 5567778844569999......66665544******* PP

  == domain 6  score: 16.7 bits;  conditional E-value: 2.3e-06
                 EEESS.SSEEEEEEETTSSE..........EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw..........lasGsdDgtvriW 37 
                 +l+GH ++v+++      aw          +a++s D+tv iW
  CDO70048.1 446 VLEGHtDWVRDV------AWapniglprsyIATASQDKTVLIW 482
                 689**777****......555555559999************* PP

  == domain 7  score: 10.4 bits;  conditional E-value: 0.00022
                 EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  13 vtslafspdgawla.sGsdDgtvriWd 38 
                 v+ +++s  g+ la s++ Dg+v +W+
  CDO70048.1 519 VWRVSWSLAGNILAvSCG-DGKVTLWK 544
                 799*9*******975788.*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0069        31      47      76 ..     245     274 ..     231     293 .. 0.75
   2 ?    0.4   0.0      0.18   8.1e+02      36      65 ..     280     311 ..     270     315 .. 0.78
   3 !    9.7   0.0   0.00023       1.1      35      69 ..     331     367 ..     322     381 .. 0.83
   4 ?   -2.6   0.0       1.6   7.1e+03      35      49 ..     448     462 ..     427     481 .. 0.63
   5 !   12.6   0.1   2.9e-05      0.13      41      66 ..     519     544 ..     509     554 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0069
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhsl 76 
                     gk La   sd +v+++d+ +g++ +s 
   CDO70048.1 245 DYYGKRLATCSSDRTVKVFDVVDGETQRST 274
                  5679********************987554 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
  ANAPC4_WD40  36 kedsevrsLaWkpd..gklLavaysdgevrll 65 
                  ++ + v ++aW +   g++La    dg+v + 
   CDO70048.1 280 GHTGPVWQVAWAHPkfGQILASCSYDGKVFIW 311
                  56778889999753349**********99875 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00023
  ANAPC4_WD40  35 dkedsevrsLaWkpd..gklLavaysdgevrlldaes 69 
                  + ++ +v+s++W p   g +La a sdg++++l  ++
   CDO70048.1 331 TLHKASVNSVSWAPHelGAILACASSDGTISVLTFKN 367
                  557899******8764489************998776 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.6
  ANAPC4_WD40  35 dkedsevrsLaWkpd 49 
                  +++   vr++aW p+
   CDO70048.1 448 EGHTDWVRDVAWAPN 462
                  445566778888776 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlld 66 
                  v  ++W+  g++Lav++ dg+v l +
   CDO70048.1 519 VWRVSWSLAGNILAVSCGDGKVTLWK 544
                  66799*****************9975 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.3   5.7e+03      34      77 ..     123     164 ..     108     166 .. 0.80
   2 !    9.6   0.0   9.1e-05      0.41     181     235 ..     230     283 ..     204     288 .. 0.80
   3 !    3.6   0.0    0.0058        26      61     128 ..     278     344 ..     270     367 .. 0.70
   4 !    7.6   0.0   0.00035       1.6     117     219 ..     450     548 ..     439     553 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.3
    Ge1_WD40  34 layaikvkntgeglvrvvnketeeraLlkglkgevldlafahvs 77 
                 l yai+    g g+  +++  t+ + L   l+gev+   fa v+
  CDO70048.1 123 LWYAIEFP--GTGVFGIIDFFTTPKGLGVHLEGEVAKALFAKVD 164
                 66888877..5899999999999999999999999999999876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 9.1e-05
    Ge1_WD40 181 llkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdG 235
                  ++ +++ +i +a +   G  lat+s+d +vk f v   +e+++   h  k h G
  CDO70048.1 230 PIETSHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVV-DGETQRSTGHTLKGHTG 283
                 355566679**************************96.45566667799998887 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0058
    Ge1_WD40  61 lkglkgevldlafahvss.killavdekgslfvykveeveskllvslllkveapietvvsesdrviWCP 128
                 lkg +g v  +a+ah +  +il++  + g++f++k +  ++        k+++ ++ + ++++ v+W P
  CDO70048.1 278 LKGHTGPVWQVAWAHPKFgQILASCSYDGKVFIWKEQPSQGP-GAGGWTKIKE-HTLHKASVNSVSWAP 344
                 799999999999999886256678999999999997666544.3344556655.444555556666666 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00035
    Ge1_WD40 117 vvsesdrviWCPyipeedaeesdddeaskllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsliveaafspdGtalatasedGevkffq 215
                 ++  ++ v W P i    + + ++ + + +l++ + + +  w  +++    +   +  +++  g +       +   ++s  G  la+++ dG+v +++
  CDO70048.1 450 HTDWVRDVAWAPNIGLPRSYIATASQDKTVLIWIKDSPTAPWVKTALDPSASASTTAGASAPAGKF----PDVVWRVSWSLAGNILAVSCGDGKVTLWK 544
                 566678899999999999889999999999999999999999877777777777777777777755....34788999******************998 PP

    Ge1_WD40 216 vyle 219
                  +l+
  CDO70048.1 545 ENLK 548
                 7665 PP

>> DUF3567  Protein of unknown function (DUF3567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0007       3.1      39      67 ..      32      60 ..       8      66 .. 0.84
   2 ?    4.0   0.0     0.012        55      43      67 ..     148     172 ..     115     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0007
     DUF3567 39 rakkeiyldGslAesfrkevkalieeeps 67
                +++++ ++dG++A+ +r++ +al +++p+
  CDO70048.1 32 ESGRKAHIDGKVADALRANANALLSQAPD 60
                57899********************9997 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
     DUF3567  43 eiyldGslAesfrkevkalieeeps 67 
                  ++l+G++A+ + ++v++l e +p+
  CDO70048.1 148 GVHLEGEVAKALFAKVDELLEGTPD 172
                 599*****************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4291.89
//
Query:       CDO70049.1  [L=533]
Description: hypothetical protein BN946_scf184601.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-51  173.5   0.2    6.9e-42  143.9   0.0    2.7  2  PIF1             PIF1-like helicase
    7.9e-25   87.7   0.0    1.2e-24   87.1   0.0    1.3  1  AAA_30           AAA domain
    2.1e-12   47.6   0.0    4.8e-12   46.4   0.0    1.6  1  AAA_19           AAA domain
    1.1e-06   29.0   0.0    2.3e-06   27.9   0.0    1.5  1  AAA_22           AAA domain
    3.1e-05   23.8   0.3     0.0052   16.6   0.2    3.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00036   20.9   0.1     0.0013   19.1   0.1    1.9  2  AAA_16           AAA ATPase domain
    0.00044   20.3   0.0     0.0015   18.5   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00071   18.7   0.1     0.0017   17.5   0.1    1.5  1  T2SSE            Type II/IV secretion system protein
    0.00077   19.0   0.1     0.0019   17.7   0.1    1.6  1  AAA_7            P-loop containing dynein motor region
     0.0017   18.2   0.1       0.28   10.9   0.0    2.5  2  AAA_11           AAA domain
     0.0019   18.1   0.3     0.0094   15.9   0.0    2.1  2  NACHT            NACHT domain
     0.0029   17.3   0.0     0.0067   16.1   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
     0.0051   14.8   0.2        0.1   10.5   0.0    2.4  3  Herpes_Helicase  Helicase
     0.0055   16.2   0.0      0.011   15.2   0.0    1.5  1  PhoH             PhoH-like protein
     0.0068   15.8   0.0      0.011   15.2   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.014   15.9   0.0      0.037   14.5   0.0    1.7  1  ABC_tran         ABC transporter
      0.015   15.1   0.3      0.068   13.0   0.3    2.1  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.022   14.6   0.1      0.052   13.5   0.1    1.6  1  RsgA_GTPase      RsgA GTPase
      0.024   14.4   0.1      0.052   13.3   0.1    1.5  1  Sigma54_activat  Sigma-54 interaction domain
      0.041   13.6   0.0       0.14   11.9   0.0    1.8  2  AAA_24           AAA domain
      0.046   13.0   0.0      0.076   12.2   0.0    1.4  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.054   13.9   0.0       0.14   12.6   0.0    1.8  1  RNA_helicase     RNA helicase
      0.063   12.2   0.0       0.11   11.4   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.064   13.2   0.0       0.14   12.2   0.0    1.5  1  ResIII           Type III restriction enzyme, res subunit
      0.068   13.0   0.2       0.23   11.3   0.2    1.8  1  Helicase_RecD    Helicase
      0.072   13.1   0.0       0.29   11.2   0.0    1.9  1  AAA_14           AAA domain
       0.08   13.4   0.0       0.19   12.1   0.0    1.7  1  AAA              ATPase family associated with various cellul
      0.082   11.9   0.2       0.14   11.1   0.2    1.3  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.11   12.4   0.0       0.61   10.0   0.0    1.9  2  ATPase_2         ATPase domain predominantly from Archaea
       0.12   12.9   0.0       0.24   11.9   0.0    1.6  1  AAA_23           AAA domain
       0.12   12.3   0.0       0.69    9.9   0.0    2.0  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   1.2e-44   6.9e-42       2     224 ..      66     273 ..      65     285 .. 0.85
   2 !   26.6   0.1   5.5e-09   3.2e-06     268     362 ..     292     367 ..     290     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 1.2e-44
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC....TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-..HHHHHHHTSC CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs....egkivlavAssGvAalllegGrtahsrfkiplekde..estckikrgs 94 
                 Ln+eQ +v++ +      ++ k++F+tG +G+gK+ l++a++++lr     + +++ ++As+G+Aa ++ gG t+hs   +  ++++   +   ik  +
  CDO70049.1  66 LNSEQVRVLQMV-----VQEEKSVFFTGAAGSGKSLLLRAIIAALRRkyakKPEVISVTASTGMAASNI-GGMTIHSWGAVTPGMHNvdRQISCIKTCK 158
                 899999999999.....456788999*******************98665455678899**********.*******9988654433003333599999 PP

                 CCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH--..EEEE-S-STTT CS
        PIF1  95 klaellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWkevk..vlkLtknmRll 191
                    +++k+t+++++DE++mv+ ++f++l +++  ++k+  +dkpFGG+++v+ GDf+Q++Pv+ k+  +  +a+   eS++Wk++   +++Lt+++R++
  CDO70049.1 159 PAFKRWKETKVLVIDEVSMVDGHLFDTLAKLAALLRKK--TDKPFGGIQLVVTGDFFQLPPVT-KSGEEPFFAF---ESEAWKRCIdhTVTLTQVYRQK 251
                 999*************************9988887776..48*********************.5556778888...*******8668*********** PP

                 T...........HHHHHHHHHHHCT---CCCCH CS
        PIF1 192 sesldetekkelkeFskwllkigdGkineedee 224
                 ++           +F ++l++++ G+i+ + ++
  CDO70049.1 252 DT-----------HFVQLLNELRRGTISPSAQQ 273
                 95...........8************9987765 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 5.5e-09
                 EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEE CS
        PIF1 268 ailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivt 362
                 ++l+p +++vd++N ++l+ lpg  ++++++Ds                    +++  +++++ +L Lk  ++vml++N+d+   L+NG+ + v 
  CDO70049.1 292 TELYPLRTQVDRANSTRLAALPGAPRTFVARDS--G---------------THQKMLEQMVVPAQLVLKSNAQVMLVKNVDER--LVNGSVGRVL 367
                 5799*****************************..1...............12355667788899******************..*****98886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   2.1e-27   1.2e-24       2     176 ..      66     270 ..      65     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 2.1e-27
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g...grviglAptgkaAkvLaeelgieastiakllkrlk............... 81 
                 ln+eQ ++++ ++++++  ++ tG+AG+GK+ +l+a+ +a++++     + + + A+tg aA +++      ++ti+++   +                
  CDO70049.1  66 LNSEQVRVLQMVVQEEK-SVFFTGAAGSGKSLLLRAIIAALRRKyAkkpEVISVTASTGMAASNIG------GMTIHSWGAVTPgmhnvdrqisciktc 157
                 89*******99999996.99*****************999888754664555699*******9999......344444443333444444555588899 PP

      AAA_30  82 ..grarlepgtllivDEagmvdtkqlaallkaaeka.........gakvilvGDerQlasVeaGg..vlrdlvea....agi.gtaeLtevvRqkesee 162
                   + +r+++ ++l++DE++mvd + +++l+k a+           g+++++ GD  Ql++V++ g  ++    e+    + i +t++Lt+v+Rqk++++
  CDO70049.1 158 kpAFKRWKETKVLVIDEVSMVDGHLFDTLAKLAALLrkktdkpfgGIQLVVTGDFFQLPPVTKSGeePFFAF-ESeawkRCIdHTVTLTQVYRQKDTHF 255
                 9977899999***********7666666555554422346669988****************9653433333.22223232259*************** PP

      AAA_30 163 raaalalregdae.e 176
                  ++ ++lr+g+++ +
  CDO70049.1 256 VQLLNELRRGTISpS 270
                 **********98853 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   8.2e-15   4.8e-12       8     144 ..      79     218 ..      72     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 8.2e-15
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.....ldfddlltealelle..eaeeekk 99 
                  +ek ++ t+ +G+GK+ +l++i+a l +    kpe i + a tg Aa+++   +         iH+ +       ++d+++    + ++  +    k 
  CDO70049.1  79 QEEKSVFFTGAAGSGKSLLLRAIIAALRRKYAKKPEVISVTASTGMAASNIGGMT---------IHSWGAvtpgmHNVDRQI----SCIKtcK-PAFKR 163
                 5788999********************************************9776.........443333222212334444....2223222.23344 PP

      AAA_19 100 lqeeellivDEfqdvd.elqyrL..lkallgekkk........lllvGDpdQliyv 144
                  +e+++l++DE+++vd  l  +L  l all +k +        l++ GD  Ql++v
  CDO70049.1 164 WKETKVLVIDEVSMVDgHLFDTLakLAALLRKK-TdkpfggiqLVVTGDFFQLPPV 218
                 55778***********99888883344555444.146999*99**********997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     4e-09   2.3e-06       4     123 ..      80     204 ..      77     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 4e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka..erlsseellealeqalraravielliiDE 99 
                 ++++++ tG +G+GK++llr +   l +     + ++pev++vt++ ++  +++  +  + +g  + +  + +++  +++++  a+++ + +++l+iDE
  CDO70049.1  80 EEKSVFFTGAAGSGKSLLLRAIIAALRRK----YaKKPEVISVTASTGMAASNIGGMTIHSWGAVTPGmhNVDRQISCIKTCKPAFKRWKETKVLVIDE 174
                 5788999******************9543....246***************************9999998888899999*********999******** PP

      AAA_22 100 aqhlr.s.eealeeLrsllnl....srkgv 123
                 +  ++ +  + l +L  ll         g+
  CDO70049.1 175 VSMVDgHlFDTLAKLAALLRKktdkPFGGI 204
                 ***954355555555444443444444555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2     9e-06    0.0052       4      86 ..      87     190 ..      84     278 .. 0.78
   2 ?    3.2   0.0      0.11        61     185     227 ..     461     496 ..     435     498 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9e-06
  Viral_helicase1   4 hGvpGcGKStlirkllrts.liltvnrptaelltegk.....................pklpnlsvrtvdsflmalvkstkgkililDEylllh 75 
                       G++G+GKS l+r ++    ++  + +p ++ +t++                      + + +++++ ++++ +a+++ ++ k+l++DE  +++
       CDO70049.1  87 TGAAGSGKSLLLRAIIAALrRKY-AKKPEVISVTASTgmaasniggmtihswgavtpgMHNVDRQISCIKTCKPAFKRWKETKVLVIDEVSMVD 179
                      7**************98865333.3344466666655778888899************9999*************99999************99 PP

  Viral_helicase1  76 aGyill.laals 86 
                       G +   la+l+
       CDO70049.1 180 -GHLFDtLAKLA 190
                      .55544365544 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhr 227
                      ++  h  qG+t ++  + l++      ++  + + +vAl+R+ 
       CDO70049.1 461 AMSIHKSQGQTIQHLKIDLRSV-----FE--KGQSYVALSRAA 496
                      6789999*****9999999944.....32..5567******96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.3e-06    0.0013      16      52 ..      74     109 ..      69     130 .. 0.81
   2 ?   -2.5   0.0       9.9   5.7e+03     138     162 ..     169     193 ..     160     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.3e-06
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellralekdg 52 
                 l++v + +  +v+++G++G+GKs l+r++  al++++
  CDO70049.1  74 LQMVVQEE-KSVFFTGAAGSGKSLLLRAIIAALRRKY 109
                 66666655.8********************9999983 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 9.9
      AAA_16 138 vlvlDdlqwadeaslqllaaLlrll 162
                 vlv+D++  +d +  + la L++ll
  CDO70049.1 169 VLVIDEVSMVDGHLFDTLAKLAALL 193
                 6777776666664444444444332 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.6e-06    0.0015       2      88 ..      84     189 ..      83     198 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-06
                 EEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------....................G-SEEEEESG CS
       AAA_5   2 vlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraar....................egeilvlDEv 74 
                 v+  G+ G+gKs l + + aal      + ev  v  + ++ ++++ g +        ++ ++++  +                     e ++lv+DEv
  CDO70049.1  84 VFFTGAAGSGKSLLLRAIIAALrrkyakKPEVISVTASTGMAASNIGGMTI-------HSWGAVTPGMHnvdrqisciktckpafkrwkETKVLVIDEV 175
                 899*******************66654444444455555555555544444.......4444444444455555555555668888999********** PP

                 GG--HHHHHHHHHH CS
       AAA_5  75 eraesevlnsLlsl 88 
                  +++ + +++L +l
  CDO70049.1 176 SMVDGHLFDTLAKL 189
                 ******99999776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.9e-06    0.0017     115     156 ..      67     108 ..      48     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.9e-06
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 + ++ +vl+  v+e++++ ++G+ gsGK+ ll a+++ +  +
  CDO70049.1  67 NSEQVRVLQMVVQEEKSVFFTGAAGSGKSLLLRAIIAALRRK 108
                 567889*****************************9998765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.3e-06    0.0019      24      63 ..      72     110 ..      57     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.3e-06
       AAA_7  24 yllelllknkkpvllvGptGtGKtviikdllkkldkekyl 63 
                  +l+++++++k+v+++G +G+GK+++++ ++ +l  +ky 
  CDO70049.1  72 RVLQMVVQEEKSVFFTGAAGSGKSLLLRAIIAALR-RKYA 110
                 5899*************************999998.4443 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00049      0.28       2      75 ..      66     134 ..      65     160 .. 0.84
   2 ?    4.9   0.0     0.034        20     212     260 ..     162     221 ..     152     222 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerll 75 
                 ln++q + ++ +++e++ + + G  G+gK+  + +++++l      ++ +++++ i v+a++  A  ++    +
  CDO70049.1  66 LNSEQVRVLQMVVQEEKSVFFTGAAGSGKSLLLRAIIAAL-----RRKYAKKPEVISVTASTGMAASNIGGMTI 134
                 8***************************************.....34677788888888888888888876555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.034
      AAA_11 212 eklakkfdvviIDEAaqa.....vEpstliPlrlga.......kkvvLvGDpkQLpatvis 260
                 ++ + + +v++IDE ++        ++ l +l+++         ++v  GD  QLp++++s
  CDO70049.1 162 KRWK-ETKVLVIDEVSMVdghlfDTLAKLAALLRKKtdkpfggIQLVVTGDFFQLPPVTKS 221
                 5554.66777777777762222123455566644445666776799************998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05    0.0094       3      31 ..      84     112 ..      82     126 .. 0.88
   2 ?   -0.6   0.0       1.9   1.1e+03      98     139 ..     246     289 ..     237     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpq 31 
                 v+ +G+aGsGK+ Ll+ ++ a+++++ ++
  CDO70049.1  84 VFFTGAAGSGKSLLLRAIIAALRRKYAKK 112
                 7899******************9998766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.9
                 CH...........HHHHHCTTTTT--EEEEEEECCCHHHHCTTS CS
       NACHT  98 gq..kekqpvrtlLselirkkllpeasllltvrpralrdleeql 139
                 +   ++ ++  +lL+el r+++ p+a    t+ +r l+ l+++l
  CDO70049.1 246 QVyrQKDTHFVQLLNELRRGTISPSAQQTFTSLSRPLSPLPSGL 289
                 3355688888999***********99999999999888887776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0067      19      46 ..      78     105 ..      67     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_29  19 idlkgatlltGpsGsGKSTllDAiqalL 46 
                 ++++ ++++tG+ GsGKS ll Ai+a L
  CDO70049.1  78 VQEEKSVFFTGAAGSGKSLLLRAIIAAL 105
                 4444489*****************9987 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.11        63      63      98 ..      85     129 ..      64     142 .. 0.74
   2 ?   -2.3   0.0       1.3   7.3e+02     188     211 ..     161     184 ..     150     187 .. 0.77
   3 !   10.5   0.0   0.00017       0.1     732     775 ..     460     501 ..     440     518 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
  Herpes_Helicase  63 litGtAGaGkstsiqalaenld........Cl.itgatvvAaqnl 98 
                        tG+AG+Gks  + a+ ++l          + +t++t +Aa n+
       CDO70049.1  85 FFTGAAGSGKSLLLRAIIAALRrkyakkpeVIsVTASTGMAASNI 129
                      67*********9888887777422222222223677777777776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
  Herpes_Helicase 188 speltesnviviDEaGllsrhiLt 211
                           e+ v+viDE  ++  h+  
       CDO70049.1 161 FKRWKETKVLVIDEVSMVDGHLFD 184
                      4456789*********99999875 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00017
  Herpes_Helicase 732 lamtiaksqGlslekvAicFgnhknlklssvYvalsRatdsefl 775
                       am i ksqG  +++  i+  +     + + YvalsRa + + l
       CDO70049.1 460 WAMSIHKSQGQTIQHLKIDLRSV--FEKGQSYVALSRAASLDGL 501
                      69******************998..9999*********987655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-05     0.011       5      51 ..      66     115 ..      64     184 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
                 -SHHHHHHHHHHH.H-SEEEEE--TTSSTTHH..HHHHHHHHHHTTS-SE CS
        PhoH   5 ktkeQkeylealk.kndivfaiGpaGtGKtyl..avalavealkkkkvkr 51 
                  ++eQ ++l+++  +++ vf +G aG+GK++l  a+ +a++   +kk + 
  CDO70049.1  66 LNSEQVRVLQMVVqEEKSVFFTGAAGSGKSLLlrAIIAALRRKYAKKPEV 115
                 578999***99886888*************99445555555444444444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-05     0.011       4      65 ..      63     126 ..      60     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
  Mg_chelatase   4 dvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllppl..seeealevakiasvag 65 
                   +v  ++e+ r+l++ +  + +++++G++GsGK++l +++ + l +   ++ e++ v++ + +a 
    CDO70049.1  63 QVSLNSEQVRVLQMVVQEEKSVFFTGAAGSGKSLLLRAIIAALRRKyaKKPEVISVTASTGMAA 126
                   6677888999**************************9999888764114446666666555554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.4e-05     0.037       5      35 ..      75     105 ..      71     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.4e-05
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagll 35 
                 ++ ++e + v ++G  G+GKS Ll++++  l
  CDO70049.1  75 QMVVQEEKSVFFTGAAGSGKSLLLRAIIAAL 105
                 67789999******************98765 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   0.00012     0.068       2      46 ..     459     496 ..     458     498 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAr 46 
                 a+a++ihk+QG+  ++  +   dl +    e  +   Y+a++RA+
  CDO70049.1 459 AWAMSIHKSQGQTIQHLKI---DLRSVF--E--KGQSYVALSRAA 496
                 8***********9988777...322222..1..445688888886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     9e-05     0.052      80     127 ..      61     109 ..      48     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9e-05
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  +   + ++e+++ l+ ++++ k +++ G  G GKS L+ a++  l+ k 
   CDO70049.1  61 CEQVSLNSEQVRVLQMVVQEeKSVFFTGAAGSGKSLLLRAIIAALRRKY 109
                  4444556889999*****99788999***********999988754443 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   8.9e-05     0.052      10      52 ..      69     111 ..      61     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.9e-05
                      HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat  10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekp 52 
                      e+++ +++v++ + sv+ tG  G+GK+ll rai +a +rk ++
       CDO70049.1  69 EQVRVLQMVVQEEKSVFFTGAAGSGKSLLLRAIIAALRRKYAK 111
                      66788999*************************9977776543 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.14       3      99 ..      82     200 ..      80     207 .. 0.75
   2 ?   -1.6   0.0       3.3   1.9e+03      48      81 ..     233     266 ..     214     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
      AAA_24   3 lkiliyGpsgiGKTtlakel..........gpkplfidtekGlksldadkfpdieswedfldevvel.............aaeladyktlviDtidele 78 
                 ++++ +G +g+GK+ l++ +          +p+++ +    G+++  ++ + +i+sw ++   +  +              + +++ k+lviD ++ + 
  CDO70049.1  82 KSVFFTGAAGSGKSLLLRAIiaalrrkyakKPEVISVTASTGMAA-SNIGGMTIHSWGAVTPGMHNVdrqisciktckpaFKRWKETKVLVIDEVSMVD 179
                 678899**********************55555555555556644.4444566888888877777777778888888888888888*********9987 PP

      AAA_24  79 elclaevirqnekaeskedkg 99 
                  + ++ + + +   ++k+dk+
  CDO70049.1 180 GHLFDTLAKLAALLRKKTDKP 200
                 777777766666666666665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
      AAA_24  48 swedfldevvelaaeladyktlviDtideleelc 81 
                 +w+ ++d  v+l + +++ +t ++  ++el + +
  CDO70049.1 233 AWKRCIDHTVTLTQVYRQKDTHFVQLLNELRRGT 266
                 8999999999999999999999998888887765 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013     0.076       3      35 ..      83     114 ..      81     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertav 35 
                  v+ tG+aG+GK+++l +++a+l+++   ++  
  CDO70049.1  83 SVFFTGAAGSGKSLLLRAIIAALRRKYA-KKPE 114
                 5788******************933332.2233 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00023      0.14       1      38 [.      84     119 ..      84     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00023
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrn 38 
                   ++++G++g GKS+l + +++al +k+   kk++v+s +
    CDO70049.1  84 VFFTGAAGSGKSLLLRAIIAALRRKY--AKKPEVISVT 119
                   6899*******************988..5556666633 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.11      13      42 ..      79     108 ..      72     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  TrwB_AAD_bind  13 retqhilivGttGsGKtqalekllrairar 42 
                    +e++ ++++G++GsGK+  l+++++a+r++
     CDO70049.1  79 QEEKSVFFTGAAGSGKSLLLRAIIAALRRK 108
                    68999**********************987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00024      0.14       7      56 ..      69     114 ..      37     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00024
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......- CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.k 56 
                  Q ++++ ++     +++k +++  a G+GK+l++ ++i++l++k+ ++ +
  CDO70049.1  69 EQVRVLQMVV-----QEEKSVFFTGAAGSGKSLLLRAIIAALRRKYAKKpE 114
                 4444444444.....7899999**********************9887644 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00039      0.23       3     111 ..      87     187 ..      85     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00039
  Helicase_RecD   3 tAdRGRGKSaalGlalaaliaegk...snilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadllv 95 
                    t++ G GKS +l  ++aal ++       i vta +  +++++  + +++  a++             + +v++q     + + + k+ +++++lv
     CDO70049.1  87 TGAAGSGKSLLLRAIIAALRRKYAkkpEVISVTASTGMAASNIGGMTIHSWGAVTPG-----------MHNVDRQISCIKTCKPAFKRWKETKVLV 171
                    7899********999999987765677889*************99998887765421...........12233444444445556666667899** PP

  Helicase_RecD  96 vDEAAaiplpllkkll 111
                    +DE ++++ +l ++l 
     CDO70049.1 172 IDEVSMVDGHLFDTLA 187
                    ******9999888776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0005      0.29       3      78 ..      82     180 ..      80     210 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0005
      AAA_14   3 kilvitGaRrvGKTtllkqlikell...vkkesilyinldderd...................kkladpekllelileklke........ekktylflD 71 
                 k ++ tGa  +GK+ ll+ +i  l    +kk +++ ++  +                             ++++ i    k+        +++++l++D
  CDO70049.1  82 KSVFFTGAAGSGKSLLLRAIIAALRrkyAKKPEVISVTASTGMAasniggmtihswgavtpgmH------NVDRQISCI-KTckpafkrwKETKVLVID 173
                 678899**************99888988888888888888866655566665555554443321......222222222.112235556889999**** PP

      AAA_14  72 Eiqevpe 78 
                 E+++v++
  CDO70049.1 174 EVSMVDG 180
                 ****954 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00034      0.19       1      68 [.      84     176 ..      84     199 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00034
                 EEEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCSSS................STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGG CS
         AAA   1 vllyGppGtGKTllakavakel......gvefleisgsellsk................yvgesekkirelfkeakeka.......kpsilfiDEid 68 
                 v ++G  G GK+ll +a++  l      + e++++ +s+ +                       ++++   ++ +k+ +       ++++l+iDE+ 
  CDO70049.1  84 VFFTGAAGSGKSLLLRAIIAALrrkyakKPEVISVTASTGMAAsniggmtihswgavtpG----MHNVDRQISCIKTCKpafkrwkETKVLVIDEVS 176
                 5789*****************955444435566666666663356777788877744441....444443333333333445556455899999985 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00025      0.14      29      73 ..      81     126 ..      57     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                 SEEEEEEE-TTSSHHHHHHHHHHHHHCT.T--EEEEEE-------- CS
        MeaB  29 aqvvGltGvPGaGkstlvealglelrrr.GkrvavlavDPsspftG 73 
                  + v +tG  G+Gks l+ a+++ lrr+  k+  v++v  s  ++ 
  CDO70049.1  81 EKSVFFTGAAGSGKSLLLRAIIAALRRKyAKKPEVISVTASTGMAA 126
                 567889*******************998356788999988876655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0011      0.61      20      48 ..      81     109 ..      69     132 .. 0.74
   2 ?   -0.4   0.0       1.5   8.8e+02     110     135 ..     158     183 ..     141     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienledkd 48 
                 ++ +f +G  gsGK+ Ll+ ii  l+ k 
  CDO70049.1  81 EKSVFFTGAAGSGKSLLLRAIIAALRRKY 109
                 4557889***************9996543 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.5
    ATPase_2 110 lekikkkgkkiiiiiDelqklidlgl 135
                 + + k+ +   +++iDe+ ++    +
  CDO70049.1 158 KPAFKRWKETKVLVIDEVSMVDGHLF 183
                 555666666689******99874444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00041      0.24      22      51 ..      84     113 ..      63     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00041
      AAA_23  22 tlItGpNGaGKTTildAiklaLygetprls 51 
                 + +tG  G+GK+ +l+Ai  aL  + ++ +
  CDO70049.1  84 VFFTGAAGSGKSLLLRAIIAALRRKYAKKP 113
                 689******************977766555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0012      0.69      18      46 ..      78     108 ..      62     120 .. 0.73
   2 ?   -1.0   0.0       2.8   1.6e+03      83     108 ..     504     529 ..     492     532 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgve 46 
                 +  ++ ++++G  G+GK+ l r++++al  +
  CDO70049.1  78 VqeEKSVFFTGAAGSGKSLLLRAIIAALRRK 108
                 133567********************99655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.8
                 CTTCCCCSTSCEEEEETGGGGCCCS- CS
        TsaE  83 lgleeyleeeavvlvEWpekleellp 108
                 lg++    +++  ++EW++ le+ +p
  CDO70049.1 504 LGFDPKKVKAHPKVIEWSSTLETHTP 529
                 55555532445789****99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3827.91
//
Query:       CDO70050.1  [L=547]
Description: hypothetical protein BN946_scf184601.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   12.8   0.1       0.14   11.9   0.1    1.4  1  DUF2157   Predicted membrane protein (DUF2157)
       0.15   11.5   0.6       0.27   10.7   0.6    1.4  1  NeA_P2    Nepovirus subgroup A polyprotein


Domain annotation for each model (and alignments):
>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.6e-05      0.14      20      56 ..     510     545 ..     496     547 .] 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
     DUF2157  20 ryeaeeresarrrsfleallvlGalllglGlilfvAa 56 
                 ++++e+r+s  +  f+ +l+++Ga++ g+G+ lf Aa
  CDO70050.1 510 QARKEGRRS-VGFTFRIGLALMGAFCAGVGIGLFAAA 545
                 222223223.35556*******************998 PP

>> NeA_P2  Nepovirus subgroup A polyprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6     3e-05      0.27      99     153 ..     286     347 ..     244     354 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3e-05
      NeA_P2  99 vpqpkvvipspppvpkpyfr.....avGafaptrsGfiratverltre..reesraaalfae 153
                 +  p vv+psp p+p++ +      +   f p  sGf  a +e l++   r   + a+l ae
  CDO70050.1 286 PHIPVVVLPSPSPAPTATYGhssdlSYRIFPPDASGFRPASLEALRKGlfRSPNTLATLRAE 347
                 45677***********66642222245689**************998533555566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3624.43
//
Query:       CDO70051.1  [L=301]
Description: hypothetical protein BN946_scf184601.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-12   45.3   0.3    1.3e-11   44.5   0.3    1.5  1  zf-NOSIP        Zinc-finger of nitric oxide synthase-interact
    0.00047   20.0   5.0     0.0015   18.3   2.1    2.2  2  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
    0.00079   19.4   0.7    0.00079   19.4   0.7    2.2  2  zf-RING_UBOX    RING-type zinc-finger
      0.002   18.0   0.3      0.006   16.5   0.2    2.0  2  zf-TFIIIC       Putative zinc-finger of transcription factor 
     0.0074   16.1   2.6     0.0074   16.1   2.6    2.1  2  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.029   14.2   2.0      0.029   14.2   2.0    2.1  2  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
      0.062   13.6   1.4      0.062   13.6   1.4    2.2  2  zf-RING_2       Ring finger domain
      0.086   13.1   0.5       0.15   12.3   0.5    1.4  1  Bindin          Bindin
      0.091   12.8   2.3        7.7    6.6   1.3    2.4  2  zinc-ribbons_6  zinc-ribbons
       0.59   10.3   5.1       0.16   12.1   1.1    2.0  2  zf-C3HC4_4      zinc finger of C3HC4-type, RING
       0.93    9.4   8.7        1.1    9.2   3.1    2.3  2  Prok-RING_4     Prokaryotic RING finger family 4
        7.4    6.6   7.2         21    5.2   3.7    2.6  2  zf-RING_5       zinc-RING finger domain


Domain annotation for each model (and alignments):
>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3   8.7e-15   1.3e-11       1      72 [.       4      71 ..       4      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 8.7e-15
    zf-NOSIP  1 hgknctagavytyhekkkdtaasgygtqsvrlikdavkdfdccslslqacrdpvltedgylyekeaileyil 72
                h kn ta ++++y e kk      ygt+  rl++++++ fd c+l lq  rdpv  + g+l+ +e  l  ++
  CDO70051.1  4 HSKNNTASSIFSYAEYKKL----DYGTKRQRLGNESMRRFDACALCLQRARDPVACQKGHLFCRECALTDLV 71
                89*************9994....6*****************************************9987665 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.1     1e-06    0.0015       4      30 ..      41      66 ..      39      73 .. 0.94
   2 ?    1.9   0.1      0.13     2e+02      39      47 ..     265     273 ..     258     284 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
                B-TTTSSSBS-EEETTEEEEEE-HHHH CS
  zf-C3HC4_3  4 eCviClerprnvvllpCgHlvlCeeCa 30
                 C +Cl+r r+ v ++ gHl +C eCa
  CDO70051.1 41 ACALCLQRARDPVACQKGHL-FCRECA 66
                6*******************.*****9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
                 B-TTT--B- CS
  zf-C3HC4_3  39 kCpiCrrpi 47 
                  Cp C+++ 
  CDO70051.1 265 ICPSCKKQL 273
                 355555543 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.7   5.3e-07   0.00079       1      26 [.      42      72 ..      42      85 .. 0.73
   2 ?   -0.2   0.1      0.71   1.1e+03       1      10 [.     266     275 ..     266     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.3e-07
  zf-RING_UBOX  1 CpIClelftdPlvlpCG..HtFCreCl.....w 26
                  C  Cl+   dP v  C+  H FCreC      +
    CDO70051.1 42 CALCLQRARDP-V-ACQkgHLFCRECAltdlvT 72
                  99*********.7.59777*******9654431 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.71
  zf-RING_UBOX   1 CpIClelftd 10 
                   Cp C+ ++++
    CDO70051.1 266 CPSCKKQLSN 275
                   *****98875 PP

>> zf-TFIIIC  Putative zinc-finger of transcription factor IIIC complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2     4e-06     0.006      27      84 ..      51     107 ..      24     167 .. 0.78
   2 ?   -1.8   0.0         2     3e+03      56      68 ..     266     278 ..     254     291 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4e-06
   zf-TFIIIC  27 teaqckeGHvfsR.CaltflaiqepkiskvCilcstevldeelveaqelikeeseksll 84 
                    +c++GH+f R Calt l  q  +i+++   ++ e++++e  e+++  +e+ ++++l
  CDO70051.1  51 DPVACQKGHLFCReCALTDLVTQINDIKRQK--VRLEAMKKEAEEERQRVREAARERVL 107
                 3478********99**************765..55589988887777744444555554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
   zf-TFIIIC  56 Cilcstevldeel 68 
                 C  c++++ +++l
  CDO70051.1 266 CPSCKKQLSNNTL 278
                 5556433333332 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.6   4.9e-06    0.0074       2      31 ..      42      70 ..      41      74 .. 0.87
   2 ?   -0.3   0.1      0.64   9.6e+02       2       6 ..     266     270 ..     261     280 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.9e-06
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCgHvfCqkCilrsL 31
                C++Cl++  dp v  + gH fC++C l+ L
  CDO70051.1 42 CALCLQRARDP-VACQKGHLFCRECALTDL 70
                ***********.667779*******99865 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.64
  zf-C3HC4_2   2 CpiCl 6  
                 Cp C 
  CDO70051.1 266 CPSCK 270
                 55555 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.0     2e-05     0.029       1      27 [.      42      67 ..      42      77 .. 0.92
   2 ?   -0.3   0.1      0.66   9.8e+02      38      41 .]     266     269 ..     258     280 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                -TTT-S--SS-E.E-TTS--B-CHHHH CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCir 27
                C++Cl+ a +p+ + + +H fC++C +
  CDO70051.1 42 CALCLQRARDPV-ACQKGHLFCRECAL 67
                ************.88889*******75 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.66
                 -TTT CS
    zf-C3HC4  38 CPlC 41 
                 CP C
  CDO70051.1 266 CPSC 269
                 4444 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.4   4.1e-05     0.062       2      31 ..      41      67 ..      40      76 .. 0.69
   2 ?    0.3   0.3      0.59   8.8e+02      39      44 .]     264     270 ..     255     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreCle 31
                 C++Cl++  ++  +++   gH f+reC+ 
  CDO70051.1 41 ACALCLQRARDPVACQK---GHLFCRECAL 67
                7****966654444332...69******74 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.59
   zf-RING_2  39 t.CPlCr 44 
                   CP C+
  CDO70051.1 264 PiCPSCK 270
                 1599996 PP

>> Bindin  Bindin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5    0.0001      0.15     153     197 ..      79     125 ..      68     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
      Bindin 153 Reqv.LsAmqEeEeEEeqDAangvrdnvlnnln.napgqggfggaeg 197
                 R++v L Am+ e eEE q    ++r+ vl + + +  g ++ ++  +
  CDO70051.1  79 RQKVrLEAMKKEAEEERQRVREAARERVLREFEkRQLGLAATSTIST 125
                 3444499***********************99964445444444333 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.3    0.0052       7.7      25      55 ..      35      65 ..      28      71 .. 0.89
   2 ?    4.6   0.0     0.021        31      29      40 ..     263     274 ..     254     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0052
                    EEEEEEE-SSS-S---EEEETTEEEE--TTT CS
  zinc-ribbons_6 25 dlkkealCpeCeqelevlkaCgavdyfCnkc 55
                    ++++   C  C q+     aC +   fC++c
      CDO70051.1 35 SMRRFDACALCLQRARDPVACQKGHLFCREC 65
                    5677789**********************99 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.021
                     EEE-SSS-S--- CS
  zinc-ribbons_6  29 ealCpeCeqele 40 
                      ++Cp C+++l+
      CDO70051.1 263 PPICPSCKKQLS 274
                     567888888876 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   0.00011      0.16       1      25 [.      42      66 ..      42      74 .. 0.93
   2 ?   -1.3   0.2       1.7   2.6e+03       1       8 [.     266     273 ..     264     277 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCi 25
                C  Cl+   +Pv  + Gh fC +C 
  CDO70051.1 42 CALCLQRARDPVACQKGHLFCRECA 66
                999*********************5 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.7
  zf-C3HC4_4   1 CPiCldYL 8  
                 CP C + L
  CDO70051.1 266 CPSCKKQL 273
                 66666554 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.1   0.00072       1.1       1      24 [.      42      65 ..      42      69 .. 0.95
   2 ?    3.1   0.3     0.057        86      32      43 ..     265     276 ..     258     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00072
  Prok-RING_4  1 CvlCgeqekkailepCgHlvCkeC 24
                 C lC ++ ++++    gHl+C+eC
   CDO70051.1 42 CALCLQRARDPVACQKGHLFCREC 65
                 99**********9999******** PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.057
  Prok-RING_4  32 sCPlCqrrisks 43 
                   CP C++++s++
   CDO70051.1 265 ICPSCKKQLSNN 276
                  6******99876 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.7     0.014        21      13      33 ..      50      70 ..      41      82 .. 0.69
   2 ?    1.8   0.1      0.16   2.3e+02       2       8 ..     266     272 ..     253     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
   zf-RING_5 13 ekfyltsCgHifCekClkkll 33
                ++++  + gH fC +C+ + l
  CDO70051.1 50 RDPVACQKGHLFCRECALTDL 70
                555555559*******98765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.16
   zf-RING_5   2 CnkCfek 8  
                 C++C ++
  CDO70051.1 266 CPSCKKQ 272
                 5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1489  (0.0830498); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1994.58
//
Query:       CDO70052.1  [L=185]
Description: hypothetical protein BN946_scf184601.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-07   29.2   0.0    1.1e-06   28.4   0.0    1.4  1  DUF302    Domain of unknown function DUF302


Domain annotation for each model (and alignments):
>> DUF302  Domain of unknown function DUF302
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.3e-11   1.1e-06      15      63 .]      96     146 ..      83     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 6.3e-11
                 -S-EEEEEEE-HHHHHHHHCC-GGGGGG-SEEEEEEEET..TEEEEEEE-H CS
      DUF302  15 lrpykilgaCnPklatealqadpeiglllPcrvvVyekd..gkttvsyvdP 63 
                  ++++++ ++nP +a ++l++d ++gl +P ++++ e++  + t++ y dP
  CDO70052.1  96 TPRTVVYTFGNPLIAQTMLRHDLSAGLHIPPKLMLLEDAtgNGTKILYDDP 146
                 4789*********************************55569*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1305.64
//
Query:       CDO70053.1  [L=207]
Description: hypothetical protein BN946_scf184601.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1424.01
//
Query:       CDO70054.1  [L=1069]
Description: hypothetical protein BN946_scf184601.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-22   78.3   0.0    7.1e-22   77.1   0.0    1.7  1  Spt5-NGN        Early transcription elongation factor of RNA 
    2.7e-19   68.4  35.2    1.2e-07   31.4   0.2    8.6  9  KOW             KOW motif
    2.3e-17   63.8  15.1    2.3e-17   63.8  15.1    3.3  2  Spt5_N          Spt5 transcription elongation factor, acidic 
    2.6e-05   24.7  33.1    0.00062   20.3  32.9    2.7  1  CTD             Spt5 C-terminal nonapeptide repeat binding Sp


Domain annotation for each model (and alignments):
>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.6e-25   7.1e-22       1      84 []     184     269 ..     184     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.6e-25
    Spt5-NGN   1 siwavkctagqErevalslmkkilelakken.leIkSvfapdelkGyiyvEAdrkaaveralegipnvrgvv.qglvpikEvedll 84 
                 ++w v++++g+Er++++slm+k+ +l+ +++ l+I S+f++d+l G+iyvEA++ ++v++a++g+  v+++  ++lvpi+E+ +ll
  CDO70054.1 184 NLWQVRVKPGKERDIVFSLMRKAIDLEFSTRpLQILSAFQRDSLPGMIYVEARSAKQVSEAINGLVGVFPSRgINLVPIEEMASLL 269
                 69***********************98887789***************************************99********9987 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.5e-06     0.033       1      26 [.     280     305 ..     280     308 .. 0.90
   2 ?   -1.0   0.3      0.45     2e+03      19      32 .]     355     373 ..     354     373 .. 0.85
   3 !    5.6   2.1    0.0036        16       1      31 [.     439     467 ..     439     468 .. 0.92
   4 !   31.4   0.2   2.6e-11   1.2e-07       1      29 [.     492     520 ..     492     532 .. 0.91
   5 ?    1.6   0.0     0.066     3e+02      13      26 ..     624     637 ..     624     654 .. 0.84
   6 !   12.3   0.2   2.8e-05      0.13       5      24 ..     710     729 ..     707     736 .. 0.86
   7 ?   -3.0   0.6       1.9   8.5e+03      15      22 ..     934     941 ..     931     941 .. 0.83
   8 !    9.7   0.1   0.00019      0.84       9      26 ..     951     968 ..     950     981 .. 0.82
   9 !   13.3   0.0   1.3e-05     0.059       2      23 ..    1007    1028 ..    1006    1035 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.5e-06
                 TTSEEEESSSTTTTCEEEEEEEETTT CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhk 26 
                 pG +V++ +G++ G+ ++V +v ++ 
  CDO70054.1 280 PGTWVRIKRGKYQGDLAQVMDVTENG 305
                 899*******************8876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.45
                 EEEEETTT.....TEEEEE CS
         KOW  19 Vvkvdqhk.....vrVfvd 32 
                 Vvkv+  k     + V+v+
  CDO70054.1 355 VVKVYGRKsvskrNQVYVF 373
                 9*****9999999888885 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0036
                 TTSEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 pGdhV+V  G   G  G+V +++ ++  V++
  CDO70054.1 439 PGDHVEVFEGEQTGVHGTVHSIEGDV--VTI 467
                 8*************************..555 PP

  == domain 4  score: 31.4 bits;  conditional E-value: 2.6e-11
                 TTSEEEESSSTTTTCEEEEEEEETTTTEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhkvrV 29 
                 pGdhVkV++G+++++tG Vv+v++++v+ 
  CDO70054.1 492 PGDHVKVMAGKNADETGLVVSVIDNVVTF 520
                 8*************************764 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.066
                 TTCEEEEEEEETTT CS
         KOW  13 kGktGkVvkvdqhk 26 
                 +G++G+V++  q +
  CDO70054.1 624 EGRKGRVLHTHQSV 637
                 7********99998 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 2.8e-05
                 EEESSSTTTTCEEEEEEEET CS
         KOW   5 VkVvsGphkGktGkVvkvdq 24 
                 V+V+ Gp kG +G++++ + 
  CDO70054.1 710 VMVIKGPSKGYVGTIKDTNG 729
                 9***************9886 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 1.9
                 CEEEEEEE CS
         KOW  15 ktGkVvkv 22 
                 k G+Vv+v
  CDO70054.1 934 KRGVVVEV 941
                 789***98 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00019
                 SSTTTTCEEEEEEEETTT CS
         KOW   9 sGphkGktGkVvkvdqhk 26 
                 +G ++Gk+G+V++v +  
  CDO70054.1 951 GGDFEGKQGVVLSVFDTH 968
                 79************9876 PP

  == domain 9  score: 13.3 bits;  conditional E-value: 1.3e-05
                  TSEEEESSSTTTTCEEEEEEEE CS
         KOW    2 GdhVkVvsGphkGktGkVvkvd 23  
                  G+ V V+ G +kG+++++++v+
  CDO70054.1 1007 GEKVLVLNGSNKGQEARIEQVE 1028
                  899*****************97 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.6  38.4         4   1.8e+04      10      49 ..      37      78 ..       2      84 .. 0.56
   2 !   63.8  15.1   5.2e-21   2.3e-17       1      99 []      85     178 ..      85     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: -13.6 bits;  conditional E-value: 4
                XXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXX CS
      Spt5_N 10 dde.eeeeeeeeveggeddfiaeeeaeeeeed.serddrshr 49
                d+e eeee+eee +++e+++ +ee+++e +e+ ++r +++h+
  CDO70054.1 37 DEEeEEEEQEEEEDEEEEEDDEEEDEDEGMERgKKRAKHRHK 78
                333133222222222222211222222222222344444443 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 5.2e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X-GGGG- CS
      Spt5_N   1 FiddeAeVdddeeeeeeeeeveggeddfiaeee.aeeeeedserddrshreldrrrqaeededaeeiaealeeRYgrsskkayrgeaeessevpqqlLL 98 
                 F+d+eAeVd+de  eeee+e+e ++d+fia+   + e++ d+ r++++h + drr ++  d+d+e++ae++ +RY+r ++ +y+g++ +   vpq+lL+
  CDO70054.1  85 FLDVEAEVDEDE--EEEEDEDEYARDEFIADTGvEGEDDYDMVRRAADHARYDRRVRELDDRDLEQVAEDISQRYRR-TAVRYTGDMSD---VPQRLLM 177
                 9**********8..56666666788999999651455666699*************99999**************99.********999...******* PP

                 - CS
      Spt5_N  99 P 99 
                 P
  CDO70054.1 178 P 178
                 9 PP

>> CTD  Spt5 C-terminal nonapeptide repeat binding Spt4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  32.9   1.4e-07   0.00062       1      68 [.     778     839 ..     778     921 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
         CTD   1 gsrTPawnsaggsrTPawgadgsrTpayggagsrtPawnagskTPahgaagsrTPayktawdgsrTpa 68 
                 g+ TP   + +g++TPawg+ g + ++y+  ++rtPaw+a+s+TP+ +a+  +TPa+ +a+  +rTp 
  CDO70054.1 778 GGSTPNPYN-QGGKTPAWGQTGRTPNPYN--DTRTPAWTASSRTPNPYADHGKTPAW-DAT--ARTPN 839
                 577999888.8********9888878888..7*************************.554..56774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1674  (0.0933683); expected 358.6 (0.02)
Passed bias filter:                      915  (0.0510346); expected 358.6 (0.02)
Passed Vit filter:                       256  (0.0142785); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.51u 0.36s 00:00:01.87 Elapsed: 00:00:00.55
# Mc/sec: 5844.13
//
Query:       CDO70055.1  [L=587]
Description: hypothetical protein BN946_scf184601.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-89  297.3   0.0    1.3e-88  296.9   0.0    1.1  1  UvdE      UV-endonuclease UvdE


Domain annotation for each model (and alignments):
>> UvdE  UV-endonuclease UvdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.9   0.0   7.2e-93   1.3e-88       1     274 [.     121     390 ..     121     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 296.9 bits;  conditional E-value: 7.2e-93
        UvdE   1 lGyvclavelrnasp.avtlsrtrrlklikrer..keklkelakaNlkdllkllkynaaygirllRlSSslvPlashpevgykletalaeeleevGela 96 
                 lGy+cl++ lr ++p +v++srt r+ +i +     +  kel++ N++dl++l+++n++ +ir+lR+SS+++P+ash ++gy+le  +++el+++G la
  CDO70055.1 121 LGYACLNTVLRAMKPePVFCSRTLRIDTILKPEfgMDYCKELGRRNVEDLVRLIQWNEENNIRFLRVSSEMFPFASHEKYGYTLE-YAEKELKAAGDLA 218
                 8************98469*****999988766545999**********************************************9.99*********** PP

        UvdE  97 kelglRltfHPeqftllnSdrkevtesairdlayHdklldalklaeqqdavliiHvGGkfgdkeaalerfkenik.rlpdsvkerlvLENDdksytvad 194
                 k +g+Rlt+HP+qft+l+S+r+ v++sairdl yH +++  ++l++   +v+iiH+GG f+dk+a++erfk+ ++ rl d++++rlvLEND+  y  +d
  CDO70055.1 219 KRYGHRLTTHPGQFTQLGSPRDVVVDSAIRDLDYHCQMFRYMGLNQD--SVMIIHMGGVFNDKQATIERFKQVYRtRLTDEMRARLVLENDEICYNADD 315
                 ********************************************988..***********************99648********************** PP

        UvdE 195 lLpvceelniPlVlDyHHhnvldlreesldeslp.lveriveTWerkgikqkvHlSepldgkavrahkdrkhadrvldlle 274
                 lLpvceel+iPlV+DyHH  +        ++  p l+eri + W+rkgik+k+HlS+p+ g a + +++rkhadr  +l++
  CDO70055.1 316 LLPVCEELGIPLVFDYHHNWIY-----PSEIPIPeLIERINKIWHRKGIKPKQHLSSPCPG-AETVMEKRKHADRCPELPS 390
                 *********************9.....33344444999***********************.9999*********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4096.54
//
Query:       CDO70056.1  [L=92]
Description: hypothetical protein BN946_scf184601.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-29  100.1   0.2    5.8e-29   99.9   0.2    1.1  1  DUF543    Domain of unknown function (DUF543)
  ------ inclusion threshold ------
       0.25   10.0   0.0       0.25   10.0   0.0    1.0  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.2   6.4e-33   5.8e-29      10      74 .]       5      71 ..       1      71 [. 0.92

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 6.4e-33
      DUF543 10 sapse..sdldekwDaclsnllvkvglgllvGvvasvllfrrRaapvalGaGvGiGaAYtecsalFn 74
                s+ps+  +++ +k D+cl++l+vk+g+g+ +Gv+asv+lfrrRa+pvalG+G+G+G+AY++c+++Fn
  CDO70056.1  5 SKPSSseNIVAQKFDRCLADLIVKSGVGFSAGVIASVILFRRRAWPVALGTGFGAGMAYADCDRSFN 71
                45555569**********************************************************7 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.7e-05      0.25     166     212 ..       6      53 ..       1      77 [. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.7e-05
    Ndc1_Nup 166 ivqpskyl.lkrlpsilkkslilslvlllvspiiyylllrsfiwslal 212
                 +++ s+ +  +++ + l++ +++s v + +++i++ +l+r+++w +al
  CDO70056.1   6 KPSSSENIvAQKFDRCLADLIVKSGVGFSAGVIASVILFRRRAWPVAL 53 
                 445566663666********************************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 654.54
//
Query:       CDO70057.1  [L=769]
Description: hypothetical protein BN946_scf184601.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   22.2   0.1    0.00027   21.3   0.1    1.5  1  HET       Heterokaryon incompatibility protein (HET)
  ------ inclusion threshold ------
       0.21   11.2   0.3        0.4   10.3   0.3    1.3  1  UL45      UL45 protein, carbohydrate-binding C-type lectin-li


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   3.1e-08   0.00027       1      88 [.      22     128 ..      22     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.1e-08
         HET   1 YeaLSYvWgdsk....................ekeeievng......klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsn 73 
                 Y+a+SY  +ds+                    +              +l +   ++++ +q + + g++ +Wi + CIn  + +e s +++ +   Ys+
  CDO70057.1  22 YVAISYIREDSDsdnasrdvaqegffsqnsifN-------PtnvrtpSLKHTSPTVRRICQFVLDFGYSHVWIQEQCINTANRTELSADLNAVWGWYSR 113
                 99******9998887777777666664444433.......1445444667777889999999999********************************** PP

         HET  74 Aelvivalgseseds 88 
                 Ae+++v l++ s+  
  CDO70057.1 114 AEICYVFLADVSPGD 128
                 ********9988633 PP

>> UL45  UL45 protein, carbohydrate-binding C-type lectin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   4.5e-05       0.4      30      77 ..     684     728 ..     659     732 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.5e-05
        UL45  30 svlsstsssrtkrkspaaalllilggialGvlltvfvivatlvfavpl 77 
                  ++sst +++++ +s a    l+lg+i l +++ v+++v ++v +vp+
  CDO70057.1 684 VSSSSTIAHQHEFRSSA---KLTLGFIGLAIVVVVVIVVVVVVVVVPR 728
                 33344444444444444...56************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4892.78
//
Query:       CDO70058.1  [L=583]
Description: hypothetical protein BN946_scf184601.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4043.05
//
Query:       CDO70059.1  [L=605]
Description: hypothetical protein BN946_scf184601.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4096.57
//
Query:       CDO70060.1  [L=250]
Description: hypothetical protein BN946_scf184601.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1824.92
//
Query:       CDO70061.1  [L=174]
Description: hypothetical protein BN946_scf184601.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1353.54
//
Query:       CDO70062.1  [L=742]
Description: hypothetical protein BN946_scf184601.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-15   56.4   0.0    4.3e-15   55.8   0.0    1.2  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    5.3e-07   29.9   0.0      1e-06   29.0   0.0    1.4  1  RNase_H   RNase H
      0.001   19.7   0.0     0.0022   18.6   0.0    1.5  1  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   7.2e-19   4.3e-15      42     193 ..       2     154 ..       1     212 [. 0.86

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 7.2e-19
                 ---HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-T CS
       RVT_1  42 qpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsv 137
                 q+g r gr t d++   ++ +k +++++    +++lD+k+aF   + e+l++ l   +vp + +++++  l++r+++++++  +s  + ++ g+ qG++
  CDO70062.1   2 QFGGRAGRTTTDSLhlvTKTVKDAWRRGHVASVVFLDIKSAFPAADPERLYYNLRMRGVPGEYVDWLRVKLTGRKTRLHFDDYASDLFDIASGIDQGCP 100
                 8999*************9999999***********************************************************99************** PP

                 THHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHH CS
       RVT_1 138 lSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlke 193
                 lS +l+ ++ ++l+ + +++  g   +  +DD+ +++++k+ ++++ ++v+++l +
  CDO70062.1 101 LSVILYAFYNSDLIDSADTA-DGELAVGSMDDVALVVTGKT-FDSCHDKVRRFLDR 154
                 ******************95.89**************9966.55555555555554 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.7e-10     1e-06       6     142 ..     427     561 ..     423     562 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.7e-10
                 EEEEEEEECTTTCEEEEE.EECTT.....EEEEEEEC..CCCHHHHHHHHHHHHHHHTT.SC....SEEEEEES-HHHHHHHHCCCHHHHHTTSSSETT CS
     RNase_H   6 vYtDGsclgnpgeggaga.vlykeg...arnisaple..eaqtnnraELsAvieaLkalksd....ekvniytDSkYvvkgitqwvhrwkknawkttse 94 
                 +YtDGs+      g a+  +ly  g    r+++ +l    + t   aEL  v   ++  +++     +v i  D k ++++ t    r +  ++  t+ 
  CDO70062.1 427 LYTDGSAC---DDGVAAPpILYPPGrarPRQLYLHLGpdTRHTVYEAELAGVLLGMELIRRErrcdGAVSIALDNKAAIQASTL---RSSAPGRYLTDL 519
                 79999977...6777777777666654433555555447788999999999998888443333444678899999988884332...333444444444 PP

                 SSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  95 qkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 +      +l  ll +   + +++l+wv+gH Gvp gNe+aD +Akeaa
  CDO70062.1 520 F----HDQLNTLL-TSRPQLRLTLRWVPGHYGVP-GNEAADAAAKEAA 561
                 4....44565666.4555899************9.**********997 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.7e-07    0.0022      29      80 ..     631     682 ..     626     685 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.7e-07
      zf-RVT  29 ppkvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80 
                 p ++  ++  l ++++p +   ++ g  +++ C+ C++e Et+ H +l+C+ 
  CDO70062.1 631 PRRHANLFLQLRTGHVPLQTYFARIGKVADAACPTCHEEPETVAHYLLRCST 682
                 66777777778889999999999999999*********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5361.77
//
Query:       CDO70063.1  [L=239]
Description: hypothetical protein BN946_scf184601.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1619.66
//
Query:       CDO70064.1  [L=216]
Description: hypothetical protein BN946_scf184601.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1594.02
//
Query:       CDO70065.1  [L=253]
Description: hypothetical protein BN946_scf184601.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1940.92
//
Query:       CDO70066.1  [L=222]
Description: hypothetical protein BN946_scf184601.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1692.64
//
Query:       CDO70067.1  [L=244]
Description: hypothetical protein BN946_scf184601.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1779.27
//
Query:       CDO70068.1  [L=481]
Description: hypothetical protein BN946_scf184601.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-31  109.9   0.8    4.7e-31  108.6   0.8    1.6  1  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.8   2.6e-35   4.7e-31       3     248 ..      52     362 ..      50     365 .. 0.67

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 2.6e-35
                 EEEEE---EEE---SS-S-----BS--EEEEEEEE.....TTT-SB--GGG...---TTEEEEEEEEETTSSSB--EE--.---------.......-- CS
      Velvet   3 LevvQqPkrARmCgfgdkdrrpidPppvvqLrvtd.....aetnsevdvee...ldssffvvtvdLwsedgtkevnlvkssssasssiss......eas 87 
                 Le +Q+P ++         +rp+dPppvv  r ++        +++v+ve      s   +++ +L+++  +++   v+++ ++++s+++      +++
  CDO70068.1  52 LEEIQKPDHGH--------KRPLDPPPVVLCRFFElvnglG--GTQVEVELdpdYPSMGMICHLELFPVPPQSDPFQVTTPLQEQQSMQQsvgpqaPSE 140
                 66667776666........8***************665431..34444433334455567888888887755555555444444444444333344222 PP

                 -----------...............--------------------------............................................... CS
      Velvet  88 ssssqsseess...............sspksqassaessapsssaapsaqee............................................... 124
                 s+ss+ + +++                s++  +s +++++p+ +++p  +++                                               
  CDO70068.1 141 STSSTLTVDNNvemqrneglqptpipFSETAFSSLQSATTPNYRTTPAVTSSassppppgtspsafyadyapalhegnipsgptasaqmqtdehsavpd 239
                 222222222224455555555555552233333333333333333332222255556677777788888888888888888888888888888888887 PP

                 ....-------------------EESEEE--EEE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE---EEEE CS
      Velvet 125 ....kekkeatlssssnqasskltrnLiGslvasafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfSdpFtVy 219
                     ++   at       +ss++ ++L+G++++  + l d ++k+   Fvf+D +V+ eGtF Lr+r +nv +    + ++   +p lae++  p +Vy
  CDO70068.1 240 genhQQDIVATFGDFLILESSNCSNMLSGTTSVP-AELIDYKGKKSAVFVFSDVAVKAEGTFVLRYRAFNVLS----KCANAPLVPALAECYGGPCKVY 333
                 76434444444444455569**********9766.6777999*******************************....55666899************** PP

                 -TTT--------HHHHHHHHTT----XXX CS
      Velvet 220 sakkFpGvlesTaLskalakqGikipiRk 248
                 s+k+FpG++ sT+L+k+la +G+++++R+
  CDO70068.1 334 SSKEFPGLQASTELTKSLAMHGVRVNVRE 362
                 ***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3130.48
//
Query:       CDO70069.1  [L=329]
Description: hypothetical protein BN946_scf184601.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-29  101.3   0.0    5.5e-29  100.7   0.0    1.3  1  MoCF_biosynth  Probable molybdopterin binding domain
  ------ inclusion threshold ------
      0.025   14.7   0.0       0.09   12.9   0.0    1.9  2  CinA_KH        Damage-inducible protein CinA KH domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   6.1e-33   5.5e-29       6     103 ..      88     185 ..      86     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 6.1e-33
                    -HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHHHHHHHHC CS
  MoCF_biosynth   6 GdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekelegfeeafrrvslkpg 101
                    Gde+l+gk+ D+n+ ++a++++e+gv++++++vvpD+e++i+ea ++ ++  d++it+GG+Gpt+dD+t++ lak+f+++le ++e++rr++   +
     CDO70069.1  88 GDEILNGKTLDRNSNYFARYCFEHGVDLRRIEVVPDEEDDIVEAARRLVKTFDFVITSGGIGPTHDDITYASLAKAFDQPLEYHQETLRRMGEMTR 183
                    9********************************************9998999***************************************99977 PP

                    CT CS
  MoCF_biosynth 102 kp 103
                    + 
     CDO70069.1 184 HR 185
                    63 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.55   4.9e+03      24      41 ..      99     116 ..      93     136 .. 0.78
   2 ?   12.9   0.0     1e-05      0.09       6      67 ..     253     316 ..     249     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.55
                 BSSSEEEEEEETTEEEEE CS
     CinA_KH  24 renptlAiyakegevtvR 41 
                 r+ +  A y+ e++v++R
  CDO70069.1  99 RNSNYFARYCFEHGVDLR 116
                 455578889999999997 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1e-05
                 E-S--HHHHHHHHGGGS-B...SSS.EEEEEEET.TEEEEEEE...EEHHHHHHHHH....HHHHHT CS
     CinA_KH   6 tfGigESavaekladlidr...enp.tlAiyake.gevtvRltakaaneeeaealiapveeeirerl 67 
                 t G+ ES++a  l +l +r   +   +++ y+   ++v v l   ++++++++al+++v+++++ rl
  CDO70069.1 253 TEGLPESSIAPYLTELQARtkgD-GvRVGSYPLLaKGVYVSLI--GRDADKVRALADEVVQKLQGRL 316
                 669*************8887534.36******9867******9..99999*************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2247.13
//
Query:       CDO70070.1  [L=215]
Description: hypothetical protein BN946_scf184601.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-11   44.5   1.1    1.9e-11   44.5   1.1    1.9  2  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   1.1   1.1e-15   1.9e-11       1      79 [.      23     108 ..      23     118 .. 0.80
   2 ?   -0.6   0.1      0.13   2.3e+03      45      63 ..     142     161 ..     111     191 .. 0.62

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.1e-15
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdp.....gtvtlvLcagssnnlksvktiasgik.nsdgsytwtvpaslesgg.aYflqivse 79 
                   tsP ++++++ag++ ti+Wkd+g+ p     g  +++++ gs+++ + v++ia++++ +s+gs+ +t++as +++g +Yf+++ s 
    CDO70070.1  23 TSPVASTTWAAGQQQTISWKDDGSAPslaelGLCKISVYVGSQTQQTLVQAIADNVNvSSTGSVVFTPDASSGENGnYYFIRVESA 108
                   79*********************88855555777777777777777778999****96667********97766662699988754 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.13
  GPI-anchored  45 kti.asgiknsdgsytwtvp 63 
                   ++i asg+ +s  s+t + p
    CDO70070.1 142 AQIgASGAASSPASATSQAP 161
                   33334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1524.94
//
Query:       CDO70071.1  [L=405]
Description: hypothetical protein BN946_scf184601.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-06   26.0   0.0      2e-05   24.1   0.0    1.8  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-09     2e-05     156     264 .]      38     152 ..      23     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-09
                 TTTSCGGGS-HHHH.............TT...SCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHH CS
     Pkinase 156 sfvgtseYlAPEvl.............ke...neyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeak 238
                 ++  t++Y APE+l             ++     y++ vD +slG++l el  g+p  +   + +++++   +           + +  e+ +++ ++ 
  CDO70071.1  38 QVSFTRRYAAPELLgahaprrgvdwyyQDqdlLVYDERVDFYSLGIMLRELALGEPTDALAVKMQDQWERSSD----------GQRAHSEDVQLDLDFE 126
                 6678**********999888777776622344679*******************9988844444444443333..........56778888899***** PP

                 HHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 239 dllkkllkkdpkkRltaeellqhpyl 264
                 ++  +ll  dp +Rl  + +++++++
  CDO70071.1 127 HFTAELLVDDPDQRLHGTTAKDDKFF 152
                 ***************99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2608.08
//
Query:       CDO70072.1  [L=298]
Description: hypothetical protein BN946_scf184601.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-62  208.7  10.8    6.1e-62  208.7  10.8    2.2  2  SYF2         SYF2 splicing factor


Domain annotation for each model (and alignments):
>> SYF2  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   5.5      0.48   8.6e+03      77      93 ..      36      53 ..       3      96 .. 0.36
   2 !  208.7  10.8   3.4e-66   6.1e-62       2     159 .]      98     293 ..      97     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.48
        SYF2 77 skeafyrta.ntlsladh 93
                +ke+f +++ ++l+ +++
  CDO70072.1 36 DKEKFLAEKkKKLEQLRQ 53
                222222222111111111 PP

  == domain 2  score: 208.7 bits;  conditional E-value: 3.4e-66
        SYF2   2 kgedlerkkalewsaeeaekwekkkkkkeknedagfsdyedaayrkYkkqlkelkpdleaYekqkekaleka........................... 73 
                 +ged+er+k++e+++ee+++wekk ++k++++d++f+d++daa+rkYkk+l+++kpdle+Y++qke al++                            
  CDO70072.1  98 RGEDIERQKNWEYTIEENDEWEKKLARKARRADFSFNDDADAARRKYKKDLDHIKPDLESYNRQKEIALGLPpgtltkhgaaasgsstvtnfdpsggas 196
                 79********************************************************************88*************************** PP

        SYF2  74 ..........savsk.eafyrtantlsladhkpseeavdrlveklekqeekrkkfsrrrkedeegdvtYINerNkkFNkklerfYdkytaeIrenLE 159
                           +++ + e++yr+antl +ad+kpseea+dr++ek++k+ +k+kkfsr+r +++egdvtYINerN++FNkk++r+YdkytaeIr+++E
  CDO70072.1 197 ssmqvvpsslQQQLAaESLYRDANTLLYADNKPSEEAIDRVIEKINKDVDKKKKFSRKRHNEDEGDVTYINERNRVFNKKIARYYDKYTAEIRASFE 293
                 **********555566********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2524  (0.140778); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2112.21
//
Query:       CDO70073.1  [L=680]
Description: hypothetical protein BN946_scf184601.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-20   74.6   3.2    1.3e-20   74.6   3.2    3.7  2  SAE2            DNA repair protein endonuclease SAE2/CtIP C-t
  ------ inclusion threshold ------
        2.3    8.4   7.9        3.2    7.9   3.2    2.9  2  HR1             Hr1 repeat
        3.3    6.0  18.9        1.1    7.6   5.3    2.2  2  BicD            Microtubule-associated protein Bicaudal-D
        4.7    5.6   8.2        7.8    4.9   8.2    1.3  1  FUSC            Fusaric acid resistance protein family
        6.5    6.8  10.3         16    5.6   0.5    3.9  4  DUF2680         Protein of unknown function (DUF2680)
        8.2    7.4  20.5         14    6.6   3.0    4.2  3  PRKG1_interact  cGMP-dependent protein kinase interacting dom


Domain annotation for each model (and alignments):
>> SAE2  DNA repair protein endonuclease SAE2/CtIP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0  10.0         6   1.8e+04      64      89 ..     160     185 ..      58     232 .. 0.65
   2 !   74.6   3.2   4.3e-24   1.3e-20       1     111 []     554     653 ..     554     653 .. 0.78

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 6
        SAE2  64 lakmsseerqeleieakkkklankfg 89 
                  a+++  ++q++ ++++k++ ++k+ 
  CDO70073.1 160 RAELKLLQKQYADLQKTKEESEKKHA 185
                 22222223333333333333333222 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 4.3e-24
        SAE2   1 aFdevvrgkderkclpgCtkpeCcgkkfravaelearkeep...taskeeedkklleeklgdeayklakmsseerqeleieakkkklankfgrHRhafe 96 
                 +F+evvr+k++rk++++ ++ eCc+++++a+++l+a++++p   + +++ ++++ ++++             e+++++ ++a+ ++  ++++rHR+++ 
  CDO70073.1 554 QFEEVVRDKQRRKHMHAVDC-ECCRDYYEAIGPLPAPAKGPvwrSPRSTPSKRRRVDSF-------------EDDDDEVAAAAIEEHKQAISRHREHWP 638
                 6****************888.889***************99765444444444444444.............23444444456666667********** PP

        SAE2  97 raksPpgFWeidFPt 111
                 rak+Pp +W+i+FPt
  CDO70073.1 639 RAKTPPRYWNIEFPT 653
                 **************7 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.13   3.9e+02      35      66 ..      94     125 ..      86     128 .. 0.79
   2 ?    7.9   3.2    0.0011       3.2      20      67 ..     135     179 ..     125     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.13
         HR1  35 kvrqeaeselsesnskielLreqLeelqasvq 66 
                 ++++e    ++ s+s ++ L+++L e++a ++
  CDO70073.1  94 DLQSELIGHINLSKSTLAALEDALHEMNALRE 125
                 56666677788899*************99765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
         HR1  20 enllralesk.ktqnkkvrqeaeselsesnskielLreqLeelqasvqn 67 
                 e+l +    + ++ + ++ +ea +e ++ + +++lL++q ++lq+ +++
  CDO70073.1 135 EKLSQ----EhAKEDTDHASEAPTEAEYLRAELKLLQKQYADLQKTKEE 179
                 55555....66899999***************************98776 PP

>> BicD  Microtubule-associated protein Bicaudal-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.3   0.00037       1.1      99     186 ..      54     140 ..      20     148 .. 0.90
   2 ?    3.9   5.8    0.0048        14     361     433 ..     150     228 ..     145     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00037
        BicD  99 yseLeeenisLqkqvsvLkenqvefeglkheirrleeetellnsqleeairLkeiaekqleeaLealkeeReqknsLrkelsaylnle 186
                 y +Le+  ++L  q     ++q e    +h  + l+  ++ l+s l   i L + +   le+aL  ++  Re  + Lr+e+++ l+ e
  CDO70073.1  54 YQNLEDAELALATQPRDGEQSQLEAQLSQHPPEELATHVQDLQSELIGHINLSKSTLAALEDALHEMNALREENAGLRREVEK-LSQE 140
                 788999999999999999***************************************************************98.6655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0048
        BicD 361 kvaveelaelkeelktlkakyekleerykeekarlraeiqelke.kl.......rslekaskqdkekiaelekelkklrkv 433
                  +a +e+  l++elk l+++y +l++  +e ++++ ++ ++ k+ k+       ++l++     + k++ le++++ ++ v
  CDO70073.1 150 SEAPTEAEYLRAELKLLQKQYADLQKTKEESEKKHAEDYTRWKNfKIwltteqkNELKR--AAKRRKLTPLEEDMRRTTVV 228
                 67888999999999999999998888776666666666666655333111000022222..33456778889999888766 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.2    0.0026       7.8     251     343 ..      82     191 ..      34     200 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0026
        FUSC 251 aavpe.laallaelaal................eaaaaaealeaalaalrarlralrrale.adadtaalllarlaellaelaqllaslraleaaiaaa 331
                 +++pe la+ +++l++                 +a + ++al+++ a lr+++++l+++++ +d+d a ++  ++  l ael  l++++++l++  ++ 
  CDO70073.1  82 QHPPEeLATHVQDLQSElighinlskstlaaleDALHEMNALREENAGLRREVEKLSQEHAkEDTDHASEAPTEAEYLRAELKLLQKQYADLQKTKEE- 179
                 33333366666666666677777777665555556666777777777777777777777778888888888888888888888888888888888777. PP

        FUSC 332 rraerlarhrdh 343
                  +++++++++ +
  CDO70073.1 180 SEKKHAEDYTRW 191
                 666666666655 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.9   1.2e+04       7      23 ..     118     134 ..     117     134 .. 0.84
   2 ?    2.7   0.5     0.044   1.3e+02       7      21 ..     161     175 ..     160     176 .. 0.92
   3 ?    2.7   0.1     0.044   1.3e+02       1      11 [.     198     208 ..     198     212 .. 0.89
   4 ?    5.6   0.5    0.0054        16       2      25 ..     653     676 ..     653     679 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.9
     DUF2680   7 keleaLyqqiaelrKqi 23 
                  e++aL+++ a lr+++
  CDO70073.1 118 HEMNALREENAGLRREV 134
                 59999*99999999875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.044
     DUF2680   7 keleaLyqqiaelrK 21 
                 +el+ L++q a+l+K
  CDO70073.1 161 AELKLLQKQYADLQK 175
                 699***********9 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.044
     DUF2680   1 LTdeQkkelea 11 
                 LT+eQk+el+ 
  CDO70073.1 198 LTTEQKNELKR 208
                 8********85 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0054
     DUF2680   2 TdeQkkeleaLyqqiaelrKqivd 25 
                 T++Q++e++a  + ++e ++q++ 
  CDO70073.1 653 TTQQVEEMNAEAARMHEEKRQMIA 676
                 99********************96 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.0    0.0048        14      36     101 ..      73     138 ..      20     141 .. 0.47
   2 ?    4.8   5.4     0.018        53       9      76 ..     152     225 ..     149     230 .. 0.65
   3 ?    2.5   0.1     0.089   2.7e+02      73      94 ..     654     675 ..     602     677 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0048
  PRKG1_interact  36 klkqqrqesvskrssllelekrerrslerkiseleeel........keleeLr...aenqrLkdEngALiRViskLs 101
                     +           ++  ++l+++  ++l  ++++l++el         +l++L    +e + L++En  L R + kLs
      CDO70073.1  73 Q-----------SQLEAQLSQHPPEELATHVQDLQSELighinlskSTLAALEdalHEMNALREENAGLRREVEKLS 138
                     1...........11122223333333333333333333333333332233332333677777777777777777777 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.018
  PRKG1_interact   9 ekeenerLkreLeelekelselkseleklkqqrqe...svskrssllel...ekrerrslerkiseleeelkel 76 
                     + +e e L++eL+ l+k+ ++l+++ e++++++ e   + ++ +  l +   ++ +r ++ rk++ lee+++ +
      CDO70073.1 152 APTEAEYLRAELKLLQKQYADLQKTKEESEKKHAEdytRWKNFKIWLTTeqkNELKRAAKRRKLTPLEEDMRRT 225
                     56899*************99999988888777554444333333333331013334556666777888888765 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.089
  PRKG1_interact  73 lkeleeLraenqrLkdEngALi 94 
                      +++ee+ ae +r+++E + +i
      CDO70073.1 654 TQQVEEMNAEAARMHEEKRQMI 675
                     4788999999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1883  (0.105025); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 4368.77
//
Query:       CDO70074.1  [L=257]
Description: hypothetical protein BN946_scf184601.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1855.56
//
Query:       CDO70075.1  [L=105]
Description: hypothetical protein BN946_scf184806.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 858.93
//
Query:       CDO70076.1  [L=360]
Description: hypothetical protein BN946_scf184806.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0039   17.7   2.8     0.0039   17.7   2.8    1.6  2  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.082   13.2   0.0      0.082   13.2   0.0    2.4  2  DUF1840       Domain of unknown function (DUF1840)
        1.1    9.6  10.6        1.8    8.9   9.2    1.9  2  DUF641        Plant protein of unknown function (DUF641)
        1.2    8.4  10.2        2.7    7.3  10.2    1.7  1  DUF4407       Domain of unknown function (DUF4407)
        1.5    7.3   5.6        2.2    6.8   5.6    1.2  1  FapA          Flagellar Assembly Protein A
        1.7    8.8   6.7        8.1    6.6   3.5    2.7  2  Mst1_SARAH    C terminal SARAH domain of Mst1
        1.9    9.0   8.2       0.46   11.0   4.5    1.9  2  HSCB_C        HSCB C-terminal oligomerisation domain
        2.3    7.9   4.9        1.6    8.4   0.0    2.5  3  IFT46_B_C     Intraflagellar transport complex B protein 46 C
        2.8    7.6  12.8        0.6    9.8   7.0    2.4  3  GrpE          GrpE
          3    7.8   8.2       0.36   10.7   3.9    1.6  2  Prefoldin     Prefoldin subunit
        3.8    7.9   8.4        3.3    8.1   4.3    2.2  2  PRP1_N        PRP1 splicing factor, N-terminal
        5.4    7.2   8.6         15    5.8   8.6    1.6  1  Fib_alpha     Fibrinogen alpha/beta chain family
        7.3    7.0   9.6        1.7    9.1   5.7    1.9  2  CCDC-167      Coiled-coil domain-containing protein 167
        7.9    6.7  17.9      0.048   13.8   3.5    2.8  3  GCN5L1        GCN5-like protein 1 (GCN5L1)


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.8   3.1e-06    0.0039      54     195 ..      43     187 ..      28     191 .. 0.69
   2 ?   -1.8   0.2       2.9   3.8e+03     153     163 ..     288     298 ..     275     315 .. 0.45

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.1e-06
      AAA_23  54 s.....grgfeksdveiesegkvkayveltfenkdgrytrsier.erelskkkgkttkkaklelleideleqfisellgskki....il.nlilflgqe 141
                       + ++ ++dv +++ g+ k+ +e +    +       +   ++ s ++  t  k+  ++l+ d+l++++s+ l+ + +    il n+++   + 
  CDO70076.1  43 PileahDADIGEDDVLLFNPGTLKTRAEARRLESKV-----AKVaAKKCSVEEVTTLHKELQDWLNSDKLDDQTSS-LQLSAAllraILvNHVAHSEAT 135
                 366666667777788877778887776665433333.....2221344444556677888889999999*999997.4444444555666888888888 PP

      AAA_23 142 rfeefelkdkkerleelekeleeledekkllekleqekekekeleeleeeleei 195
                 r +++ +++  erlee+++e+e+le+e + l+++    +k +e++ l+ el+ +
  CDO70076.1 136 RIAKNVENNLRERLEEAQNEKEKLEAELRSLRTQYS--QKAQECQSLRAELNRA 187
                 88888999999*******************999843..3456777777777654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
      AAA_23 153 erleelekele 163
                 er ++  k+ e
  CDO70076.1 288 ERQRSDDKQRE 298
                 11111111111 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   4.0       5.4     7e+03      47      67 ..     139     159 ..      76     187 .. 0.65
   2 ?   13.2   0.0   6.4e-05     0.082      62      99 ..     283     320 ..     244     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.4
     DUF1840  47 akLeaaiaaekaeeaeeeeee 67 
                 +++e+ + +  +e+++e+e+ 
  CDO70076.1 139 KNVENNLRERLEEAQNEKEKL 159
                 222222222222222222222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.4e-05
     DUF1840  62 eeeeeeeeeekeeekeeeeeevsLaqRalPLlelLkaa 99 
                 +e+e+e+++++++++e+ e++v+L qR +P ++ L+++
  CDO70076.1 283 DEKEKERQRSDDKQREKDERRVQLIQRWIPSIDALSRS 320
                 223333334447889999**************999887 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.7   2.1e+03     105     118 ..      88     101 ..      61     111 .. 0.56
   2 ?    8.9   9.2    0.0014       1.8      71     120 ..     140     189 ..      82     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
      DUF641 105 dseieeLkekLeea 118
                  +e++ L+++L++ 
  CDO70076.1  88 VEEVTTLHKELQDW 101
                 34666777777665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0014
      DUF641  71 aeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaek 120
                 + e++l+ +++e ++  + +e+ +++l+++ ++k +e ++L+++L++a+ 
  CDO70076.1 140 NVENNLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSLRAELNRAKI 189
                 5678899999************************************9875 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  10.2    0.0021       2.7     114     166 ..     128     180 ..     123     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0021
     DUF4407 114 eeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqke 166
                   +++ea+++ ++++++l+++l+e++++ ++l+ae+++++++++++ +e q+ 
  CDO70076.1 128 HVAHSEATRIAKNVENNLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSL 180
                 56678999999***********************************9998754 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.6    0.0017       2.2     340     417 ..     105     187 ..      66     196 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0017
        FapA 340 keleeeleeleeeleklkkk....ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.ki 417
                 ++l+++  +l+ +   l++     +++ +++++ k++e + +e l++++++kekl+ el++l++++ +  +e +s ++e  + 
  CDO70076.1 105 DKLDDQTSSLQLSAALLRAIlvnhVAHSEATRIAKNVENNLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSLRAELnRA 187
                 44444444443333333333444666677777888899999999999999999999999999999999999999883332243 PP

>> Mst1_SARAH  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.16     2e+02      38      46 ..      41      49 ..      38      50 .. 0.83
   2 ?    6.6   3.5    0.0063       8.1      12      39 ..     145     175 ..     140     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.16
  Mst1_SARAH 38 RqPIlDAie 46
                R+PIl+A +
  CDO70076.1 41 RKPILEAHD 49
                9*****966 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0063
  Mst1_SARAH  12 LqqrlasLD...peMEqEieelrkrYqaKRq 39 
                 L++rl++     +++E+E++ lr +Y +K q
  CDO70076.1 145 LRERLEEAQnekEKLEAELRSLRTQYSQKAQ 175
                 666665554111469**************77 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       6.2     8e+03      27      35 ..      90      98 ..      69     115 .. 0.59
   2 ?   11.0   4.5   0.00036      0.46      12      45 ..     145     180 ..     144     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.2
                HHHHHHHHH CS
      HSCB_C 27 eleelkaev 35
                e+  l++e+
  CDO70076.1 90 EVTTLHKEL 98
                333333332 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00036
                 HHHHHHCGGGSSSH..HHHHHHHHHHHHHHHHHHHH CS
      HSCB_C  12 lrEeleeaeeaadk..eeleelkaeveerieeleae 45 
                 lrE+leea+++++k  +el+ l+ + +++ +e+ + 
  CDO70076.1 145 LRERLEEAQNEKEKleAELRSLRTQYSQKAQECQSL 180
                 8*******8777778889999999999988888654 PP

>> IFT46_B_C  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.86   1.1e+03     101     124 ..      81     104 ..      62     119 .. 0.62
   2 ?   -0.1   0.6      0.49   6.2e+02     113     153 ..     144     184 ..     104     203 .. 0.53
   3 ?    8.4   0.0    0.0013       1.6      94     134 ..     283     323 ..     275     347 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.86
                 XXXXXXXXXXXXXXHHHHHHHHHH CS
   IFT46_B_C 101 kskvvksienaeknpkkidkWied 124
                  +++  s+e+ ++ +k+++ W+++
  CDO70076.1  81 VAAKKCSVEEVTTLHKELQDWLNS 104
                 223333566777888888888876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.49
                 XXHHHHHHHHHHHHHHHHHH-TT----SS----TTGGGS-- CS
   IFT46_B_C 113 knpkkidkWiedieelhkkkppptveyskkmpdieelmqew 153
                 +  +++++  ++ e+l+ + ++  ++ys+k ++ ++l  e+
  CDO70076.1 144 NLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSLRAEL 184
                 23344555555555555555555555555555555555544 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0013
                 XXXXXX.XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHH-T CS
   IFT46_B_C  94 kksaakekskvvksienaeknpkkidkWiedieelhkkkpp 134
                  +++++++++  k+ e+ e++ + i++Wi +i++l ++ p+
  CDO70076.1 283 DEKEKERQRSDDKQREKDERRVQLIQRWIPSIDALSRSPPT 323
                 444455556666777888999***************96654 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.3   1.6e+03      87     111 ..      83     107 ..      66     115 .. 0.63
   2 ?    9.8   7.0   0.00047       0.6       4      53 ..     139     188 ..     132     194 .. 0.90
   3 ?   -0.4   0.0      0.61   7.9e+02      46      78 ..     288     320 ..     280     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
                 -HHHHHHHHHHHHHHHHHHHHHTT- CS
        GrpE  87 eekslleGvemtlkqllkiLekhgv 111
                 + k  +e v   +k+l+++L++ ++
  CDO70076.1  83 AKKCSVEEVTTLHKELQDWLNSDKL 107
                 3444566677777777777776665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00047
                 ...CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHH CS
        GrpE   4 eeeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekek 53 
                 +++e+++++++ee ++e e+le+e+++l  ++ ++++e++ lr  +++ k
  CDO70076.1 139 KNVENNLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSLRAELNRAK 188
                 678999999**********************************9998876 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.61
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        GrpE  46 rkrtekekeeakkfaiekfakdLLpvlDnlera 78 
                 +++  ++k+  k++   ++++  +p +D+l+r 
  CDO70076.1 288 ERQRSDDKQREKDERRVQLIQRWIPSIDALSRS 320
                 334445566666777777899999999999886 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.1     4e+03      13      33 ..      79      99 ..      68     122 .. 0.52
   2 ?   10.7   3.9   0.00028      0.36      81     117 ..     144     180 ..     132     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHHHHHHHHT CS
   Prefoldin 13 aqlkeaieelektletlktlk 33
                a++ +++ ++e++    k+l+
  CDO70076.1 79 AKVAAKKCSVEEVTTLHKELQ 99
                444444333333333333333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  81 llkkkleelekqlekleeeleklkdqittleanlaql 117
                  l ++lee+++  ekle+el+ l++q+ +  ++++ l
  CDO70076.1 144 NLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSL 180
                 5889*****************************9986 PP

>> PRP1_N  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.3    0.0026       3.3      66     129 ..     119     185 ..      63     191 .. 0.61
   2 ?    1.3   0.1      0.31     4e+02      90     104 ..     285     299 ..     253     311 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0026
                 ------.--------------HHHHHHHHHHHHHHTT-------........-HHHHHHHHHHHHHT CS
      PRP1_N  66 glfaka.eydedDeeAdriyeeiderlderrkkrreakekeele..kvreekpkiqeqFadlkrkLa 129
                  l++    +     eA ri ++++++l+er ++ +++kek e+e  + r++ ++ +++ + l+ +L+
  CDO70076.1 119 ALLRAIlVNHVAHSEATRIAKNVENNLRERLEEAQNEKEKLEAElrSLRTQYSQKAQECQSLRAELN 185
                 33333346677889****************9998888887766633666666777777777777776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.31
                 HHHHHHHHHHTT--- CS
      PRP1_N  90 rlderrkkrreakek 104
                 + +er++++ +++ek
  CDO70076.1 285 KEKERQRSDDKQREK 299
                 111111111111111 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.6     0.011        15      39     134 ..      73     179 ..      64     180 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
                 CCCCCCCCCCCHHHHHHHHH...HHHHHHHHHHHHHHHHH.....HHHHHH..HHHHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  39 kleneleeisnstkeaeelv...keikdslrekqkskkdn.....dnvikk..sskeleeeilrlketidaqe.snirvLqnvlesneqkiqkLeqdid 126
                 +le+++++++ ++ ++ee++   ke++d l++++  ++ +       +++   +++   +e +r+ +++ ++  +++++ qn  e++e ++  L+++ +
  CDO70076.1  73 RLESKVAKVAAKKCSVEEVTtlhKELQDWLNSDKLDDQTSslqlsAALLRAilVNHVAHSEATRIAKNVENNLrERLEEAQNEKEKLEAELRSLRTQYS 171
                 566666666666555544431115666666666666555322121111111112333345789999******999************************ PP

                 HHHHHTTS CS
   Fib_alpha 127 qkerkCke 134
                 qk ++C++
  CDO70076.1 172 QKAQECQS 179
                 ******95 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.6   7.2e+03      31      42 ..      85      96 ..      67     114 .. 0.54
   2 ?    9.1   5.7    0.0013       1.7      21      69 ..     139     188 ..     130     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.6
    CCDC-167 31 elseeeReslee 42
                + s ee + l +
  CDO70076.1 85 KCSVEEVTTLHK 96
                333333333333 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0013
    CCDC-167  21 eaverrlrke.elseeeResleeEeaslkeqleenekeLksLrkeNrksm 69 
                 ++ve++lr++ e  ++e+e+le E++sl++q +++ +e +sLr e  +  
  CDO70076.1 139 KNVENNLRERlEEAQNEKEKLEAELRSLRTQYSQKAQECQSLRAELNRAK 188
                 567888876623345569*************************9966554 PP

>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.8     0.077        99      17      63 ..      73     118 ..      63     127 .. 0.61
   2 ?   13.8   3.5   3.7e-05     0.048      23      76 ..     130     183 ..     122     190 .. 0.89
   3 ?   -2.0   0.6         3   3.9e+03       4      20 ..     288     303 ..     283     315 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.077
      GCN5L1  17 ekakkeaiesaaaltealvdklnsgvaeayanqkklekeakalqanv 63 
                   + k a ++a++++ + v++l ++++  + n  kl++++ +lq ++
  CDO70076.1  73 RLESKVAKVAAKKCSVEEVTTLHKELQD-WLNSDKLDDQTSSLQLSA 118
                 2233445556666666667777777655.567777777777777665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.7e-05
      GCN5L1  23 aiesaaaltealvdklnsgvaeayanqkklekeakalqanvakfakqtdqWlal 76 
                 a ++a+++++++ ++l+++++ea ++++kle+e+++l+++ ++ a++ ++  a 
  CDO70076.1 130 AHSEATRIAKNVENNLRERLEEAQNEKEKLEAELRSLRTQYSQKAQECQSLRAE 183
                 677899************************************999998877665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3
      GCN5L1   4 ehqakqaerreeqekak 20 
                 e+q++  ++re+ e ++
  CDO70076.1 288 ERQRSDDKQREKDE-RR 303
                 33333333343333.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1961  (0.109376); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 2383.59
//
Query:       CDO70077.1  [L=264]
Description: hypothetical protein BN946_scf184806.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1868.53
//
Query:       CDO70078.1  [L=394]
Description: hypothetical protein BN946_scf184806.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-19   69.1   0.1    8.3e-19   67.5   0.1    1.9  2  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.094   11.9   4.6       0.15   11.2   4.6    1.2  1  Tho2      Transcription factor/nuclear export subunit protein
       0.14   12.0   0.0       0.37   10.7   0.0    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.1   1.4e-22   8.3e-19       1      63 []       9      71 ..       9      71 .. 0.97
   2 ?   -3.2   0.0       1.7     1e+04      27      50 ..     231     254 ..     228     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.4e-22
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                ++Ye+Lg+s +ase+eI+ aYr+ +lk+HPD+n+++p+a++kF+e+++A e L dp +R + D
  CDO70078.1  9 NPYELLGISIEASEQEIRTAYRQRSLKVHPDRNRGNPDAARKFHELHQAQELLLDPLRRMALD 71
                68********************************************************98766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                 HHSTTTSCCHHHHHHHHHHHHHHH CS
        DnaJ  27 kyHPDknpkdpeaeekFkeineAy 50 
                 k  P k+pk  +a   Fk+i  A+
  CDO70078.1 231 KPAPPKKPKRGTALVPFKQIVGAF 254
                 555677777778888999998776 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.6   2.5e-05      0.15      25      94 ..      85     158 ..      82     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
        Tho2  25 eqYekeieklkseieel....akdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekksw 94 
                 +qY+++ ++l +e+ee     +k+r+d++a+++++ +e++r+++   +L+eE++++  ++e+ +++L+++ +  
  CDO70078.1  85 AQYDAKRKNLVEELEERerafKKARTDSEAQKRERWRENERIMDEGRRLREERERELLRREQEREELERKANAA 158
                 689999999999888888887888899899999999*******************************9998765 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.1e-05      0.37      11      56 ..     207     257 ..     203     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.1e-05
                 SHHHHHHHHHTTSCEEEEEEEEE.....TTTSEEEEEEEEESSHHHHHHHH CS
       RRM_1  11 teeeLkelFskfGpiksiklvrd.....etgkskgfafVeFeskedAekAl 56 
                 +   + +l+s+fGpi + ++v        +++++g+a V F++   A +A+
  CDO70078.1 207 SAASIGALLSPFGPIDDSSIVLSlkpapPKKPKRGTALVPFKQIVGAFAAV 257
                 55677789*******76666666669999**************99998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2555.11
//
Query:       CDO70079.1  [L=122]
Description: hypothetical protein BN946_scf184806.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-34  117.6   4.4    1.8e-34  117.4   4.4    1.0  1  Synaptobrevin  Synaptobrevin
  ------ inclusion threshold ------
      0.036   13.0   0.5      0.042   12.8   0.5    1.0  1  TMEM117        TMEM117 protein family
      0.067   13.4   0.1       0.12   12.6   0.1    1.3  1  Shisa          Wnt and FGF inhibitory regulator
        1.7    7.0   6.9        1.8    6.8   6.5    1.3  1  DUF515         Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   4.4   3.9e-38   1.8e-34       2      88 ..      31     117 ..      30     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 3.9e-38
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivic 88 
                    n+k+a+i++++d++++im+eNi kv erge+ld+L+dkt+nL+ saq F++ a++++++mwwk+mk++ii++++++i+i+ii+++++
     CDO70079.1  31 NSKTAAIQQQIDDTVGIMRENITKVAERGERLDQLQDKTDNLAVSAQGFRRGANRVRKNMWWKDMKMRIIIGVAIAIIIIIIVVSVV 117
                    7899*******************************************************************************9987 PP

>> TMEM117  TMEM117 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   9.4e-06     0.042     134     215 ..      38     119 ..      31     122 .] 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.4e-06
     TMEM117 134 aykisdllGirnesfmkvaavGtwlGdfvtawmvtdmm.lqdkkyeewakslrk..fwkkglnriivfwsvllsltsvvvlvitt 215
                 + +i d++Gi  e+  kva  G  l  +      td + +  + + + a+++rk  +wk  ++rii+  ++++++ ++vv+v+ +
  CDO70079.1  38 QQQIDDTVGIMRENITKVAERGERLDQLQDK---TDNLaVSAQGFRRGANRVRKnmWWKDMKMRIIIGVAIAIIIIIIVVSVVKA 119
                 678999****************999877654...5544134455666677776444******************99999999875 PP

>> Shisa  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.7e-05      0.12      45     104 ..      60     117 ..      56     120 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
       Shisa  45 arldqstCtndeteeslktgreekekqlgsalevp..kdiyvpvlivktifivfvivgvvvi 104
                 +rldq + ++d+ + s +  r+  ++   ++   +  kd+ + ++i++ i i+++i++v v+
  CDO70079.1  60 ERLDQLQDKTDNLAVSAQGFRRGANR-VRKN---MwwKDMKMRIIIGVAIAIIIIIIVVSVV 117
                 68887777777776676666644333.2233...1346888999999888877777766554 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.5   0.00041       1.8      23      49 ..      90     116 ..      66     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00041
      DUF515  23 lrekerrkrliiGasvlvvivillvfa 49 
                 +  k++++r+iiG ++ ++i+i++v  
  CDO70079.1  90 MWWKDMKMRIIIGVAIAIIIIIIVVSV 116
                 55699********99988887776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      859  (0.0479112); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 873.85
//
Query:       CDO70080.1  [L=344]
Description: hypothetical protein BN946_scf184806.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2331.10
//
Query:       CDO70081.1  [L=914]
Description: hypothetical protein BN946_scf184806.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-73  246.8   0.0    3.3e-73  246.3   0.0    1.2  1  Pkinase        Protein kinase domain
    1.7e-41  142.2   0.0    2.4e-41  141.8   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    1.2e-11   44.5   0.0    1.9e-11   43.9   0.0    1.2  1  Kinase-like    Kinase-like
    0.00086   18.7   0.2     0.0018   17.7   0.2    1.5  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.024   13.6   0.1      0.046   12.6   0.1    1.4  1  Haspin_kinase  Haspin like kinase domain
      0.052   13.0   0.3        0.1   12.0   0.3    1.4  1  Ntox14         Novel toxin 14
       0.21   12.3   0.7       0.89   10.2   0.7    2.1  1  WBP-1          WW domain-binding protein 1
        8.6    6.2   8.0       0.71    9.7   0.1    2.8  4  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   0.0   1.5e-76   3.3e-73       1     264 []      44     290 ..      44     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.3 bits;  conditional E-value: 1.5e-76
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+  + +GeG++GkV  +v++ tg  vA+K+i k          ++rEi+ +++l+hp++ +lyev+ ++++++lv+e+++ggel+d+l +kg l+eee
  CDO70081.1  44 YTLGKVIGEGTYGKVRMGVHRLTGTRVAIKQIPKAMSAA-----LTREIHHHRQLHHPHVTQLYEVIATETNIWLVTELCSGGELFDYLAEKGRLNEEE 137
                 677899***************************986655.....779**************************************************** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppf 197
                 ++ ++ q++ +++y+H+kgi+HrDlK eN+L+de+  +K++DFG+ +e++++s l++f+gt  Y APE+l +++y +++vDvWslGvily+lltg  pf
  CDO70081.1 138 TRMLFGQLCLAVAYVHEKGIVHRDLKLENVLLDERCRVKLGDFGFTREFDKGSLLETFCGTTGYAAPEMLMAKRYlGPEVDVWSLGVILYTLLTGMLPF 236
                 **********************************************************************999999*********************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  +++++      +++     k++   k +++ ++ +s+ea++l+ ++l++dp++Rlt++++l hp++
  CDO70081.1 237 DDDDER-----VMRE-----KVI---KGEYEDPEWLSDEARNLIANILQVDPTRRLTIAQILTHPWF 290
                 *33332.....3444.....343...447899999*******************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.0   1.1e-44   2.4e-41       2     256 ..      45     285 ..      44     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 1.1e-44
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  +lgk +GeG++GkV +g  +     + ++Va+K++ + ++    ++l++e++  ++l+hp++ +l+ v+  e ++++vte+++gG+L ++L +k   +
   CDO70081.1  45 TLGKVIGEGTYGKVRMGVHR----LTGTRVAIKQIPKAMS----AALTREIHHHRQLHHPHVTQLYEVIATETNIWLVTELCSGGELFDYLAEK--GR 132
                  5789**************99....999********55444....47**********************************************98..99 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEE.EHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkf.tsksDvWsfGvllw 196
                  l+ +++  +  q++ +++y+++k +vHrdl   NvLl+e+  vk++DfG +r+    d+ +  e+      + apE+l++k++   + DvWs Gv+l+
   CDO70081.1 133 LNEEETRMLFGQLCLAVAYVHEKGIVHRDLKLENVLLDERCRVKLGDFGFTREF---DKGSLLETFCGTTGYAAPEMLMAKRYlGPEVDVWSLGVILY 227
                  ******************************************************...33334455566789*******999962689*********** PP

                  HHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 197 EiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                   ++t g  p+ + +++ + ek+ +g+  e pe  ++e  +l+ + ++ dp++R t+++++
   CDO70081.1 228 TLLT-GMLPFDDDDERVMREKVIKGE-YEDPEWLSDEARNLIANILQVDPTRRLTIAQIL 285
                  ****.*******99999999998775.789**************************9997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.3e-15   1.9e-11     149     288 .]     141     278 ..     114     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.3e-15
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                  l  ql   +a+ ++kg+vh +++ +n+llde+ +++lg+f+  +   +   l + +   g+a pE+l ++             ++d+W lG+  y + 
   CDO70081.1 141 LFGQLCLAVAYVHEKGIVHRDLKLENVLLDERCRVKLGDFGFTREFDKGSLLETFCgtTGYAAPEMLMAKRY--------LGPEVDVWSLGVILYTLL 230
                  446777789*******************************9765555555557777889*******998544........5569************** PP

  Kinase-like 245 clklPltlateeakeew....kfklckkipekvkaLlkkfLqlsqedR 288
                     lP++ + e +  e     +++  +  +++ + L++++Lq++  +R
   CDO70081.1 231 TGMLPFDDDDERVMREKvikgEYEDPEWLSDEARNLIANILQVDPTRR 278
                  *********9999888777778999999999***********987776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   7.8e-07    0.0018      94     155 ..     113     173 ..      72     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.8e-07
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 l+te      +L d+la+  +l+ee +r+l+ ++  ++a  h+ g+ H+dl   n+ll+++ 
  CDO70081.1 113 LVTELCS-GGELFDYLAEKGRLNEEETRMLFGQLCLAVAYVHEKGIVHRDLKLENVLLDERC 173
                 4555433.3568899999788*************************************9985 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.1e-05     0.046     215     255 ..     146     184 ..      77     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
  Haspin_kinase 215 ivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                    ++++ yv E+     HRdL+l+n+L+d+   v l d+   R
     CDO70081.1 146 CLAVAYVHEKG--IVHRDLKLENVLLDERCRVKLGDFGFTR 184
                    66777777775..56*********************99888 PP

>> Ntox14  Novel toxin 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   4.6e-05       0.1      45     118 ..      27      96 ..       7     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
      Ntox14  45 rellealasdkvdtweeyvktdevsaatfgglrvGihGqltGlrlGdvdlekvsGeqaGmmsrparedrashhi 118
                  el + l+s+k+    +y+  +   + t+g +r+G+h +ltG r+   +  k+       ++r  +  r+ hh 
  CDO70081.1  27 NELGKELSSQKIRVVGNYTLGKVIGEGTYGKVRMGVH-RLTGTRVAIKQIPKAM---SAALTREIHHHRQLHHP 96 
                 46667899*****************************.688*998776665555...4456799******9984 PP

>> WBP-1  WW domain-binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7    0.0004      0.89      42     102 ..     721     781 ..     708     782 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
       WBP-1  42 krraklrleqqerqreinlvayreaknsaslvldlrllaslklPsyeevlkaarpetPpPp 102
                  r++k+r +q+er+re ++ +++++++           + +k P+  +v+ +a ++tPpP+
  CDO70081.1 721 EREEKEREQQRERDREKEKEKKNGSSEEPRASHGSGSSKLVKTPPMRAVKDSALSSTPPPS 781
                 366779999999999999999999999999999999999**********99999****995 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.2e+03      15     106 ..      63     153 ..      59     154 .. 0.65
   2 ?    9.7   0.1   0.00032      0.71     165     187 ..     154     175 ..     144     184 .. 0.84
   3 ?   -4.0   0.9       5.2   1.2e+04     130     144 ..     547     562 ..     516     587 .. 0.53
   4 ?   -1.6   0.0       0.9     2e+03     115     170 ..     806     865 ..     798     866 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
                 EEEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHH CS
         APH  15 lvttpagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalh 106
                 ++ t++ r++ +++p+a   + + re +  r+L+   v +  ev+a    ++ i+l+ +l ++ +  ++l    +l++++++ l+++l  + a +h
  CDO70081.1  63 HRLTGT-RVAIKQIPKA-MSAALTREIHHHRQLHHPHVtQLYEVIA---TETNIWLVTELCSGGELFDYLAekgRLNEEETRMLFGQLCLAVAYVH 153
                 555544.8888888888.4455555555555555444667888888...78888886666666555555556666678888888888877766555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00032
                 -EEEE-SS-SGGGEEEC..TTEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrv 187
                 +++++H+Dl++ N+l+d +  rv
  CDO70081.1 154 EKGIVHRDLKLENVLLD-ERCRV 175
                 689**************.65665 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5.2
                 HCHHHCCCGCCTCC.H CS
         APH 130 esatarllaselld.l 144
                 e+++++  a++l++ +
  CDO70081.1 547 EQERPAAEAAALQEkR 562
                 2222233333333322 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.9
                 B-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S......SS-EEEE- CS
         APH 115 ladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg......elptvllH 170
                  ++ +a++l+ l+q++s+ ++++a+  +  ++ l + + +++++   g      + ++vl+H
  CDO70081.1 806 DTGSPADTLTSLPQIPSR-NGKVAAGHRN-RASLLSTFQRWFREDPKGkrkedpAMAAVLTH 865
                 456677889999999999.3555655555.88888855555555555588888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1517  (0.0846115); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 5590.37
//
Query:       CDO70082.1  [L=471]
Description: hypothetical protein BN946_scf184806.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-51  172.5   0.0    1.7e-50  171.6   0.0    1.5  1  GLE1        GLE1-like protein
  ------ inclusion threshold ------
      0.021   14.6   2.1       0.53   10.1   0.8    2.4  2  Staygreen   Staygreen protein


Domain annotation for each model (and alignments):
>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   1.9e-54   1.7e-50       4     250 ..     191     430 ..     188     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 1.9e-54
        GLE1   4 kqikknlleqvkedkelkkllgdlkrkInpkvgQltnsseqlkkitkelkellesgkpvkvadkpelaykyllnflAkalvsqaetevsakpeaAfplA 102
                 k ik+  l+ vk dk+lk+++++ +r+I+pk+gQltn+se +++i++++ e++   +p+     p+++y+ ll+ lAka++ qaetev+a++ +A+plA
  CDO70082.1 191 KGIKTGPLKIVKGDKALKSIWSAGRRAITPKIGQLTNDSEAIMRISQQIVEIIRPPQPH-----PQPVYIALLSSLAKAILLQAETEVTAEKRSAIPLA 284
                 5566666788999****************************************888886.....9********************************** PP

        GLE1 103 rvavgllsehpelgdlllArlvkkC.pylvpfypakkegqs...teeyr.krlGykrsddgkletedkyleRmsGiirlYaaiiqtelsksskenphpp 196
                 +va +ll  ++ ++d+++A+l+++   + vp ++++k+ +    te++r k+lGy+ +d    e+ ++y+ R++G+ir+Y+ i++t++++    +p+  
  CDO70082.1 285 QVATNLLGALEGFADVFWAKLCQRAgGWPVPIVVPNKDADGtpfTEDGRrKALGYRSED----ESLSEYTTRVTGMIRVYFQILVTPVNQ--PLDPI-V 376
                 ************************999*****98877744457889998789****866....899********************7544..34444.5 PP

        GLE1 197 gleiaWrwlarilnlpleplsnitatllaafLevagnrllkaYgkqfqKlleli 250
                  l+  W++++r+l+ p+ + s + +++l++ L+v g    +++g+q+  ll l+
  CDO70082.1 377 RLPRYWTFFSRMLKEPQLLDSSVAPQVLYTALDVGGVLAREVWGQQWVRLLALL 430
                 66666**********************************************987 PP

>> Staygreen  Staygreen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0067        60      71      98 ..       6      33 ..       1      42 [. 0.88
   2 ?   10.1   0.8     6e-05      0.53      32      85 ..      51     101 ..      34     112 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0067
   Staygreen 71 lhvhvyvsggelllelaaelRyeiFrke 98
                 +v ++v+++   +e+++e+R+e Frke
  CDO70082.1  6 ASVRLHVNHHDPYEEWEKETRQEAFRKE 33
                578999**9999**************98 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6e-05
   Staygreen  32 DltaeLtLtigekfaldklqkklrDeVlaeWkkdkgelvlhvhvyvsggellle 85 
                 ++++e+ ++++  ++l+k   +  De laeWk ++++l+ ++  +++++e + +
  CDO70082.1  51 EQMREVQMHLAA-MNLKKK--QEEDELLAEWKARDQKLWQRIDAVIKKEEEKAR 101
                 555555555543.344442..578*******************99985554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3123  (0.174187); expected 358.6 (0.02)
Passed bias filter:                      889  (0.0495845); expected 358.6 (0.02)
Passed Vit filter:                       374  (0.0208601); expected 17.9 (0.001)
Passed Fwd filter:                       106  (0.00591221); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.56u 0.40s 00:00:01.96 Elapsed: 00:00:00.56
# Mc/sec: 2542.87
//
Query:       CDO70083.1  [L=305]
Description: hypothetical protein BN946_scf184806.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2217.12
//
Query:       CDO70084.1  [L=74]
Description: hypothetical protein BN946_scf184806.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-07   31.2   0.0    1.9e-07   31.0   0.0    1.1  1  HTH_3         Helix-turn-helix
    5.2e-07   29.9   0.0    6.1e-07   29.7   0.0    1.1  1  HTH_31        Helix-turn-helix domain
    0.00069   19.6   0.0    0.00091   19.2   0.0    1.1  1  HTH_19        Helix-turn-helix domain
     0.0047   16.7   0.1      0.011   15.5   0.0    1.6  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.093   12.4   0.0       0.28   10.9   0.0    1.7  2  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.3e-11   1.9e-07       1      51 [.      10      60 ..      10      63 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.3e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51
                l+++ +++g+s  ++A+ +G + +++ +i  G + P+ +   +la++Lg++
  CDO70084.1 10 LAAAKEKKGWSYGQIAQQIGKPEQHVIDICTGAATPTTDEFNALARVLGIT 60
                567889*******************************************87 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.7e-10   6.1e-07       5      59 ..       9      65 ..       8      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.7e-10
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld...pa 59
                 L+a+ e+ G+s  + A+++g  e ++ ++ +G+ + p+ +  +alar+lg +   p+
  CDO70084.1  9 ALAAAKEKKGWSYGQIAQQIGKPEQHVIDICTGAAT-PTTDEFNALARVLGITsapPH 65
                5999*******************************6.**************8634355 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.5e-07   0.00091       3      55 ..       9      60 ..       8      62 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.5e-07
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid 55
                 L +a e++g++  ++a+++g      + i +g   +p+ ++++++a+ lgi+
  CDO70084.1  9 ALAAAKEKKGWSYGQIAQQIGKPEQHVIDICTGAA-TPTTDEFNALARVLGIT 60
                5899*****************************99.***************96 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-06     0.011      10      34 ..       9      35 ..       6      39 .. 0.79
   2 ?   -2.1   0.0         1   3.7e+03      24      30 ..      54      60 ..      52      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-06
      HTH_23 10 illllae..GlsvreIAreLgvsrrTv 34
                +l +++e  G+s+ +IA++ g ++++v
  CDO70084.1  9 ALAAAKEkkGWSYGQIAQQIGKPEQHV 35
                444555589**************9998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
      HTH_23 24 AreLgvs 30
                Ar Lg++
  CDO70084.1 54 ARVLGIT 60
                8999996 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.7e-05      0.28      25      41 ..      17      33 ..      14      35 .. 0.89
   2 ?   -1.3   0.0      0.49   1.7e+03      33      40 ..      54      61 ..      52      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.7e-05
                  S---HHHHHHHHT--HH CS
  Sigma70_r4_2 25 eglsykEIAellgiseg 41
                  +g+sy +IA+++g +e+
    CDO70084.1 17 KGWSYGQIAQQIGKPEQ 33
                  59***********9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.49
                  HHHHT--H CS
  Sigma70_r4_2 33 Aellgise 40
                  A++lgi++
    CDO70084.1 54 ARVLGITS 61
                  99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 577.64
//
Query:       CDO70085.1  [L=151]
Description: hypothetical protein BN946_scf184806.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-47  158.5   1.5    8.4e-47  158.1   1.5    1.1  1  Ribosomal_S11  Ribosomal protein S11
  ------ inclusion threshold ------
      0.096   13.0   0.0       0.19   12.0   0.0    1.5  1  CBM_25         Carbohydrate binding domain (family 25)


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   1.5   9.3e-51   8.4e-47       1     110 []      29     147 ..      29     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 9.3e-51
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasr.kssPyaaqlaaekaaekvldkGikavevkvkg........pGpGreaalralaraGl 87 
                    Gvahi+asfn+t++++tdl+G+e++++ +Gg++vka+r +ssPyaa+laa+++a ++ + Gi+a+++k+++        pGpG+++alralar+G+
     CDO70085.1  29 GVAHIFASFNDTFVHVTDLSGKETISRVTGGMKVKADRdESSPYAAMLAAQDVAARCREVGITALHIKLRAtggtgtktPGPGAQSALRALARSGM 124
                    9*********************************************************************************************** PP

  Ribosomal_S11  88 kigriedvtPiPhdgirrpkkrr 110
                    +igriedvtPiP+d++rr+++rr
     CDO70085.1 125 RIGRIEDVTPIPTDSTRRKGGRR 147
                    ********************998 PP

>> CBM_25  Carbohydrate binding domain (family 25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19      12      57 ..      85     130 ..      78     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
      CBM_25  12 trkkGftsayihyrpaGGswtavpGvkmrdaeaGyakkdvdlGaas 57 
                 +r+ G t+ +i+ r +GG+ t +pG + ++a    a+  + +G   
  CDO70085.1  85 CREVGITALHIKLRATGGTGTKTPGPGAQSALRALARSGMRIGRIE 130
                 6899***************************999998888888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1062.34
//
Query:       CDO70086.1  [L=523]
Description: hypothetical protein BN946_scf184806.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-05   23.1   0.0    7.1e-05   22.4   0.0    1.4  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     4e-09   7.1e-05      54     134 ..       3     108 ..       1     109 [. 0.85

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4e-09
  Acyltransferase  54 sipllgflmrllgfifidR...............ksnaraagsleniselleegklvviFPEGtrsregellpfkkGlvrlaakak........ 124
                      +  l++ ++ ++g i++ R               ++ a++a + e + ++l +++++++FPEGt   e ++ + k G+ ++a++ +        
       CDO70086.1   3 KNALVRAILLSSGSIPVARnpnttptaaeqptypQNTANKALFRE-TFKALDREEVIGVFPEGTSYTECRIAQVKDGASHAALEYVkwvkqtrg 95 
                      566788888899999999999999999988888555554444444.44799999*******************************99999**** PP

  Acyltransferase 125 ...kgvpivPvai 134
                         k++ +vPv+i
       CDO70086.1  96 glsKKLLVVPVGI 108
                      *9999*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3792.21
//
Query:       CDO70087.1  [L=117]
Description: hypothetical protein BN946_scf184806.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.7   0.1       0.27   11.0   0.1    1.4  1  DUF4904   Domain of unknown function (DUF4904)


Domain annotation for each model (and alignments):
>> DUF4904  Domain of unknown function (DUF4904)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.5e-05      0.27      90     121 ..       4      35 ..       1      40 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
     DUF4904  90 lldffrldeegisyiwpmldpkaliedsdall 121
                 ++ ff   eegi  iwp+    al++  + l+
  CDO70087.1   4 FFAFFSWLEEGIITIWPVTTGIALLKIEEILI 35 
                 7789**************99988887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 943.16
//
Query:       CDO70088.1  [L=901]
Description: hypothetical protein BN946_scf184806.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0089   15.9   2.8      0.015   15.1   2.8    1.3  1  ERM       Ezrin/radixin/moesin family
  ------ inclusion threshold ------
       0.12   12.4   0.5        0.6   10.1   0.1    2.1  2  Spc42p    Spindle pole body component Spc42p
       0.37   10.6   3.2          3    7.7   0.7    2.5  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.8   2.5e-06     0.015      52     122 ..      93     160 ..      91     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.5e-06
         ERM  52 LeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeea 122
                 L++++a+++ee++rl++++e+  + k+k  +  + +    ++l++++++keeea+rL++e+++ ++++++ 
  CDO70088.1  93 LQREKAQVKEEMARLRRAHERHVAVKDKDSAVSALV---EQQLVQAVTQKEEEADRLRREIKHLKAELRRY 160
                 89***************9999988887654444333...3679999****************999998765 PP

>> Spc42p  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0001       0.6       9      39 ..     131     161 ..     125     165 .. 0.91
   2 ?   -0.5   0.0      0.22   1.3e+03      38      59 ..     671     694 ..     666     707 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
      Spc42p   9 eLnkkldekqeEierLnvlvgslRaKLiKYt 39 
                 +L + +++k+eE +rL+  +  l+a L +Yt
  CDO70088.1 131 QLVQAVTQKEEEADRLRREIKHLKAELRRYT 161
                 68999*************************9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.22
      Spc42p  38 YtelnkKLe..dqlenlerssssl 59 
                  teln+ L   +ql +++r+s   
  CDO70088.1 671 LTELNRSLTqvAQLSQSDRRSTRS 694
                 699****98555666665555433 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.023   1.4e+02      15      38 ..      86     109 ..      82     119 .. 0.80
   2 ?    7.7   0.7    0.0005         3      20      51 ..     130     161 ..     125     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.023
                 XXXHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  15 gllaykqlkqeiaalqaelaklka 38 
                 gl  y +l++e a+ ++e+a+l+ 
  CDO70088.1  86 GLIGYLALQREKAQVKEEMARLRR 109
                 566788888899999998888875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 +ql q ++++++e ++l+ e++ L+ae+++++
  CDO70088.1 130 QQLVQAVTQKEEEADRLRREIKHLKAELRRYT 161
                 57778999********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6036.88
//
Query:       CDO70089.1  [L=211]
Description: hypothetical protein BN946_scf184806.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-27   93.9   0.4    5.5e-27   93.4   0.4    1.2  1  Synaptobrevin  Synaptobrevin
    6.7e-23   80.5   0.0      1e-22   79.9   0.0    1.3  1  Longin         Regulated-SNARE-like domain
  ------ inclusion threshold ------
       0.13   12.3   0.3       0.27   11.3   0.3    1.4  1  ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.4   9.3e-31   5.5e-27       3      80 ..      96     173 ..      94     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 9.3e-31
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXX CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlili 80 
                    d+l++++ae+ +vkdim +N++++l+rge++++Lvdkt+n++++a +F++ ar+++r mwwkn ++ ++ ++v+l+  
     CDO70089.1  96 DELSRAQAELAQVKDIMVQNVEQILSRGERIELLVDKTDNMATQATAFRRGARTVRRSMWWKNTRILALSVVVALVRA 173
                    899***************************************************************999999988755 PP

>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   1.7e-26     1e-22       3      83 ..       1      79 [.       1      80 [. 0.91

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.7e-26
      Longin  3 lilkkishsspqkltythdsytfhylaedgltylviadesyprrlaFafLeeikreFlakygtaktadaadlrpyafa.eFd 83
                +il+ki++++ +klty  ++y+fhy++e+g+tylv+ad++++rr++F+fL e++++F+++    ++ + +d ++y+++  F+
  CDO70089.1  1 MILSKIPPNN-SKLTYVWEQYLFHYISEEGFTYLVMADDAAGRRMPFTFLAELQQRFTSQPLA-SS-SLSDPPAYSMQgTFG 79
                59*****988.******888***************************************9874.34.45689*****99996 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   4.5e-05      0.27       3      54 ..     102     152 ..     101     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
                    HHHHHHHHHHHHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHH CS
  ClpB_D2-small   3 keelkkIvdlalkklekrlke.rgvelevtdealdalaekgydpeyGARpLrr 54 
                    ++el ++ d++++++e+ l++ +++el v++   d +a +++  + GAR +rr
     CDO70089.1 102 QAELAQVKDIMVQNVEQILSRgERIELLVDK--TDNMATQATAFRRGARTVRR 152
                    57899**************866667777766..69*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1651.32
//
Query:       CDO70090.1  [L=506]
Description: hypothetical protein BN946_scf184806.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.023   14.7  10.3       0.18   11.8   9.9    2.2  2  Cep57_CLD       Centrosome localisation domain of Cep57
      0.051   12.9  14.0      0.017   14.5  11.3    1.5  2  GAS             Growth-arrest specific micro-tubule binding
       0.27   11.6   9.6        0.6   10.5   9.6    1.5  1  OmpH            Outer membrane protein (OmpH-like)
       0.42   10.7   4.8        1.3    9.2   0.4    2.5  2  Prefoldin_3     Prefoldin subunit
        3.9    6.7  10.1        9.7    5.4  10.1    1.6  1  DUF4407         Domain of unknown function (DUF4407)
        6.1    7.6   8.9         34    5.2   2.1    3.2  3  Occludin_ELL    Occludin homology domain


Domain annotation for each model (and alignments):
>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.9   6.1e-05      0.18      64     136 ..      34     109 ..      10     132 .. 0.67
   2 ?    0.6   0.0      0.17   5.1e+02     117     158 ..     369     410 ..     355     419 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
   Cep57_CLD  64 sqLaaaesrcslLEkqLeymrk..mvesaekerkavlekqaslekek.kqesselqaklekLekLEkeylrLtatq 136
                 +qLa ae+rcs LE qL++ r+   + +a  er+++ e++    +++ ++e+++l+a++++ ++ +++y + +a+ 
  CDO70090.1  34 QQLADAETRCSELEAQLQKERQesDILKAALERQNAAERELLAVQRNlEEENTRLRAERNDWRTSDRKYDQCSAEY 109
                 79***************99997333667889999999955444333335555555555555444444444443332 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.17
   Cep57_CLD 117 aklekLekLEkeylrLtatqklaekkikeLeekLkeEehqrk 158
                 +     + +Ekey+ Lt++ ++   k  +  +k   E++qr 
  CDO70090.1 369 SMSHSASSVEKEYSALTQRPQYLSAKPVSSASKAAMEHQQRT 410
                 555556778999999999888888887777888888877775 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  11.3   5.6e-06     0.017      46     135 ..      33     121 ..      27     131 .. 0.92
   2 ?   -3.7   0.0       2.1   6.3e+03     117     128 ..     376     387 ..     368     410 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.6e-06
         GAS  46 ekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqe 135
                 +++l++++++ ++l+ +L+k ++e + L+++l++++    +l +++++l+e +  l++ + + +    ++++ ++e+++l+++ +a i++
  CDO70090.1  33 RQQLADAETRCSELEAQLQKERQESDILKAALERQNAAERELLAVQRNLEEENTRLRAERNDWRTSDRKYDQCSAEYQQLSEELQA-IKD 121
                 68999****************************************************************************99876.554 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.1
         GAS 117 kvekerdelykk 128
                 +veke+ +l+++
  CDO70090.1 376 SVEKEYSALTQR 387
                 333333333332 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   9.6    0.0002       0.6      10      95 ..      25     117 ..      21     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
                 HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e....keekeqe...lqkkeqelqqkqqqkaqelqkkqqellkpil 95 
                 +l  ++ g++  ++ e+  ++l+a+l+++++e + l+++l+++++++ e    +++ e+e   l+++++++++  ++k+ +  ++ q+l ++++
  CDO70090.1  25 LLYRYTLGRQQLADAETRCSELEAQLQKERQESDILKAALERQNAAErEllavQRNLEEEntrLRAERNDWRT-SDRKYDQCSAEYQQLSEELQ 117
                 5666777888888888889**********************99988766999944444446689999999999.88888666666655555422 PP

>> Prefoldin_3  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.043   1.3e+02      11      44 ..      47      83 ..      35      87 .. 0.72
   2 ?    9.2   0.4   0.00042       1.3       3      31 ..      91     119 ..      89     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.043
  Prefoldin_3 11 eaeydglkeeisalke...eddateedllriardfeg 44
                 ea++++ ++e + lk+   +++a+e +ll ++r++e 
   CDO70090.1 47 EAQLQKERQESDILKAaleRQNAAERELLAVQRNLEE 83
                 44555555555555545556799**********9986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00042
  Prefoldin_3   3 slyklreweaeydglkeeisalkeeddat 31 
                  +++++r+++ +yd+  +e+++l+ee +a 
   CDO70090.1  91 ERNDWRTSDRKYDQCSAEYQQLSEELQAI 119
                  67899999999999999999998844333 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.1    0.0032       9.7     146     236 ..      33     126 ..       8     136 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0032
     DUF4407 146 qaeidaaearldalraeaqkeldgtk......gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaa 236
                 +++++ ae+r ++l+a++qke +           +  + +   ++ ++ ++++++++ae ++++++   + + ++  ae+++l +e+++++++++ +
  CDO70090.1  33 RQQLADAETRCSELEAQLQKERQESDilkaalERQNAAERELLAVQRNLEEENTRLRAERNDWRTS---DRKYDQCSAEYQQLSEELQAIKDTHTVR 126
                 456666666666666666666665445533332222233333444444555555555555555555...8888888888888888888888877655 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   6.7       0.3   8.9e+02      27      94 ..      46     121 ..       9     122 .. 0.63
   2 ?    5.2   2.1     0.011        34      26      86 ..      76     136 ..      68     137 .. 0.73
   3 ?    2.4   0.0     0.088   2.6e+02      48      79 ..     363     394 ..     355     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.3
  Occludin_ELL  27 lhaeleevskkfseLerelkelkegsk.......eykkieeeilqeykklkk.dpeyqekkkrceyLkekLshiKk 94 
                   l+a+l++ +++   L++ l++++  ++       + ++ + ++  e ++++  d++y +  ++ ++L+e+L+ iK 
    CDO70090.1  46 LEAQLQKERQESDILKAALERQNAAERellavqrNLEEENTRLRAERNDWRTsDRKYDQCSAEYQQLSEELQAIKD 121
                   4555555555555555444444444442232222222222222233333333488888888999999999999985 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
  Occludin_ELL  26 elhaeleevskkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkrceyLk 86 
                   +++++lee + +++  ++++++++++ ++ +   +++ +e++ +k +++ ++ ++r  yL+
    CDO70090.1  76 AVQRNLEEENTRLRAERNDWRTSDRKYDQCSAEYQQLSEELQAIKDTHTVRSLETRQFYLH 136
                   5667777777777777777777777777777777777888888888888888888888877 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.088
  Occludin_ELL  48 lkegskeykkieeeilqeykklkkdpeyqekk 79 
                   ++ +++ +++ ++++ +ey+ l++ p+y+++k
    CDO70090.1 363 SPVSTTSMSHSASSVEKEYSALTQRPQYLSAK 394
                   5556668889999999************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3312.96
//
Query:       CDO70091.1  [L=357]
Description: hypothetical protein BN946_scf184806.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.2e-130  433.1   5.3     3e-128  427.8   1.9    2.0  2  Mo25      Mo25-like


Domain annotation for each model (and alignments):
>> Mo25  Mo25-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.8   1.9  1.6e-132    3e-128       2     307 ..       3     311 ..       2     315 .. 0.98
   2 !    6.8   0.1   0.00022       3.9     310     326 ..     341     357 .]     338     357 .] 0.95

  Alignments for each domain:
  == domain 1  score: 427.8 bits;  conditional E-value: 1.6e-132
        Mo25   2 lfkk.qktpaelvkslkellskld....nskkkkkaeeelskqLkslkeillgdpdtepskeqvaqLlqeilkedllyklvknlkklefearkdvaqif 95 
                 +fk+ q+tp +lv+ l+++l +l+      + ++ka+e+++k+L+++k+illg  d +p++e+vaqL+qe++++dll +l++n++klefe+rkdv+qif
  CDO70091.1   3 FFKTkQRTPPDLVRGLRDALPRLEagppGGEVRRKANEDVAKNLQQIKTILLG--DGDPTPELVAQLAQETYNTDLLLHLIQNIHKLEFESRKDVVQIF 99 
                 577789*********************9777899*******************..999***************************************** PP

        Mo25  96 snllrrktksklpaveyletkpeilqlllegyeskeialhagsilrecikyealariiLyseefwkffeyvensnfeiasdafetlkelLtkhkklvae 194
                 +nllrr+++s++p+veyl++kpeil + ++gy+++eial++g+ilre++++e la+++Lyse+f+kf +y+e+++f i++da + lke+Lt+hk++vae
  CDO70091.1 100 NNLLRRQIGSRFPTVEYLSSKPEILFAAFDGYSNEEIALNTGMILREMLRHEPLAKMLLYSEQFYKFPHYIESTTFGISCDAYTNLKETLTRHKAMVAE 198
                 *************************************************************************************************** PP

        Mo25 195 fleenfdeffkyinkllqsenYVtkrqslkLLgelLldrsnlkvmtrYvsspenLklimnlLkdkskniqfeaFhvFKvfVanpnKskpvqkiLikNrd 293
                 +l++n+d+ff+++++l+ s+nYVtkrqslkLLge+Lldr+n++vmtrY+++++nLk++mn+L+dkskniqfeaFhvFKvfVanp+K+++++ iL +N+d
  CDO70091.1 199 YLDKNYDRFFSSFTTLILSNNYVTKRQSLKLLGEILLDRANFNVMTRYIANEANLKMMMNMLRDKSKNIQFEAFHVFKVFVANPKKPPQIEGILRRNKD 297
                 *************************************************************************************************** PP

        Mo25 294 kLlkfledfqtdre 307
                 kLlkfl+df++d+e
  CDO70091.1 298 KLLKFLKDFHNDKE 311
                 ************93 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00022
        Mo25 310 eqfkdEkeflikqieeL 326
                 +qf+dEk+fli qi++L
  CDO70091.1 341 SQFQDEKQFLIVQIQSL 357
                 69*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2542.89
//
Query:       CDO70092.1  [L=212]
Description: hypothetical protein BN946_scf184806.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1525.21
//
Query:       CDO70093.1  [L=277]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-30  106.6   0.0    1.6e-30  106.2   0.0    1.1  1  Glycos_transf_2  Glycosyl transferase family 2
    3.2e-10   40.3   0.0    4.4e-10   39.9   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.016   14.7   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
      0.018   14.5   0.0      0.047   13.2   0.0    1.8  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   3.6e-34   1.6e-30       1     165 [.       7     174 ..       7     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 3.6e-34
                      EEEEEESS-TTTHHHHHHHHHHH.......GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq.......dpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflD 87 
                      svv+p++ e  +++ +++++ +         ++ ++e+i+vDD+S+D++ve +e+l++e+ +vr+i r+  +G+++a+ +g+r+a+gd +l++D
       CDO70093.1   7 SVVVPAFRENGNIRPLVTRIFRAlsqvnspVNPNEVEVIIVDDNSRDGSVETVEALRREGYNVRIIVRTTERGLSSAVVRGFREAQGDNMLCMD 100
                      8********99999999999888888***999************************************************************** PP

                      SSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHH CS
  Glycos_transf_2  88 aDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrea 165
                      aD++++p++++ +++al   +++ vlg+r+++++e de ++ +r   + +  + +       ++s+  ++++++r+e 
       CDO70093.1 101 ADLQHPPEYVPAMLAALSP-NKQFVLGTRYAKGVEIDEGWPLYR---RVISSGARMLALPLTSASDPMSGFFGIRKET 174
                      *******************.999******************986...7888888888888888888888888888875 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   9.7e-14   4.4e-10       4     120 ..       6     124 ..       4     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 9.7e-14
  Glyco_tranf_2_3   4 lavlVptfneed....vlgevlesllaqey....pr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravks 88 
                      ++v+Vp+f+e+      ++++ ++l+   +    p+ vev++v+d+s+++ +e++e+l ++ +   vr++v++ +    g s a+++++r +++
       CDO70093.1   6 YSVVVPAFRENGnirpLVTRIFRALSQV-NspvnPNeVEVIIVDDNSRDGSVETVEAL-RREGY-NVRIIVRTTER---GLSSAVVRGFREAQG 93 
                      69**********4444444444444422.23333558******************997.44444.58999998854...5666678******** PP

  Glyco_tranf_2_3  89 dlvllvDdDtvvePdtlkrllqffltpkvgav 120
                      d  l +D+D    P++++++l+++ +p+  +v
       CDO70093.1  94 DNMLCMDADLQHPPEYVPAMLAAL-SPNKQFV 124
                      *********************999.7766555 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.5e-06     0.016      27     103 ..      39     114 ..       7     125 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.5e-06
  Glyco_tranf_2_2  27 deeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekil 103
                       +e+e+i+vdd S +  +e v+++     +v +     +  +l+ a  rG+ +a++d +l +DaD    ++ + ++l
       CDO70093.1  39 PNEVEVIIVDDNSRDGSVETVEALRREGYNVRIIVR-TTERGLSSAVVRGFREAQGDNMLCMDADLQHPPEYVPAML 114
                      4689************99999999887777743322.456788888899****************887777776666 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.047      21      70 ..      83     131 ..      64     167 .. 0.84
   2 ?   -3.1   0.0         1   4.6e+03     106     119 ..     256     269 ..     254     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
  Glyco_transf_21  21 nllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgs 70 
                      ++++++++a+ d ++  D+d   +p+y+  +laal+ p+ ++V ++ ++ 
       CDO70093.1  83 AVVRGFREAQGDNMLCMDADLQHPPEYVPAMLAALS-PNKQFVLGTRYAK 131
                      4599********************************.8999998887754 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
  Glyco_transf_21 106 malrreaLeaiGGf 119
                      +++ r+ L ++GG+
       CDO70093.1 256 VLMARALLNSYGGL 269
                      689999******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1894.33
//
Query:       CDO70094.1  [L=382]
Description: hypothetical protein BN946_scf184806.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-05   24.3   0.1    0.00016   21.5   0.0    2.5  2  F-box-like  F-box-like
  ------ inclusion threshold ------
        0.2   11.6   1.4         11    6.0   0.1    3.2  3  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.7e-08   0.00016       3      48 .]       7      75 ..       5      75 .. 0.73
   2 ?   -1.3   0.1      0.23   2.1e+03      11      27 ..     313     329 ..     312     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.7e-08
  F-box-like  3 rLPdEiLlqIF........................syLppsd......LlrlalVCrrWrrvaldtplLWrrlvlr 48
                + P+EiL +I+                        s     +       ++  lVCr+W r+a  tp  +r++vlr
  CDO70094.1  7 DVPEEILERILalvlvqsaelstrppwhpyssgpsS-----SanayptVISPLLVCRSWLRIA--TPIHYRHPVLR 75
                67*********8888888777777666666544432.....133333366656**********..********986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
  F-box-like  11 qIFsyLppsdLlrlalV 27 
                  I+ +L+ps+L++  +V
  CDO70094.1 313 SILVWLSPSSLSAFGRV 329
                 69999******987766 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0013        11       2      16 ..       4      18 ..       3      20 .. 0.89
   2 ?    2.0   0.0     0.022     2e+02      28      36 ..      55      63 ..      47      68 .. 0.86
   3 ?    0.1   0.0     0.091   8.1e+02      14      29 ..     314     329 ..     312     329 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0013
                HHHHS-HHHHHHHHH CS
       F-box  2 tlsrLPsevlrhILe 16
                tl ++P+e+l+ IL 
  CDO70094.1  4 TLADVPEEILERILA 18
                789**********96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.022
                TT-HHHHHH CS
       F-box 28 rVSkgwril 36
                +V+++w ++
  CDO70094.1 55 LVCRSWLRI 63
                7*****987 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.091
                 HHHTS-HHHHHHHCTT CS
       F-box  14 ILerLplsdllalrrV 29 
                 IL +L++s+l a+ rV
  CDO70094.1 314 ILVWLSPSSLSAFGRV 329
                 8999*******99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2759.18
//
Query:       CDO70095.1  [L=211]
Description: hypothetical protein BN946_scf184806.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-12   46.5   0.0      5e-12   45.7   0.0    1.3  1  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   2.8e-16     5e-12       2     162 ..       6     152 ..       5     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.8e-16
                 EEEEEGGSSS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-T.TSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSE CS
   Lactonase   2 lyvGtytkgeskgiytlkldtetgkltplelvaelenPsyLalsp.dgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkl 99 
                 +++G y+      i t+ ++++   l+ l++  +++nPs++ l+p ++++lYa ne+ ++g + +f +++d +    ++++ss+g+ p+      +g+ 
  CDO70095.1   6 ILAGGYS----TFIATYLFNSDANTLSLLGQFPTGQNPSWIDLHPtNKSILYATNEN-SDGALQSFFFKQDGSLTAAIGQTSSGGNGPAFAVPLSTGE- 98 
                 5678888....6*******************************87256799*****9.************9555567888888888888776666666. PP

                 EEEEETTTTEEEEEEB.TT.SEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEET CS
   Lactonase 100 lavAnYsggsvsvfpldad.gslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpDL 162
                 +av n+++g+  v+p ++d  + +e   +++     p       +h+H++     g+ ++vpDL
  CDO70095.1  99 VAVMNFGSGNGLVVPTQEDpLEFTEGAPLISF----P----AAVSHPHMAL--EVGQEVFVPDL 152
                 9***************9985555555555533....3....4588999984..45778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1497.60
//
Query:       CDO70096.1  [L=368]
Description: hypothetical protein BN946_scf184806.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-33  116.7   0.0    9.7e-22   77.7   0.0    2.0  2  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   9.7e-14   1.7e-09       2      96 ..       6      96 ..       5     111 .. 0.88
   2 !   77.7   0.0   5.4e-26   9.7e-22     142     341 ..     154     363 ..     116     366 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 9.7e-14
                EEEEEGGSSS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-T.TSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TT CS
   Lactonase  2 lyvGtytkgeskgiytlkldtetgkltplelvaelenPsyLalsp.dgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvded 96
                +++G yt      + ++ ++++t +lt l++  +++nPs++ l+p ++++lY+vne+ + gg+ +f i+kd    +++++ +s+g+sp+  +   +
  CDO70096.1  6 ILAGGYT----TFVASYLFNSDTNALTLLNQSPTGANPSWISLHPtNKSILYTVNED-SPGGLQSFLIGKDGLLSSPIDTINSQGNSPAFTTPLST 96
                7899999....6*******************************8725679******8.*************888899***********98765555 PP

  == domain 2  score: 77.7 bits;  conditional E-value: 5.4e-26
                 STTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEEEEEEE-STT--EEEEEE-TTSSEEEEEETTTTEEEEEEEE.-TTTEEEEEEEEESS-TS CS
   Lactonase 142 sphaHsvvldpdgkfllvpDLGtDrvrvykldkatgkltepasvklppgsGPRHlaFhpdgkiaYvvnELsstvsvfsyd.eatgaleelqtvstlpeg 239
                  +h+H++    +g+ ++vpDLG+D++     + + g+   + +++ p+gsGPRH+a    g+++++v+EL+st++   ++ + +g+   + ++s lp+g
  CDO70096.1 154 VSHPHMA--LEHGSEVFVPDLGADKIWRLVENGSPGNWRIHGQIDQPKGSGPRHIAT--RGNTLFCVHELASTLTQQLIPpAPNGTTPLIANFSILPPG 248
                 58****9..567999***********88888888888989***************98..677**************98883557899***********9 PP

                 S-S-..--EEEEEE-TTSS.....EEEEEETS.......STEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE.-TTSSEEEEEETTTTE.EEEEEEET CS
   Lactonase 240 ftgk..nsaaeIrlspdgk.....flyvSnRg.......adsiavfavdeadgtltlveevstegkfPRdfal.dpsgklllvanqksdn.vtvferda 322
                 + +    ++aeI +++ ++     f+yvSnR         d ia+f+++++   l+lv+ v+t+ ++ R ++l  p+ ++l++++   d  v v++r  
  CDO70096.1 249 LPEGaaMAGAEILIAEASEhfpepFVYVSNRNtgvqdprGDAIAIFRIEPK---LELVGFVWTGLDQIRGMQLgGPEKEFLIAGGVAGDGgVIVLKRTD 344
                 5555234899****98753333339***********************555...*******************889999***99988776477777776 PP

                 TTTEEEEESEEEESSSEEE CS
   Lactonase 323 etGkLtelgkdievgepvc 341
                    + t l +++e+++ ++
  CDO70096.1 345 GGKNFTLLTRNLELPTRTS 363
                 6667777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2781.68
//
Query:       CDO70097.1  [L=151]
Description: hypothetical protein BN946_scf184806.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-30  103.9   0.4    3.8e-30  103.9   0.4    1.9  2  Ribosomal_L24e  Ribosomal protein L24e
  ------ inclusion threshold ------
       0.41   11.4   2.2       0.97   10.2   2.2    1.7  1  DUF680          Protein of unknown function (DUF680)
        5.3    7.7  12.9        7.9    7.1  12.9    1.4  1  Ribosomal_60s   60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.4   6.3e-34   3.8e-30       1      66 []       1      66 [.       1      66 [. 0.99
   2 ?   -1.6   0.7      0.56   3.4e+03      31      41 ..     109     119 ..      93     127 .. 0.53

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 6.3e-34
                    XXX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX.. CS
  Ribosomal_L24e  1 mktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkeltee 66
                    mkte+ sFsgy+iyP++G++fvr D+k+frF +sK e+lf+q++nPrk++WT++yRr+hkk++tee
      CDO70097.1  1 MKTEIDSFSGYRIYPSKGRLFVRGDNKIFRFATSKNESLFLQRKNPRKIAWTQVYRRMHKKGITEE 66
                    9*************************************************************9986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.56
                     ESSHHHHHHHH CS
  Ribosomal_L24e  31 FlssKceklfk 41 
                       ++K+ek  k
      CDO70097.1 109 IQKAKAEKKAK 119
                     33334433333 PP

>> DUF680  Protein of unknown function (DUF680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.2   0.00016      0.97      11      46 ..      95     127 ..      92     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00016
      DUF680  11 nQPaAtakvDtsaTaSirkthkladsgtevqtepgq 46 
                 nQ aA+    +++Ta+i+k +k+ ++ +e+++  ++
  CDO70097.1  95 NQSAAA--RAQARTAAIQK-AKAEKKAKEEKKDKSK 127
                 999999..779********.8878888887777666 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  12.9    0.0013       7.9      47      77 ..      88     124 ..      43     129 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
                    X.......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
  Ribosomal_60s  47 a.......aaaaaaaaaaaaaaaaaaaeekkkeeeeeE 77 
                    a       ++ aaa a+a  aa ++a++ekk++ee+++
     CDO70097.1  88 AaiaarrnQS-AAARAQARTAAIQKAKAEKKAKEEKKD 124
                    1333443233.333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2185  (0.12187); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1186.52
//
Query:       CDO70098.1  [L=813]
Description: hypothetical protein BN946_scf184806.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-68  232.6   0.4    1.5e-61  208.9   0.0    2.6  2  MAP65_ASE1      Microtubule associated protein (MAP65/ASE1 fa
  ------ inclusion threshold ------
       0.13   11.9   5.0        0.3   10.6   0.2    2.4  2  Exonuc_VII_L    Exonuclease VII, large subunit
        1.1    9.2   5.1        2.3    8.2   0.9    2.9  3  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
          5    6.9  12.3       0.26   11.1   0.6    3.4  4  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   2.4e-08   0.00011      73     227 ..      52     215 ..       3     230 .. 0.53
   2 !  208.9   0.0   3.3e-65   1.5e-61     185     499 ..     326     656 ..     278     770 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SS--TSS--HHHHHHHHHHHHHHHH.................................... CS
  MAP65_ASE1  73 ldtaleelrkekaerlaeflelleqlqklceelgeeplsllidslpkleeleslrkhleelke.................................... 135
                 +++                                                     ++++ ++                                    
  CDO70098.1  52 IES-----------------------------------------------------QINHRRKqvdewmekcaaveddclrygralgghlkasgpsvge 97 
                 222.....................................................2222222444444444444444444444444444444444444 PP

                 .......................HHHHHHHHHHHHHHHHHHHHHHHT----SHHHHHH...HCT-TTTS-....TSHHHHHHHHHHHHHHHHHHHHHHH CS
  MAP65_ASE1 136 .......................ekerRleeikelkkqIkslmeeLglepktsieedl...lkesednskklkpltretikkLkllkkeleeqkseree 208
                                        ++  +le++ +l + I sl++ Lg ++ t+   +      e+e + +  k++t+e++++L++++ + + ++++r  
  CDO70098.1  98 irkeqvlprryemitefqeklrqQYHTKLEQLLNLINRISSLSNTLGSDFYTMDILEPvvaPGEDEYDAHAHKDVTPERFSRLEKELVRGKGEVAKRLS 196
                 444444444444444444444447777777777777777777777777777764433334422355555566777777777777777777777777777 PP

                 HHHHHHHHHHHHHHHS--- CS
  MAP65_ASE1 209 klkdlrekikeLWnrLqvp 227
                 +l     +i  L + L ++
  CDO70098.1 197 QLSANFVQIDWLYTELGIT 215
                 7666666665555555444 PP

  == domain 2  score: 208.9 bits;  conditional E-value: 3.3e-65
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHTTTSSSSSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
  MAP65_ASE1 185 tretikkLkllkkeleeqksereeklkdlrekikeLWnrLqvpqeeqeafvrensslsqetidaleeEleRLeeLKkknlkklIedlRqeIeelWdkll 283
                 t+ +++  + +  ele++k+ re++++ + ++++ LW+rL v +   +afv+ n + +  ti+a+eeEleR+ eLK++ + ++Ie+ R eI++lWd ll
  CDO70098.1 326 TQALMSWAQATRLELEDIKKRREAHIQAMYDQLEALWRRLGVADADMDAFVEANRGTTDITIKAYEEELERMLELKRERMGTFIENARAEISKLWDDLL 424
                 55666666677789************************************************************************************* PP

                 --HHHHHTC-TTSTSS-.................SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGTSST....SH..H CS
  MAP65_ASE1 284 yseeerkafipvfeele.................deelLelhElelkqLkeelesnKeilelvekfeslwedeeeLEakskDpsRlnnRG....ghkiL 361
                 + eeer+ f+p+ +                    +eelL+ hE+e+ +Lkee + + ++l+ v+k+ ++ ede+eL a ++D+sRl++RG    g   L
  CDO70098.1 425 IGEEERADFAPFADGQLqsyeqpsrsltlfidehTEELLTIHEEEIRRLKEERRLKGSLLNSVKKYFDILEDEKELAAAASDQSRLLGRGprdpGR--L 521
                 ***********9987667999***************************************************************************..* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--EETTEEHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHCXXXXXXXXXXXXXX.X. CS
  MAP65_ASE1 362 LkEEKeRkriskhlPkveqeLtekveaweeefgrpFlvdGeklleiieeqweeleekyqererqksarklkkasqteeeilkgskmrtpskrrvta.p. 458
                 L+EEK+Rkr++k+ P++eq+L + + awe+e+gr Flv+G ++le + +       k++  +r  + r +    +++ +  +g+    p++ +  + + 
  CDO70098.1 522 LREEKMRKRVTKEKPRLEQDLLVSIPAWEAETGRVFLVHGVSMLELLMDMMPATD-KENSNKRT-KGRAGSVPPRAT-TPANGHHLTAPTSGHGGVrTg 617
                 ********************************************99988777766.66433222.223233444444.444566656677766666635 PP

                 .XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  MAP65_ASE1 459 .kTPsklksmskvsssssslkktpsnskslsankntalstan 499
                   TP + + +s++s+s+s  +k ++  +s+s+n   als+  
  CDO70098.1 618 vVTPAV-RPSSSLSNSQSAPNKRQRLGESTSHN--NALSSRA 656
                 59**97.66667887777734444444555544..3333222 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   6.6e-05       0.3     132     218 ..      25     137 ..      14     211 .. 0.65
   2 ?    2.6   0.8     0.018        80     147     226 ..     338     417 ..     291     541 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.6e-05
  Exonuc_VII_L 132 taaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlks...........................peellerkrqrldeleerler 201
                   t  A+l +p  + l+++l++l+++l++ i++++++++++++++ ++++                            +e++l r+ + ++e++e+l++
    CDO70098.1  25 TLHAQLGLP-PTALHDELSTLQQHLTQCIESQINHRRKQVDEWMEKCAAveddclrygralgghlkasgpsvgeirKEQVLPRRYEMITEFQEKLRQ 120
                   555555553.3567999**************************999854334555555566666666665555555577777777777777777777 PP

  Exonuc_VII_L 202 alkkqlkkkrerleelk 218
                   + +++l++  + +++++
    CDO70098.1 121 QYHTKLEQLLNLINRIS 137
                   66666555544444444 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.018
  Exonuc_VII_L 147 eqleelerrlekaikrlleekkqrleklasrl....kspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekle 226
                    +le++++r e +i+ + +    +le+l +rl    ++ ++ +e++r   d + +  e++l++ l+ krer+ ++ e+ +++++
    CDO70098.1 338 LELEDIKKRREAHIQAMYD----QLEALWRRLgvadADMDAFVEANRGTTDITIKAYEEELERMLELKRERMGTFIENARAEIS 417
                   4444444444444444443....2333333332222233333333333333333333333333333333333222222211111 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.9   0.00052       2.3      38      87 ..       3      52 ..       1      61 [. 0.52
   2 ?    1.2   0.0     0.076   3.4e+02      77     108 ..     112     143 ..     101     150 .. 0.50
   3 ?   -1.5   0.0      0.54   2.4e+03      43      78 ..     383     418 ..     329     424 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00052
  Baculo_PEP_C 38 tlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneL 87
                  t+++++ ++L++  ++ ++ll+ l+++l    t+L+d l +lq+ l++ +
    CDO70098.1  3 TTITSLLNSLHTHLQSQTQLLPTLHAQLGLPPTALHDELSTLQQHLTQCI 52
                  34444444444444445555555555555555555555555555555444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.076
  Baculo_PEP_C  77 nalqdtlrneLtnlnsiltnLlssvtNinstL 108
                    ++q++lr++  +   +l nL + +  + +tL
    CDO70098.1 112 TEFQEKLRQQYHTKLEQLLNLINRISSLSNTL 143
                   33333333333333333334444444433333 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.54
  Baculo_PEP_C  43 ietqLnalsedlksllaeldtrldtlltnLtdalna 78 
                    + +++a +e+l+++l+  ++r+ t+++n  + + +
    CDO70098.1 383 TDITIKAYEEELERMLELKRERMGTFIENARAEISK 418
                   333445555555555555555555555555555555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.9     0.048   2.2e+02      92     169 ..      36     128 ..       3     144 .. 0.45
   2 ?   -0.1   0.2      0.16     7e+02      68      97 ..     115     143 ..     108     205 .. 0.54
   3 ?   11.1   0.6   5.8e-05      0.26     101     181 ..     340     423 ..     326     428 .. 0.91
   4 ?   -1.6   0.1      0.46   2.1e+03     116     166 ..     430     480 ..     425     499 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.048
                     CCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHH..........HHHHHHHHHHHH-----..---.....--SSSHHHHHHHTS-TTSHH CS
  Apolipoprotein  92 elqeqlavyaeelrerlerhvealkarlapyveelr..........qklaerleelkeslaphaeeve.....erlssrveelrekleeqaee 169
                     +l + l++ ++ l + +e+ +   ++++++ +e+              l+ +l++ + s+ +  +e       e++++  e lr+++ +++e+
      CDO70098.1  36 ALHDELSTLQQHLTQCIESQINHRRKQVDEWMEKCAaveddclrygRALGGHLKASGPSVGEIRKEQVlprryEMITEFQEKLRQQYHTKLEQ 128
                     444444444444444444444444444444444443223222233323333333333333333222222233333333333333333333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
                     HHHHHHHCCHHHHHHHHHHHHCHHCCHHCH CS
  Apolipoprotein  68 leelrqrlapyteelrerlaadaeelqeql 97 
                      e+lrq+  + +e+l + ++ ++  l ++l
      CDO70098.1 115 QEKLRQQYHTKLEQLLNLIN-RISSLSNTL 143
                     45555555555555555444.444444444 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 5.8e-05
                     CHHHHHHHHHHHHHHHHHHCHHHHHHH...HHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXX CS
  Apolipoprotein 101 aeelrerlerhvealkarlapyveelr...qklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleel 181
                      e++++r e+h++a+ ++l++++ +l    +++++ +e+ + + +   +++ee+l++ +e  re++ + +e+ r+++ + +++l
      CDO70098.1 340 LEDIKKRREAHIQAMYDQLEALWRRLGvadADMDAFVEANRGTTDITIKAYEEELERMLELKRERMGTFIENARAEISKLWDDL 423
                     589999*******************997777999999999999999999****************************9999887 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.46
                     HHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TT CS
  Apolipoprotein 116 karlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeq 166
                     +a +ap+++   q+ ++    l   +++h+ee+ +  ++++++l+e+   +
      CDO70098.1 430 RADFAPFADGQLQSYEQPSRSLTLFIDEHTEELLTIHEEEIRRLKEERRLK 480
                     778888888888888888888888999999999888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 5497.79
//
Query:       CDO70099.1  [L=183]
Description: hypothetical protein BN946_scf184806.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-11   45.1   0.0    1.3e-11   44.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    7.7e-09   35.9   0.0    1.1e-08   35.3   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    8.1e-09   35.5   0.0    1.1e-08   35.1   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.025   14.6   0.0    1.4  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   2.8e-15   1.3e-11      26     117 .]      67     162 ..      44     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 2.8e-15
                     HHHHSTTC..EEEEEEET...TEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHH CS
  Acetyltransf_1  26 esfsleae..gllvaeed...geliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlY 112
                     e  +  ++  + +v+  d   +++++  ++++        g v++ie++aV+++ +gk lG + ++al  + ++ g++k  l ++++n   i++Y
      CDO70099.1  67 EAQRAAPKtyYPIVII-DkpsDRIVAVGTVFIERKfvrGLGCVGHIEDIAVDKSQQGKKLGLRVIQALTAISENSGCYKTILNCSDSN---IPFY 157
                     2223333322333322.23568899999999999999955899***************************99999**88789999999...**** PP

                     HHTTE CS
  Acetyltransf_1 113 eklGF 117
                     ek+GF
      CDO70099.1 158 EKCGF 162
                     ****9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.5e-12   1.1e-08       8      76 .]      91     164 ..      74     164 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2.5e-12
                     EEETTEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEEEEEEEE..THHHHHHHHHHTTEEE CS
  Acetyltransf_7   8 aeddgkivGfialslld.......aeitrlaVdpeyrgkGiGraLlea..ae...kgiileqlel..naekaikfYeklGFee 76 
                     a      vG++ +++         ++i+ +aVd++ +gk +G + ++a  a+   +g+  +   l  ++  +i+fYek+GF++
      CDO70099.1  91 A------VGTVFIERKFvrglgcvGHIEDIAVDKSQQGKKLGLRVIQAltAIsenSGCYKT--ILncSD-SNIPFYEKCGFQK 164
                     4......5655555554666655557788******************86622456887523..332333.67*********85 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.4e-12   1.1e-08      39     112 ..      86     168 ..      51     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.4e-12
  Acetyltransf_10  39 ggkivGviel.rdgs.........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgee 112
                      +++iv v+++  +++         hi+ ++Vd++++g+++g + ++a+ +  e+ g   ++ +n s+  +pfYek+GF++ ++e
       CDO70099.1  86 SDRIVAVGTVfIERKfvrglgcvgHIEDIAVDKSQQGKKLGLRVIQALTAISENSGCY-KTILNCSDSNIPFYEKCGFQKKENE 168
                      477776666665555578888888***************************9888777.********************98776 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.5e-06     0.025      21      83 ..     108     168 ..     103     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-06
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEEEEE CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfekieet 83 
                 +g +  + v+++ +++ lg r+++al++ i+e  g   + + + s++  i +yek Gf+k e++
  CDO70099.1 108 VGHIEDIAVDKSQQGKKLGLRVIQALTA-ISEnSGCYKT-ILNCSDS-NIPFYEKCGFQKKENE 168
                 5889999*******************96.6662554444.4445544.489*********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1439.31
//
Query:       CDO70100.1  [L=266]
Description: hypothetical protein BN946_scf184806.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-55  187.1   0.3    4.3e-55  186.8   0.3    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.2e-47  160.1   0.3    5.3e-47  159.8   0.3    1.1  1  adh_short     short chain dehydrogenase
    4.1e-13   49.6   0.2    7.6e-13   48.8   0.2    1.4  1  KR            KR domain
     0.0021   17.6   0.1     0.0072   15.8   0.1    1.8  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.33   11.0   0.1    1.7  2  Ldh_1_N       lactate/malate dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.3   1.2e-58   4.3e-55       1     232 [.      16     262 ..      16     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 1.2e-58
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea...kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Gaa+gIGr+iA +la+ G+++ l dl +++    + ++e+ + +g +v  +  DV++ee+v++lv+ vv+++g+l  ++ nagi+ +   p++et+ 
    CDO70100.1  16 GAAEGIGRGIALRLANDGYNLGLFDLPKAEpnlTAVANEIRTTCGVRVstVYGDVSQEEDVKRLVDIVVQELGSLYAMIANAGICIN--RPLHETTA 110
                   9***************************9954344555566666666688*************************************..******** PP

                   HHHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.. CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.. 184
                   e+ d+ ld+n++++f+  k+a   l+k+g  g++v+ ss++++r+++++++y+a+K a+ ++++++A ++g++gi+vNa +pg+ +T + +g+++  
    CDO70100.1 111 EQSDKLLDINVKGTFYSFKHASIqLIKQGkgGRLVAASSIAGKRGFAEHAMYCASKFAVRGIVQCAALDYGEHGITVNAYAPGACETSLLTGVDEyf 207
                   *********************9878888888*************************************************************99885 PP

                   .......HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 185 .......fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                          + + +e + a + l+r+++p++va+++ f++sd+a+++tGqt  vDgG
    CDO70100.1 208 serkgqpKGSYMEVFSAGSALKRIAQPRDVANLVSFFVSDDAAFVTGQTWLVDGG 262
                   544433333489999**************************************** PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.3   1.5e-50   5.3e-47       1     189 [.      10     202 ..      10     206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.5e-50
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsel 96 
                 +vv+vtGa++GIGr ia +la++G+++ +  + + e +l +va+e++ + g ++ ++ +Dv+++e+v++lv+ +v++lg+l ++++NAGi  ++p +e+
  CDO70100.1  10 RVVIVTGAAEGIGRGIALRLANDGYNLGLfdLPKAEPNLTAVANEIRTTcGVRVSTVYGDVSQEEDVKRLVDIVVQELGSLYAMIANAGICINRPLHET 108
                 59*************************9944446677899*********************************************************** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 ++e+ ++++++N++g+f   +++  +++ ++++Gr v  sS+agk ++a+ a+Y+AsK+av+g+++++a ++ ++gi+vna aPG+++T + + 
  CDO70100.1 109 TAEQSDKLLDINVKGTFYSFKHASIQLIkQGKGGRLVAASSIAGKRGFAEHAMYCASKFAVRGIVQCAALDYGEHGITVNAYAPGACETSLLTG 202
                 *********************999998868899********************************************************98765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.2   2.1e-16   7.6e-13       3     152 ..      12     165 ..      11     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.1e-16
                 EEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   3 ylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 +++tG++ g+G+ +a  la++g +  l  l +    +++ +a  +e++ + g++v++v  Dvs++++v++l++ + +e +++   i  Ag+  +++l e
  CDO70100.1  12 VIVTGAAEGIGRGIALRLANDGyNLGLFDLPKA---EPNLTAVANEIRTTcGVRVSTVYGDVSQEEDVKRLVDIVVQELGSLYAMIANAGICINRPLHE 107
                 79********************44444444444...666667788888877************************************************ PP

                 --HHHHHHHHTTTTHHHHH.HH....HHTTTS--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR 100 mtaedleqvlapKvkGawn.Lh....elledesldffvlfSSiagllgsagqanYaaa 152
                 +tae+ +++l   vkG+    +    +l+++ +   +v  SSiag  g a++a Y a 
  CDO70100.1 108 TTAEQSDKLLDINVKGTFYsFKhasiQLIKQGKGGRLVAASSIAGKRGFAEHAMYCAS 165
                 ****************9642331111566669999********************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     2e-06    0.0072       1     228 [.      12     247 ..      12     259 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 ++VtGa+  iG+ ++ +l++ gy++  +d  + + n  + ++          + v++d+ ++++++rl++ +  +   + A +++ +  +++p    e+
  CDO70100.1  12 VIVTGAAEGIGRGIALRLANDGYNLGLFDLPKAEPNLTAVANEirttcgvrvSTVYGDVSQEEDVKRLVDIVVQELGSLYAMIANAGICINRPLH--ET 108
                 68**********************9999999777777666666899*********************9998755555555556666666666555..55 PP

                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGG.TSCSS.SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHH CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevY.Gkdae.qpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege.vsrvi 186
                 +++ + +ll+   k     + ++s   +  Gk+ + +  ++ + +  ++ +  Y a+K a+  +v+ +a +yg +   ++  n y p+  e++  ++v 
  CDO70100.1 109 TAEQSDKLLDINVKGTFYSFKHASIQLIKqGKGGRlVAASSIAGKRGFAEHAMYCASKFAVRGIVQCAALDYGEH---GITVNAYAPGACETSlLTGVD 204
                 55566666655555544455555444332122222212333444445578889*******************855...556688888844444455555 PP

                 HHHHHHHHTTS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 187 palirkilegk.qevtllgdgtalRdflyveDvaeaillvleh 228
                  ++ ++  + k     +++ g+al      +Dva+++ +++  
  CDO70100.1 205 EYFSERKGQPKgSYMEVFSAGSALKRIAQPRDVANLVSFFVSD 247
                 5555554444455788888888888888888888888777766 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.2e-05      0.33       3      74 ..      12      84 ..      10      88 .. 0.72
   2 ?   -2.3   0.0       1.2   4.3e+03      30      55 ..     115     137 ..     104     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.2e-05
                EEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHH..HHHHHHHHHHHCHCCSTS-EEEEE.SSGGGGTTESEEE CS
     Ldh_1_N  3 vavvGaaGgiGqslalllankkladelaLlDiake..kleGvaldlshistflsvkvkvse.keeealkdadvvv 74
                v+v+Gaa giG  +al lan ++   l L+D++k+  +l +va ++  +    ++ v+    +ee++ + +d+vv
  CDO70100.1 12 VIVTGAAEGIGRGIALRLANDGYN--LGLFDLPKAepNLTAVANEIRTTCGVRVSTVYGDVsQEEDVKRLVDIVV 84
                789*****************9885..69****9987778888888876554444444444424444444556665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                 EEE-SSHHHHHHHHHHHHHCHCCSTS CS
     Ldh_1_N  30 aLlDiakekleGvaldlshistflsv 55 
                 +LlDi+   ++G    ++h+s+ l  
  CDO70100.1 115 KLLDIN---VKGTFYSFKHASIQLIK 137
                 678888...88888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1965.66
//
Query:       CDO70101.1  [L=2263]
Description: hypothetical protein BN946_scf184806.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-136  452.8   0.0   1.4e-135  452.0   0.0    1.4  1  DUF1744          Domain of unknown function (DUF1744)
    1.3e-77  261.3   0.0    2.2e-77  260.5   0.0    1.4  1  DNA_pol_B_exo1   DNA polymerase family B, exonuclease domain
    2.7e-11   42.9   0.3    8.9e-09   34.6   0.1    3.9  3  DNA_pol_B        DNA polymerase family B
    1.9e-07   31.0   0.2    5.7e-07   29.4   0.2    1.7  1  DNA_pol_B_exo2   Predicted 3'-5' exonuclease related to the e
     0.0031   17.5   0.0      0.018   15.0   0.0    2.3  2  RNase_H_2        RNase_H superfamily
  ------ inclusion threshold ------
      0.025   14.1   0.3      0.084   12.4   0.1    2.1  2  TF_Zn_Ribbon     TFIIB zinc-binding
       0.24   11.9   2.0       0.77   10.3   2.0    1.9  1  zf-C4pol         C4-type zinc-finger of DNA polymerase delta
        1.8    9.1   8.5        4.4    7.9   8.5    1.7  1  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> DUF1744  Domain of unknown function (DUF1744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.0   0.0  6.1e-139  1.4e-135       2     399 ..    1552    1939 ..    1551    1941 .. 0.96

  Alignments for each domain:
  == domain 1  score: 452.0 bits;  conditional E-value: 6.1e-139
     DUF1744    2 eklykeelekkeekeekkeelieypeklkfeveyvkdekkalkalsralkklkeeksgptllvlqspkelkkleskipalsefPvvklpsnkaessl 98  
                  ++ly+e+l+k+ e++  ++ +++yp++l+f+ +y++++++alka+sr+l  +++++   +++v++s+ke+++++ + p ls+fPv++++++k+ +sl
  CDO70101.1 1552 SELYAELLDKH-EHDIVSNISYSYPDHLDFTSTYHSNDATALKAISRELGLVENRS---FTVVTSSSKEQSYFDMQTPKLSKFPVLSMSKAKSPHSL 1644
                  68999999994.4445588999******************************9988...99999********************************* PP

     DUF1744   99 palgWqsvvakrlvehylklgswlaelielaryadvPlgnlesddllfliDiffaRrLkksnvvLWwsesprPDlGGlekDdklealslleelespe 195 
                  + + Wq+ va++lv++yl+lgswl+++i++a+y+dvP+g++e d++l l+D++faRrL+++++vLWws+++rPDlGG+e+D+     +++eel ++e
  CDO70101.1 1645 DVFPWQTSVAQKLVNRYLSLGSWLDRTIAMADYYDVPVGHIEGDQPLLLADVEFARRLTSQDFVLWWSPGDRPDLGGIEEDN-----RPQEELAKTE 1736
                  *********************************************************************************7.....4679****** PP

     DUF1744  196 innpgaYssvcveleirnLavntilqsalinelEgssssvafddasseeldeyekgeaessssldesalssaafrvLrslvkswlddalkgnk..la 290 
                  + +pg+Ys+vc+e+++rnLav+++l+s ++nelEgs  ++afd   s++ldey+kg+a ++ +l+es++s +af++L+slvk w+ d+++gn   +a
  CDO70101.1 1737 FVSPGCYSNVCLEITVRNLAVDAVLHSVIVNELEGSGGATAFDA--SRTLDEYSKGDAMQDLTLGESNVSPQAFSILKSLVKMWMLDKIQGNFesPA 1831
                  ************************************97666655..568****************************************999888** PP

     DUF1744  291 dllvqhlvrWvespsslLyDpaLrrlvqnlmkKvflqLlaefkrlgskvvyAdfnkillkTsKksvenayaYveyilkairskelFkflelkikkyW 387 
                  +++++h++rW++s+ s++yD +++r++++lm+K+f+q+laefkrlgs+vvyAd ++ill TsK+  ++a+aY++yi++a++s+elF+++ l++++++
  CDO70101.1 1832 TIAIDHFWRWISSTASHMYDTSIHRFIHGLMRKTFIQMLAEFKRLGSHVVYADLSRILLVTSKPP-GTAHAYATYITTAVTSHELFQHVYLHTERFY 1927
                  ****************************************************************9.******************************* PP

     DUF1744  388 dlLlwmDeaNyg 399 
                  d+L++mDeaNyg
  CDO70101.1 1928 DFLVFMDEANYG 1939
                  ***********8 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   0.0   9.9e-81   2.2e-77       2     337 .]     112     464 ..     111     464 .. 0.98

  Alignments for each domain:
  == domain 1  score: 260.5 bits;  conditional E-value: 9.9e-81
                     ECTTSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEEEEEEEECCCCEECCTSSCCHHCEEEEEESSTCHHHHHHHHHHH..... CS
  DNA_pol_B_exo1   2 teegksvcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvtkivkvelvlkkslygyekkpvpylkvsvsnpnelkkirkelsp..... 91 
                     +++++  ++++ +++pyfY+++++g+e+  ++e+l++ ye+ +  +t+  k++l+++++l+g  +    yl++ ++n+++l+ +r+ ++p     
      CDO70101.1 112 IQDDGGMFKCTLQYEPYFYIACKNGMET-TIEEWLMKRYEGMICRITRERKEDLQMPNHLMGHRRL---YLQLHFRNVSDLLTVRRDIMPlalan 202
                     6899999********************9.*************************************...************************** PP

                     ...................................................CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C CS
  DNA_pol_B_exo1  92 ...................................................leeivdvyeydvdylerflidnkivgfgwysvkkylvraegkis 135
                                                                         e i+d++eydv+y+ r+ +dn+i+++ wy +           +
      CDO70101.1 203 sakldavdayaevvnataaaatnieletewaadvdgdvsssrrpgtrdkdpREGIIDIREYDVPYYLRVAMDNDIRVGLWYAIT---------FT 288
                     ***************************************************899******************************.........99 PP

                     -.SEEEEEETTTSCEETTTCCS-EEEEEEEEEETEETTSEETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTE CS
  DNA_pol_B_exo1 136 ncdveidcdvddliakpkesepplrvlsFDIeckskkgkfpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgv 230
                       ++ ++   +++ +      ++++v++FDIe+++ ++kfpd  +  d+i++Is+++dg+g       +l+t+r ++se++edfe+tpk+ y+g+
      CDO70101.1 289 AGQPGFKQLTERVKR------ADPVVMAFDIETTKAPLKFPDQAI--DQIMMISYMVDGQG-------FLITNRDIVSEDIEDFEYTPKEGYEGP 368
                     999999998888888......************************..**************.......*************************** PP

                     .EEEEESSHHHHHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEEEEEECEEEETTSEEEEHHHHHH CS
  DNA_pol_B_exo1 231 .kvlefdsEkelLqaflefikqydPdvitgYNidnFDlpYilnRakelykvklsklgrlnkggrskvseigfskqarekvkisgrihlDlyrvvk 324
                      +v+++++E++l+++++++i++++P+v+ ++N+d+FD+p++ +Rak               +g+ +  e+gf+k++++++k++ ++h+D++r+vk
      CDO70101.1 369 fTVFNEPDEAALIRRWFSHIQDVKPTVMATFNGDFFDFPFVYARAK--------------VHGIDMFLESGFAKDSEDEYKSRTCVHMDCFRWVK 449
                     **********************************************..............*********************************** PP

                     HHSSSS..G-SHHHH CS
  DNA_pol_B_exo1 325 rklklp..sYkLnav 337
                     r+++lp  s+ L+av
      CDO70101.1 450 RDSYLPqgSQGLKAV 464
                     *************98 PP

>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.064   1.4e+02       6      51 ..     529     582 ..     525     594 .. 0.72
   2 ?    0.0   0.0      0.12   2.7e+02      61      88 ..     658     685 ..     654     699 .. 0.85
   3 !   34.6   0.1     4e-12   8.9e-09     145     456 ..     831    1179 ..     784    1181 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.064
                 HHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS..........-S----BE- CS
   DNA_pol_B   6 vledgqqirveslLlrlakeegfilpdrtekkgkeee.........gYqGatVle 51 
                 vl +g+ +  e+lL+ +a + ++i+p+r+e+ ++ +          +Y G+ V  
  CDO70101.1 529 VLRKGSGTLCETLLMVEAYRGEIIMPNRHEE-SHGNMyeghllaseTYVGGHVEA 582
                 78999999******************87666.44442345666664466666655 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.12
                 EEEEEETTHHHHHHHHTT-STTTCE-HC CS
   DNA_pol_B  61 vlvlDFaSLYPsiiqahNlcyttlvase 88 
                 +  lD a +YP+i++ + l +  +v ++
  CDO70101.1 658 IYHLDVAAMYPNIMLSNRLQPDSVVDEA 685
                 6679***********9999988887765 PP

  == domain 3  score: 34.6 bits;  conditional E-value: 4e-12
                  -HHHHHHHHHHHHHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-.... CS
   DNA_pol_B  145 defekalldkqQlalKvtaNsvYGftGvansrlpclalAasvTtiGRemLektkelvekkaellskllalpeeaeeeklkviYGDTDSvfiel.... 237 
                   +++ +l+d+ Qla K++ Ns+YG++  +  r  ++++A     +G ++++++++lve+ ++ l+                   DTD ++  l    
  CDO70101.1  831 AKKMIVLYDSLQLAHKCILNSFYGYVMRKGARWHSMEMAGITCLTGATIIQMARQLVEQIGRPLEL------------------DTDGIWCMLpgvf 909 
                  2256789***************************************************88333322..................3333333223333 PP

                  ............................S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEE........TTEEEEEEEEESSTTSE. CS
   DNA_pol_B  238 ............................kvkdveellkigkelaeevseklfkkplklefekvykkllLis........KKkYaglkvektskank. 297 
                                                 + ++  ++  e  e+v +   ++ +  e++  yk ++L s        KK+Ya +  +     ++ 
  CDO70101.1  910 penfkfklsngkaiafsypctmlnhlvhAKFTNHQYHDLDPETGEYVVH--SENSIFFELDGPYKAMILPSskeedkllKKRYAVFNDD-----GSl 999 
                  3333333333333333334455555554567888888999999999988..5667**************65444444448999877666.....433 PP

                  EEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-......GGGG-EEEEESS.CCCSSGCCSHHHHHHH CS
   DNA_pol_B  298 lliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvp......lekfvlskelskepenyksknlphlevak 388 
                   + KG ++ Rr+  +l+k   +++ e+ l        lee+ +a+ ++ ++ l+ l ++  +      +e    ++++sk+ ++y  ++   ++ a+
  CDO70101.1 1000 AELKGFEVKRRGELQLIKIFQSQIFEKFLLG----ATLEECYAAVAQVADHWLDVLFSRAEDladeelVELIAENRSMSKTLAEYGGQKSTSISTAR 1092
                  79***************************99....55666666666555555555544444411111144455678899999999888888999999 PP

                  HHHHHC.SS-.--TTCEEEEEEBETSS.....................SS-GGGTEEEH.HHHHHCCSEB-HHHHHHTTHHHHHHHH CS
   DNA_pol_B  389 rlkkrn.eea.pevgdrisYvivekkkev................kkknllaseraedp.eyvleknlpidieyYlsqllkevarll 456 
                  rl++    +     g   +++i +k   +                + k +  ++  +d+     e +  +d +yY+++l + + +l+
  CDO70101.1 1093 RLAEFLgDQMvKDKGLACKFIISAKPMGApvteravpvaifsaeeSVKRTYLRKWLKDNsLTNFELRSILDWDYYIERLGSVIQKLI 1179
                  998876434313445567777777766557888888888777765444444555555652333345577788888888888777776 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   2.5e-10   5.7e-07      35     175 ..     375     512 ..     369     513 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.5e-10
  DNA_pol_B_exo2  35 ssekelikkffegvekkkpqlV.sfngrgfDlpvleyralkhgvsapkyfdegdedrekkwnnylsrystrhlDLmdlls..eygaranakLdel 126
                      +e++li++ f++++  kp+++ +fng  fD+p ++ ra +hg+    ++++g    ++  ++y sr    h+D    +   +y ++ ++ L+ +
      CDO70101.1 375 PDEAALIRRWFSHIQDVKPTVMaTFNGDFFDFPFVYARAKVHGID--MFLESGF--AKDSEDEYKSRT-CVHMDCFRWVKrdSYLPQGSQGLKAV 464
                     579***************986439*******************97..5889888..455557888885.46999999996336999999999988 PP

  DNA_pol_B_exo2 127 akl.lglPGKlgvdGskVaelyqegklkeireYcetDvlnTYlvylrlel 175
                     ++  lg+   +++d  + ++ y+ ++ + +++Y  +D++ TY +y+++++
      CDO70101.1 465 TTAkLGY-DPIELD-PELMTPYAMEQPQVLAQYSVSDAVATYYLYMKYVH 512
                     6541333.234444.468999**************************975 PP

>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     8e-06     0.018      39     117 ..     373     472 ..     360     480 .. 0.80
   2 ?   -3.7   0.0       4.8   1.1e+04      89     116 ..    1576    1601 ..    1564    1605 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8e-06
   RNase_H_2  39 eepeeekailelflellekk.kalvtfngksFDvpflkrlfkkyklde................eefrhiDLlkelrkkkl...esysLksveke.lgi 116
                 +ep+e + i + f ++   k + + tfng  FD+pf+  ++k + +d                 +   h+D ++++++  +    s +Lk+v ++ lg+
  CDO70101.1 373 NEPDEAALIRRWFSHIQDVKpTVMATFNGDFFDFPFVYARAKVHGIDMflesgfakdsedeyksRTCVHMDCFRWVKRDSYlpqGSQGLKAVTTAkLGY 471
                 6788899999988444443336689****************777777778889999998888767779********999999995559*9998877777 PP

   RNase_H_2 117 e 117
                 +
  CDO70101.1 472 D 472
                 5 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.8
   RNase_H_2   89 rhiDLlkelrkkklesysLksvekelgi 116 
                  +h+D    +++++++   Lk++ +elg 
  CDO70101.1 1576 DHLDFTSTYHSNDATA--LKAISRELGL 1601
                  5677777777666666..7777777776 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.1     7e+03      13      21 ..     948     956 ..     947     956 .. 0.90
   2 ?   12.4   0.1   3.8e-05     0.084       2      32 ..    2168    2213 ..    2167    2217 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
                   EETSTTCEE CS
  TF_Zn_Ribbon  13 eDpergelv 21 
                   +Dpe+ge+v
    CDO70101.1 948 LDPETGEYV 956
                   59*****98 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.8e-05
                    EETTTTCEEC...............HEETSTTCEEESSSSBEEEEC CS
  TF_Zn_Ribbon    2 kCPnCgstnl...............veDpergelvCtdCGlVledn 32  
                    +C  Cg++++               ++ +++ +l+C++CG V  dn
    CDO70101.1 2168 VCARCGGEYDragiefalmrmvgdyERRFAQQDLRCSRCGQVRSDN 2213
                    6999999996799999999999998999**************9998 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.0   0.00034      0.77       9      58 ..    2156    2219 ..    2137    2224 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00034
    zf-C4pol    9 k.........kalCkkCrsdkqes..llkllsrlkelekklneletvCqsCaqgsl...eeevk 58  
                            + +C++C  + ++    ++l++ + + e+++++ +  C +C q+     +++  
  CDO70101.1 2156 PsprdpaagaRWVCARCGGEYDRAgiEFALMRMVGDYERRFAQQDLRCSRCGQVRSdnvSKHCA 2219
                  034444455589*****86666666789***********************4443311133333 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.5     0.002       4.4       3      50 ..       3      49 ..       1      72 [. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
  FoP_duplication  3 ggrrarrggggrggrrgrgrggrggrggrgrgrggrggrkkkkpltke 50
                     +g++ + ++ggrg +r + rg+   rggrgrgrg++g   ++ p+ ++
       CDO70101.1  3 RGSSSNFKRGGRGSSRFGYRGNTSFRGGRGRGRGRGGA-PSDAPPQRD 49
                     67788889999999999999999999999999999998.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.52
# Mc/sec: 13072.60
//
Query:       CDO70102.1  [L=691]
Description: hypothetical protein BN946_scf184806.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-07   29.3   1.0    5.9e-07   29.3   1.0    3.9  4  PHD       PHD-finger


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   6.1      0.27   4.9e+03       2      31 ..      48      77 ..      45      90 .. 0.73
   2 !   29.3   1.0   3.3e-11   5.9e-07       1      36 [.     122     159 ..     122     165 .. 0.87
   3 ?   -0.6   0.5     0.073   1.3e+03      12      27 ..     193     208 ..     190     209 .. 0.79
   4 ?   -2.6   1.0       0.3   5.4e+03      17      22 ..     348     353 ..     341     360 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.27
                BTTTTSTTSTTSCEEEETTTSCEEETTTSS CS
         PHD  2 CavCkkksdeeeelvqCdgCkrwfHqkClk 31
                C  C ++s  +     C  C+ ++H++  +
  CDO70102.1 48 CLTCARASPSSTPRGICSACSIACHTDHEQ 77
                7888886666777778******99987555 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 3.3e-11
                 SBTTTTS...TTSTTSCEEEETTTSCEEETTTSSSTHSH CS
         PHD   1 rCavCkk...ksdeeeelvqCdgCkrwfHqkClkpples 36 
                 +C  C++   +++e e+++qC  C++wfH +Cl++ +++
  CDO70102.1 122 FC-RCGRpydAQKERETMIQCLACEDWFHESCLNLRERP 159
                 58.89998987888********************99875 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.073
                 TSCEEEETTTSCEEET CS
         PHD  12 eeelvqCdgCkrwfHq 27 
                 + + + C gC    H 
  CDO70102.1 193 DYDALICGGCVCQIHA 208
                 567899****998885 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.3
                 EETTTS CS
         PHD  17 qCdgCk 22 
                  C++C+
  CDO70102.1 348 HCKNCH 353
                 344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 4240.60
//
Query:       CDO70103.1  [L=592]
Description: hypothetical protein BN946_scf184806.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-211  703.0   0.1   2.1e-211  702.8   0.1    1.0  1  Hydantoinase_B  Hydantoinase B/oxoprolinase


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  702.8   0.1  1.2e-215  2.1e-211       1     516 []      13     558 ..      13     558 .. 0.97

  Alignments for each domain:
  == domain 1  score: 702.8 bits;  conditional E-value: 1.2e-215
  Hydantoinase_B   1 DpitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekfegelkpGDvlltNdPyaggtH 95 
                     Dpi l +f+nr+ms+ae mgr lq+taiS+nikerlDfscalf +dg+lva+ap ip+hlgsms+avk++++ + ++lkpGDvl+tN+P agg+H
      CDO70103.1  13 DPILLTLFANRFMSVAEAMGRSLQQTAISTNIKERLDFSCALFAPDGDLVANAPFIPIHLGSMSFAVKYQMQLHGKTLKPGDVLMTNSPHAGGSH 107
                     9**********************************************************************999889****************** PP

  Hydantoinase_B  96 lpDitvitPvfhege..lvffvasraHhaDiGGitpGsmppdateifeEGlrippvklveege.leedvlelllanv.........RtpednlgD 178
                     lpDit+i+Pvf  +   ++ff+asr+HhaDiGGi pGsmpp++t+ifeEG+ i ++klv+eg+ +++++++++ +++         R+++d+++D
      CDO70103.1 108 LPDITIISPVFDAKAenIIFFTASRGHHADIGGILPGSMPPTSTTIFEEGANILSFKLVSEGVfDHDGLVDYMITKPaqypgssgcRNLRDVESD 202
                     ***********655489*********************************************************9*9****************** PP

  Hydantoinase_B 179 lkAqiaanqvgerrlkelieeyGldtveaamdeildnaeravraalaelpd....gtyeaedylddgipikvtvtidgde..atvDftgtspqvk 267
                     lkAq+aan++g++++++++++yGl tv+++m +i +nae +vr++l+++++    + ++a dylddg+pi+++v i++++  a++Df+gt+ +++
      CDO70103.1 203 LKAQVAANHKGIQLIQQIVDDYGLGTVQEYMYHIRANAESSVRNLLRDVAKragtNILQAVDYLDDGSPIQLKVVINEQDgsAELDFEGTGCEIR 297
                     ***********************************************999999887899***************99888889************* PP

  Hydantoinase_B 268 gniNaplavtlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqgtmnnltfg 362
                     gn+N+p +v++saviy++r+++d diplN+Gcl pi+vk+p+gsll+ps++aav+ggnv+tsqr+vdvvlka++      ++Aasqg++nnltfg
      CDO70103.1 298 GNLNSPISVVHSAVIYCMRAMLDMDIPLNAGCLVPITVKIPDGSLLKPSRTAAVCGGNVLTSQRIVDVVLKAFH------ACAASQGCTNNLTFG 386
                     **************************************************************************......**************7 PP

  Hydantoinase_B 363 gvderg.....geffgyyetiagGaGArpgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGdGvvreieflepevtvs 452
                        +++        +gyyetiagG+GA+pg++G+s+vh+h+tntr+ dvEilErryPv+v++f++r++sgG+Gk+rGGdGvvre+eflep ++vs
      CDO70103.1 387 SGGKDKdgnnvV-GYGYYETIAGGSGAGPGWHGTSGVHTHITNTRIGDVEILERRYPVIVHQFGIREGSGGRGKWRGGDGVVRELEFLEP-LQVS 479
                     544444567743.459*************************************************************************9.**** PP

  Hydantoinase_B 453 ilserrvfapwGlaGGepGargrvvlnllvr..................geeenlggkatvelkagdvlvietpGGGGyGdp 516
                     ilserr+ +p+G++GGepGa+gr   n++++                   +++n+ggkatv + +gd+l ietpG G +G p
      CDO70103.1 480 ILSERRTRQPYGMEGGEPGAMGR---NTWIKqpresdgdlpedpnespkPRKINIGGKATVFMGKGDRLLIETPGAGAWGAP 558
                     ***********************...88888888899999999999999*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3827.73
//
Query:       CDO70104.1  [L=268]
Description: hypothetical protein BN946_scf184806.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1809.67
//
Query:       CDO70105.1  [L=244]
Description: hypothetical protein BN946_scf184806.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-12   45.2   0.2      1e-11   45.0   0.2    1.1  1  Tetraspanin      Tetraspanin family
    0.00076   18.7   8.3     0.0011   18.2   8.3    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein
     0.0094   16.2  10.0      0.023   15.0   8.9    2.0  2  DUF4064          Protein of unknown function (DUF4064)
  ------ inclusion threshold ------
      0.021   14.2   0.5      0.039   13.3   0.5    1.4  1  TssN             Type VI secretion system, TssN
      0.027   13.5   2.8      0.035   13.2   2.8    1.1  1  7TM_GPCR_Srh     Serpentine type 7TM GPCR chemoreceptor Srh
      0.032   13.7   0.5      0.043   13.3   0.5    1.3  1  DUF1129          Protein of unknown function (DUF1129)
      0.053   12.0   0.7      0.065   11.7   0.7    1.1  1  Cellulose_synt   Cellulose synthase
      0.071   13.4   5.1       0.14   12.4   5.1    1.5  1  TctB             Tripartite tricarboxylate transporter TctB f
      0.096   12.1   7.4       0.25   10.7   0.5    2.2  2  TMEM43           Transmembrane protein 43
       0.11   12.4   7.0       0.21   11.4   7.0    1.4  1  TatC             Sec-independent protein translocase protein 
        0.4   10.8  12.7      0.061   13.4   7.2    2.3  2  DUF1146          Protein of unknown function (DUF1146)
          2    7.1   5.0       0.55    8.9   2.1    1.5  1  DUF2207          Predicted membrane protein (DUF2207)
          3    7.6   7.8        6.8    6.4   7.3    1.8  1  Claudin_2        PMP-22/EMP/MP20/Claudin tight junction
        5.8    6.8  11.2         29    4.6  11.2    2.0  1  DUF2721          Protein of unknown function (DUF2721)
        9.5    6.2   8.2       0.96    9.4   0.6    2.7  2  Herpes_US9       Alphaherpesvirus tegument protein US9
        9.7    5.8  15.3        2.2    7.8   5.4    2.2  2  SUR7             SUR7/PalI family


Domain annotation for each model (and alignments):
>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.2     9e-15     1e-11       2     107 ..      12     135 ..      11     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 9e-15
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXX.....................XXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   2 kyllfffnllfwligivllavGvwlrl...........khaeaalacllsesaedpailaillivvGv....llfllgflGcigalkenkcllltfsl 84 
                  +  +f+f+++ + ++ +  ++G w ++           +++++a+ +++ e+a+ ++      i++G+    +++l++f+G+ig++ +n+ +   +s+
   CDO70105.1  12 RAGVFIFSFISFALATLTAGLG-WFLFhlveanklsevEDKLSADDKTTFEQAVRTHKW---AIILGSliftFIALVSFFGFIGSIVRNRRMVKAYSI 105
                  5679******************.6656799***99766444444444444444444444...6777775666899*********************** PP

                  XXXXXXXXX.XXXXXXXX--HHH....... CS
                  xxxxxxxxx.xxxxxxxxxxxxx......x RF
  Tetraspanin  85 lllvlflle.laagilgfvfsdk......a 107
                  ++++ fll  la g+l++v+ ++       
   CDO70105.1 106 MVIISFLLGsLASGFLLYVNWSHkpfcvkI 135
                  ***999886156666999888774444440 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   8.3   9.4e-07    0.0011     208     287 ..      18     120 ..       4     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.4e-07
  ABC2_membrane_3 208 skilgdflvyllqlllilllafgl.......................gipfgnlglllllfllfglayialgyllsslfkns..etaqilifiv 276
                       ++++ +l+ l+  l ++  +f+l                       ++    + ++l  +++ ++a+++++ +++s+++n   ++a+++++i+
       CDO70105.1  18 FSFISFALATLTAGLGWF--LFHLveanklsevedklsaddkttfeqAVRTHKWAIILGSLIFTFIALVSFFGFIGSIVRNRrmVKAYSIMVII 109
                      233344444444444444..5555667899***********99888888888999999999999***************999667789999999 PP

  ABC2_membrane_3 277 illlsgffggl 287
                      ++ll+ +  g+
       CDO70105.1 110 SFLLGSLASGF 120
                      99544333332 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   8.9   2.1e-05     0.023       3      96 ..      13     110 ..      11     117 .. 0.64
   2 ?    1.8   0.8      0.26   2.9e+02       6      26 ..     104     124 ..      99     131 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
     DUF4064   3 kaeiiLglIGgilgillglllllflfllssgefsqelteeqalsgedasavleflstllivlgviali......aivlgivgalllkknkk.vsGilfi 94 
                  + +i+++I+++l  l ++l+ + + l+ +++ s+     ++ls++d ++++  + t  +++++++li       +++g++g+++ ++    +  i++i
  CDO70105.1  13 AGVFIFSFISFALATLTAGLGWFLFHLVEANKLSEVE---DKLSADDKTTFEQAVRTHKWAIILGSLIftfialVSFFGFIGSIVRNRRMVkAYSIMVI 108
                 5679********************9999999998877...55566666666655555555555555550000005566666666666544445555555 PP

     DUF4064  95 ia 96 
                 i+
  CDO70105.1 109 IS 110
                 55 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.26
     DUF4064   6 iiLglIGgilgillglllllf 26 
                  i+ +I++ lg l++++ll++
  CDO70105.1 104 SIMVIISFLLGSLASGFLLYV 124
                 577888998888888888887 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   3.5e-05     0.039      30      78 ..      67     119 ..      56     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
        TssN  30 kkkliiyiLlaglvlalpgllgf....lknefvpygyillqilylllGilhly 78 
                 +k +ii   l+  ++al++++gf    ++n  +   y +++i+++llG+l   
  CDO70105.1  67 HKWAIILGSLIFTFIALVSFFGFigsiVRNRRMVKAYSIMVIISFLLGSLASG 119
                 45555555556667899999999888999*******************99765 PP

>> 7TM_GPCR_Srh  Serpentine type 7TM GPCR chemoreceptor Srh
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.8   3.1e-05     0.035     179     298 ..       9     134 ..       1     137 [. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
  7TM_GPCR_Srh 179 laldst.lllivivllllllliqilffvvlli.yyllkskkkslSk...kTr.klqkkflialiiQvaipllviliPliyllfsilfgyynqalnnl 269
                   + +    +++ +i ++l++l++ +  f+++l+  + l++++ +lS+   +T+ +  ++  +a+i+  +i+ ++ l+ ++ ++ si+ +    ++  +
    CDO70105.1   9 IPVRAGvFIFSFISFALATLTAGLGWFLFHLVeANKLSEVEDKLSAddkTTFeQAVRTHKWAIILGSLIFTFIALVSFFGFIGSIVRNRRMVKAYSI 105
                   4443332344444444444444444444444415555556678885221344245577789************************************ PP

  7TM_GPCR_Srh 270 lliiislhGllstivmllvhkpYRkavls 298
                   ++ii  l G l++  +l+v+ + + ++++
    CDO70105.1 106 MVIISFLLGSLASGFLLYVNWSHKPFCVK 134
                   *******************9887777776 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   3.8e-05     0.043      65     129 ..      55     124 ..      19     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
     DUF1129  65 kkkkakkesk.enpwlmalDnsLlllalfallfgilalfskkkqtas....iGlitlllvalvgGlamvl 129
                 ++k+  +++  +++w ++l +  + ++ ++ +fg+++ + ++    +    + +i+ ll +l +G+++++
  CDO70105.1  55 DDKTTFEQAVrTHKWAIILGSLIFTFIALVSFFGFIGSIVRNRRMVKaysiMVIISFLLGSLASGFLLYV 124
                 3333333333345566666655566777899******99998877767788999999999*****99886 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   5.8e-05     0.065     651     716 ..      66     137 ..      57     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.8e-05
  Cellulose_synt 651 yeswgkllGklffafwvlvhlypflkGllGrrn..rtptivvvwsvllaiils..llwvri..dpfvskedg 716
                     +++w+ +lG l+f+f  lv ++ f+  ++  r   +  +i+v+ s ll ++ s  ll+v+   +pf  k dg
      CDO70105.1  66 THKWAIILGSLIFTFIALVSFFGFIGSIVRNRRmvKAYSIMVIISFLLGSLASgfLLYVNWshKPFCVKIDG 137
                     579**********************99986554126779***********9986567775422466666655 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.1   0.00013      0.14      33     116 ..      23     111 ..       5     128 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
        TctB  33 lllgvllallg..llllv...........aadgekeekearedwrkllklvlallaalllyallleplGfilata...lflllllgreerkwlkalila 115
                 ++l+ l a lg  l   +           +++ ++++k+  e+  +  k+ ++l  +++ +++l+ ++Gfi +++    ++          +  ++i++
  CDO70105.1  23 FALATLTAGLGwfL---FhlveanklsevEDKLSADDKTTFEQAVRTHKWAIILGSLIFTFIALVSFFGFIGSIVrnrRMV----K----AYSIMVIIS 110
                 33444444444323...1466999***995555555555555666666666666677777**********99998665333....2....222333333 PP

        TctB 116 v 116
                 +
  CDO70105.1 111 F 111
                 3 PP

>> TMEM43  Transmembrane protein 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.4     0.012        14     223     250 ..      12      38 ..       4      39 .. 0.83
   2 ?   10.7   0.5   0.00022      0.25     179     246 ..      61     126 ..      42     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
      TMEM43 223 glglalvalllslslsllvialawllyR 250
                 ++g+++++ ++s++l++l+ +l w+l++
  CDO70105.1  12 RAGVFIFS-FISFALATLTAGLGWFLFH 38 
                 67777755.589*************997 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
      TMEM43 179 ksenklltwllRllGfllmflglllllsplsvlvslipllgelvglglalvalllslslsllvialaw 246
                 +++ ++++w++ l++++ +f++l+ ++  +  +v+  ++++ ++ ++  ++++ll+ + s +   + w
  CDO70105.1  61 EQAVRTHKWAIILGSLIFTFIALVSFFGFIGSIVRNRRMVKAYSIMV--IISFLLGSLASGFLLYVNW 126
                 455679*****************************999987666444..5566766666666666666 PP

>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   7.0   0.00018      0.21      16     147 ..      14     158 ..       6     166 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHTHHHHHH....HCCHHHHC.C....TTS-EE..--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCTTTTS---STTTHHHHHHHH CS
        TatC  16 avaiafiitfvfaeelia....fllepleeae....eeveli..vlspleafllklkvslvaglvlasPvilyqlwafvapgLykherrlvlvfliasl 104
                 +v+i+++i+f++a+   a    fl++ +e+++    e  +l     + +e+ +   k ++++g ++   + l+ ++ f+  g   + rr+v+ + i+ +
  CDO70105.1  14 GVFIFSFISFALATLT-AglgwFLFHLVEANKlsevE-DKLSadDKTTFEQAVRTHKWAIILGSLIFTFIALVSFFGFI--GSIVRNRRMVKAYSIMVI 108
                 5556666665543333.23553444333332223321.23332234568888889999*********************..9999************** PP

                 HHHHHHHHH.HHHTHHHHHHHHHT......TTTS..STTEEHHHHHHHHHHH CS
        TatC 105 llfllGaaf.ayfvvlplvlkfll......seev..epllslseylsfvlll 147
                 + fllG +  ++++ +  + k +       +  +  +++l+l+e + +++ +
  CDO70105.1 109 ISFLLGSLAsGFLLYVNWSHKPFCvkidgkE--TctQNQLNLGEKIGLTISV 158
                 ******7651676677888887776666532..2335566666666666554 PP

>> DUF1146  Protein of unknown function (DUF1146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2       1.1   1.3e+03      33      43 ..      19      29 ..      10      31 .. 0.69
   2 ?   13.4   7.2   5.4e-05     0.061       5      48 .]      77     122 ..      73     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
     DUF1146 33 illsialGylv 43
                 ++s+al++l 
  CDO70105.1 19 SFISFALATLT 29
                38999999886 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.4e-05
     DUF1146   5 alafwaLqsl..rlekffkkpkvgqaklllillsialGylvSsFfL 48 
                  ++f aL s+   +  ++++ +  +a+ +++++s+ lG+l+S F+L
  CDO70105.1  77 IFTFIALVSFfgFIGSIVRNRRMVKAYSIMVIISFLLGSLASGFLL 122
                 567777777776689999**************************98 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.1   0.00049      0.55     356     429 ..      44     123 ..      41     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00049
     DUF2207 356 alkkwksavkkkergyfdkkgkkklkklsalglgliilglilillallllvll......lvfllilllillliaiivlll 429
                 +l+++++++ ++ +  f+++ +++++ +++ +l++++++l+ ++++++++v         ++++i++++l+ +a+++ll+
  CDO70105.1  44 KLSEVEDKLSADDKTTFEQAVRTHKWAIILGSLIFTFIALVSFFGFIGSIVRNrrmvkaYSIMVIISFLLGSLASGFLLY 123
                 5666777777799999*********9999999999999999999998887754666665555555555555555555555 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.3     0.006       6.8      76     158 ..      54     138 ..      11     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.006
   Claudin_2  76 eivsisatsllalarfvqvlliLslvlivlavvlgllallkqsvlllkaagilfllagvlgll..avvvfiesvkkvfeesfqqw 158
                  +  +  + +  ++  +++l  L +++i l+ ++g+++++ ++++++ka +i+++++ +lg l  + ++++++++k f  +++  
  CDO70105.1  54 ADDKTTFEQAVRTHKWAIILGSLIFTFIALVSFFGFIGSIVRNRRMVKAYSIMVIISFLLGSLasGFLLYVNWSHKPFCVKIDGK 138
                 444455556666777777888888999999999**********************999988773357899999988765555544 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.2     0.026        29      59     118 ..      63     123 ..      13     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.026
     DUF2721  59 Rarlirrailllvlsallvvlvvlllflsall.sldlsllaailfvlalllllvslllflr 118
                  +r  ++ai+l+ l +++++lv+++ f+++++ + ++  + +i+ +++ ll  +++ ++l+
  CDO70105.1  63 AVRTHKWAIILGSLIFTFIALVSFFGFIGSIVrNRRMVKAYSIMVIISFLLGSLASGFLLY 123
                 567889*************************99999999*********9998888888775 PP

>> Herpes_US9  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.1      0.72   8.1e+02      33      57 ..       7      29 ..       2      40 .. 0.54
   2 ?    9.4   0.6   0.00086      0.96      23      53 ..      92     121 ..      83     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.72
  Herpes_US9 33 fCvitliivllvAvlsaaFalGall 57
                fC+ +   v+++  +s a     l+
  CDO70105.1  7 FCIPVRAGVFIFSFISFAL--ATLT 29
                5555555667777666444..3333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00086
  Herpes_US9  23 sklrrRkkrtfCvitliivllvAvlsaaFal 53 
                 s +r R+      i++ii +l+  l+++F l
  CDO70105.1  92 SIVRNRRMVKAYSIMVIISFLLGSLASGF-L 121
                 66788887667779***************.4 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.3     0.044        50     149     177 ..      13      41 ..       3      60 .. 0.76
   2 ?    7.8   5.4     0.002       2.2     110     168 ..      63     120 ..      51     130 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.044
        SUR7 149 flnlllsvlsflatllaalldtllfvfvr 177
                   ++++s++sf +++l+a+l   lf +v 
  CDO70105.1  13 AGVFIFSFISFALATLTAGLGWFLFHLVE 41 
                 56799************999999999665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
        SUR7 110 nltkalfilhiialvlsfislvv..gllaicvspdnsrllsflnlllsvlsflatllaall 168
                  + +  +++++ +l+++fi+lv   g+++       +r++    +++ ++sfl+  la++ 
  CDO70105.1  63 AVRTHKWAIILGSLIFTFIALVSffGFIGS---IVRNRRMVKAYSIMVIISFLLGSLASGF 120
                 4566789999999******99864455555...477777999999********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1715.43
//
Query:       CDO70106.1  [L=258]
Description: Glycoside Hydrolase Family 12 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-36  125.7   9.4    2.8e-36  125.5   9.4    1.0  1  Glyco_hydro_12  Glycosyl hydrolase family 12


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   9.4   1.6e-40   2.8e-36       2     214 .]      46     258 .]      45     258 .] 0.89

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 1.6e-40
                     EEEEEE--TTEE.EEEEEEEEEE-SSEEEEEEEEEEEEESSGB--EEEEE-BGGGTB--TT--..--EEGGGEEEEEEEEEEEEE.-TT--EEEE CS
  Glyco_hydro_12   2 pysvennlWgsk.egsgsvavkvdgekitssgasahtswkekgypevygGeksvksysnsgva..lpvkvssvssiptevsfsid.dtnvkanva 92 
                     pys+ +  Wg++ ++sgs++ ++    ++ +  +++t+w++       gG++ vks++n +++  +++++s +ss+p++ ++s++  +++ a++a
      CDO70106.1  46 PYSLLLDQWGKDgATSGSQCANI--VSLSGNTIAWKTTWTWT------GGTG-VKSFTNVQLNqgINKQLSAISSMPSTWQWSQStSGTIVADIA 131
                     89********975799****777..488888899********......7777.9999999875338888****************8999****** PP

                     EEEEEESSTT-S--TT-EEEEEEEE.EES---SSEEEE..........EEEETTEEEEEEE.EESSSEEEEEEESS--.EEEEEEHHHHHHHHH- CS
  Glyco_hydro_12  93 ydlflaaeknqvtsigdvElmiWlarygniqPiGekie..........tavvgGetWelwlGaeaeqdvlsFvakspi.kgysfDvkdFldalts 176
                     ydlf+a+++     ++  E+miWla ++  +Pi ++ +           +++ G+tW+l++G +++++v+sF  +s + +++s+D+k Fl +lt+
      CDO70106.1 132 YDLFTANTPGG---SNVNEIMIWLANFN-AGPISSQYGsdgnpvpvasNISIAGHTWNLYSGSNGANNVFSFLPTSGMiTSFSGDIKAFLTYLTQ 222
                     *****988765...9999*******887.59**999999999999998899**********************998766**************** PP

                     SS---GGGSEE-EEEEE--B..--TT-EEEEEEEEEEE CS
  Glyco_hydro_12 177 argldaedlylislqiGtEpftgspetlkvenfsasve 214
                     + g+ + ++yl++ q+GtE  t +++tl+   +s  ++
      CDO70106.1 223 HEGVST-SQYLVTAQAGTEA-TSGSATLTTSAYSLVIN 258
                     **9975.79***********.666666**999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1729.00
//
Query:       CDO70107.1  [L=101]
Description: hypothetical protein BN946_scf184806.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-23   81.5  11.1    6.1e-23   81.3  11.1    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3  11.1   3.4e-27   6.1e-23       1      80 []      22      99 ..      22      99 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 3.4e-27
  Hydrophobin  1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80
                 Cntg +qCCns++++ ds+  ++ll+llg++++d+ + +gl+Cspi+v+gvg +ssC ++pvCC+nn+ +gl+++gC+p+
   CDO70107.1 22 CNTGAIQCCNSIESS-DSAVGSALLSLLGVVVEDVGVALGLGCSPISVIGVG-QSSCAANPVCCQNNNVGGLVSIGCVPV 99
                 ************987.655667777*************************97.9************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 733.06
//
Query:       CDO70108.1  [L=128]
Description: hypothetical protein BN946_scf184806.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-22   80.5   7.2    1.3e-22   80.2   7.2    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   7.2   7.2e-27   1.3e-22       1      80 []      48     126 ..      48     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 7.2e-27
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg++qCC+sv ka d++ +  llgllg+++++++  +g++Cspi++vg+g  s+C+ ++vCCenn+ +gli++gC+ i
   CDO70108.1  48 CSTGPIQCCQSVGKA-DDPVMGLLLGLLGIVVDGVDALLGIQCSPIKIVGLGLDSACSGNVVCCENNNIGGLISIGCIDI 126
                  9************99.556777777****************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 898.97
//
Query:       CDO70109.1  [L=110]
Description: hypothetical protein BN946_scf184806.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-24   84.6   9.5    6.6e-24   84.3   9.5    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   9.5   3.7e-28   6.6e-24       1      80 []      30     108 ..      30     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 3.7e-28
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg +qCCn+v++a++ ++ + llgllg++l d+tg +gl+Csp++vvg+g+g++C++++vCC nn+ +gli++gC pi
   CDO70109.1  30 CSTGAIQCCNTVESASS-ASGNFLLGLLGIVLGDITGLIGLNCSPLSVVGIGSGNACSANAVCCANNNVGGLISIGCLPI 108
                  9************9955.4555566******************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 813.79
//
Query:       CDO70110.1  [L=107]
Description: hypothetical protein BN946_scf184806.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-24   86.4  12.4    1.9e-24   86.1  12.4    1.1  1  Hydrophobin  Fungal hydrophobin
  ------ inclusion threshold ------
        0.5   10.3   4.4        2.2    8.3   4.4    1.9  1  Lamprin      Lamprin
        6.8    7.5   9.1        7.5    7.3   0.6    2.4  2  Toxin_12     Ion channel inhibitory toxin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1  12.4   3.1e-28   1.9e-24       1      80 []      28     105 ..      28     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 3.1e-28
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  Cntg++qCCnsv+++k+ +av++llgllgl++++++g+vg++Cs i+ vgvg +ssC+++pvCCenn+ +gli++gC+pi
   CDO70110.1  28 CNTGSIQCCNSVHDTKE-DAVSALLGLLGLDVNSISGKVGIQCSGISGVGVG-QSSCQASPVCCENNNVGGLISIGCVPI 105
                  *************9866.69******************************97.9*************************8 PP

>> Lamprin  Lamprin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.4   0.00036       2.2       1      33 [.       1      33 [.       1      96 [. 0.61

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00036
     Lamprin  1 maaalqallvlallhlatatpvvtkqkvstlst 33
                m a + al vlal  latatpv    +  t s 
  CDO70110.1  1 MFARVSALAVLALPLLATATPVRRGGNCNTGSI 33
                678999****************86666555443 PP

>> Toxin_12  Ion channel inhibitory toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.6    0.0013       7.5       4      17 ..      23      37 ..      22      39 .. 0.88
   2 ?    3.9   2.5     0.015        89       7      18 ..      80      91 ..      78      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
                TTTCB-SSTCG.B-T CS
    Toxin_12  4 gffgkCnsdkd.CCk 17
                +++g Cn+++  CC 
  CDO70110.1 23 RRGGNCNTGSIqCCN 37
                5799**********5 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.015
                CB-SSTCGB-TT CS
    Toxin_12  7 gkCnsdkdCCkg 18
                ++C  +  CC++
  CDO70110.1 80 SSCQASPVCCEN 91
                68**999***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.34s 00:00:00.94 Elapsed: 00:00:00.59
# Mc/sec: 549.76
//
Query:       CDO70111.1  [L=109]
Description: hypothetical protein BN946_scf184806.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-24   85.4   8.9    3.8e-24   85.1   8.9    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   8.9   2.1e-28   3.8e-24       1      80 []      29     107 ..      29     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 2.1e-28
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkll.gllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg++qCC+s++ka++   + +ll gllg++l+dl+  +gl+Csp++v+gvg+g++C++q+vCCenn+ +gl+++gC+pi
   CDO70111.1  29 CSTGDIQCCQSTEKAGSA--AGTLLlGLLGIVLDDLNILLGLDCSPVTVIGVGTGNACSAQTVCCENNDVGGLVSIGCVPI 107
                  9************99773..555556******************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 784.08
//
Query:       CDO70112.1  [L=119]
Description: hypothetical protein BN946_scf184806.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-24   85.5  11.8    3.6e-24   85.2  11.8    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2  11.8     2e-28   3.6e-24       1      80 []      39     117 ..      39     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 2e-28
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg +qCC+svq++k+ +a++++lgllg+++ d+tg vgl+Cspi+vvgvg+g++C++++vCC+nn+ +gl ++gC+pi
   CDO70112.1  39 CSTGAIQCCSSVQSSKS-DAITTILGLLGIVIGDITGLVGLGCSPISVVGVGSGNACSANAVCCQNNNVGGLLSIGCVPI 117
                  9************8855.79***********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 856.56
//
Query:       CDO70113.1  [L=107]
Description: hypothetical protein BN946_scf184806.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-17   63.4   2.0    2.8e-17   63.1   2.0    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   2.0   1.6e-21   2.8e-17      18      80 .]      43     105 ..      31     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.6e-21
  Hydrophobin  18 ssavkkll.gllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  s+ +++ll gllg+++++l++ +g++Cspi+v+gv+ g  C++++vCC++n+ +gli++gC+p+
   CDO70113.1  43 SDPLSTLLlGLLGIVIDGLDVVLGIQCSPISVIGVA-GGDCDANVVCCQDNNVGGLISIGCIPV 105
                  334555556*************************97.899**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 845.97
//
Query:       CDO70114.1  [L=272]
Description: hypothetical protein BN946_scf184806.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.092   11.9  20.5        0.1   11.8  20.5    1.3  1  SOG2            RAM signalling pathway protein
        2.7    6.2   9.2        3.3    5.9   9.2    1.0  1  Smg8_Smg9       Smg8_Smg9
          8    6.0   7.8        9.7    5.7   7.8    1.1  1  DUF572          Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  20.5   1.7e-05       0.1     248     359 ..     126     228 ..      12     258 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
        SOG2 248 sssgnsaspaangaqsetsersasssg.vqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsntnasastprslattpappasae 344
                 ++s++s +p++++  ++ s  +ass+  ++ss s+    +++t+++ ++++++++s++gs+ t +ss+ s+ s +s   +s+s  + +at +app+s++
  CDO70114.1 126 NPSEPSGTPPKSIVVTPVSSGAASSTTtADSSTST-LSASATTTESsSTSQNTTASGPGSS-TSSSSAASTTSDAS--ATSSSVASTSATATAPPSSTS 220
                 33333333333333333333333333322222222.1111111121122333333333332.11111111111111..122222222222222222211 PP

        SOG2 345 sfastltasrintla 359
                         s++++la
  CDO70114.1 221 G-------SSSSSLA 228
                 1.......1111111 PP

>> Smg8_Smg9  Smg8_Smg9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.2   0.00055       3.3     568     660 ..     148     242 ..     120     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00055
                 XXXXXXXXX.XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXX CS
   Smg8_Smg9 568 keeselsegessdlslaeslgeseesseeveedseessesdseseedenelviqvkerkeeskkksl..verqpstteyLpgllhtespaglLPk 660
                  ++++++ +++s ls ++   es+++s++++ +  +ss+s+s+++++ +++ +  ++ ++ s++      +++ s+   L ++l +++ ++ LP+
  CDO70114.1 148 ASSTTTADSSTSTLSASATTTESSSTSQNTTASGPGSSTSSSSAASTTSDASATSSSVASTSATATAppSSTSGSSSSSLATVLSSTTSSSALPN 242
                 3445556777888999999999999999999999999999999999999999888888777444444667789999****************995 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.8    0.0016       9.7     241     326 ..     139     229 ..      85     238 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0016
      DUF572 241 k.......esskekkkeslekklskltkkkadsslvvrKkkkeeekskeskekteeeskeseeeskkeeetsaeeekeekakkkssslsllva 326
                          +s++++++s +++ls + ++++ ss   ++++++ + s++s++++ +++++++++s++ ++tsa+++++ ++++ sss+sl ++
  CDO70114.1 139 VvtpvssgAASSTTTADSSTSTLSASATTTE-SSSTSQNTTASGPGSSTSSSSAASTTSDASATSSSVASTSATATAPPSSTSGSSSSSL-AT 229
                 1233334456667777777777777655544.4445555555546666666666666666666666666666666333334444433333.32 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 1822.92
//
Query:       CDO70115.1  [L=556]
Description: hypothetical protein BN946_scf184806.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3845.61
//
Query:       CDO70116.1  [L=573]
Description: hypothetical protein BN946_scf184806.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3795.82
//
Query:       CDO70117.1  [L=660]
Description: hypothetical protein BN946_scf184783.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4510.34
//
Query:       CDO70118.1  [L=484]
Description: hypothetical protein BN946_scf184783.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3249.27
//
Query:       CDO70119.1  [L=539]
Description: hypothetical protein BN946_scf184783.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.071   12.9   0.0    2.1  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     4e-06     0.071       3      63 ..      11      74 ..       9      81 .. 0.79
   2 ?   -1.8   0.0      0.16   2.9e+03       7      21 ..     394     408 ..     393     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4e-06
                EESETTTSSHHHHHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESS.HHHHHHHHHHHTTEE CS
       RRM_1  3 VgnLppdvteeeLkelFskfGpiksiklvrd..etgkskgfafVeFes.kedAekAlealngkk 63
                +++L+p +t ++L + ++ fG +ks++ v    + g++++fa+ + e+ k   +++++ l g +
  CDO70119.1 11 ISGLTPAITAKDLNDRLGSFGTVKSLDGVGMldAVGQPRKFAYATLETtKAKLARCMNLLSGVT 74
                89************************98877779999999999998752455666666666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.16
                 TTTSSHHHHHHHHHT CS
       RRM_1   7 ppdvteeeLkelFsk 21 
                 p+ + + +Lk+lF +
  CDO70119.1 394 PQGAQKTKLKDLFAP 408
                 67888999*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3561.31
//
Query:       CDO70120.1  [L=278]
Description: hypothetical protein BN946_scf184783.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.035   14.3   0.0       0.14   12.4   0.0    2.0  2  zf-C2H2_assoc3  Putative zinc-finger between two C2H2 zinc-fi
      0.075   13.3   1.1       0.12   12.7   0.1    1.8  2  Shisa           Wnt and FGF inhibitory regulator


Domain annotation for each model (and alignments):
>> zf-C2H2_assoc3  Putative zinc-finger between two C2H2 zinc-fingers on Patz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05      0.14       8      45 ..      54      90 ..      48     122 .. 0.76
   2 ?   -1.9   0.1      0.44   3.9e+03      38      62 ..     165     190 ..     160     209 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
  zf-C2H2_assoc3  8 igvkdGqenteKCpHleseesddSfgelSngsdLkspe 45
                    ++   Gq  ++  +Hl +++s +Sfg+lS gs  +++ 
      CDO70120.1 54 LCSMRGQ-RARDTSHLVQRQSVQSFGNLSGGSTDRTTS 90
                    5777899.788899****************99777665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
  zf-C2H2_assoc3  38 gsdLkspeKqd.cNGasacdlvvpek 62 
                     +sd  +p K+      +a +l +pe+
      CDO70120.1 165 TSDFSTPPKSPvVPRKPAFALLSPEE 190
                     55666666554222223444444443 PP

>> Shisa  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.3e-05      0.12      61     127 ..      13      76 ..       3     123 .. 0.56
   2 ?   -1.3   0.2      0.25   2.3e+03     144     155 ..     194     205 ..     141     228 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
       Shisa  61 lktgreekekqlgsalevpkdiyvpvlivktifivfvivgvvvivcccgclkkkqrekr..pgrenlss 127
                   tg+ +   ++  a++v+  ++v + +v++  ++++ v v++++c+c+   +  r+ +   +r++++s
  CDO70120.1  13 EATGT-N-AASSMGATRVS--AGVIIGLVVSS-VAIISVAVLAAICLCSMRGQRARDTShlVQRQSVQS 76 
                 33333.2.22233455666..55666555443.455555567777776663333333333344444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
       Shisa 144 tvvhsrysepqq 155
                 + v+s+ s   +
  CDO70120.1 194 RKVDSPRSAKEN 205
                 223333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1892.22
//
Query:       CDO70121.1  [L=125]
Description: hypothetical protein BN946_scf184783.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-18   65.0   0.0      1e-17   64.5   0.0    1.2  1  Peptidase_M28  Peptidase family M28
     0.0039   16.9   0.0     0.0054   16.4   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   1.2e-21     1e-17       1      89 [.      37     124 ..      37     125 .] 0.89

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.2e-21
                    EEEEEESTTCE...SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH.GGCCSSEEEEEEEESSCSGSSHHHHHHHHHHCCCT CS
  Peptidase_M28   1 Nviatlegkat...devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa.sgsrpkrgvrflffdaEEagllGSkafakakpelk 89 
                    N+i++++ +++   ++ +l+++H+Ds+    +p   GA D+A +v+++Le +rvl++  g +pk+ ++flf++aEE    GS+ + +++p++k
     CDO70121.1  37 NIIVRVSDGTEkgkEHAVLVNSHLDSTLP--SP---GAADDALSVGVMLECIRVLVNtPGWEPKHAIIFLFNNAEESLQDGSQLYSTQHPTAK 124
                    8999997666668466************9..**...********************9877899***********************8777554 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     6e-07    0.0054      33      79 ..      67     114 ..      55     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6e-07
                    TTTTTTHHHHHHHHHHHHHHHHH.TTT-SSEEEEEEESTTSSTTTHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  33 rGaddmkggvlaalealralkde.gikpkgtivllfqpdEEggrgGak 79 
                    +Ga+d+  +v  +le +r l  + g +pk+ i +lf  +EE+  +G++
     CDO70121.1  67 PGAADDALSVGVMLECIRVLVNTpGWEPKHAIIFLFNNAEESLQDGSQ 114
                    7******************98885777888***********7668875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 855.80
//
Query:       CDO70122.1  [L=559]
Description: hypothetical protein BN946_scf184783.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 3542.06
//
Query:       CDO70123.1  [L=508]
Description: hypothetical protein BN946_scf184783.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-15   57.1   0.4      7e-15   55.2   0.4    1.8  1  Asp       Eukaryotic aspartyl protease
  ------ inclusion threshold ------
       0.04   13.7   0.2       0.17   11.7   0.2    2.0  1  TAXi_C    Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.4   7.8e-19     7e-15      55     307 ..      97     393 ..      60     396 .. 0.79

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 7.8e-19
                 EEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHTTSSSSEEEE-S.........-GGGSCGG..........SCCHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxx..........xxxxxxxxxxxxx RF
         Asp  55 kngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgstflaakfdGiLGlg.........fkeisvee..........atpvfdnlvsqgl 134
                 +++ +++  Y dg+++G+++    ++g+ t+  q+f ++t  +g   l+   dGiLG++         ++e    +           +p+++ l+sq+ 
  CDO70123.1  97 TTNDHAKAVYVDGEADGVIAFADLQLGEFTISSQAFLNVTDITG---LDNFEDGILGVAndlsvieeaLSE----SslgeaagerlGKPPMQALFSQRT 188
                 567788899********************************999...67779*******776664444344....155558888898999********* PP

                 SSSSEEEEEE-S....TTSSEEEEEESSEEGGGEEEEEEEEEESS......TSSTEEEEEEEEETTEEE.........EEEEEEEEEEETTCSSEEEEH CS
                 xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx RF
         Asp 135 ikepvfsvylnr....eeeeggeivfGgvDeskykGsltyvpvts......kgywqielesvtvggktv.........lcssgcqailDtGTsllalpt 214
                   +p f v l+r     + + g  + G  D +k++  l+++++t        g+w++ +++++v+g+ +           s++++a   t   + +lp 
  CDO70123.1 189 DLSPNFDVQLSRfsevGDVTPGIFLIGDHD-TKFQEVLNATQLTLnqnahgGGVWSAAMDNMNVNGQPFffnqtilvdQASDKVAAAFSTDSPFSMLPP 286
                 ***********8766545566666677666.68999999999887778888889************998777777766566777777889999999*** PP

                 HHHHHHHHHHTTEEEET..TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGE........EEE.SSSTTSEEEESE......EECCTSSSEEEEHHHH CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxx.xxxxxxxxxxxx......xxxxxxxxxxxxxxxx RF
         Asp 215 sivekiakaigakkses..egeyvvdCdslsslpdisftiggakitvpvselv........lke.eeseesqCilgl......vseeegdlwiLGdvFl 296
                  +v++i + i ++ +++     +++ C++   ++++sf++ g+++ v + +l           + + ++++ C+          ++  g + +LGd Fl
  CDO70123.1 287 PAVDAIYSTIPGAMKKTqdDLVWFIPCNA---TTNVSFVFAGQEFFVHPLDLStpvitqvpATNgTMQNATVCVNTYqassqmPNQFAGFSLVLGDAFL 382
                 *********9887666611456889***7...8999****9****99988876222222121221223446777777776532222345578******* PP

                 TTEEEEEETTT CS
                 xxxxxxxxxxx RF
         Asp 297 rsayvvfdldn 307
                 r++y+ f+l+ 
  CDO70123.1 383 RNVYISFNLAS 393
                 *******9875 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.9e-05      0.17       7     155 ..     247     394 ..     242     395 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                 EEEEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG...GE---TT-S-EEETTS......-S----EEEEESSS-EE CS
      TAXi_C   7 kgisvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaekvkrvaavkpfelCynsselgstragpavPtitlvleggaew 105
                  +++vng++  ++++ l  +++ +  +  st +p+ +l++++ +a+ + +  ++++++         f  C  ++++    ag+++    l l      
  CDO70123.1 247 DNMNVNGQPFFFNQTILVDQASDKVAAAFSTDSPFSMLPPPAVDAIYSTIPGAMKKTQ----DDLVWFIPCNATTNVSFVFAGQEFFVHPLDLSTPVIT 341
                 6799************96699999******************9999999999999985....3445555666666655444444444444555544667 PP

                 EE-GGGGEEE-SSSEEEE-EEE-.....-S--SSSEEE-HHHHBTS-EEEETTTT CS
      TAXi_C 106 tisgenllvkveggvvClafves.....gvagesavviGglqlednllvFDleks 155
                 +++++n  ++  + +vC+  ++      ++    + v+G + l+++++ F+l++s
  CDO70123.1 342 QVPATNGTMQ--NATVCVNTYQAssqmpNQFAGFSLVLGDAFLRNVYISFNLASS 394
                 7777777666..6788888888777665555666789999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3446.37
//
Query:       CDO70124.1  [L=410]
Description: hypothetical protein BN946_scf184783.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-16   59.2   0.3    4.3e-15   55.8   0.3    2.0  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.3   2.4e-19   4.3e-15      99     348 ..      54     334 ..      15     335 .. 0.72

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 2.4e-19
                    CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEE.CCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEE..EEEEEEEEE CS
  FAD_binding_3  99 vtvypqteleriLvehaeerglqvrfktevesleq.deegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetv..yeagvldvl 191
                    + ++   ++ r+L++h ++  +++  k++++s +q d ++ +++++  ++g+    +++ l+GaDG++S++r+    e+ +  +    + +  ++l
     CDO70124.1  54 MIAFHRADFHRVLLNH-VSSRCRTFTKKRLVSYQQmDSQSPDSVALHFQDGTS--ATCDVLIGADGVKSATRRIFVEELASMARAkgCPNDAQKIL 146
                    5566677899******.666677777788777776366677777777777776..88**************9988777544443300222222222 PP

                    EEC-SCCCTTC.....CEEEEECCTTEE....................EEEECCE.TEEEEEEEEECCE-GGGS..CCCHHHHHHHHHHHHHHTT. CS
  FAD_binding_3 192 fdadlsdivep.....lvlilsaesrgv....................mviPlen.tlerfyvqvearaekeer..sekfteeevkarlreivge. 258
                     d   +++          +i+s++ r +                    +v P  +  l +f   ++ar+++e +  +++  +++++++l +++++ 
     CDO70124.1 147 -DLGSPRW--SgtlayRAIIPSQKLRTLlphhrvlenpvvyfgadsqlTVYPIARgSLINFA-AMRARYDREYTyfDQPWVQDVAVEELLNEFDKw 238
                    .3333333..14588767777777777789999999999999******89998885555443.344444444444567777777777777777651 PP

                    ...SSCEE.EEEEEEEEEEEEEE.ESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-.GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 259 ...ktldv.eieevsawtvaqrv.aekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAk.eelLdtYeeerravaqavvdf 348
                       +++   +ie+v++w +++ +   ++ +  v l GDAaH++ P +G G   ai+Da+ La+ La   +  A  ++ L +Y+  rr++aq+v d+
     CDO70124.1 239 epeAQALFkSIERVNRWAIHTTLpLPSFVSRHVALLGDAAHAMMPYQGAGAGQAIEDAYVLASLLADSRTTLATlDRALHAYDIVRRPFAQRVQDA 334
                    111333334799999***99998345677779***********************************99988874678**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2784.11
//
Query:       CDO70125.1  [L=66]
Description: hypothetical protein BN946_scf184783.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                       94  (0.0052429); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 471.56
//
Query:       CDO70126.1  [L=800]
Description: hypothetical protein BN946_scf184783.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.084   11.4   0.1       0.12   10.8   0.1    1.1  1  Proteasom_PSMB  Proteasome non-ATPase 26S subunit
      0.086   12.2   0.5       0.13   11.6   0.5    1.2  1  DUF2353         Uncharacterized coiled-coil protein (DUF2353)


Domain annotation for each model (and alignments):
>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.3e-05      0.12     154     188 ..     281     315 ..     261     342 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.3e-05
  Proteasom_PSMB 154 qeagleelkskLkallkrndivRariYelavelak 188
                     q+a   +l+ +L++++++ d+ Rar+Yela++l  
      CDO70126.1 281 QKAEYTQLHRDLQNVTQERDMYRARAYELAMRLDD 315
                     67788999**********************99865 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   1.4e-05      0.13      12      74 ..     286     348 ..     278     361 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.4e-05
     DUF2353  12 liLskeLekcrqerdqyklmaeqLqerlsalkkqleeekakaadlkeekekekklsqlleesr 74 
                 + L+++L+++ qerd y+++a +L +rl+   +  ++++ + +++++e ++ ++ ++ le  r
  CDO70126.1 286 TQLHRDLQNVTQERDMYRARAYELAMRLDDCYTAHAQTSCTVERTQRELTEVRAAIADLEAER 348
                 5699************************99877777776666666655554444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 4787.04
//
Query:       CDO70127.1  [L=438]
Description: hypothetical protein BN946_scf184783.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-13   49.3   0.0    4.6e-13   48.4   0.0    1.4  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.6e-17   4.6e-13      15      48 .]      13      50 ..      12      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.6e-17
      SRF-TF 15 RrnGLfKKAsELsvLcgvevavvvf....spngklytf 48
                R+nGLfKKA+EL vLc+v+vav++f    +++ kly++
  CDO70127.1 13 RKNGLFKKAYELGVLCSVDVAVIIFeerpGHHAKLYQY 50
                9************************6655569999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 2483.82
//
Query:       CDO70128.1  [L=507]
Description: hypothetical protein BN946_scf184783.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-27   94.9   0.0    8.9e-27   94.4   0.0    1.2  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0     5e-31   8.9e-27      63     383 .]     143     449 ..     108     449 .. 0.88

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 5e-31
                 ...--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHTTSS--.TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHH CS
  His_Phos_2  63 eklqlilkwggelthaGrkqaeelGrqfrqrYplgLlrlhlty.kdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldea 160
                 +  + + ++++  t++G + a++    ++q Yp +Ll++  ++  +  i+a+s +R +++A af++Gl                    +na+ +++ e 
  CDO70128.1 143 PITNETEQVEK-MTPSGGQAATAFAGVIKQTYP-QLLNNSIPPgGTFRIWAASASRDVDTANAFIQGLG-------------------NNAELVVVNEG 220
                 44444445555.9********************.999999999*************************9...................47889999998 PP

                 HHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHHHHHH CS
  His_Phos_2 161 kkklkelltegaeacpafewpikvakrvdelvkylkedmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhnrylk 259
                 +   +++lt++  +cpaf+        +  ++  ++++++ ++++r+++  pg  n++  +++ + ++c y++  + ++ +cd+++    ++l ++y +
  CDO70128.1 221 ENDSANSLTPHV-SCPAFDA-----SMGSVQSGAWQQKYTAPLVERFNSIAPGF-NFTLTDVVGMQQLCGYDTVIRNLTSFCDVFTA--DEWLSFEYAN 310
                 888888887777.*****99.....777888999*******************9.********************************..********** PP

                 HHHHHHHC........TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS............ CS
  His_Phos_2 260 dleelyklakvipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaa........... 347
                 dl ++y          g+g++++++ G +++++ l+ +  +  +         +++l+++fth +    +l+aLgl++++a + sl +           
  CDO70128.1 311 DLMYFYSI--------GYGNPIAPQLGMPWVRNALDILSTNDTQIF-------NQTLYVSFTHREEPPLILTALGLFNNSAYYPSLDVnstmptdrinh 394
                 ********........*****************9998865555555.......79*******************************99*********** PP

                 TTT..HCCCS-CT-EEEEEEEEE..................TCTTT..EEEEEEEC CS
  His_Phos_2 348 ldrlsaspelpymsqivfelyed..................ssekk..fyvrllls 383
                 ++ +++s++lp+++++ +e+ ++                  +  ++  ++vr+l++
  CDO70128.1 395 QRAWKTSKILPFLGHVGIERLQCkntsleftspssanlgaeD-VEDsgTFVRVLVN 449
                 **********************97777777777666666542.2223578887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 3033.59
//
Query:       CDO70129.1  [L=214]
Description: hypothetical protein BN946_scf184783.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-73  244.0   0.0      1e-72  243.8   0.0    1.0  1  VPS28     VPS28 protein


Domain annotation for each model (and alignments):
>> VPS28  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.0   5.6e-77     1e-72       1     189 []      26     207 ..      26     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 5.6e-77
       VPS28   1 LaelysiivtleklEkaylkdaitekeYtstcnrLlsqyktilkdeevkkefksleeFvkkykldcpaAlkRlkegvpatvehakakkskekkesaklv 99 
                 La+l+ iiv+le+lE+ay++d+i+++eY+++c+rLlsqykt+l  + v++++ s+e+F+++y++d paAl+R+++gvpat+eh    +s+++ e+ak+v
  CDO70129.1  26 LATLFGIIVALEYLERAYVRDSISASEYSPACTRLLSQYKTML--KLVNDDVPSIEQFMSRYRMDHPAALHRIQVGVPATIEH----SSEAGPETAKWV 118
                 89*****************************************..9*************************************....778999****** PP

       VPS28 100 aeatqnFITlmDalkLnlkakdqlhplLsdLveslnkleklekdfegksklvkWliklnkmkasdeLseeearqllfdlesaYkefyklL 189
                 ae+tqnFIT++DalkL ++akdqlhp+L++Lv+s+ ++ k +kd+eg+sk+v Wli+ln mkas+eL+ee+arql+fd+e+aY+ef+++L
  CDO70129.1 119 AETTQNFITFVDALKLRMRAKDQLHPILQELVTSYARF-KGSKDWEGRSKMVGWLITLNGMKASEELTEEQARQLSFDIEHAYSEFFRSL 207
                 **************************************.78**********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 1338.42
//
Query:       CDO70130.1  [L=455]
Description: hypothetical protein BN946_scf184783.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 2736.92
//
Query:       CDO70131.1  [L=149]
Description: hypothetical protein BN946_scf184783.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 937.95
//
Query:       CDO70132.1  [L=154]
Description: hypothetical protein BN946_scf184783.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1079.07
//
Query:       CDO70133.1  [L=568]
Description: hypothetical protein BN946_scf184783.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-06   27.4   6.7      0.033   14.4   0.3    4.0  4  DUF4451          Domain of unknown function (DUF4451)
  ------ inclusion threshold ------
      0.016   14.3   5.3        3.8    6.5   0.3    3.5  3  Tmemb_55A        Transmembrane protein 55A
      0.047   14.5   0.0         18    6.2   0.0    3.1  3  S8_pro-domain    Peptidase S8 pro-domain
      0.077   13.5   0.8         11    6.6   0.0    2.8  2  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
       0.17   12.2   1.2        9.6    6.6   0.1    3.1  3  Prim_Zn_Ribbon   Zinc-binding domain of primase-helicase
       0.29   11.0   6.8         17    5.4   0.4    4.2  4  PHD              PHD-finger


Domain annotation for each model (and alignments):
>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.26   7.8e+02      82     100 ..      46      64 ..      19      82 .. 0.67
   2 !    6.6   0.3    0.0028       8.5      70      98 ..      93     149 ..      50     166 .. 0.62
   3 !   14.4   0.3   1.1e-05     0.033      76     121 ..     198     238 ..     175     239 .. 0.77
   4 !    6.9   0.1    0.0024       7.1      67     103 ..     318     368 ..     284     388 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
     DUF4451  82 ekegivCpkCneiievsls 100
                  +  i+C+ C + i+++  
  CDO70133.1  46 GSGRIICETCGDAISIRDA 64 
                 566899****998887644 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0028
     DUF4451  70 l...........rskkrrkakek.................ekegivCpkCneiievs 98 
                              s krr+ak++                 e+  ++C +C ++i+++
  CDO70133.1  93 SetlsapldasqASTKRRRAKRTeeerieylrtdpyvakfEAYRVLCASCDKWIRLR 149
                 3444444444542233333333312334555555555555666666********987 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.1e-05
     DUF4451  76 rkakekekegivCpkCneiievslsknkkekkvnellayfrHfkkc 121
                  + k+ ++e ++C  C+++i+++  +n++      +  +++H  +c
  CDO70133.1 198 PNVKRFDNERVLCRVCEKWIAIETENNETA-----IKMWMQHRSEC 238
                 445555889999***********6666655.....557****9887 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0024
     DUF4451  67 Pillrskkrrkakek..............ekegivCpkCneiievslsknk 103
                 P+ + s +rr++ ++              e   ++C+ C+++i+++++++ 
  CDO70133.1 318 PTNFASDSRRRNPDQreaalradpllgevEPGRVFCKLCQKWIHLRQDSTY 368
                 44444444443333334455556666655666777*********9976554 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0025       7.4      79     117 ..      50      88 ..      47     155 .. 0.90
   2 ?    6.5   0.3    0.0013       3.8      49      93 ..     198     244 ..     160     254 .. 0.70
   3 ?    2.7   0.1     0.019        57      59      83 ..     351     382 ..     323     395 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0025
   Tmemb_55A  79 vkCevCneatpiknapagkkyvrCpcnClliCkvssqri 117
                 + Ce+C +a  i++a++g   v+      + C++ sq  
  CDO70133.1  50 IICETCGDAISIRDAASGTFTVKHWEAHRVTCQTGSQNP 88 
                 56********************99999999999999865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0013
   Tmemb_55A  49 aseesgsapvitCrvCqslidvegkleqhvvkC..evCneatpikna 93 
                  + +  +   + CrvC++ i +e+  +   +k   ++ +e  p+  +
  CDO70133.1 198 PNVKRFDNERVLCRVCEKWIAIETENNETAIKMwmQHRSECQPVSSP 244
                 445555667799*************9999999622455666666655 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.019
   Tmemb_55A  59 itCrvCqslidvegkl.......eqhvvkCev 83 
                 + C+ Cq+ i++ +         +qh vkC +
  CDO70133.1 351 VFCKLCQKWIHLRQDStycsypwQQHRVKCLQ 382
                 78*********987642233333799999976 PP

>> S8_pro-domain  Peptidase S8 pro-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022        65      41      73 ..     105     137 ..      62     139 .. 0.67
   2 ?    6.2   0.0    0.0061        18      47      77 ..     183     212 ..     173     212 .. 0.79
   3 ?   -2.3   0.0       2.6   7.8e+03      44      64 ..     322     342 ..     316     351 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
  S8_pro-domain  41 sepkkrskrslrhkreerLakdpkVkwaeqqev 73 
                     ++k+r++++++++r e L++dp V ++e  +v
     CDO70133.1 105 ASTKRRRAKRTEEERIEYLRTDPYVAKFEAYRV 137
                    33344444444344499*********9997666 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0061
  S8_pro-domain  47 skrslrhkreerLakdpkVkwaeqqevlkRv 77 
                    ++ s++++ ++++a+dp+Vk +  ++vl Rv
     CDO70133.1 183 KAHSANDR-SAVFASDPNVKRFDNERVLCRV 212
                    34455666.79****************9996 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.6
  S8_pro-domain  44 kkrskrslrhkreerLakdpk 64 
                    ++ s+r++ ++re++L++dp 
     CDO70133.1 322 ASDSRRRNPDQREAALRADPL 342
                    566777776666899999985 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0036        11       3      35 ..      47      87 ..      46     124 .. 0.81
   2 ?    4.5   0.2     0.017        52       4      36 ..     349     387 ..     348     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0036
  Zn_ribbon_recom  3 sGllrCgeCGspmtrrkrkgkr........hyYrCstyrrk 35
                     sG ++C  CG + + r + +++        h+  C+t  ++
       CDO70133.1 47 SGRIICETCGDAISIRDAASGTftvkhweaHRVTCQTGSQN 87
                     89**********98887665555666677799999887766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.017
  Zn_ribbon_recom   4 GllrCgeCGspmtrrkrk..gkr....hyYrCstyrrkg 36 
                      G ++C+ C++  + r+ +  +++    h+ +C  +++k+
       CDO70133.1 349 GRVFCKLCQKWIHLRQDStyCSYpwqqHRVKCLQRHQKH 387
                      899********9999865455558888999999988888 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0032       9.6      18      33 ..      42      56 ..      40      64 .. 0.86
   2 ?   -0.7   0.1      0.62   1.9e+03      27      33 ..     209     215 ..     204     222 .. 0.85
   3 ?    2.1   0.0      0.08   2.4e+02      23      33 ..     345     358 ..     326     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
                    TT....S-EEETTTTB CS
  Prim_Zn_Ribbon 18 ddkdgrGtwfCrqCgg 33
                    +d+ g+G  +C +C g
      CDO70133.1 42 TDEYGSGRIICETC-G 56
                    68899*********.3 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.62
                     EETTTTB CS
  Prim_Zn_Ribbon  27 fCrqCgg 33 
                      Cr+C++
      CDO70133.1 209 LCRVCEK 215
                     7****87 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.08
                     ....S-EEETTTTB CS
  Prim_Zn_Ribbon  23 r...GtwfCrqCgg 33 
                         G  fC+ C++
      CDO70133.1 345 EvepGRVFCKLCQK 358
                     2555999*****98 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.18   5.5e+02      13      24 ..      47      58 ..      38      59 .. 0.73
   2 ?    2.1   0.0      0.06   1.8e+02      15      24 ..     136     145 ..     130     148 .. 0.84
   3 ?    2.7   0.0      0.04   1.2e+02      12      25 ..     204     217 ..     197     224 .. 0.86
   4 ?    5.4   0.4    0.0056        17      16      27 ..     351     362 ..     345     377 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.18
                SCEEEETTTSCE CS
         PHD 13 eelvqCdgCkrw 24
                +  + C++C+++
  CDO70133.1 47 SGRIICETCGDA 58
                556889999875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.06
                 EEEETTTSCE CS
         PHD  15 lvqCdgCkrw 24 
                  v+C +C++w
  CDO70133.1 136 RVLCASCDKW 145
                 589******9 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.04
                 TSCEEEETTTSCEE CS
         PHD  12 eeelvqCdgCkrwf 25 
                 ++e v+C  C++w 
  CDO70133.1 204 DNERVLCRVCEKWI 217
                 788999****9995 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0056
                 EEETTTSCEEET CS
         PHD  16 vqCdgCkrwfHq 27 
                 v+C+ C++w H 
  CDO70133.1 351 VFCKLCQKWIHL 362
                 89*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3658.24
//
Query:       CDO70134.1  [L=323]
Description: hypothetical protein BN946_scf184783.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-60  204.4   0.0    2.3e-60  204.2   0.0    1.0  1  Pkinase         Protein kinase domain
    5.1e-18   65.3   0.0    6.9e-18   64.9   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    7.3e-10   39.2   0.1    4.5e-06   26.8   0.0    2.4  3  APH             Phosphotransferase enzyme family
    9.7e-05   22.0   0.1     0.0002   21.0   0.1    1.5  1  RIO1            RIO1 family
     0.0034   16.3   0.1        1.2    8.0   0.0    2.2  2  DUF1679         Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.029   14.0   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase
      0.021   13.6   0.0      0.073   11.8   0.0    1.7  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2   0.0     9e-64   2.3e-60       1     264 []      21     306 ..      21     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 9e-64
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE..EEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdely..lvleyveggeladllerkgsls 96 
                 ye ++++G G +++V+++v++++++  ++K++k   +kk k     rEikil++l   pni+rl++++++++++   l++ey+e+ + ++++    +l+
  CDO70134.1  21 YEIVRRIGGGRYSEVFEGVDSSNEDPCVIKVLKPVARKKIK-----REIKILRNLTgGPNIIRLMDTVHDEHSRSnsLIMEYIENSDWKEVYY---NLT 111
                 78999****************************99998855.....7***********************6665555*************997...5** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 e e+k+++ q+l++l+++Hs+giiHrD+Kp+Ni++d  +++l+++D+Gla+ ++ + +l+ +v+++++  PE+l ++++y+ + D+Ws G+i++ +l++
  CDO70134.1 112 EMEIKHYLFQLLTALDFVHSRGIIHRDVKPANIMFDrARRKLRLIDWGLAEFYHPGVELHIRVASRYFKGPELLvGYKHYDYALDIWSTGCIMAAMLFR 210
                 ************************************88888*********************************9************************ PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS...............................-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeasei...............................seeakdllkkllkkdpkkRltaeellqh 261
                 ++ f   ++      + dql ki+k+lg  +++   a+                                 s +a+dll+kll+ d+ +Rlta+e+l+h
  CDO70134.1 211 RENFFRGRD------NDDQLLKIIKVLGSDDFERYLAKYGlylqtyddelvqshakvpwskfvtadnrhivSTDALDLLDKLLRFDHAERLTAAEALAH 303
                 999994444......5689999999**976666665555578888899999999999****************************************** PP

                 GGG CS
     Pkinase 262 pyl 264
                 +++
  CDO70134.1 304 SFF 306
                 *98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   2.7e-21   6.9e-18       3     209 ..      23     218 ..      21     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 2.7e-21
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkkek 97 
                  + +++G G++++V+eg  +    ++e  +++K+lk  a+++    + +e+ki+++l   pni++l+  +   ++++  +++ey+++ d ++   +   
   CDO70134.1  23 IVRRIGGGRYSEVFEGVDS----SNEDPCVIKVLKPVARKK----IKREIKILRNLtGGPNIIRLMDTVHdeHSRSNSLIMEYIENSDWKEVYYN--- 109
                  6789************988....88999******9988777....99*********99************7666779***********9987655... PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslkekk.ftsksDvWsfG 192
                    lt  ++ ++ +q+  ++++++s+ ++Hrd+   N++ ++ +++ ++ D GLa+      +  ++ + ++  ++   pE l   k +  + D+Ws G
   CDO70134.1 110 --LTEMEIKHYLFQLLTALDFVHSRGIIHRDVKPANIMFDRaRRKLRLIDWGLAEFY----HPGVELHIRVASRYFkGPELLVGYKhYDYALDIWSTG 201
                  ..688888999****************************983559**********99....33344445555555439**987655499********* PP

                  HHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 193 vllwEiftlgespypgl 209
                   ++  ++   e+ ++g 
   CDO70134.1 202 CIMAAMLFRRENFFRGR 218
                  99988777666666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00018      0.46       2      84 ..      24     105 ..      23     131 .. 0.79
   2 !   26.8   0.0   1.8e-09   4.5e-06     164     226 ..     130     190 ..     112     198 .. 0.78
   3 ?   -3.5   0.1       3.2   8.1e+03     128     148 ..     273     294 ..     261     304 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
                 EEEE--.SSCEEEEEEETT.-.-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH   2 vrelsggasnrtylvttpa.g.ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 vr+++gg ++ +++ ++++   + v ++  p  a  +i re ++lr+L +  + + ++ ++   de+++  ++++ey++  +  +
  CDO70134.1  24 VRRIGGGRYSEVFEGVDSSnEdPCVIKVLKPV-ARKKIKREIKILRNLTGG-PNIIRLMDT-VHDEHSRSNSLIMEYIENSDWKE 105
                 7999**********99998646**********.****************99.557777773.44566666999***999877666 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.8e-09
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHH.CSCHCCCHCHHHHHH CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrs.wtseldpeflaallr 226
                  +++++H+D +p N+++d +  ++  +iD+++a   +p ++l + ++s +    +pe+l ++ +
  CDO70134.1 130 HSRGIIHRDVKPANIMFDRARRKL-RLIDWGLAEFYHPGVELHIRVASrYF--KGPELLVGYKH 190
                 4799**************444444.69***************776645344..77777777766 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.2
                 HHHCHHHCCCGCCTCC.HHHHH CS
         APH 128 qlesatarllaselld.lleel 148
                  ++s  a +l  +ll  + +e+
  CDO70134.1 273 HIVSTDALDLLDKLLRfDHAER 294
                 4444433222222222222222 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   7.9e-08    0.0002      78     150 ..      88     159 ..      52     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.9e-08
                 EETTEEEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT..EEEE--GT CS
        RIO1  78 lkrhvlvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded..kvviIDvs 150
                  +++ l+me+i++ +++ +  + +e   e+++++ ++l +   +++  g++H D+   N+++d+   k+ +ID++
  CDO70134.1  88 SRSNSLIMEYIENSDWKEVYYNLTE--MEIKHYLFQLLTA-LDFVHSRGIIHRDVKPANIMFDRArrKLRLIDWG 159
                 46899*******9999888777777..789*9*****996.56677*****************98889*****97 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0017       4.3     142     176 ..      83     117 ..      65     132 .. 0.85
   2 !    8.0   0.0   0.00045       1.2     270     310 ..     134     170 ..     128     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
     DUF1679 142 fdeenklkgyiimeyvedihtlsmyenikadelip 176
                 +++e +    +imey+e++   ++y n++  e+  
  CDO70134.1  83 VHDEHSRSNSLIMEYIENSDWKEVYYNLTEMEIKH 117
                 56777777889******************999865 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00045
     DUF1679 270 lvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDl 310
                 ++h+D+  aNi+f +    k    ++iD+ l+ +  p+  l
  CDO70134.1 134 IIHRDVKPANIMFDRARR-K---LRLIDWGLAEFYHPGVEL 170
                 78*************555.4...479***********9987 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.029     140     177 ..     127     164 ..      29     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                     CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEE CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklvlIDFEYagyn 177
                     ++ ++    H D+ + Ni+++  ++kl lID+  a + 
      CDO70134.1 127 DFVHSRGIIHRDVKPANIMFDRARRKLRLIDWGLAEFY 164
                     3444456679**********************777665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.21   5.4e+02     155     207 ..      30      81 ..      22     106 .. 0.75
   2 ?   11.8   0.0   2.9e-05     0.073     322     391 ..     129     190 ..     107     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
  Pkinase_fungal 155 gRgTtcwrarkegergkeyvvKdsWrdaerk..sEaelLkkaeergvegvarlva 207
                     gR   ++++  ++++   +v+K     a++k  +E ++L++    g  ++ rl+ 
      CDO70134.1  30 GRYSEVFEGVDSSNE-DPCVIKVLKPVARKKikREIKILRNL--TGGPNIIRLMD 81 
                     677788888887666.58999988765555556999999999..77777777654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.9e-05
  Pkinase_fungal 322 LflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeH 391
                      +   gi+HrD+   Ni++      ++rk  LiD  la  ++      + ++r+  ++F   e+l g +H
      CDO70134.1 129 VH-SRGIIHRDVKPANIMFD----RARRKLRLIDWGLAEFYHP---GVELHIRVASRYFKGPELLVGYKH 190
                     44.89**************9....6789999***999998884...233467777777777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2322.11
//
Query:       CDO70135.1  [L=736]
Description: hypothetical protein BN946_scf184783.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0015   17.6   0.1       0.45    9.5   0.1    2.3  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   2.5e-05      0.45      33     111 ..     274     344 ..     255     348 .. 0.80
   2 !    5.6   0.0   0.00038       6.8     166     188 ..     370     392 ..     368     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 2.5e-05
  Fungal_trans  33 ayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdra 111
                     ++ +lll+++a+Gal   s++ +++  ++ ++       l++++l ++  +  ++ l ++q+L l ++y  + ++ +
    CDO70135.1 274 SPHDLALLLLCFAIGALVDLSQSPYNSEAEHYSQ-------LAQAALALQ-SVLANPTLVTIQALHLHSIYIAMVGNEP 344
                   5678899***********9999999966666644.......344444433.5555666**************9999865 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00038
  Fungal_trans 166 ialklGrppllddsqinlpLPcd 188
                   ++l++Grpp ++ + i++ +P  
    CDO70135.1 370 TSLMTGRPPVIRREYIDCKFPTP 392
                   79*******99********8864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5109.57
//
Query:       CDO70136.1  [L=809]
Description: hypothetical protein BN946_scf184783.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-22   77.4   2.3    1.9e-21   76.3   0.0    2.2  2  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
          6    5.6   6.0         10    4.8   6.0    1.2  1  DLIC          Dynein light intermediate chain (DLIC)
        6.8    7.1   8.1         15    6.0   8.1    1.5  1  NUDE_C        NUDE protein, C-terminal conserved region


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   3.1e-25   1.9e-21      77     201 ..     228     347 ..     173     371 .. 0.81
   2 ?   -0.3   0.9     0.074   4.4e+02       1      40 [.     413     456 ..     413     465 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.1e-25
  Fungal_trans  77 eilihedfsspssslwilqsLlllelyektss...dralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialkl 170
                   ++l++++ +++++ ++++q+L+l+  y++ +    ++++++r++++a +l +s+gLhr++++++      l  +  ++rr+l+w  F ++ ++++ l
    CDO70136.1 228 SALSLRSVFDSPE-IETVQALVLMGEYHSLCIqrySIESAWRIMSLAAKLGQSVGLHRDSAQWK------LADKYVQRRRNLFWEMFTIEMIHCMSL 317
                   4455566667777.*************999985556777888**********************......*************************** PP

  Fungal_trans 171 GrppllddsqinlpLPcddddlwesddasee 201
                   Grpp l+   i+++LP+dd+    s d ++ 
    CDO70136.1 318 GRPPALSFGHIDCELPDDDE-ASVSGDGNNL 347
                   ****99*************9.5555555444 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.074
  Fungal_trans   1 ldrffsnfhpqfpilhk.psflpkt...ssenssksayasplll 40 
                   l++ff   +  ++++h   +f+ +    + +n+ +s+ya+++l+
    CDO70136.1 413 LKSFFLSHFRSITMIHIhRTFFAQAlldHPNNPLSSPYAPSFLA 456
                   78999999999*****9889999999999999999****99997 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.0    0.0017        10     332     426 ..     592     688 ..     584     706 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0017
        DLIC 332 vflvkqqsllakqpatatrgvesp..arsqsgsprttnrsapanvasvspqssvkkidpklkaaaaseGvlanffnsllskksGsPgsagagggaaa 426
                  fl++++  +  +p+ a+ ++++p  + ++++s+ t + s+++ ++s +pq+++   d  +  ++  e  ++n   sl++  s  P+sa+ +  +++
  CDO70136.1 592 KFLSRRRTKIPAKPRDASTSSNAPssTATSTSSGPTPGPSSSTPAPSGTPQTASTPSDDGMSISQHVEEQMSNVHPSLMEYLSLFPSSASISVVNQS 688
                 5888888888777776665555541045566777888999999999****************************************99998444333 PP

>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.1    0.0026        15      50     155 ..     578     683 ..     572     704 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0026
      NUDE_C  50 eleiiqeklrkaeek..lrrrkplslsspstpqsleiekrspavqasssPviatppekslsslatg..setatppsPpasessdllrkvlaltsklarq 144
                 el+i   ++r +++k  +rrr +++  +p+ +++   +  s+a+++ss P   tp  +s + + +g  ++++tp    +s+s +  +++ + +++l + 
  CDO70136.1 578 ELAIFGGQTRVVTNKflSRRRTKIPA-KPRDASTSSNAPSSTATSTSSGP---TPGPSSSTPAPSGtpQTASTPSDDGMSISQHVEEQMSNVHPSLMEY 672
                 78888888888888855677777776.66666555555555555555555...4444442333334444555666667888886666777777777776 PP

      NUDE_C 145 rasisdsaask 155
                     ++sa+ +
  CDO70136.1 673 LSLFPSSASIS 683
                 66666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5287.44
//
Query:       CDO70137.1  [L=80]
Description: hypothetical protein BN946_scf184783.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 561.67
//
Query:       CDO70138.1  [L=441]
Description: hypothetical protein BN946_scf184783.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-27   95.9   0.2    5.3e-27   95.0   0.2    1.5  1  SQS_PSY   Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.2     3e-31   5.3e-27       2     244 ..      57     342 ..      56     360 .. 0.74

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 3e-31
                 XHH-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----.........------------...............---------TH............ CS
     SQS_PSY   2 raasksfylaslllppelRdalgalYafcreaddlvDdvseplqara.rldwwrdavdavya.............edklkpprepvl............ 74 
                  + s+sf+ +++ l+ +l + ++++Y+  r +d+l+Dd + p+++++  l+++++      +                        l            
  CDO70138.1  57 DQTSRSFAGVIKELNGDLARVVCLFYLILRGLDTLEDDMTLPDEKKQpLLRQFHKLAITPGWtftesgpdekdrqV----------Lvewtvvcdelll 145
                 5789************************************777777658888888877777788876554433330..........2355555566666 PP

                 .....HHHHHHHHHHT..--HHHHHHHHHHTS--SS-.......--.SHHHHHHHHHHHHHHHHHHHHHHH-S.S-H.....HHHHHHHHHHHHHHHHH CS
     SQS_PSY  75 .....ralaqlirtyk..lpkellleliegmeadlef.....trye.tlddLeeYcyrvagvVgelclrllgarrsd.....ralaeaarrlGkalQlt 155
                      +  a+++++ +  ++ ++ +++  gm+ ++++     + y+ t d++  Yc++vag Vge ++rl+ a+ ++     +  +e+++++G+ lQ t
  CDO70138.1 146 ldsrlTRPAPTASRRYrdIILDITEKVETGMADFAHRaattdKVYVeTVDEYNLYCHYVAGLVGEGLTRLWSASGKEadwlgE-QLELSNAMGTMLQKT 243
                 6664433333333333599999**********999986654433767**************************8555568853.49************* PP

                 HHHT---SHHHHTT..S-HHHHHHHT--HHHHHHT-............-SHH.HHHHHHH..HHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHH CS
     SQS_PSY 156 nilRdvpeDaergrvyLPadvlkefgvseedllrkg...........vrsae.lrallrr..laerArelldearellkqlpdrrarpalllavalyra 240
                 ni+Rd +eDa+++r ++P++++ +  +++++    g             + +  +al+++  ++     +  ++ ++l+ l+++ + ++++++  +++a
  CDO70138.1 244 NIIRDFREDADERRFFWPREIWGRDVYGKAAG---GlppfremaemhA-PGReKQALWAQsgMIVDVLCYACDSLDYLRLLREQSVFAFCAIPQTMAMA 338
                 **********************7733444433...2345777777743.33335555554114445555667788888889999999999999999999 PP

                 HHHH CS
     SQS_PSY 241 iler 244
                 +l  
  CDO70138.1 339 TLAL 342
                 9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2957.35
//
Query:       CDO70139.1  [L=499]
Description: hypothetical protein BN946_scf184783.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-45  153.5  12.2      6e-12   46.0   0.0    6.8  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
    1.4e-23   82.1  16.4    2.5e-09   36.7   0.4    5.6  5  RCC1_2    Regulator of chromosome condensation (RCC1) repeat
  ------ inclusion threshold ------
       0.19   12.1   0.5         88    3.9   0.0    4.0  4  Reg_prop  Two component regulator propeller


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0054        32       2      32 ..      16      60 ..      16      80 .. 0.61
   2 !   32.5   0.0   1.6e-11   9.8e-08       1      49 [.      83     138 ..      83     139 .. 0.81
   3 !   19.9   0.1   1.4e-07   0.00084       1      50 []     142     195 ..     142     195 .. 0.73
   4 !   46.0   0.0     1e-15     6e-12       1      50 []     198     259 ..     198     259 .. 0.83
   5 !   30.2   0.1   8.3e-11     5e-07       1      44 [.     262     309 ..     262     315 .. 0.76
   6 ?   -3.1   0.0       2.1   1.3e+04      33      44 ..     368     379 ..     362     379 .. 0.71
   7 !   22.6   0.1     2e-08   0.00012       6      50 .]     396     443 ..     395     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0054
                TEEEEEE--GGGTTSSSS-.....--E..........EEEEE-GGG CS
        RCC1  2 GrVysWGrndyGqLGlgtt.....esv..........lvPtkvegl 32
                GrV+ +G  d+ +LG +++     + +          l P  +++l
  CDO70139.1 16 GRVLLCGGTDWTRLGKKDKggkkgQ-EdgtpttspdlLEPHILRSL 60
                9***************666544432.24343333333334444444 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.6e-11
                 TTEEEEEE--GGGTTSSSS-..--EEEEEE-.....GGGTTS-EEEEEEETTEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt..esvlvPtkv.....eglsgnrvvkvacGddhtva 49 
                 dG  + +Grnd+ +LGl      s++ P++v       ++++r++++acG +ht++
  CDO70139.1  83 DGAAWLFGRNDKSCLGLSGVdaISENAPRRVtahelGAPKNTRFIHAACGRNHTLL 138
                 8999*************6665866677****66654444444************97 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 1.4e-07
                 TTEEEEEE--GGGTTSSSS-..--EEE....EEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt..esvlv....PtkveglsgnrvvkvacGddhtval 50 
                 dG+++s G n+ Gq+G++     s+ +    P++  g + ++vvk+a+G  ++++l
  CDO70139.1 142 DGQLWSTGANHAGQCGHPACpeISSFKlangPKLG-GEK-EKVVKAAAGITFSLVL 195
                 9****************666544442233448444.433.3***********9986 PP

  == domain 4  score: 46.0 bits;  conditional E-value: 1e-15
                 TTEEEEEE--GGGTTSSSS-.--E............EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt.esv............lvPtkveglsgnrvvkvacGddhtval 50 
                 +G+V+++G+ ++GqLG+g+  e +            + P +v+gl ++++v++acG++h +al
  CDO70139.1 198 SGKVFAFGSEEKGQLGNGQAgE-RivsagksafdyeTEPILVKGLADRKIVQIACGAQHALAL 259
                 59***************88842.335555556655566**********************997 PP

  == domain 5  score: 30.2 bits;  conditional E-value: 8.3e-11
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS.-EEE...EEEET CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgn.rvvk...vacGd 44 
                 +GrV++WG n y +LGlg++++ lvP+ ++ + g  +++    +++G 
  CDO70139.1 262 EGRVFGWGYNGYCRLGLGNQQDALVPKMIPQFAGPnEITMgafIVAGP 309
                 7**************************998887545444333455555 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 2.1
                 TTS-EEEEEEET CS
        RCC1  33 sgnrvvkvacGd 44 
                  g ++  +acG+
  CDO70139.1 368 MGCKILYAACGG 379
                 45589999**96 PP

  == domain 7  score: 22.6 bits;  conditional E-value: 2e-08
                 EEE--.GGGTTSSSS-..--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   6 sWGrn.dyGqLGlgtt..esvlvPtkveglsgnrvvkvacGddhtval 50 
                 +WG++ ++G LGlg++  +s ++P + ++l+g +v ++a+G++ t++l
  CDO70139.1 396 AWGQGaQNGELGLGPNepKSATKPLQHKPLTGIDVFQIAAGQNTTFFL 443
                 79965378********5555599***********************97 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   2.8    0.0033        20       4      27 ..      70      93 ..      65      96 .. 0.89
   2 !   21.0   2.2   3.5e-08   0.00021       3      30 .]     128     155 ..     126     155 .. 0.94
   3 !   22.7   0.0     1e-08   6.2e-05       1      30 []     182     211 ..     182     211 .. 0.96
   4 !   36.7   0.4   4.2e-13   2.5e-09       1      28 [.     246     273 ..     246     274 .. 0.96
   5 ?   -0.8   0.0      0.24   1.4e+03       3      15 ..     432     444 ..     432     445 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0033
      RCC1_2  4 vsaGdyHscaLtedGeVlcWGsNs 27
                 s+ ++H ++L+ dG+ + +G+N+
  CDO70139.1 70 TSCVGCHCVVLDVDGAAWLFGRND 93
                6999******************96 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 3.5e-08
      RCC1_2   3 svsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 + ++G++H++ + +dG ++++G N  GQ
  CDO70139.1 128 HAACGRNHTLLVGSDGQLWSTGANHAGQ 155
                 679************************9 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 1e-08
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 V++ +aG  +s++Lt +G+V+++Gs++ GQ
  CDO70139.1 182 VVKAAAGITFSLVLTQSGKVFAFGSEEKGQ 211
                 78999************************9 PP

  == domain 4  score: 36.7 bits;  conditional E-value: 4.2e-13
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsd 28 
                 ++++++G+ H++aL+++G+V++WG N++
  CDO70139.1 246 IVQIACGAQHALALDSEGRVFGWGYNGY 273
                 79************************85 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.24
      RCC1_2   3 svsaGdyHscaLt 15 
                 +++aG + +++L+
  CDO70139.1 432 QIAAGQNTTFFLV 444
                 79****9999986 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   1.5e+04       9      20 ..      77      88 ..      71      91 .. 0.81
   2 ?    3.0   0.0     0.029   1.7e+02       8      19 ..     135     146 ..     130     151 .. 0.81
   3 ?   -0.9   0.0      0.54   3.2e+03       9      18 ..     256     265 ..     253     266 .. 0.86
   4 ?    3.9   0.0     0.015        88       7      22 ..     310     325 ..     306     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
                EEEE-TTSCEEE CS
    Reg_prop  9 aileDsdGrlWv 20
                +++ D dG  W+
  CDO70139.1 77 CVVLDVDGAAWL 88
                788899999997 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.029
                 EEEEE-TTSCEE CS
    Reg_prop   8 taileDsdGrlW 19 
                 +++l  sdG lW
  CDO70139.1 135 HTLLVGSDGQLW 146
                 578999****** PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.54
                 EEEE-TTSCE CS
    Reg_prop   9 aileDsdGrl 18 
                 a++ Ds+Gr+
  CDO70139.1 256 ALALDSEGRV 265
                 8999****97 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.015
                 EEEEEE-TTSCEEEEE CS
    Reg_prop   7 vtaileDsdGrlWvGt 22 
                  ++++ D++G  W+++
  CDO70139.1 310 SNSVVIDKQGMYWMAG 325
                 568999*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3670.99
//
Query:       CDO70140.1  [L=2373]
Description: hypothetical protein BN946_scf184783.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.1e-120  400.6   5.8   6.1e-120  400.6   5.8    2.0  2  FAT             FAT domain
    5.2e-67  226.3   0.1    1.5e-66  224.8   0.1    1.9  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.1e-58  197.7  12.7    5.4e-56  189.0   2.1    5.7  5  DUF3385         Domain of unknown function (DUF3385)
    1.2e-40  137.9   0.1    1.2e-40  137.9   0.1    4.0  3  FRB_dom         FKBP12-rapamycin binding domain
      2e-16   60.1  15.0      0.003   17.9   0.1   10.7 11  HEAT_2          HEAT repeats
    8.4e-16   57.5   0.8    2.6e-15   55.9   0.8    1.9  1  FATC            FATC domain
    6.7e-11   41.5  23.8      0.046   14.0   0.1   11.2 11  HEAT            HEAT repeat
    9.7e-06   25.7   7.7       0.13   12.3   0.1    6.1  6  Cnd1            non-SMC mitotic condensation complex subunit 
    1.4e-05   25.5   0.4       0.13   12.8   0.0    4.3  3  TPR_19          Tetratricopeptide repeat
    1.7e-05   25.2  27.5      0.002   18.6   0.2   11.5 12  HEAT_EZ         HEAT-like repeat
    2.3e-05   24.9   3.3         16    6.2   0.1    8.2 10  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
    9.1e-05   22.2   3.1       0.03   14.3   0.2    4.0  3  TPR_7           Tetratricopeptide repeat
    0.00054   19.6   3.5        6.5    6.2   0.1    5.6  6  CLASP_N         CLASP N terminal
    0.00067   18.9   5.1       0.32   10.0   0.5    5.9  6  IFRD            Interferon-related developmental regulator (I
     0.0032   17.6   6.4        7.6    6.8   0.1    6.7  6  RTP1_C1         Required for nuclear transport of RNA pol II 
  ------ inclusion threshold ------
      0.043   13.7   0.6         13    5.8   0.1    3.1  2  TPR_1           Tetratricopeptide repeat
       0.14   12.4   9.7       0.18   12.2   0.2    4.7  4  Cohesin_HEAT    HEAT repeat associated with sister chromatid 
       0.18   12.0   8.5        2.9    8.2   0.1    4.4  3  TPR_2           Tetratricopeptide repeat
       0.76    9.5   7.5         17    5.1   1.5    4.7  4  DUF4042         Domain of unknown function (DUF4042)
        3.1    7.9   9.7        3.5    7.7   0.1    4.6  4  ParcG           Parkin co-regulated protein


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.8   1.6e+03     238     262 ..    1301    1326 ..    1261    1333 .. 0.78
   2 !  400.6   5.8  6.8e-123  6.1e-120       1     346 []    1375    1727 ..    1375    1727 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.8
                  .....HH.HHCCCTCCCCCCCCCCCT CS
         FAT  238 eeftkll.arcylkkGewqealqkld 262 
                  e++  ++  + y ++G wqeal+  +
  CDO70140.1 1301 EQYDVSKhEEWYERLGRWQEALETYE 1326
                  556666667899*********99854 PP

  == domain 2  score: 400.6 bits;  conditional E-value: 6.8e-123
                  CCCTTCCCCTSSSGHHCCCCT....TSSSS--CCCHCCCCHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS CS
         FAT    1 aplaaeaaWrlgqWdsmeeylsvlkkdspdkaffeailalhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkl 97  
                  ap+aa+aaW l++W+sme+y+ ++k ds d+ f++aila+h+nqf +a + i kar+lld el++lvgesy r y+++vr Qml+Eleei +ykq  
  CDO70140.1 1375 APMAAAAAWALNDWESMEDYIATMKPDSADRPFYRAILAVHQNQFPKAMTQIAKARDLLDPELTSLVGESYGRSYNTMVRAQMLSELEEIVNYKQYA 1471
                  79*********************************************************************************************** PP

                  ----TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT................ CS
         FAT   98 ssseklksllktWrkRlpgcqdnvevwqdiltvRslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedp........eewlp... 183 
                  +++e++++++ktW+kRl+gcq +vevwq++l+vR+lvlsp++d        mw+kfanl+rks+r+ lAek++++ll  +             +   
  CDO70140.1 1472 DQPERQAAMRKTWMKRLQGCQPDVEVWQRVLQVRALVLSPEDD------PVMWIKFANLCRKSDRMFLAEKTINSLLWPERnlqtpamrA---Qnys 1559
                  *******************************************......***************************98887788766432...0456 PP

                  TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---.................HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHH CS
         FAT  184 rappevvyaylKylwssgeqkealqkLreftsellekkeelqsgleaq.....keptnleeftkllarcylkkGewqealqkldwseekieeilqsy 275 
                  +app v+ya+lK +w++ge++e+l+ Lr+f  +l+ +   +q g++++       + +lee+++llarcy+k+Gewq al++ +w +++i++ilqsy
  CDO70140.1 1560 KAPPMVIYAHLKCNWAKGEREETLNYLRDFSAKLARD---IQAGVTTRavgepGVQGKLEELSRLLARCYFKLGEWQFALKE-EWDTRNIKDILQSY 1652
                  99******************************99987...89999999999999****************************.9************* PP

                  HCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS.....S-TCCHHHHCCT..CCHHHHTTTSSTTTCHHHHHC CS
         FAT  276 saateidpswykawhtwalfnfevvskeeeqkeeee....pedlqeyvvpavkgflksislssenslqdtlRLLt 346 
                  ++at++dpswykawhtwal+nfevvs +e+q+ ++      ++l  ++v++v+gf++sisl +en+lqdtlRLLt
  CDO70140.1 1653 YLATHYDPSWYKAWHTWALANFEVVSFLENQQYNKIgevsGQELTVHIVSSVTGFFRSISLKNENALQDTLRLLT 1727
                  ****************************988544436776456668****************************8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.1   1.7e-69   1.5e-66       2     249 ..    2019    2267 ..    2018    2268 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 1.7e-69
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH.HHHHCH CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves.lrvald 93  
                      +++++k+++dlrqde+++q+f+l++ +l  +  + +r+l ++++ v pl++++g++++v+ s+t++ l++ ++e ++v  +++++  l++a+d
      CDO70140.1 2019 YQFVLKGHEDLRQDERVMQLFSLVNGLLAVDTDCFKRRLHIQRFPVTPLAPNAGLLGWVKDSDTLHVLVRDYRESRKVLLNIEYRLmLQMAPD 2111
                      8999***********************************************************************999999999999999*** PP

                      CHCCHHHHHCC.HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   94 kkklkkekklk.fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                      +++l +++k++ fe   ++++ ++l++ ++ ks + e wle+r +++rsla+ s++++ilg+gDRh++N+++++ +gk++hIDfG++++ +++
      CDO70140.1 2112 YENLILLQKIEvFEYALENTTGQDLYRVLWLKSVNSEHWLERRATYTRSLAVNSMVGHILGLGDRHPSNLMLERHTGKVVHIDFGDCFEVAMH 2204
                      ********************************************************************************************* PP

                      SSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                      + +fp ek+Pfrltr+l +a++ s+ eg fr++ce  +++lr++++ ++++l+++v+d+li+w+
      CDO70140.1 2205 REKFP-EKIPFRLTRMLTHAMEVSGIEGSFRNTCEISMKVLRENKESMLAVLEAFVYDPLINWR 2267
                      *****.*********************************************************7 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.032        28      78     159 ..     302     383 ..     270     385 .. 0.73
   2 !  189.0   2.1     6e-59   5.4e-56       1     161 []     741     898 ..     741     898 .. 0.91
   3 ?    1.4   0.0       0.3   2.7e+02     116     151 ..     934     972 ..     910     982 .. 0.76
   4 ?    5.0   0.1     0.024        21      77     157 ..     978    1056 ..     953    1059 .. 0.72
   5 ?   -0.0   0.2      0.82   7.4e+02       1      46 [.    1763    1809 ..    1763    1856 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.032
     DUF3385  78 sn.eeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipalls..virtteesnlrefllqqLatLvsi 159
                 s+  e + +  ++ Ll+ l++ps    ++ +  ai ++ + +g+ + pfL+ i++++     +r  +++  +e ++q +++L + 
  CDO70140.1 302 STfSEHFLHKSMAHLLTQLEKPS---ERSVAFIAIGHVATAVGSDMKPFLESIMSHIKAglQMRGKKNAPSEEPMFQCVGMLAAA 383
                 33455555556666666677776...45778899**********************98844566777778888888888888765 PP

  == domain 2  score: 189.0 bits;  conditional E-value: 6e-59
     DUF3385   1 VvdPyleypqLLelLlnilkteqsqsirrevikllGilGALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLlrilkdps 99 
                 V++P++eypqLL++L +il++e+sq +rrevik+lGilGALDPy+ k   e+++   ++++++  ++ s+ ++g+s+++++yy+tvvinaLl+ilkd+s
  CDO70140.1 741 VIQPLIEYPQLLQILSRILRAESSQAVRREVIKVLGILGALDPYRRKIKPEEEAV--SEVSSSLVSTASRNLTGTSTASDDYYQTVVINALLNILKDQS 837
                 9*********************************************866543333..3344444455555589999*********************** PP

     DUF3385 100 lsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvsivk 161
                 l++hh +v+eaim ifkt+glkcv+fL+qiipa+  v+rt+++ + + ++l+qLa+Lv i+k
  CDO70140.1 838 LNNHHYKVIEAIMAIFKTQGLKCVTFLPQIIPAFTAVVRTSSA-RTQVYHLEQLAILVGIIK 898
                 ***************************************9887.****************97 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.3
     DUF3385 116 ktlglkcvpfLdqiipallsvir...tteesnlrefllq 151
                 k l+ +  pf++ i+p +l+v +   + ++sn ++ +++
  CDO70140.1 934 KALDAEFKPFIPMILPPILKVFEgemNERASNTQMKIFD 972
                 56888999*************994433334455555555 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.024
     DUF3385   77 psneeyyptvvinaLlrilkdpsls.shhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLv 157 
                   +n e y + vi  +++  + +    + +++++++i    k   ++     ++ii+ l++v+++ ++ +lr+ +l+ L+ L+
  CDO70140.1  978 GANIEEYLQLVIPLIVKTYERQDAPtPLRKKAIHTIEGLTKR--VNFSDHASRIIHPLVRVLNQPNN-ELRMAVLDTLCALM 1056
                  445444556678888877755544438999999999999995..66678899***********9887.**********9996 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.82
     DUF3385    1 VvdPyleypqLLelLlnilkteq.sqsirrevikllGilGALDPykh 46  
                  Vv  y+   +L++ L+ i + ++ sq+irr +  ll+ +G   P   
  CDO70140.1 1763 VVFLYILVTTLITALQIIARIQTpSQNIRRLINNLLTEVGKHHPQAL 1809
                  7888999999********999966*******9999999997666666 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       4.2   3.8e+03      26      68 ..     281     321 ..     266     326 .. 0.83
   2 ?   -1.3   0.0       3.4     3e+03      76      89 ..    1125    1138 ..    1095    1145 .. 0.69
   3 !  137.9   0.1   1.4e-43   1.2e-40       1      99 []    1852    1950 ..    1852    1950 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.2
     FRB_dom  26 geknveamlklleplhellekgpetlreasFaqafgreLkeae 68 
                 ++  v++m+ +l p  +l+++  +t++e+  +++  + L++ e
  CDO70140.1 281 RDPLVRKMVITLIPTLALYDT--STFSEHFLHKSMAHLLTQLE 321
                 455579999999999999998..99***999999999998876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.4
     FRB_dom   76 kteneedlnqawdi 89  
                     n+++l+qawd+
  CDO70140.1 1125 MAVNQQHLKQAWDV 1138
                  34577889999997 PP

  == domain 3  score: 137.9 bits;  conditional E-value: 1.4e-43
     FRB_dom    1 ELiRvAilwhElwhegLeeAsrlyfgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykkteneedlnqawdiyyevfrri 97  
                  ELiRvAilwhE+whegLeeAsrlyf+++n+ +m+++leplh++le gp+t+re+sF+q fgr+L+ea+e++++y+  ++++dl++aw+iyy vf++i
  CDO70140.1 1852 ELIRVAILWHEMWHEGLEEASRLYFTDHNPMGMIAYLEPLHDMLEAGPKTAREISFVQVFGRDLHEAREACRRYTMYGEKRDLERAWEIYYGVFKKI 1948
                  9************************************************************************************************ PP

     FRB_dom   98 kk 99  
                  +k
  CDO70140.1 1949 EK 1950
                  86 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.2     2e+03      33      58 ..      13      38 ..       5      66 .. 0.64
   2 ?    4.6   0.0     0.047        42      36      59 ..     104     127 ..      84     159 .. 0.76
   3 ?    0.1   0.1       1.2   1.1e+03      40      73 ..     192     232 ..     143     236 .. 0.64
   4 ?   -1.3   0.0       3.2   2.9e+03      41      54 ..     279     295 ..     269     337 .. 0.52
   5 ?    4.7   0.0     0.046        41      34      53 ..     502     521 ..     490     526 .. 0.86
   6 !   13.6   0.0   7.5e-05     0.067       1      72 [.     548     627 ..     548     644 .. 0.80
   7 ?    4.1   0.0      0.07        62      34      71 ..     666     709 ..     644     711 .. 0.69
   8 !   17.9   0.1   3.3e-06     0.003       5      60 ..     713     780 ..     709     811 .. 0.78
   9 ?   -1.6   0.0       4.1   3.6e+03      32      58 ..     825     852 ..     789     882 .. 0.73
  10 !    7.0   0.0    0.0087       7.8      10      56 ..     999    1053 ..     989    1066 .. 0.79
  11 ?    4.7   0.1     0.044        40       5      53 ..    1780    1829 ..    1775    1855 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.2
      HEAT_2 33 lpaLvellededpavRraaaeaLgai 58
                l+ L+  l++++p+v+++ a  L ++
  CDO70140.1 13 LDQLFLGLRSKSPDVQAQSALELQRY 38
                55566666666666666665555443 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.047
      HEAT_2  36 LvellededpavRraaaeaLgaig 59 
                 +  ll d+d +v  aa ++Lg+i+
  CDO70140.1 104 VKALLPDPDVNVMLAASKTLGQIA 127
                 556778888888888888888875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
      HEAT_2  40 lededpavRraaaeaLgai.......gdpealpaLkelldd 73 
                 l+d+   vR+ aae L+a+        ++   p+L+++l+d
  CDO70140.1 192 LRDSRVIVRESAAELLAACleiitqrERQTRSPFLLKILQD 232
                 56777778888888888664445433456677888887776 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 3.2
      HEAT_2  41 ededpavRraaae...a 54 
                  + dp vR+++++   +
  CDO70140.1 279 AHRDPLVRKMVITlipT 295
                 56788888888873333 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.046
      HEAT_2  34 paLvellededpavRraaae 53 
                 ++ +++l++++p+vRraaa 
  CDO70140.1 502 DCALPYLDSDHPEVRRAAAL 521
                 67788999999*****9996 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 7.5e-05
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.....rignpealpaLvellededpavRraaaeaLgaig..dpe.alpaLkelld 72 
                 +d+Ll ++  dpdp +r++++ +L       ++  e ++ L+ +++de  + R +a+  +g+++  +p+ + p+L+++l 
  CDO70140.1 548 IDKLLTVAIADPDPSIRQTVLSSLHerfdkHLAQAENVRSLFIAVNDEVFENRVTAVSLIGRLAmhNPAyVMPSLRKALI 627
                 578999999****************865444455577999*********************8864344445677776664 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.07
      HEAT_2  34 paLvell...ededpavRraaaeaLgai...gdpealpaLkell 71 
                 p+L  ll   +d+++ v +++ + Lg++   g +++lp+  el+
  CDO70140.1 666 PMLKVLLpkaSDSNATVSANILMCLGELacvGGEDVLPSVPELM 709
                 44444444437888888888888888875555788877766665 PP

  == domain 8  score: 17.9 bits;  conditional E-value: 3.3e-06
      HEAT_2   5 lqalendpdpevrraairaLgrignp............ealpaLvelleded.pavRraaaeaLgaigd 60 
                 ++ l  dp+ + r aa+++Lg++ +             ++l++L ++l+ e+  avRr++++ Lg +g 
  CDO70140.1 713 IAKL-ADPSLQKRDAALHTLGQLCSStgyviqplieypQLLQILSRILRAESsQAVRREVIKVLGILGA 780
                 6778.89**************6655545555556655599********776538***********9983 PP

  == domain 9  score: -1.6 bits;  conditional E-value: 4.1
      HEAT_2  32 alpaLvelleded.pavRraaaeaLgai 58 
                 +++aL+++l+d++  +  + ++ea+ ai
  CDO70140.1 825 VINALLNILKDQSlNNHHYKVIEAIMAI 852
                 5788888888888567888888888766 PP

  == domain 10  score: 7.0 bits;  conditional E-value: 0.0087
      HEAT_2   10 ndpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLg 56  
                  +d+ + +r++ai+++         + +  +++  Lv++l+ ++ + R+a+ ++L 
  CDO70140.1  999 QDAPTPLRKKAIHTIEgltkrvnfSDHASRIIHPLVRVLNQPNNELRMAVLDTLC 1053
                  5888899999999999777766332233499********************9994 PP

  == domain 11  score: 4.7 bits;  conditional E-value: 0.044
      HEAT_2    5 lqalendpdpevrraairaLg..rignpealpaLvellededpavRraaae 53  
                  ++++ + p++++rr +   L    +++p+al + + +++ +++avR+ aa 
  CDO70140.1 1780 IARI-QTPSQNIRRLINNLLTevGKHHPQALVYALTVASKSSSAVRKKAAL 1829
                  4555.5788888888888888555577888888888888888888888875 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.8   2.9e-18   2.6e-15       2      32 .]    2343    2373 .]    2342    2373 .] 0.99

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 2.9e-18
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  Lsv++QVd+LI +AT+ eNL+q+++GWc++w
  CDO70140.1 2343 LSVPAQVDKLIIQATSLENLCQCFSGWCAFW 2373
                  9****************************** PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.4   5.7e+03       3      22 ..      14      33 ..      12      40 .. 0.76
   2 !    7.2   0.0    0.0077       6.9      11      30 ..     110     129 ..     100     130 .. 0.86
   3 ?    5.2   0.1     0.034        31       8      30 ..     191     213 ..     184     214 .. 0.83
   4 ?   -1.9   0.0       6.7     6e+03      11      28 ..     280     297 ..     273     298 .. 0.80
   5 !    8.2   0.1    0.0036       3.2       7      27 ..     506     526 ..     502     527 .. 0.87
   6 ?    4.5   0.0     0.057        51       5      25 ..     552     572 ..     547     573 .. 0.81
   7 ?    3.5   0.1      0.13   1.1e+02       3      28 ..     669     694 ..     667     694 .. 0.89
   8 !   14.0   0.1   5.1e-05     0.046       1      29 [.     708     736 ..     708     738 .. 0.92
   9 ?   -1.4   0.1       4.4     4e+03       2      27 ..     752     778 ..     751     780 .. 0.73
  10 ?    5.2   0.1     0.035        32       2      28 ..    1030    1056 ..    1029    1059 .. 0.89
  11 ?   -1.0   0.0       3.4   3.1e+03      12      24 ..    1819    1831 ..    1813    1833 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.4
                HHHHHHHT-SSHHHHHHHHH CS
        HEAT  3 PlllkllsDpspeVReaAak 22
                + l   l+++sp+V + +a+
  CDO70140.1 14 DQLFLGLRSKSPDVQAQSAL 33
                5666669*******988775 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0077
                 -SSHHHHHHHHHHHHHHHHC CS
        HEAT  11 DpspeVReaAakaLgalaev 30 
                 Dp+ +V  aA k+Lg++ae+
  CDO70140.1 110 DPDVNVMLAASKTLGQIAEI 129
                 9*****************96 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.034
                 HHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   8 llsDpspeVReaAakaLgalaev 30 
                  l+D+   VRe+Aa+ L+a +e+
  CDO70140.1 191 PLRDSRVIVRESAAELLAACLEI 213
                 489999************98875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.7
                 -SSHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgala 28 
                 + +p VR++++  + +la
  CDO70140.1 280 HRDPLVRKMVITLIPTLA 297
                 6799*****998887765 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0036
                 HHHT-SSHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgal 27 
                   l +++peVR+aAa+++++l
  CDO70140.1 506 PYLDSDHPEVRRAAALTCCRL 526
                 568999***********9987 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.057
                 HHHHHT-SSHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLg 25 
                 l  ++ Dp+p++R++++ +L 
  CDO70140.1 552 LTVAIADPDPSIRQTVLSSLH 572
                 445579***********9985 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.13
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                  +ll   sD+++ V ++ + +Lg+la
  CDO70140.1 669 KVLLPKASDSNATVSANILMCLGELA 694
                 5678888*****************97 PP

  == domain 8  score: 14.0 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+ +++  l Dps + R+aA+ +Lg+l++
  CDO70140.1 708 LMQVIIAKLADPSLQKRDAALHTLGQLCS 736
                 688988889*******************8 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 4.4
                 HHHHHHHHT-SSHH.HHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspe.VReaAakaLgal 27 
                 l +l + l+ +s++ VR+ ++k Lg l
  CDO70140.1 752 LQILSRILRAESSQaVRREVIKVLGIL 778
                 666666777755555*******99966 PP

  == domain 10  score: 5.2 bits;  conditional E-value: 0.035
                  HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgala 28  
                  + +l++ l+ p+ e R+a++ +L+al+
  CDO70140.1 1030 IHPLVRVLNQPNNELRMAVLDTLCALM 1056
                  67788999****************996 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 3.4
                  SSHHHHHHHHHHH CS
        HEAT   12 pspeVReaAakaL 24  
                  +s+ VR+ Aa+++
  CDO70140.1 1819 SSSAVRKKAALNI 1831
                  5788******998 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.7   1.5e+03      23      50 ..     185     212 ..     164     236 .. 0.73
   2 ?   -1.0   0.0       1.8   1.6e+03      33      69 ..     281     319 ..     253     367 .. 0.67
   3 !   12.3   0.1   0.00015      0.13      32      94 ..     510     582 ..     481     631 .. 0.81
   4 !   11.4   0.0   0.00026      0.24      43     125 ..     647     733 ..     637     775 .. 0.78
   5 ?   -3.1   0.0       7.6   6.8e+03      94     126 ..    1023    1055 ..    1006    1058 .. 0.67
   6 ?   -1.5   0.1       2.6   2.3e+03      67     121 ..    1783    1833 ..    1768    1849 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.7
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakLil 50 
                  +++   L+D+   VR+ aa ++a  ++
  CDO70140.1 185 FDKILVPLRDSRVIVRESAAELLAACLE 212
                 66777789***********999887744 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
        Cnd1  33 edpyVRktaaivvakL..ilndmvkekgflselaklleD 69 
                 +dp VRk  + ++  L  ++  ++ e  + + +a+ll+ 
  CDO70140.1 281 RDPLVRKMVITLIPTLalYDTSTFSEHFLHKSMAHLLTQ 319
                 577888888777777754444455555566667777733 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00015
        Cnd1  32 DedpyVRktaaivvakL..........ilndmvkekgflselak.lleDenprVvanalaalteiseksenaiy 94 
                  ++p VR+ aa+++++L           ++ + + ++++++l++ ++ D++p++++ +l++l+e  +k   a  
  CDO70140.1 510 SDHPEVRRAAALTCCRLfvrdpicyqaSNHSIEIISDVIDKLLTvAIADPDPSIRQTVLSSLHERFDKH-LAQA 582
                 5689*************888887766444445567779999988356*****************99995.3333 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00026
        Cnd1  43 ivvakLilndmvkekg.flselakll...eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLls 125
                  +++ L++++    k   + +l+ ll   +D+n++V+an l++l e++  +++ ++ ++p++++ + ++l + s +++   l +L +
  CDO70140.1 647 RLLTLLVNATQRLIKPyAIPMLKVLLpkaSDSNATVSANILMCLGELACVGGEDVLPSVPELMQVIIAKLADPSLQKRDAALHTLGQ 733
                 556666666655555545677777777779********************99**********9999999999888888777777654 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 7.6
        Cnd1   94 ynllpdiisklsdalnecsewgqitilefLlsy 126 
                      + ii+ l+  ln+ +++ ++ +l++L   
  CDO70140.1 1023 SDHASRIIHPLVRVLNQPNNELRMAVLDTLCAL 1055
                  444566777777778888888888888887665 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.6
        Cnd1   67 leDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitile 121 
                  ++ ++++++ +  ++lte+ +  ++a++    +++sk s+    + +++  +i++
  CDO70140.1 1783 IQTPSQNIRRLINNLLTEVGKHHPQALVYA-LTVASKSSS---AVRKKAALNIMD 1833
                  566778888888888888888865554433.344455443...355555555555 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00015      0.13       5      42 ..    1316    1353 ..    1314    1354 .. 0.95
   2 ?    0.5   0.0      0.98   8.8e+02      20      53 ..    1398    1431 ..    1390    1441 .. 0.80
   3 ?    6.4   0.1     0.014        13      26      44 ..    1617    1635 ..    1612    1638 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
      TPR_19    5 gdyaeAlalleqalqedpknaearllLAeallalgqld 42  
                  g+ +eAl+ +e+   edp+ +e++++ +++l alg++d
  CDO70140.1 1316 GRWQEALETYEKRALEDPGAPEIAIGRMKCLHALGEWD 1353
                  899*********88999*******************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.98
      TPR_19   20 edpknaearllLAeallalgqldeAealLdalpe 53  
                   +p++a+   + A++ + ++q+ +A+  ++++ +
  CDO70140.1 1398 MKPDSADRPFYRAILAVHQNQFPKAMTQIAKARD 1431
                  57787777788899999******99988877665 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.014
      TPR_19   26 earllLAeallalgqldeA 44  
                  e+  lLA+++++lg+++ A
  CDO70140.1 1617 ELSRLLARCYFKLGEWQFA 1635
                  78889**********9755 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.5   1.4e+03      26      49 ..       9      32 ..       3      33 .. 0.86
   2 ?   -1.7   0.0         5   4.5e+03      31      55 .]     105     126 ..     103     126 .. 0.75
   3 ?   -1.6   0.0       4.7   4.2e+03      33      53 ..     192     208 ..     165     230 .. 0.74
   4 ?   -2.0   0.0       6.3   5.7e+03       8      31 ..     329     353 ..     326     355 .. 0.83
   5 ?    3.3   0.1      0.14   1.2e+02      37      50 ..     508     521 ..     503     527 .. 0.74
   6 ?    2.4   0.2      0.27   2.4e+02       1      49 [.     513     568 ..     513     571 .. 0.80
   7 ?   -1.6   0.0       4.8   4.3e+03       3      29 ..     599     625 ..     598     633 .. 0.71
   8 !    8.3   0.1    0.0037       3.3       2      55 .]     640     693 ..     639     693 .. 0.92
   9 !   18.6   0.2   2.2e-06     0.002       7      55 .]     686     734 ..     683     734 .. 0.90
  10 ?    1.1   0.0      0.66   5.9e+02      22      43 ..     860     881 ..     847     885 .. 0.76
  11 ?   -1.8   0.0       5.6     5e+03      19      52 ..     982    1013 ..     973    1014 .. 0.71
  12 ?    5.1   0.0     0.036        33      24      52 ..    1024    1052 ..    1019    1052 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.5
     HEAT_EZ 26 vpeilpaLlalLnddsdeVRaaAa 49
                + ++l++L  +L+++s++V+a++a
  CDO70140.1  9 QADVLDQLFLGLRSKSPDVQAQSA 32
                6789999999*********99876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5
     HEAT_EZ  31 paLlalLnddsd..eVRaaAagaLgnl 55 
                 +aLl     +++  +V  aA  +Lg++
  CDO70140.1 105 KALL-----PDPdvNVMLAASKTLGQI 126
                 5666.....7773456*********97 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.7
     HEAT_EZ  33 LlalLnddsd.eVRaaAagaLg 53 
                 L      ds   VR+ Aa  L+
  CDO70140.1 192 LR-----DSRvIVRESAAELLA 208
                 55.....555466776666654 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 6.3
     HEAT_EZ   8 aw.aLGrlaggepellqplvpeilp 31 
                 a  a+G +a   + +++p+++ i+ 
  CDO70140.1 329 AFiAIGHVATAVGSDMKPFLESIMS 353
                 5558999999999*******99996 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.14
     HEAT_EZ  37 LnddsdeVRaaAag 50 
                 L +d++eVR aAa 
  CDO70140.1 508 LDSDHPEVRRAAAL 521
                 679999**666664 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.27
     HEAT_EZ   1 wrvRraAawaLGr.......laggepellqplvpeilpaLl.alLnddsdeVRaaAa 49 
                 ++vRraAa++  +       ++ +++++    ++++++ Ll  +  d+++++R++++
  CDO70140.1 513 PEVRRAAALTC-CrlfvrdpICYQASNHSIEIISDVIDKLLtVAIADPDPSIRQTVL 568
                 57888888844.2478888999999999999999******9666699999**99987 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 4.8
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpei 29 
                 +R  A++ +Grla ++p ++ p + ++
  CDO70140.1 599 NRVTAVSLIGRLAMHNPAYVMPSLRKA 625
                 789999999999988888877644433 PP

  == domain 8  score: 8.3 bits;  conditional E-value: 0.0037
     HEAT_EZ   2 rvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 r+R+ + + L + l +   +l++p+   +l+ Ll+  +d++++V a+ + +Lg l
  CDO70140.1 640 RNREECTRLL-TlLVNATQRLIKPYAIPMLKVLLPKASDSNATVSANILMCLGEL 693
                 7899999999.66999999*********************************986 PP

  == domain 9  score: 18.6 bits;  conditional E-value: 2.2e-06
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  +++LG+la +++e++ p vpe++   +a L d+s   R aA+++Lg+l
  CDO70140.1 686 ILMCLGELACVGGEDVLPSVPELMQVIIAKLADPSLQKRDAALHTLGQL 734
                 478****999******************9998877777*********97 PP

  == domain 10  score: 1.1 bits;  conditional E-value: 0.66
     HEAT_EZ  22 lqplvpeilpaLlalLnddsde 43 
                 + +++p+i+pa+ a  +++s++
  CDO70140.1 860 CVTFLPQIIPAFTAVVRTSSAR 881
                 6789********9988777765 PP

  == domain 11  score: -1.8 bits;  conditional E-value: 5.6
     HEAT_EZ   19 pellqplvpeilpaLlalLnddsd.eV..RaaAagaL 52  
                   e+lq+++p i++         +d ++  R++A++++
  CDO70140.1  982 EEYLQLVIPLIVKTYE-----RQDaPTplRKKAIHTI 1013
                  4899999999999988.....6664224688888876 PP

  == domain 12  score: 5.1 bits;  conditional E-value: 0.036
     HEAT_EZ   24 plvpeilpaLlalLnddsdeVRaaAagaL 52  
                  ++ ++i+ +L++ Ln ++ e R a++ +L
  CDO70140.1 1024 DHASRIIHPLVRVLNQPNNELRMAVLDTL 1052
                  67889*******************99887 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.7   6.9e+03      65      88 ..      96     119 ..      49     125 .. 0.76
   2 ?    1.6   0.0      0.49   4.4e+02      36      92 ..     151     208 ..     134     212 .. 0.82
   3 ?    1.7   0.0      0.43   3.9e+02       2      32 ..     325     355 ..     324     366 .. 0.87
   4 ?    1.4   0.0      0.55     5e+02      54      87 ..     532     566 ..     473     576 .. 0.67
   5 ?   -0.5   0.0       2.2     2e+03      21      88 ..     660     727 ..     648     735 .. 0.83
   6 ?    6.2   0.1     0.017        16      22      74 ..     819     872 ..     799     881 .. 0.75
   7 ?    5.1   0.0     0.039        35      23      76 ..     862     915 ..     857     919 .. 0.91
   8 ?   -0.4   0.0       1.9   1.7e+03      12      38 ..     931     957 ..     924     963 .. 0.81
   9 ?   -0.6   0.0       2.4   2.1e+03      21      44 ..    1022    1045 ..     972    1052 .. 0.58
  10 ?   -0.1   0.0       1.6   1.5e+03      21      54 ..    1022    1055 ..    1009    1077 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.7
  Vac14_Fab1_bd  65 llneifdalvklvaDsdesvksga 88 
                    +l ++++++  l+ D d +v  +a
     CDO70140.1  96 NLFRLYNYVKALLPDPDVNVMLAA 119
                    567889999999999999987666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.49
  Vac14_Fab1_bd  36 fsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga.elld 92 
                      Dk++  Ry  +  l  +a+ + + + +++  +fd +   + Ds   v+++a ell 
     CDO70140.1 151 QADKQEPGRYAGVLILKELARNSPTYFHSHIGLVFDKILVPLRDSRVIVRESAaELLA 208
                    45888889999999999********************************976515665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.43
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpv 32 
                    +r  + i++  va a+++++k++le+i++ +
     CDO70140.1 325 ERSVAFIAIGHVATAVGSDMKPFLESIMSHI 355
                    577899*********************9987 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.55
  Vac14_Fab1_bd  54 iakvakgevlkllneifdalvkl.vaDsdesvksg 87 
                    i+ +a ++ ++ ++++ d l  + +aD d+s++++
     CDO70140.1 532 ICYQASNHSIEIISDVIDKLLTVaIADPDPSIRQT 566
                    77888899999999999988765379999999986 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 2.2
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                    ik+y   ++k++l   sD+++ v      +l  +a v  ++vl  + e+ ++++  +aD   + +++a
     CDO70140.1 660 IKPYAIPMLKVLLPKASDSNATVSANILMCLGELACVGGEDVLPSVPELMQVIIAKLADPSLQKRDAA 727
                    77888889999999999999999999999999999999999999999999999999999988877765 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.017
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkd.srvRyyacEslyniakvakgevlkllneifdalv 74 
                    + y   +++ +l++++D++ +   y ++E++  i k+   +++++l +i  a++
     CDO70140.1 819 DYYQTVVINALLNILKDQSlNNHHYKVIEAIMAIFKTQGLKCVTFLPQIIPAFT 872
                    3344567899********9345677899***********999999999865554 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.039
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvkl 76 
                    ++l +i++   ++++ +++r+  y  E l  ++ ++k++v ++ +eif+ +  l
     CDO70140.1 862 TFLPQIIPAFTAVVRTSSARTQVYHLEQLAILVGIIKQHVRNHTTEIFQLVQDL 915
                    68899*******************************************988766 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 1.9
  Vac14_Fab1_bd  12 avaialekkikeyleeivkpvlkcfsD 38 
                    a+  al+++ k+++  i++p+lk+f+ 
     CDO70140.1 931 ALGKALDAEFKPFIPMILPPILKVFEG 957
                    556689999**************9975 PP

  == domain 9  score: -0.6 bits;  conditional E-value: 2.4
  Vac14_Fab1_bd   21 ikeyleeivkpvlkcfsDkdsrvR 44  
                      +++ ++i++p++++++  ++++R
     CDO70140.1 1022 FSDHASRIIHPLVRVLNQPNNELR 1045
                     445556666666666666666655 PP

  == domain 10  score: -0.1 bits;  conditional E-value: 1.6
  Vac14_Fab1_bd   21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyni 54  
                      +++ ++i++p++++++  ++++R  + ++l  +
     CDO70140.1 1022 FSDHASRIIHPLVRVLNQPNNELRMAVLDTLCAL 1055
                     6788999***************999888777655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.3     3e+03       1      14 [.     727     740 ..     727     741 .. 0.91
   2 !   14.3   0.2   3.4e-05      0.03       8      33 ..    1311    1334 ..    1309    1337 .. 0.88
   3 ?    5.6   0.0     0.021        19       5      19 ..    1622    1636 ..    1620    1637 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.3
       TPR_7   1 aLlnLarlysrlGd 14 
                 aL+ L++l+s+ G+
  CDO70140.1 727 ALHTLGQLCSSTGY 740
                 7999*******996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.4e-05
       TPR_7    8 lysrlGdyeeAielyeqsLaltkdpe 33  
                  +y+rlG+++eA+e ye+  +  +dp+
  CDO70140.1 1311 WYERLGRWQEALETYEK--RALEDPG 1334
                  7****************..8888876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.021
       TPR_7    5 LarlysrlGdyeeAi 19  
                  Lar+y++lG+++ A+
  CDO70140.1 1622 LARCYFKLGEWQFAL 1636
                  9***********997 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   1.2e+03      25      85 ..      29      89 ..      22      98 .. 0.87
   2 ?    0.8   0.0      0.33     3e+02      72     126 ..     161     215 ..     143     227 .. 0.88
   3 !    6.2   0.0    0.0074       6.7     167     200 ..     538     571 ..     518     589 .. 0.78
   4 !    6.2   0.1    0.0073       6.5      56     128 ..     669     741 ..     609     760 .. 0.88
   5 ?   -1.0   0.0       1.2   1.1e+03      73     120 ..     925     973 ..     895     988 .. 0.78
   6 ?   -0.4   0.0      0.77   6.9e+02      85     158 ..     978    1056 ..     963    1092 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
     CLASP_N 25 eknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlk 85
                 ++ l+l+++i++ +pe  +++  +++ ++++ i++ ++s  t+    g++ +  l+++++
  CDO70140.1 29 AQSALELQRYISNTIPELSSDAAAKLWEEIINKIFDLVHSQTTAEKLGGILAIDHLLRVEG 89
                678899**********************************999988888888888777765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.33
     CLASP_N  72 tgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas 126
                 +g+++lkela+   + + + +  +++ +l  l d   i++++a+  laa l+ ++
  CDO70140.1 161 AGVLILKELARNSPTYFHSHIGLVFDKILVPLRDSRVIVRESAAELLAACLEIIT 215
                 67899***************************************99999887776 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0074
     CLASP_N 167 kleasllldliekslkkgleDanptVRetaRstf 200
                 +++ + + d i+k+l+ +++D++p++R+t  s +
  CDO70140.1 538 NHSIEIISDVIDKLLTVAIADPDPSIRQTVLSSL 571
                 4444456699******************976655 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0073
     CLASP_N  56 eailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfs 128
                 + +l ++s+   t+s++ +  l ela++ +e++ p+v  l+++++  l+d     + +a ++l +l+s++++ 
  CDO70140.1 669 KVLLPKASDSNATVSANILMCLGELACVGGEDVLPSVPELMQVIIAKLADPSLQKRDAALHTLGQLCSSTGYV 741
                 45666778888999999999*******************************9999999999999999998865 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.2
     CLASP_N  73 gchllkelaiqlkeqldpmveillptLlkllgd.tKkiisqnanqalaa 120
                 +++l++ l + l  +++p++ ++lp +lk+    + +++s++   +++a
  CDO70140.1 925 LMSLVEALGKALDAEFKPFIPMILPPILKVFEGeMNERASNTQMKIFDA 973
                 678999999***************9999988550555555555555554 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.77
     CLASP_N   85 keqldpmveillptLlkllgdt..Kkiisqnanqalaallsnasfs...prilqvlsvalqdKnvqpReysaiwLkill 158 
                  + +++++++ ++p+++k    +      +++a ++++ l + ++fs   +ri++ l   l++ n+++R  ++  L  l+
  CDO70140.1  978 GANIEEYLQLVIPLIVKTYERQdaPTPLRKKAIHTIEGLTKRVNFSdhaSRIIHPLVRVLNQPNNELRMAVLDTLCALM 1056
                  5566666666666666665433003445777777777777777764222455666666666666666666555554444 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.043        39     222     253 ..      99     130 ..      84     154 .. 0.83
   2 ?   -1.0   0.0       0.8   7.2e+02     231     259 ..     192     220 ..     179     234 .. 0.81
   3 ?   -2.5   0.0       2.4   2.2e+03      40      73 ..     544     582 ..     534     653 .. 0.84
   4 ?    3.3   0.1      0.04        36     126     171 ..     665     712 ..     581     726 .. 0.74
   5 !   10.0   0.5   0.00036      0.32      79     156 ..     705     781 ..     676     915 .. 0.70
   6 ?   -0.8   0.0      0.73   6.5e+02      76     113 ..    1023    1060 ..     973    1076 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.043
        IFRD 222 ealealvelLdssdvevriAAGeaiALlfEls 253
                 ++ +++ +lL ++dv+v +AA+++++ + E+s
  CDO70140.1  99 RLYNYVKALLPDPDVNVMLAASKTLGQIAEIS 130
                 556788899*******************9976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.8
        IFRD 231 LdssdvevriAAGeaiALlfElsreedee 259
                 L +s v vr  A e +A ++E+ ++ +++
  CDO70140.1 192 LRDSRVIVRESAAELLAACLEIITQRERQ 220
                 67788999999999999999988666554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.4
        IFRD  40 Lkqaidelt.....eksaktReaaLesllellsshylee 73 
                 ++++id+l      +   + R++ L+sl e + +h+++ 
  CDO70140.1 544 ISDVIDKLLtvaiaDPDPSIRQTVLSSLHERFDKHLAQA 582
                 667788877777778888899999999999998888765 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.04
        IFRD 126 kpvLkriikdss.vslsakaaaieaLglltfvggad.eeeieelmefl 171
                  p+Lk ++ ++s  ++++ a+++++Lg l+ vgg+d   ++ elm+++
  CDO70140.1 665 IPMLKVLLPKASdSNATVSANILMCLGELACVGGEDvLPSVPELMQVI 712
                 555555554433256899999******999999998567888888865 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00036
        IFRD  79 latlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLglltfv 156
                 + +l+++++  l   + + + +Al+ l+ lc + g + +    + +l ++L+ri++++s s +++ ++i+ Lg+l  +
  CDO70140.1 705 VPELMQVIIAKLADPSLQKRDAALHTLGQLCSSTGYVIQPLIEYPQLLQILSRILRAES-SQAVRREVIKVLGILGAL 781
                 55555555555555555555555555555555555555555555555666666666665.566666666665555444 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.73
        IFRD   76 eerlatlldalekslkkgkseEqalAlkalallcitlg 113 
                  +++ + +++ l + l + ++e +++ l  l++l+++lg
  CDO70140.1 1023 SDHASRIIHPLVRVLNQPNNELRMAVLDTLCALMVQLG 1060
                  33444455555555555555555555555555555555 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.073        65       3      71 ..      61     130 ..      13     140 .. 0.81
   2 ?    0.7   0.0      0.67     6e+02       9      52 ..     152     195 ..     143     221 .. 0.68
   3 ?   -0.3   0.1       1.3   1.1e+03       8      83 ..     556     626 ..     552     661 .. 0.54
   4 !    6.8   0.1    0.0085       7.6       3      54 ..     711     764 ..     709     786 .. 0.81
   5 ?    1.5   0.0      0.38   3.4e+02       9      69 ..     999    1057 ..     995    1064 .. 0.87
   6 ?   -2.3   0.0       5.6     5e+03      14      37 ..    1452    1475 ..    1447    1511 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.073
     RTP1_C1   3 ealkdlqdpllpvrahglvlLrkliekkske.avldiekilkllleaLkdedsYvYLnaikgLvaLadvf 71 
                 ++++ ++++  + +  g++ + +l++ + +  +++++ ++ + ++  L d+d  v L+a k+L ++a++ 
  CDO70140.1  61 KIFDLVHSQTTAEKLGGILAIDHLLRVEGEIdSKTNLFRLYNYVKALLPDPDVNVMLAASKTLGQIAEIS 130
                 5667777888888888888888888877633477778888889999999**********99999999875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.67
     RTP1_C1   9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkde 52 
                  d++ p r  g++ L++l++++ +  +++i  +++ +l  L+d+
  CDO70140.1 152 ADKQEPGRYAGVLILKELARNSPTYFHSHIGLVFDKILVPLRDS 195
                 48899***************998776666666666555555554 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83 
                 + dp + +r   l++L++ + k+   +++++++++  + + + ++     + a++++  La   p+ v++ L ++ 
  CDO70140.1 556 IADPDPSIRQTVLSSLHERFDKHL-AQAENVRSLFIAVNDEVFEN----RVTAVSLIGRLAMHNPAYVMPSLRKAL 626
                 667777777777777777776664.33333333333222222222....134555555555555555555555555 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0085
     RTP1_C1   3 ealkdlqdpllpvrahglvlLrkliekkske..avldiekilkllleaLkdeds 54 
                  ++++l dp l  r  +l++L +l+++      ++++ +++l++l + L+ e s
  CDO70140.1 711 VIIAKLADPSLQKRDAALHTLGQLCSSTGYViqPLIEYPQLLQILSRILRAESS 764
                 57899**********************98768799************9997765 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.38
     RTP1_C1    9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLad 69  
                  qd   p+r +++++++ l ++ +     ++++i++ l++ L++++  + +++  +L+aL+ 
  CDO70140.1  999 QDAPTPLRKKAIHTIEGLTKRVN--FSDHASRIIHPLVRVLNQPNNELRMAVLDTLCALMV 1057
                  78999**************9998..9999999**999999999988888888888888875 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 5.6
     RTP1_C1   14 pvrahglvlLrkliekkskeavld 37  
                   vra+ l++L+++++ k+  ++ +
  CDO70140.1 1452 MVRAQMLSELEEIVNYKQYADQPE 1475
                  69************9988663333 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.015        13      11      26 ..    1312    1327 ..    1312    1327 .. 0.95
   2 ?    4.8   0.0     0.031        28       7      22 ..    1622    1637 ..    1620    1637 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.015
                  HHHTT-HHHHHHHHHH CS
       TPR_1   11 yfklgkydeAleyyek 26  
                  y +lg+++eAle yek
  CDO70140.1 1312 YERLGRWQEALETYEK 1327
                  899***********98 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.031
                  HHHHHHHTT-HHHHHH CS
       TPR_1    7 lGnayfklgkydeAle 22  
                  l+ +yfklg+++ Al+
  CDO70140.1 1622 LARCYFKLGEWQFALK 1637
                  899*********9996 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.76   6.8e+02      27      42 .]     192     207 ..     184     207 .. 0.89
   2 ?   -1.2   0.0       3.1   2.7e+03      17      30 ..     420     433 ..     419     433 .. 0.92
   3 ?    1.6   0.1      0.39   3.5e+02      28      41 ..     557     570 ..     555     571 .. 0.87
   4 ?   12.2   0.2    0.0002      0.18      16      41 ..     705     730 ..     700     731 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.76
                   HHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  27 ltDsspsVRdAaLell 42 
                   l+Ds ++VR++a ell
    CDO70140.1 192 LRDSRVIVRESAAELL 207
                   79*********98876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.1
                   HHHHHHHHHHHHSS CS
  Cohesin_HEAT  17 pevldtiarrltDs 30 
                   p++l+ti+ rl+D+
    CDO70140.1 420 PPLLKTIQDRLLDT 433
                   899*********96 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.39
                   HSS-HHHHHHHHHH CS
  Cohesin_HEAT  28 tDsspsVRdAaLel 41 
                    D++ps+R ++L+ 
    CDO70140.1 557 ADPDPSIRQTVLSS 570
                   7**********986 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.0002
                   SHHHHHHHHHHHHSS-HHHHHHHHHH CS
  Cohesin_HEAT  16 apevldtiarrltDsspsVRdAaLel 41 
                    pe++++i+++l D+s + RdAaL +
    CDO70140.1 705 VPELMQVIIAKLADPSLQKRDAALHT 730
                   599********************965 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0033       2.9      11      26 ..    1312    1327 ..    1310    1334 .. 0.92
   2 ?    0.4   0.0         1   9.4e+02       5      29 ..    1407    1431 ..    1407    1433 .. 0.89
   3 ?    5.4   0.1     0.025        23       6      22 ..    1621    1637 ..    1617    1638 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0033
       TPR_2   11 yyklgdyeeAleafek 26  
                  y++lg+++eAle +ek
  CDO70140.1 1312 YERLGRWQEALETYEK 1327
                  99************98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1
       TPR_2    5 ynlGlayyklgdyeeAleafekAle 29  
                  ++++ ++ +++++ +A     kA  
  CDO70140.1 1407 FYRAILAVHQNQFPKAMTQIAKARD 1431
                  799*************999999866 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.025
       TPR_2    6 nlGlayyklgdyeeAle 22  
                   l+++y+klg+++ Al+
  CDO70140.1 1621 LLARCYFKLGEWQFALK 1637
                  79***********9987 PP

>> DUF4042  Domain of unknown function (DUF4042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       4.8   4.3e+03      47      69 ..     190     212 ..     188     216 .. 0.84
   2 ?    5.1   1.5     0.019        17      43     174 ..     550     695 ..     542     705 .. 0.63
   3 ?   -0.4   0.0       0.9   8.1e+02      45      69 ..     712     736 ..     699     743 .. 0.76
   4 ?    2.9   0.0     0.089        80     102     137 ..     751     786 ..     748     817 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.8
     DUF4042  47 illkDpspkvRaaalqvlaalLd 69 
                 + l+D+ + vR  a+++laa L+
  CDO70140.1 190 VPLRDSRVIVRESAAELLAACLE 212
                 5689999999*****99999886 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.019
     DUF4042  43 tLltillkDpspkvRaaalqvlaalLdgs.......ksfLsqaeesk.kksgaFtpfsvsLas....iim.elhrgllla...leaetslqvltqllkc 125
                 +Llt+++ Dp p +R+  l+ l + +d++       +s++++++++  +++ + +++   La      +m +l ++l+++   le  t+ +   ++ + 
  CDO70140.1 550 KLLTVAIADPDPSIRQTVLSSLHERFDKHlaqaenvRSLFIAVNDEVfENRVTAVSLIGRLAMhnpaYVMpSLRKALIQLlteLEYSTVTRNREECTRL 648
                 677777777777777766655555444332221111334444443334444444444444543222223313444455540005555666667899*** PP

     DUF4042 126 LavlvsatPyerLkkglltevvksvkkllkekdsnvkvsallvlgalvs 174
                 L++lv+at  +rL k     ++k +++ +++++ +v  ++l++lg l  
  CDO70140.1 649 LTLLVNAT--QRLIKPYAIPMLKVLLPKASDSNATVSANILMCLGELAC 695
                 *******9..799999999999999999999999999999***998865 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.9
     DUF4042  45 ltillkDpspkvRaaalqvlaalLd 69 
                 +   l Dps++ R aal++l +l +
  CDO70140.1 712 IIAKLADPSLQKRDAALHTLGQLCS 736
                 334478**************99865 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.089
     DUF4042 102 lhrglllaleaetslqvltqllkcLavlvsatPyer 137
                 l + l+ +l ae+s++v  +++k+L +l    Py r
  CDO70140.1 751 LLQILSRILRAESSQAVRREVIKVLGILGALDPYRR 786
                 667899**********************99999987 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.5      0.33   2.9e+02      58     130 ..     603     676 ..     588     691 .. 0.70
   2 ?    7.7   0.1    0.0039       3.5      69     132 ..     696     758 ..     681     773 .. 0.84
   3 ?    0.1   0.3      0.86   7.7e+02      55     109 ..     844     895 ..     823     916 .. 0.68
   4 ?   -1.1   0.0       1.9   1.7e+03      79     108 ..    1027    1056 ..     990    1066 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.33
       ParcG  58 ategikdlleaageekilpvlpklilplkeaLntrd.eeviesaLkvlqklvka.seligeaLvpyyrqlLpvln 130
                 a++ i  l ++ +   ++p l k  + l + L+ +  ++  e + ++l  lv+a ++li +  +p ++ lLp  +
  CDO70140.1 603 AVSLIGRLAMH-NPAYVMPSLRKALIQLLTELEYSTvTRNREECTRLLTLLVNAtQRLIKPYAIPMLKVLLPKAS 676
                 55555555555.67778888888888887777644314555666777777776626799************9887 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0039
       ParcG  69 ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlf 132
                  g+e +lp +p+l+  + + L   + +   +aL++l +l +++ ++ + L+ y  qlL++l+ +
  CDO70140.1 696 VGGEDVLPSVPELMQVIIAKLADPSLQKRDAALHTLGQLCSSTGYVIQPLIEY-PQLLQILSRI 758
                 58899**********************************************97.5788887744 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.86
       ParcG  55 rflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvk 109
                 +++  e+i+ + ++ ++ k ++ lp++i +  + ++t++ +     L+ l  lv 
  CDO70140.1 844 KVI--EAIMAIFKT-QGLKCVTFLPQIIPAFTAVVRTSSARTQVYHLEQLAILVG 895
                 443..344455555.5668888888888888888888888888888888877753 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.9
       ParcG   79 pklilplkeaLntrdeeviesaLkvlqklv 108 
                   ++i pl + Ln+ ++e  +++L++l  l+
  CDO70140.1 1027 SRIIHPLVRVLNQPNNELRMAVLDTLCALM 1056
                  68999*******************998873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.24u 0.37s 00:00:01.61 Elapsed: 00:00:00.54
# Mc/sec: 13241.66
//
Query:       CDO70141.1  [L=644]
Description: hypothetical protein BN946_scf184783.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-16   61.0   1.0     0.0001   22.9   0.0    5.3  5  RCC1        Regulator of chromosome condensation (RCC1) repea
    6.2e-08   32.2  14.9    0.00038   20.2   0.3    5.3  6  RCC1_2      Regulator of chromosome condensation (RCC1) repea
     0.0097   15.8   0.0       0.02   14.8   0.0    1.5  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.7e-08    0.0001       4      44 ..     124     169 ..     123     175 .. 0.75
   2 !   12.1   0.0   3.9e-05      0.23       2      50 .]     179     231 ..     178     231 .. 0.80
   3 ?   -0.8   0.0      0.42   2.5e+03      35      49 ..     258     275 ..     243     276 .. 0.69
   4 !    9.9   0.0   0.00019       1.1      24      49 ..     458     483 ..     440     484 .. 0.82
   5 !    9.7   0.1   0.00021       1.3       2      20 ..     488     506 ..     487     554 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.7e-08
                 EEEEE--GGGTTSSSS-..--E....EEEEE-GGGTTS-EEEEEEET CS
        RCC1   4 VysWGrndyGqLGlgtt..esv....lvPtkveglsgnrvvkvacGd 44 
                 Vy WG  ++G+LGl +    sv    ++P++++ +   r+v+ ++G+
  CDO70141.1 124 VYVWGEKSQGRLGLSDPpkSSVrdgvPYPVRLNIPG-VRIVSLVAGG 169
                 9*************55553222556699****9975.6888877775 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.9e-05
                 TEEEEEE..--GGGTTSS......SS---EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWG..rndyGqLGl......gttesvlvPtkveglsgnrvvkvacGddhtval 50 
                 G++y WG  +++   L        g++ +   P+++++++  ++ + +cG  ht al
  CDO70141.1 179 GDIYVWGvlNGETFALKSdgfaepGQRTE--RPMRLKLPT--KFRSLSCGRLHTTAL 231
                 999****8889999998844444333344..4*******9..************997 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.42
                 S...-EEEEEEETTEEEE CS
        RCC1  35 n...rvvkvacGddhtva 49 
                       v+v +G+ ++ +
  CDO70141.1 258 SpetMPVQVESGWTFSSV 275
                 044488999999999866 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00019
                 EEEEE-GGGTTS-EEEEEEETTEEEE CS
        RCC1  24 lvPtkveglsgnrvvkvacGddhtva 49 
                  +Pt ++ l+++ v++v+ Gd+h  a
  CDO70141.1 458 FLPTIIPELQNRSVISVVLGDYHYGA 483
                 67*********************766 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00021
                 TEEEEEE--GGGTTSSSS- CS
        RCC1   2 GrVysWGrndyGqLGlgtt 20 
                 G++++WG  ++G LGlg+ 
  CDO70141.1 488 GKLLTWGAFSKGALGLGDP 506
                 99**************875 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.62   3.7e+03      20      24 ..     124     128 ..     120     133 .. 0.83
   2 !    4.3   0.2    0.0059        35      13      24 ..     174     185 ..     162     190 .. 0.76
   3 !    9.8   0.2   0.00012      0.71       2      22 ..     219     239 ..     218     245 .. 0.80
   4 !    4.9   0.0     0.004        24       2      22 ..     264     284 ..     264     285 .. 0.91
   5 ?   -2.7   0.0      0.98   5.9e+03      13      21 ..     363     371 ..     362     371 .. 0.87
   6 !   20.2   0.3   6.3e-08   0.00038       1      25 [.     471     495 ..     471     500 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.62
      RCC1_2  20 VlcWG 24 
                 V+ WG
  CDO70141.1 124 VYVWG 128
                 9**** PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0059
      RCC1_2  13 aLtedGeVlcWG 24 
                 a+++ G+++ WG
  CDO70141.1 174 AIDSHGDIYVWG 185
                 789********* PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00012
      RCC1_2   2 ksvsaGdyHscaLtedGeVlc 22 
                 +s+s+G+ H+ aL+++ ++++
  CDO70141.1 219 RSLSCGRLHTTALDASSNIWT 239
                 699***********9877554 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.004
      RCC1_2   2 ksvsaGdyHscaLtedGeVlc 22 
                 ++v +G+ +s +Lt +G+Vl 
  CDO70141.1 264 VQVESGWTFSSVLTQSGDVLV 284
                 6899***************96 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 0.98
      RCC1_2  13 aLtedGeVl 21 
                 +Lt+ G+Vl
  CDO70141.1 363 GLTNKGHVL 371
                 89****997 PP

  == domain 6  score: 20.2 bits;  conditional E-value: 6.3e-08
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGs 25 
                 V+sv  GdyH+ aLt +G++l+WG 
  CDO70141.1 471 VISVVLGDYHYGALTGTGKLLTWGA 495
                 89**********************5 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.3e-06      0.02       3      44 ..      52      93 ..      50      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-06
  F-box-like  3 rLPdEiLlq.IFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44
                +LP E+ l+ IF +Lp +dLl l  + r + ++++d+   W+r
  CDO70141.1 52 DLPMELFLDgIFPHLPVRDLLHLGSTNRFFSTLTNDE-AYWHR 93
                7999988876**************************9.99*98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.55
# Mc/sec: 3549.99
//
Query:       CDO70142.1  [L=685]
Description: hypothetical protein BN946_scf184783.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1337  (0.0745719); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.38s 00:00:01.16 Elapsed: 00:00:00.53
# Mc/sec: 3880.30
//
Query:       CDO70143.1  [L=163]
Description: hypothetical protein BN946_scf184783.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1158.84
//
Query:       CDO70144.1  [L=585]
Description: hypothetical protein BN946_scf184783.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3933.39
//
Query:       CDO70145.1  [L=617]
Description: hypothetical protein BN946_scf184783.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-07   29.7   0.0    3.6e-06   27.2   0.0    2.0  1  Alpha_kinase  Alpha-kinase family
  ------ inclusion threshold ------
      0.047   12.8   0.0       0.09   11.9   0.0    1.4  1  T4SS_TraI     Type IV secretory system, conjugal DNA-protein 
        2.8    4.9   6.6        3.8    4.5   6.6    1.0  1  GREB1         Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> Alpha_kinase  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.1e-10   3.6e-06      71     184 .]     474     597 ..     449     597 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.1e-10
                   --EE---EEE.....EETTS--CSEEEEEE---S-.....EEE-B-TTS-B........-SS-SHHHHHHHHHHHHTTTS-EEE--EEETTEEES-E CS
  Alpha_kinase  71 kieflealvl.....elkeesskklflvEpylege.....fkKynsnsgyv.....kedselretmqAFshFtYeasggqllvcDlqGvgnlLTDpa 152
                   +++f++a +        ++e +k ++l+E+ +        ++Ky +n + v     + + + r    AFs          +      G g lLTDp+
    CDO70145.1 474 RLRFVNAALAvstvgDGSNERDKVCYLLEEEIPTAskppkWRKYLNNDSAVpkpqfHAKANERAQFLAFSQ--------HVQYWQTCGDGELLTDPQ 562
                   46666666664443333356666699******63347999***********65433224444444555553........333344568899****** PP

                   EE-....TT--SS-TT--HHHHHHHHHHHBB--HHH CS
  Alpha_kinase 153 Iht....kdkkrfgdtnlgeegiakFfetHkCnkic 184
                   I+t     d++ f+++nl +   a+F ++HkCn +c
    CDO70145.1 563 IVTnpslGDRQLFASGNLPSA-HATFAQQHKCNRFC 597
                   ***554444477899999766.599**********9 PP

>> T4SS_TraI  Type IV secretory system, conjugal DNA-protein transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.09      61     108 ..     478     527 ..     427     551 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.5e-05
   T4SS_TraI  61 aqdalkl..addqsirtaervYkiteparlvsapptwRtyLvrslskpek 108
                  ++al++   +d s +  ++ Y ++e+    s+pp+wR+yL  + + p++
  CDO70145.1 478 VNAALAVstVGDGSNERDKVCYLLEEEIPTASKPPKWRKYLNNDSAVPKP 527
                 5555555424566667778899999999**************99998883 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.6   0.00063       3.8    1077    1250 ..     128     300 ..     117     319 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.00063
       GREB1 1077 lvskevvreksvgsdllesdaeklsstdnedeelqedgerpksnssavqstsdsv.aadaaeessktspvkvekseskdavesglsskasakselse 1172
                  ++ ++ +r +s  +  + +d+e  s++  + e  + +g++ ++++s + +t+ +    d++++++ t+p ++++se+++     ++s++++++ ++ 
  CDO70145.1  128 FLAEQGIRPHSKYHTKIAQDEECGSTSSSDPEPSAAEGMQLRKHASRIDNTDRQGtPMDTSSSKNITMP-RRHQSETTRREPDHQRSQSRNTTVANV 223 
                  55555566666677778899999999999999999*************999876515777777788888.455555555555666777777666554 PP

       GREB1 1173 asaaaasaseeakspkasvtseeeeseeskekekeslsket.esqlsleaseqkealdakasskssssssssssassPs 1250
                    ++++   +  k pk++ ++ +    e++ ++++ +++ t +sq++++++ q++ ++   ++ +s+ +s   ++ sPs
  CDO70145.1  224 --NMTSKRLTIPKIPKRHFSDISLDDLEAEASMQDAVNTGTvRSQAKRHHAAQTALAQPAPAAVESKYGSQCETVDSPS 300 
                  ..34444444444555444443333333333344444433304455455555544444455555666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3951.97
//
Query:       CDO70146.1  [L=695]
Description: hypothetical protein BN946_scf184783.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   10.8   2.6       0.35    9.8   1.4    1.9  2  DUF3818   Domain of unknown function in PX-proteins (DUF3818)


Domain annotation for each model (and alignments):
>> DUF3818  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.039     7e+02     196     225 ..     343     372 ..     301     375 .. 0.79
   2 ?    9.8   1.4   1.9e-05      0.35     107     191 ..     574     663 ..     568     691 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.039
     DUF3818 196 asekeenedaelfedlkellklylrerDke 225
                 + ++  ++ ael  + +++l+ ++  rD++
  CDO70146.1 343 RYQSHCTAAAELLVHHQQYLNFLVIIRDRK 372
                 34555667788999**************98 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 1.9e-05
     DUF3818 107 edlkelekeikelekkidk....seelieklkkfveasee.eqeeireeseeekldllvvilrseelpklskeqleeviesykaykeakk 191
                 ed ++l+   ++l+++  +    +e+++ ++ +  +  +  e+++ ++e ++ k++ +++il s  l+kl+++q+ee  e y++ ++ k+
  CDO70146.1 574 EDQQHLRAVARSLDSSGHEsirrQEQVVHAVTQAAQGARArEERDRKAEEARVKVEATILILDSGMLEKLTRDQMEEQLEVYRKLENDKE 663
                 5666666666666654444555699999999999998866366666677777788**************************999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4668.08
//
Query:       CDO70147.1  [L=83]
Description: hypothetical protein BN946_scf184315.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 599.67
//
Query:       CDO70148.1  [L=856]
Description: hypothetical protein BN946_scf184315.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-50  171.0   0.0    1.4e-49  169.0   0.0    1.9  1  Pkinase_fungal  Fungal protein kinase
     0.0052   16.7   0.1        3.9    7.3   0.0    2.6  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   1.6e-53   1.4e-49      34     407 ..     183     619 ..     134     620 .. 0.82

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 1.6e-53
  Pkinase_fungal  34 eeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptiv..te.sdgr 125
                     ++e++k+   q+  ya++vf+ q+ R  +i +++ g ++rl + DRsG ++++ +d  ++p+ + +++  +  ++d+ LGlDpt    t+ sd+ 
      CDO70148.1 183 DAETRKQVRGQIISYAEKVFEYQH-RTSLIFLIVVGRRFRLSRWDRSGTIVTRAVDYVEHPHVLCDMLWYMGHLSDEALGLDPTARriTRgSDDY 276
                     4457888999***********996.677899****************************************************987876677777 PP

  Pkinase_fungal 126 rsyei..............................................kaeeeketekleleeplarqraivgRgTtcwrarkegergkeyv 174
                     +++++                                              + + e + +++ + +p ++   + gRgT+ + a   ++   ++v
      CDO70148.1 277 KRMYLaslavstdvnheeatlyapipkhavfayvrtmfrkslvptfpyyrlEVPAEGRMRSFLVGKPNFQAPGMAGRGTRGYVALDAETG--RFV 369
                     77777899*******************************************999999***************************997665..565 PP

  Pkinase_fungal 175 .vKdsWrdaerk..sEaelLkkaeergvegvarlvahedve..ekdddi.aeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksessk 263
                      +Kd+Wr       +E+ +L + + + v +v +lv+h d+    ++  i  e ++  ++ ++ ++ s+ + ++s++  ++ss++ v++k+ +s++
      CDO70148.1 370 wLKDAWRTHYEFveQEGSVLAQLRAAHVPNVPTLVCHGDILdqATETPIwWERKHPPQFPEP-SLPSECAFATSQGPVASSSRTLVNPKPVSSKG 463
                     49*****77664449*************************9533333345677777777777.88887565655555556777777777766654 PP

  Pkinase_fungal 264 kvekrsvdssv.stskrsrlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilit.....dskke...... 346
                     + + +s  ++  +++++ +l+   h rlv+++vG  + ++++ ++l++++ D++++h+  +++a+i+HrDiS +Nili+                
      CDO70148.1 464 TKRGASEMEDDgNDREECPLRRHRHYRLVVEEVGMRLVEFQHGRQLVQVILDCVNAHKLAVAQANIMHRDISGGNILILprnviH---Pkngklv 555
                     44433333333355555557788899*****************************************************555551...0445667 PP

  Pkinase_fungal 347 gerkglLiDLDlakelsddsses.garertGTleFmaievlkgee..HsyrhDLESffyvllwi 407
                      + kglL+D +l k +++ s  +  + ertGT +Fm+  vl++++   ++ + LESff v l+ 
      CDO70148.1 556 MKWKGLLVDWELSKPTGKASLPRpRQPERTGTWQFMSAAVLSDHDkaIEISDELESFFHVTLYY 619
                     9***************987665534589**************765567899*********9985 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00043       3.9     149     173 ..     375     409 ..     258     412 .. 0.82
   2 !    6.7   0.0   0.00065       5.9     151     183 ..     499     544 ..     450     570 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00043
                 HHH...........HHHHHHHH--SSS-EEEE-SS- CS
         APH 149 eeq...........vlaalaallpgelptvllHgDl 173
                 ++            +++ +aa++p+ +pt ++HgD+
  CDO70148.1 375 WRThyefveqegsvLAQLRAAHVPN-VPTLVCHGDI 409
                 3333334444666678899999995.*********6 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00065
                 H.............HHHHHHHH--SSS-EEEE-SS-SGGGEEEC.. CS
         APH 151 q.............vlaalaallpgelptvllHgDlhpgNllvdpd 183
                 +             +l+++ a+ ++  ++ ++H+D++ gN+l+ p+
  CDO70148.1 499 RlvefqhgrqlvqvILDCVNAHKLAVAQANIMHRDISGGNILILPR 544
                 233333333333337777777777788999************9932 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5577.50
//
Query:       CDO70149.1  [L=225]
Description: hypothetical protein BN946_scf184315.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-21   74.0   0.0    9.7e-20   70.6   0.0    1.9  2  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   5.4e-24   9.7e-20      13     150 ..       1     145 [.       1     147 [. 0.92
   2 !    1.4   0.0    0.0081   1.5e+02     190     219 ..     152     181 ..     145     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 5.4e-24
                 HHHHHCTC--SEEEEESSTSS..SHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGG..HHHTTSSEEEESS--SHHHHHHHHHHTS CS
   HpcH_HpaI  13 laekaaiagaDsvliDlEdav..alaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdle..vldlgaqvvlvPkvetaeealevvsalr 107
                 ++ek  +++ D+++ DlEd+v  + a+K+ AR +++++l +       +  + VR+ns++++++++d+   +    + ++++Pkv + +++ +v + ++
  CDO70149.1   1 MLEKSLTTNSDVIIYDLEDSVppSDADKNGARGRLAHFLSTRSSNLPSHERIAVRLNSTSTPFFAEDILqaMRLPCIRTLVLPKVHSVQDLNQVSEEIF 99 
                 8999****************988999***************99999999******************9986666789********************** PP

                 HTTTS---...HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE- CS
   HpcH_HpaI 108 epekgirg...anketrllaqiEsaegvknaeeIaavegldgvflG 150
                  ++kg r        ++++a iEsa+++ n+ +Ia+ +   g +lG
  CDO70149.1 100 LAYKGHRFrapDGPPVQIVASIESARAMYNLGQIASWQSTYGDALG 145
                 *******98777889********************88877666665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.0081
                 .E-SSHHHHHHHHHTTHCEEEEEEHHHHHH CS
   HpcH_HpaI 190 tvasdiddaegflaegalfvalGfdgklli 219
                 +v ++ +d + +++e + +  lGf+gk l+
  CDO70149.1 152 LVCVNYKDLDYLRNECEDGRRLGFTGKILR 181
                 57889999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1610.68
//
Query:       CDO70150.1  [L=332]
Description: hypothetical protein BN946_scf185009.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.8   3.3        2.3    9.0   0.1    3.3  3  DUF751    Protein of unknown function (DUF751)


Domain annotation for each model (and alignments):
>> DUF751  Protein of unknown function (DUF751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00013       2.3      28      59 ..       6      37 ..       1      38 [. 0.91
   2 ?   -3.2   0.0      0.84   1.5e+04      39      50 ..      49      60 ..      41      62 .. 0.54
   3 ?    2.8   0.2     0.011     2e+02      18      44 ..     229     255 ..     222     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00013
      DUF751 28 kpllknpvtaialigllvgglaflyftLraMl 59
                +pl k  +tai l  l++g+ ++ly+t   Ml
  CDO70150.1  6 IPLDKAYLTAIWLETLFYGMNFVLYWTCMSML 37
                78999************************998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.84
      DUF751 39 aligllvgglaf 50
                +l+g+   ++af
  CDO70150.1 49 LLVGIGTLMFAF 60
                455555444444 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.011
      DUF751  18 Giflalfeplkpllknpvtaialigll 44 
                  +f+++++p+++l     t i+++ +l
  CDO70150.1 229 NAFYIVYDPIAQLTAITPTLIIVLAAL 255
                 479**********99999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2208.99
//
Query:       CDO70151.1  [L=359]
Description: hypothetical protein BN946_scf185009.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-49  167.6   0.0    2.4e-48  165.0   0.0    1.8  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   1.3e-52   2.4e-48       9     270 ..      14     350 ..       6     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 1.3e-52
                 HHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC.............................. CS
  Inositol_P   9 avelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakge.............................. 77 
                 a++++++a  + +++f  n+lv +e+  +g++ +vt  d  +++++ + l ++fp+++i+gee+ a+                                
  CDO70151.1  14 AIAAVRRACVLTASVF--NKLVKQETLVKGDKSPVTVGDYSAQAVVNTILGRTFPQDPIVGEEDAADLRqesgntlkdrivqlanetlnapllagekee 110
                 5566666665556666..566666666678888888888888888888888888888888888888888888888888888888888888888888888 PP

                 .....................CT.SSSSSEEEEEEEEETHHHHHHT-SG-EEEEEEEETTEEEEEEEEET.T..........TTEEECEETTTEEEETC CS
  Inositol_P  78 .....................kseltedgltwivDPiDGTknFvrgipqvaVsigllvegkpvlGviaqP.l..........lgqlysaakgkGaflng 144
                                      ++ +++ g++w +DPiDGTk+F+rg +q+aV+++l+v+ ++ lGv+++P l           g l+ a++g+Ga+   
  CDO70151.1 111 wglgpsqgqtaeqlldaidrgNYAGGRTGRFWTLDPIDGTKGFLRG-DQYAVCLALIVDARVELGVMGCPnLpvtasdpsgpRGCLFVAVRGQGAYQLP 208
                 8888888888889999999***************************.9**********************6378999**99999***********8855 PP

                 ..........EEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHHHHHTSTSEEEEEC......EBHHHHHHHHHH CS
  Inositol_P 145 ..........eklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaavaeGkadaylefg.....rekkWDhAAGeai 228
                            +l++  ++p + ++l++ ++++++ ++++    +++++  + +  r+  +s++k++ +a+G+ ++yl+++     rek+WDhA G+++
  CDO70151.1 209 ladpfgalpgTRLQIPPTTPERLNFLESVEEGHAKLSFND--RVAQILGVTRPP-TRM--DSQAKYCSLARGDGAVYLRMPvgsgyREKIWDHASGAVL 302
                 6667768777777777777888888888888888888888..999999999999.555..********************999**************** PP

                 HHHTTEEEEESSSC......SSSTTSSEEEEESCHHHHHHHHHHHCCH CS
  Inositol_P 229 leeaGGvvtdakge......grlllargiiaanqkelaellaaavees 270
                 +eeaGG++td +ge      gr+l ++ +++a+ k ++++++aav+++
  CDO70151.1 303 VEEAGGIITDGRGEpldfglGRTLGENYGVVAAGKDIHAKVIAAVKQA 350
                 ********************99999988888889**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2456.31
//
Query:       CDO70152.1  [L=378]
Description: hypothetical protein BN946_scf185009.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2989.92
//
Query:       CDO70153.1  [L=564]
Description: hypothetical protein BN946_scf185009.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-18   65.1   0.1      1e-14   54.5   0.0    2.3  2  MMR_HSR1     50S ribosome-binding GTPase
    4.7e-08   32.7   0.0    2.1e-06   27.3   0.0    2.2  2  FeoB_N       Ferrous iron transport protein B
    7.1e-08   32.5   0.0    2.4e-07   30.8   0.0    1.8  1  RsgA_GTPase  RsgA GTPase
     0.0003   20.4   0.0      0.024   14.2   0.0    2.6  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00053   20.1   0.0       0.03   14.4   0.0    2.3  2  Dynamin_N    Dynamin family
     0.0038   17.6   0.1       0.36   11.2   0.0    2.9  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.055   12.8   0.0    1.8  2  AIG1         AIG1 family
      0.028   14.6   0.0        4.7    7.5   0.0    2.4  2  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.04   13.5   0.0        1.3    8.5   0.0    2.5  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.044   12.8   0.0       0.11   11.4   0.0    1.7  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
       0.11   11.8   0.0       0.17   11.1   0.0    1.3  1  Septin       Septin
       0.17   12.4   0.0       0.17   12.4   0.0    2.2  3  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0015       2.3      62     114 .]      90     145 ..      77     145 .. 0.63
   2 !   54.5   0.0     7e-18     1e-14       2      71 ..     205     275 ..     204     324 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHC.TSEEEEEEETT.....TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  62 eekglgkaflalee.adlillvvdas.....eeklkpldeeleelleeakkplilvlnk 114
                  ++   +a++++++ +d+++lv+da+     +   + ++ee+ +  e+++k+l++vlnk
  CDO70153.1  90 LRRHYVRALHKVIDeSDIVILVLDARdpegcR--SRLVEEEVRRR-ESEGKKLVFVLNK 145
                 3335555566655559********99753321..22244444444.448999999*998 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 7e-18
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS......SHHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGli......egaseekglgkafl 71 
                 v++vG+pNvGKS+Lin+l ++ ++ v+++pg T++ ++ +++   + ++++D pG++      +   ++kg +k+ l
  CDO70153.1 205 VGVVGYPNVGKSSLINSLKRSkACAVAAQPGHTKELQTVQLE---RGLRVIDSPGVVfddddfD---DGKGNRKSNL 275
                 99******************9456*****************8...57********754432221...2223333322 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.043        64      77     124 ..     103     155 ..      86     183 .. 0.71
   2 !   27.3   0.0   1.4e-09   2.1e-06       1      57 [.     203     257 ..     203     265 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.043
                 TSSSEEEEEEEGGGHH..HHHHHHHHHH..HT.TSSEEEEEETHHHHHHTTEE CS
      FeoB_N  77 eepdvvvnvvdatnle..rnLyLtlqll..el.gvpvvlalnmideaekkgie 124
                 +e d+v+ v+da   e  r+ ++  ++   e  g+++v +ln+id + k++ +
  CDO70153.1 103 DESDIVILVLDARDPEgcRSRLVEEEVRrrESeGKKLVFVLNKIDLVPKDNAQ 155
                 6779999999999887444444444443114425899********99888766 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.4e-09
                 EEEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   1 itvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 itv +vG pnvGk++l+n+l  +k   v+  pG t e ++++l+   + ++++D PG+
  CDO70153.1 203 ITVGVVGYPNVGKSSLINSLKRSKaCAVAAQPGHTKELQTVQLE---RGLRVIDSPGV 257
                 5799*****************988468**************999...99********7 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.6e-10   2.4e-07      17     161 ..     106     257 ..      85     260 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.6e-10
                  -EEEEEEESTTTT.--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE..--TTTHTTHH.....HHHHHCT...T.SEE CS
  RsgA_GTPase  17 dqllivvslkepe.lslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevll..vsaktkegle.....elkellk...d.kts 102
                  d +++v+ + +pe ++++l++  +   e++g ++v vlnKiDl+ +++ ++++   l+++  ++ +   sa+++++l+     +l +llk       s
   CDO70153.1 106 DIVILVLDARDPEgCRSRLVEEEVRRRESEGKKLVFVLNKIDLVPKDN-AQAWLRYLRHTTPTLPFksASANQRSNLSsstapALLRLLKaykPsAQS 202
                  667777777777647889999999999********************9.6677666666543333200333333222111111333333311122445 PP

                  EEECSTT...SSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 103 vlvGqSG...vGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  + vG  G   vGKS+Lin+l+ ++  ++++         h T++ + ++l++g  +iD+PG+
   CDO70153.1 203 ITVGVVGypnVGKSSLINSLKRSKACAVAAQPG------H-TKELQTVQLERGLRVIDSPGV 257
                  5555444444***********997777765444......3.7899999*************7 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05     0.024      84     138 ..      95     153 ..      92     184 .. 0.79
   2 ?    3.2   0.0     0.036        54       3      26 ..     202     225 ..     200     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHT-SEEEEEEETT..TB.STHHHHHHHHHHHHTTTEEEEEEESCGST.HHH CS
    GTP_EFTU  84 skevirglrvlDgavlvvdav..eG.vepqteevlrlalkegvpiivfiNKmDrl.kae 138
                 ++   + +   D+++lv+da+  eG      ee +r   +eg ++++++NK+D + k++
  CDO70153.1  95 VRALHKVIDESDIVILVLDARdpEGcRSRLVEEEVRRRESEGKKLVFVLNKIDLVpKDN 153
                 55556667789*********955564445578999999999*************96433 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.036
                 EEEEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyk 26 
                  +++g++g  + GK++L+ +L  +
  CDO70153.1 202 SITVGVVGYPNVGKSSLINSLKRS 225
                 578999999999**9999999644 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.048        72     120     167 ..      96     145 ..      81     146 .. 0.68
   2 !   14.4   0.0     2e-05      0.03       1     106 [.     205     324 ..     205     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.048
                 HHHHHHHSTTEEEEEEEETTS-CC.C-.CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 120 elvkeyikkadiilavtsanhdls.ns.ealflarevdpkgkrtivvltk 167
                 + +++ i+++di+++v++a      +s  +++  r  +++gk+ ++vl+k
  CDO70153.1  96 RALHKVIDESDIVILVLDARDPEGcRSrLVEEEVRRRESEGKKLVFVLNK 145
                 6788999************9854302224455555555666669999998 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS.---S-EEEEECCT---C.............CS...SSEEEE..T-EB--CHHHHHHHHHHHHHHHTSS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnp.tTrrplelqlgeeeeas.............eravkeelkek..ekkledfsevreeieketekiagan 83 
                 + vvG  + GKSS++n+L +++   + ++p  T  + ++ql++  ++              +++ + +   +   ++  +++++++ +   +e +a++ 
  CDO70153.1 205 VGVVGYPNVGKSSLINSLKRSKACAVAAQPgHTKELQTVQLERGLRVIdspgvvfddddfdDGKGNRKS--NllLRNVVKVEDIEDPVGIVEEILARTD 301
                 68********************99998886369999999997776666666655655443333333333..2447777777777777777777777777 PP

                 SS--SS-EEEEEEETTS-SEEEE CS
   Dynamin_N  84 kgiskkvillkilsllvkgltlv 106
                  ++ kk+ +++ +s + + lt+v
  CDO70153.1 302 RAVIKKLYNVEEYSSTLEFLTMV 324
                 88888888888888887777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.072   1.1e+02     124     162 ..     126     165 ..      47     173 .. 0.73
   2 !   11.2   0.0   0.00024      0.36      11      50 ..     191     226 ..     187     266 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.072
      AAA_16 124 krllallsrderplvlvlDdlqwadeaslql.laaLlrll 162
                  + +++ ++++++lv+vl  ++ +  + +q+ l++L +++
  CDO70153.1 126 EEEVRRRESEGKKLVFVLNKIDLVPKDNAQAwLRYLRHTT 165
                 3445555555777999999999999998888899998775 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00024
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralek 50 
                 +Ll a+++ +++    v ++G++ vGKssl+++l+r+  k
  CDO70153.1 191 RLLKAYKPSAQS--ITVGVVGYPNVGKSSLINSLKRS--K 226
                 455555544444..46889***************983..2 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.64   9.6e+02      66      95 ..      87     116 ..      82     169 .. 0.61
   2 ?   12.8   0.0   3.7e-05     0.055       3      64 ..     205     263 ..     203     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.64
                 HHCHHHHHHHHHHHCTT-ESEEEEEEETTB CS
        AIG1  66 adkiskeivrclllseegihalllvlslgr 95 
                 +++++++ vr l+   +  ++++lvl++++
  CDO70153.1  87 KEQLRRHYVRALHKVIDESDIVILVLDARD 116
                 677778888888888888899999998874 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.7e-05
                 EEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC.CCTTC CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl.fdlsv 64 
                 + +vG   +GkS+ +Ns+ ++ka    + + + tk+ q++   + ++ + ViD Pg+ fd ++
  CDO70153.1 205 VGVVGYPNVGKSSLINSLKRSKACAVAA-QPGHTKELQTV---QLERGLRVIDSPGVvFDDDD 263
                 55899*************9999998884.66667776665...56788********8566554 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.023        34      77     120 .]     102     148 ..      89     148 .. 0.72
   2 ?    7.5   0.0    0.0031       4.7       3      24 ..     206     227 ..     204     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
                 HCTSCEEEEEEEGHHHHCHHH..HHHHHHHHCSS.S-EEEEEE-TTT CS
         Roc  77 lreaalailvydsrssenlke..Wlkelkkvagk.spvilvgnkiDl 120
                 + e++++ilv+d+r+ e  ++    +e++++ ++ +++++v nkiDl
  CDO70153.1 102 IDESDIVILVLDARDPEGCRSrlVEEEVRRRESEgKKLVFVLNKIDL 148
                 678999******9987755431145677777665258899*****95 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0031
                 EEESSTTSSHHHHHHCHCT-CC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkf 24 
                  +vG  +vGK+sl++++ ++k 
  CDO70153.1 206 GVVGYPNVGKSSLINSLKRSKA 227
                 589************9987765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0009       1.3     112     173 ..     105     168 ..      89     171 .. 0.64
   2 ?    1.9   0.0     0.097   1.4e+02       3      23 ..     205     225 ..     203     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0009
                 ECEEEEEEETTTH.........CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS CS
        cobW 112 ldavvavvDaknl........eaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnpea 173
                  d+v+ v+Da+          e+e ++ e++      +  ++vlnK+Dl+++++  ++  ++lr+ +p++
  CDO70153.1 105 SDIVILVLDARDPegcrsrlvEEEVRRRESE-----GKKLVFVLNKIDLVPKDNA-QAWLRYLRHTTPTL 168
                 5778888888655555433321111111111.....222378**********965.78888888877766 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.097
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 ++++G++  GK++L+n+l + 
  CDO70153.1 205 VGVVGYPNVGKSSLINSLKRS 225
                 6899************98754 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.6e-05      0.11      15      50 ..     186     223 ..     175     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
                 HHHHHHHHG..GG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  15 akellerll..akaGraqvvGltGvPGaGkstlvealg 50 
                 a +ll+ l   + + ++  vG+ G P +Gks l++ l 
  CDO70153.1 186 APALLRLLKayKPSAQSITVGVVGYPNVGKSSLINSLK 223
                 34444443300345577889**************9986 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.17       4      60 ..     202     257 ..     199     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                 EEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTC CS
      Septin   4 eftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgv 60 
                 ++t+ vvG   +Gk++lin+l +++      ++ +  k+ +tv++++   vi+  gv
  CDO70153.1 202 SITVGVVGYPNVGKSSLINSLKRSKACAVAAQPGH-TKELQTVQLERGLRVIDSPGV 257
                 68999*******************99999766655.455699999998888887776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       3.7   5.5e+03      96     117 ..     100     131 ..      84     141 .. 0.59
   2 ?   12.4   0.0   0.00012      0.17       1      67 [.     205     279 ..     205     308 .. 0.72
   3 ?   -2.9   0.4       6.3   9.4e+03     106     123 ..     520     537 ..     515     540 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.7
      AAA_18  96 k.........vvLtasp.eelleRlekRgyee 117
                 k          vL+a++ e ++ Rl + + + 
  CDO70153.1 100 KvidesdiviLVLDARDpEGCRSRLVEEEVRR 131
                 34444445446777776677777777766444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf........gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 
                 +++ G+p vGK++l + L+++ ++          +l+ v  e+gl+  + p  + + + +d++k ++ +++l +n
  CDO70153.1 205 VGVVGYPNVGKSSLINSLKRSKACavaaqpghTKELQTVQLERGLRVIDSPGVVFDDDDFDDGKGNRKSNLLLRN 279
                 6899**************888777889999865555555555555555555577777777777766666666665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.3
      AAA_18 106 lleRlekRgyeeakiken 123
                 l +R+ kR+ ++a+++ n
  CDO70153.1 520 LSRRVLKREAKKARRAAN 537
                 779999**9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4274.84
//
Query:       CDO70154.1  [L=871]
Description: hypothetical protein BN946_scf185009.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-59  200.1   0.4    3.3e-59  200.1   0.4    2.2  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    3.9e-05   23.7   0.0    8.5e-05   22.5   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0016   18.2   0.0     0.0064   16.3   0.0    2.0  2  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.013   14.9   0.0       0.14   11.6   0.0    2.2  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.4   7.5e-63   3.3e-59       1     195 [.     487     701 ..     487     706 .. 0.86
   2 ?   -4.1   2.6       2.7   1.2e+04     153     188 ..     808     846 ..     750     855 .. 0.53

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 7.5e-63
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg..... 88 
                      iill+D+Dt +p+dclr++a+ela spevai+q+ + vm+va+++ e  +++f+++++k+i++++a+g+v+p+vG++aflr+salq+++     
       CDO70154.1 487 IILLVDSDTIVPEDCLRDAARELAeSPEVAIIQHESDVMQVAHHYFENGIAHFTRRINKCISMGCANGEVAPFVGHNAFLRWSALQDAAfidea 580
                      79**********************77*************9877777777778889**********************************99999 PP

  Glyco_trans_2_3  89 .....gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el..eklillvrll....gylgsllwsalp 168
                            w+  e +vsEDfdm+lrlq k+y++r++++s  ++ke+++lt++++l++++++ayGc el   +l+ ++ +l    ++l+++lws+ p
       CDO70154.1 581 dgvkkIWS--EANVSEDFDMALRLQLKNYIIRWATYSegGFKEGVSLTCDDELNRWQKYAYGCnELifNPLVHWW-RLgpinKQLRTFLWSSAP 671
                      99999999..99**************************99***********************733553333222.22355799********** PP

  Glyco_trans_2_3 169 lhlallllfslla...lalvlllllllaal 195
                      +h+ +++l+++++   la+++ll +l ++l
       CDO70154.1 672 VHYKISMLSYMFSyygLAASALLSILNYFL 701
                      ******999987768855555555554444 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.7
  Glyco_trans_2_3 153 vrllgylgsllwsalplhlallllfslla.......lalvlll 188
                           ++  l+ s + +++++ l++  ++       + +++++
       CDO70154.1 808 R----FWLALIISLVCCAIMIILTTDAVPvgwrifsWDWAVIM 846
                      2....22222333333333333333333233333434444433 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.9e-08   8.5e-05      88     203 ..     485     611 ..     447     635 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.9e-08
  Glyco_tranf_2_3  88 sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele... 176
                      ++++llvD+Dt+v  d l+ +++ + ++p+v++++    +++  ++    g  +f++r  ++ ++  a g v+++ G   + r + l++     
       CDO70154.1 485 GEIILLVDSDTIVPEDCLRDAARELaESPEVAIIQHESDVMQVAHHYFENGIAHFTRRINKCISMGCANGeVAPFVGHNAFLRWSALQDAAfid 578
                      789**********9999999998888****************99998889999*************888879*****************99999 PP

  Glyco_tranf_2_3 177 .......gldplflltdDyelglrlrragfrtay 203
                              + +  ++ +D++++lrl   ++ + +
       CDO70154.1 579 eadgvkkIWSE-ANVSEDFDMALRLQLKNYIIRW 611
                      99987755666.8999999999999877766555 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   6.6e+03       4      24 ..     334     361 ..     334     380 .. 0.72
   2 !   16.3   0.0   1.4e-06    0.0064      80     167 ..     485     572 ..     479     574 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
                      EEESS-..TTTHHHHHHHHHHH.....G CS
  Glycos_transf_2   4 iptyNe..ektlletlesllaq.....d 24 
                      +p+y e   +t++ ++ sl++       
       CDO70154.1 334 MPVYKEslTETIAPSVYSLKKAmqtyaR 361
                      7999999999999999999988755544 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.4e-06
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                      g++il++D+D+++++d+l++ +++l + ++ +++++     +  +++  n    +  r+++ + ++  +g+++ ++g++a lr +al+
       CDO70154.1 485 GEIILLVDSDTIVPEDCLRDAARELAESPEVAIIQHESDVMQVAHHYFENGIAHFTRRINKCISMGCANGEVAPFVGHNAFLRWSALQ 572
                      99*************************7776666666666666777777766699999999999999999999999999999998886 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.078   3.5e+02      55      94 ..     390     431 ..     350     439 .. 0.72
   2 ?   11.6   0.0   3.1e-05      0.14      32     116 ..     486     574 ..     483     605 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.078
  Glyco_transf_21  55 ledpkvglVtslpvgsdakglaaal.eaaflntlagvlqa.k 94 
                       +d ++g+V  +p  s+++g+ +a   +   n+++g++ + k
       CDO70154.1 390 YADHNIGWVARPPHSSAPDGFKRAGrFKKASNMNYGLALSlK 431
                      467899**************9887633333366666666644 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.1e-05
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaal.eaaflntlagvlqa..klsglgfavGksmalrreaLeai 116
                      +++++ Dsd++v++d L++ +++l++ p+v+++++ + +++ ++ + +   a+f     + +++  + +++   vG    lr +aL+++
       CDO70154.1 486 EIILLVDSDTIVPEDCLRDAARELAEsPEVAIIQHESDVMQVAHHYFENgIAHFTRRINKCISMgcANGEVAPFVGHNAFLRWSALQDA 574
                      6899********************9999*****99777666665444441444444555555554444677777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6282.62
//
Query:       CDO70155.1  [L=525]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-18   67.2   0.1    4.5e-18   65.3   0.0    1.8  2  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
      0.052   13.3   0.0       0.11   12.3   0.0    1.4  1  YniB            YniB-like protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0     5e-22   4.5e-18      29     134 ..     285     412 ..     261     434 .. 0.79
   2 ?   -1.4   0.0      0.15   1.4e+03     145     161 ..     454     472 ..     432     488 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 5e-22
                     EEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEE..ETGG....TSTTEEEEE.EEETT-TTE.EEEEEEBTTBSG....E.....EEEEET CS
  Glyco_hydro_16  29 esgsriks..kksflyGkvearikaaksaGvvtafyl..ssed....ekahdEiDi.EflGndtgk.vqtnvygkGkgk....r.....ekrlsl 104
                       ++ri +   ++++yGkve+++k+++++ +++a+++   + d    ++ ++EiDi E  Gn+++  +q   y++G+ +    +     +k++  
      CDO70155.1 285 VMSARIHTrePYTIKYGKVEISAKLPRGDWLWPALWMlpVN-DtygsWPRSGEIDImEARGNSPDYkAQGIDYVRGSLNwgplTwlngvSKTFGW 378
                     568999996667889**********************7534.23578***************9998899999*9999997666155566555555 PP

                     ....SS-TTTS-EEEEEEEETTEEEEEETTEEEE CS
  Glyco_hydro_16 105 ....wfdptedfHtYaieWtpdkikfyVDgkpvr 134
                          +  ++ fHtYa+eWtp+ i+ yVD +++ 
      CDO70155.1 379 wtnrRKTYADGFHTYAFEWTPEFIRIYVDSRLMY 412
                     11115566789******************98765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.15
                     .-..-EESEEEEEEEEEEB CS
  Glyco_hydro_16 145 ky..Pqftpmkvavslwpg 161
                     ++  P++ +m++av+  +g
      CDO70155.1 454 PFdqPFYLIMNLAVGGTNG 472
                     4666999999999998777 PP

>> YniB  YniB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.2e-05      0.11      67      92 ..     146     171 ..     137     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
        YniB  67 kellassniaFlliylliFvGlalqa 92 
                 +e  a+++++++l+yl+ FvGla++a
  CDO70155.1 146 TEKDAKATLSYWLVYLMAFVGLAVSA 171
                 55667899***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3665.67
//
Query:       CDO70156.1  [L=876]
Description: hypothetical protein BN946_scf185009.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-60  201.9   0.6    3.2e-59  200.1   0.6    1.9  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    2.2e-06   27.7   0.0    3.9e-06   26.9   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0011   18.9   0.0     0.0036   17.1   0.0    1.9  2  Glycos_transf_2  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.099   12.1   0.0    2.1  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.6   7.2e-63   3.2e-59       1     191 [.     488     703 ..     488     707 .. 0.86

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 7.2e-63
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg..... 88 
                      iill+D+Dtv+p+dclr++a+ela spevai+q+ + vm+va+++ e  +++f+++++k+i++++a+g+v+p+vG++aflr+salq+++     
       CDO70156.1 488 IILLVDSDTVVPEDCLRDAARELAeSPEVAIIQHESDVMQVAHHYFENGIAHFTRRINKCISMGCANGEVAPFVGHNAFLRWSALQDAAfldpa 581
                      79**********************77*************9877777777778889**********************************9**** PP

  Glyco_trans_2_3  89 .....gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el..eklillvrll...gylgsllwsalpl 169
                            w+  es+vsEDfdm+lrl+ k y++r++++s  ++ke+++lt++++l++++++ayGc el   +li ++rl    ++l+++lw++ p+
       CDO70156.1 582 dgvkkIWS--ESNVSEDFDMALRLLLKQYNIRWATYSegGFKEGVSLTCDDELNRWQKYAYGCnELifNPLIHWWRLGpitKQLRTFLWCSAPV 673
                      *9******..****************************99***********************73356444433333355699*********** PP

  Glyco_trans_2_3 170 hlallllfslla........lalvllllll 191
                      h+ +++++++++        l+++l+++ll
       CDO70156.1 674 HYKISMMSYMFSyyglaasaLITILNYFLL 703
                      ***999999877688655433333333333 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   8.8e-10   3.9e-06      87     205 ..     484     614 ..     444     638 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 8.8e-10
  Glyco_tranf_2_3  87 k.sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele. 176
                      + ++++llvD+Dtvv  d l+ +++ + ++p+v++++    +++  ++    g  +f++r  ++ ++  a g v+++ G   + r + l++   
       CDO70156.1 484 RvGEIILLVDSDTVVPEDCLRDAARELaESPEVAIIQHESDVMQVAHHYFENGIAHFTRRINKCISMGCANGeVAPFVGHNAFLRWSALQDAAf 577
                      2689***********9999999998888****************99998889999*************888879******************99 PP

  Glyco_tranf_2_3 177 .........gldplflltdDyelglrlrragfrtayvp 205
                                + + +++ +D++++lrl    + + ++ 
       CDO70156.1 578 ldpadgvkkIWSE-SNVSEDFDMALRLLLKQYNIRWAT 614
                      9999988755777.9999********999888877765 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         2     9e+03       4      23 ..     332     353 ..     330     360 .. 0.84
   2 !   17.1   0.0   8.1e-07    0.0036      80     167 ..     486     573 ..     480     575 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
                      EEESS-..TTTHHHHHHHHHHH CS
  Glycos_transf_2   4 iptyNe..ektlletlesllaq 23 
                      +p+y e   kt++ ++ sl++ 
       CDO70156.1 332 MPVYREslTKTIAPSIYSLKKA 353
                      8999999999999999999987 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 8.1e-07
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                      g++il++D+D+++++d+l++ +++l + ++ +++++     +  +++  n    +  r+++ + ++  +g+++ ++g++a lr +al+
       CDO70156.1 486 GEIILLVDSDTVVPEDCLRDAARELAESPEVAIIQHESDVMQVAHHYFENGIAHFTRRINKCISMGCANGEVAPFVGHNAFLRWSALQ 573
                      99*************************7776666666666666777777766699999999999999999999999999999998886 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.099   4.4e+02      56      79 ..     389     412 ..     355     434 .. 0.77
   2 ?   12.1   0.0   2.2e-05     0.099      32     115 ..     487     574 ..     478     583 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.099
  Glyco_transf_21  56 edpkvglVtslpvgsdakglaaal 79 
                      ed +vg+V  +p  s++ g+ +a 
       CDO70156.1 389 EDHNVGWVARPPHSSAPGGFNRAG 412
                      6789**************987765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.2e-05
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaal.eaaflntlagvlqa..klsglgfavGksmalrreaLea 115
                      +++++ Dsd++v++d L++ +++l++ p+v+++++ + +++ ++ + +   a+f     + +++  + +++   vG    lr +aL++
       CDO70156.1 487 EIILLVDSDTVVPEDCLRDAARELAEsPEVAIIQHESDVMQVAHHYFENgIAHFTRRINKCISMgcANGEVAPFVGHNAFLRWSALQD 574
                      6899********************9999****99977766666544444144444455555555444466777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5854.15
//
Query:       CDO70157.1  [L=543]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-18   65.2   0.0    9.6e-18   64.3   0.0    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   5.4e-22   9.6e-18      26     133 ..     300     429 ..     274     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 5.4e-22
                     EEEEEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEE..ETGG....TSTTEEEEE.EEETT-TTE.EEEEEEBTTBSG....E.....EEE CS
  Glyco_hydro_16  26 ldkesgsriks..kksflyGkvearikaaksaGvvtafyl..ssed....ekahdEiDi.EflGndtgk.vqtnvygkGkgk....r.....ekr 101
                     ++   ++ri +   ++++yGkve+++k+++++ +++a+++    +d    ++ ++EiDi E  Gn+++  +q   y++G+ +    +     +k+
      CDO70157.1 300 IPPVMSARIHTrePYTIKYGKVEITAKLPRGDWLWPALWMlpL-DDaygpWPRSGEIDImEARGNSQEYkAQGIDYVRGSLNwgpfTwlngvSKT 393
                     555679999996667889**********************542.334689***************776669*****9999997666155566555 PP

                     EET....SS-TTTS-EEEEEEEETTEEEEEETTEEE CS
  Glyco_hydro_16 102 lsl....wfdptedfHtYaieWtpdkikfyVDgkpv 133
                     +       + +++ fHtY++eWtp+ i+ yVD ++ 
      CDO70157.1 394 FGWwtnrRKTFADGFHTYSLEWTPEFIRIYVDSRLT 429
                     54422226678889******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3700.64
//
Query:       CDO70158.1  [L=600]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-16   59.0   0.3    1.6e-15   57.1   0.1    2.0  2  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   8.8e-20   1.6e-15      29     132 ..     360     485 ..     326     501 .. 0.78
   2 ?   -2.2   0.0      0.13   2.4e+03     145     161 ..     529     547 ..     516     557 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 8.8e-20
                     EEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEE...ETGG..TSTTEEEEE.EEETT-TTE.EEEEEEBTTBSG....E.........EEE CS
  Glyco_hydro_16  29 esgsriks..kksflyGkvearikaaksaGvvtafyl...ssed..ekahdEiDi.EflGndtgk.vqtnvygkGkgk....r.........ekr 101
                       ++ri++  +++++yG+ve+ +k++ ++ + +++++   s+    ++a++EiDi    Gn ++  +q   y++G+ +    +            
      CDO70158.1 360 VMSARITTknSHYIRYGRVEVVAKLPMGDWIAPSIWMlpvSNAYgaWPASGEIDImQARGNPPEYpAQGVDYVRGSLHwgpfTwldgvsktfGWW 454
                     5689999988899************************874443379***************9998988888999998865551555662224333 PP

                     EETSS-TTTS-EEEEEEEETTEEEEEETTEE CS
  Glyco_hydro_16 102 lslwfdptedfHtYaieWtpdkikfyVDgkp 132
                      ++ + ++e fHtYa+eWtp+ i+ yVD ++
      CDO70158.1 455 TNRRKTFAEGFHTYALEWTPEFIRIYVDSRL 485
                     4446778999******************876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.13
                     .-..-EESEEEEEEEEEEB CS
  Glyco_hydro_16 145 ky..Pqftpmkvavslwpg 161
                     ++  P++ +m vav+  +g
      CDO70158.1 529 PFdqPFYLIMDVAVGGTNG 547
                     567799********98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4089.36
//
Query:       CDO70159.1  [L=882]
Description: hypothetical protein BN946_scf185009.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-53  179.4   1.0    7.3e-53  179.4   1.0    1.8  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    5.5e-05   23.2   0.0    0.00011   22.1   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.013   15.3   0.0       0.13   12.0   0.0    2.5  2  Glycos_transf_2  Glycosyl transferase family 2
      0.033   13.7   0.0       0.12   11.8   0.0    1.9  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   1.0   1.6e-56   7.3e-53       1     194 [.     497     710 ..     497     718 .. 0.85
   2 ?   -3.6   0.3         2   8.8e+03     170     190 ..     823     843 ..     781     865 .. 0.58

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.6e-56
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaelas.pevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvp.svGsgaflrrsalqevg.... 88 
                      iil++D+Dt +p+dclr++a+el++ pevai+q+ + vm+van++ e  +++f+++++++i++ +a+g+v++ +vG++aflr+salq+++    
       CDO70159.1 497 IILIVDSDTIVPEDCLRDAARELSEcPEVAIIQHESDVMQVANHYFENGITHFTRRINRCISMCCANGEVASpFVGHNAFLRWSALQDAAfide 590
                      79**********************88*************9877777777778889**************875499***************9999 PP

  Glyco_trans_2_3  89 ......gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el..eklillvrll...gylgsllwsalp 168
                             w+  e +vsEDfdm+lrl+ +Gy++r++++s  ++ke+++lt++++l++++++ yGc el   +li+++      ++l+ ++ws+ p
       CDO70159.1 591 adgvkkIWS--EANVSEDFDMALRLMLRGYIIRWATYSnrGFKEGVSLTCDDELNRWQKYSYGCnELifNPLIQWWYKGpitKQLRIFMWSSAP 682
                      999999999..99***************************************************733676666655333444899999****** PP

  Glyco_trans_2_3 169 lhlallllfslla........lalvlllllllaa 194
                      +h+ + +++++++        +      l l+ +
       CDO70159.1 683 VHYKIGMMSYMFSyyalsgafF------LSLMNY 710
                      ******9999766444443322......222222 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
  Glyco_trans_2_3 170 hlallllfsllalalvlllll 190
                      +l++++++ +++++l++ ++ 
       CDO70159.1 823 SLVISFMAVFVMIILTTDIIP 843
                      333333333333333333332 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.5e-08   0.00011      88     204 ..     495     623 ..     457     646 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.5e-08
  Glyco_tranf_2_3  88 sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralg.v.ltlnGsgslirrevlkele.. 176
                      ++++l+vD+Dt+v  d l+ +++ + + p+v++++    +++  ++    g ++f++r  r+ ++  a g v  ++ G   + r + l++    
       CDO70159.1 495 GEIILIVDSDTIVPEDCLRDAARELsECPEVAIIQHESDVMQVANHYFENGITHFTRRINRCISMCCANGeVaSPFVGHNAFLRWSALQDAAfi 588
                      89***********9999999999998999************988888889999*************88877658899***************9* PP

  Glyco_tranf_2_3 177 ........gldplflltdDyelglrlrragfrtayv 204
                               + +  ++ +D++++lrl+ +g+ + ++
       CDO70159.1 589 deadgvkkIWSE-ANVSEDFDMALRLMLRGYIIRWA 623
                      *99988755666.9999*************988876 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.18   8.2e+02       3      36 ..     340     380 ..     338     402 .. 0.78
   2 ?   12.0   0.0   2.9e-05      0.13      80     117 ..     495     531 ..     492     584 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
                      EEEESS-..TTTHHHHHHHHHHH.....GGCCEEEEEEEEE CS
  Glycos_transf_2   3 viptyNe..ektlletlesllaq.....dpypdfeiivvDD 36 
                       +p+y e  ++t++ ++ sl++             i+v DD
       CDO70159.1 340 EMPVYKEslKETIAPSVYSLKKAmqtyaRQGGTSSIFVHDD 380
                      58******************999766555555555555555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.9e-05
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEE CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdgadvvlgqrp 117
                      g++il++D+D+++++d+l++ +++l +  + v++ q+ 
       CDO70159.1 495 GEIILIVDSDTIVPEDCLRDAARELSE-CPEVAIIQHE 531
                      89*************************.7767766654 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.46   2.1e+03      56      78 ..     398     420 ..     374     441 .. 0.75
   2 ?   11.8   0.0   2.7e-05      0.12      32      74 ..     496     539 ..     488     618 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.46
  Glyco_transf_21  56 edpkvglVtslpvgsdakglaaa 78 
                      +d+++g+V  +p  s+++g  +a
       CDO70159.1 398 ADQNIGWVARPPHSSAPDGYKRA 420
                      5679999****999999985544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.7e-05
  Glyco_transf_21  32 dllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakg 74 
                      ++++i Dsd++v++d L++ +++l++ p+v+++++ + +++ ++
       CDO70159.1 496 EIILIVDSDTIVPEDCLRDAARELSEcPEVAIIQHESDVMQVAN 539
                      689***********************999999998666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6174.76
//
Query:       CDO70160.1  [L=596]
Description: hypothetical protein BN946_scf185009.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00056   20.2   0.0     0.0018   18.6   0.0    2.0  2  FHA           FHA domain
  ------ inclusion threshold ------
      0.015   14.9   2.3      0.022   14.3   2.3    1.2  1  MscS_porin    Mechanosensitive ion channel porin domain
       0.07   13.1   0.1       0.12   12.3   0.1    1.3  1  Borrelia_REV  Borrelia burgdorferi REV protein
      0.075   11.6   0.0      0.085   11.4   0.0    1.1  1  Macoilin      Macoilin family


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.1e-07    0.0018      33      69 .]      59     101 ..      35     101 .. 0.89
   2 ?   -3.6   0.0       3.3   1.5e+04      33      50 ..     449     465 ..     440     471 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.1e-07
                 EEEEEEESSSSSEEETT......EEESTTSEEEE-TTEEEEET CS
         FHA  33 kvyleDlgSknGtfvNg......qrigkgepveLksgdvielG 69 
                  vyl+Dl+S +Gt++ +      + ++++ p+ L++gd i++G
  CDO70160.1  59 VVYLIDLHSHHGTYLLRsgelasTLLQPEVPTVLADGDLITFG 101
                 69*************4444566699999**************8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.3
                 EEEEEEESSSSSEEETTE CS
         FHA  33 kvyleDlgSknGtfvNgq 50 
                 +  ++Dl+    tfv ++
  CDO70160.1 449 GSLVTDLQ-ERRTFVEHE 465
                 66788885.888999775 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.3     5e-06     0.022      59     163 ..     399     506 ..     396     519 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-06
  MscS_porin  59 elealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaage......alsqaqr 151
                 elea     +e++ eil+k  l+ L  ++++t ++l+    ql++++ +l  l +  + +q++ t    + + + + L +   a+e      +l+++ r
  CDO70160.1 399 ELEAC---IPEETTEILTKARLNSLDGQMIDTRDRLSVRDDQLSNIQIRLDGLGSLVTDLQERRTFVEHEATRVDDLLRDINVAKEmlreacDLQKEVR 494
                 55555...7899**************************************************************9999555566665556689999999 PP

  MscS_porin 152 talqaelaalea 163
                 ++  ael+a++a
  CDO70160.1 495 MQMAAELEAIKA 506
                 999999999886 PP

>> Borrelia_REV  Borrelia burgdorferi REV protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.6e-05      0.12      73     116 ..     469     512 ..     439     528 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                   HHHHTTT---H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Borrelia_REV  73 lkedlkditnakelkekllnlqklfqeklaaklaalkavkvdie 116
                   + + l+di  ake+     +lqk  + ++aa l+a+ka +v+  
    CDO70160.1 469 VDDLLRDINVAKEMLREACDLQKEVRMQMAAELEAIKALRVEAT 512
                   556699**********************************9865 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.9e-05     0.085     394     532 ..     413     546 ..     213     550 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.9e-05
    Macoilin 394 kkdalvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekrLkeekearaslekqLaee 492
                 +k  l  L++++   +  L+    + ++++ +++ l s    l ++lq+ +   +   t++++l+      k  l +    L+  ke r+++ + L+  
  CDO70160.1 413 TKARLNSLDGQMIDTRDRLSVRDDQLSNIQIRLDGLGS----LVTDLQERRTFVEHEATRVDDLLRDINVAKEMLREA-CDLQ--KEVRMQMAAELEAI 504
                 55555566666666666666666666666666666655....777777777777777777777777777776665543.2344..45566666666666 PP

    Macoilin 493 kkrkkeeeeta..aravalaaasrsecteslkskkreleaei 532
                 k  + e+ +    a+ava a+a   e t+slk+k+ +++  i
  CDO70160.1 505 KALRVEATAAVaeAKAVASAVAVDAEATKSLKRKRDDMDGAI 546
                 666665555441145666677777*************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4001.90
//
Query:       CDO70161.1  [L=377]
Description: hypothetical protein BN946_scf185009.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-74  248.6   0.0    1.1e-73  248.1   0.0    1.2  1  ATP_bind_1   Conserved hypothetical ATP binding protein
    2.7e-05   23.8   0.0    0.00036   20.1   0.0    2.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    8.6e-05   22.4   2.0     0.0016   18.2   0.0    2.5  2  AAA_24       AAA domain
    0.00018   20.6   0.0      0.075   12.0   0.0    2.2  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
    0.00026   21.1   0.0     0.0037   17.3   0.0    2.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0028   16.9   0.3       0.11   11.6   0.0    2.5  3  G-alpha      G-protein alpha subunit
     0.0032   17.4   0.2       0.88    9.5   0.1    2.8  3  RsgA_GTPase  RsgA GTPase
      0.004   17.3   0.0      0.012   15.8   0.0    1.9  1  AAA_33       AAA domain
     0.0055   16.6   0.0      0.011   15.7   0.0    1.5  1  NACHT        NACHT domain
     0.0066   16.0   0.1      0.035   13.6   0.0    2.1  2  FeoB_N       Ferrous iron transport protein B
     0.0095   16.5   0.0      0.096   13.2   0.0    2.3  2  AAA_18       AAA domain
  ------ inclusion threshold ------
      0.034   13.3   0.0      0.076   12.2   0.0    1.5  1  NB-ARC       NB-ARC domain
      0.053   13.2   0.0      0.099   12.4   0.0    1.4  1  AAA_30       AAA domain
      0.055   12.8   0.0       0.14   11.4   0.0    1.6  1  Zeta_toxin   Zeta toxin
      0.056   13.3   0.0       0.27   11.1   0.0    2.0  2  NTPase_1     NTPase
      0.061   12.2   0.0      0.088   11.7   0.0    1.2  1  AAA_PrkA     PrkA AAA domain
      0.067   13.6   0.0       0.29   11.5   0.0    2.0  2  AAA_16       AAA ATPase domain
      0.068   12.8   1.6        1.5    8.5   0.0    2.3  2  GrpE         GrpE
       0.07   13.2   0.1        6.9    6.7   0.0    2.3  2  DUF87        Helicase HerA, central domain
      0.072   13.1   0.0       0.22   11.5   0.0    1.8  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.095   11.9   0.0       0.14   11.4   0.0    1.5  1  KAP_NTPase   KAP family P-loop domain
       0.16   11.4   0.0        1.2    8.5   0.0    2.3  3  Arf          ADP-ribosylation factor family
       0.16   11.6   0.0        1.3    8.6   0.0    2.3  2  SRP54        SRP54-type protein, GTPase domain
       0.16   11.5   0.2        1.2    8.7   0.2    2.2  1  cobW         CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.1   0.0   1.4e-76   1.1e-73       2     238 ..      26     273 ..      25     276 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.1 bits;  conditional E-value: 1.4e-76
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrg..rsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeeleke.ed.dyllf 96 
                 +G+aG+GK+tfv++++++l+++g   s++v+NLDPA+ ++p++a++dir++i++ +vm++++lgpng++ +al+++++++d++ + +ek+ ++ +y+++
  CDO70161.1  26 IGMAGAGKSTFVQRINSYLHSKGpeSSPYVINLDPAVANTPFDANIDIRDTIDYHKVMKEYNLGPNGGILTALNLFTTKFDQVLDIVEKRaDTvEYVIL 124
                 8********************9844679************************************************************9966699**** PP

  ATP_bind_1  97 DtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealslllekee. 194
                 DtPGQie+ft+s+s+a+i+++ +s+ ++vv y++D++r t p++f+s++l+a+s++++++lP++ v+nk+D+    +++++e+++d+ea++++l +++ 
  CDO70161.1 125 DTPGQIEIFTWSASGAIITDAVASSLPTVVAYIIDTPRTTAPATFMSNMLYACSILYKTKLPFILVFNKTDVQP--HDFAIEWMQDFEAFQAALASHKg 221
                 ************************************************************************66..99****************99999 PP

  ATP_bind_1 195 ........ekykklaeaiaelleefalvlrflplssekeesiedllslidea 238
                          ++++l+++++ +l+ef+ +l  + +ss ++++i+++++++d++
  CDO70161.1 222 ttddegepTYMNSLMNSMSLVLDEFYKHLTAVGVSSVTGDGIKEFFDAVDAS 273
                 9************************************************975 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.8e-07   0.00036       4     190 ..      21     272 ..      18     275 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.8e-07
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH..HHHST........................HCHSHHHHHHTSCSSCEEEEEE............ CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgeka..eeerv........................lDtlkeErergiTiksaaisle............ 64 
                 + i++ig   +GK+T++ r+  +++    +++    +                            +                    e            
  CDO70161.1  21 IVIITIGMAGAGKSTFVQRINSYLHSKGPESSPYviN---LdpavantpfdanidirdtidyhkvMK-------------------Eynlgpnggilta 97 
                 5688999999**********99999988844433441...133334445555555555533333333...................3445555555555 PP

                 ................TTCSSEEEEEEEESSSGG.GHHHHHHH.......HHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGS CS
    GTP_EFTU  65 ................ketkkylinliDtPGHvd.Fskevirg.......lrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDr 134
                                 k+ ++ ++ ++DtPG ++ F+   + +        +   ++  ++d  +       +++      ++ k ++p+i++ NK D 
  CDO70161.1  98 lnlfttkfdqvldiveKRADTVEYVILDTPGQIEiFTWSASGAiitdavaSSLPTVVAYIIDTPRTtapatFMSNMLYACSILYKTKLPFILVFNKTDV 196
                 55556668999999977999*************966655444433222222222333344444433555558888899999999*************** PP

                 T....HHHHHHHHHHHHHHHHHH.......HHHHHHHHHTTT...................TTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 135 l....kaelkeiveevkqklsrk.......eeklekygekge...................kevpvvfgSalkgegvktllealve 190
                        e  +  e+ +  l ++                  e                   k  + v +S+++g+g+k++++a++ 
  CDO70161.1 197 QphdfAIEWMQDFEAFQAALASHkgttddeG----------EptymnslmnsmslvldefyKHLTAVGVSSVTGDGIKEFFDAVDA 272
                 9555433333444444444433333334440..........13445566666667777777899*******************975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.1e-06    0.0016       3      78 ..      21     131 ..      19     139 .. 0.85
   2 ?    2.9   0.3      0.11        79      37      91 ..     312     366 ..     290     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-06
      AAA_24   3 lkiliyGpsgiGKTtlakel.........gpkplfidtekGlksldadkfpdieswedfldevvel..........................aaelady 66 
                 + i+ +G +g+GK+t++ ++         + +p +i+++  ++++ +d   di+  +d  + ++e                           ++  ++ 
  CDO70161.1  21 IVIITIGMAGAGKSTFVQRInsylhskgpESSPYVINLDPAVANTPFDANIDIRDTIDYHKVMKEYnlgpnggiltalnlfttkfdqvldivEKRADTV 119
                 678999**********************999*******************99995555555555556668888888888888888888999999999** PP

      AAA_24  67 ktlviDtidele 78 
                 + +++Dt +++e
  CDO70161.1 120 EYVILDTPGQIE 131
                 ******988775 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
      AAA_24  37 sldadkfpdieswedfldevvelaaeladyktlviDtideleelclaevirqnek 91 
                 sld  k p + + + +  +++e ++e++d ++ +iD  ++++     +v r+ ++
  CDO70161.1 312 SLDREKNPAAAAADRWDPTAEEAEDEDDDVDVNIIDRSEDAWPGQYIDVTRMRPR 366
                 44555555555666677777777******************99888877777766 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0001     0.075      32      69 ..      23      62 ..      11      66 .. 0.82
   2 !    6.5   0.0    0.0048       3.6     206     262 ..     251     307 ..     187     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
                EEEEE-TTSSHHHHHHHHHHHHHCTT--EE..EEEE---- CS
        MeaB 32 vGltGvPGaGkstlvealglelrrrGkrva..vlavDPss 69
                +   G+ GaGkst+v+++   l ++G   +  v+ +DP+ 
  CDO70161.1 23 IITIGMAGAGKSTFVQRINSYLHSKGPESSpyVINLDPAV 62
                44569*********************87654589999975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0048
                 EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        MeaB 206 kvlktsavegeGidelvdaieehrevlkktGllekrrrerakeelrelvedellkrv 262
                   + +s+v+g+Gi+e++da+   r+  ++  l e +r   + e+  + ++++ l+r+
  CDO70161.1 251 TAVGVSSVTGDGIKEFFDAVDASRTEYEREYLPELQRARESREKSLKAAKEDSLNRF 307
                 4567899**************999988888776655554444444555555555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     5e-06    0.0037       2     114 .]      23     193 ..      22     193 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5e-06
                 EEEEESTTSSHHHHHHHHHT..............S.TEEESSSTTSSSSEEEEEEEETTEE...................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg..............e.kaivsdkpgtTrdinegrvklkgke...................................... 47 
                 ++ +G+  +GKSt+++++                +    v+++p+     ++ +++++  +                                      
  CDO70161.1  23 IITIGMAGAGKSTFVQRINSylhskgpesspyviNlDPAVANTPFDANIDIRDTIDYH--Kvmkeynlgpnggiltalnlfttkfdqvldivekradtv 119
                 56799**********9998545555555544443235566666666555555555533..133456677777888888888888888888888888888 PP

                 .EEEEECGGCSS...HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHH......TTSEEEEEEES CS
    MMR_HSR1  48 .ielvDtpGlie...gaseekglgkaflaleeadlillvvdaseeklkpldeeleellee......akkplilvlnk 114
                  ++++DtpG ie    + ++  +++a+++     ++++++d   ++ +p    + ++l        +k p+ilv+nk
  CDO70161.1 120 eYVILDTPGQIEiftWSASGAIITDAVASSLP-TVVAYIIDTP-RTTAPA-TFMSNMLYAcsilykTKLPFILVFNK 193
                 8********87655455556677888877665.9*******55.323333.4444444334444559999*****98 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00015      0.11      13      49 ..      12      47 ..       2      64 .. 0.77
   2 ?    2.4   0.1     0.091        68     268     281 ..     183     196 ..     174     200 .. 0.84
   3 ?   -2.3   0.0       2.6   1.9e+03     157     176 ..     261     283 ..     206     320 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                XXXXXXXE..EEEEEEEESTTSSHHHHHHHHH.HHCS- CS
     G-alpha 13 aerkarkkkrevkllllGqseSGKsTilkqlk.llykk 49
                ae++++  k+++ ++ +G ++ GKsT+++ +   l+ k
  CDO70161.1 12 AESSEK--KKPIVIITIGMAGAGKSTFVQRINsYLHSK 47
                344444..4599******************99666655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.091
                 TTSEEEEEEE-HHH CS
     G-alpha 268 kntpiiLflnKlDi 281
                  + p+iL++nK+D+
  CDO70161.1 183 TKLPFILVFNKTDV 196
                 5789*********6 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.6
                 TTHHHHHCT..HHHHCST.T--- CS
     G-alpha 157 dnaeyFldd..leritsp.dYlp 176
                 d+++ F+d    +r + + +Ylp
  CDO70161.1 261 DGIKEFFDAvdASRTEYErEYLP 283
                 44444444311222222233333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1    0.0012      0.88      98     123 ..      19      44 ..       2      53 .. 0.76
   2 ?   -2.4   0.0       5.3   3.9e+03     153     160 ..     121     128 ..     102     132 .. 0.75
   3 ?    4.9   0.0      0.03        22      42      83 ..     180     220 ..     148     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
                  TTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpel 123
                  k  +++ +G  G+GKSt++ ++++ l
   CDO70161.1  19 KPIVIITIGMAGAGKSTFVQRINSYL 44 
                  44577889************998865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.3
                  EEEESS-S CS
  RsgA_GTPase 153 glliDtPG 160
                   ++ DtPG
   CDO70161.1 121 YVILDTPG 128
                  57999*99 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.03
                  HHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE-- CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeeeeleelkeelealgyevllvs 83 
                  + +++++ ++v+nK+D+  ++  + e+++++ea++ ++   +
   CDO70161.1 180 LYKTKLPFILVFNKTDVQPHDF-AIEWMQDFEAFQAALASHK 220
                  5688999**********99988.8888888888876665554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-05     0.012       1      19 [.      22      40 ..      22     130 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +++++G++G+GKst+++r+
  CDO70161.1 22 VIITIGMAGAGKSTFVQRI 40
                89***************97 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05     0.011       2      41 ..      22      59 ..      21      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEE CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFfls 41
                ++i  G aG GK+t++q++ + + ++ +++   ++v+ l 
  CDO70161.1 22 VIITIGMAGAGKSTFVQRINSYLHSKGPES--SPYVINLD 59
                68899******************9999888..57777665 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.5   1.1e+03       2      20 ..      22      40 ..      21      45 .. 0.84
   2 !   13.6   0.0   4.7e-05     0.035      45     117 ..     117     196 ..     102     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.5
                EEEEEESTTSSHHHHHHHH CS
      FeoB_N  2 tvalvGnpnvGkttlfnal 20
                 ++++G   +Gk+t++ ++
  CDO70161.1 22 VIITIGMAGAGKSTFVQRI 40
                57899*********99877 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.7e-05
                 TTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEE.......GGGHHHHHHHHHHHHHTTSSEEEEEETHHH CS
      FeoB_N  45 kgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvd.......atnlernLyLtlqllelgvpvvlalnmide 117
                 ++ e+ i+D PG  ++ + s    + +d ++++ p vv  ++d       at +   Ly    l  +++p++l++n++d+
  CDO70161.1 117 DTVEYVILDTPGQIEIFTWSASGAIITDAVASSLPTVVAYIIDtprttapATFMSNMLYACSILYKTKLPFILVFNKTDV 196
                 457899*************************************5554444466888999999999************997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00013     0.096       1      64 [.      23      95 ..      23     132 .. 0.75
   2 ?    0.2   0.0       1.4   1.1e+03      46     100 ..     191     251 ..     174     254 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe........aldeskrldedkldklldal 64
                I+  G++G+GK+t+ +++++ l++ g +++ ++ + ++   ++p+         +d +k+++e +l  +  +l
  CDO70161.1 23 IITIGMAGAGKSTFVQRINSYLHSkGPESSPYVINLDPAVANTPFdanidirdTIDYHKVMKEYNLGPNGGIL 95
                7889**************8888778999999999999999999997766666555555555555555555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.4
      AAA_18  46 ldeskrldedkldklldaleenss........aleegknlvidghlaeleseaakdikkvvLt 100
                 ++++++   d+  ++++ +e+  +        + +eg++ ++ ++++ +    + ++k  +Lt
  CDO70161.1 191 FNKTDVQPHDFAIEWMQDFEAFQAalashkgtTDDEGEPTYMNSLMNSMSLVLDEFYK--HLT 251
                 5566666677777777777777767777777877888888999998888888887777..555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0001     0.076      19      43 ..      19      43 ..      11      52 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
                CSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 19 qslvvalvGmgGvGKttlakqilnk 43
                + +v+   Gm+G GK+t ++ i++ 
  CDO70161.1 19 KPIVIITIGMAGAGKSTFVQRINSY 43
                44678889**************986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.099      16      46 ..      18      48 ..       8      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaag 46
                ++  v +  G AG+GK+t ++ ++  ++++g
  CDO70161.1 18 KKPIVIITIGMAGAGKSTFVQRINSYLHSKG 48
                555678899**************99999887 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.14      10      42 ..      14      46 ..       7      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
  Zeta_toxin 10 ypsqerPklillgGqpGAGKselaellkdeler 42
                + ++++P++i+  G  GAGKs+  + ++ +l++
  CDO70161.1 14 SSEKKKPIVIITIGMAGAGKSTFVQRINSYLHS 46
                34679******************9999988873 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00037      0.27       3      27 ..      23      48 ..      21      52 .. 0.87
   2 ?   -0.9   0.0       1.8   1.3e+03      77     117 ..     101     140 ..      90     164 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00037
                EEE.--TTSSHHHHHHHHHHHH...G CS
    NTPase_1  3 fiT.GppGvGKtTlvkkvlellkssg 27
                +iT G+ G GK+T+v+++ + l+s+g
  CDO70161.1 23 IITiGMAGAGKSTFVQRINSYLHSKG 48
                55559*****************9987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.8
                 -HHHHHHHHHHHHHHHHHHH-EEEE---STTGGG-HHHHHH CS
    NTPase_1  77 dvesfeelalealrkalseadviviDEiGkmElkskkfkea 117
                 ++++f+++ l++++k   + + +++D  G++E ++ + + a
  CDO70161.1 101 FTTKFDQV-LDIVEKRADTVEYVILDTPGQIEIFTWSASGA 140
                 56677776.78888877888899999999999987665544 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012     0.088      79     130 ..      10      67 ..       7      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
    AAA_PrkA  79 aaaqrleerkqilyl.lGPvggGksslverlkklleaa....piyalegsP.vfeePl 130
                 +aa+  e++k i+ + +G  g+Gks++v+r+ + l+++    + y+++  P v + P+
  CDO70161.1  10 SAAESSEKKKPIVIItIGMAGAGKSTFVQRINSYLHSKgpesSPYVINLDPaVANTPF 67 
                 68888999998765439******************99887777799987773455555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00039      0.29      26      84 ..      22      85 ..       9     219 .. 0.68
   2 ?   -0.3   0.1       1.7   1.3e+03      93     114 ..     284     299 ..     240     348 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00039
      AAA_16 26 lvllsGesGvGKsslvrellralekd...........ggiflrgkcdqlesaipysalaqalareellrq 84
                +++ +G++G GKs+ v+++  +l  +           +  ++++ +d +      + + ++++ ++++++
  CDO70161.1 22 VIITIGMAGAGKSTFVQRINSYLHSKgpesspyvinlDPAVANTPFDAN------IDIRDTIDYHKVMKE 85
                34446***************99988878774444444444444444444......345555555555555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.7
      AAA_16  93 eleawrekleealaavpelaga 114
                 el+++re  e++l+      +a
  CDO70161.1 284 ELQRARESREKSLK------AA 299
                 23333333333322......11 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0019       1.5      63     118 ..     200     262 ..     192     270 .. 0.82
   2 ?    2.8   1.3      0.11        83      23      68 ..     265     311 ..     261     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHC...HHH-HH......HHHHHHHHHHHHHHHHHHHTT-EE---TT CS
        GrpE  63 kfakdLLpvlDnleralksak.eneeek......slleGvemtlkqllkiLekhgvekiepkg 118
                 +fa + ++ +++++ al+s+k ++++e       sl++ ++++l+++ k L   gv  +   g
  CDO70161.1 200 DFAIEWMQDFEAFQAALASHKgTTDDEGeptymnSLMNSMSLVLDEFYKHLTAVGVSSVTGDG 262
                 78888889999**********8444444689999**********************9998773 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
                 CHHHCTTSCCCCCCTT.TTTTTTHHHHHHHHHHHHHHHHHHHHHHHH CS
        GrpE  23 elekevkelkekllrl.laefenlrkrtekekeeakkfaiekfakdL 68 
                 e+ + v++   +++r+ l e++ +r+  ek +++ak++++ +f+kdL
  CDO70161.1 265 EFFDAVDASRTEYEREyLPELQRARESREKSLKAAKEDSLNRFMKDL 311
                 555666666666666536799999*********************98 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0093       6.9      29      47 ..      26      44 ..      24      60 .. 0.82
   2 ?    4.3   0.1     0.051        38     152     209 ..     284     349 ..     218     361 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0093
       DUF87 29 lgsTGsGKSntvavLleel 47
                +g++G+GKS++v  + + l
  CDO70161.1 26 IGMAGAGKSTFVQRINSYL 44
                69**********9987665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.051
       DUF87 152 kekeelrklknqaiarlldkledllrkggsf........snsstdliallleklekegkitiidls 209
                 + ++ +++  ++++a+++d+l++++++ +++        +++  d++a+  e+++++  ++iid s
  CDO70161.1 284 ELQRARESREKSLKAAKEDSLNRFMKDLSLDreknpaaaAADRWDPTAEEAEDEDDDVDVNIIDRS 349
                 333456666777788888888888888888877778888788888888888888888888888877 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0003      0.22       9      51 ..       9      53 ..       1      57 [. 0.71
   2 ?   -2.4   0.0         6   4.5e+03      95     106 ..     201     212 ..     191     224 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
                HHHHHHHHCH.TEEEEEEESTTSSHHHHHHHHHHHTT--.----T CS
        TsaE  9 algkklakal.gdvilLeGdLGaGKTtlvrglakalgve.evkSP 51
                + +++  ++    vi+  G  GaGK+t+v+ + + l+ + + +SP
  CDO70161.1  9 SSAAESSEKKkPIVIITIGMAGAGKSTFVQRINSYLHSKgPESSP 53
                444444443324568889***************999888666666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6
                 EEEETGGGGCCC CS
        TsaE  95 vlvEWpekleel 106
                 +++EW + +e++
  CDO70161.1 201 FAIEWMQDFEAF 212
                 679999997654 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.14      18      68 ..      18      68 ..      11     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  KAP_NTPase 18 atpivvgLygkWGsGKssllnkledelkefakpvrflfaefnawsfkggdd 68
                ++piv+   g  G+GKs++++++ ++l+++  + +  +++++++ +++  d
  CDO70161.1 18 KKPIVIITIGMAGAGKSTFVQRINSYLHSKGPESSPYVINLDPAVANTPFD 68
                678888888888******************555566788888888776544 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017       1.2       8      35 ..      14      41 ..       7      53 .. 0.83
   2 ?   -2.8   0.0       5.1   3.8e+03     114     128 ..     183     197 ..     153     202 .. 0.67
   3 ?   -0.5   0.0         1   7.5e+02     146     171 ..     247     270 ..     228     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                GTT.TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  8 lklkkkelrilllGLDnaGKtTilkklk 35
                  +kkk + i+ +G+ +aGK+T +++++
  CDO70161.1 14 SSEKKKPIVIITIGMAGAGKSTFVQRIN 41
                455688999***************9987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
                 TTSEEEEEEE-TTST CS
         Arf 114 kevallvlaNKqDlp 128
                  + +++++ NK D++
  CDO70161.1 183 TKLPFILVFNKTDVQ 197
                 467888899999975 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1
                 SSSSSEEEEEEBTTTTBTHHHHHHHH CS
         Arf 146 kgkrkleiqkcsavkgeglkeglewl 171
                    ++l+ +++s v+g+g+ke ++ +
  CDO70161.1 247 Y--KHLTAVGVSSVTGDGIKEFFDAV 270
                 4..67777888999999999888765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0018       1.3       2      34 ..      21      55 ..      20      61 .. 0.81
   2 ?   -0.2   0.0      0.86   6.4e+02      78      96 ..     113     131 ..     103     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
                EEEEEEESTTSSHHHHHHHHHHHHHHT..TS-EEE CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallkke..gkkvll 34
                 vi+ +G+ GaGK t + ++  +l+++  + ++ +
  CDO70161.1 21 IVIITIGMAGAGKSTFVQRINSYLHSKgpESSPYV 55
                68999******************999954455555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.86
                 HHHHTTSSEEEEEE--SST CS
       SRP54  78 kakeekidvvlvDTaGrlq 96 
                 +++++ +++v++DT G+ +
  CDO70161.1 113 EKRADTVEYVILDTPGQIE 131
                 45566899*******9875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0016       1.2       2     162 ..      22     206 ..      20     216 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0016
                 EEEEEESTTCCHHHHHHHHH....CT--SS-EEEEESS..-SSCHCCCCCCHCCCT.....EEEET...TTTECCH...CTT-HHHHHHHHHHHHTT-S CS
        cobW   2 vtvltGflGsGKTtLlnhll....enraglklavivNe..fgevsiDaellretgve....ivele...nGciCct...lredllkelealeereerld 84 
                 v++  G  G+GK+t+++++     ++  + +  vi  +  + ++  Da++  +++      + e +   nG+i  +     +++ ++l+ +e+r + ++
  CDO70161.1  22 VIITIGMAGAGKSTFVQRINsylhSKGPESSPYVINLDpaVANTPFDANIDIRDTIDyhkvMKEYNlgpNGGILTAlnlFTTKFDQVLDIVEKRADTVE 120
                 455569999999999998877766566666666766553234466666664333222233433322223666655424456788888888888889999 PP

                 EEEEEECTTTTHHHHHTTSHHHHH...CCCECEEEEEEETTTH........CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHH CS
        cobW  85 viliEttGlaePapvafteeelks...dltldavvavvDaknl.......eaeeekieekaedqlaaadllvlnKtDlldeeallekl 162
                 ++++ t G  e  ++  +   +++   +   ++v +++D  ++       ++     + +++ +l +  +lv+nKtD+ ++++ +e +
  CDO70161.1 121 YVILDTPGQIEIFTWSASGAIITDavaSSLPTVVAYIIDTPRTtapatfmSNMLYACSILYKTKLPF--ILVFNKTDVQPHDFAIEWM 206
                 9999999988888885553333331103334456678888666444443322333333333333332..6789999999988765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2608.64
//
Query:       CDO70162.1  [L=293]
Description: hypothetical protein BN946_scf185009.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-72  242.1   0.0    7.3e-72  241.9   0.0    1.0  1  Pkinase        Protein kinase domain
    1.9e-32  112.6   0.0    2.6e-32  112.1   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00019   21.4   0.3     0.0044   17.0   0.2    2.1  2  APH            Phosphotransferase enzyme family
    0.00038   19.5   0.3     0.0043   16.0   0.3    2.0  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.019   14.3   0.0      0.096   12.0   0.0    2.0  2  Kinase-like    Kinase-like
      0.027   13.5   0.0      0.052   12.6   0.0    1.4  1  Seadorna_VP7   Seadornavirus VP7
      0.082   12.3   0.6       0.22   10.8   0.6    1.6  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.082   12.5   0.1       0.13   11.9   0.1    1.3  1  RIO1           RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.0   3.3e-75   7.3e-72      10     264 .]      11     287 ..       4     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 3.3e-75
                 ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS--HHHHHHHH CS
     Pkinase  10 GsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle....rkgslseeeakkia 104
                 G++G+Vyka++ +t++ vA+Kki+ e +++   ++++rEi++lk+lk +n+vrl+++++ +++lylv+e+++ + l++++e    +++ +++e +kk++
  CDO70162.1  11 GTYGVVYKARDINTNRVVALKKIRLEAEDEGVPSTAIREISLLKELKDENVVRLLDIVHADQKLYLVFEFLDVD-LKRYMEncnkAHRPITPEIVKKFT 108
                 89**********************************************************************77.88888888778888********** PP

                 HHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHH.SS-STTTS CS
     Pkinase 105 kqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyellt.gkppfsge 200
                 +q+ +gl y+Hs++i+HrDlKp+N+Lid++++lK++DFGla+ +    + +t++v+t +Y+APEvl ++++ys+++D+Ws+G+il+e+ + g+p+f+  
  CDO70162.1 109 HQLTSGLLYCHSHRILHRDLKPQNLLIDKDDNLKLADFGLARAFGIPMRtYTHEVVTLWYRAPEVLlGSRHYSTAIDMWSVGCILAEMCArGHPLFP-- 205
                 ********************************************988777****************999*******************872566677.. PP

                 SHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS......................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 201 kgkekvekeldqlekilkilg.etkeklpeasei......................seeakdllkkllkkdpkkRltaeellqhpyl 264
                  g++    e+dq++ki+++lg +++e +p  +++                      + + +dllk +l++d +kR++a+ +l hpy+
  CDO70162.1 206 -GDS----EIDQIFKIFRVLGtPNTEIWPGLQDLpdykpsfphwspqdlrdhvpslDADGIDLLKLMLTYDTSKRISAKRALLHPYF 287
                 .655....9************87788899999999999999999999********99*****************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.1e-35   2.6e-32      10     209 ..      11     207 ..       4     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.1e-35
                  ESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..CTTTSBHHH CS
  Pkinase_Tyr  10 GafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..ekekltlkd 104
                  G++G V++++      +++  Va+K+++ ea++e   +  ++e++++k+lk +n+v+ll ++  +++l++v+e+++  dL+ ++++   +++++t + 
   CDO70162.1  11 GTYGVVYKARDI----NTNRVVALKKIRLEAEDEGvPSTAIREISLLKELKDENVVRLLDIVHADQKLYLVFEFLDV-DLKRYMENCnkAHRPITPEI 103
                  899*****9988....8999*******98777776478899**********************************86.9*****98733567899999 PP

                  HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 105 llsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftl 201
                  + +f++q+ +G+ y +s++++Hrdl  +N L+++++  k++DfGLar+      +++ +++ + + + apE+l  ++ ++++ D+Ws G +l E++  
   CDO70162.1 104 VKKFTHQLTSGLLYCHSHRILHRDLKPQNLLIDKDDNLKLADFGLARAF--GIPMRTYTHEVVTLWYRAPEVLLGSRhYSTAIDMWSVGCILAEMCAR 199
                  99**********************************************9..55566667788889999***9876655******************** PP

                  SSGTTTTS CS
  Pkinase_Tyr 202 gespypgl 209
                  g+  +pg 
   CDO70162.1 200 GHPLFPGD 207
                  *9877765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.061   1.4e+02      25      97 ..      30     106 ..      16     113 .. 0.67
   2 !   17.0   0.2     2e-06    0.0044     166     197 ..     121     150 ..     114     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.061
                 EEEE-TTS-HHHHH....HHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS..HHHHHHHHHHHHH CS
         APH  25 lrrnpparaaeeir....revallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr..klsaaqlpellea 97 
                 l+ ++ + ++e ++    re  ll+ L +    v ++l++   d+ ++l+f+++     r +++  k + +++pe++ +
  CDO70162.1  30 LKKIRLEAEDEGVPstaiREISLLKELKDE--NVVRLLDIVHADQKLYLVFEFLDVDLKRYMENcnKAHRPITPEIVKK 106
                 555555533333332222555566666666..56799998889999999999998888888888888888888887766 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2e-06
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +++lH+Dl+p+Nll+d+dd+    + Df++a+
  CDO70162.1 121 HRILHRDLKPQNLLIDKDDNLK--LADFGLAR 150
                 789*************777766..89999886 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   1.9e-06    0.0043     116     257 ..      16     152 ..       3     181 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.9e-06
  Haspin_kinase 116 vyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev........k 201
                    vy++++  +++ v+lK+i le+ ++   s  + + e   lk +k      +++l d v  ++          l+l++++   dL++         +
     CDO70162.1  16 VYKARDinTNRVVALKKIRLEAEDEGVPS--TAIREISLLKELKDE---NVVRLLDIVHADQ---------KLYLVFEFLDVDLKRYmencnkahR 97 
                    56655554555556666666655554444..344444444444433...3333333333333.........4555555555666554332121111 PP

  Haspin_kinase 202 lkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                      + + +++  +q ++ L     + +  HRdL+ +n L+dk  n  l d+ l+R+ 
     CDO70162.1  98 PITPEIVKKFTHQLTSGLLYC-HSHRILHRDLKPQNLLIDKDDNLKLADFGLARAF 152
                    122334566667776666554.456788**************************96 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.23   5.2e+02      22      50 ..      10      38 ..       4      80 .. 0.79
   2 ?   12.0   0.0   4.3e-05     0.096     158     266 ..     116     219 ..      72     226 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.23
  Kinase-like 22 kgdrsvvfevkdqetgeplavkvfllpse 50
                  g  +vv++++d +t+  +a+k   l++e
   CDO70162.1 10 VGTYGVVYKARDINTNRVVALKKIRLEAE 38
                 5667899*******999999998777665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.3e-05
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl...sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                   + +++ ++h +++++nll d++  l+l +f+  +  g  ++      v   +  pE+l            +++ ++d W +G     + ++  Pl  
   CDO70162.1 116 LYCHSHRILHRDLKPQNLLIDKDDNLKLADFGLARAFGIPMRTythEVVTLWYRAPEVLLG--------SRHYSTAIDMWSVGCILAEMCARGHPLFP 205
                  4678999************************988888877775321223356778887654........2357889999***9998888888888877 PP

  Kinase-like 253 ateeakeewkfklc 266
                    +e+ + +k +++
   CDO70162.1 206 GDSEIDQIFKIFRV 219
                  77777776666555 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.052     134     186 ..      90     145 ..      85     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
  Seadorna_VP7 134 ekCykirvltvniiva....glkd.LmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   e+C+k +   +  iv      l + L   h  s+ +lh D +p+nl+ Dk  +lkl D
    CDO70162.1  90 ENCNKAHRPITPEIVKkfthQLTSgLLYCH--SHRILHRDLKPQNLLIDKDDNLKLAD 145
                   667665444333333300002322134445..889*********************99 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6    0.0001      0.22      57     166 ..      45     146 ..      30     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
         Kdo  57 ravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae....laeelkrallkavgrliaklhragvnHadlyaknill 151
                 +a rE++llk+L+++ v  +  +  + +k        l+ e l+   dL+ ++++ ++    +  e  ++  +++       h+  + H+dl ++n+l+
  CDO70162.1  45 TAIREISLLKELKDENVVRLLDIVHADQKL------YLVFEFLD--VDLKRYMENCNKahrpITPEIVKKFTHQLTSGLLYCHSHRILHRDLKPQNLLI 135
                 678888888888887765544444443333......46666655..34544444433333348889999999999999999****************** PP

         Kdo 152 qqeeeeeaeiwliDl 166
                 ++++    ++ l D+
  CDO70162.1 136 DKDD----NLKLADF 146
                 *998....5555555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.7e-05      0.13      51     150 ..      42     147 ..       5     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHHHHHHHHHTT.--S--EEEEETT.EEEEE--E.ETTEEGGBHHHCG-HHHHHHHHHHHHHHHH...HHHHTSTEEESS-STTSEEEETT. CS
        RIO1  51 vklwaekEfrnLkrleeag.vpvPkpielkrh.vlvmefig.edgvaapklkdveeeeeaeelyeevleemr...klykeaglvHaDLSeyNvlvded. 142
                 v  +a +E++ Lk+l++++ v+  + ++  +   lv ef++ + +  + + ++++ +  + e++++  +++       + +++ H DL   N+l+d+d 
  CDO70162.1  42 VPSTAIREISLLKELKDENvVRLLDIVHADQKlYLVFEFLDvDLKRYMENCNKAH-RPITPEIVKKFTHQLTsglLYCHSHRILHRDLKPQNLLIDKDd 139
                 66788999999999999986788777777655269******43344444555555.44555555555554431103446789**************998 PP

                 EEEE--GT CS
        RIO1 143 kvviIDvs 150
                 ++ + D++
  CDO70162.1 140 NLKLADFG 147
                 88888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2175.95
//
Query:       CDO70163.1  [L=996]
Description: Copper radical oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-69  228.3  51.9    7.1e-20   71.0   9.9    4.3  4  WSC             WSC domain
    2.2e-28   99.1   0.0    5.3e-27   94.5   0.0    2.7  3  Glyoxal_oxid_N  Glyoxal oxidase N-terminus
    7.7e-15   55.0   2.3    2.4e-14   53.4   0.0    2.8  3  DUF1929         Domain of unknown function (DUF1929)
  ------ inclusion threshold ------
       0.02   15.2   0.9        6.4    7.2   0.0    3.9  3  DUF5122         Domain of unknown function (DUF5122) beta-pro
      0.046   13.7   1.1        3.7    7.7   0.0    4.1  5  Kelch_2         Kelch motif


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   9.9     2e-23   7.1e-20       1      81 [.      42     121 ..      42     122 .. 0.96
   2 !   61.1   5.0   2.3e-20   8.4e-17       2      82 .]     151     230 ..     150     230 .. 0.97
   3 !   61.6   8.0   1.7e-20   6.1e-17       1      82 []     272     352 ..     272     352 .. 0.96
   4 !   53.4   5.1     6e-18   2.1e-14       1      82 []     384     468 ..     384     468 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 2e-23
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 +lGC+td+  +r+l g++ ++++ mt+e+C++fC+++ +++agle  +eC+Cgn+l+++ ++a++s+Cn +C+Gd++++CG
  CDO70163.1  42 FLGCFTDQ-GARTLGGATFTNTTGMTVESCVSFCSSQDFNFAGLEFAQECWCGNELANGGTNATESDCNFACTGDANELCG 121
                 79****99.7888888889*************************************************************9 PP

  == domain 2  score: 61.1 bits;  conditional E-value: 2.3e-20
         WSC   2 lGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 lGCy+ds  + r l+ + + d   t+e C+++C ++++++ag+e  ++C+C + l+++ ++++ ++Cn++C+G+ss++CGg
  CDO70163.1 151 LGCYNDS-VNARVLSVGVNVDGPFTVEGCTTACFNNNFPLAGMEFAGQCFCDTGLENGGAPTPLADCNMPCNGNSSEFCGG 230
                 7******.799999999***************************************************************8 PP

  == domain 3  score: 61.6 bits;  conditional E-value: 1.7e-20
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 y +Cy d+    r ++++  +d+++t+++C ++C ++++++agle g +C+Cgn+l ++av+ ++++Cn++C G+s+++CGg
  CDO70163.1 272 YAACYVDN-AFGRIMSTQLPDDQKVTVQSCLTSCDSQNFTLAGLEFGVQCFCGNTLIDGAVPGEENTCNMACGGNSTEACGG 352
                 889***99.67788888999*************************************************************8 PP

  == domain 4  score: 53.4 bits;  conditional E-value: 6e-18
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassss...CnasCsGdssqtCGg 82 
                 y GC++++ +  r + ++  +++++t+e+C ++C+a gy+ ag e g++C+Cg+ ++ ++++   s+   Cn++CsGd+ ++CGg
  CDO70163.1 384 YKGCLQEGFNGARVFPNEIINTDNNTIEACLNQCAAFGYPAAGAEFGNQCFCGDITDVENNSPGFSDaseCNIACSGDPIHLCGG 468
                 89******9899999999999********************************99988887655444556**************8 PP

>> Glyoxal_oxid_N  Glyoxal oxidase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   1.5e-30   5.3e-27      55     240 .]     543     746 ..     534     746 .. 0.81
   2 ?   -1.1   0.0      0.24   8.5e+02     121     136 ..     783     798 ..     755     813 .. 0.76
   3 ?    0.4   0.0     0.087   3.1e+02     112     133 ..     834     855 ..     819     868 .. 0.76

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 1.5e-30
  Glyoxal_oxid_N  55 tnavrplkvltdtwcssgallad.G..tlvqtGGfk.dgerkvrllspc......eecdwvelke..elaekRwyatnqiLpdgrvivvGGrr.. 135
                     +++ r+++v+td++cs+g +l+d G  +lv  GG++ + +  vrl++p       ++ dw+e+ +  +l++ Rwy +  ++ +g+++vvGG    
      CDO70163.1 543 ERTWRTMHVKTDVFCSAGLVLPDkGarQLV-IGGWSlSSTFGVRLYTPDgspgvnGTNDWEENVDelSLQRGRWYPSALVMSNGSILVVGGEVgs 636
                     6789****************9984342455.56665166778*****97778888889****9885678899******************97511 PP

  Glyoxal_oxid_N 136 ....afsyefvpkeekseekavelpfLketedkeennLYPfvhllpdgnlfifankrsilldykknkvvrefpklpgg.....e.rnyPssgssv 220
                         + + e +p+ e    + + ++ L++t+    nnLYPf+h+lp gn+f+   +++ +l++ +   ++++p++pg      + r+yP  g++v
      CDO70163.1 637 ngapEPTLEILPTPE-GGPTYLFMDWLNRTD---PNNLYPFLHMLPSGNIFVGYYNEARILNPVTFDTIKTLPNMPGSvtsflAgRTYPLEGTAV 727
                     122255688888866.455556666666665...7*****************99999********************533333369********* PP

  Glyoxal_oxid_N 221 lLplklkeeaseaevlvCGG 240
                     l+p + +  +  + +lvCGG
      CDO70163.1 728 LFPQH-APYTDPITILVCGG 746
                     ***88.5778899******9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.24
  Glyoxal_oxid_N 121 qiLpdgrvivvGGrra 136
                     + Lpdg++++v G ++
      CDO70163.1 783 HALPDGTFLIVNGAQQ 798
                     78*********99887 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.087
  Glyoxal_oxid_N 112 aekRwyatnqiLpdgrvivvGG 133
                      ++ +++ +++Lpdgrv++ G 
      CDO70163.1 834 VARLYHSESTLLPDGRVLISGS 855
                     444444556789****999885 PP

>> DUF1929  Domain of unknown function (DUF1929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.38   1.4e+03      87      95 ..     142     150 ..     140     151 .. 0.88
   2 ?   -2.5   0.1       1.8   6.5e+03      58      79 ..     362     383 ..     352     384 .. 0.75
   3 !   53.4   0.0   6.6e-18   2.4e-14       5      96 .]     886     972 ..     882     972 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.38
     DUF1929  87 vpSvgkwVk 95 
                 vpSvg+wV 
  CDO70163.1 142 VPSVGQWVS 150
                 9*******6 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
     DUF1929  58 tgytvtvtaPpnanvapPGyym 79 
                 t++  ++ +P+ +n   PG ++
  CDO70163.1 362 TKNVTALPVPTAQNTSLPGQWV 383
                 3566778899999*****9986 PP

  == domain 3  score: 53.4 bits;  conditional E-value: 6.6e-18
     DUF1929   5 ssvptevkygetftvtvsv.ekeaeevkvslvrpgfvTHsvnmdqRlveLevsetgytvtvtaPpnanvapPGyymlFvvndgvpSvgkwVkv 96 
                 +  +++++yg+++t++v++ e ++++++vsl++       ++m++R+++ e+s +g+t+tvtaPpna v pPG+++l+v+++ +pS+++wV++
  CDO70163.1 886 TVDEQDWNYGGQYTIHVTLhEGTTDTMRVSLIAG------NSMGMRTIFPEFSCSGNTCTVTAPPNAFVSPPGWHQLWVLDGPTPSHSSWVRI 972
                 444566**********99966666777*****95......78*********98889***********************************97 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0018       6.4       6      32 ..     571     593 ..     570     593 .. 0.93
   2 ?    2.0   0.1     0.074   2.7e+02       2      18 ..     623     639 ..     623     644 .. 0.70
   3 ?    1.5   0.0      0.11   3.8e+02       2      11 ..     846     855 ..     845     858 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0018
     DUF5122   6 IlVaGsftsyngssdfalvRLnaDGsl 32 
                 ++++G++     ss f++  +++DGs+
  CDO70163.1 571 LVIGGWSL----SSTFGVRLYTPDGSP 593
                 79******....89***********95 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.074
     DUF5122   2 pDGKI.lVaGsftsyngs 18 
                 ++G+I +V+G+ +  ng 
  CDO70163.1 623 SNGSIlVVGGEVG-SNGA 639
                 6899978888777.5565 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
     DUF5122   2 pDGKIlVaGs 11 
                 pDG++l+ Gs
  CDO70163.1 846 PDGRVLISGS 855
                 9*******98 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.63   2.3e+03       5      42 ..     454     484 ..     452     488 .. 0.70
   2 ?    0.5   0.0      0.19   6.8e+02      11      35 ..     567     589 ..     555     593 .. 0.66
   3 ?    7.7   0.0     0.001       3.7       1      20 [.     614     633 ..     614     644 .. 0.87
   4 ?   -1.4   0.0      0.77   2.8e+03      14      25 ..     741     749 ..     741     771 .. 0.78
   5 ?   -3.0   0.0       2.4   8.8e+03       9      18 ..     845     854 ..     836     855 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.63
     Kelch_2   5 hsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42 
                 + ++++g+ i+++GG        s   ++ ++   + W
  CDO70163.1 454 CNIACSGDPIHLCGGE-------SRLQLYEWNGVMNDW 484
                 6678889999*****9.......666666666555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.19
     Kelch_2  11 ggkiyvvGGahtdnpnlsssdvhvl 35 
                 g + +v+GG+  ++++ +  ++++ 
  CDO70163.1 567 GARQLVIGGW--SLSSTFGVRLYTP 589
                 66889*****..5555555555544 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.001
     Kelch_2   1 rrgghsssvpggkiyvvGGa 20 
                 r+++++ ++++g i+vvGG 
  CDO70163.1 614 RWYPSALVMSNGSILVVGGE 633
                 699****************7 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.77
     Kelch_2  14 iyvvGGahtdnp 25 
                 i+v+GG+   n+
  CDO70163.1 741 ILVCGGS---NF 749
                 89****9...54 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.4
     Kelch_2   9 vpggkiyvvG 18 
                  p+g++++ G
  CDO70163.1 845 LPDGRVLISG 854
                 57*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6771.28
//
Query:       CDO70164.1  [L=1496]
Description: hypothetical protein BN946_scf185009.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-67  226.3   3.9      8e-67  225.7   3.9    1.2  1  SAC3_GANP  SAC3/GANP family
  ------ inclusion threshold ------
      0.066   13.8   0.3       0.24   12.0   0.1    2.0  2  Fer4_17    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   3.9   8.9e-71     8e-67       1     243 [.     143     398 ..     143     408 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 8.9e-71
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----HHHHHHHHHHHHHHTG..G..GTTTCHHHHHHHHHHHHH CS
   SAC3_GANP   1 GtCedmCPekEraeRevqkdlsrfEkekkktkkvdpskaVKeysRsaagqeeplpsdlRppevLkkTldYLlkeildreeeelaevydFiwDRtRaiRq 99 
                 GtC+dmCP +Er++Re++++l+++E+  + tk+vd+++aVK y+R aag +++lpsdlRpp+vLkkTldYL++++l re   ++++ydFi+DR Ra+R+
  CDO70164.1 143 GTCMDMCPRFERYRRERENNLDKWEV-IPGTKRVDHKRAVKIYER-AAG-DKTLPSDLRPPPVLKKTLDYLFHDLLVRE--GFSQTYDFIRDRSRAVRN 236
                 9************************7.889***************.555.5569**********************555..9***************** PP

                 HHHHTT--SHHHHHHHHHHHHHHHHHHHHHHHTTS.---CHHHHHHHHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTTT-HHHHHHHCTS-HHH CS
   SAC3_GANP 100 DltiqnlskaeaveilerivrfhilslhrlceepessfdeqqnleqLqkclqsLlelYddlrkkkeelpneaefrayylLlnlrdpdilrevqelpsei 198
                 D+t+q+ +++ a+e+++r++rfhil+lh+ +++p   f+  ++ +qL ++lqsL+e+Y+d+r  +++ p+e e+r y+ L+++rd++  +e  ++p+ei
  CDO70164.1 237 DFTMQHETGPLAIECHDRCARFHILALHLERDSP--RFSIALEEQQLMNTLQSLKEFYEDQR-GRYQAPTELEMRVYHRLIHIRDQKERHE--DIPDEI 330
                 ********************************99..8************************9.557******************9986665..99**** PP

                 HTSHHHHHHHHHHHHH--TT..................HHHHHHHHT.....TS-HHHHHHHGGGHHH CS
   SAC3_GANP 199 lkspevqlalklvaalqenn..................yvrffklvk.....evsylqacllerhfne 243
                 +++p ++l+ ++++ +q                     ++++ ++++      + yl ac+lerhf +
  CDO70164.1 331 RNHPVFRLTTAFRQRVQAVSapisknsklivdaeamqiFSQLADVLRrenniVMIYLVACILERHFGK 398
                 ******************999**************99988888888788777789***********75 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.6e-05      0.24       6      32 ..     143     173 ..     140     188 .. 0.79
   2 ?   -2.4   0.0      0.81   7.2e+03       8      31 ..     251     287 ..     249     301 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
     Fer4_17   6 gyClpeCpsyeaydnepkkllraakl....g 32 
                 g C+++Cp++e+y+ e+++ l ++++    +
  CDO70164.1 143 GTCMDMCPRFERYRRERENNLDKWEVipgtK 173
                 78***************99999988755432 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.81
     Fer4_17   8 ClpeCpsyea.............ydnepkkllraakl 31 
                 C + C ++ +             +  e+++l++ +++
  CDO70164.1 251 CHDRCARFHIlalhlerdsprfsIALEEQQLMNTLQS 287
                 8888888777555443333333333356666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 9491.95
//
Query:       CDO70165.1  [L=636]
Description: hypothetical protein BN946_scf185009.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-44  150.8   0.0    9.6e-44  150.1   0.0    1.3  1  DUF2347   Uncharacterized conserved protein (DUF2347)
    0.00012   20.9   0.0       0.94    8.1   0.1    3.1  2  Avl9      Transport protein Avl9
  ------ inclusion threshold ------
      0.052   13.5   0.0       0.17   11.8   0.0    1.7  2  SPA       Stabilization of polarity axis


Domain annotation for each model (and alignments):
>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0   1.6e-47   9.6e-44       2     277 ..      12     302 ..      11     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 1.6e-47
     DUF2347   2 flikFDvkkGytivwsksv.pdvelegvEfksLPSGihevsedlvyfvheeyyglsaFrqneveeeeernvkmysvGvlvdssnerlskawryaekLke 99 
                 f ++F   kG  i ws ++ +d++l+ vEf  LPSG+h ++ d+vyf+++++ g+++Fr+++  e+ +r+ ++ s+G+l+ + ++r  + w++++ Lk+
  CDO70165.1  12 FHASFHPTKGSIIDWSLKAsEDLDLSHVEFSCLPSGLHLIERDVVYFTKDDHQGVCVFRRRQTTEHGHRGFRLSSLGILLAK-SSRP-RPWKHVAALKS 108
                 7788999*********9998*************************************************************9.4444.89********* PP

     DUF2347 100 llkkl...lesedntsvLeeyfekeka.kkedeesssekksesrerslsdassleteeealssthllssLpelldklGplifpLykaaLlrkrILllss 194
                 l++++   le+++ +++L+e +e  +a  +e++ ++++          s    +++ e + s+ ++  +Lp+ll+ lGp+ ++Lyk +L r+r+L+++ 
  CDO70165.1 109 LVHTIysaLEDREALEPLDEDWEPARAfFEERKLRRPD-----LGGVGSWLGWNAELEGTHSDISPTVHLPHLLRILGPSSLTLYKHILGRRRVLIITL 202
                 997652226777***********999977777777776.....23333444444444555677888899****************************** PP

     DUF2347 195 apveelcsl.......vYl..ls.lLssipksleellkse......ssrlrplfnvgvaDipsLekekke.sgyiActtdeiLalkkeLyDvlvklppk 276
                 +pve +c l       +Y   +s l+s    +  ++  +       +  ++ l  v ++D+++Le e+k+  g+iActtd+i+  k+  yD+l++l+++
  CDO70165.1 203 PPVEAACILcqvaadtCYEeqVSeLISAADGQDDDTETPRrlkgrsNAGVKVLGMVTLSDLDKLEFESKSgRGWIACTTDSIFLDKPAHYDLLIDLRSA 301
                 *****99998889888664223326666665555555444677877888999************98887779************************976 PP

     DUF2347 277 s 277
                  
  CDO70165.1 302 T 302
                 5 PP

>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1   0.00016      0.94       7      60 ..      14      61 ..       9      87 .. 0.79
   2 !    6.2   0.0   0.00059       3.6     271     313 ..     258     301 ..      99     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00016
        Avl9  7 vgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfeedfvyFtle 60
                  Fh +kG  +++s         +++ + +   f  lp G H  e d vyFt  
  CDO70165.1 14 ASFHPTKGSIIDWSLK------ASEDLDLSHVEFSCLPSGLHLIERDVVYFTKD 61
                5799999999999998......33455678899******************976 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00059
        Avl9 271 lpLqqldlL..sdksvksflvGtsNsLllqqkelladvlvdvdea 313
                 ++L  ld+L  ++ks +++++ t+ s++l++  + +d+l+d+ +a
  CDO70165.1 258 VTLSDLDKLefESKSGRGWIACTTDSIFLDKPAH-YDLLIDLRSA 301
                 4566666665567778888888888888888877.8888887765 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.61   3.6e+03       6      33 ..     175     202 ..     172     218 .. 0.80
   2 ?   11.8   0.0   2.9e-05      0.17      68     108 ..     257     301 ..     237     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.61
         SPA   6 kllekftpeiillinalltskriivlst 33 
                 +ll+ ++p+  +l + +l + r+++++ 
  CDO70165.1 175 HLLRILGPSSLTLYKHILGRRRVLIITL 202
                 5677788999999999*******99875 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.9e-05
         SPA  68 yvdlseldalekvpg....yIvGvtNPiFeeqeqlWDvlydldsg 108
                 +v+ls+ld+le   +     I+ +t  iF ++  ++D+l+dl s 
  CDO70165.1 257 MVTLSDLDKLEFESKsgrgWIACTTDSIFLDKPAHYDLLIDLRSA 301
                 6889999998765556788**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4328.11
//
Query:       CDO70166.1  [L=147]
Description: hypothetical protein BN946_scf185009.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1114.29
//
Query:       CDO70167.1  [L=590]
Description: hypothetical protein BN946_scf185009.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.5    6.2   7.3         17    4.9   7.3    1.6  1  SMYLE_N   Short myomegalin-like EB1 binding proteins, N-termi


Domain annotation for each model (and alignments):
>> SMYLE_N  Short myomegalin-like EB1 binding proteins, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.3   0.00093        17     189     256 ..     345     417 ..     343     455 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.00093
     SMYLE_N 189 RkvaRsiscgpstrysasvgeeeeavselaaaelae.....aksssegesleeespassvesLdtavdvvkpa 256
                 R ++Rs+s + str s++ +++e+ v+++  + + +     a+s  ++ s +++ pa sv+s +t++  ++ +
  CDO70167.1 345 RPLSRSTSASFSTRLSSADMDRESLVNTEPLTRARTasnasASSIVSSGSRDSSGPAQSVASSQTSQGRSAVP 417
                 7799***********9999777755554444433330000033333444455788889999988887655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4091.56
//
Query:       CDO70168.1  [L=457]
Description: hypothetical protein BN946_scf185009.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-55  188.5   0.5    5.3e-55  186.3   0.0    2.2  2  Gti1_Pac2  Gti1/Pac2 family
  ------ inclusion threshold ------
      0.047   13.9   0.1      0.099   12.8   0.1    1.5  1  LAL_C2     L-amino acid ligase C-terminal domain 2


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   0.0   5.9e-59   5.3e-55       2     181 .]      17     178 ..      16     178 .. 0.85
   2 ?   -0.6   0.1      0.14   1.2e+03     101     115 ..     276     290 ..     250     323 .. 0.49

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 5.9e-59
                 EES---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH--SS---S--B---EEETTEEEEEB---------------------- CS
   Gti1_Pac2   2 fkgyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeeesgikRWTDGvsWSpSrilgnfLvYreldkkrakkkkkkkkkkskestk 100
                 ++g+iett dall++ea+++g+++rvtrRl ++Erk +i+sGsvFvf+e+esgikRWTDG+ WSpSrilgnfL+Yre++k+ a +++ + + + +e  +
  CDO70168.1  17 WSGWIETTGDALLILEAARRGLIPRVTRRLVDSERK-MITSGSVFVFDEDESGIKRWTDGFFWSPSRILGNFLLYRETEKRGAGHSRARAEPAVEEVDT 114
                 89**********************************.*******************************************9999888775544433322 PP

                 ---------.................----------------------------------EEEEEEEEEETTTEEEEEEE- CS
   Gti1_Pac2 101 keesksekasssssesseakessssseskasksskslekdserslvgsltdsykfkkdgLvKkTisvtlkgkelhlisYyk 181
                 ++++         ++    ++       k ++s+   ++++er lvgslt+sykfk +g++KkT+s+t+ g+++hlisYyk
  CDO70168.1 115 SKQD--------GQSL---SRP------KGESSRLGIDRQRERLLVGSLTNSYKFKPGGMMKKTFSLTIGGVAQHLISYYK 178
                 2211........1111...111......123345678999****************************************6 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.14
                 ---------...... CS
   Gti1_Pac2 101 keesksekassssse 115
                 k+++k++++ ss++e
  CDO70168.1 276 KRSRKKNNSASSQQE 290
                 111111111111111 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.1e-05     0.099      16      50 ..      99     133 ..      96     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
      LAL_C2  16 GleearalpgvveveltvkpGdevrpprssgdrlG 50 
                 G  +ara p v+ev+  ++ G+++ +p+   +rlG
  CDO70168.1  99 GHSRARAEPAVEEVDTSKQDGQSLSRPKGESSRLG 133
                 7789******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3106.56
//
Query:       CDO70169.1  [L=146]
Description: hypothetical protein BN946_scf185009.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1073.29
//
Query:       CDO70170.1  [L=1023]
Description: hypothetical protein BN946_scf185009.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-10   39.9   0.0    5.9e-10   38.8   0.0    1.5  1  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.3e-14   5.9e-10      29     148 ..     359     476 ..     346     485 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.3e-14
  Transposase_21  29 nvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlrav 123
                     ++ l ++ dG   + +   +  +W  + i + l P +  k+++++   +ipGp++P ++++ +l P +  +  l +eG++ +da +++ f+   v
      CDO70170.1 359 DFALMFSVDGAQLYEHK--ASDCWIYIWIIFELGPDKRYKKRYVFPGAIIPGPRKP-RNLESFLFPGLAHISALQKEGLKIWDAANKRLFTSFPV 450
                     56677777777777754..4468*********************************.69************************************ PP

  Transposase_21 124 llwtindfPalstlsGlst.kgklac 148
                     ++++  d Pa+++l Gl+  +g ++c
      CDO70170.1 451 IIFATADSPAMAYLNGLVGhHGAQGC 476
                     ****************9861466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 7157.81
//
Query:       CDO70171.1  [L=101]
Description: hypothetical protein BN946_scf185009.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 753.99
//
Query:       CDO70172.1  [L=95]
Description: hypothetical protein BN946_scf185009.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.7   0.0      0.093   13.1   0.0    1.7  2  TSC22     TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.18   3.2e+03      29      39 ..       3      13 ..       1      14 [. 0.78
   2 ?   13.1   0.0   5.2e-06     0.093      24      45 ..      71      92 ..      68      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.18
       TSC22 29 rnseleeENsl 39
                + ++ e+EN++
  CDO70172.1  3 HHHHFEKENNF 13
                5688999*985 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.2e-06
       TSC22 24 keLeernseleeENslLkalas 45
                ++L++r+ +le ENs+L+ +++
  CDO70172.1 71 ADLTYRIGRLELENSQLRYIIP 92
                89****************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 690.32
//
Query:       CDO70173.1  [L=339]
Description: hypothetical protein BN946_scf184774.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.9   0.6      0.088   13.2   0.3    2.1  1  HsbA      Hydrophobic surface binding protein A


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   4.9e-06     0.088      32      93 ..      90     161 ..      86     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.9e-06
                 HHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH.....CHHHHHHHHHHHHHTHHHHH.....H CS
        HsbA  32 lpilsasnalvsaikkattdaqasapltdeealalaqavqt.....LepdvkaaldaliaKkpafd.....k 93 
                 + il a++++++ ++k+ ++a++++ + ++ ++a+++ v++     L+ +++  +++l +K +++      +
  CDO70173.1  90 MLILLAFQQFQTMLDKSFDNASTASAFMQQYSEAIMTDVAQasyvsLRGEIQMFVKWLETKAEDVLrtkneS 161
                 66899********************************998558899***************99988444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2397.38
//
Query:       CDO70174.1  [L=1798]
Description: hypothetical protein BN946_scf184774.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-07   30.8   7.4    5.6e-07   29.8   7.4    1.6  1  zf-RING_2     Ring finger domain
    1.5e-05   25.1   4.3    3.4e-05   23.9   4.3    1.6  1  FANCL_C       FANCL C-terminal domain
    0.00044   20.2   1.9     0.0011   18.9   1.9    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0035   17.6   6.7     0.0035   17.6   6.7    2.0  2  zf-rbx1       RING-H2 zinc finger domain
  ------ inclusion threshold ------
      0.019   15.1   6.0      0.038   14.1   6.0    1.6  1  RINGv         RING-variant domain
      0.055   13.8   7.4       0.13   12.5   7.4    1.7  1  zf-RING-like  RING-like domain
       0.06   13.2   8.0       0.11   12.4   8.0    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
        0.1   12.4   7.2       0.25   11.2   7.2    1.7  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
       0.34   10.7   5.5       0.64    9.9   5.5    1.4  1  zf-RING_4     RING/Ubox like zinc-binding domain
       0.43   10.2   9.7      0.033   13.8   4.4    1.9  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
       0.79    9.7   4.7       0.36   10.8   1.9    1.8  2  C1_1          Phorbol esters/diacylglycerol binding domain (C
        1.7    8.4   3.8        6.4    6.6   1.0    2.5  2  zf-RING_11    RING-like zinc finger
        2.1    8.4   6.8        5.8    6.9   0.1    3.7  4  Cnd1          non-SMC mitotic condensation complex subunit 1
        2.4    8.1   4.9        5.4    6.9   4.9    1.6  1  Prok-RING_4   Prokaryotic RING finger family 4
        4.6    7.2   6.4        8.7    6.3   6.4    1.5  1  PHD           PHD-finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   7.4   4.7e-10   5.6e-07       2      44 .]    1743    1791 ..    1742    1791 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.7e-10
   zf-RING_2    2 eCpICleelssads.vlllp...CgHvfhreClerwlrssst..CPlCr 44  
                  eC+IC++ ++ +d  ++++p   C+  fh  Cl +w+++s++  CPlCr
  CDO70174.1 1743 ECAICYSVVNATDGsLPRKPcktCKNRFHAACLYKWFNTSHSssCPLCR 1791
                  8*****999666664444451126678*********77666668****9 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   4.3   2.9e-08   3.4e-05       4      47 ..    1743    1785 ..    1740    1796 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.9e-08
                  S-SSS--SS-.TT-----B--S-TT----B-SGGGHHHHHHHHSS CS
     FANCL_C    4 eCgiCyayrl.dsgevpdisCdnekCnkkfHsaCLkeWlrslkes 47  
                  eC iCy+     +g++p + C    C+++fH+aCL+ W+++ ++s
  CDO70174.1 1743 ECAICYSVVNaTDGSLPRKPCK--TCKNRFHAACLYKWFNTSHSS 1785
                  8*****97653799*******6..7***************98876 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.9   9.5e-07    0.0011      51      81 ..    1765    1794 ..    1734    1797 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.5e-07
                  TTS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11   51 kckhnfhlhcilkwletetskglcpmcrqtf 81  
                  +ck  fh+ c++kw++t++s   cp+cr ++
  CDO70174.1 1765 TCKNRFHAACLYKWFNTSHSS-SCPLCRSEI 1794
                  6***************99885.7*****876 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       6.4   7.6e+03      31      38 ..     787     794 ..     786     795 .. 0.87
   2 !   17.6   6.7   2.9e-06    0.0035      30      55 .]    1764    1791 ..    1742    1791 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.4
     zf-rbx1  31 eCgHaFHl 38 
                 +C H++Hl
  CDO70174.1 787 ACAHVWHL 794
                 6******7 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.9e-06
     zf-rbx1   30 GeCgHaFHlhCiskWlkt..rkvCPlcr 55  
                   +C+  FH  C+ kW++t  +++CPlcr
  CDO70174.1 1764 KTCKNRFHAACLYKWFNTshSSSCPLCR 1791
                  26****************88889****8 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   6.0   3.2e-05     0.038       1      48 []    1744    1790 ..    1744    1790 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-05
                  ETTTTEE-SSSS..--B-SS-.-STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv    1 CriCleeeeese..plispCk.CrGslklvHesClekWldekeantqCeiC 48  
                  C iC+   +  +     +pCk C+     +H +Cl kW+++ +++++C +C
  CDO70174.1 1744 CAICYSVVNATDgsLPRKPCKtCKN---RFHAACLYKWFNT-SHSSSCPLC 1790
                  9999987666655355788874665...89***********.********* PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.4   0.00011      0.13      14      43 .]    1763    1790 ..    1744    1790 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
  zf-RING-like   14 CsnesCnvrlHvdCfqhyirthsskkCpkC 43  
                    C+  +C+ r+H  C+ + ++t+ s +Cp C
    CDO70174.1 1763 CK--TCKNRFHAACLYKWFNTSHSSSCPLC 1790
                    77..*************************9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   8.0   9.2e-05      0.11       1      41 []    1744    1790 ..    1744    1790 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.2e-05
                  -TTT-S--SS-E.......E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4    1 CpiCleeakepn......elleCkHsfCskCirkilksrkkvkCPlC 41  
                  C+iC +++  ++         +Ck +f+ +C+ k+ +++ + +CPlC
  CDO70174.1 1744 CAICYSVVNATDgslprkPCKTCKNRFHAACLYKWFNTSHSSSCPLC 1790
                  9******99999999999999****************999999**** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.2   0.00021      0.25       1      40 []    1743    1790 ..    1743    1790 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
  zf-C3HC4_2    1 kCpiCldmlkdpsvvt......pCgHvfCqkCilrsLeekn..eCPlC 40  
                  +C+iC+ + + +  +        C+ +f++ C+ ++ + +   +CPlC
  CDO70174.1 1743 ECAICYSVVNATDGSLprkpckTCKNRFHAACLYKWFNTSHssSCPLC 1790
                  699999998754322233444489***********98765446***** PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.5   0.00054      0.64       1      46 [.    1744    1793 ..    1744    1794 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00054
   zf-RING_4    1 cplCdeeldetdkdl..kpC.eCgyqiClfCyhrile.eeegrCPaCree 46  
                  c +C + +++td +l  kpC +C+ ++   C+ +  + +++  CP Cr+e
  CDO70174.1 1744 CAICYSVVNATDGSLprKPCkTCKNRFHAACLYKWFNtSHSSSCPLCRSE 1793
                  999*********998779**88*********999888356899*****86 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       3.7   4.4e+03      23      30 ..     787     794 ..     786     796 .. 0.84
   2 ?   13.8   4.4   2.8e-05     0.033       6      46 ..    1743    1788 ..    1739    1795 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.7
  Zn_ribbon_17  23 vCeHvlHa 30 
                   +C Hv H 
    CDO70174.1 787 ACAHVWHL 794
                   6****995 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.8e-05
  Zn_ribbon_17    6 sCayCelavkgr...v..vlcgvCeHvlHasCarewfenddlaeCp 46  
                    +Ca+C   v+     +    c+ C+   Ha+C+ +wf++ ++++Cp
    CDO70174.1 1743 ECAICYSVVNATdgsLprKPCKTCKNRFHAACLYKWFNTSHSSSCP 1788
                    67777654443211122247*************************9 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.9    0.0003      0.36       7      44 ..    1737    1776 ..    1733    1785 .. 0.87
   2 ?   -1.6   0.1       2.1   2.5e+03       7      21 ..    1780    1794 ..    1775    1797 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
                  --SS--B-TTT-SB-.-S.SSS-EEEETTT--EE-CCCCT CS
        C1_1    7 nfkqptfCkhCgefl.wg.kekqglkCswCkllvHkkChe 44  
                  +f+  + C+ C + +  + ++++   C++Ck ++H  C+ 
  CDO70174.1 1737 HFEGIAECAICYSVVnATdGSLPRKPCKTCKNRFHAACLY 1776
                  5678899********85679******************85 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
                  --SS--B-TTT-SB- CS
        C1_1    7 nfkqptfCkhCgefl 21  
                  n+++++ C  C++ +
  CDO70174.1 1780 NTSHSSSCPLCRSEI 1794
                  667999*****9988 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.17     2e+02      20      26 ..     788     794 ..     785     795 .. 0.88
   2 ?    6.6   1.0    0.0054       6.4       1      29 []    1743    1775 ..    1743    1775 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.17
  zf-RING_11  20 CsHtFHf 26 
                 C H++H+
  CDO70174.1 788 CAHVWHL 794
                 ******6 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0054
  zf-RING_11    1 eCsICLeefkpgq.al.filp...CsHtFHfkCI 29  
                  eC+IC + +   + +l +  p   C+  FH  C+
  CDO70174.1 1743 ECAICYSVVNATDgSLpRK-PcktCKNRFHAACL 1775
                  9********9655466355.33569999**9995 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.12   1.5e+02      47     132 ..     647     751 ..     642     777 .. 0.64
   2 ?   -3.0   0.0       5.6   6.7e+03      18      76 ..     879     900 ..     876     908 .. 0.64
   3 ?   -0.6   0.0      0.98   1.2e+03      94     161 ..    1130    1196 ..    1118    1197 .. 0.72
   4 ?    6.9   0.1    0.0048       5.8      54     100 ..    1425    1472 ..    1408    1503 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.12
        Cnd1  47 kL..ilndmvkekg..flselaklleDenprVvanalaalteisek.se.....naiynllpdiisklsd......alne.....csewgqitilefLl 124
                  L  ++++++++    + + +++++ + ++ V+++   +l+++se+ ++     +a+ nl+++++ + +d      +  +      + +++i+il++  
  CDO70174.1 647 SLykLRPELFEVAWqiLADAVQRMVVNRDDAVSTLMPEVLKQLSEElDPatapgQAARNLVSQVMRNALDqcavllQ--TdeiinKHVESFIKILDTFG 743
                 5555566665544333789999**********************997556667755555555555555544444442..13343355677888888877 PP

        Cnd1 125 syipkdkq 132
                 +++  d++
  CDO70174.1 744 EHVFADAE 751
                 77766665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.6
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVva 76 
                 lve++  +L + L+De++ V+                                     a
  CDO70174.1 879 LVEAFDLHLDSVLHDEKASVQ-------------------------------------A 900
                 556666666666666666664.....................................3 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.98
        Cnd1   94 ynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviL 161 
                  +  +++i+ +l++  +  + w+ ++i ++L + ++++ + a +lv  +++r + + + +  + + +iL
  CDO70174.1 1130 VDKVQQIATYLLS-STAQEFWHTKVINTLLGQSTSSELEGAGQLVVEVVERAKRQDNVRSSRILHMIL 1196
                  5567788888884.3555557777777777777777777899******99999888877666666665 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0048
        Cnd1   54 vkekgflselaklleDenprVvanalaalteisek.senaiynllpdi 100 
                   + ++ ls++ +ll+D + +V+ +a  +l+e ++k +e+++++   d+
  CDO70174.1 1425 LITRDTLSKMCHLLTDGSINVQRMAYQLLQEAAKKyTEDLVIEAAVDV 1472
                  5678899****************************8778888877766 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.9    0.0046       5.4      24      40 ..    1778    1794 ..    1744    1797 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0046
  Prok-RING_4   24 CfdskdlssCPlCqrri 40  
                    f+ + +ssCPlC+++i
   CDO70174.1 1778 WFNTSHSSSCPLCRSEI 1794
                   24555677******998 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.4    0.0072       8.7       2      51 ..    1744    1792 ..    1743    1793 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0072
                  BTTTTS...TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD    2 CavCkk...ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51  
                  Ca+C +   ++d +     C++Ck+ fH +Cl    +++  ++    C+ C++
  CDO70174.1 1744 CAICYSvvnATDGSLPRKPCKTCKNRFHAACLYKWFNTSHSSS----CPLCRS 1792
                  8888887433333444457************988888655554....888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.51
# Mc/sec: 10549.05
//
Query:       CDO70175.1  [L=538]
Description: hypothetical protein BN946_scf184774.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-74  250.8   0.0    5.4e-74  249.6   0.0    1.5  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.0     3e-78   5.4e-74      16     459 ..      54     529 ..      41     533 .. 0.88

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 3e-78
                 HTT...TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSHS CS
        p450  16 lgr...keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsfg 110
                 lg+   ++++ e +++l++kyg ++r+ +++     + +p+a + v+++++   ++++++a++++      ++g++++++ +++ + R+++   + ++ 
  CDO70175.1  54 LGKvaaDGHRSERVHELHEKYGTFVRIAPNHL---SIADPDALQVVYGHGTGTLKSDFYDAFVSI------ERGLFNTRSrPEHARKRKIVSHIFSQKS 143
                 444444899999****************9875...6789************99999999999998......89999999999999***********995 PP

                 TTTHHHHHHHHHHHHHHHHHCCCCHCS...................EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH..................... CS
        p450 111 klsleelveeeaedlveklrkkagess...................elditellskaaldvigsilFgarfdlledek..................... 169
                  l++e+ v     +l +++++ ++  +                    ld  ++ ++ a+d+ig+++Fga+f++l   k                     
  CDO70175.1 144 VLEFEPHVRAHLIQLFKQWDRLCEGGQkglsgdegeggwrgrdgrvWLDCLPWYNYLAFDIIGDLAFGAPFGMLVACKdsapvaisaqdamakygkead 242
                 55*********************999999***************999**************************98888889***************998 PP

                 .HHHHHHHHHHHHH..HHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHH CS
        p450 170 .lselvkaveelss..llskssvqllllfp.llkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeela 264
                  + e   av+ l++  + s+s+  l  + + l+k    + + k ++av++l++++ + + +r ++  ++   rrd+l+ l + + + +g+  + ++el+
  CDO70175.1 243 yEVEHFPAVQVLNDrgEYSASMGVLPPHWRpLVK--RIPWYSKGNQAVQRLAGIAIAAVAKRLASGVTD---RRDLLAKLQEGR-DDNGN-PMGRAELT 334
                 8444445555555533333444444444443555..5558999999******************99999...9**********8.66666.8******* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTT.T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT CS
        p450 265 atvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkr.eptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkG 360
                 a++l+ l+aG+dTts+ ++ + y+Lakn+ vqekl++E+de+l g+++    ++++++lpyl+avi+E+LR+h+++ ++lpR+v+   +++ g+ +p+G
  CDO70175.1 335 AEALTQLIAGSDTTSNSSCAITYYLAKNQRVQEKLQKELDEALaGNDDpVAAFEEVKRLPYLEAVINEALRIHSTSGIGLPRVVPAgGLEVCGRWFPEG 433
                 *******************************************7776678899*********************************99*********** PP

                 -EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSS CS
        p450 361 tevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkp 458
                 t+ +v++y++hrd++v+ ++P+ F+peR+ ++++     +  f PF++GpR+C+G++lA +el +++a++++++ + l + ++p  + e  g+l++p +
  CDO70175.1 434 TVLSVPTYTIHRDKSVWgDDPDAFRPERWFEQDK-V-AIQKTFNPFSFGPRSCVGRNLANLELLVIVASIFRRYHFVLEKPDAPLETRE--GFLRKPVE 528
                 *****************************99998.3.67899***********************************844333333333..79999976 PP

                 S CS
        p450 459 i 459
                  
  CDO70175.1 529 C 529
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3524.31
//
Query:       CDO70176.1  [L=290]
Description: hypothetical protein BN946_scf184774.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-10   41.2   0.0    4.7e-10   39.5   0.0    1.8  1  HSP20          Hsp20/alpha crystallin family
  ------ inclusion threshold ------
        1.3    7.7   9.1        1.7    7.4   9.1    1.1  1  Presenilin     Presenilin
        1.8    7.8   4.8        2.6    7.2   4.8    1.3  1  SMN            Survival motor neuron protein (SMN)
          2    7.0   5.6        2.5    6.6   5.6    1.0  1  Peptidase_S46  Peptidase S46
        4.6    6.2   8.3        7.1    5.5   8.3    1.2  1  SLC12          Solute carrier family 12
        5.6    5.1  30.3        6.9    4.8  30.3    1.1  1  PAT1           Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.6e-13   4.7e-10       5      99 ..     186     286 ..     183     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.6e-13
                 SEEEEEEE.EE-TT--CCCEEEEEET......TEEEEEEE--...---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-- CS
       HSP20   5 eeeefevk.ldvpglkkeelkvkved......nrvlvkgehe.eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkk 95 
                 +ee+f ++ +++pg+k+++l++++        ++v + g  +      ++g+++ r++++F+r++ +P ++++++v+ sl+dGvLt+++p  +p+++ +
  CDO70176.1 186 TEENFIIAvFELPGVKRQDLRITMSMcpltrvRQVNIAGISRpAVPMHGHGVRE-RKYGQFMRTLPVPPETKPEDVQISLEDGVLTLKIPGGTPAQA-E 282
                 55666664279***********98652222225688899888666667777766.***********************************9999866.6 PP

                 ---- CS
       HSP20  96 erki 99 
                  r+i
  CDO70176.1 283 DRHI 286
                 6766 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.1   0.00056       1.7     225     293 ..      34     116 ..      14     168 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00056
  Presenilin 225 aeek..kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse.........................seeeseeesseaessaeesseek 293
                 ++ +  ++++ +++++ +++++++++++ +++++++e          +                         +  ++++++++++++++ + +++
  CDO70176.1  34 QQ-EqhDQAALQQQQHLQQQHQQQQIEQPQQQQQQQE----------RvspsqlqlqqlppppppplltpqdvQ--HHHQQQHPQQQRTQYTPHPQ 116
                 11.1112222222222222223333333333333333..........133444555558888888888776431..22233333333333222222 PP

>> SMN  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.8   0.00088       2.6     126     204 ..      35     118 ..       6     149 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00088
         SMN 126 dedalkeanvnetesstdesdrssrsakakdksnleiakssqknlrfppvppptppgl.......grrgekldtlgpflsgwpppl 204
                 +e++ + a +++++   +  ++  + ++ +++++  +++s  + +++pp+ppp+   l         + +++++    ++  p ++
  CDO70176.1  35 QEQHDQAALQQQQHLQQQHQQQQIEQPQQQQQQQERVSPSQLQLQQLPPPPPPPL--LtpqdvqhHHQQQHPQQQRTQYTPHPQTI 118
                 1112222222222222222233333344444344444444445556666655542..22222221122223334444444455555 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.6   0.00085       2.5     322     457 ..      27     161 ..      20     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00085
                    TTHHHHHHHHHHHHHHHHHHCT-H.HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH....HH-HHHHHHHHHHHH CS
  Peptidase_S46 322 kkvlekkqaeeaalrawlkkdpekkekygkalselealvkekrklaersalleeaessgsellslarklvrlaeerekpdaereeeyqeraleale 417
                    ++ l+++q+e+++ +a  +++  ++++ ++ +++ ++ +++++++  ++  l+++       l +++++++  ++++ p+++r++ + + ++ +l+
     CDO70176.1  27 QDALQMQQQEQHDQAALQQQQHLQQQHQQQQIEQPQQQQQQQERVSPSQLQLQQLPPPPPPPLLTPQDVQHHHQQQH-PQQQRTQYTPHPQTISLQ 121
                    6778888888888888888888888999999***************************9999999999999766666.********9999****** PP

                    HHCHHHHCS--HHHHHHHHHHHHHHHHHHS-GGG--S--- CS
  Peptidase_S46 418 keleridkdldaevdkavlaallkeyreklkaerlpavdk 457
                     + ++ + ++d+  + +v+  l+  y+++ + e++p+  +
     CDO70176.1 122 PAKSQPQYRFDNITEDHVAPSLFLIYAASHDPETTPTATT 161
                    9999999***********9999999999999988887665 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.3    0.0024       7.1     137     220 ..      31     120 ..      18     144 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0024
       SLC12 137 eeekekkeaeesekeeeekkkakkkklleekskekeekekleekdsnlslseekk...............eeekekkkekkkkkekkeklkkkekslll 220
                 ++++++++ +++ +++++ +++++++++e+ +++++++e+++ ++         +               + + ++++++++ ++++++ + + ++++l
  CDO70176.1  31 QMQQQEQHDQAALQQQQHLQQQHQQQQIEQPQQQQQQQERVSPSQL--------QlqqlppppppplltpQ-DVQHHHQQQHPQQQRTQYTPHPQTISL 120
                 2211111111111222222222223333333333333322222222........02223345677776531.222222222222222222223333333 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  30.3    0.0023       6.9     222     337 ..      21     133 ..       6     176 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0023
        PAT1 222 sqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappakvqptqilqnpnr 320
                  ++P++++a q ++++q+ +a+ +qq++ ++++qqq+ eq++q+qq ++++ ++++lq +q  ++ p+ p  ++++ ++++q++  ++q tq    p+ 
  CDO70176.1  21 WDVPSEQDALQMQQQEQHDQAALQQQQHLQQQHQQQQIEQPQQQQQ-QQERVSPSQLQLQQLPPPPPP-PLLTPQDVQHHHQQQHPQQQRTQYTPHPQT 117
                 3788888887777666666555555555555555555555544444.555667888888887755544.455555555555555556788998888887 PP

        PAT1 321 laarlelsqkeqaaaqa 337
                  + +  +++++q++ ++
  CDO70176.1 118 ISLQP-AKSQPQYRFDN 133
                 74443.44444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3246  (0.181047); expected 358.6 (0.02)
Passed bias filter:                     1013  (0.0565006); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.33s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 1754.09
//
Query:       CDO70177.1  [L=429]
Description: hypothetical protein BN946_scf184774.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-13   48.0  10.4    1.8e-12   47.1   8.3    2.0  2  DUF2046   Uncharacterized conserved protein H4 (DUF2046)


Domain annotation for each model (and alignments):
>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   8.3     1e-16   1.8e-12      94     158 ..      18      82 ..      13      85 .. 0.92
   2 ?    0.2   0.0     0.019   3.5e+02     230     251 ..     126     147 ..     112     178 .. 0.67

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 1e-16
     DUF2046  94 ketlalnyeqeeefltndlsrklsqlrqekveleqtlekeqevqvnklmrkiekleaevlakqtk 158
                 +e l  +ye eee + n lsrkl+qlr+ek+ele+ le+e e++vn+l r i  l+   +++q++
  CDO70177.1  18 REDLIYQYEAEEERIINILSRKLEQLREEKIELENVLEQESESHVNRLSREISALRLAQQQQQQQ 82 
                 799**************************************************999888777654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.019
     DUF2046 230 kalrkeverlrkqlkksqkehe 251
                  alr+e e lr++l +++++  
  CDO70177.1 126 DALRRENEALRSRLVETEQDFI 147
                 5677777777777777776642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2826.49
//
Query:       CDO70178.1  [L=95]
Description: hypothetical protein BN946_scf184774.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 717.07
//
Query:       CDO70179.1  [L=749]
Description: hypothetical protein BN946_scf184774.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-149  498.8   0.0   1.3e-148  495.3   0.0    2.0  2  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
    1.9e-08   34.7   2.3    5.6e-05   23.6   0.2    4.2  4  TPR_19    Tetratricopeptide repeat
    5.8e-06   26.0   7.8        2.4    8.5   0.1    6.0  6  TPR_2     Tetratricopeptide repeat
     0.0001   22.3   1.1       0.95    9.8   0.0    5.5  5  TPR_8     Tetratricopeptide repeat
     0.0012   19.3   1.1         18    6.2   0.0    5.4  6  TPR_6     Tetratricopeptide repeat
     0.0046   16.2   3.4       0.73    9.0   0.2    2.8  2  TPR_15    Tetratricopeptide repeat
     0.0069   16.6   8.3       0.19   12.0   2.0    4.2  4  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.046   14.4   0.6       0.79   10.4   0.1    3.3  3  TPR_16    Tetratricopeptide repeat
      0.057   13.3   4.3         29    4.7   0.1    4.9  5  TPR_1     Tetratricopeptide repeat
        2.1    7.2  11.8       0.19   10.6   0.1    2.9  3  NARP1     NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.3   0.0    7e-152  1.3e-148       2     395 .]      52     427 ..      51     427 .. 0.97
   2 ?    1.3   0.0     0.078   1.4e+02     250     289 ..     638     677 ..     626     698 .. 0.85

  Alignments for each domain:
  == domain 1  score: 495.3 bits;  conditional E-value: 7e-152
                 XXXEEEEEEEXXXXSXHHHHHHHHHHHHCCSSSSXXXTTSXXXXXECCEEEEEEEETTTTEEEEEEEESSXXEEEEEEETTSXBEEXHHHHHHHHHHHH CS
       ChAPs   2 keiGtyfyvtGvdtSssasiavylkqlteslseksqlwFgkkktfkvskisyctyNaFskvDvrvevkiPGsvesyvvdergekeeatdelWaEtflsg 100
                 +++G+y+yv+Gvd+Sssas+a+y+++lt+ + e+++ wF+k +++kv+++ yc++NaFs+vDvrv vkiPG+v++yvvd rge++eat+e+W+Etfls+
  CDO70179.1  52 RDLGSYHYVSGVDASSSASLAAYINSLTYNI-EDDSGWFSKGTSWKVKSGCYCCFNAFSRVDVRVDVKIPGGVQAYVVDLRGERHEATPEIWQETFLSA 149
                 689****************************.999**************************************************************** PP

                 HHHHHHHHHTTTTTTS----TTEEE--GGG--SSS-HHHHHHHTHHHHTTCGGGG---TT-SS--SSSSHHHHHHHHHHHHHT-HHHHHHHHHHHHTT- CS
       ChAPs 101 vlRsllladdnadddevqklvetrklnPltsgelekkaelFlkafeklfekgvklgadsevqvptlvnNyLvetllklvrltkrydralellekLkeee 199
                 +lR++l++dd     +++ l  +rkl+P+t++e e +   Fl+a+e+lf+kg+++g+d+e+qv+t+v+N+L+++++k++  + ry+ a++l+ek+ ++e
  CDO70179.1 150 LLRAILYSDD-----SSYWLEAYRKLDPITTPEGELR---FLQAAEALFMKGWQVGSDPEIQVATVVSNHLTAAIMKYFGDSGRYQYAANLFEKILAKE 240
                 **********.....458999****************...*********************************************************** PP

                 GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----S CS
       ChAPs 200 pevvillarvllladeEvdavkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLNscPmft 298
                 pev++llar ++ ++eEv+av+++ ++++++++++ lL++q +fl  k k+e+Al++a++av++aPsef tW +L+++Yi+l ++enALltLNscPmft
  CDO70179.1 241 PEVASLLARSYIGMNEEVKAVQIMAAAIKQTPQSYTLLHVQCDFLRGKGKYEWALKLARQAVNCAPSEFVTWEKLTEIYIDLRQYENALLTLNSCPMFT 339
                 *************************************************************************************************** PP

                 S--------SS-------EB---TTSS--TT--------SS---S---HHHHT-TTTT--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHB-XXXXXX CS
       ChAPs 299 ykekdvlrriapakseddlhlPlpldvvldevselnssevteeqkevdpsLlrlkaanlkstfakaYelLteivkkiGWeeLLkvRskvFvmeeEYr 395
                 y+ +d++r  a+a+    +hlP +       +++  +++v+++++e+dp+Llrl+a+ l++t+a+aY+lLt++v++iGW+eLLk Rs+vFvmeeEYr
  CDO70179.1 340 YNGRDAHRNLASAR----VHLPPKG-----AITDILPERVKTDDDEADPALLRLPAPGLRGTWARAYSLLTRLVSQIGWDELLKTRSSVFVMEEEYR 427
                 **************....***9654.....4556667788889*****************************************************8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.078
                 -HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHH CS
       ChAPs 250 eelAlevakravksaPsefktWalLvkvYikledienALl 289
                 +e A+e+ +r  ++     k+W +L ++Y + +di+  L 
  CDO70179.1 638 KEEAKEAYQRCLDTHRYSHKPWSKLLDMYAEEGDIQRTLQ 677
                 5668888888888888899****************99885 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   3.1e-08   5.6e-05       4      59 ..     223     274 ..     222     281 .. 0.90
   2 ?    4.0   0.0     0.039        70       4      53 ..     288     337 ..     285     351 .. 0.80
   3 ?   -4.2   0.0        10   1.8e+04      40      50 ..     637     647 ..     633     653 .. 0.64
   4 ?    3.8   0.0     0.047        85       3      41 ..     668     709 ..     666     710 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.1e-08
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 +g+y+ A++l+e++    +k +e++ lLA+ ++ +++  +A ++++a+ +++p+ +
  CDO70179.1 223 SGRYQYAANLFEKI---LAKEPEVASLLARSYIGMNEEVKAVQIMAAAIKQTPQ-S 274
                 79************...55577*******************************9.3 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.039
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                  g+y+ Al+l +qa   +p     +  L e+++ l q++ A  +L+  p 
  CDO70179.1 288 KGKYEWALKLARQAVNCAPSEFVTWEKLTEIYIDLRQYENALLTLNSCPM 337
                 67888888888888888888777777899***************998665 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 10
      TPR_19  40 qldeAealLda 50 
                 + +eA+++ ++
  CDO70179.1 637 HKEEAKEAYQR 647
                 56777777665 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.047
      TPR_19   3 aegdyaeAlalleqalqe.dpknaearl..lLAeallalgql 41 
                 +egd ++ l+   ++ ++   ++ae  +  + A++l++lgq+
  CDO70179.1 668 EEGDIQRTLQVAVRVAAYqWGDYAEMTYptQIARCLFKLGQI 709
                 67888888888888644446778888888889********96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.3     0.007        13      14      33 ..     223     242 ..     221     243 .. 0.93
   2 ?    3.2   0.0     0.065   1.2e+02       2      33 ..     242     273 ..     241     274 .. 0.91
   3 !    7.5   0.0    0.0028       5.1      11      32 ..     285     306 ..     276     308 .. 0.85
   4 ?   -0.8   0.0       1.3   2.3e+03      10      21 ..     318     329 ..     317     333 .. 0.87
   5 !    8.5   0.1    0.0014       2.4       7      28 ..     628     649 ..     623     652 .. 0.83
   6 ?   -1.6   0.0       2.2   3.9e+03       8      16 ..     700     708 ..     698     710 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.007
       TPR_2  14 lgdyeeAleafekAleldPn 33 
                 +g+y+ A+++fek l+ +P+
  CDO70179.1 223 SGRYQYAANLFEKILAKEPE 242
                 69**************9996 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.065
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e+   l+++y+ +++  +A++ + +A++  P+
  CDO70179.1 242 EVASLLARSYIGMNEEVKAVQIMAAAIKQTPQ 273
                 66789***********************9997 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0028
       TPR_2  11 yyklgdyeeAleafekAleldP 32 
                 ++ +g+ye Al++ ++A+  +P
  CDO70179.1 285 LRGKGKYEWALKLARQAVNCAP 306
                 6789**************9988 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.3
       TPR_2  10 ayyklgdyeeAl 21 
                 +y+ l +ye Al
  CDO70179.1 318 IYIDLRQYENAL 329
                 7999*****997 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0014
       TPR_2   7 lGlayyklgdyeeAleafekAl 28 
                 lG++ ++l + eeA+ea++++l
  CDO70179.1 628 LGDLGMRLHHKEEAKEAYQRCL 649
                 56666899************99 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 2.2
       TPR_2   8 Glayyklgd 16 
                 +++++klg+
  CDO70179.1 700 ARCLFKLGQ 708
                 666777665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.22   3.9e+02       6      33 ..     246     273 ..     241     274 .. 0.89
   2 ?   -1.9   0.0       3.1   5.5e+03      11      29 ..     285     303 ..     283     307 .. 0.79
   3 ?    3.6   0.0     0.051        92       9      25 ..     317     333 ..     311     335 .. 0.80
   4 !    9.8   0.0   0.00053      0.95       6      29 ..     627     650 ..     625     651 .. 0.90
   5 ?   -0.6   0.0       1.1   2.1e+03       8      17 ..     700     709 ..     697     722 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.22
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 +l++ y+ +++  +A++ +  a++  p+
  CDO70179.1 246 LLARSYIGMNEEVKAVQIMAAAIKQTPQ 273
                 799********************98775 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
                 HHHTT-HHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekale 29 
                 ++ +g+ye A +  ++a+ 
  CDO70179.1 285 LRGKGKYEWALKLARQAVN 303
                 5678999999999999986 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.051
                 HHHHHTT-HHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyye 25 
                  iy++l +ye+A  +++
  CDO70179.1 317 EIYIDLRQYENALLTLN 333
                 69**********76665 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00053
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                  lg++ + l  +eeAke+y+++l+
  CDO70179.1 627 ILGDLGMRLHHKEEAKEAYQRCLD 650
                 68999999**************95 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.1
                 HHHHHHTT-H CS
       TPR_8   8 gsiylklgdy 17 
                 +++++klg++
  CDO70179.1 700 ARCLFKLGQI 709
                 5555555554 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.53   9.5e+02      14      31 ..     224     241 ..     182     242 .. 0.75
   2 !    6.2   0.0    0.0099        18       6      33 .]     247     274 ..     246     274 .. 0.91
   3 ?   -2.5   0.0       6.3   1.1e+04       8      24 ..     317     333 ..     314     335 .. 0.78
   4 ?   -2.8   0.0       7.7   1.4e+04      16      28 ..     393     405 ..     390     406 .. 0.82
   5 ?    4.9   0.0     0.027        48      16      29 ..     638     651 ..     632     652 .. 0.86
   6 ?   -0.8   0.0       1.7   3.1e+03       5      15 ..     698     708 ..     698     710 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHH-T CS
       TPR_6  14 gdtdkAlealerlikeYP 31 
                 g+++ A  ++e+++ + P
  CDO70179.1 224 GRYQYAANLFEKILAKEP 241
                 799999999***999988 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0099
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPdS 33 
                 la+sy+ +++  kA++++   ik+ P+S
  CDO70179.1 247 LARSYIGMNEEVKAVQIMAAAIKQTPQS 274
                 8******98999**********998876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.3
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   8 lsyrklgdtdkAleale 24 
                 + y+ l ++++Al +l+
  CDO70179.1 317 EIYIDLRQYENALLTLN 333
                 57888889**9998886 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 7.7
                 HHHHHHHHHHHHH CS
       TPR_6  16 tdkAlealerlik 28 
                 +++A  +l rl++
  CDO70179.1 393 WARAYSLLTRLVS 405
                 7899999999986 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHH CS
       TPR_6  16 tdkAlealerlike 29 
                 +++A+ea++r+++ 
  CDO70179.1 638 KEEAKEAYQRCLDT 651
                 79*********986 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 1.7
                 HHHHHHHHHHH CS
       TPR_6   5 klalsyrklgd 15 
                 ++a++++klg+
  CDO70179.1 698 QIARCLFKLGQ 708
                 58999999887 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.3    0.0028         5     140     198 ..     269     327 ..     217     352 .. 0.70
   2 !    9.0   0.2    0.0004      0.73      47     104 ..     625     687 ..     608     711 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0028
      TPR_15 140 eaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrrae 198
                 ++  qs + l +   + r +g+ + Al+++r+A++ ap +    ++l  ++iDl ++++
  CDO70179.1 269 KQTPQSYTLLHVQCDFLRGKGKYEWALKLARQAVNCAPSEFVTWEKLTEIYIDLRQYEN 327
                 23346777777888888888888888888888888888877777777777777777664 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0004
      TPR_15  47 WrtladLAwalqqedearkAyrqLlasgkaraedyerliell.ydaepke....aarlaekgw 104
                 W++l+dL+  l  ++ea++Ay++ l +   + +  ++l+ ++ ++ + ++    a+r+a ++w
  CDO70179.1 625 WEILGDLGMRLHHKEEAKEAYQRCLDTHRYSHKPWSKLLDMYaEEGDIQRtlqvAVRVAAYQW 687
                 ******************************999999999995366565551111445555555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1        10   1.8e+04      16      29 ..     152     164 ..     146     167 .. 0.67
   2 !   12.0   2.0   0.00011      0.19       3      80 ..     224     333 ..     222     335 .. 0.73
   3 ?   -1.9   0.0       2.3   4.2e+03      36      49 ..     390     403 ..     389     408 .. 0.84
   4 ?    2.0   0.0      0.13   2.4e+02      57      72 ..     694     709 ..     673     711 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 10
                 H.HHH--HHHHHHH CS
      ANAPC3  16 laaetespedayll 29 
                   a  +s++++y+l
  CDO70179.1 152 R-AILYSDDSSYWL 164
                 3.667899999998 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
                 T-HHHHHHHHHHHH.............................HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT CS
      ANAPC3   3 nnyknAiflaerll............................aaetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkL 69 
                 ++y+ A  l+e++l                            aa ++ p++  ll   +  l   g+y+ A++l+r+a + +++    +  + + +++L
  CDO70179.1 224 GRYQYAANLFEKILakepevasllarsyigmneevkavqimaAAIKQTPQSYTLLhvqCDFLRGKGKYEWALKLARQAvNCAPSEFVTWEKLTEIYIDL 322
                 678888888888887777777777777777777777777776566666666444332255555555599999999999999999999999999999999 PP

                 T-HHHHHHHH- CS
      ANAPC3  70 kkyeeAiaaLe 80 
                  +ye A+ +L 
  CDO70179.1 323 RQYENALLTLN 333
                 99999998876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.3
                 TT-HHHHHHHHHCT CS
      ANAPC3  36 ngqykrAyellrka 49 
                 +g + rAy ll ++
  CDO70179.1 390 RGTWARAYSLLTRL 403
                 799******99886 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHTT-H CS
      ANAPC3  57 gcrylfAqcllkLkky 72 
                  +   +A+cl+kL+++
  CDO70179.1 694 TYPTQIARCLFKLGQI 709
                 4556678888888775 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00044      0.79       5      65 ..     218     272 ..     214     275 .. 0.72
   2 ?   -1.7   0.0       2.8     5e+03      10      24 ..     288     302 ..     281     303 .. 0.81
   3 ?   -1.2   0.0       1.9   3.3e+03       9      27 ..     634     652 ..     628     673 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00044
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 +++ ++g+y+ Aa+++e  l++    P+    + ll++++   ++  +A++  +aa+++ p
  CDO70179.1 218 KYFGDSGRYQYAANLFEKILAKE---PE---VASLLARSYIGMNEEVKAVQIMAAAIKQTP 272
                 67889******************...98...555555555555555556665666655555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
      TPR_16  10 agdyddAaaaleaal 24 
                  g+y+ A++++++a+
  CDO70179.1 288 KGKYEWALKLARQAV 302
                 688999999998886 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.9
      TPR_16   9 ragdyddAaaaleaalkrd 27 
                 r+ + ++A +a+++ l+ +
  CDO70179.1 634 RLHHKEEAKEAYQRCLDTH 652
                 6677789999999987766 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.16   2.9e+02      14      33 ..     223     242 ..     220     243 .. 0.88
   2 ?    3.2   0.0     0.048        87      14      32 ..     288     306 ..     285     308 .. 0.82
   3 ?   -0.1   0.0      0.52   9.2e+02      10      21 ..     318     329 ..     317     333 .. 0.89
   4 ?    4.7   0.1     0.016        29      17      29 ..     638     650 ..     633     653 .. 0.84
   5 ?   -1.3   0.0       1.2   2.2e+03       7      16 ..     699     708 ..     697     710 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
                 TT-HHHHHHHHHHHHHHSTT CS
       TPR_1  14 lgkydeAleyyekALelnPn 33 
                  g+y+ A   +ek L  +P+
  CDO70179.1 223 SGRYQYAANLFEKILAKEPE 242
                 59*************98885 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.048
                 TT-HHHHHHHHHHHHHHST CS
       TPR_1  14 lgkydeAleyyekALelnP 32 
                 +gky+ Al+  ++A+   P
  CDO70179.1 288 KGKYEWALKLARQAVNCAP 306
                 79*******9999986665 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.52
                 HHHHTT-HHHHH CS
       TPR_1  10 ayfklgkydeAl 21 
                 +y  l +y+ Al
  CDO70179.1 318 IYIDLRQYENAL 329
                 7999*******8 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHH CS
       TPR_1  17 ydeAleyyekALe 29 
                  +eA e+y+++L 
  CDO70179.1 638 KEEAKEAYQRCLD 650
                 69*********96 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHHHHTT- CS
       TPR_1   7 lGnayfklgk 16 
                 ++ ++fklg+
  CDO70179.1 699 IARCLFKLGQ 708
                 7889999998 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0001      0.19     195     298 ..     244     350 ..     210     353 .. 0.86
   2 ?   -3.1   3.6       1.5   2.6e+03     410     467 ..     517     551 ..     492     580 .. 0.42
   3 ?    3.3   0.1     0.017        30      42      91 ..     626     674 ..     606     699 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHTT-HHHHH...HHHTTTS-TT CS
       NARP1 195 lyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaDRyiNskcakymLradeveeAe...etvslFtree 290
                   +lA  y  +++  kA++++ +ai++tp++  l  +   +l+ +G  + A +++ +a +          k ++  +   ++e+A    + + +Ft ++
  CDO70179.1 244 ASLLARSYIGMNEEVKAVQIMAAAIKQTPQSYTLLHVQCDFLRGKGKYEWALKLARQAVNCAPSEFVTWEKLTEIYIDLRQYENALltlNSCPMFTYNG 342
                 568999999999999******************************************999888877777888888877777777742226688899988 PP

                 SHHHHHHH CS
       NARP1 291 vdaledln 298
                  da+ +l+
  CDO70179.1 343 RDAHRNLA 350
                 88888885 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT- CS
       NARP1 410 rkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkt 467
                 ++ +++k k                         k+k+++++ +++++   +++ ++ 
  CDO70179.1 517 EQAAAEKVKEM-----------------------KEKEANGHDEAKENGISANASAAL 551
                 11111222211.......................111111111111122222222222 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.017
                 HHHHHHHHHTT-HHHHHHHHHHHHHH-TT-CHHHHHHHHHT..SSS-HHH CS
       NARP1  42 etkaelllkLgrkeeAeatyeaLlernpenskYyeglekakklskedeea 91 
                 e+ ++l ++L +keeA+++y++ l+    ++k +++l      +++d+++
  CDO70179.1 626 EILGDLGMRLHHKEEAKEAYQRCLDTHRYSHKPWSKLLDMYA-EEGDIQR 674
                 778999***************999998888888888877764.3444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4793.47
//
Query:       CDO70180.1  [L=571]
Description: hypothetical protein BN946_scf184774.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  113.5   0.0      5e-32  111.4   0.0    2.1  2  AA_kinase  Amino acid kinase family
      7e-11   41.7   0.3    0.00015   21.5   0.1    2.8  2  ACT        ACT domain
    1.8e-07   30.9   0.8    0.00016   21.4   0.1    2.6  2  ACT_7      ACT domain
  ------ inclusion threshold ------
       0.15   12.4   0.1        2.8    8.4   0.1    2.3  2  Rrf2       Transcriptional regulator


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   1.1e-35     5e-32       2     241 .]      43     349 ..      42     349 .. 0.76
   2 ?   -2.9   0.0      0.92   4.1e+03     125     154 ..     470     499 ..     453     518 .. 0.72

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 1.1e-35
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHT.......................................TEEEEEE--.HHHHHHHHHHTCCCCCH CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesg.......................................nklvvVhGg.gsftdgllalksglssg 60 
                 ++V K GG+s++    ++  ++ae+i  +++s                                        + ++  + + ++++d + ++  ++++ 
  CDO70180.1  43 WLVQKYGGTSVG----KFAAKIAEDIIPFVQSAyccalfqvltfsrvepykspfaspgksspnsdtlgsslsMAPINSVPAfSNTVDLIRSE--HVNAA 135
                 677888888888....5666777777777666677777777777777777777777777777777777777755555555556666666666..33333 PP

                 HHC.........E..HHHHHHHHH........................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE...........HHHT CS
   AA_kinase  61 elaa.....glrstleeagevatr........................dalaslgerlvaallaaglpavglsaaaldateagr.........degsdg 121
                 +++            + ++e+  +                        d++  +gerl  +l++a l++++++a+ + +++            ++   +
  CDO70180.1 136 RSTVrnpeiL----KDLEAEI--ErdceslrsflfatqvideisprsrDSIIGFGERLGCKLVTAVLRDRNIDAEFVSLENIVPpsesenfseSDTLGQ 228
                 3332222221....1111122..0224455666667777888888889******************************998888888875555444444 PP

                 TTCEEECCHHHHHHHT.T.-EEEEESEEEEETTTE....EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS. CS
   AA_kinase 122 nvesvdaeaieellea.g.vvpvltgfigldeege....lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesasel 214
                 + + + a+ ++e +++ g  vpv+tgf+  +++g     +grg +D +aallA+ lgA +l i+++VdG+++adp+kvp+arl+p is +ea+e    l
  CDO70180.1 229 DFYDRLADVVAERIKQcGnRVPVVTGFF-GPVPGSllrqVGRGYTDLLAALLAAGLGASELQIWKEVDGIFTADPRKVPTARLIPIISPEEAAE----L 322
                 44444488888888888669******99.8888888999*******************************************************....* PP

                 TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 215 atgGmkvkhpaalaaarrggipvvItn 241
                 +++G +v+hp +++ + r +ip++I+n
  CDO70180.1 323 TYYGSEVVHPFTMDQVIRRKIPIRIKN 349
                 *************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.92
                 EEECCHHHHHHHTT-EEEEESEEEEETTTE CS
   AA_kinase 125 svdaeaieelleagvvpvltgfigldeege 154
                 +v  + ++el ++g v v+  ++ l+  g+
  CDO70180.1 470 KVLDRVVRELRKSGTVTVIRDMAILSLVGK 499
                 445566777777777777776666666555 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.3e-08   0.00015      11      64 ..     432     481 ..     420     483 .. 0.93
   2 !   17.3   0.0   6.8e-07    0.0031       6      64 ..     500     552 ..     495     554 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.3e-08
                 TTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT  11 PGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64 
                 +G La +fg+l ++g+ +d i+++++       + + +  d ++l+ v+++l+k
  CDO70180.1 432 HGFLATIFGTLDRYGVVVDLISTSEVYV----SMAIEENLDKKVLDRVVRELRK 481
                 7*************************76....9*******************98 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 6.8e-07
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64 
                 +++++ G+ +r f++l++ ++Ni++i+q+        ++++ +v+d +d+ ++l+ +++
  CDO70180.1 500 SMRNMIGISGRMFTTLGQGNVNIEMISQGAN------EINISCVIDGRDAVKALNLIHQ 552
                 799***************************9......8999999999999999988876 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00071       3.2       2      43 ..     414     454 ..     413     469 .. 0.88
   2 !   21.4   0.1   3.7e-08   0.00016       4      64 ..     489     551 ..     486     552 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00071
                 EEEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE- CS
       ACT_7   2 sedgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiSt 43 
                 +++++i+l+v +++ ++ + G++a++++ L + g+ +  iSt
  CDO70180.1 414 IKEHIIVLNVNSNRKNV-SHGFLATIFGTLDRYGVVVDLIST 454
                 6789*********9999.**************9999988884 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3.7e-08
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAveaLh 64 
                 ++++ ls+vg +++  ++Gi  ++++ L + +++i +iS    ++ ++++++ +d+ kA++  h
  CDO70180.1 489 RDMAILSLVGKSMRN-MIGISGRMFTTLGQGNVNIEMISqgaNEINISCVIDGRDAVKALNLIH 551
                 68899********99.************************9999*****************998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12   5.2e+02      33      55 ..     426     448 ..     419     450 .. 0.91
   2 ?    8.4   0.1   0.00062       2.8      32      59 ..     462     489 ..     455     489 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.12
                 HHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2  33 erqnispsylekilakLrkaglv 55 
                 +r n+s+ +l+ i+ +L + g+v
  CDO70180.1 426 NRKNVSHGFLATIFGTLDRYGVV 448
                 6889***************9998 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00062
                 HHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        Rrf2  32 aerqnispsylekilakLrkaglvksvr 59 
                 a + n+ +++l +++++Lrk+g v+++r
  CDO70180.1 462 AIEENLDKKVLDRVVRELRKSGTVTVIR 489
                 668899******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3815.02
//
Query:       CDO70181.1  [L=471]
Description: hypothetical protein BN946_scf184774.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.4e-105  351.7   0.0    9.5e-69  232.2   0.0    2.0  2  G-alpha     G-protein alpha subunit
     0.0016   17.9   0.0     0.0025   17.3   0.0    1.2  1  TniB        Bacterial TniB protein
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.032   14.0   0.0    1.7  2  AAA_29      P-loop containing region of AAA domain
      0.016   14.7   0.1       0.55    9.7   0.0    2.4  2  Arf         ADP-ribosylation factor family
      0.016   14.4   0.0      0.031   13.5   0.0    1.4  1  DAP3        Mitochondrial ribosomal death-associated protein 
      0.022   15.2   0.1      0.049   14.0   0.0    1.6  1  AAA_16      AAA ATPase domain
      0.046   13.0   0.0       0.08   12.2   0.0    1.3  1  Zeta_toxin  Zeta toxin
       0.13   12.0   0.0       0.41   10.3   0.0    1.8  2  AAA_24      AAA domain
       0.17   12.4   0.0       0.33   11.4   0.0    1.5  1  ABC_tran    ABC transporter


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.2   0.0   4.8e-72   9.5e-69       1     226 [.      39     354 ..      39     356 .. 0.88
   2 !  117.9   0.0   2.8e-37   5.6e-34     252     354 .]     357     460 ..     355     460 .. 0.99

  Alignments for each domain:
  == domain 1  score: 232.2 bits;  conditional E-value: 4.8e-72
                 XXXXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS--.--HHHHHC.CHHHHHHHHHHHHHHHHHHHHH..............TT. CS
     G-alpha   1 krtssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkg.fseeelat.wraviqlnivrsiktileales..............les 83 
                 kr+s aid+ ++ e k+rkk+++v+llllGqseSGKsT+l+q+++ly+++ f+ee  ++ wraviqlnivrsi+til+al+                  
  CDO70181.1  39 KRVSLAIDEAIRLEDKQRKKRKPVRLLLLGQSESGKSTTLRQFQRLYTPNaFREE--RIlWRAVIQLNIVRSIHTILDALKDvrrrdvypsstytsD-- 133
                 6899*******************************************88878888..788**********************777777666665550.. PP

                 ....................HHHC-SS-SCCCS-HCHHHH..........................................HHCCHHC.......... CS
     G-alpha  84 elsesf..............elqelkerldplkkveasliaklssateee................................qeiefnp.......... 126
                      +              +l+el++rl+pl ++e+ liakl++++e e                                qei+++p          
  CDO70181.1 134 -----PdsdsesenhvslpyHLEELRRRLHPLHHIESLLIAKLVPPNEHEattlgvggsnsvngnvpyygnahgapsrafhhQEIFVRPgaswktrsqg 227
                 .....144445555666666**************************************************************88888887766544444 PP

                 -HCHHH.......................HHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEEC.... CS
     G-alpha 127 raevge.......................dikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfev.... 198
                 r                            d+++Lwndp+++++++rr ki+le++ +++l+dl r+ts +Y p+ddD+lkarlktvG+se++f +    
  CDO70181.1 228 R----PqsagttgqetidesqtvlhrccaDMISLWNDPVVRQVLRRR-KIRLEESPGFYLNDLPRVTSLSYFPSDDDVLKARLKTVGVSEYSFHMeagp 321
                 1....044455556666677777777777******************.*************************************************** PP

                 T-TEEEEEEEE-SSHHH.....HHGTCCCTTTE CS
     G-alpha 199 dsklefrivdvgGqrse.....rkkWvpffddv 226
                 ++++e+ri+dvgG+rs+       +Wvpffdd+
  CDO70181.1 322 ETGTEWRIIDVGGSRSQvcisgVTTWVPFFDDA 354
                 77***************9999989******985 PP

  == domain 2  score: 117.9 bits;  conditional E-value: 2.8e-37
                 HHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS.-GGGCCTT--H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHH CS
     G-alpha 252 eeslklFkeicnnkllkntpiiLflnKlDileeKlkkg.klskyfpsyegrkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkvies 349
                 e+s+ l+ke+c+nkll++++++LflnK+Dil +Klk+g +l+ky++s+++r+n+ e v ky+r+kF +ih+e+s+ +rk+y ++ts+tdt+++ ++i+s
  CDO70181.1 357 EDSVLLWKEVCSNKLLAKVDLVLFLNKCDILASKLKSGiRLAKYVRSFGDRPNEPEVVEKYFRSKFGAIHREHSPIPRKFYGFCTSVTDTTTTGGIIAS 455
                 79************************************************************************************************* PP

                 HHHHH CS
     G-alpha 350 vrdti 354
                 v+d++
  CDO70181.1 456 VKDMV 460
                 ***96 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06    0.0025      21      67 ..      46      93 ..      27     116 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
        TniB 21 erLeeLleypkrkrm.pnlllvGdsnnGKtmivekFarlhppekdeda 67
                ++  +L ++ ++kr    lll+G+s+ GK++ +++F+rl++p+   ++
  CDO70181.1 46 DEAIRLEDKQRKKRKpVRLLLLGQSESGKSTTLRQFQRLYTPNAFREE 93
                444556667666666257999******************988764444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.6e-05     0.032      25      50 ..      64      89 ..      52      93 .. 0.82
   2 ?   -3.5   0.1       4.5     9e+03      37      43 ..     111     117 ..     111     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
      AAA_29 25 tlltGpsGsGKSTllDAiqalLvpak 50
                 ll G+s+sGKST l  +q l +p+ 
  CDO70181.1 64 LLLLGQSESGKSTTLRQFQRLYTPNA 89
                79***********9999999888876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.5
      AAA_29  37 TllDAiq 43 
                 T+lDA++
  CDO70181.1 111 TILDALK 117
                 9****97 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00028      0.55       7      35 ..      54      82 ..      49      88 .. 0.88
   2 ?    2.2   0.0     0.053   1.1e+02     106     137 ..     365     396 ..     354     410 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00028
                GGTT.TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  7 klklkkkelrilllGLDnaGKtTilkklk 35
                k+++k+k +r+lllG  ++GK+T l +++
  CDO70181.1 54 KQRKKRKPVRLLLLGQSESGKSTTLRQFQ 82
                66777999*****************9987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.053
                 HHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHH CS
         Arf 106 alleeeelkevallvlaNKqDlpealseeelr 137
                 ++ +++ l++v l+++ NK D+  +  ++ +r
  CDO70181.1 365 EVCSNKLLAKVDLVLFLNKCDILASKLKSGIR 396
                 566778899************98887766665 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.031      14      43 ..      51      81 ..      42      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                HTTS.-SSS---EEEEE-SSSSSTTTTHHHH CS
        DAP3 14 lkka.dkkkkvkrlvltGekgsGKSvlLlqa 43
                l+++  kk+k +rl+l G+  sGKS++L q 
  CDO70181.1 51 LEDKqRKKRKPVRLLLLGQSESGKSTTLRQF 81
                5556599*********************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.049      22     132 ..      59     159 ..      46     169 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea...s 117
                   p  +ll G+s +GKs+ +r+++r ++ +     + + ++         l++a  +  ++r +++ +++ +  + r+  ++++  +++++++e+    
  CDO70181.1  59 RKPVRLLLLGQSESGKSTTLRQFQRLYTPN-----AFREERI--------LWRAVIQLNIVRSIHTILDALKDVRRRDVYPSSTYTSDPDSDSESenhV 144
                 445789******************977777.....3333333........4444445566666666655544444444444443344444444444557 PP

      AAA_16 118 rllellkrllallsr 132
                 +l ++l +l ++l++
  CDO70181.1 145 SLPYHLEELRRRLHP 159
                 777777777766665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     4e-05      0.08       6      38 ..      52      83 ..      46      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  Zeta_toxin  6 kdkkypsqerPklillgGqpGAGKselaellkd 38
                +dk+  ++++P+ +ll Gq+ +GKs++++ +++
  CDO70181.1 52 EDKQ-RKKRKPVRLLLLGQSESGKSTTLRQFQR 83
                4444.4669********************9987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00021      0.41       2      25 ..      61      83 ..      60     120 .. 0.88
   2 ?   -1.9   0.0       1.2   2.4e+03     157     171 ..     368     382 ..     362     396 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
      AAA_24  2 klkiliyGpsgiGKTtlakelgpk 25
                ++++l+ G+s++GK+t+++++ ++
  CDO70181.1 61 PVRLLLLGQSESGKSTTLRQF-QR 83
                6799****************9.33 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
      AAA_24 157 anelkeevDlvlran 171
                 +n+l  +vDlvl++n
  CDO70181.1 368 SNKLLAKVDLVLFLN 382
                 689999*******97 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.33      13      42 ..      63      95 ..      57     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                EEEEEESTTSSHHHHHHHHTTSS--...SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp...teGei 42
                ++ ++G++ +GKSt l+ + +l++p    e++i
  CDO70181.1 63 RLLLLGQSESGKSTTLRQFQRLYTPnafREERI 95
                5789********************966666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3101.13
//
Query:       CDO70182.1  [L=1231]
Description: hypothetical protein BN946_scf184774.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.2e-137  456.5   7.6   5.5e-136  453.4   7.6    2.1  1  HMG-CoA_red     Hydroxymethylglutaryl-coenzyme A reductase
    6.9e-19   68.2   0.5    1.8e-18   66.9   0.5    1.7  1  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
    4.9e-06   24.9   0.7    7.2e-06   24.4   0.7    1.1  1  Patched         Patched family
  ------ inclusion threshold ------
      0.061   13.2   0.1       0.12   12.2   0.1    1.5  1  HPIH            N-terminal domain with HPIH motif


Domain annotation for each model (and alignments):
>> HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.4   7.6  1.2e-139  5.5e-136       1     367 []     799    1192 ..     799    1192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 453.4 bits;  conditional E-value: 1.2e-139
                   -HHHHHHHHHH...S-HHHHHHHTT----.HHHHHHHSSS---------EEEEEEEETTEEEEEEE---STTHHHHHHHHHHHHHHTT-B.EEEE- CS
  HMG-CoA_red    1 aveeRrkllee...lteeeleelkeesld.eevadkmiEnviGyvqlPlGvagpllingkeylvPmAteEgslvAsasrgakainesgGvkttvlk 92  
                   av++Rr+l+++   +++ e++ ++ +++d ++v+++++EnviGy++lPlG+agpl+i+g  y +PmAt Eg+lvAs+srg+ka+n++gGv+t+++ 
   CDO70182.1  799 AVRIRRALISRasrTKTLETSLIPMKDYDySRVMGACCENVIGYIPLPLGIAGPLKIDGLLYPIPMATAEGTLVASTSRGCKALNAGGGVTTVLTY 894 
                   5889*****8854333333444699*********************************************************************** PP

                   ---EEEEEEEE.--S-HHHHHHHHHTHHHHHHHHHHCSHHCCT-EEEEEEEEE-SSEEEEEEEEE-TTC--HHHHHHHHHHHHHHHHHHHTSEEEE CS
  HMG-CoA_red   93 dgmtraqvvllesvedaaelkkwiekkeeleelanaaestsrggglkdievvlagrlvvlrlkvdtgDAmGaNmvnkateaaaelieeefgeeell 188 
                   dgmtr++++ ++s+ +aae+k+wie++e +  +++a+estsr+++l++i+++lagr++++r+ ++tgDAmG+Nm++kate+a+e++ +ef+e+++l
   CDO70182.1  895 DGMTRGPAIDFPSIVRAAEAKAWIESDEGYAIIKDAFESTSRFARLQRIKCALAGRTLFVRFATRTGDAMGMNMISKATEKALEVLAREFPEMVVL 990 
                   ************************************************************************************************ PP

                   EEE-S--GGGEEEEEEEEEHHHH..-SSTTHHHHHHHHHHHHHHHHHH-HHHH....HHHHHHH........HHHHHHHHHHTT--HHHHHHHHHH CS
  HMG-CoA_red  189 silsNlctdkkasainaiegrgksvvaeatigeevvekilkasaealvdlnra.n.igtankGi.ggfnahaaNgiaAvflAtGqDlaaveessha 281 
                   ++++N+ctdkk++ain+iegrgks+vaea+++ +vv+ +lk+++e+l ++n++ n +g+a++G+ ggfnahaaN+++A++lAtGqD+a+++ess++
   CDO70182.1  991 CLSGNYCTDKKPAAINWIEGRGKSIVAEAVVPGKVVKTVLKTTVESLCNVNTKkNlVGSAMAGSvGGFNAHAANILTAIYLATGQDPAQNVESSNC 1086
                   ************************************************************************************************ PP

                   HTTSEEETTTE..............EEEEEEEE.----SBSHHHHH-HHHHHHHHTT---HH.........HHHHHHHHHHHHHHHHHHHHHT--- CS
  HMG-CoA_red  282 iaaleevedgd..............lygsvtlPsleVGtvGGgtklppqaellkllgvkgak......nakeLaeiiaavgLAqelsalrALaaeg 357 
                   i+++e +++g+                    +P++eVGtvGGgt l pq+++l++lgv ga+      na++La+iiaa+++A+els+l+ALaa++
   CDO70182.1 1087 ITLMEPTNNGEdllmtvsmpcxesxXXXXXXMPCIEVGTVGGGTILAPQQAVLEMLGVLGAHptnpgqNAQQLARIIAAAVMAGELSLLSALAAGH 1182
                   ***7777555443322222222222555566789************************************************************** PP

                   --HHHHHHHH CS
  HMG-CoA_red  358 lqkgHmklhr 367 
                   l+++H++++r
   CDO70182.1 1183 LVRAHLAHNR 1192
                   *******997 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.5   3.9e-22   1.8e-18       3     145 ..     252     404 ..     250     412 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 3.9e-22
                     HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH.HHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH.........HHHHHHHHHHHCCCCHH CS
  Sterol-sensing   3 kskfgLglagviivllsvasslgllaylgltltlii.levlPflvlavgvdnifvlvkavqrtsrslde.........seriaealgevgpsill 87 
                      s f+L+ +++  +++s + +l l+  l+++l +i  +e lPflv  vg d  ++l +av + ++ l+           + + eal +vg  il 
      CDO70182.1 252 GSNFWLSTGIFSSAIISFLFTLPLCRSLDIPLDPIAlTEALPFLVCTVGFDKPLRLARAVMAHPHMLKPqedgrmkaaGSVVLEALDRVGNMILR 346
                     589*****************************9886269*********************999988877666666555566789*********** PP

                     CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTXX CS
  Sterol-sensing  88 tsltellalllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreeserl 145
                      ++ e+++ll+g+ ++v +++eFc  aava+++d l+  t+++avL++ ++ ++ +++
      CDO70182.1 347 DYALEIAVLLVGVNSRVGGLKEFCSVAAVALAMDCLMTFTLYTAVLTIMVEVRRIKKV 404
                     ***********************************************98766555444 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.7   1.6e-09   7.2e-06     213     418 ..     220     441 ..     198     502 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.6e-09
     Patched 213 rnaktllpflvvtiaiLlvfsiivsvvlssdalkidwvrskpilailgvlspvlAivsslGlllwlGfrfnsi..vtvtPFLvLaiGvDdmflmvaawk 309
                 ++a+ l   +v+t  iL+  ++i  + +s        + s ++l+     s++++ +  l l   l ++   i  +   PFLv  +G D    ++ a++
  CDO70182.1 220 KKADSLDILVVLTGYILMHVTFIRLFLSSR------ALGSNFWLSTGIFSSAIISFLFTLPLCRSLDIPLDPIalTEALPFLVCTVGFDKPLRLARAVM 312
                 555555555555555555555555554444......3555555554444445555555555555555555444115578**********9988888888 PP

     Patched 310 rteakls.........vkkrigealseagvaitiTslTdvlsFgiGaittlpaiqlFciytavailfdfiYqitffaavlaiaakaeaegrhsllliie 399
                  +   l+         +   + eal  +g  i+     +++   +G+ + + +++ Fc ++ava+++d + ++t+++avl i+ ++ + ++   + +  
  CDO70182.1 313 AHPHMLKpqedgrmkaAGSVVLEALDRVGNMILRDYALEIAVLLVGVNSRVGGLKEFCSVAAVALAMDCLMTFTLYTAVLTIMVEVRRIKKVREMSR-- 409
                 777666667667766555667799999********************************************************99998887555544.. PP

     Patched 400 keespsklqeiesessek..............d 418
                  ++s+s    ++++++++               
  CDO70182.1 410 -SRSNSITAVTANGTAVRgamsrsgskqnlaaT 441
                 .44444334444444444333334444444442 PP

>> HPIH  N-terminal domain with HPIH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.6e-05      0.12       5      38 ..       4      37 ..       1     111 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
        HPIH  5 llaslskfaakhPIhtIvvvallasttYlsvlee 38
                ll+ ls ++   PI t+v+v +la+ +Y ++l +
  CDO70182.1  4 LLRPLSTHTVFSPIETVVTVFVLATLAYFHILSG 37
                67778999999******************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 8225.82
//
Query:       CDO70183.1  [L=452]
Description: hypothetical protein BN946_scf184774.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.4   10.5   2.4         22    4.8   1.1    2.4  2  VIT1      VIT family


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0013        24     149     189 ..     112     158 ..      20     177 .. 0.84
   2 ?    4.8   1.1    0.0012        22     138     196 ..     215     277 ..     190     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0013
        VIT1 149 gliPllpylfvesvglalvvsiavtllalllfGavkallt......g 189
                 +l+P++ +  ++ + + l++s++v++l  + +G++ ++ +      +
  CDO70183.1 112 SLVPVFQASALAVRLNTLWFSALVCSLLSASLGLLVKQWLreylagS 158
                 566777776666899******************87655543555543 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0012
        VIT1 138 AlssalsfliGgliPllpylfve...svglalvvsiavtllalllfGavkalltgssk.lvsa 196
                 A ++++  ++Ggl+ l+  l+ +   +       s+++++l+ +l Ga+ a++++  + l  a
  CDO70183.1 215 ASVVSVVVATGGLLGLMTSLLPPlypDCPYKSPQSWLLCILMQALKGALTAIASRYHWhLQHA 277
                 667777888899998888888877665777778888899999******999999888866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3035.38
//
Query:       CDO70184.1  [L=315]
Description: hypothetical protein BN946_scf184774.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-41  142.2   0.0    1.5e-41  141.7   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    3.9e-11   42.8   0.0    1.3e-09   37.8   0.0    2.1  2  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    4.7e-05   23.6   0.0    0.00012   22.2   0.0    1.6  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    0.00076   20.0   0.0     0.0015   19.1   0.0    1.6  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.079   12.5   0.0       0.13   11.8   0.0    1.4  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   4.2e-45   1.5e-41       1     178 []      82     280 ..      82     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 4.2e-45
                   HHHHHHHHTTHHHHHHHHHTTCC....HTTCCGSBS-GT......TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH..HHH.....CHHHHTC CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew....ksekallgkels......gktvGiiGlGrIGqavakrlkafgmkviaydrskk..kee.....eeeelgv 80 
                   ++l+l++ r+ +e+ + v++g+w    +s+  + g +ls       +t G iG+GrI++a+  rl +fg+    y  +++  +++      ++++g+
    CDO70184.1  82 IMLALMAGRNAKETTQIVQSGQWpnhvWSPFGFCGPQLSatptspTRTAGFIGFGRIAKATLARLVPFGFTRCLYTANPStpPNAaadaqVAAKYGI 178
                   5899*******************999977777777765522222268***********************777776666533222444554445554 PP

                   ...EECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSG.TCHHHHHSTTEEE CS
  2-Hacid_dh_C  81 ...elvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplp.edspllelpnvil 173
                      + v++ el +esD++++ +p  ++t+h++n++ l++mkk+a+l+Nt+RG+lvd +aL++aL++g+++ga++Dv+e ep   +++pl+++p++++
    CDO70184.1 179 kevHRVNMAELARESDVIFVLAPGGQNTYHIVNENFLKQMKKTAVLVNTSRGTLVDSDALAKALREGWLHGAGVDVVEGEPDVdANHPLVKAPRCVV 275
                   3226679*************************************************************************7543899********** PP

                   -SS-T CS
  2-Hacid_dh_C 174 tPHia 178
                    PHia
    CDO70184.1 276 LPHIA 280
                   ****8 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.023        82      19      52 ..       9      45 ..       1      48 [. 0.82
   2 !   37.8   0.0   3.5e-13   1.3e-09      73     134 .]      52     312 ..      51     312 .. 0.99

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.023
                TEEEEEES...CSSHHHCHHHHTTESEEEE-TTS-BS CS
                xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 19 gvevevkd...ellteellekakdadalivrsntkvt 52
                ++ev+v+    + +++ lle a++a ++iv  ++k++
  CDO70184.1  9 ELEVVVWPedtSCDRDWLLENAPGATGIIVLLSDKLS 45
                457778777889999***************9999987 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 3.5e-13
                 TTB-HHHHHHTT-EEEE-TTTTHHHHHHHH..................................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
  2-Hacid_dh  73 DnvDldaakerGilVtnvpgystesvAElt..................................................................... 102
                 +++D++ +++rG+++  +p++ t++vA+l                                                                      
  CDO70184.1  52 EHIDVPELAKRGVKLGYTPDVLTDAVADLSimlalmagrnakettqivqsgqwpnhvwspfgfcgpqlsatptsptrtagfigfgriakatlarlvpfg 150
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CDO70184.1 151 ftrclytanpstppnaaadaqvaakygikevhrvnmaelaresdvifvlapggqntyhivnenflkqmkktavlvntsrgtlvdsdalakalregwlhg 249
                 *************************************************************************************************** PP

                 ...............................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBCS CS
                 ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...............................aaTeeaqeniaeeaaenlvaflkgespanavn 134
                                                +aT+e++ ++a+ a++nlv+ + g++++ ++n
  CDO70184.1 250 agvdvvegepdvdanhplvkaprcvvlphiaSATTETRIEMATLAVNNLVNGIFGKPMPAELN 312
                 *******************************************************99987765 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   3.7e+03      37      73 ..      58      96 ..      52     106 .. 0.67
   2 !   22.2   0.0   3.4e-08   0.00012       2     118 ..     130     256 ..     129     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                   HHHHTTEEE-SSHHHHHHHC..SEEEE-SSSHHHHHHHH CS
  NAD_binding_2 37 elvaegakaaesieelvasl..dvvitmvkagkavdevi 73
                   el+++g+k+ +++  l++++    +++ + ag++ +e++
     CDO70184.1 58 ELAKRGVKLGYTPDVLTDAVadLSIMLALMAGRNAKETT 96
                   666777777777776666665445677777777766665 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 3.4e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.......EEE-S..SHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.......akaae..sieelvasldvvitmvkagkavdevieg.llealkkgdili 87 
                     gfiG G + +    +l+  g++ ++y  +++   +++a+        +k ++  +++el+++ dv++++ + g+++ +++++  l+++kk ++l+
     CDO70184.1 130 AGFIGFGRIAKATLARLVPFGFTRCLYTANPSTPPNAAADAqvaakygIKEVHrvNMAELARESDVIFVLAPGGQNTYHIVNEnFLKQMKKTAVLV 225
                    59**************************998666555555445556775444411566999999*****************9999*********** PP

                    E-S---HHHHHHHHHHHHHTT-EEEEEEEES CS
  NAD_binding_2  88 dgstsspedtrelakelkekglkfldaPVSG 118
                    ++s     d+  lak+l+e  l+  ++ V  
     CDO70184.1 226 NTSRGTLVDSDALAKALREGWLHGAGVDVVE 256
                    *****************99877766666655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.2e-07    0.0015       3      71 ..     131     202 ..     129     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.2e-07
                    EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHHH-SEEEE-S-H CS
  F420_oxidored   3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaaeeadvvvlavkp 71 
                    g+iG+G++++a + +l+  g   + ++ an ++p  a++ a+ +      +v  v+ +e+a+e+dv+++  + 
     CDO70184.1 131 GFIGFGRIAKATLARLVPFG-FTRCLYTANPSTPPNAAADAQVAAkygiKEVHRVNMAELARESDVIFVLAPG 202
                    9*******************.556677788888877777665444455778899999***********98774 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.6e-05      0.13      40      92 ..     169     225 ..     127     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.6e-05
                 HHHHHHHTT-E...EEEHHHHHHT-SEEEE-S-HHH.HHHHHHHHTGGG--TT-EEE CS
        IlvN  40 svkkAkeegfe...vltvaeavkkadvvmiliPDel.qkevyeeeiepnlkegkala 92 
                  ++ A + g++    +++ae+++++dv+++l+P  +   ++++e+  +++k+ ++l+
  CDO70184.1 169 DAQVAAKYGIKevhRVNMAELARESDVIFVLAPGGQnTYHIVNENFLKQMKKTAVLV 225
                 4556666666421135689**************865156899*********999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2361.65
//
Query:       CDO70185.1  [L=1029]
Description: hypothetical protein BN946_scf184774.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-25   87.8  32.2    5.7e-14   51.8   7.0    3.2  3  Ion_trans_2  Ion channel
  ------ inclusion threshold ------
      0.045   12.5   2.5        1.6    7.4   1.1    2.5  2  DUF2207      Predicted membrane protein (DUF2207)
       0.17   11.9   0.1       0.51   10.3   0.1    1.8  1  TOM13        Outer membrane protein TOM13
       0.59    9.4   7.1       0.42    9.9   2.0    2.5  2  7tm_1        7 transmembrane receptor (rhodopsin family)
       0.87   10.2   8.6         16    6.1   0.0    4.4  6  Ctr          Ctr copper transporter family


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4      0.66   2.4e+03       8      34 ..     214     241 ..     200     248 .. 0.63
   2 !   51.8   7.0   1.6e-17   5.7e-14       1      75 [.     282     353 ..     282     357 .. 0.93
   3 !   46.1  10.9   9.8e-16   3.5e-12       3      75 ..     675     744 ..     672     747 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.66
                  HHHHHHHHT.....T---HHHHHHHHHH CS
  Ion_trans_2   8 ifgaviysleeg.wekwsfldalYfsfv 34 
                  i++++++ +e+    ++++ +a+++++ 
   CDO70185.1 214 IVAVTVFGIEHRfDDGFTYGEAFWMTLC 241
                  4444444443332446699999999764 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 1.6e-17
                  HHHHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   1 ivlllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgk 75 
                  ivll++++fga+i s+   +    f++ lYfs+v++ TiG+Gdivp++ + r+ t++yil+G++ +++++a++ +
   CDO70185.1 282 IVLLVYIAFGALINSI---LLHLPFINGLYFSVVSIETIGFGDIVPHSTGARVWTCFYILFGVINVGVVIAMFRE 353
                  6899************...8888************************6666*******************99976 PP

  == domain 3  score: 46.1 bits;  conditional E-value: 9.8e-16
                  HHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   3 lllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgk 75 
                  ++l++++g+ i+s     e+w + +a+Yf+f  + T GYGd++p+t+agr + +v+ llG+++++++++vl++
   CDO70185.1 675 FFLFWTVGSGIFSA---TEGWPYGTAMYFCFCAFVTTGYGDFAPVTPAGRSVFVVWSLLGVGTLTIVVSVLQE 744
                  45555666666666...5888************************************************9986 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.1   0.00044       1.6     367     447 ..     258     369 ..     234     375 .. 0.81
   2 ?    3.6   0.0    0.0064        23     376     430 ..     657     743 ..     600     764 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00044
     DUF2207 367 kergyfdkkgkkklkklsalglgliilglilillallllvll...............................lvfllilllillliaiivlllfsrll 434
                  +   f+++g+  + k + l +++i+l+++++++al+  +ll                               +  ++++l++++ ++++++++  + l
  CDO70185.1 258 IRTPDFSRRGSGLTRKQRSLMIVFIVLLVYIAFGALINSILLhlpfinglyfsvvsietigfgdivphstgarVWTCFYILFGVINVGVVIAMFRETAL 356
                 5556677777777777778888888888888888887777778888*************************9999999999999999999999999999 PP

     DUF2207 435 grrteeGaellak 447
                 ++   e+++ ++k
  CDO70185.1 357 EAMEVEYRRRMRK 369
                 9999999988876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0064
     DUF2207 376 gkkklkklsalglgliilglilillallllvll.................................lvfllilllillliaiivlllf 430
                 + +++k + + + ++++l++++ +++ + +  +                                 +vf ++ ll+++ + i+v +l 
  CDO70185.1 657 EAEETKVYYVKLSIAFLLFFLFWTVGSGIFS-AtegwpygtamyfcfcafvttgygdfapvtpagrSVFVVWSLLGVGTLTIVVSVLQ 743
                 3333333333333333333333322222222.22344666666666666666666666666666665555555555555555555555 PP

>> TOM13  Outer membrane protein TOM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00014      0.51      44      71 ..     295     330 ..     265     337 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
       TOM13  44 aainlvLPFinGlm........LGfGellAhEiafr 71 
                  +i l LPFinGl         +GfG+++ h  + r
  CDO70185.1 295 NSILLHLPFINGLYfsvvsietIGFGDIVPHSTGAR 330
                 3555889******63333444479999999987655 PP

>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00012      0.42       6      76 ..     186     253 ..     182     256 .. 0.80
   2 ?    1.2   0.2     0.053   1.9e+02      18      60 ..     660     701 ..     653     710 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
                 HHHHHHSTTTCSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHSSCHSHHHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1   6 llviltkkslrtstnyfilsLaiaDlllgllvlpfaivyelttgewlfgevlCklwlsldvflstasilnl 76 
                 l++ + +k+++t+t + i+ L++ Dl+  ++ + ++ +++ + + +++ge++   ++ + +++st+s ++l
  CDO70185.1 186 LVLRFLEKRVQTVTLVCIVALTVHDLIN-IVAVTVFGIEHRFDDGFTYGEAF--WMTLCSTIASTVSNISL 253
                 44557799*******************9.77888888888899999999997..55566677777776666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.053
                 HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHSSCHSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1  18 stnyfilsLaiaDlllgllvlpfaivyelttgewlfgevlCkl 60 
                  t+++ + L+ia ll+ l+ +    +  +t + w++g+++  +
  CDO70185.1 660 ETKVYYVKLSIAFLLFFLFWTVGSGIFSAT-EGWPYGTAMYFC 701
                 68999***********99888888888885.******997433 PP

>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2         5   1.8e+04      77      80 ..      40      43 ..      17      80 .. 0.47
   2 ?   -2.8   0.2       2.5   8.8e+03      24      42 ..     174     192 ..     170     199 .. 0.75
   3 ?    6.1   0.0    0.0044        16       2      64 ..     308     375 ..     307     478 .. 0.77
   4 ?    0.3   0.0      0.27   9.8e+02      83     135 ..     619     687 ..     555     691 .. 0.61
   5 ?    5.9   0.0    0.0052        19      21      84 ..     696     813 ..     677     860 .. 0.56
   6 ?   -1.7   0.2       1.1   4.1e+03      64      84 ..     948     987 ..     915    1015 .. 0.39

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 5
         Ctr 77 seee 80
                +++e
  CDO70185.1 40 QRSE 43
                1111 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
         Ctr  24 lagsciglfllaifyeflr 42 
                 + ++c++l  +a++++fl+
  CDO70185.1 174 ISITCAVLANVALVLRFLE 192
                 5578999999999999887 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0044
         Ctr   2 lFhwstddtilfrsWritskgqlagscigl........fllaifyeflralrerlerewdrhlarsrekrk 64 
                 +F+   ++ti f   +++s+g+ + +c+ +        +++a+f e      e +e e++r++ +sr++r+
  CDO70185.1 308 YFSVVSIETIGFGDIVPHSTGARVWTCFYIlfgvinvgVVIAMFRETAL---EAMEVEYRRRMRKSRRRRR 375
                 8999999***********************6777666666666666544...4555555554432222222 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.27
         Ctr  83 a..................kstsslskseakksvrttpe.....qqlirallyvvqvllaYilMLlvMtyNvglfl 135
                 a                  ++  s+++  ++       e     ++ +++ +y v++ +a++l  l+ t   g+f 
  CDO70185.1 619 AtsslnvkhhsatkwlkefSRVPSERPAWTY-------EnfvngVEAEETKVYYVKLSIAFLLFFLFWTVGSGIFS 687
                 1222332222222333323333333444444.......14445555999999999999999999998887777765 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0052
         Ctr  21 kgqlagscigl..............................fllaifyeflralrerlerewdrhla...........rsrekrkaassplvdssssse 78 
                 +++++ +c+++                              +    ++ +l+   e  + ++++ l+           r+r++++++++p+   +++s+
  CDO70185.1 696 TAMYFCFCAFVttgygdfapvtpagrsvfvvwsllgvgtltI----VVSVLQ---EASSSRYKSALHsrvfdkavkkyRKRNLQEHKQRPRTVFKDTSQ 787
                 678888888888888888888888888888887766654442....333333...33333344444222333444445444444555554444444444 PP

         Ctr  79 eeaea....................k 84 
                 ++a++                     
  CDO70185.1 788 HTAAQngssrrdrpadgtrrtdssgL 813
                 43333344444444444333333332 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.1
         Ctr  64 kaassplvdssssseeeaea............................k 84 
                 +a++++  +s         +                            +
  CDO70185.1 948 MASAQKHAAS---------KsasategpptgdavedgarsesplpvprT 987
                 1111111111.........011112233445555555555555554441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1029 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1245  (0.0694406); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 6519.90
//
Query:       CDO70186.1  [L=970]
Description: hypothetical protein BN946_scf184774.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-12   45.5   0.0    1.1e-11   44.4   0.0    1.5  1  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0     6e-16   1.1e-11      28     148 ..     337     455 ..     323     464 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6e-16
  Transposase_21  28 rnvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlra 122
                      ++ l ++ dG   + + +    +W  + i + l P +c k+++++   +ipGp++P ++++ +l P +  +  l +eG++ +da +++ f+   
      CDO70186.1 337 DDFALMFSVDGAQLYEHKA--SDCWIYIWIIFELGPDKCYKKRYVFPGAIIPGPRKP-RNLESFLFPGLAHISALQKEGLKIWDAANKRLFTSFP 428
                     5666777788888777544..468*********************************.69*********************************** PP

  Transposase_21 123 vllwtindfPalstlsGlst.kgklac 148
                     v++++  d Pa+++l Gl+  +g ++c
      CDO70186.1 429 VIIFATADSPAMAYLNGLVGhHGAQGC 455
                     *****************9861466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6985.36
//
Query:       CDO70187.1  [L=101]
Description: hypothetical protein BN946_scf184774.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 760.46
//
Query:       CDO70188.1  [L=95]
Description: hypothetical protein BN946_scf184774.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.7   0.0      0.093   13.1   0.0    1.7  2  TSC22     TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.18   3.2e+03      29      39 ..       3      13 ..       1      14 [. 0.78
   2 ?   13.1   0.0   5.2e-06     0.093      24      45 ..      71      92 ..      68      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.18
       TSC22 29 rnseleeENsl 39
                + ++ e+EN++
  CDO70188.1  3 HHHHFEKENNF 13
                5688999*985 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.2e-06
       TSC22 24 keLeernseleeENslLkalas 45
                ++L++r+ +le ENs+L+ +++
  CDO70188.1 71 ADLTYRIGRLELENSQLRYIIP 92
                89****************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 715.46
//
Query:       CDO70189.1  [L=63]
Description: hypothetical protein BN946_scf184905.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   10.9   2.2       0.14   10.8   2.2    1.0  1  Med17     Subunit 17 of Mediator complex


Domain annotation for each model (and alignments):
>> Med17  Subunit 17 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.2   7.7e-06      0.14      55      97 ..       9      58 ..       2      63 .] 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.7e-06
                HHH..HHHCHHHHHHHCCHHHHHSS-S---GG.....GTTCHHHHHHHHH CS
       Med17 55 rge..frdlsEesLreeiekekqqkeekdeee.....eeeeeeeekkeDa 97
                r +  f+d+s+++L e i+ e++ +++++ e      +   e+++++ D 
  CDO70189.1  9 RTPvwFADISQKRLDELISSEDNGEDDEEPEVsrelaADAGEDKANESDS 58
                44478****************99986544433666663333334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 450.88
//
Query:       CDO70190.1  [L=212]
Description: hypothetical protein BN946_scf184905.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.37s 00:00:00.98 Elapsed: 00:00:00.59
# Mc/sec: 1086.84
//
Query:       CDO70191.1  [L=143]
Description: hypothetical protein BN946_scf184905.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.35s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 772.97
//
Query:       CDO70192.1  [L=207]
Description: hypothetical protein BN946_scf184905.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 1177.19
//
Query:       CDO70193.1  [L=273]
Description: hypothetical protein BN946_scf184905.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1745.57
//
Query:       CDO70194.1  [L=253]
Description: hypothetical protein BN946_scf184905.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1723.60
//
Query:       CDO70195.1  [L=260]
Description: hypothetical protein BN946_scf184905.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-46  158.6   0.0    3.3e-44  151.2   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   1.9e-48   3.3e-44      33     292 ..      28     244 ..      14     246 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 1.9e-48
                   -EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHH CS
  Aldo_ket_red  33 nffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvk 129
                   +++DtA++Y   ++e+ +Gea+ +s+ +re++++++K+      +++ +  e+  +++++sl +Lg dy Dl+l+H p +    ++e+++al el++
    CDO70195.1  28 RHIDTARYY---KNEDQVGEAIRRSGIPREQIFVTSKI------YHPEHGYESTKRAVQDSLDKLGYDYWDLYLIHSPLSGKRTRLETWKALIELRD 115
                   79*******...**************************......9999*********************************999************* PP

                   TTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHH CS
  Aldo_ket_red 130 eGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknl 226
                   +Gki++iGvSn+s +++++++  ++  ++++q+e +++   +++ ++e+c+k+g+ + ayspl +G l+                            
    CDO70195.1 116 AGKIKSIGVSNYSGRHIDEIHDAGYELPAVNQIELHPF--CQQRPIVEYCRKHGIVVQAYSPLIQGKLD---------------------------- 182
                   ********************9999999***********..****************************9............................ PP

                   HHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 227 daaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                      + ++ela+++ +++ q+a+r+ l  + + i++p++  +e++  n++++++++s+e+++++d l
    CDO70195.1 183 --EPLFKELAAKYQKDVGQIAIRWSL--QHRFIPLPKSACPERVASNAQVFDFNISKEDMQRMDTL 244
                   ..5789********************..899********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1916.13
//
Query:       CDO70196.1  [L=525]
Description: hypothetical protein BN946_scf184905.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-45  153.7   0.0    5.4e-34  117.7   0.0    2.3  2  Aldo_ket_red  Aldo/keto reductase family
    2.4e-23   82.0   5.2    7.1e-06   26.7   0.0    6.4  6  WD40          WD domain, G-beta repeat
    1.7e-06   28.2   0.0        1.5    9.1   0.0    4.3  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
  ------ inclusion threshold ------
       0.01   15.2   0.0       0.05   12.9   0.0    2.0  3  WD40_like     WD40-like domain
       0.01   15.3   0.2       0.25   10.7   0.0    2.3  2  DUF5046       Domain of unknown function (DUF5046)
      0.056   13.0   0.4        0.2   11.2   0.4    1.9  1  PQQ_2         PQQ-like domain
        0.2   10.3   0.4        1.1    7.8   0.1    2.3  3  Nup160        Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   2.1e-37   5.4e-34      33     196 ..     294     446 ..     283     450 .. 0.96
   2 !   34.8   0.0   3.8e-12   9.8e-09     227     292 ..     446     509 ..     444     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 2.1e-37
                   -EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHH CS
  Aldo_ket_red  33 nffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvk 129
                   +++D+A++Y   ++ee +G+a+ +s+ +r+e++i++Kv      +++ +      +++++slk++g dy+Dl l+H p ++ ++++ +++al e +k
    CDO70196.1 294 RHIDSARMY---RNEEQVGQAVRESGIPRDEIFITSKV------NNPEHGFGTALAAVDDSLKKFGFDYIDLMLIHSPLSDKERRLQTWKALIEAKK 381
                   69*******...**************************......99999************************************************ PP

                   TTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGT CS
  Aldo_ket_red 130 eGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGl 196
                   +Gk+r iGvSn+  ++le++++ +  +++++qve +++   ++++++++c+k+g+ + ay+pl +G 
    CDO70196.1 382 QGKVRTIGVSNYGPRHLEEIREAGLETPAVNQVELHPF--CQQKEIVDYCNKHGIVVEAYTPLIRGK 446
                   ********************9999999***********..***********************9886 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 3.8e-12
                   HHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 227 daaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   ++++++ elak++ +++aql +r+ l  +++ +++p++sn++++  n++++++++s+e++a+++++
    CDO70196.1 446 KWDNKIVELAKKYHKDPAQLLVRWSL--QRGYVPLPKSSNPDRVVSNANVFDFEISSEDMATVNAM 509
                   578999********************..9********************************99875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05      0.04      13      38 .]      25      51 ..      12      51 .. 0.68
   2 !   17.4   0.1   2.4e-06    0.0061       2      38 .]      56      93 ..      55      93 .. 0.80
   3 !   26.7   0.0   2.8e-09   7.1e-06       1      38 []      97     135 ..      97     135 .. 0.94
   4 !    9.1   0.0   0.00098       2.5       5      38 .]     145     177 ..     141     177 .. 0.69
   5 ?    4.9   0.0     0.021        53       6      36 ..     186     215 ..     181     217 .. 0.72
   6 ?    5.7   0.2     0.012        30       2      38 .]     222     261 ..     221     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                EEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40 13 vtsla..fspdgawlasGsdDgtvriWd 38
                v ++a       ++++sG+ D+tvr+W+
  CDO70196.1 25 V-HVAryAKGTAKYVLSGGQDRTVRLWN 51
                5.44444444557799***********8 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.4e-06
                EEEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  2 qclrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38
                + ++++++H+  v s+ + +d++ +a sG+ D+ v +Wd
  CDO70196.1 56 TEIKSYSAHGYeVLSITVAHDNSRFAsSGG-DRQVFLWD 93
                57899****446*****8888888772556.*******9 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 2.8e-09
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 gq++r + GH + +  + f+ d + lasGs+D tvr+Wd
  CDO70196.1  97 GQTIRRIPGHmGKIFTVEFNEDATVLASGSYDSTVRLWD 135
                 57888999**999*************************9 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00098
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +tl+   + v  +  +  ++++a+Gs Dg+vr +d
  CDO70196.1 145 QTLDEArDAVQTI--HVGKSYIATGSVDGHVRTYD 177
                 5555444445555..678899**********9766 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.021
                 EEESSSSEEEEEEETTSSE.EEEEETTSEEEE CS
        WD40   6 tltGHssvtslafspdgaw.lasGsdDgtvri 36 
                  + GH +vt++  s+d++  la  + D +vr+
  CDO70196.1 186 DFLGH-PVTAVVPSQDNQTyLA-TTIDAHVRL 215
                 477**.******7777766365.588888886 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.012
                 EEEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 
                 + l  +tGH ss   ++++ f +  a +++G++ g+v  Wd
  CDO70196.1 222 KMLNDFTGHaSSsyrIRAC-FGHGEASVICGDEEGKVWAWD 261
                 567789***96679**877.555555567899999999887 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0028       7.1      33      85 ..      60     111 ..      17     115 .. 0.77
   2 !    8.1   0.0    0.0012       3.2      39      88 ..     108     158 ..     103     162 .. 0.76
   3 ?    0.5   0.0      0.29   7.5e+02      52      75 ..     163     186 ..     145     195 .. 0.86
   4 !    9.1   0.0    0.0006       1.5      34      82 ..     185     233 ..     164     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0028
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  + ++++ ev s+   +d++ +a +  d +v l d+ +g++++ ++ +  k + 
   CDO70196.1  60 SYSAHGYEVLSITVAHDNSRFASSGGDRQVFLWDVMTGQTIRRIPGHMGK-IF 111
                  55788999**********************************99888774.55 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldae..sgkvvhslsvksekavtclg 88 
                  +++  +++++d ++La +  d++vrl d    + + +++l+ +++ av++++
   CDO70196.1 108 GKIFTVEFNEDATVLASGSYDSTVRLWDLRsqNRQPIQTLDEARD-AVQTIH 158
                  688899********************9865115566777776666.466665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.29
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhs 75 
                   +a +  dg+vr +d   g++   
   CDO70196.1 163 YIATGSVDGHVRTYDLRMGELRTD 186
                  6899999*********99998766 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0006
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +d  ++ v+++  ++d++     + d +vrl+d+++gk+++ ++ ++++
   CDO70196.1 185 TDFLGHPVTAVVPSQDNQTYLATTIDAHVRLMDMSTGKMLNDFTGHASS 233
                  556778888888899999999999*****************99987765 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   4.2e+03      13      36 ..      36      59 ..      33      65 .. 0.76
   2 ?   12.9   0.0     2e-05      0.05       2     109 ..      67     178 ..      66     193 .. 0.76
   3 ?   -1.7   0.0      0.56   1.4e+03      52      76 ..     200     224 ..     194     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
   WD40_like 13 slilyGgkddkctvlkleslesvs 36
                +++l Gg+d ++++ + e ++++ 
  CDO70196.1 36 KYVLSGGQDRTVRLWNPELGTEIK 59
                688999999999988777666665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2e-05
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv.vtlDGtillsllenee..even.ekieedistvkviddkll 96 
                 e+ si + +++s ++  g d ++ + ++ +++++  + +    +  v++ +d  +l  ++ D t+ l +l+ ++   +++  +  +++ t++v +  ++
  CDO70196.1  67 EVLSITVAHDNSRFASSGGDRQVFLWDVMTGQTIRRIPGHMGKIFTVEFNEDATVLAsGSYDSTVRLWDLRSQNrqPIQTlDEARDAVQTIHVGKSYIA 165
                 678888888888888888888899999999999999999888888888888886664268899988888877765555551445677888888888888 PP

   WD40_like  97 iGtnkGsiyvfsk 109
                  G+  G++ +++ 
  CDO70196.1 166 TGSVDGHVRTYDL 178
                 8888888888765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.56
   WD40_like  52 dddlilvvtlDGtillslleneeev 76 
                 d++ +l +t+D  + l++++ +++ 
  CDO70196.1 200 DNQTYLATTIDAHVRLMDMSTGKML 224
                 6889999999999999998887754 PP

>> DUF5046  Domain of unknown function (DUF5046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.9e-05      0.25      59     122 ..     119     192 ..      79     199 .. 0.71
   2 ?    2.1   0.0     0.044   1.1e+02      91     119 ..     201     229 ..     193     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.9e-05
     DUF5046  59 avvlwnsgedsryelidletGektpvydvdardkt..........vavyatdgilrvydkttGalltdvevepv 122
                 a vl     ds+ +l+dl + +++p++  d   ++          +a  ++dg +r yd   G+l td   +pv
  CDO70196.1 119 ATVLASGSYDSTVRLWDLRSQNRQPIQTLDEARDAvqtihvgksyIATGSVDGHVRTYDLRMGELRTDFLGHPV 192
                 4455555559999*************9777543330111111111566689*****************887777 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.044
     DUF5046  91 dktvavyatdgilrvydkttGalltdvev 119
                 ++t    ++d  +r+ d +tG++l d + 
  CDO70196.1 201 NQTYLATTIDAHVRLMDMSTGKMLNDFTG 229
                 455556789****************9875 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   7.7e-05       0.2      38     228 ..      37     262 ..      31     265 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
       PQQ_2  38 tlfvatgggrlvaldaatGkvlWettl.egpvvgaplvaegrvvvva.sdgqlialdaedGkr.................................lWs 101
                 ++++++  +++  ++++ G+++ ++++   +v+++    ++  ++ + +d+q+   d  +G++                                 lW 
  CDO70196.1  37 YVLSGGQDRTVRLWNPELGTEIKSYSAhGYEVLSITVAHDNSRFASSgGDRQVFLWDVMTGQTirripghmgkiftvefnedatvlasgsydstvrLWD 135
                 566666777777777777777777777666677774444444455554444777777777777777777777777777777777777777777777888 PP

       PQQ_2 102 tqqrseepaelrssaspava.....gdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaeg.tVyassgqgrllal.dlatg 193
                   +++ +p   +  a +av      + +++ g  +g +  +d++ G+++ +             ++g +  ++v +++ ++y ++     + l d++tg
  CDO70196.1 136 LRSQNRQPIQTLDEARDAVQtihvgKSYIATGSVDGHVRTYDLRMGELRTD-------------FLGHPVTAVVPSQDnQTYLATTIDAHVRLmDMSTG 221
                 6666656666555555555555574555555555*************9422.............34444444444444444444444434555577777 PP

       PQQ_2 194 rrlwskeiss.......inglpildgdllyvvsa.gelialdr 228
                 +    +++++       i ++    + +++ +++ g+++a+d+
  CDO70196.1 222 K--MLNDFTGhasssyrIRACFGHGEASVICGDEeGKVWAWDL 262
                 6..2222222233345544444444444444443466666665 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.38   9.8e+02     238     247 ..      43      52 ..      26     100 .. 0.58
   2 ?    7.8   0.1   0.00043       1.1     226     263 ..     115     154 ..      90     168 .. 0.83
   3 ?    0.7   0.0     0.059   1.5e+02     217     248 ..     145     179 ..     137     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.38
                 TT-EEEEEET CS
      Nup160 238 rdgkLrvWnl 247
                 +d+++r+Wn 
  CDO70196.1  43 QDRTVRLWNP 52 
                 5666666663 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00043
                 ...TTTEEEEEETT-EEEEEETTTTEEEEEEE--...-SS CS
      Nup160 226 veigqtylfalsrdgkLrvWnlltgkclatidll..rdee 263
                  +++ t+l++ s d ++r+W+l+++ + + ++l+  rd++
  CDO70196.1 115 FNEDATVLASGSYDSTVRLWDLRSQNRQPIQTLDeaRDAV 154
                 33499********************999999999555444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.059
                 CEEEEET........TTTEEEEEETT-EEEEEETT CS
      Nup160 217 lsldvavavvei...gqtylfalsrdgkLrvWnll 248
                 ++ld a + v++   g++y+++ s+dg +r  +l+
  CDO70196.1 145 QTLDEARDAVQTihvGKSYIATGSVDGHVRTYDLR 179
                 555555566666667****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 3426.70
//
Query:       CDO70197.1  [L=246]
Description: hypothetical protein BN946_scf184905.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-09   36.1   0.0    1.4e-08   35.3   0.0    1.4  1  Hydrolase       haloacid dehalogenase-like hydrolase
    5.1e-08   33.2   0.0    7.2e-08   32.7   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.4e-05   23.8   0.0      6e-05   23.0   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
       0.01   15.5   0.0      0.023   14.4   0.0    1.6  1  TFA2_Winged_2   TFA2 Winged helix domain 2
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.26   10.9   0.0    1.6  1  HTH_47          winged helix-turn-helix


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.9e-12   1.4e-08      68     208 ..      73     202 ..      13     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.9e-12
                 HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGE.SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
   Hydrolase  68 ayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyf.davia 165
                    +            + l+a  +s   ++  + +++++ ++++ + +    +p++   +++Lk+++  ++ l+++n ++   +a++++     dav++
  CDO70197.1  73 NMDV---------VHRQILNAMLDSPRWKHLAALWDDNKRHELVLAWHRSDGWPDVTRGLYALKKKKM-IIALSNGNMRFLVDIAKHAD--LPwDAVLS 159
                 2222.........23445555588888888888888888888888889999***************99.******************99..666999** PP

                 HHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 166 sdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaa 208
                 +d  +  kp+p+ ++ a+  L  +pe++amV   ++D++a+a+
  CDO70197.1 160 VDLFGTCKPNPKVYQGALHYLELPPEKCAMVAAHMWDLEAAAK 202
                 *****************************************97 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0     2e-11   7.2e-08      61     178 .]      90     210 ..      16     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2e-11
       HAD_2  61 kieellrkyneekkk......kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkke 153
                  ++ l   + ++k +      +     ++v   L  Lk++++ +++ ++++ + + +  ++ ++    d +++ + ++  KP+p+v++ al  l+l +e
  CDO70197.1  90 RWKHLAALWDDNKRHelvlawHRSDGWPDVTRGLYALKKKKMIIAL-SNGNMRFLVDIAKHADL--PWDAVLSVDLFGTCKPNPKVYQGALHYLELPPE 185
                 444455555554444344566667778999*******999999997.77888888888888886..89******************************* PP

       HAD_2 154 eviyvGDsptDieaakkagikviav 178
                 ++ +v  +  D+eaa k g+k+i v
  CDO70197.1 186 KCAMVAAHMWDLEAAAKQGMKTIYV 210
                 **********************976 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.7e-08     6e-05       4      50 ..     167     212 ..     165     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.7e-08
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESS CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVlt 50 
                     KP+p +y  al+ l+++pe++ m+      D+++A + G+k++ V +
      CDO70197.1 167 KPNPKVYQGALHYLELPPEKCAMVAAH-MWDLEAAAKQGMKTIYVPR 212
                     9**************************.89*************9965 PP

>> TFA2_Winged_2  TFA2 Winged helix domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.4e-06     0.023      26      55 ..     114     140 ..     113     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.4e-06
  TFA2_Winged_2  26 dswpdveealeeLeaegeilvlrtkkdgqp 55 
                    d+wpdv   l +L++++ i+ l++   g++
     CDO70197.1 114 DGWPDVTRGLYALKKKKMIIALSN---GNM 140
                    9*********************55...444 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.1e-05      0.26      38      66 ..     131     160 ..     120     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
                 HHHHH-EEEEE.HHHHHHHHT--HHHHHHH CS
      HTH_47  38 wvLnlaDGkrs.LldiAeriglpfdrvaai 66 
                 ++++l+ G++  L+diA++++lp+d+v+++
  CDO70197.1 131 MIIALSNGNMRfLVDIAKHADLPWDAVLSV 160
                 689*****976489***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1689.84
//
Query:       CDO70198.1  [L=541]
Description: hypothetical protein BN946_scf184905.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3690.80
//
Query:       CDO70199.1  [L=984]
Description: hypothetical protein BN946_scf184905.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.4    7.4  16.9         30    5.0  16.9    2.3  1  DUF3446   Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  16.9    0.0017        30      31      83 ..     193     244 ..     184     247 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0017
     DUF3446  31 anppsspsssssssssssssssspsl.scsvaaqqsselehiYs.aaPtYsscsg 83 
                 ++++s++ss  ss+s ssssss+p   s+s+   ++++  ++Y    P+ ss+s+
  CDO70199.1 193 MPSSSPSSSGGSSPSTSSSSSSGPAYvSSSL---HTASGLQLYRlYLPPLSSSSS 244
                 4455556667788888888888888757777...778888888876788877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6546.08
//
Query:       CDO70200.1  [L=475]
Description: hypothetical protein BN946_scf184905.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3445.43
//
Query:       CDO70201.1  [L=553]
Description: hypothetical protein BN946_scf184942.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-09   36.9  45.0    1.5e-07   30.7  23.3    2.5  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7  23.3   8.5e-12   1.5e-07       7     277 ..      72     340 ..      60     355 .. 0.72
   2 !   15.6  10.2   3.2e-07    0.0057      62     144 ..     355     441 ..     343     445 .. 0.85
   3 ?   -3.8   0.4      0.26   4.6e+03      64      80 ..     496     511 ..     485     519 .. 0.45

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.5e-12
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfp 104
                 +++l+  ++++ l  + ++++   +  i+++ ++ ++  a + ++++ ++d  +r   +l+ l+++++g +++++ a+++ +l+++ +l ++g   l  
  CDO70201.1  72 IYSLDGQTTYSYLA-FATSAFD-KHGLISTIQVAQSIIIACGKPVIAKVADVSSRGTSYLVVLVFYVIGyIVIAS-ANGVGALAAGIILYAIG---LQL 164
                 33444444555555.6677777.778899***********************99999************333333.48888************...599 PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawka 202
                 + +++iad+++ + rg++ +l sa f + a +g  ++  ++++  Wr+ + ++ai+   ++  l++ l+++e+++rk    k    g+   p v+ + +
  CDO70201.1 165 LTQIIIADITTLKWRGLVSSLTSAPFIINAFIGSNVSTQVLEHSTWRWGYGMFAILIPASLSpLIVTLFWAENKARKLGLVKAAAPGPDLEPKVQ-IPL 262
                 *************************************************9999999999855666788888888888777777732333333333.333 PP

       MFS_1 203 llkdpvlw.....illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr...lgrrrrl 277
                 +++   +w     + +++l+l +++++++l  l+l  +    +++  +++  + ++++v ++++ ++  ++ +   ++rr+  
  CDO70201.1 263 IRR---IWtvceqLDVVGLALLGTAVALILLPLTLAQNAKNRWDNPSMIA--MIVVGCVLLPAFAMWDIFMAKrpvFPRRFLK 340
                 333...44444553444444443344444444444346666666446666..8888888889899999999663654444444 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.2e-07
       MFS_1  62 rrvlllglllfalglllllfa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggll 144
                  +vl +gl++ ++g + l+++     ss   +++  +lqG+g+g++   +++ + + +p+ + +++++++ + + +G  +g +++g++
  CDO70201.1 355 FWVLTVGLAIRLVG-VGLMIHsrganSSDAEIVWTQLLQGIGGGFASVCSQVGAQASVPHVDVAMVTAVVLLWTEIGGSVGSAVAGAI 441
                 589***********.5555423555555558*******************************************************98 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.26
       MFS_1  64 vlllglllfalglllll 80 
                 +l+++ +l ++  +ll+
  CDO70201.1 496 MLIAATVLAVVP-MLLS 511
                 444444444444.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3892.71
//
Query:       CDO70202.1  [L=277]
Description: hypothetical protein BN946_scf184942.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-22   79.2   0.8    2.5e-22   78.4   0.8    1.4  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
  ------ inclusion threshold ------
      0.054   12.5   0.3      0.068   12.2   0.3    1.1  1  CLPTM1          Cleft lip and palate transmembrane protein 1 


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.8   2.8e-26   2.5e-22       5      89 ..     130     216 ..     126     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 2.8e-26
                     HHHHHHHHHTE...EEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSECSEEEEEEST CS
  Ribosomal_L7Ae   5 evlkkakkagk...lvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrpvsalaikdeg 89 
                     e+  +ak+++k   +++Gl++++ ++e ++a lv++A+dv+p+e + +l+alc++++vpyv+vk+k++LG++v+kk+ +++l+i+d++
      CDO70202.1 130 EKEAQAKDSKKplfVKYGLNHCVALIEAKKASLVVIAHDVDPIELVVFLPALCRKMGVPYVIVKGKARLGTVVHKKT-AAVLTIQDVR 216
                     5555566666665699************************************************************5.6666666654 PP

>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   7.6e-06     0.068     123     175 ..      90     146 ..      41     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.6e-06
      CLPTM1 123 dekydkksvvhktkqLtkylpkkkekktknLlkekeeeeeee....ekeekpvivsy 175
                 ++++dk+++++  k L+ky p++k++k+  L ++ +++ ee+    ++++kp +v+y
  CDO70202.1  90 SHTLDKNTATQLFKLLNKYRPETKQEKKARLEAQAKATAEEKeaqaKDSKKPLFVKY 146
                 778999****************99999999988888877777666444444544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1441  (0.0803726); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2061.75
//
Query:       CDO70203.1  [L=178]
Description: hypothetical protein BN946_scf184942.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1268.14
//
Query:       CDO70204.1  [L=107]
Description: hypothetical protein BN946_scf184942.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 774.30
//
Query:       CDO70205.1  [L=288]
Description: hypothetical protein BN946_scf184942.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0047   17.0   1.8     0.0068   16.5   1.8    1.1  1  DHR10        Designed helical repeat protein 10 domain
  ------ inclusion threshold ------
      0.044   13.9   1.0      0.067   13.3   1.0    1.1  1  ADIP         Afadin- and alpha -actinin-Binding
      0.081   13.4   0.1       0.13   12.7   0.1    1.3  1  DUF4140      N-terminal domain of unknown function (DUF4140)
      0.096   13.3   1.3        0.2   12.3   1.3    1.4  1  Ino80_Iec3   IEC3 subunit of the Ino80 complex, chromatin re-
       0.11   12.4   0.1       0.14   12.1   0.1    1.1  1  Sigma70_ner  Sigma-70, non-essential region
       0.13   12.0   0.1       0.18   11.5   0.1    1.1  1  SHE3         SWI5-dependent HO expression protein 3
       0.23   10.1   0.3        0.3    9.7   0.3    1.0  1  AAA_13       AAA domain


Domain annotation for each model (and alignments):
>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.8   2.7e-06    0.0068      57     100 ..      54      97 ..      47     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-06
       DHR10  57 kklkelrdaleekeielrelerkeerlqrqlenaeeklerlreq 100
                 ++ ++ +++ + ++++   +++++e  +rql++a ekl rl+e+
  CDO70205.1  54 HRGTRYKEKFQALREKYDAVTATHEEYERQLARADEKLKRLQEE 97 
                 56678899999*******************************86 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.0   2.6e-05     0.067      78     122 ..      58     102 ..      54     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
        ADIP  78 rlktqleqlerelalvqakerqlekklktleqklknekeelqrlk 122
                 r k++ ++l+ + ++v+a++ + e++l+++++klk+++ee + l 
  CDO70205.1  58 RYKEKFQALREKYDAVTATHEEYERQLARADEKLKRLQEECNLLL 102
                 7899************************************99875 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     5e-05      0.13      63      98 .]      60     101 ..      39     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5e-05
     DUF4140  63 eee......elkalraeleeledelaaledelaaaearlafl 98 
                 +e+      +++a++a+ ee e++la+++++l++++++ ++l
  CDO70205.1  60 KEKfqalreKYDAVTATHEEYERQLARADEKLKRLQEECNLL 101
                 2223334534999**********************9998775 PP

>> Ino80_Iec3  IEC3 subunit of the Ino80 complex, chromatin re-modelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   7.8e-05       0.2       3      48 ..      59     104 ..      58     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
  Ino80_Iec3   3 fkkKYrKlrvkFeekmkesesLikeeqkiedlskRLaeenDqLLdl 48 
                 +k K++ lr k+++ + + e+  ++  ++++  kRL+ee   LLd 
  CDO70205.1  59 YKEKFQALREKYDAVTATHEEYERQLARADEKLKRLQEECNLLLDA 104
                 89***************************************99995 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.3e-05      0.14      72     111 ..      58      97 ..      27     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.3e-05
  Sigma70_ner  72 ealekfeelreqyeklrkalkkkgrkskkyekareelsee 111
                  + +ekf++lre+y+ +++++++++r+ +++++ ++ l ee
   CDO70205.1  58 RYKEKFQALREKYDAVTATHEEYERQLARADEKLKRLQEE 97 
                  5689***************************999999886 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.1e-05      0.18     100     140 ..      53      93 ..      46     105 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3 100 saseteleeelerlkvqYdalvdsqkeYkehYqqeieeLke 140
                  ++ t+ +e+++ l+ +Yda+ ++++eY  +  +  e+Lk+
  CDO70205.1  53 GHRGTRYKEKFQALREKYDAVTATHEEYERQLARADEKLKR 93 
                 56678899******************998765544444433 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00012       0.3     394     447 ..      46      99 ..      41     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
      AAA_13 394 eakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeik 447
                  +k+++  h+  +++++++++ +ky++++++ e+ e++l+ + ++lk l+ee +
  CDO70205.1  46 GLKVSVSGHRGTRYKEKFQALREKYDAVTATHEEYERQLARADEKLKRLQEECN 99 
                 57888999999***************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      787  (0.0438954); expected 358.6 (0.02)
Passed Vit filter:                       170  (0.00948185); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2005.04
//
Query:       CDO70206.1  [L=211]
Description: hypothetical protein BN946_scf184942.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-16   59.3   0.2    5.5e-16   59.1   0.2    1.2  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   3.1e-20   5.5e-16       9      97 ..      54     152 ..      42     200 .. 0.75

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 3.1e-20
                 BGGS..-EEEEE......S--TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTCEE-B-TTSS.CCCCS---B--STTS..EEEEEE CS
         PBP   9 ents..Pplsws......dvpegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpegavqgknslge.esesgYlgpcPpkgdgkHrYvfl 94 
                 e+t+  P +++       d p+ + sy+l + DpDap+++e +   f Hwv+t+++a + s +  ++++ n+l++   +++Y++p+P +++g HrY+  
  CDO70206.1  54 EDTQdePDIRFAalngpwDQPA-EASYTLAMLDPDAPSRAEpIyrtFRHWVITGLKAPAPSSN--SAEALNALKThPATTPYRPPGPRPNSGLHRYITP 149
                 4777779999998877775565.99************999984678**********6666633..377888888844456****************966 PP

                 EEE CS
         PBP  95 lya 97 
                  + 
  CDO70206.1 150 AFL 152
                 553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1533.84
//
Query:       CDO70207.1  [L=370]
Description: hypothetical protein BN946_scf184942.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00051   20.0   0.1     0.0013   18.7   0.1    1.7  1  APH             Phosphotransferase enzyme family
     0.0015   17.4   0.0     0.0022   16.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.5e-07    0.0013      88     194 ..     184     323 ..     161     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHH.................................H CS
         APH  88 aaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesata.rllaselldlleeleeq.................................v 152
                 ++++++ +e++++ la++  ++  ++ ++ +++   ++ + ++++ a rlla+  ++l+ +l +                                  v
  CDO70207.1 184 DPDAEDRIERVAQILAQVRTAP-YFATPELRSR--FRPCPPVHARSAhRLLAEHDPPLAPRLYACaplvggaimvvmaiapggetawqryglgplpdsV 279
                 56889999**********9995.4445544443..4666666666652444444444444444448899999999**********99999999999998 PP

                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC......TTEEEEE---T CS
         APH 153 laalaallpgelptvllHgDlhpgNllvd....pddgrvtGviDfe 194
                  + +++ l   ++++l+HgD + +N++       + g +  +iDf+
  CDO70207.1 280 VRDIEDALKLLEQEGLVHGDVRRPNVVTVqradGTTGGM--LIDFD 323
                 88888888889***************9888876666666..99998 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-07    0.0022     317     363 ..     284     329 ..     251     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.4e-07
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                     +   +L+++ g++H D+   N++ + ++ +g+  g+LiD+D+   ++
      CDO70207.1 284 EDALKLLEQEGLVHGDVRRPNVVTV-QRADGTTGGMLIDFDWSGRHG 329
                     44456778***************99.88889**********987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2600.01
//
Query:       CDO70208.1  [L=294]
Description: hypothetical protein BN946_scf184942.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2184.10
//
Query:       CDO70209.1  [L=434]
Description: hypothetical protein BN946_scf184942.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3308.95
//
Query:       CDO70210.1  [L=2076]
Description: hypothetical protein BN946_scf184942.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29    9.9   4.3        0.7    8.6   4.3    1.6  1  SAPS       SIT4 phosphatase-associated protein
        2.4    7.6   6.2        9.5    5.6   6.2    2.0  1  TRM13      Methyltransferase TRM13


Domain annotation for each model (and alignments):
>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.3   7.9e-05       0.7     235     304 ..     317     519 ..     294     576 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 7.9e-05
        SAPS 235 mallnekkgeeivkerDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakd.............................. 303
                   l nek+g+  v++ D+v+++ +ee+++ +e+ e +++e++++ ++++++ ++k++  +l +++++k                               
  CDO70210.1 317 AQLSNEKEGNAGVAATDAVKTKTKEEKKTTKEKDEKKNKEKADTMKKKKKKDKEKTKVKDLGSKEKEKTirysgssfeagalsaqgspaplktedgart 415
                 5799********************999655555555554454444444444444433333333333333556677777777777777777777777777 PP

        SAPS 304 ................................................................................................... 303
                                                                                                                    
  CDO70210.1 416 lsrkkqsvlglglpstlrlatvrdvsnsttgsatgvpqapprlsvdsahlilnaqgrpssilssgsslrppstasgistfsgrsprsssssiasvrwde 514
                 777777777777777777777777776666666666666666666666666666666666666666666666666666666666666666666665555 PP

        SAPS 304 ....e 304
                     +
  CDO70210.1 515 vnirT 519
                 54442 PP

>> TRM13  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.2    0.0011       9.5     163     217 ..     306     367 ..     300     385 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0011
       TRM13 163 efqiltkmvSWavsgkrkse............aeeedekeekekeekkeeeeseeekksklsseere 217
                 +++ l +m+SWa  +++k+             +     ++e++k +k+++e++++ek ++++ ++++
  CDO70210.1 306 SMRSLARMASWAQLSNEKEGnagvaatdavktK-----TKEEKKTTKEKDEKKNKEKADTMKKKKKK 367
                 567899******9988866589*9998655441.....33333333333344444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2118  (0.118133); expected 358.6 (0.02)
Passed bias filter:                      836  (0.0466284); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:00.57
# Mc/sec: 11024.84
//
Query:       CDO70211.1  [L=483]
Description: hypothetical protein BN946_scf184942.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-18   66.2   0.0      3e-18   65.8   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
    1.9e-13   50.2   0.1    7.8e-06   25.9   0.0    2.4  2  LysM            LysM domain
  ------ inclusion threshold ------
      0.039   13.3   0.0       0.07   12.5   0.0    1.4  1  Pkinase         Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   5.1e-22     3e-18     277     407 ..     137     283 ..      43     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 5.1e-22
  Pkinase_fungal 277 skrsrlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga 371
                     ++  +le + h r+v+++ G ++++ +s + +++ +rD+I+ +  L+   g++H D+S+ Nil++  ++ ++ +g+ +D ++ ke++ d++++  
      CDO70211.1 137 QHSAQLESKRHDRIVLNEHGHSLHEETSLQTAFSFIRDVIQCLVFLHYCHGWVHCDVSTVNILVV-GESPDQLRGVPADSEYGKEYDADETTH-- 228
                     222337899********************************************************.6778899**************765554.. PP

  Pkinase_fungal 372 rertGTleFmaievlkgeeHsyr......................hDLESffyvllwi 407
                      +rtGT  F aiev     H y                        D ES+ +v + +
      CDO70211.1 229 INRTGTEHFTAIEVDA---HAYNylpmddieqqplspqpfryhplNDWESVWWVCICM 283
                     68***********999...888888999999999999999999999********8865 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.8e-08   0.00011       1      43 [.      31      76 ..      31      77 .. 0.95
   2 !   25.9   0.0   1.3e-09   7.8e-06       2      38 ..      88     126 ..      88     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.8e-08
                EEE-TT--HHHHHHHCTCHHHHHHHHC....TCSSCGG--TTEEEEE CS
        LysM  1 YtVkkGDTLwsIAkrygitveklleaN....nlsspdkifpGqkLki 43
                YtV  GDT+  I+++ +++  +l+  N       +++ + +G  L++
  CDO70211.1 31 YTVVLGDTCDEISAKTNTSTYQLATVNadkiDAACDN-LAVGELLCL 76
                9****************************99999999.****98885 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 1.3e-09
                 EE-TT--HHHHHHHCTCHHHHHHHHC...TCSSCGG--TT CS
        LysM   2 tVkkGDTLwsIAkrygitveklleaN...nlsspdkifpG 38 
                 +V++GD++ +IA+  g+t++ ll+ N   n ++++ i+pG
  CDO70211.1  88 VVQSGDSCAAIADDAGTTLDILLANNpnvNSDCTN-IYPG 126
                 6*****************88888888*66666666.***9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05      0.07      95     133 ..     163     203 ..     140     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
                 --HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE.T CS
     Pkinase  95 lseeeakkiakqilegleylH.skgiiHrDlKpeNiLid.e 133
                  s ++a ++++ +++ l +lH ++g +H+D+ + NiL+  e
  CDO70211.1 163 TSLQTAFSFIRDVIQCLVFLHyCHGWVHCDVSTVNILVVgE 203
                 3445777999***********999*************9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3228.48
//
Query:       CDO70212.1  [L=960]
Description: hypothetical protein BN946_scf184942.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 7080.32
//
Query:       CDO70213.1  [L=894]
Description: hypothetical protein BN946_scf184942.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-14   53.4   0.1    3.9e-14   52.2   0.1    1.7  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   2.2e-18   3.9e-14      18      86 .]     808     876 ..     787     876 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.2e-18
                    ..--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHHH CS
  Dimer_Tnp_hAT  18 sefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqwl 86 
                    +e   l wwk + +++P+l  +ardvL+ip  s   Er Fs + ++l++ r+sl+ ++    + +++wl
     CDO70213.1 808 DERGALAWWKAHANEFPVLATIARDVLAIPGVSIGIERLFSSCRRTLSDARSSLTAESAALTVITKEWL 876
                    467789*************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6350.49
//
Query:       CDO70214.1  [L=704]
Description: hypothetical protein BN946_scf184942.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-81  273.5   0.5    2.9e-81  272.8   0.5    1.3  1  ABC_membrane_2  ABC transporter transmembrane region 2
    5.3e-17   62.6   0.0    1.2e-16   61.5   0.0    1.7  1  ABC_tran        ABC transporter
    9.3e-05   22.4   0.0     0.0004   20.3   0.0    2.0  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
     0.0038   17.8   0.1      0.012   16.1   0.0    1.9  2  AAA_23          AAA domain
  ------ inclusion threshold ------
      0.046   13.6   0.0       0.11   12.5   0.0    1.5  1  Rad17           Rad17 P-loop domain
      0.058   12.8   0.0       0.13   11.6   0.0    1.5  1  SMC_N           RecF/RecN/SMC N terminal domain
      0.081   12.7   0.0       0.19   11.5   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
      0.086   12.3   0.0       0.15   11.5   0.0    1.3  1  AAA_7           P-loop containing dynein motor region
       0.28   10.9   0.0       0.49   10.0   0.0    1.3  1  AAA_15          AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.8   0.5   1.4e-84   2.9e-81       1     269 []      89     364 ..      89     364 .. 0.97

  Alignments for each domain:
  == domain 1  score: 272.8 bits;  conditional E-value: 1.4e-84
  ABC_membrane_2   1 LlkilipklkskeallllvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsllkfallavpasfvnsalkYltqkLalafRkrLtkhlls 95 
                     +l+i+ip+++skealll++++ ll++rt++s++va ldgk+v +lv+ +   F+l+++k++l+avpa+ +ns l+Y+++kLala+R+rLt+ +++
      CDO70214.1  89 ILRIVIPSIRSKEALLLCMHSSLLIFRTVISLYVAALDGKIVASLVRAQLGPFLLNIAKWLLVAVPATWTNSWLSYVQNKLALAYRTRLTQEVMR 183
                     79********************************************************************************************* PP

  ABC_membrane_2  96 eYlkn.......rtyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgllllllyvllatvilriigpplg 183
                     +Yl +       +++Yk++nld+ri+npDq it+D+++F+  l+ ++++++kp+ldvil++++L +++g++gl+ll l v +++++lr+++p +g
      CDO70214.1 184 QYLGDekdpqdlKVFYKLANLDDRIKNPDQMITHDIQRFSTHLAAIYANVAKPVLDVILYNYQLSQNVGAEGLVLLTLLVQASAALLRALTPAFG 278
                     ***65333333247********************************************************************************* PP

  ABC_membrane_2 184 klvaeeeklegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieafvlkYlasilgyvlvalpif 269
                     +++a +++l g++R+ hsrl + +Ee+AF++Gee Ek+ ++r++  ++++  r+l+++++++ +e+ ++k l++ +g+ ++a+p+f
      CDO70214.1 279 QYTALSAQLAGNLRHTHSRLAEFSEEVAFFGGEETEKMLVEREYAGVVKHETRVLRKHWWHSCVEEGIVKWLWGSFGLCICAIPVF 364
                     ************************************************************************************98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   6.1e-20   1.2e-16       2     137 .]     469     611 ..     468     611 .. 0.74

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 6.1e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeie 86 
                 + +s+ +k+g+ + ivG+nG+GKS+L+++l gl     G +           ++   +++  +pq p l  ++ +r++                de++ 
  CDO70214.1 469 RSLSFYVKPGQHLLIVGPNGCGKSSLFRILGGLWPVYGGIV-----------RKPPASQFILIPQRPYLSLGT-LRDQviyphskedmeargITDEDLR 555
                 5799*****************************98888888...........677777777777777777777.7777777777665666664444455 PP

                 HHHHHSTTGGTTCBGESTTS.....GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvkssp.....ssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++l+ ++++++ ++  + ++     + LSgG +q++a ar++  kpk  +lDE+t+
  CDO70214.1 556 AILRVVQMDNIIEREGGWDAarewrEALSGGDQQKIAWARLFYHKPKYAVLDEATS 611
                 55555555553222222111223349****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.96   1.9e+03     171     209 ..     164     202 ..     138     218 .. 0.81
   2 !   20.3   0.0     2e-07    0.0004       3      24 ..     482     503 ..     481     541 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.96
      AAA_21 171 ifadyfgfakekrllqrlvrslklveielsdlgegeeli 209
                 ++++ +  a + rl+q+ +r+++ +e  ++dl+++ +l 
  CDO70214.1 164 YVQNKLALAYRTRLTQEVMRQYLGDEKDPQDLKVFYKLA 202
                 566777788899999********9999999998665444 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 +++GpNg+GKS+L+++l +l+ 
  CDO70214.1 482 LIVGPNGCGKSSLFRILGGLWP 503
                 69***************99964 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.1e-06     0.012      22      39 ..     481     498 ..     448     570 .. 0.90
   2 ?   -2.1   0.2       2.3   4.5e+03     166     195 ..     666     694 ..     640     701 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.1e-06
      AAA_23  22 tlItGpNGaGKTTildAi 39 
                  lI+GpNG+GK+++++ +
  CDO70214.1 481 LLIVGPNGCGKSSLFRIL 498
                 49************9865 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
      AAA_23 166 edekkllekl...eqekekek..eleeleeeleei 195
                 +  + ++ek+   +      k  e  +l+ +l e+
  CDO70214.1 666 KRLALQQEKEaldL------KllEVPKLRARLAEL 694
                 22222222222121......122333333333333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.3e-05      0.11      43      65 ..     476     498 ..     467     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
       Rad17  43 rkkriLLisGPsGCgkstvvkvL 65 
                 ++ + LLi GP GCgks   ++L
  CDO70214.1 476 KPGQHLLIVGPNGCGKSSLFRIL 498
                 56678*************99998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.7e-05      0.13      26      41 ..     480     495 ..     472     498 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 +  ivGpNG+GKs+l+
  CDO70214.1 480 HLLIVGPNGCGKSSLF 495
                 568***********97 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.3e-05      0.19      20      39 ..     476     495 ..     469     496 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.3e-05
      AAA_29  20 dlkgatlltGpsGsGKSTll 39 
                 ++ +  l++Gp+G GKS+l+
  CDO70214.1 476 KPGQHLLIVGPNGCGKSSLF 495
                 555589***********996 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.7e-05      0.15       6      50 ..     451     495 ..     447     499 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-05
       AAA_7   6 eakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtvii 50 
                 e++f+++ + t +   +   l+ ++k ++++l+vGp G+GK+++ 
  CDO70214.1 451 EIQFENVPIVTPNGDILVRSLSFYVKPGQHLLIVGPNGCGKSSLF 495
                 666777777777777777788999******************986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00025      0.49      26      43 ..     481     498 ..     469     501 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
      AAA_15  26 tvliGkNnsGKSsileal 43 
                  +++G+N++GKSs+ ++l
  CDO70214.1 481 LLIVGPNGCGKSSLFRIL 498
                 589**********98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4701.36
//
Query:       CDO70215.1  [L=153]
Description: hypothetical protein BN946_scf184942.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-33  116.3   0.0    1.3e-33  116.1   0.0    1.0  1  PRELI     PRELI-like family
  ------ inclusion threshold ------
      0.046   14.0   0.1       0.15   12.4   0.1    1.9  1  DUF4129   Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> PRELI  PRELI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   1.4e-37   1.3e-33      16     154 ..       3     141 ..       1     144 [. 0.94

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.4e-37
                 BTTEEEEEEEEEEEET.TSEEEEEEEEEEEEESSTTSTTTSSSEEEEEEEEEEEEETTTTEEEEEEEESSSTTTEEEEEEEEEEEETTTT..EEEEEEE CS
       PRELI  16 skhvisvdvlereldd.egklvteRlitlqvrvPrwlkkligvaktvyvleesvvdlkkrtlkletrNltfssllkveErvvYkphpensekTvlkqea 113
                   hv+s+dv++r++d+ +g + teR++ +++++P w+ +l+g+++++yv+e+s+vd++ +t +++++Nl++s+++ ++E ++Y+p+p+    T + q+a
  CDO70215.1   3 VHHVLSIDVVDRSVDPnTGIIRTERILGCKQKAPGWIVRLFGGSEDAYVREVSFVDPATQTATITSVNLSLSQFATCYESIRYTPSPD--GRTTFAQTA 99 
                 58**************8999********************************************************************..889****** PP

                 EEE....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       PRELI 114 kis..vkgslfglsskveklllkkfsenakkgkeglesvlkel 154
                  i+  v +   + ++k+e++l+++f++na+ gk g+  vl++l
  CDO70215.1 100 EIQarV-ALWRSAADKLENWLVQRFEQNAQLGKLGFTDVLRQL 141
                 ***533.4578899**************************996 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.6e-05      0.15      23      60 ..      48      94 ..      41     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
     DUF4129 23 rEyarrv.riapspaa........alaalaelfeearYGgrpasaee 60
                  y+r+v  + p+ ++        +l ++a+++e +rY + p  + +
  CDO70215.1 48 DAYVREVsFVDPATQTatitsvnlSLSQFATCYESIRYTPSPDGRTT 94
                5799999866666444678888889999**********877765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1119.66
//
Query:       CDO70216.1  [L=2167]
Description: hypothetical protein BN946_scf184942.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-09   37.6   0.1    2.2e-06   27.7   0.0    3.8  4  B-block_TFIIIC  B-block binding subunit of TFIIIC
     0.0004   19.9   2.7       0.14   11.8   0.0    5.0  5  HTH_24          Winged helix-turn-helix DNA-binding
    0.00052   20.0   0.0         16    5.7   0.0    5.7  6  HTH_20          Helix-turn-helix domain
     0.0039   17.0   0.1       0.53   10.2   0.0    4.3  5  MarR_2          MarR family
  ------ inclusion threshold ------
      0.025   15.2   0.0         28    5.4   0.0    4.6  5  RPA_C           Replication protein A C terminal
       0.05   13.5   0.0       0.54   10.2   0.0    2.7  2  MarR            MarR family


Domain annotation for each model (and alignments):
>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.4e-10   2.2e-06       5      74 ..     162     225 ..     158     226 .. 0.94
   2 ?    0.9   0.0      0.17   5.1e+02      25      51 ..     317     343 ..     312     349 .. 0.86
   3 ?    3.7   0.0     0.023        69       3      44 ..     364     406 ..     362     407 .. 0.92
   4 ?   -3.7   0.0       4.7   1.4e+04      31      48 ..    2112    2129 ..    2111    2133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.4e-10
  B-block_TFIIIC   5 fklLelIassRysGitqsdLakeskqdprslfyrlksLekkgLIvkqsiidsatkksistsllvlkkyfi 74 
                     +  L++I + R++G+   dL k s+ d +  fy++k L + gL+ k+         +ist+ +v+k ++ 
      CDO70216.1 162 YTGLQIITRGREEGVSVLDLGKKSGYDQKTCFYIIKQLVELGLVLKLRR------PGISTNFCVHKYFYE 225
                     66799******************************************99......89********99985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.17
  B-block_TFIIIC  25 akeskqdprslfyrlksLekkgLIvkq 51 
                     ++ ++ d r +  rl+ L+++g+I+k 
      CDO70216.1 317 VNPTRTDRRFFLTRLRELMEQGFIEKP 343
                     56678999****************995 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.023
  B-block_TFIIIC   3 dqfklLelIassRysGitqsdLakesk.qdprslfyrlksLek 44 
                     +q+++  l+a s+++G+t ++++ +++  d r +  +l+ Lek
      CDO70216.1 364 LQRQIIDLLAESGTKGMTLNEISATLGdFDRRTIDLLLNRLEK 406
                     5889999****************999989*****999999987 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 4.7
  B-block_TFIIIC   31 dprslfyrlksLekkgLI 48  
                      d  ++  ++++L++ g+I
      CDO70216.1 2112 DRQDVLEIVQALQEDGYI 2129
                      667888999*******99 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   4.5e-05      0.14      15      47 ..     173     205 ..     165     205 .. 0.88
   2 ?    1.5   0.0     0.072   2.1e+02      36      48 .]     329     341 ..     327     341 .. 0.90
   3 ?    0.1   0.1      0.21   6.2e+02       5      28 ..     365     390 ..     363     390 .. 0.91
   4 ?   -3.1   0.0       2.1   6.2e+03      30      43 ..    1990    2003 ..    1990    2004 .. 0.91
   5 ?    1.2   0.0     0.093   2.8e+02       7      18 ..    2118    2129 ..    2114    2133 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
      HTH_24  15 nprisqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 + + s  +L +++g  + t+ + +k+L+e Gl+
  CDO70216.1 173 EEGVSVLDLGKKSGYDQKTCFYIIKQLVELGLV 205
                 7899***************************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.072
      HTH_24  36 rrlkrLeeeGlIk 48 
                 +rl++L+e+G+I+
  CDO70216.1 329 TRLRELMEQGFIE 341
                 79*********96 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.21
      HTH_24   5 drkILelLqk..nprisqreLAerlg 28 
                 +r+I+ lL +    +++ +e++  lg
  CDO70216.1 365 QRQIIDLLAEsgTKGMTLNEISATLG 390
                 899*******99999*******9887 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.1
      HTH_24   30 SpstvnrrlkrLee 43  
                  Sp++v+  ++r+++
  CDO70216.1 1990 SPTAVRSVIRRMTD 2003
                  89*********987 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.093
      HTH_24    7 kILelLqknpri 18  
                  +I ++Lq+++ i
  CDO70216.1 2118 EIVQALQEDGYI 2129
                  455555555555 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0052        16      21      60 ..     172     212 ..     160     213 .. 0.88
   2 ?   -2.7   0.0       2.2   6.5e+03      43      55 ..     329     341 ..     327     344 .. 0.88
   3 ?    3.6   0.0     0.024        71      11      48 ..     364     404 ..     360     407 .. 0.79
   4 ?    0.2   0.0      0.27   7.9e+02      35      51 ..     769     785 ..     750     790 .. 0.83
   5 ?   -3.4   0.0       3.7   1.1e+04      29      53 ..     964     991 ..     962     996 .. 0.71
   6 ?    1.3   0.0      0.12   3.5e+02      10      32 ..    1202    1240 ..    1199    1243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0052
                 TCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT.EEEECTE CS
      HTH_20  21 raegltaselaerldlskntlsyHLrvLeeagL.vevvreg 60 
                 r+eg+++ +l +  + +++t+ y +++L+e gL ++++r+g
  CDO70216.1 172 REEGVSVLDLGKKSGYDQKTCFYIIKQLVELGLvLKLRRPG 212
                 799******************************88888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
                 HHHHHHHHCTTEE CS
      HTH_20  43 yHLrvLeeagLve 55 
                  +Lr+L e g++e
  CDO70216.1 329 TRLRELMEQGFIE 341
                 68**********9 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.024
                 HHHHHHHHH..STCTTB-HHHHHHHH.TS-HHHHHHHHHHH CS
      HTH_20  11 vRrrilraL..araegltaselaerl.dlskntlsyHLrvL 48 
                  +r i ++L  ++ +g+t++e+ ++l d ++ t++  L+ L
  CDO70216.1 364 LQRQIIDLLaeSGTKGMTLNEISATLgDFDRRTIDLLLNRL 404
                 68999****999**************656666665555555 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.27
                 TS-HHHHHHHHHHHHHC CS
      HTH_20  35 dlskntlsyHLrvLeea 51 
                 +++++t s ++++L+ea
  CDO70216.1 769 RGRQATTSANVEKLQEA 785
                 589*************9 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.7
                 HHHHHH...TS-HHHHHHHHHHHHHCTT CS
      HTH_20  29 elaerl...dlskntlsyHLrvLeeagL 53 
                 e+a +    +++k tl   L +Le+ g 
  CDO70216.1 964 EIASTRpgaRIDKRTLETTLSTLESKGK 991
                 5555554447999999999999998775 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.12
                  HHHHHHHHHH................STCTTB-HHHHHH CS
      HTH_20   10 PvRrrilraL................araegltaselae 32  
                  ++R+ril++L                +++ ++t+++l+e
  CDO70216.1 1202 KSRARILSLLdmlrtldlatplvptdSPNPAVTCAPLHE 1240
                  789*******99999999999999999999999999986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00018      0.53      15      53 ..     171     207 ..     156     219 .. 0.86
   2 ?   -2.7   0.0       1.9   5.8e+03      41      53 ..     330     342 ..     329     345 .. 0.88
   3 ?   -1.3   0.0      0.68     2e+03       7      32 ..     365     390 ..     363     407 .. 0.70
   4 ?   -2.6   0.0       1.8   5.4e+03      35      53 ..     772     790 ..     771     795 .. 0.79
   5 ?   -0.2   0.0      0.32   9.7e+02      33      52 ..    2111    2130 ..    2108    2143 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
                 HCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  15 grrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53 
                 gr++g  ++v +l ++ g+++ +  +i+k Lv+ GLv +
  CDO70216.1 171 GREEG--VSVLDLGKKSGYDQKTCFYIIKQLVELGLVLK 207
                 45666..9*****************************54 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
                 HHHHHHHTTSEEE CS
      MarR_2  41 ilkrLvaaGLver 53 
                 +l++L ++G++e+
  CDO70216.1 330 RLRELMEQGFIEK 342
                 799********96 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.68
                 HHHHHHHHHCTTTSEEEHHHHHHHHT CS
      MarR_2   7 qarvLaaLgrrpgrdltvgelarrlg 32 
                 q++++  L+ ++ + +t +e+ ++lg
  CDO70216.1 365 QRQIIDLLAESGTKGMTLNEISATLG 390
                 5666667777776669*****99886 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHTTSEEE CS
      MarR_2  35 ksavsrilkrLvaaGLver 53 
                 ++++s  +++L++a  v+ 
  CDO70216.1 772 QATTSANVEKLQEAPVVVP 790
                 6899********9966665 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.32
                  SSHHHHHHHHHHHHHTTSEE CS
      MarR_2   33 lsksavsrilkrLvaaGLve 52  
                  ++++ v  i++ L++ G++ 
  CDO70216.1 2111 YDRQDVLEIVQALQEDGYIC 2130
                  58999999**********95 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   4.4e+02      47      97 ..     157     205 ..     137     207 .. 0.84
   2 ?    5.4   0.0    0.0094        28      46      92 ..     360     405 ..     342     407 .. 0.83
   3 ?   -2.8   0.0       3.4     1e+04      72      96 ..    1741    1766 ..    1729    1767 .. 0.89
   4 ?    0.7   0.0      0.27   8.1e+02      50      92 ..    1961    2002 ..    1945    2004 .. 0.85
   5 ?   -0.9   0.0      0.87   2.6e+03      79      97 ..    2111    2129 ..    2099    2130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                 SXHHHHHHHHHHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTSE CS
       RPA_C  47 ltalaqqvlnlikqspeseeGvhvdeiaqklrlsvndvkqavdeLsneGii 97 
                 lt++  + l++i++   +eeGv+v  + +k + + ++   ++++L++ G++
  CDO70216.1 157 LTPMIYTGLQIITR--GREEGVSVLDLGKKSGYDQKTCFYIIKQLVELGLV 205
                 56666666788888..99*****************************9986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0094
                 XSXHHHHHHHHHHHH.SXSTTTEEHHHHHHHS.TSXHHHHHHHHHHHH CS
       RPA_C  46 gltalaqqvlnlikqspeseeGvhvdeiaqkl.rlsvndvkqavdeLs 92 
                 +   l++q+++l+ +   +++G+ ++ei++ l  ++ +++   ++ L+
  CDO70216.1 360 SNVSLQRQIIDLLAE--SGTKGMTLNEISATLgDFDRRTIDLLLNRLE 405
                 566799*********..9**************9999999987777765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.4
                  HHHHHS.TSXHHHHHHHHHHHHHTTS CS
       RPA_C   72 eiaqkl.rlsvndvkqavdeLsneGi 96  
                  +ia+ l ++ ++ v+ a+ eL+n G+
  CDO70216.1 1741 FIAELLkGVGEEPVRIATTELLNRGV 1766
                  688888899999************97 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.27
                  HHHHHHHHHHH.SXSTTTEEHHHHHHHS.TSXHHHHHHHHHHHH CS
       RPA_C   50 laqqvlnlikqspeseeGvhvdeiaqkl.rlsvndvkqavdeLs 92  
                  +a+ vl l++   ++++G++ + + + l  +s   v+++++ + 
  CDO70216.1 1961 VAENVLALLRH--AGPAGLSKQRLQADLePFSPTAVRSVIRRMT 2002
                  56778888888..9**************99********998765 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.87
                  SXHHHHHHHHHHHHHTTSE CS
       RPA_C   79 lsvndvkqavdeLsneGii 97  
                   + +dv ++v+ L+++G+i
  CDO70216.1 2111 YDRQDVLEIVQALQEDGYI 2129
                  5789*************98 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018      0.54      16      53 ..     174     211 ..     164     212 .. 0.91
   2 ?   -1.1   0.0      0.63   1.9e+03      38      51 ..     331     344 ..     329     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
                 TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET CS
        MarR  16 gplsvseLakklgvskstvtrvldrLekkGlieRsksp 53 
                 ++ sv +L+kk+g ++ t   ++++L++ Gl+ + + p
  CDO70216.1 174 EGVSVLDLGKKSGYDQKTCFYIIKQLVELGLVLKLRRP 211
                 667888**************************999988 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.63
                 HHHHHHTTSEEEEE CS
        MarR  38 ldrLekkGlieRsk 51 
                 l++L ++G+ie+ +
  CDO70216.1 331 LRELMEQGFIEKPP 344
                 899*******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.47
# Mc/sec: 13960.75
//
Query:       CDO70217.1  [L=715]
Description: hypothetical protein BN946_scf184942.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0042   16.9   6.2     0.0068   16.2   6.2    1.3  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
     0.0087   16.1   1.4      0.017   15.2   1.4    1.4  1  ORC_WH_C        Origin recognition complex winged helix C-ter
     0.0088   15.7   1.9        0.1   12.2   2.4    2.2  2  FAM176          FAM176 family
  ------ inclusion threshold ------
      0.013   15.1   8.1      0.019   14.6   8.1    1.1  1  PPP4R2          PPP4R2
      0.014   14.7   7.6      0.021   14.1   7.6    1.2  1  NOA36           NOA36 protein
      0.014   15.3   0.6      0.022   14.7   0.6    1.2  1  MAM33           Mitochondrial glycoprotein
      0.027   14.8   2.0      0.045   14.0   2.0    1.2  1  Na_trans_assoc  Sodium ion transport-associated
      0.058   12.8   6.4      0.081   12.3   6.4    1.1  1  CDC27           DNA polymerase subunit Cdc27
      0.062   13.3   2.9       0.11   12.6   2.9    1.3  1  RXT2_N          RXT2-like, N-terminal
      0.084   12.8   7.9       0.13   12.2   7.9    1.1  1  Myc_N           Myc amino-terminal region
       0.17   12.6   7.7       0.31   11.7   7.7    1.5  1  CNDH2_M         PF16858
       0.18   12.2   9.4       0.37   11.2   9.4    1.4  1  ANAPC15         Anaphase-promoting complex subunit 15
       0.19   11.7   6.3       0.27   11.2   6.3    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit
       0.34    9.1   4.6       0.48    8.6   4.6    1.2  1  Nop14           Nop14-like family
        2.3    8.4   4.0        5.7    7.1   4.0    1.7  1  Imm5            Immunity protein Imm5
          3    8.1   9.2        7.1    6.9   9.2    1.5  1  DUF4611         Domain of unknown function (DUF4611)
        3.4    6.4   4.7        4.7    5.9   4.7    1.1  1  Nucleo_P87      Nucleopolyhedrovirus capsid protein P87
        6.8    4.7  14.4         11    4.0  14.4    1.2  1  DNA_pol_phi     DNA polymerase phi


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   6.2   6.8e-06    0.0068     115     149 ..     245     279 ..     163     307 .. 0.46

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.8e-06
                 ----------------------------------- CS
  Cwf_Cwc_15 115 dedseeeeeeeeeesdddsdsdsdddddedetaeL 149
                 + + +++ e++++++dd++d+d+d+dd++++++ L
  CDO70217.1 245 SPTASAQVEHKDDSDDDEDDDDEDEDDEDEDEEDL 279
                 22222222233344444444444444444444444 PP

>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.4   1.7e-05     0.017      81     118 ..     196     289 ..     171     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
    ORC_WH_C  81 k........................................................eeeaekkkkkkekeedeedeeewekelqarFiralhe 118
                 +                                                        e+++ ++++++ ++ede+de+e e++l++rF+ a++e
  CDO70217.1 196 HsfststartagtssrsgttvtltqsashvvasstltkdatvtvtvrvasptasaqvEHKDDSDDDEDDDDEDEDDEDEDEEDLHVRFFEAVQE 289
                 34444444455555555666666666677777777777777788888888888887788888889999999999999***************99 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   2.4    0.0001       0.1      57      86 ..     250     279 ..     191     309 .. 0.59
   2 ?    0.2   0.0      0.55   5.4e+02      25      72 ..     579     626 ..     575     643 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
      FAM176  57 kkkklkeesekasededeeeeeeeedsses 86 
                 ++ ++k++s+++++d+de+e++e+ed+++ 
  CDO70217.1 250 AQVEHKDDSDDDEDDDDEDEDDEDEDEEDL 279
                 222222222222222222222222222222 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.55
      FAM176  25 lFvlgvcvGLlltLcllviriscrkdlerlkkkkkklkeesekasede 72 
                 +F l      ll ++ l++ i cr ++ +  ++  + +ee ++++ ++
  CDO70217.1 579 FFSLMTTAAVLLIVITLILGIICRINFGKGLTRYLNAQEELADDDYQS 626
                 555566666788888999999999888754443333333333322222 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   8.1   1.9e-05     0.019     161     275 ..     141     277 ..     108     283 .. 0.49

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
      PPP4R2 161 elnse......keedkansssqedsedvslvsipwvdekteselspfikeidsimsvnlgfedeeekeedd..........neseesaseseeiteekd 243
                  l+s        +++ ++s s ++s+ +  +si+ + +++ s+ ++++   ds    ++++  ++   ++           +     +    + t++kd
  CDO70217.1 141 LLPSSssvsalTTANPSFSGSAGSSSPAIITSIKATLSSAASQAKATSSVSDSS-AHSFSTSTARTAGTSSrsgttvtltqS----ASHVVASSTLTKD 234
                 333334555556666677777778888888888888888877777777766654.233333333333332234556543321....2223333333444 PP

      PPP4R2 244 esvkvee............kdddeeddeedtdyveeeeddesed 275
                  +v+v+             ++dd++dde+d+d +e++ed e+e+
  CDO70217.1 235 ATVTVTVrvasptasaqveHKDDSDDDEDDDDEDEDDED-EDEE 277
                 444444366655544333212222222222222222221.2221 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   7.6   2.1e-05     0.021     265     298 ..     248     277 ..     185     283 .. 0.47

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
       NOA36 265 sgddeddegdedddddddeedddeeeddedeeee 298
                 ++++ +++ d+ddd+ddd+e    +eddede+ee
  CDO70217.1 248 ASAQVEHKDDSDDDEDDDDE----DEDDEDEDEE 277
                 11222222222222222222....2222222222 PP

>> MAM33  Mitochondrial glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.6   2.2e-05     0.022      45     101 ..     228     282 ..     194     331 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
       MAM33  45 trkf.gdekIrvtfsvadlaneeeeeeeeeeeeedeaeeeeeeeeeeeeeeeesfpvr 101
                 + +  +d +++vt++va+ +++++ e+++++++++++ +e+e++e   +e+ee++ vr
  CDO70217.1 228 SSTLtKDATVTVTVRVASPTASAQVEHKDDSDDDEDDDDEDEDDE---DEDEEDLHVR 282
                 45554899********88888666666554444444433333333...3333444444 PP

>> Na_trans_assoc  Sodium ion transport-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.0   4.5e-05     0.045      50     127 ..     180     278 ..     166     322 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-05
  Na_trans_assoc  50 kalkakkenqianqtsaet.eelekake.............ekseededdeldfiknpnltvsVpIA........egesdlen.eededessess 121
                      a +ak+++ ++++ + +  +++ +                ++s+ ++  ++  +k+  +tv+V +A        e+ +d ++ e+d+de+++ +
      CDO70217.1 180 AASQAKATSSVSDSSAHSFsTSTAR--TagtssrsgttvtlTQSASHVVASSTLTKDATVTVTVRVAsptasaqvEHKDDSDDdEDDDDEDEDDE 272
                     4456677777777733333222222..123444333333322222244445559999**********8888887733344443033333333333 PP

  Na_trans_assoc 122 eeekkk 127
                     +e++++
      CDO70217.1 273 DEDEED 278
                     333322 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.4   8.2e-05     0.081     153     267 ..     162     278 ..     125     301 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.2e-05
       CDC27 153 ngkkpkaakekaaketssakseskkksaekskdaskettkekaekaasskaaslkkkasaksnimksffkakpae..kkkkteakeqkveee.seeeke 248
                  g  ++a +++ +++ ssa s++k++s+ +  +a   +t  + ++ +ss    + + ++++s +++s   +k a         ++ ++++ e +++ + 
  CDO70217.1 162 AGSSSPAIITSIKATLSSAASQAKATSSVSDSSAHSFSTSTARTAGTSSRSGTTVTLTQSASHVVASSTLTKDATvtVTVRVASPTASAQVEhKDDSDD 260
                 222344455555555555555555555444444444444444444555555555555555555555443333322002222222222222221333333 PP

       CDC27 249 kedkeleddsaaeeeeeee 267
                 +ed++ ed+++ e+e+ee+
  CDO70217.1 261 DEDDDDEDEDD-EDEDEED 278
                 33333222222.2222222 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.9   0.00011      0.11      54      85 ..     238     277 ..     197     295 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      RXT2_N  54 k.........kekekeekeeeeedeegdeededdddeeeae 85 
                 +          + + e+k+++++de++d+ededd+de ++e
  CDO70217.1 238 TvtvrvasptASAQVEHKDDSDDDEDDDDEDEDDEDE-DEE 277
                 2445555554223333333333333333333333322.111 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.9   0.00013      0.13     145     263 ..     174     288 ..     129     309 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
       Myc_N 145 assasrersgsaaaarlsaallqdlktsasecvdpsvvfpfplnkkekakkaaaesaalaldppasssssasaassssssdskalssseedvlsesdee 243
                 +++ s++ s+++a++++s +  ++++ts++++  +s  +   ++ +++a++++a s++l++d++++++++ ++ ++s++ ++  +  +++d ++++de+
  CDO70217.1 174 KATLSSAASQAKATSSVSDSSAHSFSTSTARTAGTSSRSGTTVTLTQSASHVVA-SSTLTKDATVTVTVRVASPTASAQVEH--KD-DSDDDEDDDDED 268
                 233333444444444555555666666666666666666666666666644443.555555555554444444444444444..33.234444455555 PP

       Myc_N 244 eeeeeeeeeeidVVtvekrr 263
                 e++e+e+ee++ V   e  +
  CDO70217.1 269 EDDEDEDEEDLHVRFFEAVQ 288
                 56666788888887666655 PP

>> CNDH2_M  PF16858
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.7   0.00032      0.31      65     140 .]     183     273 ..     166     278 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00032
     CNDH2_M  65 askgssqksksrskafsspngrsggtgkksepeksq.gn..................eddlsePedddiPdnnlpesddadsgagdldddsDDed 140
                 + k +s+ s s +++fs+ ++r +gt  +s   +    +                         +++  + ++++++dd d+  +d d+d+DDed
  CDO70217.1 183 QAKATSSVSDSSAHSFSTSTARTAGTSSRSGTTVTLtQSashvvasstltkdatvtvT----VRVASPTASAQVEHKDDSDDDEDDDDEDEDDED 273
                 4566777777779*************99999888875557788888888764422222....234444447777888888876666667777776 PP

>> ANAPC15  Anaphase-promoting complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.4   0.00037      0.37      45      89 ..     232     277 ..     219     279 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
     ANAPC15  45 ekdnnlvpiGKpase....eeeeeeeedeeeenddsddseesdedddem 89 
                 +kd  +++  + as     + e+++++d+   ++d+dd++e+ded+de+
  CDO70217.1 232 TKDATVTVTVRVASPtasaQVEHKDDSDD---DEDDDDEDEDDEDEDEE 277
                 67777888888888754434444555444...44444444455555544 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.3   0.00027      0.27     256     345 ..     169     278 ..     116     292 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
       TFIIA 256 v...legelsaeeeagaqkeelsreeidri.re.................ealkakelekeskkkkraeessla......................dls 311
                 +   +++ ls+ +++++ ++++s++ ++++  +                  ++                    a                      + +
  CDO70217.1 169 IitsIKATLSSAASQAKATSSVSDSSAHSFsTStartagtssrsgttvtlTQS--------------------AshvvasstltkdatvtvtvrvaSPT 247
                 24455666666666666666666666666622233333332222222222111....................12233444444444445555555888 PP

       TFIIA 312 eilqlDGagddsdeeeeeeesdedsdsessdded 345
                   +q+  ++d++d+e+ ++e ++d+d   +d+ed
  CDO70217.1 248 ASAQVEHKDDSDDDEDDDDEDEDDED---EDEED 278
                 99999999998888443333322222...23333 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.6   0.00048      0.48     369     395 ..     253     278 ..     164     308 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00048
       Nop14 369 eeeeeeedeeeeedeeeeeeeeededd 395
                 e +++++d++e++d+e+e++e+ede+d
  CDO70217.1 253 E-HKDDSDDDEDDDDEDEDDEDEDEED 278
                 1.2222222222222222223233322 PP

>> Imm5  Immunity protein Imm5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.0    0.0057       5.7      83     151 ..     218     286 ..     174     289 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0057
        Imm5  83 adklsndlen.dsgeeaeetvalaglaAlkvivtliysietdaesileeddyldedd..fDpeswdadflas 151
                   +  ++++  ++ +++ + ++++ + A  +++  + + ++d ++  e+dd +dedd   D e++   f+ +
  CDO70217.1 218 LTQSASHVVAsSTLTKDATVTVTV-RVASPTASAQV-EHKDDSDDD-EDDDDEDEDDedEDEEDLHVRFFEA 286
                 455566666545566666666666.44444443333.333333333.3444444444358999999888765 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.2    0.0071       7.1      51      77 ..     251     277 ..     238     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0071
     DUF4611  51 eqeaqddvaaagdeeeegededdeeee 77 
                 + e +dd ++++d+++e+ed++de+ee
  CDO70217.1 251 QVEHKDDSDDDEDDDDEDEDDEDEDEE 277
                 446777777777777777777777765 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.7    0.0047       4.7     298     433 ..     145     276 ..     129     293 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0047
  Nucleo_P87 298 qslqspaqtpaperslqsPeqtparrkstkmteeslqsPaqtpawqtpattptretssdteaiksepektleeklreklpsdlsaqssvpdkkseasav 396
                 +s  s+  t +p  s    ++ pa  +s+k t +s  s a++    +  ++ +  ts+ + a +s  + t  +    +  s++ a s++ +    + +v
  CDO70217.1 145 SSSVSALTTANPSFSGSAGSSSPAIITSIKATLSSAASQAKATSSVSDSSAHSFSTSTARTAGTSSRSGTTVT--LTQSASHVVASSTLTKDATVTVTV 241
                 4555555555566666666666666666666666555544333322222222222222222222222222222..222223333333333333333333 PP

  Nucleo_P87 397 lptekrkRrrarklqelssdededssdekevDkeker 433
                   ++    +++++++  +sd+ded++de+e D++++ 
  CDO70217.1 242 RVASPTASAQVEHKD--DSDDDEDDDDEDEDDEDEDE 276
                 333333334444444..44444444555554444432 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  14.4     0.011        11     658     694 ..     254     288 ..     244     299 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
  DNA_pol_phi 658 ededseedddeeesdedeededdedvdeid...elrekla 694
                        +dd+++++d+d+ededded+de+d   ++ e+++
   CDO70217.1 254 H-----KDDSDDDEDDDDEDEDDEDEDEEDlhvRFFEAVQ 288
                  2.....3333333333333333333333333335555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1667  (0.0929779); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 4509.71
//
Query:       CDO70218.1  [L=240]
Description: hypothetical protein BN946_scf184942.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-34  118.3   0.0    3.4e-34  118.0   0.0    1.1  1  PRELI     PRELI-like family


Domain annotation for each model (and alignments):
>> PRELI  PRELI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   1.9e-38   3.4e-34       3     154 ..      17     165 ..      15     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 1.9e-38
                 HHHHHHT--SBTTBTTEEEEEEEEEEEETTSEEEEEEEEEEEEESSTTSTT.TSSSEEEEEEEEEEEEETTTTEEEEEEEESSSTTTEEEEEEEEEEEE CS
       PRELI   3 VtaaflrryPnpiskhvisvdvlerelddegklvteRlitlqvrvPrwlkk.ligvaktvyvleesvvdlkkrtlkletrNltfssllkveErvvYkph 100
                 V+ a+l ryPnp+s+h++s+dv++r +++ g+l t+Rli +++++Prw+ k +i  a+ ++vlees vd+  + +  +t+Nl+++++++veE++  ++ 
  CDO70218.1  17 VSLAYLLRYPNPYSTHILSCDVISRDITPAGTLRTTRLILKTGSLPRWAPKgMISRAE-SWVLEESEVDPLGKVMRCTTKNLDHVKVMRVEEHIHIRQ- 113
                 7889*********************************************998999555.**********************************97654. PP

                 TTTT..EEEEEEEEEE..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       PRELI 101 pensekTvlkqeakisvkgslfglsskveklllkkfsenakkgkeglesvlkel 154
                  +n  +T+ ++ea + + g+  gl +++e+++l+kf+ n+++++eg++ +l+ +
  CDO70218.1 114 MDN-GQTMQTTEAMFLS-GFGWGLTKRIENYGLAKFKANLQRSREGFFIILDLI 165
                 444.66*********65.888****************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1591.91
//
Query:       CDO70219.1  [L=255]
Description: hypothetical protein BN946_scf184942.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1694.73
//
Query:       CDO70220.1  [L=445]
Description: hypothetical protein BN946_scf184942.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-12   45.6   0.0     0.0022   17.6   0.0    3.4  3  Lactamase_B_2  Beta-lactamase superfamily domain
    0.00016   21.7   0.1    0.00049   20.2   0.0    1.8  2  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.4e-07    0.0022       3      43 ..      88     124 ..      86     132 .. 0.79
   2 !   17.5   0.0   2.5e-07    0.0023      54     115 ..     198     265 ..     190     276 .. 0.90
   3 !    6.5   0.0   0.00061       5.5     120     154 ..     342     377 ..     300     413 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-07
                    EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHH CS
  Lactamase_B_2   3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDH 43 
                    i+iD g ++ qqa+  + P   +  l++idaVl+thaH+D 
     CDO70220.1  88 IVIDVGKSF-QQAAVEWFP---KYGLRQIDAVLITHAHADG 124
                    899999997.453545455...45899*************5 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.5e-07
                    --EEEEEEEEHHHHHHCCTTCGHHHCHTT.......TTEEEEEE-TTSEEEECSTTEEEEEEEE-EE-- CS
  Lactamase_B_2  54 rpkklplyapkgvlavleanfvylaleee.......pavnvheldwgesfelgdggleitatparhksg 115
                    +p ++++y+++++ +++e+ f+yl+ ++        p+ ++h ++  ++fe+gd+g+ i ++ + h+  
     CDO70220.1 198 QP-HIDVYVSDETFEEVERAFPYLVNKKFasgggdvPEFKWHRIEDRKPFEIGDTGIIIDPFKVVHGRT 265
                    44.499*****************99887799**********************************9875 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.00061
                    E-TTTSEEEEEECTTEEEEEESS-S---....HHHHHHH CS
  Lactamase_B_2 120 rnagdtlGlriegggkrvyyigDtgyip....eeigerl 154
                    +++  ++G+ ++   ++v yi Dt +ip    ++i +r+
     CDO70220.1 342 PKPYFCFGFTVQ---NAVTYISDTSHIPedvwDHILARY 377
                    556678999999...89***********44444444444 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.5e-08   0.00049      16      56 ..      86     123 ..      71     123 .. 0.91
   2 ?   -2.5   0.1      0.48   4.3e+03      97     137 ..     243     291 ..     213     297 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.5e-08
                  CEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHH CS
  Lactamase_B  16 gviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlD 56 
                   +i+iD G s ++a   +     +++++++dav++TH+H+D
   CDO70220.1  86 ATIVIDVGKSFQQAAVEW---FPKYGLRQIDAVLITHAHAD 123
                  689************998...*******************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.48
                  H........TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEE CS
  Lactamase_B  97 l........lagvsadkpdvdeeeldgnaggrralyvtggpghghghgv 137
                  +        +++ +++k+++ +   ++  +      v +  +h +++gv
   CDO70220.1 243 RkpfeigdtGIIIDPFKVVHGRTFAEEKFFVQSPNSVSPASTHPPTPGV 291
                  3444444555555555555555555555555555555566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2938.78
//
Query:       CDO70221.1  [L=358]
Description: hypothetical protein BN946_scf184942.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-33  115.0   0.2    2.4e-33  114.3   0.2    1.3  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    0.00015   21.8   0.2      0.012   15.7   0.2    2.4  2  TGS           TGS domain


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.2   2.7e-37   2.4e-33       6     106 .]     181     292 ..     178     292 .. 0.91

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 2.7e-37
  MMR_HSR1_Xtn   6 itstvkltkldeetvkkilk......eykihnaevliredvt.....vDdlidviegnrvYipclyvlNKiDlisleeldelarepnsvviSaekel 91 
                   i++tv+ltk+de+t+++il+       +k+hn++v+ired +     +D++idv+ g r+Yipclyv+NKiD+isle +d+lare+++vviS+e +l
    CDO70221.1 181 INKTVPLTKTDEKTIRTILAgcerryTHKLHNCDVMIREDHSgrkitTDEFIDVLIGTRKYIPCLYVYNKIDAISLERMDQLAREDHTVVISCELGL 277
                   6799***************7554434579*********986666666************************************************** PP

  MMR_HSR1_Xtn  92 nldeLkekiweeLnL 106
                   nld+L e+iweeL+L
    CDO70221.1 278 NLDYLIERIWEELDL 292
                   *************97 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00022         2       1      20 [.     293     319 ..     293     320 .. 0.96
   2 !   15.7   0.2   1.3e-06     0.012      35      56 ..     314     344 ..     314     345 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00022
                 EEEEE.TTSSEEE......EETTB-HH CS
         TGS   1 irvyt.PdGkvpd......lprgatve 20 
                 ++vyt ++G  pd      l++gatve
  CDO70221.1 293 VKVYTkKRGAHPDladpicLRKGATVE 319
                 79***********************97 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.3e-06
                 EEEEECS.........EEEETTSBB-SSEEE CS
         TGS  35 iyAlVnG.........qrvgldhvLedgdvv 56 
                 ++A V G         q+vgl+h+++d+dvv
  CDO70221.1 314 KGATVEGksskfnphaQKVGLNHHVMDEDVV 344
                 699***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2484.13
//
Query:       CDO70222.1  [L=1484]
Description: hypothetical protein BN946_scf184942.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-63  213.9   0.0    4.3e-63  213.2   0.0    1.4  1  Pkinase      Protein kinase domain
      4e-34  118.1   0.0    1.8e-24   86.4   0.0    2.2  2  Pkinase_Tyr  Protein tyrosine kinase
     0.0077   15.6   0.1       0.12   11.6   0.0    2.2  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.2   0.0   7.1e-67   4.3e-63       2     264 .]    1077    1367 ..    1076    1367 .. 0.92

  Alignments for each domain:
  == domain 1  score: 213.2 bits;  conditional E-value: 7.1e-67
                  EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase    2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgsls 96  
                  ++ + +G GsfG+Vy a++ +++  +AvK+ik +++   ++  ++++ E+++++ l+hpn+v++y++  + d++y++ ey++gg+la+lle+ ++ +
  CDO70222.1 1077 QQRRFIGAGSFGSVYLAINLDSNTLMAVKEIKFQETAGLTNlySHIRDELNVMEMLHHPNVVEYYGIEVHRDKVYIFEEYCQGGSLAQLLEHGRIED 1173
                  56789******************************99999999***********************************************9777788 PP

                  HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGG..EEEETTTEEEE-SGTTSEESSSSCS..............................BCTTTSCG CS
     Pkinase   97 eeeakkiakqilegleylHskgiiHrDlKpeN..iLidekgelKitDFGlakelesssk..............................ltsfvgts 161 
                  e+ ++ ++ q+legl+ylHs+g++HrD+Kp+   iL+d+ g++K +DFG ak + ++++                               +s +gt+
  CDO70222.1 1174 ENILQVYTLQMLEGLAYLHSQGVVHRDIKPDSgyILLDHMGVIKFVDFGAAKIIAKNHRtlqrtrrvpentappsapgtssgqfgstglNNSLTGTP 1270
                  88999*************************8555*********************99999************************************* PP

                  GGS-HHHHTTSCB..SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase  162 eYlAPEvlkeney..skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRlt 254 
                   Y++PEv+++n+     ++D+WslG++++e  tg+ p+s   + ++ ++++ +      i g  +++  lpe+ ++s+  +d+++++l+ dp++R+t
  CDO70222.1 1271 MYMSPEVIRNNKRgrHGAMDIWSLGCVVLECATGHKPWS---NLDNEWAIMFH------I-GvaTQHPPLPEPGQLSDLGIDFIRQCLTIDPMQRPT 1357
                  ********77766336789********************...33323333333......1.22356889**************************** PP

                  HHHHHTSGGG CS
     Pkinase  255 aeellqhpyl 264 
                  a el++hp++
  CDO70222.1 1358 AVELMDHPWM 1367
                  *********7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0     3e-28   1.8e-24       4     165 ..    1079    1238 ..    1076    1249 .. 0.82
   2 !   29.3   0.0   8.4e-11     5e-07     169     256 ..    1270    1362 ..    1260    1364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 3e-28
                   EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSH..HH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr    4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeate..ee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96  
                    + +G+G+fG+V+ +       ++++  avK +k + t+  ++  +++ +e+++m+ l+hpn+v+++g+ +++++++i  ey++gG+L + L++  
   CDO70222.1 1079 RRFIGAGSFGSVYLAINL----DSNTLMAVKEIKFQETAglTNlYSHIRDELNVMEMLHHPNVVEYYGIEVHRDKVYIFEEYCQGGSLAQLLEHG- 1169
                   5779***********999....7889999999965444411443677888******************************************987. PP

                   TTTSBHHHHHH.HHHHHHHHHHHHHHTTEEEST-SGGG..EEEEETTEEEE-STTTHEETTTSSEEEETTSS CS
  Pkinase_Tyr   97 kekltlkdlls.falqvAkGmeyLeskklvHrdlaarN..vLlsenkvvkisDfGLardiekddeyvkkeea 165 
                     +++ +++l+ ++lq+ +G++yL+s+ +vHrd+      +Ll++  v+k  DfG a+ i k++++ ++ ++
   CDO70222.1 1170 --RIEDENILQvYTLQMLEGLAYLHSQGVVHRDIKPDSgyILLDHMGVIKFVDFGAAKIIAKNHRTLQR-TR 1238
                   ..6666665552789*******************865333******************99665555443.34 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 8.4e-11
                   GGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH.HHHHH...HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr  169 vkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypglknee.vlekl...kegkrlekpekcpeelyelmkkcweedpeeRptfselv 256 
                     +m+pE+++++k     + D+Ws G ++ E +t g++p+++l+ne  ++ ++   +++  l++p + ++   +++++c++ dp +Rpt  el+
   CDO70222.1 1270 PMYMSPEVIRNNKrgRHGAMDIWSLGCVVLECAT-GHKPWSNLDNEWaIMFHIgvaTQHPPLPEPGQLSDLGIDFIRQCLTIDPMQRPTAVELM 1362
                   569********997677889************99.********877624444443356666999999999999****************99886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0     2e-05      0.12     147     192 ..    1178    1225 ..    1162    1265 .. 0.76
   2 ?    1.2   0.0      0.03   1.8e+02     230     263 ..    1288    1321 ..    1274    1333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
  Kinase-like  147 lllTlqlirlaanLqakglvhgkftvdn..llldekgglmlggftaLv 192 
                   ++ Tlq++   a+L+++g+vh ++++d+  +lld+ g ++  +f+a  
   CDO70222.1 1178 QVYTLQMLEGLAYLHSQGVVHRDIKPDSgyILLDHMGVIKFVDFGAAK 1225
                   45699*********************9866899********9998754 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.03
  Kinase-like  230 kldaWqlGlviyriwclklPltlateeakeewkf 263 
                   ++d W lG v++  +  + P  +  +e  + ++ 
   CDO70222.1 1288 AMDIWSLGCVVLECATGHKPWSNLDNEWAIMFHI 1321
                   69**********9999998887777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.49
# Mc/sec: 9194.70
//
Query:       CDO70223.1  [L=834]
Description: hypothetical protein BN946_scf184942.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-97  324.6   0.2    3.1e-97  324.1   0.2    1.3  1  MCM              MCM P-loop domain
    6.7e-35  119.7   0.0    1.1e-34  119.0   0.0    1.3  1  MCM_OB           MCM OB domain
      6e-22   77.9   0.3    1.2e-21   76.9   0.3    1.5  1  MCM_lid          MCM AAA-lid domain
    3.2e-15   56.6   0.7    1.2e-14   54.8   0.2    2.2  2  MCM_N            MCM N-terminal domain
    9.6e-08   31.7   0.0    1.3e-06   28.0   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.002   18.0   0.0     0.0079   16.1   0.0    2.0  2  AAA_3            ATPase family associated with various cellul
     0.0066   16.2   0.1      0.028   14.1   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.1   0.2  1.2e-100   3.1e-97       2     224 .]     288     510 ..     287     510 .. 0.99

  Alignments for each domain:
  == domain 1  score: 324.1 bits;  conditional E-value: 1.2e-100
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +++i++lak+++i++ l++s+apsi+gh+++k+aill+l+gg +k+l+++t++rgdin+l+vgdp+taKsq+L++v ++ap a+ t+g+gss++gLtaa
  CDO70223.1 288 IRMINQLAKRSNIFHLLSQSLAPSIFGHDKIKEAILLLLLGGAEKNLPNGTHIRGDINILMVGDPSTAKSQMLRFVLSTAPLAIATTGRGSSGVGLTAA 386
                 6789*********************************************************************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+ d++tge  leaGa+vlad+Gv+ciDefdkm++ dr+a+hE+mEqqt++iaKaGi++tLnar+sv+aAanp++g+yd +k  ++ni l+++lLsrFD
  CDO70223.1 387 VTSDKDTGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHTTLNARCSVIAAANPIYGQYDVHKDPHKNIALPDSLLSRFD 485
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 l+fv+ D+vde++D+++a+h++++h
  CDO70223.1 486 LLFVVTDDVDENRDRAIADHVLRMH 510
                 **********************998 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   4.3e-38   1.1e-34       3     124 ..     118     249 ..     114     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 4.3e-38
                 GG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---.........-SB-..TTT-HHH.-EEE-GGGSEEEEEEEEEEE-------- CS
      MCM_OB   3 RdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee.........PrkCeekeCeskd.pfkletekskfvdfqklklQEspeevpa 91 
                 R+lr++h+gk++++eGivtr+s v+pk+ k+v++c+++g  +  e+++         P++  +++ + ++ p+++e   s+f+d q++++QE+pe++pa
  CDO70223.1 118 RHLRATHLGKMISLEGIVTRCSLVRPKMMKSVHYCPDTGMFHAREYRDattstsnlpPTSSVTPQTDDEGhPLQMEYGYSEFRDNQRISIQEMPERAPA 216
                 9**************************************866666666777888998887767777644458888888********************* PP

                 -----EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  92 GelPrslevileddlvdkvkPGdrvevtGiyra 124
                 G+lPrs++vile+dlvdk+kPGdr++++G+yr+
  CDO70223.1 217 GQLPRSTDVILEGDLVDKCKPGDRIQLVGVYRS 249
                 *******************************97 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.3   4.6e-25   1.2e-21       2      84 ..     584     668 ..     583     671 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 4.6e-25
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH..TSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkee..edskrksipitvRqLesliRLseAlAklrlsevvteedveeairllk 84 
                 +++kYi+ya++k  P+l++ a+++++++Y+ lR+e+   ++k+++ p t+R+Le+liRL++A+Ak rls  v+++d++ a ++l+
  CDO70223.1 584 FVKKYIQYAKSKPPPVLTKGAADHIVNVYATLRNEDldGTRKKRTSPLTARTLETLIRLATAHAKARLSPKVQRQDAKVAEEILR 668
                 689********************************976334799************************************99986 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.2   4.6e-18   1.2e-14       2     103 ..      19     107 ..      18     108 .. 0.91
   2 ?   -2.1   0.0       2.3   5.9e+03      19      38 ..     783     802 ..     769     803 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 4.6e-18
       MCM_N   2 ekFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykddakefpaeltrrfqv 100
                 + Fe+FL+          + + Yrd + +m+++++++L +++ddL+++ +++a+ +l++p +ylp+le+al +vv++++++ k++      ++ + ++v
  CDO70223.1  19 RVFEEFLDAE-------TELYNYRDDIGRMLRQDERRLIINIDDLRDYRRDFADGLLKQPVDYLPALEDALAKVVERVHDQDKHE------IEGKAYRV 104
                 5699999966.......5679********************************************************99987665......88888888 PP

       MCM_N 101 rfk 103
                  f 
  CDO70223.1 105 GFS 107
                 886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
       MCM_N  19 dgekkYrdqlqemaerektt 38 
                 d++  Y+  l em++++ +t
  CDO70223.1 783 DEDQMYLHTLLEMINEGLQT 802
                 67889999999999998765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   2.6e+02      21      41 ..     342     362 ..     337     372 .. 0.82
   2 !   28.0   0.0   4.9e-10   1.3e-06      93     161 ..     394     462 ..     388     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakr 41 
                   G  n+l+vG p + K+ + + 
    CDO70223.1 342 GDINILMVGDPSTAKSQMLRF 362
                   888************977654 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 4.9e-10
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpc 161
                   g ++ + G++ la +Gv+ +DE+ +++     ++ e +e+++vti++a  +++  ar+ ++aa+Np   
    CDO70223.1 394 GERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHTTLNARCSVIAAANPIYG 462
                   5668899********************99999**********************************754 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.1e+03      62      79 ..     258     275 ..     254     304 .. 0.82
   2 !   16.1   0.0   3.1e-06    0.0079      47     114 ..     389     461 ..     346     485 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
       AAA_3  62 fanllladeinrappktq 79 
                 f++l+la++in  ++k+ 
  CDO70223.1 258 FKSLILANNINLLSSKIG 275
                 8999*******8888865 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.1e-06
       AAA_3  47 feekekefefkkGpvf.an..llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPie 114
                  ++++ e ++++G+++ a+  ++  de ++ +   + a+ e+me+++vt++++   ++l+    v+a+ nPi 
  CDO70223.1 389 SDKDTGERRLEAGAMVlADrgVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAgiHTTLNARCSVIAAANPIY 461
                 566667778888876523244999*************************9875226789************94 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05     0.028      79     142 ..     393     458 ..     390     466 .. 0.90
   2 ?   -2.3   0.0       1.3   3.2e+03      48      75 ..     783     810 ..     771     813 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                      TTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  79 tGAekekkGlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatn 142
                      tG ++ ++G++  ad G++ +De  +++    + + +v+++++v   + G +++ ++ + +iaa+n
       CDO70223.1 393 TGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVtiAKAGIHTTLNARCSVIAAAN 458
                      67778889*******************************9997522699***************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                      TTTS-EEEEETTTS-TTCHHHHHHEBSS CS
  Sigma54_activat  48 rkekpfvavncaaipeelleseLFGhek 75 
                       +++ +++     i+e l + eLFG+++
       CDO70223.1 783 DEDQMYLHTLLEMINEGLQTNELFGTAE 810
                      55566666666778999999****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 5205.39
//
Query:       CDO70224.1  [L=150]
Description: hypothetical protein BN946_scf184942.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1074.52
//
Query:       CDO70225.1  [L=685]
Description: hypothetical protein BN946_scf184942.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-30  102.7  13.6    1.3e-07   32.1   0.1    6.9  7  WD40         WD domain, G-beta repeat
      3e-08   33.9   0.1        1.8    8.9   0.0    4.4  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0071   15.9   0.1       0.39   10.3   0.0    2.7  3  PQQ_2        PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.8   7.4e-10   4.4e-06       2      38 .]     285     323 ..     284     323 .. 0.87
   2 !   32.1   0.1   2.2e-11   1.3e-07       1      38 []     328     366 ..     328     366 .. 0.97
   3 ?    2.4   0.0     0.054   3.2e+02      13      38 .]     381     410 ..     370     410 .. 0.63
   4 !   16.3   0.0   2.3e-06     0.014       2      38 .]     415     452 ..     414     452 .. 0.87
   5 ?   -1.2   0.0      0.75   4.5e+03      16      37 ..     473     494 ..     467     495 .. 0.80
   6 !   14.8   0.1   6.7e-06      0.04       7      37 ..     507     540 ..     502     541 .. 0.73
   7 !   12.2   0.5   4.5e-05      0.27       5      37 ..     549     583 ..     545     584 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 7.4e-10
                 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                  c++t+tGH ++v+ ++ f+  g++l+sGs+D ++++Wd
  CDO70225.1 285 VCVHTWTGHtGGVSVVRlFPNTGHLLLSGSMDTKIKLWD 323
                 59*******8778444479999999*************9 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 2.2e-11
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+clrt+ GH + v ++ fs dg+ ++s+++D+  ++Wd
  CDO70225.1 328 GNCLRTFHGHmKAVKDVTFSNDGRKFLSCGYDRQMKLWD 366
                 79***************************99*******9 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.054
                 E.EEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40  13 v.tslafspdgaw...lasGsdDgtvriWd 38 
                 + + ++f+pd +    +++G+ D+++  +d
  CDO70225.1 381 IpYVVRFHPDEDKqhiFLAGMSDKKIIQYD 410
                 4455667888888877568*6699998776 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 2.3e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +++++ H ++v+ + f ++++ +++ sdD+t+r Wd
  CDO70225.1 415 EITQEYDQHlGPVNTITFVDENRRFVTTSDDKTIRAWD 452
                 5678999***9*****98888888888999*******9 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.75
                 EEEETTSSEEEEEETTSEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriW 37 
                 +  +p+++++a+ s D+ + ++
  CDO70225.1 473 VTLHPSKKYFAAQSLDNQILVY 494
                 55699****9854889999887 PP

  == domain 6  score: 14.8 bits;  conditional E-value: 6.7e-06
                 EESSSSEEEEE....EETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGHssvtsla....fspdgawlasGsdDgtvriW 37 
                 + GH sv + a    fspdg+w++sG+  g+  +W
  CDO70225.1 507 FAGH-SVAGYAcqvgFSPDGKWISSGDGEGNMVFW 540
                 6799.7743334478********998558887777 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 4.5e-05
                 EEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   5 rtltGHss.vtslafspdgaw.lasGsdDgtvriW 37 
                  ++++Hs  v +  + p+ +  +++Gs+Dg +++W
  CDO70225.1 549 SKFRAHSKvVIAHEWLPHETSkVVTGSWDGLIKLW 583
                 568999554567766666666778*********** PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0024        14      46      75 ..     303     333 ..     286     339 .. 0.76
   2 !    8.4   0.0   0.00043       2.6      38      79 ..     338     379 ..     333     389 .. 0.88
   3 !    5.2   0.0    0.0043        25      49      89 ..     393     432 ..     383     435 .. 0.84
   4 !    8.9   0.0    0.0003       1.8      38      89 ..     513     563 ..     473     566 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaes.gkvvhs 75 
                  + + g+lL  +  d++++l d+++ g+++++
   CDO70225.1 303 FPNTGHLLLSGSMDTKIKLWDVYThGNCLRT 333
                  6688******************973555555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00043
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                   + v+++ +++dg+ +     d +++l d e+g++++ +s +
   CDO70225.1 338 MKAVKDVTFSNDGRKFLSCGYDRQMKLWDTETGQCLQRFSNG 379
                  5789*********99999999***************999876 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0043
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + +++  ++sd ++  +d++sg++ ++++ +    v+++++
   CDO70225.1 393 KQHIFLAGMSDKKIIQYDINSGEITQEYDQHLGP-VNTITF 432
                  4689999*********************999874.777766 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0003
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                   +   ++ ++pdgk +  +  +g++ + + ++g++ ++++++s+  v   +W
   CDO70225.1 513 AGYACQVGFSPDGKWISSGDGEGNMVFWEWKTGRIKSKFRAHSKV-VIAHEW 563
                  44455889**********************************994.666566 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.001       6.1      35      99 ..     349     417 ..     316     426 .. 0.81
   2 !   10.3   0.0   6.5e-05      0.39      35      90 ..     392     450 ..     359     455 .. 0.78
   3 ?    1.8   0.1     0.024   1.5e+02      34      71 ..     523     560 ..     509     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.001
       PQQ_2  35 sggtlfvatgggrlvaldaatGkvlWettl...egpvvgaplvaegrvvvva.sdgqlialdaedGkrl 99 
                 +g+++++ ++ +++  +d++tG+ l +++    +  v+  p  + ++++++  sd+ +i++d+++G+  
  CDO70225.1 349 DGRKFLSCGYDRQMKLWDTETGQCLQRFSNgkiPYVVRFHPDEDKQHIFLAGmSDKKIIQYDINSGEIT 417
                 67788888999************9988875545666677799******99988999**********976 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.5e-05
       PQQ_2  35 sggtlfva.tgggrlvaldaatGkvlWettl.egpvvgaplvaegrvvvvasdg.qlia 90 
                 +++++f a     +++++d ++G+++ e++   gpv ++ +v+e+r +v +sd+ +++a
  CDO70225.1 392 DKQHIFLAgMSDKKIIQYDINSGEITQEYDQhLGPVNTITFVDENRRFVTTSDDkTIRA 450
                 66777777357789***************9999******************98856665 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.024
       PQQ_2  34 lsggtlfvatgggrlvaldaatGkvlWettlegpvvga 71 
                 ++g+++ +++g+g++v ++ +tG+++ ++++ ++vv a
  CDO70225.1 523 PDGKWISSGDGEGNMVFWEWKTGRIKSKFRAHSKVVIA 560
                 578899999*****************999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4614.54
//
Query:       CDO70226.1  [L=308]
Description: hypothetical protein BN946_scf184942.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   60.3   0.0      8e-07   28.9   0.0    2.5  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.2e-11   9.4e-07       4      93 ..      77     213 ..      74     215 .. 0.85
   2 !   28.9   0.0   4.5e-11     8e-07      10      65 ..     229     285 ..     224     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.2e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........................CCCSSTTTSCSS.........................HHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqt........................qkksskksksaa.........................ildvlk 53 
                 s++kella++l   ++  +++P +v Kt lq+                        + +s+ +    +                         ++ ++k
  CDO70226.1  77 SLAKELLASLLLQYATNALVQPWEVGKTLLQVqwvpretgdvvhdaaedvddeaelSDSSNDD----SyfadppcwkkarrpdyvipvgsadgTWGMMK 171
                 67899***************************9999999999999999988776663333333....13444788888888889999999999999999 PP

                 HHH..HHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  54 kiy..keeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 k+   + eG ++l++Gll + +++a +sal+ ++y  l+ ++
  CDO70226.1 172 KVAsfRGEGWLALWKGLLTTAVQNALSSALQPLIYSLLQSIF 213
                 998778*****************************9998877 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 4.5e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHH.HHGGG CS
   Mito_carr  10 laGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeG.lrgly 65 
                 l  +++ ++++++  Pld+v+trl +q++  +++++++ ld+l++i+ +eG lrg y
  CDO70226.1 229 LLPVASQVLTGFLLSPLDLVRTRLIVQSSVPRHRTYSGPLDALRQILAHEGgLRGAY 285
                 55678999***************************************8665156655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2045.94
//
Query:       CDO70227.1  [L=650]
Description: hypothetical protein BN946_scf184942.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-88  297.5   0.0    6.6e-88  295.8   0.0    1.7  2  RINT1_TIP1  RINT-1 / TIP-1 family
  ------ inclusion threshold ------
      0.048   13.4   6.7       0.29   10.8   0.6    2.5  2  DUF745      Protein of unknown function (DUF745)
      0.076   13.2   6.5        1.7    8.8   0.4    3.3  3  SesA        N-terminal domain on NACHT_NTPase and P-loop NTPa
       0.19   12.0   5.8        7.2    6.8   0.1    4.0  4  DUF5304     Family of unknown function (DUF5304)


Domain annotation for each model (and alignments):
>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.17   7.6e+02     325     387 ..      62     132 ..      26     157 .. 0.54
   2 !  295.8   0.0   1.5e-91   6.6e-88       2     333 ..     278     647 ..     277     649 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.17
  RINT1_TIP1 325 aeelivealkkeikealkaYvnksqWsslsssses......slsvsselvell....n..llkrlldfLekalsk 387
                 + ++ ++a   +++++  +Y+++ q +sl  +s +      s     elv+ l    +  +l ++l+ L+++l +
  CDO70227.1  62 SSQSSLDATIADTRAKAAEYLHTAQELSLVRHSLAdelsylS----DELVSSLgepdSkpTLLEDLEALHRTLKE 132
                 444555666666777777777776666665554334533342....23322221111112344444444444433 PP

  == domain 2  score: 295.8 bits;  conditional E-value: 1.5e-91
  RINT1_TIP1   2 plevlvkplekrFrYHFsgdkqTnklskpewflefilklleknldflrenvqpilakkfrekidavsefitaLlplvreKvasvleevlsdpalLshli 100
                 p++ lv+p+ +rF+YHF+g++qTn+l+kpew+++++ +   ++++f++++vq +l  ++ ++id+  ef+  +lpl++ K++++++ +l +p +L+h i
  CDO70227.1 278 PIQALVQPIALRFKYHFEGTRQTNRLDKPEWYFTHVVNESHEHRPFMESIVQSLLLPTEYKTIDPWREFTLQMLPLLERKLRRTIPALLAHPPILAHTI 376
                 99************************************************************************************************* PP

  RINT1_TIP1 101 sellsfdkeLre.kykYd.........a...eekwkgLtselLdqekvfekWlevEkefalerfeeIisskdaweidyDsvesk........ktkptks 178
                  + l+fd++Lr+  ++ +         +   e+kw g++  +L ++++fe W+e E++fa++++ eIis++daw i+ + ++++        +++pt+s
  CDO70227.1 377 YQALAFDTALRDeGFDLPgttvaakaaEgggEAKWAGISEVILGKKEWFEAWVEGERKFAMDQYLEIISAPDAWLIADEDADADedvrsverDFRPTNS 475
                 ***********956999999999887615679*******98999******************************9655555555699************ PP

  RINT1_TIP1 179 avrvvdLLesiteryeplssfsyklkflsdIqlelldqYherLkssleayesltstvgrtlqge........tkeqqaelegvkglerlckiygsakyl 269
                 a rv+ L e++t+ry pl+++s++ +fl+ +ql ll++Yh r++ssl+a+e+l s++ r+++g+          ++     gv+g++rlck + s+ky+
  CDO70227.1 476 ARRVKALVEQVTDRYSPLPQYSQRTRFLIVVQLPLLESYHARISSSLDAFETLSSSLMRAVPGAlgagggkgG-DSHRLTAGVEGVQRLCKALVSSKYV 573
                 ***************************************************************9999998632.22334579***************** PP

  RINT1_TIP1 270 enaledwsdevfFieLweelqerakknee.....stavgse..........eegalFdetiaaydrlrkraeeliveal 333
                 +na+e w++++fF+eLw e+ +ra+ +++     s                 eg++F+e+++ yd l++raee+iv+ l
  CDO70227.1 574 ANAMETWGEDLFFLELWAEISRRATLRTKaesvaS-----LpnprapedepPEGTIFEELVRHYDALVDRAEEMIVHLL 647
                 ********************999888888544431.....344466667799************************976 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.8    0.0037        16     139     169 ..      44      74 ..      35      89 .. 0.70
   2 ?   10.8   0.6   6.5e-05      0.29      65     129 ..     127     191 ..     115     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0037
      DUF745 139 qlleaAkkRveeLkkqlkearkdlektkkaA 169
                 ql+++A++ ++ L  +l++ ++ l++t + +
  CDO70227.1  44 QLVQQARNHLQALDAKLASSQSSLDATIADT 74 
                 7888888888888888888888887774332 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.5e-05
      DUF745  65 eqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaag 129
                 +++ +el+  +a vq ++++l+ sea+++ ++++ +    q+e l++++++++++ +++e+va++
  CDO70227.1 127 HRTLKELESVKAYVQVIEHALKLSEAAVEDVRSSTTVRVPQYEKLQEFVASVSAACTKVEAVASQ 191
                 4455778888899*************************************************987 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.4   0.00039       1.7       4      62 ..      22      85 ..      20     116 .. 0.79
   2 ?    5.5   0.7    0.0042        19      11      79 ..     123     188 ..     114     193 .. 0.62
   3 ?   -1.4   0.0      0.55   2.5e+03      87     118 ..     458     489 ..     452     493 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00039
        SesA  4 tiaiveaaiklydaikdikglpeaFrevgkrLplvqetLedaksqlesskldedtesa.....i 62
                 +a +++++k +d ++   +l +  +++ ++L+ + + L + +s+l++  +d+ +++a     +
  CDO70227.1 22 ALAYLNSTYKSVDDLERGPDLDQLVQQARNHLQALDAKLASSQSSLDATIADTRAKAAeylhtA 85
                678899**********************************************999987654443 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0042
        SesA  11 aiklydaikdikglpeaFrevgkrLplvqetLedaksqlesskldedtesa....ikpvlesckekatkleei 79 
                 +       + +++  ++++ v++ +++++++L+  + ++e+ +++++ +      +++ ++s++++ tk+e++
  CDO70227.1 123 L-------EALHRTLKELESVKAYVQVIEHALKLSEAAVEDVRSSTTVRVPqyekLQEFVASVSAACTKVEAV 188
                 3.......44444555666666666666666666666666666665544334444899999999988888876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.55
        SesA  87 padsrleryrkavrslgkgskVEtLmkgiled 118
                 +ad+ ++++ + +r ++ +++V +L++++ ++
  CDO70227.1 458 DADEDVRSVERDFRPTNSARRVKALVEQVTDR 489
                 45556677777788889999999999988765 PP

>> DUF5304  Family of unknown function (DUF5304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.17   7.6e+02      25      59 ..      78     112 ..      57     119 .. 0.74
   2 ?   -0.8   0.0      0.37   1.7e+03      44      81 ..     121     158 ..     114     187 .. 0.79
   3 ?    6.8   0.1    0.0016       7.2       2      49 ..     447     493 ..     446     501 .. 0.90
   4 ?    4.0   0.0     0.012        55      20      53 ..     613     646 ..     597     650 .] 0.80

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.17
     DUF5304  25 gaepGsaaeelrklvdavadklsglqspllgavas 59 
                 +ae   +a el  +  ++ad+ls l  +l++++ +
  CDO70227.1  78 AAEYLHTAQELSLVRHSLADELSYLSDELVSSLGE 112
                 34455689999999999999999999999887655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.37
     DUF5304  44 dklsglqspllgavaspaaqqvvrqvveqakaavepvi 81 
                 + l  l+  l +  + +a  qv++++++ + aave v 
  CDO70227.1 121 EDLEALHRTLKELESVKAYVQVIEHALKLSEAAVEDVR 158
                 56666777777777777888888888888899998885 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0016
     DUF5304   2 adaWakacaeDlaaekaRrraeegaepGsaaeelrklvdavadklsgl 49 
                 +daW  a  eD +a+ + r+ e+  +p ++a  ++ lv+ v+d+ s l
  CDO70227.1 447 PDAWLIA-DEDADADEDVRSVERDFRPTNSARRVKALVEQVTDRYSPL 493
                 6999876.8999999999999**********************99876 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.012
     DUF5304  20 rraeegaepGsaaeelrklvdavadklsglqspl 53 
                 r  e ++++G+  eel +  da++d+  ++  +l
  CDO70227.1 613 RAPEDEPPEGTIFEELVRHYDALVDRAEEMIVHL 646
                 556788999*****************98886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.55
# Mc/sec: 3577.38
//
Query:       CDO70228.1  [L=271]
Description: hypothetical protein BN946_scf184942.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-05   25.4   2.3    0.00094   19.1   0.0    3.5  4  NT5C             5' nucleotidase, deoxy (Pyrimidine), cytosol
    8.8e-05   22.7   0.0    0.00024   21.3   0.0    1.8  2  HAD_2            Haloacid dehalogenase-like hydrolase
    0.00037   20.3   0.0    0.00049   19.9   0.0    1.3  1  NIF              NLI interacting factor-like phosphatase
     0.0023   18.3   0.0     0.0052   17.1   0.0    1.7  1  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0039   16.8   0.0     0.0067   16.0   0.0    1.5  1  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph
     0.0075   16.4   0.0      0.015   15.4   0.0    1.7  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.029   14.8   0.0    1.4  1  HAD              haloacid dehalogenase-like hydrolase
      0.088   12.5   0.0       0.19   11.5   0.0    1.4  1  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> NT5C  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2      0.04        89       1      15 [.      53      67 ..      53      72 .. 0.88
   2 !   19.1   0.0   4.2e-07   0.00094      51     120 ..      82     148 ..      66     158 .. 0.79
   3 ?    0.4   0.0      0.23   5.1e+02     126     143 ..     173     190 ..     157     219 .. 0.78
   4 ?   -1.3   0.2      0.74   1.7e+03     161     174 ..     249     262 ..     246     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.04
        NT5C  1 rsivlvDlDgvladl 15
                r+++ vD+D+vl+++
  CDO70228.1 53 RPVIAVDMDDVLSQT 67
                789********9876 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.2e-07
        NT5C  51 eslyrfltepglFadlepipgarevLeeladeg.rlvvitaallqfydavkekveWldehlplipyrnlvl 120
                 e++ +f  + ++     p+pga + L +l + g rlvv+ta+       ++  ++Wl++ +p+i    ++ 
  CDO70228.1  82 EKVEQF-WKTDYIDKAPPVPGALDALTKLKNMGyRLVVVTARQPR---ELDRSLAWLERNFPGIFETMICT 148
                 444444.4667888889****************9******98766...899*************8877765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
        NT5C 126 lvrgDvlidDapknlekl 143
                  +++ +l+dD+++n  k 
  CDO70228.1 173 KLKAKFLVDDSAENAVKC 190
                 57899********97765 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.74
        NT5C 161 elRaasWqevedli 174
                   R+++W+ev + +
  CDO70228.1 249 LTRVKDWEEVMQWV 262
                 57999999999877 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00024      48     128 ..      63     148 ..      44     185 .. 0.73
   2 ?   -2.5   0.1       2.1   4.6e+03      69      93 ..     236     264 ..     206     268 .. 0.49

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
       HAD_2  48 llrklgeseeeee....kieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleql..giesyFdvivts 128
                 +l++ +e +   +    ++e++ + +++   + +  p++g+ ++L +Lk++gy+l +vT ++ ++++++l+ l  ++  +F++++++
  CDO70228.1  63 VLSQTNEVNPYWGnpdeTVEKVEQFWKTDYID-KAPPVPGALDALTKLKNMGYRLVVVTARQPRELDRSLAWLerNFPGIFETMICT 148
                 55554444333332222444444444444444.999********************************9987622455777777665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
       HAD_2  69 yneekkk....kevkpydgvkelLeeLke 93 
                 ++eek +     +++ +++ +e+++++++
  CDO70228.1 236 WKEEKLElpegAQLTRVKDWEEVMQWVEK 264
                 33333333333444444445555544444 PP

>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.2e-07   0.00049       5     119 ..      58     189 ..      54     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.2e-07
         NIF   5 LDLDetLvhskleksk.........klkve...gekvevsvlkRpgldefLkelskl.yevvifTasseeyaeavidildpekkl.lshrlyrescv.. 87 
                 +D+D++L  +++ ++          k+  e   ++++       pg+ + L++l ++ y +v+ Ta +++  ++ + +l+++    ++ +++  +++  
  CDO70228.1  58 VDMDDVLSQTNEVNPYwgnpdetveKV--EqfwKTDYIDKAPPVPGALDALTKLKNMgYRLVVVTARQPRELDRSLAWLERNFPGiFETMICTGQSMet 154
                 677777776664222134554433222..22224443333333489999999999999*********************88876548888776666544 PP

         NIF  88 .kkkgeyvKdLsll..grdlsrvvivDdspdsfel 119
                  +++ e v++Ls+    r+l+   +vDds++++ +
  CDO70228.1 155 lTDEHELVTKLSKAdvCRKLKAKFLVDDSAENAVK 189
                 34466********76699************99876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0052     111     156 ..      90     135 ..      45     188 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
                 HHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 111 ftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                     d+ ++ p+a +a+ +Lk +g+++v++t  +p+  +r +  l 
  CDO70228.1  90 TDYIDKAPPVPGALDALTKLKNMGYRLVVVTARQPRELDRSLAWLE 135
                 44456777***************************99986555444 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     3e-06    0.0067      69     153 ..      49     134 ..      32     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3e-06
                      HTTSEEEEEE--BTTTEEHHHHHHHCHHHTCHH-T..THHHHHHHTTGGCCECCHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHHH CS
  Acid_phosphat_B  69 kadkkdavvfDiDeTvLsnspYqkyqglgkkkfdp..ekfdewvnkgeakaipgalelikkvverGvkiffvsgRseeqkaaTvenL 153
                      +    +++ +D D+ vLs+++  +  + + +++ +  e+f++     +a+++pgal+ + k+++ G+ ++ v+ R+  + +  ++ L
       CDO70228.1  49 HDSDRPVIAVDMDD-VLSQTNEVNPYWGNPDETVEkvEQFWKTDYIDKAPPVPGALDALTKLKNMGYRLVVVTARQPRELDRSLAWL 134
                      44567899999999.777766666666555555443588**999999*****************************99877766655 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.5e-06     0.015      11      76 ..      94     158 ..      56     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.5e-06
                  ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHH CS
  Hydrolase_6  11 rgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkk 76 
                  ++  ++pga +al+ l+++g+++v++T +  +  +  ++ le+ +++   e ++++++++  +  +
   CDO70228.1  94 DKAPPVPGALDALTKLKNMGYRLVVVTARQPRELDRSLAWLER-NFPGIFETMICTGQSMETLTDE 158
                  67779**********************9888887776666655.4454457788888888877776 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.3e-05     0.029      63     149 ..      74     166 ..      57     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
         HAD  63 aglseelaaelerfvaevirpkl.ldpgalellaahraaGdrvvvvSgg....lrplvepllaelg..adevlatelevdd...rltgelglegkpv 149
                  g ++e  + +e+f  + +  k+   pgal++l + +  G+r+vvv++     l++ +  l +++   +++ ++t     +    lt e++l  k++
  CDO70228.1  74 WGNPDETVEKVEQFWKTDYIDKApPVPGALDALTKLKNMGYRLVVVTARqpreLDRSLAWLERNFPgiFETMICTG----QsmeTLTDEHELVTKLS 166
                 556666777777777444444422228**********************877767777777754445888888882....12235666655544444 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.4e-05      0.19      20      55 ..     102     137 ..      94     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.4e-05
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgld 55 
                  + +a+ klk+ g+ +v+ T+R++r++ + l  l+ +
   CDO70228.1 102 ALDALTKLKNMGYRLVVVTARQPRELDRSLAWLERN 137
                  679**********************99998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1722.28
//
Query:       CDO70229.1  [L=597]
Description: hypothetical protein BN946_scf184942.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-56  191.4   0.0    4.5e-40  137.8   0.0    2.5  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   2.5e-44   4.5e-40       3     339 ..      41     400 ..      40     422 .. 0.79
   2 !   50.8   0.0     6e-18   1.1e-13     354     423 ..     447     523 ..     430     529 .. 0.89

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 2.5e-44
                 SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEE.ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHH CS
        p450   3 gptplplvgnllqlgrkeelhevlrklqkkygpifrlk.lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRr 100
                 +p+   ++gn+++l  +++ ++  ++l+++yg +  l+ l + + vv ++p+a ++v+ik++ +++       +a++ +  +g g+l + ge+++k+R+
  CDO70229.1  41 PPSESFVFGNIPNLM-SRHCFKLREELARQYGRVILLHgLLGAKWVVTYDPKALHAVFIKEQ-DIYE----EPVASL-RLLLGPGLLGTLGEQHRKQRK 132
                 5557889*******9.5899999*********9987764789*******************5.4444....455553.379****************** PP

                 HHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.......EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHH.CHHHH CS
        p450 101 fltptltsfgkl.sleelveeeaedlveklrkkagess.......elditellskaaldvigsilFgarfdlledeklselvkaveelsslls.kssvq 190
                 +l+p + ++  l  +++l+ +++++  +++ +++ + +       eld+  ++ + +l+v+g+  +g +fd l ++ + ++ +a+++ +  ++ + + +
  CDO70229.1 133 MLNPVFSTK-HLrDMTPLFYDIVHKTRDAIMTRVRAGAqekdsgvELDMLSWMGRTTLEVLGQAGLGYSFDPLVKDVPDDFATAIKDFFPQMArSIVLR 230
                 ********9.5556666655555555555444444443344599*********************************8888888888887443033333 PP

                 CCCC..........CH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.......SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHH CS
        p450 191 llll..........fp.llkylptkllrklkeavkklkdlldklieerretldsa.......kksrrdfldalllak.kekkgesklsdeelaatvlel 270
                 lll+           + +++++p  + +++k++ ++l+     +++e++  l +          + rd +++ll a   +++++ kl d+el  ++ ++
  CDO70229.1 231 LLLPvavkigppqfRRrVVDMIPADQVQRMKDISDILHARSVLIFNEKKTALAQGdeaikhqIGEGRDIMSILLRANmLASDED-KLGDDELIGQISTM 328
                 3322111111111022366677777777777777777777777888888888888****9986679**********98777887.************** PP

                 HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSST CS
        p450 271 lfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkr...eptyddlqklpyldavikEtLRlhpvvp 339
                 ++aG+dTt++tl+ +L++La++Pevqe+ r Ei +++  +      +++d l++lpylda+++EtLR +  + 
  CDO70229.1 329 ILAGMDTTANTLARILHLLAQHPEVQERARAEIIQAVeAE-GngdMLDFDRLMELPYLDAICRETLRTYVSTS 400
                 ***********************************99543.336699********************997665 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 6e-18
                 TEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS......CTESSCTT--TTEEGGGS-TTHHHHHHHHH CS
        p450 354 gylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg......nskrksfaflPFGaGpRnCiGerlArmelk 423
                    ipkGt+++  +ya++r+pe++ p++++ +peR+l+         +  + +   + F  G R+CiG ++A++e++
  CDO70229.1 447 AIPIPKGTRIVADVYACNRNPELWgPDADKWRPERWLEGVPkavedaRVPGVYSHLMTFIGGSRACIGFKFAQVEMS 523
                 478**********************************9855778887666788999********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 3573.32
//
Query:       CDO70230.1  [L=251]
Description: hypothetical protein BN946_scf184942.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-15   56.2   0.1    1.5e-14   54.6   0.0    1.8  2  Pro_CA    Carbonic anhydrase
  ------ inclusion threshold ------
       0.12   11.9   0.0       0.22   11.1   0.0    1.3  1  ThiI      Thiamine biosynthesis protein (ThiI)


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29   2.6e+03      63     101 ..      37      74 ..      28      91 .. 0.54
   2 !   54.6   0.0   1.7e-18   1.5e-14       2     156 .]     107     240 ..     106     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                 TT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHHHCHHH CS
      Pro_CA  63 skCGavkaalkaekseeeagaidkwlekirealekveee 101
                  +C   +a l+ae+ +++++ +++  +k  +a  +++ +
  CDO70230.1  37 RSCSVAAAKLSAED-ANKSPELSDAHRKPSPAQLQQDIH 74 
                 35777776676544.555777777766666665554333 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 1.7e-18
                 EEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHHHCHH CS
      Pro_CA   2 lvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalkaekseeeagaidkwlekirealekvee 100
                 l+++C+D+R++p  +++++ G+  +vrn+g +     ++ + ++  + + l++++i V+ H++CG+v+  ++       ++++++++++ +++ ++ ++
  CDO70230.1 107 LIVTCMDARMNPYAFLGVKEGEAHIVRNAGGVA----KEAIRSIVISQRLLGTREIAVIHHTGCGMVT--FN-------TPQLRTIVKESDPSNAALAR 192
                 89******************************9....78899**************************..32.......35688888888888888776 PP

                 HHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS-EEEEEEEETTTTEE CS
      Pro_CA 101 elesekekearerlleeenVaeqlenLlekpvvreavekgklkvhGlvydletGev 156
                   +++ +  + +    ee+V+e ++ L e+p+v         kv+G+vy++etG+v
  CDO70230.1 193 VVDEI-DFLEFS--GLEESVREDVKFLQENPLVLPG-----TKVTGWVYEVETGKV 240
                 55554.344444..4599**************9843.....68***********97 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.4e-05      0.22     145     186 ..     136     181 ..     125     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.4e-05
        ThiI 145 igldKeei...iklAkeigtyeisiekedkCsvla.khPttkakle 186
                  g+ Ke i   +   + +gt ei+++++  C++++ + P++++ ++
  CDO70230.1 136 GGVAKEAIrsiVISQRLLGTREIAVIHHTGCGMVTfNTPQLRTIVK 181
                 567777662214445779*****************9***9997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1699.92
//
Query:       CDO70231.1  [L=992]
Description: hypothetical protein BN946_scf184942.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-99  329.8   0.1    1.4e-98  329.4   0.1    1.2  1  RIC1         RIC1
     0.0014   18.9   0.1        2.9    8.2   0.1    3.5  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0039   17.1   1.8        1.6    8.7   0.0    3.0  3  PD40         WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
       0.17   12.3   0.1        0.4   11.2   0.1    1.5  1  SMP          Seed maturation protein


Domain annotation for each model (and alignments):
>> RIC1  RIC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.4   0.1  3.1e-102   1.4e-98       1     251 [.     708     966 ..     708     967 .. 0.95

  Alignments for each domain:
  == domain 1  score: 329.4 bits;  conditional E-value: 3.1e-102
        RIC1   1 lenslwlfdgedikvwldlleiesa.des.....kkes.leesvripldfypLsvlldkgiilGvesevslrrslsfalfrletktqlfLhhvLrqlLe 92 
                 lenslw++dg++i+vwl++l+ie +   +      +++ ++esv+ipldfypLsvl+dkgii+Gve e ++r++lsf++fr++t+++lfLhh+L  +L 
  CDO70231.1 708 LENSLWGYDGQGIRVWLNALAIEPSaP-EvedaeGFADnVKESVNIPLDFYPLSVLMDKGIIIGVEVEAATRTNLSFTMFRHATSSHLFLHHILLVHLG 805
                 79********************99961.3456677777799********************************************************** PP

        RIC1  93 rnlleeAlelassyqklsyFahaLElLLhevLeeeadakepsda..seeeealLpavvefldefpeyldvvvqCaRKtevarWrtLfdvlgsPkeLFee 189
                 +++++eA+ +as+yq+l+yFah+LE+LLh+v+ee+a+a e  ++   ++e++lLpa++efld+f+ +ldvvv+CaRK+e++rW++Lfd++g+Pk LFe 
  CDO70231.1 806 NSQVKEAVTFASHYQHLVYFAHSLEILLHSVVEEDAEAIEAAEKqeDPKEQSLLPATIEFLDHFDDALDVVVGCARKIEMTRWPRLFDIVGNPKILFES 904
                 ************************************9977633334789************************************************** PP

        RIC1 190 cleleklktAasyLlvLqnleeleessqdavrLLklaleekdwelckdLlRFlaaidesgea 251
                 cl++++lktA+syLl+L+ le+l++++ da+rLL+ a+  ++w+lc+++lRFl++id++g+a
  CDO70231.1 905 CLSAGRLKTAGSYLLILHGLEQLDNTNGDAIRLLRSAVTAQEWQLCREILRFLHSIDDTGAA 966
                 **********************************************************9986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0037        17      35      68 ..      76     109 ..      29     124 .. 0.70
   2 !    8.2   0.1   0.00065       2.9      35      60 ..     342     367 ..     331     372 .. 0.84
   3 ?   -1.0   0.0       0.5   2.3e+03      39      64 ..     493     518 ..     449     537 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0037
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                   +e +e  sL+W+pdg+ +++ +  + + l+ +e
   CDO70231.1  76 IQEHGENVSLQWSPDGQKIVIQTTGSYLVLVTVE 109
                  455555669************9999999888876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00065
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdg 60 
                   +  ++v  ++W+ dg +Lav++++g
   CDO70231.1 342 RDGTGSVCTMEWSSDGYVLAVGWEKG 367
                  45678899***************998 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.5
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrl 64 
                    +r  + + dg+l+a+a   g v+ 
   CDO70231.1 493 WPIRYSSLSGDGRLIAIAGRRGLVHY 518
                  55666667889999999999888775 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00036       1.6      16      28 ..      87      99 ..      82     103 .. 0.89
   2 ?   -2.7   0.1       1.5   6.5e+03      16      23 ..     353     360 ..     353     361 .. 0.80
   3 !    6.4   0.2     0.002       9.1      15      37 ..     499     528 ..     494     529 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00036
                E-TTSSEEEEEEE CS
        PD40 16 fSPDGkrlaFsSd 28
                +SPDG+++++  +
  CDO70231.1 87 WSPDGQKIVIQTT 99
                *********9766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 E-TTSSEE CS
        PD40  16 fSPDGkrl 23 
                 +S DG  l
  CDO70231.1 353 WSSDGYVL 360
                 9****766 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.002
                 EE-TTSSEEEEEEECT........TCEEEE CS
        PD40  15 sfSPDGkrlaFsSdRg.......sGkpdIy 37 
                 s+S DG+ +a++ +Rg       sG++ ++
  CDO70231.1 499 SLSGDGRLIAIAGRRGlvhysstSGRWKLF 528
                 8999************98888777777665 PP

>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   8.8e-05       0.4      18      38 ..     835     855 ..     823     862 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.8e-05
         SMP  18 pVtpeDAaavqaAEaraagea 38 
                  V +eDA+a++aAE + ++++
  CDO70231.1 835 SVVEEDAEAIEAAEKQEDPKE 855
                 5789***********999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6745.31
//
Query:       CDO70232.1  [L=360]
Description: hypothetical protein BN946_scf184942.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-05   23.2   0.2    0.00093   19.9   0.0    2.4  3  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
     0.0081   16.6   0.0      0.051   14.1   0.0    2.1  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     1e-07   0.00093      44     117 ..      63     143 ..      45     144 .. 0.79
   2 ?   -3.1   0.0       1.4   1.3e+04      19      33 ..     148     162 ..     146     165 .. 0.83
   3 ?    0.0   0.0      0.16   1.4e+03      29      57 ..     295     323 ..     288     340 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1e-07
      DIOX_N  44 idelfeaareFFalPeeeKekl..akspsfrGysrlgeektdgkkldw.kesfdlgtelp..eddp......agkplegpnqwPe 117
                 +++l+++a +F +l  +++e++   ks+   G+s+ g+e  +g k+d  k s++ ++  +  +         a+ +++g+n+wP+
  CDO70232.1  63 RERLLKLAYRFANLDPKVRERYadPKSRYSFGWSH-GKEFMNG-KPDTmKGSYYANPVIDepD--VspelrqAYPEYYGKNIWPS 143
                 6899******************55555699*****.9999999.6665288888888654322..13466779999********8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
      DIOX_N  19 aeqlreAcrevGffy 33 
                 +++ ++A+++ G f+
  CDO70232.1 148 VQEFEQAFKDLGRFV 162
                 789999999999885 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.16
      DIOX_N  29 vGffyvvnhgvpeelidelfeaareFFal 57 
                  G +  + h v    ++++ +++re Fal
  CDO70232.1 295 AGKLRATPHCVRVGAAQDAENVSRETFAL 323
                 566777889999999999999***99998 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.7e-06     0.051       5      89 ..     201     310 ..     197     327 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.7e-06
                   EEEEEE-S------........---EEEEEESSSEEEEEEE-......TT---EEEE............TE.EEE----TTEEEEEE-HHHHHHTTS CS
  2OG-FeII_Oxy   5 lvlnyypphpdpev........ilglgahtdaslltillqdd......vgglevfkd............gk.wlrvppvdnslivniGdallflsng 74 
                   ++l+y+pp+p++ +        ++ +g h d+sllt l +         g+  v+++            g+ +++v  + ++l  + G al++ + g
    CDO70232.1 201 RLLHYFPPSPENPLpaeneaidSW-CGFHLDHSLLTGLCSAMylrrepSGEPSVVQSpspssglyirtrGGaLTKVSIPADCLAFQTGEALELATAG 296
                   567788888777765555555322.4555555554443333333333233334422233334444444666699999999***************** PP

                   -S----EEE----GT CS
  2OG-FeII_Oxy  75 ryksvlHrVlpvneg 89 
                   +++ ++H V+ v   
    CDO70232.1 297 KLRATPHCVR-VGAA 310
                   *********8.5443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2345.05
//
Query:       CDO70233.1  [L=1426]
Description: Glycosyltransferase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-27   96.4   0.0    4.2e-27   94.9   0.0    1.9  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    3.9e-24   84.7   0.2      4e-17   62.1   0.0    3.4  3  GRAM             GRAM domain
    6.7e-13   49.1   0.1    2.7e-11   43.9   0.2    2.8  2  PH               PH domain
    2.1e-06   26.9   0.0    3.8e-06   26.0   0.0    1.4  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    0.00029   21.2   1.8      0.016   15.6   1.8    2.5  1  PH_11            Pleckstrin homology domain
  ------ inclusion threshold ------
      0.012   15.9   0.1      0.027   14.8   0.1    1.6  1  PH_8             Pleckstrin homology domain
      0.038   14.0   0.0      0.083   12.9   0.0    1.5  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
      0.044   14.1   0.0       0.16   12.3   0.0    2.0  1  PH_6             Pleckstrin homology domain
       0.13   12.6   0.0        0.3   11.5   0.0    1.5  1  PH_2             Plant pleckstrin homology-like region


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   2.1e-30   4.2e-27       2     139 .]     948    1072 ..     947    1072 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 2.1e-30
                       EEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---G..HCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCC CS
  Glyco_transf_28    2 vllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiage..klrrklspknlkeilkvlkavvkakkilkeakpda 91  
                       ++l++G++G+v+P++Alak+L+++gh+Vr ++t+ +++e++ e++g+ef  ++g+  +l+r + ++n +           +++ ++++ +++
       CDO70233.1  948 TFLTIGSRGDVQPYIALAKGLMADGHRVR-IATHGEFKEWV-ESHGIEFGYVGGDpaELMR-ICVENGTF----------TFRGWIDDLLKT 1026
                       799**************************.**********9.*******999999434444.33333333..........5677******** PP

                       CCCCCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCCE CS
  Glyco_transf_28   92 vvgtggyvslpaviaaplaripviihEqnaipglanktlsrtatkvai 139 
                       +++++  + ++++i++p+a+++ +i+E+++ip+++++t+ + +t++++
       CDO70233.1 1027 SWEAC--QGTDVLIESPSAMGGYHIAEALKIPYFRAFTMTWSRTRAYP 1072
                       *****..9*************************************986 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.9e-06    0.0037       3      46 ..     312     353 ..     310     376 .. 0.87
   2 ?    1.1   0.0      0.18   3.6e+02      42      97 ..     451     509 ..     448     523 .. 0.68
   3 !   62.1   0.0     2e-20     4e-17       2     110 ..     771     878 ..     770     881 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.9e-06
                 HHHHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE CS
        GRAM   3 frkkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrs 46 
                  r++f+ l + ++++a++ C llr+ ++ qG +ylt+ ++cF  
  CDO70233.1 312 LRDIFE-LKDINEVVAEMPCWLLRS-VLLQGYMYLTDAYICFFA 353
                 588999.999999999*********.****************65 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
                 EEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-.....EEEEE--TT CS
        GRAM  42 lcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdl...elaFagfvt 97 
                 ++ +  + g+s k+ +p+ +++++e+s+  +   +  i+v+ +s dl    + Fa f +
  CDO70233.1 451 VMLKATNMGDSIKIAIPYPAVVDVERSNAMDFSETIEIKVQDRSSDLaldSYFFAYFTD 509
                 6667788999999*************665555544455555444444446666666655 PP

  == domain 3  score: 62.1 bits;  conditional E-value: 2e-20
                 HHHHHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---E.EEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTHH CS
        GRAM   2 lfrkkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskk.vvlpladikriekstsaanllengiqvetsskdlelaFagfvtrd 99 
                 +fr++f  + + E+ll  ++ yl r  +pv+Grly++n++lcF+s+ + ++ + ++lpl+di + ek++s +   ++++ +  ++++l l+Fa +  rd
  CDO70233.1 771 KFRQEFA-FDDKEHLLGMFSGYLYRL-LPVYGRLYVSNNYLCFKSSGPLTMRTrMILPLKDILATEKQKSFHFGHHGLVVIVRGHEELFLEFADEDRRD 867
                 79*****.****************99.*********************999999999****************************************** PP

                 HHHHHHHHHHH CS
        GRAM 100 eaiefieellk 110
                  + ++ +++l+
  CDO70233.1 868 AFASVVQRQLE 878
                 *****999987 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.2   1.4e-14   2.7e-11       1     104 [.     362     452 ..     362     453 .. 0.92
   2 ?    1.9   0.0      0.16   3.2e+02      43     102 ..     820     875 ..     799     878 .. 0.66

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.4e-14
                 EEEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHH CS
          PH   1 vvkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWika 99 
                 v k+G L+kk ++ k +w ++wfvLk+++l++y+++     + p g+++l+ + + e      p ++  ++lr++    ++++ l+a+s  +r eWika
  CDO70233.1 362 VLKSGSLMKKAQRTK-RWIRHWFVLKNDVLSWYQSP--ADPYFPHGVVDLRYAISCE------PVNEKDIRLRTN----QKSIRLSADSGKSRDEWIKA 447
                 679***********9.********************..89999************95......568888888777....69****************** PP

                 HHHHH CS
          PH 100 iqsai 104
                 i++++
  CDO70233.1 448 IRKVM 452
                 **986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
                 SEEEEEESTTEEEEEEECTTSSSSTSEEEE....EESTSSSTEEEEEEESSHHHHHHHHHHHHH CS
          PH  43 epkgsislsncevvevvatedpkrkfcfel....riverngsrtyllqasseeerkeWikaiqs 102
                 + +++++l+++  +e       ++ f+f +    +iv  +g+++++l++++e+ r ++ +  q+
  CDO70233.1 820 RTRMILPLKDILATEK------QKSFHFGHhglvVIV--RGHEELFLEFADEDRRDAFASVVQR 875
                 5677888888888854......444444445543444..4459**********99988777666 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.9e-09   3.8e-06     269     409 ..    1182    1328 ..    1087    1338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.9e-09
       UDPGT  269 vqssGehGvvvfSlGsmvseipeekanaiAsaLakipqkvl....W..rfdgkkPstLaknt......llvkWlPqndlLgHPktkAFvtHaGangv 353 
                  ++   ++ +v++ +Gs+v + p    + + +a+ +++   +    W  r+  +kP   ++          +  +P   l +  ++ A   H+Ga + 
  CDO70233.1 1182 RK--AKKKIVYIGFGSIVVPDPKAMTRCVIDAIVESGVYAImskgWsdRLVKNKPAETEPEEplpkqiYPISSIPHDWLFK--QIDAACHHGGAGTT 1274
                  33..37789999999999999999999999999999987663444433344577777777763333112233456555544..7889999******* PP

       UDPGT  354 yEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindk 409 
                    ++  G+P ++ P+Fgdq   + r+ea g +  + v+++t + l++Al+e   ++
  CDO70233.1 1275 GASLRAGIPTIIKPFFGDQFFWADRVEALGVG--AAVRKLTVDSLAQALREATTNE 1328
                  ****************************9866..5678999999*****9877666 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.8   8.1e-06     0.016       5     101 ..     370     447 ..     364     451 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.1e-06
       PH_11   5 lkkkgskaWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneeteeWvea 101
                 +k ++ k W r wf vlk+ vL++Y+s+ + +             +++++  ++a      i  +  +++++ + t++k + l++ds + + eW++a
  CDO70233.1 370 KKAQRTKRWIRHWF-VLKNDVLSWYQSPADPY------------FPHGVVDLRYA------ISCEPVNEKDIRLRTNQKSIRLSADSGKSRDEWIKA 447
                 34455559******.*************9999............44444444443......233444444444444445555555555555555555 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.3e-05     0.027       3      88 ..     368     451 ..     366     452 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
        PH_8   3 llkkrrkklqgyakRfFvLdlksstlsYyrddnssalrg.kiplslaiisan.eekreiiidsGaevWeLkasnekdfqeWvealeka 88 
                 l+kk+ ++++ + + +FvL  k+  ls+y++  +  + +  + l+  +is++  ++++i + +  +  +L a++ k  +eW++a+ k+
  CDO70233.1 368 LMKKA-QRTKRWIRHWFVL--KNDVLSWYQSPADPYFPHgVVDLRY-AISCEpVNEKDIRLRTNQKSIRLSADSGKSRDEWIKAIRKV 451
                 66766.577889*******..99*********99988540445555.55665167899**************************9986 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.083      73     157 ..    1262    1344 ..    1235    1354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                       H-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH....... CS
  Glyco_tran_28_C   73 adLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskas.....aa 157 
                        d    ++Gagt   +l++g p+I+ p+      +q   a  +e  g++  +++ ++  ++L++al+e  ++++ + e+++a      a+
       CDO70233.1 1262 IDAACHHGGAGTTGASLRAGIPTIIKPFFG----DQFFWADRVEALGVGAAVRKLTV--DSLAQALREATTNEK-QIERARAVgqrirAE 1344
                       566667**********************99....***************99987666..************998.577777654444444 PP

>> PH_6  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.8e-05      0.16      36     111 ..     375     450 ..     341     451 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
        PH_6  36 daheviawAsetGkGLLffskkedkaspsgvinLadasevaadgeqkFhltakGkkhtFkasstaeRdnWvaqlke 111
                 +++ +  w     + L ++    d   p+gv++L  a   ++  e+   l ++ k  +  a s   Rd+W++++++
  CDO70233.1 375 TKRWIRHWFVLKNDVLSWYQSPADPYFPHGVVDLRYAISCEPVNEKDIRLRTNQKSIRLSADSGKSRDEWIKAIRK 450
                 355566666667777888999999999**************9999***************************9975 PP

>> PH_2  Plant pleckstrin homology-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015       0.3      69     102 ..     420     453 ..     403     456 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
        PH_2  69 yyfglkTaeglvefeckskaekkvWvegiknlLs 102
                   + l+T+++ + + ++s ++++ W+++i++ + 
  CDO70233.1 420 KDIRLRTNQKSIRLSADSGKSRDEWIKAIRKVML 453
                 5689*************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.50
# Mc/sec: 8651.88
//
Query:       CDO70234.1  [L=206]
Description: hypothetical protein BN946_scf184942.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-14   54.5   5.6    1.5e-14   54.2   5.6    1.1  1  SUR7             SUR7/PalI family
  ------ inclusion threshold ------
       0.11   12.6   0.4       0.11   12.6   0.4    1.8  2  DUF1435          Protein of unknown function (DUF1435)


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   5.6   1.6e-18   1.5e-14      34     210 ..      15     194 ..       4     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.6e-18
        SUR7  34 ylskfdlsgldlaqigladvysfgvwgyCdnsdvnytkCskpkagypfdp...l.eelnsesngkvd..lPsnlrktlsklnnltkalfilhiialvls 126
                 y  ++      ++q+gl+d+y+fg+++yC    ++++ Cs+++a+  f+p   l +++ ++++g  +  + + +  + s+l n t+ +  l+ii+ v++
  CDO70234.1  15 YATNATAP--LGQQQGLRDTYKFGLYSYC-GYVNGTGVCSNTTAASRFQPftaLtSDMLTNYTGFTTalITQGTFIDSSYLGNFTNGAYYLIIIGSVAT 110
                 44444444..345569*************.8888999************94432555555555555599777777788889****************** PP

        SUR7 127 fislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkin........lkefgikaslglkflafaWlalaaallvv 210
                 +++l++gll +        +l+fl ++++v+  la+l++a + t++  ++             l  +gi++s g  ++  +W+a+a++l++ 
  CDO70234.1 111 ALALFTGLLKHT-------VLFFLSTTFAVIGSLALLIGATIWTVIIKKAESINDfvvghpdeLVPLGINVSTGDGIFL-LWAAWACLLVSI 194
                 ***********8.......6**********************999998777554488999999999*********9995.9******99986 PP

>> DUF1435  Protein of unknown function (DUF1435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   1.3e-05      0.11      34      72 ..     101     141 ..      79     144 .. 0.88
   2 ?   -2.6   0.6      0.68   6.1e+03       8      18 ..     185     195 ..     182     202 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
     DUF1435  34 viivlallltvvmLyhkrlRHylL..LPsclalagglalvl 72 
                 ++i+++ ++t++ L+   l+H +L  L  + a++g+lal++
  CDO70234.1 101 YLIIIGSVATALALFTGLLKHTVLffLSTTFAVIGSLALLI 141
                 6899*****************998667899*******9986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.68
     DUF1435   8 sgWgvlLPavl 18 
                 ++W+ lL  +l
  CDO70234.1 185 AAWACLLVSIL 195
                 67888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1411.13
//
Query:       CDO70235.1  [L=563]
Description: Glycoside Hydrolase Family 72 / Carbohydrate-Binding Module Family 43 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-88  294.7   0.0    1.2e-87  294.1   0.0    1.3  1  Glyco_hydro_72  Glucanosyltransferase
    1.9e-19   70.1   0.8    5.2e-19   68.7   0.8    1.8  1  X8              X8 domain
  ------ inclusion threshold ------
      0.011   15.2   0.1      0.022   14.2   0.1    1.4  1  Cellulase       Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.1   0.0   2.1e-91   1.2e-87      17     313 ..      32     341 ..      16     343 .. 0.91

  Alignments for each domain:
  == domain 1  score: 294.1 bits;  conditional E-value: 2.1e-91
                     TEEEETTT-BBE-EEEEE--BE-----.........-SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-B CS
  Glyco_hydro_72  17 nkffdsksgeqfyikGvdyqpggseev.........sslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvildlne 102
                      ++++++ g++f+ikG++yq++g+ ++         s+++dpl+d +aC+rd+++l++l+vnt+rvy+v++s++hd+Cm+als+agiy i+dl+ 
      CDO70235.1  32 GRYLYTEDGNRFFIKGIAYQEQGALSTdpnnpfsepSTFIDPLTDGSACSRDLPFLQQLEVNTIRVYSVNSSLNHDDCMNALSQAGIYTIIDLAL 126
                     47899*****************997667899****9*********************************************************** PP

                     T.TBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTH.HHHH CS
  Glyco_hydro_72 103 p.kesinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkkerkiPvGysaaddaelr.vela 195
                     p + si+r++p  s++++ll+ + ++i+af++y+nvl++  Gnev+ d s t a++++ka+ rdv++y+++ k+    +Gy+a d +++  + la
      CDO70235.1 127 PvNGSIDRNNP--SWTTNLLDLYIETINAFNKYDNVLAYNVGNEVIVDPSGTGAAPFIKAAARDVRAYLNSIKSSA-LIGYAAIDGDDNWvLPLA 218
                     9889*******..********************************************************9988765.59******877751679* PP

                     HHTTBTT-.......--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES-SB--SS CS
  Glyco_hydro_72 196 eylaCgded.....dkadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvyeyseean 285
                     eyl+C+ +      + +d+fgln+yeWCg    ++s y+ ++ +f++y iP ++se+GC k  pr +tev  ++s  m++++sGG+++ y+  ++
      CDO70235.1 219 EYLSCDPTGsnsgsSAIDLFGLNNYEWCGDA--TASVYSGKNGDFAGYNIPAYFSEFGCVKQPPRLWTEVPVIFSPPMSNIWSGGVAFSYFPAQS 311
                     *****876555665699************86..5799*****************************************************96544 PP

                     S...--SEEE-TTS-EEE-THHHHHHHHHHH CS
  Glyco_hydro_72 286 n...yGlvkiddddvkkllkdfenlkseykk 313
                     n   +G+v+id++ v+   +df +lk +y +
      CDO70235.1 312 NdgqFGMVTIDGNTVT-PNDDFGRLKAQYGN 341
                     32339*********99.99********9976 PP

>> X8  X8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.8   8.7e-23   5.2e-19       1      76 []     390     472 ..     390     472 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 8.7e-23
                 -EEEE-TTS.-HHHH.HHHHHHHTTT.....SSSSTT---SS.....S-SS--TTHHHHHHHHHHHHHHTSSGGG--S-SSEE CS
          X8   1 lwCvvkdsv.deeel.gdlldyaCge.....adCtaiqangttGkYGcyspcsvkqklsyalnsYYqkqgkkssaCdFsgsat 76 
                 l+C +++++ +++++ g+lld  C+      a+C++i+angttG+YG++ +c++  kls+++++YY+ +++ +++CdF+g+at
  CDO70235.1 390 LSCQFTPKTtNTSAIvGSLLDLGCSLlgqngANCNDISANGTTGTYGRVAFCDPDTKLSFVMSEYYELTNRVATSCDFAGNAT 472
                 5899997773444446*********98755555************************************************97 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.7e-06     0.022      60     137 ..     102     175 ..      84     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.7e-06
                 HHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCT CS
   Cellulase  60 slerveevvkyakenglyvildiHseegwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntg 137
                 s  + ++ +++  ++g+y+i+d+  +    ++++   ++ + +  + +l  +  + ++k+d+v+++++ NE     +g
  CDO70235.1 102 SSLNHDDCMNALSQAGIYTIIDLALP----VNGSIDRNNPSWTTNLLDLYIETINAFNKYDNVLAYNVGNEVIVDPSG 175
                 555678999***************95....5677777777777777777888899999*************9775444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3605.56
//
Query:       CDO70236.1  [L=473]
Description: Carbohydrate Esterase Family 4 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-30  104.3   0.0    6.8e-30  103.5   0.0    1.4  1  Polysacc_deac_1  Polysaccharide deacetylase
     0.0085   15.3   0.0      0.013   14.7   0.0    1.2  1  Glyco_hydro_57   Glycosyl hydrolase family 57


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   7.6e-34   6.8e-30       4     122 ..     196     314 ..     193     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 7.6e-34
                      TTSTEEEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS-- CS
  Polysacc_deac_1   4 kgkksvalTfDdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgre 97 
                      ++k ++ lT+Ddgp   t  +l +L++ ++katff++g+ + +yp +++e + + ++i+ Ht++h+ +++l+++++ +e++++k++++++lg +
       CDO70236.1 196 PDKMTWGLTYDDGPAPHTGDLLAYLDQVNLKATFFIVGSRAISYPALLQEEYMAQHQIAVHTWSHPEMTTLTNDQIIAELGWSKKIIKDVLGVT 289
                      5677899*************************************************************************************** PP

                      --EEE-GGGEE-HHHHHHHHHTT.E CS
  Polysacc_deac_1  98 prlfryPygsasatvlevarelgfa 122
                      p+++r+Pyg+ +++v+++a+++g++
       CDO70236.1 290 PTYWRPPYGDVDNRVRAIAKAMGLQ 314
                      ***********************97 PP

>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06     0.013     134     197 ..     253     315 ..     240     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-06
                     EEEE-TT-B-GGG-S-HHHHHHHHHHHHHHHHHHHSS--SBEE-GGG-B--SHHHHHHHTT--E CS
  Glyco_hydro_57 134 lltspyyHpllpllpdsedieaqvkkarelyeeyfgqePrgfwlpElavspeileilaelGfey 197
                     + + + +Hp +  l+  ++i+a++  +++++++ +g++P++ ++p   v++++ +i + +G + 
      CDO70236.1 253 IAVHTWSHPEMTTLTN-DQIIAELGWSKKIIKDVLGVTPTYWRPPYGDVDNRVRAIAKAMGLQT 315
                     6678999*******99.9******************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2827.42
//
Query:       CDO70237.1  [L=272]
Description: hypothetical protein BN946_scf184942.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-26   92.1   2.3    3.2e-26   92.1   2.3    3.2  3  NAP       Nucleosome assembly protein (NAP)
  ------ inclusion threshold ------
      0.028   14.9   2.9       0.19   12.2   0.8    2.2  2  GOLD_2    Golgi-dynamics membrane-trafficking
      0.071   13.3   0.1       0.15   12.2   0.1    1.5  1  DicB      DicB protein
       0.84    9.7  10.0      0.065   13.3   5.7    1.5  2  YL1       YL1 nuclear protein


Domain annotation for each model (and alignments):
>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.3   0.00011      0.49      11      47 ..      31      67 ..      23      68 .. 0.91
   2 !   92.1   2.3   7.1e-30   3.2e-26      86     269 ..      67     234 ..      66     235 .. 0.78
   3 ?   -5.0   1.3       2.9   1.3e+04     236     236 ..     254     254 ..     241     270 .. 0.40

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
         NAP 11 kelskleaefqeevlelekkyaalykplyekrseIin 47
                 +l++++++ ++  l+le+  ++++ p+yekr+e+++
  CDO70237.1 31 VKLQTIQKDIARVELALERAAQKKMVPVYEKRREVVK 67
                57889999***************************97 PP

  == domain 2  score: 92.1 bits;  conditional E-value: 7.1e-30
                 TTSTTHHHHHHHTSHHHHTT--.HHHHHHHTTEEEEEEEE-------EEEEEEEE-S-SSB--SEEEEEEEE----.........----EEEEEE---- CS
         NAP  86 kgipeFWltvlknvellaeliq.erDepiLkhLkdirveyllskekegFtleFeFdeNpyFtnevLtktyilksev.dkedpfiydgpeiekaegckId 182
                 k ip+FW  +l n+ +la   q   D+ +L++L+d+ + ++  ke++ FtleF+F+eNpyF+n+vL+k+y +   + + +d+   d  + ++ +  + +
  CDO70237.1  67 KAIPKFWPVALMNHGMLALHAQhSSDQAALSYLEDLWIVRD-PKESRCFTLEFYFKENPYFSNTVLKKEYKYVPPPvEGDDQA--D-ADGVTETMLDFS 161
                 89****************9977589**************84.454666*************************7774444433..3.334456677788 PP

                 B-TT--TTS----------...------------........-GGGGS--B---------------HHHHHHHHHHHHHHHHHTHHHHHHHHHHT CS
         NAP 183 Wkegkdvtvktvkkkqknkktketrtvtkkvpke........SFFnfFsppkvpeeeeeeeeeeeeleelleadyeigealkdkiiPkAveyFtg 269
                 W+++ +   + +  k  +k  + t+  +++ +++        SFFnfF+                      e  ++ig ++++++ P+A+eyF+g
  CDO70237.1 162 WERDVQPQATKIDWKDDSK--NLTKLHPRVKEDDddlpsesgSFFNFFEV--------------------AEDPFDIGVTIANDVFPEAIEYFLG 234
                 8887777777666666666..444444444444455888899******92....................124699*****************99 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 2.9
                 - CS
         NAP 236 e 236
                 e
  CDO70237.1 254 E 254
                 1 PP

>> GOLD_2  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.046   2.1e+02      58      95 ..      24      61 ..       8      73 .. 0.76
   2 ?   12.2   0.8   4.2e-05      0.19      19      83 ..     204     270 ..     195     272 .] 0.69

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.046
      GOLD_2 58 edeeeeeeeekveeedvekgsvkaakprldeivpvyrr 95
                e ++e+  + ++ ++d+ + + + +++ ++++vpvy +
  CDO70237.1 24 ELTDEDAVKLQTIQKDIARVELALERAAQKKMVPVYEK 61
                555666666788889999999999***********954 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.2e-05
      GOLD_2  19 rlfwefatdeydiGfGvyfewteatskavsvkvs..esddeedeeeeeeeekveeedvekgsvkaak 83 
                   f+e a d +diG  +  +      +    + +  + d +ed+e++e++e++ee d+ek ++k++k
  CDO70237.1 204 FNFFEVAEDPFDIGVTIANDVFPEAIEYFLGHAGgdDIDSDEDDEDSEDDENAEEIDLEKPRQKKQK 270
                 4599**************9988777776665554114445555556666788899999998876654 PP

>> DicB  DicB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.4e-05      0.15      11      28 ..     210     227 ..     204     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
        DicB  11 seGcfeiGvtisnPvfte 28 
                 +e  f+iGvti+n vf e
  CDO70237.1 210 AEDPFDIGVTIANDVFPE 227
                 7889************88 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.3     1e+04      77      79 ..      49      51 ..      24      70 .. 0.49
   2 ?   13.3   5.7   1.5e-05     0.065      50      84 ..     239     270 ..     145     272 .] 0.74

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.3
                xxx RF
         YL1 77 rqe 79
                r++
  CDO70237.1 49 RAA 51
                111 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.5e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  50 Dsdfdsdeedeesdeeedeeegekelerqerkkrk 84 
                 D d+dsde+de+  +e+de+++e +le++++kk+k
  CDO70237.1 239 D-DIDSDEDDED--SEDDENAEEIDLEKPRQKKQK 270
                 3.6788887665..788888999999988777773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.36s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 1487.35
//
Query:       CDO70238.1  [L=659]
Description: hypothetical protein BN946_scf184942.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-89  300.3   0.1    2.3e-89  299.9   0.1    1.2  1  Syja_N    SacI homology domain


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.9   0.1   1.3e-93   2.3e-89       1     320 []      61     357 ..      61     357 .. 0.90

  Alignments for each domain:
  == domain 1  score: 299.9 bits;  conditional E-value: 1.3e-93
      Syja_N   1 ygilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFsydlDltrs 99 
                 ygi+G+i+l  + y++vit+re  g+l ++ +iy+ te ++lpl+       +++        ++ ++  e++ll+l+ ++  + g+f+Fsy +D+tr+
  CDO70238.1  61 YGIYGIITLAMSDYIIVITGRELRGHLMRQ-NIYRATEYDILPLNPD----VSVH--------SPPNAV-ESHLLALV-RSHLQGGTFFFSYAWDITRR 144
                 7*********99**************9776.************9544....1222........233444.899**999.67778*************** PP

      Syja_N 100 lqrqlekssesskslplweraderFvWNrhllkpli.......eaeldswllpviqGfveqsklklsksqkekekkevtltlisRrsrkraGtRylrRG 191
                 lq+q  +  +++ +++lwe ad+rF+WN++l++ +i       +++l+ ++lpvi+G +  + +++         ++++l+lisRrsr+raGtRy+rRG
  CDO70238.1 145 LQAQWMTL-QQDGDKALWEIADDRFFWNKFLQSRFIditstsvDQNLSAYILPVIYGTFDIRPVSVGI-------HQLRLCLISRRSRYRAGTRYFRRG 235
                 *****985.7777778******************998887776558*************777776553.......679********************* PP

      Syja_N 192 iddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlkykpkirierseeenleafkkHfekllkrYgkvvvvnLlekkgrEkkLgea 290
                 id+eG+vANf EtEqil+v  +++++  lSfvqiRGSiPl+W +++tl+ykp+++i  + +++ +a+++H+++ ++ Yg++ +vnL+++kg+Ek+++ea
  CDO70238.1 236 IDSEGHVANFNETEQILLVG-GDDSGTQLSFVQIRGSIPLYWAEINTLRYKPDVQIM-ELQDTIDAMRAHLQENVNLYGEQAIVNLVNHKGHEKPVKEA 332
                 ******************86.6666889****************************6.8999************************************* PP

      Syja_N 291 yekavkklnklekekkklkyveFDfhkeck 320
                 +ek++++ +      ++ +y++FDfh+eck
  CDO70238.1 333 FEKYIQEAK-----PPRTRYEYFDFHSECK 357
                 ********8.....79*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 3872.45
//
Query:       CDO70239.1  [L=248]
Description: hypothetical protein BN946_scf184942.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-61  206.1   0.4    4.1e-61  205.5   0.4    1.2  1  LRR_9     Leucine-rich repeat
    2.9e-08   33.8  16.1    2.1e-05   24.8   5.3    3.4  4  LRR_4     Leucine Rich repeats (2 copies)
    1.7e-07   30.9   5.5    1.7e-07   30.9   5.5    2.1  2  LRR_8     Leucine rich repeat
  ------ inclusion threshold ------
        5.5    7.9   7.8         56    4.9   0.2    4.3  5  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.5   0.4   9.2e-65   4.1e-61       1     167 [.       1     167 [.       1     174 [. 0.98

  Alignments for each domain:
  == domain 1  score: 205.5 bits;  conditional E-value: 9.2e-65
       LRR_9   1 mvkltaelikqsaqyinairereldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnne 99 
                 mvklt+el++   + +n+++er+ldlrgy ip ienlG t dq d id++dn i  l ++Pll+rl+tlll+nnri  i++ l+ ++Pnl++lvltnn+
  CDO70239.1   1 MVKLTPELLESVPSQLNPVKERQLDLRGYTIPAIENLGITKDQNDCIDFTDNSITVLGNIPLLRRLRTLLLANNRISAISQSLHLSVPNLTTLVLTNNN 99 
                 9************************************************************************************************** PP

       LRR_9 100 lqeladldPlaslkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklkereeaeklfkskkg 167
                 l el+dl+Pl ++k+l++lsl+ npv +kk yr+++ +++++lr+ldf+++++ker++ + lf +  g
  CDO70239.1 100 LAELGDLEPLKDVKSLQYLSLIGNPVREKKWYREWLAFRIPTLRVLDFQRIREKERQAGRSLFLTADG 167
                 **************************************************************988765 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.6   0.00011      0.49       8      40 ..      49      80 ..      46      86 .. 0.63
   2 !   24.8   5.3   4.7e-09   2.1e-05       2      43 ..      65     107 ..      64     108 .. 0.85
   3 !   21.9   3.0   3.6e-08   0.00016       1      33 [.      88     123 ..      88     128 .. 0.83
   4 ?   -1.8   0.0       1.1   4.8e+03       1       9 [.     140     148 ..     136     151 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                --SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4  8 LsnNqltdipl.leklpnLkeLdLsgNnlitdld 40
                + +N +t +++ +  l  L++L L  Nn+i+ ++
  CDO70239.1 49 FTDNSITVLGNiPL-LRRLRTL-LLANNRISAIS 80
                55677777777444.6666666.65666776664 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 4.7e-09
                 S--EEE--SS---E-S-...HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4   2 nLevLdLsnNqltdipl...leklpnLkeLdLsgNnlitdldeLk 43 
                 +L++L L+nN+++ i+    l + pnL++L L  Nn++  l +L+
  CDO70239.1  65 RLRTLLLANNRISAISQslhL-SVPNLTTLVL-TNNNLAELGDLE 107
                 7****************9544.5*********.666888888776 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 3.6e-08
                 SS--EEE--SS---E-S-HH..H.-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdiplle..k.lpnLkeLdLsgN 33 
                 pnL++L L nN+l +++ le  k  ++L++L+L gN
  CDO70239.1  88 PNLTTLVLTNNNLAELGDLEplKdVKSLQYLSLIGN 123
                 8***********88888866554499*******999 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.1
                 SS--EEE-- CS
       LRR_4   1 pnLevLdLs 9  
                 p L+vLd++
  CDO70239.1 140 PTLRVLDFQ 148
                 456666654 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   4.9e+03      31      40 ..      48      57 ..      47      59 .. 0.63
   2 !   30.9   5.5   3.8e-11   1.7e-07       1      60 [.      64     124 ..      64     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                E--SS---GG CS
       LRR_8 31 dLsnNllttl 40
                d ++N++t+l
  CDO70239.1 48 DFTDNSITVL 57
                5667777766 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 3.8e-11
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GG.GGGGGTT--S-.EEE--SS- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttl.spgafsgLpsLrsLdLsgNr 60 
                 ++L++L L nNr+++++++   +++nL++L L+nN+l  l + + + + +sL++L L gN+
  CDO70239.1  64 RRLRTLLLANNRISAISQSLHLSVPNLTTLVLTNNNLAELgDLEPLKDVKSLQYLSLIGNP 124
                 68***********************************99824567888899****999996 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.71   3.2e+03      13      20 ..      47      54 ..      22      59 .. 0.56
   2 ?    3.4   0.3     0.037   1.6e+02       1      20 [.      65      83 ..      65      86 .. 0.80
   3 ?    4.9   0.2     0.013        56       1      13 [.      89     104 ..      89     112 .. 0.79
   4 ?   -0.1   0.0      0.55   2.5e+03       1      11 [.     114     124 ..     114     138 .. 0.86
   5 ?   -2.5   0.0       3.3   1.5e+04       2       7 ..     142     147 ..     141     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.71
       LRR_1 13 lglppnsf 20
                +++++ns+
  CDO70239.1 47 IDFTDNSI 54
                35555554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.037
       LRR_1  1 nLrhLdLsnnpllglppnsf 20
                +Lr+L L nn++ + +++s+
  CDO70239.1 65 RLRTLLLANNRI-SAISQSL 83
                69*********9.5666665 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.013
       LRR_1   1 nLrhLdLsnnpl...l 13 
                 nL++L L+nn+l   +
  CDO70239.1  89 NLTTLVLTNNNLaelG 104
                 8**********94433 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.55
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++L L +np
  CDO70239.1 114 SLQYLSLIGNP 124
                 699***98887 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 3.3
       LRR_1   2 LrhLdL 7  
                 Lr+Ld 
  CDO70239.1 142 LRVLDF 147
                 999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1717.27
//
Query:       CDO70240.1  [L=179]
Description: hypothetical protein BN946_scf184942.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-21   75.7   2.5    2.8e-21   75.7   2.5    1.9  2  DUF4149     Domain of unknown function (DUF4149)
    0.00093   19.5   1.0     0.0012   19.2   1.0    1.2  1  DUF1772     Domain of unknown function (DUF1772)
  ------ inclusion threshold ------
      0.038   14.5   0.2      0.064   13.8   0.2    1.2  1  PY_rept_46  Plasmodium yoelii repeat (PY_rept_46)


Domain annotation for each model (and alignments):
>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   2.5   4.8e-25   2.8e-21      11     101 ..      21     117 ..      10     118 .. 0.94
   2 ?   -0.2   0.1      0.21   1.2e+03      38      86 ..     143     165 ..     131     176 .. 0.53

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 4.8e-25
     DUF4149  11 lwvtfvvapvlfrsLprhqfgelqsklFplyfglglalsvlllltevavg......seklaseellqlllllvvllltllnafylepritslkeqre 101
                 lwvtf+ + ++f++Lpr+qfg+lq++ Fp+yf+l++als+ ll + v+++        + ++ + +q+++l++v+l++++n+++++p +++++++r+
  CDO70240.1  21 LWVTFIGGTIAFKTLPRQQFGNLQHRTFPIYFVLSIALSSSLLGLWVYSHpsvlqnYLHPTQGDVAQAYALAAVVLSQAANHLIIGPLTSKTMFKRH 117
                 8*****************************************************9877788999******************************998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
     DUF4149  38 Fplyfglglalsvlllltevavgseklaseellqlllllvvllltllna 86 
                 F  + g++++                          + l+++l+ l++ 
  CDO70240.1 143 FAQLHGISSL--------------------------ANLTAFLSLLFHG 165
                 4444443333..........................3344444444444 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.0     2e-07    0.0012      25     136 ..      37     163 ..       2     164 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2e-07
     DUF1772  25 lkqwrrlfkrgkavfpp.....lallsalafayla..........araasrgarllylaaaalll.....lsivpyTllvmvPtNnkLaalkeedakek 103
                  +q+ +l    +++fp      +al s+l+ ++++          +   +   +  y++aa++l+     l i p+T   m +   kL++ + ++ +e 
  CDO70240.1  37 RQQFGNLQ---HRTFPIyfvlsIALSSSLLGLWVYshpsvlqnylH-PTQGDVAQAYALAAVVLSqaanhLIIGPLTSKTMFKRH-KLEKEEGKAYNEP 130
                 44555555...4445555554577777777776668*****99853.33333333342444446633333445555555555533.3444444444555 PP

     DUF1772 104 edeaevrellerWgrlnlvRavlalaaavlgll 136
                    ae+++l + +++l+ + +++ l+a++ +l+
  CDO70240.1 131 NVSAEMKSLNKLFAQLHGISSLANLTAFLSLLF 163
                 56699999999*****************98875 PP

>> PY_rept_46  Plasmodium yoelii repeat (PY_rept_46)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   1.1e-05     0.064       9      37 ..     112     140 ..     110     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
  PY_rept_46   9 sMFKrdKkDkDsdksqesldvdkslesld 37 
                 +MFKr+K  k   k+ ++++v   ++sl+
  CDO70240.1 112 TMFKRHKLEKEEGKAYNEPNVSAEMKSLN 140
                 8********************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1361.46
//
Query:       CDO70241.1  [L=325]
Description: hypothetical protein BN946_scf184942.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-25   88.2   0.2    7.2e-25   87.6   0.2    1.3  1  MitMem_reg  Maintenance of mitochondrial structure and functi
    1.4e-11   44.4   0.0    2.5e-11   43.6   0.0    1.3  1  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
       0.11   12.2   0.3       0.16   11.6   0.3    1.2  1  HAUS4       HAUS augmin-like complex subunit 4


Domain annotation for each model (and alignments):
>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.2   1.2e-28   7.2e-25       1     112 []     183     292 ..     183     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.2e-28
  MitMem_reg   1 Eaeeigvehllkpsiqdas..stlstglnrqyyslkilqerldlikdYlkkveegelpvnheilrnlqkllnllPhleteelekefnvetnDvllvvyL 97 
                 Eae+i+v++ +k      s  ++l ++l++q+ ++k+l +r+ l+ +Y+ +v++g ++ +h+ lr l++l+++lP  e++e+++ef +e++Dv l+ yL
  CDO70241.1 183 EAERIAVDYAAKGG----SggTSLESHLQTQRAAVKMLYDRILLLVKYVSDVIAGSATKDHATLRALSALIASLPASENKEFREEFDTEYEDVQLTAYL 277
                 9***********33....3348***************************************************************************** PP

  MitMem_reg  98 asltrsilalnelle 112
                 a+lt+s + ln+l++
  CDO70241.1 278 ATLTKSANLLNDLVD 292
                 ************985 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   4.1e-15   2.5e-11       2      97 ..      20     113 ..      19     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 4.1e-15
                 SSCEEEEEHHHHHHHHHHHHHHHHHT....S--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSS CS
         JAB   2 svqavhleslvllkildhalrtekee....eevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpd 96 
                 s+ ++ l++l +l+i++h +r + ++    + v G l+G++n++  vei+n+f+l +e++        +d+++l + +e++k++++ ++++GWY+    
  CDO70241.1  20 SGLSIALHPLPILNISEHLTRLRLQTrsrvPFVLGALLGTQNGR-DVEIVNSFELAVEDNGLI-----VDHDFLITRKEQYKQVFPSLEFIGWYTVAER 112
                 67889***************999888888899************.***********9998888.....888888999*****************87666 PP

                 S CS
         JAB  97 i 97 
                  
  CDO70241.1 113 P 113
                 5 PP

>> HAUS4  HAUS augmin-like complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.8e-05      0.16      59     137 ..     227     304 ..     203     307 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
       HAUS4  59 qpeseeeseelkaaklsrLpellkkekkrleeekeklredavllerqfaeYlqvLlqclqlLqklvkdhrLktqsdlDr 137
                   ++ + s +   a l +L++l+ +  +  e+++ + + d+   + q ++Yl +L+++ +lL+ lv +h + t s+ Dr
  CDO70241.1 227 VSDVIAGSATKDHATLRALSALIASLPA-SENKEFREEFDTEYEDVQLTAYLATLTKSANLLNDLVDKHIILTSSREDR 304
                 3346666777777888888888876544.4555555566777799************************9998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2451.51
//
Query:       CDO70242.1  [L=743]
Description: hypothetical protein BN946_scf184942.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-103  345.1   0.1   5.4e-103  342.9   0.0    1.9  2  MCM             MCM P-loop domain
      1e-33  115.8   0.0    2.6e-33  114.6   0.0    1.6  1  MCM_OB          MCM OB domain
    6.3e-29  100.2   1.0    1.5e-28   99.0   1.0    1.7  1  MCM_lid         MCM AAA-lid domain
    5.5e-16   59.0   0.2    2.5e-15   56.9   0.1    2.1  2  MCM_N           MCM N-terminal domain
    7.4e-07   28.8   0.0    0.00024   20.6   0.0    2.5  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      8e-05   22.7   0.0     0.0002   21.4   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
    0.00033   20.5   0.1     0.0021   17.9   0.0    2.4  2  AAA_3           ATPase family associated with various cellula
     0.0063   17.1   1.1      0.049   14.3   0.2    2.8  3  Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
  ------ inclusion threshold ------
      0.061   13.7   0.0       0.23   11.9   0.0    2.0  2  AAA             ATPase family associated with various cellula


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.9   0.0  2.7e-106  5.4e-103       2     224 .]     324     546 ..     323     546 .. 0.99
   2 ?   -0.5   0.0      0.28   5.6e+02       5      47 ..     620     662 ..     618     676 .. 0.83

  Alignments for each domain:
  == domain 1  score: 342.9 bits;  conditional E-value: 2.7e-106
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +ee+ e+a+++ ++e+++ks+apsiyg+ d+kkai+++l+gg+kk l+d+++lrgdinvll+gdpgtaKsqlLk+vek+ap avytsgkgssaagLta+
  CDO70242.1 324 EEEFGEMARSEGFYERFAKSVAPSIYGSLDIKKAITCLLLGGSKKILPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVAPIAVYTSGKGSSAAGLTAS 422
                 78999********************************************************************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+rd+ ++ef+le+Ga+vlad+Gv+ciDefdkm++edr+a+hEamEqqtisiaKaGi+++Ln+rtsvlaAanp++gryd+ +s  eni++++++LsrFD
  CDO70242.1 423 VQRDSVSREFYLEGGAMVLADTGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPVWGRYDEGRSPGENIDFQTTILSRFD 521
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 +if+++D+++e++D+++a+h++++h
  CDO70242.1 522 MIFIVKDEHNEQRDRMIAKHVMNIH 546
                 **********************987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.28
                 HHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBB CS
         MCM   5 ikelakekdiieklvksiapsiyghedvkkaillqlfggvkkk 47 
                 i++l++  +i e+l+k     ++ +++v +ai l  f++++  
  CDO70242.1 620 IRQLEAIIRISESLAKLTLSPVVQNHHVEEAIRLFKFSTMDAV 662
                 6777777889999*********************999988754 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   1.3e-36   2.6e-33       2     125 ..     134     276 ..     133     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.3e-36
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEE.S---..............-SB-.........TTT-HHH-EEE-GGGSEEEEEE CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvev.elee..............PrkCe.......ekeCeskdpfkletekskfvdfq 78 
                 +Rdl++++++klv+++Giv++as ++ +++k++++c++c++t+ +                   Pr C+       +k+C+  dp+ + ++ks+f+d+q
  CDO70242.1 134 FRDLTANTMNKLVRIPGIVISASVLSARATKLHLQCRACRSTKIIyP--PsglgglgggsdrglPRVCDapelenqKKDCP-LDPYLIIHSKSSFTDHQ 229
                 7***************************************9777541..134566777888899*****9***99999***.9**************** PP

                 EEEEE-------------EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  79 klklQEspeevpaGelPrslevileddlvdkvkPGdrvevtGiyral 125
                 +lklQE+p+ vp+GelPr++ + +++ l+ +v PG rv  tGiy+++
  CDO70242.1 230 TLKLQEAPDMVPVGELPRHMLLSVDRFLTGQVVPGARVIATGIYSTF 276
                 ********************************************986 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   1.0   7.8e-32   1.5e-28       2      86 ..     568     657 ..     567     658 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 7.8e-32
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH....TSS.TSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkee....eds.krksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 +++++iay+++k+ P++s ea+e+ls+++v+lRk+     +d+ +r+sipit RqLe++iR+se+lAkl+ls vv++++veeairl+k s
  CDO70242.1 568 KMKRFIAYCKAKCAPRISAEAQEMLSSHFVSLRKQVkqveQDNdERSSIPITIRQLEAIIRISESLAKLTLSPVVQNHHVEEAIRLFKFS 657
                 79********************************99888744468******************************************976 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   1.3e-18   2.5e-15       5     103 ..      34     126 ..      30     127 .. 0.87
   2 ?   -1.1   0.0       1.4   2.9e+03      41      86 ..     564     613 ..     560     643 .. 0.71

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.3e-18
       MCM_N   5 edFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykddakefpaeltrrfqvrfk 103
                  dFL ++     + +g+++Yrd+l+ ++  +++ +evdl++++ +++eLa+ai+e p e+lpl+e+a+ + ++++        +e +++  + +qv +k
  CDO70242.1  34 LDFLLQY-----RVGGDFIYRDKLRANLLLKQHQVEVDLRHVSLYNDELAHAIQERPAEILPLFESAAAKAARTILFPLSSG-SEAAQQSIPNVQVLIK 126
                 69*****.....8999********************************************************9955534433.5677888888888776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
       MCM_N  41 vdlddLaaf....deeLaeailenpkeylplleealkevvkklepsykdd 86 
                 +dld ++ f    + + a +i+ + +e+l      l++ vk++e+++ ++
  CDO70242.1 564 IDLDKMKRFiaycKAKCAPRISAEAQEMLSSHFVSLRKQVKQVEQDNDER 613
                 67777777744444488888888888888887777788887877764443 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0054        11      21      47 ..     378     404 ..     374     423 .. 0.88
   2 !   20.6   0.0   1.2e-07   0.00024      98     159 ..     435     496 ..     428     520 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0054
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllp 47 
                   G  n+ll+G pG+ K+ l k ++++ p
    CDO70242.1 378 GDINVLLLGDPGTAKSQLLKFVEKVAP 404
                   7889**************999988877 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   + G++ la +Gv+ +DE+ +++ +   ++ e +e+++++i++a  ++   +r+ ++aa+Np 
    CDO70242.1 435 EGGAMVLADTGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPV 496
                   67999*******************************************************96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     1e-07    0.0002       1     124 [.     381     497 ..     381     506 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL+G+pGt+Ks+l + + ++  +++ ++   ++ +++ l+ +++ +  +++  l+ +++v       ++++DE++++++e   + +  +e+++++++
  CDO70242.1 381 NVLLLGDPGTAKSQLLKFVEKV--APIAVYTSGKGSSAAGLTASVQRDsvSREFYLEGGAMV--LADTGVVCIDEFDKMRDEDRVAIHEAMEQQTISIA 475
                 69**************999998..67888888999999999999987674555555556666..6788899**************************99 PP

                 -SSSEEE---......-EEEEEESS-- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld 124
                 + g  +  ++      ++v+a+anp+ 
  CDO70242.1 476 KAGITTVLNSR-----TSVLAAANPVW 497
                 98888877775.....89***999975 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   4.8e+03      16      39 ..     219     242 ..     216     250 .. 0.82
   2 !   17.9   0.0   1.1e-06    0.0021       2     113 ..     382     496 ..     381     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
       AAA_3  16 vkalakaldlefkriqftpdllPs 39 
                 +++ ++  d +  ++q +pd++P 
  CDO70242.1 219 IHSKSSFTDHQTLKLQEAPDMVPV 242
                 666677888999999******995 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.1e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvf...anllladeinrappktqsalleameerqvtve..g 95 
                 vll g PG+ak +l k + k+  + +           + ++ +   ++ ++ef ++ G+++   + ++  de ++     + a+ eame+++++++  g
  CDO70242.1 382 VLLLGDPGTAKSQLLKFVEKVAPIAVYTSG--KGSSAAGLTASVQRDSVSREFYLEGGAMVladTGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAkaG 478
                 677788888888888777777665543322..22334555655566667799****99976343469*************************9987225 PP

       AAA_3  96 ethklpepflvlatqnPi 113
                  t+ l++   vla+ nP+
  CDO70242.1 479 ITTVLNSRTSVLAAANPV 496
                 6899*************8 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.3   1.1e+04      35      58 ..     450     473 ..     443     477 .. 0.81
   2 !   14.3   0.2   2.4e-05     0.049      26      91 ..     585     652 ..     565     653 .. 0.79
   3 ?   -1.0   0.0       1.4   2.8e+03      41      66 ..     695     720 ..     672     722 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.3
  Mg_chelatase_C  35 revceldeeaeelleeaierlgls 58 
                     +e+ ++++e++  ++ea+e++++s
      CDO70242.1 450 DEFDKMRDEDRVAIHEAMEQQTIS 473
                     566678889999999999999988 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.4e-05
  Mg_chelatase_C  26 naelsgeelrevceldeeaeelleeaierlg..lsaRaydrilkvArTiADLegseeieeehlaeAlq 91 
                      ae+++    ++++l+++++++ ++  er +  ++ R+++ i++++ ++A L  s  ++++h++eA++
      CDO70242.1 585 SAEAQEMLSSHFVSLRKQVKQVEQDNDERSSipITIRQLEAIIRISESLAKLTLSPVVQNHHVEEAIR 652
                     566666677778889999888888777665522799******************************97 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
  Mg_chelatase_C  41 deeaeelleeaierlglsaRaydril 66 
                     +++ ++l++e+++++g s  a++r+l
      CDO70242.1 695 STSYQSLVREFVTQQGYSSHALERTL 720
                     56778999**************9998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.3   8.7e+03      34      63 ..      77     105 ..      60     105 .. 0.75
   2 ?   11.9   0.0   0.00012      0.23       1     110 [.     382     494 ..     382     502 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
                 CSSSSTTHHHHHHHHHHHHHHHTSTSEEEE CS
         AAA  34 llskyvgesekkirelfkeakekakpsilf 63 
                 l  + ++e++++i  lf++a +ka+ +ilf
  CDO70242.1  77 LA-HAIQERPAEILPLFESAAAKAARTILF 105
                 33.678899999999999998888558887 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
                 EEEESSTTSSHHHHHHHHHHHHTHEE.EEEETTTCSSSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvef.leisgsellskyvgesekkirelfkeakeka....kpsilfiDEidalaksr....sgseseeeervvnqLl 90 
                 vll G pGt K+ l k v k + + +  + +gs+    + + + ++++  f   +  a    ++ ++ iDE+d++  ++    +   +  e+++++   
  CDO70242.1 382 VLLLGDPGTAKSQLLKFVEKVAPIAVyTSGKGSSAAGLTASVQRDSVSREFYL-EGGAmvlaDTGVVCIDEFDKMRDEDrvaiH---EAMEQQTISIAK 476
                 79******************998765356677777744455555555444432.3333667677***********666632211...222222222222 PP

                 HHHHHTTTSSSTEEEEEEES CS
         AAA  91 teldgvkkkeskvivigatn 110
                 + +  v   +s++ v++a+n
  CDO70242.1 477 AGITTVL--NSRTSVLAAAN 494
                 2222222..34555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5300.31
//
Query:       CDO70243.1  [L=114]
Description: hypothetical protein BN946_scf184942.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-20   70.9   0.4    1.1e-19   70.5   0.4    1.2  1  DUF3128   Protein of unknown function (DUF3128)


Domain annotation for each model (and alignments):
>> DUF3128  Protein of unknown function (DUF3128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.4   6.3e-24   1.1e-19       3      79 .]      31     113 ..      29     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6.3e-24
     DUF3128   3 scseafdellsCy...slggqfkqyYryGeldnCsekwedfkfClklktkksekiqeilkkrerekkakk...kssedvWelR 79 
                  c+++fd++l C+        ++++YryGe+ +C+ k edfkfC+++k +++e+ ++ + +r++e++a++   kssedvW++R
  CDO70243.1  31 GCMKLFDDFLLCNgkyPSIRLVRSLYRYGETATCKPKLEDFKFCMSVKGMHPEEKRDLWIRRRAEWWARRrmhKSSEDVWDIR 113
                 5***********83334567789**********************************************9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 798.94
//
Query:       CDO70244.1  [L=602]
Description: hypothetical protein BN946_scf184942.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4133.15
//
Query:       CDO70245.1  [L=728]
Description: hypothetical protein BN946_scf184942.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-152  507.7   0.1   3.3e-151  503.7   0.1    2.0  1  Catalase      Catalase
      9e-18   64.3   0.1    1.8e-17   63.3   0.1    1.6  1  Catalase-rel  Catalase-related immune-responsive
    1.5e-16   60.4   0.2    5.1e-16   58.7   0.2    2.0  1  Catalase_C    C-terminal domain found in long catalases
    5.6e-10   39.3   0.0      1e-09   38.4   0.0    1.4  1  DJ-1_PfpI     DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.7   0.1  7.4e-155  3.3e-151       1     380 [.      41     411 ..      41     413 .. 0.96

  Alignments for each domain:
  == domain 1  score: 503.7 bits;  conditional E-value: 7.4e-155
                 B-TTS-B-S-SSS-EEESTT...S-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS-.-TTT---GGGSSTT-EEEEEEEEE-SS--TT- CS
    Catalase   1 ttseGapvsdnqnsltager...GplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkd.isdltkakllskvgkktpvlvRfStvagekgs 95 
                 tt++G+ v+d++n l+a++    Gp+ll+d++ +ek+++fd+eripe               v++d +s++t a +l+++ + tp++vRfSt++g++gs
  CDO70245.1  41 TTDHGVFVRDTDNWLQASNGarpGPALLEDQIAREKIMRFDHERIPE---------------VYDDrASKYTYAPVLTDALRVTPTFVRFSTIQGSRGS 124
                 899************99876668***********************9...............444439******************************* PP

                 -SSSSS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB....-HHH..HHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE CS
    Catalase  96 adtaRdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk....daam..fwdflslnpeslhqvlilfsdrgipksyrhmngy 188
                 adt+RdvrGfa+kfyT+eGnwDlvgnn+pvFfi+D+ikfpd+ih++k+ep+++++    +  +  fwdf+ l+pes+h+ ++++sdr+ip+syr+m+g+
  CDO70245.1 125 ADTVRDVRGFATKFYTDEGNWDLVGNNIPVFFIQDAIKFPDIIHAVKPEPHNEVPqgqsA--HnnFWDFVGLQPESAHMAMWTMSDRAIPRSYRMMQGF 221
                 ******************************************************988533..446********************************** PP

                 --S-EEEE-TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEE CS
    Catalase 189 gvhtfklvnkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevG 287
                 gv+tf+l+n++ge+++vkfh+ ++ gv++l+++ea k+ag+dpd++++dL eai +g++p+w + +qv++e+++++++f+ilD+Tk+wpe+ vp++ +G
  CDO70245.1 222 GVNTFTLMNAAGERFFVKFHWIPELGVHSLMWDEALKIAGQDPDFHRKDLEEAIVNGAFPKWFFGIQVIPEARENDFDFDILDATKIWPEELVPVEIIG 320
                 *************************************************************************************************** PP

                 EEEEEE--S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..---S----TT-.....S-S---SS-S CS
    Catalase 288 kltLnrnpenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepns 380
                 +++Lnr++++yF evEqvaf+++++vpGi++s+D+lLqgR fsY dtq +RlGvn+qqlp+Nrp ++v n++rdGam++++  +k+ nY+pn+
  CDO70245.1 321 EMVLNRTVDEYFPEVEQVAFCTAHVVPGIGFSDDPLLQGRNFSYFDTQLSRLGVNWQQLPINRPVCPVLNHHRDGAMQHRI--TKDLNYWPNR 411
                 ******************************************************************************755..4568****97 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.1     4e-21   1.8e-17       2      63 ..     442     503 ..     441     505 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 4e-21
                   HGG--SSHHHHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHH CS
  Catalase-rel   2 edfddhfsQagllyrsmseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVae 63 
                   ++f++h+sQa+l+y+s+ + ek+++v++++fels+++d+ ++e + + ++++D +l+++Va 
    CDO70245.1 442 AKFQEHYSQAQLFYNSLADFEKAHVVSALSFELSHCDDPVVYETYTKLLNNIDFNLAKQVAI 503
                   789*********************************************************95 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.2   1.1e-19   5.1e-16       2     130 ..     538     682 ..     537     718 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.1e-19
  Catalase_C   2 glkVgiLasndseaslaqakalaaalaaegvdvtvv..........aeklgsaeg..vnrTYstadaveFDaivvadgaeslfsakataasslfpagrp 88 
                 +++++iL+   +  +l +++a++aal+a ++++ ++          +e++gs +g   ++ Y   ++++FDai++ +g++++        ++l ++gr+
  CDO70245.1 538 SRRIAILVA--DGFNLGEVEAIRAALKAGMATTWIIgprrgvvypaGEEVGSGKGysADHHYEGQRSTMFDAIIIPSGTKHA--------QALAESGRT 626
                 799*****7..678**********************3333333333366665566668999*****************5554........5799***** PP

  Catalase_C  89 lqllldayrhgKpigalGsgaealk..............aagisaeepGVyvadsa 130
                 ++ +++a+ h+KpigalG+g + l+              ++++ +++ GV++a + 
  CDO70245.1 627 IHWVREAFGHCKPIGALGEGVAFLReavqlpgvqfatnlNSNVVTTSYGVVTAGKY 682
                 **********************9996777777777766666666667777766554 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.2e-13     1e-09       1     123 [.     539     666 ..     539     695 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.2e-13
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS.......TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHH CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvd.......keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefae 92 
                 +++++l+adg++  E+ +  ++lk++  ++ ++++        +eev + +G  +++d+ ++  ++  +Da+++p G++ ++ l+e+ + +++v+e++ 
  CDO70245.1 539 RRIAILVADGFNLGEVEAIRAALKAGMATTWIIGPRrgvvypaGEEVGSGKG--YSADHHYEGQRSTMFDAIIIPSGTKHAQALAESGRTIHWVREAFG 635
                 69**********************9777777777776666665888877666..5799999999999******************************** PP

                 TT-EEEEETTTHHHHHHTTTTTTSEE--SGG CS
   DJ-1_PfpI  93 kgklvaaICagpqlLaaagvlkgrrvTsypa 123
                   k+++a++ g  +L +a  l+g + +++ +
  CDO70245.1 636 HCKPIGALGEGVAFLREAVQLPGVQFATNLN 666
                 ******************9999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5416.01
//
Query:       CDO70246.1  [L=380]
Description: hypothetical protein BN946_scf184942.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-07   28.9   0.4    9.7e-07   28.9   0.4    3.8  4  zf-C2H2      Zinc finger, C2H2 type
    6.9e-05   23.1   6.7      0.038   14.4   0.1    2.6  2  zf-H2C2_2    Zinc-finger double domain
    0.00031   21.3   8.6      0.003   18.2   0.2    3.8  4  zf-C2H2_4    C2H2-type zinc finger
  ------ inclusion threshold ------
      0.094   13.0   0.1      0.094   13.0   0.1    2.0  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
       0.22   11.5   1.0        0.6   10.1   0.1    2.1  2  DUF3889      Protein of unknown function (DUF3889)


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6   5.8e+03      13      21 ..     261     269 ..     260     273 .. 0.77
   2 !   28.9   0.4   2.7e-10   9.7e-07       1      23 []     294     316 ..     294     316 .. 0.99
   3 !    7.1   0.8    0.0024       8.4       1      11 [.     324     336 ..     324     339 .. 0.90
   4 ?   -1.1   0.3      0.89   3.2e+03       3       9 ..     358     364 ..     357     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
                 HHHHHHHHH CS
     zf-C2H2  13 ksnLkrHir 21 
                 +s++ +H++
  CDO70246.1 261 PSSMSSHMS 269
                 688999*97 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2.7e-10
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+Cp C++ F r +nLk+Hi+tH
  CDO70246.1 294 YQCPTCPRAFARAYNLKTHIQTH 316
                 9*********************9 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0024
                 EEET..TTTEEES CS
     zf-C2H2   1 ykCp..dCgksFk 11 
                 y+C+   Cg+sF+
  CDO70246.1 324 YTCHhkSCGRSFS 336
                 9***********6 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.89
                 ETTTTEE CS
     zf-C2H2   3 CpdCgks 9  
                 C+ Cg+s
  CDO70246.1 358 CDRCGRS 364
                 8888886 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.1e-05     0.038       9      25 ..     287     304 ..     264     305 .. 0.83
   2 !    9.7   3.1   0.00033       1.2       1      25 [.     308     336 ..     308     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
   zf-H2C2_2   9 Ht.gekpyeCplCdkaFk 25 
                 H  ++++y+Cp C+ aF+
  CDO70246.1 287 HDdPKRKYQCPTCPRAFA 304
                 4435567**********8 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00033
   zf-H2C2_2   1 nLrrHirkHtgek..pyeCp..lCdkaFk 25 
                 nL+ Hi +H + +  py+C   +C+ +F+
  CDO70246.1 308 NLKTHIQTHDPNRlkPYTCHhkSCGRSFS 336
                 89********776559*****99***995 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.8e+04      14      20 ..     262     268 ..     261     270 .. 0.74
   2 !   18.2   0.2   8.5e-07     0.003       1      23 [.     294     316 ..     294     317 .. 0.97
   3 ?    4.4   0.3     0.024        85       1      11 [.     324     336 ..     324     340 .. 0.86
   4 ?    2.0   0.1      0.14     5e+02       2      13 ..     357     368 ..     356     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
   zf-C2H2_4  14 kaLlrHl 20 
                 +++++H+
  CDO70246.1 262 SSMSSHM 268
                 5688998 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 8.5e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++Cp C++ F + ++L++H++th
  CDO70246.1 294 YQCPTCPRAFARAYNLKTHIQTH 316
                 89********************9 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.024
   zf-C2H2_4   1 fkCpi..CgksFs 11 
                 ++C++  Cg+sFs
  CDO70246.1 324 YTCHHksCGRSFS 336
                 79**********5 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.14
   zf-C2H2_4   2 kCpiCgksFssk 13 
                 +C+ Cg+s+  k
  CDO70246.1 357 WCDRCGRSWVGK 368
                 6******99765 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       2.7   9.6e+03      16      26 ..     263     273 ..     262     273 .. 0.78
   2 ?   13.0   0.1   2.6e-05     0.094       2      24 ..     294     316 ..     293     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                  HHHCCTTSHHH CS
  zf-C2H2_jaz  16 aldnHlkSKkH 26 
                  ++  H+++ +H
   CDO70246.1 263 SMSSHMSGVSH 273
                  5678*999888 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.6e-05
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C++C + F  +++l++H+ ++
   CDO70246.1 294 YQCPTCPRAFARAYNLKTHIQTH 316
                  56******************986 PP

>> DUF3889  Protein of unknown function (DUF3889)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.74   2.6e+03      12      41 ..       4      33 ..       1      42 [. 0.76
   2 ?   10.1   0.1   0.00017       0.6      26      56 ..     224     254 ..     209     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.74
                SSS-TT-----SSTTHHHHHHHHT-TT-EE CS
     DUF3889 12 aaaavaepayakwerlAvketkkkYpgaev 41
                ++ a++ p+ a +e  A++++ +  p a v
  CDO70246.1  4 PTFAQFYPQSAAFEPAAYHKVDSAAPAATV 33
                555677788888888888888887777776 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
                 THHHHHHHHT-TT-EE---EEEEEEE-SS-E CS
     DUF3889  26 rlAvketkkkYpgaevvdyqyvGrtkkedet 56 
                 rlA +++ + Yp+a+v   +y G + ++++ 
  CDO70246.1 224 RLASSAASDYYPQAQVHINKYTGARVVQQQH 254
                 99*********************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2644.11
//
Query:       CDO70247.1  [L=548]
Description: hypothetical protein BN946_scf184942.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-88  296.7   2.2    4.6e-88  296.4   2.2    1.0  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.4   2.2   2.6e-92   4.6e-88       6     416 ..      80     492 ..      75     495 .. 0.89

  Alignments for each domain:
  == domain 1  score: 296.4 bits;  conditional E-value: 2.6e-92
                    T-SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-E CS
  Peptidase_S10   6 tvnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSy 101
                    t+ + q sGY d +  +++sl++wf+ +++n+e++pl+lWLnGGPG+sS++Gl++E+GP+r+++ds +++ +npysWn+v+n+l+ldqPvGvGFS 
     CDO70247.1  80 TPGVYQASGYGDLT--DNESLWFWFFAARNNSESAPLTLWLNGGPGSSSMIGLFQENGPCRITNDS-SSVTLNPYSWNNVSNMLYLDQPVGVGFSH 172
                    577889********..89*********************************************886.***************************** PP

                    ETTSSGS--SHHHHHHHHHHHHHHHHHH..STCGTTSEEEEEEETTHHHHHHHH..HHHHHTHCCH--S.....STSEEEEEEEESE-SBHHHHHC CS
  Peptidase_S10 102 sntksdvktddeevaedlyefLkkffek..fpeyksrdfyitGESYaGhyvPal..akeilkknkkekk.....kkinLkGlligNglideaeqvn 188
                     +tk       +e+aed+++fL+ f++   f +y + df +++ESY  ++   l   + il++n   ++     ++inLk l ig+gl+d+  q++
     CDO70247.1 173 GETKVG---TSQEAAEDVWKFLQMFLADskFAKYSKADFALWTESYVTMVLQSLrcQSYILDQNAGIANgtvngTTINLKFLGIGDGLTDPLAQYP 265
                    *****9...7999*************7555*******************9998843588*****9999899999********************** PP

                    CHHHHHH...HTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHH CS
  Peptidase_S10 189 syvefay...ehgliseeeyeslkkacekkeeleqesekcanllekaskvavekenkglnvynileeccklkaelkksstdaqggedpydesyvek 281
                     y+++a    +h l+s++ +es+++  e +  +++ +++c+n   +  + ++++  +g+    +l ++        ++ +  +++ dpy   +++ 
     CDO70247.1 266 GYLSYAAsnpYHPLVSQTVIESVTHDWERSGGCKDLITQCYNGGTDDVCSNAQDFCNGVVLNTLLGPY--------DPYYILSQTPDPYP-PDLTP 352
                    *99965422289*********************************99998777666677777777777........44455666666665.5789* PP

                    HHTSHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEETT CS
  Peptidase_S10 282 ylnkkeVrkalhvnasvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevspkk 374
                    yln+ + +k+++++     w++ nd+v   f+ +  d++++++++le+++++++r +iy Gd+D+i n+ g ea++ +l+ +++++f++++  + +
     CDO70247.1 353 YLNSTSLMKKIGAE---SAWQMTNDDVyfnFAGT-GDWMRNSRPLLEKVINASVRTIIYDGDADYILNFNGVEAMVAALQTKISDDFAKQQFANFS 444
                    ************74...79********9644444.46669******************************************************** PP

                    TCESEEEEEEEETTEEEEEETT--SSHHHHS......HHHHHHHHHHH CS
  Peptidase_S10 375 engqvaGyvkeyenltfltvkgaGHmvPedk......peealqllerf 416
                    ++gq aG +k+ +++++++ +gaGH+vP +        ++a+q+++++
     CDO70247.1 445 VQGQSAGLYKNAGAFSYVRFFGAGHEVPAYThgtlavGQAAFQMFSQI 492
                    ****************************99722222235666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3743.34
//
Query:       CDO70248.1  [L=531]
Description: hypothetical protein BN946_scf184942.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-73  247.6  26.3    3.4e-39  134.8   6.8    2.5  3  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   6.8   1.9e-43   3.4e-39      15     187 ..       1     193 [.       1     199 [. 0.92
   2 !  123.3   6.2   6.2e-40   1.1e-35     196     351 ..     250     415 ..     230     419 .. 0.88
   3 ?   -2.7   0.2      0.12   2.2e+03     252     271 ..     504     523 ..     470     528 .. 0.55

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 1.9e-43
       Nramp  15 LlwvlllstllaillqelsarLGlvTgkglaelirerl..........pkkvsillwilaelaiiatdlaeviGaAialnllf.gipllvgvlitavlv 102
                 +l v+ll+ l a++lq+l+ +LG vTg +la+ +r  l          +  v + l++l e+ai+ tdlae++G+Ai+l l+f  ipl+++vlita +v
  CDO70248.1   1 MLFVILLAGLGAMVLQSLAFKLGCVTGLDLASHCRVLLhdrprytrliRFGVLYPLYALSEVAIVSTDLAELLGSAIGLCLVFpSIPLWAAVLITASDV 99 
                 799********************************9998888888777778888999**************************99************** PP

       Nramp 103 llllfle..kgg....yrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpg....keslllavgilGatvmphnlflhsslvqerk 187
                 l++l++   ++g    ++ +E +++alv+++ ++Fi+ l+ v pdwg+ + g++ Ps       +++l++avgilGatvmph+lfl s+l  + +
  CDO70248.1 100 LIFLVIGdpSRGhgrpVKLFEYAVMALVAAVFICFIVLLARVGPDWGQTFLGFI-PSKGLfqtqPDALYTAVGILGATVMPHALFLGSYLATQDR 193
                 *****96553332445899*********************************99.*98888889*************************987765 PP

  == domain 2  score: 123.3 bits;  conditional E-value: 6.2e-40
       Nramp 196 e..ealkyeriDtiial.ivaflinlailivaAavlysggkdv....esledaaeaLepllGskaa.....svlFaigLlaaGlsStitgtlagqyvme 282
                     +l++  +D+i++l +va  in+ail++a av+++ g +     + l+da+++++ ++G   +     +++Fa++Ll aG+ ++it+tlagq+v e
  CDO70248.1 250 FvrAHLSHGLVDVIVSLlAVAVPINSAILVIASAVFFKDGSSApampAGLFDAHDLIKRHIGA-GTflhsaAFIFALALLCAGQTASITATLAGQIVSE 347
                 2556789999******9899999**************66555556779***********9995.3334444**************************** PP

       Nramp 283 gflglrislwlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklM 351
                 gf+++r+s+ lrr+itr++ ++p ++v++++g ++   +llv+sqv+l+++lPf+++pl+lltssk++M
  CDO70248.1 348 GFIEWRVSPFLRRIITRLIGLIPSMVVAIAVGRSGI-DTLLVASQVVLAIVLPFVAAPLILLTSSKSVM 415
                 ************************************.******************************** PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.12
       Nramp 252 kaasvlFaigLlaaGlsSti 271
                 +  s++ ++ +laa + +++
  CDO70248.1 504 TSISAVIFLVILAANVYAIV 523
                 33333333444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3850.62
//
Query:       CDO70249.1  [L=282]
Description: hypothetical protein BN946_scf184942.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-38  132.1   0.0    1.6e-38  131.5   0.0    1.2  1  Med6      MED6 mediator sub complex component


Domain annotation for each model (and alignments):
>> Med6  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0     9e-43   1.6e-38      13     129 ..       8     127 ..       4     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 9e-43
        Med6  13 gLtennvldYFaespFydktsnNevlkmqrqfnqaaeeal...LkkmkGleyvlahvqepdlfvirkqerksatevtvlaaYyiiggniYqapslysvv 108
                 +Lt +n+++YF++s Fydk+snN+vl+mq++++  +  +    Lk+++G+e+ l+h+++p+lf+i+k+er s++ev++la+Y+i+++ iYq+p++y++v
  CDO70249.1   8 PLTAENAFEYFTTSMFYDKQSNNQVLRMQTMHTGVPLVNEaeeLKRFTGIEFALVHADPPSLFIIHKRERLSPDEVRPLAVYFILNNRIYQSPDVYTLV 106
                 7999***************************999876554567******************************************************** PP

        Med6 109 qsrllsalsslskalkelssl 129
                 ++rll++l+sl+k+l++l+s 
  CDO70249.1 107 SNRLLTSLYSLQKSLDTLRSH 127
                 *****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1975.44
//
Query:       CDO70250.1  [L=208]
Description: hypothetical protein BN946_scf184942.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-40  137.6   0.2    1.1e-39  135.6   0.2    1.7  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.2   6.1e-44   1.1e-39       8     139 ..      19     163 ..      17     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 6.1e-44
                     E-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS..............-SEEEETT.....EEEEEEEETTEEEEEEEETTS-HHHHHHH CS
  Clat_adaptor_s   8 lnkkgkvrlakfytavddkkkqklieevyelvsaRdskl..............sniveled.....lkviYkryasLYFvvivdeqeneliilel 83 
                     +n  g +rl+kfy ++ ++  q l+e++ +lvs+R++ l                    +d     l+v+Y++ya+LYFv++vd+ e+el il+l
      CDO70250.1  19 VNTSGVPRLTKFYSPIAHS-AQTLVEKIFSLVSSRQPGLcnfldapeletflkP-----KDgdgekLRVVYRNYATLYFVFVVDHAESELGILDL 107
                     6889***********9876.5789***********9999666777666444332.....33334459**************************** PP

                     HHHHHHHHHHHCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHH CS
  Clat_adaptor_s  84 ihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlkrvelld 139
                     i++fvesLd  f+nVceldlvf f++ + il+E+++gG +let+++e+ ++v+++ 
      CDO70250.1 108 IQVFVESLDSAFENVCELDLVFHFDEAHHILAEVIQGGLVLETNVNEIDRAVQEAA 163
                     ************************************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.53
# Mc/sec: 1189.98
//
Query:       CDO70251.1  [L=401]
Description: hypothetical protein BN946_scf184942.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-28   97.5   2.1    6.1e-28   97.3   0.1    1.9  2  EHN            Epoxide hydrolase N terminus
    3.8e-06   26.7   0.2    6.9e-06   25.9   0.2    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.11   11.7   0.1       0.19   11.0   0.1    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
       0.42   11.2   4.8        1.7    9.2   4.8    2.1  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.1   1.4e-31   6.1e-28       2     101 ..       9     111 ..       8     116 .. 0.91
   2 ?   -1.1   0.2      0.52   2.3e+03      44      62 ..     270     288 ..     232     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.4e-31
         EHN   2 rpfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearlnsfpqfkteid.....gldihFihlrsakpdaiPl 95 
                 +pf++svp++++d l+k+l+l r+p+e +++   w++Gv+++ +k+l+++Wk+++dWr++ea++n++p f+ +i+     +l+ih++h++s+ ++aiPl
  CDO70251.1   9 QPFTLSVPDSDIDFLHKKLDLVRFPDELENA--GWDYGVPLSDVKRLVEHWKTKFDWRKAEAEINKLPMFTRDIEvedhgSLNIHYVHQKSEVQNAIPL 105
                 69***********************987776..5*9*************************************95344444**********99****** PP

         EHN  96 lllhGW 101
                 l++hG 
  CDO70251.1 106 LFVHGC 111
                 ****96 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.52
         EHN  44 elkelldyWkeeydWraee 62 
                 ++ e l  W+++y W + e
  CDO70251.1 270 WIYEKLIGWADNYPWTNDE 288
                 5556666799****99866 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   1.5e-09   6.9e-06       2     114 ..     104     211 ..     103     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.5e-09
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.GG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.pe 96 
                    +l+++hG ++s+ v   r +a  L++  f+v++l l+G+g+S++++    + +    +a+ +++++ +lg ++    G+++G  +++++   y  +
     CDO70251.1 104 PLLFVHG-CKSHLVCLVRVVAVVLNHPSFHVVALSLPGFGFSEAPKK---SGFAGRQYAELFNKLMLSLGYQEY---GGDWGHNLGFHAVTHYgHK 192
                    7899997.677888899999999**99*******************9...8999999*****************...*****************99 PP

                    GEEEEEEESE.CSSCCHHH CS
  Abhydrolase_1  97 rVkalvllga.idpaasli 114
                    ++ka  + g+ + p+  ++
     CDO70251.1 193 HIKAWHTNGPlCRPPTLFS 211
                    *****99999855554444 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.2e-05      0.19       7      47 ..     105     151 ..     100     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.2e-05
  Hydrolase_4   7 vvlvHGlaehsgryae.laeaLaaqGfavyalDhrGhGrse.....g 47 
                  +++vHG  +h     + +a  L++  f+v+al   G+G se     g
   CDO70251.1 105 LLFVHGCKSHLVCLVRvVAVVLNHPSFHVVALSLPGFGFSEapkksG 151
                  689*********999978999*******************9754441 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.8   0.00039       1.7       1      61 [.     105     165 ..     105     379 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00039
                    EEEE--GC.....G.CHHHHHHHHCCT.CEEEEE--TTSTS-GGCS.--HHHCHHHHHHHCCTT CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaag.vhvlapDlpGhGrsdppp.ldledladlaalldela 61 
                    +l++HG  + ++   lv+ +a  l++  +hv+a++lpG+G+s+ p   +++  +++a+l ++l 
     CDO70251.1 105 LLFVHG--CKSHLVcLVRVVAVVLNHPsFHVVALSLPGFGFSEAPKkSGFAG-RQYAELFNKLM 165
                    799999..643333446677666677779***********664444366666.77777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2965.78
//
Query:       CDO70252.1  [L=268]
Description: hypothetical protein BN946_scf184942.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2143.23
//
Query:       CDO70253.1  [L=248]
Description: hypothetical protein BN946_scf184942.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-05   24.5  16.9     0.0035   17.8   6.6    3.2  2  CBM_5_12    Carbohydrate binding domain
     0.0072   16.2  12.0      0.013   15.4   3.4    2.4  2  CBM_5_12_2  Cellulose-binding domain


Domain annotation for each model (and alignments):
>> CBM_5_12  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   2.6   7.2e-05      0.65       1      15 [.     115     129 ..     115     138 .. 0.78
   2 !   17.8   6.6   3.9e-07    0.0035       3      25 .]     193     214 ..     192     214 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.2e-05
    CBM_5_12   1 ynGkaYqAkwwtqgg 15 
                 ynG +++Akw++ + 
  CDO70253.1 115 YNGYIWEAKWYASST 129
                 9**********9986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.9e-07
    CBM_5_12   3 GkaYqAkwwtqggqPattangpW 25 
                 G+++ Akwwtqg++P++ a+ +W
  CDO70253.1 193 GHLWTAKWWTQGDTPGGQAG-VW 214
                 89***************997.98 PP

>> CBM_5_12_2  Cellulose-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.4   1.5e-06     0.013      29      62 .]     110     145 ..      91     145 .. 0.78
   2 !    5.7   1.4    0.0016        14      35      61 ..     192     220 ..     189     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-06
  CBM_5_12_2  29 gDqmvYqgtlYeanWytnsvPGsDa..sWtslgsCa 62 
                   q++Y+g ++ea Wy +s P  D+   W+ +++Ca
  CDO70253.1 110 STQVSYNGYIWEAKWYASSTPTNDPngDWMPISACA 145
                 45899******************9733699999995 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0016
  CBM_5_12_2  35 qgtlYeanWytns.vPGsDa.sWtslgsC 61 
                 +g+l++a W+t+   PG  a  Wt  g+C
  CDO70253.1 192 SGHLWTAKWWTQGdTPGGQAgVWTDDGAC 220
                 6899*******854898776269999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1938.07
//
Query:       CDO70254.1  [L=147]
Description: hypothetical protein BN946_scf184942.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-05   23.4   0.1    4.2e-05   23.4   0.1    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.4e-09   4.2e-05       2      98 ..       7     128 ..       6     147 .] 0.72

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.4e-09
                     EEEEEEGGGGGSS.G....C.......SHTTTESEEEEEEEEEEETTTEEEESSTTHH.................HHHHHHHHHHHHTSTT-EEE CS
                     xxxxxxxxxxxxx.x....x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygn.n....y.......lpsaklthiiyaFakidgengkvvvsdwedl.................gnfeqlkklkkkknpgvkvl 67 
                     v++Y+++++  +  +    y        + +++++i +aF++ +  +g+  v d +++                 ++   ++++ + +++g+ + 
      CDO70254.1   7 VAIYWGQNSYGAThSdvanYqktlsfyCQDDAIDVIPIAFINKFYGTGNAPVLDLANVticnttmdstfsgtgllNCAFLASDIQTCQSKGKVLT 101
                     57899776655443355442555455577*************999666666666333346677777677777665444478888877777***** PP

                     EEEEETTTTTHHHHHHTSHHHHHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  68 lsiGGwtdssgfslaastdasrkkfadsvvs 98 
                     ls+GG+++s gf++      ++++fad++++
      CDO70254.1 102 LSLGGGGASVGFQSD----SQAEAFADTIWN 128
                     ********9999866....5789******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1050.76
//
Query:       CDO70255.1  [L=339]
Description: hypothetical protein BN946_scf184942.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-62  211.0   0.0    2.4e-62  210.7   0.0    1.1  1  Pkinase         Protein kinase domain
    1.4e-19   70.4   0.0      2e-19   69.9   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-05   25.4   1.0    0.00014   21.8   0.2    2.6  3  APH             Phosphotransferase enzyme family
     0.0063   15.3   0.0       0.01   14.6   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.027   13.8   0.1      0.047   13.0   0.1    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.046   13.3   0.0      0.089   12.4   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.0     8e-66   2.4e-62       1     264 []      40     321 ..      40     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 8e-66
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE..EEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdely..lvleyveggeladllerkgsls 96 
                 ye ++k+G+G++++V+++++  ++++  +K++k  k+kk k     rEikil++l   pniv l++v++++++ +  l++eyv++ +++ l+ r   ++
  CDO70255.1  40 YEIVRKVGRGKYSEVFEGINIVSDEKCIIKVLKPVKKKKIK-----REIKILQNLAgGPNIVALLDVVRDPSSKIpsLITEYVNNVDFKVLYPR---FT 130
                 7899*****************************99988855.....7***********************7776667**********9999986...** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 + +++++++++l++l+y+Hskgi+HrD+Kp+N++id e+++l+++D+Gla+ ++ ++ ++ +v+++++  PE+l + +ey+ + D+Ws+G++++++   
  CDO70255.1 131 DFDVRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDhERRKLRLIDWGLAEFYHAGTGYNVRVASRYFKGPELLvDFQEYDYSLDMWSYGCMFASM--- 226
                 ************************************88888*********************************888*******************... PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCT.......SHH...HHHTTS..............................-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilg.......etkeklpeasei..............................seeakdllkkllkkdpkkRlta 255
                 +p f+   g++    ++dql+ki+k+lg               +++i                              s+ea+dll++ll++d+++Rlta
  CDO70255.1 227 EPFFH---GHD----NYDQLVKITKVLGteglyqyI------DKYDIaldpqydellgnypkkawarfttsenqryiSNEAIDLLDRLLRYDHQERLTA 312
                 55555...433....789999999999954333331......33333666677889******************************************* PP

                 HHHHTSGGG CS
     Pkinase 256 eellqhpyl 264
                 +e+ +hpy+
  CDO70255.1 313 REAQAHPYF 321
                 ********8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   6.8e-23     2e-19       3     210 ..      42     240 ..      40     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 6.8e-23
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkkek 97 
                  + +k+G+G++++V+eg        +++k+++K+lk  +++    ++ +e+ki+++l   pniv+ll v+   +++   ++teyv++ d++     +  
   CDO70255.1  42 IVRKVGRGKYSEVFEGINI----VSDEKCIIKVLKPVKKK----KIKREIKILQNLaGGPNIVALLDVVRdpSSKIPSLITEYVNNVDFKVL-YPR-- 128
                  6799*************99....88999******776555....599*********99************76566689**********9754.443.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGv 193
                    +t  d+  +++++ k+++y +sk ++Hrd+   Nv++++++ + ++ D GLa+  +    y+++  +     +  pE l + + +  + D+Ws+G 
   CDO70255.1 129 --FTDFDVRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHERrKLRLIDWGLAEFYHAGTGYNVRVAS---RYFKGPELLVDFQeYDYSLDMWSYGC 221
                  ..6777888899***************************986549**********99555555444433...34569**987755499999******9 PP

                  HH..HHHHTTSSGTTTTSH CS
  Pkinase_Tyr 194 ll..wEiftlgespypglk 210
                  +   +E f +g++ y +l 
   CDO70255.1 222 MFasMEPFFHGHDNYDQLV 240
                  8633688888999988874 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.1     3e+02      23      60 ..      66     101 ..      43     128 .. 0.72
   2 !   21.8   0.2   4.8e-08   0.00014     165     197 ..     150     181 ..     123     187 .. 0.83
   3 ?   -1.9   0.1      0.86   2.6e+03     124     155 ..     285     317 ..     256     330 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
                 EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTT CS
         APH  23 yvlrrnpparaaeeirrevallrlLakagvpvPevlag 60 
                  + ++  p   + +i re ++l++La+ +  + ++l+ 
  CDO70255.1  66 CIIKVLKPV-KKKKIKREIKILQNLAGGP-NIVALLDV 101
                 566777788.899*************883.35555554 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 4.8e-08
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +++++H+D +p+N+++d +  ++  +iD+++a 
  CDO70255.1 150 SKGIMHRDVKPHNVMIDHERRKL-RLIDWGLAE 181
                 689**************666666.8*****996 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.86
                 CHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHH CS
         APH 124 ellrqlesatarllaselld.lleeleeqvlaa 155
                 e++r++ +++ +ll+++l+   +e+l+++ ++a
  CDO70255.1 285 ENQRYISNEAIDLLDRLLRYdHQERLTAREAQA 317
                 344555555556666666665555555554444 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.5e-06      0.01     323     364 ..     149     185 ..     138     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.5e-06
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsd 364
                     +  +gi+HrD+  +N++i     +++rk  LiD  la  ++ 
      CDO70255.1 149 H-SKGIMHRDVKPHNVMID----HERRKLRLIDWGLAEFYHA 185
                     5.89**************9....5688999999999887764 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.6e-05     0.047     134     166 ..     148     177 ..      93     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
         Kdo 134 lhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  h+ g++H+d+ ++n++++ e    +++ liD 
  CDO70255.1 148 CHSKGIMHRDVKPHNVMIDHER---RKLRLIDW 177
                 6******************998...99999995 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05     0.089     148     174 ..     154     180 ..     125     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                     E-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 148 cHnDlqegNillnkeekklvlIDFEYa 174
                      H D+ ++N++ ++e++kl lID+  a
      CDO70255.1 154 MHRDVKPHNVMIDHERRKLRLIDWGLA 180
                     59**********************666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2274.14
//
Query:       CDO70256.1  [L=483]
Description: hypothetical protein BN946_scf184942.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-39  133.0   0.0    1.2e-38  132.6   0.0    1.2  1  DnaJ_C         DnaJ C terminal domain
    8.4e-24   83.5   3.5    1.3e-23   82.9   3.5    1.3  1  DnaJ           DnaJ domain
    5.6e-11   42.7  15.4    5.6e-11   42.7  15.4    1.9  2  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
       0.13   12.3  18.2       0.69    9.9   4.0    3.0  2  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   2.6e-42   1.2e-38       1     148 []     172     389 ..     172     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 2.6e-42
                 EEEEEEE-HHHHHH-.EEE.EEEE........................................................................TEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................xxxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi.................................................................kkekktl 34 
                 ie+++ +s+ e++kG++++++i+  v+                                                                 ++ kkt+
  CDO70256.1 172 IETTVGVSFMEACKGTSRNVTIRPIVKcdtcsgtglkpgaqrstcnacdgsgmrsyvvqngfhmsticnkcqgtgtvvppgsqcstcagvgqVRVKKTV 270
                 78999*****************8777799**************************************************************8777779* PP

                 EEEE-TT--TT-EEEETT-SS..SS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S- CS
                 xxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
      DnaJ_C  35 evkipaGikdgqkirlegeGd..eeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGm 127
                 +v+ipaG++dg  ++++g+Gd   +g g+pGDl+v+i+v+p+++Fkr+g++ly+ev+i++ +allGg+++vptldg+v++++   tqpge ++++g G+
  CDO70256.1 271 KVDIPAGVEDGVALKIPGQGDapVSGtGRPGDLLVRINVAPSKTFKRQGSHLYHEVRIPVHTALLGGRVRVPTLDGEVDVRVpsgTQPGEQMVLRGHGV 369
                 *********************985557************************************************************************ PP

                 EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 128 pklkkpgkrGdlyvevkvefP 148
                      ++++Gdlyv+++v++P
  CDO70256.1 370 APAY-QNNKGDLYVTFNVQLP 389
                 8885.9*************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   3.5   2.8e-27   1.3e-23       1      63 []      34      95 ..      34      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 2.8e-27
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                d+Y++Lgv++da+ +eIkk Y  la+kyHPD n  d++a+ekF ei+eAy++L+d++kR++YD
  CDO70256.1 34 DPYQVLGVKRDATPAEIKKTYFALARKYHPDTN-PDKDAREKFVEIQEAYDILKDEKKRAEYD 95
                78*******************************.8889************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.4   6.1e+03      19      23 ..     183     187 ..     159     194 .. 0.58
   2 !   42.7  15.4   1.2e-14   5.6e-11       1      66 [.     199     261 ..     199     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
  DnaJ_CXXCXGXG  19 tCkGs 23 
                    +CkG+
     CDO70256.1 183 ACKGT 187
                    33333 PP

  == domain 2  score: 42.7 bits;  conditional E-value: 1.2e-14
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqktlgp.fvqqsqstCpeCeGtGkvikekdkCkkCkGk 66 
                    C++C+G+g k+g+ ++tC++C+GsG+ +     +++ f+  +++ C++C+GtG+v+ + ++C++C G 
     CDO70256.1 199 CDTCSGTGLKPGAqRSTCNACDGSGMRSYV---VQNgFH--MSTICNKCQGTGTVVPPGSQCSTCAGV 261
                    **********9665999********53322...233233..5789*********************97 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.3   0.00069       3.1      11      41 ..     197     224 ..     196     228 .. 0.86
   2 ?    9.9   4.0   0.00015      0.69      11      42 ..     237     264 ..     232     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00069
                 EE-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgl 41 
                 +kCd+C g+G  +++ +r    C +C G g+
  CDO70256.1 197 VKCDTCSGTGLKPGA-QR--STCNACDGSGM 224
                 59*************.44..4799****986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00015
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                 t C++C+g+G + p     + +C  C G+g +
  CDO70256.1 237 TICNKCQGTGTVVPP----GSQCSTCAGVGQV 264
                 78***********99....789******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3455.36
//
Query:       CDO70257.1  [L=570]
Description: hypothetical protein BN946_scf184942.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-39  134.0  46.1      2e-37  128.9  46.1    2.2  1  MFS_1     Major Facilitator Superfamily
    8.4e-09   34.8   9.1    8.4e-09   34.8   9.1    2.8  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.15   12.4   5.5      0.067   13.5   2.1    2.3  2  CclA_1    Putative cyclic bacteriocin


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9  46.1   3.4e-41     2e-37       2     352 ..      13     424 ..      12     425 .. 0.89

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 3.4e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +l++fl++++++i++++lp +++++++++ +e+ ++ ++y+l++ ++++++G lsd +Gr  vl  ++++fa+g++l+  a+s+ +l+++r+++G+g+g
  CDO70257.1  13 ALTLFLATTDATIVSTTLP-TITSEFHANQAEYTWVSVTYMLTQTAFQPLYGKLSDLIGRTMVLYGSIAIFAAGSVLCGCAQSIEWLIIARAIAGVGGG 110
                 789****************.******************************************************55555336666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 ++++++ +++++++  +++++    ls++++++a+ gpllgg+++++ g   Wr++fy++ +++++afv   l+l  +++  +r+s++  +        
  CDO70257.1 111 GIVSLVWTITSEIVDSRNQAKWSQALSLTWACSAVAGPLLGGIFSEQRGplnWRWAFYMNLPICAVAFVT--LWLSLNHVFVGRSSDVSWRsfgrtfdf 207
                 *********************************************99999*****************885..77766666666666655556788888* PP

       MFS_1 189 ................................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlg 239
                                                                 ++t++ +l+p   + ++d+ + i l++ +l  f+f++ +++l ly+q v g
  CDO70257.1 208 vglllfmggsccivigfnfatqlgwtcastltlivigilvlvagafyeVRTKRDALFP--PIAFRDRTIVITLATTFLHNFAFNAGTFYLALYFQAVNG 304
                 ***********************************************98999999999..7777777665688888888999999************** PP

       MFS_1 240 lsglllaglllallalvgail....allagrls.drlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfvfpsllalasdlap 330
                 ls  ++ag+++  ++l++  +    a l+g+++ +r    ++ +l++++l+l+++g+ l+ +    ss +   l+ +++G glg+ f +   + ++ + 
  CDO70257.1 305 LS-PIQAGITMLPYSLGSSLAsmptAWLIGYWAkRRCDTACQKWLICAGLALSSVGFGLMMLMsehSSRAQQTLFPLIAGAGLGMLFHAPYQVFTRALR 402
                 **.6888877777777776665566888888886668889***********************666666666669999********************* PP

       MFS_1 331 peeagtasglfntagslggalg 352
                 ++e ++ +++f +++  g+ +g
  CDO70257.1 403 RQEVASGTSAFFLVRFTGATVG 424
                 ***************9999987 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   9.1   1.4e-12   8.4e-09      42     187 ..      38     180 ..      11     187 .. 0.86
   2 ?   -3.7   4.4      0.68   4.1e+03     347     409 ..     238     295 ..     199     319 .. 0.55
   3 ?   -3.0   3.3       0.4   2.4e+03      48     117 ..     310     387 ..     272     393 .. 0.42

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.4e-12
                 HH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHH CS
    Sugar_tr  42 eessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalv 140
                  + +  ++++   +++ +++ + + g+l+d +GR  +l  ++++f +g+vl+++a+   s+e li++R ++G+g G++  lv + +sEi   +   +  
  CDO70257.1  38 HANQAEYTWVSVTYMLTQTAFQPLYGKLSDLIGRTMVLYGSIAIFAAGSVLCGCAQ---SIEWLIIARAIAGVGGGGIVSLVWTITSEIVDSRNQAKWS 133
                 3356678999999*******************************************...*******************************999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHH CS
    Sugar_tr 141 slyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllil 187
                     l ++   + +  +g ++++ ++   wr+ ++++l +  + ++ 
  CDO70257.1 134 QALSLTWACSAVAGPLLGGIFSEQRGPLNWRWAFYMNLPICAVAFVT 180
                 99999999999999999999988888899999999998765333333 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.68
                 ..CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHT.TTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 347 aasivaivfialfialfalgwgpvpwvlvsElfpq.svRskalaiavavnwlanflisllfpii 409
                    iv+ +++++  a++++            lfp+ ++R+ ++ i+ a+ +l nf+ +  + ++
  CDO70257.1 238 LTLIVIGILVLVAGAFYEV------RTKRDALFPPiAFRDRTIVITLATTFLHNFAFNAGTFYL 295
                 3333333333333344442......122233444327888888888888888888877766555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.4
                 HHHHHHTHHHHHHHHHHHHHHHH........HHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllg........drfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvG 117
                  g+++  +++G+ + s+ + +l+        d+   k+ + ++ +l+++g  l+++  + +s  + ++  +++G g+G
  CDO70257.1 310 AGITMLPYSLGSSLASMPTAWLIgywakrrcDTACQKWLICAGLALSSVGFGLMMLMSEHSSRAQQTLFPLIAGAGLG 387
                 333333334433333332222220000111122233444555555666665555555545555555555555555555 PP

>> CclA_1  Putative cyclic bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.1   1.1e-05     0.067      18      93 ..      45     117 ..      29     124 .. 0.77
   2 ?   -3.9   0.1       2.8   1.7e+04      14      88 ..     352     363 ..     345     367 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
      CclA_1  18 igvcfafmvtqgavlelygkvswvgvtyaslynvvsaivngasimnavavvtaviagplaaaltavgrglivtlvk 93 
                   v +++m+tq a   lygk+s +      ly  ++    g+ +  +   +  +i   +a a++ vg g iv+lv 
  CDO70257.1  45 TWVSVTYMLTQTAFQPLYGKLSDLIGRTMVLYGSIAIFAAGSVLCGCAQSIEWLI---IARAIAGVGGGGIVSLVW 117
                 568899***************9766666789999876666655555444454444...6889999*******9984 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
      CclA_1  14 gaaligvcfafmvtqgavlelygkvswvgvtyaslynvvsaivngasimnavavvtaviagplaaaltavgrgli 88 
                 g al                                                                 vg gl+
  CDO70257.1 352 GLALSS---------------------------------------------------------------VGFGLM 363
                 444555...............................................................555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4189.06
//
Query:       CDO70258.1  [L=499]
Description: hypothetical protein BN946_scf184942.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-51  175.1   0.0    1.9e-51  174.7   0.0    1.1  1  Choline_kinase  Choline/ethanolamine kinase
    1.8e-13   51.0   2.7      2e-13   50.8   1.6    1.6  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   2.1e-55   1.9e-51       2     213 .]     173     409 ..     172     409 .. 0.93

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 2.1e-55
                     SSEEEEEEE-TTCTTCCHHHHHHHHHHHHH.HTTSSS-EEEEETTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH............ CS
  Choline_kinase   2 kkkvllRiygkkteelidretElvvfalls.erglgpklygifenGrieefiesrtlstedlrepeiskkiAkklaelHslel............ 83 
                     ++ vllRiyg+++ +li+r +El ++++ls ++++gp+++g+fenGr+ee+++s++l+++d+r+p+is+ i++++aelH +++            
      CDO70258.1 173 ARTVLLRIYGPSSGSLISRPRELHTLHVLSsRYHIGPRVFGTFENGRVEEYFDSTALTAADMRDPQISSWIGARMAELHGVDIdavdpdpdarvp 267
                     689************************9973689************************************************************9 PP

                     ...TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH.H....CHGG-EEEE-S--SGGGEEE........-CTT CS
  Choline_kinase  84 ..eseskespslwktmqkwllnkeaqtkakkekkkkqlklinledlekeleklekll.e....elespvvfcHnDlqegNill.......nkeek 164
                       ++  + +  + k++++w l +  +  a   +  +  ++++l+++e+e ++++ ++ +    e  sp vf+HnD+q+gN+l        +  ++
      CDO70258.1 268 dgPENARVHLGVQKNVKSW-LASAREVLALPGAPADVRTSLDLDRFEREWAMYMDWVhQqetsEGMSPRVFSHNDTQYGNLLRlrtlsegQPAHR 361
                     9877888889999******.777778888888888889999****************54555555666*************************** PP

                     EEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCSTSHEE-GGGS--HHH CS
  Choline_kinase 165 klvlIDFEYagynyrgfDlanhfiEwagdyeeeeaffkldyskypsreq 213
                     +++++DFEYa++n+++fD+anhf Ew++dy+ +++ + ld ++yp+ eq
      CDO70258.1 362 QIIVVDFEYASPNPAAFDIANHFHEWTADYHGPTP-HLLDPARYPTPEQ 409
                     *********************************99.999*****99886 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   1.6   2.2e-17     2e-13       2     234 ..     151     421 ..     150     433 .. 0.72

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.2e-17
                 EEEE--.SSCEEEEEE...ETT.--EEEEEE-TT.S-HHHHHHHHHHHHHHH.HTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHH CS
         APH   2 vrelsggasnrtylvt...tpa.gryvlrrnppa.raaeeirrevallrlLa.kagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpel 94 
                 ++ +sg + n +++v     p+ ++++lr++ p+  +  + +re++ l++L+ +  +  P+v+ + +++ +++  ++  + + ++++++       p++
  CDO70258.1 151 IQKVSGSLTNAVFFVScppVPNaRTVLLRIYGPSsGSLISRPRELHTLHVLSsRYHI-GPRVFGTFENGRVEE--YFDSTALTAADMRD-------PQI 239
                 78899999*******97774444799********9*****************55555.99***9555555555..89999999999999.......666 PP

                 HHHHHHHHCCHHCH..-STTTB-......................SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S......SS CS
         APH  95 lealgeflaalhqvd.paalpla......................dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg......el 164
                   ++g+  a+lh vd  a +p +                      ++la+ +++   l+ a a+ + s+ ld   ++e+  +a+  + ++        +
  CDO70258.1 240 SSWIGARMAELHGVDiDAVDPDPdarvpdgpenarvhlgvqknvkSWLAS-AREVLALPGAPADVRTSLDLD---RFER-EWAMYMDWVHQqetsegMS 333
                 66666666666666644444444444444554444444444333333333.222222333322334444444...5555.344444444445566999* PP

                 -EEEE-SS-SGGGEEEC.........TTEEEEE---TT-EEEECCHHHHCCHHH.CSCHCC..............CHCHHHHHHHHCS-HHH CS
         APH 165 ptvllHgDlhpgNllvd.......pddgrvtGviDfedaglgpplyDlavllrs.wtseld..............peflaallrayeqeagl 234
                 p+v+ H+D   gNll         p++ ++  v+Dfe+a++ p+++D+a +  + wt + +              pe+++++ ray+   ++
  CDO70258.1 334 PRVFSHNDTQYGNLLRLrtlsegqPAHRQI-IVVDFEYASPNPAAFDIANHF-HeWTADYHgptphlldparyptPEQRRNFYRAYL--LAY 421
                 *********************998666666.8********************.66**9998999999**999999999999999998..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3290.34
//
Query:       CDO70259.1  [L=809]
Description: hypothetical protein BN946_scf184942.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-11   41.4   2.6    9.3e-11   41.4   2.6    2.9  2  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    1.4e-06   28.1   3.8    2.6e-06   27.3   3.8    1.4  1  zf_CCCH_4  Zinc finger domain
    6.2e-06   25.9   0.9    6.2e-06   25.9   0.9    1.8  2  zf-CCCH_4  CCCH-type zinc finger
  ------ inclusion threshold ------
       0.09   13.3   0.2       0.09   13.3   0.2    1.8  2  zf-CCCH_2  RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   2.6   2.1e-14   9.3e-11       1      27 []     504     530 ..     504     530 .. 0.97
   2 ?   -1.3   4.1       0.5   2.2e+03      20      25 ..     549     554 ..     542     556 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.1e-14
                 -HCHCBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHgq 27 
                 yktelCr + + G+C+yG++C+FaHg+
  CDO70259.1 504 YKTELCRSWEEKGSCRYGAKCQFAHGE 530
                 9************************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
                 G-SSBS CS
     zf-CCCH  20 rCkFaH 25 
                 rC+F+H
  CDO70259.1 549 RCCFIH 554
                 588888 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   3.8   5.7e-10   2.6e-06       1      19 []     509     528 ..     509     528 .. 0.99

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 5.7e-10
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 C+ + + G+C++G+kC+FaH
  CDO70259.1 509 CRSWEEkGSCRYGAKCQFAH 528
                 ******************** PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.9   1.4e-09   6.2e-06       2      21 ..     508     528 ..     507     529 .. 0.95
   2 ?   -4.1   2.0       3.6   1.6e+04       5      20 ..     541     553 ..     540     554 .. 0.56

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.4e-09
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFsH 21 
                 lC+++  kGsCr+G +C F+H
  CDO70259.1 508 LCRSWEeKGSCRYGAKCQFAH 528
                 8******************** PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.6
   zf-CCCH_4   5 yfakGsCrfGdnCrFs 20 
                 ++ +++Cr   +C F 
  CDO70259.1 541 KYKTEICR---RCCFI 553
                 56666676...45555 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     2e-05      0.09       2      18 .]     509     529 ..     508     529 .. 0.91
   2 ?   -6.1   2.8         4   1.8e+04      12      17 ..     549     554 ..     549     554 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
   zf-CCCH_2   2 Crffpn...C.tnpkCpFaHP 18 
                 Cr +     C +++kC FaH+
  CDO70259.1 509 CRSWEEkgsCrYGAKCQFAHG 529
                 999999999***********6 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 4
   zf-CCCH_2  12 kCpFaH 17 
                 +C F+H
  CDO70259.1 549 RCCFIH 554
                 599999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 5174.12
//
Query:       CDO70260.1  [L=1922]
Description: hypothetical protein BN946_scf184942.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-176  588.1   0.0   2.8e-176  587.2   0.0    1.4  1  BLM10_mid  Proteasome-substrate-size regulator, mid region
    2.1e-26   91.6   0.1    5.6e-25   87.1   0.0    3.4  3  DUF3437    Domain of unknown function (DUF3437)
    8.1e-05   22.6   6.6       0.02   15.1   0.1    6.1  7  HEAT       HEAT repeat
    0.00034   20.9   0.0        0.1   13.0   0.0    3.9  4  HEAT_2     HEAT repeats
     0.0093   16.3   0.0      0.073   13.4   0.0    2.6  1  TAF6_C     TAF6 C-terminal HEAT repeat domain
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.046   14.0   0.0    1.7  1  BLM10_N    Proteasome-substrate-size regulator, N-terminal
       0.14   12.1   0.3       0.88    9.6   0.1    2.5  3  Cnd1       non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> BLM10_mid  Proteasome-substrate-size regulator, mid region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.2   0.0  1.1e-179  2.8e-176       1     523 [.     390     910 ..     390     911 .. 0.96

  Alignments for each domain:
  == domain 1  score: 587.2 bits;  conditional E-value: 1.1e-179
   BLM10_mid   1 LekLiksietffHPSnsGswtkplskfvkelikeflkRwneEekkecktpeerrLteeikkefVkiLrtvvllgifskdskvanyaqsaLklLalLePd 99 
                 LekLi+s+e+ffHPSn G w+ +l++fv++l+ ef kRw+eE++++cktp +rrLt+ei+++f++iLrt+vll++fskd+ +++y+q+a++++alLeP 
  CDO70260.1 390 LEKLITSVESFFHPSNYGIWSLNLTHFVQRLMAEFSKRWKEEQQQHCKTPVTRRLTPEIRRNFITILRTPVLLSMFSKDPFTISYSQAAIRSMALLEPA 488
                 89************************************************************************************************* PP

   BLM10_mid 100 lilpkiLeriypsLeglnethRtiasLkalttlarvlvstklyrv...hltplLslllpgIDlNDlekTlntlnfivsvaqfipiedltkeeeelsdes 195
                 l++p+iLer+y+ Le++nethRt++++++l+++a +lvs+k+y     h++plL+l++pgIDlND+ kT+++++fi+sv+q+++i+d+++++  ++ +s
  CDO70260.1 489 LVMPEILERAYSGLEVVNETHRTTSVMTMLSAVALPLVSEKIYLGgqkHVIPLLELCIPGIDLNDPVKTICATMFITSVVQHMKIADVSMHQVGVDLSS 587
                 ********************************************999*********************************************7444444 PP

   BLM10_mid 196 la..lefiqqevekleekk..eeeeeeeefeldkeeeeaalrsStaaFeewvksfldrvftLlenlPeeskkk...sgklEesvvnklpatldillesl 287
                  a   + ++ + ++ +  +  + ++   +++l++eee+a++r+Sta++++wv+s+++rv++L+enlPee++kk   +gk+Ee+v+++++ +ld+++ +l
  CDO70260.1 588 DApaEDVMDVDPSNTQ--QlpSGVDAPGMPTLSREEERALTRESTAGWADWVTSLFRRVLALYENLPEEGGKKgttGGKMEEAVLKAIKGALDTVCLHL 684
                 4400334444444444..2558899999*******************************************999************************* PP

   BLM10_mid 288 sdelfdlalkkvvdfvsnnvksnavdavaellaalvkanpektlkkllpllienIreeiengAgsvrttse..ilprDraLvwnlsiLnevvrnageal 384
                 sd+lfdl+lk v++++s+n+ksnav+a+++l+++l++a+pekt++++lp+++++I+ee+++gA+s+rtts+  ++p+D++L+wn+siL++++++ g+++
  CDO70260.1 685 SDPLFDLVLKLVFEYASTNAKSNAVRAFGQLVSCLARARPEKTIDRFLPFCVAQIQEELKHGASSIRTTSTheAVPSDTTLHWNMSILRGCFGYGGATV 783
                 *******************************************************************998889************************** PP

   BLM10_mid 385 LkykdellellklllekcksergyvltsklvhslLltLtktyptesrlvnpeeekseelkeehWGklqedenlkikWhvPseeeidfAvelleeivepa 483
                 Lkykd+ll l+ ll+ek+ksergy+ t++l++++L+t  ++y+++sr vnp+e++s+e          +++nl+ +W vP+++ei+f++e++++i+ pa
  CDO70260.1 784 LKYKDQLLGLMALLVEKTKSERGYTGTGRLINRVLHTAATIYTLNSRYVNPDEWDSPE----------FNRNLTTQW-VPNRKEIEFVLEIMDKIAAPA 871
                 ******************************************************8886..........6699*****.9******************** PP

   BLM10_mid 484 lkkleklleeekskkdkewsdelcryllllrlalsGislL 523
                 l+++e+lle+   k+d++ ++++cryl++ r+++ G++++
  CDO70260.1 872 LDRVEALLETV-GKWDSVARNDFCRYLHAARSVWGGLPTF 910
                 *********97.9************************997 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.56   1.4e+03      10      34 ..      52      78 ..      47     101 .. 0.79
   2 ?   -3.2   0.0       3.3   8.4e+03      25      52 ..    1771    1799 ..    1768    1806 .. 0.80
   3 !   87.1   0.0   2.2e-28   5.6e-25       4      88 .]    1841    1922 .]    1838    1922 .] 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.56
     DUF3437 10 glsAlvlafpyd..vPkwlpevleeLa 34
                 l ++++a py+  +P+ +   le+++
  CDO70260.1 52 SLESYIKALPYEceSPEQMQAKLEHIV 78
                6899*******8445788888888765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
     DUF3437   25 wlpevleeLaraardpa.pirktvkktls 52  
                   + +++  L ++ +d++ ++r+ ++k+ls
  CDO70260.1 1771 IVSRLMNVLLDCLSDENiEVREMASKMLS 1799
                  5667788899999999989***9999997 PP

  == domain 3  score: 87.1 bits;  conditional E-value: 2.2e-28
     DUF3437    4 rhaavlglsAlvlafpydvPkwlpevleeLaraardpapirktvkktlseFkrthqDtWeedkkkFteeqledledvllspsYya 88  
                   h+avlgl+Al+++fpy+v +w+p++ e La +a+dp pi+kt++k+ seFk+   DtW++d+ +F+e+ql+ l+++l+ +sYya
  CDO70260.1 1841 LHSAVLGLCALIESFPYSVEPWMPPLTEVLAIHATDPLPISKTIRKCASEFKK---DTWHKDQLAFNEDQLQSLSTMLVGTSYYA 1922
                  69*************************************************97...99**************************8 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.068   1.8e+02       3      30 ..     690     718 ..     688     719 .. 0.77
   2 ?   -3.0   0.0       5.1   1.3e+04       2      20 ..    1065    1083 ..    1064    1089 .. 0.77
   3 ?    0.7   0.0      0.34   8.7e+02       5      30 ..    1276    1301 ..    1273    1302 .. 0.88
   4 ?   -0.1   0.0      0.59   1.5e+03       3      29 ..    1576    1602 ..    1575    1604 .. 0.84
   5 ?   -0.3   0.0       0.7   1.8e+03       6      24 ..    1737    1756 ..    1733    1760 .. 0.78
   6 !   15.1   0.1   7.9e-06      0.02       1      26 [.    1775    1800 ..    1775    1805 .. 0.88
   7 ?   -2.8   0.0       4.6   1.2e+04      13      30 ..    1837    1854 ..    1835    1855 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.068
                 HHHHHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 Plllkll.sDpspeVReaAakaLgalaev 30 
                 +l+lkl  +  s +  ++A++a+g+l+++
  CDO70260.1 690 DLVLKLVfEYASTNAKSNAVRAFGQLVSC 718
                 56677754777778889*********997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.1
                  HHHHHHHHT-SSHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaA 20  
                  l  l+++  +p  +VR+ A
  CDO70260.1 1065 LEDLIEMSLSPYTRVRRHA 1083
                  5558899999*****9866 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.34
                  HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    5 llkllsDpspeVReaAakaLgalaev 30  
                  +lk   +p+  +R +A ka+++++ +
  CDO70260.1 1276 FLKQSISPHTTIRVTAQKAVVKVCAH 1301
                  7888889**************99977 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.59
                  HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalae 29  
                  +l+l + +   +e+R+  a+++ a+++
  CDO70260.1 1576 NLFLDNANTGYAEIRSQIAQNVYAILS 1602
                  577778888899************987 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.7
                  HHHH.T-SSHHHHHHHHHHH CS
        HEAT    6 lkll.sDpspeVReaAakaL 24  
                  ++++ s+ s+++R +A+ +L
  CDO70260.1 1737 INAIkSSVSWRIRVNALPTL 1756
                  56665789********9777 PP

  == domain 6  score: 15.1 bits;  conditional E-value: 7.9e-06
                  HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLga 26  
                  l+++ll +lsD++ eVRe+A k L  
  CDO70260.1 1775 LMNVLLDCLSDENIEVREMASKMLSG 1800
                  79******************987765 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 4.6
                  SHHHHHHHHHHHHHHHHC CS
        HEAT   13 speVReaAakaLgalaev 30  
                  s +V  +A++ L+al+e 
  CDO70260.1 1837 SLRVLHSAVLGLCALIES 1854
                  5678889*******9985 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.3   5.8e+03      11      36 ..     704     731 ..     690     737 .. 0.54
   2 ?    2.6   0.0      0.07   1.8e+02       4      55 ..    1068    1125 ..    1063    1138 .. 0.74
   3 ?   -0.2   0.0      0.53   1.4e+03       3      53 ..    1104    1165 ..    1102    1217 .. 0.59
   4 !   13.0   0.0     4e-05       0.1       3      71 ..    1735    1817 ..    1733    1823 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.3
      HEAT_2  11 dpdpevrr..aairaLgrignpealpaL 36 
                  ++ +vr+  + + +L+r +++++++ +
  CDO70260.1 704 AKSNAVRAfgQLVSCLARARPEKTIDRF 731
                 3333444434455555566777766665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.07
      HEAT_2    4 LlqalendpdpevrraairaLg.....rignpea.lpaLvell.ededpavRraaaeaL 55  
                  L++    +p + vrr+a  +L        ++++  lp+L+++l +  dp+  + a  +L
  CDO70260.1 1068 LIEMS-LSPYTRVRRHAQAVLHnacgyYVRSTRFtLPYLFRALeKKNDPDCMKGALYSL 1125
                  55544.58889999999999998777644554435********5567799999998887 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.53
      HEAT_2    3 aLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaae 53  
                  +L  ale+  dp+  + a+ +L ++g+            ++l aL+++   e+p v++ +a+
  CDO70260.1 1104 YLFRALEKKNDPDCMKGALYSLWNKGTAayaladinfhgQYLVALLNCQHEEKPSVQKLVAN 1165
                  55555555555554444444444444432222222221244555555555566777777664 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 4e-05
      HEAT_2    3 aLlqalendpdpevrraairaLg........rignp......ealpaLvellededpavRraaaeaLg...aigdpealpaLkell 71  
                   +++a++++ ++ +r +a+ +L         +          ++++ L+++l+de+ +vR++a + L+   ++   +++  Lk ++
  CDO70260.1 1735 NFINAIKSSVSWRIRVNALPTLIvffyrnllS---MsssivsRLMNVLLDCLSDENIEVREMASKMLSgvvRCSQRQSIIPLKNRF 1817
                  67889999999999999999999886665442...144466689***********************7444556788888888776 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.8e-05     0.073      15      76 ..    1783    1851 ..    1742    1856 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
      TAF6_C   15 eledhwaLRdfAAslLakilkkys.ssyktLkprvtrtllkvlldp......kkslgtlyGallglaal 76  
                   +++++++R++A+++L+ +++  + +s   Lk+r ++tl k+ l +      ++sl +l  a+lgl+al
  CDO70260.1 1783 LSDENIEVREMASKMLSGVVRCSQrQSIIPLKNRFISTLRKTKLPKrddpayHDSLRVLHSAVLGLCAL 1851
                  47888**************99766266789************955422235566777788888888876 PP

>> BLM10_N  Proteasome-substrate-size regulator, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.046      38      69 ..      50      81 ..      30      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
     BLM10_N 38 rprtfpyeklLPYkvEsekerakyLshilknL 69
                r    +y k LPY++Es+++ ++ L+hi+   
  CDO70260.1 50 RASLESYIKALPYECESPEQMQAKLEHIVGRI 81
                555567999*******************9765 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.5   1.1e+04      90     118 ..    1160    1186 ..    1145    1200 .. 0.65
   2 ?    9.6   0.1   0.00034      0.88      47     105 ..    1763    1822 ..    1747    1836 .. 0.72
   3 ?   -3.0   0.0       2.5   6.5e+03       6      30 ..    1844    1870 ..    1839    1871 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.5
        Cnd1   90 enaiynllpdiisklsdalnecsewgqit 118 
                  ++++ n+ +d + +l+   ++c+ +++++
  CDO70260.1 1160 QKLVANIAQDALVYLN--EESCHTDAFTE 1186
                  3667777788888887..34777777665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00034
        Cnd1   47 kLilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiiskls 105 
                  +L+++   +++ +++ l+++l+Den +V+++a  +l+ + +  + + i+ l+   is l 
  CDO70260.1 1763 NLLSMSSSIVSRLMNVLLDCLSDENIEVREMASKMLSGVVRCsQRQSIIPLKNRFISTLR 1822
                  456666667777778888888888888888888888877777544666667766766665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.5
        Cnd1    6 airtlg..cirvpnlveylvepLrkrL 30  
                  a+  l+     +p  ve++++pL++ L
  CDO70260.1 1844 AVLGLCalIESFPYSVEPWMPPLTEVL 1870
                  566677655579999********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.50
# Mc/sec: 11580.82
//
Query:       CDO70261.1  [L=281]
Description: hypothetical protein BN946_scf184942.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-27   96.6   0.2      7e-16   58.6   0.0    2.3  2  Chalcone_2  Chalcone isomerase like
  ------ inclusion threshold ------
      0.032   14.3   0.0      0.046   13.8   0.0    1.3  1  Chalcone_3  Chalcone isomerase-like


Domain annotation for each model (and alignments):
>> Chalcone_2  Chalcone isomerase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.0     9e-13   8.1e-09       2      30 ..     107     135 ..     106     149 .. 0.87
   2 !   58.6   0.0   7.8e-20     7e-16      72     204 .]     145     274 ..     133     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 9e-13
  Chalcone_2   2 eytLlGlGvRtVsflsiqVYvvGlYvaks 30 
                 ++tL+G+GvRtVsfl+i+VY+vG+Y++ +
  CDO70261.1 107 TFTLMGVGVRTVSFLGIKVYSVGFYADLT 135
                 689**********************8755 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 7.8e-20
  Chalcone_2  72 eelweelldegirtavrivPvrnTdfshLrDGfvraitarakkkk.....eeeedeefgeslkefkslFnrkgsvpkgkeLlLerdangeLsvlyedkk 165
                 ee +e ++++   +++rivP+r+T++shLrDGf+ra++ar    +     + +e+ ++++ l+++ks+F++   ++k++ L +  +a      + ++ +
  CDO70261.1 145 EEKIEYIVRN-RACVLRIVPTRSTSYSHLRDGFMRALQARQLLCRqrgqlTPDEELAIQSPLRKLKSMFPN-TPLAKHSPLDILITAP-----SPKQPR 236
                 4555555554.46899************************766665677888889999***********99.9********7777743.....345566 PP

  Chalcone_2 166 kkkleklGrvedervsrllwlnYLagkkvaseearksvv 204
                 +  ++ lG+v++ +++  + l+Y+ g k +s+++++ vv
  CDO70261.1 237 TLIVRDLGSVQSDWLASEFVLAYFEG-KGISPPLKEAVV 274
                 668999******************88.679999999886 PP

>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.2e-06     0.046       8      57 ..      92     147 ..      88     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.2e-06
  Chalcone_3   8 klpdtvtvgg....keLkLnGaGlRskff..fkvYvagLYlpekssdaeailaaee 57 
                 ++p+t+++++     +++L G+G+R++ f  +kvY +g Y   ++ + e+   +e+
  CDO70261.1  92 EFPTTLKINSrtplPTFTLMGVGVRTVSFlgIKVYSVGFYADLTNPKLEDATPEEK 147
                 566666666533335799*******86653389*******9988887777765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2068.58
//
Query:       CDO70262.1  [L=367]
Description: hypothetical protein BN946_scf184942.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-22   78.3   0.0    3.8e-18   65.7   0.0    2.2  2  TIM21     TIM21


Domain annotation for each model (and alignments):
>> TIM21  TIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   2.1e-22   3.8e-18       9     105 ..      96     193 ..      90     214 .. 0.90
   2 !   10.3   0.0   2.7e-05      0.49     107     137 ..     312     341 ..     307     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 2.1e-22
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTHHHHHHHHHHHHHHH-HHHHHHT----..EEEC-ECCSSSSCCC--SEEEEEE-TTSSEEEEEEEEEE-S CS
       TIM21   9 tlsliivlagvgvtglvlYlilselfspsgdtkifnrAlekveedeevrevlgerl..kayGeetrrdrWtRnrpivstreldkeGkehlrmkFhvegk 105
                 ++   ++lag+g++ +++Y++ selfs +++t ++n+A +++++ ++v++ l+e+l    +  +++r r  Rn+  +s+  +d  G+eh+ ++F+v+g+
  CDO70262.1  96 SVGGKVILAGAGLSIVLIYALTSELFSRNSPTVLYNKACDLIKASPQVHQYLQEPLvfHNHPPTVTRPR-HRNHFVSSQIFVDSTGREHMLLNFYVQGR 193
                 566789************************************************993345566888888.9999999999*****************94 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 2.7e-05
                 -EEEEEEEEEE-SS-SS-EEEEEEEEETTCE CS
       TIM21 107 kkgtvklelkesdesgklefrylyvdvpgek 137
                  +g v+++l+ +d+ g +efryl +d+p+ +
  CDO70262.1 312 TEGEVHADLVMNDQ-GYYEFRYLLIDMPNSN 341
                 689**********7.************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2791.01
//
Query:       CDO70263.1  [L=118]
Description: hypothetical protein BN946_scf184942.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-33  113.2   0.1    6.4e-33  113.0   0.1    1.1  1  ATP-synt_F      ATP synthase (F/14-kDa) subunit
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.02   14.8   0.0    1.2  1  AhpC-TSA        AhpC/TSA family
      0.018   14.3   0.0      0.018   14.3   0.0    1.1  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.1   1.1e-36   6.4e-33       2      91 .]      12     112 ..      11     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.1e-36
                 EEEESHHHHHHHHHTTCEEEE............CSSHHHHHHHHHHHHHHTTEEEEEEEHHHHCCCHHHHHHCTCSSSSEEEEESCSCCGGSHHCHHHH CS
  ATP-synt_F   2 avIGdedtvtgfrlaGvgeve............vtdeeeieealkelleredigiilitekiaeeirelideykeealPaileIPskegpydeekdsvr 88 
                 avIGdedtvtg++laG+g+v             +t+  +ie+a++e+++r+di+i++i++++ae+ir  +d+y+e ++Pa+leIPsk++pyd++kds++
  CDO70263.1  12 AVIGDEDTVTGMLLAGIGNVSqnqkknflvvdsKTQIPTIEAAFEEFTQRKDIAILFINQHVAEKIRPMVDKYQE-PFPALLEIPSKDHPYDPSKDSIL 109
                 9*******************************9999***************************************.*********************** PP

                 HHH CS
  ATP-synt_F  89 kkv 91 
                 k+v
  CDO70263.1 110 KRV 112
                 998 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.4e-06      0.02      42      89 ..      45      93 ..      42      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-06
                HHHHHHHHHCHHHCC.CTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE- CS
    AhpC-TSA 42 ttelpalaklyeefk.ergvevigvsvdspeshkkfiekeslnfpllsD 89
                +t++p +++++eef+  +++ ++ ++    e+++  ++k++ +fp l+ 
  CDO70263.1 45 KTQIPTIEAAFEEFTqRKDIAILFINQHVAEKIRPMVDKYQEPFPALLE 93
                799***********94669**************************9976 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     3e-06     0.018     131     167 ..       5      42 ..       1      93 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-06
  DXP_synthase_N 131 gekkkvvaviGDgaltgGmafealnnigel.kkkllvi 167
                     +++++++aviGD    +Gm + ++ n++++ kk++lv+
      CDO70263.1   5 SQDRNLLAVIGDEDTVTGMLLAGIGNVSQNqKKNFLVV 42 
                     46899**********************87725566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 888.48
//
Query:       CDO70264.1  [L=801]
Description: hypothetical protein BN946_scf184942.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-95  321.1  15.0    2.2e-95  320.3   9.0    3.1  2  SGT1      SGT1 protein


Domain annotation for each model (and alignments):
>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.3   9.0   1.2e-99   2.2e-95      32     473 ..       4     488 ..       1     630 [. 0.78
   2 ?   -1.2   0.3     0.028     5e+02     516     561 ..     684     729 ..     675     758 .. 0.63

  Alignments for each domain:
  == domain 1  score: 320.3 bits;  conditional E-value: 1.2e-99
        SGT1  32 kvapllveYiWqkdpFnLkvrtek..gdlpahlgGvtkfGdnieDEWFiVyLlkeitkefpelvarvedndgeflLieaaevlPkWlnPdtsenrvfiy 128
                   ++ll +++W++d+F+Lkv +    ++    l+G ++ Gd i+DEW  V+Ll+ei++++ ++v++v+d+dgeflLieaa+ lP+W++P ++enrv+i+
  CDO70264.1   4 YTKSLLPDHLWHRDSFELKVAPDPegNKDKWVLEGLMRVGDCIDDEWCAVWLLREISRKW-DVVISVWDSDGEFLLIEAADELPSWVTPANAENRVWIH 101
                 56789999************998844455677***************************9.6899********************************** PP

        SGT1 129 kGelhiipkss................ksseve.lk....akepslsqalellsknpeetlasesiqsaikkrlkgYpekikeslhrahvyvPasvaav 206
                 + +lh++p s+                +s+e e ++    +  +  ++a++l+++   et a e++++++ kr+ gYp+  ++ +h +++y+P  va+ 
  CDO70264.1 102 NSRLHLVPLSHisapsarnrrrrylphQSEEEEeQPeddgDDFILATDAVKLVRDPLVETTAPENVERVVWKRIAGYPAASRQHVHVTKAYLPLDVAKA 200
                 *******98641111111111111111111111111111123356789*************************************************** PP

        SGT1 207 LkqrPsLvapAVqaFylRdpvdlkacrtmktFppetrvltsvtftrclYAqLvqqkftpdkrsgyklpsrsdpeykaaelGmklAhGfEiLcskakkas 305
                 L+  P+Lv +AV+aFy Rd ++l+a+++m +Fppe  vl+sv++tr  YAqLv qkf+p+k  g     + ++e++ +++Gmk+A+GfE+L++++k+ +
  CDO70264.1 201 LAVDPTLVQKAVEAFYTRDALQLRAAQKMARFPPEPSVLASVRMTRTAYAQLVGQKFHPPKVFGRWAEREGSKEWRWRDIGMKIACGFEMLYQESKNRK 299
                 **************************************************************997677778888******************9998766 PP

        SGT1 306 .............ses.eselekekkwkaylesLkkkgYFkgelegSaeYkellekAeeyfkqsvasssssasspgeeilelLksaleleleelkkeee 390
                               ++ +++l +++++++yle L + gYF+ge++gS++++el++kA + f    + + +++ s ++ ++  L +   +e   l + e 
  CDO70264.1 300 etlsvhfdgspesLQAlKDNLRRNAEYSQYLERLASAGYFRGEIQGSQKWNELENKAATAFVAARKDDDATRLSFATAVQAALGR--YTEDRGLPSGE- 395
                 556555555444223457788999**************************************9999999**************55..56777788777. PP

        SGT1 391 elppedddsWLeiseeeLdkllqeragekelv..............eesskeeeasydleevtksmkaFldkvSsheGaelPeskeekevsfdvdsf 473
                     ed d+WL++++ + d++l+++ g  + +              +e++ ++ +   l++++k++++F++   ++eGa + ++ ++ e + d+ds 
  CDO70264.1 396 ----EDPDDWLNVDAADFDAMLEKTMGADKGKekasdamdvdasedSEERVAKAQAARLKDLAKKVEEFVEGEGDLEGARFADEVSSDEGDSDDDSD 488
                 ....8********************9988877899********98777778889999************************6644444444444332 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.028
        SGT1 516 eeeskeeekeslksYmdqmdeELaqttvgksFekkkkkkekakkke 561
                 ++ s +++++s ++ m++md ELa++  + +  ++ ++k k +++e
  CDO70264.1 684 KKGSPDSSLHSFEAVMQAMDFELARARGETATASQAADKGKGRAHE 729
                 5556677788889999999*99999875555444444443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 5294.69
//
Query:       CDO70265.1  [L=376]
Description: hypothetical protein BN946_scf184942.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2741.95
//
Query:       CDO70266.1  [L=333]
Description: hypothetical protein BN946_scf184942.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-09   35.8   7.0    7.6e-09   35.3   7.0    1.2  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    1.4e-08   34.5  10.5    2.2e-08   33.8  10.5    1.3  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    2.5e-08   33.6   8.8    3.9e-08   33.0   8.8    1.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    1.2e-07   31.9   9.0    1.8e-07   31.3   9.0    1.3  1  zf-RING_2     Ring finger domain
    9.8e-06   25.5   7.4    1.1e-05   25.4   6.1    1.8  2  zf-RING_UBOX  RING-type zinc-finger
    1.6e-05   24.8  10.0    0.00017   21.5  11.0    1.9  2  zf-RING_5     zinc-RING finger domain
    8.8e-05   22.6  10.5    0.00016   21.8  10.5    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
     0.0019   18.0   8.8        0.1   12.4   9.9    2.3  2  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.043   13.9   1.8      0.078   13.0   1.8    1.4  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.16   11.9   6.1       0.27   11.1   6.1    1.3  1  zf-RING_6     zf-RING of BARD1-type protein
       0.18   11.6   6.6        1.4    8.8   0.6    2.7  3  GAGA          GAGA factor
       0.27   11.0   6.0       0.47   10.2   6.0    1.4  1  zf-MIZ        MIZ/SP-RING zinc finger
       0.38   10.6   3.1       0.69    9.8   3.1    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
       0.83   10.0   8.6          8    6.8   8.7    2.1  2  zf-rbx1       RING-H2 zinc finger domain
        1.2    9.0   8.2        7.4    6.4   8.6    2.0  2  zf-RING_4     RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   7.0   6.4e-12   7.6e-09       2      48 ..     192     241 ..     191     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 6.4e-12
                 GSB-TTTSSS.BS-EEETTEEEEEE-HHHHHHHHH...TT-B-TTT--B-- CS
  zf-C3HC4_3   2 deeCviCler.prnvvllpCgHlvlCeeCaekllk...rkkkCpiCrrpie 48 
                 + +C+iC++   ++++  pCgH  +C eC+ ++lk   rk++Cp+Cr+  +
  CDO70266.1 192 ELTCPICYDFlVATHTTAPCGHS-CCGECLLTYLKgvgRKATCPVCRAALT 241
                 689******648889999*****.***********************9765 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8  10.5   1.8e-11   2.2e-08       2      40 .]     195     236 ..     194     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.8e-11
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLe...ekneCPlC 40 
                 CpiC+d+l  + +++pCgH+ C +C+l++L+   +k  CP+C
  CDO70266.1 195 CPICYDFLVATHTTAPCGHSCCGECLLTYLKgvgRKATCPVC 236
                 ****************************9974436779**** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   8.8   3.3e-11   3.9e-08       1      41 []     195     236 ..     195     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.3e-11
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC.TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks.rkkvkCPlC 41 
                 CpiC + ++ ++++ +C+Hs+C +C++++lk   +k +CP+C
  CDO70266.1 195 CPICYDFLVATHTTAPCGHSCCGECLLTYLKGvGRKATCPVC 236
                 ********************************988899**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   9.0   1.5e-10   1.8e-07       2      44 .]     194     237 ..     193     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.5e-10
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst...CPlCr 44 
                 +CpIC+ ++  a ++++ pCgH+++ eCl ++l+   +   CP+Cr
  CDO70266.1 194 TCPICY-DFLVATHTTA-PCGHSCCGECLLTYLKGVGRkatCPVCR 237
                 7****8.5656677775.5**********999777666777****9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   6.1   9.1e-09   1.1e-05       1      39 []     195     234 ..     195     234 .. 0.85
   2 ?    1.6   0.1      0.25     3e+02       1      11 [.     233     245 ..     233     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 9.1e-09
  zf-RING_UBOX   1 CpIClelftdP.lvl.pCGHtFCreClwelskslegafkCP 39 
                   CpIC++ +    + + pCGH+ C eCl ++ k+ +++ +CP
    CDO70266.1 195 CPICYDFLVAThT-TaPCGHSCCGECLLTYLKGVGRKATCP 234
                   ******8874322.448**********88999********9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.25
  zf-RING_UBOX   1 CpIClelft..dP 11 
                   Cp+C+  +t  +P
    CDO70266.1 233 CPVCRAALTraRP 245
                   ****988875555 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.063        75      34      42 ..     190     198 ..     177     200 .. 0.74
   2 !   21.5  11.0   1.4e-07   0.00017       2      43 ..     195     237 ..     194     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.063
   zf-RING_5  34 ekeavCpiC 42 
                 e+e +CpiC
  CDO70266.1 190 EEELTCPIC 198
                 7899***** PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.4e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll...ekeavCpiCr 43 
                 C++C++ l       + +CgH++C +Cl ++l   +++a+Cp+Cr
  CDO70266.1 195 CPICYDFL--VATHTTAPCGHSCCGECLLTYLkgvGRKATCPVCR 237
                 99999999..8888999***************************9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  10.5   1.3e-07   0.00016       1      42 []     195     236 ..     195     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-07
  zf-C3HC4_4   1 CPiCldYLek.PvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 CPiC d+L    ++ +CGhs+C +C+  + k     + +Cp+C
  CDO70266.1 195 CPICYDFLVAtHTTAPCGHSCCGECLLTYLKGVGR-KATCPVC 236
                 *******975168899***************9955.6****** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.4       0.1   1.2e+02      32      37 ..     194     199 ..     186     207 .. 0.77
   2 !   12.4   9.9   8.8e-05       0.1       9      43 ..     204     243 ..     195     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.1
  Prok-RING_4  32 sCPlCq 37 
                  +CP+C 
   CDO70266.1 194 TCPICY 199
                  8****6 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.8e-05
  Prok-RING_4   9 kkailepCgHlvCkeCfdsk.....dlssCPlCqrrisks 43 
                   ++  +pCgH  C eC+          ++CP+C+  + ++
   CDO70266.1 204 ATHTTAPCGHSCCGECLLTYlkgvgRKATCPVCRAALTRA 243
                  578889**********987644444444******988766 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.8   6.5e-05     0.078      34      82 ..     194     241 ..     183     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
                 --TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB-- CS
  zf-ANAPC11  34 tcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfk 82 
                 tcp c       +     c h+    c+l++l+    k  cp+cr +++
  CDO70266.1 194 TCPICYDF-LVATHTTAPCGHSCCGECLLTYLKGVGRKATCPVCRAALT 241
                 66666432.233344567***************************8765 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.1   0.00022      0.27       1      47 [.     186     237 ..     186     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
   zf-RING_6   1 larlekllrcsrctdilrepvclggcehifcsncisdcf.gsg....cpvcy 47 
                 larle  l c  c d l        c h  c +c+   + g g    cpvc 
  CDO70266.1 186 LARLEEELTCPICYDFLVATHTTAPCGHSCCGECLLTYLkGVGrkatCPVCR 237
                 89********************************976542433334499996 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       4.4   5.3e+03      12      31 ..     117     137 ..     109     149 .. 0.53
   2 ?    5.5   0.0     0.012        15      24      31 ..     192     199 ..     186     203 .. 0.81
   3 ?    8.8   0.6    0.0011       1.4      25      40 ..     231     246 ..     228     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.4
                 ----CCCCTTS--.EE-TTT- CS
        GAGA  12 llkiksksqsEqP.AtCPiCq 31 
                 +++  s  qs  P A  P+ +
  CDO70266.1 117 IEQTVSVTQSSTPsADRPLSY 137
                 555566667766633345554 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
                 -EE-TTT- CS
        GAGA  24 PAtCPiCq 31 
                   tCPiC+
  CDO70266.1 192 ELTCPICY 199
                 56*****9 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0011
                 EE-TTT--EESSHHHH CS
        GAGA  25 AtCPiCqAviRqsRnL 40 
                 AtCP+C A +  +R L
  CDO70266.1 231 ATCPVCRAALTRARPL 246
                 9*******99888865 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.0   0.00039      0.47       2      49 ..     192     238 ..     191     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00039
                 ESB-TTTSSB-SSEEEETT--SS--EEH.HHHHHHHHHS---B-TTT-- CS
      zf-MIZ   2 slkCplslsrikiPvrgekCkHlqCfdl.esylelnertetWnCPvCsk 49 
                 +l+Cp+ ++ +     +  C H  C ++  +yl+   r+ t  CPvC +
  CDO70266.1 192 ELTCPICYDFLVATHTTAPCGHSCCGEClLTYLKGVGRKAT--CPVCRA 238
                 589***********************96268****999996..****86 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   0.00058      0.69      11      56 ..     192     236 ..     185     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00058
                 XSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT.S-EE-SCCC- CS
      zf-Nse  11 slkCPltlqpfeePvtskkCpHvFEreaIlelikrk.ktvkCPvagC 56 
                 +l+CP+    ++   t   C H+   e +l+++k + +++ CPv  C
  CDO70266.1 192 ELTCPICYDFLVATHTTAPCGHSCCGECLLTYLKGVgRKATCPV--C 236
                 79*******************************76527899***..7 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.45   5.4e+02      45      54 ..     189     198 ..     184     199 .. 0.80
   2 ?    6.8   8.7    0.0067         8      26      55 .]     205     237 ..     188     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.45
     zf-rbx1  45 lktrkvCPlc 54 
                 l+++ +CP+c
  CDO70266.1 189 LEEELTCPIC 198
                 677889***9 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0067
     zf-rbx1  26 pvvlGeCgHaFHlhCiskWlkt...rkvCPlcr 55 
                 + ++  CgH+   +C+ ++lk    +++CP+cr
  CDO70266.1 205 THTTAPCGHSCCGECLLTYLKGvgrKATCPVCR 237
                 456679***************999899*****8 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.81   9.7e+02      35      43 ..     190     198 ..     183     202 .. 0.73
   2 ?    6.4   8.6    0.0062       7.4      17      45 ..     208     238 ..     195     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.81
   zf-RING_4  35 eeegrCPaC 43 
                 eee  CP C
  CDO70266.1 190 EEELTCPIC 198
                 567889988 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0062
   zf-RING_4  17 pCeCgyqiClfCyhrile..eeegrCPaCre 45 
                   +Cg+  C  C+   l+    ++ CP Cr 
  CDO70266.1 208 TAPCGHSCCGECLLTYLKgvGRKATCPVCRA 238
                 458**********9999966579*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2348.48
//
Query:       CDO70267.1  [L=652]
Description: hypothetical protein BN946_scf184942.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4306.00
//
Query:       CDO70268.1  [L=282]
Description: hypothetical protein BN946_scf184942.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-73  246.6   0.0    2.6e-73  246.4   0.0    1.1  1  Translin  Translin family
  ------ inclusion threshold ------
      0.022   14.9   0.1        5.7    7.1   0.0    2.3  2  SesA      N-terminal domain on NACHT_NTPase and P-loop NTPase


Domain annotation for each model (and alignments):
>> Translin  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.0   2.9e-77   2.6e-73       1     204 [.      34     235 ..      34     236 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 2.9e-77
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTGSST.TTHHHHHHH.H..HHHHHHHHHHTTSS..........GHHHHGGGTH.HHHHHHHHHHHHHHHHHSS CS
    Translin   1 drreriikasrditaaskkiifllhrvrsek.teaqdkkakik..keakeklkeiakllasvaeelqgsnayrYqrqisgglqeliealsfahYletqt 96 
                 drrer+ik+srdit++skk+ifllhr+ +e+  e++d+   ++  + ak kl+ei++l+a+++eel g++++rYqr++s+glqe+iealsfahYle++ 
  CDO70268.1  34 DRRERLIKSSRDITNLSKKLIFLLHRIVTEDaGESDDRLLGLRaaTRAKPKLNEIQSLFARMREELAGDRFWRYQRNVSPGLQEYIEALSFAHYLEHKA 132
                 9***************************999766555444444559***************************************************** PP

                 ---HHHHHHHTT.---SSSSSS---HHHHHHHHHHHHHHHHHHHHHHHCTT--S.HHHHHHHHHHHHHHHHHTS----HH...HHHHHTTHHHHHHHHH CS
    Translin  97 LitleevqkilealkeneedafhltpedYllGlfdLtgELmRfainsvalgdkeekplqilkflrelragfellnlkndsakdlrkKldvlkqsvkKvE 195
                 Li++++vq++l+  ++   + f+l+ edYllGl+dLtgELmRfai s+ ++++++k+++i++f+r+++a+fe+l++ ++   +lrkK++v++qs++K+E
  CDO70268.1 133 LISYDQVQSTLADPDG--VPYFELPLEDYLLGLADLTGELMRFAIASIPRRGGRQKASDICSFVRACKADFEGLTPYFK---ELRKKQTVTSQSLEKIE 226
                 ***********97766..***********************************************************75...7**************** PP

                 HHHHHHHHH CS
    Translin 196 dvvYdlsvR 204
                 d+ Y++ vR
  CDO70268.1 227 DATYAVVVR 235
                 ********9 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00064       5.7      50     111 ..      61     122 ..      17     124 .. 0.74
   2 ?    5.6   0.0    0.0019        17      11      49 ..     190     229 ..     184     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00064
        SesA  50 esskldedtesa.ikpvlesckekatkleeifekvapapadsrleryrkavrslgkgskVEtL 111
                  ++++ e+++      ++++ k k+++++++f  ++++ a  r+ ry++ v   g ++ +E+L
  CDO70268.1  61 VTEDAGESDDRLlGLRAATRAKPKLNEIQSLFARMREELAGDRFWRYQRNVSP-GLQEYIEAL 122
                 55555555444446788899999************************999988.887777776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0019
        SesA  11 aiklydaikd.ikglpeaFrevgkrLplvqetLedaksql 49 
                 ++++++a+k   +gl + F+e  k+  + ++ Le++++++
  CDO70268.1 190 ICSFVRACKAdFEGLTPYFKELRKKQTVTSQSLEKIEDAT 229
                 55566666655899999*****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2027.76
//
Query:       CDO70269.1  [L=260]
Description: hypothetical protein BN946_scf184942.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-05   23.3   0.4    0.00019   21.9   0.4    1.6  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
     0.0019   18.1   0.0     0.0032   17.4   0.0    1.3  1  DUF3875   Domain of unknown function, B. Theta Gene descripti


Domain annotation for each model (and alignments):
>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   2.1e-08   0.00019      12     100 ..      32     149 ..      26     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.1e-08
                 S-B-EEEE-SSEEEEE-SS.-S.SSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T....................-EEEEE--SCCC CS
      DcpS_C  12 epervvyedekfvvlkDik.pk.aklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne....................vdaeelrvgvhy 88 
                 + ++++ +d++f+v +    p  +k h++++ + +++s++ L++++lpll ++r+  + ++ +  +                       ++ +rvg+  
  CDO70269.1  32 NTHEILWRDDNFTVYRETAnPVsSKGHIVIVFNLHVPSIYTLSSSDLPLLVTLRDLSYRLLASLQTPssplsspisshpqgllasrpDLRQTFRVGFIT 130
                 5678999**********99666899999999999***********************999988764489999999999999999998777789999999 PP

                 T-.......-S-S--EEEE CS
      DcpS_C  89 qP.......svyhlHlHvi 100
                 +P         +hlH H  
  CDO70269.1 131 PPfkdnkipVTDHLHAHAY 149
                 9988887777889999976 PP

>> DUF3875  Domain of unknown function, B. Theta Gene description (DUF3875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.6e-07    0.0032      23      47 ..      53      77 ..      48      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.6e-07
     DUF3875 23 vSkdaditvafevelPEiFtvseke 47
                vS+ + i++ f++++P i+t+s+++
  CDO70269.1 53 VSSKGHIVIVFNLHVPSIYTLSSSD 77
                899********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1941.83
//
Query:       CDO70270.1  [L=1871]
Description: hypothetical protein BN946_scf184942.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-153  512.5   0.0   5.5e-137  457.6   0.0    3.0  3  BLM10_mid  Proteasome-substrate-size regulator, mid region
    3.6e-31  106.9   0.8    1.6e-30  104.9   0.1    2.6  3  DUF3437    Domain of unknown function (DUF3437)
    4.7e-06   26.4   1.8      0.029   14.6   0.1    4.9  5  HEAT       HEAT repeat
  ------ inclusion threshold ------
      0.012   16.0   1.5        1.8    9.0   0.0    4.6  5  HEAT_2     HEAT repeats
      0.017   15.6   0.0       0.22   12.1   0.0    2.5  2  HD_assoc   Phosphohydrolase-associated domain
      0.067   13.3   0.1       0.72   10.0   0.0    3.0  3  Arm        Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> BLM10_mid  Proteasome-substrate-size regulator, mid region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.7e-17   5.2e-14       1      52 [.     430     485 ..     430     487 .. 0.96
   2 !  457.6   0.0  1.8e-140  5.5e-137      79     523 ..     485     951 ..     484     952 .. 0.95
   3 ?   -0.4   0.0      0.11   3.4e+02     278     324 ..    1367    1413 ..    1346    1450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.7e-17
   BLM10_mid   1 LekLiksietffHPSnsGswtkplskfvkelikeflkR....wneEekkecktpee 52 
                 L++Li s+e+ffHP+nsGswt++ls f+k++++ f+kR    w eE++++cktp++
  CDO70270.1 430 LARLIASTESFFHPTNSGSWTSDLSAFIKYIVYDFNKRnisgWYEEQQPHCKTPSD 485
                 789**********************************999999**********986 PP

  == domain 2  score: 457.6 bits;  conditional E-value: 1.8e-140
   BLM10_mid  79 dskvanyaqsaLklLalLePdlilpkiLeriypsLeglnethRtiasLkalttlarvlvstklyrv...hltplLslllpgIDlNDlekTlntlnfivs 174
                 d+++++++qs++k+++++ePdlil++iLer++p+Le+l+ethRtia++kal ++a+++v +++y++   hl+p+L+lllpgIDlND+ kT++t++fi++
  CDO70270.1 485 DNSTVANIQSCMKSMSIMEPDLILHPILERAVPALEALVETHRTIAVIKALGAVAPAMVCRHVYYAgakHLIPILDLLLPGIDLNDPPKTFCTTSFISE 583
                 678899********************************************************************************************* PP

   BLM10_mid 175 vaqfipiedltkeeeelsde.slalefiqqevekleekk..eeeeeeeefeldkeeeeaalrsStaaFeewvksfldrvftLlenlPeeskkk..sgkl 268
                 vaq+i++++l + +  ++d  ++ ++ +++e+  le ++    +e ++e +l+keee+a+lr++  +F++wv +fl+rv+ L+enlPee+ ++  +g +
  CDO70270.1 584 VAQYIKFGELANPSVPIGDGlDVEIPRTTTELPVLEIEQfpGGVEPGSEATLSKEEEDAILRDTAGTFADWVAAFLRRVILLFENLPEEGPNGtaGGPT 682
                 *************9866554267788899999988888888889***********************************************9999**** PP

   BLM10_mid 269 EesvvnklpatldilleslsdelfdlalkkvvdfvsnnvksnavdavaellaalvkanpektlkkllpllienIreeiengAgsvr.ttse..ilprDr 364
                 E ++v++++ ++++++ +ls++l+d++l  ++d++++nv+snav+a+++l++++++anp+ktl+++lp++ ++Ir+e+e+gA+s r t+s   +lp+D+
  CDO70270.1 683 EVQLVDAVSGAFSQICVHLSEPLYDMVLGFIYDYATQNVRSNAVRAIHQLVECVANANPQKTLDRFLPFCERSIRTELEHGASSLRiTSSHstPLPSDA 781
                 **************************************************************************************7665578****** PP

   BLM10_mid 365 aLvwnlsiLnevvrnagealLkykdellellklllekcksergyvltsklvhslLltLtktyptesrlvnpeeekseelkeehWGklqed......... 454
                 +L+wnl+iL+++++n+g+  Lky+d+l++l+kll ek+ s+rgy++++kl++s+LltL +typ+e+++vnp+e++se+ ++  +++   d         
  CDO70270.1 782 TLHWNLAILRGAMYNDGRVTLKYRDQLISLFKLLNEKTFSKRGYSSSGKLLSSTLLTLSHTYPLENKFVNPDEWNSEGNPQLMFAEGLLDslvalqtsk 880
                 *****************************************************************************9777776654444467777778 PP

   BLM10_mid 455 ...enlkikWhvPseeeidfAvelleeivepalkkleklleeekskkdkewsdelcryllllrlalsGislL 523
                     ++ ++WhvP+ eeidf++++++e++ep+l++l +lle   +++d +w++++cr+l+++r+a++Gi++L
  CDO70270.1 881 lttISTGLTWHVPNAEEIDFVLRIFREVIEPVLDRLYSLLEPG-TARDAVWRNDFCRHLSFVRNAFAGIPTL 951
                 877778899********************************97.99************************98 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.11
   BLM10_mid  278 atldilleslsdelfdlalkkvvdfvsnnvksnavdavaellaalvk 324 
                   +++ +++ l+d  f+     + + +++n k++++ a +++ +++  
  CDO70270.1 1367 CCVKSIFQLLDDAPFEALKPIIEELIADNDKNKQRAAAEFIAGMISG 1413
                  4578899**************************99999999988764 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4   7.3e+03       9      30 ..      36      59 ..      33      67 .. 0.77
   2 ?   -4.1   0.0       5.2   1.6e+04      44      66 ..     454     476 ..     449     478 .. 0.76
   3 !  104.9   0.1   5.2e-34   1.6e-30       2      88 .]    1784    1871 .]    1783    1871 .] 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
     DUF3437  9 lglsAlvlafpydvP..kwlpevl 30
                + l+ + ++ py+v   + + e+l
  CDO70270.1 36 VKLCNYAKSIPYSVEpnSKMQEML 59
                56899999*****97566666665 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.2
     DUF3437  44 rktvkktlseFkrthqDtWeedk 66 
                 ++ +k ++ +F +     W e++
  CDO70270.1 454 SAFIKYIVYDFNKRNISGWYEEQ 476
                 55678889999999999997765 PP

  == domain 3  score: 104.9 bits;  conditional E-value: 5.2e-34
     DUF3437    2 lerhaavlglsAlvlafpydvPkwlpevlee.LaraardpapirktvkktlseFkrthqDtWeedkkkFteeqledledvllspsYya 88  
                  ++ haa+lg++Al+ ++py++ +w+pe+l++ La+++ dp pi++tv+k+ s+F++thqDtW+ed+kkFteeql++l+++l+ +sYya
  CDO70270.1 1784 RRLHAAILGVCALIDSYPYTIERWMPELLTSvLAEHTYDPIPISTTVRKCASNFRKTHQDTWHEDSKKFTEEQLAALSTLLSGSSYYA 1871
                  578***************************999******************************************************8 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         6   1.8e+04      19      28 ..     530     539 ..     530     540 .. 0.85
   2 !    5.8   0.0    0.0066        20      14      30 ..     719     735 ..     706     736 .. 0.89
   3 ?    0.8   0.0      0.26   7.9e+02       3      29 ..    1386    1412 ..    1384    1414 .. 0.85
   4 ?   -3.1   0.0       4.8   1.4e+04      12      18 ..    1688    1694 ..    1688    1697 .. 0.84
   5 !   14.6   0.1   9.8e-06     0.029       3      28 ..    1721    1746 ..    1719    1748 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                 a++kaLga+a
  CDO70270.1 530 AVIKALGAVA 539
                 7899***987 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0066
                 HHHHHHHHHHHHHHHHC CS
        HEAT  14 peVReaAakaLgalaev 30 
                  +VR++A++a+ +l+e+
  CDO70270.1 719 QNVRSNAVRAIHQLVEC 735
                 57************997 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.26
                  HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalae 29  
                  P++ +l+ D++ +  +aAa+ ++ +++
  CDO70270.1 1386 PIIEELIADNDKNKQRAAAEFIAGMIS 1412
                  8999*99**999999999998887766 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4.8
                  SSHHHHH CS
        HEAT   12 pspeVRe 18  
                  ps++VR 
  CDO70270.1 1688 PSWKVRL 1694
                  79****7 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 9.8e-06
                  HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgala 28  
                   +++++l D+  eVRe+Aa +L  ++
  CDO70270.1 1721 EVICRCLDDEVVEVREMAATTLSGIL 1746
                  689*******************9886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.66     2e+03      31      59 ..     514     539 ..     507     548 .. 0.74
   2 ?   -0.5   0.0      0.56   1.7e+03      14      26 ..     719     731 ..     714     755 .. 0.59
   3 ?   -3.8   0.0         6   1.8e+04      13      25 ..    1327    1339 ..    1325    1344 .. 0.60
   4 ?    0.5   0.0      0.27   7.9e+02      32      55 ..    1384    1407 ..    1371    1422 .. 0.69
   5 ?    9.0   0.0    0.0006       1.8      11      70 ..    1687    1760 ..    1677    1763 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.66
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaig 59 
                 +a+paL  l+e++      a+++aLga++
  CDO70270.1 514 RAVPALEALVETHR---TIAVIKALGAVA 539
                 67888888887665...478888888876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.56
      HEAT_2  14 pevrraairaLgr 26 
                 ++vr +a+ra+ +
  CDO70270.1 719 QNVRSNAVRAIHQ 731
                 4677777777762 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6
      HEAT_2   13 dpevrraairaLg 25  
                  + + + +airaL+
  CDO70270.1 1327 NSDDAVEAIRALA 1339
                  5566666666666 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.27
      HEAT_2   32 alpaLvellededpavRraaaeaL 55  
                  + p++ el+ d d + +raaae +
  CDO70270.1 1384 LKPIIEELIADNDKNKQRAAAEFI 1407
                  456666677777777777777654 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0006
      HEAT_2   11 dpdpevrraairaLg........rignp...ealpaLvellededpavRraaaeaLg...aigdpealpaLkel 70  
                   p+++vr +++             i +    e ++ + ++l+de  +vR++aa++L+   ++   +++ aLk++
  CDO70270.1 1687 FPSWKVRLKILPLVQvfyfrqsfLISDAklvEMVEVICRCLDDEVVEVREMAATTLSgilRLSPRRSIIALKDR 1760
                  56777777777777766444433222224446699999******************843333568899999987 PP

>> HD_assoc  Phosphohydrolase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.44   1.3e+03      23      55 ..     714     746 ..     694     751 .. 0.79
   2 ?   12.1   0.0   7.3e-05      0.22      38      81 ..    1368    1410 ..    1334    1414 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.44
    HD_assoc  23 yrhpevqreeekarriireLfealle.dperllp 55 
                 y ++ +q+++++a r i++L+e  ++ +p++ l+
  CDO70270.1 714 Y-DYATQNVRSNAVRAIHQLVECVANaNPQKTLD 746
                 3.5788999*************996636777765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.3e-05
    HD_assoc   38 iireLfealledperllpeefrarleaaeddaraRvVcDyiAgm 81  
                  +++ +f++l + p ++l++ +++ ++++++ +++R+ +++iAgm
  CDO70270.1 1368 CVKSIFQLLDDAPFEALKPIIEELIADNDK-NKQRAAAEFIAGM 1410
                  7999******************99977776.************* PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.4   1.3e+04      27      39 ..     720     732 ..     719     733 .. 0.80
   2 ?   -3.5   0.0       4.4   1.3e+04       2      20 ..     858     876 ..     857     883 .. 0.88
   3 ?   10.0   0.0   0.00024      0.72      14      39 ..    1720    1745 ..    1715    1747 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHH CS
         Arm  27 evqeeAawALsNL 39 
                 +v+ +A++A+  L
  CDO70270.1 720 NVRSNAVRAIHQL 732
                 6899999999765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.4
                 HHHHHHHHHTTHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrL 20 
                 ++n +++   G ++ Lv+L
  CDO70270.1 858 EGNPQLMFAEGLLDSLVAL 876
                 5799999999****99998 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00024
                  HHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   14 vppLvrLLssedeevqeeAawALsNL 39  
                  v++ +r+L++e +ev+e Aa++Ls +
  CDO70270.1 1720 VEVICRCLDDEVVEVREMAATTLSGI 1745
                  8999*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 11753.54
//
Query:       CDO70271.1  [L=329]
Description: hypothetical protein BN946_scf184942.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.7   0.1       0.38   11.1   0.0    1.9  2  DUF2524   Protein of unknown function (DUF2524)


Domain annotation for each model (and alignments):
>> DUF2524  Protein of unknown function (DUF2524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.38      13      71 ..     234     291 ..     228     298 .. 0.83
   2 ?   -4.1   0.0         1   1.8e+04      49      57 ..     316     324 ..     314     327 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
     DUF2524  13 kceqaieeaeeqfeeakrqehyndeeYteAqlkLEeavneLeklaksandqQreqLeRa 71 
                 ++ +    a++ f + +r   ++ +++++A l+LE + + L++l +   d+ re +eR+
  CDO70271.1 234 RAPDLTPVAHKLFLSPNRESIFDGTQFSHAELQLETLEKSLATLREL-QDDGREYVERL 291
                 56666677889999999**************************9765.67788888886 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1
     DUF2524  49 avneLekla 57 
                 a++eL+++a
  CDO70271.1 316 AIQELQDVA 324
                 455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2498.76
//
Query:       CDO70272.1  [L=1580]
Description: hypothetical protein BN946_scf184942.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.054   13.3  16.6       0.13   12.1  16.6    1.5  1  ERM         Ezrin/radixin/moesin family
       0.78    9.3   6.5        1.3    8.6   6.5    1.3  1  HAUS6_N     HAUS augmin-like complex subunit 6 N-terminus
        8.3    5.7  14.1         15    4.9  14.1    1.4  1  GBP_C       Guanylate-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  16.6   2.1e-05      0.13      44     116 ..     579     648 ..     547     700 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
         ERM  44 raeeeaelLeqkaaeaeeeiqrlkesaekeeeeke..klerklreaeleaarleeeserkeeeaerLkeeleear 116
                  +    e+ ++ a++a +e +rl++++e+ee+eke  +  rk++e e++++ +eee+ r e+e+    +  eea+
  CDO70272.1 579 DL----EEVSKAAMHAAAERARLRRQQEEEEREKErqRARRKAAELEARIKAMEEEKAR-EREKAAADKTREEAE 648
                 33....45678889999999999988888766555116778888888889998888765.333332222222222 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.5   0.00022       1.3     112     200 ..     545     640 ..     541     680 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00022
     HAUS6_N 112 lsfssfVlkkvlkeksk..........klalevreaaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelka 200
                 l++  f l +++ ++            +l+  ++++ + +++ ++++ ++ r+++++  +e +++   rq+ +++a++le +++++++e+++  ++  a
  CDO70272.1 545 LVLGLFPLSELMDRRRRnlvnslrhqqSLNAPIVDLEEVSKAAMHAAAERARLRRQQEEEEREKE---RQRARRKAAELEARIKAMEEEKAREREKAAA 640
                 55555555566655555555555553334444444444445455555555555555555555555...9*****************9999983332221 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  14.1    0.0025        15     206     278 ..     580     650 ..     558     672 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0025
       GBP_C 206 ieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerllekklkeqeell 278
                  e++ + a  a ae+++l+  +++ee++ e+++++ + ++++L+ ++++ +e++++e e++++ k++e++e++
  CDO70272.1 580 LEEVSKAAMHAAAERARLR--RQQEEEEREKERQRARRKAAELEARIKAMEEEKAREREKAAADKTREEAEVV 650
                 4444444445555555555..555555556666777889999*************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1766  (0.0984996); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.38u 0.34s 00:00:01.72 Elapsed: 00:00:00.51
# Mc/sec: 9314.51
//
Query:       CDO70273.1  [L=416]
Description: hypothetical protein BN946_scf184942.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-70  235.4   0.2    8.5e-70  234.4   0.1    1.6  2  ATP-grasp_2   ATP-grasp domain
    3.3e-26   91.9   0.0    5.7e-26   91.2   0.0    1.4  1  Ligase_CoA    CoA-ligase
    2.5e-12   46.8   0.0    1.1e-11   44.6   0.0    1.8  2  ATP-grasp_5   ATP-grasp domain
    6.1e-06   26.1   0.1     0.0025   17.6   0.0    2.3  2  GARS_A        Phosphoribosylglycinamide synthetase, ATP-grasp
  ------ inclusion threshold ------
      0.081   12.7   0.0       0.17   11.6   0.0    1.6  1  Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.1   2.4e-73   8.5e-70       2     201 ..      25     232 ..      24     233 .. 0.98
   2 ?   -2.6   0.0      0.93   3.3e+03     151     172 ..     379     400 ..     362     415 .. 0.65

  Alignments for each domain:
  == domain 1  score: 234.4 bits;  conditional E-value: 2.4e-73
                  E-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCT.......TCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE CS
  ATP-grasp_2   2 lhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKa.......gGvklvkskeeakeaakellgkelvtkqtgkeGkkv 92 
                  +hEyq+ ++l++yg+++p++  a+++eea eaak+++++ +v+KaQvlaGGRGK+       gGv++v+++e+ak++a++++g++l+tkqtg++G+++
   CDO70273.1  25 IHEYQSVNLLNSYGIPTPKSIAAKTPEEAFEAAKQFSSTGCVIKAQVLAGGRGKGhfdnglqGGVHVVQNPEQAKDYASKMIGAKLITKQTGAAGRIC 122
                  8************************************************************************************************* PP

                  --EEEEE---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CH.HHHHHHHHHHHHHHHHHH CS
  ATP-grasp_2  93 ekvlveealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklgleke.lvkkaakiikklyklfve 189
                  ++v+++e+ d ++E+Y++++ Dr+  ++v++aS++GG++iEevaak P++ii ++id  +gl++++a ++ak+lg+++e ++++aa+i+ +lyk+f++
   CDO70273.1 123 NAVMLAERRDPSHEYYVAVLNDRNIGGPVLVASAQGGMNIEEVAAKDPKAIITTPIDFDNGLSKAEALDLAKRLGFKSEgAQNEAADIFIRLYKIFKD 220
                  ****************************************************************************997367899************* PP

                  TTEEEEEEEEEE CS
  ATP-grasp_2 190 ldatlvEiNPLv 201
                  +dat++EiNPL 
   CDO70273.1 221 KDATQIEINPLG 232
                  **********96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.93
                  TTB--HHHHHHHHHHCT--CHH CS
  ATP-grasp_2 151 akglkeeqareiakklglekel 172
                   kg ke +a+e++++ gl+   
   CDO70273.1 379 LKGTKEPEAKEMIRQSGLKIIP 400
                  5677777788888887776533 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   1.6e-29   5.7e-26       1     153 []     292     412 ..     292     412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1.6e-29
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 lvnG++La+++md++ ++              g+++++++d+G++a+          p+++ +a+++l++dp+vk i+++i++G+++++++a+++++a+
  CDO70273.1 292 LVNGAGLAMATMDVLALH--------------GGNPANFLDVGGGAT----------PETVKKAFEILVSDPKVKSIFINIFGGIMRCDYIAEGVINAA 366
                 79****************..............***************..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraakav 153
                 ke+     ++p+++r+ Gt+++     e++++++++g++i++ ++ +++a+ av
  CDO70273.1 367 KELS---LKVPLIVRLKGTKEP-----EAKEMIRQSGLKIIPFDDLDEAAQNAV 412
                 ***8...***************.....********************9998775 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.2e-15   1.1e-11      10     220 ..      25     246 ..      14     247 .. 0.81
   2 ?   -0.8   0.0      0.25   8.8e+02      11      39 ..     383     408 ..     380     415 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 3.2e-15
  ATP-grasp_5  10 Lteaeakelleaygipvvetrlassaeeaveaaeeigyp.vvlKivs......pdilhKtdvgGvrlnlkdaeevraaaeeiler.vkekspearieg 99 
                    e+++ +ll+ ygip+++++ a+++eea eaa+++    +v+K ++      ++       gGv++ ++++e+ ++ a++++ + + +k+ +a  + 
   CDO70273.1  25 IHEYQSVNLLNSYGIPTPKSIAAKTPEEAFEAAKQFSSTgCVIKAQVlaggrgKGHFDNGLQGGVHV-VQNPEQAKDYASKMIGAkLITKQTGAAGRI 121
                  46888999****************************8888*****997666555566788899****.*********999988641444444433333 PP

  ATP-grasp_5 100 vlVqem.akr..ggrElivgvteDpvFG.pvilf.GlGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrlsqLv 192
                  +  + m a+r   ++E  v v +D   G pv++   +GG+ +e ++    +    +  +  + +++ +a  l+k+   +++   ++ +++ +rl ++ 
   CDO70273.1 122 CNAV-MlAERrdPSHEYYVAVLNDRNIGgPVLVAsAQGGMNIEEVAAKDPKAIITTPIDFDNGLSKAEALDLAKRLGFKSEGAQNEAADIFIRLYKIF 218
                  3322.23444479***********9885388766156**********99999999999999999999999999998888888888999********** PP

  ATP-grasp_5 193 vdlpeIreldinPllveeeg.vvalDari 220
                   d +  ++++inPl  +++g v+++Da++
   CDO70273.1 219 KD-KDATQIEINPLGETSDGhVLCMDAKV 246
                  **.999************999*****997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
  ATP-grasp_5  11 teaeakelleaygipvvetrlassaeeav 39 
                  +e eake++++ g++++++   ++   a+
   CDO70273.1 383 KEPEAKEMIRQSGLKIIPFDDLDE---AA 408
                  689*************99854433...33 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07    0.0025       8      53 ..      32      77 ..      27      81 .. 0.95
   2 !    6.2   0.0    0.0023       8.1      21     108 ..      90     176 ..      85     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7e-07
                HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT- CS
      GARS_A  8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKg 53
                +ll+ +gipt++  a + peea e  +++++ ++V+Ka+ la+g+g
  CDO70273.1 32 NLLNSYGIPTPKSIAAKTPEEAFEAAKQFSSTGCVIKAQVLAGGRG 77
                7999***************************************998 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0023
                 EEESSHHHHHHHHHHHSSSEEEEEESC-GGG..T-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEEECTTEEEE- CS
      GARS_A  21 eaftdpeeakeyieeatakalVvKadglaag..KgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllalvdgktvkpl 108
                 +++++pe+ak+y +++    l+ K+ g a+     v++a+ ++ + ++   +l++++ G     v++ +   G  +  +a  d k ++++
  CDO70273.1  90 HVVQNPEQAKDYASKMIGAKLITKQTGAAGRicNAVMLAERRDPSHEYYVAVLNDRNIG---GPVLVASAQGGMNIEEVAAKDPKAIITT 176
                 5789***********99999999*999776322689999999************99999...7899988888888888888777777665 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.9e-05      0.17       2      98 ..     287     389 ..     286     409 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.9e-05
  Succ_CoA_lig   2 GkialisqSGalalalldwaasrglgfskvvslGn.eadvdvadlleylaedpetkvillyl.Esird....grkflsaarraarkkpvvvlksGrs 92 
                   G+i+ +    +la+a +d +a +g + ++++ +G  ++  +v+  +e l +dp++k+i++ +  +i +    ++  ++aa++++ k+p++v   G++
    CDO70273.1 287 GNIGCLVNGAGLAMATMDVLALHGGNPANFLDVGGgATPETVKKAFEILVSDPKVKSIFINIfGGIMRcdyiAEGVINAAKELSLKVPLIVRLKGTK 383
                   8999999999***********************9945557899***************99763567667888999************9999888877 PP

  Succ_CoA_lig  93 eagara 98 
                   e  a+ 
    CDO70273.1 384 EPEAKE 389
                   766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 2199.12
//
Query:       CDO70274.1  [L=547]
Description: hypothetical protein BN946_scf184942.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-83  278.1   0.0    1.5e-82  277.5   0.0    1.3  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.5   0.0   8.5e-87   1.5e-82       1     304 [.      33     323 ..      33     326 .. 0.92

  Alignments for each domain:
  == domain 1  score: 277.5 bits;  conditional E-value: 8.5e-87
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp++p R++ + +sl  ++gl +++e ++++++atk e++++Hs+eY+e+l++++    ++  +ke   ++++   + dd+pv++++++++ +++g
     CDO70274.1  33 HPMKPTRIR-MCHSLVMNYGLYKRME-IFRAKPATKREMTQFHSDEYVEFLSRITPVNMNSF-VKE--QHKYN---VGDDCPVFDGLFDYCAISAG 120
                    89*******.99999999***99888.5*************************996655543.333..33333...5799**************** PP

                    HHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-H..HHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTS CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNn..vaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegif 189
                    +++e++ ++ ++  k++++++  ++ HHak+seasGFC+vN   ++++i +l +   ++rv+++DvDvHhG+G+eeafy +++v+t+S+H+y++ f
     CDO70274.1 121 GSMEGAARLSRD--KCDIAVNwAGGLHHAKKSEASGFCYVNGmyIVLGILELLR--YHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-F 211
                    **********99..9**************************8224556666666..357********************************966.* PP

                    TTSS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.EEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 190 yPgtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkvvl 285
                    +Pgtg+l d+g gkgk ++ln+pl++g+++e+y +vfe ++r+v+e ++P ++++++G+D+l+gd+lg +nls++g+++++k ++++ +   +++l
     CDO70274.1 212 FPGTGELRDVGIGKGKYYALNFPLRDGITNENYKSVFEPVIRQVMESYDPGAVVLQCGTDSLSGDKLGCFNLSMRGHANCVKFVKSFNK---PLLL 304
                    ****************************************************************************************9...99** PP

                    EE-S---HHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 286 lleGGYnlealaravtavl 304
                    +++GGY++++++r++++ +
     CDO70274.1 305 VGGGGYTMRNVSRCWAYET 323
                    ***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 3202.34
//
Query:       CDO70275.1  [L=280]
Description: hypothetical protein BN946_scf184942.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00053   20.0   5.9    0.00053   20.0   5.9    2.9  3  XPA_N           XPA protein N-terminal


Domain annotation for each model (and alignments):
>> XPA_N  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.29   5.2e+03      13      22 ..      86      95 ..      85      96 .. 0.86
   2 !   20.0   5.9     3e-08   0.00053       2      31 ..     147     176 ..     146     177 .. 0.95
   3 !    2.6   0.1    0.0077   1.4e+02      23      28 ..     266     271 ..     264     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.29
       XPA_N 13 dSyLldnFdy 22
                dS L + F+y
  CDO70275.1 86 DSRLGKYFEY 95
                8999999999 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3e-08
       XPA_N   2 pkCdeCgkefldSyLldnFdysVCDkCRDk 31 
                 p+C eC++   d+ + + F++ VC+kC++ 
  CDO70275.1 147 PRCNECNSVDIDQTYKKVFGCLVCNKCKNE 176
                 89**************************86 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.0077
       XPA_N  23 sVCDkC 28 
                 +VC++C
  CDO70275.1 266 QVCHEC 271
                 688888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1976  (0.110213); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1663.08
//
Query:       CDO70276.1  [L=248]
Description: hypothetical protein BN946_scf184942.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-24   85.6   0.3    7.7e-11   42.7   0.2    2.0  2  4HBT_3         Thioesterase-like superfamily
    1.1e-05   25.3   0.0      0.019   14.8   0.0    2.5  2  Acyl_CoA_thio  Acyl-CoA thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.2   8.6e-15   7.7e-11       6      55 ..      34      87 ..      30      89 .. 0.88
   2 !   42.3   0.0   1.2e-14     1e-10      72     203 ..      88     237 ..      86     248 .] 0.67

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 8.6e-15
                ECTTC...-HHHHHHHHHHHHHHT.-S.SS..EEEEEEE-S---SE.EEEEEEEE CS
      4HBT_3  6 tpgga.g.yGGyvlAlalraaqrtvpdprl..hslhvyFlrpgdag.pviyhver 55
                 p++a g +GG+v+++al aa   v dp +  hslh+yFl+ ++a+ p++y v+r
  CDO70276.1 34 LPPRArGvFGGQVISQALVAANNCV-DPAFslHSLHCYFLLSASAAvPILYNVDR 87
                67788877*****************.454667*********************98 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 1.2e-14
                 TTEEEEEEEEEEE---T......---EE-------.GGGE---...........--SSGGGSGG.......TEE.EE-HHT---S.......S-EEEEE CS
      4HBT_3  72 ggrpiftatasfgraestgwe..lepaaapppvpppdeaalaad..........eaplplfrrv.....pgfle.pfeprpaeggkpdspagpkrvrqW 152
                 +gr+if +++sf+r+e+ + +  l+   +pp+vp+pd+++ ++           +a+ ++   +     +++ + p+e + a    ++s++g +    W
  CDO70276.1  88 RGRTIFLMLCSFQRPEPRQPTfqLP---MPPNVPSPDDCEGTEViyerlfketnDAKVKE---FcltmlEERRRsPIEVKLAG--VRESEDGVPIHLYW 178
                 79**************844443133...4899*******664435544444333222222...12333433444466666552..234778889999** PP

                 EEET....TTS-SSHHHHHHHHTT-......-GGGGTSS-......SB--EEEEEEEE-S CS
      4HBT_3 153 vrlr....eggepahlaaLaylsDs.f....pvprvhglrldaeasgwmpsldltiyfhr 203
                  ++r      + +++ + L y+sDs f    + + +++  + + ++ +  sld++i f++
  CDO70276.1 179 HKARntpvRYDAAFQKCILSYISDSqFaarrT-LIHFNQGKNPTKVVMQTSLDHNISFYE 237
                 ****66443334777888********976644.66666665555589***********97 PP

>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00028       2.5      18      59 ..      37      70 ..      26      91 .. 0.80
   2 !   14.8   0.0   2.1e-06     0.019      34      86 ..     178     236 ..     149     241 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00028
                   SSSBTTCHHHHHEECCCCCCCCTS-TTHCCCCCHHHHHTTSS CS
  Acyl_CoA_thio 18 elkrefgGqvvaekqsllrakktvPddallhsvllaYlSDlt 59
                     + +fgGqv++  q+l++a++ v   + lhs+        +
     CDO70276.1 37 RARGVFGGQVIS--QALVAANNCVDPAFSLHSLH------CY 70
                   36789*******..********998888888873......33 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.1e-06
                    CCCCCC.TS-TTHCCCCCHHHHHTTSSSGGGGGGGGT.....TTSTTEEEEEEEEEEE- CS
  Acyl_CoA_thio  34 llrakk.tvPddallhsvllaYlSDltllltalttHe.....lledslqvsldHsvyFl 86 
                    + +a++  v  da  ++++l Y+SD+++       H       ++  +q sldH + F 
     CDO70276.1 178 WHKARNtPVRYDAAFQKCILSYISDSQFAARRTLIHFnqgknPTKVVMQTSLDHNISFY 236
                    66665536669****************98765555544366555667888****99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.50
# Mc/sec: 1504.88
//
Query:       CDO70277.1  [L=83]
Description: hypothetical protein BN946_scf184942.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-29  100.7   1.7      3e-29  100.5   1.7    1.1  1  Ribosomal_S27e  Ribosomal protein S27
     0.0073   15.8   1.6      0.011   15.2   1.6    1.3  1  TF_Zn_Ribbon    TFIIB zinc-binding
  ------ inclusion threshold ------
      0.058   13.6   0.5      0.079   13.2   0.5    1.2  1  IBR             IBR domain, a half RING-finger domain
       0.12   12.4   1.4        1.8    8.5   1.4    2.3  1  zinc_ribbon_4   zinc-ribbon domain
       0.12   12.6   4.9       0.18   11.9   2.2    2.0  2  DUF678          Protein of unknown function (DUF678)
       0.18   11.8   2.3        0.3   11.1   2.3    1.3  1  Prok-RING_1     Prokaryotic RING finger family 1
       0.19   11.7   5.0       0.18   11.8   3.5    1.8  2  zf-C2HC5        Putative zinc finger motif, C2HC5-type


Domain annotation for each model (and alignments):
>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   1.7   1.2e-32     3e-29       1      55 []      28      82 ..      28      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.2e-32
                    -S--EEEEE-TTTS-EEEEESS-SS-EEESSSTCEEEEECSSSEEESSCEEEEES CS
  Ribosomal_S27e  1 prskFldvkCpdCenetvvFshaatvvkCisCgkvLvePtGGkaklkaqilerlk 55
                    p+s+F+dvkCp+C+++t+vFsha+tvv+C  Cg+vL++PtGGka+l+++ ++r+k
      CDO70277.1 28 PNSYFMDVKCPGCFAITTVFSHAQTVVLCAACGSVLCQPTGGKARLTEGSSYRRK 82
                    89************************************************99986 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.6   4.4e-06     0.011       2      29 ..      36      63 ..      35      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.4e-06
                  EETTTTCEECHEETSTTCEEESSSSBEE CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVl 29
                  kCP C   ++v+ ++++ ++C +CG+Vl
    CDO70277.1 36 KCPGCFAITTVFSHAQTVVLCAACGSVL 63
                  9******889*****************8 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   3.1e-05     0.079       7      49 ..      20      64 ..      15      69 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
         IBR  7 klkksles.dpn...lkwCprpdCeaiiekseg.cksvtCskCgfefC 49
                klk+ ++s + +    ++Cp  +C ai    ++ ++ v C+ Cg   C
  CDO70277.1 20 KLKRLVQSpN-SyfmDVKCP--GCFAITTVFSHaQTVVLCAACGSVLC 64
                6677666633.2455589**..***99988888455577******999 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.4   0.00071       1.8       1      33 [.      33      61 ..      33      63 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00071
  zinc_ribbon_4  1 MkitCpsCkakyeiddeklpakgvkvrCskCgh 33
                   M++ Cp C a  ++ +     + + v C++Cg 
     CDO70277.1 33 MDVKCPGCFAITTVFS----HAQTVVLCAACGS 61
                   999*****87766644....6778888888876 PP

>> DUF678  Protein of unknown function (DUF678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12   3.1e+02       7      31 ..      13      40 ..       9      51 .. 0.66
   2 ?   11.9   2.2   7.1e-05      0.18      54      70 ..      49      65 ..      40      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
      DUF678  7 kkkrrkrkpkttvededdc...tTCSlC 31
                +  +r++k k  v+ +++    + C  C
  CDO70277.1 13 ESEKRRHKLKRLVQSPNSYfmdVKCPGC 40
                4555777777778877665455566555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.1e-05
      DUF678 54 gkgntlrCaACgSsLtl 70
                 +++++ CaACgS+L++
  CDO70277.1 49 HAQTVVLCAACGSVLCQ 65
                5678899********96 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.3   0.00012       0.3       4      28 ..      34      61 ..      31      65 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
  Prok-RING_1  4 gkkCpvC...gkelkeedDiVvCpeCgt 28
                 + kCp C      +++++ +V C +Cg+
   CDO70277.1 34 DVKCPGCfaiTTVFSHAQTVVLCAACGS 61
                 67999995555789*************7 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   4.1e+03       9      16 ..      17      24 ..      15      29 .. 0.75
   2 ?   11.8   3.5   7.1e-05      0.18       4      33 ..      40      69 ..      34      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
    zf-C2HC5  9 trHpLlea 16
                +rH+L  +
  CDO70277.1 17 RRHKLKRL 24
                79999765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.1e-05
    zf-C2HC5  4 CnCqatrHpLleaapnClnCGkiiCakegl 33
                C+   t    ++++ +C +CG ++C+  g 
  CDO70277.1 40 CFAITTVFSHAQTVVLCAACGSVLCQPTGG 69
                5555555556678999*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.47
# Mc/sec: 533.28
//
Query:       CDO70278.1  [L=339]
Description: hypothetical protein BN946_scf184942.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-17   61.6   0.0    2.9e-16   59.3   0.0    2.1  2  BTG       BTG family


Domain annotation for each model (and alignments):
>> BTG  BTG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.6e-20   2.9e-16       6     111 ..      16     120 ..      12     127 .. 0.91
   2 ?   -1.4   0.0      0.11     2e+03      90     103 ..     280     293 ..     232     305 .. 0.68

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.6e-20
                 HHHHHHHHTTTBT..TB-HHHHHHHHHHHHHHHHHHHHTT--TTSTTTTHHHH-E....ETTT-THHHHHHHCTT--HHHHHHHS-T.TEEEEEETTEE CS
         BTG   6 aaavnFlvsllkkskklerekveaFaeeLeelLeerykehWypekPerGsayRcirinkkekldpvlekaaeesglsveeleellpe.eltlwvDPgeV 103
                 a a+ ++++ l +  + +   + +++  Le+ L+++++ +W p++P rGs+ Rc++ +      + +++a++++g++++e+ +ll + e+ l++DPg+V
  CDO70278.1  16 AHAITYITRPLIA--RYSAVTIIKLQLALEANLTAQFTPSWLPSEPLRGSGRRCLTLSPFGVPPRSVYNACKSAGVEWSEWIALLGNfEFDLFIDPGCV 112
                 6899999999999..99999************************************999555555******************998659********** PP

                 EEECTTTT CS
         BTG 104 svrigeeg 111
                 s+r+g++g
  CDO70278.1 113 SIRFGAGG 120
                 *****876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.11
                 S-TTEEEEEETTEE CS
         BTG  90 lpeeltlwvDPgeV 103
                   ++  ++vDP++ 
  CDO70278.1 280 RARQARVFVDPSKN 293
                 45677899999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2427.50
//
Query:       CDO70279.1  [L=379]
Description: hypothetical protein BN946_scf184942.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-21   75.5   0.2    1.2e-20   73.4   0.0    2.1  2  BATS         Biotin and Thiamin Synthesis associated domain
    3.9e-17   63.1   0.0    7.3e-17   62.2   0.0    1.4  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.21   1.9e+03      20      40 ..     121     141 ..     111     182 .. 0.80
   2 !   73.4   0.0   1.3e-24   1.2e-20       1      86 []     249     340 ..     249     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
                 HHHHSTTSECCCTCHH-HHHH CS
        BATS  20 lRlllPkagillsgResaefr 40 
                 +R+++  a + lsgR++  +r
  CDO70279.1 121 TRFCMGAAWRDLSGRKRGFER 141
                 677888888888888876665 PP

  == domain 2  score: 73.4 bits;  conditional E-value: 1.3e-24
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT-E CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGle 86 
                 ++++l+pik+tpl           l++i ++R++lP +  +l++gR++ ++ +q +++++Gan++++g++       +ltt+++ ++ed +m++++Gle
  CDO70279.1 249 PVNALVPIKGTPLennepvpyqtiLRTISTARIVLPATIiRLAAGRQTLDETQQaMCFMAGANAVFTGEQ-------MLTTPCSPWDEDKAMMARWGLE 340
                 89*******************************************************************8.......********************86 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   8.1e-21   7.3e-17       4     161 ..      77     232 ..      74     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 8.1e-21
                  ESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS...TTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilgggeplly...pdfvellerlaklavpgiritvetngtlpdeeklerl 97 
                  t gC+ +C +C++++    +++ +r +++e +le ++++k  +g   + +g    +l    + f+++l + +++  +g+ + v t  +++++e+++ l
   CDO70279.1  77 TGGCSEDCAYCSQSSRyATPTKASRLVDIEPVLEAARKAK-ANGSTRFCMGAAWRDLSgrkRGFERILTMVREI--RGMGMEVCTTLGMLSPEQARQL 171
                  78************999999*******************5.778777777755555554555566666666666..8********************* PP

                  HHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeele 161
                  +e+g++ ++++l++  +  + + +  + +++++le++ + r+agi  v+++ +++ Ge+d++++
   CDO70279.1 172 KEAGLTAYNHNLDTSREY-YPEVI-TTRSYDDRLETIAAVRDAGIS-VCSGGILGLGETDKDRV 232
                  ******************.*****.99*******************.9999999999***9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.86
# Mc/sec: 1333.53
//
Query:       CDO70280.1  [L=195]
Description: hypothetical protein BN946_scf184942.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-50  171.1  14.1    1.6e-49  168.5   9.2    1.9  2  BCAS2     Breast carcinoma amplified sequence 2 (BCAS2)


Domain annotation for each model (and alignments):
>> BCAS2  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   9.2   8.7e-54   1.6e-49       2     161 ..      14     169 ..      13     169 .. 0.94
   2 !    9.6   0.2   3.9e-05       0.7     181     204 ..     166     189 ..     166     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 168.5 bits;  conditional E-value: 8.7e-54
       BCAS2   2 vvDaLPYiDaele.tpelreaveklieeElrrsrkkksdlaelPppkeeklespllaaeleRveageplealDlsRYeleaPsaekkedleaweealrn 99 
                 v+D+LPY+D+ele  p l+e+ve+++++E +   ++++ ++++Pp ++   + p+l+aeleRv++++pl++lD+sRY+l+aPs+   e++e+w eal+n
  CDO70280.1  14 VFDSLPYYDNELEqYPILKEKVERELAREGK---PQQTLHPRVPPAPTLFANDPMLQAELERVSNHQPLPPLDTSRYQLPAPST--PENEEEWLEALKN 107
                 79***********99**************54...4444599****995544*******************************85..689********** PP

       BCAS2 100 akaqlehqalRqeNleLlekygknaWrvhneqleaelkklekeleetkeeieevnrqRkseQ 161
                 a+aqlehq+lRq+Nl+Ll++yg+naWr+hn+  ea +k++ek+le++k+ + evnr+Rk+ Q
  CDO70280.1 108 ARAQLEHQHLRQTNLSLLHQYGPNAWRIHNYLNEASAKNVEKALEDLKNLTVEVNRERKNFQ 169
                 ***********************************************************987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 3.9e-05
       BCAS2 181 knleieaaceeleaeieelkrqaa 204
                 kn +ie+a+++le ei++l++++ 
  CDO70280.1 166 KNFQIEMANVALEVEIDRLNKREV 189
                 799*****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1342.22
//
Query:       CDO70281.1  [L=274]
Description: hypothetical protein BN946_scf184942.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-44  151.8   0.0    1.7e-44  151.3   0.0    1.2  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s
  ------ inclusion threshold ------
      0.078   13.1   0.0       0.19   11.9   0.0    1.6  1  DUF2087         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0     2e-48   1.7e-44       3     121 ..      94     213 ..      92     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 2e-48
                     --HHHHHHHHHHHHH...TT--EEEEEEEEETT..SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCTTS CS
  Complex1_30kDa   3 vepedllevakflkdeeelgfdvlsdltavDek..eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfegh 95 
                     + p+ +++v++fl+d+++++f+ ++d+++vD +  e+rfevvyhlls++   rirvk++++e +  vpS++ +f+gadwyERE++D+fG+ f++h
      CDO70281.1  94 ICPSGVVPVLTFLRDHSQCQFKSVMDISGVDFPerEKRFEVVYHLLSVKYASRIRVKTYANEVDA-VPSAMAVFNGADWYEREVWDLFGVFFKDH 187
                     66788999***********************55669**********************9955455.***************************** PP

                     STSS-SSSSTTSSS-TTSTTS----- CS
  Complex1_30kDa  96 pdlrrillpedfeghPLRkdfplsge 121
                     pdlrril++++feghPLRkdfplsg+
      CDO70281.1 188 PDLRRILTDYGFEGHPLRKDFPLSGY 213
                     ***********************997 PP

>> DUF2087  Uncharacterized protein conserved in bacteria (DUF2087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.19      26      57 ..     168     199 ..     162     199 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
     DUF2087  26 greysEkevneiLkevhdDhatlRReLvdagl 57 
                 g+++ E+ev ++   +++Dh  lRR L d+g+
  CDO70281.1 168 GADWYEREVWDLFGVFFKDHPDLRRILTDYGF 199
                 77889*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1771.75
//
Query:       CDO70282.1  [L=432]
Description: hypothetical protein BN946_scf184942.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-60  205.7   6.2      6e-58  196.9   0.2    2.3  2  DUF5427   Family of unknown function (DUF5427)


Domain annotation for each model (and alignments):
>> DUF5427  Family of unknown function (DUF5427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.2   3.4e-62     6e-58       1     402 [.      13     377 ..       2     381 .. 0.71
   2 !   11.0   1.9   8.6e-06      0.15     436     464 ..     382     410 ..     377     411 .. 0.93

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 3.4e-62
     DUF5427   1 lefleslpedktvkkkkkkkktkkkkkakkkdeediLaeLeeLakkesrpaTPrvksn..kskkaspkkkksaeepakeekkkeeessedk...rksve 94 
                 l+fl++l++   + + +++++ +++  +  + e +++a+++e+++k+s p  Pr +     s+  +p+ +ks+e+ +   +         +     sv 
  CDO70282.1  13 LQFLDDLDNLAPPPDAPSTAPPSAQPGN--EGEAEVFAFIDEITQKSSEP--PRSHIDrpLSRAGTPTVRKSTERVKVGIP---------TpllPGSVP 98 
                 3566666533322233333333333333..22235777777777744443..33222211222222222222222221111.........122211222 PP

     DUF5427  95 strsleasetpseees.eeqeaekkeeeeeeaeeeeadpiasgsgW.Wgsilatasaavkqaea....avkeiqtneeAkkwaeqvrg..nvgalrglg 185
                        s t+s++++ + ++a+++ e+ +++ + ++++ +   gW Wgs+++tas+a++qa++    +vk++ +ne+A+kw e v +  ++++l++l+
  CDO70282.1  99 L------SRTESSSSRvSVASAKQP-EQPRQEGQPTQSAGSVAKGWgWGSVWSTASTALQQAKSvvdeQVKNLPKNEQARKWGEGVLEyaKAAQLDKLS 190
                 2......222222222111111111.1222222222344444578889**************9977778999**************98778899***** PP

     DUF5427 186 delrtralptltellktlappisshEvLqIhithDlvnypsLdplvyekFsrvmsqVeGgdllvvqrgqesterrsseesskssagwrdgpwwrqdskr 284
                 ++ ++  l+tlt++l+ +appis+hEv q++++hD+++y+ +++lvy+ +sr+m+qVeGgdl vv+rg+es+ ++++                  d+kr
  CDO70282.1 191 QDFKRVGLSTLTDILNVVAPPISEHEVIQVWLSHDMQGYEGIESLVYRALSRIMEQVEGGDL-VVNRGDESRPKEAA------------------DNKR 270
                 *************************************************************7.68******987655..................457* PP

     DUF5427 285 dLnlvkGlvegeKLaranaesyakeyfkarggleeaakrakeelsesnpvrssdiFlaiqaisvkskkaaeekekeesevvdeneedesvsFaivlkDi 383
                 dLn+v+G + + KLa an+e+ ++   k           + +++s +np+  s ++l++q+++++ +  + +   + +++ +++++  s++F i l D+
  CDO70282.1 271 DLNAVDGYEAALKLAQANLEELIRRNAKP----------EPSTSSAQNPTTYSYVYLRVQPFTTTYQLPQVRPGADPASASEPTSQ-SSLQFLICLSDP 358
                 *********************99865544..........578899********************999556788888889999888.************ PP

     DUF5427 384 vhditfitvSQsfPlkWie 402
                  h++  +tv+Qs+P+kW++
  CDO70282.1 359 DHNMIQSTVTQSVPTKWLD 377
                 *****************86 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.6e-06
     DUF5427 436 reWVaeWieegLsLavGvvAqrYVakRMG 464
                  +WV++ + e++ ++v v+ q+Y+  RMG
  CDO70282.1 382 YDWVEDLVVEAIRIGVEVIGQEYIGSRMG 410
                 69**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2970.77
//
Query:       CDO70283.1  [L=900]
Description: hypothetical protein BN946_scf184942.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-10   39.2   1.8    9.1e-10   38.3   1.8    1.4  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   1.8   5.1e-14   9.1e-10      18      52 ..       3      36 ..       2      38 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 5.1e-14
                EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHH CS
      Chromo 18 leYlVKWkglpysentWEpeenlekcfqelideFk 52
                +eY VKW +++ +++tWEpee+l++c ++l+ +F+
  CDO70283.1  3 QEYRVKWANYDSEDDTWEPEEHLDNC-KRLLASFW 36
                59************************.99*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5830.47
//
Query:       CDO70284.1  [L=207]
Description: hypothetical protein BN946_scf184942.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-14   53.5   0.4    5.4e-14   52.5   0.2    1.6  2  Tim17     Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
       0.09   12.9   2.0        7.8    6.7   0.1    2.4  2  DUF5518   Family of unknown function (DUF5518)


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.2     6e-18   5.4e-14      10     111 .]      16     123 ..      10     123 .. 0.89
   2 ?   -2.4   0.0      0.66   5.9e+03      27      27 ..     176     176 ..     154     198 .. 0.52

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 6e-18
       Tim17  10 vlGallGavfglvkgsrradtpapsker........lreglrsvgkrgpslGknfgvvgglysgiecaleklRg.kediwnsvaAGaltGal.lragpq 98 
                 +l++l+Ga++g+v+g++ +++   +  +        ++++lr++++++ +++ n+++++ ly+++  + +k+ g ke   ++++AG+++G++ +  g +
  CDO70284.1  16 YLAILKGARNGFVYGVKVRFPH--ALIMailfgrgdWKTRLRAIYRATKQHALNLAKFVSLYKTLLLVQKKINGgKERSFDTFIAGLIGGYVvF--GDR 110
                 57899***************84..333355677777***********************************997799999************55..*** PP

       Tim17  99 aaavgaiggaafs 111
                 +a++ +i++++ s
  CDO70284.1 111 NAVNEQIVLYVCS 123
                 *********9975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.66
       Tim17  27 r 27 
                 +
  CDO70284.1 176 E 176
                 2 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1   0.00087       7.8      46      73 ..      19      46 ..      12      82 .. 0.79
   2 ?    5.7   0.4    0.0018        16      28      46 ..      92     110 ..      71     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00087
     DUF5518 46 skdgavaGalaGligaipvlvlllvlll 73
                + +ga++G++ G+ + +p ++++++l+ 
  CDO70284.1 19 ILKGARNGFVYGVKVRFPHALIMAILFG 46
                568****************777777764 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0018
     DUF5518  28 llgllvgGlvaGylaggds 46 
                  + ++++Gl+ Gy++ gd+
  CDO70284.1  92 SFDTFIAGLIGGYVVFGDR 110
                 56689********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1552.64
//
Query:       CDO70285.1  [L=166]
Description: hypothetical protein BN946_scf184942.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-38  131.6   0.3    2.3e-38  131.3   0.3    1.0  1  Ras          Ras family
    1.1e-08   35.4   0.1    1.8e-08   34.6   0.1    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    0.00036   20.1   0.0    0.00068   19.2   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0026   17.3   0.1      0.003   17.0   0.1    1.1  1  Arf          ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.016   15.1   0.0    1.2  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.3   6.4e-42   2.3e-38      26     160 ..       4     137 ..       3     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 6.4e-42
                 SSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-H CS
         Ras  26 eeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravst 124
                 ++y++Ti +d y+k++ vd++ + +e+ DTAGqee+ +lr++ +r+++g++lvy+i sr++fe+++ + + + +v++++ +++LvGnK D + +r+vst
  CDO70285.1   4 QTYDPTI-EDAYRKQLIVDDRMCFVEVIDTAGQEEYATLRDQWVREGQGFILVYSIASRATFERLEVFRQAMLKVKRQKPVFMLVGNKRDKQYEREVST 101
                 579****.*********************************************************************99******************** PP

                 HHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 125 eegeelakelglkfletSAktnenveeafeellrei 160
                 +eg + a+e++++fletSAkt+enve++f++l+r +
  CDO70285.1 102 AEGAAKAREFNCQFLETSAKTSENVEHLFKTLVRLL 137
                 ********************************9976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1     5e-12   1.8e-08      54     120 .]      23      93 ..       3      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 5e-12
                 TCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHHHHHHHHHHCSSS-E.EEEEE-TTT CS
         Roc  54 kkvklniWDtaGqerfrslhplylreaalailvyd...srssenlkeWlkelkkvagkspv.ilvgnkiDl 120
                 + + +++ DtaGqe++ +l++ ++re + +ilvy    + ++e+l+   + + kv +++pv +lvgnk D+
  CDO70285.1  23 RMCFVEVIDTAGQEEYATLRDQWVREGQGFILVYSiasRATFERLEVFRQAMLKVKRQKPVfMLVGNKRDK 93 
                 34778999**************************97644478999*9***99999999887369****995 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-07   0.00068      70     192 ..      25     137 ..       9     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-07
                 EEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE....EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    GTP_EFTU  70 ylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlalkegvp....iivfiNKmDrlkaelkeiveevkqklsrkeeklekygekg 164
                 + + +iDt G +++     + +r   g +lv ++++  +    ev+r+a  +  +    ++++ NK D+  ++   ++e + +            ++  
  CDO70285.1  25 CFVEVIDTAGQEEYATLRDQWVREGQGFILVYSIASRATFERLEVFRQAMLKVKRqkpvFMLVGNKRDKQYEREVSTAEGAAKA----------REF-- 111
                 56889*******************************************9754333454667777****8744333333333312..........222.. PP

                 TTTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 165 ekevpvvfgSalkgegvktllealvell 192
                   +++++ +Sa++ e+v++l+++lv+ll
  CDO70285.1 112 --NCQFLETSAKTSENVEHLFKTLVRLL 137
                 ..4689***************9999877 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   8.3e-07     0.003      57     172 ..      24     134 ..       2     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.3e-07
                 TEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEE CS
         Arf  57 nlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqk 155
                    ++v D  Gqe+   l +++ ++ ++ i v   a r  +e  +   +a+l+ ++ k v +l ++NK D +     +e++++ g  + + + + +  +
  CDO70285.1  24 MCFVEVIDTAGQEEYATLRDQWVREGQGFILVYSIASRATFERLEVFRQAMLKVKRQKPVFML-VGNKRDKQYE---REVSTAEGAAKAR-EFNCQFLE 117
                 4456899***********************999999999999999999999999988777655.69****9875...5666666666666.66789999 PP

                 EBTTTTBTHHHHHHHHH CS
         Arf 156 csavkgeglkeglewls 172
                 +sa + e++++ ++ l+
  CDO70285.1 118 TSAKTSENVEHLFKTLV 134
                 99999999999998887 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.4e-06     0.016      20      97 ..      53     133 ..      29     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
                  EEEEESTTT.T--HHH.HHHHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  20 livvslkep.elslnl.ldrfLvlaeekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkell 97 
                  ++v s+++  +++      ++++ +++++   ++v nK D   e+e ++ e +++ +++++++l +sakt+e++e+l + l
   CDO70285.1  53 ILVYSIASRaTFERLEvFRQAMLKVKRQKPVFMLVGNKRDKQYEREvSTAEGAAKAREFNCQFLETSAKTSENVEHLFKTL 133
                  667776643144443304456788888888889999*****99999778888999*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1153.17
//
Query:       CDO70286.1  [L=228]
Description: hypothetical protein BN946_scf184942.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.5   0.0       0.24   10.9   0.0    1.2  1  ACOX      Acyl-CoA oxidase


Domain annotation for each model (and alignments):
>> ACOX  Acyl-CoA oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.3e-05      0.24      58     103 ..     138     186 ..     133     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHTC...SSTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTSS-H CS
        ACOX  58 lksfvekles...lseelkevLkkLckLyalstiekhlgdflesgylsp 103
                 l+++v+++++   l+++l+ +L +L++L++ +  + ++ ++l+sg++++
  CDO70286.1 138 LRRLVDRINDpalLDKDLSAALMELAALFGSQHTSVSSFELLQSGVING 186
                 78899999888889*******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1790.41
//
Query:       CDO70287.1  [L=102]
Description: hypothetical protein BN946_scf184942.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.043   13.8   0.0      0.045   13.7   0.0    1.1  1  AbiEii    Nucleotidyl transferase AbiEii toxin, Type IV TA sy


Domain annotation for each model (and alignments):
>> AbiEii  Nucleotidyl transferase AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.5e-06     0.045      16      72 ..      27      81 ..      17      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-06
      AbiEii 16 vFkGGTaLslayglipRfSeDIDlsllrgdrkellealkealeeiaaalaeeglkvk 72
                ++ GG a    +  + R++eD+D+++ ++ ++++++ lk+a + ++++++++g   k
  CDO70287.1 27 ALVGGAA--CLILSSTRLTEDVDVVVPSTYTPASRDLLKAAGKYTISDRKDDGELAK 81
                5566666..2334479*********97799999999999999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 814.78
//
Query:       CDO70288.1  [L=281]
Description: hypothetical protein BN946_scf184942.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0081   15.6   0.3      0.021   14.2   0.3    1.8  1  UBM       Ubiquitin binding region


Domain annotation for each model (and alignments):
>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.2e-06     0.021      11      23 ..     161     173 ..     160     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-06
         UBM  11 psFLaaLPpdLRe 23 
                 p+FLa+LP d+R+
  CDO70288.1 161 PDFLASLPADIRQ 173
                 79**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2098.34
//
Query:       CDO70289.1  [L=95]
Description: hypothetical protein BN946_scf184942.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 622.21
//
Query:       CDO70290.1  [L=733]
Description: hypothetical protein BN946_scf184603.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-21   75.9   0.0    1.7e-18   66.9   0.0    2.2  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.7e-09   38.0   0.0    3.3e-09   37.0   0.0    1.5  1  RNase_H   RNase H
     0.0025   18.5   0.5     0.0067   17.1   0.5    1.7  1  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00037       2.2       3      36 ..      18      57 ..      16      59 .. 0.84
   2 !   66.9   0.0   2.9e-22   1.7e-18      82     221 ..      58     221 ..      55     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00037
                -TT.......S-EEE......-THHHHCTB--........ CS
       RVT_1  3 Kkg......pgsyRpisllsvdykalnkliakrLkdvlek 36
                K+g      p+ yRpi+l  +  k+l++++a rL  ++e+
  CDO70290.1 18 KPGkpsylvPKAYRPIALEDTSSKVLESVVARRLAGLAEQ 57
                5556668999***********************9877655 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 2.9e-22
                 CSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH. CS
       RVT_1  82 svpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee. 179
                 +v++++ll+ l +  vp+ l+ +i++fls+r + v+++  +s+++  + glpqGs+lSP+l+ ++  +ll+ ++ + ++     ++DD++++++s++  
  CDO70290.1  58 HVNHARLLHNLRKRHVPEDLVLWIRDFLSDRCTQVKFDDFTSEPLHASSGLPQGSPLSPILYLFYSADLLEVVDCKDPSQASGGFIDDTMLIVTSPSFe 156
                 79***********************************88889********************************988******************9999 PP

                 .....HHHHHHHHHHHHHHTT--BEGGG-EEE.......................ESSEEETTEE CS
       RVT_1 180 .....lqelleaveewlkesglkinpeKtklvlft.................v.kseevkyLGvt 221
                      l +l+  +  w +++ +++  +K +++++t                     e+ +yLG++
  CDO70290.1 157 qniarLTALVPQLLGWSNSHACRFDVAKFQMLHCTrnekrysplplvigdhrIlPCESARYLGII 221
                 9**********************************************9998648*********97 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   5.6e-13   3.3e-09       4     142 ..     431     564 ..     428     565 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 5.6e-13
                 EEEEEEEEEECTTTCEEEEEEECTT...EEEEEEEC..CCCHHHHHHHHHHHHHHHTT.SCSEEE...EEES-HHHHHHHHCCCHHHHHTTSSSETTSS CS
     RNase_H   4 vvvYtDGsclgnpgeggagavlykeg.arnisaple..eaqtnnraELsAvieaLkalksdekvn...iytDSkYvvkgitqwvhrwkknawkttseqk 96 
                   v+tDGs +   g  ga+a++++   ++ ++ +l   ++      EL  +i aL   +s+++v+   i  D k ++ ++ +      ++ ++ ++   
  CDO70290.1 431 FCVFTDGSGF--AGDIGAAAFAKGRAqEHVRRVNLGseDEHIVFEGELAGMILALDVIESEPRVTranILLDNKAAIRAVSK------RRPRPGQQLV- 520
                 679*****77..4555555555433234433333333245556689**********777885555555*****999997775......6677676666. PP

                 BHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  97 pvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 +++  +    lk+  +  ++++ wv+gH+Gv  gNe+aD+ Ak+a+
  CDO70290.1 521 ELFH-KRLRHLKAKRRSLAITVVWVPGHKGV-AGNERADMEAKDAS 564
                 6888.5556666888899*************.5**********985 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.5   1.1e-06    0.0067      36      80 ..     641     684 ..     623     687 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
      zf-RVT  36 lWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80 
                 +  l ++++  +  l++ ++ ss+ C+ C+   Et++H +l+C++
  CDO70290.1 641 ITQLRSGHVGLHAFLHRIKAVSSPMCPTCQC-PETVQHYLLTCRC 684
                 55566777888999*****************.6**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4639.41
//
Query:       CDO70291.1  [L=276]
Description: hypothetical protein BN946_scf184603.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-44  149.2  14.3    1.4e-23   83.0   3.1    2.2  2  UPF0016   Uncharacterized protein family UPF0016
    8.3e-06   25.6   2.0     0.0018   18.0   0.0    2.2  2  OFeT_1    Ferrous iron uptake permease, iron-lead transporter
     0.0015   18.2   4.7      0.028   14.1   0.0    2.2  2  TauE      Sulfite exporter TauE/SafE
     0.0033   17.2   0.6      0.049   13.4   0.0    2.2  2  Mntp      Putative manganese efflux pump
     0.0063   16.2   5.5      0.014   15.0   0.1    2.6  2  TerC      Integral membrane protein TerC family
  ------ inclusion threshold ------
        1.1    8.6  12.9        1.8    8.0   2.1    2.8  2  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> UPF0016  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   3.1   4.7e-27   1.4e-23       2      75 .]      23      96 ..      22      96 .. 0.96
   2 !   72.0   3.5   1.3e-23   3.8e-20       1      75 []     180     254 ..     180     254 .. 0.99

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 4.7e-27
     UPF0016  2 aaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75
                 +f++i+++E+GDkT+l+aa+La+r+  l Vf+Ga+  l++m++ls+ lG+ l +++p+++++l aavlFl+fG
  CDO70291.1 23 RSFAMIIVSEIGDKTFLIAAILAMRHPRLVVFAGAFSSLVVMSILSAELGHLLPTLIPRKYTQLCAAVLFLVFG 96
                69************************6666*******************************************9 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 1.3e-23
     UPF0016   1 laaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                 +++f+l+fl E+GD++q+ +++Laa  +++ V+lG+++++ ++t+l+vl G++++++++ + ++l+a  lFllfG
  CDO70291.1 180 VQSFILTFLGEWGDRSQISTIALAAADNVYVVVLGTIVGHSCCTALAVLGGRYVSTKISVKHVTLAASGLFLLFG 254
                 589***********************************************************************9 PP

>> OFeT_1  Ferrous iron uptake permease, iron-lead transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     6e-07    0.0018      13     101 ..      26     119 ..      17     126 .. 0.76
   2 !    7.2   0.4    0.0012       3.6     124     188 ..     203     267 ..     166     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6e-07
      OFeT_1  13 sllelseagavaaiyqgiyknlkpflyavaGv..livl..iptftlGkyi.vllpldyvllvaavilfyfGyrllrsarryfkgikkkkkeeee 101
                 +++ +se g  + + ++i+    p l   aG   ++v+  i    lG+++ +l+p +y  l aav+++ fG ++l+  r    g +k ++e +e
  CDO70291.1  26 AMIIVSEIGDKTFLIAAILAMRHPRLVVFAGAfsSLVVmsILSAELGHLLpTLIPRKYTQLCAAVLFLVFGVKMLQEGREMKPGNEKIQEEMKE 119
                 567789999999999999999999888888752234440144557999885799***********************99887777776644333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0012
      OFeT_1 124 alipqsyssallGtllasilvvaltavlkdqi.arirlphlkfvlsallfslgtlfilevlldite 188
                 a   + y   +lGt++      al+++    + ++i + h+    s l++ +g +++ e+ll i+ 
  CDO70291.1 203 AAADNVY-VVVLGTIVGHSCCTALAVLGGRYVsTKISVKHVTLAASGLFLLFGVVYLYEALLSIDP 267
                 3333334.5689****9999999998876666369**************************99975 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   9.4e-06     0.028      49     112 ..      42     104 ..      25     138 .. 0.71
   2 !    4.3   2.6    0.0091        27     182     234 ..     200     255 ..     166     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.4e-06
        TauE  49 lsgalahrrrgnvdw.rlllllllgsliGallGallllllpsellkllfgvlllllallmllrkk 112
                 ++ a++h r   v +  ++  l+++s++ a lG ll +l+p ++ +l+ +vl l++++ ml + +
  CDO70291.1  42 AILAMRHPR--LVVFaGAFSSLVVMSILSAELGHLLPTLIPRKYTQLCAAVLFLVFGVKMLQEGR 104
                 333444444..344425777788888888888888888888888888888888888888876443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0091
        TauE 182 lgyalagavdwpllll...llpgallGallGarlarrlsertlrrlfallllvlgv 234
                 +++a+a +v++ +l+       +++l +l G ++++++s +++ ++  +l l+ gv
  CDO70291.1 200 IALAAADNVYVVVLGTivgHSCCTALAVLGGRYVSTKISVKHVTLAASGLFLLFGV 255
                 333444555555444433233334444444666*********99999999999887 PP

>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.6e-05     0.049      19      71 ..      62     115 ..      45     127 .. 0.78
   2 ?    1.8   0.2      0.06   1.8e+02      18      58 ..     219     260 ..     199     273 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
        Mntp  19 almpliGwllGkllselie.avdhwiafllLlllGlkmivealkeeeeekkeke 71 
                 ++m ++   lG+ll +li  ++++  a++l+l+ G+km+ e+ + +  ++k +e
  CDO70291.1  62 VVMSILSAELGHLLPTLIPrKYTQLCAAVLFLVFGVKMLQEGREMKPGNEKIQE 115
                 6899999**********97699*******************9877766665544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.06
        Mntp  18 qalmpliGwllGkllselie.avdhwiafllLlllGlkmive 58 
                 + +++ + +l G+++s+ i+ +  +  a +l+ll G+  ++e
  CDO70291.1 219 HSCCTALAVLGGRYVSTKISvKHVTLAASGLFLLFGVVYLYE 260
                 333444445555555555553333444555555555555555 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   4.8e-06     0.014     121     179 ..      40     101 ..       7     121 .. 0.84
   2 ?    2.7   1.3      0.03        90     124     166 ..     201     243 ..     196     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.8e-06
        TerC 121 vlaavaitsdlfivitavilsilvlrflakllakllerf...ptlkylalalllligvklvl 179
                 + a++a+ +  ++v+++ + s++v+ +l+  l +ll ++   ++++++a++l l+ gvk++ 
  CDO70291.1  40 IAAILAMRHPRLVVFAGAFSSLVVMSILSAELGHLLPTLiprKYTQLCAAVLFLVFGVKMLQ 101
                 77888888888888888888999999999998888876533378889999999999****86 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.03
        TerC 124 avaitsdlfivitavilsilvlrflakllakllerfptlkyla 166
                 a+a+++++++v+++ i++     +la l  +++++   +k++ 
  CDO70291.1 201 ALAAADNVYVVVLGTIVGHSCCTALAVLGGRYVSTKISVKHVT 243
                 4678899999999999999888888877666666655555544 PP

>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.1   0.00059       1.8     132     192 ..      46     102 ..      25     103 .. 0.71
   2 ?    5.1   3.2    0.0045        13      24      72 ..     206     253 ..     178     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00059
        LysE 132 gdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavkllle 192
                  +  rl+ +ag+++ sl+ +s+l+     l + l  +k   + +  ++vl+++f+vk+l e
  CDO70291.1  46 MRHPRLVVFAGAFS-SLVVMSILSAELGHLLPTLIPRK---YTQLCAAVLFLVFGVKMLQE 102
                 45677888888875.55555555555555555555554...77999**********99865 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0045
        LysE  24 kggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlw 72 
                  ++++v+lg ++g      l++lG  ++++    v  +   ++g++Ll+
  CDO70291.1 206 DNVYVVVLGTIVGHSCCTALAVLGGRYVST-KISVKHVTLAASGLFLLF 253
                 578899999999999999999999999999.445555555555556553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1825.02
//
Query:       CDO70292.1  [L=308]
Description: hypothetical protein BN946_scf184603.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-24   86.7   0.0    2.4e-24   85.9   0.0    1.3  1  PNP_UDP_1        Phosphorylase superfamily
  ------ inclusion threshold ------
      0.017   15.1   0.1       0.35   10.8   0.0    2.4  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   2.6e-28   2.4e-24      29     185 ..       8     183 ..       3     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 2.6e-28
                 .TTEEEEEEEETTEEEEEEE--SSHHHHH.HHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEE......SSSCCGCCTHHCCTCCCCTTS CS
   PNP_UDP_1  29 grgfkfvtGtlkgkpvvivstGiGkpnaa.vvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddain......fdgrsplygpkeegqyfpdsy 120
                  rgf+++tG++kg+pv+i+s G+G+pna+ +v+e+r +  +   +++r G++Ggl  d++vG vv+p+++i       fd+ ++   + + +++++ s 
  CDO70292.1   8 ERGFTTITGRYKGVPVSIISIGMGYPNADfFVREVRECLNG-DMVVVRLGSCGGL-IDVPVGSVVVPKASIAvtrnydFDFVTG---KSD-EPPYRTSK 100
                 49***************************999999999987.9************.*************999776655666666...233.59999*** PP

                 SEE--HHHHHHHHHCHHTTT.....TTEEE.EEEEEESESS-CH...........HHHHHHHHHTC.....-CEEESSHHHHHHHHH CS
   PNP_UDP_1 121 dapadpelrallkeaaealg.....ikvhr.Gvvatadgfyaet...........eaelrllrrlg.....adaveMEtaavaqlAr 185
                 ++ ad+  +++l+++++ +       +++   ++a+ad+fy+++           +    l+ rl       +  eMEt ++++lA+
  CDO70292.1 101 PVLADSIVHDALVKSLKHTRpptitTPIVDhTLNASADSFYSSQgrqtsfpdhnaD----LIDRLMskhkdLATFEMETFHILHLAS 183
                 **************777777777774444469************888888654320....222222344445588**********97 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.9e-05      0.35      98     139 ..      24      69 ..      13      80 .. 0.81
   2 ?    1.5   0.0     0.028   2.5e+02     127     165 ..     249     288 ..     238     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.9e-05
  Glyco_tran_WecB  98 dlllvglGapkqEkwiarlkeelkak.v...iigvGaafdflagkv 139
                      +++ +g+G p  + ++++ +e l+   v   +  +G+ +d+  g v
       CDO70292.1  24 SIISIGMGYPNADFFVREVRECLNGDmVvvrLGSCGGLIDVPVGSV 69 
                      7999*****************8854434124567999999988876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.028
  Glyco_tran_WecB 127 gvGaafdflag.kvkraPkwmqklgleWlyRllkePkRlw 165
                      +   + df++  +v  + +w  ++ le l+ l+ eP Rl 
       CDO70292.1 249 ASRTSQDFISPqEVATIEAWTGRAVLEALVGLAIEPDRLH 288
                      5555667887657899999******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2155.49
//
Query:       CDO70293.1  [L=253]
Description: hypothetical protein BN946_scf184603.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-13   50.8   4.2    3.4e-13   49.8   4.2    1.5  1  HMG_box    HMG (high mobility group) box
    9.1e-12   45.4   2.1    1.9e-11   44.4   2.1    1.5  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   4.2   3.7e-17   3.4e-13       1      68 [.      95     168 ..      95     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.7e-17
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHS......HHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkal......seeeKkkYeekaekekaryekekpey 68 
                 pkRp++af++f+++ r+++ a n  ++  ++sk+l+++W+++      s++eKk Y ++a+k+k  +++++p+y
  CDO70293.1  95 PKRPMNAFMIFARKRRPQISAANQMMRTGDVSKILSKEWNSMdmrnwsSQSEKKFYLDQAKKLKDNFNSKYPDY 168
                 8****************************************966666679***********************9 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   2.1   2.1e-15   1.9e-11       4      69 ..      95     165 ..      92     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.1e-15
                 .-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS......-HHHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2   4 pkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkal......seeeKekYeekAkedkkrydrea 69 
                 pk+++nA+++f+++++p++ +  n++++ ++vsk +s++W ++      s++eK+ Y ++Ak++k ++++  
  CDO70293.1  95 PKRPMNAFMIFARKRRPQISAA-NQMMRTGDVSKILSKEWNSMdmrnwsSQSEKKFYLDQAKKLKDNFNSKY 165
                 9*********************.*******************9777777789**************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1628.42
//
Query:       CDO70294.1  [L=295]
Description: hypothetical protein BN946_scf184603.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-51  174.4   1.1    3.3e-51  174.1   1.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.2e-35  121.9   0.9    2.8e-35  121.6   0.9    1.1  1  adh_short     short chain dehydrogenase
    8.5e-10   38.8   0.3    1.2e-09   38.3   0.3    1.1  1  KR            KR domain
  ------ inclusion threshold ------
      0.014   14.9   0.1      0.022   14.2   0.1    1.3  1  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   1.1   7.5e-55   3.3e-51       4     233 ..      35     267 ..      32     268 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.1 bits;  conditional E-value: 7.5e-55
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   sgI +a+ +a+ ++Ga+ +++ ++ ++ ++++++la+++g++  ++++DV++++q++++v+++ ekfg++D+++  a+      +p+ ++s+++f++
    CDO70294.1  35 SGICKAMTEAVMRHGAHAAIVGRKLDRlQASANDLASATGNQclAVQADVRNPKQLQEAVAKTIEKFGRIDFVICGAAGNFL--APISKLSENGFRT 129
                   8***********************9999************99644******************************9999999..************* PP

                   HHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BH.CTGGGGSTTHHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpik.Tlaasgikgfdelleel 192
                   ++++++ ++++++ka lp+++++ gs +++s +   +++p + + +aaKaa+ a++  lAve gp+g+R N+++pgpi+ T+ +++++ +    +++
    CDO70294.1 130 VIEIDTIGTYNTIKATLPHLRASkGSYIHVSATLHYKGTPYQVHVSAAKAAVDATSAVLAVEEGPHGVRSNVIAPGPIAgTEGMDRLSAKGPDAKNF 226
                   ******************665555******************************************************8455599999999999999 PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +  +plgr g++++va+a++fL+sd+a+yitGq++ vDgG 
    CDO70294.1 227 AWATPLGRYGDVKDVANATVFLFSDAARYITGQVIPVDGGC 267
                   9***************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.9   6.2e-39   2.8e-35       1     189 [.      26     215 ..      26     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 6.2e-39
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 kv + tG++sGI +a+ +++++ Ga+ ++v+r+ ++l++ a+ l ++ g++ la+q+Dv++ ++++++v+k ++k+g++d ++ +A+ +  +p+s+lse
  CDO70294.1  26 KVLFCTGGGSGICKAMTEAVMRHGAHAAIVGRKLDRLQASANDLASAtGNQCLAVQADVRNPKQLQEAVAKTIEKFGRIDFVICGAAGNFLAPISKLSE 124
                 67889*****************************************99*************************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdmake 189
                 + ++ vie+   g++++++a lp+ l++s+G+ + vs +   ++ + ++  sA+Kaav++ +  la e  p+g+r n++aPG+++ T+ + +
  CDO70294.1 125 NGFRTVIEIDTIGTYNTIKATLPH-LRASKGSYIHVSATLHYKGTPYQVHVSAAKAAVDATSAVLAVEEGPHGVRSNVIAPGPIAgTEGMDR 215
                 ************************.67*********************************************************98887655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.3   2.7e-13   1.2e-09       5     161 ..      30     186 ..      27     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2.7e-13
                 EETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HH CS
          KR   5 itGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtae 103
                  tGG  g+++++++  +++ga+  ++++R+   d+ +++  +  +a+g ++ +v+aDv +++++++++++  +++++i  vi  A     +++++++++
  CDO70294.1  30 CTGGGSGICKAMTEAVMRHGAH-AAIVGRK--LDRLQASANDLASATGNQCLAVQADVRNPKQLQEAVAKTIEKFGRIDFVICGAAGNFLAPISKLSEN 125
                 69******************85.5889***..555555455555677**************************************************** PP

                 HHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR 104 dleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalae 161
                  +++v++    G+ n  +++ +    s    + +S      g++ q++ +aa a +Da  +
  CDO70294.1 126 GFRTVIEIDTIGTYNTIKATLPhlrASKGSYIHVSATLHYKGTPYQVHVSAAKAAVDATSA 186
                 *************99888887768778889999************************9765 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   4.9e-06     0.022      76     133 ..      29      91 ..      19     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.9e-06
                   EEEESS..SSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE....C CS
  His_biosynth  76 vqvGGG..IrsledveelleagadkviigtaavknpelikelaekfgsqkivvaiDarr....g 133
                   ++ GGG  I++    e++++ ga+  i+g +  +     ++la++ g+q+++v  D+r+    +
    CDO70294.1  29 FCTGGGsgICKAM-TEAVMRHGAHAAIVGRKLDRLQASANDLASATGNQCLAVQADVRNpkqlQ 91 
                   5566655588887.899*****************************************954321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1955.30
//
Query:       CDO70295.1  [L=680]
Description: Glycoside Hydrolase Family 31 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-146  488.3   1.0     3e-146  488.1   1.0    1.0  1  Glyco_hydro_31  Glycosyl hydrolases family 31


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.1   1.0  1.7e-150    3e-146       1     439 [.       9     550 ..       9     551 .. 0.95

  Alignments for each domain:
  == domain 1  score: 488.1 bits;  conditional E-value: 1.7e-150
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTTSS.-H.HHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdkerFp.dp.kemvdelh 93 
                     y+f+Gp+p++v++qy el+G p+ +P w++Gfh++r+gy+d ++++e v k+rea+iPl+v+++Did +++ +dft+d+ +Fp d+ ++++ el 
      CDO70295.1   9 YFFSGPSPQKVIEQYGELVGFPTWQPAWGFGFHLCRWGYRDVNDTREQVTKMREANIPLEVMWNDIDLYHALRDFTTDPFSFPaDQmAAFIGELT 103
                     9*******************************************************************9999***********96679******9 PP

                     HTT-EEEEEE-SEE.E.-T...TSHHHHHHHHTTSBECCCCCS.TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCT.CT--EEEE-STTTB.S CS
                     xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  94 ekgvklvvivdpaiskqee...eyeafdegkekgvflknkdgs.ykgk.wpgstafpDftnpearewwkkelkkflld.lgvdglwiDmnepsnf 182
                     ++++++++ivd+ai+k  +   +y+++ +g+e +v++kn+dgs y g+ wpg+t+fpD++ ++++++w++ l+++ ++ ++++g+w D neps+f
      CDO70295.1 104 ANQQHYIPIVDAAIAKLVNasdTYDPYSRGSELDVWMKNPDGSeYLGQmWPGYTVFPDWFANNTESFWTDALRNWSISgVNFSGIWLDVNEPSSF 198
                     9**********9997665577899*******************999999*************************99967**************** PP

                     CCCCHH.HHCCCTS................................................................................. CS
                     xxxxxx.xxxxxxx................................................................................. RF
  Glyco_hydro_31 183 eegsds.eekeake................................................................................. 195
                     + gs+  + + +                                                                                   
      CDO70295.1 199 CIGSCGtGANLTAAtiptmffpgtpgnlvteypegyndtiwgpsgnitingtltfgnhslarvlpkrglgaavepnvnlnnppyalhnadgflst 293
                     *****9765555559******************************************************************************** PP

                     .......CETTCC....HHHHCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHHTTT--SEEE CS
                     .......xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 196 .......tkaags....hydvhnlygllmakatyeglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfslsGvpfwga 279
                            t+   +    + d+hnl+gl+++kat+ gl e +p krpf+++Rstf++s+++ +hW+Gdn+s+W  +  si+++l+f+l+++pf+ga
      CDO70295.1 294 htvstnaTH---AngavELDTHNLWGLMEEKATHLGLLELRPGKRPFLISRSTFPSSGKWTGHWLGDNMSKWRYMYLSIQGVLQFQLFQIPFVGA 385
                     *99865333...245699***************************************************************************** PP

                     ECT-SG.HCHHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH-TT-CCCCC CS
                     xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 280 DigGFe.ntteelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplflefpedektfd 373
                     D++GF+ nt+eel+ RW+ql+af+Pf+rnH+ ++a +qep+++++ v+ea+r+ai++Ry+LlPy+Ytlf +a+ +g+p +r+lf+efp+++++f+
      CDO70295.1 386 DTCGFQgNTDEELCNRWMQLSAFMPFYRNHNVRSALSQEPYRWDS-VAEASRTAINIRYSLLPYWYTLFANASLRGTPPIRALFFEFPDEPELFA 479
                     ******9*************************************9.************************************************* PP

                     --S-EEETTTEEE----STT-SEEEEEE-SS...EEEETTT--EEES..SEEEEEE--TTSS-EEEETTEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 374 iddqfmfGdsLLvaPvleeeatsvevyLPgg...kWydfwtgekyeg..gqtveltapldeiplfvraGaI 439
                     +d+q+++G++LLv+Pvl+++ ++v+  +Pg+   +W d++t+e ++   +++ +l+apl +i++++r+G+ 
      CDO70295.1 480 VDRQYLIGRDLLVTPVLTPNVSTVDGIFPGQgrvQWRDWYTHEIVDAavSKNTTLDAPLGHINVHIREGSA 550
                     ********************99*******5559************9975445589999977********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4337.48
//
Query:       CDO70296.1  [L=471]
Description: hypothetical protein BN946_scf184603.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-30  106.0   0.3    2.9e-30  105.5   0.3    1.3  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    3.9e-22   78.2   0.1    1.1e-21   76.7   0.0    1.8  2  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    3.6e-16   59.4   0.0    8.6e-16   58.1   0.0    1.6  1  RT_RNaseH    RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.3   4.8e-34   2.9e-30       1     222 []     160     320 ..     160     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 4.8e-34
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ++Kk+ gs  +     vdy+ lnk+++k         + +++p   +              l+  +ka++++k+Dl+ a++ v  +  ++ +taf+++ 
  CDO70296.1 160 VKKKD-GSLHLC----VDYRGLNKITQK---------DRYSLPLVSDL-------------LDTLRKARIYTKIDLRHAYNLVCIAPGDEWKTAFRTR- 230
                 68999.999994....5***********.........***********.............8889*********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                                         + ++ + ++p+G+ + P+ f++f+n+++ +l      v +++Y DDili+s+s ee+q+++++v ++l++ +l  
  CDO70296.1 231 ------------------------YSSFKWLVMPFGLSNTPAAFQRFVNKVFADLLD----VCVIVYLDDILIYSNSLEEHQQHVKEVLRRLQKFKLYA 301
                 ........................99******************************8....9************************************* PP

                 EGGG-EEE.....ESSEEETTEEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvtl 222
                  ++K+++      +++vkyLG++l
  CDO70296.1 302 RADKCEFH-----ATSVKYLGYIL 320
                 ********.....9*******975 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   8.1e+03      61      75 ..     276     290 ..     273     302 .. 0.60
   2 !   76.7   0.0   1.9e-25   1.1e-21       3      83 ..     385     465 ..     383     468 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
  RT_RNaseH_2  61 aSrklskaernystt 75 
                  +S +l +++++ + +
   CDO70296.1 276 YSNSLEEHQQHVKEV 290
                  666666666655443 PP

  == domain 2  score: 76.7 bits;  conditional E-value: 1.9e-25
  RT_RNaseH_2   3 eeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAiv 83 
                  + + + f+ lk+a+tsa +L+h +pd+++++etDaSd++i+++L+ + + g+++pi f Sr+ls ae ny+t++kell+i+
   CDO70296.1 385 QRCWDFFNVLKKAFTSALILHHWEPDRQITVETDASDYAIAGILLITMESGELHPIVFHSRTLSGAELNYDTHDKELLTIL 465
                  677888************************************************************************997 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.4e-19   8.6e-16       2      58 ..     409     465 ..     408     468 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.4e-19
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHH CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAiv 58 
                 p++++++etDAsd++i+++L  + e+ge +pi f Sr+lsgae ny+t++kell i+
  CDO70296.1 409 PDRQITVETDASDYAIAGILLITMESGELHPIVFHSRTLSGAELNYDTHDKELLTIL 465
                 8999**************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3065.00
//
Query:       CDO70297.1  [L=478]
Description: hypothetical protein BN946_scf184603.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-12   45.0   0.0    2.4e-11   43.7   0.0    1.7  1  Retrotrans_gag  Retrotransposon gag protein
    1.1e-07   31.7   0.0    1.9e-07   30.9   0.0    1.3  1  DUF4939         Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
        8.1    5.2   8.3         11    4.7   8.3    1.2  1  Apt1            Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   4.1e-15   2.4e-11       3      94 ..     207     302 ..     205     304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-15
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqldevlteeakiekfl 91 
                     a + l+g A++w+k++  +++         s++ ++++++ +f p +++ q+e++l +lr  +++ +++Y+t+f++la+q+   + ++a   +f+
      CDO70297.1 207 AISYLKGMALAWFKPYLLERQSGnppefLYSYAVFQEELQVNFGPYDVTGQAEHDLENLRMaDNQRIAKYITQFNRLATQVC--WGHAAFRYQFY 299
                     6789***********9888887779**99*****************************************************..*********** PP

  Retrotrans_gag  92 aGL 94 
                     +GL
      CDO70297.1 300 KGL 302
                     **9 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.3e-11   1.9e-07      26     106 ..     165     251 ..     143     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.3e-11
     DUF4939  26 ipfpetfdG.dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi.kkds....pllndyraflaemkrvfGw 106
                 +  p++fdG d  +l  f  q         +tf++d  kvt+ i+ l+G al w  py+ +++s     +l  y  f +e++  fG 
  CDO70297.1 165 VREPDQFDGsDPLKLRSFFTQLELVFKARPRTFNTDEKKVTYAISYLKGMALAWFKPYLlERQSgnppEFLYSYAVFQEELQVNFGP 251
                 55699***945679********9999999*****************************74555544435999**********99995 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.3    0.0018        11     325     386 ..     347     397 ..     305     465 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0018
        Apt1 325 essssss....ssssssassssssssrssslelrlkptsstssssssessssssskkrsseessle 386
                  s    +    +s +s+++s+sssssr+s+++    +t stsss ++++ss +++         l+
  CDO70297.1 347 GS----KlssgTSGKSTSESKSSSSSRPSQSSG---STPSTSSSATPRTSSGTLKT--------LS 397
                 11....111111111111111111111111111...11222222222222111111........11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3447.62
//
Query:       CDO70298.1  [L=188]
Description: hypothetical protein BN946_scf184603.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00025   21.3   0.1    0.00038   20.7   0.1    1.3  1  Retrotrans_gag  Retrotransposon gag protein
     0.0011   18.9   0.1     0.0025   17.7   0.1    1.6  2  DUF4939         Domain of unknown function (DUF4939)


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   4.2e-08   0.00038       3      78 ..     104     185 ..     102     188 .] 0.91

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.2e-08
  Retrotrans_gag   3 astslegaAkswlkslvarsida.....sesWkdlkkaflktflpserkdqleeelsslrQ.gtesvreYvtrfktladqld 78 
                     a + l+g A++w++ +  +++          ++ ++++++ +f p + + q++++l +l   +++ +++Y+t+f+ l +q++
      CDO70298.1 104 AISYLKGMALTWFELYLLEHELGnplefLYLYEVFQQELQVKFGPYNITGQAKHNLENLWMaDNQRITKYITQFNCLTTQVR 185
                     67899********987777666669999999*************************************************98 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.8e-07    0.0025      55     105 ..      92     147 ..      86     152 .. 0.80
   2 ?   -3.5   0.0         1   9.3e+03      58      71 ..     164     177 ..     160     183 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-07
     DUF4939  55 ktfssdalkvtflitrltGealewvlpyikkds.....pllndyraflaemkrvfG 105
                 +tf+++  kvt+ i+ l+G al w   y+ ++       +l  y  f +e++ +fG
  CDO70298.1  92 RTFDTNEKKVTYAISYLKGMALTWFELYLLEHElgnplEFLYLYEVFQQELQVKFG 147
                 69***********************9998654312212457788888888888887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1
     DUF4939  58 ssdalkvtflitrl 71 
                  +d+ ++t  it++
  CDO70298.1 164 MADNQRITKYITQF 177
                 45555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1338.08
//
Query:       CDO70299.1  [L=198]
Description: hypothetical protein BN946_scf184603.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1416.85
//
Query:       CDO70300.1  [L=74]
Description: hypothetical protein BN946_scf184603.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 501.21
//
Query:       CDO70301.1  [L=582]
Description: hypothetical protein BN946_scf184370.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-94  316.8   0.0    1.2e-77  262.0   0.0    2.0  2  Ric8      Guanine nucleotide exchange factor synembryn


Domain annotation for each model (and alignments):
>> Ric8  Guanine nucleotide exchange factor synembryn
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.0   0.0   6.5e-82   1.2e-77       5     358 ..      79     517 ..      77     519 .. 0.93
   2 !   52.2   0.7   2.9e-18   5.2e-14     412     459 .]     533     580 ..     529     580 .. 0.90

  Alignments for each domain:
  == domain 1  score: 262.0 bits;  conditional E-value: 6.5e-82
        Ric8   5 LkilgRdpkgldplftkeaistLlklafdssstsaslekeseeevareAlrcLaNalllsekarqrlverlkggeekavellkkdksspadiefldsRl 103
                 +k lg++p g++ +++  ++stLl+l+++ +++++         +  eAlr +aNa+ll ++ar +++++ +gg+e a+ell+  ks  +d  fl+sRl
  CDO70301.1  79 VKSLGKNPAGSAAIASAANLSTLLSLSRAYKDDAE---------ASSEALRSVANAMLLVDQARTTFIDKQVGGGEFALELLE--KSGVPDRIFLASRL 166
                 89***********************9544444443.........359************************************..7799********** PP

        Ric8 104 lFLlTaleseirkelkelveeesl.laealeqilkrkakevsssdeaasslskeesealselLKllFnltlhypksvlde.eea......eelseklar 194
                 lFL+T++  ++ +++k+ ve +   +  ++ + ++ k++     ++      k ++ea+++lLK++Fnl+lhypk v+d+ +++      + +s++l++
  CDO70301.1 167 LFLSTVSMLTAGDFIKSIVEAKPPgHPGNITEVIGGKLD---VLTKGILTGAKLAREAMTDLLKFTFNLLLHYPKLVDDSsNKNepkimgDCWSDRLDG 262
                 *******999999**********99**************...678999*****************************99954448*****99******* PP

        Ric8 195 llppllrlllllpipspdpLkpplthlinaLlnlpleeskkeaa....................................................... 238
                  lp llr++++lp++ p pL++p+th+i+ L+++p+++s + ++                                                       
  CDO70301.1 263 ILPYLLRTFNTLPPSFPAPLTAPMTHVIHSLITIPVSPSLRAVWfppnstsrgspvpskasssneasshpptskssrpssstnssnagsptssgpakdp 361
                 ************************************9999999999999999999999999************************************** PP

        Ric8 239 ........................lfpssaegnnmdvvsrllelldkrlaaad.ekkdkd...ae..........leekltpllllLtklaeaaeevRk 299
                                         + p    +++ dv+ r+++lld +la++   + d+d   ++          l++ +tpl +lLtkl++a+e +R+
  CDO70301.1 362 kpgafdrawsalsagrrslsrsssPSP--PASQHLDVLLRAYDLLDVSLAHYMpGTLDPDdgtVRekiraetdqtLDDVMTPLAVLLTKLCQADEGSRA 458
                 *****************9998644323..5569*****************9665666666444115788889999************************ PP

        Ric8 300 ylrerlLPplrDrskrlekgdtlrgrllRlmtsvstprlkdavaelLFvLckedasrlv 358
                 ++r ++LP+++Dr+++le +++l+grllRl+++v++ +lk+av+e+L+++c++da +l+
  CDO70301.1 459 RMRGWILPDDLDRTSPLEGRQDLLGRLLRLLSCVHHAKLKNAVGEMLYAVCDSDAGTLS 517
                 *******************************************************9997 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 2.9e-18
        Ric8 412 eeenpleeMTeeEKErEAerLfvlfdrlektgviqv.enPvekagedGr 459
                 ++ +p  eM++eEKErEAe+Lfvlfdrlek+g +   +nP++ka+++G+
  CDO70301.1 533 KP-GPPIEMSDEEKEREAEKLFVLFDRLEKSGALPKeSNPIRKAIQEGK 580
                 44.45579**************************9989**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3586.12
//
Query:       CDO70302.1  [L=137]
Description: hypothetical protein BN946_scf184370.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-12   45.7   0.2    7.4e-12   45.4   0.2    1.1  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.2   4.1e-16   7.4e-12       1      81 [.       9      98 ..       9     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 4.1e-16
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT.S---EE..EE-SSHHHHHHHHHHHHCTT.......--EEE-GGGS--- CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag.epidai..ysSplkRarqTaeliaealg.......lpveldegLrEid 81
                +yL+RH+e e+n+++     +d+ Lt++Gr+qA++l e+ ++ ++ +a   +sS l+R+  T  l+  al         pv + ++L+E++
  CDO70302.1  9 IYLLRHAEAEHNVSE-NYSIKDARLTPRGRQQAAKLNEHTKHtVQQSAHllVSSGLRRTLSTTVLAFPALRkrleaagKPVVVLPQLQEVN 98
                8************96.66789********************9733333368***********99887777767677779999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 967.61
//
Query:       CDO70303.1  [L=84]
Description: hypothetical protein BN946_scf184370.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 610.10
//
Query:       CDO70304.1  [L=667]
Description: hypothetical protein BN946_scf184370.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 4488.54
//
Query:       CDO70305.1  [L=175]
Description: hypothetical protein BN946_scf184370.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   10.4   6.8       0.14   10.3   6.8    1.1  1  Nop14           Nop14-like family
       0.29   10.5   8.7       0.32   10.4   8.7    1.1  1  SDA1            SDA1
       0.34    9.1   8.6       0.38    9.0   8.6    1.1  1  CDC45           CDC45-like protein
        2.9    7.6   6.5        4.6    6.9   6.5    1.3  1  FAM176          FAM176 family
          3    6.5   7.4        3.2    6.4   7.4    1.1  1  SAPS            SIT4 phosphatase-associated protein
          3    6.3  17.6        3.3    6.1  17.6    1.0  1  Macoilin        Macoilin family
          5    6.7   9.0        6.7    6.3   9.0    1.2  1  SURF2           Surfeit locus protein 2 (SURF2)
          7    6.9   9.3        8.6    6.6   9.3    1.2  1  PNISR           Arginine/serine-rich protein PNISR
        8.8    4.5  10.8         11    4.3  10.8    1.2  1  Menin           Menin
        9.4    5.5  11.7         12    5.2  11.7    1.2  1  CobT            Cobalamin biosynthesis protein CobT


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.8   7.9e-05      0.14     364     426 ..      86     140 ..      41     170 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.9e-05
       Nop14 364 seseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeel.leeekkaaeekk 426
                 s+s++++          +d+e+++ +++d+d++sd +++e+++++  + +  + +++ ++++++
  CDO70305.1  86 SSSSSDS---------TSDSEDDSPSDTDSDSDSDSSDSESSSSSTSSTSGsTSSTSTSSTSSS 140
                 1111111.........111111111111111111111111111111111110111111111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   8.7   0.00018      0.32     120     177 ..      81     135 ..      48     172 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
        SDA1 120 widvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekek 177
                  + ves++ + + sd sed++ ++++++++ + +++e + ++ +++++ + ++  +++
  CDO70305.1  81 HVAVESSSSSDSTSD-SEDDSPSDTDSDSDSDSSDSESSSSS-TSSTSGSTSS-TSTS 135
                 344555544334444.22222222222222211111111111.1111111111.1111 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.6   0.00021      0.38     127     192 ..      85     148 ..      56     172 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00021
       CDC45 127 eeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrr 192
                 e+ + sd   + +++edd+ +++++++++d++d+e++++++++ + s+s+++ + ++++d+ s  r+
  CDO70305.1  85 ESSSSSD---STSDSEDDSPSDTDSDSDSDSSDSESSSSSTSSTSGSTSSTSTSsTSSSDSASIPRT 148
                 3333332...223333333333333332222222222222222222222222222222333333333 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.5    0.0025       4.6      64     105 ..      88     129 ..      68     147 .. 0.37

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0025
      FAM176  64 esekasededeeeeeeeedsseseaeeelsefertlsvnvft 105
                 +s+++++d+++++ ++++++s+s+++++ s++++t s++  t
  CDO70305.1  88 SSSDSTSDSEDDSPSDTDSDSDSDSSDSESSSSSTSSTSGST 129
                 111223333333333333333333333222222222222222 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0018       3.2     273     337 ..      62     126 ..      25     162 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0018
        SAPS 273 deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaee 337
                 +++s + +a++  +++  ++v++e+s+s++ +++++d+s+sdt+++s+++++d++ss++s+ +++
  CDO70305.1  62 SRKSRPPAASARATAKPHAHVAVESSSSSDSTSDSEDDSPSDTDSDSDSDSSDSESSSSSTSSTS 126
                 34444555555555555666666666666666666666666666665555555555554443222 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  17.6    0.0019       3.3     284     370 ..      56     143 ..      25     171 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0019
    Macoilin 284 qekeymenkskskrlsksessgsesellveesvkskssssssssn.knskkasagsagssnssskkhsessksvtsssssknskkqkl 370
                 ++ + ++ ks++   s + + + + ++ ve+s++s s+s+s++++ +++++ s + ++ s+sss + s++s+s++s+s+s+ s  +++
  CDO70305.1  56 NDGRSLSRKSRPPAASARATAKPHAHVAVESSSSSDSTSDSEDDSpSDTDSDSDSDSSDSESSSSSTSSTSGSTSSTSTSSTSSSDSA 143
                 2222223333333333333333333333333333333333333222111111222222222222222222222222222222222211 PP

>> SURF2  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.0    0.0038       6.7     123     205 ..      49     134 ..      38     162 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0038
       SURF2 123 lekskkkedqkkgrkks...kkkkesfwepss.sdeeasdsddsmsdlypdelFtekpvgkrededdkedfetdeeeeeakvsdeek 205
                  +k+ k++d+   ++ks   +    ++ +p   +  e s s+ds sd+++d+ + + ++ ++  +d+++++ + + +  +++s  + 
  CDO70305.1  49 AHKRTKTNDGRSLSRKSrppAASARATAKPHAhVAVESSSSSDSTSDSEDDSPSDTDSDSDSDSSDSESSSSSTSSTS-GSTSSTST 134
                 566666666555333333445666666666663477777799999999999654444444444433333222222222.22222222 PP

>> PNISR  Arginine/serine-rich protein PNISR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.3    0.0048       8.6      42     112 ..      81     141 ..      49     171 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0048
       PNISR  42 rkeekkesskeeeeaknprnlakskfdsedeksdeeeeegaegedsesqekasskksevdeqespeeeeaa 112
                 + +++++ss+++++  +  +++   +ds++++sd+e  +        s++++s  +s  ++++++   ++ 
  CDO70305.1  81 HVAVESSSSSDSTSDSEDDSPSDTDSDSDSDSSDSESSSS-------STSSTSGSTSSTSTSSTS---SSD 141
                 2233333333444444444444444444444444444211.......111111111111111111...111 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  10.8     0.006        11     518     604 ..      74     160 ..      38     170 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.006
       Menin 518 ggdqplaeqkqkkageeserreannnnnsksnsekeadkkasttsnggeasstpsseseaavespsehkeakleeks.qelasappaa 604
                 +  +p a+   ++++++ ++++++++  s+++s+ ++d + s++s ++++s+ + s+s+++ +s s+   a +  +s q    app++
  CDO70305.1  74 ATAKPHAHVAVESSSSSDSTSDSEDDSPSDTDSDSDSDSSDSESSSSSTSST-SGSTSSTSTSSTSSSDSASIPRTSkQAPNGAPPKP 160
                 4555666555554444444444455555555555555555444444333333.22222233333334445555555523334455554 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  11.7    0.0067        12     215     268 ..      88     141 ..      61     153 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0067
        CobT 215 deeeeedeeeeeeeseee.eeegedddkeeqeeaaseeeeeededeesketeaae 268
                 +++++ +++e++++s+++ +++++++d+e++++++s+++ ++++++++++t++++
  CDO70305.1  88 SSSDSTSDSEDDSPSDTDsDSDSDSSDSESSSSSTSSTS-GSTSSTSTSSTSSSD 141
                 222222222222222222122222222222222222222.222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1377  (0.0768029); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        59  (0.00329076); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 1084.05
//
Query:       CDO70306.1  [L=669]
Description: hypothetical protein BN946_scf184370.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-16   58.8   0.2    8.8e-16   57.8   0.2    1.6  1  DnaJ      DnaJ domain
    2.2e-14   53.3   0.0    6.4e-14   51.7   0.0    1.8  1  Sec63     Sec63 Brl domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.2   9.8e-20   8.8e-16       1      62 [.     102     168 ..     102     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 9.8e-20
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS.....CCHHHHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn.....pkdpeaeekFkeineAyevLsdpekRkqY 62 
                 d++eiLg+s++a+ +eIk+ Y+kl++k+HPDk      +  +  e kF ei++Ay+ L+d++ Rk++
  CDO70306.1 102 DPFEILGISTSATVKEIKSHYKKLSRKFHPDKVklavnETMEAVEAKFVEITKAYKALTDETIRKNW 168
                 689****************************765554244447788******************986 PP

>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   7.2e-18   6.4e-14      53     251 ..     279     583 ..     271     589 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 7.2e-18
                 HHHHHHHHHHT....SSS--...SSSTTSHHHHHHHHHHHHHTT---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-T CS
                 xxxxxxxxxxx....xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  53 EkkelkkLlek....vpikv...kediespeaKvniLlqayisrlklegsdlvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwd 144
                 Ekk+ ++L+ k    ++  +   +++   +  +++iLl a++ rl++++  l+++++ +l + + +l+a++ i+++++wl +++ +++L   + q++ +
  CDO70306.1 279 EKKIKERLHGKwdelLK--LadaDSKQYAKRKRAFILLYAHLLRLPVQNPTLQKEQTQVLLQTPPLLNAMLNISMARNWLLPTIAAMRLHAYLAQAIAP 375
                 44444444444444322..13333455566679****************************************************************** PP

                 T................................................................................................S- CS
                 x................................................................................................xx RF
       Sec63 145 s................................................................................................lP 147
                 s                                                                                                lP
  CDO70306.1 376 SpvdlkvaqlpgidpadasnlpksessdyaaaisslsksdspalpeaqkalerlgkteivdasfkvigerfvtpssfvhllvklrlaplakdgsvvpLP 474
                 ************************************************************************999988888888888888888887777 PP

                 -EEEEEEECEBTTSEEEEEEEEEESSSS-S..........CTSSS-CHTSBEEEEEEEEETTTTEE....EEEEEEEESSTTTTT...EEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx...xxxxxxxxxxx RF
       Sec63 148 kleieaevqpitrsklrvevtiereeeesk..........pdfpwdkkgksekfwlvvedsendel....laikrvtlekkklas...tqevkleftvp 229
                 k e++ + +    ++ + + ++       +          p +p ++   + ++w+v+ d +++++    l+i  v + +    +     ++k++f++ 
  CDO70306.1 475 KPEVNEKRDNEFLNSKKDTEDLP------SgeyvsgyahaPYWPANR---KPSWWIVLADVKSNKVvvppLKITDVPVADPA--RgidYRTYKIQFQA- 561
                 77776666333333333222333......02223334456*******...**************994444456666665543..235688999*****. PP

                 -.SSCCEEEEEEEEESSSSS-E CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 230 lsepgpkqltvrlisdswlgld 251
                 +++ g  + +v ++sd+++g +
  CDO70306.1 562 PQTVGLFTWKVFVVSDTFVGDE 583
                 78999*************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1343  (0.0749066); expected 358.6 (0.02)
Passed bias filter:                      900  (0.050198); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 4647.49
//
Query:       CDO70307.1  [L=377]
Description: hypothetical protein BN946_scf184370.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   29.9   0.0    7.2e-07   28.3   0.0    1.8  1  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.11   12.7   0.5       0.18   12.0   0.5    1.3  1  YbjM      Putative inner membrane protein of Enterobacteriace


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0     8e-11   7.2e-07      12     293 ..     108     373 ..      97     375 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 8e-11
                 CHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHS CS
        p450  12 nllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfg 110
                  l +++++++ h+++++l+++yg+i+r  +++   v + +p+a+ +v       +  r+ +a +a     +++  ++ a+++++ + R+          
  CDO70307.1 108 TLTWIASTGKQHKFIKRLHETYGDIVRTGPNE---VSIRNPDAIPSVSTLP---KGPRWINAKMAF---SNQNSLIAEADPHEHARRRKXXXXXXXXX- 196
                 67899999******************987765...78999*******9888...477778777774...34555555555555555555555555555. PP

                 TTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH..HHTCCSCHHHH CS
        p450 111 klsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp..llkylptkllr 207
                                  +l  ++ge    d+ +++ ++ +d++++ +Fg   +++++ ++      ++++++  ++s++ + ++++  l+   + ++ r
  CDO70307.1 197 XXXXXXXXXXXXXXXXXALAARKGEV---DLGKWIGYFSYDFMSDMAFGGGSEMIKNGDS----GSNWHILNDGMASFHVIGQIPWavLYARRIPRFAR 288
                 44677777777777777777777777...************************9999988....44555555445677778888884333344556777 PP

                 HHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.....TTCTCT..SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH CS
        p450 208 klkeavkklkdlldklieerretldsakksrrdfldalllak.....kekkge..sklsdeelaatvlellfaGvdTtsstlswaLyeLaknP 293
                  ++++v +  +l+ + ++    + d           +l+        ++++g   +    +e + + +  ++aG dTts +ls  +y+L+ +P
  CDO70307.1 289 IIQRMVSQGVGLAVQRVKAGSLSRDLF--------YYLVRPApralpNNEDGSepTAPPFRETVSNGTLAMIAGADTTSIALSNLFYFLLSDP 373
                 777777776666666666655444444........3333333334343333332478888888888899*********************998 PP

>> YbjM  Putative inner membrane protein of Enterobacteriaceae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5     2e-05      0.18      10      93 ..      13      94 ..       5     102 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
        YbjM 10 lcfllftlvflsqklevsgasaaeglrgelgLLlfllPGivaallskekrllvpllGallaapvcllvlkl.vlaseeslwqela 93
                + +ll t+v  ++ +++ + +  +++  ++ LLl llP +++a+ls++++   pl+ al+a  + +  l+l v++ + s w+ la
  CDO70307.1 13 SDVLLGTVVSGLVAHQIFKRFEPDSILAHFTLLL-LLPPALSAFLSSSHN--FPLASALIAFGTYWSTLTLsVIVYRLSPWHPLA 94
                4467778888888888888999999999998877.8999*******9987..588899999887777777734567789999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2574.66
//
Query:       CDO70308.1  [L=1370]
Description: hypothetical protein BN946_scf184370.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-11   43.9   0.0    7.9e-09   36.0   0.0    3.5  3  RA        Ras association (RalGDS/AF-6) domain
    1.1e-06   28.1   0.4    2.9e-06   26.8   0.0    2.0  2  SH3_1     SH3 domain
    0.00073   19.3   0.1     0.0023   17.8   0.0    2.0  2  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> RA  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.3e-12   7.9e-09       4      76 ..     632     706 ..     629     713 .. 0.94
   2 ?    3.1   0.0     0.025   1.5e+02      24      43 ..     871     890 ..     853     895 .. 0.82
   3 ?   -1.0   0.0      0.46   2.8e+03      44      74 ..     910     938 ..     900     956 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.3e-12
                 EEEEEETTT-TT...EEEEEEETTSBHHHHHHHHHHHCT-..GGGGCCEEEECCCTTTTEEEEE-TTSBCHHHHCC CS
          RA   4 vlkVytedlkpgt.tyksikvsststaqeViealLekfgl..edspedyvLveskerggeerkLdddecplqiqlq 76 
                 v++V+ +d+ ++  t+k+++++ +++a +++++++++f+l   ++++dy+L   k  +g+  +L + e+pl +++ 
  CDO70308.1 632 VVRVFAGDHLQTEaTFKTVLLNASTSASDLVRQAIQRFRLpaGEDEKDYYLT-IKQVEGSSAVLRPEERPLVVFES 706
                 89*******99889*************************************7.99999*************99876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.025
                 ETTSBHHHHHHHHHHHCT-G CS
          RA  24 sststaqeViealLekfgle 43 
                 +++ t+ eVie+ L++fg++
  CDO70308.1 871 PKNITVAEVIEQGLDRFGIP 890
                 6899**************94 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.46
                 GGGCCEEEECCCTTTTEEEEE-TTSBCHHHH CS
          RA  44 dspedyvLveskerggeerkLdddecplqiq 74 
                 +s  +y L  ++e  g+er+L ++ ++ +++
  CDO70308.1 910 SSRVRYGL--TVEVNGKERELAPSSKVIDAF 938
                 67778999..999**********99998775 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.8e-10   2.9e-06       2      48 .]      53      99 ..      52      99 .. 0.96
   2 ?   -2.9   0.2      0.92   5.5e+03      19      32 ..    1093    1106 ..    1092    1107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.8e-10
                ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1  2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48
                Al+ ++a+ ++  +  kGD +++ ++s++ Ww +r+  t ++G+iP+
  CDO70308.1 53 ALHSFAATVEGQANVVKGDSLFLMDDSNSYWWLVRVLKTQEVGYIPA 99
                999999999999999*******************************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.92
                  TEEEEEEEECSSSE CS
       SH3_1   19 GDviivleksedgW 32  
                  G+++ +++ +e++W
  CDO70308.1 1093 GETYDISHIVEEEW 1106
                  99************ PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   6.9e+03       7      19 ..       7      19 ..       6      20 .. 0.86
   2 !   17.8   0.0   3.8e-07    0.0023       1      45 [.      53      99 ..      53     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
       SH3_9  7 preddeLsLqrGD 19
                +++d+e+s+ ++D
  CDO70308.1  7 YPSDEEHSVLEDD 19
                56899*******9 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.8e-07
       SH3_9  1 AlypyepreddeLsLqrGDvitvieesedgWlegs.l.tGrtGlvPa 45
                Al+ ++++ +    + +GD ++++++s+++W++++ l t++ G+ Pa
  CDO70308.1 53 ALHSFAATVEGQANVVKGDSLFLMDDSNSYWWLVRvLkTQEVGYIPA 99
                7888999999999999******************9856********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1571  (0.0876234); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.53
# Mc/sec: 7824.17
//
Query:       CDO70309.1  [L=240]
Description: hypothetical protein BN946_scf184370.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   12.7   1.1       0.17   11.9   1.1    1.4  1  DUF2798   Protein of unknown function (DUF2798)


Domain annotation for each model (and alignments):
>> DUF2798  Protein of unknown function (DUF2798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.1   9.7e-06      0.17      27      48 ..      21      42 ..      18      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-06
     DUF2798 27 lsaWlkawllAwpvAfpivllv 48
                ++a lkaw lAwp+ fp + +v
  CDO70309.1 21 FRAILKAWTLAWPLTFPDAHVV 42
                7999************976666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1718.58
//
Query:       CDO70310.1  [L=782]
Description: hypothetical protein BN946_scf184370.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-36  124.5   0.0    1.1e-35  123.2   0.0    1.7  1  CLP1_P           mRNA cleavage and polyadenylation factor CLP
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.035   14.2   0.0    1.3  1  AAA_14           AAA domain
       0.12   12.3   0.0       0.19   11.6   0.0    1.2  1  ATPase_2         ATPase domain predominantly from Archaea
       0.17   11.7   0.0       0.35   10.6   0.0    1.5  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
       0.72    8.6  11.2        3.9    6.2  11.7    1.7  2  Nucleo_P87       Nucleopolyhedrovirus capsid protein P87
          4    6.6  13.8        6.3    6.0  13.8    1.3  1  ORC6             Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   3.5e-39   1.1e-35       1     187 [.     376     581 ..     376     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 3.5e-39
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtislalverpidveegfsldapl.vyffGdtspsdnpslylalvkelareveek.... 94 
                 Gpk++GKST+arl lN++l k+r+++y+++D+Gqse++p g++sl +ve+pi ++ + +++ p+  +++G tsp+++ps+yl+++++l++++e      
  CDO70310.1 376 GPKNAGKSTFARLVLNRLLCKYRRVAYLECDLGQSEFAPGGMVSLNIVEQPIFGPPFSHPTIPFaAHYIGATSPRSSPSHYLDCIQALIQQYELDvqna 474
                 9*************************************************************9845777************************887777 PP

      CLP1_P  95 ........leenkkakasgliIntpGwvkglgaellleliealepdvvvvldq...eellnelkrdlp.....lskvkv.vklpkspgvvqrsreerre 176
                          e  + + + +l++nt+Gw kglga++  ++ +++ p++v  l     e++ +   +++        +v+v +++p spg+   s+ ++++
  CDO70310.1 475 plddeqaeDEHGRIVSSIPLVVNTMGWTKGLGADIARKVEDIVGPTAVFSLAGagiEDDPSYAVSAAStsghgAPRVHViESVPPSPGA---SHHTAAD 570
                 7666654444445578889*****************************99987555444444455554233333333331345555555...89999** PP

      CLP1_P 177 lreerireYFy 187
                  r+ +i +YF+
  CDO70310.1 571 HRNIAILSYFH 581
                 **********9 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.2e-05     0.035       2      40 ..     369     407 ..     368     420 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldd 40 
                 r++++++G++ +GK+t+++ ++++ll k +++ y+++d 
  CDO70310.1 369 RHVYLVKGPKNAGKSTFARLVLNRLLCKYRRVAYLECDL 407
                 6799******************99999999999999986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05      0.19      20      54 ..     369     403 ..     363     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienledkdkyviyy 54 
                 +++y++ Gp++ GK+++ + ++++l+ k  +v y+
  CDO70310.1 369 RHVYLVKGPKNAGKSTFARLVLNRLLCKYRRVAYL 403
                 689**********************9888888885 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012      0.35      19      50 ..     369     400 ..     361     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
  DNA_pol3_delta2  19 ahayLfeGdegigkkelalnlakallceekne 50 
                       h yL++G++++gk ++a  + ++llc+ ++ 
       CDO70310.1 369 RHVYLVKGPKNAGKSTFARLVLNRLLCKYRRV 400
                      59*************************98764 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  11.7    0.0013       3.9     295     426 ..      13     157 ..       3     163 .. 0.60
   2 ?   -0.9   0.0      0.19   5.6e+02      98     128 ..     453     483 ..     435     491 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
  Nucleo_P87 295 maeqslqspaqtpaperslqsPeqtparrk.stkmtee.slqsPaqtpawqtpattptretssdteaiksepektleeklre.klp........sdlsa 382
                   +q  ++p+ t +p      P+++pa rk st+ +++ s q+P+ +   ++pa  p ++++++ + +k  +e++     ++  +          +  +
  CDO70310.1  13 AQNQGQPAPQGTSKPASAPSPPASEPAPRKnSTPAKPTsSAQKPPSKRKPSAPAINPPKQKKPKSQHRKGAQEHSGRYFAQQdVFKaqddvivvDNDDN 111
                 445667778888887777777777776443145555444888998888888999999888888888777765554332222202224444555422334 PP

  Nucleo_P87 383 qssvpdkkseasavlptekr..kRrrarklqelssdededssdeke 426
                 +ssv  ++ ++ + lp ++   kR+ +++ +  +s++++++++ +e
  CDO70310.1 112 ESSVATSSASSGDELPPTRTggKRAWSPSAPLADSSDEDEDDEADE 157
                 4555555555555565444323899999887777777775666555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
  Nucleo_P87  98 saklldkiqsalqeYetyvnedgldnvvidd 128
                 + + ld iq ++q+Ye  v++  ld+ +++d
  CDO70310.1 453 PSHYLDCIQALIQQYELDVQNAPLDDEQAED 483
                 6778999*************99999988876 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  13.8    0.0021       6.3      90     180 ..      29     122 ..      12     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0021
        ORC6  90 satstPskspsspst..dpkslrkqlfsTPtKsktlktalsasksssplkrrrklaneedgeeeeed..apswvstsir.....dsrpeisrtlspsks 179
                 sa+s P ++p+ + +  +p++ +++++  P+K+k+++ a++++k++ p++  rk a+e +g    ++   +++           d+++++s+    s s
  CDO70310.1  29 SAPSPPASEPAPR-KnsTPAKPTSSAQKPPSKRKPSAPAINPPKQKKPKSQHRKGAQEHSGRYFAQQdvFKAQ-----DdvivvDNDDNESSVATSSAS 121
                 4444444444444.359999999999999*****************************998754333133322.....122344444444444344444 PP

        ORC6 180 l 180
                 +
  CDO70310.1 122 S 122
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 4969.06
//
Query:       CDO70311.1  [L=227]
Description: hypothetical protein BN946_scf184370.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-27   93.8   0.1    1.4e-26   92.9   0.1    1.5  1  WGG       Pre-rRNA-processing protein TSR2


Domain annotation for each model (and alignments):
>> WGG  Pre-rRNA-processing protein TSR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.1   7.9e-31   1.4e-26       5      80 .]      57     133 ..      53     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 7.9e-31
         WGG   5 valilhlWtaLklavengwggpdsadkrdwlagaivdlfk.akeeldqedvedvLlqvmedeFevnveDdSaeevAe 80 
                 v + l  W+aL++av++gwggp+sa+kr+wla+++vd f+ +++++d+e+ved+Llqvm deF+ n+eD+Sae vA+
  CDO70311.1  57 VIARLAYWPALRIAVDQGWGGPESAEKRTWLASVLVDDFEeQDPKPDAEYVEDRLLQVMADEFDANLEDGSAEAVAK 133
                 7788999********************************746677******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1576.78
//
Query:       CDO70312.1  [L=362]
Description: hypothetical protein BN946_scf184370.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-51  173.6   0.0    1.2e-50  171.7   0.0    1.8  2  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    1.9e-36  125.2   0.4    6.8e-23   81.3   0.1    2.3  2  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
  ------ inclusion threshold ------
      0.013   15.9   1.3      0.088   13.2   0.1    2.6  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
      0.043   13.1   0.4        4.6    6.6   0.0    2.7  3  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.36   1.6e+03      15      39 ..      17      40 ..       7      55 .. 0.73
   2 !  171.7   0.0   2.6e-54   1.2e-50       1     167 []     192     359 ..     192     359 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.36
                HHTS-GGGEE--EEBSSSTETTEEH CS
     Ldh_1_C 15 kagvtprsvkvtViGgHsgvtiipl 39
                 +  ++r++kv V+G  +g++ +pl
  CDO70312.1 17 FSSSATRQSKVAVLGAGGGIG-QPL 40
                455589999******999976.565 PP

  == domain 2  score: 171.7 bits;  conditional E-value: 2.6e-54
                 THHHHHHHHHHHHHHHTS-GGGEE--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHTTHTE CS
     Ldh_1_C   1 TtLDivRaktflaekagvtprsvkvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallrdtke 99 
                 TtLD+vRa+ fla  ag++p++vkvtV+GgHsg ti+pllsq+ + ++++ + +e+l++r+q+ggdevv+ak+GagsatlsmA+Aga+f+ ++lr++++
  CDO70312.1 192 TTLDVVRAQRFLAAVAGTDPKNVKVTVVGGHSGATIVPLLSQTPQGKSITGEAYEKLVHRIQFGGDEVVQAKEGAGSATLSMAYAGARFTGDILRALNG 290
                 9************************************************************************************************** PP

                 EEEEEEEEESCCCECCS...SEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCCH CS
     Ldh_1_C 100 ilsagvyldgevglkdq...eieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekglefv 167
                 +  +gv+++  v ++     +i++fs+ v lg nGvek++  ++l+++e++ le++  eLkk+iekg++fv
  CDO70312.1 291 E--KGVVTPTFVKSPLFaeqGIDFFSSNVELGPNGVEKIHGLGELSEQEKKLLEACLPELKKNIEKGKKFV 359
                 *..********998755555************************************************996 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   2.1e-14   9.3e-11       2      56 ..      26      78 ..      25      91 .. 0.92
   2 !   81.3   0.1   1.5e-26   6.8e-23      48     141 .]      95     190 ..      87     190 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 2.1e-14
                EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS- CS
     Ldh_1_N  2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvk 56
                kvav+Ga+GgiGq+l+lll+ ++ + el L+Di+   ++Gva+d+shi+t ++v+
  CDO70312.1 26 KVAVLGAGGGIGQPLSLLLKLNPHVTELSLYDIR--GAPGVAADVSHIDTGSEVR 78
                9*********************9999********..9************988665 PP

  == domain 2  score: 81.3 bits;  conditional E-value: 1.5e-26
                 HCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  48 histflsvkvkvsekeeealkdadvvvitagvprkpGetRddLlkvNakIvkeiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 h ++ ++v+++  +k  +al+++dvvvi+agvprk  +tRddL+++Na+Iv+++++aia v+p+a+vlv+sNPv+    i+  v+ ka+ ++++ ++g
  CDO70312.1  95 HRTALIQVRGYPADKLDQALEGTDVVVIPAGVPRK--MTRDDLFNTNASIVRDLAAAIARVSPKAKVLVISNPVNstvpIVSAVFEKAGVYDPAHIFG 190
                 66778889999999*********************..9********************************************************9998 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     2e-05     0.088       1      35 [.      26      60 ..      26     168 .. 0.87
   2 ?    0.8   0.1      0.14   6.4e+02       1      25 [.     215     237 ..     215     262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssr 35
                    kva++Ga G +Gq l  lL+ +p+v+++ l+  + 
      CDO70312.1 26 KVAVLGAGGGIGQPLSLLLKLNPHVTELSLYDIRG 60
                    7**************************99998776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
                     EEEEETTTSHHHHHHHHHHHCTSSE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpev 25 
                     kv +vG  G  G+ ++ lL++ p+ 
      CDO70312.1 215 KVTVVG--GHSGATIVPLLSQTPQG 237
                     689999..99999999999998875 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.001       4.6      33      59 ..      21      47 ..       9      57 .. 0.85
   2 ?    3.8   0.1    0.0072        32      70     104 ..     107     142 ..      92     170 .. 0.79
   3 ?   -3.4   0.0       1.2   5.2e+03      33      45 ..     210     222 ..     202     243 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.001
                   --TT-EEEEE---TTTHHHHHHHHHCT CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLlek 59
                    ++  kv+v+G++  +g+pl+llL+ +
     CDO70312.1 21 ATRQSKVAVLGAGGGIGQPLSLLLKLN 47
                   567899***************999754 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0072
                    SCCHHHHHCCSSEEEE-SS-TT-B-GGGS.-TT-EE CS
  THF_DHG_CYH_C  70 tkdlaeitreadivvvavGkpelikaemv.kegavv 104
                    +++l++ ++  d+vv+ +G+p+ ++++ + +++a +
     CDO70312.1 107 ADKLDQALEGTDVVVIPAGVPRKMTRDDLfNTNASI 142
                    678999999************877766542555544 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.2
                    --TT-EEEEE--- CS
  THF_DHG_CYH_C  33 elegkkvvvvGrs 45 
                    + ++ kv+vvG +
     CDO70312.1 210 DPKNVKVTVVGGH 222
                    5555566666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2631.91
//
Query:       CDO70313.1  [L=321]
Description: hypothetical protein BN946_scf184843.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2279.51
//
Query:       CDO70314.1  [L=349]
Description: hypothetical protein BN946_scf184843.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-06   26.7   0.0    5.8e-06   26.1   0.0    1.3  1  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.2e-10   5.8e-06      29     126 ..      65     170 ..      38     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.2e-10
                 HHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC..CHHHHHHHHHHHHHHH.......HSSS---HHHHHHHTTTSS-HHHHHHHHHHH CS
    Cyclin_N  29 emRailidwlvevaekfkltpetlflavnyldRflskksvpkd..klqlvgatcLllAaKv.......eeisppkledlvyitdeafteeeilemErli 118
                 +  +  ++++++v  k +++   l+++++y++R   + ++  +    ++v++++L+lA K+        ++s+ k  +++  t ++f +++i  +Er++
  CDO70314.1  65 TEHSKFLKFVTDVIDKAEVKVPALLVTLVYINRAKPHIQIALEqwANERVFLGALILANKLisrlsqyLNDSTLKNVHWALCT-GVFGKRDIGWIEREF 162
                 5567899***************************99555555536889*************7777777666666666776665.4************** PP

                 HHHTTT-- CS
    Cyclin_N 119 LetLnfdl 126
                 L++L+f+l
  CDO70314.1 163 LDVLDFEL 170
                 ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2598.92
//
Query:       CDO70315.1  [L=227]
Description: hypothetical protein BN946_scf184843.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-10   39.3   6.2    1.1e-09   38.9   6.2    1.1  1  zf-C4H2        Zinc finger-containing protein
     0.0027   17.1   8.8     0.0037   16.6   8.8    1.3  1  DUF3450        Protein of unknown function (DUF3450)
  ------ inclusion threshold ------
      0.083   12.1   4.6       0.11   11.7   4.6    1.1  1  TMPIT          TMPIT-like protein
       0.27   11.3   8.6       0.95    9.5   7.8    1.9  2  Laminin_II     Laminin Domain II
       0.42   10.6   3.8       0.64   10.1   3.8    1.4  1  DUF1664        Protein of unknown function (DUF1664)
        0.6    9.8   5.7        1.5    8.5   0.2    2.3  2  DUF4972        Domain of unknown function (DUF4972)
          1    8.6   8.4        1.5    8.1   8.4    1.2  1  FAM76          FAM76 protein
        1.4    9.3  15.0        1.7    9.0   1.6    2.9  3  DUF1690        Protein of Unknown function (DUF1690)
        2.3    6.9   9.1        2.8    6.6   9.1    1.1  1  BshC           Bacillithiol biosynthesis BshC
        2.4    6.7   8.1          3    6.4   8.1    1.0  1  Peptidase_S46  Peptidase S46
        2.4    8.0  12.6        8.1    6.3   6.6    2.7  2  DivIC          Septum formation initiator
        2.6    7.0  14.0        3.5    6.6  14.0    1.1  1  Atg14          Vacuolar sorting 38 and autophagy-related subu
        2.9    5.7   4.5        3.1    5.6   4.5    1.1  1  V_ATPase_I     V-type ATPase 116kDa subunit family
        3.7    7.3  10.1         12    5.7  10.1    1.7  1  DUF724         Protein of unknown function (DUF724)
        8.7    7.0  10.2         30    5.3   0.8    2.2  2  YabA           Initiation control protein YabA


Domain annotation for each model (and alignments):
>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   6.2   9.3e-13   1.1e-09       4     164 ..      44     211 ..      41     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 9.3e-13
     zf-C4H2   4 eirektleleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakkly.eeykklkeevnelrs 101
                 e+++  l l+   +++ ++  ale+++k +++ k+++++Le+E++  ++ Lr +++D ++ +      ++e ++  +k+k ++  ey++ k++v++lr+
  CDO70315.1  44 ELKKHALTLQLHTAHILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKIKTISeGEYAAAKNDVDRLRQ 142
                 78888999999999*******************************************99987666666777777778888887359************* PP

     zf-C4H2 102 elglekledleeeeeellkeeifekqklk.............aaavelkkesstapappapptsllskssqapsap 164
                 elg  +l++l+++ ee  + e+++   l+             a      +     p+p + p  +++ s+++p++ 
  CDO70315.1 143 ELGQPPLPSLQTTLEEK-SAEYLKALRLQaeaanaatgtkraA------DDLGADPQPAKRPRGRPKGSKSKPKSK 211
                 ********998766654.4455555555523333332222210......112222333333444444344444332 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   8.8   3.1e-06    0.0037      17      98 ..      58     144 ..      47     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiaslee.....qieeieeierel 98 
                  + +a+++ e+ ++a ++  ++++kl+ e+q ll+ +r+++e  ++++++++ l++ v++++++i+ + e      +++++++++el
  CDO70315.1  58 HILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKIKTISEgeyaaAKNDVDRLRQEL 144
                 566789999********************************************************9876422222677777777776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.6   9.5e-05      0.11       2      98 ..      71     165 ..      70     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkknglylk 98 
                 + +++l+++ ++le++ +++ + l+e+++  +k   ++++ +k+++el++++k++++   +  ++ v++l++el +    l +++ +l +k+  ylk
  CDO70315.1  71 KAIQDLKEQKNKLESERQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKIKTISEGEYAAAKNDVDRLRQELGQP--PLPSLQTTLEEKSAEYLK 165
                 56899****************************************************99999999999999998654..355556666666666665 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.8    0.0008      0.95      41      99 ..      60     122 ..      38     124 .. 0.83
   2 ?    4.2   0.3     0.034        40      62      97 ..     109     142 ..     103     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0008
                 XXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.......HHHHHHHHHHHH CS
  Laminin_II  41 eetnekvkdankairdArrsvkkLeklapqLldklkelkqleeasss....lsdniseikelI 99 
                    ++ ++++nkai+d +++  kLe + ++Ll+ l+e+++ +++       l +++se++  I
  CDO70315.1  60 LSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVNEDRDKADIqeatLNKEVSELQHKI 122
                 45688999********************************99985547789******998877 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.034
                 XXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHH CS
  Laminin_II  62 kkLeklapqLldklkelkqleeassslsdniseike 97 
                  +L+k++ +L  k+k++ + e a  + +++++++++
  CDO70315.1 109 ATLNKEVSELQHKIKTISEGEYA--AAKNDVDRLRQ 142
                 57999999999999999999988..45888888875 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.8   0.00054      0.64      48     112 ..      74     139 ..      41     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00054
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseige.dvesvkeaveg 112
                 ++l++ +++l++ +++L + + +v++  d+     + +++ev+e+++++++i+e +  + k+ v  
  CDO70315.1  74 QDLKEQKNKLESERQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKIKTISEgEYAAAKNDVDR 139
                 567777889999999999999999999999988888999999999999999965255555555555 PP

>> DUF4972  Domain of unknown function (DUF4972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.2     0.051        61      83     112 ..      65      93 ..      55     108 .. 0.75
   2 ?    8.5   0.2    0.0013       1.5      78     112 ..     109     143 ..     104     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.051
     DUF4972  83 aivklkesiakikegnkaeaeeeadrlike 112
                 a+ + +++i+ +ke++++  e+e +rl++ 
  CDO70315.1  65 ALEQKNKAIQDLKEQKNKL-ESERQRLLNC 93 
                 688999*******997765.6777888764 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
     DUF4972  78 aiLedaivklkesiakikegnkaeaeeeadrlike 112
                 a L+ ++ +l++ i++i eg+ a a++++drl +e
  CDO70315.1 109 ATLNKEVSELQHKIKTISEGEYAAAKNDVDRLRQE 143
                 78999**************************9776 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.4    0.0013       1.5     235     299 ..      59     122 ..      26     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
       FAM76 235 leqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellkevaelskkk 299
                 + +   +l +k+k i +lk ++ + e+e r++l ++ +e++e  +k + + ++l kev+el++k 
  CDO70315.1  59 ILSAHAALEQKNKAIQDLKEQKNKLESE-RQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKI 122
                 4456678999*********999999876.789999**************************9985 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.8     0.016        20      74     120 ..      52      96 ..      31     101 .. 0.64
   2 ?    9.0   1.6    0.0015       1.7      69     114 ..     100     144 ..      95     146 .. 0.87
   3 ?    0.4   0.0      0.68   8.1e+02      33      66 ..     154     187 ..     150     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
     DUF1690  74 delsskalnekieeLrkkleefkkkeeeklpeeveeareevveClre 120
                  +l+++++ +  ++L++k ++ ++ +e  +++++e+ r+ +++Clre
  CDO70315.1  52 LQLHTAHILSAHAALEQKNKAIQDLKE--QKNKLESERQRLLNCLRE 96 
                 444555555555666666666665555..4679999*********98 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0015
     DUF1690  69 eadakdelsskalnekieeLrkkleefkkkeeeklpeeveeareev 114
                 + ++k  +++++ln++++eL++k+++ ++ e +  +++v++ r+e+
  CDO70315.1 100 D-RDKADIQEATLNKEVSELQHKIKTISEGEYAAAKNDVDRLRQEL 144
                 3.57889999********************9999999999999987 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.68
     DUF1690  33 kliqerVaeeLkkLraeeeetlkkfeeklekell 66 
                   ++e+ ae Lk Lr + e + ++  +k +++ l
  CDO70315.1 154 TTLEEKSAEYLKALRLQAEAANAATGTKRAADDL 187
                 5678888888998887777777666665555544 PP

>> BshC  Bacillithiol biosynthesis BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.1    0.0023       2.8     406     497 ..      55     144 ..      33     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0023
                 H-SHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
        BshC 406 ekleelkkklveeaseleldelfeeakeeleeafealkelaakidktleklveanekkilkqlekLekkllkaekrkheeelrqlekikneL 497
                 ++++ l  +++ e++++ ++  ++e+k++le++ ++l + + +++++  k ++ +e+ ++k++++L++k++  ++ +++++ ++++++++eL
  CDO70315.1  55 HTAHILSAHAALEQKNKAIQ-DLKEQKNKLESERQRLLNCLREVNEDRDK-ADIQEATLNKEVSELQHKIKTISEGEYAAAKNDVDRLRQEL 144
                 34455556666667777776.8***********************99766.5889999******************************9998 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.1    0.0025         3     339     469 ..      39     166 ..      29     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0025
                    HHHCT-H.HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH....HH-.HHHHHHHHHHHHHHCHHHHCS--HHHHH CS
  Peptidase_S46 339 lkkdpekkekygkalselealvkekrklaersalleeaessgsellslarklvrlaeerekpdaere.eeyqeralealekeleridkdldaevdk 433
                    l+k++e k+++ ++  + +++++++++l++++ +++ ++ ++ +l s  ++l +  +e +   ++r+ ++ qe +l++  +el+++  ++  e + 
     CDO70315.1  39 LAKTAELKKHALTLQLHTAHILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVN---EDRDkADIQEATLNKEVSELQHK-IKTISEGEY 130
                    456667777888888888999999999999999999999999999999999999888887...44430455566666666666666.344467799 PP

                    HHHHHHHHHHHHHS-GGG--S----SS......-S- CS
  Peptidase_S46 434 avlaallkeyreklkaerlpavdkvlgkeskgdlea 469
                    a ++ +++++r++l++  lp+++++l+++s++ l+a
     CDO70315.1 131 AAAKNDVDRLRQELGQPPLPSLQTTLEEKSAEYLKA 166
                    999999999999999999999999999999333222 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.6    0.0067       8.1       5      50 ..      52      97 ..      49     108 .. 0.69
   2 ?    4.1   1.7     0.032        38      20      56 ..      95     130 ..      91     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0067
                XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  5 fllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdL 50
                ++l++ ++ +   a+ q+++ i++l+++ +kl  e+++L   +++ 
  CDO70315.1 52 LQLHTAHILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREV 97
                6777777777777777777777777777777777777776655555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedy 56 
                 +++++++++   + a+l++e  eL++++k   s+ +y
  CDO70315.1  95 REVNEDRDKADIQEATLNKEVSELQHKIKTI-SEGEY 130
                 5777888888888888888888888888877.34444 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  14.0    0.0029       3.5      30     141 ..      41     165 ..      33     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0029
       Atg14  30 rlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...............k 113
                 ++a lk+   +l+ +   +l+ + + eq++++i+ +k++ ++l s++++l + l+e+++++++ + + +   k++++l++k+k               +
  CDO70315.1  41 KTAELKKHALTLQLHTAHILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKIKtisegeyaaakndvdR 139
                 677888888888888888888888888888888888888888888888888888888888888888888888888888888887666666666666543 PP

       Atg14 114 Rrsdleslqneleerrkkqiaklqdaik 141
                  r++  + q  l + ++++ +k  +++k
  CDO70315.1 140 LRQE--LGQPPLPSLQTTLEEKSAEYLK 165
                 3333..4444444444444444444444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.5    0.0026       3.1      65     144 ..      46     126 ..      26     186 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0026
  V_ATPase_I  65 apeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeeeeeseeeeeekeeeeeeese 144
                 ++++ +l+  ++++ ++++ l++ n+  ++lk+++n+l+ +++ l ++ + ++e+ ++ + +e + ++e ++ +++ ++++
  CDO70315.1  46 KKHALTLQLHTAHILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVNEDrDKADIQEATLNKEVSELQHKIKTIS 126
                 444455566677788888889999999999999999998888877777777766533333333332322222222222222 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.1      0.01        12      99     172 ..      75     178 ..      38     189 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
      DUF724  99 slkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallk..............................ekkeaadkeiarlksea 167
                  lk++++kl++er++l + ++e ++++ k++ + + l+k+++el+ + +++                               e+k+a+  +  rl++ea
  CDO70315.1  75 DLKEQKNKLESERQRLLNCLREVNEDRDKADIQEATLNKEVSELQHKIKTISegeyaaakndvdrlrqelgqpplpslqttlEEKSAEYLKALRLQAEA 173
                 344444444444444444444444444444444444444444444433333322222223555555555555556666666666666666666666666 PP

      DUF724 168 eklee 172
                 +++ +
  CDO70315.1 174 ANAAT 178
                 66655 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.7     0.047        57      15      61 ..      57     103 ..      31     112 .. 0.70
   2 ?    5.3   0.8     0.025        30      16      53 ..     107     153 ..      95     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX CS
        YabA  15 eqleelleeleelkeelaelleenaeLeleneklrerleeeekkeke 61 
                  ++ + ++ le+ ++++++l e+ ++Le e ++l + l+e ++++++
  CDO70315.1  57 AHILSAHAALEQKNKAIQDLKEQKNKLESERQRLLNCLREVNEDRDK 103
                 45666677788888888888999999999999988888444433333 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH........X CS
        YabA  16 qleelleeleelkeelaelle.enaeLeleneklrerl........e 53 
                 q ++l++e++el+++++++ e e a+ + + ++lr++l        +
  CDO70315.1 107 QEATLNKEVSELQHKIKTISEgEYAAAKNDVDRLRQELgqpplpslQ 153
                 556789999*******9998846677888899999999665555441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2115  (0.117965); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 1652.14
//
Query:       CDO70316.1  [L=135]
Description: hypothetical protein BN946_scf184843.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0053   17.5   0.0      0.014   16.2   0.0    1.6  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.6e-07     0.014       3      93 .]      47     133 ..      45     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.6e-07
  GPI-anchored   3 PssgevvtagkpvtitWkdsgtdpgtvtlvLcagss..nnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                   P +g+v+  g+  ++tW++s+  p ++t +L +     + + +   + ++ +   g  ++tvp  + +g++Y l ++ +s +    +S+ Fti
    CDO70316.1  47 PHAGTVWYKGQRHNVTWDTSD-HPVNITNYLGRIMLrkGLIATPLILEENFDILLGRIEVTVPW-VTPGDDYSLVLYGDSGN----FSPMFTI 133
                   99*****************86.576666555444331133566677777888778*******77.999*********77774....9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 929.63
//
Query:       CDO70317.1  [L=137]
Description: hypothetical protein BN946_scf184843.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-05   25.5   0.0    2.2e-05   25.2   0.0    1.1  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.2e-09   2.2e-05       3      93 .]      45     131 ..      43     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.2e-09
  GPI-anchored   3 PssgevvtagkpvtitWkdsgtdp......gtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                   P +g+v+t g+  ++tW++ +         +  t++L++g     ++   +a+g +   g  ++tvp  + ++++Y + +  +s +    +S+ Fti
    CDO70317.1  45 PHAGTVWTKGQRHNVTWDTTD--ApvnitnKVGTILLRKGDL---TTPLVLAAGFDILLGRIEVTVPW-VIPDSDYSVVLFGDSGN----FSPEFTI 131
                   99*****************76..2356664666777777766...8999*******999*******88.6678********77774....9****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1077.15
//
Query:       CDO70318.1  [L=768]
Description: hypothetical protein BN946_scf184843.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-09   35.9  16.3    1.1e-08   34.7  16.3    1.6  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.01   15.6  14.9       0.02   14.7  14.9    1.5  1  Prok-RING_4  Prokaryotic RING finger family 4
       0.23   11.4   1.7       0.37   10.7   1.7    1.2  1  TFIIA        Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7  16.3   1.9e-12   1.1e-08       3      48 ..     711     760 ..     709     762 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.9e-12
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH....TT-B-TTT--B-- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllk....rkkkCpiCrrpie 48 
                 + CviC  + r+++++pC++l+lC +C e+l +    +k++Cp+Crr++e
  CDO70318.1 711 RNCVICTVEARDIICWPCRCLALCDDCRENLASrssaSKHTCPCCRRSVE 760
                 68*****************************9899************997 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  14.9   3.4e-06      0.02       1      42 [.     713     761 ..     713     765 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-06
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCfdskdls......sCPlCqrrisk 42 
                  Cv+C+ + +++i  pC  l +C++C ++  +       +CP C+r +++
   CDO70318.1 713 CVICTVEARDIICWPCRCLaLCDDCRENLASRssaskhTCPCCRRSVEG 761
                  *************************9987433347789*******9876 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   6.3e-05      0.37     301     372 ..     541     623 ..     492     625 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.3e-05
       TFIIA 301 raeessladlseilqlDGagddsde...........eeeeeesdedsdsessddedeqveEDplNSdDDvddeddddlfdtdn 372
                 ++++++ ++ se++ lDG   d  +             e+ + ded++ + +d+ede  e  +  SdDD+d+ +d+ + d ++
  CDO70318.1 541 SKKSRERSAPSEVVVLDGVVLDVRRpstedpykrflRGEDVSDDEDDEFNPDDQEDEAGETPATLSDDDEDEANDAGVVDVED 623
                 1111233467889999995444444466677888973334444555555555668998999*************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.57
# Mc/sec: 4085.51
//
Query:       CDO70319.1  [L=437]
Description: hypothetical protein BN946_scf184843.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2828.52
//
Query:       CDO70320.1  [L=326]
Description: hypothetical protein BN946_scf184843.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-32  112.4   3.3    3.2e-32  111.0   3.3    1.8  1  HSF_DNA-bind     HSF-type DNA-binding
    0.00046   19.2   1.6    0.00061   18.8   1.6    1.1  1  DUF812           Protein of unknown function (DUF812)
     0.0046   17.2   0.3     0.0046   17.2   0.3    2.4  2  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
      0.006   16.3   1.3      0.006   16.3   1.3    2.1  2  Use1             Membrane fusion protein Use1
  ------ inclusion threshold ------
      0.018   15.3   1.0      0.018   15.3   1.0    2.1  2  ATG16            Autophagy protein 16 (ATG16)
      0.018   15.6   1.9      0.018   15.6   1.9    1.8  2  APG6_N           Apg6 coiled-coil region
      0.022   14.8   0.4      0.042   13.9   0.4    1.4  1  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
      0.027   13.8   1.7      0.044   13.1   1.7    1.2  1  DUF3450          Protein of unknown function (DUF3450)
      0.037   14.3   0.4      0.082   13.2   0.4    1.7  1  DUF2293          Uncharacterized conserved protein (DUF2293)
      0.037   14.5   1.1      0.068   13.6   0.2    1.8  2  Goodbye          fungal STAND N-terminal Goodbye domain
      0.047   13.1   1.3       0.35   10.2   0.5    2.0  2  FliD_C           Flagellar hook-associated protein 2 C-termin
       0.24   11.8   3.9       0.24   11.8   2.0    2.0  2  Snapin_Pallidin  Snapin/Pallidin
       0.29   10.9   1.5       0.54   10.1   1.5    1.4  1  DivIC            Septum formation initiator
       0.92    9.7   4.5       0.29   11.3   0.9    1.9  2  Fib_alpha        Fibrinogen alpha/beta chain family
        7.3    6.1   7.5         13    5.2   7.5    1.6  1  CPSF73-100_C     Pre-mRNA 3'-end-processing endonuclease poly


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   3.3   2.7e-35   3.2e-32       1      96 []     139     236 ..     139     236 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 2.7e-35
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTB--TTSEEEEESS--XXXXXXXXXXX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkeekkkkkskvweFshenFkrgkpelLkkik 94 
                   F+kkLyk+led   ++++sW ++g++fvvkd++ef+k++lp++fkhsnf+sFvrqLn Y+F+kvk+++ +++  +++w+F+h+ F+ ++++ L++ik
    CDO70320.1 139 FVKKLYKMLEDtsfSDVVSWGPHGDCFVVKDMNEFTKSILPRMFKHSNFASFVRQLNKYDFHKVKNTD-DNQFGEHSWTFRHPDFHADRRDALENIK 234
                   9*********9888999**********************************************99655.6777779********************* PP

                   XX CS
  HSF_DNA-bind  95 rk 96 
                   rk
    CDO70320.1 235 RK 236
                   *7 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.6   5.1e-07   0.00061     213     377 ..      69     304 ..      33     318 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.1e-07
      DUF812 213 naaelaaeqeweeeaneqgl....asr.lteeeykkrkkeklqkrlaeqlrkaalkseeaessasksksdlaellsef..................... 285
                 ++   +++  w+++ +++++    +sr l+e+   +++++  ++   ++ +++  + + +++++ +s+sd+ ++l ++                     
  CDO70320.1  69 HSLSASSTLPWSHQRSSSSRedlpSSRrLSESSPHRSERDMARESSHDHHHSSSNSVKHETEDSMPSTSDFVKKLYKMledtsfsdvvswgphgdcfvv 167
                 333333333333333333333333333233333333333333333333333333333333344444444444444444444444433333333333333 PP

      DUF812 286 ...................seksetdslktkgsrfthaeklqftke.....................................ela.kkaeteeelkkk 327
                                                +s +++ +k +f k                                      + + ++ ++ +    +
  CDO70320.1 168 kdmneftksilprmfkhsnF-----------ASFVRQLNKYDFHKVkntddnqfgehswtfrhpdfhadrrdalenikrkvpaA-RkSTGRSANSPSPA 254
                 32222222113333332221...........22222333333322255566667777888888888888999999888876542.15778888888899 PP

      DUF812 328 reeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneel 377
                  ++++e+lq qie+++++ ee+++ i++le++ + v +e+ + +++ +++
  CDO70320.1 255 SNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMAQQ 304
                 9999******************************9999988777766655 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   2.3      0.75   8.9e+02      83     144 ..      87     148 ..      79     153 .. 0.63
   2 !   17.2   0.3   3.8e-06    0.0046      44      85 ..     255     296 ..     248     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.75
      CENP-Q  83 rkeklkkehvllqesdseelslleassdevlgeasgtvfsdlepeldeellpllqqLgshLe 144
                  +e l ++  l ++s +++++++  +s+  ++++s+++ ++  +++ + +++ +++L + Le
  CDO70320.1  87 SREDLPSSRRLSESSPHRSERDMARESSHDHHHSSSNSVKHETEDSMPSTSDFVKKLYKMLE 148
                 44444444456666666666666666665666666677777777778888888888877776 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.8e-06
      CENP-Q  44 elhslelLeaeiekeeralerdyeaLreLeknakaearerke 85 
                 ++ s+e L+a+ie+++r  e++ + +r+Le+n ++  +e   
  CDO70320.1 255 SNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVN 296
                 5679****************************9988777555 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.0     0.069        83      90     156 ..      78     142 ..      52     153 .. 0.67
   2 !   16.3   1.3     5e-06     0.006      92     187 ..     216     313 ..     180     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.069
        Use1  90 eeskeekeeskereeaskelrqkekakyqkelrkellgkndsssspekekeskkkksdedldavlkk 156
                   s++ +++s+e  ++s+ l + +  ++++++  e  ++ ++sss++ ++e+  ++s  +++  +kk
  CDO70320.1  78 PWSHQRSSSSREDLPSSRRLSESSPHRSERDMARESSHDHHHSSSNSVKHET--EDSMPSTSDFVKK 142
                 3357777788899999999999999999999999998888877766644433..3444444444444 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5e-06
        Use1  92 skeekeeskereeaskelrqkekakyqkelrkellgkndsssspekekeskkk..ksdedldavlkkhenlqEklaeemlsLarnLKenslaasqiik 187
                 + ++++ + +r +a++++++k  a+ ++  r+    +  s++s e+ + + ++  + +e++ a+++  e    ++ +em++  rn+ ++  ++++ i+
  CDO70320.1 216 TFRHPDFHADRRDALENIKRKVPAARKSTGRSANSPSPASNASVEALQAQIERmqRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMAQQDGLMQNLIQ 313
                 45566666778889999999999999999999998888877766655444444669999**********9999***********************98 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.3      0.72   8.6e+02      53      60 ..     100     107 ..      52     150 .. 0.47
   2 ?   15.3   1.0   1.5e-05     0.018      28     130 ..     224     306 ..     185     320 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.72
       ATG16  53 sskksake 60 
                 ss + +++
  CDO70320.1 100 SSPHRSER 107
                 11111111 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.5e-05
       ATG16  28 ldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerla 126
                 +dr +ale  ++k ++a           ++++ ++          ++ ++++++ + +l+++ + +++ ++e+a  +++l++  q   +++ + ++++a
  CDO70320.1 224 ADRRDALENIKRKVPAA-----------RKSTGRS---------ANSPSPASNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMA 302
                 45555555555555222...........2222222.........3344589999999999999999999999999999999999999999999888888 PP

       ATG16 127 elea 130
                 +   
  CDO70320.1 303 QQDG 306
                 8765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       8.9   1.1e+04      46      51 ..     119     124 ..      97     146 .. 0.53
   2 ?   15.6   1.9   1.5e-05     0.018      25     101 ..     227     311 ..     183     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.9
      APG6_N  46 deelee 51 
                 +++ ++
  CDO70320.1 119 HSSSNS 124
                 222222 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.5e-05
      APG6_N  25 rdaYeeflkklkkekkeeek............qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerf 101
                 rda+e+  +k+ + +    k            ++ ++e+l+ ++e++++++ee+ + ++ le++ +++ +e+ + ++  ++ +   ++ 
  CDO70320.1 227 RDALENIKRKVPAAR----KstgrsanspspaSNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMAQQDGLMQNL 311
                 444444444444443....1445588888888999*****************************************9999988766665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   3.5e-05     0.042      47     105 ..     259     317 ..     249     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
  CENP-F_leu_zip  47 aEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnss 105
                     +E  +a++e ++   ee+a++ r le++ +++ se  + ++++ ++   +++L +  ++
      CDO70320.1 259 VEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMAQQDGLMQNLIQYFLQ 317
                     677889999******************************99999998888887665555 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.7   3.7e-05     0.044      15      85 ..     242     312 ..     235     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasle 85 
                 ++t ++a++ + +++a+ ++ q++i++++++++e++a +r+l++  ++   +  + +r +a+q+  +++l 
  CDO70320.1 242 KSTGRSANSPSPASNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMAQQDGLMQNLI 312
                 67778888888899999999999999999999999999999999999999999999999999988887775 PP

>> DUF2293  Uncharacterized conserved protein (DUF2293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   6.9e-05     0.082      30      70 ..     261     303 ..     199     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
     DUF2293  30 grtekiplerrvqlAvlAhiRHthTdYDeLlkegve..reeAR 70 
                 + +++i+  +r q  + AhiR  +T+Y + l e v+  r++A 
  CDO70320.1 261 ALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNfqRNMAQ 303
                 6677888889999999*****************6553366665 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.3   5.1e+03      41      64 ..     119     142 ..      93     152 .. 0.52
   2 ?   13.6   0.2   5.7e-05     0.068      10      67 ..     242     299 ..     239     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
     Goodbye  41 feefrekkeklkealkkilspiql 64 
                 ++++++ k++ ++++ ++  ++++
  CDO70320.1 119 HSSSNSVKHETEDSMPSTSDFVKK 142
                 333334444444444444444444 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.7e-05
     Goodbye  10 keTgkdlkdealkelssvedllkqieaekdkfeefrekkeklkealkkilspiqllgg 67 
                 k+Tg++ + ++    +sve+l++qie+ +  +ee  +  ++l+ + +++ls + ++ +
  CDO70320.1 242 KSTGRSANSPSPASNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQR 299
                 78*****999999999**********************************98877754 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16   1.9e+02     161     185 ..     127     151 ..     113     160 .. 0.87
   2 ?   10.2   0.5    0.0003      0.35     186     238 ..     249     301 ..     228     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.16
                 SS.......SXSHHHHHHHHHHHHH CS
      FliD_C 161 tsqektvtsdsglatrlenllksyv 185
                  ++e+++ s+s ++++l+++l++++
  CDO70320.1 127 HETEDSMPSTSDFVKKLYKMLEDTS 151
                 56789999*************9987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0003
                 STT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH CS
      FliD_C 186 kssngtlqtasknltkqikdldkkiedldkrletleerlkkqfaalekavskl 238
                 +s++ + + + + l+ qi+++++++e+++ ++++le  +++  +++ ++ +++
  CDO70320.1 249 NSPSPASNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNM 301
                 5556677889999*********************************9998877 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.4   8.8e+03      51      67 ..     128     145 ..     122     147 .. 0.72
   2 ?   11.8   2.0    0.0002      0.24      14      50 ..     258     294 ..     254     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.4
  Snapin_Pallidin  51 e.aevlpdlkeyakKLvn 67 
                      e ++++p +   +kKL +
       CDO70320.1 128 EtEDSMPSTSDFVKKLYK 145
                      334689999999999865 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
  Snapin_Pallidin  14 kldeldeklkelrqsQeeLleqldrlnekLkeleeaq 50 
                      ++++l+++++  ++ Qee+++++++l ++++++  + 
       CDO70320.1 258 SVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEM 294
                      799***************************9876654 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   0.00045      0.54      23      53 ..     256     286 ..     254     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00045
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdLksd 53 
                 ++ ++alqa++++++ ++ee++a ++ L+ +
  CDO70320.1 256 NASVEALQAQIERMQRDQEEMAAHIRSLETN 286
                 67899*********************99654 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.2   2.6e+03      66      87 ..     127     148 ..     107     154 .. 0.53
   2 ?   11.3   0.9   0.00024      0.29      63     129 ..     239     305 ..     221     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  66 rekqkskkdndnvikksskele 87 
                 +e++ s + ++  +kk+ k+le
  CDO70320.1 127 HETEDSMPSTSDFVKKLYKMLE 148
                 2233333334667777777777 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  63 dslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqke 129
                    +++ +s++  + + + s + l+ +i+r+++   +   +ir L +++++  +++ + + +++q+ 
  CDO70320.1 239 AARKSTGRSANSPSPASNASVEALQAQIERMQRDQEEMAAHIRSLETNYQNVLSEMVNFQRNMAQQD 305
                 344444444444488999999*************99999*********************9999985 PP

>> CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.5     0.011        13     115     159 ..     107     152 ..      97     296 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
  CPSF73-100_C 115 pasvkrsskkhshshkekleeknshaklskeerlerllllLeaq.F 159
                      +++ss++h+hs +++ +++++++  s ++++++l  +Le+  F
    CDO70320.1 107 RDMARESSHDHHHSSSNSVKHETEDSMPSTSDFVKKLYKMLEDTsF 152
                   3344578888888889999999999999*************98525 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2154  (0.120141); expected 358.6 (0.02)
Passed bias filter:                      990  (0.0552178); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 2246.02
//
Query:       CDO70321.1  [L=213]
Description: hypothetical protein BN946_scf184843.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1520.45
//
Query:       CDO70322.1  [L=453]
Description: hypothetical protein BN946_scf184843.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-22   78.9   0.0    4.8e-22   78.3   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   2.7e-26   4.8e-22      10     226 ..     178     437 ..     170     443 .. 0.74

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.7e-26
  Pkinase_fungal  10 d.ekveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsse.ridirk.dpekfirvv 101
                     +  ++++++  w +  +v+e k++ ++ k ++ + qL+ y+r ++ +q++RrF + ++l ++++ +w+ DRsGvl+ + +i+i++ +p  fi+v+
      CDO70322.1 178 SvLNAKKETLWWLQLVAVVEAKRDFDQ-KDEDLIIQLLGYLRLMMVEQKDRRFTLSVFLSSTQVSVWLQDRSGVLGMDvPINIHQvHPMDFIHVI 271
                     444567888899************998.88999******************************************98648***98469******* PP

  Pkinase_fungal 102 lglllmdddeLGlDptiv.............tesdgrrsyei.............kaeeeketekleleeplarqraivgRgTtcwrarkeger. 169
                     + l+++   +LG++p+++               s+g +++ +              + e++   +l   +pl++ + + g g ++w + +  +r 
      CDO70322.1 272 ATLAILPAHRLGFNPSMKlareplppihtyhFLSEGPDKFNVemykksnyamqwvITVEKEVFITLRAMSPLCT-DVVSGSGSIVWAVIRYVDRq 365
                     *****************999999999998873355555555566744444443321222222233333355554.4599*******975544444 PP

  Pkinase_fungal 170 .....gkeyvvKdsWrdaerksEael...Lkkaeergvegvarlvah....edve..ekdddi.aeiRkgld 226
                             yv+K  W+++++  E+ +   L +++  + +  a++v++    e+v+  +++d++   iR+gl+
      CDO70322.1 366 kdpdmCAVYVLKQLWKSDGQADEGAIyeyLCQMRATSSNPGAKYVGEmecrEVVKieGAVDSTeGLIRRGLE 437
                     88888668***************9761115555544444445555541111555588888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3463.30
//
Query:       CDO70323.1  [L=1765]
Description: hypothetical protein BN946_scf184843.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-29  101.1   0.0    9.6e-29  100.5   0.0    1.3  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    1.1e-10   41.3   0.0    2.6e-10   40.2   0.0    1.7  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    4.8e-07   30.0   0.0    1.5e-06   28.5   0.0    1.8  2  RNase_H          RNase H
  ------ inclusion threshold ------
      0.018   14.6   0.3       0.08   12.5   0.3    2.2  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   2.1e-32   9.6e-29       1     222 []    1073    1336 ..    1073    1336 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 2.1e-32
                  EE-TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB- CS
       RVT_1    1 ipKkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvple 86  
                  ipK+        +syRpi lls+++k+l+k++++rL   +    +l++nq+g  + +st+da     ++++a ++++  + +l +D+ ++F s +++
  CDO70323.1 1073 IPKPYkddytrIKSYRPIVLLSTLGKLLEKVLSERLHYECqrYGILHPNQFGGTKAHSTIDAAtalVTHVHAGWQRRMVTSCLAFDVAQFFPSMNHD 1169
                  566666678889*************************9999999*******************99967777779*********************** PP

                  GGGGGGG-EEET..........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T.........TEEECTTEEEEEESSHHH CS
       RVT_1   87 ellrkltafkvptklinliksflstrsfsvrv.ngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra...kgvtllrYaDDililskskee 179 
                   l+r l+++++ ++lin ++s+l +r  ++r  + +++ +   + g  qGs+lSP+l n++++++l+ l       +   l  Y+DD + ++++++ 
  CDO70323.1 1170 LLCRILERYGFAPRLINFFRSYLGGRVSCFRWgRASSPWFDLPAVGAGQGSALSPVLTNIYLSPALHILFPLGsrpSMSALQFYVDDGVWIVTTPSV 1266
                  ***************************9**9966779999999********************98876554334549999*********99999888 PP

                  ......HHHHHHHHHHHHHHTT--BEGGG-EEE..........................ESSEEETTEEE CS
       RVT_1  180 ......lqelleaveewlkesglkinpeKtklvlft....................v.kseevkyLGvtl 222 
                        l +l+++++++l++ gl i+ eK +l++f                        ++ ++yLG++l
  CDO70323.1 1267 dencrvLIALYRHTVDTLARLGLVIEVEKNELIHFIstrlardnaplaltlddgttIqPTQCWRYLGFRL 1336
                  89*********************************9****************998736*********985 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   5.7e-14   2.6e-10       2     118 ..     671     789 ..     670     790 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 5.7e-14
  Exo_endo_phos_2   2 liisvYippsdelenlestlekllselkspkiiilGDfNakhplWgsedtds.sargeeLiefleehslsllnllksgptfkssng...sstiD 91 
                       i++vY+  ++    + + l ++  +l+s   i++GD N + p W+ +   + + r  eL+++  + +l+ll+++  +pt+ ++++   +++iD
       CDO70323.1 671 AILNVYNDVQN---SAVRYLLDVAPRLPS-LDIVGGDYNTHAPIWDPTYPADsRTRVGELLDLHAQLGLRLLSPPG-VPTHYPHRAglrETVID 759
                      68999999999...777888888888886.78***************76666799***************888866.7888888888999**** PP

  Exo_endo_phos_2  92 ltltsdnlals...kleleeedlgSDHrpi 118
                      l+++ d+  ++        ee  +SDH +i
       CDO70323.1 760 LVWVPDDREHNlyqIRVAPEERGLSDHAVI 789
                      ****877777777767778899*****987 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.2     1e+04      93     122 ..     375     401 ..     368     406 .. 0.78
   2 !   28.5   0.0   3.3e-10   1.5e-06       3     136 ..    1567    1696 ..    1565    1700 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
                 TTSSBHTTHHHHHHHHHCHCSSEEEEEE-S CS
     RNase_H  93 seqkpvknkdlaellkelakkkkvqlkwvk 122
                 ++ +p++n+d++ ++   a + + +++w++
  CDO70323.1 375 DAATPIFNNDIWREI---ALRPSTSFRWIP 401
                 556699******999...666778888886 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.3e-10
                  SEEEEEEEEEECTTTCE....EEEEEECTT..E..EEEEEECCCCHHHHHHHHHHHHHHH..TT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSS CS
     RNase_H    3 avvvYtDGsclgnpgeg....gagavlykegar..nisapleeaqtnnraELsAvieaLk..alksdekvniytDSkYvvkgitqwvhrwkknawkt 91  
                  ++v++tDGs+   +++g     ag+ +y++g r     a +++++ +   EL+A+ +a+    lks ++v+++ D + ++k++++        ++ t
  CDO70323.1 1567 SLVLFTDGSAVYSERHGrqgrAAGYRAYHGG-RllRAHAVYTGFTLAYDCELMALSMAVGfaYLKSYHTVHLFADNESALKSLLD-----TSTGRGT 1657
                  689******9999666633334556555553.44566677779****************98557999*********999998887.....2346666 PP

                  ETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHH CS
     RNase_H   92 tseqkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDr 136 
                  t +   +   d +e++    +++++ l++++ H+G+  +Ne++D 
  CDO70323.1 1658 TINTCRILR-DWFERN----ERNHLILHYCPSHSGI-DENEAVDA 1696
                  766655666.666666....8899************.7*****96 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.8e-05      0.08      25     176 ..     590     727 ..     524     786 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                    HHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  25 lltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlniashrd 120
                     ++a + Dv+++QE+++++l  ip ++             tg++  ++n + +  +  +                                  + +
     CDO70323.1 590 RCAAGNVDVVCIQELWYGPLRPIPSASP------------TGPAERTDNNMLYGTQLHPAWT------------------------------LVEN 643
                    3344456*************99998884............3445555666655555555333..............................2233 PP

                    GHHHHHHHHHHHHHHHHHHHHHTTSEEEE............................EEE-SSSTSGGGBSCGHHHHHHCTTTH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 121 hdlvrdlqllalllqvealnadrgapviv............................aGDfNarpsdddsrvlrtrglalapap 176
                     +++r   +   +l+++  ++d+++p+ +                             GD N++   +d   +++ + +  + +
     CDO70323.1 644 RKDARVVCHVNRKLANAVISLDSTDPIAIlnvyndvqnsavrylldvaprlpsldivGGDYNTHAPIWDPTYPADSRTRVGELL 727
                    344444444445555555555666666556666666666666666777777777776999999666666666555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 11000.39
//
Query:       CDO70324.1  [L=883]
Description: hypothetical protein BN946_scf184843.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-46  157.7   0.0    8.4e-46  156.5   0.0    1.6  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   4.7e-50   8.4e-46       3     400 ..     124     681 ..     122     690 .. 0.79

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 4.7e-50
  Pkinase_fungal   3 dlvlvskd.ekveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvls.seridirkdpe 95 
                     d v+ +++ ++++++k  w +  +v+e ++++++ +  k +l+L+ ++r+v+++q++RrFv+g++l   ++ +w++DRsGvl+ s +++++++p+
      CDO70324.1 124 DAVFEDASlSAEQKEKLWWLQFVAVVEARSTPNQ-NEVKLVLKLVDCLRSVMIEQKDRRFVLGILLSAAQASVWLHDRSGVLGmSVPVNVHENPK 217
                     667777767778899999*************998.7778999***************************************964889******** PP

  Pkinase_fungal  96 kfirvvlglllmdddeLGlDptiv.............tesdgrrsyei....................kaeeeketeklele.eplarqraivgR 156
                      f++++++++++   +LG+Dp +                                                ++k+   ++l    l+r++  +g 
      CDO70324.1 218 DFVHIIAAMSVLPAHRLGFDPDMRlarepsppihmyrL---------SstgpdkfdielyrkshyvtqWVIDTKSGAFITLSaISLIRTNVAIGS 303
                     **********************9866666666666552.........0444444444778888887764456677788889988899999999** PP

  Pkinase_fungal 157 gTtcwrarkeger......gkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahedveekdddiaeiRkgldvtkaekfrskrkvvsssss 245
                     g ++w + +  +r      ++ +v+K  W++++   E+ + ++        +a   ++ d +       e+R+ ++++ +  ++++++++++  +
      CDO70324.1 304 GCMVWAVIRYVDRhqdpsrREVFVLKQQWKSKGHLDEGAIYEEL-----DAIASASGDPDAQ--YLGQLELREIVEIEGE--VDNTATLIQRGLK 389
                     *****97554444488988789****************998888.....4455555555543..3333555555555544..4455444444444 PP

  Pkinase_fungal 246 qelsskaevklkksess......kkvekrsvdssvstskrsrlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiS 334
                      +++++++ +  +   +      ++ +   v s  +  + + l+ r+ +r+v++++G +i+ +++  ell+++ +a++ghr  +   g++H D+S
      CDO70324.1 390 DASQPQKRLPAFNAMPElcvnfvDDDRRGMVASYAPGWNAKVLRRRTRTRVVLKTFGCSIKFFTTLPELLTCFLHAVRGHRFAY-VNGYVHGDVS 483
                     333333333222211110000001111112222224444444889***************************************.9********* PP

  Pkinase_fungal 335 enNilitdskke.......gerkglLiDLDlakelsddssesgare................................................. 373
                     ++N+lit  +++       ++ +g LiD+D+ake+  +s ++++ e                                                 
      CDO70324.1 484 TGNLLITTVRQDdsiehrfQDIRGCLIDFDHAKEVRPVSLRKAKLEpfdvsttsdmirthhpevveriteevmeracqlvnfrepeqnvftrarn 578
                     *******775556888899*****************9888876644677788889999999********************************** PP

  Pkinase_fungal 374 ..........................................................rtGTleFmaievlk..........geeHsyr...... 394
                                                                               rtGT+++ + ++l+             H+++      
      CDO70324.1 579 lssyieaalqyheisgrmpppnkvftpehlgwnadlllpptvdiprdrfrdgprlgapRTGTPPYASAKILNeepvevgrwrR--HTFLrpsivv 671
                     ************************************************************************66666544440..5554555555 PP

  Pkinase_fungal 395 ....hDLESf 400
                         hD+ES+
      CDO70324.1 672 hdaiHDMESL 681
                     5555****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 5538.08
//
Query:       CDO70325.1  [L=409]
Description: hypothetical protein BN946_scf184843.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-06   26.0   1.2      0.014   15.8   0.0    2.4  2  zf-C2H2      Zinc finger, C2H2 type
    6.8e-05   23.4   1.4       0.09   13.7   0.0    2.4  2  zf-C2H2_4    C2H2-type zinc finger
     0.0096   16.2   0.8      0.096   13.0   0.3    2.3  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
        0.1   12.9   1.8       0.57   10.5   1.9    1.9  1  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
       0.23   11.8   1.4        3.3    8.1   1.3    2.0  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2   0.00067       2.4       3      23 .]      14      35 ..      14      35 .. 0.95
   2 !   15.8   0.0   3.9e-06     0.014       1      23 []      36      59 ..      36      59 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00067
                ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  3 CpdCgksFkrksnLkrHirt.H 23
                C +C + F +   L++H++  H
  CDO70325.1 14 CWYCEREFEDEKVLMQHQKAkH 35
                99****************9877 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.9e-06
                EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                +kC+ C+++ ++   L +Hi+  H
  CDO70325.1 36 FKCNMCPRRLNTAGGLAVHIQQvH 59
                8*******************9888 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.3     0.001       3.6       5      24 .]      16      35 ..      12      35 .. 0.92
   2 !   13.7   0.0   2.5e-05      0.09       1      24 []      36      59 ..      36      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
   zf-C2H2_4  5 iCgksFsskkaLlrHlkthH 24
                +C + F + k L +H k+ H
  CDO70325.1 16 YCEREFEDEKVLMQHQKAKH 35
                8*****************99 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.5e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkthH 24
                fkC  C+++ ++  +L  H++++H
  CDO70325.1 36 FKCNMCPRRLNTAGGLAVHIQQVH 59
                8*********************99 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   2.7e-05     0.096       3      22 ..      13      32 ..      11      32 .. 0.92
   2 ?    1.0   0.0      0.15   5.6e+02       2      21 ..      36      55 ..      35      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                 BBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz  3 YCvlCdKyFksenaldnHlk 22
                 +C +C++ F++e++l +H+k
   CDO70325.1 13 WCWYCEREFEDEKVLMQHQK 32
                 6889**************97 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
                 CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHl 21
                 f C  C +  +++  l  H+
   CDO70325.1 36 FKCNMCPRRLNTAGGLAVHI 55
                 99******999987777776 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   0.00016      0.57       5      51 ..      14      57 ..      12      60 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
     zf-Di19  5 CPyCgkel.tvkeLveHvedeHrveskevvCPvCaekvtk..dlvaHltl 51
                C yC++e+ ++k L++H +++H +      C +C  +++    l+ H++ 
  CDO70325.1 14 CWYCEREFeDEKVLMQHQKAKHFK------CNMCPRRLNTagGLAVHIQQ 57
                99****86267889***9999974......77776554432366666665 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.3   0.00093       3.3      52      77 ..      13      37 ..       2      40 .. 0.77
   2 ?    2.7   0.0     0.045   1.6e+02       2      27 ..      38      63 ..      37      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00093
   zf-C2H2_2 52 eClyCekefkslealreHmkkkgHck 77
                 C yCe+ef++ + l++H k  +H k
  CDO70325.1 13 WCWYCEREFEDEKVLMQHQKA-KHFK 37
                6*****************665.5665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.045
   zf-C2H2_2  2 Clfcekkskeveellehmskkhgffi 27
                C +c+++ +++  l+ h+++ h++  
  CDO70325.1 38 CNMCPRRLNTAGGLAVHIQQVHKLEP 63
                999****999************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2685.40
//
Query:       CDO70326.1  [L=412]
Description: hypothetical protein BN946_scf184843.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-06   29.2  10.1    1.5e-06   29.0   5.2    2.6  3  Abhydrolase_6    Alpha/beta hydrolase family
    0.00069   19.3   0.0    0.00093   18.9   0.0    1.3  1  Abhydrolase_1    alpha/beta hydrolase fold
     0.0013   18.7   0.4     0.0046   16.8   0.1    1.9  2  Ser_hydrolase    Serine hydrolase
  ------ inclusion threshold ------
      0.021   14.3   0.0      0.045   13.3   0.0    1.5  2  DUF900           Alpha/beta hydrolase of unknown function (DU
       0.22   10.4   0.1       0.48    9.3   0.0    1.5  2  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.26   9.4e+02     105     162 ..      37     104 ..      12     179 .. 0.40
   2 !   29.0   5.2   4.3e-10   1.5e-06       1     124 [.     197     329 ..     197     370 .. 0.63
   3 ?    2.7   0.0     0.047   1.7e+02     163     203 ..     330     371 ..     308     393 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.26
                    S----TTHHHHHHTT-C....CCCHCCH.......S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTT CS
  Abhydrolase_6 105 laaalelllallallrl....lawlsre.......plprlfladedadaawrarlarlaallaglgllp 162
                    ++++++++l+l+a++ +    + +l r          p ++ + e+ +a ++  + r+++ +++ g++ 
     CDO70326.1  37 GRFLFRWWLGLYAVAEAafylFVFLPRSkllqkaaTHP-PLPSREEREALFQKCFERVSDGQKAYGWFF 104
                    33444444444442222111112221112222211111.222222223333334444443333322221 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 4.3e-10
                    EEEE--GC.....G.CHHHHHHHHCCT....CEEEEE--TTST.S-GGCS--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaag....vhvlapDlpGhG.rsdpppldled.ladlaalldelaagggpvvlvGHSlGGalalaaapla... 86 
                    +l++HG g   + W +v+++  ll a+    +  +a+   +   r ++ppl+ ++ l++l++lld+ +    +vv+ +HS+G+++a++    +   
     CDO70326.1 197 ILFIHGIGI--GLWpYVPFFGDLLEADpdvgI--IAIENLSISmRISRPPLSRTEmLEALVELLDAHD--IERVVVAAHSYGTVIAAH---MLrdp 283
                    89***9776..567434455444444445264..7777775521247777777665777799999995..******************...44444 PP

                    ......EE.EEES-....----TTTS----TTHHHHHHTT-C.CCC CS
  Abhydrolase_6  87 ....lvvg.vlldppp..talpagllaaalelllallallrl.law 124
                        +v++ +l+dp p  + lp    +++ + +++++ +  +   w
     CDO70326.1 284 qlcaRVSAwLLVDPVPflLHLPSVAYNFVYRAPRTANEWQLSnILW 329
                    888666669*****55444444444444444444444433333344 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.047
                    CCHHTT-TTGCEEECTT-C.HHHHCHHCCCH.STTEEETCE.. CS
  Abhydrolase_6 163 aaawadlpvpllvlggeDp.lvprllerlla.qagarlpvvlp 203
                     +++a+  v++ vl+g+D+ + ++ ++r+l+  ++a+++ v++
     CDO70326.1 330 KEDLAGKKVAV-VLCGRDQiVDAAEVRRYLTgEDDADVEFVWK 371
                    45777777777.77*****655577999999988888874443 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.6e-07   0.00093       2     119 ..     196     310 ..     195     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.6e-07
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.. CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.. 94 
                    +++++hG++ +++ +   ++++ L+ d +  +i++   +   S + ++++    +t  + + l  +lda++++++++ +hS+G+ ia++++ +   
     CDO70326.1 196 PILFIHGIGIGLWPYVP-FFGDLLEADpDVGIIAIE--NLSISMRISRPPL--SRTE-MLEALVELLDAHDIERVVVAAHSYGTVIAAHMLRDPql 285
                    67788888777775444.555555554544445444..3344444444321..2453.77888899*************************99766 PP

                    GGGEEEEEEESECSSCCHHHHHHHH CS
  Abhydrolase_1  95 perVkalvllgaidpaaslieaqrq 119
                      rV+a  l+++++   +l + +++
     CDO70326.1 286 CARVSAWLLVDPVPFLLHLPSVAYN 310
                    6677777777774444444444444 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.32   1.2e+03      39      54 ..     133     148 ..     126     151 .. 0.85
   2 !   16.8   0.1   1.3e-06    0.0046      55      90 ..     262     298 ..     237     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
                    HHHHHHHHHHHHHC-S CS
  Ser_hydrolase  39 ledWvaaleaaveaae 54 
                     ++W+++l+++v+++e
     CDO70326.1 133 KDEWADELQTYVQKME 148
                    689********99876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.3e-06
                    TTEEEEEETCHHHHHHHHHH.HTTSSSEEEEEEET-- CS
  Ser_hydrolase  55 ekvvlvAHSlgclavlhaae.lqlakkvagalLVapa 90 
                    e+vv+ AHS g ++++h+++ +ql ++v + lLV p 
     CDO70326.1 262 ERVVVAAHSYGTVIAAHMLRdPQLCARVSAWLLVDPV 298
                    568999****************************986 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.4   8.6e+03      16      27 ..     191     202 ..     188     203 .. 0.83
   2 ?   13.3   0.0   1.3e-05     0.045      76     114 ..     244     282 ..     238     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.4
      DUF900  16 saakeilvfvhG 27 
                 sa+k+ ++f+hG
  CDO70326.1 191 SATKDPILFIHG 202
                 6788999****9 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.3e-05
      DUF900  76 srdalekllrylatkksakkihllaHSmGtwlvlealrq 114
                 sr+++ ++l +l  +++ +++ + aHS Gt +++++lr 
  CDO70326.1 244 SRTEMLEALVELLDAHDIERVVVAAHSYGTVIAAHMLRD 282
                 7888888889999999*********************95 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.99   3.6e+03       8      28 ..     185     205 ..     182     218 .. 0.78
   2 ?    9.3   0.0   0.00013      0.48      87     129 ..     259     300 ..     245     340 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.99
  Chlorophyllase2   8 vvaPteageYpvllflhGyll 28 
                      v  P+++ +   +lf+hG+ +
       CDO70326.1 185 VSLPHRSATKDPILFIHGIGI 205
                      66777777777799***9876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00013
  Chlorophyllase2  87 pdlsklalsgHSrGgktafalalgkaktslkfsaligvdPvag 129
                       d++++++++HS G+ +a+++  + +     +sa + vdPv +
       CDO70326.1 259 HDIERVVVAAHSYGTVIAAHMLRDPQL-CARVSAWLLVDPVPF 300
                      5899**********9999888666555.789*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2794.76
//
Query:       CDO70327.1  [L=120]
Description: hypothetical protein BN946_scf184843.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.002   18.0   0.0        1.1    9.2   0.0    2.1  2  NAD_binding_10  NAD(P)H-binding
     0.0084   15.6   0.0       0.01   15.3   0.0    1.2  1  adh_short       short chain dehydrogenase
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.036   13.7   0.0    1.6  2  ApbA            Ketopantoate reductase PanE/ApbA
      0.082   12.3   0.1      0.096   12.1   0.1    1.1  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00024       1.1       1      53 [.       7      64 ..       7      68 .. 0.83
   2 !    7.3   0.0   0.00089         4     154     179 ..      78     102 ..      67     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00024
                    TTTSHHHHHHHHHHHHC-T-EEEEEETT......HHHCHHHHCTTTCEEEE--TT-CCH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRn......peklaeleaeeglevvegdvtdved 53
                    G++ ++G +++ +ll++g  +vt l R+       e+++++ ++ ++++v gd ++ +d
      CDO70327.1  7 GGSKNIGYYAALRLLEQG-NTVTFLLRRttvfdyDEQMQHYLKKGQATLVAGDGLNLAD 64
                    89999************6.8999999995666666788887789999999999888776 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00089
                     EEEEETTSS----EEEHHHHHHHHHH CS
  NAD_binding_10 154 yrvvekgepfkggsisradVAdvlva 179
                     yr+v+ ge  +g+++sr+d A+++v+
      CDO70327.1  78 YRAVA-GEIEGGYTVSRRDTAHFIVN 102
                     55554.4555789***********97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-06      0.01       2      35 ..       2      35 ..       1      66 [. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrsee 35
                +++v G+s+ IG+  a +l+++G +v+++ r+  
  CDO70327.1  2 HAFVLGGSKNIGYYAALRLLEQGNTVTFLLRRTT 35
                689***********************99776643 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.9e-06     0.036       5      32 ..       8      35 ..       4      54 .. 0.85
   2 ?   -1.2   0.0      0.32   1.4e+03      87     108 ..      42      63 ..      34      72 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.9e-06
                S-SHHHHHHHHHHHHHTHCEEEE-SCHH CS
        ApbA  5 GaGaiGsllaakLakagadvtlilrsrr 32
                G+  iG + a +L ++g++vt++lr+  
  CDO70327.1  8 GSKNIGYYAALRLLEQGNTVTFLLRRTT 35
                6668*********************974 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.32
                 HHGGGECTCEEEEEESSSSCHH CS
        ApbA  87 eikplldpntvvlllqNGlghe 108
                 +++++l++ +++l+   Gl+ +
  CDO70327.1  42 QMQHYLKKGQATLVAGDGLNLA 63 
                 5677777777777777776655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.1e-05     0.096       2      60 ..       5      58 ..       4      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TT.HHHHHCTTT...TTGCCEEEEE-- CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfnt.griehlakdpkeeleenlklhkgD 60
                   + G++  iG y a +Lle+g +v+ + rr++ f+  ++++h  k      +++ +l+ gD
     CDO70327.1  5 VLGGSKNIGYYAALRLLEQGNTVTFLLRRTTVFDYdEQMQHYLK------KGQATLVAGD 58
                   6678888************************9976256666554......3456777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 827.05
//
Query:       CDO70328.1  [L=82]
Description: hypothetical protein BN946_scf184843.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-22   77.4   0.2    4.5e-22   77.4   0.2    1.7  2  ATP-synt_J  ATP synthase j chain


Domain annotation for each model (and alignments):
>> ATP-synt_J  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.07   1.2e+03       1       5 [.       8      12 ..       8      14 .. 0.89
   2 !   77.4   0.2   2.5e-26   4.5e-22       5      51 .]      32      78 ..      30      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.07
                ----- CS
  ATP-synt_J  1 kfptp 5 
                k+ptp
  CDO70328.1  8 KWPTP 12
                9***9 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 2.5e-26
                -SSSSSHHHHHHHHHHHHHHHHHHHHSTTSSSSSS-TTSTTTTSS-- CS
  ATP-synt_J  5 pvlkpmwPFfaaglivlygvnkaqnammnsdEfknDPRNPraakgkk 51
                +vlkpmwPF++a++ ++y+v+kaq++ ++s+ ++nDPRNP+aa+ +k
  CDO70328.1 32 QVLKPMWPFIVASGLTFYLVSKAQDMGVKSEAYRNDPRNPYAAQIAK 78
                79*****************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 550.80
//
Query:       CDO70329.1  [L=1049]
Description: hypothetical protein BN946_scf184843.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-17   61.6   0.0    7.5e-12   45.3   0.4    2.9  3  Clathrin      Region in Clathrin and VPS
    3.8e-09   36.6   0.2      7e-09   35.8   0.2    1.5  1  VPS11_C       Vacuolar protein sorting protein 11 C terminal
    1.7e-08   34.3   8.0    2.8e-08   33.6   8.0    1.4  1  zf-C3H2C3     Zinc-finger
      0.003   17.4   8.4     0.0051   16.6   8.4    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.019   15.3   7.4      0.035   14.4   7.4    1.5  1  zf-RING_2     Ring finger domain
       0.06   13.0   0.2        0.2   11.4   0.2    1.9  1  TPR_11        TPR repeat
        0.3   11.1   1.0        3.3    7.8   2.2    2.1  2  ADK_lid       Adenylate kinase, active site lid
       0.62   10.1   7.3        1.1    9.3   7.3    1.4  1  zf-RING_5     zinc-RING finger domain
        1.4    9.0   7.0        2.8    8.1   7.0    1.5  1  zf-RING_UBOX  RING-type zinc-finger
        2.2    9.0   8.9         12    6.7   0.0    3.5  3  TPR_16        Tetratricopeptide repeat
        2.3    8.5   4.2        5.5    7.4   0.2    3.3  3  TPR_2         Tetratricopeptide repeat
        2.9    8.2   7.6        5.6    7.3   7.6    1.4  1  zf-rbx1       RING-H2 zinc finger domain


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.4   5.1e-15   7.5e-12      10     131 ..     441     574 ..     432     588 .. 0.88
   2 !   12.5   0.0   6.6e-05     0.098      38     137 ..     748     861 ..     743     866 .. 0.88
   3 ?   -3.0   0.0       4.1   6.2e+03      23      55 ..     903     934 ..     889     942 .. 0.72

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 5.1e-15
                 CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTS......S---.......S-TTHHHHHHHT-SSHHHHHHHHHT CS
    Clathrin  10 lsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflk......knnn.......ydlekvaklcekadlyeeavilykk 95 
                  s v++ f +a++++ l  yL+++ + +  +n++  t+ll +y k +d+ +l++f+k      ++         +dl++++++c++a+++e a +l kk
  CDO70329.1 441 PSYVIRKFLDAQRIHNLVTYLQELHSLG-LANSDHTTLLLNTYTKLKDVARLDSFIKreslrtSS-DgaeeelpFDLDTAIRVCRQAGYFEHASYLAKK 537
                 5679*********************655.577*************************99997633.2466689************************** PP

                 TXTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHH CS
    Clathrin  96 inefkkaisl.lkklkdfddaieyaakvsnpelwekl 131
                 ++++++ + + +++ ++++da+ y++++  +++ + l
  CDO70329.1 538 YERHEDYLRIqIEDAGNYRDALLYLRRLGAEAAESNL 574
                 **********************999998876665555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.6e-05
                 TS--HHHHHHHHHHHHHT.......T-HHHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSS..X.SSSSHCSCHHHHTTTTTXX. CS
    Clathrin  38 skenpalqtallelyaky.......ddpqeleeflkknnn.ydlekvaklcekadlyeeavilykkinefkkais..l.lkklkdfddaieyaakvsn. 124
                 ++++ a+ + l ely++        ++  +++++l++    yd+  ++ lc+ ++ +  +v+l+ ++++ ++++   +   +++d d  +e+++++++ 
  CDO70329.1 748 QRDQAAVWNTLFELYLTQadnsagsNP--KALAVLQNPRLpYDPTHALILCSTRGFTPGLVLLWERMGMQEDVVRffMdRYQDGDADASAEVVRRLDQy 844
                 46889999**********999998666..99******999***********************************877777777777777*****9999 PP

                 ....SHHHHHHHHHHHS CS
    Clathrin 125 ....pelwekllealld 137
                     p+l++ +l++l +
  CDO70329.1 845 gpgrPQLYPLVLRFLTS 861
                 99999999999999876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.1
                 HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHT CS
    Clathrin  23 leelleyLekvlkedskenpalqtallelyaky 55 
                   +++ +L +++k + +e+++++ +l+  y  +
  CDO70329.1 903 VGLVKDWLMARIK-SAREEVDMDQKLIASYRSD 934
                 5678889999995.4467799999999888655 PP

>> VPS11_C  Vacuolar protein sorting protein 11 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   4.7e-12     7e-09       2      45 .]     999    1040 ..     998    1040 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.7e-12
     VPS11_C    2 etirelrraQeesadrhdlFkaaLeeseDrFkvvadyFGRGvme 45  
                    ire+rr++e++ad+hdlF ++++e   +F   a  F+RG+++
  CDO70329.1  999 GIIREIRRNNERLADQHDLFLSEVRE--GGFDALASGFSRGILN 1040
                  569***********************..**************97 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   8.0   1.9e-11   2.8e-08       1      34 [.     959     994 ..     959     995 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.9e-11
   zf-C3H2C3   1 CdnCglkLdypfvaysCkHlvHakC..adeevCPkC 34 
                 C  C + Ld p v++ C+H++H+ C   +e+ CP C
  CDO70329.1 959 CSACQGGLDLPAVHFMCNHSYHQRClpQNETECPNC 994
                 999**********************9778899**** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   8.4   3.4e-06    0.0051       1      40 []     958     994 ..     958     994 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 +C  C+  l  p v + C+H+++q C+ +    + eCP C
  CDO70329.1 958 QCSACQGGLDLPAVHFMCNHSYHQRCLPQN---ETECPNC 994
                 7**************************995...88****9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   7.4   2.4e-05     0.035       2      43 ..     958     994 ..     957     995 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlC 43 
                 +C+ C+  l+    v+ + C+H++h+ Cl +   ++ +CP+C
  CDO70329.1 958 QCSACQGGLDL-PAVHFM-CNHSYHQRCLPQ---NETECPNC 994
                 8****999964.778888.*********977...5555**** PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013       0.2       1      19 [.     416     434 ..     416     436 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
      TPR_11   1 GdayyeqGkyeeAieaYkk 19 
                 Gd +y++G+y++A+++Y +
  CDO70329.1 416 GDHLYAKGDYDNAMQQYIQ 434
                 899**************77 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   2.9e+03      23      35 ..     115     127 ..     113     127 .. 0.86
   2 ?    7.8   2.2    0.0022       3.3       3      27 ..     971     994 ..     970     999 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
                 B-TTT--.-B--G CS
     ADK_lid  23 lCDkCGepLvqRs 35 
                 ++ k+G pL  Rs
  CDO70329.1 115 FDKKTGAPLLLRS 127
                 699******9886 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0022
                 E-TTT--EEETTTB--SSTTB-TTT CS
     ADK_lid   3 vCpkCGrsYhvvfnpPkveglCDkC 27 
                 v+  C+ sYh +   P++e  C +C
  CDO70329.1 971 VHFMCNHSYH-QRCLPQNETECPNC 994
                 6778******.7789*********9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.3   0.00073       1.1       2      43 ..     959     995 ..     958     996 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00073
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C+ C   l  + +++   C H+++++Cl ++     +Cp C 
  CDO70329.1 959 CSACQGGL--DLPAVHFMCNHSYHQRCLPQNE---TECPNCA 995
                 99999999..9999999***************...****996 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.0    0.0019       2.8       1      36 [.     959     989 ..     959     998 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0019
  zf-RING_UBOX   1 CpIClelftdP...lvlpCGHtFCreClwelskslegaf 36 
                   C+ C+  ++ P       C H+++++Cl       +++ 
    CDO70329.1 959 CSACQGGLDLPavhF--MCNHSYHQRCL------PQNET 989
                   999******995331..3**********......33333 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0078        12       8      56 ..     386     432 ..     381     438 .. 0.77
   2 ?    3.7   2.6     0.065        97       9      42 ..     551     581 ..     550     584 .. 0.87
   3 ?   -0.7   0.1       1.6   2.4e+03       6      23 ..     824     841 ..     821     852 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0078
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.al 56 
                 +r g y+ A++ + ++ k+d  +   a+ +  +gd ++++g+++ A  ++
  CDO70329.1 386 YRKGLYTLALNIA-ETQKLD--DAHIADIHKQYGDHLYAKGDYDNAMqQY 432
                 5666677777666.666666..5678999999**************9555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.065
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgd 42 
                 +ag+y+dA+ +l+++ + +    +   A+++++ 
  CDO70329.1 551 DAGNYRDALLYLRRLGAEA---AESNLARYGRAM 581
                 79*******9998888888...999999999986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
      TPR_16   6 aalragdyddAaaaleaa 23 
                 ++++ gd d+ a++ +++
  CDO70329.1 824 DRYQDGDADASAEVVRRL 841
                 567777777777777554 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.5   1.4e+04       3      20 ..     389     406 ..     388     407 .. 0.81
   2 ?    7.4   0.2    0.0037       5.5       1      24 [.     409     432 ..     409     435 .. 0.91
   3 ?    0.4   0.1      0.61   9.2e+02      14      26 ..     552     564 ..     550     567 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.5
       TPR_2   3 alynlGlayyklgdyeeA 20 
                 +ly l+l  ++ +++++A
  CDO70329.1 389 GLYTLALNIAETQKLDDA 406
                 689999998889999888 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0037
       TPR_2   1 aealynlGlayyklgdyeeAleaf 24 
                 a+++ + G+ +y++gdy+ A + +
  CDO70329.1 409 ADIHKQYGDHLYAKGDYDNAMQQY 432
                 678999**************9877 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.61
       TPR_2  14 lgdyeeAleafek 26 
                 +g+y +Al ++++
  CDO70329.1 552 AGNYRDALLYLRR 564
                 79*******9997 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.6    0.0037       5.6      13      54 ..     958     994 ..     952     995 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0037
     zf-rbx1  13 acieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlc 54 
                 +c  c+   d   p v   C+H++H+ C+ +   ++++CP c
  CDO70329.1 958 QCSACQGGLDL--PAVHFMCNHSYHQRCLPQ---NETECPNC 994
                 67888877665..888889*********975...67779988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 6665.81
//
Query:       CDO70330.1  [L=308]
Description: hypothetical protein BN946_scf184843.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-44  152.9   0.0    1.2e-44  152.6   0.0    1.1  1  NmrA             NmrA-like family
    2.1e-17   63.6   0.0    2.9e-17   63.1   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    8.2e-05   21.7   0.0    0.00011   21.3   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    8.9e-05   22.1   0.0     0.0026   17.3   0.0    2.1  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0046   17.2   0.0     0.0096   16.2   0.0    1.5  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0058   16.9   0.0      0.014   15.7   0.0    1.6  2  TrkA_N           TrkA-N domain
     0.0089   15.9   0.0      0.015   15.2   0.0    1.3  1  KR               KR domain
  ------ inclusion threshold ------
      0.043   13.9   0.0      0.093   12.9   0.0    1.5  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
      0.048   14.1   0.0       0.11   12.9   0.0    1.6  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
      0.063   14.0   0.0       0.12   13.1   0.0    1.4  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.0   6.9e-48   1.2e-44       1     228 [.       5     244 ..       5     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 6.9e-48
                 EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG........S-HHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy........skeiedgkklvdAa 89 
                 I+v GaTG+qG+sv++ ll+  ++++vral+R+++s +a++l+e G+e+vk+dl   e l++al+g  +vf vt+fy        s e ++gk+lvdAa
  CDO70330.1   5 IAVCGATGNQGGSVAKLLLEhqDKYRVRALTRNPDSPAAQKLAELGAEVVKADLSIPEDLQQALRGCWGVFGVTNFYdtkikddpSSEERQGKNLVDAA 103
                 89*****************9989**************************************************************************** PP

                 HHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS...-TTS-EE-HHHH CS
        NmrA  90 keaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpg...npkavlldaeeD 185
                  + Gv+ f++S+l++ +++s ++     +++ K+++ +y+r+ + p+ f+y+g f+en++           + + d v++++p    ++k ++l  ++D
  CDO70330.1 104 MANGVECFVWSTLPSSHQISGGRL-VSRIYEGKHHVDDYIREKRCPAVFLYTGNFYENMIFRSHM----RYNRELDRVEFHQPVikpDTKLAMLYVQRD 197
                 *****************9998887.999***************************9999874444....444444455566553211445555678999 PP

                 HHHHHHHHHHH...HHHH.TTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 186 iGafvikilkd...prkl.kgkriklagntlsgneivelfekkigkt 228
                   a++ +++++   +++  + +++ +a+  +++ +i++  +k++gk 
  CDO70330.1 198 LSAVTKAVFDNwdsRKEElNHQYLYVANARVTPLDILASVKKVTGKD 244
                 99999999986554333359*************************97 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.6e-20   2.9e-17       1     148 [.       9     159 ..       9     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.6e-20
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHC..HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC........HHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpekl..aeleaeeglevvegdvtdvedlaealkgadaVvsalggggk........deegaknivda 84 
                     GAtG+ G  ++k ll+++ +++v+al+Rnp++   ++l ae g+evv++d++ +edl++al+g+  V+  ++  ++        +e++ kn+vda
      CDO70330.1   9 GATGNQGGSVAKLLLEHQdKYRVRALTRNPDSPaaQKL-AELGAEVVKADLSIPEDLQQALRGCWGVFGVTNFYDTkikddpssEERQGKNLVDA 102
                     9****************************986411455.579**************************99955555555556667888******* PP

                     HHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE- CS
  NAD_binding_10  85 akeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtd 148
                     a ++gv+ fv+ +   + +++ g       +l++++++ k++ ++++r++    +++  g + +
      CDO70330.1 103 AMANGVECFVWSTL-PSSHQISG------GRLVSRIYEGKHHVDDYIREKRCPAVFLYTGNFYE 159
                     ***********555.55534443......3467899*************999988888887765 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   6.4e-08   0.00011       1     122 [.       6     125 ..       6     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.4e-08
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +v G++G  G ++ k L++ +++  vr+l  + +++  ++l +++ + v+++D+   ++l++al+g   v+ +    d + k+      +   +G +n+
  CDO70330.1   6 AVCGATGNQGGSVAKLLLEHQDKYRVRALTRNPDSPAAQKLAELGAE-VVKADLSIPEDLQQALRGCWGVFGVTNFYDTKIKDDPS---SEERQG-KNL 99 
                 599******************************************99.**********************9997777766544443...445566.9** PP

   3Beta_HSD 100 leacvkagvrvlvYt...Ssaevvgp 122
                 ++a++ +gv+ +v+    Ss ++ g+
  CDO70330.1 100 VDAAMANGVECFVWStlpSSHQISGG 125
                 *************9644456666555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0026       1      61 [.       5      69 ..       5      78 .. 0.94
   2 ?    2.6   0.0     0.045        80      11      71 ..      96     153 ..      95     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl..elveldltdrsalerlfk 61
                i V GatG  G  ++k lle++  y+v +l+r++++ + ++l++l  e+v++dl  +++l+++++
  CDO70330.1  5 IAVCGATGNQGGSVAKLLLEHQdkYRVRALTRNPDSPAAQKLAELgaEVVKADLSIPEDLQQALR 69
                679******************999**********************************9999875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.045
                 HHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  11 Gsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71 
                 G++lv+a +++g+e+ +++ l+s+++ +     +lv   +  +  ++++++e+++ av++ 
  CDO70330.1  96 GKNLVDAAMANGVECFVWSTLPSSHQISGG---RLVSRIYEGKHHVDDYIREKRCPAVFLY 153
                 99*******************777765443...5777777777778888888888888765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.4e-06    0.0096       1      69 [.       5      70 ..       5      85 .. 0.87
   2 ?   -3.8   0.0       8.2   1.5e+04      82      96 ..      96     110 ..      90     111 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.4e-06
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTT CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallke 69
                     + + Ga G+ G +va+ll++h+d   ++   +r+ ++   +a+k+++  +e ++ d + +e+ L+++l++
       CDO70330.1  5 IAVCGAtGNQGGSVAKLLLEHQDK-YRVRALTRNPDS--PAAQKLAELGAEVVKADLSIPED-LQQALRG 70
                     5688******************96.6***********..55556789999999999999999.9999986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.2
                      HHHHHHHHHHHT-EE CS
  Sacchrp_dh_NADP  82 sldvlkaCietgvhy 96 
                      + ++++a++++gv +
       CDO70330.1  96 GKNLVDAAMANGVEC 110
                      556778888888765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.8e-06     0.014       1      58 [.       5      67 ..       5      71 .. 0.90
   2 ?   -3.6   0.0       7.1   1.3e+04      26      55 ..     205     234 ..     199     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.8e-06
                EEEES.-SHHHHHHHHHHHHTT...EEEEEEESSHHH..HHHHHHTTSEEEES-TTSHHHHHHT CS
      TrkA_N  1 iiiiG.lGrvGrslaeeLsegg...kdvvvidkdeer..veelreeglevvvgdatdeevLeea 58
                i+++G  G+ G s+a+ L e++   + v +  ++++   +++l+e g+evv++d + +e L++a
  CDO70330.1  5 IAVCGaTGNQGGSVAKLLLEHQdkyR-VRALTRNPDSpaAQKLAELGAEVVKADLSIPEDLQQA 67
                789**779************766855.9*******8777*****************99999987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.1
                 EEESSHHHHHHHHHTTSEEEES-TTSHHHH CS
      TrkA_N  26 vidkdeerveelreeglevvvgdatdeevL 55 
                 v d+ ++r eel  + l v ++ +t  ++L
  CDO70330.1 205 VFDNWDSRKEELNHQYLYVANARVTPLDIL 234
                 566667777777777777777777766666 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.6e-06     0.015       5      74 ..       7      70 ..       4      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.6e-06
                EETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHH CS
          KR  5 itGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdaveallee 74
                ++G++G+ G ++a+ l+e+  + ++  l+R+ + d+ ++   ++l++lgae  vv+aD+s +++++++l+ 
  CDO70330.1  7 VCGATGNQGGSVAKLLLEHQdKYRVRALTRN-P-DSPAA---QKLAELGAE--VVKADLSIPEDLQQALRG 70
                89****************9967899999**9.3.44433...467777776..5899*********99875 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.2e-05     0.093       3      66 ..       5      69 ..       4      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.2e-05
                EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHH.SSSS--S-BEBSSHHHHHH CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagel.lglgklgvavtddleevle 66
                +av+Ga+G  G +v+k++ e++d   v a+ r++ +  ++++ el +++ k ++ + +dl+++l+
  CDO70330.1  5 IAVCGATGNQGGSVAKLLLEHQDKYRVRALTRNPDSPAAQKLAELgAEVVKADLSIPEDLQQALR 69
                89****************99988888888888886666666666514455999999999998875 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.1e-05      0.11       2      53 ..       5      57 ..       4      79 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-05
                    EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT..TTTSBHHHHSGGGTTTEC CS
  Semialdhyde_dh  2 vaivGatGyvGqellrlLeehpevelvvllsssr..saGkklaeavkaleegkd 53
                    +a+ GatG+ G  +++lL eh++   v++l+++    a +klae+      ++d
      CDO70330.1  5 IAVCGATGNQGGSVAKLLLEHQDKYRVRALTRNPdsPAAQKLAELGA-EVVKAD 57
                    79******************887666666665553556777776643.344444 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.5e-05      0.12       1      47 [.       5      50 ..       5      73 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.5e-05
                     EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT CS
  DXP_reductoisom  1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefk 47
                     +++ G+TG  G +  +++ e++dk++v al+ + +  ++ ++ +e+ 
       CDO70330.1  5 IAVCGATGNQGGSVAKLLLEHQDKYRVRALTRNPDSPAAQKL-AELG 50
                     7899**************************988765544443.3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1928.68
//
Query:       CDO70331.1  [L=576]
Description: hypothetical protein BN946_scf184843.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-12   46.6   0.0      4e-05   23.8   0.0    3.5  3  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-07     0.011      11      44 ..      27      60 ..      22      78 .. 0.84
   2 ?    2.3   0.0     0.011   1.9e+02      60     104 ..     115     160 ..      93     165 .. 0.71
   3 !   23.8   0.0   2.2e-09     4e-05      20     101 ..     300     395 ..     278     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.1e-07
                S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST CS
         BTB 11 cDvtlvvgdgkefkahkavLaarSpyFkalftsk 44
                 D++l++ d+  f++h  vL  +Sp+F+++++  
  CDO70331.1 27 ADIILRTSDRIDFRVHSQVLTLASPFFETMLSLP 60
                69****************************9876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.011
                 GHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  60 epeafealLefiYtgeleit.seenleelLaaadllqiprlkkace 104
                 +++++e lL+++Y+   +   + + l+   +aa++++++   ++++
  CDO70331.1 115 DSTTLELLLRILYPLPKPQMeTVAALVPAVKAAQKYEMEWPLEILS 160
                 45699********977666544566677788999999986666655 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 2.2e-09
                 TEEEEE-HHHHHHH-HHHHHHHTST..............TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HHHHH CS
         BTB  20 gkefkahkavLaarSpyFkalftsk..............eieessvseielddvepeafealLefiYtgeleitseenleelLaaadllqiprlkk 101
                   +f+ah  vL+  Sp++k+ +t+               + +++ +  + + + +p+++++lL+ +Y +  ++ s ++ ++lL a +++q+ ++ +
  CDO70331.1 300 PASFYAHQSVLSVFSPVLKERLTDLrqatahshvpdaapPPDTHPQPLVLMFEEDPDTLAELLSLCYNDDARLWSLDETASLLVAIKKYQMSKVER 395
                 568*********************977666666655555334455558888999*******************9999999999999*****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4117.57
//
Query:       CDO70332.1  [L=312]
Description: hypothetical protein BN946_scf184843.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-05   23.5   0.0    0.00011   22.4   0.0    1.6  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   6.3e-09   0.00011      14     101 ..      39     138 ..      32     147 .. 0.74
   2 ?   -3.6   0.0      0.73   1.3e+04      81     102 ..     158     179 ..     153     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.3e-09
                 EEEETTTEEEEE-HHHHHHH-HHHHHHHTST...TTTTCCCE.....EEEET..TSGHHHHHHHHHHHHHSEEEC-..CGGGHHHHHHHH..HHHT-HH CS
         BTB  14 tlvvgdgkefkahkavLaarSpyFkalftsk...eieessvs.....eield..dvepeafealLefiYtgeleit..seenleelLaaa..dllqipr 98 
                 +++++ +  +k+h+  L  +S+++ +l  s+    +++++v+     +i+ d  +v +e+fealLe iY +   ++  s  +++++L+a   + l++p+
  CDO70332.1  39 VVRAQ-NDIYKVHRTLLDRHSKVLATLGPSTegpDESKKTVDglvvmHIP-DelEVRSEDFEALLEHIYHDAPVNNsaSFPKVASVLRASskEQLDFPA 135
                 45566.699******************99997665556666699975332.21258889**********997666578788999999998444566665 PP

                 HHH CS
         BTB  99 lkk 101
                 + +
  CDO70332.1 136 IHT 138
                 555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.73
                 GGGHHHHHHHHHHHT-HHHHHH CS
         BTB  81 eenleelLaaadllqiprlkka 102
                 +e +ee L++a   +ip++ ka
  CDO70332.1 158 SEHAEEALTLAVNHDIPSIRKA 179
                 5677778888877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2075.22
//
Query:       CDO70333.1  [L=2523]
Description: hypothetical protein BN946_scf184843.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-53  181.7   0.0    3.7e-30  105.0   0.0    2.5  2  SMC_N            RecF/RecN/SMC N terminal domain
    3.1e-30  104.9   0.1      2e-29  102.3   0.1    2.6  1  SMC_hinge        SMC proteins Flexible Hinge Domain
    4.6e-16   59.5   0.0    1.2e-10   41.7   0.0    4.0  2  AAA_15           AAA ATPase domain
    1.1e-14   55.0   3.0    2.6e-06   27.5   0.0    3.5  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    9.1e-13   48.8   0.0    9.1e-13   48.8   0.0    3.9  3  NAD_binding_1    Oxidoreductase NAD-binding domain
    5.3e-07   30.2   2.1    1.6e-06   28.6   0.1    2.7  2  Globin           Globin
    6.2e-07   29.1   0.0    1.3e-06   28.0   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.035   14.3   0.0    1.8  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.028   14.5   0.0       0.37   10.9   0.0    3.0  2  NAD_binding_6    Ferric reductase NAD binding domain
      0.082   13.3   0.0       0.22   11.9   0.0    1.7  1  FAD_binding_6    Oxidoreductase FAD-binding domain
       0.12   12.7   4.1         73    3.6   0.0    4.4  3  AAA_22           AAA domain
       0.35   11.4   0.0       0.35   11.4   0.0    5.6  5  ABC_tran         ABC transporter
        0.7    9.9  18.1        3.3    7.7   0.0    4.7  4  ApoC-I           Apolipoprotein C-I (ApoC-1)
        1.2    9.7   4.2        1.7    9.2   0.2    2.9  2  CbiG_C           Cobalamin synthesis G C-terminus
        1.7    7.2   5.5       0.32    9.7   0.0    2.6  3  Coprogen_oxidas  Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   9.6e-24   1.2e-20       2      69 ..       3      68 ..       2      78 .. 0.90
   2 !  105.0   0.0   3.1e-33   3.7e-30     103     201 ..     145    1237 ..      98    1253 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 9.6e-24
                EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihksk 69
                l r+e+ +Fksy+g++vi+pf + ft+++GpNG+GKsnl+dAi+FvLG +sa +lrs++l+dl+++ +
  CDO70333.1  3 LIRIEVCDFKSYRGHQVIGPFRN-FTSVIGPNGAGKSNLMDAISFVLGVKSA-QLRSSQLKDLVYRGR 68
                5699*****************88.************************9998.***********9833 PP

  == domain 2  score: 105.0 bits;  conditional E-value: 3.1e-33
                  EETTSEEEEEETTEEE-HHHHHHHHHCTT-STT................................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................ RF
       SMC_N  103 vkrkgeseykingkevtkkevsellesagiske................................................................ 135 
                  ++++g seyk+n++ vt++ ++  l +++i  +                                                                
  CDO70333.1  145 ISTTGASEYKLNNRVVTYSAYNAALIQHNILVKaknflvfqgdveavasqspkelsrlidqisgslelapeyekarealeratenatfnftkrrgia 241 
                  567899**************************9**************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  242 geirqykeqkteaerfealcqerdelvlrrilvrlyhiqrsleeharaikeqnqtlaglraeqrkhekaledaraeqararssvmqkekrikkaeka 338 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  339 letkrpdlvrieaqilhaqrkrekaeqeldklrqteadqksqleklqadlrtvqraanaaqeqqrraaqttlslseesleeyrrlkadasvlavder 435 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  436 qsletlsrdektaartlthlkdklddltqkrdkladdeqvqsqkkaeldakvsqlsdelkrvkqeydnqqsertrieqleketneklldiyekltqa 532 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  533 gvdqqesqretrlketlanlqrifpgvrgrvvdlckptqrkyetavsvvlgrnidaivvdeektaidcieymrnqragqatfipldtiqvkpindkf 629 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  630 rsfakgarlavdvihydpaveraihhacgnalvcdsmevaryvcyekgqevkavtlegtiihksglitggrsstqnskkwdekdvqglqrvrdnlma 726 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  727 qllelgkskprgkesqvllaeltrlesalnvarddqaswarldgiknerkhvereirqlqpdlrkaqaayddvkskidalasvinaaeddifaefcq 823 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  824 rigvanireyeerqlklvqaesearlqfdtqiarlthairfaedqlkmtqdrirtyeeiiqtetqnlqrlhgerteaqneiteaeeaittlqeelke 920 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1  921 laevldektkkveevkkttskaakaldqalkevashndeieklglersaiyrkckldeiklplisgslknvpmeeqnlrdevamdvdedeegtqqik 1017
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70333.1 1018 rvpdfgievdfeslddddrednaaetlkeideslakvnaeiehmapnlkamdrlddveaklvetekeaekarndskkareqfneikrrrcelfnkay 1114
                  ************************************************************************************************* PP

                  ........................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHH CS
                  ........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ........................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknv 176 
                                                                          +LSgGekt++alaLlfAi++++p+p+++lDe+daaLD++nv
  CDO70333.1 1115 nhiseridqvykdltkgkmaptggvayltledseepytagikyhamppmkrfrdmeQLSGGEKTIAALALLFAIHSYQPSPFFVLDEVDAALDNTNV 1211
                  ************************************************************************************************* PP

                  HHHHHHHHHHCTT.SEEEEE-SSHHH CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N  177 kkvaellkekskn.aQfivislreem 201 
                  +k+a++++++ ++ +Qfivisl++  
  CDO70333.1 1212 AKIASYIRSHASDtFQFIVISLKAVE 1237
                  ********765544********9743 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.1   1.7e-32     2e-29       2     116 ..     557     672 ..     556     673 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.7e-32
   SMC_hinge   2 kgvlGrladlievd.egyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevddelrkalry 99 
                 +gv Gr++dl++++ ++ye+Av+++lg +++a+vv+ e+ta  +ie+++ ++ag+atf+pld+i+ k+ +d+ +   +ga+ ++d++++d+++++a+ +
  CDO70333.1 557 PGVRGRVVDLCKPTqRKYETAVSVVLGRNIDAIVVDEEKTAIDCIEYMRNQRAGQATFIPLDTIQVKPINDKFRSFAKGARLAVDVIHYDPAVERAIHH 655
                 79*****************************************************************99999999988********************* PP

   SMC_hinge 100 llgdtlvvdsldeAeel 116
                 ++g+ lv+ds+++A+ +
  CDO70333.1 656 ACGNALVCDSMEVARYV 672
                 **************965 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   9.9e-14   1.2e-10       1     288 [.       1     518 [.       1     556 [. 0.68
   2 ?   -1.9   4.8       1.8   2.2e+03     202     272 ..    1034    1103 ..     988    1230 .. 0.61

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 9.9e-14
      AAA_15   1 MkIkkikikNFRslkd..veidlseeltvliGkNnsGKSsilealdlFlnnkekkn............................kkvikiekedleife 69 
                 M + +i+++ F+s++   v  ++ + +t +iG+N++GKS++++a+ + l  k+                               ++++++++ d e + 
  CDO70333.1   1 MPLIRIEVCDFKSYRGhqVIGPFRN-FTSVIGPNGAGKSNLMDAISFVLGVKSAQLrssqlkdlvyrgrrlarqqegdgggpsqQEEDDDAEGDGEREG 98 
                 77889**********8445559999.************************993333788999*********************9888999999****** PP

      AAA_15  70 niseskdikIdvef..................................................................................... 83 
                 +   +k   ++v++                                                                                     
  CDO70333.1  99 EGTANKAWVLAVYEdadkkewrfqrtllvhvscgqaehyparpihcisttgaseyklnnrvvtysaynaaliqhnilvkaknflvfqgdveavasqspk 197
                 *************************************************************************************************** PP

      AAA_15  84 .............................................................................................aekeka 89 
                                                                                                              +     
  CDO70333.1 198 elsrlidqisgslelapeyekarealeratenatfnftkrrgiageirqykeqkteaerfealcqerdelvlrrilvrlyhiqrsleeharaiK----- 291
                 **************************************************99999999999999999999999999887766555555555440..... PP

      AAA_15  90 keyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkeeelkn 188
                           e++++   l  +++++ k ++d   +    + s++ ++   kk++k l++++ +     ++ + + + + +k  ++l +  + e+  k+
  CDO70333.1 292 ----------EQNQTLAGLRAEQRKHEKALEDARAEQARARSSVMQKEKRIKKAEKALETKRPDLV-RIEAQILHAQRKREKAEQELDKLRQTEADQKS 379
                 ..........44444444444444444444444444444444444444333333333332222222.22222222222222222222222222223335 PP

      AAA_15 189 vlksaiiklllisakRnvsdedsekkssllgklkekileealqekl...............eeelteklkeiqeklkeidkklaeelk........... 261
                  l++++ +l++ +   n+ +e+      +  +l e+ lee+ + k+                 ++++ + ++++ lk++ ++l+++             
  CDO70333.1 380 QLEKLQADLRTVQRAANAAQEQQRRAAQTTLSLSEESLEEYRRLKAdasvlavderqsletLSRDEKTAARTLTHLKDKLDDLTQKRDkladdeqvqsq 478
                 555555555555555555555555555555555555555544333355555555555555533333334444444444444443333333334446666 PP

      AAA_15 262 ......kilkkkidkik..kfnykgkkneeieik.....d 288
                        ++ +  d++k  k +y ++++e ++i+     +
  CDO70333.1 479 kkaeldAKVSQLSDELKrvKQEYDNQQSERTRIEqlekeT 518
                 5533332222222222222333444444433333444441 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
      AAA_15  202 akRnvsd.edsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk..kilkkkidkik 272 
                  ++R+ +  e+ ++++++l k+  +i + a     +++  + l++++ kl e++k+ ++  +  k+  + +++ik
  CDO70333.1 1034 DDREDNAaETLKEIDESLAKVNAEIEHMAP----NLKAMDRLDDVEAKLVETEKEAEKARNdsKKAREQFNEIK 1103
                  233222224444444445555555444433....4444444444444444444444333334422222222222 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.2e-09   2.6e-06       1      26 [.      26      57 ..      26      96 .. 0.78
   2 ?    0.7   0.8      0.31   3.7e+02      76     158 ..     438     523 ..     430     552 .. 0.80
   3 !   24.4   0.0   1.9e-08   2.3e-05     101     296 ..    1071    1232 ..    1021    1232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.2e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl......d 26
                ++ +iGpNg+GKSnL+da++++ ++       
  CDO70333.1 26 FTSVIGPNGAGKSNLMDAISFVLGVksaqlrS 57
                7889******************9987654431 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.31
      AAA_21  76 lrlersqv...eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawslllll 158
                 l+   ++    +++l++++++l + + ++++ +++e v ++++ + ++ vs  s+  + v+++ d+q+++++     ++++ ++ll
  CDO70333.1 438 LETLSRDEktaARTLTHLKDKLDDLTQKRDKLADDEQVQSQKKAELDAKVSQLSDELKRVKQEYDNQQSERTRIEQLEKETNEKLL 523
                 4555555566789999999***********************************************99999877666666655555 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 1.9e-08
      AAA_21  101 dkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklvei 197 
                   ++++ + +++  ea+ +r + +  ++++ +++    + f+ka+++i++r+++ +++l ++   ++++   +a +  +++e +++ +   +  ++  
  CDO70333.1 1071 LDDVEAKLVETEKEAEKARNDSKKAREQFNEIKRRRCELFNKAYNHISERIDQVYKDLTKG---KMAPTGGVAYLTLEDSEEPYTAGIKYHAMPPMK 1164
                  5666777777888888888888888888888888888899999999999999999999888...999999999999999999999999999999988 PP

      AAA_21  198 elsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrll..alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv 292 
                  + +d+                                 +lS G k ++  all a+++  ++ +++++DE+++ L+   +++++  ++++++   Q+
  CDO70333.1 1165 RFRDM--------------------------------EQLSGGEKTIAalALLFAIHSYQPS-PFFVLDEVDAALDNTNVAKIASYIRSHASDTFQF 1228
                  88888................................589*******767999999999999.************************999999**** PP

      AAA_21  293 iltT 296 
                  i+ +
  CDO70333.1 1229 IVIS 1232
                  9976 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6       8.6     1e+04      44      79 ..     379     414 ..     332     432 .. 0.51
   2 ?   -1.4   0.9         3   3.5e+03      41      81 ..     913     950 ..     882     964 .. 0.68
   3 !   48.8   0.0   7.6e-16   9.1e-13       1     107 [.    2385    2497 ..    2385    2499 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.6
                    HHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHH CS
  NAD_binding_1  44 eeleelakklpgrlkvvavvsreeagweggkgrvqd 79 
                     +le+l++ l+   +  ++ ++++++ ++ +  +++
     CDO70333.1 379 SQLEKLQADLRTVQRAANAAQEQQRRAAQTTLSLSE 414
                    223333333333112222234444444444444444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3
                    TTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHH CS
  NAD_binding_1  41 lyreeleelakklpgrlkvvavvsreeagweggkgrvqdal 81 
                     ++eel+ela+ l+++    +v ++ +++ ++    +++al
     CDO70333.1 913 TLQEELKELAEVLDEK--TKKV-EEVKKTTSKAAKALDQAL 950
                    5789999999999984..3444.333333333444444444 PP

  == domain 3  score: 48.8 bits;  conditional E-value: 7.6e-16
                     EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT..EEEEEEE...ESSCTTTSSSEESSHHH.HHHHHHHHH CS
  NAD_binding_1    1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg..rlkvvav...vsreeagweggkgrvqd.alleellsl 88  
                     ++++G+G++P++++l+++++++ ++++v +v ++r e+ +++++++ ++++++p+  + +v++    +s +  ++ + kgr++  ++ e++l l
     CDO70333.1 2385 LLSAGVGLTPLLAMLNTLVKAEGPEREVSWVQAVRDEHVHAFKDHVAKVRAAHPErvKTTVFYSdpgESARLGRDYDVKGRLELgKVPEDVLRL 2478
                     689******************99********************************555555555777666667777788888753666788889 PP

                     SSTTEEEEEECSHHHHHHH CS
  NAD_binding_1   89 kkeethvyvCGppgMikav 107 
                     + +++ +yvCGp+g+++++
     CDO70333.1 2479 DAPDARYYVCGPEGFMADM 2497
                     9*************99875 PP

>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       1.7   2.1e+03      48      87 ..     927     963 ..     919     965 .. 0.79
   2 !   28.6   0.1   1.4e-09   1.6e-06       1     110 []    2112    2209 ..    2112    2209 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.7
                 HHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH CS
      Globin  48 edlksspkfkahakkvlaalgeavknldndealkaalkkl 87 
                 e+ k+ +++k+  +k  +al++a+k++   + ++  ++kl
  CDO70333.1 927 EKTKKVEEVKKTTSKAAKALDQALKEV---ASHNDEIEKL 963
                 4568889999999999*******9998...3666666665 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.4e-09
                  HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT- CS
      Globin    1 dkalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkv 97  
                  +++l+ a+++ ++++   +++ +++ +++a+pd++++F++             ++  ++a+++  a+  +++++++ + + + ++ +a++Ha+ + +
  CDO70333.1 2112 QRRLISATVPILAEHGLTITKLFYQQMLDAHPDLRNVFSHS-----------KQQRGHQAEALARAVYAYAAHIEDLTPILPVVERIAHKHASVH-I 2196
                  68899999999999999**********************55...........46888999999999999999999999*****************.* PP

                  -HHHHHHHHHHHH CS
      Globin   98 dpanFklfgeall 110 
                   p ++ ++g++ll
  CDO70333.1 2197 VPSQYAIVGKHLL 2209
                  ********99885 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.1e-09   1.3e-06       2      46 ..       4      48 ..       3      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
      AAA_29  2 krlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalL 46
                 r+++ +  +++gh++    +++t ++Gp+G+GKS l+DAi+++L
  CDO70333.1  4 IRIEVCDFKSYRGHQVIGPFRNFTSVIGPNGAGKSNLMDAISFVL 48
                5899*********8777777889********************99 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.9e-05     0.035      28      89 ..    1167    1219 ..    1151    1220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-05
     SbcCD_C   28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89  
                  r++++lSGGek ++a+lal++a++++  s         +++LDE  + lD++++a++ ++++
  CDO70333.1 1167 RDMEQLSGGEK-TIAALALLFAIHSYQPS--------PFFVLDEVDAALDNTNVAKIASYIR 1219
                  7899*******.88888888877765444........4999*************99988775 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.3   3.9e+03     111     132 ..    2135    2156 ..    2110    2162 .. 0.78
   2 ?   10.9   0.0   0.00031      0.37       4      77 ..    2383    2450 ..    2380    2467 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.3
                     xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  111 nvkihfgRPnlkevlkdiaskh 132 
                      +++  + P+l++v+++ +++ 
     CDO70333.1 2135 YQQMLDAHPDLRNVFSHSKQQR 2156
                     6789999*********995444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00031
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6    4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTse 77  
                     v+l+++G+G+tp++ +l  l+k +       ++++ + +vr++ ++ +fkd   ++   ++e +++++++++  
     CDO70333.1 2383 VVLLSAGVGLTPLLAMLNTLVKAEG----PEREVSWVQAVRDE-HVHAFKDHVAKVRAAHPE-RVKTTVFYSDP 2450
                     9*********************998....899999999***96.578999999999999999.99999998865 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.22       2      97 ..    2259    2374 ..    2258    2375 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                     EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECET..TCCEEEEEE.BSSTTECCEEEEEEE--..................TT-HH CS
  FAD_binding_6    2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkik..geaviRsYtpissenekGelellvkvy..................pgGkm 75  
                     +++++k + s+++  f +k ++ k    +++Gq++ ++  ++  g    R+Y+ +s+  +  ++ + vk+                   +   +
     CDO70333.1 2259 FVVAKKVKESDEITSFYLKPKDGKPLEPYRPGQYISVQKLVPelGILQSRQYS-LSDAPNPEYFRISVKREpgvravspsggldtaqaaHPAWI 2351
                     578999999****************99**********988662366778****.777778889*******9999*****999999999877889 PP

                     HHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6   76 sqaL.delkigdtleikGPlGkf 97  
                     s++L   ++ gdt+e+  P+G+f
     CDO70333.1 2352 SNLLhGTVHEGDTIEVAFPYGEF 2374
                     9***5559*************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.061        73       6      23 ..      25      42 ..      24      46 .. 0.87
   2 ?    2.3   3.5      0.16   1.9e+02      52     117 ..     383     460 ..     335     470 .. 0.63
   3 ?    0.8   0.0      0.46   5.5e+02      85     127 ..    1187    1230 ..    1164    1234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.061
      AAA_22  6 gilvvtGesGtGKTtllr 23
                +++ v+G+ G+GK+ l+ 
  CDO70333.1 25 NFTSVIGPNGAGKSNLMD 42
                6899**********9886 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
      AAA_22  52 sskdllrellralglelkaerlsseellealeqalrarav....ielliiDEaqhlr..s......eealeeLrslln 117
                 +++  lr + ra +  ++ +r   +  l++ e+ l+++++     ++l +DE q l   s      ++ l++L++ l+
  CDO70333.1 383 KLQADLRTVQRAANAAQEQQRRAAQTTLSLSEESLEEYRRlkadASVLAVDERQSLEtlSrdektaARTLTHLKDKLD 460
                 33444444444444444444445555556666666666666668************7773566455555555555444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.46
      AAA_22   85 alraravielliiDEaqh.lrseealeeLrsllnl.srkgvqliL 127 
                  a+++++  +++++DE++  l  ++++ ++ s     +++ +q+i+
  CDO70333.1 1187 AIHSYQPSPFFVLDEVDAaL-DNTNVAKIASYIRShASDTFQFIV 1230
                  4566666789********99.555555553333323456666666 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00029      0.35      14      33 ..      27      46 ..      24      78 .. 0.82
   2 ?   -2.9   4.6       7.7   9.3e+03      47      99 ..     309     377 ..     279     436 .. 0.65
   3 ?   -2.0   4.0       3.8   4.6e+03      54     103 ..     452     505 ..     427     553 .. 0.51
   4 ?   -1.5   1.7       2.7   3.2e+03      34      80 ..     875     941 ..     861     969 .. 0.51
   5 ?    5.8   0.0     0.016        19      49     134 ..    1102    1201 ..    1035    1204 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
                EEEEESTTSSHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllag 33
                + ++G+nGaGKS L+ +++ 
  CDO70333.1 27 TSVIGPNGAGKSNLMDAISF 46
                679**************985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.7
                 CEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTCHHHHHHHSTTGGTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  47 kdlkeqeleslrkeigvlpqepqlfpeltvren................esdeeiekalsklglkelkd 99 
                 k l++ + e++r++++v+++e+++++  ++ e+                 ++e++e+ l+kl+++e ++
  CDO70333.1 309 KALEDARAEQARARSSVMQKEKRIKKAEKALETkrpdlvrieaqilhaqRKREKAEQELDKLRQTEADQ 377
                 445557777888888888888888887777777788888888888877633333444444444444222 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.8
                 HHHCCHCEEEE-SS.--S-TTSBHHHH...HHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqe.pqlfpeltvren...esdeeiekalsklglkelkdtvvk 103
                 l++l+ ++  l+q+ ++l ++ +v+++   e d++++++ ++l+ ++ + ++++
  CDO70333.1 452 LTHLKDKLDDLTQKrDKLADDEQVQSQkkaELDAKVSQLSDELKRVKQEYDNQQ 505
                 555555555555555555555555555555222333333222222222222221 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.7
                 SS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS.--S-TTSB.HHHH................H CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxx.xxxx................x RF
    ABC_tran  34 llkpteGeilldgkdlke..qeleslrkeigvlpqe.pqlfpelt.vren................e 80 
                   +  e+ i+ + ++l++   e++++++ei   ++  ++l++el+ ++e                 +
  CDO70333.1 875 RIRTYEEIIQTETQNLQRlhGERTEAQNEITEAEEAiTTLQEELKeLAEVldektkkveevkkttsK 941
                 4455566667777777776644444444444444444444444432222255344444434433322 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.016
                  GGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH...........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHH....HTSSE CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
    ABC_tran   49 lkeqeleslrkeigvlpqe.pqlfpeltvren...........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarall....kkpkl 129 
                  +k+++ e ++k    +++  +q+ ++lt ++            e++ee+++a  k+      ++   +++++LSgG+k   ala +++    + +++
  CDO70333.1 1102 IKRRRCELFNKAYNHISERiDQVYKDLTKGKMaptggvayltlEDSEEPYTAGIKYHAMPPMKRF--RDMEQLSGGEKTIAALALLFAihsyQPSPF 1196
                  33344444444444444444444444443333677777777777777777777777666644444..467***********9998876111134556 PP

                  EEEES CS
                  xxxxx RF
    ABC_tran  130 lllDE 134 
                  ++lDE
  CDO70333.1 1197 FVLDE 1201
                  66666 PP

>> ApoC-I  Apolipoprotein C-I (ApoC-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.1         6   7.1e+03       5      55 ..     449     499 ..     445     502 .. 0.65
   2 ?    6.6   3.2    0.0061       7.3       5      29 ..     908     932 ..     905     944 .. 0.84
   3 ?    3.6   0.3     0.053        63      24      57 ..    1093    1128 ..    1072    1131 .. 0.83
   4 ?    7.7   0.0    0.0028       3.3       8      39 ..    1598    1631 ..    1592    1634 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6
                 TSSC....HHHCHHHHHHHHHH.CCHCCCHCTTSSSSCCHHHHHHHHHHHHH CS
      ApoC-I   5 esafeslpdklkEfgktledKa.raaieeIkqSelpaktrnWfsetfekvke 55 
                 + ++++l+dkl  ++++    a  + +++ k+ el ak  + +s+++++vk+
  CDO70333.1 449 ARTLTHLKDKLDDLTQKRDKLAdDEQVQSQKKAELDAKVSQ-LSDELKRVKQ 499
                 66788888888888875333331356777777777777765.6777777776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0061
                 TSSC....HHHCHHHHHHHHHHCCH CS
      ApoC-I   5 esafeslpdklkEfgktledKaraa 29 
                 e+a++ l++ lkE+++ l +K++++
  CDO70333.1 908 EEAITTLQEELKELAEVLDEKTKKV 932
                 678999****************974 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.053
                  HHHCCHCCCHCT..TSSSSCCHHHHHHHHHHHHHHS CS
      ApoC-I   24 dKaraaieeIkq..SelpaktrnWfsetfekvkekl 57  
                   Kar+ ++eIk+   el  k  n +se + +v + l
  CDO70333.1 1093 KKAREQFNEIKRrrCELFNKAYNHISERIDQVYKDL 1128
                  69********973369************99997766 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0028
                  C....H..HHCHHHHHHHHHHCCHCCCHCTTSSS CS
      ApoC-I    8 feslpd..klkEfgktledKaraaieeIkqSelp 39  
                  fe+lp+   l E++ +l +K+r+++ eIkq  l+
  CDO70333.1 1598 FERLPNlaILYELTIELNSKTRTLVREIKQDPLA 1631
                  67776422589*******************8776 PP

>> CbiG_C  Cobalamin synthesis G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0014       1.7      20      75 ..     789     845 ..     773     855 .. 0.80
   2 ?   -0.0   0.6       1.1   1.3e+03      19      56 ..     920     957 ..     910     986 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
                 HHHHHHHCT--GGGEEEEEESSCCSHHHHHHHHHHHCTST.EEEE-HHHHHCHHCSC CS
      CbiG_C  20 ieealeeaglseeavaalatidlKadepgllelaeklglp.lktfsaeeLaavevpn 75 
                 +++a ++++  +++++ala++   a+   + e+++++g+  ++ +++ +L+ v+  +
  CDO70333.1 789 LRKAQAAYDDVKSKIDALASVINAAEDDIFAEFCQRIGVAnIREYEERQLKLVQAES 845
                 45555566666789************************987**********997633 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
                 HHHHHHHHCT--GGGEEEEEESSCCSHHHHHHHHHHHC CS
      CbiG_C  19 aieealeeaglseeavaalatidlKadepgllelaekl 56 
                  ++e+l+e+  + e+v++  +  +Ka  ++l e+a++ 
  CDO70333.1 920 ELAEVLDEKTKKVEEVKKTTSKAAKALDQALKEVASHN 957
                 46788888999999999999999999999999988765 PP

>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.4         3   3.6e+03      10      59 ..     293     341 ..     288     370 .. 0.61
   2 ?   -2.3   0.2       1.1   1.4e+03       3      63 ..     908     973 ..     906     981 .. 0.67
   3 ?    9.7   0.0   0.00026      0.32       8      97 ..    1381    1466 ..    1370    1489 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3
  Coprogen_oxidas  10 qdeivkaleeldgkakfkedewereeggggisrvledgkvfekagvnvsv 59 
                      q++ ++ l++ + k+  k+ e  r+e+ +++s v+++ k ++ka  ++ +
       CDO70333.1 293 QNQTLAGLRAEQRKH-EKALEDARAEQARARSSVMQKEKRIKKAEKALET 341
                      555555565555333.2233334556899999999999999998766554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
  Coprogen_oxidas   3 eellkelqdeivkaleeldgkakfked.ewereeg....gggisrvledgkvfekagvnvsvvegk 63 
                      ee +++lq+e+ +  e ld+k+k  e+ + + ++      ++   v ++ + +ek g + s+++ k
       CDO70333.1 908 EEAITTLQEELKELAEVLDEKTKKVEEvKKTTSKAakalDQALKEVASHNDEIEKLGLERSAIYRK 973
                      678899999998888888866543333022222332333677778888889999999999999875 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00026
  Coprogen_oxidas    8 elqdeivkaleeldgkakfkedewereeggggisrvledgkvfekagv.nvsvvegklpesavkqmraekkeeleeleffaagvslvihpr 97  
                       +lq +i++  ++l ++++f ++e +re++ +++ rvle+ +++ k  + n++v++g+l e+  +q+      +l+ l + +  + lv+h+r
       CDO70333.1 1381 ALQIDIMQLGQALWETERFLREEQHREDEARARERVLEEHRLMHKDMItNFAVIQGQLKEADEAQR-----VRLNVLLMRTSPLTLVLHAR 1466
                       56667777767777889*********99****************987659*********9998888.....45666677777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2770  (0.154498); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                       217  (0.0121033); expected 17.9 (0.001)
Passed Fwd filter:                       106  (0.00591221); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 3.00u 0.43s 00:00:03.43 Elapsed: 00:00:00.73
# Mc/sec: 10421.70
//
Query:       CDO70334.1  [L=198]
Description: hypothetical protein BN946_scf184843.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-07   30.2   0.4    6.7e-07   29.6   0.4    1.4  1  4HBT      Thioesterase superfamily
  ------ inclusion threshold ------
      0.017   15.4   1.3      0.024   14.9   1.3    1.3  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.4   7.5e-11   6.7e-07       2      75 ..     103     179 ..     102     183 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 7.5e-11
                 SSB-HHHHHHHHHHHHHHHHHHTTST...TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTS CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr...gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedg 75 
                 G++hgG+++ l+D++ ++al  lg +   + ++v   l+  f++p+    +l++    +  g ++++ + e++d ++
  CDO70334.1 103 GNMHGGCTMFLIDVCSSIALVALGVAthkNARFVSQTLNTVFHAPAMGNARLRIVNDTVSFGARTVSARTEIWDITN 179
                 99***********************************************************************9765 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.3   2.7e-06     0.024     113     244 ..      42     188 ..       1     191 [. 0.55

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-06
                 .............--SSGGGSGG..TEEEE-HHT---S.......S-EEEEEEEET......TTS-SSHHHHHHHHTT-...-GGGGTSS-......SB CS
      4HBT_3 113 d............eaplplfrrvpgflepfeprpaeggkpdspagpkrvrqWvrlr......eggepahlaaLaylsDs.f.pvprvhglrldaeasgw 191
                 +            ++p ++++ ++ +l++ e    e    ++++ +++vr  +         +++ ++h  + ++l D+   ++++++g++   ++   
  CDO70334.1  42 RaailhfasiilrREPDKFAQPTASRLDFTEVAVFE----REEDRRTQVRAVFHIDlgpdmlNPAGNMHGGCTMFLIDVcSsIALVALGVATH-KN-AR 134
                 022222222222222222222223333333333221....12222333333333335566665555789889999999955766677777753.33.68 PP

                 --EEEEEEEE-S--S-....EEEEEE-SEEETTEEEEEEEEE-TT.S-EEEEEEE CS
      4HBT_3 192 mpsldltiyfhrepae.deWllleaetpwagdgrglvearlwded.GrlvAtstQ 244
                 ++s +l++ fh+ pa  +  l++  +t ++g   + ++ ++wd +  rlvAt ++
  CDO70334.1 135 FVSQTLNTVFHA-PAMgNARLRIVNDTVSFGARTVSARTEIWDITnKRLVATGVH 188
                 ***********9.8634899***********************98799***9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1345.26
//
Query:       CDO70335.1  [L=94]
Description: hypothetical protein BN946_scf184843.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 658.79
//
Query:       CDO70336.1  [L=537]
Description: hypothetical protein BN946_scf184843.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-38  131.3  34.0    5.4e-38  130.8  34.0    1.1  1  MFS_1     Major Facilitator Superfamily
    1.8e-12   46.9  14.3      7e-12   44.9  14.3    2.0  1  Sugar_tr  Sugar (and other) transporter
    1.2e-07   30.6   0.9    1.7e-07   30.1   0.9    1.1  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8  34.0     9e-42   5.4e-38       2     343 ..     141     519 ..     138     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 9e-42
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 +l+++ +a+a +i++  +   ++e++++s+ ++ l ++l  +g++++ l+l++ls+ +Grr+++++ +l+++++  +++ +a ++ +llv+r+l+Gl++
  CDO70336.1 141 ALSVVSIAFATAIIAGDFG-GVMEEFHVSEVVVALSVSLMIIGFGIGPLILAPLSELHGRRPFWVAPFLVYIIF-NIPCaLAKNIGTLLVSRFLCGLFG 237
                 4555566666666666666.99****************************************************.44442579999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeee......... 188
                 ++ f++++ +iad++  +erg+a++l++a+   G++lgp++gg++ + +gWr++f+++ i++ +++  +  + +pe++ +    + ++++         
  CDO70336.1 238 SGPFALAGGAIADIWDNNERGFAVALFAAAPYGGPVLGPIVGGFIGETIGWRWIFWVNMIFAGVVAClC--ATIPETYAPAILLKRAKRLreetgdphi 334
                 *************************************************************99985425..8888888888888888777999999998 PP

       MFS_1 189 ............kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdr... 270
                             + + +++++p ++++ + p l  + l+a+l+ +  ++++++ +p+ + e +g++ g ++++  +  + l+g++lal+++  + r   
  CDO70336.1 335 tteqelfkkslkEIVIETAVRP-FQMIATEPILTlMSLYASLIYG-LLYAFFFSFPIVFSEGYGYNdG-ITGL--MFCSVLIGVGLALFVTPRLERnyi 428
                 8887777776666666666666.********77445555555555.7888999999999*******88.7777..666666666666677776666688 PP

       MFS_1 271 .........lgrrrrlllallllllaalglallavtssavllll......vlvl.....iGfglgfvfpsllalasdlappeeagtasglfnt 343
                            ++ rl+ +++++ ++ + ++l   ++ +++ ++      +  l     i  glg ++p++++ + +++++  a+++ g++++
  CDO70336.1 429 rraqakgghADPEDRLIGMMIGCWFIPIVVVLYFSANAYIIDAFpgyvasA--LaakivIRSGLGAATPLFITPMFHNLGNGWAASVWGFISL 519
                 888888888888****************99999999555555555444332..245666999**************************99986 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9  14.3   1.2e-15     7e-12      43     274 ..     164     383 ..     116     534 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.2e-15
                 H......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHH CS
    Sugar_tr  43 e...ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRga 138
                 e   s+v + l+vs++++G  iG l++ +l++  GR++  ++  ++++i ++ +a+ak   ++  l+v+R+l+G++  +  +l+   i+ i   + Rg+
  CDO70336.1 164 EfhvSEVVVALSVSLMIIGFGIGPLILAPLSELHGRRPFWVAPFLVYIIFNIPCALAK---NIGTLLVSRFLCGLFGSGPFALAGGAIADIWDNNERGF 259
                 155578999*************************************************...************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---..HHHHHHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHH CS
    Sugar_tr 139 lvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPES..Prylvekgkeeeakevlaklrge.edadrelaeekdsleae 234
                  v l+  a   G +++ i+g ++ +t +   wr+ +++++++a +++ l  ++PE+  P  l+++ k+ + +++   + +e e+ +++l+e++ ++   
  CDO70336.1 260 AVALFAAAPYGGPVLGPIVGGFIGETIG---WRWIFWVNMIFAGVVACLCATIPETyaPAILLKRAKRLREETGDPHITTEqELFKKSLKEIVIETAVR 355
                 **********************999998...************************94455555555555555555554444344444444444444333 PP

                 HH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHH CS
    Sugar_tr 235 qeeekaswkellssktvrqrlligvvlqifqqltGinaim 274
                    +++ +           ++l+ + l +     G  + +
  CDO70336.1 356 -PFQMIAT----------EPILTLMSLYASL-IYGLLYAF 383
                 .2222222..........3444333333222.22333332 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.9   2.8e-11   1.7e-07      50     213 ..     141     306 ..     104     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.8e-11
       TRI12  50 slnvvatyfvlqasasalpnilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgv.aag 146
                 +l vv+  f     a  +  ++++   se   +l  +l  +g  +  l++  l++  grrpf ++  ++ ++  i  + a+++ tll +  l g+  +g
  CDO70336.1 141 ALSVVSIAFATAIIAGDFGGVMEEFHVSEVVvALSVSLMIIGFGIGPLILAPLSELHGRRPFWVAPFLVYIIFNIPCALAKNIGTLLVSRFLCGLfGSG 239
                 577888888888888889999999999998615566899************************************9999***************73689 PP

       TRI12 147 pagasplfvgelmsnktkflgl.livsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavlli 213
                 p   +   + ++  n+ + + + l  ++p      l+p +g  +     wrwif++ +i + +   l 
  CDO70336.1 240 PFALAGGAIADIWDNNERGFAVaLFAAAPY-GGPVLGPIVGGFIGETIGWRWIFWVNMIFAGVVACLC 306
                 *99999999999998877555515566665.5556**********************99987766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3498.78
//
Query:       CDO70337.1  [L=290]
Description: hypothetical protein BN946_scf184843.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-59  200.9   0.1    3.2e-59  200.7   0.1    1.0  1  Y_phosphatase3   Tyrosine phosphatase family
    3.2e-05   23.6   0.0    4.4e-05   23.2   0.0    1.3  1  Y_phosphatase    Protein-tyrosine phosphatase
    0.00022   20.8   0.0    0.00034   20.2   0.0    1.3  1  Y_phosphatase2   Tyrosine phosphatase family
     0.0062   16.7   0.0      0.017   15.2   0.0    1.8  1  PTPlike_phytase  Inositol hexakisphosphate
  ------ inclusion threshold ------
      0.011   15.5   0.1      0.034   14.0   0.1    2.0  2  DSPc             Dual specificity phosphatase, catalytic doma
      0.018   14.5   0.0      0.035   13.6   0.0    1.4  1  KNOX2            KNOX2 domain


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   0.1   1.1e-62   3.2e-59       2     231 ..      40     289 ..      39     290 .] 0.89

  Alignments for each domain:
  == domain 1  score: 200.7 bits;  conditional E-value: 1.1e-62
  Y_phosphatase3   2 plegvsNfRDlGgyptadgrk..vrpgvlyRsaelsklteadlakLadlgirtviDLRspeErea..eap..legaryvhlpv.......e.eaa 82 
                     + egv+N+RD+G      g+   +rp++lyR++els++te+++++L++lg+rtv+DLR+++E ++  +ap  ++g ++v+lp+       +  a+
      CDO70337.1  40 SAEGVFNMRDFGAACHVAGSPtrIRPRMLYRAGELSHITERGVEQLRALGVRTVFDLRTDDETARykTAPraIDGLKIVRLPItehvgspKdVAH 134
                     579*********95544333226***************************************87776666777888*******999987632348 PP

  Y_phosphatase3  83 eeekeeeeaeetlaelYrellesakkayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltneyleelrerlkakle 175
                     + ++ e+++ +++ ++Y+++l+s+++++++v+++l+d  + p+++HCtaGKDRTGv+aa +l+llG+ +edi+aDY+lt+ +l+++ + ++ +++
      CDO70337.1 135 RLKDFEANELDAFLQAYARILQSNASSLERVLRHLRDrPDePCIIHCTAGKDRTGVFAAAILMLLGARDEDIIADYALTEVGLQPVVAMFAVRFQ 229
                     88889999999**************************6448************************************************988887 PP

  Y_phosphatase3 176 ee.llaea...leellsvrpeyleaaldaieekygsvegYlreelglseeeiealrerll 231
                     +e + +e+   + ++ s+rp+ ++++ld++++++g++e +l+++  l + + +++r++ll
      CDO70337.1 230 REaVFRENwtgTLNMGSARPQSMRRFLDHVRQRHGGIEPFLTKHTSLRDVDFQRIRANLL 289
                     7743344488999*********************************************98 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.5e-08   4.4e-05     151     201 ..     158     205 ..     146     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.5e-08
                    CCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHS CS
  Y_phosphatase 151 saksllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqleaee 201
                    +a+sl +++r ++ +    ++p+++hC aG  Rtg+f+a+ ++l  +++e+
     CDO70337.1 158 NASSLERVLRHLRDRP---DEPCIIHCTAGKDRTGVFAAAILMLLGARDED 205
                    4555666777777776...9*******************999987777755 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   0.00034      53     127 ..     137     210 ..     112     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
                     HHCT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHH CS
  Y_phosphatase2  53 eeekiklyhiaiesnkeelveiksdllkkalklllnkenypvllhckrGkhrtglvigclRklqkWslasilnEy 127
                     +  + +++ ++++  +    + + ++l+++l+ l ++   p+ +hc+ Gk rtg+  +++  l +     i+++y
      CDO70337.1 137 KDFEANELDAFLQAYAR-ILQSNASSLERVLRHLRDRPDEPCIIHCTAGKDRTGVFAAAILMLLGARDEDIIADY 210
                     55555566666666666.7889999******************************99988777766666666666 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.8e-06     0.017     114     155 ..     140     198 ..      72     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.8e-06
                      -HHHHHHHHHHHHTS.-T................T-EEEEE-SSSSHHHHHHHHHHHHH CS
  PTPlike_phytase 114 eeedfdalvsilkea.pe................ktalvfnCqmGrgRTTtamviatLl 155
                      e++++da++++ ++  ++                +++++++C +G+ RT ++ +++ +l
       CDO70337.1 140 EANELDAFLQAYARIlQSnasslervlrhlrdrpDEPCIIHCTAGKDRTGVFAAAILML 198
                      56677777776666643367778888888888889***************999998887 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05     0.034      72      96 ..     173     197 ..     115     238 .. 0.87
   2 ?   -3.9   0.0       3.8   1.1e+04     103     118 ..     252     267 ..     250     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                 TT-EEEEEESSSSSHHHHHHHHHHH CS
        DSPc  72 kgkkvlVHCqaGisRSatliiaYlm 96 
                   + +++HC+aG  R++ +++a lm
  CDO70337.1 173 PDEPCIIHCTAGKDRTGVFAAAILM 197
                 467899****************999 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHSTT-S CS
        DSPc 103 lneayeflkerrpais 118
                 ++ +++++++r + i 
  CDO70337.1 252 MRRFLDHVRQRHGGIE 267
                 5566667777766665 PP

>> KNOX2  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.035       6      31 ..     142     167 ..     138     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
       KNOX2   6 pELDqFMeaYcdvLvkYkeeLtrpve 31 
                  ELD F++aY ++L +  + L+r+++
  CDO70337.1 142 NELDAFLQAYARILQSNASSLERVLR 167
                 7**************99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1937.22
//
Query:       CDO70338.1  [L=173]
Description: hypothetical protein BN946_scf184843.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      112  (0.00624686); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1261.05
//
Query:       CDO70339.1  [L=286]
Description: hypothetical protein BN946_scf184843.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1941.87
//
Query:       CDO70340.1  [L=374]
Description: hypothetical protein BN946_scf184872.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-36  126.0   0.1    3.5e-36  125.4   0.1    1.1  1  Peptidase_C14  Caspase domain
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.34   11.1   0.0    1.6  1  DUF5554        Family of unknown function (DUF5554)


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.1   3.9e-40   3.5e-36      32     245 ..     113     368 ..     111     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 3.9e-40
                    HHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET..............EEECTTC............... CS
  Peptidase_C14  32 LvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae..........civpvdv............... 95 
                    L +r g++ ++i iltdd       pt++ni++a+++lvk+a   p Dsl++hysGHG++++++           i p d+               
     CDO70340.1 113 L-TRHGYSARDIEILTDDtsdprrlPTRANILEAMRRLVKDAH--PHDSLFFHYSGHGGQIKDKdgdeidgydeIIFPLDHksagyisddvgtpfs 205
                    5.788**************************************..**************99988999*******8888888888888888899999 PP

                    .....SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESESSSBCBEEEEEEES-SSS.............HCCCHCHHHHHHCSHHCEEECTTTSEE CS
  Peptidase_C14  96 .....nsliqdddirdlfggdklpslagkpktiiidaCrgglldkgiekdtsptnk.............feedssskekkpekqslsklpseadvl 173
                          + + +d++++++++++lp ++  ++t+++d C  ++l + +  d+++ +               + d   k ++  k+  +   + adv+
     CDO70340.1 206 msilsADRCCLDQLMHTMMVKPLPPGC--RLTALFDVCIANALVRVLRADSDSVSFvyspatlapsstcPTCDGRVKGSQVTKKWHDYKATLADVI 299
                    9888866777778999999********..**********888855555555555547777777777776566788888899999999999999*** PP

                    EEESSSTTBSCEEETTTEE...HHHHHHHHHHHHHTTTSBHHHHHHHHHHHHCCTTTCTTSBEEEEEEEEESSSB CS
  Peptidase_C14 174 llsgcqddqtSadgsengs...aftqalqkvleekggkislkellnkvrkrlkslkkkngykqrPglssndltkk 245
                      sgc+d qtSad+ e+g    a+++a++ +l+++ + +s+++ll+ vr  l +    ++y+q+P+lss++  ++
     CDO70340.1 300 TWSGCKDSQTSADTWEQGVatgAMSHAFISSLAQNPK-QSYQDLLRSVRVIL-K----KKYSQKPQLSSSHHIDT 368
                    ********************************55444.6*************.3....46*********987665 PP

>> DUF5554  Family of unknown function (DUF5554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.8e-05      0.34       6      68 ..     300     368 ..     296     371 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.8e-05
     DUF5554   6 vwlscldsdscnltfrlgev...esha.cssllwnlltqy..llpgvghilrtnfpvlpcvsschligg 68 
                  w  c ds++   t+  g      sha  ssl  n    y  ll  v  il+ ++   p +ss h i  
  CDO70340.1 300 TWSGCKDSQTSADTWEQGVAtgaMSHAfISSLAQNPKQSYqdLLRSVRVILKKKYSQKPQLSSSHHIDT 368
                 6999*****9999999886422268984588888876544449**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2769.37
//
Query:       CDO70341.1  [L=471]
Description: hypothetical protein BN946_scf184872.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-52  177.6   0.0    2.9e-51  174.4   0.0    2.0  1  Pkinase        Protein kinase domain
    2.4e-22   79.5   0.0    3.2e-22   79.0   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0016   17.8   0.0      0.014   14.8   0.0    2.0  2  Kinase-like    Kinase-like
     0.0073   16.3   0.0      0.016   15.1   0.0    1.7  2  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.043   13.2   0.0      0.069   12.5   0.0    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
       0.05   12.5   0.0       0.13   11.2   0.0    1.6  1  Haspin_kinase  Haspin like kinase domain
       0.19   10.7   0.0        0.3   10.1   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   1.1e-54   2.9e-51       2     264 .]      16     276 ..      15     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 1.1e-54
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE..........SSEEEEEEE--TTEBHHHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee..........kdelylvleyveggeladll 89 
                 + ++++G G+f++Vy+av+ e+g+  A+K+i+   ++ + + k+v +Ei+++  lkh++i++l+++ +              +yl++e++ gg+l+d +
  CDO70341.1  16 KLVKQIGGGGFSTVYQAVNVEKGRVAACKVIAITPETTEAQlKSVDKEIRVHSALKHRYILELIGAAKLpperalasgyFPAVYLLMEMAAGGDLFDKI 114
                 6789****************************9999988888**************************999******9999****************** PP

                 HHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHH CS
     Pkinase  90 erkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWs 182
                   +  ++e+ a +++ q+l+gl+y+H++g++HrDlKpeN+L+d  g lKi+DFGl++ ++ + +     l++++g+  YlAPE+ ++ +y  +++DvW+
  CDO70341.1 115 APDEGIDEDVAHFYFCQMLAGLQYIHEEGVCHRDLKPENLLLDAAGTLKISDFGLCAVYKLKDTgrtrmLNERCGSLPYLAPEMRGNDSYaAEPIDVWG 213
                 ***********************************************************99998999******************99999899*****9 PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                             +p+    + ++ ++e++q       l+ + ++ + ++ + e a++l++ +l++dp++R+t +e+  hp++
  CDO70341.1 214 S----------DTPWD---EPTRGSHEFMQ------YLTGECFNHDPWNRFGEGALSLITGMLDVDPSHRMTLNEVSGHPWV 276
                 5..........66777...33333444445......4555578899***********************************6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.3e-25   3.2e-22       2     189 ..      16     212 ..      15     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.3e-25
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE...SSSS.........EEEEEE--TTEB CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct...keep.........llivteyvkgGd 87 
                  +l k++G G f++V+++     ++ +   + v  ++ e+te + +++ +e+++ ++lkh+ i++l+g+     +  +         +++++e+++gGd
   CDO70341.1  16 KLVKQIGGGGFSTVYQAVNV--EKGRVAACKVIAITPETTEAQLKSVDKEIRVHSALKHRYILELIGAAKlppE--RalasgyfpaVYLLMEMAAGGD 109
                  6889*************999..344444444445678999999**************************97641..23667778899*********** PP

                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE..EETTSSTSGGGGS-HHHHHHSEEE CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey..vkkeeaklpvkWmapEslkekkft 183
                  L + +  +  e ++ +    +  q+ +G++y++++ + Hrdl   N Ll+   + kisDfGL+   + +d+   ++ +e+  ++ ++apE+  + ++ 
   CDO70341.1 110 LFDKIAPD--EGIDEDVAHFYFCQMLAGLQYIHEEGVCHRDLKPENLLLDAAGTLKISDFGLCAVYKLKDTGrtRMLNERCGSLPYLAPEMRGNDSYA 205
                  *****997..888888888899999**************************************98855555422666677789********9999876 PP

                  HH.HHHH CS
  Pkinase_Tyr 184 sk.sDvW 189
                   +  DvW
   CDO70341.1 206 AEpIDVW 212
                  5527999 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11   2.8e+02      15      60 ..      16      61 ..      13      77 .. 0.86
   2 !   14.8   0.0   5.3e-06     0.014     148     200 ..     128     181 ..     103     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
  Kinase-like 15 vrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlk 60
                 + ++ ++ g++s v+++ ++e+g   a kv  ++ e  + +l+ + 
   CDO70341.1 16 KLVKQIGGGGFSTVYQAVNVEKGRVAACKVIAITPETTEAQLKSVD 61
                 567789999*********************9999999888888765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.3e-06
  Kinase-like 148 llTlqlirlaanLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvl 200
                  +   q++   ++++++g+ h +++++nllld  g l++ +f+  a ++ ++ ++ 
   CDO70341.1 128 YF-CQMLAGLQYIHEEGVCHRDLKPENLLLDAAGTLKISDFGlcAVYKLKDTGRT 181
                  55.5666667999***************************974456666666654 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.4e-06     0.016     164     196 ..     140     170 ..      65     173 .. 0.82
   2 ?   -3.9   0.0       4.1     1e+04      33      48 ..     218     233 ..     215     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.4e-06
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +++++H+Dl+p Nll+d++++    + Df+++
  CDO70341.1 140 HEEGVCHRDLKPENLLLDAAGTLK--ISDFGLC 170
                 4789**************666555..6676665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.1
                 -HHHHHHHHHHHHHHH CS
         APH  33 aaeeirrevallrlLa 48 
                 ++e +r+ ++++++L 
  CDO70341.1 218 WDEPTRGSHEFMQYLT 233
                 78999999*****997 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.069     125     163 ..     130     164 ..      91     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
         Kdo 125 kavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                  +  +  + +h+ gv+H+dl + n+ll++++    ++ +
  CDO70341.1 130 CQMLAGLQYIHEEGVCHRDLKPENLLLDAAG----TLKI 164
                 5555566789******************998....4444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.1e-05      0.13     110     257 ..      23     173 ..       6     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.1e-05
  Haspin_kinase 110 eklssevyqtke..kdkevvlKviplevledvtiskelsl.kelkslklvkgtypglllllqdkvlkek.pdfyseqqlflvlllkdkGtdLeev. 200
                     + +s vyq+ +  k + +++Kvi++   ++ t  ++ s+ ke +    +k  y  l l+  +k+  e+   +     ++l++++  +G+  +++ 
     CDO70341.1  23 GGGFSTVYQAVNveKGRVAACKVIAI--TPETTEAQLKSVdKEIRVHSALKHRYI-LELIGAAKLPPERaLASGYFPAVYLLMEMAAGGDLFDKIa 115
                    5568999**999867778899***99..899999999999667777777777753.4444455565555345555566777777777888888887 PP

  Haspin_kinase 201 ..klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                      +  + + a   f q+++ L+   ++    HRdL+ +n L+d++++  + d+ l+ + 
     CDO70341.1 116 pdEGIDEDVAHFYFCQMLAGLQYIHEE-GVCHRDLKPENLLLDAAGTLKISDFGLCAVY 173
                    666666666777777777777554433.578**********************998765 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012       0.3     149     186 ..     132     166 ..     122     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
  Seadorna_VP7 149 aglkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   + l  L+ +h  ++++ h D +penl+ D  G lk+ D
    CDO70341.1 132 M-LAGLQYIH--EEGVCHRDLKPENLLLDAAGTLKISD 166
                   4.67788899..67889*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3569.57
//
Query:       CDO70342.1  [L=259]
Description: hypothetical protein BN946_scf184872.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1887.97
//
Query:       CDO70343.1  [L=110]
Description: hypothetical protein BN946_scf184872.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      116  (0.00646996); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 732.37
//
Query:       CDO70344.1  [L=412]
Description: hypothetical protein BN946_scf184872.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2665.98
//
Query:       CDO70345.1  [L=409]
Description: hypothetical protein BN946_scf184872.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.9   0.0       0.14   12.8   0.0    1.5  1  FOXP-CC   FOXP coiled-coil domain


Domain annotation for each model (and alignments):
>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.7e-06      0.14       6      30 ..     328     352 ..     325     357 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.7e-06
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseH 30 
                  C WPgC+      ++f+ h+   H
  CDO70345.1 328 DCPWPGCKGKNIPRNTFIDHIAMRH 352
                 5********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2955.81
//
Query:       CDO70346.1  [L=91]
Description: hypothetical protein BN946_scf184872.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-05   23.0   0.0    5.3e-05   23.0   0.0    1.2  1  DSPc            Dual specificity phosphatase, catalytic domai
     0.0097   15.5   0.1       0.01   15.4   0.1    1.1  1  Y_phosphatase   Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.073   12.7   0.0      0.084   12.5   0.0    1.1  1  CDKN3           Cyclin-dependent kinase inhibitor 3 (CDKN3)
       0.19   11.7   1.2       0.23   11.4   0.8    1.4  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   5.3e-05      66     113 ..       4      52 ..       1      81 [. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-08
                 HHHHHHTT-EEEEEESSSSSHHHHHHHHHHHHHHTS.CHHHHHHHHHHH CS
        DSPc  66 idkakqkgkkvlVHCqaGisRSatliiaYlmktknl.slneayeflker 113
                 +++ +++g+  +VHC+ Gi R++ ++ ++l +     + ++a++++ er
  CDO70346.1   4 LRDNENRGRVAAVHCRGGIGRTGLIVGCWLVECGIArDGDDALRMIAER 52 
                 667788888899******************9876554677777777443 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.3e-06      0.01     169     216 ..      10      57 ..       1      66 [. 0.70

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-06
                    TSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHTTS CS
  Y_phosphatase 169 ksgpvvVhCsaGvgRtgtfvaldillqqleaeeevdvlqivkelrkqR 216
                    +     VhC  G+gRtg +v   ++ + + ++++  +  i +++ + R
     CDO70346.1  10 RGRVAAVHCRGGIGRTGLIVGCWLVECGIARDGDDALRMIAERVEERR 57 
                    445568*************99888887777766554444555554444 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.9e-05     0.084     133     156 ..      11      34 ..       1      45 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
                 T--EEEE-SSSSSHHHHHHHHHHH CS
       CDKN3 133 yrktlihcygglgrsclvaaclll 156
                  r + +hc gg+gr+ l+  c l+
  CDO70346.1  11 GRVAAVHCRGGIGRTGLIVGCWLV 34 
                 47788****************987 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   5.1e-05      0.23     116     150 ..       3      41 ..       1      45 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
  Y_phosphatase3 116 alad.ee...pvlfHCtaGKDRTGvlaalllsllGvdee 150
                      l+d e+    + +HC  G  RTG+++   l  +G+ ++
      CDO70346.1   3 VLRDnENrgrVAAVHCRGGIGRTGLIVGCWLVECGIARD 41 
                     5566433677779**************999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 631.24
//
Query:       CDO70347.1  [L=40]
Description: hypothetical protein BN946_scf184755.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 296.72
//
Query:       CDO70348.1  [L=386]
Description: hypothetical protein BN946_scf184755.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2778.77
//
Query:       CDO70349.1  [L=203]
Description: hypothetical protein BN946_scf184755.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1300.41
//
Query:       CDO70350.1  [L=221]
Description: hypothetical protein BN946_scf184755.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.2   0.2       0.68    9.7   0.2    1.9  1  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   3.8e-05      0.68       2     112 ..      76     195 ..      75     205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 3.8e-05
       RVT_3   2 fdgafkkksgaggagvvirdsnGevllagaeklqgkasveeAElqALlrGLqlalklg..........irrlvvegDsktvvqllngrek.vksselan 89 
                  dg++ ++++++ +g++++ + G v ++++++   + s +e+E+ A+ ++ + al l           + ++++ +D+++ + l ++++  +++++++ 
  CDO70350.1  76 ADGSM-HEDRKAISGYAFLIDGGAVSWSSKRQELISLSTTESEYVAITHAAKEALWLRsligqvfapfVDPITLHSDNQSAIALARDNQYhARTKHIDI 173
                 58866.77888899****************997778899*********999888755322222222227788888888888888888887455666666 PP

       RVT_3  90 lldeirkllksfesvsvehipRe 112
                  +  ir++++  +++++ ++p e
  CDO70350.1 174 RYHFIRWVIE-DKKIRLIYCPTE 195
                 6666665554.346666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 1274.29
//
Query:       CDO70351.1  [L=1183]
Description: hypothetical protein BN946_scf184613.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-40  136.3   0.0    3.3e-13   49.6   0.1   11.1 12  PPR_2     PPR repeat family
    1.4e-39  131.5   0.2      9e-05   22.5   0.0   12.6 13  PPR       PPR repeat
    2.2e-29  100.9   0.0    7.3e-06   25.6   0.0   10.4 11  PPR_1     PPR repeat
    1.6e-21   76.1   0.1    1.2e-09   38.1   0.0    8.0  8  PPR_3     Pentatricopeptide repeat domain
    5.9e-13   48.7   3.3      2e-09   37.2   0.4    4.2  4  PPR_long  Pentacotripeptide-repeat region of PRORP
    1.2e-06   28.8  19.9        4.5    8.3   0.0   10.6  9  TPR_14    Tetratricopeptide repeat
    0.00076   19.3   0.9         13    6.1   0.0    5.5  6  TPR_7     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   15.2   2.3        7.7    6.5   0.4    4.9  5  TPR_10    Tetratricopeptide repeat
       0.18   12.5  14.2         23    6.0   0.6    7.0  6  TPR_4     Tetratricopeptide repeat
        1.2    9.6   7.5        1.8    9.0   0.0    4.5  4  BTAD      Bacterial transcriptional activator domain
        1.8    8.5   5.4        8.7    6.2   0.1    4.0  4  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0003      0.48       4      46 ..     200     243 ..     199     247 .. 0.94
   2 !   15.9   0.0     7e-06     0.011       5      31 ..     297     323 ..     294     333 .. 0.93
   3 !   11.2   0.0   0.00021      0.33       4      31 ..     341     368 ..     337     375 .. 0.88
   4 !    7.8   0.0    0.0023       3.8       1      26 [.     387     412 ..     387     414 .. 0.90
   5 ?   -1.2   0.0       1.5   2.5e+03       9      26 ..     756     773 ..     750     775 .. 0.89
   6 ?   -3.0   0.0       5.4   8.7e+03      12      44 ..     804     836 ..     800     837 .. 0.72
   7 !   49.6   0.1     2e-16   3.3e-13       1      50 []     864     913 ..     864     913 .. 0.99
   8 !   16.8   0.0   3.7e-06     0.006       1      30 [.     899     928 ..     899     930 .. 0.95
   9 !    9.9   0.1   0.00052      0.85       6      43 ..     940     978 ..     935     981 .. 0.91
  10 ?    4.3   0.0     0.028        46       6      27 ..     982    1004 ..     979    1007 .. 0.92
  11 !    7.3   0.0    0.0032       5.2       1      49 [.    1020    1068 ..    1020    1069 .. 0.97
  12 !    8.0   0.0     0.002       3.2       6      30 ..    1060    1084 ..    1055    1088 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkkr.glePnsyTysilik 46 
                 ++yN l+  ++ + +++ A  ++   +kr  l P++ T+ +li 
  CDO70351.1 200 HIYNKLLRSCAIHSNPHAAQAVYAHLEKRpDLDPDAQTFISLIA 243
                 68**************************99*********99995 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 7e-06
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkk 31 
                 ++N +++++++ g++++A+ l+++M +
  CDO70351.1 297 VWNEMLTAYFRCGQPSDALNLLEQMMD 323
                 7************************76 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00021
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkk 31 
                  t+ + I+g+c+ g+v  A+ +f+ M +
  CDO70351.1 341 ATFSCTINGFCQLGDVPTALTWFERMLQ 368
                 699999*******************976 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0023
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklf 26 
                 pd  t+++++++l+ +g+v +  +lf
  CDO70351.1 387 PDQATWTAMLDALADEGMVADLNRLF 412
                 8999**************99988888 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.5
       PPR_2   9 lIsglckkgkveeAfklf 26 
                 lIs+l + g+ve+  +++
  CDO70351.1 756 LISALGRSGEVEKLHEVY 773
                 8***********999888 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 5.4
       PPR_2  12 glckkgkveeAfklfneMkkrglePnsyTysil 44 
                 gl+++g++e A    +   ++g  P++  y  l
  CDO70351.1 804 GLAHAGDIEAAHAHRQRILQHGGVPSADAYGAL 836
                 889999999998777777777666777666665 PP

  == domain 7  score: 49.6 bits;  conditional E-value: 2e-16
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50 
                 p+++ yNt+Is l+k++k + A++lf++Mk r++ P+s+Ty  +i ++c+
  CDO70351.1 864 PNIFMYNTIISKLAKARKADFALQLFQDMKARNVHPTSVTYGAVIAACCR 913
                 8************************************************7 PP

  == domain 8  score: 16.8 bits;  conditional E-value: 3.7e-06
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMk 30 
                 p +vty ++I+++c+ g+  +A  lf+eM 
  CDO70351.1 899 PTSVTYGAVIAACCRVGDAASAELLFQEMT 928
                 789**************************6 PP

  == domain 9  score: 9.9 bits;  conditional E-value: 0.00052
       PPR_2   6 yNtlIsglck.kgkveeAfklfneMkkrglePnsyTysi 43 
                 yNt+++ + + k + e  +  +n  ++ +++P+++Ty +
  CDO70351.1 940 YNTMMQLYTHtKPDRERVLYYYNALRQAKVQPTAHTYKV 978
                 ********976889***********************86 PP

  == domain 10  score: 4.3 bits;  conditional E-value: 0.028
       PPR_2    6 yNtlIsgl.ckkgkveeAfklfn 27  
                  + +lI++  c ++++++A+k+f+
  CDO70351.1  982 WAALINAWgCVQKDLDQALKIFD 1004
                  789*****999***********8 PP

  == domain 11  score: 7.3 bits;  conditional E-value: 0.0032
       PPR_2    1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglc 49  
                  pd v+y +l + l+++++++     ++  ++ g+ +++y  + likg++
  CDO70351.1 1020 PDAVVYEALVNTLVTARRMDLVPMYLDRLRSSGVHMTAYIANLLIKGYA 1068
                  89*********************************************97 PP

  == domain 12  score: 8.0 bits;  conditional E-value: 0.002
       PPR_2    6 yNtlIsglckkgkveeAfklfneMk 30  
                   N lI+g++  g++e A ++f+  +
  CDO70351.1 1060 ANLLIKGYASVGEIERAREIFESLQ 1084
                  699******************9866 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.2   3.2e+02       2      26 ..     201     225 ..     200     228 .. 0.86
   2 ?    4.2   0.0     0.038        62       2      27 ..     237     262 ..     236     265 .. 0.90
   3 !   18.5   0.0   1.1e-06    0.0017       2      28 ..     297     323 ..     296     325 .. 0.93
   4 !   17.2   0.0   2.6e-06    0.0042       2      28 ..     342     368 ..     341     370 .. 0.93
   5 !    7.4   0.0    0.0035       5.7       2      23 ..     391     412 ..     390     417 .. 0.83
   6 ?    4.6   0.0     0.029        46       6      23 ..     756     773 ..     755     775 .. 0.90
   7 ?   -0.4   0.0       1.1   1.8e+03       6      20 ..     801     815 ..     800     825 .. 0.81
   8 !   22.5   0.0   5.5e-08     9e-05       1      31 []     867     897 ..     867     897 .. 0.95
   9 !   20.2   0.0   2.9e-07   0.00047       1      27 [.     902     928 ..     902     930 .. 0.96
  10 ?    0.3   0.0      0.66   1.1e+03       3      12 ..     940     949 ..     939     951 .. 0.87
  11 ?   -0.7   0.0       1.3   2.2e+03      11      25 ..     991    1005 ..     991    1007 .. 0.85
  12 ?   -0.8   0.0       1.5   2.4e+03       1      31 []    1023    1053 ..    1023    1053 .. 0.91
  13 !   13.9   0.0     3e-05     0.049       4      27 ..    1061    1084 ..    1058    1085 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.2
         PPR   2 tynslIsgycknGkleeAlelfkeM 26 
                 +yn l+++++ + +++ A  ++  +
  CDO70351.1 201 IYNKLLRSCAIHSNPHAAQAVYAHL 225
                 6***************999988655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.038
         PPR   2 tynslIsgycknGkleeAlelfkeMk 27 
                 t+ slI  y+ +++++ A+++f++ +
  CDO70351.1 237 TFISLIATYSGSRDVHGAEQMFQKFR 262
                 7889******************9876 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1.1e-06
         PPR   2 tynslIsgycknGkleeAlelfkeMke 28 
                 ++n ++ +y ++G++++Al l+++M +
  CDO70351.1 297 VWNEMLTAYFRCGQPSDALNLLEQMMD 323
                 69***********************87 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 2.6e-06
         PPR   2 tynslIsgycknGkleeAlelfkeMke 28 
                 t+++ I+g+c+ G++  Al +f++M++
  CDO70351.1 342 TFSCTINGFCQLGDVPTALTWFERMLQ 368
                 89999********************86 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0035
         PPR   2 tynslIsgycknGkleeAlelf 23 
                 t+++++++++ +G++ +  +lf
  CDO70351.1 391 TWTAMLDALADEGMVADLNRLF 412
                 9*************97766666 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.029
         PPR   6 lIsgycknGkleeAlelf 23 
                 lIs+++++G++e+  e++
  CDO70351.1 756 LISALGRSGEVEKLHEVY 773
                 8***********988887 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.1
         PPR   6 lIsgycknGkleeAl 20 
                 ++ g++++G++e A 
  CDO70351.1 801 MVIGLAHAGDIEAAH 815
                 889*********996 PP

  == domain 8  score: 22.5 bits;  conditional E-value: 5.5e-08
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 ++yn++Is ++k++k + Al+lf++Mk +++
  CDO70351.1 867 FMYNTIISKLAKARKADFALQLFQDMKARNV 897
                 58*************************9875 PP

  == domain 9  score: 20.2 bits;  conditional E-value: 2.9e-07
         PPR   1 vtynslIsgycknGkleeAlelfkeMk 27 
                 vty ++I ++c+ G+   A+ lf+eM 
  CDO70351.1 902 VTYGAVIAACCRVGDAASAELLFQEMT 928
                 8*************************7 PP

  == domain 10  score: 0.3 bits;  conditional E-value: 0.66
         PPR   3 ynslIsgyck 12 
                 yn++++ y +
  CDO70351.1 940 YNTMMQLYTH 949
                 9*****9975 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 1.3
         PPR   11 cknGkleeAlelfke 25  
                  c   +l+ Al++f+ 
  CDO70351.1  991 CVQKDLDQALKIFDS 1005
                  66789********86 PP

  == domain 12  score: -0.8 bits;  conditional E-value: 1.5
         PPR    1 vtynslIsgycknGkleeAlelfkeMkekGi 31  
                  v+y +l++ ++ +++++ +  ++++++++G+
  CDO70351.1 1023 VVYEALVNTLVTARRMDLVPMYLDRLRSSGV 1053
                  678899999999***************9996 PP

  == domain 13  score: 13.9 bits;  conditional E-value: 3e-05
         PPR    4 nslIsgycknGkleeAlelfkeMk 27  
                  n lI+gy++ G++e A e+f+ ++
  CDO70351.1 1061 NLLIKGYASVGEIERAREIFESLQ 1084
                  99******************9875 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3       1.4   2.3e+03       9      16 ..     125     132 ..     124     133 .. 0.87
   2 ?    1.6   0.0      0.14   2.2e+02       3      32 ..     231     260 ..     230     262 .. 0.89
   3 !    6.5   0.0    0.0041       6.7      13      33 ..     301     321 ..     297     322 .. 0.88
   4 !   13.0   0.0   3.9e-05     0.063       5      33 ..     338     366 ..     336     367 .. 0.91
   5 ?    4.5   0.0     0.017        28       5      25 ..     387     407 ..     385     412 .. 0.93
   6 ?   -0.0   0.0      0.46   7.5e+02      13      25 ..     756     768 ..     755     768 .. 0.92
   7 !   24.2   0.0   1.2e-08     2e-05       2      34 .]     861     893 ..     860     893 .. 0.97
   8 !   25.6   0.0   4.5e-09   7.3e-06       2      34 .]     896     928 ..     895     928 .. 0.96
   9 ?   -0.8   0.0      0.77   1.2e+03      21      31 ..     994    1004 ..     984    1006 .. 0.84
  10 ?   -0.0   0.0      0.46   7.5e+02       4      17 ..    1019    1032 ..    1018    1039 .. 0.85
  11 !    7.9   0.0    0.0015       2.5      11      31 ..    1061    1081 ..    1052    1084 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
                 HHHHHHHH CS
       PPR_1   9 TYNtLIdG 16 
                 TY tLI+ 
  CDO70351.1 125 TYATLIST 132
                 9*****96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
                 ----HHHHHHHHHHHHHTS-HHHHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLIdGlCkaGrvdeAfelfde 32 
                 l Pd+ T+ +LI  +    +v+ A+++f +
  CDO70351.1 231 LDPDAQTFISLIATYSGSRDVHGAEQMFQK 260
                 78**********999999999999999976 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0041
                 HHHHHHHTS-HHHHHHHHHHH CS
       PPR_1  13 LIdGlCkaGrvdeAfelfdeM 33 
                 ++ ++ ++G   +A+ l+++M
  CDO70351.1 301 MLTAYFRCGQPSDALNLLEQM 321
                 778999*************** PP

  == domain 4  score: 13.0 bits;  conditional E-value: 3.9e-05
                 --HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   5 PdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 P   T+++ I+G+C+ G+v  A+  f++M
  CDO70351.1 338 PSPATFSCTINGFCQLGDVPTALTWFERM 366
                 66779******************999999 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.017
                 --HHHHHHHHHHHHHTS-HHH CS
       PPR_1   5 PdvvTYNtLIdGlCkaGrvde 25 
                 Pd  T++ ++d+l  +G+v +
  CDO70351.1 387 PDQATWTAMLDALADEGMVAD 407
                 9*****************976 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.46
                 HHHHHHHTS-HHH CS
       PPR_1  13 LIdGlCkaGrvde 25 
                 LI++l + G+v++
  CDO70351.1 756 LISALGRSGEVEK 768
                 9*********985 PP

  == domain 7  score: 24.2 bits;  conditional E-value: 1.2e-08
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G++P+++ YNt+I+ l ka + d A++lf +M+
  CDO70351.1 861 GVVPNIFMYNTIISKLAKARKADFALQLFQDMK 893
                 99******************************7 PP

  == domain 8  score: 25.6 bits;  conditional E-value: 4.5e-09
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 +++P+ vTY  +I ++C+ G+   A+ lf eM+
  CDO70351.1 896 NVHPTSVTYGAVIAACCRVGDAASAELLFQEMT 928
                 799*****************************5 PP

  == domain 9  score: -0.8 bits;  conditional E-value: 0.77
                  S-HHHHHHHHH CS
       PPR_1   21 GrvdeAfelfd 31  
                   ++d A+++fd
  CDO70351.1  994 KDLDQALKIFD 1004
                  589*******9 PP

  == domain 10  score: -0.0 bits;  conditional E-value: 0.46
                  ---HHHHHHHHHHH CS
       PPR_1    4 kPdvvTYNtLIdGl 17  
                   Pd+v Y  L++ l
  CDO70351.1 1019 MPDAVVYEALVNTL 1032
                  59********9976 PP

  == domain 11  score: 7.9 bits;  conditional E-value: 0.0015
                  HHHHHHHHHTS-HHHHHHHHH CS
       PPR_1   11 NtLIdGlCkaGrvdeAfelfd 31  
                  N LI+G+   G++++A e+f+
  CDO70351.1 1061 NLLIKGYASVGEIERAREIFE 1081
                  88******************8 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0017       2.8      12      61 ..     196     246 ..     188     248 .. 0.86
   2 ?    5.0   0.0     0.016        26       8      42 ..     228     262 ..     224     264 .. 0.91
   3 ?    2.1   0.0      0.13   2.1e+02      18      41 ..     298     321 ..     294     326 .. 0.91
   4 ?   -1.5   0.0       1.7   2.8e+03      13      40 ..     387     414 ..     386     418 .. 0.85
   5 !   38.1   0.0   7.4e-13   1.2e-09       2      60 ..     853     911 ..     852     913 .. 0.96
   6 !    9.7   0.0   0.00056      0.91       2      54 ..     923     977 ..     922     981 .. 0.89
   7 ?   -0.5   0.0      0.84   1.4e+03      20      40 ..     984    1005 ..     978    1008 .. 0.78
   8 ?    4.9   0.0     0.017        28       7      41 ..    1049    1083 ..    1043    1090 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
       PPR_3  12 kldvvtYthLLtayanagnkklalevlermkkk.gikPtvvtyNailgvig 61 
                 k+ +  Y+ LL+ +a   n ++a  v + ++k   + P   t+ +++ ++ 
  CDO70351.1 196 KFPLHIYNKLLRSCAIHSNPHAAQAVYAHLEKRpDLDPDAQTFISLIATYS 246
                 666778***********************98764799*9999999999985 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.016
       PPR_3   8 rkgikldvvtYthLLtayanagnkklalevlermk 42 
                 r ++ +d  t+++L+  y   ++ + a++ +++ +
  CDO70351.1 228 RPDLDPDAQTFISLIATYSGSRDVHGAEQMFQKFR 262
                 67899*************************99865 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.13
       PPR_3  18 YthLLtayanagnkklalevlerm 41 
                 ++ +Ltay++ g   +al+ le+m
  CDO70351.1 298 WNEMLTAYFRCGQPSDALNLLEQM 321
                 6899******************99 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.7
       PPR_3  13 ldvvtYthLLtayanagnkklalevler 40 
                 +d  t+t++L a a  g   ++++ ++r
  CDO70351.1 387 PDQATWTAMLDALADEGMVADLNRLFAR 414
                 78889*********99999988888876 PP

  == domain 5  score: 38.1 bits;  conditional E-value: 7.4e-13
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvi 60 
                 + +e +  g+ +++ +Y+++++  a+a++ + al+ ++ mk   + Pt vty a++ ++
  CDO70351.1 853 LYQESQTYGVVPNIFMYNTIISKLAKARKADFALQLFQDMKARNVHPTSVTYGAVIAAC 911
                 56899999************************************************999 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00056
       PPR_3   2 ilremerk.gikldvvtYthLLtayanag.nkklalevlermkkkgikPtvvtyN 54 
                 +++em  +  +++ v  Y++++++y  ++ +++++l+  + +++ +++Pt  ty 
  CDO70351.1 923 LFQEMTSQpTFRPRVPPYNTMMQLYTHTKpDRERVLYYYNALRQAKVQPTAHTYK 977
                 6777776636899999**********999899*********************96 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.84
       PPR_3   20 hLLtay.anagnkklalevler 40  
                  +L++a   ++++++ al++++ 
  CDO70351.1  984 ALINAWgCVQKDLDQALKIFDS 1005
                  5666653589**********86 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.017
       PPR_3    7 erkgikldvvtYthLLtayanagnkklalevlerm 41  
                     g+ +  +  + L+++ya +g+ ++a e++e +
  CDO70351.1 1049 RSSGVHMTAYIANLLIKGYASVGEIERAREIFESL 1083
                  56677777788899******************976 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00084       1.4      24     120 ..     176     265 ..     152     274 .. 0.73
   2 ?   -2.4   0.0       1.5   2.5e+03      14      41 ..     343     370 ..     339     379 .. 0.72
   3 !   37.2   0.4   1.2e-12     2e-09      24     161 ..     844     974 ..     835     984 .. 0.88
   4 ?   -1.2   0.0      0.66   1.1e+03      24      39 ..     993    1008 ..     990    1039 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00084
                 HT-HHHHHHHHHHHHH.SSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHH.TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
    PPR_long  24 ekDaaaAlelydkava.egvrlaqyhynvllylcskaeaaseskknkalargfevfeamka.kgvspnEatvtalarlaaakedgdlafelvkemekag 120
                 ++  a A++l++ a+   + ++  ++yn ll  c+  +     ++    +++  v++++++    +p   t+ +l+   + ++d   a+++ ++++ a 
  CDO70351.1 176 DSHFASAFALFQTAAVnPNSKFPLHIYNKLLRSCAIHS-----NP----HAAQAVYAHLEKrPDLDPDAQTFISLIATYSGSRDVHGAEQMFQKFRDAS 265
                 555678999999877626799999******99994442.....22....23445777776646899999999999999999999999999999988665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHT-HHHHHHHHHHHHHSS CS
    PPR_long  14 lrrqldkCskekDaaaAlelydkavaeg 41 
                 ++ +++   + +D+ +Al  ++++ +++
  CDO70351.1 343 FSCTINGFCQLGDVPTALTWFERMLQQQ 370
                 5666777778889999999999988765 PP

  == domain 3  score: 37.2 bits;  conditional E-value: 1.2e-12
                 HT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH.-S CS
    PPR_long  24 ekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemeka.gv 121
                 + D ++A++ly+++ + gv  +   yn+++  ++ka++         ++ +++ f++mka++v+p   t+ a++  +   +d+  a+ l +em+++   
  CDO70351.1 844 TDDTTNAMALYQESQTYGVVPNIFMYNTIISKLAKARK---------ADFALQLFQDMKARNVHPTSVTYGAVIAACCRVGDAASAELLFQEMTSQpTF 933
                 6799**************************99988843.........56789*****************************************965379 PP

                 ---HHHHHHHHHHHHHTT.-HHHHHHHHHHHHHCT----HH CS
    PPR_long 122 sPrLRsyaPaLaayckag.dadkaleveehlkasgveleEa 161
                  Pr   y+ +++ y++++ d ++ l   + l++++v+++ +
  CDO70351.1 934 RPRVPPYNTMMQLYTHTKpDRERVLYYYNALRQAKVQPTAH 974
                 9*************987647788888888888888887755 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.66
                  HT-HHHHHHHHHHHHH CS
    PPR_long   24 ekDaaaAlelydkava 39  
                  +kD+ +Al+++d++++
  CDO70351.1  993 QKDLDQALKIFDSIAT 1008
                  68**********9876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0028       4.5       3      27 ..     297     321 ..     295     327 .. 0.90
   2 ?    1.7   0.0      0.37   6.1e+02      13      31 ..     352     370 ..     343     377 .. 0.86
   3 ?    5.1   0.2     0.032        51       3      37 ..     391     425 ..     390     427 .. 0.91
   4 !    6.9   0.2    0.0084        14       6      30 ..     487     511 ..     483     517 .. 0.88
   5 ?    1.6   0.0      0.42   6.8e+02       5      32 ..     754     781 ..     752     788 .. 0.86
   6 ?    0.3   0.1         1   1.7e+03       7      31 ..     801     825 ..     797     837 .. 0.79
   7 ?   -1.4   0.0       3.8   6.2e+03      15      32 ..     994    1010 ..     984    1014 .. 0.85
   8 ?    0.5   0.0       0.9   1.5e+03       7      33 ..    1063    1087 ..    1060    1094 .. 0.79
   9 ?    5.1   0.1     0.031        50       3      29 ..    1121    1147 ..    1119    1155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0028
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 ++ +++ a+++ G+p +A++ll+++
  CDO70351.1 297 VWNEMLTAYFRCGQPSDALNLLEQM 321
                 6888999***************986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.37
      TPR_14  13 alGdpdeAiallrralala 31 
                 +lGd  +A++ ++r+l+++
  CDO70351.1 352 QLGDVPTALTWFERMLQQQ 370
                 79999***********986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.032
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                  + a+++al+  G  ++  +l+ r+++ aP+d +a
  CDO70351.1 391 TWTAMLDALADEGMVADLNRLFARWVEVAPSDGTA 425
                 68899*************************99766 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0084
      TPR_14   6 alaeallalGdpdeAiallrralal 30 
                 +l+  ++++G  d+A++l++r+ ++
  CDO70351.1 487 RLVMQYWNRGHQDRALELAERIASR 511
                 68889****************9876 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.42
      TPR_14   5 lalaeallalGdpdeAiallrralalaP 32 
                 ++l +al ++G+ ++  +++r a +++ 
  CDO70351.1 754 ARLISALGRSGEVEKLHEVYRTASEAFG 781
                 67899999***************98875 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 1
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 ++  l+++Gd ++A a+ +r+l+++
  CDO70351.1 801 MVIGLAHAGDIEAAHAHRQRILQHG 825
                 567799**********999999975 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 3.8
      TPR_14   15 GdpdeAiallrralalaP 32  
                   d+d+A+++++ + a++P
  CDO70351.1  994 KDLDQALKIFDSI-ATHP 1010
                  699******9998.7777 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.9
      TPR_14    7 laeallalGdpdeAiallrralalaPd 33  
                  l + ++  G+ ++A+++++ +  ++P+
  CDO70351.1 1063 LIKGYASVGEIERAREIFESL--QDPE 1087
                  66778999*********9987..4555 PP

  == domain 9  score: 5.1 bits;  conditional E-value: 0.031
      TPR_14    3 allalaeallalGdpdeAiallrrala 29  
                   + a+++a+l  G+ d+A+all+r+ a
  CDO70351.1 1121 TWEAMVRAELGIGERDRAVALLQRLQA 1147
                  688999******************855 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0078        13       8      31 ..     304     325 ..     299     330 .. 0.86
   2 ?    4.6   0.0     0.025        40       9      27 ..     350     369 ..     348     381 .. 0.82
   3 ?   -0.7   0.1       1.1   1.9e+03       9      24 ..     492     507 ..     492     521 .. 0.81
   4 ?   -2.3   0.0       3.9   6.4e+03       8      24 ..     910     926 ..     909     931 .. 0.82
   5 ?   -1.4   0.0         2   3.3e+03       9      24 ..    1067    1082 ..    1065    1089 .. 0.87
   6 ?    0.0   0.0      0.69   1.1e+03      13      24 ..    1133    1144 ..    1128    1149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0078
       TPR_7   8 lysrlGdyeeAielyeqsLaltkd 31 
                 +y+r+G+ ++A+ l+eq   ++++
  CDO70351.1 304 AYFRCGQPSDALNLLEQ--MMDSS 325
                 7****************..77665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.025
       TPR_7   9 ysrlGdyeeAielyeqsL.a 27 
                 +++lGd  +A++ +e++L +
  CDO70351.1 350 FCQLGDVPTALTWFERMLqQ 369
                 799*************9944 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
       TPR_7   9 ysrlGdyeeAielyeq 24 
                 y ++G+ ++A+el e+
  CDO70351.1 492 YWNRGHQDRALELAER 507
                 78899*******9998 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.9
       TPR_7   8 lysrlGdyeeAielyeq 24 
                 +++r+Gd + A+ l+++
  CDO70351.1 910 ACCRVGDAASAELLFQE 926
                 78999999999888876 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2
       TPR_7    9 ysrlGdyeeAielyeq 24  
                  y ++G+ e+A e++e 
  CDO70351.1 1067 YASVGEIERAREIFES 1082
                  7889999***999985 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.69
       TPR_7   13 GdyeeAielyeq 24  
                  G++++A+ l+++
  CDO70351.1 1133 GERDRAVALLQR 1144
                  99********99 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.4   5.6e+03      11      27 ..     244     260 ..     243     260 .. 0.87
   2 ?    3.5   0.0     0.043        70      11      28 ..     304     321 ..     303     325 .. 0.90
   3 ?    6.5   0.4    0.0047       7.7      12      38 ..     492     518 ..     488     521 .. 0.91
   4 ?   -1.3   0.0       1.3   2.2e+03      12      26 ..    1067    1081 ..    1065    1082 .. 0.91
   5 ?   -2.1   0.0       2.5     4e+03      16      27 ..    1133    1144 ..    1130    1144 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.4
      TPR_10  11 alrqrgrydeAeallee 27 
                 +++  ++ ++Ae+++++
  CDO70351.1 244 TYSGSRDVHGAEQMFQK 260
                 78999999*****9985 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.043
      TPR_10  11 alrqrgrydeAealleea 28 
                 a+++ g+  +A++lle+ 
  CDO70351.1 304 AYFRCGQPSDALNLLEQM 321
                 89**************96 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0047
      TPR_10  12 lrqrgrydeAealleealairrrllGp 38 
                 +++rg  d+A++l+e+  +++ ++l +
  CDO70351.1 492 YWNRGHQDRALELAERIASRQLQVLQH 518
                 99******************9999986 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.3
      TPR_10   12 lrqrgrydeAealle 26  
                  + ++g+ ++A++++e
  CDO70351.1 1067 YASVGEIERAREIFE 1081
                  8899*********98 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2.5
      TPR_10   16 grydeAeallee 27  
                  g++d+A+all++
  CDO70351.1 1133 GERDRAVALLQR 1144
                  899******985 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.32   5.3e+02      10      26 .]     304     320 ..     303     320 .. 0.93
   2 ?    3.2   0.0      0.11   1.8e+02      13      26 .]     352     365 ..     352     365 .. 0.93
   3 ?    6.0   0.6     0.014        23       8      26 .]     489     507 ..     487     507 .. 0.90
   4 ?    3.5   0.4     0.089   1.4e+02      11      25 ..     805     819 ..     801     820 .. 0.86
   5 ?   -1.3   0.0       3.2   5.3e+03      14      25 ..    1070    1081 ..    1063    1082 .. 0.84
   6 ?   -0.4   0.6       1.6   2.6e+03      15      26 .]    1133    1144 ..    1121    1144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.32
       TPR_4  10 allalGdldeAraller 26 
                 a+++ G++ +A+ lle+
  CDO70351.1 304 AYFRCGQPSDALNLLEQ 320
                 899************97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
       TPR_4  13 alGdldeAraller 26 
                 +lGd ++A++++er
  CDO70351.1 352 QLGDVPTALTWFER 365
                 58**********98 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.014
       TPR_4   8 ArallalGdldeAraller 26 
                  + ++ +G+ d+A++l+er
  CDO70351.1 489 VMQYWNRGHQDRALELAER 507
                 5679*************98 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.089
       TPR_4  11 llalGdldeAralle 25 
                 l+++Gd ++A a+ +
  CDO70351.1 805 LAHAGDIEAAHAHRQ 819
                 89*********9965 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 3.2
       TPR_4   14 lGdldeAralle 25  
                   G+ ++Ar+++e
  CDO70351.1 1070 VGEIERAREIFE 1081
                  69******9987 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.6
       TPR_4   15 GdldeAraller 26  
                  G+ d+A all+r
  CDO70351.1 1133 GERDRAVALLQR 1144
                  999999999987 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.9       2.5   4.1e+03       6      67 ..      96     161 ..      93     175 .. 0.50
   2 ?    9.0   0.0    0.0011       1.8      98     129 ..     297     328 ..     287     339 .. 0.91
   3 ?   -1.9   0.1       2.5     4e+03      98     122 ..     903     927 ..     879     930 .. 0.86
   4 ?    1.0   0.1      0.32   5.3e+02      65      89 ..    1122    1146 ..    1114    1149 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT.....STTHHHHHHHHHHHHHHHHHH CS
        BTAD   6 fealvaagraalaagdpeeaaelleaAlalwrGpaladlea.....gewleaererleelrlealea 67 
                 f+a  ++  ++  a+    a +l++ +   ++ ++ + l++     +e ++ + +rl+++r +a+ +
  CDO70351.1  96 FRAPSQQRSQSVLADTSSDASQLVRSGFGTYA-TLISTLTDrdfenYEAVRRAEARLRRRRRAAISD 161
                 55555555555555666666666666666664.4555555522222344444444444444444433 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH CS
        BTAD  98 lhrqlmrAlarsGrqaeALevYerlrrlLaee 129
                  + ++++A++r+G+ ++AL+  e+++++ a e
  CDO70351.1 297 VWNEMLTAYFRCGQPSDALNLLEQMMDSSAGE 328
                 68999******************999987766 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  98 lhrqlmrAlarsGrqaeALevYerl 122
                 ++ ++++A +r+G+ a A   ++++
  CDO70351.1 903 TYGAVIAACCRVGDAASAELLFQEM 927
                 5778999999999999999888876 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.32
                  HHHHHHHHHHTT-HHHHHHHHHHHH CS
        BTAD   65 lealaeaelrlGraeealaelealv 89  
                   ea+++ael +G++++a+a l++l 
  CDO70351.1 1122 WEAMVRAELGIGERDRAVALLQRLQ 1146
                  6899999999999999999999985 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.43     7e+02      74     114 ..      89     130 ..      82     151 .. 0.77
   2 ?    6.2   0.1    0.0053       8.7      98     180 ..     190     272 ..     164     278 .. 0.88
   3 ?   -1.8   0.1       1.6   2.6e+03     108     168 ..     443     507 ..     416     510 .. 0.62
   4 ?    0.3   0.0      0.35   5.6e+02     140     179 ..     747     786 ..     745     793 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.43
     Wzy_C_2  74 dyqrleqlyltsepneaalrevtnpkvwk.drflfrayadll 114
                   ++l++++++s+++++++ ++t+ ++ + +r  f +ya+l 
  CDO70351.1  89 RVEKLSAFRAPSQQRSQSVLADTSSDASQlVRSGFGTYATLI 130
                 567899***********9999998776552557888888764 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0053
     Wzy_C_2  98 pkvwkdrflfrayadllelgllplspenlaaklalarklihlsPepavierlilslallGdedeAeqilararalfpeedakw 180
                 ++  +++f ++ y++ll+   +  +p+ ++a++a  +k   l P +++   li  + ++ d  +Aeq+ +++r +   ++ +w
  CDO70351.1 190 AVNPNSKFPLHIYNKLLRSCAIHSNPHAAQAVYAHLEKRPDLDPDAQTFISLIATYSGSRDVHGAEQMFQKFRDASRHDRVQW 272
                 455567799999*************************************************************9887777777 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
     Wzy_C_2 108 rayadllelgllplspenlaaklalarklihlsPe....pavierlilslallGdedeAeqilar 168
                 ++ adl ++  l+l +   +++l+++ + +h+       +++ +rl + ++  G +d+A+   +r
  CDO70351.1 443 DTRADLQQAKALELLDFLTEHVLPWSVDNVHYTFNreisRTLSQRLVMQYWNRGHQDRALELAER 507
                 55566666666666666666666666666666544111145667888889999999999988777 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.35
     Wzy_C_2 140 sPepavierlilslallGdedeAeqilararalfpeedak 179
                 +P+  v +rli +l  +G  ++   +++ a  +f+  + +
  CDO70351.1 747 YPRSFVAARLISALGRSGEVEKLHEVYRTASEAFGSLENA 786
                 699*******************************754433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.50
# Mc/sec: 7075.84
//
Query:       CDO70352.1  [L=454]
Description: hypothetical protein BN946_scf184613.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-48  162.8   0.0    4.7e-24   84.3   0.0    2.3  2  Thioredoxin    Thioredoxin
    3.5e-05   24.1   0.0       0.11   12.8   0.0    3.0  3  Thioredoxin_8  Thioredoxin-like
    0.00014   22.2   0.5      0.015   15.8   0.1    3.1  2  Thioredoxin_2  Thioredoxin-like domain
     0.0085   16.1   0.0       0.58   10.2   0.0    2.4  2  Thioredoxin_3  Thioredoxin domain
  ------ inclusion threshold ------
      0.025   14.0   0.0        5.7    6.2   0.0    2.7  3  OST3_OST6      OST3 / OST6 family, transporter family
      0.026   14.7   0.0       0.17   12.1   0.0    2.2  2  Thioredoxin_7  Thioredoxin-like
      0.089   12.7   0.1       0.37   10.7   0.0    1.9  2  AhpC-TSA       AhpC/TSA family


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   5.3e-25   1.3e-21       3     102 ..      35     136 ..      33     137 .. 0.95
   2 !   84.3   0.0   1.8e-27   4.7e-24       3     101 ..     185     281 ..     183     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 5.3e-25
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT....TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd....kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekek 96 
                  lvlt +nF++++a+    +++e ++p+CghC+++aP++++l ee+++     + la+v++  + dl++k +v+g+P++ l++ng+ v+ky+ ar+ e 
   CDO70352.1  35 LVLTPDNFDATIAD--GVWFIEHFSPYCGHCRRFAPTWKQLVEETEAkpdpGIHLAQVNCAVHGDLCNKNKVDGYPQMNLYRNGQFVEKYNQARTIEL 130
                  7899**********..*****************************9999999*******************************************999 PP

                  HHHHHH CS
  Thioredoxin  97 laaflk 102
                  l ++l+
   CDO70352.1 131 LTEYLN 136
                  988875 PP

  == domain 2  score: 84.3 bits;  conditional E-value: 1.8e-27
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaf 100
                  l+l +++F+++v k    ++v+F+ApwCghCk+laP++++la e+++k+ +a+v+++e++ l+++ +v+g+P l+ +    +  +y+g+r  e+l+af
   CDO70352.1 185 LSLDENTFQANVDK--GGIFVKFFAPWCGHCKKLAPTWTQLAGEMRKKLNIAEVNCEEHSALCRQEGVTGYPMLLYYGGRGTKTEYTGGRRLEQLKAF 280
                  6788999*****99..9********************************************************955555559*************998 PP

                  H CS
  Thioredoxin 101 l 101
                   
   CDO70352.1 281 S 281
                  5 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0016         4       9      42 ..      56      91 ..      50     128 .. 0.84
   2 !   12.8   0.0   4.4e-05      0.11       5      44 ..     202     239 ..     200     248 .. 0.89
   3 ?   -0.6   0.0      0.67   1.7e+03      66      90 ..     236     260 ..     227     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
                   --SSSHHHHHHHHHHHHHHHHHHH..TTSEEEEEEE CS
  Thioredoxin_8  9 gaswcppckaftpklkelyeklkk..kkkveivyvs 42
                   ++ +c +c++f p+ k+l e+ ++  ++++ +  v+
     CDO70352.1 56 FSPYCGHCRRFAPTWKQLVEETEAkpDPGIHLAQVN 91
                   6789****************9997566666666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.4e-05
                    EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S CS
  Thioredoxin_8   5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsld 44 
                    ++ f+a wc +ck+  p+ ++l  +++  kk++i  v++ 
     CDO70352.1 202 FVKFFAPWCGHCKKLAPTWTQLAGEMR--KKLNIAEVNCE 239
                    789***********************9..99999888876 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.67
                    E-TT-HHHHTT-S--TT-SEEEEE- CS
  Thioredoxin_8  66 fddkkrnklkkkynvkaiPtlvvld 90 
                    ++ +++++l+++ +v+++P+l+  +
     CDO70352.1 236 VNCEEHSALCRQEGVTGYPMLLYYG 260
                    44456899***********998655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1       0.1   2.6e+02      14      83 ..      57     109 ..      50     130 .. 0.57
   2 !   15.8   0.1   5.7e-06     0.015       5     106 ..     198     278 ..     194     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.1
  Thioredoxin_2  14 dpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt 83 
                    +p C+ C+++  + k+l + t+       kp+  ++ +++ ca              +l +k +v+g P+
     CDO70352.1  57 SPYCGHCRRFAPTWKQLVEETE------AKPDPGIHLAQVNCAVHG-----------DLCNKNKVDGYPQ 109
                    5777778888887777722222......244444555555555544...........3555555555555 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 5.7e-06
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyv 100
                    +  ++v f +p+C+ Ckkl  +  +l + +       ++++    ++++ c++           +++l r+ gv+g P ++++ g+   ++++G  
     CDO70352.1 198 KGGIFVKFFAPWCGHCKKLAPTWTQL-AGE-------MRKK--LNIAEVNCEE-----------HSALCRQEGVTGYPMLLYYGGRGTKTEYTGGR 272
                    566889999*********99977777.222.......2222..3455555555...........567*******************6667999988 PP

  Thioredoxin_2 101 paeele 106
                    + e+l+
     CDO70352.1 273 RLEQLK 278
                    877776 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.034        88       6      28 ..      56      78 ..      53      91 .. 0.88
   2 !   10.2   0.0   0.00023      0.58       6      55 ..     206     258 ..     201     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.034
                   ESSSSTTCHHHHHHHHHHCHCCT CS
  Thioredoxin_3  6 lgpgCakCpklekavkeaaaekg 28
                   ++p C +C++++  +k++++e +
     CDO70352.1 56 FSPYCGHCRRFAPTWKQLVEETE 78
                   6899**************99976 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00023
                    ESSSSTTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEEEC CS
  Thioredoxin_3   6 lgpgCakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPalvi 55 
                    + p C +C+kl+  ++++a e++ k+++ +v  ++ + +  + gV+  P l++
     CDO70352.1 206 FAPWCGHCKKLAPTWTQLAGEMRKKLNIAEVncEEHSALcRQEGVTGYPMLLY 258
                    6788*********************9999987778888889999999999844 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0089        23      46     104 ..      60     115 ..      53     141 .. 0.83
   2 ?    6.2   0.0    0.0022       5.7      46     109 ..     210     266 ..     203     296 .. 0.84
   3 ?   -1.1   0.0      0.38   9.8e+02     117     166 ..     382     430 ..     368     436 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0089
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfpp 104
                 C  Cr f+p ++++++   ++ +  +  +  a+v+ +   d+ +k ++   P+++l+  
  CDO70352.1  60 CGHCRRFAPTWKQLVEETEAK-P--DPGIHLAQVNCAVHGDLCNKNKVDGYPQMNLYRN 115
                 9*****************999.3..6899999999999999999999999999999977 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0022
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk 109
                 C  C++++p ++++a  +rk+       l  a+v+ +e + + ++ g++  P ll++   ++++
  CDO70352.1 210 CGHCKKLAPTWTQLAGEMRKK-------LNIAEVNCEEHSALCRQEGVTGYPMLLYYGGRGTKT 266
                 999999999999999999988.......889*************************99866554 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.38
   OST3_OST6 117 ydfsrggfdaealakfisertg..vkirikrppnyskiiitallvlllvlll 166
                 ++ +++++ +e+la+++++++   +++ ++ p     ++++al+vl l++ll
  CDO70352.1 382 IPYKHSENVVERLARYLNQKLVslESFVVNNPW---HTAFYALVVLGLFGLL 430
                 555555667888888888888766777777663...3334444444444443 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.65   1.7e+03      25      36 ..      56      67 ..      51      80 .. 0.82
   2 ?   12.1   0.0   6.7e-05      0.17       6      81 ..     187     259 ..     184     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.65
                   --TT-HHHHHHH CS
  Thioredoxin_7 25 gaswcftCqale 36
                    + +c++C++++
     CDO70352.1 56 FSPYCGHCRRFA 67
                   5679****9985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.7e-05
                    HHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7   6 ldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafl 81 
                    lde + +a  ++  ++v f a wc++C++l+ + ++     + +++k     v+ +e +a  ++   +g+P+++++
     CDO70352.1 187 LDENTFQANVDKGGIFVKFFAPWCGHCKKLAPT-WTQ-LAGE-MRKKLNIAEVNCEEHSALCRQEGVTGYPMLLYY 259
                    78888899999999***************9754.333.3455.777777777777777774444333667777665 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.81   2.1e+03      34      57 ..      58      79 ..      45      92 .. 0.79
   2 ?   10.7   0.0   0.00014      0.37      24      73 ..     198     244 ..     179     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.81
                STST-CCHHHHHHHHHHCHHHCCC CS
    AhpC-TSA 34 pkdwcpvCttelpalaklyeefke 57
                p   c +C++ +p  ++l+ee ++
  CDO70352.1 58 PY--CGHCRRFAPTWKQLVEETEA 79
                44..99999999999999998876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHH CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspesh 73 
                 kg  + + f++  wc +C++ +p   +l+ e++ +++++  v+++++ ++
  CDO70352.1 198 KG-GIFVKFFAP-WCGHCKKLAPTWTQLAGEMR-KKLNIAEVNCEEHSAL 244
                 56.889999999.********************.6799999999887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2994.60
//
Query:       CDO70353.1  [L=466]
Description: hypothetical protein BN946_scf184613.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-47  161.0   0.0    2.7e-47  160.1   0.0    1.5  1  SCO1-SenC        SCO1/SenC
    9.5e-25   87.6   0.1    7.6e-24   84.7   0.1    2.0  2  CGI-121          Kinase binding protein CGI-121
    2.2e-05   24.4   0.0    6.8e-05   22.8   0.0    1.7  1  AhpC-TSA         AhpC/TSA family
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.028   14.8   0.0    1.5  1  Thioredoxin_8    Thioredoxin-like
      0.019   14.9   0.0      0.038   13.9   0.0    1.5  1  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   0.0   7.5e-51   2.7e-47       1     134 []     298     434 ..     298     434 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 7.5e-51
   SCO1-SenC   1 ggpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeea.ekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiak 98 
                 ggpF+l++++ge++te+dl gk+sl++fgFt+Cpd+Cp +l +m++++d+l++e    vqp+fi+vDP+rDt+ ++++y+ +f+pr++gltG+ +++++
  CDO70353.1 298 GGPFSLTTHKGEPFTEKDLLGKWSLIYFGFTNCPDICPEELDKMSAAVDKLDAEYgPIVQPIFISVDPARDTVPQVARYVREFHPRLVGLTGDYATLKA 396
                 68***************************************************96377***************************************** PP

   SCO1-SenC  99 aakefrvyvekvedees..dytvdHsssvyLvdpdgrv 134
                  +k++rvy+++ ++ +   dy+vdHs ++y++dp+g++
  CDO70353.1 397 TCKAYRVYFSTPPNARAedDYLVDHSIFFYFMDPNGQF 434
                 ********99998887778*****************97 PP

>> CGI-121  Kinase binding protein CGI-121
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.1   2.1e-27   7.6e-24       1      72 [.      21     103 ..      21     105 .. 0.96
   2 ?    2.0   0.0     0.058   2.1e+02     134     162 .]     103     137 ..     102     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.1e-27
                 EES-S-HHHHHHTH..C...........CHCTT-EEE-GGG---HHHHHHHHHHHHHHHHHS---SSSHHHHHHHHHSSSS-H CS
     CGI-121   1 FknVknaaelrkql..lsk.........raeldfafldaslilskehllsAvlrallaaargklktktlhsEilfsLspnnnI 72 
                 F+ V naa+lr+++  +s+         r +++faf+da+li+s+ hl++A+++a+la+a+g+l+tkt+hsEil++L+p+nn 
  CDO70353.1  21 FTGVANAAALRSRIvrASQiqgpdgdaeRDAVNFAFIDARLICSRLHLQTAIYQAILAQAQGTLRTKTVHSEILWALNPTNNY 103
                 999***********76666*********99***************************************************95 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.058
                 HTT--......TT---.SSHHH.HHHHHHHHHHTX CS
     CGI-121 134 iYklne....leeeke.eevke.ledlvvsavalk 162
                 +Ykln     +e +k+ ++++  ++++v+s+va+k
  CDO70353.1 103 YYKLNGepalKELAKDpARERLfVDEIVTSSVAMK 137
                 89***9899833444424444479**********8 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.9e-08   6.8e-05       8      98 ..     301     438 ..     299     452 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.9e-08
                 -EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCHHHCCCT...TEEEEEEESSSCHHHHHHHHH-H..................... CS
    AhpC-TSA   8 felknadgetvslsdykgkpvvlffypkdwcp.vCttelpalaklyeefker...gvevigvsvdspeshkkfiekes..................... 81 
                 f+l++++ge+++ +d+ gk+ +++f  + +cp  C++el ++++++++++++    v+ i +svd+  +   +++++                      
  CDO70353.1 301 FSLTTHKGEPFTEKDLLGKWSLIYFGFT-NCPdICPEELDKMSAAVDKLDAEygpIVQPIFISVDPARDTVPQVARYVrefhprlvgltgdyatlkatc 398
                 99***********************999.78758****************8743347889999999885544444444333333333333333333333 PP

                 ........................SSEEEE-TTSHHHHHT CS
    AhpC-TSA  82 .......................lnfpllsDeegkvakay 98 
                                          f ++ D++g++++a+
  CDO70353.1 399 kayrvyfstppnaraeddylvdhSIFFYFMDPNGQFVDAF 438
                 3333555555555555555555555555555555555555 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   7.7e-06     0.028       1      49 [.     318     369 ..     318     433 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.7e-06
                    .SEEEEEE--SSSHH.HHHHHHHHHHHHHHHHH..TTSEEEEEEE-SS-HHH CS
  Thioredoxin_8   1 gkvvlLyfgaswcpp.ckaftpklkelyeklkk..kkkveivyvsldkkeee 49 
                    gk+ l+yfg ++cp+ c + + k+++  +kl +  ++ v+ +++s+d  ++ 
     CDO70353.1 318 GKWSLIYFGFTNCPDiCPEELDKMSAAVDKLDAeyGPIVQPIFISVDPARDT 369
                    6999***********9****************889************65543 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.038      21      43 .]     256     278 ..     254     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                      XXXXXXXXXXXXXXXXXXXXXX. CS
  Gram_pos_anchor  21 taaGllallggllLlvkrRKkek 43 
                      taa+l++l+g +l+++ r+ kek
       CDO70353.1 256 TAAALFVLTGIGLFFYFRKEKEK 278
                      89************999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3108.85
//
Query:       CDO70354.1  [L=68]
Description: hypothetical protein BN946_scf184613.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-21   74.6   7.8    1.4e-19   69.6   7.8    2.0  1  NDUF_B7   NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)


Domain annotation for each model (and alignments):
>> NDUF_B7  NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   7.8   7.7e-24   1.4e-19       1      63 []       6      59 ..       6      59 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 7.7e-24
     NDUF_B7  1 vatqeemeaaklplkeRDyCAhlLiplnkCrrenfplpwkCehekhayekCqyedyvrRmkel 63
                +a+q+e++aak+pl++RD+C++         +e+++lpw+Ce+e+hayekCqyedy+rRmkel
  CDO70354.1  6 TASQAELKAAKVPLGWRDQCSA---------KEKMYLPWECENERHAYEKCQYEDYMRRMKEL 59
                59*******************7.........7*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 487.64
//
Query:       CDO70355.1  [L=355]
Description: hypothetical protein BN946_scf184613.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-23   84.0   1.3    1.4e-23   83.5   0.0    1.9  2  VWA_2     von Willebrand factor type A domain
      7e-12   44.4  14.1    0.00024   20.8   0.1    3.6  3  UIM       Ubiquitin interaction motif
    4.6e-05   23.3   0.1    0.00013   21.9   0.0    1.7  2  Ssl1      Ssl1-like
  ------ inclusion threshold ------
        1.5    7.8   7.4        1.9    7.4   7.4    1.1  1  DUF4698   Domain of unknown function (DUF4698)
        1.8    8.7   4.9        1.5    8.9   3.5    1.6  1  DUF4719   Domain of unknown function (DUF4719)
        7.5    7.1   9.5         14    6.2   9.5    1.4  1  HNF-1_N   Hepatocyte nuclear factor 1 (HNF-1), N terminus


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   4.8e-27   1.4e-23       1     104 [.       6     116 ..       6     119 .. 0.92
   2 ?   -4.0   0.3         6   1.8e+04      85      93 ..     241     249 ..     233     260 .. 0.47

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 4.8e-27
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallk....slpgdrvglvtfsd.gpevlipltkdkakilnalrnleak.gggtnlaaaLqlarkalkkrr 93 
                 +++++D+S++mrngdy+p+r++a+ dav++l++    s+p+++vg +t+++ gpevl++ tkd ++il al++ ++k gg  ++ +a+  a+ alk+r+
  CDO70355.1   6 TLIIIDNSEYMRNGDYHPNRFQAQSDAVTTLFQtkvdSNPENTVGFMTMAGkGPEVLVTHTKDLGQILGALHAAQDKiGGVADIPTAIAVAQLALKHRS 104
                 689******************************7776669***********88*********************************************9 PP

       VWA_2  94 .kgekrvivlit 104
                  k+ +++iv++ 
  CDO70355.1 105 nKNLRQRIVVFV 116
                 966666666664 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
       VWA_2  85 arkalkkrr 93 
                  +++ ++r+
  CDO70355.1 241 SMEEEQARQ 249
                 333333333 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.4   1.4e-05      0.04       3      16 ..     231     244 ..     231     244 .. 0.94
   2 !   16.1   2.2   2.5e-06    0.0073       1      15 [.     306     320 ..     306     321 .. 0.90
   3 !   20.8   0.1   8.1e-08   0.00024       1      15 [.     334     348 ..     334     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
         UIM   3 dedLqrAlalSlqE 16 
                 d +L++Al++S++E
  CDO70355.1 231 DPELAMALRMSMEE 244
                 789**********9 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.5e-06
         UIM   1 dEdedLqrAlalSlq 15 
                 dE+++Lq+Ala+S q
  CDO70355.1 306 DEEAMLQKALAMSHQ 320
                 8************65 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 8.1e-08
         UIM   1 dEdedLqrAlalSlq 15 
                 +E+++++rA+++S++
  CDO70355.1 334 SEEDEIKRAIEMSMK 348
                 7*************8 PP

>> Ssl1  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.3e-08   0.00013       1     137 [.       9     148 ..       9     175 .. 0.86
   2 ?   -1.9   0.1      0.84   2.5e+03      73      94 ..     302     323 ..     295     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.3e-08
                 EEE-SGGGGSSSSSS-HHHHHHHHHHHHHHHHHHHSTT-EEEEEEEETTEEEEEEEEES-HHHHHHHHHHHTTS---S---HHHHHHHHHHHHSSS-TT CS
        Ssl1   1 vlDlsrameekdlkpsrlavviklleefveeffdqnPisqlgliavkdkkaekltelsGnprkhikaLkslreveakgepsLqnaLelalasLkkvpsh 99 
                 ++D s+ m + d +p+r++ +  ++++  +   d nP   +g +++  k  e l + + +  + + aL++++  ++ g + +  a+ +a+  Lk+ +  
  CDO70355.1   9 IIDNSEYMRNGDYHPNRFQAQSDAVTTLFQTKVDSNPENTVGFMTMAGKGPEVLVTHTKDLGQILGALHAAQ-DKIGGVADIPTAIAVAQLALKHRSNK 106
                 69**************************************************999999999999****9998.7899999***************9998 PP

                 SEEE..EEEEE-SS-..---SS-HHHHHHHHHHTT-EEEEEE CS
        Ssl1 100 asre..vliifssls..tcDPgdiyetidelkkekirvsvig 137
                   r   v+ + s l    +D   ++++ ++lkk+++ +  i+
  CDO70355.1 107 NLRQriVVFVGSPLEgqGADEKYMVRLAKKLKKNNVAIDFIA 148
                 877621333444554224677778888899999988887776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.84
                 TS---S---HHHHHHHHHHHHS CS
        Ssl1  73 eveakgepsLqnaLelalasLk 94 
                 e e   e+ Lq aL ++++ ++
  CDO70355.1 302 EDEEDEEAMLQKALAMSHQDVE 323
                 556677889999*999998864 PP

>> DUF4698  Domain of unknown function (DUF4698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.4   0.00064       1.9     187     279 ..     246     339 ..     233     355 .] 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00064
     DUF4698 187 kgsklslsrvsggsspqssvvSlnpgsdevalssaltqvtsskeiedne..ssstkedeellsikLQklleivredvrrtveeeekelqkkaesi 279
                 ++++ + +++s+++s  ++ +  +p     ++ sa ++ ts+  +       s   edee  +  LQk l + ++dv+    +++ e +++ + i
  CDO70355.1 246 QARQAAAAQASAAQSSSGAASTPAPAAAAAPAASAASSSTSAPPASAAPasASAAAEDEEDEEAMLQKALAMSHQDVEMAD-HQDGEEESEEDEI 339
                 44555567888888888888888886666666777677777755555444344467777778899***********98654.3333333333333 PP

>> DUF4719  Domain of unknown function (DUF4719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.5    0.0005       1.5      66     113 ..     277     324 ..     265     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0005
     DUF4719  66 rrqarpgqrpgppggagplggarrpdddddspallrdeaaatsqdsll 113
                    a ++  ++pp++a+p++ +   +d++d+ a+l++  a + qd  +
  CDO70355.1 277 AASAASSSTSAPPASAAPASASAAAEDEEDEEAMLQKALAMSHQDVEM 324
                 55666778899*************************887888888654 PP

>> HNF-1_N  Hepatocyte nuclear factor 1 (HNF-1), N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.5    0.0047        14      31     137 ..     244     350 ..     232     354 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0047
     HNF-1_N  31 rehgekleklrlaegeeadskg.gittlangagkssknassstt...ksklsqtqrledessspgnsydtspilsasqrsfsfekaeeledldieeaae 125
                 +e+  +  ++ +a  ++++s + ++++ a++a+++++ assst+   +s+++   + + e++++ + +  ++ l+ s++  ++++ ++ e+ + e+  e
  CDO70355.1 244 EEQARQ-AAAAQASAAQSSSGAaSTPAPAAAAAPAASAASSSTSappASAAPASASAAAEDEEDEEAM-LQKALAMSHQDVEMADHQDGEEESEED--E 338
                 333222.2222332333323332555555555565555666666444444444334444444444444.555555566666666666655655444..7 PP

     HNF-1_N 126 qrakveellred 137
                 +++++e  ++ +
  CDO70355.1 339 IKRAIEMSMKGN 350
                 888888887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 2313.60
//
Query:       CDO70356.1  [L=373]
Description: hypothetical protein BN946_scf184613.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-141  472.2   0.0   6.4e-141  469.7   0.0    1.8  1  Actin            Actin
  ------ inclusion threshold ------
       0.14   10.7   0.0       0.22   10.0   0.0    1.3  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  469.7   0.0  7.1e-145  6.4e-141       2     407 .]       3     373 .]       2     373 .] 0.98

  Alignments for each domain:
  == domain 1  score: 469.7 bits;  conditional E-value: 7.1e-145
       Actin   2 devsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.....klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdpeeh 95 
                 dev a+V+DnGs++++aG   +daP+av+ps+vg+pr++ v+      + yvgdea++kr+ l++++p+e+G+v++wd++e++w+h++++el+v peeh
  CDO70356.1   3 DEVAALVIDNGSGMCKAG--CDDAPRAVFPSIVGRPRHQGVMVgmgqkDSYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 99 
                 89***************9..6*******************9999***99************************************************** PP

       Actin  96 pllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvev 194
                 p+llte+plnp+++rek+++i+fE+f+ pa+y+a +avls++asg++tg+v+DsG++vt+ vp+++G++L +ai r dl+G++Lte l + l ++    
  CDO70356.1 100 PILLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFSLPHAILRIDLAGRDLTEFLIKNLMER---- 194
                 ****************************************************************************************9999997.... PP

       Actin 195 tprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg..deeksssspeksYeLPDgseiklgeeRfkvpEiLFdpsligs 291
                                           ++ ++t++e+e++++iKe++c+v+ d+e+  +++++ss  eksYeLPDg++i++g+eRf++pE+LF+p  +g 
  CDO70356.1 195 --------------------------GYPFHTTAEREIVRDIKEKLCYVALDFEQelQTAAHSSALEKSYELPDGQVITIGNERFRAPEALFQPAFLGL 267
                 ..........................9***************************977777777************************************ PP

       Actin 292 esaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvs 390
                 e a         gi+e ++++i +cd d+r++L+ niv++GG++++pg+ +R++kel++la++++kvki+ap+ erkys+WiGGSiLAsl+tfq+lw s
  CDO70356.1 268 EAA---------GIHETTYNSIYKCDLDIRRDLYGNIVLSGGTTMFPGIADRMQKELTALAPSSMKVKIVAPP-ERKYSVWIGGSILASLSTFQNLWCS 356
                 999.........*************************************************************.************************* PP

       Actin 391 kqEYeEqGssvverkck 407
                 kqEY+E+G+ +v+rkc+
  CDO70356.1 357 KQEYDESGPGIVHRKCF 373
                 ****************6 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.5e-05      0.22      97     165 ..     126     198 ..     117     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.5e-05
  Methyltransf_29  97 gadkYidklaelipliaaggkvrtvlDvGCgvas....fgayllsrdvltlslapkDeheaqvqfaLeRgvpa 165
                      +a ++   ++ +++l a+g ++ +vlD G gv+     + ++ l + +l + la +D  e  ++  +eRg p 
       CDO70356.1 126 NAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHtvpiYEGFSLPHAILRIDLAGRDLTEFLIKNLMERGYPF 198
                      567777889********************998753444899*****************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2478.72
//
Query:       CDO70357.1  [L=418]
Description: Carbohydrate Esterase Family 15 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3003.21
//
Query:       CDO70358.1  [L=451]
Description: Carbohydrate-Binding Module Family 1 / Carbohydrate Esterase Family 15 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   56.5  10.3    4.6e-15   55.3  10.3    1.7  1  CBM_1     Fungal cellulose binding domain


Domain annotation for each model (and alignments):
>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3  10.3   2.5e-19   4.6e-15       1      29 []      25      53 ..      25      53 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 2.5e-19
       CBM_1  1 lwgQCGGigWtGpTtCvsgatCtyqNeyY 29
                +wgQCGGigWtGpTtCvsg++Ct+ N+yY
  CDO70358.1 25 EWGQCGGIGWTGPTTCVSGTVCTVINPYY 53
                6**************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3072.68
//
Query:       CDO70359.1  [L=440]
Description: hypothetical protein BN946_scf184856.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.031   14.0   0.0      0.046   13.5   0.0    1.3  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.6e-06     0.046     236     290 ..     365     427 ..     333     428 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-06
                   HHHHH-GGGEEEE--..BTSTTSTSCTTHHHHCHHHHH......SSHHHHHHHHTHHHHHHCT CS
  Amidohydro_2 236 lieavgpdrilfGsD..yPhptleaepealalldlval......lsdeerekilggNAarlyg 290
                    +ea+g  rilfGs    P ++++   +a ++++l  +        +++ ++++ +NA ++yg
    CDO70359.1 365 TVEAFGFQRILFGSSpaAPLTASTPASSAADWFELARAsfaelgVEQDAIDAVFAENAKAVYG 427
                   689***********755777777777777777777666999*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3246.56
//
Query:       CDO70360.1  [L=98]
Description: hypothetical protein BN946_scf184856.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.26    9.5  11.3       0.28    9.4  11.3    1.0  1  Nop14           Nop14-like family
        4.7    6.3   5.8        5.5    6.1   5.8    1.1  1  TRAP_alpha      Translocon-associated protein (TRAP), alpha s
        9.9    5.4  14.4         13    5.0  14.4    1.1  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  11.3   4.6e-05      0.28     345     394 ..      30      76 ..       8      95 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 4.6e-05
       Nop14 345 eeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeee.eeeeded 394
                 e ++++++ + ++dd++ve  +      +++dee+eedee+ee ee+ d+ 
  CDO70360.1  30 EAQGSDENINGDDDDNEVEGVKY----ANGKDEEDEEDEEDEEdEEDLDSG 76 
                 12233333333344433333333....333443433333333312223333 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.8   0.00092       5.5      25      71 ..      29      75 ..      17      85 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00092
  TRAP_alpha 25 aaaaaeedevddelvdveaedeeveeeeeeeeeeeeeeeedeeelka 71
                ++a+  +++++ +  d e+e  +  + ++ee+ee ee+eedee+l++
  CDO70360.1 29 EEAQGSDENINGDDDDNEVEGVKYANGKDEEDEEDEEDEEDEEDLDS 75
                33444444444443555555555555444445555555556655555 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  14.4    0.0022        13     265     303 ..      32      71 ..      17      77 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0022
       NOA36 265 sgddeddegdeddddddd..eedddeeeddedeeeeeeees 303
                  g+de+ +gd+dd+ + +  +  + ++e+de++ee+ee+e+
  CDO70360.1  32 QGSDENINGDDDDN-EVEgvKYANGKDEEDEEDEEDEEDEE 71 
                 22222222332222.22222233333333322222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 707.84
//
Query:       CDO70361.1  [L=124]
Description: hypothetical protein BN946_scf184856.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-07   28.9   0.0    9.6e-07   28.7   0.0    1.3  1  DUF4939   Domain of unknown function (DUF4939)


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.3e-11   9.6e-07      26      83 ..      62     120 ..      28     124 .] 0.88

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.3e-11
     DUF4939  26 ipfpetfd.GdtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyi 83 
                 +  p++fd  d  +l  f  q    +  + +tf++d  kvt+ i+ l+G al w  py+
  CDO70361.1  62 VREPNQFDrSDPTKLHLFFTQLEPVLKTQPRTFDTDEKKVTYAISYLKGMALTWFEPYL 120
                 5568999845889*********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 934.11
//
Query:       CDO70362.1  [L=220]
Description: hypothetical protein BN946_scf184999.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00059   19.6   1.1        1.6    8.6   0.2    2.9  3  HSBP1         Heat shock factor binding protein 1
     0.0025   17.9   1.4     0.0097   16.1   1.1    2.0  2  DUF5446       Family of unknown function (DUF5446)
     0.0025   18.0   1.3      0.062   13.6   0.2    2.6  2  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.044   14.4   0.5       0.65   10.7   0.0    2.4  2  AKNA          AT-hook-containing transcription factor
      0.072   13.6   0.0       0.16   12.5   0.0    1.5  1  DUF16         Protein of unknown function DUF16
      0.078   12.8   0.8        1.2    9.0   0.0    2.1  2  PIN_8         PIN like domain
        0.1   12.9   0.1       0.15   12.3   0.1    1.3  1  IL4           Interleukin 4
       0.14   11.4   2.5       0.22   10.8   2.5    1.3  1  DUF3450       Protein of unknown function (DUF3450)
        1.1    9.5   4.2        5.7    7.2   0.1    2.6  3  XhlA          Haemolysin XhlA


Domain annotation for each model (and alignments):
>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   3.7e+03      24      32 ..      90      98 ..      89     100 .. 0.70
   2 !    8.4   0.0   0.00093       1.8      25      41 ..     134     150 ..     131     151 .. 0.90
   3 !    8.6   0.2   0.00081       1.6      31      47 ..     178     194 ..     176     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
       HSBP1 24 qilsriDdM 32
                ++l+++D++
  CDO70362.1 90 KVLNKLDEL 98
                567888875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00093
       HSBP1  25 ilsriDdMssriDdLEk 41 
                 +ls+i ++++r+D LE+
  CDO70362.1 134 LLSKIKELGQRVDVLEE 150
                 89**************7 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00081
       HSBP1  31 dMssriDdLEksiadlm 47 
                  M++r+D++E+ i +l 
  CDO70362.1 178 SMERRLDSIEREIRSLN 194
                 5************9886 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.88   1.8e+03      26      43 ..     139     156 ..     135     168 .. 0.64
   2 !   16.1   1.1   4.9e-06    0.0097      39      69 ..     175     205 ..     149     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.88
     DUF5446  26 kelseavneteaekeeke 43 
                 kel+++v  +e   +  e
  CDO70362.1 139 KELGQRVDVLEEHDRTRE 156
                 566666666555544444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.9e-06
     DUF5446  39 keekeeerldllekElkdLvlCigklekaee 69 
                   +  e rld +e+E+  L  C++  e++e+
  CDO70362.1 175 GFSSMERRLDSIEREIRSLNECMNTAEVGEQ 205
                 44789********************999986 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.072   1.4e+02      41      65 ..     136     160 ..     119     163 .. 0.87
   2 !   13.6   0.2   3.1e-05     0.062      10      54 ..     176     218 ..     169     220 .] 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.072
  ABC_tran_CTD  41 eklaelsaeleeleaeLeelyerWe 65 
                    k++el ++ + le+   + +e+W 
    CDO70362.1 136 SKIKELGQRVDVLEEHDRTREEEWA 160
                   5899999999999999999999996 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.1e-05
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleele 54 
                   +  +e++++++E ei +l++ ++ +e+   +++ +el   +e l+
    CDO70362.1 176 FSSMERRLDSIEREIRSLNECMNTAEVG--EQTQQELYDMYESLQ 218
                   6789**********************65..556777777777776 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.65      34      61 ..     125     151 ..     108     163 .. 0.78
   2 ?    1.7   0.2      0.21   4.1e+02      21      67 ..     166     208 ..     151     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
        AKNA  34 qpgkfdpsreleaeIyqlgqrleeLkdq 61 
                  p k +p r l  +I  lgqr++ L ++
  CDO70362.1 125 DP-KPSPTRVLLSKIKELGQRVDVLEEH 151
                 33.45999*****************998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
        AKNA  21 setlaqklssskgqpgkfdpsreleaeIyqlgqrleeLkdqtdqlkq 67 
                  e la++ s+  ++++++d+   +e eI  l+++++   +  +q++q
  CDO70362.1 166 VEMLARQHSGFSSMERRLDS---IEREIRSLNECMNT-AEVGEQTQQ 208
                 46778888888789999887...99999888887652.344444444 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.8e-05      0.16      52     103 ..     133     187 ..     118     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHH...HHHHHHHHHHHC CS
       DUF16  52 kleqkvekqgekikelkveqkaqgeelnkvdetlelilet...LqkinkRlDsie 103
                 +l  k++++g++++ l+++  +++ee  +++  +e++++      +++ RlDsie
  CDO70362.1 133 VLLSKIKELGQRVDVLEEHDRTREEEWAAMKGRVEMLARQhsgFSSMERRLDSIE 187
                 5778999********************9999999999865333889********9 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00058       1.2     114     153 ..      76     114 ..      44     120 .. 0.73
   2 ?    2.4   0.2     0.062   1.2e+02     100     151 ..     156     207 ..     133     218 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00058
       PIN_8 114 leelkksskadkeedpilkkleellegkigealskeelee 153
                  + + ++ +++    ++l+kl+el+eg+ g++++kee++e
  CDO70362.1  76 PSPIAEQEPENP-YTKVLNKLDELFEGRYGSSINKEEWSE 114
                 444444444443.589**********************76 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.062
       PIN_8 100 kkqleelkeelkaeleelkksskadkeedpilkkleellegkigealskeel 151
                 +++ +++k ++++ ++++++ s+ +++ d+i+++++ l e   ++++ +++ 
  CDO70362.1 156 EEEWAAMKGRVEMLARQHSGFSSMERRLDSIEREIRSLNECMNTAEVGEQTQ 207
                 3444445555544444444444555555555555555543333333333333 PP

>> IL4  Interleukin 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.8e-05      0.15      29     102 ..     145     219 ..     136     220 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
         IL4  29 advfaapkntteketlCraatvLrqvykkhekeclkklLkkldRnlsslan.ltkCpvneakkttlkDflerLKt 102
                 +dv+++   t e+e      +v   + ++   + +++ L  ++R+++sl++ +++  v e+++++l D+ e+L++
  CDO70362.1 145 VDVLEEHDRTREEEWAAMKGRVEMLARQHSGFSSMERRLDSIEREIRSLNEcMNTAEVGEQTQQELYDMYESLQS 219
                 689999999999998887777766666666666999*************98356789**************9975 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.5   0.00011      0.22      33     110 ..     139     218 ..     132     220 .] 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     DUF3450  33 aqsqkkidklddekqellaeyralkeeleslevyne...qlerlvasqeqeiasleeqieeieeierelvpllekmidrLe 110
                 ++  +++d l++  ++ ++e  a+k ++e l+ + +    +er ++s e+ei sl+e ++ +e  e + ++ l++m ++L+
  CDO70362.1 139 KELGQRVDVLEEHDRTREEEWAAMKGRVEMLARQHSgfsSMERRLDSIEREIRSLNECMNTAEVGE-QTQQELYDMYESLQ 218
                 56679999**********************9999853337999**************999987665.57778899999997 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       5.8   1.2e+04      24      34 ..      58      68 ..      55      70 .. 0.71
   2 ?    7.2   0.1    0.0029       5.7      11      36 ..     136     161 ..     134     172 .. 0.83
   3 ?    3.6   0.0     0.039        77       9      31 ..     179     201 ..     176     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.8
        XhlA 24 eekaaeaeeki 34
                +++ a+a+++i
  CDO70362.1 58 KRDDARAKQRI 68
                67888888877 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0029
        XhlA  11 tkldnleervdkleekaaeaeekikn 36 
                 +k+++l++rvd lee+ ++ ee+   
  CDO70362.1 136 SKIKELGQRVDVLEEHDRTREEEWAA 161
                 599*************9999987655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.039
        XhlA   9 ietkldnleervdkleekaaeae 31 
                 +e++ld++e ++  l+e +++ae
  CDO70362.1 179 MERRLDSIEREIRSLNECMNTAE 201
                 78888888888777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1586.52
//
Query:       CDO70363.1  [L=386]
Description: hypothetical protein BN946_scf184999.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2673.20
//
Query:       CDO70364.1  [L=410]
Description: hypothetical protein BN946_scf184999.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0018   18.1   0.0     0.0081   16.0   0.0    2.2  1  F-box-like  F-box-like
     0.0091   15.9   0.6      0.027   14.4   0.1    2.1  2  F-box       F-box domain
  ------ inclusion threshold ------
      0.047   13.6   0.1       0.17   11.8   0.1    1.9  2  F-box_4     F-box
       0.17   12.2   0.5        0.4   11.0   0.5    1.6  1  DIMCO_N     Dinitrogenase iron-molybdenum cofactor, N-termina


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06    0.0081       3      35 ..       5      38 ..       3      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
  F-box-like  3 rLPdEiLlqIFsyLpps.dLlrlalVCrrWrrva 35
                +LP ++L  I s L+++ + l+++l+Cr  r +a
  CDO70364.1  5 NLPFDVLHAIISSLDDKgTALAVSLTCRTLRGLA 38
                8*************99989***********9998 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1     6e-06     0.027       5      34 ..       5      35 ..       1      45 [. 0.93
   2 ?   -3.6   0.0       2.6   1.2e+04      10      26 ..      96     112 ..      91     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-06
                HS-HHHHHHHHHTS-HHH.HHHHCTT-HHHH CS
       F-box  5 rLPsevlrhILerLplsd.llalrrVSkgwr 34
                +LP +vl+ I+++L+ +   la +++++++r
  CDO70364.1  5 NLPFDVLHAIISSLDDKGtALAVSLTCRTLR 35
                8*****************************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
                 HHHHHHHTS-HHHHHHH CS
       F-box  10 vlrhILerLplsdllal 26 
                 +l +IL++    + lal
  CDO70364.1  96 CLVDILKHATRLEWLAL 112
                 57788888666666665 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.8e-05      0.17       7      43 ..       5      42 ..       2      63 .. 0.85
   2 ?   -2.4   0.0      0.91   4.1e+03      69      88 ..     270     289 ..     265     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
     F-box_4  7 sLPlevlqhiaslLDsf.sLsqLslvskllrevcssll 43
                +LP++vl+ i+s LD+  + + +sl++++lr ++ + l
  CDO70364.1  5 NLPFDVLHAIISSLDDKgTALAVSLTCRTLRGLAIRRL 42
                7*************976256789********9987655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.91
     F-box_4  69 kkvwefstlfskvksWkfed 88 
                 ++v ++ ++++++++Wk+ d
  CDO70364.1 270 RRVRALNKQSQEIRTWKYLD 289
                 55667788888899998765 PP

>> DIMCO_N  Dinitrogenase iron-molybdenum cofactor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   8.8e-05       0.4       4      45 ..      22      63 ..      20     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.8e-05
     DIMCO_N  4 evALRiALAaraLpgvdvaqLlevLqerlgeplteekLaklt 45
                 +AL + L  r+L g+ +++Ll++L   l ++ t ++L+k+ 
  CDO70364.1 22 GTALAVSLTCRTLRGLAIRRLLSILPINLKDQETVHALHKFL 63
                58*******************************999999863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2548.72
//
Query:       CDO70365.1  [L=512]
Description: hypothetical protein BN946_scf184999.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-43  146.8   0.0      1e-42  146.2   0.0    1.3  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.0   5.7e-47     1e-42       2     176 .]     233     426 ..     232     426 .. 0.91

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 5.7e-47
      DUF155   2 fiFknGsvVfwgldeeeeknflnkllkflneeselpreeeqeteeleyvydeq..................sessrikgdvivlkskslleklaiShal 82 
                 ++F++G+vVf+g+ e++e  ++++++++     + p+++++  e ++y+  +                      +ri +d ++ k++s+l +l+++hal
  CDO70365.1 233 IFFEYGVVVFYGFREDQELGIIEDVEEAGILTRKIPHDDWE-VEACHYTVISFhsslfwlaltfllkhdpnIAFPRIFNDFFTFKTHSHLLQLSVAHAL 330
                 58*************************99998777888777.8*****9987656666666666666555534445*********************** PP

      DUF155  83 aqSvkLdvlEesldelle..stekipkelakkgklklsrkellkktgellslrinlnlkselldtPdffWeepeleslyeavseyleikeRikiLn 176
                 aqS+ L+++E++  ++l+  +t++ip++la++g l lsrk+ lk+tg+l++lr ++nl+s++ld+P++fW+e++l+ ly+av++y+ei++R+++Ln
  CDO70365.1 331 AQSTLLAHYETLAHRILSspRTRSIPAQLASTGVLALSRKDALKLTGRLFTLRRDVNLVSNVLDVPELFWDEASLKALYDAVRDYMEIGPRVQVLN 426
                 ******************77899**********889***********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3378.81
//
Query:       CDO70366.1  [L=777]
Description: hypothetical protein BN946_scf184999.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-37  129.4   0.2    4.1e-18   65.8   0.0    2.3  2  DEAD        DEAD/DEAH box helicase
    7.9e-27   93.8   0.0    1.1e-25   90.2   0.0    2.4  2  Helicase_C  Helicase conserved C-terminal domain
     0.0017   18.4   0.0     0.0039   17.2   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   6.8e-22   4.1e-18       1      72 [.     155     235 ..     155     259 .. 0.91
   2 !   61.4   0.0   1.5e-20   9.1e-17      76     175 ..     287     412 ..     275     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 6.8e-22
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkk 72 
                 t+iQa+++pl+l+g+dv++ aeTGsGKTla+ +p+l+ ++++         k ++  +ali++PtreLa q+  +l+ ++ 
  CDO70366.1 155 TPIQAQTLPLALKGKDVVGVAETGSGKTLAYGLPILHYLLTEafsrpipssKIRRPVRALILAPTRELALQVSLHLNACLT 235
                 89**********************************9999889******9999999***************9988877766 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 1.5e-20
                 SEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.HCTSSH..CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
        DEAD  76 lrvlliiggvaardqlskldngvdivvgtpgrlddll.stgkln..lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq............ 159
                 ++v +i+gg +a++q++ l++gvd++v+tpgrl d++ ++ +l   ++++rflVlDEadr+ + g   ++++il+ + ++++d+  +            
  CDO70366.1 287 VSVAAIVGGMSAQKQRRILSRGVDVLVATPGRLWDIIqEDDELAtqIENLRFLVLDEADRMIETGHFAELDNILRLTLRKSDDEVIEpenalgvedger 385
                 56889**************999*************99734444334****************************9997776665533699********* PP

                 ...........SEEEEEESSBSHHHHH CS
                 ...........xxxxxxxxxxxxxxxx RF
        DEAD 160 ...........rqvivlSATlpkdvkk 175
                             q+ v+SATl+kd++k
  CDO70366.1 386 edskegvrqgeMQTFVFSATLSKDLQK 412
                 *******999999*********99886 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.12   7.2e+02      41      73 ..     287     315 ..     276     316 .. 0.86
   2 !   90.2   0.0   1.8e-29   1.1e-25       1     110 [.     472     579 ..     472     580 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
                 STEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  41 ikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ++va++ g ++++++++il++     +dvL+at
  CDO70366.1 287 VSVAAIVGGMSAQKQRRILSRG----VDVLVAT 315
                 57899999***********998....7788887 PP

  == domain 2  score: 90.2 bits;  conditional E-value: 1.8e-29
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHH..HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvkll..lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 dk ++l+++l   +  g++l+f+ +id +   +ll   e  +i++ +lh++l+q++r++ l++f++    vL+atd+a+rG+dip v++V+++++pr+ 
  CDO70366.1 472 DKDAYLYYFL--LRYPGRTLVFLSSIDGIR--RLLplMELLDIHAYPLHSQLEQRQRLKNLDRFKSTPNAVLLATDIAARGLDIPAVDHVVHYQAPRTA 566
                 6888999996..699************886..4442223339**********************998888***************************** PP

                 HHHHHHHTTSSST CS
  Helicase_C  98 tsyiqriGRtgRa 110
                 + y++r GRt+Ra
  CDO70366.1 567 DAYVHRNGRTARA 579
                 ************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.5e-07    0.0039      30     147 ..     174     350 ..     152     366 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.5e-07
                 EESTTSTHHHHH.HHHHHHH-S................-EEEEESSHHHHHHHHHHG........................GGGTGG....GEEEESSS CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee...........kflflvprkslleqtleef........................kkflseaykeigkkvsgd 92 
                 +++TG+GKTl + + +  +ll+++  +           ++l+l+p+++l  q   ++                        k            ++s+d
  CDO70366.1 174 VAETGSGKTLAYgLPILHYLLTEAFSRpipsskirrpvRALILAPTRELALQVSLHLnacltsfevdsveksapagpenitK------------STSQD 260
                 689*********6555555555555449**************************6664445555555555555555533331............33333 PP

                 -B--............................................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS. CS
      ResIII  93 kkka.....................................kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak 147
                  +++                                     +++ s   ++lv+t  +l  +++  e ++   + ++  +++ DEa r+ + 
  CDO70366.1 261 PRNKgkgkakaqppqeqdnkpkhpplvsvaaivggmsaqkqRRILSRGVDVLVATPGRLWDIIQ--EDDELATQIENLRFLVLDEADRMIET 350
                 3222333333335544444444555555555555555554555666667777777777777772..22222333333347788888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.53
# Mc/sec: 4421.75
//
Query:       CDO70367.1  [L=86]
Description: hypothetical protein BN946_scf184999.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.33s 00:00:00.72 Elapsed: 00:00:00.51
# Mc/sec: 506.47
//
Query:       CDO70368.1  [L=130]
Description: hypothetical protein BN946_scf184999.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 809.46
//
Query:       CDO70369.1  [L=110]
Description: hypothetical protein BN946_scf184999.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 688.81
//
Query:       CDO70370.1  [L=201]
Description: hypothetical protein BN946_scf184999.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1213.58
//
Query:       CDO70371.1  [L=345]
Description: hypothetical protein BN946_scf184999.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-05   24.5   7.3      0.005   17.2   0.2    2.6  2  zf-C2H2      Zinc finger, C2H2 type
     0.0012   19.5   7.1      0.027   15.3   0.2    2.6  2  zf-C2H2_4    C2H2-type zinc finger
  ------ inclusion threshold ------
      0.012   16.2   2.7      0.051   14.2   0.5    2.6  3  FOXP-CC      FOXP coiled-coil domain
      0.016   15.7   8.7      0.019   15.4   2.2    3.3  3  zf-H2C2_2    Zinc-finger double domain
      0.019   14.7   0.7      0.031   14.0   0.1    1.8  2  zf-H2C2_5    C2H2-type zinc-finger domain
        4.4    7.7   5.3         28    5.1   0.4    2.4  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.7e-06     0.005       3      23 .]     280     301 ..     278     301 .. 0.96
   2 !    9.3   2.6   0.00054       1.6       1      23 []     307     332 ..     307     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                 ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                 C++Cg+   rk nL++Hi++ H
  CDO70371.1 280 CSICGQGSARKNNLEKHIKSvH 301
                 *******************999 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00054
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 + C   +C + F+rk + +rH ++ H
  CDO70371.1 307 HSCRhpGCERAFSRKNDAERHFQSeH 332
                 578888***************99888 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2     9e-06     0.027       3      24 .]     280     301 ..     278     301 .. 0.96
   2 !    6.3   2.4     0.007        21       2      24 .]     308     332 ..     307     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9e-06
   zf-C2H2_4   3 CpiCgksFsskkaLlrHlkthH 24 
                 C+iCg+   +k++L +H+k++H
  CDO70371.1 280 CSICGQGSARKNNLEKHIKSVH 301
                 *********************9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.007
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkthH 24 
                  C++  C + Fs+k++  rH+++ H
  CDO70371.1 308 SCRHpgCERAFSRKNDAERHFQSEH 332
                 699999***************9998 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.33   9.8e+02       8      14 ..     118     124 ..     117     135 .. 0.74
   2 ?   -2.1   0.0         2   6.1e+03      12      30 ..     283     301 ..     283     306 .. 0.77
   3 ?   14.2   0.5   1.7e-05     0.051       6      31 ..     308     333 ..     305     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.33
     FOXP-CC   8 kWPgCek 14 
                  WP+C +
  CDO70371.1 118 SWPNCLD 124
                 6****54 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
     FOXP-CC  12 CekvledveeflkhlnseH 30 
                 C +     +++ kh++s H
  CDO70371.1 283 CGQGSARKNNLEKHIKSVH 301
                 5566667788999999999 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.7e-05
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHa 31 
                  C+ PgCe++++  ++  +h++seH+
  CDO70371.1 308 SCRHPGCERAFSRKNDAERHFQSEHT 333
                 7************************7 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.086   2.6e+02       7      22 ..     270     285 ..     270     289 .. 0.83
   2 ?   15.4   2.2   6.5e-06     0.019       1      25 [.     292     319 ..     292     320 .. 0.88
   3 ?   -0.7   0.1      0.76   2.3e+03       3      10 ..     325     333 ..     325     340 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.086
   zf-H2C2_2   7 rkHtgekpyeCplCdk 22 
                 rk  +ek + C+ C+ 
  CDO70371.1 270 RKQSKEKTLFCSICGQ 285
                 6788999*******86 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.5e-06
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCp..lCdkaFk 25 
                 nL++Hi++ H ge+p+ C    C  aF+
  CDO70371.1 292 NLEKHIKSvHYGERPHSCRhpGCERAFS 319
                 8******65*********9877999997 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.76
   zf-H2C2_2   3 rrHirk.Ht 10 
                 +rH+ + Ht
  CDO70371.1 325 ERHFQSeHT 333
                 59*985499 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     1e-05     0.031       8      25 ..     285     302 ..     278     303 .. 0.80
   2 ?   -3.2   0.1       2.5   7.4e+03      12      24 ..     320     332 ..     319     333 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
   zf-H2C2_5   8 YstawksnLkRHlrrkHt 25 
                   +a+k+nL++H++ +H 
  CDO70371.1 285 QGSARKNNLEKHIKSVHY 302
                 5599*************6 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.5
   zf-H2C2_5  12 wksnLkRHlrrkH 24 
                 +k++ +RH +  H
  CDO70371.1 320 RKNDAERHFQSEH 332
                 6777799977666 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0094        28       3      23 ..     279     299 ..     277     302 .. 0.89
   2 ?    4.4   0.6     0.016        48       7      23 ..     314     330 ..     314     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0094
                  BBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkS 23 
                  +C +C       n+l++H+kS
   CDO70371.1 279 FCSICGQGSARKNNLEKHIKS 299
                  799999999999********9 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.016
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  C++ F+  n+ + H+ S
   CDO70371.1 314 CERAFSRKNDAERHFQS 330
                  9**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2021.81
//
Query:       CDO70372.1  [L=771]
Description: hypothetical protein BN946_scf184999.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-40  136.5   0.0    2.3e-19   69.0   0.0    3.6  3  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    2.5e-09   37.2   2.0      7e-05   22.9   0.0    3.3  3  PABP         Poly-adenylate binding protein, unique domain
  ------ inclusion threshold ------
      0.022   14.6   2.5      0.056   13.3   2.5    1.6  1  CCDC24       Coiled-coil domain-containing protein 24 family
      0.075   12.8   5.2       0.04   13.6   1.4    2.5  2  PAM2         Ataxin-2 C-terminal region
        0.1   12.6   0.1       0.28   11.2   0.0    1.7  2  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
       0.12   12.3   0.0       0.29   11.1   0.0    1.6  1  Nup35_RRM    Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.1e-11   9.3e-08       1      66 [.      26      89 ..      26      92 .. 0.94
   2 !   31.6   0.0   3.6e-11   1.1e-07       3      69 ..     120     183 ..     119     184 .. 0.91
   3 !   69.0   0.0   7.6e-23   2.3e-19       1      69 [.     264     332 ..     264     333 .. 0.98

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 3.1e-11
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66
                l++++Lpp v +e+L + F+ + p+ + +++rd   ++   + +eF+  e AekAl++l+g+ +++
  CDO70372.1 26 LYITGLPPFVRDEDLAAAFQTCAPF-RPNIPRD-GSNKLLSGTIEFKYLEKAEKALATLQGRPIPN 89
                8************************.******8.7777789********************99987 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 3.6e-11
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 V+ Lp  +t+++L++lF++fG   s++         k ++ VeF  +edA++A +a++  +++g+++
  CDO70372.1 120 VKQLPLGYTDSQLYDLFRPFGALASVRTQA---PFGKDTGVVEFWREEDAREAENAMHCAEVEGQNI 183
                 99*********************7776666...599**********************999999887 PP

  == domain 3  score: 69.0 bits;  conditional E-value: 7.6e-23
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf++nL ++++ + L  +F++fG+i+s++++r+e+g s+gf+fV ++++++A++A++a+ng  +g++ l
  CDO70372.1 264 LFIKNLDTTIDSNGLFSHFRQFGQIVSARVMRNEQGESRGFGFVSYQTPDQAAAAMAAMNGAVIGQKAL 332
                 8****************************************************************9976 PP

>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.064   1.9e+02      42      65 ..     469     492 ..     427     495 .. 0.80
   2 !    9.6   0.1   0.00034         1      19      68 .]     564     613 ..     563     613 .. 0.95
   3 !   22.9   0.0   2.3e-08     7e-05       8      52 ..     706     751 ..     691     763 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.064
        PABP  42 mdnsellellesdeeLrekveeAi 65 
                 +  se+++ ++++ +L e+ve A 
  CDO70372.1 469 LSLSEVVQGIQDPAKLSEQVEAAK 492
                 566899999***********9996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00034
        PABP  19 rLypkiqklnpelAgKITGMLLemdnsellellesdeeLrekveeAievl 68 
                 r++  ++kl++ +++  T +L+ +++ e  + l + e Lr+k+ +A  vl
  CDO70372.1 564 RMFAAVSKLESAQVAELTELLMSLPKRERAMCLFNVEVLRAKIADAKMVL 613
                 899*******************************************8876 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 2.3e-08
        PABP   8 speqqkqiLGerLypkiqklnpelAgKITGMLLemdnsel.lelle 52 
                 + +qqkq+LG++L+  +++   + A+KIT  LL+ d      +l++
  CDO70372.1 706 PINQQKQQLGDKLWRVVKAFGIKGAPKITIALLDQDDLRPlAHLMN 751
                 4569******************************876554144444 PP

>> CCDC24  Coiled-coil domain-containing protein 24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.5   1.9e-05     0.056      83     192 ..     507     614 ..     453     627 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
      CCDC24  83 qllaqrsrrvldYvl.daaaersareespssrPesasskstaasaasgsssasalssasaelealkdkLNvsdiDeVaehLrelLeeEceaLerdieyL 180
                 + +a++++r ld  + +a a++  ++++p+s P++ s +    +++s s s+s ++s ++ + a  +kL  +++ e +e L +l + E+++ + ++e+L
  CDO70372.1 507 SPAASQDSRLLDPTApNATASAPDHPSTPLSMPATLSTPP---RTESPSGSVSTPQSERDRMFAAVSKLESAQVAELTELLMSLPKRERAMCLFNVEVL 602
                 4444577777777766777888889999999999998877...888999999999999999999*********************************** PP

      CCDC24 181 qecleeeadlqk 192
                 ++ + ++++  +
  CDO70372.1 603 RAKIADAKMVLE 614
                 *99988877543 PP

>> PAM2  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.4   1.3e-05      0.04       6      18 .]     200     212 ..     198     212 .. 0.91
   2 ?   -0.6   0.1      0.46   1.4e+03       2       9 ..     491     498 ..     490     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
                 SSTTSS----TT- CS
        PAM2   6 LNPnAkEFVPsfk 18 
                 ++PnA+ FVPs++
  CDO70372.1 200 FSPNAPSFVPSSS 212
                 79*********86 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.46
                 ----SSTT CS
        PAM2   2 kkSkLNPn 9  
                  k +LNP+
  CDO70372.1 491 AKKSLNPS 498
                 6899***6 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.5     1e+04      40      53 .]      66      79 ..      62      79 .. 0.84
   2 ?   11.2   0.0   9.2e-05      0.28      20      52 ..     281     318 ..     275     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.5
  Nup35_RRM_2 40 yvkfesekdaekAL 53
                 +++f+    aekAL
   CDO70372.1 66 TIEFKYLEKAEKAL 79
                 78899999999998 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.2e-05
  Nup35_RRM_2  20 hFasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  hF++fG+Iv   v       ++ + +v + ++++a+ A
   CDO70372.1 281 HFRQFGQIVSARVMrneqgESRGFGFVSYQTPDQAAAA 318
                  **********9888888999999************988 PP

>> Nup35_RRM  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.6e-05      0.29      19      85 ..     274     333 ..     271     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.6e-05
                 GHHHHHHHHHTTS-BSS--CCC------------EETTEEEEEBS-HHHHHHHHT.TTTEEETTEEEE CS
   Nup35_RRM  19 ianevlehFskfGeiledvqvlklgkglnpkpiptgenwvkltYksessaskAlq.engtilngsliv 85 
                 ++n + +hF +fG+i++  +v+++ +g       ++ ++  + Y+++ +a+ A+   ng ++ ++ +v
  CDO70372.1 274 DSNGLFSHFRQFGQIVSA-RVMRNEQG-------ESRGFGFVSYQTPDQAAAAMAaMNGAVIGQKALV 333
                 58999************9.57776554.......5666777789999999999862589988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.55
# Mc/sec: 4250.76
//
Query:       CDO70373.1  [L=530]
Description: hypothetical protein BN946_scf184999.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-18   66.4  23.4    2.1e-18   66.4  23.4    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4  23.4   1.2e-22   2.1e-18       5     352 ..      53     434 ..      49     435 .. 0.67
   2 !    7.0   3.4   0.00013       2.4     212     291 ..     385     459 ..     379     498 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.2e-22
       MFS_1   5 aflsalarsilgpalpl.alaedlgispse..igllltlyalga..........avaslplGrlsdrfGrrrvlllglllfalg.lllll...fa.ss. 84 
                 +++++l+r++lg a  + + +++l+ +p+   + ++ +++++ +          +v ++p  +l+   Gr    llg+ ++++   +ll+   ++ ++ 
  CDO70373.1  53 YLFAYLDRTNLGNARLQgLPQDTLHGDPTGvlFDWVNSVFFFSYvdhlsntrndFVEAVPSPYLAWLRGRWMGSLLGAHGTIIPpKFLLCpdrIIeATa 151
                 555555555555555555555555544444445556666666555566666666333333333333333333555555555555333333232213222 PP

       MFS_1  85 .lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeep 176
                   +  l+v+r+  G++++++ p++  +++  ++kee g+ ++++ ++++++ ++g l++  +  ++      W ++f++ ++ ++l ++l +l lp +p
  CDO70373.1 152 fDFgGLVVARIGLGVFEAGFGPGIPLYMSFFYTKEEMGMRMAYWFGFAAVAGAFGGLIAFGIQ-HVHaavanWKLLFIVEGVPTVLIGLLSMLILPNRP 249
                 24447**************************************************88876443.33345666*************************** PP

       MFS_1 177 perkrkspkeee...........kgtgpaplvp.....awkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvga 258
                  e   +++ke+e           +      + +     ++ a +kd  ++++ +  +++ +++++++++lp++  +++g++ +l +++     +++v+a
  CDO70373.1 250 EETTMFNEKERElalerinrgikA-----DVGKtvnksHIYAAFKDWRIYAAGVLYFGANCALASISAFLPTI-ITTFGYTnALAQLL--TVPPYAVAA 340
                 ***********9998777555531.....222233335666677777665466666666788888*******7.*******7655555..666666666 PP

       MFS_1 259 ilallagrlsdrlgrrrrlllallllllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagtasgl..fntagslggalg 352
                 +   l ++ sdrl++  r +++ ++ +la +g++ll +  s++++ +++ ++i+ g  ++ + ++a+ +++++ +e+ +a+g+  ++ +g+ g++lg
  CDO70373.1 341 VYLCLNSYTSDRLQS--RGIFIAAASTLAGVGYILLLTVpSNNHVRYFATFCITSGTYTTIGVIIAWFAHNLG-SETKKATGIpmYMAIGQCGSVLG 434
                 6666888889**999..5555555555555555544444479999999*******999999999999999996.55555555411555555666665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00013
       MFS_1 212 llialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgl 291
                 +++++++++  ++++ + +  +    lg  +   +g  +++++++g+++++l++ l  ++    ++++ ++l+ll++l +
  CDO70373.1 385 YFATFCITSGTYTTIGVIIAWF-AHNLGSETKKATG--IPMYMAIGQCGSVLGSHLYPKTDG--PRYMLVALCLLVCLNW 459
                 7888999987888888888887.8888888668899..99999999***********99887..5555555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.36s 00:00:01.04 Elapsed: 00:00:00.54
# Mc/sec: 2943.17
//
Query:       CDO70374.1  [L=380]
Description: hypothetical protein BN946_scf184999.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-11   44.0   0.0      6e-11   42.2   0.0    1.9  2  FAD_binding_3   FAD binding domain
      8e-06   26.0   3.1    2.2e-05   24.6   3.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    5.9e-05   22.8   7.0    6.9e-05   22.6   4.4    2.3  3  DAO             FAD dependent oxidoreductase
     0.0001   21.7   0.7     0.0002   20.7   0.2    1.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00023   21.7   1.0    0.00044   20.8   1.0    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00055   18.7   0.7    0.00082   18.2   0.7    1.3  1  HI0933_like     HI0933-like protein
     0.0013   18.1   0.8     0.0025   17.1   0.8    1.4  1  Thi4            Thi4 family
  ------ inclusion threshold ------
       0.01   15.2   0.5       0.25   10.6   0.1    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
      0.026   13.8   2.4      0.044   13.0   2.4    1.3  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.068   12.2   5.2       0.11   11.6   5.2    1.3  1  FAD_binding_2   FAD binding domain
      0.071   12.4   1.0       0.37   10.0   0.7    2.0  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
        0.1   11.4   2.5       0.14   11.0   2.5    1.1  1  Trp_halogenase  Tryptophan halogenase
       0.12   12.0   1.1       0.21   11.2   1.1    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.19   11.6   2.2       0.33   10.8   2.2    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.23   10.5   3.2       0.32   10.0   3.2    1.2  1  GIDA            Glucose inhibited division protein A
       0.82    9.7   2.7         11    6.0   1.4    2.3  2  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   5.3e-14     6e-11       2     292 ..       9     302 ..       8     304 .. 0.75
   2 ?   -1.8   0.0       1.2   1.4e+03     329     348 ..     303     322 ..     302     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 5.3e-14
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCH.HCS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradlele.ssp 96 
                     +++IVG+G +Gl+ a  L++aGv v + e  +   +   + g+ +  +++l+++G+ d il+++ p e+ +e +  +  ++ ++ra + +    p
     CDO70374.1   9 FEIAIVGGGVVGLTCAVALQKAGVPVKVFEAAAAFGEI--GAGIGPNAVRVLNEIGVLDAILQRTGPDEVKAEGFIFR-PGVGDHRAVYRIPtRDP 101
                    5789**************************98877665..78899999*********************999988888.66778888888652444 PP

                    T-CEE.--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHH..TGG.EEEEEEE...... CS
  FAD_binding_3  97 ervtv.ypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktl..gie.fegeetv...... 182
                     + ++ +    ++ +Lv++    +   +f+++ +s+++  ++ + +++   +g++   +a+ + G DG +S+vrk +  g + + +++++      
     CDO70374.1 102 DDAQLfIHRATFLDALVSQ--VDPKIAHFHKRCTSVTESLTNPKRVLLHFLDGTT--HEADVVLGSDGIKSAVRKYVlgGADdRLSFSNTvayral 193
                    4444404445566777777..56677789999************99999999987..78***************9763333333333333000000 PP

                    EEEEEEEEEEEC.-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE..EEEEEEEEEEEE CS
  FAD_binding_3 183 yeagvldvlfda.dlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv..eieevsawtvaq 275
                    ++++ l++   + dl+   +p ++++ ++ ++v++ ++ +    + + ++  +e + + e +t+eevk+ ++    + ++ v   +e+ s+wt++ 
     CDO70374.1 194 IPWEKLKAAGIKtDLT--EAPTCFMGPDKINIVAFAARYD----IPIGAQKLPEGAPSVEYVTREEVKQVYEGWGPDVAIVVdnMPEKPSKWTINV 283
                    3444444333222333..4448888888888888888877....4466666666777789999999999998887777777654678889*****9 PP

                    EE..ESSSEETTEEE-GGG CS
  FAD_binding_3 276 rv..aekyrkgrvflaGDA 292
                     +   ++y kgrv l GDA
     CDO70374.1 284 VYppIKNYAKGRVALLGDA 302
                    986679************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                    GGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 329 elLdtYeeerravaqavvdf 348
                    ++L+ Y++ r+++aq v ++
     CDO70374.1 303 DVLQVYSQLRHPRAQMVWER 322
                    67999*********998776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   3.1     2e-08   2.2e-05       1      32 [.      13      44 ..      13      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   IvG+G+ Gl++A +L+kag+ v ++e++  +G
     CDO70374.1 13 IVGGGVVGLTCAVALQKAGVPVKVFEAAAAFG 44
                   9**************************98887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   4.4   6.1e-08   6.9e-05       2      34 ..      11      45 ..      10      54 .. 0.89
   2 ?   -1.5   0.0       1.3   1.5e+03      68     126 ..     196     259 ..     185     271 .. 0.65
   3 ?   -3.2   0.0       4.3   4.8e+03     255     283 ..     321     346 ..     299     352 .. 0.62

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.1e-08
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags 34
                ++i+GGG++Gl++A +L+++g  V ++e++  +g+
  CDO70374.1 11 IAIVGGGVVGLTCAVALQKAGvpVKVFEAAAAFGE 45
                9****************9999********977664 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 HHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHH.....HHTTTTE.EEEEHHHHHHHST CS
         DAO  68 lreleeelgididyrrtGllslaadeeelealdkllall.....leaglda.elldaeevrelep 126
                 +++l +  gi++d+ +  + +++ d  +  a++++++ +     l+ g+++ e++++eev++++ 
  CDO70374.1 196 WEKLKAA-GIKTDLTEAPTCFMGPDKINIVAFAARYDIPigaqkLPEGAPSvEYVTREEVKQVYE 259
                 6667666.777777777777776555334444444444466657888887769999999998875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.3
                 EEEETTSEEEEEESSEEETTCSSTSCSHH CS
         DAO 255 vtprkdgrvlvGgtadeesgdddpevdee 283
                  + r+ gr+++G  +  +++d d +v e+
  CDO70374.1 321 ERSRRTGRIYAGHGP--HGQDWD-RVGED 346
                 455667888877664..444444.55555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   1.8e-07    0.0002     144     198 ..      10      63 ..       3      81 .. 0.83
   2 ?   -2.4   0.0       1.9   2.1e+03     204     238 ..     133     167 ..     130     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGv 198
                   i++vGgG++G+ +A al k+g+ v + ea+  +  + +  ++  + ++l++ Gv
   CDO70374.1  10 EIAIVGGGVVGLTCAVALQKAGVPVKVFEAAAAFG-EIGAGIGPNAVRVLNEIGV 63 
                  59****************************99997.6777777777777776666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
                  CEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 204 tsvkeidgngeklevvledgeeidadlvvvavGvr 238
                  tsv+e   n++++ ++  dg++ +ad v+ + G++
   CDO70374.1 133 TSVTESLTNPKRVLLHFLDGTTHEADVVLGSDGIK 167
                  67888888888777999999999***999988876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.0   3.9e-07   0.00044       2      39 ..      11      47 ..      10      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.9e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllD 39
                +++vGgG++gl +A al++ g  V+v+e++  +   ++
  CDO70374.1 11 IAIVGGGVVGLTCAVALQKAGVPVKVFEAAAAFG-EIG 47
                89**************************998887.444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.7   7.3e-07   0.00082       2      38 ..      10      46 ..       9     180 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.3e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrK 38
                 +++++GgG  Gl +A++++k+g  V ++e+a ++g+ 
   CDO70374.1 10 EIAIVGGGVVGLTCAVALQKAGVPVKVFEAAAAFGEI 46
                 799******************************9984 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.8   2.2e-06    0.0025      19      59 ..      10      50 ..       6      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T.TTTT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGG.Gawl 59
                +++ivG+G  GLt+a  l k+ ++ v ++e+  ++G  Ga+ 
  CDO70374.1 10 EIAIVGGGVVGLTCAVALQKA-GVPVKVFEAAAAFGEiGAGI 50
                699*****************9.************99535544 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00022      0.25       3      26 ..      20      43 ..      19      44 .. 0.91
   2 ?    2.3   0.0     0.074        83     214     256 ..     115     160 ..     111     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                   HHHHHHHHHHTTEEEEEEESSSSS CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEardrv 26
                   GL++A  L+ aG+ V v+Ea   +
     CDO70374.1 20 GLTCAVALQKAGVPVKVFEAAAAF 43
                   9*******************7655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.074
                    HHHHHTTTTEEEETSEEEEEEEE...ETTCEEEEETTSTEEEESEE CS
  Amino_oxidase 214 ealaeelrgldirlntrVkeikr...egdgvtvtledgevveaDaV 256
                    +al ++  ++  ++ +r+++++    ++  v +++ dg++ eaD V
     CDO70374.1 115 DALVSQVDPKIAHFHKRCTSVTEsltNPKRVLLHFLDGTTHEADVV 160
                    566666666667999********9988889**************98 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.4   3.9e-05     0.044       2      30 ..      13      40 ..      12      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkg 30
                 I+G+G  Gl++a++l+kag+  + + E +
   CDO70374.1 13 IVGGGVVGLTCAVALQKAGV-PVKVFEAA 40
                 9******************9.78888876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.2   9.7e-05      0.11       2      35 ..      11      44 ..      10      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.7e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   + ++G+G+ GL++A+++++aG  v v e + +fg
     CDO70374.1 11 IAIVGGGVVGLTCAVALQKAGVPVKVFEAAAAFG 44
                   68************************99988765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.7   0.00033      0.37      30      62 ..      10      42 ..       4      77 .. 0.88
   2 ?   -0.3   0.0      0.49   5.5e+02      84     121 ..     222     260 ..     195     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00033
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                 ++ ++GgGv+Gl  + + ++ g  V+v++  +a
   CDO70374.1 10 EIAIVGGGVVGLTCAVALQKAGVPVKVFEAAAA 42
                 689***********************9997665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
                  HHHHHHHH-SEEEE---BT.TSS---SC-HHHHHTS-TT CS
  AlaDh_PNT_C  84 llaeavkeadvvigtvlip.GkkaPkLvteemvksMkpg 121
                  ++   +++ d+ ig+ ++p G+++   vt+e vk+  +g
   CDO70374.1 222 NIVAFAARYDIPIGAQKLPeGAPSVEYVTREEVKQVYEG 260
                  566677889999***999868888899******998766 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.5   0.00013      0.14       2      61 ..      11      66 ..      10      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS.S---SS-EE--THHHHTHHHHT--HH CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvesee.igtvgvGeatipsirkllrlLgidee 61
                    i ivGGG  G + A al+ka+   + v++ e+++ +g   +G +  p+ + +l+ +g+ ++
      CDO70374.1 11 IAIVGGGVVGLTCAVALQKAG---VPVKVFEAAAaFGE--IGAGIGPNAVRVLNEIGVLDA 66
                    99*******************...99999998751555..555566888888888888776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.1   0.00019      0.21       1      26 [.      11      36 ..      11      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                EEEES-SHHHHHHHHHHHHHTHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtl 26
                iai+G G +G ++a+ L+kag +v +
  CDO70374.1 11 IAIVGGGVVGLTCAVALQKAGVPVKV 36
                89*******************99975 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.2    0.0003      0.33       2      34 ..      11      43 ..      10      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                +a++G G++G   a ++ +ag++V++++ ++++
  CDO70374.1 11 IAIVGGGVVGLTCAVALQKAGVPVKVFEAAAAF 43
                9*************************9988765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2   0.00029      0.32       2      37 ..      11      45 ..      10      71 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37
                + ++GgG  G+ +A+a+ ++G++v+ + +    ++e
  CDO70374.1 11 IAIVGGGVVGLTCAVALQKAGVPVKVF-EAAAAFGE 45
                78***********************99.33344443 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.4    0.0095        11       1      36 [.      12      42 ..      12      55 .. 0.82
   2 ?    2.5   0.0      0.11   1.3e+02     103     149 ..     113     160 ..     108     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0095
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   aivG+G+ Gl+++ +L +       + +++f+ + +
     CDO70374.1 12 AIVGGGVVGLTCAVALQKA-----GVPVKVFEAAAA 42
                   8*************99877.....588888888443 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
  NAD_binding_9 103 lfeellarlpegvtvevhraevvdlee...radgqavlladgaslaadaV 149
                    ++++l++++    ++ ++++++++++e   +++++ ++  dg++++ad V
     CDO70374.1 113 FLDALVSQVDP--KIAHFHKRCTSVTEsltNPKRVLLHFLDGTTHEADVV 160
                    67788888855..578888888888882224444566668*******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:00.54
# Mc/sec: 2099.58
//
Query:       CDO70375.1  [L=353]
Description: hypothetical protein BN946_scf184999.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-28   98.5   0.1    3.9e-28   97.6   0.1    1.5  1  Sterol_MT_C      Sterol methyltransferase C-terminal
    3.5e-17   62.6   0.0    5.6e-17   61.9   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    4.4e-17   62.5   0.0    7.9e-17   61.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.8e-15   57.4   0.0    3.4e-15   56.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
      4e-14   52.6   0.0    5.5e-14   52.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    1.2e-10   41.5   0.0    1.7e-10   41.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.1e-10   41.2   0.0    5.9e-10   39.8   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
    1.4e-07   31.1   0.0    2.7e-07   30.2   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00021   21.1   0.0    0.00032   20.5   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0011   18.5   0.0     0.0016   18.0   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
     0.0011   18.1   0.0     0.0023   17.2   0.0    1.4  1  Methyltransf_3   O-methyltransferase
     0.0086   15.7   0.0      0.018   14.6   0.0    1.5  1  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.018   14.6   0.0    1.3  1  MTS              Methyltransferase small domain
       0.02   15.9   0.0       0.14   13.2   0.0    2.3  3  Methyltransf_24  Methyltransferase domain
      0.029   13.8   0.0      0.069   12.6   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
      0.053   13.2   0.0      0.082   12.6   0.0    1.2  1  UPF0020          Putative RNA methylase family UPF0020
      0.078   12.4   0.0       0.12   11.8   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
       0.17   11.9   0.0       0.94    9.5   0.0    1.9  2  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Sterol_MT_C  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.1   3.9e-31   3.9e-28       1      65 [.     286     350 ..     286     351 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 3.9e-31
  Sterol_MT_C   1 ltvfrmtkvGrfithnlvkvleflglapkGtqkvaefLekAadsLvaGGkegiFTPmylfvaRKP 65 
                  +tv+rm++ G+f+th+ ++++e+lg++pkGt++v e+L+ Aad+Lv++G+e++FTPmyl++aRKP
   CDO70375.1 286 FTVWRMSNSGKFVTHHGLWLIEKLGIVPKGTWEVGETLKIAADALVKSGREKLFTPMYLVIARKP 350
                  79*************************************************************** PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   5.6e-20   5.6e-17       2     113 ..      98     208 ..      97     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 5.6e-20
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkil 94 
                      + g+rvlD+GCG G  + e+a   + + ++vG+ ++e+ + +Ar+ ++k gl+  ++  +gd+ +l +++ +++fD + + e+  + ++ + ++
       CDO70375.1  98 KPGMRVLDVGCGIGGPAREIA--QFADVQIVGLNNNEFQVGRARKLTKKAGLEnQISYTVGDFMKLAEKFGENSFDAVYAIEATVHAPSWEGVY 189
                      679******************..5679**************************88**********7767999********************** PP

  Methyltransf_31  95 eeiervlkpggilliedpr 113
                      +ei++vlkpgg++ + + +
       CDO70375.1 190 GEIQKVLKPGGVFGVYEWC 208
                      ************9877766 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   7.9e-20   7.9e-17       1      94 [.     104     202 ..     104     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 7.9e-20
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT..SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaekl..pfednsfDlvvssevlhhvedpekalkeiaRvLk 89 
                      LdvGcG G  a+++a+ +  ++vg++ ++ ++ +a++ ++++gl  ++++ v+d+ kl  +f +nsfD+v++ e+  h + +e +  ei +vLk
       CDO70375.1 104 LDVGCGIGGPAREIAQFAdVQIVGLNNNEFQVGRARKLTKKAGLenQISYTVGDFMKLaeKFGENSFDAVYAIEATVHAPSWEGVYGEIQKVLK 197
                      8**************999*************************9*************9656********************************* PP

                      EEEEE CS
  Methyltransf_11  90 pgGll 94 
                      pgG++
       CDO70375.1 198 PGGVF 202
                      ***97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   3.4e-18   3.4e-15       1      97 []     103     200 ..     103     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 3.4e-18
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      vLd+GcG G  ++++a+   + +++g+  +e ++ +ar+  +++gl  ++++ +gd+ +l   f ++sfD+v+++ a  h   + +e ++ ei 
       CDO70375.1 103 VLDVGCGIGGPAREIAQFA-DVQIVGLNNNEFQVGRARKLTKKAGLenQISYTVGDFMKLAekFGENSFDAVYAIEATVH--APSWEGVYGEIQ 193
                      9***************886.8**********************99999***********96559**********988444..579********* PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      +vLkpgG
       CDO70375.1 194 KVLKPGG 200
                      ******9 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   5.6e-17   5.5e-14      45     170 ..      82     210 ..      41     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 5.6e-17
                 HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.....--SEEEEES-GG CS
        CMAS  45 eAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.....kvdrvvsvgafe 138
                 +A  +  + +  k++lkpGm++Ld+GcG G+ +r+ ++  dv++vgl   + q  +a+k  ++++le++ + ++ d+  l+e      +d+v +++a+ 
  CDO70375.1  82 QALARHEHYLAFKMNLKPGMRVLDVGCGIGGPAREIAQFADVQIVGLNNNEFQVGRARKLTKKAGLENQISYTVGDFMKLAEkfgenSFDAVYAIEATV 180
                 5555555666779*******************************************************************9977767788888888875 PP

                 GTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE- CS
        CMAS 139 hvgkenydtffkklkkllkedGllllhtitsl 170
                 h    +++  + +++k+lk++G++ +    ++
  CDO70375.1 181 H--APSWEGVYGEIQKVLKPGGVFGVYEWCMT 210
                 5..679*****************977655554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.7e-13   1.7e-10      18     128 ..      95     215 ..      77     258 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.7e-13
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppel 101
                       +l++g+rvLd+GcG G  +++++++   +++g   ++ +v++a+         + + +    f    +++ +++fd ++++e + h p+++ +
       CDO70375.1  95 MNLKPGMRVLDVGCGIGGPAREIAQFADvQIVGLNNNEFQVGRARkltkkagleNQISYTVGDFMKLAEKFGENSFDAVYAIEATVHAPSWEGV 188
                      23799******************999656**************9877766666644444444443335556889******************** PP

  Methyltransf_23 102 lrqiatllkpgGylllseplaslkedr 128
                         i++ lkpgG++ + e+   + +d 
       CDO70375.1 189 YGEIQKVLKPGGVFGVYEWCMTDRWDP 215
                      *************98888766665554 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.7   6.6e+03      27      69 ..      30      49 ..      10      53 .. 0.50
   2 !   39.8   0.0   5.9e-13   5.9e-10       1      99 []     104     202 ..     104     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.7
  Methyltransf_12 27 Dispsaiedakeklakrennnnnnvelealdlldldgg..ssfDl 69
                     Dis++  +d+++                         +  +++D+
       CDO70375.1 30 DISKEDTQDTEN-------------------------RlsNYVDV 49
                     333333333333.........................14455555 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 5.9e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++GcG G  +r++++   d++++g+  ++ ++ +a++ ++k + +  n++ +++ d  +l+++   +sfD+v+a+++  h + ++ v  +i k
       CDO70375.1 104 LDVGCGIGGPAREIAQF-ADVQIVGLNNNEFQVGRARKLTKKAGLE--NQISYTVGDFMKLAEKfgeNSFDAVYAIEATVHAPSWEGVYGEIQK 194
                      8*************777.***************8888888888775..5888888888888888889*************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +LkpgG++
       CDO70375.1 195 VLKPGGVF 202
                      ******86 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.7e-10   2.7e-07      42     154 ..      94     207 ..      83     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.7e-10
                      H--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHH..HHHHTSS.TEEEEE--TTT-T..TS-T-EEEEEEES-GGG-S CS
  Ubie_methyltran  42 lvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekk..lkeegki.nieflqanaeeLp..feddsfDvvtvsfGlrnvt 130
                       ++ k+g +vlDv +G g  a ++++ +    +v+++ +n+n ++vg+++   k+ g   +i + +++ ++L   f ++sfD v         +
       CDO70375.1  94 KMNLKPGMRVLDVGCGIGGPAREIAQFA----DVQIVGLNNNEFQVGRARklTKKAGLEnQISYTVGDFMKLAekFGENSFDAVYAIEATVHAP 183
                      578899************9998887765....57788888888888876522456666579***********622668****765545555679 PP

                      -HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 131 DklkaLkeayrvlkpGGrlvvlef 154
                        + +  e+ +vlkpGG + v e 
       CDO70375.1 184 SWEGVYGEIQKVLKPGGVFGVYEW 207
                      999***************999886 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.2e-07   0.00032      70     139 ..      92     164 ..      81     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.2e-07
                 T....--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGG CS
        PCMT  70 e....lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyee 139
                      lk+g+rvL+vG+G G  +  +a++     ++v+++  +  v +a++  kk +le +++ +vgD  k  e+
  CDO70375.1  92 AfkmnLKPGMRVLDVGCGIGGPAREIAQFAD--VQIVGLNNNEFQVGRARKLTKKAGLEnQISYTVGDFMKLAEK 164
                 33344*******************9999865..567*******99************997799999997665554 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-06    0.0016       3      76 ..     102     174 ..     100     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfe.kviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvf 76 
                       +lD+ +G GG + ++a+  + ++++++ n+ ++  a + ++  g +++i + +gd+++l +k+ +++   d v+
       CDO70375.1 102 RVLDVGCGIGGPAREIAQFADvQIVGLNNNEFQVGRARKLTKKAGLENQISYTVGDFMKLAEKFGENSF--DAVY 174
                      58*********999888843225777788888888999***********************99988887..6665 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.3e-06    0.0023      36     154 ..      88     203 ..      80     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.3e-06
                     HHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEE.E CS
  Methyltransf_3  36 gqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfif.v 129
                      ++L + ++l    rvl++G   G  +  +a+    D +i+ ++ ++ ++  a+k+ +kag++++i++ +gd +k  e++ +++    fD ++ +
      CDO70375.1  88 EHYLAFKMNLKPGMRVLDVGCGIGGPAREIAQF--ADVQIVGLNNNEFQVGRARKLTKKAGLENQISYTVGDFMKLAEKFGENS----FDAVYaI 176
                     578888889999999999999888888887774..799*****9999999999***************************9998....8877744 PP

                     -S..-GGGHHHHHHHHHHTEEEEEEEE CS
  Methyltransf_3 130 Da..DkssyvnyyeklleLvkvGglia 154
                     +a     s+   y ++ +++k Gg+ +
      CDO70375.1 177 EAtvHAPSWEGVYGEIQKVLKPGGVFG 203
                     551144578888888888888888765 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.8e-05     0.018       9      79 ..      95     173 ..      86     184 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
        MetW   9 elikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaec........vakGlsviqgdldkdlenfedksfdyv 79 
                   +kpg rvld+GcG G   + +++  +v+  Gl+++e  v ++        ++  +s   gd  k  e+f ++sfd v
  CDO70375.1  95 MNLKPGMRVLDVGCGIGGPAREIAQFADVQIVGLNNNEFQVGRArkltkkagLENQISYTVGDFMKLAEKFGENSFDAV 173
                 4589********************************9998866522211111223355667788888888888888876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.8e-05     0.018      27     100 ..      95     172 ..      88     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STT...TTSTTS-EEE CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvl...eeveekkfdl 100
                 ++ +   +vlD+GcG+G  + ++a++ +  +++ ++++   +  a++  ++ +le  ++++  d +   e++ e++fd+
  CDO70375.1  95 MNLKPGMRVLDVGCGIGGPAREIAQFADV-QIVGLNNNEFQVGRARKLTKKAGLEnqISYTVGDFMklaEKFGENSFDA 172
                 55556789****************97665.7889999999999999999999888676677777551113444666665 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.8   8.7e+03      44      57 ..      34      53 ..       7      60 .. 0.58
   2 ?   13.2   0.0   0.00014      0.14      25     101 ..     124     202 ..      81     204 .. 0.84
   3 ?   -1.6   0.0       5.4   5.4e+03      77     102 ..     274     299 ..     269     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.8
  Methyltransf_24 44 e......aglddrvrlikad 57
                     e      + l+++v++i++ 
       CDO70375.1 34 EdtqdteNRLSNYVDVINGY 53
                     13333446677777777765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00014
  Methyltransf_24  25 rlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllf.iDgghaaeavledleallprlapggvv 101
                      ++v + +++    +a++l ++agl++++   ++d+ ++++++ + s+D ++ i +   a +    +  ++++l+pggv+
       CDO70375.1 124 QIVGLNNNEFqVGRARKLTKKAGLENQISYTVGDFMKLAEKFGENSFDAVYaIEATVHAPSWEGVYGEIQKVLKPGGVF 202
                      555556655445568999999***************************665499999999999999999******9996 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 5.4
  Methyltransf_24  77 gghaaeavledleallprlapggvvl 102
                      g+ +++++l+d+ +++++ ++g +v 
       CDO70375.1 274 GDISKAQTLWDVFTVWRMSNSGKFVT 299
                      778899999*******9988887765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.9e-05     0.069       5      77 ..     103     174 ..     100     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSS.EEEEES-CCCHHHHCS-TTSEEEEE CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkN.lrilrgdalkvllelledgslekif 77 
                     vl++GcG G+   ++A+ ++d++++G++ ++  v ++ k  ++ +l+N + ++ gd    l e + ++s++ ++
      CDO70375.1 103 VLDVGCGIGGPAREIAQ-FADVQIVGLNNNEFQVGRARKLTKKAGLENqISYTVGDF-MKLAEKFGENSFDAVY 174
                     89*************95.9****************************9788999996.6677888888888776 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.3e-05     0.082      74     124 ..     119     172 ..      95     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.3e-05
                 H.HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS..---E CS
     UPF0020  74 r.aelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkeg..evdv 124
                 + a+++++g+++++  v +ar+  +kag++++i++ + d+ kL +k g  ++d+
  CDO70375.1 119 QfADVQIVGLNNNEFQVGRARKLTKKAGLENQISYTVGDFMKLAEKFGenSFDA 172
                 347889*************************************95544116665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.12     156     254 ..      94     200 ..      88     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
        PrmA 156 eklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk......eekadviva...NILaevlielaed 245
                  + +k+g +vlDvG+G G  a   a+++  ++v++  +e  v  a++  ++ ++e++++  + ++ +k      e+++d + a    + a      + +
  CDO70375.1  94 KMNLKPGMRVLDVGCGIGGPAREIAQFADVQIVGLNNNEFQVGRARKLTKKAGLENQISY-TVGDFMKlaekfgENSFDAVYAieaTVHAPSWEGVYGE 191
                 56689999************************************************9964.55665544334546777776541114445555555555 PP

        PrmA 246 ikklvkegg 254
                 i+k++k+gg
  CDO70375.1 192 IQKVLKPGG 200
                 555555555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.81     8e+02      65      99 ..       7      41 ..       2      69 .. 0.81
   2 ?    9.5   0.0   0.00094      0.94      24      84 ..      98     153 ..      79     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.81
  Methyltransf_32 65 ekaekraeklgkkfnkrlsfaelsieeatssktlt 99
                     e++ + + ++g+++++ + f++++i+++++++t++
       CDO70375.1  7 ETTAHADGRVGRRIENYTAFWQKDISKEDTQDTEN 41
                     56677778899999999999999999988766544 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00094
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsf 84 
                      ++ ++v+DvG+G g  ++ +a+      +++vg++ +e  v +a+k+ +k g  +++++s 
       CDO70375.1  98 KPGMRVLDVGCGIGGPAREIAQ---FADVQIVGLNNNEFQVGRARKLTKKAG--LENQISY 153
                      56689*************9999...889**********************99..7666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2299.36
//
Query:       CDO70376.1  [L=199]
Description: hypothetical protein BN946_scf184999.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-07   29.3   0.0    6.1e-07   28.5   0.0    1.4  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.4e-11   6.1e-07       2      68 ..      33      97 ..      32     123 .. 0.81
   2 ?   -3.2   0.0      0.15   2.6e+03     174     210 ..     150     185 ..     141     197 .. 0.47

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.4e-11
                -SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCE CS
        p450  2 pgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsg 68
                p+p++lp++g++ ql+ ke++++ ++ l+ +yg+i++l l ++++ ++ ++e+  e+ ++k+ +++ 
  CDO70376.1 33 PSPPALPFLGHITQLD-KEIPQRTFDLLADQYGEIYKLNLITRQSLIVASYELLNELSNDKR-FPKT 97
                5677************.69***************************************9995.4443 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHH CS
        p450 174 vkaveelssllskssvqllllfpllkylptkllrklk 210
                   +v++++++l   s +  + +p++ +l+ +   k++
  CDO70376.1 150 HSFVQAMVDFLIE-SANRANRPPIMNILMRSSSAKYQ 185
                 4444555554433.33444444444455555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1437.77
//
Query:       CDO70377.1  [L=355]
Description: hypothetical protein BN946_scf184999.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-42  145.5   0.0    2.6e-42  145.2   0.0    1.1  1  p450          Cytochrome P450
      1e-15   58.2   0.0    1.6e-15   57.6   0.0    1.3  1  Flavodoxin_1  Flavodoxin


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   2.9e-46   2.6e-42     266     461 ..       3     193 ..       1     195 [. 0.92

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 2.9e-46
                 HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT..EEE-TT-E CS
        p450 266 tvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg..ylipkGte 362
                 ++l++l+aG++Tts  l++++y+L knPe+++klreE+d vl d ++++ ++++kl+y+ a+++E+ Rl+p++ +++ R + +d++i+g  y ipk+++
  CDO70377.1   3 QLLTFLIAGHETTSGLLAFTIYYLCKNPEAMRKLREEVDDVLSD-EPIQLEHIAKLKYTSACLRESRRLSPPAMMRVVRSI-EDTTIGGgkYAIPKDSV 99 
                 789***************************************99.69****************************998875.79999999********* PP

                 EEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSSSEE CS
        p450 363 vivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkpikl 461
                   + + +  r  ++   + e++peR   e+  +k ++ a+ PFG G R+CiG+++A  e +++lat +q+F++ + ++ + +  l++ +l+++pk++++
  CDO70377.1 100 LAITPASAKRIRKC--GAREYKPERLYGENF-EKLPPNAWQPFGYGMRACIGRPFAWQEAHIALATAMQKFDIVM-HDPSYNLELKQ-SLTIKPKGFYI 193
                 **********9997..99************9.77****************************************8.65555555554.69999998876 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.8e-19   1.6e-15      32     143 .]     248     351 ..     238     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.8e-19
                   EEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEEESSSEEE CS
  Flavodoxin_1  32 slsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGdsayenFcaagkkldekleelGaerllklleg 128
                   sl+ +d ++  ++++  +++vt+ f  G+p +n++ +f+++l++ +d++     ++v++avfg+G++ + + + +   +d++l e Ga+rl + ++g
    CDO70377.1 248 SLETLDSAVARLPTDGPVIIVTASFE-GEPADNAA-HFVEWLQNLKDYE----TNNVKYAVFGCGNRDWTY-QRVPTLIDDLLHEHGARRLQERGAG 337
                   455555557799999********776.********.9999999996555....58**************99.************************* PP

                   ETTSTHGHHHHHHHH CS
  Flavodoxin_1 129 dednqegqeeafrkW 143
                   d +  ++  +af++W
    CDO70377.1 338 DAQA-AEFFQAFDEW 351
                   **99.7******999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2688.18
//
Query:       CDO70378.1  [L=308]
Description: hypothetical protein BN946_scf184999.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-10   42.1   0.0      2e-10   41.3   0.0    1.4  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.1e-09   38.1   0.0    2.1e-09   37.3   0.0    1.4  1  FAD_binding_1  FAD binding domain
  ------ inclusion threshold ------
       0.15   12.2   0.0         12    6.0   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   3.3e-14     2e-10       1     108 [.     159     272 ..     159     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 3.3e-14
                    EEEEGGGGHHHHHHHHHHHHHCT...TCSEEEEEEEESSGC.GSTTHH.HHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH.... CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak...dktkvvlvyGnrtee.dllyre.eleelakklpgrlkvvavvsreeagweggkgrvqdalleells.... 87 
                    m a+G+G++P+r++l+++ +++k   d  k +l++G+r+ e d+ly++ +l+e+++ l g + v ++ sr ++++  g  +vqd++  + +     
     CDO70378.1 159 MFAAGSGLSPMRGFLQERSAQKKagrDVAKSTLFFGCRSPEeDFLYSDsDLKEWQE-L-GIVDVRPAFSRYPEKS-FGCRYVQDRVWHDRELvkqa 251
                    88*****************996689999***********988***98736888833.3.3367788888888887.7888******9877777799 PP

                    HSSTTEEEEEECSHHHHHHHH CS
  NAD_binding_1  88 lkkeethvyvCGppgMikavr 108
                     + +++ ++ CG  +M+++++
     CDO70378.1 252 YDHQNARLFTCGSGKMAQGIK 272
                    889**************9876 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   3.6e-13   2.1e-09      40     173 ..       1     128 [.       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.6e-13
                    ----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEHHHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHH CS
  FAD_binding_1  40 lkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTlrqalkyylditgppskqlleaLaefaseeeekqkLekL 135
                    ++Y  Gd+l++  +N++ +V+ +++++ l p   + + l a ++   ++ p+ +p+ ++ +l+ y+++  p +++ l+ L++ +s++ +k  Le+L
     CDO70378.1   1 MTYRAGDYLAILLHNPSRDVHRVISRFSLSP--VQQIVLSAEGP---TSLPVDKPIGVFSLLASYVELSQPATTRDLRILLSAESSKATKTALEDL 91 
                    79*****************************..66677788775...79*********************************************** PP

                    HH-.HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHH CS
  FAD_binding_1 136 ssd.egakeykelklneartllevleefpsvklplefLl 173
                        + ++   ++ ++ea++l    +e p++ +  +fL+
     CDO70378.1  92 PVAyAEKRPSLTVSVVEAPALS--GKEHPFLGVASTFLA 128
                    8763334444444444444443..466666666666665 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0021        12       5      47 ..     158     199 ..     156     216 .. 0.83
   2 ?    4.1   0.0    0.0076        45     131     153 ..     251     273 ..     229     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0021
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkkskkealktkkikliwvvress 47 
                    ++ a+G+G++p+  +l++  ++ k    ++ k +l + +r+ +
     CDO70378.1 158 IMFAAGSGLSPMRGFLQERSAQKK-AGRDVAKSTLFFGCRSPE 199
                    699**************9999987.677777777777777665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0076
                    xxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 131 khknssvgvfvCGppklvkevkk 153
                    +   ++  +f+CG+ k+++ +k+
     CDO70378.1 251 AYDHQNARLFTCGSGKMAQGIKR 273
                    456778899********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2100.16
//
Query:       CDO70379.1  [L=907]
Description: hypothetical protein BN946_scf184999.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.6e-190  632.9   0.1   2.5e-185  617.3   0.0    3.8  2  Het-C     Heterokaryon incompatibility protein Het-C


Domain annotation for each model (and alignments):
>> Het-C  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00017         3       2      25 ..      10      34 ..       8      39 .. 0.73
   2 !  617.3   0.0  1.4e-189  2.5e-185      34     559 ..      65     633 ..      60     635 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00017
       Het-C  2 lvlalllvlla.skaaafGaGnias 25
                l+l++++++++ + ++afGaGni+ 
  CDO70379.1 10 LLLCVVIFCVPsEGVYAFGAGNIPR 34
                566675555551569********96 PP

  == domain 2  score: 617.3 bits;  conditional E-value: 1.4e-189
       Het-C  34 wRhGDiedvlktlallkg............kkftkldvkrvYfGnWLrDysqavDvgtlkkvsaetirilvwvlsflafGyateefevteeRLgvYrpe 120
                 wR+   ed+l+++a+++g            +kf +ld+krvYfGnWLrDysqavDv++l+k++ +ti  l++vl+f+a+Gyat+efevteeRLgvY p+
  CDO70379.1  65 WRYLPQEDTLSEVAKKAGgfalgaligkggSKFGGLDIKRVYFGNWLRDYSQAVDVAGLQKLQLQTIVNLCMVLGFMAHGYATNEFEVTEERLGVYLPQ 163
                 888888999999999888899999999999*******************************************************************95 PP

       Het-C 121 .ehiDnPkgYadnedareydrrLRgpvdereleidpetGmknYianeeggwatsagyvreslarsielgrlytsgskkkkgkeedllealRllGqalht 218
                  ehiDnPkgY+d  +ar+y+++LR+pvd+releidp+tGmknYiane+g w+ts ++vr++l+r+i+lgr+      + +g ++dl+ea+RllGqalht
  CDO70379.1 164 tEHIDNPKGYPD--NARQYHPKLRPPVDPRELEIDPRTGMKNYIANENGTWDTSKALVRRTLERCIHLGRQA-----RANGAKQDLYEAYRLLGQALHT 255
                 59**********..8********************************************************6.....6789999*************** PP

       Het-C 219 leDfaahsnyvelaLrelgekevfphvGkntkikl.egkkvyPlvtGtfGgvDflhsvlGeasDkltq....................sevdeldaale 296
                 leDf ahsn++elaL +lg+++vf hvG++++i+  +gk v PlvtGtfG+ Df+hs+lGea+D++ +                    ++v++l+a+l+
  CDO70379.1 256 LEDFPAHSNFCELALVSLGYTNVFVHVGDQVRIQArNGKWVAPLVTGTFGSSDFIHSLLGEATDHIVRipsyytflstsddyldsqsqASVTDLNAELD 354
                 **********************************988999*************************9765544433333233333222245555555555 PP

       Het-C 297 eaekss......ssssksalksllsklpgtgddlaeeaeelkakseaqeaenasaseskanavpgvspnfdpeevakkiypilefrDkvvksiseai.. 387
                 +a+++s        s++++l+sll klpg++   +e a+el++    +++  +    + ++      +++ p+e+++ ++++l+frD+vvk+i+++i  
  CDO70379.1 355 KARAKSlsqsssGPSAADTLRSLLFKLPGSEG--QEAARELESVERIRAQPGM----PGGKRP----EDMSPQELHAVLWQVLTFRDSVVKKIEKTIga 443
                 55555498887655678899999999998655..5666677654433333333....333333....356789***********************999 PP

       Het-C 388 ....................ekipglekliekisetltvfvlsllaPfvrPiikqvskelkegsseviessakeqfevfedpkctdPthslLskDhfsn 466
                                     ekipgl  liek++++++vf++++l+Pfv+P++kq+++ l ++s evi+ +  +q+evf++p ++dPths+LskDhf+ 
  CDO70379.1 444 lmsptmeampvteqtmrlftEKIPGLGPLIEKLMDSISVFIYTTLEPFVKPLMKQATAGLMAASGEVIDRQ--DQYEVFNNPGASDPTHSFLSKDHFNL 540
                 9*******************************************************************988..************************** PP

       Het-C 467 iLnepaGkvaaaivkyvvprvleawedeevdvdevlddvlevfhhPalrdeeseiqremfetvekWveeksdeeeelkelLssesvkegknhk 559
                 iLnepaG++a+ i+ y++  v++aw+d++++v+ v++d+l++++hP ++d +s+iqr+m++ +++Wv+    +++e+  +L++++v+++kn +
  CDO70379.1 541 ILNEPAGHLAKIILMYAAGLVVKAWDDNSINVHGVTEDILQCLFHPDFHDPNSHIQRQMLDFMRNWVQGLGGQQHEVLGRLTKDAVRNHKNIR 633
                 ******************************************************************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 5591.92
//
Query:       CDO70380.1  [L=497]
Description: hypothetical protein BN946_scf184999.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-29  100.9   0.1    1.1e-28  100.2   0.1    1.3  1  NTF2          Nuclear transport factor 2 (NTF2) domain
      4e-10   39.4   0.0    6.8e-10   38.6   0.0    1.3  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.027   14.3   0.0    1.3  1  RRM_occluded  Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.1   1.8e-32   1.1e-28       1     120 []      12     128 ..      12     128 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 1.8e-32
                 HHHHHHHHHHHHHHHHGGGGGGGGEEEEEEEEEETTE....EEEESHHHHHHHHHHSSCSCEEEEEEEEEEEETSEGGGCEEEEEEEEEEEETTSCCEE CS
        NTF2   1 vakafvqqYYaaldagdregllalyaadaslltpegs....spvkgreaIteffrslpftrielkittvdaqpdeaslstgvlvmvtGelkvddfkkrr 95 
                 v+++fv qYY+ +++  ++ l+ +y  + s+  +  +    +p+ g+++I+++++s  f+++++ i +vdaq   +s ++g++++v Ge+++++++  r
  CDO70380.1  12 VGWQFVPQYYTFVNK-HPNRLHCFY-NKSSTFIHGTEgedgKPCFGQQEIHNKITSIGFQDCKVFIHSVDAQ---SSANGGIIIQVIGEMSNKGEA-WR 104
                 6899***********.*********.9999999999999*********************************...7889****************6.8* PP

                 EEEEEEEEEEETTTEEEEEEEEEEE CS
        NTF2  96 kfsqtfilapqsnkgyfvlnDifrl 120
                 kf+qtf+la+q  +gyfvlnDifr+
  CDO70380.1 105 KFVQTFFLAEQP-NGYFVLNDIFRF 128
                 ***********9.9**********7 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.1e-13   6.8e-10       2      56 ..     369     419 ..     368     423 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.1e-13
                 EEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHH CS
       RRM_1   2 fVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAl 56 
                 fV++++++vte  L++ +   fGpik++++vr+     k +af+eF+s e+A++A+
  CDO70380.1 369 FVKGVTENVTEAALRTTLTTrFGPIKELEIVRN-----KACAFIEFQSLESAKRAI 419
                 9******************99***********6.....*****************8 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.6e-06     0.027       9      56 ..     373     420 ..     369     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.6e-06
  RRM_occluded   9 lsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasL 56 
                   ++++v++a +r+ ++++ g+ik++ +v ++ +A++ef++ ++a +a++
    CDO70380.1 373 VTENVTEAALRTTLTTRFGPIKELEIVRNKACAFIEFQSLESAKRAII 420
                   7899***********999**********************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.38s 00:00:01.38 Elapsed: 00:00:00.57
# Mc/sec: 2638.95
//
Query:       CDO70381.1  [L=882]
Description: hypothetical protein BN946_scf184999.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-49  165.1  16.0    8.4e-10   39.1   0.1   11.8 11  WD40          WD domain, G-beta repeat
    5.1e-28   97.2   0.0     0.0099   16.2   0.0   10.5  9  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    2.1e-26   92.3   0.0    3.2e-26   91.7   0.0    1.3  1  Utp12         Dip2/Utp12 Family
    1.7e-13   50.3   1.6     0.0044   16.0   0.0    6.5  7  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    8.9e-07   28.5   0.0       0.37   10.1   0.0    4.6  6  WD40_like     WD40-like domain
      1e-05   25.5   1.6       0.44   10.4   0.1    5.0  4  eIF2A         Eukaryotic translation initiation factor eIF2A
    1.9e-05   24.4   0.2        5.3    7.1   0.0    6.1  6  PD40          WD40-like Beta Propeller Repeat
    0.00014   21.7   0.0       0.14   11.9   0.0    3.7  4  Gmad1         Lipoprotein LpqB beta-propeller domain
     0.0007   18.4   0.2        2.5    6.7   0.1    3.5  2  Nup160        Nucleoporin Nup120/160
     0.0024   16.6   0.0      0.031   12.9   0.0    2.5  3  ELYS-bb       beta-propeller of ELYS nucleoporin
     0.0083   15.2   0.2        3.5    6.6   0.0    3.6  4  DUF1513       Protein of unknown function (DUF1513)
  ------ inclusion threshold ------
      0.014   13.9   0.2         20    3.6   0.0    3.5  3  Cytochrom_D1  Cytochrome D1 heme domain
      0.096   12.5   0.1       0.23   11.3   0.1    1.5  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
       0.23    9.4   0.0         29    2.4   0.0    3.2  3  IKI3          IKI3 family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.17   2.2e+02       5      33 ..      48      78 ..      44      83 .. 0.74
   2 !   23.3   0.1   6.2e-08     8e-05       3      37 ..      89     122 ..      87     123 .. 0.90
   3 !   17.6   0.1     4e-06    0.0051       4      37 ..     138     172 ..     135     173 .. 0.90
   4 !    9.0   0.0    0.0021       2.7       5      37 ..     183     216 ..     181     217 .. 0.84
   5 ?    3.2   0.0      0.14   1.8e+02       3      29 ..     300     327 ..     298     337 .. 0.75
   6 !   27.6   0.0   2.8e-09   3.6e-06       8      38 .]     348     379 ..     340     379 .. 0.90
   7 !   16.2   0.0   1.2e-05     0.015       3      37 ..     385     420 ..     383     421 .. 0.88
   8 !    9.8   0.0    0.0012       1.5       3      37 ..     427     464 ..     425     465 .. 0.76
   9 !   39.1   0.1   6.5e-13   8.4e-10       1      38 []     469     507 ..     469     507 .. 0.95
  10 !   11.4   0.0   0.00036      0.46      12      38 .]     523     549 ..     516     549 .. 0.90
  11 ?    3.3   0.0      0.13   1.7e+02      14      38 .]     587     611 ..     579     611 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.17
                EEEESS..SSEEEEEEETTSSEEEEEETTSE CS
        WD40  5 rtltGH..ssvtslafspdgawlasGsdDgt 33
                +t+     ++v ++a spd + l+s ++Dg 
  CDO70381.1 48 HTFPFEnrKNVAAIALSPDANVLLSVDEDGR 78
                4444332445999***********9999986 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 6.2e-08
                 EEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHssvtslafspdgawlasGsdDgtvriW 37 
                  l+++  +++v +l+fspdg+++a ++ D +v +W
  CDO70381.1  89 VLHHFNFQKPVKALKFSPDGKYIAVSH-DSHVQVW 122
                 5889988899*************9999.******* PP

  == domain 3  score: 17.6 bits;  conditional E-value: 4e-06
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  rt+tGH + v s+ + pd++ +++ s+D t r++
  CDO70381.1 138 HRTYTGHhDEVLSIEWTPDSKCFITTSRDMTARLF 172
                 589****777**************99*****9986 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0021
                 EEEESSSS.E.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGHss.v.tslafspdgawlasGsdDgtvriW 37 
                 +t+ GH++ v +++ fs dg+ + + s+Dg v  W
  CDO70381.1 183 KTFAGHKDaVlNAF-FSGDGKTIYTVSRDGAVFTW 216
                 6899**55585666.***************99877 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.14
                 EEEEEESS.SSEEEEEEETTSSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGs 29 
                 +++tl+     ++s+a + +g wla G 
  CDO70381.1 300 NIHTLSISqEKISSVAINASGEWLAFGA 327
                 67888755345************98665 PP

  == domain 6  score: 27.6 bits;  conditional E-value: 2.8e-09
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  GH ++ + la+ pdg+ +a+G+dDg+v++W+
  CDO70381.1 348 QGHyFDMNTLAYAPDGQHIATGGDDGKVKVWN 379
                 59*999*************************8 PP

  == domain 7  score: 16.2 bits;  conditional E-value: 1.2e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 c  t+t H   v++++f + g+ l+s+s Dgtvr +
  CDO70381.1 385 CFVTFTEHsAAVSAVDFAKQGQVLFSASLDGTVRAF 420
                 7889****555**********************965 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.0012
                 EEEEEESSSSE..EEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40   3 clrtltGHssv..tslafspdgawlasG.sdDgtvriW 37 
                 + rt+t  ++v  ++la++p+g  +a+G sd   + +W
  CDO70381.1 427 NFRTFTSPTPVqfSCLAVDPSGEVVAAGsSDSFEIFLW 464
                 56777766778778**************4466666666 PP

  == domain 9  score: 39.1 bits;  conditional E-value: 6.5e-13
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++l +l GH  +++slafsp g+ +asGs+D+tvr+W+
  CDO70381.1 469 GKLLDVLAGHeAPISSLAFSPTGNVIASGSWDKTVRVWN 507
                 5788999***999*************************8 PP

  == domain 10  score: 11.4 bits;  conditional E-value: 0.00036
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +v ++af pdg+ la++s Dg v+++d
  CDO70381.1 523 DVLAVAFRPDGKELAASSLDGQVMFFD 549
                 4999***********99*******998 PP

  == domain 11  score: 3.3 bits;  conditional E-value: 0.13
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 +sla+  dg+ +++G+  + v i+d
  CDO70381.1 587 NSLAYTADGRCIIAGGNSKYVVIYD 611
                 7999************999999998 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     5e-05     0.064      35      87 ..      52     102 ..      33     104 .. 0.84
   2 !    6.5   0.0    0.0082        11       3      65 ..     104     172 ..     102     178 .. 0.78
   3 ?    3.9   0.0     0.051        66      36      87 ..     264     314 ..     251     319 .. 0.88
   4 !   16.2   0.0   7.7e-06    0.0099      33      91 ..     346     403 ..     323     404 .. 0.84
   5 !    6.7   0.0    0.0069       8.9      36      79 ..     391     434 ..     388     443 .. 0.80
   6 ?    3.5   0.0     0.067        86      42      76 ..     440     475 ..     433     480 .. 0.88
   7 !    8.7   0.0    0.0017       2.1      37      69 ..     478     510 ..     474     523 .. 0.86
   8 !   11.8   0.0   0.00018      0.23      39      74 ..     522     557 ..     511     566 .. 0.87
   9 !   14.5   0.0   2.5e-05     0.032      33      81 ..     578     626 ..     568     642 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                   ++ ++v ++a +pd ++L  + +dg+  l++ + g v+h+++ ++   v+ l
   CDO70381.1  52 FENRKNVAAIALSPDANVLLSVDEDGRALLVNFKRGVVLHHFNFQKP--VKAL 102
                  467899*************************************9988..6666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0082
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRlngqrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  ++p    iA+ ++d++++v R+  + + ++       + +++  ev s++W pd k +     d + rl+
   CDO70381.1 104 FSPDGKYIAV-SHDSHVQVWRTPNHLIREFapfnlhrTYTGHHDEVLSIEWTPDSKCFITTSRDMTARLF 172
                  5555555664.56788888888888888878888887778899999999999999999999888888776 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.051
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +++ +v +  ++   +lL+v++s g   l ++     +h+ls+++ek ++++
   CDO70381.1 264 QPGTKVVCSTFHRGSNLLVVGFSTGVFGLWEMPAFSNIHTLSISQEK-ISSV 314
                  56788999999999*****************************9995.8776 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 7.7e-06
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  +++++    + La+ pdg+ +a + +dg+v++ +  sg +  +++ +s  av+ +++++
   CDO70381.1 346 KQQGHYFDMNTLAYAPDGQHIATGGDDGKVKVWNTTSGFCFVTFTEHSA-AVSAVDFAK 403
                  56677778899*********************************99999.699998875 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0069
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  +++  v+++ + ++g++L  a  dg+vr +d    +  ++++  
   CDO70381.1 391 EHSAAVSAVDFAKQGQVLFSASLDGTVRAFDLVRYRNFRTFTSP 434
                  567899***********************998877766666655 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.067
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdg.evrlldaesgkvvhsl 76 
                  ++La  p+g++ a + sd+ e+ l ++++gk++  l
   CDO70381.1 440 SCLAVDPSGEVVAAGSSDSfEIFLWSVQTGKLLDVL 475
                  578999*************9***********98765 PP

  == domain 7  score: 8.7 bits;  conditional E-value: 0.0017
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++  ++sLa++p g+++a +  d +vr+ ++ +
   CDO70381.1 478 HEAPISSLAFSPTGNVIASGSWDKTVRVWNVFT 510
                  67889**********************999865 PP

  == domain 8  score: 11.8 bits;  conditional E-value: 0.00018
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                    v ++a++pdgk La +  dg+v ++d++ gk  +
   CDO70381.1 522 ADVLAVAFRPDGKELAASSLDGQVMFFDVNLGKQTN 557
                  67899************************9998765 PP

  == domain 9  score: 14.5 bits;  conditional E-value: 2.5e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++++++  +sLa+  dg+ +  + +   v ++d+ +g +v++++++++
   CDO70381.1 578 SNNASGKAFNSLAYTADGRCIIAGGNSKYVVIYDVREGVMVKKFQISQN 626
                  567889999************************************9987 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   2.5e-29   3.2e-26       1     106 [.     751     855 ..     751     856 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2.5e-29
                 HHHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   1 ndeelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvpaLrslqkslrerlktlskllglnl 99 
                 n++ l+++v+e+ip +dirl+++ Lp++yv +LL+f+a+ + eksph+e+ l w+ all +Hg++l+ + +++ ++Lr+lqk l++  +++s+l+++n 
  CDO70381.1 751 NERPLVQKVYESIPRADIRLVARGLPVVYVGQLLRFVADHM-EKSPHVEFDLLWASALLGAHGRHLRDRAGEYASVLRALQKGLSDFEQLISRLCEDNR 848
                 7999***********************************66.*************************9988777************************* PP

                 HHHHHHH CS
       Utp12 100 grLdyll 106
                  +Ldyl 
  CDO70381.1 849 STLDYLV 855
                 *****96 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18   2.3e+02     190     215 ..      99     123 ..      45     151 .. 0.83
   2 !    5.8   0.0    0.0044       5.6     188     215 ..     190     217 ..     162     227 .. 0.86
   3 !    6.0   0.0    0.0039         5     181     215 ..     344     379 ..     327     383 .. 0.79
   4 !    6.2   0.2    0.0035       4.4     180     216 ..     385     422 ..     379     430 .. 0.84
   5 !    7.5   0.0    0.0013       1.7     187     219 ..     479     511 ..     465     520 .. 0.86
   6 !   16.0   0.0   3.5e-06    0.0044     189     222 ..     523     556 ..     515     560 .. 0.88
   7 ?   -3.3   0.0       2.6   3.3e+03     187     211 ..     683     707 ..     679     710 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.18
    Ge1_WD40 190 iveaafspdGtalatasedGevkffq 215
                 +    fspdG  +a+ s+d  v+ ++
  CDO70381.1  99 VKALKFSPDGKYIAV-SHDSHVQVWR 123
                 555679999999997.6888888876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0044
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffq 215
                   + +a fs dG ++ t s dG v  ++
  CDO70381.1 190 DAVLNAFFSGDGKTIYTVSRDGAVFTWK 217
                 47999******************97765 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0039
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffq 215
                 +lk + h   + + a++pdG  +at   dG+vk + 
  CDO70381.1 344 VLKQQGHYfDMNTLAYAPDGQHIATGGDDGKVKVWN 379
                 4555555446777899*****************996 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0035
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffqv 216
                  ++ ++ehs  ++   f+  G +l  as dG+v+ f +
  CDO70381.1 385 CFVTFTEHSaAVSAVDFAKQGQVLFSASLDGTVRAFDL 422
                 5788999985777888******************9976 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0013
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvyle 219
                 ++ i++ afsp G ++a  s d +v+ + v+  
  CDO70381.1 479 EAPISSLAFSPTGNVIASGSWDKTVRVWNVFTR 511
                 4579999***********************976 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 3.5e-06
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvyledee 222
                  +   af pdG  la++s dG+v ff v+l +++
  CDO70381.1 523 DVLAVAFRPDGKELAASSLDGQVMFFDVNLGKQT 556
                 577889***********************98776 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 2.6
    Ge1_WD40 187 hsliveaafspdGtalatasedGev 211
                 ++   +  f+p G a a+as++G++
  CDO70381.1 683 EARTKCVRFAPTGRAWAAASTEGLL 707
                 556677889************9975 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   1.5e+03     140     197 ..      35      97 ..      25     111 .. 0.69
   2 ?   -0.6   0.0      0.51   6.5e+02       2      74 ..     147     222 ..     146     241 .. 0.77
   3 ?   -2.8   0.0       2.4   3.1e+03     208     243 ..     280     315 ..     271     330 .. 0.62
   4 !    9.9   0.0   0.00033      0.43       6      70 ..     357     422 ..     353     433 .. 0.88
   5 !   10.1   0.0   0.00029      0.37       2      96 ..     481     576 ..     480     586 .. 0.87
   6 ?    1.1   0.0      0.16     2e+02       6      37 ..     589     620 ..     585     626 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
   WD40_like 140 safivfdlfsqnieyk..isvkdiktfeiienkdilligte.geili..lkknvilqkidveg 197
                 ++  vfdl +++ ++    + k++ ++   ++ ++ll   e g+ l+  +k+ v+l++++++ 
  CDO70381.1  35 NRVSVFDLVNNKSHTFpfENRKNVAAIALSPDANVLLSVDEdGRALLvnFKRGVVLHHFNFQK 97 
                 556688888877666322577788888888999987755441555552358899999999886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlklesle..svsivesfedSvifvkllddd.lilvvtlDGtillsllenee 74 
                 e+ si+  ++++ ++  ++d ++++++l+  e      +++ +d v+ + +  d   i  v+ DG++ + + + +e
  CDO70381.1 147 EVLSIEWTPDSKCFITTSRDMTARLFTLDPVEgfRPKTFAGHKDAVLNAFFSGDGkTIYTVSRDGAVFTWKAKPSE 222
                 8999**********************99976511557899999999987666444478899999999877766665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.4
   WD40_like 208 ylivGgsfkyllliNiklnvntfklrlevegiskik 243
                 +l+vG s+    l  +++ +n ++l+++ e is + 
  CDO70381.1 280 LLVVGFSTGVFGLWEMPAFSNIHTLSISQEKISSVA 315
                 566666666666666666666666666666665544 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00033
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsll 70 
                 + + ++g+ i+ Gg+d k++v ++ s+     +++ +  v  v + ++  ++  ++lDGt+   +l
  CDO70381.1 357 LAYAPDGQHIATGGDDGKVKVWNTTSGFCFVTFTEHSAAVSAVDFAKQGqVLFSASLDGTVRAFDL 422
                 667899***************************************9876377789*****976655 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00029
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillslleneeevenekieedistvkviddkll 96 
                 +i s+ +s+ g++i+ G+ d++++v ++ + +       ++  v+ v +  d   +   +lDG+++  ++++++++++ +   dis  +  dd+++
  CDO70381.1 481 PISSLAFSPTGNVIASGSWDKTVRVWNVFTRTRAVEPFTLSADVLAVAFRPDGkELAASSLDGQVMFFDVNLGKQTNIIDGRRDISGGRKADDRMA 576
                 5778999*********************99998877778888899999987772555678**************************9888888775 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.16
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsi 37 
                 + +  +g  i+ Gg+++ + +++++ + +v  
  CDO70381.1 589 LAYTADGRCIIAGGNSKYVVIYDVREGVMVKK 620
                 66788999****************99988865 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.036        46      47     162 ..      43     164 ..      31     171 .. 0.57
   2 !   10.4   0.1   0.00034      0.44     103     162 ..     354     412 ..     342     419 .. 0.79
   3 ?    4.5   0.0     0.022        28      78     159 ..     453     537 ..     441     561 .. 0.56
   4 ?    0.1   0.0      0.49   6.2e+02      75     140 ..     597     620 ..     572     630 .. 0.54

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.036
                 TT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEE.EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT..........T CS
       eIF2A  47 kkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskle.eqkrNtiffspkgklvllaGfgnlaGeleiwdvk..........k 134
                  ++ks++++ ++  ++ ++a sp+++ ++ +  +  a  + f+  + v+++++ +++  +++fsp gk+++++        +++w +           +
  CDO70381.1  43 VNNKSHTFPFENRKNVAAIALSPDANVLLSVDEDGRALLVNFKR-GVVLHHFNfQKPVKALKFSPDGKYIAVSHDSH----VQVWRTPnhlirefapfN 136
                 56666666777776777777777776666665444443333333.44455554256778888888888888764332....333332211111111224 PP

                 TEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A 135 kkkiakaeaanatlvewspdgryvlTat 162
                 ++   + ++ +  ++ew pd++ ++T +
  CDO70381.1 137 LHRTYTGHHDEVLSIEWTPDSKCFITTS 164
                 5555566677777788888888888865 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00034
                 --EEEE-TTSSEEEEE-TTSSS-EEEEEETT.TTEEEEEEE-TT-.-EEEE-TTSSEEEEEE CS
       eIF2A 103 rNtiffspkgklvllaGfgnlaGeleiwdvk.kkkkiakaeaana.tlvewspdgryvlTat 162
                  Nt+ + p g+ ++++G     G++++w+++  +  ++ +e++ a + v++  +g+ +  a+
  CDO70381.1 354 MNTLAYAPDGQHIATGGD---DGKVKVWNTTsGFCFVTFTEHSAAvSAVDFAKQGQVLFSAS 412
                 7*************9984...6********9544444445555442689*******998887 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.022
                 ESSSSC.EEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT.TTEEEEEEE.-TT--EEEE-TTSSEEE CS
       eIF2A  78 yGkmpa.kvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk.kkkkiakae.aanatlvewspdgryvl 159
                  G +++ ++ l++++   +  +   +e++  ++ fsp+g++++ +    +   + +w+v  +++ ++ +  +a+   v + pdg+ ++
  CDO70381.1 453 AGSSDSfEIFLWSVQtgkLLDVLAGHEAPISSLAFSPTGNVIASGSWDKT---VRVWNVFtRTRAVEPFTlSADVLAVAFRPDGKELA 537
                 55555555666666422233333344556666677777777776666665...66666663333333333123333455566555443 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.49
                 EEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE CS
       eIF2A  75 aviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak 140
                 ++i G   + v+++d++                                          +   ++k
  CDO70381.1 597 CIIAGGNSKYVVIYDVR------------------------------------------EGVMVKK 620
                 45555555555555554..........................................3333333 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.19   2.4e+02      12      22 ..      18      28 ..      15      30 .. 0.85
   2 !    7.1   0.0    0.0041       5.3      16      24 ..     104     112 ..      96     116 .. 0.91
   3 ?    4.7   0.1     0.023        30      14      24 ..     195     205 ..     194     212 .. 0.82
   4 ?   -0.4   0.0      0.92   1.2e+03      15      24 ..     358     367 ..     350     367 .. 0.78
   5 ?    0.4   0.0      0.54   6.9e+02      22      35 ..     484     500 ..     481     506 .. 0.71
   6 ?   -2.1   0.0       3.3   4.2e+03      15      21 ..     528     534 ..     526     537 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.19
                EEEEE-TTSSE CS
        PD40 12 gaPsfSPDGkr 22
                g++ f+PDG++
  CDO70381.1 18 GNIVFTPDGNS 28
                7899*****97 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0041
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 fSPDGk++a
  CDO70381.1 104 FSPDGKYIA 112
                 9*******9 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.023
                 EEE-TTSSEEE CS
        PD40  14 PsfSPDGkrla 24 
                  +fS DGk+++
  CDO70381.1 195 AFFSGDGKTIY 205
                 68********9 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.92
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 ++ PDG+ +a
  CDO70381.1 358 AYAPDGQHIA 367
                 789***9986 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.54
                 EEEEEEECT....TCEE CS
        PD40  22 rlaFsSdRg...sGkpd 35 
                 +laFs +++   sG++d
  CDO70381.1 484 SLAFSPTGNviaSGSWD 500
                 57777777777777776 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 3.3
                 EE-TTSS CS
        PD40  15 sfSPDGk 21 
                 +f PDGk
  CDO70381.1 528 AFRPDGK 534
                 799***9 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.29   3.7e+02      23      51 ..      56      82 ..      50      89 .. 0.79
   2 !   11.9   0.0   0.00011      0.14     112     233 ..      97     219 ..      86     229 .. 0.85
   3 ?   -1.2   0.0       1.1   1.4e+03      24      54 ..     353     382 ..     331     415 .. 0.78
   4 ?    3.2   0.1     0.051        65      28      88 ..     442     515 ..     430     548 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.29
       Gmad1 23 vdlrsaAvSrdgqqvaavtapdggrtLvv 51
                 ++++ A+S+d + + +v+  ++gr L v
  CDO70381.1 56 KNVAAIALSPDANVLLSVD--EDGRALLV 82
                48999**************..77777665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00011
       Gmad1 112 gpvtelrvSrDGtRaAvivekdgggkvyvavVvrdadGqksltapvalatglleeavsvsWrsedtLvVlrsseggpvqa.lVsldgsesealpsgnla 209
                 +pv++l+ S+DG  +Av      + +v+v +       +++  +  +  tg  +e++s+ W  +++  + +s+++++    l +++g +++++++ ++a
  CDO70381.1  97 KPVKALKFSPDGKYIAVSH----DSHVQVWRTPNHLIREFAPFNLHRTYTGHHDEVLSIEWTPDSKCFITTSRDMTARLFtLDPVEGFRPKTFAGHKDA 191
                 799*************999....999*998877777667777777777889999*******************99988888899*********999999 PP

       Gmad1 210 apvvavsaapet.lyvtddrgvlq...s 233
                 +  +  s++ +t + v+ d++v++   +
  CDO70381.1 192 VLNAFFSGDGKTiYTVSRDGAVFTwkaK 219
                 9999999999997889999999976441 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.1
       Gmad1  24 dlrsaAvSrdgqqvaavtapdggrtLvvgsy 54 
                 d++ +A ++dgq++a    +dg+++++  + 
  CDO70381.1 353 DMNTLAYAPDGQHIATGG-DDGKVKVWNTTS 382
                 7888999******99988.888888876555 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.051
       Gmad1  28 aAvSrdgqqvaavt.........apdggrtLvvgsyggeasevl....eggsltrpSwdrdgalWvvedgaevv 88 
                 +Av ++g+ vaa +         + + g+ L v +  +++ + l    +g+ +++ Swd    +W v + ++ v
  CDO70381.1 442 LAVDPSGEVVAAGSsdsfeiflwSVQTGKLLDVLAGHEAPISSLafspTGNVIASGSWDKTVRVWNVFTRTRAV 515
                 56777777777766555555555555555565544444443333478888899999999999999887755444 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0025       3.2     221     297 ..     394     433 ..     335     460 .. 0.54
   2 !    6.7   0.1    0.0019       2.5     230     259 ..     491     521 ..     478     643 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0025
                 EET.......TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE..........E- CS
      Nup160 221 vavavvei..gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvsdggqsylvvtys 297
                 +av+ v+   + ++lf++s+dg++r+ +l  ++  +t+                                        s
  CDO70381.1 394 AAVSAVDFakQGQVLFSASLDGTVRAFDLVRYRNFRTF---------------------------------------TS 433
                 11222222334455555555555555555444444443.......................................33 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
                 TTEEEEEETT-EEEEEETTTTEEEEE.EE-- CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat.idll 259
                  +++++ s d+++rvWn+ t +++   ++l+
  CDO70381.1 491 GNVIASGSWDKTVRVWNVFTRTRAVEpFTLS 521
                 58999999************99887766666 PP

>> ELYS-bb  beta-propeller of ELYS nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.4e-05     0.031     205     266 ..     252     312 ..     234     319 .. 0.79
   2 ?   -0.9   0.0      0.38   4.8e+02     223     249 ..     354     380 ..     345     388 .. 0.90
   3 ?   -1.1   0.0      0.43   5.5e+02     219     249 ..     478     508 ..     424     550 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
     ELYS-bb 205 tregrhlclqlaspsgvavsalsyisrtnqlavgfsdgylslwnlktlkkeyhsqleggrvp 266
                 tr g h    +++p g+ v + ++ + +n l+vgfs g + lw++ ++ + +   + + ++ 
  CDO70381.1 252 TRWGVHKRNYFNQP-GTKVVCSTFHRGSNLLVVGFSTGVFGLWEMPAFSNIHTLSISQEKIS 312
                 55566665555555.8999999***********************99877666666666665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
     ELYS-bb 223 vsalsyisrtnqlavgfsdgylslwnl 249
                 + +l+y    +++a g  dg +++wn 
  CDO70381.1 354 MNTLAYAPDGQHIATGGDDGKVKVWNT 380
                 6799**********************7 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.43
     ELYS-bb 219 sgvavsalsyisrtnqlavgfsdgylslwnl 249
                     +s+l++    n +a g  d  +++wn+
  CDO70381.1 478 HEAPISSLAFSPTGNVIASGSWDKTVRVWNV 508
                 2233444444444444444444444444444 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.14   1.8e+02     220     270 ..      18      70 ..      15      98 .. 0.71
   2 ?   -3.9   0.0       4.4   5.6e+03      52      68 ..     185     207 ..     166     211 .. 0.68
   3 !    6.6   0.0    0.0028       3.5     219     278 ..     311     372 ..     299     395 .. 0.81
   4 ?    2.3   0.0     0.057        73     222     276 ..     442     498 ..     439     518 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
     DUF1513 220 gsvavdsegrlvavtsPrgnlvavwdl..asgelleeaaladaagvaaaksg..f 270
                 g ++++ +g+   v sP gn+v v+dl  ++ ++   ++ +++a++a  +++  +
  CDO70381.1  18 GNIVFTPDGNS--VLSPVGNRVSVFDLvnNKSHTFPFENRKNVAAIALSPDAnvL 70 
                 67888888755..579*********861144455667788888888887777542 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.4
     DUF1513  52 FyGH......gvfsadGrlLytt 68 
                 F GH      + fs dG+++yt 
  CDO70381.1 185 FAGHkdavlnAFFSGDGKTIYTV 207
                 44443333337899999999996 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0028
     DUF1513 219 igsvavdsegrlvavtsPrgnlvavwdlasgelleeaa..ladaagvaaaksgflvssGqgk 278
                 i sva++++g+++a  + + +++ vw+ +s++ + +++    d+  +a a++g ++++G ++
  CDO70381.1 311 ISSVAINASGEWLAFGAKKLGQLLVWEWQSESYVLKQQghYFDMNTLAYAPDGQHIATGGDD 372
                 78************************88777776655422789*****99999777777643 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.057
     DUF1513 222 vavdsegrlvavtsPrgnlvavwdlasgelleeaalada..agvaaaksgflvssGq 276
                  avd +g++va+ s     +++w+ ++g+ll   a ++a  + +a  ++g +++sG+
  CDO70381.1 442 LAVDPSGEVVAAGSSDSFEIFLWSVQTGKLLDVLAGHEApiSSLAFSPTGNVIASGS 498
                 58999*************************998887765336777777777777776 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.034        43     126     200 ..      55     124 ..      26     130 .. 0.75
   2 ?    3.6   0.0     0.016        20      35      59 ..     189     213 ..     161     217 .. 0.84
   3 ?    3.1   0.0     0.021        27      12      68 ..     370     426 ..     365     435 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.034
                   ---EEEEEE-SSSSEEEEEETTTTEEEEEE-SSSSSEEEEEEE--SSEEEEEE-TTSSEEEEEEGGGTEEEEEET CS
  Cytochrom_D1 126 esRVaaivasperpefvvnlkdtgeillvdysdlknlktrtieaakflhDggldpdkRYflaaanaedkvavvdt 200
                      Vaai  sp  +  ++++ + g++llv+++ +  l  ++ + +k ++   ++pd++Y  +    + +v+v++t
    CDO70381.1  55 RKNVAAIALSPDAN-VLLSVDEDGRALLVNFKRGVVL--HHFNFQKPVKALKFSPDGKYIAV--SHDSHVQVWRT 124
                   45688998888887.89999999999**999987544..55667777778888999988766..44446777665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.016
                   TTEEEEEE-TT.SSEEEEEETTSEE CS
  Cytochrom_D1  35 yalHisrvfasdgRyvyvigRDgkv 59 
                    +      f+ dg+ +y+++RDg v
    CDO70381.1 189 KDAVLNAFFSGDGKTIYTVSRDGAV 213
                   555566789**************87 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.021
                   GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSS CS
  Cytochrom_D1  12 rdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwake 68 
                    d+gkv++ + +s   + ++  + a   ++ fa++g  ++ ++ Dg+v  +DL + +
    CDO70381.1 370 GDDGKVKVWNTTSGFCFVTFTEHSAAVSAVDFAKQGQVLFSASLDGTVRAFDLVRYR 426
                   5889999999999999999999999889999*********************98766 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00018      0.23      37      57 ..     380     400 ..     373     410 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
                 SEEEEEEEEESSHHHHHHHHH CS
       RRM_1  37 kskgfafVeFeskedAekAle 57 
                 ++ gf+fV+F+ +++A +A++
  CDO70381.1 380 TTSGFCFVTFTEHSAAVSAVD 400
                 689****************97 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.023        29     302     335 ..      94     127 ..      69     222 .. 0.81
   2 ?   -0.3   0.0      0.15     2e+02     259     279 ..     483     503 ..     451     510 .. 0.80
   3 ?    2.2   0.0     0.027        35     423     508 ..     518     604 ..     514     647 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.023
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 302 keeeevqsLaWsadSevLavrledrvqlwtisNy 335
                 + +++v++L+ s d++  av+    vq+w + N 
  CDO70381.1  94 NFQKPVKALKFSPDGKYIAVSHDSHVQVWRTPNH 127
                 5567788888888888888888888888888774 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.15
                 XXXXXXXXXXXXXXXXXXXXX CS
        IKI3 259 eaLaWrPsGsliAstqrkkdk 279
                 ++La+ P+G++iAs  ++k++
  CDO70381.1 483 SSLAFSPTGNVIASGSWDKTV 503
                 68***********99886655 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.027
                 XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 423 leleaavndvafsksnsktlavllsdgelaiaeldlekaka...skepklvsevsknstasesvevalaklkqlafinddtllvlassa 508
                 ++l+a v +vaf ++ ++ la+   dg++++++++l+k+++   ++++    +  ++    +s++ + +++++la++ d   +++  ++
  CDO70381.1 518 FTLSADVLAVAFRPDGKE-LAASSLDGQVMFFDVNLGKQTNiidGRRDISGGRKADD-RMAASNNASGKAFNSLAYTADGRCIIAGGNS 604
                 678999**********98.******************99997765555555555555.5555566678999999999999888877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 5447.66
//
Query:       CDO70382.1  [L=513]
Description: hypothetical protein BN946_scf184999.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-103  345.2  16.6   6.6e-103  345.0  16.6    1.0  1  Sugar_tr  Sugar (and other) transporter
    9.7e-32  110.2  32.2    5.9e-23   81.4  13.6    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0075   16.5   0.1      0.015   15.6   0.1    1.4  1  CHASE8    Periplasmic sensor domain
  ------ inclusion threshold ------
      0.038   12.9   6.2      0.031   13.2   1.3    2.3  2  MFS_5     Sugar-tranasporters, 12 TM
        0.1   12.8   5.0       0.16   12.2   0.2    2.6  2  DUF2838   Protein of unknown function (DUF2838)
       0.34   10.8   0.0       0.34   10.8   0.0    2.5  4  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi
        9.3    6.5  20.9        3.7    7.7   0.8    3.0  3  DUF3792   Protein of unknown function (DUF3792)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.0  16.6  2.6e-106  6.6e-103       3     452 .]      14     461 ..      12     461 .. 0.92

  Alignments for each domain:
  == domain 1  score: 345.0 bits;  conditional E-value: 2.6e-106
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 ++aalg++ fgYd+g+i+++l  ++f+   g   s++        +gl+v+++l+Ga+++ +++g l+d +GR+ ++l+++++f+ g+ +qaaa+   s
  CDO70382.1  14 FFAALGSVTFGYDLGIIASVLPAPDFIATTGNPDSTA--------QGLVVGCLLLGAFASNIYVGSLADHVGRRAAILAGCLVFLLGGSIQAAAQ---S 101
                 789**********************666655555443........59************************************************...* PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylv 199
                 +  ++ gR+l+G+g+G+  +l+P+y++EiA++++Rg+l++l+q+++ +G l+a+++g+g     +++ +wr++l++ql+pa+ l++++l+lPESPryl 
  CDO70382.1 102 IRYMYGGRFLAGMGIGMLAMLAPLYQAEIAHPSIRGRLTTLQQFMLGIGALIASFIGYGCfHGLTGQAQWRVPLAIQLLPAVPLAFFILLLPESPRYLA 200
                 ***********************************************************964445579******************************* PP

                 HTT-HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HH CS
    Sugar_tr 200 ekgkeeeakevlaklrge.....edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..ll 291
                 +kg+ +ea +vla+l        + +  e +e+ ++ + eq+e+   w +l+  k++++rl++g+++q+  q+tG+ +i yy+p+ife++g+++s  l 
  CDO70382.1 201 MKGRNDEALQVLARLHAHgdihdAFVVNEHKEILAQVRIEQQETRDAWAQLFLVKSNFRRLVLGIAIQFSIQMTGVSVIQYYAPRIFESIGIDTSttLG 299
                 **************88775455555566667777777777777799*************************************************5555 PP

                 HHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskal 388
                    + +v+  +     i+ +dr+GRR+ +++G a   + fvi +  i++++ +++++ as ++++++ lf  +f+ + gp+ w +  E+f +++R+ka+
  CDO70382.1 300 LQSGNSVIALIGEALCIWYIDRLGRRRPFIWGNALSGLTFVIGTilIAVFPAEKGNQNASRAFVAMTWLFNLVFSSCCGPLSWAIPVEMFNSATRAKAT 398
                 55566677777777779***************998888888877788899999999******************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 389 aiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ai+  + w++nf i++++p++++++g ++++lvfa++    ++f + f+petkg +lee+++ f
  CDO70382.1 399 AITSSAAWISNFMIAQVTPVAFDHVG-WKYYLVFAICGFTNALFFWAFLPETKGIPLEELDAYF 461
                 **************************.********************************99765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4  13.6   2.3e-26   5.9e-23       2     261 ..      17     315 ..       9     317 .. 0.82
   2 !   37.3  16.3   5.5e-13   1.4e-09       3     176 ..     267     450 ..     265     466 .. 0.81

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 2.3e-26
       MFS_1   2 llaaflsalarsilgpalpl..alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGl 97 
                 +l+ +  +++ +i++++lp   ++a++ + + +++gl++++  lga+++++ +G+l+d +Grr  +l+g l+f+lg ++ ++ a+s+ +++ +r+l+G+
  CDO70382.1  17 ALGSVTFGYDLGIIASVLPApdFIATTGNPDSTAQGLVVGCLLLGAFASNIYVGSLADHVGRRAAILAGCLVFLLGgSIQAA-AQSIRYMYGGRFLAGM 114
                 3444555555555777776555778888899999******************************999999999999444444.46666*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 g g+l+ ++  + a++++++ rgr + l + + ++Ga+++  +g  +   + g   Wr++  i  + ++ ++  f+lllpe+p+  + k   +e     
  CDO70382.1 115 GIGMLAMLAPLYQAEIAHPSIRGRLTTLQQFMLGIGALIASFIGYGCFhGLTGqaqWRVPLAIQLLPAVPLAF-FILLLPESPRYLAMKGRNDEAlqvl 212
                 *********************************************76644444777**************966.678888888888888777777**** PP

       MFS_1 189 ...............................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls.....glllagllla 251
                                                 ++++a+l+   k+ +++ vl  + i + + ++g+s + ++ p +  e  g++     g l++g   +
  CDO70382.1 213 arlhahgdihdafvvnehkeilaqvrieqqeTRDAWAQLFL-VKSNFRRLVLG-IAIQFSIQMTGVSVIQYYAPRI-FESIGIDtsttlG-LQSG--NS 305
                 *************9999999999988875555555555555.77777777775.88888888999999*******7.9*****9888887.7777..77 PP

       MFS_1 252 llalvgaila 261
                 ++al+g +l+
  CDO70382.1 306 VIALIGEALC 315
                 7777775555 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 5.5e-13
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f.a.........sslw.lll 89 
                 + + + +++ s++   +p  + e+ gi+ s+   l ++ ++ a+++  +  + +dr+Grrr +++g +l++l++++++ + a         + +  +++
  CDO70382.1 267 IQFSIQMTGVSVIQYYAP-RIFESIGIDTSTTLGLQSGNSVIALIGEALCIWYIDRLGRRRPFIWGNALSGLTFVIGTiLiAvfpaekgnqNASRaFVA 364
                 556677888888888888.88999999988877789*************************************77777634234457777433443566 PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                   +++  +++++  p++ a+ +++f+   r++a+++ s+++ ++  + + + ++  +++gW + ++++ai ++  +++f+++lpe++
  CDO70382.1 365 MTWLFNLVFSSCCGPLSWAIPVEMFNSATRAKATAITSSAAWISNFMIAQVTPVAFDHVGWKY-YLVFAICGFTNALFFWAFLPETK 450
                 6666777788***********************************999999999999***984.56666666666666557776654 PP

>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   5.7e-06     0.015      30      72 ..     206     249 ..     205     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.7e-06
      CHASE8  30 aaAreiLaaLkaepeiaaaavydaegkllaeyaresseak.eel 72 
                 ++A ++La L+a+++i+ a+v+++++++la+ + e++e+   ++
  CDO70382.1 206 DEALQVLARLHAHGDIHDAFVVNEHKEILAQVRIEQQETRdAWA 249
                 6799**************************99888777763333 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.3   1.2e-05     0.031      87     138 ..      67     119 ..      52     161 .. 0.83
   2 ?    1.8   0.3     0.035        90     151     224 ..     283     357 ..     257     366 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
       MFS_5  87 tivgsladkfgrkracltyailyil.acitkhsgeykvlmigrvlggiatsll 138
                  +vgslad+ gr+ a l  ++++ l   i      ++ +  gr+l g+   +l
  CDO70382.1  67 IYVGSLADHVGRRAAILAGCLVFLLgGSIQAAAQSIRYMYGGRFLAGMGIGML 119
                 469*****************9997615688888888999999****9987766 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.035
       MFS_5 151 nkrgfddsllsivfskaiflgnslvaiiaglaanllaerlgfgpvapfdlalsvll.igaviilsswsenygdts 224
                   r f+   + +  +  +  gns++a+i   +     +rlg      +  als l  +  +i+++ ++ + g+ +
  CDO70382.1 283 APRIFESIGIDTSTTLGLQSGNSVIALIGEALCIWYIDRLGRRRPFIWGNALSGLTfVIGTILIAVFPAEKGNQN 357
                 555566555555555556679********************9554445677776651445677788888888854 PP

>> DUF2838  Protein of unknown function (DUF2838)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   6.3e-05      0.16      75     101 ..     365     392 ..     337     402 .. 0.71
   2 ?    1.6   0.8      0.12   3.1e+02      40      68 ..     415     444 ..     404     467 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
     DUF2838  75 seklfkavfalanGplalAiil.wrnsl 101
                  ++lf++vf+  +Gpl++Ai++ ++ns 
  CDO70382.1 365 MTWLFNLVFSSCCGPLSWAIPVeMFNSA 392
                 789****************976356665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
     DUF2838  40 lryityrkkklhyfl.lDfCYfvnilllll 68 
                 +  + + + +++y+l + +C f+n+l++ +
  CDO70382.1 415 VTPVAFDHVGWKYYLvFAICGFTNALFFWA 444
                 444668888999997468999999887654 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       2.3   5.9e+03      31      68 ..      86     125 ..      80     132 .. 0.44
   2 ?   10.8   0.0   0.00013      0.34     125     180 ..     168     225 ..     154     231 .. 0.83
   3 ?   -2.2   0.0       1.3   3.4e+03      39      76 ..     245     282 ..     235     289 .. 0.76
   4 ?   -3.7   0.2       3.8   9.8e+03      45      76 ..     397     428 ..     382     432 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
     Wzy_C_2  31 lvlgllds..ksrsrrlrlrpklvlrvvalvlallglall 68 
                 ++++ll    ++ ++++r+   + +++ +++ +l++la l
  CDO70382.1  86 CLVFLLGGsiQAAAQSIRYMYGGRFLAGMGIGMLAMLAPL 125
                 5555555544344444444433333333333444444333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
     Wzy_C_2 125 nlaaklalarklihlsPepavierlils...lallGdedeAeqilararalfpeedakw 180
                 ++++ ++la +l+   P + +i  l +s   la++G+ deA+q+lar++ ++++ + ++
  CDO70382.1 168 QAQWRVPLAIQLLPAVPLAFFILLLPESpryLAMKGRNDEALQVLARLH-AHGDIHDAF 225
                 677888888889999999999998888766689***************9.777776655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
     Wzy_C_2  39 ksrsrrlrlrpklvlrvvalvlallglalllsilhdyq 76 
                 ++ + +l l++  + r+v ++++ + + ++++ +++y+
  CDO70382.1 245 RDAWAQLFLVKSNFRRLVLGIAIQFSIQMTGVSVIQYY 282
                 67788888888888888888888888888888888777 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3.8
     Wzy_C_2  45 lrlrpklvlrvvalvlallglalllsilhdyq 76 
                  ++++ ++++++ +++a ++ ++   + ++y+
  CDO70382.1 397 ATAITSSAAWISNFMIAQVTPVAFDHVGWKYY 428
                 44456677777777777777777766666666 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       6.8   1.7e+04      65      74 ..      10      19 ..       5      32 .. 0.51
   2 ?    6.4   9.0    0.0039        10       9     110 ..      49     157 ..      47     162 .. 0.71
   3 ?    7.7   0.8    0.0015       3.7      39     107 ..     302     373 ..     294     381 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.8
     DUF3792 65 llnGllvGll 74
                +l G++++l 
  CDO70382.1 10 WLCGFFAALG 19
                3333333332 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0039
     DUF3792   9 llialvitlilllilalllyftslsekvlsililiililsvfigGflagkkakkk.....gllnGllvGllyfli.llllslli.kksgsafslkllik 100
                 ++ +lv+ ++ll ++a  +y +sl ++v + ++++  +l +++gG + +  +  +     ++l G+ +G+l +l  l+   ++  +  g + +l++++ 
  CDO70382.1  49 TAQGLVVGCLLLGAFASNIYVGSLADHVGRRAAILAGCLVFLLGGSIQAAAQSIRymyggRFLAGMGIGMLAMLApLYQAEIAHpSIRGRLTTLQQFML 147
                 66789999************************************9987766554433333899999999998888444444444333333444444444 PP

     DUF3792 101 llllllagai 110
                  + +l+a+ i
  CDO70382.1 148 GIGALIASFI 157
                 4444455544 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0015
     DUF3792  39 ililiililsvfigGflagkkakkkgllnGllvGllyfli.llllslli..kksgsafslklliklllllla 107
                  ++++i +++ +++ +++ +  +++ +++G ++  l f+i ++l++++   k +++a+ +  ++++l+ l++
  CDO70382.1 302 SGNSVIALIGEALCIWYIDRLGRRRPFIWGNALSGLTFVIgTILIAVFPaeKGNQNASRAFVAMTWLFNLVF 373
                 5678899999999999**************998888888864444444423333333333334444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3466.80
//
Query:       CDO70383.1  [L=536]
Description: hypothetical protein BN946_scf184999.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-28   99.2   0.0    3.8e-28   98.7   0.0    1.2  1  Alpha-L-AF_C    Alpha-L-arabinofuranosidase C-terminal domain
  ------ inclusion threshold ------
      0.078   12.9   0.0       0.16   11.9   0.0    1.4  1  Glyco_hydro_44  Glycoside hydrolase family 44


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   4.2e-32   3.8e-28       1     168 []     326     527 ..     326     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 4.2e-32
                   EEEEE--S-....SSS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEETTE.EEE-HHHHHHHHHHHS--.SEEEEEEE CS
                   xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds....pglleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliwdngkvvgtpsYyvqklfsknag.gtvlpvel 92 
                   +Ey+vw ++    +++leq +tl dAla A +l++l r+aDvV +a++A+ vnvi+     p++++++g  +++++Y+++ lfs++++ gt l+++l
    CDO70383.1 326 DEYGVWDETvgtpENGLEQFYTLADALAMASWLNVLVRQADVVNIACIAQSVNVIS-----PLVTSPTG-LFRQTIYWPLFLFSRYMRgGTSLRISL 416
                   9*****877887559*****************************************.....*****999.****************8769******* PP

                   E--EE.....EEEEEET.......................................SS--EEEEEEETT-.-SEEEEEEEE.E-STT----SSSTTS CS
                   xxxxx.....xxxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  93 espky.....eikgege.......................................aeeavevevdleglekaskaevtvl.sgdlkaeNtfenpek 144
                   +sp+y     +     +                                       +  +v+++v +e+   a  +e+  l ++d+ a+N   n+++
    CDO70383.1 417 TSPTYsgetlP-----RwistikgapkdldasavlhidavtgarslriavvnrsdtEAYEVPIRVAFEED-VAWDVEAHELwHEDVRARNGWGNEDE 507
                   *****666440.....14446666777999************************6433366666666664.5555666666699************* PP

                   SEEEEEEE.EE-E..EEEEE-TTE CS
                   xxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C 145 vvpkeeklakvsggkftytlpayS 168
                   v+ k++k  +++g   ++t+ a+S
    CDO70383.1 508 VSVKTRKE-EWDG---RWTFRAHS 527
                   ***99999.8886...68888877 PP

>> Glyco_hydro_44  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.16     107     187 ..     179     256 ..     162     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
                     ...HHHHHHHHH--TSTTS--EEEESS-GGGHHHH-TTT--S---HHHHHHHHHHHHHHHHHH-TT-EEEEEEE-SHHHH...T CS
  Glyco_hydro_44 107 tkewvnhlvkklgsasatgvkfysLDNEpelWssTHrdvhpekvtydellertidlAkavkaadpdaevlGpaswgwtay...f 187
                      +++ n   k+ g+++  +vk++ L NE+  W +     +  + +++e  ++  + A+a++ +dp + ++G  + g  ++   +
      CDO70383.1 179 DTHYANLRRKNTGRDEPHNVKYWGLGNEV--WGE----WQVGQQSASEYGTKARQWAHAIRLVDPFVILVGCGETGLNQWdgvV 256
                     566777778899999************95..775....5667899*******************************99985542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3778.34
//
Query:       CDO70384.1  [L=365]
Description: hypothetical protein BN946_scf184999.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.32   10.8   1.3         23    4.8   0.1    2.7  2  zf-H2C2_5  C2H2-type zinc-finger domain
        1.8    9.2   9.8       0.22   12.0   0.5    2.9  2  zf-C2H2    Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0038        34       1      24 [.     281     306 ..     281     307 .. 0.82
   2 ?    4.8   0.1    0.0026        23      14      26 .]     330     342 ..     328     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0038
   zf-H2C2_5   1 YKCsq..CDYstawksnLkRHlrrkH 24 
                 ++C++  C Y t +++nLk H   kH
  CDO70384.1 281 FFCDYpgCGYGTPRSNNLKTHKNEKH 306
                 6777777999*********9966666 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0026
   zf-H2C2_5  14 snLkRHlrrkHtg 26 
                 ++L+ Hl++kH g
  CDO70384.1 330 GDLRDHLAKKHGG 342
                 689********87 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   2.5e-05      0.22       1      23 []     281     306 ..     281     306 .. 0.91
   2 ?   -0.2   3.2      0.19   1.7e+03       2      23 .]     313     340 ..     313     340 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 + C+  +Cg+  +r+ nLk+H +  H
  CDO70384.1 281 FFCDypGCGYGTPRSNNLKTHKNEkH 306
                 678999***************99888 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.19
                 EET..TTTEE...ESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCgks...FkrksnLkrHirt.H 23 
                 +Cp  dC+ks   ++r  +L+ H+ + H
  CDO70384.1 313 RCPfnDCPKSrdgYCRIGDLRDHLAKkH 340
                 5888888865333677777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2810.13
//
Query:       CDO70385.1  [L=586]
Description: hypothetical protein BN946_scf184999.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-57  191.4   0.0    1.5e-56  190.6   0.0    1.4  1  Rad52_Rad22  Rad52/22 family double-strand break repair prote
  ------ inclusion threshold ------
      0.075   13.0   5.3       0.13   12.3   5.3    1.3  1  TFIIA        Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.0   1.6e-60   1.5e-56       1     152 [.      37     189 ..      37     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 1.6e-60
  Rad52_Rad22   1 kietlqskLekklgpeyvsqregksgk.kvaylegskviqlaNevFgfnGWsseiesievdeieeeqegqrysvkaealvrvtlkdGtyrediGfgta 97 
                  ki+++q+kL+kklgpey+sqr+g++g+ k++y eg+k+i+laNevFgfnGWss++ si++d+++ ++e++ry+v+++a+vrvtl+dG ++ed+G+g  
   CDO70385.1  37 KIASMQAKLDKKLGPEYISQRPGPGGGpKLTYAEGWKIINLANEVFGFNGWSSHVVSITTDFVDYSEETRRYNVGVTAIVRVTLRDGVFHEDVGYGLL 134
                  6889********************************************************************************************** PP

  Rad52_Rad22  98 tnvpskgeafekakKeAvtdAlKrAllqfgnvlGnclydleqekkvkklkkedge 152
                  +n +skg+a  k+kKeAvtdA+Kr+l++fgn+lGnclyd++++++v k+k ++++
   CDO70385.1 135 ENSKSKGAALDKCKKEAVTDAVKRTLRNFGNLLGNCLYDKSYTQEVVKIKVPPPK 189
                  **********************************************999887765 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.3   1.4e-05      0.13      79     190 ..     214     359 ..     180     441 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
       TFIIA  79 a.............sqapastsqslpslvipagksvqslt.a....................nssaataatfslpakleppvqipagvtlqtasgqlyk 143
                 +             + +++ t +s+p++++p +++v+s+t +                     + +a  ++ ++p++l++p+++pag   q+  g  + 
  CDO70385.1 214 SstsggisgastmaTGSSNDTIKSEPAYTMPPPAHVPSNTmNegypqdvhlngglkarpnslATPTARDKAPAPPTGLQTPMHTPAGRPAQVSGGDRMA 312
                 2333334444444433444555566666666666666666436666677777777777666755556777788999999999****9999999998777 PP

       TFIIA 144 vnvqasgaqqiaaqplqqvvqq...sqgsaaqssvaalqaqsqqaqalae 190
                 +nv+ + a+++ + + +q  q    + +  aq++ a+    +++ + +++
  CDO70385.1 313 QNVAHRHAARLRQIQEAQEAQRredEAARKAQATSAEG---KPSEGRAVR 359
                 77744444444433333333332212222222222222...222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3922.33
//
Query:       CDO70386.1  [L=377]
Description: hypothetical protein BN946_scf184999.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2549.82
//
Query:       CDO70387.1  [L=396]
Description: hypothetical protein BN946_scf184999.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   12.7   1.0         18    5.4   0.1    2.5  2  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.001        19      25      46 ..      39      60 ..      12      72 .. 0.68
   2 ?    5.4   0.1     0.001        18       6      46 ..      92     132 ..      88     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.001
      PRIMA1 25 rypplpppppppppprllslta 46
                r  p+pp +ppp   +ll ++a
  CDO70387.1 39 RVLPVPPGSPPPCDSQLLESAA 60
                4568888888888888887654 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.001
      PRIMA1   6 sktvaekvtescqeacqcrrypplpppppppppprllslta 46 
                 s+t + +++   q+ c+   + p  +p+ p p p+ ls+  
  CDO70387.1  92 SQTSTVDAGVAHQNFCDHNFRYPQCSPTYPSPVPHRLSTHQ 132
                 778888888899999*9999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2977.09
//
Query:       CDO70388.1  [L=326]
Description: hypothetical protein BN946_scf184999.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   21.2   5.6      0.019   15.4   0.0    3.4  3  zf-H2C2_2  Zinc-finger double domain
     0.0042   17.5  11.7        0.1   13.1   1.8    3.4  3  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
        5.5    8.1   9.9        3.5    8.7   1.3    3.3  3  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.013        81       5      21 ..     220     240 ..     218     246 .. 0.68
   2 !   15.4   0.0   3.2e-06     0.019       1      25 [.     271     298 ..     271     299 .. 0.88
   3 ?    2.9   0.4     0.027   1.6e+02       2      12 ..     304     314 ..     302     323 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.013
   zf-H2C2_2   5 HirkHtgek.p.yeCp..lCd 21 
                 H r  ++++ p +eCp   Cd
  CDO70388.1 220 HARRRRQDTtPrFECPrtNCD 240
                 556555564367****99998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3.2e-06
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCp..lCdkaFk 25 
                 nL+ Hi + H+g++p+ C+   C  aF 
  CDO70388.1 271 NLKVHIDTvHKGDRPFACEvpDCTMAFG 298
                 8999**965*********9889999996 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.027
   zf-H2C2_2   2 LrrHirkHtge 12 
                 +r Hi kHt e
  CDO70388.1 304 YRHHISKHTDE 314
                 3456999**44 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.23   1.4e+03       1      11 [.     232     246 ..     232     250 .. 0.81
   2 !    9.3   0.2   0.00028       1.7       9      23 .]     265     280 ..     264     280 .. 0.94
   3 !   13.1   1.8   1.7e-05       0.1       1      23 []     286     311 ..     286     311 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.23
                 EEET..TTT..EEES CS
     zf-C2H2   1 ykCp..dCg..ksFk 11 
                 ++Cp   C+  k F+
  CDO70388.1 232 FECPrtNCDsgKFFS 246
                 899999999877776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00028
                 EESSHHHHHHHHHC.C CS
     zf-C2H2   9 sFkrksnLkrHirt.H 23 
                 +F r++nLk+Hi t H
  CDO70388.1 265 VFARSHNLKVHIDTvH 280
                 79**********9999 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.7e-05
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 + C+  dC++ F r+++L rH  + H
  CDO70388.1 286 FACEvpDCTMAFGRRHDLYRHHISkH 311
                 679999***************99888 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.66     4e+03       1      13 [.     232     247 ..     232     254 .. 0.68
   2 ?    3.5   0.2     0.029   1.7e+02       9      24 .]     265     280 ..     263     280 .. 0.92
   3 ?    8.7   1.3   0.00059       3.5       1      23 [.     286     311 ..     286     312 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.66
   zf-C2H2_4   1 fkCpi..C.gksFssk 13 
                 f+Cp   C ++ F s 
  CDO70388.1 232 FECPRtnCdSGKFFSE 247
                 7899888985555554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.029
   zf-C2H2_4   9 sFsskkaLlrHlkthH 24 
                 +F ++++L+ H+ t+H
  CDO70388.1 265 VFARSHNLKVHIDTVH 280
                 69999*********99 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00059
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlr.Hlkth 23 
                 f C++  C+  F ++++L r H+ +h
  CDO70388.1 286 FACEVpdCTMAFGRRHDLYRhHISKH 311
                 6788888**********855276666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2169.67
//
Query:       CDO70389.1  [L=159]
Description: hypothetical protein BN946_scf184999.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1119.44
//
Query:       CDO70390.1  [L=233]
Description: hypothetical protein BN946_scf184999.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1639.02
//
Query:       CDO70391.1  [L=683]
Description: hypothetical protein BN946_scf184999.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4847.67
//
Query:       CDO70392.1  [L=413]
Description: hypothetical protein BN946_scf184999.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-42  144.6  40.6    3.4e-36  125.0  20.2    2.5  2  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.22   11.2   1.1       0.48   10.1   0.2    2.0  2  COX7B          Cytochrome C oxidase chain VIIB


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0  20.2   3.7e-40   3.4e-36      51     283 ..       3     249 ..       1     253 [. 0.81
   2 !   25.0  12.6   8.5e-10   7.6e-06     319     424 ..     253     353 ..     249     354 .. 0.73

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 3.7e-40
  AA_permease_2  51 yaElssalprsgGiyvytkaafgkkva....flsawfnwfayvpvlasilsv.aasyllna.lgp..dlqgntwltyliaiaililvalinirgik 138
                    +aEl+sa p+sgG+y +t+ ++++++     ++++++n+++ v+++asi    a++  + a +g+  ++  ++ +t++++ a+++ +a+i+++g++
     CDO70392.1   3 MAELASAAPTSGGLYFWTHSLSSPRWRnllaWIVGYANTIGSVASVASIDWGcAVQITAAAsIGSgqTYSATNAQTFGVYTAVVLSHAVICCLGTR 98 
                    89**999**************7655555555*****************876634444433323325599999************************ PP

  AA_permease_2 139 esakiqnilgilkillpliiliilglitvdgggfsslstetdtffpn.gwp.g..vllgllivlwsfdGfesaanvseevkk..kdvpkaifigll 228
                     +a++q++ +il++ll l+++i+l+ +t +   +s +  + ++f+++ gwp g  ++l++l+ lw+++ f+s++++see+ +  + vp ai+++++
     CDO70392.1  99 LLARLQTVYVILNVLLCLAVIIALPAATPKEFRNSAS-YALGNFTNTsGWPdGyaFILSFLAPLWTICSFDSSVHISEEASNaaTAVPWAIVYAIG 193
                    **********************999999977444433.3444555555***85457***********************9998567********** PP

  AA_permease_2 229 ivlvlyllvniaflgvvpddeianlsn.lgsv.aalffeavggkvvaiivvilials 283
                    i++vl++ +n+a++++++ d  +  ++ +g++ a++ff+ +g + ++ +++ +++l+
     CDO70392.1 194 IAGVLGWAINVALAFCMGTDLDSLMDSpVGQPmAQIFFNSFG-QKGTLALWSIVVLV 249
                    ******************976554444377753699999988.66666666666555 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 8.5e-10
  AA_permease_2 319 gspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr.pgkilvaiigalfllfllvalffppkgpatqs 413
                     +p+++++++a++s ill l+++a ++a+n+++++s  +l+i  +l       + +++  ++  ++ ++v++i++l+ lf+ +++ fp+    + +
     CDO70392.1 253 RTPVNTVWFVAVFS-ILLGLLAFAGDSAINAIFAMSITALYIARFLGD-----NDFRPGPFNLgMWSAPVGAIAVLWMLFMGIVFLFPTSPNPAVP 342
                    59************.555666677778888888877655555444433.....334333333366778********************88555557 PP

  AA_permease_2 414 sliytiiltva 424
                     ++yt++++++
     CDO70392.1 343 DMNYTVVVLGG 353
                    9****999876 PP

>> COX7B  Cytochrome C oxidase chain VIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.93   8.3e+03      27      49 ..      72      93 ..      57      97 .. 0.54
   2 ?   10.1   0.2   5.3e-05      0.48      39      75 ..     347     383 ..     336     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.93
       COX7B 27 kkaspdfHdkyGnavlisGavfc 49
                + ++ ++   y ++vl   av+c
  CDO70392.1 72 SATNAQTFGVYTAVVLS-HAVIC 93
                44445555556555554.44444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 5.3e-05
       COX7B  39 navlisGavfcvavwvyvltqigieWnlsPvgrvtPk 75 
                 ++v+++G +++  +w y     g++W   Pv  ++  
  CDO70392.1 347 TVVVLGGVMIFSLIWYYFPKYGGVHWFQGPVPTIVKT 383
                 57899**************************988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3027.50
//
Query:       CDO70393.1  [L=596]
Description: hypothetical protein BN946_scf184999.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.9e-46  156.2   0.0    1.4e-45  155.7   0.0    1.2  1  Pkinase         Protein kinase domain
      6e-44  150.3   0.0    1.2e-43  149.3   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-07   31.6   1.0    2.4e-07   30.5   1.0    1.5  1  C1_1            Phorbol esters/diacylglycerol binding domain 
     0.0061   15.9   0.0     0.0097   15.3   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.012   15.5   2.2      0.023   14.6   2.2    1.5  1  PHD             PHD-finger
      0.015   15.2   0.0      0.034   14.1   0.0    1.5  1  APH             Phosphotransferase enzyme family
      0.047   12.5   0.0       0.11   11.3   0.0    1.5  2  Pkinase_fungal  Fungal protein kinase
      0.049   13.9   0.9      0.098   13.0   0.9    1.5  1  C1_2            C1 domain
      0.065   12.2   0.0       0.11   11.5   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.0     7e-49   1.4e-45       5     260 ..      19     260 ..      16     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 7e-49
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS.--HHHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgs.lseeeak 101
                 +klG+GsfG+Vyk v        A+K++  +++ +  +  + rE +++k+ +hpn+v +++  +  + +++++ ey+e+g+l  ++++k++ ++ +   
  CDO70393.1  19 KKLGSGSFGNVYKDV--------AIKEVLPSNDYDVAK-YFEREWRLMKEARHPNVVLYLGLSRApDGRIFIISEYIENGNLRMYIHDKSKpFPWRLRL 108
                 79**********977........********9999885.9**********************9994557789***************666648888888 PP

                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 ++a+ i ++l+ylH++++iHrDlK eN+L+  +g lKitDFG+a+ + ++++     +f+gt  Y++PE+l +ne++ ++D++slGvi+ e+ ++k   
  CDO70393.1 109 SFATDITRALAYLHARKCIHRDLKGENLLVTANGRLKITDFGFARIAARNEEetkRLTFCGTDSYMSPEILLGNEFDLPTDIFSLGVIFCEIAARKLAD 207
                 **********************************************999998888899**********************************9988877 PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                  ++ +++    ++d+           ++       ++++++ l  ++l++ p++R+  +++l+
  CDO70393.1 208 DNTFRRTAPFFNIDE----------DEVRRLASPGCPPSFIALALECLSQVPSQRPNTRMILD 260
                 744444444444444..........34555556678*********************999885 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0   6.1e-47   1.2e-43       5     258 ..      19     261 ..      16     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 6.1e-47
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkekeklt 101
                  kklG+G+fG+V++            +Va+K +  +++ +  + + +e ++mk+ +hpn+v +lg+    +++++i+ ey+++G+L+ ++++k ++++ 
   CDO70393.1  19 KKLGSGSFGNVYK------------DVAIKEVLPSNDYDVAKYFEREWRLMKEARHPNVVLYLGLSRaPDGRIFIISEYIENGNLRMYIHDK-SKPFP 103
                  6899999999974............7*************9**************************988999*******************9.***** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                   +  lsfa+++ ++++yL+++k++Hrdl   N L++ n   ki+DfG ar   +++e +k+ +      +m+pE+l  ++f   +D++s Gv+  Ei+
   CDO70393.1 104 WRLRLSFATDITRALAYLHARKCIHRDLKGENLLVTANGRLKITDFGFARIAARNEEETKRLTFCGTDSYMSPEILLGNEFDLPTDIFSLGVIFCEIA 201
                  ****************************************************9999999999999999****************************** PP

                  TTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 200 tlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                         ++++ +  + ++ +++ r  +   cp+++  l  +c+++ p++Rp+ + ++++
   CDO70393.1 202 ARKLADDNTFRRTAPFFNIdEDEVRRLASPGCPPSFIALALECLSQVPSQRPNTRMILDR 261
                  *999888888666655556478878778888**********************9988776 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   1.0   1.2e-10   2.4e-07      11      52 ..     527     566 ..     521     567 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
                 --B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS-SBTTC CS
        C1_1  11 ptfCkhCgeflwgkekqglkCswCkllvHkkChekvpkecgc 52 
                 +++C+ C + l  ++k+ l C++C+l+ H kC  ++p+ cg 
  CDO70393.1 527 SAKCDVCSKRL--GWKPVLECDDCGLRTHVKCGDLAPMDCGL 566
                 689********..***************************96 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.9e-06    0.0097      60     167 ..      52     150 ..      42     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.9e-06
         Kdo  60 rEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeee 157
                 rE+rl+k+ ++     p+ v +      +  r ++++e +e+  +L +++ + ++ ++ +l+     ++ r+ a lh+++  H+dl   n+l+ +++  
  CDO70393.1  52 REWRLMKEARH-----PNVVLYLGLSRAPDGRIFIISEYIENG-NLRMYIHDKSKpFPWRLRLSFATDITRALAYLHARKCIHRDLKGENLLVTANG-- 142
                 56666665544.....444555555556667889******995.7******9888999************************************999.. PP

         Kdo 158 eaeiwliDld 167
                   ++ + D+ 
  CDO70393.1 143 --RLKITDFG 150
                 ..66666764 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.2   1.2e-05     0.023       2      31 ..     530     558 ..     529     563 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSS CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClk 31 
                 C+vC+k     + ++ Cd+C+   H+kC +
  CDO70393.1 530 CDVCSK-RLGWKPVLECDDCGLRTHVKCGD 558
                 ******.78899****************76 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.034     146     199 ..     104     155 ..      82     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 146 eeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 ++l+  ++  + + l+   ++  +H+Dl+  Nllv+ ++gr+  + Df++a+++
  CDO70393.1 104 WRLRLSFATDITRALAYLHARKCIHRDLKGENLLVT-ANGRL-KITDFGFARIA 155
                 444444444444444445678889************.88998.89*****9875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.4e-05      0.11     313     396 ..     112     189 ..     106     200 .. 0.86
   2 ?   -3.8   0.0         2   3.9e+03     369     382 ..     275     288 ..     265     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.4e-05
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                      D  +++  L+   + +HrD   +N+l+t     ++ +  + D+ +a   +++++e ++ +  GT  +m+ e+l g+e     D
      CDO70393.1 112 TDITRALAYLH-ARKCIHRDLKGENLLVT-----ANGRLKITDFGFARIAARNEEETKRLTFCGTDSYMSPEILLGNEFDLPTD 189
                     57778889999.99***************.....7788999**********98889899999************9887655555 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2
  Pkinase_fungal 369 sgarertGTleFma 382
                     +++ ++ GT++Fm+
      CDO70393.1 275 EADDIHLGTVKFMS 288
                     3347899******7 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.9   4.9e-05     0.098      15      46 ..     524     556 ..     515     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
        C1_2  15 ssesfnCsaCgrkidgff.YsCseCdfslhvrC 46 
                    s +C++C +    +   +C+ C    hv+C
  CDO70393.1 524 TLLSAKCDVCSKRLGWKPvLECDDCGLRTHVKC 556
                 445689*******845559************** PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.11     230     263 ..     128     165 ..     122     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle....ssegkv 263
                    HRdL+ +n Lv +n+   + d+  +R+     ++++ +
     CDO70393.1 128 HRDLKGENLLVTANGRLKITDFGFARIAarneEETKRL 165
                    ***************************96544444445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4351.83
//
Query:       CDO70394.1  [L=426]
Description: hypothetical protein BN946_scf184999.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.4e-155  516.2   0.0   7.7e-155  516.0   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
    0.00014   21.4   0.0    0.00024   20.7   0.0    1.3  1  QueC             Queuosine biosynthesis protein QueC
  ------ inclusion threshold ------
      0.016   14.0   0.0      0.025   13.4   0.0    1.4  1  tRNA_Me_trans    tRNA methyl transferase


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  516.0   0.0  1.3e-158  7.7e-155       2     387 ..      10     404 ..       9     405 .. 0.98

  Alignments for each domain:
  == domain 1  score: 516.0 bits;  conditional E-value: 1.3e-158
  Arginosuc_synth   2 LaysGGlDtsviikllkeklgeeviavavdvGqeeedldevkekalklgavksvvvDakeefvedyifpaikanalYedrYllgtalaRPliak 95 
                      LaysGGlDts+i+++l e++ ++v a+++dvGqe ed++++++kal++ga+k+++ D k+efv + i+pa++an +Ye+ Yllgt+laRP+ia+
       CDO70394.1  10 LAYSGGLDTSCILAWLIEQG-YDVYAFMADVGQE-EDFEAARKKALAVGAKKFFLEDLKREFVTELIYPALQANCIYENVYLLGTSLARPVIAR 101
                      9******************9.*************.*********************************************************** PP

  Arginosuc_synth  96 klvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvevtkkkpysiDenllgrsieagi 184
                       +++va +eg++ v+hGctGkGnDqvRfe++++ l+Pd+kviaP+R +e++     R+  ++ya+ek+ipv++t +kp+s+Denl+++s+eagi
       CDO70394.1 102 GMMAVADREGCDFVSHGCTGKGNDQVRFELAFYGLKPDIKVIAPWRIPEFYnrfagRQALLAYAAEKQIPVQQTAAKPWSTDENLFHISYEAGI 195
                      ********************************************************************************************** PP

  Arginosuc_synth 185 LedpknappediyeltkdpakapdepeeveiefekGvPvald.....geelsvlelieklneiagkhGvGRiDivedRlvglksReiYeapaal 273
                      Ledp+++pp d+++lt dp++ap++p+ ++ief kG+Pv+++      e ++++e++ +ln++a+khG+GRiDive+R++g+ksR++Ye p+a+
       CDO70394.1 196 LEDPNTTPPADMWKLTVDPEQAPNTPQRISIEFTKGLPVKVTvpdekKEYTDPVEIFIALNHLARKHGIGRIDIVENRFIGVKSRGCYESPGAT 289
                      *****************************************999775555667***************************************** PP

  Arginosuc_synth 274 vLikahkdlekltlerevakfkkiveek.yaelvYkGlwfsPlkealdafiektqervtGtvrvklfkGsvvvlgReseeslYdeelasydeed 366
                      +L++ah dle ltl+r+v+ +++++ +   ++++Y+G wf+P++e + + i  +q+ v+G vr+kl+kG+v+++gR s+e lYde+ +s+de  
       CDO70394.1 290 ILRAAHVDLEGLTLDRNVRALRDQFVTIeLSKILYNGHWFTPEREFIVSSIPASQRTVNGVVRLKLYKGNVIIEGRYSDEGLYDEKQSSMDELG 383
                      **********************9876644***************************************************************** PP

  Arginosuc_synth 367 efdqkeaeGfikihglqakly 387
                       f++++++Gfi+i ++++k++
       CDO70394.1 384 GFEPTDTTGFIQIESIRIKKW 404
                      *****************9987 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     4e-08   0.00024       2      52 ..       8      58 ..       7      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4e-08
                EEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT- CS
        QueC  2 avvllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelg 52
                +++  SGGlD + +la+  ++g+ v+a   d gq ++ e    k++a  ++
  CDO70394.1  8 VLLAYSGGLDTSCILAWLIEQGYDVYAFMADVGQEEDFEAARKKALAVGAK 58
                56778******************************9999988888876555 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-06     0.025       2      42 ..       7      47 ..       6      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-06
  tRNA_Me_trans  2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeeg 42
                   +v+ a SgG D s  +a l eqgy+v +++  + +eed e 
     CDO70394.1  7 RVLLAYSGGLDTSCILAWLIEQGYDVYAFMADVGQEEDFEA 47
                   7999***********************99888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3267.13
//
Query:       CDO70395.1  [L=698]
Description: hypothetical protein BN946_scf184999.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.9e-118  394.0   0.0     8e-118  393.0   0.0    1.5  1  Noc2      Noc2p family


Domain annotation for each model (and alignments):
>> Noc2  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.0   0.0  4.5e-122    8e-118       2     299 .]     360     674 ..     359     674 .. 0.97

  Alignments for each domain:
  == domain 1  score: 393.0 bits;  conditional E-value: 4.5e-122
        Noc2   2 llelvlkkvYlalvknskftsvktlplinfmknsaveLygldeavsyqhafvyIrqLAihLRnalktkkkeayksvynWqfvhsldlWsrvlsaacsk. 99 
                 +++lvlk++Yl+lv+++k+ts++tlp in+mknsa+eL++ d+a+syqhaf yIrqLAihLRn++ktk+keayk+vynWq+vh++d+W+ v+++ac+k 
  CDO70395.1 360 IVDLVLKNTYLTLVRSCKSTSAHTLPAINLMKNSASELFCADHAASYQHAFGYIRQLAIHLRNSMKTKTKEAYKQVYNWQYVHCVDFWALVIARACDKq 458
                 789************************************************************************************************ PP

        Noc2 100 .......keselkpLiypLvqvilgaikLiptaryfPlrlhlirsLlrLsestgtfIPvaplllevLeskel.kkkpkkkstlkpldfevtlkvpksyl 190
                        +eselk+LiypLvqv+lga++Li +ar fP++lh++rs+l+L+++t++++P+ap+ll vL+s+   ++kpk+ stl+pldfe+++++p++yl
  CDO70395.1 459 alierggQESELKALIYPLVQVALGAARLIRNARSFPFHLHIVRSILHLARHTNVYVPLAPYLLPVLTSTLSaSSKPKP-STLRPLDFELNIRAPQQYL 556
                 *********************************************************************6553667788.9****************** PP

        Noc2 191 ktrvyqdglieevvellleylal..lsksiaFPElvlpvvvqLkrflkstk.......neklrkqlkqLvekleenskfieekRekvefspkdreevea 280
                 ktrvy++gl+ee   ll+eyla+  ++ si+FPE+v+p+v+ L++++k +k       ++k     k Lv+++ee+ +++e+kR+ v f+p ++ eve+
  CDO70395.1 557 KTRVYNEGLAEESAFLLAEYLASppVQGSIGFPEVVVPIVLLLRKAIKGSKsaqgklsKAKEAGIAKALVDRIEESERWVEQKRKGVAFAPGKMGEVER 655
                 **********************9999***********************99888888888888999********************************* PP

        Noc2 281 fekelksektPlgkyvksq 299
                 +e++lk e++Pl +yvk+q
  CDO70395.1 656 WEEDLKVEDSPLARYVKVQ 674
                 ****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4995.29
//
Query:       CDO70396.1  [L=94]
Description: hypothetical protein BN946_scf184999.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.056   13.1   0.0      0.056   13.1   0.0    1.1  1  TNRC6-PABC_bdg  TNRC6-PABC binding domain
       0.16   10.4   0.0       0.19   10.1   0.0    1.0  1  Ald_Xan_dh_C2   Molybdopterin-binding domain of aldehyde dehy


Domain annotation for each model (and alignments):
>> TNRC6-PABC_bdg  TNRC6-PABC binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.3e-06     0.056     116     175 ..       5      64 ..       1      85 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-06
  TNRC6-PABC_bdg 116 svnWpPe.frPGvPWkglqnidpetdpyvtPgsvlnglsint.irdvdhqllrdrnagpsss 175
                     ++nWp + frP v  k++    +e  p++tP+ v+ + +i++ + +  +++l++r   p+s 
      CDO70396.1   5 AANWPADpFRPTVQLKTFMESLAE-HPNLTPAAVRASEAIQNdVFKQ-KYMLSQRMLQPASY 64 
                     579*9755*********9987665.7**************9956555.67999888776665 PP

>> Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.2e-05      0.19     221     275 ..      19      76 ..      14      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.2e-05
                    HHHHHHHHHHHHT--HHHHHHHHBCECGCC.S.E..EETEESSS-HHHHHHHHHHHHT CS
  Ald_Xan_dh_C2 221 lErlmdelAeelgldplelRrrNlikpgeltp.y..gqpvydsgdlpelldklkessd 275
                    l ++m+ lAe+ +l p+ +R   +i+++ ++  y   q++ +  ++p+ + +l e++d
     CDO70396.1  19 LKTFMESLAEHPNLTPAAVRASEAIQNDVFKQkYmlSQRMLQPASYPQYYSRLVEAFD 76 
                    5679*********************998774433224558899********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 659.12
//
Query:       CDO70397.1  [L=628]
Description: hypothetical protein BN946_scf184999.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.062   11.5   0.0       0.24    9.5   0.0    1.8  2  HSP70     Hsp70 protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   1.3e-05      0.24     134     202 ..     301     385 ..     276     396 .. 0.81
   2 ?   -1.5   0.0     0.028   5.1e+02     319     375 ..     522     578 ..     503     584 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 1.3e-05
                 EEEEEEEXTTXXHHHHHHHHHHHHHTTX............EEEEEEEHHHHHHHHHH.TCCSS...SCEEEEEEEEXSSXEEEEE CS
       HSP70 134 tdavitvPaYfndaqRqatkdAgkiAGL............nvlRivNepTAaalaYG.ldkkd...kernvlvyDlGggtfdvSi 202
                 +d+ +tvPa ++ +  q ++dA+  AGL            + lRi+ ep Aaa+    l + +    ++n ++ D Gggt d   
  CDO70397.1 301 ADVWLTVPAAWDATGCQIMRDAAIAAGLvrsarpgdhgwrERLRIISEPEAAAVHCAnLTDVHklcPNQNFMICDAGGGTVDLAA 385
                 5778999*999999999999*9999999777777777777789**********965325444467789*************9875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.028
                 HCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHH CS
       HSP70 319 daklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvl 375
                 +++   + +d+++lvGG +    +  +v+  + k  + +  p  av +G  v a+v 
  CDO70397.1 522 QTRKVDQRLDALLLVGGFSASEYLYRKVQVRVHKWVHAQTSPARAVLKGVRVPAAVT 578
                 33334667999********99999999999999999999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4784.57
//
Query:       CDO70398.1  [L=492]
Description: hypothetical protein BN946_scf184999.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-77  259.6   0.0    5.5e-77  259.1   0.0    1.2  1  ALO            D-arabinono-1,4-lactone oxidase
    1.1e-26   93.2   0.1    4.5e-26   91.2   0.2    1.9  2  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> ALO  D-arabinono-1,4-lactone oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.1   0.0   6.1e-81   5.5e-77       1     260 []     213     474 ..     213     474 .. 0.99

  Alignments for each domain:
  == domain 1  score: 259.1 bits;  conditional E-value: 6.1e-81
         ALO   1 vtlrvvpaftlkskqevikfetllenwdellkssefirvwwfPytekavvwrankteepeeskprkslkdellgrlvyeallalsrifpsltplverfv 99 
                 vtl+  paf lk+ qe ++f+ ++ n+d++ +++e++r+wwfP ++ + v   n+t+ep+ s   ++l+ +++g++++++ll ++r++p l  ++ rf+
  CDO70398.1 213 VTLELEPAFLLKEVQENQRFDVVVGNLDSIARQAEHVRLWWFPQADVVRVSSSNRTNEPK-SPVGTWLWHSIVGYHLLQFLLFVARYVPILNIWLGRFM 310
                 8**********************************************************9.9************************************* PP

         ALO 100 fklqygkgdeavqdsyevfnmdclvsqfvnEwaiplekgpevLrelkaliekaa....elkvhfPievRcsnadrplLsvtndrdtlyinatmYrpfet 194
                 ++l  g + ++v+ds+++fn dc+++q+  Ewa+p + ++++Lr++++++e++     +l+ h+ +e+R+s+ad+++Ls++n++++++i++++++p++ 
  CDO70398.1 311 AWLAGG-KMVSVDDSHRIFNIDCKYPQYTTEWAVPYDRAQACLRDVRDWLEREFadpsGLRPHASFEIRFSAADDIWLSPSNGQLSCWIGVVQFKPYGL 408
                 ******.9********************************************9999******************************************* PP

         ALO 195 nvptekyfkafedimkkagGrPHWaKnflltaedlkelYpdlkkflkvRkklDPegvFlnewlerl 260
                 nvp++++f  fe+im k+gG+PHWaK + l +++l++lYp++++f  v +++DP+g+F n++++r+
  CDO70398.1 409 NVPYRELFARFEQIMIKYGGKPHWAKSHPLGPAELRRLYPRFDDFVRVLEAVDPQGIFRNPYVQRH 474
                 ***************************************************************985 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.2     5e-30   4.5e-26       1     139 []      54     189 ..      54     189 .. 0.98
   2 ?   -2.0   0.0       0.3   2.7e+03     114     133 ..     445     464 ..     441     467 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 5e-30
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    p  v+ pe+e +++ +l+la+++g +v++ G G+s ++ a+ t   +l++++ln+++e+++e++ ++++aG++l+dl++ la++gl+ + + gs++
     CDO70398.1  54 PLSVFVPETEHQCRLILELARREGKTVRTAGVGHSPSDLAC-TTEYMLRTEKLNKVIELNAEKRFVVAQAGIVLNDLHAVLAQHGLAMR-NLGSIS 147
                    56799***********************************8.**********************************************9.9***** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    ++t+GG++ t ++G+g      i++ v+ l ++ladG+ vr+s
     CDO70398.1 148 DQTLGGVVTTATHGTGLDFP-VISSDVRALVILLADGSRVRCS 189
                    ********************.*******************996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.3
                    EGG--HHGTEEEEEEEETTS CS
  FAD_binding_4 114 ekyGlirdnvlglevvladG 133
                    ++y  + d+v+ le+v+++G
     CDO70398.1 445 RLYPRFDDFVRVLEAVDPQG 464
                    66777899**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3370.62
//
Query:       CDO70399.1  [L=215]
Description: hypothetical protein BN946_scf184999.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-39  133.3   0.0    3.3e-28   98.1   0.0    2.1  2  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.9e-12   3.5e-08       1      53 [.      13      67 ..      13      70 .. 0.88
   2 !   98.1   0.0   1.8e-32   3.3e-28      54     138 ..     111     207 ..     108     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.9e-12
                HHHHHHH..HHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE- CS
      UQ_con  1 rlqkelk..elakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelef 53
                rl++e+k  + +  +  +++a++++++++f+w++li+gp+dtp+eggvF + l+f
  CDO70399.1 13 RLMTEYKqlTSQGAPDGMFTAGPISESDFFTWEALIVGPKDTPFEGGVFPAILTF 67
                7999***44445567889********************************99988 PP

  == domain 2  score: 98.1 bits;  conditional E-value: 1.8e-32
                 -TTTTTS--EEEESST-SCTTBETTSBB-CGGGS............TTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  54 pedYPlkpPkvkfvtkifHPnvdksGevcldiLk............eekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 p+dYPl+p k+kf  ++fHPn++++G+vc++iL+            +e+Wsp++++e+v+ls++s+laepn es++n++ +kl++++r+ey++ v++
  CDO70399.1 111 PSDYPLSPFKMKFDPPLFHPNIYPDGTVCISILHtpgddplqyeqaSERWSPVQSVEKVILSVISMLAEPNLESGANIDCCKLYRENRAEYERIVRQ 207
                 89*****************************************999888********************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 1438.01
//
Query:       CDO70400.1  [L=503]
Description: hypothetical protein BN946_scf184999.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3585.52
//
Query:       CDO70401.1  [L=176]
Description: hypothetical protein BN946_scf184999.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-45  152.0   0.0    8.7e-45  151.8   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.036   13.8   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.0   9.7e-49   8.7e-45       2     139 ..      18     166 ..      17     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.8 bits;  conditional E-value: 9.7e-49
                 HHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS............T CS
      UQ_con   2 lqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk............e 88 
                 l+++l+el+k++ +g+sa+   ++nl+ew+v+i+gp+dt+Yegg+Fk++l+fped+Pl+pPk++f+t+++HPn++++G vc++iL+             
  CDO70401.1  18 LRRQLTELTKHPVEGFSAD---ENNLYEWEVMIIGPPDTIYEGGFFKARLSFPEDFPLNPPKMRFITPMWHPNIYPDGLVCISILHppgedqygyedsG 113
                 678999999*******998...459*****************************************************************999999886 PP

                 TT--TTSHHHHHHHHHHHHH..HS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  89 ekWspaltlesvllsiqsLl..aepnpesplnkeaakllkkdreeykkkvkey 139
                 e+W p++t+es+lls++sLl  ++pn +sp+n++aak++++d e ykkkv++ 
  CDO70401.1 114 ERWLPVHTVESILLSVISLLssDKPNLDSPANVDAAKEIRTDFEGYKKKVRRL 166
                 67******************87789*************************875 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-06     0.036       9      78 ..      30      96 ..      22     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-06
   Prok-E2_B  9 aealaadelaakdgkkaierssvkt..sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCl 78
                 e+++ade + ++ +  i+++   t  +gg ++ rl +p++fpl pp+++   p    + p i++ +g +C 
  CDO70401.1 30 VEGFSADENNLYEWEVMIIGPP-DTiyEGGFFKARLSFPEDFPLNPPKMRFITPM---WHPNIYP-DGLVCI 96
                5677788888888888877743.33569***************************...*******.*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1390.21
//
Query:       CDO70402.1  [L=452]
Description: hypothetical protein BN946_scf184999.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-152  508.6   0.0   1.4e-152  508.4   0.0    1.0  1  UPF0261   Uncharacterised protein family (UPF0261)


Domain annotation for each model (and alignments):
>> UPF0261  Uncharacterised protein family (UPF0261)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.4   0.0  7.6e-157  1.4e-152       2     404 .]       5     434 ..       4     434 .. 0.95

  Alignments for each domain:
  == domain 1  score: 508.4 bits;  conditional E-value: 7.6e-157
     UPF0261   2 tvlligtlDTKleellflrelieeeg.vevlliDvgtreeekeaidisreevleaagkeaeee....lesldrgeaieamseaaaklvkely.eekidg 94 
                  ++++gt+DTK +ell++r+ + ++g v+v l+Dvg + +++ aidi++ ++l+ +++  + +    ++ l+rge+++a+se aa +++ l  +++++g
  CDO70402.1   5 CIAILGTCDTKINELLYVRDRLINTGhVRVKLVDVGRTPSTHPAIDITQPTILAMSASPYKPSapldVSLLPRGELVKALSERAAPVIAALAaTHELHG 103
                 79******************9999888*********77779************999988773335679999*********************7778*** PP

     UPF0261  95 vislGGsggtslataamralpiGlPKlivSTvAsgdvspyvgesDitlmysvvDiaGlNsilrkvLsnAaaaiaGmakaeekskeek.......eeeee 186
                 +i+lGGsgg++la+ +mr+lp+G+PKl+vST+A+gdv+p+vgesD++++ysvvDiaGlN+il  +L+nAa+aiaGma+a++++ +++       + e++
  CDO70402.1 104 LIALGGSGGSALAAGVMRRLPLGFPKLLVSTMAAGDVGPFVGESDVAMLYSVVDIAGLNDILCPILDNAASAIAGMARAYQTRLNAEatasespNGERK 202
                 **********************************************************************************99999899988777777 PP

     UPF0261 187 kplvaitmfGvttpavdairelLeeegyevlvFhAtGtGGramErLireglldavlDltttEladelvggvlsagpdRleaaaekgiPqvvsvGalDmv 285
                  +++aitmfGvttpav+++relL++  + +++FhAtG+GGramE Li++g++d+vlDltttEladelvggvlsagp+Rleaa ++g+Pqvvs+GalDmv
  CDO70402.1 203 TKRIAITMFGVTTPAVTKARELLARYRCTPYIFHATGAGGRAMEALIEQGFFDGVLDLTTTELADELVGGVLSAGPHRLEAASRAGVPQVVSLGALDMV 301
                 88***********************99************************************************************************ PP

     UPF0261 286 nfgaletvpekf..kgrklyehnpqvtlvrtsaeenrelgefiaeklnkakgp.......vrvllPkkGvsaldaeggpfedpeadealfealeeelke 375
                 nfg++++vpe+f  +gr+l+ehn++vtl+rt++ e + lg++iaekl  a ++       ++v++P++Gvs ld++g++f+dp+ad+al++al+++l+e
  CDO70402.1 302 NFGPRASVPERFvrAGRRLHEHNSSVTLMRTTVAESEILGRIIAEKLMGAGKRaptagekTEVWVPRGGVSVLDKQGQVFWDPDADDALVRALRRGLQE 400
                 ************7669*******************************7765555678889*************************************98 PP

     UPF0261 376 se.....ievvevdahindeeFaeavaeallell 404
                  +     i+vve + +in+++F e ++++l++l+
  CDO70402.1 401 VRddghkIRVVEREEDINHPAFVEGMVQSLVQLM 434
                 7777888***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3398.01
//
Query:       CDO70403.1  [L=221]
Description: hypothetical protein BN946_scf184999.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-89  298.0   1.4    5.8e-89  297.8   1.4    1.0  1  PEP_hydrolase    Phosphoenolpyruvate hydrolase-like
  ------ inclusion threshold ------
      0.094   13.3   0.3       0.17   12.4   0.3    1.4  1  Lactococcin_972  Bacteriocin (Lactococcin_972)


Domain annotation for each model (and alignments):
>> PEP_hydrolase  Phosphoenolpyruvate hydrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.8   1.4   6.5e-93   5.8e-89       4     185 ..      40     221 .]      37     221 .] 0.99

  Alignments for each domain:
  == domain 1  score: 297.8 bits;  conditional E-value: 6.5e-93
  PEP_hydrolase   4 krlrkkikkgkpiigagaGtGlsakaaeaggaDliliynsGrfrmaGrgslagllpygnaNeivvemakevlpvvketpvlaGvcatDpfrkleef 99 
                    +rlr++i++g +i+gagaG+Gl+ak++++ggaDli+iynsGr+rmaG gslagl+pyg+aN+ivv+makevlpvvk+  vlaGvcatDpfr++++f
     CDO70403.1  40 TRLRQTIAEGGTILGAGAGIGLTAKFVDKGGADLIVIYNSGRYRMAGLGSLAGLMPYGDANAIVVDMAKEVLPVVKDAGVLAGVCATDPFRSMPRF 135
                    79********************************************************************************************** PP

  PEP_hydrolase 100 lkelkelGfaGvqNfPtvglidgefrenleetglgyekEvelikkAheldllttayvfneeearamaeaGadvivahlGlttggsi 185
                    l+el+++Gf+Gvq fPtvglidg fr+nl etg+ y++Ev++i++A+ l+lltt+yvf+  +a+am++aG+dviv+h+Gltt+gsi
     CDO70403.1 136 LRELNSIGFCGVQKFPTVGLIDGAFRQNLAETGMYYSLEVDMIREARMLGLLTTPYVFTVADAEAMVRAGTDVIVVHMGLTTSGSI 221
                    ***********************************************************************************986 PP

>> Lactococcin_972  Bacteriocin (Lactococcin_972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   1.9e-05      0.17      16      42 ..      18      45 ..      11      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
  Lactococcin_972 16 vysnYyHgtkcHgstvvl.Gkrtrksea 42
                      +snYyH + +Hg  v++ + +tr +++
       CDO70403.1 18 STSNYYHTRVRHGPPVNReDAHTRLRQT 45
                     68**************998888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1798.85
//
Query:       CDO70404.1  [L=207]
Description: hypothetical protein BN946_scf184999.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-33  114.6  11.2      4e-33  114.2  11.2    1.1  1  Got1      Got1/Sft2-like family
     0.0011   18.7  10.1     0.0099   15.7   3.8    2.2  2  DUF2157   Predicted membrane protein (DUF2157)
     0.0037   15.6   3.5     0.0044   15.4   3.5    1.0  1  DUF2070   Predicted membrane protein (DUF2070)
  ------ inclusion threshold ------
      0.036   13.4   4.3      0.048   13.0   4.3    1.1  1  AgrB      Accessory gene regulator B
       0.65    8.7   4.9        1.8    7.2   4.9    1.7  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2  11.2   1.1e-36     4e-33       2     110 ..      84     192 ..      83     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 1.1e-36
        Got1   2 vllfllsllglpllflkprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsy 100
                 +++f++++l lp ++l+p+kFal ++lG++l+++++a+LiGp ++lk++fskerl+++i+yl+sl ltLy++l  +s++  ++++ivq++al+ y++ y
  CDO70404.1  84 AVCFFVAFLTLPWIALRPAKFALAFSLGSLLVMFGFAVLIGPINHLKHLFSKERLPFSIAYLASLGLTLYFSLGAHSYIGSMIGAIVQVVALVTYVAAY 182
                 79************************************************************************************************* PP

        Got1 101 iPggrsalkk 110
                 +Pgg+++l++
  CDO70404.1 183 FPGGTQTLRF 192
                 *******997 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.8   2.8e-06    0.0099      18      84 ..      53     122 ..      47     161 .. 0.73
   2 !    7.0   0.6    0.0013       4.6      39      73 ..     164     198 ..     150     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.8e-06
     DUF2157  18 laryeaeeresarrrsfleallvlGalllglGlilfvAan...Wqglsrlvkfllllvllllslllg.avl 84 
                  + ++ +e+e++   s+ e ll+ Ga l+g+++++fvA +   W +l   +kf+l+++l  l +++g avl
  CDO70404.1  53 RSSERSNEEEAYFALSRWERLLGFGACLIGAAVCFFVAFLtlpWIALR-PAKFALAFSLGSLLVMFGfAVL 122
                 566677777777556669*********************988999997.7899999887666666663333 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0013
     DUF2157  39 lvlGalllglGlilfvAanWqglsrlvkfllllvl 73 
                 +++Ga++ +++l++ vAa + g +++++f+  ++l
  CDO70404.1 164 SMIGAIVQVVALVTYVAAYFPGGTQTLRFGGQMAL 198
                 689**************************988776 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.5   1.2e-06    0.0044      38     149 ..      70     183 ..      45     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-06
     DUF2070  38 lfgillfglp......alvaflltlpvlrilggrltykrslflalltelivviisllaillsall...qalvllalvlslalvfalrllvlvavsdesl 127
                 ++++l fg         ++ ++ltlp++        ++ + f  ++++  +++++ +a+l+  +      ++   l +s+a  ++l l ++++++ +s+
  CDO70404.1  70 WERLLGFGACligaavCFFVAFLTLPWI-------ALRPAKFALAFSLGSLLVMFGFAVLIGPINhlkHLFSKERLPFSIAYLASLGLTLYFSLGAHSY 161
                 6666666666222222333333444444.......334443333344444444444444544444444667788999********************** PP

     DUF2070 128 lkavlpaliqpllailllvlyf 149
                 + +++ a++q ++++ ++ +yf
  CDO70404.1 162 IGSMIGAIVQVVALVTYVAAYF 183
                 **************99999994 PP

>> AgrB  Accessory gene regulator B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.3   1.3e-05     0.048      77     180 ..      78     172 ..      75     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
        AgrB  77 rClilslliflllillakllslslslllillliilliisliiilllaPvdtpnkpisskekkkklkilsiivllilliialllknekisnaillglllv 175
                  Cli   ++f+++ l + ++ l +  + +++ +  l++++ + +l+ P+++ ++  s++     + i+ + +l ++l ++l   +++i ++i       
  CDO70404.1  78 ACLIGAAVCFFVAFLTLPWIALRPAKFALAFSLGSLLVMFGFAVLIGPINHLKHLFSKER--LPFSIAYLASLGLTLYFSLGA-HSYIGSMI------G 167
                 6*********************999888888888888999999******88888776664..444444444444444444422.22233333......3 PP

        AgrB 176 avlql 180
                 a++q+
  CDO70404.1 168 AIVQV 172
                 33333 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.9   0.00051       1.8     349     430 ..      34     123 ..       5     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00051
     DUF2207 349 kakkfkkalkkwksavkk........kergyfdkkgkkklkklsalglgliilglilillallllvll.....lvfllilllillliaiivlllf 430
                  a+ f+++++++ +++          +     +++  +   + ++lg+g++++g ++++++++l  ++       f+l ++l+ ll+++++++l+
  CDO70404.1  34 SANPFSRFYNAIGNGYVPlrssersnE-----EEAYFALSRWERLLGFGACLIGAAVCFFVAFLTLPWialrpAKFALAFSLGSLLVMFGFAVLI 123
                 677788888888887777777555522.....333333334445888888888888888888888888899996666666666666655555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1369.25
//
Query:       CDO70405.1  [L=2118]
Description: hypothetical protein BN946_scf184999.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-249  830.4   0.0   3.7e-249  830.0   0.0    1.0  1  Nup192    Nuclear pore complex scaffold, nucleoporins 186/192


Domain annotation for each model (and alignments):
>> Nup192  Nuclear pore complex scaffold, nucleoporins 186/192/205
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  830.0   0.0  2.1e-253  3.7e-249      12    1684 ..      10    1792 ..       2    1806 .. 0.85

  Alignments for each domain:
  == domain 1  score: 830.0 bits;  conditional E-value: 2.1e-253
                  HHHHHHTT.XT..THHHHHHHHHHTHHHHHHTTXXXXXXHHHHHCHCC..XSEEEETTE.EEEXXHHHHHHHHHHHHHHTXXHHHHHHHHHHHCTHH CS
      Nup192   12 sieaassn.pe..sldelelllkklkqdLknllknppkneksRsqlkkektgkitlsdgseyklnqefiqealiLSdeldLdElaaaeLlltaqeqq 105 
                  ++++a s+       +e+ + l ++k++L nl +  p+n ++  +l++   gki ++++ ++ +n +f+ +a+ +S+ ld +E  +a Ll++  +q+
  CDO70405.1   10 ILQSAFSSrGLpnGEQEFFEVLISHKPQLVNLYDVGPRNPQEQRELES---GKIVINGR-SVAVNADFARQAVFISQQLDCSERHVAGLLQEVMAQN 102 
                  444443332113477889999*************************77...*****999.999********************************** PP

                  H.HTTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHT..XTTSXH...........TTXXXXXX....XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      Nup192  106 ankpglslgevAvllYydrrkyilqiLryllqvaseeeedeek...........llsswste....atklvtnileslkeikqllsklkdlldkadv 187 
                  +n    + +e+A+l ++ rr+   ++Lry+l++a+  e  + +                  e     ++  t +  ++k   q++ ++ + l+ka+ 
  CDO70405.1  103 PNFTPEQCIEAAILEFHLRRRETADCLRYILEAAEAAERADAPplcyridqfvrQ------EliqpSGRAGTGLSLAMKIF-QEIHSVGNALNKAQQ 192 
                  ********************************77777765555988876654320......13345555555555555555.7779999999***** PP

                  HHHHSXXTTHHHHHHHH.....HHHHHHHHHHHHHHHHHHHTTXXXHHHHHHHHHH.HHHXXXXSHHHHHHHHHHHHHHTSSSSXXXHHHHHHHHHH CS
      Nup192  188 lkeiqknrflgsikfrr.....dlLekehelLaqilfglvaqsglekedilkllkhLakkldknDdltlhllpallaafssledlsvledvrelhek 279 
                  ++++ +++ + +++ ++     d L+   e+L+ +         l++++i k++++L++  +    ++ +llp++laaf +  d  + ++  + +++
  CDO70405.1  193 ARQSARSETVAPSQGANaglgvDVLNARCESLSRMGL-------LSSNEIPKIVDWLSA--NPRHPMVYYLLPVILAAF-DIVD--PNSKGGQARKN 277 
                  ***9999999999999977777888888888877644.......44467*******755..88999*************.2222..34444556666 PP

                  HTSSSTTSSSHH................HHHHHHHHHHHHHGGGHHHHHHHHHHHH..........HHHHHTTHHHHHHHHHHHHSXXSSXXGGGTT CS
      Nup192  280 itkrleeeplvsdee...idlskwklkglkaaiklvflleligwckqepeertkkfdfkedieklieeaiedgafefllsvaaetsakewedslryd 373 
                  ++++    +lv + +     +++w+ +glka+i l + l+l ++ +++p+  ++    +e+ e  i  a+++  f++l + ++  ++k+   +++  
  CDO70405.1  278 LFADG---SLVAEMKrrlDVSKEWAEPGLKATILLKWTLFLTSMRRADPSLEITDGFKSEELETQIWNAVQGDCFTYLARALMLLEKKQSGYPSTSY 371 
                  66666...666655566555679*********************9999999999997889999******************9999997777777777 PP

                  TTXXSXXXSXXXXSXSXXXXHHHHHHHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHH..HHXTTS.........................TXXXHHH CS
      Nup192  374 frslLqrkiprltpeklllseefeefllrrlhtlitdfIsnmafvLtkLRdreedsllsveslqqegleppanlee............diaqkadLE 458 
                    s+L      l  e     ++f+  +l+ +++l+++ I+++ + L+k+++r ed ll++ +  ++++  ++ + +                + d+ 
  CDO70405.1  372 ASSVLSLTEQDLQVEL--PADDFKPVILEAFESLVRSLITQASSELRKIKQRQEDLLLAGARTDRTRMFRSSIQPNasrsggadadkpATPPRNDMA 466 
                  7777765555544332..47***************************************9999887655444443456688*****99444567*** PP

                  HHHHHHHHHHTTXH.HHHHHHH.................SXTTSHHHHHHHHH..TSSXXHHHHHH.HHHHHHTTXSSHHHHHHHHHHHCX...... CS
      Nup192  459 rfllliaylYenrp.elaleFW.................sdkesnlygFiewa..ssllpsplika.flkMLssLssgeenaraafnlLkd...... 528 
                   ++  i  lY   p e al FW                 +  + +lygF++w+  s  + +  +++  + ML++L++g++++  a+n+L        
  CDO70405.1  467 MLYSFIGMLYTLLPeEKALHFWgagtvvpglrpsyaeqlDLSSGKLYGFLQWSiwSTQARDIDMSMaLYDMLAGLAKGQQCSELAYNYLARgggevv 563 
                  **************9********************998744599********944577788889989************************777777 PP

                  ......TTXSSXSSTTTBXXSHHHHHHHHHHHHHHH.XXXX.....XX.....XXXXXXXX..........XXXSXXXHHHHHHHHHHHHHHHHHHH CS
      Nup192  529 ......nsssagkkkrsssvswdhifksLsyYidkl.qepe.....ndl....klrqkkqe.neesiyrsraieeeleeeeivflsaflrLissvak 608 
                        + +s+ + +   ++sw++if+ L++++++  q+ +     +++    +   ++q+ +++   ++ +++++++++e+ + +aflrL+s va+
  CDO70405.1  564 pgaavpS-NSSVHYNTGPAISWSSIFSLLESWATAGgQNRTsgvpgQSVgphgQGLPANQSwQGQASPQRPPQQIAISQQEVLLAQAFLRLLSVVAT 659 
                  7777742.33489999********************88833366654447666444445557777788888999*********************** PP

                  HXHHHHHHHHCXTTTXHHHHHHHHHTSSXXHHHHHHHHHHHHHTTS.....XXHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXX..XHHHHHHHH CS
      Nup192  609 nseearkallenaswqfldvllgLlsckvptpLkaailktLsaLvk.....kseeeaakiWrsLDrwifkgsqllptvpttsakkq..sgsleekea 698 
                  +s +ar  ++ +a ++++++l++L+   +p++Lk+ai++tLsa+          e  +++W+ ++r+ + ++ +      ++++ +  +g+  e+++
  CDO70405.1  660 YSVTARVTICGHARFRAIPTLVSLVPLGIPLELKGAIFETLSAFCApgagpAGVEICRSVWTLMERLEVINVRIAHG---PGSVLPvgRGVELELDE 753 
                  *************************999****************997744444455*********888888887666...555555579******** PP

                  HHHHTSSHHHHHHHHHHHHHHTSXTTXSSSX......XSSXSSXTTTTTTTSSSSSHHHHHHHHH.HHHT.GGGGXXXHHHHHHHHHHHHHHHHHHH CS
      Nup192  699 fesrletysevraflqLlkaLlqplesesea......kgklpfPedLGagyRkpGiepYldfvldevflk.strdlkdpaekwelqlsclelletsL 788 
                  +e   + y+ +  fl+Ll +L+  ++           +   ++Pe+LGa yR+pGi p+++fv+d+vf++ s+r++ +p+++w++ + cl ++e++L
  CDO70405.1  754 VEAAYRLYPSTIPFLHLLATLIHTPKRIPLRervvdpTPINTIPETLGAPYRTPGIGPFVSFVVDNVFARiSNREYLRPSDRWRMNDLCLCFIERCL 850 
                  **********************755554433889777777789****************************************************** PP

                  HTSXHHHHHHHCCTTTTSSSSTTCHHHHHHHHHSTHHHHHHHHTSHHHHHHHHHHHXXXHHHHHH..SXTTSHHHHHHHHHHHHHHHHHHHHHHHHT CS
      Nup192  789 asfdpslllfseqaginldslvstsdlatyvklhgfaavlnllfkekvlklllkiieegvdelds.yasgkseleelvllaLeilekvLelQetfle 884 
                  asfd + l+ + +          ++ + +++ ++gf ++ +ll+ + +  ++l+ + +g d +++ +a+++ ++ +++ ++L+i+++vLe+Q+  l+
  CDO70405.1  851 ASFDLESLVTTIEELQPT-----KEAVVQLAIHPGFDLMKRLLTSSPLQASILSYLVQGLDGFEKgLAEEEPYYRTTIIRVLRIVHRVLEVQDILLD 942 
                  ********9988877733.....38899*************************************88999*************************** PP

                  CCHHHHHHHHCXXXXXXXSXTTX.SSHHHHHCCXTHHHHHHHHHGGGTX.HHHHHHHHHHHHHHTTXTTGGTSSXXXXXXSXHHHHHHHHSSXHHHH CS
      Nup192  885 ellpilkkkeniyrpknvgsagl.ssfedillfnLslvlnialYvgldn.peialaslkiLekissspkvsassasrllkknklltvfesvdeserI 979 
                  ++lp+l + ++     +v   ++   f+++l f  + v  ia Y+ +    e+ l s+ki++ ++ss  +           ++l  + ++++es+rI
  CDO70405.1  943 VFLPLLSELNEPSLTGEVPPISYfIRFDQALSFSADYVPSIAAYICHPAyAELMLLSVKIISILASSTAL-----------SHLALLIDRSSESIRI 1028
                  ******96666666677766665369**********************99*****************777...........89999*********** PP

                  HHHHHHHHHSXX.XTTTTTSXHH...................HHHHHHHHHHHHHHHHSSTTSXXHHHHHTTXXXBTBXXXX...TTSTTTTTXSHH CS
      Nup192  980 kqgfveqLeaeiedeeqeeeeea...................lqiKlaILdlLnsnLsasskeptvahfLLGfdvrndlslgneqqsgviasqssll 1057
                   +g+ + L++ + ++ +e+e +a                    +i+laILdl+++n+++s+  p++ahfLL   ++   + + +q++ ++  q+s++
  CDO70405.1 1029 LNGYLRALDTHVVEDVEEAETTAeqstgagapdvsgqsdlltQAIRLAILDLFIQNTDSSKPFPNIAHFLLLGGISP--DKQ-IQDPHALGAQRSCV 1122
                  **********99766655555558899******************************************99333334..444.55899********* PP

                  HHHHHHHTT.XXXXXTTSX.........BXHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT..THHHHHHHHXXXXXTTXXBTTBXTTS..... CS
      Nup192 1058 hsllslles.slelisegdksrgs...kideaparLaekileillkLcrnpltseltLryLrete.fllrhllslppkidentlWngqefdgslss. 1148
                  hs+l+ll+  +++l s+g+++r+s    +   ++ +ae++++++++Lc++  tse t+ryLr+ e f+ rhl+++p+k+  +++         + + 
  CDO70405.1 1123 HSILDLLNFgVPRLRSKGNRRRHSlgePLFLSLPAFAERCYHVIYQLCQHAYTSESTMRYLRTREdFFARHLAAIPFKVPVMEQ-------PPAIEv 1212
                  *******86145555666989999998899*********************************99*****************99.......333334 PP

                  ...TTSTTSTTHHHHHHHHHHHHHHHHHHHHHTTTTTSSSXHHHHHHHHHHHHTEEXS..................S.SSE..XXXTTTSXXSXXTT CS
      Nup192 1149 ..nkeflssesigallsFlnqrslllqylslelhslsqsgstskkkrlvdlLlgsnta..................e.eeengspkildlLdvlnfe 1224
                     +     +++++l+sFl+ rs++l++++l+lh l+++g++  +++l++l++gs+++                  e +  +++ ++++l ++l+f+
  CDO70405.1 1213 vyGDGSRIITTVTTLASFLKLRSWILDLVALDLHVLTNRGHQKSVSELLELMFGSEEDyledgvdnweselfkpfhEvG--QSHLRMIELVQSLDFD 1307
                  66666678999*******************************************9955699999988887776643223..4599************ PP

                  SXGGSXXXXHHHHH....HTTXXXXBXXXXX.XXXBXXHHHHHHHHHHHHHH..XSSXSHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      Nup192 1225 fkekeeqpqleffdkvnlellLdkceekdadsgnklydisklekllrleksslkqlvqseskagqekeimaEiekileyavklnrqkelreaqlkvL 1321
                  +++++  +  + ++ +  +l+L++c + d++ g +++d + l +ll+l k++l+ l+   + ++ ++ ++aE ++ile  +  n ++++r+a+    
  CDO70405.1 1308 WSDSLVAT-PQELN-FLGQLNLQSCLRVDES-GCEVVDRTALLSLLTLAKRTLY-LQGRITSKAHAETLEAESNYILESCAIENHRRKIRHATATGY 1400
                  ***76655.55555.4449******766665.999**************98888.666666666777899*************************** PP

                  HHHHHHHHHHHH..HSXXXSHHHHHHHHHHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHTTXXXXXXXX...XXXXH..HHHHHHCCTTHHHHHHH CS
      Nup192 1322 hsWvqLvqvlvs..dgelsseersnfilevlqkilpkindyveediqfaeelaslvsvllfdlyeklrqsikkseeqk..etgnlsserLlqlfktc 1414
                  ++W+ L+++ +    + l+ ++r+n+++++l+ +lp +  + + + ++a  la+ + +++ +l e  r++   ++     e+g+l++erL  l++ +
  CDO70405.1 1401 EAWRRLLDMALMkcFDRLPFDRRENMLFDLLH-VLPTLLRSSNVEESTAVLLAETILSTITKLREDRRHQVLLQSAGGdaEAGALPVERLSILLRSI 1496
                  ***********988899************997.789996777777777777777777777777777777765554444889999************* PP

                  HHHHHHT-S-HHHHHHHHHHHHHHHHT.........................TT---..................HHHHH........HHHHHHHHH CS
      Nup192 1415 iegIlssestqkLRsdlYvlllnyLqi.........................easet..................skanlslkee.slkkeilqiik 1467
                  +++I+  +  + +R +lY++l+nyL+                          +   +                       s  ++  l   ++ ++k
  CDO70405.1 1497 LDCIMDNNHIELVRGNLYAALVNYLHLilhdevpdsvnegsfaglasslslaA---SrddlifsdsmsvasvssqL--GRSPAQSaGLIVTSIAVLK 1588
                  ***************************88888777777766666666666651...04456666667777655432..22223345999999***** PP

                  HHTHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH.TT---H.HHHHHHHTTHHHHHHHGGGGHHHHHH---------------HHHHHHHHHHHHH CS
      Nup192 1468 sygekLieviCnDaitgegvcritalllLdsLvelsssnksnfilellvknnyLkllvrslkrtdealqeilkpdpesldalyetvfesklalLirl 1564
                   + e+L+ ++ +Dai+g +v+++ a++lLdsLv+ls  +k+++ l +l+++++L+ +vr lk++d +lq++lkpdp+ l++l  +v+e+k++lL+r+
  CDO70405.1 1589 PIMERLVAIVSRDAIDGTEVWKTVAFMLLDSLVRLSRWEKHSTPLAALARQGFLSGFVRGLKESDLLLQAVLKPDPDDLNPL--YVYEAKMSLLVRM 1683
                  ***********************************8888*******************************************..************* PP

                  HTSHHHHHHHHHTTHHHHHHHHTSSSS-SS---...--S-SS.HHHHH...HHHHHHHHHHHHHHHHHHHTT-STT...HHHHHHHHHHTTTHHHHH CS
      Nup192 1565 AqtrkGAeqLLqnklfsvlkeckflaidPDlglkinsldnpl.lskalnnteryfellvpvlqLitaillSlGssnksaieqvrklLkahrdlvvgv 1660
                  Aqtr+GAe+LL+++++ +l++c++l+++P+   +   ld+   l++a+   +ry++l++p+lqL++ +l++lG+++  a+++++++L+ahrd+ + +
  CDO70405.1 1684 AQTRQGAERLLESRVLPILADCDYLDARPEA--DQAFLDRDSfLPSAV---QRYHQLFMPALQLVSGMLITLGPKHTTAASHALQFLSAHRDTAIIL 1775
                  *******************************..6668999999****9...9********************************************* PP

                  HHHTT....---HHHHHHHHHHHH CS
      Nup192 1661 LKrdalpesklgkeeeeegLkela 1684
                  LK ++  e +l+       ++e+ 
  CDO70405.1 1776 LKMEV-DELSLS------VMEEIR 1792
                  **999.555555......333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.39s 00:00:01.56 Elapsed: 00:00:00.53
# Mc/sec: 12041.25
//
Query:       CDO70406.1  [L=180]
Description: hypothetical protein BN946_scf184999.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-16   59.8   0.0    3.6e-16   59.4   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.9e-10   39.4   0.0    6.4e-10   39.1   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.6e-10   39.1   0.1    7.9e-10   38.6   0.1    1.1  1  FR47             FR47-like protein
    1.2e-09   38.4   0.0    1.6e-09   38.0   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.1e-06   28.4   0.0    2.8e-06   28.0   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    4.9e-06   26.6   0.1    6.9e-06   26.2   0.1    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    4.3e-05   23.2   0.0    6.5e-05   22.6   0.0    1.3  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    7.6e-05   22.9   0.0      9e-05   22.7   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.014   15.5   0.1      0.024   14.7   0.1    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.077   12.7   0.2       0.11   12.3   0.2    1.2  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
       0.14   12.0   0.0       0.18   11.7   0.0    1.2  1  NMT              Myristoyl-CoA:protein N-myristoyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   2.2e-19   3.6e-16      28     117 .]      20     113 ..       3     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 2.2e-19
                     HHSTTCEEEE...EEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllv...aeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     f ++ ++l +    +   e++G + +++  + e+++++yi  l V++++r++G++s+L+++ +e ++++g++++vl++e dn aa  lYe lGF
      CDO70406.1  20 FLQQWPHLAFlayPSQSSEPVGVVVCKQSMHrERTKRGYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGVEEVVLETEYDNSAALSLYESLGF 113
                     3333333333222333388**********************************************************************99**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.9e-13   6.4e-10      39     111 ..      36     118 ..      16     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.9e-13
  Acetyltransf_10  39 ggkivGvi....el.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavge 111
                      + ++vGv+    ++ r++    +i++l V++++r++Gi++ L+ + +e ++k+g ++  l+ + ++ +a ++Ye+lGF + ++
       CDO70406.1  36 SSEPVGVVvckqSMhRERTkrgYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGVEEvVLETEYDNsAALSLYESLGFMREKR 118
                      5678888855554443333788**********************************99999999999***********88766 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   4.8e-13   7.9e-10      17      82 ..      52     118 ..      45     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.8e-13
                 EE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47  17 lrkdggelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfekiee 82 
                  r + g++ +l v+++ r+rG +s lv++ ++ + + g ++v+l +  +N+++ +lye+lGf   + 
  CDO70406.1  52 ERTKRGYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGvEEVVLETEYDNSAALSLYESLGFMREKR 118
                 67788*******************************883667788999**************87655 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0     1e-12   1.6e-09      12      75 ..      37     114 ..      14     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1e-12
                     TEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEE.EEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld.......aeitrlaVdpeyrgkGiGraLlea.ae....kgiile.qlel..naekaikfYeklGFe 75 
                      ++vG ++++ +        ++i  l V++++r++Gi++ L++  +e    +g++ e +le+  ++++a+++Ye+lGF 
      CDO70406.1  37 SEPVGVVVCKQSMhrertkrGYIAMLSVHKNWRKRGIASTLVRQtIEvmkkHGVE-EvVLETeyDNSAALSLYESLGFM 114
                     677888777777788777777777799***************9642244457755.333333433349999*******6 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.7e-09   2.8e-06      62     137 ..      35     113 ..       7     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.7e-09
  Acetyltransf_3  62 dtgv.iGsvglrdleeedee..aelgymlapsfwgk.GyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     ++++ +G+v + +  +++++  + + ++  ++ w+k G+a+  vr+ +e++ +++g+e++v +++ +N+a   ++e+lGf
      CDO70406.1  35 QSSEpVGVVVCKQSMHRERTkrGYIAMLSVHKNWRKrGIASTLVRQTIEVM-KKHGVEEVVLETEYDNSAALSLYESLGF 113
                     3335599998887777665345555544445545555**************.8888***********************9 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   4.2e-09   6.9e-06      64     125 ..      47     113 ..      39     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.2e-09
                     EEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT- CS
  Acetyltransf_9  64 lnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGy 125
                      +++ +++k +++++ +v+ + r+rg++s L+++++e m+++g++ ++l       ++ ++Y+++G+
      CDO70406.1  47 QSMHRERTKRGYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGVEEVVLETeydnsAALSLYESLGF 113
                     5677789999***********************************9999988877666788888887 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     4e-08   6.5e-05      89     142 ..      66     118 ..      42     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4e-08
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     ++ r++g++++l+r+ ++ + ++ +++ vv+E +++N +a++l+e++Gf +ek+
      CDO70406.1  66 KNWRKRGIASTLVRQTIEVMKKH-GVEEVVLETEYDNSAALSLYESLGFMREKR 118
                     67899************998777.*************************99986 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.5e-08     9e-05      56     144 ..      34     123 ..       5     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.5e-08
  Acetyltransf_4  56 e.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgifkkci 144
                       s + vG    +q   r +++ + + ++ +++  +k+g+++ l+   ++v+k+ ++e+ + e+ ++n+++  ++++lGF  ++++++++
      CDO70406.1  34 SqSSEPVGVVVCKQSMHRERTKRGYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGVEEVVLETEYDNSAALSLYESLGFMREKRLYRFY 123
                     3578899999999999999999999999999999**********************************************9999988876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.5e-05     0.024      19      58 ..      51      90 ..      17     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
  Acetyltransf_CG 19 vrkegvldfthTeVpeelrGkGiAkkLvkaalddareegl 58
                     ++++++  +    V++  r +GiA+ Lv++ ++ ++++g 
       CDO70406.1 51 RERTKRGYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGV 90
                     445556667777899***********************97 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.5e-05      0.11      60     127 ..      55     120 ..      48     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.5e-05
        PanZ  60 keaelsdlcVRevTRrRGVgsyLleearrqa..Pevkswvlaeedvkeldlavlqaflealgfaaesegy 127
                 k + +  l V +  R+RG++s L+ ++ + +    v++ vl +e     d++++ ++ e+lgf +e+ +y
  CDO70406.1  55 KRGYIAMLSVHKNWRKRGIASTLVRQTIEVMkkHGVEEVVLETEY----DNSAALSLYESLGFMREKRLY 120
                 56788999****************999887733456666666655....455666777888887777666 PP

>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.18     100     142 ..      48      90 ..      12     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 EETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT- CS
         NMT 100 rvrkkvlklveinfLcvhkklRskrlapvlikEitRrvnlkgi 142
                 +++++ +k   i  L+vhk+ R++ +a  l++     ++++g+
  CDO70406.1  48 SMHRERTKRGYIAMLSVHKNWRKRGIASTLVRQTIEVMKKHGV 90 
                 34557788899********************966555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1166.42
//
Query:       CDO70407.1  [L=1043]
Description: hypothetical protein BN946_scf184999.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.5e-264  876.1   7.2   1.1e-263  875.9   7.2    1.1  1  HSP70     Hsp70 protein
    1.5e-19   70.0   0.5    8.4e-19   67.5   0.2    2.0  2  MreB_Mbl  MreB/Mbl protein
     0.0036   16.4   0.7       0.12   11.3   0.5    2.2  2  DDR       Diol dehydratase reactivase ATPase-like domain
     0.0073   16.6   0.0      0.018   15.4   0.0    1.6  1  4HBT      Thioesterase superfamily
  ------ inclusion threshold ------
      0.029   14.1   0.0       0.09   12.5   0.0    1.9  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
       0.11   13.3   0.3          6    7.7   0.1    3.0  2  FIVAR     FIVAR domain
       0.16   12.5   7.3          6    7.4   0.1    3.4  3  Spectrin  Spectrin repeat


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  875.9   7.2  4.4e-267  1.1e-263       1     599 []      49     653 ..      49     653 .. 0.99

  Alignments for each domain:
  == domain 1  score: 875.9 bits;  conditional E-value: 4.4e-267
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 viGiDLGtt+s+v+v +gg++e+ian++g+r+tPs v+Ft++erlvG+aAk++  +np+ntvf++KrliGrkf+dpevq+++k++p+kv +k  gk+vv
  CDO70407.1  49 VIGIDLGTTYSCVGVQRGGRVEIIANDQGHRITPSWVSFTDEERLVGDAAKNAFHSNPENTVFDAKRLIGRKFDDPEVQRDMKHWPFKVINK-SGKPVV 146
                 79****************************************************************************************99.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGgg 196
                 +v++ ge  +ftpe+isamvL k+ketae+ylg++vt+av+tvPaYfndaqRqatkdAg+iAGL+vlRi+NepTAaa+aYGldkk  e++++vyDlGgg
  CDO70407.1 147 QVKYRGElrEFTPEEISAMVLGKMKETAESYLGRTVTHAVVTVPAYFNDAQRQATKDAGTIAGLQVLRIINEPTAAAIAYGLDKKGGESQIIVYDLGGG 245
                 *************************************************************************************************** PP

                 XEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEH CS
       HSP70 197 tfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsR 295
                 tfdvS+l++++Gvfev+aTagDthlGGedfD++++++lv+++kkk+g d+s + +al +lk+++ekaK++LSs  q+++++eie++++ g+d+se+l+R
  CDO70407.1 246 TFDVSLLSIDDGVFEVLATAGDTHLGGEDFDNRVIDYLVKQYKKKTGADVSGNLRALGKLKREVEKAKRTLSS--QQSTRIEIEAFEN-GNDFSETLTR 341
                 *************************************************************************..7888899999999.********** PP

                 HHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-E CS
       HSP70 296 akfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLsl 394
                 akfeel++dl+++t++pve++lkda+lkke+ide+vlvGGstRiPkvq+l+ke+fgkepsk++npDeava+GAAvq+g+l+g+e+  d++l Dv++L+l
  CDO70407.1 342 AKFEELNMDLFRKTMKPVEQVLKDANLKKEDIDEIVLVGGSTRIPKVQQLLKEYFGKEPSKGINPDEAVAYGAAVQGGILAGDESLGDVVLVDVNALTL 440
                 *************************************************************************************************** PP

                 EEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEE CS
       HSP70 395 gietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeee 493
                 giet+ggvmtk+i+rnt+ipt+ksq+fstaadnq++v i+v++ger+l+kdn+llg+fel+gippaprGvpqieVtf++danGi+++sa dk+tgk+e+
  CDO70407.1 441 GIETTGGVMTKIIPRNTVIPTRKSQIFSTAADNQQTVLIQVYEGERSLTKDNNLLGKFELSGIPPAPRGVPQIEVTFEVDANGIMKISAVDKGTGKSES 539
                 *************************************************************************************************** PP

                 EEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHH CS
       HSP70 494 itieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee...aekvseaek....ekvesaieeLkeeleeeekeeieakte 584
                 iti++++g ls eeie+mvk+aee+a+ed++++++iea n++ ++vy l+++l+++   + k+++++k    ++v++++++++e+++++ +e++e+k+ 
  CDO70407.1 540 ITITNEKGrLSPEEIERMVKEAEEFAAEDEAQRKRIEALNSLSSFVYGLKTQLADQdglGGKLEDEDKkailDAVKETTDWIEEHGQTATAEDLEEKLA 638
                 ********9***********************************************999899999999899999************************* PP

                 HHHHHHHHHHHHHHH CS
       HSP70 585 elkkvvekiaeklye 599
                 ++++vv++i++kly+
  CDO70407.1 639 DVQSVVTPITSKLYQ 653
                 ***********9986 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.14   3.6e+02       4      22 ..      50      68 ..      48     103 .. 0.86
   2 !   67.5   0.2   3.3e-22   8.4e-19      92     316 ..     181     415 ..     158     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.14
                EEEEE-SSEEEEEETTTEE CS
    MreB_Mbl  4 lgiDLGtantlvyvkgkgi 22
                +giDLGt+   v v+  g 
  CDO70407.1 50 IGIDLGTTYSCVGVQRGGR 68
                8********9998876664 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 3.3e-22
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE.EE-SS-EEEEEEETTEEE.....EEEEES-SHHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvv.diGggttevavislggiv.....tsksvrvaGdeldeai 184
                 + ++ v++vP   ++ +r+A k+a + aG +   +i+ep aAAi  gl+ +  +++++v d+Gggt +v+++s+ + v     t+   +++G+++d+ +
  CDO70407.1 181 TVTHAVVTVPAYFNDAQRQATKDAGTIAGLQVLRIINEPTAAAIAYGLDKKGGESQIIVyDLGGGTFDVSLLSIDDGVfevlaTAGDTHLGGEDFDNRV 279
                 456789*********************************************999998776**************9866222225567899********* PP

                 HHHHHHHHSEE--HHHH......HHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH- CS
    MreB_Mbl 185 ikyirkkynlliGerta......ekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrg 276
                 i+y+ k+y+   G   +       k+k e+ +a+ + +++ +++i+     +g   + +++ ++ +e   + +++ ++ v++vL+++  +L ++ +d+ 
  CDO70407.1 280 IDYLVKQYKKKTGADVSgnlralGKLKREVEKAKRTLSSQqSTRIEIEAFENGNDFSETLTRAKFEELNMDLFRKTMKPVEQVLKDA--NLKKEDIDE- 375
                 *********9999865511111157889999998886666699999999***********************************985..687766665. PP

                 EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 277 ivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 ivl+GG++ +  +++ll+e +g + + + +p ++va G++
  CDO70407.1 376 IVLVGGSTRIPKVQQLLKEYFGKEPSKGINPDEAVAYGAA 415
                 9999********************************9986 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.5   4.8e-05      0.12     119     167 ..     221     268 ..     185     272 .. 0.87
   2 ?    2.7   0.0     0.019        50     259     296 ..     355     394 ..     310     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.8e-05
         DDR 119 emAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGem 167
                  +Ai   l   G e+++++ DlG+G+ D +l++ ++ v    lA AG++
  CDO70407.1 221 AAAIAYGLDKKGGESQIIVYDLGGGTFDVSLLSIDDGVFE-VLATAGDT 268
                 5677778888999********************9999988.58999985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.019
         DDR 259 alRalkkvsptgnir..didfvvlvGgsalDfEipelvtd 296
                 +++ +++v   +n++  did +vlvGgs+    +++l+++
  CDO70407.1 355 TMKPVEQVLKDANLKkeDIDEIVLVGGSTRIPKVQQLLKE 394
                 56667888888888734699********987777777765 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.8e-06     0.018       7      72 ..     847     923 ..     844     928 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHHHHHHHHHHTTST...........TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEE CS
        4HBT   7 GvylallDeaagaalrslggr...........gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrd 72 
                 G +++ lD+ ag ++ +++++            ++v+++ +++d l+p  +  + ++ ++v+++gr+s++v v++ +
  CDO70407.1 847 GLLMEHLDSLAGSIAYKHMLGpdiralpknagFYMVTASVDRLDMLAPLYPVRDMRLSGQVIHTGRSSLEVAVRMEA 923
                 7889999999999999999999999999999889999***************9********************9876 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.0       5.3   1.4e+04     164     186 ..      22      44 ..      19      47 .. 0.80
   2 ?   12.5   0.0   3.5e-05      0.09     139     196 ..     363     420 ..     340     422 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 5.3
      FGGY_C 164 llmqllAdilgvpVerpktaeat 186
                 +++ +lA il +pV + +++e +
  CDO70407.1  22 VFLAFLALILLCPVSVSADEEKA 44 
                 677899999*****999987765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.5e-05
      FGGY_C 139 lealekdsgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                 l+  +  ++ ++d+++++GG ++ + ++qll + +g  p +   ++ea+a GaA+ +++
  CDO70407.1 363 LKDANL-KKEDIDEIVLVGGSTRIPKVQQLLKEYFGkEPSKGINPDEAVAYGAAVQGGI 420
                 333322.4778*************************888888889**********9986 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   2.8e+02       4      58 ..     304     375 ..     301     377 .. 0.59
   2 ?    7.7   0.1    0.0023         6      24      68 ..     603     645 ..     585     648 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
                 HHHHHHCCHHHHH..CSCCCCCC-C.CHHHHHHHHHHHH.................HHHC...TSTTTTCCCHHH CS
       FIVAR   4 qLkdsinqatntk..tssnysnydq.dkkdaynnalsaA.................nailnktnnpnatveqVnq 58 
                 +Lk ++++a+ t+  ++s  +++ + +  + + + l+ A                 +++l   ++ n+ +e++++
  CDO70407.1 304 KLKREVEKAKRTLssQQSTRIEIEAfENGNDFSETLTRAkfeelnmdlfrktmkpvEQVL---KDANLKKEDIDE 375
                 788888888888855434444432212224555566666666666666666666667777...777777777776 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0023
                 C-CCHHHHHHHHHHHHHHHC...TSTTTTCCCHHHHHHHHHHHHH CS
       FIVAR  24 ydqdkkdaynnalsaAnailnktnnpnatveqVnqalanlnqain 68 
                 +d+dk +a  +a+++++  +++  +++at e+ ++ la+++++ +
  CDO70407.1 603 EDEDK-KAILDAVKETTDWIEE-HGQTATAEDLEEKLADVQSVVT 645
                 35566.8899999999999977.5*****************9875 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.33   8.4e+02      31      86 ..     297     348 ..     281     375 .. 0.61
   2 ?    7.4   0.1    0.0024         6      25      64 ..     543     582 ..     534     598 .. 0.85
   3 ?    6.5   0.1    0.0044        11      10      39 ..     614     643 ..     607     652 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.33
                 SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHH CS
    Spectrin  31 kdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleeln 86 
                   l ++ +l ++ +  +++l++qq    ++++    +++ +++++  ++++ eeln
  CDO70407.1 297 GNLRALGKLKREVEKAKRTLSSQQSTRIEIEA----FENGNDFSETLTRAKFEELN 348
                 44444555555555555555555555544443....23333444555555555555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0024
                 CCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  25 ssedlgkdleevqallkkhkaleaelaaqqervkalnela 64 
                 ++e    ++ee+++++k+ +++ ae +aq++r++aln l+
  CDO70407.1 543 TNEKGRLSPEEIERMVKEAEEFAAEDEAQRKRIEALNSLS 582
                 445557899***************************9764 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0044
                 HHHHHHHHHHHHHHHCCSSCSSSHHHHHHH CS
    Spectrin  10 adeleeWieekeellssedlgkdleevqal 39 
                 ++e ++Wiee  + ++ edl+++l++vq+ 
  CDO70407.1 614 VKETTDWIEEHGQTATAEDLEEKLADVQSV 643
                 78999**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1043 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.35s 00:00:01.20 Elapsed: 00:00:00.52
# Mc/sec: 6075.64
//
Query:       CDO70408.1  [L=128]
Description: hypothetical protein BN946_scf184999.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 879.19
//
Query:       CDO70409.1  [L=460]
Description: hypothetical protein BN946_scf184999.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.3   0.0       0.29   10.7   0.0    1.2  1  DUF4290   Domain of unknown function (DUF4290)


Domain annotation for each model (and alignments):
>> DUF4290  Domain of unknown function (DUF4290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.6e-05      0.29      42      82 ..     268     308 ..     262     311 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.6e-05
     DUF4290  42 iievmgnlnpelrdvedfkhklWdhLaimsdfkLdvdsPye 82 
                 + ++++  ++   ++e +++k Wd   +ms+ +Ldvd+  +
  CDO70409.1 268 VASLLSVCSAARSNTEGKNRKSWDLTDLMSNGQLDVDAVTQ 308
                 556666677777888889*******************8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 3049.99
//
Query:       CDO70410.1  [L=228]
Description: hypothetical protein BN946_scf184999.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1604.73
//
Query:       CDO70411.1  [L=221]
Description: hypothetical protein BN946_scf184999.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.1    7.4   8.7        1.4    7.1   8.7    1.0  1  RAP1      Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.7   7.6e-05       1.4      62     172 ..      77     185 ..      59     202 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 7.6e-05
        RAP1  62 dkvsdesfleskaskedGninltdtsesndaskkGsGksrvrsasaaaileeddskddlefkasqsvv...ktskpkststeslksssdskskasaksn 157
                  + ++  ++e+ +s +   i +    ++++a  +  G       ++ a   +  s  d++f  + s      t  p +++  s ++ss + s  ++ ++
  CDO70411.1  77 ADATSLHLVENDSSLDFA-ITIDCGVNNGQAVCTAVGSG--NGMASMATTTQPASAFDVQFGGATSAPsgtNTIAPTGSQ--SSNASSGGASAPASDAS 170
                 45567789*******998.99988999999988776662..233444556677899999997665544311455555544..44445555555556666 PP

        RAP1 158 vksaskyGessssee 172
                 +k++s   +s+s   
  CDO70411.1 171 SKAGSAPTGSNSGTS 185
                 777777666666443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1645.68
//
Query:       CDO70412.1  [L=407]
Description: hypothetical protein BN946_scf184999.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-38  131.1   0.0    8.2e-38  130.0   0.0    1.5  1  MT-A70           MT-A70
  ------ inclusion threshold ------
       0.11   12.3   0.1       0.18   11.6   0.1    1.3  1  N6-adenineMlase  Probable N6-adenine methyltransferase


Domain annotation for each model (and alignments):
>> MT-A70  MT-A70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   9.1e-42   8.2e-38       1     169 [.     170     335 ..     170     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 9.1e-42
                 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCBS-..BS-TTSSS CS
      MT-A70   1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgepia..tlesgavl 95 
                 fdvi+idPp+++              ++++l++Lpip l+++ s+vf+Wv++  +  l  +re++ kWg++++e++ w+k+nk+ + +   ++ +   l
  CDO70412.1 170 FDVILIDPPFSSSF------------SWDDLQNLPIPALAADPSFVFMWVGSGSGDGLerGREVMGKWGFRRCEDIVWVKTNKTTNRGPgtDPPTTSLL 256
                 89*******99887............8***********************98876544449*********************988765555999999** PP

                 BB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEE CS
      MT-A70  96 kkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltv 169
                  ++k h+l+g++g+v+rs d  +++ nvdtd++i    ++    KPpe+++l+e ++ + r+Le+F+R   +r gw+tv
  CDO70412.1 257 TRTKQHCLMGIRGTVRRSNDSwFVHCNVDTDVLIWegDQSDPTLKPPEMYTLIENFCLGLRRLEIFGRArtARRGWVTV 335
                 **********************************9777788899***********************99989****997 PP

>> N6-adenineMlase  Probable N6-adenine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     2e-05      0.18      86     106 ..     167     187 ..     121     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
  N6-adenineMlase  86 kgkfdviviDPPFlseeclkk 106
                       +kfdvi+iDPPF s   +  
       CDO70412.1 167 PSKFDVILIDPPFSSSFSWDD 187
                      789**********87666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3032.63
//
Query:       CDO70413.1  [L=2112]
Description: hypothetical protein BN946_scf184999.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-37  129.2   0.0    9.1e-28   96.9   0.0    3.0  2  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    1.3e-35  122.8   0.0    1.9e-35  122.2   0.0    1.2  1  SNF2_N         SNF2 family N-terminal domain
    3.9e-20   72.3   0.0    2.3e-18   66.6   0.0    2.4  2  Helicase_C     Helicase conserved C-terminal domain
    1.5e-15   56.8   0.0    4.9e-08   32.1   0.0    2.5  2  tRNA-synt_1g   tRNA synthetases class I (M)
    1.3e-13   51.2   2.0    1.3e-13   51.2   0.2    1.9  2  Anticodon_1    Anticodon-binding domain of tRNA
      1e-07   31.6   0.0    1.9e-07   30.7   0.0    1.3  1  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
    0.00012   21.4   0.0    0.00023   20.5   0.0    1.3  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.6e-10   4.1e-07      17      84 ..      52     119 ..      42     133 .. 0.90
   2 !   96.9   0.0   3.6e-31   9.1e-28     109     601 ..     197     767 ..     168     768 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.6e-10
  tRNA-synt_1  17 ekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekkl 84 
                  e +++++++  + + Py +GslH+Gha++ +  ++   ++rm G++vl+  G+ + G++i+a+ +k +
   CDO70413.1  52 EIRQKHPKWFGTFPYPYTNGSLHLGHAFTISKIEFAAGFHRMIGERVLFPHGFHCTGMPIKAAADKIV 119
                  56778888889999***********************************************9988865 PP

  == domain 2  score: 96.9 bits;  conditional E-value: 3.6e-31
  tRNA-synt_1 109 aeyaeeirkqvkrlGvsvDfdreylTldke..leeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpl.......... 194
                  ++y     ++ k +G ++D+ r  +T d +  +   v++ + +l++ g i  g++   +s+k   +  + +    +  +++ +   ++          
   CDO70413.1 197 QYYPPICIEDNKLFGSRIDWRRSFITTDANpyYDSFVRWQMNKLYKLGKIKFGERYTVYSPKDGQPCMDHDRSEGEALGPTEYTGIKMevvqwspeaa 294
                  55555666788899************99754378889*************************999999998887777765544333333366666655 PP

  tRNA-synt_1 195 ......adkeevklviaTTtPeTllgdtavavnpeldyv....itkeklilaeallkslvkke.sek..kile..dergkeLegkevelpl.vnrkip 276
                         ++++v+lv+aT +PeT+ g+t   v   ++y+     +ke+++      ++++ +  +    +i++  ++ g+ L+g +++ p+    ++ 
   CDO70413.1 295 kavegkVGDRKVYLVAATLRPETMYGQTNCFVGTAIKYGvfaiNDKEAYVCTYRAARNMAYQGiMAVrgQINQllEIDGTALIGTKIKAPFsIIPEVY 392
                  555554444459**************************9999767788888777666666554333235665433899*************5467999 PP

  tRNA-synt_1 277 iiaddyvdkeaGtGvVkiaPahdedDyevgkkynl..............evinildedgtlteea................................. 327
                  ++  + v   +GtGvV   P   +dD+++ ++ +               +         ++++++                                 
   CDO70413.1 393 VLPMENVLPTKGTGVVTSVPSDSPDDFQTLTDLKKkpefykvdpswvavD------PIPVISTQTygemtapavvkqlkiqsqkdtkqlaeakeiayk 484
                  9999************************8766554555577785555442......444444444555556679************************ PP

  tRNA-synt_1 328 ..........aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWfvrvke..ladaalkavekvqfvpkskekryaswl 413
                            +ef+g+ v++a+  v e+l e gl +   + e    + +rs +  +  + +qW+    e   +++a k v k++ +   +++ ++  l
   CDO70413.1 485 egfyngtmlvGEFKGVPVQEAKSRVREKLIEAGLAFPYAEPEGL--IISRSSDECVIALMDQWYLDYGEpsWRAQAEKLVAKMETYNVETRNAFEGVL 580
                  *********************************97766554443..45788888888999******998889999999999**9999999******** PP

  tRNA-synt_1 414 eniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakdklkkekgelekd..edvlDv..WFsSgswpfstlgypeed 507
                  +  + W+  R    G ++p +  +   e    +++ ++    +  +  +++l+ ++   l+  +++++ +  e vl    W + +  p    +     
   CDO70413.1 581 AWLNKWACARTYGLGSKLP-WDPQFLVESLS-DSTIYMSY-YTVAHLLHSKLDGSVPGPLGITADQMTDEmwEYVLNGgpWPENAPFPKEKAD---AM 672
                  ******************9.55555444444.33333333.4556666666777788888777776653211445542225555555555444...44 PP

  tRNA-synt_1 508 teelkkffpadmlleGlDiirgWvarlillslaltgsePfk.evlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli.lsdvgrdinl 601
                  ++e++ f+p+d+ ++G D i   ++  +    a++ +  +  ++ ++g ++  +G+KmSKs+gN +   + i+k gada Rl l+   d  +d n+
   CDO70413.1 673 KNEFEYFYPFDVRSSGKDLIPNHLTFCVYNHAAIFPEDKWPlSMRTNGHLM-VNGQKMSKSKGNSMTMRQCIEKFGADATRLCLAdAGDGIEDANF 767
                  7899********************999999999987775541445555444.58*******************************88888888887 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0   7.5e-39   1.9e-35      67     348 ..    1383    1694 ..    1380    1696 .. 0.78

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 7.5e-39
                  --HHHHHHHHH..................HHTTTS---.......S-.......................EEEE--HHHHHHHHHHHHHH-TTS-EE CS
                  xxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   67 GKTvqvlalilaqr...............akeekdkekkrkdtlagp.......................tLivvPaslldqWeneierhvsssalr 125 
                   KT+qv+a++ a                                  +                        Li++P+s++ +We+e+e++     + 
  CDO70413.1 1383 RKTIQVIAFLSAIMrkrgdsldidrrrshV----------------AhlqnskdwkerrslppanatwptCLIIAPSSVVGNWEREFETWGYFE-VG 1462
                  69*********7665555555555544430................2333333344444555677788889*******************8765.88 PP

                  E--SSHHHH-----------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  126 vlvyggqkkmkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsled 222 
                  +++++      ++ +++ +  l   dv+it+ dv + +       + + ++ w ++ +DE h++kn  sk+a a s++   +r  l+GT iqn+ e+
  CDO70413.1 1463 MYIGSPT----QRADVLTDFKLGRLDVLITSVDVARIDI------DLIDELPWSCIFIDEVHRVKNPRSKLADAFSRFTCPRRFGLSGTVIQNGYEE 1549
                  8888885....57788899999**************888......9*************************************************** PP

                  HHHHHHHH-TTTT--HHHHHHHTHHHHH............HHHHHHHHHHH.TT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  223 lygLlkfLreepfgekqtfdkllqrpie............aqaekgrsrLl.qllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllev 306 
                  l++ l+  +++  g+++ ++  +++p +             qa   ++ L  +ll  + lrr+k+ +e +lP+kt +++f++l++++ ++Y+r+l+ 
  CDO70413.1 1550 LWTVLNWTNPGAVGTRKQWELYVEKPLRigqsksasdeehVQAALVAKTLTeKLLPHIFLRRTKQIIEDQLPRKTDQVVFCPLTPMQIEVYKRILNL 1646
                  ********************************998665543333344445413555799*********************************88877 PP

                  ...............HHHHHH-HHH-.........HHHHHHHHHHHHH--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxx RF
      SNF2_N  307 lrkkalakllkrseaalkssskskek.........ilelllelrqacnhpq 348 
                  ++   l +  +  +   k++++   k         +++++  l ++ nh  
  CDO70413.1 1647 EAVSNLVHKDEPCDCGSKKARR---KcchpvhpgdLFKYMSTLIKISNHLA 1694
                  6655444443333333333332...23446777777777777777777765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.045   1.2e+02      51      78 ..    1467    1494 ..    1450    1518 .. 0.83
   2 !   66.6   0.0   8.9e-22   2.3e-18       7     111 .]    1760    1868 ..    1754    1868 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.045
                  THHHHHHHHHHHHTTSSSEEEESGGGTS CS
  Helicase_C   51 pqnereeileqfnkgesdvLiatdvaer 78  
                  +  +r ++l++f+ g+ dvLi++ +++r
  CDO70413.1 1467 SPTQRADVLTDFKLGRLDVLITSVDVAR 1494
                  56799*************9998876665 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 8.9e-22
                  HHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C    7 lell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvts 99  
                    ll   ++e g+k+lif+++++ le++++ l+++g+++++l+g+++q++r  ++++f+   + + +Li+t ++++G++++ +n V+ fd+ +n+++
  CDO70413.1 1760 ETLLkeWRKEGGNKVLIFTKSVKLLEMLEFHLNTRGLRFLKLDGSTKQSDRMPMIDRFQedPDVFIFLISTMAGGTGLNLTAANKVVVFDPNWNPAH 1856
                  334444578999***********998889999999***********************97445566******************************* PP

                  HHHHHTTSSSTT CS
  Helicase_C  100 yiqriGRtgRag 111 
                    q+++R++R+g
  CDO70413.1 1857 DLQAMDRAYRFG 1868
                  **********86 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.6e-08   6.7e-05       4      61 ..      63     120 ..      61     135 .. 0.89
   2 !   32.1   0.0   1.9e-11   4.9e-08     289     371 ..     688     772 ..     666     778 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.6e-08
                   EE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS CS
  tRNA-synt_1g   4 ttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegv 61 
                   t + pY+ng+lHlGh+ ++ +    a ++r+ ge vlf  g    G+pi+ +A+k   
    CDO70413.1  63 TFPYPYTNGSLHLGHAFTISKIEFAAGFHRMIGERVLFPHGFHCTGMPIKAAADKIVR 120
                   6789************************************************998655 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 1.9e-11
                   EGGGHHHHHTHHHHHHHH..TT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 289 gkdiikFHtifwPaillg..aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedf 371
                   gkd i+ H  f      +   e k p ++ ++++l+v+g+K+SkS+g+ +++++++e++ ad+ R  la +++  +D++f ++++
    CDO70413.1 688 GKDLIPNHLTFCVYNHAAifPEDKWPLSMRTNGHLMVNGQKMSKSKGNSMTMRQCIEKFGADATRLCLADAGDGIEDANFDEKTA 772
                   899999997665555444666677899999**************************************************98865 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.4   3.7e+03      84     124 ..     644     677 ..     643     681 .. 0.53
   2 !   51.2   0.2   5.1e-17   1.3e-13       2     135 ..     806     925 ..     805     949 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
  Anticodon_1  84 itEelwqreeeelgkkesimlae.wpe.kaeel.ekele..eeeve 124
                  +t+e+w    e       +++   wpe ++ +  ek+ +  ++e+e
   CDO70413.1 644 MTDEMW----EY------VLNGGpWPEnAP-FPkEKA-DamKNEFE 677
                  899999....44......655555887333.332222.12255555 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 5.1e-17
  Anticodon_1   2 rwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkk 99 
                    + +e+n+lv+++++ y+++++++a++  ++ ++ +  dwy e++ +    ++a       e+  + ++    + +P++P+++E++w   ++ l+++
   CDO70413.1 806 TVFEHEVNDLVAKTKDFYANMQYKDALKYGFYELQSSR-DWYREVTADVG--MHA-------ELAEWWIRVAALIVSPIAPHFSEHVW---STILKEP 890
                  56789***************************977766.******98886..555.......899***********************...3555999 PP

  Anticodon_1 100 esimlaewpekaeelekeleeeevellkeivkairk 135
                  +s+ la wpe ++  ++ +   +  +++ ++k++r+
   CDO70413.1 891 KSVQLARWPEPSTIVDQSI-LDSAVYMRGTIKTMRD 925
                  *********8554444333.2222233334444443 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   7.5e-11   1.9e-07     206     282 ..     680     757 ..     656     773 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 7.5e-11
                   SSEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 206 seidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                     +d+ s G+DL+  h    +  + a f   ++      nghl+++g+kmsks +n +t+++ ++kf + + Rl l+ 
    CDO70413.1 680 YPFDVRSSGKDLIPNHLTFCVYNHAAIFPeDKWPLSMRTNGHLMVNGQKMSKSKGNSMTMRQCIEKFGADATRLCLAD 757
                   579*********988889999999999986788888889**********************************99875 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   8.8e-08   0.00023      45     129 ..    1755    1846 ..    1746    1877 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8.8e-08
  ERCC3_RAD25_C   45 kfracefLik.yhekrgDkiivfsDnvfaLkeyakklkkp...y..iyGetseaerlkilqkfkknpkvntiflskv.gDtsiDlPeanvli 129 
                     k++++e L+k ++++ g+k+++f+ +v  L+ +  +l+ +   +  + G+t++++r+ ++++f+++p+v   ++s + g t ++l  an ++
     CDO70413.1 1755 KWMVLETLLKeWRKEGGNKVLIFTKSVKLLEMLEFHLNTRglrFlkLDGSTKQSDRMPMIDRFQEDPDVFIFLISTMaGGTGLNLTAANKVV 1846
                     77777777753788889***********99999888776422232268**********************999998747899***9999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.19u 0.36s 00:00:01.54 Elapsed: 00:00:00.56
# Mc/sec: 11284.29
//
Query:       CDO70414.1  [L=615]
Description: hypothetical protein BN946_scf184999.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-12   44.5  43.0    1.2e-11   44.2  40.8    1.9  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2  40.8   6.7e-16   1.2e-11       5     321 ..     118     439 ..     110     468 .. 0.69

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 6.7e-16
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa........sslw.lllvlrvl 94 
                  + +++    +gp++   + +d+g++ s++++l  ++ + ++ as+ + +l  r+G r +  +g++lf++++++   a         +++ l+l++ +l
  CDO70414.1 118 NIAAGMVLVWFGPIAN-DMVRDFGFTLSQVNWLGNVVNVIYLPASVAVPYLYLRLGTRGTCYIGAVLFIVSAWVRY-AgtptslstGGSYaLILIGQLL 214
                 3333333333667777.999***************************************99999999999966666.334444556446669******* PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 +G +  ++  ++ ++  +wf  + r+ a+ ++++++ +G +lg l+ +l+    + r + ++lai++ +      ++l  ++p+ ++    ++      
  CDO70414.1 215 SGSAVPIFQVVIPSYSQKWFDLKGRTTATMIMGVANPVGNALGQLIPPLVG---STRQSLLVLAIIFTVISPA--VFLIGNAPPTPPTYAGTQAhvsmg 308
                 ***************************************************...8999999999998888553..555555555555555555224444 PP

       MFS_1 189 ....kgtgpaplvpawkallkdpvl.w.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.lgrrrrllla 280
                     +  g++p  + ++++  ++ + + i+ +++ ++  +++++++l+  +  e +g+s    agl+ a+l lvg+i+a +++ l dr l    +  la
  CDO70414.1 309 sllqAMAGRTPRDD-YTYMTVRQRIdFgIMTVIFGVIVGVINAFTILSGQF-FEPYGYS-DTVAGLMGAVLLLVGLIAAAITSPLYDRvL----THHLA 400
                 54442222222222.333333333332445555555566899999999998.*******.599999999999999999**********53....33344 PP

       MFS_1 281 llllllaalglallavtssavllllvlvliGfglgfvfpsl 321
                 l++ +l+ ++la + +    + + + ++ +++g++++++++
  CDO70414.1 401 LSVKVLCPILLACWLAL--IWESTWTVFAVSLGMALIMTLY 439
                 44444443333333333..2222333444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4101.91
//
Query:       CDO70415.1  [L=392]
Description: hypothetical protein BN946_scf184999.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-59  201.3   1.3    1.2e-50  172.4   0.0    2.0  2  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.0   6.9e-55   1.2e-50       4     272 ..      29     312 ..      24     316 .. 0.91
   2 !   26.1   2.6   1.9e-10   3.5e-06     313     357 ..     315     360 ..     313     386 .. 0.82

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 6.9e-55
                   CCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCT......STSSSEEE---TT-EEEEEETT. CS
  Oxysterol_BP   4 silkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyasti......krrlkKPFNPlLGEtfelvred. 93 
                   si++  +  DLs+++ P f+++p+Sl +  a ++e + l+ ++a+ +d+ eR ++V+++++S+++ ++       ++ kKP+NP+LGE f   + d 
    CDO70415.1  29 SIVS--FSGDLSSLTAPPFILSPISLTEFPAYWCERPALFAAIADAKDEKERAIAVLKWFISTLKGQYtsrnekLGSEKKPLNPVLGELFYGHWLDr 123
                   5555..789************************************999****************99999999987899****************555 PP

                   ...CEEEEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEE..EEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEEE CS
  Oxysterol_BP  94 ...kgfrfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgkslevkpeGtahlel..lkksgehYtwtkpttivhniivgklwvelsgevei 183
                       +++++ EQVsHhPp++A+++++  +g+ l+g+++ k++f   s+ vk+ G+a+l++   + ++e++ +t p + + +i +g++++el+g ++i
    CDO70415.1 124 dgrGQTNLVVEQVSHHPPITAYYISNpsKGLALQGHSAQKTSFSSGSIVVKQIGHAVLTVdlPEGKKEEFLITLPRLRIDGIWYGSPYIELTGVSYI 220
                   7877779*******************999*****************************99754779******************************* PP

                   EETTT--EEEEEEE--...-SS.S---SSEEEEEEEE.TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT-.BSXXGCGSSTTBCCCCCCH CS
  Oxysterol_BP 184 tnhstgdkakleFkkk...glf.sskksnkvegkvkd.kkkevlyeisGkwdeelyikkkktekkeeeedaseks.kvkekeeqeefeseklWka 272
                   + +s+g  +++++++k   g++  s+ks+ ++++v+   + +++ +i+G w+e+ +   +++++++++++  +++ +v++ e+ ++fes+klW++
    CDO70415.1 221 Q-SSSGWLSTIDYEAKeprGWLtFSSKSHFFKATVTPpGSSTPIKRIEGFWHETSKD--SDSGETFTDVRGPKEEvTVAPLEQMQDFESRKLWQH 312
                   *.679********99888899876799*********87889************9554..66677777777766656******************8 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.9e-10
                   HHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEEEEET CS
  Oxysterol_BP 313 raleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFekekd 357
                   r ++egd++ A++eK+++E++QR+rr+ +++++  w+ k+Fe+ ++
    CDO70415.1 315 RGIREGDYELASREKSKIENEQRQRRRDEQAAGtRWQLKHFEHIES 360
                   7899************************9555537******98773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2580.19
//
Query:       CDO70416.1  [L=346]
Description: hypothetical protein BN946_scf184999.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 1923.67
//
Query:       CDO70417.1  [L=310]
Description: hypothetical protein BN946_scf184999.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-22   78.5   1.0    7.7e-22   78.0   1.0    1.2  1  SurE      Survival protein SurE


Domain annotation for each model (and alignments):
>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   1.0   4.3e-26   7.7e-22       1     173 [.      25     217 ..      25     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 4.3e-26
                 EEEE-SS-TT-HHHHHHHHHHTTTTSEEEEEEESSS-TTCTTS--SSSEEEEEEEECS........TTTCEEEESS-HHHHHHHHHHTTTTTS....SS CS
        SurE   1 iLltNDDGieapgiralvealaaaghevvvvaPdserSgigkaltleeplrveseeee........eeeeeyavsGtPadcvklaleellkek...kpd 88 
                 +LltN DG+ ++ +ra   al  ag    +   + ++S+++k l  ++p +++s             + +   v++ P+d+v++++++l++ +   +pd
  CDO70417.1  25 VLLTNADGWATAAVRAQGGALFGAG--FNIQRNAGSKSATAKPL--TKPCEFDSCPAGspaegsdpADGRLNFVNSYPVDAVRYGIKTLSPLYlnsTPD 119
                 79*******************9777..55667778899999998..6677555332224555666444555567**************9997788899* PP

                 EEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSSSS-SSS---HHHHHHHHHHHH.....TTETTS-................SS-EEE CS
        SurE  89 lVvSGiNhGaNlgtdvlySGTvgAaleaalegipaiAvSlaskkeeekkeedtfeaaakvaaklv.....ekliekll.............lekvelln 169
                 +VvSG+  G+ lg++   SGTvgAa eaa egip+ A+S as + +    +dt ++aa+++++ +     + l    +             l+++  ln
  CDO70417.1 120 FVVSGVDAGNALGAAACESGTVGAAAEAAKEGIPSAAFSGASIS-PV-YYNDTSASAANLISSSLygnlsTAL----VsalfksassgqpiLPAGVTLN 212
                 *****************************************875.33.2222233334433333334444233....244447777888889******* PP

                 EEE.E CS
        SurE 170 vNv.P 173
                 vN+ P
  CDO70417.1 213 VNFgP 217
                 **944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2052.42
//
Query:       CDO70418.1  [L=228]
Description: hypothetical protein BN946_scf184999.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-23   82.7   1.2    4.4e-23   82.1   1.2    1.3  1  SurE      Survival protein SurE
  ------ inclusion threshold ------
      0.019   15.9   0.2       0.04   14.9   0.2    1.5  1  KRTAP7    KRTAP type 7 family


Domain annotation for each model (and alignments):
>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   1.2   4.9e-27   4.4e-23      65     173 ..      12     135 ..       5     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 4.9e-27
                 EESS-HHHHHHHHHHTTTTTS....SSEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSS.......SS-SSS---HHHHHHHHHHHH CS
        SurE  65 avsGtPadcvklaleellkek...kpdlVvSGiNhGaNlgtdvlySGTvgAaleaalegipaiAvSlaskk.......eeekkeedtfeaaakvaaklv 153
                 +v++ P+d+v++++++l++e+   +pd+VvSG+N G+Nlgt +l SGTvgAa+eaa  g+p+ A+S++s +       +        + +  +++++lv
  CDO70418.1  12 YVNSFPVDAVRFGIQTLSPEFfgaPPDFVVSGPNVGNNLGTVTLNSGTVGAACEAAKDGVPSTAFSASSLSqvsyttlQ-------SAPTSPDTLSALV 103
                 6899**************99999888*****************************************998766555442.......2333333333333 PP

                 .....TTETTS-..........SS-EEEEEEE CS
        SurE 154 .....ekliekll.......lekvellnvNvP 173
                      +++ ++ll       l+ ++ lnvN+ 
  CDO70418.1 104 yatltTNFTTALLssarspvLPLGTTLNVNFG 135
                 2222244433333777788899********97 PP

>> KRTAP7  KRTAP type 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   4.5e-06      0.04      14      58 ..     104     148 ..     101     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-06
      KRTAP7  14 ylsygtnfhrtfratplncvvplgsplnygygyngysslgysfgg 58 
                 y +  tnf  +  ++    v+plg+ ln  +g +++ss g   g 
  CDO70418.1 104 YATLTTNFTTALLSSARSPVLPLGTTLNVNFGSTTFSSSGIPNGD 148
                 88899********************************99877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1557.23
//
Query:       CDO70419.1  [L=442]
Description: hypothetical protein BN946_scf184999.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-39  132.3  12.0    1.3e-06   28.3   0.0    6.2  6  Kelch_4   Galactose oxidase, central domain
    4.5e-37  125.4   9.4      8e-08   31.7   0.2    6.2  6  Kelch_1   Kelch motif
    8.1e-33  111.9   8.1    1.2e-08   34.7   0.1    6.4  6  Kelch_5   Kelch motif
    4.2e-31  106.6  13.7    2.9e-07   30.6   0.1    6.9  7  Kelch_3   Galactose oxidase, central domain
    4.6e-26   90.2  10.0    6.1e-06   26.3   0.0    5.9  6  Kelch_6   Kelch motif
    6.8e-24   82.9  14.9    9.3e-07   28.6   0.1    5.9  6  Kelch_2   Kelch motif
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.047   13.8   0.0    1.3  1  Fer4_14   4Fe-4S single cluster domain
      0.045   14.3   4.9       0.11   13.0   4.9    1.7  1  FAM27     FAM27 D and E protein family
        1.1    7.8   2.4        1.5    7.4   2.4    1.1  1  Hamartin  Hamartin protein


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.1e-06     0.014       5      36 ..     133     162 ..     131     174 .. 0.86
   2 !   28.3   0.0   6.7e-10   1.3e-06       5      43 ..     186     223 ..     184     230 .. 0.86
   3 !   24.5   0.1   9.9e-09     2e-05       1      44 [.     240     285 ..     240     293 .. 0.85
   4 !   25.3   0.1   5.6e-09   1.1e-05       2      44 ..     295     335 ..     294     339 .. 0.92
   5 !   17.7   0.0   1.3e-06    0.0026       2      40 ..     343     379 ..     342     390 .. 0.81
   6 !   24.3   0.3   1.1e-08   2.3e-05       1      37 [.     392     426 ..     392     427 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-06
     Kelch_4   5 hsatsipdgtiylfGGrgedgtllndlylldl 36 
                 h++t + d+  +lfGG+ e  t+  dl+ +++
  CDO70419.1 133 HTVTLV-DNVAWLFGGCDER-TCWRDLFCFNT 162
                 9*****.69**********9.9****999997 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 6.7e-10
     Kelch_4   5 hsatsipdgtiylfGGrgedgtllndlylldlstntW.rr 43 
                 hsat +++  +++ GG+g d   +nd+y+ld+ t++W  +
  CDO70419.1 186 HSATLVDRKIFVVGGGEGLD--YYNDVYVLDTVTREWhHP 223
                 9*****98888888899996..8**************555 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 9.9e-09
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstn....tWrrl 44 
                 pR+ h+++   ++++++fGG ++   +lnd+++ldls +    +W+++
  CDO70419.1 240 PRRAHTSVFY-KNKLWIFGGGNGT-HALNDVWALDLSGGldrlRWEEV 285
                 7889999999.8***********7.9**********998888888887 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 5.6e-09
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWrrl 44 
                 R++h+a  i+    +++GG  ++ ++++d++ l+l t  W+ +
  CDO70419.1 295 RGYHTANLIG-SVMVVVGGSDGK-QCFSDIWCLNLDTLLWSLV 335
                 99*******7.69999*******.9***************865 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 1.3e-06
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstnt 40 
                 R +h+at+++  ++++fGG  +    + dl l++l + +
  CDO70419.1 343 RLSHTATQVG-SYLFIFGGHDGA-NYMQDLLLFNLVSLQ 379
                 99*******7.7**********8.7**********9884 PP

  == domain 6  score: 24.3 bits;  conditional E-value: 1.1e-08
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldls 37 
                 pR++h+a+   d ++++fGG ++  ++++d+++ldl+
  CDO70419.1 392 PRGYHAACLA-DSRVFIFGGFNGV-EVFDDVHILDLA 426
                 9*********.68**********9.9*********96 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0012       2.4       5      34 ..     133     162 ..     129     171 .. 0.88
   2 !   31.7   0.2     4e-11     8e-08       1      40 [.     182     221 ..     182     222 .. 0.95
   3 !   25.9   0.0   2.6e-09   5.3e-06       1      35 [.     240     274 ..     240     285 .. 0.92
   4 !   25.2   0.1   4.3e-09   8.6e-06       2      42 ..     295     335 ..     294     336 .. 0.94
   5 !   16.8   0.0   1.9e-06    0.0039       1      36 [.     342     377 ..     342     382 .. 0.89
   6 !   18.7   0.1   4.8e-07   0.00095       1      34 [.     392     425 ..     392     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                 EEEEEETTEEEEEEEBCSSSBEEEEEEEET CS
     Kelch_1   5 agavvvggkiYviGGsdggnalssvevyDp 34 
                 ++++ v++    +GG+d+ ++ ++++++++
  CDO70419.1 133 HTVTLVDNVAWLFGGCDERTCWRDLFCFNT 162
                 89999*************999999999997 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 4e-11
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpetntWr 40 
                 +++ ++a+ v+ ki+v+GG+ g  + ++v+v+D++t +W+
  CDO70419.1 182 PCRAHSATLVDRKIFVVGGGEGLDYYNDVYVLDTVTREWH 221
                 57889**********************************7 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 2.6e-09
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETT CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpe 35 
                 +r+ +++v   +k+ ++GG++g  al++v+++D+ 
  CDO70419.1 240 PRRAHTSVFYKNKLWIFGGGNGTHALNDVWALDLS 274
                 7999*****************************86 PP

  == domain 4  score: 25.2 bits;  conditional E-value: 4.3e-09
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpetntWrel 42 
                 r +++a  +g  + v+GGsdg ++ s+++++++ t  W+ +
  CDO70419.1 295 RGYHTANLIGSVMVVVGGSDGKQCFSDIWCLNLDTLLWSLV 335
                 7899999*****************************99965 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 1.9e-06
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTT CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpet 36 
                 +r  ++a+ vg +++++GG+dg n++ ++  +++++
  CDO70419.1 342 RRLSHTATQVGSYLFIFGGHDGANYMQDLLLFNLVS 377
                 6889********************999998888876 PP

  == domain 6  score: 18.7 bits;  conditional E-value: 4.8e-07
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEET CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDp 34 
                 +r +++a+  + +++++GG++g +  ++v ++D+
  CDO70419.1 392 PRGYHAACLADSRVFIFGGFNGVEVFDDVHILDL 425
                 799****************************997 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   3.5e+02       6      22 ..     131     147 ..     128     151 .. 0.83
   2 !   25.4   0.1   5.2e-09     1e-05       1      39 [.     179     215 ..     179     217 .. 0.94
   3 !   33.8   0.0   1.1e-11   2.3e-08       1      41 [.     237     275 ..     237     276 .. 0.95
   4 !   10.0   0.0   0.00035      0.69       2      41 ..     292     329 ..     292     330 .. 0.94
   5 !    5.8   0.0    0.0072        14       5      25 ..     343     363 ..     342     375 .. 0.78
   6 !   34.7   0.1     6e-12   1.2e-08       2      41 ..     390     427 ..     389     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.17
     Kelch_5   6 aghcavtvsekiYvyGG 22 
                 + h +  v++  +++GG
  CDO70419.1 131 RAHTVTLVDNVAWLFGG 147
                 56777789********9 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5.2e-09
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 iP p + h+a  v+ ki+v GG  g   ++++dvyvLd+
  CDO70419.1 179 IPKPCRAHSATLVDRKIFVVGGGEG--LDYYNDVYVLDT 215
                 68999*******************6..**********96 PP

  == domain 3  score: 33.8 bits;  conditional E-value: 1.1e-11
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 +PppR+ h +v++++k++++GG +g   ++ +dv+ Ldl +
  CDO70419.1 237 FPPPRRAHTSVFYKNKLWIFGGGNG--THALNDVWALDLSG 275
                 6***********************6..***********976 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00035
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P+ R +h a   ++ + v GG +g  ++ ++d++ L+l +
  CDO70419.1 292 PSERGYHTANLIGSVMVVVGGSDG--KQCFSDIWCLNLDT 329
                 8899*******************6..**********9976 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0072
     Kelch_5   5 RaghcavtvsekiYvyGGkvg 25 
                 R +h a  v+++++++GG +g
  CDO70419.1 343 RLSHTATQVGSYLFIFGGHDG 363
                 667888889*********876 PP

  == domain 6  score: 34.7 bits;  conditional E-value: 6e-12
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P pR +h+a+ +++ ++++GG++g   +v+ddv++Ldl +
  CDO70419.1 390 PIPRGYHAACLADSRVFIFGGFNG--VEVFDDVHILDLAG 427
                 99*********************6..***********975 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4       3.2   6.4e+03      34      42 ..      49      60 ..      30      67 .. 0.53
   2 !   13.0   0.1   4.7e-05     0.093       2      48 ..     140     190 ..     139     191 .. 0.89
   3 !   25.4   0.0   6.4e-09   1.3e-05       2      48 ..     193     248 ..     192     249 .. 0.77
   4 !   30.6   0.1   1.4e-10   2.9e-07       2      48 ..     251     302 ..     250     303 .. 0.92
   5 !   17.8   0.0   1.5e-06     0.003       2      48 ..     305     350 ..     304     351 .. 0.84
   6 !   17.6   0.0   1.7e-06    0.0035       1      48 [.     352     400 ..     352     401 .. 0.92
   7 !    6.5   0.0    0.0052        10       2      27 ..     403     426 ..     402     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.2
     Kelch_3 34 i...aslppaRa 42
                    +++p++R+
  CDO70419.1 49 AassSRTPSGRR 60
                122255677776 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.7e-05
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydl...dtntWa..ei.aslppaRaghaata 48 
                 + +++fGG++   +++  d++ +++   +t +W+  ++ +  p +++ h+at+
  CDO70419.1 140 NVAWLFGGCD--ERTCWRDLFCFNTgrsETMQWThpQVrGKIPKPCRAHSATL 190
                 789*******..99999********777777***8888999999******996 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 6.4e-09
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWa......eiasl........ppaRaghaata 48 
                  +++++GG    g d++ndvyv+d++t +W       +   +        pp+R+ h++++
  CDO70419.1 193 RKIFVVGGGE--GLDYYNDVYVLDTVTREWHhplssdT---PeaertcpfPPPRRAHTSVF 248
                 5899******..9******************8654331...12233346699999999875 PP

  == domain 4  score: 30.6 bits;  conditional E-value: 1.4e-10
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtn....tWaei...aslppaRaghaata 48 
                 ++l+ifGG +  g+ +lndv+++dl+ +     W+e+   +  p+ R +h+a +
  CDO70419.1 251 NKLWIFGGGN--GTHALNDVWALDLSGGldrlRWEEVhthGKKPSERGYHTANL 302
                 89********..*************9889999***99888***********976 PP

  == domain 5  score: 17.8 bits;  conditional E-value: 1.5e-06
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaeiaslpp.aRaghaata 48 
                   ++++GG +  g ++ +d + ++ldt  W  +       R +h+at+
  CDO70419.1 305 SVMVVVGGSD--GKQCFSDIWCLNLDTLLWSLVKLGEHhRRLSHTATQ 350
                 579*******..******************988655445888888876 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 1.7e-06
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWa..eiaslpp.aRaghaata 48 
                 g +l+ifGG +  g ++  d+++++l++ +++  +ia  pp +R +haa++
  CDO70419.1 352 GSYLFIFGGHD--GANYMQDLLLFNLVSLQYEsrQIAGKPPiPRGYHAACL 400
                 679********..****************77777**999999*******97 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0052
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydld 27 
                  r++ifGG++  g ++  dv+ +dl+
  CDO70419.1 403 SRVFIFGGFN--GVEVFDDVHILDLA 426
                 589*******..99999999988875 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.6   3.2e+03       5      34 ..     133     161 ..     131     172 .. 0.54
   2 !   26.3   0.0     3e-09   6.1e-06       3      42 ..     184     222 ..     181     231 .. 0.91
   3 !   20.2   0.0   2.7e-07   0.00053       1      42 [.     240     284 ..     240     285 .. 0.81
   4 !   10.2   0.1   0.00038      0.75       6      43 ..     299     335 ..     295     336 .. 0.75
   5 !   18.0   0.0   1.3e-06    0.0025       2      50 .]     343     393 ..     342     394 .. 0.82
   6 !   17.6   0.0   1.8e-06    0.0036       2      35 ..     393     425 ..     391     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
     Kelch_6   5 hslvsvggkiYifGGytds..spylnkvwvyd 34 
                 h++++v++  ++fGG +    +   +++++++
  CDO70419.1 133 HTVTLVDNVAWLFGGCDERtcW---RDLFCFN 161
                 6666666666777774432333...5556665 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 3e-09
     Kelch_6   3 aghslvsvggkiYifGGytdsspylnkvwvydpetksWeq 42 
                  +hs+++v+ ki+++GG  +   y+n+v+v+d  t+ W +
  CDO70419.1 184 RAHSATLVDRKIFVVGGGEG-LDYYNDVYVLDTVTREWHH 222
                 48******************.9****************86 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 2.7e-07
     Kelch_6   1 praghslvsvggkiYifGGytdsspylnkvwvyd....petksWeq 42 
                 pr +h++v + +k++ifGG ++ + +ln+vw +d    ++  +We+
  CDO70419.1 240 PRRAHTSVFYKNKLWIFGGGNG-THALNDVWALDlsggLDRLRWEE 284
                 6899******************.899********444333455665 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00038
     Kelch_6   6 slvsvggkiYifGGytdsspylnkvwvydpetksWeql 43 
                 ++ ++g+  +++GG+++  + ++++w+++++t  W+ +
  CDO70419.1 299 TANLIGSVMVVVGGSDG-KQCFSDIWCLNLDTLLWSLV 335
                 55555554466677777.9999***********99875 PP

  == domain 5  score: 18.0 bits;  conditional E-value: 1.3e-06
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWeq..lp.plpvpr 50 
                 r++h+++ vg++++ifGG ++  +y  +++++++ +   e   ++  +p+pr
  CDO70419.1 343 RLSHTATQVGSYLFIFGGHDG-ANYMQDLLLFNLVSLQYESrqIAgKPPIPR 393
                 889******************.8***********998755433542455665 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 1.8e-06
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydp 35 
                 r +h++++++++++ifGG ++  + +++v+++d+
  CDO70419.1 393 RGYHAACLADSRVFIFGGFNG-VEVFDDVHILDL 425
                 559******************.79******9997 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.8   3.6e+03      32      42 ..     160     170 ..     130     172 .. 0.57
   2 !   22.6   0.0   3.6e-08   7.1e-05       2      43 ..     183     221 ..     182     222 .. 0.95
   3 !   10.6   0.0   0.00022      0.43       1      38 [.     240     274 ..     240     276 .. 0.94
   4 !   19.0   0.3   4.9e-07   0.00097       2      46 ..     295     336 ..     294     338 .. 0.94
   5 !    8.3   0.0    0.0012       2.3       1      25 [.     342     363 ..     342     378 .. 0.77
   6 !   28.6   0.1   4.7e-10   9.3e-07       1      37 [.     392     425 ..     392     427 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
     Kelch_2  32 vhvldlekhvW 42 
                 +++ + e+ +W
  CDO70419.1 160 FNTGRSETMQW 170
                 34556666666 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 3.6e-08
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWe 43 
                 +  hs++ ++ ki+vvGG    +++++ +dv+vld+ +++W 
  CDO70419.1 183 CRAHSATLVDRKIFVVGGG---EGLDYYNDVYVLDTVTREWH 221
                 678****************...*******************5 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00022
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldle 38 
                 +r  h+s+   +k+ ++GG    n+ ++ +dv+ ldl+
  CDO70419.1 240 PRRAHTSVFYKNKLWIFGGG---NGTHALNDVWALDLS 274
                 6899****************...***********9986 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 4.9e-07
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 rg h++  +g+ ++vvGG+   ++   +sd+++l+l++  W++v+
  CDO70419.1 295 RGYHTANLIGSVMVVVGGS---DGKQCFSDIWCLNLDTLLWSLVK 336
                 78999999***********...*******************9987 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0012
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnp 25 
                 rr  h+++ +g+ ++++GG+   ++
  CDO70419.1 342 RRLSHTATQVGSYLFIFGGH---DG 363
                 57789***************...33 PP

  == domain 6  score: 28.6 bits;  conditional E-value: 4.7e-10
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldl 37 
                 +rg h+++  +++++++GG+   n++++++dvh+ldl
  CDO70419.1 392 PRGYHAACLADSRVFIFGGF---NGVEVFDDVHILDL 425
                 79******************...************97 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.047       5      71 ..     145     216 ..     142     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
     Fer4_14   5 lsgCn.lsCk...gCdnk.etwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklv 71 
                 ++gC    C    +C+n+  +  +++++pq++  + +  +  +++ ++++  v+ GGe L y+n+  +l+ v
  CDO70419.1 145 FGGCDeRTCWrdlFCFNTgRSETMQWTHPQVRGKIPKPCRAHSATLVDRKIFVVGGGEGLDYYNDVYVLDTV 216
                 567751456677799965245678**************************999999********98887766 PP

>> FAM27  FAM27 D and E protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.9   5.7e-05      0.11      13      80 ..      54     121 ..      42     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
       FAM27  13 rlttGsmtqaetrkeaeqkrqadareialwarGtirPrththkgthtqtdrereretr.rlrdrrrren 80 
                 r ++G  t +   + a   r a       +  G+  P+t+  +   t  dr+r+r++  r + r+ re 
  CDO70419.1  54 RTPSGRRTPSSLARSAA-ARSASGDTLNGGVSGMTTPKTQRSRSPATVKDRDRDRDRDdRSQSRQDREG 121
                 66667666666666666.6788888889999*******************9999987523333444443 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.4   0.00077       1.5     276     354 ..      20     103 ..       4     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00077
    Hamartin 276 ptsspytdlqsstgsststpistkrlqlsslsgtspavlsvessrskddeislWSPs......svcgmttppsspgivpttelel 354
                   +spy++  s+tgs+t+ +  t+ ++l s+  +s++ +   +++s   +  + S s       v+gmttp++++  +p+t  + 
  CDO70419.1  20 NARSPYFHH-SVTGSATTFKAATSTTSLASAASSSRTPSGRRTPSSLARSAAARSASgdtlngGVSGMTTPKTQRSRSPATVKDR 103
                 567888855.999999998888888777776665555444444444444444466666679999***************987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3175.86
//
Query:       CDO70420.1  [L=312]
Description: hypothetical protein BN946_scf184999.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00091   19.7  27.0      0.049   14.1   1.3    5.5  4  SMP       Seed maturation protein
  ------ inclusion threshold ------
       0.12   12.3   3.5         20    5.2   0.0    3.3  3  Ifi-6-16  Interferon-induced 6-16 family


Domain annotation for each model (and alignments):
>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.3   5.5e-06     0.049      20      54 ..      58      91 ..      47      93 .. 0.75
   2 !    4.4   6.3    0.0059        53      39      54 ..     122     167 ..      99     168 .. 0.60
   3 !    6.5   3.4    0.0013        12      19      54 ..     212     246 ..     185     247 .. 0.64
   4 ?    1.6   0.0     0.045     4e+02      31      57 ..     274     299 ..     265     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.5e-06
         SMP 20 tpeDAaavqaAEaraageartapgG.vAaaaqaAAd 54
                 ++ A  + + E ra+g   ++p G +Aa+aqaAA+
  CDO70420.1 58 GEAEARKIVSEEHRALG--FRPPDGsLAAQAQAAAA 91
                45567778888889999..4455555*********8 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0059
         SMP  39 r..............................tapgGvAaaaqaAAd 54 
                 +                              ++ g +Aa aq+AA+
  CDO70420.1 122 GgqpsykmqhisvpdeaslvmseehselgyrPPAGSLAAEAQSAAA 167
                 245555555555555555555555555555355566*********8 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0013
         SMP  19 VtpeDAaavqaAEaraageartapgG.vAaaaqaAAd 54 
                 +t+  A+  ++ E   +g   t+p G +Aa+aqaA++
  CDO70420.1 212 ITRLEAQQLESLEHKSLG--YTPPSGsLAAQAQAAVA 246
                 444445555555555556..4677776********97 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.045
         SMP  31 EaraageartapgGvAaaaqaAAdaNe 57 
                 E r +g  +++p  +A +aq+ Ad N+
  CDO70420.1 274 EHRTLGY-EPPPDNIAVVAQSLADQNA 299
                 7777783.568999************7 PP

>> Ifi-6-16  Interferon-induced 6-16 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.025   2.3e+02      27      40 ..      80      93 ..      71     100 .. 0.76
   2 ?    5.2   0.0    0.0022        20      26      39 ..     155     168 ..     149     173 .. 0.79
   3 ?    4.0   0.4    0.0051        46      26      50 ..     234     258 ..     226     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.025
    Ifi-6-16 27 gSlAAkmmSaaAia 40
                gSlAA+ ++aaA  
  CDO70420.1 80 GSLAAQAQAAAARH 93
                78888888888755 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0022
    Ifi-6-16  26 agSlAAkmmSaaAi 39 
                 agSlAA+ +SaaA 
  CDO70420.1 155 AGSLAAEAQSAAAR 168
                 78888888888875 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0051
    Ifi-6-16  26 agSlAAkmmSaaAianGGgVaaGsl 50 
                 +gSlAA+ ++a+A      V++Gs 
  CDO70420.1 234 SGSLAAQAQAAVARRGAQPVTKGSC 258
                 6999999999998776667888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2142.36
//
Query:       CDO70421.1  [L=146]
Description: hypothetical protein BN946_scf184999.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-24   85.1   1.0      5e-24   84.5   1.0    1.3  1  HMG_box    HMG (high mobility group) box
    2.8e-18   66.3   1.4      5e-18   65.5   1.4    1.4  1  HMG_box_2  HMG-box domain
    0.00075   19.4   0.0     0.0015   18.4   0.0    1.5  1  CHDNT      CHDNT (NUC034) domain
     0.0016   19.0   0.6     0.0022   18.6   0.5    1.3  1  YABBY      YABBY protein
  ------ inclusion threshold ------
      0.023   14.6   2.0      0.023   14.6   2.0    1.8  2  HMG_box_5  HMG (high mobility group) box 5


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   1.0   1.4e-27     5e-24       1      68 [.      63     130 ..      63     131 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1.4e-27
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 pkR+lsa+++fs++ r+ +kaenP++   ei+k lg+kWk+l +eeKk+Y+++a+++kar e ek+ey
  CDO70421.1  63 PKRALSAYMFFSQDWRERIKAENPDAGFGEIGKLLGAKWKELDDEEKKPYIDQAAADKARAEHEKSEY 130
                 8******************************************************************9 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   1.4   1.4e-21     5e-18       1      73 []      60     131 ..      60     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.4e-21
                 ---.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS--- CS
   HMG_box_2   1 pkkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealtyd 73 
                 pk pk+a +AY++f q+ ++ +k++ np +g++e+ kl++ kWk l +eeK++Y ++A +dk+r++ e  +yd
  CDO70421.1  60 PKAPKRALSAYMFFSQDWRERIKAE-NPDAGFGEIGKLLGAKWKELDDEEKKPYIDQAAADKARAEHEKSEYD 131
                 788**********************.******************************************99987 PP

>> CHDNT  CHDNT (NUC034) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.3e-07    0.0015      12      49 ..      67     104 ..      64     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.3e-07
       CHDNT  12 ltnyKlFsqhvRPlllkenPkvavsklvmLvaakwrEF 49 
                 l+ y  Fsq  R  +  enP +    + +L+ akw+E 
  CDO70421.1  67 LSAYMFFSQDWRERIKAENPDAGFGEIGKLLGAKWKEL 104
                 88999*******************************96 PP

>> YABBY  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5     6e-07    0.0022      94     140 ..      43      89 ..      23     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6e-07
       YABBY  94 ssseqeeeeeekvvnrppekrqRvPsaYnrFikeeiqRikaenPdis 140
                 ++ e++e+ +++ +++ p   +R+ saY  F ++  +RikaenPd  
  CDO70421.1  43 KAAEKQEKGTKSRAKKDPKAPKRALSAYMFFSQDWRERIKAENPDAG 89 
                 333444555568899999999***********************975 PP

>> HMG_box_5  HMG (high mobility group) box 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.42   1.5e+03      55      63 ..      43      51 ..      39      75 .. 0.57
   2 ?   14.6   2.0   6.5e-06     0.023      34      77 ..      94     137 ..      56     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.42
   HMG_box_5 55 kaaedqkry 63
                kaae q + 
  CDO70421.1 43 KAAEKQEKG 51
                566655543 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.5e-06
   HMG_box_5  34 lkameatwsnmekkekimwikkaaedqkryerelsemrsaaaat 77 
                  k + a w++++  ek  +i +aa d+ r e e se     a +
  CDO70421.1  94 GKLLGAKWKELDDEEKKPYIDQAAADKARAEHEKSEYDGKKADS 137
                 488999***************************99987766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1028.49
//
Query:       CDO70422.1  [L=353]
Description: hypothetical protein BN946_scf184999.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-69  234.0   0.0    2.1e-69  233.7   0.0    1.0  1  Peptidase_C65  Peptidase C65 Otubain
    0.00017   22.1   0.0     0.0099   16.4   0.0    2.2  1  OTU            OTU-like cysteine protease


Domain annotation for each model (and alignments):
>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.7   0.0   2.3e-73   2.1e-69       4     244 ..      94     340 ..      92     342 .. 0.94

  Alignments for each domain:
  == domain 1  score: 233.7 bits;  conditional E-value: 2.3e-73
                    CCSXSB---EETHHHHTTTTT.THHHHHHHHHHHTT.EEEEE-B--SSTHHHHHHHHHHHHHHHH-HH...HHHHHHHHHHHHHHHHHHTT--HHH CS
  Peptidase_C65   4 kqkplvsekkplsaLakeyek.naailkkikllsek.YssiRrvrgDGnCfyRaflfsylellleskdka.evsrikerveklkealeslgfdeev 96 
                    +++pl+++ +p+++L +eye+ ++ ++k+i++l ++ + +iRr+rgDG+CfyR+++f+y+e++l+ ++ +  + +    + ++ ++l+++gf+e v
     CDO70422.1  94 ETRPLIGALEPMATLRAEYENgSQSFVKQIDWLMDQgWIGIRRTRGDGDCFYRSLAFAYIEQILNATEPQlAALKALSILDQMPSQLKAVGFQELV 189
                    789******************************9999******************************987788899999***************** PP

                    HHHHHHHHHHHHHHHHTTSS-HH.....HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGS-TT.....--HHHHHHHHTSSTT--B-HHH CS
  Peptidase_C65  97 vedfleaflellkkiekkteeseeka.eellkafneqeesdyivvflRlltsaelkthadeyepFldel.....stveeFceqevepvnkEaDnvq 186
                    +edf++af++l+k + +   +    + ++llkafne+e+s+++v++lRll+sa++k + d+y +Fl +      ++ e+Fc++ ve+++kEaD+vq
     CDO70422.1 190 FEDFHDAFADLIKAVVEPRVDGRLLTiSSLLKAFNEPETSNSVVMYLRLLASAHIKGNPDSYAGFLLHPetaesMDPESFCNNFVEAFGKEADHVQ 285
                    *************98776666666667***************************************999889889999****************** PP

                    HHHHHHHTT--EEEEESSSSGBSTTSEEEEES-S....SS-S--SEEEEEETBEEEEE CS
  Peptidase_C65 187 itaLaealgvkvrVeyldrsvegesvnahafpeeaqkseeeqapeitLlYrpgHYDiL 244
                    i+aL+++l+v+++V+yld   ++ +v + +f++   ++e+++++ + LlYrpgHYDiL
     CDO70422.1 286 INALSSMLKVNINVAYLDGHDPNGRVSYVKFQD---AAEDPDTEPVNLLYRPGHYDIL 340
                    ******************997778888889973...57999****************9 PP

>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-06    0.0099      68     101 ..     218     318 ..     138     337 .. 0.46

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
                 H................................................................HHHHHHHHHHCTS-EEE..ETTSSSSE.EEE-TT CS
         OTU  68 g................................................................eleifalahiLrrpIiV..lksesgee.lvglkf 99 
                 +                                                                +++i al+++L+++I V  l   +++   +++kf
  CDO70422.1 218 SllkafnepetsnsvvmylrllasahikgnpdsyagfllhpetaesmdpesfcnnfveafgkeadHVQINALSSMLKVNINVayLDGHDPNGrVSYVKF 316
                 02222222222222333333333333333355555555555555555555555555555555555*****************64444333323455555 PP

                 -E CS
         OTU 100 eg 101
                 + 
  CDO70422.1 317 QD 318
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2156.14
//
Query:       CDO70423.1  [L=205]
Description: hypothetical protein BN946_scf184999.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.21   11.7   0.0    1.3  1  Mst1_SARAH  C terminal SARAH domain of Mst1


Domain annotation for each model (and alignments):
>> Mst1_SARAH  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05      0.21       5      22 ..       5      22 ..       1      25 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
  Mst1_SARAH  5 kflsvdeLqqrlasLDpe 22
                k++s +eL  rl++LDp 
  CDO70423.1  5 KNWSREELIARLQQLDPH 22
                9***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1302.37
//
Query:       CDO70424.1  [L=402]
Description: hypothetical protein BN946_scf184999.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-19   69.0   0.0    7.7e-19   68.4   0.0    1.2  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   4.3e-23   7.7e-19       2     159 ..      94     264 ..      93     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.3e-23
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.......grlrllvsrgggglgaatsepsvavyvsalp 87 
                  +fE+m++y   +g++  f+ +++++R++ sa+++ + +pfd++el k+++ l++ ++ +        +++r++++++ ++lg   +++s+++yv+++p
   CDO70424.1  94 VFEGMKAYlgpDGKPrlFRPNKNMDRMAISAARV-ALPPFDTNELLKLIKRLVAIEQRWIptqkghsLYIRPTIIGTRSSLG-VAASDSAVLYVICSP 189
                  8**********88887699************777.7****************************99999*************.99999999******* PP

  Aminotran_4  88 pgpeseke.....lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNvfivk 159
                   gp+  +      l +v+ + vr+++  +  +   lny++ +  +++a++ g+d++l++  +  +tE++ +N+f+v 
   CDO70424.1 190 TGPYFRTGarpvsLLAVNET-VRAWPGGTGGYKLALNYAPTFKPQQYAAKLGYDQCLWLLGEK-ITEAGAMNFFVVI 264
                  ****999999*854444444.89999999999999**********************998877.*********8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2800.26
//
Query:       CDO70425.1  [L=324]
Description: hypothetical protein BN946_scf184999.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-31  109.4   0.2    2.9e-31  108.8   0.2    1.3  1  SurE      Survival protein SurE
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.26   11.5   0.0    1.5  1  DUF1412   Protein of unknown function (DUF1412)


Domain annotation for each model (and alignments):
>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.2   3.3e-35   2.9e-31       1     174 [.      25     241 ..      25     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 3.3e-35
                 EEEE-SS-TT-HHHHHHHHHHTTTTSE...........EEEEEESSS-TTCTTS--SSSEE......EEEEEECS............TTTCEEEESS-H CS
        SurE   1 iLltNDDGieapgiralvealaaaghe...........vvvvaPdserSgigkaltleepl......rveseeee............eeeeeyavsGtP 70 
                 iL++NDDG+ +++ir+  ++l+++g++           vv+ aP+ ++Sg g+  ++ epl      +      +            ++ +  +v+G P
  CDO70425.1  25 ILISNDDGWATAQIRQQFDTLNSTGYNsgscylfadlqVVLSAPALDQSGRGSLSKTPEPLtepcefN------TcpagspafgsdsNNPRLNYVNGYP 117
                 8****************999996666566666666666***************998888884444330......245556667766577777789**** PP

                 HHHHHHHHHTTTTTS.....SSEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSS.....SS-SSS---HHHHHHHHHHHHTTETTS- CS
        SurE  71 adcvklaleellkek....kpdlVvSGiNhGaNlgtdvlySGTvgAaleaalegipaiAvSlaskk.....eeekkeedtfeaaakvaaklvekliekl 160
                 +d++++++++l k++    +pd+VvSG+N G+Nlg  vl SGT+gAa+eaa +gipa A+S  s       + ++++++t+++aa++ a+l+++++++l
  CDO70425.1 118 VDAARYGIQTLAKQFfasgQPDFVVSGPNVGPNLGLTVLLSGTIGAACEAARSGIPAGAFSGMSGAqvsytTLSTDPNSTASRAARIYADLTATFVDAL 216
                 ************999999999****************************************98877888885555677788999999999998887777 PP

                 ..............SS-EEEEEEES CS
        SurE 161 l...........lekvellnvNvPe 174
                 +           l+ + ++nvN+ +
  CDO70425.1 217 TtspaarasdalLPPGVIVNVNYAA 241
                 78888888888899999*****974 PP

>> DUF1412  Protein of unknown function (DUF1412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.9e-05      0.26       7      37 ..     223     255 ..     221     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
     DUF1412   7 RatqeyynsnGVvnNv...VsDnlaGGptslGWa 37 
                 Ra++++  ++GV++Nv     D  aGG+ s GW+
  CDO70425.1 223 RASDALL-PPGVIVNVnyaAVDACAGGAASYGWV 255
                 5555555.99***99954457************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2509.76
//
Query:       CDO70426.1  [L=425]
Description: hypothetical protein BN946_scf184999.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3256.57
//
Query:       CDO70427.1  [L=374]
Description: hypothetical protein BN946_scf184999.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00026   21.4   9.4      0.011   16.1   0.1    4.4  4  SMP       Seed maturation protein


Domain annotation for each model (and alignments):
>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.9   0.00049       8.8      23      54 ..      92     130 ..      81     131 .. 0.79
   2 ?   -0.2   0.0     0.078   1.4e+03      17      29 ..     148     160 ..     146     189 .. 0.77
   3 !   16.1   0.1   6.4e-07     0.011      19      54 ..     204     238 ..     201     239 .. 0.89
   4 ?   -1.6   0.0      0.21   3.8e+03      18      29 ..     255     266 ..     252     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00049
         SMP  23 DAaavqaAEaraagea.r.....tapgG.vAaaaqaAAd 54 
                 D  av  AEar   ++ +     ++p G  Aa +q+ A+
  CDO70427.1  92 DLDAVSMAEARKVMSEeHkvlgfRPPHGsFAAEVQSIAA 130
                 66789999999888774477888455555*******997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.078
         SMP  17 kpVtpeDAaavqa 29 
                 k +++eDA ++ a
  CDO70427.1 148 KEIAREDALRILA 160
                 7899999988865 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 6.4e-07
         SMP  19 VtpeDAaavqaAEaraageartapgGvAaaaqaAAd 54 
                 +   DA    + E ra+g  r++pg +Aa aq+AA+
  CDO70427.1 204 ISATDARVLMSHEHRALG-FRPPPGSLAAEAQSAAA 238
                 5678999***********.57799***********8 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.21
         SMP  18 pVtpeDAaavqa 29 
                  ++ +DA++++a
  CDO70427.1 255 EIALRDAERIKA 266
                 68899***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2702.21
//
Query:       CDO70428.1  [L=228]
Description: hypothetical protein BN946_scf184999.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.034   13.8   0.0       0.05   13.3   0.0    1.2  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-06      0.05      90     175 ..      78     165 ..      63     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-06
                    TEEEEEEECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEE...CTSSS-TTTTST CS
  Peptidase_M28  90 kiaavlnlDmvgsggkellfesgdkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldl...aetgfpevyHtp 175
                    +  ++++ Dm++   +     + +  ++  + e+++l++ v+ +++++ +     + +sDh +f+ +g+p++++   a   +++ yH++
     CDO70428.1  78 NLTLMVQADMLAYHVPGEPA-QLGLPDRIGTPEVTQLVANVSAIYSPELTVGFTPACCSDHQSFHTQGFPATQVferAGPIADPMYHNS 165
                    66677777777777777774.3333334445677778888888887787777777888****************887777789999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       181  (0.0100954); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1676.52
//
Query:       CDO70429.1  [L=600]
Description: hypothetical protein BN946_scf184999.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4219.82
//
Query:       CDO70430.1  [L=469]
Description: hypothetical protein BN946_scf184999.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-57  195.1   0.8    5.1e-57  194.1   0.8    1.4  1  Amino_oxidase  Flavin containing amine oxidoreductase
    8.2e-09   35.6   0.2    8.2e-09   35.6   0.2    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00028   20.2   0.2     0.0045   16.3   0.2    2.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0013   18.2   1.1     0.0017   17.8   1.1    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0031   16.8   0.8      0.005   16.1   0.8    1.3  1  FAD_binding_3  FAD binding domain
     0.0041   17.7   1.2      0.036   14.6   0.3    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0044   16.6   4.9     0.0063   16.1   2.3    2.2  3  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.037   13.1   1.4       0.06   12.4   1.4    1.3  1  FAD_binding_2  FAD binding domain
      0.071   12.4   0.4       0.12   11.6   0.4    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.089   12.9   0.1       0.15   12.1   0.1    1.3  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
       0.22   10.8   0.5       0.44    9.7   0.4    1.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.8   3.1e-60   5.1e-57       2     436 ..      45     459 ..      44     462 .. 0.87

  Alignments for each domain:
  == domain 1  score: 194.1 bits;  conditional E-value: 3.1e-60
                    HHHHHHHHHHHTT.EEEEEEESSSSSBTTS-EEEET..T..EEEESS--EEET......TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC CS
  Amino_oxidase   2 aGLaaArqLlsaG.fdVtvlEardrvGGRirtvrsd..G..ylielGamwftg......agnpllellkelgledslslpdpgapkrvlskggref 86 
                    +G +aAr+L+++G  ++t++Ea++ +GGR+++  ++  G  +++elGa+w++g        np+++l++++gl+++        ++  +s+ g   
     CDO70430.1  45 TGVIAARTLHERGiTNFTIVEAKGELGGRLSSQSFGapGkqVTLELGANWVQGtqtgdgPANPIWTLVQKHGLHTHFN-----DWYGSISTYGATG 135
                    89************************************555***************99999*************8766.....7888999999999 PP

                    TTEECHH.HHHHHHHHHHHHHH.CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTT CS
  Amino_oxidase  87 pgdlspv.paewealleqgals.aellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdp 180
                    p d+ +v +++++a+ +   l+ a++ ++ ++l  g ++          l   +++++ +  +++ + d   w++  +p         s   a   
     CDO70430.1 136 PVDFVDVfNNAVDAYTN---LTiAAGARVDKRLVDGTARTG------YSLVGDKSQTAQAMASEYYQFD---WEYAQTP-------EQSSWIA--- 209
                    *******9999999999...223334444444444444444......7777777777777777777778...8888887.......3333333... PP

                    TTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH.TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH..SSEEESC CS
  Amino_oxidase 181 selsaklalpllwelegfggslllprgGlsqlpealae.elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk..ailfsPp 273
                    s+   +++++++   +g + ++ l ++G++  ++a  +  l ++++rln+ V++i+++++gvtv+l +ge ++aD+ ++T +lgvl+   + f+P 
     CDO70430.1 210 SSWGNNFTYNTDVGGFGDDNQMALDERGFKYFIQAEGAeFLQPDQVRLNSTVSKITYSRSGVTVELGSGELLHADYALCTFSLGVLQhdDVVFEPA 305
                    5667778888888888888888888*********99888999****************************************************** PP

                    CSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECC.ECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHH CS
  Amino_oxidase 274 lpdekaeairnlgfgsvnkvilefdrkfwednalgqgvlvseltttlgeafissd.fpsrappgkglvllvyvggdaaneleslsdeelvqavlrd 368
                    lpd+k+eai+++ +++ +k++l+f+ kfw d +           +++g+  ++++   ++  pg+g+     + gd+ +++e l+d+++ ++vl +
     CDO70430.1 306 LPDWKQEAIQSMVMATYTKIFLQFPAKFWFDTE-----MALYADSERGRYPVWQSlDHENFFPGSGI-----IFGDYSQRIEALPDSQVQEEVLGV 391
                    ****************************99976.....78889999999999999666666676666.....669999****************** PP

                    HHHHHT.GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTS CS
  Amino_oxidase 369 Lrklfg.eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgt 436
                    +r++f+   vpep+a++  rWhtdpl+rgsys ++    +e+ ++l+++    rl fAGe+ts++y+g 
     CDO70430.1 392 MRTMFPnVTVPEPIAFHFPRWHTDPLFRGSYSNWPSSFFSEHHENLRAN-VGERLWFAGEATSQKYFGQ 459
                    ***********************************99999999999999.999*************995 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       2.6   4.3e+03       7      22 ..      11      26 ..      10      29 .. 0.78
   2 !   35.6   0.2     5e-12   8.2e-09       1      64 [.      39     111 ..      39     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.6
                   HHHHHHHHHHCCTEEE CS
  NAD_binding_8  7 sGlvaAylLakagfdv 22
                   +Gl+a+++La + ++v
     CDO70430.1 11 AGLLACSALAARALSV 26
                   8999999999876666 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 5e-12
                    EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSSGGG-EECE..TT..CEECTS---EEET....THHHHCHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlllekrdrlGGraasyev..pg..vrvdygahifhgs....gyypnvrrl 64 
                    I+G+G++G  aA++L+++g+ + +++e+   lGGr++s ++  pg  v++++ga+++ g+    g+ + +++l
     CDO70430.1  39 ILGGGVTGVIAARTLHERGItNFTIVEAKGELGGRLSSQSFgaPGkqVTLELGANWVQGTqtgdGPANPIWTL 111
                    89******************77*******************985567**********9985544444555555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.8e-06    0.0045     138     185 ..      30      79 ..      21     187 .. 0.64
   2 ?    0.3   0.0       0.2   3.3e+02     199     232 ..     254     287 ..     241     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
                  CSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS.TTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2 138 lkllpkrivvvGgGyiGvElAaalaklgke.vtlveardrll.raldkel 185
                   +++++ +++ GgG++Gv  A +l++ g    t+vea  +l  r   +++
   CDO70430.1  30 THKKDAAVLILGGGVTGVIAARTLHERGITnFTIVEAKGELGgRLSSQSF 79 
                  45556799*******************99446666665555533333333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.2
                  EEEESCEEEEEEETTEEEEEEETTSCEEEESEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 199 evklgtsvkeidgngeklevvledgeeidadlvv 232
                  +v+l+++v +i+   + ++v+l++ge + ad+ +
   CDO70430.1 254 QVRLNSTVSKITYSRSGVTVELGSGELLHADYAL 287
                  58999*******999999********97666543 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.1     1e-06    0.0017       2      48 ..      37      84 ..      36     192 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGa.kvlLveergvlGGlltsglvatdig 48
                  v++ GGg+ Gv+AA +  ++G  +  +ve +g lGG l+s+  +++ +
    CDO70430.1 37 VLILGGGVTGVIAARTLHERGItNFTIVEAKGELGGRLSSQSFGAPGK 84
                  89*******************84689**************98877666 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.8   3.1e-06     0.005       2      31 ..      35      65 ..      34      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.1e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHE.EEEE CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrv.vlve 31
                   + VlI G+G +G+++a+ L+e+G+ + ++ve
     CDO70430.1 35 AAVLILGGGVTGVIAARTLHERGITNfTIVE 65
                   68**********************9515665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   2.2e-05     0.036       2      35 ..      37      71 ..      36      82 .. 0.90
   2 ?    1.2   0.0      0.33   5.5e+02      57      77 ..     255     274 ..     254     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
                EEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg.kkVtvversdkll 35
                v+++GgG++g+ +A +l+e g  + t+ve++ +l 
  CDO70430.1 37 VLILGGGVTGVIAARTLHERGiTNFTIVEAKGELG 71
                89*******************7799******9998 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.33
                 EECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  57 vllntkveeiegsedgvesvk 77 
                 v+ln++v +i+ s +gv+ v+
  CDO70430.1 255 VRLNSTVSKITYSRSGVT-VE 274
                 89***********99954.54 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.3   3.9e-06    0.0063       2      38 ..      37      76 ..      36      94 .. 0.86
   2 ?   -1.6   0.0      0.93   1.5e+03     196     268 ..     153     225 ..     111     278 .. 0.50
   3 ?   -0.8   0.0      0.54   8.7e+02     263     303 ..     367     406 ..     335     452 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
                EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGG CS
         DAO  2 vviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSg 38
                v+i GGG++G+ +A+ L +rg    t++e++ ++g   S+
  CDO70430.1 37 VLILGGGVTGVIAARTLHERGitnFTIVEAKGELGGRLSS 76
                89****************************9999844444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.93
                 EEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE...EEETTTTEEEEEETTSEEE...EEES CS
         DAO 196 vVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe...tdddgrgvyvtprkdgrvl...vGgt 268
                 + +aaGa +d  l    +     +++ g++lv ++ + ++ ++   ++       + +  + ++  + ++ ++   vGg 
  CDO70430.1 153 LTIAAGARVDkRL---VDG----TARTGYSLVGDKSQTAQAMASEYYQFDWeyaQTPEQSSWIASSWGNNFTYntdVGGF 225
                 3344444444333...222....556666666655555444443333332255333333333333333333333334443 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.54
                 EEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGG...CGEE CS
         DAO 263 vlvGgtadeesgdddpevdeedidellealrklfPql...gdvl 303
                 +++G       +  ++ +d++  +e+l  +r++fP++   +++ 
  CDO70430.1 367 IIFGDY---SQRI-EALPDSQVQEEVLGVMRTMFPNVtvpEPIA 406
                 555553...2333.35899999999*********9953333343 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.4   3.7e-05      0.06       2      37 ..      37      74 ..      36      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGS.G CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefgg.a 37
                   v++ G+G+ G  AA +++e+G  + ++ve ++e gg  
     CDO70430.1 37 VLILGGGVTGVIAARTLHERGItNFTIVEAKGELGGrL 74
                   89*******************************99953 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   7.6e-05      0.12      24      49 ..      32      55 ..      20      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.6e-05
                 TCB---EEEEESTSHHHHHHHHHHHH CS
  AlaDh_PNT_C 24 pgvepakvlviGgGvaGlqAiatakg 49
                 +  + a vl++GgGv G+ A++t ++
   CDO70430.1 32 K--KDAAVLILGGGVTGVIAARTLHE 55
                 4..789***************99876 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.3e-05      0.15       9      43 ..      31      65 ..      20      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEE CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaN 43
                  + k++ vl++G G ++  +a+ L+++g+++ +++ 
    CDO70430.1 31 HKKDAAVLILGGGVTGVIAARTLHERGITNFTIVE 65
                  457999**************************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   0.00027      0.44       1      32 [.      38      70 ..      38      76 .. 0.88
   2 ?   -4.0   0.0       4.1   6.6e+03      98     120 ..     255     277 ..     253     286 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.ni 32
                 +I G+G  G+ aa +l + g+++++i+E + ++
   CDO70430.1 38 LILGGGVTGVIAARTLHERGITNFTIVEAKgEL 70
                 699*************************65365 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.1
  Pyr_redox_3  98 iklfeeVesvkkedegfevetsk 120
                  ++l+++V +++ +++g +ve  +
   CDO70430.1 255 VRLNSTVSKITYSRSGVTVELGS 277
                  55666666666666666665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3110.63
//
Query:       CDO70431.1  [L=417]
Description: hypothetical protein BN946_scf184999.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-20   72.5   0.0    9.3e-20   71.6   0.0    1.6  2  Amidohydro_2  Amidohydrolase
      0.006   16.0   0.0      0.013   14.8   0.0    1.5  2  TatD_DNase    TatD related DNase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.29   2.6e+03       1      14 [.      20      64 ..      20     127 .. 0.62
   2 !   71.6   0.0     1e-23   9.3e-20     134     271 ..     250     375 ..     172     409 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.29
                  EEEEEEE..SHHH...............................C CS
  Amidohydro_2  1 iDvHaHllppeaa...............................i 14
                  iD HaH++ +e+                                +
    CDO70431.1 20 IDNHAHPFLREECkyahpfegliseatgekatrdathtmacyraT 64
                  788999888777777777777766666666655555555555551 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 1e-23
                   HHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHHSSEEECCHHCH CS
  Amidohydro_2 134 ifealeelglpvdihtGpspewlfggpqettraiqplllsgvarkfPnlkivlaHgGgpserlraalellarrpnvyvklsglytellyfdspladp 230
                   ++++++  g pv++htG      +g+ ++t++ + p +l  ++  +Pn+kivl H ++p    ++a +l a ++nvy++++ +    ++f sp+  +
    CDO70431.1 250 TMRIAGQCGKPVQFHTG------LGDNDITVTKSSPSHLQPLIKAYPNTKIVLLHSSYP--FTKEAGYLTAVYDNVYLDFGEI----FPFLSPDGQR 334
                   5678899999*****99......************************************..*******************998....678******* PP

                   HHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH CS
  Amidohydro_2 231 palarlieavgpdrilfGsDyPhptleaepealalldlval 271
                   +++++++e+++ ++i++++D  ++++  ++++l++++ + +
    CDO70431.1 335 QVVREVLELAPTNKIMWSTDGHFWPESYYLGTLQARQALYE 375
                   **************************999999988776555 PP

>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.31   2.7e+03       1      27 [.      20      49 ..      20      98 .. 0.48
   2 !   14.8   0.0   1.5e-06     0.013     116     238 ..     250     387 ..     239     408 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.31
                EEEEE-TTS.CCCTTT....HHHHHHHHHHTT CS
  TatD_DNase  1 iDaHcHlds.kefeed....reeileraeeag 27
                iD+H+H+   +e+  +     e+ +++a  ++
  CDO70431.1 20 IDNHAHPFLrEEC--KyahpFEGLISEATGEK 49
                7888887663332..11222333333333333 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.5e-06
                 HHHHHHHTTEEEEEEEES-HH..........HHHHHHHHCGGCCSEEEETT...--S-HHHHHHHHHTTEEEEE-GGGGTTTTHH....HHHHHHHS-G CS
  TatD_DNase 116 qlrlAkelklplviHlrkaee..........dlleilkeaaeakakvvlHs...fsgsaeeakkflklgyyislsglltfknake....lrelvkavpl 197
                  +r+A ++++p++ H++  ++          +l  ++k++ ++k  v lHs   f+ +a  ++++   ++y+ ++ + +f +       +re+++  p 
  CDO70431.1 250 TMRIAGQCGKPVQFHTGLGDNditvtksspsHLQPLIKAYPNTK-IVLLHSsypFTKEAGYLTAVY-DNVYLDFGEIFPFLSPDGqrqvVREVLELAPT 346
                 589**************955544455667769999999999998.799***766777777777766.589999999999998444224577777999** PP

                 GGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS- CS
  TatD_DNase 198 drlLiETDaPyltpkpyrgkrnepanvayvveklaelkalt 238
                 ++++  TD  +  +  y g+ +  +++ +v+e   + ++lt
  CDO70431.1 347 NKIMWSTDGHFWPESYYLGTLQARQALYEVLESSVKRWELT 387
                 ********988888888888777777778887777666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.98
# Mc/sec: 1281.17
//
Query:       CDO70432.1  [L=284]
Description: hypothetical protein BN946_scf184999.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.33s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 1720.44
//
Query:       CDO70433.1  [L=109]
Description: hypothetical protein BN946_scf184999.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   47.8   0.2    4.3e-06   26.9   0.0    2.5  2  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.4e-10   4.3e-06       5      50 ..      16      53 ..      12      55 .. 0.82
   2 !   18.5   0.0     1e-07    0.0018      51      76 .]      76     100 ..      64     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.4e-10
        BolA  5 lkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhR 50
                +  +hle+ed S+        g+++ ++v +vs+aFegk+++arhR
  CDO70433.1 16 MPVTHLEIEDTSN--------GCGENYSVFVVSPAFEGKNTLARHR 53
                5567777777774........67788*******************9 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1e-07
        BolA  51 lvyalLkeelakgiHALslktktpee 76 
                  v+++Lk+e+a+ +HA+s kt tp++
  CDO70433.1  76 QVNEVLKNEIAQ-MHAFSQKTLTPAQ 100
                 69**********.***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 708.39
//
Query:       CDO70434.1  [L=652]
Description: hypothetical protein BN946_scf184999.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-57  192.4   0.0    1.7e-56  191.5   0.0    1.5  1  Pkinase         Protein kinase domain
    2.8e-30  105.5   0.0    2.2e-19   69.8   0.0    2.8  3  Pkinase_Tyr     Protein tyrosine kinase
    0.00011   22.2   0.0    0.00041   20.4   0.0    1.8  2  APH             Phosphotransferase enzyme family
    0.00019   20.9   0.0       0.14   11.5   0.0    2.5  3  Kinase-like     Kinase-like
    0.00072   19.0   0.0     0.0013   18.2   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.025   13.4   0.0      0.042   12.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
      0.076   12.6   0.0       0.15   11.7   0.0    1.4  1  RIO1            RIO1 family
       0.11   12.2   0.0         16    5.0   0.0    2.2  2  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5   0.0   7.6e-60   1.7e-56       3     264 .]     177     460 ..     175     460 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.5 bits;  conditional E-value: 7.6e-60
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                 +++ lGeG+ G V  + +k tg+ +A+K ikk++ + ++  +v+ E  ilk+l   p+   l+++fe++d+++l+++y++gg+l+++++++g+l+ + a
  CDO70434.1 177 VIRVLGEGGQGLVSLVQDKITGNLYALKAIKKHRLQTRDLPTVFVEQDILKTLVgRPFFTSLKGSFEDEDYFFLLMDYCPGGDLDERIRKEGKLPTDVA 275
                 5789*********************************999*************99******************************************** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..............................BCTTTSCGGGS-HHHH CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..............................ltsfvgtseYlAPEvl 169
                 +++a+qi+ ++e l +++i+HrD+Kp+NiL+  ++e+ itDFGla+ + ++ +                                s +gt  Y+APE+ 
  CDO70434.1 276 RRYAAQIVLAMEDLRRNRIVHRDVKPKNILLTAEDEVIITDFGLARTFGRTIEqqpwrarqiwqlmedgtgdgglqtgsqrdkSVSGCGTFGYIAPEMF 374
                 ********************************9999**************99999**************************999999***********9 PP

                 TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 170 keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  + eys +vDvWs +v+lye+l gk pf  ++++  +++el +        +   + ++  se++ +a+dll+++l+kdp kR+t+e++++hp++
  CDO70434.1 375 -SAEYSYEVDVWSFAVTLYEMLHGKLPFGFDRTDGATTHELIT--------RSIILPVEIGSEVDADATDLLQSMLAKDPLKRPTWEQIKEHPWF 460
                 .889*************************66666644444433........455678999**********************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   9.8e-23   2.2e-19       5     153 ..     179     323 ..     175     342 .. 0.86
   2 !   32.0   0.0   3.3e-11   7.4e-08     162     257 ..     359     456 ..     346     457 .. 0.78
   3 ?   -0.5   0.0      0.27   6.1e+02     164     183 ..     502     522 ..     489     528 .. 0.70

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 9.8e-23
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS.SHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeea.teeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  + lGeG  G V   + k     +    a+K +k++  + ++   ++ e +i+k+l   p   +l g   +e+  +++++y++gGdL++ +rk+   kl
   CDO70434.1 179 RVLGEGGQGLVSLVQDK----ITGNLYALKAIKKHRlQTRDLPTVFVEQDILKTLvGRPFFTSLKGSFEDEDYFFLLMDYCPGGDLDERIRKE--GKL 270
                  67888888888776666....55566678888655414455789999********9************************************8..999 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                   ++   ++a+q+  +me L ++++vHrd+  +N+Ll+ ++ v i+DfGLar+ 
   CDO70434.1 271 PTDVARRYAAQIVLAMEDLRRNRIVHRDVKPKNILLTAEDEVIITDFGLARTF 323
                  99999**********************************************98 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 3.3e-11
                  TTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGT..TTTSHHHHHHHHHHTTEE..S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 162 keeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp..ypglkneevleklkegkr..lekpekcpeelyelmkkcweedpeeRptfsel 255
                  + ++   + ++apE+++  +++ + DvWsf+v+l+E++  g+ p  + + + +++ e ++++    +e  +++ ++ ++l+++ +++dp +Rpt +++
   CDO70434.1 359 SVSGCGTFGYIAPEMFS-AEYSYEVDVWSFAVTLYEMLH-GKLPfgFDRTDGATTHELITRSIIlpVEIGSEVDADATDLLQSMLAKDPLKRPTWEQI 454
                  4455566789****875.68******************9.**99444556677777777777762245567899999*******************99 PP

                  HH CS
  Pkinase_Tyr 256 ve 257
                   e
   CDO70434.1 455 KE 456
                  86 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.27
                  SSTSG.GGGS-HHHHHHSEEE CS
  Pkinase_Tyr 164 eaklp.vkWmapEslkekkft 183
                  +a+ p ++W+apE + ++++ 
   CDO70434.1 502 KAEYPfFHWIAPELFVKQTYA 522
                  44444268******9999886 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.43   9.7e+02      65      85 ..     243     265 ..     222     282 .. 0.75
   2 !   20.4   0.0   1.8e-07   0.00041     151     197 ..     267     321 ..     250     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.43
                 EETTEEEEEEE----EE-SS..H CS
         APH  65 eeigllfalieyvpgrsllr..k 85 
                 e++ + f+l+ y+pg +l++  +
  CDO70434.1 243 EDEDYFFLLMDYCPGGDLDEriR 265
                 566678**********9999552 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.8e-07
                 H......HHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 151 q......vlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +      v+++ aa          + +++H+D +p N+l++++d  +  + Df++a+
  CDO70434.1 267 EgklptdVARRYAAQIVLamedLRRNRIVHRDVKPKNILLTAEDEVI--ITDFGLAR 321
                 3444444455555554445666788****************999999..99***997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.5   3.5e+03      18      43 ..     179     204 ..     174     208 .. 0.86
   2 !   11.5   0.0   6.2e-05      0.14     142     195 ..     272     324 ..     258     331 .. 0.82
   3 !    6.5   0.0    0.0019       4.4     225     257 ..     376     408 ..     366     441 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.5
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavk 43 
                   +l++g++++v +v+d+ tg+  a+k
   CDO70434.1 179 RVLGEGGQGLVSLVQDKITGNLYALK 204
                  689999************99988877 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.2e-05
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvrag 195
                   ++ar +  +q++     L+ + +vh +++++n+ll  +  +++++f+  ++ g
   CDO70434.1 272 TDVARRYA-AQIVLAMEDLRRNRIVHRDVKPKNILLTAEDEVIITDFGLARTFG 324
                  46788887.88999999******************************8666655 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0019
  Kinase-like 225 tkmthkldaWqlGlviyriwclklPltlateea 257
                  +++++++d+W   ++ y +   klP++ +  ++
   CDO70434.1 376 AEYSYEVDVWSFAVTLYEMLHGKLPFGFDRTDG 408
                  789***********************9876655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.6e-07    0.0013     104     186 ..     259     340 ..     249     346 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.6e-07
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl..rlr.adrwrekdLarL 186
                 dL++ ++k  +l+  + r+   ++  ++++l r  + H+d+ +knill +e+    e+++ D+  ar+  r+  ++ wr + + +L
  CDO70434.1 259 DLDERIRKEGKLPTDVARRYAAQIVLAMEDLRRNRIVHRDVKPKNILLTAED----EVIITDFGLARTfgRTIeQQPWRARQIWQL 340
                 8888999877799999***********************************9....999999865443225554667777666655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05     0.042     316     365 ..     283     326 ..     279     391 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsdd 365
                     + + + L    +i+HrD+  +Nil+t     +e++ ++ D+ la + +++
      CDO70434.1 283 VLAMEDLR-RNRIVHRDVKPKNILLT-----AEDEVIITDFGLARTFGRT 326
                     66777888.99***************.....7788899999998888763 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.5e-05      0.15      84     150 ..     251     318 ..     247     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
                 EEE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  84 vmefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 +m+++   g    ++++  +  ++ a++++++++ +m+ l  ++++vH D+   N+l++ + +v+i D++
  CDO70434.1 251 LMDYCP-GGDLDERIRKEGKlpTDVARRYAAQIVLAMEDLR-RNRIVHRDVKPKNILLTAEdEVIITDFG 318
                 566665.3444445555553357788999999999999988.9***************998688888885 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0073        16      23      58 ..     174     211 ..     162     228 .. 0.80
   2 ?    4.8   0.0    0.0085        19     171     204 ..     272     305 ..     264     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0073
        FTA2  23 diefleyLgkglhsiVlkv..kirgkeYALKlFrflea 58 
                 d+  + +Lg+g ++ V  v  ki g+ YALK  ++++ 
  CDO70434.1 174 DFCVIRVLGEGGQGLVSLVqdKITGNLYALKAIKKHRL 211
                 6677999999999977666448*********8777654 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0085
        FTA2 171 eelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 + +  +++ +++  +++l++  Iv+rD+k++n++
  CDO70434.1 272 TDVARRYAAQIVLAMEDLRRNRIVHRDVKPKNIL 305
                 5667788899999*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.57
# Mc/sec: 3421.43
//
Query:       CDO70435.1  [L=385]
Description: hypothetical protein BN946_scf184999.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-08   33.7  29.3      0.014   15.9   0.1    6.6  5  SMP       Seed maturation protein
    0.00011   22.1   0.2        9.4    6.4   0.0    4.1  4  DUF2384   Protein of unknown function (DUF2384)
  ------ inclusion threshold ------
      0.038   14.2   0.0         96    3.3   0.0    4.1  4  NUMOD3    NUMOD3 motif (2 copies)


Domain annotation for each model (and alignments):
>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.3e-06     0.014      12      51 ..      19      57 ..       9      64 .. 0.87
   2 !   10.6   0.8    0.0001      0.63      23      53 ..     105     142 ..      80     144 .. 0.89
   3 !    8.4   0.1   0.00051         3      26      53 ..     182     216 ..     177     219 .. 0.62
   4 !    5.2   3.4     0.005        30      39      54 ..     257     285 ..     227     286 .. 0.64
   5 !    6.6   2.7    0.0018        11      26      58 ..     326     372 ..     300     373 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-06
         SMP 12 klagdkpVtpeDAaavqaAEaraageartapgGvAaaaqa 51
                +l+  k + ++DA ++ + E ra+g  r++pg +A++aqa
  CDO70435.1 19 GLVNLKDISEADARRIMSEEHRALG-YRPPPGSLASQAQA 57
                567779999****************.6779999******8 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0001
         SMP  23 DAaavqaAEaraagea.r......tapgGvAaaaqaAA 53 
                 D  a+ +AEar + ++ +      ++p  +A+ aq+AA
  CDO70435.1 105 DLDAIGEAEARKLMSDeHkalgyrPPPDSLASEAQSAA 142
                 889*******999988447888889************9 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00051
         SMP  26 avqaAEa........raageartapgGvAaaaqaAA 53 
                 +v +AEa        ra+g  r++pg +A++aq+ A
  CDO70435.1 182 RVGEAEArrlmseehRALG-YRPPPGSLASTAQSEA 216
                 5666666222222226666.348999*******855 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.005
         SMP  39 r.............tapgGvAaaaqaAAd 54 
                 r             ++ g +Aa+aq+AA 
  CDO70435.1 257 RklmseehktlgyrPPAGSLAATAQSAAS 285
                 1444444555555356666********96 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0018
         SMP  26 avqaAEaraagear..............tapgGvAaaaqaAAdaNer 58 
                 av  AE+ ++ +++              ++ g +A++aq+ Ad+N+r
  CDO70435.1 326 AVVNAEVPVTKRMAsslvseahkarghlPESGTIASTAQSLADKNAR 372
                 455555544443324555555555555578888************98 PP

>> DUF2384  Protein of unknown function (DUF2384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0097        58       9      29 ..      28      48 ..       6      63 .. 0.81
   2 !    5.9   0.0    0.0021        13       8      41 ..     110     143 ..     104     145 .. 0.85
   3 !    6.4   0.0    0.0016       9.4       8      28 ..     184     204 ..     165     213 .. 0.88
   4 ?    0.1   0.0      0.14   8.3e+02      12      30 ..     256     274 ..     251     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0097
     DUF2384  9 eeraarWLrrPnpaLggrtPl 29
                e++a+r + + ++aLg r P 
  CDO70435.1 28 EADARRIMSEEHRALGYRPPP 48
                7889999**********9995 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0021
     DUF2384   8 deeraarWLrrPnpaLggrtPldlldteaGarlV 41 
                 +e++a++ +   ++aLg r P d l +ea  ++V
  CDO70435.1 110 GEAEARKLMSDEHKALGYRPPPDSLASEAQSAAV 143
                 4677899**************9999988877776 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0016
     DUF2384   8 deeraarWLrrPnpaLggrtP 28 
                 +e++a+r + + ++aLg r P
  CDO70435.1 184 GEAEARRLMSEEHRALGYRPP 204
                 47889*************988 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.14
     DUF2384  12 aarWLrrPnpaLggrtPld 30 
                 a++ + + ++ Lg r P++
  CDO70435.1 256 ARKLMSEEHKTLGYRPPAG 274
                 6668999*********986 PP

>> NUMOD3  NUMOD3 motif (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.54   3.2e+03       3      11 ..      34      42 ..      33      42 .. 0.79
   2 ?    2.9   0.0     0.021   1.3e+02       7      18 ..     113     126 ..     112     131 .. 0.77
   3 ?    2.3   0.0     0.035   2.1e+02       7      17 ..     187     197 ..     186     205 .. 0.76
   4 ?    3.3   0.0     0.016        96       7      18 ..     255     268 ..     254     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.54
      NUMOD3  3 khSeetKaK 11
                 +See++a+
  CDO70435.1 34 IMSEEHRAL 42
                689999985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
      NUMOD3   7 etKaKmsealk..G 18 
                 e +++ms+ +k  G
  CDO70435.1 113 EARKLMSDEHKalG 126
                 8899***9999664 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.035
      NUMOD3   7 etKaKmsealk 17 
                 e +++mse ++
  CDO70435.1 187 EARRLMSEEHR 197
                 78999999987 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.016
      NUMOD3   7 etKaKmsealk..G 18 
                 e +++mse +k  G
  CDO70435.1 255 EARKLMSEEHKtlG 268
                 889*****999664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2489.76
//
Query:       CDO70436.1  [L=321]
Description: hypothetical protein BN946_scf184999.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-62  210.1   0.1    3.9e-62  209.7   0.1    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
    1.8e-07   31.8   0.0    4.2e-07   30.6   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    2.4e-05   24.9   0.0    5.9e-05   23.6   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    0.00013   21.8   0.0    0.00022   21.1   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00038   20.3   0.0     0.0008   19.3   0.0    1.5  2  Methyltransf_23  Methyltransferase domain
    0.00042   19.9   0.1     0.0013   18.3   0.0    1.7  2  MTS              Methyltransferase small domain
    0.00056   20.6   0.0     0.0012   19.5   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
     0.0018   17.6   0.0     0.0037   16.6   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0033   16.8   0.0     0.0058   16.0   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
     0.0092   15.8   0.0      0.022   14.6   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.021   13.9   0.0      0.046   12.8   0.0    1.5  1  DREV             DREV methyltransferase
      0.024   14.3   0.1      0.078   12.6   0.0    1.8  2  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
      0.041   13.5   0.1       0.34   10.5   0.0    2.2  2  Cons_hypoth95    Conserved hypothetical protein 95
      0.041   13.7   0.2        9.4    6.1   0.1    2.4  2  UPF0146          Uncharacterised protein family (UPF0146)
      0.042   13.2   0.0      0.074   12.4   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.051   13.2   0.0      0.086   12.4   0.0    1.3  1  NodS             Nodulation protein S (NodS)
      0.085   12.6   0.1       0.21   11.3   0.0    1.7  2  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7   0.1   3.7e-65   3.9e-62       6     250 ..      40     277 ..      37     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 209.7 bits;  conditional E-value: 3.7e-65
                 XGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHHCTTTCCC CS
      RrnaAD   6 ksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeevtekdsih 101
                  ++gq++lkn++++++I+d++nl+++++vle+gpG+G+lT+++++ ak+v+++E+d+r+a++l+k+++   +++kl+++  Df k+e+p++        
  CDO70436.1  40 ERFGQHILKNPQTAQSIVDAANLRPTDKVLEVGPGTGNLTVRILEKAKHVTAVEMDPRMAAELTKRVQgkpEQRKLEIIIGDFVKAELPYFD------- 131
                 689*****************************************************************99999*****************77....... PP

                 CEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S-- CS
      RrnaAD 102 qeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedlpq 200
                     +++n+Py+is++lv++ll+ +r+ ++ ++l++q+efa rl+a pgs ++srls +++++  v l++ v+k++f+Pppkv+s++v+  ++d++ p 
  CDO70436.1 132 ---VCISNTPYQISSPLVFRLLS-HRPLFRVAILMFQREFATRLVATPGSALWSRLSANVQLYSKVDLIMHVNKNNFRPPPKVESSVVRVVPRDPP-PP 225
                 ...7******************7.88889******************************************************************9.79 PP

                 S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT...T--TTTCCCC CS
      RrnaAD 201 kdlkkyesvvrkllnrkrktlstslksllpggelqalsst..gindnalvkk 250
                 ++  +++ + r+++ r++kt+ +++  ++ ++ l+++ +t   +n+ +  ++
  CDO70436.1 226 VEFGEFDGLGRIVFSRRNKTVHANFMAKGVMEMLESNWKTwaSVNEVMVEDN 277
                 999*******************************999999877777665444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     4e-10   4.2e-07       1      73 [.      68     137 ..      68     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEEEST CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpfedgsfDlvvssga 73 
                      vL++G GtG+lt +++++   ++vt+v+++++m ++  +r++ + +   ++e++ gd+ + +++   fD+++s+ +
       CDO70436.1  68 VLEVGPGTGNLTVRILEKA--KHVTAVEMDPRMAAELTKRVQGK-PeqrKLEIIIGDFVKAELPY--FDVCISN-T 137
                      9****************96..9*******************873.2356*********9988886..9*99995.3 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.6e-08   5.9e-05       1      68 [.      69     136 ..      69     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.6e-08
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvss 68 
                      L+vG GtG l+  + +++++v++v+++++m +   ++++++++  k+e++ +d+ k  ++   fD+++s+
       CDO70436.1  69 LEVGPGTGNLTVRILEKAKHVTAVEMDPRMAAELTKRVQGKPEqrKLEIIIGDFVKAELPY--FDVCISN 136
                      89******************************99999999999999*********976664..9999987 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.1e-07   0.00022      58     156 ..      49     142 ..      40     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.1e-07
                 -HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEEEESSBBSS- CS
        PCMT  58 aphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdaihvgaaapei 155
                 +p++   +++  +l++ ++vLevG G+G lt+   r++++  +v ++e  +++++e +++++ +  + ++ +++gD     +++ PY  + ++ ++ +i
  CDO70436.1  49 NPQTAQSIVDAANLRPTDKVLEVGPGTGNLTV---RILEKAKHVTAVEMDPRMAAELTKRVQGKPEQrKLEIIIGDFV---KAELPYFDVCISNTPYQI 141
                 5777778888999***************9997...6677777788****************976555499****9964...456666666666655555 PP

                 - CS
        PCMT 156 P 156
                  
  CDO70436.1 142 S 142
                 5 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.6e-07    0.0008      18      70 ..      60     112 ..      38     151 .. 0.80
   2 ?   -3.1   0.0       5.6   5.9e+03     142     160 ..     277     293 ..     233     294 .. 0.48

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.6e-07
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdq 70 
                      ++lr+  +vL++G+GtG+l+  + e+ ++vt+v+++p++ +++ k+ + +++q
       CDO70436.1  60 ANLRPTDKVLEVGPGTGNLTVRILEKAKHVTAVEMDPRMAAELTKRVQGKPEQ 112
                      4689999***********999999999**********9999875444433333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.6
  Methyltransf_23 142 hisffsarslkelleeaGl 160
                       ++f   + +++ l+e G+
       CDO70436.1 277 NVNFK--QKVEQVLQETGF 293
                      22222..356666666666 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.2e-06    0.0013      30     108 ..      63     140 ..      51     153 .. 0.77
   2 ?   -1.9   0.1         2   2.1e+03      56      92 ..     254     290 ..     245     302 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-06
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB.HHHHHHHHHHH.HHTTGCEEEEE-STTTTSTTS-EEEEEE---ST CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvd.arAlesakenl.eanklevevvasdvleeveekkfdlivsNPPfh 108
                 + ++kvl +G G+G l++ ++++ ++  vt+v+ d  +A e++k+   + ++ ++e++  d +++     fd+ +sN P++
  CDO70436.1  63 RPTDKVLEVGPGTGNLTVRILEKAKH--VTAVEMDpRMAAELTKRVQgKPEQRKLEIIIGDFVKAEL-PYFDVCISNTPYQ 140
                 46789*****************9999..55666552346666666550555556*******999887.8*********987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 .EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTT CS
         MTS  56 aevtlvdvdarAlesakenleanklevevvasdvlee 92 
                   +++++ +++  +s +e + + +++ +   ++vl+e
  CDO70436.1 254 GVMEMLESNWKTWASVNEVMVEDNVNFKQKVEQVLQE 290
                 4567888888888888887777777755555555544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.2e-06    0.0012       1      72 [.      69     135 ..      69     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.2e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvva 72 
                      Le+G GtG+l+ ++lek   +++t+v+ +p++ +   ++ + + ++   ++e+   d  + + + +fD+ ++
       CDO70436.1  69 LEVGPGTGNLTVRILEK--AKHVTAVEMDPRMAAELTKRVQGKPEQ--RKLEIIIGDFVKAELP-YFDVCIS 135
                      8****************..**************6666666666554..4666666666665555.8888765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.5e-06    0.0037      52     126 ..      54     127 ..      44     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG--- CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde 126
                 + i++ ++l+p +++L++G G G+l++r  e+   +v ++ +    a+   krv+    +rk e+ + d+   + 
  CDO70436.1  54 QSIVDAANLRPTDKVLEVGPGTGNLTVRILEK-AKHVTAVEMDPRMAAELTKRVQGKPEQRKLEIIIGDFVKAEL 127
                 678999**************************.999*****************************9999987655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.5e-06    0.0058      50     132 ..      52     134 ..      28     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.5e-06
                     HHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEE CS
  Methyltransf_2  50 vakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDail 132
                     +a++++ a +l++  ++++vG GtG l   i ++  +++++ +D    +e  k+    +e++++e + Gdf k +lP  D+ +
      CDO70436.1  52 TAQSIVDAANLRPTDKVLEVGPGTGNLTVRILEKAKHVTAVEMDPRMAAELTKRVQGKPEQRKLEIIIGDFVKAELPYFDVCI 134
                     4678999999**********************************5555555555558999*****************999865 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05     0.022       4      83 ..      65     138 ..      62     200 .. 0.86
   2 ?   -2.1   0.0       2.9     3e+03      45      52 ..     285     292 ..     248     311 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnev 83 
                      + +vl++G GtG+lt ++ e+    ++v+ +++++++    +++ q +  +  +e  +gd+ ++e  l    fD+ +sn +
       CDO70436.1  65 TDKVLEVGPGTGNLTVRILEK---AKHVTAVEMDPRMAAELTKRVQGKPEQrKLEIIIGDFVKAE--LP--YFDVCISNTP 138
                      568****************66...578***********9999999988777799*********98..55..59*9999843 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
  Methyltransf_31  45 renaqklg 52 
                      ++ +q+ g
       CDO70436.1 285 EQVLQETG 292
                      23333334 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.046      93     135 ..      63     105 ..      32     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
        DREV  93 qedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk 135
                 + + k+l++G G G++t r+ +  ++v a e+  +m   l k+
  CDO70436.1  63 RPTDKVLEVGPGTGNLTVRILEKAKHVTAVEMDPRMAAELTKR 105
                 44789********************************999885 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.4e-05     0.078      21      78 ..      67     114 ..      53     133 .. 0.81
   2 ?   -1.9   0.0         2   2.1e+03      35      73 ..     254     291 ..     251     305 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.4e-05
  Methyltransf_28  21 rliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQknrLkekakevk 78 
                      +++E+GpG+G L   +L+  ++           + vE+ p+++++  +r+++k ++ k
       CDO70436.1  67 KVLEVGPGTGNLTVRILEKAKHV----------TAVEMDPRMAAELTKRVQGKPEQRK 114
                      799***********999877655..........7799999999999999999876555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
  Methyltransf_28  35 dvLrtlrkflpefyealeyhlvEaSpqlrerQknrLkek 73 
                       v++ l+++  + +++ + ++vE + + +++ ++ L+e+
       CDO70436.1 254 GVMEMLESN-WKTWASVNEVMVEDNVNFKQKVEQVLQET 291
                      566666666.44467777788888888888888888875 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00032      0.34      43     162 ..      66     175 ..      54     223 .. 0.84
   2 ?    0.6   0.1      0.36   3.8e+02      61     102 ..     240     279 ..     233     311 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
                    -EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHH CS
  Cons_hypoth95  43 arvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlellee 138
                     +vL++  G+G l +  l  +ak++++ve+d+++++ l + ++    + + ++++ d ++a l      ++fd+   + Py+ +     v++ll  
     CDO70436.1  66 DKVLEVGPGTGNLTVRILE-KAKHVTAVEMDPRMAAELTKRVQGKPEQRKLEIIIGDFVKAEL------PYFDVCISNTPYQISS--PLVFRLLS- 151
                    5688899999999998775.68*********************99988899999998887653......5699999999999995..56777776. PP

                    TT-EEEEEEEEEEEECCSSS--.- CS
  Cons_hypoth95 139 kkllkenalvvvetekekelpesp 162
                    ++ l + a++++++e ++ l+  p
     CDO70436.1 152 HRPLFRVAILMFQREFATRLVATP 175
                    566666777777777776666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.36
                    HTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HH CS
  Cons_hypoth95  61 SRgakkavlvekdkeavkilkenleelkleeetaelkedale 102
                    SR  k +++  + k ++++l+ n+++    +  ++++ed+++
     CDO70436.1 240 SRRNKTVHANFMAKGVMEMLESNWKTWASVN--EVMVEDNVN 279
                    6777777777777777888888888877665..333333332 PP

>> UPF0146  Uncharacterised protein family (UPF0146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.016        17       4      52 ..      55     102 ..      51     113 .. 0.79
   2 ?    6.1   0.1     0.009       9.4      63      90 ..     185     217 ..     182     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
                 HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S....S CS
     UPF0146   4 lakkiaeenargkvvEvGiGrkldvaealakrgvdlvatDikekkakeg 52 
                  ++ +a++  + kv EvG G+     + l k    ++a++++++ a e 
  CDO70436.1  55 SIVDAANLRPTDKVLEVGPGTGNLTVRILEKA-KHVTAVEMDPRMAAEL 102
                 556667777788********999888888887.8999999999977654 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.009
                 --HHHHTTEEEEEEE.....S--TTSHHHHHHH CS
     UPF0146  63 PnleiYkgadliYsl.....RpPaelqsaildv 90 
                  n+++Y  +dli  +     RpP+ ++s++++v
  CDO70436.1 185 ANVQLYSKVDLIMHVnknnfRPPPKVESSVVRV 217
                 58999******975433333***********98 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05     0.074      38     103 ..      55     118 ..      38     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEE CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.niefl 103
                       + +  + ++  kvl+v  Gtg+l+++++++++   +v+ +++++ m  +  k+++ +  + ++e +
       CDO70436.1  55 SIVDAANLRPTDKVLEVGPGTGNLTVRILEKAK---HVTAVEMDPRMAAELTKRVQGKPEQrKLEII 118
                      466777888889****************99876...5788889999999999998866554455555 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.2e-05     0.086      43      92 ..      64     113 ..      47     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.2e-05
        NodS  43 siadalevGcaaGalterlapyckrltvvdvveeaiararervkesshis 92 
                    ++levG  +G lt+r+   +k++t v++ ++  a   +rv+ +++  
  CDO70436.1  64 PTDKVLEVGPGTGNLTVRILEKAKHVTAVEMDPRMAAELTKRVQGKPEQR 113
                 56789*****************************9999999999887654 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.21      98     146 ..      62     108 ..      48     143 .. 0.81
   2 ?   -2.4   0.0       3.2   3.3e+03     140     140 ..     259     259 ..     233     299 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHH CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkenikl 146
                  ++ + V++v  G G +++ i    kak v a++++P+    l++ ++ 
  CDO70436.1  62 LRPTDKVLEVGPGTGNLTVRILE--KAKHVTAVEMDPRMAAELTKRVQG 108
                 678999***************98..************988777777665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.2
                 H CS
      Met_10 140 l 140
                 l
  CDO70436.1 259 L 259
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2124.05
//
Query:       CDO70437.1  [L=546]
Description: hypothetical protein BN946_scf184999.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.85    9.5  12.4       0.12   12.3   7.9    1.7  2  SPX       SPX domain


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   7.9   6.6e-06      0.12      55     192 ..      46     188 ..      17     192 .. 0.56
   2 ?   -1.3   0.1     0.089   1.6e+03     100     122 ..     228     247 ..     198     365 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.6e-06
         SPX  55 dskkksse...rtepstsaaadesgnsaadasssepkdeae...slprrsplsrssrssssygglvssppsansssssddssesnpadssssssssese 147
                 + +    +   r +p++s+++++++n+a++ ++s p+ +     s+++ ++ s  s+ s+   + +++pp ++++s  ++s +++  +   +s ++ s+
  CDO70437.1  46 PPPP---KpeyRPPPPPSRTSSTASNQAKPPAPSVPIRRTGssaSSSLATSRSVASEASLVSPSAPPRPPPRSTHSAASHSLSPS--PPLPTSIPVPSG 139
                 2222...255577777777777777666666666666555454444444444445555555555556666555555555555555..555555555555 PP

         SPX 148 sssssspsllrrlfsesesreeksersyetrplr....aekeFferLds 192
                 ++ + ++++   l+ +s++ + ++ ++ +++  +     +++Ff++Ld+
  CDO70437.1 140 PPPPIRRETRPDLLASSSKIQHSAADVDRIDWANlspaDKRAFFSWLDE 188
                 55555555555555566666666666666644447788999******97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.089
         SPX 100 lsrssrssssygglvssppsans 122
                  s+      s g+++s pp++++
  CDO70437.1 228 PSHPPT---SDGSITSYPPHPEH 247
                 111111...22222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3387.06
//
Query:       CDO70438.1  [L=327]
Description: hypothetical protein BN946_scf184999.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 2050.26
//
Query:       CDO70439.1  [L=682]
Description: hypothetical protein BN946_scf184999.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-65  218.2   0.0    6.2e-65  217.3   0.0    1.5  1  Pan3_PK   Pan3 Pseudokinase domain
    0.00013   21.4   0.0    0.00024   20.6   0.0    1.3  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pan3_PK  Pan3 Pseudokinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.3   0.0   6.9e-69   6.2e-65       2     138 .]     543     679 ..     542     679 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.3 bits;  conditional E-value: 6.9e-69
     Pan3_PK   2 eellkaiaerlleeldsaleesdlleselskelengrlvrlllklgfinerpefekdkkwsetgdryllkLFrdyvFhqvdeegkpvldlahvlscLnk 100
                  +l+++i++rll+eld+a+++ d le el++elengrlvrll+k+gfinerpe+++d++wsetgdry++kLFrdyvFhqvde g+pv++l+hvl+cLnk
  CDO70439.1 543 GQLFDMIGSRLLTELDEAQNAVDRLEGELMSELENGRLVRLLCKFGFINERPEHSHDTRWSETGDRYIVKLFRDYVFHQVDELGRPVVNLTHVLTCLNK 641
                 6899*********************************************************************************************** PP

     Pan3_PK 101 lDagveekilLvsrdeqsvlvvsYkelkkllesafeeL 138
                 lDag++e+++L+srdeqs+lvvsY+e+k ++esaf eL
  CDO70439.1 642 LDAGSDERVMLISRDEQSCLVVSYREVKACIESAFGEL 679
                 ***********************************998 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.7e-08   0.00024      12     145 ..     319     470 ..     314     480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-08
                 SEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEB..HHHHHH.............H CS
     Pkinase  12 fGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee....kdelylvleyvegge..ladlle.............r 91 
                 +++ y+av++++g ++++ ++++ +  +    ++l+ i+   +l+hpniv + e+f++    +++l++v +  ++ +  ++ +++              
  CDO70439.1 319 YSTLYRAVNSNDGVTYVLRRVENFRLMQ---PAALTTIEAWSRLRHPNIVSVHEAFTSrafnDSSLVVVYDDHPNAQtlYEAHIKakppqfqggrlqaV 414
                 6889999999999999999988765554...579***********************999885666666555544444434444467777777766543 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE.EEE-SGTTS CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge.lKitDFGla 145
                 +  +se+++ +++ qi+++++ +H++g+  r +    iL+  ++++ ++++  G++
  CDO70439.1 415 SNRVSERTLWSYIIQIANAIRAVHEAGLAVRLIDVTKILVTgKNRHvVRLGSCGIV 470
                 4459999********************99999999999998655446777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4519.79
//
Query:       CDO70440.1  [L=264]
Description: hypothetical protein BN946_scf184999.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-21   76.2   0.1    3.5e-21   74.7   0.1    1.9  1  TFA2_Winged_2  TFA2 Winged helix domain 2
    3.2e-14   53.0   0.8    1.9e-13   50.5   0.2    2.3  2  TFIIE_beta     TFIIE beta subunit core domain


Domain annotation for each model (and alignments):
>> TFA2_Winged_2  TFA2 Winged helix domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1   3.9e-25   3.5e-21       1      61 []     109     170 ..     109     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 3.9e-25
  TFA2_Winged_2   1 rnkeeLlalLkkrp.kaeGikvkdLkdswpdveealeeLeaegeilvlrtkkdgqpkiVfwN 61 
                    rnk+ Ll  +++++ k +G++v++Lk+sw+ + +a+eeLe+ege++v+rt kdgq+++VfwN
     CDO70440.1 109 RNKAALLTEIQRQTrKGSGLSVRTLKESWKEAPQAIEELEKEGEVYVTRTLKDGQMRMVFWN 170
                    8*************88*********************************************9 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.2   2.2e-17   1.9e-13       2      68 .]      45     108 ..      44     108 .. 0.95
   2 ?   -0.1   0.0      0.13   1.2e+03      12      29 ..     133     152 ..     128     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.2e-17
  TFIIE_beta   2 ftqLakiveylKkkdgplsleeIlsylslqldlsdknwllleaLknnpkieyDpkkgkfsfkPlyni 68 
                 +tqL++ v++lK +++p++l++++  +++  ++ d+++ lle ++ ++++  Dpk++ +s+++ +n+
  CDO70440.1  45 NTQLVYLVNHLKHNGNPMRLQDLAILTNT--PV-DTDRVLLEKFRAHDRVVHDPKTDLYSYRHDFNV 108
                 8***************************9..77.5578****************************8 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.13
  TFIIE_beta  12 lKk..kdgplsleeIlsyls 29 
                 lK+  k++p  +ee++++  
  CDO70440.1 133 LKEswKEAPQAIEELEKEGE 152
                 88888999******998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1938.21
//
Query:       CDO70441.1  [L=156]
Description: hypothetical protein BN946_scf184999.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-24   84.1   0.0    8.2e-24   83.7   0.0    1.2  1  HSP20       Hsp20/alpha crystallin family
    7.6e-11   41.4   0.0    1.2e-10   40.8   0.0    1.3  1  ArsA_HSP20  HSP20-like domain found in ArsA
  ------ inclusion threshold ------
      0.012   16.7   0.0      0.015   16.3   0.0    1.2  1  CS          CS domain


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   1.4e-27   8.2e-24       6     102 .]      60     156 .]      53     156 .] 0.91

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.4e-27
                 EEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--....---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..--------- CS
       HSP20   6 eeefevkldvpglkkeelkvkvednrvlvkgehe..eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkkerkiqiq 102
                 ++  + ++++pgl ke+++++v+dn+++v+ge +  +e++++ + ++er+ +kFsr++ LP++++++++kas+++GvLtvt p+++pe    +++i iq
  CDO70441.1  60 KNLVTATFELPGLTKENVQIDVKDNVLTVSGESTltSERDEKGYTVRERRFGKFSRSLPLPQGIKPEEIKASMNNGVLTVTFPRTTPEL--APKRITIQ 156
                 56667799***************************777777778899****************************************94..68888886 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     2e-14   1.2e-10       8      63 .]      67     141 ..      62     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 2e-14
  ArsA_HSP20   8 ldLPfvdkeeidlsrsgdeLtIkig....................nfrRqitLPsvlarkevtsAkfedgvLeIrF 63 
                  +LP+++ke++++  +++ Lt++ +                    +f+R+ +LP+ ++ +e+ +A++++gvL+++F
  CDO70441.1  67 FELPGLTKENVQIDVKDNVLTVSGEstltserdekgytvrerrfgKFSRSLPLPQGIKPEEI-KASMNNGVLTVTF 141
                 68************************************************************.************9 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.3   0.0   2.5e-06     0.015       9      73 ..      60     140 ..      50     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                 TTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECE.....................BSS-BETTTEEEEEETTEEEEE CS
          CS   9 ldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliege.....................LfgpIdpeesswtieskkveit 73 
                 ++ V+ t++++++  +k++v+++ k + l+v+  + +l+   e                     L + I+pee + ++ +  + +t
  CDO70441.1  60 KNLVTATFELPGL--TKENVQIDVKDNVLTVSG-ESTLTS--ErdekgytvrerrfgkfsrslpLPQGIKPEEIKASMNNGVLTVT 140
                 577999******9..*****************7.333333..335899***************************99988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1073.64
//
Query:       CDO70442.1  [L=231]
Description: hypothetical protein BN946_scf184999.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-45  154.6   0.1    6.4e-45  154.5   0.1    1.0  1  Amidohydro_3  Amidohydrolase family
      7e-08   32.2   0.0    6.1e-07   29.1   0.0    1.9  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.1   7.2e-49   6.4e-45     260     473 .]       3     228 ..       1     228 [. 0.92

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 7.2e-49
  Amidohydro_3 260 fedealaelvaaadergldvaihaigdaavddvldafeaa.aekngnqdrr.rlehaegvtesqiervaalqvaagvqpvfnf.edelldsrlgper 353
                   +++eal+elv++  ++g+ v +haigd a  +vldafe+  + +  + drr r+eha++++ +++er  +l+v  +vqp ++  ++++++ rlgper
    CDO70442.1   3 LPEEALNELVREWWDKGWSVNVHAIGDRANKAVLDAFEQIaHSAGDVADRRpRIEHAQIMRREDLERSGKLGVLTSVQPTHATsDMWYAETRLGPER 99 
                   57889***********************************66666777777********************************************** PP

  Amidohydro_3 354 argstpvkell...nagvkvalgsDapvgpfdpwprigaavmrktrrgg.....evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADl 442
                    rg ++ ++ll   ++g  ++lgsD pv+ ++p+ +++aav r    g+     +   p+e+l++ +al+ +T ++A+a ++ed+ G+Le+G++AD+
    CDO70442.1 100 IRGAYAYQTLLqssRNG-VLPLGSDFPVEGINPLLGFYAAVARLDTDGKsprgeDGWFPSERLTRAQALKGMTLDAAYASFAEDTLGSLEPGKRADF 195
                   ****9999998442345.66*********************99886666999999999*************************************** PP

  Amidohydro_3 443 vvldadpld..vdppelaearvrltvvdGrvvy 473
                   v+ld++++d  ++ +e+ ea++++tv+dG+vv+
    CDO70442.1 196 VILDRNIMDesRPFSEILEAKAKATVIDGKVVF 228
                   ****999874477789***************97 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.022     2e+02     130     167 ..       4      40 ..       2      86 .. 0.76
   2 !   29.1   0.0   6.8e-11   6.1e-07     280     344 .]     161     227 ..     150     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.022
                   HHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHT CS
  Amidohydro_1 130 sdeelkealkeakkrdlpvaiHaletkgevedaeaafg 167
                   ++e+l e+++e  +++  v +Ha ++++ + ++++af 
    CDO70442.1   4 PEEALNELVREWWDKGWSVNVHAIGDRANK-AVLDAFE 40 
                   5788999999999999*******8877776.5555554 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 6.8e-11
                   CHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCT...CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 280 lslkealrmaTingAkalglddkvGsievGkdADlvvvdldi...laafvglkkdgnvkkvivkGklv 344
                   l+ ++al+ +T+++A a   +d++Gs+e+Gk+AD+v++d +i     +f ++ +  + k ++++Gk+v
    CDO70442.1 161 LTRAQALKGMTLDAAYASFAEDTLGSLEPGKRADFVILDRNImdeSRPFSEILE-AKAKATVIDGKVV 227
                   56689**********999999*******************55554889999988.6699******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1613.64
//
Query:       CDO70443.1  [L=353]
Description: hypothetical protein BN946_scf184999.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-24   85.4   0.3    7.7e-24   85.0   0.3    1.1  1  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.3   4.3e-28   7.7e-24      10     208 ..     151     343 ..     147     351 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 4.3e-28
  Amidohydro_3  10 vlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltavrdqagtt..pkgrwivgeGwdeaqfaeerfpyalaeldevledapvllaaldtHaav 103
                    +PG++D+H+H+  +g  + + lrl++  ++sl ++l+ ++d++  +    ++wi + Gwd+++++++ +  ++  l       p+ l ++d Ha +
    CDO70443.1 151 IIPGLTDAHAHIVQYG--FkMQLRLDQ--AQSLSEILDLLEDHVRSHppSTDTWIEAMGWDQTRWSDNDDLASRPSLASL----PIALHRVDVHALW 239
                   69**********9999..888899999..9*****************877899**667**********************....************* PP

  Amidohydro_3 104 rnsaaldl..agiteatpdp.aggeilrdangegatgllregafhlvldla..pl.areaeaaavaaalaalasyGitsveagggnvsslddleplf 194
                   ++ +a +l  a ++ + p+  +ggei+rd  + ++tg+  +     ++ l+  p+ +  ++++++a+ ++++ + G+ts+   ++  +sl+++e+++
    CDO70443.1 240 LSPRAVALtkAHLNGTFPASvPGGEIVRDPATGEPTGIFVDA----AMSLVpiPSwSASQMRDYAAQTVKDALAVGLTSI---HDAATSLAEFELFQ 329
                   **998887546777666777*********99999*****966....4555699999************************...************** PP

  Amidohydro_3 195 eltaeeklplrvii 208
                   ++++e+klp+rv  
    CDO70443.1 330 QMDEENKLPIRVYA 343
                   ************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2415.03
//
Query:       CDO70444.1  [L=716]
Description: hypothetical protein BN946_scf184999.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-09   37.0   0.0      0.042   14.0   0.0    4.9  5  PPR_2     PPR repeat family
      5e-05   22.8   0.1       0.42    9.9   0.0    3.1  4  PPR_long  Pentacotripeptide-repeat region of PRORP
    8.2e-05   22.6   2.5         15    6.1   0.3    6.2  5  PPR       PPR repeat
  ------ inclusion threshold ------
      0.023   15.3   0.0       0.07   13.7   0.0    1.8  1  Striatin  Striatin family
      0.029   14.4   0.0         50    4.1   0.0    3.5  3  PPR_3     Pentatricopeptide repeat domain
       0.18   11.6   0.0        7.8    6.3   0.0    3.1  3  PPR_1     PPR repeat
        5.5    8.6  10.5        4.2    9.0   3.3    2.9  2  DUF3729   Protein of unknown function (DUF3729)


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.8   9.9e+03      21      42 ..     237     258 ..     227     270 .. 0.55
   2 !   14.0   0.0   1.6e-05     0.042      20      49 ..     346     376 ..     326     377 .. 0.74
   3 !   11.1   0.0   0.00014      0.35      21      50 .]     386     416 ..     382     416 .. 0.91
   4 ?    4.8   0.0     0.013        33      18      47 ..     422     459 ..     418     461 .. 0.74
   5 ?   -1.3   0.0         1   2.7e+03       7      41 ..     616     651 ..     615     652 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.8
       PPR_2  21 eAfklfneMkkrglePnsyTys 42 
                  A ++ + M++ g +  + T +
  CDO70444.1 237 AAESIIELMQRFGAPVPEETLN 258
                 5666666666655544444433 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
       PPR_2  20 eeAfklfneMkkrgl.ePnsyTysilikglc 49 
                  +A++lf  M+     +P+++ y+++i++++
  CDO70444.1 346 AQAWDLFAHMRYVAHpTPDPFLYTVMIDACA 376
                 479*********6555*************97 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00014
       PPR_2  21 eAfklfneMkk.rglePnsyTysilikglck 50 
                  A++l+ eM   + ++ ++ Tys +i ++++
  CDO70444.1 386 RALDLWTEMTMdKRIPATAATYSAVIYACAR 416
                 79********989***************986 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.013
       PPR_2  18 kveeAfklfneMkkrgl........ePnsyTysilikg 47 
                  v+eAf+l +eM +           +P+ +T++ l+ g
  CDO70444.1 422 YVNEAFRLAKEMLDGHRdaygntafPPDRKTFCALLEG 459
                 58899999999987544456666668999999998877 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1
       PPR_2   7 NtlIsglckkgkveeAfklfneMkkr.glePnsyTy 41 
                 N+++s ++++  +ee  +l+    ++ g+e n+ +y
  CDO70444.1 616 NAYLSVHYTHASLEEGARLYRVLFSQlGVEKNAWSY 651
                 999999***999999999998766644666666665 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00035       0.9      92     122 ..     221     251 ..     171     274 .. 0.79
   2 ?   -2.0   0.0      0.75   1.9e+03      28      84 ..     308     358 ..     290     380 .. 0.58
   3 !    9.9   0.0   0.00016      0.42      27      83 ..     384     435 ..     363     483 .. 0.54
   4 ?   -3.2   0.0       1.7   4.3e+03      41      80 ..     643     680 ..     632     690 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-S- CS
    PPR_long  92 tvtalarlaaakedgdlafelvkemekagvs 122
                   +al r+++ ++dg  a+++++ m++ g  
  CDO70444.1 221 QWSALTRVCVRAQDGAAAESIIELMQRFGAP 251
                 579**********************998765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHSSS---HHHHHHHHH.HHHHC.HCSTTTHHHHHHHHHHHHHHHHHT CS
    PPR_long  28 aaAlelydkavaegvrlaqyhynvlly.lcskaeaaseskknkalargfevfeamkak 84 
                 +aAl +  +  + g+   q +y  ++  l+s+ +a        a a+++  f++m+  
  CDO70444.1 308 TAALTVLHAYEERGLPAPQRSYTRVIRsLLSNRTAM-------AEAQAWDLFAHMRYV 358
                 566666666666667777777766664144433222.......234567777777663 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHSS.S---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHH CS
    PPR_long  27 aaaAlelydkavaeg.vrlaqyhynvllylcskaeaaseskknkalargfevfeamka 83 
                  a+Al+l+ ++  ++ +  ++ +y++++y c+++ +++       ++++f+  ++m  
  CDO70444.1 384 PARALDLWTEMTMDKrIPATAATYSAVIYACARSGQKAY------VNEAFRLAKEMLD 435
                 456677776666533367777777777777766644332......3344444444433 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.7
                 SS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHH CS
    PPR_long  41 gvrlaqyhynvllylcskaeaaseskknkalargfevfea 80 
                 gv+ ++ +y   l  c +a++ +e   ++al+ ++ev+e+
  CDO70444.1 643 GVEKNAWSYVDALERCGRARRGEER--KQALQFAREVWEE 680
                 4666777888888889888776553..3588888888876 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0088        22       3      30 ..     222     249 ..     222     249 .. 0.96
   2 ?    3.4   0.0     0.043   1.1e+02       2      12 ..     367     377 ..     366     378 .. 0.87
   3 ?   -2.0   0.0       2.2   5.7e+03      18      27 ..     386     395 ..     383     397 .. 0.83
   4 !    6.1   0.3     0.006        15       2      15 ..     406     419 ..     405     435 .. 0.79
   5 ?    0.4   0.0       0.4     1e+03       2      28 ..     452     478 ..     451     480 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0088
         PPR   3 ynslIsgycknGkleeAlelfkeMkekG 30 
                 +++l ++++++ +   A+++++ M++ G
  CDO70444.1 222 WSALTRVCVRAQDGAAAESIIELMQRFG 249
                 9999*********************988 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.043
         PPR   2 tynslIsgyck 12 
                  y+++I+++++
  CDO70444.1 367 LYTVMIDACAS 377
                 6********85 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.2
         PPR  18 eAlelfkeMk 27 
                  Al+l+ eM 
  CDO70444.1 386 RALDLWTEMT 395
                 69*******6 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.006
         PPR   2 tynslIsgycknGk 15 
                 ty+++I +++++G+
  CDO70444.1 406 TYSAVIYACARSGQ 419
                 9************7 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.4
         PPR   2 tynslIsgycknGkleeAlelfkeMke 28 
                 t+ +l+ g  + G+l ++ +++ e+++
  CDO70444.1 452 TFCALLEGAKRVGDLAKVRWILAEIIS 478
                 8999****************9999876 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.7e-05      0.07      88     148 ..     525     582 ..     503     586 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
    Striatin  88 eeeeaeeeekseeeskskekksakeslkkseaeeesesekrdeksrkksrqlLkqclqEit 148
                 +   ++e++++++ + s+++++a+   ++s++++++++ ++ +++ +k r+lL ++lqE++
  CDO70444.1 525 KVAASAEDSDAASAEDSDAAAAAP---SPSAETQDQQPASEPPATAEKARTLLYKILQEVA 582
                 333333333333333333333333...334568899999********************96 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.059   1.5e+02      18      43 ..     222     247 ..     217     251 .. 0.88
   2 ?    3.0   0.0     0.043   1.1e+02      16      43 ..     405     432 ..     393     433 .. 0.85
   3 ?    4.1   0.0      0.02        50      13      41 ..     448     476 ..     442     480 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.059
       PPR_3  18 YthLLtayanagnkklalevlermkk 43 
                 + +L +++++a++  +a+ ++e m+ 
  CDO70444.1 222 WSALTRVCVRAQDGAAAESIIELMQR 247
                 67899*******************75 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.043
       PPR_3  16 vtYthLLtayanagnkklalevlermkk 43 
                  tY + + a+a+ g k  ++e +   k+
  CDO70444.1 405 ATYSAVIYACARSGQKAYVNEAFRLAKE 432
                 6999***********9999999987776 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.02
       PPR_3  13 ldvvtYthLLtayanagnkklalevlerm 41 
                 +d  t+ +LL++++++g++  +  +l+++
  CDO70444.1 448 PDRKTFCALLEGAKRVGDLAKVRWILAEI 476
                 66779**************9999888875 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.1   2.6e+02       4      16 ..     362     374 ..     360     377 .. 0.89
   2 ?    6.3   0.0     0.003       7.8       6      33 ..     403     433 ..     398     434 .. 0.83
   3 ?   -3.9   0.0       4.7   1.2e+04       5      16 ..     448     459 ..     447     466 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
                 ---HHHHHHHHHH CS
       PPR_1   4 kPdvvTYNtLIdG 16 
                  Pd + Y+ +Id+
  CDO70444.1 362 TPDPFLYTVMIDA 374
                 69*********98 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.003
                 -HHHHHHHHHHHHHTS-...HHHHHHHHHHH CS
       PPR_1   6 dvvTYNtLIdGlCkaGr...vdeAfelfdeM 33 
                 ++ TY+ +I ++ + G    v+eAf+l +eM
  CDO70444.1 403 TAATYSAVIYACARSGQkayVNEAFRLAKEM 433
                 66799999999999995555********999 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 4.7
                 --HHHHHHHHHH CS
       PPR_1   5 PdvvTYNtLIdG 16 
                 Pd  T+  L+ G
  CDO70444.1 448 PDRKTFCALLEG 459
                 899999999887 PP

>> DUF3729  Protein of unknown function (DUF3729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.7      0.13   3.5e+02      30      96 ..     148     216 ..     140     223 .. 0.75
   2 ?    9.0   3.3    0.0016       4.2      55     110 ..     521     575 ..     501     577 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.13
     DUF3729  30 Sppeaaaiaeappvglprp..vstppsasdvlvlpppseeaalesdlvpsvakpasppsplapkapark 96 
                 S pe +  ++a++ ++  +   +   sas   +  ++ + a+++    +sv + a+p+s+  p++p++ 
  CDO70444.1 148 SNPELLERQDARTLDAIVHdlYQHEDSASISSDARSQYNAAITKLREIASVLEAARPSSSRSPPPPVSV 216
                 777777777777777766655445555666667777778888888999999999999999999999975 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0016
     DUF3729  55 asdvlvlpppseeaalesdlvpsvakpasppsplapkaparkvpappparrrrLLh 110
                 +++  v ++++++ a++++  + +a+  sp+++++ ++pa+++pa + ++ r LL+
  CDO70444.1 521 VEEPKVAASAEDSDAASAEDSDAAAAAPSPSAETQDQQPASEPPATA-EKARTLLY 575
                 344455666777777777777777777889999*************8.99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4887.20
//
Query:       CDO70445.1  [L=547]
Description: hypothetical protein BN946_scf184999.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-07   31.5   0.4    1.1e-06   28.6   0.1    2.1  2  Bromo_TP       Bromodomain associated
  ------ inclusion threshold ------
       0.23   11.6   0.0       0.31   11.2   0.0    1.2  1  Bromo_TP_like  Histone-fold protein


Domain annotation for each model (and alignments):
>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   1.2e-10   1.1e-06       5      77 .]       8      80 ..       4      80 .. 0.91
   2 ?    0.9   0.0     0.053   4.7e+02      37      57 ..      82     102 ..      81     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.2e-10
                HHHHHHHHHHHHHHHT-SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHTT--GGG CS
    Bromo_TP  5 rsllkvvvsqileeaGfdsaeesaLEtLteiaqkYirelgeqaksfaehagRseptlkDvvltLqelginvge 77
                ++ l+ v  ++l +  f+++   a   Lt+++ +Y++ ++ +  ++a hagR+  ++ D+v +++elg +v+e
  CDO70445.1  8 KKILESVTVKTLHAHNFSRSSTQANQVLTDLLSRYLLLFSSTCAKYAHHAGRLRLSVHDAVHAMDELGTSVDE 80
                56667777788899999999999999********************************************986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.053
                 HHHHHHHHHHHHHHHTTSS-S CS
    Bromo_TP  37 qkYirelgeqaksfaehagRs 57 
                 ++Y++  +++++++a h ++ 
  CDO70445.1  82 KEYCSTEAKEMSRYAVHSAKR 102
                 68*************555543 PP

>> Bromo_TP_like  Histone-fold protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.31       1      44 [.       9      52 ..       9     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
  Bromo_TP_like  1 KilklvivEillQvGferiseqslniltdllkyyiekillkikk 44
                   Kil+ v v  l    f r s q+ ++ltdll  y+   +   +k
     CDO70445.1  9 KILESVTVKTLHAHNFSRSSTQANQVLTDLLSRYLLLFSSTCAK 52
                   89*****************************9998666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4093.39
//
Query:       CDO70446.1  [L=441]
Description: hypothetical protein BN946_scf184999.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-15   55.4   0.0    1.2e-14   54.7   0.0    1.4  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   6.9e-19   1.2e-14       1     142 [.     244     377 ..     244     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 6.9e-19
                      EEEE--TT--HHHHHHHHHHHHHSSES............EEEEEESSTHCSST-.SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTT CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed............livgvpsdeppkkkk.kplasaeeRlemlelakevdevisvdpweltrevlkklk 81 
                      +a+G++D++H+GH+ +l+qak  ++              l+vgv+sde+  + k  +++s +eR     ++++ devi+++pw+++  +++k++
       CDO70446.1 244 YADGVYDLFHFGHALQLRQAKLSFSAPpgapphivsgvhLLVGVNSDEQCAQHKnITIMSHAER-----HCRWIDEVIPDAPWVIDAAFIEKHQ 332
                      79***********************999999999999999********9988855888888887.....99*********************** PP

                      TTEEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  82 pdklylvigadvledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      +d  y+++++d++++       +++++ vk  ++          ++++ rt+g+S++++ e
       CDO70446.1 333 ID--YVAHDEDPYASS----GHDDVYAFVKNQGK----------FLPTRRTPGVSTSDLLE 377
                      **..**********98....**************..........*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 2480.15
//
Query:       CDO70447.1  [L=480]
Description: hypothetical protein BN946_scf184999.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-64  216.7   0.0    3.4e-63  213.1   0.0    2.1  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   0.0   1.9e-67   3.4e-63       1     218 [.       1     290 [.       1     291 [. 0.87

  Alignments for each domain:
  == domain 1  score: 213.1 bits;  conditional E-value: 1.9e-67
        SRAP   1 MCgRyaltlapeelaeele.ae......eedkelrpsynvaptqkvpvvva................................................ 44 
                 MCgRy+l l ++e+ ++l+  +        ++++ p++n+ap++++pv+++                                                
  CDO70447.1   1 MCGRYSLGLPHDEIVQQLHgYNvhvgewVGRDNFVPRHNIAPRSQAPVIRRrdphepaagpsrsnetapsvagtaaaptsesfapsdsaenvaasqset 99 
                 ****************888522445555344449***************99899999999999999999999999999999999999888888877777 PP

        SRAP  45 .....eeeeeeeeee...............erklqamkwGlvPswakdpkklglktiNaRsetlae..kplfrsalkkkRcvvpadGFYEWkkkgkekq 121
                      +        +                  l++mkwGlvP+++k++ + +lktiNaR e l e   ++++s++ +kRc v+++G+YEW kkgke+ 
  CDO70447.1 100 astsnH--------SqseaqaqthphnvssPIILHTMKWGLVPHYSKHE-DPSLKTINARCEALIEgqAGMWASIKGRKRCAVVCEGYYEWLKKGKERL 189
                 666541........03334445677788889999************998.778************97679*********************889***** PP

        SRAP 122 PyfikrkdgkllalAGLydvweeegeeeklytytiiTteankqlaelHdRmPviL.eeeelraWLdp.rkedskelqellkpaee..eelevypVskeV 216
                 P+f+++kdg+l++lAGL+d+   eg++e l+t+ti+Tt+a+k++++lHdR+PviL +e +l+ WLd+ + ++  el +l++p++   + l +y+V keV
  CDO70447.1 190 PHFTRHKDGRLMLLAGLWDCTVLEGSTERLWTFTIVTTDASKEFSWLHDRQPVILpDETALNVWLDTsSGRWMPELSKLCAPYRYsdHPLVCYQVPKEV 288
                 **********************99*9*****************************66799999****999**********999543379********** PP

        SRAP 217 nk 218
                 +k
  CDO70447.1 289 GK 290
                 98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3097.04
//
Query:       CDO70448.1  [L=933]
Description: hypothetical protein BN946_scf184999.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-08   32.0   0.0    1.1e-07   31.3   0.0    1.3  1  CUE       CUE domain


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   6.4e-12   1.1e-07       3      41 ..      23      61 ..      21      62 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 6.4e-12
                HHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE  3 qmletLkemFPdldeevIravLrasngnvEatinaLLeg 41
                +++++Lke+FP +++ +++  L + ng++E++  ++ eg
  CDO70448.1 23 SQVKQLKEAFPTWSDFDLESLLVEVNGDIEVASLRIIEG 61
                89******************************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.37s 00:00:01.49 Elapsed: 00:00:00.55
# Mc/sec: 5129.80
//
Query:       CDO70449.1  [L=811]
Description: hypothetical protein BN946_scf184999.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-26   91.4   0.0    6.7e-26   90.7   0.0    1.4  1  DSPc            Dual specificity phosphatase, catalytic domai
    5.6e-05   23.6   0.0    0.00028   21.4   0.0    2.2  2  Rhodanese       Rhodanese-like domain
  ------ inclusion threshold ------
      0.087   12.4   0.0       0.14   11.7   0.0    1.2  1  Y_phosphatase   Protein-tyrosine phosphatase
       0.16   11.9   0.0       0.28   11.1   0.0    1.3  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   1.5e-29   6.7e-26       2     133 .]     544     680 ..     543     680 .. 0.91

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 1.5e-29
                 EEEECCHHC..HHHHHHHTCSEEEEESSSSSEC..ECCTTTTSEEEEECCES.STTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHH CS
        DSPc   2 ylgskstas..lallsklgitlvinvtkevpna..nalkkseieklripved.ehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYl 95 
                 +lg + t++   + l  lg++ ++n++ e++      l +   +++rip++d  +e++i++  +e+ e++d+a+      +VHC+aG sRS t ++aYl
  CDO70449.1 544 FLGPELTSEehVDELLSLGVKRILNIAAECDDDhgLRLRERFERYIRIPMRDtVEEDNITRGVREVCEILDDARLHSSPTYVHCKAGKSRSVTAVMAYL 642
                 6666666665567888999***********9888856688999*********77999****************************************** PP

                 HHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHHHH CS
        DSPc  96 mktknlslneayeflkerrpaispnagfirqLleyekk 133
                 +  ++++l+ ay f+ err+ ispn+gf+++L+ +e++
  CDO70449.1 643 IHANHWTLSRAYAFVLERRKGISPNIGFVSELMTFEEQ 680
                 ***********************************975 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.2e-08   0.00028       7     103 ..     186     310 ..     180     314 .. 0.65
   2 ?   -1.7   0.0      0.91   4.1e+03      65      85 ..     619     638 ..     594     654 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.2e-08
   Rhodanese   7 ell.ekgkvallDvRppeeYekghIpgAvnv.........skdtlsrakkseapllelpeellel........gidnkktvvvycdgggr.aaaa.... 82 
                 ++l +  +++l+D+Rp ++Y + h++++vn+         ++++ +++  + a l ++++  + +          d +  v+v++++ +   ++     
  CDO70449.1 186 ARLsSPTRPILIDTRPTQAYLAAHLEHSVNIptipslilkRSKKPGGGLHDIAALRQWITTEEGKhawddmmhSGDWDGDVIVFDENMDEqDTNNpqat 284
                 4551334455***********************97766654444444444444444444444444777777777788999*****99999444445433 PP

   Rhodanese  83 aallk......k..lGyknvsvldGGfka 103
                 a          +  l + +v +l GGf+a
  CDO70449.1 285 A---WillnllEpvLEHGTVDYLHGGFSA 310
                 2...23444541556644699*****987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.91
   Rhodanese  65 nkktvvvycdgggraaaaaal 85 
                 + ++ +v+c+ g++ ++++a 
  CDO70449.1 619 HSSPTYVHCKAGKS-RSVTAV 638
                 678999***99998.444333 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.1e-05      0.14     158     193 ..     612     643 ..     595     652 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
                    HHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHH CS
  Y_phosphatase 158 lirkvekskeaksgpvvVhCsaGvgRtgtfvaldil 193
                    ++++++     +s+p+ VhC+aG +R+ t v++ ++
     CDO70449.1 612 ILDDAR----LHSSPTYVHCKAGKSRSVTAVMAYLI 643
                    333333....566**************999887654 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.3e-05      0.28     101     140 ..     595     642 ..     547     654 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.3e-05
  Y_phosphatase3 101 elle..sakkayrkvfealadee....pvlfHCtaGKDR..TGvlaal 140
                     + +e  + ++ +r+v e l d++    p+ +HC aGK R  T v+a+l
      CDO70449.1 595 DTVEedNITRGVREVCEILDDARlhssPTYVHCKAGKSRsvTAVMAYL 642
                     333355556778888888877445679************444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 4942.09
//
Query:       CDO70450.1  [L=126]
Description: hypothetical protein BN946_scf184999.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-19   67.0   0.0    1.1e-18   66.6   0.0    1.1  1  LSM         LSM domain
  ------ inclusion threshold ------
       0.11   12.7   0.1       0.22   11.7   0.1    1.4  1  DUF150_C    RimP C-terminal SH3 domain
       0.13   12.2   0.0       0.21   11.6   0.0    1.4  1  PheRS_DBD2  PheRS DNA binding domain 2


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   1.9e-22   1.1e-18       2      67 .]      42     111 ..      41     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.9e-22
                 HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET....EEEEEEEEEEEGGGEEEEEE CS
         LSM   2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk....ekrklglvliRGnnivlisl 67 
                 +l+k++n++++v++++gre+ G+Lkg+Dq +NlvL++v+e l+       ++r+lglv++RG +i+l+s+
  CDO70450.1  42 DLAKYVNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVQENLQAVPegqpTTRNLGLVVLRGPTITLLSP 111
                 699*************************************998877999*****************9986 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.7e-05      0.22       6      48 ..      42      81 ..      41      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
    DUF150_C  6 dFarflGelVkvklklpvegrkkftGkivevdeet.itlevdgk 48
                d a++++e ++vk+     g++++tG ++ +d+   ++l+ +++
  CDO70450.1 42 DLAKYVNERIRVKFT----GGREVTGVLKGYDQLLnLVLDEVQE 81
                67899**********....*************754577777766 PP

>> PheRS_DBD2  PheRS DNA binding domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.6e-05      0.21       1      15 [.      77      91 ..      77      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
  PheRS_DBD2  1 DeVqekLkliqeGka 15
                DeVqe+L+++ eG+ 
  CDO70450.1 77 DEVQENLQAVPEGQP 91
                9***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 884.73
//
Query:       CDO70451.1  [L=864]
Description: hypothetical protein BN946_scf184999.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-18   65.3  14.4     0.0014   18.7   0.1   10.8 12  HEAT       HEAT repeat
    1.3e-13   51.1  21.7      3e-08   34.0   0.0    9.0 11  HEAT_EZ    HEAT-like repeat
    1.3e-12   47.9  12.0     0.0033   17.8   0.4    7.6  7  HEAT_2     HEAT repeats
    7.5e-10   38.5  10.7     0.0018   18.3   0.1    7.3  7  Arm        Armadillo/beta-catenin-like repeat
    3.8e-09   36.3   0.1    1.5e-07   31.2   0.0    3.5  3  IBN_N      Importin-beta N-terminal domain
    0.00021   21.1   1.7        6.8    6.4   0.0    4.3  5  RIX1       rRNA processing/ribosome biogenesis
    0.00025   19.5   1.2        8.1    4.6   0.0    4.9  5  DRIM       Down-regulated in metastasis
    0.00073   18.2   3.5       0.42    9.1   1.5    3.2  2  Adaptin_N  Adaptin N terminal region
  ------ inclusion threshold ------
      0.011   14.9   3.9       0.29   10.2   0.1    3.6  3  MMS19_C    RNAPII transcription regulator C-terminal
      0.015   15.4   2.9        4.7    7.2   0.0    4.1  6  Cnd1       non-SMC mitotic condensation complex subunit 1
      0.029   14.2   0.1       0.53   10.0   0.0    2.9  3  TIP120     TATA-binding protein interacting (TIP20)
      0.073   13.1   0.0       0.31   11.0   0.0    2.1  1  FPL        Uncharacterised conserved protein
       0.11   12.3   3.6        8.6    6.2   0.1    4.5  5  DUF3385    Domain of unknown function (DUF3385)


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.3     6e+03      14      25 ..      51      62 ..      51      63 .. 0.86
   2 ?    1.5   0.0      0.35   4.8e+02      13      30 ..     143     160 ..     131     161 .. 0.85
   3 ?    3.5   0.0     0.079   1.1e+02      12      26 ..     188     202 ..     182     207 .. 0.89
   4 !    6.3   0.0    0.0098        14       1      29 [.     220     248 ..     220     250 .. 0.94
   5 !   11.7   0.1   0.00018      0.24       1      29 [.     324     359 ..     324     361 .. 0.91
   6 !   14.6   0.0   2.1e-05     0.029       1      29 [.     369     397 ..     369     398 .. 0.93
   7 !   18.7   0.1   9.8e-07    0.0014       2      29 ..     412     439 ..     411     441 .. 0.95
   8 ?    3.8   0.1     0.063        86      12      30 ..     464     482 ..     452     483 .. 0.81
   9 ?   -1.2   0.0       2.5   3.5e+03      16      30 ..     524     538 ..     520     539 .. 0.85
  10 ?   -2.9   0.0       8.9   1.2e+04       1      20 [.     646     665 ..     646     669 .. 0.66
  11 ?    2.5   0.0      0.17   2.3e+02       1      28 [.     688     717 ..     688     718 .. 0.86
  12 ?   -3.0   0.0        10   1.4e+04       4      12 ..     791     799 ..     789     818 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.3
                HHHHHHHHHHHH CS
        HEAT 14 peVReaAakaLg 25
                p+VR aA +aL 
  CDO70451.1 51 PHVRNAAGLALK 62
                78*****99986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.35
                 SHHHHHHHHHHHHHHHHC CS
        HEAT  13 speVReaAakaLgalaev 30 
                 s + R a+++a+g ++e 
  CDO70451.1 143 STNLRVATLQAIGFICEA 160
                 56789***********85 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.079
                 SSHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLga 26 
                 psp+V  aA++aL +
  CDO70451.1 188 PSPDVQLAAIQALYN 202
                 89**********976 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0098
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++ +++++ ++ps  V   A+++L+++++
  CDO70451.1 220 IMQVVCEATQSPSVPVQVGAFECLVKIMS 248
                 7999**********************997 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00018
                 HHHHHHHHHT-.......SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.......pspeVReaAakaLgalae 29 
                 ++P+ll ll++       ++++V +aAa +Lg la+
  CDO70451.1 324 IVPVLLDLLTHqdedadeDEWDVSKAAATCLGLLAQ 359
                 789999999999999999***************998 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++P++  +++ ++++ ReaA+ ++g ++ 
  CDO70451.1 369 VIPFIEANIRAQDWHLREAAVMTFGSILD 397
                 68***********************9975 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 9.8e-07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 lP+l+ ++ D++ +V +++a++Lg+++ 
  CDO70451.1 412 LPILIDMMADTNVNVKDTVAWTLGRICD 439
                 8**************************7 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.063
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                 ++p++ +++++aL +la +
  CDO70451.1 464 DNPRIAANCCWALMNLADQ 482
                 689999**********976 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHC CS
        HEAT  16 VReaAakaLgalaev 30 
                  R aA +a++ ++ +
  CDO70451.1 524 HRTAAYEAITSFVTH 538
                 69*******999865 PP

  == domain 10  score: -2.9 bits;  conditional E-value: 8.9
                 HHHHHHHHHT-SSHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaA 20 
                 +lP+l  +l+  +  + +++
  CDO70451.1 646 FLPHLYPALKAHEDTQLCMV 665
                 69999999976665555444 PP

  == domain 11  score: 2.5 bits;  conditional E-value: 0.17
                 HHHHHHHHH.T-.SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sD.pspeVReaAakaLgala 28 
                 ++++ll++l sD  + +V  + + ++g++a
  CDO70451.1 688 FMNVLLENLqSDvLNRNVKISILSCFGDIA 717
                 68999****6777788899999****9997 PP

  == domain 12  score: -3.0 bits;  conditional E-value: 10
                 HHHHHHT-S CS
        HEAT   4 lllkllsDp 12 
                 l++++l D+
  CDO70451.1 791 LVQRCLADS 799
                 666666663 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   2.2e+03      40      52 ..      49      61 ..      21      63 .. 0.75
   2 ?    1.2   0.1       0.4   5.5e+02       3      29 ..      91     117 ..      89     124 .. 0.80
   3 ?   -1.1   0.0       2.1     3e+03      33      54 ..     135     156 ..     129     157 .. 0.71
   4 ?    1.1   0.0      0.44     6e+02       4      54 ..     147     202 ..     144     202 .. 0.58
   5 ?    4.6   0.7     0.036        50      26      54 ..     321     356 ..     316     357 .. 0.87
   6 ?   -0.1   0.1         1   1.4e+03       6      34 ..     349     370 ..     344     374 .. 0.51
   7 !   34.0   0.0   2.2e-11     3e-08       1      55 []     382     437 ..     382     437 .. 0.98
   8 !   14.0   0.0   4.1e-05     0.056      19      52 ..     448     476 ..     444     479 .. 0.91
   9 ?   -2.8   0.0       7.2     1e+04      19      39 ..     497     517 ..     494     532 .. 0.76
  10 ?    1.8   0.1      0.26   3.6e+02       8      37 ..     628     654 ..     621     669 .. 0.60
  11 ?   -1.3   0.1       2.4   3.3e+03      20      42 ..     779     801 ..     777     815 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
     HEAT_EZ 40 dsdeVRaaAagaL 52
                ++++VR aA  aL
  CDO70451.1 49 SPPHVRNAAGLAL 61
                7889999998888 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.4
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpei 29 
                 v+  A++aL++ ag  +   +++v++i
  CDO70451.1  91 VKQDALMALASTAGKVGTVAAQVVSAI 117
                 77889****999988888888888776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.1
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgn 54 
                 L+   + +s + R a++ a+g 
  CDO70451.1 135 LGFVSEQSSTNLRVATLQAIGF 156
                 4555567777889999999996 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.44
     HEAT_EZ   4 RraAawaLGr...laggepellqplvpeilpaLl..alLnddsdeVRaaAagaLgn 54 
                 R a + a+G    ++++ pe l+    eil a +  a+ + +s++V+ aA+ aL n
  CDO70451.1 147 RVATLQAIGFiceALQNKPEILSMRSNEILTAVIhgARKEEPSPDVQLAAIQALYN 202
                 55556666544445555566666666666666663222233666889999999865 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.036
     HEAT_EZ  26 vpeilpaLlalLnd.....dsd..eVRaaAagaLgn 54 
                  pei+p Ll lL++     d+d  +V +aAa +Lg 
  CDO70451.1 321 MPEIVPVLLDLLTHqdedaDEDewDVSKAAATCLGL 356
                 69************9998877789999999999985 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 1
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLl 34 
                 aAa +LG la       q ++++i+pa +
  CDO70451.1 349 AAATCLGLLA-------QAVQDVIVPAVI 370
                 6777776444.......333334444433 PP

  == domain 7  score: 34.0 bits;  conditional E-value: 2.2e-11
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 w +R+aA++++G+ l g  p  l plv ++lp L+ ++ d + +V+ ++a++Lg++
  CDO70451.1 382 WHLREAAVMTFGSiLDGPDPSVLTPLVNQALPILIDMMADTNVNVKDTVAWTLGRI 437
                 99****************************************************97 PP

  == domain 8  score: 14.0 bits;  conditional E-value: 4.1e-05
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 + +l+pl+++++  L      d++++ a++++aL
  CDO70451.1 448 DVHLHPLISALVSGLQ-----DNPRIAANCCWAL 476
                 6799************.....************9 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 7.2
     HEAT_EZ  19 pellqplvpeilpaLlalLnd 39 
                 p  l+p+ + ++ aLl+l ++
  CDO70451.1 497 PSPLAPYYEGVVQALLRLTET 517
                 777889999999999987654 PP

  == domain 10  score: 1.8 bits;  conditional E-value: 0.26
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalL 37 
                 + aL+   +   +  +p+++  lp L ++L
  CDO70451.1 628 VGALA---AALEQGFAPYISSFLPHLYPAL 654
                 33454...4445555555556666666665 PP

  == domain 11  score: -1.3 bits;  conditional E-value: 2.4
     HEAT_EZ  20 ellqplvpeilpaLlalLnddsd 42 
                 +ll p+vp +l +  ++L d++ 
  CDO70451.1 779 DLLLPHVPSMLELVQRCLADSER 801
                 57889999999999999998875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.8      0.26   3.5e+02      11      87 ..      12      99 ..       3     100 .. 0.56
   2 !   12.9   0.0     8e-05      0.11       3      55 ..     133     200 ..     131     246 .. 0.84
   3 !   17.8   0.4   2.4e-06    0.0033      26      86 ..     318     391 ..     314     393 .. 0.76
   4 !   14.8   0.2     2e-05     0.027      11      67 ..     341     407 ..     337     411 .. 0.73
   5 !    9.6   0.0   0.00086       1.2      31      59 ..     410     438 ..     406     448 .. 0.90
   6 ?    3.0   0.0     0.096   1.3e+02       6      58 ..     456     535 ..     451     553 .. 0.61
   7 ?    0.4   0.0      0.62   8.5e+02      33      74 ..     647     699 ..     626     722 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.26
      HEAT_2 11 dpdpevrraairaLgrignp...ealpaLve.lleded.pavRraaaeaLg......aigdpe..alpaLkellddddddvvReaAaeaL 87
                +pd  +r  a + L + + +    ++ +L + l++ ++ p+vR aa  aL       +i+++   a ++L+  ld+ +   v++ A+ aL
  CDO70451.1 12 SPDATTRDDATQKLESAAREnfpAYVMMLSNeLVNEASpPHVRNAAGLALKnslsarEIARQTdyANRWLA--LDEGTRNKVKQDALMAL 99
                57777777777777755443233777777774665544479999999999633333333333311444444..56666666666666665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8e-05
      HEAT_2   3 aLlqalendpdpevrraairaLg.............rignpealpaLvell..ededpavRraaaeaL 55 
                 +Ll ++++ +++++r a+++a+g             ++++ e+l a++  +  e ++p+v+ aa++aL
  CDO70451.1 133 TLLGFVSEQSSTNLRVATLQAIGficealqnkpeilSMRSNEILTAVIHGArkEEPSPDVQLAAIQAL 200
                 67778889999************99998777776666666699******99756689**********9 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 2.4e-06
      HEAT_2  26 rignpealpaLvell..eded.....pavRraaaeaLgaig....d...pealpaLkellddddddvvReaAaea 86 
                 +i+ pe++p L++ll  +ded     ++v +aaa+ Lg ++    d   p+++p+ ++  +  +d+  ReaA+ +
  CDO70451.1 318 KIAMPEIVPVLLDLLthQDEDadedeWDVSKAAATCLGLLAqavqDvivPAVIPFIEANIRA-QDWHLREAAVMT 391
                 68899**********7755444455678**********664333346669999**9999987.566669999976 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 2e-05
      HEAT_2  11 dpdpevrraairaLg.......rignpealpaLvellededpavRraaaeaLgai...gdpealpaL 67 
                   +++v +aa+ +Lg       +   p ++p +   ++ +d++ R+aa+++ g i    dp++l  L
  CDO70451.1 341 EDEWDVSKAAATCLGllaqavqDVIVPAVIPFIEANIRAQDWHLREAAVMTFGSIldgPDPSVLTPL 407
                 5679999********655333223334778888888899***********99988653357777666 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.00086
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaig 59 
                 +alp+L++++ d++ +v  ++a++Lg+i 
  CDO70451.1 410 QALPILIDMMADTNVNVKDTVAWTLGRIC 438
                 699***********************985 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.096
      HEAT_2   6 qalen..dpdpevrraairaLgrignp.......................ealpaLvell.eded.pavRraaaeaLgai 58 
                 +al++    +p ++++ ++aL +++++                        +++aL++l  ++++    R aa ea+  +
  CDO70451.1 456 SALVSglQDNPRIAANCCWALMNLADQlgyvegdepdtfnqpsplapyyeGVVQALLRLTeTTTSeGQHRTAAYEAITSF 535
                 44433334677777777777777766666666666666666666666666668888888853333146888888887765 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.62
      HEAT_2  33 lpaLvell.ededpavRraaaeaLgai....g......dpealpaLkellddd 74 
                 lp L ++l  +ed+   + a+  +g i    g      ++++ ++L+e l++d
  CDO70451.1 647 LPHLYPALkAHEDTQLCMVAVCIIGDIsralGdqtaqySSAFMNVLLENLQSD 699
                 44455555334555555555444443322222111222344445555555444 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.3   3.2e+03      24      38 ..     188     202 ..     186     202 .. 0.89
   2 !    6.8   0.0    0.0052       7.2      12      27 ..     323     338 ..     317     339 .. 0.88
   3 ?   -2.1   0.1       3.4   4.7e+03      28      40 ..     346     358 ..     345     358 .. 0.82
   4 !   18.3   0.1   1.3e-06    0.0018      10      41 .]     410     439 ..     401     439 .. 0.88
   5 !    8.8   0.4    0.0012       1.7      20      40 ..     457     480 ..     451     481 .. 0.77
   6 ?    1.4   0.0      0.26   3.6e+02      12      32 ..     506     527 ..     505     528 .. 0.75
   7 ?    2.2   0.0      0.15   2.1e+02      14      40 ..     647     674 ..     643     675 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.3
                 SSHHHHHHHHHHHHH CS
         Arm  24 edeevqeeAawALsN 38 
                 ++++vq +A  AL N
  CDO70451.1 188 PSPDVQLAAIQALYN 202
                 799******999988 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0052
                 THHHHHHHHTTTSSHH CS
         Arm  12 GavppLvrLLssedee 27 
                  +vp+L++LL+++de+
  CDO70451.1 323 EIVPVLLDLLTHQDED 338
                 58***********986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHHT CS
         Arm  28 vqeeAawALsNLa 40 
                 v ++Aa++L+ La
  CDO70451.1 346 VSKAAATCLGLLA 358
                 7799*****9775 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 1.3e-06
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +  a+p+L++++ +++++v+  +aw+L+ +++
  CDO70451.1 410 Q--ALPILIDMMADTNVNVKDTVAWTLGRICD 439
                 3..6**************************95 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0012
                 HTT...TSSHHHHHHHHHHHHHHT CS
         Arm  20 LLs...sedeevqeeAawALsNLa 40 
                  L     +++++  +++wAL NLa
  CDO70451.1 457 ALVsglQDNPRIAANCCWALMNLA 480
                 33347779**************98 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.26
                 THHHHHHHHTT.TSSHHHHHHH CS
         Arm  12 GavppLvrLLs.sedeevqeeA 32 
                 G+v++L+rL + +++e+  + A
  CDO70451.1 506 GVVQALLRLTEtTTSEGQHRTA 527
                 9********9976666655555 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.15
                 HHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLs.sedeevqeeAawALsNLa 40 
                 +p+L   L+ +ed++++ +A++ ++ ++
  CDO70451.1 647 LPHLYPALKaHEDTQLCMVAVCIIGDIS 674
                 899******************9998777 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.1e-10   1.5e-07       1      73 [.      21     100 ..      21     101 .. 0.93
   2 ?   -0.5   0.0      0.85   1.2e+03      22      43 ..     183     204 ..     170     206 .. 0.74
   3 ?   -1.0   0.0       1.2   1.7e+03      11      45 ..     504     538 ..     501     548 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHC..STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC.......GSXHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlek..qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq.......slpseekeqIrnnllnllg 73 
                 A+++L+ ++   +p ++  l++ l+n++s+++vR +A+l Lkn+++++  + +++        +l++ +++ +++ +l +l+
  CDO70451.1  21 ATQKLESAARenFPAYVMMLSNELVNEASPPHVRNAAGLALKNSLSAR--EIARQTdyanrwlALDEGTRNKVKQDALMALA 100
                 788999888888************************************..99999899*****************9998876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.85
                 HHCTTSHHHHHHHHHHHHHHHH CS
       IBN_N  22 lanseselevRqlAalyLknli 43 
                 + ++e ++ v+++A++ L n++
  CDO70451.1 183 ARKEEPSPDVQLAAIQALYNSL 204
                 555555679*********9987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
                 STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHH CS
       IBN_N  11 qpgflsallqilanseselevRqlAalyLknlitk 45 
                 ++g ++all++ ++++se + R +A   ++ ++t+
  CDO70451.1 504 YEGVVQALLRLTETTTSEGQHRTAAYEAITSFVTH 538
                 57899************999999997777776665 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.011        16      88     142 ..     131     181 ..     110     204 .. 0.74
   2 ?   -3.2   0.0       4.3   5.9e+03     133     157 ..     321     359 ..     317     367 .. 0.71
   3 ?    5.2   0.0     0.012        16      93     165 ..     394     468 ..     368     470 .. 0.93
   4 ?   -3.5   0.0       5.2   7.2e+03     167     182 ..     597     612 ..     582     625 .. 0.65
   5 !    6.4   0.0    0.0049       6.8      58     110 ..     659     712 ..     643     721 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
        RIX1  88 lrallsiLekpdppavlelaistlsriftltrgkptltREiltpnlpkfitallq 142
                 ++ ll +++++++  + +++++++ +i++ +++kp+    il+ +   ++ta++ 
  CDO70451.1 131 ITTLLGFVSEQSSTNLRVATLQAIGFICEALQNKPE----ILSMRSNEILTAVIH 181
                 4567777888899999999999*************6....555555555555555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.3
        RIX1 133 lpkfitallqlleee..............letvlealst 157
                 +p +++ ll+ll ++                t+l +l++
  CDO70451.1 321 MPEIVPVLLDLLTHQdedadedewdvskaAATCLGLLAQ 359
                 678888888888877777777777776666666666655 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.012
        RIX1  93 siLekpdppavlelaistlsriftltrgkptltREiltpnlpkfitallqlleee..letvlealstllplhPtt 165
                 siL  pdp +++ l  ++l  +++++++    +++ +  +l++++  l++ ++ +  l+  ++al + l+ +P +
  CDO70451.1 394 SILDGPDPSVLTPLVNQALPILIDMMADTNVNVKDTVAWTLGRICDLLVSTIQPDvhLHPLISALVSGLQDNPRI 468
                 79999************************************************7799999999999999999875 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 5.2
        RIX1 167 Rpfankirslllslla 182
                 +p+a++i +l+l+l++
  CDO70451.1 597 QPLADRIMTLILQLIN 612
                 4555555555555554 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0049
        RIX1  58 spegrwaGvcLakvtveesgeellssgstWlrallsiLekpdp.pavlelaist 110
                 + + + ++vc+++ + ++ g+  ++++s +++ ll +L++    + v+ + +s+
  CDO70451.1 659 DTQLCMVAVCIIGDISRALGDQTAQYSSAFMNVLLENLQSDVLnRNVKISILSC 712
                 5567899********************************994414444444445 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.092   1.3e+02     523     609 ..      65     178 ..      59     187 .. 0.65
   2 ?   -0.8   0.0      0.26   3.5e+02     336     424 ..     268     363 ..     265     368 .. 0.54
   3 ?    3.4   0.0     0.014        19     195     228 ..     582     615 ..     579     634 .. 0.89
   4 ?    3.5   0.0     0.012        17     379     460 ..     640     715 ..     632     737 .. 0.83
   5 !    4.6   0.0    0.0059       8.1     372     451 ..     775     849 ..     748     861 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.092
        DRIM 523 yskrrld.epDfdrRlsAFkkineek............................yksltleqwlpllhnclffirdeeelsirsnAsellkrfieaaas 592
                 +s r +  + D+  R  A  + +++k                            + +l   qw+ ++ ++l f+ +++   +r +  +++  ++ea+++
  CDO70451.1  65 LSAREIArQTDYANRWLALDEGTRNKvkqdalmalastagkvgtvaaqvvsaiaAVELPHGQWMNVITTLLGFVSEQSSTNLRVATLQAIGFICEALQN 163
                 55555555555555555555555553334445555555555555555555444345577789*****************************99999999 PP

        DRIM 593 kseeepskleleellkd 609
                 k+e  +  ++ +e+l+ 
  CDO70451.1 164 KPEILS--MRSNEILTA 178
                 887663..433344433 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.26
        DRIM 336 LsapkakesVvefvldivenllkladeeeeee..........edeeeigselLlphvsslLeylsalleksaas.kkdkskellereleiLsrlaplve 423
                 + +++  ++++ +++++ + + +l++e + e           e+e++  +   +  +++++  l +ll +++++ ++d + ++++++ + L  la+ v+
  CDO70451.1 268 MGMKHSEPEIALQAIEFWSTVCELESELAWEAseaneygevpENESKFFA---KIAMPEIVPVLLDLLTHQDEDaDED-EWDVSKAAATCLGLLAQAVQ 362
                 56777777777777777777777776665555677777644422222333...3333333444444444433332233.45666666666666666666 PP

        DRIM 424 d 424
                 d
  CDO70451.1 363 D 363
                 5 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.014
        DRIM 195 lnlledvlkelgsklapflpkllklllyclaaaq 228
                  n+ ++v+++l+  ++p++++++ l+l +++aa 
  CDO70451.1 582 SNFCASVIRKLNDGIQPLADRIMTLILQLINAAG 615
                 799************************9999887 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.012
        DRIM 379 lphvsslLeylsalleksaaskkdkskellereleiLsrlaplveds..eqassLldlllplLrkpsrrvsektkvelLkilen 460
                 +p++ss+L +l   l+        ++++l   ++ i+  ++  + d+  + +s+++++ll  L+   + ++ ++k+++L+++  
  CDO70451.1 640 APYISSFLPHLYPALKAH------EDTQLCMVAVCIIGDISRALGDQtaQYSSAFMNVLLENLQS--DVLNRNVKISILSCFGD 715
                 79*************887......4699************9998887324667999999999966..569999******99765 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.0059
        DRIM 372 eigselLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplvedseqas.sLldlllplLrkpsrrvsektk 451
                 + + +lLlphv+s+Le +++ l +s+      +++  + ++ +L  la+   + + ++  L + +   Lr +s rvs++tk
  CDO70451.1 775 TPKVDLLLPHVPSMLELVQRCLADSE-----RTENTIKLAVGLLGDLADAFPNGQIKQlLLAEWIANELRMKS-RVSPETK 849
                 56789*****************8885.....347789999*******99999998777344556666666666.7777766 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0015       2.1     246     297 ..     108     160 ..      70     202 .. 0.81
   2 !    9.1   1.5    0.0003      0.42     103     263 ..     316     484 ..     314     719 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
                 HHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCHHHHHHHH CS
   Adaptin_N 246 aVlletvnlivelapknelivlavnaLvrlls.skdenlryvaLrtllkivkk 297
                 +V   +v +i  ++      +++++ L  ++s ++ +nlr ++L+++  i++ 
  CDO70451.1 108 TVAAQVVSAIAAVELPHGQWMNVITTLLGFVSeQSSTNLRVATLQAIGFICEA 160
                 5666778888888888888999*********999999*********9999986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0003
                 HCCC--CCCHHHHHHHHHHHHT-SSH...HHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC.HHHHHHHCC CS
   Adaptin_N 103 Lssirvpelaedlapaikkllkdrsp...yvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlll.kllpklvrr 196
                  ++i +pe+++ l++ ++   +d +     v+k+Aa+++  l ++ +d + + +++ i+  +  +d  +  aAv+++ +i + +d + l  l+++   +
  CDO70451.1 316 FAKIAMPEIVPVLLDLLTHQDEDADEdewDVSKAAATCLGLLAQAVQDVIVPAVIPFIEANIRAQDWHLREAAVMTFGSIlDGPDPSVLtPLVNQALPI 414
                 678888888888888888877776667789********************999***************************9888888778888888888 PP

                 HHHHH.......HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG..CSSCHHHHHHHHHCCHCCCCST CS
   Adaptin_N 197 Lcnll.......teldpwlqvkiiklltrlarqepeerskkellesllnllq..ssnnaVlletvnlivelapkne 263
                 L +++       +++  w   +i +ll + ++ +        l + + +l++  + n+ +  +++ ++++la++  
  CDO70451.1 415 LIDMMadtnvnvKDTVAWTLGRICDLLVSTIQPDVH------LHPLISALVSglQDNPRIAANCCWALMNLADQLG 484
                 888887777877777778888888888777774444......4455555555666677777777777776666554 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.69   9.5e+02      19      73 ..     147     205 ..     129     226 .. 0.51
   2 ?   10.2   0.1   0.00021      0.29     321     421 ..     353     459 ..     320     460 .. 0.87
   3 ?    3.5   0.3     0.023        32      34     148 ..     545     693 ..     509     813 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.69
     MMS19_C  19 yervLeaLaelss.ekqlfetlvirllnkldlvlksnes...saayahailstllklle 73 
                 +  +L+a++ +++  ++  e l++r  + l++v+  + +   s++ + a +++l++ le
  CDO70451.1 147 RVATLQAIGFICEaLQNKPEILSMRSNEILTAVIHGARKeepSPDVQLAAIQALYNSLE 205
                 55556666555553333333333333333333333333333355555555555555555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00021
     MMS19_C 321 irlLykQrfFstvlpklvegfks....sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvse..hl 413
                    L  Q + + ++p ++  +++    +d + +e+  + + ++l    +s+l+p  ++ lP+L++ ++ ++ +vk  +  tl  i++   s++++  hl
  CDO70451.1 353 CLGLLAQAVQDVIVPAVIPFIEAniraQDWHLREAAVMTFGSILDGPDPSVLTPLVNQALPILIDMMADTNVNVKDTVAWTLGRICDLLVSTIQPdvHL 451
                 556777777788888888888888887**********************************************************99999999999*** PP

     MMS19_C 414 ssLvprLL 421
                 + L++ L+
  CDO70451.1 452 HPLISALV 459
                 ****9996 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.023
     MMS19_C  34 qlfetlvirllnkldlvlksnes.....saayahailstllkllekkqtdlekeellnsyydrivprlltlvvsaastss................... 108
                  +++ + + +l +++++l  +++       +    + s++++ + +k      ++ ++ ++dri+  +l+l+ +a +ts+                   
  CDO70451.1 545 PVVQNTAVTILMRMEQLLAMQNQivgadDRNNWNDLMSNFCASVIRKL-----NDGIQPLADRIMTLILQLINAAGKTSTlledaflvvgalaaaleqg 638
                 477777777777777777777777777533333355555544444444.....2456888888888888886666665556666666666666666677 PP

     MMS19_C 109 ................siltddrllevlgriinlivrslssskqqevleevvalfl 148
                                 ++++d++l+ v++ ii  i r l  ++ q    ++++++l
  CDO70451.1 639 fapyissflphlypalKAHEDTQLCMVAVCIIGDISRALGDQTAQYSS-AFMNVLL 693
                 777777777777777788889999999999999998888877665444.3333333 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   3.2e+03      59     101 ..      76     118 ..      49     195 .. 0.62
   2 ?   -2.7   0.0       3.8   5.2e+03     118     147 ..     202     230 ..     126     244 .. 0.56
   3 ?    6.0   0.0    0.0082        11      17     146 ..     323     463 ..     317     466 .. 0.74
   4 ?    7.2   0.0    0.0034       4.7      18      88 ..     407     482 ..     384     495 .. 0.79
   5 ?    4.5   0.0     0.023        32      18      49 ..     528     564 ..     508     614 .. 0.87
   6 ?   -1.5   0.0       1.6   2.2e+03      59     120 ..     646     710 ..     622     715 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
        Cnd1  59 flselaklleDenprVvanalaalteiseksenaiynllpdii 101
                   ++ + l e + ++V + al+al   + k ++ + ++++ i+
  CDO70451.1  76 YANRWLALDEGTRNKVKQDALMALASTAGKVGTVAAQVVSAIA 118
                 5555555555566677777777777766664344444433333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.8
        Cnd1 118 tilefLlsyipkdkqeaeslveklcprlqh 147
                 + lef+ +  ++d +  + +++ +c+  q 
  CDO70451.1 202 NSLEFVRDNFERDGE-RNYIMQVVCEATQS 230
                 333344444444444.55555555555554 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0082
        Cnd1  17 nlveylvepLrkrLkDedp...yVRktaaivvakL.ilndmvkekgflselaklleDenprVvanalaalteisek.se.......naiynllpdiisk 103
                 ++v  l++ L+++ +D d+    V k aa ++  L    + v++  ++  ++  ++ ++   ++ a++ +  i++  ++       n+++ +l+d++  
  CDO70451.1 323 EIVPVLLDLLTHQDEDADEdewDVSKAAATCLGLLaQAVQDVIVPAVIPFIEANIRAQDWHLREAAVMTFGSILDGpDPsvltplvNQALPILIDMMAD 421
                 555555566666555555422358888888888884333457777788888899999999999999999999999966677777777777888888888 PP

        Cnd1 104 lsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlq 146
                  + + ++   w+   i+++L+s i++d +  + l+  l++ lq
  CDO70451.1 422 TNVNVKDTVAWTLGRICDLLVSTIQPDVH-LHPLISALVSGLQ 463
                 88899999999999999999999999998.8888888877776 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0034
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselakll...eDenprVvanalaalteisek 88 
                 lv + ++ L   + D++  V+ t a ++ ++  +l  +++   +l+ l ++l     +npr+ an+  al++++++
  CDO70451.1 407 LVNQALPILIDMMADTNVNVKDTVAWTLGRIcdLLVSTIQPDVHLHPLISALvsgLQDNPRIAANCCWALMNLADQ 482
                 67777778889999*************99999966666665555555555554444559**********9999876 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.023
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL.....i 49 
                   e++++ ++++  D+ p V++ta+ ++ ++     +
  CDO70451.1 528 AYEAITSFVTHSTADTIPVVQNTAVTILMRMeqllaM 564
                 6799999********************9998665433 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.6
        Cnd1  59 flselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalne..csewgqitil 120
                 fl +l+ +l   e+++    a++++ +is+  ++++ +  +  ++ l+++l++  ++++  i+il
  CDO70451.1 646 FLPHLYPALkAHEDTQLCMVAVCIIGDISRALGDQTAQYSSAFMNVLLENLQSdvLNRNVKISIL 710
                 66666666655666777777777777777775566666666666666665444445555555555 PP

>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.47   6.5e+02      46      66 ..     239     257 ..     233     295 .. 0.79
   2 ?   10.0   0.0   0.00039      0.53      52      93 ..     440     481 ..     434     488 .. 0.89
   3 ?   -3.3   0.0       4.9   6.8e+03      43      58 ..     525     540 ..     523     582 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.47
      TIP120  46 aYetlytlletaldrldlsel 66 
                 a+e+l  +++  +d++++  +
  CDO70451.1 239 AFECLVKIMSLYYDKMNY--Y 257
                 9**********9999774..3 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00039
      TIP120  52 tlletaldrldlselldrvlaGlsDehdikllcnlmlsklva 93 
                  l++t+  +++l+ l++ +++Gl+D+  i + c+  l++l++
  CDO70451.1 440 LLVSTIQPDVHLHPLISALVSGLQDNPRIAANCCWALMNLAD 481
                 56777778899***************************9986 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.9
      TIP120  43 RKaaYetlytlletal 58 
                 R aaYe + + + +++
  CDO70451.1 525 RTAAYEAITSFVTHST 540
                 6677777776666533 PP

>> FPL  Uncharacterised conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00023      0.31      25      78 ..     128     181 ..     126     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
         FPL  25 knileklveivkqkvesevkvqllqtlsillqnikkktslyyllSnnhinelie 78 
                 +n++++l+ +v+++++++++v  lq + ++ + +++k ++  + Sn+++  +i+
  CDO70451.1 128 MNVITTLLGFVSEQSSTNLRVATLQAIGFICEALQNKPEILSMRSNEILTAVIH 181
                 58999*******************************************999986 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0063       8.6      86     138 ..     129     184 ..      91     207 .. 0.80
   2 ?   -0.4   0.0      0.67   9.2e+02     105     156 ..     386     437 ..     333     441 .. 0.75
   3 ?    1.8   0.1      0.15     2e+02      82     127 ..     503     548 ..     487     569 .. 0.69
   4 ?    0.6   0.2      0.34   4.7e+02      72     147 ..     533     622 ..     514     636 .. 0.64
   5 ?   -2.3   0.0       2.6   3.5e+03       8      36 ..     785     814 ..     783     817 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0063
     DUF3385  86 vvinaLlrilkdpslsshhaavveaimnifktlglkc..vp.fLdqiipallsvir 138
                  vi++Ll  ++++s ++ + a+++ai +i++ l+ k   ++   ++i+ a+++  r
  CDO70451.1 129 NVITTLLGFVSEQSSTNLRVATLQAIGFICEALQNKPeiLSmRSNEILTAVIHGAR 184
                 58999999999999999999999999999998876643222133456666655555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.67
     DUF3385 105 aavveaimnifktlglkc.vpfLdqiipallsvirtteesnlrefllqqLatL 156
                 +a+v +  +i+   + ++ +p+++q +p l+ ++ +t+  n+++++ + L+ +
  CDO70451.1 386 EAAVMTFGSILDGPDPSVlTPLVNQALPILIDMMADTNV-NVKDTVAWTLGRI 437
                 455556666666666666678899999999999998766.9999888888776 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.15
     DUF3385  82 yyptvvinaLlrilkdpsls.shhaavveaimnifktlglkcvpfLd 127
                 yy+  v++aLlr+ +  + + +h++a+ eai++ +++     +p+++
  CDO70451.1 503 YYEG-VVQALLRLTETTTSEgQHRTAAYEAITSFVTHSTADTIPVVQ 548
                 4444.677888888777666688888888888777766655555554 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.34
     DUF3385  72 mvglspsneeyyptvvinaLlrilkdpslsshhaavveai.............mnifktlglkcvpfLdqiipallsvirtte.esnlre 147
                 +  +++s+ + +p v  +a+  +++ ++l  +++++v a               +++++l+ +  p+ d+i+  +l++i+ +  +s+l+e
  CDO70451.1 533 TSFVTHSTADTIPVVQNTAVTILMRMEQLLAMQNQIVGADdrnnwndlmsnfcASVIRKLNDGIQPLADRIMTLILQLINAAGkTSTLLE 622
                 444456667777776666655555666666666666666666666666666667888999999999999999999999985531345555 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.6
     DUF3385   8 ypqLLelLlnilkteq.sqsirrevikllG 36 
                  p++Lel++++l  ++ ++++ + ++ llG
  CDO70451.1 785 VPSMLELVQRCLADSErTENTIKLAVGLLG 814
                 589999999999987424444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.79u 0.36s 00:00:01.14 Elapsed: 00:00:00.52
# Mc/sec: 4987.79
//
Query:       CDO70452.1  [L=191]
Description: hypothetical protein BN946_scf184496.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1302.19
//
Query:       CDO70453.1  [L=85]
Description: hypothetical protein BN946_scf184496.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 619.83
//
Query:       CDO70454.1  [L=130]
Description: hypothetical protein BN946_scf184496.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.7  10.0    1.5e-13   51.4  10.0    1.1  1  MU117     Meiotically up-regulated gene family


Domain annotation for each model (and alignments):
>> MU117  Meiotically up-regulated gene family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4  10.0   8.2e-18   1.5e-13       1      97 [.      34     127 ..      34     130 .] 0.83

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 8.2e-18
       MU117   1 vdckGsslCstvkakaCdeAleklyeddtiydkytsrteesksvegkakCtaiytc...ddyevtgkelkekaesirkkggckk.CGsktls....nsC 91 
                 ++ckGs+lCs++ +++C++A+ +++ ++++ ++ ++         + ++C++iy++    ++ev+g++++++a++i ++  c+  CGs   +    +sC
  CDO70454.1  34 NNCKGSGLCSNTIRSDCEKAIATVNPSSSY-SDQAQ--------FSVGHCYMIYATngaGAQEVSGQTIIDTANTILEN--CSGvCGSYGTNnvgcSSC 121
                 69********************98888887.33222........2269********7655566***************9..5544999888888899** PP

       MU117  92 kvtlny 97 
                 +vtlny
  CDO70454.1 122 HVTLNY 127
                 ****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 875.79
//
Query:       CDO70455.1  [L=1173]
Description: hypothetical protein BN946_scf184496.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-48  163.5   1.2    9.7e-30  103.8   0.0    3.6  4  MIF4G      MIF4G domain
    2.6e-29  102.7   4.9    2.6e-29  102.7   4.9    3.4  2  Upf2       Up-frameshift suppressor 2
  ------ inclusion threshold ------
       0.39   11.4   3.0          1   10.0   0.6    2.9  3  AATF-Che1  Apoptosis antagonizing transcription factor


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.6e-05     0.094       4      84 ..      73     154 ..      71     197 .. 0.82
   2 !   43.6   0.5   4.2e-15   2.5e-11      27     207 ..     547     709 ..     522     714 .. 0.83
   3 !  103.8   0.0   1.6e-33   9.7e-30       7     211 ..     735     936 ..     729     937 .. 0.96
   4 ?   -4.1   0.2       1.7     1e+04      74     102 ..    1137    1161 ..    1128    1165 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                 HHHHHHCHTTTTHHHHHHHHHHHHHCS.CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH CS
       MIF4G   4 vkgilnklskenfevlikqllklamdd.dknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefe 84 
                 +k+i+  ++ en ++++k++++l  +   ++    v e i  + +e+  +s   a+++++l+ rf+++F+ +l+++l   + 
  CDO70455.1  73 IKRIRQSVGAENHDQILKDINSLSLEKyVDEIVGAVAEGILRCKTEKDVWSAVEAQVISALHRRFPKTFTPALISALSALLA 154
                 68999999999*********999999995599*****************************************998866555 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 4.2e-15
                 HHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHH CS
       MIF4G  27 amdddknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnrrrrlglvrflgelfklkmltskil 125
                 a  + k+++k +++ + +++ ++ + +p+y+rl++ ln +++ ++++ ++++l eef+    l+ +++  ++  ++ rl +++fl+ l k+ +++ +++
  CDO70455.1 547 AFLNSKAARKRLVKFMNQIPKSRTDLLPHYSRLIAILNRYMP-DIGSDIVAMLDEEFRY---LQRKKNVVKEL-SEVRLRNITFLSNLTKFRVVPPHVI 640
                 3344689***********************************.****************...33344444333.4557889****************** PP

                 HHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHHHHHHHHHHH CS
       MIF4G 126 ldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqelssrirfmlkdlie 207
                 l+ +k +l+++             ++e l+ ll+ +g+ l ++e+++    ++++ ++++ +    ++l+ r  ++l++ ++
  CDO70455.1 641 LHMFKVCLDDFSG----------TNVENLALLLEGCGRFLLRSEETRVPFAKMLELMRRKQSM---AHLDQRQLLLLENAYY 709
                 *************..........99****************9999999999999999988887...6777777777777665 PP

  == domain 3  score: 103.8 bits;  conditional E-value: 1.6e-33
                 HHHCHTTTTHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHHHHHH CS
       MIF4G   7 ilnklskenfevlikqllklamdddknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnrrrrl 105
                 i   l+k+ +++ +k l+kl ++d +  l ++ + + + +  ++s ++l+a l+  l+ +++  F+ +++++++e++++      +le n ++ ++rr+
  CDO70455.1 735 IYDVLTKKTIDKVLKLLRKLDWND-PIVLRTLHKVFTKPWKIKYSHISLLAMLTYDLHRYHP-AFSVGVVDQVLEDIRR------GLETNMYSMNQRRI 825
                 5556999****************9.9999999999999999999******************.****************......************** PP

                 HHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSC........CHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSSH CS
       MIF4G 106 glvrflgelfklkmltskilldclkellssltketad........dppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqelss 196
                 + +++lgel+ + +++s+i++d+l +l  +++ e ++        d p+d ++i++++ ll+t+g  ++ +    k+ld+f+  +q +++++  + l++
  CDO70455.1 826 ASIKYLGELYIYRLISSSIIFDTLWTLVTFGHPEGRPtpgqpspiDMPDDFFRIRLVCVLLDTCGMCFD-RGPHEKKLDNFLVFFQMYILSK--DPLPM 921
                 *********************************9999********************************.*********************8..***** PP

                 HHHHHHHHHHHHHHT CS
       MIF4G 197 rirfmlkdlielkkn 211
                 +++fml d +e +++
  CDO70455.1 922 DVEFMLTDSLEAVRP 936
                 ********9998776 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHC-S-HHHHHHHHHHHH CS
       MIF4G   74 kllnklqeefekryeleneleenedgnrr 102 
                    l +l+ ++e+r    +e ee ++ + r
  CDO70455.1 1137 QHLKRLVLNYEQR----EEAEELKALEAR 1161
                  5567788888885....455555554444 PP

>> Upf2  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   2.4       0.3   1.8e+03      12      33 ..     444     472 ..     434     522 .. 0.45
   2 !  102.7   4.9   4.3e-33   2.6e-29      15     136 .]    1022    1145 ..     979    1145 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.3
        Upf2  12 evdp.......eeeeeFerelakmmaesl 33 
                 e+++       ee   +e+ela m ++  
  CDO70455.1 444 EKERiekemvdEEFRKLEEELAEMKLDED 472
                 23331112133444445666666665432 PP

  == domain 2  score: 102.7 bits;  conditional E-value: 4.3e-33
        Upf2   15 p......eeeeeFerelakmmaesl.esrknerkkapql.dvplPmnvkkkkkkaeesesssekaaeeaeeepeaekskkvaFtLLtkkgnKqqtkt 103 
                  +      e+e+eF +elak++++++ esrk ++k+a +l d +lP  v +kkk+++++e+       e +  +++e+ + ++FtL+tk+gnK+qt++
  CDO70455.1 1022 EfvgpteEDEAEFAKELAKLVTDTSaESRKIDKKTALALwDTALPPPVVRKKKNEDYDEE------GEGPAGEASEDAGVMKFTLFTKRGNKPQTRQ 1112
                  033447799*************988799*******9*********999866666344433......2333334455679****************** PP

        Upf2  104 levPsdsslaqstreqeeaekeEkeriKrlvLn 136 
                  +++P++s+la++tr+ ++++k E++++KrlvLn
  CDO70455.1 1113 IAIPAESALAVQTRTAQMQDKVEHQHLKRLVLN 1145
                  ********************************8 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.6   0.00018         1      41     120 ..     326     466 ..     307     472 .. 0.73
   2 ?   -2.0   0.0      0.92   5.5e+03      55      82 ..     551     579 ..     525     633 .. 0.63
   3 ?   -1.7   0.0      0.74   4.5e+03      86     118 ..     948    1005 ..     925    1016 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
   AATF-Che1  41 lkefles...seefeealeeaekalkklleslleLreelleqne.ikkla................................................. 86 
                 ++++++s    e+ ++a+e++ k+++kll s+ +L e l    + +k+++                                                 
  CDO70455.1 326 HEAYIRSgeiFEDRQQAYEKMTKSYEKLLASCQSLSELLYLPMPtLKTATqktesiqigmntgssilgpdgedttaggkwedeeerrfyedipdlkeyv 424
                 44555556664678999**********************7777755555588888999999***********999999999999999999999999999 PP

   AATF-Che1  87 ........eskeeeekkkskrkrkkkkkeetsleelwkelek 120
                         ++  +e++++++++r +k+  ++++ +l++el++
  CDO70455.1 425 prsvlgleDNGGDETEESKEKERIEKEMVDEEFRKLEEELAE 466
                 999999873333333344444444445555556666666555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.92
   AATF-Che1  55 leeaekalkklleslleLreelleqne.i 82 
                 +++a+k l k+++++ + r++ll  ++ +
  CDO70455.1 551 SKAARKRLVKFMNQIPKSRTDLLPHYSrL 579
                 46667777777777777776665555542 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.74
   AATF-Che1   86 a.........................eskeeeekkkskrkrkkkkkeetsleelwkel 118 
                  a                          ++++ee+++++++  ++++ee +l++  +e+
  CDO70455.1  948 AtavdemfaialqnagivtgdggddsGEESGEEDEEETERGVREEDEEDELAQGDDEI 1005
                  2455666666666666666667666533333444444444444455555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.35s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 6894.87
//
Query:       CDO70456.1  [L=240]
Description: hypothetical protein BN946_scf184496.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.2   0.3      0.025   14.5   0.3    1.4  1  DUF4360   Domain of unknown function (DUF4360)
       0.97    8.3   6.3       0.23   10.3   3.0    1.5  2  Spc7      Spc7 kinetochore protein
        2.8    8.4   7.9        9.7    6.6   5.9    2.5  2  CENP-H    Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> DUF4360  Domain of unknown function (DUF4360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   4.1e-06     0.025      23      97 ..      15      89 ..       5     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
     DUF4360 23 qvspdrtaftvtfdeftaqigpgasatdrrknCqlnlnlqvpaGfqfavvsadyrGyasldagvtatfqatyyfs 97
                  +  +++++ +f+e++ +ig  ++ t r  +C+ln ++q++a  ++  +  + rG +++ ++++a++ a    +
  CDO70456.1 15 GKNLTKKQLEALFEELQREIGALTNVTARGLSCTLNPAAQTEAETSLETAHETIRGQVEALNNARAEVAAAEEGA 89
                5556678999*************************************************9999999988765555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   3.8e-05      0.23     169     254 ..      20     114 ..      13     120 .. 0.78
   2 ?   -2.2   0.1      0.25   1.5e+03     195     214 ..     178     197 ..     143     218 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.8e-05
        Spc7 169 lpeleeekaeleeeleklqe.........aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                 +++le+ ++el++e+  l +          +   ++  +++Le+++e+++ + + +++ ++e+a  +e  ++ +++ ++++e ++ l+ ++++ e
  CDO70456.1  20 KKQLEALFEELQREIGALTNvtarglsctLNPAAQTEAETSLETAHETIRGQVEALNNARAEVAAAEEGANAARAQAAAAEEVRDALQVQLNQVE 114
                 57788888888888888888555555554222233356889999999999999999999999999999999999999999999999999988876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.25
        Spc7 195 sidkeeLeelreelaelkae 214
                   d ++L+++ ++  ++k +
  CDO70456.1 178 RQDADKLANMFRAYMQNKRK 197
                 34444444444444444444 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   2.6      0.15   8.8e+02      47      84 ..      57      98 ..      16     108 .. 0.55
   2 ?    6.6   5.9    0.0016       9.7      12     103 ..      72     175 ..      37     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
      CENP-H 47 aaellelakekesek......eklkeelekleaelkksrqrwrv 84
                a++ le+a e+   +      +++++e++++e+  +++r+++  
  CDO70456.1 57 AETSLETAHETI--RgqvealNNARAEVAAAEEGANAARAQAAA 98
                222223333222..133666666677777777777776666554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0016
      CENP-H  12 ssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek............eklkeelekleaelkksrqrwrvvknvasaiivgSgV 98 
                 +++l +  +e+++++e  + +++++ ++++    l  +l + + ++  ++            ++ + +  ++++ ++  r+    ++++++ +++ S+ 
  CDO70456.1  72 VEALNNARAEVAAAEEGANAARAQAAAAEEVRDALQVQLNQVEAAAGGDQagaaanpiipliDRPTGSGWSIREAMEVNRADYAEIQRTIRSLVIRSQL 170
                 455555566666666666666666666666666666666322222222224677777787776677777889999************************ PP

      CENP-H  99 dWaeD 103
                 dW +D
  CDO70456.1 171 DWTDD 175
                 ***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1433  (0.0799264); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.54
# Mc/sec: 1342.30
//
Query:       CDO70457.1  [L=410]
Description: hypothetical protein BN946_scf184496.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-17   61.8   0.0      1e-16   60.8   0.0    1.4  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    3.9e-08   32.8   0.4    8.6e-08   31.7   0.4    1.6  1  DUF4219          Domain of unknown function (DUF4219)
  ------ inclusion threshold ------
      0.024   15.1   1.4      0.055   14.0   1.4    1.5  1  DUF4687          Domain of unknown function (DUF4687)
       0.72   10.0   5.2        0.2   11.8   1.3    2.0  2  CPSF100_C        Cleavage and polyadenylation factor 2 C-term


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   2.3e-20     1e-16       1     129 [.      61     191 ..      61     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 2.3e-20
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w++ ++ka++ I+l ++d++ +lvk+++takevW+ Lk+ly  +sa   +  +k   ++++  +e     i+k++   ++L+++g +++ ++++
       CDO70457.1  61 WNQMQSKAMGSIRLRLNDEVAKLVKDKTTAKEVWEELKSLYSTTSALGAYSFYKAAANTRIPANEHPGPAIAKIQGNLDQLASAGIDVPMNLRA 154
                      8999****************************************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyetfvtaies..seedltleeviekll 129
                      +++L   P++yet ++ + +  +  dl+   v e+l+
       CDO70457.1 155 LIILDAAPPRYETAIQLVLNdnELNDLSTSAVREALV 191
                      ****************999977778888888888876 PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.4   1.9e-11   8.6e-08       1      27 []      12      38 ..      12      38 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.9e-11
     DUF4219  1 LdgtNYatWklrMklyLiaqdLWevVe 27
                Ldg+NY  W+  Mk+yL+ q++W vV+
  CDO70457.1 12 LDGSNYQRWAELMKAYLQQQEVWFVVN 38
                8**********************9996 PP

>> DUF4687  Domain of unknown function (DUF4687)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.4   1.2e-05     0.055      24      95 ..     179     256 ..     171     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
     DUF4687  24 GdlspsasalamvsGDsllvarP.....eailpglvprqavrpsvrte.srrataggrsptrlikGrdldgrsrsrqa 95 
                  dls+sa+  a+v+   + v+r      ea +   + r+   p+++++ +rr  + g s  +  kG++  g+++sr++
  CDO70457.1 179 NDLSTSAVREALVASWEASVTRGsrkigEAKKLSAIKRKGKEPTFKQQqQRRQNGDGSSQQQQQKGKARRGKRKSRKS 256
                 699**********99999999963333367777788999999**99761678889999999**************987 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   4.6e-05       0.2       3      83 ..     173     263 ..     171     307 .. 0.55
   2 ?   -1.1   0.1      0.43   1.9e+03      37      67 ..     333     363 ..     311     384 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
   CPSF100_C   3 LsdsLvksLkwqkveglevatvtgeleieee.....a.....eeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekkes 83 
                 L+d+ ++ L  + v++  va  +++++  ++     +     +++ +e + +++++  +++++ +++++qk ++ + k++s+++s+++++ 
  CDO70457.1 173 LNDNELNDLSTSAVREALVASWEASVTRGSRkigeaKklsaiKRKGKEPTFKQQQQRRQNGDGSSQQQQQKGKARRGKRKSRKSSDNDHAH 263
                 67777899******************96665666551555542222233333333333333333333333332222222222222222222 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.43
   CPSF100_C  37 aeeeekeeeeeeeeeeeeeeeaskkqklaek 67 
                 + e+++   e +++ ++ + ++sk+ +l+ +
  CDO70457.1 333 KGENASRIVEVSSDTDSADSHSSKRTRLTLA 363
                 3344444455555555556666666666222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1522  (0.0848904); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2908.29
//
Query:       CDO70458.1  [L=98]
Description: hypothetical protein BN946_scf184569.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 651.55
//
Query:       CDO70459.1  [L=220]
Description: hypothetical protein BN946_scf184569.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00059   19.6   1.1        1.6    8.6   0.2    2.9  3  HSBP1         Heat shock factor binding protein 1
     0.0024   18.0   1.4     0.0097   16.1   1.1    2.1  2  DUF5446       Family of unknown function (DUF5446)
     0.0025   18.0   1.3      0.062   13.6   0.2    2.6  2  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.043   14.5   0.5       0.65   10.7   0.0    2.4  2  AKNA          AT-hook-containing transcription factor
      0.061   13.2   0.7       0.99    9.2   0.0    2.1  2  PIN_8         PIN like domain
      0.071   13.6   0.0       0.16   12.5   0.0    1.5  1  DUF16         Protein of unknown function DUF16
      0.099   12.9   0.1       0.15   12.3   0.1    1.3  1  IL4           Interleukin 4
       0.13   11.5   2.5       0.22   10.8   2.5    1.3  1  DUF3450       Protein of unknown function (DUF3450)
        1.3    9.3   4.7        5.7    7.2   0.1    2.7  3  XhlA          Haemolysin XhlA


Domain annotation for each model (and alignments):
>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   3.7e+03      24      32 ..      90      98 ..      89     100 .. 0.70
   2 !    8.4   0.0   0.00093       1.8      25      41 ..     134     150 ..     131     151 .. 0.90
   3 !    8.6   0.2   0.00081       1.6      31      47 ..     178     194 ..     176     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
       HSBP1 24 qilsriDdM 32
                ++l+++D++
  CDO70459.1 90 KVLNKLDEL 98
                567888875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00093
       HSBP1  25 ilsriDdMssriDdLEk 41 
                 +ls+i ++++r+D LE+
  CDO70459.1 134 LLSKIKELGQRVDVLEE 150
                 89**************7 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00081
       HSBP1  31 dMssriDdLEksiadlm 47 
                  M++r+D++E+ i +l 
  CDO70459.1 178 SMERRLDSIEREIRSLN 194
                 5************9886 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.88   1.8e+03      26      43 ..     139     156 ..     135     168 .. 0.64
   2 !   16.1   1.1   4.9e-06    0.0097      39      69 ..     175     205 ..     149     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.88
     DUF5446  26 kelseavneteaekeeke 43 
                 kel+++v  +e   +  e
  CDO70459.1 139 KELGQRVDVLEEHDRTRE 156
                 566666666555544444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.9e-06
     DUF5446  39 keekeeerldllekElkdLvlCigklekaee 69 
                   +  e rld +e+E+  L  C++  e++e+
  CDO70459.1 175 GFSSMERRLDSIEREIRSLNECMNTAEVGEQ 205
                 44789********************999986 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.072   1.4e+02      41      65 ..     136     160 ..     119     163 .. 0.87
   2 !   13.6   0.2   3.1e-05     0.062      10      54 ..     176     218 ..     169     220 .] 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.072
  ABC_tran_CTD  41 eklaelsaeleeleaeLeelyerWe 65 
                    k++el ++ + le+   + +e+W 
    CDO70459.1 136 SKIKELGQRVDVLEEHDRTREEEWA 160
                   5899999999999999999999996 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.1e-05
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleele 54 
                   +  +e++++++E ei +l++ ++ +e+   +++ +el   +e l+
    CDO70459.1 176 FSSMERRLDSIEREIRSLNECMNTAEVG--EQTQQELYDMYESLQ 218
                   6789**********************65..556777777777776 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.65      34      61 ..     125     151 ..     108     163 .. 0.78
   2 ?    1.7   0.2      0.21   4.1e+02      21      67 ..     166     208 ..     151     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
        AKNA  34 qpgkfdpsreleaeIyqlgqrleeLkdq 61 
                  p k +p r l  +I  lgqr++ L ++
  CDO70459.1 125 DP-KPSPTRVLLSKIKELGQRVDVLEEH 151
                 33.45999*****************998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
        AKNA  21 setlaqklssskgqpgkfdpsreleaeIyqlgqrleeLkdqtdqlkq 67 
                  e la++ s+  ++++++d+   +e eI  l+++++   +  +q++q
  CDO70459.1 166 VEMLARQHSGFSSMERRLDS---IEREIRSLNECMNT-AEVGEQTQQ 208
                 46778888888789999887...99999888887652.344444444 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0005      0.99     113     153 ..      75     114 ..      43     120 .. 0.71
   2 ?    2.4   0.2     0.062   1.2e+02     100     151 ..     156     207 ..     133     218 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0005
       PIN_8 113 eleelkksskadkeedpilkkleellegkigealskeelee 153
                 + + + ++ +++    ++l+kl+el+eg+ g++++kee++e
  CDO70459.1  75 TPSPIAEQEPENP-YTKVLNKLDELFEGRYGSSINKEEWSE 114
                 3444455555543.589**********************76 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.062
       PIN_8 100 kkqleelkeelkaeleelkksskadkeedpilkkleellegkigealskeel 151
                 +++ +++k ++++ ++++++ s+ +++ d+i+++++ l e   ++++ +++ 
  CDO70459.1 156 EEEWAAMKGRVEMLARQHSGFSSMERRLDSIEREIRSLNECMNTAEVGEQTQ 207
                 3444445555544444444444555555555555555543333333333333 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.8e-05      0.16      52     103 ..     133     187 ..     118     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHH...HHHHHHHHHHHC CS
       DUF16  52 kleqkvekqgekikelkveqkaqgeelnkvdetlelilet...LqkinkRlDsie 103
                 +l  k++++g++++ l+++  +++ee  +++  +e++++      +++ RlDsie
  CDO70459.1 133 VLLSKIKELGQRVDVLEEHDRTREEEWAAMKGRVEMLARQhsgFSSMERRLDSIE 187
                 5778999********************9999999999865333889********9 PP

>> IL4  Interleukin 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.8e-05      0.15      29     102 ..     145     219 ..     136     220 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
         IL4  29 advfaapkntteketlCraatvLrqvykkhekeclkklLkkldRnlsslan.ltkCpvneakkttlkDflerLKt 102
                 +dv+++   t e+e      +v   + ++   + +++ L  ++R+++sl++ +++  v e+++++l D+ e+L++
  CDO70459.1 145 VDVLEEHDRTREEEWAAMKGRVEMLARQHSGFSSMERRLDSIEREIRSLNEcMNTAEVGEQTQQELYDMYESLQS 219
                 689999999999998887777766666666666999*************98356789**************9975 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.5   0.00011      0.22      33     110 ..     139     218 ..     132     220 .] 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     DUF3450  33 aqsqkkidklddekqellaeyralkeeleslevyne...qlerlvasqeqeiasleeqieeieeierelvpllekmidrLe 110
                 ++  +++d l++  ++ ++e  a+k ++e l+ + +    +er ++s e+ei sl+e ++ +e  e + ++ l++m ++L+
  CDO70459.1 139 KELGQRVDVLEEHDRTREEEWAAMKGRVEMLARQHSgfsSMERRLDSIEREIRSLNECMNTAEVGE-QTQQELYDMYESLQ 218
                 56679999**********************9999853337999**************999987665.57778899999997 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       3.4   6.8e+03      24      34 ..      58      68 ..      54      70 .. 0.67
   2 ?    7.2   0.1    0.0029       5.7      11      36 ..     136     161 ..     134     172 .. 0.83
   3 ?    3.6   0.0     0.039        77       9      31 ..     179     201 ..     176     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.4
        XhlA 24 eekaaeaeeki 34
                ++++a+a+++i
  CDO70459.1 58 KRDEARAKQRI 68
                67777777776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0029
        XhlA  11 tkldnleervdkleekaaeaeekikn 36 
                 +k+++l++rvd lee+ ++ ee+   
  CDO70459.1 136 SKIKELGQRVDVLEEHDRTREEEWAA 161
                 599*************9999987655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.039
        XhlA   9 ietkldnleervdkleekaaeae 31 
                 +e++ld++e ++  l+e +++ae
  CDO70459.1 179 MERRLDSIEREIRSLNECMNTAE 201
                 78888888888777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1627.84
//
Query:       CDO70460.1  [L=662]
Description: hypothetical protein BN946_scf184569.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 3421.41
//
Query:       CDO70461.1  [L=390]
Description: hypothetical protein BN946_scf184569.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-64  217.3   0.0    2.9e-64  217.0   0.0    1.1  1  Pkinase        Protein kinase domain
    2.1e-27   96.0   0.0    3.2e-27   95.5   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    4.6e-05   22.9   0.0    6.9e-05   22.3   0.0    1.2  1  Kinase-like    Kinase-like
    0.00024   20.5   0.1    0.00041   19.8   0.1    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00069   19.3   0.0     0.0014   18.2   0.0    1.5  1  RIO1           RIO1 family
     0.0026   17.7   0.3       0.26   11.2   0.2    2.3  2  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.018   14.0   0.3      0.039   12.9   0.3    1.4  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.0   0.0   1.1e-67   2.9e-64       1     264 []      44     339 ..      44     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 217.0 bits;  conditional E-value: 1.1e-67
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS....CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk....hpnivrlyevfee.....kdelylvleyveggeladlle 90 
                 y++l  +GeG++G V +a+++++g++vA+Kki+  + +     ++lrE+k+lk l+    ++ni+ ++++++       +e+yl++e++e++ ++++++
  CDO70461.1  44 YQVLDVVGEGAYGIVCSAIHRSSGRKVAIKKIAPFDHSM-FCLRTLRELKLLKFLSeagvSENIISILDIIKPpsieqFKEVYLIQELMETD-MHRVIR 140
                 788899**************************9887665.6679*********99999999*********999888889***********77.899996 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH.TTSCBSHHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl.keneyskkvDvW 181
                   + ls+++a+ +++q+l++l+ lHs+ +iHrDlKp+N+L++ + +lK++DFGla+ +++ ++       +t++v+t++Y+APE++ + ++y+k++D+W
  CDO70461.1 141 -TQDLSDDHAQYFIYQTLRALKALHSADVIHRDLKPSNLLLNANCDLKVCDFGLARSVRTAEPsgtetgfMTEYVATRWYRAPEIMlTFKQYTKAIDIW 238
                 .688*******************************************************999999********************9889********** PP

                 HHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS...........................-HHHHHHHHHHT-SSG CS
     Pkinase 182 slGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkeklpeasei...........................seeakdllkkllkkdp 249
                 s+G+il+e+l+gkp+f+g++         +ql+ il++lg    +      e + i                           ++ a+d+l++ l+ dp
  CDO70461.1 239 SVGCILAEMLSGKPLFPGRDY-------HHQLTLILDVLGtptlD------EFYAIttrrsrdyiralpfrkrkpfaqlfpnaNPLAIDFLTRTLTFDP 324
                 *****************4443.......44555677777743221......22222334455667889999999********9**************** PP

                 CCSTTHHHHHTSGGG CS
     Pkinase 250 kkRltaeellqhpyl 264
                 kkR+t+ee+l+hpyl
  CDO70461.1 325 KKRITVEEALAHPYL 339
                 *************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   1.2e-30   3.2e-27       4     208 ..      47     256 ..      44     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 1.2e-30
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-....BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklk....hpnivkllgvct.....keepllivteyvkgGdLlkfL 92 
                   + +GeGa+G V+++  +    ++  kVa+K++    ++    + l+e+k++k l+     +ni+++l ++      + ++++++ e+++  d++  +
   CDO70461.1  47 LDVVGEGAYGIVCSAIHR----SSGRKVAIKKIAPFDHSMFCLRTLRELKLLKFLSeagvSENIISILDIIKppsieQFKEVYLIQELMET-DMHRVI 139
                  5789************99....8999*******99999999999999999988774223369********99887766677********86.9***** PP

                  HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS.-HHHHH.HSEEEHH CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWm.apEslk.ekkftsk 185
                  r++    l+ ++   f++q  ++++ L+s +++Hrdl   N Ll+ n   k++DfGLar++ + +     +   ++ +  +W+ apE++   k++t++
   CDO70461.1 140 RTQ---DLSDDHAQYFIYQTLRALKALHSADVIHRDLKPSNLLLNANCDLKVCDFGLARSVRTAEPSgteTGFMTEYVATRWYrAPEIMLtFKQYTKA 234
                  *98...999****************************************************66665532233345678999*98***8751567**** PP

                  HHHHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 186 sDvWsfGvllwEiftlgespypg 208
                   D+Ws G +l E+++ g+  +pg
   CDO70461.1 235 IDIWSVGCILAEMLS-GKPLFPG 256
                  **************9.7766665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.7e-08   6.9e-05     131     240 ..     135     244 ..     103     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.7e-08
  Kinase-like 131 lqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrgg...ytrknkt 225
                  ++ +  t+    ++a+  +  q +r    L++  ++h ++++ nlll+ +  l++ +f+  + + t  + s +e gf   E ++ r       +    
   CDO70461.1 135 MHRVIRTQDLSDDHAQYFI-YQTLRALKALHSADVIHRDLKPSNLLLNANCDLKVCDFGLARSVRTAEP-SGTETGFMT-EYVATRWYrapEIMLTFK 229
                  3333333444556777777.99*************************************9999999999.******986.555554332333344567 PP

  Kinase-like 226 kmthkldaWqlGlvi 240
                  ++t ++d W +G   
   CDO70461.1 230 QYTKAIDIWSVGCIL 244
                  8999********865 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.6e-07   0.00041      51     162 ..      80     187 ..      57     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.6e-07
         Kdo  51 fklgrtravrEfrllkrLeeagvavpkpvaag.avk..vgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlya 146
                 +++  +r  rE++llk L eagv    +     ++   ++ +    l+ e +e   d+  ++++ ++l++   +  + ++ r+ + lh+a+v H+dl +
  CDO70461.1  80 HSMFCLRTLRELKLLKFLSEAGVSENIISILDiIKPpsIEQFKEVYLIQELME--TDMHRVIRT-QDLSDDHAQYFIYQTLRALKALHSADVIHRDLKP 175
                 456678999*************9754433333033311444467777777777..599999996.77999***************************** PP

         Kdo 147 knillqqeeeeeaeiw 162
                  n+ll+++   +  + 
  CDO70461.1 176 SNLLLNANC--D--LK 187
                 *****9986..3..33 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.6e-07    0.0014      70     159 ..     113     203 ..      79     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.6e-07
                 --S--EEEEETTEEEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G..TTEEETTSTT CS
        RIO1  70 vpvPkpielkrhvlvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv..sQaveldhpn 159
                 ++ P+  ++k+  l+ e++++d  ++ + +d++ +++a+   +++l++++ +++ a ++H DL   N+l++ + ++ + D+  + +v +++p+
  CDO70461.1 113 IKPPSIEQFKEVYLIQELMETDMHRVIRTQDLS-DDHAQYFIYQTLRALK-ALHSADVIHRDLKPSNLLLNANcDLKVCDFglARSVRTAEPS 203
                 4557777888889*******9999999999999.8899999999999655.556*******************99999998224667777765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0024       6.2      37     109 ..      87     167 ..      63     168 .. 0.87
   2 !   11.2   0.2    0.0001      0.26     158     196 ..     159     194 ..     153     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTE.EEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHCCHHCH. CS
         APH  37 irrevallrlLakagv..pvPevlagdtddeeigl.lfalieyvpgrsllr.....klsaaqlpellealgeflaalhqvd 109
                 + re++ll++L++agv   +  +l++ +    + + +++li+ +  ++++r      ls+++++ ++++  ++l+alh++d
  CDO70461.1  87 TLRELKLLKFLSEAGVseNIISILDIIKPPSIEQFkEVYLIQELMETDMHRvirtqDLSDDHAQYFIYQTLRALKALHSAD 167
                 67999***********99777777777677777777899999999999999999999999999999************986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0001
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 al +   ++ ++H+Dl+p Nll++++ +    v Df++a
  CDO70461.1 159 ALKA-LHSADVIHRDLKPSNLLLNANCDLK--VCDFGLA 194
                 4444.467889*************554444..8888887 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.5e-05     0.039     125     257 ..      69     197 ..      44     206 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
  Haspin_kinase 125 evvlKviplevledvtiskelsl...kelkslklvk..gtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev...klkswkqalsif 212
                    +v++K+i+      + +s + +l    elk lk +   g+ ++ ++ + d ++  +     eq   ++l+ + + td+ +v   +  s ++a+   
     CDO70461.1  69 KVAIKKIAP-----FDHS-MFCLrtlRELKLLKFLSeaGV-SENIISILDIIKPPS----IEQFKEVYLIQELMETDMHRVirtQDLSDDHAQYFI 153
                    444444422.....3333.444422266666665542133.444444445444444....345555677777777888887733334456788888 PP

  Haspin_kinase 213 wqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    +q++  L++  +  +  HRdL+  n L+++n    ++d+ l+R  
     CDO70461.1 154 YQTLRALKALHS-ADVIHRDLKPSNLLLNANCDLKVCDFGLARSV 197
                    999999988765.5888**************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.56
# Mc/sec: 2103.70
//
Query:       CDO70462.1  [L=318]
Description: hypothetical protein BN946_scf184569.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-10   40.6   3.4    2.2e-07   31.3   0.1    2.2  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   1.2e-11   2.2e-07      25      86 ..      55     116 ..      41     128 .. 0.88
   2 !   10.4   0.5   3.4e-05      0.61     130     146 .]     124     140 ..     116     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.2e-11
         HET  25 eltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelvivalgsese 86 
                 ++ + +++++  +r+ g+ ++WiD+ CI++++++e s+ +++m + Ys+A ++++ + + + 
  CDO70462.1  55 RVSAKIRNCCALARRFGYDFVWIDSCCIDKTSSAELSEAINSMYEWYSKAGVCFAFMEDVDG 116
                 7889999********************************************99998877664 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 3.4e-05
         HET 130 eellespwfkRvWvlQE 146
                 +++  s+wf+R+W+lQE
  CDO70462.1 124 STFRASRWFTRGWTLQE 140
                 567789**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2253.09
//
Query:       CDO70463.1  [L=147]
Description: hypothetical protein BN946_scf184569.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-18   64.9   0.0    8.8e-18   64.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.2e-08   34.4   0.0    3.8e-08   33.6   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.8e-07   30.1   0.0    5.1e-07   29.7   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0023   18.0   0.0     0.0035   17.4   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.012   15.5   0.0       0.02   14.8   0.0    1.3  1  FR47             FR47-like protein
      0.067   13.9   0.0      0.088   13.5   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0     3e-21   8.8e-18      31     116 ..      25     119 ..       3     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 3e-21
                     TTC.EEEEEEET.....TEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHH.TT CS
  Acetyltransf_1  31 eae.gllvaeed.....geliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYek.lG 116
                     ++  ++l+a  +     g+ iG ++++ ++   ++++ +y+e+l+V+p+yrgkG+G+aL  +l + a+e+ + +i + v ++n+++i +Ye  lG
      CDO70463.1  25 TPYaHTLLAIAGtpdapGKAIGLAMYFFNYStwTAKPGVYLEDLFVDPAYRGKGVGKALFAELGKVAEEKDCARIDWSVLKWNKPSIDFYENtLG 119
                     3333444433334567899**************99*******************************************************98787 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.3e-11   3.8e-08      12      70 ..      42     115 ..      26     117 .. 0.64

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.3e-11
                     TEEEEEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEEEE.EEEE..THHHHHHHHH CS
  Acetyltransf_7  12 gkivGfialslld........aeitrlaVdpeyrgkGiGraLlea....ae.kgiile.qlel..naekaikfYe 70 
                     gk +G + +  +          +++ l+Vdp+yrgkG+G+aL +     ae k +  +  + l  n +++i+fYe
      CDO70463.1  42 GKAIGLAMYFFNYstwtakpgVYLEDLFVDPAYRGKGVGKALFAElgkvAEeKDCARIdWSVLkwN-KPSIDFYE 115
                     56666555555446666666666777*****************85455422355654444455323.3899***9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.7e-10   5.1e-07      52     103 ..      63     116 ..      39     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.7e-10
  Acetyltransf_10  52 shisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYek 103
                       +++ lfVdp+yrg+G+gkaL+ ++ + ae+++ +  + +v + +   ++fYe+
       CDO70463.1  63 VYLEDLFVDPAYRGKGVGKALFAELGKVAEEKDCARiDWSVLKWNkPSIDFYEN 116
                      3899**************************999998988888777799999985 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0035      21      56 ..      59      94 ..      42     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
  Acetyltransf_CG 21 kegvldfthTeVpeelrGkGiAkkLvkaalddaree 56
                      +  + ++  +V++++rGkG++k+L  +  + a+e+
       CDO70463.1 59 AKPGVYLEDLFVDPAYRGKGVGKALFAELGKVAEEK 94
                     4446778899***************99887777766 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   6.7e-06      0.02      18      74 ..      59     116 ..      54     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
                 E-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEE.TT-HHHHHHHHH CS
        FR47  18 rkdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvv.asNtpsirlyek 74 
                 +k+g +l  l v+p  r++G g+ l ++l k   e++   + + v   N+psi +ye 
  CDO70463.1  59 AKPGVYLEDLFVDPAYRGKGVGKALFAELGKVAEEKDCARIDWSVlKWNKPSIDFYEN 116
                 577889999********************9876666655555544156********95 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     3e-05     0.088      56     133 ..      32     115 ..       4     118 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
  Acetyltransf_3  56 waivl...kdtgviGsv.glrdleeedee..aelg.ymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvle 133
                     +ai      ++++iG +  +++++ ++ +  + l+ + ++p+++gkG+++   + l ++a ee +  r+ + + k N+ Si  +e
      CDO70463.1  32 LAIAGtpdAPGKAIGLAmYFFNYSTWTAKpgVYLEdLFVDPAYRGKGVGKALFAELGKVA-EEKDCARIDWSVLKWNKPSIDFYE 115
                     566544323333699995566999998888866663667799***********99***99.7777***************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1116.55
//
Query:       CDO70464.1  [L=177]
Description: hypothetical protein BN946_scf184569.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   81.9   0.1    4.4e-23   81.0   0.1    1.5  1  NAC       NAC domain


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1   2.4e-27   4.4e-23       1      56 [.      40      95 ..      40      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.4e-27
         NAC  1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaee 56
                +kKl+ alkkl++++ipg+eeV+++++dg+vl+f+ PkV+++  +nt++++G   +
  CDO70464.1 40 DKKLQGALKKLNVQPIPGVEEVNMFREDGNVLHFSTPKVHAAVTANTFAIYGAGHV 95
                8***************************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1278.05
//
Query:       CDO70465.1  [L=582]
Description: hypothetical protein BN946_scf184569.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-22   77.3  17.1     0.0011   19.7   2.5    9.3 11  WD40         WD domain, G-beta repeat
    4.4e-15   55.7   0.2    1.1e-06   28.8   0.0    6.0  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      0.003   18.0   0.1        3.9    7.9   0.0    3.0  3  GspH         Type II transport protein GspH
     0.0033   16.8   0.0        2.6    7.3   0.0    2.5  2  CPSF_A       CPSF A subunit region
  ------ inclusion threshold ------
      0.015   14.6   0.0       0.26   10.5   0.0    2.7  4  RAB3GAP2_N   Rab3 GTPase-activating protein regulatory subuni
       0.12   11.3   0.3        2.3    7.1   0.0    2.9  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0001       0.3       7      38 .]      52      84 ..      47      84 .. 0.77
   2 ?   -0.8   0.0       1.1   3.4e+03       9      32 ..     101     121 ..      90     124 .. 0.73
   3 ?    4.9   0.1     0.018        53       6      34 ..     139     169 ..     134     172 .. 0.79
   4 !   15.2   0.0   9.8e-06     0.029       5      38 .]     181     215 ..     177     215 .. 0.89
   5 ?   -2.6   0.0       4.3   1.3e+04      21      34 ..     317     329 ..     304     330 .. 0.68
   6 ?   -1.7   0.0       2.2   6.5e+03      10      24 ..     345     360 ..     339     370 .. 0.57
   7 ?   -3.6   0.0         6   1.8e+04      27      35 ..     392     400 ..     388     401 .. 0.64
   8 ?    4.3   0.0     0.028        85      19      37 ..     429     447 ..     409     450 .. 0.79
   9 !   17.3   0.0   2.2e-06    0.0067       5      38 .]     458     492 ..     454     492 .. 0.84
  10 !   19.7   2.5   3.7e-07    0.0011       7      38 .]     503     535 ..     496     535 .. 0.86
  11 ?    4.2   0.0      0.03        89      12      37 ..     552     576 ..     542     577 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
                EESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  7 ltGH.ss..vtslafspdgawlasGsdDgtvriWd 38
                + GH +   v      p+g + as++  gtvriWd
  CDO70465.1 52 YVGHvQQatVAR--IAPSGYYCASADTSGTVRIWD 84
                678853323444..59*****999988*******9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
                 SSSSEEEEEEETTSSEEEEEETTS CS
        WD40   9 GHssvtslafspdgawlasGsdDg 32 
                 G   v +l ++ +++ +++ + Dg
  CDO70465.1 101 GR--VKDLEWDGESKRIIAVG-DG 121
                 33..89999999999988766.65 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
                 EEESS.SSEEEEEEETTSSE.EEEEETTSEE CS
        WD40   6 tltGH.ssvtslafspdgaw.lasGsdDgtv 34 
                  + GH + +++++  +  ++  a++ dDg++
  CDO70465.1 139 DIIGHsKTINAVSIRQQRPFrAATAADDGSI 169
                 567**888****988888886567889**98 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 9.8e-06
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +t+++H ++v ++++ p+g+++as + D ++ ++d
  CDO70465.1 181 KTIKTHtKFVQDVRYAPSGDYFASVGTDYKIFVYD 215
                 68899*999*************98777*****998 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.3
                 TSSEEEEEETTSEE CS
        WD40  21 dgawlasGsdDgtv 34 
                  +++++ G+ Dg v
  CDO70465.1 317 ASTFIV-GTADGRV 329
                 456666.9889987 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 2.2
                 SSS.EEEEEEETTSSE CS
        WD40  10 Hss.vtslafspdgaw 24 
                 H   vt+l  s+dg+ 
  CDO70465.1 345 HATlVTGLGASQDGKI 360
                 5223566655555555 PP

  == domain 7  score: -3.6 bits;  conditional E-value: 6
                 EEETTSEEE CS
        WD40  27 sGsdDgtvr 35 
                 + sdD tv 
  CDO70465.1 392 AVSDDSTVF 400
                 346688875 PP

  == domain 8  score: 4.3 bits;  conditional E-value: 0.028
                 ETTSSEEEEEETTSEEEEE CS
        WD40  19 spdgawlasGsdDgtvriW 37 
                   +g+ +a G++D +vr++
  CDO70465.1 429 AAHGNVVAVGGEDMKVRLY 447
                 56788899**********6 PP

  == domain 9  score: 17.3 bits;  conditional E-value: 2.2e-06
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  tl+G  + v++lafspdg +lasG+  g++ ++d
  CDO70465.1 458 ATLDGNkGAVSALAFSPDGGLLASGDSTGKIVLYD 492
                 689999555**************995588888887 PP

  == domain 10  score: 19.7 bits;  conditional E-value: 3.7e-07
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++ Hs+ ++sla+  dg+  asGs D +v++W+
  CDO70465.1 503 WSFHSGrINSLAWTADGQHCASGSLDTHVYVWS 535
                 5679445*************************5 PP

  == domain 11  score: 4.2 bits;  conditional E-value: 0.03
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 +v+++ +  ++   as++ Dg vr W
  CDO70465.1 552 GVNAVFWLGEKEV-ASAGADGCVRRW 576
                 4888855555555.66666*****99 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.91   2.7e+03      49      89 ..      67     108 ..      58     111 .. 0.59
   2 ?    0.7   0.0      0.23   6.8e+02      33      56 ..      95     119 ..      75     128 .. 0.68
   3 !    6.6   0.0    0.0031       9.3      35      81 ..     184     230 ..     165     263 .. 0.86
   4 ?    0.7   0.0      0.22   6.7e+02      28      60 ..     338     368 ..     320     393 .. 0.69
   5 !    5.6   0.0    0.0065        19      12      71 ..     400     453 ..     393     464 .. 0.71
   6 !   28.8   0.0   3.7e-10   1.1e-06       9      75 ..     434     501 ..     421     508 .. 0.91
   7 !    8.9   0.1   0.00062       1.8      37      69 ..     506     538 ..     503     560 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.91
  ANAPC4_WD40  49 dgklLavaysdgevrllda..esgkvvhslsvksekavtclgW 89 
                  +g   a a   g+vr+ d   e++++  +++v s  +v+ l+W
   CDO70465.1  67 SGYYCASADTSGTVRIWDTlgEDQTLKGEYKVLSG-RVKDLEW 108
                  56666777777888887752233334444444444.3555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.23
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgk.lLava 56 
                  e +  +++v++L+W  + k ++av+
   CDO70465.1  95 EYKVLSGRVKDLEWDGESKrIIAVG 119
                  55667889******98765156665 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0031
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++ + v+++++ p+g  +a +  d ++ ++d ++g+++ +++ + +
   CDO70465.1 184 KTHTKFVQDVRYAPSGDYFASVGTDYKIFVYDGKTGETLGEFTDSPH 230
                  56678899*******************************99986665 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.22
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdg 60 
                  + +++   ++   v++L  ++dgk+  v+ +d 
   CDO70465.1 338 EYVEG--GAHATLVTGLGASQDGKIYSVGLDDR 368
                  44444..57788999999999***999999885 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.0065
  ANAPC4_WD40  12 latedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  ++ e++++++ R n q+v++l+ + + s +        g++ av+ +d +vrl++   + 
   CDO70465.1 400 FVLETESIEAVRSN-QKVFDLALKYNPSAI-----AAHGNVVAVGGEDMKVRLYSWDGKS 453
                  56677888888876.788888444444443.....468***************9976554 PP

  == domain 6  score: 28.8 bits;  conditional E-value: 3.7e-10
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                   +A++ ed++++++  +g+ + +  + d++++ v++La++pdg lLa + s g++ l+d+++ k+v s
   CDO70465.1 434 VVAVGGEDMKVRLYSWDGKSLSESaTLDGNKGAVSALAFSPDGGLLASGDSTGKIVLYDVKERKTVTS 501
                  789999**************999867899**********************************99975 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.00062
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++++++sLaW  dg+  a +  d++v + ++++
   CDO70465.1 506 HSGRINSLAWTADGQHCASGSLDTHVYVWSVQK 538
                  5689***********************999986 PP

>> GspH  Type II transport protein GspH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         5   1.5e+04      76      92 ..      62      82 ..      50      96 .. 0.67
   2 !    6.5   0.0    0.0036        11      44      83 ..     161     204 ..     146     226 .. 0.83
   3 !    7.9   0.0    0.0013       3.9      15      93 ..     408     491 ..     402     506 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5
                EEE-TTS....SCB--EEEEE CS
        GspH 76 itFnpsG....geltpgtltl 92
                 ++ psG     + t+gt+++
  CDO70465.1 62 ARIAPSGyycaSADTSGTVRI 82
                556677777766667777765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0036
                 CEETTTCSSEEEEEESSSSTTESSECTT--SCEEE-TTS....S CS
        GspH  44 ngtldggedvlrrgaaldggdtltgaakgtpqitFnpsG....g 83 
                 + ++d+g  ++ +g++++ ++t+++ +k  + +++ psG     
  CDO70465.1 161 ATAADDGSIIFHQGVPFKYDKTIKTHTKFVQDVRYAPSGdyfaS 204
                 566788889******************************75332 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0013
                 HHHHHSS-EE.EECTTEEEESCEES.SSCCCCEETTTCSS.....EEEEEESSSSTTESSECTT--SCEEE-TTS....SCB--EEEEEE CS
        GspH  15 eAvrrgrpvt.lcpssgwqggWrvf.vdanangtldgged.....vlrrgaaldggdtltgaakgtpqitFnpsG....geltpgtltlc 93 
                 eAvr+++ v  l         + +    a +n  + gged     +   g +l++++tl g++ +  +++F+p+G     + ++g + l+
  CDO70465.1 408 EAVRSNQKVFdLA-LK-----YNPSaIAAHGNVVAVGGEDmkvrlYSWDGKSLSESATLDGNKGAVSALAFSPDGgllaSGDSTGKIVLY 491
                 7888888887633.22.....22222223344445555552222244455555666666666999999*****99888877777888776 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0011       3.4      87     120 ..      14      47 ..       7      82 .. 0.80
   2 !    7.3   0.0   0.00086       2.6      65     160 ..     398     495 ..     380     507 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
                 EEEES----EEEETTEEEEE-SSEEEEEEE-TTS CS
      CPSF_A  87 eevkgavtalaefqGrllvgvgqkvrvydlgedk 120
                 + ++g +t l+  +++++   g++v+++dl++  
  CDO70465.1  14 TTTRGEPTKLSSSKDKIVYTNGRSVIIRDLKDAA 47 
                 6799***************************987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00086
                 EEEEEEEEE-SS--EEEEEEEEEEEES----EEEETTEEEEE-S.SEEEEEEE-TTS-EEEEEEEE-SS-EEEEEEE...TTEEEEEESSS-EEEEEE- CS
      CPSF_A  65 rilvfeiievpetnrkLklvhkeevkgavtalaefqGrllvgvg.qkvrvydlgedktLlrkafldtqlyvvslkvl...gnriivgDlmkSvtfveyd 159
                  + v+e ++  e  r+ ++v+   +k  ++a+a   + ++vg    kvr+y ++ ++ L + a ld +  +vs+ ++   g++++ gD+   +++  ++
  CDO70465.1 398 TVFVLETESI-EAVRSNQKVFDLALKYNPSAIAAHGNVVAVGGEdMKVRLYSWDGKS-LSESATLDGNKGAVSALAFspdGGLLASGDSTGKIVLYDVK 494
                 5566666665.44677788999999********99998888754269**********.*******9999555555554667799999998877777666 PP

                 S CS
      CPSF_A 160 e 160
                 e
  CDO70465.1 495 E 495
                 6 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   5.6e+02     315     336 ..      64      85 ..      55      88 .. 0.90
   2 ?   -2.2   0.0      0.63   1.9e+03     301     343 ..     363     411 ..     361     413 .. 0.67
   3 ?   -1.8   0.0      0.46   1.4e+03      73     100 ..     429     456 ..     414     462 .. 0.80
   4 ?   10.5   0.0   8.8e-05      0.26     309     342 ..     466     499 ..     451     500 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.19
  RAB3GAP2_N 315 lsPsgrlaavtDsLgRVlLlDv 336
                 ++Psg ++a +D+ g V ++D+
  CDO70465.1  64 IAPSGYYCASADTSGTVRIWDT 85 
                 79****************9997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.63
  RAB3GAP2_N 301 fgLkDskRegesivlsPsgr.......laavtDsLgRVlLlDvqagvvvR 343
                 +gL D  Re+es++  P           +av+D+   V++l+++  ++vR
  CDO70465.1 363 VGLDDRLREIESMSYTPAAFttaaqpkAVAVSDDS-TVFVLETESIEAVR 411
                 6899999*****99999843345555555566653.46666666666665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.46
  RAB3GAP2_N  73 spdwtviavGlssGylrfytengelLls 100
                   + +v+avG ++  +r+y+ +g+ L +
  CDO70465.1 429 AAHGNVVAVGGEDMKVRLYSWDGKSLSE 456
                 5667899999999999999999998865 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 8.8e-05
  RAB3GAP2_N 309 egesivlsPsgrlaavtDsLgRVlLlDvqagvvv 342
                  +  ++ sP+g l+a  Ds g+++L Dv+++  v
  CDO70465.1 466 AVSALAFSPDGGLLASGDSTGKIVLYDVKERKTV 499
                 566799***********************98766 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.13   3.8e+02      40      80 ..      73     115 ..      40     134 .. 0.64
   2 ?   -2.8   0.0      0.78   2.3e+03     193     214 ..     426     447 ..     402     460 .. 0.83
   3 ?    7.1   0.0   0.00076       2.3     189     249 ..     466     521 ..     451     547 .. 0.71
   4 ?   -3.3   0.0       1.1   3.3e+03     201     218 ..     563     580 ..     553     581 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.13
    Ge1_WD40  40 vkntgeglvrvvnketeeraL...lkglkgevldlafahvsski 80 
                 +++ ++g vr+ ++  e+++L    k l+g+v+dl++   s++i
  CDO70465.1  73 SAD-TSGTVRIWDTLGEDQTLkgeYKVLSGRVKDLEWDGESKRI 115
                 222.4667777776666666633345677777777766555544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.78
    Ge1_WD40 193 aafspdGtalatasedGevkff 214
                 +a+++ G ++a+  ed +v+++
  CDO70465.1 426 SAIAAHGNVVAVGGEDMKVRLY 447
                 5778899999999999999988 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.00076
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhke 249
                  ++  afspdG  la   + G++ ++ v   +        +W  h G+ + sl +  + ++
  CDO70465.1 466 AVSALAFSPDGGLLASGDSTGKIVLYDVKERK----TVTSRWSFHSGR-INSLAWTADGQH 521
                 577789*****************999996544....445569999997.566665555444 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.1
    Ge1_WD40 201 alatasedGevkffqvyl 218
                  +a a +dG v+ + + +
  CDO70465.1 563 EVASAGADGCVRRWSITF 580
                 6899********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4098.84
//
Query:       CDO70466.1  [L=471]
Description: hypothetical protein BN946_scf184569.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-36  123.1   0.1    8.9e-36  122.6   0.1    1.2  1  Mad3_BUB1_I  Mad3/BUB1 homology region 1
  ------ inclusion threshold ------
      0.056   12.8   0.0      0.083   12.2   0.0    1.2  1  ECH_1        Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1     1e-39   8.9e-36       3     124 .]      62     186 ..      58     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 1e-39
                  HHHHHHHHHTG....-THHHHHHHHHHHHHH-TT.-T.TT-HHHHHHHHHHHTTTS..GGGTT-HHHHHHHHHHHTTSS-HHHHHHHHHHHTTSTTBH CS
  Mad3_BUB1_I   3 rqefeeeleeaeegdDpLelwlryikwieesypq.sskesgllellerclkkfkdd..erYknDpRylklwlkyadlveepreifkflaskkiGtkla 97 
                  r+++e ++e++++  DpLe++ r++ w+ e+ypq +s esgllelle++++ ++dd   +++ D Rylklw  ya++v++p+ i+k+l+ ++iGt++a
   CDO70466.1  62 RANVEIAMEDDDDDADPLEAYSRFVYWVVENYPQgHSAESGLLELLEEATRVLRDDrgGKWRGDLRYLKLWTLYASYVDKPTIIYKYLFVNEIGTSHA 159
                  566677777756666********************999******************7779************************************** PP

                  HHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  98 lfYeewAellekkgrfkeAeevyelGi 124
                  lfYee+A  le++gr  eA+e y lGi
   CDO70466.1 160 LFYEEYAMALERAGRRVEADETYMLGI 186
                  **************************8 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.3e-06     0.083     149     199 ..     166     216 ..     142     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.3e-06
                 HHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHH CS
       ECH_1 149 AeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalr 199
                 A+ +   g++++a+e    G+  k+ p e l+ +++e  ++++ ++++   
  CDO70466.1 166 AMALERAGRRVEADETYMLGIARKATPLERLEAKHREFQKRMMASPSLPSS 216
                 66666789***********************************88776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3509.70
//
Query:       CDO70467.1  [L=611]
Description: hypothetical protein BN946_scf184569.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-39  133.8   0.1    2.2e-38  131.7   0.2    2.0  2  Pro-kuma_activ  Pro-kumamolisin, activation domain
      1e-06   28.2   2.1    1.6e-05   24.4   0.1    2.4  2  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.2   2.5e-42   2.2e-38       3     141 ..      37     175 ..      35     176 .. 0.97
   2 ?   -1.9   0.0      0.43   3.9e+03      52      79 ..     426     453 ..     417     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 2.5e-42
  Pro-kuma_activ   3 wtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqv 97 
                     ++++g+a+s++ l++ri+L qnn++ le++l dvsdpks+nyg+hl+++ev++++ap++e++++V++wL +++i+a+ +s+ ++w++++++v+++
      CDO70467.1  37 FSYVGKASSEHMLNLRIALVQNNVTGLEAALYDVSDPKSANYGHHLSKAEVEAMVAPAPETVQKVKAWLGKNNITAQTISPAGDWLSINVPVSKA 131
                     678999***************************************************************************************** PP

  Pro-kuma_activ  98 erllktsfeaYshkkgssslarcdeyslPealknyvdyihptdn 141
                     + ll+++f+ Y+ +k++++++r+  ys+Pe lk++  ++ p  +
      CDO70467.1 132 NALLNADFNEYTYDKTNTTVIRTLAYSVPETLKDHLAFVYPSVH 175
                     ************8899***********************99665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.43
  Pro-kuma_activ  52 evaelfapseeaidaVrnwLessgiaas 79 
                      + + fa    + daV+++L + g ++ 
      CDO70467.1 426 GFSNIFARPAYQDDAVTAYLDKLGTTNA 453
                     67778888888889******99998776 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.7e-09   1.6e-05     145     263 ..     355     503 ..     282     512 .. 0.75
   2 !    3.5   0.3    0.0039        35     205     261 ..     508     586 ..     505     603 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.7e-09
                   H....HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEEC.....TTTSTTCEEEEEES....................................TT CS
                   x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....................................xx RF
  Peptidase_S8 145 l....ainravnkkgvlvviSaGNngktgsslqagspvgt.....pstsknvitvgayt....................................te 196
                   +    a+ ++   +g+ + +++G  g +g ++++ ++++      ps++   ++vg+++                                      
    CDO70467.1 355 VnlcnAYGQLG-ARGTSILFASGDGGVSGPQASDACDGQEfeptfPSGCPFLTSVGSTQginpevaasfssggfsnifarpayqddavtayldklGT 450
                   24445777888.78************9999999999998777788999***********************************86666655444433 PP

                   SSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 197 gkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAllls 263
                    +   f  +     g++ pd++  G++ v +++ q+         q +sGTS++sP  a+++All +
    CDO70467.1 451 TNAGLFQAK-----GRAFPDVSTQGVQFVVDIGGQG---------QGVSGTSASSPTFASIVALLND 503
                   333444444.....56669********999999999.........789****************987 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0039
                   B-TT.......-EEEE-S-.CCCCCCCCCHHHTTTHH.....................EEEE-SHHHCHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 205 rGpssdgklkpdivapGgn.ivstwsrqsnnsaglss.....................yqsmsGTSmAsPnaagaaAll 261
                    G+s  g l+p i   G++  + ++++ sn+++g+ +                     + +++G+  As  aag+a++ 
    CDO70467.1 508 AGKSPLGFLNPLIYSSGAAaAFNDITEGSNPGCGTDGfpalegwdpvtgfgtpdfnklLALVTGSATASSGAAGNATVT 586
                   5778889999*********99**************99*********************666666666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4497.41
//
Query:       CDO70468.1  [L=589]
Description: hypothetical protein BN946_scf184569.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-32  110.8   0.1    3.8e-31  108.3   0.1    2.0  2  Pro-kuma_activ  Pro-kumamolisin, activation domain


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.1   2.1e-35   3.8e-31      16     142 .]       2     128 ..       1     128 [. 0.98
   2 ?   -0.3   0.0     0.069   1.2e+03      48      76 ..     374     402 ..     365     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 2.1e-35
  Pro-kuma_activ  16 pvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqverllktsfeaYsh 110
                     ++ ++Lk+ n + l + l dvsdp s++yg+hl+++ev +l+ap  e++++V++wL+++gi a+  s  ++++ ++++ aq+++l++++f++Y h
      CDO70468.1   2 HFVLALKPGNTSGLIKSLLDVSDPASSKYGQHLSKAEVDQLVAPPAESVQTVTSWLKNNGIDAEAYSSAGDMLRIQISPAQANTLFNANFSTYVH 96 
                     57789****************************************************************************************** PP

  Pro-kuma_activ 111 kkgssslarcdeyslPealknyvdyihptdnf 142
                     +k++++++r+ +yslP++++++  ++ pt++f
      CDO70468.1  97 EKTNTTMVRTLSYSLPADVNEHLAFVYPTTQF 128
                     ******************************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.069
  Pro-kuma_activ  48 ltaeevaelfapseeaidaVrnwLessgi 76 
                      +a  + + fa  + ++daV  +L++ g 
      CDO70468.1 374 FSAGGFSNIFARPDYQSDAVDGYLKALGD 402
                     578889999***************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4426.31
//
Query:       CDO70469.1  [L=193]
Description: hypothetical protein BN946_scf184569.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1373.32
//
Query:       CDO70470.1  [L=531]
Description: Glycoside Hydrolase Family 47 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.4e-105  353.1   0.0   3.2e-105  352.7   0.0    1.2  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.7   0.0  1.8e-109  3.2e-105       2     457 ..      51     488 ..      50     489 .. 0.88

  Alignments for each domain:
  == domain 1  score: 352.7 bits;  conditional E-value: 1.8e-109
                     HHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S..SS.EEEHHHHHHHHHHHHHHHHHHH. CS
  Glyco_hydro_47   2 fkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdt.sdskevsvFEttIRyLGGLlsaydlse 95 
                     f +sw++Yk++A++hD l+P+s+++ d  +g+ga+ vD+L tl i +      e+v++ + +idf+  +++++vs+FEt IRyL+G+lsay+ls+
      CDO70470.1  51 FLTSWNAYKQFAFPHDDLTPISESFTDGRNGWGASAVDALTTLEIFE------EIVNFTS-HIDFTIsHTTDTVSIFETSIRYLAGMLSAYELSG 138
                     899****************************************8854......4444444.4444420234569********************* PP

                     S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC.HHHTT CS
  Glyco_hydro_47  96 kkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelqektklpg 190
                     kk++ l+++A+ l+ ++  A+   +++p+ ++++++++ +     + +s++Ae+g+l+lE++rL++ Tg++++  lae  ++++++l     +pg
      CDO70470.1 139 KKYPALVKQAEILGTKMSAAWINGNKIPFGELDFNTSTPVI----Q-TSNIAEAGTLTLEWSRLAEYTGNDTFRALAEGSVRQIASLP--DPIPG 226
                     **********************************5554333....2.2456***********************************55..57899 PP

                     B-BSEEETTT--EESTEE-SSTTTHHHH.HHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTTCTS.EE-EEEGGG CS
  Glyco_hydro_47 191 lvpikidastgkfvaekislgargDSyY.EYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtsteegklspeidhLs 284
                       p+ +   + + +       a    yY EYl+K + +++++++++ +++++a+d+  ++ll+++++ +  +++++++++  ++g++++  +hL+
      CDO70470.1 227 FPPKALTRPQASLS-------A--PTYYlEYLIKYARITNTKDPIFADTWHTAVDSSIHTLLRQSTV-G--NHTYLADLD--DSGTIRHIGSHLA 307
                     99987765544444.......3..34556*******************************7766555.5..469****98..8899********* PP

                     GHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS..............S-ECTSSSSEEE-.GGG--B----HHHHHH CS
  Glyco_hydro_47 285 cFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpces.........aeecewneekkdealkriedrkyllRPEaiESl 370
                     cF++G+ ++g+kll++++ ++++ +l egc+++y++t+tg++PE+f + +++          a    +  +++ +++  + d+ y +RPE+ ES 
      CDO70470.1 308 CFMAGNWIMGGKLLNNNTIVNIGLALNEGCWNTYASTATGIGPEAFGYISSDGgftgsgdpdAGAL-AFYNRNGFYIL-PGDSDYFMRPEVLESN 400
                     **************999********************************87779999999853333.33456677777.8*************** PP

                     HHHHHHH--THHHHHHHHHHHHHHHHCEE.TTEE--ECETTSSS-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE CS
  Glyco_hydro_47 371 fylYritgdekyrevgwemfealekatkt.esgysaledVtkeepekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplk 457
                     fy++r tg+ ky e + ++++++++  kt   +++ ++dV+++++ + D meSFw+aE+lKYlYL+F+d++ +sld++VfnTeAHp+ 
      CDO70470.1 401 FYAWRSTGNIKYYERAVSAMNSFKTFLKTpTVAFAPIDDVDSTDSDFIDDMESFWFAEVLKYLYLTFDDPNRISLDNFVFNTEAHPFI 488
                     *****************************666******************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3725.92
//
Query:       CDO70471.1  [L=547]
Description: hypothetical protein BN946_scf184569.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.0   0.7          2    8.2   0.1    2.9  2  zf-CSL    CSL zinc finger
       0.21   11.6   2.5       0.21   11.6   0.9    1.7  2  FtsL      Cell division protein FtsL


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00022         2      45      57 ..     410     422 ..     393     423 .. 0.87
   2 ?    3.8   0.1    0.0052        47      40      51 ..     469     480 ..     453     482 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00022
                 EEETTSSEEEEEE CS
      zf-CSL  45 vqCssCSLwikVk 57 
                 +qC++CSL++ V+
  CDO70471.1 410 IQCTACSLTMDVR 422
                 79********996 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0052
                 ..--EEEETTSS CS
      zf-CSL  40 gaevvvqCssCS 51 
                 + e v +C+ CS
  CDO70471.1 469 RDEKVYGCRHCS 480
                 6899******** PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   2.3e-05      0.21      28      62 ..     206     241 ..     200     248 .. 0.86
   2 ?   -2.9   0.0      0.79   7.1e+03      66      82 ..     518     534 ..     517     538 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
        FtsL  28 vavvlithqtRqlvselekllserd.kLeeewrnLl 62 
                 v+v  +th+ R+l +e+e++l+er+ + e+e+++L+
  CDO70471.1 206 VMVEVTTHKQRKLHKEREHILQERKrAVEKEYSRLK 241
                 678889****************98616799**9996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.79
        FtsL  66 stlsahsrvesiAreqL 82 
                 s+l ++  ve+iA e++
  CDO70471.1 518 SHLKEKHSVEHIADEDF 534
                 67889999*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3980.34
//
Query:       CDO70472.1  [L=280]
Description: hypothetical protein BN946_scf184569.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-34  118.3   0.0    4.4e-34  118.1   0.0    1.0  1  Ribophorin_II  Oligosaccharyltransferase subunit Ribophorin I
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.34   10.5   0.0    1.7  1  DUF3778        Protein of unknown function (DUF3778)


Domain annotation for each model (and alignments):
>> Ribophorin_II  Oligosaccharyltransferase subunit Ribophorin II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.0   4.9e-38   4.4e-34     382     628 ..      29     270 ..      16     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 4.9e-38
  Ribophorin_II 382 eisvadsdqsiapkktkvsypsklkksleadslqklrlkfalkdanegkeltphQafvrLthqktkqeviFvaeadskksYkfdldlgelaeefdy 477
                     ++++ sd+s+  +++ +s++ k ++ l++  +  l l+f+++d+++gk ++phQ+f+r++ + +++e i  ++     + kf+l+++ + ++++ 
     CDO70472.1  29 RFTIFASDASQ-LRSEPISLAHKPSTPLSLGATDILKLTFQVVDKEDGKGIQPHQTFLRFYDEVSGEEGIQPVKVTPGGKAKFELNMARPPASLPP 123
                    56777788887.789999********************************************************99999********999999986 PP

  Ribophorin_II 478 lS.GtYeveLivGDavlenpilwnvadvelkfpeeeekakkkkkkslykpkpeIkHlFRepekrPpkvvsntFtaLvllPllillvlwlklgvNls 572
                          +v+L  G + +  p++ +++d+ +  ++++++++   ++  ++ +peI+H+FR + k Ppkv+s  F aL ++P ++l+ lw  +g  + 
     CDO70472.1 124 TTtNPLKVSLYLG-SFVHPPVQYELFDLIVPPSQPPAQHP---DEASFHVRPEIQHTFRPEQKLPPKVISAFFAALLAAPWVVLIGLWTHIGPQVP 215
                    550569*******.89999***********9999999877...999************************************************** PP

  Ribophorin_II 573 nfpfslsailFhlglgaillLyvlFWlkLnmftTlkyLallgiftflvGnrlLssl 628
                    ++ fs+s + F+++l+a  +L++ +W+ L + + l y a+l+i+t l+G+r+L++l
     CDO70472.1 216 HL-FSPSILPFVAALAAFEALLIWYWVALRLGQVLLYGAILAIPTALTGKRALAAL 270
                    99.**************************************************987 PP

>> DUF3778  Protein of unknown function (DUF3778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.8e-05      0.34      43      64 .]      83     104 ..      77     104 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.8e-05
     DUF3778  43 vlLRFndelrGnvlLSPVkltp 64 
                 ++LRF de+ G+    PVk tp
  CDO70472.1  83 TFLRFYDEVSGEEGIQPVKVTP 104
                 7******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2114.86
//
Query:       CDO70473.1  [L=370]
Description: hypothetical protein BN946_scf184569.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2763.26
//
Query:       CDO70474.1  [L=467]
Description: hypothetical protein BN946_scf184569.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   11.8   0.1        1.1    8.9   0.0    2.2  2  BRCA-2_OB3  BRCA2, oligonucleotide/oligosaccharide-binding, d


Domain annotation for each model (and alignments):
>> BRCA-2_OB3  BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   6.2e-05       1.1      40     127 ..     138     231 ..     129     246 .. 0.74
   2 ?    0.8   0.0     0.019   3.4e+02      73     104 ..     246     277 ..     203     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 6.2e-05
                 EEEE-TT--EEEEEESS---....SS-.-TT-E.EEEEEEEE-.....--TT-SS-EEEEEEEEEEESS-SSHHHHHHHHHHHHHHHHHHTT-H CS
  BRCA-2_OB3  40 vyLsdeesnllavkfwsdlkelaledivkpral.iaasNLqwr.....ressskiptlyagelsvfsanpkekhlqealnklkalvenqekfle 127
                  yL+d++s+ +a     dl +l++ d+v+ + l  a+  L w+     +  + +  tl + +l ++  +   +hl +a +++  + ++ ++f++
  CDO70474.1 138 YYLVDHASHTVAWLEQVDLDQLGIADVVSDSHLrFALEDLYWQhieqfPCHRLQSLTLAVDDLIAVFIHGEADHLTSANSTFPYVAKECKQFVR 231
                 59***************************9988689999**99765432333344455666777777777778887777777777766666653 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.019
                 EEEEEEEE---TT-SS-EEEEEEEEEEESS-S CS
  BRCA-2_OB3  73 iaasNLqwrressskiptlyagelsvfsanpk 104
                 +++    w   s+++++t ya e++ +s+  +
  CDO70474.1 246 VCIIARLWSVVSRHRVQTHYAQERARLSRDQR 277
                 44445557888999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3196.67
//
Query:       CDO70475.1  [L=525]
Description: hypothetical protein BN946_scf184569.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-22   77.5   0.0    2.8e-21   76.0   0.0    1.9  2  PCI         PCI domain
    2.5e-12   47.0  10.2    5.5e-08   33.1   0.1    3.6  4  Rpn3_C      Proteasome regulatory subunit C-terminal
  ------ inclusion threshold ------
      0.016   15.3   3.5       0.14   12.3   0.4    3.0  3  TPR_2       Tetratricopeptide repeat
       0.13   12.6   0.2        3.1    8.1   0.1    2.6  2  OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
        3.1    8.1   9.7         13    6.1   0.5    3.1  3  TPR_12      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.8e+04      39      56 ..     203     220 ..     184     230 .. 0.56
   2 !   76.0   0.0   7.7e-25   2.8e-21       3     102 ..     321     420 ..     319     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHHHHHH CS
         PCI  39 lesLekkvrerllrqvsk 56 
                  ++ e  ++ r lr++ +
  CDO70475.1 203 DDETEASLINRILRSYLQ 220
                 344444555555555444 PP

  == domain 2  score: 76.0 bits;  conditional E-value: 7.7e-25
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH.HHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIrdgeirakidqesgi 100
                 y +++ka+r+g+ls+f+ +l ++ +  ++ d++++l+ +L+++v+++ +r++s++ys+isl ++  +l+l++ +++E+i+ k+Irdg i+++i +e+g 
  CDO70475.1 321 YFEIVKAVRNGSLSQFQNTLSKY-AAEFEADKTYTLIVRLRQNVIKTGIRRLSLSYSRISLRDICLKLHLDSeEDAEYIVGKAIRDGVIDGRIVHENGW 418
                 7899*******************.888888******************************************9*************************9 PP

                 EE CS
         PCI 101 vv 102
                 ++
  CDO70475.1 419 ME 420
                 86 PP

>> Rpn3_C  Proteasome regulatory subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.6       3.3   1.2e+04      35      46 ..      10      21 ..       5      24 .. 0.42
   2 ?   -3.4   0.0       3.8   1.4e+04      18      26 ..     383     391 ..     381     391 .. 0.85
   3 !   19.3   0.0   3.3e-07    0.0012      10      28 ..     434     452 ..     430     453 .. 0.92
   4 !   33.1   0.1   1.5e-11   5.5e-08      28      67 .]     478     516 ..     476     516 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.3
      Rpn3_C 35 dakkkelesaee 46
                d+k++e++++ee
  CDO70475.1 10 DEKREEKKTEEE 21
                333333333333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.8
      Rpn3_C  18 FclqlHnea 26 
                  cl+lH ++
  CDO70475.1 383 ICLKLHLDS 391
                 6*****886 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 3.3e-07
      Rpn3_C  10 eaFdeRIkFclqlHneavk 28 
                 ++F +RI++cl+lHn++vk
  CDO70475.1 434 DVFARRIAYCLELHNQSVK 452
                 68****************8 PP

  == domain 4  score: 33.1 bits;  conditional E-value: 1.5e-11
      Rpn3_C  28 kAMRYpedakkkelesaeearerqqeeelakeled.edldD 67 
                  AMRYp +a++kel+ ae arer  e+elake+++ +dldD
  CDO70475.1 478 VAMRYPLNAHRKELAAAEGARER--EKELAKEIQEgGDLDD 516
                 59*********************..**********999998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         5   1.8e+04      16      24 ..     140     148 ..     137     152 .. 0.74
   2 ?    2.6   0.1     0.052   1.9e+02      10      28 ..     177     195 ..     168     198 .. 0.87
   3 ?   12.3   0.4     4e-05      0.14       1      32 [.     246     277 ..     246     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5
       TPR_2  16 dyeeAleaf 24 
                 +y +A ++ 
  CDO70475.1 140 NYPKAMKLA 148
                 899998875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.052
       TPR_2  10 ayyklgdyeeAleafekAl 28 
                  y+  gd+++A+ +f +A 
  CDO70475.1 177 TYELVGDLADARPHFLAAQ 195
                 68889**********9985 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 4e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a+++y+lG++ + + +y  A+  +++A++ +P
  CDO70475.1 246 ARYHYYLGRIKAVQLNYTAAHTNLQQAIRRAP 277
                 789**************************999 PP

>> OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00085       3.1      19      81 ..     209     273 ..     193     291 .. 0.88
   2 ?    1.3   0.0      0.11   3.8e+02      11      25 ..     374     388 ..     368     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00085
                 HHHHHHHHHHHHHTHHHHHHHHCCS..--EESS-HHHHHHHHHTT-EEEEEGGG-TTSBBSS-BE CS
  OKR_DC_1_C  19 dLcqemhdlykeakvaelqkeafsk..lpepamtpaeayeelvrgevelvpldelegriaaelvl 81 
                  L +++ + y ++++ +  +++ sk  +p++a +p++a +++  g++++v+l+  + ++ +++++
  CDO70475.1 209 SLINRILRSYLQYNLYDQADKLISKtsFPTAAGNPQHARYHYYLGRIKAVQLNYTAAHTNLQQAI 273
                 5778899999999**99999*999999**************************999988887766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
                 HHTT-BHHHHHHHHH CS
  OKR_DC_1_C  11 rYegmtlrdLcqemh 25 
                  Y++++lrd+c ++h
  CDO70475.1 374 SYSRISLRDICLKLH 388
                 7************99 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   5.8e+03      13      29 ..     135     151 ..     128     159 .. 0.58
   2 ?    6.1   1.3    0.0038        14      12      65 ..     177     228 ..     167     233 .. 0.87
   3 ?    6.1   0.5    0.0037        13      41      75 ..     242     276 ..     238     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
      TPR_12  13 lrrlgrydeAlelleka 29 
                 l+ + +y +A +l ++ 
  CDO70475.1 135 LTSQANYPKAMKLAHET 151
                 45555555555555554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0038
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                 ++   g++++A+ ++ +a + a     +d + +a+  + + r y++ + y++A 
  CDO70475.1 177 TYELVGDLADARPHFLAAQRTAAL--RHDDETEASLINRILRSYLQYNLYDQAD 228
                 57788*************999954..588888*******************996 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0037
      TPR_12  41 hpltattlrnLgrlyr.algryeeAlelleealaia 75 
                 +p+ a++ + Lgr+   +l +y +A+  l++a+++a
  CDO70475.1 242 NPQHARYHYYLGRIKAvQL-NYTAAHTNLQQAIRRA 276
                 67889*********75388.************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3621.37
//
Query:       CDO70476.1  [L=529]
Description: hypothetical protein BN946_scf184569.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00022   21.2   3.0     0.0035   17.4   0.1    2.6  2  WW             WW domain
     0.0039   17.0   0.3      0.062   13.0   0.3    2.2  1  Cation_efflux  Cation efflux family
  ------ inclusion threshold ------
      0.076   13.1   0.1      0.076   13.1   0.1    2.0  2  PgaD           PgaD-like protein


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   5.8e-07    0.0035       1      21 [.      32      51 ..      32      54 .. 0.92
   2 ?    3.3   0.6     0.014        86      16      25 ..     111     120 ..     110     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-07
                X-TTEEEEE-TTTT-EEEEET CS
          WW  1 LPpGWeeqwdpdsGrvYYyNh 21
                +P++W++++ p+ Gr Y+y++
  CDO70476.1 32 VPADWVACVHPE-GRLYFYHP 51
                599*********.******97 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.014
                 EEEEETTT-- CS
          WW  16 vYYyNheTge 25 
                 +YY++h++++
  CDO70476.1 111 YYYVDHSNRT 120
                 9*****9986 PP

>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3     1e-05     0.062      38     156 ..     352     511 ..     310     514 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
  Cation_efflux  38 lvsllllllalk................lsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikegereihaglalvvalvslvvn 117
                    + s ll+ll ++                ls++   ++ + G++ l  +++l  +ll++g+++fll  +++ + + +++ i++  +++++++ lvv 
     CDO70476.1 352 VGSILLGLLLIRqhrvksketadeawryLSSR---KHPTLGLETLAIIYSLPYALLMWGMVTFLLAFSFECFANADKAGIYSTATAWIIVAILVVW 444
                    45555556666655555555555544334433...56789*****************************999955555555555555554444443 PP

  Cation_efflux 118 lalllilrragrkl.............................rsaalkaaalhvlgDaltslgvlvs 156
                     + +  + ++ +++                             rs + kaaa+ +l  +++  + l+s
     CDO70476.1 445 TV-ITGWEGGETSMweplrrwrsrvfpesedeggeegggstfaRSLSEKAAAKTWLAKVFGQKACLFS 511
                    33.22222222333668888888888888888888888888888888888888888888887777766 PP

>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.3e-05     0.076      12     105 ..     283     372 ..     275     384 .. 0.69
   2 ?   -4.4   0.9         3   1.8e+04      21      92 ..     431     444 ..     424     451 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
        PgaD  12 skrlldsilTllaWagwiyL....fvpllvllawllglelfeaeillglfseasasevegslseletlrlYalilvviavlLilWaklnrvrfkakkr 105
                 +k ++d+i+ +  W g+i      + ++++++       l +a++    f ++ +++  +s  +  +++ Y+ i++ ++ +L+++  ++++r k+k+ 
  CDO70476.1 283 EKIWIDNIIAIQPWSGFIGKlqneWQEFVLYATV-----LLNANVA---FLAIPSVDDGSSHLTPPQISSYLSIVASVGSILLGLLLIRQHRVKSKET 372
                 5677888888888888875313335554444222.....2222222...456666677777777789***************************9973 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 3
        PgaD  21 TllaWagwiyLfvpllvllawllglelfeaeillglfseasasevegslseletlrlYalilvviavlLilW 92 
                 T+ aW++                                                            +L++W
  CDO70476.1 431 TATAWII----------------------------------------------------------VAILVVW 444
                 4444443..........................................................3344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3758.40
//
Query:       CDO70477.1  [L=272]
Description: hypothetical protein BN946_scf184569.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-36  126.8   0.0    1.5e-36  126.6   0.0    1.0  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   8.5e-41   1.5e-36       1     203 [.      15     270 ..      15     272 .] 0.81

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 8.5e-41
                    EEEEEEECSTTSSTCC......-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEE CS
  Peptidase_C14   1 kkAliIginnYpgtka......eLrGcanDaermaklLvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGt 83 
                    kkAl+Igi  Y +t a      eL+G+++D  +++k+L++ +g++ e+ilil+dd       pt++ni+ a+++lvk+a+  pgD +v+ +sGHG+
     CDO70477.1  15 KKALLIGIQ-YSSTLArhnprfELKGAHKDPWALRKVLIDLFGYKDEDILILIDDqseqydmPTRENILAAMRDLVKDAQ--PGDRFVFSFSGHGG 107
                    89*******.**888888999***********************************************************..************** PP

                    T....EEECTTC........SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSS........................ CS
  Peptidase_C14  84 rvpaecivpvdv........nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnk........................ 146
                    +vp+e    +d         ++ i+ddd+r+++ +++lps+a  ++++++d+C+ g++ d +    ++ ++                         
     CDO70477.1 108 QVPNEDGTEDDGwdentemfENYIKDDDVRSIL-VSNLPSGA--HLSMVFDCCHsGTASDLPSVFTDGLSSPaspltsfspklpwkshypsidaed 200
                    *****777777777788888*************.9*******..**********999995555555555555555555666666666666666666 PP

                    ..........HCCCHCHHHHHHCSHHCE.EECTTT....SEEEEESSSTTBSCEEETTTEEHHHHHHHHHHH CS
  Peptidase_C14 147 ..........feedssskekkpekqsls.klpsea....dvlllsgcqddqtSadgsengsaftqalqkvle 203
                                + ++ ++k   ++ +s ++p  +     v++ s+c d+q  + g++ g+ f++a++++l+
     CDO70477.1 201 igfsqtfvddAVQLATGWMKGMHRRTRSySMPP-EspgpHVTSWSACMDNQSTFGGRSGGF-FIKAFTEALR 270
                    666666444433445566665554444413333.3589999*****************998.8888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2111.58
//
Query:       CDO70478.1  [L=126]
Description: hypothetical protein BN946_scf184569.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 883.62
//
Query:       CDO70479.1  [L=815]
Description: hypothetical protein BN946_scf184569.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-32  111.6   0.0      3e-32  110.9   0.0    1.4  1  SPA       Stabilization of polarity axis
    4.7e-19   69.2   0.0    1.7e-16   60.9   0.0    2.3  2  Afi1      Docking domain of Afi1 for Arf3 in vesicle traffick
    3.2e-05   22.8   0.0    0.00097   17.9   0.0    2.8  4  Avl9      Transport protein Avl9


Domain annotation for each model (and alignments):
>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   5.1e-36     3e-32       2     114 .]     392     503 ..     391     503 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 5.1e-36
         SPA   2 tsllkllekftpeiillinalltskriivlstkasadevsefvLalsnlispagdvlrgfknnsfPyvdlseldalekvpgyIvGvtNPiFeeqeqlWD 100
                 +++l++++ +tp++i+l+nal+t krii+l++++ a++vs++vLa+++l+s++g vlrgf +++fPy++l + +++e +pgyI+GvtNPiFe   + WD
  CDO70479.1 392 HPHLHTNGALTPPVIVLFNALITGKRIIFLGHHKLAENVSNHVLAACALGSGCGVVLRGFIKRAFPYATLINREEWETIPGYIAGVTNPIFETAGS-WD 489
                 789****************************************************************************************87777.** PP

         SPA 101 vlydldsgsvklsk 114
                 +l+d++++++ +sk
  CDO70479.1 490 LLCDIGTNRMVVSK 503
                 ********999875 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   2.8e-20   1.7e-16       1      56 [.      10      63 ..      10      70 .. 0.95
   2 !    6.1   0.0    0.0024        14     106     132 ..      76     103 ..      65     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.8e-20
        Afi1  1 yilvAeFdidkGpvikhqYPkaipgdetlseLAelmlPdqvhkrkqDitvFfLykd 56
                ++lvA+Fdid+G  ++ q+P+++  de+l  LA+lmlPd++++++ D+tvFfL ++
  CDO70479.1 10 FVLVADFDIDRGAQLTYQFPQPLGTDEGL--LANLMLPDGAERQPTDWTVFFLNQT 63
                69***************************..**********************875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0024
        Afi1 106 kdeeek.agegepllyvlnvvntkkDkt 132
                 +de  + a+eg ++ly +n+v+tk Dkt
  CDO70479.1  76 SDEGRSaAEEGSNMLYGINLVRTKLDKT 103
                 4555555889****************98 PP

>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.6e-07   0.00097       4     147 ..      11     155 ..       8     184 .. 0.84
   2 ?   -1.9   0.0      0.17     1e+03     178     204 ..     405     433 ..     403     444 .. 0.74
   3 ?    0.8   0.0     0.026   1.5e+02     269     318 ..     457     502 ..     445     514 .. 0.80
   4 ?   -2.9   0.0      0.36   2.1e+03     360     374 ..     578     592 ..     569     595 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.6e-07
        Avl9   4 ilvvgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfeedfvyFtleede.................seteeektlfgiscvrQikaee 85 
                 +lv +F   +G ++ + +p      +   ++  lL  l lpDG+     d+++F l+++                     e ++ l+gi  vr +    
  CDO70479.1  11 VLVADFDIDRGAQLTYQFP------QPLGTDEGLLANLMLPDGAERQPTDWTVFFLNQTPfntikpplaiesdegrsAAEEGSNMLYGINLVRTK---- 99 
                 8999***************......4445555789999******************97769**************9878888999*****99954.... PP

        Avl9  86 lkartadvtRstvQKsvvvlsklpifgkikekLslitkayfeqkdfsnteilkelyeqlnae 147
                     ++   R  + K++ ++++ p  + +k  L l+ + yf++     ++ l +l++++na+
  CDO70479.1 100 ---LDKTARRGAIVKAMAIVTRYPFVQIFKPVLLLALDDYFMNPS---QDCLARLFDAVNAM 155
                 ...344567999*****************************9875...55666777766654 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.17
        Avl9 178 vLvlfKlllLekkvlvyg..spveklcel 204
                 v+vlf +l+  k++++ g  +  e++++ 
  CDO70479.1 405 VIVLFNALITGKRIIFLGhhKLAENVSNH 433
                 689************99853344555555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.026
        Avl9 269 PYlpLqqldlLsdksvksflvGtsNsLllqqkelladvlvdvdeaeieik 318
                 PY +L   ++   +++ ++++G +N +++   +   d+l d+ ++++ ++
  CDO70479.1 457 PYATLINREEW--ETIPGYIAGVTNPIFETAGSW--DLLCDIGTNRMVVS 502
                 67766666666..7899***********987766..99999998887665 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.36
        Avl9 360 sddwiRaqfeeYlva 374
                 s++++Ra+f eY++ 
  CDO70479.1 578 SEAHVRAKFTEYVLR 592
                 899*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5373.29
//
Query:       CDO70480.1  [L=661]
Description: hypothetical protein BN946_scf184569.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   12.4   0.0       0.13   11.6   0.0    1.2  1  Cas_Csy2  CRISPR-associated protein (Cas_Csy2)


Domain annotation for each model (and alignments):
>> Cas_Csy2  CRISPR-associated protein (Cas_Csy2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.1e-06      0.13     195     278 ..     429     511 ..     423     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.1e-06
    Cas_Csy2 195 alLdlaalnhtaekdeege.kveWeakkkkergwlvpipvGYqalsplyeagevknardaetphrfvEsvyslGewvsphrlqkl 278
                  +Ld  ++nh++ ++  +e + +W+a+ ++ +  +    vG+ a++   + ge+  +r a     ++ ++ ++G+ +    l ++
  CDO70480.1 429 MWLD-EKINHQPWRKFIHElQEDWTASITP-STVILGANVGFLAIQSVDQGGEMVPHRSAGQIISYISTLLTIGNIIACTVLARQ 511
                 6899.899999998877666999*977775.899*****************************************9988877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 4234.39
//
Query:       CDO70481.1  [L=1167]
Description: hypothetical protein BN946_scf184569.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-139  465.6   0.0   5.4e-139  464.1   0.0    1.7  2  Coatomer_WDAD  Coatomer WD associated region
   1.4e-113  379.7   0.0     2e-113  379.2   0.0    1.1  1  COPI_C         Coatomer (COPI) alpha subunit C-terminus
    4.6e-41  138.0  12.3      6e-08   33.2   0.2    7.4  8  WD40           WD domain, G-beta repeat
    8.7e-09   35.6   0.3    0.00066   19.9   0.0    5.3  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0049   17.6   2.8        2.9    8.9   0.3    4.5  3  TPR_14         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   13.4   3.0        1.3    7.5   0.0    3.2  3  Nup160         Nucleoporin Nup120/160
      0.074   13.2   0.4         23    5.4   0.1    3.1  2  TPR_2          Tetratricopeptide repeat
      0.082   12.8   0.2        0.3   10.9   0.1    2.0  2  Clathrin       Region in Clathrin and VPS


Domain annotation for each model (and alignments):
>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.52   1.2e+03     150     175 ..      82     107 ..      78     125 .. 0.76
   2 !  464.1   0.0  2.4e-142  5.4e-139       2     444 ..     293     722 ..     292     723 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.52
                    XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 150 Vvwsddgelvalvskdtvyilsynle 175
                    ++ s +++ +a+++ ++ y++s +  
     CDO70481.1  82 IWNSTSRNCIAILTGHSHYVMSAQFH 107
                    44466799*************98877 PP

  == domain 2  score: 464.1 bits;  conditional E-value: 2.4e-142
                    XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD   2 sevrqanikkkeelkdgellslqlkelgsieiypqslshnpngrfvlV...cgdgeyiiyt.........alalrnkaygkgldfvwvssnrfavl 85 
                    + vr+++i++      +++  l+++++gs ++ p++ls+np++r+vl+    ++g y++ +         + + ++ ++g+g+ +++v++nrfavl
     CDO70481.1 293 KYVRSYDINTG-----TDVGLLSVRKFGSPYVPPRTLSFNPAERAVLLtisSDNGLYELSSlpkdaigevKDSSTDGKRGSGQAAIFVARNRFAVL 383
                    67999*****9.....99******************************9988999999999********99999********************** PP

                    XX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
  Coatomer_WDAD  86 es.sksvkifknfkekktksikleyqvdkifg...GalLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyilsynleav 177
                    ++ ++ +++ ++++++++ksik+++q+++if+    +l++ ++++ v++YD++q+k++++i+  +vk+Vvws dg+lval+sk+t++i+++n    
     CDO70481.1 384 NKtTQLIEV-RDLSNSVVKSIKPPVQTNEIFYggtASLILSSPSS-VVLYDIQQQKTLAEITTPPVKYVVWSADGSLVALLSKHTITIANKNFS-- 475
                    **8888999.**********************8755666666666.************************************************.. PP

                    ...........XXXXXXX.XXXXXXXXXXXX.XXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 178 eeedeeegvedafevlhelsesiksgaWvgd.vfiYttsnnrlky.lvngevgiikhldktlyilgykgkenklylldkdgnvvsleidlselefk 271
                               + +++he +++iksgaW+++ vf+Y+t n ++ky l +g++g+i +ld+++y++++kg  + +++ld++++ ++++id++e++fk
     CDO70481.1 476 -----------QNTLIHE-TIRIKSGAWDDTgVFVYSTLN-HIKYcLAQGDHGVICTLDNPVYLTRVKG--KIVHCLDRSARPRTITIDPTEYRFK 556
                    ...........99*****.*********************.****************************..************************* PP

                    XXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXX-GGGSS-HHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHH CS
  Coatomer_WDAD 272 tavlrkdleevlkiiaasnllpeipkeegqkiirfLekkgypelAlqlvqDpetkFdLAlelgnLelAlelakelddeekWkkLgdaAlsqgnikl 367
                    +a+lr++ ee+l ii++snll       gq+ii++L++kg+pe+Al++vqD++t+FdLA+e+gnL++Ale+a+  d++++W++L++ Al+qgn+k+
     CDO70481.1 557 LALLRNNHEEMLYIIRTSNLL-------GQSIIAYLQQKGFPEIALHFVQDKNTRFDLAIECGNLDVALETAQAIDRPDCWERLAQQALKQGNHKI 645
                    *********************.......******************************************************************** PP

                    HHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT CS
  Coatomer_WDAD 368 aeeayqkakdfdkLllLylstgnkekLkkLakiaekkgdyniafqaalllgdvekcvdlLiksgrlpeAalfAktyg 444
                    +e+ayq++k+fd+L++Lyl++g ++kL k++kia ++gd +++f++al+ gdv+ ++ +L ++g +++A+l+Akt+g
     CDO70481.1 646 VEKAYQRTKNFDRLSFLYLASGSTDKLTKMQKIADARGDPMSRFHNALYAGDVQGRIAVLRDVGMHSLAYLTAKTNG 722
                    ***************************************************************************98 PP

>> COPI_C  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.2   0.0  8.8e-117    2e-113      36     395 ..     804    1162 ..     773    1166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 379.2 bits;  conditional E-value: 8.8e-117
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHHHHHHH---HHHHHHHT-HHHHHHHHHHHS--- CS
      COPI_C   36 dldleekkeeeededeeeeedeeeggWdv.edlelpadldaeaaasaaaesevfvaPtkgvpvsqiWvnksqlaadhvaaGsFetAmrLLnrqvGvv 131 
                  +  l++ ++eee  +   e   eeg+Wd+  d e +a  +++++++ +++ +  +  t+gv++++ W+++s +aadhvaaGsF+tAm+LL+rq Gvv
  CDO70481.1  804 SAALDDWAKEEEGGE---EIAAEEGAWDLdADAE-EAAEEVQEEEAIEEQPDLGAGATPGVSETELWTRNSPFAADHVAAGSFDTAMQLLHRQFGVV 896 
                  334444333333333...445689****953333.3333344444444457999999**************************************** PP

                  --GGGHHHHHHHHHHS-EEE-SSTTS--EEE--BTTTTT--SSS--B-----HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGG----SHHHH CS
      COPI_C  132 nfaplkslFlelyaasrtslealpslpsllvalernwkeaaaknglPalvlklsqleerLkaaYklttegkfseavekfrsillsipllvvdskqev 228 
                  nf+ lks+Fl++y +s+++l+ ++slp+l+++l+rn +e++++  lP+ v +l ++ ++L ++++++   k++ea + frs+l +++l+ ++s +++
  CDO70481.1  897 NFSQLKSTFLSVYRSSHVYLSPMASLPPLQLHLRRNPEESSPSRVLPVAVRTLPSIRAELSEGFRAVSGNKLPEAQTVFRSVLRALLLVPISSDNDA 993 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHS-SS..HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH---HHHHHHHHHH CS
      COPI_C  229 devkeLieicreYivgLrmEikRkelkks..ddqkrqaElaAYfthcnlqpvHliLaLrsAlnlffKlknfktaasfarrLLelgpkeevaqqarkv 323 
                  +e ++L+++ reY++g ++Ei+R+++ ++  d+ +r+ ElaAYfthc+lqp+Hl++aLrsA+ +f K++n +taa+farrLL+l+p++++ +qar+ 
  CDO70481.1  994 KEWRDLVTLSREYLLGVTLEIERRRVAQEnsDNIRRSLELAAYFTHCKLQPAHLQIALRSAIGVFAKANNHATAAKFARRLLDLNPDPKIVAQARQR 1090
                  **************************98887788*************************************************************** PP

                  HHHHHHS--BSS--S--SSS---BBTTT--B--TTS--EE-TTT--EE-GGGTTSB-TTTSSSBSS------ CS
      COPI_C  324 lqaceknptdevelnYdernPFvvcaatfvPiYrgkkevkcplcgasyvpelkgkvckvcevaeiGkdaiGL 395 
                  ++a ++np+++ve++Yde   F++caa+++PiY+g+++v+cp++ a y p++kg++ +++e++eiG++++GL
  CDO70481.1 1091 IAAGDRNPRNAVEIDYDEFTEFEICAASYTPIYKGSPAVRCPYTDAAYLPQYKGQLDPLTELTEIGASSSGL 1162
                  ***********************************************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.1e-09   9.3e-06       6      38 .]       7      40 ..       2      40 .. 0.91
   2 !   33.2   0.2   2.7e-11     6e-08       2      38 .]      47      84 ..      46      84 .. 0.96
   3 !   31.0   0.1   1.3e-10     3e-07       2      38 .]      89     126 ..      88     126 .. 0.95
   4 !   19.8   0.0   4.8e-07    0.0011       5      37 ..     153     186 ..     149     187 .. 0.90
   5 !   28.0   0.3   1.2e-09   2.7e-06       4      38 .]     196     231 ..     193     231 .. 0.89
   6 ?    0.9   0.0      0.44   9.8e+02      13      34 ..     250     269 ..     236     271 .. 0.66
   7 ?   -3.5   0.0         8   1.8e+04      16      26 ..     450     460 ..     439     467 .. 0.76
   8 ?   -3.0   0.0       7.3   1.6e+04      24      32 ..     663     671 ..     659     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.1e-09
                EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                 ++ H ++v+++a +p+ a+la+G+dD ++++Wd
  CDO70481.1  7 RFEEHeGPVRAVAIHPSRALLATGGDDYKIKVWD 40
                5889*999*************************9 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 2.7e-11
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                +cl tl GH + v+ ++f+++ +w++s+sdD+t+riW+
  CDO70481.1 47 RCLFTLHGHlDYVRTVQFHHEMPWILSASDDQTIRIWN 84
                79*******999*************************8 PP

  == domain 3  score: 31.0 bits;  conditional E-value: 1.3e-10
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +c+ +ltGHs+ v s +f+p  ++++s+s D+tvr+Wd
  CDO70481.1  89 NCIAILTGHSHyVMSAQFHPKEDLIVSASQDQTVRVWD 126
                 8********778*************************9 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 4.8e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++l+GH  +v+  af+p  ++++s+ dD+ ++iW
  CDO70481.1 153 YVLEGHdRGVNWAAFHPTLPLIVSAADDRQIKIW 186
                 6799**666****************99******* PP

  == domain 5  score: 28.0 bits;  conditional E-value: 1.2e-09
                 EEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssv.tslafspdgawlasGsdDgtvriWd 38 
                 + +++GH ++v t+l f+p + +++s+++D+tvr+Wd
  CDO70481.1 196 VDSCRGHfNNVsTAL-FHPKHELIVSCGEDKTVRVWD 231
                 6689***999*6666.********************9 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.44
                 EEEEEEETTSSEEEEEETTSEE CS
        WD40  13 vtslafspdgawlasGsdDgtv 34 
                 v +   +p+ +++a+G+d+g +
  CDO70481.1 250 VLA--AHPELNLFAAGHDNGLI 269
                 444..499999******66655 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 8
                 EEEETTSSEEE CS
        WD40  16 lafspdgawla 26 
                 + +s dg+++a
  CDO70481.1 450 VVWSADGSLVA 460
                 56999999974 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 7.3
                 EEEEEETTS CS
        WD40  24 wlasGsdDg 32 
                 +lasGs D+
  CDO70481.1 663 YLASGSTDK 671
                 799**9997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.11   2.6e+02      36      68 ..      10      42 ..       5      56 .. 0.87
   2 ?    4.0   0.0     0.027        61       9      81 ..      26      99 ..      21     104 .. 0.74
   3 ?    1.6   0.0      0.16   3.5e+02       2      22 ..     105     125 ..     104     131 .. 0.70
   4 !   19.9   0.0     3e-07   0.00066       2      81 ..     166     246 ..     165     262 .. 0.91
   5 ?    0.1   0.0      0.47     1e+03      38      59 ..     444     465 ..     421     489 .. 0.67
   6 ?   -2.9   0.0       3.9   8.6e+03      12      34 ..     517     539 ..     511     547 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrlldae 68
                 ++++ vr++a +p+  lLa + +d ++++ d+ 
   CDO70481.1 10 EHEGPVRAVAIHPSRALLATGGDDYKIKVWDIR 42
                 67899***********************99986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.027
  ANAPC4_WD40  9 LiAlatedgellv..fR.lngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 L+A + +d ++ v   R +n + ++tl  +++   vr ++++++   +  a +d ++r+ ++ s +++  l+ +s+
   CDO70481.1 26 LLATGGDDYKIKVwdIRpTNRRCLFTL--HGHLDYVRTVQFHHEMPWILSASDDQTIRIWNSTSRNCIAILTGHSH 99
                 555555555554422231366667777..778889******************************99988877665 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.16
  ANAPC4_WD40   2 swcptmDLiAlatedgellvf 22 
                  ++ p+ DLi  a++d+ ++v 
   CDO70481.1 105 QFHPKEDLIVSASQDQTVRVW 125
                  566788888888888777764 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 3e-07
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++ pt  Li  a +d ++ + R++  + w++ +  ++ ++v+   ++p+ +l++   +d +vr+ d  + + v++++ +++
   CDO70481.1 166 AFHPTLPLIVSAADDRQIKIWRMSETKAWEVdSCRGHFNNVSTALFHPKHELIVSCGEDKTVRVWDLTKRTAVQTFRREHD 246
                  5789999************************545567799**********************************9988776 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.47
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysd 59 
                     v+ + W+ dg+l a   + 
   CDO70481.1 444 TPPVKYVVWSADGSLVALLSKH 465
                  4467788888888877765443 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3.9
  ANAPC4_WD40  12 latedgellvfRlngqrvwtlee 34 
                  + t d+ +++ R++g+ v  l++
   CDO70481.1 517 ICTLDNPVYLTRVKGKIVHCLDR 539
                  56778889999999988876644 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.19   4.2e+02       1      26 [.     627     652 ..     627     653 .. 0.91
   2 ?    2.7   0.1      0.13     3e+02      11      26 ..     876     891 ..     873     894 .. 0.87
   3 !    8.9   0.3    0.0013       2.9       6      35 ..    1053    1082 ..    1049    1093 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.19
      TPR_14   1 peallalaeallalGdpdeAiallrr 26 
                 p+ + +la+  l +G+++  +++++r
  CDO70481.1 627 PDCWERLAQQALKQGNHKIVEKAYQR 652
                 577999************99999987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
      TPR_14  11 llalGdpdeAiallrr 26 
                 + a+G +d+A++ll+r
  CDO70481.1 876 HVAAGSFDTAMQLLHR 891
                 689***********98 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0013
      TPR_14    6 alaeallalGdpdeAiallrralalaPdda 35  
                   +  +++ + ++++A++ +rr+l+l+Pd+ 
  CDO70481.1 1053 SAIGVFAKANNHATAAKFARRLLDLNPDPK 1082
                  56678999*******************984 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.032        72     233     254 ..      71      92 ..      58      97 .. 0.87
   2 ?    7.5   0.0   0.00059       1.3     221     250 ..     101     130 ..      94     193 .. 0.85
   3 ?    2.7   0.1     0.017        38     220     255 ..     205     240 ..     186     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.032
                 EEEEETT-EEEEEETTTTEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkcla 254
                 ++++s d+++r+Wn ++  c+a
  CDO70481.1  71 ILSASDDQTIRIWNSTSRNCIA 92 
                 8999************999997 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00059
                 EET.....TTTEEEEEETT-EEEEEETTTT CS
      Nup160 221 vavavveigqtylfalsrdgkLrvWnlltg 250
                 v++a  + ++++++++s+d+++rvW+++ +
  CDO70481.1 101 VMSAQFHPKEDLIVSASQDQTVRVWDISGL 130
                 5566666699****************9865 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.017
                 EEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 220 dvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                 +v++a  + +  ++++   d+++rvW+l+  + + t
  CDO70481.1 205 NVSTALFHPKHELIVSCGEDKTVRVWDLTKRTAVQT 240
                 5666666667888899999*********99888877 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.019        42       1      26 [.     627     652 ..     627     656 .. 0.91
   2 ?    5.4   0.1      0.01        23      12      33 ..    1059    1080 ..    1057    1081 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.019
       TPR_2   1 aealynlGlayyklgdyeeAleafek 26 
                 ++++ +l++ ++k+g+++  ++a+++
  CDO70481.1 627 PDCWERLAQQALKQGNHKIVEKAYQR 652
                 578**************999999987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
       TPR_2   12 yklgdyeeAleafekAleldPn 33  
                  +k+++++ A+++ ++ l l+P+
  CDO70481.1 1059 AKANNHATAAKFARRLLDLNPD 1080
                  6899*****************8 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014       0.3      62     140 ..     567     642 ..     554     645 .. 0.83
   2 ?   -2.9   0.0       2.6   5.7e+03     115     140 ..    1054    1079 ..    1050    1087 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                 HHTTSS---S-TTHHHHHHHT-SSHHHHHH.HHHTTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXS CS
    Clathrin  62 eeflkknnnydlekvaklcekadlyeeavi.lykkinefkkaisllkklkdfddaieyaakvsnpelwekllealldkkp 140
                 + ++ +++n   ++++ ++++++  e a+  + +k+ +f+ ai++    +++d a+e+a+ ++ p+ we+l++  l++++
  CDO70481.1 567 MLYIIRTSNLLGQSIIAYLQQKGFPEIALHfVQDKNTRFDLAIEC----GNLDVALETAQAIDRPDCWERLAQQALKQGN 642
                 44666777888999***********88776455669999999997....99*********************99998876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
                  HHHTTTTTXXSHHHHHHHHHHHSSXS CS
    Clathrin  115 aieyaakvsnpelwekllealldkkp 140 
                  ai ++ak++n ++++k ++ lld +p
  CDO70481.1 1054 AIGVFAKANNHATAAKFARRLLDLNP 1079
                  55556666666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.51
# Mc/sec: 6946.92
//
Query:       CDO70482.1  [L=440]
Description: hypothetical protein BN946_scf184569.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-13   50.1   0.0    4.7e-13   49.3   0.0    1.4  1  XPG_I       XPG I-region
     0.0084   16.7   0.0      0.021   15.4   0.0    1.6  1  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   5.2e-17   4.7e-13       2      94 .]     246     330 ..     245     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 5.2e-17
                 HHT--EEE..-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   2 lmgipyvv..ApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 +mgip+v+   p+EAEA +a ++ +g +d+v+seD+D+l++ ap  +rn+   +  +       ++  i+ ++v++ l+l+r++ id+a+llg+D
  CDO70482.1 246 AMGIPCVEpsGPYEAEALAASIVLNGFADYVASEDTDVLIYDAPL-VRNVA--TGAA-------PLVLISGSDVRTVLQLDRARYIDFALLLGTD 330
                 79*****74479*******************************95.68887..4333.......68999999**********************9 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.3e-06     0.021       5      72 ..     319     381 ..     316     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-06
  5_3_exonuc   5 qiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeearlskk 72 
                 ++id++ L G   D  + ++ +G+  A k ++e+gs+e +le+  +      +  + e+ e++ l+++
  CDO70482.1 319 RYIDFALLLGT--DFSQRIKNVGPTRALKFIREHGSIERVLEHERQYP---PRIPIDEYLEQIALARS 381
                 67888888884..5567899**********************876643...46666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3058.28
//
Query:       CDO70483.1  [L=921]
Description: hypothetical protein BN946_scf184569.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-15   55.3  15.1    8.6e-11   41.9   8.0    3.1  3  LIM       LIM domain
  ------ inclusion threshold ------
        1.1    9.0   9.7          8    6.1   0.1    3.6  3  zf_UBZ    Ubiquitin-Binding Zinc Finger


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.4e-06     0.021      20      37 ..     794     811 ..     787     816 .. 0.87
   2 ?    1.3   0.1     0.044     4e+02      41      56 ..     839     854 ..     833     856 .. 0.78
   3 !   41.9   8.0   9.6e-15   8.6e-11       1      55 [.     860     914 ..     860     916 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-06
                 EEEETTTSB-TTT-SB-C CS
         LIM  20 kvwHeeCFtCsdCqkeLk 37 
                 +++He++F C++C++++ 
  CDO70483.1 794 RTYHEQHFFCAECGDPFL 811
                 68************9985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.044
                 CEEETTEEEEHHHHHH CS
         LIM  41 fyekdgklyCkkdylk 56 
                 f++ +g +yC++++++
  CDO70483.1 839 FTVYKGYPYCEACHVR 854
                 66778899*****987 PP

  == domain 3  score: 41.9 bits;  conditional E-value: 9.6e-15
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdyl 55 
                 C++C+k+i++    ++al+ +w  eCFtC++C+k+++   f+++dgk++C++++ 
  CDO70483.1 860 CQKCKKSIRHGTQAVEALGGKWCWECFTCASCDKPFDVPAFFQRDGKPFCEHCFS 914
                 *********8888889*************************************95 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0009         8       2      15 ..     800     813 ..     799     816 .. 0.85
   2 ?    2.8   0.4      0.01        92       4      12 ..     859     867 ..     857     872 .. 0.88
   3 ?    4.1   0.7    0.0039        35       1      15 [.     884     898 ..     884     900 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0009
      zf_UBZ   2 tylCerCgkeipes 15 
                 +++C++Cg +++++
  CDO70483.1 800 HFFCAECGDPFLPP 813
                 89******999876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.01
      zf_UBZ   4 lCerCgkei 12 
                  C++C+k+i
  CDO70483.1 859 KCQKCKKSI 867
                 5******99 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0039
      zf_UBZ   1 dtylCerCgkeipes 15 
                 ++++C+ C+k++ ++
  CDO70483.1 884 ECFTCASCDKPFDVP 898
                 589********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.54
# Mc/sec: 5169.21
//
Query:       CDO70484.1  [L=426]
Description: hypothetical protein BN946_scf184569.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-50  170.2   0.0    1.4e-49  169.1   0.0    1.4  1  p450       Cytochrome P450
  ------ inclusion threshold ------
      0.061   13.8   2.1         35    4.9   0.1    3.3  3  TetR_C_28  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0   1.6e-53   1.4e-49     138     447 ..      19     390 ..       3     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 1.6e-53
                 EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.....HHHHHHHHHHHHHHHHCHHHHCCCCCH..HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 138 elditellskaaldvigsilFgarfdlledek.....lselvkaveelssllskssvqllllfp..llkylptkllrklkeavkklkdlldklieerre 229
                 ++d+ ++ls+a+ldvig+  Fg +f++l+        +sel +a+  ++s   k++v+ +l  +  +l+ + t+   + + a+ ++ ++  klie+rr+
  CDO70484.1  19 RIDVLPWLSRATLDVIGEAGFGYHFQSLDGAAehrenESELAQAFGVIFSTARKFRVMTILQVWfpVLRHFRTENSAMRQ-AMATMRQIGLKLIEQRRD 116
                 79************************9998777777899***********999998887776544488888877776666.77**************** PP

                 CHCHC..................SCSSCSHHHHHHHHCTTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.C CS
        p450 230 tldsa..................kksrrdfldalllakkekkge.sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.g 308
                  +  a                  +   rd+l++l+ +    + + + +s +e+  ++ ++l+aG++T+ss+l+w+L+ La+nP vq++lr E+++   +
  CDO70484.1 117 PVLAAtaqfvahpakedsiegdrSGLGRDLLSVLIRSN-VAEIPsQRMSINEILCQISTFLAAGHETSSSALTWTLFALARNPAVQSRLRAELRSLDmP 214
                 **9999*************999866789*********7.44444569*********************************************9998744 PP

                 TTTT-H...HHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET......T........EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB CS
        p450 309 dkrept...yddlqklpyldavikEtLRlhpvvplllpRevtkdvvir......g........ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFl 389
                  +  p+    +++++lpyldav++E+LRl+ ++  +++R++t d  i+      +          ++ G+++++++++l+++ +v+  ++e+F+p+R+l
  CDO70484.1 215 IDGVPSfhfLEQITQLPYLDAVVRESLRLYAPIS-TTMRVATADDIIPisipfmDrrgrrcehIQVRRGDIISIPIQTLNKNTDVWgADAEVFRPDRWL 312
                 4444441126899*********************.999*****6555322223324446676789********************************** PP

                 -TTS...............CTESSCTT--TTE.....EGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEE CS
        p450 390 dekg...............nskrksfaflPFG.....aGpRnCiGerlArmelklflatlLqnFevelqpetdpppil 447
                  + +               + ++    ++ FG     +G R+CiG r+A  e+k+fl  l++  e++++p  +++++ 
  CDO70484.1 313 ARLNpddmderpfrkghrtAAQGLWGNMMTFGggnpvNGNRSCIGYRFALSEIKIFLYVLVRDLEFSIDPALEIEKKV 390
                 *9999*********999997779999******33333368****************************9988877765 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.029   2.6e+02      18      65 ..      80     127 ..      65     129 .. 0.86
   2 ?    4.9   0.1    0.0039        35      13      44 ..     180     211 ..     171     219 .. 0.78
   3 ?    4.2   0.0    0.0066        59      42      73 ..     309     341 ..     307     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.029
                 HHHHHHHHHGGGSHHHHHHHHHHHHHHS--TTGG-HHHHHHHHHHHHH CS
   TetR_C_28  18 allaallaalaedpellepwrewyrrwlerleadgldpvlatlvrlAa 65 
                 + ++ +l +  ++  +++   + +r+   +l ++ +dpvla ++ ++a
  CDO70484.1  80 QVWFPVLRHFRTENSAMRQAMATMRQIGLKLIEQRRDPVLAATAQFVA 127
                 5688888899999999999999999999999999*******9999887 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0039
                 S-..-HHHHHHHHHGGGSHHHHHHHHHHHHHH CS
   TetR_C_28  13 deeerallaallaalaedpellepwrewyrrw 44 
                 +e+++++l++ l ala +p+++ ++r+ +r+ 
  CDO70484.1 180 HETSSSALTWTLFALARNPAVQSRLRAELRSL 211
                 23668999999***************999876 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0066
                 HHHS--TTGG-HH.HHHHHHHHHHHHHHHHHHH CS
   TetR_C_28  42 rrwlerleadgld.pvlatlvrlAadGlwlael 73 
                 +rwl+rl  d+ d  + +   r Aa+Glw + +
  CDO70484.1 309 DRWLARLNPDDMDeRPFRKGHRTAAQGLWGNMM 341
                 589999999977778899999********8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2606.48
//
Query:       CDO70485.1  [L=682]
Description: hypothetical protein BN946_scf184569.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-83  282.0   2.3    1.3e-82  278.3   2.3    1.9  1  COesterase     Carboxylesterase family
      7e-10   39.1   0.4    4.1e-09   36.6   0.4    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold
    0.00034   20.1   0.3    0.00063   19.3   0.3    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.14   11.5   0.1       0.22   10.8   0.1    1.2  1  DUF2235        Uncharacterized alpha/beta hydrolase domain (D


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.3   2.3   2.9e-86   1.3e-82      24     486 ..     173     646 ..     158     649 .. 0.84

  Alignments for each domain:
  == domain 1  score: 278.3 bits;  conditional E-value: 2.9e-86
                 EEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSS..SSTTSSEEEEEEE--STTTS-B CS
  COesterase  24 evdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkek..keakkklPVlVwihGggfqtgs 120
                 +   F GiPYA+pP    R++ P +  + + ++dA +f+++C+q+ ++s          +sEDCL+Ln++tP     +++     V++wihGg+f+ g+
  CDO70485.1 173 TSFRFYGIPYANPP---ARWEYPTA-YTGNTTIDARSFGSQCVQAGSTS----------GSEDCLFLNIWTPFIPgpNSRAPLKAVMFWIHGGAFTGGT 257
                 6678*********9...9******9.666779*************9532..........79**********65444333444449************** PP

                 GCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEE CS
  COesterase 121 ase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsrglfkraIl 217
                 +s+  +dg +La++g+v+vVtinYRl  lGFl+++d +++GN+G+ Dq+ AL+WV+e+Ia+FGGd++r+t+fG+sAGaasv +l+ sp + g +  a+ 
  CDO70485.1 258 GSDptFDGGSLASRGDVVVVTINYRLSTLGFLALDDGKTNGNFGIADQIIALEWVREHIAAFGGDKDRITIFGQSAGAASVRALMGSPKAIGKYAAAVP 356
                 *9999********************************************************************************************** PP

                 ES--TTSTTTSBSH........HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..CS CS
  COesterase 218 qSGsalspwaiqkk........arkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdflpekPeellkseg..kv 306
                 +S  a +++a++++            a+ + ++vgc+++ s  +++c+r  +a++l++  +           +   vvdg+f+++k + +  s    +v
  CDO70485.1 357 MSNLAGANYATTYSlyytipqeVSLIANPILAAVGCNTTGSG-VLDCMRAVDAHTLVNLPTV----------ARFLVVDGTFITSKQLPVDGSGPvaNV 444
                 ***99999999999988886544456788999****877766.**************98855..........556689******8877777775599** PP

                 EEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH..H CS
  COesterase 307 plliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklha..s 403
                  +++G+++d+g+ f+ y ++               +l+  l+ ++ ++  +++ ++ e t     + + ++ + +++++td+ f++  ++ta +    +
  CDO70485.1 445 HTMMGFMRDDGAAFIGYPTNG--------------NLTAGLIGASLNTTVANNPLFPEPT---GPNVTLNVFNVTARVTTDIEFRCLDQATAFSGVshN 526
                 ***************976666..............5566667776666666666776666...555566667778899999999998777776655336 PP

                 TT-SEEEEEEE--STTSSS.T...................TTGSSBTTTTHHHHTTGGGTSGCSS-HH.HHHHHHHHHHHHHHHHHHSSTTS....... CS
  COesterase 404 rgspvYlYsfdyrnssskk.p...................kwmgvvhgdeleyvfglpllekeeftke.deklsrkmmtywtnFaktgnPnk....... 474
                   ++v++Y+f+ + ++    p                   +    +h+ el+yvfg+   ++  ++++ d  ++++m+++w++Fa+t nPn        
  CDO70485.1 527 LFKSVWFYEFNRSYQTPGFdPnfpvceapitpehpfgdtsQEYFKCHSGELYYVFGTLPANRP-YRDDqDLPFMQRMVDVWSSFARTFNPNPdprflaa 624
                 667899999988776555462455666778889999999988889************999888.66666***********************9999999 PP

                 ..........TTSS----B.TT CS
  COesterase 475 ..........eeeekWpkytke 486
                           ++e++W+++tk 
  CDO70485.1 625 rgftstaqqlAKESSWEPVTKA 646
                 9999999999999999999765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.4   9.1e-13   4.1e-09       1      83 [.     245     336 ..     245     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 9.1e-13
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TT.........TS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAP.........ehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGn 83 
                    ++++HGG+f+ g+ + ++    +la++ ++vvv ++Yrl+          ++     + d + al+w++e+ +++g d++ri+++G+SaG+ 
     CDO70485.1 245 MFWIHGGAFTGGTGSDPTFDGGSLASRGDVVVVTINYRLSTlgflalddgKTNGNFGIADQIIALEWVREHIAAFGGDKDRITIFGQSAGAA 336
                    689***********************************98644444444367778899*************99*****************96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   1.4e-07   0.00063      12     108 ..     271     367 ..     265     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-07
                   CCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHH...HHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHH CS
  Peptidase_S9  12 drGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaeal...akegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlryd 105
                     ++vvv +n+r s+  G    d+gk  +g+  ++D+i a+e++   ++ +  d++r+ i+G S+G   + a+++  p+  +  +a+vp++++    
    CDO70485.1 271 RGDVVVVTINYRLST-LGFLALDDGKT-NGNFGIADQIIALEWVrehIAAFGGDKDRITIFGQSAGAASVRALMG-SPKAIGKYAAAVPMSNLAGAN 364
                   345889999***999.89888888876.6888888998888888222555578**********************.898888888999998887766 PP

                   CST CS
  Peptidase_S9 106 sdt 108
                   + t
    CDO70485.1 365 YAT 367
                   554 PP

>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.9e-05      0.22      94     122 ..     322     350 ..     300     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.9e-05
     DUF2235  94 pgDeIylfGFSRGAytaRalagmlekvGl 122
                 + D+I +fG S GA  +Ral+g  + +G 
  CDO70485.1 322 DKDRITIFGQSAGAASVRALMGSPKAIGK 350
                 469*****************998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4657.81
//
Query:       CDO70486.1  [L=152]
Description: hypothetical protein BN946_scf184569.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-06   28.7   0.3    2.8e-06   27.8   0.3    1.5  1  FoP_duplication  C-terminal duplication domain of Friend of P
    0.00024   20.8   0.0     0.0004   20.2   0.0    1.4  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 


Domain annotation for each model (and alignments):
>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.3   3.1e-10   2.8e-06      13      62 ..      79     126 ..      71     138 .. 0.60

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.1e-10
  FoP_duplication  13 grggrrgrgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaYmgk 62 
                      +++ r++ + ++ g  + +    ggr+   ++kp+t+e+LD+eL+a+m +
       CDO70486.1  79 SKPQRNAASDRSVGPVRTKALRSGGRA--ARSKPKTAEDLDKELEAFMKD 126
                      333333333333332333333333333..5899***************84 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.4e-08    0.0004      36      67 ..       4      35 ..       1      38 [. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.4e-08
                TSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1 36 gkskgfafVeFeskedAekAlealngkklggr 67
                g+s g+a ++Fe++ +A++A+++++g   +++
  CDO70486.1  4 GRSSGVAVITFETPAEATRAKKQFDGILAKNQ 35
                89************************887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1048.59
//
Query:       CDO70487.1  [L=261]
Description: hypothetical protein BN946_scf184569.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1754.13
//
Query:       CDO70488.1  [L=254]
Description: hypothetical protein BN946_scf184569.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-45  154.7  12.2    3.9e-45  154.3  12.2    1.1  1  HlyIII           Haemolysin-III related
  ------ inclusion threshold ------
       0.27   11.9   2.6        1.6    9.5   0.3    2.4  2  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3  12.2   4.3e-49   3.9e-45      58     224 .]      69     234 ..      63     234 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.3 bits;  conditional E-value: 4.3e-49
      HlyIII  58 SalyHtlsihseeklrkffaklDysgIslliagsylplilyalakapkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllh 156
                 Sa+yHt+s+hse  +   ++ lDy+gI++l +gs++p+++y ++++p+++ +yl+ i+a+g+++ ++ + p +++p++r  r+ +fi lgl+gv+p++h
  CDO70488.1  69 SAFYHTFSMHSE-AVAGRCNALDYAGIVVLTVGSFFPPMYYGFFCEPHYQAIYLTCITAAGLVSAYIVINPEYRKPTHRGARTKVFIFLGLSGVLPIIH 166
                 9***********.9************************************************************************************* PP

      HlyIII 157 lllvltqlgeaa.elalvllvlggvlylvGavfYalrvPErlkpgkfdivghsHqiFHvfvvlgalfhy 224
                   l+ +++   + e+ + +lv+ g+ly+ Ga++Ya r+PEr+ pg fd++++sHqiFH+fvv++al+ y
  CDO70488.1 167 -GLITHGFYTLCyEMGFGWLVVCGALYISGALLYANRIPERFSPGTFDYFFSSHQIFHFFVVAAALATY 234
                 .88889899999*****************************************************9876 PP

>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00017       1.6      14      68 ..      80     135 ..      76     180 .. 0.88
   2 ?    2.4   0.1     0.029   2.6e+02      53      77 ..     215     248 ..     182     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00017
  NADH-u_ox-rdase  14 srvlrnfrpsDYvkaaaita.afplallaleklsPsvagkamtlagligflggfll 68 
                      + v +  +  DY+ ++++t+ +f+  ++++  ++P++++  +t+ ++ g+++ +++
       CDO70488.1  80 EAVAGRCNALDYAGIVVLTVgSFFPPMYYGFFCEPHYQAIYLTCITAAGLVSAYIV 135
                      6788889999**********988888888889*****8888999999999998754 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.029
  NADH-u_ox-rdase  53 a.........mtlagligflggfllayqnssqRL 77 
                                +++a+++++ +g+l+a+  +  RL
       CDO70488.1 215 FfsshqifhfFVVAAALATYAGVLTAFHHTHRRL 248
                      2444555567889999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1789.56
//
Query:       CDO70489.1  [L=543]
Description: hypothetical protein BN946_scf184569.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-22   79.5   0.0    5.4e-14   51.8   0.0    2.3  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.6e-10   6.4e-06      35     311 ..      83     328 ..      58     340 .. 0.72
   2 !   51.8   0.0     3e-18   5.4e-14     321     431 ..     371     487 ..     367     500 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.6e-10
                 SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCC CS
        p450  35 pifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkk 132
                  i+++ l ++pv+vlsg +a +  +++k+ + ++ ++       + p +     + +  +   ++++l  + t++  l +l + + e +++ ++++   
  CDO70489.1  83 AIYQFSLLRTPVIVLSGESARRDFFQAKDLDLNAGFKFLSG---AIPMMPGVTSNLEARRIALIHKRLASAQTTD-RLaRLLPQILEDSRRTMDTW--- 174
                 57778888888888888888888888886666554332222...3366666666666677777777777777777.55555555555555555555... PP

                 CCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
        p450 133 agesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretl 231
                  g+s++ld++e +s+ ++     ++F++   l +d+     v+  +el++ l++  +    l p+l   p+++  +   a+k++ d++   +eer ++ 
  CDO70489.1 175 -GFSGTLDPFERISETTMR---CLAFTE---LADDPVK---VQRLKELYDTLDTATTPTTVLLPWL---PGPTAVRRLLATKRIYDIISTALEERTRSG 260
                 .566677777777776664...567777...3567766...7888888899988888888888855...6666655555689***********999987 PP

                 CHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT CS
        p450 232 dsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr 311
                   +     d  + l++a      +    +  +   v+ ll+aG   t +t sw +++L  +Pe ++k  eE+++ + ++ 
  CDO70489.1 261 MAR----DDTPQMLIDAG-----D---ERLIIIGFVMGLLVAGARSTGTTASWLITFLSGHPEWKAKAAEEVRRLIAEHA 328
                 777....45555666663.....2...3567999******************************************7654 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 3e-18
                 -HHHHHHHHHHHHHSCSST.TE..EEEESSS.......CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGG CS
        p450 321 lpyldavikEtLRlhpvvp.ll..lpRevtk.......dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGp 409
                  p lda i+EtLR   + + ++  +pR  +        ++ ++g  +p G  v+ + + +h + e++++P + dp+R + +     + ++a+++ GaG 
  CDO70489.1 371 TPTLDALIRETLRVAEPHVaMRqyVPRSSSAdekgdvgPLYLGGKAVPPGAYVMYPFSDVHLSSEIYQDPWRWDPGRKELN----LKAPYAYVGMGAGS 465
                 588**********9866553543378888887777777788***********************************94444....489*********** PP

                 GS-TTHHHHHHHHHHHHHHHHH CS
        p450 410 RnCiGerlArmelklflatlLq 431
                   C+G+rlA++elkl+ a+++ 
  CDO70489.1 466 TVCLGKRLATLELKLITALFVL 487
                 ****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.55
# Mc/sec: 2976.02
//
Query:       CDO70490.1  [L=2205]
Description: hypothetical protein BN946_scf184569.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-09   36.8   0.0    7.3e-09   35.5   0.0    1.7  2  RVT_1          Reverse transcriptase (RNA-dependent DNA polym
     0.0019   17.8   0.8     0.0057   16.2   0.1    2.1  2  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.82   7.4e+03     175     196 ..     146     167 ..     143     168 .. 0.86
   2 !   35.5   0.0   8.2e-13   7.3e-09       6     207 ..    1194    1426 ..    1185    1465 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.82
                 SSHHHHHHHHHHHHHHHHHTT- CS
       RVT_1 175 kskeelqelleaveewlkesgl 196
                 ++++e+qe++ ++ ewl++ g+
  CDO70490.1 146 ETQKEAQEMVAKLNEWLERKGF 167
                 678899***********99987 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 8.2e-13
                  .S-EEE......-THHHHCTB--............-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EE CS
       RVT_1    6 pgsyRpisllsvdykalnkliakrLkdvl...ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrkltafk 96  
                  +++yR i  +s  +k +     ++L  ++     +l+e q + +pg +  d +    ++ ++++++++   +l  D +k+Fd+ + e  +  + a++
  CDO70490.1 1194 LSNYRGI-TCSNFVKNVPFSWLNHLLSFYvtsLRILPETQIATQPGVQARDLTsflSQIDAYAHRHNQPLFVLRRDQRKGFDRLEPEGFYDAVRAYG 1289
                  6788998.66777777777777777777779999999*********9998888999***************************************** PP

                  ET...........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T................................TEEE CS
       RVT_1   97 vptklinliksflstrsfsvrv.nge.eskgryekkglpqGsvlSPllfnlfmnellrelrkra..........................kgvtllr 165 
                  +p++li+l  ++ ++ s+ +rv + +  +  ++ +  + qG++ SPl ++l+++ l   l+ ++                             +++ 
  CDO70490.1 1290 LPSSLIDL--DCSAQDSVPYRVkTIHgLTDSFVLSGITQQGGPFSPLKSTLTTSMLTSWLDDATppaeqlrlitfqsrsgkphtpddtlaLTTQMCE 1384
                  **998877..5556666667775555688*************************9999999988**************************999**** PP

                  CTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE. CS
       RVT_1  166 YaDDililskskeelqelleaveewlkesglkinpeKtklvl 207 
                   +DD li+ +s +  q+     e++ + +g + n++K+ l++
  CDO70490.1 1385 AMDDSLIIRTSLTTSQSSALLAERFQAAYGWETNWSKSLLYV 1426
                  *************************************98885 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   6.4e-07    0.0057       2     202 ..     592     806 ..     591     847 .. 0.76
   2 ?   -1.7   0.1      0.19   1.7e+03     178     221 ..    1686    1811 ..    1618    1817 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.4e-07
                    EEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH...TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEET CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal...ggflgasstsptgggggggnggavlsrfpltslfrrtfief 94 
                    t N+ng  ++a +      ++ +l++ +d+ +  ++E++  +  r  l  ++   ++ +ga +     +g+gg  g+ v +++ l s      ++f
     CDO70490.1 592 TINCNGL-AHAGK----QHAVSSLISVHDPHIWVINETKSPHPMRDRLHTDGynkYEAVGAKN----EHGRGGKWGVIVGVKRFLHSQRLVIDDRF 678
                    7799997.33333....566999**999***************99999998766655555555....58999*************99999999999 PP

                    SSSSGCEEEEEEEEEEEEEEE....CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH......H... CS
                    xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x... RF
  Exo_endo_phos  95 ndlvaalrreplaakleqlni....ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap......v... 177
                    n + +al +  ++ ++  ++        ++ + vr + + a +  v+ l    ++++ v+GDfNa+  + +s + +tr +++  a           
     CDO70490.1 679 NSRIVALDIVITTNNGRGYVHrfigVYAPWDPGVRGEDAHAFWTYVATLCETAPHSWTVLGDFNATLLSSESVSSTTRDGSNRAAYsaflsrAhgi 774
                    99999999999999999999888877777777777777778888888888888888899**************99999999887764444330344 PP

                    .......SSCESCETTTTTTTTTTTEB-BEEE CS
                    .......xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 178 .......glyllgggptptyvtraggsrlDri 202
                           +       +  +  + ag+s +Dr+
     CDO70490.1 775 diwlaqnDSDARIHYTCKSSGSIAGQSVIDRA 806
                    44555555555555555555555555555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.19
                     SSCESCETTTTTTTTTTTEB-B........................................................................ CS
                     xxxxxxxxxxxxxxxxxxxxxx........................................................................ RF
  Exo_endo_phos  178 glyllgggptptyvtraggsrl........................................................................ 199 
                     gl+ l +  t+++v  + + rl                                                                        
     CDO70490.1 1686 GLTHLSQVATFSNVEDGAPPRLqpldlsstlqgfsaardwarisewlrqltladlvdalagsakpparlwtmalprdlrrdfaenqilaaatls 1779
                     5666666666666666666666777777777777777777777777777777777777777777777778888888889999999999999999 PP

                     ..........EEEEEECHHHCCEEEEEEECCH CS
                     ..........xxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  200 ..........Drilaspalalfrsgvlpppla 221 
                               D+++as+a a +r + l  p +
     CDO70490.1 1780 phqplpspqfDHVIASDASAIRRPLHLSLPPT 1811
                     99999999999999999999988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.48
# Mc/sec: 13791.90
//
Query:       CDO70491.1  [L=144]
Description: hypothetical protein BN946_scf184569.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-28   98.6   0.3    2.2e-28   98.5   0.3    1.0  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.3   1.2e-32   2.2e-28       3     119 ..      11     130 ..       9     132 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1.2e-32
                  HHHHHHCTTT..SSEEEEEEECTT.TEEEEEESS-.HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHH CS
  Cofilin_ADF   3 eafkelksgk.ktkyilfkidddk.eeivveeege.tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkke 97 
                  ea+++++s+k +t+++l+ +++d  +++++ ++g+  ++elre+l+++++ Ya+ +v+y +d+eskr+k+v+I w++ ++++++k++++ + +++k+ 
   CDO70491.1  11 EAYQDVRSDKtDTNWLLLDYESDRsDKLKLTSTGSgGLAELREQLDDGKASYAYARVQYANDKESKREKFVLIIWIGPNCKVMRKAKISVHTADVKSV 108
                  89******************999889******999*88************************************************************ PP

                  CTTSEEEEEE-CGGCCSHHHHH CS
  Cofilin_ADF  98 lkgisveieatdldelteeelk 119
                  l+ +s+e+ a+++d+l+ee + 
   CDO70491.1 109 LRVYSIEVPAREKDDLKEEPII 130
                  ******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 931.52
//
Query:       CDO70492.1  [L=365]
Description: hypothetical protein BN946_scf184569.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-16   57.5   1.5    9.2e-16   57.5   1.5    2.3  4  Sec20          Sec20
  ------ inclusion threshold ------
      0.035   12.8   4.5      0.046   12.4   4.5    1.3  1  AAA_13         AAA domain
      0.054   13.1   0.1       0.16   11.5   0.1    1.8  1  Baculo_11_kDa  Baculovirus 11 kDa family
       0.13   12.6   0.5        1.5    9.2   0.0    2.4  2  HBS1_N         HBS1 N-terminus


Domain annotation for each model (and alignments):
>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.2   9.8e+03      55      67 ..      12      24 ..      10      28 .. 0.77
   2 ?   -1.3   0.1      0.48   2.2e+03      38      47 ..      81      90 ..      42     117 .. 0.62
   3 ?   -1.3   0.1      0.47   2.1e+03      21      35 ..      85      99 ..      71     133 .. 0.55
   4 !   57.5   1.5     2e-19   9.2e-16       3      92 .]     146     235 ..     144     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
       Sec20 55 skklvkklerrdk 67
                + +l+ +lerr+k
  CDO70492.1 12 TTNLIASLERRQK 24
                7789999998865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.48
       Sec20 38 lekleeeykq 47
                l ++ ee+k+
  CDO70492.1 81 LRQVVEEFKS 90
                3333333333 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.47
       Sec20 21 vqqSeenleeldast 35
                v++ + +l  l++  
  CDO70492.1 85 VEEFKSALARLRKDM 99
                444444444444333 PP

  == domain 4  score: 57.5 bits;  conditional E-value: 2e-19
       Sec20   3 akqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvkkRi 92 
                 ++++Te+l++   l++ e ++S +  + l++st  l++++  +  +++++ +sk+l++ le++d  d+ lv+++l +f+++v++++k+R+
  CDO70492.1 146 NHDVTEALQRTLGLMQGELERSVLSTQLLESSTAALKSTSTTHDVLSSLMTTSKHLITALEKADWLDRALVLVGLLFFVLVVLFILKQRL 235
                 789*************************************************************************************97 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.5     1e-05     0.046     338     457 ..      13     138 ..       5     208 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
      AAA_13 338 kglqraleaKrkepfksvelesvkakie..........sikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaie 426
                 ++l   le++ k++++ +++ ++ + +           ++ ++++++ ++i+  N  v++  +++e+a+ +l++ +vee++s+l ++ k++++++ a +
  CDO70492.1  13 TNLIASLERRQKDISE-FQIPRLRKCTGplsvqqqyaaELRDDLDAFARQIETLNVAVDD--QRTERARRELRQ-VVEEFKSALARLRKDMRAAALASK 107
                 4555666666666665.4443333333122234444449****************99997..677899*****9.9****************9988888 PP

      AAA_13 427 klekelkeeeaelkkleeeikeLekqlrdek 457
                  + ++++ + +e   +   ++e++   ++++
  CDO70492.1 108 RAIDAQQVSRKEELLRSSAVREKQSLNEKVT 138
                 8887777777777666677777765443333 PP

>> Baculo_11_kDa  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.7e-05      0.16      11      54 ..     180     231 ..     165     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.7e-05
  Baculo_11_kDa  11 ratasvldgDQLeqlvsrNrsflr.....dFv...Lvicglvvfvvivlfil 54 
                    +++++ + +D L+ l++  + +++     d++   Lv+ gl+ fv++vlfil
     CDO70492.1 180 ALKSTSTTHDVLSSLMTTSKHLITalekaDWLdraLVLVGLLFFVLVVLFIL 231
                    44577888888888888888888655555444444***************96 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.17   7.4e+02      15      37 ..      71      93 ..      44     106 .. 0.73
   2 ?    9.2   0.0   0.00033       1.5      41      66 ..     129     154 ..     120     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
      HBS1_N 15 eeLsdedqarLrscldevrevLg 37
                ++ ++  +  Lr++++e +++L+
  CDO70492.1 71 DQRTERARRELRQVVEEFKSALA 93
                27888889999999999999997 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00033
      HBS1_N  41 skvtvtekqikeAlwkyyyDvekald 66 
                 +k +++ek  ++Al+k + Dv++al+
  CDO70492.1 129 EKQSLNEKVTEDALMKANHDVTEALQ 154
                 345679******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1786  (0.0996151); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2441.02
//
Query:       CDO70493.1  [L=218]
Description: hypothetical protein BN946_scf184569.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-12   45.4   2.3    1.6e-11   44.7   2.3    1.4  1  Neugrin       Neugrin
    2.3e-06   27.8  10.7    5.1e-06   26.7  10.7    1.6  1  MRP-L20       Mitochondrial ribosomal protein subunit L20
     0.0043   16.9   0.1      0.011   15.6   0.1    1.7  1  MarR_2        MarR family
  ------ inclusion threshold ------
      0.017   14.5   1.2        2.8    7.4   0.0    2.7  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> Neugrin  Neugrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   2.3   3.6e-15   1.6e-11       6      67 ..     115     176 ..     110     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.6e-15
     Neugrin   6 aPeRrLtWeaieqiRYLkeefpeeWtvprLaeGFdvstDvirRvlkskfvPtlerklkqDak 67 
                 aP+R+++ ea++ +R L+   p  ++ p Lae F +s + +rR+lksk+ P+ e++++  a+
  CDO70493.1 115 APPRKISREAMDSLRELHALDPRTFSTPVLAERFRISKEAVRRILKSKWEPSREQRARLAAR 176
                 9*******************************************************996655 PP

>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7  10.7   1.1e-09   5.1e-06      85     158 ..     119     196 ..      61     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.1e-09
     MRP-L20  85 hltkedieeirrLraeDPekwsrkkLakkFgcsklfvsmvt....eapkekkkeveaeleavkerWgekrriaredRk 158
                 +++ e  + +r+L+a DP ++s+  La++F++sk  v+ ++    e+++e++++  a+   +k++W  ++r+  +d++
  CDO70493.1 119 KISREAMDSLRELHALDPRTFSTPVLAERFRISKEAVRRILkskwEPSREQRARLAARERLAKSEWRLQKRQEERDKH 196
                 5999************************************944444555777777777888999**988887666654 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.4e-06     0.011       7      43 ..     124     160 ..     119     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2   7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilk 43 
                   + L +L++ ++r ++   la+r+++sk av rilk
  CDO70493.1 124 AMDSLRELHALDPRTFSTPVLAERFRISKEAVRRILK 160
                 567799*****************************98 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.3    0.0036        16      31      43 ..      24      36 ..      23      36 .. 0.94
   2 ?    7.4   0.0   0.00063       2.8      34      49 ..     145     160 ..     143     161 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0036
  HTH_Tnp_ISL3 31 kavArqlgvSwtT 43
                  ++vA++++++w+T
    CDO70493.1 24 TTVAELTRTHWRT 36
                  89*********98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00063
  HTH_Tnp_ISL3  34 ArqlgvSwtTVwrild 49 
                   A+++++S   V+ril+
    CDO70493.1 145 AERFRISKEAVRRILK 160
                   9*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1383.84
//
Query:       CDO70494.1  [L=232]
Description: hypothetical protein BN946_scf184569.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-06   26.0   0.0    1.4e-05   25.3   0.0    1.2  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.6e-10   1.4e-05       5     103 ..      18     130 ..      15     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7.6e-10
                 HHHTTTS-.EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.....TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-.........CGGGHHHHH CS
         BTB   5 resgelcD.vtlvvgdgkefkahkavLaarSpyFkalftsk.....eieessvseielddvepeafealLefiYtgeleit.........seenleelL 88 
                 r+s  ++D v+++v+ ++ fk+ k      +++Fk++f+        + es+ + ++l+ ++ + f+alL++++ +  + +         s+e+ +e+L
  CDO70494.1  18 RDSTFYSDhVVILVE-DSLFKVPKRPFVEGAQVFKDMFSLPgyaetADGESDDKPLKLEGITKDGFRALLRVMFESYHQPPevaksvhelSTEEWVEVL 115
                 667778886789999.6************************99988444555557******************99988888999******9******** PP

                 HHHHHHT-HHHHHHH CS
         BTB  89 aaadllqiprlkkac 103
                 ++a +++ +++ +++
  CDO70494.1 116 KLATMWEYDKIRRIA 130
                 *******99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1620.98
//
Query:       CDO70495.1  [L=462]
Description: hypothetical protein BN946_scf184569.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-08   33.6   5.3    7.9e-08   32.3   5.3    1.6  1  FYVE          FYVE zinc finger
    0.00011   22.4   3.2    0.00011   22.4   3.2    2.3  3  FYVE_2        FYVE-type zinc finger
    0.00027   20.7   8.8     0.0025   17.6   0.1    2.5  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0032   17.4   0.0        2.9    7.8   0.0    2.3  2  Armet         Degradation arginine-rich protein for mis-foldi
  ------ inclusion threshold ------
      0.011   14.9   3.0       0.92    8.6   0.2    2.1  2  DUF4518       Domain of unknown function (DUF4518)
      0.024   14.4   0.2       0.17   11.7   0.0    2.4  2  SAP           SAP domain
      0.039   13.9   0.2      0.082   12.9   0.2    1.5  1  Rho_N         Rho termination factor, N-terminal domain
       0.26   10.1   0.4        1.7    7.4   0.1    2.0  2  DUF2254       Predicted membrane protein (DUF2254)
       0.54   10.2   8.1       0.16   11.9   4.5    1.9  2  C1_1          Phorbol esters/diacylglycerol binding domain (C
        2.6    8.2   8.1        1.4    9.0   1.9    2.9  3  zf-RING_UBOX  RING-type zinc-finger
        7.9    6.7   9.2        1.3    9.2   2.3    2.6  2  Zn-ribbon_8   Zinc ribbon domain


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   5.3   4.9e-11   7.9e-08       8      66 ..      20      81 ..      15      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.9e-11
                --SB-TTT--B-.-SSS--EE-TTT--EE-STTS-EEE.EE..GGGTEEEEEEE-HHHHHHH CS
        FYVE  8 evkkCeiCakkF.sllrrrhhCrlCGkvvCekCssklvall..ekeaeeksvrvCkeClael 66
                + ++C++C+k+F  l+ r   C +CG  +C++C++ ++ ++   +e+  ++v vC  C++ l
  CDO70495.1 20 NESSCRKCNKEFnILFARSRRCNHCGYSYCQSCTDFQALMPrsGNESGYDPVPVCGFCIEYL 81
                6689********6678******************999987722334445899******9876 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   3.2   6.8e-08   0.00011      52      88 ..      19      55 ..      15      87 .. 0.79
   2 ?   -3.9   2.7       9.7   1.6e+04      17      48 ..     315     346 ..     302     352 .. 0.61
   3 ?   -2.7   0.1       4.1   6.7e+03      89     102 ..     430     443 ..     424     446 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.8e-08
      FYVE_2 52 lgethCilCleefkllvnskrqCldCklnvCkkCsve 88
                 +e+ C +C +ef++l + +r C+ C +  C++C+  
  CDO70495.1 19 ANESSCRKCNKEFNILFARSRRCNHCGYSYCQSCTDF 55
                5899******************************987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.7
      FYVE_2  17 rdeklrkkeeeRlgelkeklekekskrellgn 48 
                 r+ + r+++eeR  e   +  +e s+re  ++
  CDO70495.1 315 RERHAREEDEERQYEEELRRATEASRRESQSQ 346
                 45555555555554444444457777766555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.1
      FYVE_2  89 nkkekvwlCkiCse 102
                 ++ e++ lC iC+ 
  CDO70495.1 430 SRLERTGLCVICQD 443
                 55566778888875 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   4.3     0.014        23       2      31 ..      21      54 ..      20      62 .. 0.82
   2 !   17.6   0.1   1.5e-06    0.0025       3      24 ..     436     457 ..     434     458 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.014
                GSB-TTTSSS.....BS-EEETTEEEEEE-HHHHH CS
  zf-C3HC4_3  2 deeCviCler.....prnvvllpCgHlvlCeeCae 31
                ++ C  C+++      r+  + +Cg+  +C++C +
  CDO70495.1 21 ESSCRKCNKEfnilfARSRRCNHCGYS-YCQSCTD 54
                568999999766666888899999999.*****75 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.5e-06
                 SB-TTTSSSBS-EEETTEEEEE CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlv 24 
                  +CviC+++++n+++++Cg+++
  CDO70495.1 436 GLCVICQDEEANIAIVDCGYVA 457
                 58*****************985 PP

>> Armet  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0018       2.9     101     135 ..      89     123 ..      75     132 .. 0.89
   2 !    7.2   0.0    0.0028       4.6      96     140 ..     265     309 ..     260     314 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0018
       Armet 101 vdlkklkvkeLkkiledWgeeCkgCieksdfikri 135
                  +lk+l +++Lkk  + ++ + +g +ek +fi+r+
  CDO70495.1  89 GQLKQLPMAKLKKYAKAYNINVTGILEKDEFIDRL 123
                 57999***************************986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0028
       Armet  96 idlksvdlkklkvkeLkkiledWgeeCkgCieksdfikrieelkp 140
                 + +++ +l  l +  Lk+il +   + +  +ek d+++r++ l +
  CDO70495.1 265 LGMSDEQLAALSISVLKEILFKNHVNARLVVEKGDLVSRVKTLIE 309
                 6778899999******************************99865 PP

>> DUF4518  Domain of unknown function (DUF4518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3    0.0021       3.4      68     117 ..     101     150 ..      92     168 .. 0.77
   2 ?    8.6   0.2   0.00057      0.92      62     132 ..     280     346 ..     260     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0021
     DUF4518  68 kYLaskgvsvppdseKadLiervlelwksesqseeaskkeatssksqqen 117
                 kY +++++ v+   eK++ i+r +   + + qs+++++++++++    + 
  CDO70495.1 101 KYAKAYNINVTGILEKDEFIDRLIAARNASPQSQQQQQQQQYAQRPPYQP 150
                 899**********************9999777777777666666544433 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00057
     DUF4518  62 krellFkYLaskgvsvppdseKadLiervlelwksesqseeaskkeatssksqqeneeeskeakeeeeeel 132
                  +e+lF    +++v     +eK dL++rv+ l + e + +e ++ e  ++ + +e+  + +ea+++e++++
  CDO70495.1 280 LKEILF----KNHVNARLVVEKGDLVSRVKTLIEAERAERERHAREEDEERQYEEELRRATEASRRESQSQ 346
                 445555....5777777789***************777777766666666666666555555554444443 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.17       3      33 ..      93     125 ..      91     127 .. 0.88
   2 ?   -0.1   0.0      0.52   8.4e+02       3      13 ..     274     284 ..     272     307 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 T--HHHHHHHHHHTT--TTS-..HHHHHHHHHH CS
         SAP   3 kltVaeLKeeLkkrGLptsGk..KaeLieRLke 33 
                  l  a+LK++ k++++ ++G   K e i+RL+ 
  CDO70495.1  93 QLPMAKLKKYAKAYNINVTGIleKDEFIDRLIA 125
                 566789************************975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.52
                 T--HHHHHHHH CS
         SAP   3 kltVaeLKeeL 13 
                  l+ + LKe+L
  CDO70495.1 274 ALSISVLKEIL 284
                 57778888887 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     5e-05     0.082       1      36 [.      90     125 ..      90     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
                 HHHHS-HHHHHHHHHHTT-TTGGGS-HHHHHHHHHH CS
       Rho_N   1 eLkektlseLraiAkelgienysrlRKqdLIfaIlk 36 
                 +Lk++++++L+++Ak ++i  ++ l K + I  ++ 
  CDO70495.1  90 QLKQLPMAKLKKYAKAYNINVTGILEKDEFIDRLIA 125
                 7******************88888888887776665 PP

>> DUF2254  Predicted membrane protein (DUF2254)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14   2.3e+02     194     233 ..      82     121 ..      79     157 .. 0.77
   2 ?    7.4   0.1     0.001       1.7     206     269 ..     275     347 ..     243     350 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
     DUF2254 194 piraersGylqaidveaLvklaeehdlvielevrpGdfvv 233
                 +i+a+ +G l++  +++L k+a+++++ +    +  +f+ 
  CDO70495.1  82 QITASGKGQLKQLPMAKLKKYAKAYNINVTGILEKDEFID 121
                 6889999999999999999999999999876666666665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
     DUF2254 206 idveaLvklaeehdlvielevrpGdfvvkgeplakvwgee.........ddeelaeklreafligrertfeqD 269
                  +++ L +++ ++++  +l+v+ Gd v + + l+++++ e         ++++ +e+lr+a + +r+++++qD
  CDO70495.1 275 LSISVLKEILFKNHVNARLVVEKGDLVSRVKTLIEAERAErerhareedEERQYEEELRRATEASRRESQSQD 347
                 5566788888899999********************99999*****998778899*****************9 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.5   9.7e-05      0.16       9      44 ..      19      54 ..      15      60 .. 0.88
   2 ?   -1.5   0.1       1.5   2.4e+03       8      19 ..     432     443 ..     428     453 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-05
                SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCCT CS
        C1_1  9 kqptfCkhCgeflwgkekqglkCswCkllvHkkChe 44
                 +++ C +C++ +  ++ +  +C+ C++++ ++C  
  CDO70495.1 19 ANESSCRKCNKEFNILFARSRRCNHCGYSYCQSCTD 54
                57899********55****************99975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 -SS--B-TTT-S CS
        C1_1   8 fkqptfCkhCge 19 
                 +++++ C  C++
  CDO70495.1 432 LERTGLCVICQD 443
                 678899999997 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.9   0.00086       1.4       1      25 [.      24      53 ..      24      70 .. 0.69
   2 ?   -1.7   0.1         2   3.2e+03      16      25 ..      74      78 ..      64      92 .. 0.60
   3 ?    1.9   0.1      0.14   2.4e+02       1      19 [.     438     456 ..     438     457 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00086
  zf-RING_UBOX  1 CpIClelft.........dPlvlpCGHtFCreCl 25
                  C  C+ +f+         +    +CG ++C++C 
    CDO70495.1 24 CRKCNKEFNilfarsrrcN----HCGYSYCQSCT 53
                  6678888887766443222....6*********7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2
  zf-RING_UBOX 16 CGHtFCreCl 25
                  CG +     +
    CDO70495.1 74 CGFC-----I 78
                  6644.....3 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.14
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHt 19 
                   C IC+++  +  +v  CG +
    CDO70495.1 438 CVICQDEEANIaIV-DCGYV 456
                   99***888766455.89975 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.3   0.00079       1.3       8      33 ..      24      45 ..      16      48 .. 0.80
   2 ?    0.8   0.7      0.34   5.5e+02       8      24 ..      49      65 ..      46      78 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00079
  Zn-ribbon_8  8 CeeCghefevlqsisdapltaCPeCg 33
                 C++C++ef++l + s      C +Cg
   CDO70495.1 24 CRKCNKEFNILFARS----RRCNHCG 45
                 *********998533....45****8 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
  Zn-ribbon_8  8 CeeCghefevlqsis.da 24
                 C++C  +f +l++ s  +
   CDO70495.1 49 CQSCT-DFQALMPRSgNE 65
                 ****9.999998877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1775  (0.0990016); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.34s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 2795.33
//
Query:       CDO70496.1  [L=671]
Description: hypothetical protein BN946_scf184569.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-08   34.5   0.5    2.4e-08   33.8   0.5    1.4  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
    0.00015   21.6   0.1    0.00031   20.6   0.1    1.5  1  PHD             PHD-finger
  ------ inclusion threshold ------
      0.037   14.3   0.1       0.34   11.2   0.0    2.4  2  ABC_tran_CTD    ABC transporter C-terminal domain
      0.071   13.0   0.1       0.46   10.4   0.0    2.3  2  RHH_5           CopG-like RHH_1 or ribbon-helix-helix domain,
      0.085   12.7   4.1       0.15   11.9   4.1    1.3  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.11   12.6   0.1       0.58   10.3   0.0    2.2  2  MbeD_MobD       MbeD/MobD like
       0.14   13.0   1.6        3.4    8.5   0.1    2.6  2  FliT            Flagellar protein FliT
       0.22   10.3   1.0       0.32    9.8   1.0    1.1  1  Spc7            Spc7 kinetochore protein
       0.25   11.0   0.0       0.48   10.1   0.0    1.4  1  Cytochrom_NNT   NapC/NirT cytochrome c family, N-terminal reg
       0.32   11.3   1.2       0.78   10.1   0.5    1.9  2  BLOC1_2         Biogenesis of lysosome-related organelles com


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.5   1.3e-11   2.4e-08       3      53 ..     588     645 ..     586     646 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.3e-11
                 EEEEEEEEEETTEEC........EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   3 VerIidhrtdkdgle........leYlVKWkglpysentWEpeenlekcfqelideFkk 53 
                 VerIi++r  ++              lVKW g+  ++++W ++e+l++c  +li+ F++
  CDO70496.1 588 VERIIGRRPYDSDVAakvkrpdrFLWLVKWDGWKAEYASWTEREHLGDC-AKLIEDFEQ 645
                 9*******7777777799***999*************************.889****96 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.7e-07   0.00031      19      51 ..     518     551 ..     507     552 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.7e-07
                 TTTSCEEETTTSSSTHSHHSHHSS.TBSSTTTHT CS
         PHD  19 dgCkrwfHqkClkppleseekpeg.ewlCekCke 51 
                 ++C+ w+H  C++++  + + + + e++C+ C++
  CDO70496.1 518 ESCEAWYHFGCVGLEIGDPRLEPDaEFFCPPCES 551
                 78*************9877665557*******86 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.1   1.9e+03      19      49 ..      76     104 ..      74     124 .. 0.74
   2 ?   11.2   0.0   0.00019      0.34       4      36 ..     172     204 ..     170     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
  ABC_tran_CTD  19 aLEeeiaeleaeladpelysdpeklaelsae 49 
                   aLE+  + l a+l+  e+   +e+la+++  
    CDO70496.1  76 ALEKIDTHLSARLSRMEV--AYEALAKVTSD 104
                   677777778888888774..47777777665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00019
  ABC_tran_CTD   4 ykeqreleeleaeIeaLEeeiaeleaeladpel 36 
                     e+ e +++ ++Ie+LE    el++ ++dp+ 
    CDO70496.1 172 SEEKSEAQTVFSRIEQLERAVVELTETVSDPDA 204
                   57999**************************94 PP

>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.75   1.3e+03       3      14 ..     421     432 ..     419     433 .. 0.86
   2 ?   10.4   0.0   0.00025      0.46      11      30 ..     638     657 ..     637     662 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.75
       RHH_5   3 RvnvtLPeelle 14 
                 R++v LP++l++
  CDO70496.1 421 RITVPLPRGLRK 432
                 9*******9986 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00025
       RHH_5  11 elleeLeewAdeegRsvSnl 30 
                 +l e++e+ A+ egR++S l
  CDO70496.1 638 KLIEDFEQAAEIEGRDLSRL 657
                 578***************76 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.1   8.3e-05      0.15      68     179 ..      77     186 ..      65     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-05
                     HHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHT CS
  Apolipoprotein  68 leelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrek 162
                     le+++ +l++ ++++     +++ ++   ++++ + +r+++++++++l+  +a ++   r++ +e l+ l+  + + a+++++++++ ++ l e 
      CDO70496.1  77 LEKIDTHLSARLSRMEVA-YEALAKVTSDITPVTNVYRQETKEGLDRLHGDIANLTNANRKETKEGLDHLHALVLNLAKSSRANADRVAQLLGEP 170
                     556666666666665443.3366677778888899999999999999999999999999999999999999999999999999999999999999 PP

                     S-TTSHHHHHS--XXXX CS
  Apolipoprotein 163 leeqaeelrerleanle 179
                      +e+ +e +    + +e
      CDO70496.1 171 TSEEKSEAQTVFSR-IE 186
                     99977777655544.33 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00032      0.58       1      37 [.      66     102 ..      66     119 .. 0.92
   2 ?   -1.6   0.1       1.7     3e+03      46      65 ..     180     199 ..     169     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
   MbeD_MobD   1 mtelekqLLsAlEqLQqdYeqrlqeWesafaelqrmf 37 
                 m el +  LsAlE++  + + rl+  e a++ l ++ 
  CDO70496.1  66 MQELVTIFLSALEKIDTHLSARLSRMEVAYEALAKVT 102
                 8899999************************998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
   MbeD_MobD  46 aLseqvtgLsqQVesLseqv 65 
                     ++++L + V +L e+v
  CDO70496.1 180 TVFSRIEQLERAVVELTETV 199
                 45578888888888888887 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0019       3.4      11      82 ..      86     159 ..      76     161 .. 0.84
   2 ?    2.9   0.1      0.11     2e+02      26      62 ..     165     197 ..     160     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHCS--ST--HHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHH CS
        FliT  11 delaaleaerqqlverlreldaaplspaereekrellr....rilandaeirallqprldelqkllgalrrqrkan 82 
                  +l+++e  +++l+   + ++  p ++  r+e  e l      i  + ++ r+ +++ ld+l++l+ +l ++ +an
  CDO70496.1  86 ARLSRMEVAYEALAKVTSDIT--PVTNVYRQETKEGLDrlhgDIANLTNANRKETKEGLDHLHALVLNLAKSSRAN 159
                 467777777777777777777..8888888888888888889***************************9999998 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
                 HHHCS--ST--HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FliT  26 rlreldaaplspaereekrellrrilandaeirallq 62 
                 +l  +    ++++e+ e + +++ri ++++++ +l++
  CDO70496.1 165 QLLGE----PTSEEKSEAQTVFSRIEQLERAVVELTE 197
                 44444....49999********************998 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00018      0.32     137     251 ..      77     200 ..      74     228 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeeka....eleeeleklqeaaeeles.....idkeeLeelreelaelkaeieekkkelaelq 226
                 le++ + l+ +l+ +e  +e L+k  + ++ + + +++e +    +l+  +++l +a+++ ++     +    L+ ++++ a+++   + + + ++e +
  CDO70496.1  77 LEKIDTHLSARLSRMEVAYEALAKVTSDITPVTNVYRQETKegldRLHGDIANLTNANRKETKegldhLHALVLNLAKSSRANADRVAQLLGEPTSEEK 175
                 8999**********************9998887777766654444888888899886666555121113334444444444444444445555566777 PP

        Spc7 227 eqleeleekieelkeqkseleeeia 251
                 ++ +++ ++ie+l+    el e ++
  CDO70496.1 176 SEAQTVFSRIEQLERAVVELTETVS 200
                 7777777777777777766666655 PP

>> Cytochrom_NNT  NapC/NirT cytochrome c family, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00027      0.48      36     105 ..     543     611 ..     538     629 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
  Cytochrom_NNT  36 eeFCvsCHemednveeykesiHysnrsgvraeCsdCHvPkelvkklarkiqaskevlaklvgkidtkekf 105
                    e FC  C + +d ++e ++s  ++ +  vr +C    + +e+ ++++++i++ + + + ++ k++ +++f
     CDO70496.1 543 EFFCPPCES-SDSAREQRQSLSFQEAACVRPDCDRAGLAEETNEYFVERIIGRRPYDSDVAAKVKRPDRF 611
                    669****85.778999***********************************9998888888888888776 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.5     9e+02      23      78 ..      75     131 ..      67     136 .. 0.66
   2 ?   10.1   0.5   0.00044      0.78       6      83 ..     126     201 ..     121     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.5
     BLOC1_2  23 klLeklNeaasekykklkdvaaslekkleklnekye.elqpylqqidqiekqvteLe 78 
                 + Lek+ ++ s++   ++ + + l+k  +++    +   q+ ++ +d+++ +++ L+
  CDO70496.1  75 SALEKIDTHLSARLSRMEVAYEALAKVTSDITPVTNvYRQETKEGLDRLHGDIANLT 131
                 567777777777777777777777777777666655455556666777777766665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00044
     BLOC1_2   6 kvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavse 83 
                 +++++ +a+ + t+e +++L++l  + ++   + +d++a+l  +   ++e++ e q  +++i+q+e+ v eL+e+vs 
  CDO70496.1 126 DIANLTNANRKETKEGLDHLHALVLNLAKSSRANADRVAQLLGE--PTSEEKSEAQTVFSRIEQLERAVVELTETVSD 201
                 57788888889999999999999999999999999999999765..5667779**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 4083.54
//
Query:       CDO70497.1  [L=490]
Description: hypothetical protein BN946_scf184569.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-44  152.6   0.0    3.7e-33  114.7   0.0    2.3  2  FMO-like       Flavin-binding monooxygenase-like
    8.2e-14   51.6   0.0    3.7e-09   36.3   0.0    3.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.6e-11   44.0   0.0    5.3e-09   35.7   0.0    3.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-06   27.4   0.0    0.00091   18.5   0.0    3.1  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    5.3e-06   26.5   0.5       0.02   14.9   0.0    3.6  3  NAD_binding_9  FAD-NAD(P)-binding
    6.2e-06   26.0   0.1        2.7    7.5   0.0    4.2  4  DAO            FAD dependent oxidoreductase
    1.7e-05   25.3   0.4     0.0033   18.0   0.0    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.4e-05   23.1   0.0      0.004   17.4   0.0    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.058   12.6   0.1       0.19   10.9   0.0    1.7  2  Thi4           Thi4 family
       0.06   12.6   0.2        2.4    7.4   0.1    2.1  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   2.1e-36   3.7e-33       2     213 ..      22     233 ..      21     237 .. 0.89
   2 !   35.7   0.0   1.9e-12   3.3e-09     299     340 ..     249     293 ..     242     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 2.1e-36
    FMO-like   2 kkvaviGaGvsGlasikcclee......gleptcfersddiGGlwrfk.enveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklf 93 
                 k++aviGaG  Gla+ik   +           t fe  d++GG+w     +++   +++y s+ +n+   ++ ++ fp+  + p + + s +l yl+ +
  CDO70497.1  22 KHIAVIGAGPVGLAAIKIIKDSpefkagHWTVTAFEARDNLGGIWYPApPDADPPLTALYDSLTTNTPHPLMSYTSFPFRPETPLYPPASTVLAYLHDY 120
                 99***************9987532222235679************87625677789******************************************* PP

    FMO-like  94 akefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlG 192
                 ak fdll +i f+t v sv+ +pd     +w+v+    g +e+  +d v++  Gh+  p +p        + +G++ hs  y++pe ++gk +lv+G G
  CDO70497.1 121 AKTFDLLPHILFNTPVQSVRWNPDA---KKWDVTF---GCQETRQYDLVLIANGHYRVPRFPDTKGLDAWRARGKVTHSAWYRRPEDYTGK-ILVVGGG 212
                 ************************6...57***87...56677779****************98766666779*****************8.899**** PP

    FMO-like 193 nsggdiavelsrtaeqvllst 213
                  sg d+a+e    a++v+ s 
  CDO70497.1 213 YSGMDVASETRPFAKEVIHSI 233
                 ****************99875 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 1.9e-12
    FMO-like 299 kssvkel...tetsaifedgtveedidvvifatGytfafpflees 340
                 +++v e+    e  +ifedgt e++id vi+atGy f+fpfl e+
  CDO70497.1 249 RGRVVEYldaDEGKVIFEDGTSENGIDHVILATGYQFNFPFLSEP 293
                 56665542226889****************************997 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.6     0.021        37       2      13 ..      26      37 ..      25      49 .. 0.83
   2 !   36.3   0.0   2.1e-12   3.7e-09      77     275 ..     107     291 ..      82     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
  Pyr_redox_3  2 IiGaGPaGlaaa 13
                 +iGaGP Glaa 
   CDO70497.1 26 VIGAGPVGLAAI 37
                 8********975 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 2.1e-12
  Pyr_redox_3  77 klsrkealeYlrevaksfel..piklfeeVesvkk..edegfevetske.tyeAkkviiAtGefdkPnklnipGeek.....lvkhyskvkefhkyag 164
                  ++ + ++l Yl  +ak+f+l  +i  ++ V+sv    ++++  v+   + t + + v+iA G +  P++++ +G +      +v+h++ ++ +++y+ 
   CDO70497.1 107 YPPASTVLAYLHDYAKTFDLlpHILFNTPVQSVRWnpDAKKWDVTFGCQeTRQYDLVLIANGHYRVPRFPDTKGLDAwrargKVTHSAWYRRPEDYT- 203
                  7888999************977799********87435788999976543888899******************99544555678999999998885. PP

  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvv 262
                   k++V+Gg+ S++D+A e+    +eV   + g + e+e+             ++++              v+ ++ +e   kv +edg++ +  d v+
   CDO70497.1 204 GKILVVGGGYSGMDVASETRPFAKEVIHSITGVTPEDED--G---------GKFKK----------RGRVVEYLDADE--GKVIFEDGTSENGIDHVI 278
                  589***************999988887777764333222..1.........11111..........122333333332..256667777766677777 PP

  Pyr_redox_3 263 latGykpdlsflk 275
                  latGy+ ++ fl+
   CDO70497.1 279 LATGYQFNFPFLS 291
                  7777777777776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0013       2.3     141     160 ..      20      39 ..       4      69 .. 0.64
   2 !   35.7   0.0     3e-12   5.3e-09       2     169 ..      23     230 ..      22     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
                  -TSEEEEES-SHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGyiGvElAaa 160
                   +k+i+v+G+G++G+     
   CDO70497.1  20 EQKHIAVIGAGPVGLAAIKI 39 
                  45788888888888765544 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 3e-12
                  SEEEE--SHHHHHHHHHHHH......HTS-EEEEE............TTHCHHHCSHHHHCHHHHHHHHHHHHH........................ CS
                  xxxxxxxxxxxxxxxxxxxx......xxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq......agakvtlve............legtclnggcllskallgvaedaeias........................ 57 
                  +++viG+Gp Glaa + ++           vt +e                              +  +   +                         
   CDO70497.1  23 HIAVIGAGPVGLAAIKIIKDspefkaGHWTVTAFEardnlggiwypaP---------------PDADPPLTALYdslttntphplmsytsfpfrpetp 105
                  799***********9999999888644667888864444333333331...............22222222111333333344555566777777778 PP

                  ...............HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCC CS
                  ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...............evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealkl 138
                                  ++  l  +i + + ++ v+  p++kk  ++    g +e+ +yd +++A G    pr ++++G+ + +    +  +sa + + 
   CDO70497.1 106 lyppastvlaylhdyAKTFDLLPHILFNTPVQSVRWNPDAKKWDVT---FGCQETRQYDLVLIANGHyrVPRFPDTKGL-DAWRARGKVTHSAWYRRP 199
                  899**99999999886667777788888888999999999998883...37889************66578888*****.777777799999999999 PP

                  SS-TSEEEEES-SHHHHHHHHHHHHHT-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 139 kllpkrivvvGgGyiGvElAaalaklgkevt 169
                  +    +i+vvGgGy G+++A++ + ++kev 
   CDO70497.1 200 EDYTGKILVVGGGYSGMDVASETRPFAKEVI 230
                  9999***********************9974 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.073   1.3e+02     188     202 ..      18      32 ..       3      62 .. 0.69
   2 !   18.5   0.0   5.1e-07   0.00091     101     209 ..     116     221 ..      98     238 .. 0.79
   3 ?    3.5   0.0     0.019        33     324     342 .]     267     285 ..     260     285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.073
  K_oxygenase 188 llakkriaVvGsGqS 202
                   +++k+iaV+G+G  
   CDO70497.1  18 IAEQKHIAVIGAGPV 32 
                  678999999999854 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 5.1e-07
  K_oxygenase 101 YlrWvasqle..eqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPev..leklegkervvHsseylerkeellakk 192
                  Yl+  a+ ++   ++ f++ v++v+++ +++   ++v+     g +e+++   ++++ G    p  P++  l++ + + +v+Hs+ y + +       
   CDO70497.1 116 YLHDYAKTFDllPHILFNTPVQSVRWNPDAK--KWDVTF----GCQETRQYDLVLIANGhyRVPRFPDTkgLDAWRARGKVTHSAWYRRPE---DYTG 204
                  6777777776444599************875..688888....666666666677777755678888765567777999*******99988...5789 PP

  K_oxygenase 193 riaVvGsGqSaaeifed 209
                  +i+VvG+G S+ +++ +
   CDO70497.1 205 KILVVGGGYSGMDVASE 221
                  9***********99876 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.019
  K_oxygenase 324 geeetlevdavvlATGYrr 342
                  + +++  +d v+lATGY++
   CDO70497.1 267 DGTSENGIDHVILATGYQF 285
                  56677889*********85 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05      0.02       1      74 [.      25      97 ..      25     170 .. 0.61
   2 ?   -1.2   0.1         1   1.8e+03       2      13 ..     208     219 ..     207     223 .. 0.86
   3 !    6.7   0.0    0.0036       6.5     121     155 ..     249     283 ..     241     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
  NAD_binding_9  1 aivGaGprGlavlerLlara.kkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddpptfaeWlr 74
                   a++GaGp Gla+++ + ++   k+ + ++t f+ +    g++w+++  +     ++a   sl t+ p+ +  + +
     CDO70497.1 25 AVIGAGPVGLAAIKIIKDSPeFKAGHWTVTAFEARDNL-GGIWYPAP-PDADPPLTALYDSLTTNTPHPLMSYTS 97
                   89********9998888877999999********9998.89***994.444444444444455555555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1
  NAD_binding_9   2 ivGaGprGlavl 13 
                    +vG+G +G+ v+
     CDO70497.1 208 VVGGGYSGMDVA 219
                    8*******9887 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0036
  NAD_binding_9 121 raevvdleeradgqavlladg.aslaadaVvLAlGh 155
                    r++vv+  ++++g  +  +dg ++  +d+V+LA+G 
     CDO70497.1 249 RGRVVEYLDADEGKVI-FEDGtSENGIDHVILATGY 283
                    6678888888888655.55551567**********7 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.2    0.0079        14       1      33 [.      23      63 ..      23      65 .. 0.67
   2 !    5.9   0.0    0.0046       8.2     162     207 ..     129     172 ..     110     200 .. 0.72
   3 ?    1.7   0.1     0.088   1.6e+02       1      15 [.     205     219 ..     205     236 .. 0.88
   4 !    7.5   0.0    0.0015       2.7     159     218 ..     242     301 ..     239     340 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0079
                EEEEECTSHHHHHHHHHHHHT.T........EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g........Vtllekgdiag 33
                ++++iG+G +Gl++     +  +        Vt +e++d +g
  CDO70497.1 23 HIAVIGAGPVGLAAIKII-KDsPefkaghwtVTAFEARDNLG 63
                79**********976666.32123334467777777776665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0046
                 EEEESECEEEEEE.EETCEEEEE...EECTEEEEEEEEEEE--GGGHHHH CS
         DAO 162 eilegtevtglee.edgkvwgve...rttpgendaadavVnaaGawsdll 207
                 +il++t+v++++  +d k w v    +    e++++d v +a+G++   +
  CDO70497.1 129 HILFNTPVQSVRWnPDAKKWDVTfgcQ----ETRQYDLVLIANGHY--RV 172
                 799*******955477888***66544....2345799******99..34 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.088
                 EEEEECTSHHHHHHH CS
         DAO   1 dvviiGGGiiGlstA 15 
                 +++++GGG+ G+ +A
  CDO70497.1 205 KILVVGGGYSGMDVA 219
                 599********8666 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0015
                 TT-EEEESECEEE.EEEEETCEEEEE..EECT.EEEEEEEEEEE--GGGHH..HH..HTT.CTTTSEEE CS
         DAO 159 lGveilegtevtg.leeedgkvwgve..rttp.gendaadavVnaaGawsd..ll..gll.keldlpis 218
                  G+++ ++ +v++ l++++gk   ++   t++ g    +d+v++a+G + +  +l  + + + l  p s
  CDO70497.1 242 DGGKFKKRGRVVEyLDADEGK--VIFedGTSEnG----IDHVILATGYQFNfpFLsePDVvPSL--P-S 301
                 689999999999956666555..33344433323....7*********9987644322223333..3.3 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.026        46       1      19 [.      23      41 ..      23      65 .. 0.73
   2 !   18.0   0.0   1.8e-06    0.0033       1      25 [.     205     229 ..     205     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.026
                EEEEECSSHHHHHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgala 19
                +++v+G+G +gl + ++++
  CDO70497.1 23 HIAVIGAGPVGLAAIKIIK 41
                79*********98777764 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.8e-06
                 EEEEECSSHHHHHHHHHHHHTTSEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkV 25 
                 k++vvGgGy+g+++A++ + ++k+V
  CDO70497.1 205 KILVVGGGYSGMDVASETRPFAKEV 229
                 79********************999 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06     0.004       1      36 [.      26      67 ..      26      82 .. 0.84
   2 ?    3.0   0.0     0.069   1.2e+02       1      14 [.     208     221 ..     208     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
                   EE--SHHHHHHHHHHH.....CCTE.EEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLa.....kagf.dvlllekrdrlGGraa 36
                   ++GaG  Gl+a   ++     kag+  v+ +e+rd lGG ++
     CDO70497.1 26 VIGAGPVGLAAIKIIKdspefKAGHwTVTAFEARDNLGGIWY 67
                   8***************44333356679************765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.069
                    EE--SHHHHHHHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAyl 14 
                    +vG+G sG+  A++
     CDO70497.1 208 VVGGGYSGMDVASE 221
                    8*******977765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.19      18      44 ..      22      48 ..       8      67 .. 0.74
   2 ?   -1.6   0.0      0.73   1.3e+03      19      33 ..     205     219 ..     200     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                EEEEEE--SHHHHHHHHHHHHCTTS-E CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkv 44
                  ++++GaG+ GL+a +++  +p++k 
  CDO70497.1 22 KHIAVIGAGPVGLAAIKIIKDSPEFKA 48
                5799***************999*9983 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.73
                 EEEEE--SHHHHHHH CS
        Thi4  19 DvvivGaGssGLtaa 33 
                  +++vG+G sG+  a
  CDO70497.1 205 KILVVGGGYSGMDVA 219
                 5899*******9877 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0014       2.4      28      47 ..      21      40 ..       7      45 .. 0.87
   2 ?    3.0   0.0     0.031        55      28      48 ..     203     223 ..     197     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
                 --EEEEESTSHHHHHHHHHH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiata 47
                 + ++ viG+G +Gl+Ai++ 
   CDO70497.1 21 QKHIAVIGAGPVGLAAIKII 40
                 56899************986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.031
                  --EEEEESTSHHHHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatak 48 
                   +k+lv+GgG  G+  ++  +
   CDO70497.1 203 TGKILVVGGGYSGMDVASETR 223
                  589**********99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3123.02
//
Query:       CDO70498.1  [L=592]
Description: hypothetical protein BN946_scf184569.g41, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-74  250.5   0.2    3.3e-73  247.2   0.2    2.1  1  Tannase   Tannase and feruloyl esterase


Domain annotation for each model (and alignments):
>> Tannase  Tannase and feruloyl esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   0.2   1.8e-77   3.3e-73      16     468 ..      87     591 ..      72     592 .] 0.79

  Alignments for each domain:
  == domain 1  score: 247.2 bits;  conditional E-value: 1.8e-77
     Tannase  16 qikfevelPsewngrflqvGgggfagniqtttskaevlskalarGfatagtdaGhdasdadasfa..knpealldfayralkkvtdvakaLvkafygks 112
                     ev+lP  wngr++  G+ggf g +   +      + a+ +G   ++t++Gh++s  d s+a  +n++a++d+++ra++  + ++ka+++++y + 
  CDO70498.1  87 FANTEVWLPDAWNGRMVTIGNGGFGGGVTVSD----LGGIAVPQG---VSTNTGHNSSAVDGSWAgpHNDNAIVDWGWRAVHLSVLAGKAVTEQYYRQP 178
                 55679***********************9998....345677787...799*******9899998899******************************* PP

     Tannase 113 persYfeGcSdGGReglt......aaqRypddydGiiagapalnfvqlalygafsaraeatddldaiisaael.kviakavlaaCDalDgvaDglvqdp 204
                   rsY+ GcS+G +e+l+      a q+  + +  +  g+pa    +l+ +   +   +  + ++++++   + +vi  +v+++CDalDg  Dg+++dp
  CDO70498.1 179 IRRSYYIGCSTG-KESLSnssvhdACQKPSNMHQEVDRGSPANWMTHLQPWSIHMNLNVLPPTSPHFMTRDMWaDVIGPEVMRQCDALDGLKDGIINDP 276
                 **********96.77776333332456767778888888888777999999999999999999999999988736899********************* PP

     Tannase 205 elCklafevesllCeagtgsngdscltaaqvavvaaiyeglknvlssGerlylglevaseetdaagelass...takwelgs.............tvka 287
                 ++C + +e  +l+C  g+  n   clta+q+ ++++iy+++++  ++ + ++ g+   +e+    g l++s   ++   +gs             t + 
  CDO70498.1 277 RACSFRPE--TLTCRPGQ--NASTCLTADQISALHRIYADYYE--ADQTYVFGGYYPGGEDA-FPGGLVGSpplRSP-RTGSggdaeggcsdtqwTMED 367
                 ********..****9988..*********************88..44333333333333333.33333332110333.466677776654322221112 PP

     Tannase 288 esaaeealrnvva.......kfardlnldlsslkl....ealkerkt.tslvelsslidatepdlskfrs..rgGklilyhgtaDpvvspadsikyyes 372
                 +     +   +v        +     n    s+        + + ++ +   +     +a +pdl ++ +  r+Gk+++y g+aD  +sp +s++yye 
  CDO70498.1 368 Y-----NATDIVLgdaidpgQ----SNVSPPSPSPspllTRHPDMTHpDMTPRAPHHPQAIDPDLLAYVAppRNGKVLHYVGWADQLISPGNSLHYYET 457
                 2.....222333344433332....2222222222444444555444044556677889*******9986669************************** PP

     Tannase 373 veaklgad.leeleeFarlylvpGvaHcgggsgtsai.....................................dlLealvdWVEngkaPerlvatkak 433
                 v +   a+   e+++F+rl+lvpG++H  + +    +                                     ++L+a+v WVEng aP+ + ++k++
  CDO70498.1 458 VHESTLANsALEIDDFYRLFLVPGMNHWLSSMQ-HLPmvsmlmsspvdahqggqaanafggvsqprplssdaqhNVLAAMVRWVENGIAPSTITGVKYA 555
                 *988776656789**************998883.3334799********************************************************** PP

     Tannase 434 kek..ksagrtrplcryPkiakykgkgsvekassftc 468
                 +++  + ++ trplc+yP++ +ykg g+ + assf c
  CDO70498.1 556 NDNpaAGVEFTRPLCKYPSTVRYKG-GNPNRASSFDC 591
                 ***6666999***************.*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.49
# Mc/sec: 3655.11
//
Query:       CDO70499.1  [L=668]
Description: hypothetical protein BN946_scf184569.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  149.5   0.0    2.6e-24   85.8   0.0    3.1  3  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.9e-12   5.2e-08      54     261 ..     139     352 ..     110     360 .. 0.79
   2 !   27.7   0.0   6.1e-11   1.1e-06     274     314 ..     400     440 ..     390     446 .. 0.92
   3 !   85.8   0.0   1.5e-28   2.6e-24     325     439 ..     490     608 ..     489     627 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.9e-12
                 HHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHH CS
        p450  54 avkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess...elditellskaa 149
                 + +evl++++ +++ ++ +++l        g +++ ++g++wk++R+++ p++  +   + + +++e +++l++ ++   g ++     +it++   ++
  CDO70499.1 139 DRQEVLGARARFPKPMGPYKVLL-----AFGPNLVASEGDEWKRQRKLVAPAFSEK---NNRLVWDETIRILYDLFDNVWGDRDtilIDNITDITVPIT 229
                 45677777776666666666666.....5999**********************98...8899****************9999977444689999999* PP

                 HHHHHHHHHSSHHHTTTSSH.........HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.SCSS CS
        p450 150 ldvigsilFgarfdlledek.........lselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa.kksr 238
                 l vig   Fg+r+  +ed              +  +  + ++++s + +  +l++++l+ + t+  r+++ a+++l  +++++i  rr   ds  k +r
  CDO70499.1 230 LLVIGVAGFGRRITWNEDAVappghkmtfKVPYAPLSPDALNVVSRNLFYQVLFPRWLLRIGTPGMRRFHTAMRELGAYMQEMIDARRNGGDSVvKGER 328
                 **************8888889999988883345555555555665555555555557889****************************99999988899 PP

                 CSHHHHHHHHCTTCTCT.SSSSHH CS
        p450 239 rdfldalllakkekkge.sklsde 261
                  d+ + ll+a +   ge +kl+d 
  CDO70499.1 329 HDLFSSLLDANEGLAGEgEKLTDV 352
                 **********94444445699985 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 6.1e-11
                 HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-H CS
        p450 274 GvdTtsstlswaLyeLaknPevqeklreEidevlgdkrept 314
                 G++T+++tl++a+++La +P+ qekl+e i+++l+d r+p 
  CDO70499.1 400 GYETSAHTLAYAFILLALYPDEQEKLYEAIKTTLHDGRTPV 440
                 99********************************9999764 PP

  == domain 3  score: 85.8 bits;  conditional E-value: 1.5e-28
                 HHHHHHHHHHSCSSTTEEEEESSSCEEETT.........EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TT CS
        p450 325 davikEtLRlhpvvplllpRevtkdvvirg.........ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiG 414
                 d v +EtLRl p+v  ++p++  + +++             +pkGt v + + +lh +p ++++Pe F+peRFl  +     + +aflPF+ GpR  iG
  CDO70499.1 490 DSVFNETLRLFPPVI-SIPKQSAEHTSFTTtnaagatrmIPVPKGTFVTIHTPGLHSNPRYWDEPEAFRPERFLGGRY----NRDAFLPFSGGPRGAIG 583
                 5799***********.99999999777754445558888899**********************************76....78*************** PP

                 HHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 415 erlArmelklflatlLqnFevelqp 439
                 +++ + e   +l++++++++ve+ +
  CDO70499.1 584 RGFSETESIAVLTLVVSRYRVEVRD 608
                 **********************843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4680.97
//
Query:       CDO70500.1  [L=472]
Description: hypothetical protein BN946_scf184569.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3178.19
//
Query:       CDO70501.1  [L=1027]
Description: hypothetical protein BN946_scf184569.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-47  162.4   1.5    3.9e-22   78.7   0.0    3.1  3  p450           Cytochrome P450
    7.4e-39  133.6   0.0    4.3e-28   98.0   0.0    2.7  2  FMO-like       Flavin-binding monooxygenase-like
    1.5e-13   50.7   0.1    1.7e-10   40.6   0.0    3.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      9e-08   31.6   0.0    5.3e-06   25.8   0.0    3.0  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    4.5e-07   29.4   0.0    2.5e-06   27.0   0.0    2.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0001   22.3   1.2       0.79    9.7   0.0    4.7  5  NAD_binding_9  FAD-NAD(P)-binding
    0.00017   21.8   0.1     0.0014   18.8   0.0    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.052   12.8   0.0       0.47    9.7   0.0    2.1  2  Thi4           Thi4 family
       0.28   10.4   1.2         11    5.2   0.1    2.4  2  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.6e-07   0.00051      49     163 ..     147     256 ..     135     265 .. 0.72
   2 !   62.1   0.4     2e-20   4.1e-17     214     317 ..     269     371 ..     265     381 .. 0.89
   3 !   78.7   0.0   1.9e-25   3.9e-22     356     440 ..     388     467 ..     382     487 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.6e-07
                 EESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHH. CS
        p450  49 lsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagesselditells. 146
                 + ++  vke+   +    ++ p++ +l+ +  ++ g ++l+++ge wk++R++  p++      +++ +++e ++++ ++++   g +++++i ++l  
  CDO70501.1 147 VADAVVVKEIISSQ----ARFPKMTQLYDL-LATFGSNILVTEGEVWKRQRKIAAPAFSER---NYRLVWDETIRIVEDMFQNVWGDKDVVEIPHVLDi 237
                 45555667777777....455566666664.4889************************88...99999999999999999999988885555444331 PP

                 ..HHHHHHHHHHHHSSHHH CS
        p450 147 ..kaaldvigsilFgarfd 163
                    ++l vig   Fg+r++
  CDO70501.1 238 tvGITLLVIGVAGFGRRIS 256
                 1144555566666666665 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 2e-20
                 HHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT CS
        p450 214 kklkdlldklieerretldsakksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr 311
                 +++k +l++++++rr+   ++  +r d+ + ll+a   e ++++kl+d el  +v+ +l+aG++Tt++tl++a+++La +++ qek +++i++vl +++
  CDO70501.1 269 MTFKTYLKEMVQDRRSAKVKE--KRHDLFSNLLDANeGELDNDAKLTDSELLGNVFIFLVAGYETTAHTLAYAFILLALYQDEQEKFYQNIKSVLLSDQ 365
                 68999****************..9***********976666668***************************************************7778 PP

                 T-HHHH CS
        p450 312 eptydd 317
                 +p+ ++
  CDO70501.1 366 TPESAE 371
                 887665 PP

  == domain 3  score: 78.7 bits;  conditional E-value: 1.9e-25
                 EE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 356 lipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                  +p G+ + +++ alh +p ++++Pe F+peRFl +      + +aflPF+ G+R C+G+++A+ e   +l+t++++++ve+ +e
  CDO70501.1 388 PVPRGSYIGICTRALHFNPRYWDDPEAFKPERFLGN-----YHRDAFLPFSGGARGCVGRGFAETESVAVLSTIISRYRVEVLEE 467
                 689*******************************99.....579*************************************9875 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   2.1e-31   4.3e-28       2     214 ..     514     733 ..     513     737 .. 0.85
   2 !   32.8   0.0   1.3e-11   2.5e-08     289     420 ..     738     890 ..     731     902 .. 0.63

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 2.1e-31
    FMO-like   2 kkvaviGaGvsGlasikccle.....egl.eptcfersddiGGlwrfkenvee.Grasiyksvvsnsskemscfsdfplpedypnflhnsklleylklf 93 
                 +++ v+GaG +Gla++k   +     +gl   t fe  +diGG+w     + +   + +y s+ +n    ++ +s f +p   p f + s +l y+k +
  CDO70501.1 514 RNICVVGAGPAGLAAVKIIKDsqqfkDGLwTVTAFEARNDIGGIWLPAPPTGDpPLTPLYDSLTTNLPHPVMAYSSFSFPLSTPLFPPASTVLTYMKDY 612
                 5799************987652222267734689***********9887665526899***************************************** PP

    FMO-like  94 akefdllkyiqfkttvcsvkkrpdfstsGqwevvte..kegkkesavfdavmvctGhhvnphlplesfpGiekf..kGqyfhsrdykepevfkgkr.vl 187
                 a +fdl+ +i+++++v+s ++    +++ +w v+t   k + +e+  f+ ++v  Gh+  p lp    pG+ ++    + fh+  y++p+ f   r vl
  CDO70501.1 613 AAHFDLMPHIRLNAHVVSATRD---AATERWTVTTYysKTNTHETGTFNHIIVANGHYRIPRLPD--TPGLSRWldAKKAFHAVYYRNPSDFGKARtVL 706
                 ****************998874...56889****9722456678899*****************6..5****98434589************6654499 PP

    FMO-like 188 viGlGnsggdiavelsrtaeqvllstr 214
                 v+G G sg d+ ++l  + + v+ s +
  CDO70501.1 707 VVGAGPSGQDLCTDLLASGRTVVHSVT 733
                 **************9988888877755 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 1.3e-11
    FMO-like 289 arilaGavkvkssvkel...tetsaifedgtveedidvvifatGytfafpfleeslvkve.............kn..kvs.lykkvfp....anlekpt 364
                 +++l G +kv+++v ++   te  ++f+dg+ e +id+ ++atGy  +fpfl   +v+ +             +   +v+ l +++fp     +l  ++
  CDO70501.1 738 ESMLDGSLKVRGRVAKYlepTEGRILFDDGSEETGIDCAVLATGYKVSFPFLPADIVRQTlsppvpplprnlyNStyHVFpLARHIFPfvdeNTLPASS 836
                 57899********986633378899***************************99988754111111111111111001111334555522222344455 PP

    FMO-like 365 laiiGliqplGsilptvelqarwavrvlkGlkklpsekelleeitekkekkakrfg 420
                 +a iGl   + + lp  e q r + +v+     l ++ke + +i+++ e  +++++
  CDO70501.1 837 IAFIGLP-IRVAPLPLLEAQMRAVLHVFAKPESLDPTKEAI-DIIARFEILRSHVV 890
                 6666663.344567777777777777777777777776665.45555565555555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0057        11       2      19 ..     518     535 ..     517     542 .. 0.84
   2 !   40.6   0.0   8.7e-14   1.7e-10      77     219 ..     599     756 ..     576     802 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0057
  Pyr_redox_3   2 IiGaGPaGlaaaielkka 19 
                  ++GaGPaGlaa   +k++
   CDO70501.1 518 VVGAGPAGLAAVKIIKDS 535
                  8*********98777765 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 8.7e-14
  Pyr_redox_3  77 klsrkealeYlrevaksfel..piklfeeVesvkk..edegfevetsketyeAk......kviiAtGefdkPnklnipGeek.....lvkhyskvkef 159
                   + + ++l Y++ +a++f+l  +i+l+ +V s ++  + e  +v+t  ++ +++      ++i+A G + +P++++ pG ++     ++ h  +++++
   CDO70501.1 599 FPPASTVLTYMKDYAAHFDLmpHIRLNAHVVSATRdaATERWTVTTYYSKTNTHetgtfnHIIVANGHYRIPRLPDTPGLSRwldakKAFHAVYYRNP 696
                  56678899************777*********99943457799*99655444432222229******************87433333788999***** PP

  Pyr_redox_3 160 hkya.gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrle 219
                  +++   + v+V+G++ S+ D  ++l + g +V   + g++ e++  d s +++ ++ + le
   CDO70501.1 697 SDFGkARTVLVVGAGPSGQDLCTDLLASGRTVVHSVTGATNESM-LDGSLKVRGRVAKYLE 756
                  **97467899**********************999999865554.6888888888877776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.18   3.5e+02     186     205 ..     508     527 ..     497     548 .. 0.70
   2 !   25.8   0.0   2.7e-09   5.3e-06     100     220 ..     607     730 ..     591     747 .. 0.77
   3 ?    0.8   0.0      0.11   2.2e+02     323     341 ..     765     783 ..     759     784 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.18
  K_oxygenase 186 eellakkriaVvGsGqSaae 205
                  ++++++++i VvG+G  +  
   CDO70501.1 508 RQNESRRNICVVGAGPAGLA 527
                  45778999999999865543 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 2.7e-09
  K_oxygenase 100 dYlrWvasqle..eqvrfgeeveevepdeeeeeelltveskd.aegeeeelearnlvlgvG..tepkiPev..leklegkervvHsseylerkeella 190
                   Y++  a++++   ++r +++v + + d+++  e++tv++   +++++e+ + ++++++ G    p +P++  l +  + ++ +H+  y +   +  +
   CDO70501.1 607 TYMKDYAAHFDlmPHIRLNAHVVSATRDAAT--ERWTVTTYYsKTNTHETGTFNHIIVANGhyRIPRLPDTpgLSRWLDAKKAFHAVYYRNPS-DFGK 701
                  6889999999943346667777766666665..678888766578888888999*******66679999875555666789****99998887.799* PP

  K_oxygenase 191 kkriaVvGsGqSaaeifedllrrqkkvelk 220
                  +++++VvG+G S+ +++ dll++ ++  ++
   CDO70501.1 702 ARTVLVVGAGPSGQDLCTDLLASGRT-VVH 730
                  *********************98663.334 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.11
  K_oxygenase 323 sgeeetlevdavvlATGYr 341
                  ++ +e++ +d+ vlATGY+
   CDO70501.1 765 DDGSEETGIDCAVLATGYK 783
                  56778999**********7 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.2e-09   2.5e-06       2     168 ..     515     729 ..     514     794 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.2e-09
                  SEEEE--SHHHHHHHHHHHH......HTS-EEEEE............TTHCHHHCSHHH....HCHHHHHHHHHHHHH.................... CS
                  xxxxxxxxxxxxxxxxxxxx......xxxxxxxxx............xxxxxxxxxxxx....xxxxxxxxxxxxxxx.................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq......agakvtlve............legtclnggcll....skallgvaedaeias.................... 57 
                  +++v+G+GpAGlaa + ++           vt +e                 ++g+++l     +  ++ +++    s                    
   CDO70501.1 515 NICVVGAGPAGLAAVKIIKDsqqfkdGLWTVTAFEarndiggiwlpaP----PTGDPPLtplyDSLTTNLPHPVMAYSsfsfplstplfppastvlty 608
                  799************999997666433456777766666666654441....3444444111144444444444433388899999******999988 PP

                  ........HHHHCHHHHCCCCHCCTCEEEEESC....EEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS- CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ........evvkklnqgielllgeevvkidpgk....kkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkll 141
                          +    l  +i+  l+++vv+  +++     +v+   +k++ +e+ +++++++A G    pr++++pG+   + +  ++++ + + +    
   CDO70501.1 609 mkdyaahfD----LMPHIR--LNAHVVSATRDAaterWTVTTYYSKTNTHETGTFNHIIVANGHyrIPRLPDTPGL-SRWLDAKKAFHAVYYRNPSDF 699
                  887763331....333333..333455555444110024555555559999************6557888899999.555555455555444444444 PP

                  T..SEEEEES-SHHHHHHHHHHHHHT-E.E CS
                  x..xxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2 142 p..krivvvGgGyiGvElAaalaklgke.v 168
                     + ++vvG+G+ G +l+  l   g   v
   CDO70501.1 700 GkaRTVLVVGAGPSGQDLCTDLLASGRTvV 729
                  488899**************9888877533 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.5   8.9e+03      86     105 ..     411     430 ..     409     437 .. 0.84
   2 !    9.7   0.0    0.0004      0.79       2      45 ..     518     561 ..     517     565 .. 0.83
   3 ?    2.6   0.0      0.06   1.2e+02      90     155 ..     599     666 ..     590     667 .. 0.65
   4 ?    3.9   0.0     0.024        47       2      20 ..     707     725 ..     706     734 .. 0.85
   5 ?   -0.0   0.0      0.39   7.8e+02     121     155 ..     748     782 ..     736     783 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
  NAD_binding_9  86 dpddfvpRalyGrYlrdlfe 105
                    dp++f p +++G Y rd+f 
     CDO70501.1 411 DPEAFKPERFLGNYHRDAFL 430
                    578999999*******9986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0004
  NAD_binding_9   2 ivGaGprGlavlerLlara.kkkspleitlfdpsepgagrvwrtd 45 
                    +vGaGp+Gla+++ + +++  k+   ++t f+ ++   g++w ++
     CDO70501.1 518 VVGAGPAGLAAVKIIKDSQqFKDGLWTVTAFEARNDI-GGIWLPA 561
                    9*********9998888886667779*******8777.7899765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.06
  NAD_binding_9  90 fvpRalyGrYlrdlfeellarlpegvtvevhraevvdleera....dgqavlladgaslaadaVvLAlGh 155
                    f+p + +  Y++d+++++   l  +++++ h  ++++ + ++    ++++  +++ ++ +++++++A Gh
     CDO70501.1 599 FPPASTVLTYMKDYAAHFD--LMPHIRLNAHVVSATRDAATErwtvTTYYSKTNTHETGTFNHIIVANGH 666
                    7777777788888888876..55567777766666643332212223344555666777**********9 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.024
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    +vGaGp+G  +++ Lla+ 
     CDO70501.1 707 VVGAGPSGQDLCTDLLASG 725
                    8***************985 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.39
  NAD_binding_9 121 raevvdleeradgqavlladg.aslaadaVvLAlGh 155
                    r++v +  e  +g+ +l +dg +++ +d  vLA+G 
     CDO70501.1 748 RGRVAKYLEPTEGR-ILFDDGsEETGIDCAVLATGY 782
                    55555555555555.4555552778*********96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.3e-07    0.0014       1      33 [.     518     556 ..     518     567 .. 0.84
   2 ?   -0.5   0.1      0.77   1.5e+03       1       8 [.     707     714 ..     707     729 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.3e-07
                    EE--SHHHHHHHHHHHCC.....TE.EEEEE-SSSSSSG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka.....gf.dvlllekrdrlGG 33 
                    +vGaG +Gl+a   +++      g+  v+ +e+r+++GG
     CDO70501.1 518 VVGAGPAGLAAVKIIKDSqqfkdGLwTVTAFEARNDIGG 556
                    8**************963323336688***********9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.77
                    EE--SHHH CS
  NAD_binding_8   1 IvGaGlsG 8  
                    +vGaG sG
     CDO70501.1 707 VVGAGPSG 714
                    8******9 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00023      0.47      18      58 ..     514     558 ..     500     561 .. 0.73
   2 ?    0.2   0.0      0.18   3.6e+02      19      30 ..     704     715 ..     686     728 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
                 EEEEEE--SHHHHHHHHHHHHCTTS-.....EEEEESSSS--TTTT CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlk.....vailersvspGGGaw 58 
                  ++ +vGaG++GL+a +++  + ++k     v+ +e++  +G G+w
  CDO70501.1 514 RNICVVGAGPAGLAAVKIIKDSQQFKdglwtVTAFEARNDIG-GIW 558
                 5799**************988766664433356667666664.455 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.18
                 EEEEE--SHHHH CS
        Thi4  19 DvvivGaGssGL 30 
                  v++vGaG+sG 
  CDO70501.1 704 TVLVVGAGPSGQ 715
                 589*******95 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0054        11       3      17 ..     515     529 ..     513     534 .. 0.84
   2 ?    3.6   0.2     0.016        31       3      23 ..     704     724 ..     702     737 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0054
                    EEEEE--SHHHHHHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmla 17 
                    ++++VGaGpaGl + 
     CDO70501.1 515 NICVVGAGPAGLAAV 529
                    579*********985 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.016
                    EEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLsea 23 
                    +Vl+VGaGp+G  l + L   
     CDO70501.1 704 TVLVVGAGPSGQDLCTDLLAS 724
                    69*********8776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.52
# Mc/sec: 5996.01
//
Query:       CDO70502.1  [L=956]
Description: hypothetical protein BN946_scf184569.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-82  276.4  25.5    3.7e-82  275.7  25.5    1.4  1  RSN1_7TM   Calcium-dependent channel, 7TM region, putative ph
    1.2e-37  129.0   5.0    6.4e-37  126.7   5.0    2.3  1  RSN1_TM    Late exocytosis, associated with Golgi transport
    6.2e-32  111.2   0.0    1.1e-30  107.2   0.0    2.2  1  PHM7_cyt   Cytosolic domain of 10TM putative phosphate transp
    6.7e-13   48.6   1.0    1.5e-12   47.5   0.2    2.0  2  PHM7_ext   Extracellular tail, of 10TM putative phosphate tra
     0.0056   15.6   0.4     0.0056   15.6   0.4    3.0  3  Anoctamin  Calcium-activated chloride channel
  ------ inclusion threshold ------
       0.27   11.1   1.7         11    5.9   0.1    2.6  2  TarH       Tar ligand binding domain homologue


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.7  25.5   1.2e-85   3.7e-82       1     274 []     459     734 ..     459     734 .. 0.99

  Alignments for each domain:
  == domain 1  score: 275.7 bits;  conditional E-value: 1.2e-85
    RSN1_7TM   1 rklivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaF 99 
                 r+ i++++++ lii+w+ipvaf+g++sn+ +l +++++l+++++l+  ++++++g+lP++ll+++++llpiilrll++++G++ r+++els++++yf+F
  CDO70502.1 459 RTAISWAVTIGLIIVWAIPVAFIGAVSNVHSLCSTYSWLAWLCDLPAVIVGIISGILPPALLAIINLLLPIILRLLARFEGVTQRTTIELSLMTRYFLF 557
                 5678999******************************************************************************************** PP

    RSN1_7TM 100 lvvnvFlvftlagtalslleeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygtey 198
                 +v+n Flv+t++++++++l ++++np sip+lla++lpkasnFf+tyi+lqgl+g+a  +lq+v+l+l+++k  +l++tpr +++ ++++ s+ +gt +
  CDO70502.1 558 QVINSFLVVTFSSGIIAALPDLVNNPASIPSLLAKNLPKASNFFLTYIILQGLSGTASGFLQVVPLVLYYVKLFILGSTPRSIYNIKYTLRSVAWGTLF 656
                 *************************************************************************************************** PP

    RSN1_7TM 199 pkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvyd.tky.esgGklwpralnrllvglvlfqllliglf 274
                 p ++l++vi+++Ys+i+P+i  +++++f+l y +yky +l++ d +k+ e+gG ++p+a+++l+vgl+l q++l++lf
  CDO70502.1 657 PSISLLVVITVAYSIISPIINGLSMATFFLFYQMYKYLFLWQLDgQKTgETGGLFFPKAIQHLFVGLYLQQICLAALF 734
                 ********************************************99999*************************9997 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   5.0   2.1e-40   6.4e-37       2     155 ..      26     175 ..      25     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 2.1e-40
     RSN1_TM   2 lltslvinlvlalvflllFlilRkknkrvYaprtylkgeeertpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavlalivL 100
                 ++t+l++n++++++ l +F ++R+ ++ +Y+prty  ++ +r+ +l  k++f W +a+++++ +ei +k+G+Day+f+rfl+m+++i+++++++++i+L
  CDO70502.1  26 FVTALIFNAAVFGIELGIFTLVRPFFPAIYQPRTYIPPKGRRAAELT-KNMFLWPWAVFTTNYHEIRTKVGMDAYFFVRFLRMMVRILVPIWLVSWIIL 123
                 89**********************************86666666555.*************************************************** PP

     RSN1_TM 101 lPvnatggegedskesksgldklsisnvs.egsnrlwahvvvayiftglvlyllyr 155
                 lP+  + ++g +     +gld+++++nv+ ++++r+ ah+++a++ft+++ + + +
  CDO70502.1 124 LPITGARSDGAGL----TGLDRFTFGNVPaTQQSRYAAHLILAWFFTVWIWWNIRH 175
                 ****999999965....69**********99999****************998866 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   3.6e-34   1.1e-30       2     176 .]     200     448 ..     199     448 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 3.6e-34
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkr........................ 76 
                  Tvl+tg+P++++se +l+++f++l pg v ++v+++rd+k++++++++r+ka++kle a++ ++ ++ kl++kr                        
  CDO70502.1 200 STVLITGVPRNYLSESALRKLFSHL-PGGV-RKVWLNRDLKDMPDVYDRRQKAAQKLESAETSLLNTAVKLHNKRlkaeaksakkndsrksidtgnndg 296
                 59*********************97.8887.*************************************9999999************************ PP

    PHM7_cyt  77 ............................pthklgfl.....glkligkkvdaidyyrekleeldeeieeerekv.....kkkp................ 121
                                             pth+l ++      l l+gkkvd+i++ r++l e+++ ++e+r+       +                   
  CDO70502.1 297 rpltdpsiadveqgdislaeklvpknkrPTHRLPLFswmpfSLPLVGKKVDSIEWARQELAETNKALREARRALardvaT--Ssslpeaqtnhpdalkg 393
                 ****************************88888855444447889***************************87554441..04566778888999999 PP

    PHM7_cyt 122 ..........lgaaFvtfesersaaavakqakcaaqiqqssnptl.kpkkwtvelAPePrDviWeN 176
                           l++aFv f+++  aa++a      aq+ +++ p   ++k++ v     P+DviW N
  CDO70502.1 394 dpgssqtyppLNSAFVLFNKQ-IAAHMA------AQVLTHHMPYRmASKNVGVA----PDDVIWGN 448
                 99***99999*********76.555563......78899999988888999996....******99 PP

>> PHM7_ext  Extracellular tail, of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.5   7.5e+03      24      41 ..     785     811 ..     762     817 .. 0.49
   2 !   47.5   0.2   4.9e-16   1.5e-12      26      92 ..     884     951 ..     874     952 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
    PHM7_ext  24 e........eeeyeeelekka.YlhPa 41 
                           ++ ++el++ a Y +P 
  CDO70502.1 785 AsytasdpnVTQATQELDDAAsYQEPK 811
                 433333332233444444444477776 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 4.9e-16
    PHM7_ext  26 eeyeeelekkaYlhPavtskepllWiprDpagvSkqeieetek.vigisdegaeldekgkvewteaPp 92 
                  +++e+   k ++hPa  +++p++WiprDp+g+++ e ++++  +i++s++ a +d kg+v++++aPp
  CDO70502.1 884 VPVDEDAGPKDFYHPASVEPQPVIWIPRDPLGLAEAEERAIRAaGIKVSTKDAIMDGKGHVDIHGAPP 951
                 56788888999**************************99888736799*******************9 PP

>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.27   8.1e+02     337     365 ..     161     189 ..     155     193 .. 0.86
   2 !   15.6   0.4   1.9e-06    0.0056     123     216 ..     462     566 ..     447     578 .. 0.67
   3 !    3.5   1.4    0.0089        27     120     210 ..     664     762 ..     634     775 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.27
   Anoctamin 337 apllallnniieirldafklvtelrRpvp 365
                  + ++ ++ + +ir ++  +vt  +R + 
  CDO70502.1 161 LAWFFTVWIWWNIRHEMKHFVTTRQRWLI 189
                 578999*******************9765 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.9e-06
   Anoctamin 123 vslplvl.lliclavvgvlilrclalqelvssvke...........llsflptvlnlvlililnevykklaiwltdlEnhrtqseyekslilKvflfqf 209
                 +s ++++ l+i+ a+ + +i ++  + +l s+  +           ++ +++ +l   l+ i+n +   + + l ++E     ++ e sl+++ flfq+
  CDO70502.1 462 ISWAVTIgLIIVWAIPVAFIGAVSNVHSLCSTY-SwlawlcdlpavIVGIISGILPPALLAIINLLLPIILRLLARFEGVTQRTTIELSLMTRYFLFQV 559
                 333333212222233333333322333333322.2466666654444448888888888999999999999**************************** PP

   Anoctamin 210 vnsylsl 216
                 +ns+l +
  CDO70502.1 560 INSFLVV 566
                 ****976 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0089
   Anoctamin 120 rllvslplvl.....lliclavvgvlilrclal.qelvssvkells....flptvlnlvlilil.nevykklaiwltdlEnhrtqseyekslilKvflf 207
                  + v  +++      l +++++++  ++++l l q   +++    +    f+p++++ +++ +  +++      +l + En++     e +l++ +++f
  CDO70502.1 664 VITVAYSIISpiingLSMATFFLFYQMYKYLFLwQLDGQKTG---EtgglFFPKAIQHLFVGLYlQQICLAALFFLAQDENQKASAVPEGALMIVLIVF 759
                 333444333343334334557777888887776332222222...2345799998886666554499**9999**********9999999999999888 PP

   Anoctamin 208 qfv 210
                 +++
  CDO70502.1 760 TAF 762
                 765 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0038        11      33      83 ..     233     280 ..     224     292 .. 0.81
   2 ?    3.6   0.2     0.018        54      50      75 ..     352     376 ..     344     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0038
                 HHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS CS
        TarH  33 lsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaeda 83 
                 l+r+  ++ +vy  r +++++L +a++sll++ ++L       l++ea+ a
  CDO70502.1 233 LNRDLKDMPDVYDRRQKAAQKLESAETSLLNTAVKLHN---KRLKAEAKSA 280
                 788999999******99*******************98...5555555544 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        TarH  50 qqaaLaearvsllqaRltLnragiaa 75 
                 ++++Lae++ +l +aR +L r  +a+
  CDO70502.1 352 ARQELAETNKALREARRALAR-DVAT 376
                 789******************.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6568.00
//
Query:       CDO70503.1  [L=479]
Description: hypothetical protein BN946_scf184569.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-08   34.9   0.1    3.3e-08   33.3   0.1    2.0  1  F-box-like  F-box-like
    0.00094   19.0   0.1     0.0039   17.0   0.1    2.0  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   3.7e-12   3.3e-08       2      36 ..      20      56 ..      19      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.7e-12
  F-box-like  2 srLPdEiLlqIFsy..LppsdLlrlalVCrrWrrval 36
                 +LP E+L  IF +  ++ ++++++++VCr+Wr val
  CDO70503.1 20 GHLPVELLHVIFGHfhRDRETITACSCVCRQWRAVAL 56
                69**********962257779**************94 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.3e-07    0.0039       5      35 ..      21      53 ..      19      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.3e-07
                HS-HHHHHHHHHTS-HHH..HHHHCTT-HHHHH CS
       F-box  5 rLPsevlrhILerLplsd..llalrrVSkgwri 35
                 LP e+l+ I+ +       + a+++V++ wr 
  CDO70503.1 21 HLPVELLHVIFGHFHRDRetITACSCVCRQWRA 53
                59***********8877799************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3429.31
//
Query:       CDO70504.1  [L=105]
Description: hypothetical protein BN946_scf184569.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-08   32.6   0.2    8.7e-08   31.9   0.2    1.4  1  F-box-like    F-box-like
     0.0024   17.7   0.8      0.005   16.7   0.8    1.6  1  F-box         F-box domain
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.083   12.9   0.0    1.7  1  F-box-like_2  F-box-like domain
      0.065   13.4   0.0       0.11   12.7   0.0    1.3  1  TPR_9         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.2   1.9e-11   8.7e-08       1      36 [.      21      58 ..      21      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.9e-11
  F-box-like  1 isrLPdEiLlqIFsyL.pps.dLlrlalVCrrWrrval 36
                i++LP E+L  IF++  +++ d ++++  Cr+Wr+val
  CDO70504.1 21 IADLPMELLYFIFHHAsEDQkDVSACSSICRKWRDVAL 58
                689**********99754445****************6 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   1.1e-06     0.005       3      36 ..      21      56 ..      19      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
                HHHS-HHHHHHHHHTS-HHH..HHHHCTT-HHHHHH CS
       F-box  3 lsrLPsevlrhILerLplsd..llalrrVSkgwril 36
                + +LP e+l  I+ + +     + a+++ +++wr++
  CDO70504.1 21 IADLPMELLYFIFHHASEDQkdVSACSSICRKWRDV 56
                6799999999999997777799************96 PP

>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05     0.083      16      42 ..      15      41 ..       5      96 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
  F-box-like_2 16 kfrsltllDlPdellelifkgCkdpay 42
                    ++  + DlP ell  if++  +++ 
    CDO70504.1 15 TSQRTGIADLPMELLYFIFHHASEDQK 41
                  678999**************9875543 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.4e-05      0.11      30      65 ..      51      88 ..      47      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
       TPR_9 30 eerrdRGl..llaqlGclsaAladLeaylalapdapda 65
                + +rd +l  +la l  l+++++dL +++++ p+ p++
  CDO70504.1 51 RKWRDVALphVLATLKVLHQERQDLVQFVDNRPHVPQR 88
                789****98899*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 800.69
//
Query:       CDO70505.1  [L=359]
Description: hypothetical protein BN946_scf184569.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-28   96.4   1.0    1.5e-27   95.6   1.0    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    8.6e-28   96.9   2.2    1.5e-27   96.2   2.2    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.5e-05   25.4   0.3    4.3e-05   24.6   0.3    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.06   12.8   1.8       0.12   11.8   1.2    2.0  2  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   1.0   3.4e-31   1.5e-27       1     108 [.      39     149 ..      39     150 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 3.4e-31
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS..--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSB CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk..lkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfa 96 
                 pge l+++ ++g+C++Dlh  +g++ +++klpli GHE vG ++++g+++++  +k+GdrV +++l   c +C+ C++g e+ C ++k+ g+++dG+f+
  CDO70505.1  39 PGECLVELDCSGVCHTDLHARQGDWPIQAKLPLIGGHEGVGRIVAIGEHTQDspVKIGDRVGIKWLAYsCLDCEPCRKGLEQSCLKGKYSGFTVDGTFS 137
                 5799**********************************************9999**********98766****************************** PP

                 SEEEECGGGEEE CS
       ADH_N  97 eyvvvpekklvk 108
                 +yvv   +++ +
  CDO70505.1 138 QYVVSWVTHVTP 149
                 ***988777765 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   2.2   3.3e-31   1.5e-27       1     129 [.     192     321 ..     192     322 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 3.3e-31
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeef 97 
                 g+G++avq+A a+G +v+avd  +ek el+ klGa+  i+ ke+ dlv++i ++t+g g+++++ ++++g+++ +a+++l+ gG+l+vvG+      + 
  CDO70505.1 192 GLGHLAVQYAVAMGLRVVAVDTGAEKKELCLKLGAEKWIDFKETkDLVKDIIAATDGYGAHAAVVTAATGSAYAQAIDYLRMGGTLMVVGLpARASLSA 290
                 89*****************************************************************************************76666779 PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdlla 129
                 d++  + k+++i+Gs +g+ r++ +eald++a
  CDO70505.1 291 DIFFTVTKSITIVGSYVGN-RQDAREALDIAA 321
                 999999*************.*******99865 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.3   9.7e-09   4.3e-05       1     133 []     224     355 ..     224     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 9.7e-09
                   TT-SEEEETT.STTHH....HHH-TT-EEEEEES-H.HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe....aatggegvDvvldtvg.gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadi 89 
                   lGA++ id + t+d++    aat+g g  +++ t++ g a+ ++++++l+ gG+l ++g p ++a l++  ++  ++s++++       +  +++d 
    CDO70505.1 224 LGAEKWIDFKeTKDLVkdiiAATDGYGAHAAVVTAAtGSAY-AQAIDYLRMGGTLMVVGLP-ARASLSADIFFTVTKSITIVGS-----YvgNRQD- 312
                   89*****9999999999***999998888888888856666.9999***998**9998853.4444444444444444444444.....1444788. PP

                   HHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  90 leelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                    +e ++  + Gk++   +   +l+ +ae ++ l++g+ +G++Vl
    CDO70505.1 313 AREALDIAARGKVKCYYQ-LKSLSSLAETYEGLAEGKIVGRVVL 355
                   9*************9997.789*********************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.2   2.8e-05      0.12       2      42 ..     183     223 ..     182     271 .. 0.86
   2 ?   -2.4   0.0       0.6   2.7e+03       3      31 ..     253     281 ..     251     289 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.8e-05
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevak 42 
                 +++  Ga++G+G+  ++  +++G +vv+vd  +ek e ++k
  CDO70505.1 183 WIVLPGAGGGLGHLAVQYAVAMGLRVVAVDTGAEKKELCLK 223
                 57888**************************9998855544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.6
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEE CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvd 31 
                 + v+ a+ G  +a a  ++++G +++vv+
  CDO70505.1 253 AAVVTAATGSAYAQAIDYLRMGGTLMVVG 281
                 55666666889999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2496.53
//
Query:       CDO70506.1  [L=373]
Description: hypothetical protein BN946_scf184569.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-53  182.3   0.0    1.7e-53  182.0   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   9.6e-58   1.7e-53     204     437 ..      85     320 ..      40     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 9.6e-58
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC..TTCTCTSSSSHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH CS
        p450 204 kllrklkeavkklkdlldklieerretldsakksrrdfldalllak..kekkgesklsdeel.aatvlellfaGvdTtsstlswaLyeLaknPevqekl 299
                 +++r++ +   ++  l ++ + + ++++ +   +    ++a ll+   +ek+   ++s+e++ ++ ++  ++ G dTt s ++ +++ +  +P+ q+  
  CDO70506.1  85 SFKRDAAKWEPDVLALRNAAFDNVKREMAQG--TALPSIAASLLENalQEKSSAGTISQEDMfRNITGIAYLTGADTTFSSVQAFFLAMTMHPDKQRLA 181
                 4455566666677777888888888888888..455555555555547555555689999982455567799*************************** PP

                 HHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS..CTE CS
        p450 300 reEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg..nsk 396
                 + E+d v+g +r p ++d++ lpy++a ikE +R h+vvpl++p+e+t d +i+g lipkGt+ i+n +a+ rd++ +pnPe+F peRFl++    +s 
  CDO70506.1 182 QAELDAVVGPNRLPAFSDRAALPYVNALIKECFRWHNVVPLGIPHETTADEEINGWLIPKGTVLIPNQWAMARDETAYPNPERFLPERFLKDGLlnPS- 279
                 ********************************************************************************************779555. PP

                 SSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEE CS
        p450 397 rksfaflPFGaGpRnCiGerlArmelklflatlLqnFevel 437
                 + + +  +FG+G+R+C+G+++A   ++++++++L+ F++ +
  CDO70506.1 280 VRDPQKYAFGFGRRICPGRHFADASMFIIVSSVLHAFDIAP 320
                 77788889*****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2355.38
//
Query:       CDO70507.1  [L=206]
Description: hypothetical protein BN946_scf184569.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-09   37.9   0.1    4.4e-09   36.4   0.1    1.9  1  Spindle_Spc25   Chromosome segregation protein Spc25
     0.0045   16.6   6.6     0.0056   16.3   6.6    1.1  1  CENP-K          Centromere-associated protein K
  ------ inclusion threshold ------
      0.033   13.1  13.1      0.041   12.8  13.1    1.0  1  DUF812          Protein of unknown function (DUF812)
      0.062   13.0   0.9       0.11   12.2   0.9    1.3  1  TPP_enzyme_M_2  Middle domain of thiamine pyrophosphate
       0.19   12.0   3.3       0.29   11.4   3.3    1.3  1  MecA_N          NTF2-like N-terminal transpeptidase domain
       0.26   10.2  15.3       0.48    9.3  15.2    1.4  2  Spc7            Spc7 kinetochore protein
       0.38   11.2  17.4       0.21   12.0  15.3    1.6  1  DUF4200         Domain of unknown function (DUF4200)
       0.47   11.0  14.2       0.26   11.8  12.3    1.5  1  APG6_N          Apg6 coiled-coil region
        1.2    8.5  12.7        1.5    8.1  12.7    1.1  1  DUF4407         Domain of unknown function (DUF4407)
        1.3    9.1   5.5        3.9    7.5   5.5    1.8  1  DUF1664         Protein of unknown function (DUF1664)
        2.2    7.4   5.6        2.9    7.1   5.6    1.3  1  TMPIT           TMPIT-like protein
        2.5    7.3  11.9        4.4    6.5  11.2    1.7  1  DUF3450         Protein of unknown function (DUF3450)
          3    8.2   9.4    1.6e+02    2.6   9.4    2.4  1  Spc24           Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> Spindle_Spc25  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   3.2e-12   4.4e-09       2      35 ..     172     205 ..     171     206 .] 0.95

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.2e-12
  Spindle_Spc25   2 ieedklkfvFtnidpkdperefsftLdvsedtye 35 
                    i++dk+ ++Ft+idp d +refsf+Ldvs+++y+
     CDO70507.1 172 IDKDKILVRFTHIDPVDLDREFSFVLDVSSRSYK 205
                    789*****************************97 PP

>> CENP-K  Centromere-associated protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   6.6   4.1e-06    0.0056      60     170 ..      40     148 ..      16     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.1e-06
      CENP-K  60 aeleqwekktpeiislneevllalgkeelqklksqLelvlsiiqsknkklkedLkrEqewleeqqeilesLkektkelkkqvvafsektrksaelkeki 158
                 a  +  ++ ++ei  +n++  +a  k++l+  ++q+e   +  ++k+ +l ++L rEqe  +e +  ++++ ++ + +k++ +++  +  + +++    
  CDO70507.1  40 AVSNYTQRAVAEI--TNRKNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEASVAAFRRQLNSIKEKCASLDVEIEQHRIVAANL 136
                 4445556666777..888888999999999999*************************************************99999988888888887 PP

      CENP-K 159 rkikeykeeLlt 170
                 + ++++++ +l+
  CDO70507.1 137 MRERKREQAILN 148
                 777777777665 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  13.1     3e-05     0.041     336     467 ..      46     174 ..      35     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
      DUF812 336 qeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelk 434
                 q+ + e+ ++ +++++e k+l+++++q+e e+++ k +  el + ++ ++   e  ++ae+++++  + +++ +++  +l  + e+hR+   +  re k
  CDO70507.1  46 QRAVAEITNRKNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQ---EEKKEAEASVAAFRRQLNSIKEKCASLDVEIEQHRIVAANLMRERK 141
                 6678899999**************************99999988777666...566789**************************************** PP

      DUF812 435 esksekekeaerkleeikklrekmkevaeelrq 467
                  +++  ++ a+r l e+ + ++++k ++e + +
  CDO70507.1 142 REQAILNAHASRTLPELTACEATLKCAIEGIDK 174
                 *******************99999988887655 PP

>> TPP_enzyme_M_2  Middle domain of thiamine pyrophosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   7.6e-05      0.11     132     202 ..      24      97 ..      20     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.6e-05
                     -SB--TT--SEEEEES-HHHHHHHS-----...----SHHHHHHHHHHHHHHTT.TTSSSHHHHHHTGGGGS-T CS
  TPP_enzyme_M_2 132 qgrldpahhrkrrfvakveewlrahpaesq...kpWalellalseklaelveqqldeefgEaqlahqlaellpe 202
                     + rld+++ + r+f   v+++++   ae +   + +a+e ++l+ek++++ +++ + +  E++l+  l++ + e
      CDO70507.1  24 DLRLDAYETSTRNFLNAVSNYTQRAVAEITnrkNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEE 97 
                     569*******************9888764422266************9999988888********999987755 PP

>> MecA_N  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.3   0.00021      0.29       4      91 ..      32     126 ..      29     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHTT-HHHHHCTB--BSSBSS-HHHHHHHHHHH...CCCTT-EEEEE...EEEEEEEEETTEEEE.EEEEEEEETTEEEEEEEEEE CS
      MecA_N   4 eaaetFldawakgdykkaasllseqskkeisekeavekyqai...ydglqvkklki...eakkvkkdkentaei.pykvsmntpagkiktldskl 91 
                  + ++Fl+a ++     +a++++ ++  +  +k + ek q+i   +++ +vk++++    +++ +++ke +a++ +++ ++n  ++k ++ld++ 
  CDO70507.1  32 TSTRNFLNAVSNYTQRAVAEITNRKNAYAAEKKRLAEKTQQIeaeTNQCKVKEIELiavLDREQEEKKEAEASVaAFRRQLNSIKEKCASLDVEI 126
                 56789*********************999999999999888854477899999999977555555555555554268888988888888877765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.5     0.018        25     192     264 ..      29     102 ..      16     104 .. 0.79
   2 ?    9.3  15.2   0.00035      0.48     146     241 ..      54     152 ..      42     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
        Spc7 192 elesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksele.eeiaeaervleeckgws 264
                   e+++++ L+++ +  +++ aei ++k+ +a  +++l+e++++ie+ ++q++  e e ia  +r +ee+k+ +
  CDO70507.1  29 AYETSTRNFLNAVSNYTQRAVAEITNRKNAYAAEKKRLAEKTQQIEAETNQCKVKEiELIAVLDREQEEKKEAE 102
                 55677788899999999999999999999999999999999999999888876444155777888888887765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00035
        Spc7 146 enlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles..id.keeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 ++ ++  ++k++L+++ +++++  ++ + ++ el + l+++qe+++e e+     + +L++++e+ a+l++eie+++   a+l +++++ ++ +++ ++
  CDO70507.1  54 NRKNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEAsvAAfRRQLNSIKEKCASLDVEIEQHRIVAANLMRERKREQAILNAHAS 152
                 556667789999999999999999999999999999999999999888885422689999999999999999999999999999999998888876554 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  15.3   0.00015      0.21      23     107 ..      46     130 ..      35     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
     DUF4200  23 qrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                 qr   ++++r++++ +++++l e+ ++ +   ++++ k ++ +   ++e+++kke ea ++ ++ +++ +k++ + l+ ++e+++
  CDO70507.1  46 QRAVAEITNRKNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEASVAAFRRQLNSIKEKCASLDVEIEQHR 130
                 6677788999999999999***********************************************************9999876 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  12.3   0.00019      0.26      30     129 ..      36     129 ..      21     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      APG6_N  30 eflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeh 128
                 +fl+ + ++      ++  ++e+ ++  +  +e+++l e+ +++e+e  + + +  +l + l++ +ee+++   +  +++++l++ +e+ +sl++++e+
  CDO70507.1  36 NFLNAVSNY------TQRAVAEITNRKNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEASVAAFRRQLNSIKEKCASLDVEIEQ 128
                 455555555......34589999999*********************************************************************9998 PP

      APG6_N 129 a 129
                 +
  CDO70507.1 129 H 129
                 7 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.7    0.0011       1.5     120     235 ..      27     149 ..      13     165 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
     DUF4407 120 akelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkakld.atar 211
                  +++++++++     ++ ++++ a+i++ +++++a ++rl++++++ ++e+++ k    + +    ++ ++ ke++a  +a +++l+++k+k    + +
  CDO70507.1  27 LDAYETSTRNFlnaVSNYTQRAVAEITNRKNAYAAEKKRLAEKTQQIEAETNQCKvkeIELIAVLDREQEEKKEAEASVAAFRRQLNSIKEKCAsLDVE 125
                 555555555445557778899999999*********************999975555433444444555555555555555555555555554476666 PP

     DUF4407 212 laalraelaeleaerakeraasqa 235
                 ++++r  +a l +er++e+a  +a
  CDO70507.1 126 IEQHRIVAANLMRERKREQAILNA 149
                 666666666666666666655444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.5    0.0028       3.9      38     118 ..      36     127 ..      28     137 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0028
     DUF1664  38 slsdavesvsk....qleqvseslaatkrhLssridrvdkkldeqk.......eiskeikeevtevredlseigedvesvkeavegleskle 118
                 ++ +av++ ++    ++++ +++ aa k++L+++ ++++++ +++k       ++    +ee +e++  +++++++++s+ke   +l+ ++e
  CDO70507.1  36 NFLNAVSNYTQravaEITNRKNAYAAEKKRLAEKTQQIEAETNQCKvkeieliAVLDREQEEKKEAEASVAAFRRQLNSIKEKCASLDVEIE 127
                 55555555443222256777788888888888888888877777652222111233445666777777888888888888888888877776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.6    0.0021       2.9       2      90 ..      68     156 ..      26     165 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0021
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlk.evesllp 90 
                 e+ +++e e+++++ ++ e+++ l++ ++ +++   +++  +++l+++k++  +l+ +++ +++  +++l +e k+++++l+   + +lp
  CDO70507.1  68 EKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEASVAAFRRQLNSIKEKCASLDVEIE-QHRIVAANLMRERKREQAILNaHASRTLP 156
                 344555666666666666666666666666666666666666666666666666666653.44445555666666666666646666666 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.2    0.0032       4.4      28      93 ..      45     110 ..      27     138 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0032
     DUF3450  28 avaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeiee 93 
                 +++a a++ +++++++ ek+ l+++ +++++e+++ +v++ +l ++++  ++e ++ e + + +++
  CDO70507.1  45 TQRAVAEITNRKNAYAAEKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEASVAAFRR 110
                 445555666666666666666666666666666666666666666666666665555554443333 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   9.4      0.11   1.6e+02       5      48 ..      62     105 ..      39     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
       Spc24   5 ekfriakelsdleselesleselaelkeeleeleeeseekeser 48 
                 ek r+a++ +++e+e+++++ +  el + l+  +ee++e e+++
  CDO70507.1  62 EKKRLAEKTQQIEAETNQCKVKEIELIAVLDREQEEKKEAEASV 105
                 66677777777777777777777777777777777777733333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2509  (0.139941); expected 358.6 (0.02)
Passed bias filter:                      803  (0.0447878); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 1452.78
//
Query:       CDO70508.1  [L=464]
Description: hypothetical protein BN946_scf184569.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-19   70.3   0.0    7.2e-10   38.0   0.0    3.0  3  AATase          Alcohol acetyltransferase
    0.00014   20.7   0.0     0.0011   17.7   0.0    2.2  3  Condensation    Condensation domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.025   14.3   0.0    1.3  1  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer
      0.018   14.8   0.1       0.34   10.7   0.1    2.3  2  PAS_5           PAS domain


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   1.9e-05     0.087       2      55 ..      11      68 ..      10      77 .. 0.89
   2 !   38.0   0.0   1.6e-13   7.2e-10     136     309 ..     116     270 ..      87     286 .. 0.78
   3 !   17.5   0.0   2.8e-07    0.0012     413     483 ..     352     430 ..     313     442 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.9e-05
      AATase  2 lGslEkyfvvrnrqklysnfsvyaelnke....vdkeqLalalrslilknpiLaanii 55
                +G lE +f+ r ++ + s++  +a++ +     +dk  L  al ++i k+pi+ ++ +
  CDO70508.1 11 AGVLEAFFYTRTQLGVDSCVAATANYMHIggrpLDKPTLFTALEEVIAKHPIMGTRLY 68
                79************************86333339********************9988 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 1.6e-13
      AATase 136 dpkkPlwrlivlpsaddkkkwkkfvfitdHllfDGisgvnffkdlleelekikqdnalkkdevildyekdveelekLPkpieekvdyrpsllalpklll 234
                 d   Plwrl++lp         + +++ dH + DG+sg   +  ll  l+k+ +++   +  +i   + d + ++ LP p+ee     ++l+++ k + 
  CDO70508.1 116 DADLPLWRLMILPG-------GQLIYANDHAMGDGLSGLSALFTLLAALQKVPENPT--HSGII-SLS-DRQ-ISLLP-PLEEALTIPVPLSMIFKEVN 201
                 4456**********.......599***************99999************9..55555.443.333.679**.************99887766 PP

      AATase 235 vsfiasklnfkkseekpltkehs.avqksnkshqiilkispeevkkirakikknvhgkatlTpflqavffvalykl 309
                  s      +f + +++++ +    a   +   + +i++i+pee++ + + ++ n    +tlT  l + +  ++   
  CDO70508.1 202 QS----LNPFASRKRNSIWTGNTvARAYKLGVNVRIIRINPEEMNYLVKMCRTN---GTTLTGVLFVLAVNSMVMF 270
                 55....33566655555554433033344456668*******************...*****99877776666554 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 2.8e-07
      AATase 413 llkkkilktkrstaevsNlGlfsq........eeeskykvkdliFsqaagslknafslnvistnsgGlnlslsvvedll 483
                 + +  + k++ +t+e+sN+G +s          +e+++++ dl+  qa g   +a+ +nv  t  gGl ++l+  +d +
  CDO70508.1 352 YFQGLLGKKREGTVEISNVGPVSSawgvrrqpTPEEPWTMPDLLICQADGTAGAALKVNVTGTVPGGLGITLTWGKDAM 430
                 5555677899*********9877666666668899************************************99877765 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.5e-07    0.0011      38     146 ..      43     145 ..      31     159 .. 0.84
   2 ?   -3.1   0.0      0.53   2.4e+03     231     256 ..     235     260 ..     230     268 .. 0.81
   3 ?   -0.2   0.0     0.069   3.1e+02     393     439 ..     409     454 ..     403     461 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.5e-07
                   ---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-.TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS.-SEEEEEEESSTTEEE CS
  Condensation  38 eldlerlekalqelierhdaLRtvfleeengepvQvil.eerevelevleisdleeseeeeaieefaqkdlqepfdLekg.pLfraalfkiaenrll 132
                    ld+ +l +al+e+i +h+++ t++   ++ ++  +++ ++ +++  +++++  ++ +  +++e+++++   +pfdL+++ pL+r +++     +  
    CDO70508.1  43 PLDKPTLFTALEEVIAKHPIMGTRLYGTATSRVPSWVRlDSIDLNR-IVQFR--DDLD-PAQLESILEDVFLQPFDLDADlPLWRLMILP----GGQ 131
                   58999********************989999999999866666665.78888..4555.5789*****999****************998....777 PP

                   EEEEEECCT--TTT CS
  Condensation 133 lllsvHHiivDGvS 146
                   l+ +  H + DG S
    CDO70508.1 132 LIYANDHAMGDGLS 145
                   77777788888877 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.53
                   EEEE-S-HHHHHHHHSTSS-HHHHHH CS
  Condensation 231 kldeeteeklrklakeqgvtlndvll 256
                   ++++e ++ l k+++ +g+tl+ vl 
    CDO70508.1 235 RINPEEMNYLVKMCRTNGTTLTGVLF 260
                   567788899999*********99985 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.069
                   EEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTT CS
  Condensation 393 lsleasetngkltikieYntslFdeetierflerlkelleqviehpe 439
                   ++++++ + g+l i++ + +++ de++ +++ e +++ l+ +++ ++
    CDO70508.1 409 VNVTGT-VPGGLGITLTWGKDAMDEAFANQWVEAIRDGLKSLVSTTS 454
                   344444.489*****************************99998775 PP

>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.6e-06     0.025      34     166 ..      42     167 ..      27     219 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.6e-06
  WES_acyltransf  34 gelllrrlreaieqreeraprlrqkvveeplglaapvWvededfDldyHvRrvalpaPGterellelvsrLasspLDrsrPlWevhviEGleggr 128
                      +l+ + l++a+e++ ++ p +  ++  + +    p+Wv  + +Dl++ v      +P++ + +le v  L+   LD + PlW + +++G +   
      CDO70508.1  42 RPLDKPTLFTALEEVIAKHPIMGTRLYGTAT-SRVPSWVRLDSIDLNRIVQFRDDLDPAQLESILEDV-FLQPFDLDADLPLWRLMILPGGQ--- 131
                     5556678889999999999999998877665.579************999988888899988888888.799999************99854... PP

  WES_acyltransf 129 iAillkvHHAliDGvgglkllarlldldpddpprpepp 166
                       ++    HA+ DG++gl  l  ll + ++ p+ p+  
      CDO70508.1 132 --LIYANDHAMGDGLSGLSALFTLLAALQKVPENPTHS 167
                     ..566679**********98887776555544444443 PP

>> PAS_5  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   7.5e-05      0.34      24      44 ..      92     112 ..      78     124 .. 0.83
   2 ?    1.4   0.0     0.057   2.6e+02      62      91 ..     423     452 ..     393     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.5e-05
       PAS_5  24 rRsdidPaklrelLgdvFile 44 
                  R+d+dPa+l+++L+dvF+  
  CDO70508.1  92 FRDDLDPAQLESILEDVFLQP 112
                 59****************865 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.057
       PAS_5  62 allGrelrgksfsalfteasreeleevvev 91 
                    G++  ++ f++++ ea r  l+++v++
  CDO70508.1 423 LTWGKDAMDEAFANQWVEAIRDGLKSLVST 452
                 55799999**************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3247.51
//
Query:       CDO70509.1  [L=143]
Description: hypothetical protein BN946_scf184569.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 994.39
//
Query:       CDO70510.1  [L=138]
Description: hypothetical protein BN946_scf184569.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-12   47.2   0.0    1.8e-12   46.7   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0     1e-16   1.8e-12     347     444 ..      15     106 ..       3     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1e-16
                 SSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGG CS
        p450 347 tkdvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpp 444
                 t  + + + ++p Gt+++v + a +r+++++ ++++eF+peR+l+     +  + a +P   G+ + +G  + ++e+k++l+ lL+n+ +el  e+  p
  CDO70510.1  15 TDGTMLTEIVVPRGTNIFVAIMAFNRNKALWgEDAHEFKPERWLKPLP--DALEKAAIP---GVYSHLGFTFSQLEMKVVLSELLSNYAFELSTEK--P 106
                 556778899*************************************65..488999999...*****************************95433..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1077.22
//
Query:       CDO70511.1  [L=283]
Description: hypothetical protein BN946_scf184569.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-30  105.4   0.0    5.9e-30  104.4   0.0    1.4  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   3.3e-34   5.9e-30     136     334 ..      71     283 .]      60     283 .] 0.88

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 3.3e-34
                 CSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH..................HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHH CS
        p450 136 sselditellskaaldvigsilFgarfdlledek..................lselvkaveelssllskssvqllllfpllkylptkllrklkeavkkl 216
                 ++ +d+ +++s+ al+ ig+   g++fd l+++                   +  l++++    +  +  +  l+l  +l+  lp + l++l ++v++l
  CDO70511.1  71 AADIDMMNWMSRTALELIGQSGIGHSFDPLTEDVadayaeavksftatatcaEMMLLRQM----TAIAPYMGPLWLRRWLIERLPLPVLQRLIQIVDAL 165
                 3369************************99999988988888887776533222222222....244588899999999******************** PP

                 HHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-H CS
        p450 217 kdlldklieerretldsakksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkrept 314
                 +    kl++e++  l+++k++  d +++ll a   ++++ + l d+el  ++  ++fa++dTts++ls +L++La +Pe+qeklr+E++e+  + ++++
  CDO70511.1 166 HFGSLKLLREKKIALRNEKNDGQDIISILLRANsAASEE-DRLPDDELLGQMSSIIFAAMDTTSNALSRVLHLLAGRPELQEKLRHEVMEAKAHGEQLD 263
                 ********************************9544444.59**************************************************99999** PP

                 HHHCCT-HHHHHHHHHHHHH CS
        p450 315 yddlqklpyldavikEtLRl 334
                 yd+l  lp+ldav++EtLRl
  CDO70511.1 264 YDQLHALPFLDAVCRETLRL 283
                 *******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1878.23
//
Query:       CDO70512.1  [L=166]
Description: hypothetical protein BN946_scf184569.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-07   30.3   0.5    6.1e-07   30.3   0.5    1.8  2  DUF1770   Fungal protein of unknown function (DUF1770)


Domain annotation for each model (and alignments):
>> DUF1770  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.5   3.4e-11   6.1e-07      28      87 ..       6      66 ..       1      73 [. 0.61
   2 ?   -1.1   0.1      0.22   3.9e+03      91      98 ..     116     123 ..      69     124 .. 0.57

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.4e-11
     DUF1770 28 kepvtleekskk....ddesldskeeddeedeipysvirpvsrrqtlpPlPDLRFeqSYLkSia 87
                 epv  ++ s++    + +++d+       +e   + ++ + +r+++pP+PDLRFe SY++S+a
  CDO70512.1  6 AEPVRHRKPSEHdlflRLQTIDEMVR---ANEEAQRRLERITERRRIPPVPDLRFEYSYIRSVA 66
                55666655554433333333332222...23333344555556889****************96 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.22
     DUF1770  91 twwkvali 98 
                 +w +v +i
  CDO70512.1 116 DWGQVLWI 123
                 35555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1256.33
//
Query:       CDO70513.1  [L=241]
Description: hypothetical protein BN946_scf184569.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-13   49.7   0.0    7.1e-13   49.3   0.0    1.2  1  PIG-L     GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     4e-17   7.1e-13      13     130 ..       2     118 ..       1     119 [. 0.87

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 4e-17
                 HHHHHHHHHHHT.....T-EEEEEECE--TT---STTTTHH-HHHHHHHHHHHHHHHHCTE..EEEEECC...CBTT-STTS-CHHHHHHHHHHHHHH- CS
       PIG-L  13 faggtiaklvaa.....gvevkivcltaGdagsplatleekeelaeiRekEaraaakhlgvadedvffld...fpDgslesydedellddlaklieryr 103
                 f+++ti++l +        +++ +cl+ G+a+          +l+e+R+ E+ +++ +lg++d +  ++d   ++D+ +++++ + ++d+l+ ++ ++ 
  CDO70513.1   2 FFAPTILALLDIedahrRPQLYSLCLSVGNAD----------GLGEVRRHELARSLDILGIEDGRRWVVDspnLQDNFTAQWHPQVISDVLKPYVLEHD 90 
                 66666666654322233779999*********..........*******************988888888999************************** PP

                 -SEEEEE-TTTT.H-HHHHHHHHHHHHH CS
       PIG-L 104 Pdvvltldpegd.dhpDHtavasaavaa 130
                  d++lt+d++g  +hp+H ++ ++a++ 
  CDO70513.1  91 IDIILTFDEHGVsSHPNHISLPKGAAHL 118
                 ********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1872.81
//
Query:       CDO70514.1  [L=244]
Description: hypothetical protein BN946_scf184569.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-21   77.3   0.0    2.5e-21   76.7   0.0    1.3  1  DUF3455   Protein of unknown function (DUF3455)


Domain annotation for each model (and alignments):
>> DUF3455  Protein of unknown function (DUF3455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   1.4e-25   2.5e-21       6     158 .]      61     240 ..      56     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 1.4e-25
     DUF3455   6 lalvalgrGtqnYtCaasaagaaeptavgavAtLfdatclaakl......pdlleslpslv..................aelklvgkhfftdgt..... 75 
                  +++ l+ G+qnYtC++   +++  t  gavA+L+d +c+ ++       +dl +                        +  +++++h+f ++      
  CDO70514.1  61 PKFIGLAFGVQNYTCST--GNNF--TSAGAVAELIDVSCIVSSPgfstiqNDLYSF----WttlvpysiqsiidflhivNPPEILAQHYFVTNPitgqg 151
                 678899*********44..4444..669************9998664444444444....35555*************977888888888633345667 PP

     DUF3455  76 .gPtfdldldgskvtgkkva........svaApkdaagavawllltakesgtlsgvtevyRveTaGGsapatCeka.gekfeveYaAeYvFyg 158
                  +P +d+  ++ k  g++ a         ++ p+d + ++awl + +   ++    +ev+R +T GG++p++C+    ++++v+Y  +Y+Fyg
  CDO70514.1 152 iSPKWDFT-SSGKFQGVQDAfiiakgkgTIPSPDDPTHDIAWLDVVQ---VEGDIASEVFRFDTVGGQPPSSCTYGkDKDISVKYVSKYIFYG 240
                 799****9.6666666666656666677999999999*********8...5577789*****************98799*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1616.91
//
Query:       CDO70515.1  [L=364]
Description: Class II peroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-30  104.5   0.0    1.1e-29  103.8   0.0    1.3  1  peroxidase      Peroxidase
      2e-29  101.4   1.4    5.2e-29  100.0   1.4    1.8  1  Peroxidase_ext  Fungal peroxidase extension region


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   1.2e-33   1.1e-29       1     228 [.      46     282 ..      46     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1.2e-33
                 HHHHHHHCCCCTTTHCHHH...HHHHHHHHTT.............SSTTSCHHH.TCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHH CS
  peroxidase   1 vrafvkaalkadrdmgpsl...lrlafhdcfv.............gGcdgsvll.lepektapaNaslrkgldvldaikakleaacpgvvScADliala 82 
                 vr+++++ l + +++g ++   lrl+fhd++              gG+dgs+ +  + e + +aN +++   +++d+ +  ++++    +S+AD+i++a
  CDO70515.1  46 VRDDLQQNLFDGGECGEEVhesLRLTFHDAIGispkiaatgvfggGGADGSIAIfEDIETNFHANLGVD---EIIDEQRPLIQRH---NISVADFIQFA 138
                 5778888888889999966666*******87778888888889999******883555666999*****...7777777777764...5********** PP

                 HHHHHHCT.T--..--EE---S-SSGGGS-S...-.-TS-HHHHHHHHHHHT.--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HHS CS
  peroxidase  83 ardavela.ggplvpvslGRrDatessasevsnlPdptasvdelrdkfarkg.ltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCasg 179
                 ++ +v+++ g p  +v +GR+Dat++       +P+p+++v++++++f + g +t+ e+vaL+ +Hti +a              ++d+++ ++     
  CDO70515.1 139 GAIGVSNCpGAPRLDVFVGRKDATQPAPDLT--VPEPFDNVTHILERFDDAGkFTPAEVVALLVSHTIAAAD-------------HVDPTIPGT----- 217
                 ********888888*************9533..6**************88877*******************.............466777764..... PP

                 .........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCCC CS
  peroxidase 180 ntelvdld.tptkfdnsyfknlle....................krgllrsDqvllsdsetralvekyae 228
                      ++d tp++fd+++f ++l                     +++ l+sD +l++d++t++ ++++ +
  CDO70515.1 218 -----PFDsTPEEFDTQFFIETLLkgtlfpgtagnqgevesplhGEIRLQSDFELARDARTACEWQSFVN 282
                 .....7888**********998888**************************************9999987 PP

>> Peroxidase_ext  Fungal peroxidase extension region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   1.4   5.8e-33   5.2e-29       1      79 []     286     363 ..     286     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 5.8e-33
  Peroxidase_ext   1 kmassFkaamakLallGqdrskLidCSdvipvpkpavnkpatfPagttpkdleltCateaFPtLtvdpGattslipvcs 79 
                     k++s+Fkaa+ k+++lG+d ++L+dCS+++p+p p+++k a+fPag+++kd+e++C+ ++FP+L++dpG++ts++pv++
      CDO70515.1 286 KLQSAFKAAFRKMTVLGSDVRTLTDCSELVPTPPPPASK-AHFPAGLSRKDVEQACRFTPFPSLPTDPGPVTSVAPVPP 363
                     6899*********************************99.*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2534.67
//
Query:       CDO70516.1  [L=160]
Description: hypothetical protein BN946_scf184569.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 1071.30
//
Query:       CDO70517.1  [L=1567]
Description: hypothetical protein BN946_scf184569.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   48.2   2.4    0.00011   22.6   0.0    4.5  4  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.1e-09   0.00011       1      79 [.     516     590 ..     516     601 .. 0.82
   2 !    4.7   1.2     0.002        35     129     146 .]     609     626 ..     596     626 .. 0.77
   3 !   10.5   0.0   3.3e-05      0.59       1      79 [.    1416    1490 ..    1416    1502 .. 0.83
   4 !    5.5   0.6    0.0011        20     128     146 .]    1508    1526 ..    1495    1526 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.1e-09
         HET   1 YeaLSYvWgdskekeeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelviv 79 
                 Y+a+S+vW d    ++ ev+  ++ +t+  ++a   l   ++   W D++CI  +  + ++k ++lma+ Y+ A+ v+v
  CDO70517.1 516 YVAISHVWADGMG-STAEVGLPRCVVTRIAKSAQALLP--EIGAFWMDSLCIPAT-GDLRKKAIKLMAQTYRAAAKVLV 590
                 9*******99865.444454567777777777766666..6789**********9.788999*************9998 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.002
         HET 129 ieellespwfkRvWvlQE 146
                 + +++ s w++RvW+lQE
  CDO70517.1 609 MCRIAASGWVRRVWTLQE 626
                 44678899*********9 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 3.3e-05
         HET    1 YeaLSYvWgdskekeeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelviv 79  
                  Y+a+S+vW d   +++   +g ++ + +++ ++++ l   + r    D++C+  d    ++  +++m+d Y  A+ v+v
  CDO70517.1 1416 YVAISHVWADGMGSTTE--EGLPVCVVKQIASLVSGLLPGSAR-FCMDSLCVPED-RPLRKMAIRRMKDTYVDATKVLV 1490
                  9*******887642222..456789999999999999966555.559******99.899****************9998 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0011
         HET  128 aieellespwfkRvWvlQE 146 
                   +  ++ s w++R+W+lQE
  CDO70517.1 1508 NLLMIAASGWMRRIWTLQE 1526
                  555678899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 10279.67
//
Query:       CDO70518.1  [L=578]
Description: hypothetical protein BN946_scf184569.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3893.53
//
Query:       CDO70519.1  [L=467]
Description: hypothetical protein BN946_scf184569.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-14   51.9   1.2    6.7e-08   32.6   0.8    2.4  2  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.8   3.7e-12   6.7e-08       2      70 ..     171     244 ..     170     249 .. 0.81
   2 !   17.1   0.0   2.2e-07    0.0039     148     210 ..     380     443 ..     360     444 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.7e-12
                    EEE--STTTS--TTTT...HHHHHH.HHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHH.HHTETT CS
  Abhydrolase_3   2 vyfHGGGfvlgsldth...dalcre.lakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqaw.elgadp 70 
                    +++HGGG++ +s+  +    ++ ++ + +++  ++ +v+Yrl   +pfPaav+da a++ +++++++ + + +p
     CDO70519.1 171 IFLHGGGYCHMSAHENaptSQIPERlMRDKVFTEIHAVEYRLLQHAPFPAAVQDAAAVYAHIVQRHQrHGHKKP 244
                    69********999777677555555155678899*****************************99874555555 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.2e-07
                    GGGGSTTTSGGGC.S-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 148 adrddplasplla.edlsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgfa 210
                     ++++p ++  ++ + +s++p+t vv ++ + l +e  ++  +++  gv+v++i +++++H+++
     CDO70519.1 380 TSLAHPIIASPRGlSLFSEFPKTCVVLGDAERLEREVMRLVGAMERDGVDVHTIWVKDAPHDVL 443
                    3455666665656445*********************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 3133.97
//
Query:       CDO70520.1  [L=155]
Description: hypothetical protein BN946_scf184569.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   21.5   0.0    0.00023   20.8   0.0    1.3  1  DUF1295   Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-08   0.00023     173     223 ..      12      71 ..      10      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-08
     DUF1295 173 aliWwglflialea.........leglealaiagpllltlllvfvsgipllEkkalkkyk 223
                 +l+Wwg++ +++           + +++  ++a+pl+++++l+f sg+p+ Ek   +k++
  CDO70520.1  12 ILCWWGIWTLSVAPsvhgnvsgpARSAQLGTLASPLFTMVVLLFGSGVPTAEKPVAQKFH 71 
                 689*****9998653444444445667889**********************99888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1156.01
//
Query:       CDO70521.1  [L=355]
Description: hypothetical protein BN946_scf184569.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-09   35.3   0.3      3e-08   33.4   0.3    2.1  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.014   15.5   0.1      0.024   14.7   0.1    1.3  1  ParBc_2     Putative ParB-like nuclease
      0.028   12.6   0.0      0.038   12.2   0.0    1.1  1  EzrA        Septation ring formation regulator, EzrA
      0.061   13.3   0.0       0.11   12.5   0.0    1.3  1  Laminin_II  Laminin Domain II
          6    6.9   8.6        2.4    8.1   1.7    3.4  2  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.3   8.5e-12     3e-08       2      46 ..      73     120 ..      72     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 8.5e-12
  F-box-like   2 srLPdEiLlqIFsy.L.ppsdLlr.l.alVCrrWrrvaldtplLWrrlv 46 
                 +rLP+E+L++IF++ + +  + ++ + a+VC+ Wr +al +  +W++++
  CDO70521.1  73 RRLPEELLIKIFEHcVeDGWTRAPlVvAHVCSAWRKAALAP-KVWSHVY 120
                 69**********9724344466664359**********998.*****98 PP

>> ParBc_2  Putative ParB-like nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   6.8e-06     0.024      62     139 ..     101     180 ..      99     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHTT-....-EEEEEEE..EE-.TTS-HHHHHHHHHHTT--B-B-TTS-B--GGGS-SSGGG-EE..-HHHHHHHHH CS
     ParBc_2  62 Hllrallesgvggaekkvlvkvv..adl.salskeeFwekmeeekwvhlydekgeplsveelPkslgeled..dpyRsLaafv 139
                 H+++a++++     ++kv+ +v   ad  +al++++Fw +m +  ++h+   +  ++ ++++ + +g l d   ++RsL   +
  CDO70521.1 101 HVCSAWRKAAL---APKVWSHVYanADDpKALDRTRFWLAMARGANLHVTVVTSWRILPRQIMELMGVLVDrsAQWRSLKVET 180
                 99999999555...555555554114441556********************999999999999999987633589*998765 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.1e-05     0.038     101     143 ..      25      67 ..      19      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHH CS
        EzrA 101 kklaeleeeldeveekikkileelkelteseeknreeieklke 143
                 +++ + e+ +d++e +i+++l+++++l+  + k+r+ ie +k 
  CDO70521.1  25 ATIHSHESAIDDLEDRIQDLLHQVQDLRYDQAKHRASIERCKG 67 
                 678899*********************************9986 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05      0.11      39     104 ..      12      74 ..       4      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS
  Laminin_II  39 sveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARk 104
                  +e t + +++a  +i + ++++ +Le  +++Ll +++ l+  + +     ++i++ k lI  AR 
  CDO70521.1  12 RLEPTPDAIDAAWATIHSHESAIDDLEDRIQDLLHQVQDLRYDQAK---HRASIERCKGLITLARR 74 
                 567788888999999999******************8888877666...579*************7 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.7   0.00067       2.4       5      43 ..      74     116 ..      73     120 .. 0.71
   2 ?   -1.5   0.7      0.72   2.6e+03      21      32 ..     318     329 ..     308     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00067
                 HS-HHHHHHHHHTS-HHH.....HHHHCTT-HHHHHHHTTHHHH CS
       F-box   5 rLPsevlrhILerLplsd.....llalrrVSkgwrilidsdrlw 43 
                 rLP+e+l +I+e+ +  d      l  + V+  wr++   ++ w
  CDO70521.1  74 RLPEELLIKIFEH-CVEDgwtraPLVVAHVCSAWRKAALAPKVW 116
                 8************.444457766555667777777666666666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.72
                 HHHHHHCTT-HH CS
       F-box  21 sdllalrrVSkg 32 
                  d+++  +++++
  CDO70521.1 318 DDYCRTCQCCTN 329
                 589999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2605.02
//
Query:       CDO70522.1  [L=496]
Description: hypothetical protein BN946_scf184569.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-52  176.3   0.0    3.3e-50  171.2   0.0    2.4  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0     0.003        54       4      62 ..      37      95 ..      34     108 .. 0.79
   2 !  171.2   0.0   1.9e-54   3.3e-50     113     439 ..     111     462 ..     101     478 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.003
                ESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETT.EEEEEEESHHHHHHHHCTS CS
        p450  4 ptplplvgnllqlgrkeelhevlrklqkkygpifrlklgs.kpvvvlsgpeavkevlikk 62
                ++p  l gnl ql  +   + ++++++ +ygp+++++    ++  ++ +p a +++  ++
  CDO70522.1 37 QSPSLLAGNLGQLF-DTDAWGFHDEVATRYGPVVKIHAPFgRQWLYVFDPAALQSIVLRE 95
                44788899999997.5788999*************9865438888888888888776665 PP

  == domain 2  score: 171.2 bits;  conditional E-value: 1.9e-54
                 THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH................HHHHHHHHHHHHHHHHCHHHHCCCC CS
        p450 113 sleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledek................lselvkaveelssllskssvqllll 194
                 +l++++ e+a++lv ++ ++++ +   +d+ e++ + al++ig+  +g++fd l +++                ++  + +v++ls +l ++   + + 
  CDO70522.1 111 ELTPVFWEVANRLVSAISRRVKDAPrDIDVLEWMGRTALEIIGQAGMGHSFDPLVEDEatdpytkaakdylplsFTPEMMLVRQLSPIL-TRLGPPSFR 208
                 7899*************998888777**************************8888888************999778888999999999.888888888 PP

                 CHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 195 fpllkylptkllrklkeavkklkdlldklieerretldsa.kksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLak 291
                  ++++ +p +  +klk++v++l d+  k++ee+++ + +      +d +++ll+a   +++  + l de++  ++ +llfa++dTts++++ +L  L +
  CDO70522.1 209 RWIVDHIPIPRTQKLKRVVDVLYDTSVKIVEEKKDAIAKGdYAAGKDIMSVLLKANmAAEDS-ERLPDEHIIGQINTLLFAATDTTSHVMAQVLEMLSR 306
                 88************************************998557899******998555555.59********************************** PP

                 SHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET......T........EEE-TT-EEEEEHHHHHT-TTT CS
        p450 292 nPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir......g........ylipkGtevivnlyalhrdpev 376
                 ++e+qek r E+ e+ ++ +e+ yd l++lp lda++kEtLR+ p++p  ++Re+++d+v++      g        +++pkGt+v+v + a++r++++
  CDO70522.1 307 DQEMQEKARRELLEAGNG-DEILYDRLMSLPILDAICKETLRMFPPTP-IVMREAFQDTVLPlskpmrGtdgsvmesVVVPKGTNVLVGVRACNRNKAI 403
                 ***************966.48***************************.999*****999854444442334777789********************* PP

                 S.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 377 f.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqp 439
                 + +++ee +peR+l+     k  ++a++P   G+ + +G  + ++e+k++la+lL nF++el +
  CDO70522.1 404 WgEDAEEWKPERWLKPLP--KAVEDASIP---GVYSNLGFTFSQLEMKVILASLLTNFTFELSN 462
                 ****************65..599******...*****************************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3175.27
//
Query:       CDO70523.1  [L=729]
Description: hypothetical protein BN946_scf184569.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4784.01
//
Query:       CDO70524.1  [L=559]
Description: hypothetical protein BN946_scf184569.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-33  112.6   0.0    4.1e-32  110.4   0.0    2.0  2  SWIRM            SWIRM domain
    1.9e-12   47.1   0.0    3.2e-12   46.4   0.0    1.4  1  Myb_DNA-binding  Myb-like DNA-binding domain
    9.1e-10   38.7   0.0    1.8e-09   37.7   0.0    1.5  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
    3.3e-08   33.2   2.6    6.2e-08   32.3   2.6    1.3  1  ZZ               Zinc finger, ZZ type


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   9.1e-36   4.1e-32       1      89 []     141     226 ..     141     226 .. 0.97
   2 ?   -0.9   0.0      0.48   2.2e+03      34      62 ..     288     315 ..     279     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 9.1e-36
       SWIRM   1 ps.sewFdpdslhpiEkellselfngk..dktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlINf 89 
                 ps ++wFd++++hpiE+++l+e+fn++  +ktp+ Y+++R+++i++yr +p+eyltvt++     rr+l+g dv++++r+h+fLe+wGlIN+
  CDO70524.1 141 PSyAAWFDMSKIHPIERRALPEFFNSRhrSKTPAIYKDYRDFMINTYRLRPSEYLTVTAC-----RRNLAG-DVCAIMRVHAFLEQWGLINY 226
                 67789*******************999889******************************.....******.*******************8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.48
       SWIRM  34 lkiRnkiialyrenpkeyltvteaqkalk 62 
                 l++Rn i ++  +  ++ ++ +ea ++++
  CDO70524.1 288 LELRNSIYQTSAKA-SRPISSSEAAQLAN 315
                 689******99997.55599999866665 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   7.2e-16   3.2e-12       3      45 ..     393     435 ..     391     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 7.2e-16
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                       Wt +E +lLle+v+++ ++W++I e++g+Rt+ qc+ +++++
       CDO70524.1 393 DWTDQELLLLLEGVEMYEDDWSAIEEHVGTRTAQQCIRKFLQL 435
                      6***************************************986 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   4.1e-13   1.8e-09       1      44 [.     394     436 ..     394     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.1e-13
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44 
                     Wt++E  +Ll++ve+y++dW+ I+e+ + Rt++qc +++++ L+
      CDO70524.1 394 WTDQELLLLLEGVEMYEDDWSAIEEHVGTRTAQQCIRKFLQ-LP 436
                     ***************************99***********9.74 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   2.6   1.4e-11   6.2e-08       4      38 ..     329     363 ..     327     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.4e-11
                 -EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH.. CS
          ZZ   4 kytCdgCseapligvRyhclrcsdYDLCqsCfst.h 38 
                 +y+Cd+C+ ++  +vRyh+l+ +++ LC +C+   +
  CDO70524.1 329 AYQCDTCGVDC-TPVRYHSLKQKNFELCPPCYLDgR 363
                 79*******55.69*****************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4301.18
//
Query:       CDO70525.1  [L=217]
Description: hypothetical protein BN946_scf184569.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1423.96
//
Query:       CDO70526.1  [L=158]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-35  120.8   0.0    8.3e-35  120.6   0.0    1.0  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   4.6e-39   8.3e-35      77     198 ..      20     140 ..       3     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 4.6e-39
                     EEEEEEE-SSS-GTTT--GGGCEEEEEEEE-EETE-ST..EHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEE CS
  Glyco_hydro_61  77 vlvYlakcasgddcktvdgsglkWfKideegldasakk..WatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleV 169
                     +++Y++++ +    +   g+g++WfKi+e+++  ++++  + ++++    +++++tiP+sl++G+Yl+R E iALh a+++ggaQfY++Caql+V
      CDO70526.1  20 FSAYMSPAVPAA-NSPQAGTGKTWFKIWEDAPVYENGQlvFPSTTI----DEITFTIPKSLPSGQYLVRGEQIALHVASTVGGAQFYIGCAQLNV 109
                     3459*9996632.2333447889*********98877766555544....689****************************************** PP

                     ESS-SB.--..EEGCCSS-TTSTTTSS-TTT CS
  Glyco_hydro_61 170 tgsgtalpe..vsfpgaykasdpgilvniye 198
                      ++g+  p+  vs+pg+y+  +pgil+niy+
      CDO70526.1 110 INGGNGEPGplVSIPGVYTGYEPGILINIYD 140
                     *9888557556******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1151.96
//
Query:       CDO70527.1  [L=88]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-09   38.6   0.0    1.2e-09   38.5   0.0    1.0  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   6.4e-14   1.2e-09       1      64 [.      19      86 ..      19      88 .] 0.89

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 6.4e-14
                    XEEEEEEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCS....TTB--S.SBEEEETTSEEEEE CS
  Glyco_hydro_61  1 HgvvksltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCn....kagpaa.avaevkaGdtvtfe 64
                    H+++++l++ng+++  d+ +vr+++++++n p+tdv+s++++C+    +a+p++ ++a+v+aG+t+ f+
      CDO70527.1 19 HYTLPDLIANGTTF-PDWVYVRTTQNHYSNAPITDVNSTEFRCYeldlNATPGQtQIATVEAGSTIGFK 86
                    9************8.4588*************************77655668886679********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 705.66
//
Query:       CDO70528.1  [L=942]
Description: hypothetical protein BN946_scf184569.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-64  217.6   0.0    2.8e-64  217.1   0.0    1.3  1  Pkinase      Protein kinase domain
    4.8e-32  111.3   0.0    7.7e-32  110.6   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0008   19.4   0.0     0.0017   18.3   0.0    1.5  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.0   4.6e-68   2.8e-64       5     264 .]      52     313 ..      48     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 4.6e-68
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH............HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkke............kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladller 91 
                 e +G+G++G+V  a++++tg+  AvK++  +    ++               v rEi ++k ++hpni+r+++v+e ++elyl+leyveggel+d+l +
  CDO70528.1  52 ECVGKGASGRVKIARHRRTGQLAAVKILPLQPFLTSRSaanaqakaekhsLGVDREIIMMKLMNHPNIMRIFDVYEGEKELYLILEYVEGGELFDFLVN 150
                 679************************987654443333444556665555688********************************************* PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHH CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge..lKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvil 187
                 +g l++ ea  ++kqi+ gl+y H  +iiHrDlKpeNiLi++ +   +Ki+D+G+a+ +  + +l++ +g+++Y +PE++++++y ++++D+Ws+Gvil
  CDO70528.1 151 RGRLPPLEALAYFKQIVYGLNYAHTFSIIHRDLKPENILIHSLNPplIKIADWGMAAFAPPTLQLETSCGSPHYASPEIVNGHKYtGTATDIWSCGVIL 249
                 *****************************************433367*********************************888887************* PP

                 HHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 188 yelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 y lltg+ pf     ++    ++++l + +k+      k++ +s i++ akdll+++l +d +kR++++e+l+hp+l
  CDO70528.1 250 YALLTGRLPFD----DK----NVRTLLTKVKV-----GKYDMPSFIDPLAKDLLSRMLVVDVHKRISMSEILAHPWL 313
                 ***********....22....44553333444.....36789999*******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   1.3e-35   7.7e-32       4     256 ..      51     308 ..      49     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 1.3e-35
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..ST...........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl..ke...........eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdL 88 
                  g+ +G+Ga G+V  ++ +    ++ +  avK+l  +             + e+++  + +e+ +mk ++hpni+++  v+  e++l++++eyv+gG+L
   CDO70528.1  51 GECVGKGASGRVKIARHR----RTGQLAAVKILplQPfltsrsaanaqAKAEKHSLGVDREIIMMKLMNHPNIMRIFDVYEGEKELYLILEYVEGGEL 144
                  677899999999998888....6666777777633112322322221112222233455799999999****************************** PP

                  HHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE. CS
  Pkinase_Tyr  89 lkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft. 183
                   +fL ++   +l   + l +  q+  G++y ++ +++Hrdl   N+L+++    ++ki+D G+a        + + e++  + ++ +pE+++ +k+t 
   CDO70528.1 145 FDFLVNR--GRLPPLEALAYFKQIVYGLNYAHTFSIIHRDLKPENILIHSlnPPLIKIADWGMAAFA---PPTLQLETSCGSPHYASPEIVNGHKYTg 237
                  *****98..999999**********************************85456***********98...44444555556669***********986 PP

                  HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 184 sksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  +++D+Ws Gv+l+ ++t g+ p+ + + +++l+k+k gk  ++p+ + +  ++l+++ +  d ++R ++se++
   CDO70528.1 238 TATDIWSCGVILYALLT-GRLPFDDKNVRTLLTKVKVGK-YDMPSFIDPLAKDLLSRMLVVDVHKRISMSEIL 308
                  799**************.*****************9875.78899999999******************9996 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-07    0.0017     163     202 ..     173     212 ..     123     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-07
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                 +   +++H+Dl+p N+l+++ +++++ + D+++a  +pp+
  CDO70528.1 173 AHTFSIIHRDLKPENILIHSLNPPLIKIADWGMAAFAPPT 212
                 56789*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 6209.41
//
Query:       CDO70529.1  [L=221]
Description: hypothetical protein BN946_scf184569.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-25   90.1   5.6    5.3e-25   87.9   0.6    2.4  2  Syntaxin-6_N   Syntaxin 6, N-terminal
     0.0028   17.2   6.8     0.0037   16.9   0.7    2.6  3  PspA_IM30      PspA/IM30 family
     0.0035   17.3   0.4      0.008   16.2   0.4    1.6  1  JAKMIP_CC3     JAKMIP CC3 domain
     0.0058   14.2   2.8     0.0098   13.5   2.8    1.3  1  DUF3584        Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
       0.01   15.8   1.2      0.012   15.6   0.1    1.7  1  SNARE          SNARE domain
      0.013   15.2   2.0      0.025   14.3   2.0    1.6  1  Use1           Membrane fusion protein Use1
       0.02   13.8   7.2       0.24   10.3   0.5    2.1  2  Spc7           Spc7 kinetochore protein
      0.027   13.8   2.8       0.33   10.2   0.2    2.1  2  CorA           CorA-like Mg2+ transporter protein
      0.033   14.7   4.5      0.064   13.8   0.1    2.5  2  Spectrin       Spectrin repeat
      0.065   13.3   1.7        6.8    6.7   0.0    2.3  2  DUF1664        Protein of unknown function (DUF1664)
      0.086   13.0   4.6       0.32   11.2   0.1    2.9  3  DUF5446        Family of unknown function (DUF5446)
        0.1   12.9   2.6        1.3    9.3   0.1    2.9  2  DUF948         Bacterial protein of unknown function (DUF948)
       0.11   12.7   1.8         12    6.1   0.1    2.7  3  XhlA           Haemolysin XhlA
       0.17   12.3   4.4         11    6.5   0.1    3.8  4  FlaC_arch      Flagella accessory protein C (FlaC)
       0.19   11.4   8.2          2    8.0   1.9    2.2  2  Laminin_I      Laminin Domain I
        0.9    8.9   6.3        1.8    8.0   1.1    2.2  2  HMMR_N         Hyaluronan mediated motility receptor N-termin
        1.3    9.3   9.4       0.32   11.2   1.3    2.1  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
        1.7    9.2   8.7        1.8    9.1   1.3    2.4  2  APG6_N         Apg6 coiled-coil region
          2    8.9   6.9       0.25   11.8   0.3    2.5  2  DUF4140        N-terminal domain of unknown function (DUF4140
        4.1    7.5  11.9        8.6    6.4   0.6    2.8  3  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
        6.1    6.1  10.8        4.2    6.6   0.5    3.0  3  DUF3450        Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.6   6.2e-28   5.3e-25       1      98 [.       4     101 ..       4     102 .. 0.96
   2 ?    4.5   0.4     0.061        52      34      91 ..     160     214 ..     126     217 .. 0.54

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 6.2e-28
  Syntaxin-6_N   1 DPFfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpsk.fkidekelsrrrafveevreevk 96 
                   DP++ v++eVq sl++ae+l +++ r++++++   seel ++r+eL+++l+ +e dledLee+v++ve   ++ f+++e+e+ +rr++v++vr+ v+
    CDO70529.1   4 DPYHAVQAEVQGSLQNAETLRASYLRIRNTAQP-DSEELFWARNELKATLSALEADLEDLEESVNVVETTGARlFGLEESEVMERRRYVNHVRRVVE 99 
                   9*************************9988765.6***********************************************************999 PP

  Syntaxin-6_N  97 em 98 
                   ++
    CDO70529.1 100 NL 101
                   86 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.061
  Syntaxin-6_N  34 s...tseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveev 91 
                   s   t + l+e+   + +++++  + l+dLe+ v     ++s+ k++  ++++ r+f++++
    CDO70529.1 160 SiagTLNTLHEQAGLMGQEIGEHVEMLDDLERGV-----DRSEAKLST-AMKKMRKFIRQT 214
                   2344555566666666667777777777777777.....333444443.455556666665 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2      0.06        51     113     139 ..      44      70 ..       8      76 .. 0.75
   2 ?   -1.9   0.0       2.4     2e+03     107     128 ..      84     105 ..      78     110 .. 0.48
   3 !   16.9   0.7   4.3e-06    0.0037      60     138 ..     132     210 ..     125     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.06
   PspA_IM30 113 aveqlrkqlealetkieelkakkellk 139
                 a+ +l++ l+ale+ +e+l++ ++++ 
  CDO70529.1  44 ARNELKATLSALEADLEDLEESVNVVE 70 
                 456778888888888888887777765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
   PspA_IM30 107 laqqrsaveqlrkqlealetki 128
                 +++ r  v  +r+ +e+l + +
  CDO70529.1  84 VMERRRYVNHVRRVVENLRAEV 105
                 4444444444444444444333 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 4.3e-06
   PspA_IM30  60 leeqkeqakklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkell 138
                 + e+++  +++ k+ ++   ++++e++  ++  + +l +qa    ++  +  ++ ++l++ +++ e+k++ + +k+++ 
  CDO70529.1 132 VPEDEDAQAEWAKQEQQMILRQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKMRKF 210
                 5677888899*************************************************************99999876 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   9.3e-06     0.008      80     174 ..      17     181 ..       7     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.3e-06
  JAKMIP_CC3  80 laeyqalqrayalLreklggeldaerelkareqleselrktkskikdLeeaLaqk............................................ 134
                 l++ + l+  y  +r   +++ d+e+   ar++l++ l+  ++ ++dLee+ +                                              
  CDO70529.1  17 LQNAETLRASYLRIR--NTAQPDSEELFWARNELKATLSALEADLEDLEESVNVVettgarlfgleesevmerrryvnhvrrvvenlraevegrepepe 113
                 667777887775555..5569******************************9988899***************************************** PP

  JAKMIP_CC3 135 ........................GqdskwveekQalikrnqe....LvekikkleeeeskLkqeiqd 174
                                          q     +e+Q++++++ e    ++  +++l+e+ + + qei +
  CDO70529.1 114 rsrptsmvgpsgrgtdssvpededAQAEWAKQEQQMILRQQDEaidsIAGTLNTLHEQAGLMGQEIGE 181
                 *************9999999988544444456777777777777777555556666666666666655 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   2.8   1.2e-05    0.0098     821    1024 ..      10     210 ..       4     215 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
     DUF3584  821 keqveelesaaeeleqeltrliedtklerkklekerkalekqldqldenlrklrdllsklaelkldadaeqaegelaerlaaleelkrkrerlsedv 917 
                  +++v+   ++ae l+    r+ + ++ + ++l  +r+ l++ l++l++ l +l+  ++ + +        +++ e+ er ++++ ++r  e l+++v
  CDO70529.1   10 QAEVQGSLQNAETLRASYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEESVNVVETTGARLFGLEES-EVMERRRYVNHVRRVVENLRAEV 105 
                  4555555566666666666666666666666666666666666666666666666666664443333322222.46677777777777777777766 PP

     DUF3584  918 kkal...erfk.gvlkdksgsglaetweklreeestlsdkalelddarkllpaleelldvlvpqkrqalreqvsvlgldlneFydvledfdrriksi 1010
                  +      er + + +   sg g + +    ++ +++  ++     ++  +l++  e +d+++   +  l eq+ ++g++++e ++ l+d++r +++ 
  CDO70529.1  106 EGREpepERSRpTSMVGPSGRGTDSSVPEDEDAQAEWAKQ-----EQQMILRQQDEAIDSIAGTLNT-LHEQAGLMGQEIGEHVEMLDDLERGVDRS 196 
                  6433111222113455677777776665552222222222.....3444599999999999999988.99*************************** PP

     DUF3584 1011 skrLtrevseeakl 1024
                   ++L++++++  k+
  CDO70529.1  197 EAKLSTAMKKMRKF 210 
                  ******99887766 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   1.4e-05     0.012       1      30 [.     184     213 ..     184     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavky 30 
                 em+D+++  V++++ +++ a+k+++k+ ++
  CDO70529.1 184 EMLDDLERGVDRSEAKLSTAMKKMRKFIRQ 213
                 8*************************9986 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.0   2.9e-05     0.025     134     218 ..     109     211 ..      21     218 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-05
        Use1 134 spekekeskkk.............ksdedldavlkkhe.nl....qEklaeemlsLarnLKenslaasqiikkDtetlsksekaadqnlaslkkeserl 214
                 +pe e++ +++              +ded++a   k+e ++    q++  + + +   +L e++ +++q i +  e+l+  e+ +d++ a+l+++ +++
  CDO70529.1 109 EPEPERSRPTSmvgpsgrgtdssvPEDEDAQAEWAKQEqQMilrqQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKM 207
                 2222222222244555555566664455555444333313233338999999999999**************************************999 PP

        Use1 215 eehs 218
                  +  
  CDO70529.1 208 RKFI 211
                 8764 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00028      0.24     135     229 ..      18     112 ..       8     119 .. 0.87
   2 ?    7.1   1.3    0.0026       2.2     181     249 ..     145     213 ..     128     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
        Spc7 135 qllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeql 229
                 q  e+L+ ++ ++ ++ + d+e+L   ++el++ l +le+  ++lee ++  ++  + l  +++ e+ e r+ ++ +   +e++++e++ ++ + 
  CDO70529.1  18 QNAETLRASYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEESVNVVETTGARLFGLEESEVMERRRYVNHVRRVVENLRAEVEGREPEP 112
                 56688899999999999999999999999999999999999999999999999999999999999999999999999999999999988777665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0026
        Spc7 181 eeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee 249
                 +e +++ ++++e  ++    L++l+e+     +ei e+ ++l++l++ ++++e+k++++ ++++++  +
  CDO70529.1 145 QEQQMILRQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKMRKFIRQ 213
                 22232222344433344789************************************9998888877655 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00039      0.33     122     183 ..      47     106 ..      39     118 .. 0.77
   2 ?    3.8   0.2     0.034        29     103     174 ..     141     211 ..     132     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00039
        CorA 122 rlfellekleeeldeledeledstkkeilrelaqlrrr.lvklrralapnrevlkrllakadd 183
                 +l ++l++le++l++le+ +  +  +    +l+ l+++ + + rr++++ r+v+ ++l+ + +
  CDO70529.1  47 ELKATLSALEADLEDLEESV--NVVETTGARLFGLEESeVMERRRYVNHVRRVV-ENLRAEVE 106
                 57789***************..55555567899999666***************.66663333 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.034
        CorA 103 gkpkspgellyrlldeivdrlfellekleeeldeledel.edstkkeilrelaqlrrrlvklrralapnrevl 174
                 ++ k+ +++++r  de +d+++ +l +l+e+     +e+ e+ +  ++l++ ++  r+ +kl +a++ +r+ +
  CDO70529.1 141 EWAKQEQQMILRQQDEAIDSIAGTLNTLHEQAGLMGQEIgEHVEMLDDLERGVD--RSEAKLSTAMKKMRKFI 211
                 556677788888888888888888888888888888888776666666666666..77777777777777766 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   7.4e-05     0.064      39     100 ..      48     109 ..      17     111 .. 0.90
   2 ?    2.0   0.9      0.34   2.9e+02      10      57 ..     154     200 ..     134     217 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  39 llkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerk 100
                 l  ++ alea+l++ +e v+ +++++ +l+  ++s+  e +  ++++++  e+L++ ++ r+
  CDO70529.1  48 LKATLSALEADLEDLEESVNVVETTGARLFGLEESEVMERRRYVNHVRRVVENLRAEVEGRE 109
                 4448899*************************99999999999*************999996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  10 adeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqerv 57 
                  de  + i ++ + l  e+ g + +e+ ++++ +++le+ ++  + ++
  CDO70529.1 154 QDEAIDSIAGTLNTL-HEQAGLMGQEIGEHVEMLDDLERGVDRSEAKL 200
                 333333333333333.22223344444444444444444444444433 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.008       6.8      54     118 ..      38     106 ..      19     110 .. 0.75
   2 ?    5.5   0.5      0.02        17      48      98 ..     152     202 ..     141     216 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.008
     DUF1664  54 seslaatkrhLssridrvdkkl...deqkeiskeikeevtevre.dlseigedvesvkeavegleskle 118
                 se+l  ++++L++ +  +++ l   +e+ ++ + + + +  ++e ++ e ++ v++v+++ve+l +++e
  CDO70529.1  38 SEELFWARNELKATLSALEADLedlEESVNVVETTGARLFGLEEsEVMERRRYVNHVRRVVENLRAEVE 106
                 567777888888888888876511156667788888888888652688888899999999999987765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.02
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                 +q ++  +s+a t + L ++   +++++ e  e+  ++++ v++ + +ls+
  CDO70529.1 152 RQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLST 202
                 344555555666666666666666666666666666666666555555555 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.16   1.4e+02      41      65 ..      46      70 ..      39      77 .. 0.74
   2 ?   -2.1   0.2       5.4   4.6e+03      41      50 ..     152     161 ..     134     171 .. 0.48
   3 ?   11.2   0.1   0.00037      0.32      12      42 ..     184     214 ..     181     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.16
     DUF5446 41 ekeeerldllekElkdLvlCigkle 65
                ++  + l+ le  l+dL   ++ +e
  CDO70529.1 46 NELKATLSALEADLEDLEESVNVVE 70
                5667788888888888877776655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.4
     DUF5446  41 ekeeerldll 50 
                  +++e +d +
  CDO70529.1 152 RQQDEAIDSI 161
                 2233333333 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00037
     DUF5446  12 qlLeeiEeeltevEkelseavneteaekeek 42 
                  +L + E+ +++ E +ls a+++ ++  +++
  CDO70529.1 184 EMLDDLERGVDRSEAKLSTAMKKMRKFIRQT 214
                 69********************999876665 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2       0.2   1.7e+02      23      44 ..      47      68 ..       7     107 .. 0.73
   2 ?    9.3   0.1    0.0015       1.3      20      78 ..     150     208 ..     148     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.2
      DUF948 23 klkktldeaaatieelekqvdp 44
                +lk tl++++a +e+le+ v+ 
  CDO70529.1 47 ELKATLSALEADLEDLEESVNV 68
                4455555555555555554443 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0015
      DUF948  20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteava 78 
                 +l++  + +d++a t+++l +q++ + +e+ + ++   +l  +v +  +k+ + +++++
  CDO70529.1 150 ILRQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKMR 208
                 566778899*************************************9999999998775 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.035        30       2      29 ..      48      75 ..      47      84 .. 0.86
   2 ?    1.7   0.0      0.34   2.9e+02       6      45 ..     151     190 ..     145     193 .. 0.83
   3 ?    6.1   0.1     0.015        12       8      43 ..     181     209 ..     174     214 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.035
        XhlA  2 ikerlerietkldnleervdkleekaae 29
                +k  l  +e++l++lee v+ +e   a+
  CDO70529.1 48 LKATLSALEADLEDLEESVNVVETTGAR 75
                5777889999*******99999998876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.34
        XhlA   6 lerietkldnleervdkleekaaeaeekiknleedlkkle 45 
                 l + ++ +d++  ++++l e a  + ++i +  e l++le
  CDO70529.1 151 LRQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLE 190
                 5567888999999999999999999999998888888887 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.015
        XhlA   8 rietkldnleervdkleekaaeaeekiknleedlkk 43 
                 ++        e +d+le+  ++ e+k+  + +++ k
  CDO70529.1 181 EHV-------EMLDDLERGVDRSEAKLSTAMKKMRK 209
                 444.......44566666666666666666655554 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.013        11      11      36 ..      47      72 ..      44      81 .. 0.73
   2 ?    0.4   0.1         1   8.9e+02      13      31 ..      88     106 ..      78     108 .. 0.61
   3 ?    2.4   0.0      0.25   2.2e+02       9      35 ..     158     188 ..     152     188 .. 0.74
   4 ?    3.0   0.0      0.16   1.4e+02       2      24 ..     186     208 ..     185     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
   FlaC_arch 11 klsteletvkkeneelsksveelken 36
                +l+ +l+ +++++e+l++sv+ ++ +
  CDO70529.1 47 ELKATLSALEADLEDLEESVNVVETT 72
                56777888888888888888877765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1
   FlaC_arch  13 steletvkkeneelsksve 31 
                    ++ v++  e+l+ +ve
  CDO70529.1  88 RRYVNHVRRVVENLRAEVE 106
                 4456667777777777666 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.25
   FlaC_arch   9 lsklsteletvkken....eelsksveelke 35 
                 ++++  +l+t+ ++     +e+ + ve+l++
  CDO70529.1 158 IDSIAGTLNTLHEQAglmgQEIGEHVEMLDD 188
                 5666777788777754444899999999986 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.16
   FlaC_arch   2 idelEnklsklsteletvkkene 24 
                 +d+lE  +++ + +l+t+ k++ 
  CDO70529.1 186 LDDLERGVDRSEAKLSTAMKKMR 208
                 589*************9988775 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.5    0.0049       4.2     143     197 ..      10      67 ..       2      75 .. 0.84
   2 ?    8.0   1.9    0.0024         2     144     205 ..     138     202 ..     134     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0049
   Laminin_I 143 leeaeaelkaAqkL...LsrvqtllqklqeenkaLkealrdsLaeyeakLsDlrelle 197
                 ++e+   l++A+ L   + r+++  q+  ee+    ++l+  L+  ea L+Dl+e ++
  CDO70529.1  10 QAEVQGSLQNAETLrasYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEESVN 67 
                 66666777788887666779**999**9****9999******************9876 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0024
   Laminin_I 144 eeaeaelkaAqkLLsrvqtllqklqeenkaLkeal...rdsLaeyeakLsDlrelleeAaaktrd 205
                 ++ae  +++ q  L +  + + ++   +++L e++    ++++e+ + L+Dl+  +++++ak   
  CDO70529.1 138 AQAEWAKQEQQMILRQQDEAIDSIAGTLNTLHEQAglmGQEIGEHVEMLDDLERGVDRSEAKLST 202
                 678999999999*******************999633369*********************9765 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.1    0.0021       1.8     235     323 ..      12     107 ..       3     119 .. 0.72
   2 ?    3.9   0.3     0.035        30      92     121 ..     177     206 ..     120     214 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
      HMMR_N 235 elsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekcklle.........kekeelvreeeekeqtlsaEleelkeklkl 323
                 e++   +++e  +     ++++++   +e+   +++L++   +l++  +dl+e ++++e         +e e  v e +   +++   +e+l+ +++ 
  CDO70529.1  12 EVQGSLQNAETLRASYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEESVNVVEttgarlfglEESE--VMERRRYVNHVRRVVENLRAEVEG 107
                 5566666677777788888889999999999999*************************7777777554444..555555555555555555555555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.035
      HMMR_N  92 qergeqdkrlqaleeelkkveakLlaavre 121
                 qe ge    l +le  + + eakL++a++ 
  CDO70529.1 177 QEIGEHVEMLDDLERGVDRSEAKLSTAMKK 206
                 677777788889999999999999999875 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.3   0.00037      0.32      47     142 ..       8      99 ..       3     109 .. 0.88
   2 ?    2.6   1.5      0.17   1.4e+02      50     119 ..     138     207 ..     130     216 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
  Jnk-SapK_ap_N  47 eeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklherete 142
                    + +ae++   ++ e+L+  y r ++  +   eel  + ++++   ++l++ +e+lee ++ +e     +  +l  lee+e  ++++y +  +r  e
     CDO70529.1   8 AVQAEVQGSLQNAETLRASYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEESVNVVE----TTGARLFGLEESEVMERRRYVNHVRRVVE 99 
                    6789999********************************************************....88999999999999998888776555554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.17
  Jnk-SapK_ap_N  50 aeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadql 119
                    a++e  ++e + +  ++++       + ++l+e    + +e  e+ e++ +le  +++ e+k++ a +++
     CDO70529.1 138 AQAEWAKQEQQMILRQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKM 207
                    4444444444444555555555555555556666666666666666666666666666665555554444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3    0.0021       1.8      53     107 ..      35      89 ..       5     113 .. 0.74
   2 ?    4.3   1.1     0.066        56      13      72 ..     146     209 ..     128     217 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0021
      APG6_N  53 eeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                 + + e+l  +++el + L +le+  e+le+ ++  e + ++l   ee +++e++ 
  CDO70529.1  35 QPDSEELFWARNELKATLSALEADLEDLEESVNVVETTGARLFGLEESEVMERRR 89 
                 4445566666778888888888888888888888888888888888888877765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.066
      APG6_N  13 eldkqleqaekerdaYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelleeLke 72 
                 e +  l+q+++ +d+    l++l++++    +    + e l++le+ +++ e++ +++++++++
  CDO70529.1 146 EQQMILRQQDEAIDSIAGTLNTLHEQAGLMGQeigeHVEMLDDLERGVDRSEAKLSTAMKKMRK 209
                 4455567777777777777777777766655566665555666666666666666666665555 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3    0.0003      0.25      47      94 ..      20      72 ..       4      76 .. 0.70
   2 ?   -0.3   1.7       1.8   1.5e+03      82      82 ..     155     155 ..      80     210 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0003
     DUF4140 47 atildvqvervpnreaeee.....elkalraeleeledelaaledelaaaear 94
                a  l  ++ r  n+ ++++     + ++l+a+l +le++l++le++ +++e++
  CDO70529.1 20 AETLRASYLRIRNTAQPDSeelfwARNELKATLSALEADLEDLEESVNVVETT 72
                4444444444444444444556989**********************999875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.8
     DUF4140  82 a 82 
                 +
  CDO70529.1 155 D 155
                 1 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6      0.01       8.6      70     117 ..      17      64 ..       5      72 .. 0.53
   2 ?   -2.5   0.0       5.7   4.9e+03      64      81 ..      89     106 ..      81     114 .. 0.58
   3 ?    6.3   2.7     0.011       9.5      29     108 ..     134     214 ..     128     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.01
  TPR_MLP1_2  70 kaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                  + +++l+a+  + +++ +   e++   ++el+  ls le+ +edl+e
  CDO70529.1  17 LQNAETLRASYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEE 64 
                 444555555555555555555555555555555555555555555544 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.7
  TPR_MLP1_2  64 eelnelkaeiaelkaeae 81 
                   +n+++  +++l+ae+e
  CDO70529.1  89 RYVNHVRRVVENLRAEVE 106
                 444555555555555544 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.011
  TPR_MLP1_2  29 edlekqaeiakeaqqkYerelvkhaed.vkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelsel 108
                 ed  +qae ak+ qq   r+  +  +  + +l++l e++  + +ei e  + +++++  +++se+++++  ++++k ++++
  CDO70529.1 134 EDEDAQAEWAKQEQQMILRQQDEAIDSiAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKMRKFIRQT 214
                 666778888888888766665555444145899***********************************9999999887776 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.5    0.0049       4.2      31      97 ..       9      75 ..       4      81 .. 0.71
   2 ?    0.3   0.0      0.42   3.6e+02      59      83 ..      83     107 ..      77     115 .. 0.82
   3 ?    3.3   2.0     0.049        42      41     114 ..     141     212 ..     129     217 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0049
     DUF3450 31 aaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeiere 97
                 +a++q   ++ +  ++++l+  ++++   e+l + +++l++ ++++e+++++lee+ + +e + ++
  CDO70529.1  9 VQAEVQGSLQNAETLRASYLRIRNTAQPDSEELFWARNELKATLSALEADLEDLEESVNVVETTGAR 75
                4555666666666666666666666777778888888888888888888888888888888877665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.42
     DUF3450  59 eleslevyneqlerlvasqeqeias 83 
                 e+ + + y ++++r+v+++++e++ 
  CDO70529.1  83 EVMERRRYVNHVRRVVENLRAEVEG 107
                 6667788999999999999999875 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.049
     DUF3450  41 klddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeqfve 114
                 +++++ q++   +r+  e ++s++   + l ++   + qei +  e ++++e+  ++ +  l + ++++++f++
  CDO70529.1 141 EWAKQEQQMI--LRQQDEAIDSIAGTLNTLHEQAGLMGQEIGEHVEMLDDLERGVDRSEAKLSTAMKKMRKFIR 212
                 3444444433..44445555555555555555555555555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.50
# Mc/sec: 1333.64
//
Query:       CDO70530.1  [L=631]
Description: hypothetical protein BN946_scf184569.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-11   42.1   5.1    4.4e-09   36.1   1.2    2.3  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0003   20.6   1.8     0.0011   18.8   0.6    2.2  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00068   19.4   4.4    0.00068   19.4   4.4    2.2  2  Prok-RING_4   Prokaryotic RING finger family 4
     0.0014   18.9   5.6     0.0043   17.4   1.7    2.4  2  zf-RING_2     Ring finger domain
  ------ inclusion threshold ------
      0.016   15.1   2.2       0.18   11.8   0.5    2.3  2  zf-RING_5     zinc-RING finger domain
       0.85    9.7   6.0         11    6.2   0.9    2.6  2  zf-RING_UBOX  RING-type zinc-finger


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   1.2   1.5e-12   4.4e-09       3      33 ..     431     461 ..     429     467 .. 0.92
   2 !    7.6   0.1    0.0012       3.5      36      49 ..     534     547 ..     528     548 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.5e-12
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHH CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekl 33 
                 +eC++Cl++pr+v+llpC+Hlv+C +Ca ++
  CDO70530.1 431 SECLLCLSSPREVILLPCRHLVACRDCALNM 461
                 69**************************887 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
                 TT-B-TTT--B--E CS
  zf-C3HC4_3  36 rkkkCpiCrrpiek 49 
                 +   Cp+Cr+p+++
  CDO70530.1 534 KGWFCPVCRQPYTS 547
                 6667*******986 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.6   3.5e-07    0.0011       1      31 [.     433     463 ..     433     473 .. 0.92
   2 ?    0.0   0.0      0.27     8e+02       1      10 [.     538     547 ..     531     553 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.5e-07
                 -TTT-S--SS-E.E-TTS--.B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepnelleCkHs.fCskCirkilk 31 
                 C +Cl+ + e   ll+C+H   C++C +++++
  CDO70530.1 433 CLLCLSSPREVI-LLPCRHLvACRDCALNMIE 463
                 99********99.*******99********98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.27
                 -TTT-S--SS CS
    zf-C3HC4   1 CpiCleeake 10 
                 Cp+C + ++ 
  CDO70530.1 538 CPVCRQPYTS 547
                 8888887765 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   4.4   2.3e-07   0.00068       1      24 [.     433     457 ..     433     462 .. 0.95
   2 ?    0.9   0.1      0.14   4.1e+02      33      38 ..     538     543 ..     530     547 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.3e-07
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeC 24 
                  C+lC ++++++il pC Hl  C++C
   CDO70530.1 433 CLLCLSSPREVILLPCRHLvACRDC 457
                  *******************77**** PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
  Prok-RING_4  33 CPlCqr 38 
                  CP+C++
   CDO70530.1 538 CPVCRQ 543
                  ****97 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.7   1.4e-06    0.0043       2      34 ..     432     462 ..     431     465 .. 0.87
   2 ?    2.6   0.1     0.058   1.7e+02      39      44 .]     534     542 ..     525     550 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
   zf-RING_2   2 eCpICleelssadsvlllpCgHv.fhreClerwl 34 
                 eC +Cl   ss+++v+llpC+H   +r+C+ +++
  CDO70530.1 432 ECLLCL---SSPREVILLPCRHLvACRDCALNMI 462
                 8****8...9999*********769****98765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.058
   zf-RING_2  39 t...CPlCr 44 
                 +   CP+Cr
  CDO70530.1 534 KgwfCPVCR 542
                 155688887 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   5.9e-05      0.18       4      32 ..     432     461 ..     431     472 .. 0.86
   2 ?    2.2   0.0     0.059   1.8e+02       2       9 ..     538     545 ..     529     557 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
   zf-RING_5   4 kCfeklskeekfyltsCgHi.fCekClkkl 32 
                  C  +ls+ ++++l++C H  +C +C+ + 
  CDO70530.1 432 ECLLCLSSPREVILLPCRHLvACRDCALNM 461
                 578888888**********879****9875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.059
   zf-RING_5   2 CnkCfekl 9  
                 C++C++++
  CDO70530.1 538 CPVCRQPY 545
                 66666666 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.9    0.0035        11       1      25 [.     433     458 ..     433     475 .. 0.66
   2 ?    5.4   0.4    0.0063        19       1      10 [.     538     550 ..     538     558 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0035
  zf-RING_UBOX   1 CpIClelftdP..lv.lpCGH.tFCreCl 25 
                   C  Cl+    P  ++ lpC H + Cr+C 
    CDO70530.1 433 CLLCLS---SPreVIlLPCRHlVACRDCA 458
                   445554...45553526****557****8 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0063
  zf-RING_UBOX   1 CpIClelft...d 10 
                   Cp+C++++t   +
    CDO70530.1 538 CPVCRQPYTsllR 550
                   ********95550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4142.90
//
Query:       CDO70531.1  [L=147]
Description: hypothetical protein BN946_scf184569.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-22   79.1   0.0    6.9e-22   78.5   0.0    1.3  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   3.8e-26   6.9e-22       3     127 ..      28     144 ..      26     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 3.8e-26
                     GGTSSTTTTTTTTT-..S--........S--.........---..GGG..---...EEEEHHHHHHTTTTGTTS.------EEEGGGTTTTSSS. CS
  Ribosomal_L27A   3 ktgGrGhkGqkkrsg..vkk.kpg.feGGqmplyrrlpkrGfk..nskfkkey...kvvnlkdLdelideerle.ladeaeeidleelaeaglik 87 
                     ++gGrG +G +++++  ++k +pg f  G++         G++  +   +++    +v+n+++L++l++ee+   l +++e++ + +        
      CDO70531.1  28 HPGGRGLAGGQHHHRtnFDKyHPGyF--GKV---------GMRrfH--LTRNLqwcPVINVDKLWTLVPEEEKAaLTENSEVVPVIDT------- 102
                     78**********999999999***99..***.........998444..34555678**************998744455555544333....... PP

                     ...SE.EEE--S---..--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  88 kkdgv.Kvlgkgeltk.klkvkaskfSkkAkekIeaaGGkve 127
                      ++g+ Kvlg+g+l+k +++vka+ +S+kA++kI++aGG v 
      CDO70531.1 103 LQHGYgKVLGNGQLPKlPFIVKARFVSRKAEAKIKEAGGVVK 144
                     255***********9967*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 904.21
//
Query:       CDO70532.1  [L=141]
Description: hypothetical protein BN946_scf184569.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-26   92.4   0.0    1.4e-26   92.0   0.0    1.2  1  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
    2.2e-12   46.2   0.0    3.4e-12   45.6   0.0    1.3  1  RNA_pol_L    RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
      0.016   15.4   0.0      0.029   14.6   0.0    1.3  1  Rio2_N       Rio2, N-terminal


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   2.3e-30   1.4e-26       2      74 ..      31     103 ..      30     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2.3e-30
                  EEEEEES--HHHHHHHHHHHTTSTTEEEEEEECSSTTTSEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2   2 ltfeingEDhTLgnlLrhlllknpsVefagYkipHPlepkmnlriqtkssnnpleaLkkalkdlldicdelee 74 
                  +t++i ++DhTL+nlLr +ll+ p+V fagYk+pHPl+p + l+iqt++s +p+++L+ a+++l+ ++ +le 
   CDO70532.1  31 ATIKIVKQDHTLANLLRSQLLSMPQVLFAGYKVPHPLQPYFLLKIQTDGSMTPTQVLETACTKLIGTLATLEA 103
                  89******************************************************************99985 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   5.8e-16   3.4e-12       3      66 ..      34      95 ..      32      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 5.8e-16
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  3 llrgvdhtlgNaLRrillsevpgvaiea........pvvkvntdkdklilevetdgslkPeealkeAlkiLk 66
                 + ++dhtl+N LR  ll ++p+v +++        p          + l+++tdgs++P+++l+ A+++L+
  CDO70532.1 34 KIVKQDHTLANLLRSQLL-SMPQVLFAGykvphplqPY---------FLLKIQTDGSMTPTQVLETACTKLI 95
                57889*************.**********998877776.........**********************997 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.9e-06     0.029      12      66 ..       9      63 ..       6      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-06
      Rio2_N 12 LtavEmgmrnhevVptelieeisrlkeeevkkrlsrllkaklisrktakydGYkL 66
                L  +E g r  ev   ++i + + +k  + ++ l +ll+ +l+s  ++ + GYk+
  CDO70532.1  9 LYVLEEGERPVEVTEDTKIPNAATIKIVKQDHTLANLLRSQLLSMPQVLFAGYKV 63
                5678*************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 933.68
//
Query:       CDO70533.1  [L=1807]
Description: hypothetical protein BN946_scf184569.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-22   79.1   0.0    1.5e-21   77.0   0.0    1.9  2  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    2.7e-08   33.6   0.0    6.3e-08   32.5   0.0    1.7  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    3.6e-07   30.5   0.0      8e-07   29.3   0.0    1.6  1  RNase_H          RNase H
    8.2e-06   26.5   0.1    0.00028   21.6   0.0    2.6  2  zf-RVT           zinc-binding in reverse transcriptase
  ------ inclusion threshold ------
      0.041   13.4   0.1       0.12   11.8   0.1    1.9  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
      0.093   12.6   2.1        0.3   10.9   1.9    1.9  2  zf-CCHC_6        Zinc knuckle
       0.37   10.5   2.9        0.9    9.3   2.9    1.7  1  zf-CCHC_5        GAG-polyprotein viral zinc-finger
        2.8    8.6   8.6       0.48   11.1   3.4    2.4  3  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
          3    8.1   5.2       0.64   10.3   1.3    1.8  2  THOC7            Tho complex subunit 7


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   7.5e-25   1.5e-21       3     187 ..    1021    1214 ..    1019    1277 .. 0.88
   2 ?   -1.1   0.0      0.55   1.1e+03       8      34 ..    1441    1463 ..    1434    1473 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 7.5e-25
                  -TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GG CS
       RVT_1    3 Kkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleel 88  
                  K+g      ++ +Rpi+ll++  k+l++ +a+ L   +  ++ll + q+g r gr t+d++    + +k ++++++   +++lD+k+aF   + ++l
  CDO70533.1 1021 KPGkadytiAKAWRPIALLNCMSKILSRCVADVLVFEAeqRSLLANLQFGGRAGRTTSDSIhlvAKTVKDAWRRGNVASVVFLDIKSAFPAASPARL 1117
                  55555688889*********************888877999*********************998888888************************** PP

                  GGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHH CS
       RVT_1   89 lrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelle 185 
                  ++ l + +vp++ ++++k  l +r+++++++   s ++ +  g+ qG++lS +l+ ++ ++l+ + ++   g   +  +DD+ +++++k+ +  + +
  CDO70533.1 1118 YHNLLSRGVPHEYVDWLKVKLDGRQTCLKFDDYVSDPFDILSGIDQGCPLSVILYAFYNSDLIDSADTT-DGERAVGSMDDVALVVTGKTYA-VCHD 1212
                  *******************************9988********************************96.8***************997753.3334 PP

                  HH CS
       RVT_1  186 av 187 
                  +v
  CDO70533.1 1213 KV 1214
                  44 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
                  -EEE.......-THHHHCTB--...... CS
       RVT_1    8 syRp.isllsvdykalnkliakrLkdvl 34  
                   yRp +     +yk+ +++ a rL + +
  CDO70533.1 1441 AYRPwL-----NYKDTERIAATRLHPRW 1463
                  799*77.....*************9876 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.2e-11   6.3e-08       2     118 ..     607     738 ..     606     739 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.2e-11
  Exo_endo_phos_2   2 liisvYippsd..elenlestlekllselksp..kiiilGDfNakhplWgsedtds......sargeeLiefleehslsllnllksg.ptfkss 84 
                      +++++Y+  ++  +++ ++++ ++l+     +  +++ lGDfN++hp+W+s++++        +r+e Lie l  ++l+  + l+ g pt + +
       CDO70533.1 607 HLFNLYVDGDHdtAIRAASRAGQRLVLGEAGEahHHVWLGDFNRHHPAWDSPTNHHlfttdsLERAEVLIEHLALFDLQ--QALPAGiPTLEAT 698
                      567777777776655555555555544444344799***************877779998889****************..9999999*****9 PP

  Exo_endo_phos_2  85 ng..sstiDltltsdnlals....kleleeedlgSDHrpi 118
                      ++   +  D +++s+ l+ +    + e  +  + +DH pi
       CDO70533.1 699 RTknLTRPDNVFASPGLLARmrscVVERAKRPTKTDHFPI 738
                      99644789*********99999887777778999999998 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     4e-10     8e-07       3     142 ..    1490    1627 ..    1488    1628 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4e-10
                  SEEEEEEEEEECTTTCEEEEEEECTT....EEEEEEEC...CCCHHHHHHHHHHHHHHHTT.SC....SEEEEEES-HHHHHHHHCCCHHHHHTTSS CS
     RNase_H    3 avvvYtDGsclgnpgeggagavlykeg..arnisaple...eaqtnnraELsAvieaLkalksd....ekvniytDSkYvvkgitqwvhrwkknawk 90  
                  a+ vYtDGs   + g  ga+a+ly  g  + ++ + +       t   aE+ A    ++ l+++    ++  i  D   +++ + + + ++   ++ 
  CDO70533.1 1490 AYRVYTDGSDI-EGGV-GAAALLYAPGraQPKVLQLYLgpsTHHTVYEAEIVATLLGVELLRREthctQQASIALDNMAAIQ-ASE-LRTTGPARY- 1581
                  5679*****55.3444.5555555555433344444442346778889******9999866555445566669999988888.555.333322222. PP

                  SETTSSBHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H   91 ttseqkpvknkdlaellkelak.kkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142 
                   t+    ++       lk + + + +++l+wv+gHa vp gNe+aD++Ak+aa
  CDO70533.1 1582 LTD----LFH-AAVRNLK-IDRpNLRLTLRWVPGHADVP-GNEAADEAAKAAA 1627
                  232....223.2233332.3333799************9.**********987 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.2     4e+02      47      79 ..     380     409 ..     371     414 .. 0.79
   2 !   21.6   0.0   1.4e-07   0.00028      27      80 ..    1695    1748 ..    1682    1751 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
      zf-RVT  47 adnllkrgiesssrCqlCgqeeEtieHlfleCp 79 
                 ++ l +r +e  +rC  C++      H   eC+
  CDO70533.1 380 RKVLVRRDMEEPKRCARCQRY---DGHYARECK 409
                 56799*************995...456666665 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.4e-07
      zf-RVT   27 kappkvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80  
                   +p ++  +l    +n++p ++ l++ g +  + C+ C+qe Et+ H +++Cp 
  CDO70533.1 1695 DIPRRHANLLVQFRTNHVPLQSYLHRFGRAPAAPCPPCQQEPETVPHYLFACPT 1748
                  68899999999999**************************************96 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.3e-05      0.12     137     209 ..     632     717 ..     544     735 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
                    HHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHH.................SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Exo_endo_phos 137 ealnadrgapvivaGDfNarpsdddsrvlrtrglalapapv.................glyllgggptptyvtraggsrlDrilasp.ala 209
                      + a++ ++ +++GDfN ++ ++ds+        +    +                 ++ + g  +   ++t++ +   D ++asp  la
     CDO70533.1 632 VLGEAGEAHHHVWLGDFNRHHPAWDSPTNHHLFTTD----SleraevliehlalfdlqQALPAGIPTLEATRTKNLTRP-DNVFASPgLLA 717
                    55678888999**************99833111111....011112222333334443333333333334444444444.77777774444 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.9   0.00015       0.3       3      23 ..     437     457 ..     435     462 .. 0.89
   2 ?   -3.5   0.0         5     1e+04      19      28 ..    1746    1755 ..    1745    1761 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
   zf-CCHC_6   3 KCknCGAFGHtarSkrCPmkc 23 
                 KC nC   GH a  k CP  +
  CDO70533.1 437 KCANCATHGHAAWDKNCPTLR 457
                 9*****************755 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5
   zf-CCHC_6   19 CPmkcwngal 28  
                  CP +  ++a+
  CDO70533.1 1746 CPTYTLHRAV 1755
                  ****999987 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.9   0.00045       0.9       2      23 ..     391     413 ..     390     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00045
                 --B-TTT-SS.BS-TTT---SEE CS
   zf-CCHC_5   2 pglCpRCkkg.kHwardChskfd 23 
                 p +C RC +   H+ar+C++  d
  CDO70533.1 391 PKRCARCQRYdGHYARECKAEQD 413
                 78******9626*******9766 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.4   0.00024      0.48      23      86 ..     100     163 ..      82     170 .. 0.84
   2 ?   -2.5   0.0         4     8e+03      76      99 .]     811     834 ..     790     834 .. 0.71
   3 ?   -2.6   0.0       4.3   8.7e+03       3      18 ..    1546    1561 ..    1545    1570 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
  HIP1_clath_bdg  23 eeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqls 86 
                       +er+ ++l+ +l++  ++ e ++++ ++ +e+++re+e++ ael  +  s+++ e++  +  
      CDO70533.1 100 AVLERAEDQLTLRLDEHASHVETRVADLTQGVERMRREMETTVAELRDACDSVQRAEETLREAR 163
                     4579999***********************************************9998876665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4
  HIP1_clath_bdg  76 esseqsgeqlssqlaaLqaEkesL 99 
                     +s+  ++  +s+ l+ +++Eke+L
      CDO70533.1 811 ASTPYTKRWWSKDLSRMRKEKERL 834
                     455566777899999999999987 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.3
  HIP1_clath_bdg    3 dLLrKnAevtkqlsva 18  
                      +LLr+++  t+q s a
      CDO70533.1 1546 ELLRRETHCTQQASIA 1561
                      89*********99987 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.3   0.00032      0.64      33      97 ..      97     162 ..      57     168 .. 0.90
   2 ?   -3.4   0.1       5.4   1.1e+04      92     116 ..     221     245 ..     208     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
       THOC7  33 steeeleqlkedllldfaafelsie.rlqllakanerereryeaekeeieseieavreeieelkaq 97 
                  + + le+++++l+l++ +  +++e r+  l++  er r+++e+  +e+ +++ +v+   e l++ 
  CDO70533.1  97 VSRAVLERAEDQLTLRLDEHASHVEtRVADLTQGVERMRREMETTVAELRDACDSVQRAEETLREA 162
                 456778999*************************************************99999975 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.4
       THOC7  92 eelkaqLeearatranrkeydelae 116
                 ++l ++L+ ++   + r ++de+a+
  CDO70533.1 221 DDLGNRLTSEQVCARARAAIDEMAR 245
                 5788899999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:00.49
# Mc/sec: 11132.89
//
Query:       CDO70534.1  [L=143]
Description: hypothetical protein BN946_scf184573.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 875.25
//
Query:       CDO70535.1  [L=148]
Description: hypothetical protein BN946_scf184573.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-12   46.2   0.8    5.8e-12   45.9   0.8    1.3  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.8   3.2e-16   5.8e-12     128     211 ..      53     127 ..      23     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 3.2e-16
     DUF3328 128 levfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiLrqsimChaDvtlitfnwvkgtkgpvpdfntehqCrdfe 211
                 + + HqLHC++  r+al ++          +++    Hl HC+++Lr s +C aD+tl++     + +++ ++ + eh C d+ 
  CDO70535.1  53 VGITHQLHCMRAYRQALAQDAP-------LSAH-QAGHLGHCLNFLRMSTLCAADTTLEPPDALSR-NHTRDRGGGEHVCFDWP 127
                 5678*************88888.......3333.367**********************7666554.5555555789*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 942.88
//
Query:       CDO70536.1  [L=293]
Description: hypothetical protein BN946_scf184573.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-08   34.5   0.0    3.9e-08   33.8   0.0    1.3  1  But2      Ubiquitin 3 binding protein But2 C-terminal domain


Domain annotation for each model (and alignments):
>> But2  Ubiquitin 3 binding protein But2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.2e-12   3.9e-08      25     131 ..     159     268 ..     139     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.2e-12
        But2  25 tvsstdvstifnFdipasaagktCslvflfptqsql..etssytlsGsgkfkfskla..apatest.tynnkPavkeelgkttlspGnaytiasfpCpa 118
                 +v+ + ++ti +F   +    ++Cslvf++p +      ++++++     f++++l+  +p +  t +y ++P++ke++++++ + G++  i+ fpC  
  CDO70536.1 159 QVTVK-TNTIAQFRTVDFG-MEECSLVFRLPGSGHRieSKEPFQFDPRSVFDIYRLEssKPLDVRTlSYRTRPPMKEKVATISPRAGEDTLITHFPCSW 255
                 45555.89*****988774.69*********9998656788899999999******998555544449*****************************99 PP

        But2 119 gqavsyevssagd 131
                  + +++ev+ a++
  CDO70536.1 256 SSLHTFEVACAEG 268
                 9999999987744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1842.99
//
Query:       CDO70537.1  [L=214]
Description: hypothetical protein BN946_scf184573.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   48.4   0.3      1e-12   48.4   0.3    1.9  2  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.8     0.056     1e+03      12      42 ..      14      44 ..       4      65 .. 0.73
   2 !   48.4   0.3   5.6e-17     1e-12     125     215 ..     115     193 ..     105     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.056
     DUF3328 12 rllllvlllllllllllilssllsssekkaa 42
                r +++++l ll + +++ l+sl+  +++++ 
  CDO70537.1 14 RAIIALVLSLLGCNFIFKLASLHRLHRASHV 44
                3367777788888888888888887777765 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 5.6e-17
     DUF3328 125 iaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiLrqsimChaDvtlitfnwvkgtkgpvpdfntehqCrdfealld 215
                 + +++++HqL CL+++r +l + +      +e+++      + HC++++rq i+C++D++l +++    +++pv+  n  ++C d++a+ d
  CDO70537.1 115 PFMVSMLHQLRCLDIMRDQLAKPRA----QREEQP------ARHCMNYIRQMILCRGDTQLDPYQYPS-NNKPVDA-NPIRRCLDWRAVYD 193
                 5789****************44444....333333......57*******************999955.3666666.8889******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1375.33
//
Query:       CDO70538.1  [L=387]
Description: hypothetical protein BN946_scf184573.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-22   80.2   0.0    2.3e-22   80.2   0.0    2.3  2  DUF1917   Domain of unknown function (DUF1917)


Domain annotation for each model (and alignments):
>> DUF1917  Domain of unknown function (DUF1917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.3e-26   2.3e-22      87     245 ..      29     195 ..      17     203 .. 0.80
   2 ?   -3.6   5.0      0.45     8e+03      12      49 ..     260     318 ..     252     372 .. 0.55

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.3e-26
     DUF1917  87 gpWiyianpaedeapeeegsdlaklveegtelLqeleekkqelekena...kkkkkskaalkrelnke.rkeleeeilelAretrvvsGkWmLfvkpee 181
                  +W++++    d     +   +++ v+++  lL+e++e  ++++k+ +   +++kk+ +  k+el++e ++e++e++ e+A++ + vsGkW++f +p++
  CDO70538.1  29 AKWLWVRKS--D--TLPNAMGIKEAVQDASALLSEITERVEKIQKDPSipiRSNKKKGMKSKKELREEaQREATEKLKEIAQKHGYVSGKWLIFAPPDR 123
                 469999988..3..344556688899999999999999999999986533356667888889999888799**************************** PP

     DUF1917 182 vdevWkkvaeatakneLGi....aAkvat.sededkkkerLicvyTkDFeDkeD...VkRVLekLkelglvk 245
                 vd vW+++a++ +++ L      aAkvat  ++++ + ++L+cvy  D  D++    V+RVL + + ++l+ 
  CDO70538.1 124 VDVVWNTIANSLVSGPLSStsayAAKVATsPQNDTPHYNHLLCVYMPDIYDQDSvtaVMRVLLREHGMNLMG 195
                 *****************7533338*****6566667789*******99999986111567777777777765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.45
     DUF1917  12 eyweeihpkslatiqaelkaaskaaakeeeakeesaa.....................e 49 
                 ey++e++  ++a++++++++a++a++k+ + k +++a                     +
  CDO70538.1 260 EYFAEVNAAKCASAEEATAKAATAETKKPKPKLKKKAnddpfgsddedekdedkgkkpA 318
                 56666666666666555444444443333322222223455555555444444443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1794  (0.100061); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 2383.79
//
Query:       CDO70539.1  [L=735]
Description: hypothetical protein BN946_scf184573.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4968.10
//
Query:       CDO70540.1  [L=264]
Description: hypothetical protein BN946_scf184573.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1769.44
//
Query:       CDO70541.1  [L=390]
Description: hypothetical protein BN946_scf184573.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3213  (0.179207); expected 358.6 (0.02)
Passed bias filter:                      855  (0.0476881); expected 358.6 (0.02)
Passed Vit filter:                       347  (0.0193541); expected 17.9 (0.001)
Passed Fwd filter:                       123  (0.00686039); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.83u 0.35s 00:00:02.18 Elapsed: 00:00:00.57
# Mc/sec: 2077.64
//
Query:       CDO70542.1  [L=80]
Description: hypothetical protein BN946_scf184573.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.6   1.7      0.017   15.4   1.7    1.1  1  DUF3852   Protein of unknown function (DUF3852)


Domain annotation for each model (and alignments):
>> DUF3852  Protein of unknown function (DUF3852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.7   9.7e-07     0.017      28      70 ..       2      45 ..       1      57 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.7e-07
     DUF3852 28 gdvagaiestwkeaksqiktvvnnvvfpvidvilavl.lfvkla 70
                g + +ai s+++++ s i +v++ ++  ++ +++a+  +f  + 
  CDO70542.1  2 GSIVSAIGSAINAIISAIANVIETIISAIVMILVAIWdFFLSVD 45
                67899******************************974555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1226  (0.0683808); expected 358.6 (0.02)
Passed bias filter:                      746  (0.0416086); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 462.56
//
Query:       CDO70543.1  [L=401]
Description: hypothetical protein BN946_scf184573.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  113.4   0.4    5.9e-17   61.6   0.0    3.9  3  p450       Cytochrome P450
  ------ inclusion threshold ------
      0.073   13.7   0.0       0.23   12.1   0.0    1.8  2  TMEM141    TMEM141 protein family
       0.14   11.8   0.0       0.14   11.8   0.0    1.7  2  MotB_plug  Membrane MotB of proton-channel complex MotA/MotB


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-06    0.0083      46     205 ..       1     153 [.       1     166 [. 0.86
   2 !   61.6   0.0   9.8e-21   5.9e-17     280     369 ..     187     276 ..     182     278 .. 0.97
   3 !   29.9   0.9   3.8e-11   2.3e-07     371     441 ..     301     384 ..     296     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-06
                 EEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHH CS
        p450  46 vvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagesselditel 144
                 ++vl+++e +  +l k++++ s+r   +++a++   ++    +   g+ w++ Rr ++ ++  + + +++++  e + +++++l ++ ++       ++
  CDO70543.1   1 MIVLGTHEVAVDLLEKRSAKYSDR-VHSTMAYL-TGWDWALPIIPYGAWWRRSRRAFHEHFNASVIVRYRAVQLEAMGRFLRRLLESPEAF-----ERH 92 
                 688999999999999999999998.55555554.59****************************666999999999999999998888777.....79* PP

                 HHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHH CS
        p450 145 lskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkl 205
                 + ++  ++  ++++g+ +d  ed   +e+ +a  + +  +  + + l+ +fp l++lp+++
  CDO70543.1  93 IKHFIASSTIRLAYGVDVDKEEDTPYLEIATAAVATFAATFVPGKYLVETFPALRFLPSWM 153
                 *****************99888888888888888887777777888999999999999987 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 9.8e-21
                 HHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHH CS
        p450 280 stlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlya 369
                 +tl+ +++ +a +Pe+q + + E+d v+g +r p++dd    py+ a  kE  R + v+p+++ ++ t++ v rg+ ipkGt+v++n + 
  CDO70543.1 187 TTLMTFFLAMASYPEIQTRAQAELDAVVGTNRLPHFDDAGAAPYVVALMKECTRWRVVIPFGILHRSTEEDVYRGRRIPKGTIVVPNQWC 276
                 899***********************************************************************************9985 PP

  == domain 3  score: 29.9 bits;  conditional E-value: 3.8e-11
                 HT-TTTSSSTTS--GGGGB-TTS..............CTESSCTT--TTE..EGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTST CS
        p450 371 hrdpevfpnPeeFdpeRFldekg..............nskrksfaflPFG..aGpRnCiGerlArmelklflatlLqnFevelqpet 441
                  r++ ++p+PeeF+peR+l+e                +   + +a    +    + +C+G+ +A+ el++++a++L+ F++ + ++ 
  CDO70543.1 301 TREERYYPDPEEFRPERYLKEGTcdpgvldpgdiifgA---DTEALHCCSptSPVSACPGRDFAQAELFVVMASVLHAFTIRPARDA 384
                 68999****************88**9999999996541...4444443332245789***********************9986655 PP

>> TMEM141  TMEM141 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5     9e+03      33      47 ..     125     139 ..     117     146 .. 0.58
   2 ?   12.1   0.0   3.9e-05      0.23      18      74 ..     177     233 ..     168     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
     TMEM141  33 fvlgtaaafflqklv 47 
                  v+ +aa+f+  k++
  CDO70543.1 125 AVATFAATFVPGKYL 139
                 455566666655555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.9e-05
     TMEM141  18 YaeCqsrallkGlatfvlgtaaafflqklvkkklpyplkwnllvsvvagsvasykvt 74 
                 + +C+s  l++ l+tf+l++a+   +q+ ++ +l + + +n l     ++ a y v+
  CDO70543.1 177 WNACMSDMLFTTLMTFFLAMASYPEIQTRAQAELDAVVGTNRLPHFDDAGAAPYVVA 233
                 679***************************999999988888776666666666665 PP

>> MotB_plug  Membrane MotB of proton-channel complex MotA/MotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.14      17      44 ..     176     204 ..     166     213 .. 0.80
   2 ?   -3.6   0.4       1.5   9.1e+03      32      38 ..     365     371 ..     365     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
   MotB_plug  17 rWlvtYaDlm.tLLlaFFvlLfsmssvde 44 
                 +W +  +D++ t L++FF+ + s  ++ +
  CDO70543.1 176 PWNACMSDMLfTTLMTFFLAMASYPEIQT 204
                 599999998659*********99877766 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
   MotB_plug  32 FFvlLfs 38 
                 +Fv++ s
  CDO70543.1 365 LFVVMAS 371
                 7****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 2399.04
//
Query:       CDO70544.1  [L=753]
Description: hypothetical protein BN946_scf184573.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5196.90
//
Query:       CDO70545.1  [L=926]
Description: hypothetical protein BN946_scf184573.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-125  417.2   0.0   5.7e-125  416.8   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.8   0.0  3.2e-129  5.7e-125       3     324 .]     190     510 ..     188     510 .. 0.95

  Alignments for each domain:
  == domain 1  score: 416.8 bits;  conditional E-value: 3.2e-129
     Plavaka   3 nakeLlktiDslpsgdpewkseevkvegel.eeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweqq. 99 
                    ++++t D +p g+++w +++++++g+  ++  p+wm +eye++frdp++v+++++gnpdf+d++dy+P+r y+  ++g+r y+++m+g+w+w q+ 
  CDO70545.1 190 GRVHMYDTFDGIPVGEAPWDHFSISFNGTPpPGPLPSWMIREYEVFFRDPRKVLHNQIGNPDFKDDFDYVPKRMYN--DTGKRKYKDFMSGEWVWAQAd 286
                 5678************************6668999*****************************************..5689****************8 PP

     Plavaka 100 .ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipkl.kkikkskefrklfkrqlfHaclarilepLk 195
                  ++ +p  +ga ++p il+sDKTt+sv+tg++e+yP+Y+s G++++++rr a+rna++l+++L+ipk+ +++k++++frk f+r+lfH++l++i+e+L+
  CDO70545.1 287 eLSLNPrLHGAAFCPAILGSDKTTVSVATGQNEYYPLYMSNGWVTNSTRR-AHRNAITLIGFLAIPKTdRQYKDDPTFRK-FRRELFHTSLRHIFESLR 383
                 766445699*****************************************.*****************9999********.****************** PP

     Plavaka 196 eagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglkgviepFwedl 294
                 +++++  v+ cadg++rrv++++++yiaDypEqvl+ac+vqgwCpkc+a++++l++  ++++r++e t + + +  + +++lw++yg+++  +pF++ +
  CDO70545.1 384 AYMNDYDVVLCADGYYRRVVYGFGPYIADYPEQVLLACTVQGWCPKCMAPPDDLDSG-HHARRSHELTAAYIDTGLS-TRRLWEDYGIVSYLTPFTAYF 480
                 ******************************************************996.5589999999999888876.9******************** PP

     Plavaka 295 pradihelltpDlLHqlikgvfkdHlvkWv 324
                 pradihel++pDlLHq+ikg+fkdHlv+Wv
  CDO70545.1 481 PRADIHELISPDLLHQIIKGTFKDHLVTWV 510
                 *****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6175.95
//
Query:       CDO70546.1  [L=530]
Description: hypothetical protein BN946_scf184579.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-59  201.2   0.0    2.9e-58  197.8   0.0    2.3  1  p450      Cytochrome P450
  ------ inclusion threshold ------
      0.079   12.9   0.0        1.2    9.0   0.0    2.2  2  DUF1796   Putative papain-like cysteine peptidase (DUF1796)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   3.2e-62   2.9e-58       6     437 ..      60     498 ..      55     515 .. 0.83

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 3.2e-62
                 EHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEE..ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHH CS
        p450   6 plplvgnllqlgrkeelhevlrklqkkygpifrlk..lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfl 102
                 +++l+g+ l    +++  e ++k + + gp+fr+k  l + +++v  ++ av++++++  +++++   ++ +a+     +gkg++ a+g+++k +Rr+l
  CDO70546.1  60 AHWLWGHELVNF-QGQAAEMYTKWAARCGPFFRIKgaLFHPDIIVAADHAAVHHIFQNCYDYVKSPAFRPPVAN----LLGKGLVWAEGDEHKLQRRIL 153
                 678888765533.5999999**************84467999*****************999999988999998....89******************* PP

                 HHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH...HHHCHHHHCCCCCH.H CS
        p450 103 tptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss...llskssvqllllfp.l 197
                  p++ +      e       ++l + + +  g++ +++it++ s ++ld+ig+++Fg+ f++ ++ +++++ +  e  ++    +  ++ +l++    +
  CDO70546.1 154 SPAFSYC-----E-------SRLTNHVLSAGGAA-TVNITDYTSTCTLDIIGRVAFGHDFKSGQSTEAKQIHTSWEGHINtglQFGGFVAMLVMRALpF 239
                 *****77.....2.......23334444444555.699*****************************99999876654444654444444444433349 PP

                 HTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.....TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 198 lkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllak.....kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLak 291
                 +  l+tkl  ++ +a  ++ +++ kl     e  + + ++ rd l++ll a+     +++k+ + l++++++ ++++l++ G++Tt+  +s++L+ La+
  CDO70546.1 240 VTLLLTKLPLEAIRAGGRIREITTKLSMRLIEAGNVN-EKGRDILSILLRAErargkSASKD-AGLTNQQIVDNITTLIMVGHETTAGSMSFTLHSLAQ 336
                 9999999999999998888888888754444444444.59***********99987544555.69********************************** PP

                 SHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET.........T.....EEE-TT-EEEEEHHHHHT-TTT CS
        p450 292 nPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir.........g.....ylipkGtevivnlyalhrdpev 376
                 +Pe+q++lr Ei++  +d   ++ydd+q+l++ldav+kE LRlhp++p +++R+++kd vi+         g     + i +G++  ++ ++++ +p+v
  CDO70546.1 337 RPEIQQRLRDEIRQFGRD---LSYDDIQRLEFLDAVVKEGLRLHPASP-QTERVALKDDVIPlstpivtpsGekltsVRIAAGQVFHIPFSTIQVNPAV 431
                 ***********9887666...9**************************.********9988644444444336777789******************** PP

                 S.SSTTS--GGGGB-TTS.....CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEE CS
        p450 377 f.pnPeeFdpeRFldekg.....nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevel 437
                 + p++ eF+p+R+l   g     +        + F  GpRnCiG rlA+ e k++latl++n e++ 
  CDO70546.1 432 WgPDATEFNPDRWLTPGGvpppsELPHGWSGLVTFCDGPRNCIGYRLAIFEFKVILATLVRNLEFHD 498
                 ****************999995422234467899******************************995 PP

>> DUF1796  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.034   3.1e+02     109     142 ..      32      70 ..      26      90 .. 0.75
   2 ?    9.0   0.0   0.00014       1.2      77     132 ..     311     370 ..     280     389 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.034
     DUF1796 109 rrirrfeallssperkvlFirtviaenka.....kelle 142
                 + + r+ ++++s+ + ++F+r+   ++ a     +el++
  CDO70546.1  32 TDVHRLPRAIDSKADARTFFRSLQPRELAhwlwgHELVN 70 
                 3488*****************997666556666655555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00014
     DUF1796  77 pvkvwllfrnqhal...lfthhDlanneevkakfrrrirrfeallsspe.rkvlFirtvi 132
                   ++ +++  + ++    ft h la+ +e+++ +r  ir+f + ls ++ +++ F+  v+
  CDO70546.1 311 NITTLIMVGHETTAgsmSFTLHSLAQRPEIQQRLRDEIRQFGRDLSYDDiQRLEFLDAVV 370
                 3333333333333346689***************************99877777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.33s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3282.16
//
Query:       CDO70547.1  [L=349]
Description: hypothetical protein BN946_scf184579.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.18   11.9   3.1       0.23   11.6   0.1    2.7  3  Internalin_N  Bacterial adhesion/invasion protein N terminal


Domain annotation for each model (and alignments):
>> Internalin_N  Bacterial adhesion/invasion protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.3e-05      0.23       8      34 ..     116     142 ..     112     146 .. 0.93
   2 ?   -3.0   0.1      0.46   8.2e+03      14      19 ..     215     220 ..     203     238 .. 0.51
   3 ?   -2.1   0.0      0.23   4.1e+03      23      35 ..     259     271 ..     259     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
                   XXXXXXXXXXXXXXXXXXXXXXXXXGS CS
  Internalin_N   8 KklltvtlvLllsllvltsnGekvqAe 34 
                   K+++++ + L+l+ + l+ +G +v+A 
    CDO70547.1 116 KYIVILVVLLILGHWSLILQGVTVKAS 142
                   99***********************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.46
                   XXXXXX CS
  Internalin_N  14 tlvLll 19 
                   t+++ l
    CDO70547.1 215 TVFIEL 220
                   333333 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.23
                   XXXXXXXXXXGSX CS
  Internalin_N  23 vltsnGekvqAea 35 
                   v++s+G++ +A+ 
    CDO70547.1 259 VFSSTGHSFRAAH 271
                   6889******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2444.51
//
Query:       CDO70548.1  [L=231]
Description: hypothetical protein BN946_scf184579.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   31.0  25.2    4.2e-07   29.2  22.4    2.0  1  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.15   12.3   0.0          6    7.1   0.0    2.3  2  Phage_CII  Bacteriophage CII protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2  22.4   4.7e-11   4.2e-07     135     353 .]       1     213 [.       1     213 [. 0.74

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.7e-11
       MFS_1 135 ilgpllggllasslgWravfyilaivsllafv..lfllll.peepperkrkspkeeekgtgpaplvpawkallkdpvl.willialllfffgfsglltl 229
                 ++ pl++  +++   W+ v++++ +++l+ +v  +  + + ++ + + +r  + +    + +++l++ +k ++  +v+ +++l+a+++++ +  ++ ++
  CDO70548.1   1 MISPLVSTQFSQISRWSFVYLVHLGLLLVTLVmqI--FAFkFQGQADCARAIGLPP--PQSESSLLQRYKRVFCMRVVhLMALFAFVYVG-VEVSIGSW 94 
                 789999999999999***************99643..3333444444444444444..34555555568999999966336666666665.6666**** PP

       MFS_1 230 lplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdl 328
                 + +++   ++ +   ++++ ++l++ ++  +++ +  +s+ +g   r+++++ +l+++ l la++ v  s v+ ++ +++iG++lg +fp++++ a   
  CDO70548.1  95 IVTFVINLRHGG-PNSGYIPSGLFGGLM-LGRVALLPFSKLVGE--RRVIFVYILAVLGLELAVWQVE-SVVADAVCVAFIGIFLGPMFPIMTNHAGGI 188
                 ***966666666.344443344444443.336666666666666..7788888888888888888888.77888889999******************* PP

       MFS_1 329 appeeagtasglfntagslggalgp 353
                 +pp+     +g++ + g++g+a++p
  CDO70548.1 189 LPPDLISGGVGWIASWGAAGAAVFP 213
                 **********************987 PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00067         6      34      58 ..       7      31 ..       2      37 .. 0.84
   2 ?    2.9   0.0     0.015   1.3e+02      24      60 ..      41      82 ..      31      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00067
                TSSTTTHHHHHHHHHHHHHHHHHHT CS
   Phage_CII 34 GvdeskisrwktDwipkasvLlavl 58
                  + s+isrw   +   +++Ll  l
  CDO70548.1  7 STQFSQISRWSFVYLVHLGLLLVTL 31
                5677****************99866 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.015
                HHHHHHHHHHTS.....STTTHHHHHHHHHHHHHHHHHHTTT CS
   Phage_CII 24 lgqrkvaeaiGv.....deskisrwktDwipkasvLlavlef 60
                +gq   a aiG+     + s + r+k+ + +++  L+a++ f
  CDO70548.1 41 QGQADCARAIGLpppqsESSLLQRYKRVFCMRVVHLMALFAF 82
                68889999999744443456689*******999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1652.70
//
Query:       CDO70549.1  [L=433]
Description: hypothetical protein BN946_scf184579.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-25   87.7  36.7    9.5e-25   87.3  36.7    1.2  1  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.24   11.3   0.2        2.4    8.1   0.0    2.3  2  Importin_rep_2  Importin 13 repeat


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3  36.7   1.1e-28   9.5e-25       2     353 .]      61     415 ..      60     424 .. 0.79

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 1.1e-28
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa.....sslwlllvlrvl 94 
                 + ++f+++++ +++gp+lp  l++ + +s ++++l++ +  lg++ ++  +++l++rf  r  v+++ + + a+      fa     +++++++++  +
  CDO70549.1  61 CWSIFVAGWNDGTVGPLLP-RLQSVYSVSYAVVSLIFIINCLGFLTGASTYMYLTERF--RFgVMVVFASCVAIL----GFAlessaPPFPVFVIGFYF 152
                 6789***************.9************************************9..332444433333333....332223448888******** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv..lfllll................... 172
                 +G+g+++l ++++a++a ++   + +  +g++ a +++Ga+++pl++  +a    W+ +++++ +++++ ++  +  + +                   
  CDO70549.1 153 SGFGMSFLDAGSNAFVASLAE--NTSNKMGIMHALYGVGAMCAPLVSTQFARIHRWSFLYLVHIGLTFVNAIleI--MAFrfksqegtsritlliakhk 247
                 ******************997..699999**********************9999***************99553..4444578888888777744333 PP

       MFS_1 173 ..peepperkrkspkeeekgtgpaplvpawkallkdpvl.willialllfffgfsg....lltllplylqevlglsglllaglllallalvgailalla 264
                            ++p++   +  +a++ + +k++++ + + +++++++ ++     g    +  ++ +y+ + ++ +   ++++ +++++ ++ ++++ +
  CDO70549.1 248 eiG-------QPPPEKT--KESEAGVNK-YKQVFRLRAVhLMAFFIFTYV-----GvevtIGGWIVTYVIQERHGG-PNSGYISSGFFGGLT-VGRIAL 329
                 222.......2222222..334455566.999999996622333333333.....34456********77777777.355555555666665.6799** PP

       MFS_1 265 grlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  +l +++g +r ++l + +++ + l + l+++    + +++ + ++Gf+lg +fp++++ a +++p e     +g++ ++gs+g+a++p
  CDO70549.1 330 LWLNKKIGEWRVIFLYVMICIGLELVVWLIPNL---ISGAVCISFVGFFLGPIFPIVMNHAGNVLPSELISGSIGWIASFGSAGAAVFP 415
                 *********777777777777777777777777...888888999*****************************************998 PP

>> Importin_rep_2  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.074   6.7e+02       6      16 ..      96     106 ..      94     109 .. 0.82
   2 ?    8.1   0.0   0.00027       2.4       1      11 [.     175     185 ..     175     187 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.074
  Importin_rep_2   6 aliqiLGlLls 16 
                      +i  LG+L  
      CDO70549.1  96 FIINCLGFLTG 106
                     5999*****75 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00027
  Importin_rep_2   1 pSqklaliqiL 11 
                     +S+k+ ++++L
      CDO70549.1 175 TSNKMGIMHAL 185
                     8*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2908.66
//
Query:       CDO70550.1  [L=838]
Description: hypothetical protein BN946_scf184579.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-45  153.6   0.6    1.2e-44  152.9   0.6    1.3  1  ELYS      Nuclear pore complex assembly


Domain annotation for each model (and alignments):
>> ELYS  Nuclear pore complex assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.6   6.7e-49   1.2e-44       2     219 ..      46     257 ..      45     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 6.7e-49
        ELYS   2 LFiDrllsalaiqkdsgeaaklYPPkslqalrdlllqigsssevdllaKqslllYlLlDldasseeselaedFaaafglprklvllvqglwlLDhg.ef 99 
                 LF+D lls+ +i++    a++l+PP++ ++l +ll+++ + s++d+l++++l++YlL+++++      + e+F ++ ++p+++  l +++w+LD+g ++
  CDO70550.1  46 LFFDILLSSGGIRH----ANSLFPPTNPESLGKLLDAVKE-SSYDTLKQDCLVYYLLKWHQD-----GREEEFREKRCIPPQFAALADAYWHLDSGiNV 134
                 9*******755999....99****************9999.78****************866.....5679*************************888 PP

        ELYS 100 eealelLtdPslspkefadkilqvLler.gdaslalaylravkpplssseavealfvllargsvteAfsfqRslsdk.ekreelleelvelclee..aa 194
                  +a++lL+d +l++ e+++ki+q+L+   ++ +l+ +y+r+++p l+++++++a++ +la++s++eA+++qRs+s+  ++r++l+++++++ l++  + 
  CDO70550.1 135 ARAVSLLSDARLNR-EYPSKIIQALSLAeDANALIRTYIRTANPLLTEPDDIDAYTIALAESSLMEAWMYQRSFSEVsDTRKRLVRKILDWSLSPkpRL 232
                 ************98.**********998677888899***********************************9996656999************96544 PP

        ELYS 195 rklkeLlelpldeeEekllekfLls 219
                   lk Ll +p+++ E++l++++ l+
  CDO70550.1 233 VPLKHLLAFPFSQFEQSLIHAYALD 257
                 556******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 5221.79
//
Query:       CDO70551.1  [L=467]
Description: hypothetical protein BN946_scf184579.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   13.8   0.1       0.13   12.7   0.1    1.5  1  HMG_box   HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.2e-06      0.13       5      59 ..      15      74 ..      12      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.2e-06
                --HHHHHHHHHHHHHHHHSTTS-.....HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH CS
     HMG_box  5 lsafflfskeqraklkaenPelk.....naeiskklgekWkalseeeKkkYeekaekeka 59
                +s f++f+++  +klk  +   +      +++sk +g  W+   +e K ++++ +++++a
  CDO70551.1 15 PSDFLFFRSAANEKLKVLCELFHvkpmmQKDVSKVAGMLWRGAAQETKDEFKKYSNEQRA 74
                688999999999999887766553333358**********************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3259.47
//
Query:       CDO70552.1  [L=489]
Description: hypothetical protein BN946_scf184579.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-48  163.2   0.0    1.6e-38  132.6   0.0    2.5  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   9.2e-43   1.6e-38      29     339 ..      14     353 ..       5     361 .. 0.89
   2 !   27.6   0.0   6.5e-11   1.2e-06     354     392 ..     402     441 ..     384     451 .. 0.88

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 9.2e-43
                 HHHHH-SEEEEE.ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHH CS
        p450  29 lqkkygpifrlk.lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedl 125
                 l+++yg +++++ + + +  +l++p a +++l+k++++f+ + d++  ++  k   g+g++ + ge++kk+Rr+l+p +    +l ++ ++++ +a+++
  CDO70552.1  14 LFERYGGVVKVYgVLGVEQLFLHDPLALQHILVKDQDAFEET-DMFIETN--KLLFGEGLIATLGEQHKKQRRMLNPVFSLA-NLrRVLPRIQPIANEV 108
                 7899*999999846789******************9888886.6666665..899***************************.8889************ PP

                 HHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH.............HHHCHHHHCCCCCHHHTCCSCHHHHH CS
        p450 126 veklrkkagess...elditellskaaldvigsilFgarfdlledeklselvkaveelss.............llskssvqllllfpllkylptkllrk 208
                 ve+lr++  + +   e+d+ +++ ka+++ +++ + g+++d+le  ++se+ +a+  +s+             ++  ++  l+l  +l+++lp + lr+
  CDO70552.1 109 VERLRDTLPKDGgprEIDLLPWIKKATIEYVARGIIGVSLDSLEPTEASEYTNAICSVSQvamrvvfirplipWV-VRNISLYLRNKLVDWLPLPALRE 206
                 ******999999999********************************9999999988888555553333322233.345567777789*********** PP

                 HHHHHHHHHHHHHHHHHHHHHCHCHC...SCSSCSHHHHHHHHCTTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH CS
        p450 209 lkeavkklkdlldklieerretldsa...kksrrdfldalllakkekkge.sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEi 303
                 l+   +++++  ++    ++++++++   ++s  d+++++l a  +++ e s+l+++el  ++ ++ +aG++T++stl   L+ La+ +++q++lr E+
  CDO70552.1 207 LRCLSEVMEKSSREAYLAKKAEVNQSggsDRSYGDLMSIMLRAN-ASSLEkSQLTETELIGQINTFVLAGQETSTSTLGRLLHVLAREQDAQKRLRSEV 304
                 **999999999999999999999999888778889999999997.55555689********************************************** PP

                 HHHCCTTT.............T-HHHHCCT-HHHHHHHHHHHHHSCSST CS
        p450 304 devlgdkr.............eptyddlqklpyldavikEtLRlhpvvp 339
                 + +  ++              ++ yd l+ lpyldav++EtLRlhp++ 
  CDO70552.1 305 RDAKTRHAlacgmeasewesvSLPYDILTGLPYLDAVVRETLRLHPPTS 353
                 ****99889**************************************98 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 6.5e-11
                 TEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TT CS
        p450 354 gylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldek 392
                  + +pkGt+v++++ + +rd+ v+ ++++e +peR+l ++
  CDO70552.1 402 TVYVPKGTNVMISILGANRDKHVWgQDADEWRPERWLTAS 441
                 5789*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3338.75
//
Query:       CDO70553.1  [L=323]
Description: hypothetical protein BN946_scf184579.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-17   62.6   0.1    5.2e-17   61.1   0.0    1.8  2  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    9.5e-17   60.7   0.4    2.9e-16   59.2   0.0    1.9  2  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   5.8e-21   5.2e-17       3      57 ..     222     276 ..     220     280 .. 0.96
   2 ?   -2.2   0.0      0.32   2.9e+03      12      25 ..     283     296 ..     282     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 5.8e-21
                     EETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHH CS
  Ribosomal_S5_C   3 kfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfe 57 
                     kfg+++++l+p+p G+G+  ++++++v+++aGikD +ak+ gsrn ++v+kA++ 
      CDO70553.1 222 KFGSTRIILRPRPVGFGLATNPVIHEVFKVAGIKDASAKVWGSRNSYHVMKAVVR 276
                     9***************************************************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.32
                     EE--TT--EES-HH CS
  Ribosomal_S5_C  12 kpaprGtGiiagga 25 
                     +pa+ G Gi ++g+
      CDO70553.1 283 MPAQMGNGIGSHGR 296
                     69*******98876 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   3.2e-20   2.9e-16       8      65 .]     151     208 ..     150     208 .. 0.97
   2 ?   -2.4   0.1      0.55   4.9e+03      30      47 ..     288     305 ..     287     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 3.2e-20
                   EEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE-- CS
  Ribosomal_S5   8 ikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpvp 65 
                   i+ v ++t +G++ ++s+l+vvG++nGl+GlG+gk+++   A++kA  +A++n+ +v+
    CDO70553.1 151 IRWVKQQTGKGKIERISVLIVVGNRNGLLGLGEGKGSDLMSALDKALPQAVRNMDYVE 208
                   7899***************************************************996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.55
                   EETTTEEEEEEEEESSHH CS
  Ribosomal_S5  30 GdgnGlvGlGvgkakeva 47 
                   G+g G  G  + k++e++
    CDO70553.1 288 GNGIGSHGRTMEKGREMR 305
                   888898888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2310.54
//
Query:       CDO70554.1  [L=147]
Description: hypothetical protein BN946_scf184579.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-16   60.5   0.0    2.7e-16   60.1   0.0    1.1  1  PITH      PITH domain


Domain annotation for each model (and alignments):
>> PITH  PITH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.5e-20   2.7e-16      70     152 .]      26     107 ..      13     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.5e-20
        PITH  70 eeeesaPktiklfkNrkkkldFddas..eptqeie.lseedeeketvelplrfvkfqnvssLtlffednnegedvtridyiglkGe 152
                 + +es+P+++++++Nr +++dF +a+  +p+ +i  l+    e+ + +++lr++ f nv+s++lff+d   g+d+ r++yig++G+
  CDO70554.1  26 TRGESTPRRLRIYANRANIVDFAEAEeiTPQLDIRlLE---GETAVHDYQLRAASFANVHSVSLFFSD-AVGGDTLRLYYIGFRGD 107
                 356899*******************5244666777333...234466********************9.667899*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1007.10
//
Query:       CDO70555.1  [L=632]
Description: hypothetical protein BN946_scf184579.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-47  161.7   0.0      3e-47  161.2   0.0    1.2  1  Pkinase          Protein kinase domain
      1e-28  100.4   0.0    1.4e-28   99.9   0.0    1.2  1  Pkinase_Tyr      Protein tyrosine kinase
    3.5e-05   23.3   0.0     0.0033   16.8   0.0    2.2  2  Kinase-like      Kinase-like
    0.00036   19.6   1.8    0.00053   19.1   0.1    1.8  2  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
  ------ inclusion threshold ------
      0.018   15.0   0.1      0.082   12.8   0.0    1.9  2  APH              Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   8.4e-51     3e-47       3     258 ..      27     285 ..      25     289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 8.4e-51
                 EEEEEEEESSEEEEEEEET..TTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS. CS
     Pkinase   3 kleklGeGsfGkVykavek..etgkivAvKkikkekakkkke..kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle.rkgs. 94 
                  +e lG G++G Vy+a+++  +++  +AvK++ ++++++  +  +  +rEi++++  + hpn+v+l +v+e+ ++ y+v++y++ g+l++ +  +++  
  CDO70555.1  27 LVEILGYGGYGIVYRAIDTysSNSTSYAVKCLPHSNKRSAARqrQLHMREIALHQLASgHPNVVTLHRVVEDYQYTYIVMDYCSDGDLFTQILhQRRYl 125
                 5789************9862267789********99999887668889********999****************************876555355552 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.....TTSCBSHH.HHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvl.....keneyskk.vDvWslGvi 186
                  +++ +k+++ q+l ++ey+Hs +i HrDlKpeN+L+ + g  l itDFGla+  + s  ++ ++g+ + ++PE        +++ys+   DvWslG+i
  CDO70555.1 126 GNNALIKEVFLQLLDAVEYCHSLNIYHRDLKPENVLCFDGGLrLAITDFGLATTDRMS--TEFRTGSVYHMSPECQggifaPTRSYSPLfNDVWSLGII 222
                 5667899******************************94444699*******987775..58889*********98666765588866526******** PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 l++l+tg++p+++ + ++ +         ++  l++    lp+   isee+  ll++ l++d ++R+t +e+
  CDO70555.1 223 LLNLITGRNPWKSASADDCT---------FQAYLKDPLHFLPTVLPISEEVNLLLTRTLEVDWRHRITLREM 285
                 ************44444422.........233444445567888889*********************9987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   3.8e-32   1.4e-28       1     259 []      25     289 ..      25     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 3.8e-32
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrk 94 
                  l+l + lG G +G V+++  +   ++++++ avK+l ++++++    ++  ++e+++ +    hpn+v l+ v+ + + ++iv++y++ GdL + + +
   CDO70555.1  25 LKLVEILGYGGYGIVYRAIDT--YSSNSTSYAVKCLPHSNKRSAarqRQLHMREIALHQLAsGHPNVVTLHRVVEDYQYTYIVMDYCSDGDLFTQILH 120
                  678899************988..8889999******554443332216677889988887789*****************************887777 PP

                  TCTTTSBHHHHH.HHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.....EE.H CS
  Pkinase_Tyr  95 kekekltlkdll.sfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.....ft.s 184
                  + ++ l  + l+ ++ lq+ +++ey +s ++ Hrdl   NvL  ++     i+DfGLa +        ++e ++ +v  m+pE+          ++  
   CDO70555.1 121 Q-RRYLGNNALIkEVFLQLLDAVEYCHSLNIYHRDLKPENVLCFDGGlRLAITDFGLATTD-----RMSTEFRTGSVYHMSPECQGGIFaptrsYSpL 212
                  6.677777777626899*************************9875549*********987.....445566677899*****965544232333313 PP

                  HHHHHHHHHHHHHHHTTSSGTTTTSHHHH..HHHHHHTTEE.S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespypglknee..vleklkegkr.lekpekcpeelyelmkkcweedpeeRptfselvekl 259
                    DvWs G++l  ++t g++p+++ ++ +  + ++lk+  + l++   ++ee++ l+++ +e d ++R t++e+++ l
   CDO70555.1 213 FNDVWSLGIILLNLIT-GRNPWKSASADDctFQAYLKDPLHfLPTVLPISEEVNLLLTRTLEVDWRHRITLREMRRAL 289
                  46**************.******996666215556655544488888999**********************998765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0056        20      14      73 ..      25      86 ..      21      99 .. 0.80
   2 !   16.8   0.0   9.3e-07    0.0033     149     288 .]     135     279 ..      99     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0056
  Kinase-like 14 lvrgellkkgdrsvvfevkdqetgeplavkvfllps..easkkdlerlkeqelairllrgkn 73
                 l+ +e+l+ g+ ++v+++ d +  ++    v  lp   + s     +l+  e+a+++l    
   CDO70555.1 25 LKLVEILGYGGYGIVYRAIDTYSSNSTSYAVKCLPHsnKRSAARQRQLHMREIALHQLASGH 86
                 7899******************9988766666665522777777889999999999987654 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 9.3e-07
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnl.lldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                    lql+  + + +++ + h +++++n+ ++d   +l +++f+   ++  +    +  + +  pE  g    + +  +  +    d+W lG+  + +  
   CDO70555.1 135 F-LQLLDAVEYCHSLNIYHRDLKPENVlCFDGGLRLAITDFGLATTDRMSTEFRTGSVYHMSPECQGG--IFAP-TRSYSPLFNDVWSLGIILLNLIT 228
                  3.79999******************963799999********9999999999888889999***9887..6888.556666777************** PP

  Kinase-like 246 lklPltlateeakeew........kfklck.kipekvkaLlkkfLqlsqedR 288
                     P   a  +    +        +f + + +i+e+v++Ll + L+++ ++R
   CDO70555.1 229 GRNPWKSASAD-DCTFqaylkdplHFLPTVlPISEEVNLLLTRTLEVDWRHR 279
                  ****9765443.2333345999996666555**************9998877 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.17     6e+02      91     103 ..      33      46 ..      30      54 .. 0.83
   2 !   19.1   0.1   1.5e-07   0.00053     253     322 ..     107     172 ..      92     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.17
  Pox_ser-thr_kin  91 tGGYGivfri.eky 103
                       GGYGiv+r  + y
       CDO70555.1  33 YGGYGIVYRAiDTY 46 
                      59******966988 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.5e-07
  Pox_ser-thr_kin 253 arcsadkvkeeiaaelGfaslveyikfifLqiaLLyikiyelpdcenflhvDlkPdniLifdskekliik 322
                        cs  ++ ++i ++  +  ++  ik +fLq  LL   + e     n  h DlkP+n+L fd   +l i+
       CDO70555.1 107 DYCSDGDLFTQILHQRRYLGNNALIKEVFLQ--LLD-AV-EYCHSLNIYHRDLKPENVLCFDGGLRLAIT 172
                      46899999999999999*************6..333.33.66667899**************98888775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1     4e+03      22      77 ..      52     109 ..      46     128 .. 0.49
   2 ?   12.8   0.0   2.3e-05     0.082     168     202 ..     150     183 ..     133     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                 -EEEEEE-TTS-HHHHHHHHH.......HHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE-- CS
         APH  22 ryvlrrnpparaaeeirreva.......llrlLakagvpvPevlagdtddeeigllfalieyv 77 
                 +y+++  p++ ++++++r+ +       l +l +++ + v  ++      e++ + + ++ y+
  CDO70555.1  52 SYAVKCLPHS-NKRSAARQRQlhmreiaLHQLASGH-PNVVTLH---RVVEDYQYTYIVMDYC 109
                 6666666666.4444443333212222033333333.3333333...3455555555555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.3e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                 + H+Dl+p N+l  +++ r+ ++ Df++a++  + 
  CDO70555.1 150 IYHRDLKPENVLCFDGGLRL-AITDFGLATTDRMS 183
                 56************999999.********997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4403.70
//
Query:       CDO70556.1  [L=395]
Description: hypothetical protein BN946_scf184579.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-39  134.4   0.3    1.4e-38  133.1   0.3    1.7  1  Asp       Eukaryotic aspartyl protease
      2e-05   24.9   0.6    0.00025   21.3   0.6    2.3  1  TAXi_N    Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
       0.15   11.8   0.1          3    7.6   0.0    2.7  3  TAXi_C    Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.3   2.4e-42   1.4e-38       2     314 ..      70     392 ..      69     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 2.4e-42
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEE..........EEEEEEETTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..........xxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdg.svsGfl..........sqdtvkvggltvknqe 89 
                 + g+is+Gtp+q+ +v fDTGS  l   s +c+    c + +++dp +S ty +  +  ++ +++g  v+ ++          ++dtv+vgg+  kn+ 
  CDO70556.1  70 WWGNISVGTPPQTVSVAFDTGSQTLEFASIECT---SCMQLNKFDPFESRTYVRGDNVTTLDFATGvGVDPVVnndyvltvrnGTDTVTVGGVAAKNIP 165
                 679*****************************9...6***************9999999999999988776542222222222689************9 PP

                 EEEEEEESSHHHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  90 fgeatkepgstflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvtskgywqielesvtv 188
                 +    k++   f  ++f Gi G+g       +a+ +f  ++  gl    +fs yl  + +   e++ Gg+D++k+kG+l+  + t +g wqi   +++v
  CDO70556.1 166 LFTILKQSP-KFDIVPFLGIQGMGS------QAEGFFAAVTRVGL--PSLFSTYLTPHTAGKAELLIGGIDDTKFKGKLIFADQTGDGDWQIPSIQISV 255
                 999988887.488889********3......44556777666666..679******999**************************************** PP

                 TTEEE.EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET...TCEEEEETTG...GGGSEEEEEEE.TTE..EEEEEGGGGEEEESSSTTSEEE CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx...xxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxxx RF
         Asp 189 ggktv.lcssgcqailDtGTsllalptsivekiakaigakkses...egeyvvdCds...lsslpdisfti.gga..kitvpvselvlkeeeseesqCi 277
                 +g+t+ +  ++ ++i D+GTs + ++t++ e++   i+ + +      g y + C++   ls + di+ft  +g+  ++t+p sel + + +s+ s+C 
  CDO70556.1 256 NGRTTtVLRQSRSVICDSGTSNVLFDTQTTEAMYALISPNIKPFaaePGAYGLPCSEidgLSATIDITFTSqSGRpfNMTIPSSELNVGPFSSDPSTCQ 354
                 **99988999999*******************999988876543333699******944445666777776645511567999**************** PP

                 ESE.EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 278 lgl.vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 + +  ++    l ++G   l+++y+v+d++n+r+g+A+
  CDO70556.1 355 TLInAFDGFDGLALVGGSLLKHYYSVWDVGNQRMGFAP 392
                 ***7777778899***********************96 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   4.2e-08   0.00025       4      57 ..      73     124 ..      71     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.2e-08
      TAXi_N   4 sisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcs 57 
                 +is+Gtppq++++++DtGs+ + +    c++c   + + fdp +s+ty +    
  CDO70556.1  73 NISVGTPPQTVSVAFDTGSQTLEFASIECTSCM--QLNKFDPFESRTYVRGDNV 124
                 699****************99988776666555..4566999999999775554 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.26   1.6e+03     145     160 ..      82      97 ..      76      98 .. 0.87
   2 ?   -0.5   0.0      0.16   9.5e+02       8      40 ..     252     285 ..     245     291 .. 0.72
   3 ?    7.6   0.0    0.0005         3      94     160 ..     319     391 ..     307     392 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.26
                 TS-EEEETTTTEEEEE CS
      TAXi_C 145 dnllvFDleksrlgFs 160
                  + + FD+ +++l F+
  CDO70556.1  82 TVSVAFDTGSQTLEFA 97 
                 56799*********98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
                 EEEETTEEE-.------EE-S----SEEE-SSSS CS
      TAXi_C   8 gisvngkrlp.lpasaldldktgsggtvlstgtp 40 
                 +isvng++   l++s   + ++g+ +++ +t t+
  CDO70556.1 252 QISVNGRTTTvLRQSRSVICDSGTSNVLFDTQTT 285
                 6899988885255555545888999999998876 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0005
                 -EEEEESS..S-..EEEE-GGGGEE..E-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  94 titlvleg..ga..ewtisgenllv..kveggvvClafvesgvagesavviGglqlednllvFDleksrlgFs 160
                 ti++ + +  g+  ++ti++++l v  + ++  +C ++++  +  ++ + +Gg  l++++ v+D+ ++r+gF+
  CDO70556.1 319 TIDITFTSqsGRpfNMTIPSSELNVgpFSSDPSTCQTLINAFDGFDGLALVGGSLLKHYYSVWDVGNQRMGFA 391
                 5555665544445666666665555113446689999999988889999***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2762.93
//
Query:       CDO70557.1  [L=308]
Description: hypothetical protein BN946_scf184579.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-64  215.5   0.0    8.7e-64  215.2   0.0    1.0  1  ATP-synt_10  ATP10 protein


Domain annotation for each model (and alignments):
>> ATP-synt_10  ATP10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0   4.8e-68   8.7e-64       6     257 .]      50     285 ..      45     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 4.8e-68
  ATP-synt_10   6 askpkeekvkeltrpiGldkppsknentskkyslgnslkdlfdeektekrrkeLeeelkksyfydlkefrktnGKlFlspksyfkadkalyfPnlvGk 103
                  +++ k+ ++  l+rp+G+++ p++    + ++++++ ++ ++d+ek+ ++r++L++e  ++yf dl+  r+++GK++++pk ++++dkalyfP+++G+
   CDO70557.1  50 KEEAKKDELPLLQRPLGVRERPKP----KGEKNWEETREKYLDQEKRLEERHHLAREATRGYFSDLSATRHHGGKTWIAPKVMIRQDKALYFPDISGT 143
                  55667888999*************....78999***************************************************************** PP

  ATP-synt_10 104 tLasskeqsledvlkgkvsvVrlfssvvgeelvksyfknkeegkdylkdyeelkeenkdlQivdinlienwlKallvklslaslrkklpkerhnkyfi 201
                   L ++++++++++l gkvsvV l++++++e +++ +++           +++   +++ +Q v+inl++n +K++lv+l+ + +rk++p++ + +y+i
   CDO70557.1 144 PLVGKEKVHTSNLLAGKVSVVTLLTTRISEIQTAMFIEP----------TQNAFGSHPLFQRVQINLQDNMIKSFLVSLFASGIRKTVPERLWPTYLI 231
                  **************************************3..........46789999***************************************** PP

  ATP-synt_10 202 vsrkqlpfeireelkinNlytGYvylvDqnlkIRWagsGnateeelellwkcvkgL 257
                   s+k  ++ +re l+i N  +GYvylvD+++kIRWa+++ +++ee+ +l+ c++ L
   CDO70557.1 232 SSQK--MEYLREPLGIANRHVGYVYLVDPKMKIRWAACADPKSEEIAALVTCTRVL 285
                  *444..689*******************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2196.44
//
Query:       CDO70558.1  [L=614]
Description: hypothetical protein BN946_scf184579.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4161.05
//
Query:       CDO70559.1  [L=290]
Description: hypothetical protein BN946_scf184579.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   87.3  17.5    1.3e-24   87.1  17.5    1.1  1  TPT       Triose-phosphate Transporter family
     0.0024   18.0  34.2      0.019   15.2   9.9    2.2  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1  17.5   1.5e-28   1.3e-24       7     289 ..       3     284 ..       1     285 [. 0.91

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.5e-28
         TPT   7 fllWYllnvvfnilnKkilnvf..pyPltvsavqllvgsvlilvlwal.glkk...rpkisse.flkailplalvktlghvlavvslskvaVSfthtvK 98 
                 + +W +l++++ i+n +++n++   yP+++ + +l+   + + vl ++ +l++     ++s++ fl++ilp++l+   + +l++ +    +V + +++K
  CDO70559.1   3 IPIWIVLSSAVIIYNNYLYNTLqfRYPVFLVTWHLTFAAIGTRVLQRTtHLVDgarDVNMSKDmFLRSILPIGLLFSGSLILSNTAYLYLSVAYIQMLK 101
                 568*****************97669**********99999888877765444432255566669*********************************** PP

         TPT  99 asePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvall 197
                 a  P+   ++s  +  +++s  + + +  i  Gvalas  El Fn+igf++  ++  ++++r ++   ll++lk +d l  +++ + + +l+ l v+ +
  CDO70559.1 102 AFTPVAILLISWTFRIQEPSKRLAVIVFMISCGVALASHGELRFNIIGFLTQAAAVAFEASRLVMIQILLHGLK-MDPLVSLHYYAPVCALINLAVLPF 199
                 ************************************************************************76.898888888889999999999999 PP

         TPT 198 vegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 +eg+  + ++l+ +        l ll ++++ +l n+ a  ++   s +  ++a + K ++ I+ svl+f+ ++++l+++G +va+vG +lY
  CDO70559.1 200 TEGLAPFYEVLRIG-------PLILLSNALVAFLLNIAAVFLVGAGSGLVLTLAGVFKDILLITGSVLIFGAQITPLQVLGYSVALVGLVLY 284
                 9**88888888888.......4678999**************************************************************** PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   9.9   2.1e-06     0.019      25     135 ..      24     138 ..       2     140 .. 0.77
   2 !    9.0  16.3   0.00017       1.5       3     134 ..     149     283 ..     147     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-06
        EamA  25 lrkvspltltfvrfliagilllii....allkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltl 119
                 l++  p++l+++ +++a+i   ++    +l+ + ++ ++s+  +l  +l   l +    +l ++a  ++s++ + ++ +++Pv +l++s+ +  + +++
  CDO70559.1  24 LQFRYPVFLVTWHLTFAAIGTRVLqrttHLVDGARDVNMSKDMFLRSILPIGLLFSGSLILSNTAYLYLSVAYIQMLKAFTPVAILLISWTFRIQEPSK 122
                 455589**************97777776777777774555555444444444666666789************************************** PP

        EamA 120 kqllgivlillGvlli 135
                 +  + +++i +Gv+l 
  CDO70559.1 123 RLAVIVFMISCGVALA 138
                 *************996 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00017
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfl..iagillliiallkegklaklslkdwllllllgllgtvlafllffy.alkktsasnaslit 98 
                 g l+  +a+ f a+  v+++ill+ +    l+ + +   +++++ l++++++eg     +  ++l +  l ll+++l+ +l+++ a+  ++a+   ++t
  CDO70559.1 149 GFLTQAAAVAFEASRLVMIQILLHGLKMDPLVSLHYYapVCALINLAVLPFTEGLA---PFYEVLRIGPLILLSNALVAFLLNIaAVFLVGAGSGLVLT 244
                 66777889999***********998866666666666559**************99...9999999999999998887755555055566666555555 PP

        EamA  99 sleP...vftlilsvlllgekltlkqllgivlillGvll 134
                 +  +   ++ +  svl++g ++t +q+lg  ++l+G++l
  CDO70559.1 245 LAGVfkdILLITGSVLIFGAQITPLQVLGYSVALVGLVL 283
                 54442225667779***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2057.60
//
Query:       CDO70560.1  [L=105]
Description: hypothetical protein BN946_scf184579.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 721.42
//
Query:       CDO70561.1  [L=137]
Description: hypothetical protein BN946_scf184579.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1003.52
//
Query:       CDO70562.1  [L=83]
Description: hypothetical protein BN946_scf184579.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-10   39.5   0.1    4.6e-10   39.1   0.1    1.1  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   2.6e-14   4.6e-10      21      66 ..      10      58 ..       8      59 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2.6e-14
                EEEEEEEEETTSEEEEEEEEEEETTET...EEEEEEEEEEEGGGEEEEE CS
         LSM 21 lrGtLkgfDqfmNlvLedveetlkdkk...ekrklglvliRGnnivlis 66
                l G+++g+Dq  N+vL+d +e++ + +   e+  lgl+l++G++ivli+
  CDO70562.1 10 LQGVMEGYDQKSNVVLSDSKERVYSMDegvEEIPLGLYLVKGDQIVLIG 58
                89*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 605.49
//
Query:       CDO70563.1  [L=457]
Description: Glycoside Hydrolase Family 28 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-48  165.2  13.7    2.7e-48  164.7  13.7    1.1  1  Glyco_hydro_28  Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7  13.7   1.5e-52   2.7e-48      29     322 ..     116     445 ..      95     448 .. 0.76

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 1.5e-52
  Glyco_hydro_28  29 sgttvtlegtttak............vkekngkddivisgekitvlgisGkgtidGqGqawwdgkgkkk........kegkkkpkflvikkvkns 103
                     ++++++l+gt++++                 +++     + + ++++++G+gtidG+Gq+wwd   +++        +     p  l++ + +n 
      CDO70563.1 116 DNVEIELSGTVQYTpdiakwspqslyL-V--YQNATTYWFLSGNNIHMYGGGTIDGNGQVWWDTLNNTHnagtaggsSTTFARPIPLTVGNATNV 207
                     566777777777666655555554421.1..11122223344467788999***********975544424543343344457888999999999 PP

  Glyco_hydro_28 104 kiknlniknspvfhfs...vesgkdltisditidasagdhNtDgidvgsskgvtisntnikngDDciainsgsknisitnvtcggGHGlSiGSvg 195
                      i+n++ + sp+   +   v +      +  +   s+ + N+Dg d+ +s++vt+ ++++ n DDc++ ++ s ni + n+ c+g HG+S+GS+g
      CDO70563.1 208 VIENIHEISSPFWNNVsqtVRHRGSYSRDGSMSYSSSPTANSDGWDIYRSDHVTVRDSIVINDDDCVSFKPNSTNILVANMWCNGSHGISVGSLG 302
                     999999888886543300033333333444444455555******************************************************** PP

  Glyco_hydro_28 196 grsd..ntVknvtvkdskvknsenGvRIKtik..........gatgtvsnvkyeniklknvaypividqdYen.keptgkptsgvkisdvtfknv 277
                     ++    + V+nv v++ ++ n++nG RIK             g +g+v nv++++  +knv +pi+i+q Y    + + + +s+++isdv + nv
      CDO70563.1 303 QYAGetDIVENVYVSNITMLNAQNGARIKVFGgnpspnstvgGGSGHVRNVTFKDFYVKNVDNPILINQCYSTaADVCAQYPSNLSISDVHYINV 397
                     *9765588*********************6544444455555899**************************9967788888************** PP

  Glyco_hydro_28 278 tgtvks.aeavkllcekgskcsdvtmsdvkitg..gkstskcknvksk 322
                      gt+++ + +v+++ e   +c+d+t +  +i+   g  t  ckn+ s+
      CDO70563.1 398 HGTSSGaEGTVVVDLECSDQCEDITAKRTNISPpnGTATYICKNIVST 445
                     ****9965566665555558***********9876899******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3220.64
//
Query:       CDO70564.1  [L=285]
Description: hypothetical protein BN946_scf184579.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2105.36
//
Query:       CDO70565.1  [L=73]
Description: hypothetical protein BN946_scf184579.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 599.79
//
Query:       CDO70566.1  [L=277]
Description: hypothetical protein BN946_scf184579.g22, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-39  136.3   0.0    1.7e-31  109.4   0.0    2.0  2  RmlD_sub_bind  RmlD substrate binding domain
    9.2e-15   54.7   0.0    7.6e-07   28.8   0.0    2.1  2  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.021   14.0   0.2       0.24   10.5   0.0    2.4  2  NAD_binding_4  Male sterility protein
       0.04   14.0   0.0      0.067   13.3   0.0    1.4  1  DapB_N         Dihydrodipicolinate reductase, N-terminus
      0.044   13.2   0.9        2.3    7.5   0.0    2.5  2  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   6.8e-10   2.5e-06       1      56 [.       1      63 [.       1      65 [. 0.94
   2 !  109.4   0.0   4.7e-35   1.7e-31      77     266 ..      61     253 ..      60     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 6.8e-10
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.......T--TTSHHHHHHHHHHH--SEEE CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre.......eldltdaeavaellkeakpdvvv 56
                   m+++vtGa+G lG++++++ +++g++vl+l  +       +ldltda+a +++++e+kpd+ v
     CDO70566.1  1 MRVIVTGASGVLGTAVYAAYKSAGHDVLGLAYAhprdglkQLDLTDAAATEHVFSEFKPDLNV 63
                   89***************************97777999**********************9755 PP

  == domain 2  score: 109.4 bits;  conditional E-value: 4.7e-35
                    HHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH.H-SSEEEEEE-SEESSSSS-...HHHHHHHHH. CS
  RmlD_sub_bind  77 vnaeavealAeaaaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla.agkkalivRtswvygekgkn...fvktmlrla. 167
                    +n+  +e+lA++ +a + +L+++StDyVFdG+ + pY+++++t+Pln+YG+tK +GE avl  +g + +++R++++yg   kn    v+ +l+ + 
     CDO70566.1  61 LNVSVPENLAKLSKALKFKLVYISTDYVFDGT-SPPYTPSSPTNPLNLYGQTKRDGELAVLGvSGSQSIVLRVPVLYGPAPKNsdsAVNILLDVVt 155
                    6999****************************.668*************************97899************966653337888888886 PP

                    .HH-SEEEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-CCCS--.SS---SBE-B--H CS
  RmlD_sub_bind 168 .kereelkvvaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagadseevkpistaeypt.pAkRPanSvLdte 261
                     ++ ++ ++ +  ++ PT   d+A++l+ l++   + + +  ++H+++ +  +++e+  + ++ +g  +   + i+ ae p+   +RP++ +L t+
     CDO70566.1 156 dQSGKQYRMDHYATRYPTNILDIADFLVRLTSLPPS-RVIPPILHYSAGEPFTKYEMCLVFARILGLPH--THIIADAEPPKdGTPRPRDCQLYTH 248
                    677899************************998885.778*******************9999999965..555777777762689*******999 PP

                    HHHHC CS
  RmlD_sub_bind 262 kleat 266
                    ++e  
     CDO70566.1 249 ETEDL 253
                    98865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.1e-10   7.6e-07       1      67 [.       3      61 ..       3      64 .. 0.90
   2 !   25.0   0.0   3.2e-09   1.1e-05      91     180 ..      62     145 ..      60     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.1e-10
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpda 67
                ++VtGa+G +G+a+  a +++g++v+gl+    ++         l +ldltd++a+e +f+e++pd 
  CDO70566.1  3 VIVTGASGVLGTAVYAAYKSAGHDVLGLAYAHPRD--------GLKQLDLTDAAATEHVFSEFKPDL 61
                68***************************993322........466*******************96 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 3.2e-09
                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT..S-TT CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr..ngeg 180
                 n+ +  nl++ +++ +  +l+++s++ v+    + p +    ++p++p + Y+ +K+ ge  v  +    g + i+lr+  lyGp   n ++
  CDO70566.1  62 NVSVPENLAKLSKALKF-KLVYISTDYVFDGTSP-PYT---PSSPTNPLNLYGQTKRDGELAVLGVS---GSQSIVLRVPVLYGPApkNSDS 145
                 8889999******9999.************9988.655...555********************985...5668***********9433333 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3     0.093   3.4e+02       1      11 [.       5      15 ..       5      19 .. 0.88
   2 ?   10.5   0.0   6.6e-05      0.24     109     209 ..      60     139 ..      24     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.093
                   EE-TTSHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkv 11
                   +TGa+G LG+ 
     CDO70566.1  5 VTGASGVLGTA 15
                   7********86 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.6e-05
                    HHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE- CS
  NAD_binding_4 109 rvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvrearrrsglpvvivRps 204
                    + Nv   +++ +l+k+lk +  l+++ST yv +  +                    ++++ ++  n Y q+K  +E  v   +   g + +++R++
     CDO70566.1  60 DLNVSVPENLAKLSKALKFK--LVYISTDYVFDGTSPP-----------------YTPSSPTNPLNLYGQTKRDGELAVLGVS---GSQSIVLRVP 133
                    6799999********99888..******7777766633.................478999999999*********9999999...7788999999 PP

                    EEE-.- CS
  NAD_binding_4 205 iitg.e 209
                    +++g  
     CDO70566.1 134 VLYGpA 139
                    999852 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.067       1      53 [.       1      53 [.       1      85 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS-- CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgkl 53
                ++v+v+GasG +G++v  a ++a +  l+ a+ +++  l++ d+ +++ ++++
  CDO70566.1  1 MRVIVTGASGVLGTAVYAAYKSAGHDVLGLAYAHPRDGLKQLDLTDAAATEHV 53
                89********************9999999999999988888888766655544 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.01        37      54      77 ..      37      60 ..       4      64 .. 0.79
   2 ?    7.5   0.0   0.00064       2.3     119     164 ..      75     119 ..      64     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.01
                   EEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd 54 lklhkgDltDssslerllaevqpd 77
                     l + DltD+++ e++++e +pd
     CDO70566.1 37 DGLKQLDLTDAAATEHVFSEFKPD 60
                   457789999999999999999998 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00064
                    .TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 119 ekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwiv 164
                    + k++++ +St+ v+  + + p+t + p++P + Y+ +K   +  v
     CDO70566.1  75 ALKFKLVYISTDYVFDGT-SPPYTPSSPTNPLNLYGQTKRDGELAV 119
                    4489***********554.689*****************8777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2084.93
//
Query:       CDO70567.1  [L=671]
Description: hypothetical protein BN946_scf184579.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   51.1   0.0    3.1e-13   50.0   0.0    1.6  1  RTC4      RTC4-like domain
    0.00061   19.3   8.0      0.022   14.2   2.6    2.3  2  SDA1      SDA1


Domain annotation for each model (and alignments):
>> RTC4  RTC4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   3.4e-17   3.1e-13       4     116 ..     423     539 ..     420     543 .. 0.71

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.4e-17
        RTC4   4 keSvyrdeakeavkksgk....rklskeekrkldle....kftpGYYGlkgqriiseeilkkfkkelrkravkdklvsargvsdFvqaVLvPEvavrLi 94 
                 ++Sv++  ++ +++ + +    + l ++  ++ +le     + +GYYG++g+ ii +++  ++ +  + +a + +        +F++ VLvPE+a+rLi
  CDO70567.1 423 QNSVFWGVLQATFQPQLSldriAALYDQNPSHPRLErvysAARVGYYGEEGEAIIVSALEVMYPD-WHLAAFRLP---PFNSRSFLRLVLVPEAAIRLI 517
                 55666666666666655555553333333333333322215689******************943.333333333...248899*************** PP

        RTC4  95 meDmkvseeeAreileesaeyG 116
                 ++D +v++ eA++i+++sa+yG
  CDO70567.1 518 AQDQQVTNIEAYKIMSNSAAYG 539
                 *********************9 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3   0.00016       1.4      90     142 ..     141     226 ..       5     303 .. 0.68
   2 !   14.2   2.6   2.5e-06     0.022     165     218 ..     600     651 ..     567     671 .] 0.52

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00016
        SDA1  90 eeeedsddedd.eedwevesdddseedseggwidvesdee................................eieesdesedeeee 142
                 e+ e++d e d  + ++++sd+ds ++++ g  +v+++++                                +i+  ++s  ++++
  CDO70567.1 141 EQAEETDAEPDaAAMDDESSDSDSGSSEDSGSDNVDKKGKsaakpgpkkvlavtsrpstriqpivipgqaraDIQGRANSARDTSN 226
                 22222222222022222222233323333333455444444566666666666666666666666666665533333333344333 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.5e-06
        SDA1 165 eeeeeeeeeekekkkk........kakeaseeekkkekeeekiskaselattrILTpaDFak 218
                 e+  ++e+       +         ++ ++   + +++++ ++++++++++trILT+aDF k
  CDO70567.1 600 ETHAAQEK-------StgrpkrtlVRTYHT---RRASQNNPRAEEKTKVENTRILTDADFPK 651
                 11112222.......122333233222222...333333444444556************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4182.39
//
Query:       CDO70568.1  [L=628]
Description: hypothetical protein BN946_scf184579.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-15   55.5   0.0    2.3e-14   53.1   0.0    2.0  2  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.3e-18   2.3e-14      25     173 ..     257     401 ..     248     408 .. 0.87
   2 ?   -1.1   0.0     0.052   9.2e+02      83     115 ..     479     511 ..     471     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.3e-18
  Transposase_21  25 edprnvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfn 119
                     +d+r++ ++++ d +  f++  +  s  p+ll +ynlPP l ++ ++++   +i Gp++P k ++ +l P+ ++ ++l + Gv+tydalk+e f 
      CDO70568.1 257 SDARDIAFAICMDAYLLFQRKRAGPSATPILLQNYNLPPDLRIHLDHLFCLGIIGGPNQP-KRLHTFLIPFEEECVQLAH-GVSTYDALKRELFL 349
                     69*****************************************99987777799999999.67***************87.************** PP

  Transposase_21 120 lravllwtindfPalstlsGlstkgklacvtCkknteslrlkngkklcylghrr 173
                     l+a  + ++ d    ++l  l+++g++a v C++      l  gk   y+  r+
      CDO70568.1 350 LHAYCILCLGDII--AILKALNMRGVNAVVPCRTCLIRGLLIPGKTNYYVPLRH 401
                     ***********85..578889999999999999877777777666666666555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.052
  Transposase_21  83 sPgkdidvylePlvddlkelweeGvetydalke 115
                     +P   ++++ e  + +l++lw    +t+d   +
      CDO70568.1 479 CPWDWMHLFCENNIPNLVSLWMGRFKTLDDEGA 511
                     6777899***************99999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4224.63
//
Query:       CDO70569.1  [L=420]
Description: hypothetical protein BN946_scf184636.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2883.47
//
Query:       CDO70570.1  [L=155]
Description: hypothetical protein BN946_scf184636.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1037.40
//
Query:       CDO70571.1  [L=157]
Description: hypothetical protein BN946_scf184636.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-13   50.1   0.1    3.3e-13   49.8   0.1    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.1   1.8e-17   3.3e-13       4     124 ..      25     151 ..      22     156 .. 0.68

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.8e-17
                 EEEEEEEEETTSE....EEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEECS CS
       NUDIX   4 ravgvvllnekge....vLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygd.eheilyvfleeveg 94 
                 +a+ ++l+ e g+     ++++++++p      elP+G + +gEtpee+A+REleEEtG++a   ++    l   +p+++        ++++f e++e 
  CDO70571.1  25 VAILALLRSETGKfppsTIIIEQFRAPVERyvVELPAGLISEGETPEETAIRELEEETGFKArGVIQTSPLLV-CDPGMTNANMkLVTVDVLFPENLEM 122
                 4555556666677888878888884444445447**************************9944444444333.3333333332366666777777777 PP

                 GCSSTSTTTEEEEEEEEHHHHHHHHTHCTH CS
       NUDIX  95 elepndenevsevrwvpleellkeklaaes 124
                   +  d++e+ ++r v++++l  ++l++  
  CDO70571.1 123 PEQKLDPGEFIQARIVEIAKL-SAELKEYE 151
                 766669***************.55554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1221.69
//
Query:       CDO70572.1  [L=334]
Description: hypothetical protein BN946_scf184636.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-46  157.6   0.1      3e-46  157.0   0.1    1.3  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
    5.5e-42  143.5   0.0    7.5e-42  143.1   0.0    1.2  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    7.1e-05   21.9   0.0    0.00016   20.8   0.0    1.7  2  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0057   16.2   0.0       0.38   10.3   0.1    2.4  2  Glyco_hydro_4   Family 4 glycosyl hydrolase
  ------ inclusion threshold ------
      0.096   12.6   0.0       0.16   11.8   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
       0.37   10.1   3.6        2.5    7.4   0.2    3.2  3  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.1     1e-49     3e-46       2     141 .]       3     146 ..       2     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 1e-49
                 EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE..SSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHH CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse..keeealkdadvvvitagvprkpGetRddLlkvNakIv 98 
                 k +v+GaaGgiGq+l+lll++++   el L+Di+  +++Gva+dlshi+t+++v ++ +   + ++al++ad+v+i+agvprkpG+tRddL+k+Na+Iv
  CDO70572.1   3 KAVVLGAAGGIGQPLSLLLKTNPSITELSLYDIV--NTPGVAADLSHIDTPAKVAGYLPPddGLKKALTGADIVIIPAGVPRKPGMTRDDLFKINAGIV 99 
                 789*******************98999*******..9********************9876789*********************************** PP

                 HHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  99 keiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 +++++ ia+ ap+a+vlv+sNPv+    i++ev+kka+ +++k+++g
  CDO70572.1 100 RDLAKGIAEAAPKAFVLVISNPVNstvpIVAEVFKKAGVFDPKKIFG 146
                 *********************************************98 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.0   2.5e-45   7.5e-42       1     166 [.     148     328 ..     148     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 2.5e-45
                 THHHHHHHHHHHHHHHTS..-GGGEE--EEBSSSTETTEEHHHHHTTS..TTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHT CS
     Ldh_1_C   1 TtLDivRaktflaekagv..tprsvkvtViGgHsgvtiipllsqvkel..lklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallr 95 
                 TtLD+vRa+tf++e  g    + +v v+V+GgHsgvti+pllsq+ +   + +s+++l++l++r+q+ggdevvkak+GagsatlsmA+Aga+f+ +++ 
  CDO70572.1 148 TTLDVVRASTFVSEVLGDlsLAPKVTVPVVGGHSGVTIVPLLSQSSHPlpSGFSQENLDKLVNRIQFGGDEVVKAKDGAGSATLSMAYAGADFAYKIIC 246
                 9*************776545566789******************9975226899********************************************* PP

                 THTEEEEEEEEEESCCCECCS.............SEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCC CS
     Ldh_1_C  96 dtkeilsagvyldgevglkdq.............eieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekglef 166
                 + k++  +g++ + +v+l ++             ++eyfs Pv lg++Gv k+   +k+++ e + ++++v eL  +iekg++f
  CDO70572.1 247 AAKGE--KGIVAPTYVNLAADkeggdalkkeigrDLEYFSAPVELGTEGVAKINTLGKITAHEANLIKAAVPELATNIEKGVSF 328
                 *****..********9999999***********************************************************998 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.3e-08   0.00016       1      92 [.       5      95 ..       5     144 .. 0.89
   2 ?   -2.7   0.0      0.78   2.3e+03     204     230 ..     222     249 ..     206     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.3e-08
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrlee.lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvn 92
                vv+G+aG +G+ l   L+++++ + e+  +D+++ p +  +ls++++   + g +   d l++al g+d+vi  a++    g++++d + k+n
  CDO70572.1  5 VVLGAAGGIGQPLSL-LLKTNPsITELSLYDIVNTPGVAADLSHIDTPAKVAGYLPPDDGLKKALTGADIVIIPAGVPRKPGMTRDD-LFKIN 95
                89**********965.5666655******************************************************9999977766.77776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.78
   3Beta_HSD 204 fkigdeevlsdrvYvg.NvawahilAar 230
                  k g  +++ ++ Y+g   a+ +i+Aa+
  CDO70572.1 222 AKDGAGSATLSMAYAGaDFAYKIICAAK 249
                 5667788899999998568999999998 PP

>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0099        29      63      98 ..      60      95 ..      17     100 .. 0.68
   2 !   10.3   0.1   0.00013      0.38     123     157 ..      98     132 ..      93     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0099
                   EESSHHHHHTT-SEEEE---TTHHHHHHHHHHCCHT CS
  Glyco_hydro_4 63 attdrkealkdadfVitairvGlekareidekiplr 98
                     + +k+al+ ad+Vi+ + v  ++ +  d     +
     CDO70572.1 60 PDDGLKKALTGADIVIIPAGVPRKPGMTRDDLFKIN 95
                   556789***********9999888877777655555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                    HHHHHHHHHHHH-TTSEEEE-SSSHHHHHHHHHHH CS
  Glyco_hydro_4 123 vlleIakdieelcPdawvlnytNPaavvteallrl 157
                    ++ ++ak i e +P+a+vl  +NP+  +  ++  +
     CDO70572.1  98 IVRDLAKGIAEAAPKAFVLVISNPVNSTVPIVAEV 132
                    67899*******************98777666654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.5e-05      0.16       1     105 [.       8     126 ..       8     156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.5e-05
                     TTTSHHHHHHHHHHHHC-...T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC......HHHH.......HH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg...ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk......deeg.......ak 79 
                     GA G++G+ l   l  +    ++++  +v +p  +a+l++ +    v g +   + l++al+gad+V++ +g  +k      d          ++
      CDO70572.1   8 GAAGGIGQPLSLLLKTNPsitELSLYDIVNTPGVAADLSHIDTPAKVAGYLPPDDGLKKALTGADIVIIPAGVPRKpgmtrdD--LfkinagiVR 100
                     88888888888766666674444444468888888888766777788888888899*************99877776766430..2555666777 PP

                     HHHHHHHHCT--EEEEEEETTTTSGC CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdev 105
                      +++   ea  k fvlv +  v+  v
      CDO70572.1 101 DLAKGIAEAAPKAFVLVISNPVNSTV 126
                     77777778888888888777776555 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2   0.00085       2.5      38      90 ..       3      81 ..       2     110 .. 0.58
   2 ?   -0.3   0.1      0.19   5.8e+02     131     151 ..     171     191 ..     145     194 .. 0.74
   3 ?   -3.8   0.0       2.3   6.9e+03      82      98 ..     244     260 ..     241     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00085
                   EEEEE---TTTHHHHHHHHHCT...............T-EEEEE-TTS...........CCHHHHHCCSSEEEE-SS-T CS
  THF_DHG_CYH_C 38 kvvvvGrsnivgkplallLlek...............natVtvchskt...........kdlaeitreadivvvavGkp 90
                   k+vv+G+   +g+pl+llL+++               +    + h  t           + l++ +  adiv++ +G+p
     CDO70572.1  3 KAVVLGAAGGIGQPLSLLLKTNpsitelslydivntpGVAADLSHIDTpakvagylppdDGLKKALTGADIVIIPAGVP 81
                   6899999999999999999986444444444444444222233333332222222222245666666666666666654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.19
                    SEE--TTTSCHHHHHHHHHHH CS
  THF_DHG_CYH_C 131 saitPvpgGVGpmTvamllkn 151
                    ++  Pv gG + +T++ ll++
     CDO70572.1 171 KVTVPVVGGHSGVTIVPLLSQ 191
                    345699999999999999875 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.3
                    EEEE-SS-TT-B-GGGS CS
  THF_DHG_CYH_C  82 ivvvavGkpelikaemv 98 
                    i+++a G+++++   +v
     CDO70572.1 244 IICAAKGEKGIVAPTYV 260
                    89999999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2443.21
//
Query:       CDO70573.1  [L=620]
Description: hypothetical protein BN946_scf184636.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-43  147.5   0.0      1e-42  145.9   0.0    1.9  2  DEAD          DEAD/DEAH box helicase
    4.5e-27   94.6   0.1    4.1e-26   91.5   0.0    2.5  3  Helicase_C    Helicase conserved C-terminal domain
    3.8e-05   23.7   0.1     0.0004   20.4   0.0    2.3  2  ResIII        Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.011   15.1   5.1       0.37   10.1   0.0    2.6  2  CMS1          U3-containing 90S pre-ribosomal complex subunit
       0.13   12.4   1.5       0.29   11.3   0.0    2.3  2  Helicase_C_2  Helicase C-terminal domain
       0.16   12.2   0.0        0.5   10.7   0.0    1.9  2  SAM_DrpA      DNA processing protein A sterile alpha motif do
        7.2    6.9  16.0         13    6.0  16.0    1.4  1  PTPRCAP       Protein tyrosine phosphatase receptor type C-as
          8    5.6  12.5         12    5.0  12.5    1.2  1  VSG_B         Trypanosomal VSG domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   4.6e-46     1e-42       1     175 [.     208     388 ..     208     389 .. 0.92
   2 ?   -2.8   0.0       2.1   4.8e+03      21      33 ..     525     538 ..     504     548 .. 0.74

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 4.6e-46
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.......SEEEEEETTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyid.......lrvlliiggva 86 
                 t+iQ + ip + +g+d+++ a TGsGKTlaf++p++   +e+       + +gp  +i++P+reLa qt++n+  +++ +        l++ll+igg +
  CDO70573.1 208 TPIQLQGIPVAFSGRDMIGIAFTGSGKTLAFCLPLIMFALEEetrlpfVRGEGPVGVILCPSRELATQTYENILIWTDALAkegkypkLNTLLCIGGIS 306
                 89**********************************99888899999879999*******************9776664333445555*********** PP

                 HHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  87 ardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                  ++q  ++++g++ivv+tpgrl+d+l++++++++++++l +DEadr+ d gf++++++i++ +       k qrq++++SAT+p+++++
  CDO70573.1 307 MSEQSHVMNKGLHIVVATPGRLIDMLEKKRFTFDNCKYLCMDEADRMIDLGFEEDVRNIMSFF-------KRQRQTLLFSATMPRKIQD 388
                 ********999****************************************************.......67899*********99886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
                 ESTT.SSHHHHHHH CS
                 xxxx.xxxxxxxxx RF
        DEAD  21 aeTG.sGKTlafli 33 
                 ++TG sGKT+++  
  CDO70573.1 525 GRTGrSGKTGIATT 538
                 56776899998765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.99   2.2e+03      68      90 ..     278     315 ..     262     324 .. 0.58
   2 ?   -3.0   0.0         4   8.9e+03      11      26 ..     367     382 ..     359     395 .. 0.63
   3 !   91.5   0.0   1.8e-29   4.1e-26       2     111 .]     424     531 ..     422     531 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.99
                 S.EEEESGGGTS..............SSTSTTESEEEE CS
  Helicase_C  68 d.vLiatdvaer..............GidipkvnlVin 90 
                   +Li td++++              Gi + + ++V+n
  CDO70573.1 278 EnILIWTDALAKegkypklntllcigGISMSEQSHVMN 315
                 33666666665555555555555555555555555554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4
                 HHTTTTSEEEEEESSH CS
  Helicase_C  11 kleeeggkilifvnti 26 
                 ++ ++++++l+f+ t 
  CDO70573.1 367 SFFKRQRQTLLFSATM 382
                 3346777777777664 PP

  == domain 3  score: 91.5 bits;  conditional E-value: 1.8e-29
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k+ +lle+l  ++    ++if+++++++++  ++l   kg++++++hg+ +q+er+ ++++f++g  dv++a+ va++G+d++++++Vi+f++p+++++
  CDO70573.1 424 KMVYLLECL--QKTPPPVIIFSENKNEVDDiQEYL-LLKGVEAVAIHGSKTQEERQYAIKAFKSGAKDVMVASGVASKGLDFNDIQHVIIFSMPKEIED 519
                 555666665..89999************9976666.4678*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y+++iGRtgR g
  CDO70573.1 520 YVHQIGRTGRSG 531
                 **********76 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7      0.37   8.4e+02      96     122 ..      75     108 ..      38     174 .. 0.62
   2 !   20.4   0.0   1.8e-07    0.0004      32     170 ..     229     383 ..     219     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.37
                 -.........-SEEEEEHHHHHHTH......... CS
      ResIII  96 a..kekdstnkkilvttiqsldadseee.....e 122
                 +  +++++ + + l+ + q++ +++  e     +
  CDO70573.1  75 EerRREKARKERTLLQEAQEVLERKAAEdakktT 108
                 1444445566666666666665555444333221 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.8e-07
                 STTSTHHHHH..HHHHHHH-S............-EEEEESSHHHHHHHHHHGGGGTGG...............GEEEESSS-B--.......-SEEEEE CS
      ResIII  32 aTGtGKTlva..aklierllkkgkee.......kflflvprkslleqtleefkkflseayke...........igkkvsgdkkkakekdstnkkilvtt 110
                  TG+GKTl      ++ +l ++ +           ++l+p+++l  qt+e++  +++  +ke           ig++  +++ +     ++  +i+v+t
  CDO70573.1 229 FTGSGKTLAFclPLIMFALEEETRLPfvrgegpVGVILCPSRELATQTYENILIWTDALAKEgkypklntllcIGGISMSEQSHV---MNKGLHIVVAT 324
                 5******988523455555555444499999988899**************9777776666566566666666554444444444...6999******* PP

                 HHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII 111 iqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                   +l   +     e++++  d+ +++ +DEa r+ +    + +r+i+  fk+    l ++AT++
  CDO70573.1 325 PGRLIDML-----EKKRFTFDNCKYLCMDEADRMIDLgfeEDVRNIMSFFKRqRQTLLFSATMP 383
                 ********.....999999****************9866669999*****88455699****87 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   4.5     0.025        56       9      67 ..      61     125 ..      51     203 .. 0.64
   2 ?   10.1   0.0   0.00016      0.37     178     209 ..     318     349 ..     305     368 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.025
        CMS1   9 kaenkekgkkkksekkRskkkerkkgkl.ketqDvkag.....lteavalqdpelLadylaqklk 67 
                  +e++e+   + +e++R ++k rk++ l +e q+v         ++++a ++ e+ a+ la    
  CDO70573.1  61 LQEEQEERDDEEREEERRREKARKERTLlQEAQEVLERkaaedAKKTTAEKEEEQDAEILAAIAA 125
                 33333333344445555566666665551445554322223444444444445555555544433 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00016
        CMS1 178 igiavGtpgRildLleeeslsvdeLkrivlDa 209
                 + i v tpgR++d+le++ ++ d+ k++ +D 
  CDO70573.1 318 LHIVVATPGRLIDMLEKKRFTFDNCKYLCMDE 349
                 568899**********************9996 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.5       1.1   2.4e+03      21      54 ..      88     121 ..      48     133 .. 0.63
   2 ?   11.3   0.0   0.00013      0.29       2      94 ..     429     514 ..     428     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
  Helicase_C_2  21 lleevverlkeeleskkieifveekeesrekvle 54 
                   ll+e+ e+l+++  ++ ++   e++ee++ ++l+
    CDO70573.1  88 LLQEAQEVLERKAAEDAKKTTAEKEEEQDAEILA 121
                   3444444554444444444444444444444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00013
  Helicase_C_2   2 lellevvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfsddllraviivglP 94 
                   le+l+++p  v++f  + + ++++ e+l  ++  + + i  ++++e+r+  ++ +k+  + + +++a+  G  s G+df+   ++ vii+ +P
    CDO70573.1 429 LECLQKTPPPVIIFSENKNEVDDIQEYLLLKGV-EAVAIHGSKTQEERQYAIKAFKS--GAKDVMVAS--GVASKGLDFN--DIQHVIIFSMP 514
                   677888999999999999999999999998885.556777777999***********..888888877..599*******..58899999999 PP

>> SAM_DrpA  DNA processing protein A sterile alpha motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.4   1.2e+04      19      34 ..     362     377 ..     360     382 .. 0.76
   2 ?   10.7   0.0   0.00022       0.5      11      36 ..     404     429 ..     399     457 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.4
    SAM_DrpA  19 ilnildYqekneksLs 34 
                 + ni+++ +++++ L 
  CDO70573.1 362 VRNIMSFFKRQRQTLL 377
                 6789999898888776 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
    SAM_DrpA  11 kAGLtNlnilnildYqekneksLsLr 36 
                 +AG +Nl +l++++Y +++ k + L 
  CDO70573.1 404 RAGAANLDVLQVVEYVKQEAKMVYLL 429
                 79*****************9988775 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  16.0    0.0059        13      30     107 ..      46     118 ..      35     138 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0059
     PTPRCAP  30 pgrWlraraedgeedeeeEdqedeedeeedsedl..eggeeeaesqeeeqaeseeageeqalekaeeakdeekaskedae 107
                 ++ W    ae+++ ++ +E+qe+ +dee ++e    + ++e++  qe ++ ++ +a e+++ ++ae+ ++++      ae
  CDO70573.1  46 LTSWGAN-AEKDKAKRLQEEQEERDDEEREEERRreKARKERTLLQEAQEVLERKAAEDAKKTTAEKEEEQD------AE 118
                 5678754.5777777777777777777765432200222233333455555555555544444444444433......33 PP

>> VSG_B  Trypanosomal VSG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  12.5    0.0054        12      87     166 ..      40     125 ..      19     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0054
       VSG_B  87 kncgalkafWkeakkaakakkkk.....eltrpantrararanekiqqiaekaaeiyseikkekekakkar.aeklkkklnkAiyG 166
                 + + a+ ++W +++++ kak+ +     +  +  ++++r+ +++k + ++++a+e++++  +e +k+++a+ +e+ ++++ +Ai  
  CDO70573.1  40 QAKLAKLTSWGANAEKDKAKRLQeeqeeRDDEEREEERRREKARKERTLLQEAQEVLERKAAEDAKKTTAEkEEEQDAEILAAIAA 125
                 34444444444444444444444444446666667777777789999******************999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2156  (0.120252); expected 358.6 (0.02)
Passed bias filter:                      979  (0.0546043); expected 358.6 (0.02)
Passed Vit filter:                       186  (0.0103743); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.04u 0.42s 00:00:01.46 Elapsed: 00:00:00.62
# Mc/sec: 3012.99
//
Query:       CDO70574.1  [L=393]
Description: hypothetical protein BN946_scf184636.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-65  221.3   0.0    2.4e-65  220.4   0.0    1.4  1  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
    4.3e-50  169.7   0.0    8.7e-50  168.7   0.0    1.4  1  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
  ------ inclusion threshold ------
      0.011   14.6   0.3       0.98    8.2   0.1    2.4  3  DUF4921          Domain of unknown function (DUF4921)
       0.22   12.3   0.9          3    8.6   0.0    2.8  3  HIT              HIT domain
        0.6   10.6   2.0        3.6    8.1   2.0    2.2  1  DcpS_C           Scavenger mRNA decapping enzyme C-term bindi


Domain annotation for each model (and alignments):
>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.0   6.8e-69   2.4e-65       4     184 .]       7     181 ..       3     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 6.8e-69
  GalP_UDP_transf   4 eeddaiyashrrfnpltgewvlvsphrtkrpwqgqqekiskdtlpekDklkcyLcPgnsrangefnpkykstfvftndFpalsedsnyikteai 97 
                      ++  +   +hrr+npltge+vlvsphrtkrpw gq+e +++++lp++D ++cyLcPgn+ra g++n+ky++t vf+ndF+a+ +     ++   
       CDO70574.1   7 DPATH---PHRRLNPLTGEHVLVSPHRTKRPWLGQTEPPQQSNLPQYD-PQCYLCPGNTRAGGQRNEKYEHTMVFENDFAAVLPPPGPAAP--P 94 
                      45555...****************************************.*********************************998887777..4 PP

  GalP_UDP_transf  98 aknilfkaepayGrceviifsskheltladlspkdikavvaaWqektaelkakeypkcvlifENkGaamgvsnphPHgqiwaeehlp 184
                      a ++l+++ep++G c+vi+f+++h+ltla+l+p+di++++++W + +++ +a+e++++v+ifENkGa+mg+snphPHgq+w+ + +p
       CDO70574.1  95 APHPLLTTEPVQGGCDVICFHPRHDLTLARLPPNDIRRIIDEWCAIYKKRGAQEGIQYVQIFENKGAMMGCSNPHPHGQVWSLSAVP 181
                      689*******************************************************************************99988 PP

>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   0.0   2.4e-53   8.7e-50      14     164 ..     210     373 ..     190     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 2.4e-53
                    SS-HHHHHHHHHH...HH-TTEEEE-SSEEEE--TT--STT-EEEEE.SS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---S CS
  GalP_UDP_tr_C  14 gsillhdyvqmel...aekervvelkdsflavvpylakWPfevlllr.kaevkslaeladeekedlaailkklarkydnlfetsfeysmGlhqapl 105
                     + ll dyv+ e+   +++ rvv  +++++a+v ++a+WPfev+ll+ k++v+s++ l+ eek+  a +l +l+++ydnlf++sf ysmG+hq p+
     CDO70574.1 210 RACLLCDYVHYEVsvaQDEGRVVLKNEHWVALVSWWATWPFEVMLLPyKRHVPSIVHLTPEEKASFAQMLSQLTIRYDNLFSCSFAYSMGIHQRPI 305
                    678999**9966522145669**************************9************************************************ PP

                    CCCTT.........TT-.-EEEEE--BCSSTTEB----THHHHT-EEESS-HHHHHHHHH.CS-SS-TT CS
  GalP_UDP_tr_C 106 naeed.........nsw.lHaHfevpllrsatvrkieVGlelLperlrdllaEqaaerlrnalsevHke 164
                    +++ d         n + lH Hf +pllrsa vrk++VG+el++e++rdl++Eqaa+rlr  ls+vH+ 
     CDO70574.1 306 PPKSDdvpeeqdeeNLAhLHLHFAPPLLRSASVRKFLVGFELMAEPQRDLTPEQAAQRLR-GLSDVHYL 373
                    998777888888865557******************************************.******96 PP

>> DUF4921  Domain of unknown function (DUF4921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00027      0.98       8      54 ..      15      61 ..      12      72 .. 0.86
   2 ?    3.8   0.0    0.0056        20     217     259 ..     146     188 ..     129     195 .. 0.75
   3 ?   -3.3   0.0      0.84     3e+03     269     296 ..     217     244 ..     217     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00027
     DUF4921  8 qvnPftGtevWtvpgrgnrPlsekaeetapleeedreeacafcedrk 54
                ++nP+tG +v   p r++rP   ++e +++ +  + + +c  c  ++
  CDO70574.1 15 RLNPLTGEHVLVSPHRTKRPWLGQTEPPQQSNLPQYDPQCYLCPGNT 61
                68******************888887777777778999999998765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0056
     DUF4921 217 rnryvrYvavfqnWLkpaGasfdhlhkqlvaiDergvqaeaei 259
                 +++ ++Yv++f n  +  G s  h h q+ ++  +    ++e+
  CDO70574.1 146 AQEGIQYVQIFENKGAMMGCSNPHPHGQVWSLSAVPSLPATEL 188
                 356799**********************988776665555555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.84
     DUF4921 269 ynelavdyaakhnlviaendhavafagf 296
                 y ++ v +a ++  v+ +n+h va+++ 
  CDO70574.1 217 YVHYEVSVAQDEGRVVLKNEHWVALVSW 244
                 5677889999999999999999998765 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   3.8e+03      19      38 ..      14      34 ..       4      48 .. 0.69
   2 ?    8.6   0.0   0.00083         3       5      57 ..     228     281 ..     224     304 .. 0.86
   3 ?    0.2   0.1      0.35   1.3e+03      85      92 ..     321     328 ..     312     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                E-SS-SSSSEEEEEESS.TGC CS
         HIT 19 ldidpkapghlLvipkk.hls 38
                +  +p +  h+Lv p + + +
  CDO70574.1 14 RRLNPLTGEHVLVSPHRtKRP 34
                667888899****99884544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00083
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESS.TGCSGGGCCHHHHHHHHHHHHH CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkk.hlselhdlteeelakllsavkk 57 
                 + +vv+++++ +a++   +++p  + ++p k h++ + +lt+ee a + ++  +
  CDO70574.1 228 EGRVVLKNEHWVALVSWWATWPFEVMLLPYKrHVPSIVHLTPEEKASFAQMLSQ 281
                 5689*******************888888777*********9999888777665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.35
                 SSS-EEEE CS
         HIT  85 vahlHiHv 92 
                  ahlH+H 
  CDO70574.1 321 LAHLHLHF 328
                 68*****6 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.0   0.00099       3.6       8      99 ..     223     328 ..     216     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00099
                 HTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS.---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT-............... CS
      DcpS_C   8 akgkepervvyedekfvvlkDikpkaklhllvipkr.dikslrdLtkehlpllkemrekakkvieekynevdaeelrvgvhyqP............... 90 
                 +  +++ rvv+++e++v+l    +  ++ ++ +p++ +++s+ +Lt+e+    ++m  ++    ++ + +  +    +g+h +P               
  CDO70574.1 223 SVAQDEGRVVLKNEHWVALVSWWATWPFEVMLLPYKrHVPSIVHLTPEEKASFAQMLSQLTIRYDNLF-S-CSFAYSMGIHQRPippksddvpeeqdee 319
                 55677899**************************999*******************999988887777.4.4556888888888777777777777777 PP

                 -S-S--EEE CS
      DcpS_C  91 svyhlHlHv 99 
                  ++hlHlH+
  CDO70574.1 320 NLAHLHLHF 328
                 777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 2363.34
//
Query:       CDO70575.1  [L=767]
Description: hypothetical protein BN946_scf184636.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-95  318.6  26.8    6.1e-95  318.6  26.8    2.1  2  SDA1        SDA1
    1.3e-25   89.4   0.0    7.7e-25   87.0   0.0    2.3  2  NUC130_3NT  NUC130/3NT domain
  ------ inclusion threshold ------
      0.084   12.7   0.6          6    6.7   0.0    2.6  2  RhoGAP      RhoGAP domain
        2.5    6.3   4.8       0.39    8.9   0.1    1.7  2  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   2.0    0.0078        35     133     206 ..     248     294 ..     232     313 .. 0.37
   2 !  318.6  26.8   1.4e-98   6.1e-95       1     347 [.     428     764 ..     428     765 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0078
        SDA1 133 sdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeaseeekkkekeeekiskasela 206
                 +d s+de                          ee+  + +  +++++ +k++ + +kk ek ++++sk+++ a
  CDO70575.1 248 ED-SDDE--------------------------EEDLPNMKALQHRREINKKTRSGAKKLEKIAKAVSKKKKKA 294
                 11.1111..........................11111111111111111111112222222222222211111 PP

  == domain 2  score: 318.6 bits;  conditional E-value: 1.4e-98
        SDA1   1 mnedLLqDLveYkkskdKgVmmAArsLisLyRevnPelLkkkdrGkpaemelrsekkakkfGeeev.aegieGleLlekwkeeekkekre.eeeedsdd 97 
                 m+edLL DL+eY+ks+dK+V++AAr+L++L+RevnP +Lk+++rGk+a+m++ +++++  fG++++ a +ieGl Lle++ ++ ++e+ + + +e++dd
  CDO70575.1 428 MEEDLLGDLIEYRKSRDKAVTAAARGLLQLFREVNPGMLKRRERGKEASMGMAKGNQPLPFGHSAQaAVDIEGLVLLEDHLKKLREEEGAaSGDEEEDD 526
                 9****************************************************9**********99899***********9999999887655566789 PP

        SDA1  98 eddeedwevesdddseedseggwidvesdee.eieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeaseeekkkeke 195
                 +  +e+w+vesd+d+   s++gwi+v+sd+e + e+sd sede+ + +++++ + k +       +e++eeeee+++           + ++e+++e++
  CDO70575.1 527 QAAWEGWDVESDSDE---SSDGWISVSSDSEgDLEISD-SEDEDGKGKKKTKAKGKAKA------TEQDEEEEENDK-----------EGTAEENAEQA 604
                 99*********7666...5678*********9999999.77777555433333332222......222222222221...........12344555556 PP

        SDA1 196 eekiskaselattrILTpaDFaklkelra...eaavkkqlesakrkkkkkkdeee.........eeaeksedlvtasdieglakkrkatkeerlasvke 282
                  ++is+   latt+ILTpaDFa l+ lr+   ++av++  +s  ++k +     e         +++  +e +++++di g++kk+ka+++er+as+++
  CDO70575.1 605 VQRISS---LATTKILTPADFALLNDLRIkaaSEAVERGAGSGTKRKLAAL---EsqrksllgsSDGPITETFISEDDILGPRKKAKADYAERIASIEK 697
                 677777...*******************53334445555555444444333...234578888877777899*************************** PP

        SDA1 283 gredrekfgskka.kkkekelksttNkeKarkKnfqMtkhk..vkskkkrslrekqkalrahlerqkk 347
                 gre+rek+gs k+ kkk ++ +s+tN+eKar+K+++M++ +  vk+kkk+slrekq++lrah++r kk
  CDO70575.1 698 GREGREKYGSLKGkKKKGNP-SSSTNREKARNKPIMMILASgaVKGKKKASLREKQQKLRAHIDRAKK 764
                 *************5555555.*******************999************************9 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   1.7e-28   7.7e-25       1      52 []      60     111 ..      60     111 .. 0.99
   2 ?   -1.4   0.0      0.68     3e+03      14      30 ..     311     327 ..     308     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.7e-28
  NUC130_3NT   1 FlaqvahcYpketkefpqeLselLlehhsvLhpdlRkklvqaLvlLRnKdiI 52 
                 F+aqva+cYpket++fp+++s+lLle++ +L+pd+Rk+lvq+Lv+LRnKd+I
  CDO70575.1  60 FIAQVAQCYPKETADFPSQISTLLLENYGTLSPDTRKSLVQNLVMLRNKDVI 111
                 9*************************************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.68
  NUC130_3NT  14 kefpqeLselLlehhsv 30 
                 ++f ++L ++L+++ ++
  CDO70575.1 311 QTFGEKLYDILNKYDKR 327
                 789********998774 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0013         6      92     125 ..      35      68 ..       9      83 .. 0.86
   2 ?    3.4   0.1     0.014        62      74     115 ..      96     136 ..      89     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
                 HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTH CS
      RhoGAP  92 rlealkellekLPkenrdtLryLlehLkrvaens 125
                   ++++++++  P+en + +r L++++ +va++ 
  CDO70575.1  35 HYNSIRQIFQINPDENAQHFRELVAFIAQVAQCY 68 
                 47899**************************975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.014
                 GGHHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHH CS
      RhoGAP  74 kelyeelieaaksedeeerlealkellekLPkenrdtLryLl 115
                 k+l+++l+ + +++d  + +  l+ l+  LPk+  +tLr+ +
  CDO70575.1  96 KSLVQNLV-MLRNKDVITSITLLQTLFPLLPKTTSSTLRAFI 136
                 56777777.789999999********************9876 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   8.7e-05      0.39     241     322 ..     264     363 ..     248     371 .. 0.60
   2 ?   -2.3   1.0      0.23     1e+03     244     290 ..     571     611 ..     562     625 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 8.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
        OATP 241 pkkkeerakkkseeesaekkeekkkkeksksse..............eeelkslkdfpkal..krllknpifllvilssvf..eillvaGfitFlpkyl 321
                 ++++e ++k++s +++ ek ++  +k+k+k ++              +++ ++l d+++ +  +  l ++i+++ +ls v+  + l+v Gf+t++ kyl
  CDO70575.1 264 QHRREINKKTRSGAKKLEKIAKAVSKKKKKAETttanfpaiqllndpQTFGEKLYDILNKYdkRFSLDHKILIMQLLSRVMggHKLCVLGFYTYIMKYL 362
                 33333333333333333222222222222222222334455444433377777777776665445789************9444689***********9 PP

                 x RF
        OATP 322 E 322
                  
  CDO70575.1 363 T 363
                 5 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.23
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 244 keerakkkseeesa.ekkeekkkkeksksseeeelkslkdfpkalkrl 290
                 k+++ak k++++++ e++ee++k+ +       + +++++ ++ + +l
  CDO70575.1 571 KKTKAKGKAKATEQdEEEEENDKEGT-------AEENAEQAVQRISSL 611
                 22222222222222111222222222.......222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1680  (0.0937029); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.51
# Mc/sec: 4558.37
//
Query:       CDO70576.1  [L=253]
Description: hypothetical protein BN946_scf184636.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   7.1       0.32   11.3   7.1    1.6  1  DUF4061   Domain of unknown function (DUF4061)
       0.16   11.7   0.9       0.37   10.6   0.9    1.6  1  DUF4538   Domain of unknown function (DUF4538)
        4.5    6.3  11.7        5.7    5.9  11.7    1.1  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1
        6.3    6.5   7.3        9.4    6.0   7.3    1.2  1  TIP120    TATA-binding protein interacting (TIP20)
        9.2    5.4   8.4         12    5.0   8.4    1.1  1  TMPIT     TMPIT-like protein


Domain annotation for each model (and alignments):
>> DUF4061  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.1     9e-05      0.32      31      80 ..      99     147 ..      91     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
     DUF4061  31 leqleeiReqQekLarlhfeldaeeeelaekeedalresdenlkkLvskL 80 
                  +++ +iReq ek+ +++++++a+eee+++++  a r++ +++kk  ++ 
  CDO70576.1  99 AQRMARIREQNEKIKQRRLDVQADEEEYKKTQA-AERAKLAKMKKVQENV 147
                 578***********************9986555.4446666777766554 PP

>> DUF4538  Domain of unknown function (DUF4538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9    0.0001      0.37      31      49 ..     122     140 ..     120     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
     DUF4538  31 hpeeYkkiQkvnragikqe 49 
                 + eeYkk Q+ +ra++ + 
  CDO70576.1 122 DEEEYKKTQAAERAKLAKM 140
                 68*************9773 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  11.7    0.0016       5.7      62     137 ..      88     163 ..      52     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0016
       Atg14  62 iknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklq 137
                 ++++k + eel +++a++re+++++k+++   ++  ee kk+ a+ ++kl+k+++  e + +  e++ +++++k+q
  CDO70576.1  88 AQRDKLSEEELAQRMARIREQNEKIKQRRLDVQADEEEYKKTQAAERAKLAKMKKVQENVDKAREQNARRKMEKIQ 163
                 5677778888888888888888888888888888888888888888888888888888888888888888888776 PP

>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.3    0.0026       9.4      94     160 ..      93     159 ..      90     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0026
      TIP120  94 lapeevlerldelvealrktlskklkekavkqelEkqeelkrsvlrvvaalnsklesaevakssskw 160
                 l++ee+++r+ ++ e+ +k+ + +l+ +a + e+ k + ++r+ l  ++++++++++a+ +++ +k+
  CDO70576.1  93 LSEEELAQRMARIREQNEKIKQRRLDVQADEEEYKKTQAAERAKLAKMKKVQENVDKAREQNARRKM 159
                 67899****************************************************9966665555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.4    0.0034        12       5      73 ..      96     164 ..      92     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0034
       TMPIT   5 eelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelke 73 
                 eel++++ +++e+++++kq+  ++++ +++ +k+ + ++ +l ++k+  ++++k+ +++ ++++e+++ 
  CDO70576.1  96 EELAQRMARIREQNEKIKQRRLDVQADEEEYKKTQAAERAKLAKMKKVQENVDKAREQNARRKMEKIQG 164
                 78999999************************9999999999999999999999988888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2761  (0.153996); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 1584.39
//
Query:       CDO70577.1  [L=2103]
Description: hypothetical protein BN946_scf184636.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-148  493.6   0.1   4.9e-148  493.1   0.1    1.2  1  PGK       Phosphoglycerate kinase
    1.9e-50  168.2  24.1    5.1e-09   36.5   0.0    8.1  7  Sel1      Sel1 repeat
    1.4e-30  106.6   0.2    2.4e-30  105.8   0.2    1.3  1  PITH      PITH domain
    1.2e-11   45.1   0.0    2.6e-11   44.0   0.0    1.6  1  JHD       Jumonji helical domain
    5.3e-07   30.1   0.6    4.1e-06   27.2   0.6    2.3  1  JmjC      JmjC domain, hydroxylase
     0.0019   17.9   0.3     0.0071   16.1   0.3    1.8  1  Cupin_8   Cupin-like domain
  ------ inclusion threshold ------
      0.022   14.2   0.0       0.05   13.1   0.0    1.5  1  Cupin_4   Cupin superfamily protein
      0.072   13.9   6.0        1.6    9.8   0.8    4.0  4  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.1   0.1  2.2e-151  4.9e-148       1     378 []       9     405 ..       9     405 .. 0.94

  Alignments for each domain:
  == domain 1  score: 493.1 bits;  conditional E-value: 2.2e-151
                 GGGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-E.EEEEE--S--TT.S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHHHHHH CS
         PGK   1 vkdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgak.vvllsHlgrpkg.ekeklslkpvaerLsellgkeVkfvedvvgeeveea 97 
                 ++dldlkgkrvl+RvDfNvp+++ gk+t+  ri aalpTiky++e+ga+ v+l+sHlgrp+g  ++k+sl+pv ++L++ lgk+V fv+++vg++ve++
  CDO70577.1   9 ITDLDLKGKRVLIRVDFNVPMQD-GKVTNPARIVAALPTIKYAVENGASkVILMSHLGRPDGkPNPKYSLEPVSKELEKHLGKSVIFVHECVGPDVEKT 106
                 689******************87.**********************9977**********99456********************************** PP

                 HHT-TTT-EEEES-GGGSTTTT...........TT-H......HHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCSEEEE-HHHHHHHHHHHHHHHS CS
         PGK  98 iaelkegevllLeNvrfykeEe...........knde......elakklasladvyVnDAFgtahrahaStvgiakvlsaaaGllmekElealskvlen 179
                 ++e++eg+v+lLeN+rf+ eEe           k  +      e+++ l++l+dvyVnDAFgtahrah+S+vg++   ++aaG+lm+kEl++++k+le+
  CDO70577.1 107 VNEAPEGSVILLENLRFHIEEEgsskdkdgkkvK--AdpakvqEFREGLTRLGDVYVNDAFGTAHRAHSSMVGVKLS-QRAAGFLMKKELDYFAKALEH 202
                 *******************998555555554442..04455557******************************966.55******************* PP

                 --SSEEEEEEES-HHHCHHHHHHHTTT-SEEEEETCHHHHHHHH.TT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESS.S.STTS.EEE CS
         PGK 180 perplvailGGakvsdkikvienLlekvdkliigGgmantFlka.qgleigkslveedklelakellekakkkgvkillpvDvvvake.e.aekeakvv 275
                 perp++ailGGakvsdki++i+n+l+kvd+lii+Ggma+tF k+ ++++ig+sl+++  +e +++l+ekak+++ ki++pvD+v+a++ +  +k++ ++
  CDO70577.1 203 PERPFLAILGGAKVSDKIQLIDNMLDKVDSLIICGGMAFTFKKTlNNVKIGQSLFDAPGAEKVASLVEKAKQRNIKIVFPVDYVIADKfDkDAKTGVAT 301
                 ********************************************9******************************************953333447888 PP

                 ECCG--TT-EEEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCH.TSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHH CS
         PGK 276 eveaipedemalDigpktielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatk.galsivGGgdsaaaveklgladkvshvStGGgAsLe 373
                 ++e ip+d+m+lD gpk+ elf++++ e+kt++wnGp Gvfe+++f++G+ka+++a  ea + ga++ivGGgd+a++v+++g +dk+shvStGGgAsLe
  CDO70577.1 302 DEEGIPDDWMGLDAGPKSRELFRQTVLESKTILWNGPPGVFEFPAFSAGSKALLDATIEAAQkGAIVIVGGGDTATVVANYGAEDKLSHVSTGGGASLE 400
                 9999****************************************************9998888************************************ PP

                 HHCTS CS
         PGK 374 lLegk 378
                 lLegk
  CDO70577.1 401 LLEGK 405
                 ****8 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   5.6e-08   0.00013       2      38 .]    1649    1684 ..    1648    1684 .. 0.93
   2 !   28.6   0.2   6.9e-10   1.5e-06       1      38 []    1685    1720 ..    1685    1720 .. 0.97
   3 !   30.8   0.1   1.5e-10   3.3e-07       2      38 .]    1722    1757 ..    1721    1757 .. 0.87
   4 !   19.8   0.1   4.2e-07   0.00093       1      38 []    1761    1798 ..    1761    1798 .. 0.92
   5 !   36.5   0.0   2.3e-12   5.1e-09       2      38 .]    1800    1835 ..    1799    1835 .. 0.96
   6 !   16.4   0.8   4.8e-06     0.011       1      37 [.    1836    1872 ..    1836    1873 .. 0.85
   7 !   24.4   1.1   1.5e-08   3.3e-05       1      38 []    1874    1909 ..    1874    1909 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.6e-08
        Sel1    2 eAmyrLGmfylylnGl.gvpkDpekAiewyekAAeqGd 38  
                  eA++ L+   ++ +G  g+  D e+A+++y +AA+q++
  CDO70577.1 1649 EAQFFLA--NCHGTGMlGLQVDHERAYHLYLQAAKQNH 1684
                  8******..*99999977989***************98 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 6.9e-10
        Sel1    1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38  
                  ++A+yr++   + + G g+++Dp++A  +y+kAA++Gd
  CDO70577.1 1685 PAACYRVA--VCNEIGAGTKADPQRAAAFYRKAASLGD 1720
                  68******..***************************7 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 1.5e-10
        Sel1    2 eAmyrLGmfylylnGlg.vpkDpekAiewyekAAeqGd 38  
                  +Amy+LG   ++l Gl    ++p++Ai w+++AAeq d
  CDO70577.1 1722 AAMYKLG--VILLRGLLkQQPNPREAIGWLRRAAEQAD 1757
                  7******..777****65666**************975 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 4.2e-07
        Sel1    1 aeAmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqGd 38  
                  ++A++ L+m+y  +n   g vp Dp  A e+y +AA +G+
  CDO70577.1 1761 PHALHELAMLY--ENPNnGvVPYDPAYAKELYTRAAHLGY 1798
                  689*****777..****998999*************9996 PP

  == domain 5  score: 36.5 bits;  conditional E-value: 2.3e-12
        Sel1    2 eAmyrLGmfylylnGlg.vpkDpekAiewyekAAeqGd 38  
                  +++++LG  ++y++G+   p Dp++ i wy kAAe+G+
  CDO70577.1 1800 HSQFKLG--QCYEYGTLtCPVDPRRSIAWYTKAAEKGH 1835
                  79*****..*******99*******************9 PP

  == domain 6  score: 16.4 bits;  conditional E-value: 4.8e-06
        Sel1    1 aeAmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqG 37  
                  aeA  +L  +y  l+G  g +++  ++A+ w ++AA++G
  CDO70577.1 1836 AEAELALSGWY--LTGSeGvLKQSDSEAYLWARRAANKG 1872
                  57888888555..****996777**************98 PP

  == domain 7  score: 24.4 bits;  conditional E-value: 1.5e-08
        Sel1    1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38  
                  + A y++G  y+ + G gv++D+e A +wy +AA+qG+
  CDO70577.1 1874 SKAEYAVG--YYAEVGIGVKQDIEFAKRWYMRAAAQGN 1909
                  679*****..888************************7 PP

>> PITH  PITH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.2     1e-33   2.4e-30       1     130 [.    1953    2078 ..    1953    2084 .. 0.87

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 1e-33
        PITH    1 LyqyIdlkkveclNeseegsvkkvlkksweerldekkyleSdaDeqLlihipFtqsvklksllikstkkeeeesaPktiklfkNrkkkldFdda.s. 95  
                  L+++ dl++++clNe++e+++k ++  +++  ++ + yleSdaDeqLl+++pF+q+vk++ + i+s++    ++aP++ikl +N+ ++ldFdd+ + 
  CDO70577.1 1953 LLEHLDLSQLTCLNETQEHNLKGIVADKKK--NTGSAYLESDADEQLLLTLPFNQAVKIRAIAIQSSN---VSQAPRKIKLVTNK-PTLDFDDLeDg 2043
                  7899*********************66554..44467***************************8865...789**********5.777*****556 PP

        PITH   96 .eptqeielseedeeketvelplrfvkfqnvssLtl 130 
                   + +qe+else+d  +e  ++plrfvkfq+v+sL +
  CDO70577.1 2044 gAVVQELELSEDD-VREGRKVPLRFVKFQSVNSLHV 2078
                  55999***98554.44578***************87 PP

>> JHD  Jumonji helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.2e-14   2.6e-11       2     103 ..     811     916 ..     810     917 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.2e-14
         JHD   2 niemQlriyeiEkklkteekfkfPsfetihWfvakrlleklkelneegkraaeylvkgakalltalkewtkkeava..ekeeeip.etik.pskLikdl 96 
                 n++ Qlr+ eiE + ++++kf+fP+f  ++W++a++ l ++k  +e   r  e + + a  l++  +++++ +++a  + +ee+p ++ik    L ++l
  CDO70577.1 811 NVPTQLRVREIEIATHVPKKFRFPYFTKLCWYAAEKYLRDFKAKEEFPPRVLESVEALADFLVAEARTMERGNDTAkrQAKEEVPgDRIKdAPALAREL 909
                 99****************************************999888888887777777777777777755443322678899943454245799999 PP

         JHD  97 skeirla 103
                  + +r+a
  CDO70577.1 910 RWRVRHA 916
                 9999886 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.6   1.8e-09   4.1e-06       1     114 []     706     806 ..     706     806 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.8e-09
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTGCCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT-EE CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskknskeqpdllrhkstlispkqlekegipvyrfvqkpgefVfvfpgayH 99 
                 ++++g+ +++t+whi+  g++ + y+++ + kv y+i +  ++ +    ++++s+     +  ++   +  +++ e   v +++ k g++++++ g++H
  CDO70577.1 706 YCLMGVGGAWTDWHIDFAGSS-VYYHIINGAKVFYFIRPTPANLAA---YERWSG-----TEVQNH-SWLGDMCDE---VFKVELKTGDTMIIPTGWIH 791
                 6899************99998.**********99999876655444...555431.....223333.333333344...788999************** PP

                 EEEESSSEEEEEEEE CS
        JmjC 100 svfnlgfniaeavnf 114
                 +v +  +++ +  nf
  CDO70577.1 792 AVYTPVDTLVFGGNF 806
                 ***999998776666 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   3.2e-06    0.0071     136     234 ..     708     795 ..     672     815 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.2e-06
     Cupin_8 136 WlGnsasvsslHkDh..yeNlycvvrGrKkftLfpPsdapfl.yeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLylPalWfHe 231
                  +G  ++ +  H D       y +++G K f ++ P+ a+   ye+  s  ++ +++s++            ++d+  +++v+l+ G+++ +P +W H 
  CDO70577.1 708 LMGVGGAWTDWHIDFagSSVYYHIINGAKVFYFIRPTPANLAaYERW-SG-TEVQNHSWL----------GDMCDE--VFKVELKTGDTMIIPTGWIHA 792
                 48888888999999866677889999999999999998876524443.11.222333333..........356666..9******************** PP

     Cupin_8 232 Vks 234
                 V++
  CDO70577.1 793 VYT 795
                 *85 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05      0.05     164     279 ..     760     923 ..     749     950 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
                 --TTCCG--.S-SEEEEE-TT-EEEE-TT-EEEEEBBT-CCEEEEE.ECCEEHCCH........................................... CS
     Cupin_4 164 eplkildef.epvedfvLepGDlLYlPrgviHqgvaedesltlSvg.lraptaael........................................... 217
                 ++ + l+++ + v+ + L++GD + +P g+iH  +++ ++l +    l++   +++                                           
  CDO70577.1 760 QNHSWLGDMcDEVFKVELKTGDTMIIPTGWIHAVYTPVDTLVFGGNfLHS---YNVptqlrvreieiathvpkkfrfpyftklcwyaaekylrdfkake 855
                 556667777788999**********************9988776442222...2222335669999999999999999999999999999999999999 PP

                 .........HHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHHHHHHHHHCS-HH CS
     Cupin_4 218 .........lesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellrdpalleeflgql 279
                          +e+++d+l+ ++ ++ er +d  +r  qa++e++ d i++  a  +el++++++++ +  + 
  CDO70577.1 856 efpprvlesVEALADFLVAEARTM-ERGNDTAKR--QAKEEVPGDRIKDAPALARELRWRVRHAAGYSSDD 923
                 999999888888888888888887.777766655..99999999999999999999999888777666555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.062   1.4e+02      18      43 ..    1579    1603 ..    1563    1604 .. 0.87
   2 ?   -4.0   0.0         8   1.8e+04      21      42 ..    1634    1655 ..    1630    1656 .. 0.52
   3 ?   -0.8   0.1       1.8     4e+03      16      34 ..    1704    1722 ..    1701    1730 .. 0.76
   4 ?    9.8   0.8    0.0007       1.6      10      42 ..    1735    1768 ..    1722    1770 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.062
      TPR_14   18 deAiallrralalaPddaeawlllaq 43  
                  +e i+ +r++++++Pd +ea++++a+
  CDO70577.1 1579 KEYIDQYRQRIKDDPD-PEAQFQYAK 1603
                  566899*********9.9***99996 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 8
      TPR_14   21 iallrralalaPddaeawllla 42  
                  +++ rr+  ++   +ea+++la
  CDO70577.1 1634 LKVIRRLATQGQPYDEAQFFLA 1655
                  5555555444433356666555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.8
      TPR_14   16 dpdeAiallrralalaPdd 34  
                  dp++A+a +r+a +l+ + 
  CDO70577.1 1704 DPQRAAAFYRKAASLGDTA 1722
                  8999999999998876554 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.0007
      TPR_14   10 allalGdpdeAiallrralal.aPddaeawllla 42  
                  +l ++ +p+eAi  lrra ++ + +++ a+ +la
  CDO70577.1 1735 LLKQQPNPREAIGWLRRAAEQaDEENPHALHELA 1768
                  567899***********98873678999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.50
# Mc/sec: 12739.17
//
Query:       CDO70578.1  [L=705]
Description: hypothetical protein BN946_scf184636.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-55  188.0   0.0    2.7e-55  187.5   0.0    1.1  1  CN_hydrolase   Carbon-nitrogen hydrolase
    9.9e-39  132.8   0.2    1.6e-38  132.1   0.2    1.3  1  DnaJ_C         DnaJ C terminal domain
    1.1e-21   76.7   1.0    2.2e-21   75.7   1.0    1.5  1  DnaJ           DnaJ domain
    2.2e-16   60.0  17.2    3.8e-16   59.2  17.2    1.4  1  DnaJ_CXXCXGXG  DnaJ central domain
    8.1e-07   28.9  10.7    0.00014   21.7   1.4    2.5  2  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.0   7.5e-59   2.7e-55       2     251 ..      12     274 ..      11     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 7.5e-59
                   EEEEEBB-STTHHHHHHHHHHHHHHHHHHT......TESEEEEETTTTTBS......SSHHHHHHHHB.............HSSSHHHHHHHHHHHH CS
  CN_hydrolase   2 vAvvQlpqkaadleanlqklleliaeAark......gadLivlPElfitgy......keeahfleaAe.............aglgetlallaalark 73 
                   +A++Ql  +  d++anl+++ e+i++Aa+       + dL+vlPE+f+  y      +       +Ae               ++++++ l+a+ar+
    CDO70578.1  12 LALIQLGEVGPDKDANLKHAREMIRKAASGsngavpKPDLVVLPECFNSLYgvtyfpV-------YAEtigytpgqsydvaSSQSQSVKMLSAAARE 101
                   79******99*******************999888888*************5444440.......44445666667777777899************ PP

                   HTEEEEEEEEEEEC.CTTEEEEEEEEEEEETTSEEEEEEE-SS--E.ECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHT CS
  CN_hydrolase  74 ngiavviglierel.tngklqayntavlldldgklvgkyrKlhLfp.geprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalk 168
                     +++++g i++++   gkl  ynta++ +++g+lv+ +rK+hLf+ ++p++ ++ e+e++++g+ i  fdt++++iG+ iCy+ +fpel++++ ++
    CDO70578.1 102 ERVWLIGGSIPERDaGTGKL--YNTATVYSPKGELVAMHRKVHLFDiDIPGKIKFKESEILSAGNTINQFDTDFARIGLGICYDVRFPELAMTNTRR 196
                   ********777776688888..*************************************************************************** PP

                   T-SEEEEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEE CS
  CN_hydrolase 169 gaeilvnlserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaei 251
                   g  +l++    + +   +gp +well+rara++n+++ ++++++    +++++ +ghS+++dp G+++a+   ee ++++a+i
    CDO70578.1 197 GCHMLIYP---SAFNTTTGPLHWELLQRARAVDNQVYFAMCSPARD-LNQSYHAWGHSMVVDPMGKVIAETEDEE-DIVYAHI 274
                   *******2...367779*****************************.*********************9988777.7****98 PP

>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.2   4.4e-42   1.6e-38       2     148 .]     420     639 ..     419     639 .. 0.97

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 4.4e-42
                 EEEEEE-HHHHHH-.EEE.EEEE..........................................................................TE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................xxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi...................................................................kkekkt 33 
                  ++++++le+lykGkt+k++++rnvi                                                                   + ekk 
  CDO70578.1 420 VHRIHVTLEDLYKGKTTKLALTRNVIcpkcsgkggkegavrpctscsgrgikitlrqmgpmiqqlqqpcdecngtgeiinqkdrckqcngkkvVPEKKM 518
                 6899***************************************************************************************98777889 PP

                 EEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEE......EE--TT-EEEETT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
      DnaJ_C  34 levkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvkl......kitqpgevlrikgk 125
                 lev+i++G++ gq+i+++ge d+ + + pGD+i++i++kph++F+r++ndl++e e++l +al Gg++ ++ ld ++ +      +++++++ ++i+g+
  CDO70578.1 519 LEVHIDKGMRGGQTITFSGESDQAPgVTPGDVIIVIEEKPHERFRRQDNDLFYEQEVDLLTALGGGQFAIRHLDDRALIvnippgEVLKNDDLKVIRGQ 617
                 **********************8888***********************************************99998887788888************ PP

                 S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 126 GmpklkkpgkrGdlyvevkvefP 148
                 Gmp+++ +++ Gdl+v+++v+fP
  CDO70578.1 618 GMPSQR-HHEPGDLFVRIHVKFP 639
                 *****8.***************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   1.0   6.2e-25   2.2e-21       1      63 []     313     371 ..     313     371 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 6.2e-25
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 +yY++L+vs+dase+e+kkaYrk+al++HPDk  +dp   e Fke+++AyevLsdp+kR++YD
  CDO70578.1 313 KYYDLLEVSPDASESELKKAYRKKALRLHPDKG-GDP---ELFKEVTHAYEVLSDPQKRSIYD 371
                 59*******************************.777...99********************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2  17.2     1e-19   3.8e-16       1      67 []     446     511 ..     446     511 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 1e-19
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsG.vvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+kC+G+g k+g+++ C++C+G+G +++ +q  +gp++qq q++C+eC+GtG++i++kd+Ck+C+Gk+
     CDO70578.1 446 CPKCSGKGGKEGAVRPCTSCSGRGiKITLRQ--MGPMIQQLQQPCDECNGTGEIINQKDRCKQCNGKK 511
                    ************************6667776..9********************************86 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   2.3   6.2e-05      0.22      12      44 ..     445     473 ..     440     476 .. 0.89
   2 !   21.7   1.4     4e-08   0.00014       7      44 ..     482     515 ..     477     520 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-05
                 E-TTTTTTSEETTE......E-TTTTTSSEEE- CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkglipT 44 
                  C++C g G  e++      +C  CsG+g+  T
  CDO70578.1 445 ICPKCSGKGGKEGA----VRPCTSCSGRGIKIT 473
                 6********99999....78********99776 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 4e-08
                 HHCEEE-TTTTTTSEETTE......E-TTTTTSSEEE- CS
   Anti-TRAP   7 peLEtkCdaCngsGkiepeeprasleCPkCsGkglipT 44 
                  +L ++Cd+Cng+G+i  +       C +C+Gk+++p 
  CDO70578.1 482 QQLQQPCDECNGTGEIINQ----KDRCKQCNGKKVVPE 515
                 6899************999....447*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4502.84
//
Query:       CDO70579.1  [L=209]
Description: hypothetical protein BN946_scf184636.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-52  177.0   0.0    2.4e-52  176.8   0.0    1.0  1  Ras          Ras family
    3.2e-21   75.8   0.0    4.4e-21   75.3   0.0    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.5e-06   27.8   0.0    3.5e-06   26.6   0.0    1.6  1  Arf          ADP-ribosylation factor family
    0.00046   20.1   0.0      0.023   14.6   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.086   12.2   0.0       0.11   11.8   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.0   6.6e-56   2.4e-52       1     160 [.      22     192 ..      22     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 6.6e-56
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 Klv+vGd+++GKt+ll+ +++++F+e y++T+ +++y++ ++++gk v+l +wDTAGqee+++lr+l+y ++++il+v++++   s+ nv+ kw+ e+ 
  CDO70579.1  22 KLVVVGDGGCGKTCLLIVYAENRFPEAYIPTV-FENYVTLVNFEGKLVELALWDTAGQEEYDRLRPLSYPESDVILIVFSVDFPVSLANVQdKWYPEVA 119
                 99******************************.****************************************************************** PP

                 HHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee............kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 + +e  vp++Lv++K+Dl++            +  v+ e+g  +ak++g++++e+SAkt  nv+e+f+ +l+e 
  CDO70579.1 120 HFCE-GVPLILVATKTDLRRdeqtrrmlgaqgQVPVTSEQGAMVAKDIGARYIECSAKTGDNVREVFNLALKES 192
                 ****.7*************************999**********************************998875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   1.2e-24   4.4e-21       1     120 []      22     136 ..      22     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 1.2e-24
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 K+v+vGd+g GKt+ll  + e++f e + +t+  +++t   ++++g       k v+l++WDtaGqe+++ l+pl + e++++++v+      s +n+ 
  CDO70579.1  22 KLVVVGDGGCGKTCLLIVYAENRFPEAYIPTVFENYVTL--VNFEG-------KLVELALWDTAGQEEYDRLRPLSYPESDVILIVFSvdfPVSLANVq 111
                 99******************************9999874..45554.......6799*****************************9844433557763 PP

                 HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  96 keWlkelkkvagkspvilvgnkiDl 120
                 ++W+ e+ + ++  p+ilv++k+Dl
  CDO70579.1 112 DKWYPEVAHFCEGVPLILVATKTDL 136
                 68*********************95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   9.7e-10   3.5e-06      14     169 ..      20     186 ..      15     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 9.7e-10
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE...TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 + +++++G  + GKt +l  + ++++ +  +PT+  n  +l     k +++ +wD  Gqe+  +l    +++ d+++ v  +     l++ +++    +
  CDO70579.1  20 KRKLVVVGDGGCGKTCLLIVYAENRFPEaYIPTVFENYVTLVNfegKLVELALWDTAGQEEYDRLRPLSYPESDVILIVFSVDFPVSLANVQDKWYPEV 118
                 5689*********************987589***99988775545589************999999999999997655554444556777776665544 PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS........SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseeelrellgleelk........gkrkleiqkcsavkgeglkegle 169
                 + +  + v+l+++a K Dl+ + +++ +  + g   ++        ++     ++csa +g+++ e ++
  CDO70579.1 119 A-HFCEGVPLILVATKTDLRRDEQTRRMLGAQGQVPVTseqgamvaKDIGARYIECSAKTGDNVREVFN 186
                 3.4578999999999999999888777766666555443333332256666667788888888877765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.019        67     101     118 ..      22      39 ..      17      48 .. 0.83
   2 !   14.6   0.0   6.3e-06     0.023      17      95 ..      93     186 ..      83     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.019
                  EEEEECSTTSSHHHHHHH CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLina 118
                    v+vG  G GK+ L+ +
   CDO70579.1  22 KLVVVGDGGCGKTCLLIV 39 
                  5799**********9865 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.3e-06
                  -EEEEEEESTTTT--HHHHHHHHHHHHH..TT-EEEEEEE-GGG--HHH.............HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHH CS
  RsgA_GTPase  17 dqllivvslkepelslnlldrfLvlaee..kgiepvivlnKiDlleeee.............eleelkeelealgyevllvsaktkegleelke 95 
                  d +liv+s++ p    n  d+   ++ +  +g+++++v +K+Dl  +e+             + e+ +   +++g + + +sakt+++++e+ +
   CDO70579.1  93 DVILIVFSVDFPVSLANVQDKWYPEVAHfcEGVPLILVATKTDLRRDEQtrrmlgaqgqvpvTSEQGAMVAKDIGARYIECSAKTGDNVREVFN 186
                  7899******9999999999988555443389****************99********9999899999999****************9998765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.11       1      61 [.      22      81 ..      22     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
   Gtr1_RagA  1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnl.tlnlwDcgGqeaf 61
                k++ +G +g GKt++  +  +n  ++   ++ +  +   + v+f g+l +l lwD  Gqe++
  CDO70579.1 22 KLVVVGDGGCGKTCLLIVYAENRFPE--AYIPTVFENYVTLVNFEGKLvELALWDTAGQEEY 81
                78999*********986655666666..4677888888999999999868*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1532.62
//
Query:       CDO70580.1  [L=225]
Description: hypothetical protein BN946_scf184636.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-33  115.2   0.1    5.4e-33  114.7   0.1    1.2  1  PIG-X     PIG-X / PBN1


Domain annotation for each model (and alignments):
>> PIG-X  PIG-X / PBN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.1     3e-37   5.4e-33       2     209 ..      11     206 ..      10     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 3e-37
       PIG-X   2 tGlHptlqltv.ssaekslkppekeCklllyltlpssvfvDkYqLaeldelfaelvvvsgevdLEaPeykvkewgsevllelatpkeekeeseeewtvt 99 
                 +G+H tl++tv   a+++      + +l+++++l+++v++D+Y+La++     ++++++g +dLE+P+++v+++gs++ll  +t +   ++s+ ++t++
  CDO70580.1  11 HGFHLTLSTTVtVPASSE----LAHRTLHVVHDLDPHVYADQYELAQRPG---YSFLLWGTTDLEKPVSAVPQNGSVLLLTADT-TIVPHHSPISITLE 101
                 6**********5222233....3899********************6555...8**************************7766.89999********* PP

       PIG-X 100 lPlHlRYlap...sseesgytevelpsPevfwaCeseaeegeklskspfdrknlgydglfgektvFyhlkpkpeseslvesievPvgdtsdaalVeigT 195
                 +PlH+RY +p   +++++ + +v+l+ P  f+a e+ +    ++++         y +l g      +l p++++++  ++i++P g +++  +V++gT
  CDO70580.1 102 VPLHARYARPiaaADNQDAFYTVNLKRPIGFFAEEDGTAT--EMPSVLR-----PYASLHGWPSSPLSLIPDSAPDDP-LEITIPAGVLDHIVWVDVGT 192
                 ************9889*****************9554443..4444333.....344444444445678999999887.******************** PP

       PIG-X 196 llvvllgflwvlwk 209
                 +lv++++f+++l +
  CDO70580.1 193 ALVMITMFFYLLHA 206
                 **********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1658.01
//
Query:       CDO70581.1  [L=537]
Description: hypothetical protein BN946_scf184636.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-59  199.7   0.1    4.2e-31  108.0   0.0    2.0  2  6PF2K       6-phosphofructo-2-kinase
    2.4e-21   76.3   0.0    5.5e-21   75.1   0.0    1.6  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.02   14.3   0.0    1.3  1  KTI12       Chromatin associated protein KTI12
      0.013   15.7   0.0      0.025   14.8   0.0    1.5  1  AAA_33      AAA domain
      0.087   12.4   0.0        0.3   10.7   0.0    1.9  2  Rsa3        Ribosome-assembly protein 3
      0.093   13.2   0.0       0.17   12.3   0.0    1.4  1  AAA_17      AAA domain


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   5.3e-29   1.6e-25       7     102 ..      94     197 ..      89     204 .. 0.94
   2 !  108.0   0.0   1.4e-34   4.2e-31     111     223 .]     221     332 ..     216     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 5.3e-29
                 HHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS.........---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS- CS
       6PF2K   7 tnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaska.........lsdaeffrpdneealklreklalaalkdllaylneee 96 
                 +  ++ k+v+ +vGLpargK+y+s+kl+rylkwl ++ kvFnvg+ rr+ +++         ++ a++f++dn ea++lr++la + l+ l+++l  e+
  CDO70581.1  94 PDYSEAKIVLAMVGLPARGKSYLSNKLMRYLKWLEYDVKVFNVGQLRRSRARQkakqsgkreDHRASYFSHDNVEATRLRDQLANDSLEMLIQWLR-EG 191
                 5667899*****************************************998888899999988899*****************************9.99 PP

                 -SEEEE CS
       6PF2K  97 gqvaif 102
                 g+v+i+
  CDO70581.1 192 GNVGIH 197
                 ****96 PP

  == domain 2  score: 108.0 bits;  conditional E-value: 1.4e-34
                 HHHHHHHHH.HHTT-EEEEEEEE--HHHHHHHHHHHH.TTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTEEEEE---SH CS
       6PF2K 111 rRklilefv.eennlkvlflesicsdeeiikeNikev.klsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvidvgkslvvnnvqgy 207
                 rR+ i+e+v +e+++ v+fles+c+d++ii++Ni+++ +++ pDYkd ++eea +df +R+++ye++ye ++   + +lsy+++ +vg++++  +++gy
  CDO70581.1 221 RRQKIVERVsKEKGMSVIFLESVCDDPAIIAANIALKvSSGDPDYKDMSREEAKADFERRIREYEAVYETIT---EPHLSYLRIKNVGSQVTLCHIHGY 316
                 56655555516677********************97615668******************************...889********************* PP

                 HHHHHHHHHTT---S- CS
       6PF2K 208 lqsrivyyllNihlkp 223
                 lqsri +yl+N+hlkp
  CDO70581.1 317 LQSRIAFYLMNLHLKP 332
                 *************987 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.8e-24   5.5e-21       1     114 [.     335     445 ..     335     454 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.8e-24
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE...EE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai...ysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaee 96 
                 +++ RHGe++ n+eg+++  +d+pL+e+G++ A+al + + +   da    ++S+l+R++qTa+ +      p  +++ L+E+d G+++g+t++ei+++
  CDO70581.1 335 IFFSRHGESQFNVEGKIG--GDSPLSERGMRYARALPALITDNIGDAPltvWTSTLQRTIQTAQYLP----YPKLTWKSLDELDAGVCDGMTYEEIEQA 427
                 6899**********9665..69********************555555677************9987....79************************** PP

                 ..HSHHHHHHHHH-GGG- CS
  His_Phos_1  97 ypeeleawlrdpadvrpp 114
                 ype+++++++d+ ++r+ 
  CDO70581.1 428 YPEDFANRDEDKFNYRYR 445
                 ***********9988764 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.7e-06      0.02       5      62 ..     104     163 ..     101     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.7e-06
                 EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH...TTSSS--GGGHHHHHHHHHH CS
       KTI12   5 vltGlPssGKstrakeLakaleeekrsvvviddeslg..iekdsykdsakekalRsslrs 62 
                  + GlP+ GKs ++++L ++l+  +++v v +  +l+   ++++ k+s k ++ R+s +s
  CDO70581.1 104 AMVGLPARGKSYLSNKLMRYLKWLEYDVKVFNVGQLRrsRARQKAKQSGKREDHRASYFS 163
                 479*****************************9999944444447788888888887665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.2e-06     0.025       1      72 [.     102     193 ..     102     197 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.2e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrr.rlfgtdqqskt..............dytrvldrlyqilnelarkalsagrn 72 
                 ++ +vGlp+ GKs+l+ +l++ l+     + + +  +lrr r + + +qs +              + tr++d+l +   e++ + l++g+n
  CDO70581.1 102 VLAMVGLPARGKSYLSNKLMRYLKwleydVKVFNVGQLRRsRARQKAKQSGKredhrasyfshdnvEATRLRDQLANDSLEMLIQWLREGGN 193
                 678*****************999966665444555556664555555555555555666666666655555555333333444455666555 PP

>> Rsa3  Ribosome-assembly protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   4.5e+03      16      27 ..      28      39 ..      27      41 .. 0.86
   2 ?   10.7   0.0    0.0001       0.3      15      43 ..     165     193 ..     162     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
        Rsa3 16 DLDelRkapdFk 27
                D+++++++pd +
  CDO70581.1 28 DVNAIKSSPDIT 39
                99******9965 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
        Rsa3  15 dDLDelRkapdFkdksLplLidaLkqGtn 43 
                 d +++ R  + + ++sL++Li+ L++G+n
  CDO70581.1 165 DNVEATRLRDQLANDSLEMLIQWLREGGN 193
                 5577788899999**************98 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05      0.17       1      63 [.     106     178 ..     106     201 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                 EE-TTSSHHHHHHHHHH.....HHTEEEEEHHHHHHHHHHTT....TS.HSSHHHHCTSHHHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklve.....kygfthlsaGdllreeakrg....gl.akardemrklpleekkelqkeaae 63 
                 +G+P  GK+ +++kl++     +y++++++ G+l r+ a+++    g  +++r  +   +++e  +l++++a+
  CDO70581.1 106 VGLPARGKSYLSNKLMRylkwlEYDVKVFNVGQLRRSRARQKakqsGKrEDHRASYFSHDNVEATRLRDQLAN 178
                 7***************87777799**********998876663221211222222224555555666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3633.20
//
Query:       CDO70582.1  [L=460]
Description: hypothetical protein BN946_scf184636.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-44  151.4   0.0    5.2e-44  149.8   0.0    1.8  2  PNK3P        Polynucleotide kinase 3 phosphatase
    5.4e-14   52.6   0.0    2.7e-11   43.8   0.0    2.5  1  AAA_33       AAA domain
     0.0012   18.9   0.1      0.031   14.4   0.0    2.6  2  Hydrolase_6  Haloacid dehalogenase-like hydrolase
     0.0063   16.0   0.6      0.076   12.4   0.6    2.2  1  KTI12        Chromatin associated protein KTI12
  ------ inclusion threshold ------
      0.024   13.9   0.0       0.57    9.4   0.0    2.5  3  Zeta_toxin   Zeta toxin
      0.041   13.9   0.0      0.096   12.8   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   1.7e-47   5.2e-44       2     162 .]      89     239 ..      88     239 .. 0.94
   2 ?   -1.8   0.0      0.75   2.2e+03     134     155 ..     416     439 ..     339     441 .. 0.62

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 1.7e-47
       PNK3P   2 iaaFDlDstliktksgkefakdaddwkllsesvlekLkklkeegykivifsNqggvvekktkkslekfkekieallkel.dvpllvyaatkkdkyRKPe 99 
                 +aaFDlD++lik++  k+    +  ++++++ v++kLk+l+e+gy ivi++Nq   +    ++ ++++k+ki  +++ l dvp+ ++aat+kd yRKP 
  CDO70582.1  89 VAAFDLDGCLIKSSFPKK--GAPPTFEWWRPVVPKKLKELHEQGYAIVIITNQALRT----QSLINDWKKKIPLIANVLsDVPFHLFAATEKDGYRKPI 181
                 89*********9877444..45789****************************8554....5899**************9******************* PP

       PNK3P 100 tGmweelkkdlee.kleidkeksfyvGDaagrklkkkkkkdfsdsDkkfAenvgikFktPeefF 162
                 +Gmw el++ + + +++id  +sf+vGDaagr      ++d+s++D+k+A+n+gi+F+tPee+F
  CDO70582.1 182 PGMWYELERIFAQdGVHIDLANSFFVGDAAGR------PNDHSSTDRKLALNIGIPFYTPEEYF 239
                 **********99989*****************......*************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.75
       PNK3P 134 kkkkkdfs..dsDkkfAenvgikF 155
                 + ++ df   + D  fAe  +++F
  CDO70582.1 416 TGFRADFEepSVDEGFAEVRKVNF 439
                 445555552235777777777777 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   8.9e-15   2.7e-11       1     143 []     301     425 ..     301     425 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 8.9e-15
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpv 99 
                 +vl+vG p+ GKs + +++ ++ g+v++++dtl++r +                   ++ +  ++al++g++v++d+tn+++ +r+ +++la+      
  CDO70582.1 301 VVLFVGYPALGKSSFFRSHFEPAGYVHVNQDTLKTRDK-------------------CV-KATEQALKEGKSVVVDNTNRDKTTREHYVNLAK------ 373
                 89******************************988654...................45.5557899*************************9...... PP

      AAA_33 100 rivvvetdeetlkeRlakRaang........ddrsevpeealdrqkarferp 143
                 r++++    e++ +++  R +n          +r+ +p +al  ++a fe+p
  CDO70582.1 374 RCLYFVGTLELAWHNNLYRVFNLppakadseAKRTLLPYSALTGFRADFEEP 425
                 8999999999999999888876556655555677777778888888887776 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05     0.031       2      45 ..      91     145 ..      90     154 .. 0.83
   2 ?    0.9   0.0      0.16   4.8e+02      21      52 ..     341     373 ..     324     383 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                  EEESTTTSE...........ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HH CS
  Hydrolase_6   2 lfDidGvLw...........rgdkaipgaaealnalraagkpvvllTNnssksee 45 
                  +fD+dG+L+            ++   p +++ l+ l+++g+ +v++TN++ ++++
   CDO70582.1  91 AFDLDGCLIkssfpkkgappTFEWWRPVVPKKLKELHEQGYAIVIITNQALRTQS 145
                  69*******7777776666668888999999999999************999953 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
                  HHHHHHHHTT-EEEE.EE---SS-HHHHHHHHH CS
  Hydrolase_6  21 ealnalraagkpvvl.lTNnsskseeeyakkle 52 
                  +a ++  ++gk vv+  TN+ + ++e+y++  +
   CDO70582.1 341 KATEQALKEGKSVVVdNTNRDKTTREHYVNLAK 373
                  445555566666666479999999999988764 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.6   2.6e-05     0.076      52     117 ..     331     400 ..     300     429 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
                 GHHHHHHHHHHHHHHHHTT.SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHH....H CS
       KTI12  52 kekalRsslrsavkrdLskekvVIvDslnyikgfRYeLyciakaakttlcvvyvvapldvlvkwn....e 117
                 +  ++R++  +a +++L++ k V+vD++n  k  R    ++ak +   + ++ ++  ++  + +n    +
  CDO70582.1 331 DTLKTRDKCVKATEQALKEGKSVVVDNTNRDKTTREHYVNLAKRCLYFVGTLELAWHNNLYRVFNlppaK 400
                 45589**************************************998777777777777777776655541 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   4.3e+03     114     127 ..     123     136 ..     118     145 .. 0.61
   2 ?    9.4   0.0   0.00019      0.57      11      58 ..     294     337 ..     289     363 .. 0.77
   3 ?    2.7   0.0     0.022        66      86     117 ..     341     372 ..     336     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
  Zeta_toxin 114 aealkkaGYevevv 127
                  ++l+++GY + ++
  CDO70582.1 123 LKELHEQGYAIVII 136
                 45566666666554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00019
  Zeta_toxin  11 psqerPklillgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 p+ ++P ++l +G p+ GKs+  +   +      ++v++++D+l+++ 
  CDO70582.1 294 PAPSSPEVVLFVGYPALGKSSFFRSHFE----PAGYVHVNQDTLKTRD 337
                 56689***************98765544....569*********9975 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.022
  Zeta_toxin  86 kllqeaiengyniivegtlrspdvvkklaeal 117
                 k++++a+++g +++v+ t r+  + ++ ++ +
  CDO70582.1 341 KATEQALKEGKSVVVDNTNRDKTTREHYVNLA 372
                 6899**************99988877766555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.2e-05     0.096       2      41 ..     302     343 ..     301     371 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                 EEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrv 41 
                 v++vG+p  GKS+++++ ++    ++v++   +Trd   +  
  CDO70582.1 302 VLFVGYPALGKSSFFRSHFEPagYVHVNQDTLKTRDKCVKAT 343
                 789**************9996345777887788887655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3135.64
//
Query:       CDO70583.1  [L=393]
Description: hypothetical protein BN946_scf184636.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-17   62.8   0.0    3.6e-17   62.2   0.0    1.3  1  DAGK_cat  Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0     2e-21   3.6e-17       1     103 [.       2     114 ..       2     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2e-21
                 EEEEEE-TTCTTTTHHHHH.HHCHHHHHHCTC.EEEEEE--STTH.....HHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCT....HHCTTSEEEEE CS
    DAGK_cat   1 kllvivNpksGkgkgekll.rkvrelleeagv.elelieteepgd.....akelakeakeegvdlivvaGGDGtvsevlnglle....elatkpplgii 88 
                 ++lvi+Np sG +++e ++ ++v +ll+++gv   ++i te++g+     a+ l++++ + +   iv  +GDGt++e++n l +    +   ++ l+++
  CDO70583.1   2 PVLVIYNPVSGDRSAEAFFdEHVLPLLAQHGVtPDKVIATESSGHvgsivADYLLSTVHA-QPLSIVLGSGDGTLHELINELNNapssKPFPRIHLALV 99 
                 689*****************************54569999999**555544444555555.6799*******************988888888****** PP

                 E-SS--HHHHHCT-- CS
    DAGK_cat  89 PlGtgNdlaralgig 103
                 P+Gt+N+l  +l  +
  CDO70583.1 100 PCGTANALYSSLFPP 114
                 ********9999433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2995.65
//
Query:       CDO70584.1  [L=263]
Description: hypothetical protein BN946_scf184636.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-45  155.5   0.1    2.1e-45  154.5   0.1    1.5  1  ADK              Adenylate kinase
    2.1e-33  115.6   0.4    4.2e-33  114.6   0.1    1.6  2  AAA_17           AAA domain
    5.4e-08   33.4   0.0    8.9e-08   32.7   0.0    1.3  1  AAA_18           AAA domain
    2.4e-07   30.6   1.0     0.0023   17.6   0.4    2.1  2  Thymidylate_kin  Thymidylate kinase
    5.7e-05   23.3   0.1    0.00071   19.8   0.1    2.3  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.026   14.9   0.4       0.65   10.4   0.7    2.3  2  SPK              Domain of unknown function (DUF545)


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.1   7.2e-49   2.1e-45       1     150 [.      61     227 ..      61     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 7.2e-49
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH.HCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCH....GTTTE.......EEEESB-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx.......xxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaev.ksgtelGkeakevmdkgelvpdevvvklvkeeleke....dkkkg.......fllDGfPRtve 87 
                 +lG+PgaGKGtq+++lv+++g++hls+GdllRae+ ++g+e+G+ +++++ +g++vp e+++kl+++++ +e    ++++g       fl+DGfPR+++
  CDO70584.1  61 VLGGPGAGKGTQCANLVQDFGFCHLSAGDLLRAEQnREGSEYGELIRKYIREGQIVPMEITIKLLENAMGAElakpHTTEGwedgrgrFLIDGFPRKMD 159
                 79*******************************985789****************************9876542212222222223339********** PP

                 HHHHHHHHHHHHTSEESEEEEEE--HHHHHHHHHT.........GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  88 qaealeelleeekvkldlvleldvpeevlveRltg.........DneetvkkRletykkqtkplidyykkkg 150
                 qa +++e    + +  ++vl +   ee +++Rl++         Dnee+++kR+++yk+qt+p+i++y+k+g
  CDO70584.1 160 QALKFDE----DVCLSTMVLFFTTTEEEMLKRLLEraktsgredDNEESIRKRFRVYKEQTMPVIEHYSKQG 227
                 *******....99999*****************************************************997 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.1   1.4e-36   4.2e-33       1     136 []      62     206 ..      62     206 .. 0.78
   2 ?   -2.2   0.0       1.8   5.3e+03      72      90 ..     228     246 ..     212     257 .. 0.55

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.4e-36
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS...HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH...........HSSEEEEEE-SEEEET CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl...akardemrklpleekkelqkeaaekiaeea...........kkkgvlvdghprikeq 85 
                 lGgPG+GKgtqc++lv+++gf hlsaGdllr+e++r+g+   +  r+++r++++++ + + k++++++  e            +++ +l+dg+pr   +
  CDO70584.1  62 LGGPGAGKGTQCANLVQDFGFCHLSAGDLLRAEQNREGSeygELIRKYIREGQIVPMEITIKLLENAMGAELakphttegwedGRGRFLIDGFPRK--M 158
                 7************************************84334778999998777776666666666663332233466666657778*******94..3 PP

                 TEEEESSHHHHHHHH...SEEEEEE--HHHHHHHHHHH.TTST-TS-SHHHHH CS
      AAA_17  86 agfldglpkevleelkp.daiilleadpeeilerrlkd.rtrgrdddneesik 136
                 ++   +++++    ++  ++++++ + +ee+l+r+l++ +t+gr+ddneesi+
  CDO70584.1 159 DQ-ALKFDED----VCLsTMVLFFTTTEEEMLKRLLERaKTSGREDDNEESIR 206
                 44.3457765....555247777999999*********99***********97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
                 SEEEEEE-SEEEETTEEEE CS
      AAA_17  72 kgvlvdghprikeqagfld 90 
                 k + +d  ++i+e ++  +
  CDO70584.1 228 KVATIDATATIEEVHQKAK 246
                 3346666666665554433 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0     3e-11   8.9e-08       2     126 ..      60     204 ..      60     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3e-11
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe.....aldeskrldedkldklldaleenss........aleegknlvidghlael 86 
                 ++ G pG+GK t + +L +  gf +   +d+++ ++ +++ +        ++e +++ ++ + kll++ +++           ++  +  +idg++ ++
  CDO70584.1  60 FVLGGPGAGKGTQCANLVQDFGFcHLSAGDLLRAEQNREGSEYGelirkYIREGQIVPMEITIKLLENAMGAELakphttegWEDGRGRFLIDGFPRKM 158
                 58899**************999999999999999999999998899999**********************988***9999644444666********* PP

      AAA_18  87 eseaakdikk......vvLtaspeelleRlekRgyeeakikeneea 126
                  ++  +d          + t+ +ee+l+Rl +R +++ +  +nee+
  CDO70584.1 159 DQALKFDEDVclstmvLFFTTTEEEMLKRLLERAKTSGREDDNEES 204
                 99988887768999998999*******************8877764 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   5.9e-05      0.18       4      56 ..      64     119 ..      62     142 .. 0.77
   2 !   17.6   0.4   7.7e-07    0.0023     109     184 ..     163     244 ..     151     245 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.9e-05
                      STTSSHHHHHHHHHHHHHHTTE...EEEESSS..TTSHHHHHHHHHHHTCS---HHH CS
  Thymidylate_kin   4 lDGaGKttqaellkerlkeegik..vvltrep..ggteiGekirelllkeeeleeqt 56 
                        GaGK tq+++l++ +   +++   +l+ e+  +g+e+Ge+ir+++  e ++ ++ 
       CDO70584.1  64 GPGAGKGTQCANLVQDFGFCHLSagDLLRAEQnrEGSEYGELIRKYIR-EGQIVPME 119
                      569************987666665666776652269**********99.66665554 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 7.7e-07
                      HHGGGTTSE-SEEEEEESSHHHHHTSCCTTSS....TTTSHHHHHHHHHHHHHHHHHHHH...TTSTEEEEETTS-HHHHHHH CS
  Thymidylate_kin 109 slnedvllkPdltflldvdpevalkRlakrde....ldeeeeeqldflrkvrerylelak...ederiliidasksieevhee 184
                      +  edv     +++++ + +e+ lkRl +r++    +d++ee  ++ +r ++e+ + +++   +++++ +ida+  ieevh++
       CDO70584.1 163 KFDEDVC-LSTMVLFFTTTEEEMLKRLLERAKtsgrEDDNEESIRKRFRVYKEQTMPVIEhysKQGKVATIDATATIEEVHQK 244
                      5566666.677999*************9999998875566666666666666666655544226889**************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   2.4e-07   0.00071       1     128 [.      58     204 ..      58     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.4e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelar.kalsagrnvildatnls...............rr 83 
                 ++++ G pG+GK t   +l++  g+++ls  +l+r+  +++     +++r   r  qi+   ++ k l+ + ++ l  + ++               +r
  CDO70584.1  58 VFFVLGGPGAGKGTQCANLVQDFGFCHLSAGDLLRAEQNREGSEYGELIRKYIREGQIVPMEITiKLLENAMGAELAKPHTTegwedgrgrflidgfPR 156
                 67899***************************9999998666655544443333333333333303345555566655544433333333333345577 PP

      AAA_33  84 erarflklarrlgvpvrivvvetdeetlkeRlakRaang...ddrsev 128
                 ++++ lk+ ++      +++++t ee++ +Rl +Ra+++   dd  e 
  CDO70584.1 157 KMDQALKFDEDVCLSTMVLFFTTTEEEMLKRLLERAKTSgreDDNEES 204
                 778888888888888999******************998443333333 PP

>> SPK  Domain of unknown function (DUF545)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.11   3.4e+02      57      70 ..      52      65 ..      41      66 .. 0.86
   2 ?   10.4   0.7   0.00022      0.65      12      63 ..     179     231 ..     176     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
         SPK 57 letkvrllFalsap 70
                +++kv+++F+l++p
  CDO70584.1 52 DHEKVKVFFVLGGP 65
                689********976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00022
         SPK  12 atkplslkelckeFkeksgskesestlarrfrqlla.kihkleeydletkvrl 63 
                 +t+ + lk+l+++ k++ + + +e+++++rfr +++ ++  +e+y+ + kv  
  CDO70584.1 179 TTEEEMLKRLLERAKTSGREDDNEESIRKRFRVYKEqTMPVIEHYSKQGKVAT 231
                 688899999999999999999999***********************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      821  (0.0457917); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1723.22
//
Query:       CDO70585.1  [L=375]
Description: hypothetical protein BN946_scf184636.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   16.3   2.4       0.16   12.9   0.2    3.2  3  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.036   6.4e+02       9      20 ..      50      63 ..      42      87 .. 0.66
   2 ?   12.9   0.2   8.7e-06      0.16       8      38 .]     108     144 ..     100     144 .. 0.88
   3 ?   -3.7   0.0         1   1.8e+04      13      21 ..     178     186 ..     176     196 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.036
                SS.SS.EEEEEEET CS
        WD40  9 GH.ss.vtslafsp 20
                 H +s +t+la+s+
  CDO70585.1 50 FHvGSrITALAWSS 63
                587445****7543 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8.7e-06
                 ESS.SSEEEEE.....EETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtsla.....fspdgawlasGsdDgtvriWd 38 
                 +GH + v+++        ++++++a+ sdD+ +++Wd
  CDO70585.1 108 SGHhGKVNDMTfcggrSEDSSRYVATVSDDKMLMVWD 144
                 58966699999889999999999***9*********9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1
                 EEEEEEETT CS
        WD40  13 vtslafspd 21 
                  ts++ +p+
  CDO70585.1 178 LTSVDAHPS 186
                 456653333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2482.76
//
Query:       CDO70586.1  [L=751]
Description: hypothetical protein BN946_scf184636.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-09   36.8   1.4      5e-09   35.6   1.4    1.6  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.4   2.8e-13     5e-09       2     180 ..     158     313 ..     153     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 2.8e-13
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   d+ff  ++p +++++    +p +        +  sp+l++ail+  + f   +       l +          ++  ++   f+  ++s++++q+L 
    CDO70586.1 158 DMFFLRLNPFINLFDPSLHSPAY-------IRRLSPFLFTAILMACCKFFCANLYPAVRRLAE----------EWCVFT---FQEGTESVETVQALA 234
                   45556666555444443333344.......556688888888888888877777766555555..........898999...*************** PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsq 180
                   ++ ++    ++    ++++g+a+r+a+ l+L++   + +++   +l + e+  r R+++  F+ D+ +++++G + +l++++
    CDO70586.1 235 CMTYWKEPADR--RTWMYIGMACRMAVNLRLNKYVGRRQPH-ETTLAFLERRNRERTYLVLFVHDRSLSMQTGKQWMLHEDE 313
                   **********8..67*****************888888865.66777777999*********************99878775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5010.33
//
Query:       CDO70587.1  [L=82]
Description: hypothetical protein BN946_scf184636.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.7   0.1    2.4e-17   63.4   0.1    1.0  1  Uricase   Uricase


Domain annotation for each model (and alignments):
>> Uricase  Uricase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   1.3e-21   2.4e-17       2      64 ..      19      77 ..      18      81 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.3e-21
                EEEEEEEEEEEE.EETTCBEBECEEEECCEEEEEESSEEECCHHH-STTT---CCHHHHHHHHH CS
     Uricase  2 kyGkddvrvlkv.rkstgsafhgfvedevttllegkdrilstyfagdnsdvvasdSvkntvYkm 64
                +yGkd+vrv++v r+    a+h++ve++vt l+eg d i+ +y+++dns vva+dS+kn+ Y  
  CDO70587.1 19 RYGKDKVRVFRVvRD---GAWHSIVEYNVTALVEG-D-IEVSYTEADNSVVVATDSIKNITYCA 77
                8***********999...689**************.*.***********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 577.15
//
Query:       CDO70588.1  [L=294]
Description: hypothetical protein BN946_scf184656.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2025.06
//
Query:       CDO70589.1  [L=323]
Description: hypothetical protein BN946_scf184656.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-42  143.9   0.0    9.1e-42  143.2   0.0    1.2  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   5.1e-46   9.1e-42       2     290 ..      19     301 ..      18     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 5.1e-46
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHH.HHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseel.lGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrL 97 
                   +g+Gtw+ ++      ++a e++++ l+ G++++D+A  Yg+ +   + l +a+k+  + re+v +++K+      ++  ++ke++ e++ +sl+  
    CDO70589.1  19 IGFGTWKHNG------AKATEAVHTGLSVGYRLIDCACDYGNEKECGEgLKRAIKDGVVAREDVWVVSKL------WNTFHRKEHVKEAVMRSLSDW 103
                   9*****8887......7***********************6555555557778888**************......********************* PP

                   T-S-EEEEEE-S--TTS-.........................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HH CS
  Aldo_ket_red  98 gtdyvDllllHrpdpslp........................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllrel 170
                   g++y+D++++H p +  +                         + e+++aleelv+eG ir++GvSn   + l  ++k + ++++++q+e +++   
    CDO70589.1 104 GVSYFDIYYVHFPISLAYvpfdtryppgwyfdgksqvkhdpvPLRETWEALEELVDEGYIRHLGVSNMCSALLMDLLKYARHRPSVLQIEIHPY--N 198
                   *************9988889******************************************************9*9*****************..9 PP

                   HHTTHHHHHHHTT-EEEEBSTTGG.GTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SS CS
  Aldo_ket_red 171 eeegllelckkkgvpliaysplgg.Glltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasn 266
                   ++   +++++++g+++ ays +g  G+++ k  ++ +++     +           l + + +  +a  h v++aq++lr+a+  +++  vip++ +
    CDO70589.1 199 AQPRAVQYAHEQGIAVTAYSSFGPlGFRELKTPKSLRTQ-----P-----------LFTHPVVTTIALAHQVHPAQVVLRWAT--QRGLAVIPKSDT 277
                   99999******************8455554444444444.....3...........357799*********************..9*********** PP

                   HHHHHHHHGGGG----HHHHHHHH CS
  Aldo_ket_red 267 ieqlednldalelklseeevaeld 290
                    +q+e+nl + ++kl+e+e + + 
    CDO70589.1 278 EQQMEENLLSANIKLTEQETSVIT 301
                   ******************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2352.03
//
Query:       CDO70590.1  [L=756]
Description: hypothetical protein BN946_scf184656.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-21   72.8   2.5    2.3e-05   24.0   0.5    5.1  4  TPR_1     Tetratricopeptide repeat
    2.2e-16   58.6  12.5     0.0018   18.3   0.6    6.4  7  TPR_2     Tetratricopeptide repeat
    2.5e-13   49.1   1.1      0.017   15.3   0.1    5.7  6  TPR_8     Tetratricopeptide repeat
    9.5e-12   44.4   6.5     0.0015   18.2   0.6    5.5  6  TPR_11    TPR repeat
    3.4e-11   43.6  11.8    2.4e-05   24.9   0.3    5.3  4  TPR_16    Tetratricopeptide repeat
    3.9e-11   42.8  21.1     0.0028   18.4   0.1    7.0  6  TPR_14    Tetratricopeptide repeat
    6.9e-11   42.5   9.3    8.5e-06   26.2   0.4    4.7  4  TPR_19    Tetratricopeptide repeat
    1.4e-10   40.8  10.4      0.052   13.9   0.0    6.0  5  TPR_17    Tetratricopeptide repeat
    7.2e-08   32.6  13.1    5.9e-05   23.3   0.6    4.8  5  TPR_12    Tetratricopeptide repeat
    1.2e-07   31.8   4.2      0.001   19.2   0.4    3.0  2  TPR_9     Tetratricopeptide repeat
    2.4e-05   24.6   5.7       0.65   10.4   0.1    4.9  5  TPR_20    Tetratricopeptide repeat
    3.2e-05   23.6   8.1        2.4    8.4   0.1    5.9  5  TPR_7     Tetratricopeptide repeat
    0.00018   21.6   2.5      0.023   14.9   0.5    2.9  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.024   15.2   1.5         35    5.3   0.0    4.5  4  TPR_6     Tetratricopeptide repeat
       0.12   12.4   2.1         13    6.0   0.1    4.2  5  MIT       MIT (microtubule interacting and transport) domain
       0.25   11.3  15.5          1    9.3   0.3    5.0  5  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.8e-06    0.0054       3      34 .]     469     500 ..     467     500 .. 0.93
   2 !   15.1   0.0   1.4e-05     0.015       4      34 .]     581     611 ..     578     611 .. 0.89
   3 !   24.0   0.5   2.1e-08   2.3e-05       3      33 ..     614     644 ..     612     645 .. 0.94
   4 !   13.0   0.0   6.1e-05     0.069       2      30 ..     647     675 ..     646     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.8e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  ++ lG+  +++++  +A+++ ++ALel+P++
  CDO70590.1 469 RWFELGVKQQENEREHQAVQALRRALELDPTH 500
                 599***************************96 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                    l++++  +++y +A +++  AL ++P++
  CDO70590.1 581 QIALAVLLNTNEEYTKARDCFTTALAVRPDD 611
                 567999***********************96 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 2.1e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  +++ G+++ + g ++eAl+yy  ALelnP 
  CDO70590.1 614 LYNRVGATLANSGHPEEALQYYYTALELNPA 644
                 69****************************5 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALel 30 
                 +a +nlG  + +l +ydeA ++   AL l
  CDO70590.1 647 RARFNLGISCINLRRYDEAAQHILDALVL 675
                 7899*****************98888876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.6     4e+03      23      34 .]     455     466 ..     451     466 .. 0.84
   2 !   15.8   0.1   9.8e-06     0.011       2      34 .]     468     500 ..     467     500 .. 0.94
   3 ?   -2.2   0.0       5.6   6.3e+03       4      23 ..     504     523 ..     503     526 .. 0.80
   4 ?    1.1   0.1      0.51   5.7e+02      13      27 ..     530     544 ..     529     545 .. 0.90
   5 !    9.9   0.0   0.00075      0.84      13      34 .]     590     611 ..     578     611 .. 0.80
   6 !   18.3   0.6   1.6e-06    0.0018       3      33 ..     614     644 ..     612     645 .. 0.94
   7 !   16.2   0.0   7.4e-06    0.0083       3      31 ..     648     676 ..     646     679 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.6
       TPR_2  23 afekAleldPnn 34 
                  +e+A++ dP+n
  CDO70590.1 455 ELEAAVQRDPTN 466
                 5899******97 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.8e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                   +++lG    ++ +  +A++a+++AleldP++
  CDO70590.1 468 ARWFELGVKQQENEREHQAVQALRRALELDPTH 500
                 569****************************97 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.6
       TPR_2   4 lynlGlayyklgdyeeAlea 23 
                 + +l+ ++ + gd   A  a
  CDO70590.1 504 WLALAVSHTNEGDRVNAYTA 523
                 8899****999998877666 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.51
       TPR_2  13 klgdyeeAleafekA 27 
                 ++++y+ A++ f++A
  CDO70590.1 530 RNDRYASAVAQFREA 544
                 5789**********9 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00075
       TPR_2  13 klgdyeeAleafekAleldPnn 34 
                  + +y +A+++f  Al+  P++
  CDO70590.1 590 TNEEYTKARDCFTTALAVRPDD 611
                 5789**************9986 PP

  == domain 6  score: 18.3 bits;  conditional E-value: 1.6e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 ++++ G  ++++g++eeAl+++  Alel+P 
  CDO70590.1 614 LYNRVGATLANSGHPEEALQYYYTALELNPA 644
                 799***************************6 PP

  == domain 7  score: 16.2 bits;  conditional E-value: 7.4e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a +nlG ++++l +y+eA+++   Al l 
  CDO70590.1 648 ARFNLGISCINLRRYDEAAQHILDALVLQ 676
                 779**********************9886 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00019      0.21       4      34 .]     470     500 ..     467     500 .. 0.86
   2 ?   -0.9   0.0       2.4   2.6e+03       2      25 ..     502     525 ..     501     534 .. 0.81
   3 ?   -2.3   0.0       6.8   7.6e+03      15      27 ..     532     544 ..     528     544 .. 0.87
   4 !    7.8   0.0    0.0039       4.4       2      34 .]     579     611 ..     578     611 .. 0.91
   5 !   15.3   0.1   1.6e-05     0.017       4      33 ..     615     644 ..     614     645 .. 0.94
   6 !    7.3   0.0    0.0054       6.1       2      28 ..     647     673 ..     646     678 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++ lg   ++ ++ ++A++++++aleldp++
  CDO70590.1 470 WFELGVKQQENEREHQAVQALRRALELDPTH 500
                 77777777889999***************86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.4
                 CHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyye 25 
                 ++++ l+  + + gd  +A  +++
  CDO70590.1 502 PSWLALAVSHTNEGDRVNAYTAIR 525
                 79************9877776666 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.8
                 T-HHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyeka 27 
                  +y +A++ +++a
  CDO70590.1 532 DRYASAVAQFREA 544
                 699*******997 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0039
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++   l+ ++ + ++y +A  ++  al  +pd+
  CDO70590.1 579 DIQIALAVLLNTNEEYTKARDCFTTALAVRPDD 611
                 5677899**********************9986 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 y++ g ++ + g  eeA +yy  alel+p+
  CDO70590.1 615 YNRVGATLANSGHPEEALQYYYTALELNPA 644
                 899999***********************7 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0054
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +a +nlg  +++l +y+eA + +  al
  CDO70590.1 647 RARFNLGISCINLRRYDEAAQHILDAL 673
                 899****************99887776 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   1.3e+03      19      31 ..     418     430 ..     417     431 .. 0.87
   2 ?    5.6   0.0     0.011        13      12      36 ..     451     475 ..     449     480 .. 0.87
   3 !    8.8   0.0    0.0011       1.3      12      27 ..     485     500 ..     484     515 .. 0.80
   4 ?   -3.5   0.1       7.9   8.8e+03       9      20 ..     533     544 ..     533     544 .. 0.88
   5 !   10.0   0.0   0.00048      0.54       9      42 .]     593     626 ..     588     626 .. 0.92
   6 !   18.2   0.6   1.3e-06    0.0015      11      35 ..     629     653 ..     625     655 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
      TPR_11  19 kAlkldPdnaeay 31 
                 +A ++ P+n+ ++
  CDO70590.1 418 TAYQFQPNNPYLH 430
                 58899*****988 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
      TPR_11  12 eAieaYkkAlkldPdnaeayynLGl 36 
                 e++ ++++A++ dP+na  +++LG+
  CDO70590.1 451 ESVLELEAAVQRDPTNAARWFELGV 475
                 6778899*****************6 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0011
      TPR_11  12 eAieaYkkAlkldPdn 27 
                 +A++a+++Al+ldP+ 
  CDO70590.1 485 QAVQALRRALELDPTH 500
                 7*************85 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 7.9
      TPR_11   9 kyeeAieaYkkA 20 
                 +y  A++++++A
  CDO70590.1 533 RYASAVAQFREA 544
                 6899****9998 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00048
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +y++A  ++ +Al+ +Pd+  +y+  G+++++ G
  CDO70590.1 593 EYTKARDCFTTALAVRPDDWLLYNRVGATLANSG 626
                 8**************************9998766 PP

  == domain 6  score: 18.2 bits;  conditional E-value: 1.3e-06
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLG 35 
                 eeA++ Y +Al+l+P + +a +nLG
  CDO70590.1 629 EEALQYYYTALELNPAYIRARFNLG 653
                 9************************ PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.4   6.2e-05     0.069       9      63 ..     479     531 ..     471     536 .. 0.87
   2 ?    1.9   0.1      0.32   3.6e+02      46      66 ..     530     550 ..     528     552 .. 0.71
   3 !   24.9   0.3   2.2e-08   2.4e-05       9      66 ..     590     644 ..     582     646 .. 0.91
   4 !   22.8   0.4   9.5e-08   0.00011       7      62 ..     622     674 ..     621     680 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-05
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal.ra 63 
                 ++ +  +A+ al++al++d   P +  ++l+l++++   g+   A  ++r+++ r+
  CDO70590.1 479 ENEREHQAVQALRRALELD---PTHLPSWLALAVSHTNEGDRVNAYTAIREWVsRN 531
                 6677789************...*******************999999988887655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.32
      TPR_16  46 rqgrlaeAaalyraalraapd 66 
                 r+ r+a A+a++r+a ++ p+
  CDO70590.1 530 RNDRYASAVAQFREAHPEPPN 550
                 566888888888888666665 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 2.2e-08
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  + +y++A+  +++al+ +   Pd++  ++  g  ++  g  +eA+++y  al+  p 
  CDO70590.1 590 TNEEYTKARDCFTTALAVR---PDDWLLYNRVGATLANSGHPEEALQYYYTALELNPA 644
                 5788***************...*******************************99886 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 9.5e-08
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 ++++g++++A+ ++ +al+++   P+  +A+++lg ++  + r++eAa+ ++ al 
  CDO70590.1 622 LANSGHPEEALQYYYTALELN---PAYIRARFNLGISCINLRRYDEAAQHILDALV 674
                 6789*****************...************************99988874 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.04        44      23      42 ..     455     474 ..     448     475 .. 0.88
   2 !   12.9   0.5   0.00014      0.16      17      42 ..     483     508 ..     477     510 .. 0.88
   3 ?    1.8   0.1       0.5   5.6e+02      13      36 ..     530     550 ..     518     554 .. 0.79
   4 !   12.6   0.0   0.00018       0.2       4      38 ..     581     615 ..     578     621 .. 0.89
   5 !   18.4   0.1   2.5e-06    0.0028       8      42 ..     619     653 ..     614     655 .. 0.91
   6 ?    5.3   0.1     0.037        42       3      34 ..     648     679 ..     646     687 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.04
      TPR_14  23 llrralalaPddaeawllla 42 
                  l++a++++P++a+ w++l+
  CDO70590.1 455 ELEAAVQRDPTNAARWFELG 474
                 69***************997 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00014
      TPR_14  17 pdeAiallrralalaPddaeawllla 42 
                   +A+++lrral+l+P+++  wl+la
  CDO70590.1 483 EHQAVQALRRALELDPTHLPSWLALA 508
                 568*********************99 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.5
      TPR_14  13 alGdpdeAiallrralalaPddae 36 
                 ++++++ A+a +r+a   +P+++ 
  CDO70590.1 530 RNDRYASAVAQFREA---HPEPPN 550
                 78899*********9...776654 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00018
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeaw 38 
                 + ala +l +++++ +A++++  ala  Pdd+ ++
  CDO70590.1 581 QIALAVLLNTNEEYTKARDCFTTALAVRPDDWLLY 615
                 6789999*************************987 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 2.5e-06
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 ++ l+++G p+eA++++  al+l+P+  +a++ l+
  CDO70590.1 619 GATLANSGHPEEALQYYYTALELNPAYIRARFNLG 653
                 7789***************************9997 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.037
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 a+  l+  + +l+++deA+++  +al l+ +d
  CDO70590.1 648 ARFNLGISCINLRRYDEAAQHILDALVLQDSD 679
                 667789999***************99876554 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3    0.0021       2.4      14      63 ..     456     506 ..     455     508 .. 0.71
   2 !    9.1   0.3    0.0016       1.8       9      40 ..     485     516 ..     478     541 .. 0.80
   3 !    8.7   0.3    0.0022       2.5      23      58 ..     573     611 ..     529     620 .. 0.88
   4 !   26.2   0.4   7.6e-09   8.5e-06       4      57 ..     625     679 ..     622     689 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0021
      TPR_19  14 leqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryas 63 
                 le+a q dp na+ +  L   + ++ +  +A ++L +++e dp + + + +
  CDO70590.1 456 LEAAVQRDPTNAARWFELGVKQQENEREHQAVQALRRALELDPTHlPSWLA 506
                 677778888888888888888888888888888888888877776555544 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0016
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgq 40 
                 +A+++l++al+ dp ++  +l+LA  + + g+
  CDO70590.1 485 QAVQALRRALELDPTHLPSWLALAVSHTNEGD 516
                 8**********************987776666 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0022
      TPR_19  23 k...naearllLAeallalgqldeAealLdalpeedpdd 58 
                 +   +a+++++LA +l  + ++++A+++  ++++  pdd
  CDO70590.1 573 GgeiDADIQIALAVLLNTNEEYTKARDCFTTALAVRPDD 611
                 445599****************************99996 PP

  == domain 4  score: 26.2 bits;  conditional E-value: 7.6e-09
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeA.ealLdalpeedpd 57 
                 +g ++eAl+++  al+ +p + +ar +L + +++l ++deA + +Ldal ++d d
  CDO70590.1 625 SGHPEEALQYYYTALELNPAYIRARFNLGISCINLRRYDEAaQHILDALVLQDSD 679
                 6899***********************************9725699999999988 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0042       4.8       2      34 .]     456     488 ..     455     488 .. 0.90
   2 !   11.3   0.0   0.00032      0.36       2      28 ..     490     516 ..     489     523 .. 0.88
   3 ?   -0.3   0.0       1.6   1.8e+03      13      33 ..     578     598 ..     577     599 .. 0.85
   4 !   13.9   0.0   4.6e-05     0.052       1      34 []     600     633 ..     600     633 .. 0.97
   5 !    9.0   0.5    0.0018         2       2      32 ..     635     665 ..     634     667 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++ a+++dP+na  +++L++ + +n +  +A+q
  CDO70590.1 456 LEAAVQRDPTNAARWFELGVKQQENEREHQAVQ 488
                 5899****************9999999888876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00032
      TPR_17   2 ylkaleldPnnadaynnLAelllknGd 28 
                 +++aleldP++ +++  LA+ + + Gd
  CDO70590.1 490 LRRALELDPTHLPSWLALAVSHTNEGD 516
                 579****************98887776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.6
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 ad    LA+ll  n ++ +Ar
  CDO70590.1 578 ADIQIALAVLLNTNEEYTKAR 598
                 677778***********9998 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 4.6e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +++ al+  P+++ +yn  + +l++ G +++A+q
  CDO70590.1 600 CFTTALAVRPDDWLLYNRVGATLANSGHPEEALQ 633
                 7999****************************97 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0018
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y  alel+P +  a +nL+    ++ ++++A
  CDO70590.1 635 YYTALELNPAYIRARFNLGISCINLRRYDEA 665
                 889*****************99999999998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4    0.0042       4.7      24      75 ..     448     497 ..     447     499 .. 0.89
   2 ?   -0.0   0.0      0.97   1.1e+03      54      71 ..     527     544 ..     506     546 .. 0.76
   3 !   11.6   0.0   0.00024      0.26      43      75 ..     576     608 ..     559     610 .. 0.62
   4 !   23.3   0.6   5.3e-08   5.9e-05       3      74 ..     578     641 ..     576     644 .. 0.91
   5 !   17.1   1.3   4.5e-06    0.0051       5      72 ..     614     673 ..     611     676 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +l+e +le+  ++     p  a+  + Lg  +++ +r  +A+++l++al+++
  CDO70590.1 448 TLYESVLELEAAV--QRDPTNAARWFELGVKQQENEREHQAVQALRRALELD 497
                 6899999999999..66777899999************************86 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.97
      TPR_12  54 lyralgryeeAlelleea 71 
                 + ++ +ry+ A++ ++ea
  CDO70590.1 527 WVSRNDRYASAVAQFREA 544
                 567788999999999998 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00024
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleealaia 75 
                   a ++++L+ l+   ++y +A++ ++ ala++
  CDO70590.1 576 IDADIQIALAVLLNTNEEYTKARDCFTTALAVR 608
                 566667777777777777777777777777665 PP

  == domain 4  score: 23.3 bits;  conditional E-value: 5.3e-08
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a ++  la++l+  ++y++A++++ +al+++     pd  ++   ++  g ++  +g++eeAl+++  al++
  CDO70590.1 578 ADIQIALAVLLNTNEEYTKARDCFTTALAVR-----PDD-WL--LYNRVGATLANSGHPEEALQYYYTALEL 641
                 567889*************************.....766.55..8*************************98 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 4.5e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 ++n+++a+l+  g  +eAl+++ +ale+      p   +++++++nLg+ +  l ry+eA ++  +al
  CDO70590.1 614 LYNRVGATLANSGHPEEALQYYYTALELN-----P---AYIRARFNLGISCINLRRYDEAAQHILDAL 673
                 4667*********************9999.....6...58***********9999*****99876665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   8.7e-05     0.098      19      61 ..     457     499 ..     450     515 .. 0.90
   2 !   19.2   0.4   9.2e-07     0.001       7      62 ..     590     645 ..     584     680 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.7e-05
       TPR_9  19 erllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 e  ++ +P  +  +++ G+ +++ ++ ++A+++L ++l+l+p 
  CDO70590.1 457 EAAVQRDPTNAARWFELGVKQQENEREHQAVQALRRALELDPT 499
                 5566779**********************************94 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 9.2e-07
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                  +e++ +a  +    l++ Pdd+ ++   G  la +G++++Al+   ++l+l+p+ 
  CDO70590.1 590 TNEEYTKARDCFTTALAVRPDDWLLYNRVGATLANSGHPEEALQYYYTALELNPAY 645
                 6789999**********************************************964 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.5     0.001       1.1       8      48 ..     453     493 ..     450     495 .. 0.91
   2 !   10.4   0.1   0.00058      0.65       4      57 ..     483     536 ..     480     542 .. 0.91
   3 ?    2.3   0.1      0.19   2.2e+02      21      47 ..     577     603 ..     569     612 .. 0.85
   4 ?    0.6   0.0      0.63   7.1e+02      13      43 ..     603     633 ..     599     640 .. 0.88
   5 ?    6.4   0.1      0.01        12      12      50 ..     636     674 ..     627     687 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.001
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLlei 48 
                 + eleaa++ +p++ +  ++l  ++ +++r+ +A+++L + 
  CDO70590.1 453 VLELEAAVQRDPTNAARWFELGVKQQENEREHQAVQALRRA 493
                 569*********************************99665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00058
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkwed 57 
                 + + +++l++al+ +p+ l   l+lA     +g++  A +++ e+++r+  ++ 
  CDO70590.1 483 EHQAVQALRRALELDPTHLPSWLALAVSHTNEGDRVNAYTAIREWVSRNDRYAS 536
                 56789*******************************************998865 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.19
      TPR_20  21 dldarldlAlallaagryeeAleqLle 47 
                 d d++++lA +l+ +++y +A + + +
  CDO70590.1 577 DADIQIALAVLLNTNEEYTKARDCFTT 603
                 899*****************9876655 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.63
      TPR_20  13 aalaanpddldarldlAlallaagryeeAle 43 
                 +ala +pdd  +   +   l+  g+ eeAl+
  CDO70590.1 603 TALAVRPDDWLLYNRVGATLANSGHPEEALQ 633
                 689999***********************97 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.01
      TPR_20  12 eaalaanpddldarldlAlallaagryeeAleqLleilk 50 
                  +al+ np+ + ar++l    +   ry+eA++++l+ l 
  CDO70590.1 636 YTALELNPAYIRARFNLGISCINLRRYDEAAQHILDALV 674
                 578899*****************************9874 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.83   9.3e+02      16      32 ..     484     498 ..     447     501 .. 0.69
   2 ?    4.3   0.0     0.044        50       1      20 [.     503     522 ..     503     533 .. 0.86
   3 ?    5.3   0.0      0.02        23       4      31 ..     583     610 ..     582     611 .. 0.79
   4 ?    4.7   0.1     0.033        37       2      28 ..     615     641 ..     614     644 .. 0.83
   5 !    8.4   0.1    0.0022       2.4       3      31 ..     650     678 ..     648     682 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.83
       TPR_7  16 eeAielyeqsLaltkdp 32 
                  +A++ +++  al+ dp
  CDO70590.1 484 HQAVQALRR--ALELDP 498
                 467777777..555555 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.044
       TPR_7   1 aLlnLarlysrlGdyeeAie 20 
                 ++l+La+ + ++Gd+ +A +
  CDO70590.1 503 SWLALAVSHTNEGDRVNAYT 522
                 689************99976 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.02
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkd 31 
                 +La+l     +y +A ++++ +La++ d
  CDO70590.1 583 ALAVLLNTNEEYTKARDCFTTALAVRPD 610
                 57777777889**********7776655 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.033
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 +++ + +  + G+ eeA+++y  +L+l
  CDO70590.1 615 YNRVGATLANSGHPEEALQYYYTALEL 641
                 677889999************886655 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0022
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +nL+  + +l++y+eA+++   +L+l ++
  CDO70590.1 650 FNLGISCINLRRYDEAAQHILDALVLQDS 678
                 69****************99996666555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.015        17      35      66 ..     479     511 ..     447     545 .. 0.59
   2 !   14.9   0.5     2e-05     0.023      22      80 ..     608     670 ..     582     672 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.015
                 HTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHH CS
      ANAPC3  35 lngqykrAyellrka.klnskslgcrylfAqcl 66 
                 +n++ ++A + lr+a +l++++l +++ +A + 
  CDO70590.1 479 ENEREHQAVQALRRAlELDPTHLPSWLALAVSH 511
                 555555566666666566666555555555443 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2e-05
                 -HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  22 spedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +p+d +l+   + +l ++g  ++A++++ +a +ln+  +++r+ ++ +++ L +y+eA +++ 
  CDO70590.1 608 RPDDWLLYnrvGATLANSGHPEEALQYYYTAlELNPAYIRARFNLGISCINLRRYDEAAQHIL 670
                 67777777777888999******************************************9986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.088        98      13      32 ..     481     499 ..     467     500 .. 0.77
   2 ?    0.2   0.0       1.4   1.5e+03      14      32 ..     592     610 ..     581     611 .. 0.78
   3 ?   -0.2   0.0       1.8     2e+03      13      31 ..     625     643 ..     614     644 .. 0.76
   4 ?    5.3   0.0     0.031        35       2      30 ..     648     677 ..     647     680 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHHHHHHH-TT CS
       TPR_6  13 lgdtdkAlealerlikeYPd 32 
                   +  +A++al+r ++  P+
  CDO70590.1 481 E-REHQAVQALRRALELDPT 499
                 3.777**********99886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHH-TT CS
       TPR_6  14 gdtdkAlealerlikeYPd 32 
                  +++kA++ +   +   Pd
  CDO70590.1 592 EEYTKARDCFTTALAVRPD 610
                 3899******999988887 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHH-T CS
       TPR_6  13 lgdtdkAlealerlikeYP 31 
                  g +++Al+++   ++  P
  CDO70590.1 625 SGHPEEALQYYYTALELNP 643
                 3699*****9988877666 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHHHHHHHHH.HHHHHHHH- CS
       TPR_6   2 AlyklalsyrklgdtdkAle.alerlikeY 30 
                 A ++l+ s ++l ++d+A + +l+ l+ + 
  CDO70590.1 648 ARFNLGISCINLRRYDEAAQhILDALVLQD 677
                 89*********99****9998888887665 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1         2   2.3e+03      29      50 ..     466     488 ..     465     497 .. 0.57
   2 ?   -1.3   0.0         2   2.3e+03      26      57 ..     533     565 ..     532     568 .. 0.85
   3 ?    1.3   0.0      0.33   3.7e+02      10      31 ..     584     605 ..     580     607 .. 0.85
   4 ?    6.0   0.1     0.011        13      15      33 ..     623     641 ..     619     644 .. 0.89
   5 ?   -1.2   0.0         2   2.3e+03      24      40 ..     659     676 ..     659     689 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2
         MIT  29 ealelLlqalke.kneerrellr 50 
                 +a + + +++k+ +ne+  ++++
  CDO70590.1 466 NAARWFELGVKQqENEREHQAVQ 488
                 67778888888435544444333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
         MIT  26 lYkealelLlqalke.kneerrellrekieeYl 57 
                  Y +a+  + +a  e  n+++ e+l + +++ +
  CDO70590.1 533 RYASAVAQFREAHPEpPNATQGEKLTNLMHCLM 565
                 6999*******9999988899999988888777 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.33
         MIT  10 kAveeDnagnyeeAlelYkeal 31 
                  Av +  +++y +A +++++al
  CDO70590.1 584 LAVLLNTNEEYTKARDCFTTAL 605
                 6899999999999999999998 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.011
         MIT  15 DnagnyeeAlelYkealel 33 
                  n+g+ eeAl++Y +alel
  CDO70590.1 623 ANSGHPEEALQYYYTALEL 641
                 588999***********96 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 2
         MIT  24 lelYkealelLlqalk.e 40 
                 l+ Y ea +++l al  +
  CDO70590.1 659 LRRYDEAAQHILDALVlQ 676
                 578********9999844 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.36     4e+02      24      39 ..     483     497 ..     469     501 .. 0.72
   2 ?   -2.2   0.1       3.8   4.3e+03      15      28 ..     531     544 ..     529     545 .. 0.85
   3 ?    3.3   0.1     0.073        81       2      32 ..     578     608 ..     578     608 .. 0.91
   4 ?    9.3   0.3    0.0009         1       5      31 ..     615     641 ..     614     642 .. 0.94
   5 ?    5.1   0.1     0.019        22       7      29 ..     651     673 ..     648     676 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.36
      TPR_10  24 lleealairrrllGpd 39 
                   ++a+++ rr+l+ d
  CDO70590.1 483 E-HQAVQALRRALELD 497
                 4.78888888888744 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.8
      TPR_10  15 rgrydeAealleea 28 
                   ry+ A+a ++ea
  CDO70590.1 531 NDRYASAVAQFREA 544
                 5799*******998 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.073
      TPR_10   2 AsslnNLanalrqrgrydeAealleealair 32 
                 A ++  La++l    +y++A++ +  ala+r
  CDO70590.1 578 ADIQIALAVLLNTNEEYTKARDCFTTALAVR 608
                 667889*********************9986 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0009
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 +n  +++l + g  +eA++++  al++
  CDO70590.1 615 YNRVGATLANSGHPEEALQYYYTALEL 641
                 7999********************985 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.019
      TPR_10   7 NLanalrqrgrydeAealleeal 29 
                 NL++   +++rydeA ++  +al
  CDO70590.1 651 NLGISCINLRRYDEAAQHILDAL 673
                 9***************9988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.50
# Mc/sec: 4536.05
//
Query:       CDO70591.1  [L=379]
Description: hypothetical protein BN946_scf184656.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-05   24.4   0.2    4.4e-05   23.3   0.2    1.7  1  F-box-like  F-box-like
     0.0012   18.7   0.4     0.0053   16.6   0.4    2.1  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   4.9e-09   4.4e-05       2      42 ..       8      48 ..       7      54 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.9e-09
  F-box-like  2 srLPdEiLlqIFsyL..ppsdLlrlalVCrrWrrvaldtplLW 42
                s+LP E+  +++++L  ++++L+++++VC+ W+  a+ +  L+
  CDO70591.1  8 SDLPIEVVEHVLDQLrgDAKTLAACCRVCSAWYPRARYD--LY 48
                58***********9955577*************877544..66 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   5.9e-07    0.0053       4      34 ..       8      40 ..       6      41 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.9e-07
                HHS-HHHHHHHHHTS..-HHHHHHHCTT-HHHH CS
       F-box  4 srLPsevlrhILerL..plsdllalrrVSkgwr 34
                s+LP ev++h+L +L  + ++l a+ rV+  w+
  CDO70591.1  8 SDLPIEVVEHVLDQLrgDAKTLAACCRVCSAWY 40
                89************9555555*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2489.18
//
Query:       CDO70592.1  [L=222]
Description: hypothetical protein BN946_scf184656.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-21   74.1   7.1      2e-16   59.9   3.1    2.1  2  PRA1      PRA1 family protein


Domain annotation for each model (and alignments):
>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.5e-07    0.0063       2      28 ..      47      73 ..      46      77 .. 0.92
   2 !   59.9   3.1   1.1e-20     2e-16      41     138 ..     115     212 ..      99     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.5e-07
        PRA1  2 elaplRpwsefldlsrfslPkslskat 28
                +l+ lRp sef+d +r+s+P++l++at
  CDO70592.1 47 RLSALRPPSEFFDHTRISRPADLNQAT 73
                6899*******************9987 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 1.1e-20
        PRA1  41 NYlivvllvlllslltnplslivllllvlawlflyflrseplvlfgrelsdrvvlivllvvsvlllfltgavlvllwalliglllvllHAsfrkrndk 138
                 NY ++v+l+ +++lltn   ++++l+lv + + ++ + ++p+++++++++++ ++++l+v+ ++ll++++++ +++w ++++ +l+l HA + ++ ++
  CDO70592.1 115 NYSLIVILLAVYALLTNIQLIFAVLFLVGGFAAINRFGTDPIQVGEHTITQKSLYTGLFVIGIPLLWFASPFGTFFWLVGASSVLILGHACMIEPGIE 212
                 ******************************************************************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1609.88
//
Query:       CDO70593.1  [L=170]
Description: hypothetical protein BN946_scf184656.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-05   22.6   0.0    0.00013   21.9   0.0    1.4  1  PAS       PAS fold
  ------ inclusion threshold ------
      0.095   13.0   0.0       0.17   12.2   0.0    1.5  1  PAS_3     PAS fold


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.5e-08   0.00013       4      53 ..      54     104 ..      51     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-08
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSB.GGGGBSTT CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsreevlgks.lldlihee 53 
                 + +++ + +p++++++ g+i +v ++++ l+G++ ee++g+  ++ +++e+
  CDO70593.1  54 DKLVSFSGTPTVAWRRTGEICLVGPEFCMLTGWEKEELVGRRkYIYELFEN 104
                 566777899******************************974133334444 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.17       5      54 ..      77     128 ..      73     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
       PAS_3   5 serveeilGyspeellgkveswldlvhpeDrervrealqeal..kkgepyeg 54 
                  ++++ ++G+++eel g+ + +++l   +   +++e++++++  ++ +++  
  CDO70593.1  77 GPEFCMLTGWEKEELVGRRKYIYELFENQSVVEYWENFANHAfeNTTQSVYS 128
                 689*********************************9999986533333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1166.46
//
Query:       CDO70594.1  [L=159]
Description: hypothetical protein BN946_scf184656.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   24.1  11.2    4.5e-05   23.5  11.2    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5  11.2   2.5e-09   4.5e-05       1      38 [.      87     125 ..      87     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.5e-09
                 SS-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTCCC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkkln..leCtfysessk 38 
                 +aC +C k +  Cd  +P C++C+k++   +Ct  ++++ 
  CDO70594.1  87 RACFHCQKAHLTCDDSRP-CQRCIKRGmaDNCTEGHRKKA 125
                 69****************.*********999**7777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1103.39
//
Query:       CDO70595.1  [L=229]
Description: hypothetical protein BN946_scf184656.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-05   24.7   0.2    5.6e-05   23.6   0.2    1.7  1  PrmC_N    PrmC N-terminal domain


Domain annotation for each model (and alignments):
>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   3.1e-09   5.6e-05      50      71 .]     120     141 ..      79     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.1e-09
      PrmC_N  50 lerfeelierRaarePlqyIlG 71 
                 ++ ++e++ rR ++ePlqyIlG
  CDO70595.1 120 ATSLQEMVDRRVRHEPLQYILG 141
                 6789*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1614.68
//
Query:       CDO70596.1  [L=305]
Description: hypothetical protein BN946_scf184656.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-40  135.1  22.6    1.5e-08   35.1   0.2    7.1  7  WD40          WD domain, G-beta repeat
    4.8e-08   33.2   0.6      0.096   13.0   0.0    4.7  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    0.00037   19.3   3.0       0.17   10.5   0.2    3.5  3  Nup160        Nucleoporin Nup120/160
     0.0011   18.1   0.0       0.12   11.5   0.0    2.7  3  DUF1513       Protein of unknown function (DUF1513)
     0.0019   18.1   1.2        5.7    7.0   0.0    4.5  6  PD40          WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.019   13.5   0.1       0.81    8.1   0.1    2.4  2  Cytochrom_D1  Cytochrome D1 heme domain
       0.13   12.2   0.0       0.22   11.4   0.0    1.4  1  DUF1416       Protein of unknown function (DUF1416)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.7e-07   0.00095       4      37 ..       7      42 ..       4      43 .. 0.88
   2 !   31.6   1.7   7.7e-11     2e-07       3      38 .]      54      90 ..      52      90 .. 0.93
   3 !   35.1   0.2     6e-12   1.5e-08       3      38 .]      96     132 ..      94     132 .. 0.93
   4 !   10.8   0.1   0.00029      0.75      23      37 ..     155     169 ..     136     170 .. 0.80
   5 !   27.2   0.1   1.9e-09     5e-06       6      38 .]     180     212 ..     174     212 .. 0.87
   6 !    9.3   0.0   0.00085       2.2       3      38 .]     218     252 ..     216     252 .. 0.74
   7 !   12.2   0.1    0.0001      0.26      13      37 ..     278     301 ..     268     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.7e-07
                EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40  4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37
                l++  GH ++vt++a  s + ++++++s+D+t+ +W
  CDO70596.1  7 LGSMAGHkGWVTAIAtSSENPDMILTASRDKTIIVW 42
                67788**777*****9999999999*********** PP

  == domain 2  score: 31.6 bits;  conditional E-value: 7.7e-11
                EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                + r+l GH++ v+++  s+dg++ +s+s+D+t+r+Wd
  CDO70596.1 54 PKRILHGHNHfVSDVVISSDGQFALSSSWDHTLRLWD 90
                67999***777************99***********9 PP

  == domain 3  score: 35.1 bits;  conditional E-value: 6e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++r + GH s+v s++fs d++ ++sGs+D+t+++W+
  CDO70596.1  96 TTRRFVGHtSDVLSVSFSADNRQIVSGSRDRTIKLWN 132
                 567899**999*************************8 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00029
                 SEEEEEETTSEEEEE CS
        WD40  23 awlasGsdDgtvriW 37 
                 + ++s+++D+ v++W
  CDO70596.1 155 PVIVSCGWDKVVKVW 169
                 4589*********** PP

  == domain 5  score: 27.2 bits;  conditional E-value: 1.9e-09
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ GH + ++ +++spdg++ asG++Dg  ++Wd
  CDO70596.1 180 HY-GHtGYINTVSVSPDGSLAASGGKDGITMLWD 212
                 34.9*666*************************9 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00085
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +l++l++  + v++l fsp+  wl++++    ++i+d
  CDO70596.1 218 HLYSLEAG-DiVNALVFSPNRYWLCAAT-ASCIKIFD 252
                 55566543.448************8877.88888876 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 0.0001
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v s+a+s dg+ l+ G  D  vr+W
  CDO70596.1 278 V-SIAWSADGQTLFGGFTDDLVRVW 301
                 3.888*********7767******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0089        23       8      89 ..      28     112 ..      19     115 .. 0.69
   2 ?    1.8   0.0      0.12     3e+02      37      66 ..     103     132 ..      96     136 .. 0.89
   3 !   13.0   0.0   3.8e-05     0.096      28      85 ..     167     229 ..     157     236 .. 0.83
   4 ?    5.1   0.0     0.011        29      39      78 ..     226     264 ..     223     270 .. 0.86
   5 !    5.4   0.0    0.0085        22      36      67 ..     272     303 ..     266     305 .] 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0089
  ANAPC4_WD40   8 DLiAlatedgellvfRlng........qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  D+i  a+ d+ ++v  l          +r+ +    ++++ v+++  + dg++   +  d ++rl d +sg + + +  +++  v ++++
   CDO70596.1  28 DMILTASRDKTIIVWQLTRdedqygypKRILH----GHNHFVSDVVISSDGQFALSSSWDHTLRLWDLNSGATTRRFVGHTS-DVLSVSF 112
                  45555555555555544443333333334443....47888999999**************************999966665.4777766 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlld 66 
                  + s v s++++ d++ ++ +  d +++l +
   CDO70596.1 103 HTSDVLSVSFSADNRQIVSGSRDRTIKLWN 132
                  5678999******************99976 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 3.8e-05
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +vw+l       ++ ++ + ++ ++ +pdg+l a + +dg   l d ++gk + sl++++   v+
   CDO70596.1 167 KVWELskfklktNHYGHTGYINTVSVSPDGSLAASGGKDGITMLWDLNEGKHLYSLEAGDI--VN 229
                  56666788877677788999*********************************99998765..55 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.011
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                    v++L ++p+   L+ a++   ++++d es+ +v +l+ 
   CDO70596.1 226 DIVNALVFSPNRYWLCAATAS-CIKIFDLESKSIVDELKP 264
                  56899**********999885.69***********98875 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.0085
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +++ e  s+aW+ dg+ L  ++ d  vr+  +
   CDO70596.1 272 AREPECVSIAWSADGQTLFGGFTDDLVRVWTV 303
                  55667789***************999998765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.012        30     224     248 ..      21      45 ..       9      49 .. 0.80
   2 !   10.5   0.2   6.6e-05      0.17     220     253 ..      63      97 ..      54     101 .. 0.83
   3 !    4.2   0.1    0.0055        14     223     250 ..     110     136 ..      95     143 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.012
                 .....TTTEEEEEETT-EEEEEETT CS
      Nup160 224 avveigqtylfalsrdgkLrvWnll 248
                 a ++++ ++++++srd+++ vW l+
  CDO70596.1  21 ATSSENPDMILTASRDKTIIVWQLT 45 
                 3333389***************886 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.6e-05
                 EEET......TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 220 dvavavvei.gqtylfalsrdgkLrvWnlltgkcl 253
                 +++++vv + + +++++ s d++Lr+W+l++g ++
  CDO70596.1  63 HFVSDVVISsDGQFALSSSWDHTLRLWDLNSGATT 97 
                 5666677557999****************998766 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0055
                 T.....TTTEEEEEETT-EEEEEETTTT CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltg 250
                 v+++  ++  +++ srd+++++Wn+l  
  CDO70596.1 110 VSFSA-DNRQIVSGSRDRTIKLWNTLGE 136
                 33343.88999999**********9876 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.11   2.9e+02     216     249 ..      14      47 ..       7      51 .. 0.86
   2 !   11.5   0.0   4.6e-05      0.12     197     275 ..      45     122 ..      20     143 .. 0.75
   3 ?    3.4   0.0     0.013        33     214     259 ..     182     226 ..     166     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
     DUF1513 216 agYigsvavdsegrlvavtsPrgnlvavwdlasg 249
                 +g++ ++a++se+  + +t+ r ++++vw+l+++
  CDO70596.1  14 KGWVTAIATSSENPDMILTASRDKTIIVWQLTRD 47 
                 788999*******9999************87665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.6e-05
     DUF1513 197 rrgealealeapeeelaalagYigsvavdsegrlvavtsPrgnlvavwdlasgellee..aaladaagvaaaksgflvssG 275
                 +r+e   ++  p++ l+  ++++ +v+++s+g  +a++s   +++ +wdl+sg++++    + +d+  v+  +++  + sG
  CDO70596.1  45 TRDE--DQYGYPKRILHGHNHFVSDVVISSDG-QFALSSSWDHTLRLWDLNSGATTRRfvGHTSDVLSVSFSADNRQIVSG 122
                 4444..5666778889999*********9987.788*****************9988622467888888877776444444 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.013
     DUF1513 214 alagYigsvavdsegrlvavtsPrgnlvavwdlasgelleeaalad 259
                    gYi  v v+ +g  +a++  + ++ ++wdl++g+ l + +  d
  CDO70596.1 182 GHTGYINTVSVSPDG-SLAASGGKDGITMLWDLNEGKHLYSLEAGD 226
                 5579*******9997.667899999999*******99887776666 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   4.1e+03      23      34 ..      40      54 ..      38      57 .. 0.78
   2 ?   -1.5   0.0         1   2.6e+03      25      31 ..      70      79 ..      68      89 .. 0.56
   3 ?   -1.3   0.0      0.93   2.4e+03      15      24 ..     111     120 ..     109     120 .. 0.85
   4 !    5.7   0.0    0.0059        15       8      23 ..     184     199 ..     175     200 .. 0.75
   5 ?   -3.2   0.0       3.4   8.8e+03      16      21 ..     233     238 ..     231     240 .. 0.59
   6 !    7.0   0.0    0.0022       5.7      14      23 ..     280     289 ..     278     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
                EEEEEECT....TCE CS
        PD40 23 laFsSdRg...sGkp 34
                +++  +R+   +G+p
  CDO70596.1 40 IVWQLTRDedqYGYP 54
                889999998788887 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
                EEEECT.... CS
        PD40 25 FsSdRg...s 31
                +sSd++   s
  CDO70596.1 70 ISSDGQfalS 79
                4555444444 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.93
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 sfS D + ++
  CDO70596.1 111 SFSADNRQIV 120
                 8****99986 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0059
                 SS.EEEEEE-TTSSEE CS
        PD40   8 pgnegaPsfSPDGkrl 23 
                 +g++   s+SPDG+  
  CDO70596.1 184 TGYINTVSVSPDGSLA 199
                 4599999******865 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3.4
                 E-TTSS CS
        PD40  16 fSPDGk 21 
                 fSP+  
  CDO70596.1 233 FSPNRY 238
                 677665 PP

  == domain 6  score: 7.0 bits;  conditional E-value: 0.0022
                 EEE-TTSSEE CS
        PD40  14 PsfSPDGkrl 23 
                 +++S DG++l
  CDO70596.1 280 IAWSADGQTL 289
                 79*******9 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00032      0.81      37      95 ..      64     123 ..      22     125 .. 0.85
   2 ?    2.7   0.0     0.014        36      36      74 ..     226     263 ..     203     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00032
                   EEEEEE-TT.SSEEEEEETTSEEEEEESSSSS.EEEEEE-SSEEEEEEE--TTSEEEEEE CS
  Cytochrom_D1  37 lHisrvfasdgRyvyvigRDgkvtliDLwake.ivaevkiGlnarsvavSqddryvivgn 95 
                       +v +sdg +++  + D ++ l DL     + + v   ++  sv  S d+r ++ g+
    CDO70596.1  64 FVSDVVISSDGQFALSSSWDHTLRLWDLNSGAtTRRFVGHTSDVLSVSFSADNRQIVSGS 123
                   44557899********************999845666888999999**********9986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.014
                   TEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE CS
  Cytochrom_D1  36 alHisrvfasdgRyvyvigRDgkvtliDLwakeivaevk 74 
                   ++  + vf++ +Ry + ++  + ++++DL  k iv e+k
    CDO70596.1 226 DIVNALVFSP-NRYWLCAATASCIKIFDLESKSIVDELK 263
                   5556778999.9999999999999999999999998886 PP

>> DUF1416  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-05      0.22      18      61 ..      36      78 ..      21     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
     DUF1416 18 keaviqGkvtrdgepvggayvRLLdssgeFtaevvtsaeGefrF 61
                ++++i  + trd++   g   R+L +++ F+++vv s++G+f  
  CDO70596.1 36 DKTIIVWQLTRDEDQ-YGYPKRILHGHNHFVSDVVISSDGQFAL 78
                577888888887653.44457********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2126.70
//
Query:       CDO70597.1  [L=424]
Description: hypothetical protein BN946_scf184656.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-48  164.4   0.0    5.8e-48  164.0   0.0    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   3.2e-52   5.8e-48      18     300 ..      15     363 ..      13     368 .. 0.74

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 3.2e-52
                   HHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCT.................TT.S-EEEE-SS-SSSS.S-SHHHHTTTSSTSS....... CS
  IU_nuc_hydro  18 llalaespeiellgittvaGnvsleqatrnalrvlealgg.................rddipvyaGaekpllre.kaaaeihGedGlgdv....... 89 
                   llala+ pe+e+l+i++++Gn++++ +  n+l++ +al++                 r++   +aG + pl  e + a+++hG+dGlgd+       
    CDO70597.1  15 LLALAS-PELEVLAIIISFGNTDAKSSYVNVLKIYQALARhveqlpddasrfpglkpRRKTILAAGEDGPLEGElHSAQYFHGRDGLGDIaerhpel 110
                   678885.****************************999999999987777777776644344577788899888777778********886655544 PP

                   -.--SSH...........CSCSSHHHHHHHHHHHHCHHTTTT.EEEEECS-SHHHHHHHHHTCCH.HHHEEEEEEE---SSS--SSSSSS-HHHHHS CS
  IU_nuc_hydro  90 llpeper...........kaesesavdalidaveaareypge.vtlvatGplTNiAlalrldpel.akkvkrlviMGGaftarGNvtpvaEfNifvD 173
                   +                 + +++s v++  +++++ +e     ++ +a+GplTN+A+++r d+e   +++ r+v+MGGa++ +GN++pvaEfN+f+D
    CDO70597.1 111 D-----VpeetpashsqlEFTKRSGVQVALEIIKSEPE---RaISYLALGPLTNLARLMRIDREAvHARIGRIVCMGGALDVPGNTSPVAEFNFFAD 199
                   1.....03334455666788888888888999955544...44*******************888589***************************** PP

                   HHHHHHHHHTS-E..........EEEE-HHHHTTSCHEECH..HHHHHHHCST.........CBHHH.HHHHHHH.HHHHHHHHHHH..SSEEE-HH CS
  IU_nuc_hydro 174 PeAAkiVlesapv.........kitlvpldvthkvqallts..eeveelaale.........kglga.fladlle.fyikaykeaeg..sdgaplhD 246
                   P A k  l   p+         +++l+pld+t+ ++ +++   + v++    +             +  l  +++ f  ++ +   +  +d + lhD
    CDO70597.1 200 PYAVKELLV--PSdpghglpleRFILLPLDITTPHELSFPYykATVDPAF--DsncspsrpdG---KpPLVHFTSsFLERTREVMVEfgKDAMELHD 289
                   ********4..44556888899***********77743333324444421..12244444321...143444444144444444444779******* PP

                   HHHHHHHH-.G..............GGEEEEEEEEEEESSSSTTTTEEEEETSTT.....TTS--EEEEEEE-H CS
  IU_nuc_hydro 247 plavavald.p..............elvttkrlavdveleggltrGrtvvdlrrl.....kkaknvkvatevdv 300
                     av++a++ p              + +++++ + d+e  g+ltrG++vvd+r++     ++a++++v  e+ +
    CDO70597.1 290 IAAVWCAIEnPpvkdehedalptlqDGWKASKRKFDIERVGELTRGMCVVDRRDDqgayaPGANRAEVQAELER 363
                   ********73345554444444333333667888999999***********99998888877777777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3005.23
//
Query:       CDO70598.1  [L=444]
Description: hypothetical protein BN946_scf184656.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.0  31.3    1.8e-09   37.0  31.3    1.7  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  31.3   9.8e-14   1.8e-09       7     348 ..      24     357 ..      17     364 .. 0.75
   2 ?   -0.6   0.2     0.028     5e+02      44      78 ..     356     390 ..     352     396 .. 0.63

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 9.8e-14
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpa 105
                   ++++++++ +l   l+ ++++  +   +  tl  l+++ a l++++++  f rr++l lg  + +++   +++  ++  ++ + ++ G g ++l  a
  CDO70598.1  24 SLFFTWGFAYGLLD-VLNAHFQSIFDIGKTKSTLLQLAYFGAYLVYAPIASVF-RRPWLTLGQGAIFFW-PSAVY-RTYGGFVGCTFVIGCGLSCLEVA 118
                 44555555555565.78888885555555588999999999999999999999.999999999999999.66664.55559****************** PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllgg.llasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 ++++i+ + +++  +  + + +++ ++++  gp++++ ++  ++         ++v++++a+++l++ +   l+++++ pe   ++ ++e       +l
  CDO70598.1 119 ANSYISVLGSPKYAAARLNFSQGFQGVASFAGPMIASrWFF-QGKnansldtVQWVYLAVAGLGLVLNI---LFYFCKLPEITQDALAQEM---HDVGL 210
                 ********************************888884555.43368899****************988...7777777777777777773...33333 PP

       MFS_1 197 vpawkallkdpvlw.......illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaa 288
                 ++       + ++w        +++  +++++ ++ ++  +  ++ +  g++   la+ l++ +++ + ++++++  l++ + +  +lll++ ++++++
  CDO70598.1 211 TN------DKDPFWkqyrcifGWVAQTAYVGAQVAVASLAVNYLTEQGVGID-KPLASQLFSYCQITFTVGRFVGVVLLNWVDP--ALLLSIYAIACCT 300
                 33......44445555543324555555555444445555555688888888.7999999************9999999**888..9999999999999 PP

       MFS_1 289 lglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                 ++l ++  +   + ++  l+ + f+ ++++p +++l +++++ +++ + sgl+ +  + g
  CDO70598.1 301 FSLGVTFGP--GLSGVGCLFALFFFESICYPVIFTLGTKNLG-RHTKRGSGLIVMGVGGG 357
                 999888888..3333333333445888889999999999997.88888888888766544 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.028
       MFS_1  44 gaavaslplGrlsdrfGrrrvlllglllfalglll 78 
                 g a++ + +G+++dr +    +++ ++++++++++
  CDO70598.1 356 GGAWFPPAAGSIADRDSTAHSYIVPFAGYVAMAIY 390
                 44666677777777766666777777777777333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3226.85
//
Query:       CDO70599.1  [L=260]
Description: hypothetical protein BN946_scf184656.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1749.55
//
Query:       CDO70600.1  [L=268]
Description: hypothetical protein BN946_scf184656.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   21.8   3.9    0.00024   21.1   3.9    1.2  1  bZIP_1    bZIP transcription factor
     0.0011   18.9   3.3     0.0018   18.3   3.3    1.3  1  bZIP_2    Basic region leucine zipper
  ------ inclusion threshold ------
      0.025   15.0   0.5      0.039   14.4   0.5    1.2  1  ZapB      Cell division protein ZapB


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   3.9     4e-08   0.00024      17      56 ..      20      59 ..      19      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4e-08
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 17 ArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkev 56
                +r +R RK a+ + Le rvk+ e eN+ L+ e+e+l+ + 
  CDO70600.1 20 QRDYRARKAAYLADLEVRVKKAEDENALLRREVESLQAKL 59
                6889*******************************98765 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.3     3e-07    0.0018      17      53 ..      21      57 ..      21      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3e-07
                XX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 17 rrsRekkkakeeeleervkeLeeeNaqLrqkveqLek 53
                r +R +k a+ ++le rvk+ e eNa Lr++ve+L++
  CDO70600.1 21 RDYRARKAAYLADLEVRVKKAEDENALLRREVESLQA 57
                569*******************************986 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.5   6.6e-06     0.039       6      35 ..      31      60 ..      27      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.6e-06
        ZapB  6 LeqLEskiqkaidtitlLqmeieeLkeene 35
                L  LE +++ka d+ +lL+ e+e L+++ +
  CDO70600.1 31 LADLEVRVKKAEDENALLRREVESLQAKLQ 60
                889***********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1875.97
//
Query:       CDO70601.1  [L=246]
Description: hypothetical protein BN946_scf184656.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1810.21
//
Query:       CDO70602.1  [L=199]
Description: hypothetical protein BN946_scf184656.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1608.15
//
Query:       CDO70603.1  [L=564]
Description: hypothetical protein BN946_scf184656.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 3530.40
//
Query:       CDO70604.1  [L=306]
Description: hypothetical protein BN946_scf184656.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2217.79
//
Query:       CDO70605.1  [L=225]
Description: hypothetical protein BN946_scf184748.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-06   28.5   0.0    3.9e-06   27.5   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      3e-06   27.1   0.0    3.3e-06   27.0   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   15.7   0.0       0.03   15.0   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
      0.027   13.8   0.0      0.039   13.3   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   8.6e-10   3.9e-06       2      92 ..      23     109 ..      22     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 8.6e-10
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH.TTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraee.eglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      LdlGc  G+++++l + + ++++v g+D+ +e++e  +e + + +++ ++f + ++ dlp     +D  + +    +++++ + +al++++ v
       CDO70605.1  23 LDLGCCMGTDVRKLVHDGyPASHVFGCDLRQEYIELGHELFGDaDRCPIRFFTSNVFDLPTT---VDSATRN---TVVPEPSTVTALAQLRGV 109
                      9**************998669********************995556************954...4444442...134555555555555555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.4e-10   3.3e-06       2      95 ..      17     111 ..      16     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 7.4e-10
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl......nalad 89 
                      + ++r+lDlGC  G+++ +l +  +p ++v+G D  +e iel  e   +     ++F  +++++l++     ++D  + n v+       ala 
       CDO70605.1  17 KGNTRFLDLGCCMGTDVRKLVHDGYPASHVFGCDLRQEYIELGHELFGDADRCPIRFFTSNVFDLPT-----TVDSATRNTVVpepstvTALAQ 105
                      6799********************************************99999*************5.....4888888855544444455555 PP

  Methyltransf_31  90 pdkile 95 
                      +  +l 
       CDO70605.1 106 LRGVLT 111
                      555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   6.7e-06      0.03       1      57 [.      23      83 ..      23     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.7e-06
                     EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS CS
  Methyltransf_11  1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaeklpf 57
                     Ld+Gc+ G  +++l + g   ++v+g+Dl +e ++l +e   +++   ++f  +++ +lp 
       CDO70605.1 23 LDLGCCMGTDVRKLVHDGypaSHVFGCDLRQEYIELGHELFGDADRcPIRFFTSNVFDLPT 83
                     8**************88889***************99999998888888899999998885 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.6e-06     0.039      44     122 ..      14      93 ..       8     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-06
                      -S--TT.EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEE CS
  Ubie_methyltran  44 avkrga.kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtv 122
                      a+k+g+ ++lD+ +  g    kl +      +v ++D+ ++ ++ g++   +     i+f ++n  +Lp + ds    tv
       CDO70605.1  14 AGKKGNtRFLDLGCCMGTDVRKLVHDGYPASHVFGCDLRQEYIELGHELFGDADRCPIRFFTSNVFDLPTTVDSATRNTV 93 
                      56666648****9999998999999999999**************************************99888766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1659.68
//
Query:       CDO70606.1  [L=372]
Description: hypothetical protein BN946_scf184748.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-25   87.2   1.6    9.9e-25   86.5   1.6    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    5.6e-16   58.7   0.0    1.1e-15   57.7   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.7e-09   37.4   0.0    7.6e-09   36.7   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   1.6   1.7e-28   9.9e-25       2     108 ..      37     142 ..      36     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.7e-28
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 ge++ikv a+g+Cg+D  + ++   ++++lp i+GHE+vG v++v ++ + +kvG+rV + ++   c++Ca+C+ g++  Ce++++ g+ +dGg+aeyv
  CDO70606.1  37 GEIVIKVLACGVCGTDDILPSQ--VMPAPLPRIPGHEVVGDVVAVSSRERLWKVGQRVGAGWHGGhCSTCARCRAGDYLTCESQDINGAIRDGGYAEYV 133
                 79**************988876..8***********************************999877********************************* PP

                 EECGGGEEE CS
       ADH_N 100 vvpekklvk 108
                 +++++ ++ 
  CDO70606.1 134 TLRSEAVIA 142
                 *99988875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.9e-19   1.1e-15       1     124 [.     197     333 ..     197     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.9e-19
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC...TSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg...gkgeee 96 
                 g+G++a+q+A a+G+++ia + ++ k +la++lGad++i+ ++ +  +++++l    gv+v++ ++ + a+ e+ +++l+ +G+l v ++   +     
  CDO70606.1 197 GLGHLAIQFASAMGFRTIALSFDSGKEDLARQLGADQFIDGTKVNQAQELQKLG---GVKVIMSTAPNAAVTENLIEALAVDGTLLVLAVepeP---MR 289
                 89***************************************6658888999999...********************************96432...33 PP

                 ..........EEHHH..........HHHTT-EEEEE-SSCHHHHHHHH CS
  ADH_zinc_N  97 ..........fdlrn..........lllkeksilGsllgslreefkea 124
                               +          lllk++si+G  +gs +++ ++ 
  CDO70606.1 290 ispreprcssA---QcsslmglvvaLLLKRLSIRGWPCGS-PKDAEDC 333
                 22356664440...34445566666778888888888887.5665555 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.3e-12   7.6e-09       1     127 [.     229     366 ..     229     371 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.3e-12
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.....S-EEE-CHHHCTTT-EEEE--GGG...-....... CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp....lsaallkpakkrkgrsvkyeflfsmkas....... 84 
                   lGAd++id +   ++++  + +gv v+  t+ ++a  e+++++l+  G+l++++ +p           +++ + ++++ +  + + + a        
    CDO70606.1 229 LGADQFIDGTkVNQAQELQKLGGVKVIMSTAPNAAVTENLIEALAVDGTLLVLAvEPEpmriS-----PREPRCSSAQCSSLMGL-VVALllkrlsi 319
                   8*********5555543333489*********99999*******999**98777565455652.....22222223333222222.22222334468 PP

                   .......-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  85 ......aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgra 127
                          ++d  e+++a+ ++++++  v+ +fpl++a+eA+++ e++r 
    CDO70606.1 320 rgwpcgSPKD-AEDCLAFAQAKNVKCMVE-RFPLHKAQEAFDRRETARF 366
                   8999988999.*****************9.6************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2746.91
//
Query:       CDO70607.1  [L=160]
Description: hypothetical protein BN946_scf184748.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1314.01
//
Query:       CDO70608.1  [L=534]
Description: hypothetical protein BN946_scf184748.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-38  132.1   0.0    2.5e-38  131.1   0.0    1.6  1  VHS        VHS domain
    5.7e-14   52.2   2.5    1.3e-12   47.9   0.3    3.5  3  GAT        GAT domain
  ------ inclusion threshold ------
      0.022   14.4   0.1      0.054   13.1   0.1    1.6  1  GGA_N-GAT  GGA N-GAT domain


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.0   4.2e-42   2.5e-38       3     141 .]      12     155 ..      10     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 4.2e-42
                 HHHHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCS.TCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTT CS
         VHS   3 sasslekliekATdeslreedlslileicDlinek.eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekkn 100
                   s+le li +A+++ l e++ +l le++D+in+k  ++p+ea+ li++ +n++nphva+laL+ll++lv+ cG++f l+i++keflnelv++++e+++
  CDO70608.1  12 NVSQLEMLITRACNPVLGEPNYALHLEVADYINKKkANTPREAAMLIARLVNHRNPHVAMLALSLLETLVQSCGYPFQLQISTKEFLNELVRRFPERPP 110
                 56889******************************999************************************************************* PP

                 CHCS.HHHHHHHHHHHHHHHT....TT-TTGHHHHHHHHHHHHTT CS
         VHS 101 sklakvkkkvlelleeWadaf....knkpelkkisdvykllkrkg 141
                   +  v +k+l+l+ +W++ +    + k+++  i+d+++ll  kg
  CDO70608.1 111 PFPGPVMQKILDLIHSWKEGIcvesRFKDDFANIRDMHRLLTFKG 155
                 ***99******************9999**************9887 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   7.3e+03      18      31 ..      90     103 ..      63     105 .. 0.57
   2 ?   -0.5   0.0      0.27   1.6e+03      39      57 ..     190     213 ..     165     220 .. 0.55
   3 !   47.9   0.3   2.1e-16   1.3e-12       2      77 .]     237     332 ..     236     332 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
         GAT  18 eellenellkeLye 31 
                  +++ +e l+eL++
  CDO70608.1  90 LQISTKEFLNELVR 103
                 24555666666665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
         GAT  39 riqklieet.....adeedllael 57 
                 ++q+li +      a  ++l+++l
  CDO70608.1 190 KLQELIRRGtprdlAAAQELMKTL 213
                 566666663333332222244444 PP

  == domain 3  score: 47.9 bits;  conditional E-value: 2.1e-16
         GAT   2 nnaklLsemLsstepd..eellenellkeLyetckamqpriqklieet.adeed............llae.......lLqlNDeLnnvlerYerlkkg 77 
                 +++ lL+e+L++++    e++++++++++ ++ +k ++p+iqk+i++  +d+ +                       +Lq+ND++n+vl+rYe++ kg
  CDO70608.1 237 SKVILLNEILDNVDTTkgEKFVQGDVYDQVASILKDARPKIQKWISNAeSDDPEslspspraprhaH--FshspkdmFLQINDQINTVLNRYEAYQKG 332
                 799**********95557*****************************74444446777776666551..04466667****************99775 PP

>> GGA_N-GAT  GGA N-GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     9e-06     0.054       2      32 ..     183     213 ..     183     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9e-06
   GGA_N-GAT   2 edeeksklLarLLkSknpeDLqaANrLIKsm 32 
                 ++e ++ +L++L++ + p DL aA  L K++
  CDO70608.1 183 DREAQEAKLQELIRRGTPRDLAAAQELMKTL 213
                 78999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1881  (0.104914); expected 358.6 (0.02)
Passed bias filter:                      894  (0.0498633); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 3793.31
//
Query:       CDO70609.1  [L=227]
Description: hypothetical protein BN946_scf184748.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-57  194.0   9.7    2.1e-57  193.8   9.7    1.0  1  vATP-synt_E    ATP synthase (E/31 kDa) subunit
  ------ inclusion threshold ------
      0.075   11.7   0.2       0.09   11.4   0.2    1.1  1  Fibrillarin_2  Fibrillarin-like archaeal protein
        7.2    7.3  10.4       0.83   10.3   4.0    2.4  3  DUF883         Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> vATP-synt_E  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   9.7   3.4e-61   2.1e-57       1     199 []      21     217 ..      21     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 3.4e-61
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHCCCCH CS
  vATP-synt_E   1 fIrqeAeekAeeIkakaeeefeiekaklveeeeekieeayekkeKqaelqkkiaiSnalnkarlkvLkareevleevfeeaekkLaeveedkdeYkel 98 
                  fI+qeA ekA+eIk ka+eef+iekaklv++e+++i+ +yekk+K ae+++kia S+  nk+rlk+L+ ree+l+++f+ a++++  +++d  +Y ++
   CDO70609.1  21 FIKQEAMEKAREIKVKADEEFAIEKAKLVKQEQQAIDAQYEKKRKGAEVAQKIAHSTLTNKSRLKLLQQREEHLQDLFSTAREDIVALAQDGGRYVQF 118
                  8************************************************************************************************* PP

                  HHHHHCCCCCCC-SSCEEEEECCCCHHCCCCTHCCCCCCHHCCSSSS--SEEEEESSEBTTSSSEEEECCSSSCEEECCCHHHCHHHHHHHHHHCCCC CS
  vATP-synt_E  99 lkkLivqalvkleepevivrarkeDaelveealdkaaeeykaktkkktvevagdeedfledvlGGvvleaadgkikvnnTlearLelvleqllpeirk 196
                  l++ ivq++++l ep+v+v+ar++D+  ve a++ a+++y++  +  + +++  +  + +d++GGv l +  ++i v+nTl++rL l+ + +lpeir+
   CDO70609.1 119 LEGVIVQGFLSLLEPDVTVYAREKDVAQVERAVEGATKQYNEISGLTVKATVQGT--LSNDIAGGVKLISGTERITVDNTLDERLRLLEDRMLPEIRA 214
                  ******************************************8777766666666..66*************************************** PP

                  CHC CS
  vATP-synt_E 197 aLF 199
                   LF
   CDO70609.1 215 DLF 217
                  **9 PP

>> Fibrillarin_2  Fibrillarin-like archaeal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   1.5e-05      0.09     327     422 ..      15     118 ..      12     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.5e-05
  Fibrillarin_2 327 lprvlkiikeeveekltkvpiqkeelealakavkvvgkeni....yPkkigalavGd..ahWaalkesklakklkvkktvediakeveadkvall. 415
                    + ++++ ik+e  ek  ++ ++ +e  a+ ka  v ++++     y kk   + v    ah +  ++s+l    + +++++d+ +++ +d val  
     CDO70609.1  15 MNKMVAFIKQEAMEKAREIKVKADEEFAIEKAKLVKQEQQAidaqYEKKRKGAEVAQkiAHSTLTNKSRLKLLQQREEHLQDLFSTAREDIVALAq 110
                    5789999***********************999888554431333776666555554348988889999988889999************999865 PP

  Fibrillarin_2 416 .GgrfvsW 422
                     Ggr+v +
     CDO70609.1 111 dGGRYVQF 118
                    69***976 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.0   0.00014      0.83       9      58 ..      10      59 ..       7      80 .. 0.81
   2 ?    0.3   0.1      0.18   1.1e+03      40      65 ..      87     112 ..      66     118 .. 0.57
   3 ?   -2.9   0.1       1.8   1.1e+04      56      66 ..     146     156 ..     138     168 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
      DUF883  9 slladleellkeaadeageeaeelRerleerlerarerlrdaeeavaera 58
                ++l+++++++   ++ea+e+a+e++ +++e+++  +++l ++e+++ +  
  CDO70609.1 10 EVLSEMNKMVAFIKQEAMEKAREIKVKADEEFAIEKAKLVKQEQQAIDAQ 59
                7899*************************************999965433 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
      DUF883  40 lerarerlrdaeeavaerakeaaeaa 65 
                 l++  e+l+d+  +++e + + a++ 
  CDO70609.1  87 LQQREEHLQDLFSTAREDIVALAQDG 112
                 33334444455445555444444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
      DUF883  56 erakeaaeaad 66 
                 +  +++  a++
  CDO70609.1 146 QVERAVEGATK 156
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1774  (0.0989458); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1602.87
//
Query:       CDO70610.1  [L=288]
Description: hypothetical protein BN946_scf184748.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   15.6   0.0      0.039   14.3   0.0    1.6  2  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.2e-06     0.039      11      65 ..      52     107 ..      42     109 .. 0.88
   2 ?   -3.0   0.0      0.56     1e+04      21      32 ..     240     251 ..     232     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.2e-06
  PP-binding  11 lgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfe.hptlaelaa 65 
                 lg++++++++d ++   GlD  ++ +l+++l+ + + e++ls l+e   t + laa
  CDO70610.1  52 LGRSPQPVGVDIPIIHSGLDPQSLSKLQSWLKSAHDYEVSLSRLLEdDVTAEGLAA 107
                 58899999************************************987888888876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.56
  PP-binding  21 dtdlfdlGlDSl 32 
                  t+lf   lDS+
  CDO70610.1 240 RTPLFASFLDSV 251
                 588999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2183.11
//
Query:       CDO70611.1  [L=354]
Description: hypothetical protein BN946_scf184748.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-08   33.9   0.0    3.3e-08   33.6   0.0    1.1  1  O-FucT    GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.9e-12   3.3e-08     193     320 ..     201     343 ..     127     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.9e-12
      O-FucT 193 lalHLRrekDflaaCehgggee....ellaspre.......s...rreegk...ltpeecvpsleeialqlkgllkel...kltsvfvAtdeiyggeel 271
                 l lH+Rr+ Df+  C+ +  ++      ++s  +       s    +       l  + c+p++++i++++ ++ +     +l++v++ t  +++   +
  CDO70611.1 201 LVLHIRRG-DFKGHCYDVLARRskgyTGFNSFPAlpdrwelSdeiSEG--DkraLYTRHCFPDIDTIVERVEEIRHIAtgrDLSQVYIMTNGSPS-W-V 294
                 679*****.******998666654554444444488888762544333..2347**************999888766555599********9997.7.9 PP

      O-FucT 272 kelkkefpnlvkvtkeklaskeelekfkdgsvaaiDqiicsrsdvFigt 320
                  +lk+++++  +  +   +    l++ +++ ++a+D++i+ r++vF+g+
  CDO70611.1 295 CKLKDALKKRHDWANIASSRDLMLNPEQEYVSQAVDMLIAQRGQVFVGN 343
                 *******99775544444444556777777777***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2594.35
//
Query:       CDO70612.1  [L=280]
Description: hypothetical protein BN946_scf184748.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 2070.92
//
Query:       CDO70613.1  [L=536]
Description: hypothetical protein BN946_scf184748.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-66  223.5   0.0    4.4e-66  223.1   0.0    1.1  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
    1.7e-05   24.0   0.0    3.2e-05   23.1   0.0    1.4  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.1   0.0     5e-70   4.4e-66       9     367 ..      58     391 ..      46     393 .. 0.92

  Alignments for each domain:
  == domain 1  score: 223.1 bits;  conditional E-value: 5e-70
                    CSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-E CS
  Pyridoxal_deC   9 deaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegg 104
                    + a++ + + + ++++ ++ +la++v+tw+ p+  ++l+              + i kn ++ +e+P +  l ++++  la+l+++p    e+ + 
     CDO70613.1  58 ESAYQLIHD-ELSLDGSTALNLASFVNTWM-PKEANQLM-------------MENISKNLIDQDEYPMTQVLHTRCVSILADLWHAP--STEQ-AI 135
                    556666677.999*****************.66666666.............49*********************************..3333.89 PP

                    EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEE CS
  Pyridoxal_deC 105 gvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipf 200
                    g+ ++gsse++ l++lA+++ ++++ k++gk+++e      ++++ +++a++++ek+a++++v+ r++p+ e+   +  ++++a+e ++e+  ++ 
     CDO70613.1 136 GTATTGSSEAVQLGGLAMKRIWQEKRKAAGKSIHE----PGPNIVMGANAQVALEKFARYFDVEARLVPISEES-HYRLDPKRAMEYVDEN--TI- 223
                    ******************************99777....78******************************966.78889***********..77. PP

                    EEEEEBS-TTT-BB--HHHHHHHHHH......CT-EEEEE-TTGGGGGGSGGGGG...GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHH CS
  Pyridoxal_deC 201 fvvatlGttvlgaFddlkelgdicek......ydlwlHvDAAyaGsaficpeirh...llkgieradSitvnphKlllvlldcsalivkdkealqq 287
                     v ++lG+t++g ++ ++e++ ++++      + +++HvDAA++G  fi+p+  +   ++++i+r+ Si++++hK++l ++++++ +++ +e l++
     CDO70613.1 224 GVYVILGSTYTGHYEPVQEMAALLDEyekrtgHWVPIHVDAASGG--FIAPFATPklkWDFRIPRVVSINASGHKFGLSYVGVGWAVWRSQEYLPK 317
                    9*************************9999988899*********..*******99**************************************** PP

                    HH-EEECCCT.TTTTTSEECCCGSSSSSG..HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBS CS
  Pyridoxal_deC 288 alqleaeYLehedsdvaadlgtkaiplsr..rvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevel 367
                     l++e +YL+        +   + +++sr  +  i++++ ++  lG+eg++n+  + +++a+ l   ++k + f + ++ + 
     CDO70613.1 318 DLIFELHYLGS------IE-YSFSLNFSRpaHPIIAQYFNFVH-LGYEGYKNVALQDLKNARLLSRALEKSGLFTVLSDIHR 391
                    **********3......33.3799*****98899999999999.******************************99998775 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.6e-09   3.2e-05      53     214 ..     123     310 ..     110     323 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.6e-09
                  HHHHT-STGGGEEEESSHHH..HHHHHHHHCCCC-TTTSEEEEE.........TTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE..GGGHHHH-- CS
  Aminotran_5  53 aelinaeseeeiiftsGtte..ainlvalslarslkpgdeivvt.........eaehhanlvpwqelakrtgakvkvipldeegeld..ldeleklln 137
                  a+l +a+s+e+ i t  t++  a++l  l+++r +++++++  +         +++ +a++ + ++ a+   ++ + +p+ ee +++  ++++ ++++
   CDO70613.1 123 ADLWHAPSTEQAIGTATTGSseAVQLGGLAMKRIWQEKRKAAGKsihepgpniVMGANAQV-ALEKFARYFDVEARLVPISEESHYRldPKRAMEYVD 219
                  5666666666666544333311555555444444555555543311111111147788888.899999999999998888887776533778899*** PP

                  TTEEEEEEESBETTTTEB--HHHHHHHHHHTT......-EEEEE-TTTTTTS---HHHHTESE.......EEEETTT.TTSSTT-EEEEEE CS
  Aminotran_5 138 ektklvaithvsnvtGtiqpveeigklakkkg......alvlvDaaqavghipidvkklgvDf.......lafsghK.llgPtGiGvlyvr 214
                  e+t  v++   s+ tG  +pv+e+++l+ +++      + ++vDaa++   +p+ + kl+ Df       + +sghK  l   G+G  + r
   CDO70613.1 220 ENTIGVYVILGSTYTGHYEPVQEMAALLDEYEkrtghwVPIHVDAASGGFIAPFATPKLKWDFriprvvsINASGHKfGLSYVGVGWAVWR 310
                  *************************9987653233333568*********************96666666679999977888888865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3417.09
//
Query:       CDO70614.1  [L=86]
Description: hypothetical protein BN946_scf184748.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-32  110.5   7.0    1.8e-16   59.8   1.4    2.3  2  Con-6            Conidiation protein 6
     0.0029   17.5   5.4     0.0044   16.9   0.8    2.0  2  SpoIIIAH         SpoIIIAH-like protein
  ------ inclusion threshold ------
      0.024   14.9   4.4      0.031   14.6   2.1    2.1  2  ATP-synt_DE      ATP synthase, Delta/Epsilon chain, long alph
       0.28   11.3   0.6         18    5.5   0.1    2.1  2  Glyco_transf_8C  Glycosyl transferase family 8 C-terminal


Domain annotation for each model (and alignments):
>> Con-6  Conidiation protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.4   3.1e-18   1.4e-14       3      34 .]       9      40 ..       8      40 .. 0.96
   2 !   59.8   1.4   4.1e-20   1.8e-16       1      34 []      51      84 ..      51      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 3.1e-18
       Con-6  3 envirGyKAtLsNPnvSeeAKehAkeeLeklg 34
                + v+rG+KA++sNPn SeeAKe+A+e+L++++
  CDO70614.1  9 SQVARGLKAAISNPNNSEEAKERAQERLRDME 40
                67****************************97 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 4.1e-20
       Con-6  1 dpenvirGyKAtLsNPnvSeeAKehAkeeLeklg 34
                ++ nv+ G+KA+LsNPn+SeeAK+h+ ++Le++g
  CDO70614.1 51 HEDNVAIGHKANLSNPNTSEEAKKHSAQVLEEMG 84
                678******************************8 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.8   9.8e-07    0.0044     118     153 ..      12      47 ..       6      49 .. 0.88
   2 ?    3.3   0.3     0.014        62     124     145 ..      62      83 ..      47      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.8e-07
                 HHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHH CS
    SpoIIIAH 118 ketLqeiinnenlseeekqeAqqqlleltekeeken 153
                    L++ i+n+n+see+k+ Aq++l +++e  e e+
  CDO70614.1  12 ARGLKAAISNPNNSEEAKERAQERLRDMEESGELES 47 
                 566999************************998875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.014
                 HHT-TTS-HHHHHHHHHHHHHH CS
    SpoIIIAH 124 iinnenlseeekqeAqqqllel 145
                  ++n+n+see+k+   q l e+
  CDO70614.1  62 NLSNPNTSEEAKKHSAQVLEEM 83 
                 5789999999999999988877 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.1   6.8e-06     0.031       9      25 ..      26      42 ..      21      56 .. 0.78
   2 ?    0.5   0.0      0.17   7.8e+02       9      22 ..      70      83 ..      65      86 .] 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHHHHHHHHHH CS
  ATP-synt_DE  9 eeAkerAeerLeeasdd 25
                 eeAkerA+erL+  +++
   CDO70614.1 26 EEAKERAQERLRDMEES 42
                 9***********97555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHH CS
  ATP-synt_DE  9 eeAkerAeerLeea 22
                 eeAk+   ++Lee 
   CDO70614.1 70 EEAKKHSAQVLEEM 83
                 78998888888886 PP

>> Glyco_transf_8C  Glycosyl transferase family 8 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.004        18      21      38 ..      19      36 ..      16      40 .. 0.83
   2 ?    4.3   0.1    0.0094        42      20      34 ..      62      76 ..      59      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.004
  Glyco_transf_8C 21 llppktakemkkkaKhlf 38
                       +p++++e+k++a+  +
       CDO70614.1 19 ISNPNNSEEAKERAQERL 36
                     678***********9766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0094
  Glyco_transf_8C 20 pllppktakemkkka 34
                      l +p+t++e+kk +
       CDO70614.1 62 NLSNPNTSEEAKKHS 76
                     6889********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 576.47
//
Query:       CDO70615.1  [L=461]
Description: hypothetical protein BN946_scf184748.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-22   77.3  74.7    1.5e-17   63.5  43.7    2.9  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.4   0.00099        18     207     273 ..      55     126 ..      15     134 .. 0.59
   2 !   63.5  43.7   8.5e-22   1.5e-17      58     353 .]     120     407 ..      61     407 .. 0.72
   3 !   27.8  23.0   6.5e-11   1.2e-06       3     148 ..     274     417 ..     272     456 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.00099
       MFS_1 207 pvlw.illialllfffgfsglltllplylqevlgls.....glllaglllallalvgail....allagrlsdrlgr 273
                    w ++ +++++ ++++ +l+++  +  q+ +  +     +  +++  +a+++ vg+++     l+++ l +r++ 
  CDO70615.1  55 IRAWtFCACGFIVEMMVWGFLFSYGIF--QDYYTHNppfnsS-SQVA--IAAVGTVGLGIqygeVLFLSVLFRRYPD 126
                 233666777777777777777777777..7777777666542.4444..4444444444455577777777777665 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 8.5e-22
       MFS_1  58 rfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravf 154
                  f r + ++ +++   ++      +++++w l+l+  v  G+ +g+++  +++l+ +wf++ +rg+a g++ ag+++G  + p l  +l+ ++g r++ 
  CDO70615.1 120 LFRRYPdYMRTAMWPNIAP-----YIQQVWqLILLQGVGLGFSGGFMYLPVMILLPQWFSE-HRGLAGGIIFAGTGVGGFVFPFLLNALLNNVGLRWTL 212
                 4555566666666666666.....23789989999999**********************9.************************************* PP

       MFS_1 155 yilaivsllafvlfllll.peepperkrkspkeeekgtgpaplvpawkallkdpvlw.....illialllfffgfsg..lltllplylqevlglsglll 245
                  i ai+++++  +  +++ ++++++ +++   +      ++pl+p   + +k+p ++     i + +l +   g+s+  ++ ++ +++qev   +  l+
  CDO70615.1 213 RIWAIMTCVSTGI--AFYgVRPRVPMAKFQFGQ------RRPLAP-RLEYFKSPLFLsfthsITWQSLTCLIQGLSYfpVSLYIATFTQEVS-TP--LT 299
                 **********443..555155555555554443......699999.7788888877434454444444444444444447777777744443.33..66 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla..ppeeagtasglfn 342
                 a+++l+l+  +g+++++++g+l dr+    ++++ l+++  a+++++l++++s ++l++ + v++G  +g +++ + ++a+d a   pe+a   ++ + 
  CDO70615.1 300 ATVALSLFNSAGVVGQVILGYLTDRVAY--PWVMLLSSVGSALAAFFLWGFASGPALIYPFAVIFGALSGGFSSVWPNAAVDCAgrKPENADITYAGTA 396
                 6666999999999************777..9999999999999999999999888888889999***99999999999999999654466666666666 PP

       MFS_1 343 tagslggalgp 353
                 ++ ++++++gp
  CDO70615.1 397 MFKGISAVIGP 407
                 99999999998 PP

  == domain 3  score: 27.8 bits;  conditional E-value: 6.5e-11
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgag 100
                 l++ ls++  s+++++++    ++   +p ++  +l+l+  + +v++++lG+l+dr+   +v+ll+ +++al++++l+ fas+  l++ + v+ G+ +g
  CDO70615.1 274 LIQGLSYFPVSLYIATFT----QEVS-TPLTATVALSLFNSAGVVGQVILGYLTDRVAYPWVMLLSSVGSALAAFFLWgFASGPALIYPFAVIFGALSG 367
                 455556666666666665....5555.8888**************************9999************88888897553366666666666666 PP

       MFS_1 101 alfpagaaliadwfpk..eergraigllsagfslGailgpllggllassl 148
                 ++ ++   +++d + +  e+    ++  +++ +++a++gp+++g+l++ +
  CDO70615.1 368 GFSSVWPNAAVDCAGRkpENADITYAGTAMFKGISAVIGPIVSGILLETG 417
                 66666666666666553237777778888899**************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3341.21
//
Query:       CDO70616.1  [L=950]
Description: hypothetical protein BN946_scf184748.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   72.7   0.1    6.7e-20   71.7   0.1    1.4  1  Pil1      Eisosome component PIL1
  ------ inclusion threshold ------
      0.065   13.6   0.4       0.14   12.5   0.4    1.5  1  DUF3510   Domain of unknown function (DUF3510)


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   7.5e-24   6.7e-20      57     261 ..      28     243 ..       3     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 7.5e-24
        Pil1  57 rrLakLikseknlvraheaaarerksiakqlseWGedtdddvsDvsDklgvllselgeledayadrldqsRatlKsirniEasvqpsRdkkekladeia 155
                 r L+ Li++ek ++++ +  + + +++a++l  WG  + dd+sD     + ll  +++    ya +    R ++K++r  E+s++  + +++ l  + +
  CDO70616.1  28 RALQDLITAEKGIMNSLQRLSADFTKAAEALKIWGLGEGDDLSDTLSASTTLLLHFSSALAVYASHEVTVREHMKAVRSREESLDELKRRRRSLFSDAE 126
                 779*****************************************988888888899999999999999****************998888777765544 PP

        Pil1 156 kl...........kakepqserlvvlEqeLvraeaeslvaeaqlsnitReklkeaytaefdaliEraeKlallarygkrLlellddspvtpGetrpaYd 243
                 +            k+ + q + l +l  e+  ++ + + +ea+l+  +R++ ++ + ++f  l E +eK a++ + gk ++ +++ +p  pG  rp Y+
  CDO70616.1 127 SAerklskmspehKNLQQQTDLLNKLRDEIRVMDTDIMTEEARLGDFKRSSARHLMGLKFGGLLECCEKGAIVGELGKLVIAEIPTAPTEPGLPRPYYT 225
                 3322222224433334555577888999999999999************************************************************** PP

        Pil1 244 gaeatrqiladaedaLre 261
                 g ++t  ++a+a+++++e
  CDO70616.1 226 GHARTEFLVAEAARTIAE 243
                 **********99998765 PP

>> DUF3510  Domain of unknown function (DUF3510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.6e-05      0.14      73     106 ..      92     129 ..      66     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
     DUF3510  73 rYletisevlssvkkteesLkrlkkarkgaaas....a 106
                 +   t++e+++ v+  eesL  lk++r++ +++    +
  CDO70616.1  92 SHEVTVREHMKAVRSREESLDELKRRRRSLFSDaesaE 129
                 455689**********************9997754431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 5843.44
//
Query:       CDO70617.1  [L=343]
Description: hypothetical protein BN946_scf184748.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2369.94
//
Query:       CDO70618.1  [L=709]
Description: hypothetical protein BN946_scf184748.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-40  137.7   0.0    1.3e-27   96.8   0.0    2.1  2  Pkinase         Protein kinase domain
    1.9e-20   73.3   0.0    2.7e-20   72.8   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    6.6e-05   21.9   0.0     0.0001   21.3   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.048   13.6   0.1       0.11   12.4   0.1    1.6  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.5e-13   6.5e-10       2      90 ..     149     249 ..     148     260 .. 0.89
   2 !   96.8   0.0     3e-31   1.3e-27      95     260 ..     334     521 ..     326     523 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.5e-13
                 EEEEEEEEESSEEEEEEEETTTTE...EEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..........SSEEEEEEE--TTEBHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgk...ivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..........kdelylvleyveggelad 87 
                 +++ +lG G++G+Vy + +  +g+    +AvKk+++ +  +    ++lrE+++l+kl+hpni+++ +++ e            +l+++++++egg+l+d
  CDO70618.1 149 QEVCRLGMGANGSVYLCQHVLDGNplgYFAVKKVAVGQSHSYLL-NTLREVRLLEKLHHPNIITYHHAWLEsaqfssfgprIPTLHILMQWAEGGSLDD 246
                 56778***************999744469*******99998775.9***********************99999999999888999************9 PP

                 HHH CS
     Pkinase  88 lle 90 
                 ++ 
  CDO70618.1 247 FID 249
                 986 PP

  == domain 2  score: 96.8 bits;  conditional E-value: 3e-31
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE....EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH......TTSCBSHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge....lKitDFGlakelessskltsfvgtseYlAPEvl......keneyskkvDvWs 182
                 ls ee++ ++  +++gl++lH+k+i+H DlKp N+L+  ++g      +++DFG ++ + +  k +  +gt eY APE l      +  ++++k+D+Ws
  CDO70618.1 334 LSAEEVQGLFGDVVAGLAFLHDKSILHLDLKPGNVLLTwDDGSlvprAMLSDFGTSQDMLNARKRSGNTGTLEYAAPESLpvpttgQLLQVDSKADMWS 432
                 78899999******************************8888899999**********************************997666889******** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS............-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei............seeakdllkkllkkdpkkRltaeellq 260
                 lG+il +ll+ + p++ +++ e+ ++  d  +++++ l  + + +p  ++             ++  + ll++ll+++p+ R++ae +l+
  CDO70618.1 433 LGMILHKLLFFRLPYRYSSDCEDPSRPKDG-KEFADRLAAEILRYPGFKSSqsmvttfesrrlPRAYLYLLENLLHVKPSVRMSAERVLN 521
                 ****************88777766655555.44444444334444444433444556666677***********************9987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0     6e-24   2.7e-20       6     200 ..     153     442 ..     148     467 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 6e-24
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS..........EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeep..........llivteyvkgGdLlkfLr 93 
                  +lG Ga G+V+ ++    + +     avK++  +++++   + l+e+++++kl+hpni+ ++ + +++ +          l i++++++gG+L++f+ 
   CDO70618.1 153 RLGMGANGSVYLCQHV-LDGNPLGYFAVKKVAVGQSHSYLLNTLREVRLLEKLHHPNIITYHHAWLESAQfssfgpriptLHILMQWAEGGSLDDFID 249
                  79************99.8999999*****************************************97776777888999999**************** PP

                  HT..............................................................................CTTTSBHHHHHHHHHHHH CS
  Pkinase_Tyr  94 kk..............................................................................ekekltlkdllsfalqvA 113
                   +                                                                              + + l+ +++  +  +v 
   CDO70618.1 250 VRlgrrapnlhhipngsqspsspaassspgqpvsrnarlrairalhrappeererlrcelglggygaqgsgsrrgpadwkAVHLLSAEEVQGLFGDVV 347
                  ******************************************************************************98788899999999****** PP

                  HHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE......EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 114 kGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk......ftsksDvWsfGvllwEift 200
                  +G+++L++k+++H dl   NvLl+         + +sDfG ++d+    + +k+++++  +++ apEsl   +      + sk+D+Ws G++l+ ++ 
   CDO70618.1 348 AGLAFLHDKSILHLDLKPGNVLLTWddgslVPRAMLSDFGTSQDM---LNARKRSGNTGTLEYAAPESLPVPTtgqllqVDSKADMWSLGMILHKLLF 442
                  ***********************975554445789*********9...77889999999*********987666677889************998765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.2e-08    0.0001     311     384 ..     342     411 ..     331     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.2e-08
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaie 384
                      + D+++g+  L+ ++ iLH D   +N+l+t ++    ++ +L+D+    ++ + +++sg    tGTle+ a e
      CDO70618.1 342 LFGDVVAGLAFLH-DKSILHLDLKPGNVLLTWDDGSLVPRAMLSDFGTSQDMLNARKRSG---NTGTLEYAAPE 411
                     578**********.*****************8888899**************98777777...8****998865 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.4e-05      0.11     102     186 ..     291     376 ..     152     388 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
                 HCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH............................HHHHHHHH--S...SS-EEEE CS
         APH 102 laalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeq............................vlaalaallpg...elptvll 169
                 ++alh+++p+                              ++ ++++e                              v   + + ++g     ++++l
  CDO70618.1 291 IRALHRAPPE-----------------------------ERE-RLRCELGlggygaqgsgsrrgpadwkavhllsaeeVQGLFGDVVAGlafLHDKSIL 359
                 2244444322.............................222.2222222444444444444443333333333233255555555555777999**** PP

                 -SS-SGGGEEEC..TTE CS
         APH 170 HgDlhpgNllvdpddgr 186
                 H Dl+pgN+l++ ddg 
  CDO70618.1 360 HLDLKPGNVLLTWDDGS 376
                 ***********955454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 5163.32
//
Query:       CDO70619.1  [L=173]
Description: hypothetical protein BN946_scf184748.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1283.05
//
Query:       CDO70620.1  [L=293]
Description: hypothetical protein BN946_scf184748.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-42  145.0   0.0    3.1e-42  144.8   0.0    1.0  1  Pkinase      Protein kinase domain
    1.2e-28  100.1   0.0    1.5e-28   99.8   0.0    1.0  1  Pkinase_Tyr  Protein tyrosine kinase
    0.00044   19.7   0.0    0.00057   19.3   0.0    1.1  1  Kinase-like  Kinase-like
     0.0017   17.8   0.0     0.0026   17.2   0.0    1.2  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.086   12.7   0.6       0.16   11.9   0.1    1.7  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   8.7e-46   3.1e-42       1     252 [.      21     274 ..      21     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 8.7e-46
                 EEEEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS..- CS
     Pkinase   1 yekleklGeGsfGkVykaveket.gkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgs..l 95 
                 y+ +++lG Gs+G+Vy+a+e++  + +++   ik+ +    ++++ lrEi+++  +  h+n+v l ++f+e + ly+v+++++gg+l +++++k++   
  CDO70620.1  21 YQLIKRLGAGSYGVVYRARERDLlSGHYVPRAIKVLSLHWGHRNSHLREITMHSMVTgHDNVVGLHRAFREGNFLYIVMDLLDGGDLRTHISKKRTlcR 119
                 78899**************998425566666666666666666778**********************************************7777224 PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCB.SHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvl........keney.skkvDvWslG 184
                 +++ +++++ qi+ g++ +H+ g+ HrDlKpeNi+++++   + i+DFGl++ ++ s+  +  +g+++Y++P           +  +y +  +D W+lG
  CDO70620.1 120 NDALIRNVFLQIIDGVQACHDVGVYHRDLKPENIFVNSDLTrVCIGDFGLSTDATAST--SFNTGSRHYMSPDCGvecvdcgdELYPYnTLRSDTWALG 216
                 555789*******************************66656*************987..6778********6544555886544677799******** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkR 252
                 ++l++++tg  p++  + ++   k+++        l+ ++ +l +   is+e+  +l+++++  p +R
  CDO70620.1 217 ILLLTIVTGYIPWNRATIDD---KNFRA------FLE-QEDHLLTVFPISKELNGILRRIFTIIPGRR 274
                 **************444333...33333......222.244444555566676666666666666666 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   4.1e-32   1.5e-28       2     250 ..      22     275 ..      21     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 4.1e-32
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  +l k+lG+G++G V++++ ++  + + v  a+K+l+ +  ++  ++ l+e+++ + +  h+n+v l+ +  +++ l+iv+++++gGdL++++ kk ++
   CDO70620.1  22 QLIKRLGAGSYGVVYRARERDLLSGHYVPRAIKVLSLHWGHR--NSHLREITMHSMVtGHDNVVGLHRAFREGNFLYIVMDLLDGGDLRTHISKK-RT 116
                  5789*****************99************7666665..8999****999999************************************9.55 PP

                  TSBHHHHH.HHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.....EEHHHHHH CS
  Pkinase_Tyr  99 kltlkdll.sfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.....ftsksDvW 189
                   ++ + l+ ++ lq+ +G++  ++  + Hrdl   N++++++   v i+DfGL+ d  + ++  ++++++     + +E+++ +       t +sD W
   CDO70620.1 117 LCRNDALIrNVFLQIIDGVQACHDVGVYHRDLKPENIFVNSDLtRVCIGDFGLSTDA-TASTSFNTGSRHYMSPDCGVECVDCGDelypyNTLRSDTW 213
                  5555555437899***************************98758***********9.55555555555555556666666665589997899***** PP

                  HHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypgl..kneevleklkegkrlekpekcpeelyelmkkcweedpeeRp 250
                  + G+ll  i+t g  p+++   +++++ ++l+++ +l +   +++el+ ++++ ++  p +R+
   CDO70620.1 214 ALGILLLTIVT-GYIPWNRAtiDDKNFRAFLEQEDHLLTVFPISKELNGILRRIFTIIPGRRA 275
                  ***********.****98765589999************999********9999988888886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   0.00057     146     254 ..     125     233 ..      97     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
  Kinase-like 146 rlllTlqlirlaanLqakglvhgkftvdnllldek.gglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyr 242
                  r +  lq+i  ++  ++ g+ h +++++n++ + +  ++ +g+f+    a ++   ++  + +  p+   +    + +     t   d+W+lG+  + 
   CDO70620.1 125 RNVF-LQIIDGVQACHDVGVYHRDLKPENIFVNSDlTRVCIGDFGLSTDATASTSFNTGSRHYMSPDCGVECVDCGDELYPYNTLRSDTWALGILLLT 221
                  4444.79***********************99987469******9666666666779999******99888777888888899*************** PP

  Kinase-like 243 iwclklPltlat 254
                  i   ++P + at
   CDO70620.1 222 IVTGYIPWNRAT 233
                  ******988765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.1e-07    0.0026      98     166 ..     101     167 ..      91     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.1e-07
         Kdo  98 rlegaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  l+g  dL +++ k ++   +++l r+ + ++   ++  h++gv+H+dl + ni+++ +     ++++ D+
  CDO70620.1 101 LLDG-GDLRTHISKKRTlcRNDALIRNVFLQIIDGVQACHDVGVYHRDLKPENIFVNSDL---TRVCIGDF 167
                 4444.58999999988888889999999999*************************9886...67776666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.99   3.6e+03     157     179 ..      64      95 ..      35     109 .. 0.59
   2 ?   11.9   0.1   4.4e-05      0.16     167     197 ..     142     171 ..     113     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.99
                 HHH--S.........SS-EEEE-SS-SGGGEE CS
         APH 157 aallpg.........elptvllHgDlhpgNll 179
                   +l+          ++  v lH+ ++ gN+l
  CDO70620.1  64 NSHLREitmhsmvtgHDNVVGLHRAFREGNFL 95 
                 33333344444444555556667777777766 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.4e-05
                 EEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++ H+Dl+p N+ v++d +rv ++ Df++++
  CDO70620.1 142 GVYHRDLKPENIFVNSDLTRV-CIGDFGLST 171
                 677*****************9.777999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2173.17
//
Query:       CDO70621.1  [L=128]
Description: hypothetical protein BN946_scf184748.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 947.84
//
Query:       CDO70622.1  [L=443]
Description: hypothetical protein BN946_scf184748.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-15   55.3  27.3    3.9e-14   53.1  27.3    2.0  1  FA_desaturase  Fatty acid desaturase
    3.3e-07   30.6   0.0    5.9e-07   29.8   0.0    1.3  1  DUF3474        Domain of unknown function (DUF3474)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1  27.3   4.4e-18   3.9e-14       2     247 ..      90     375 ..      89     381 .. 0.71

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 4.4e-18
  FA_desaturase   2 swlalllalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHay.tngpdeDpdlaplal..srfeglfr 94 
                     w++++   + g+  ++  +++aHe++Hg+l+    +++w+n++lg ll  +++ +++aw+++ ++  +  ++ p    ++    l  + +++ + 
     CDO70622.1  90 LWMIYW--WWQGIA-FASFFCIAHELGHGTLY----KSWWANNILGFLLDTFVLAPFFAWKKAVNSIERDeNYVPHLRSHYK---LppKERSSTAD 175
                    599999..999999.55547************....99***********************986555554444444444444...03333333333 PP

  FA_desaturase  95 y....................llrlllgllvlgwllalvlgl....wlrrlarrrapsksrrrk..wrllawlllllawlglwlalllllglall. 163
                    y                    + ++l++++++         l    + ++  +++  s+ +++     ++   + l++ + l+++++ + g+ +l 
     CDO70622.1 176 YaevleetplftmvrlfvmqaMGWWLYLTFNM---------LgskmYPKGTNHFSPYSALFKKEqrLGIVISDIGLIGMMYLLYLFAQAYGWTALi 262
                    35555555433322223334333333333333.........3333355555555555555555433334444444444433333333334444445 PP

  FA_desaturase 164 .lwlvplllllfllalvl..................nyveHyg........gdwgerqvetsasir.saswllnlltgnln.yHieHHlfPgvpwy 230
                     ++++p+++++ l ++                    ++++H+         ++w   +++ s+  r + +w+ +++++n    H++HH+f  vp+y
     CDO70622.1 263 mYYVFPYMVGNLLQQRGIeadstlrssviigsvlmiTFLHHSDptiphyrkEEWSFLRGAASTVDRpTLGWIGRFFFHNVAhDHVAHHFFSHVPFY 358
                    8*****99999999988899999999999999999999999999*****9******************************999************* PP

  FA_desaturase 231 rLpelhrrlrellpehg 247
                    + p+++++++ +l++++
     CDO70622.1 359 NQPAVTEAIKTVLGANY 375
                    ***********999854 PP

>> DUF3474  Domain of unknown function (DUF3474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.6e-11   5.9e-07      91     129 ..      14      52 ..       3      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6.6e-11
     DUF3474  91 DpgaPPPfkLadiraaiPkhCWvkdpWrsmsyvvrDvvv 129
                  p aPP  +L ++++a+Pkh   kdp rs  yv+rDv  
  CDO70622.1  14 RPFAPPTITLKQLHEAVPKHLLRKDPIRSTGYVLRDVFF 52 
                 588*********************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3349.07
//
Query:       CDO70623.1  [L=571]
Description: hypothetical protein BN946_scf184748.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-28   98.1   0.0    2.8e-27   95.9   0.0    2.2  1  Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
     0.0089   16.3   4.5      0.081   13.2   1.2    2.5  2  CBM_6         Carbohydrate binding module (family 6)


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   3.2e-31   2.8e-27       1     168 []     381     562 ..     381     562 .. 0.81

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 3.2e-31
                   EEEEE--S-.S.......SS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEETTE.EEE-HHHHHHHHHHHS--SEEEE CS
                   xxxxxxxxx.x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds.p.......glleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliwdngkvvgtpsYyvqklfsknaggtvlp 89 
                   gEya+ +++ +       +++    t+++A +eAaf+tglern+D+V  asyApl+++++ tqW  +l+ d       p +  ++lfs n+g+++lp
    CDO70623.1 381 GEYAAISTNaNdifgtpaDGRLTFPTMQSASGEAAFMTGLERNSDIVFAASYAPLLQHVNSTQWL-LLCPD-------PGFDLIRLFSLNRGDQYLP 469
                   8999997776256666556666667***********************************99995.44444.......55***************** PP

                   EEEE--EE.......EEEEEET.............SS--EEEEEEETT-.-SEEE.EEEEEE-STT----SSSTTSSEEEEEEE.EE-E..EEEEE- CS
                   xxxxxxxx.......xxxxxxx.............xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  90 velespky.......eikgege.............aeeavevevdleglekaska.evtvlsgdlkaeNtfenpekvvpkeeklakvsggkftytlp 165
                   ++l +          +                    ++a +++++l++++++++a + + l+g+ +a Nt ++pe++vpk++++   +g++fty++p
    CDO70623.1 470 STLPTRGDtlhwsitR-----SsssgqtfikvanaGSSAESITFQLNQFGSVASAgTLQLLTGAETASNTPDAPETIVPKTSTI--RTGKSFTYDAP 559
                   ***9555435775552.....0334557899999956678999999999888888466666******************99999..44567****** PP

                   TTE CS
                   xxx RF
  Alpha-L-AF_C 166 ayS 168
                   a+S
    CDO70623.1 560 AFS 562
                   *98 PP

>> CBM_6  Carbohydrate binding module (family 6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.2     9e-06     0.081      21     104 ..      86     168 ..      78     191 .. 0.82
   2 ?    3.4   0.1      0.01        90      29      68 ..     474     512 ..     471     537 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9e-06
                 TSEEEE---TT-E.EEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESSTTSSEEEEEEE---SSTTEEEEEEEEEEE-SEEEEE CS
       CBM_6  21 ggkavgyinnGdw.laYkdvdfgsggaysvearvasgaaggsielrldsatgtlvgtvsvpstggwqtyvtvsanvtlptGvhdl 104
                   ++vg+ n+G w + ++      ++++ +++  asg +g ++++ l   +g++++++s+++ g+ +++++v  ++  ++  +d+
  CDO70623.1  86 ATGQVGFSNEGFWgINVN-SSWTYNASFFFRFPTASGFSG-ALTVGLQTSSGKVLAQTSTQVHGSTTKWTQVNLKLRPTASASDV 168
                 567888888998844444.777777888888888888885.9999999999*********************9999988877666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.01
                 -TT-EEEEEEEEESSTEEEEEEEEEEESSSEEEEEEEESS CS
       CBM_6  29 nnGdwlaYkdvdfgsggaysvearvasgaaggsielrlds 68 
                 + Gd l ++ +   s++ +++   +++g++++si+++l+ 
  CDO70623.1 474 TRGDTLHWS-ITRSSSSGQTFIKVANAGSSAESITFQLNQ 512
                 579999***.6555655558887777777779***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3973.99
//
Query:       CDO70624.1  [L=905]
Description: hypothetical protein BN946_scf184748.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-13   48.7   0.2    9.2e-12   44.9   0.2    2.3  1  Lactamase_B_2  Beta-lactamase superfamily domain
    1.3e-07   31.2   0.0    3.7e-07   29.7   0.0    1.8  1  Lactamase_B_4  tRNase Z endonuclease
  ------ inclusion threshold ------
      0.015   15.3   0.3      0.071   13.1   0.3    2.2  2  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.2   1.5e-15   9.2e-12       2     201 .]     604     837 ..     603     837 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.5e-15
                    EEEES--TTHHHH.HTCGG.S--S...SS--..SEEEEE-SS--HHHHGGGGCCCC....C--EE.EEEEEEHHHHHHCCTTCGHHHCHTT..... CS
  Lactamase_B_2   2 riLiDagpdlrqq.alral.qPve...lrdelppidaVllthaHyDHlaglltlre....lrpkk.lplyapkgvlavleanfvylaleee..... 82 
                    +iL+D+g ++ +q a++    P++    ++ l++++ ++l+h H DH  gl  +      + p    ply+  g++++l   + +  le +     
     CDO70624.1 604 NILLDCGEGTWGQlARSFGnDPARtggVWQVLRDLKCIFLSHMHGDHHMGLSKILLmrtlMNPPPsEPLYVV-GLRSHLMYLTERQELEDAglsdp 698
                    8********99996444446777666799*******************998776553345333334555532.33333333333333333355577 PP

                    ........TTEEEEEE-TTSEEEE............CSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEE.CTTEEEEEESS-S---HHHHHHHCT- CS
  Lactamase_B_2  83 ........pavnvheldwgesfel............gdggleitatparhksgrrldrnagdtlGlrie.gggkrvyyigDtgyipeeigerlgga 157
                            + +n++  ++  + +l            ++++  ++a  ++++++  +  ++ +++G +i+ ++g +v++++Dt  ++  ++   ++a
     CDO70624.1 699 ngvvlilsDVLNWRGPKPYSRSALvdepfmdfdaarQNAQAMCRALGLQSFTAV-DVVHRIRCYGCVIRhEDGWSVAFSADTMPTENLVR-AGRDA 792
                    888788887777777775555555444444477776333444566666666665.77777899********************9997776.8899* PP

                    SEEEEE-S-SSTTHHHH.HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 158 dllllditayeddemir.hmgHltpeeaveaaadlgakrlvliHi 201
                     ll++++ +  ++e  + +  H+t  +a+++ +++ a+rl+l+H+
     CDO70624.1 793 TLLIHEASMSPEEEQLArEKAHSTSAQAIDIGKRMHAQRLLLTHF 837
                    ********9988887779**************************7 PP

>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   6.1e-11   3.7e-07       1      55 [.       7      59 ..       7      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 6.1e-11
  Lactamase_B_4  1 qvvttptsDtsgPlllLqldskrYlfGkvgEgtQRavneqkvrlsklesiFLtgk 55
                   +v++ +tsDt+ P+l++++d+ +Y++ + +E t Ra  ++++++ + ++ FLt  
     CDO70624.1  7 SVLSEATSDTE-PTLVVAFDTGKYII-NASEATGRAWLQSHHSFRRSKGLFLTAA 59
                   58999******.**************.*************************975 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   1.2e-05     0.071       5      63 ..     591     656 ..     587     659 .. 0.78
   2 ?   -3.6   0.0       1.6   9.6e+03     144     162 ..     772     790 ..     768     808 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
                  SSEEEEEE.ETTCEEEES--SCHHHHHHHH...HHHHHT...SGGGGEEEEE-SBSSHHHHTTGGG CS
  Lactamase_B   5 pvnsylie.gdggviLiDtGtsteaaraal...elaalg...lkpkdvdavilTHlHlDHiGglgg 63 
                  +v+ +li+  + g+iL D+G +t  ++a++   ++a+ g     ++d++ ++l+H+H DH  gl +
   CDO70624.1 591 NVSGTLIQiPGRGNILLDCGEGTWGQLARSfgnDPARTGgvwQVLRDLKCIFLSHMHGDHHMGLSK 656
                  6777899977899999999999999999889985555551114579**************888865 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
                  CEEEECTTTSSHHCCCCCC CS
  Lactamase_B 144 kvlftGDallagetgridl 162
                  +v+f+ D+ ++++ +r ++
   CDO70624.1 772 SVAFSADTMPTENLVRAGR 790
                  5899999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 5843.61
//
Query:       CDO70625.1  [L=362]
Description: hypothetical protein BN946_scf184748.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.043   14.1   0.0    1.9  1  DUF11     Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-06     0.043      16      79 ..     220     331 ..     215     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-06
       DUF11  16 vtytltvtNtgpasangvvvtDtl................................................Paglayvsvsasqgtasaltsv.gsLe 65 
                 +ty++ v N+++++++g + +D+                                                 P + ++vs+sas gta+   s+ + ++
  CDO70625.1 220 MTYVINVENNSTKTLAGPTTKDPKaqyaasitalvqldstgavsfipykqgddstnakaawanvakiaaaapPGSSSAVSGSAS-GTATGVHSSgTGVP 317
                 79********************99***************999999999999999999999999999999996666778888888.66655555555566 PP

       DUF11  66 agesatlsftvrvt 79 
                  g     +++++ +
  CDO70625.1 318 SGTIQSGAASPTSS 331
                 66555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2434.24
//
Query:       CDO70626.1  [L=417]
Description: hypothetical protein BN946_scf184748.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-47  161.6   0.0      3e-47  161.2   0.0    1.1  1  Pkinase          Protein kinase domain
      7e-27   94.3   0.0      9e-27   94.0   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
    1.5e-05   25.0   0.2    0.00094   19.2   0.0    2.2  2  APH              Phosphotransferase enzyme family
    0.00029   20.2   0.0    0.00046   19.6   0.0    1.2  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0036   16.6   0.0      0.018   14.4   0.0    1.9  2  Kinase-like      Kinase-like
     0.0084   15.1   0.1      0.012   14.6   0.1    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
  ------ inclusion threshold ------
        0.1   12.2   0.0        0.2   11.2   0.0    1.4  1  Choline_kinase   Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   1.2e-50     3e-47       4     258 ..      23     277 ..      20     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 1.2e-50
                 EEEEEEESSEEEEEEEETTTT...EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHSS-- CS
     Pkinase   4 leklGeGsfGkVykaveketg...kivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle..rkgsls 96 
                 + +lG+Gs+G+++ a + ++g    ++AvK++ +  ++ ++ +  ++Ei+++++l+ hpn+v+l +v+eek +++lvl+y++gg+l+++l+  r+   +
  CDO70626.1  23 VDTLGSGSNGVIFLAEDVQSGpipTQYAVKCVVRAAKSTRRYTLQRQEIHFHRQLSyHPNVVTLHKVIEEKYYVFLVLDYCSGGDLFNFLQhrRDYRGD 121
                 679*************9999844457*******999999999999**********************************************64444466 PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCB.SHHHHHHHHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvl....keney.skkvDvWslGvilye 189
                 ++ +k ++ qil +l+ +H++gi HrDlKpeNiLi+e+++ + +tDFGla+   +s+  t   g+s Y++PE +    ++  y  ++ DvW+lGvi+ +
  CDO70626.1 122 DAFVKLLFLQILDALAACHAAGIYHRDLKPENILISEDAQhIYLTDFGLATPNLESK--TFGAGSSLYMSPECIgvhpSRPAYsPRANDVWALGVIFTS 218
                 77889*******************************55555*********9877655..899************99987777856789*********** PP

                 HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 190 lltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 +++g++p+++   ++  ++           l+ ++  l     is++a  ll+ +++ +  +R+t +++
  CDO70626.1 219 IISGHNPWNQACLTDACYRA---------YLR-NDRFLIDMLPISPSANLLLQHIFRHESIRRITLTQI 277
                 *********44433322222.........222.233344455679999999999999999999999987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   3.5e-30     9e-27       1     256 [.      20     278 ..      20     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 3.5e-30
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH.HHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle.eakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  l+l ++lG+G+ G ++ ++   ++    ++ avK++ + a+++++  l + e+++ ++l  hpn+v l+ v+ ++  +++v++y++gGdL +fL++++
   CDO70626.1  20 LKLVDTLGSGSNGVIFLAEDV-QSGPIPTQYAVKCVVRAAKSTRRYTLQRqEIHFHRQLsYHPNVVTLHKVIEEKYYVFLVLDYCSGGDLFNFLQHRR 116
                  57889*************999.8889999*******998888888887766*********************************************95 PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE....EE.HHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk....ft.sksDv 188
                  + + +   +  + lq+ ++++  ++  + Hrdl   N+L+se+  ++ ++DfGLa         ++k+ +  +  +m+pE++  +     ++  + Dv
   CDO70626.1 117 DYRGDDAFVKLLFLQILDALAACHAAGIYHRDLKPENILISEDAqHIYLTDFGLATPN-----LESKTFGAGSSLYMSPECIGVHPsrpaYSpRANDV 209
                  55555555556789***************************96549*********976.....778888889999*******87666677552678** PP

                  HHHHHHHHHHHTTSSGTTTTS.HHHHHH.HHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypgl.kneevl.eklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  W+ Gv+   i++ g++p+++   +  ++ ++l++++ l     ++++ + l+++ ++++  +R t+++++
   CDO70626.1 210 WALGVIFTSIIS-GHNPWNQAcLTDACYrAYLRNDRFLIDMLPISPSANLLLQHIFRHESIRRITLTQIR 278
                  ************.*****9984333334144466666777777888888889999999999999998886 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0086        22      28     105 ..      58     139 ..      30     142 .. 0.66
   2 !   19.2   0.0   3.7e-07   0.00094     152     198 ..     132     173 ..     121     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0086
                 E-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS........HHHHHHHHHHHHHHHHHHCCH CS
         APH  28 npparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr........klsaaqlpellealgeflaal 105
                 +   r +   r+e ++ r+L+ +    P v+ + +  ee++++f+++ y+ g +l +        + ++a  + l+ ++ ++laa 
  CDO70626.1  58 AKSTRRYTLQRQEIHFHRQLSYH----PNVVTLHKVIEEKYYVFLVLDYCSGGDLFNflqhrrdyRGDDAFVKLLFLQILDALAAC 139
                 33335555556777777777777....66677778999*******************65555444444444444444555555555 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.7e-07
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +l+alaa      ++++ H+Dl+p N+l+ +d +++ ++ Df++a++
  CDO70626.1 132 ILDALAAC----HAAGIYHRDLKPENILISEDAQHI-YLTDFGLATP 173
                 44444444....459***************665665.*******986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.8e-07   0.00046     104     171 ..     107     173 ..      90     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.8e-07
         Kdo 104 dLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 dL ++l++ ++   +++  + l+ ++  + a  h+ag++H+dl + nil+ +++   ++i+l D+  a +
  CDO70626.1 107 DLFNFLQHRRDyrGDDAFVKLLFLQILDALAACHAAGIYHRDLKPENILISEDA---QHIYLTDFGLATP 173
                 556666655554445666667777888889999******************998...9******976665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.26   6.7e+02      14      37 ..      20      43 ..      16      77 .. 0.76
   2 !   14.4   0.0   6.9e-06     0.018     147     251 ..     126     227 ..     106     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.26
  Kinase-like 14 lvrgellkkgdrsvvfevkdqetg 37
                 l+ ++ l+ g ++v+f+++d++ g
   CDO70626.1 20 LKLVDTLGSGSNGVIFLAEDVQSG 43
                 788999**************9976 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.9e-06
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekg.glmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                  +ll lq++   a  +a g+ h +++++n+l  e+   ++l++f+      ++         +  pE +g     ++ + + +  + d+W+lG+   +i
   CDO70626.1 126 KLLFLQILDALAACHAAGIYHRDLKPENILISEDAqHIYLTDFGLATPNLESKTFGAGSSLYMSPECIGV----HPSRPAYSPRANDVWALGVIFTSI 219
                  45669999999********************9986269*****9666665655557788999*******9....6779**************999999 PP

  Kinase-like 244 wclklPlt 251
                   + + P +
   CDO70626.1 220 ISGHNPWN 227
                  88877765 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.7e-06     0.012     248     320 ..      96     164 ..      60     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.7e-06
  Pox_ser-thr_kin 248 iifPLarcsadkvkeeiaaelGfaslveyikfifLqiaLLyikiyelpdcenflhvDlkPdniLifdskekli 320
                      + + L  cs  ++ + + ++  +     ++k +fLqi   +             h DlkP+niLi ++ +++ 
       CDO70626.1  96 VFLVLDYCSGGDLFNFLQHRRDYRGDDAFVKLLFLQILDALAAC----HAAGIYHRDLKPENILISEDAQHIY 164
                      55667778888888888888889999999*****9986555444....345689***********99887765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-05       0.2     149     178 ..     146     175 ..     132     181 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
                     -S--SGGGEEE.-CTTEEEE--GTT-EEEE CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYagyny 178
                     H Dl ++Nil +++ ++++l DF  a++n 
      CDO70626.1 146 HRDLKPENILISEDAQHIYLTDFGLATPNL 175
                     99**********************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2912.78
//
Query:       CDO70627.1  [L=434]
Description: hypothetical protein BN946_scf184748.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-51  173.6   0.0      8e-51  172.9   0.0    1.3  1  Pkinase      Protein kinase domain
    8.1e-33  113.8   0.0    1.1e-32  113.4   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    4.7e-05   22.8   0.0      0.001   18.5   0.0    2.2  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.021   13.9   0.0      0.033   13.2   0.0    1.2  1  DUF5575      Family of unknown function (DUF5575)
      0.079   12.3   0.1       0.14   11.5   0.1    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
       0.15   12.0   0.1       0.41   10.5   0.0    1.6  2  APH          Phosphotransferase enzyme family
       0.19   11.3   0.0        1.3    8.6   0.0    2.0  2  FTA2         Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.0   3.1e-54     8e-51       3     258 ..      24     284 ..      22     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 3.1e-54
                 EEEEEEEESSEEEEEEEETTTT........EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHH.HHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketg........kivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggelad.ller 91 
                  +e lGeG++G+V++a+++++         +++AvK++++ + + ++ +  +rE++ + ++  hpniv + +vfe +  +y+vley+ gg+l++ +le+
  CDO70627.1  24 LVEILGEGAYGVVFRAIDETSPtssacpepRQFAVKIMERADSRTRRWRYQQREVAAHLTVAdHPNIVSVHDVFECEFFIYIVLEYCVGGDLFNpMLEN 122
                 5789*************876432223333389**************************99999****************************87725555 PP

                 HSS.--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCB.SHHHHHHHH CS
     Pkinase  92 kgs.lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvl....keney.skkvDvWsl 183
                 ++   +++ +k+++ q+l +++y+H++gi HrDlKp+NiL +e+g  +K++DFGl++ ++ s      +g+++Y++PE +    + ++y ++++D+Wsl
  CDO70627.1 123 RVYcRNDALVKSVFVQLLDAVQYCHNHGIYHRDLKPDNILTNEDGSeIKLADFGLSTIAKFSD--AFGCGSQNYMSPECIgedyDFHPYsTEASDIWSL 219
                 55435666889*******************************88888************9987..889************754444899899******* PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 184 GvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 Gvil +l++g++p+   +         d+  ++++ l +    l+e   is+ea ++l+ +++ dp  R+t + l
  CDO70627.1 220 GVILTNLIAGRNPWDYASI-------NDR--SFMRYLAN-PGYLREILPISQEASNVLQAVFTTDPGLRITLNAL 284
                 ***************2222.......222..22333322.2345556678********************98766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   4.1e-36   1.1e-32       2     258 ..      23     287 ..      22     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 4.1e-36
                  EEEEEEEEESSEEEEEEEEET....TTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg....ekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                  +l + lGeGa+G V+++  ++    +   +  + avK++++  ++++  +   +e++   ++ +hpniv+++ v   e  ++iv+ey+ gGdL + + 
   CDO70627.1  23 RLVEILGEGAYGVVFRAIDETsptsSACPEPRQFAVKIMERADSRTRrWRYQQREVAAHLTVaDHPNIVSVHDVFECEFFIYIVLEYCVGGDLFNPML 120
                  67899************9999776555667899******765555551444445766555555********************************999 PP

                  HTCTTTSBHHHHH.HHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.....EEH CS
  Pkinase_Tyr  94 kkekekltlkdll.sfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.....fts 184
                  ++ +  ++ + l+ s+ +q+ ++++y +++ + Hrdl   N+L +e+   +k++DfGL+          ++  +  + ++m+pE++ e        t+
   CDO70627.1 121 EN-RVYCRNDALVkSVFVQLLDAVQYCHNHGIYHRDLKPDNILTNEDGsEIKLADFGLSTIA-----KFSDAFGCGSQNYMSPECIGEDYdfhpySTE 212
                  99.666666666625789**************************996659*********987.....455666777899*******998888887789 PP

                  HHHHHHHHHHHHHHHTTSSGT..TTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgesp..ypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                  +sD+Ws Gv+l  ++  g++p  y+++++++++++l +   l++   +++e  ++++  +++dp  R t+++l+e+
   CDO70627.1 213 ASDIWSLGVILTNLIA-GRNPwdYASINDRSFMRYLANPGYLREILPISQEASNVLQAVFTTDPGLRITLNALRER 287
                  9**************9.99997778889**********999*****************************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.044   1.1e+02      13      71 ..      21      85 ..      12      99 .. 0.74
   2 !   18.5   0.0   3.9e-07     0.001     149     241 ..     136     224 ..     113     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.044
  Kinase-like 13 tlvrgellkkgdrsvvfevkdqetg......eplavkvfllpseaskkdlerlkeqelairllrg 71
                 +l  +e+l++g  +vvf++ d+         ep++  v +++   s+    r+++ e a++l  +
   CDO70627.1 21 QLRLVEILGEGAYGVVFRAIDETSPtssacpEPRQFAVKIMERADSRTRRWRYQQREVAAHLTVA 85
                 677899*************9986422222338888888899888898888888888888777544 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.9e-07
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekg.glmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviy 241
                    +ql+  +++ +++g+ h ++++dn+l +e+g  ++l +f+    a+ +       + +  pE +g+   +++     +t + d W lG+   
   CDO70627.1 136 F-VQLLDAVQYCHNHGIYHRDLKPDNILTNEDGsEIKLADFGLSTIAKFSDAFGCGSQNYMSPECIGEDYDFHP----YSTEASDIWSLGVILT 224
                  3.899***************************9459*****9766666666667888***********888888....889999******8765 PP

>> DUF5575  Family of unknown function (DUF5575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.033     170     266 ..     263     361 ..     260     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
     DUF5575 170 alkvleGlfrtdpeakvklvfvedkaivetvflltsrtrallrrfpllllvdrlp.Glqge.ldllavlcvdglekarevascltrqdtpsllrfilas 266
                 a +vl+ +f tdp+ ++ l  + ++++    f++t +       + ++  ++  p G  ge ++ l+++   ++ +  + +s +t+   p+  +f++++
  CDO70627.1 263 ASNVLQAVFTTDPGLRITLNALRERVLAVDTFFMTEEEIERGSTYVKIAAATYAPrGTDGElVKQLSIVTDSEAFELLQQSSSITESRIPEEAKFVICA 361
                 668***********************999999999999888889999998888765899995556666666677778888999************9964 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.4e-05      0.14     129     166 ..     141     175 ..     123     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.4e-05
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  +++  h+ g++H+dl + nil ++++    ei l D+
  CDO70627.1 141 DAVQYCHNHGIYHRDLKPDNILTNEDG---SEIKLADF 175
                 567888****************99998...77777777 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   3.1e+03      21      82 ..      54     115 ..      46     129 .. 0.57
   2 ?   10.5   0.0   0.00016      0.41     166     198 ..     149     180 ..     118     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                 --EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE- CS
         APH  21 gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsl 82 
                 +++++++ + a  r+ +   ++ ++ ++L  a+   +  v++     e + + + ++ey+ g +l
  CDO70627.1  54 RQFAVKIMERAdsRTRRWRYQQREVAAHLTVADHpNIVSVHD---VFECEFFIYIVLEYCVGGDL 115
                 677777777774444444455555666665444423333333...44444445666666666555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00016
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +++ H+Dl+p+N+l ++d+ ++  + Df+++++
  CDO70627.1 149 HGIYHRDLKPDNILTNEDGSEI-KLADFGLSTI 180
                 6889************777776.6777777765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   4.6e+02      23      41 ..      21      39 ..      15     100 .. 0.83
   2 ?    8.6   0.0   0.00049       1.3     173     206 ..     131     164 ..     102     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
        FTA2 23 diefleyLgkglhsiVlkv 41
                + +++e+Lg+g+ ++V+++
  CDO70627.1 21 QLRLVEILGEGAYGVVFRA 39
                678999**********997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00049
        FTA2 173 levsqlpkllrdlkklhklgIvvrDlkeenyidg 206
                 l  s + +ll+ ++  h++gI++rDlk++n++ +
  CDO70627.1 131 LVKSVFVQLLDAVQYCHNHGIYHRDLKPDNILTN 164
                 556778899*********************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3101.30
//
Query:       CDO70628.1  [L=864]
Description: hypothetical protein BN946_scf184748.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-36  125.0   2.2    7.5e-18   65.0   0.6    2.5  2  BIR       Inhibitor of Apoptosis domain
    0.00028   20.9   0.1       0.12   12.4   0.1    2.6  2  zf-C3HC   C3HC zinc finger-like
     0.0031   17.2   5.0      0.035   13.9   5.0    3.0  1  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> BIR  Inhibitor of Apoptosis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.6   1.3e-21   7.5e-18       1      72 [.       7      94 ..       7      95 .. 0.83
   2 !   59.3   0.0   7.4e-20   4.4e-16       1      72 [.     125     202 ..     125     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.3e-21
         BIR  1 RlatFkkn................WpeskkeakpsaeeLaeaGFyytptseskdnvqCfyCklaldgweedDdpleeHkkhspk.Cefl 72
                Rl++F++                 Wp+     k ++++LaeaGFyytp  e++dnv+Cf+Ck++l +we++Ddp+e H+    + C+++
  CDO70628.1  7 RLDSFSSFskskrtkassskqasrWPHPP-TWKATPNSLAEAGFYYTPGPEDPDNVTCFMCKKSLGSWEPEDDPFEIHYAKCGSvCAWA 94
                566664435667777888888888**876.5589999*****************************************97766449986 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 7.4e-20
         BIR   1 RlatFkk.nWpes.kkeakpsaeeLaeaGFyytptseskdnvqCfyCklaldgweedDdpleeHkkhsp....kCefl 72 
                 Rl+tF+  +Wp++  + +  ++++La+aGF+++  +  +d+v C yC+l+l+gw+ dDdp++eH+k+ +     C+fl
  CDO70628.1 125 RLDTFSLaEWPHDgINGHGANSRALAKAGFVWSAAEPGDDTVICLYCNLSLSGWDADDDPYQEHLKRDKknktPCAFL 202
                 99***7678**6615566788899*****************************************9987443347776 PP

>> zf-C3HC  C3HC zinc finger-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0022        13      16      54 ..      28      71 ..       3      86 .. 0.84
   2 !   12.4   0.1     2e-05      0.12       4      58 ..     119     183 ..     116     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0022
     zf-C3HC 16 alkW.tskpselselkcAkrGWkc....vskdrlkCevCgaslv 54
                a+ W  +  ++ ++  +A+ G+      ++ d ++C +C++sl 
  CDO70628.1 28 ASRWpHPPTWKATPNSLAEAGFYYtpgpEDPDNVTCFMCKKSLG 71
                45576666789999********99666666***********995 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
     zf-C3HC   4 redllrRlkTfkalkW...tskpselselkcAkrGWkcvs....kdrlkCevCgaslvlkl...k 58 
                 ++   +Rl Tf+  +W     +    ++ ++Ak G++  +     d++ C  C+ sl+      +
  CDO70628.1 119 KAMEKARLDTFSLAEWphdGINGHGANSRALAKAGFVWSAaepgDDTVICLYCNLSLSGWDaddD 183
                 555568**********998889999**********9986656889*********99986533433 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   5.0   5.9e-06     0.035       1      12 [.     374     385 ..     374     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
     AT_hook   1 kRkRGRPrKaat 12 
                 kRkRGRP+K+at
  CDO70628.1 374 KRKRGRPPKNAT 385
                 8*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.37s 00:00:01.50 Elapsed: 00:00:00.59
# Mc/sec: 4438.48
//
Query:       CDO70629.1  [L=850]
Description: hypothetical protein BN946_scf184748.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-17   63.9   1.5    5.3e-17   61.7   1.5    2.0  1  WAPL            Wings apart-like protein regulation of hetero
  ------ inclusion threshold ------
       0.13   12.5   0.5       0.39   11.0   0.5    1.7  1  Importin_rep_4  Importin repeat


Domain annotation for each model (and alignments):
>> WAPL  Wings apart-like protein regulation of heterochromatin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   1.5   5.9e-21   5.3e-17       3     363 ..     297     683 ..     295     685 .. 0.71

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 5.9e-21
        WAPL   3 rtlhElreaGenqefvdeveyildgleegqplsvRclSlisLaskcaspqfrrqlrahgiakrlfkalvdapddds.psLalaaaalfyvlssdshd.a 99 
                 +++ Elr  Ge  +f dev y+++gl  +  l vR+ S++++ +k+ + +f r+ +  ++  r  + l +a  +d  ++L +  a    + ++d++d +
  CDO70629.1 297 KSITELRSKGESRRFLDEVGYLFEGLDAKGALGVRRGSALEIVTKMCDVDFARRAKTTDFLGRAWEVLRGAGAGDGdKVLDTTLAFYAALVARDPTDlL 395
                 99*************************99*********************************9999998776555303444444444444566666656 PP

        WAPL 100 dldrssgllrlllkL...Lesdtdivtlakdrktnl.......sksdqksivalveeklratktws.avtpnqlspksLaLetLlsltsk.kaggqfke 186
                 dl  +s+++  l ++   Le  +d   l + +++n         k+  + + +l +  +r+ +     ++++++s ++L  ++L s++ +     q+  
  CDO70629.1 396 DLAAKSDFTFTLHRMlacLERSNDPLWLLSMKADNAelkaagiTKAETTLLSNL-HRLVRKKS--GlFDESDTISSRLLMSQALVSVLPStHRFPQLGA 491
                 666666655554444111444444444444444444556666677777766666.66665544..4456777************998866144455666 PP

        WAPL 187 eLrelGgl.dvvvnvvatclvnllsssseea....kkdtrsdetlsllerclsvLEnvtflseenqayllrlkkkq.........lvikliklLqdiss 271
                  Lr+l     +++++v   +  l+               +++ +l+ l+ cl+   ++ + s + +a+ +  + ++         lv+ l  l    s 
  CDO70629.1 492 LLRTLLSElTLLPSRVDAYVSGLSL-----FpppgPLSHADTPSLLHLDNCLRLFDSCLLGSWSVSAEEV-ETLSVkveelrqrhLVEGLLALCV--SC 582
                 6666666667777777777766654.....03334555555667999******99999988888888777.555555677777777777777774..33 PP

        WAPL 272 qirlenhlaglssarckleeellllalrlllnlTndnpsaceafgsk..kvGaveglisvalslfsnlspryspe.........eks.lDllvlvLgll 358
                  i+ ++ + ++   + +  +++  +alr+l+nlT+d+p+ c+a+  +  ++ av +l+  a ++ + l++++ ++           + lD + l+Lgll
  CDO70629.1 583 AIIQMDGELEG---HRAVAGKCMESALRVLINLTHDDPEWCQAILDQgsSMAAVMQLVIMAHRQRQVLQKQVNADegddadadtAARwLDRMCLALGLL 678
                 44444444444...566679************************98622566777888888887777777776667777999887889*********** PP

        WAPL 359 iNLve 363
                  NLv+
  CDO70629.1 679 TNLVQ 683
                 ***96 PP

>> Importin_rep_4  Importin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   4.4e-05      0.39       9      84 ..     602     676 ..     595     680 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.4e-05
  Importin_rep_4   9 RqsalEllvtlaenaPkmvrkeaefteklvv.qvLslmteveddeeWatsddlddddeedeyvaaeqalDRlalkLG 84 
                      +sal +l+ l+   P+ ++   +  +++   + L +m++ + +    + +   d+ ++ ++++a + lDR+ l+LG
      CDO70629.1 602 MESALRVLINLTHDDPEWCQAILDQGSSMAAvMQLVIMAHRQRQ--VLQKQVNADEGDDADADTAARWLDRMCLALG 676
                     5789****************988877776541346666665444..444444444444447899999********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 5397.50
//
Query:       CDO70630.1  [L=732]
Description: hypothetical protein BN946_scf184748.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-05   23.0   4.4      9e-05   22.3   4.4    1.3  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
    0.00011   22.0   0.0     0.0003   20.5   0.0    1.8  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    0.00059   19.6   5.7     0.0012   18.7   5.7    1.5  1  Prok-RING_4  Prokaryotic RING finger family 4
     0.0026   17.6   5.7     0.0048   16.7   5.7    1.4  1  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
     0.0075   16.2   5.9      0.014   15.3   5.9    1.5  1  zf-RING_5    zinc-RING finger domain
  ------ inclusion threshold ------
       0.15   12.4   6.2        0.3   11.5   6.2    1.5  1  zf-RING_2    Ring finger domain
        1.1    9.1   6.3        2.3    8.1   6.3    1.6  1  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   4.4   3.5e-08     9e-05       4      49 ..     296     345 ..     294     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.5e-08
                 B-TTTSSSBS-.EEETTEEEEEE-HHHHHHHHH....TT-B-TTT--B--E CS
  zf-C3HC4_3   4 eCviClerprn.vvllpCgHlvlCeeCaekllk....rkkkCpiCrrpiek 49 
                 +C++C  ++ + ++l pC H  lC++C+++ l+    ++ +C +C++++++
  CDO70630.1 296 TCSVCGLAKGSlAILKPCSHP-LCSACLTSALNivgeKDMECAMCHTKVDD 345
                 7****999888356669****.**********99**9***********986 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.4   8.6e+03      12      29 ..     362     379 ..     361     380 .. 0.84
   2 !   20.5   0.0   1.2e-07    0.0003       1      65 [.     436     498 ..     436     501 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.4
                 HHHHHHHHHTTSCEEEEE CS
       RRM_1  12 eeeLkelFskfGpiksik 29 
                 e++L ++ +++ +i++++
  CDO70630.1 362 ESKLQRIIEEYSEIEDFD 379
                 889999999999999875 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.2e-07
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklg 65 
                 l + n+p+d+t   + ++++   p++++ +  d++gk+  +afVe+ ++++A++Al++ ++  lg
  CDO70630.1 436 LRIDNVPWDITPPAIAKWLKY--PVERVHVLLDRKGKTLSHAFVEMVDEDAAKAALRSSQNSVLG 498
                 568999999999999999997..8889999999************************98887765 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   5.7   4.7e-07    0.0012       1      42 [.     297     345 ..     297     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.7e-07
  Prok-RING_4   1 CvlCgeq.ekkailepCgHlvCkeCfdsk.dls.....sCPlCqrrisk 42 
                  C +Cg + ++ ail+pC H +C +C+ s+ +        C +C++++++
   CDO70630.1 297 CSVCGLAkGSLAILKPCSHPLCSACLTSAlNIVgekdmECAMCHTKVDD 345
                  999*9873677899************9986333555679*******976 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   5.7   1.9e-06    0.0048       1      41 []     297     339 ..     297     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.9e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC..TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks..rkkvkCPlC 41 
                 C++C         l +C H +Cs+C+++ l+   +k  +C +C
  CDO70630.1 297 CSVCGLAKGSLAILKPCSHPLCSACLTSALNIvgEKDMECAMC 339
                 89998888888899*****************99999999**** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.9   5.6e-06     0.014       2      43 ..     297     340 ..     296     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.6e-06
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll....ekeavCpiCr 43 
                 C++C       + ++l +C+H +C++Cl+ +l    ek+ +C +C+
  CDO70630.1 297 CSVCGLAK--GSLAILKPCSHPLCSACLTSALnivgEKDMECAMCH 340
                 88887777..666999*****************************7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.2   0.00012       0.3       2      43 ..     296     339 ..     295     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst....CPlC 43 
                 +C++C   l +++ ++l+pC+H  +  Cl+  l+   +    C +C
  CDO70630.1 296 TCSVCG--LAKGSLAILKPCSHPLCSACLTSALNIVGEkdmeCAMC 339
                 7****5..5777777777***********88876666666799999 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.3   0.00091       2.3       2      40 .]     297     339 ..     296     339 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00091
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLe...ekn.eCPlC 40 
                 C +C         ++pC H  C+ C+  +L+   ek+ eC +C
  CDO70630.1 297 CSVCGLAKGSLAILKPCSHPLCSACLTSALNivgEKDmECAMC 339
                 888866655555889***********99885332555577666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4821.55
//
Query:       CDO70631.1  [L=379]
Description: hypothetical protein BN946_scf184748.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-23   81.9   0.0    1.2e-22   80.6   0.0    1.6  1  MRJP      Major royal jelly protein
     0.0023   17.6   0.0       0.14   11.8   0.0    2.6  3  SGL       SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> MRJP  Major royal jelly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   1.3e-26   1.2e-22       3     242 ..     116     365 ..     114     379 .] 0.83

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.3e-26
        MRJP   3 vyriavDecdrLWvLDsGi..vntlqqlk.icppkllvfdlatdkllkrvelpadvakknsllvslvVdladdtcddtfvYiaDakgk..gliVYdlad 96 
                 v+ + vD  dr+W LD G   vn    +     pkl+ f l+ ++   ++++pa+v+  +s l+++++dl+     d+f+Y++D+  +  g++V++l++
  CDO70631.1 116 VQSVIVDGKDRIWALDVGRprVNGSTLPAvPGGPKLIGFHLN-GTRFATITFPASVVFADSSLNDVRIDLRG----DGFAYLPDSSPQrpGIVVVNLKT 209
                 67899*************722444444556899********7.566789*********************43....69******986666********* PP

        MRJP  97 dkswRvesn..tfkpdPkfgkltiagesfqlkdG.........ifglalspvtndgrtLYFhplaSeklysVptevLrneslaenn....vsyeefkdl 180
                  +swR   n  +++++ + +++  +  ++  +            f+++  + + dg + Y++pl+ ++l+++pt+ L+ +  a +        + ++dl
  CDO70631.1 210 RQSWRHLDNhpSVTTQVDLVSFHNGVPTYIHPPIspfattpfnRFAADGVALSADGDFFYYAPLSARRLFRIPTSFLKVQPSALDPnailLANQAVQDL 308
                 *****8765457888888888888777776666678888888877777777777999********************99987765556888999***** PP

        MRJP 181 gkrgsqstakavdkngvlffglvnesaivcwneskpysrenlktvarneetlqfvsdlkide 242
                 g+ gs+  +   d++g+++++  +++ai + n+++      ++ + r++  +q++++l+++ 
  CDO70631.1 309 GDVGSHLNGLESDDQGFIYLTAPEHNAINRFNPKT----GMIEPFVRSPF-IQWPDTLAVTS 365
                 *********************************99....67777888884.88888888776 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.014   1.3e+02     195     232 ..     139     172 ..     116     182 .. 0.80
   2 ?   -0.3   0.0      0.07   6.3e+02      85     139 ..     174     235 ..     171     236 .. 0.74
   3 !   11.8   0.0   1.5e-05      0.14     137     216 ..     257     346 ..     251     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.014
         SGL 195 GnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaF 232
                 G    Av gg k++ f  +G+  ++i++pa+    ++F
  CDO70631.1 139 GSTLPAVPGGPKLIGFHLNGTRFATITFPAS----VVF 172
                 55566888999******************54....444 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.07
         SGL  85 llrfNDgvvdpdGrlwfGtmgdeeakgeev.......galyrldpdgklervlddltipNGl 139
                 + ++ND+++d +G  ++  ++ + +++  v        +  +ld + +++ ++d +++ NG+
  CDO70631.1 174 DSSLNDVRIDLRGDGFAYLPDSSPQRPGIVvvnlktrQSWRHLDNHPSVTTQVDLVSFHNGV 235
                 56899999999999888888888888886666666655555555557788888888888885 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 1.5e-05
         SGL 137 NGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvf.adlkkge........gepDGlavDaeGnvwvAvwgggkvvrfdpd.Gkl 216
                  G+a+s+dg+ +Y+a   +r++++++ +  + + s+ ++  + l+++         + + Gl  D +G ++ +  +++ + rf+p+ G +
  CDO70631.1 257 DGVALSADGDFFYYAPLSARRLFRIPTSFLKVQPSALDPNaILLANQAvqdlgdvgSHLNGLESDDQGFIYLTAPEHNAINRFNPKtGMI 346
                 69************99999999999987666666665555344444446678888677***************************96643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2575.68
//
Query:       CDO70632.1  [L=259]
Description: hypothetical protein BN946_scf184748.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.046   13.8   0.3        0.1   12.7   0.3    1.6  1  SGS       SGS domain


Domain annotation for each model (and alignments):
>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   5.8e-06       0.1      15      67 ..     143     195 ..     128     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.8e-06
         SGS  15 keekkeeegeaalnklFkklYadadedtrrammKSyveSnGtvLstnWeevkk 67 
                  +e++e+e+    ++lF+++ + a+  +r+a   Sy    G ++  + e+v++
  CDO70632.1 143 MDEDEEDEDTMLNDELFHRIVESAKHKQRHAYRLSYAYDVGSSFDPDLEDVQT 195
                 333344455556689*****************************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1965.26
//
Query:       CDO70633.1  [L=641]
Description: hypothetical protein BN946_scf184748.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-90  302.7   0.0    8.2e-90  300.8   0.0    1.9  2  Mlh1_C          DNA mismatch repair protein Mlh1 C-terminus
    7.3e-29   99.9   0.1    1.5e-28   98.9   0.1    1.6  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai


Domain annotation for each model (and alignments):
>> Mlh1_C  DNA mismatch repair protein Mlh1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.25   2.3e+03     172     199 ..     205     246 ..     193     288 .. 0.47
   2 !  300.8   0.0   9.1e-94   8.2e-90      19     270 .]     388     641 .]     384     641 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHS----.---...................... CS
      Mlh1_C 172 ekeCfetilrelAlfyapeqlpekees...................e 199
                 e + +e i+ ++ +  + +++     s                   +
  CDO70633.1 205 EDAIIERIADAIQEALIGQSQ-----SrvfeyqtlltggiaevpsqK 246
                 444444444444444441111.....122334555555554444221 PP

  == domain 2  score: 300.8 bits;  conditional E-value: 9.1e-94
                 HHHHHHHT-EEEEEEET..TEEEEEETTEEEEEEHHHHHHHHHHHHHHHHTT--EEEE-G-.-BHHHHHTTS-SHH.................HHHHHH CS
      Mlh1_C  19 eLteilanltfVGlvde..rlaliQhgtkLylvdygalskelfyqllLtdFgnfgeikLeeplslkeLlelaleeeeeeeeeeseeedkskeelaekiv 115
                 eL ei+a++tfVG+vd   +l+l+Qhgt+Lyl+++gal+ elfyql+L++Fg+f++i+L+++++l+ L+ la++ ee  e     ++  +ke++ ++iv
  CDO70633.1 388 ELAEIMAKHTFVGVVDAtrCLSLVQHGTRLYLLNHGALAAELFYQLGLRQFGDFSRIRLDPAPQLRMLVALAVDAEEGIE-----QAGLAKEAVTDRIV 481
                 799**************999********************************************************8444.....44556789****** PP

                 HHHHHTHHHHHHHH--EETT-EEEEEEEE-STT----STTHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHS----.---..........-T.T-... CS
      Mlh1_C 116 elLiekaemLeeyFsieidedgellslPlllkgytpslekLPlfllrLateVdWeeekeCfetilrelAlfyapeqlpekees......eekaseeeke 208
                 +lL++++emL+eyFs+ i++dg++++lP+ll++ytp+l+kLPlfl+rL+++V+W+eek+Cfet+lrelA fy+pe+l ++e+s      ++++++  ++
  CDO70633.1 482 KLLMDRREMLQEYFSLAISDDGRVETLPMLLRDYTPNLDKLPLFLMRLGPQVNWTEEKACFETFLRELAYFYVPEPLLPDEDSrgtdipASQSADGVQD 580
                 *****************************************************************************9988889999986666666777 PP

                 TTS-HHHHHHHHHHHHHHHHHHHHTHHHHHHHH---BGGGGG..GEEEEEEHHHHHHHS--- CS
      Mlh1_C 209 eeeeeeeeeeaeerreelkwvlehvlfpaikarllppksllkdgtvvevasledLYkVFERC 270
                 ++e+++ + ea+++r+++ w+++hvlfpa+ +++ ppksll+ ++vv+va+l+dLY+VFERC
  CDO70633.1 581 RHETSTGDPEAANARKAVLWQIQHVLFPAMARYVTPPKSLLD-RDVVQVADLPDLYRVFERC 641
                 888888999*********************************.5****************** PP

>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   1.7e-32   1.5e-28      19     118 ..     122     220 ..      80     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 1.7e-32
                     EETTEEEEEEEE-CCG-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSSTT----EETTHHCHHHHHHHH CS
  DNA_mis_repair  19 eeeqlkieGfiskpelsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNvhPtKreVrfqdeeevieaieea 113
                      +e+++ e ++++++ +  k+ + +lf+N+Rlv+s+ +k+a++++Y+ +l+kg  p+v+L+l+i+p++vDvNvhPtK+eV+f +e+++ie i +a
      CDO70633.1 122 GDESWNAEAYFTNANHQA-KKMTLLLFINHRLVESTRIKRALEAVYNGVLAKGASPFVYLSLQINPRSVDVNVHPTKKEVHFLNEDAIIERIADA 215
                     344588888888886555.55999*********************************************************************** PP

                     HHHHH CS
  DNA_mis_repair 114 lkeal 118
                     ++eal
      CDO70633.1 216 IQEAL 220
                     **997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4670.79
//
Query:       CDO70634.1  [L=530]
Description: hypothetical protein BN946_scf184748.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3916.49
//
Query:       CDO70635.1  [L=372]
Description: hypothetical protein BN946_scf184756.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-40  137.3   1.5    7.9e-40  136.6   1.5    1.3  1  Ribosomal_L4     Ribosomal protein L4/L1 family
    3.3e-29  100.8   1.6    3.3e-29  100.8   1.6    2.2  2  Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   1.5   8.8e-44   7.9e-40       2     191 ..      21     260 ..      20     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 8.8e-44
                   EE-HHHHSS---HHHHHHHHHHHHHSS-EE-----.-TTTSS---S-SS-SSSSSS---S-TT............STTSTT---SS---S.EEHHHH CS
  Ribosomal_L4   2 eLspkvFaapirrdlihravvaylanrrqgtastk.arsevsgsgrklwkQKGtGrARvgsir............spiargGgvahgpkperdystk 85 
                   +L p+v  apir d++++++++  +n+rq +a +  a++++s+  +++++  G++ AR++++              +++rgG+++ ++k++r+++ k
    CDO70635.1  21 PL-PAVLTAPIRLDVVQQVHKSLAKNKRQAYAVSEkAGHQTSA--ESWGT--GRAVARIPRVGgggthrsgqaafGNMCRGGRMFAPTKTWRKWHVK 112
                   67.99***************************9888*******..6****..********************************************* PP

                   HHHHHHHHHHHHHHHHHHHTT-EEEES....---.-S............S--HHHHHHHHHHTT-..........................TTSSEE CS
  Ribosomal_L4  86 lnkKvrrlAlrsaLsakakqglllvvd....nleple............esktkelvellkklgl..........................ksksvL 140
                   +n+ +rr A+ saL+a a  +l+l+++    +   +e             +ktke+v+llk+l++                          +++++L
    CDO70635.1 113 VNQNQRRFAVVSALAASALPSLVLARGhrieE---IEevplvvanaaesFKKTKEAVALLKALKAysdvvkvsnsrklragkgkmrnrrhrQRRGPL 206
                   ***************************74443...44566779999999999**********99999999999999999999999999999999*** PP

                   EEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSE....EEEEHHHHHHHHH CS
  Ribosomal_L4 141 ivvsekdenlvlaarnlpgvevieveslnvydllkadk....vvitksaveklee 191
                   +v++e d+++v+a+rnlpgve+++v++ln+++l+++ +    v++t++a+  l+e
    CDO70635.1 207 VVYNE-DNGIVKAFRNLPGVELVNVRRLNLLQLAPGGHlgrfVIWTEGAFGLLDE 260
                   ***97.99*****************************************988876 PP

>> Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.17   1.5e+03      27      46 ..     186     206 ..     168     209 .. 0.68
   2 !  100.8   1.6   3.7e-33   3.3e-29       1      74 [.     273     347 ..     273     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.17
  Ribos_L4_asso_C  27 vlrpakkekkkkr.vqkkNPL 46 
                       lr+ k++ +++r  q++ PL
       CDO70635.1 186 KLRAGKGKMRNRRhRQRRGPL 206
                      467777766666658888887 PP

  == domain 2  score: 100.8 bits;  conditional E-value: 3.7e-33
  Ribos_L4_asso_C   1 kgynLPrpkmtnaDlsRiinSdeiqsvlrpakkekkkkr..vqkkNPLknkqvmlrLNPyakvlrraallaqkkrk 74 
                      k+y LP++k++n+D++R+inSdeiqsv+rpa+ +++k r  +q+kNPL n+ v++rLNPyak++rr+++l+q++ k
       CDO70635.1 273 KDYVLPTAKISNPDVTRLINSDEIQSVVRPANAKHQK-RpwTQHKNPLVNRGVLFRLNPYAKTVRRQEILKQERIK 347
                      79*****************************885555.55********************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2439.59
//
Query:       CDO70636.1  [L=883]
Description: hypothetical protein BN946_scf184756.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-52  178.8   0.0    8.6e-52  176.1   0.0    2.1  1  Pkinase         Protein kinase domain
    3.3e-30  105.2   0.0    3.4e-22   79.0   0.0    3.4  3  Pkinase_Tyr     Protein tyrosine kinase
    0.00017   21.6   1.3      0.033   14.1   0.0    2.9  3  APH             Phosphotransferase enzyme family
     0.0017   17.2   0.1     0.0017   17.2   0.1    1.6  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.078   12.3   0.2         20    4.3   0.0    3.0  3  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.0   2.4e-55   8.6e-52       1     264 []      58     402 ..      58     402 .. 0.90

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 2.4e-55
                 EEEEEEEEEESSEEEEEEEETT.TTEEEEEEEEECHCHCHHHH.......................HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEE CS
     Pkinase   1 yekleklGeGsfGkVykaveke.tgkivAvKkikkekakkkke.......................kkvlrEikilkklkhpnivrlyevfee..kdel 73 
                 ye ++++G+G+ G Vy a++++ ++  vA+K+++++ +++++                        +k+++Ei+i+kkl+hp+ivrl+ev+ +  +d++
  CDO70636.1  58 YEFVHRVGKGQHGDVYLARDTTrDNMDVAIKCVSRKAKSDRMSklrkrnlprssntplvdqlgsteHKIRKEIAIMKKLSHPHIVRLLEVIDDrqNDKI 156
                 778899*************86526789******999988887778999*****************999***********************998899** PP

                 EEEEE--TTEBHHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS................. CS
     Pkinase  74 ylvleyveggeladlle.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk................. 153
                 y+v+ey+ gge++ + + ++  l  +++++i++ ++ gleylH +giiHrD+Kp+N+L   +++ +KitDFG+++    +                   
  CDO70636.1 157 YMVMEYLAGGEIKWRTRsDNPLLRVDQTRRICRDVILGLEYLHYQGIIHRDIKPANLLWTaDRRTVKITDFGVSTFSYAQRLaaagkgiikeddtdpil 255
                 ***********99998845556**************************************77777*********9988887789999************ PP

                 .....BCTTTSCGGGS-HHHH.....................TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..... CS
     Pkinase 154 .....ltsfvgtseYlAPEvl.....................keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..... 221
                      l++  gt+ +lAPE++                     ++ +++k++D+W+ Gv+ly ll+g  pf+++++ e ++ +  q   + +++g     
  CDO70636.1 256 mdesdLSKTAGTPMFLAPEIVsdvpmldvasssalslhtparRKPPITKAIDIWAFGVTLYGLLFGILPFNAKNEFEIYRVIRSQDWDVPDTMGldqlp 354
                 *********************99999999999998888888666888************************9999999999988877777777766666 PP

                 .....SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 222 .....etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                      + +   p +++  + ++dll++ll+kd +kR+t ee+++hp++
  CDO70636.1 355 tggryQRRPRRPGDETEGSLVIDLLERLLEKDARKRITLEEVKRHPWI 402
                 66554444455555555999***************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.8e-05       0.1       3      48 ..      60     102 ..      58     110 .. 0.87
   2 !   79.0   0.0   9.4e-26   3.4e-22      44     155 ..     122     235 ..     113     246 .. 0.91
   3 !   10.2   0.0     9e-05      0.32     182     221 ..     302     340 ..     290     350 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.8e-05
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeel 48 
                  + +++G+G+ G+V+ ++ +   ++++++Va+K+++++a+++++++l
   CDO70636.1  60 FVHRVGKGQHGDVYLARDT---TRDNMDVAIKCVSRKAKSDRMSKL 102
                  67899**********9988...8999********999999877766 PP

  == domain 2  score: 79.0 bits;  conditional E-value: 9.4e-26
                  HHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  44 ekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                  +++++ +e++imkkl+hp+iv+ll v+   +++++++v+ey++gG+++   r++ ++ l+++++ +++ +v  G+eyL+ + ++Hrd+   N L + +
   CDO70636.1 122 TEHKIRKEIAIMKKLSHPHIVRLLEVIDdrQNDKIYMVMEYLAGGEIKWRTRSD-NPLLRVDQTRRICRDVILGLEYLHYQGIIHRDIKPANLLWTAD 218
                  467899*********************9777888******************98.***************************************9975 PP

                  T.EEEE-STTTHEETTT CS
  Pkinase_Tyr 140 k.vvkisDfGLardiek 155
                  + +vki+DfG++   + 
   CDO70636.1 219 RrTVKITDFGVSTFSYA 235
                  54********9987654 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 9e-05
                  EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTT CS
  Pkinase_Tyr 182 ftsksDvWsfGvllwEiftlgespypglkneevleklkeg 221
                  +t++ D+W+fGv+l+ ++  g  p++  ++ e+++ ++++
   CDO70636.1 302 ITKAIDIWAFGVTLYGLLF-GILPFNAKNEFEIYRVIRSQ 340
                  68899************98.******99999999988654 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0019       6.8      32     101 ..     121     194 ..      61     200 .. 0.71
   2 !   14.1   0.0   9.2e-06     0.033     153     198 ..     185     232 ..     167     237 .. 0.68
   3 ?   -1.7   0.1      0.62   2.2e+03     123     170 ..     424     470 ..     326     472 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
                 S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS....HHHHHHHHHHHHHHHHH CS
         APH  32 raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr....klsaaqlpellealgef 101
                  ++ +ir+e a+++ L+   + +  ev++ d  ++ i+++++ + + +++ ++r     l  +q+++++++++  
  CDO70636.1 121 STEHKIRKEIAIMKKLSHPHIvRLLEVID-DRQNDKIYMVMEYLAGGEIKWRTRsdnpLLRVDQTRRICRDVILG 194
                 57889************666769999999.555555555555555555555555777766677777777776655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.2e-06
                 HHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 153 laalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 ++ +++  +g      ++++H+D++p Nll++ +d r + + Df+ ++ 
  CDO70636.1 185 RRICRDVILGleyLHYQGIIHRDIKPANLLWT-ADRRTVKITDFGVSTF 232
                 455555555555566789**************.4454445888877665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.62
                 CCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE- CS
         APH 123 lellrqlesatarllaselldlleeleeqvlaalaallpgelptvllH 170
                 le+ +++ +++  l++ ++++  ++l +  + a++++++++ + + +H
  CDO70636.1 424 LEPSPDETRSAMSLVRFRWFPTPQRLGR-GISAFLRNVRPQRSFRRTH 470
                 3333444444445555555555555555.5555555555555555555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.7e-07    0.0017     312     387 ..     188     277 ..      58     294 .. 0.78
   2 ?   -3.4   0.5      0.85   3.1e+03     248     272 ..     506     530 ..     460     570 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.7e-07
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.gare....................rtGTleFmaiev 385
                     +rD+I g++ L+  +gi+HrDi   N+l t     ++r+  + D+ + +    ++ ++ g  +                      GT+ F+a e+
      CDO70636.1 188 CRDVILGLEYLH-YQGIIHRDIKPANLLWT----ADRRTVKITDFGVSTFSYAQRLAAaG--KgiikeddtdpilmdesdlskTAGTPMFLAPEI 275
                     79**********.*****************....45566666666666655543322221..122333333444444444444889999999888 PP

  Pkinase_fungal 386 lk 387
                     ++
      CDO70636.1 276 VS 277
                     76 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.85
  Pkinase_fungal 248 lsskaevklkksesskkvekrsvds 272
                      +++++ + ++++ s++ +++sv +
      CDO70636.1 506 RHHHHHHSDRHEKQSQPYHHSSVRE 530
                     2222222222222222222222222 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.039   1.4e+02       6      64 ..      50     107 ..      47     164 .. 0.84
   2 ?    4.3   0.0    0.0057        20     157     189 ..     195     228 ..     177     236 .. 0.83
   3 ?    2.2   0.0     0.026        94     224     254 ..     299     329 ..     287     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.039
  Kinase-like   6 elgerertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqel 64 
                   +g+   ++  ++ ++kg+ + v++++d    +++ v +  +  +a +  + +l++ +l
   CDO70636.1  50 TKGRMINQYEFVHRVGKGQHGDVYLARDTT-RDNMDVAIKCVSRKAKSDRMSKLRKRNL 107
                  5666667777788899999*********97.899********************99887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0057
  Kinase-like 157 aanLqakglvhgkftvdnllldek.gglmlggft 189
                    +L+ +g++h ++++ nll+  +   +++++f+
   CDO70636.1 195 LEYLHYQGIIHRDIKPANLLWTADrRTVKITDFG 228
                  579****************997651568899885 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.026
  Kinase-like 224 ktkmthkldaWqlGlviyriwclklPltlat 254
                  k  +t ++d W+ G++ y +    lP++ + 
   CDO70636.1 299 KPPITKAIDIWAFGVTLYGLLFGILPFNAKN 329
                  5568999************999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 5712.60
//
Query:       CDO70637.1  [L=460]
Description: hypothetical protein BN946_scf184756.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-73  248.0   0.8    3.2e-73  247.6   0.8    1.1  1  Peptidase_S10  Serine carboxypeptidase
  ------ inclusion threshold ------
      0.069   13.3   0.0        1.2    9.3   0.0    2.2  2  DUF4783        Domain of unknown function (DUF4783)


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.6   0.8   3.5e-77   3.2e-73      28     397 ..      95     460 .]      92     460 .] 0.89

  Alignments for each domain:
  == domain 1  score: 247.6 bits;  conditional E-value: 3.5e-77
                    EEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EETTSSGS--SHHHHHHHHH..H CS
  Peptidase_S10  28 YwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSysntksdvktddeevaedly..e 121
                    +wf+e+++npe++pl+lWL+GGPG+s+l Gl +E+GP+r+n+d t+++ +np+sWn+v+n+++ldqP+  GFS  +++ +   +  ++aed++   
     CDO70637.1  95 FWFFEARENPETAPLTLWLQGGPGSSGLVGLYQEHGPCRINND-TTSVSYNPFSWNNVSNMIYLDQPIPAGFSQGSKSYN---NSFSAAEDVWhvS 186
                    9****************************************77.7******************************99988...8999999987336 PP

                    HHHHHHHH..STCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S.....STSEEEEEEEESE-SBHHHHHCCHHHHHHHTTSSHHHHHHHHHH CS
  Peptidase_S10 122 fLkkffek..fpeyksrdfyitGESYaGhyvPalakeilkknkkekk.....kkinLkGlligNglideaeqvnsyvefayehgliseeeyeslkk 210
                    fL+  f+   f ++  +df i++ESY+Gh+ Pa+++++l++n + ++     + +nLk l ig+gl+d+  q++sy+ +a +   +   + ++l +
     CDO70637.1 187 FLQILFDDhrFAQFMRNDFAIWTESYGGHFGPAFSRHFLDQNARIANgsldaHPVNLKVLGIGDGLMDPLVQYESYFTYAQYNPYFPTATNDTLAS 282
                    9**999754599*********************************999***99*************************888877776666555555 PP

                    HHEET...HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--S CS
  Peptidase_S10 211 acekk...eeleqesekcanllekaskvavekenkglnvynileeccklkaelkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkwee 303
                    a ++      +++++ +c+++l++  +   ++++++  v +i ++      + ++ ++   ++ + + + ++++y+n+   +  +++   v++++e
     CDO70637.1 283 AFQSWnetGGCRDQIVQCYDTLDPQICA--TSQFNC--VADIGNRL-----AGDRDQDYILADFTDTYPPDITTYANDTARKARIGA---VGDFQE 366
                    554334448**************99983..333443..33444433.....2345667788999999999*********99999995...79**** PP

                    B-HHH.HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEETTTCESEEEEEEEETTEEEEEETT- CS
  Peptidase_S10 304 cndsv.feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevspkkengqvaGyvkeyenltfltvkga 397
                     n+ v fe++++++ +++++ le ++++g+r ++y Gd+D++ n++g ea++  ++ + +++++++e ++ ++ng+ aG +k+ ++l +l+v+ga
     CDO70637.1 367 VNSGVlFEFQSEWM-QNSRPTLESVVNDGVRTVLYTGDADYLLNYFGVEAMLGIMKTKYSSKWAEQEFKNFTVNGESAGLYKNAGQLHYLRVFGA 460
                    ***99788866665.999***************************************************************************98 PP

>> DUF4783  Domain of unknown function (DUF4783)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.04   3.6e+02      41      75 ..     331     365 ..     324     376 .. 0.81
   2 ?    9.3   0.0   0.00014       1.2       2      47 ..     393     436 ..     392     443 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.04
     DUF4783  41 eqilkdFFkknppksfkikhkgkskeskyaigtlt 75 
                  +il+dF + +pp   ++ ++  +k+   a+g ++
  CDO70637.1 331 DYILADFTDTYPPDITTYANDTARKARIGAVGDFQ 365
                 589**********9999999888887666666665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00014
     DUF4783   2 eeiakalkkGnakeLskyfadkvelsilgkkndysksqAeqilkdF 47 
                 + +++ l +G+a+ L +yf+ +  l i+  k++ys++ Aeq +k+F
  CDO70637.1 393 DGVRTVLYTGDADYLLNYFGVEAMLGIM--KTKYSSKWAEQEFKNF 436
                 568999*************988888887..578***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3044.62
//
Query:       CDO70638.1  [L=284]
Description: hypothetical protein BN946_scf184756.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1992.29
//
Query:       CDO70639.1  [L=296]
Description: hypothetical protein BN946_scf184756.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-99  329.7   0.0      8e-99  329.4   0.0    1.1  1  Coq4      Coenzyme Q (ubiquinone) biosynthesis protein Coq4


Domain annotation for each model (and alignments):
>> Coq4  Coenzyme Q (ubiquinone) biosynthesis protein Coq4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.4   0.0  4.4e-103     8e-99       1     221 []      45     265 ..      45     265 .. 1.00

  Alignments for each domain:
  == domain 1  score: 329.4 bits;  conditional E-value: 4.4e-103
        Coq4   1 yeghvplslleklllavgsaiaalvdpergdlvaalgettglpalerlrekmlsdeeGrriLkerpritsetldleklkklpentlGraYakflekenv 99 
                 yeghvpl+++e  +l+vgsa++al++p+rgd+vaalg++t+ p+l rlr++ml++ eGr+iLk+rpr++s+t+d++kl+ lpe+t+G+aY+++le+++v
  CDO70639.1  45 YEGHVPLNWFEAGFLTVGSALMALANPRRGDMVAALGDLTSGPVLPRLRDAMLESAEGRQILKDRPRVNSHTVDMDKLALLPEGTFGNAYVTWLERCGV 143
                 99************************************************************************************************* PP

        Coq4 100 spdtRapvryiddeelaYvmqRyrevHDflHvllglptnvegEiavkafefaqtglpmallsalfgplrlsskererlleeylpwalragkkakellnv 198
                 +pdtR+pv+y+dd+elaYvmqRyre+HDf+H+++glp+nve+E+a+k+fefa++glpma+++a+fg+lrl++++rerl++e++pwa+++g++a++l++v
  CDO70639.1 144 TPDTREPVHYVDDPELAYVMQRYRECHDFYHCICGLPVNVESELALKFFEFANLGLPMAGFAAAFGHLRLTHAKRERLFREFVPWAIKCGSSAQSLITV 242
                 *************************************************************************************************** PP

        Coq4 199 ywEeeletdleelrkelgiekpp 221
                 ywE+++e++++e++ke+gi++pp
  CDO70639.1 243 YWEKRWEQNVDEMKKEFGIWDPP 265
                 *******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2286.14
//
Query:       CDO70640.1  [L=439]
Description: hypothetical protein BN946_scf184756.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-29  103.2   0.0      2e-29  102.9   0.0    1.1  1  Aminotran_1_2   Aminotransferase class I and II
    6.8e-10   38.3   0.0      1e-09   37.7   0.0    1.2  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   2.3e-33     2e-29      33     363 .]      78     429 ..      58     429 .. 0.86

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 2.3e-33
                    HHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTT CS
  Aminotran_1_2  33 aggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedf 128
                    a ++  +ygp+ glp+l e +  +  r+++ k     +v vgsG++ +i  +i +l +npg+ +lv +p+ya + + ++   ++++ +p    ++ 
     CDO70640.1  78 ALQEGLQYGPTAGLPSLCEWIYGLQAREHGRKKGEGWRVSVGSGSQDVIHKAILAL-VNPGEPVLVESPVYAGILPTFESLNCQFIVVP---TDSQ 169
                    6678899*******************99988888888*******************.9*******************************...4699 PP

                    EE-HHHHHHHHTTHHCTTETEEEEEEE.SS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTHHH...HGGSTTSTT...EEEE CS
  Aminotran_1_2 129 hldlealeealkeapegnkktkvilve.sphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl.davat...ranveeepn...lliv 216
                    ++   +l   l++ p g++k+kv+++     NPtG  a++e  +++l+la+++n+l++ D+ Y  ++fgs  ++      + + ++  +   ++  
     CDO70640.1 170 GIQSSSLRSTLENWPVGKPKPKVLYTVpYGGNPTGMTASKERRKEVLALAREHNFLILEDDPYYYLYFGSAqRPP-SyfsLELEQP--EvgrVIRF 262
                    ************************9752668**************************************874333.3343444444..2569**** PP

                    EESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHS..TEEEECCS.C CS
  Aminotran_1_2 217 gslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs...eleemrqrlqkrrkelrdeLael..glkvlasq.s 304
                     slsK ++  G+R+G+++g +a+++++    +  +   ssl+qa+++a l+    +++   ++++  q ++ +r+++   +++   gl+ ++ + +
     CDO70640.1 263 DSLSKILS-SGLRIGFACGPEAILNAIDMHTAVANLqtSSLTQAITVALLESWG-YDNfktHTHAVSQFYKGKRDVFERFMKKYldGLAEWDTPeA 356
                    *****996.6***************99888777777889999999999999744.33335488888899999999888888777**888887766* PP

                    SSEEEEEETHH...........CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 305 gmflltdlsae...........takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                    gmf +  l  +           +++ +  k le+ gv+ +pgt f      +  +R  ++ l+e+++ee++++l
     CDO70640.1 357 GMFFWFKLLLKtpgaggteeedSESLIRTKALEK-GVLALPGTVFLPdggkTPYVRAAFSLLDESDVEEAIKRL 429
                    *****98888899****77775555555558888.***********99999999*****************997 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.2e-13     1e-09     127     345 ..     140     360 ..     132     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.2e-13
                     EEEEES--HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC....-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTS CS
  Aminotran_MocR 127 llvtvpGydrhfllleelGielltvdlqddGpdvdaveklvae....dasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddaya 217
                     +lv +p y   +   e+l  ++++v+ +++G +  +++    +     +  k +++vp   nptG t s+e+ +++ al     +f i+ dd y 
      CDO70640.1 140 VLVESPVYAGILPTFESLNCQFIVVPTDSQGIQSSSLRSTLENwpvgKPKPKVLYTVPYGGNPTGMTASKERRKEVLALA-REHNFLILEDDPYY 233
                     68889999999999999999999999999999887765554441111677899*******************99999995.5689*********7 PP

                     S-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHC-S---HHHHHHHHHHHHH..STHHHHHHHHHH CS
  Aminotran_MocR 218 vhdlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvassedniawlkkylGlqsiGpdkveqlrhvkflkd..yeGlealmrdha 310
                         ++ +++ + + +l  +     r + + s ski  +G  ++f +  e+ ++ ++ ++ +  +    + q+  v +l+   y+ ++++ +  +
      CDO70640.1 234 Y-LYFGSAQRPPSYFSLELEQPEVGRVIRFDSLSKILSSGLRIGFACGPEAILNAIDMHTAVANLQTSSLTQAITVALLESwgYDNFKTHTHAVS 327
                     5.45699***********************************************************************99622556666555555 PP

                     HHHHHHHHHHHHHHHHHHTTTSSEEE---SBSS-E CS
  Aminotran_MocR 311 eliapkfeavlevleaelggaevatwteprGGyfi 345
                     ++ + k +  +  +++ l  +++a w +p+ G f 
      CDO70640.1 328 QFYKGKRDVFERFMKKYL--DGLAEWDTPEAGMFF 360
                     555555444444444444..679*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3237.01
//
Query:       CDO70641.1  [L=327]
Description: hypothetical protein BN946_scf184756.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-67  226.9  13.2    2.8e-67  226.6  13.2    1.0  1  UPF0014         Uncharacterised protein family (UPF0014)
  ------ inclusion threshold ------
       0.12   11.5   0.0       0.19   10.9   0.0    1.2  1  Tubulin_2       Tubulin like
       0.52   10.6   2.9          1    9.7   0.9    2.6  3  GHMP_kinases_N  GHMP kinases N terminal domain
        2.2    8.0  13.6       0.66    9.7   8.9    2.2  2  BPD_transp_1    Binding-protein-dependent transport system in


Domain annotation for each model (and alignments):
>> UPF0014  Uncharacterised protein family (UPF0014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.6  13.2   6.3e-71   2.8e-67       1     237 [.      15     254 ..      15     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 226.6 bits;  conditional E-value: 6.3e-71
     UPF0014   1 llqlalalllvlialllslvlklglekelliaavrmvvQLllvGyvLklifalnslllvllillvmllvAai.eaakrvkkklkklll..ivllsllvs 96 
                 +++++la++++l+  +ls  ++lg+  +l++aavr+vvQL +v+++L+ +f++n++++v+++++++ l+++  +++++ kk++  ++    ++     s
  CDO70641.1  15 WANVGLAFSFILLDGFLSTSFGLGVGSSLITAAVRCVVQLSVVALILQKVFETNNPWAVAGMAFLLNLMGTAeTVVNKSKKRYDYMVSlaFLWGFGSRS 113
                 67899**************************************************************99988689999999999999953444445578 PP

     UPF0014  97 tlltlllllllviqpepwyepqylIPlaGmilGnamnaialalerllselksereeiealLalGatpkeAvkeivreairaaliPtinsmatvGlVsLP 195
                 t+ + ++ + +++ +ep+++p+++IP++Gm++G ++++i ++++ +l+el ++r+++e+ La+Ga++ eA+k+i+r+a+r al+P+in+m+++G++++P
  CDO70641.1 114 TIPVSIVGIRFAMDVEPFWKPEQYIPVVGMLCGATISGIVVSVSYVLKELYDNRDKVEMFLAFGASRFEACKPIARDALRLALTPNINQMSVIGIIAIP 212
                 999************************************************************************************************ PP

     UPF0014 196 GmmtGqiLaGaspleAvkyqilimfmilastalstvlvvlll 237
                 GmmtG iL+G+s+ +A+++q++imfmi+++tals+++++ l+
  CDO70641.1 213 GMMTGAILGGSSVEQAARLQMVIMFMISSCTALSSIVTTILA 254
                 *************************************99886 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-05      0.19     158     193 ..     138     172 ..     125     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
   Tubulin_2 158 vfVvgSLaGGTGSGiflDvayllrkilkeekqkvki 193
                 + Vvg L+G T SGi++ v y+l++++++ ++ v++
  CDO70641.1 138 IPVVGMLCGATISGIVVSVSYVLKELYDNRDK-VEM 172
                 779*************************9997.554 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.9   0.00022         1       8      36 ..      31      59 ..      25      93 .. 0.75
   2 ?   -1.2   0.0      0.57   2.5e+03      19      35 ..     151     167 ..     150     196 .. 0.72
   3 ?   -2.9   0.0       1.9   8.6e+03      21      31 ..     248     258 ..     246     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00022
                    SHTTSSSCHHHHHHHHHHHHHHHHTTEHH CS
  GHMP_kinases_N  8 iPvgaGLGSSAAlavalvaAllallglsl 36
                    + ++ GLG +++l++a+v+++ +l  + l
      CDO70641.1 31 LSTSFGLGVGSSLITAAVRCVVQLSVVAL 59
                    66789****************99983333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
                     HHHHHHHHHHHHHTTEH CS
  GHMP_kinases_N  19 AlavalvaAllallgls 35 
                      ++v++ + l +l++++
      CDO70641.1 151 GIVVSVSYVLKELYDNR 167
                     68999999999999754 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.9
                     HHHHHHHHHHH CS
  GHMP_kinases_N  21 avalvaAllal 31 
                     +v++++Al+  
      CDO70641.1 248 IVTTILALAVV 258
                     56777777654 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.0      0.18   8.2e+02     155     180 ..      41      66 ..      10      80 .. 0.68
   2 ?    9.7   8.9   0.00015      0.66      59     171 ..     144     258 ..      55     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
  BPD_transp_1 155 nggvlalviavlllnlvadilqrlld 180
                     ++ a+v +v+ l++va ilq++++
    CDO70641.1  41 SSLITAAVRCVVQLSVVALILQKVFE 66 
                   35566777777888888888888776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00015
  BPD_transp_1  59 llllsaapyvrlirraalrsl..pkdlveaaralGasrwqi...frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydy 150
                   l+  ++ ++v + ++ +l++l  ++d ve ++a Gasr++    + + +l++al+p i ++ +  ++++ g +   +lg+++  +  +l+  +++++
    CDO70641.1 144 LCGATISGIV-VSVSYVLKELydNRDKVEMFLAFGASRFEAckpIARDALRLALTPNINQMSVIGIIAIPGMMTGAILGGSSVEQAARLQMVIMFMI 239
                   3333333333.3333444444338999************8744477899******************************999999999999999999 PP

  BPD_transp_1 151 seisnggvlalviavlllnlv 171
                   s+ +  ++  +v  +l+l +v
    CDO70641.1 240 SSCT--ALSSIVTTILALAVV 258
                   9888..333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.37s 00:00:01.05 Elapsed: 00:00:00.60
# Mc/sec: 1651.83
//
Query:       CDO70642.1  [L=1076]
Description: hypothetical protein BN946_scf184756.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-35  121.1  21.4    4.2e-35  121.1  21.4    1.6  1  ABC2_membrane    ABC-2 type transporter
    2.4e-26   92.9   0.0    4.6e-26   92.0   0.0    1.5  1  ABC_tran         ABC transporter
    2.1e-05   24.8  10.3    2.1e-05   24.8  10.3    4.0  3  EGF_2            EGF-like domain
    3.1e-05   23.3  25.7    3.1e-05   23.3  24.1    1.7  1  ABC2_membrane_3  ABC-2 family transporter protein
    0.00074   19.4   0.3        1.4    8.7   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.005   16.8   0.0     0.0088   16.0   0.0    1.3  1  Rad17            Rad17 P-loop domain
     0.0074   16.0   0.1      0.016   14.9   0.1    1.5  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.019   14.9   0.1      0.037   13.9   0.1    1.4  1  RsgA_GTPase      RsgA GTPase
      0.065   12.7   0.0       0.12   11.8   0.0    1.4  1  SMC_N            RecF/RecN/SMC N terminal domain
       0.21   11.7   0.0        0.4   10.8   0.0    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
       0.21   12.1   0.1       0.45   11.1   0.1    1.5  1  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1  21.4   2.6e-38   4.2e-35       1     210 []     802    1013 ..     802    1013 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 2.6e-38
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplysl 93  
                     tq+++l  r f++ +rdp+l+ ++  +  + +a+++g+ f n+  + ++++nr+g++ff++  ++fs+l+s+ ++f  er +++re+++++ys+
     CDO70642.1  802 TQFRILSGRAFKNLYRDPALL-ATHYVAAIAVAVICGFFFQNITnDIAGFQNRLGVFFFTLALFGFSCLSSL-NLFANERILFMRERANGYYSP 893 
                     69****************999.********************99556666699************7888877.********************* PP

  ABC2_membrane   94 sayvlakvlve.lpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipids 184 
                      +y+++k+l++ lp+ ++  l++  i+y ++gl ++   f+ fll+l+l+ l++ s+ ll+s+ + s  +as++++l++l+ ll++G +i+++s
     CDO70642.1  894 LTYFASKILFDiLPLRVIPPLVYGGIIYGWIGLVPEvaTFWKFLLTLVLFNLTTASVILLLSIAFASTSVASLIGTLIMLFNLLFTGLLINRKS 987 
                     ***********99***********************9999****************************************************** PP

  ABC2_membrane  185 mpkwlqwiaylnPltyavealrsnlf 210 
                     +p  +qw++ ++++  a+eal +n++
     CDO70642.1  988 VPTAFQWLHTVSFFHAAFEALAVNEL 1013
                     *********************99975 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   2.8e-29   4.6e-26       1     137 []     396     548 ..     396     548 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2.8e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81 
                 l+n+s   k+g+++ai+G +GaGKSt+l +la++ k+    G+ l++g+ + +   e ++k  g++ qe+ l ++ltv+e+                ++
  CDO70642.1 396 LDNISGCAKPGQLLAIMGASGAGKSTFLDILARKNKKgsVGGTTLVNGRAIAD---EDFKKVTGFVDQEDMLMSTLTVYETvlysallrlpremsleAK 491
                 79********************************9987677888999999999...**************************************99989 PP

                 HTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +  + +++lg+ ++kd+++++ + +s+SgG+k+rv++a+ l++ p++l+lDEpt+
  CDO70642.1 492 KYRTLETMNELGILGIKDSRIGETGrRSISGGEKRRVSIACELVTSPSILFLDEPTS 548
                 999******************99999*****************************96 PP

>> EGF_2  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  10.3   1.3e-08   2.1e-05       1      32 []      62      93 ..      62      93 .. 0.94
   2 !   12.4   3.3   9.3e-05      0.15      18      32 .]     112     127 ..      98     127 .. 0.86
   3 ?   -1.7   2.2       2.4     4e+03      14      28 ..     236     248 ..     235     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.3e-08
       EGF_2  1 CsasdeiCgghGtCvnqcGqCdCdsgyqGktC 32
                C+ +  +Cg+ G C ++ GqC+C++g+ G +C
  CDO70642.1 62 CQLDAFTCGNFGECSKFDGQCKCPPGWAGIDC 93
                7777789************************* PP

  == domain 2  score: 12.4 bits;  conditional E-value: 9.3e-05
       EGF_2  18 cG.qCdCdsgyqGktC 32 
                 +G qC+C++g++G +C
  CDO70642.1 112 EGkQCECKDGWTGINC 127
                 5746************ PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.4
       EGF_2  14 CvnqcGqCdCdsgyq 28 
                 C++++  C+C +g++
  CDO70642.1 236 CDTLE--CKCVPGRF 248
                 88555..***77765 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3  24.1   1.9e-08   3.1e-05     159     344 ..     850    1065 ..     838    1066 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.9e-08
  ABC2_membrane_3  159 vasflvg.liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdfl.vyllqlllilllafgl..gipfg.nlglllllf 245 
                       +++ l + ++ + l+ +++++ ++ +++E+   ++e+      spl+y+ skil+d l + +++ l++ ++++g    +p    ++ +ll +
       CDO70642.1  850 FQNRLGVfFFTLALFGFSCLSSLNLFANERILFMRERANGY-YSPLTYFASKILFDILpLRVIPPLVYGGIIYGWigLVPEVaTFWKFLLTL 940 
                       44445553666777888888888899***************.**************986778999*****9888554444446778899*** PP

  ABC2_membrane_3  246 llfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrli....tgdplwe......... 324 
                       +lf l+++++++lls +f +++ a+++ ++++l+ ++f g+l+  +++p+a++w+  +  f+a +++l  ++          +         
       CDO70642.1  941 VLFNLTTASVILLLSIAFASTSVASLIGTLIMLFNLLFTGLLINRKSVPTAFQWLHTVSFFHAAFEAL-AVNelryL-----Qlheekygvn 1026
                       ***************************99999977777777787887777777776666666666666.44454440.....2444666666 PP

  ABC2_membrane_3  325 ..................il.lsliilalfavvylllal 344 
                                         ++ +++++l +f+  +++l++
       CDO70642.1 1027 idvpaaailstfglraesFWwPNIALLGIFFGTFTVLSY 1065
                       779999************666**************9987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2   0.00097       1.6       3      20 ..     410     427 ..     408     454 .. 0.85
   2 !    8.7   0.0   0.00083       1.4     256     299 ..     536     580 ..     501     581 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00097
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 ++ G+ g+GKS++Ld+l 
  CDO70642.1 410 AIMGASGAGKSTFLDILA 427
                 789**************4 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00083
      AAA_21 256 kkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                  ++s+l++DEp +gL+     ++++ l +l+r  +  v++t H+p
  CDO70642.1 536 TSPSILFLDEPTSGLDAYNALSVIDSLVSLARdYNRTVVFTIHQP 580
                 445**************7777777666444444888999997776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.4e-06    0.0088      42     112 ..     403     474 ..     391     498 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.4e-06
       Rad17  42 srkkriLLisGPsGCgkstvvkvLskel...giklrewlnpvslkepdnqksdfkgltekesrflsqiesfkel 112
                  ++ ++L i G sG gkst + +L+++    ++     +n+  + + d++k  + g +++e+ ++s + +++ +
  CDO70642.1 403 AKPGQLLAIMGASGAGKSTFLDILARKNkkgSVGGTTLVNGRAIADEDFKK--VTGFVDQEDMLMSTLTVYETV 474
                 57789*******************965411134446788999988888876..678999999999999999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     1e-05     0.016      24      40 ..     408     424 ..     398     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
      AAA_29  24 atlltGpsGsGKSTllD 40 
                    ++G+sG+GKST+lD
  CDO70642.1 408 LLAIMGASGAGKSTFLD 424
                 6789************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.3e-05     0.037      99     123 ..     405     430 ..     375     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
                  T.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpel 123
                    ++ +++G SG+GKSt+++ l+ ++
   CDO70642.1 405 PgQLLAIMGASGAGKSTFLDILARKN 430
                  44899***************999854 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.2e-05      0.12      26     199 ..     408     579 ..     393     598 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.2e-05
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevs 124
                 + ai+G+ G+GKs +ld +      r++ k  s   + l++  ++ a  ++ +v+ ++d+ed  +++ +   ++  ++      e+ ++ k+ +  e +
  CDO70642.1 408 LLAIMGASGAGKSTFLDIL----A-RKN-KKGSVGGTTLVNG-RAIADEDFKKVTGFVDQEDMLMSTLTVYETVLYSALLRLPREMSLEAKKYRTLETM 499
                 569**************77....5.444.3456667889998.9999***************99666665556666666666679************** PP

                 HHHHCTT-STT........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSH CS
                 xxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
       SMC_N 125 ellesagiske........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislre 199
                 + l   gi+ +        ++SgGek  v++a     + v   ++ +lDe  + LD+ n   v + l +   +    +v ++++
  CDO70642.1 500 NELGILGIKDSrigetgrrSISGGEKRRVSIAC----ELVTSPSILFLDEPTSGLDAYNALSVIDSLVSLARDyNRTVVFTIHQ 579
                 *********9999999**9********998865....55667788899*********998877766655443325666666654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00024       0.4       3      34 ..     410     440 ..     408     463 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00024
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTr 34 
                 ai+G + +GKSt++  l ++  + ++  gtT+
  CDO70642.1 410 AIMGASGAGKSTFLDILARK-NKKGSVGGTTL 440
                 8**************99985.45566666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00028      0.45       2      23 ..     410     431 ..     409     469 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      AAA_18   2 lltGtpGvGKttlakeLskrlg 23 
                 +++G++G+GK+t+ + L+++++
  CDO70642.1 410 AIMGASGAGKSTFLDILARKNK 431
                 599**************99963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.54
# Mc/sec: 6002.41
//
Query:       CDO70643.1  [L=309]
Description: hypothetical protein BN946_scf184756.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-19   68.9   0.2    1.1e-17   64.5   0.2    2.6  1  Ala_racemase_N  Alanine racemase, N-terminal domain
  ------ inclusion threshold ------
      0.037   14.3   0.0        0.1   13.0   0.0    1.7  1  NUC130_3NT      NUC130/3NT domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.2   1.2e-21   1.1e-17       3     219 .]      42     299 ..      41     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.2e-21
                     HHHHHHHHHHHHHHS.CT..TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTS.CSEEEEESC...STGGGHHHHHHTTE CS
  Ala_racemase_N   3 ldalrhNlrrlrala.gp..gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagi.tapilvleg...fspeelaalaeydl 90 
                     l+ +r++++++ a++ ++  +a l+av+K   +++  v + +   ++g + fg+++++E++  +++   + ++  ++     +++ la++ +   
      CDO70643.1  42 LAEIRQRVEAAGAKTaSRtrPATLVAVSKY--KPASDVLACY---DAGQRDFGENYVQELVDKAAQLPqDIRWHFIGSlqsNKAKILASIPNLYA 131
                     66777777777777743357788*******..8888877777...4569************555554433344444442114444455555579* PP

                     EEEESSHHHHHHHHHHHHH.TTS-EEEEEEBESSSS..SSS..................BSCHHHHHHHHHHHH.TTTEEEEEEE-S-SSTTSTS CS
  Ala_racemase_N  91 tvtvdsleqlealaaaare.agkplrvhlkidtgmg..RlG..................ftpeeleellealaa.lpglrleglmtHfasadepd 163
                     ++tv+s + + al +a+ +   +pl+v+l+++t+++  ++G                  ++++el +l++++   +p+l+l+glmt+ + a++ +
      CDO70643.1 132 VQTVSSVKGATALHKALPAdRPTPLNVLLQVNTSGEdaKSGvpplttgsppaplpaqadIDASELVQLAKRILMeCPRLHLQGLMTIGSLAESLA 226
                     ****************9998899***********999****9999999****999988888877777777665548***************7666 PP

                     ..HHHHHHHHHHHHHHHHH....HHTT.GGGS.........EEEEESHHHHHHS.GGGTTEEEESGGGGT-SS CS
  Ala_racemase_N 164 ..eeteaqlarfeealeel....ekag.lrpp.........vvslanSaailla.aahfdmvRpGialyGlsp 219
                       e+ ++++ar+   +++l    e+ag  r +         ++s+++S+++ +a aa +d+vR+G+ ++G++p
      CDO70643.1 227 aaEKPNEDFARLVGTRDALeaalERAGfRREDgkwgeegrlLLSMGMSSDFEAAlAAGSDIVRVGTGIFGARP 299
                     655555567776444444422223333222112222233459************4466*************98 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05       0.1       3      43 ..      75     115 ..      75     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
  NUC130_3NT   3 aqvahcYpketkefpqeLselLlehhsvLhpdlRkklvqaL 43 
                 + v  cY     +f ++ ++ L +++++L++d+R +++++L
  CDO70643.1  75 SDVLACYDAGQRDFGENYVQELVDKAAQLPQDIRWHFIGSL 115
                 67899**********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2063.89
//
Query:       CDO70644.1  [L=343]
Description: hypothetical protein BN946_scf184756.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-30  103.4   0.0      1e-29  102.6   0.0    1.4  1  ADH_N_2       N-terminal domain of oxidoreductase
    5.7e-17   61.9   0.0    9.6e-17   61.2   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    7.8e-10   39.9   0.0    1.7e-09   38.8   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.08   12.8   0.0        6.3    6.6   0.0    2.3  2  DFP           DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   2.3e-33     1e-29       2     107 ..       8     115 ..       7     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 2.3e-33
     ADH_N_2   2 qwvlkkrpegaptesdfeleeeelp.elkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSk.npdfkvGdlVvgllgwqdya 98 
                 +++l++rp+ ++t s+f+ e ++   ++++ e+lv+a+y+S+DP+mRg++nda+syv+pv++g+vmr+g+++eVve    ++fk+Gd+V g  gw++ya
  CDO70644.1   8 RITLAERPKTTITSSTFKREVVPFDlNPGPSEILVKARYVSIDPAMRGWLNDARSYVPPVKIGEVMRAGGIAEVVEAGpGSAFKKGDIVFGSFGWAEYA 106
                 689******************9999899999********************************************8762689***************** PP

     ADH_N_2  99 vsdgkglek 107
                 v+++k+ +k
  CDO70644.1 107 VVQDKHAQK 115
                 ****99887 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.1e-20   9.6e-17       2     129 ..     162     293 ..     161     294 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.1e-20
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEEE. CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgeee. 96 
                  G+ ++q+ k  Ga+v+a+++s++k++ ++   G+d+++nyk+a++ e+ +++ g   +dv+f+ vG g+ l+  l+ lk + r+v++G+   +++++ 
  CDO70644.1 162 TGSVVCQIGKKRGAKVYAIAGSADKCAWLEHeVGVDRAFNYKSATFYEDFRKHAG--YLDVYFDNVG-GDILNFMLTRLKQKARIVLCGAiaDYNNNKp 257
                 699**************************998*********888**********4..9*********.**********************986666668 PP

                 ...EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 ...fdlrnlllkeksilGsllgslreefkealdlla 129
                     +  nl++++ ++ G+++ ++ ++++ea + la
  CDO70644.1 258 kglSSYTNLIAQRAKMEGFIVFDYAKRYPEAQRELA 293
                 99777777********************99987765 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.9e-13   1.7e-09       2     133 .]     195     332 ..     194     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.9e-13
                   T-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----...........S-EEE-CHHHCTTT-EEEE--GGG...-. CS
  ADH_zinc_N_2   2 GAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp..........lsaallkpakkrkgrsvkyeflfsmkas. 84 
                   G+d +++y++  f    ++   +  Dv +d+vgg+ l    l+ l++++r+v  g+ +          l                +y+ l+  +a+ 
    CDO70644.1 195 GVDRAFNYKSATFYedfRKH-AGYLDVYFDNVGGDIL-NFMLTRLKQKARIVLCGA-IadynnnkpkgL---------------SSYTNLIAQRAKm 273
                   899999***66666587444.3559*********988.7777888777**998775.223344443433...............3444444333334 PP

                   ...........-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 ..........aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                             +  ++ +ela+++ eG l+     v +le+a+eA+ +l sg  +GK+V+
    CDO70644.1 274 egfivfdyakRYPEAQRELAEMLREGSLKRKFHIVKGLENAPEALNLLFSGGNTGKLVV 332
                   4556666666455558*************999999***********************8 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0014       6.3      27      54 ..     158     185 ..     154     223 .. 0.71
   2 ?    3.8   0.0      0.01        47      73      99 ..     230     256 ..     224     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0014
                 ---HHHHHHHHHHHHTT-EEEEEE-S-S CS
         DFP  27 SSGkmGyalAeaaaarGaeVtlvsgpvs 54 
                 + G +G  +++   +rGa+V  ++g+ +
  CDO70644.1 158 AAGATGSVVCQIGKKRGAKVYAIAGSAD 185
                 5799*********************963 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.01
                 HHHHHHHHTT-SEEEE---S--EEES- CS
         DFP  73 leaveealkeadivimaAAvaDyrpke 99 
                 l+ + ++lk++  ++ + A+aDy+ ++
  CDO70644.1 230 LNFMLTRLKQKARIVLCGAIADYNNNK 256
                 5667788899999**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2509.88
//
Query:       CDO70645.1  [L=548]
Description: hypothetical protein BN946_scf184756.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.9e-108  360.9   0.3      2e-97  326.5   0.0    2.0  2  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.5   0.0  1.1e-101     2e-97       1     317 [.      82     410 ..      82     413 .. 0.94
   2 !   32.6   0.1   2.4e-12   4.3e-08     326     361 .]     460     498 ..     456     498 .. 0.89

  Alignments for each domain:
  == domain 1  score: 326.5 bits;  conditional E-value: 1.1e-101
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavsa 97 
                   g+ ++a++++ei+++dge+g lrYRGy+ie+La  +ss  e aylL++g+lPtk+++k f+ e+++++ ++ +    +++++ dahpm++l++a+++
    CDO70645.1  82 GFLNTAVIRSEITYIDGEAGVLRYRGYPIEQLA-LHSSHLESAYLLIYGSLPTKDQFKFFEGEVMRHSVMHSDAEGFFRSFRYDAHPMSMLTSAFAM 177
                   56699****************************.79999999******************************************************* PP

                   HHHHSTT...........CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.-----TTSSHHHHHHHHHHS.....S---HHHHHHHHHHHHH CS
  Citrate_synt  98 lsaddee...........seakeeseeaalrdalkliAklptiaaaiyrarlgreplepddklsyaenflymlrg.....kkpdeeeaklldlalvl 178
                   l+++++e           ++ +++s e + r+ ++li+k+ t+aa++yr+r+gr+ + p ++lsy+ +fly ++      + p++ ++k+ld+++ +
    CDO70645.1 178 LGSYYSEanpslqgqrlyTKGDKTSLETMDRQIYRLIGKATTLAAMAYRVRQGRNFVTPPTGLSYTGSFLYQMDHigeedYVPNPVLEKALDVLFLI 274
                   *************9999733333345555555555******************976688888***********96779999**************** PP

                   HS--SSSHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC-SSSSS--HHHHHHHHHH CS
  Citrate_synt 179 haDHelnaSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGHrvykksDpRakilkela 275
                   haDHelnaS  ++  ++S+l+d+ysaiaag+++l+Gplhgganeav++ml +igs+e +v+++le+v++ke + l GfGHrvyk+sDpR  i+++ a
    CDO70645.1 275 HADHELNASCTTVLQTGSSLVDPYSAIAAGCASLYGPLHGGANEAVIRMLISIGSPE-NVPAFLEAVKKKE-KTLSGFGHRVYKTSDPRSFIVRKTA 369
                   *********************************************************.*********9986.************************* PP

                   HHHHTCHTHHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHH CS
  Citrate_synt 276 eelaeekgkdpllklaeeleevapevlkekeeknlypNvDfy 317
                   +e++  +gkd ll++a++l ++a +++++ + ++l pNvDf+
    CDO70645.1 370 DEVFRVTGKDALLETAMALHDAAMKDEYFIK-RKLAPNVDFW 410
                   *******************************.*********8 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 2.4e-12
                   T--GGGHHHHHHHHHHHHHHHHHHHHH.HT..------E CS
  Citrate_synt 326 gipeelftvlfaisRvaGwlAhileql.ad..nkiiRPr 361
                   g+p ++f+vlfa+ Rv+GwlAh+++ + ++   ki+RPr
    CDO70645.1 460 GFPLDFFPVLFAVPRVVGWLAHWRQMMlQEggVKIWRPR 498
                   9************************876445578****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4079.67
//
Query:       CDO70646.1  [L=210]
Description: hypothetical protein BN946_scf184756.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1573.25
//
Query:       CDO70647.1  [L=1212]
Description: hypothetical protein BN946_scf184756.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-27   94.2   0.0    1.5e-26   92.6   0.0    2.0  1  XPG_I       XPG I-region
    9.9e-22   77.3   0.0    2.5e-21   76.0   0.0    1.7  1  XPG_N       XPG N-terminal domain
  ------ inclusion threshold ------
       0.01   15.3   0.0      0.025   14.0   0.0    1.7  1  XPG_I_2     XPG domain containing
      0.039   14.6   0.4       0.31   11.7   0.0    2.7  3  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   3.3e-30   1.5e-26       1      94 []     804     888 ..     804     888 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 3.3e-30
                 HHHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   1 klmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 +l+gipy++Ap+EAEAqca+L   glvd++i++DsD++lFG+ +vl+n++  ++ k       +ve++ l+++++elgl+r++l+ la+llg+D
  CDO70647.1 804 RLFGIPYITAPMEAEAQCAALLTLGLVDGIITDDSDVFLFGGARVLKNMF--NQSK-------TVECFLLSDLERELGLDRDKLVRLAYLLGSD 888
                 689**********************************************9..4333.......59***************************99 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   5.7e-25   2.5e-21      25      99 ..       2      75 ..       1      77 [. 0.97

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 5.7e-25
                TTEEEEEEHHHHHHHHHHHSE.ETTEE-BS-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHHH CS
       XPG_N 25 egkklaiDaslwlyrfliavreqlgnalentshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserrq 99
                egk +aiD s+w+y+f  ++r+++g  l n  h+ g+++r+++ll++gikP+fVFdg+ap+lk ++++ r++++ 
  CDO70647.1  2 EGKSMAIDSSIWIYQFQATMRDKEGRGLVN-AHVLGFLRRICKLLFYGIKPVFVFDGGAPTLKMSTIAERKKKKT 75
                799***************************.****************************************9986 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.7e-06     0.025      12     101 ..     802     872 ..     779     962 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.7e-06
     XPG_I_2  12 aLknrwkakditevvpgEADkfcAvlA.rklgcaVLTsDSDLlvhdlgeegsvifldsielssrvkkaepksklsiratkyrpaeiakklg 101
                  L+    ++ +++  p EA ++cA+l    l + + T+DSD++++  g++    ++++ ++ +                 + + ++ ++lg
  CDO70647.1 802 MLR---LFGIPYITAPMEAEAQCAALLtLGLVDGIITDDSDVFLF-GGARVLKNMFNQSKTVE----------------CFLLSDLERELG 872
                 455...788899999**********99899***************.33333333343333333................222333333333 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.9   8.7e+03      38      72 ..     210     243 ..     207     256 .. 0.57
   2 ?   -3.1   0.1       2.7   1.2e+04      39      54 ..     761     778 ..     737     801 .. 0.59
   3 ?   11.7   0.0     7e-05      0.31      17      46 ..     887     916 ..     876     952 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.9
  5_3_exonuc  38 ygsleeilenldelkekklkekLeenkeearlskk 72 
                 y+ l+++l+++++   +  ke++++ k++  l ++
  CDO70647.1 210 YKRLQSMLRKAKTPL-DFSKEQIKNLKQRNALTQQ 243
                 677777777665322.2344555555544444444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.7
  5_3_exonuc  39 gsleeilenld.elke.k 54 
                 ++++++ +++d e+++ +
  CDO70647.1 761 KDIDAVRREIDeEIRDlN 778
                 456666666653333322 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 7e-05
  5_3_exonuc  17 sDnipGvpgiGektAakLlkeygsleeile 46 
                 sD  +G pg+G+  A++Ll+e+   +++ +
  CDO70647.1 887 SDYTEGLPGVGPVVAMELLNEFPGQDGLHK 916
                 89999*****************99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1212  (0.0676); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 7592.79
//
Query:       CDO70648.1  [L=535]
Description: hypothetical protein BN946_scf184756.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-15   56.1   0.0    1.6e-14   54.4   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
      2e-11   44.4   0.0    5.1e-11   43.1   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
      2e-08   34.1   0.0    3.4e-08   33.4   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    4.5e-08   33.1   0.0    9.6e-08   32.0   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    2.5e-07   30.3   0.0    4.1e-07   29.6   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    2.7e-06   26.8   0.0    4.6e-06   26.1   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
    1.9e-05   24.3   0.0    3.4e-05   23.5   0.0    1.4  1  MTS              Methyltransferase small domain
    5.9e-05   23.7   0.0    0.00014   22.5   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
     0.0032   17.4   0.0      0.037   13.9   0.0    2.1  1  Methyltransf_8   Hypothetical methyltransferase
     0.0052   16.9   0.0      0.014   15.6   0.0    1.7  1  FtsJ             FtsJ-like methyltransferase
     0.0068   15.8   0.0      0.013   14.9   0.0    1.5  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.044   13.2   0.0       0.28   10.6   0.0    2.2  2  Methyltransf_4   Putative methyltransferase
      0.058   13.1   0.0       0.12   12.2   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
       0.49   10.7   5.6       0.23   11.7   0.3    2.6  2  TTSSLRR          Type III secretion system leucine rich repea


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.2e-17   1.6e-14       1      97 []      74     175 ..      74     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.2e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH..TTT..TEEEEESBC.CGBSSSTTTEEEEEEESTGGG.SSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee..egl..nvefvqgda.edlpfedgsfDlvvssgalhh.lsdedlekalke 88 
                      vLdlGcGtG +++++ak +++++v+g+D  + + + ++ ++    ++l  +v++v+gd+ ++lpfed++f +v +++   + +++  ++++l e
       CDO70648.1  74 VLDLGCGTGLWAIEAAKFWPHCRVVGFDKLAIQPDLTQVKLGIdcRELseRVKWVHGDFlDRLPFEDDQFEFVRICNI-GLaVPEIFWQDLLLE 166
                      9***************99989********999999988777443444478*********555***********99655.443788899****** PP

                      HHHHEEEEE CS
  Methyltransf_25  89 iarvLkpgG 97 
                      ++rvLkpgG
       CDO70648.1 167 CSRVLKPGG 175
                      ********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0     4e-14   5.1e-11       1      94 [.      75     177 ..      75     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4e-14
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHH..HHHHHHCCHHT-..EEEETTEECCC.TSS-TT-EEEEEEES-CCC-..CCHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskeml..klakekaseegl..kvefvvadaek.lpfednsfDlvvssevlhhv..edpekalkeia 85 
                      Ld+GcGtG+ a + ak    +rvvg+D  + +   +++k  +  ++l  +v++v++d+ + lpfed++f +v + +    v    ++++l e+ 
       CDO70648.1  75 LDLGCGTGLWAIEAAKFWphCRVVGFDKLAIQPdlTQVKLGIDCRELseRVKWVHGDFLDrLPFEDDQFEFVRICNIGLAVpeIFWQDLLLECS 168
                      8**************99899*******55444322666777777777999********9769**********99997777755479******** PP

                      HHEEEEEEE CS
  Methyltransf_11  86 RvLkpgGll 94 
                      RvLkpgG +
       CDO70648.1 169 RVLKPGGCI 177
                      *******76 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.7e-11   3.4e-08       6     114 ..      73     193 ..      68     272 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.7e-11
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiD...iseeaielArenaqklgldnveFeqgdiee.leklledekfDli.lsn.evlnaladpdki 93 
                      +vlDlGCGtG  ++e+a +  p+++vvG+D   i+++  ++   +  +  +++v+  +gd+ + l+  +ed++f ++ ++n ++     + ++ 
       CDO70648.1  73 SVLDLGCGTGLWAIEAA-KFWPHCRVVGFDklaIQPDLTQVKLGIDCRELSERVKWVHGDFLDrLP--FEDDQFEFVrICNiGLAVPEIFWQDL 163
                      79***************.************5555777777777765555555**************..********634442444666678889 PP

  Methyltransf_31  94 leeiervlkpggilliedpr.........l 114
                      l e +rvlkpgg + i + +          
       CDO70648.1 164 LLECSRVLKPGGCIEIMEEDlifpagrtrK 193
                      9999********987777665555554440 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   7.5e-11   9.6e-08      20     119 ..      68     181 ..      52     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 7.5e-11
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd..p 98 
                      +r++ +vLd+GcGtG ++ ++++++    v+g+D   ++ ++ +           ++ k+++  f  +  ++++++f+++   +    vp   +
       CDO70648.1  68 ERPPDSVLDLGCGTGLWAIEAAKFWPhcRVVGFDKLAIQPDLTQvklgidcrelsERVKWVHGDF-LDRLPFEDDQFEFVRICNIGLAVPEifW 160
                      78999****************9996445*************999**********99999999999.999999********9999999999555* PP

  Methyltransf_23  99 pellrqiatllkpgGylllse 119
                        ll    + lkpgG ++++e
       CDO70648.1 161 QDLLLECSRVLKPGGCIEIME 181
                      ******************998 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.2e-10   4.1e-07      44     153 ..      67     181 ..      52     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.2e-10
                      -S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEE...S-HHHHHHHHHHHHHHTSSTEEEEE--T.TT-TTS-T-EEEEEEE.S-GGG-S-H CS
  Ubie_methyltran  44 avkrgakvlDvagGtgDlafklsdsvgekgkvvvlD...inenmLkvgekklkeegkinieflqana.eeLpfeddsfDvvtvs.fGlrnvtDk 132
                       ++++ +vlD+ +Gtg +a++ ++    + +vv+ D   i++++ +v      +e   ++++++++   +Lpfedd f++v +   Gl  v+++
       CDO70648.1  67 FERPPDSVLDLGCGTGLWAIEAAKFW-PHCRVVGFDklaIQPDLTQVKLGIDCRELSERVKWVHGDFlDRLPFEDDQFEFVRICnIGL-AVPEI 158
                      578899**************988765.5667777772224555444444444455566*******96368**********99862566.56665 PP

                      ..HHHHHHHHHHEEEEEEEEEEE CS
  Ubie_methyltran 133 ..lkaLkeayrvlkpGGrlvvle 153
                        +  L e  rvlkpGG + ++e
       CDO70648.1 159 fwQDLLLECSRVLKPGGCIEIME 181
                      3478999***********99998 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.6e-09   4.6e-06      64     178 ..      72     195 ..      51     226 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.6e-09
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHH...HHHHHHHS.-----TTEEEEES-TTTS---.--SEEEEESSGG...GS-HHHHHHHHH CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlpeV...veaAkehl.sageeervefvgGdffkdslP.eaDaillkrvlh...DwsdekcvklLk 150
                      s++D+G GtG  a ++++ +P+++v+ fD   +    ++ k  +   +++erv++v Gdf  d+lP e D + ++r++       +   + lL 
      CDO70648.1  72 DSVLDLGCGTGLWAIEAAKFWPHCRVVGFDKLAIqpdLTQVKLGIdCRELSERVKWVHGDFL-DRLPfEDDQFEFVRICNiglAVPEIFWQDLLL 165
                     5789*************************9544411133334444456789***********.****9999999999996322445556689999 PP

                     HHHHH--TT-EEEEEE-..---TTS---HH CS
  Methyltransf_2 151 rvkkalpagGkvivvea..vlgadpsgele 178
                     ++ + l++gG + ++e   + +a+++++ +
      CDO70648.1 166 ECSRVLKPGGCIEIMEEdlIFPAGRTRKPD 195
                     9********999888741135665555544 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.7e-08   3.4e-05      31     137 ..      70     179 ..      43     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.7e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHH..HHHHHHHHHHTTGC..EEEEE-STTTTST..TS-EEEE.EE---STTTCHCHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarA..lesakenleankle..vevvasdvleeve..ekkfdli.vsNPPfhagkatelavaeeli 122
                   ++vlDlGcG+G+ ++++ak++p+ +v+ +d+ a    l+  k  +   +l+  v+ v+ d l+ ++  +++f+++ ++N     g a+ +  +++l+
  CDO70648.1  70 PPDSVLDLGCGTGLWAIEAAKFWPHCRVVGFDKLAIQpdLTQVKLGIDCRELSerVKWVHGDFLDRLPfeDDQFEFVrICN----IGLAVPEIFWQDLL 164
                 3456*********************99999998765411555566666667767899999999998755589999987888....56666666888899 PP

                 HHHHHHEEEEEEEEE CS
         MTS 123 aeAkeaLkegGeLli 137
                  e  ++Lk+gG + i
  CDO70648.1 165 LECSRVLKPGGCIEI 179
                 999999999987655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-07   0.00014       1      99 []      75     177 ..      75     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdir..evldnir 90 
                      L++GcGtG  + + ++  p+++++g D  + + + ++ kl   +++  ++v++ + d ld+ +   ++f  v ++n   ++++i   ++l ++ 
       CDO70648.1  75 LDLGCGTGLWAIEAAKFWPHCRVVGFDKLAIQPDLTQVKLGIDCRELSERVKWVHGDFLDRLPFedDQFEFVRICNIGLAVPEIFwqDLLLECS 168
                      8*******9999999999*********99999999*************************99999****************776444******* PP

  Methyltransf_12  91 klLkpgGrl 99 
                      ++LkpgG++
       CDO70648.1 169 RVLKPGGCI 177
                      *******86 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.9e-05     0.037     100     158 ..     117     181 ..      62     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
                     ESS-SSTTE..EES-T.TS-S--TT-EEEEEEE.S---SS-..HHHHHHHHHHHEEEEEEEEEEE CS
  Methyltransf_8 100 dlvavnerv..vacdl.akvPledesvdvavfc.lslmgtn..ladflkeanrvlkvGGllkvae 158
                     d   + erv  v  d+  ++P ed+  + + +c + l + +  ++d l e  rvlk+GG + + e
      CDO70648.1 117 DCRELSERVkwVHGDFlDRLPFEDDQFEFVRICnIGLAVPEifWQDLLLECSRVLKPGGCIEIME 181
                     444444554223446559******999866555366766653389****************9988 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05     0.014      19      72 ..      67     134 ..      50     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
                 S-.TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..............HHH.TTEEEECS-CCC CS
        FtsJ  19 fk.pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..............apl.pgvttiqgditd 72 
                 f+ p + v+Dlg+++G w+  +++   + ++vv++D   +              + l ++v+ ++gd++d
  CDO70648.1  67 FErPPDSVLDLGCGTGLWAIEAAKFWPH-CRVVGFDKLAIqpdltqvklgidcrE-LsERVKWVHGDFLD 134
                 4336678******************976.********999666666666654422.24677777777765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05     0.013     156     194 ..      65     102 ..      31     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
        PrmA 156 eklvkegeevlDvGtGSGiLaiaaakLg.akkvvavDiDe 194
                  ++ ++ ++vlD+G+G+G+ ai aak+  + +vv+ D  +
  CDO70648.1  65 HEFERPPDSVLDLGCGTGLWAIEAAKFWpHCRVVGFD--K 102
                 55678899**************999985145677765..4 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022      0.28       5      33 ..      74     102 ..      71     148 .. 0.90
   2 ?   -0.8   0.0      0.72   9.2e+02      96     116 ..     160     180 ..     158     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++GcG G + ++ Ak  P++ ++G ++
      CDO70648.1  74 VLDLGCGTGLWAIEAAKFWPHCRVVGFDK 102
                     89************************875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.72
                     SHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_4  96 qpellkelarvLkkgGvlela 116
                      + ll e  rvLk+gG +e++
      CDO70648.1 160 WQDLLLECSRVLKPGGCIEIM 180
                     567888999********9976 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     9e-05      0.12      40      78 ..      64     102 ..      49     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9e-05
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDl 78 
                      +++ e+ + svl+LG GtGl  + +a+  p+++v+  D 
       CDO70648.1  64 MHEFERPPDSVLDLGCGTGLWAIEAAKFWPHCRVVGFDK 102
                      566778889***********************9986665 PP

>> TTSSLRR  Type III secretion system leucine rich repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.9      0.64   8.2e+02      15      40 ..     262     287 ..     224     288 .. 0.63
   2 ?   11.7   0.3   0.00018      0.23      32      50 ..     442     460 ..     425     464 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.64
                 XXXXXXXXXXXX..........--HHHHHHHHH CS
     TTSSLRR  15 ieithdlsspaeqga.......qteeeYlaaWs 40 
                  ++th+        +       q+ e  + aW 
  CDO70648.1 262 SSSTHSG-------SearecfvQDHEKLKEAWM 287
                 2333333.......2445566799999999996 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHTS-TTS CS
     TTSSLRR  32 eeeYlaaWseWernappee 50 
                  ee++++W++Wer ++p+ 
  CDO70648.1 442 REEFEREWAAWERSRRPAS 460
                 589**************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.55
# Mc/sec: 2905.56
//
Query:       CDO70649.1  [L=396]
Description: hypothetical protein BN946_scf184756.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-18   66.5   0.1    3.7e-18   66.0   0.1    1.2  1  Peptidase_M24    Metallopeptidase family M24
  ------ inclusion threshold ------
       0.11   11.8   0.1       0.53    9.6   0.0    1.9  2  ThrE             Putative threonine/serine exporter
       0.14   12.3   0.9         13    5.9   0.0    3.3  3  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   6.1e-22   3.7e-18       2     164 ..      25     207 ..      24     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 6.1e-22
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT..............TCEESSSSEEEEGGGGGSTTTBC......SSSB--TTEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg..............arglafppivasgenaavlhytp......ndrvlkegdlv 77 
                    +++ aa+i++++++++++   +g +  +l+ e ++   +++g              ++g+afp  +++++n+av+h++p      ++++l +gd+v
     CDO70649.1  25 KYKTAADIVNNVMKKLVSLAVEGAKVIDLCVEGDKL--IEQGtgavynksvkgvkvSKGIAFP--TCVSVNNAVAHFSPlesdpsSSQTLAKGDVV 116
                    6899**************999*************77..666668999999999**********..**************9988866888******* PP

                    EEEEEEEETTEEEEEEEEEECS.....SGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEE CS
  Peptidase_M24  78 lidagaeydgyasDitrTvlvG.....kftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhde 164
                    ++ +ga++dg+a+  + T++vG     + t + +++++a++ a e a+++vk G++ +++ +a+ +v+++ g  k++   l     ++v d+
     CDO70649.1 117 KLHLGAHIDGFAAIAAETLVVGasveePVTGRKADVIQAAWTAAEVAMRLVKVGNKNWQVTDAVNKVAAAFGC-KPVEGMLSCEQSQNVIDG 207
                    **********************7643333335888**********************************9888.665555444444544444 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.15   8.7e+02      54      89 ..       8      43 ..       2      49 .. 0.79
   2 ?    9.6   0.0   8.8e-05      0.53       3      37 ..     159     193 ..     158     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.15
        ThrE 54 esittvrrvrsrgvnleklsevnelsreiaageisl 89
                e++++ ++ ++   +++k +   +++++++++ +sl
  CDO70649.1  8 EPTKQEETNNTAAADFTKYKTAADIVNNVMKKLVSL 43
                44444555688999*****************98887 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.8e-05
        ThrE   3 ilrlGeiLlesGaetyrvedtmkriaralgleeve 37 
                 ++++++ L++ G + ++v d+++++a+a+g++ ve
  CDO70649.1 159 AAEVAMRLVKVGNKNWQVTDAVNKVAAAFGCKPVE 193
                 6789999***********************98776 PP

>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.061   3.7e+02      21      57 ..      13      49 ..       8      52 .. 0.81
   2 ?    5.9   0.0    0.0022        13      36      57 ..     175     196 ..     153     214 .. 0.79
   3 ?    1.1   0.0     0.071   4.3e+02      23      54 ..     260     290 ..     253     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.061
                     STT-EEEEEEESS---HHHHHHHHHHHHT-EE-TTTT CS
  Coatomer_g_Cpla 21 seaeavetfaLssvksleeavdkliellgmqplegsd 57
                     +e+++++   ++++k+  + v+++++ l   ++eg +
       CDO70649.1 13 EETNNTAAADFTKYKTAADIVNNVMKKLVSLAVEGAK 49
                     346777888899*************999888888765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0022
                      -HHHHHHHHHHHHT-EE-TTTT CS
  Coatomer_g_Cpla  36 sleeavdkliellgmqplegsd 57 
                      ++++av+k+   +g++p+eg  
       CDO70649.1 175 QVTDAVNKVAAAFGCKPVEGML 196
                      6889***********9999865 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.071
                      T-EEEEEEESS---HHHHHHHHHHHHT-EE-T CS
  Coatomer_g_Cpla  23 aeavetfaLssvksleeavdkliellgmqple 54 
                      +e++ t++L ++k+ +++ +++ +  g  p++
       CDO70649.1 260 KESTVTYQL-KMKTSRAVFSEVQKKAGAFPFN 290
                      577778888.8888888888888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2328.56
//
Query:       CDO70650.1  [L=428]
Description: hypothetical protein BN946_scf184756.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-19   68.1   0.0    9.4e-09   34.9   0.0    2.0  2  Aminotran_1_2   Aminotransferase class I and II
    1.9e-09   36.8   0.0    2.6e-09   36.4   0.0    1.1  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   6.5e-12   5.8e-08      32     154 ..      86     204 ..      69     208 .. 0.88
   2 !   34.9   0.0     1e-12   9.4e-09     180     363 .]     207     411 ..     203     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 6.5e-12
                    HHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTT CS
  Aminotran_1_2  32 laggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseed 127
                    ++  +  +y+p+ g pel+  l+ +   s++ k      +++g+G++ li  +  +l l+pgd+ l+ +p+ya + +++ + ++e++++     ++
     CDO70650.1  86 QELAKGLQYSPSAGIPELNDWLIGLQEYSHGRKRGEGWGLCFGTGSSDLIYKVVNAL-LDPGDVALIEAPVYAGIVPMFHATRCEIIEVG---GDS 177
                    55566789***************999966666666667*******************.9*******************************...689 PP

                    TEE-HHHHHHHHTTHHCTTETEEEEEE CS
  Aminotran_1_2 128 fhldlealeealkeapegnkktkvilv 154
                     + d ++l e+l++ p+g++k+kv+++
     CDO70650.1 178 HGTDTKGLRELLENWPAGKPKPKVLYT 204
                    99******************9999875 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 1e-12
                    TTEEEEEEETTTTCBSSSS.HTHHHHGGSTTSTT....EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHH CS
  Aminotran_1_2 180 ynlllfvDeaYagfvfgsl.davatranveeepn....llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdal 268
                    +n+l++ D+ Y  ++fg+  ++ + ++++e++      ++   slsK ++  G R+G++++ + +++++     + +   ++l+q +++  l+   
     CDO70650.1 207 HNFLILEDDPYYYLYFGDApRPPS-YFTLERDQPevgrVIRFDSLSKVLS-SGMRIGFLSAPQVIIDAVILHTMTSNLqpPTLTQVLALRLLKEWG 300
                    89***************8754444.999998888899**********996.699**************9999999999999999999999999754 PP

                    HHHH..HHHHHHHHHHHHHHHHHHHHHHS..TEEEECCS.CSSEEEEEETHH........CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEE CS
  Aminotran_1_2 269 lkqs..eleemrqrlqkrrkelrdeLael..glkvlasq.sgmflltdlsae........takelskkLleevgvyvtpgtsftv....pgrlRit 347
                          +++  +q ++++r+++   +++   gl+ ++ + +gmf +  l+          ++  +  k le+ gv+ +pgt ++     ++ +R +
     CDO70650.1 301 YDGLraHVDRVAQFYHAKRDVFEGFMKKYlgGLAEWDTPeAGMFFWFKLKINegdagegdSEAIIRTKALEN-GVLALPGTVCHPggqkTAYVRAS 395
                    33225499999999999999998888777**888887776******99998899999986666666669999.***************999***** PP

                    CTTS-HHHHHHHHHHH CS
  Aminotran_1_2 348 vAglteeeleelveal 363
                    ++ l+++++ee++++l
     CDO70650.1 396 FSLLPPDQVEEALRRL 411
                    *************997 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.9e-13   2.6e-09     204     418 ..     205     424 ..     199     427 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.9e-13
                     SSTT-EEEEE-TTSS-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHC-S---HHHHHHHHHHHHH CS
  Aminotran_MocR 204 aapdfrifaddayavhdlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvassedniawlkkylGlqsiGpdkveqlrhvkflkd 298
                        +f i+ dd y     ++++++ + + +l rd     r + + s sk+  +G  ++f+++ +  i  +  ++    + p  + q+  +++lk+
      CDO70650.1 205 VPHNFLILEDDPYYY-LYFGDAPRPPSYFTLERDQPEVGRVIRFDSLSKVLSSGMRIGFLSAPQVIIDAVILHTMTSNLQPPTLTQVLALRLLKE 298
                     556899999**9975.557**************************************************************************97 PP

                     ..STHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSEEE---SBSS-E..EE.....EESSS-HHHHHHH.HHHCTEE---TTTTSSTT--SSS CS
  Aminotran_MocR 299 ..yeGlealmrdhaeliapkfeavlevleaelggaevatwteprGGyfi..sl.....dtldgvakrvvkl.aeeaGvsltaaGatypaGedpkd 383
                       y+Gl+a++ + a++   k +  +  +++ lgg  +a w +p+ G f    l     d+ +g ++ +++  a e Gv   +    +p G+  k 
      CDO70650.1 299 wgYDGLRAHVDRVAQFYHAKRDVFEGFMKKYLGG--LAEWDTPEAGMFFwfKLkinegDAGEGDSEAIIRTkALENGVLALPGTVCHPGGQ--KT 389
                     5578****************98888888888875..8*********88622452222244455556677643789999999999999*998..67 PP

                     -EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT CS
  Aminotran_MocR 384 rnirlaptlppleevetamdvvatcvklaseekla 418
                     + +r + +l p ++ve+a++ +   +  a +e +a
      CDO70650.1 390 AYVRASFSLLPPDQVEEALRRLRQVILDARAEAKA 424
                     899999999999******99999988888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 2685.99
//
Query:       CDO70651.1  [L=770]
Description: hypothetical protein BN946_scf184756.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-58  197.3   0.2      7e-58  195.8   0.0    1.9  3  RasGAP    GTPase-activator protein for Ras-like GTPase
    1.3e-38  132.2   0.3    3.3e-38  130.9   0.3    1.8  1  RasGAP_C  RasGAP C-terminus
  ------ inclusion threshold ------
      0.069   13.1   1.8        0.3   11.0   0.2    2.7  2  IL2       Interleukin 2
       0.26   11.9   3.7         19    6.0   0.1    3.0  2  YabA      Initiation control protein YabA


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.0   1.6e-61     7e-58       2     208 .]     177     384 ..     176     384 .. 0.98
   2 ?   -3.8   0.1       1.9   8.4e+03      93     125 ..     427     459 ..     401     473 .. 0.69
   3 ?   -2.9   0.1      0.99   4.4e+03     117     147 ..     608     638 ..     547     648 .. 0.56

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 1.6e-61
      RasGAP   2 iseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelDPrkiyeelkkkkesktgkk.sessgkksekeasel 99 
                 +++++  ++e + ++ +llr+n+ vs+++++yt+r+ gq+yLk++l++ +++++e++dlnle++P k+ye+++++ e++tg+   ++++ + +++a  +
  CDO70651.1 177 FQSVLSSQFETATEFGSLLRANTPVSRMMTTYTRRGPGQSYLKSVLAERINSLIEHKDLNLEINPVKVYEQMIQQIEEETGSLpPNLPRGVPPEVAAAN 275
                 7889999********************************************************************999999865899************ PP

      RasGAP 100 ekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrrnLtl 198
                   v+ ++  +l+ L e++n++l +I+ s+e++P+giR+ickqir ++++k+pda++  i+ lig+f+flrf++Paiv+P+ ++lv+  + +  rr+Ltl
  CDO70651.1 276 ADVQAIIAPRLTMLMEIANSFLLTIIDSMESVPYGIRWICKQIRSLTRRKYPDATDYAICSLIGGFFFLRFINPAIVTPQAYMLVEGVPAKHPRRTLTL 374
                 *************************************************************************************9999********** PP

      RasGAP 199 iaKllqnlan 208
                 iaK+lqnlan
  CDO70651.1 375 IAKMLQNLAN 384
                 ********97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.9
      RasGAP  93 ekeaselekvsqmleknldkLkelvneildsIf 125
                  ++++ l+k +  ++ +l++L++  + il++I 
  CDO70651.1 427 MDQYMALSKKDLVINITLNELYNTHSLILQHIE 459
                 456666777777777777788877777777775 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.99
      RasGAP 117 vneildsIfksleqlPvgiRiickqirekvk 147
                   + l++++k++++  + +R ++ q +  ++
  CDO70651.1 608 ETKSLEAVYKTICDHNNYLRSQLEQYKAYLQ 638
                 3445666677776666666666666655555 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.3   7.4e-42   3.3e-38       1     137 []     558     694 ..     558     694 .. 0.91

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 7.4e-42
    RasGAP_C   1 lvelkkkalenlkeLeelgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk....lp 95 
                 lv++++k++e+l+eLee+++++r+++y+ + +e+a+++ ++g+lrek+ +E++sle+++kt++++nnyl+sqle+Ykay++nv+ + +k+kg+    + 
  CDO70651.1 558 LVRKGIKVKEMLRELEEQKIVDRADGYKLMQDEVAAELVHLGNLREKVLAETKSLEAVYKTICDHNNYLRSQLEQYKAYLQNVRLTASKEKGSstgvG- 655
                 689************************************************************************************99997756552. PP

    RasGAP_C  96 fskqyfkkrelkksgklpkfgsykysakqLeekgVLleiegl 137
                          + kk  k    g+y+++++qLe++g+++e++++
  CDO70651.1 656 ---VITVGGKEKKPAKPVVHGPYRFTHAQLEKEGIIVESNVP 694
                 ...23345556888899999******************9975 PP

>> IL2  Interleukin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.23     1e+03      64      79 ..     463     478 ..     423     488 .. 0.75
   2 ?   11.0   0.2   6.7e-05       0.3      36     116 ..     566     652 ..     544     656 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.23
                 --SGGGHHHHHHTHHH CS
         IL2  64 atelkhlqcleeelkp 79 
                   e +hl+ l +el+p
  CDO70651.1 463 PNEKQHLRILTDELGP 478
                 36889********998 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHBTT--HHHHTCEEEE-BSS--SGGGHHHHHH....THHHHHHHHH.HHHHHSS...--TTHHHHHHHHHHHHHHHT-SSS CS
         IL2  36 qlllekvknyknlklsrmltfklylPkkatelkhlqclee....elkpleevln.laqsknf...eledikelisninvtvlklkGset 116
                 +++l++++  +++ + r   +kl   + a+el hl  l e    e k+le v + + ++ n+   +le+ k +++n++ t+ k kGs t
  CDO70651.1 566 KEMLRELE--EQKIVDRADGYKLMQDEVAAELVHLGNLREkvlaETKSLEAVYKtICDHNNYlrsQLEQYKAYLQNVRLTASKEKGSST 652
                 55555555..334456777889999999*******9998744446799999986356666653337889999***************98 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7    0.0063        28      12      59 ..      44     102 ..      37     127 .. 0.77
   2 ?    6.0   0.1    0.0042        19       4      62 ..     589     647 ..     586     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........XXXXXXX CS
        YabA  12 eleeqleelleeleelkeelaelleenaeLeleneklrerl...........eeeekke 59 
                 e+e++l++ +++l+elk+++++  ++n  Le + + l +r+           e++e ++
  CDO70651.1  44 EVEDELGRAQKRLRELKARISAQSKRNFVLERDVRFLDSRIglliqnrmaldEQNEVEK 102
                 68999****************************99999998887766555442222222 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekek 62 
                 +e+ ++l +l +  e++l+e ++l++  ++++++n+ L+ + e+ +  l++ + +++++
  CDO70651.1 589 DEVAAELVHLGNLREKVLAETKSLEAVYKTICDHNNYLRSQLEQYKAYLQNVRLTASKE 647
                 57888889999999999***************************999995433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.50
# Mc/sec: 4641.63
//
Query:       CDO70652.1  [L=1100]
Description: hypothetical protein BN946_scf184756.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-43  147.1   0.4      1e-42  145.4   0.4    2.0  1  Telomerase_RBD  Telomerase ribonucleoprotein complex - RNA bi
    3.6e-12   46.3   0.5    1.4e-06   28.0   0.0    3.4  4  RVT_1           Reverse transcriptase (RNA-dependent DNA poly


Domain annotation for each model (and alignments):
>> Telomerase_RBD  Telomerase ribonucleoprotein complex - RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.4   1.2e-46     1e-42       1     133 [.     466     601 ..     466     602 .. 0.95

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1.2e-46
                     HHHHHHHHHHHHHS-HHHH-SCHHHHHHHHHHHHHCCH---SSS--TTTS-S--GGG-GGG-S...S.S------HHHHHHHHHHHHHHHHHHHH CS
  Telomerase_RBD   1 qVvaFvravlkkvvpkellGsehnkkvllknvkkfvklrrfeslslhevmqglkvsdvewlsp...ekeksqklslsdaekrkellseflywlfd 92 
                     +V+++ + v+k v+p++l+Gs +n+++ ++nvk++++ rr+es+slh+v+q +++sd+ewl p   +++k++++s +da kr+ell+eflyw fd
      CDO70652.1 466 EVYRYAVLVTKAVIPRALWGSDKNFNITMENVKHMITGRRYESFSLHRVLQDIQTSDCEWLMPpgqSAQKQTRVSVTDALKRRELLEEFLYWYFD 560
                     599***********************************************************755566777788888****************** PP

                     TCHHHHHHHH-EEEE--SSS-SEEEE-HHHHHHHHHHHHHH CS
  Telomerase_RBD  93 slliplirsfFYvTessktrnrlfyFrkdvWrkltkpalak 133
                     s++ipl++++FY+Tess+ rnr++yFr+d W+ l++p ++k
      CDO70652.1 561 SFIIPLLKTTFYITESSAFRNRVLYFRHDDWNILCAPLVEK 601
                     **********************************9998876 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       0.6   5.4e+03       7      24 ..     104     121 ..     102     122 .. 0.87
   2 ?   -0.7   0.0     0.095   8.5e+02      43      77 ..     370     405 ..     360     406 .. 0.82
   3 !   14.1   0.0   2.8e-06     0.025      68     133 ..     714     772 ..     651     773 .. 0.87
   4 !   28.0   0.0   1.5e-10   1.4e-06     117     204 ..     823     909 ..     797     931 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.6
                 S-EEE......-THHHHC CS
       RVT_1   7 gsyRpisllsvdykalnk 24 
                 ++ Rp s+l+  y+++n+
  CDO70652.1 104 KGSRPSSILTAGYRKVNQ 121
                 788************996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.095
                 --HHHH..............HCCHTS--EEEEEEBC CS
       RVT_1  43 pgfrpgrstldav.edllkalkkkkkaklllklDlk 77 
                  g r+    l+av ++l k +++++k+++ + lDl+
  CDO70652.1 370 QGSRKTPKRLKAVlNYLEKMIWRHRKCRYKSLLDLS 405
                 456666666788889999****************96 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.8e-06
                 --EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB-- CS
       RVT_1  68 aklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglp 133
                 + +++k+D++ +Fd+++  +ll+ l ++ v+        +++ +r  +v+  g ++++ry+kk lp
  CDO70652.1 714 KLYFVKVDVQACFDTIEQTKLLEILRELLVE-------DAYMLQRYGAVSKAGDKIQRRYVKKALP 772
                 579****************************.......568889999999999999****999998 PP

  == domain 4  score: 28.0 bits;  conditional E-value: 1.5e-10
                 .......TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T........TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-E CS
       RVT_1 117 rvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra..kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtk 204
                 ++++     + +  g+pqGsvlS ll+++f  +l+r+  + +   ++ l r +DD l+++++++++ + +++v++   e+g+ i+++K+ 
  CDO70652.1 823 KIKN---DYYRQVVGIPQGSVLSALLCSFFYGDLERSKFRFTedDECILMRLIDDWLLITTNRSKAMQFYDMVSAGHPEYGCFIAKDKSL 909
                 3333...6778899*********************9988766999*******************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.52
# Mc/sec: 6414.36
//
Query:       CDO70653.1  [L=208]
Description: hypothetical protein BN946_scf184756.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-09   36.2   7.7    5.8e-05   22.9   0.0    3.6  3  TPR_2     Tetratricopeptide repeat
      1e-06   29.0   0.7     0.0024   18.5   0.0    3.3  3  TPR_14    Tetratricopeptide repeat
    5.4e-06   26.8   8.1    5.4e-06   26.8   0.8    3.4  4  TPR_19    Tetratricopeptide repeat
    1.5e-05   25.1   1.3    2.2e-05   24.6   0.3    1.8  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      4e-05   23.3   9.2     0.0069   16.2   0.1    3.9  4  TPR_1     Tetratricopeptide repeat
    5.6e-05   22.9   0.5        2.1    8.5   0.0    3.4  3  TPR_7     Tetratricopeptide repeat
    0.00015   21.4   0.4       0.37   10.5   0.1    2.5  2  TPR_11    TPR repeat
    0.00018   21.5   7.8       0.15   12.3   0.5    3.5  4  TPR_8     Tetratricopeptide repeat
    0.00032   21.2   1.6        2.1    9.1   0.0    3.4  3  TPR_6     Tetratricopeptide repeat
     0.0021   18.2   0.1     0.0051   16.9   0.1    1.7  2  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.3   0.3       0.21   12.3   0.2    2.7  2  TPR_16    Tetratricopeptide repeat
      0.013   15.8   1.9       0.18   12.1   0.3    2.7  2  TPR_12    Tetratricopeptide repeat
      0.045   13.7   0.4      0.089   12.7   0.4    1.5  1  DUF4919   Domain of unknown function (DUF4919)
       0.18   11.5   7.0        1.4    8.5   2.2    2.4  2  TPR_21    Tetratricopeptide repeat-like domain


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4    0.0037       4.7       2      28 ..      27      53 ..      26      56 .. 0.87
   2 !   22.9   0.0   4.5e-08   5.8e-05       2      34 .]      99     131 ..      98     131 .. 0.95
   3 !    8.3   0.6    0.0022       2.8       2      29 ..     133     160 ..     132     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0037
       TPR_2  2 ealynlGlayyklgdyeeAleafekAl 28
                + l + G+  ++ g++++Al+ + ++l
  CDO70653.1 27 KELKEKGDKSFQEGKLKDALASYHQSL 53
                6677889999**************998 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 4.5e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +++ n+ +++++++++++A+e  +kAl+l+P+n
  CDO70653.1  99 KIYSNMSQCHLANQNWKRAVETADKALSLNPKN 131
                 5799***************************97 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0022
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +al++ ++a  +lg +e+A++ +e  ++
  CDO70653.1 133 KALFRKAKAQGELGYFEKAEKILEDLIK 160
                 69******************99987765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.1   2.7e+03      13      28 ..      38      53 ..      36      60 .. 0.84
   2 !   18.5   0.0   1.9e-06    0.0024       9      43 ..     106     140 ..     100     141 .. 0.92
   3 !    8.8   0.1    0.0026       3.3       3      31 ..     134     162 ..     133     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.1
      TPR_14 13 alGdpdeAiallrral 28
                + G++++A+a +++ l
  CDO70653.1 38 QEGKLKDALASYHQSL 53
                6799999999998765 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.9e-06
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + +la++++++A++ +++al+l+P+++ a+++ a+
  CDO70653.1 106 QCHLANQNWKRAVETADKALSLNPKNRKALFRKAK 140
                 55899***************************997 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0026
      TPR_14   3 allalaeallalGdpdeAiallrralala 31 
                 al + a+a  +lG +++A+++l++++++a
  CDO70653.1 134 ALFRKAKAQGELGYFEKAEKILEDLIKDA 162
                 556667788889**************964 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.33   4.3e+02       2      18 ..      37      53 ..      36      63 .. 0.85
   2 !   10.5   0.2   0.00053      0.68      12      51 ..      79     124 ..      59     125 .. 0.90
   3 !   26.8   0.8   4.2e-09   5.4e-06       2      55 ..     109     162 ..     108     167 .. 0.94
   4 ?   -2.3   0.0       5.3   6.8e+03      46      62 ..     172     188 ..     170     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.33
      TPR_19  2 laegdyaeAlalleqal 18
                ++eg++ +Ala + q l
  CDO70653.1 37 FQEGKLKDALASYHQSL 53
                6899*****99999875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
      TPR_19  12 alleqalqedpk......naearllLAeallalgqldeAealLdal 51 
                 ++  qa qe+pk      ++ +  ++ +++la+ +++ A ++ d++
  CDO70653.1  79 EAVDQAAQEKPKtevdilQEKIYSNMSQCHLANQNWKRAVETADKA 124
                 6788999******99999***********************98875 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 4.2e-09
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 la+++  +A++   +al+ +pkn  a+ + A+a+ +lg +++Ae++L++l +++
  CDO70653.1 109 LANQNWKRAVETADKALSLNPKNRKALFRKAKAQGELGYFEKAEKILEDLIKDA 162
                 899*********************************************998875 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 5.3
      TPR_19  46 alLdalpeedpddarya 62 
                 + Ld+l ++d+  +r++
  CDO70653.1 172 KELDRLRAMDKERERAH 188
                 67899988888877766 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.3   8.1e+03      72      77 ..      42      47 ..      35      59 .. 0.52
   2 !   24.6   0.3   1.7e-08   2.2e-05      29      81 ..     104     157 ..      84     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.3
                HHHHHH CS
      ANAPC3 72 yeeAia 77
                +++A+a
  CDO70653.1 42 LKDALA 47
                333333 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.7e-08
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  ++c++ n+++krA e ++ka  ln+k+ ++++ +A+++ +L+ +e+A+++Le 
  CDO70653.1 104 MSQCHLANQNWKRAVETADKAlSLNPKNRKALFRKAKAQGELGYFEKAEKILED 157
                 38*************************************************996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.3    0.0024       3.1       1      28 [.      26      53 ..      26      55 .. 0.87
   2 !   16.2   0.1   5.4e-06    0.0069       3      34 .]     100     131 ..      98     131 .. 0.92
   3 ?    2.7   0.3     0.096   1.2e+02       2      22 ..     133     153 ..     133     156 .. 0.90
   4 ?   -1.7   0.0       2.3     3e+03       7      18 ..     193     204 ..     191     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
                HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekAL 28
                ak l+ +G   f+ gk+++Al+ y + L
  CDO70653.1 26 AKELKEKGDKSFQEGKLKDALASYHQSL 53
                567778888889************9987 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.4e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++ n+ ++++ +++++ A+e  +kAL+lnP+n
  CDO70653.1 100 IYSNMSQCHLANQNWKRAVETADKALSLNPKN 131
                 6777779***********************98 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHTT-HHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAle 22 
                 kal++++ a  +lg +++A++
  CDO70653.1 133 KALFRKAKAQGELGYFEKAEK 153
                 6999**********9999986 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.3
                 HHHHHHHTT-HH CS
       TPR_1   7 lGnayfklgkyd 18 
                 +G+++++++k d
  CDO70653.1 193 KGMCFLNKEKVD 204
                 89***9998865 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.13   1.7e+02      11      27 ..      38      55 ..      36      68 .. 0.83
   2 !    8.4   0.0    0.0018       2.3       2      30 ..     101     127 ..     100     133 .. 0.83
   3 !    8.5   0.0    0.0017       2.1       1      24 [.     134     157 ..     134     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
       TPR_7 11 rlGdyeeAielyeqsL.a 27
                ++G+ ++A+  y qsL  
  CDO70653.1 38 QEGKLKDALASYHQSLlY 55
                679999*******98855 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0018
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                 ++n+ +++ + +++++A+e   +  al  
  CDO70653.1 101 YSNMSQCHLANQNWKRAVETADK--ALSL 127
                 789****************9999..5544 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0017
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 aL++ a ++ +lG++e+A++++e 
  CDO70653.1 134 ALFRKAKAQGELGYFEKAEKILED 157
                 68889999************9997 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0011       1.4       1      19 [.      33      51 ..      33      53 .. 0.89
   2 !   10.5   0.1   0.00029      0.37       7      42 .]     111     146 ..     108     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
      TPR_11  1 GdayyeqGkyeeAieaYkk 19
                Gd  ++ Gk+++A+++Y +
  CDO70653.1 33 GDKSFQEGKLKDALASYHQ 51
                7888*************87 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00029
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                  ++++ A+e   kAl l+P+n  a++  ++a+ ++G
  CDO70653.1 111 NQNWKRAVETADKALSLNPKNRKALFRKAKAQGELG 146
                 567888999999*******************99988 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.1   7.8e+03      15      22 ..      21      28 ..      20      36 .. 0.62
   2 ?   -1.4   0.1       2.9   3.7e+03      12      26 ..      37      51 ..      31      55 .. 0.76
   3 !   12.0   0.1   0.00016       0.2       2      34 .]      99     131 ..      98     131 .. 0.94
   4 !   12.3   0.5   0.00012      0.15       2      29 ..     133     160 ..     133     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.1
                T-HHHHHH CS
       TPR_8 15 gdyeeAke 22
                +++e Ake
  CDO70653.1 21 KKLETAKE 28
                66666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
                HHTT-HHHHHHHHHH CS
       TPR_8 12 lklgdyeeAkeyyek 26
                ++ g+++ A ++y +
  CDO70653.1 37 FQEGKLKDALASYHQ 51
                577888888888855 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00016
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++y n+++++l  ++ + A+e+  kal+l+p+n
  CDO70653.1  99 KIYSNMSQCHLANQNWKRAVETADKALSLNPKN 131
                 68999**************************97 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00012
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +a+++++++  +lg +e+A++ +e  ++
  CDO70653.1 133 KALFRKAKAQGELGYFEKAEKILEDLIK 160
                 589********************98875 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.1   3.9e+03       2       6 ..      47      51 ..      35      68 .. 0.61
   2 !    9.1   0.0    0.0017       2.1       6      32 ..     104     130 ..     102     131 .. 0.88
   3 !    9.1   0.3    0.0018       2.3       2      29 ..     134     161 ..     133     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.1
                HHHHH CS
       TPR_6  2 Alykl 6 
                A y++
  CDO70653.1 47 ASYHQ 51
                33444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 + +++++ +++ +A+e+ ++ ++  P+
  CDO70653.1 104 MSQCHLANQNWKRAVETADKALSLNPK 130
                 779***955*************99997 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 Al++ a+++ +lg  +kA ++le+lik+
  CDO70653.1 134 ALFRKAKAQGELGYFEKAEKILEDLIKD 161
                 9**********99*************96 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         5   6.4e+03      36      52 ..      33      49 ..      24      57 .. 0.54
   2 !   16.9   0.1     4e-06    0.0051       3      60 ..     106     164 ..     104     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5
       TPR_9 36 GlllaqlGclsaAladL 52
                G   +q G l+ Ala  
  CDO70653.1 33 GDKSFQEGKLKDALASY 49
                55555555555555443 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4e-06
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl.alap 60 
                 ++++ +++w ra ++++  l l+P+    ++  + ++ +lG +++A + Le  + + +p
  CDO70653.1 106 QCHLANQNWKRAVETADKALSLNPKNRKALFRKAKAQGELGYFEKAEKILEDLIkDAEP 164
                 689*******************************************9999998854444 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.67   8.6e+02       9      23 ..      38      52 ..      32      58 .. 0.78
   2 ?   12.3   0.2   0.00016      0.21       8      62 ..     109     161 ..     106     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.67
      TPR_16  9 ragdyddAaaaleaa 23
                + g+  dA+a +++ 
  CDO70653.1 38 QEGKLKDALASYHQS 52
                668888888888765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00016
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalr 62 
                 l+++++ +A++ ++ al ++   P ++ Al+ ++ a  ++g +++A+  l +   +
  CDO70653.1 109 LANQNWKRAVETADKALSLN---PKNRKALFRKAKAQGELGYFEKAEkILEDLIKD 161
                 7899****************...*************99999999999444444434 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.19   2.5e+02      15      31 ..      38      54 ..      35      67 .. 0.81
   2 ?   12.1   0.3   0.00014      0.18       4      70 ..      99     157 ..      96     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.19
      TPR_12 15 rlgrydeAlellekale 31
                + g++ +Al+ ++++l 
  CDO70653.1 38 QEGKLKDALASYHQSLL 54
                67899999999999985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 ++++n+ +++++ +++  A e  +kal +      p++     +l+  + ++ +lg +e+A+++le+
  CDO70653.1  99 KIYSNMSQCHLANQNWKRAVETADKALSLN-----PKN---RKALFRKAKAQGELGYFEKAEKILED 157
                 68999*********************9998.....765...56888888888888888888888886 PP

>> DUF4919  Domain of unknown function (DUF4919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   6.9e-05     0.089      61     113 ..      99     154 ..      84     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.9e-05
     DUF4919  61 l...kldkkelseeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiy 113
                     ++++++l ++++k+++++a +al+ nP + k+l+  a a ++lg  e+a+++
  CDO70653.1  99 KiysNMSQCHLANQNWKRAVETADKALSLNPKNRKALFRKAKAQGELGYFEKAEKI 154
                 223357999***************************************98887765 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.012        15     150     185 ..      30      65 ..      19      70 .. 0.83
   2 ?    8.5   2.2    0.0011       1.4      41     134 ..      99     189 ..      87     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.012
      TPR_21 150 elrGDilvaqgkldeAraaYqaAlaaleekarellq 185
                   +GD  +++gkl++A a Y+++l  l+  +++ lq
  CDO70653.1  30 KEKGDKSFQEGKLKDALASYHQSLLYLHGLDKNTLQ 65 
                 569*******************99888877766665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0011
      TPR_21  41 alYqqlqe.aveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlk 134
                 ++Y+++ + ++++++ ++a e a++  + ++++     a + +Aka+ e g +++A++ Le ++++a + + k++ +  L r+ + +k+ ++A +
  CDO70653.1  99 KIYSNMSQcHLANQNWKRAVETADKALSLNPKN---RKALFRKAKAQGELGYFEKAEKILEDLIKDA-EPAEKDICQKELDRLRAMDKERERAHN 189
                 567777763444555555555555555555555...6777789**********************99.56689************9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1299  (0.0724525); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 1257.62
//
Query:       CDO70654.1  [L=81]
Description: hypothetical protein BN946_scf184756.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 522.68
//
Query:       CDO70655.1  [L=498]
Description: hypothetical protein BN946_scf184756.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3097.61
//
Query:       CDO70656.1  [L=389]
Description: hypothetical protein BN946_scf184756.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   14.3   2.3       0.39   10.8   0.4    2.5  2  COG2      COG (conserved oligomeric Golgi) complex component,


Domain annotation for each model (and alignments):
>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1    0.0078   1.4e+02      17      42 ..     178     204 ..     175     219 .. 0.67
   2 ?   10.8   0.4   2.2e-05      0.39      50     108 ..     241     299 ..     234     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0078
        COG2  17 qFvse.lrhgvpLeslrrdLeaylkll 42 
                 +F++e l+++++L+ +r+ L +  +++
  CDO70656.1 178 KFLKEtLKEAQKLQAMRDKLVEAHNKI 204
                 688888888888888888885544333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 2.2e-05
        COG2  50 vnedyad.FvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeake 108
                 v + +++ Fvs  ++Lv+  ++++ ++  l +  + ve +r kl + ++++e+++++  +
  CDO70656.1 241 VSNGVQEsFVS-DEELVSTTQSVDSLQATLVTQIEWVEGIRVKLRALIAKIEEQVNDSIA 299
                 66777777887.689****************************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2701.24
//
Query:       CDO70657.1  [L=244]
Description: hypothetical protein BN946_scf184756.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00022   20.9   0.0    0.00028   20.6   0.0    1.2  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    0.00059   19.8   0.0    0.00071   19.6   0.0    1.3  1  NMT1            NMT1/THI5 like
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.036   13.5   0.0    1.1  1  NMT1_3          NMT1-like family
       0.11   11.9   0.0       0.18   11.2   0.0    1.3  1  SBP_bac_3       Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.3e-08   0.00028      83     207 ..      32     150 ..       3     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6.3e-08
                     SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HH CS
  Phosphonate-bd  83 asyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpe 177
                     + +  ++i++++s++++++dLkg ti++      sG++  a+ +  ++g +++++ + +  ++ ++ +++v +g   a     ++++  v++   
      CDO70657.1  32 TPLNWAVITGKSSPYNTISDLKGTTIGISRYG--SGSQTMAYVMALQQGWPTSEL-KFQVNNDIRGLIDSVNDGSTSAFMWEWFTTKPFVDA--- 120
                     5667789*********************7655..677777777777999998876.777788899999999998877766666666666665... PP

                     HHTTEEEEEEEE.EEE--EEEEETT.S-HHHH CS
  Phosphonate-bd 178 dkdelrviassp.pipndpvvvrke.lseelk 207
                        e r i s p p p++ +++++e  ++++ 
      CDO70657.1 121 --GECRFIGSVPtPWPSWLIAAHPErAPAAEL 150
                     ..589999999978999999999874555544 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.6e-07   0.00071      65     127 ..      25      89 ..      13     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.6e-07
                 EEEEEE-S--E.EEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHH.HTT--GGG-EEEE- CS
        NMT1  65 svaallqepls.glivlkdsgikspkDLkGkrigyvgspfekallkalla.kdggdpsdvtlvnv 127
                  v++++ +pl+ ++i+ k+s+ ++++DLkG +ig++  + +++++  ++a ++g   s+++++ +
  CDO70657.1  25 LVGSYVTTPLNwAVITGKSSPYNTISDLKGTTIGISRYGSGSQTMAYVMAlQQGWPTSELKFQVN 89 
                 578888888875799999999****************7777776666666155556666666332 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.1e-06     0.036      81     162 ..      22     105 ..      14     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.1e-06
      NMT1_3  81 nlraitmlyaevfqlvvs..kdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqld 162
                  ++ ++++ +++++++v   k+s  ++i+dlkg+++++ + gsG+++ a       g+  ++lk   + +    +d + dg   
  CDO70657.1  22 AYKLVGSYVTTPLNWAVItgKSSPYNTISDLKGTTIGISRYGSGSQTMAYVMALQQGWPTSELKFQVNNDIRGLIDSVNDGSTS 105
                 56678888889999875334*************************987777776777777777765556666666666666655 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.9e-05      0.18      76     157 ..      23     108 ..      12     120 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
                 EEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHH......HHHHHHC.....TSEEEEESSHHHHHHHHHTTSSSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  76 vdFsqpyfsagqvllvrkkdaskissiksladLkgkkvgvqagstaeel......lkeelkk.....gaeivefdtleealqaLkngrvdavv 157
                 + +  +y +++++ +v ++++s  ++i+   dLkg+++g+++  + +++      l+    +     + + ++ ++++ ++  +++g+  a++
  CDO70657.1  23 YKLVGSYVTTPLNWAVITGKSSPYNTIS---DLKGTTIGISRYGSGSQTmayvmaLQ----QgwptsELKFQVNNDIRGLIDSVNDGSTSAFM 108
                 5666789999999999986666666666...*********99877666623333333....14443666666777888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1870.96
//
Query:       CDO70658.1  [L=762]
Description: hypothetical protein BN946_scf184756.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5235.29
//
Query:       CDO70659.1  [L=296]
Description: hypothetical protein BN946_scf184756.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-16   58.0  16.0    1.3e-15   57.6  16.0    1.2  1  Yip1      Yip1 domain
  ------ inclusion threshold ------
       0.98    9.2  12.7        1.4    8.6  12.7    1.2  1  DUF1282   Protein of unknown function (DUF1282)
        6.5    7.1  11.8      0.066   13.6   3.9    1.6  2  DUF4199   Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6  16.0   2.2e-19   1.3e-15      10     170 ..     139     286 ..     130     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 2.2e-19
        Yip1  10 rrlkkepp.........ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkq 99 
                  +l ++++         +lr++dl+++l+++ltl  +l +                    ++++  +g +  +++++++ +l++++ akllgg++sf q
  CDO70659.1 139 TKLVQVLYpprskgdrdLLRDWDLWGPLVLCLTLGILLSLN-------------------APASQSLGVFTSVVVIIAVGSLVVTVQAKLLGGRVSFFQ 218
                 56666666666777777999*********************...................566667777777779999999999999999********* PP

        Yip1 100 tlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaahnlskkkallaalilllll 170
                  l+v+gy+ +Pl ++al++ ++ l++    + v l+a+ W++++ +++l   +++++ + lla+  lll +
  CDO70659.1 219 GLCVLGYCVAPLNVAALVSTFVHLIYVR--APVALAAWGWCVWASVNFLDG-TKIETQRILLAVYPLLLFY 286
                 **********************998885..*******************77.6***********9655554 PP

>> DUF1282  Protein of unknown function (DUF1282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  12.7   0.00024       1.4      65     171 ..     186     290 ..     162     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00024
     DUF1282  65 isvvfylalgvlvlayliklmgrtydsqhsyskifafaayalvplflgglalglsllllvalvslllllyvvvLlylGvptlmnirekdraiviallvl 163
                 ++v ++++  ++v   ++++ ++ +++  s+ + + + +y  +pl  ++l++   +l+ v   ++++l++  + +++ v  l + + + + i++a+ +l
  CDO70659.1 186 LGVFTSVVVIIAVGSLVVTVQAKLLGGRVSFFQGLCVLGYCVAPLNVAALVSTFVHLIYVR--APVALAAWGWCVWASVNFLDGTKIETQRILLAVYPL 282
                 34444444434444444677799999****99*************************9998..9****************99977778999999**999 PP

     DUF1282 164 vvsllila 171
                  + +++la
  CDO70659.1 283 LLFYFVLA 290
                 99999976 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.9   1.1e-05     0.066      14      93 ..     171     246 ..     162     249 .. 0.66
   2 ?   -2.6   1.0         1   6.2e+03      45      52 ..     281     288 ..     250     295 .. 0.42

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
     DUF4199  14 fllilyllglhqilstgpllgllallllllvpflvylalkkyrkknlgGfisfgqa...fgfgflislvagllsavfqyiyfn 93 
                 +l+  +ll+l+      p+ + l+++ +++v++ v  ++     k lgG  sf q+   +g+++++  va+l+s+ +++iy++
  CDO70659.1 171 TLG--ILLSLN-----APASQSLGVFTSVVVIIAVGSLVVTVQAKLLGGRVSFFQGlcvLGYCVAPLNVAALVSTFVHLIYVR 246
                 332..333332.....244444555555555555555666555556799******9444599*******************85 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
     DUF4199  45 pflvylal 52 
                 p+l+++++
  CDO70659.1 281 PLLLFYFV 288
                 22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2047.89
//
Query:       CDO70660.1  [L=450]
Description: hypothetical protein BN946_scf184756.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-41  141.2   0.0    4.2e-41  140.5   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.5e-10   40.0   1.0    4.8e-10   39.1   1.0    1.5  1  AAA_lid_3        AAA+ lid domain
    8.7e-10   38.4   0.0    1.8e-09   37.4   0.0    1.5  1  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    5.4e-06   26.6   0.0    1.4e-05   25.3   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
      3e-05   23.3   0.0    5.7e-05   22.4   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
    4.7e-05   23.7   0.2      0.015   15.5   0.2    2.4  1  AAA_22           AAA domain
    0.00029   21.3   0.2     0.0096   16.3   0.1    2.4  2  AAA_16           AAA ATPase domain
    0.00029   20.8   0.2     0.0017   18.4   0.2    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00058   19.6   0.0     0.0011   18.7   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0068   16.6   0.0      0.013   15.6   0.0    1.5  1  AAA_33           AAA domain
     0.0072   15.7   0.2       0.24   10.7   0.1    2.3  2  ATPase           KaiC
     0.0083   16.0   0.0      0.022   14.6   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
     0.0096   16.5   0.0      0.019   15.5   0.0    1.5  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.011   15.3   0.3      0.054   13.1   0.0    2.3  2  Prot_ATP_OB_N    Proteasomal ATPase OB N-terminal domain
      0.014   15.4   0.1      0.059   13.4   0.0    1.9  2  AAA_14           AAA domain
      0.023   14.9   0.2      0.098   12.9   0.0    2.0  2  AAA_28           AAA domain
      0.026   14.3   0.0      0.051   13.3   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.079   12.9   0.1       0.81    9.6   0.1    2.2  2  NACHT            NACHT domain
      0.086   12.0   0.0       0.15   11.2   0.0    1.3  1  TIP49            TIP49 P-loop domain
      0.098   12.4   0.0       0.16   11.7   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
        0.1   11.9   0.0       0.16   11.1   0.0    1.4  1  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.12   12.8   0.0       0.25   11.7   0.0    1.6  1  RNA_helicase     RNA helicase
       0.13   11.9   0.3       0.35   10.6   0.3    1.7  1  AAA_24           AAA domain
       0.14   11.6   0.0       0.25   10.7   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.17   11.4   0.8        5.3    6.6   0.3    2.5  2  AAA_25           AAA domain
       0.19   11.4   0.4       0.42   10.3   0.4    1.6  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   6.1e-44   4.2e-41       1     132 []     232     365 ..     232     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 6.1e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 v+lyG pGtGKTllakava++++++fl++ gsel++ky+g+++k +relf+ a+e+a psi+fiDEida++++r   +++ ++e +r++ +Ll++ldg+
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRydsTSGGEREIQRTMLELLNQLDGF 329
                 79******************************************************9.****************98656677888899999******** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 +++ ++v vi+atn++++ldpal+r gR+drkie++l
  CDO70660.1 330 DTR-GDVKVIMATNKIESLDPALIRpGRIDRKIEFPL 365
                 **7.66****************************985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   1.0     7e-13   4.8e-10       1      44 [.     387     430 ..     387     431 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 7e-13
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvdl+e + + +  SGAD++a+c eA+llAlr+ +  +t++df 
  CDO70660.1 387 DVDLEEFVTAKDDLSGADIKAVCTEAGLLALRERRMRVTKADFT 430
                 9*****************************************96 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   2.5e-12   1.8e-09       1      56 [.     119     173 ..     119     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 2.5e-12
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkL 56 
                     V+t+ E++dd ++ai+ t s+ e++vs+ + v+++ L pg +V+++ +  ++  +L
      CDO70660.1 119 VGTLEEIIDD-DHAIISTASGPEFYVSIMSFVDKDLLEPGCQVLLHHKNQAVIGVL 173
                     9*********.************************************999888776 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     2e-08   1.4e-05       7     105 ..     233     325 ..     228     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2e-08
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 +l g  g+Gkt+laka+a+  ++    ++ r+  sel++    + l +  +  ++    aee+   iv++DEid i  k+  +    + ++qr +L +l
  CDO70660.1 233 ILYGVPGTGKTLLAKAVANQTSA----TFLRVVGSELIQ----KYLGDGPKLVRELFRVAEEHApsIVFIDEIDAIGTKRYDSTSGGEREIQRTMLELL 323
                 4568889*************996....************....99999999999999999999999************988888888899*******99 PP

                 H- CS
       AAA_2 104 eg 105
                  +
  CDO70660.1 324 NQ 325
                 75 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   8.3e-08   5.7e-05      51     116 ..     227     297 ..     175     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.3e-08
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDDL 116
                 +p + v+L+G  GtGK  l ka+ n+++++ Lr++  e+ ++ l + pklv++l    e++   i+f+D +
  CDO70660.1 227 KPPKGVILYGVPGTGKTLLAKAVANQTSATFLRVVgsELIQKYLGDGPKLVRELFrvaEEHAPSIVFIDEI 297
                 57788******************************888999**********98752226666789999975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   2.2e-05     0.015       8      30 ..     232     254 ..     227     346 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G +GtGKT+l++ +++q  
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTS 254
                 689*****************973 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.4e-05    0.0096      24      51 ..     229     256 ..     199     270 .. 0.82
   2 ?    2.5   0.0      0.24   1.7e+02     122     147 ..     276     300 ..     263     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekd 51 
                 p  v+l+G +G+GK+ l+++++++ +++
  CDO70660.1 229 PKGVILYGVPGTGKTLLAKAVANQTSAT 256
                 589******************9866554 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.24
      AAA_16 122 llkrllallsrderplvlvlDdlqwa 147
                 l+++l++ +++ + p ++++D+++ +
  CDO70660.1 276 LVRELFRVAEE-HAPSIVFIDEIDAI 300
                 67788899999.778********943 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   2.4e-06    0.0017       1     134 [.     231     351 ..     231     353 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +v+L G pGtgK+ la+ +a  + ++++ v +++      l++++   +++ +lv  +l r a+   ++i+++DE++ + ++  +s      e ++ + 
  CDO70660.1 231 GVILYGVPGTGKTLLAKAVANQTSATFLRVVGSE------LIQKYL--GDGPKLV-RELFRVAEehAPSIVFIDEIDAIGTKRYDSTSGGEREIQRTML 320
                 59**************************999986......888888..3333333.3444444445889999999998887777776554333333333 PP

                 -SSSEEE---........-EEEEEESS--.-TT-TTHHH CS
       AAA_5  98 eggelvkaknddller..frviatanpldrslnelspal 134
                 e+ ++ +     +  r  + vi+++n+ +    +l+pal
  CDO70660.1 321 ELLNQLDG----FDTRgdVKVIMATNKIE----SLDPAL 351
                 32222221....22233477777777766....666666 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-06    0.0011      35      96 ..     231     300 ..     205     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.6e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvkl.kitsgPvleka.gd...laalltnleek...dvlfideihrl 96 
                  v+lyG PG Gkt lak +a++  +++ ++  +  ++k  gd   l+  l ++ e+    ++fidei  +
  CDO70660.1 231 GVILYGVPGTGKTLLAKAVANQTSATFlRVVGSELIQKYlGDgpkLVRELFRVAEEhapSIVFIDEIDAI 300
                 699*******************99875266666777774355222444444444432236999**99765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05     0.013       2      35 ..     232     267 ..     232     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrr 35 
                 v+l G+pG+GK+ la+ +++++   + ++   +l++
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTSatFLRVVGSELIQ 267
                 7899***************99995555555555555 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00035      0.24      14      38 ..     224     248 ..     196     261 .. 0.82
   2 ?    2.8   0.0     0.088        61     103     154 ..     272     326 ..     252     330 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
      ATPase  14 gGipegrvvlitGepGtGKtifalq 38 
                  Gi   + v ++G+pGtGKt++a+ 
  CDO70660.1 224 MGIKPPKGVILYGVPGTGKTLLAKA 248
                 6888888899************975 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.088
      ATPase 103 dleelieelaeaikeikakrvviDsitgl...ayeekeavaReilrqlvrvlkkl 154
                 d  +l++el ++ +e   + v iD i+++    y++++   Rei r++++ l++l
  CDO70660.1 272 DGPKLVRELFRVAEEHAPSIVFIDEIDAIgtkRYDSTSGGEREIQRTMLELLNQL 326
                 667899999999**************99963334555556788888887777765 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.2e-05     0.022       2      30 ..     232     260 ..     231     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.2e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 v+l gvPG++ktll+ka+a++ +++f r+
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTSATFLRV 260
                 7899**********************998 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.8e-05     0.019       1      45 [.     232     304 ..     232     359 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe.......a 45 
                 ++l G+pG+GKt lak++++ +                       +++l  va e+ +++ + +e        
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTSAtflrvvgseliqkylgdgpklVRELFRVAEEHAPSIVFIDEidaigtkR 304
                 79****************9987224777777666666677777777777777777777777666666665552 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.9e-05     0.054       2      54 ..     119     172 ..     118     178 .. 0.76
   2 ?   -1.9   0.1         4   2.7e+03      21      27 ..     419     425 ..     415     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.9e-05
  Prot_ATP_OB_N   2 yGtflavnsqdgtadVlv.ggrrmrVavsPlvdaeeLrpGqeVlLnEal.vvVea 54 
                    +Gt+ ++ + d++a +++ +g ++ V++   vd + L+pG +VlL  ++ +v+++
     CDO70660.1 119 VGTLEEIID-DDHAIISTaSGPEFYVSIMSFVDKDLLEPGCQVLLHHKNqAVIGV 172
                    688888885.55555554289************************8755144555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4
  Prot_ATP_OB_N  21 grrmrVa 27 
                     rrmrV+
     CDO70660.1 419 ERRMRVT 425
                    7****97 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.1   2.1e+03      54     100 ..      95     137 ..      67     144 .. 0.60
   2 ?   13.4   0.0   8.5e-05     0.059       5      76 ..     232     300 ..     229     341 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.1
      AAA_14  54 elileklkeekktylflDEiqevpewekalkslvdegknldvivtGS 100
                 e  +e+ k +++     D    +p +  +l +++d++    +i t S
  CDO70660.1  95 ESAREE-K-NEEDRTKVDDLRGSPMAVGTLEEIIDDD--HAIISTAS 137
                 333332.2.3555577888888899999999999988..45666666 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.5e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT l+k ++++       +l +   +  +k l d  kl +++++ ++e+  +++f+DEi  +
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI 300
                 899***************98877...777777666655555555435666666655556899*******877 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.6   1.8e+03     107     139 ..      73     111 ..      61     115 .. 0.66
   2 ?   12.9   0.0   0.00014     0.098       2      36 ..     232     271 ..     231     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.6
      AAA_28 107 krydlvfllppap.....eidddgeRre.dleereaide 139
                 +r++ ++l+++++      +++  +R+e  +e+r+++d+
  CDO70660.1  73 ERIKDYLLMEEEFiqnqeQLKPESAREEkNEEDRTKVDD 111
                 567778888887766664447777776535566777665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00014
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareile 36 
                 +++ G ++tGKT l++a a++      +vv  E   ++l 
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQtsatFLRVVgSELIQKYLG 271
                 7899***************774444555666666666664 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.3e-05     0.051      46      73 ..     228     255 ..     209     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavr 73 
                   ++++l G +G+GK+ la a++ ++ +
  CDO70660.1 228 PPKGVILYGVPGTGKTLLAKAVANQTSA 255
                 56789*****************998765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012      0.81       3      23 ..     232     252 ..     230     259 .. 0.89
   2 ?    0.5   0.0      0.72     5e+02      56     114 ..     264     324 ..     256     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 vil G +G GKT L++ +a +
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQ 252
                 89**************99875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.72
                 HHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH............HHHHHC CS
       NACHT  56 dllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgq...kekqpvrtlLselir 114
                 +l+ + l +  + v+e + v  e++ ++++i D +D + t+       +++++++ + el++
  CDO70660.1 264 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFI-DEIDAIGTKRYDstsGGEREIQRTMLELLN 324
                 5666777777889999999999999999996.999988886666666556666666666665 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.15      51      90 ..     230     267 ..     222     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++v+l G +gtGkt la a++++ +    f  ++gse+ +
  CDO70660.1 230 KGVILYGVPGTGKTLLAKAVANQTS--ATFLRVVGSELIQ 267
                 899******************9977..789999**99865 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.16       3      71 ..     234     297 ..     232     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
  Viral_helicase1   3 vhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                        GvpG GK+ l + ++++     l  ++   el+ + + + p+l  + ++ +++++       i+++DE+
       CDO70660.1 234 LYGVPGTGKTLLAKAVANQTsaTFL-RVVG-SELIQKYLGDGPKLVRELFRVAEEHAP-----SIVFIDEI 297
                      56****************9885444.4444.599999999999999999999999875.....39999997 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.16       4      25 ..     232     253 ..     229     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 v+  Gv+GtGKt+++ +++++ 
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQT 253
                 6789***********9999887 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00037      0.25       1      59 [.     232     281 ..     232     308 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfg 59 
                   ++lyG +g+GK++lak +a++          + ++ r + ++  ++Y g    ++ ++ 
    CDO70660.1 232 VILYGVPGTGKTLLAKAVANQT---------SATFLRVVGSELIQKYLGDGPKLVRELF 281
                   689**************55544.........4555555555555555555555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00051      0.35       5      22 ..     232     249 ..     229     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00051
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +++yG +g+GKT lak  
  CDO70660.1 232 VILYGVPGTGKTLLAKAV 249
                 789************987 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037      0.25      25      43 ..     232     250 ..     226     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   ++l+G pG+GKt+lak+++
    CDO70660.1 232 VILYGVPGTGKTLLAKAVA 250
                   79*************9975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0077       5.3      36      54 ..     232     250 ..     224     265 .. 0.87
   2 ?    2.5   0.0      0.14        96     129     184 ..     276     338 ..     256     341 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0077
      AAA_25  36 allaGapgtGKttlaldla 54 
                 ++l+G pgtGKt la  +a
  CDO70660.1 232 VILYGVPGTGKTLLAKAVA 250
                 69************97666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.14
      AAA_25 129 dvdaleaaieevegvrlvviDplsralgg..densnsd......vgalvealeriarrtgaavl 184
                  v++l +++ee + +  v iD ++++     d++s  +      + +l+++l+ + +r ++ v+
  CDO70660.1 276 LVRELFRVAEE-HAPSIVFIDEIDAIGTKryDSTSGGEreiqrtMLELLNQLDGFDTRGDVKVI 338
                 578999*****.77********999665556777766655555445666666666666666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00061      0.42      21      51 ..     232     262 ..     220     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00061
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrvig 51 
                 ++l G++GtGKt + ka+++   a   rv+g
  CDO70660.1 232 VILYGVPGTGKTLLAKAVANQTSATFLRVVG 262
                 6899**************9998887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 2839.44
//
Query:       CDO70661.1  [L=412]
Description: hypothetical protein BN946_scf184756.g28, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0044   17.2   1.8      0.014   15.6   1.0    2.2  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
     0.0078   16.1   0.3      0.015   15.2   0.3    1.4  1  DP               Transcription factor DP
  ------ inclusion threshold ------
      0.039   14.2   3.9         14    6.0   1.2    3.3  3  DUF5082          Domain of unknown function (DUF5082)
      0.045   13.1   0.1      0.075   12.4   0.1    1.3  1  FAM76            FAM76 protein
      0.071   13.7   1.7       0.53   10.9   0.3    2.3  2  YabA             Initiation control protein YabA
       0.13   12.3   1.6       0.42   10.7   0.1    2.5  2  Med9             RNA polymerase II transcription mediator com
       0.24    9.3   1.4          4    5.2   0.1    2.0  2  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.31   10.9   6.3       0.18   11.6   1.9    2.3  2  SKA2             Spindle and kinetochore-associated protein 2
       0.36   11.3   3.1        0.6   10.5   0.4    2.4  2  FlaC_arch        Flagella accessory protein C (FlaC)
        1.1    9.3   4.8       0.86    9.6   1.0    2.5  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
          6    7.6  10.1         26    5.5   3.0    2.8  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.0   8.4e-06     0.014      21      81 ..     175     237 ..     159     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.4e-06
                      ----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHH CS
  PEP-utilisers_N  21 eeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleevee 81 
                      + + + ed   ++++l++ le v+++l+++++ka   l + + ++++ah ++l+ +++l++v++
       CDO70661.1 175 NCKYTVEDHLVQIAKLDKQLEDVQNRLREMQQKAqklL-DLRGQVVTAHNQMLRRRAMLTAVRS 237
                      556677888899******************99998852.33578*************9999986 PP

>> DP  Transcription factor DP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   9.4e-06     0.015       9      77 ..     196     261 ..     186     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.4e-06
          DP   9 ekekreerikkkkeqlqeLilqqvalknLvqrNreleekkgapsensviqLPFiivnTskktvidcsis 77 
                 + ++r   +++k ++l +L  q+v+  n + r r++ +   a+++ s+++LPF+ +     + +d+ +s
  CDO70661.1 196 DVQNRLREMQQKAQKLLDLRGQVVTAHNQMLRRRAMLT---AVRSASIVTLPFLPILSAVFSAVDMALS 261
                 33455556789999999************999998876...6778889******998888888887665 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.22   3.5e+02      75      99 ..     100     124 ..      93     128 .. 0.89
   2 ?    6.0   1.2    0.0084        14       4      42 ..     186     224 ..     185     235 .. 0.89
   3 ?    4.9   0.1     0.018        30      12      49 ..     280     317 ..     275     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
     DUF5082  75 lessyqtyvdkldelidaieeEIer 99 
                 +  sy+++  +++++i +i  +I++
  CDO70661.1 100 VRASYRHSWGQIRSIIIRIAGDISD 124
                 5679****************99985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0084
     DUF5082   4 kisklqaqiaelrseiaaleekIerLkeaktklsdekes 42 
                 +i+kl +q ++ +++++ +++k ++L   + +++++ ++
  CDO70661.1 186 QIAKLDKQLEDVQNRLREMQQKAQKLLDLRGQVVTAHNQ 224
                 799***********************9999999988776 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
     DUF5082  12 iaelrseiaaleekIerLkeaktklsdekeslkqkkkk 49 
                  +++ s  a+l  +I+r +e + +l+ +++++++++++
  CDO70661.1 280 TESMDSLQATLPRQIRRMEEIRFELQVVQAKIEHQRND 317
                 5666777788899******************9999876 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.6e-05     0.075     210     262 ..     176     231 ..     134     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
       FAM76 210 ldsnssdhlvavtqLkeeiaslk...kqleqkdqellekdkkitelkaellekeke 262
                 ++ ++ dhlv++++L ++++  +   ++++qk q+ll+   ++ +++ ++l+ +++
  CDO70661.1 176 CKYTVEDHLVQIAKLDKQLEDVQnrlREMQQKAQKLLDLRGQVVTAHNQMLRRRAM 231
                 567889*********9877655522277899*******999999999888887765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00033      0.53       7      52 ..     184     230 ..     180     250 .. 0.85
   2 ?    1.4   0.0      0.31     5e+02      18      58 ..     277     317 ..     269     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
        YabA   7 fdkleeleeqleelleeleelkeelaelle.enaeLeleneklrerl 52 
                 + ++++l++qle+++++l+e++++ ++ll+ + + +++ n+ lr+r 
  CDO70661.1 184 LVQIAKLDKQLEDVQNRLREMQQKAQKLLDlRGQVVTAHNQMLRRRA 230
                 56899************************934567789999999986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXX CS
        YabA  18 eelleeleelkeelaelleenaeLeleneklrerleeeekk 58 
                 ++ +e++++l+++l + + + +e+++e + ++ ++e+++++
  CDO70661.1 277 MSATESMDSLQATLPRQIRRMEEIRFELQVVQAKIEHQRND 317
                 56678888899999999999999999999888888665554 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00026      0.42      30      79 ..     151     207 ..     144     208 .. 0.80
   2 ?   -0.8   0.3         1   1.7e+03      50      68 ..     288     306 ..     278     317 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
        Med9  30 elrhkLkkarelirelpg.......idrsveeqeaeieeleeqlakKrelLkkyknr 79 
                 e+   L++a   i  +pg         ++ve+ + +i++l++ql+  ++ L++ +++
  CDO70661.1 151 EITEALDNAMRTIYMIPGffipqpnCKYTVEDHLVQIAKLDKQLEDVQNRLREMQQK 207
                 555566666666667777777777799************************999886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
        Med9  50 rsveeqeaeieeleeqlak 68 
                  +   q +++ee + +l+ 
  CDO70661.1 288 ATLPRQIRRMEEIRFELQV 306
                 5555555555555554443 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0025         4      63     107 ..     179     223 ..     143     241 .. 0.59
   2 ?    3.2   0.1      0.01        16      17      57 ..     282     322 ..     276     376 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0025
  V_ATPase_I  63 leapeekeldeleeelekleeelkelnenleklkkelnelvelka 107
                 + +++  ++ +l+++le+++++l+e++++++kl + + ++v +++
  CDO70661.1 179 TVEDHLVQIAKLDKQLEDVQNRLREMQQKAQKLLDLRGQVVTAHN 223
                 334444556666666666666666666666665554444433322 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.01
  V_ATPase_I  17 dvnafqrkfvkevrrcdemerklrfleeeieklekavikee 57 
                 ++ ++q +  +++rr++e+  +l++++++ie++++ +  ++
  CDO70661.1 282 SMDSLQATLPRQIRRMEEIRFELQVVQAKIEHQRNDPDACQ 322
                 56778888889********************9777666554 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.9   0.00011      0.18      34      91 ..     181     237 ..     175     246 .. 0.82
   2 ?    0.6   0.2      0.29   4.8e+02      65      99 ..     276     310 ..     272     322 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
        SKA2  34 pdnaeNpvkLlerlkkvkeelqaLkeqceellaekkelidkirttlvanrellqqLqa 91 
                 +d+    +kL ++l++v+++l ++++++++ll  + +++++ ++ l + r +l+  + 
  CDO70661.1 181 EDHLVQIAKLDKQLEDVQNRLREMQQKAQKLLDLRGQVVTAHNQML-RRRAMLTAVRS 237
                 555578899***************************9998766555.88888877655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.29
        SKA2  65 laekkelidkirttlvanrellqqLqasaelppls 99 
                 l +  e++d++++tl ++   +++++ ++++ +++
  CDO70661.1 276 LMSATESMDSLQATLPRQIRRMEEIRFELQVVQAK 310
                 55557888888888888888777777666444443 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00037       0.6      10      43 ..     181     214 ..     178     223 .. 0.88
   2 ?    0.1   0.1      0.66   1.1e+03       3      31 ..     284     312 ..     281     317 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00037
   FlaC_arch  10 sklsteletvkkeneelsksveelkenVkdllsL 43 
                 +++ ++++ + k++e++++ + e++++ ++ll+L
  CDO70661.1 181 EDHLVQIAKLDKQLEDVQNRLREMQQKAQKLLDL 214
                 5666899*************************99 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.66
   FlaC_arch   3 delEnklsklsteletvkkeneelsksve 31 
                 d+l+  l++   ++e ++ e++ ++ ++e
  CDO70661.1 284 DSLQATLPRQIRRMEEIRFELQVVQAKIE 312
                 55555555555556666666665555555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.78   1.3e+03      34      87 ..     109     156 ..      80     164 .. 0.45
   2 ?    9.6   1.0   0.00052      0.86      27      75 ..     182     228 ..     177     241 .. 0.83
   3 ?   -1.8   0.0       1.8     3e+03      61      94 ..     279     311 ..     268     316 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.78
  Baculo_PEP_C  34 aqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneL 87 
                   +q+ +++  i++ +++ s+      ae +++ ++l+ +  dal +l+ +++++L
    CDO70661.1 109 GQIRSIIIRIAGDISDASS------AEGARDAEALALARRDALLSLTSEITEAL 156
                   4444444444444444332......12222233333333333333333333333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00052
  Baculo_PEP_C  27 lqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtda 75 
                     +vqi a+l ++l++++++L +++++ ++ll  l+ ++ t+ +++ + 
    CDO70661.1 182 DHLVQI-AKLDKQLEDVQNRLREMQQKAQKLLD-LRGQVVTAHNQMLRR 228
                   567999.***********************775.999999888887655 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
  Baculo_PEP_C  61 ldtrldtlltnLtdalnalqdtlrneLtnlnsil 94 
                    ++ +d+l ++L +++ +++ ++r eL+ +++++
    CDO70661.1 279 ATESMDSLQATLPRQIRRME-EIRFELQVVQAKI 311
                   45556666666666666665.6777777666655 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.0     0.016        26      32      55 ..     186     209 ..     179     217 .. 0.82
   2 ?    5.3   0.6     0.018        30      16      53 ..     280     317 ..     275     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  32 qidrlqrqlrllaerlkeleessg 55 
                 qi++l +ql+ +++rl+e++++++
  CDO70661.1 186 QIAKLDKQLEDVQNRLREMQQKAQ 209
                 788999999999999999988754 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                  + +++L++++ +q +++++++ +l+ ++ ++++ +++
  CDO70661.1 280 TESMDSLQATLPRQIRRMEEIRFELQVVQAKIEHQRND 317
                 567899*************************9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1489  (0.0830498); expected 358.6 (0.02)
Passed bias filter:                     1015  (0.0566122); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.82u 0.42s 00:00:01.24 Elapsed: 00:00:00.61
# Mc/sec: 2034.00
//
Query:       CDO70662.1  [L=1065]
Description: hypothetical protein BN946_scf184756.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.36s 00:00:01.19 Elapsed: 00:00:00.55
# Mc/sec: 5848.58
//
Query:       CDO70663.1  [L=306]
Description: hypothetical protein BN946_scf184756.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2173.44
//
Query:       CDO70664.1  [L=1715]
Description: hypothetical protein BN946_scf184756.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-07   31.6   0.1    3.4e-06   27.5   0.0    2.7  3  PH              PH domain
     0.0011   19.4   0.0     0.0021   18.4   0.0    1.5  1  PH_9            Pleckstrin homology domain
  ------ inclusion threshold ------
       0.03   14.0   1.8      0.078   12.7   1.8    1.6  1  BSP_II          Bone sialoprotein II (BSP-II)
       0.97    9.9   4.1        5.2    7.5   4.1    2.3  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
        3.5    7.4   7.8         13    5.5   7.8    2.0  1  Pox_Ag35        Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   9.6e-10   3.4e-06      16     101 ..     215     325 ..     200     328 .. 0.85
   2 ?    0.6   0.0      0.22   7.8e+02       3      28 ..     362     386 ..     361     430 .. 0.80
   3 ?   -3.0   0.1       2.8     1e+04      91     103 ..     514     526 ..     511     527 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.6e-10
                 C........SEEEEEEEEETTEEEEESST.....TCTTESSEEEEEESTTEEEEEEEC............TT.SSSSTSEEEEEESTSSSTEEEEEEES CS
          PH  16 k........swkkrwfvLkdsellyyknd.....ksekdkepkgsislsncevvevva............te.dpkrkfcfelriverngsrtyllqas 88 
                          +w++ w+ L ++ l++++ +     ++  +  p + i++++++  ++ +            t+  p+++++ +l++++ ++ + yl++++
  CDO70664.1 215 DgqkpakddGWREVWAQLGGTTLSVWDMEeireaSKQGKQVPPTYINVTDASRLRRLKfvkvlgsvalppTPgAPPKRYTNVLTLNTAGS-NLYLFSCP 312
                 334445699************************9999999999**********99999************555**********9998887.******** PP

                 SHHHHHHHHHHHH CS
          PH  89 seeerkeWikaiq 101
                 s+e + +W +a++
  CDO70664.1 313 SAEALVQWTAAFR 325
                 *********9987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.22
                 EEEEEEEETSSSSCSEEEEEEEEETT CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkds 28 
                  eGw+  +  g+   wk+ w+v++ +
  CDO70664.1 362 LEGWVRVRVAGQT-DWKRLWMVVSAG 386
                 5899999999998.9*******9865 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHH CS
          PH  91 eerkeWikaiqsa 103
                 +e+ +Wi ai++a
  CDO70664.1 514 SEMLRWIIAIHDA 526
                 7999******976 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.9e-07    0.0021       4     112 ..     204     322 ..     201     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.9e-07
        PH_9   4 givqrkllleskgkktplkkrgWkevyavlkklvLylykdee..............esesaetedlkslknakllgkirlhhaLaekasdYkkkshvFr 88 
                 g ++r++  +++g+k   k+ gW+ev+a+l ++ L +   ee                ++++++ l+ lk +k+lg+++l  +  ++++ Y+   +v  
  CDO70664.1 204 GPLVRRYERQPDGQKP-AKDDGWREVWAQLGGTTLSVWDMEEireaskqgkqvpptYINVTDASRLRRLKFVKVLGSVALPPTPGAPPKRYT---NVLT 298
                 6678888889998875.9**********************9977776666666444444444444444788888888888888888887776...8*** PP

        PH_9  89 LqtadgaeylfqtsdakevqeWvd 112
                 L+ta    ylf  ++a+ + +W  
  CDO70664.1 299 LNTAGSNLYLFSCPSAEALVQWTA 322
                 **********************76 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   2.2e-05     0.078     102     171 ..    1142    1210 ..    1119    1222 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.2e-05
      BSP_II  102 geektqgkgsiGlaaiklpkkagdieekatkeeesdeeeeeeeeeeneeeeaevdeneqgvngtstnste 171 
                   + ktq+++    aa   p k++  + k  ++    e  eeee ee+ee++++vd +++    t t s  
  CDO70664.1 1142 RKAKTQAQQAAHQAAALRPGKSNGRKGKPRDSSAWGESSEEEE-EEEEEDDDDVDSDNEPAPRTRTTSVS 1210
                  3445555555554555455555444444444444444444444.47788888999988888888877765 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.1    0.0014       5.2      10      58 ..    1165    1204 ..    1158    1216 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
     PBP1_TM   10 GRkGkkakakparkkasrrrrrdddyddeyddeedDdddddeeeevprk 58  
                  GRkGk+++       ++     +++   e ++eedDdd d ++e+ pr 
  CDO70664.1 1165 GRKGKPRD------SSAWGESSEEE---EEEEEEDDDDVDSDNEPAPRT 1204
                  55555542......22222222222...234566677777777777776 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.8    0.0037        13      36     109 ..    1105    1206 ..    1097    1216 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0037
    Pox_Ag35   36 eddifpeDieiP.spkqekkkrattprkkpakkekkkkeeekeeaaeee.........................eledseedeenended...esee 103 
                  + +  pe ie P sp q++ +  + pr   a ++ + +++ k++a+++                          e +++ee+ee+e+d+d   ++e+
  CDO70664.1 1105 RSPSVPEVIETPaSPSQTRPA-LSEPRSSFAPSRLAAERKAKTQAQQAAhqaaalrpgksngrkgkprdssawgESSEEEEEEEEEDDDDvdsDNEP 1200
                  556678889999777766655.555555544444444444444433333444556888888999999999998843333333333333330003344 PP

    Pox_Ag35  104 svqaee 109 
                   +++ +
  CDO70664.1 1201 APRTRT 1206
                  333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1097  (0.0611858); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.32u 0.34s 00:00:01.66 Elapsed: 00:00:00.55
# Mc/sec: 9385.00
//
Query:       CDO70665.1  [L=973]
Description: hypothetical protein BN946_scf184761.g2, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-125  417.1   0.0   6.3e-125  416.7   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.7   0.0  3.5e-129  6.3e-125       3     324 .]     168     488 ..     166     488 .. 0.95

  Alignments for each domain:
  == domain 1  score: 416.7 bits;  conditional E-value: 3.5e-129
     Plavaka   3 nakeLlktiDslpsgdpewkseevkvegel.eeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweqq. 99 
                    ++++t D +p g+++w +++++++g+  ++  p+wm +eye++frdp++v+++++gnpdf+d++dy+P+r y+  ++g+r y+++m+g+w+w q+ 
  CDO70665.1 168 GRVHMYDTFDGIPVGEAPWDHFSISFNGTPpPGPLPSWMIREYEVFFRDPRKVLHNQIGNPDFKDDFDYVPKRMYN--DTGKRKYKDFMSGEWVWAQAd 264
                 5678************************6668999*****************************************..5689****************8 PP

     Plavaka 100 .ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipkl.kkikkskefrklfkrqlfHaclarilepLk 195
                  ++ +p  +ga ++p il+sDKTt+sv+tg++e+yP+Y+s G++++++rr a+rna++l+++L+ipk+ +++k++++frk f+r+lfH++l++i+e+L+
  CDO70665.1 265 eLSLNPrLHGAAFCPAILGSDKTTVSVATGQNEYYPLYMSNGWVTNSTRR-AHRNAITLIGFLAIPKTdRQYKDDPTFRK-FRRELFHTSLRHIFESLR 361
                 766445699*****************************************.*****************9999********.****************** PP

     Plavaka 196 eagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglkgviepFwedl 294
                 +++++  v+ cadg++rrv++++++yiaDypEqvl+ac+vqgwCpkc+a++++l++  ++++r++e t + + +  + +++lw++yg+++  +pF++ +
  CDO70665.1 362 AYMNDYDVVLCADGYYRRVVYGFGPYIADYPEQVLLACTVQGWCPKCMAPPDDLDSG-HHARRSHELTAAYIDTGLS-TRRLWEDYGIVSYLTPFTAYF 458
                 ******************************************************996.5589999999999888876.9******************** PP

     Plavaka 295 pradihelltpDlLHqlikgvfkdHlvkWv 324
                 pradihel++pDlLHq+ikg+fkdHlv+Wv
  CDO70665.1 459 PRADIHELISPDLLHQIIKGTFKDHLVTWV 488
                 *****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6489.18
//
Query:       CDO70666.1  [L=221]
Description: hypothetical protein BN946_scf184761.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.049   13.4   0.1    1.4  1  CCDC92    Coiled-coil domain of unknown function
       0.12   12.4   2.5       0.25   11.3   2.5    1.5  1  FlxA      FlxA-like protein
       0.37   10.6   2.3       0.95    9.3   2.3    1.7  1  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.1e-06     0.049      23      52 ..      21      50 ..      13      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.1e-06
      CCDC92 23 kgLHkEIekLqkenkdLtfklimeegessq 52
                k+LH  Ie Lq en+ L+ +l+  +++s+ 
  CDO70666.1 21 KELHRQIEWLQAENRQLQAELRCYTSSSQG 50
                78******************9988777765 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   4.3e-05      0.25      42      80 ..      11      49 ..       3      53 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
        FlxA 42 ltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekq 80
                + ++ +k +++++  QI+ lqa+ +qlq++ +  ++++q
  CDO70666.1 11 KKQNGQKIKRKELHRQIEWLQAENRQLQAELRCYTSSSQ 49
                3444456899*******************9887777666 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.3   0.00016      0.95      24      48 ..      18      42 ..       6      49 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
                HHHHHHHHHHHHHHHHHHHHHHHHC CS
       DivIC 24 qeiaalqaelaklkaeneeLeaevk 48
                 ++++l ++++ l+aen++L+ae++
  CDO70666.1 18 IKRKELHRQIEWLQAENRQLQAELR 42
                3455666777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1562.19
//
Query:       CDO70667.1  [L=301]
Description: hypothetical protein BN946_scf184761.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2199.21
//
Query:       CDO70668.1  [L=268]
Description: hypothetical protein BN946_scf184761.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-21   77.0   0.0    4.3e-20   72.5   0.0    2.1  1  Abhydrolase_2  Phospholipase/Carboxylesterase
    0.00023   21.8   1.6     0.0075   16.9   0.4    2.1  2  Abhydrolase_6  Alpha/beta hydrolase family
    0.00043   19.8   0.0     0.0016   18.0   0.0    1.8  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.046   13.0   0.0       0.15   11.3   0.0    1.7  2  LIP            Secretory lipase
       0.11   12.1   0.0       0.22   11.0   0.0    1.6  2  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.2e-23   4.3e-20       8     215 ..       9     248 ..       7     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.2e-23
                    --SS---EEEEEE--TT--S.........HHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS...-B-HHHHHHHHHHHH CS
  Abhydrolase_2   8 spkdkaqavviflHGlGdsg.........hawaeaakteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspek...kedeagikksaekle 91 
                     p + ++++v+flHG Gd++            +   +  aa+p + ++fp++p +          p+Wfd+ ++++ +   + +++g  + ++ + 
     CDO70668.1   9 HPTKTHTHTVVFLHGRGDNArnfsaslrySVDSHGRSLIAAFPSFRWVFPQAPLRKCASLPST-WPQWFDVWNVENFAeneELQAEGLREVIPAIR 103
                    68899***************6555433321112223346889***********9766555444.6*****98765444222556668888888888 PP

                    HHHHHHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS......--SEEEEES---TTGGG..............TTTTS-GGGGG-EEEEEEETT CS
  Abhydrolase_2  92 elidaelkkg.ipssriiigGFSqGaalalylaltlpk......klggivafsgalplsqk..............lessatavtkklpilqiHgee 166
                     ++  e +      +r+++ G S+Gaa ++++   l         l+  ++fs+++p +                ++++a+ ++ ++pil+ H+ +
     CDO70668.1 104 SILAREATILhGRWDRVVLAGISMGAATSVHTLFNLDVpaegggGLAAFLGFSCRCPFAGRtlaemravlglkdgVPDHANVLA-NTPILLEHCVD 198
                    888887777755669******************999883333344566899****99654311111222222222688999999.*********** PP

                    -SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS-.-HHHHHHHHHHHHH CS
  Abhydrolase_2 167 DpvvplalgkaakevlkkllkkvelksyeglaHsi.deeemqdikeflkk 215
                    Dp+v +  g  +   l+ +  +v+ k y++++H   ++  m d+ efl++
     CDO70668.1 199 DPLVKIENGRGLRDTLRGFGAQVDWKEYPSGGHWFnSPAGMDDAVEFLNT 248
                    *********************************8526789*******987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   2.1e-06    0.0075       1      81 [.      18     134 ..      18     155 .. 0.56
   2 ?    3.9   0.1     0.019        69     174     211 ..     191     235 ..     148     247 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST...............S-GGCS--H.................HH.CHHHHHHHCCTT.. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG...............rsdpppldl.................ed.ladlaalldelaa. 62 
                    v++lHG g +a+ +  a+L++   ++ + l+  +p++                +++p ++d+                 ++ + +++ +l+++a+ 
     CDO70668.1  18 VVFLHGRGDNARNF-SASLRYSVDSHGRSLIAAFPSFRwvfpqaplrkcaslpSTWPQWFDVwnvenfaeneelqaeglREvIPAIRSILAREATi 112
                    8*******999999.346633333332223333333323444433333433333355554444443333332222211122113334455555558 PP

                    ....TTSEEEEEETCHHHHHHH CS
  Abhydrolase_6  63 ...gggpvvlvGHSlGGalala 81 
                       + ++vvl G S+G+a + +
     CDO70668.1 113 lhgRWDRVVLAGISMGAATSVH 134
                    99999************97776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
                    EEE..CTT-CHHH....HCHHCCCH..STTEEETCE...SSS-HHH CS
  Abhydrolase_6 174 lvl..ggeDplvp....rllerlla..qagarlpvvlpgaGHlphl 211
                    ++l  + +Dplv+    r l++ l+   a +++ +++p +GH+++ 
     CDO70668.1 191 ILLehCVDDPLVKiengRGLRDTLRgfGAQVDW-KEYPSGGHWFNS 235
                    234458899966633333333333344466666.********8764 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.42   1.5e+03      64      78 ..     118     132 ..      87     138 .. 0.79
   2 !   18.0   0.0   4.4e-07    0.0016     138     192 ..     183     237 ..     177     247 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.42
                   GGEEEEEETHHHHHH CS
  Peptidase_S9  64 erlaitGgSyGGylt 78 
                   +r+++ G S G  ++
    CDO70668.1 118 DRVVLAGISMGAATS 132
                   799999999998765 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 4.4e-07
                   GG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSH CS
  Peptidase_S9 138 dnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpr 192
                   +nv a++p+Ll h   D  v ++++  l ++L+  g +v+++ +p  gH++++p 
    CDO70668.1 183 ANVLANTPILLEHCVDDPLVKIENGRGLRDTLRGFGAQVDWKEYPSGGHWFNSPA 237
                   68889**********************************************9986 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.3   1.1e+03      49      85 ..      96     132 ..      90     135 .. 0.68
   2 ?   11.3   0.0   4.2e-05      0.15     212     278 ..     185     250 ..     172     258 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.3
         LIP  49 kavLdsiraalksekvtgiksdakvalwGYSgGslAs 85 
                 + v+ +ir++l  e+        +v+l G S G+  s
  CDO70668.1  96 REVIPAIRSILAREATILHGRWDRVVLAGISMGAATS 132
                 5677888888844443333455799999999998776 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.2e-05
         LIP 212 avPqiPvlvyhgvidelipikdakklaknwcdkgiaslefaedlssgHlaetlvgapaaltWitdRf 278
                 ++ ++P+l+ h v d l+ i++ + l ++  + g a+++++e  s gH  ++++g+  a+ +++ R 
  CDO70668.1 185 VLANTPILLEHCVDDPLVKIENGRGLRDTLRGFG-AQVDWKEYPSGGHWFNSPAGMDDAVEFLNTRV 250
                 56789************************99999.6***************************9996 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7   5.9e+03     141     157 ..      12      28 ..       5      35 .. 0.73
   2 ?   11.0   0.0   6.2e-05      0.22     143     193 ..     187     237 ..     118     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
         DLH 141 akikapilalfgeeDef 157
                 +   +++++l+g  D+ 
  CDO70668.1  12 KTHTHTVVFLHGRGDNA 28 
                 56678999999998886 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.2e-05
         DLH 143 ikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFands 193
                 +++pil  +   D+ ++ ++   l+ +l+  +++++ k Yp  gH F+ + 
  CDO70668.1 187 ANTPILLEHCVDDPLVKIENGRGLRDTLRGFGAQVDWKEYPSGGHWFNSPA 237
                 689********************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1824.54
//
Query:       CDO70669.1  [L=217]
Description: hypothetical protein BN946_scf184761.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1544.05
//
Query:       CDO70670.1  [L=549]
Description: hypothetical protein BN946_scf184761.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   18.9   0.0     0.0021   18.0   0.0    1.4  1  SpoIIE    Stage II sporulation protein E (SpoIIE)
     0.0088   15.7   0.3       0.65    9.6   0.0    2.7  3  PP2C      Protein phosphatase 2C
  ------ inclusion threshold ------
        0.1   12.8   0.5       0.16   12.2   0.5    1.2  1  MSG       Major surface glycoprotein
        3.4    8.1   4.4        6.4    7.2   0.1    2.3  2  CCDC53    Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.8e-07    0.0021      76     138 ..     419     489 ..     414     505 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.8e-07
                 EEEEEESSSSEEEEETTS...TEEEEE--SS--..TTTSSS...T-EEEEEEE--TTEEEEEESCCCCSSS CS
      SpoIIE  76 leyanaGhpppllvrpdg...gtklllastglp..lGilpe...adyetaelelepgdtlllyTDGvtEar 138
                 +++a +G+   +lvr+d    +t++   +++ p  lG  +    ad+++ ++++e++d+l+l++DG+ ++ 
  CDO70670.1 419 IRIAHLGDCMGMLVRGDAivwRTEEMWWTFNTPvqLGPASStkpADARVFTVPVEADDILILASDGLSDNL 489
                 57788899999999998899988888889999977777666888************************997 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.39   1.7e+03      41      90 ..     265     317 ..     245     329 .. 0.58
   2 ?    2.9   0.0     0.016        71     114     131 ..     419     436 ..     411     444 .. 0.85
   3 !    9.6   0.0   0.00014      0.65     203     233 ..     473     503 ..     461     516 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.39
                 EEESSSHHHHHHHHHHHHHHHHHHHCHTTH...HHHHHHHHHHHHHHHHHHHH CS
        PP2C  41 dghggseaakyarehleeilksqksfeele...kleqalrksfladtdeelks 90 
                 +++    +  y + + + ++++ +s eele   ++  +l k++ + ++++++s
  CDO70670.1 265 QEQSCNGLDAYSDAEEDIFAELEDSLEELEeglDVLMILEKAYEKTLRSHVRS 317
                 44444444555555555566666666666666677777777777755555555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.016
                 EEEEEESS-EEEEEETTE CS
        PP2C 114 lyvAnvGDSravLcrkgn 131
                 + +A++GD++ +L+r + 
  CDO70670.1 419 IRIAHLGDCMGMLVRGDA 436
                 669***********9986 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00014
                 TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHH CS
        PP2C 203 eedefliLacdGlwdvlsdqeavdlvrdele 233
                 e d+ liLa+dGl d l d e+ d v + ++
  CDO70670.1 473 EADDILILASDGLSDNLWDAEILDEVVRFRK 503
                 4599*****************9998877776 PP

>> MSG  Major surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.5e-05      0.16      16      61 ..     249     295 ..     247     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
         MSG  16 fleesckntkkk.CdklkekCkkkgeektleklllsklkgsldkeek 61 
                  l+  c+++ +  C++ ++ C++++ +   e+ ++ +l++sl++ e+
  CDO70670.1 249 RLMHFCSEEVEAaCEQQEQSCNGLDAYSDAEEDIFAELEDSLEELEE 295
                 6899******99******************************99886 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.8     0.062   2.8e+02      67     100 ..      50      83 ..      17     112 .. 0.51
   2 ?    7.2   0.1    0.0014       6.4      10      97 ..     270     357 ..     266     374 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.062
      CCDC53  67 aarkgppppppsseaaaaaaqaeeasqaeesaee 100
                 + + +pppppp+++++++  ++++ +++++ + e
  CDO70670.1  50 DRSLPPPPPPPTHSRNSNVITPATRPSPQTARGE 83 
                 3333344444444433333333333333333322 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0014
      CCDC53  10 qfLNrFatecEekLvevekrlqrleitlalLEakLsSipgleeveaeaaeastsddnaarkgppppppsseaaaaaaqaeeasqaees 97 
                 + L+ +++  E+ ++e+e++l++le  l +L    ++ ++    +++ ae+s+ ++ + +++p+ + p   aa+ a  ++++s+++++
  CDO70670.1 270 NGLDAYSDAEEDIFAELEDSLEELEEGLDVLMILEKAYEKTLRSHVRSAEESAPSSRSRSPSPTDTHPELVAASHARMTPSPSEPSQT 357
                 5688999999999************999888765556665555555544444444444444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3686.32
//
Query:       CDO70671.1  [L=614]
Description: hypothetical protein BN946_scf184761.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-25   90.2   0.0    2.3e-25   89.2   0.0    1.5  1  DUF4451   Domain of unknown function (DUF4451)


Domain annotation for each model (and alignments):
>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.3e-29   2.3e-25       3     122 .]     442     581 ..     440     581 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.3e-29
     DUF4451   3 endlYeprvvrgekdknekkeglCpiCeeev....ekkekflklknssye.khlsfeHGvl.................sngslvpePillrskkrrkak 79 
                 + dlY+pr+v+g    +++k+glCpiC+e+v    e+k+ +l +k s+++ +h++++HG                   + g+++++P+ +r   r +a 
  CDO70671.1 442 ALDLYTPRFVKG---RGTSKVGLCPICHESVdrggEGKKLWLSMKFSAFKcYHMQYAHGKWstiavirviltivgispASGLPFSPPLGFRIVPRPNAG 537
                 579*********...99***********999*99999*********************755555566777777777799******************** PP

     DUF4451  80 ekekegiv...CpkCneiievslsknkkekkvnellayfrHfkkch 122
                 + ek++i+   C+ C+++++++  k+  +k v+e++ +++H++ ch
  CDO70671.1 538 KLEKTQIMegkCHRCKKWVSIEGIKDVPTK-VKEIF-WWKHAAACH 581
                 *****************************9.89***.********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4679.45
//
Query:       CDO70672.1  [L=974]
Description: hypothetical protein BN946_scf184761.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-54  184.0   0.0    1.1e-43  148.9   0.0    2.5  2  AAA              ATPase family associated with various cellul
    3.5e-24   85.0   0.9    8.7e-24   83.7   0.9    1.7  1  PEX-1N           Peroxisome biogenesis factor 1, N-terminal
      3e-16   59.0   0.4      4e-10   39.3   0.0    2.6  2  AAA_lid_3        AAA+ lid domain
    2.1e-10   41.2   2.5     0.0058   17.0   0.1    4.2  3  AAA_16           AAA ATPase domain
    1.2e-06   28.8   2.8       0.23   11.7   0.1    4.9  3  AAA_22           AAA domain
    5.1e-06   26.5   0.0    0.00088   19.2   0.0    2.6  3  Bac_DnaA         Bacterial dnaA  protein
    7.4e-06   26.0   0.0      0.088   12.8   0.0    2.4  2  AAA_14           AAA domain
      3e-05   23.8   0.0     0.0047   16.7   0.0    2.9  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.3e-05   23.5   0.1       0.19   11.7   0.0    3.7  3  NACHT            NACHT domain
    6.6e-05   22.3   0.0        0.1   11.8   0.0    2.3  2  TIP49            TIP49 P-loop domain
    0.00013   21.7   0.0       0.57    9.9   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    0.00016   21.7   0.1       0.59   10.1   0.0    3.1  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00024   21.7   0.0       0.17   12.5   0.0    2.5  2  AAA_18           AAA domain
    0.00033   20.0   0.0       0.73    9.1   0.0    2.4  2  Zeta_toxin       Zeta toxin
    0.00047   20.7   0.0       0.12   12.9   0.0    2.7  2  ABC_tran         ABC transporter
    0.00061   19.8   0.0       0.65   10.0   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00062   19.7   0.0       0.12   12.3   0.0    2.4  2  Rad17            Rad17 P-loop domain
     0.0007   19.3   0.0      0.011   15.5   0.0    2.3  2  AAA_29           P-loop containing region of AAA domain
    0.00077   19.6   0.0      0.024   14.8   0.0    2.5  2  AAA_33           AAA domain
    0.00088   19.4   0.0      0.038   14.1   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
     0.0015   18.9   0.0       0.96    9.9   0.0    2.5  2  RNA_helicase     RNA helicase
     0.0049   16.5   2.3          1    8.9   0.1    3.6  4  AAA_25           AAA domain
     0.0057   15.9   0.0        1.8    7.7   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.011   15.2   0.2       0.65    9.3   0.0    2.8  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.013   15.3   0.0       0.31   10.8   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.018   14.7   1.5       0.18   11.5   0.1    2.8  2  AAA_30           AAA domain
       0.02   14.4   0.0        2.7    7.5   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
      0.022   14.6   0.0       0.73    9.7   0.0    2.5  2  AAA_3            ATPase family associated with various cellul
      0.025   14.3   0.1        9.3    5.9   0.0    2.5  2  AAA_24           AAA domain
      0.043   13.7   0.1          1    9.3   0.0    2.4  2  NTPase_1         NTPase
      0.053   13.7   1.5        1.1    9.5   0.1    2.9  3  HD               HD domain
      0.054   13.9   0.1       0.28   11.6   0.0    2.1  2  AAA_17           AAA domain
      0.094   11.9   0.0        3.2    6.9   0.0    2.4  2  NB-ARC           NB-ARC domain
       0.13   12.1   0.1        3.2    7.6   0.0    2.9  3  APS_kinase       Adenylylsulphate kinase
       0.25   10.6   0.5          8    5.7   0.0    2.8  3  ATPase           KaiC


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.6e-10   8.4e-08       1     125 [.     439     574 ..     439     580 .. 0.77
   2 !  148.9   0.0   2.1e-46   1.1e-43       1     128 [.     725     851 ..     725     855 .. 0.97

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.6e-10
                 EEEESSTTSSHHHHHHHHHHHHT......HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg......vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlte 92 
                 +l++G  G GKT++ +av k ++      ++ l +++s++  + + +  ++++  +++a  + kps l++D+id+l++++ ++++s +++ + +++l  
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQddprtlTYTLYVDLSRFSASPITKVRSHMKYWMEKAIWH-KPSLLVLDNIDKLMGTElEHADSFHTRHITEVFLGI 536
                 6899*****************96555555556777777777556666666666666666655.5****************7777777777777888877 PP

                 HHHTTTS....SSTEEEEEEESSGGGSTHHHHS.TTSS CS
         AAA  93 ldgvkkk....eskvivigatnrpdkldpallr.gRfd 125
                      ++     s v++i+a+ +   l p l + + f+
  CDO70672.1 537 YGSSARSaapnASGVVIIAAAESQAALHPLLNSsHIFK 574
                 77666668998777999999999999999988655555 PP

  == domain 2  score: 148.9 bits;  conditional E-value: 2.1e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +llyG pG+GKTlla+avake+g +f++i+g+ell+ky+g+sek++r+lf++a++ + p++lf+DE+d++a++r ++++++++rvvnq+lt++dg +  
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECGLNFISIKGPELLNKYIGASEKSVRDLFERASAAK-PCVLFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGL 822
                 69***************************************************9887.****************999*********************8 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEE CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrki 128
                 e+ v v++at rpd +d+allr gR+d+ +
  CDO70672.1 823 EG-VYVLAATSRPDLIDSALLRpGRLDKSL 851
                 77.************************976 PP

>> PEX-1N  Peroxisome biogenesis factor 1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.9   1.7e-26   8.7e-24       2      77 .]     120     195 ..     119     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.7e-26
      PEX-1N   2 tVevePltsdDwEiielhaefleenlLsQvravspgqvltvwlspttvakfkvtslepatskfvkLspdteviVaP 77 
                 +V  eP+t+dDwEi+elha+++e++lLsQvr++  gq++ vw+ ++t ++++v+slep t k+  L+++tev +aP
  CDO70672.1 120 SVATEPVTADDWEILELHASHVESTLLSQVRVAVVGQEIDVWVLGRTRVRLNVVSLEPPTGKALLLTTSTEVSIAP 195
                 7999***********************************************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   7.4e-06    0.0038       3      36 ..     613     646 ..     612     665 .. 0.74
   2 !   39.3   0.0   7.7e-13     4e-10       1      35 [.     877     911 ..     877     919 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.4e-06
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 ++ +LA +TeGyS  Dl+ l+ +A+++A  r+ +
  CDO70672.1 613 NYTALATQTEGYSVTDLKDLVARAVHRAAIRTSQ 646
                 6678***********************9877533 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 7.7e-13
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgi 35 
                 +vdl+eLAe+TeG+SGADl+al ++A l+ + ++i
  CDO70672.1 877 SVDLAELAEETEGFSGADLQALMYNAHLEVVHDTI 911
                 69************************998887766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-05    0.0058      14      52 ..     427     466 ..     421     487 .. 0.73
   2 !   16.0   0.1   2.3e-05     0.012      22      51 ..     716     749 ..     708     766 .. 0.76
   3 ?    4.7   0.0     0.069        35     124     147 ..     771     793 ..     759     815 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-05
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekd..g 52 
                 +a+++  +g  + +l++G sG GK++++ ++ +a+++d   
  CDO70672.1 427 HAFSTRVRGV-PGLLVTGRSGAGKTAMLHAVSKAMQDDprT 466
                 5566555554.799******************999988431 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.3e-05
      AAA_16  22 grp....elvllsGesGvGKsslvrellralekd 51 
                 ++p    + +ll+G++G+GK+ l+ +++++   +
  CDO70672.1 716 QSPlrlrSGLLLYGYPGCGKTLLASAVAKECGLN 749
                 5555556889*****************9876655 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.069
      AAA_16 124 krllallsrderplvlvlDdlqwa 147
                 ++l++++s  ++p vl++D+++ +
  CDO70672.1 771 RDLFERASA-AKPCVLFFDEFDSI 793
                 567788899.99*********965 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00045      0.23       8     112 ..     439     521 ..     437     539 .. 0.68
   2 ?   -1.5   0.0       5.6   2.9e+03      41      87 ..     575     638 ..     560     658 .. 0.66
   3 !   10.0   0.1    0.0015      0.78       7      58 ..     724     775 ..     720     817 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00045
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrse 106
                 l+vtG sG+GKT  l  + +  +        +p+++++tl +         +l r+  ++  +    ++++   +e+a+ ++    ll++D++++l   
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQD-------DPRTLTYTLYV---------DLSRFSASPITK---VRSHMKYWMEKAIWHKPS--LLVLDNIDKL-MG 515
                 689**************9998753.......88888776544.........444444444444...666777777777777766..7777777777.45 PP

      AAA_22 107 ealeeL 112
                 + le+ 
  CDO70672.1 516 TELEHA 521
                 555554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.6
      AAA_22  41 evvfvtlpsstsskdllrellralglelka.................erlsseellealeqalr 87 
                 evv+ ++ps+  +k++l +++++  ++ +                  e+ s  +l +++++a++
  CDO70672.1 575 EVVHLKPPSKDARKEILAHIVKQHMDRSDIvqdpasplnytalatqtEGYSVTDLKDLVARAVH 638
                 5677777777777888777777666444435555555555555555545555555555555555 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0015
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdllr 58 
                  l+++G +G+GKT+l+  ++++    +++  ++pe++ ++  +s++s +dl++
  CDO70672.1 724 GLLLYGYPGCGKTLLASAVAKEC-GLNFISIKGPELLnKYIGASEKSVRDLFE 775
                 5899*************999985.33444446777666666666666777665 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.7e-06   0.00088      37     122 ..     439     526 ..     421     533 .. 0.86
   2 ?   -2.7   0.0       8.5   4.4e+03     160     182 ..     576     598 ..     561     616 .. 0.78
   3 ?    4.1   0.0     0.072        37      35      59 ..     723     747 ..     712     802 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.7e-06
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-.EEEEEHHHHHHHHHHHHHTT-HHHHHHHHT.T-SEEEEE-GGGGTT-HHHHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelr.vvYltaeeFlnelvkalrdkkaeefkeklr.kvDvLliDDiqflagkektqeelfht 122
                 l++ g +G Gkt +l+a++++++++ + l   +Y+   +F ++ ++ +r++ +  + + +  k  +L++D+i  l g e    + fht
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQDDPRTLTyTLYVDLSRFSASPITKVRSHMKYWMEKAIWhKPSLLVLDNIDKLMGTELEHADSFHT 526
                 7899***************99999888765278*****************9888887776537889999*******999888888887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.5
                 EEE-----HHHHHHHHHHHHHHT CS
    Bac_DnaA 160 vvdieppdletrlailkkkieae 182
                 vv+++pp ++ r +il + ++++
  CDO70672.1 576 VVHLKPPSKDARKEILAHIVKQH 598
                 57889999999999998877755 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.072
                 --EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA  35 nPlfiygevGlGktHLlkaignevl 59 
                   l++yg  G Gkt L  a+++e  
  CDO70672.1 723 SGLLLYGYPGCGKTLLASAVAKECG 747
                 6699***************998765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00017     0.088       5     102 ..     439     541 ..     437     552 .. 0.74
   2 !   10.6   0.0   0.00083      0.43       5      75 ..     725     792 ..     722     815 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00017
      AAA_14   5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqevpeweka.lkslvdeg.knldviv 97 
                 l++tG   +GKT +l+ + k       +   +ly++l + + + +++ ++ +++++ek +  +k ++l+lD i ++ + e     s++ ++ +++ + +
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQddpRTLTYTLYVDLSRFSASPITKVRSHMKYWMEKaIW-HKPSLLVLDNIDKLMGTELEhADSFHTRHiTEVFLGI 536
                 6899999********9998877776655667788888888887777777899*****9544.599*********9977765403344444455566666 PP

      AAA_14  98 tGSns 102
                  GS++
  CDO70672.1 537 YGSSA 541
                 66666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00083
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                 l++ G   +GKT l+  ++ke      +++ i+  +  +k +  +ek  + ++e++++ k  +lf+DE   
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECG---LNFISIKGPELLNKYIGASEKSVRDLFERASAAKPCVLFFDEFDS 792
                 57889999***********9988...7788887777777666666666666666655668999*****876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11        55      28      60 ..     431     463 ..     420     480 .. 0.84
   2 !   16.7   0.0   9.2e-06    0.0047      36      70 ..     725     759 ..     717     796 .. 0.86
   3 ?   -2.6   0.0       8.1   4.2e+03      16      50 ..     819     853 ..     807     883 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
      RuvB_N  28 kreealdhvllyGpPGlGkttlakiiakelgvk 60 
                 +r + +  +l++G  G Gkt++ + ++k ++ +
  CDO70672.1 431 TRVRGVPGLLVTGRSGAGKTAMLHAVSKAMQDD 463
                 5666677789******************99876 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9.2e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvle 70 
                 +llyG PG Gkt la+ +ake g ++ +  gP l 
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECGLNFISIKGPELL 759
                 79*************************99999864 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.1
      RuvB_N  16 keklk.ifieaakkreealdhvllyGpPGlGkttla 50 
                  e l+ +++ aa +r + +d  ll  p  l k+ l+
  CDO70672.1 819 AEGLEgVYVLAATSRPDLIDSALLR-PGRLDKSLLC 853
                 5555437888999999999988875.4446665555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00036      0.19       3      63 ..     439     491 ..     438     597 .. 0.66
   2 ?    6.8   0.1     0.012         6       3      23 ..     725     745 ..     723     748 .. 0.88
   3 ?   -1.1   0.0       3.1   1.6e+03      65     107 ..     766     807 ..     757     835 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlp 63 
                 ++++G++G GKT++l+ +  a++++        + +++ l+++s s     +++ ++s+++
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQDDPRT---LTYTLYVDLSRFSAS-----PITKVRSHMK 491
                 5899*************99888776533...489999999999985.....4444444444 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++l G +G+GKT L+  +a +
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKE 745
                 5899***********999875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.1
                 --SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH........ CS
       NACHT  65 paapvsevwavllelperlLlilDglDelvtdlgqkekqpvrt 107
                 +++ v+    ++++ ++  +l +D +D ++ + g++    +++
  CDO70672.1 766 SEKSVRD-LFERASAAKPCVLFFDEFDSIAPKRGHDSTGVTDR 807
                 5555555.55577888899999******999988844444444 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0029       1.5      52      77 ..     438     463 ..     429     479 .. 0.89
   2 !   11.8   0.0    0.0002       0.1      52      97 ..     724     767 ..     720     778 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0029
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelged 77 
                 ++L++G sg+Gkta+  a+sk++ +d
  CDO70672.1 438 GLLVTGRSGAGKTAMLHAVSKAMQDD 463
                 69*******************99754 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 ++Ll G +g Gkt la a++ke g  + f++++g e+    +  +e
  CDO70672.1 724 GLLLYGYPGCGKTLLASAVAKECG--LNFISIKGPELLNKYIGASE 767
                 69*********************9..89******999877666555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0011      0.57      49     119 ..     438     512 ..     425     531 .. 0.80
   2 !    8.8   0.0    0.0024       1.3      46      70 ..     721     745 ..     709     769 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLve....elkrarrdgklaralkrllkvdllilDdlgl 119
                 +++++G sG+GK+ +  a++++   +    +++   dL +     + + r++ k+  + +   k++ll+lD++  
  CDO70672.1 438 GLLVTGRSGAGKTAMLHAVSKAMQDDPRTLTYTLYVDLSRfsasPITKVRSHMKYWMEKAIWHKPSLLVLDNIDK 512
                 6899***************9988888888888888888642222577788888888888889999*****99865 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0024
   IstB_IS21  46 kkenivllGpsGvGKshlaialgve 70 
                  + +++l G +G GK+ la a+++e
  CDO70672.1 721 LRSGLLLYGYPGCGKTLLASAVAKE 745
                 567899***************9986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0047       2.4       2      33 ..     439     472 ..     438     559 .. 0.78
   2 !   10.1   0.0    0.0012      0.59       2      27 ..     725     750 ..     724     797 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0047
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqlt 33 
                 +l+ G +G gK+ +   +++a+    +++++ l+
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMqdDPRTLTYTLY 472
                 8999******************763334444444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
                 EEEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnrev 27 
                 +lL G pG+gK+ la  +a+  + ++
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECGLNF 750
                 89**************9998766555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.021        11       2      42 ..     440     478 ..     439     523 .. 0.61
   2 !   12.5   0.0   0.00033      0.17       2      31 ..     726     753 ..     725     782 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.021
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevd 42 
                 l+tG +G+GKt + +++sk +   +  r + +  +  l+++
  CDO70672.1 440 LVTGRSGAGKTAMLHAVSKAM--QDDPRTLTYTLYVDLSRF 478
                 69****************996..444444444433333333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00033
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdv 31 
                 ll G+pG+GKt la +++k++  g n +++
  CDO70672.1 726 LLYGYPGCGKTLLASAVAKEC--GLNFISI 753
                 689*****************9..6666554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0014      0.73      20      42 ..     440     462 ..     433     476 .. 0.87
   2 !    8.1   0.0    0.0028       1.4      20      51 ..     726     755 ..     723     772 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0014
  Zeta_toxin  20 llgGqpGAGKselaellkdeler 42 
                 l+ G +GAGK+++++++ ++++ 
  CDO70672.1 440 LVTGRSGAGKTAMLHAVSKAMQD 462
                 899*****************963 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldp 51 
                 ll G pG+GK+ la+++++e   + n++ +++
  CDO70672.1 726 LLYGYPGCGKTLLASAVAKEC--GLNFISIKG 755
                 78899***************9..899999876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00023      0.12      16      80 ..     441     529 ..     431     612 .. 0.77
   2 ?    4.6   0.0     0.084        43      14      35 ..     725     746 ..     719     817 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00023
                 EEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG...B-HHHCCHCEEEE-SS.--S-TTSBHHHH...................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx...xxxxxxxxxxxxxxxx.xxxxxxxxxxxx...................x RF
    ABC_tran  16 ivGenGaGKStLlkllagllkpteGeilld.gkdlke...qeleslrkeigvlpqe.pqlfpeltvren...................e 80 
                 ++G++GaGK+ +l ++++ ++++  ++++    dl++    +++++r+++++  ++   ++p l v +n                    
  CDO70672.1 441 VTGRSGAGKTAMLHAVSKAMQDDPRTLTYTlYVDLSRfsaSPITKVRSHMKYWMEKaIWHKPSLLVLDNidklmgtelehadsfhtrhI 529
                 78********************9999988877888878889999999999999999778888888888877777766665555555440 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.084
                 EEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagll 35 
                 + + G  G+GK+ L++++a++ 
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKEC 746
                 5689************999875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0      0.01       5.2      21      54 ..     436     470 ..     411     478 .. 0.73
   2 !   10.0   0.0    0.0013      0.65      19      59 ..     722     762 ..     698     775 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.01
                 E..EEEEESTTSSHHHHHHHHHHHTT------TTTT CS
        TsaE  21 v..ilLeGdLGaGKTtlvrglakalgveevkSPTFt 54 
                 v  +l +G  GaGKT++ +++ ka++  + +  T+t
  CDO70672.1 436 VpgLLVTGRSGAGKTAMLHAVSKAMQD-DPRTLTYT 470
                 2558999***************99964.44445555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0013
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59 
                 ++ +lL+G  G+GKT l+ ++ak++g++  ++k P   l+++Y
  CDO70672.1 722 RSGLLLYGYPGCGKTLLASAVAKECGLNfiSIKGP--ELLNKY 762
                 44599*********************998888888..466666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.045        23      48      69 ..     439     460 ..     425     470 .. 0.90
   2 !   12.3   0.0   0.00024      0.12      48     113 ..     725     791 ..     714     805 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.045
       Rad17  48 LLisGPsGCgkstvvkvLskel 69 
                 LL++G sG gk+ +++ +sk +
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAM 460
                 9******************976 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00024
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn.qksdfkgltekesrflsqiesfkele 113
                 LL+ G +GCgk+     ++ke g +++    p +l++     ++ ++ l+e  s   + +  f e+ 
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECGLNFISIKGPELLNKYIGaSEKSVRDLFERASAAKPCVLFFDEFD 791
                 999**************************99999866543489999999999999999999999995 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.1e-05     0.011      12      46 ..     424     460 ..     422     467 .. 0.84
   2 ?    0.9   0.0      0.76   3.9e+02      21      39 ..     721     739 ..     712     744 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.1e-05
      AAA_29  12 fdghtieidlkg..atlltGpsGsGKSTllDAiqalL 46 
                 + +h ++ +++g    l+tG+sG+GK+++l A++  +
  CDO70672.1 424 YANHAFSTRVRGvpGLLVTGRSGAGKTAMLHAVSKAM 460
                 5567888888888889***************998766 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.76
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 l++  ll G  G GK+ l 
  CDO70672.1 721 LRSGLLLYGYPGCGKTLLA 739
                 33449**********8665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.4     2e+02       3      22 ..     440     459 ..     439     499 .. 0.82
   2 !   14.8   0.0   4.8e-05     0.024       3      52 ..     726     777 ..     725     887 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.4
      AAA_33   3 llvGlpGsGKstlaerllkk 22 
                 l+ G +G+GK+  ++ + k+
  CDO70672.1 440 LVTGRSGAGKTAMLHAVSKA 459
                 6789*******999988765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.8e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvl 52 
                 ll G pG+GK+ la  ++k+ g  ++ +  ++l++++ g  ++s +d+ + +
  CDO70672.1 726 LLYGYPGCGKTLLASAVAKECGlnFISIKGPELLNKYIGASEKSVRDLFERA 777
                 688*******************999999999999999987777766444433 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.29   1.5e+02       7      37 ..     440     469 ..     436     523 .. 0.76
   2 !   14.1   0.0   7.4e-05     0.038       6     103 ..     725     816 ..     721     820 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.29
                 EEE--TTSSHHHHHHHHHHHTT-....-EEE CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekklir 37 
                 l++g +g Gkt +  a+++ ++ ++ ++l+ 
  CDO70672.1 440 LVTGRSGAGKTAMLHAVSKAMQ-DDPRTLTY 469
                 7899****************99.88887764 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.4e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVqrdLLq 101
                 +ll g  g+Gkt+la a+a+   +    ++i +   ell     ++e++v  l   +    +a++  ++++DE d i+pk ++ +  v    V ++L q
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECGL----NFISIKGPELLNkyIGASEKSVRDLFERA----SAAKPCVLFFDEFDSIAPKrGHDSTGVTDRVVNQMLTQ 815
                 57788899**************98....99999999999922233333333333333....234445************98777788877766666655 PP

                 HH CS
       AAA_2 102 il 103
                  +
  CDO70672.1 816 -M 816
                 .4 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.021        11       2      26 ..     440     464 ..     439     496 .. 0.82
   2 !    9.9   0.0    0.0019      0.96       2      25 ..     726     749 ..     725     815 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.021
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +++G+sg GK+ + + ++ka++++ 
    CDO70672.1 440 LVTGRSGAGKTAMLHAVSKAMQDDP 464
                   789*************888887544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0019
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   +lyG +g+GK++la  +ak+   +
    CDO70672.1 726 LLYGYPGCGKTLLASAVAKECGLN 749
                   79**************99987644 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.44   2.3e+02      37      53 ..     440     456 ..     431     464 .. 0.82
   2 ?    3.0   0.0      0.13        66      91     162 ..     454     521 ..     451     532 .. 0.60
   3 !    8.9   0.1     0.002         1      36      54 ..     725     743 ..     718     780 .. 0.84
   4 ?   -0.9   0.0         2     1e+03     129     172 ..     769     812 ..     763     820 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.44
      AAA_25  37 llaGapgtGKttlaldl 53 
                 l++G++g+GKt+++  +
  CDO70672.1 440 LVTGRSGAGKTAMLHAV 456
                 689********998665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
      AAA_25  91 ravgeal.rddarllvldlagveslpLfakdrggtl.ltadvdaleaaieev..egvrlvviDplsralggdensn 162
                 +av +a+ +d+++l+ + +++        + r ++  +t +  ++  ++e++  +++ l+v+D++++++g + + +
  CDO70672.1 454 HAVSKAMqDDPRTLTYTLYVD--------LSRFSASpITKVRSHMKYWMEKAiwHKPSLLVLDNIDKLMGTELEHA 521
                 555555534444444443322........223333346777777777777755567*************9855444 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.002
      AAA_25  36 allaGapgtGKttlaldla 54 
                  ll+G pg+GKt la+ +a
  CDO70672.1 725 LLLYGYPGCGKTLLASAVA 743
                 69*************9887 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2
      AAA_25 129 dvdaleaaieevegvrlvviDplsralggdensnsdv.galveal 172
                  v++l +++ + +++ ++ +D ++++ +   ++++ v +++v+++
  CDO70672.1 769 SVRDLFERASA-AKPCVLFFDEFDSIAPKRGHDSTGVtDRVVNQM 812
                 56778888888.6799*************9999999889999886 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0036       1.8       4      33 ..     439     468 ..     438     493 .. 0.83
   2 ?    6.0   0.0     0.012         6       5      25 ..     726     746 ..     722     788 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0036
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeert 33 
                 +lVtG++G+GKt +l ++  +++dd +  t
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQDDPRTLT 468
                 58***********99999888866665544 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.012
     DUF2075   5 lVtGvaGtGKtvvllnllael 25 
                 l  G +G GKt+++++++ e+
  CDO70672.1 726 LLYGYPGCGKTLLASAVAKEC 746
                 678**************9998 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.17        86      13      44 ..     427     458 ..     421     469 .. 0.80
   2 ?    9.3   0.0    0.0013      0.65      25      42 ..     725     742 ..     722     745 .. 0.90
   3 ?   -3.2   0.0       8.7   4.4e+03     103     118 ..     778     793 ..     776     796 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.17
  Mg_chelatase  13 raleiaaaGgHnlllvGppGsGKtmlakrlps 44 
                   +a    + G   ll++G +G+GKt + +++++
    CDO70672.1 427 HAFSTRVRGVPGLLVTGRSGAGKTAMLHAVSK 458
                   5666667788899***********98877665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0013
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   lll+G pG+GKt+la+++
    CDO70672.1 725 LLLYGYPGCGKTLLASAV 742
                   89*************987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8.7
  Mg_chelatase 103 slahnGvLfLDElpef 118
                   s a+  vLf+DE+  +
    CDO70672.1 778 SAAKPCVLFFDEFDSI 793
                   778999******8765 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.3   1.5e+02       2      71 ..     440     510 ..     439     525 .. 0.66
   2 ?   10.8   0.0    0.0006      0.31       4      71 ..     728     790 ..     725     795 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.3
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk.....pklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      +v G  G+GK+ ++  + +      ++ p++  +t  +     + +p  +vr  +++ m +    k  +l+lD +
       CDO70672.1 440 LVTGRSGAGKTAMLHAVSKA----MQDDPRTLTYTLYVdlsrfSASPITKVRSHMKYWMEKAIWHKPSLLVLDNI 510
                      79999*******99999888....344444666666665666656666666665555554443335667777765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0006
  Viral_helicase1   4 hGvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                       G pGcGK+ l   +++++ l++ +++   ell++    ++++    ++ +  a+   +   +l++DE+
       CDO70672.1 728 YGYPGCGKTLLASAVAKECgLNFISIKG-PELLNKYIGASEKSVRDLFERASAAKP--C---VLFFDEF 790
                      599*****************99999999.9****9986666664444444333332..3...8999997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00036      0.18      22      48 ..     440     466 ..     429     473 .. 0.88
   2 ?    0.7   0.0       0.7   3.6e+02      22      39 ..     726     743 ..     721     747 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00036
      AAA_30  22 vltGpAGtGKttalkalreaweaaggr 48 
                 ++tG+ G+GKt +l a+ +a++++ ++
  CDO70672.1 440 LVTGRSGAGKTAMLHAVSKAMQDDPRT 466
                 79******************9987654 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.7
      AAA_30  22 vltGpAGtGKttalkalr 39 
                 +l G++G GKt + +a++
  CDO70672.1 726 LLYGYPGCGKTLLASAVA 743
                 678********9998886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0053       2.7      34      60 ..     437     463 ..     418     486 .. 0.78
   2 ?    4.3   0.0      0.05        26      31      58 ..     720     747 ..     712     795 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0053
       AAA_7  34 kpvllvGptGtGKtviikdllkkldke 60 
                   +l++G +G GKt++++ + k+++++
  CDO70672.1 437 PGLLVTGRSGAGKTAMLHAVSKAMQDD 463
                 56899**************99999843 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.05
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkld 58 
                 + +  +ll+G  G+GKt++++ + k++ 
  CDO70672.1 720 RLRSGLLLYGYPGCGKTLLASAVAKECG 747
                 566789*************999887765 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.31   1.6e+02       2      33 ..     439     470 ..     438     491 .. 0.88
   2 ?    9.7   0.0    0.0014      0.73       2      37 ..     725     759 ..     724     836 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.31
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqft 33 
                 +l++g  G +kt + +a++ka++ + + + +t
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQDDPRTLTYT 470
                 589999***************99887766665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0014
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdll 37 
                 +ll g PG +ktll++a+ak  +l+f  i+  p+ll
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKECGLNFISIK-GPELL 759
                 6899*********************98886.45555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.018       9.3       5      78 ..     439     514 ..     437     531 .. 0.70
   2 ?    5.5   0.1     0.024        12       5      22 ..     725     742 ..     723     754 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.018
      AAA_24   5 iliyGpsgiGKTtlakel......gpkplfidtekGlksldadkfpdieswedfldevvel..aaeladyktlviDtidele 78 
                 +l++G sg+GKT ++          p++l   +   l +  a        ++++++ ++++  +a +++ + lv+D+id+l+
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVskamqdDPRTLTYTLYVDLSRFSAS------PITKVRSHMKYWmeKAIWHKPSLLVLDNIDKLM 514
                 5899********9999886666554444333332222222233......566778888888888999999999999999986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.024
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yG +g GKT la+  
  CDO70672.1 725 LLLYGYPGCGKTLLASAV 742
                 689***********9876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0     0.002         1       2      25 ..     439     462 ..     438     468 .. 0.89
   2 ?    1.9   0.0      0.37   1.9e+02       3      26 ..     726     749 ..     724     758 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
                 EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellks 25 
                 +++TG++G GKt +++ v++++++
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQD 462
                 589****************99876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.37
                 EEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkss 26 
                 ++ G pG GKt l + v++++  +
  CDO70672.1 726 LLYGYPGCGKTLLASAVAKECGLN 749
                 57799************9998544 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0021       1.1      14      64 ..      94     142 ..      85     152 .. 0.78
   2 ?    1.5   0.0      0.65   3.3e+02      70      99 ..     579     615 ..     558     650 .. 0.67
   3 ?   -1.8   0.0       6.7   3.4e+03      56     108 ..     873     921 ..     856     935 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHH.HHHCTCCHHHHHHHH CS
          HD  14 rlaedlgeeedrellllaaLlHDiGkgpfgdafekk.eeefekflaHekvga 64 
                 ++ae lg   +   ++ ++LlHD+G  ++  a e    +++e+++ H+ + +
  CDO70672.1  94 QYAEGLG--LAMGDVVEIGLLHDLGYAKSV-ATEPVtADDWEILELHASHVE 142
                 6788888..8888999************66.455553555999999998876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.65
                 HHHHHHHH.HHHHHHHHHTTCCHHHHHHHH......H CS
          HD  70 vekrlgld.ledvaklirehheswegkkrp......r 99 
                 ++ +++++  e++a+++++h +++++ + p       
  CDO70672.1 579 LKPPSKDArKEILAHIVKQHMDRSDIVQDPasplnyT 615
                 333443337899***********99877775544440 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6.7
                 CHHHHHHHHHHHHHHHHHHHHH.........HHHHHHHHHTTCCHHHHHHHHHHHHCCTSCH CS
          HD  56 flaHekvgaeilrevekrlgld.........ledvaklirehheswegkkrprglaerqlsl 108
                  +a +++ ae+++e e+ +g d         le v ++i++h e +              s+
  CDO70672.1 873 AVAPSVDLAELAEETEGFSGADlqalmynahLEVVHDTISSHPEESL-------------SS 921
                 45566777777777777777766666666777777777777777665.............44 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.8   2.5e+03       1      19 [.     442     460 ..     442     469 .. 0.84
   2 ?   11.6   0.0   0.00055      0.28       1      26 [.     728     753 ..     728     776 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.8
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G  G+GK+ ++  + + +
  CDO70672.1 442 TGRSGAGKTAMLHAVSKAM 460
                 5889*****9998777655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00055
                 EE-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa 26 
                 +G PG+GK+ +++ ++++ g+ ++s 
  CDO70672.1 728 YGYPGCGKTLLASAVAKECGLNFISI 753
                 7*******************999985 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.17        87      24      46 ..     440     462 ..     434     510 .. 0.83
   2 ?    6.9   0.0    0.0063       3.2      23      43 ..     725     745 ..     721     750 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.17
                 EEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksde 46 
                  + G+ G GKt +++ + + ++ 
  CDO70672.1 440 LVTGRSGAGKTAMLHAVSKAMQD 462
                 689**********9999887655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0063
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 + l+G +G+GKt la+ + ++
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKE 745
                 569*************99886 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.6   2.9e+03      37      54 ..     103     120 ..      99     126 .. 0.86
   2 ?    7.6   0.0    0.0062       3.2       5      37 ..     439     472 ..     437     481 .. 0.81
   3 ?    0.3   0.0       1.1   5.7e+02       5      25 ..     725     745 ..     723     755 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.6
                 EHHHHTTTTTTT--SSHH CS
  APS_kinase  37 dGdnvRhgLnkdLgfsee 54 
                  Gd+v  gL +dLg+ + 
  CDO70672.1 103 MGDVVEIGLLHDLGYAKS 120
                 59************9875 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0062
                 EEEESSTTSSHHHHHHHHHHHHHHTT.--EEEEE CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekg.isvylLd 37 
                 +++tG sg+GK+++ +a++k+++++  + +y+L 
  CDO70672.1 439 LLVTGRSGAGKTAMLHAVSKAMQDDPrTLTYTLY 472
                 579******************9988635566665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.1
                 EEEESSTTSSHHHHHHHHHHH CS
  APS_kinase   5 vwltGlsgsGKstianalekk 25 
                 ++l G+ g GK+ +a a++k+
  CDO70672.1 725 LLLYGYPGCGKTLLASAVAKE 745
                 5789*************9875 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.27   1.4e+02      22      35 ..     439     452 ..     430     470 .. 0.88
   2 ?   -2.6   0.1       5.3   2.7e+03     109     170 ..     589     653 ..     580     661 .. 0.73
   3 ?    5.7   0.0     0.016         8      19      37 ..     722     740 ..     713     747 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.27
      ATPase  22 vlitGepGtGKtif 35 
                  l+tG +G+GKt +
  CDO70672.1 439 LLVTGRSGAGKTAM 452
                 59**********87 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.3
      ATPase 109 eelaeaikeika.krvviDsitgl.ayeekeavaReilrqlvrvl.kklgvTailvsekssseea 170
                 e la+++k+    + +v D+ ++l  +   +++    +  l+  + +     ai +s+ +ss+e+
  CDO70672.1 589 EILAHIVKQHMDrSDIVQDPASPLnYTALATQTEGYSVTDLKDLVaRAVHRAAIRTSQLDSSDES 653
                 56777777655547788888888855566677778888888888878888888888888777665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.016
      ATPase  19 grvvlitGepGtGKtifal 37 
                 ++  l++G pG+GKt++a 
  CDO70672.1 722 RSGLLLYGYPGCGKTLLAS 740
                 566899***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 6796.15
//
Query:       CDO70673.1  [L=528]
Description: hypothetical protein BN946_scf184761.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00011   22.1   1.5    0.00055   19.8   1.5    2.2  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.5   3.1e-08   0.00055       2      46 ..      24      96 ..      23      97 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.1e-08
  F-box-like  2 srLPdEiLlqIFsy.....L.ppsd......................LlrlalVCrrWrrvaldtplLWrrlv 46
                 rLP E+ + I +y     L + +d                      L++l++VC  Wr++ ld+p +W+ ++
  CDO70673.1 24 HRLPVELVVMISRYaidipLfHIYDcgsaavrrlqdcgapffqisrtLIPLSHVCQFWRNALLDNPAFWSVIY 96
                68999999999965433332122224444444555566666666666**********************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3500.18
//
Query:       CDO70674.1  [L=1000]
Description: hypothetical protein BN946_scf184761.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-78  264.4   0.0    2.4e-78  263.9   0.0    1.2  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain
    7.5e-19   68.3   0.0    1.4e-18   67.4   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      3e-11   43.8   0.0      5e-10   39.8   0.0    2.8  2  AlaDh_PNT_N      Alanine dehydrogenase/PNT, N-terminal domain
    1.2e-05   24.7   0.0       0.02   14.2   0.0    2.3  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0012   18.9   0.0     0.0036   17.4   0.0    1.7  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0069   16.3   0.1      0.016   15.1   0.1    1.6  1  NAD_binding_10   NAD(P)H-binding


Domain annotation for each model (and alignments):
>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.9   0.0   7.9e-82   2.4e-78       1     265 []     655     971 ..     655     971 .. 0.90

  Alignments for each domain:
  == domain 1  score: 263.9 bits;  conditional E-value: 7.9e-82
                   BTTTBHHHHHHHHHHHCCCHTTBECCCCCCCCCCCCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TCEEECCCCCEEC CS
  Sacchrp_dh_C   1 GldPGidhllamkaidevkakggkiesflsycgglpapeasdnplgYkfsWspegvlreltnpakvlengqvkevpgsellkgakkpiyilpglsle 97 
                   GldPGidh++am++++ ++a+g++i sf+s+cgglpape++d+plgYkfsWsp+gvl+++ n+a+++ +g++++++g +ll++ ++++++++ l+le
    CDO70674.1 655 GLDPGIDHCSAMSLLESLRAEGKQIVSFTSFCGGLPAPECADVPLGYKFSWSPKGVLSAASNSARFKLGGEERTIDGDDLLRKYFPDVPLSNVLKLE 751
                   9*********************************************************************************999*****7778*** PP

                   TTECEEECTHCHHHHHH...C.SCSEEEEEEEEEHHHHHHHHHHHTTT--SCEC..C........................................ CS
  Sacchrp_dh_C  98 gypnrdslpyeelyglp...eaktlfrgtlrypgfsellkslkelGllseepke..e........................................ 149
                   g++nrdslpy+++ygl     ++t+frgtlrypgf +l++++k +Gll+ + +   +                                        
    CDO70674.1 752 GLANRDSLPYADVYGLRpldGVRTIFRGTLRYPGFADLMHAFKSIGLLEASATVnpHhwhsvvrqalekklgtlimddpahctgsrsspsslseyaa 848
                   ***************8877678***************************998554537899999999999999999999988888888887777666 PP

                   ....CCCCHHST.........T.CEHHHHHHHHCCHHCCCCTTEEEEEEEEEEEEEETTSEE..EEEEEEEEEEE..EHHSSSHHHHHHHHHHHHHH CS
  Sacchrp_dh_C 150 ....alkawlse.........g.espldvlaalLekklalepgerDlvvlqhefgiesdgkk..kekktstlvgy..deegssamaktvGvpaaiaa 228
                       +      +         + ++p+d++a lL++kl+++pgerDlvvl+he+++++ g+   +e +ts+lv+y     ++sam++tvG+p+a+a+
    CDO70674.1 849 nadaS------TdgslpplpsKpTAPIDMFATLLAHKLRYQPGERDLVVLSHEIVARPGGTSaeEEIHTSSLVVYgtP--EASAMSRTVGLPVAFAT 937
                   55432......03445555422238*****************************999888877678888****99533..9**************** PP

                   HHHHTTSCTSSEEEEGGGS.CHHHHHHHHHHHHHCT- CS
  Sacchrp_dh_C 229 klildgkikkrGvvtpeelvdpeiyeplleeLekeGi 265
                    +ildg ++ rGv +p   +++e+y  +l +Le+ G+
    CDO70674.1 938 LQILDGGVRARGVQGP---TTKEVYGNVLRRLEEAGL 971
                   ******99********...999***********9985 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   4.6e-22   1.4e-18       1     130 []     536     651 ..     536     651 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 4.6e-22
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT- CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgv 94 
                      vl++G+G+v+ +++ +l ++ dv  +++va+ s + +++l a     +++++ +d+ + +a +++l++e d+v++l+p  ++ +v+++Ci+++ 
       CDO70674.1 536 VLMLGSGMVAPPAVAELCKRPDV--RLVVASNSIDDAKRLTA--PYANATPVLVDVGDLAA-VERLVAESDVVISLLPVPLHPSVAELCIRNQK 624
                      89*********************..***********999987..99***************.******************************** PP

                      EEEESS-BCGCCSCHCCSHHHHHTHHHHHHCTSEEE CS
  Sacchrp_dh_NADP  95 hyvdtsiskeertnyalreavlklkekakeagvtav 130
                      h v++s+         +++a+++l+e+a +a v+++
       CDO70674.1 625 HLVTASY---------ISPAMRELHERAVAADVVLM 651
                      *******.........*************9999865 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.7e-13     5e-10       1      76 [.      32     110 ..      32     194 .. 0.70
   2 ?   -0.9   0.0      0.64   1.9e+03      17     107 ..     546     646 ..     544     653 .. 0.57

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.7e-13
                  EE---SST..T----SS-HHHHHHHHHT.T-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.......C CS
  AlaDh_PNT_N   1 gvpkEika..gErRvaltPatvkkLvka.GhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkeps......e 76 
                  g+++E +a  +ErR +ltP+ v++Lv++ G+evlV++    ++ f+ +++ +aGa++ +    +l+ a++++++ke        +
   CDO70674.1  32 GIRREDPAriWERRCPLTPDAVRELVEKdGVEVLVQPCE--RRVFTAHDFLKAGAKLHP----TLQPAHVVVGIKETPlpevltD 110
                  68899544348**************99879*******99..****************94....66889********863444440 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.64
                  HHHHHHHHHT.T-EEEEETTTTGGGTC-HHHHHHTTEEEES.CH....HHHCTTSSEEEESS--...CHCGGG.S-TTCEEEEE--GGC.HHHHHHHH CS
  AlaDh_PNT_N  17 PatvkkLvka.GhevlVesgaGegagfsdeeYeeaGaeive.sa....eevlaeadlilkVkep..seeelel.lkegqtlisflhlaa.npelleal 104
                  P  v++L+k+ +++++V s+  + a+   + Y++a   +v+  +    e+++ae+d+++ + ++  +++  el +++++ l++ +++ +  +el e+ 
   CDO70674.1 546 PPAVAELCKRpDVRLVVASNSIDDAKRLTAPYANATPVLVDvGDlaavERLVAESDVVISLLPVplHPSVAELcIRNQKHLVTASYISPaMRELHERA 643
                  77778887774488888888877777778888877666665322111234777888888887763323333331455555555555443255666655 PP

                  HHC CS
  AlaDh_PNT_N 105 aek 107
                   ++
   CDO70674.1 644 VAA 646
                  555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.7e-06      0.02     126     187 ..     385     456 ..     367     489 .. 0.71
   2 !    8.0   0.0   0.00053       1.6      22     102 ..     529     610 ..     516     619 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.7e-06
                  ETTGGGT-SBTT-.-TBBTTSEEEEET.........TEEEEEBSTGGGGSHHHHHHHHHHHHHHHHHHHCHH CS
  AlaDh_PNT_C 126 DvAidqGGnvets.rltthgepvveek.........gvvhygvanlpgavprtasalltnntlpyleellad 187
                  D+++d  G +e + r+tt + p ++++          v++++v  lp+a+p +as+ ++++ lpyl+++++d
   CDO70674.1 385 DISCDVEGGLEFLsRHTTLSSPFYTVRpptlpahlpSVTMMAVDILPTALPLEASQHFSKAFLPYLRTIISD 456
                  66666533333333666666666665322222223379******************************9855 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00053
                  EETCB---EEEEESTSHHHHHHHH.HHHHTT-EEEEEESSHHHHHHHHH..TTTCECEEHCHHHHHHHHHHHH-SEEEE---BT CS
  AlaDh_PNT_C  22 gvpgvepakvlviGgGvaGlqAia.takglgakVtvlDvrparleqles..lgakfvevlksqeellaeavkeadvvigtvlip 102
                  gv+   + kvl +G G++   A+a  +k+ + + +v   +++ +++l +   +a+ v v   + +++++ v+e+dvvi+   +p
   CDO70674.1 529 GVQ--PKKKVLMLGSGMVAPPAVAeLCKRPDVRLVVASNSIDDAKRLTApyANATPVLVDVGDLAAVERLVAESDVVISLLPVP 610
                  444..4679*******9999997526888899988888888888888888799999999*******************977766 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0036      12      81 ..     533     605 ..     524     610 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET...-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgee...iealkleelkellaeadvvis 81 
                   +kkvl++G G++a  ++  L+++   ++vva  +++ ak+l   + ++    + + +l  +++l+ae+dvvis
    CDO70674.1 533 KKKVLMLGSGMVAPPAVAELCKRPDVRLVVASNSIDDAKRLTAPYANATpvlVDVGDLAAVERLVAESDVVIS 605
                   79********************98888**************9999554311167778999999********98 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   5.2e-06     0.016       2      68 ..     540     607 ..     540     657 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.2e-06
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-SEEEES- CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtdvedlaealkgadaVvsal 68 
                     ++G v+  +v+el +r ++++++   + +++++l a  ++++ v +dv d +++++ ++  d+V+s l
      CDO70674.1 540 GSGMVAPPAVAELCKRPDVRLVVASNSIDDAKRLTAPyANATPVLVDVGDLAAVERLVAESDVVISLL 607
                     68999999********86555555555678888887779**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 6543.31
//
Query:       CDO70675.1  [L=68]
Description: hypothetical protein BN946_scf184761.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.38s 00:00:00.91 Elapsed: 00:00:00.58
# Mc/sec: 353.58
//
Query:       CDO70676.1  [L=516]
Description: hypothetical protein BN946_scf184761.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-16   59.9  51.5    9.2e-11   41.3  35.8    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3  35.8   5.1e-15   9.2e-11      19     329 ..      84     391 ..      60     399 .. 0.73
   2 !   22.8  10.7   2.1e-09   3.8e-05      43     143 ..     393     495 ..     388     498 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 5.1e-15
       MFS_1  19 lplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk 116
                 l  + ++++   +  i+++ ++ ++  a + ++++ ++d  +r   +++ ll+++lg +++++ a+++ +l+++ +l ++g+ +l  +++++iad+++ 
  CDO70676.1  84 LA-FATSTFD-KHGLISTIQVAQSIIIACGKPVIAKVADVSSRGTSYIVVLLFYVLGyIVIAS-ANGVGALAAGIILYAIGYTGLQLLSQIIIADITTL 179
                 22.5566666.777899999********************99999************333333.48888****************************** PP

       MFS_1 117 eergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.... 210
                 + rg++ ++ sa f + a +g  ++  ++++  Wr+ + ++ai+   ++  l++ l+++e++++k    ++      p+ l pa+ + l ++ +w    
  CDO70676.1 180 KWRGFVSSMTSAPFIINAFIGSNISTSMLEHSTWRWGYGMFAILVPASLSpLIITLFWAERKAKKLGLVRPP-----PKRLEPAFHIALLRK-VWlyae 272
                 *************************************99999998888445555666666666666544444.....444555344444444.333454 PP

       MFS_1 211 .illialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrls.dr..lgrrrrlllallllllaalglallavtssavll 303
                  + +++l++   g++ +l+llpl l +  +    +  +++  + ++++v ++++ ++  +  +r  +   rr l + +++++a +g++ +  +  ++ +
  CDO70676.1 273 qLDVVGLAIL--GTAVALILLPLTLAQGAKGQwdNPSMIA--MIVVGCVLLPVFAVWDIYFaKRpvF--PRRFLTNRSVVFAAWIGFFDFFSFYMSFTY 365
                 4344444444..5666777777744555555566546666..8888888888899999999455533..346666666666666666666666578888 PP

       MFS_1 304 llvlvliGfglgfvfpsllalasdla 329
                 l+++vl++  ++++ ++++++++ +a
  CDO70676.1 366 LYSFVLVTKSWSLIDATYFNQTQTVA 391
                 88999999999999999999998877 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.1e-09
       MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGail 136
                  ++++a+ +++r+  r+  ++vl +gl + +lg + l+++     +s   +++  +lqG+g+g++  a+++ + + +p+ + +++++++ + + +G ++
  CDO70676.1 393 TVFGIAAGFAMRFLRRY--KWVLTCGLCIRLLG-VGLMIHsrganASDAEIVWTQLLQGIGGGFASVASQVGAQASVPHVDVAMVTAVVLLWTEIGGAV 488
                 35577777777777777..88************.5555423555666778************************************************* PP

       MFS_1 137 gpllggl 143
                 g ++g++
  CDO70676.1 489 GSGVGAF 495
                 ****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.57
# Mc/sec: 2723.27
//
Query:       CDO70677.1  [L=219]
Description: hypothetical protein BN946_scf184761.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-30  102.8   0.0    1.6e-29  102.0   0.0    1.4  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   8.7e-34   1.6e-29       2      97 ..      57     152 ..      56     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 8.7e-34
                    EEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEEE CS
  Ribosomal_S10   2 irlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsvev 97 
                    ++++Sy+ +lL+ +v+++ +aa  lgi++++pv+lPt+r+ +tvl+ p+v+kks+e+fe+rthkR+++ +da++e ++ l+++l++++ +gV+++v
     CDO70677.1  57 LHFRSYHQNLLDFFVHFAGHAAAALGIPISKPVHLPTERRLWTVLRGPFVHKKSQENFERRTHKRVLKAWDAHPEAVELLVQYLEKHIAAGVGMRV 152
                    789******************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.55
# Mc/sec: 1205.90
//
Query:       CDO70678.1  [L=570]
Description: hypothetical protein BN946_scf184779.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3680.59
//
Query:       CDO70679.1  [L=92]
Description: hypothetical protein BN946_scf184779.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-16   58.0   0.0    9.9e-16   57.9   0.0    1.0  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   5.5e-20   9.9e-16       1      63 [.      23      84 ..      23      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 5.5e-20
     Plavaka  1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpd 63
                F+n++++l++iD+lp+ +p+w +e+ +++g++ +e+++++++e+elw rdp+e+i+el+gnp+
  CDO70679.1 23 FHNKRSFLRKIDALPD-GPRWICEQWEIQGDTIGEDGEMKTKEIELWRRDPVECIHELIGNPS 84
                9***************.********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 675.31
//
Query:       CDO70680.1  [L=230]
Description: hypothetical protein BN946_scf184779.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.14   11.4   0.0        0.2   10.8   0.0    1.2  1  Transposase_21  Transposase family tnp2
       0.57   10.9   9.1       0.81   10.4   9.1    1.2  1  PCNP            PEST, proteolytic signal-containing nuclear p
        1.1    9.1   3.4        1.9    8.3   3.4    1.3  1  DivIC           Septum formation initiator
        3.3    6.2  16.6        4.3    5.8  16.6    1.1  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.5e-05       0.2     116     161 ..     163     208 ..     151     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
  Transposase_21 116 ekfnlravllwtindfPalstlsGlstkgklacvtCkknteslrlk 161
                     e  ++    ++t+n fP+  +ls  +tkg +++   ++++ ++ l+
      CDO70680.1 163 EAIEIFMTYIYTVNAFPGAIQLSAFATKGWQTACANHEEPANYELS 208
                     5556666789*******************98777778888777776 PP

>> PCNP  PEST, proteolytic signal-containing nuclear protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   9.1   0.00018      0.81      27     113 ..       5      91 ..       1      93 [. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
        PCNP  27 ssrsaekrsaeeeeeskeappapskisKigfslskqaakkkkpisiklgas.skPkeeapklaa.kkptvaavfnedddsEPEEmPaEa 113
                  +r+++++s+  + e+   + +p + sK   +l ++a++k+++ + kl+++ +k k+++++  + +k  +++  + ddds+P+ +P+E+
  CDO70680.1   5 RKRAQRHESEPTDPEN--CAKRPHRPSKKKQALVDEASEKQSKENEKLKKAiKKLKRQVASHKKsRKGLLSSSDSGDDDSDPDHLPPES 91 
                 3344444444333333..34445555555555667888888888888888834556565555441455567777889**********96 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4   0.00042       1.9      30      56 ..      37      62 ..      29      74 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00042
                HHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC 30 qaelaklkaeneeLeaevkdLksdedy 56
                 +  +k+++ene+L++ +k+Lk  + +
  CDO70680.1 37 DEASEKQSKENEKLKKAIKKLK-RQVA 62
                5556777777777777777774.4444 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  16.6   0.00095       4.3     300     368 ..      13      86 ..       3      97 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00095
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX.....XXXXXXXXXXXXXX CS
  TFIIF_alpha 300 edkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkd.....SddeedsddsDide 368
                   +  ++E+ +k+  + + ++++  +e +e+++k+++k kka k++k++  ++kk+     S++++ +ddsD d+
   CDO70680.1  13 SEPTDPENCAKRPHRPSKKKQALVDEASEKQSKENEKLKKAIKKLKRQVASHKKSrkgllSSSDSGDDDSDPDH 86 
                  33345555555555555555555555555555555555554444444433333221222255777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2373  (0.132355); expected 358.6 (0.02)
Passed bias filter:                     1325  (0.0739026); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 1548.12
//
Query:       CDO70681.1  [L=205]
Description: hypothetical protein BN946_scf184779.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.48
# Mc/sec: 1289.30
//
Query:       CDO70682.1  [L=301]
Description: hypothetical protein BN946_scf184779.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.086   12.3   0.7       0.13   11.7   0.5    1.4  1  Intg_mem_TP0381  Integral membrane protein (intg_mem_TP0381)


Domain annotation for each model (and alignments):
>> Intg_mem_TP0381  Integral membrane protein (intg_mem_TP0381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   7.4e-06      0.13     135     192 ..     140     197 ..     134     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-06
  Intg_mem_TP0381 135 iapllllllgkykptlkdiiksvlvlfllvlliflvNlllgtNYfFlnrkpsnlsild 192
                      +++ l+++l ++k  ++++  s l++ ++ ll+f++ ++l +N ++++    ++++l+
       CDO70682.1 140 LTGTLVTVLLRSKTGFRRYAASRLLTSIIGLLTFIFAIILPGNLIYIGIAIVGVKPLS 197
                      5677889999*************************************98777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2249.28
//
Query:       CDO70683.1  [L=259]
Description: hypothetical protein BN946_scf184779.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1892.50
//
Query:       CDO70684.1  [L=259]
Description: hypothetical protein BN946_scf184779.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.03   14.5   0.1      0.086   13.0   0.1    1.8  1  NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
      0.075   12.3   0.1       0.11   11.7   0.1    1.3  1  DUF3150       Protein of unknown function (DUF3150)


Domain annotation for each model (and alignments):
>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.6e-06     0.086      20      43 ..      11      35 ..       6      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.6e-06
  NOB1_Zn_bind 20 dmtkkFCpkCGn.ktLkrvavsvde 43
                  ++++kFC +CG+ + Lk++  s+d 
    CDO70684.1 11 TSRRKFCRHCGSlSVLKKIHGSLDT 35
                  5689********9999999988886 PP

>> DUF3150  Protein of unknown function (DUF3150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.3e-05      0.11      83     146 ..      26      90 ..      22     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
     DUF3150  83 aeevvkeLekikqeFekekqeFLarydravedWinenp.ewaeiIraavpsaetvaerlsfdyql 146
                 ++++   L++++++F +  q+ L++ ++++ dW  +   + ++++r+++ s+ + ++   f+ + 
  CDO70684.1  26 LKKIHGSLDTLERTFLEIVQDVLNACQQQLYDWWRSFQkNANNVVRDEIASRHASKTLSAFERSD 90 
                 5688999**************************99987577889999999988777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1985.37
//
Query:       CDO70685.1  [L=771]
Description: hypothetical protein BN946_scf184779.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0057   17.3   0.0      0.022   15.5   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   16.2   0.0      0.036   14.7   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
      0.039   13.7   0.0      0.085   12.6   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.058   14.1   0.0       0.16   12.7   0.0    1.8  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.9e-06     0.022       7      79 ..     598     675 ..     594     694 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.9e-06
                      TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCG.BS.SSTTTEEEEEEESTGGGSSH CS
  Methyltransf_25   7 GtGrltlalakrl.gkakvtgvDiseemleaareraeeegl..nvefvqgdaed.lp.fedgsfDlvvssgalhhlsd 79 
                      GtG++  a   rl + + vt +D++++ l+ a++r++++g+   +e++++++ d lp + +g++D v +++++h+l+ 
       CDO70685.1 598 GTGHYPVASVSRLaKTKLVTLLDLNPNTLAMAEQRLSAAGYrsMLECLEHSIFDpLPeLMNGRYDSVALFYVFHCLPG 675
                      888888777777756899********************999888899999996658845899*******999999873 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.9e-06     0.036      16      75 ..     609     676 ..     595     695 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.9e-06
                      HTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCC.TS.S-TT-EEEEEEES-CCC-..C CS
  Methyltransf_11  16 krg..arvvgvDlskemlklakekaseegl..kvefvvadaek.lp.fednsfDlvvssevlhhv..e 75 
                      + +  + v+ +Dl++++l++a+++ s +g    +e+++ ++ + lp + ++ +D v ++ v+h +  e
       CDO70685.1 609 RLAktKLVTLLDLNPNTLAMAEQRLSAAGYrsMLECLEHSIFDpLPeLMNGRYDSVALFYVFHCLpgE 676
                      22245789*********************99999********977558899************99542 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05     0.085      13      88 ..     598     674 ..     596     692 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  Methyltransf_31  13 GtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnala 88 
                      GtG++  +  ++l + + v+++D +++ +  A+++++  g+   +e  + +i++ l++l++  ++D +  + v+++l+
       CDO70685.1 598 GTGHYPVASVSRLAKTKLVTLLDLNPNTLAMAEQRLSAAGYRsMLECLEHSIFDpLPELMN-GRYDSVALFYVFHCLP 674
                      677777777778888888************************8899999********9755.89******99998765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05      0.16      19      80 ..     612     679 ..     595     695 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
  Methyltransf_12  19 pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhl.....k 80 
                      +++ +t +D++p+ ++ a+++l++ + ++   +e  + +++d  ++   + +D v ++ v+h+l      
       CDO70685.1 612 KTKLVTLLDLNPNTLAMAEQRLSAAGYRS--MLECLEHSIFDPLPElmnGRYDSVALFYVFHCLpgefpT 679
                      455578********************977..555566666666666778**************9755432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5612.19
//
Query:       CDO70686.1  [L=312]
Description: hypothetical protein BN946_scf184798.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-57  195.0   0.1    2.4e-57  194.6   0.1    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.1   1.3e-61   2.4e-57       6     256 ..      15     298 ..      12     303 .. 0.91

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 1.3e-61
                 SS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT.TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-E CS
        PALP   6 gpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg.tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGae 103
                  +TPl+r++ +s  l+++++lKlE l+p+ SfK Rg+++  +++ ++  +  +++ assGN+g+a+A++a++l+l++t+++p+++  +  + +++ Ga+
  CDO70686.1  15 SETPLIRSNHISSLLQCDVYLKLETLQPSQSFKYRGISHFAQHALRTyGRDVHLIIASSGNAGIAAACVANMLNLRCTVFLPRGVDRATMEYMKREGAD 113
                 58*****************************************77776899************************************************ PP

                 EEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT..TTEEEEEEE-SSSHHHHHHHHHHHHHSTT.-EEEEEEECTTCGGT CS
        PALP 104 vvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg..gkpdavvvpvGgGgliaGiaaglkerrpd.vrvigvepegsdala 199
                 +v  g+ y +a++aa+++ +++++a++v+ +d+p v+eg++++  Ei  ql+  +kpda++++ GgGgl++G++ g k++++d v +++ve+ gs++++
  CDO70686.1 114 IVIEGEYYSQALQAAEKAVRSEPKAIMVPGYDDPIVWEGHASMIHEIRTQLPegTKPDAIFCSFGGGGLAGGVMEGCKAAGWDdVPLVAVETHGSNCFY 212
                 ****************999999*****************************999*************************55555*************** PP

                 TCC......S..S.SS..B...............................SSS.CCSTCSCGTTCCHHHH.SEEEE.EEEEEEHHHHHHHHHHHH CS
        PALP 200 rsl......ragrrvtvpvs..............................dtiadglavgspselafell.drlvd.eivtvsdeealeamrlla 256
                 +sl                +                              ++ a++l+++sps+ +++ + +r+++ + v v+de a++a+  +a
  CDO70686.1 213 QSLslnvgpF---------AgdvasrpvpegttarlcsehdvavahlsalTSKATSLGASSPSPAVVKKAlERKGGvKSVCVPDEMAMQAALNFA 298
                 ***6666662.........044444444477779999999********************888888877655555569************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2379.56
//
Query:       CDO70687.1  [L=774]
Description: Glycoside Hydrolase Family 31 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-87  292.0   0.0    6.3e-63  213.5   0.0    2.1  2  Glyco_hydro_31   Glycosyl hydrolases family 31
    2.6e-17   62.9   0.1    5.7e-17   61.8   0.1    1.6  1  Gal_mutarotas_2  Galactose mutarotase-like
  ------ inclusion threshold ------
      0.035   14.4   0.0       0.11   12.9   0.0    1.8  2  DUF4968          Domain of unknown function (DUF4968)


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.5   0.0   1.1e-66   6.3e-63       1     285 [.     267     570 ..     267     579 .. 0.90
   2 !   76.6   0.0   3.5e-25   2.1e-21     346     440 .]     585     680 ..     578     680 .. 0.89

  Alignments for each domain:
  == domain 1  score: 213.5 bits;  conditional E-value: 1.1e-66
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT...--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTC................... CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsryg...ykdeeeveevvdkfreagiPldvivlDidymdkrk................... 73 
                     +v++Gptp e++++yt+ltGrpal+P w++G+++s+     y de++v  +++ ++ ++ P+ v++lD+ +m++++                   
      CDO70687.1 267 FVIYGPTPLEILERYTRLTGRPALLPAWTFGLWLSTSFltsY-DEKTVSGFLEGMQTRNCPVRVFHLDCFWMKQYEwyvprpdlacqwlgyitfv 360
                     899*********************************987655.******************************88779999999999******** PP

                     ......CTB-.TTTSS-HHHHHHHHHHT.T-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS...TCECT...SSEEEEB-TTSHHHHHH CS
                     ......xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx...xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  74 ......dftwdkerFpdpkemvdelhek.gvklvvivdpaiskqeeeyeafdegkekgvflknkdgs...ykgkw...pgstafpDftnpearew 155
                            ft+d+e+Fpdpk+++ e+++k gv+++v+++p+is+    ++ f+e++ +g+++k+kdg+      +w   +    ++D+tnp+ar+w
      CDO70687.1 361 gggfrcSFTFDPENFPDPKAYLYEIKQKyGVQICVWINPYISQL---SPIFQEAVREGYLIKRKDGTpwqE--RWdlwQPGLGVVDVTNPDARKW 450
                     *************************9888************765...69*****************98542..3433344567************ PP

                     HHHHHHHHHCTCT--EEEE-STTTB.SCCCCHHHHCCCTSCETTCC.HHHHCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE- CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 156 wkkelkkflldlgvdglwiDmnepsnfeegsdseekeaketkaags.hydvhnlygllmakatyeglkekkpkkrpfiltRstfaGsqryaahWs 249
                     ++ +l + l+dlgvd +++D++e   + +             ++gs  +++hn+y++ +++ +++ l+++  k +++++ Rs+++G qr+++hW 
      CDO70687.1 451 YEAKL-DALIDLGVDTFKTDFGERTPHADVV----------FHDGSdPKRIHNTYSVIYNEMVFRLLERRFGKGEAVVFARSATTGGQRFPVHWG 534
                     **998.566799***********65433333..........344444689*********************9*********************** PP

                     -S-BSSHHHHHHHHHHHHHHHTTT--SEEEECT-SG CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 250 GdnassWeslresipallsfslsGvpfwgaDigGFe 285
                     Gd++s++e ++e+++++ls++ sG++f ++DigGFe
      CDO70687.1 535 GDCESTFEAMAETLRGGLSLTSSGFAFASHDIGGFE 570
                     ***********************************4 PP

  == domain 2  score: 76.6 bits;  conditional E-value: 3.5e-25
                     HHHHHHHH---SEE-HHHH-TT-CCCCC--S-EEETTTEEE----STT-SEEEEEE-SSEEEETTT--EEESSE.EEEEE--TTSS-EEEETTEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 346 lfyeahetglpvvrplflefpedektfdiddqfmfGdsLLvaPvleeeatsvevyLPggkWydfwtgekyeggq.tveltapldeiplfvraGaI 439
                     l+ + +++g p+ r++f+ef ed++t+++d+q+mfG+sLLvaPv+ +e ++ e yLP+g+W+ f++ ++ + g   v+  + +de+p++vr+G++
      CDO70687.1 585 LALQGNTKGHPIQRAMFIEFLEDRTTHHLDRQYMFGPSLLVAPVFVPEGEESEYYLPEGRWTSFFHPSRTQAGPaWVKEVVAIDELPVWVRQGSV 679
                     5678899**************************************99999*******99*****999888886634444445788*********9 PP

                     E CS
                     x RF
  Glyco_hydro_31 440 i 440
                     +
      CDO70687.1 680 L 680
                     7 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.1   9.6e-21   5.7e-17       2      65 ..     187     245 ..     186     246 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 9.6e-21
                      -EEEEEES-SS-SS-TTEEEEE-----TS-HCC.CTS-SCEEEEEEEETCEEEEEE--SSSEEE CS
  Gal_mutarotas_2   2 ehvyGlGEkagplnlrgtryrlwntdafgyeaessdplYgsiPfmislsegyGvfvdnpaetwf 65 
                      e +yGlGE++gp+ ++g+++ +wn+d       ss++ Y+ +Pf+++ ++ yGvfv++p+e++f
       CDO70687.1 187 ELIYGLGEQFGPFVKNGQSVSIWNQDGGT----SSEQAYKCVPFYLT-NRNYGVFVNHPGEVEF 245
                      789************************96....5779**********.**************99 PP

>> DUF4968  Domain of unknown function (DUF4968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05      0.11      17      86 ..      55     126 ..      47     132 .. 0.82
   2 ?   -3.3   0.0       1.9   1.1e+04       6      32 ..     234     260 ..     230     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
     DUF4968  17 itvltd..diiRvryapdgefeedesyavvkkadektefeveekedevvikTekltvkieksplrisfydke 86 
                 ++v+++   +i v+++  +++++ +  a+  ++ +  ++++ ++e++++++T  l+++i ++p +i+f    
  CDO70687.1  55 VRVYSPteGVIGVKIEHFKHVDPTPNIALFPDDPPVPSVSLAKTETTWSVTTGGLKAEITQNPYAITFKSPT 126
                 4455431158888888888888899999999999*********************************97655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
     DUF4968   6 vefttenaelritvltddiiRvryapd 32 
                   f +  +e++ +v ++++ Rv ++  
  CDO70687.1 234 GVFVNHPGEVEFEVASEKVSRVGANVA 260
                 556667788999999999999977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4963.05
//
Query:       CDO70688.1  [L=269]
Description: hypothetical protein BN946_scf184798.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-09   38.3   0.1      3e-09   37.7   0.1    1.3  1  Myb_DNA-bind_3   Myb/SANT-like DNA-binding domain
    4.9e-09   36.4   0.2    7.8e-09   35.8   0.2    1.3  1  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain
    0.00097   19.2   0.2     0.0025   17.9   0.2    1.6  1  Myb_DNA-bind_5   Myb/SANT-like DNA-binding domain
     0.0077   16.4   0.3      0.014   15.6   0.3    1.5  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.034   13.3   0.4      0.048   12.8   0.4    1.2  1  TAP42            TAP42-like family
      0.092   13.0   0.2       0.18   12.1   0.2    1.4  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
       0.39   11.1   6.6       0.68   10.3   6.6    1.4  1  CENP-B_dimeris   Centromere protein B dimerisation domain
        1.9    6.5   4.7        2.7    6.0   4.7    1.1  1  DNA_pol_phi      DNA polymerase phi


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   1.3e-12     3e-09       1      96 []      37     136 ..      37     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.3e-12
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefna..ktgakytkkqlknrlkklrkeyklvkellersg.fsWDpttktvtAd..d 90 
                     +W++eeekil+d l++  k+    ++  ++k  w+ +++++ a   +ga +t +++kn++ +l+k y ++  l +  + +++D+++    ++  +
      CDO70688.1  37 HWTEEEEKILIDFLATDGKAAAA-DGANYRKPVWEAAARKLGAlpCKGAPKTWQVCKNKWGRLKKAYWAIVVLENYGSgLTYDEEKGAGITEdmE 130
                     6****************999999.8******************99899**************************99888******9986666467 PP

  Myb_DNA-bind_3  91 evWkey 96 
                     e+W++y
      CDO70688.1 131 EIWAAY 136
                     999998 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   3.5e-12   7.8e-09       3      68 ..      37     103 ..      35     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.5e-12
                     SS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHH...HC----HHHHHHHHHHHHHHHH CS
  Myb_DNA-bind_4   3 kWteeetklLieawgerilelrfqergkkrnkklWeevaeamae...rgykrspeqCkeKienLkkrYk 68 
                     +Wteee k Li++  ++   +   ++ + r+  +We+ a+++ +   +g +++ + Ck+K+  Lkk Y 
      CDO70688.1  37 HWTEEEEKILIDFLATDGKAAA-ADGANYRKP-VWEAAARKLGAlpcKGAPKTWQVCKNKWGRLKKAYW 103
                     8***************766665.4579****9.********976233699*****************96 PP

>> Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.1e-06    0.0025       3      70 ..      36     100 ..      35     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
  Myb_DNA-bind_5   3 knfseeEkevLvelveknksilegkksdaatnkaKsraWeeiaervna..lgsveRtaeelkkkwedlkr 70 
                     ++++eeE+++L++++ ++     gk+++a   ++++ +We  a+++ a  + + ++t++  k kw +lk+
      CDO70688.1  36 AHWTEEEEKILIDFLATD-----GKAAAADGANYRKPVWEAAARKLGAlpCKGAPKTWQVCKNKWGRLKK 100
                     68**********999887.....6777778899***************544555**************97 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   6.1e-06     0.014       3      42 ..      37      95 ..      35      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.1e-06
                     SSBHHHHHHHHHHHHH...........HTTC.HHHHHHHHTS.......S-HHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkk...........hGnr.WkkIaerlgg.......Rtekqcrsrw 42
                      WteeE+++L++ ++            + +  W++ a++lg        +t   c+++w
       CDO70688.1 37 HWTEEEEKILIDFLATdgkaaaadganYRKPvWEAAARKLGAlpckgapKTWQVCKNKW 95
                     6***************6666666665555337******999556777999999999999 PP

>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   2.1e-05     0.048     247     296 ..     167     212 ..     115     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
       TAP42 247 qkkVfgpghslPtMtvdEyleeevrrGniiegggeasakeeeeeedeeed 296
                  ++Vf++gh  P+   ++  +e  +    +++ +++ a+e+ee++de++d
  CDO70688.1 167 GSNVFRAGHVQPSQAAEDQGDENEA----MNDDQTQPADEDEEADDEDDD 212
                 589**********999999999877....888888999998887766666 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   7.9e-05      0.18       1      44 [.      38      99 ..      38     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.9e-05
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygn............dWknIaealn.......rRtpkqcfdrwknkLr 44
                    WteeE++iL++   + g+             W+  a+ l+        +t + c+++w + L+
      CDO70688.1 38 WTEEEEKILIDFLATDGKaaaadganyrkpVWEAAARKLGalpckgaPKTWQVCKNKWGR-LK 99
                    ***************6555555555556567********88*****99**********98.75 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.6   0.00031      0.68       8      44 ..     181     217 ..     174     233 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00031
  CENP-B_dimeris   8 agedsesesdeeeeeeeedeededeeddedddevpvp 44 
                     a ed   e +  ++++ +  ++++e ddeddd v +p
      CDO70688.1 181 AAEDQGDENEAMNDDQTQPADEDEEADDEDDDVVILP 217
                     5566555544444444444444555688888888777 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.7    0.0012       2.7     648     676 ..     181     212 ..     162     237 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0012
  DNA_pol_phi 648 deeeeeeddeededse...edddeeesdedee 676
                    e++++++e ++d++    d+dee +ded++
   CDO70688.1 181 AAEDQGDENEAMNDDQtqpADEDEEADDEDDD 212
                  23333333333333331112222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1863.28
//
Query:       CDO70689.1  [L=385]
Description: hypothetical protein BN946_scf184798.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-60  202.9   0.2    8.6e-60  202.6   0.2    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.2   4.8e-64   8.6e-60       7     294 .]      17     344 ..      12     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 4.8e-64
                 S--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT.TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EE CS
        PALP   7 pTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg.tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaev 104
                 +TPl+r+  +s  l+++++lKl+ l+p  SfK Rg+++  +++ ++  +  +++ as+GN+g+a+A+aa++l l++t+++p++++++ ++ +r  Gaev
  CDO70689.1  17 ETPLIRSSHISSLLQCDVYLKLDTLQPAQSFKYRGISHFAQYALRTyGPDVHLIIASGGNAGLAAACAAKVLSLRCTVFLPHGVNQSTIDFMRKEGAEV 115
                 7************************************99999666668*************************************************** PP

                 EEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT..TTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EEEEEEECTTCGGTT CS
        PALP 105 vevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg..gkpdavvvpvGgGgliaGiaaglke.rrpdvrvigvepegsdalar 200
                 v  g+ y ++++aa+++ + + +a++v+ +d+p  +eg+++++ Ei++ql+  +kpda++++vGgGgl+aGi+ g k  ++ dv ++ ve+ gs+++++
  CDO70689.1 116 VIEGDYYLQTLQAAKKAVQTEIKAVMVPAYDDPVLWEGHASMVHEIKRQLPhgTKPDAIFCSVGGGGLAAGIMDGCKIvGWDDVPLVTVETHGSNCFYQ 214
                 ***999**************9*****************************999*************************88888**************** PP

                 CC........S..S.SS..B...........................SSS.CCSTCSCGTTCCHHHH.SEEEE.EEEEEEHHHHHHHHHHHHHHHSB-B CS
        PALP 201 sl........ragrrvtvpvs..........................dtiadglavgspselafell.drlvd.eivtvsdeealeamrllarregivv 263
                 sl           ++     s                          ++ a++l+++sps+ a++ + +r+++ + v +sde a++a+  +a++++ +v
  CDO70689.1 215 SLslndgpfaG--EV-----SsrsvpegtrperceeykvtiahlatlRSKATSLGASSPSAAAVRKAlERKGGvRSVCISDEMAMQAALNFAEDHKTLV 306
                 **777666441..33.....03333466777778888999*****************777777766646666679************************ PP

                 -HHHHHHHHHH.......HHHHHHCCTTCEEEEEEE-B CS
        PALP 264 epssaaalaal.......klreagelkegdrvvviltg 294
                 e ++ a +a +       kl+  ++ ++ + vv++++g
  CDO70689.1 307 ELACSATIAPAykptifsKLVPESKSNKRAIVVLVVCG 344
                 **999999988899888888888888888999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2639.32
//
Query:       CDO70690.1  [L=93]
Description: hypothetical protein BN946_scf184798.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-25   89.8   0.1    1.7e-25   89.3   0.1    1.2  1  Pet100    Pet100


Domain annotation for each model (and alignments):
>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.1   9.3e-30   1.7e-25       1      70 [.       1      80 [.       1      83 [. 0.96

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 9.3e-30
      Pet100  1 MGgwnLEvfkfglYvffPvgvfyyfnqpeyfeefvvktkreffp.........peeke.lreeleelkeerlakrekklk 70
                MGg+nLEvfkfg+YvffPv++++++++p+++ ++v+++k+++fp         p++++ l+eel++++++ l++++++ +
  CDO70690.1  1 MGGPNLEVFKFGVYVFFPVVMLLHYGNPDWYAKNVLPYKEKIFPpehrlvtklPTDSTtLKEELAKIRARNLERKAQRDA 80
                *****************************************************999999***************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 665.97
//
Query:       CDO70691.1  [L=236]
Description: hypothetical protein BN946_scf184798.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-05   24.2   0.1    7.3e-05   23.1   0.1    1.5  1  Copper-bind      Copper binding proteins, plastocyanin/azurin
  ------ inclusion threshold ------
        5.3    6.9   7.5         17    5.2   7.5    1.8  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
        8.1    6.8  23.0        3.6    8.0   9.6    2.7  3  DUF3446          Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> Copper-bind  Copper binding proteins, plastocyanin/azurin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.2e-08   7.3e-05       8      96 ..      56     148 ..      49     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.2e-08
                  TTETSEEESSEEEEETTEEEEEE.EESSSSBEEEEETTSSTTTGGGTTSCTTCEEEEBSTTEEEEEEEESSEE.EEEEET.T.TTTTTSEEEE CS
  Copper-bind   8 esgdlqFetkeitvkkgekvtfv.nlavmgHNvvldkdgvpagvdkdkvkaedetkliggGekdsvtfdeagt.YkffCs.P.HaaagMkgkv 96 
                  ++g+++F+++++t ++g+ vtf     +++H v     + p +  + +  ++  ++    G ++++++++ +    ffC+ P H ++gM+g +
   CDO70691.1  56 AGGNFVFSPANVTASNGTLVTFFfPDGGIPHSVTQGDFSNPCQPIAAQGGQNGFDSGLQMGTQFTLNVTNDQIpIYFFCKaPtHCGLGMVGSI 148
                  3456*************98876515689****998875555444444444444666677889999988877767889**************98 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.5    0.0029        17       9      44 ..     197     232 ..     192     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0029
  Phage_holin_2_4   9 laaagnkatggGavvsfaGflasselialvGlavAl 44 
                       aa g+ ++g  ++ + +   ass ++a++GlavA+
       CDO70691.1 197 AAASGSSSSGSSGSSGAMALTASSAVAAVFGLAVAM 232
                      35666666666666677788899999*********7 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.5    0.0015       8.7      35      74 ..      25      64 ..       4      74 .. 0.62
   2 ?   -2.2   0.0       0.9   5.4e+03      26      39 ..     143     156 ..     140     175 .. 0.58
   3 ?    8.0   9.6    0.0006       3.6      29      72 ..     186     226 ..     179     231 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
     DUF3446 35 sspsssssssssssssssspslscsvaaqqsselehiYsa 74
                ++p +s+++s+++++++ s++ s s +    +  + ++s+
  CDO70691.1 25 PAPGPSATTSTQAAAAAPSAPPSTSGQIDVGAGGNFVFSP 64
                3344555556666666666777877766777777777774 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.9
     DUF3446  26 glvgvanppsspss 39 
                 g+vg  n+pss  +
  CDO70691.1 143 GMVGSINAPSSGNT 156
                 56655566655433 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0006
     DUF3446  29 gvanppsspsssssssssssssssspslscsvaaqqsselehiY 72 
                  v   +++p+s+ss+++s ssss+s+  s ++a + ss +  ++
  CDO70691.1 186 AV---ATAPPSASSAAASGSSSSGSSGSSGAMALTASSAVAAVF 226
                 33...344555555555556666666666677666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1720.79
//
Query:       CDO70692.1  [L=297]
Description: hypothetical protein BN946_scf184798.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2123.48
//
Query:       CDO70693.1  [L=433]
Description: hypothetical protein BN946_scf184798.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-35  121.8   0.1    1.1e-34  119.6   0.1    1.9  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
    5.8e-18   65.2   0.0      1e-17   64.4   0.0    1.4  1  DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.1   1.3e-38   1.1e-34       1     211 []     113     371 ..     113     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1.3e-38
                  EEEEES--S-TT---...-HHHHHHHHHHH.......HTT--SEEEEES-SSBTTSHHHHHT---.........S--SSHHHHHHHHTHHHHTTS-TT CS
  DNA_pol_E_B   1 vvivsglnldndnrs...leaLrkiLqgya......peesppdvlilaGnfvdaahkaiasskvs.........tdekkenfdalalllsilesllek 80 
                  v++vsgl++ ++n     ++ L ++L+         ++++++++li+aGn++ a + + a+++++         +d++++ + + ++l + l +++ +
   CDO70693.1 113 VALVSGLEVGSANPAdgqIQMLAEYLSAEVggtedqSQAARVSRLIIAGNSLGALTGSAANNSGEserkprrygYDTSSFTPHPTQTLAAHLTDVCRS 210
                  789*******99888899********99999999*99***************99888888887778999***************************** PP

                  SEEEEE--TTBTT-S-SBSB----TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHH....................... CS
  DNA_pol_E_B  81 ttvvlvPgpnDpanstvlPqqPlprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesnt....................... 155
                  ++v l+Pgp+Dpa + +lPqqP+pr+++   +++++ + + tNP+ i+l   ++ +  +  +++l ++s k + +                       
   CDO70693.1 211 MPVHLLPGPSDPAAA-ILPQQPIPRAMFGGASHYAT-FSSETNPTYIKLTPADLSAAPSSRSSQLGASSSKVKVNgnsaakrsdgpsrtilvhsgqpl 306
                  ***************.*****************987.********************************99999999********************* PP

                  ..........HS-HHHHHHHHHHHHTBS---SS.--B-GGGGGGGB-GGG---SEEE---SS--EEE CS
  DNA_pol_E_B 156 ..........dverlrklvktildqrhlaPlap.tlrpvswdkddalvleplPdvlvlpdelpeFak 211
                             ++    l++++l++rhlaP+ap tl++ +++k+d+++l ++Pd++v+++ +p Fa+
   CDO70693.1 307 ddmfkyvptpPIS-RMTLAEATLRWRHLAPTAPdTLWCHPFLKRDPFILTQTPDLYVVGN-QPAFAT 371
                  *******985444.4579******************************************.***985 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   1.2e-21     1e-17      65     129 ..       7      70 ..       1      71 [. 0.89

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.2e-21
  DNA_pol_D_N  65 akedesapqaerkkyvsekdellLEDesgrvrLsgsgieseklvtGvvvavlGvetengdfeVed 129
                  + ++++  +++++ky+s++d+++LEDesgr+ L+g+ i+s+ lvtGv++++lG et+ngdfeV d
   CDO70693.1   7 Q-QRSIPAPPPKEKYYSDNDSVMLEDESGRICLVGDRIRSACLVTGVIMGALGIETHNGDFEVVD 70 
                  3.55566678999**************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2913.74
//
Query:       CDO70694.1  [L=536]
Description: hypothetical protein BN946_scf184798.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-66  224.6   0.0      2e-66  224.2   0.0    1.1  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
    6.7e-07   28.6   0.0    1.3e-06   27.6   0.0    1.4  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2   0.0   2.3e-70     2e-66       9     366 ..      58     390 ..      46     394 .. 0.92

  Alignments for each domain:
  == domain 1  score: 224.2 bits;  conditional E-value: 2.3e-70
                    CSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-E CS
  Pyridoxal_deC   9 deaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegg 104
                    ++a++ + + + ++++  + +la++v+tw+  + ++l++              + i kn ++ +e+P +  l ++++  la+l+++p    ++ + 
     CDO70694.1  58 EAAYQLIHD-ELSLDGSPALNLASFVHTWMPKQADQLMM--------------ENISKNLIDQDEYPMTQVLHTRCVSILADLWHAP--SAHQ-AI 135
                    566677777.999*****************666666666..............9*********************************..4444.88 PP

                    EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEE CS
  Pyridoxal_deC 105 gvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipf 200
                    g+ ++gsse++ l++lA+++ ++++ k++gk+++e      ++++ +++a++++ek+a++++v+ r++p+ e+   +  +++ka+e ++e+  ++ 
     CDO70694.1 136 GTATTGSSEAIQLGGLAMKRIWQEKRKAAGKSIHE----PGPNIVMGANAQVALEKFARYFDVEARLVPISEES-KYRLDPKKAMEYVDEN--TI- 223
                    ******************************99777....78******************************977.55678***********..77. PP

                    EEEEEBS-TTT-BB--HHHHHHHHHH......CT-EEEEE-TTGGGGGGSGGGGG...GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHH CS
  Pyridoxal_deC 201 fvvatlGttvlgaFddlkelgdicek......ydlwlHvDAAyaGsaficpeirh...llkgieradSitvnphKlllvlldcsalivkdkealqq 287
                     v ++lG+t++g ++ +ke++d++++      + +++HvD A++G  f++p+  +   ++++i+r+ Si++++hK++l ++++++++++ k+ l++
     CDO70694.1 224 GVYVILGSTYTGHYEPVKEMADLLDEyeartgHSVPIHVDGASGG--FMAPFATPkleWDFRIPRVVSINASGHKFGLSYVGVGWVVWRSKQFLPK 317
                    9********************************************..*******99**************************************** PP

                    HH-EEECCCT.TTTTTSEECCCGSSSSSG..HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTB CS
  Pyridoxal_deC 288 alqleaeYLehedsdvaadlgtkaiplsr..rvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaeve 366
                     l++e +YL+       ++   + +++sr  +  i++++ ++  lG +g++n+  + +++a+ l   ++k + f + ++ +
     CDO70694.1 318 DLIFELHYLGS------VE-YSFSLNFSRpaHPIIAQYFNFVH-LGFKGYRNVALQDLKNARLLSRALEKSGIFTVLSDIH 390
                    **********3......33.3799*****98899999999999.******************************9999876 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.5e-10   1.3e-06      52     215 ..     122     311 ..     110     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.5e-10
                  HHHHHT-STGGGEEEES..SHHHHHHHHHHHCCCC-TTTSEEEEE.........TTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE..GGGHHHH- CS
  Aminotran_5  52 vaelinaeseeeiifts..Gtteainlvalslarslkpgdeivvt.........eaehhanlvpwqelakrtgakvkvipldeegeld..ldelekll 136
                  +a+l +a+s+++ i t   G++eai+l  l+++r +++++++  +         +++ +a++ + ++ a+   ++ + +p+ ee +++  ++++ +++
   CDO70694.1 122 LADLWHAPSAHQAIGTAttGSSEAIQLGGLAMKRIWQEKRKAAGKsihepgpniVMGANAQV-ALEKFARYFDVEARLVPISEESKYRldPKKAMEYV 218
                  57777888888887654114445777766666666666666654311112222257888888.99999999999988888888776553388999*** PP

                  -TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-E......EEEE-TTTTTTS---HHHHTESE.......EEEETTT.TTSSTT-EEEEEEH CS
  Aminotran_5 137 nektklvaithvsnvtGtiqpveeigklakkkgal......vlvDaaqavghipidvkklgvDf.......lafsghK.llgPtGiGvlyvrk 215
                  +e+t  v++   s+ tG  +pv+e+++l+ +++a       ++vD+a++   +p+ + kl+ Df       + +sghK  l   G+G ++ r+
   CDO70694.1 219 DENTIGVYVILGSTYTGHYEPVKEMADLLDEYEARtghsvpIHVDGASGGFMAPFATPKLEWDFriprvvsINASGHKfGLSYVGVGWVVWRS 311
                  **************************9987776642233338**********************7777666679****889999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3781.94
//
Query:       CDO70695.1  [L=947]
Description: hypothetical protein BN946_scf184798.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-173  579.3   0.0   1.6e-173  579.0   0.0    1.0  1  Hid1      High-temperature-induced dauer-formation protein
    1.7e-91  307.6   0.0    2.3e-91  307.2   0.0    1.0  1  Dymeclin  Dyggve-Melchior-Clausen syndrome protein


Domain annotation for each model (and alignments):
>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  579.0   0.0  1.7e-177  1.6e-173       6     811 ..      25     911 ..      22     912 .. 0.88

  Alignments for each domain:
  == domain 1  score: 579.0 bits;  conditional E-value: 1.7e-177
        Hid1   6 sklafkk...aifrLgekrliaeddayweefWelpesteDvFeLltpadirkvRdenleNletLilavierlvelakhpsfpdp............... 86 
                  klaf+    +i +L + r+i+e+d+ywe++  l +s++DvF+L+t +d+r+   e++eN +tLi+++++rl +l+++  fp p               
  CDO70695.1  25 PKLAFRSqpgGIAKLATTRNISEKDSYWEQYVVLFDSASDVFTLITHNDVRRALYEAPENVATLIRVITSRLFNLVSDHTFPTPpsssvssiassiirt 123
                 58888863446**************************************************************************************** PP

        Hid1  87 ......eqapeseaLnCvRlLtrllPfifE.eesleewedklfWssrk....kpkrkaq.vasevledesssee......................... 148
                       e   ++e+LnC+R+L r+lP +fE e + +  e++++W++ +    +p+   +  a +++e++s + +                         
  CDO70695.1 124 gtgasgERNATKEVLNCIRVLQRVLPAVFEiESEPSRFEQEVLWKRVEvraqEPRADVGgAAGSAVEQASAEPQfviededesddeegrqrspkqtsak 222
                 ***999999999******************7777889999****986611113333444466677777777777************************9 PP

        Hid1 149 ....eeeeekekplaeelldalvdlLFlkdFTvpapk.sskskveysiWesGvgtatklpsnkeiesnRtEvLklLLtlfsetlYrspsevssngskvl 242
                     e+ +e+    ae+l ++l+dl+F+ +F +p+     + k +y+iWe Gvg +t +   +++esn+tEvL+lLL+l+s ++Y +p  + + +s + 
  CDO70695.1 223 akevEKPKETMPSVAERLFNCLIDLMFCCGFALPTKIqVDHYKINYVIWEKGVGSTTDPGPSHQYESNKTEVLRLLLVLLSRQIYAPPAALFTSPSTYT 321
                 998555555556689******************98763678899**********************************************99******* PP

        Hid1 243 tylvssdnrqevltLlcSLlntvcrydpsg.........sglpynsvvlk..dsrellVeyclqlLlvlldypipedeklseevktertsskpkNlfri 330
                 +++v + +r+ vlt+lcSL+nt+++ +  g          +lpyn+++ k  d+r  lV++c+q+L+vlld++  +  ++  e +t+   +++ N fr 
  CDO70695.1 322 LHFVQNLPRRDVLTVLCSLMNTAVNATHPGsanmmgtvaGRLPYNHLLIKgeDTRTSLVSMCFQVLCVLLDFQSGSARDVVVEGQTAAP-TPKTNAFRY 419
                 ************************98877778888999899*****99975589*******************9999999888777777.8999***** PP

        Hid1 331 ylgrlhreqdfqFlldgltriLnqplq..ssylpnsqksvkfaqelliLlwellqcNkrFrsfviessrvldllvlilyylveyrsdqskkglvkicvf 427
                 ++ +lhr+ df+Fll+gl+ i +  ++  +  lp+s+k+v++  e++i+lw+ll+ Nk+Fr +++es++++d++ ++l y ++ ++++++ g+ ++ ++
  CDO70695.1 420 FIMKLHRPADFEFLLNGLVIIFEDEMSslHGLLPGSRKPVPYMVEAVIFLWKLLELNKKFRAYLLESDKAMDVMAYLLCYGLDIKDKPEQHGMCRVLSY 518
                 ***************************88889******************************************************************* PP

        Hid1 428 illllSseknfgkrLnkpfeaqeslptsiripvftgtyaDfliisihkllttgkeklsslvdtLleiLvnispylktLsleacskllqLlesfSspsfL 526
                 +++ lS+e+ fg +L  p +a   +p++      tg   Dfl+ +i+++++t+ ++l+sl+++L+  L+n +py k+Ls++++ +llqL+++fS+psfL
  CDO70695.1 519 MIQGLSAERAFGLKLSGPLKA--HIPQK---WATTGNAGDFLVQAIYSMVATTSGHLNSLYPALVIALSNAAPYFKNLSVTSSARLLQLFNAFSNPSFL 612
                 *********************..***54...56788899************************************************************ PP

        Hid1 527 lanesNhkllalllealnnviqkqfkgnrnLvYsilrkrkvfealrnltlesaseeiersne.................sarldsideeeeenssessr 608
                 l+ e    ll+++lea+n v+ ++ ++n+nLvY+il ++k fe l  +tl ++  ei r ++                 +    ++ +eee        
  CDO70695.1 613 LSDEGHPRLLFFILEAFNGVLLYNLQENPNLVYAILHAHKQFEDLGMFTLARGLREILRIQQlkeervaqgrgsvdkgkR----RALDEEEGGAGIAPS 707
                 *******************************************************9999999999***999998854431....444444444444444 PP

        Hid1 609 ieesrsesrspslsevpelksslaitddeska..ereksatessssqavs......qlremsekarakesaesteesrqesatskkspsgmsqsaeekf 699
                 +e++r  +r++ + + ++ ++s  + ++ ++   ++++++++  s+ a++      ++  +sekar+k+ a+ + +     ++++  +sg   + ++ f
  CDO70695.1 708 SEKARLLQREMGSLDLSRSTDSTDTLPEGAARhgDEDGQTRPLMSPTATEaptgsgAAPPVSEKARGKMRAGRSLSGDMTGSLERLAASG---VGRNGF 803
                 4444444444443333333333322222222100223333334444333355556688889999***99999887777666666666655...699*** PP

        Hid1 700 tptsewlesWksklpLetiltllkallpkiekiase.egltdeseiLkflkdktlvgllpepspikirkfewsalslgWyesllwgviynreenvkklt 797
                 +pt+ew+ sW++ lpL ti+ +++ llpk+++  s+ +g+++++ i+ +l   +l ++lp+p p++ r+f ws+ s  W +sl+wg iy r +     t
  CDO70695.1 804 VPTQEWVASWQQGLPLDTIMLVISELLPKVQSLQSSlSGASASNAIIDLLRTANLDQVLPKPPPLSPRRFMWSDASIVWLTSLIWGEIYIRGM-----T 897
                 ******************************99765538999****************************************************.....9 PP

        Hid1 798 avgvwndtevkLfk 811
                  +g+wn+t v+Lf 
  CDO70695.1 898 PLGIWNNTAVRLFY 911
                 *************6 PP

>> Dymeclin  Dyggve-Melchior-Clausen syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.2   0.0   2.5e-95   2.3e-91      15     626 ..      36     888 ..      26     889 .. 0.90

  Alignments for each domain:
  == domain 1  score: 307.2 bits;  conditional E-value: 2.5e-95
    Dymeclin  15 lqllsktqpidaddafWdqllsfslktptsvqdvfalvepaaeilalrnespgnLatLlrkaveklvelke........scssakeqqt.......... 95 
                 +++l  t++i+++d++W+q          s++dvf+l +++++++    e+p+n+atL+r+++++l +l++        s+s ++  ++          
  CDO70695.1  36 IAKLATTRNISEKDSYWEQYVV----LFDSASDVFTL-ITHNDVRRALYEAPENVATLIRVITSRLFNLVSdhtfptppSSSVSSIASSiirtgtgasg 129
                 6789999**************6....334679*****.99******************************99988777633222222235666777777 PP

    Dymeclin  96 ...alsqalNalrllrrilkyllerasee................................................................eedeee 127
                    a++++lN++r+l+r+l+ ++e +se                                                                 +++ e+
  CDO70695.1 130 ernATKEVLNCIRVLQRVLPAVFEIESEPsrfeqevlwkrvevraqepradvggaagsaveqasaepqfviededesddeegrqrspkqtsakAKEVEK 228
                 8878999***************55544445555555555555555556666666666666666666888888888889999999999999998555566 PP

    Dymeclin 128 seeaep.laeslllalvdllfcpdftvpsk.........................sdstyalrtellklLlvllseqlysppssadssafnklldgkts 200
                  +e+ p +ae+l++ l+dl fc +f +p k                         s+++++++te+l+lLlvlls q+y+pp +  +s + + l++  +
  CDO70695.1 229 PKETMPsVAERLFNCLIDLMFCCGFALPTKiqvdhykinyviwekgvgsttdpgpSHQYESNKTEVLRLLLVLLSRQIYAPPAALFTSPSTYTLHFVQN 327
                 7777778*********************956788999******************999******************************9999****99* PP

    Dymeclin 201 aenrialplvtsLLntviaydpv....desdagsgvpynhllf..sdaaasleplveqslqlLlvlldhdktekavae.ese..staees...Nlfrny 287
                    r +l++++sL+nt ++  ++    +     +++pynhll   +d++     lv+++ q+L+vlld ++ +  +   e +       +   N fr +
  CDO70695.1 328 LPRRDVLTVLCSLMNTAVNATHPgsanMMGTVAGRLPYNHLLIkgEDTR---TSLVSMCFQVLCVLLDFQSGSARDVVvEGQtaAP---TpktNAFRYF 420
                 ******************999998888666667799******99999**...*****************98888755443223222...2556****** PP

    Dymeclin 288 Lsrihreeesdadfkfilkglfrllnntvpseqtylpns..kiqfhqelllllykLlhsNkkfleyvlkrsdvldllvPiLellydaradqsrvgliyi 384
                 + ++hr+     df+f l+gl  ++   ++s +  lp+s   +    e +++l+kLl+ Nkkf++y+l+++ + d+   +L +  d++++++++g+  +
  CDO70695.1 421 IMKLHRPA----DFEFLLNGLVIIFEDEMSSLHGLLPGSrkPVPYMVEAVIFLWKLLELNKKFRAYLLESDKAMDVMAYLLCYGLDIKDKPEQHGMCRV 515
                 ********....****************************8899*************************9999999999999999999999999***** PP

    Dymeclin 385 llfiLLlLSgdrnfgvrlnkliiksvpyservpmdisvftgtlgdLlilvlhrlitynhqrlqDkpLhtcllaiLaNvSpylknLsmvasqkLvsLlel 483
                 l   +  LS +r+fg +l+ +       ++++p +    tg  gd+l+  ++ ++++   +l+   L+  l+ +L+N +py+knLs+ +s +L++L+++
  CDO70695.1 516 LSYMIQGLSAERAFGLKLSGP------LKAHIPQKWA-TTGNAGDFLVQAIYSMVATTSGHLN--SLYPALVIALSNAAPYFKNLSVTSSARLLQLFNA 605
                 *********************......*********9.88***********************..********************************** PP

    Dymeclin 484 lskkwfllsaeakasddlaqelsvneelvrllleilnsiLqyqldgNsnLVYallrkrevfaalanlptdfad.......................... 556
                 +s + flls+e             + +l++++le++n +L y+l++N+nLVYa+l+  + f+ l   +   a+                          
  CDO70695.1 606 FSNPSFLLSDEG------------HPRLLFFILEAFNGVLLYNLQENPNLVYAILHAHKQFEDLGMFTL--ARglreilriqqlkeervaqgrgsvdkg 690
                 ************............**********************************99999998865..445899********************** PP

    Dymeclin 557 ................................................................................................... 556
                                                                                                                    
  CDO70695.1 691 krraldeeeggagiapssekarllqremgsldlsrstdstdtlpegaarhgdedgqtrplmsptateaptgsgaappvsekargkmragrslsgdmtgs 789
                 *************************************************************************************************** PP

    Dymeclin 557 ............................plqnimrvlqvlvpqvekicadkgs.ldeseilkviqkgtlvgllpvphpilirkYqeeegteefFrpYvW 626
                                             pl++im v++ l p+v++++ + +     ++i+++++ + l+ +lp+p+p   r++   + +  + +  +W
  CDO70695.1 790 lerlaasgvgrngfvptqewvaswqqglPLDTIMLVISELLPKVQSLQSSLSGaSASNAIIDLLRTANLDQVLPKPPPLSPRRFMWSDASIVWLTSLIW 888
                 ************************************************9988769999*******************8777777666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6726.28
//
Query:       CDO70696.1  [L=423]
Description: hypothetical protein BN946_scf184798.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0027   17.0   0.0     0.0043   16.3   0.0    1.2  1  Rad51            Rad51
  ------ inclusion threshold ------
      0.089   12.2   0.9       0.32   10.4   0.3    2.2  3  AvrRpt-cleavage  Cleavage site for pathogenic type III effect
        4.3    6.4  11.8        5.6    6.0  11.8    1.1  1  SOG2             RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.2e-07    0.0043     132     223 ..      52     166 ..      35     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.2e-07
                 -EEEEEEETTTGGGCH-----.--THHHHHHHHHHHHHHHHHHHHH--EEEEEEE----...............---.------.......------HH CS
       Rad51 132 kfallivDsvtalyRtdfsgr.gelakRqqklgkllrtLrkladefevavvitnqvvaq...............vdgqaalfsa.......dpkkPigG 207
                   +ll++D+ t  +     +r ++ + R + l  +   L++la ++++avvi     ++                  qa +f+        d++  i+G
  CDO70696.1  52 PAKLLVIDTFTDIFDHVKDERyEDTTLRARDLRSVSLILHRLASKYRLAVVILGGTRETfpridggdrapgelrYSDQARWFARahtvhgeDAHEAILG 150
                 56899******999765555526788999***********************9998888999**********9955557788767888888******** PP

                 HHHHHH-SEEEEEEE- CS
       Rad51 208 lvlahasttRlalrkg 223
                 +v+ ++   R+++ + 
  CDO70696.1 151 HVWPNQLNARIMMSRT 166
                 ***********99764 PP

>> AvrRpt-cleavage  Cleavage site for pathogenic type III effector avirulence factor Avr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.6   9.6e+03       6      12 ..      36      42 ..      35      44 .. 0.64
   2 ?   10.4   0.3   5.3e-05      0.32      22      35 ..      59      72 ..      57      73 .. 0.93
   3 ?   -2.2   0.0      0.45   2.7e+03      23      29 ..     209     215 ..     208     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.6
  AvrRpt-cleavage  6 aVPkFGe 12
                     +VP F +
       CDO70696.1 36 SVPAFAD 42
                     5676654 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5.3e-05
  AvrRpt-cleavage 22 egyTvIFnkvReeK 35
                     + +T+IF+ v++e+
       CDO70696.1 59 DTFTDIFDHVKDER 72
                     68***********9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.45
  AvrRpt-cleavage  23 gyTvIFn 29 
                      +++vIF+
       CDO70696.1 209 RFSVIFS 215
                      69****8 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  11.8   0.00094       5.6     222     348 ..     188     348 ..     154     382 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00094
        SOG2 222 dveqGaalt..plrsd.qipfnl..................................................srsrrssssgnsaspaangaqsetse 267
                 +ve G++    p +s  ++pf+                                                    ++++s+ ++ s++p++ +aq++t+ 
  CDO70696.1 188 KVEGGQQHLptP-TSAeTVPFRRfsvifssagppvscdyvildegvlgipaeeqppstflyptlpsasslpsaPATQSSGFTPRSTAPPSDTAQTQTPR 285
                 455554444233.23335555445555555666666666666666665555555555555555555543332222222333333333333333333333 PP

        SOG2 268 rsasssgvqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastprslattpappasaesfas 348
                         + s  s P++ + + pp++      +t++st+t+t+ + + s s++         +s a++p  p+s++ + s
  CDO70696.1 286 -----YMQSLSYASGPVSRAPSVPPSQ----PFATQSSTNTTTTTDTQASISTT--------ASSYANQPTHPPSTAPL-S 348
                 .....3333344444555555554322....22222233333333333332222........22333333333333332.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2867.58
//
Query:       CDO70697.1  [L=241]
Description: hypothetical protein BN946_scf184798.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.44   10.2   7.7       0.83    9.3   4.5    2.3  2  PAP2_3    PAP2 superfamily
        4.1    7.8   9.0       0.41   11.0   4.2    1.7  2  DUF4199   Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.5   9.2e-05      0.83      44      95 ..      56     110 ..      16     125 .. 0.78
   2 ?    2.4   1.2     0.012   1.1e+02      24      52 ..     107     135 ..     104     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.2e-05
      PAP2_3  44 tllvlvllflrrrerlreflttlllatllgllvyalfPaagPrll...eeagfvd 95 
                 + l++ + ++ +++rl++ +t +l+++l+gl++ ++++   P ll   ++   +d
  CDO70697.1  56 IRLYFYIRYRDTPSRLKHERTFFLCMWLIGLTGTVWISIHSPNLLdafAKLPHPD 110
                 333444445999******************************9986663333333 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.012
      PAP2_3  24 ahpalavilalaYaslhfqvtllvlvllf 52 
                  hp++a i  +++a+l + +t+ +l++ +
  CDO70697.1 107 PHPDVAAIVTITFAWLAWTLTVHLLWISL 135
                 5999999999****999999999998765 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.2   4.6e-05      0.41       5      83 ..      16      90 ..      12      96 .. 0.62
   2 ?   -1.9   0.2      0.42   3.8e+03       6      23 ..     117     135 ..     112     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
     DUF4199  5 ilglvwilifllilyllglh.qi.lstg.pllglla.llllllvpflvylalkkyrkknlgGfisfgqafgfgflislvagll 83
                ++gl ++l+fl   ++l+l+  +  +t  ++lg    +++l+l p+ +y++++ yr++     +   + f +++ ++ ++g +
  CDO70697.1 16 LIGLHIALFFL---FVLSLSmRTgGNTEaIALG--IeVVQLILLPIRLYFYIR-YRDTP--SRLKHERTFFLCMWLIGLTGTV 90
                56777777777...4444443554444423333..347888888*********.***95..6677777777766655444443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.42
     DUF4199   6 lglvwilifll.ilyllgl 23 
                 ++ +w++++l  +l+ ++l
  CDO70697.1 117 ITFAWLAWTLTvHLLWISL 135
                 4567888888766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1718.09
//
Query:       CDO70698.1  [L=132]
Description: hypothetical protein BN946_scf184798.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-52  175.0   0.1    3.9e-52  174.8   0.1    1.1  1  Atg8      Autophagy protein Atg8 ubiquitin like
    6.7e-07   29.6   0.0    9.2e-07   29.2   0.0    1.2  1  APG12     Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> Atg8  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.1   4.4e-56   3.9e-52       1     104 []      27     130 ..      27     130 .. 0.99

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 4.4e-56
                 HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETTE-SSTTSBHHHHHHHH--TTSSEEEEEES CS
        Atg8   1 krkkesekirekypdriPvivekaekeklpeldkkkylvPedltvgqlvliirkrlqlepekalfllvnetlpstsatmsalyeeekdedgflyvvyss 99 
                 krk+e+e+ir+kypdriPvi+eka+k+++p++dkkkylvP+dltvgq+v++irkr++l+peka+f++v+e+lp+t+a msa+yee+kdedgflyv+ys+
  CDO70698.1  27 KRKAEAERIRQKYPDRIPVICEKADKTDIPTIDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDGFLYVSYSG 125
                 79************************************************************************************************* PP

                 SSTB- CS
        Atg8 100 entfG 104
                 entfG
  CDO70698.1 126 ENTFG 130
                 ****9 PP

>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     1e-10   9.2e-07      10      87 .]      53     130 ..      45     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1e-10
                 TTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH-.BTTEEEEEEESSS--- CS
       APG12  10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfg.tdkklvlnYcisvAfG 87 
                 +d+p + kkk+ v +  tv +++  ++k++kl  ++ +f++v++   P+    +  +ye ++  d+ l ++Y+ +  fG
  CDO70698.1  53 TDIPTIDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTA-ALMSAIYEEHKdEDGFLYVSYSGENTFG 130
                 689*****************************************998875.6899*******4555566****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 920.87
//
Query:       CDO70699.1  [L=267]
Description: hypothetical protein BN946_scf184798.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.023   14.8   0.2      0.042   14.0   0.2    1.4  1  DUF4658      Domain of unknown function (DUF4658)
      0.086   12.3   0.0        0.2   11.1   0.0    1.6  1  Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger do


Domain annotation for each model (and alignments):
>> DUF4658  Domain of unknown function (DUF4658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   4.7e-06     0.042      57      92 ..     230     265 ..     211     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-06
     DUF4658  57 aaikapsrprprggsllLrLsvCiLLvvvLglycgr 92 
                 a ++a +++ p +  +lL  ++C+LLv+ L+l c r
  CDO70699.1 230 ALVAALRQTTPPRPPILLDTAICVLLVLLLALICRR 265
                 367778888899999*******************76 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.2e-05       0.2       5      19 ..      69      83 ..      65      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
  Vps36-NZF-N  5 avtatWvCpICsfsN 19
                 a +++WvCp C +sN
   CDO70699.1 69 ALSREWVCPRCKMSN 83
                 56789*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1972.89
//
Query:       CDO70700.1  [L=630]
Description: hypothetical protein BN946_scf184798.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-50  171.3  14.5    2.6e-50  171.3  14.5    2.5  3  PRP21_like_P  Pre-mRNA splicing factor PRP21 like protein
    8.5e-36  121.7   3.1    1.2e-17   63.6   0.1    2.9  3  Surp          Surp module
    2.8e-06   27.0   0.0    6.3e-06   25.8   0.0    1.6  1  ubiquitin     Ubiquitin family
    0.00052   19.5   0.2     0.0011   18.5   0.2    1.6  1  zf_UBZ        Ubiquitin-Binding Zinc Finger
  ------ inclusion threshold ------
      0.017   15.7   0.1      0.017   15.7   0.1    3.1  4  DUF2407       DUF2407 ubiquitin-like domain
       0.53   10.0   2.7       0.34   10.6   0.3    1.8  2  TMEM174       Transmembrane protein 174
        8.2    6.4  17.5        1.7    8.7   0.9    3.3  3  DUF3915       Protein of unknown function (DUF3915)


Domain annotation for each model (and alignments):
>> PRP21_like_P  Pre-mRNA splicing factor PRP21 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.3   8.4e+03      97     116 ..     108     127 ..      88     137 .. 0.54
   2 !  171.3  14.5     1e-53   2.6e-50       9     216 ..     229     467 ..     224     468 .. 0.87
   3 ?   -0.4   1.7      0.34   8.6e+02      23      45 ..     479     501 ..     474     520 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.3
  PRP21_like_P  97 evdeeeeeeseekiekkske 116
                   e+  + +ee+ e+++++  +
    CDO70700.1 108 EEVAPGKEEKPEEKKAEAAP 127
                   44334444444444434444 PP

  == domain 2  score: 171.3 bits;  conditional E-value: 1e-53
  PRP21_like_P   9 leralkraewekqkekeeqkkeeeeeeeklafasiDWqdFvvvetieFdd.deleelpkPltleelkarsleqkskal................... 85 
                   le a+kra+w++ k+++ +k+e+ +e e++afa+iDW+d+++v+tieF++ d  +elp+P++++++++++l+qk++a+                   
    CDO70700.1 229 LEVARKRARWQQLKKEQDKKREDDKEAERIAFAEIDWHDYAIVQTIEFTAaDAAAELPPPMSVQDVESMTLAQKRMAAmimettaeeveavrarqaa 325
                   8899************************************************************************999****************** PP

  PRP21_like_P  86 ............eeaeaetdvemevdeeeeeeseekiekkskesa..vseepalakae...kkmkikadyesrlkkrknskatkekkkakcpitgel 165
                                 ++ ++d+ me +++e +e++e+++ +++e +  ++  +a+++ +     mkik dy+++l+ +  +k t+      c+i+g+ 
    CDO70700.1 326 aeaeaaaavgsaGRQDDQDDTAMEQSDDEDDEAKERKRREEEERQreIERAKAIQASSevgGPMKIKTDYVPKLQRKGVEKLTT------CTICGQQ 416
                   ***********9555555556666555555555555553333333003333333333367899**************9999988......******* PP

  PRP21_like_P 166 iPedeleeHmrieLlDPrykeqkdklvekkskesslltddevaenlkrlak 216
                   iP del+eHmrieLlDP++k q+d l+++k+++s l+ +++v+++lk+la+
    CDO70700.1 417 IPVDELQEHMRIELLDPKWKSQRDALEARKAQASELQRGANVVSSLKNLAR 467
                   *************************************************98 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.34
  PRP21_like_P  23 ekeeqkkeeeeeeeklafasiDW 45 
                   e++++++eeee +++ + +++ W
    CDO70700.1 479 EEKRKREEEEERQRRKEREKVVW 501
                   44444444444444444444444 PP

>> Surp  Surp module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.1   4.8e-21   1.2e-17       2      51 ..      50     100 ..      49     102 .. 0.92
   2 !   58.0   0.1   2.7e-19   6.8e-16       1      53 []     151     202 ..     151     202 .. 0.97
   3 ?   -3.2   0.0       3.4   8.7e+03      16      29 ..     210     223 ..     209     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 4.8e-21
                 HHHHHHHHHHTT..-S.SHHHHHHHH.T--TTSGGGSTT.STTHHHHHHHHH CS
        Surp   2 eiIkktAqfVar..nGkeFeqklrerernnpqFaFLkdpdhpyhayYrwrvd 51 
                 ++I++tAqfVar  n ++Fe+k+re++r++p+FaFL++  +p hayYr+r++
  CDO70700.1  50 SVIDRTAQFVARsaNPPQFEDKIRENQRGDPKFAFLNPA-DPFHAYYRQRME 100
                 79*********977889*******************888.*********986 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 2.7e-19
                 HHHHHHHHHHHTT-S.SHHHHHHHH.T--TTSGGGSTT.STTHHHHHHHHHHH CS
        Surp   1 leiIkktAqfVarnGkeFeqklrerernnpqFaFLkdpdhpyhayYrwrvdey 53 
                 l+i+k+tA f ar G+ F+++l +re +n qF+FLk++ h+++ y++++vd+y
  CDO70700.1 151 LDIMKLTALFTARRGRPFLAALSAREGRNYQFEFLKPT-HSLFGYFNRLVDQY 202
                 689********************************999.*************9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.4
                 .SHHHHHHHH.T-- CS
        Surp  16 keFeqklrerernn 29 
                 ke++++l+er +n 
  CDO70700.1 210 KEMLAQLKERTHNG 223
                 68999999997664 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.5e-09   6.3e-06       6      71 ..     557     625 ..     555     626 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.5e-09
                 TTSEEEEE.EEETTSBHHHHHHHHHHHHT..SSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin   6 ldgkkitl.eveesdtveelKekiaekeg..ipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71 
                 +dg+ +t+ +++ +  v++l ++i +++g  + a+++rL y+Gk L + ++++ ++++d++ ++l +r+
  CDO70700.1 557 FDGSVVTIpDLPLNLLVSTLRDRILQHTGstVGASRIRLAYNGKMLTNMHSIAVHNLEDEDLIVLSVRE 625
                 6899999999******************99999********************************9985 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   4.4e-07    0.0011       4      20 ..     409     425 ..     406     426 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.4e-07
      zf_UBZ   4 lCerCgkeipeselqEH 20 
                 +C  Cg++ip++elqEH
  CDO70700.1 409 TCTICGQQIPVDELQEH 425
                 8**************** PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       2.7   6.8e+03      59      88 ..     210     249 ..     201     259 .. 0.43
   2 ?   -2.2   0.2       2.5   6.3e+03      76      76 ..     351     351 ..     291     379 .. 0.60
   3 ?   -1.4   0.1       1.3   3.4e+03      28      38 ..     461     474 ..     448     512 .. 0.53
   4 ?   15.7   0.1   6.6e-06     0.017      11      69 ..     564     616 ..     558     630 .] 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.7
     DUF2407  59 tslasslklpees..............vsdkaekskekgkapvr 88 
                 +++ ++lk+ +++              +    +++ +k+++++r
  CDO70700.1 210 KEMLAQLKERTHNgarwkdlevarkraR----WQQLKKEQDKKR 249
                 4555555555444555555555432221....222222222222 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
     DUF2407  76 a 76 
                 +
  CDO70700.1 351 S 351
                 1 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
     DUF2407  28 gLkqliRerl...p 38 
                 +Lk+l R+r+    
  CDO70700.1 461 SLKNLARTRVdifG 474
                 34444444432220 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 6.6e-06
     DUF2407  11 ipDleLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpe 69 
                 ipDl+L+        v+ L+  i ++  +++  +r+rL y+G++L++  s+a +  ++e
  CDO70700.1 564 IPDLPLNL------LVSTLRDRILQHTGSTVGASRIRLAYNGKMLTNMHSIAVHNLEDE 616
                 45555554......4999****************************9999987666554 PP

>> TMEM174  Transmembrane protein 174
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1         1   2.6e+03     133     199 ..      10      74 ..       4      84 .. 0.66
   2 ?   10.6   0.3   0.00013      0.34     116     214 ..     269     369 ..     237     383 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
     TMEM174 133 PPpyasqdslglntaglqplssplglkssaaavtasgppqyytiypldnaafvedeessaalavd.se 199
                 PPp a  ++ + n +g++ ++++ +  ++ a+   ++pp+  ++     a fv    ++++++ + +e
  CDO70700.1  10 PPPTAGLNGNAPNGSGADGVQQQPQ--PKYASGLILPPPEIKSVIDR-TAQFVARSANPPQFEDKiRE 74 
                 4555577777777777776666665..78888888899998888765.46677777777766644334 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00013
     TMEM174 116 ginqPitfhgatvvqYiPPpyasqdslglntaglqplssplg.lkssaaavtasgppqyytiypldnaafvedeessaal.avdsenerssesaeelee 212
                  i q i f  a     +PPp ++qd  +++ a  +     +  +  ++ av a  ++   ++ ++  +a  +d++  +a+ + d e+++++e++ ++ee
  CDO70700.1 269 AIVQTIEFTAADAAAELPPPMSVQDVESMTLAQKRMAAMIMEtTAEEVEAVRARQAAAEAEAAAAVGSAGRQDDQDDTAMeQSDDEDDEAKERKRREEE 367
                 58899*********************9999665554444444344555555555555555555444445555554444440444444444444433333 PP

     TMEM174 213 ka 214
                 + 
  CDO70700.1 368 ER 369
                 22 PP

>> DUF3915  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.2      0.13   3.4e+02      22      46 ..     233     257 ..     218     273 .. 0.65
   2 ?    8.7   0.9   0.00065       1.7       3      44 ..     335     377 ..     333     399 .. 0.75
   3 ?    5.9   1.9    0.0045        12      21      41 ..     479     499 ..     469     521 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.13
     DUF3915  22 rdrerererederekerekkkerha 46 
                 r+r r ++ ++e++k+re +ke + 
  CDO70700.1 233 RKRARWQQLKKEQDKKREDDKEAER 257
                 4555555555555555555554433 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00065
     DUF3915   3 gsfgcredfrechrghccdrdre.rererederekerekkker 44 
                 gs g ++d  +    ++ d d e +er+r++e e++re ++ +
  CDO70700.1 335 GSAGRQDDQDDTAMEQSDDEDDEaKERKRREEEERQREIERAK 377
                 8889999999998888877765536777888888888877655 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0045
     DUF3915  21 drdrerererederekerekk 41 
                 + +r+re e+e++r kerek 
  CDO70700.1 479 EEKRKREEEEERQRRKEREKV 499
                 456778888888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2031  (0.11328); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.90u 0.35s 00:00:01.25 Elapsed: 00:00:00.50
# Mc/sec: 3756.69
//
Query:       CDO70701.1  [L=105]
Description: hypothetical protein BN946_scf184798.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-42  144.7   0.2    1.2e-42  144.5   0.2    1.0  1  L31       Mitochondrial ribosomal protein L31


Domain annotation for each model (and alignments):
>> L31  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.2   6.4e-47   1.2e-42       3     102 .]      11     105 .]       9     105 .] 0.98

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 6.4e-47
         L31   3 llgGllwKipwrlsktqkarqrkRlkavDevieavkeslkkkgvslkalekakaelpkesemspkdKYtvFskkskgYRKsihkvpkwtklslrenpkg 101
                  + GllwK+pw+ls+t+ka++r+Rlk vD+vieavkes    gv++ al+ka + lpke+em pkdKYtvFsk+++gYRK+ihkvpkwt+l+lr+npkg
  CDO70701.1  11 SMIGLLWKTPWKLSRTRKANVRSRLKLVDSVIEAVKES----GVQCAALDKALE-LPKEHEMPPKDKYTVFSKHARGYRKGIHKVPKWTRLTLRTNPKG 104
                 677***********************************....***********9.*******************************************9 PP

         L31 102 f 102
                 f
  CDO70701.1 105 F 105
                 9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 755.02
//
Query:       CDO70702.1  [L=296]
Description: hypothetical protein BN946_scf184798.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-82  276.7   0.3    1.8e-82  276.5   0.3    1.0  1  CMS1      U3-containing 90S pre-ribosomal complex subunit


Domain annotation for each model (and alignments):
>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.5   0.3     1e-86   1.8e-82      11     252 .]      50     296 .]      41     296 .] 0.94

  Alignments for each domain:
  == domain 1  score: 276.5 bits;  conditional E-value: 1e-86
        CMS1  11 enkekgkkkksekkRskkkerk.kgklketqDvkaglteavalqdpelLadylaqklkriekDlsdveLeDkyisasaikDttsftkPrtldnlpdy.l 107
                 + + +++ +k++k+R k+kerk k+kl+et+++      ++a q p +Ladyl++ + ++++D+s +eL D +i++sai+Dtt++t+Pr+ld+l+d+ +
  CDO70702.1  50 QAQSAAALEKKRKRRAKEKERKaKRKLAETAEPV--ELPSIAAQPPVMLADYLSSLQAKTFSDMSGIELADMQIPESAIADTTTWTEPRSLDHLVDFiV 146
                 34566777777899***99998579******744..2568999******************************************************88 PP

        CMS1 108 eelsefakklvksaksngsPelLvltlaalRaaDlaralkklq...tkdskvakLFakhikleesvtylkksrigiavGtpgRildLl.eeeslsvdeL 202
                 ++l++++++l++++ksng+P+lL ++ aalR+aD++r l++++   +k++ vakLFakh+klee+v+ylk+++i++avGtpgR+++Ll ++++l    L
  CDO70702.1 147 KVLPKLHTRLSQRPKSNGAPTLLYVAGAALRVADVTRVLRDKRlrgEKGGDVAKLFAKHFKLEEHVAYLKRTKIAAAVGTPGRLGKLLcDTDALATTAL 245
                 9*****************************************999*******************************************9********** PP

        CMS1 203 krivlDasfvDkknrgildiretrkevik.lLgakevkerleekkvkvvfy 252
                 ++i+lD+s++D k+r++ldi+etr+ev+  +Lga++v++ l+++  ++v++
  CDO70702.1 246 THIILDVSYRDAKQRTLLDIPETRNEVFRtVLGAPKVLNGLRQGTIQLVLF 296
                 ****************************99****************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2193.83
//
Query:       CDO70703.1  [L=411]
Description: hypothetical protein BN946_scf184798.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-12   47.8   0.0    9.4e-05   23.0   0.0    3.8  4  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.12   2.1e+03      45      82 ..      46      83 ..      27      89 .. 0.78
   2 !   23.0   0.0   5.2e-09   9.4e-05       1      61 [.      93     165 ..      93     177 .. 0.94
   3 !   12.4   0.0   9.3e-06      0.17      61     112 ..     207     263 ..     203     289 .. 0.80
   4 !    7.3   0.0   0.00036       6.4     135     164 ..     343     373 ..     308     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.12
                SHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHH CS
     RNase_T 45 elakltdecteftgitqemldeapsfkevleefkellr 82
                   +l++ + ++t  t++ l +    + + e+ +++l+
  CDO70703.1 46 TATQLPPSASKHTPTTPASLSDTTHQDPAHERDQDMLQ 83
                44579999999999999999999888888877777776 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 5.2e-09
                 EEEEEEESSSTT...CTTS-EEEEEEEEEETTCC.........EEEEEEEEEEEHSSHCSSSHHHHHHHHHCH CS
     RNase_T   1 vviDlEttglda...kekdeiieiaaisidggen.........eigetfhfyvkptelakltdecteftgitq 61 
                 +v+D+E+t++     + ++eiie + + ++ ++          e  ++f ++v+pt  +kl+ +ct +tgitq
  CDO70703.1  93 LVLDVEATCVAGagfDYPNEIIEWPVVLLRWKDKdikgkarqlEAVDEFRSFVRPTWRPKLSQFCTTLTGITQ 165
                 69**********9**88**********9999888999******99999***********************98 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 9.3e-06
                 HHHHHTCEBHHHHHHHHHHHHHHHTCCCETT.T....CEEEESSHHHHHHHHHHHHH CS
     RNase_T  61 qemldeapsfkevleefkellrklallvahn.a....afdvgflraadkrilkkevp 112
                 q+++d apsf+evl +f+ +l+k +l+ +   +    + +++++ ++++ ++ k++ 
  CDO70703.1 207 QDQVDSAPSFPEVLHQFRTFLEKHRLIDPESgRrltrFCFCTDGPYDIRDFVVKQCF 263
                 899********************9999886544122256899999999998888875 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.00036
                 HHHHHHHHTTCH.SSSSTSSHHHHHHHHHHH CS
     RNase_T 135 sldklaeklgle.edgraHrAldDaeatakl 164
                 s++  ++ lgle + gr+H+++dD++++a+l
  CDO70703.1 343 SIPRQLHALGLEpFEGRQHSGIDDTRNIARL 373
                 556666666665255669**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2977.38
//
Query:       CDO70704.1  [L=502]
Description: hypothetical protein BN946_scf184798.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3630.14
//
Query:       CDO70705.1  [L=550]
Description: hypothetical protein BN946_scf184798.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-30  105.9   0.0    3.6e-30  104.6   0.0    1.6  1  Ndc80_HEC       HEC/Ndc80p family
    8.1e-05   22.6   3.7    8.1e-05   22.6   3.7    4.1  5  DUF5595         Domain of unknown function (DUF5595)
     0.0099   16.3   3.0        1.7    9.1   0.7    3.0  2  DUF2710         Protein of unknown function (DUF2710)
  ------ inclusion threshold ------
       0.26   11.4  22.4       0.17   12.0   3.7    4.0  4  Fib_alpha       Fibrinogen alpha/beta chain family
       0.55   10.9  24.7       0.51   11.0   4.3    4.3  4  YabA            Initiation control protein YabA
       0.77    8.3  19.4       0.91    8.1  10.5    2.7  2  FapA            Flagellar Assembly Protein A
          1    9.5   3.3         11    6.2   0.0    3.5  3  YojJ            Bacterial membrane-spanning protein N-terminu
        2.3    8.5  10.2         18    5.7   2.6    3.6  2  DUF2935         Domain of unknown function (DUF2935)
        3.1    6.8  17.8        1.6    7.8   3.4    3.2  3  Effector_1      Effector from type III secretion system
        7.2    7.1  13.6         43    4.7   0.0    5.0  5  NPV_P10         Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0     2e-33   3.6e-30      17     148 ..       9     140 ..       3     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 2e-33
   Ndc80_HEC  17 sesekaasverDprplrdksfqseliqellefLkennfehsisaktlksPsqkdfssifkfLykrldpsyefq..kkieeevvkilkelrYPfaesisK 113
                 s  +++++  +D rplrd+sfq+++ q + +fL ++++  ++ +++l++ + kdf  +f++L+  ldp ++f+  +++ee+ ++ l++++YP+  +i  
  CDO70705.1   9 SVPPSSQTFAKDTRPLRDRSFQAKMRQDIATFLISTGY--EVAPQMLQNITGKDFRAVFQHLIVYLDPLWPFRpeQRFEEQFMQALRAMKYPYVGQIDI 105
                 4456777899***************************6..699*****************************888************************ PP

   Ndc80_HEC 114 sqlaAvgtphtwptllaaLhWlvelaklleelses 148
                   l ++ + h+wp ll+aLhWlvel ++ e++ +s
  CDO70705.1 106 KWLPTPAAMHSWPALLGALHWLVELGRAREHYMDS 140
                 ***************************99999876 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   3.7   4.5e-08   8.1e-05       4      72 ..     156     224 ..     153     225 .. 0.92
   2 ?    1.5   0.4      0.18   3.2e+02      50      65 ..     275     290 ..     252     296 .. 0.80
   3 ?    1.6   1.6      0.16     3e+02      44      71 ..     293     320 ..     282     322 .. 0.79
   4 ?   -2.9   0.1       4.1   7.4e+03      52      70 ..     411     429 ..     397     439 .. 0.55
   5 ?   -2.9   0.3       4.3   7.7e+03      33      72 ..     438     477 ..     431     478 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.5e-08
     DUF5595   4 edgievnkLFldYtvkcYekFmqgeDtFeeedaeleskLkelynvdeaqlesleeeekrLeeEierlek 72 
                 +d   +  L +d  + +Ye F+qg+D F+ee++ le +  ++ +   ++le+l e  k  + E e+l+k
  CDO70705.1 156 DDIHHHLALAFDHNSRAYEVFLQGQDVFPEEEKMLEERYAKKDARVFTDLEQLRERLKEIQAEWEQLKK 224
                 55556778999******************************************************9998 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.18
     DUF5595  50 eaqlesleeeekrLee 65 
                  a+le++++ee+rL++
  CDO70705.1 275 LANLEKMHAEEQRLSD 290
                 5789999999999975 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.16
     DUF5595  44 elynvdeaqlesleeeekrLeeEierle 71 
                 ++ n   +++ +++ e++ L+ E+e+l+
  CDO70705.1 293 KVQNLSPEEVLRMNTEHESLTRELESLK 320
                 555667788999*************986 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.1
     DUF5595  52 qlesleeeekrLeeEierl 70 
                   ++ e e+ r  +++++l
  CDO70705.1 411 AHAEVESERIRVDDDLDQL 429
                 4455555555555555444 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 4.3
     DUF5595  33 eedaeleskLkelynvdeaqlesleeeekrLeeEierlek 72 
                 ee  e+ +k + l  + ++  e+ ++e  + + E +rle+
  CDO70705.1 438 EEVLEVMNKTNALSDQADELREAAQQEALVSNAEASRLER 477
                 4445555555555555566666666666666777777775 PP

>> DUF2710  Protein of unknown function (DUF2710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.011        21      13      53 ..     241     280 ..     233     300 .. 0.74
   2 !    9.1   0.7   0.00092       1.7      24      66 ..     456     497 ..     442     515 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
     DUF2710  13 sdkdlvesvlrdlseaaekwealvaeaetvtysvdlgdvra 53 
                  dk   e +lr ++e  +kw  lv + e++    +l ++  
  CDO70705.1 241 RDKLKFEEILRRFEERKQKWTRLVQD-EKTELEYNLANLEK 280
                 5777889****************965.55555555655555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00092
     DUF2710  24 dlseaaekwealvaeaetvtysvdlgdvravansdgrlleltl 66 
                 +l+eaa++ ealv++ae+     dl   r+ a ++g  ++  l
  CDO70705.1 456 ELREAAQQ-EALVSNAEASRLERDLAAARTAAMANGVGVKSRL 497
                 69999975.********************99988886555554 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.029        52      78     123 ..     182     224 ..     168     230 .. 0.71
   2 ?    2.2   4.0       0.1   1.8e+02      28     123 ..     196     290 ..     189     306 .. 0.73
   3 ?    6.0   0.6    0.0068        12      34      80 ..     306     353 ..     294     358 .. 0.83
   4 ?   12.0   3.7   9.7e-05      0.17      32     125 ..     421     518 ..     412     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  78 vikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeq 123
                 v+ + +k+lee++++ ++++   ++ +++L++ l++ + + ++L++
  CDO70705.1 182 VFPEEEKMLEERYAKKDARV---FTDLEQLRERLKEIQAEWEQLKK 224
                 55666788886666666666...55667777777777777777776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.1
                 CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeq 123
                 k++  v +dle+l+++l+ei+ + ++ ++     ++  +++ +  +  +  ++++ ++ ee+ ++  + ++++ +++++   +le+ + + q+L  
  CDO70705.1 196 KKDARVFTDLEQLRERLKEIQAEWEQLKKSAPPFEELKKDNGSLRR-DKLKFEEILRRFEERKQKWTRLVQDEKTELEYNLANLEKMHAEEQRLSD 290
                 6677788888999999999998888888888888777666666666.4777888888888888888888887777777666666666666666655 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0068
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvik 80 
                 +++ e+l++ele+++++  e++++v++++ sl++k + +++  d++++
  CDO70705.1 306 NTEHESLTRELESLKHKIAETSQVVVRLEVSLTRKVSDAEEAlDQYTT 353
                 6667899*************************9999988876565554 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 9.7e-05
                 CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC...H.HHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  32 dvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaq...e.snirvLqnvlesneqkiqkLeqdi 125
                  v++dl++l+ e e+i+++  e+ + +++++d+  e  + ++++  v +  +++le++ +  +    a+   + s++++Lq  ++++++k+++L++d 
  CDO70705.1 421 RVDDDLDQLNLECETIEEEVLEVMNKTNALSDQADELREAAQQEALVSNAEASRLERDLAAARTAAMANgvgVkSRLQALQIAYREQVEKVNRLKEDT 518
                 689999999999999999999999999999999999888888777777777888888887776665554333359********************986 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.3   0.00028      0.51       5      76 ..     200     281 ..     196     286 .. 0.72
   2 ?    0.8   4.3      0.42   7.5e+02       9      36 ..     301     328 ..     267     354 .. 0.57
   3 ?    6.7   2.2     0.006        11      11      60 ..     420     469 ..     407     484 .. 0.81
   4 ?    1.0   0.1      0.37   6.6e+02       8      39 ..     495     526 ..     489     546 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHH.......XXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkee...laelleenaeLeleneklrerl.......eeeekkekekkkelsegkenLarl 76 
                  +f+ le+l e+l+e+++e e+lk++   ++el ++n +L+ ++ k+ e l       ++ ++  +++k+el+    nL+++
  CDO70705.1 200 RVFTDLEQLRERLKEIQAEWEQLKKSappFEELKKDNGSLRRDKLKFEEILrrfeerkQKWTRLVQDEKTELEYNLANLEKM 281
                 5899********************983335899999*******999999996655443333333445555555555566555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   9 kleeleeqleelleeleelkeelaelle 36 
                 ++ +++++ e+l++ele+lk+++ae+ +
  CDO70705.1 301 EVLRMNTEHESLTRELESLKHKIAETSQ 328
                 3334444444444444444444444433 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.006
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
        YabA  11 eeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkek 60 
                  +++++l++l+ e e+++ee+ e++++ ++L+ + ++lre  ++e   ++
  CDO70705.1 420 IRVDDDLDQLNLECETIEEEVLEVMNKTNALSDQADELREAAQQEALVSN 469
                 56788999********************************9965544443 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   8 dkleeleeqleelleeleelkeelaelleena 39 
                 ++l++l+   +e +e++++lke++++ + +n+
  CDO70705.1 495 SRLQALQIAYREQVEKVNRLKEDTVRAVIKNS 526
                 67888889999999999999999888877775 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.5   0.00051      0.91     337     439 ..     203     313 ..     190     326 .. 0.71
   2 ?    4.2   1.5    0.0074        13     319     433 ..     406     513 ..     374     536 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00051
        FapA 337 eklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk.elkeelesk.......keea.kikvnkeiypg 426
                   l++l+e+l+e+++e e+lkk+   +++lk+++    + k +++++l+  e+ k++++ l ++ k el+ +l++        ++ + ++kv++ + p+
  CDO70705.1 203 TDLEQLRERLKEIQAEWEQLKKSAPPFEELKKDNGSLRRDKLKFEEILRRFEERKQKWTRLVQDEKtELEYNLANLekmhaeeQRLSdIVKVQN-LSPE 300
                 5679*******************66666666688888888899999999999999999988877777888888888444544422232333333.4455 PP

        FapA 427 vkikigkkkliik 439
                  +++++++++ ++
  CDO70705.1 301 EVLRMNTEHESLT 313
                 5555555555444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0074
        FapA 319 elgtkteievgldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk.elkeeleskkeea. 415
                 e+    + ev+ ++  +++ l++l+ e e +eee+ ++ +k + l++         +  e  + ++++    + e + le++l+ +  + ++++ + + 
  CDO70705.1 406 EMKRTAHAEVESERIRVDDDLDQLNLECETIEEEVLEVMNKTNALSD---------QADELREAAQQEALVSNAEASRLERDLAaARTAAMANGVGVKs 495
                 34444444454444555555555555555555555555555555555.........2334444444444444444444444444444444444444444 PP

        FapA 416 kikvnkeiypgvkikigk 433
                 ++++ + +y + + k+++
  CDO70705.1 496 RLQALQIAYREQVEKVNR 513
                 566666555554444444 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.9   8.9e+03      42      51 ..     154     163 ..     154     165 .. 0.84
   2 ?    6.2   0.0    0.0063        11      34      55 ..     196     217 ..     186     219 .. 0.88
   3 ?    1.6   0.1      0.16   2.9e+02      31      53 ..     304     326 ..     285     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
        YojJ  42 elesirekfa 51 
                 e+++i++ +a
  CDO70705.1 154 EFDDIHHHLA 163
                 79****9875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0063
        YojJ  34 eedeClLcelesirekfaelet 55 
                 ++d ++ ++le++re ++e+++
  CDO70705.1 196 KKDARVFTDLEQLRERLKEIQA 217
                 7899***************997 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.16
        YojJ  31 aldeedeClLcelesirekfael 53 
                  ++ e e l  eles+++k+ae 
  CDO70705.1 304 RMNTEHESLTRELESLKHKIAET 326
                 58999999999*******99886 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.6    0.0099        18      39      93 ..     274     327 ..     184     332 .. 0.75
   2 ?    4.2   0.8      0.03        53      34      86 ..     495     547 ..     424     549 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0099
     DUF2935  39 fkkeFekllaeavelseglvrasseleeavakLneealkltreliqFkkellekv 93 
                    ++ek+ ae ++ls+ + ++++ ++e+v ++n+e  +ltrel ++k+++ e +
  CDO70705.1 274 NLANLEKMHAEEQRLSDIV-KVQNLSPEEVLRMNTEHESLTRELESLKHKIAETS 327
                 3345566666666676666.*****************************998865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.03
     DUF2935  34 keakefkkeFekllaeavelseglvrasseleeavakLneealkltreliqFk 86 
                  ++++++ ++ ++ +++++l+e +vra  ++  ++ ++ +e+ k+++ l++F+
  CDO70705.1 495 SRLQALQIAYREQVEKVNRLKEDTVRAVIKNSSDIVAFKDEVSKQLQYLRDFA 547
                 44555566667777777777777778888888888888888888888888886 PP

>> Effector_1  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.025        44     175     216 ..     178     219 ..     169     229 .. 0.86
   2 ?    7.8   3.4   0.00089       1.6     179     277 ..     252     349 ..     247     357 .. 0.88
   3 ?    3.9   2.5     0.013        24     183     239 ..     407     463 ..     401     524 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.025
  Effector_1 175 mgeneFagsieeakdklakEkeqvrkdlksaekAkekvkell 216
                 +g++ F+++ ++ ++++ak   +v  dl++ ++  + +++  
  CDO70705.1 178 QGQDVFPEEEKMLEERYAKKDARVFTDLEQLRERLKEIQAEW 219
                 589*************************99888877777655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00089
  Effector_1 179 eFagsieeakdklakEkeqvrkdlksaekAkekvkellkrveadkkltteqkaklkdelngYadeleaiveqLaelkvllrklsvsvvegddeydeaft 277
                  F + +++    ++ Ek  ++  l + ek ++  +  l+ +   ++l+ e+  ++++e ++ + ele + +++ae + ++  l+vs   ++ + +ea +
  CDO70705.1 252 RFEERKQKWTRLVQDEKTELEYNLANLEKMHAEEQR-LSDIVKVQNLSPEEVLRMNTEHESLTRELESLKHKIAETSQVVVRLEVSLTRKVSDAEEALD 349
                 5889999999999*************9998877555.555666778*******************************************9999998865 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.013
  Effector_1 183 sieeakdklakEkeqvrkdlksaekAkekvkellkrveadkkltteqkaklkdelng 239
                  + +a+++++ E+ +v+ dl + +   e+++e + +v ++++  ++q+ +l++++++
  CDO70705.1 407 MKRTAHAEVESERIRVDDDLDQLNLECETIEEEVLEVMNKTNALSDQADELREAAQQ 463
                 5778999**********************************9999********9987 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.024        43      11      42 ..     203     234 ..     199     242 .. 0.89
   2 ?   -0.6   0.1       1.1   1.9e+03      23      54 ..     264     291 ..     247     303 .. 0.65
   3 ?    2.1   0.3      0.15   2.7e+02      22      65 ..     311     355 ..     293     366 .. 0.51
   4 ?    4.2   0.4     0.033        59       9      34 ..     436     461 ..     393     475 .. 0.67
   5 ?    0.9   0.3      0.35   6.2e+02      18      53 ..     509     545 ..     496     549 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.024
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvtelne 42 
                 +d +++ ++++ +q++ +++++  p ++el++
  CDO70705.1 203 TDLEQLRERLKEIQAEWEQLKKSAPPFEELKK 234
                 7899999*********************9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
     NPV_P10  23 lqqqvddvqenlpdvtelnekLdaqsaqLael 54 
                 +q++ ++++ nl +++    k+ a  + L ++
  CDO70705.1 264 VQDEKTELEYNLANLE----KMHAEEQRLSDI 291
                 5777788888888855....444444444443 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.15
     NPV_P10  22 alqqqvddvqenlpdvtelnekLd.aqsaqLaeletkvenIqdiL 65 
                 +l  +++++++++ +++++  +L+ +++ ++ + e+++++ + +L
  CDO70705.1 311 SLTRELESLKHKIAETSQVVVRLEvSLTRKVSDAEEALDQYTTLL 355
                 444444444444444444444444334444444444444444444 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.033
     NPV_P10   9 IradikavddkVdalqqqvddvqenl 34 
                 I +++ +v +k +al++q d+++e  
  CDO70705.1 436 IEEEVLEVMNKTNALSDQADELREAA 461
                 34444444444444444444444444 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.35
     NPV_P10  18 dkVdalq.qqvddvqenlpdvtelnekLdaqsaqLae 53 
                 +kV+ l+ + v  v +n+ d+   ++++ +q + L +
  CDO70705.1 509 EKVNRLKeDTVRAVIKNSSDIVAFKDEVSKQLQYLRD 545
                 5777775256888889999988777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1576  (0.0879023); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 3630.89
//
Query:       CDO70706.1  [L=177]
Description: hypothetical protein BN946_scf184798.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-41  139.6   0.1    9.8e-41  139.3   0.1    1.0  1  Mog1      Ran-interacting Mog1 protein


Domain annotation for each model (and alignments):
>> Mog1  Ran-interacting Mog1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.1   5.5e-45   9.8e-41       2     138 .]       6     140 ..       5     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 5.5e-45
                 E-TTTSSEEE--TT-EEGGGTS---TTEEEEEETTTTEEEEEE--B--TT--THHHHHHHHHHHTTTSS--.--EEEEEEE--SS----SEEEEEEEE- CS
        Mog1   2 eLyGGaitvelPkgflDvSklRqvPDnQEVfvdkssdesiIvellerveeksdeealklhledlaeendaseeseveevekleakkeeetsailligtq 100
                 eL+GGait++lP+++lD+S++RqvPD+QEV+++++s  siIve+l++v++ + +ea++ h++ la++nda+++   e+++  +++++++++ ++l gtq
  CDO70706.1   6 ELFGGAITATLPTTLLDASDFRQVPDTQEVYLSPTSGVSIIVEVLQSVSARDLREAAAQHFDALAHDNDAKSQVVNETLDMPNDANGTTPNPVVLYGTQ 104
                 8*********************************************************************976566666666688999999******** PP

                 B---TTS--..--B-EEEEEEEEETTTTEEEEEEEEE- CS
        Mog1 101 kvakfnkeeekeetvaillaliRlkevetDvlitvnvP 138
                 +v+kfn+++  +++v+illal+R++e+++D+++t+nvP
  CDO70706.1 105 TVQKFNSSS--ADEVRILLALYRVPEKNVDLVMTMNVP 140
                 *****9988..789***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 1183.41
//
Query:       CDO70707.1  [L=337]
Description: hypothetical protein BN946_scf184798.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.009   16.2   0.1      0.009   16.2   0.1    2.7  3  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
  ------ inclusion threshold ------
      0.029   15.0   1.6      0.029   15.0   1.6    2.2  2  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
      0.066   13.3  17.4       0.05   13.7   3.9    2.3  2  DivIVA           DivIVA protein
      0.069   13.3  11.9       0.33   11.1   1.6    2.5  2  bZIP_1           bZIP transcription factor
       0.16   12.2  12.5       0.31   11.3   2.0    2.5  2  JIP_LZII         JNK-interacting protein  leucine zipper II
       0.17   12.4   5.2        3.8    8.0   0.8    2.4  2  DUF16            Protein of unknown function DUF16
       0.32   11.2  15.4        1.3    9.3   3.7    2.5  2  Cnn_1N           Centrosomin N-terminal motif 1
       0.37   10.7   3.5        1.5    8.7   0.3    2.2  2  MOSC_N           MOSC N-terminal beta barrel domain
        0.4   10.8   8.0        4.6    7.4   0.4    2.4  2  TolA_bind_tri    TolA binding protein trimerisation
       0.55   10.3   6.8       0.21   11.6   0.9    2.3  2  APC_N_CC         Coiled-coil N-terminus of APC, dimerisation 
       0.73    9.5  12.2        2.1    8.0   2.2    2.2  2  SHE3             SWI5-dependent HO expression protein 3
       0.76    9.6  22.6        1.9    8.2   9.1    2.1  2  ERM              Ezrin/radixin/moesin family
       0.87   10.3  10.0        5.7    7.6   1.5    2.3  2  YabA             Initiation control protein YabA
        1.1    9.2   3.9        1.1    9.2   2.1    1.9  1  WD40_alt         Alternative WD40 repeat motif
        1.2    8.4  17.4       0.47    9.8   4.5    2.1  2  GAS              Growth-arrest specific micro-tubule binding
        1.2    8.8  11.7       0.74    9.6   1.9    2.2  2  DASH_Spc34       DASH complex subunit Spc34
        1.4    8.2  12.9       0.71    9.1   3.1    2.2  2  DUF3450          Protein of unknown function (DUF3450)
        2.5    8.5   8.8        7.6    6.9   0.7    2.7  2  CCDC-167         Coiled-coil domain-containing protein 167
        3.4    7.5  17.0       0.12   12.3   1.2    2.3  2  eIF3_subunit     Translation initiation factor eIF3 subunit
        3.7    6.1   8.8        4.4    5.8   3.1    2.0  2  Peptidase_S46    Peptidase S46
        4.2    7.0  15.6          2    8.0   3.3    2.2  2  GrpE             GrpE
        4.5    7.8  11.5        2.4    8.7   0.6    2.6  2  Cep57_MT_bd      Centrosome microtubule-binding domain of Cep
        6.3    6.9  14.9        1.3    9.1   3.8    2.3  2  ADIP             Afadin- and alpha -actinin-Binding
        6.5    7.1  14.9       0.14   12.5   2.0    3.5  3  Mto2_bdg         Micro-tubular organiser Mto1 C-term Mto2-bin


Domain annotation for each model (and alignments):
>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.5   4.1e+03     101     136 ..      22      55 ..      13      62 .. 0.43
   2 !   16.2   0.1   1.2e-05     0.009      47      94 ..     141     187 ..     101     211 .. 0.81
   3 ?    2.7   7.1      0.18   1.3e+02      39     104 ..     237     301 ..     228     323 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.5
      CENP-Q 101 elslleassdevlgeasgtvfsdlepeldeellpll 136
                 ++s  ++s +  +g+ +++++s++ + +d+  ++++
  CDO70707.1  22 PQSATSSSRN--AGRTRDGNSSSDTDFEDPISRKIS 55 
                 2333333333..333333333333333366555555 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.2e-05
      CENP-Q  47 slelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvll 94 
                 s++ L++e   ++++ler +e+L+++e   ka ++++++ l+ +  ++
  CDO70707.1 141 SMASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQ-LRDSIMIA 187
                 6899***********************999998877665.33333333 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.18
      CENP-Q  39 aqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelsl 104
                 + ++ +++ +  L+ e ek++++  r  e  ++L+++ak++++     ++++ v+ ++ ++e++ +
  CDO70707.1 237 RRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAKA-AAESTDVVSERIEEEPEAE 301
                 4555555666666666666666666666666666666665543322.2223333333333333333 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.6   3.9e-05     0.029      31      93 ..     126     188 ..     115     193 .. 0.85
   2 ?    1.8   5.3       0.5   3.8e+02      18      74 ..     228     287 ..     226     305 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.9e-05
  HIP1_clath_bdg  31 eleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93 
                     ++++++  + ++++  ++  kee  +Lk+ele+++++la+++ +L+ ++++++ql  +++  +
      CDO70707.1 126 DMADSFCLIPAKTDPSMASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLRDSIMIAR 188
                     6677777777778888888999999******************************99887555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.5
  HIP1_clath_bdg  18 arqaqeeverekkeleeelerlkeeaerkle...eqkeelekLkreleakraelarlkss 74 
                     +r+   ++ r  +eleee++ l+ e+e++ +     +e  ekLk+  ++k++  a ++s+
      CDO70707.1 228 TRERDPQLVRRVRELEEEIRVLRVENEKQKAmivRFRERWEKLKESAKRKKEAKAAAEST 287
                     566677888999999999999888877776656677888999998777766655555555 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.9   6.7e-05      0.05      32      79 ..     147     194 ..     138     201 .. 0.86
   2 ?    5.1   5.7     0.029        22      43     108 ..     234     301 ..     228     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  32 kdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetaeev 79 
                 ++  +l  e e++ke+++++e +lk  +e++++L+++++ a + a+++
  CDO70707.1 147 EENATLKAELERQKEQLAKMEIALKARQEQDQQLRDSIMIARKEAHRA 194
                 5666788899999999999999999******************99976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.029
                 HHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  43 elkekvkeleeklkeykeleetLkktlvvaqetaeevkanakk..eaeliikeAekkaekiveeaeee 108
                 +l ++v+elee++   +  +e+ k ++v   e  e++k++ak+  ea+   + ++  +e+i ee e e
  CDO70707.1 234 QLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRkkEAKAAAESTDVVSERIEEEPEAE 301
                 6788999999999999999999777788889999******9861155666666666666666544444 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   0.00044      0.33      36      60 ..     143     167 ..     140     171 .. 0.90
   2 ?    6.9   3.0     0.009       6.7      27      62 ..     238     273 ..     234     281 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00044
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  36 kaLekeNksLkseleelkkevekLk 60 
                 + L++eN++Lk ele+ k++ +k++
  CDO70707.1 143 ASLKEENATLKAELERQKEQLAKME 167
                 78********************996 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.009
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  27 eieeLerrvkaLekeNksLkseleelkkevekLksk 62 
                 ++ eLe++  +L  eN++ k  + + ++  ekLk+ 
  CDO70707.1 238 RVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKES 273
                 6789**************999999999999999975 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.1     0.024        18      38      64 ..     145     171 ..     141     178 .. 0.67
   2 ?   11.3   2.0   0.00041      0.31      30      69 ..     234     273 ..     232     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.024
    JIP_LZII  38 LtsereiLreEleslqkakerlesrik 64 
                 L++e+ +L+ Ele+ +++++++e  +k
  CDO70707.1 145 LKEENATLKAELERQKEQLAKMEIALK 171
                 666777777777777777777766655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00041
    JIP_LZII  30 dLIarvdeLtsereiLreEleslqkakerlesrikelEee 69 
                  L+ rv eL +e  +Lr E+e+ +++  r ++r ++l e 
  CDO70707.1 234 QLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKES 273
                 5999*****************************9999876 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2      0.02        15      43      81 ..     142     180 ..     120     195 .. 0.77
   2 ?    8.0   0.8    0.0051       3.8      52      88 ..     234     270 ..     227     297 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                 HH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
       DUF16  43 vdklgeqinkleqkvekqgekikelkveqkaqgeelnkv 81 
                 +++l+e+ + l+ + e+q e++ +++   ka++e+ +++
  CDO70707.1 142 MASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQL 180
                 556777788888889999999999999888887765443 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHH CS
       DUF16  52 kleqkvekqgekikelkveqkaqgeelnkvdetleli 88 
                 +l   v++++e+i+ l+ve ++q++ + +  e  e +
  CDO70707.1 234 QLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKL 270
                 5667777788888888888888777666444443333 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.9    0.0082       6.1      47      70 ..     144     167 ..     136     190 .. 0.85
   2 ?    9.3   3.7    0.0017       1.3       2      39 ..     239     287 ..     239     306 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0082
      Cnn_1N  47 elkveveslqkelkekkkllreae 70 
                  lk+e+++l+ el++ k++l ++e
  CDO70707.1 144 SLKEENATLKAELERQKEQLAKME 167
                 688888888888888888888877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0017
      Cnn_1N   2 lrEqeeqidkLkKENFdLKLriyfLeerleklse...........eqke 39 
                 +rE+ee+i  L+ EN   K  i   +er ekl+e            +++
  CDO70707.1 239 VRELEEEIRVLRVENEKQKAMIVRFRERWEKLKEsakrkkeakaaAEST 287
                 69********************************876644333333333 PP

>> MOSC_N  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.16   1.2e+02      49      92 ..     136     179 ..     130     196 .. 0.74
   2 ?    8.7   0.3     0.002       1.5      48     104 ..     228     284 ..     226     299 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.16
      MOSC_N  49 qrrePrlalirteldeedglLtltapgrkdlevslakakaslee 92 
                 +++ P +a ++ e ++ +  L+ + ++  ++e+ l+++++++++
  CDO70707.1 136 AKTDPSMASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQ 179
                 78999999999999988999999999888999988843333332 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.002
      MOSC_N  48 tqrrePrlalirteldeedglLtltapgrkdlevslakakasleevsvlelsasgld 104
                 t  r P+l++   el+ee  +L+++ + +k++ v+++++ ++l+e+   + +a++ +
  CDO70707.1 228 TRERDPQLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAKAAA 284
                 66799********************************55555554444444433333 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.9     0.011       8.3      27      52 ..     142     167 ..     140     184 .. 0.84
   2 ?    7.4   0.4    0.0062       4.6      22      54 ..     234     266 ..     229     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
  TolA_bind_tri  27 lealqqelreLRGqiEelqyqleqle 52 
                    + +l++e ++L+ ++E+++ ql ++e
     CDO70707.1 142 MASLKEENATLKAELERQKEQLAKME 167
                    6789******************9997 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0062
  TolA_bind_tri  22 elqqqlealqqelreLRGqiEelqyqleqleer 54 
                    +l +++ +l++e+r LR ++E+++  + + +er
     CDO70707.1 234 QLVRRVRELEEEIRVLRVENEKQKAMIVRFRER 266
                    8999******************99887777777 PP

>> APC_N_CC  Coiled-coil N-terminus of APC, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   0.00029      0.21      12      35 ..     144     167 ..     142     183 .. 0.93
   2 ?    1.5   0.6      0.42   3.2e+02       5      24 ..     234     253 ..     231     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
    APC_N_CC  12 aLkkenthlrrELedNSshLskLE 35 
                  Lk en++l+ ELe    +L k+E
  CDO70707.1 144 SLKEENATLKAELERQKEQLAKME 167
                 59********************99 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.42
    APC_N_CC   5 QLvrQvEaLkkenthlrrEL 24 
                 QLvr v  L  e   lr E 
  CDO70707.1 234 QLVRRVRELEEEIRVLRVEN 253
                 9*********9999999875 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.2    0.0028       2.1      46      89 ..     141     184 ..     136     206 .. 0.78
   2 ?    6.7   2.6    0.0068       5.1      66     107 ..     237     278 ..     234     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  46 nlaslkhENdnLsslLkRKerrlkdlekelselkesveelklek 89 
                 ++aslk+EN  L++ L+R + +l  +e  l+  +e+ ++l+ + 
  CDO70707.1 141 SMASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLRDSI 184
                 5899*******************999999998888877766554 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0068
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH CS
        SHE3  66 rrlkdlekelselkesveelklekkqlkkrlenssasetele 107
                 rr+++le+e+  l+ ++e++k+    +++r+e++++s ++ +
  CDO70707.1 237 RRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKK 278
                 888888888888888888888888888888888877655443 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.5    0.0052       3.9      74     122 ..     146     194 ..     137     212 .. 0.67
   2 ?    8.2   9.1    0.0026       1.9      78     147 ..     233     303 ..     226     323 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0052
         ERM  74 eeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeea 122
                 +ee + l+++l++ ++++a++e + ++++e+ ++L++ ++ ar++  +a
  CDO70707.1 146 KEENATLKAELERQKEQLAKMEIALKARQEQDQQLRDSIMIARKEAHRA 194
                 4566666666666666666666666666666666666666666655443 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0026
         ERM  78 eklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekllealstpskses.eenveeset 147
                  +l r++re e+e++ l+ e+e++++   r +e+ e+ +e+ +++ke+  +a st + se  ee++e++  
  CDO70707.1 233 PQLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAKAAAESTDVVSERiEEEPEAEAA 303
                 47788888888888888888888888888888888888888887777766666666554332222222222 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.6     0.011       8.1      30      68 ..     141     179 ..     136     194 .. 0.68
   2 ?    7.6   1.5    0.0077       5.7      27      64 ..     235     281 ..     229     317 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  30 elaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 ++a+l eena+L++e e+ +e+l++ e + k+++++ ++
  CDO70707.1 141 SMASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQ 179
                 578899999999999999999994443333333333322 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0077
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..........XXXXXXXXXXXX CS
        YabA  27 lkeelaelleenaeLeleneklrerl..........eeeekkekekkk 64 
                 l +++ el ee + L++enek + ++          + e++k+k++ k
  CDO70707.1 235 LVRRVRELEEEIRVLRVENEKQKAMIvrfrerweklK-ESAKRKKEAK 281
                 4455566666666666666666666555555544431.1222222222 PP

>> WD40_alt  Alternative WD40 repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.1    0.0014       1.1      16      31 ..     235     250 ..     232     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
    WD40_alt  16 lkvrvseLeeEVrtLr 31 
                 l  rv eLeeE+r+Lr
  CDO70707.1 235 LVRRVRELEEEIRVLR 250
                 6679***********9 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.5   0.00063      0.47      48      90 ..     141     183 ..     136     198 .. 0.88
   2 ?    4.5   5.0     0.027        20      60     121 ..     236     297 ..     228     322 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00063
         GAS  48 elseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknl 90 
                  ++ +++en  lk +L++++e++++++ +lk  +++ q+l+ +
  CDO70707.1 141 SMASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLRDS 183
                 69999******************************99999875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.027
         GAS  60 kepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekveke 121
                 +  ++++eee+  Lr + ++++   +++++  ++lke+ k  k+ k  +e+     e++e+e
  CDO70707.1 236 VRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAKAAAESTDVVSERIEEE 297
                 44555566666666666666666666666666666666666666665555555555555554 PP

>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.9     0.001      0.74     188     226 ..     143     181 ..     139     200 .. 0.82
   2 ?    4.4   2.6     0.037        28     181     243 ..     233     299 ..     225     307 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.001
  DASH_Spc34 188 eelseeieeleaeiaeQkkqLeaqnknesessseddses 226
                 ++l+ee ++l+ae + Qk+qL+++++  ++++++d++ +
  CDO70707.1 143 ASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLR 181
                 57999***********************99988766443 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.037
  DASH_Spc34 181 eelreeYeelseeieeleaeiaeQkkqLeaqnknese.ssseddsesetsk.....skdvdelirkEee 243
                  +l ++ +el+eei+ l+ e ++Qk+ + + +++ ++ ++s ++ ++e+ k     + +v+e i+ E e
  CDO70707.1 233 PQLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKlKESAKR-KKEA-KaaaesTDVVSERIEEEPE 299
                 67888999*****************9886554433330222222.2222.1245668899999999866 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   2.3     0.028        21      40      78 ..     143     181 ..     134     201 .. 0.54
   2 ?    9.1   3.1   0.00095      0.71      46      95 ..     232     281 ..     228     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.028
     DUF3450  40 dklddekqellaeyralkeeleslevyneqlerlvasqe 78 
                  +l++e ++l+ae+++ ke+l+++e+  +  +++ ++++
  CDO70707.1 143 ASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLR 181
                 344444444444444444444444444444444333333 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00095
     DUF3450  46 kqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeie 95 
                   +l++++r+l+ee+  l+v+ne++++++   +++ ++l+e+ ++ +e +
  CDO70707.1 232 DPQLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAK 281
                 67899************************************998877665 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.7      0.01       7.6      38      61 ..     143     166 ..     133     198 .. 0.84
   2 ?    6.2   0.6     0.017        13      47      72 ..     235     260 ..     228     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.01
    CCDC-167  38 esleeEeaslkeqleenekeLksL 61 
                  sl+eE a+lk +le++ ++L+++
  CDO70707.1 143 ASLKEENATLKAELERQKEQLAKM 166
                 589999999999999999999954 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.017
    CCDC-167  47 lkeqleenekeLksLrkeNrksmlls 72 
                 l  +++e e+e   Lr eN k+ ++ 
  CDO70707.1 235 LVRRVRELEEEIRVLRVENEKQKAMI 260
                 678899***************98765 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   0.00016      0.12      20      93 ..     108     180 ..      89     198 .. 0.56
   2 ?    0.1   8.6      0.83   6.2e+02      35      84 ..     265     305 ..     239     319 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
  eIF3_subunit  20 vaa......kWddEd.ededvkdswdaeeeeeeekekakkaaeakakaakakkk.kskkqkiaekeerrkaeeeeaeeeeel 93 
                            +Wdd+  +++d++ds+     + ++  +  k+++a+ ka+  ++k +  k++ia k  r+++ +       +l
    CDO70707.1 108 S-HafdlkdDWDDDAfAEDDMADSFCLIPAKTDPSMASLKEENATLKAELERQKeQLAKMEIALKA-RQEQDQ-------QL 180
                   2.1345567999998888899999998888877777776665544443333333033344444444.222222.......22 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.83
  eIF3_subunit  35 dswdaeeeeeeekekakkaaeakakaakakkkkskkqkiaekeerrkaee 84 
                   + w++ +e+ ++k++a         +a+a+     +++i+e+ e+++a+e
    CDO70707.1 265 ERWEKLKESAKRKKEA---------KAAAESTDVVSERIEEEPEAEAAAE 305
                   4444444444333333.........3334444455555555442222222 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.3     0.028        21     282     336 ..     143     197 ..     124     210 .. 0.74
   2 ?    5.8   3.1    0.0059       4.4     265     348 ..     230     313 ..     227     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.028
                    HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH CS
  Peptidase_S46 282 allkeemkkdpeirikyasklagleNylKnliGmlealkkkkvlekkqaeeaalr 336
                    a lkee ++ ++   +++++la++e +lK+++ + + l+++ ++++k+a+ a + 
     CDO70707.1 143 ASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLRDSIMIARKEAHRAMIS 197
                    5566666666666667777888888888888888888888888888887766554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0059
                    HHHTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCT-H.HH CS
  Peptidase_S46 265 rrdvalparievleeriallkeemkkdpeirikyasklagleNylKnliGmlealkkkkvlekkqaeeaalrawlkkdpekkek 348
                    +rd +l +r++ lee+i++l+ e +k++++ ++ +++ ++l+ ++K+ +   +a + ++v+ ++ +ee + +a++++d+  k++
     CDO70707.1 230 ERDPQLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAKAAAESTDVVSERIEEEPEAEAAAERDDGGKKA 313
                    56778889999***********************************************************99999998876554 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.5      0.03        23       8      61 ..     143     196 ..     136     201 .. 0.72
   2 ?    8.0   3.3    0.0027         2      13      72 ..     231     290 ..     224     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.03
                 TTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHH CS
        GrpE   8 eeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfai 61 
                 +++++e+++l++ele+ ++++++++ +l+  +++ ++lr      ++ea++  i
  CDO70707.1 143 ASLKEENATLKAELERQKEQLAKMEIALKARQEQDQQLRDSIMIARKEAHRAMI 196
                 566778888888888888888888888877777777787777777777776655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0027
                 HHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        GrpE  13 eeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvl 72 
                 +  +l +++ ele+e++ l  + ++++a +  +r+r ek ke ak+++  k a +  +v+
  CDO70707.1 231 RDPQLVRRVRELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKEAKAAAESTDVV 290
                 556677789999999999999999999999999999999999999999988888776665 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   4.5       0.2   1.5e+02      19      58 ..     144     181 ..     142     198 .. 0.75
   2 ?    8.7   0.6    0.0032       2.4       8      40 ..     230     262 ..     225     296 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
  Cep57_MT_bd  19 eLedEfehlklelqelaaqynaldpslgkrkRkdLaeele 58 
                   L++E + lk+el++  +q+ +++ +l  r  ++  ++l+
   CDO70707.1 144 SLKEENATLKAELERQKEQLAKMEIALKAR--QEQDQQLR 181
                  6999********************555544..44444444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0032
  Cep57_MT_bd   8 spkeaLaevlkeLedEfehlklelqelaaqyna 40 
                  + + +L + ++eLe+E++ l++e ++  a++  
   CDO70707.1 230 ERDPQLVRRVRELEEEIRVLRVENEKQKAMIVR 262
                  55668999**************99999988854 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.8    0.0017       1.3      64     100 ..     144     180 ..     138     194 .. 0.55
   2 ?    3.3   3.4      0.11        80      57      95 ..     241     279 ..     228     308 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
        ADIP  64 kleaeierlqskierlktqleqlerelalvqakerql 100
                 +l+ e++ l+++ er k+ql++ e  l++ q++++ql
  CDO70707.1 144 SLKEENATLKAELERQKEQLAKMEIALKARQEQDQQL 180
                 3344444445555555555555555555444444444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
        ADIP  57 slnetirkleaeierlqskierlktqleqlerelalvqa 95 
                 +l+e+ir l+ e+e++++ i r  ++ e+l+  ++  ++
  CDO70707.1 241 ELEEEIRVLRVENEKQKAMIVRFRERWEKLKESAKRKKE 279
                 345555555555555555555555555555555553333 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.0   0.00018      0.14      32      50 ..     143     161 ..     138     163 .. 0.91
   2 ?    0.2   0.6       1.2   9.3e+02       6      21 ..     163     178 ..     161     188 .. 0.75
   3 ?    1.5   0.6      0.51   3.8e+02      29      50 ..     244     265 ..     229     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
    Mto2_bdg  32 eelkaeNrlLkaeLerdrs 50 
                 + lk+eN+ LkaeLer+++
  CDO70707.1 143 ASLKEENATLKAELERQKE 161
                 689**************98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
    Mto2_bdg   6 LreLerqLkaereaRl 21 
                 L  +e  Lka +e+ +
  CDO70707.1 163 LAKMEIALKARQEQDQ 178
                 5679999***997654 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.51
    Mto2_bdg  29 erLeelkaeNrlLkaeLerdrs 50 
                 e++  l+ eN++ ka++ r r+
  CDO70707.1 244 EEIRVLRVENEKQKAMIVRFRE 265
                 6777788888888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2198  (0.122595); expected 358.6 (0.02)
Passed bias filter:                      871  (0.0485805); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 2103.79
//
Query:       CDO70708.1  [L=288]
Description: hypothetical protein BN946_scf184798.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1964.29
//
Query:       CDO70709.1  [L=511]
Description: hypothetical protein BN946_scf184798.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.5e-143  477.8  11.6     4e-143  477.6  11.6    1.0  1  Cpn60_TCP1      TCP-1/cpn60 chaperonin family
     0.0017   17.9   0.2     0.0046   16.5   0.0    1.8  2  Sua5_yciO_yrdC  Telomere recombination
  ------ inclusion threshold ------
       0.18   11.6   2.8       0.38   10.6   0.1    2.4  2  SCAB_CC         Coiled-coil regions of plant-specific actin-b
        3.6    7.6   5.0        1.3    9.0   0.1    2.7  3  ATP-synt_Eps    Mitochondrial ATP synthase epsilon chain


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.6  11.6  8.8e-147    4e-143      13     488 ..       2     497 ..       1     500 [. 0.96

  Alignments for each domain:
  == domain 1  score: 477.6 bits;  conditional E-value: 8.8e-147
                 XXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHHHHHHHH.HHHXE CS
  Cpn60_TCP1  13 GmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekalekaleaL.keiav 110
                 G+dKmlv+++g+v+++nDGatil+ l +ehPa ++ v++a++qd+evGDGTt+vv++a+eLl++a +l+++++hpttii gy+ a+ +a +++ ++   
  CDO70709.1   2 GLDKMLVDNIGEVTISNDGATILSLLAVEHPAGRVFVDLAQKQDKEVGDGTTSVVLIAAELLRRANELVKQKIHPTTIITGYRLACREACKFMqDQL-- 98 
                 99*******************************************************************************************5555.. PP

                 EBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS....EECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSCEEECEEEE CS
  Cpn60_TCP1 111 eisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene....keldlgrikvvkieggsledselveGlvldkgvlspdmpkklenakvl 205
                 +++++   re+L+++a+ts+ssk++  + + ++ ++vdA++++++ +     ++ ++ ++v+k +g+s ++s +v+G++l+++v+s+ m+k+++nak++
  CDO70709.1  99 SVKVDALGREALINAAKTSMSSKIIGGDDDLFAPMAVDAMLAVKTINsrgdIKYPVKAVNVLKAHGRSARESLFVKGYALNCTVASQAMKKRITNAKIA 197
                 8888889*********************************888777679887889999***************************************** PP

                 EESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT--EBSCGGGG CS
  Cpn60_TCP1 206 lldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGatavssledl 304
                 +ld  L+ ++ +  +++ ++d+e+le+++k+e ++++e+++ki ++g+nvv+++kgiddl+l+ ++++g +a+rr++k+dl+r+akatG+t+vssl++l
  CDO70709.1 198 CLDINLQKARMQLGVQILVDDPEKLEDIRKREAEITLERIRKILAAGANVVLTTKGIDDLCLKEFVEAGAMAVRRCRKEDLRRIAKATGGTLVSSLANL 296
                 ************************************************************************************************666 PP

                 GCGC......-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCC CS
  Cpn60_TCP1 305 tpee......lGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsge 397
                 + ee      lG+a++v +e+i+++++++i+++k  ++a+i+lrga+d++lde+era++d l+++k+++e++ vvpGGGa+e++l+ +l+++a+++ ++
  CDO70709.1 297 EGEEsfepsyLGYADEVVQERISDDELILIKGTKVVNSASIVLRGANDYMLDEMERALHDTLSIIKRTLESGTVVPGGGAVETALSIYLENFATTLGSR 395
                 6555566666***************************************************************************************** PP

                 HHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTX...........TTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEE CS
  Cpn60_TCP1 398 eqlaieafakALevipktLaeNaGldpievlaklraahnkge...........kelgidvesgeiidlveagvvDplkvkrqalksAteaastiLride 485
                 eqlai  fa+AL+vipktLa Na  d++e++aklr+ hn+++             +g+d+ +g+++d v+ag+++p+  k ++lksA+eaa +iLrid+
  CDO70709.1 396 EQLAIAEFASALLVIPKTLAVNAAKDSTELVAKLRSYHNAAQnapigdpkkilLRYGLDLLNGQVRDNVAAGILEPTVSKVRSLKSAFEAAVSILRIDD 494
                 **************************************8887888888888889********************************************* PP

                 EEX CS
  Cpn60_TCP1 486 iik 488
                  i+
  CDO70709.1 495 AIQ 497
                 997 PP

>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.5   6.6e+03      14      22 ..      80      88 ..      75      92 .. 0.85
   2 !   16.5   0.0     1e-06    0.0046      31     167 ..     200     340 ..     175     347 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
                    SSSEEEEEE CS
  Sua5_yciO_yrdC 14 etvYgLacd 22
                    +t+Y Lac+
      CDO70709.1 80 ITGYRLACR 88
                    69******6 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1e-06
                     HHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-T..S-HHHHTTTTEEEEEE-SSHHHHHHHHHCTS-EEE CS
  Sua5_yciO_yrdC  31 rlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskek..lpkevapglktvGvrlPdtplarlLlealgeplva 123
                      +   K r  +  +++lv++ e+l+++ ++e e  + ++ + +  G  ++l+++  ++  l++    + + ++vr   ++  r++++a+g +lv+
      CDO70709.1 200 DINLQKARM-QLGVQILVDDPEKLEDIRKREAEITLERIRKILAAGANVVLTTKGIDDlcLKEF--VEAGAMAVRRCRKEDLRRIAKATGGTLVS 291
                     455556677.88899************9988888888888888889988888875555533333..56899************************ PP

                     EES-STTS-S-S.....SHHHHHHHC-TTSECB-SS---SSS---EEEE CS
  Sua5_yciO_yrdC 124 TSanlsgepsit.....daeeveeelgeivdlildggeiavgvdstVvd 167
                     + anl+ge+s        a+ev +e  +  +lil +g   v+ +s V++
      CDO70709.1 292 SLANLEGEESFEpsylgYADEVVQERISDDELILIKGTKVVNSASIVLR 340
                     *******966531111133444444444445666666555556665555 PP

>> SCAB_CC  Coiled-coil regions of plant-specific actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   8.4e-05      0.38      25      84 ..      41     100 ..      33     119 .. 0.88
   2 ?    0.0   0.4      0.15   6.6e+02      44     113 ..     157     225 ..     153     241 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.4e-05
     SCAB_CC  25 aGknkddveesismveaLavqLtkregellqekaevkklasflkqasedakklveeersf 84 
                 a k+  +v +  + v  +a +L +r +el+++k+  + + + +++a  +a k+++++ s+
  CDO70709.1  41 AQKQDKEVGDGTTSVVLIAAELLRRANELVKQKIHPTTIITGYRLACREACKFMQDQLSV 100
                 56777889999999999***********************************99887664 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.15
     SCAB_CC  44 vqLtkregellqekaevkklasflkqasedakklveeersfaraeiesaraavqr.veealeeeeksskas 113
                 v++ k  g   +e   vk  a     as+  kk + +++ +a+ +i+  +a +q  v+ ++++ ek  + +
  CDO70709.1 157 VNVLKAHGRSARESLFVKGYALNCTVASQAMKKRITNAK-IACLDINLQKARMQLgVQILVDDPEKL-EDI 225
                 555566666666777777778888889999888777776.577777777776664144444444443.333 PP

>> ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.41   1.9e+03      16      24 ..      58      66 ..      56      66 .. 0.89
   2 ?   -2.4   0.1       1.1   5.1e+03      25      43 ..     178     196 ..     177     197 .. 0.77
   3 ?    9.0   0.1   0.00029       1.3      15      39 ..     264     288 ..     259     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
                  HHHHHCCHS CS
  ATP-synt_Eps 16 iaAravRra 24
                  iaA+++Rra
    CDO70709.1 58 IAAELLRRA 66
                  9******98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                   S-TTT--CCCCCS----EE CS
  ATP-synt_Eps  25 LKeelraaAekreetelky 43 
                   L+ +  ++A+k+  t++k+
    CDO70709.1 178 LNCTVASQAMKKRITNAKI 196
                   6666778999999999986 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00029
                   HHHHHHCCHSS-TTT--CCCCCS-- CS
  ATP-synt_Eps  15 niaAravRraLKeelraaAekreet 39 
                      A avRr+ Ke+lr  A++ + t
    CDO70709.1 264 EAGAMAVRRCRKEDLRRIAKATGGT 288
                   55699**************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3543.59
//
Query:       CDO70710.1  [L=639]
Description: hypothetical protein BN946_scf184798.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-22   78.6  12.8    2.6e-05   23.8   0.0    7.5  7  TPR_1       Tetratricopeptide repeat
    2.1e-22   77.4  10.3     0.0003   20.7   0.0    7.7  7  TPR_2       Tetratricopeptide repeat
    2.9e-19   69.3   9.8    5.6e-06   26.8   0.4    5.8  5  TPR_19      Tetratricopeptide repeat
    1.7e-13   50.0   6.2    0.00044   19.9   0.1    6.6  7  TPR_11      TPR repeat
    2.4e-13   49.5   1.3      0.043   14.2   0.1    6.9  7  TPR_17      Tetratricopeptide repeat
    5.7e-13   48.5   5.4     0.0085   16.8   0.0    7.2  7  TPR_14      Tetratricopeptide repeat
    7.6e-13   48.9  12.9     0.0065   17.1   0.1    6.0  6  TPR_16      Tetratricopeptide repeat
    7.4e-11   41.4   6.7       0.34   11.2   0.0    7.5  7  TPR_8       Tetratricopeptide repeat
    1.9e-10   40.9  12.7      0.047   14.0   0.2    6.0  6  TPR_12      Tetratricopeptide repeat
    2.2e-09   37.4   6.3        2.5    8.9   0.0    7.3  7  TPR_6       Tetratricopeptide repeat
    1.3e-08   34.9  12.9      0.055   13.7   0.5    5.2  5  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    5.5e-08   32.9   6.9     0.0014   18.7   0.2    4.4  4  TPR_9       Tetratricopeptide repeat
    0.00014   21.2  11.2      0.056   12.7   0.1    3.2  3  TPR_15      Tetratricopeptide repeat
     0.0054   16.4   0.1        4.2    7.2   0.0    2.7  2  PPTA        Protein prenyltransferase alpha subunit repeat
  ------ inclusion threshold ------
      0.026   14.4   4.0        4.6    7.3   0.0    4.1  4  TPR_10      Tetratricopeptide repeat
      0.035   14.2   2.5       0.57   10.3   1.1    3.3  3  MIT         MIT (microtubule interacting and transport) domai
       0.14   12.5   0.8       0.41   11.0   0.2    2.2  2  TPR_20      Tetratricopeptide repeat
       0.18   11.9   4.2        1.6    8.9   0.2    3.3  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00055      0.55       8      32 ..     328     352 ..     325     353 .. 0.92
   2 !   23.8   0.0   2.7e-08   2.6e-05       2      34 .]     390     422 ..     389     422 .. 0.95
   3 ?    2.7   0.0      0.13   1.3e+02      16      30 ..     437     451 ..     435     455 .. 0.86
   4 !   20.9   0.0   2.3e-07   0.00023       2      34 .]     457     489 ..     456     489 .. 0.96
   5 !   14.3   0.3   2.6e-05     0.026      14      34 .]     524     544 ..     520     544 .. 0.89
   6 !    7.4   0.2    0.0042       4.2       2      25 ..     546     569 ..     545     570 .. 0.90
   7 ?    0.7   0.0      0.53   5.3e+02       2      16 ..     580     594 ..     579     595 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00055
                 HHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   8 GnayfklgkydeAleyyekALelnP 32 
                 G a+++lg+y  A+ ++e + +l+P
  CDO70710.1 328 GKAHYELGQYPAAERAFEAVRTLEP 352
                 899***************9988887 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.7e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a+   Gn++  +++  +Al ++++A +l+P++
  CDO70710.1 390 QAWIAVGNCFSLQKEKTQALTCFRRAAQLDPTC 422
                 799999*************************86 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.13
                 -HHHHHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekALel 30 
                 ++++A+ +++ AL+ 
  CDO70710.1 437 DLNKAISFFQSALRA 451
                 889*********975 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 2.3e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a+y+lG +y+++ k+  A  +++kA ++ P+n
  CDO70710.1 457 NAWYGLGTCYMRMSKLRLADYHFRKASSIHPQN 489
                 79***************************9987 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 2.6e-05
                 TT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  14 lgkydeAleyyekALelnPnn 34 
                  ++ydeAl+ +++A++  P+n
  CDO70710.1 524 YQNYDEALKLFNQAIQCSPEN 544
                 579*************99987 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyye 25 
                  + y ++ ++  +++y  Ale+ +
  CDO70710.1 546 LVRYHRAKMLIAMKRYTAALEDLQ 569
                 5679*****************986 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHTT- CS
       TPR_1   2 kalynlGnayfklgk 16 
                 ++l++l+ +y+ lg+
  CDO70710.1 580 NVLFQLAKVYRLLGD 594
                 5799*********97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.1e-05     0.021       5      32 ..     325     352 ..     321     354 .. 0.89
   2 !   20.7   0.0     3e-07    0.0003       1      33 [.     389     421 ..     389     422 .. 0.95
   3 ?    2.2   0.1      0.26   2.6e+02      16      31 ..     437     452 ..     435     455 .. 0.87
   4 !   15.1   0.0   1.8e-05     0.018       2      34 .]     457     489 ..     456     489 .. 0.95
   5 !   16.0   0.2   9.7e-06    0.0097      13      34 .]     523     544 ..     519     544 .. 0.89
   6 ?    5.8   0.1     0.017        17       3      26 ..     547     570 ..     545     577 .. 0.85
   7 ?    1.9   0.0      0.32   3.2e+02       3      16 ..     581     594 ..     579     597 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  + G+a+y+lg+y  A++afe++  l+P
  CDO70710.1 325 AMVGKAHYELGQYPAAERAFEAVRTLEP 352
                 5679******************999988 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 3e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++a+ + G++   +++  +Al +f++A +ldP+
  CDO70710.1 389 PQAWIAVGNCFSLQKEKTQALTCFRRAAQLDPT 421
                 579*****************************8 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.26
       TPR_2  16 dyeeAleafekAleld 31 
                 d+++A+ +f+ Al+ d
  CDO70710.1 437 DLNKAISFFQSALRAD 452
                 889**********976 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 1.8e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+y lG +y+++ ++  A  +f+kA ++ P+n
  CDO70710.1 457 NAWYGLGTCYMRMSKLRLADYHFRKASSIHPQN 489
                 59***************************9987 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 9.7e-06
       TPR_2  13 klgdyeeAleafekAleldPnn 34 
                 + ++y+eAl++f++A++  P+n
  CDO70710.1 523 RYQNYDEALKLFNQAIQCSPEN 544
                 568*****************97 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.017
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 + y +++ ++++++y  Ale+++ 
  CDO70710.1 547 VRYHRAKMLIAMKRYTAALEDLQY 570
                 6799****************9985 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.32
       TPR_2   3 alynlGlayyklgd 16 
                 +l++l+++y+ lgd
  CDO70710.1 581 VLFQLAKVYRLLGD 594
                 79**********98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.063        62      32      56 ..     328     352 ..     307     365 .. 0.78
   2 !   13.4   0.0   8.6e-05     0.086      14      64 ..     378     428 ..     374     430 .. 0.91
   3 !   17.7   0.1   3.9e-06    0.0039       5      40 ..     436     471 ..     434     476 .. 0.91
   4 !   26.8   0.4   5.6e-09   5.6e-06       5      46 ..     525     566 ..     523     566 .. 0.96
   5 !   20.0   0.2   7.3e-07   0.00072       1      63 [.     555     618 ..     555     623 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.063
      TPR_19  32 AeallalgqldeAealLdalpeedp 56 
                  +a+++lgq+ +Ae++ +a+   +p
  CDO70710.1 328 GKAHYELGQYPAAERAFEAVRTLEP 352
                 7899999999999999998876655 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.6e-05
      TPR_19  14 leqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                  +++l+ dpk++ a+++  ++   +++ ++A  +  ++ + dp +a++ +L
  CDO70710.1 378 AQELLSIDPKSPQAWIAVGNCFSLQKEKTQALTCFRRAAQLDPTCAYAYTL 428
                 45589**************************************99998877 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 3.9e-06
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgq 40 
                 +d+  A++++++al +d+ + +a+++L  +++ +  
  CDO70710.1 436 EDLNKAISFFQSALRADARHYNAWYGLGTCYMRMSK 471
                 7999****************************9866 PP

  == domain 4  score: 26.8 bits;  conditional E-value: 5.6e-09
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 ++y+eAl+l+ qa+q +p+na +r+  A+ l+a++++++A +
  CDO70710.1 525 QNYDEALKLFNQAIQCSPENALVRYHRAKMLIAMKRYTAALE 566
                 79*************************************975 PP

  == domain 5  score: 20.0 bits;  conditional E-value: 7.3e-07
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryas 63 
                 l+a+++y++Al+ l+++ + +p+ ++++ +LA+++  lg+  +  +lL+++ + +p++ a +++
  CDO70710.1 555 LIAMKRYTAALEDLQYLRDTSPEESNVLFQLAKVYRLLGDDVKFTQLLAEVRDVAPKSlAKIRK 618
                 799**************************************************99996565555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.031        31       1      13 [.     328     340 ..     328     350 .. 0.91
   2 ?    2.9   0.0     0.086        86      18      36 ..     379     397 ..     379     403 .. 0.84
   3 !   11.7   0.0   0.00016      0.16      11      32 ..     406     427 ..     396     431 .. 0.84
   4 !    6.0   0.0    0.0098       9.8       9      41 ..     437     469 ..     436     470 .. 0.92
   5 ?   -2.0   0.0       3.1   3.1e+03      16      28 ..     478     490 ..     475     492 .. 0.88
   6 !   19.9   0.1   4.4e-07   0.00044       9      36 ..     526     553 ..     525     559 .. 0.92
   7 ?    2.9   0.1     0.091        91       3      41 ..     554     592 ..     552     593 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.031
      TPR_11   1 GdayyeqGkyeeA 13 
                 G+a ye+G+y++A
  CDO70710.1 328 GKAHYELGQYPAA 340
                 899*******999 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.086
      TPR_11  18 kkAlkldPdnaeayynLGl 36 
                 ++ l +dP+++ a+ + G+
  CDO70710.1 379 QELLSIDPKSPQAWIAVGN 397
                 56799********998887 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00016
      TPR_11  11 eeAieaYkkAlkldPdnaeayy 32 
                 ++A++++++A +ldP+ a ay 
  CDO70710.1 406 TQALTCFRRAAQLDPTCAYAYT 427
                 79******************96 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0098
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ++++Ai  ++ Al+ d    +a+y+LG  y+++
  CDO70710.1 437 DLNKAISFFQSALRADARHYNAWYGLGTCYMRM 469
                 6899***********************998876 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 3.1
      TPR_11  16 aYkkAlkldPdna 28 
                 +++kA  + P+na
  CDO70710.1 478 HFRKASSIHPQNA 490
                 6799*******98 PP

  == domain 6  score: 19.9 bits;  conditional E-value: 4.4e-07
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGl 36 
                 +y+eA++ +++A++ +P+na + y++++
  CDO70710.1 526 NYDEALKLFNQAIQCSPENALVRYHRAK 553
                 8***********************9987 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.091
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ++ +  +y++A+e+++   + +P+  ++++ L+++y  +
  CDO70710.1 554 MLIAMKRYTAALEDLQYLRDTSPEESNVLFQLAKVYRLL 592
                 6778899*********99999999999999999999665 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.81   8.1e+02      11      33 ..     319     341 ..     308     342 .. 0.87
   2 !    8.0   0.0    0.0041       4.1       1      32 [.     377     408 ..     377     410 .. 0.90
   3 ?    0.8   0.0      0.83   8.3e+02       1      17 [.     411     427 ..     411     430 .. 0.87
   4 !    8.0   0.1    0.0041       4.1       2      30 ..     445     473 ..     444     477 .. 0.85
   5 ?   -0.0   0.0       1.5   1.5e+03       2      16 ..     479     493 ..     478     499 .. 0.87
   6 !   14.2   0.1   4.3e-05     0.043       1      33 [.     533     565 ..     533     566 .. 0.91
   7 !    7.5   0.0    0.0062       6.1       9      29 ..     575     595 ..     572     597 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.81
      TPR_17  11 nnadaynnLAelllknGdlmtAr 33 
                  +a ++ + +++++++G++  A+
  CDO70710.1 319 RSASVMAMVGKAHYELGQYPAAE 341
                 5788999999********99886 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0041
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 l ++ l +dP+++ a+   +++++ ++++ +A
  CDO70710.1 377 LAQELLSIDPKSPQAWIAVGNCFSLQKEKTQA 408
                 57899******************999988777 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.83
      TPR_17   1 lylkaleldPnnadayn 17 
                 ++++a++ldP+ a+ay+
  CDO70710.1 411 CFRRAAQLDPTCAYAYT 427
                 799*******9888886 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0041
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlm 30 
                 ++ al+ d  + +a++ L++++ +  +l+
  CDO70710.1 445 FQSALRADARHYNAWYGLGTCYMRMSKLR 473
                 7889******************9776665 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 1.5
      TPR_17   2 ylkaleldPnnaday 16 
                 ++ka  ++P na+++
  CDO70710.1 479 FRKASSIHPQNAVLL 493
                 78999*******976 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 4.3e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l+ +a+++ P na + + +A+ l   +++  A+
  CDO70710.1 533 LFNQAIQCSPENALVRYHRAKMLIAMKRYTAAL 565
                 699********************9999988886 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.0062
      TPR_17   9 dPnnadaynnLAelllknGdl 29 
                  P  ++++++LA++++ +Gd 
  CDO70710.1 575 SPEESNVLFQLAKVYRLLGDD 595
                 58899*************995 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0057       5.7       6      33 ..     326     353 ..     321     363 .. 0.85
   2 ?    6.7   0.0     0.015        15       9      40 ..     363     394 ..     359     398 .. 0.88
   3 !    8.0   0.1    0.0058       5.8       1      40 [.     389     428 ..     389     431 .. 0.87
   4 ?    2.3   0.0      0.39   3.9e+02      16      43 ..     437     464 ..     432     465 .. 0.88
   5 ?    4.3   0.0     0.088        88       2      38 ..     457     493 ..     456     497 .. 0.92
   6 !   16.8   0.0   8.6e-06    0.0085      10      43 ..     520     553 ..     519     554 .. 0.92
   7 ?    1.5   0.0      0.71     7e+02       3      34 ..     581     612 ..     579     619 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0057
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 + ++a+++lG++ +A+++++++  l P 
  CDO70710.1 326 MVGKAHYELGQYPAAERAFEAVRTLEPY 353
                 5689*****************9888885 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawll 40 
                  +l++l++  +   l++++l+ +P++++aw++
  CDO70710.1 363 TLLWHLQKNTKLSFLAQELLSIDPKSPQAWIA 394
                 57899999999999****************86 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0058
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawll 40 
                 p+a+ a +  +  + +  +A++++rra +l+P+ a a++l
  CDO70710.1 389 PQAWIAVGNCFSLQKEKTQALTCFRRAAQLDPTCAYAYTL 428
                 578888888888999999**************99988865 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.39
      TPR_14  16 dpdeAiallrralalaPddaeawlllaq 43 
                 d+ +Ai  ++ al+++  +  aw+ l+ 
  CDO70710.1 437 DLNKAISFFQSALRADARHYNAWYGLGT 464
                 6789*******************99985 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.088
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a++ l+  +++  +++ A  ++r+a + +P++a+++
  CDO70710.1 457 NAWYGLGTCYMRMSKLRLADYHFRKASSIHPQNAVLL 493
                 699******************************9876 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 8.6e-06
      TPR_14  10 allalGdpdeAiallrralalaPddaeawlllaq 43 
                 + ++ +++deA++l+++a++  P++a ++++ a+
  CDO70710.1 520 VQERYQNYDEALKLFNQAIQCSPENALVRYHRAK 553
                 568999************************9997 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.71
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 +l +la++++ lGd  +  +ll ++ + aP++
  CDO70710.1 581 VLFQLAKVYRLLGDDVKFTQLLAEVRDVAPKS 612
                 6789*********9877778888877778876 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.7       3.9   3.9e+03      14      26 ..     269     281 ..     263     299 .. 0.70
   2 !   12.1   0.1   0.00024      0.24       2      27 ..     326     351 ..     307     354 .. 0.83
   3 !   11.6   0.0   0.00033      0.33      20      65 ..     378     420 ..     377     421 .. 0.91
   4 !   11.7   0.1   0.00031      0.31      13      46 ..     438     468 ..     435     488 .. 0.86
   5 !   17.1   0.1   6.6e-06    0.0065      11      66 ..     525     577 ..     523     579 .. 0.92
   6 !    9.1   0.2    0.0021       2.1       7      65 ..     555     610 ..     549     612 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.9
      TPR_16  14 ddAaaaleaalkr 26 
                 ++A++a+++ l+ 
  CDO70710.1 269 RAAEEAYQTELAE 281
                 5666666665554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00024
      TPR_16   2 alaraalragdyddAaaaleaalkrd 27 
                 + ++a++++g+y++A++a+ea++ + 
  CDO70710.1 326 MVGKAHYELGQYPAAERAFEAVRTLE 351
                 56889999999999999999887665 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00033
      TPR_16  20 leaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++++l  d   P  ++A+ + g+++  q++ + A+  +r+a++ +p
  CDO70710.1 378 AQELLSID---PKSPQAWIAVGNCFSLQKEKTQALTCFRRAAQLDP 420
                 67888889...88889**************************9998 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00031
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                   +A+  ++ al++d    +++ A+++lg ++ r
  CDO70710.1 438 LNKAISFFQSALRAD---ARHYNAWYGLGTCYMR 468
                 56777779*******...*************987 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 6.6e-06
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++yd+A++++++a+      P++a  +++++ ++ + +r+++A++ ++ + + +p 
  CDO70710.1 525 QNYDEALKLFNQAIQCS---PENALVRYHRAKMLIAMKRYTAALEDLQYLRDTSPE 577
                 59***************...************************988888888886 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0021
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 +++ ++y++A++ l+ +++     P+    l+ l+ ++  +g+  +  +l+++  + ap
  CDO70710.1 555 LIAMKRYTAALEDLQYLRDTS---PEESNVLFQLAKVYRLLGDDVKFTQLLAEVRDVAP 610
                 67899*********6666666...*****************998887777777777766 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.027        27       2      27 ..     322     347 ..     321     353 .. 0.86
   2 !   11.2   0.0   0.00035      0.34       2      34 .]     390     422 ..     389     422 .. 0.95
   3 ?    3.6   0.0     0.093        92      16      32 ..     437     453 ..     434     455 .. 0.88
   4 !    8.5   0.0    0.0026       2.6       2      34 .]     457     489 ..     456     489 .. 0.93
   5 ?    4.9   0.1     0.036        36      16      33 ..     526     543 ..     524     544 .. 0.89
   6 ?    2.1   0.1       0.3     3e+02       4      24 ..     548     568 ..     545     569 .. 0.88
   7 ?    1.4   0.0      0.48   4.7e+02       3      16 ..     581     594 ..     579     595 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.027
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 +++ + g+++ +lg+y +A+ ++e +
  CDO70710.1 322 SVMAMVGKAHYELGQYPAAERAFEAV 347
                 678899*****************986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00035
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+   g++ + ++++ +A  ++++a +ldp++
  CDO70710.1 390 QAWIAVGNCFSLQKEKTQALTCFRRAAQLDPTC 422
                 799****************************86 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.093
                 -HHHHHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekaleldp 32 
                 d+++A+++++ al++d 
  CDO70710.1 437 DLNKAISFFQSALRADA 453
                 899**********9997 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0026
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  a+y lg +y+ + ++  A   ++ka ++ p+n
  CDO70710.1 457 NAWYGLGTCYMRMSKLRLADYHFRKASSIHPQN 489
                 69*************************998875 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.036
                 -HHHHHHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekaleldpd 33 
                 +y+eA + +++a++ +p+
  CDO70710.1 526 NYDEALKLFNQAIQCSPE 543
                 8************98886 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.3
                 HHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyy 24 
                  y+ ++ ++ +++y +A e +
  CDO70710.1 548 RYHRAKMLIAMKRYTAALEDL 568
                 689999***********9976 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHTT- CS
       TPR_8   3 ayynlgsiylklgd 16 
                 ++++l+++y+ lgd
  CDO70710.1 581 VLFQLAKVYRLLGD 594
                 79**********98 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   4.7e-05     0.047      22      71 ..     299     347 ..     296     350 .. 0.86
   2 ?    4.2   0.0     0.053        53      47      74 ..     391     418 ..     378     421 .. 0.77
   3 ?    6.2   0.1     0.012        12       6      74 ..     392     451 ..     387     454 .. 0.67
   4 !    8.5   0.2    0.0024       2.4      16      74 ..     435     485 ..     421     488 .. 0.73
   5 !    7.2   0.1    0.0062       6.2      59      73 ..     525     539 ..     519     543 .. 0.63
   6 !   10.1   0.1   0.00075      0.74      10      60 ..     545     594 ..     539     597 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-05
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 Al  ++ +le  ++l+ p+h   a+++   g ++++lg+y +A++++e +
  CDO70710.1 299 ALYDCRLCLEELEKLP-PQHQRSASVMAMVGKAHYELGQYPAAERAFEAV 347
                 6666777788887775.9*****************************965 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.053
      TPR_12  47 tlrnLgrlyralgryeeAlelleealai 74 
                 + ++ g +++++++  +Al  +++a ++
  CDO70710.1 391 AWIAVGNCFSLQKEKTQALTCFRRAAQL 418
                 5567788888888888888888888766 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.012
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +  ++++   +++ ++Al+++++a ++      p    t+++ ++L+   +  +++ +A+++++ al++
  CDO70710.1 392 WIAVGNCFSLQKEKTQALTCFRRAAQLD-----P----TCAYAYTLSGHESIDEDLNKAISFFQSALRA 451
                 4456666666666667777777775555.....5....6677777777777778888888888888876 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0024
      TPR_12  16 lgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  +++ +A+++++ al++        h+   ++ ++Lg++y ++ +++ A +++++a  i
  CDO70710.1 435 DEDLNKAISFFQSALRAD-----ARHY---NAWYGLGTCYMRMSKLRLADYHFRKASSI 485
                 567777777777777777.....5553...48999999998888999999999999776 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0062
      TPR_12  59 gryeeAlelleeala 73 
                  +y+eAl+l+++a++
  CDO70710.1 525 QNYDEALKLFNQAIQ 539
                 466677777766665 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.00075
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgr 60 
                 a+v +++ ++  A + + +ale  + l  +++p+++++l+ L+ +yr+lg+
  CDO70710.1 545 ALVRYHRAKMLIAMKRYTAALEDLQYL-RDTSPEESNVLFQLAKVYRLLGD 594
                 677777777888888888899988655.5789*****************98 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0025       2.5       3      29 ..     324     350 ..     322     352 .. 0.86
   2 ?    5.3   0.0     0.035        35       7      31 ..     396     420 ..     390     421 .. 0.87
   3 ?   -2.2   0.0       8.9   8.8e+03      15      27 ..     437     449 ..     429     451 .. 0.83
   4 ?    6.2   0.0     0.019        19       2      32 ..     458     488 ..     457     489 .. 0.92
   5 ?    4.9   0.0     0.049        49      10      28 ..     521     539 ..     519     542 .. 0.85
   6 ?    4.7   0.2     0.055        55       3      31 ..     548     576 ..     547     578 .. 0.90
   7 ?    3.2   0.0      0.16   1.6e+02       2      18 ..     581     597 ..     580     612 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlike 29 
                 + + ++++++lg++ +A +a+e +++ 
  CDO70710.1 324 MAMVGKAHYELGQYPAAERAFEAVRTL 350
                 55789*****9***********99875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYP 31 
                 + ++  ++++++Al+ ++r  +  P
  CDO70710.1 396 GNCFSLQKEKTQALTCFRRAAQLDP 420
                 77889999***********998777 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 8.9
                 HHHHHHHHHHHHH CS
       TPR_6  15 dtdkAlealerli 27 
                 d  kA+  +++ +
  CDO70710.1 437 DLNKAISFFQSAL 449
                 6789999999877 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A y l+ +y ++ + + A   +++  + +P+
  CDO70710.1 458 AWYGLGTCYMRMSKLRLADYHFRKASSIHPQ 488
                 89*********99******999999999987 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.049
                 HHH.HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrk.lgdtdkAlealerlik 28 
                 +++ + ++d+Al+++++ i+
  CDO70710.1 521 QERyQ-NYDEALKLFNQAIQ 539
                 56646.***********986 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYP 31 
                  y++a+ +++++++++Ale l+ l++  P
  CDO70710.1 548 RYHRAKMLIAMKRYTAALEDLQYLRDTSP 576
                 6999******************9999877 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrklgdtdk 18 
                 +l++la+ yr lgd  k
  CDO70710.1 581 VLFQLAKVYRLLGDDVK 597
                 69*********988665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.025        25      46      81 ..     307     346 ..     296     349 .. 0.77
   2 !   11.1   0.1   0.00035      0.35       8      61 ..     374     425 ..     368     430 .. 0.84
   3 !    7.7   0.2    0.0042       4.2       5      55 ..     438     486 ..     435     495 .. 0.69
   4 !   13.7   0.5   5.5e-05     0.055      37      77 ..     525     566 ..     519     571 .. 0.92
   5 ?    2.1   0.0      0.22   2.2e+02      18      41 ..     574     597 ..     565     620 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.025
                 HHCT.SHHHC-HHHHHHHH...HHHHHTT-HHHHHHHH-S CS
      ANAPC3  46 lrka.klnskslgcrylfA...qcllkLkkyeeAiaaLek 81 
                 l+++ kl +++++++ ++A   ++ ++L++y  A++a+e+
  CDO70710.1 307 LEELeKLPPQHQRSASVMAmvgKAHYELGQYPAAERAFEA 346
                 5555666888888888888888899999999999988875 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00035
                 HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHH CS
      ANAPC3   8 AiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcryl 61 
                   fla  ll+ +++sp++  + + c+ l+++ ++A++ +r+a  +  ++ c+y 
  CDO70710.1 374 LSFLAQELLSIDPKSPQAWIAVGNCFSLQKEKTQALTCFRRA--AQLDPTCAYA 425
                 579999***9********************************..3444445543 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC- CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnsks 55 
                 +++Ai ++  +l a+++++++ y l+ c+ ++++   A + +rka   s +
  CDO70710.1 438 LNKAISFFQSALRADARHYNAWYGLGTCYMRMSKLRLADYHFRKA--SSIH 486
                 556666666667688888888888888888888888888877777..4444 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 5.5e-05
                 T-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3  37 gqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAia 77 
                 ++y++A++l+++a +  +++  +ry  A+ l+++k+y  A+ 
  CDO70710.1 525 QNYDEALKLFNQAiQCSPENALVRYHRAKMLIAMKRYTAALE 566
                 57***********************************99986 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.22
                 HHH--HHHHHHHHHHHHHTT-HHH CS
      ANAPC3  18 aetespedayllAlclylngqykr 41 
                 +++e ++ ++ lA+++ l+g+  +
  CDO70710.1 574 TSPEESNVLFQLAKVYRLLGDDVK 597
                 56777888999********98444 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4     0.042        42      32      60 ..     324     352 ..     292     361 .. 0.71
   2 !    8.0   0.0    0.0031       3.1      18      65 ..     378     425 ..     363     431 .. 0.86
   3 ?    2.0   0.0      0.23   2.3e+02       9      55 ..     436     482 ..     434     492 .. 0.82
   4 !   18.7   0.2   1.4e-06    0.0014       7      62 ..     523     578 ..     520     584 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.042
       TPR_9  32 rrdRGlllaqlGclsaAladLeaylalap 60 
                     G ++++lG++ aA +++ea   l+p
  CDO70710.1 324 MAMVGKAHYELGQYPAAERAFEAVRTLEP 352
                 5557899**************98766665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0031
       TPR_9  18 verllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 ++ ll ++P++p+ +   G +   +    +Al ++ ++++l+p  + a
  CDO70710.1 378 AQELLSIDPKSPQAWIAVGNCFSLQKEKTQALTCFRRAAQLDPTCAYA 425
                 56799*************************************976655 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.23
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeay 55 
                 ed  +a+   ++ l  + ++   ++  G +++++  l+ A   +  +
  CDO70710.1 436 EDLNKAISFFQSALRADARHYNAWYGLGTCYMRMSKLRLADYHFRKA 482
                 7889999999***********************98887776555555 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 1.4e-06
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 r +++++al+  +  ++  P+ +  r+ R+ +l  + ++ aAl+dL++  + +p+ 
  CDO70710.1 523 RYQNYDEALKLFNQAIQCSPENALVRYHRAKMLIAMKRYTAALEDLQYLRDTSPEE 578
                 67899*******************************************98888876 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   2.9   0.00086      0.85      89     190 ..     267     368 ..     260     383 .. 0.83
   2 !   12.7   0.1   5.6e-05     0.056     144     248 ..     387     490 ..     374     494 .. 0.86
   3 ?    4.1   0.2     0.022        22     155     229 ..     520     594 ..     516     608 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00086
      TPR_15  89 ydaepkeaarlaekgwrrfrsprlLssalellerakdydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalap...dsselr 183
                 +++ ++ea+++ ++ ++ +  +r + sa     ra ++   +  l++le+  ++ ++sa +++++++++ + gq  aA r+++ + +l+p   ++ e+ 
  CDO70710.1 267 QERAAEEAYQTELAEYQIYDVMRKFASAA----RAMALYDCRLCLEELEKlPPQHQRSASVMAMVGKAHYELGQYPAAERAFEAVRTLEPyrlTDMEVY 361
                 56778899999999999998888888776....45556667788888887367799***************************99999996667999** PP

      TPR_15 184 aallWll 190
                 ++llW l
  CDO70710.1 362 STLLWHL 368
                 *****98 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.6e-05
      TPR_15 144 qsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrrae.Lrellkawkara...esdasLwgplaaAlllLgrpkkALeylr 238
                 +s++ ++a+++  + + ++ +Al+++r+A +l+p+      a+ ++l   ++ +e L ++++ ++ +    ++  + w  l++ ++++++ + A  ++r
  CDO70710.1 387 KSPQAWIAVGNCFSLQKEKTQALTCFRRAAQLDPT-----CAYAYTLSGHESIDEdLNKAISFFQSALradARHYNAWYGLGTCYMRMSKLRLADYHFR 480
                 799********************************.....78888998888888889999999988874445566678889*************99999 PP

      TPR_15 239 kqakenrkdp 248
                 k  + +++++
  CDO70710.1 481 KASSIHPQNA 490
                 9999999886 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.022
      TPR_15 155 lyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgr 229
                 ++++  + d+Al+++ +A++ +p+++ +r     +li ++r++ + e l+ +++ + ++++    la  + lLg+
  CDO70710.1 520 VQERYQNYDEALKLFNQAIQCSPENALVRYHRAKMLIAMKRYTAALEDLQYLRDTSPEESNVLFQLAKVYRLLGD 594
                 667778889999999999999999999999999999999999988888888887777777766667777777766 PP

>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0042       4.2       5      19 ..     378     392 ..     377     393 .. 0.91
   2 !    6.4   0.1    0.0076       7.6       4      20 ..     444     460 ..     441     460 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0042
                 HHHHHHH-TT-CHHH CS
        PPTA   5 tekliekdpkNYsaW 19 
                  ++l++ dpk+ +aW
  CDO70710.1 378 AQELLSIDPKSPQAW 392
                 689************ PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0076
                 HHHHHHHH-TT-CHHHH CS
        PPTA   4 ltekliekdpkNYsaWn 20 
                 + +++++ d+++Y aW+
  CDO70710.1 444 FFQSALRADARHYNAWY 460
                 56789***********7 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0046       4.6       2      28 ..     321     347 ..     320     350 .. 0.89
   2 ?   -2.5   0.0       5.4   5.4e+03      15      30 ..     402     417 ..     400     418 .. 0.82
   3 ?    4.6   0.0      0.03        30      17      31 ..     526     540 ..     525     541 .. 0.92
   4 ?    0.6   0.1      0.55   5.5e+02       9      26 ..     552     569 ..     545     569 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0046
      TPR_10   2 AsslnNLanalrqrgrydeAealleea 28 
                 As +   + a++++g+y +Ae+ +e +
  CDO70710.1 321 ASVMAMVGKAHYELGQYPAAERAFEAV 347
                 78888999**************99976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.4
      TPR_10  15 rgrydeAealleeala 30 
                 +++ ++A+  +++a +
  CDO70710.1 402 QKEKTQALTCFRRAAQ 417
                 7888999999999976 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.03
      TPR_10  17 rydeAealleealai 31 
                 +ydeA++l+ +a+++
  CDO70710.1 526 NYDEALKLFNQAIQC 540
                 8************98 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.55
      TPR_10   9 analrqrgrydeAealle 26 
                 a +l +++ry++A+++l+
  CDO70710.1 552 AKMLIAMKRYTAALEDLQ 569
                 678999********9975 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.63   6.2e+02       1      17 [.     438     454 ..     438     458 .. 0.86
   2 ?   10.3   1.1   0.00057      0.57      19      47 ..     519     548 ..     517     569 .. 0.64
   3 ?   -0.4   0.0       1.2   1.2e+03      23      39 ..     557     573 ..     551     584 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.63
         MIT   1 ldkAlelvkkAveeDna 17 
                 l+kA+++++ A  +D +
  CDO70710.1 438 LNKAISFFQSALRADAR 454
                 78999****99999975 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00057
         MIT  19 nyeeAlelYkealelLlqalke..kneerre 47 
                 + +e +++Y eal+l++qa+++  +n     
  CDO70710.1 519 KVQERYQNYDEALKLFNQAIQCspEN-ALVR 548
                 67788999999999999999953333.3333 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
         MIT  23 AlelYkealelLlqalk 39 
                 A++ Y+ ale L+ +  
  CDO70710.1 557 AMKRYTAALEDLQYLRD 573
                 8999******9987655 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.6   7.6e+03       4      43 ..     405     443 ..     380     458 .. 0.58
   2 ?   11.0   0.2   0.00041      0.41       8      72 ..     531     593 ..     525     606 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.6
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAle 43 
                 +++ l+ +++a++ +p+  + ++ l+ +    ++  +A++
  CDO70710.1 405 KTQALTCFRRAAQLDPTC-AYAYTLSGHESIDEDLNKAIS 443
                 344444444444444443.445555555555555555555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00041
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealg 72 
                 l+ + +a++ +p++   r+  A+ l+a +ry +Ale L  +  rd + e+  +  ql k+  +lg
  CDO70710.1 531 LKLFNQAIQCSPENALVRYHRAKMLIAMKRYTAALEDLQYL--RDTSPEESNVLFQLAKVYRLLG 593
                 566789999****************************9654..3444555555555555555555 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.15   1.5e+02      10      32 ..     330     352 ..     327     354 .. 0.87
   2 ?   -1.7   0.0       3.3   3.3e+03      25      37 ..     379     391 ..     377     391 .. 0.86
   3 ?    8.9   0.2    0.0016       1.6      13      34 ..     523     544 ..     521     554 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
                 HHHHHT-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C  10 GhyklgeYseArryvdalLeiEP 32 
                 +hy lg+Y  A r  +a+  +EP
  CDO70710.1 330 AHYELGQYPAAERAFEAVRTLEP 352
                 8************9998877776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
                 HHHHHHTTS-HHH CS
  Fis1_TPR_C  25 dalLeiEPenrQa 37 
                 + lL+i+P+  Qa
  CDO70710.1 379 QELLSIDPKSPQA 391
                 789*****99997 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0016
                 HHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  13 klgeYseArryvdalLeiEPen 34 
                 + ++Y+eA+++ ++ +++ Pen
  CDO70710.1 523 RYQNYDEALKLFNQAIQCSPEN 544
                 779******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3924.32
//
Query:       CDO70711.1  [L=312]
Description: hypothetical protein BN946_scf184798.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2343.03
//
Query:       CDO70712.1  [L=138]
Description: hypothetical protein BN946_scf184798.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-17   61.6   0.8    8.5e-17   60.9   0.8    1.4  1  SRR1      SRR1


Domain annotation for each model (and alignments):
>> SRR1  SRR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.8   4.8e-21   8.5e-17       1      55 []      14      75 ..      14      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4.8e-21
        SRR1  1 ivclGLGsfsesssaryQLAlllelveelkiessrs.......vyaqDPvftevDkalLesl 55
                i clGLGs+++s+ ar QLA+ll+ +++l+i++  +       v+++DPvf++ D +lL++l
  CDO70712.1 14 ILCLGLGSPASSRDARAQLAFLLAACDDLSIATLVHssqdrarVSVFDPVFSDKDLQLLAQL 75
                89******************************9988999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1060.11
//
Query:       CDO70713.1  [L=188]
Description: hypothetical protein BN946_scf184798.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-22   78.5   0.2    7.3e-22   77.9   0.2    1.3  1  Pre-PUA   Pre-PUA-like domain
    5.4e-16   58.3   0.0    7.9e-16   57.8   0.0    1.3  1  PUA       PUA domain
  ------ inclusion threshold ------
      0.034   14.5   0.2      0.066   13.5   0.2    1.5  1  DUF1947   Domain of unknown function (DUF1947)


Domain annotation for each model (and alignments):
>> Pre-PUA  Pre-PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.2   1.2e-25   7.3e-22       1      87 []       5      93 ..       5      93 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.2e-25
     Pre-PUA  1 fkkkfkvksntqlksSdrrkLraklleqfpslseeqleellpkkeevkvvklq...gehvelyvvdgeplffqdregellPtlytlwkyP 87
                f+ + +v+ +  +ksS++r++r++ll+q++    e+le+++pkke++          +h+++y+ +geplffq+ +g+l+Ptl++l+kyP
  CDO70713.1  5 FQPSSDVSGQVSVKSSVQRAIRSSLLNQWKIN-PETLEQIWPKKEPIXXXXXXxxyPDHISIYTLHGEPLFFQHFDGPLYPTLKLLHKYP 93
                78899************************999.************999988888889********************************9 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.3e-19   7.9e-16       1      73 [.      97     177 ..      97     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.3e-19
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT-.......-TTSEEEEEETT.SCEEEEEEESS-HHHHHHHCTSEEEEEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdf.......eegdvVaivded.gelvavGlanysseelakikggksveierv 73 
                 ++v +d+gA+++ll ga+ ++pG+++++g +        e++ Vai++e+ +++ ++Gl+++s+e+++k+++g++ve+  +
  CDO70713.1  97 PTVRIDRGAIRFLLAGAHMMCPGLTSAGGYLppadaalPENTPVAIHAEGkEHAAGIGLTKMSTEDIKKVNKGVGVETVTY 177
                 6899*********************************************769************************98766 PP

>> DUF1947  Domain of unknown function (DUF1947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.1e-05     0.066      39      65 ..      63      91 ..      59      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                -EEEEETTEEEEEE..SSSEEE-HHHHHH CS
     DUF1947 39 eklYlingvpilfe..eekliPtLklLlk 65
                 ++Y   g p++f+  ++ l+PtLklL k
  CDO70713.1 63 ISIYTLHGEPLFFQhfDGPLYPTLKLLHK 91
                689**********9999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 1259.21
//
Query:       CDO70714.1  [L=1074]
Description: hypothetical protein BN946_scf184798.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.2e-134  446.4   0.2   5.2e-134  446.4   0.2    3.5  3  CRM1_C         CRM1 C terminal
    2.4e-42  144.5   8.7    2.2e-41  141.4   6.4    3.5  3  Xpo1           Exportin 1-like protein
    9.5e-34  114.9   4.7    2.6e-33  113.5   4.7    1.8  1  CRM1_repeat_2  CRM1 / Exportin repeat 2
    7.1e-32  109.3   2.8    2.6e-31  107.5   1.3    2.9  2  CRM1_repeat_3  CRM1 / Exportin repeat 3
    3.7e-19   67.9   2.6    3.7e-19   67.9   2.6    2.4  2  CRM1_repeat    Chromosome region maintenance or exportin repe
    2.9e-13   49.5   0.0    1.3e-12   47.4   0.0    2.3  1  IBN_N          Importin-beta N-terminal domain
  ------ inclusion threshold ------
      0.011   15.7   0.1       0.17   11.8   0.0    3.2  2  DUF3385        Domain of unknown function (DUF3385)
      0.075   13.6   1.3        7.6    7.2   0.0    3.9  3  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
       0.11   12.4   0.2         16    5.5   0.0    3.7  2  UME            UME (NUC010) domain
        1.6    9.1   4.8         18    5.7   0.2    3.6  3  DUF2935        Domain of unknown function (DUF2935)


Domain annotation for each model (and alignments):
>> CRM1_C  CRM1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.38   6.9e+02     115     146 ..     226     258 ..     148     263 .. 0.61
   2 ?    1.4   0.1     0.079   1.4e+02     132     160 ..     547     575 ..     536     638 .. 0.81
   3 !  446.4   0.2  2.9e-137  5.2e-134       1     321 []     706    1030 ..     706    1030 .. 1.00

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.38
      CRM1_C 115 leavfectl.dmikkdfeeyPehrveFfellra 146
                 l ++fe+t+ d+  + f e Pe+r   ++ l +
  CDO70714.1 226 LGYIFETTIiDLLLNRFLEAPEFRNVTLKCLAE 258
                 567777774377777777777777766666655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.079
      CRM1_C 132 eyPehrveFfellrainkkcfkallklps 160
                 +yP + + ++++l+ +++k f+ +++ ++
  CDO70714.1 547 QYPRFLKAHWKFLKTVVNKLFEFMHETHE 575
                 7999*****************99988665 PP

  == domain 3  score: 446.4 bits;  conditional E-value: 2.9e-137
      CRM1_C    1 QlgkiyldllklyklvseliseavaaegeiatktpkvrllrtvkkeiLkLietyiekaedleevlnnlveplleavLvdYkknvpeardaevLsllt 97  
                  Q+g+i+ld+l lyk+vs +ise+va+eg iatktpkvr+lrt+kkeiLkL+et+i+k+edle+v+nn+++p+l+a+L dY++nvp ardaevL++++
  CDO70714.1  706 QIGRIFLDMLGLYKAVSGIISETVAREGLIATKTPKVRQLRTIKKEILKLMETFIKKSEDLETVNNNFMPPFLDAILGDYSRNVPAARDAEVLNVMA 802 
                  9************************************************************************************************ PP

      CRM1_C   98 tlveklenlisdevpkileavfectldmikkdfeeyPehrveFfellrainkkcfkallklpseqfklvidsivwafkHterdvaetgLnillellk 194 
                  t++ +l+ l+ ++vp il+avfe+tl+mi++df e+Pehrv Ff+llrain +cf+all++p++qfkl++dsi+wa+kHt+rd+aetgLn++le+++
  CDO70714.1  803 TIIGRLGPLLIPQVPAILDAVFEPTLNMINQDFAEFPEHRVGFFKLLRAINLNCFPALLNIPPPQFKLFMDSIIWAIKHTMRDIAETGLNLCLEVVN 899 
                  ************************************************************************************************* PP

      CRM1_C  195 nveekkkeaanqFyknyylsllkevlkvltDtdhksgfklqaelLaklirlvesgsikvpllee....eqvtsnkvflseyvvellsnaFpnlsqkq 287 
                  n+++ ++ +an+F+++y+ls+++++++vltDtdhksgfklq++lLa++++lve+++i+vpl+++    +++ +n+ fl+ey+++ll++aFp+++++q
  CDO70714.1  900 NFASADPAVANAFFQQYFLSIMQDIFYVLTDTDHKSGFKLQSLLLARMFQLVETNQITVPLFDPatvpDPSITNSIFLREYTANLLKSAFPHVQTSQ 996 
                  ****************************************************************9999999************************** PP

      CRM1_C  288 veafvvglfelandlkkfkehlrDflislkefsg 321 
                  ++afvv l e+++d ++fk +lrDfl++lkefsg
  CDO70714.1  997 IQAFVVCLGEFHSDINRFKLALRDFLVQLKEFSG 1030
                  ********************************86 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   6.4   1.2e-44   2.2e-41       2     149 .]     112     256 ..     111     256 .. 0.97
   2 ?   -3.3   0.0       4.9   8.7e+03     102     123 ..     747     769 ..     736     783 .. 0.60
   3 ?    0.6   0.0       0.3   5.3e+02      71     109 ..     878     914 ..     873     924 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 1.2e-44
                 HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
        Xpo1   2 kflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskkqs 100
                 + ++nkl++al+++++qe+p+nWp+f+++l++++++++s +e+++ iLk+l+eEi+d+s ++++q + ++lk++++ ++++i++l+++ile+ q+    
  CDO70714.1 112 RTYLNKLNLALVQILKQEWPHNWPTFIPELVESSKTNLSLCENNMVILKLLSEEIFDYSAEQMTQAKVKNLKNQMCGEFSEIFKLCSEILEEAQK---- 206
                 5689****************************************************************************************997.... PP

                 HHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHH.HHHCCSCCCHHHHHHHH CS
        Xpo1 101 selveavLkclsswvswidiglivnnpllnll.fqlLsdpelreaavecL 149
                 ++l++a+L++l ++++wi++g+i+++++++ll  ++L+ pe+r+ +++cL
  CDO70714.1 207 TSLIRATLETLLRFLNWIPLGYIFETTIIDLLlNRFLEAPEFRNVTLKCL 256
                 89*****************************967899************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHHTT.TS-HHHH CS
        Xpo1 102 elveavLkclsswvs.widigli 123
                  + +++Lk ++ +++   d++++
  CDO70714.1 747 TIKKEILKLMETFIKkSEDLETV 769
                 44566666666666633344443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH CS
        Xpo1  71 dlkdllrsnvqkilelllqileqsqskkqsselveavLk 109
                 ++k ++r+ +++ l+l+l+++++  s++  + +++a ++
  CDO70714.1 878 AIKHTMRDIAETGLNLCLEVVNNFASAD--PAVANAFFQ 914
                 58999******************99987..888888765 PP

>> CRM1_repeat_2  CRM1 / Exportin repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   4.7   1.4e-36   2.6e-33       1      68 []     402     469 ..     402     469 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.4e-36
  CRM1_repeat_2   1 rkqlYkeiLsqlrlvlierMakPeEVliveneeGeivretvkdtdtialYktmretLvyLthLdvedt 68 
                    rk++Y+++Ls+lrlv+ie+M+kPeEVliveneeGeivre++k++dti lYk+mre+LvyLthLdv+dt
     CDO70714.1 402 RKNIYSDVLSNLRLVVIEKMVKPEEVLIVENEEGEIVREFMKESDTIVLYKQMRELLVYLTHLDVNDT 469
                    789***************************************************************98 PP

>> CRM1_repeat_3  CRM1 / Exportin repeat 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   1.3   1.4e-34   2.6e-31       1      51 []     482     532 ..     482     532 .. 0.99
   2 ?   -2.6   0.0       3.5   6.4e+03      31      46 ..     557     572 ..     556     575 .. 0.82

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 1.4e-34
  CRM1_repeat_3   1 dgseWswnnlnkLCWAiGSISgamseedEkrfLvtvikdLLnLceekrgkd 51 
                    dgseWsw+nln+LCWAiGSISgam+ee+EkrfLvtvikdLL Lce+krgkd
     CDO70714.1 482 DGSEWSWQNLNTLCWAIGSISGAMNEEQEKRFLVTVIKDLLGLCEMKRGKD 532
                    79***********************************************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
  CRM1_repeat_3  31 rfLvtvikdLLnLcee 46 
                    +fL tv+++L++++ e
     CDO70714.1 557 KFLKTVVNKLFEFMHE 572
                    6999******998765 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.32   5.7e+02      20      25 ..     192     197 ..     191     200 .. 0.84
   2 !   67.9   2.6   2.1e-22   3.7e-19       2      37 .]     334     369 ..     333     369 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.32
                  HHHHHH CS
  CRM1_repeat  20 EiFKIC 25 
                  EiFK C
   CDO70714.1 192 EIFKLC 197
                  9***** PP

  == domain 2  score: 67.9 bits;  conditional E-value: 2.1e-22
                  HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH CS
  CRM1_repeat   2 allaalqYLvkISeVedrEiFKICLEYWnkLvseLY 37 
                  +ll+a+ Y+vkIS+V++rEiFKICLEYW kLv+eLY
   CDO70714.1 334 VLLNAHLYMVKISQVDEREIFKICLEYWLKLVAELY 369
                  79*********************************9 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   7.4e-16   1.3e-12       1      72 [.      34      98 ..      34     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 7.4e-16
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnll 72
                A++ L  ++ +p+++ ++  il++s+ + +++++++++L++lit +W+      slp+ +++ Irn+++   
  CDO70714.1 34 AQQVLTSFQDSPDAWTRVPDILEHSSFP-QTKYIGLQILEKLITTRWK------SLPEGQRQGIRNFVVGIT 98
                899*************************.*******************......*************99765 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.4e-05      0.17      73     150 ..     503     582 ..     455     592 .. 0.80
   2 ?   -2.1   0.0       1.7   3.1e+03     103     133 ..     793     823 ..     739     838 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.4e-05
     DUF3385  73 vglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifkt..lglkc.vpfLdqiipallsvirtteesnlrefll 150
                   + + +e  +  +vi+ Ll + + +  ++++a v + im+i+ +    lk   +fL+ ++++l++ +++t+e  ++++  
  CDO70714.1 503 GAMNEEQEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYIVGQypRFLKAhWKFLKTVVNKLFEFMHETHE-GVQDMAC 582
                 3456677999999******************************984433555588**************9988.7776655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
     DUF3385 103 hhaavveaimnifktlglkcvpfLdqiipal 133
                   a+v++++ +i+  lg   +p ++ i+ a+
  CDO70714.1 793 RDAEVLNVMATIIGRLGPLLIPQVPAILDAV 823
                 3455666666666666666666555555555 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.32   5.8e+02      46      82 ..     169     206 ..     157     222 .. 0.71
   2 ?    7.2   0.0    0.0042       7.6      23      80 ..     557     622 ..     550     633 .. 0.80
   3 ?    0.1   0.0      0.68   1.2e+03      17      42 ..     908     934 ..     896     945 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.32
  Vac14_Fab1_bd  46 yacEslyn.iakvakgevlkllneifdalvklvaDsde 82 
                    y++E +    +k +k+++   ++eif+  ++++ ++++
     CDO70714.1 169 YSAEQMTQaKVKNLKNQMCGEFSEIFKLCSEILEEAQK 206
                    55555554147999*************99988766544 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0042
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk........llneifdalvklvaDs 80 
                    ++l+++v+ +++ ++++ + v   ac+++  ia++++ ++++        ++ ei+ +l +++ D 
     CDO70714.1 557 KFLKTVVNKLFEFMHETHEGVQDMACDTFIKIAQKCRRHFVMqqsgesepFVDEILRMLHRITVDL 622
                    799*********************************999876344444445667777777777765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.68
  Vac14_Fab1_bd  17 lekk.ikeyleeivkpvlkcfsDkdsr 42 
                    ++++  ++y+ +i++ ++ +++D+d++
     CDO70714.1 908 VANAfFQQYFLSIMQDIFYVLTDTDHK 934
                    555557888889999999999999987 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.075   1.3e+02       7      78 ..     156     259 ..     150     281 .. 0.57
   2 ?    5.5   0.0    0.0091        16       1      41 [.     912     952 ..     912     999 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.075
         UME   7 lgiltrlseklndshgkkslaekkraika.....leeliklagssissalp...........................qimacLqsaleidelrsaals 73 
                 + il+ lse++ d + ++ ++ k +++k       +e++kl+++ ++ a                              i  +L   le +e+r+++l+
  CDO70714.1 156 MVILKLLSEEIFDYSAEQMTQAKVKNLKNqmcgeFSEIFKLCSEILEEAQKtsliratletllrflnwiplgyifettIIDLLLNRFLEAPEFRNVTLK 254
                 556666666666666666666666665532222255666666666444444333333333333333333333333332234456666777788888888 PP

         UME  74 vWatl 78 
                 + a+ 
  CDO70714.1 255 CLAEI 259
                 88765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0091
         UME   1 fLqqhilgiltrlseklndshgkkslaekkraikaleelik 41 
                 f+qq++l i++++  +l d+++k   + +   +  + +l++
  CDO70714.1 912 FFQQYFLSIMQDIFYVLTDTDHKSGFKLQSLLLARMFQLVE 952
                 89*******************99777777777766666655 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.081   1.5e+02      58     107 ..     149     218 ..     104     221 .. 0.77
   2 ?   -1.8   0.0       2.1   3.8e+03      73     100 ..     557     586 ..     533     598 .. 0.62
   3 ?    5.7   0.2    0.0099        18      29      84 ..     647     761 ..     579     774 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.081
     DUF2935  58 v....................rasseleeavakLneealkltreliqFkkellekvlscklfsiiyplli 107
                 +                    +a+++++ +v++L ++++ +  e+ ++ +e+le+ ++  l   +  +l+
  CDO70714.1 149 LslcennmvilkllseeifdySAEQMTQAKVKNLKNQMCGEFSEIFKLCSEILEEAQKTSLIRATLETLL 218
                 3444555555677777777778899999***************************999988887777776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
     DUF2935  73 eealkltreliqFkkellekvls..cklfs 100
                 +    ++++l +F +e+ e+v++  c  f 
  CDO70714.1 557 KFLKTVVNKLFEFMHETHEGVQDmaCDTFI 586
                 555567888888888888888763344444 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0099
     DUF2935  29 ekdlikeakef.kkeFekllaeavelseglv..........................................................rasseleeav 68 
                 +++li+++ e+ +++++ l+a+a +  ++l                                                            +++ +++++
  CDO70714.1 647 QEKLIAKLMELpNNAWDSLMAQAAQNVDVLSsldnikilsnvlktnvaactsigtfylpqigrifldmlglykavsgiisetvaregliATKTPKVRQL 745
                 55555555555455566666666443333336666666666666666666666666666666666666666666666666666666666999******* PP

     DUF2935  69 akLneealkltreliq 84 
                 +++ +e+lkl++ +i+
  CDO70714.1 746 RTIKKEILKLMETFIK 761
                 *************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 6411.85
//
Query:       CDO70715.1  [L=179]
Description: hypothetical protein BN946_scf184798.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-19   68.5   0.1    1.1e-18   67.4   0.0    1.6  2  Spc24      Spc24 subunit of Ndc80
  ------ inclusion threshold ------
      0.011   15.7   0.7       0.17   11.9   0.1    2.1  2  YscO-like  YscO-like protein
      0.054   12.8   0.8      0.072   12.4   0.8    1.1  1  FAM76      FAM76 protein
       0.33   11.5   6.8       0.69   10.4   6.8    1.6  1  APG6_N     Apg6 coiled-coil region
       0.37   11.2   2.7       0.98    9.8   2.7    1.8  1  DUF4200    Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.98   3.5e+03      30      37 ..      35      42 ..      12      66 .. 0.55
   2 !   67.4   0.0   3.1e-22   1.1e-18       2     103 ..      72     174 ..      71     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.98
       Spc24 30 lkeeleel 37
                 ++++++l
  CDO70715.1 35 AHAKVKQL 42
                22222222 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 3.1e-22
       Spc24   2 ldnekfriakelsdleselesleselaelkeeleeleeeseekeservedetllklklYrsLGielekd....vnkvlirnkekgdvnvlnlddklsef 96 
                 ld +++++ak+++d+es+l   e+ela+lkee + le+++ + e+e+  d+t+l+l +Y+ LG+e+  d    ++k+l+r ++  dv+++ +d++ s+ 
  CDO70715.1  72 LDATRLSLAKAINDAESALAGKEAELARLKEETRALESSDPAAEHEL--DATALRLAMYKGLGFEPIVDkdgrITKMLVRAESG-DVHCVMFDQNKSDD 167
                 8999**************************************55554..*****************6666699*******9987.8************* PP

       Spc24  97 fianyiW 103
                  +a+ +W
  CDO70715.1 168 EYAQLLW 174
                 ******* PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.039   1.4e+02      37      64 ..      20      47 ..       9      59 .. 0.60
   2 ?   11.9   0.1   4.7e-05      0.17      14      72 ..      80     136 ..      72     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.039
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like 37 klrkleeerdkvkkhkkaKvaqlreeld 64
                +++  ++ r +  ++ +aKv+ql   l+
  CDO70715.1 20 QMATTHDLRHRDLHDAHAKVKQLARALE 47
                4555555555555566666666555444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH CS
   YscO-like  14 krrveeAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaKvaqlreeldkGttsdki 72 
                 ++++++AE +++ k  +L++ ke+ r le+  d + +h+ +  ++lr  + kG + + i
  CDO70715.1  80 AKAINDAESALAGKEAELARLKEETRALESS-DPAAEHELD-ATALRLAMYKGLGFEPI 136
                 5899********************9999876.666666665.47899999999887765 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8     2e-05     0.072     172     262 ..      23     110 ..      10     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
       FAM76 172 skkkskkhkkrssrlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekeke 262
                  ++  ++ + ++ + +v +l    +a e+++ ++++ s+ ++  +h   +++L  +  sl k ++  +++l  k+ +++ lk e+   e++
  CDO70715.1  23 TTHDLRHRDLHDAHAKVKQLA---RALESARASATRPSTIPSAEEHAALMNDLDATRLSLAKAINDAESALAGKEAELARLKEETRALESS 110
                 222333333333344444444...3333334444455889999***************************************999888765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.8   0.00019      0.69      16     101 ..      30     114 ..      18     129 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeek..qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerf 101
                 + l++a ++ +++ + l+  +++++ +++  + ee+++l   + +l++++ +l + ++++e++ +  eaela l+ee++ale    + 
  CDO70715.1  30 RDLHDAHAKVKQLARALESARASATRPSTipSAEEHAAL---MNDLDATRLSLAKAINDAESALAGKEAELARLKEETRALESSDPAA 114
                 667888888888999999988887777645533333333...4444444444444455555555555555555555555554443333 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.7   0.00027      0.98      47     104 ..      62     119 ..      12     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00027
     DUF4200  47 llkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekle 104
                 +++    +++ da r    k +++ + +   keae+++lk+e+ +l+s     e++l+
  CDO70715.1  62 AEEHAALMNDLDATRLSLAKAINDAESALAGKEAELARLKEETRALESSDPAAEHELD 119
                 667778899**************************************87776666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.32s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1149.44
//
Query:       CDO70716.1  [L=825]
Description: hypothetical protein BN946_scf184798.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-21   75.4   2.3    2.8e-21   75.4   2.3    2.4  2  CAF1A     Chromatin assembly factor 1 subunit A
  ------ inclusion threshold ------
        8.8    6.1   7.7          1    9.2   1.3    2.4  2  PCRF      PCRF domain
        9.7    6.5  13.7         11    6.4   3.4    2.9  3  OmpH      Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.8         3   1.8e+04      63      69 ..     416     422 ..     403     430 .. 0.46
   2 !   75.4   2.3   4.7e-25   2.8e-21       1      74 [.     509     582 ..     509     584 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3
       CAF1A  63 deeeeee 69 
                 d++ +e+
  CDO70716.1 416 DNKVDED 422
                 2111111 PP

  == domain 2  score: 75.4 bits;  conditional E-value: 4.7e-25
       CAF1A   1 KllqFyedvRPpYyGTwtkkskvvgarnPfskdekeldYdyDSdaEWeeeeeeegedleseedeeeeeedddee 74 
                 K++ F ed+RP+Y+GT+t++s+ vg+r+Pf++d   +dY yDS  EW ee+ ++++d+ + + ee++ ++ +e+
  CDO70716.1 509 KVFVFAEDARPGYFGTFTRSSREVGPRTPFARDIVAVDYGYDSGLEWAEEDTGDADDVVEGDGEEDDADEGEED 582
                 8999**********************************************999******999988888777665 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.3   0.00017         1      34      99 ..      36     113 ..      19     121 .. 0.77
   2 ?   -0.8   0.7       0.2   1.2e+03      21      55 ..     291     325 ..     261     347 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
                 THHHHHHHHHHHHHTTTHHH...HT.........-S-..-GGG.......THHHHHHHHHH..HHHHHT-..SSSTTS CS
        PCRF  34 leeivealeeleealedleeakelle.....edeelaelaeee.......leelekeleeleeelkklLlpkdendek 99 
                 l++ + ++e+++e+++++ + +e+le     +++ l ++ ee        ++e +k+l++l++++++ Llp   +de+
  CDO70716.1  36 LKQKILSFEKMSETMQEIVKFREMLEqrleaKEPPLSAIPEEHkpviaklVHESDKNLQALSKHVQQQLLPAVDEDEE 113
                 6777888899999999999999999334545556666665553556666799*******************9888876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
                 GGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH.. CS
        PCRF  21 qekakklskelaeleeivealeeleealedleeak 55 
                 +++a++ +ke + le+ ++++e+ +++++  ++ +
  CDO70716.1 291 KKSAERAAKEKELLEKKAAKAEREKREQAAQAKSR 325
                 33344444444444444444444433333333333 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7    0.0021        12      16     112 ..      45     140 ..      36     141 .. 0.52
   2 ?   -3.3   0.0       1.7     1e+04      70      83 ..     179     191 ..     172     215 .. 0.59
   3 ?    6.4   3.4    0.0018        11      52     103 ..     291     340 ..     259     349 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka.qelqkkqqellkpildkinkaikevakekgyd 112
                 ++ + ++++ k ++ l++ leake  l +  ee +   +kl   e  + lq++ + +qq++  +  ++ +++  + + p l  +++aik vak+ +y 
  CDO70716.1  45 KMSETMQEIVKFREMLEQRLEAKEPPLSAIPEEHKPVIAKL-VHESDKNLQALSKHVQQQLLPAVdEDEEENLHASVLP-LHAVEAAIKSVAKRVNYG 140
                 44444555555555555555555555555555554222222.3344444666666666633222232222222223334.699**********99986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHH CS
        OmpH  70 qelqqkqqqkaqel 83 
                 +++++ +qq++++ 
  CDO70716.1 179 NRFRE-RQQAKEDA 191
                 44555.33333332 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0018
                 HTTTS.-HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  52 kakklekeekeqe.lqkkeqelqqkqqqkaqelqkkqqellkpildkinkaik 103
                 k+++ e+++ke+e l+kk ++ ++  ++++q  q+k++ l++++  k++ a +
  CDO70716.1 291 KKSA-ERAAKEKElLEKKAAKAER--EKREQAAQAKSRSLMASFFGKAKPAST 340
                 2222.2667777766666666666..333377777777788888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1592  (0.0887947); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 4952.40
//
Query:       CDO70717.1  [L=374]
Description: hypothetical protein BN946_scf184798.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-15   56.3   0.0    7.7e-15   55.5   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.3e-11   43.8   0.0    1.3e-09   38.0   0.0    2.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    1.2e-09   38.4   0.0    4.1e-09   36.7   0.0    1.9  1  Rep_fac_C        Replication factor C C-terminal domain
    3.8e-07   30.5   0.0      8e-06   26.2   0.0    2.6  2  AAA_22           AAA domain
      5e-07   29.8   0.0    1.1e-06   28.6   0.0    1.7  1  Rad17            Rad17 P-loop domain
    1.2e-05   25.8   0.1    9.6e-05   22.8   0.1    2.4  1  AAA_16           AAA ATPase domain
    1.5e-05   25.3   0.0    3.8e-05   23.9   0.0    1.7  1  AAA_assoc_2      AAA C-terminal domain
    6.4e-05   22.9   0.0    0.00011   22.1   0.0    1.4  1  AAA_11           AAA domain
     0.0004   20.2   0.0    0.00094   19.0   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00055   19.7   0.0     0.0014   18.4   0.0    1.6  1  AAA_30           AAA domain
    0.00073   19.5   0.0     0.0021   18.0   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0012   18.6   0.0     0.0029   17.4   0.0    1.5  1  AAA_24           AAA domain
     0.0024   17.4   0.0     0.0039   16.7   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
     0.0039   17.2   0.0       0.02   14.9   0.0    2.1  1  ResIII           Type III restriction enzyme, res subunit
     0.0067   16.5   0.0      0.012   15.6   0.0    1.4  1  AAA_14           AAA domain
     0.0074   16.6   0.0      0.056   13.8   0.0    2.2  1  AAA_19           AAA domain
     0.0095   15.3   0.0      0.094   12.1   0.0    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.058   13.6   0.0    2.1  2  AAA_28           AAA domain
      0.014   14.7   0.0      0.023   14.0   0.0    1.3  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.035   13.9   0.1       0.53   10.0   0.0    2.5  3  DEAD             DEAD/DEAH box helicase
      0.044   12.9   0.0      0.067   12.4   0.0    1.2  1  DUF815           Protein of unknown function (DUF815)
      0.047   13.8   0.0      0.085   13.0   0.0    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.055   13.3   0.1        2.3    8.1   0.1    2.3  2  DUF881           Bacterial protein of unknown function (DUF88
      0.066   13.0   0.0       0.11   12.2   0.0    1.3  1  DNA_pol3_delta   DNA polymerase III, delta subunit
      0.075   12.5   0.0        2.3    7.6   0.0    2.2  2  PhoH             PhoH-like protein
      0.098   11.7   0.0       0.13   11.3   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.13   12.8   0.0       0.19   12.2   0.0    1.2  1  AAA_23           AAA domain
       0.13   12.8   0.0       0.26   11.8   0.0    1.6  1  AAA_18           AAA domain
        0.2   12.1   0.0       0.44   11.0   0.0    1.6  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.2e-17   7.7e-15       1     130 [.      58     188 ..      58     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.2e-17
                 EEEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS........TS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   1 vllyGppGtGKTllakavakel......gvefleisgsell.skyvgesekkirelfkeakeka........kp.silfiDEidalaksrsgseseeee 83 
                 +l+yGppGtGKT+++ a+a++l       +++le+++s+ +  ++v e+ k+++    +a++ a         p +i+++DE+d+++++          
  CDO70717.1  58 MLFYGPPGTGKTSTILALARQLfgpdnfRSRVLELNASDERgISIVREKIKNFARQTPRAQAVAsdgktypcPPyKIIILDEADSMTQDA--------- 147
                 89*******************8766655699**********6667777777777777677666689999998778***********9888......... PP

                 HHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  84 rvvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                   +++L + ++ + +    + +++++n++ ++ ++l  +R+++  + 
  CDO70717.1 148 --QAALRRIMELYAR---ITRFCLVCNYVTRIIEPLA-SRCSKFRFK 188
                 ..***********99...478****************.999887665 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   2.1e-12   1.3e-09       2     162 ..      39     190 ..      38     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.1e-12
  DNA_pol3_delta2   2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieel 95 
                      qe+++ +l+k l s +l h +Lf+G+ g+gk ++ l+la++l+  ++ ++          +++  +   + +++++ k  +   ++ r      
       CDO70717.1  39 QEHTVAVLRKTLTSTNLPH-MLFYGPPGTGKTSTILALARQLFGPDNFRS-------RVLELNASDERGISIVREKIK--NFARQTPRAQAVAS 122
                      7889999**********99.79*********************9888755.......556666666667777777666..55555555444444 PP

  DNA_pol3_delta2  96 srkpre.skkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                        k++    +kiii+++a+ mt+ A+ al +++E   + + f L+ +  +++++++ SRc +++f+pl
       CDO70717.1 123 DGKTYPcPPYKIIILDEADSMTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPL 190
                      444444378*********************************************************97 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   6.7e-12   4.1e-09      16      84 ..     296     363 ..     291     367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 6.7e-12
                 T-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHH CS
   Rep_fac_C  16 gdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsa 84 
                 + fe ++ k++  ++ +Gysa+++++qlh+ v+ + +l+ +qk +    ++e++k l +Ga+e+l ++ 
  CDO70717.1 296 KGFEGVKRKVK-GVIREGYSASQLISQLHDHVVAHPTLTPRQKTRCALAFAEADKALCDGADEELWILE 363
                 66888999995.***********************77**********99**************997765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.3e-08     8e-06       7     118 ..      57     157 ..      53     172 .. 0.82
   2 ?    0.9   0.0       0.8   4.9e+02      70     103 ..     307     351 ..     277     368 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.3e-08
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav..ielliiDEaqhl 103
                 +++ +G++GtGKT ++  l++ql     +++ r++v++ +++ + + + +++++ ++  +   a         +a++   +++     +++i+DEa+ +
  CDO70717.1  57 HMLFYGPPGTGKTSTILALARQL---FGPDNFRSRVLELNASDERGISIVREKIKNFARQTPRA---------QAVASDGKTYPCppYKIIILDEADSM 143
                 6789******************9...566669*************9999999999888854444.........8888888888889889********** PP

      AAA_22 104 rseealeeLrsllnl 118
                  +++a   Lr++++l
  CDO70717.1 144 -TQDAQAALRRIMEL 157
                 .77777777666664 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.8
      AAA_22  70 a...erlsseellealeqalrarav.......ielliiDEaqh.l 103
                 +   e+ s ++l+++l++++ a+ +       + +l   Ea++ l
  CDO70717.1 307 GvirEGYSASQLISQLHDHVVAHPTltprqktRCALAFAEADKaL 351
                 1444588999**********9999988888877777777777755 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.9e-09   1.1e-06       5      69 ..      20      79 ..      16     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.9e-09
       Rad17  5 enelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskel 69
                + ++W+eky+P++ ++++   + +  +++ l ++ L++      L  GP+G gk+ ++  L+++l
  CDO70717.1 20 QHQPWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLPHM-----LFYGPPGTGKTSTILALARQL 79
                679**********************************98.....99**************99876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.6e-07   9.6e-05      15     116 ..      45     151 ..      38     242 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-07
      AAA_16  15 alervrsgrp.elvllsGesGvGKsslvrellralekd................ggiflrgkcdqlesaipysalaqalareellrqlldeaesaelea 96 
                 +l+++ +++  + +l++G++G+GK+s + +l+r+l +                 g+  +r+k + +         a++       ++++++ ++   ++
  CDO70717.1  45 VLRKTLTSTNlPHMLFYGPPGTGKTSTILALARQLFGPdnfrsrvlelnasderGISIVREKIKNF---------ARQT---PRAQAVASDGKTYPCPP 131
                 455455554459*********************999997774444444444432222233333333.........3333...23444444444455555 PP

      AAA_16  97 wrekleealaavpelagaea 116
                 ++  +++++ +  ++a a+ 
  CDO70717.1 132 YKIIILDEADSMTQDAQAAL 151
                 55555555553333333333 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   6.2e-08   3.8e-05       3      55 ..     206     258 ..     204     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 6.2e-08
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeakegkieitledleeal 55 
                  +++ +++++++al+++++GD R+a+++L+ a + a a++ +++it  d++e++
   CDO70717.1 206 ENVPVTPETVDALISTSQGDLRRAITYLQSASRLALASTPPTDITPRDIQEIA 258
                  578999*****************************999999*****9999975 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.8e-07   0.00011      13      43 ..      49      87 ..      37     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.8e-07
      AAA_11 13 alsese..itliqGPPGtgKTktivellsqll......s 43
                +l++++    l+ GPPGtgKT+ti++l +ql       s
  CDO70717.1 49 TLTSTNlpHMLFYGPPGTGKTSTILALARQLFgpdnfrS 87
                44444445589*******************965444441 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.5e-06   0.00094       2      57 ..      29      79 ..      28      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-06
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57
                rPk++++  +qe+  + l+ ++++     ++l h+l+yGpPG Gkt+    +a++l
  CDO70717.1 29 RPKTIDDVSAQEHTVAVLRKTLTS-----TNLPHMLFYGPPGTGKTSTILALARQL 79
                899999999999887777766655.....5799*************9888777765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.2e-06    0.0014      10     114 ..      46     157 ..      38     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.2e-06
      AAA_30  10 vealltsgdr.vavltGpAGtGKttalkal.reaweaag..grvi.glAptgkaAkvLaeelgieastiakllkrlk..grarlepgtllivDEagmvd 101
                 ++++lts+++  ++  Gp+GtGKt ++ al r+++  ++   rv+ + A+ ++    ++e++   a+ + +        ++  + p +++i DEa  + 
  CDO70717.1  46 LRKTLTSTNLpHMLFYGPPGTGKTSTILALaRQLFGPDNfrSRVLeLNASDERGISIVREKIKNFARQTPRAQAVASdgKTYPCPPYKIIILDEADSMT 144
                 5666666665256779*******9777666478887776554444266888888888999998777766666544446555667788********9998 PP

      AAA_30 102 tkqlaallkaaek 114
                 ++  aal +++e 
  CDO70717.1 145 QDAQAALRRIMEL 157
                 7777777666654 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.4e-06    0.0021       1      90 [.      57     156 ..      57     163 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.4e-06
                 EEEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B--...........--------.........G-SEEEEESGGG--HHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar.........egeilvlDEveraesevlns 84 
                 ++l  GppGtgK++ +  la+ l    n +  +  l+++ ++   + r +ik   ++t + + +                 +i++lDE + + ++++++
  CDO70717.1  57 HMLFYGPPGTGKTSTILALARQLfgpdNFRSRVLELNASDERGISIVREKIKnfARQTPRAQAV-----AsdgktypcpPYKIIILDEADSMTQDAQAA 150
                 6899*******************9*775555555555533222222222232333333333222.....233447999899****************** PP

                 HHHHHH CS
       AAA_5  85 Llslle 90 
                 L +++e
  CDO70717.1 151 LRRIME 156
                 *99987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.6e-06    0.0029       5      86 ..      58     152 ..      55     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.6e-06
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...............aaeladyktlviDtideleelclaevi 86 
                 +l yGp+g+GKT++++ l  + lf   +  ++ l+ +   d +++  ++++++ +                   ++yk++++D +d + + + a ++
  CDO70717.1  58 MLFYGPPGTGKTSTILAL-ARQLFGPDNFRSRVLELNA-SDERGISIVREKIKNFarqtpraqavasdgkTYPCPPYKIIILDEADSMTQDAQAALR 152
                 789***************.7777765555554444444.34556666777777767777777777878866666889*********99998888765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.3e-06    0.0039      28      72 ..      49      95 ..      35     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.3e-06
       AAA_7 28 lllknk.kpvllvGptGtGKtviikdllkkld.kekylsltinfsaq 72
                +l + +  ++l++Gp GtGKt++i  l ++l  ++++ s +++++a+
  CDO70717.1 49 TLTSTNlPHMLFYGPPGTGKTSTILALARQLFgPDNFRSRVLELNAS 95
                44444415799***************888875589999998888875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.2e-05      0.02       6      51 ..      37      82 ..      32     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
                HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkk 51
                + Qe+ +  l+++l+s++  ++l+  + GtGKT ++++l+++l+  
  CDO70717.1 37 SAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 82
                57999999999999999999**********************9974 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     2e-05     0.012       6      93 ..      59     161 ..      54     192 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-05
      AAA_14   6 vitGaRrvGKTtllkqlikell...vkkesilyinldderdkkladpekllelilek.lke............ekktylflDEiqev.pewekalkslv 87 
                 +  G+  +GKT  +  l+++l+     ++++l++n  der  ++  + k+ ++ ++    +            +  ++++lDE+  + ++++ al++++
  CDO70717.1  59 LFYGPPGTGKTSTILALARQLFgpdNFRSRVLELNASDERGISIVRE-KIKNFARQTpR-AqavasdgktypcPPYKIIILDEADSMtQDAQAALRRIM 155
                 5679999**************99987789999999999998544433.23333333221.123445455566756677******8663789*******9 PP

      AAA_14  88 degknl 93 
                 + + ++
  CDO70717.1 156 ELYARI 161
                 977554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.1e-05     0.056      10      63 ..      55     108 ..      47     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.1e-05
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerla 63 
                  +++l  ++pGtGKT ++ +  + l    +   + + l a  +r  + +re+++
  CDO70717.1  55 LPHMLFYGPPGTGKTSTILALARQLFGPDNFRSRVLELNASDERGISIVREKIK 108
                 5689999***********999998877777666666666666777777777664 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015     0.094       4      43 ..      35      76 ..      32     120 .. 0.68
   2 ?    0.9   0.0       0.4   2.5e+02     109     145 ..     134     169 ..     131     184 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
  Mg_chelatase  4 dvkGqeeakrale..iaaaGgHnlllvGppGsGKtmlakrlp 43
                  dv  qe++  +l+  ++ +   ++l++GppG+GKt  + +l+
    CDO70717.1 35 DVSAQEHTVAVLRktLTSTNLPHMLFYGPPGTGKTSTILALA 76
                  66677776666642244555679***********86554444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.4
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakve 145
                   +++LDE+  +++++  +LR+ +e    +i+r    ++
    CDO70717.1 134 IIILDEADSMTQDAQAALRRIMELY-ARITRFCLVCN 169
                   6899***************999853.45666555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.4e-05     0.058       3      23 ..      59      81 ..      57     155 .. 0.71
   2 ?   -1.4   0.0       3.8   2.4e+03      17      45 ..     197     229 ..     194     243 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.4e-05
      AAA_28  3 vitGgestGKTtlleaLaar..g 23
                 + G+++tGKT+++ aLa++  g
  CDO70717.1 59 LFYGPPGTGKTSTILALARQlfG 81
                689***************76442 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.8
      AAA_28  17 eaLa....argypvvpEaareileeklakgeda 45 
                 ++La    a+++pv pE++  +++  + + ++a
  CDO70717.1 197 ARLAqiasAENVPVTPETVDALISTSQGDLRRA 229
                 455533234499999**9999998888666655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-05     0.023       7     106 ..      61     149 ..      57     168 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
     DUF2075   7 tGvaGtGKtvvllnllaeleddeeertavyls..vNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrlltk 103
                  G +GtGKt   l+l+ +l   ++ r++v+ +    ++ + ++re++++ +      ++  + +++  + +       + + p+ +++i DEA  +++ 
  CDO70717.1  61 YGPPGTGKTSTILALARQLFGPDNFRSRVLELnaSDERGISIVREKIKNFA------RQTPRAQAVASDGK-------TYPCPPYKIIILDEADSMTQD 146
                 799****************44444444444440044555679999995555......44444444444444.......6679************99994 PP

     DUF2075 104 sdq 106
                 +++
  CDO70717.1 147 AQA 149
                 433 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.76   4.7e+02      16      37 ..      57      78 ..      39      97 .. 0.81
   2 ?   10.0   0.0   0.00085      0.53     119     153 ..     129     162 ..      87     169 .. 0.77
   3 ?   -2.2   0.0       4.7   2.9e+03      90     116 ..     198     223 ..     186     232 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.76
                EEEEEESTTSSHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 16 dvlvaaeTGsGKTlaflipvlq 37
                ++l  ++ G+GKT   l  + q
  CDO70717.1 57 HMLFYGPPGTGKTSTILALARQ 78
                57788999*****987766655 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00085
                 CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnqlpqit 153
                 +   ++++lDEad + ++  +  ++ri++  ++it
  CDO70717.1 129 CPPYKIIILDEADSMTQD-AQAALRRIMELYARIT 162
                 666799*********998.9999999999887766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.7
                 HHHHHHTTCSEEEEEHHHHHHHHHCTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  90 qlskldngvdivvgtpgrlddllstgk 116
                  l+++ ++++ v  tp+ +d l+st +
  CDO70717.1 198 RLAQI-ASAENVPVTPETVDALISTSQ 223
                 55566.667888899999999997655 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.067      29     104 ..      32     109 ..       7     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
      DUF815  29 dLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg...Lrlievekedlkelpklvellre 104
                 ++ ++ +q++++ +  ++ l+ ++  ++L++G  GtGK s++ al +++        r++e++ +d + ++ + e++++
  CDO70717.1  32 TIDDVSAQEHTV-AVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPDnfrSRVLELNASDERGISIVREKIKN 109
                 445555544443.44566677778889******************9998766556678888888877777777777766 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00014     0.085       6     102 ..      58     154 ..      54     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00014
                 EEEE--TTSSHHHHHHHHHHHTT-......-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.........EEEEETGGG-------------H CS
       AAA_2   6 illlgptgvGktelakalaellfv..kkekkliradaselleeeevehlvsrligappgyvgaeegG.........ivllDEidKihpkessgadvSre 93 
                 +l+ gp g+Gkt +  ala+ lf   + ++++  ++as+      v++ ++++  + p  ++++ +G         i+ lDE d  ++           
  CDO70717.1  58 MLFYGPPGTGKTSTILALARQLFGpdNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGktypcppykIIILDEADSMTQ----------- 145
                 799*******************9855444555556666655577799999999999****************************9998........... PP

                 HHHHHHHHH CS
       AAA_2  94 gVqrdLLqi 102
                 + q +L +i
  CDO70717.1 146 DAQAALRRI 154
                 555555555 PP

>> DUF881  Bacterial protein of unknown function (DUF881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.15        95      41     114 ..      84     156 ..      64     165 .. 0.83
   2 ?    8.1   0.1    0.0037       2.3       3      33 ..     267     297 ..     265     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.15
      DUF881  41 dLldvvneLraaGAeaIsingqRivatsaircagnailvdgrrisp.PyeikaIGdpekLesalniseavgglle 114
                 + ++ v eL+a++ + Isi  ++i +    +   +a+  dg+++   Py+i +  +++++ +  ++   +++++e
  CDO70717.1  84 NFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCpPYKIIILDEADSMTQDAQAA--LRRIME 156
                 55667889999999999999999999999999888******9998758****999999999987766..566555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0037
      DUF881   3 eelkllaGltpveGpGvtitlddakkaeeea 33 
                 e+ ++++G+ +v+G G ++ +dd+ + + ++
  CDO70717.1 267 EDFAVALGIERVHGDGMDVDVDDSGRVKAKG 297
                 677899*****************98876554 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.11      59     169 ..     133     233 ..     118     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
                     EEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHH CS
  DNA_pol3_delta  59 rivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealel 153
                     +i++l+ +      ++ +++ +++L ++++ +   t ++l+++      ++++  L+++ + +++k+l+ + +   ++++a+++++  ++e+++ 
      CDO70717.1 133 KIIILDEA------DSMTQDAQAALRRIMELYARITRFCLVCN----YVTRIIEPLASRCSKFRFKPLDPASTSARLAQIASAENVPVTPETVDA 217
                     78888888......55889999999999999999999999999....456799999999999********************************* PP

                     HHHHHTT-HHHHHHHH CS
  DNA_pol3_delta 154 Llelvennlsaikqel 169
                     L++ + ++l+++ + l
      CDO70717.1 218 LISTSQGDLRRAITYL 233
                     *********9887655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0038       2.3       9      50 ..      39      86 ..      34     108 .. 0.71
   2 ?    2.4   0.0      0.14        89     121     142 ..     133     153 ..     131     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0038
                HHHHHHHHH....H-S..EEEEE--TTSSTTHHHHHHHHHHHHTTS-S CS
        PhoH  9 Qkeylealk....knd..ivfaiGpaGtGKtylavalavealkkkkvk 50
                Q++++ +l+    + +   +   Gp GtGKt   +ala +++  ++++
  CDO70717.1 39 QEHTVAVLRktltSTNlpHMLFYGPPGTGKTSTILALARQLFGPDNFR 86
                55666555544332223356789********99999998887766665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.14
                 EEEEE-SGGG--HHHHHHHHTT CS
        PhoH 121 afvilDEAQnttkeqmkmfltR 142
                 +++ilDEA ++t+   +  l R
  CDO70717.1 133 KIIILDEADSMTQDA-QAALRR 153
                 58********99754.455555 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00021      0.13      76     135 ..      15      76 ..       4     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
   Parvo_NS1  76 adfdieenriykllslngynpvevgqvllawlskqlgkrnt..vwfyGpantGktnlaeaIa 135
                 +  di+ ++ ++  +++  + v + ++ +a+l+k+l+  n    +fyGp+ tGkt    a+a
  CDO70717.1  15 QAVDIQHQPWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLphMLFYGPPGTGKTSTILALA 76 
                 5789*********************************9995449**********97666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0003      0.19      22      65 ..      58     109 ..      46     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0003
      AAA_23  22 tlItGpNGaGKTTildAiklaLygetprlsrks..........grgfeksdvei 65 
                  l++Gp G+GKT+ + A+   L+g  p++ r++          g ++++++++ 
  CDO70717.1  58 MLFYGPPGTGKTSTILALARQLFG--PDNFRSRvlelnasderGISIVREKIKN 109
                 69**********************..4444444556666665544555555553 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00043      0.26       3      25 ..      60      87 ..      59     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00043
      AAA_18  3 ltGtpGvGKttlakeLskrlgf......g 25
                  G+pG+GKt+   +L++ l f      +
  CDO70717.1 60 FYGPPGTGKTSTILALARQL-FgpdnfrS 87
                57***************998.44344441 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00071      0.44       2      23 ..      59      80 ..      58     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00071
  RNA_helicase  2 wlyGpsgeGKStlakeLakall 23
                  ++yGp+g+GK++++  La++l 
    CDO70717.1 59 LFYGPPGTGKTSTILALARQLF 80
                  79***************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.71u 0.36s 00:00:01.06 Elapsed: 00:00:00.57
# Mc/sec: 1983.08
//
Query:       CDO70718.1  [L=612]
Description: hypothetical protein BN946_scf184798.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.3e-237  789.0   4.9   2.6e-237  788.8   4.9    1.0  1  HSP70        Hsp70 protein
    1.7e-17   63.3   0.2    1.4e-16   60.3   0.0    2.0  2  MreB_Mbl     MreB/Mbl protein
  ------ inclusion threshold ------
       0.01   15.3   1.2        4.5    6.7   0.0    2.9  3  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
      0.022   13.7   1.5       0.16   11.0   0.1    2.6  3  DDR          Diol dehydratase reactivase ATPase-like domain
      0.049   13.4   0.0       0.12   12.1   0.0    1.8  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
      0.052   12.8   0.0       0.12   11.6   0.0    1.6  1  StbA         StbA protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  788.8   4.9  8.6e-241  2.6e-237       1     594 [.       8     608 ..       8     612 .] 0.96

  Alignments for each domain:
  == domain 1  score: 788.8 bits;  conditional E-value: 8.6e-241
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 ++GiDLGtt+s+v+v++++++e+ian++gnrttPs+vaF+ +erl+G+aAk+qa++npkntvf++KrliGr+++dp+v+k++ ++p++v +k +g++ +
  CDO70718.1   8 AVGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFSAEERLIGDAAKNQAAMNPKNTVFDAKRLIGRRYDDPDVKKDMAHWPFEVIEK-DGSPLI 105
                 59*****************************************************************************************9.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEEEEXS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvyDlGg 195
                 +v++ ge  +f+p++is+mvL+k+ke+aea lgk+v++av+tvPaYfnd+qR atkdAg+iAGL+vlRi+NepTAaa+aYGld+++  e+nvl++DlGg
  CDO70718.1 106 KVNYLGEekTFSPQEISSMVLTKMKEIAEAKLGKTVKKAVVTVPAYFNDSQRLATKDAGSIAGLEVLRIINEPTAAAIAYGLDRQSsAEKNVLIFDLGG 204
                 *****9999***************************************************************************9989*********** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                 gtfdvS+l++  Gvf vkaTagDthlGGedfD++l+e++ +ef+kk+g d+s+d +al+rl++a+e+aK++LSs+  +++++e++++ + g+d+s +++
  CDO70718.1 205 GTFDVSLLNITGGVFAVKATAGDTHLGGEDFDNNLLEFFKKEFQKKTGHDISDDARALRRLRSACERAKRTLSSV--AQTTVEVDSLYQ-GEDFSANIT 300
                 **************************************************************************5..566678899999.********* PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSHCCEEEEBE CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevkdllllDvt 390
                 Ra+fee++++l++ tl+pve++lkdak+  e +d++vlvGGstRiPk+q+lv+e+fg ++++k++npDeava+GAAvqa++l+g+  e+++dllllDvt
  CDO70718.1 301 RARFEEINAPLFRSTLDPVERVLKDAKMPREKVDDIVLVGGSTRIPKIQSLVSEYFGgRQLNKSINPDEAVAYGAAVQAAILTGQtsEKTQDLLLLDVT 399
                 ********************************************************99**************************977899********* PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pLslg+ ++g+++  + +rnt ipt+ks+vf+t++dnqt+v+  v++ger++ +dn+llg+fel+gipp+prG+ ++  tf++danG+l+v+a+d+++g
  CDO70718.1 400 PLSLGVAMQGDIFGVVVPRNTPIPTNKSRVFTTVEDNQTTVTFPVYEGERTQCRDNRLLGEFELTGIPPMPRGQAELVTTFEVDANGLLKVTAQDRASG 498
                 *************************************************************************************************** PP

                 CEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHHHHHHHHHHHHHCHTTSSC..HHHHHHHH CS
       HSP70 490 keeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaekekvesaieeLkeeleeee..keeieakt 583
                 ++++i+i++s g ls+ eie+m+kdae+++++dk+  ++ eak+++e++++++e++++    + k+++++k++ve++++   e+le e+  ++e+++++
  CDO70718.1 499 RKAQISISNSVGrLSSVEIEQMIKDAEQYKQADKEFSARHEAKADLESYIHQVENTITSPeiGMKIKRHAKAQVEAELARALEKLEIEDstADELRKAQ 597
                 **********999********************************************988788999999998888877665555443333377777777 PP

                 HHHHHHHHHHH CS
       HSP70 584 eelkkvvekia 594
                   +k++++k +
  CDO70718.1 598 LGIKRALQKAT 608
                 77777766655 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.07   2.1e+02       3      23 ..       8      30 ..       6      69 .. 0.60
   2 !   60.3   0.0   4.6e-20   1.4e-16      77     317 ..     124     377 ..     117     385 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.07
                EEEEEE-SSEEEE..EETTTEEE CS
    MreB_Mbl  3 dlgiDLGtantlv..yvkgkgiv 23
                 +giDLGt+   v  +++++  +
  CDO70718.1  8 AVGIDLGTTYSCVgvWQNDRVEI 30
                589******98873345555433 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 4.6e-20
                 HHHHHHHHHHT.SS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSS..S-EEEEEE-SS-EEEEEEETTEEEEEEE CS
    MreB_Mbl  77 llkyfikkvkk.kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveep..sgnmvvdiGggttevavislggivtsks 172
                 ++ + +k++++ k   + ++ v++vP   ++ +r A k+a + aG +   +i+ep aAAi  gl+ + +  +  ++ d+Gggt +v+++ + g v +  
  CDO70718.1 124 MVLTKMKEIAEaKLGKTVKKAVVTVPAYFNDSQRLATKDAGSIAGLEVLRIINEPTAAAIAYGLDRQSSaeKNVLIFDLGGGTFDVSLLNITGGVFAVK 222
                 555556666662334467899***************************************99999765411567999************9877654332 PP

                 .....ES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHH..HH-BSS--HHHH.....EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 173 .....vrvaGdeldeaiikyirkkynlliGertaekiki..eigsavkeeeee.....kmeikGrdlvtglpkevevsseevrealkepvsaiveavke 259
                       +++G+++d++++++ +k+++   G+  +++ +   ++ sa+++++++     +++++   l +g   +++++ ++ +e  +  +++ ++ v++
  CDO70718.1 223 atagdTHLGGEDFDNNLLEFFKKEFQKKTGHDISDDARAlrRLRSACERAKRTlssvaQTTVEVDSLYQGEDFSANITRARFEEINAPLFRSTLDPVER 321
                 11222689**********************98877666322677777666655556678999999********************************** PP

                 HHH..TS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS.S-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 260 vLe..ktppeLaadivdrgivltGGgallkgldkllseetg.lpvkvaedpltcvakGtgk 317
                 vL+  k+p e + d     ivl+GG++ +  +++l+se +g  + + + +p ++va G++ 
  CDO70718.1 322 VLKdaKMPREKVDD-----IVLVGGSTRIPKIQSLVSEYFGgRQLNKSINPDEAVAYGAAV 377
                 **822456677766.....6899****************9725678888999999999865 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0015       4.5       1      50 [.       9      59 ..       9     148 .. 0.93
   2 ?    6.5   0.0    0.0017         5     216     267 .]     333     379 ..     305     379 .. 0.84
   3 ?   -3.3   0.1       1.7   5.2e+03     230     259 ..     545     574 ..     542     576 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
                 EEEEE-SS.EEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHH CS
  BcrAD_BadFG  1 vGiDgGsT.ttkavlmdekgevlgrgitnsanlesvrfeaaekvleealte 50
                 vGiD+G+T ++  v  +++ e++++ + n +  + v f a e+ + +a ++
   CDO70718.1  9 VGIDLGTTySCVGVWQNDRVEIIANDQGNRTTPSYVAFSAEERLIGDAAKN 59
                 8*******7789999999999***********************9999875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0017
                  -SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 216 vtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  v d+++l+GG  +      +++ lv+e +g+ + n ++ ++ + a GAa+ A
   CDO70718.1 333 V-DDIVLVGGSTRI----PKIQSLVSEYFGGRQLNKSINPDEAVAYGAAVQA 379
                  3.559******999....778899************************9865 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.7
                  HHHHHHH.....HHHH-S-EE--GGGGGHH CS
  BcrAD_BadFG 230 eaavkelrklvkenygevkininpdsiytg 259
                  e +  ++++ + +   ++ki+ + ++++++
   CDO70718.1 545 ESYIHQVENTITSPEIGMKIKRHAKAQVEA 574
                  566778899999999999999999999987 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.2e-05      0.16     130     166 ..     192     227 ..     115     230 .. 0.87
   2 ?    0.6   0.0     0.073   2.2e+02     274     297 ..     332     355 ..     315     363 .. 0.80
   3 ?   -2.4   0.1       0.6   1.8e+03     167     197 ..     544     574 ..     522     590 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
         DDR 130 GtekplailDlGaGstDaalieeegevkavhlAGAGe 166
                  +ek++ i DlG+G+ D +l++ +g v av  A AG+
  CDO70718.1 192 SAEKNVLIFDLGGGTFDVSLLNITGGVFAVK-ATAGD 227
                 568999*********************9975.77887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.073
         DDR 274 didfvvlvGgsalDfEipelvtda 297
                 ++d +vlvGgs+    i++lv++ 
  CDO70718.1 332 KVDDIVLVGGSTRIPKIQSLVSEY 355
                 68999*******999999999875 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.6
         DDR 167 mvtlliaseLgledrelaEdiKkyplakves 197
                 + + + + e  + + e+  +iK+++ a+ve+
  CDO70718.1 544 LESYIHQVENTITSPEIGMKIKRHAKAQVEA 574
                 5555556666666677777777777777775 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.1e-05      0.12     140     196 ..     324     381 ..     238     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.1e-05
      FGGY_C 140 ealekdsgkpldrlavdGGgskndllmqllAdilg.vpVerpkt.aeatalGaAilAav 196
                 +  +   + ++d ++++GG ++ + ++ l  + +g + + +  + +ea+a GaA+ Aa+
  CDO70718.1 324 KDAKM-PREKVDDIVLVGGSTRIPKIQSLVSEYFGgRQLNKSINpDEAVAYGAAVQAAI 381
                 33322.4677**************************888888777************96 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05      0.12     156     218 ..     188     253 ..     159     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
        StbA 156 lkeldeleslLiiDlGGttLDva..kvrgklegiskvkgdskiGvslitdavkealet.aktrtss 218
                 +++ +   ++Li DlGG t Dv+  +++g +  +  + gd ++G     +++ e +++  + +t +
  CDO70718.1 188 DRQSSAEKNVLIFDLGGGTFDVSllNITGGVFAVKATAGDTHLGGEDFDNNLLEFFKKeFQKKTGH 253
                 4455566789************95558999*************98888888777777633444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.52
# Mc/sec: 3536.08
//
Query:       CDO70719.1  [L=303]
Description: hypothetical protein BN946_scf184798.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-55  186.8   0.1    1.2e-32  112.9   0.0    2.1  2  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   6.7e-37   1.2e-32       1      99 [.     100     200 ..     100     207 .. 0.96
   2 !   72.0   0.1   2.2e-24   3.9e-20     143     215 .]     207     279 ..     203     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 6.7e-37
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakr..angyyvnerWlgGtLTN 95 
                   L+++g+hfGh+++r+np++ py yg+r gi iidl++tl+ lrra++vv++vaa+gg+++fvgt+ + ++av+ aa+r   +gy+v erWl+GtLTN
    CDO70719.1 100 LIASGAHFGHSQKRMNPNFVPYAYGVRAGITIIDLDHTLPLLRRAAQVVRGVAARGGSVVFVGTRADLRQAVRLAAERmgKQGYHVGERWLPGTLTN 196
                   899***************************************************************************66689************** PP

  Ribosomal_S2  96 fkti 99 
                     ++
    CDO70719.1 197 RVHM 200
                   8765 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 2.2e-24
  Ribosomal_S2 143 kkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaNddsirsiklilgvladaieeg 215
                   ++ + +Pdl + l+p  + +a++E++  ++p+i+ivD+nvdp++v ypIpaNd+s+r+ +li+g+l+ a+ eg
    CDO70719.1 207 RDEQVIPDLAIFLNPIPNIHAIRECALEHVPTIGIVDSNVDPRVVMYPIPANDESTRTAELIAGLLSVAGREG 279
                   567899**************************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 1651.09
//
Query:       CDO70720.1  [L=510]
Description: hypothetical protein BN946_scf184798.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-88  294.7   0.0    1.2e-87  293.8   0.0    1.5  2  Chorismate_bind  chorismate binding enzyme
    1.1e-27   97.0   0.0    3.7e-27   95.3   0.0    2.0  2  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.83   7.5e+03       8      37 ..     166     195 ..     164     207 .. 0.70
   2 !  293.8   0.0   1.3e-91   1.2e-87       2     258 .]     227     483 ..     226     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.83
                      HHHHHHHHHHTTS-SEEEEEEEEEECESS- CS
  Chorismate_bind   8 avekvkeeiragdlykvvlsrrlkaeleaa 37 
                      +v+ v + +  gd  +v+ls  +++ +++a
       CDO70720.1 166 SVKVVSHVFCPGDAGQVNLSFIYQTAVSKA 195
                      566666667788999999998888776655 PP

  == domain 2  score: 293.8 bits;  conditional E-value: 1.3e-91
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      +e Y++ v+++k++i agd+ ++v+s+rl  +  + ++p+++yr+lr+ np+py+f+l++++ +++gaSPE+l+kve++ ++  ++iaGT++rg
       CDO70720.1 227 KEGYERFVTELKKHIVAGDIIQAVPSQRLARP--TTLHPFNAYRHLRRINPSPYMFYLDCGHLQIVGASPETLCKVEKN-KVYNHAIAGTIRRG 317
                      789*****************************..89*****************************************77.************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--H..HHHHHHCSS-CCCSEESH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvsl..ldllkalfPtgavtGaPk 187
                      kt eede+l +ell++eK+raEh m+vdl+rnd+++v+kp++v+v++l ++e++s+v+hl+s+++g l+e++++  +d+++++fP+g+v+GaPk
       CDO70720.1 318 KTIEEDEKLGAELLSSEKDRAEHIMLVDLARNDVNRVCKPETVHVDHLLRLEKFSHVIHLTSQVSGMLREGKNSarFDAFRSIFPAGTVSGAPK 411
                      *********************************************************************99776679***************** PP

                      HHHHHHHHHHSSS--TTTTSEEEEEET.TS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 188 krameiidelEearRgvYaGavgylda.dgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                       +a+e+i elE++rRg+YaGavg +d+ ++e++++++IRt+ +kd+ ++l+aG+GIv dS  e+Ey Et +K
       CDO70720.1 412 IKAIELIYELEKQRRGIYAGAVGRFDFaEDEMDTCIAIRTMAFKDGIAYLQAGGGIVFDSVEEDEYIETINK 483
                      ***************************7888**************************************988 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   4.1e-31   3.7e-27       1     140 [.      38     167 ..      38     169 .. 0.89
   2 ?   -2.6   0.0      0.62   5.6e+03      32      51 ..     286     305 ..     260     355 .. 0.66

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 4.1e-31
  Anth_synt_I_N   1 ddltplsvylklaeee.hkflLeSaeneggegrySfigldpflelkskngevevegpegeeleeeepldalrellerfrsaedseptelpfvgGlv 95 
                    d ltp  +yl++a+++ ++flLeS+   ++ +rySfig+dpf  +++  +e          + +++p+ al++ l  ++ + ++ p+ + f+gG++
     CDO70720.1  38 DLLTPCVAYLRIAKDSkYSFLLESVVAGENLARYSFIGADPFKIIRVGPNE----------EVTGDPMVALQKELGVYK-Y-VKLPEVPTFTGGAI 121
                    679***********99*********988888**********7666644333..........33447*************.6.67899999****** PP

  Anth_synt_I_N  96 GylgYDlvreie.klpksakddlnlpdarlilydtlivfDhkerrl 140
                    Gy+gYD ++++e k  +  +d l +p+a ++l+dtl+++Dh+++ +
     CDO70720.1 122 GYVGYDSIQHFEpKTARPLEDPLRIPEAIFMLVDTLLIYDHLYQSV 167
                    **************9999************************9987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.62
  Anth_synt_I_N  32 rySfigldpflelkskngev 51 
                    +  ++g++p   +k+++++v
     CDO70720.1 286 HLQIVGASPETLCKVEKNKV 305
                    35677777766666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.51
# Mc/sec: 3020.24
//
Query:       CDO70721.1  [L=473]
Description: hypothetical protein BN946_scf184798.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-58  197.8   0.0    1.7e-58  197.1   0.0    1.4  1  SHQ1      SHQ1 protein
    1.2e-05   26.2   0.0    2.1e-05   25.4   0.0    1.4  1  CS        CS domain
    5.4e-05   23.5   0.0    0.00015   22.1   0.0    1.7  1  PIH1_CS   PIH1 CS-like domain
  ------ inclusion threshold ------
      0.025   15.1   0.7      0.064   13.7   0.6    1.7  1  WSD       Williams-Beuren syndrome DDT (WSD), D-TOX E motif


Domain annotation for each model (and alignments):
>> SHQ1  SHQ1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   3.8e-62   1.7e-58       2     174 ..     245     433 ..     244     435 .. 0.96

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 3.8e-62
        SHQ1   2 kepvefteeekeklkkLpkkeyllskeekkellltlvdiLfayaYdqretegeknvESawtigkLspqlsflde...............fsslkevvia 85 
                 +e++++te+e+  + +Lp+keyl + e++++l+ltl+++LfayaY+ r+t+ + + ESawti+ L+p++s ld                + +l ++ ia
  CDO70721.1 245 TEELQYTEKENLAMLRLPRKEYLATPEQTHNLYLTLLTLLFAYAYEIRTTQYDPTPESAWTISSLTPAFSALDPppyvffpepepsdfsEAELAATFIA 343
                 57899*********************************************************************************987699******* PP

        SHQ1  86 svrRsltYPlyRnfeLaekvlkdvykiLrggkrlvlkcLldikelfrehdvyyvlnklyldDycvwiqsak.eevlrslaeelkkvkvkk 174
                 s+rRsl++PlyR+f+Lae++  dv+ +L +gkr+v +cLl++k ++++hdvyyv++k+++dD+cvw++    ++vl++lae++k++ +kk
  CDO70721.1 344 SYRRSLAFPLYRSFALAEACRADVAALLARGKRVVTRCLLEMKDILDHHDVYYVYSKIWVDDFCVWTLAYAdDNVLTRLAERVKTLPMKK 433
                 ********************************************************************5555************998887 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.7e-09   2.1e-05       2      76 .]       5      78 ..       4      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.7e-09
                SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECEBSS-BETTTEEEEEE.T..TEEEEEEEB CS
          CS  2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliegeLfgpIdpeesswtie.s..kkveitLkK 76
                +++ +Qt+++V+vtiy + v  +++dv+++  e+ ++v+i ++++l  + + +p + +++s  +  +    + +tL+K
  CDO70721.1  5 RFSCSQTENSVIVTIYCPSV--RASDVEINVDETLFSVHI-NPYFLRLN-FPHPLVEDDASSAVYdPstGYLTVTLTK 78
                66668**************9..******************.77888888.****999999888873344456666665 PP

>> PIH1_CS  PIH1 CS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.3e-08   0.00015      31      96 ..      13      76 ..       4      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.3e-08
     PIH1_CS 31 kelaieielPllksikevklrvgerrleleskkakyfLslkLpYp.vdedkveAkFvkktklLkvkl 96
                ++ +++i+ P +  + +v+++v+e+ +++    + yfL+l++p p v++d+ +A ++ +t  L+v+l
  CDO70721.1 13 NSVIVTIYCPSV-RASDVEINVDETLFSVHI--NPYFLRLNFPHPlVEDDASSAVYDPSTGYLTVTL 76
                56899*******.567788888888888753..47*********96789999*************98 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   1.4e-05     0.064      13      86 ..     167     243 ..     164     255 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
         WSD  13 rrYwlfdkgtgrlf..veepsegdievllekreekesekrr...eeeeeeevleegewavysskeqleeLiesLnprgv 86 
                 rrY ++d  +++ f  ve++++ ++++l + +e+++ ++rr    ++ee++  ee  +a y++   ++eLi++Lnp  +
  CDO70721.1 167 RRYGFLD-MHSGYFnhVEHSEN-EVNELGADAETCPPQERRerrLKHEEQKWDEEHYMADYADDGYIQELIAWLNPHTT 243
                 5666663.33333222776665.6666666666554444332226777778888888899***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.55
# Mc/sec: 2584.06
//
Query:       CDO70722.1  [L=924]
Description: hypothetical protein BN946_scf184798.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 5018.62
//
Query:       CDO70723.1  [L=495]
Description: hypothetical protein BN946_scf184798.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.03   13.5   0.4      0.059   12.6   0.4    1.4  1  UAA       UAA transporter family
       0.22   11.7  22.0       0.23   11.6   8.3    2.9  3  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   6.6e-06     0.059     121     213 ..     203     311 ..     201     376 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-06
         UAA 121 lsvllltlGviiftllsakdk.................kedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshllslplflll 202
                 +s++ + +Gv+++ l+ +  k                 ++ ++ + +k l+G++ +++a++++a   +++ek++++y      a+ y  l++ + ++l 
  CDO70723.1 203 ISLITVMAGVSLVGLSGSLVKdavkesalnlldelppaEHVEEPEVTKVLVGVFFILFAQIFTAAQFVTEEKIMNRYSVAPLVAVGYEGLFGALSIIL- 300
                 567777788888877544333667788888888888877777889999******************************99999999998888776654. PP

         UAA 203 qgellsavkfl 213
                 +  +l +++ l
  CDO70723.1 301 AMPILAHFAYL 311
                 33444444433 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   8.3e-05      0.75      77     122 ..     138     183 ..     112     184 .. 0.87
   2 ?   -4.0   0.5       1.7   1.6e+04     122     135 ..     202     215 ..     200     217 .. 0.77
   3 ?   11.6   8.3   2.6e-05      0.23       2      99 ..     253     365 ..     252     386 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.3e-05
        EamA  77 lafllffyalkktsasnaslitslePvftlilsvlllgekltlkql 122
                  +  l++ +l +t++s+  +     ++f+ ilsv++l+ +l l+ql
  CDO70723.1 138 TGTTLMNVGLLYTPVSIYQMTRGALVLFVGILSVIFLRRRLWLYQL 183
                 56789***********************************998886 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.7
        EamA 122 llgivlillGvlli 135
                 +++++ +++Gv l+
  CDO70723.1 202 WISLITVMAGVSLV 215
                 78888888888876 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 2.6e-05
        EamA   2 lgillallaalfwaiyfvlskillrkv..spltltfvrfliagilllii...............allkegklaklslkdwllllllgllgtvlafllff 83 
                  g++++l a +f a+ fv+  ++++++   pl ++++  l++++  ++                ++  ++  + ++  ++l+  ++ +++++l++++ +
  CDO70723.1 253 VGVFFILFAQIFTAAQFVTEEKIMNRYsvAPLVAVGYEGLFGALSIILAmpilahfaylspffdLPRGWH--QMIDTPAVLWSGVVIAFSIALFNFFGL 349
                 699*****************99999993345555556667666555333344666666655544444444..4599999******************** PP

        EamA  84 yalkktsasnaslits 99 
                 +  +++sa+  sl  +
  CDO70723.1 350 SVTRHVSATARSLTDT 365
                 ********98887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.54
# Mc/sec: 2782.22
//
Query:       CDO70724.1  [L=994]
Description: hypothetical protein BN946_scf184798.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-53  179.3   1.5    4.9e-53  179.3   1.5    3.4  3  E1-E2_ATPase     E1-E2 ATPase
    6.7e-46  156.3   9.2    6.7e-46  156.3   9.2    2.0  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    9.8e-22   78.3   0.6    2.2e-20   73.9   0.6    2.8  1  Hydrolase        haloacid dehalogenase-like hydrolase
    1.4e-21   75.9   0.3    2.6e-20   71.9   0.0    2.5  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    9.1e-18   64.1   0.0    1.9e-17   63.1   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
    1.7e-07   31.2   1.1    2.1e-06   27.7   1.0    2.3  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    2.3e-05   24.7   0.0    2.3e-05   24.7   0.0    3.7  4  DUF1772          Domain of unknown function (DUF1772)
     0.0015   19.0   0.0     0.0039   17.6   0.0    1.8  1  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.044        98     113     159 ..      52     101 ..      38     113 .. 0.77
   2 !  179.3   1.5   2.2e-56   4.9e-53       2     181 .]     124     328 ..     123     328 .. 0.97
   3 ?   -1.8   2.3      0.84   1.9e+03     117     163 ..     937     991 ..     921     993 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.044
                   HHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHHHHHS CS
  E1-E2_ATPase 113 kkldklgkvlvpvvlliallvflialllgksla...eallralallvaai 159
                    +l+++  +lv++ l+ a++ f++al+   +      a+++ l++l++ i
    CDO70724.1  52 LILEQFKDQLVLILLASAVVSFILALFDDSDGSswwSAFVEPLVILLILI 101
                   567889999****************9976666644577777666666655 PP

  == domain 2  score: 179.3 bits;  conditional E-value: 2.2e-56
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S...EEE-TTTS---S-EE-.............G-TTEE-TT-EEEE-EEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa...evdesaLTGEslpvek.............ekgdmvfsGtvvvsgeak 82 
                   ++p++akv+rdg++++i a elvpGDi+ +  gd++paD+r+++  +   +vd+++LTGEs+ v+k             + ++ +fsGt+vv+g+ +
    CDO70724.1 124 YSPDEAKVLRDGQWTRIHATELVPGDIISIAVGDKIPADCRLLSVAStslRVDQAILTGESTSVSKttdvvadpravkqDMTNILFSGTTVVNGKGT 220
                   6899****************************************777779***************************999***************** PP

                   EEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHHHH CS
  E1-E2_ATPase  83 avVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavpla 170
                   avV+ tg++t +g i ++++++ s+ktpl+kkld +g +l++v+++i++lv+li++ ++ ++a         +++  a+al+vaaiP++L+++++ +
    CDO70724.1 221 AVVVFTGQKTAIGDIHKSISSQISEKTPLKKKLDDFGDMLAKVITVICILVWLINIRHFWDPAhrgalkgavYYFKIAVALAVAAIPEGLAAVITAC 317
                   *********************************************************999999*******9999999******************** PP

                   HHHHHHHHHHT CS
  E1-E2_ATPase 171 lalgarrlakk 181
                   lalg++++a+k
    CDO70724.1 318 LALGTKKMAQK 328
                   *********86 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.84
                   HHHHHHHHHHHHHHHHHHHS-STTTSSTT........HHHHHHHHHHHHHS-TTH CS
  E1-E2_ATPase 117 klgkvlvpvvlliallvflialllgksla........eallralallvaaiPcaL 163
                    ++  ++p+ +++++++ l ++ ++  l         + +l+++++ ++a P  L
    CDO70724.1 937 HVAILYIPFFTALFAITPLNWVEWKAVLYlsapvvliDEILKFISVTIVAPPSKL 991
                   4455566666666666666665544444488888999999999999999999877 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.69   1.6e+03      86     117 ..     243     284 ..     194     314 .. 0.56
   2 !  156.3   9.2     3e-49   6.7e-46       1     182 []     777     980 ..     777     980 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.69
  Cation_ATPase_C  86 s..........snyaqtmaFitlvlsqifnalnlrsrreslf 117
                      +           +++  +a ++ v++ ++ ++n+r+  +++ 
       CDO70724.1 243 IsektplkkklDDFGDMLAKVITVICILVWLINIRHFWDPAH 284
                      133445555667777777778888888888888887443333 PP

  == domain 2  score: 156.3 bits;  conditional E-value: 3e-49
  Cation_ATPase_C   1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenkls........ 86 
                      p +l ++q+Lw+nLvtD+lpa+aL+++pp+ +im+ pPr+ +ep+++k +++r +++g++++++t++ +++++ ++   ++ + ++        
       CDO70724.1 777 PEALIPVQLLWVNLVTDSLPATALGFNPPDHSIMRVPPRDSREPIVTKWLFFRYMVIGIYVGVATVAGYAWWFMFYTGGPQISFYQlthfhqcs 870
                      67899****************************************************************9999988777777677788888999 PP

  Cation_ATPase_C  87 ...............snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlia 165
                                      ++a tm + +lv +++fna+n+ s++esl++   +++n++l++ai+ls++l+v+i+y+p+++a+f ++pl++ ew  +
       CDO70724.1 871 alfpeigcemftnvmAKRATTMSLSILVTVEMFNAMNSLSENESLLR-LPIWKNPFLVGAIALSMALHVAILYIPFFTALFAITPLNWVEWKAV 963
                      9*************99*******************************.********************************************** PP

  Cation_ATPase_C 166 lllalvvllvdelvKll 182
                      l l++ v+l+de++K++
       CDO70724.1 964 LYLSAPVVLIDEILKFI 980
                      ***************86 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.6   9.8e-24   2.2e-20       2     210 .]     345     708 ..     344     708 .. 0.68

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 9.8e-24
                 SEEEEESBTTTBCHHHHHHHHHHHH.................................CHHHHHHHHHH....HHCHHHHHHHHHHHHHHHHHHHHHHE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa.................................alalaaaletg....sehpigkalvaaakarsgaltgfatf 63 
                 ++++ Dk+GTLtt ++sv +++v                                   a +l++  e++      + i  a  +a+ ++++++      
  CDO70724.1 345 NVICSDKTGTLTTNQMSVSKFLVVDisgtpreflvegttfapegsvrpadgkaitevpAEPLKRLAEISavcnDSKIIYHADKKAYSNLGEPT------ 437
                 89******************7777755555444444444445555544444444444544444444444444433333333333333332222...... PP

                 TTTE...................................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH........................ CS
                 xxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
   Hydrolase  64 igrg...................................ayaigkpewltaldippdlgaaigsaqsqgrtvall........................ 103
                                                         y +  p++lt  +++ d ++    aq++g    l                         
  CDO70724.1 438 ---EaalkvlaeklpcpdpelaknlpyldpatranavneFYERTIPRLLTF-EFSRDRKMMSVLAQKDGTGILLAkgapesilarcnsvlvngrtipli 532
                 ...022222222234555555555555555533333333333333333333.3555555555555555555555599999999999999999******* PP

                 ..................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH CS
                 ..................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ..................................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraa 152
                                                                   +   + ++ + dp  ++pe++ ava+ +aagi+v+ +tgdn+ tae + 
  CDO70724.1 533 pqlrdallqstitygsqglrtlalayaenqsldpeyyksettagyarfekDLTFVSLVGMLDP--PRPEVRNAVAQCQAAGIRVICITGDNKGTAETIC 629
                 ***********************************************9887788888888899..********************************** PP

                 HHTT..........GGGESEEEEHHCES......................STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxx..........xxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 153 nqlG..........ddyfdaviasdiet......................vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +q+G          +                                   ++  +p++k  +++ Lq ++  vam GDgvnDa+al++A+
  CDO70724.1 630 RQIGifgenedltgKS-----------YtgreldelspeeklkavmranlFSRTEPSHKSMLVDLLQSQGLVVAMTGDGVNDAPALKKAD 708
                 ****776653333322...........222232234444455454444444444999999999999999*******************98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.1e-23   2.6e-20       2      69 .]       5      72 ..       4      72 .. 0.98
   2 ?    1.4   0.1      0.12   2.7e+02      50      66 ..      86     102 ..      81     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.1e-23
  Cation_ATPase_N  2 halsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69
                     +++++eevl+ +++d+++GL++++aa++ + yG+Nel+e ++++lw+++l+qf++ lv++Ll++a+vs
       CDO70724.1  5 WTKTAEEVLQYYNVDETRGLSSEAAAKHAELYGKNELPEDPPTPLWELILEQFKDQLVLILLASAVVS 72
                     789****************************************************************8 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
  Cation_ATPase_N  50 llkqftnplvilLlvaa 66 
                       +++f  plvilL+  a
       CDO70724.1  86 WWSAFVEPLVILLILIA 102
                      6899*********9765 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   8.5e-21   1.9e-17       1      91 []     414     522 ..     414     522 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 8.5e-21
  Cation_ATPase   1 ilcNsaafsensekdevkllGnktEsALlvlaekl....................gldteelreetkkvqeipFnssrKrmsvvlklepekkvrly 76 
                    ++cN++++ + ++k++++ lG++tE+AL vlaekl                    +  +e +++  +++ +++F+++rK+msv+ +  ++++ +l+
     CDO70724.1 414 AVCNDSKIIYHADKKAYSNLGEPTEAALKVLAEKLpcpdpelaknlpyldpatraNAVNEFYERTIPRLLTFEFSRDRKMMSVLAQ--KDGTGILL 507
                    58*********************************888888888888888888766666677777*********************..56****** PP

  Cation_ATPase  77 vKGApeiilkrCthv 91 
                     KGApe+il+rC++v
     CDO70724.1 508 AKGAPESILARCNSV 522
                    ************975 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.15   3.3e+02      18      54 ..     598     634 ..     594     640 .. 0.89
   2 !   27.7   1.0   9.5e-10   2.1e-06     206     250 ..     691     735 ..     678     740 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgl 54 
                  ++ ++a+++++++gi v+  TG +  +++ + +++g+
   CDO70724.1 598 PEVRNAVAQCQAAGIRVICITGDNKGTAETICRQIGI 634
                  67899*****************999999999888875 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 9.5e-10
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTH CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedG 250
                  v+  GDg ND + L++a++gvAmg++++ +k aAd+v ++ n   
   CDO70724.1 691 VAMTGDGVNDAPALKKADIGVAMGSGTDVAKLAADMVLTDSNFAT 735
                  6678********************************999888655 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     1e-08   2.3e-05      17     121 ..      41     142 ..      25     146 .. 0.80
   2 ?    0.2   0.2      0.38   8.5e+02      37      85 ..     262     313 ..     250     341 .. 0.65
   3 ?   -1.2   0.1         1   2.3e+03      15      53 ..     816     849 ..     806     871 .. 0.60
   4 ?    1.5   1.5      0.16   3.5e+02      11      55 ..     906     955 ..     889     985 .. 0.53

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1e-08
     DUF1772  17 lpassslllkqwrrlfkrgkavfpplallsalafa.ylaaraasrgarllylaaaal.lllsivpyTllvmvPtNnkLaalkeedakekedeaevrell 113
                 lp+++  + ++w+ +++  k ++ +++l+sa++ + ++ +++++ ++++  ++  ++ ll+ i+  T+ v++ tN++    k+ da ++ + +e++ l+
  CDO70724.1  41 LPEDP--PTPLWELILEQFKDQLVLILLASAVVSFiLALFDDSDGSSWWSAFVEPLViLLILIANATVGVIQETNAE----KAIDALKEYSPDEAKVLR 133
                 45455..8899*****9999999987777777777466699999999999999999989999999**********55....333444455778999899 PP

     DUF1772 114 e.rWgrlnl 121
                 + +W+r ++
  CDO70724.1 134 DgQWTRIHA 142
                 99*****98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
     DUF1772  37 avfpplallsalafa.yla...araasrgarllylaaaallllsivpyTllvm 85 
                 +v+ ++++l+ l  +  ++   +r a +ga  ++  +a++l+++ +p  l+++
  CDO70724.1 262 KVITVICILVWLINIrHFWdpaHRGALKGAVYYF-KIAVALAVAAIPEGLAAV 313
                 4555555555555555555887666666666666.557778888888655555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1
     DUF1772  15 lslpasssl..llkqwrrlfkrgkavfpplallsalafa.yl 53 
                 +      s+  +++ w  lf r+ ++   +++++++++a ++
  CDO70724.1 816 D------SRepIVTKW--LFFRYMVIGIYVGVATVAGYAwWF 849
                 3......333477788..554554444447788888887333 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.16
     DUF1772  11 vPallslpasssl.....llkqwrrlfkrgkavfpplallsalafa.yla.......a 55 
                 + +l+       +     +l+ w++ f +g+ ++ +++ +++l ++ +++        
  CDO70724.1 906 MNSLS-------EnesllRLPIWKNPFLVGAIALSMALHVAIL-YIpFFTalfaitpL 955
                 22222.......2234469999*99998887666663333333.33222233344332 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06    0.0039      87     188 .]     597     705 ..     543     705 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
         HAD  87 dpgalellaahraaGdrvvvvSgglrplvepllaelg....adevlatelevddrltgelglegkpvrgegkvaalre...........wlaaegegid 170
                 +p+++ ++a+++aaG+rv+ ++g ++  +e ++++ g     +++ +        +tg+   e +    e+k++a+ +           +         
  CDO70724.1 597 RPEVRNAVAQCQAAGIRVICITGDNKGTAETICRQIGifgeNEDLTGK------SYTGR---ELDELSPEEKLKAVMRanlfsrtepshK--------- 677
                 37***********************************33333444444......88888...7777788899988877555433333330......... PP

         HAD 171 lee...........vvay.GDspsDlpllr 188
                   +           vva  GD+++D p+l+
  CDO70724.1 678 --SmlvdllqsqglVVAMtGDGVNDAPALK 705
                 ..23444666666577779********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.56
# Mc/sec: 5375.78
//
Query:       CDO70725.1  [L=249]
Description: hypothetical protein BN946_scf184798.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.39s 00:00:01.08 Elapsed: 00:00:00.58
# Mc/sec: 1299.35
//
Query:       CDO70726.1  [L=164]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-09   36.4   0.5    1.6e-08   34.7   0.2    2.1  2  DPBB_1    Lytic transglycolase


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.11   1.9e+03      48      74 ..      44      68 ..      30      76 .. 0.71
   2 !   34.7   0.2   8.7e-13   1.6e-08       7      80 ..      77     158 ..      71     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.11
                EEEE----STTECEEE-HHHHHHHT-T CS
      DPBB_1 48 titDrgpfppgrhiDLSkaAfeklakp 74
                ++t   p  ++  + LS+  +++ a+ 
  CDO70726.1 44 RATANAP--QNFTLSLSASSAHAVAQK 68
                4444444..567788888888887765 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 8.7e-13
                 EE-CCC.-TTSSB--TTS-EEE-SSS..-TT-EEEE....TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EE CS
      DPBB_1   7 slykdg.tacGecyevkcltaahktl..plgtycrv....ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvip 80 
                 ++y+ g  acG+  + ++++ a +++    g  c++    ++ gk+v+ t+tD++p ++++  DLS++ f++la  + Gvi 
  CDO70726.1  77 TYYDAGqNACGSTDDGNAYVMALSSSiyNNGEHCYKqvtlQYnGKQVKATVTDKCPGCKDAEADLSRPLFQALAPLDDGVIY 158
                 6886666677766666665555555445556666666665668************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.37s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 897.21
//
Query:       CDO70727.1  [L=264]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0041   17.4   0.0      0.016   15.5   0.0    2.0  2  DPBB_1      Lytic transglycolase
  ------ inclusion threshold ------
       0.16   11.1  16.2       0.22   10.7  16.2    1.1  1  SOG2        RAM signalling pathway protein
        3.1    7.9  15.2        5.9    7.0  14.7    1.6  2  Podoplanin  Podoplanin
        3.6    6.1   9.8        4.2    5.9   9.8    1.1  1  Hamartin    Hamartin protein
        5.3    5.8   6.7        7.1    5.4   6.7    1.1  1  Apt1        Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.5e-06     0.016      34      74 ..      99     139 ..      64     149 .. 0.83
   2 ?   -1.3   0.0      0.77   2.8e+03      32      53 ..     215     237 ..     190     249 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.5e-06
                 T-EEEETT.--EEEEEEEE----STTECEEE-HHHHHHHT-T CS
      DPBB_1  34 gtycrvls.gksvtVtitDrgpfppgrhiDLSkaAfeklakp 74 
                 + +++v + gks+  +itD +  +p   iDLS+  f+ la +
  CDO70727.1  99 E-KITVDYqGKSTGAMITDECEECPFGAIDLSPSLFSYLAGS 139
                 3.37776679**************************999866 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.77
                 -TT-EEEETT.--EEEEEEEE-- CS
      DPBB_1  32 plgtycrvls.gksvtVtitDrg 53 
                 + +++ + +s + ++tVt  D g
  CDO70727.1 215 ATPSSTSTSSaEPTTTVTSFDTG 237
                 23443444444678888877766 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  16.2     6e-05      0.22     281     361 ..     161     234 ..     124     253 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6e-05
        SOG2 281 stPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastprslattpappasaesfastltasrintlaav 361
                 ++P ++++ts+   ++ +++ t++ t+t++s   ++ s++++t++ ++tp+s +t++a+p+s+++     +a +++t++++
  CDO70727.1 161 TMPQKSTTTST--RQQPTTTPTPTPTPTPSSTTHKTTSHKTSTST-STTPSSTSTSSATPSSTSTS----SAEPTTTVTSF 234
                 22222222222..22222222333333333333333333332222.22233333233322222221....12222222222 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.93   3.3e+03       4      29 ..      10      35 ..       8      48 .. 0.80
   2 ?    7.0  14.7    0.0016       5.9      49     134 ..     165     252 ..     151     257 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.93
                XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  4 vpvlllvlGsaslwvlaegastvrpe 29
                  vl++vl s+ + + ++g ++ r +
  CDO70727.1 10 LTVLFVVLASSLVLAHSNGHNVKRLQ 35
                57999999999999999998887765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXXXXXXXXXXX-----G..GG-XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  49 nvvttgaseepyesglttlvptstesvtdlrl..edlptaestvkakeesqstttlnvvtshst..ekvgeetettvekdGLatvtLvgi 134
                 + +tt+++++p+++   t  pt t s t +++   +++t+ st+   + + s+t +++ ts++    +v+     t +  GLa   Lvg+
  CDO70727.1 165 KSTTTSTRQQPTTTPTPT--PTPTPSSTTHKTtsHKTSTSTSTTPSSTSTSSATPSSTSTSSAEptTTVTSFDTGTLDSFGLAMLQLVGL 252
                 445566666655544444..4433333333330034455556666666666666666666654444666666677888899999999996 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.8    0.0012       4.2     366     431 ..     165     229 ..     114     255 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
    Hamartin 366 sstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeks..esskpdlskqeeve 431
                  st+ +  +++p+tTP  ++  +p+s+++++++ ++++s+  s+ p++ ++s  + s++++s+ e+++
  CDO70727.1 165 KSTTTS-TRQQPTTTPTPTPTPTPSSTTHKTTSHKTSTST--STTPSSTSTSsaTPSSTSTSSAEPTT 229
                 233332.567777777777764444444443333333333..33333333331223333333333332 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.7     0.002       7.1     331     385 ..     174     225 ..     139     247 .. 0.40

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.002
        Apt1 331 s...........ssssssassssssssrssslelrlkptsstssssssessssssskkrsseessl 385
                 +           +           ss+  ++ +++    +sts+s++++s+s+ss+  +s+++ss+
  CDO70727.1 174 QptttptptptpT----------PSSTTHKTTSHK----TSTSTSTTPSSTSTSSATPSSTSTSSA 225
                 1111111111111..........111111111111....111111111111112221222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1527  (0.0851693); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                       186  (0.0103743); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.54
# Mc/sec: 1468.22
//
Query:       CDO70728.1  [L=296]
Description: Distantly related to plant expansins [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.036   14.4   0.0    1.5  1  DPBB_1    Lytic transglycolase
        1.5    7.7   2.4        1.8    7.4   2.4    1.1  1  Miga      Mitoguardin
        4.1    6.1   7.4        5.8    5.6   7.4    1.2  1  Apt1      Golgi-body localisation protein domain
        5.6    6.8  16.5          8    6.3  16.5    1.1  1  SPX       SPX domain
        8.8    5.4  19.5         12    4.9  19.5    1.1  1  SOG2      RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.9e-06     0.036      40      79 ..     106     147 ..      59     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.9e-06
                 TT.--EEEEEEEE----STT.ECEEE-HHHHHHHT-TTTS-E CS
      DPBB_1  40 ls.gksvtVtitDrgpfppg.rhiDLSkaAfeklakpraGvi 79 
                  + gks + ti D++p +p+   +DLS   f+ la  + Gv+
  CDO70728.1 106 TYnGKSAKATIMDKCPGCPSpGGLDLSTGLFSYLAPLSEGVL 147
                 4459*************655168**************99986 PP

>> Miga  Mitoguardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.4   0.00052       1.8      63     151 ..     185     287 ..     147     292 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00052
        Miga  63 vkkrasekksrssssksndtlslasskassssa................klsgslqslasvksvnsssssaaansaswdkeeeeelklenitvltpenl 145
                 +k+++++ ++ s++ ++ +t s++s+ ++++s+                 +s+s+++ +s +s + +sssaaa  as   +  ++l   n +vl   ++
  CDO70728.1 185 SKQHHTTTSTWSPEPEPTTTWSSSSEAEPTTSSwtpsstwssssawsspPPSSSSHASSSSSSSSATSSSAAA--ASSAPAGPDTLGKLNQAVLGLTEI 281
                 3444444444555555555555555544444443333333333333333333333333333322222222222..122222224444444455555666 PP

        Miga 146 ylmGme 151
                  l G+e
  CDO70728.1 282 MLAGVE 287
                 666655 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.4    0.0016       5.8     321     388 ..     188     254 ..     141     282 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0016
        Apt1 321 deesessssss...ssssssassssssssrssslelrlkpt.......sstssssssessssssskkrsseessless 388
                 ++ ++s+        + +++ ssss+ +  +ss       t       s  s  ss+  ssss+++++ss++s+++ss
  CDO70728.1 188 HHTTTST---WspePEPTTTWSSSSEAEPTTSSW------TpsstwssS--SAWSSPPPSSSSHASSSSSSSSATSSS 254
                 1111111...122212222222222222222222......022222111..111112222222222222211111111 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  16.5    0.0022         8      57     152 ..     162     263 ..     149     280 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
         SPX  57 kkksse.rtepstsaaadesgnsaadasssepkdeae...........slprrsplsrssrssssygglvssppsansssssddssesnpadsssssss 143
                 ++  s+ + +p+ts++++++++s+++++ +++  ++e           + ++++++ + s++ ss ++++s+pps++s++ss++ss+s       +sss
  CDO70728.1 162 PAPTSTsQWQPPTSTWTPPATTSSKQHHTTTSTWSPEpeptttwssssEAEPTTSSWTPSSTWSSSSAWSSPPPSSSSHASSSSSSSSA------TSSS 254
                 33333355566777777777777777777777666655566777766544444444466666666666666666666666666666666......3333 PP

         SPX 144 sesesssss 152
                 +++ ss + 
  CDO70728.1 255 AAAASSAPA 263
                 333333333 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  19.5    0.0034        12     233     356 ..     167     260 ..     143     283 .. 0.39

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0034
        SOG2 233 rsd.qipfnl.....srsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsntn 324
                 +s+ q+p ++     +   +ss+++ ++++  + +  +t+ +s+ss++ ++++s tP +++s+s+  ++                              
  CDO70728.1 167 TSQwQPPTSTwtppaT---TSSKQHHTTTSTWSPEPEPTTTWSSSSEAEPTTSSWTPSSTWSSSSAwSS------------------------------ 232
                 3333333333332211...11111111111111111222223333333334444444444444332111.............................. PP

        SOG2 325 asastprslattpappasaesfastltasrin 356
                     +p+s+++ ++ ++s++s++s++ a  ++
  CDO70728.1 233 ----PPPSSSSHASSSSSSSSATSSSAAAASS 260
                 ....1111111111111111111111122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.53
# Mc/sec: 1677.75
//
Query:       CDO70729.1  [L=359]
Description: hypothetical protein BN946_scf184798.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   13.4  13.9      0.047   12.9  13.9    1.3  1  Med3      Mediator complex subunit 3 fungal
       0.45   11.1   8.8       0.67   10.5   8.8    1.2  1  SOBP      Sine oculis-binding protein
        1.8    7.0   5.8        2.6    6.5   5.8    1.3  1  Macoilin  Macoilin family
        2.1    6.6   9.0        3.4    5.9   9.0    1.3  1  DUF3827   Domain of unknown function (DUF3827)


Domain annotation for each model (and alignments):
>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  13.9     1e-05     0.047     132     217 ..     104     194 ..      60     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
        Med3 132 askasvvnstpssaastPttt..atPgant.ktaaks...lpapnatatigtptnsaaaaattatttssqakkPrkPrqtkkaaakaaakaq 217
                  s+ sv++s+  ++ +t t++  + P +++ +++ak    ++a  +t ti + +n a+aa  +++  +s+  k +k +++kk aa+aaa a+
  CDO70729.1 104 FSALSVSASSARAILQTGTSStnNSPSSKAaRKHAKRkspVSASPSTGTIASGSNPATAAVPSSSVKTSSKSKKKKAKKAKK-AARAAAPAK 194
                 4455555555555554444320033333221233332112455557889999998777765555444444445578889999.666666665 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.8   0.00015      0.67      85     242 ..     112     283 ..      94     305 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
        SOBP  85 askrsesvspepsksaspsssptssns.skplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkqvkagsskssetkagllqkqqkalpl 182
                  s r+  +  + s+++spss++  +++  k+ +s ++s+ ++a+ s+ + ++v+++++++++++kk++++k k+++   ++ ++ +a+ l+    + p+
  CDO70729.1 112 SSARAILQTGTSSTNNSPSSKAARKHAkRKSPVSASPSTGTIASGSNPATAAVPSSSVKTSSKSKKKKAKKAKKAARAAAPAKRASAEGLG----ERPI 206
                 3444444455556788888887744440445556666666777777777777777777777777888888888888777788888777777....6777 PP

        SOBP 183 saeleessvpkpflrpppsiqe.lqsslpnqslpkiapppk.................ppstlappsngaerppfspl 242
                   +++e  + +p++ +pp + e  qs +++  ++++ ++ +                 p++ + ++s++    +f+ l
  CDO70729.1 207 VDDVSEAGLEYPTVYVPPAVYEsAQSYVSSVIAAAPSTKSSgaklaflqalivelglyPSQSTLTASSSS-PSSFFSL 283
                 7788777788888888887777344444444444344443366666777777777776555555555553.3334333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.8   0.00057       2.6     304     380 ..     111     190 ..      92     297 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00057
    Macoilin 304 sgsesellveesvkskssssssssnknskkasagsagssnssskkhse.ssksvtsss..ssknskkqklpaGkssaalk 380
                  +s+  +l+++ ++ ++s+ss+++ k+ k++s  sa+ s+ + ++ s+ ++  v+sss  +s++skk+k+   k++a+  
  CDO70729.1 111 ASSARAILQTGTSSTNNSPSSKAARKHAKRKSPVSASPSTGTIASGSNpATAAVPSSSvkTSSKSKKKKAKKAKKAARAA 190
                 44445555555555556666666555555554444433333322222202222333332222223333333223222222 PP

>> DUF3827  Domain of unknown function (DUF3827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.0   0.00076       3.4     347     430 ..     109     200 ..      82     218 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00076
     DUF3827 347 aslseekevktdksks.....ssKkaksaerrkgrrspSdedsvvsdesskresaeess.qrvtatqkegKeetrkrkvg....gvdeqlssas 430
                 +s+s+ + + + +++s     ssK+a+  ++rk  +s S    +++  s+   +a +ss  +++ + k++K  ++k+k++    +  ++ s++ 
  CDO70729.1 109 VSASSARAILQTGTSStnnspSSKAARKHAKRKSPVSASPSTGTIASGSNPATAAVPSSsVKTSSKSKKKK--AKKAKKAaraaAPAKRASAEG 200
                 55666666666555443333356888888888876666666444444444444444444033333333333..333333222333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1224  (0.0682693); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 1936.39
//
Query:       CDO70730.1  [L=540]
Description: hypothetical protein BN946_scf184798.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-24   84.7   8.4    1.6e-08   35.0   0.0    8.2  8  RCC1      Regulator of chromosome condensation (RCC1) repeat
    4.6e-12   45.4   7.5    9.1e-05   22.2   0.1    5.7  5  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0025        22       6      46 ..      23      63 ..      21      67 .. 0.79
   2 ?    1.1   0.8     0.072   6.5e+02       2      13 ..      71      82 ..      70      86 .. 0.86
   3 !    8.4   0.0   0.00038       3.4      35      50 .]     173     188 ..     160     188 .. 0.80
   4 ?    1.9   0.0     0.038   3.4e+02      10      19 ..     204     213 ..     203     249 .. 0.67
   5 ?    0.0   0.0      0.15   1.4e+03      29      49 ..     291     311 ..     289     311 .. 0.90
   6 !   35.0   0.0   1.8e-12   1.6e-08       2      49 ..     316     372 ..     315     372 .. 0.86
   7 !    9.3   0.0   0.00019       1.7       4      34 ..     387     418 ..     386     432 .. 0.80
   8 !   17.5   0.3   5.4e-07    0.0048       6      35 ..     466     495 ..     463     535 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0025
                EEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEETTE CS
        RCC1  6 sWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacGddh 46
                 WG n ++ L     esv vPt  e++++    + a    h
  CDO70730.1 23 VWGANKMHVLEDDLPESVRVPTPSEWFDNVALRDLALHEKH 63
                7***********************99987655555555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.072
                TEEEEEE--GGG CS
        RCC1  2 GrVysWGrndyG 13
                G+Vy WG + +G
  CDO70730.1 71 GDVYQWGDGFFG 82
                9******98665 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00038
                 S-EEEEEEETTEEEEE CS
        RCC1  35 nrvvkvacGddhtval 50 
                 +r+v++++G dh +al
  CDO70730.1 173 RRFVQISAGTDHMLAL 188
                 49**********9997 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.038
                 -GGGTTSSSS CS
        RCC1  10 ndyGqLGlgt 19 
                 n++GqLG  +
  CDO70730.1 204 NSHGQLGFRK 213
                 99*****833 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.15
                 -GGGTTS-EEEEEEETTEEEE CS
        RCC1  29 veglsgnrvvkvacGddhtva 49 
                 ++ l+g +v  +a G++ ++a
  CDO70730.1 291 IPALRGVKVDRIATGGRSSFA 311
                 8889999**********9997 PP

  == domain 6  score: 35.0 bits;  conditional E-value: 1.8e-12
                 TEEEEEE--GGGTTSSSS-...--EEEEEE-GGGTTS......-EEEEEEETTEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt...esvlvPtkveglsgn......rvvkvacGddhtva 49 
                 GrV++WG n+yGq Glg +   e  +vPt+v + +++        v+v++G+d t++
  CDO70730.1 316 GRVLGWGANEYGQIGLGANvtlEAITVPTEVILWRATpatvrtTCVDVFAGGDLTMF 372
                 9******************877777******666665666678***********986 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00019
                 EEEEE--GGGTTSSSS-.--EEEEEE-GGGTT CS
        RCC1   4 VysWGrndyGqLGlgtt.esvlvPtkveglsg 34 
                 ++s+G++++G LG+    + +++P++ ++ sg
  CDO70730.1 387 ILSCGNGQWGGLGNALYsNAQSTPVRAKNVSG 418
                 78************665466688998877665 PP

  == domain 8  score: 17.5 bits;  conditional E-value: 5.4e-07
                 EEE--GGGTTSSSS---EEEEEE-GGGTTS CS
        RCC1   6 sWGrndyGqLGlgttesvlvPtkveglsgn 35 
                  WG n ++qLG+g++ s ++Pt +++++g+
  CDO70730.1 466 VWGANFDYQLGNGKRGSLPTPTVLQTPEGE 495
                 6**************************998 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.2    0.0036        32      10      29 ..      63      82 ..      62      83 .. 0.90
   2 ?   -0.3   0.0      0.11     1e+03      12      21 ..     112     121 ..     108     123 .. 0.85
   3 !   15.9   0.0     9e-07    0.0081       2      19 ..     176     193 ..     175     199 .. 0.94
   4 !   22.2   0.1     1e-08   9.1e-05       3      30 .]     301     328 ..     299     328 .. 0.95
   5 ?    1.3   0.1     0.036   3.3e+02      19      30 .]     463     474 ..     449     474 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0036
      RCC1_2 10 HscaLtedGeVlcWGsNsdG 29
                H+  +++ G+V+ WG+  +G
  CDO70730.1 63 HAACVDARGDVYQWGDGFFG 82
                889999**********8877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.11
      RCC1_2  12 caLtedGeVl 21 
                 +aL+++G+++
  CDO70730.1 112 FALSASGRIY 121
                 79******98 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 9e-07
      RCC1_2   2 ksvsaGdyHscaLtedGe 19 
                 +++saG +H +aLt++G+
  CDO70730.1 176 VQISAGTDHMLALTSEGR 193
                 89**************97 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 1e-08
      RCC1_2   3 svsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                  ++ G++ s+a t++G+Vl+WG N++GQ
  CDO70730.1 301 RIATGGRSSFAKTTTGRVLGWGANEYGQ 328
                 599************************9 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.036
      RCC1_2  19 eVlcWGsNsdGQ 30 
                 +V+ WG N d Q
  CDO70730.1 463 DVVVWGANFDYQ 474
                 59******8877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 3357.66
//
Query:       CDO70731.1  [L=269]
Description: hypothetical protein BN946_scf184798.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1995.54
//
Query:       CDO70732.1  [L=194]
Description: hypothetical protein BN946_scf184798.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   13.7   0.1      0.057   13.2   0.1    1.4  1  DSBA      DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.2e-06     0.057     103     143 ..     106     146 ..      31     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHH CS
        DSBA 103 ekvvrelfealwsegqaitddqellevaekaGldaeeldea 143
                 +++v +    l++e++  t++q+l+eva++ G+d+++l+++
  CDO70732.1 106 NHLVAASLLDLLEERKYATTPQVLQEVAKNYGMDVDKLERL 146
                 55666666678999**********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1413.85
//
Query:       CDO70733.1  [L=562]
Description: hypothetical protein BN946_scf184798.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-83  279.1   0.0    6.6e-83  278.7   0.0    1.1  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.7   0.0   3.7e-87   6.6e-83       1     305 [.      23     312 ..      23     314 .. 0.95

  Alignments for each domain:
  == domain 1  score: 278.7 bits;  conditional E-value: 3.7e-87
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp++p+R++ i+++l   +++l++++ + ++++at e ++++H++eY+++l++++ e  ++ +       ++ + l+ +d+p+++++++ +++++g
     CDO70733.1  23 HPMKPQRMR-ITHELLTVYDMLPKMH-VLRAKRATAETMTRFHTDEYVHFLSKVTPENAQQLTY------QGTRFLVGEDNPAFDGVFEFCSISAG 110
                    89*******.999999999***9866.69**************************998888733......3333478899**************** PP

                    HHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTT CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyP 191
                    ++++a++++++g  +++++++  ++ HHak++easGFC++N++++ai ++ +   ++rv+++D+D HhG+G+eeafy +++v+t+S+H++++ ++P
     CDO70733.1 111 GSIAAAQRLMNG--QTDIAINwAGGLHHAKKREASGFCYINDIVLAILEMLR--TVPRVLYIDIDCHHGDGVEEAFYTTDRVMTCSFHKFGE-YFP 201
                    **********99..9**********************************988..699********************************865.9** PP

                    SS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.EEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 192 gtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkvvlll 287
                    gtg+l+d g+gkg+g++lnvpl++g++de y +vf+ ++ ++le ++P++i++++G+D+l+gd+lg lnl+++g++++++++++      +++ll+
     CDO70733.1 202 GTGTLDDRGRGKGRGYALNVPLKDGITDEAYKSVFQPVIDKILEVYQPSAIVLQCGADSLSGDKLGCLNLTMQGHASCVQYIRTKNI---PLLLLG 294
                    **********************************************************************************98775...9***** PP

                    -S---HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 288 eGGYnlealaravtavls 305
                    +GGY+ +++ar +t+ ++
     CDO70733.1 295 GGGYTVKNVARTWTYETA 312
                    *************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3983.53
//
Query:       CDO70734.1  [L=1294]
Description: hypothetical protein BN946_scf184798.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-25   86.3   0.0    1.4e-12   47.2   0.0    2.5  2  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
      5e-22   76.3   0.0    3.1e-05   23.4   0.0    5.7  5  PUF            Pumilio-family RNA binding repeat
    0.00053   19.8   0.0        1.3    8.9   0.0    2.5  2  RRM_occluded   Occluded RNA-recognition motif
  ------ inclusion threshold ------
       0.22   11.0   0.0        1.5    8.2   0.0    2.0  2  Nab6_mRNP_bdg  RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   7.1e-13   3.2e-09       1      58 [.     452     504 ..     452     509 .. 0.96
   2 !   47.2   0.0   3.2e-16   1.4e-12       1      67 [.     576     637 ..     576     639 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 7.1e-13
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlea 58 
                 l++gnL ++ t e+L  +F ++G i+s++l ++     k ++fV+F +  dA +A++ 
  CDO70734.1 452 LWIGNLDSSFTSEQLIHVFAPYGAIESLRLLPE-----KECGFVNFVDMADAIRAKDD 504
                 79******************************8.....*****************985 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 3.2e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                 l++g +p+++t  ++  +Fs++Gpi+s+++ +     +k+++f++Fe  +dA +A +alng+ + g+
  CDO70734.1 576 LWIGSIPSTTTPATILSVFSPYGPIESARVLT-----HKNCGFINFERLDDAVRARKALNGRDVLGS 637
                 79******************************.....6***********************998775 PP

>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.8e-07    0.0026       2      28 ..     815     841 ..     814     844 .. 0.93
   2 !    5.7   0.0    0.0029        13      10      26 ..     859     876 ..     851     881 .. 0.80
   3 !   23.4   0.0   6.8e-09   3.1e-05       3      32 ..     889     917 ..     888     920 .. 0.80
   4 !   13.5   0.0   9.9e-06     0.044       2      33 ..     923     955 ..     922     957 .. 0.90
   5 !    8.7   0.0   0.00032       1.5       3      29 ..     962     989 ..     960     994 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-07
                 HGGGHHHHHTSTTHHHHHHHHHHHSCH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehate 28 
                 ++g++v+L++d  Gn vvQkl+e++++
  CDO70734.1 815 LDGEIVDLASDWLGNTVVQKLFEKCSP 841
                 6799********************986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0029
                 HTSTTHHHHHHHHHHH.S CS
         PUF  10 stdqyGnyvvQklleh.a 26 
                  ++++G+++ Qk++e+  
  CDO70734.1 859 GIHKNGTWAAQKIIECvQ 876
                 68*************744 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 6.8e-09
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkk 32 
                 ++++  L  dq+GnyvvQ++l   + + ++
  CDO70734.1 889 RPYVPPLLLDQFGNYVVQCCLRF-GAPATD 917
                 689999***************94.444444 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 9.9e-06
                 HGGGHHHHHTSTTHHHHHHHHHHH.SCHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh.ateeqkkl 33 
                 + ++l+++++ ++G++ ++ +le  + ++++++
  CDO70734.1 923 MVDRLWEIAQGRFGARSMRACLESsHITVNQQR 955
                 6789*******************9999998886 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00032
                 GGGHHHHHTSTTHHHHHHHHHHH.SCHH CS
         PUF   3 kgnlvqLstdqyGnyvvQklleh.atee 29 
                 + n + L+t+++G+ ++ +ll++ + ++
  CDO70734.1 962 ILNSIPLATNPNGALLLTWLLDTsNFPS 989
                 667889****************966555 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00046       2.1       6      53 ..     454     500 ..     449     502 .. 0.85
   2 !    8.9   0.0    0.0003       1.3       6      63 ..     578     634 ..     573     645 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00046
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagk 53 
                   + +l    +++++ +++ ++ g+i+ + L p++e+ +v f d ++a +
    CDO70734.1 454 IGNLDSSFTSEQLIHVFAPY-GAIESLRLLPEKECGFVNFVDMADAIR 500
                   5667777788999999****.*********************999955 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0003
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsef 63 
                   +  ++ t + a i ++++++ g+i+   + + +++ ++ f+   +a +a  aL+g + 
    CDO70734.1 578 IGSIPSTTTPATILSVFSPY-GPIESARVLTHKNCGFINFERLDDAVRARKALNGRDV 634
                   557999**************.*****************************99999765 PP

>> Nab6_mRNP_bdg  RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00034       1.5      15      53 ..     449     487 ..     441     509 .. 0.89
   2 ?   -0.1   0.0      0.12   5.2e+02      15      53 ..     573     611 ..     570     623 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00034
  Nab6_mRNP_bdg  15 tRSLLfeNvnesidlhsfvkkfvkynpvESvYlikdedt 53 
                    tRSL + N+++s    ++++ f+ y+ +ES+ l+++++ 
     CDO70734.1 449 TRSLWIGNLDSSFTSEQLIHVFAPYGAIESLRLLPEKEC 487
                    9********************************999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
  Nab6_mRNP_bdg  15 tRSLLfeNvnesidlhsfvkkfvkynpvESvYlikdedt 53 
                    tR+L +  + ++    ++++ f+ y+p+ES  ++ +++ 
     CDO70734.1 573 TRALWIGSIPSTTTPATILSVFSPYGPIESARVLTHKNC 611
                    8999999999999999***************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 8228.81
//
Query:       CDO70735.1  [L=1001]
Description: hypothetical protein BN946_scf184798.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 6914.08
//
Query:       CDO70736.1  [L=240]
Description: hypothetical protein BN946_scf184798.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-08   35.2   0.1    1.2e-08   35.2   0.1    3.3  3  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.015   2.7e+02       1       9 [.      83      91 ..      83      91 .. 0.95
   2 !   35.2   0.1   6.6e-13   1.2e-08      28      73 ..      91     135 ..      89     136 .. 0.93
   3 ?   -3.4   4.3      0.76   1.4e+04      19      50 ..     189     222 ..     154     229 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.015
  Linker_histone  1 hpsykdMik 9 
                    hp++kdMik
      CDO70736.1 83 HPPWKDMIK 91
                    9*******7 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 6.6e-13
  Linker_histone  28 kyikakykvv.dvskfksllkkalkkgvekgelvqpkgkGasGsfKL 73 
                     k++++ky v  +++ ++s+l++a+ +g+e+g+++ pk  G+sG++KL
      CDO70736.1  91 KFVSEKYGVDaSMALNSSHLNRAIMNGAEEGIFTLPK--GLSGKVKL 135
                     9*******97777778*********************..*******9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.76
  Linker_histone  19 kGsSrqaI..kkyikakykvvdvskfksllkkal 50 
                     k +S ++I  kk  +ak   ++++k+ks  k+a 
      CDO70736.1 189 KKTSSTKIaeKKKTAAKTAATKATKAKSTTKSAA 222
                     3344444411333333333336666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2183  (0.121758); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.52
# Mc/sec: 1381.02
//
Query:       CDO70737.1  [L=530]
Description: hypothetical protein BN946_scf184798.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-16   60.9   0.3    5.9e-14   52.4   0.1    3.2  3  RNA_pol_Rpc82  RNA polymerase III subunit RPC82
    1.4e-14   53.9   0.1    1.1e-11   44.6   0.1    3.4  4  HTH_9          RNA polymerase III subunit RPC82 helix-turn-he
    1.9e-11   43.8   0.1    4.7e-06   26.4   0.0    4.1  4  TFIIE_alpha    TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc82  RNA polymerase III subunit RPC82
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15   8.7e+02     118     140 ..       8      30 ..       7      34 .. 0.91
   2 !    4.5   0.0    0.0043        26     104     141 ..      76     113 ..      49     133 .. 0.89
   3 !   52.4   0.1     1e-17   5.9e-14       2     230 ..     141     321 ..     140     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.15
                    HHHHHHHHHHS-SHHHHHHHHHH CS
  RNA_pol_Rpc82 118 eaLvqlaksrigettaevyeaaL 140
                    + ++++++s  g  ta+v+ ++L
     CDO70737.1   8 RLCAEIVRSVFGPLTATVASVLL 30 
                    57999***************999 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0043
                    EEE-SHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHH CS
  RNA_pol_Rpc82 104 lriNlerflvhlRdeaLvqlaksrigettaevyeaaLk 141
                       N++ +l +lR  + v la++ +g++ ae+++++L 
     CDO70737.1  76 FEMNIDECLMRLRYGRYVWLAERLYGKSGAEIVQLVLD 113
                    578*******************************9996 PP

  == domain 3  score: 52.4 bits;  conditional E-value: 1e-17
                    HHHHHHTTSSEEESSSTTTS-HHHHHHHHHHHTHTTSSSSSSSSTHHHHHHHHHHHHHHHHHHHHHHHSGT....T..TTCETSSSSSEE...... CS
  RNA_pol_Rpc82   2 sfvkLveagflqrvpslhfrpiedlwnalyeeelkktprssttseikkkaeakekiktelrdlresseslkkkegrstadstsngtarKrrketea 97 
                    ++ kLve+g+l++ + l   ++ d   ++++ee +k+    + ++  +++eake+++++l++  e+ e+                  rK+ +e+  
     CDO70737.1 141 TLHKLVEEGYLKPSTVLSHFSPRDKLIQYEAEEKRKIS---GFPTAREVREAKEVAVARLKREEEEAEQIG---------------MRKAVEEELE 218
                    7889**********998888888888889999888885...777777777777666666665555555544...............5677778999 PP

                    E-TSSEEEE-SHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHTSTSS-GSS-TTSHHHHHHTTTCSCSSTHHHH-STT-------.....--- CS
  RNA_pol_Rpc82  98 ldpglvlriNlerflvhlRdeaLvqlaksrigettaevyeaaLklleersprlsadllleeedkksitftandiaralpksldlsksi.....gKr 188
                    +d++++ r+N erf+ h R++ + + a++r  e ++ v++a Lk +e ++ +ls+         +s + ++  +a +lp ++dl+ ++     +K 
     CDO70737.1 219 VDDKVYFRVNCERFNIHIRNKLIETTACERFNECAGAVLRATLKATEFKQRKLSDV--------RSDPTSFASVAMHLPDDVDLAAGLvlqssKK- 305
                    ********************************************************........9**********************75544222. PP

                    -----------------------------HHHHHHHHHHHHH CS
  RNA_pol_Rpc82 189 kssnssaaekkklkteeseeeseengqarlslieqhLklLas 230
                                              q +++li+ +L +Las
     CDO70737.1 306 --------------------------QPTMTLIKEYLGILAS 321
                    ..........................2345555555555555 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   1.9e-15   1.1e-11       2      57 ..       9      64 ..       8      68 .. 0.97
   2 !    4.8   0.0    0.0052        31       4      35 ..      93     124 ..      91     132 .. 0.86
   3 ?   -2.4   0.0      0.89   5.3e+03       5      16 ..     310     321 ..     309     322 .. 0.84
   4 ?   -1.6   0.0      0.52   3.1e+03      12      51 ..     367     406 ..     358     413 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.9e-15
                HHHHHHHHCSTTHHHHHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHHHHTTSE CS
       HTH_9  2 lcteiieehFGevvakVvetLlrkgrltlrelvkktkLsldqVkksLvvLiqhrlV 57
                lc ei+++ FG + a+V+++Ll +grl   +l+++++L ++ V+ +  +L+qh+l 
  CDO70737.1  9 LCAEIVRSVFGPLTATVASVLLTHGRLGFPQLLRFSRLKPRTVRAAILILVQHNLL 64
                9*****************************************************85 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0052
                 HHHHHHCSTTHHHHHHHHHHHHSSBEHHHHHH CS
       HTH_9   4 teiieehFGevvakVvetLlrkgrltlrelvk 35 
                 + ++e ++G+  a +v++ l++g+l   +++ 
  CDO70737.1  93 VWLAERLYGKSGAEIVQLVLDHGKLRPPDIIA 124
                 66899******************998777765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.89
                 HHHHHCSTTHHH CS
       HTH_9   5 eiieehFGevva 16 
                 ++i+e++G +++
  CDO70737.1 310 TLIKEYLGILAS 321
                 699*****9887 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.52
                 TTHHHHHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHH CS
       HTH_9  12 GevvakVvetLlrkgrltlrelvkktkLsldqVkksLvvL 51 
                 G+   +++++L ++g    ++++k   + ++ V+  L+++
  CDO70737.1 367 GDEGVRIIRLLSDTGMMDEKQISKIGMMAPKDVRPLLSAM 406
                 5555677777777777777888877778888888888877 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00018       1.1       2      66 ..       9      73 ..       8      80 .. 0.90
   2 ?    0.2   0.0      0.11   6.9e+02       7      38 ..      96     127 ..      93     151 .. 0.81
   3 ?    1.8   0.1     0.037   2.2e+02      53      91 ..     203     242 ..     190     246 .. 0.81
   4 !   26.4   0.0   7.9e-10   4.7e-06       2      97 ..     357     455 ..     356     463 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00018
                 HHHHHHHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEETT CS
  TFIIE_alpha  2 llkevvrkfygeeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrdee 66
                 l +e+vr ++g   + v  vLl++g +   +l +  ++++  +r ++  L +  l    ++ de+
   CDO70737.1  9 LCAEIVRSVFGPLTATVASVLLTHGRLGFPQLLRFSRLKPRTVRAAILILVQHNLLWHAQSDDEG 73
                 889***********************************************999998777666665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
                  HHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHT CS
  TFIIE_alpha   7 vrkfygeeavlvldvLlekgevteedlakelk 38 
                  + + yg++ +++++ +l +g++   d+  + +
   CDO70737.1  96 AERLYGKSGAEIVQLVLDHGKLRPPDIIAQAS 127
                  67899***************999888766655 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.037
                  HCTSEEEEEEEETTTEEE.EEEEEEECCCHCCCHHHHHHH CS
  TFIIE_alpha  53 earlvkykrrrdeekswy.kyywrinyeklvdvvkrklee 91 
                  ea  + ++++++ee ++  k+y+r+n e+    +++kl e
   CDO70737.1 203 EAEQIGMRKAVEEELEVDdKVYFRVNCERFNIHIRNKLIE 242
                  56678899999999998538999***99998888888765 PP

  == domain 4  score: 26.4 bits;  conditional E-value: 7.9e-10
                  HHHHHHHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEE...EEEETTTEEEEEEEEEECCCHCCCHHHHHHHHHHHH CS
  TFIIE_alpha   2 llkevvrkfygeeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkyk...rrrdeekswykyywrinyeklvdvvkrkleevvkkL 96 
                  +l+ v+r+  g+e v ++  L   g + e +++k   + ++ +r+lL ++  + lv+ +   ++ d + + + y w+++ +k+  v  r l +++ ++
   CDO70737.1 357 VLEAVARERHGDEGVRIIRLLSDTGMMDEKQISKIGMMAPKDVRPLLSAMSAESLVSLQevpKSADRNPTRMFYLWYVDLQKASAVQVRNLYKTLYNI 454
                  6889****************************************************98733367889999999**********999777777776666 PP

                  H CS
  TFIIE_alpha  97 e 97 
                   
   CDO70737.1 455 A 455
                  5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.35s 00:00:01.08 Elapsed: 00:00:00.55
# Mc/sec: 2891.34
//
Query:       CDO70738.1  [L=733]
Description: hypothetical protein BN946_scf184798.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.56
# Mc/sec: 3973.79
//
Query:       CDO70739.1  [L=570]
Description: hypothetical protein BN946_scf184798.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-18   65.6   0.0    7.1e-18   64.4   0.0    1.5  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   3.9e-22   7.1e-18      20     412 ..      97     564 ..      85     565 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 3.9e-22
                  TEEEEHHHHHHHHHHHHHHHH.HTTSSTT-E.EEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHS CS
  AMP-binding  20 gqtlTYreldervnrlAagLr.slGvkkgdr.VaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaa 115
                   +++T  el+erv +++agL+  +G+ +++  V++ll  ++e+++a+la+++ ++   +    ++   l+ +le+  ++++i  ++++ l +lle+  
   CDO70739.1  97 STKITNPELRERVANIGAGLMrLAGLAPQESnVLLLLNDGIEFLLADLALASSSIPSFT---LSSLSLLSTVLENHPPSAII--TQADFLTQLLEHVY 189
                  4689999**************878**766655********************9865555...567778999***********..77777777777777 PP

                  CC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS..........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH..HHHCSCCTT CS
  AMP-binding 116 kleavklvivldadellkeeelkeeeeseekae..........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk..letrfklke 201
                  +  ++   +++  ++++   +l+  ++ + +            ++   + ++p+++ ++ +     G   GV+l+h+nl+a va+    +++   +++
   CDO70739.1 190 DINESNNHTIIVVGDIDSL-KLPRLNNIKIVPWddleregasvEKAALPVPDPNEVFTVSFFETPSGGYEGVQLTHQNLTAGVAATRalMPPSNAISP 286
                  7666665555555555443.3343333333331345678899944466689**********999999***************9998898998888899 PP

                  T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CH.HHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH.C....HHHHC............ CS
  AMP-binding 202 ddvvlsilplahifglilelllallsGatvvllpkdaa.ld.pklllelieklkvtviagvPrvleallesgalk.a....akkak............ 280
                   d+++s  +l+  +g  +  ++al+ G     ++ ++   + ++  l  +++l+ t  + +P+    +++ ++l+          +            
   CDO70739.1 287 LDTIISAYSLSTPYGR-TIAYTALFEGTGFATVDSTKLiKRdDAPSLTGLKDLRTTANYRTPSPTILFVRPDHLDsLstsiL---Heakrsswllhnl 380
                  ***************6.*************999999997445888899****************999988555553344442...0233456777777 PP

                  ...................................CGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSEC.EE................ CS
  AMP-binding 281 ...................................dlsslrlvllggeplspellrffralfgeevlegYGlTEttgvv.tv................ 326
                                                       + +r v++ g+pl++++l+ +r  +  +v+++      +g v +                 
   CDO70739.1 381 awrhklanilegfitkqslwdrlvfdsarvkvmgqGAGTVRAVIVSGGPLEAQALTPARIALSVPVINAHSHPLVAGPVfAShaldlqtfptsnaaps 478
                  77777777777777777777777777777776664444599999******************999999877554444442225778888899999999 PP

                  ..CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE..EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEE CS
  AMP-binding 327 ..lpleedkkklgsvGkplpgvevkivDeetgepvpdgee..GellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGylei 412
                    + +    ++l  vG+p  +ve+k+   +    v+ g    G l+vrgp+v +    ++e  +e +    +w  TG  +++ ++G++++
   CDO70739.1 479 psAADAYAFTYLAPVGPPSVNVEAKLTGLD-DAAVEAGADpiGALHVRGPSVGRPLSAEEEPEEEELR---GWRATGERAKVAPNGTFKV 564
                  99555666678888************9555.45666666556*****************999999997...6**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3671.27
//
Query:       CDO70740.1  [L=1066]
Description: hypothetical protein BN946_scf184798.g55, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-58  195.8   1.6    5.3e-58  195.5   0.2    2.0  2  SPT16            FACT complex subunit (SPT16/CDC68)
      3e-40  137.6   0.6    1.8e-39  135.1   0.0    2.7  3  FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe d
    1.5e-26   93.4   0.0    2.3e-26   92.8   0.0    1.3  1  Peptidase_M24    Metallopeptidase family M24
    6.7e-15   55.3   0.0    2.6e-14   53.4   0.0    2.1  1  Rtt106           Histone chaperone Rttp106-like
  ------ inclusion threshold ------
      0.088   13.0   0.0       0.17   12.1   0.0    1.4  1  DUF3956          Protein of unknown function (DUF3956)


Domain annotation for each model (and alignments):
>> SPT16  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.2   1.5e-61   5.3e-58       1     151 []     563     713 ..     563     713 .. 1.00
   2 ?   -3.4   0.1       2.7   9.5e+03      87     103 ..     802     818 ..     763     851 .. 0.56

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 1.5e-61
       SPT16   1 iyvdkkketillPifGiavPFhistiknvskseegdytylrinFnvpgsavgkkeealfknpeaifikeltfrskdekklqevfreikelkkkvkkrea 99 
                 i+vd+k++t++lP++G avPFhi+tiknvsk++eg++tylr+nF++pg+ +g+ke+++f+ p+a+fi+++t+rs d+++++ + ++i++lkk+v+kre+
  CDO70740.1 563 IFVDRKAQTVILPVYGFAVPFHINTIKNVSKNDEGEFTYLRVNFQTPGQLAGRKEDTPFEDPDATFIRSITYRSADAHRFDAISKQITDLKKEVNKREQ 661
                 89*********************************************************99************************************** PP

       SPT16 100 ekkekedlveqekLilskskrkprLkdlyirpniegkklaGtleaheNGlRy 151
                 +kke++d++eq++L++ k++r+++L++++irp+++gk+l G++e+h+NGlRy
  CDO70740.1 662 QKKEMADVIEQDTLVEIKGRRPTKLPEVFIRPALDGKRLPGEVEIHQNGLRY 713
                 ***************************************************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
       SPT16  87 ikelkkkvkkreaekke 103
                  + l+k++k   ++ +e
  CDO70740.1 802 RQMLNKEFKLFSEKIAE 818
                 22334444444444444 PP

>> FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0     5e-43   1.8e-39       1     160 [.       6     168 ..       6     169 .. 0.95
   2 ?   -2.1   0.0      0.83     3e+03      94     126 ..     329     361 ..     316     374 .. 0.71
   3 ?   -2.8   0.2       1.3   4.8e+03      77     132 ..     427     479 ..     422     512 .. 0.49

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 5e-43
                      --HHHHHHHHHHHHHHHHSHHHHH....STT-SEEEEEE-S-.-TT----HHHHHHHHHHSS--SSEEEEEESSEEEEEEEHHHHHTTGGGCTS CS
  FACT-Spt16_Nlob   1 idkkafkkRlkklysawkeeeedk....fssvdallvvlGks.deenpykKstalqtWLlGyefpdtlilltkkkiviltskkKaklLeplkek 89 
                      ++++ f+kRl+ +y+aw++ ++d     +s+vdall+++G++  e++p++K  a+qtWLlG+efp+t++++ k ++ il+s++Kak+L++lk++
       CDO70740.1   6 LNSELFFKRLRLVYDAWNNAQKDDdyssISEVDALLLLSGDHaAEDEPIRKGIAFQTWLLGFEFPSTFLMFQKTQLSILCSASKAKILSQLKNA 99 
                      6899**************6666656799*************9889************************************************* PP

                      TT-.SSEEEEEEE-S-HHHHHHHHHHHHHHHHTTTSEEEE-TT----SHHHHHHHHHHCCCGGG.EEEE-HH CS
  FACT-Spt16_Nlob  90 keeekvevellvreKdadenkknfeklieaikeagkkvGvlaKdkseGkfveewkkalkeakke.eevDvsa 160
                       +   v++e+ v++K ++  ++++ +++e++++   +v++l+K++++Gk+++ew++a+++a k+ ++vD+++
       CDO70740.1 100 DSP--VPIEFYVQAKAKEPPTDALPRFLETYTSLD-RVATLTKEQHSGKLMDEWNQAVSNAPKKpTLVDMAP 168
                      976..**********9999*************997.*********************************987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.83
                      SSEEEEEEE-S-HHHHHHHHHHHHHHHHTTTSE CS
  FACT-Spt16_Nlob  94 kvevellvreKdadenkknfeklieaikeagkk 126
                      +++ e+l r K+ +  k++++  ++ +ke++ +
       CDO70740.1 329 SLQSEILSRMKEGAVSKELYQFALSYVKEKKPE 361
                      456788889998888888888888888888733 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
                      HHHHHTTGGGCTSTT-.SSEEEEEEE-S-HHHHHHHHHHHHHHHHTTTSEEEE-TT CS
  FACT-Spt16_Nlob  77 kkKaklLeplkekkeeekvevellvreKdadenkknfeklieaikeagkkvGvlaK 132
                      + Ka+ L++  ++ ++   ++ +l ++ d+ + +k+ +k + a k+  +  +   K
       CDO70740.1 427 ADKATCLTTGVKALKD---TMFFLNQDEDEGQSSKAPAKKLPAAKNGANGNASPVK 479
                      5555555555555543...4444444444444444333333333333333333333 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   6.5e-30   2.3e-26       2     207 ..     184     425 ..     183     427 .. 0.81

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 6.5e-30
                    HHHHHHHHHHHHHHHHHHHHHT..........TCBHHHHHHHHHHHHHHHTT.........................TCEESSSSEEEEGGGGGS. CS
  Peptidase_M24   2 lirkaariasaaleavleaikp..........gvterelaaeieattlkrhg.........................arglafppivasgenaav. 61 
                     +r aa+++s  l++    i p          +++++  aa ie + +   g                         a++ ++ppi++s   +   
     CDO70740.1 184 YMRTAANLTSTLLAHY---IAPkletildreaKISHETFAAQIEGR-I-GYGegdkakgpdmkvwskgrglnevdweATEFCYPPIIQSPSTSTGy 274
                    5899999999999988...334222233333467888888888876.3.2223466666888888888899999999999********87777632 PP

                    ...TTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHT..TBCCGBSSC CS
  Peptidase_M24  62 ...lhytpndrvlkegdlvlidagaeydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesa..glakffphg 152
                       + ++ +++++  + +vl+ +g +y++y+++ +r ++v+ +++eq+ +y ++   q ++++ +k+G+  +e+++ a  +++++  +l+++f ++
     CDO70740.1 275 dlsPTAESSQDDISHKGVVLVSVGMRYKNYCANLGRSFIVD-PSKEQEAIYSLLVSLQSEILSRMKEGAVSKELYQFALSYVKEKkpELESHFVKN 369
                    2224445577889***************************6.8889999**********************************8767899****** PP

                    SEEEESSSSSEEEEEESSSTTCSSB--TTBEEEEEEEEEEET..TTE.EEEEBEEEEE CS
  Peptidase_M24 153 lGHgvGlevhdegpsvsresndgrkleeGmvftiEpgiyfap..geg.gvriedtvlv 207
                    +GHg+G+e++d  +++ + ++++rkl  +m+f++  g+   +  g++ + ++ dtv+v
     CDO70740.1 370 IGHGMGMEFRDA-SYLIS-PKNSRKLHTNMTFNLVLGFTGLEegGKKyALQLVDTVVV 425
                    ***********9.99664.788**************999554446656*********9 PP

>> Rtt106  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   7.1e-18   2.6e-14       3      87 ..     842     926 ..     840     928 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 7.1e-18
      Rtt106   3 VkasrkakeGlLyflekgllfgfkkPllfiplediesvsfeRvsvtsrtfdlvvelkk...eeveFsmidqeelegidefvkskgiki 87 
                 V+++    ++ L++++++l+++ + P+l+++l+die++s+eRv++  ++fd+v+ +k+    ++++++i+ ++l+ ++++++s +i  
  CDO70740.1 842 VPFR---TNVRLQPTTECLVHLSDPPFLVVTLSDIEIASLERVQFGLKQFDMVLIFKDftkPPLHINSIPSAQLDDVKNWLDSVDIPL 926
                 5666...7899*********************************************767779*********************99975 PP

>> DUF3956  Protein of unknown function (DUF3956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.8e-05      0.17       4      27 ..     856     879 ..     854     886 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
     DUF3956   4 CvlFvnGqPlLvlsvAGiEiARLE 27 
                 C +     P+Lv+ +  iEiA LE
  CDO70740.1 856 CLVHLSDPPFLVVTLSDIEIASLE 879
                 99999999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1393  (0.0776954); expected 358.6 (0.02)
Passed bias filter:                      790  (0.0440627); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.46
# Mc/sec: 6961.57
//
Query:       CDO70741.1  [L=941]
Description: hypothetical protein BN946_scf184798.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 5932.53
//
Query:       CDO70742.1  [L=454]
Description: hypothetical protein BN946_scf184798.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.005   17.6   0.3        1.6    9.6   0.0    2.9  3  PriA_C    Primosomal protein N C-terminal domain
     0.0096   14.1   0.1       0.27    9.4   0.1    2.0  2  EzrA      Septation ring formation regulator, EzrA


Domain annotation for each model (and alignments):
>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.81   7.3e+03      36      56 ..     106     126 ..      84     128 .. 0.65
   2 !    5.1   0.6    0.0047        42      27      88 ..     172     234 ..     148     241 .. 0.71
   3 !    9.6   0.0   0.00018       1.6      36      81 ..     243     288 ..     227     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.81
      PriA_C  36 eeveilgpapapiakikgryr 56 
                 ++ ++  p+ a ++++  r++
  CDO70742.1 106 STSRVSNPTVAELERLMTRFH 126
                 334689999999999988875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0047
      PriA_C  27 ellkealkleeveilgpapapiakikgryryqillksksrkalqkllkellekleklk..kvrv 88 
                 + l + +kl   + ++p++a ++ i+g  r+ ++   ++ + + + +k l++++ k++  k r+
  CDO70742.1 172 KRLANIEKL-CAQAWQPSKAQMKLIRGLIRHYLIQPIPNYNGIADQVKILRQRYIKKNpdKFRL 234
                 233332222.2359********************999999999999999998887665566665 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00018
      PriA_C  36 eeveilgpapapiakikgryryqillksksrkalqkllkellekle 81 
                  +v++ g +   ia +k  +r  ++  +k+r+ l ++ ++++++++
  CDO70742.1 243 VQVTVNGHISDLIAQMKSTFRKAVFTACKNRTSLDSFARNMVDNYH 288
                 457899***********************************99984 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1     3e-05      0.27     313     390 ..     102     183 ..      95     198 .. 0.84
   2 !    2.5   0.0    0.0035        31     402     464 ..     255     318 ..     248     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 3e-05
                 HHHHT--HHHHTTGGG-TTTS-GGGSSTT..TSTTHHHH..HHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHH CS
        EzrA 313 eklehlekqnkelkeeldrlkqsYeLsee..eleklrel..ekelkelekdyeeleekleekkvaYSelqeeleeleeklee 390
                 + l+ + + ++ + +el+rl  +++L+++  ++ +++el  +++l+++   + +lee ++++ + Y el+++l ++e+ +++
  CDO70742.1 102 QSLSSTSRVSNPTVAELERLMTRFHLEHRrsDVYRFQELasDAKLSTIFVHILQLEETHAARRTEYIELTKRLANIEKLCAQ 183
                 678888999999***************9722566777772246799******************************998776 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH.SSS-SS-S-TTTHHHHSTTTSTTTHHHHHHHT-TT CS
        EzrA 402 lkslrkdEkrAreqldeikkelkeikrk.ieksnLPgiPesyleelkeasdeieelakeLekkp 464
                 ++++++  ++A  ++ + ++ l +  r+ +++++LP iP+++   +  +  +++++a+ L k+p
  CDO70742.1 255 IAQMKSTFRKAVFTACKNRTSLDSFARNmVDNYHLPAIPAEIPLSILGTLAMMRRVADPLTKRP 318
                 5666666666666666666667666554279***********9999999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.34s 00:00:01.00 Elapsed: 00:00:00.54
# Mc/sec: 2539.79
//
Query:       CDO70743.1  [L=327]
Description: hypothetical protein BN946_scf184798.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-20   74.1   0.0    5.2e-16   59.1   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.1e-14   54.3   0.0    2.2e-14   53.3   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    2.2e-14   54.6   0.0    2.7e-14   54.3   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0016   18.3   0.0      0.012   15.4   0.0    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold
     0.0076   16.1   0.0      0.029   14.2   0.0    1.8  1  Palm_thioest   Palmitoyl protein thioesterase
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.024   14.7   0.0    1.5  1  Abhydrolase_4  TAP-like protein
      0.033   14.3   0.0      0.082   13.0   0.0    1.6  2  Thioesterase   Thioesterase domain
      0.039   12.7   0.0      0.057   12.1   0.0    1.2  1  Ndr            Ndr family
      0.052   13.0   0.0          2    7.9   0.0    2.4  2  Peptidase_S9   Prolyl oligopeptidase family
      0.095   12.6   0.0       0.24   11.3   0.0    1.6  2  UPF0227        Uncharacterised protein family (UPF0227)
       0.14   11.7   0.0         12    5.4   0.0    2.1  2  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   3.2e-19   5.2e-16       3     106 ..      61     162 ..      60     194 .. 0.91
   2 !   13.1   0.0   3.3e-05     0.054     206     252 ..     244     301 ..     196     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 3.2e-19
                    EEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTS...SEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldrildalgdd...kltlvGhSmGGmialayaaey 94 
                    +v++ Gl  ss  w     ++++a++ ++ v+++D rGvg S ++  +    y+t  +add+  +ld  g++   ++++vG S+GGmia ++a + 
     CDO70743.1  61 VVFIMGLNSSSSGWLP--QVEHFARKpEYSVLVFDNRGVGNSGTPRGP----YSTSGMADDVVVLLDYIGWKeprQIHVVGVSLGGMIAQELAKKI 150
                    89**************..****************************75....******************9744479******************* PP

                    GGGEEEEEEESE CS
  Abhydrolase_1  95 perVkalvllga 106
                    per+ +l+l+ +
     CDO70743.1 151 PERIVSLTLVVT 162
                    *********999 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.3e-05
                    C........THHHHS...EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 206 e........lknvla...ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                    +        l+++++   ++ ++ g++D+lv+p+++  l+++ p+++l+v  +agH +
     CDO70743.1 244 IthytspdkLREISStipKVTIVTGDTDNLVDPSNSFLLKKHMPEAELIVRKGAGHGI 301
                    033333444556666777**************************************66 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.3e-17   2.2e-14       6     235 ..      60     302 ..      57     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.3e-17
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLa.aqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva 102
                   vv++ Gl+++s+     +e++a + +++v+ +D+rG G+s+  rg   s++ + dD+  +++ +  ++p++ + ++G S+GG+ia++++++ p+++ 
   CDO70743.1  60 KVVFIMGLNSSSSGWLPQVEHFArKPEYSVLVFDNRGVGNSGTPRG-PYSTSGMADDVVVLLDYIGWKEPRQ-IHVVGVSLGGMIAQELAKKIPERIV 155
                  58888999988766666666666267***************88888.999****************999988.99********************887 PP

  Hydrolase_4 103 ..glilsaPalkikakl............k.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrlee 185
                     l+++ P  + + +l              ++   + +  +l  ++pk  + ++ + ds  r +++++     ++++  + ++ + +++ a+ + ++
   CDO70743.1 156 slTLVVTKPGRRRWFELaplagvkglaksMmISDPEQKIPIVLDMIFPKEWLDSKRDGDSQGRTNREIE----YEFTRPPTFLGAISQMVAAITHYTS 249
                  577788888887777766666666666553355555557777888888888899999999999999988....3444555555555555555555555 PP

  Hydrolase_4 186 raakit....lP.llllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                   ++  +    +P + ++ G+ D++vdp++s  l ++++  + +l + +g+ H + 
   CDO70743.1 250 PDKLREisstIPkVTIVTGDTDNLVDPSNSFLLKKHMP--EAELIVRKGAGHGIT 302
                  54444433446679****************99999999..79**********885 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.7e-17   2.7e-14       1     217 [.      61     309 ..      53     312 .. 0.53

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.7e-17
                    EEEE--GC.....GC..HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   1 vlllHGagssassWl..vapLaallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaa.gggpvvlvGHSlGGalalaaapla.... 86 
                    v+++ G+ ss+s+Wl  v ++  ++   + vl++D +G G s +p   ++    ++d++ lld ++   ++++++vG SlGG++a++   la    
     CDO70743.1  61 VVFIMGLNSSSSGWLpqVEHF--ARKPEYSVLVFDNRGVGNSGTPRGPYSTsgmADDVVVLLDYIGWkEPRQIHVVGVSLGGMIAQE---LAkkip 151
                    4556666699****6345566..33333777********8554444444444455666888888877899999**************...666659 PP

                    ...EE.EEES-..----TTT.....S----TTHHHHHHTT-C....CCCHCCHS-HSCCCC.HHH....C..CCCHCHCCCGHHHHCC....HHC. CS
  Abhydrolase_6  87 .lvvg.vlldppptalpagl.....laaalelllallallrl....lawlsreplprlfla.ded....a..daawrarlarlaalla....glg. 159
                     ++v+  l+ + p + +  +     la +  l++  + + +       +++  ++p+++l+ + d        ++  + ++r++ +l     ++  
     CDO70743.1 152 eRIVSlTLVVTKP-GRRR-WfelapLAGVKGLAKSMMISDPEqkipIVLDM--IFPKEWLDsKRDgdsqGrtNREIEYEFTRPPTFLGaisqMVAa 243
                    9777765555522.2222.22222222222222222222222332211111..2333333322222222023344444444444333322221112 PP

                    ...HTTCCHHTT-TTGC...EEE.CTT-CHHH....HCHHCCCHSTTEEETCE...SSS-HHHHSH.HHH CS
  Abhydrolase_6 160 ...llpaaawadlpvpl...lvl.ggeDplvp....rllerllaqagarlpvvlpgaGHlphleep.dev 217
                       + +++ ++ + +++    ++ g++D lv      ll++++  + a+l +v +gaGH + + +  +++
     CDO70743.1 244 ithYTSPDKLREISSTIpkvTIVtGDTDNLVDpsnsFLLKKHM--PEAEL-IVRKGAGHGITM-QYkEWF 309
                    2233346666666666677656657777755522214444444..89999.********8887.665655 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.5e-06     0.012      69     209 ..     127     301 ..     107     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.5e-06
                    TTCEEEEEEETHHHHHHHHHHHHHHHTT---......................................EEEEEEESE..-SSTSSTTSHHHHHCH CS
  Abhydrolase_3  69 dpsrivlaGdSaGGnlaaavalrardegepk......................................vagqvliyP..vtdlertesesikkae 124
                    +p++i ++G S GG +a  +a ++ ++   +                                      +  + +i P  ++d  + +++s+ +++
     CDO70743.1 127 EPRQIHVVGVSLGGMIAQELAKKIPERIV-SltlvvtkpgrrrwfelaplagvkglaksmmisdpeqkiPIVLDMIFPkeWLDS-KRDGDSQGRTN 220
                    699********************999943.2468999999999*****999999988888888877777677777777887777.66677775555 PP

                    HTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGC.S-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 125 eladgplltraaldlfwrlylpeadrddplasplla.edlsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgf 209
                    ++ ++ +  + ++  ++++++  a +++ + sp    e  s +p++++v+++ D l d +  +   l+++  e+eli+ +g+ Hg+
     CDO70743.1 221 REIEYEFTRPPTFLGAISQMV--AAITH-YTSPDKLrEISSTIPKVTIVTGDTDNLVDPSNSF--LLKKHMPEAELIVRKGAGHGI 301
                    555555555555555555544..44544.566664423467799*************999988..588899999999999999987 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-05     0.029       2     202 ..      61     285 ..      60     315 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
  Palm_thioest   2 vviwhGldsaesn.mqklaeliekligtyvknve...igeseaedrkasffgnlndqveavckk..lelangfhaiGfSQGglflRaliercddkkn 92 
                   vv++ Gl+s++s+ + ++++ ++k  + +v + +   +g+s +  r   +++ + d v    +    + ++++h++G+S Gg+++  l+++++++  
    CDO70743.1  61 VVFIMGLNSSSSGwLPQVEHFARKP-EYSVLVFDnrgVGNSGT-PRGPYSTSGMADDVVVLLDYigWKEPRQIHVVGVSLGGMIAQELAKKIPERIV 155
                   8899999777777888888888883.23333333445777776.5555556666666665444445235899*******************976553 PP

  Palm_thioest  93 .vrnlislggpqaGvfgl.............llckvae.kllasgavy.sklvqksl...vqaqywrdpekleeYlkknkFLpdiNnerdha....k 166
                    +  +++  g     f+l             +++   +   ++  +++ +++  ++    +q    r+ e   e+ +  +FL  i +  ++     +
    CDO70743.1 156 sLTLVVTKPGRRR-WFELaplagvkglaksmMISDPEQkIPIVLDMIFpKEWLDSKRdgdSQGRTNREIEY--EFTRPPTFLGAISQMVAAIthytS 249
                   4333333322222.222122222222244443333333323333323335555544322244444444443..788888888888888765544433 PP

  Palm_thioest 167 netykknllkleklvlvgfsdDtvvvPkeSslfgfy 202
                    +++++  +++ k+ +v +++D+ v P++S l++  
    CDO70743.1 250 PDKLREISSTIPKVTIVTGDTDNLVDPSNSFLLKKH 285
                   334445555677777888888888888888776554 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05     0.024      32      96 ..     257     322 ..     239     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
  Abhydrolase_4  32 kga.apvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGel 96 
                     ++ ++v ++++  D+ + ++    l+k +++a+l++++g+GHg   ++++  ++++++ +++G+ 
     CDO70743.1 257 SSTiPKVTIVTGDTDNLVDPSNSFLLKKHMPEAELIVRKGAGHGITMQYKEWFNDLLERVFKEGRE 322
                    334488999***********************************9999999999999998888875 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     5e-05     0.082      58      90 ..     122     153 ..     108     162 .. 0.81
   2 ?   -2.5   0.0       2.7   4.4e+03     198     210 ..     265     277 ..     227     318 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5e-05
                   HHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC CS
  Thioesterase  58 alrqiqpegPyalfGhSlGgllAfevArqLesq 90 
                    + +  p+   +++G SlGg++A+e+A++  ++
    CDO70743.1 122 YIGWKEPR-QIHVVGVSLGGMIAQELAKKIPER 153
                   55566666.789****************97665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.7
                   TCESCEEEEEESS CS
  Thioesterase 198 ktsgevsvhvleg 210
                   +++g+++  v+++
    CDO70743.1 265 IVTGDTDNLVDPS 277
                   2333333333333 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05     0.057      81     144 ..     108     174 ..     102     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
                 -HHHHHTTHHHHHHHHT--...-EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHH CS
         Ndr  81 slddladqllavldhfklk...sviglGvgaGAyilarfalkhperveglvLinitskaagwvewak 144
                 s  ++ad+++++ld++  k   ++  +Gv  G  i    a k per+++l L+ +++  + w e a 
  CDO70743.1 108 STSGMADDVVVLLDYIGWKeprQIHVVGVSLGGMIAQELAKKIPERIVSLTLVVTKPGRRRWFELAP 174
                 56789***********9874446999************************************99875 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.05        82      46      82 ..     114     147 ..      77     153 .. 0.71
   2 ?    7.9   0.0    0.0012         2     133     191 ..     246     304 ..     225     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.05
                   HHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHH CS
  Peptidase_S9  46 dDfiaaaealakegyvdserlaitGgSyGGyltgaal 82 
                   dD++  ++++   g+ +++++ + G S GG+ +  ++
    CDO70743.1 114 DDVVVLLDYI---GWKEPRQIHVVGVSLGGMIAQELA 147
                   5566666665...778899999********9876655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0012
                   HH-CGGG--....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSS CS
  Peptidase_S9 133 pyspldnvk....aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkp 191
                    y+  d+++      p++ +++G++D+ v p++++     L+k+  +++l + +++gHg+ ++
    CDO70743.1 246 HYTSPDKLReissTIPKVTIVTGDTDNLVDPSNSFL----LKKHMPEAELIVRKGAGHGITMQ 304
                   5555555556666789999***************96....56666669**********99864 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.24      56      80 ..     126     150 ..     107     163 .. 0.83
   2 ?   -2.9   0.0       3.3   5.4e+03     138     173 ..     264     302 ..     252     307 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
     UPF0227  56 lgddnillvGssLGGyyatrlgerf 80 
                   +++i +vG+sLGG  a+ l+++ 
  CDO70743.1 126 KEPRQIHVVGVSLGGMIAQELAKKI 150
                 56788***************99875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.3
     UPF0227 138 lvllskqDevldyrrav...aefraaaeiveddgdHafk 173
                  ++ +  D+ +d ++++   ++  +a  iv ++  H+++
  CDO70743.1 264 TIVTGDTDNLVDPSNSFllkKHMPEAELIVRKGAGHGIT 302
                 566667777777766543335677777788888888875 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.016        26      85     120 ..     116     151 ..     102     157 .. 0.83
   2 ?    5.4   0.0    0.0072        12     122     196 ..     240     308 ..     232     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.016
         DLH  85 avaylksvpevstkkvgvvGfCmGGalalllaaevp 120
                  v  l + + +++ ++ vvG  +GG +a +la++ p
  CDO70743.1 116 VVVLLDYIGWKEPRQIHVVGVSLGGMIAQELAKKIP 151
                 566677777788999*****************9875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0072
         DLH 122 vdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsres 196
                 + aa+  Y    + +l e+      + ++ g+ D+ ++ ++   l++ +    +++el v +gagH+ + +++e 
  CDO70743.1 240 MVAAITHYT--SPDKLREISSTIPKVTIVTGDTDNLVDPSNSFLLKKHM----PEAELIVRKGAGHGITMQYKEW 308
                 557777887..3444555555555577889**********988888888....9999**********99988874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2200.07
//
Query:       CDO70744.1  [L=1022]
Description: hypothetical protein BN946_scf184798.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-12   47.3   0.1    1.6e-11   44.6   0.0    2.3  3  Helicase_C  Helicase conserved C-terminal domain
    8.2e-08   32.9   0.8    5.3e-07   30.3   0.8    2.3  1  DUF1998     Domain of unknown function (DUF1998)
    3.6e-06   27.4   0.0    7.3e-06   26.4   0.0    1.5  1  CDT1        DNA replication factor CDT1 like
    4.4e-05   23.3   0.0    9.4e-05   22.2   0.0    1.5  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   9.4e+03       5      29 ..      85     109 ..      83     124 .. 0.77
   2 ?   -1.3   0.0       0.6   2.7e+03      39      57 ..     334     352 ..     315     369 .. 0.80
   3 !   44.6   0.0   3.5e-15   1.6e-11       9     109 ..     493     601 ..     486     603 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
                 HHHHHHHHTTTTSEEEEEESSHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrl 29 
                 ++ +llk  +  +++l f+ +++++
  CDO70744.1  85 YFSNLLKVYKALNTVLAFCSSRKNF 109
                 6677788888889999999999865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.6
                 TTSTEEEESTTSTHHHHHH CS
  Helicase_C  39 kgikvavlhgelpqneree 57 
                 ++ikv +++g++pq+ r  
  CDO70744.1 334 EHIKVSTYDGDTPQELRAG 352
                 3799**********99875 PP

  == domain 3  score: 44.6 bits;  conditional E-value: 3.5e-15
                 HHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SS CS
  Helicase_C   9 llkleeeggkilifvntidrlek.vklllekk.........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rn 96 
                 +l   ++g ++++f++ ++++e  +k l++ +           +v  + g  +q++r++i ++  +g+   ++at+++e G+di  ++ Vi++++p  +
  CDO70744.1 493 FL--MARGVRVILFCKIRKSCELaMKTLRQ-EltadgrldiLERVMSYRGGYSQEDRRKIEREAFSGNLLGIVATNALELGVDIGVLDAVIMLGFPiGG 588
                 43..578999*********99888777733.2367777766689999***************999*******************************777 PP

                 HHHHHHHHTTSSS CS
  Helicase_C  97 vtsyiqriGRtgR 109
                 ++s+ q++GR+gR
  CDO70744.1 589 LASFRQQAGRAGR 601
                 ************* PP

>> DUF1998  Domain of unknown function (DUF1998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.8   1.2e-10   5.3e-07      19      80 ..     873     957 ..     860     962 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.2e-10
     DUF1998  19 dlgteckapedep........................rkrpariliydavpgGaGiaekaaelleellraalelieecdCeeaGCp 80 
                 dl+teck+pe+e                         +    r+++y+ +++  G+a ka+++++++lr a e++e+c+Ce +GC 
  CDO70744.1 873 DLKTECKVPEKEYkasasqrkrparhvqyriarregySLLLLRLIFYEPSGKTGGVAVKAFDHVNDILRDAHERVEACQCE-EGCV 957
                 56666665555445555555556666666666555444556699************************************8.***6 PP

>> CDT1  DNA replication factor CDT1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.6e-09   7.3e-06       2      71 ..      83     153 ..      82     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.6e-09
        CDT1   2 PskYevLlelFkaldtivsmlenrke.titfakvkkaVermsrksfeekhLaqiktvyPeayklkqekqlk 71 
                 P  +  Ll+++kal+t++++   rk+ +itf  v+ +Ve++++   e++++a++k+++Pe +k+ ++ +++
  CDO70744.1  83 PDYFSNLLKVYKALNTVLAFCSSRKNfAITFPVVRSSVEALLHAPLELEKVAELKALLPEIVKFAYTPRTE 153
                 667899*************9998876489***********************************9765443 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.1e-08   9.4e-05      80     170 ..     339     433 ..     320     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
                 EEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH......HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD  80 liiggvaardqlskldngvdivvgtpgrlddll......stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                 +++ g++ ++ ++ ++ ++ +++++ ++l+  +      +++   l++++++ +DE + +    f+ ++ +++++l++ ++       +++ +SAT++
  CDO70744.1 339 STYDGDTPQELRAGIRDTASVIFTNFDMLHASIlphedsWRRF--LKNLKIVAVDELHYYHGI-FGSHVAQVMRRLRRVCAAVGnRRARFVSCSATIS 433
                 4678888888899998889999999999999555976533333..*****************9.************9998887756666*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6999.84
//
Query:       CDO70745.1  [L=681]
Description: hypothetical protein BN946_scf184798.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-17   62.3   0.0    6.9e-17   61.7   0.0    1.2  1  Pkinase      Protein kinase domain
    1.5e-09   37.5   0.0    3.5e-09   36.3   0.0    1.5  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   7.7e-21   6.9e-17      94     264 .]      38     211 ..      23     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 7.7e-21
                 S--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..............BCTTTSCGGGS-HHHHTTSCBSHH CS
     Pkinase  94 slseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk..............ltsfvgtseYlAPEvlkeneyskk 177
                  l+e e++k + q+++gl++lH s+++iH  + pe + i+++g+ K++ +Gl   l++                 l+    + +Y+APE   ++  +++
  CDO70745.1  38 ELDEVEIQKGILQLCKGLSFLHsSARLIHSNINPESVVINSSGDWKLSGLGLTIPLSKADGgpsrwefptfdgraLSYTQRSFDYIAPEYALDEVLDPA 136
                 588999****************7778****************************9999888999**********988899999**************** PP

                 HHHHHHHHHHHHHHH.SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 178 vDvWslGvilyellt.gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +D++slG+++y + + g+ppf+++ + ++v++++ +              l     ++++++ ll+ l+++ p++R+  ++l  hp++
  CDO70745.1 137 SDMYSLGCLIYAVHCkGNPPFKNHGSLNSVRANAGK-------------PLTGMVRLEQDLRALLSALITRHPQTRPNPSDLPLHPFF 211
                 ***********997637999**77777766666655.............455566789*************************99998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.9e-13   3.5e-09     106     254 ..      45     204 ..      34     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.9e-13
                  HHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...........EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr 106 lsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLardiekddey...........vkkeeaklpvkWmapEslkekkftsksDvWsf 191
                   + +lq++kG+++L+s  +l+H ++    v+++++   k+s  GL+  ++k d             ++ + ++ ++ ++apE   ++++  +sD++s 
   CDO70745.1  45 QKGILQLCKGLSFLHSSaRLIHSNINPESVVINSSGDWKLSGLGLTIPLSKADGGpsrwefptfdgRALSYTQRSFDYIAPEYALDEVLDPASDMYSL 142
                  56689*********97626***************************9997766543444555444455566788999********************* PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfse 254
                  G l++ + ++g+ p+++  + + + + ++gk l+     +++l  l++   +++p+ Rp+ s+
   CDO70745.1 143 GCLIYAVHCKGNPPFKNHGSLNSV-RANAGKPLTGMVRLEQDLRALLSALITRHPQTRPNPSD 204
                  ****************99665543.56889999999999*******************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4947.71
//
Query:       CDO70746.1  [L=530]
Description: hypothetical protein BN946_scf184798.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   92.8  20.8    2.6e-14   53.2   5.2    3.7  4  MBOAT_2   Membrane bound O-acyl transferase family


Domain annotation for each model (and alignments):
>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2      0.86   1.5e+04      56      69 ..      72      85 ..      71      89 .. 0.75
   2 !   53.2   5.2   1.4e-18   2.6e-14       1      82 [.     112     190 ..     112     191 .. 0.92
   3 ?    1.2   0.0     0.025   4.5e+02      54      70 ..     368     384 ..     338     395 .. 0.85
   4 !   47.9   1.2     7e-17   1.2e-12       1      82 [.     410     487 ..     410     488 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.86
     MBOAT_2 56 FllSGllHaagdyt 69
                ++lS +lH+   ++
  CDO70746.1 72 YALSTILHISHGLM 85
                68999999876555 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 1.4e-18
     MBOAT_2   1 wpplfgslleayslrrfWgrfWHqlfrrglkstakkilrlllgsklarylqllvaFllSGllHaagdytqlap.estallfFl 82 
                 wpp+ gsllea sl +fW+++WHq fr+ + +++ ++ r   gs    + +++  Fl SGl+H++g ++++++ +   ++fFl
  CDO70746.1 112 WPPICGSLLEARSLHGFWAKAWHQSFRYTFLTLGGFFGRWFAGS----IGMVFGCFLASGLFHEFGLIAAGKElDMRVVVFFL 190
                 9**************************************99999....9***********************74333666776 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.025
     MBOAT_2  54 vaFllSGllHaagdytq 70 
                 + +l+S llH++  +t+
  CDO70746.1 368 TRYLVSTLLHLCTGITV 384
                 6699*******998776 PP

  == domain 4  score: 47.9 bits;  conditional E-value: 7e-17
     MBOAT_2   1 wpplfgslleayslrrfWgrfWHqlfrrglkstakkilrlllgsklarylqllvaFllSGllHaagdytqlapestallfFl 82 
                 wpp+ + + +++sl +fW++ WHq++r  +  ++ ++ r + g     + +l+ +F+ SGl+H++g y  +ap + ++lfF+
  CDO70746.1 410 WPPMHDIPARMTSLHEFWSKGWHQILRDTFLVIGGYPGRWIAGD----VGMLFGTFIASGLFHEVGLYLGGAPFDARVLFFF 487
                 99****************************************98....99***********************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3998.06
//
Query:       CDO70747.1  [L=427]
Description: hypothetical protein BN946_scf184798.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2876.78
//
Query:       CDO70748.1  [L=253]
Description: hypothetical protein BN946_scf184798.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-05   23.6   3.6    0.00051   20.2   3.6    2.4  1  Cytochrom_B561  Eukaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   3.6   2.9e-08   0.00051       2      80 ..      94     172 ..      93     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.9e-08
                     HHHHHHHHHTHHHHHHHTHHHHS-S...-HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHH.HHHHH CS
  Cytochrom_B561   2 HpvlmviGfvllmgeaiLvyrvsstrklskktkkllH.lilqllalilavvgllavfksknekeianlyslHswl.Glvtv 80 
                     Hp+l +++ ++ ++ +iL+ + +s + ++k    + H l++ +l++  +++g la++++k  +e ++++++H+++ G   v
      CDO70748.1  94 HPLLQSLAVSV-FTYGILTLQPTS-QAKTKAAGLIRHqLAILALGVPAIALGTLAIVYRKYLHESPHFTTWHGIIlGAGSV 172
                     99999999776.5899**999533.3344444444452567888899999***********************86144443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1896.72
//
Query:       CDO70749.1  [L=802]
Description: hypothetical protein BN946_scf184798.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-36  124.3   0.1    8.8e-36  123.5   0.1    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    1.7e-30  105.8   0.0    3.6e-30  104.7   0.0    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.1   9.9e-40   8.8e-36       2     158 .]      21     201 ..      20     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 9.9e-40
                    EEEE--SHHHHHHHHHH.......HHTT-EEEEE-SSHHHHHHHHHTT........EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS...HCCC CS
  NAD_binding_2   2 igfiGlGvMGsnmalnl.......lkagykvavynrtkekveelvaeg........akaaesieelvasldvvitmvkagkavdevieg...llea 79 
                    + fiGlG MGs+ma nl        +   + +v + ++e   ++v++         +++a++++e++ + ++v+tm++++++v++v+ +   +++a
     CDO70749.1  21 LSFIGLGRMGSEMAYNLfsrtlveSNGTARFVVCDAREETSHAFVKNFsaqfpgaqVQVATTPAEALLASRTVVTMLPSSPHVRNVYVEeegIVSA 116
                    68***************888887445556789999999999999999678899999*******************************9999*4444 PP

                    -.......-TT-EEEE-S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE-E CS
  NAD_binding_2  80 l.......kkgdilidgstsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthviG 158
                    l       ++++++id++t ++e +r++a++++++g+ ++daPVSGG++gA++GtLs++vGG+eea++ ++p l ++g++++++ G
     CDO70749.1 117 LrslspedARSTLCIDSTTLDVEVARNVAAAVQNTGAAMVDAPVSGGVAGAKAGTLSFLVGGPEEAYKLARPYLLHMGKNIIYC-G 201
                    4444555599***********************************************************************965.6 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0     4e-34   3.6e-30       1     116 [.     204     329 ..     204     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 4e-34
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsna..lenk........lpqrvlsrdfdpgFaldlmlKDlglalela 85 
                     GaG ++K++nnl+l+++ ++++Ea++l++k+Gldp+++  vin+s+g+++a  +  +         ++ + +rd++ gFa++lmlKD+gla++la
      CDO70749.1 204 GAGLVAKICNNLILGVQQIVVGEAMLLGQKLGLDPKVLASVINSSTGACWAsaV--NnpvpgslpDKSPPCERDYEGGFATSLMLKDMGLATDLA 296
                     9**************************************************552..333334432223378************************ PP

  NAD_binding_11  86 reagaplpllalaeqlyaaaaaegg..gdaDhs 116
                     ++ g+plp++++ae++ya + +e+   +++D+s
      CDO70749.1 297 ESTGVPLPMGHAAEKIYADVVSEDPelANKDFS 329
                     *****************9887765523566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5583.96
//
Query:       CDO70750.1  [L=1570]
Description: hypothetical protein BN946_scf184798.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-68  229.5   0.3      4e-68  228.7   0.3    1.4  1  Sec7      Sec7 domain
    9.8e-19   67.8   0.9    1.6e-17   63.8   0.0    3.0  2  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
    0.00013   21.8   0.7       0.74    9.7   0.0    4.3  3  DUF1981   Domain of unknown function (DUF1981)
  ------ inclusion threshold ------
       0.35   10.6   5.0        5.3    6.7   0.3    2.9  2  RIX1      rRNA processing/ribosome biogenesis


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   0.3     9e-72     4e-68       2     183 .]     617     801 ..     616     801 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 9e-72
                 HHHHHHHHHHHHH-HHHHHHHHHHCCCC.....TSSHHHHHHHHHHTCCS-HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-S CS
        Sec7   2 kklleeaaekFnkkpkkgikyliekgll.....eedpksiakflketpgldkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpg 95 
                 kk++ ++a++Fn+kpk+g+++l+e++l+     e+ p s+a+flk++ ++dk+ lG+++++++  n++vl++f++lfdf+g+++ eAlR++l++frlpg
  CDO70750.1 617 KKMVLTGASLFNTKPKNGLAFLEENKLIytdtnEPRPLSLARFLKNSARVDKRLLGDFISRPE--NIDVLRAFMSLFDFRGKNVSEALRELLETFRLPG 713
                 789999**********************8765555599*************************..********************************** PP

                 SHHHHHHHHHHHHHHHHHTTCTCG-SHHHHHHHHHHHHHHHHHHC-TTSCCS--HHHHHHCTTTTBTTB---HHHHHHHHHHHHHS-- CS
        Sec7  96 EaqkierilekFaekyfeqnpevfenadavfvLaysiimLntdlhnpqvkkkmtledFiknnrgindgkdlpeefLeeiYdsIkeeei 183
                 E+q+i+ri e+Fae yf+++pe ++++dav+vL+ysiimLntdlhnpq++k+m+led+++n++g+ndg+d++ e+L +iY+sI+++ei
  CDO70750.1 714 ESQQINRITETFAEVYFATQPEEVRSQDAVYVLTYSIIMLNTDLHNPQIRKRMSLEDYMRNLKGVNDGSDFSTEYLVNIYESIRKREI 801
                 *************************************************************************************998 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   3.6e-21   1.6e-17       6     157 ..     331     528 ..     327     529 .. 0.91
   2 ?   -0.4   1.2      0.21   9.5e+02      60     102 ..    1157    1222 ..    1113    1257 .. 0.47

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 3.6e-21
      Sec7_N   6 flvfrdLcklinsakskpkflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEi 104
                 ++++r L+++++ ++   k  +++  ++ ++L  l+ +++++g+ + + p+l +l+ ++ c+ L++++  s ++ +++ +lr++ ++++ +r +Lk + 
  CDO70750.1 331 LELLRVLINILDPND---K--AHTDSTRSTALRTLNVAIETAGQRICAYPSLSALILDHGCKYLFQLA-RSDHPVILQTALRTIATMFETMRPKLKLQQ 423
                 567777888877555...4..579********************************************.****************************** PP

      Sec7_N 105 evflsllilill..........................................esdssl...........wqrvlaLeilrrlcsdpqllvelylnYD 150
                 e fl + i +l+                                          e ++++             r+l+Le+l ++++++ ++v+ly+nYD
  CDO70750.1 424 ELFLAFTIDRLApptapfaknmplaqraltnsprpsgsvpstphlgptppeldsE-KTPStprllvppargDTRELLLETLCQISRHSSFMVDLYVNYD 521
                 ***********************************************99988531.333356778888999**************************** PP

      Sec7_N 151 cdeeakn 157
                 cd +++n
  CDO70750.1 522 CDMNCEN 528
                 ***9988 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
      Sec7_N   60 llkqklcplLlknls.......................espsfpvferslrivllLlkkfrseLkt 102 
                  ll ++ + +Ll++++                       ++ + +v e ++  ++l+l+++ + + +
  CDO70750.1 1157 LLIERAVVALLRLCQilaerhtlrdqvylafdllarlpPTVASSVAEQVVAGLSLILQQHPDIVRS 1222
                  333344444444444444444444444444444444434445555555555555555555555443 PP

>> DUF1981  Domain of unknown function (DUF1981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00016      0.74      41      65 ..     947     971 ..     941     976 .. 0.89
   2 ?    3.2   0.0     0.018        79      36      69 ..    1117    1150 ..    1114    1163 .. 0.86
   3 ?    3.7   0.0     0.012        56      33      83 ..    1201    1251 ..    1195    1252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
     DUF1981  41 veqliqsraeniksGWktifgvlta 65 
                 + ++++ +a+ ++ GW++if+++++
  CDO70750.1 947 LFNIVNGNANALREGWTQIFEMFQT 971
                 679******************9986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.018
     DUF1981   36 lvlecveqliqsraeniksGWktifgvltaaake 69  
                  ++le + ++ +++ ++i+  W+++f+ l+a  + 
  CDO70750.1 1117 FLLEMMLSIARQTPQHIEEVWPIVFEHLSALLST 1150
                  5789999999****************99988765 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.012
     DUF1981   33 irelvlecveqliqsraeniks..GWktifgvltaaakeeneslvrlafqilk 83  
                  + e v+  ++ ++q++ + ++s   W++if +l+ ++++++    r++f+il+
  CDO70750.1 1201 VAEQVVAGLSLILQQHPDIVRSqtEWNVIFALLRSTISHSE--ASRQSFEILS 1251
                  5566677777777777777755226************7754..5788888875 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.3    0.0012       5.3      95     128 ..     392     425 ..     346     453 .. 0.74
   2 ?    4.5   0.7    0.0056        25      90     183 ..    1143    1239 ..    1132    1244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
        RIX1  95 LekpdppavlelaistlsriftltrgkptltREi 128
                 L ++d p++l++a++t+ ++f+ +r k  l+ E+
  CDO70750.1 392 LARSDHPVILQTALRTIATMFETMRPKLKLQQEL 425
                 666799************************9996 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0056
        RIX1   90 allsiLekp..dppavlelaistlsriftltrgkptltREiltpn.lpkfitallqlleeeletvlealstllplhPttfRpfa..nkirslllsll 181 
                   l ++L+ p   + +++e a+ +l r+++ +++  tl  ++     l + +++ +  +++  e+v+  ls +l++hP ++R+ +  n i +ll+s +
  CDO70750.1 1143 HLSALLSTPaqYSVLLIERAVVALLRLCQILAERHTLRDQVYLAFdLLARLPPTV--ASSVAEQVVAGLSLILQQHPDIVRSQTewNVIFALLRSTI 1237
                  5667777775556899999**********99999999877755422333333333..33338*******************9873344555555555 PP

        RIX1  182 as 183 
                  ++
  CDO70750.1 1238 SH 1239
                  55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.59
# Mc/sec: 7987.73
//
Query:       CDO70751.1  [L=267]
Description: hypothetical protein BN946_scf184798.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-59  200.1   0.0    3.3e-59  199.6   0.0    1.2  1  Proteasome      Proteasome subunit
    2.5e-14   52.6   0.3    1.1e-13   50.6   0.1    2.2  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.0   3.7e-63   3.3e-59       1     189 [.      28     211 ..      28     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 199.6 bits;  conditional E-value: 3.7e-63
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v+kGt++vG++gk+ vvl+++k++    +l++++tv+K+  +ddh+++afaGl+aD+r+l+++ar e+q++rl+ ++p++ve++++++a  +q+ytq++
  CDO70751.1  28 VRKGTCAVGVRGKNVVVLGVEKKSV--LQLQDPRTVRKVAMLDDHVCLAFAGLTADGRVLIDKARIECQSHRLTVEDPVTVEYITRHIAGIQQRYTQSG 124
                 679**********************..************************************************************************ PP

                 TTTTTSEEEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 g+rpfg+s+li+g+d  + +p+Lyq++p G y e+k a aiG  s+ ++++lek+ k+++++ee+++l vk+l e+++   ++ knie++v
  CDO70751.1 125 GVRPFGISTLIVGFDpHDTRPRLYQTEPGGIYSEWK-ANAIGRSSKTVREFLEKNHKDEMSREETIKLTVKSLLEVVQ---TGAKNIEITV 211
                 ***************77789***************8.*****99**********************************...8899999987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.1   1.2e-17   1.1e-13       1      23 []       5      27 ..       5      27 .. 0.99
   2 ?   -1.3   0.0      0.21   1.9e+03      13      18 ..     146     151 ..     146     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.2e-17
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr+lt+FSPdG+LfQVEYA++A
      CDO70751.1  5 YDRALTVFSPDGHLFQVEYALEA 27
                    **********************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.21
  Proteasome_A_N  13 RLfQVE 18 
                     RL+Q E
      CDO70751.1 146 RLYQTE 151
                     9***87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1177  (0.0656478); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.36s 00:00:01.04 Elapsed: 00:00:00.58
# Mc/sec: 1382.17
//
Query:       CDO70752.1  [L=176]
Description: hypothetical protein BN946_scf184798.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.54
# Mc/sec: 975.08
//
Query:       CDO70753.1  [L=419]
Description: hypothetical protein BN946_scf184798.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-39  134.4   0.0    5.4e-39  133.9   0.0    1.2  1  Peptidase_C78  Peptidase family C78
  ------ inclusion threshold ------
       0.15   12.3   0.2       0.15   12.3   0.2    2.6  2  dbPDZ_assoc    Unstructured region between two PDZ domains on


Domain annotation for each model (and alignments):
>> Peptidase_C78  Peptidase family C78
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0     6e-43   5.4e-39      18     186 ..     131     314 ..     115     337 .. 0.87

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 6e-43
                    SS--TTTTHHHHHHHHHHHHHHHTT.S-SS-.......---HHHHHHHHHHTTSSTGG..........GTTSS--B-HHHHHHHHHHH--EEEEEE CS
  Peptidase_C78  18 kledkGwgCgYRnlQmllSwllesk.eeakevlfe...vptipeiQelleeawdkgfdsqgalelgg.ivgsrkwIGttEaaallrslgikckivd 108
                    +  d  wgCgYRn  m +  l+ ++ ++ +  l +    p ++++Q +leeaw++g+d +ga +++  ivg+r+wIGt ++++ ++  gi++++vd
     CDO70753.1 131 EPWDLSWGCGYRNYLMACAALMDQQrQPLYFPLLDsplPPGVRNLQLTLEEAWKHGYDEEGAQQFNYrIVGTREWIGTADIYVAFTYRGIPAQLVD 226
                    555778**************99887345555555589999******************************************************** PP

                    ESSHHHH...HHTHHHHHHHHH.......................HT---EEEE..ETEEEEEEEEE-TTS-EEEEEE--S--SSS-.HHH CS
  Peptidase_C78 109 fkstgeleahaelleevanyFe.............sleesskvlqtnlppiylqhqghsrtivGveirkngelnlLvlDPhftgaeeikkl 186
                    f++ +     + ll+++ nyF              +l+  + v+ t++ pi+lqhqghsrtivG e+ kng +nlL +DP+ + +++i ++
     CDO70753.1 227 FSDLRGG--VEPLLQWIYNYFAagdpqpksttvgeALRGAQAVTVTDKLPIILQHQGHSRTIVGCERVKNGAINLLTFDPSRKIPHNI-RQ 314
                    *998887..799********************999899999***************************************99988874.33 PP

>> dbPDZ_assoc  Unstructured region between two PDZ domains on Dlg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   1.7e-05      0.15      44      74 ..      14      44 ..       1      52 [. 0.83
   2 ?    0.1   1.2      0.11   9.6e+02      12      62 ..     346     397 ..     338     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
  dbPDZ_assoc 44 lseqDeGtmtPpskqttPatspknslRlaae 74
                  seq eG  t   k++tP + +k s++  ++
   CDO70753.1 14 FSEQSEGCTTGEIKESTPKSPTKISFKPISK 44
                 69******************99999986655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
  dbPDZ_assoc  12 sRsssrlesvsnqstpqgsGattPdnhsiidt.lseqDeGtmtPpskqttPa 62 
                  s+    le+   ++ p+   a+ P  + + d  + e D     P++  t Pa
   CDO70753.1 346 SKKRKSLEPLPDETGPKRKRASDPTTRTAEDViVIESDSEDEKPSASTTKPA 397
                  5555678999999999999999999999999625799999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 2364.85
//
Query:       CDO70754.1  [L=287]
Description: hypothetical protein BN946_scf184798.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-60  202.7  11.9    6.3e-60  202.5  11.9    1.0  1  MAT1      CDK-activating kinase assembly factor MAT1
  ------ inclusion threshold ------
       0.39   10.8  13.1       0.56   10.3  13.1    1.2  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus
        9.9    5.3  17.6        4.1    6.5  15.5    1.5  1  DUF1682   Protein of unknown function (DUF1682)


Domain annotation for each model (and alignments):
>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5  11.9     1e-63   6.3e-60       1     203 [.       6     208 ..       6     209 .. 0.95

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 1e-63
        MAT1   1 LRknkFrvQiFeDvevekEvdiRkrvlkifNkkeeDFesLkeYndYLeeveeivfnLtngidveeTekkleqYekenkelIlknkeklkqeeeeleele 99 
                 LRk  F  Q+FeD++vekEv +R+r++k+fNk++eDF++L++YndYLe ve+i fnL+n+idv eTe++++qY++en + I+ n++++++ ++ l+e+e
  CDO70754.1   6 LRKLAFTPQTFEDLGVEKEVAVRRRIAKEFNKRREDFPDLRSYNDYLEMVEDIAFNLINDIDVPETEERIAQYRRENAAIIELNQKREEEYARYLQEQE 104
                 9************************************************************************************************** PP

        MAT1 100 elekeekeekrkeekqeeeeekekkekakeelideLatsskdaeeiiekvkkkakkkkssekekleelnkelkkkatkfssgikfkesllpvpkve.ee 197
                 e+e++e+e +++e+++ eeee+e++ek k+++id+L+ts+kda ++++k++ +a+++ +s++ ++++    l++++++f+s+  +++ +  vp+v  ++
  CDO70754.1 105 EMERQERELRAQELRRLEEEEREEREKGKQAIIDKLETSDKDAARLVAKSRLEAQRR-ASARASSSSGFGMLQSSSSFFRSRAAQSTVVPDVPHVPlQD 202
                 ******************************************************999.55555556668899999999999998888888999999999 PP

        MAT1 198 klypyt 203
                 ++y y+
  CDO70754.1 203 NWYAYD 208
                 999985 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  13.1   9.4e-05      0.56      84     178 ..      35     143 ..       8     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
     UPF0242  84 lktkeealeelqeeeeeLkee............ldakeeelerlkeenqqLqekleaiaedfeelkleleeqLae.kqellqeyqetieeqrsvlek.r 168
                 +++ +e   +l++ ++ L+              + + ee ++++++en+ + e  ++  e+++++++e ee  ++ ++++ qe+++  ee r++ ek +
  CDO70754.1  35 FNKRREDFPDLRSYNDYLEMVediafnlindidVPETEERIAQYRRENAAIIELNQKREEEYARYLQEQEEMERQeRELRAQELRRLEEEEREEREKgK 133
                 3334444444444444444334555555555666678999************99999999********999665415677899***99******99989 PP

     UPF0242 169 qdqieqLesk 178
                 q+ i +Le+ 
  CDO70754.1 134 QAIIDKLETS 143
                 9999***986 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  15.5   0.00069       4.1     191     322 ..       2     131 ..       1     135 [. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00069
     DUF1682 191 agklleyliitDqpskkpetke..serkrlilslrlpssss.dleelspllklv....lrliDklakraklrpevlkklkktReevekklkkeaeeeka 282
                 +gk l+ l++t q+ +    ++  + r+r+  +++   ++  dl + ++ l++v    ++li+ +       pe+ +++ + R e ++ ++ ++  +++
  CDO70754.1   2 CGKILRKLAFTPQTFEDLGVEKevAVRRRIAKEFNKRREDFpDLRSYNDYLEMVediaFNLINDID-V----PETEERIAQYRRENAAIIELNQ--KRE 93 
                 577888888888888543333234456788888887655324555555544443111277777777.4....9999999999998777666333..344 PP

     DUF1682 283 EeaqekkeeekkkereeklaklspeeqrKyeekerkkeak 322
                 Ee +  +  ++++e e++ ++l ++e r++ee er+ ++k
  CDO70754.1  94 EEYA--RYLQEQEEMERQERELRAQELRRLEEEEREEREK 131
                 5555..5556666666666788889999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1987  (0.110826); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 1979.30
//
Query:       CDO70755.1  [L=322]
Description: hypothetical protein BN946_scf184798.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-34  118.8   0.0    2.8e-34  118.4   0.0    1.1  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   1.6e-38   2.8e-34       2     259 ..      34     310 ..      33     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.6e-38
        LigB   2 alllsHvppilaavdgkeqealrekvikg........yesireriaek.sPdtiivvsphhltdvnpvfvlgvaeefeaiddfg...kflprleyelkg 88 
                 a++  H++p+la ++g ++   +   ++g        ++  ++ +  k +P+ i+v+s+h++t      v+  ++e++ + d++   ++l++l+++++g
  CDO70755.1  34 AFFFGHGSPMLAFPEGDAERMGDVMKNNGpkgalanfLKDFGPTLLLKyRPKGIVVFSAHWETLGE-RLVTDYGDENPLLMDYYgfqPALYQLKFKSRG 131
                 78899*****999997766653433344466677777777777777779**************666.6699*************9*9************ PP

        LigB  89 npeLaekiaealkksgidlav............esnsmklDHGtlvPLelmlpde.akvpvikvslntvaypllsferlykLGeAlrkaveeldknvli 174
                 +  L ++++++ k +g  + +             ++  +lDHG++vP++lm+++e   +p ++vs+ +     l++++  +LGe +++++    +++l+
  CDO70755.1 132 DSALSQRVVQLYKDAGYLARTtskleprgqdgrGFEGPGLDHGVFVPFRLMFGEEfTDIPIVEVSIDG----SLDPQKNWALGEVVAPLR---REGILV 223
                 ****************9988889******99999999****************641457888888888....9*****************...9***** PP

        LigB 175 lgsGglsHqlegdeaakadaqtlllneefdeelldllke....grveelckmskeelsaaaghe.eeelvplvvalGalsgdkaelrkel 259
                 l++G l H+l++++ +  +a+ + l +ef + +ld+++     +r + l++++ ++  ++a+h+  +++vpl+v +Ga ++  a++r  +
  CDO70755.1 224 LAGGLLVHNLRDMSSF-SEAHANSLVKEFNQAILDAITIedpsARKKALLELT-KHRGFRAAHPrADHFVPLYVGAGAGGN-DANVRVLS 310
                 **************99.7787999************98777877889999999.77778889******************8.55555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2141.93
//
Query:       CDO70756.1  [L=468]
Description: hypothetical protein BN946_scf184798.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-65  220.6   0.0    2.8e-65  220.3   0.0    1.1  1  Pkinase      Protein kinase domain
    1.1e-30  106.8   0.0    1.5e-30  106.4   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0004   19.8   0.0    0.00069   19.0   0.0    1.3  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   0.0   4.7e-69   2.8e-65       1     264 []     142     401 ..     142     401 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 4.7e-69
                 EEEEEEEEEESSEEEEEEE.....ETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykav.....eketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkg 93 
                 +e++ +lG+G+f++V+ ++     +++t + +A+K+++k ++   ++ ++v +E  il +++hp+iv ly +f+++ ++y+++ yv+ggel+++l+r +
  CDO70756.1 142 FEVKGTLGTGTFARVLLVRprgssSQSTANCFALKVLRKTEIVRLRQvEHVNAERYILSRVRHPFIVDLYATFQDSLNVYMLMSYVPGGELFTHLRRAK 240
                 678899*********9987333224578889*************9999*************************************************** PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyellt 192
                  ++ + +++++++i+ +l+ylHs +ii+rDlKpeN+L+d++g l++tDFG+ak ++ ++   + +gt+eYlAPE++++ +++k++D+W++G+++ye+l 
  CDO70756.1 241 RFTADVTRFYLATIILALKYLHSFNIIYRDLKPENLLLDSRGYLRLTDFGFAKIVDDRT--WTLCGTPEYLAPEIIQSDGHGKAADWWACGILCYEMLV 337
                 ********************************************************976..************************************** PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 g ppf +e+    +ek+l+               +++++++++  kd++k  l+ d++kRl+      +++l+hp++
  CDO70756.1 338 GYPPFFDETPYGIYEKILKG-------------RIHWPNHVDPLSKDIIKAFLHPDRSKRLGnliggTQDVLDHPWF 401
                 ******55555544444444.............789999***********************9*999*********8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   2.5e-34   1.5e-30       3     249 ..     144     384 ..     142     386 .. 0.89

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 2.5e-34
                  EEEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.ekekkevkVavKtlkee..ateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  ++ +lG G+f++V   + +g +++++    a+K+l+++   + ++ e++  e  i+++++hp iv l++   ++ ++++++ yv+gG+L ++Lr+   
   CDO70756.1 144 VKGTLGTGTFARVLLVRPRGsSSQSTANCFALKVLRKTeiVRLRQVEHVNAERYILSRVRHPFIVDLYATFQDSLNVYMLMSYVPGGELFTHLRRA-- 239
                  6779***************95556666667*****6541156677889999********************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +++t + +  + + +  +++yL+s +++ rdl   N Ll+++   +++DfG a+ +  dd+   + +     +++apE++++    +++D W+ G+l+
   CDO70756.1 240 KRFTADVTRFYLATIILALKYLHSFNIIYRDLKPENLLLDSRGYLRLTDFGFAKIV--DDR---TWTLCGTPEYLAPEIIQSDGHGKAADWWACGILC 332
                  888888888899999***************************************99..333...334445679************************* PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +E++  g  p+ + ++  ++ek+ +g r++ p+++ +  ++++k  ++ d ++R
   CDO70756.1 333 YEMLV-GYPPFFDETPYGIYEKILKG-RIHWPNHVDPLSKDIIKAFLHPDRSKR 384
                  ****9.*****************886.8999999999999***99999999998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.1e-07   0.00069     139     288 .]     241     384 ..     226     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-07
  Kinase-like 139 kkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWq 235
                  +  +++ r +l + +i    +L++  ++  +++++nllld +g l l++f+    + ++      +++ +a pE++ s g            + d W+
   CDO70756.1 241 RFTADVTRFYL-ATIILALKYLHSFNIIYRDLKPENLLLDSRGYLRLTDFGFAKIVDDRTWTlCGTPEYLA-PEIIQSDGH---------GKAADWWA 327
                  45678899999.44788889****************************98766555555553266776666.577777454.........4478**** PP

  Kinase-like 236 lGlviyriwclklPltlateeakeewkfklckkipekvkaL....lkkfLqlsqedR 288
                   G+  y +   + P+   t+ ++ e ++k   + p++v  L    +k fL++++ +R
   CDO70756.1 328 CGILCYEMLVGYPPFFDETPYGIYEKILKGRIHWPNHVDPLskdiIKAFLHPDRSKR 384
                  *******************99999977765557777775542222777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 3043.00
//
Query:       CDO70757.1  [L=460]
Description: hypothetical protein BN946_scf184798.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-45  153.0   0.0    1.4e-44  152.5   0.0    1.2  1  Brix      Brix domain
  ------ inclusion threshold ------
        2.5    6.8  18.4        4.8    5.8  18.4    1.5  1  COPI_C    Coatomer (COPI) alpha subunit C-terminus
        2.6    6.3  14.7       0.91    7.8  12.4    1.4  2  eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 
        3.7    6.8  38.7      0.035   13.5  30.2    1.8  3  BUD22     BUD22
        8.2    6.3  20.7         12    5.8  20.7    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit
        9.9    6.0  10.1        7.8    6.3   8.7    1.5  1  CSRNP_N   Cysteine/serine-rich nuclear protein N-terminus


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   4.6e-48   1.4e-44       2     193 .]      35     311 ..      34     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 4.6e-48
                 TT--HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHHHCTC.SEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS...... CS
        Brix   2 rktssrlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellsekndc.slfvfelskkrPngptlefkvenyslmkdlkkak...... 89 
                 +++ss l ql++d+r++m+p+tas+lk r +nkl+d++++     v+hl++++ +  + s+++++l      gptl+f+ve+yslmkd+ +++      
  CDO70757.1  35 QVGSS-LAQLVRDVRKVMEPNTASRLKeRARNKLRDFLTMGPalgVSHLLAFTLTDVApSMRIVRL----SAGPTLSFRVERYSLMKDIINSSkharsi 128
                 67788.*********************8777*********999***********99999*******....******************98887889999 PP

                 .TS-TT---EEEEES.........HHHHHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEE................... CS
        Brix  90 .ktefgsrPllvfng........kenfkllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaikl................... 160
                   +e+ s+Pllv+++         ++++l+++++q++F  p++s+++  ls+ rrvvl++ + n++ + t++fRhY i++                   
  CDO70757.1 129 sTVEYLSPPLLVLASfpppspttPPHLTLMMKTFQSMF--PPLSPQTLSLSSARRVVLIH-Y-NADRG-TVDFRHYLITVkpygvskrirrilegasak 222
                 9*************8888888877888***********..********************.6.45556.9********989999998888888887765 PP

                 ...E..STTTTECT...............................................................T..EEEEEEESEEEEEEEEE CS
        Brix 161 ...kksgkklpnleke.............................................................kkerveLeEiGPrfdLklrk 193
                    ++s+        +                                                             +k++v+L+E+GPr++L+l+k
  CDO70757.1 223 ssaHASS--------HatldlgnekdvadfllrrkgepgpssdgyesaastassvggddadaisladdyvgrnnkkgQKRAVKLDEVGPRMELRLIK 311
                 5553333........033445555888888888888999999999999999999999999******9999999875559****************97 PP

>> COPI_C  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  18.4    0.0016       4.8       6      93 ..     366     453 ..     355     460 .] 0.72

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      COPI_C   6 galaakakasaaaveeeeeeeagagWgddedldleekkeeeededeeeeedeeeggWdvedlelpadldaeaaasaaaesevfvaPtk 93 
                 +al+ak+k++++++ +++ee++++  g+ded  +  ++ee+ d+ ee  e e++g+Wd +++  +++ +a++++s++++++   +P+k
  CDO70757.1 366 AALEAKEKGKESTLGDQDEEDEEDVDGADEDEVMGSEAEERSDDGEEDGEREDDGAWDDDEMISEDEESAGESESESEDEAPRPPPKK 453
                 56788888888888888888888888999988888877777777777789999*****666666666666666666554555555544 PP

>> eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.91   2.7e+03      28      50 ..     111     133 ..     110     135 .. 0.84
   2 ?    7.8  12.4    0.0003      0.91      98     199 ..     330     434 ..     273     456 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.91
                 TTTS-SSTTTTTTT---SSSHHH CS
    eIF-3c_N  28 rfeeltsiiktiknakkikdlvk 50 
                 r+  +++ii+  k+a++i  + +
  CDO70757.1 111 RYSLMKDIINSSKHARSISTVEY 133
                 78899**********99987765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0003
                 XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX..................................... CS
    eIF-3c_N  98 akkklsknnakalntlrQkvkKynk.qfeddikkyredPeeeeeeeeede.deddegedeed.edeksvkateavkkaseskvekeeeedeeteeekls 193
                 +k++ +    ka  + r k++K+ k + e ++++ + + e +e+ +e    d+d+e+e++ d  de++v+ +ea +++ +++++ e e+d+ +++ ++ 
  CDO70757.1 330 KKSQAEIRAQKAEHAAREKLRKQRKeEQERNVQRKKAALEAKEKGKESTLgDQDEEDEEDVDgADEDEVMGSEAEERSDDGEEDGEREDDGAWDDDEMI 428
                 5666667788999***********945566788888887776654444321333333333330455566666666667788888888888888776665 PP

                 ...... CS
    eIF-3c_N 194 kkekke 199
                  ++ + 
  CDO70757.1 429 SEDEES 434
                 554443 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.5   4.6e+03     116     140 ..      32      58 ..      28      67 .. 0.70
   2 ?   -2.7   0.3      0.93   2.8e+03     297     321 ..     270     293 ..     255     295 .. 0.58
   3 ?   13.5  30.2   1.2e-05     0.035     147     277 ..     335     457 ..     310     460 .] 0.40

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
       BUD22 116 nsktvkevveeivesvkkllgiek..k 140
                 ++ +v +++++ v++v+k+++++   +
  CDO70757.1  32 KHGQVGSSLAQLVRDVRKVMEPNTasR 58 
                 667888999999999999999887432 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.93
       BUD22 297 Gsedd.easdaeesvapkRKNRrGQr 321
                 G++d+  +s a++ v   R N++GQ+
  CDO70757.1 270 GGDDAdAISLADDYV--GRNNKKGQK 293
                 444443333333223..499999997 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 1.2e-05
       BUD22 147 ekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddededeyneetdeessees 245
                 e +++k+++++ +k ++++      +ee+e + +++k++ e++e+ +e+  +d+d+e++e+ ++a+e+e+  +++   sdd +ed  + e+d + ++++
  CDO70757.1 335 EIRAQKAEHAAREKLRKQR------KEEQERNVQRKKAALEAKEKGKESTLGDQDEEDEEDVDGADEDEVMGSEAEERSDDGEED-GEREDDGAWDDDE 426
                 2222222222222222222......222222222233444444444444444444444444556666666666664457777777.3333333333333 PP

       BUD22 246 dssdssesasesesessekkkkkkkkkkkkak 277
                   s+++esa eseses+++  + +++kk k+k
  CDO70757.1 427 MISEDEESAGESESESEDE-APRPPPKKLKTK 457
                 3334444433333333333.112222222222 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  20.7    0.0039        12     257     368 ..     336     441 ..     263     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0039
       TFIIA 257 legelsaeeeagaqkeelsreeidrireealkakelekeskkkkraeessla........dlseilqlDGagddsdeeeeeeesdedsdsessddedeq 347
                 +++++++++++++  ++ ++e+ +++   + k+  l    ++k++               d+++   +DGa++d+   +e ee ++d +++ + ++d+ 
  CDO70757.1 336 IRAQKAEHAAREKLRKQRKEEQERNV---QRKKAAL----EAKEK------GkestlgdqDEEDEEDVDGADEDEVMGSEAEERSDDGEEDGEREDDGA 421
                 12222222222222222222222222...1111111....11111......0122233448899999***99999995544444444444444456666 PP

       TFIIA 348 veEDplNSdDDvddeddddlf 368
                  ++D + S+D ++  + +  +
  CDO70757.1 422 WDDDEMISEDEESAGESES-E 441
                 9999999998877655443.3 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.7    0.0026       7.8      39     110 ..     326     397 ..     313     408 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0026
     CSRNP_N  39 hsslkkftlaehaieqkrlrreklrerlkeeklealklklsssdllee.eeeealevddisdedldseaeldd 110
                 h+ +kk   +  a++ +++ reklr+++kee+ ++++ k+   +++e+ +e++  ++d+ ++ed+d  a+ d+
  CDO70757.1 326 HEFVKKSQAEIRAQKAEHAAREKLRKQRKEEQERNVQRKKAALEAKEKgKESTLGDQDEEDEEDVD-GADEDE 397
                 555555555556677778889999999999988888877555554444044455577777777887.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1778  (0.0991689); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 3179.22
//
Query:       CDO70758.1  [L=245]
Description: hypothetical protein BN946_scf184798.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-45  155.3   7.7    2.5e-43  148.8   7.7    2.7  1  Cyto_heme_lyase  Cytochrome c/c1 heme lyase


Domain annotation for each model (and alignments):
>> Cyto_heme_lyase  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   7.7   1.4e-47   2.5e-43      26     290 ..       9     221 ..       1     224 [. 0.77

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 1.4e-47
  Cyto_heme_lyase  26 pseCPmhkkkkskkkkaaseaaakekkkesasacpvkeeeeseeeeeksalsklnplnympselsqerapeqkvdLpteReissiPkgdeeglW 119
                        +CP+++             ++ +++++s+++cpv   +++++++ +s l +     +  +el+++ ap    +Lp++Re+ssiP+ d+  +W
       CDO70758.1   9 ADKCPVDH-------------SSFASSSQSQDTCPV---DHTQRSSWASILGRQSQDGHGAAELPDTPAP--PASLPLDREVSSIPRVDGG-KW 83 
                      44444442.............222334455668888...3344444455555555555666667777666..689************9875.9* PP

  Cyto_heme_lyase 120 eYPspqqmynAmlrKGyedipedavesmvavHnflnEgaWeeileWEkkfakglakgwkkckrgeekveeelekeeePkLlrFqGrpkelsPka 213
                       YPs+ q++ Am rK ++  +e ++  +v +Hn++nE aW+eil+WE+                 +k+          kL+ F+Grp++ +P+a
       CDO70758.1  84 VYPSQAQFFAAMARKNHN-PQERDMRVVVPIHNAVNERAWQEILKWEAGQGG-------------DKC-------GGVKLVSFKGRPNDRTPRA 156
                      ***************865.577889**********************87665.............222.......2469*************** PP

  Cyto_heme_lyase 214 rllqllgklfPskfstelPFDRHDWlvlRkteeeekkevrYviDyYsgpdeet.GepvfllDvRPaldsltaaadRlv 290
                       +++llg+        ++PFDRHDW+v+R+       ++rYviD+Y g   ++  +  f+lDvRPalds +a+  R++
       CDO70758.1 157 WFYSLLGY--------SPPFDRHDWVVDRC-----GSRMRYVIDFYTGSGGSSpKNISFFLDVRPALDSWDAIRLRTQ 221
                      *******9........89************.....4678********997766246679***********99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1701.80
//
Query:       CDO70759.1  [L=353]
Description: hypothetical protein BN946_scf184798.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-56  191.1   0.8    5.3e-56  190.4   0.8    1.3  1  NMO       Nitronate monooxygenase
    6.3e-10   38.6   0.1    1.2e-07   31.1   0.1    2.5  1  IMPDH     IMP dehydrogenase / GMP reductase domain
    0.00037   19.6   3.1    0.00066   18.8   3.1    1.4  1  FMN_dh    FMN-dependent dehydrogenase
  ------ inclusion threshold ------
       0.11   11.7   0.4       0.16   11.1   0.4    1.3  1  DHO_dh    Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.4   0.8   1.2e-59   5.3e-56       2     329 ..      10     333 ..       9     335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 190.4 bits;  conditional E-value: 1.2e-59
         NMO   2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvka.ltdk..Pfgvnlflpkkdaadraekykkeleeaalelnie 97 
                 ++lt l++i +p++ +gm + ++++Laaav naGg+Gv+++  +++  l+++i+++k+ l dk  Pfgv l++p+   + r+ +y              
  CDO70759.1  10 TPLTRLFNITHPIMLAGMNVAAGPKLAAAVTNAGGIGVIGGVRQSPRMLEDNINELKShLEDKnaPFGVDLLIPQVGGNARKTNYD-----------YS 97 
                 6899************************************9999************973667788**********99999954443...........33 PP

         NMO  98 egvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd... 193
                 +g+      ev+ + ++++   ++g+p++e+v++l+ ag+v++ +i+  k++ k+ a+G D++ +qG+e+GGh+G+ +        L+p v+d  +   
  CDO70759.1  98 KGQL-PLLTEVIIKGGAKLFVCAVGVPPREMVDKLHSAGIVVMNMIGHPKHVAKALAQGVDIICAQGGEGGGHTGDTPF-----SILIPAVVDLCKnak 190
                 3333.2223455668899*********************************************************6666.....456666666665666 PP

         NMO 194 .......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleeleeakiatlalpeah 285
                        + v+AaGGi d+rg+aaaL++GAsgv +gtrf++  e++a+++hk+ +l a+ dd+  t   sGrp+ + +t  + + e+ +++ ++l  ++
  CDO70759.1 191 spltgepVIVVAAGGISDGRGLAAALSYGASGVWVGTRFVASVEAGAPKIHKELVLSAGYDDVTRTLIYSGRPMHVRRTPYVASWEQRQQEVAELTAQG 289
                 6999*99999*****************************************************************************999999999999 PP

         NMO 286 elakkiraalveagnteegllwagqgidrldkiisvkeLiesLv 329
                 +   ++          e+ +   g++++++++i ++ke++ ++v
  CDO70759.1 290 KIPHEVELEKHPEKSMEGRMWLMGKVAGSIKDIKPAKEIVDEMV 333
                 99999887777776678888889******************998 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   2.7e-11   1.2e-07      23     249 ..       8     239 ..       2     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.7e-11
                 --EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SS.S-HHHHHHHHHHHHTSTTSXBXTTSXB-EEEEE..-SSTTHHHHHHHHHHTT-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       IMPDH  23 lktkltkkiklniPlvsaamdtvtesemAialareGgigvihkn.lsieeqaeevkkvkrspnaakdekgrllvgaav..gvkedalervkalveagvd 118
                  +t lt+ ++++ P++ a m+  ++ ++A a++++Ggigvi    +s++   ++++++k++ + ++   g  l    v  ++++ + +  k  +    +
  CDO70759.1   8 FSTPLTRLFNITHPIMLAGMNVAAGPKLAAAVTNAGGIGVIGGVrQSPRMLEDNINELKSHLEDKNAPFGVDLLIPQVggNARKTNYDYSKGQLPLLTE 106
                 5899*************************************9762677778889*****7755544444433333333113333444455555556667 PP

                 EEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEE.E-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHH.HHCTCT-EEEEES- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       IMPDH 119 vlvvdsahghsekvleavkeikkkveeveviaGn.vataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevae.aakkagvpviaDGG 215
                 v++   a+     v    +e+ +k+++  +++ n +   + +++ +++g+d++    G G   t  +  ++ +p +  +++ a+   +   v v+a GG
  CDO70759.1 107 VIIKGGAKLFVCAVGVPPREMVDKLHSAGIVVMNmIGHPKHVAKALAQGVDIICAQGGEGGGHTGDTPFSILIPAVVDLCKNAKsPLTGEPVIVVAAGG 205
                 777777777777776666666666666555555526677888888889999999988899989999999999998888887777345556699999999 PP

                 --SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 216 ikysgdivkAlaaGadavmlGsllagteEspgev 249
                 i+  + ++ Al+ Ga+ v +G  + +  E+ + +
  CDO70759.1 206 ISDGRGLAAALSYGASGVWVGTRFVASVEAGAPK 239
                 9999999999999999999999998888886655 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   3.1   1.5e-07   0.00066     223     311 ..     141     237 ..     129     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-07
                 EE-SHHHHHHHHHTTESEEEE--..GGGTSSTT---HHHCH.HHHHHHH..........SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHH CS
      FMN_dh 223 GvltaedakraveaGvdgivvSN..HGGRqldgapatidvL.peiveavgg........rievlvDgGirrGsDvlkAlalGAdavllGRpflyglaag 310
                  + +++ + +a++ Gvd+i       GG+  d+   ++++L p++v+ +++         + v++ gGi+ G   + Al  GA++v++G  f+  + ag
  CDO70759.1 141 MIGHPKHVAKALAQGVDIICAQGgeGGGHTGDT---PFSILiPAVVDLCKNakspltgePVIVVAAGGISDGRGLAAALSYGASGVWVGTRFVASVEAG 236
                 578999999********9987431134444443...34444388888885444455554899******************************9888765 PP

                 H CS
      FMN_dh 311 G 311
                  
  CDO70759.1 237 A 237
                 4 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   3.7e-05      0.16     218     291 ..     166     244 ..     125     247 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.7e-05
                 SEEEEEGGGHHHHHHHHHHHHHH.....TTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHHH CS
      DHO_dh 218 tGGlsGkalkdialkvirelykr.....lkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikkel 291
                 +GG  G    +i +  + +l k+     + + + +++ GGi+ g+     +  GAs v v+t +v +  + a+ki+kel
  CDO70759.1 166 GGGHTGDTPFSILIPAVVDLCKNaksplTGEPVIVVAAGGISDGRGLAAALSYGASGVWVGTRFVASVEAGAPKIHKEL 244
                 555555555555555555555551111134567899*******************************99********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2442.20
//
Query:       CDO70760.1  [L=417]
Description: hypothetical protein BN946_scf184798.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   53.8   8.0    7.5e-06   26.6   0.0    5.7  5  WD40           WD domain, G-beta repeat
     0.0002   20.3   1.1       0.77    8.4   0.0    4.0  5  Nucleoporin_N  Nup133 N terminal like
     0.0013   19.0   0.1       0.33   11.3   0.0    3.0  3  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
  ------ inclusion threshold ------
      0.036   12.7   0.3       0.48    9.0   1.1    2.3  2  Nup160         Nucleoporin Nup120/160
       0.52    9.7   7.2       0.83    9.1   1.5    2.2  2  CAP_N          Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.1e-09   7.5e-06       1      38 []      69     113 ..      69     113 .. 0.91
   2 !   14.7   0.0   1.2e-05     0.042       6      38 .]     122     155 ..     117     155 .. 0.76
   3 ?    0.7   0.0      0.31   1.1e+03       4      37 ..     168     205 ..     165     206 .. 0.66
   4 ?    3.0   0.0     0.058   2.1e+02       4      36 ..     222     253 ..     219     254 .. 0.78
   5 !    7.5   1.3    0.0023       8.2      22      37 ..     353     368 ..     318     369 .. 0.62

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.1e-09
                 TEEEEEEESS.SSEEEEE......EETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla......fspdgawlasGsdDgtvriWd 38 
                 g++l+ ++GH  +vt l        s  g++l+++s+D+t++iWd
  CDO70760.1  69 GKTLQLFKGHtAPVTFLTfvdrepGSGKGDLLVTASWDQTIKIWD 113
                 5778899***88898888888***********************9 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.2e-05
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +  +H ++v +l + p  ++l+s++ D+ +r+Wd
  CDO70760.1 122 STPAHsDFVKALLVIPALRLLVSSGSDKVIRFWD 155
                 55689555898888888899986544*******9 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.31
                 EEEEESS.SSEEEEE...EETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla...fspdgawlasGsdDgtvriW 37 
                 +++lt+H  +v +l    +s+ +a + +++  g +++W
  CDO70760.1 168 VGSLTAHtRPVEALEarvTSDRSAIVYTADTMGIIKVW 205
                 67899996669988666666666666666555666666 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.058
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 l +l+ H + v+++ +   + w +++s D tv++
  CDO70760.1 222 LEELKHHrTRVNAVIYGNGQLW-TASS-DETVHV 253
                 5678889888****87777788.6677.999986 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0023
                 SSEEEEEETTSEEEEE CS
        WD40  22 gawlasGsdDgtvriW 37 
                  +w++s+s Dgt+r W
  CDO70760.1 353 EPWIVSASLDGTIRRW 368
                 467***********88 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.2    0.0033        12     214     277 ..      98     160 ..      88     162 .. 0.61
   2 !    4.0   0.0    0.0046        17     213     241 ..     139     167 ..     119     177 .. 0.82
   3 !    8.4   0.0   0.00021      0.77     208     251 ..     185     228 ..     170     248 .. 0.68
   4 ?   -0.9   0.0      0.15   5.3e+02     222     245 ..     304     326 ..     298     353 .. 0.69
   5 ?   -1.4   0.0       0.2   7.3e+02     215     231 ..     355     371 ..     346     373 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0033
                    CEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH....HHSCHTTTCGCTTT-EEEEEEES- CS
  Nucleoporin_N 214 rilytlsskgvirvydlsasngesslksdidirqillea...itesliasaplaskslkildispvs 277
                     +l+t+s + +i+++d++     +++ s++   +++++a   i++     ++ ++k ++++d+s v+
     CDO70760.1  98 DLLVTASWDQTIKIWDVQ----TKEIISSTPAHSDFVKAllvIPALRLLVSSGSDKVIRFWDLSTVT 160
                    688899999999999999....445555555555555554434444444455666666666666555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0046
                    TCEEEEEETTSEEEEEEEETTCEE-EEEE CS
  Nucleoporin_N 213 rrilytlsskgvirvydlsasngesslks 241
                     r+l++  s++vir++dls+  +++ l+s
     CDO70760.1 139 LRLLVSSGSDKVIRFWDLSTVTNGQPLTS 167
                    4899999************9999888876 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00021
                    EEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHH CS
  Nucleoporin_N 208 ridssrrilytlsskgvirvydlsasngesslksdidirqille 251
                    + ++ + i+yt+++ g i+v+++ ++ g + + +++ +++  ++
     CDO70760.1 185 VTSDRSAIVYTADTMGIIKVWEVKKDDGTPPRWQSTLLEELKHH 228
                    3334449*****************88876666555554444444 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.15
                    TSEEEEEEEETTCEE-EEEEEEEH CS
  Nucleoporin_N 222 kgvirvydlsasngesslksdidi 245
                    + vir+yd+s++ +e++l s++d 
     CDO70760.1 304 GDVIRAYDVSSP-DEPELLSEVDA 326
                    568*******65.67888777765 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.2
                    EEEEEETTSEEEEEEEE CS
  Nucleoporin_N 215 ilytlsskgvirvydls 231
                    +++++s +g+ir+++l 
     CDO70760.1 355 WIVSASLDGTIRRWRLA 371
                    899***********986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.013        47      43      89 ..      42      87 ..       9      90 .. 0.78
   2 !   11.3   0.0   9.2e-05      0.33      49      81 ..      96     128 ..      94     163 .. 0.92
   3 ?   -1.8   0.0       1.1     4e+03      52      73 ..     232     251 ..     183     259 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
  ANAPC4_WD40 43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89
                 +La +  +++  +a + + vr ld e+gk+++ ++ ++   vt l++
   CDO70760.1 42 ALAIEVRDNVAWIAENTTVVRKLDLETGKTLQLFKGHTA-PVTFLTF 87
                 5666777777788888899999*********99999988.4888887 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.2e-05
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +g lL+ a  d ++++ d++++++++s +++s+
   CDO70760.1  96 KGDLLVTASWDQTIKIWDVQTKEIISSTPAHSD 128
                  799**************************9998 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvv 73 
                  + av y +g+  l  a+s ++v
   CDO70760.1 232 VNAVIYGNGQ--LWTASSDETV 251
                  3344444443..3444444444 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.1   0.00013      0.48     231     255 ..      98     122 ..      86     214 .. 0.83
   2 ?   -3.0   0.0      0.57   2.1e+03     233     249 ..     356     372 ..     347     399 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00013
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                 ++l+++s d+++++W+++t+ ++++
  CDO70760.1  98 DLLVTASWDQTIKIWDVQTKEIISS 122
                 6899*****************9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.57
                 EEEEETT-EEEEEETTT CS
      Nup160 233 lfalsrdgkLrvWnllt 249
                 ++++s+dg++r W l+ 
  CDO70760.1 356 IVSASLDGTIRRWRLAE 372
                 78999999999997765 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5   0.00023      0.83     185     256 ..     206     277 ..     201     290 .. 0.69
   2 ?    3.7   0.4      0.01        37     252     276 ..     376     401 ..     364     403 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00023
                 HHTTT-HHHHHHHHHHHHHHHHHHHHHHH.HSTTS----TTSBE.......SSC--XXXXXXX....XXXXXX CS
       CAP_N 185 eykekdkkhveWvksflqilkeLqaYvke.yhttGltWnkkGkdaeealkaaaaaasaaaaggpppPpPpPpp 256
                 e+k+ d +   W +++l+ lk  ++ v+   + +G  W ++  +  +++ + a+a++a ++g+   ++PpPp 
  CDO70760.1 206 EVKKDDGTPPRWQSTLLEELKHHRTRVNAvIYGNGQLWTASSDETVHVIPHPAPAPAAETQGA-TTSKPPPPI 277
                 667777777778888777777777777763589******999999999887777776666666.333333331 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.01
                 XXXXXXX......XXXXXXXXXXXXX CS
       CAP_N 252 PpPppasvf.eeesaaasasaaaggm 276
                 PpPppa  + ee++++ +++++++gm
  CDO70760.1 376 PPPPPAIKKeEEKQEEVQEAKPSTGM 401
                 44444443324444455555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3064.04
//
Query:       CDO70761.1  [L=232]
Description: hypothetical protein BN946_scf184798.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   13.6   3.6        3.7    7.2   1.1    2.2  2  Med4      Vitamin-D-receptor interacting Mediator subunit 4
       0.57   10.0   1.7        1.2    9.0   0.4    2.2  3  Lsm_C     Lsm C-terminal


Domain annotation for each model (and alignments):
>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00053       4.8      19      63 ..      34      82 ..      30     102 .. 0.82
   2 ?    7.2   1.1   0.00041       3.7      27      63 ..     103     139 ..      96     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00053
        Med4 19 keleehqknearilqLraeveslDekike....ivksLkeyekeLkavp 63
                +el++h   + ++l+Lr+ + + De ++e     v+sL +++ eL +++
  CDO70761.1 34 SELPHHRTLRSQLLELRNVAYEWDERVSEqglkAVSSLIDARTELDNEL 82
                689*********************9997533337999999999999887 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00041
        Med4  27 nearilqLraeveslDekikeivksLkeyekeLkavp 63 
                  e ri++L + +  lD+  +++vk +k++e  L++v 
  CDO70761.1 103 MESRIEELHEVIRRLDKLFQKMVKIIKSLEVLLHEVH 139
                 588******************************9986 PP

>> Lsm_C  Lsm C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.6   5.3e+03      35      41 ..      59      65 ..      57      68 .. 0.85
   2 ?    9.0   0.4   0.00013       1.2       2      27 ..     108     133 ..     107     138 .. 0.90
   3 ?   -1.9   0.0      0.33     3e+03      13      27 ..     184     198 ..     176     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.6
                EEETTEE CS
       Lsm_C 35 kVsekGV 41
                +Vse+G 
  CDO70761.1 59 RVSEQGL 65
                8***997 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHS...TTTEEEETTTTE CS
       Lsm_C   2 reFaelvekelnlrpglVkvieeanv 27 
                 +e+ e++ +  +l++++Vk+i+  +v
  CDO70761.1 108 EELHEVIRRLDKLFQKMVKIIKSLEV 133
                 799******************98777 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.33
                 ...TTTEEEETTTTE CS
       Lsm_C  13 nlrpglVkvieeanv 27 
                 +lrp++V   e   +
  CDO70761.1 184 QLRPHDVTFEESRHI 198
                 689999975444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1801.44
//
Query:       CDO70762.1  [L=1004]
Description: hypothetical protein BN946_scf184798.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-08   34.0  22.6       0.31   12.0   0.1   12.6 13  TPR_14        Tetratricopeptide repeat
    4.3e-07   30.4   4.3        1.1    9.8   0.1    6.7  6  TPR_19        Tetratricopeptide repeat
    1.9e-06   28.1   8.6    5.2e-05   23.4   3.0    4.6  4  Suf           Suppressor of forked protein (Suf)
    3.5e-05   23.8   7.7          3    7.8   0.3    6.4  7  Mad3_BUB1_I   Mad3/BUB1 homology region 1
    7.5e-05   22.9  10.3      0.018   15.3   0.0    5.5  5  TPR_12        Tetratricopeptide repeat
    0.00018   21.5  11.5        3.3    8.1   0.2    7.8  6  TPR_8         Tetratricopeptide repeat
     0.0011   18.7   1.7        2.5    8.1   0.0    4.9  4  TPR_1         Tetratricopeptide repeat
     0.0016   18.4  17.6      0.076   13.2   0.1    7.8  9  TPR_2         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.051   12.7  15.2        1.3    8.1   0.1    5.7  6  NRDE-2        NRDE-2, necessary for RNA interference
      0.057   13.4   0.0       0.15   12.1   0.0    1.8  1  DUF627        Protein of unknown function (DUF627)
       0.09   12.9   1.2        2.6    8.2   0.0    3.8  3  MIT           MIT (microtubule interacting and transport) dom
       0.19   11.8   4.8         17    5.7   0.0    5.1  6  TPR_7         Tetratricopeptide repeat
        0.3   11.5   6.5    2.2e+02    2.6   0.0    6.8  8  TPR_17        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.27   3.8e+02      23      43 ..     104     124 ..      93     125 .. 0.83
   2 ?    1.9   0.1      0.39   5.4e+02      18      41 ..     216     241 ..     214     247 .. 0.76
   3 ?   -0.8   0.0       2.9   4.1e+03      21      34 ..     254     267 ..     250     275 .. 0.83
   4 ?    3.3   0.0      0.13   1.8e+02       3      29 ..     419     445 ..     418     452 .. 0.90
   5 ?   -0.6   0.0       2.5   3.4e+03      20      41 ..     559     580 ..     555     586 .. 0.71
   6 ?    3.6   0.0      0.11   1.5e+02      13      43 ..     598     632 ..     580     633 .. 0.73
   7 !   12.0   0.1   0.00022      0.31       2      31 ..     625     653 ..     624     662 .. 0.83
   8 ?    2.3   0.0       0.3   4.1e+02       3      30 ..     678     705 ..     676     713 .. 0.89
   9 ?    5.8   0.0     0.021        29       7      42 ..     716     754 ..     710     756 .. 0.78
  10 ?   -0.4   0.0       2.1   2.9e+03      19      32 ..     767     780 ..     761     782 .. 0.86
  11 ?    2.6   0.1      0.24   3.3e+02       4      28 ..     788     812 ..     786     831 .. 0.83
  12 ?   -1.2   0.0       3.8   5.3e+03      22      34 ..     842     854 ..     826     862 .. 0.79
  13 ?    2.7   0.1      0.21   2.9e+02       8      30 ..     864     886 ..     857     899 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.27
      TPR_14  23 llrralalaPddaeawlllaq 43 
                 l+++al ++P++  +w  + q
  CDO70762.1 104 LYEAALTQFPTSFKLWKSYLQ 124
                 89**********999987665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.39
      TPR_14  18 deAiallrralalaP..ddaeawlll 41 
                   A++ ++ral++ P   + ++w ++
  CDO70762.1 216 THARRTFDRALRTLPpsLHSRIWVRY 241
                 679*********99844345777655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.9
      TPR_14  21 iallrralalaPdd 34 
                 +a++rr+la +P+ 
  CDO70762.1 254 VAVYRRYLAVDPSV 267
                 689*******9975 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.13
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 ++  la +   +G++d+A   ++r la
  CDO70762.1 419 LWTGLATYWIKRGEFDRAKLTFERGLA 445
                 6788999999************99987 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 2.5
      TPR_14  20 AiallrralalaPddaeawlll 41 
                 A+++++++   +P  a+a+l+ 
  CDO70762.1 559 AETYAQALATINPRRATANLHR 580
                 445555555579*999999875 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.11
      TPR_14  13 alGdpdeAiallrrala...laPdd.aeawlllaq 43 
                 a  d+d A+++l++a +   +  d+ ae+w ++a+
  CDO70762.1 598 AEPDLDSARKILDKATKvnfKTVDElAEVWCEWAE 632
                 45689**********99544334442678888876 PP

  == domain 7  score: 12.0 bits;  conditional E-value: 0.00022
      TPR_14   2 eallalaeallalGdpdeAiallrralala 31 
                 e++ + ae + +++++deAi++l+ra a  
  CDO70762.1 625 EVWCEWAEMEIRQENYDEAIRILQRASA-I 653
                 67888999******************55.4 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.3
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 ++  ++++++ lG  + A a+++++l+l
  CDO70762.1 678 LWSFYVDLEESLGTVESAKAVYDKILDL 705
                 7888999*****************9985 PP

  == domain 9  score: 5.8 bits;  conditional E-value: 0.021
      TPR_14   7 laeallalGdpdeAiallrralala..Pddaeaw.llla 42 
                 +a++l+++  ++e+ ++++r  +l+  P + e+w ++la
  CDO70762.1 716 YASFLEENKYYEESFKVYERGTELFtyPVSFEIWnIYLA 754
                 89*******************997511544566656666 PP

  == domain 10  score: -0.4 bits;  conditional E-value: 2.1
      TPR_14  19 eAiallrralalaP 32 
                 + ++l+++al+++P
  CDO70762.1 767 RTRDLFEQALEKCP 780
                 56899*******98 PP

  == domain 11  score: 2.6 bits;  conditional E-value: 0.24
      TPR_14   4 llalaeallalGdpdeAiallrral 28 
                  l++a ++++ G  ++A+ +++ra 
  CDO70762.1 788 FLMYATFEEEHGLAKRAMSIYDRAT 812
                 589********************84 PP

  == domain 12  score: -1.2 bits;  conditional E-value: 3.8
      TPR_14  22 allrralalaPdd 34 
                  +++ral+  Pd 
  CDO70762.1 842 PIYERALEILPDK 854
                 68999*9999985 PP

  == domain 13  score: 2.7 bits;  conditional E-value: 0.21
      TPR_14   8 aeallalGdpdeAiallrralal 30 
                 a+ ++ lG+ d+A+a++  a + 
  CDO70762.1 864 AAMERKLGEIDRARAIYAHASQF 886
                 5566789**********998774 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.7   3.7e+03      12      31 ..     181     200 ..     180     201 .. 0.89
   2 ?    3.2   0.0     0.096   1.3e+02      24      52 ..     416     444 ..     408     447 .. 0.84
   3 !    9.8   0.1   0.00079       1.1       6      53 ..     601     652 ..     589     662 .. 0.63
   4 ?    0.4   0.0      0.68   9.4e+02      32      53 ..     683     704 ..     674     729 .. 0.66
   5 ?    0.2   0.0      0.79   1.1e+03      12      57 ..     770     817 ..     764     822 .. 0.84
   6 !    9.4   0.2    0.0011       1.5      11      49 ..     841     881 ..     833     885 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.7
      TPR_19  12 alleqalqedpknaearllL 31 
                 a +e+al   p +++++ll+
  CDO70762.1 181 ATFERALMWLPRMPRIWLLY 200
                 679**************986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.096
      TPR_19  24 naearllLAeallalgqldeAealLdalp 52 
                  ++++ +LA   ++ g++d A+ + ++ +
  CDO70762.1 416 AGRLWTGLATYWIKRGEFDRAKLTFERGL 444
                 5678889***************9988765 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00079
      TPR_19   6 dyaeAlalleqalqedpk....naearllLAeallalgqldeAealLdalpe 53 
                 d+++A ++l +a + + k     ae++   Ae  + + ++deA+++L+++ +
  CDO70762.1 601 DLDSARKILDKATKVNFKtvdeLAEVWCEWAEMEIRQENYDEAIRILQRASA 652
                 6666777777766554444422344444447777777777777777777654 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.68
      TPR_19  32 AeallalgqldeAealLdalpe 53 
                 +++  +lg ++ A+a+ d++++
  CDO70762.1 683 VDLEESLGTVESAKAVYDKILD 704
                 5666666777777777777665 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.79
      TPR_19  12 alleqalqedpk..naearllLAeallalgqldeAealLdalpeedpd 57 
                 +l+eqal++ p      + l +A    + g  + A+ + d++ ++ +d
  CDO70762.1 770 DLFEQALEKCPPkhCKPIFLMYATFEEEHGLAKRAMSIYDRATNAVQD 817
                 688999999665568899999999999999999999999999999998 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.0011
      TPR_19  11 lalleqalqedpk..naearllLAeallalgqldeAealLd 49 
                  +++e+al+  p+   ae  l+ A    +lg++d A+a+ +
  CDO70762.1 841 RPIYERALEILPDkqTAEMCLRFAAMERKLGEIDRARAIYA 881
                 579*******77766999999*****************976 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.57   7.8e+02      87     121 ..     216     249 ..     214     273 .. 0.83
   2 ?    2.4   0.0     0.094   1.3e+02      79     118 ..     426     465 ..     421     472 .. 0.89
   3 ?   -0.6   0.1      0.78   1.1e+03      88     135 ..     604     652 ..     598     679 .. 0.70
   4 !   23.4   3.0   3.8e-08   5.2e-05      55     190 ..     729     914 ..     692     999 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.57
         Suf  87 nnaRvlfekvvsklskekeakelykkfleyestfg 121
                 + aR +f++++++l +    + ++ ++l ++   g
  CDO70762.1 216 THARRTFDRALRTLPPSL-HSRIWVRYLLWAEAKG 249
                 789***************.99*****998877666 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.094
         Suf  79 yLislnddnnaRvlfekvvsklskekeakelykkfleyes 118
                 y i+  + ++a+ +fe+ ++++   ++  ++++ ++e+  
  CDO70762.1 426 YWIKRGEFDRAKLTFERGLASVLTIRDFTQIFDAYAEFSE 465
                 778889999************999888**********965 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.78
         Suf  88 naRvlfekvvsk.lskekeakelykkfleyestfgdlssilklekRmee 135
                 +aR +++k+ +  ++  +e+ e++  ++e e ++ + ++ + + +R ++
  CDO70762.1 604 SARKILDKATKVnFKTVDELAEVWCEWAEMEIRQENYDEAIRILQRASA 652
                 5566666555432555556888888888888888888887777777554 PP

  == domain 4  score: 23.4 bits;  conditional E-value: 3.8e-08
         Suf  55 AtkIFelGlKkFpedeefvlkYl...dyLisl..nddnnaRvlfekvvsklskekeakelykkfleyestfgdlssilklekRmeelfpedskleqfv. 147
                  +k++e+G  +F+    f + ++   ++  +    + +++R lfe++++k  +++  k+++  ++ +e ++g  +   ++ +R  +++++++k e+f+ 
  CDO70762.1 729 SFKVYERGTELFTYPVSFEIWNIylaKFVKRYggSKIERTRDLFEQALEKCPPKH-CKPIFLMYATFEEEHGLAKRAMSIYDRATNAVQDEDKFELFTi 826
                 599*******9999888866554224566554446889*****************.**********************************888776642 PP

         Suf 148 ......dRYklknldpikkrelksetkqeeekallqkkeeqaaslees.......................................k 190
                       + Y l    pi +r l++  ++++ ++ l+ ++ + +  e +                                       +
  CDO70762.1 827 yiakaaENYGLPATRPIYERALEILPDKQTAEMCLRFAAMERKLGEIDraraiyahasqfcdprvnpkfwqewnnfeietgsedtfrE 914
                 2222227788888888888888877666666666655554322222223455556666666666654444443333333333333330 PP

>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.5e+03      98     124 .]     418     444 ..     414     444 .. 0.89
   2 ?    3.9   0.0     0.035        49      82     117 ..     564     599 ..     529     612 .. 0.68
   3 !    7.0   0.0    0.0038       5.3      94     123 ..     621     650 ..     615     650 .. 0.91
   4 !    7.8   0.3    0.0022         3      67     123 ..     676     736 ..     673     737 .. 0.89
   5 ?    2.2   0.0      0.12   1.6e+02      78     123 ..     766     811 ..     746     812 .. 0.82
   6 ?   -1.4   0.0       1.5   2.1e+03      15      36 ..     816     837 ..     808     866 .. 0.72
   7 ?   -2.2   0.0       2.8   3.8e+03      95     122 ..     855     882 ..     829     883 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
                  HHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  98 lfYeewAellekkgrfkeAeevyelGi 124
                   +++  A++  k+g+f++A+  +e+G+
   CDO70762.1 418 RLWTGLATYWIKRGEFDRAKLTFERGL 444
                  578999*****************9996 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.035
                  HHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHH CS
  Mad3_BUB1_I  82 eifkflaskkiGtklalfYeewAellekkgrfkeAe 117
                  +  +++  ++   +l  +Y+++A+++e+ g   eAe
   CDO70762.1 564 QALATINPRRATANLHRIYINYAKFYEEGGTKGEAE 599
                  555555556666677777777777777777776665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0038
                  TTBHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  94 tklalfYeewAellekkgrfkeAeevyelG 123
                   +la+ + ewAe+  ++++++eA ++++++
   CDO70762.1 621 DELAEVWCEWAEMEIRQENYDEAIRILQRA 650
                  6899**********************9975 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0022
                  HHHHHHHHTTS......S-HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  67 lklwlkyadlv......eepreifkflaskkiGtklalfYeewAellekkgrfkeAeevyelG 123
                  lklw  y+dl       e+++ +++ +++ +i +  a++  ++A++le+++ ++e+ +vye+G
   CDO70762.1 676 LKLWSFYVDLEeslgtvESAKAVYDKILDLRIAN--AQIIVNYASFLEENKYYEESFKVYERG 736
                  88899998887777887999999***99999986..78999********************98 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.12
                  S-HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  78 eepreifkflaskkiGtklalfYeewAellekkgrfkeAeevyelG 123
                  e+ r++f++ ++k   +++  ++  +A++ e++g  k+A ++y+++
   CDO70762.1 766 ERTRDLFEQALEKCPPKHCKPIFLMYATFEEEHGLAKRAMSIYDRA 811
                  7889999999999999999999*********************875 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.5
                  ...-THHHHHHHHHHHHHH-TT CS
  Mad3_BUB1_I  15 egdDpLelwlryikwieesypq 36 
                  + +D++el+  yi    e+y  
   CDO70762.1 816 QDEDKFELFTIYIAKAAENYGL 837
                  45799*********99999976 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 2.8
                  TBHHHHHHHHHHHHHTT-HHHHHHHHHH CS
  Mad3_BUB1_I  95 klalfYeewAellekkgrfkeAeevyel 122
                  ++a++  ++A++  k g++++A+++y +
   CDO70762.1 855 QTAEMCLRFAAMERKLGEIDRARAIYAH 882
                  6677778899999999999999999976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         3   4.1e+03      53      73 ..     425     445 ..     413     447 .. 0.76
   2 ?   -2.5   0.1       4.8   6.6e+03      45      74 ..     579     608 ..     560     612 .. 0.59
   3 !   15.3   0.0   1.3e-05     0.018       2      32 ..     623     653 ..     622     657 .. 0.91
   4 ?    2.0   0.0      0.18   2.5e+02       3      28 ..     710     735 ..     684     741 .. 0.80
   5 !    7.8   0.1    0.0029         4      24      73 ..     842     885 ..     838     888 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3
      TPR_12  53 rlyr.algryeeAlelleeala 73 
                 + y+ ++g+++ A   +e+ la
  CDO70762.1 425 T-YWiKRGEFDRAKLTFERGLA 445
                 4.44388999999999999887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.8
      TPR_12  45 attlrnLgrlyralgryeeAlelleealai 74 
                  ++++n++  y++ g   eA+  l  a +i
  CDO70762.1 579 HRIYINYAKFYEEGGTKGEAEPDLDSARKI 608
                 456666666666666666666666655555 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.3e-05
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekalei 32 
                 +a ++ ++a+++ r+++ydeA+++l++a +i
  CDO70762.1 623 LAEVWCEWAEMEIRQENYDEAIRILQRASAI 653
                 6889989*********************886 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.18
      TPR_12   3 atalnnlaavlrrlgrydeAlellek 28 
                 a++ +n+a++l + + y+e+++ +e+
  CDO70762.1 710 AQIIVNYASFLEENKYYEESFKVYER 735
                 45566899999999999999998887 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0029
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                  ++e+alei      pd+ +ta+     + + r+lg+ + A++++ +a +
  CDO70762.1 842 PIYERALEIL-----PDK-QTAEMCLRFAAMERKLGEIDRARAIYAHASQ 885
                 6899999999.....888.8899999999999999999999999988865 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.5   2.1e+03      12      28 ..     428     444 ..     418     445 .. 0.78
   2 ?    1.9   0.2      0.23   3.2e+02      16      29 ..     601     614 ..     579     619 .. 0.55
   3 ?    4.7   0.0     0.031        43       1      31 [.     624     654 ..     624     657 .. 0.82
   4 ?    3.6   0.0      0.07        97       9      30 ..     684     705 ..     676     706 .. 0.81
   5 !    8.1   0.2    0.0024       3.3       1      30 [.     710     739 ..     710     740 .. 0.91
   6 ?    2.2   0.1      0.19   2.7e+02       1      27 [.     857     883 ..     857     886 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.5
                 HHTT-HHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekal 28 
                 +k g+++ Ak ++e+ l
  CDO70762.1 428 IKRGEFDRAKLTFERGL 444
                 789**********9865 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.23
                 -HHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekale 29 
                 d+++A + + ka++
  CDO70762.1 601 DLDSARKILDKATK 614
                 45555555555555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.031
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleld 31 
                 ae+++  +   + +++y+eA+  +++a  + 
  CDO70762.1 624 AEVWCEWAEMEIRQENYDEAIRILQRASAIP 654
                 56777777888899************98775 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.07
                 HHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekalel 30 
                 ++ ++lg  e+Ak++y k l+l
  CDO70762.1 684 DLEESLGTVESAKAVYDKILDL 705
                 667899************9987 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0024
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 a++ +n +s +++ + yee+ ++ye+ +el
  CDO70762.1 710 AQIIVNYASFLEENKYYEESFKVYERGTEL 739
                 577899*******************99886 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.19
                 CCHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyeka 27 
                 ae++++ +   +klg+++ A + y +a
  CDO70762.1 857 AEMCLRFAAMERKLGEIDRARAIYAHA 883
                 577888888889************888 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.044        60       3      28 ..     419     444 ..     417     445 .. 0.90
   2 !    8.1   0.0    0.0018       2.5       1      27 [.     624     650 ..     624     653 .. 0.92
   3 ?   -1.3   0.0       1.7   2.3e+03      22      32 ..     770     780 ..     764     780 .. 0.79
   4 ?    1.6   0.0      0.21   2.9e+02      24      33 ..     844     853 ..     843     854 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekAL 28 
                  + +l+    k g++d A   +e+ L
  CDO70762.1 419 LWTGLATYWIKRGEFDRAKLTFERGL 444
                 7999***************9999987 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekA 27 
                 a++++  + +  ++++ydeA+   ++A
  CDO70762.1 624 AEVWCEWAEMEIRQENYDEAIRILQRA 650
                 7899*****************999998 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.7
                 HHHHHHHHHST CS
       TPR_1  22 eyyekALelnP 32 
                 + +e+ALe +P
  CDO70762.1 770 DLFEQALEKCP 780
                 67999999877 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.21
                 HHHHHHHSTT CS
       TPR_1  24 yekALelnPn 33 
                 ye+ALe+ P+
  CDO70762.1 844 YERALEILPD 853
                 9******997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.8   1.2e+04      23      33 ..     104     114 ..     103     115 .. 0.83
   2 ?   -2.4   0.0       5.2   7.1e+03      20      29 ..     218     227 ..     216     230 .. 0.82
   3 !    6.2   0.0    0.0092        13       3      29 ..     419     445 ..     417     446 .. 0.91
   4 ?   -2.9   0.0       7.6     1e+04      16      30 ..     601     615 ..     601     616 .. 0.83
   5 !   13.2   0.1   5.5e-05     0.076       1      27 [.     624     650 ..     624     653 .. 0.94
   6 ?    2.3   0.1      0.17   2.3e+02       6      30 ..     715     739 ..     710     741 .. 0.83
   7 ?    0.6   0.0      0.58     8e+02      22      32 ..     770     780 ..     769     781 .. 0.88
   8 ?   -0.1   0.0      0.97   1.3e+03      24      33 ..     844     853 ..     842     854 .. 0.91
   9 ?   -0.4   0.1       1.2   1.6e+03      11      27 ..     867     883 ..     858     887 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.8
       TPR_2  23 afekAleldPn 33 
                 ++e+Al   P+
  CDO70762.1 104 LYEAALTQFPT 114
                 69999999987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.2
       TPR_2  20 AleafekAle 29 
                 A++ f++Al+
  CDO70762.1 218 ARRTFDRALR 227
                 9999****98 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0092
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 ++  l+  ++k+g++++A+  fe+ l+
  CDO70762.1 419 LWTGLATYWIKRGEFDRAKLTFERGLA 445
                 7999*******************9885 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 7.6
       TPR_2  16 dyeeAleafekAlel 30 
                 d++ A++ ++kA + 
  CDO70762.1 601 DLDSARKILDKATKV 615
                 6799*******9875 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 5.5e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 ae+++++++  +++ +y+eA++ +++A
  CDO70762.1 624 AEVWCEWAEMEIRQENYDEAIRILQRA 650
                 79***********************99 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.17
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 n +  +++++ yee  + +e+  el
  CDO70762.1 715 NYASFLEENKYYEESFKVYERGTEL 739
                 56677889999**********9887 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.58
       TPR_2  22 eafekAleldP 32 
                 ++fe+Ale +P
  CDO70762.1 770 DLFEQALEKCP 780
                 78******998 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 0.97
       TPR_2  24 fekAleldPn 33 
                 +e+Ale+ P+
  CDO70762.1 844 YERALEILPD 853
                 9******997 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.2
       TPR_2  11 yyklgdyeeAleafekA 27 
                  +klg+ ++A++ +  A
  CDO70762.1 867 ERKLGEIDRARAIYAHA 883
                 579********999877 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00094       1.3      90     114 ..     104     128 ..      85     162 .. 0.85
   2 ?   -1.6   0.0      0.82   1.1e+03      87     137 ..     179     231 ..     170     238 .. 0.76
   3 ?   -0.4   0.2      0.37     5e+02     112     138 ..     546     572 ..     462     598 .. 0.66
   4 ?   -0.6   1.0      0.41   5.6e+02     143     143 ..     577     577 ..     513     725 .. 0.55
   5 ?    5.3   0.0    0.0066         9      86     134 ..     731     778 ..     697     787 .. 0.81
   6 ?    4.5   0.4     0.012        16      41     135 ..     795     926 ..     782     950 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00094
      NRDE-2  90 eWeellkenpnsvkLWreyldfrqs 114
                  +e++l + p+s+kLW+ yl+ r+s
  CDO70762.1 104 LYEAALTQFPTSFKLWKSYLQTRMS 128
                 5789999***************998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.82
      NRDE-2  87 lakeWeellkenpnsvkLWreyldfrqsnfasf..svekvkelyekclrtlsa 137
                 l + +e++l+  p   ++W  yl++  + f     s ++ ++++ ++lrtl  
  CDO70762.1 179 LIATFERALMWLPRMPRIWLLYLSIFNHPFCPPqvSHTHARRTFDRALRTLPP 231
                 566778888888999999*****999999975511556778999999999865 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.37
      NRDE-2 112 rqsnfasfsvekvkelyekclrtlsak 138
                  + ++as++ ++v e+y+++l+t++ +
  CDO70762.1 546 MLIQIASLTTKQVAETYAQALATINPR 572
                 233445556666666666666666655 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.41
      NRDE-2 143 k 143
                 +
  CDO70762.1 577 N 577
                 1 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.0066
      NRDE-2  86 klakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrt 134
                 k+ ++ +el +++p s+++W+ yl    ++    ++e++++l+e++l++
  CDO70762.1 731 KVYERGTEL-FTYPVSFEIWNIYLAKFVKRYGGSKIERTRDLFEQALEK 778
                 444444443.46799********************************97 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.012
      NRDE-2  41 serkalaeiklsilekAleknksnpdserLllelLklgseiwdseklakeWeellk......................................enpns 101
                 +e++ la++ +si+++A ++ ++ +d+ +L   ++  ++e +   +++  +e++l+                                      +   +
  CDO70762.1 795 EEEHGLAKRAMSIYDRATNAVQD-EDKFELFTIYIAKAAENYGLPATRPIYERALEilpdkqtaemclrfaamerklgeidraraiyahasqfcDPRVN 892
                 67788999999999999999955.577777777777777766666555555555555555555555555555555555555566666666556544466 PP

      NRDE-2 102 vkLWreyldfrqsnfasfsvekvkelyekclrtl 135
                  k W+e+ +f++++ ++ ++ +++++ +++ +++
  CDO70762.1 893 PKFWQEWNNFEIETGSEDTFREMLRIKRSVQAQF 926
                 6777777777777777777777766655555544 PP

>> DUF627  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.15       2     102 ..     631     735 ..     630     739 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      DUF627   2 AkdllargnhikALeiiedlisrhgedeksallhrl..qGtifvklakktedpdvkfayllasvecfseavels....rfyArsLfelasqlgsklyYk 94 
                 A+  +++ n+ +A++i++ +++  ++ ++  + h l  q+ +f  l  k+ +  v+    l++ve+++             A+ +++ as l+ ++yY+
  CDO70762.1 631 AEMEIRQENYDEAIRILQRASAIPKNTKVNYFDHTLpvQARLFKSL--KLWSFYVDLEESLGTVESAKAVYDKIldlrIANAQIIVNYASFLEENKYYE 727
                 667789****************************998899999988..5667777777789999998764432223548999***************** PP

      DUF627  95 kavkkakr 102
                 ++ k  +r
  CDO70762.1 728 ESFKVYER 735
                 *9987666 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       2.7   3.7e+03      40      62 ..     480     503 ..     458     505 .. 0.55
   2 ?    0.0   0.0      0.65     9e+02      25      39 ..     638     652 ..     636     660 .. 0.68
   3 ?    8.2   0.0    0.0019       2.6       3      35 ..     709     741 ..     707     751 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
         MIT  40 e.kneerrellrekieeYleRaee 62 
                 e ++ee+ +  ++++ee ++  ee
  CDO70762.1 480 EdEDEEDVKETEKELEEKMKEFEE 503
                 233445566666666666666665 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.65
         MIT  25 elYkealelLlqalk 39 
                 e+Y ea+++L+ a +
  CDO70762.1 638 ENYDEAIRILQRASA 652
                 567777777777765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0019
         MIT   3 kAlelvkkAveeDnagnyeeAlelYkealelLl 35 
                 +A  +v+ A  +++++ yee ++ Y+ + el++
  CDO70762.1 709 NAQIIVNYASFLEENKYYEESFKVYERGTELFT 741
                 567789999999*******************97 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.8   6.6e+03      14      26 ..     175     187 ..     174     191 .. 0.81
   2 ?    3.6   0.0     0.057        78       4      29 ..     422     445 ..     419     458 .. 0.85
   3 ?   -2.8   0.1       6.5   8.9e+03      16      27 ..     556     567 ..     555     570 .. 0.78
   4 ?    5.7   0.0     0.012        17      11      27 ..     636     652 ..     621     658 .. 0.78
   5 ?   -1.8   0.0       3.1   4.3e+03      21      33 ..     843     855 ..     842     858 .. 0.75
   6 ?   -3.0   0.0       7.6   1.1e+04      10      24 ..     868     882 ..     868     884 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.8
       TPR_7  14 dyeeAielyeqsL 26 
                 +++ +i  +e++L
  CDO70762.1 175 EWRLLIATFERAL 187
                 78899******66 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.057
       TPR_7   4 nLarlysrlGdyeeAielyeqsLalt 29 
                  La  + ++G++++A   +e+  +l+
  CDO70762.1 422 GLATYWIKRGEFDRAKLTFER--GLA 445
                 589999**************9..766 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.5
       TPR_7  16 eeAielyeqsLa 27 
                 ++ +e y q+La
  CDO70762.1 556 KQVAETYAQALA 567
                 678999999776 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.012
       TPR_7  11 rlGdyeeAielyeqsLa 27 
                 r+ +y+eAi++++++ a
  CDO70762.1 636 RQENYDEAIRILQRASA 652
                 599***********655 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 3.1
       TPR_7  21 lyeqsLaltkdpe 33 
                 +ye++L++  d +
  CDO70762.1 843 IYERALEILPDKQ 855
                 6999998877765 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 7.6
       TPR_7  10 srlGdyeeAielyeq 24 
                 ++lG+ ++A  +y  
  CDO70762.1 868 RKLGEIDRARAIYAH 882
                 589999**9999976 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21   2.9e+02       1      16 [.     104     119 ..     104     124 .. 0.92
   2 ?    2.6   0.0      0.16   2.2e+02      15      33 ..     419     437 ..     409     437 .. 0.91
   3 ?   -2.4   0.0       6.1   8.5e+03       6      14 ..     517     525 ..     516     530 .. 0.81
   4 ?   -0.3   0.0       1.3   1.8e+03      15      32 ..     581     598 ..     575     605 .. 0.80
   5 ?   -1.8   0.0         4   5.6e+03      13      33 ..     624     644 ..     622     645 .. 0.76
   6 ?   -1.0   0.1       2.2   3.1e+03       2      26 ..     699     723 ..     698     728 .. 0.82
   7 ?    0.6   0.0       0.7   9.7e+02       1      22 [.     771     794 ..     771     805 .. 0.65
   8 ?   -0.1   0.0       1.2   1.6e+03       2      12 ..     844     854 ..     843     878 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
      TPR_17   1 lylkaleldPnnaday 16 
                 ly+ al + P++++++
  CDO70762.1 104 LYEAALTQFPTSFKLW 119
                 7***********9998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.16
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 +++ LA+++ k+G++++A+
  CDO70762.1 419 LWTGLATYWIKRGEFDRAK 437
                 7999*************96 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.1
      TPR_17   6 leldPnnad 14 
                 l+++Pn++ 
  CDO70762.1 517 LRRNPNDVQ 525
                 789***986 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.3
      TPR_17  15 aynnLAelllknGdlmtA 32 
                  y n+A+++++ G +++A
  CDO70762.1 581 IYINYAKFYEEGGTKGEA 598
                 799******976655555 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 4
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a+++++ Ae   ++ ++++A+
  CDO70762.1 624 AEVWCEWAEMEIRQENYDEAI 644
                 667777777777999999997 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 2.2
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                 y k l+l   na    n+A +l++n
  CDO70762.1 699 YDKILDLRIANAQIIVNYASFLEEN 723
                 667777777799999******9987 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.7
      TPR_17   1 lylkaleld.Pnn.adaynnLAel 22 
                 l+++ale++ P++  + + ++A++
  CDO70762.1 771 LFEQALEKCpPKHcKPIFLMYATF 794
                 79*******444455555555555 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 1.2
      TPR_17   2 ylkaleldPnn 12 
                 y++ale+ P+ 
  CDO70762.1 844 YERALEILPDK 854
                 99999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1130  (0.0630264); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 6431.44
//
Query:       CDO70763.1  [L=247]
Description: hypothetical protein BN946_scf184798.g78, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-25   87.1  15.1    2.3e-09   36.7   2.7    5.0  5  PPTA      Protein prenyltransferase alpha subunit repeat
  ------ inclusion threshold ------
      0.029   13.9   0.0       0.04   13.4   0.0    1.2  1  Vps8      Golgi CORVET complex core vacuolar protein 8


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.7e-08   0.00015      10      26 ..      34      50 ..      32      51 .. 0.90
   2 !   36.7   2.7   2.5e-13   2.3e-09       2      28 .]      71      97 ..      70      97 .. 0.96
   3 !    6.1   0.0    0.0011       9.5       1      16 [.     118     133 ..     118     134 .. 0.92
   4 !   29.7   0.3     4e-11   3.6e-07       2      27 ..     133     158 ..     133     159 .. 0.94
   5 ?   -2.0   0.1      0.39   3.5e+03       2      13 ..     218     229 ..     217     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.7e-08
                HH-TT-CHHHHHHHHHH CS
        PPTA 10 ekdpkNYsaWnyRrwll 26
                e +p  Y++WnyRr +l
  CDO70763.1 34 EVNPEFYTIWNYRRNIL 50
                679************99 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 2.5e-13
                HHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA  2 LeltekliekdpkNYsaWnyRrwllek 28
                L lt+ l++++pk Y++Wn+R+w+l++
  CDO70763.1 71 LSLTTTLLKQHPKVYWIWNHRYWCLRQ 97
                89***********************86 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHH-TT-C CS
        PPTA   1 ELeltekliekdpkNY 16 
                 EL  +e +++ dp+N+
  CDO70763.1 118 ELFVVERMLDADPRNF 133
                 78899**********8 PP

  == domain 4  score: 29.7 bits;  conditional E-value: 4e-11
                 HHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   2 LeltekliekdpkNYsaWnyRrwlle 27 
                 +el+++++++dp ++s+W y+rwl+ 
  CDO70763.1 133 FELVKNAMYTDPNDQSVWIYHRWLIG 158
                 69**********************95 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.39
                 HHHHHHHHHH-T CS
        PPTA   2 Leltekliekdp 13 
                 Lel +kl e dp
  CDO70763.1 218 LELLNKLQEVDP 229
                 899999999998 PP

>> Vps8  Golgi CORVET complex core vacuolar protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.4e-06      0.04      97     153 ..      25      81 ..       4     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-06
        Vps8  97 eeeekeeeeeeeeeaykvfeYlsyiLtGraYPsgeeleeeeaskakseiyslLfsgk 153
                  +e ++ + e + e y++++Y  +iLtG ++P+ ++ + +e+ +   ++ + L++++
  CDO70763.1  25 LKEYQSLTAEVNPEFYTIWNYRRNILTGGVFPKSSPAQTNEILSNDLSLTTTLLKQH 81 
                 456677788889999*****************9999999999999999999988443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1593.30
//
Query:       CDO70764.1  [L=1383]
Description: hypothetical protein BN946_scf184798.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   10.8   0.0       0.31   10.0   0.0    1.4  1  Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping prot


Domain annotation for each model (and alignments):
>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.7e-05      0.31      31     133 ..     478     576 ..     453     648 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 1.7e-05
    Ge1_WD40  31 gkylayaikvkntgeglvrvvnketeeraLlk..glkgevldlafahvsskillavdekgslfvykveeve.skllvslllkveapietvvsesdrviW 126
                  +++aya+       g vrv++++  +r+Ll+  gl  + + ++   v+ ++l++v + g ++v+++  v  +++  +++l v    ++  +  + v W
  CDO70764.1 478 TQWVAYAMTK-----GRVRVISRSSGDRTLLQlpGLFHQTTSVSDMSVHGNRLAGVTSDGGFVVWELPPVItDDVPGEIMLCVFP--QNDAEPLHAVKW 569
                 3588998865.....55*************97668888888888888999*****************876538999999999976..556677889999 PP

    Ge1_WD40 127 CPyipee 133
                  P  p+ 
  CDO70764.1 570 HPQQPDL 576
                 9866654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 8169.95
//
Query:       CDO70765.1  [L=329]
Description: hypothetical protein BN946_scf184798.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-46  155.5   0.0    1.3e-45  155.0   0.0    1.2  1  Dioxygenase_C    Dioxygenase
    9.1e-29   99.1   0.0    1.8e-28   98.2   0.0    1.5  1  Dioxygenase_N    Catechol dioxygenase N terminus
     0.0094   16.2   0.0      0.074   13.3   0.0    2.4  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.097   12.2   0.0       0.15   11.6   0.0    1.2  1  ACOX             Acyl-CoA oxidase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   2.9e-49   1.3e-45       2     169 ..     121     284 ..     120     305 .. 0.94

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 2.9e-49
                    --S--EET--EEESEEE---S--TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SSTTTTEEEEE--TTSEEEEEEE----EE CS
  Dioxygenase_C   2 egPlyveeapededlarledkgeeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheapelnlrgriltdeeGryrirtikPapYp 97 
                     gP+++e++p  e+  + ++  + +ge ++++Grvl ++G p+++a++e W+++ +G+Y+ + ++  ++++  rgr+ +d++Gr+  r++ P +Yp
     CDO70765.1 121 LGPFFTEDSPDLENGDSIAS--DGKGEYMYVEGRVLSTDGTPIPNAKIETWETDGNGFYDTQYSN--REKPECRGRLHADKDGRFGYRAVVPVAYP 212
                    69******999998888877..89***************************************99..677789*********************** PP

                    --TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEETT-TTTTS-TT----TTTEE--EEE-SHS- CS
  Dioxygenase_C  98 ipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfegdkyladdivsaakeeLiaeleesedeee 169
                    ip dGp+g+ll  +grh++RP+H+H++v apg++klvT +y egd++l++d v+++k++L+++lee +deee
     CDO70765.1 213 IPGDGPVGQLLLGMGRHNMRPNHLHLMVEAPGYTKLVTAFYPEGDEWLESDAVFGVKKSLVVKLEEVNDEEE 284
                    ********************************************************************9965 PP

>> Dioxygenase_N  Catechol dioxygenase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0     4e-32   1.8e-28       1      72 [.      42     113 ..      42     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 4e-32
                    -HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.....TT-HHHHHHHTTHHHHHHHHHHHHHH CS
  Dioxygenase_N   1 dpRlkeiverlvrhlhdfirevdlteeEwwaavdfLtrvGqisddkrqEfiLlsdvLGlehlvdaindakea 72 
                    ++R + ++++l++hlh+f+re+ lt++Ew++a++fLt+vG+++++ rqEfiLlsdvLG+++lvdain++  +
     CDO70765.1  42 NERRRFLAKNLISHLHQFVRETYLTTQEWEEAIQFLTAVGKTCTPLRQEFILLSDVLGVSALVDAINNPPVQ 113
                    79*****************************************************************98665 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.6e-05     0.074       2      28 ..     149     180 ..     148     213 .. 0.68
   2 ?   -0.5   0.0      0.35   1.6e+03      44      62 ..     230     248 ..     228     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtg.....t 28 
                      ++GrV +++g+pi++a+++   +d++     +
       CDO70765.1 149 VEGRVLSTDGTPIPNAKIETWETDGNgfydtQ 180
                      79****************98776655333330 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.35
  CarboxypepD_reg  44 glppgtysvtvsapGyata 62 
                      ++ p    + v+apGy   
       CDO70765.1 230 NMRPNHLHLMVEAPGYTKL 248
                      567888899*******876 PP

>> ACOX  Acyl-CoA oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.4e-05      0.15      83     133 ..      47     100 ..      44     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHTHHHHHHTTSS-HH...HHHHHHHHHHHHHHHHHGCHHHHHHTT-- CS
        ACOX  83 yalstiekhlgdflesgylspd...qldllreailellkelrpnavaLvDafdf 133
                 ++++++ +hl +f+++ yl+ +   ++ +   a+ + ++ lr++ + L D++++
  CDO70765.1  47 FLAKNLISHLHQFVRETYLTTQeweEAIQFLTAVGKTCTPLRQEFILLSDVLGV 100
                 7788999************999666666677999****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2241.91
//
Query:       CDO70766.1  [L=142]
Description: hypothetical protein BN946_scf184798.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-18   64.6  21.9    3.9e-17   62.7  21.9    1.9  1  Got1      Got1/Sft2-like family


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7  21.9   2.2e-21   3.9e-17      12     112 ..      52     140 ..      27     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 2.2e-21
        Got1  12 lpllflkprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsyiPggrsalkk 110
                 ++ l+      ++++ lG+++++ast+fLiG       mf++ r+iativ+l+s+ l+++ a+v++s +l+++fvi+++la++wy+lsyiP++r+a+ +
  CDO70766.1  52 VLSLLG-----SIFLFLGSLASFASTGFLIG-------MFKPVRVIATIVFLGSIGLIFVGAFVIRSDILCIIFVIIEYLAYTWYTLSYIPYARTAVLR 138
                 233333.....68999999999999999999.......89********************************************************988 PP

        Got1 111 vl 112
                 v+
  CDO70766.1 139 VF 140
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 951.36
//
Query:       CDO70767.1  [L=280]
Description: hypothetical protein BN946_scf184798.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-20   72.3   0.0    7.7e-20   71.2   0.0    1.6  2  HAGH_C         Hydroxyacylglutathione hydrolase C-terminus
    4.3e-06   26.9   5.4    0.00017   21.7   5.4    2.2  1  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
       0.02   14.4   1.2        0.1   12.1   1.2    2.1  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.5   1.5e+04      57      73 ..      65      82 ..      60      84 .. 0.69
   2 !   71.2   0.0   1.3e-23   7.7e-20       1      80 []     200     278 ..     200     278 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.5
      HAGH_C 57 pevqkavgee.vevfaaL 73
                p+v++a+++e v++ aaL
  CDO70767.1 65 PKVKAAAQKEgVQIVAAL 82
                677777775557777666 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 1.3e-23
      HAGH_C   1 EYtlsNlkFalsvepdnealkkrlkevkelrakgeptvpstladEkktNpFLRldepevqkavg..eevevfaaLRelKdnF 80 
                 EYt+ Nl+Fa++v+p+n+al++++k +k+       t  +t++dEk++NpF+Rl+++ +qk +g  ++++v++aLR lK+nF
  CDO70767.1 200 EYTKGNLAFAKHVDPENPALARLEKLLKDG---VIYTQRTTIGDEKEWNPFMRLESAPIQKVTGggDSASVMSALRMLKNNF 278
                 9***********************999998...68999*************************98555*************9 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   5.4   2.8e-08   0.00017      37     197 .]      70     199 ..      51     199 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.8e-08
                  HHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCC CS
  Lactamase_B  37 alglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkpdvdeeeldgnaggrralyvtggpghghg 134
                  a+ +++ ++ a + TH+H+DH Gg++  +   d+p++  ++  pal++  a                     d++e    +g  ++  +t++++  ++
   CDO70767.1  70 AAQKEGVQIVAALTTHHHFDHSGGNEAEA-FPDAPIYGGSHQIPALTTQVA---------------------DKDEF-KVGGINVRCLATPCHTRDSI 144
                  56788999*****************9755.468999999999999999999.....................33333.33444445567788888888 PP

                  EEEEEE.TTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.SS CS
  Lactamase_B 135 hgvvey.gggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.gH 197
                  ++ v++  + + +ftGD+l+++  gr+ +          ++ ++  ++l+ l +l+  ++v+ gH
   CDO70767.1 145 CYYVTDkSDTGAVFTGDTLFIAGCGRFFE----------GSGAEMHAALTYLGTLPSQTVVYdGH 199
                  888888688899*************9999..........44444444666666677777777776 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.2   1.7e-05       0.1      24     108 ..      71     134 ..      47     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
                    SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTEEEEEE CS
  Lactamase_B_2  24 lrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelgdggleitat 108
                    + +e  +i a l th H+DH  g     ++   ++p+y+  + +  l+++                ++ +++f++g+  +++++ 
     CDO70767.1  71 AQKEGVQIVAALTTHHHFDHSGG-NEAEAFP--DAPIYGGSHQIPALTTQ----------------VADKDEFKVGG--INVRCL 134
                    4556679999***********66.6666653..48999666666666666................33445566653..333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2001.89
//
Query:       CDO70768.1  [L=288]
Description: hypothetical protein BN946_scf184798.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.5   0.3      0.035   13.9   0.3    1.9  1  TMEM51     Transmembrane protein 51
      0.096   11.4   0.1       0.14   10.9   0.1    1.2  1  Herpes_gE  Alphaherpesvirus glycoprotein E
       0.14   13.1   0.0       0.28   12.1   0.0    1.7  1  EphA2_TM   Ephrin type-A receptor 2 transmembrane domain


Domain annotation for each model (and alignments):
>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   5.9e-06     0.035      27      98 ..      99     176 ..      87     282 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
      TMEM51  27 vvPgesea.....dkpkasanssskpdkdsgkeekksktss.vAyV.LvGaGvalLlLsicLgirdkkrarqeeeelar 98 
                 +vP+++++      +p +s +s +++ +++g++   sk s   A+V  v  G+alLlL++  ++ + +r+r+++++ ++
  CDO70768.1  99 IVPASGHStvtviVSPVPSISSGQHSANNGGTSGA-SKESHaGAIVgGVIGGLALLLLALVAAVINCRRRRASRTAPSA 176
                 56666665333332333333333333344444444.4433303333224459*************99999988776544 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.3e-05      0.14     331     379 ..     125     172 ..      94     183 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.3e-05
                 XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 331 skeiappnngt..sraalllaavliaalllvllglsalvcltkrrrrkkrr 379
                 +++++  ++++    +a+ ++ + ++alll++l   + +++++rrrr+ r 
  CDO70768.1 125 ANNGGTSGASKesHAGAIVGGVIGGLALLLLAL---VAAVINCRRRRASRT 172
                 344444444431034455555555555555443...446678888888776 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.7e-05      0.28       1      36 [.     142     177 ..     142     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl 36 
                 i++++++gl ll+++++ +++ +rrr+ +r++ s +
  CDO70768.1 142 IVGGVIGGLALLLLALVAAVINCRRRRASRTAPSAE 177
                 78999******9999999999999999988877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1975.18
//
Query:       CDO70769.1  [L=98]
Description: hypothetical protein BN946_scf184798.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 761.63
//
Query:       CDO70770.1  [L=295]
Description: hypothetical protein BN946_scf184798.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.078   12.8   0.1       0.19   11.5   0.0    1.7  2  TMEM51    Transmembrane protein 51
        1.1   10.0   3.6        8.9    7.1   0.0    2.9  3  TSP9      Thylakoid soluble phosphoprotein TSP9
        3.1    6.8   9.8        4.9    6.1   9.8    1.2  1  FAM199X   Protein family FAM199X
        3.8    8.0   7.2        1.7    9.1   0.1    2.7  3  IATP      Mitochondrial ATPase inhibitor, IATP


Domain annotation for each model (and alignments):
>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.71   3.2e+03      75     109 ..      44      78 ..      41      92 .. 0.55
   2 ?   11.5   0.0   4.2e-05      0.19      24      93 ..      93     163 ..      85     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.71
      TMEM51  75 LlLsicLgirdkkrarqeeeelaraqeslqeeeee 109
                 Ll+s + +i d++ ++ + e  +++qe+ ++++++
  CDO70770.1  44 LLVSTTYNISDHQLNSIADESRTTTQETWSASTSS 78 
                 66666666666666665555544444444433333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.2e-05
      TMEM51  24 vWsvvPgeseadkpkasanssskpdkdsgkeekksktssvAyVLvGaGvalLl.LsicLgirdkkrarqee 93 
                 v+s+v + +++++p +sa+ s++++ +s++ ++++ + ++A  L G  v+l++ L+  + +r + rar++ 
  CDO70770.1  93 VFSLVASATNTTEPVSSAGVSTTSQGNSSGGSRRNNADAIAGGLLGGLVFLIIvLTALVILRGRLRARRTA 163
                 8899*999999**********9999999999999***********97777665144445567777777553 PP

>> TSP9  Thylakoid soluble phosphoprotein TSP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   8.2e+03      37      57 ..      58      78 ..      54      91 .. 0.58
   2 ?    2.2   0.8     0.063   2.8e+02      44      78 ..     108     140 ..      99     143 .. 0.52
   3 ?    7.1   0.0     0.002       8.9      29      46 ..     237     260 ..     231     293 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
        TSP9 37 kKVdekegsggrttvrggkts 57
                + + +++ +++++t +++++s
  CDO70770.1 58 NSIADESRTTTQETWSASTSS 78
                555555555555555554444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.063
        TSP9  44 gsggrttvrggktsaavk.vapkkkeeGgfgGf.ggL 78 
                 +s+g +t+++g++s + +   +++      gG+ ggL
  CDO70770.1 108 SSAGVSTTSQGNSSGGSRrNNADA----IAGGLlGGL 140
                 445666666555555553033333....344554665 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.002
        TSP9  29 llETdPlLkKVdekegs......g 46 
                 ++ TdP+L+K  e++g+       
  CDO70770.1 237 VYPTDPVLQKAREAAGTwelyrrR 260
                 578************993332220 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   9.8    0.0011       4.9     193     244 ..      65     119 ..      43     134 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0011
     FAM199X 193 asstreswkrssyss.astsgvsaasssnasmvssassstasvgssa..ansaan 244
                  ++t+e+w  s+ s   st+ vs a ss  s+v+sa+ +t  v+s+   ++s  n
  CDO70770.1  65 RTTTQETWSASTSSIdESTTIVSRAPSSVFSLVASATNTTEPVSSAGvsTTSQGN 119
                 37899****99887527999****************9999888776421233333 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6     0.054   2.4e+02      14      45 ..      89     120 ..      77     133 .. 0.64
   2 ?    9.1   0.1   0.00038       1.7       7      41 ..     154     187 ..     149     195 .. 0.82
   3 ?   -2.6   0.1       1.7   7.5e+03      84      87 ..     272     275 ..     246     290 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.054
        IATP  14 rpvsaasfsvaarrmgEgdsGapkgtGggGsi 45 
                 +p s  s+   a++ +E  s a+ +t ++G+ 
  CDO70770.1  89 APSSVFSLVASATNTTEPVSSAGVSTTSQGNS 120
                 44455555566667777778888777777763 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00038
        IATP   7 aktltasrpvsaasfsvaarrmgEgdsGapkgtGg 41 
                 + +l+a+r   +a+f+ +arr g+ ++Gap ++Gg
  CDO70770.1 154 RGRLRARRTAPSAQFMHIARR-GDAGAGAPSKGGG 187
                 566778888888999997765.88*********98 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.7
        IATP  84 eHle 87 
                  H++
  CDO70770.1 272 LHED 275
                 2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2044.05
//
Query:       CDO70771.1  [L=856]
Description: hypothetical protein BN946_scf184798.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-72  243.1   0.0    9.2e-72  241.8   0.0    1.7  2  Piwi      Piwi domain
    5.9e-16   57.9   0.1    1.4e-15   56.7   0.1    1.6  1  ArgoL1    Argonaute linker 1 domain
      7e-10   39.7   0.0    1.6e-09   38.5   0.0    1.6  1  ArgoN     N-terminal domain of argonaute
    7.6e-06   26.1   0.1    2.5e-05   24.4   0.1    1.9  1  ArgoMid   Mid domain of argonaute
      8e-05   22.5   0.0    0.00019   21.2   0.0    1.6  1  PAZ       PAZ domain
    0.00044   20.5   0.0     0.0018   18.6   0.0    2.2  1  ArgoL2    Argonaute linker 2 domain


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       1.2   3.7e+03     273     289 ..       6      22 ..       5      23 .. 0.93
   2 !  241.8   0.0   3.1e-75   9.2e-72       1     297 [.     514     809 ..     514     835 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
                 GGTTTTSS-SS-HHHHH CS
        Piwi 273 myqrstrsvsiPapvyy 289
                 +y +s++ v++P+ +yy
  CDO70771.1   6 VYTNSYEIVRLPTAIYY 22 
                 799*************9 PP

  == domain 2  score: 241.8 bits;  conditional E-value: 3.1e-75
                 EEEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS.-EEESSSTTSSE......EEEEEEEEEECCCSCCCE CS
        Piwi   1 lilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgkn.vliveikleldv..sptliiGidishgtagtvdnps 96 
                 li+vilp++  d    +k   + ++++++qc++  ++++   ++q+++nvllkin+ lGg+n vl  ++ +   +  +p +i+G+d+ h+  g +++ps
  CDO70771.1 514 LIIVILPNNAADLRRRVKHWGDIKMKVPTQCVRGGKWQRA--SDQYCNNVLLKINARLGGTNsVLESDAAKF--LqnQPCMIVGADVGHPGPGSANRPS 608
                 69***********************************999..79*****************95444444443..346********************** PP

                 EEEEEEEEETSSEEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHTTTT-T.....TSEEEEEESS....S..S-HHHHHHHHHHHHH..HHHHCTTTE CS
        Piwi  97 vaavvasldkensrylaevstqassqelleklkeiikellrefkksskkkk.....periivyRdGvseGqfkqvlnsEvkelkealk..klkeqyqpk 188
                 v ++vas+d   s++++  ++q ++qe++e+l+e++ ++lr+++k++++       p+ ii+yRdGvseG+f qv + E++ ++ a+   ++ +   pk
  CDO70771.1 609 VTGLVASVDAAVSKLTSYANVQRPRQEIIEDLEEMMVNALRDYRKFQSTATpnpppPRYIIFYRDGVSEGEFAQVAAREIPLIRSAFAksNIPPHLTPK 707
                 **********************************************9987622222578****************************9556778999** PP

                 EEEEEEECSCS--EEESESTCCCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES..S-CCHHHHHHHHHCTGGTTTTSS-SS-HHH CS
        Piwi 189 ltvivvqkrhhtrfFasdkaeksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdeaklsadelqsltyklchmyqrstrsvsiPapv 287
                 l++ivv kr         +a+ s n p G +vd++it+p + dfyl shag+ gt++P +y +l +e +l++ + q lt++lch+y+++trsvsiPapv
  CDO70771.1 708 LLFIVVGKRP-------AQADSSGNCPAGLLVDQHITNPNYPDFYLQSHAGILGTSRPGHYVILENESGLNPLQVQILTFHLCHTYASATRSVSIPAPV 799
                 ********95.......4556679*************************************************************************** PP

                 HHHHHHHHHH CS
        Piwi 288 yyAhklAkrv 297
                 y A   A rv
  CDO70771.1 800 YFAYSDADRV 809
                 **98877776 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.1   4.5e-19   1.4e-15       4      51 ..     178     222 ..     177     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 4.5e-19
      ArgoL1   4 rsFfsppskqrvdLggggleawrGfyqSvRptqggLllNvDvsntaFy 51 
                 rsFf     +++dL   g+ awrG++qSvRp+ g+L++NvDvs++a y
  CDO70771.1 178 RSFFIAH--NSRDL-RRGISAWRGYFQSVRPVLGKLIINVDVSHAAVY 222
                 9****88..89***.66*****************************99 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   5.2e-13   1.6e-09       3     116 ..       4     121 ..       2     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 5.2e-13
       ArgoN   3 iklraNyFkvtslpdktlyhYd...................veit.kka.krvglrriiellleeykkselagkkpayDgrknlysakkLpkefedlpa 80 
                  ++++N +++  lp+   yhYd                    ei+ + + kr +  +ii++l+   +++ + + +++yDgrknl+s++ +       p 
  CDO70771.1   4 LEVYTNSYEIVRLPTAIYYHYDgprqvyldrtpspvlltssTEIKqELSiKRRN-YEIIDRLQL--DNAAIFNPRAIYDGRKNLFSTRDI-------P- 91 
                 579*********************999998888886554432333544445555.77*****74..345666779***************.......7. PP

       ArgoN  81 aeesakkepsekrrrksrtfkvtikfaksinlqsLl 116
                  ++s ++        + ++  v ik +  i++  ++
  CDO70771.1  92 -SGSYTVAL-----GRTKSVDVLIKRVSVISPGRVQ 121
                 .33333222.....2344788888888767776665 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   8.4e-09   2.5e-05       2      51 ..     418     463 ..     417     491 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.4e-09
     ArgoMid   2 prnGsWdmrgkqFlepkakikkWAilcfasqrkvkenkledfikqlvkis 51 
                 p +G+W+  +kqF++p a ++ W +++f+   +v ++++++f+ ql+  +
  CDO70771.1 418 PGQGKWNVVRKQFMQP-AVLRFWGVAVFD---RVMDHEINKFLDQLMGNM 463
                 88**************.***********9...9999********998655 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.5e-08   0.00019      21     129 ..     252     343 ..     230     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.5e-08
                 -HHCCCCTTBEEEETTTTS-CEEEEEEEESS--TTSEECCTTCT..CECCHHHHCCT---ST-TT--EEEEEES-SS----EEEEE-CCCCEEESSBCC CS
         PAZ  21 kkaaealkgliVmtwynnrnktyyvadittdlapsstFpdkdkeneitfaeYfkkkYnieikdqdqplldvdkktesehssqkqiLvpElcdihpisas 119
                  k +  lkg++++++ ++  k   + d+ +  a  ++F+++++    t+a  f+ kYn++++  ++  ++v++           i++ E+c++   +++
  CDO70771.1 252 VKLRVFLKGVRIKPTLSKM-KPRPISDLVR-EAGMQEFDKDGER--WTVARHFQHKYNVQLRFPRMVGIKVGQ---------GAIIPAEFCEV---VPG 334
                 5666667888888888653.6667888865.788899*999766..***************999999999999.........89*********...*** PP

                 CCCTCCCHHH CS
         PAZ 120 qrykkkllps 129
                 q y kk+ p+
  CDO70771.1 335 QLYRKKI-PT 343
                 *999998.65 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.9e-07    0.0018       1      47 []     359     409 ..     359     409 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.9e-07
      ArgoL2   1 eRkksIle...g.vkvlgydddpylrafGisidpqmttVpGRvLppPtlkY 47 
                 eR ++I++   g  ++++y  ++ ++++G+ +++q + ++G v  pP ++Y
  CDO70771.1 359 ERLRDIQNavaGqGQLFDYATSDFMKEAGMAVNTQAMSISGNVIAPPAIRY 409
                 8999999954324566688777899************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 5513.31
//
Query:       CDO70772.1  [L=672]
Description: hypothetical protein BN946_scf184798.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-48  164.4   8.6    4.4e-46  158.1   8.6    2.2  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te
    1.5e-45  155.3   0.2    7.1e-45  153.1   0.2    2.1  1  SRP54        SRP54-type protein, GTPase domain
    5.8e-09   36.0   0.0    2.4e-08   34.0   0.0    2.1  1  SRP54_N      SRP54-type protein, helical bundle domain
    4.3e-05   22.6   0.1    0.00011   21.3   0.1    1.6  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0017   18.1   0.0     0.0035   17.1   0.0    1.4  1  AAA_30       AAA domain
     0.0085   16.2   0.1      0.025   14.6   0.1    1.8  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.034   14.1   0.0    1.8  1  NTPase_1     NTPase
      0.021   14.6   0.0       0.15   11.8   0.0    2.3  2  AAA_24       AAA domain
      0.053   13.0   0.0      0.099   12.1   0.0    1.4  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
      0.057   12.6   0.6        2.7    7.1   0.1    2.3  2  ArsA_ATPase  Anion-transporting ATPase
      0.071   13.0   0.1        1.7    8.5   0.0    2.3  2  AAA_31       AAA domain
      0.081   13.3   1.3       0.46   10.9   0.0    2.6  2  AAA_16       AAA ATPase domain
       0.14   12.4   0.0        1.1    9.6   0.0    2.4  3  AAA_22       AAA domain
       0.19   11.8   0.4        1.4    9.0   0.4    2.3  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   8.6   3.4e-49   4.4e-46       1     288 [.      33     310 ..      33     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 3.4e-49
                  HHHHHHHHHHTTT-SS-.----TTS----S--EEEEETTTTEEEEEE-BTTB--CHHHHHHHHHHHHHHHHHGGGGG...SS-S----TT........ CS
  SRP-alpha_N   1 spiNaLIrdvllEERsgaaasnssfkkdsytLKwtfdnelgLvFVavYqkiLhLsYvDkLLdnvkteFvdlYkpklk...pkttlvecak........ 87 
                  sp+N+L+r++l+E R ++     +++kd y++Kwtf+n+l+L+FV++Yq+iL+L+Y ++LL++ kt+Fv+l++p l+   +     +++         
   CDO70772.1  33 SPVNSLVREALIEGRGSD----GKYEKDGYAVKWTFVNDLELIFVVAYQRILQLTYAEDLLNALKTLFVKLFQPFLTtfvA-----SLHVtssaklsa 121
                  79*************666....77**************************************************8884432.....222233455777 PP

                  .................HHHHHHHHHHHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX...........XXXXXXX...XXXXXX CS
  SRP-alpha_N  88 .............sy..FdeyFdqllrelEasaeaakkskaakepkamksfeeskkskktvksskedkkpegkkkkgakkekdasddstpsatpetsr 170
                               ++  +d++Fd+llr lE++a++++++++ +  +++ +++ ++++ +                                + p++s 
   CDO70772.1 122 staetsaswnfakAFdgWDAVFDKLLRGLEDKAAQERRTRSGHVIRSAVEVTPAARDIN--------------------------------TLPTQSD 187
                  88999999998865589****************98866555442222111111111111................................1122222 PP

                  XXXXXXXXXXX.XXX.XXXXXXXXXXXXX....X..XXXXXXXXXXX....XXXXXXX...XXXXXXXXXXXXXX.XXXXXXXXXXXXXX..XXXXXX CS
  SRP-alpha_N 171 pstpsglltakeagptaedvsrrarkkan....kkrssagassgdeakasksskkkkkkp.kkkgkkaRvWdadg.sadeedkLDySapadesgaeae 262
                       + l++++ +++++++++r r + +    + r+ a ++sg+++ + ++s++++k++ k+k+k +R+W+++  +++++++LD+S ++++s+++a 
   CDO70772.1 188 D----NVLDEERIARNVQALKNRLRGRGAqparRGRGRADVGSGKDSLPGSDSETPSKSKrKSKAKSQRKWGDEApTESDMASLDFSYDSSTSDTHAP 281
                  2....24444455666666666666322223333444555667666666555555555551556666*******54777888*******988877744 PP

                  ...XXXXXXXXXXXXXX.XXXXXXXXXXX CS
  SRP-alpha_N 263 ...aveavdastwgsktdkgefvlkdldd 288
                         vd+ + g++t++g ++++d++ 
   CDO70772.1 282 rvdLSALVDSGSLGTRTQDGLYEVRDWEF 310
                  79877789******************985 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.2   5.5e-48   7.1e-45       3     195 ..     452     670 ..     450     671 .. 0.87

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 5.5e-48
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHH.............TTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEE CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaek.............lgvpvikkkeeadpaavakeavekakeekidvvl 88 
                  i +vG++G+GK t l+K+  +l ++g +vl++a+DtfR +AveQL+++ ++              +v+++++  ++d+a +akea++ a+++++dvvl
  CDO70772.1 452 SITFVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACDTFRSGAVEQLRVHVRNlsmlgvdgatdskGRVELYERGYGKDAAGIAKEAINYARDNDFDVVL 550
                 689**********************************************9984443333333322345666699999********************** PP

                 EEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHS............SCSEEEEESTTS.SSSTTHHHHHHHHHTS-EEEEE CS
       SRP54  89 vDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeavkqakaFkeav............gitgviltklDg.dakgGaalsiaaelklPikfig 174
                 +DTaGr+q ++ lm+ l+k+  + +pd++++v +a++g+eav q ++F++a+            gi+g+ +tk D+ d k Gaals+++ +++Pi+f+g
  CDO70772.1 551 IDTAGRMQDNEPLMRALAKLVATNNPDKIIFVGEALVGNEAVDQLTKFDRALrdfsaasgvqerGIDGMLVTKWDTvDDKVGAALSMTYVTGQPIIFVG 649
                 *********************************************999876433333333333379*********8589******************** PP

                 -SSSTTGEEE--HHHHHHHHH CS
       SRP54 175 vGekiedleefdperlvsrll 195
                 +G++++dl++ +  ++v+++l
  CDO70772.1 650 CGQTYTDLRQLRVANVVQAIL 670
                 ******************998 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.9e-11   2.4e-08       5      62 ..     343     399 ..     340     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS- CS
     SRP54_N   5 lnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekklk 62 
                 l s++++l+g+++++eedl+ +l+ ++++L++++V+ ++ +k++e+v ++ vg kk+ 
  CDO70772.1 343 LGSIFARLTGSKVLTEEDLKPVLEAMKQHLMKKNVAKEISEKICEDVGQSLVG-KKVG 399
                 889**************************************************.7754 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   8.6e-08   0.00011      31     136 ..     452     560 ..     444     577 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.6e-08
                 EEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCC.......TSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT- CS
        MeaB  31 vvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleela.......vdegvfiRslpsrGalGGlaaktrevvllleaaGf 122
                  + + Gv G+Gkst ++++   l+++G rv + a D   +f  G++   ++ +++l+       +d +     l  rG    +a  ++e+++      f
  CDO70772.1 452 SITFVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACD---TFRSGAVEQLRVHVRNLSmlgvdgaTD-SKGRVELYERGYGKDAAGIAKEAINYARDNDF 546
                 57789*****************************99...688889877777777776666555322.22223466778777788888999999999999 PP

                 SEEEEEEESSTTHH CS
        MeaB 123 DvvlietvGvGqse 136
                 Dvvli+t G  q +
  CDO70772.1 547 DVVLIDTAGRMQDN 560
                 99999999988765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.8e-06    0.0035      23     124 ..     455     584 ..     447     587 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.8e-06
      AAA_30  23 ltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.........eelgieastiakllkrlk................grarlepg.tllivD 95 
                  +G+ G GK+t l+++   + ++g+rv+++A     + +++           lg++++t  k   +l                 +  + +++ +++++D
  CDO70772.1 455 FVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACDTFRSGAVEqlrvhvrnlSMLGVDGATDSKGRVELYergygkdaagiakeaiN-YARDNDfDVVLID 552
                 689****************************887655555522255555534444444444433322266777777777777653.2234556****** PP

      AAA_30  96 Eagmv..dtkqlaallkaaekag.akvilvGD 124
                  ag +  +   ++al+k +++++  k+i+vG 
  CDO70772.1 553 TAGRMqdNEPLMRALAKLVATNNpDKIIFVGE 584
                 ***986666789******999878*******6 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.9e-05     0.025       9      80 ..     460     583 ..     456     628 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 GvGK+t + + ++ l ++g+rVl   +D+ ++ +  +e+l+  +++                                                     
  CDO70772.1 460 GVGKSTNLSKVCFWLIQNGFRVLIAACDTFRSGA--VEQLRVHVRNlsmlgvdgatdskgrvelyergygkdaagiakeainyardndfdvvlidtagr 556
                 9***************************985554..355555555577777777777777777777777777777777777777777777777777777 PP

                 ..CCHCCCHHHHHHCHCHHHH..EEEEE CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..dlkrllellealgkkkalllkiagvv 80 
                   d + l + l++l+ ++++  ki++v+
  CDO70772.1 557 mqDNEPLMRALAKLVATNNP-DKIIFVG 583
                 77666666666666665433.5555554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.034       4     132 ..     455     582 ..     452     602 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
                 EE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE----.---EEEEEET.T--EEEEEETT.---SSEETTEEE-H.HHHHHHHHHHHHHHH.HHH-E CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgvkvgGfyteevregg.rrigFkivdlasgeegiLarve.akreprvgkyvvdv.esfeelalealrkal.seadv 98 
                   G  GvGK+T ++kv+  l ++g++v    +   r+g  ++   ++ +l      +L   + + ++ rv+ y     +++  +a ea++ a  ++ dv
  CDO70772.1 455 FVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACDTFRSGAvEQLRVHVRNL-----SMLGVDGaTDSKGRVELYERGYgKDAAGIAKEAINYARdNDFDV 548
                 56999*******************************66525667777777.....3333333334444555555444134777888888877768999* PP

                 EEE---STTGGG-HHHHHHHHHHHTTTSEEEEE- CS
    NTPase_1  99 iviDEiGkmElkskkfkeaveevLksekpvlavi 132
                 ++iD  G+m  + + ++   + v ++++  ++ +
  CDO70772.1 549 VLIDTAGRMQDNEPLMRALAKLVATNNPDKIIFV 582
                 *********8776665554444444555555554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.15       2      78 ..     450     558 ..     449     569 .. 0.77
   2 ?   -0.6   0.0      0.71   9.1e+02      71     136 ..     592     656 ..     591     663 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      AAA_24   2 klkiliyGpsgiGKTtlakel.......gpkplfidtek.Glksldadkfpdie........swedfldevvel.................aaeladyk 67 
                 +++i  +G +g+GK+t +++        g ++l+  ++   + +++  ++  ++        + +d +  v+                   +a ++d++
  CDO70772.1 450 PYSITFVGVNGVGKSTNLSKVcfwliqnGFRVLIAACDTfRSGAVEQLRVH-VRnlsmlgvdGATDSKGRVELYergygkdaagiakeainYARDNDFD 547
                 578999***************889888877777766666556677777755.44365665554444444444448899999999999999999999*** PP

      AAA_24  68 tlviDtidele 78 
                 ++ iDt++ + 
  CDO70772.1 548 VVLIDTAGRMQ 558
                 ******99875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.71
      AAA_24  71 iDtideleelclaevirqnekaeskedkgdgkG.ygelaeefrrllkklqelrknvifiahektrkd 136
                 +D ++++ +  ++        ++++  +g +   ++ + ++++ +l + + +++ +if++  +t +d
  CDO70772.1 592 VDQLTKFDRALRDFSAASGVQERGI--DGMLVTkWDTVDDKVGAALSMTYVTGQPIIFVGCGQTYTD 656
                 6778888555555444444444455..4444555************************998777665 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-05     0.099       3      38 ..     453     488 ..     451     503 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
   Fer4_NifH   3 iaiyGkGGiGksttsqnlsaalaemgkkvlivGCDP 38 
                 i++ G  G+Gkst+++ +   l ++g +vli  CD 
  CDO70772.1 453 ITFVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACDT 488
                 7788999***************************95 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0021       2.7       4      38 ..     453     487 ..     451     510 .. 0.93
   2 ?    3.7   0.1     0.023        29     111     133 ..     532     554 ..     493     556 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0021
                  EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   4 ilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  i++ G  GVGK+t  + +  +l ++g +vl+ + D
   CDO70772.1 453 ITFVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACD 487
                  789999*************************9887 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.023
                  HHHHHHHHHHHCSSSSEEEEESB CS
  ArsA_ATPase 111 lsfeellkyvkeeeydvvvlDta 133
                   + +e ++y +++++dvv++Dta
   CDO70772.1 532 GIAKEAINYARDNDFDVVLIDTA 554
                  5567788999************9 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0013       1.7      12      40 ..     460     488 ..     453     506 .. 0.90
   2 ?    1.6   0.0      0.18   2.3e+02     106     126 ..     533     554 ..     515     561 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDp 40 
                 GvGK+T+  +++ +l ++g +vL+  +D+
  CDO70772.1 460 GVGKSTNLSKVCFWLIQNGFRVLIAACDT 488
                 9***********************98886 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.18
      AAA_31 106 ilkellekvkde.YDyiiiDcp 126
                 i ke+++  +d+ +D+++iD+ 
  CDO70772.1 533 IAKEAINYARDNdFDVVLIDTA 554
                 5678887776555*******86 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.5      0.78   9.9e+02      79     124 ..     140     204 ..      72     217 .. 0.57
   2 ?   10.9   0.0   0.00036      0.46      19      84 ..     445     504 ..     433     582 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.78
      AAA_16  79 eellrqlldeaesaeleawrekleealaavpelagaea...................srllellk 124
                 + ++ +ll+ +e++++++ r++   +++++ e+++a++                    r  ++lk
  CDO70772.1 140 DAVFDKLLRGLEDKAAQERRTRSGHVIRSAVEVTPAARdintlptqsddnvldeeriARNVQALK 204
                 34444455555555555555555555554444544444444455544455555533444444444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00036
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrq 84 
                   + +p ++ ++G  GvGKs+ + ++   l ++g+ +l + cd ++s+      +++l r ++ + 
  CDO70772.1 445 SQQRQPYSITFVGVNGVGKSTNLSKVCFWLIQNGFRVLIAACDTFRSG-----AVEQL-RVHVRNL 504
                 4566778999*************99998999999***********444.....77777.5455444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.4   8.2e+03      51      73 ..     137     160 ..     130     173 .. 0.68
   2 ?   -1.7   0.0       2.4   3.1e+03      72      91 ..     358     377 ..     313     428 .. 0.69
   3 ?    9.6   0.0   0.00083       1.1       4     128 ..     449     582 ..     446     589 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.4
      AAA_22  51 tsskdllrellralglelka.erl 73 
                  +++ ++ +llr l++++   +r 
  CDO70772.1 137 DGWDAVFDKLLRGLEDKAAQeRRT 160
                 478899999999999877764222 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
      AAA_22  72 rlsseellealeqalrarav 91 
                 + +++ +lea+ q+l ++ v
  CDO70772.1 358 EEDLKPVLEAMKQHLMKKNV 377
                 55555555555555554443 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00083
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglelka..............erlsseellealeqal 86 
                 + ++++ +G  G+GK+t l ++  +l +       + +v+   ++   s+  ++l+ ++ +   l+ ++              ++++   + +   +++
  CDO70772.1 449 QPYSITFVGVNGVGKSTNLSKVCFWLIQN------GFRVLiaACDTFRSGAVEQLRVHVRNLSMLGVDGatdskgrvelyergYGKDAAGIAKEAINYA 541
                 678999*******************9443......5666544777777777777777776666655555669999999998888888888888888888 PP

      AAA_22  87 raravielliiDEaqhlr.seealeeLrsllnlsrkgvqliLv 128
                 r+ +   +++iD a ++  +e +++ L +l+     + ++i+v
  CDO70772.1 542 RDNDF-DVVLIDTAGRMQdNEPLMRALAKLVA-TNNPDKIIFV 582
                 88888.89999999999543445555544443.2334445555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4    0.0011       1.4       2      87 ..     453     589 ..     452     616 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
                 EEEEESTTSSHHHHHHHHH.....TS..TEEESSSTTSSSSEEEEEEEETTEE..........................................EEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt.....ge..kaivsdkpgtTrdinegrvklkgke..........................................ielv 51 
                 + +vG   vGKSt +++ +     +   + i++   +    +++ rv++++ +                                          ++l+
  CDO70772.1 453 ITFVGVNGVGKSTNLSKVCfwliqNGfrVLIAACDTFRSGAVEQLRVHVRNLSmlgvdgatdskgrvelyergygkdaagiakeainyardndfdVVLI 551
                 678999999999999999866664224244666677777777777777554334555556666667777777777777777777788888888889*** PP

                 ECGGCSSHHHHHHHHHHHHHH...HHCTSEEEEEEETT..T CS
    MMR_HSR1  52 DtpGliegaseekglgkafla...leeadlillvvdas..e 87 
                 Dt+G ++   +++ l +a+++    ++ d i++v +a   +
  CDO70772.1 552 DTAGRMQ---DNEPLMRALAKlvaTNNPDKIIFVGEALvgN 589
                 ****444...4444444444411133458888888755552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.72u 0.35s 00:00:01.06 Elapsed: 00:00:00.55
# Mc/sec: 3674.99
//
Query:       CDO70773.1  [L=213]
Description: hypothetical protein BN946_scf184798.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1607.40
//
Query:       CDO70774.1  [L=213]
Description: hypothetical protein BN946_scf184798.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-11   44.9   0.2    1.7e-06   28.2   0.0    2.1  2  Img2             Mitochondrial large subunit ribosomal protei
  ------ inclusion threshold ------
      0.067   13.0   0.0       0.18   11.6   0.0    1.7  2  INT_SG_DDX_CT_C  INTS6/SAGE1/DDX26B/CT45 C-terminus
       0.17   12.0   0.0         12    6.0   0.0    2.2  2  DUF1905          Domain of unknown function (DUF1905)
       0.25   10.9   0.0       0.46   10.0   0.0    1.3  1  ASD2             Apx/Shroom domain ASD2


Domain annotation for each model (and alignments):
>> Img2  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.8e-10   1.7e-06       2      38 ..      64      99 ..      63     114 .. 0.91
   2 !   14.8   0.0   5.7e-06     0.025      38      80 .]     162     213 .]     159     213 .] 0.72

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3.8e-10
        Img2  2 pYfvrRtrsgslPVYtdvkrggtkkltvirkieGDia 38
                pY+v+R++ gs+PVY+++++  tk ++++r ++G+++
  CDO70774.1 64 PYHVPRNSRGSIPVYSQIRN-HTKYFILLRDVQGNVE 99
                9******************8.8999**********97 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.7e-06
        Img2  38 aalredLrkalee.........lvkvnevtgkieikGdrveevkkfLeskgF 80 
                 +al +dL++ l           +++++++++ +   G+++++v ++L ++gF
  CDO70774.1 162 QALMHDLQTSLFPqgseeaarlKISLDRRQRIVLSGGRWKNQVVEWLVQRGF 213
                 7888999999987665554433366665555555556**************9 PP

>> INT_SG_DDX_CT_C  INTS6/SAGE1/DDX26B/CT45 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05      0.18      19      39 ..      82     102 ..      77     105 .. 0.91
   2 ?   -3.1   0.0       1.6     7e+03      47      53 ..     178     184 ..     167     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
  INT_SG_DDX_CT_C  19 rnyekiFklLeevqGslevrk 39 
                      rn++k F lL+ vqG++evr 
       CDO70774.1  82 RNHTKYFILLRDVQGNVEVRI 102
                      89*****************95 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
  INT_SG_DDX_CT_C  47 kEAaRfk 53 
                      +EAaR+k
       CDO70774.1 178 EEAARLK 184
                      6999987 PP

>> DUF1905  Domain of unknown function (DUF1905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.013        60      28      67 ..      68     107 ..      43     110 .. 0.83
   2 ?    6.0   0.0    0.0028        12      45      75 ..     167     198 ..     163     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
                 ..-.SS-EEEEEEETT.EEEEEEEESSTT-EEEEE-HHHH CS
     DUF1905  28 ktggkgsvkVkatidgttfrtslfpmgkggyiLpvkaavr 67 
                 +++++gs++V  +i ++t    l ++ +g+  + +++a+r
  CDO70774.1  68 PRNSRGSIPVYSQIRNHTKYFILLRDVQGNVEVRISRALR 107
                 6789*************99999999999999999988887 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0028
                 EEEEEEEESST.T-EEEEE-HHHHHHHT--TT CS
     DUF1905  45 tfrtslfpmgk.ggyiLpvkaavrkaigkeaG 75 
                   +tslfp+g+ ++  L ++ + r++i ++ G
  CDO70774.1 167 DLQTSLFPQGSeEAARLKISLDRRQRIVLSGG 198
                 679********99999******9999988777 PP

>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001      0.46     220     242 ..     172     195 ..     162     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
        ASD2 220 LleQ.ledAkeLKenldrRervvs 242
                 L  Q  e+A +LK  ldrR+r+v 
  CDO70774.1 172 LFPQgSEEAARLKISLDRRQRIVL 195
                 4444379***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1578.27
//
Query:       CDO70775.1  [L=452]
Description: hypothetical protein BN946_scf184798.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-16   60.0   3.2    3.3e-16   59.5   3.2    1.2  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   3.2   1.8e-20   3.3e-16      15     224 ..      44     245 ..      37     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 1.8e-20
                     EEEETTCEEEEEEEBTEE....SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEE..EETTEEEEEEEEEETTCCCSEEEEEEESST CS
  Glyco_hydro_43  15 ilrvgedyYlvtstfewf....pglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeis..khdgkyylyytatkkgeakqgifvvtadsp 103
                     il+vg+++Y++           + +++++S+dLvnW   +++l    ++ +  +n+   P++     +  y + + +++ + +   ++v+ta++p
      CDO70775.1  44 ILKVGSTFYWFGEDKSHNsalfKAVSCYTSTDLVNWARQNDALSPIAGTMISTNNVVERPKVIfnSKNSEYVMWFHSDSSNYGAAMVGVATAKTP 138
                     7889999999875443323344*********************9999999999998888887655789999999997777777777********* PP

                     TS--EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETTEEEEEEE CS
  Glyco_hydro_43 104 eGpwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdgyyYLlaa 198
                      Gp++ +++ k  g  + D +lf+d   ++Yl++++ +    +++  + +ld ++  +++ +   +++g+      + E+P ++kr+g y+L+a+
      CDO70775.1 139 CGPYTYKGSWKPLGADSRDEGLFQDG--SAYLLYASDN----NQNFKISQLDSNYYNVTAVV--SQMNGA------TLEAPGIVKRNGVYWLIAS 219
                     **********877**********975..********44....479********999988877..444454......8****************** PP

                     ESTSSTTEEEEEEEESSTTSGGEEEC CS
  Glyco_hydro_43 199 eggtgseyavvvarsksllgPyewkk 224
                       +   +   +   ++sl gP++ + 
      CDO70775.1 220 HTSGWDPNPNKAFHATSLAGPWSSQA 245
                     65555566677788889****98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3095.59
//
Query:       CDO70776.1  [L=339]
Description: hypothetical protein BN946_scf184798.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.1e-111  369.7   5.3   5.9e-111  369.2   5.3    1.2  1  SOR_SNZ       SOR/SNZ family
    8.9e-11   41.6   3.4    1.4e-07   31.1   0.1    2.2  2  ThiG          Thiazole biosynthesis protein ThiG
    1.2e-05   24.6   0.2      0.099   11.7   0.0    2.5  2  Dus           Dihydrouridine synthase (Dus)
    0.00019   21.5   0.0    0.00051   20.1   0.0    1.7  1  TetR_C_27     Tetracyclin repressor-like, C-terminal domain
     0.0043   16.3   0.2        0.1   11.8   0.0    2.3  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
     0.0051   16.2   4.4       0.14   11.5   0.1    2.3  2  NMO           Nitronate monooxygenase
     0.0093   15.5   0.2        0.2   11.1   0.0    2.6  2  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.016   14.4   0.0       0.53    9.4   0.0    2.6  3  IGPS          Indole-3-glycerol phosphate synthase
       0.12   12.8   0.1        0.2   12.1   0.1    1.3  1  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> SOR_SNZ  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.2   5.3  2.9e-114  5.9e-111       2     207 .]      52     257 ..      51     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 369.2 bits;  conditional E-value: 2.9e-114
                 THHHHHHHHTTTSSEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHH-S------HHHHHHHHHH-SS-EEEEEETT-HHHHHHHHHTT-SEEEEET CS
     SOR_SNZ   2 lkvkaglaemlkgGvimdvvnaeqakiaeeaGavavmalervpadirkeggvarmsdpklikeikeavsipvmakvriGhfveaqilealgvdyiDese 100
                 + vk+gla+mlkgGvimdvvnaeqa+iaeeaGa+avmalervpadir++ggvarmsdpk+ikei++av+ipvmakvriGhfveaqil+a+g+dyiDese
  CDO70776.1  52 FGVKSGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRANGGVARMSDPKMIKEIVDAVTIPVMAKVRIGHFVEAQILQAIGIDYIDESE 150
                 579************************************************************************************************ PP

                 TS--S-SS----GGG-SS-EEEEESSHHHHHHHHHHT-SEEEEES-TTS--THHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHGGGHHHHHHHHHTT CS
     SOR_SNZ 101 vltpadeeahidkkkfkvpfvcGarnlgealrriaeGaamirtkGeagtGdvveavrhvrkikeeirklkslseeelvalakelkaplelvkevaelgr 199
                 vltpad+e+hi+k+ fkvpfvcGarnlgealrri+eGaa+irtkGeagtG+vveavrh r++++eirk++ +seeel+a+ak++++p++l+ke+a+l++
  CDO70776.1 151 VLTPADDEHHINKHPFKVPFVCGARNLGEALRRISEGAAFIRTKGEAGTGNVVEAVRHQRAVMSEIRKASVMSEEELYAYAKHTQVPYHLLKETARLKH 249
                 *************************************************************************************************** PP

                 S-S---T. CS
     SOR_SNZ 200 lpvvnfaa 207
                 lpvvnfaa
  CDO70776.1 250 LPVVNFAA 257
                 ******98 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   1.0   0.00011      0.22     136     201 ..      75     146 ..      59     174 .. 0.80
   2 !   31.1   0.1   7.2e-11   1.4e-07     175     225 ..     249     301 ..     216     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                 HHHHHHHTT-SEBEEB...SSSTTS----S...-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 136 larrleevGcaavmPl...aapiGsglGll...nkealkiiieeakvPvivDAGigspsdaaqamelGadav 201
                  ar  ee+G+ avm l    a i ++ G++   +++++k i++ +++Pv+    ig+  +a     +G+d +
  CDO70776.1  75 QARIAEEAGACAVMALervPADIRANGGVArmsDPKMIKEIVDAVTIPVMAKVRIGHFVEAQILQAIGIDYI 146
                 466679********97333589999999752226899*******************9999998888888866 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 7.2e-11
                 SS-BEEES..---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH CS
        ThiG 175 kvPvivDA..GigspsdaaqamelGadavllntavaeakdpvamArafklave 225
                 ++Pv+  A  Gi +p daa  m+lG+d+v++ + + ++ dp++ Ara+ +av+
  CDO70776.1 249 HLPVVNFAagGIATPADAALMMQLGCDGVFVGSGIFHSGDPAKRARAIVQAVT 301
                 67887544349***************************************996 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00011      0.22     100     133 ..     102     131 ..      93     144 .. 0.76
   2 !   11.7   0.0     5e-05     0.099     181     225 ..     249     294 ..     231     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                 GGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESES CS
         Dus 100 GaaLlrkpdlvaqivkavvkaveiPvtvkirigi 133
                 G a + +p    +++k++v+av iPv +k+rig 
  CDO70776.1 102 GVARMSDP----KMIKEIVDAVTIPVMAKVRIGH 131
                 55555555....577888999***********96 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5e-05
                 H-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHC..CSTTHHHH CS
         Dus 181 avsipviaNGdIkdaedaqaileetGadgvmigrgal..gnPwlfae 225
                 +++++ +a G+I ++ da  +++  G+dgv +g g    g+P+  a+
  CDO70776.1 249 HLPVVNFAAGGIATPADAALMMQL-GCDGVFVGSGIFhsGDPAKRAR 294
                 466777899*********999998.********99742256666554 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00051      61      99 ..     280     318 ..     276     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
                 HCT-STT--HHHHHHHHHHHSGGGTSHHHHHHHGGG--H CS
   TetR_C_27  61 aaGeFkaadpeaaaravfdatarfhhPalaaewsdpeie 99 
                  +G F++ dp++ ara+++a++++ +P ++ae+s++  e
  CDO70776.1 280 GSGIFHSGDPAKRARAIVQAVTHYNNPKILAEISEDLGE 318
                 589*****************************9987655 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.048        96     130     170 ..     105     146 ..      63     157 .. 0.71
   2 !   11.8   0.0   5.1e-05       0.1     134     177 ..     238     284 ..     224     299 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.048
                 SS--HHHHHHHHHT.T--EEEES---SHHHHHHHHTT--SEE CS
        NanE 130 aepDfalvkalsea.glkviaeGrintPekakkaieiGvdav 170
                    D +++k++++a  + v+a  ri    +a+    iG+d +
  CDO70776.1 105 RMSDPKMIKEIVDAvTIPVMAKVRIGHFVEAQILQAIGIDYI 146
                 456778888888773466888888888888888888888765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.1e-05
                 HHHHHH...HHHTT--EEEES---SHHHHHHHHTT--SEEEE-HHHH CS
        NanE 134 falvka...lseaglkviaeGrintPekakkaieiGvdavvvGsait 177
                 ++l+k+   l++  +   a G i tP+ a+ ++++G d v vGs i 
  CDO70776.1 238 YHLLKEtarLKHLPVVNFAAGGIATPADAALMMQLGCDGVFVGSGIF 284
                 55555411144444556799************************985 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   1.3    0.0046       9.2     140     198 ..      67     125 ..      56     140 .. 0.81
   2 !   11.5   0.1   7.3e-05      0.14     184     225 ..     240     283 ..     228     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0046
         NMO 140 iptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviA 198
                 i+ +  +++ar++e++Ga a+ +        + +  v+  +  +++++++dav iPv+A
  CDO70776.1  67 IMDVVNAEQARIAEEAGACAVMALERVPADIRANGGVARMSDPKMIKEIVDAVTIPVMA 125
                 55666788899999999888887666666666655666678899**************9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.3e-05
         NMO 184 LvpqvldavdiPvi..AaGGiidrrgvaaaLalGAsgvqigtrf 225
                 L+++ +    +Pv+  AaGGi +  + a ++ lG  gv +g+  
  CDO70776.1 240 LLKETARLKHLPVVnfAAGGIATPADAALMMQLGCDGVFVGSGI 283
                 5556666667899777*************************965 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.11   2.1e+02     178     196 ..     107     125 ..      70     146 .. 0.67
   2 !   11.1   0.0   9.9e-05       0.2      63     108 ..     239     286 ..     226     338 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.11
                   --HHHHHHHHHHHSSEEEE CS
  His_biosynth 178 pdleltkelaeavkipvia 196
                    d +++ke+ +av+ipv+a
    CDO70776.1 107 SDPKMIKEIVDAVTIPVMA 125
                   3445555555555555554 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.9e-05
                   HHHHHHHHH-SSEE..EEESSSSSHHHHHHHHHCT-SEEEESHHHHH- CS
  His_biosynth  63 dlveeiaeevfipv..qvGGGIrsledveelleagadkviigtaavkn 108
                   +l++e+a+  ++pv     GGI +  d++ ++++g+d v +g+  +++
    CDO70776.1 239 HLLKETARLKHLPVvnFAAGGIATPADAALMMQLGCDGVFVGSGIFHS 286
                   444444444444442234555555555555555555555555553332 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.054   1.1e+02      61      86 ..      63      88 ..      60     141 .. 0.88
   2 ?   -1.9   0.0      0.73   1.5e+03      43      58 ..     205     220 ..     197     235 .. 0.77
   3 ?    9.4   0.0   0.00027      0.53     210     252 ..     252     294 ..     235     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.054
                TEESBSS--HHHHHHHHTTT.-SEEE CS
        IGPS 61 kgliredfdpaeiAkkyeeagAsaiS 86
                kg + +d++ ae+A+  eeagA a+ 
  CDO70776.1 63 KGGVIMDVVNAEQARIAEEAGACAVM 88
                78889999**************9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.73
                 CHTTS-EEEEEE-SEE CS
        IGPS  43 esekklaliaEvKkaS 58 
                   +++ a++ E++kaS
  CDO70776.1 205 AVRHQRAVMSEIRKAS 220
                 4466888999999998 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00027
                 SEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHH CS
        IGPS 210 vllvaeSGiktredveklkeegvnafLvGeslmrqedvekair 252
                 v+  a  Gi+t++d+  + + g +++ vG+ + ++ d +k  r
  CDO70776.1 252 VVNFAAGGIATPADAALMMQLGCDGVFVGSGIFHSGDPAKRAR 294
                 6778999**************************9999988776 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.9e-05       0.2      66     122 ..      29      84 ..       2     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.9e-05
  RNA_pol_Rpc4  66 kkkkkkkskalklkslpeGviGkLlvhkSGkvelrlGgillevspGaqpsFlqevvv 122
                   + +++ + +++k k+ ++G +G+  v kSG +++  Gg++++v  + q+  ++e+ +
    CDO70776.1  29 SGTPVVAPTRTKDKDGASGSVGTFGV-KSGLAQMLKGGVIMDVVNAEQARIAEEAGA 84 
                   455566667777888889******99.8********************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2406.49
//
Query:       CDO70777.1  [L=103]
Description: hypothetical protein BN946_scf184798.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 780.71
//
Query:       CDO70778.1  [L=310]
Description: hypothetical protein BN946_scf184798.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2357.07
//
Query:       CDO70779.1  [L=213]
Description: hypothetical protein BN946_scf184798.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-09   36.8   0.0      9e-09   35.2   0.0    1.7  1  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0     5e-13     9e-09      14     126 ..      18     164 ..       8     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 5e-13
                 S-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHT.......... CS
    Cyclin_N  14 lpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyit.......... 102
                 ++++d + +  el+ + Ra  ++ + e  + ++ ++  +++a  ++ Rf    s+++  +  +g+++L+lA+K+ee++  +++dl+ +           
  CDO70779.1  18 PSREDGIPE--ELELDLRAFGCKLIHEAGVLLRQKQVAVATAQILFQRFWYVTSMKQFGIGDIGMGALFLASKLEECQ-IRMRDLINVYdlllqrtahk 113
                 444555543..456789************************************************************5.88999999988999999999 PP

                 .........................TT.SS-.HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 103 .........................de.aft.eeeilemErliLetLnfdl 126
                                          ++  ++ ++ ++ +E++iL+ L f++
  CDO70779.1 114 lkhpsgtsssglpcpefkyvpmsyfGNtFYDlKDALVVAEMQILKRLGFNV 164
                 999999999999999999999999966355535678899999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1567.90
//
Query:       CDO70780.1  [L=204]
Description: hypothetical protein BN946_scf184798.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-65  218.7   1.5    3.9e-65  218.4   1.5    1.1  1  Ras          Ras family
    1.6e-36  125.1   1.3    2.2e-36  124.7   0.1    1.8  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.3e-17   62.5   0.2    4.1e-17   62.2   0.2    1.1  1  Arf          ADP-ribosylation factor family
    6.6e-08   32.6   2.4    0.00045   20.2   0.9    2.3  2  RsgA_GTPase  RsgA GTPase
    9.5e-06   25.7   0.2    5.5e-05   23.2   0.0    2.1  2  MMR_HSR1     50S ribosome-binding GTPase
    1.1e-05   24.9   0.1    1.4e-05   24.6   0.1    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
    1.2e-05   24.8   0.1    1.5e-05   24.5   0.1    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    1.7e-05   24.4   0.5    3.8e-05   23.3   0.4    1.7  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0019   18.6   0.3      0.012   16.0   0.0    2.1  2  AAA_16       AAA ATPase domain
     0.0035   17.8   0.7       0.52   10.7   0.0    2.6  2  AAA          ATPase family associated with various cellular a
  ------ inclusion threshold ------
       0.01   15.4   0.1      0.057   13.0   0.1    2.0  1  FeoB_N       Ferrous iron transport protein B
      0.015   14.8   1.3       0.18   11.3   0.0    2.6  3  AAA_7        P-loop containing dynein motor region
      0.023   14.4   0.9       0.12   12.1   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
      0.028   14.7   0.6      0.067   13.5   0.0    2.2  2  AAA_22       AAA domain
      0.035   14.1   0.0      0.066   13.2   0.0    1.8  1  AAA_5        AAA domain (dynein-related subfamily)
      0.064   13.8   0.5       0.15   12.5   0.5    1.9  1  ABC_tran     ABC transporter
      0.073   12.3   0.0       0.17   11.1   0.0    1.6  2  Septin       Septin
        0.1   12.0   0.0       0.27   10.6   0.0    1.7  2  TniB         Bacterial TniB protein


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.4   1.5   3.9e-68   3.9e-65       1     161 [.      11     171 ..      11     172 .. 0.99

  Alignments for each domain:
  == domain 1  score: 218.4 bits;  conditional E-value: 3.9e-68
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK++lllrf++d+++e+y+sTigvdf++++ie++gk+vkl+iwDTAGqe+f++++++yyr+a+gi++vyd+t++++f+nvk+w++ei r
  CDO70780.1  11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDNDTFTNVKQWLQEIDR 109
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+e v+ +LvGnK+Dl++k++v+++ ++e+a++lg++fletSAk+++nve+af +++++i+
  CDO70780.1 110 YASEGVNKLLVGNKSDLTSKKVVEYSVAKEFADSLGIAFLETSAKNATNVEQAFLTMAKQIK 171
                 ***********************************************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.1   2.2e-39   2.2e-36       1     119 [.      11     125 ..      11     126 .. 0.91
   2 ?   -1.9   0.0       3.6   3.6e+03      26      48 ..     138     160 ..     129     181 .. 0.54

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 2.2e-39
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ll rf +d+++e++ stigvdf+ +++ +++g       k+vkl+iWDtaGqerfr+++++y+r+a+ +i+vyd   +++++n+k
  CDO70780.1  11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-ELEG-------KTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDvtdNDTFTNVK 101
                 89**********************************98876.4544.......6899******************************976566889*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                 +Wl+e++++a++  + +lvgnk D
  CDO70780.1 102 QWLQEIDRYASEGvNKLLVGNKSD 125
                 *********9986478******99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.6
                 -EEETTTTEEEEEEECGGSGGCT CS
         Roc  26 ekekstigvdfltkevtkikgve 48 
                 ++    +g+ fl++++++ ++ve
  CDO70780.1 138 KEFADSLGIAFLETSAKNATNVE 160
                 55555666666665554443332 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.2   4.1e-20   4.1e-17      15     132 ..      10     131 ..       2     175 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.1e-20
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 +++ll+G  + GK+ +l ++ ++  ++  + Tig  f+++++e   k++k+++wD  Gqe+ R + ++Y++  +++i v D++d++ +++ k+ L+++ 
  CDO70780.1  10 FKLLLIGDSGVGKSCLLLRFADDTYTEsYISTIGvdFKIRTIELegKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDNDTFTNVKQWLQEI- 107
                 799*******************99877578898744677777665599************************************************97. PP

                 TSGCCTTSEEEEEEE-TTSTTSS- CS
         Arf 109 eeeelkevallvlaNKqDlpeals 132
                 ++   + v  l+++NK Dl++   
  CDO70780.1 108 DRYASEGVNKLLVGNKSDLTSKKV 131
                 6677899***********986543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00013      0.13     103     122 ..      13      32 ..      10      84 .. 0.83
   2 !   20.2   0.9   4.5e-07   0.00045      41     116 ..     109     189 ..      69     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +l+G SGvGKS L+ +++ +
   CDO70780.1  13 LLIGDSGVGKSCLLLRFADD 32 
                  79***********9877765 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4.5e-07
                  HHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHH....HHHHHCTTSEEEEECSTTSSHHHHH CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegle....elkellkdktsvlvGqSGvGKStLi 116
                   + ++g++ ++v nK Dl++++  e++  ke   +lg+++l +sak+ +++e    ++++++kd++     + G GKS+ i
   CDO70780.1 109 RYASEGVNKLLVGNKSDLTSKKVvEYSVAKEFADSLGIAFLETSAKNATNVEqaflTMAKQIKDRMGSTSTNAGTGKSSTI 189
                  457899***************998899999999*************998887222256777777777777789*****977 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.5e-08   5.5e-05       2     102 ..      12     109 ..      11     123 .. 0.60
   2 ?    0.0   0.0      0.88   8.8e+02      37      73 ..     132     166 ..     116     176 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.5e-08
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeel 97 
                  +++G + vGKS L+ +  +++   s +     d + ++++l+g   +++++Dt+G  e   + + ++ ++ +   a+ i++v d++ +++++++++ l
  CDO70780.1  12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGktVKLQIWDTAG-QE---RFRTITSSYYR--GAHGIIVVYDVTdNDTFTNVKQWL 104
                 579****************975544444444444444444433323669*******.54...23355666553..599*******88533444444444 PP

                 HHHHH CS
    MMR_HSR1  98 eelle 102
                 +e+ +
  CDO70780.1 105 QEIDR 109
                 44432 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.88
                 EEEEEEETTEEEEEEECGGCS..S.HHHHHHHHHHHHHHH CS
    MMR_HSR1  37 negrvklkgkeielvDtpGli..e.gaseekglgkaflal 73 
                 +e+ v+      e++D  G+   e +a++  ++++afl +
  CDO70780.1 132 VEYSVA-----KEFADSLGIAflEtSAKNATNVEQAFLTM 166
                 334343.....37889999523343444444788888764 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   1.4e-08   1.4e-05       6     128 ..      12     130 ..       8     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
                 EEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 +ll+G s  GK  l+ r   d+++++++S     +  ++   + k  kl++ D  G+e++r+  +    + + ++g++ v D t d+   ++v  +l e
  CDO70780.1  12 LLLIGDSGVGKSCLLLRFADDTYTESYISTiGVDFKIRTieLEGKTVKLQIWDTAGQERFRTITSS---YYRGAHGIIVVYDVT-DNDTFTNVKQWLQE 106
                 79***************************97667777663345667788899*********86555...5889*****999988.77799********* PP

                 HHHHHHHHTT---EEEEEE-TTSTT-- CS
       SRPRB 102 illiteklkdavdiliACnKqelflak 128
                 i        ++v+ l+  nK++l+  k
  CDO70780.1 107 IDRYAS---EGVNKLLVGNKSDLTSKK 130
                 976665...899999999****98654 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.5e-08   1.5e-05       1     127 [.      11     130 ..      11     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.5e-08
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiF.dnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G sg GK+++      d y+   + ++g+  +++  e+   + ++l++wD  Gqe+f + +     ++ +r    +i V Dv+    ++++++ 
  CDO70780.1  11 KLLLIGDSGVGKSCLLLRFAdDTYTESYISTIGVDFKIRTIEL-EGKTVKLQIWDTAGQERFRTIT-----SSYYRGAHGIIVVYDVT---DNDTFTNV 100
                 89************98664413455555556666666665555.35678************98876.....6778899999999**99...45667777 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmDliqed 127
                 k+ l+++ +y  e   + l+ +K Dl +++
  CDO70780.1 101 KQWLQEIDRYASEGVNKLLVgNKSDLTSKK 130
                 788888887766655555554677777665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.4   3.8e-08   3.8e-05      56     142 ..      46     134 ..       9     184 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.8e-08
                 SSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHH CS
    GTP_EFTU  56 iksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkei 142
                  k+ +i+le  +k+ ++++ Dt G + F   ++  +r ++g ++v d+++      v++  +e+ r   +egv+  ++ NK D + +++ e 
  CDO70780.1  46 FKIRTIELE--GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDNdtftnVKQWLQEIDR-YASEGVNKLLVGNKSDLTSKKVVEY 134
                 466677777..**************************************98766634444444444.4568999**********96655432 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05     0.012      27     106 ..      12     112 ..      11     172 .. 0.69
   2 ?    0.4   0.3      0.78   7.7e+02      32      41 ..     180     189 ..     178     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
      AAA_16  27 vllsGesGvGKsslvrellr.alekd...........ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaelea 96 
                 +ll+G+sGvGKs l+ ++++  ++++           + i l+gk+++l       ++++++ + e +r + +                  ++ +++ +
  CDO70780.1  12 LLLIGDSGVGKSCLLLRFADdTYTESyistigvdfkiRTIELEGKTVKL-------QIWDTAGQ-ERFRTITSSyyrgahgiivvydvtdnDTFTNVKQ 102
                 79*************8887625555566666666544333366666666.......67777745.7777766666666666666666666666666666 PP

      AAA_16  97 wrekleeala 106
                 w +++++ ++
  CDO70780.1 103 WLQEIDRYAS 112
                 6666666555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.78
      AAA_16  32 esGvGKsslv 41 
                 ++G+GKss +
  CDO70780.1 180 NAGTGKSSTI 189
                 58*****988 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00053      0.52       1      64 [.      12      88 ..      12     133 .. 0.69
   2 ?    4.7   0.5     0.039        39      14      57 ..     136     181 ..     134     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00053
                EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEE CS
         AAA  1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakekakpsilfi 64
                +ll+G  G+GK+ l    a ++             +++ +e++g+++  + +  ++++++r + ++  + a + i+++
  CDO70780.1 12 LLLIGDSGVGKSCLLLRFADDTytesyistigvdfKIRTIELEGKTVKlQIWDTAGQERFRTITSSYYRGA-HGIIVV 88
                69*******************64444444444444677899999998866688899999999999988887.655444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.039
                 HHHHHHHHHTHEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTS CS
         AAA  14 lakavakelgvefleisgsell..skyvgesekkirelfkeakeka 57 
                 +ak  a +lg+ fle+s+++ +  ++ +  ++k+i++ + + +++a
  CDO70780.1 136 VAKEFADSLGIAFLETSAKNATnvEQAFLTMAKQIKDRMGSTSTNA 181
                 79999999***********999444488888888888776665555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.7e-05     0.057       2     151 ..      11     161 ..      10     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT..EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEG...GGHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg..keveivDlPGiYslsayseeekvardflleeepdvvvnvvda...tnlernL 95 
                 ++ l+G+  vGk+ l+ + ++ + + +  + + v+ k  +++l+g   +++i D  G   + ++++      + ++     vv +v d    tn+++ L
  CDO70780.1  11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGktVKLQIWDTAGQERFRTITSSYYRGAHGII-----VVYDVTDNdtfTNVKQWL 104
                 56899**************999999999999999999999988872245577888887777655444333222222.....444566643336888888 PP

                 HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-H.HHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N  96 yLtlqllelgvpvvlalnmideaekkgieidl.kkLsekLgvpvvktsakkkegiee 151
                 + + + +  gv+ +l+ n++d  +kk +e  + k+++++Lg+  ++tsak+ +++e+
  CDO70780.1 105 QEIDRYASEGVNKLLVGNKSDLTSKKVVEYSVaKEFADSLGIAFLETSAKNATNVEQ 161
                 88888899999****************999862679****************99987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.18      35      72 ..      11      49 ..       6      56 .. 0.78
   2 ?   -0.3   0.4      0.64   6.4e+02      28      83 ..     109     165 ..     102     185 .. 0.68
   3 ?   -0.1   0.3      0.56   5.6e+02      41      51 ..     180     190 ..     176     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekyls.ltinfsaq 72
                ++ll+G++G+GK++++ ++ +   +e+y+s + + f+ +
  CDO70780.1 11 KLLLIGDSGVGKSCLLLRFADDTYTESYIStIGVDFKIR 49
                689***************888777777654155666655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.64
       AAA_7  28 lllknkkpvllvGptG..tGKtviikdllkkldkekylsltinfsaqtsanqlqdiie 83 
                  + +++ + llvG++   t+K v+  ++ k++  +++ +++++ sa+   n  q ++ 
  CDO70780.1 109 RYASEGVNKLLVGNKSdlTSKKVVEYSVAKEFA-DSLGIAFLETSAKNATNVEQAFLT 165
                 566777788888887766888888888888888.777777777777666655555543 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.56
       AAA_7  41 ptGtGKtviik 51 
                 ++GtGK+++i+
  CDO70780.1 180 NAGTGKSSTIT 190
                 68*****9996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.12      25      39 ..      12      26 ..       2      27 .. 0.87
   2 ?   -0.4   0.3      0.98   9.7e+02      31      39 ..     181     189 ..     170     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
      AAA_29 25 tlltGpsGsGKSTll 39
                 ll+G+sG+GKS ll
  CDO70780.1 12 LLLIGDSGVGKSCLL 26
                79**********997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.98
      AAA_29  31 sGsGKSTll 39 
                  G+GKS+ +
  CDO70780.1 181 AGTGKSSTI 189
                 699**9865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.7e-05     0.067       8      37 ..      12      41 ..      11     177 .. 0.85
   2 ?   -1.1   0.1         2     2e+03      13      22 ..     180     189 ..     171     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.7e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee 37
                l+++G sG+GK+ ll r+++    e+++ +
  CDO70780.1 12 LLLIGDSGVGKSCLLLRFADDTYTESYIST 41
                689***************998755555554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
      AAA_22  13 esGtGKTtll 22 
                  +GtGK+ ++
  CDO70780.1 180 NAGTGKSSTI 189
                 58*****876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.7e-05     0.066       2      26 ..      12      36 ..      11     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.7e-05
                EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnre 26
                +lL+G++G+gKs l  r+a  + +e
  CDO70780.1 12 LLLIGDSGVGKSCLLLRFADDTYTE 36
                89****************9888333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   0.00016      0.15      14      67 ..      12      64 ..      10     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe 67
                + ++G++G GKS Ll  +a  +  te  i   g d+k +++e   k ++    +
  CDO70780.1 12 LLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELEGKTVKLQIWD 64
                679************99999876.788886667777776666666665554444 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.17       5      71 ..      10      67 ..       7      79 .. 0.68
   2 ?   -3.3   0.0       4.2   4.2e+03      75      93 ..     156     174 ..     135     177 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                EEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                f l+++G+sg+Gk+ l+  +  ++ +e+         ++  v++k ++ ++e++   ++l++ Dt g
  CDO70780.1 10 FKLLLIGDSGVGKSCLLLRFADDTYTESY-------ISTIGVDFKIRTIELEGK--TVKLQIWDTAG 67
                89**************9876554444442.......223455555566556555..44555667765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.2
                 SSSHHCCCHHHHHHHHHHH CS
      Septin  75 avdnskswepiveyideqf 93 
                 a + ++++ +++++i++++
  CDO70780.1 156 ATNVEQAFLTMAKQIKDRM 174
                 5566788888888887765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.27      37      60 ..      11      34 ..       4      57 .. 0.87
   2 ?   -2.1   0.0       2.2   2.2e+03      11      23 ..     132     144 ..     125     183 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
        TniB 37 nlllvGdsnnGKtmivekFarlhp 60
                +lll+Gds +GK+ ++ +Fa++  
  CDO70780.1 11 KLLLIGDSGVGKSCLLLRFADDTY 34
                689*****************8864 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
        TniB  11 igyprakeilerL 23 
                 ++y+ ake  ++L
  CDO70780.1 132 VEYSVAKEFADSL 144
                 5555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1518.93
//
Query:       CDO70781.1  [L=456]
Description: hypothetical protein BN946_scf184798.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-47  162.1   0.1    2.8e-47  161.7   0.1    1.0  1  Asp              Eukaryotic aspartyl protease
    7.3e-07   29.6   3.3    0.00018   21.8   3.3    2.3  1  TAXi_N           Xylanase inhibitor N-terminal
     0.0019   18.8   1.9      0.042   14.5   0.5    3.2  2  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
       0.12   12.9   0.5        1.4    9.6   0.1    2.9  3  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.1   6.3e-51   2.8e-47       2     304 ..      59     373 ..      58     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 6.3e-51
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgst 100
                 Y+ +i+iG   q+f v++DTGSsdlWV ss+c+ + +c   ++y ++   ++++  + +++ Y  g+vsG+++ +tv+vg   v  q f++at+  g  
  CDO70781.1  59 YLVSIDIG--GQDFMVLLDTGSSDLWVASSDCT-TGDCAGVRKYSKTP--SFSSLDTPFHLDYLMGNVSGTVGSETVTVGHFEVSSQVFANATNGLG-- 150
                 88899999..68********************9.89*******97665..567799**************************************999.. PP

                 HTTSSSSEEEE-S-GGGSCGG...SCCHHHHHHHT.TSSSSSEEEEEE-STTSSEEEEEESSEEGGGE..EEEEEEEEESS.....TSSTEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.....xxxxxxxxxxxxx RF
         Asp 101 flaakfdGiLGlgfkeisvee...atpvfdnlvsq.glikepvfsvylnreeeeggeivfGgvDesky..kGsltyvpvts.....kgywqielesvtv 188
                 +  + ++Gi+Gl+f++ ++       +v++nl+s+ +  ++  f++ l  +++++++ + G +D+++   +G+lty pv +     + yw++ l+s+tv
  CDO70781.1 151 LHGTGNSGIMGLSFPAEASIAdtaGRTVVENLLSAfNDSSRRFFAFKLG-RDQDSSSFTVGELDPAYAnsTGDLTYNPVFTsagasHDYWKLPLQSLTV 248
                 577789********98777665667788999777626678899*****9.778889999******875337********988999899*********** PP

                 TTEEE.......EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEE....TTEEEEEEGGGGEEEESSSTTSEE CS
                 xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 189 ggktv.......lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisfti....ggakitvpvselvlkeeeseesqC 276
                 +g+++       + +    a+lDtGT+l+ +pt+ v+++++ +g++ ++    + v C+       + +++     ++++t+ + ++  ke++ + + C
  CDO70781.1 249 NGTSFslskprvAGAPAPIAVLDTGTTLILGPTQDVARFWESVGGARQTA-RGWEVPCNR---AVVVGMVLgeskTQKEYTIDPADISWKESSVDGEWC 343
                 ***997544433333334466************************99999.99******8...3444444433447899**************999*** PP

                 EESEEECCT..SSSEEEEHHHHTTEEEEEE CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
         Asp 277 ilglvseee..gdlwiLGdvFlrsayvvfd 304
                 + gl+ +++  +  w+LGd+Flr++yv + 
  CDO70781.1 344 LGGLQGNNGvfSADWLLGDTFLRNVYVTHH 373
                 ****5555422678************9875 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   3.3     4e-08   0.00018       1     155 [.      59     179 ..      59     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4e-08
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkac.easssaksgsssstceyeisygadgssssGvlat 98 
                 Ylvsi+iG   q++++++DtGs+ +Wv                            c++  C+++ + s++++ +s +++ + ++  g    ++sG++++
  CDO70781.1  59 YLVSIDIGG--QDFMVLLDTGSSDLWVAS------------------------SDCTTGDCAGVrKYSKTPSFSSLDTPFHLDYLMG----NVSGTVGS 127
                 9999***97..6****************9........................5788889995545556666666666666666664....89****** PP

      TAXi_N  99 dtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGr.gklSlvsqlaskgsl 155
                 +t+t+     ++ +v++ vf+ +++ lg   +g +Gi+GL++ ++ S+++ ++++  +
  CDO70781.1 128 ETVTV-----GHFEVSSQVFANATNGLGLHGTGNSGIMGLSFpAEASIADTAGRT-VV 179
                 *****.....899***********99999999*********96678888777755.33 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.5   9.4e-06     0.042       1      90 []      61     164 ..      61     164 .. 0.65
   2 ?    1.6   0.0       0.1   4.6e+02       7      31 ..     262     287 ..     245     331 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.4e-06
  Asp_protease_2   1 vpvtinGkpvrfllDTGasttlispelaekl...glkvreseltvrvsgagg........evkarlvrldslklggltlknvpalvld.....lg 79 
                     v++ i+G+ +++llDTG+s + + ++  ++    g++++++  t ++s+++          + + +v  +++++g +++ ++ ++ +       g
      CDO70781.1  61 VSIDIGGQDFMVLLDTGSSDLWVASSDCTTGdcaGVRKYSK--TPSFSSLDTpfhldylmGNVSGTVGSETVTVGHFEVSSQVFANATnglglHG 153
                     67899***************999988885432225555554..4555555553333332223344455666888888888888777775655556 PP

  Asp_protease_2  80 eeidglLGmdf 90 
                     ++  g++G++f
      CDO70781.1 154 TGNSGIMGLSF 164
                     77788888876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.1
  Asp_protease_2   7 Gkpv.rfllDTGasttlispelaekl 31 
                     G p+  ++lDTG + +l +++ +++ 
      CDO70781.1 262 GAPApIAVLDTGTTLILGPTQDVARF 287
                     55554578999999999888887765 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00031       1.4       1      89 [.      61     164 ..      61     164 .. 0.61
   2 ?   -0.8   0.0      0.51   2.3e+03      12      25 ..     268     281 ..     257     315 .. 0.73
   3 ?   -3.6   0.0         4   1.8e+04      81      92 .]     356     367 ..     351     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00031
                      EEEEETTEEEEEEEETT-SS-EEEHHHHHHT...TGGGGEB..TT--............EE-TTSTT-EEEEEEEEEE.E.ETTEEEEEEEEEE CS
  gag-asp_proteas   1 vkvkingkpvkflvDTGAsstiiseelaerl...glsrkedkgkvev............ktangeveakrvrldsvkigg.ielrnvsavvleg 78 
                      v++ i g+++ +l+DTG s+  + +++ ++    g+++ +++ ++              ++++g+v  ++v++   ++ + + ++  + + l+g
       CDO70781.1  61 VSIDIGGQDFMVLLDTGSSDLWVASSDCTTGdcaGVRKYSKT-PSFSsldtpfhldylmGNVSGTVGSETVTVGHFEVSSqVFANATNGLGLHG 153
                      56889***************9998888775411233333322.222235666666666666666666666677766665413344445666666 PP

                      SSSSEEEEHHH CS
  gag-asp_proteas  79 elddlLLGldf 89 
                      + + +++Gl+f
       CDO70781.1 154 TGNSGIMGLSF 164
                      66777777776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.51
                      EEEETT-SS-EEEH CS
  gag-asp_proteas  12 flvDTGAsstiise 25 
                      +++DTG + ++ ++
       CDO70781.1 268 AVLDTGTTLILGPT 281
                      78999988766555 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4
                      SSEEEEHHHHHH CS
  gag-asp_proteas  81 ddlLLGldfLkr 92 
                      +d LLG  fL++
       CDO70781.1 356 ADWLLGDTFLRN 367
                      5779*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3210.25
//
Query:       CDO70782.1  [L=117]
Description: hypothetical protein BN946_scf184798.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0064   17.2   0.0     0.0092   16.7   0.0    1.2  1  zinc_ribbon_15  zinc-ribbon family


Domain annotation for each model (and alignments):
>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.1e-07    0.0092      14      51 ..      31      67 ..      25      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.1e-07
  zinc_ribbon_15 14 lvkkkkvlklffipvfkwkkkkpylacskCkslleask 51
                     vk++++++l+f+p++++++ + +  c+ C+  ++ ++
      CDO70782.1 31 RVKSRTWFELCFVPLIPMSS-EHLWLCTICQWSVPLQQ 67
                    58999***************.999******98887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 898.09
//
Query:       CDO70783.1  [L=778]
Description: hypothetical protein BN946_scf184798.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   28.7   4.5    1.9e-06   27.8   4.5    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   4.5   1.1e-10   1.9e-06       2      31 ..      39      77 ..      38      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.1e-10
                S-HHHHHCT---ST.SSSS........-HHHHHCTHHHC CS
     Zn_clus  2 aCdnCrkkKvKCda.kkPa........CsnCkklnleCt 31
                aC  Cr ++vKCd  + P+        CsnC +++l+C+
  CDO70783.1 39 ACGACRMRRVKCDLkDLPTlasgqhppCSNCSERGLNCV 77
                9*************9555555555666***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4993.33
//
Query:       CDO70784.1  [L=210]
Description: hypothetical protein BN946_scf184798.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-41  140.6   0.0    8.3e-41  140.3   0.0    1.0  1  Nop16         Ribosome biogenesis protein Nop16
  ------ inclusion threshold ------
      0.076   12.4   0.0      0.099   12.0   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   9.3e-45   8.3e-41      47     209 ..      18     200 ..      15     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 9.3e-45
       Nop16  47 YkrLGLvaklnapa.Ggvekklskanekeekekkklee...eesdekklskgearieRDeeGkivkviegkkkkeneledpleeleedeekeeeee... 138
                 Y++LGL a+ln+   Gg+e+kls++  +ee+  ++++    + s+++ l+kg ++i+RD++G+iv+v+ + +++e++  + +ee+ +d  + +e++   
  CDO70784.1  18 YEALGLSATLNPIDsGGTERKLSSQPAHEEQPASSSAPstsKPSAANGLPKGYGKIIRDADGNIVDVVLN-DEDEEQDAEAMEEMLDDVPDPTEDDqaa 115
                 9**********9999*********999998887777667778889999*********************9.3333333333343333333333333456 PP

       Nop16 139 ..............kkkktevvkeLekeaarekakkerhlsereeewlerLvekhGdDyeaMarDrkLNpmqqtegdlkrrikkw 209
                               +++ t+vv++Le+ ++++  + +r  s++e+ +l+rLv+k+G+D+eaMa+D+kLN++q+t+g+l+r+i+k+
  CDO70784.1 116 gwvglgsdprkhtpESAGTQVVQALEHLSETRGGRVPRFSSKGEQAVLRRLVAKYGEDVEAMAKDHKLNVDQRTAGELRRAIRKA 200
                 7*************999******************************************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05     0.099     129     221 ..      58     140 ..      41     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.1e-05
                   -TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGH CS
  Peripla_BP_1 129 esaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlkikeevdsfiesvvvy 221
                   + +++a+   +G+   +++a  +  +v+v l ++d e+ aea++e+l   P+        d  a+G + +l    r  ++e    + + v+++
    CDO70784.1  58 SKPSAANGLPKGYGKIIRDA--DGNIVDVVLNDEDEEQDAEAMEEMLDDVPD-----PTEDDQAAG-WVGLGSDPRKHTPESA--GTQVVQAL 140
                   55667777789999999999..889*************************88.....567777777.8888888887777776..33344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1525.76
//
Query:       CDO70785.1  [L=283]
Description: hypothetical protein BN946_scf184798.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-07   29.0   0.0    3.8e-06   27.1   0.0    2.0  3  HAD_2           Haloacid dehalogenase-like hydrolase
    0.00081   19.4   0.0     0.0024   17.9   0.0    1.7  2  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.013   15.8   0.0       0.21   11.8   0.0    2.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
       0.04   14.0   0.0       0.22   11.7   0.0    2.1  3  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.3     1e+04     149     162 ..     146     159 ..     143     159 .. 0.84
   2 !   27.1   0.0   8.4e-10   3.8e-06     119     178 .]     189     248 ..     186     248 .. 0.95
   3 ?   -2.6   0.0       1.1   4.9e+03      88     100 ..     254     266 ..     250     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
       HAD_2 149 klkkeeviyvGDsp 162
                 +++k+e+ ++GDsp
  CDO70785.1 146 NFSKSEADIIGDSP 159
                 678999999**996 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 8.4e-10
       HAD_2 119 esyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                   +Fd  + s++ + +KP+p +++ a+ + ++k+ e+++  D    ++aa+++g+++i v
  CDO70785.1 189 RALFDDFCDSSTLGMRKPEPGIYLLACARNGIKPTEAVFLDDLGMNLKAAQALGMETIHV 248
                 6789*****************************************************976 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
       HAD_2  88 LeeLkeagyklgi 100
                 Le Lk+ + klgi
  CDO70785.1 254 LEALKKLEAKLGI 266
                 7788888888888 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.89     4e+03      19      31 ..     147     159 ..     134     160 .. 0.72
   2 !   17.9   0.0   5.5e-07    0.0024       2      54 ..     203     254 ..     202     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.89
                     --GGGEEEEES-T CS
  Hydrolase_like  19 sdpeevlmiGDrl 31 
                       ++e  +iGD++
      CDO70785.1 147 FSKSEADIIGDSP 159
                     4566777899986 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 5.5e-07
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtr 54 
                     ++KPep++y  a +++g++p e ++  D     +++A++ G++++ V  G + 
      CDO70785.1 203 MRKPEPGIYLLACARNGIKPTEAVFLDDL-GMNLKAAQALGMETIHVPVGGSL 254
                     69***********************9887.*****************988654 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.21     121     210 .]     123     242 ..       6     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                 TTHHHHHHHHHHTTE.EEEEEESSEH...................HHHHHHHHHTT..........GGGESEEEEHHCESSTTTSHHHHHHHHHHHTST CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxx...................xxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 121 peaaeavasLkaagi.evvlltgdnp...................etaeraanqlG..........ddyfdaviasdietvakpspegkvaaireLqgk 189
                 + ++ea+++++aag  +v+ lt++++                    t+++ ++ lG          +  fd   +s++ +  kp+p +++ a+ + ++k
  CDO70785.1 123 ERVVEAIRRIRAAGRwRVIALTNNFSkseadiigdsppppekypnFTVQSELEFLGwvegpvpprlRALFDDFCDSSTLGMRKPEPGIYLLACARNGIK 221
                 55669999999997779999998888888888888888888888777777788888888899888778889999999999******************* PP

                 GGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 190 peevamVGDgvnDaaalaaAg 210
                 p e ++ +D    ++a++a g
  CDO70785.1 222 PTEAVFLDDLGMNLKAAQALG 242
                 *********999999998865 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.76   3.4e+03       1      11 [.       9      19 ..       9      27 .. 0.85
   2 ?   11.7   0.0   4.8e-05      0.22      17      47 ..     123     154 ..     109     157 .. 0.81
   3 ?   -2.9   0.0       1.7   7.5e+03      21      58 ..     255     268 ..     248     271 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.76
                 EEEESTTTSEE CS
  Hydrolase_6  1 flfDidGvLwr 11
                 ++fDi Gv+ r
   CDO70785.1  9 VIFDIGGVVCR 19
                 68******987 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.8e-05
                  TTHHHHHHHHHHTT.-EEEEEE---SS-HHHH CS
  Hydrolase_6  17 pgaaealnalraag.kpvvllTNnsskseeey 47 
                  + ++ea++++raag  +v+ lTNn skse ++
   CDO70785.1 123 ERVVEAIRRIRAAGrWRVIALTNNFSKSEADI 154
                  5699*********868***********99876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.7
                  HHHHHHHHTT-EEEEEE---SS-HHHHHHHH.HHTT--- CS
  Hydrolase_6  21 ealnalraagkpvvllTNnsskseeeyakkl.eklgvdi 58 
                  ea                         +kkl  klg+d+
   CDO70785.1 255 EA-------------------------LKKLeAKLGIDL 268
                  33.........................455544455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1903.08
//
Query:       CDO70786.1  [L=179]
Description: hypothetical protein BN946_scf184798.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-13   47.8   0.0    4.6e-06   26.1   0.0    2.4  2  EF-hand_6  EF-hand domain
    6.1e-12   44.2   0.0    9.8e-06   24.8   0.0    2.3  2  EF-hand_1  EF hand
    2.2e-10   39.6   0.0    1.7e-05   24.1   0.0    2.3  2  EF-hand_5  EF hand
    5.4e-09   36.4   0.0     0.0005   20.5   0.0    2.2  2  EF-hand_7  EF-hand domain pair
      6e-06   26.0   0.0       0.22   11.4   0.0    3.2  3  EF-hand_8  EF-hand domain pair
     0.0011   19.2   0.0       0.61   10.5   0.0    2.3  2  EF-hand_9  EF-hand domain
  ------ inclusion threshold ------
      0.054   13.4   0.0       0.31   10.9   0.0    1.9  2  Caleosin   Caleosin related protein


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     3e-07   0.00077       2      26 ..      59      83 ..      58      87 .. 0.91
   2 !   26.1   0.0   1.8e-09   4.6e-06       2      31 .]     101     129 ..     100     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                l++ F + D+d++G i+  El++al
  CDO70786.1 59 LWQWFSAVDTDRSGAISVTELQAAL 83
                7789*******************99 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.8e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 ++ +F++fD+d++G+i  +El +alr ++g
  CDO70786.1 101 WQNVFRHFDRDRSGSIEGSELASALR-SFG 129
                 789***********************.766 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.9e-07    0.0025       4      26 ..      61      83 ..      58      85 .. 0.89
   2 !   24.8   0.0   3.8e-09   9.8e-06       1      28 [.     100     127 ..     100     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.9e-07
                HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkell 26
                + F+ +D+D++G I+  E++++l
  CDO70786.1 61 QWFSAVDTDRSGAISVTELQAAL 83
                679*****************998 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 3.8e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +++++Fr+fD+D++G I+ +E+ ++l++
  CDO70786.1 100 DWQNVFRHFDRDRSGSIEGSELASALRS 127
                 5899*********************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.5e-09   1.7e-05       4      24 ..      62      83 ..      61      84 .. 0.90
   2 !   13.2   0.0   1.8e-05     0.046       4      22 ..     104     122 ..     102     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6.5e-09
                HHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt.l 24
                +F+a+D++++G Is+ EL++ l
  CDO70786.1 62 WFSAVDTDRSGAISVTELQAaL 83
                9*****************9855 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.8e-05
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+ +D +++G I  +EL 
  CDO70786.1 104 VFRHFDRDRSGSIEGSELA 122
                 7****************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.3e-05     0.058      45      69 ..      58      82 ..      45      84 .. 0.78
   2 !   20.5   0.0   1.9e-07    0.0005       3      33 ..     100     130 ..      98     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
   EF-hand_7 45 elellfkefDtdkdGvisfdEFlkl 69
                +l ++f  +Dtd++G is +E++++
  CDO70786.1 58 QLWQWFSAVDTDRSGAISVTELQAA 82
                5567888888888888888888775 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.9e-07
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifq 33 
                 + + +F+ +D+d++g+++ +el ++lr++  
  CDO70786.1 100 DWQNVFRHFDRDRSGSIEGSELASALRSFGY 130
                 56789**********************8754 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.8e-05      0.22      32      48 ..      63      79 ..      63      85 .. 0.88
   2 !   10.4   0.0   0.00017      0.44      29      44 ..     102     117 ..      99     127 .. 0.81
   3 ?   -0.8   0.0      0.55   1.4e+03       5      16 ..     158     169 ..     157     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
   EF-hand_8 32 frefDtdgdGkisfeEF 48
                f+++Dtd++G+is +E 
  CDO70786.1 63 FSAVDTDRSGAISVTEL 79
                899***********996 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00017
   EF-hand_8  29 dilfrefDtdgdGkis 44 
                 + +fr+fD+d++G i 
  CDO70786.1 102 QNVFRHFDRDRSGSIE 117
                 789**********996 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.55
   EF-hand_8   5 Itreelrrilri 16 
                 It++ ++r+  +
  CDO70786.1 158 ITFDRFVRACVA 169
                 99****998744 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0035       9.1       4      24 ..      63      83 ..      61      86 .. 0.88
   2 !   10.5   0.0   0.00024      0.61       2      36 ..     103     138 ..     102     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
   EF-hand_9  4 FevcDtqktGrVpvsrlidyL 24
                F++ Dt++ G + v++l + L
  CDO70786.1 63 FSAVDTDRSGAISVTELQAAL 83
                9**************997765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaq.dpeese 36 
                  vF+ +D+++ G +  s+l + Lr  + + +p+ + 
  CDO70786.1 103 NVFRHFDRDRSGSIEGSELASALRSFGYNlSPSLLS 138
                 58***********************99985554444 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.16   4.1e+02      97     141 ..      61     104 ..      56     106 .. 0.73
   2 ?   10.9   0.0   0.00012      0.31      10      44 ..     105     139 ..      96     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.16
    Caleosin  97 eifskyakekkdaltlkevlellkgqrealDlfgwlaallewlal 141
                 + fs  ++++++a++++e+++ l  + + + ++g    + +w+ +
  CDO70786.1  61 QWFSAVDTDRSGAISVTELQAALV-NGNWTKFAGLWKYIQDWQNV 104
                 578889999999999999887654.55666777777777777765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
    Caleosin  10 vaFfDrdkdGiiypldtyrgfralgfnvllsllaa 44 
                 + +fDrd+ G i  ++  +++r++g+n+  sll+ 
  CDO70786.1 105 FRHFDRDRSGSIEGSELASALRSFGYNLSPSLLSL 139
                 678*************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1239.43
//
Query:       CDO70787.1  [L=436]
Description: hypothetical protein BN946_scf184798.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-43  148.5   0.0    2.7e-43  148.1   0.0    1.0  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   1.5e-47   2.7e-43      19     313 ..      90     435 ..      74     436 .] 0.80

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.5e-47
                  STEEEEHHHHHHHHHHHHHHHHHT...TS.STT-E..EEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-H....HHHHHHHHHHTESEEEETCTCCC CS
  AMP-binding  19 egqtlTYreldervnrlAagLrsl...Gv.kkgdr..VaillpnspewvvallailkaGavvvplnptlta....eelayiledseakvliatvdsel 106
                    ++ T+ e+d+r ++++++L +l   G+ + gd   V+i+++nsp w v++la++ ++  +  +n ++ +    +  ++i++++e +v++     + 
   CDO70787.1  90 YFEWQTWPEVDARRRAVGSALHKLfqsGAlGGGDLptVGIWSKNSPNWQVIDLALQAYSKYPRGMNRDSERaapfAIPEFIMNHAELTVVF--ATPDH 185
                  46899****************9644445556666566******************************777633324459************..66666 PP

                  HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTT.S...........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH CS
  AMP-binding 107 leklleaaakleavklvivldadellkeeelkeeeeseeka.e...........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk 192
                  +++ll+ a+k ++ k ++ +d   +++++ l +  e+ +++ +           +  ++ ++++d +a+i+YTSGTTG+PKGV+++h++++++v+ + 
   CDO70787.1 186 IPALLKLAPKAPVLKMIVSMDPLTAETKSVLSAWGETVNVQiKelseleefgraNLIDVIPATSDRIATICYTSGTTGQPKGVVITHGAMAQAVYGY- 282
                  9999999999888888888887777777777777766666651678899999*944456689**********************************6. PP

                  HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHH............HHCCCHHCHHH CS
  AMP-binding 193 letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleal............lesgalkaakk 278
                    ++f+l+++ ++ls+lplahi++  + +l++++ G++++++ +d+     +ll++++ l+++++++vPrvl+++            l          
   CDO70787.1 283 -LHQFSLDNETTMLSFLPLAHIYER-VMELITISMGGQIGYACGDPL----MLLDDLRILRPHFMPSVPRVLNRIyqsamsagsapgL---------- 364
                  .345889899**************7.999999*********998877....479*********************6666443333331.......... PP

                  HC....................................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEE CS
  AMP-binding 279 ak....................................dlss.lrlvllggeplspellrffralfgeevle 313
                   k                                     l++ +r++ +g +p+s+++++f++  + ++++e
   CDO70787.1 365 -KgtlfrkavatklhnlrakgefhhalydrlvfrkihnVLGGrMRFISTGSAPISANVMDFLKIGLLCHIIE 435
                  .022333334444666777777777777777777777777777999999*************9988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2887.91
//
Query:       CDO70788.1  [L=253]
Description: hypothetical protein BN946_scf184798.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-28   98.6   0.1    4.2e-28   98.1   0.1    1.2  1  AMP-binding    AMP-binding enzyme
      8e-06   26.7   1.0    2.4e-05   25.2   1.0    1.9  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   4.7e-32   4.2e-28     317     422 ..       1     107 [.       1     108 [. 0.94

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 4.7e-32
                  EGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE...EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEE CS
  AMP-binding 317 lTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgee...GellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyle 411
                  +TE++g ++  +  +d  + g+vG plp++e+k++D  ++++++d+++   Ge+++rg + + +Y+k+p++tae++d e++w +TGD+g ld   +l+
   CDO70788.1   1 MTENCGSFV-RTWTNDPYSSGTVGVPLPNAELKLIDVPEMGYFADDKPyprGEICMRGTQRFTCYYKDPKKTAETID-EEGWIHTGDVGALDNALRLK 96 
                  8*******8.5556777889************************999999**************************9.657***********999*** PP

                  EEEECCCEEEE CS
  AMP-binding 412 ivgRkkdlikl 422
                  i++R k+++kl
   CDO70788.1  97 IIDRVKNIMKL 107
                  **********8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   1.0   2.7e-09   2.4e-05       2      52 ..     118     162 ..     117     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.7e-09
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk 52 
                    vE++++ +p V++++V+G++ +   ++l+a+Vv+++ +    + L+++v+ 
     CDO70788.1 118 VENVYSGSPIVSQVYVHGDSLQ---SYLIAVVVPDPVQ---FAVLVSRVKG 162
                    9*********************...*********4323...2677777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1937.31
//
Query:       CDO70789.1  [L=509]
Description: hypothetical protein BN946_scf184798.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28  100.1  30.0    1.2e-28  100.1  30.0    1.6  1  MFS_1     Major Facilitator Superfamily
    5.8e-06   25.4   0.5    5.8e-06   25.4   0.5    2.1  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1  30.0   1.3e-32   1.2e-28       7     353 .]      65     460 ..      59     460 .. 0.77

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.3e-32
       MFS_1   7 lsalarsilgpalplalaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +  +a++ ++p +   ++++l+++++        gl+ + +a++++v+++ ++rlsd +Grr+v+l+g+++ +l++l+l + s+    ++++r+l Gl+
  CDO70789.1  65 VDPIAFTQIFPYVN-EMMDHLHLTEDRskigfySGLVESSFAIAQVVSIYQWARLSDLIGRRPVVLFGIFGIGLSTLFLGV-STTLsGVILARCLGGLF 161
                 56677777888898.899**99999888866666778899***********************************555555.555559*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...............Wravfyilaivsllafv..lfllllpeepperk 180
                  ++ ++++++++ +++  ++++ a+ l+++++ lGai+gpl ggll+  +                +   f+ + +++++af     + ++++e +++ 
  CDO70789.1 162 -SGNIAVIHSVLGEITDSTNQAIAFPLYGLCWPLGAIIGPLMGGLLSNPAPkfpqwfdtpffrhypY---FLPCFAAAMIAFAgsAYGYFYMRESHPNL 256
                 .8*********************************************44447*99999999765432...22222222222224355666777777777 PP

       MFS_1 181 rkspkeee......kgtgpaplvp.awkallkdpvlwillialllfffgfsg......lltllply...lqevlglsglllaglllallalvgail.al 262
                 r+ +ke         g +++p  p   k+ll+ pv+     al+l ++g+s+      +++ l+ y    q  l ++ + ++g++l+++++++++l  +
  CDO70789.1 257 RSGKKESIpmterrDGAFEKPSEPaTVKHLLAIPVVR----ALCLSGAGLSFiatgfdVTFVLFCYtsiQQGGLAFN-ATQIGYALSISGFISIFLqLF 350
                 7777777789987733333333336689999999663....333333333333333464444444422256666677.8*****************666 PP

       MFS_1 263 lagrlsdrlgrrrrlllallllllaalglallavt.................ssavllllvlvl.iGfglgfvfpsllalasdlapp.eeagtasglfn 342
                 +  +l++r+ + r+ ++ ++l  +++++l  l++                  +  v+++++++l i+ +++++f+ ++ l+ d+ap+    g  +g+++
  CDO70789.1 351 CMPFLLRRFDHARMYNFCMGLWPFCFVLLPGLNFLarwgavdalagelapavQAVVWVAIAVILaISRTAALAFSVSMILVKDSAPNpASLGVTNGIAQ 449
                 666777****999999999988888888888888899999999999999997777777776666355599999***********9654899******** PP

       MFS_1 343 tagslggalgp 353
                 +a +l+++++p
  CDO70789.1 450 FAMCLSRSFSP 460
                 *******9987 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.5   6.4e-10   5.8e-06      44     158 ..      93     203 ..      30     252 .. 0.87
   2 ?   -3.0   1.6      0.28   2.5e+03     305     333 ..     350     378 ..     326     490 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.4e-10
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                    +sgl+ s+f + ++++ +    l+d +GR+++ l++++    +++  ++++   ++  +i++R l G++ G + v+ ++ ++Ei+  +   +   l
  CDO70789.1  93 IGFYSGLVESSFAIAQVVSIYQWARLSDLIGRRPVVLFGIFGIGLSTLFLGVST---TLSGVILARCLGGLFSGNIAVIHSV-LGEITDSTNQAIAFPL 187
                 34799*************************************************...9******************999987.6999999999999999 PP

                 HHHHHHHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifg 158
                 y l++ +G +++  +g
  CDO70789.1 188 YGLCWPLGAIIGPLMG 203
                 9999999999987666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.28
                 HHHHHHHHHS-SHHHHHHHHHHHHHHHHH CS
    Sugar_tr 305 fvaiflvdrfGRRtllllGaagmaicfvi 333
                 f+  fl +rf   +++ +++    +cfv+
  CDO70789.1 350 FCMPFLLRRFDHARMYNFCMGLWPFCFVL 378
                 33334444444444444443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3596.27
//
Query:       CDO70790.1  [L=223]
Description: hypothetical protein BN946_scf184798.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1585.51
//
Query:       CDO70791.1  [L=154]
Description: hypothetical protein BN946_scf184798.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-23   83.2   1.5    2.7e-23   82.7   1.5    1.2  1  PIG-Y     Phosphatidylinositol N-acetylglucosaminyltransferas


Domain annotation for each model (and alignments):
>> PIG-Y  Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   1.5   1.5e-27   2.7e-23       1      70 []      61     153 ..      61     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1.5e-27
       PIG-Y   1 Gyallltsvllfivgmyavlfskllr.lgeaplsppv...........................laddryYcylvpllipvtlvfvianWvGlKfFrh 70 
                 Gyal+++svl+++vg+yav+fs++l  +g+     +v                           la+dr+Y+ylv++lip+++ fvianWvG++++++
  CDO70791.1  61 GYALAACSVLFLLVGSYAVFFSAFLPrTGI-----WVrtaaalriafrrvdetgasacsqaldvLAEDRHYKYLVIMLIPAGTGFVIANWVGWQYYMN 153
                 9***********************955888.....223334466677777788888888888999999****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1079.12
//
Query:       CDO70792.1  [L=387]
Description: hypothetical protein BN946_scf184798.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-19   68.0   0.0    1.4e-18   67.2   0.0    1.4  1  CLTH          CTLH/CRA C-terminal to LisH motif domain
    1.7e-07   31.1   0.2    2.9e-07   30.4   0.2    1.4  1  zf-RING_UBOX  RING-type zinc-finger
    0.00075   18.9   1.4    0.00082   18.8   0.0    1.7  2  Rtf2          Rtf2 RING-finger
     0.0045   16.9   0.2      0.008   16.1   0.2    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0076   16.6   0.3      0.013   15.8   0.3    1.4  1  zf-RING_2     Ring finger domain
  ------ inclusion threshold ------
      0.059   13.2   1.4       0.12   12.2   1.4    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
       0.14   12.1   0.8       0.25   11.3   0.8    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
       0.21   11.5   0.2        0.4   10.6   0.2    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   6.2e-22   1.4e-18       2     136 ..     148     281 ..     147     285 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 6.2e-22
        CLTH   2 ikerqkIiklilegdlseaiewinenkpellesnsnLeFkLkllqfielirgktkdieealeyarenlefendehlkelekamsLLafsdpeskelssp 100
                 +  +++I  ++++g++ +a++w+  n+  l+++ s+L+F+L++ +++  + + + di +a++yar+n+  ++ +h +e+ ++m +  + + +  + +sp
  CDO70792.1 148 FMTLHRIMLSLRNGNVIPALQWAHYNDDFLEDRPSSLKFHLHRFEYLRQLLSPHADIAAAINYARTNFPDFYPHHGAEIGRLMNCVTYLPLSR-FMKSP 245
                 66789*****************************************9887766699************666666****************998.999** PP

        CLTH 101 lknlldpsrrekvakefnsailkllglskespLeil 136
                 +++l +ps  +++ ++f  +++++lg+s+++pL ++
  CDO70792.1 246 YADLANPSIHSELERMFATEYCASLGMSRQAPLRVI 281
                 *********************************987 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.2   1.3e-10   2.9e-07       1      39 []     331     371 ..     331     371 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.3e-10
  zf-RING_UBOX   1 CpIClelft..dP.lvlpCGHtFCreClwelskslegafkCP 39 
                   Cp+++e+ t  +P ++++CGH++ +e l ++ ++ +g++kCP
    CDO70792.1 331 CPVSKEQSTeaNPpMMMTCGHVITKESL-QKLSKPGGRVKCP 371
                   ******999997776657**********.89**********9 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       0.8   1.8e+03     233     254 ..      60      81 ..      18      91 .. 0.60
   2 !   18.8   0.0   3.7e-07   0.00082     109     158 ..     323     375 ..     296     385 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.8
        Rtf2 233 kkekkkrslaekneksevyksl 254
                  k+ ++++++ +  ++evy++l
  CDO70792.1  60 AKTVEEKKKEVDDRQKEVYNAL 81 
                 2233333334444444555444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.7e-07
        Rtf2 109 dtkeapfiCpltglemngktkfvalrkCGcVfsekalkevk....sevClvCgk 158
                 +  ++ f+Cp+++ +   +    ++++CG+V+ ++ l+++       +C+ C  
  CDO70792.1 323 NRYHSVFACPVSKEQST-EANPPMMMTCGHVITKESLQKLSkpggRVKCPYCPM 375
                 556789*****987755.555677889*************66888888****65 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   3.5e-06     0.008       2      42 ..     331     373 ..     330     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.5e-06
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll..ekeavCpiC 42 
                 C++  e+ ++  ++++++CgH++ ++ l+kl+  + +++Cp C
  CDO70792.1 331 CPVSKEQSTEANPPMMMTCGHVITKESLQKLSkpGGRVKCPYC 373
                 5555566667778*********************9******99 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   5.7e-06     0.013       3      43 ..     331     373 ..     329     374 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.7e-06
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst..CPlC 43 
                 Cp+  e+ ++a+ ++ + CgHv+ +e l+++ ++  +  CP+C
  CDO70792.1 331 CPVSKEQSTEANPPMMMTCGHVITKESLQKLSKPGGRvkCPYC 373
                 777766666667777778*****************99****** PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.4   5.3e-05      0.12      13      56 ..     330     373 ..     323     374 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.3e-05
                 B-TTTSSB-S..SEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse  13 kCPltlqpfe..ePvtskkCpHvFEreaIlelikrkktvkCPvagC 56 
                  CP+++++ +  +P    +C Hv  +e++++l k   +vkCP   C
  CDO70792.1 330 ACPVSKEQSTeaNPPMMMTCGHVITKESLQKLSKPGGRVKCPY--C 373
                 799999876522699999************************8..6 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   0.00011      0.25       9      41 .]     339     373 ..     331     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                 SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   9 kepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 +e+n  ++++C+H + ++ ++k+ k  + vkCP C
  CDO70792.1 339 TEANppMMMTCGHVITKESLQKLSKPGGRVKCPYC 373
                 3333457***************************9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00018       0.4       8      39 ..     341     376 ..     331     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
  Prok-RING_4   8 ekkailepCgHlvCkeCfdskdls....sCPlCqrr 39 
                   + +++  CgH++ ke +++         CP C  +
   CDO70792.1 341 ANPPMMMTCGHVITKESLQKLSKPggrvKCPYCPME 376
                  56678899***********9966668899****766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      830  (0.0462937); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2868.37
//
Query:       CDO70793.1  [L=119]
Description: hypothetical protein BN946_scf184798.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 851.74
//
Query:       CDO70794.1  [L=297]
Description: hypothetical protein BN946_scf184798.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-29  100.1   0.1    1.2e-28   99.2   0.1    1.4  1  Pirin     Pirin
    7.8e-28   96.9   0.0    2.3e-27   95.4   0.0    1.7  2  Pirin_C   Pirin C-terminal cupin domain
    0.00025   20.7   0.6      0.075   12.8   0.6    2.7  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.1     2e-32   1.2e-28       3     108 .]      23     120 ..      21     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 2e-32
                 EECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS..SS CS
       Pirin   3 rvrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee..ee 99 
                 +vrr++g+ ++l+++ pFl+ld+f+  ++   +    gagfp+hphrg +tvty+leGe  h+Ds+G+kg+i++G+vqwm Ag+Gi+h+Em++      
  CDO70794.1  23 KVRRSIGS-PQLRNLTPFLILDHFH--TP---A----GAGFPDHPHRGQATVTYMLEGESLHEDSAGHKGKIKAGGVQWMIAGRGIIHAEMPQYGdnLP 111
                 78899999.99*************9..23...2....58*****************************************************9874456 PP

                 -EEEEEEEE CS
       Pirin 100 sleglqlWv 108
                 + +g+qlW+
  CDO70794.1 112 EPRGMQLWI 120
                 789*****8 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.6   3.6e+03      17      36 ..      58      77 ..      44     100 .. 0.60
   2 !   95.4   0.0   3.8e-31   2.3e-27       7     104 .]     183     283 ..     177     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.6
                -TT-EEEEEEEES-EEESST CS
     Pirin_C 17 pegleaavyvleGelevgge 36
                  g  ++ y+leGe   +++
  CDO70794.1 58 HRGQATVTYMLEGESLHEDS 77
                55666677888887644443 PP

  == domain 2  score: 95.4 bits;  conditional E-value: 3.8e-31
                 -TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-...SSSEEEEE--SS-EEEEEEEE----S--EEETTEEESSHHHHHHHHHHHHTT- CS
     Pirin_C   7 eagaelelplpegleaavyvleGelevggerseieeeqlavlg...dgdslvvkaeekgarvlLlaGePlgepvvqyGpfVmntkeeieqafedyregr 102
                 ++  ++++++p g++a++y+l+G+l+vg++ ++ e+ +++vl+   d++ ++v+a+e++++++L+aGePl++pvvqyGpfVm +++ei +++ dy+ gr
  CDO70794.1 183 SKPGTVFQDIPTGWTAFIYILKGQLRVGSDSTPHEPYHTLVLSaapDEGGVEVTATEDNTEFVLIAGEPLNQPVVQYGPFVMTSRDEIHKTIVDYQYGR 281
                 556678899*************************************9***************************************************9 PP

                 TT CS
     Pirin_C 103 fg 104
                 +g
  CDO70794.1 282 NG 283
                 85 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.6   1.3e-05     0.075       3      31 ..      45      73 ..      43      97 .. 0.79
   2 !    5.1   0.0    0.0032        19      18      33 ..     196     210 ..     183     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                EEEETTEEEEEECSSSEEEEEEEEESEEE CS
     Cupin_2  3 velppGesapshrHpgedeffyVleGege 31
                ++ p G+ +p h H+g+  + y leGe  
  CDO70794.1 45 FHTPAGAGFPDHPHRGQATVTYMLEGESL 73
                6778999*******************954 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0032
                 SEEEEEEEEESEEEEE CS
     Cupin_2  18 gedeffyVleGegelt 33 
                 ++ +f+y+l+G++++ 
  CDO70794.1 196 WT-AFIYILKGQLRVG 210
                 44.9*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2121.23
//
Query:       CDO70795.1  [L=553]
Description: hypothetical protein BN946_scf184798.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-126  422.1  40.7     3e-126  421.8  40.7    1.0  1  AA_permease    Amino acid permease
      9e-33  113.7  42.3    1.5e-32  113.0  42.3    1.3  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8  40.7  3.3e-130    3e-126       2     472 ..      46     509 ..      45     512 .. 0.98

  Alignments for each domain:
  == domain 1  score: 421.8 bits;  conditional E-value: 3.3e-130
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  + +ialgg++Gtgl++g+g +l  +Gplg++l+y ++g+v ++vm++lge++ + p+  gf  ya+rf++p++Gf+ G+nyl+ +++v ++ ++aa+ 
   CDO70795.1  46 ISMIALGGAVGTGLIIGSGTALVRGGPLGIFLGYSFVGIVCYMVMVALGEMSAYLPHKKGFPGYATRFVDPAFGFALGWNYLLKYLIVTPNNINAAGV 143
                  68************************************************************************************************ PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  +iq+w  +++++ + v+ ++f+++++++nl+g++v+ge ef++++ik+i++i+++++gii+  gg+p++++ gfr++ ++++ + ++l ++  +    
   CDO70795.1 144 VIQYW--TQKVH-IAVWMIIFIAFIFFVNLLGIRVFGELEFWFSSIKVISLIGLLLMGIIIDLGGNPKHDRiGFRYWDHPYGPMGKYLQNQVHNDHLA 238
                  *****..*****.******************************************************************************8899999 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa....aspfvifikesgvsvlap 290
                   f++f s +  ++fa+ G+el++++ gE++ P+k+iP+ai+++++ri++fYv+++++i+l+vp +d +l+ +  s     aspfv++++  g++vl++
   CDO70795.1 239 IFLGFWSTLTNALFAYIGTELIGVTVGEAQAPRKNIPIAIRRTFFRILVFYVGGVFVISLVVPSTDQNLFVANKSKpgaaASPFVVATTLVGIKVLNH 336
                  *********************************************************************997777689******************** PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  +ina+il+ +ls+ans ly+++R+ly la +g aP+++++v++ gvP++a++l++++  l++l+ s++++  +vf ++++++   g i+w++i++s++
   CDO70795.1 337 VINAAILLFVLSAANSDLYIGTRTLYGLAIQGQAPRIFARVNRMGVPYMALFLCTLFCGLVFLNVSSSSS--KVFGWFVNLVSTFGAITWMCICYSHI 432
                  **********************************************************************..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  rf+kalk+qg s + l++ka+++p+g++++l++  ii+++ ++  +++       +   +f+ +y++++ f++++vg+k++++ 
   CDO70795.1 433 RFMKALKAQGLSRDALPYKAPFQPWGSWFALISTAIITTFKGFDTFIP-------FTKDTFVTSYIGIPAFVLFYVGYKVYYRS 509
                  ************************************************.......77778*********************986 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0  42.3   1.7e-36   1.5e-32       2     405 ..      42     480 ..      41     501 .. 0.80

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.7e-36
  AA_permease_2   2 sllsafalvigsvigsgifvkn..laas..ggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvla 93 
                    s ++  ++++g ++g+g ++ +  +     ggp+ i+ +  +v+i++++v+ ++ E+s+ lp+++G  +y+ ++  + ++f  +w +++ y++v++
     CDO70795.1  42 SARQISMIALGGAVGTGLIIGSgtA--LvrGGPLGIFLGYSFVGIVCYMVMVALGEMSAYLPHKKGFPGYATRFVDPAFGFALGWNYLLKYLIVTP 135
                    66788899***********998533..346999999999999999999*********999*********************************997 PP

  AA_permease_2  94 silsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.............. 175
                      + +a+  +++ + ++     +++ + +i+++++++++n++gi+  + + ++   +k+ + li l++ g+i+ d gg++ +              
     CDO70795.1 136 NNINAAGVVIQY-WTQK-----VHIAVWMIIFIAFIFFVNLLGIRVFGELEFWFSSIKV-ISLIGLLLMGIII-DLGGNPKHdrigfrywdhpygp 223
                    666666666666.5434.....4778889999***************************.6766677677777.6666665567888877777755 PP

  AA_permease_2 176 ..stetdtffpn...gwpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpd.dei......anlsnlg 257
                         +++++++   +  g++++l+ +l++++G e + + + e  +++k++p+ai   +  +lv+y++  +++  vvp  d+       ++++   
     CDO70795.1 224 mgKYLQNQVHNDhlaIFLGFWSTLTNALFAYIGTELIGVTVGEaqAPRKNIPIAIRRTFFRILVFYVGGVFVISLVVPStDQNlfvankSKPGAAA 319
                    4422222244444334445899*********************666669***********************999999977776776444444455 PP

  AA_permease_2 258 svaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsv 353
                    s++ +    vg kv+ ++++++i l +l a+n+ +++ +r+l+ la +g  Pr fa+vn+ g p+ a++l  +++ +++l ++ +ss+ + + +++
     CDO70795.1 320 SPFVVATTLVGIKVLNHVINAAILLFVLSAANSDLYIGTRTLYGLAIQGQAPRIFARVNRMGVPYMALFLCTLFCGLVFLNVSSSSSKVFGWFVNL 415
                    5688888888999****************************************************************9999998889999999999 PP

  AA_permease_2 354 sslgliisyllliigalilrkkrphl..kr...........pgkilvaiigalfllfllvalffp 405
                     s +  i ++ +  + +   k  + +   r           +g +   i  a++++f  + +f+p
     CDO70795.1 416 VSTFGAITWMCICYSHIRFMKALKAQglSRdalpykapfqpWGSWFALISTAIITTFKGFDTFIP 480
                    88888888877766666555555544335578866667775555655555566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3724.09
//
Query:       CDO70796.1  [L=267]
Description: hypothetical protein BN946_scf184798.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-24   85.6   0.0    3.8e-24   85.4   0.0    1.1  1  ECH_1     Enoyl-CoA hydratase/isomerase
    7.9e-17   61.7   0.0      9e-17   61.6   0.0    1.1  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   4.2e-28   3.8e-24       3     210 ..       9     226 ..       7     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 4.2e-28
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC......HHHHHHHCCHHHHHHHHHHSSSEEEEEE CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek......akqallkeevlelwtklytvpkpviaav 95 
                 ++ +a i++n P+ +Na++ +  + ++ al ++++   v + +    +k F+aG  ++  a  +k      a+  ++     +  ++lyt  k+++aa+
  CDO70796.1   9 SDRIATITFNSPKTLNAITRADYDAFARALREVDKRDDVLVTIWQANGKWFSAGTSVTGTADTSKklttreAFTSTIAPVNTDVSNALYTHSKILVAAL 107
                 5679*******************************99******************99999988775643323444444555678899************ PP

                 -SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHH...HHHHH.HHHH CS
       ECH_1  96 nGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlle...ealel.aekl 190
                 nG ++g  + +    D+++a  +a  + +++ lG+i +ag + ++ +++G +kA+e+l+ gkk  a+e+l+ G +++++pe+ + e     ++l +++l
  CDO70796.1 108 NGPVMGIAAAFLGHFDFIYALPSAWLSVPFTFLGIISEAGSSVTFRNRMGAAKANEVLIWGKKKDAKELLQCGFINAILPEQPVPEfqaAVRKLvLAEL 206
                 ********************************************************************************9766441104444314555 PP

                 HHSCHHHHHHHHHHHHHHHH CS
       ECH_1 191 aekspaalrqlkealnakle 210
                     p+al  +k+ ++a l+
  CDO70796.1 207 EGLDPTALLGVKKLIKAGLN 226
                 55556666666666666555 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0     1e-20     9e-17       2     190 ..      13     204 ..      12     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1e-20
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THH...HHHHHHHHHHHHHHHC-SS-EEEEE-BE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkee...eeffreeYklnyliatypkpvvalmdGi 97 
                 ++it+n pk+lNa++ +  +a+++al+e++k d+v + + +++g k f+AG  v   +++ k+ +++e   +++   + ++ +++ t +k +va ++G 
  CDO70796.1  13 ATITFNSPKTLNAITRADYDAFARALREVDKRDDVLVTIWQANG-KWFSAGTSVTGTADTSKKLTTREaftSTIAPVNTDVSNALYTHSKILVAALNGP 110
                 78********************************9888888877.**************999986553345666777889999**************** PP

                 EETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHH.HCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT... CS
       ECH_2  98 vmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfL.srlpgelGlylalTGarlkgadalaaglathyvpseklealeeaLaeless 190
                 vmG  +++  h  f  +  ++ +++P t +G++ + G s  + +r+  + +  + + G++ +++++l++g+ + ++p++ ++++++a+ +l  +
  CDO70796.1 111 VMGIAAAFLGHFDFIYALPSAWLSVPFTFLGIISEAGSSVTFrNRMGAAKANEVLIWGKKKDAKELLQCGFINAILPEQPVPEFQAAVRKLVLA 204
                 **************************************98652678888899999******************************999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.58
# Mc/sec: 1392.14
//
Query:       CDO70797.1  [L=333]
Description: hypothetical protein BN946_scf184798.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-54  179.2   4.6    2.5e-12   46.3   0.0    7.1  7  Prenyltrans      Prenyltransferase and squalene oxidase repea
    0.00047   19.4   0.0       0.62    9.1   0.0    3.0  3  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
  ------ inclusion threshold ------
      0.037   13.1   0.0       0.11   11.6   0.0    1.6  1  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
       0.18   11.3   0.0          1    8.9   0.0    1.9  2  Herpes_IR6       Herpesvirus IR6 protein


Domain annotation for each model (and alignments):
>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.056   2.5e+02      33      43 ..      21      31 ..      20      32 .. 0.86
   2 !    5.7   0.0    0.0028        13       2      16 ..      38      52 ..      37      56 .. 0.85
   3 !   15.7   0.0   2.1e-06    0.0093      18      42 ..      78     102 ..      70     104 .. 0.89
   4 !   35.4   0.0   1.4e-12   6.4e-09       2      44 .]     110     152 ..     109     152 .. 0.95
   5 !   46.3   0.0   5.7e-16   2.5e-12       2      44 .]     158     200 ..     157     200 .. 0.97
   6 !   34.0   0.0     4e-12   1.8e-08       2      43 ..     206     247 ..     205     248 .. 0.95
   7 !   35.5   0.0   1.3e-12     6e-09       1      44 []     253     297 ..     253     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.056
                 HHHHHHHHHHC CS
  Prenyltrans 33 tywalaaLall 43
                  yw+l+aL+ +
   CDO70797.1 21 VYWGLSALCVM 31
                 59******987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHSHT CS
  Prenyltrans  2 dvekavefLlscQne 16
                 +++++++f++sc+++
   CDO70797.1 38 NRDEMIDFVISCWDD 52
                 899*********984 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 2.1e-06
                  S-BBSSTTSSBBHHHHHHHHHHHHH CS
  Prenyltrans  18 GGwggrpgsesdtyytywalaaLal 42 
                  GG+g +pg+++++  t+ a++++ +
   CDO70797.1  78 GGFGASPGHDAHLLSTLSAIQIMVM 102
                  *******************998765 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 1.4e-12
                  HHHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   2 dvekavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  d+ +++ ++ls Q+++G ++g++ +e dt++ y+a++aL+llG
   CDO70797.1 110 DIPRVAKYILSLQQPSGVFAGDAFGEIDTRFLYCAINALSLLG 152
                  7778999***********************************8 PP

  == domain 5  score: 46.3 bits;  conditional E-value: 5.7e-16
                  HHHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   2 dvekavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  dvek v ++++c n dGG+g r g es++++ + ++aaLa+l+
   CDO70797.1 158 DVEKTVGYIRRCRNFDGGFGAREGAESHAAQVWVCVAALAILD 200
                  89***************************************96 PP

  == domain 6  score: 34.0 bits;  conditional E-value: 4e-12
                  HHHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHC CS
  Prenyltrans   2 dvekavefLlscQnedGGwggrpgsesdtyytywalaaLall 43 
                  dv+++ ++L  +Q + GG++grp++  d++y+ w+l+++++l
   CDO70797.1 206 DVDTLGWWLAERQLPNGGLNGRPEKLEDVCYSHWVLSSMSIL 247
                  899**********************77************998 PP

  == domain 7  score: 35.5 bits;  conditional E-value: 1.3e-12
                  HHHHHHHHHHHHHSH.TTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   1 idvekavefLlscQn.edGGwggrpgsesdtyytywalaaLallG 44 
                  i+ +k++ f+ls Q  e+GG ++rpg  +d+++t++++a+L+llG
   CDO70797.1 253 INADKLTAFILSAQApEHGGIADRPGNQPDVFHTLFGVAGLSLLG 297
                  6889****************************************8 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00014      0.62       3      71 ..     113     183 ..     111     195 .. 0.83
   2 ?    1.0   0.0      0.04   1.8e+02      35      74 ..     195     234 ..     187     238 .. 0.81
   3 !    5.7   0.0    0.0016         7      36      90 ..     244     299 ..     231     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00014
  SQHop_cyclase_N   3 raaeallslqkpdGhWvgeL..eanvtitaeyillreflgeddeeeeekiakylrsqqredGgWelypggp 71 
                      r a+++lslq+p G + g+   e ++ +   +i    +lg  +e + ek++ y+r+ ++ dGg++   g +
       CDO70797.1 113 RVAKYILSLQQPSGVFAGDAfgEIDTRFLYCAINALSLLGYLNEVDVEKTVGYIRRCRNFDGGFGAREGAE 183
                      7789*************99834556666666677777889999*********************9877765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.04
  SQHop_cyclase_N  35 lreflgeddeeeeekiakylrsqqredGgWelypggpgdl 74 
                         +l++ de + + +  +l ++q ++Gg +  p++  d+
       CDO70797.1 195 ALAILDRLDEVDVDTLGWWLAERQLPNGGLNGRPEKLEDV 234
                      55678999999999**************988777766665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0016
  SQHop_cyclase_N  36 reflgeddeeeeekiakylrsqqr.edGgWelypggpgdlsttveaYlALkllGds 90 
                      + +l++++  +++k++++++s q  e+Gg +  pg++ d++ t     +L llG++
       CDO70797.1 244 MSILKKIHWINADKLTAFILSAQApEHGGIADRPGNQPDVFHTLFGVAGLSLLGYP 299
                      4455777788999**********999*******************99999999985 PP

>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.11     157     230 ..     107     180 ..      87     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                      TSHHHHHHHHHHHHHS-TTS--....--SSBSSHHHHHHHHHHHHHHTT--TTSHHHHHHHHHHHTT--TTSSBB--G CS
  SQHop_cyclase_C 157 dsealkraveylkkeqepdGsW....fGrWGvnyiyGtwsvlsalaavgedleepvirkavdWlksvqnedGGWGesa 230
                      d+  + r  +y+ + q+p+G +    fG   + ++y ++++ls l   g  l+e  ++k+v ++++ +n dGG+G   
       CDO70797.1 107 DRIDIPRVAKYILSLQQPSGVFagdaFGEIDTRFLYCAINALSLL---GY-LNEVDVEKTVGYIRRCRNFDGGFGARE 180
                      4445678899********998744447777788888766555555...54.3456689****************9543 PP

>> Herpes_IR6  Herpesvirus IR6 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00022         1     145     184 ..     103     142 ..      89     149 .. 0.84
   2 ?   -0.3   0.0      0.14   6.3e+02      10      26 ..     155     171 ..     151     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00022
  Herpes_IR6 145 wdgPkripiPs.rryvlklgyelqenvteDafeevdtrllr 184
                  d+  ri+iP   +y+l l+   +  ++ Daf e+dtr+l 
  CDO70797.1 103 QDALDRIDIPRvAKYILSLQQPSG-VFAGDAFGEIDTRFLY 142
                 56778999**7369****999888.99************95 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
  Herpes_IR6  10 nrsdqalgrsyfrrCre 26 
                 n+ d   +  y rrCr+
  CDO70797.1 155 NEVDVEKTVGYIRRCRN 171
                 6677778889******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.36s 00:00:01.03 Elapsed: 00:00:00.58
# Mc/sec: 1743.11
//
Query:       CDO70798.1  [L=743]
Description: hypothetical protein BN946_scf184798.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.024   15.0   0.5       0.71   10.3   0.2    3.7  3  HEAT_2      HEAT repeats
      0.043   14.1   0.3         28    5.1   0.0    3.7  4  NUC130_3NT  NUC130/3NT domain
       0.21   12.2   1.5        1.3    9.6   0.1    2.9  3  Nexin_C     Sorting nexin C terminal


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.6   1.6e+04      38      71 ..     286     320 ..     284     322 .. 0.57
   2 ?   -1.1   0.0      0.43   2.6e+03       3      27 ..     437     461 ..     428     480 .. 0.67
   3 ?   10.3   0.2   0.00012      0.71      28      64 ..     657     697 ..     634     739 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.6
      HEAT_2  38 ellededpavRraaaeaLgai.gdpealpaLkell 71 
                 e l  + ++vR   a+ +    g++  ++ L ell
  CDO70798.1 286 ESLCLDVEDVRLSLARGMTFPdGEHGGVKCLSELL 320
                 55555667777777777766633455555555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.43
      HEAT_2   3 aLlqalendpdpevrraairaLgri 27 
                  L ++le d d +v++ +i  L  +
  CDO70798.1 437 DLAALLEPDTDLKVKHGVIGLLKHL 461
                 4566666677777777777666633 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00012
      HEAT_2  28 gnpealpaLvellededpa....vRraaaeaLgaigdpeal 64 
                 g+++al++L+++l+d++p+     R++++  Lg +g++ ++
  CDO70798.1 657 GPRRALDMLISVLRDSNPNvpaeMRANVCALLGHLGRKGVV 697
                 6789*********9999774444799999999999865543 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         2   1.2e+04      16      25 ..      58      67 ..      57      69 .. 0.87
   2 ?    4.5   0.0    0.0074        44      14      38 ..     108     132 ..     105     136 .. 0.91
   3 ?   -2.3   0.0         1   6.1e+03      26      47 ..     573     594 ..     571     597 .. 0.79
   4 ?    5.1   0.0    0.0047        28      18      52 .]     663     697 ..     659     697 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
  NUC130_3NT 16 fpqeLselLl 25
                +pq L++lL+
  CDO70798.1 58 LPQTLTSLLK 67
                799*****98 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0074
  NUC130_3NT  14 kefpqeLselLlehhsvLhpdlRkk 38 
                 + fpq ++ lL+ ++++++p  R++
  CDO70798.1 108 AGFPQTVVGLLEGYADSVKPAQRDA 132
                 57******************99976 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1
  NUC130_3NT  26 ehhsvLhpdlRkklvqaLvlLR 47 
                 ++++ ++  + +++v aL  L 
  CDO70798.1 573 KREAAMKAVVTEQCVSALARLI 594
                 66778888888999***99886 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0047
  NUC130_3NT  18 qeLselLlehhsvLhpdlRkklvqaLvlLRnKdiI 52 
                 ++L+++L+++  +++ ++R  ++  L  L +K+++
  CDO70798.1 663 DMLISVLRDSNPNVPAEMRANVCALLGHLGRKGVV 697
                 68*********************999999999875 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.91   5.5e+03      71      92 ..      44      66 ..      28      74 .. 0.78
   2 ?   -1.0   0.0      0.44   2.6e+03      42     105 ..     172     235 ..     158     236 .. 0.66
   3 ?    9.6   0.1   0.00022       1.3      48      96 ..     556     598 ..     528     603 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.91
     Nexin_C 71 rtraearklLle.llpdalvsvv 92
                +++ + ++ L + llp++l+s++
  CDO70798.1 44 SKNVDQQTALGQtLLPQTLTSLL 66
                56667778888889999999987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.44
     Nexin_C  42 likklrdalWPdgeskaesaperseeekl...rtraearklLlellpdalvsvvGrknaeealkrif 105
                  i kl+ a++P g+++ ++    se++k          r++L + +  a++++ G +++e+ ++ if
  CDO70798.1 172 TILKLSTAIYPLGSWSYSK---LSEDSKTedpVESWLLRSTLATWAWRAIAEIRGDEESEQQSRVIF 235
                 5667778888877444444...444444422255555677888888888888888888888877776 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00022
     Nexin_C  48 dalWPdgeskaesaperseeeklrtraearklLle.llpdalvsvvGrkn 96 
                 ++lW        + p+  +eek ++r++a k +++    +al++++Gr++
  CDO70798.1 556 KTLWS-------TDPKTLDEEKVKKREAAMKAVVTeQCVSALARLIGRSK 598
                 67886.......446788899999999999999988***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 4682.30
//
Query:       CDO70799.1  [L=294]
Description: hypothetical protein BN946_scf184798.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-20   71.7   1.6    6.8e-20   71.5   0.1    1.9  2  RWD             RWD domain
    3.4e-08   33.9  11.5    3.4e-08   33.9  11.5    2.5  2  DFRP_C          DRG Family Regulatory Proteins, Tma46
  ------ inclusion threshold ------
       0.22   11.9   3.3       0.48   10.8   3.3    1.6  1  FinO_N          Fertility inhibition protein N terminal


Domain annotation for each model (and alignments):
>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.1   1.1e-23   6.8e-20       3     115 ..       6     108 ..       4     109 .. 0.91
   2 ?   -1.6   0.1      0.53   3.1e+03      19      19 ..     202     202 ..     163     248 .. 0.48

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.1e-23
                 HHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECC.SS-HHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
         RWD   3 qeqEleaLesIypdefevienenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsste.nlpkeqvksleekleelaeenl 100
                  ++E e+LesIyp e++++++++ +    i i++d + d         ++  l l+++++  YP+ +P +sl++te +l+++++k+l+e+l+++ eenl
  CDO70799.1   6 LAEEFEVLESIYPTELTKLSEREIR----IAIEPDDPVDG-------VEPLALALDVEYTDGYPDALPNFSLEATEgELDEAEIKHLHEELQKVGEENL 93 
                 689*****************77777....77777777665.......579************************************************* PP

                 TS--CHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx RF
         RWD 101 gepvifalidwlken 115
                 g+++ f+l+++l+e 
  CDO70799.1  94 GMAMTFTLVTHLRER 108
                 ************996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.53
                 C CS
                 x RF
         RWD  19 e 19 
                  
  CDO70799.1 202 L 202
                 0 PP

>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9  11.5   5.7e-12   3.4e-08       7      88 ..     124     223 ..     121     224 .. 0.72
   2 ?   -0.9   0.1      0.39   2.4e+03      68      76 ..     227     235 ..     219     250 .. 0.48

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 5.7e-12
      DFRP_C   7 fiEteRakL.....dkklTpvtletFakWKkkrlekkeaeeekeekkkkke..............glsGrelfefnpelaedddeeeeeeeeeawdlee 86 
                   E+eR+ L      +  Tpvt+e+F++WK+k  ++ ++++++ee+++ k               +l+Gr+lfe + +l ++d++ +e e   ++d+++
  CDO70799.1 124 EAEKERKALeaeeaRTRGTPVTVESFKAWKAKFDKELAEKRAREEEERLKGispkereeykrmqtRLTGRQLFERDRTLSAEDESYNE-EGAVSVDISQ 221
                 5699****9777654589************875555554444444444444556777899**************66666666666555.5577899998 PP

      DFRP_C  87 fr 88 
                 ++
  CDO70799.1 222 YD 223
                 86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
      DFRP_C  68 edddeeeee 76 
                 ++++e++++
  CDO70799.1 227 QEEEENDDD 235
                 222222221 PP

>> FinO_N  Fertility inhibition protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.3     8e-05      0.48      13      52 ..     129     169 ..     117     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8e-05
      FinO_N  13 RktegtAParsRkkiinvttPPkWkvkkek.LaekakreAe 52 
                 Rk+     ar+R + + v +  +Wk+k +k Laek +re e
  CDO70799.1 129 RKALEAEEARTRGTPVTVESFKAWKAKFDKeLAEKRAREEE 169
                 55544446899****************7655*****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2050.45
//
Query:       CDO70800.1  [L=136]
Description: hypothetical protein BN946_scf184798.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-08   33.9   3.6    3.1e-08   33.2   3.6    1.4  1  Ribosomal_S21  Ribosomal protein S21


Domain annotation for each model (and alignments):
>> Ribosomal_S21  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   3.6   1.7e-12   3.1e-08       2      55 .]      65     117 ..      64     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.7e-12
  Ribosomal_S21   2 VvVkdgenierALkrfkrkveragvirevrrrryyekpsekrkrkkkearrrrr 55 
                    V V ++  +  AL ++k +++ + v+++  r +++ek++ekr r+++ ++rrr+
     CDO70800.1  65 VPVVNN-QVSLALNKLKSILAVNAVRQTNIRDERHEKKGEKRNRLRSLRWRRRF 117
                    899999.*********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1047.23
//
Query:       CDO70801.1  [L=495]
Description: hypothetical protein BN946_scf184798.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3411.02
//
Query:       CDO70802.1  [L=215]
Description: hypothetical protein BN946_scf184798.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-09   35.9   0.9    9.1e-09   35.1   0.4    1.7  2  Cyclin_N    Cyclin, N-terminal domain
      9e-05   22.5   0.2      0.055   13.6   0.0    2.3  2  Cyclin_C    Cyclin, C-terminal domain
    0.00015   21.7   0.5     0.0054   16.8   0.2    2.4  2  TFIIB       Transcription factor TFIIB repeat
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.024   15.0   0.0    1.6  1  Cyclin_C_2  Cyclin C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.4     2e-12   9.1e-09      53     125 ..       2      90 ..       1      92 [. 0.87
   2 ?   -3.1   0.0       1.3     6e+03      74      86 ..     136     148 ..     131     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2e-12
                 HHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHT................TT.SS-HHHHHHHHHHHHHHTTT- CS
    Cyclin_N  53 flavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyit................de.afteeeilemErliLetLnfd 125
                 ++a+  ++Rf+ + s++ +++q v+a+c++lA+K+ee+   kl+d++ ++                +e    ++ il  E+ +Le L+fd
  CDO70802.1   2 YTAAAWFHRFYMRYSMEDYHRQDVAASCIFLATKTEEC-GRKLRDVAKVVcskvshidiakiaddsKEvEECQTSILLTEEVLLEGLCFD 90 
                 899**********************************9.799999998888999999999999765334344678999999999999998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHH CS
    Cyclin_N  74 qlvgatcLllAaK 86 
                 + ++a+c +lA +
  CDO70802.1 136 KIIAAACYVLAER 148
                 6788999888855 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0012       5.3      35      71 ..      13      46 ..      11      79 .. 0.62
   2 !   13.6   0.0   1.2e-05     0.055      22      64 ..     113     155 ..     101     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
                CSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHH CS
    Cyclin_C 35 ldydflsyppSliAaaalllarstlnspewtetlehy 71
                + y++ +y    +Aa++++la++t   +e+ ++l  +
  CDO70802.1 13 MRYSMEDYHRQDVAASCIFLATKT---EECGRKLRDV 46
                678899999999***********9...3333333332 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
                 CHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S CS
    Cyclin_C  22 lrtlakylleltlldydflsyppSliAaaalllarstlnspew 64 
                 ++  a  ++  +     +l ypp +iAaa+++la + ++ p+ 
  CDO70802.1 113 IEECAWSIANDSFRTPLCLLYPPKIIAAACYVLAERAMEGPHS 155
                 55556666666666667999**************999877664 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   1.2e-06    0.0054      18      64 ..       4      50 ..       2      63 .. 0.82
   2 ?    2.9   0.0     0.025   1.1e+02      36      56 ..     135     155 ..     108     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
                HHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHS CS
       TFIIB 18 AkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvl 64
                A  ++++ + +  ++    + +aA+c+++A++ ee  r ++++++v+
  CDO70802.1  4 AAAWFHRFYMRYSMEDYHRQDVAASCIFLATKTEECGRKLRDVAKVV 50
                566777777777777777899**********************9984 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.025
                 TTHHHTTHHHHHHTTTTSS-- CS
       TFIIB  36 pagiaAAclyiAcrkeevkrt 56 
                 p+ iaAAc  +A r+ e  ++
  CDO70802.1 135 PKIIAAACYVLAERAMEGPHS 155
                 667899999899998887776 PP

>> Cyclin_C_2  Cyclin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   5.4e-06     0.024      26      66 ..     112     151 ..      53     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.4e-06
  Cyclin_C_2  26 kaykrareilkssalltDayflytPsqIalaallladekla 66 
                 ++++ a+ i + +++ t +++ly+P  Ia a+ +la+++++
  CDO70802.1 112 EIEECAWSIAN-DSFRTPLCLLYPPKIIAAACYVLAERAME 151
                 57778889999.************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1564.96
//
Query:       CDO70803.1  [L=299]
Description: hypothetical protein BN946_scf184798.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-59  199.9   0.0    6.3e-59  199.5   0.0    1.1  1  IF-2B     Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.0   3.5e-63   6.3e-59      30     282 .]       3     286 ..       1     286 [. 0.93

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 3.5e-63
                 HHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHH.HHHCCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEEEEES--SHHHHHHHHH CS
       IF-2B  30 eLkeelrkaidlLkkarPtavslgnairrllk.eiselksssdvkeakksliekikelikeieeadekigdiaaelikdgdtilTicnsktvlevlraa 127
                 eL++ l++++++Lk   P+ +sl   ++ + +   +  ++s +  e kk+l ++ ++++ e+   + ki++ a  +ikd+ +ilT+++s++vl+ l +a
  CDO70803.1   3 ELVQALNDSAEELKRRSPNPISLNAGCELFIAfVTLFPHESDNFAELKKELEQQGRKYAAEAISFRDKIAELALGFIKDDSVILTHSYSRVVLKALLHA 101
                 7999****************************544556899999******************************************************* PP

                 HHTTEEEEEEEEEXTTTTHHHTHHHHHHHTTXEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSEEEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTS CS
       IF-2B 128 akekkkfkVivvEsrPrlqGrltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfserv 226
                 +k  k+++V+v+EsrPr  G +t++ L+ agip+t+++dsavayvm++ vd v+vG ++++e G+++n +G++++A++Ak++n p+++ aes+kf++ +
  CDO70803.1 102 HK-TKRISVYVTESRPRGLGLKTYEALTAAGIPCTVVLDSAVAYVMDR-VDFVLVGSEAVVESGGLINYVGSNQMAIIAKAANKPFYALAESYKFHRLF 198
                 *9.679******************************************.************************************************** PP

                 SSGGGSSXXBEXTHHHHEETTEESSTT..................................TEEEEEBSEEEEEGGGXSEEEETTEEEXC CS
       IF-2B 227 qldedifieerdpeellnitgeriaee..................................elkvvnpafDvtPpelItliITevGvlpp 282
                 +l++ ++    +p+ l   t +    +                                  e    np +D+t p+lI+l++++vG+l+p
  CDO70803.1 199 PLSQYDL-PTHNPNILSFSTPTAR-SAgqdsasttvaseasekssankgtssspperamtqEQIAKNPGVDYTRPDLISLVFSDVGILTP 286
                 ****998.5566665555554443.335789*****************************988899**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2182.30
//
Query:       CDO70804.1  [L=208]
Description: hypothetical protein BN946_scf184798.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1481.53
//
Query:       CDO70805.1  [L=2216]
Description: hypothetical protein BN946_scf184798.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-26   93.0   0.0    2.3e-06   27.3   0.0    5.2  5  CLASP_N    CLASP N terminal
    1.6e-11   43.4  18.0       0.83   10.1   0.0   12.3 13  HEAT       HEAT repeat
    4.2e-08   33.5  17.3        5.4    7.5   0.0    9.7 10  HEAT_2     HEAT repeats
    1.7e-06   28.2   0.2         14    5.7   0.0    7.2  8  Cnd1       non-SMC mitotic condensation complex subunit 1
    0.00011   21.9   1.2         11    5.5   0.0    6.0  7  MMS19_N    Dos2-interacting transcription regulator of RNA-Po
    0.00017   20.3   0.8          3    6.3   0.2    4.8  6  Adaptin_N  Adaptin N terminal region
    0.00051   20.2   7.2      0.024   14.8   0.1    4.9  5  TAN        Telomere-length maintenance and DNA damage repair
  ------ inclusion threshold ------
       0.11   12.7   0.3         12    6.1   0.0    4.5  5  RTP1_C1    Required for nuclear transport of RNA pol II C-ter


Domain annotation for each model (and alignments):
>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.48   1.1e+03     142     212 ..      24      92 ..      18     103 .. 0.69
   2 !   26.6   0.0   1.7e-09   3.8e-06      19     210 ..     302     485 ..     292     500 .. 0.87
   3 !   17.0   0.0   1.5e-06    0.0034      19     224 ..     658     849 ..     647     852 .. 0.92
   4 !   27.3   0.0     1e-09   2.3e-06      19     200 ..     919    1091 ..     912    1125 .. 0.89
   5 !   14.3   0.0     1e-05     0.022      89     202 ..    1382    1489 ..    1344    1514 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.48
     CLASP_N 142 KnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAk 212
                 Kn ++R  + + L  +++  +s++  + +        ++lkk+ +Dan    e+  +++++f k + ++A 
  CDO70805.1  24 KNWKARVSAYEALVKIFQTTASDSDPAFKPY--LNNPDTLKKIATDANAVAQEKGLECLVNFVKFAGENAA 92 
                 6666666666666666666552222222222..13457899999999999999999999999999888886 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.7e-09
     CLASP_N  19 lnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqa 117
                   w+ R++++ +l +li+     +  +el +++k+l+ ++ k ++      ++ +   l+ la+    +++ + e+++p++l+++   K  +  +  +a
  CDO70805.1 302 SKWKERKEALDELLNLINATPRIKEASELGDVIKSLAVCVQKDANI--NC-VMIAANCLEGLAKAMMGSFARYRESTVPLMLERMKERKVNVTDAIGNA 397
                 67******************999999********777777776654..33.333445689*************************************** PP

     CLASP_N 118 laallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsr 210
                 l+a+++ ++  ++il  +  al+ Kn+q +e  +++++  l+ ++     + a + ++ + ++l ++leD+  + R++a  ++ +++k++ +r
  CDO70805.1 398 LDAIFATTN-LSDILPDTLPALNSKNPQVKEGTLKFISRCLSTSP---TPIPAPQ-IKPLSEALASLLEDSFEGARNEAAVCLGTLMKMVGER 485
                 *********.99**99*****************************...4444444.799********************99998888887665 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.5e-06
     CLASP_N  19 lnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqa 117
                  nw+ R +++ ++   i+g + e  +e ++  l        +  ++   ++s+++  +l+ la+ + +   ++v   +p+L + lgd+K    + a  +
  CDO70805.1 658 PNWKVRLAALEEMTTWIEGAATELDPEVVVRFLA------KRGWNEKNFQVSTKLYGILQILAERCPTFGRASVALCVPHLSEKLGDMK--LKKPAGET 748
                 69******************99999999999987......6889999999999999**********9999999***************9..5789999* PP

     CLASP_N 118 laallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAkslls 216
                 l  + +++s++  + + ++ ++++K ++  + +++w++++l +f+       a l l+++ + lk +l+ +n +VR +a +t++++   + s  k ll+
  CDO70805.1 749 LLLFAEKTSLQFVLGHAYEPLSKQKAPKVLADALTWVEQALVEFG------IAGLSLRSLIEFLKTALKNSNAAVRTSATKTLVTVKLFAGSSIKDLLE 841
                 *99******777779******************************......6667789999**************************99999999999* PP

     CLASP_N 217 sldpkvrk 224
                 +++p++  
  CDO70805.1 842 DVNPQLLA 849
                 99999866 PP

  == domain 4  score: 27.3 bits;  conditional E-value: 1e-09
     CLASP_N   19 lnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnan 115 
                   +w+++++++ +l+ ++ +  p++  ++ +  +    + +   +++   ++ + ++ ++ ++a   ++ +++  + ++     +l+d+K  i+++a 
  CDO70805.1  919 DSWKTKKEALETLQAILDQG-PNKRLKPTMGEIG---QVLKARVTDANKAVQMLALDIVARIATGMGKPFEKHTRFYVVPVASVLADQKAPIRAAAL 1011
                  69******************.5555555555555...355566777778899999****************************************** PP

     CLASP_N  116 qalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstf 200 
                  q+l+a++++++  + ++  + +al+  n+ +R+  + w++  ++++e     l   l l +    ++ +l D +  VR+ a +++
  CDO70805.1 1012 QTLTAMVNACEGFEPLVPGIATALESPNPLQRASLLSWIAEWFKEHE-----LPSGLDLTSWAGHVVGCLDDRSGDVRKGAQALL 1091
                  ***********88889999****************************.....7777777789999**************999876 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1e-05
     CLASP_N   89 dpmveillptLlkllgdtKkiisqnanqalaallsnasfspri.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkg 184 
                  d+ +  ++pt++  lgd  + +++  + ++++l +   + +r+ + +l+++l+ K +++R+  +  L+ ll+rf+    + e  + +    +++   
  CDO70805.1 1382 DQEAMCFIPTIVHKLGDAREPVRARVSLIVQTLPKVYAY-SRVfQLLLENGLKSKVAKTRQGTLDELAGLLKRFG--IGACEPAKAF----PVIAGT 1471
                  4458899***************************99995.56649999***************************..6777777766....****** PP

     CLASP_N  185 leDanptVRetaRstfwe 202 
                  ++D +p+VR++a +++ e
  CDO70805.1 1472 ISDKDPQVRKSALAVLSE 1489
                  **********99777655 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.031        70       8      29 ..      20      41 ..      16      43 .. 0.87
   2 ?   -2.7   0.2       4.7   1.1e+04      10      29 ..     343     362 ..     335     363 .. 0.79
   3 ?   -0.4   0.0      0.89     2e+03       6      25 ..     415     434 ..     410     439 .. 0.77
   4 ?    1.7   0.1      0.19   4.2e+02       4      29 ..     455     480 ..     452     482 .. 0.89
   5 !    9.9   0.0   0.00044      0.98       7      22 ..     653     668 ..     646     676 .. 0.81
   6 ?    5.1   0.0     0.014        32       1      26 [.     802     827 ..     802     828 .. 0.90
   7 ?    0.4   0.0      0.47   1.1e+03      10      28 ..     917     935 ..     911     937 .. 0.84
   8 ?   -2.9   0.1       5.6   1.3e+04       8      29 ..     957     978 ..     952     979 .. 0.80
   9 !    5.7   0.2    0.0093        21       7      30 ..     997    1020 ..     992    1021 .. 0.84
  10 ?    3.5   0.0     0.048   1.1e+02       1      25 [.    1027    1051 ..    1027    1056 .. 0.88
  11 ?   -0.3   0.0      0.79   1.8e+03       5      28 ..    1072    1095 ..    1070    1098 .. 0.81
  12 ?   -1.1   0.0       1.4   3.2e+03       1      20 [.    1388    1407 ..    1388    1414 .. 0.85
  13 !   10.1   0.0   0.00037      0.83       2      25 ..    1465    1488 ..    1464    1489 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.031
                HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  8 llsDpspeVReaAakaLgalae 29
                 l +++++ R +A +aL+++ +
  CDO70805.1 20 RLAHKNWKARVSAYEALVKIFQ 41
                5889**************9976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.7
                 T-SSHHHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgalae 29 
                 +D + +  + Aa++L  la+
  CDO70805.1 343 KDANINCVMIAANCLEGLAK 362
                 6777777889*****99987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.89
                 HHHHT-SSHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLg 25 
                 l +l++++p+V e ++k + 
  CDO70805.1 415 LPALNSKNPQVKEGTLKFIS 434
                 7789*******998877665 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.19
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +l +ll+D+    R  Aa +Lg+l++
  CDO70805.1 455 ALASLLEDSFEGARNEAAVCLGTLMK 480
                 688999999999************97 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00044
                 HHHT-SSHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAak 22 
                 + l Dp+++VR aA++
  CDO70805.1 653 TDLGDPNWKVRLAALE 668
                 5589**********97 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.014
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 l+ +l ++l+ +++ VR +A k+L++
  CDO70805.1 802 LIEFLKTALKNSNAAVRTSATKTLVT 827
                 67889999***************975 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.47
                 T-SSHHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgala 28 
                 +++s++  + A+++L a++
  CDO70805.1 917 KSDSWKTKKEALETLQAIL 935
                 789*************997 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 5.6
                 HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgalae 29 
                   +D +  V + A+  ++++a 
  CDO70805.1 957 RVTDANKAVQMLALDIVARIAT 978
                 369999********99999985 PP

  == domain 9  score: 5.7 bits;  conditional E-value: 0.0093
                  HHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    7 kllsDpspeVReaAakaLgalaev 30  
                  + l D+ + +R+aA+++L+a++  
  CDO70805.1  997 SVLADQKAPIRAAALQTLTAMVNA 1020
                  55889999************9865 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.048
                  HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLg 25  
                  l+P + ++l++p+p +R++ +  ++
  CDO70805.1 1027 LVPGIATALESPNPLQRASLLSWIA 1051
                  7899*************99888776 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 0.79
                  HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLgala 28  
                  ++ +l D s +VR+ A   L +l+
  CDO70805.1 1072 VVGCLDDRSGDVRKGAQALLPTLI 1095
                  67899********99988887776 PP

  == domain 12  score: -1.1 bits;  conditional E-value: 1.4
                  HHHHHHHHHT-SSHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaA 20  
                  ++P++++ l D    VR+ +
  CDO70805.1 1388 FIPTIVHKLGDAREPVRARV 1407
                  68***************876 PP

  == domain 13  score: 10.1 bits;  conditional E-value: 0.00037
                  HHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLg 25  
                  +P++   +sD++p+VR++A+  L 
  CDO70805.1 1465 FPVIAGTISDKDPQVRKSALAVLS 1488
                  58999999***********99886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.098   2.2e+02      39      75 ..      20      59 ..      16     104 .. 0.81
   2 ?    1.9   0.1      0.13   2.9e+02       2      76 ..     292     388 ..     291     399 .. 0.68
   3 !    7.5   0.0    0.0024       5.4       5      82 ..     415     505 ..     411     510 .. 0.71
   4 ?    3.4   0.0     0.047     1e+02      10      25 ..     656     671 ..     649     702 .. 0.64
   5 !    5.7   0.1    0.0085        19      24      60 ..     794     830 ..     773     856 .. 0.74
   6 !    6.6   0.6    0.0045        10      10      87 ..     917    1014 ..     910    1015 .. 0.72
   7 ?    4.2   0.4     0.025        56       4      58 ..     954    1017 ..     952    1047 .. 0.72
   8 ?    1.4   0.1      0.19   4.3e+02       8      49 ..     999    1044 ..     992    1090 .. 0.64
   9 !    7.3   0.0    0.0027       6.1      24      57 ..    1456    1489 ..    1426    1519 .. 0.74
  10 ?   -3.3   0.0       5.5   1.2e+04      52      59 ..    2099    2106 ..    2085    2126 .. 0.45

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.098
      HEAT_2 39 llededpavRraaaeaLgai...gdpealpaLkelldddd 75
                 l ++++  R  a eaL++i     +++ pa k +l+++d
  CDO70805.1 20 RLAHKNWKARVSAYEALVKIfqtTASDSDPAFKPYLNNPD 59
                6788999999999999998854434667777777776554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...........ealpaLvell.ededpavRraaaeaL.....gaig.....dpealpaLkellddddd 76 
                 ++ lqa  +++ ++ r++a+++L ++ n            ++++ L  ++ +d++ +  + aa+ L     + +g     +++++p+ +e++++ ++
  CDO70805.1 292 PVNLQASLKSSKWKERKEALDELLNLINAtprikeaselgDVIKSLAVCVqKDANINCVMIAANCLeglakAMMGsfaryRESTVPLMLERMKERKV 388
                 677888889999********99995433324555557777778888888888999999999998884333312233333358888888888876555 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0024
      HEAT_2   5 lqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvRea 82 
                 l al n+++p+v+  +++ + r+ ++            + +aL +lled+ +  R +aa  Lg +     ++ l+aL + l+d ++  v+ea
  CDO70805.1 415 LPAL-NSKNPQVKEGTLKFISRCLSTsptpipapqikPLSEALASLLEDSFEGARNEAAVCLGTLMkmvGERPLNALMDGLADVRKVKVKEA 505
                 5677.7888888888777777655543333444433333899999*****************965423368999999999998877777775 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.047
      HEAT_2  10 ndpdpevrraairaLg 25 
                  dp+++vr aa++++ 
  CDO70805.1 656 GDPNWKVRLAALEEMT 671
                 4555555555555544 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0085
      HEAT_2  24 LgrignpealpaLvellededpavRraaaeaLgaigd 60 
                 ++ +  +++++ L  +l+++++avR  a ++L+ +++
  CDO70805.1 794 IAGLSLRSLIEFLKTALKNSNAAVRTSATKTLVTVKL 830
                 4555666889999999999999999999999987763 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0045
      HEAT_2   10 ndpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgai....g.....dpealpaLkellddddddvvReaAaea 86  
                  ++ +++++++a+++L  i ++           e+ + L   ++d++ av++ a +  ++i    g     + +++ +  ++++ d+++ +R+aA+++
  CDO70805.1  917 KSDSWKTKKEALETLQAILDQgpnkrlkptmgEIGQVLKARVTDANKAVQMLALDIVARIatgmGkpfekHTRFYVVPVASVLADQKAPIRAAALQT 1013
                  688999**********66666566677777888999999999************9999994444133332455544444445567788888888887 PP

      HEAT_2   87 L 87  
                  L
  CDO70805.1 1014 L 1014
                  7 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.025
      HEAT_2    4 LlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai 58  
                  L +++ +d++++v+  a++  +ri++            ++  + ++l d+++ +R+aa ++L a+
  CDO70805.1  954 LKARV-TDANKAVQMLALDIVARIATGmgkpfekhtrFYVVPVASVLADQKAPIRAAALQTLTAM 1017
                  44444.89999999999999996666544335443323377788888999999999999999876 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.19
      HEAT_2    8 lendpdpevrraairaLgrignp.....ealpaLvellededpavRr 49  
                  l  d    +r+aa+++L  + n       ++p +  +le+++p  R+
  CDO70805.1  999 L-ADQKAPIRAAALQTLTAMVNAcegfePLVPGIATALESPNPLQRA 1044
                  3.455556666666666644443323324466666666666666665 PP

  == domain 9  score: 7.3 bits;  conditional E-value: 0.0027
      HEAT_2   24 LgrignpealpaLvellededpavRraaaeaLga 57  
                  +g + + +a+p +   ++d+dp vR+ a   L++
  CDO70805.1 1456 IGACEPAKAFPVIAGTISDKDPQVRKSALAVLSE 1489
                  33666779********************999974 PP

  == domain 10  score: -3.3 bits;  conditional E-value: 5.5
      HEAT_2   52 aeaLgaig 59  
                   +aL+  +
  CDO70805.1 2099 TRALASRA 2106
                  33333222 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.7   3.7e+03      98     139 ..      58      96 ..      34     158 .. 0.49
   2 ?    0.2   0.2      0.31     7e+02      25      89 ..     294     364 ..     286     437 .. 0.66
   3 ?    1.5   0.0      0.13   2.8e+02      19      50 ..     449     480 ..     444     491 .. 0.90
   4 ?    2.4   0.0     0.065   1.5e+02      22      87 ..     802     830 ..     798     859 .. 0.59
   5 !    5.2   0.0    0.0089        20      24      88 ..     952    1020 ..     940    1055 .. 0.81
   6 ?    0.1   0.0      0.32   7.2e+02      22      49 ..    1068    1095 ..    1065    1106 .. 0.85
   7 ?   -2.8   0.0       2.5   5.6e+03      73     110 ..    1364    1401 ..    1352    1421 .. 0.67
   8 !    5.7   0.0    0.0064        14      27      46 ..    1469    1488 ..    1428    1497 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
        Cnd1  98 pdiisklsdalnecsewgqitilefLlsyipkdkqeaeslve 139
                 pd+++k+ ++   ++  +q + le+L+++++   ++a    e
  CDO70805.1  58 PDTLKKIATD---ANAVAQEKGLECLVNFVKFAGENAARTRE 96 
                 5555555432...33333333333333333333222222222 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.31
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilnd.mvkekg....flselakll.eDenprVvanalaalteiseks 89 
                 +L+++Lk ++   Rk a+  +++Li+++  +ke      +++ la ++ +D n + v  a ++l+ +++  
  CDO70805.1 294 NLQASLKSSKWKERKEALDELLNLINATpRIKEASelgdVIKSLAVCVqKDANINCVMIAANCLEGLAKAM 364
                 67777777777778888888888888774344332222688889999988999888888888888887764 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.13
        Cnd1  19 veylvepLrkrLkDedpyVRktaaivvakLil 50 
                 + +l+e L + L+D+ +  R+ aa+++  L++
  CDO70805.1 449 IKPLSEALASLLEDSFEGARNEAAVCLGTLMK 480
                 679999*********************99965 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.065
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteise 87 
                 l+e L+++Lk +++ VR  a  ++                                       ++ 
  CDO70805.1 802 LIEFLKTALKNSNAAVRTSATKTLV-------------------------------------TVKL 830
                 5666666666677777666655443.....................................3333 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.0089
        Cnd1   24 epLrkrLkDedpyVRktaaivvakL...ilndmvkekg.flselaklleDenprVvanalaalteisek 88  
                  + L++r++D +  V++ a+ +va++   + + + k     +  +a+ l D+++ ++a al  lt + + 
  CDO70805.1  952 QVLKARVTDANKAVQMLALDIVARIatgMGKPFEKHTRfYVVPVASVLADQKAPIRAAALQTLTAMVNA 1020
                  678999999999999999999999997666677777777889999999999999999999999877665 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.32
        Cnd1   22 lvepLrkrLkDedpyVRktaaivvakLi 49  
                  +  ++  +L D++  VRk a  ++  Li
  CDO70805.1 1068 WAGHVVGCLDDRSGDVRKGAQALLPTLI 1095
                  6778889***********9998888886 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 2.5
        Cnd1   73 rVvanalaalteisek.senaiynllpdiisklsdalne 110 
                   V++ +la+l+ +  + s+++++   p+i++kl da  e
  CDO70805.1 1364 DVIEAVLAFLQSVDYQlSDQEAMCFIPTIVHKLGDA-RE 1401
                  577777777777777776677777777777777754.33 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.0064
        Cnd1   27 rkrLkDedpyVRktaaivva 46  
                    +++D+dp+VRk a+ v++
  CDO70805.1 1469 AGTISDKDPQVRKSALAVLS 1488
                  44566666666666666654 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.042        94     195     237 ..     360     403 ..     350     415 .. 0.79
   2 !    5.5   0.0    0.0049        11       7      70 ..     417     481 ..     413     509 .. 0.78
   3 ?   -1.5   0.0      0.67   1.5e+03     201     245 ..     753     798 ..     749     815 .. 0.80
   4 ?   -2.3   0.0       1.2   2.7e+03       2      27 ..     804     831 ..     803     855 .. 0.71
   5 !    5.1   0.0    0.0065        15     218     259 ..     917     958 ..     911     960 .. 0.91
   6 ?   -2.8   0.0       1.7   3.8e+03       7      31 ..     998    1022 ..     995    1032 .. 0.78
   7 ?   -1.5   0.0      0.69   1.6e+03      71     113 ..    1412    1454 ..    1300    1478 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.042
     MMS19_N 195 Lrecla.asplfaplalplllekLdstsvsakldaLqtlaacve 237
                 L ++++ +  ++ + ++pl+le++++ +v++ + + ++l a++ 
  CDO70805.1 360 LAKAMMgSFARYRESTVPLMLERMKERKVNVTDAIGNALDAIFA 403
                 5555541557899*****************99999888888776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0049
     MMS19_N   7 yLtseddkvRakavslLaevlsrlpkkklseeevevLvqFflsrle.dfavlk.ealkgllaLlrl 70 
                 +L+s++ +v++ ++++++++ls +p+ ++++ +++ L++ ++s le  f++ + ea+ +l +L+++
  CDO70805.1 417 ALNSKNPQVKEGTLKFISRCLSTSPT-PIPAPQIKPLSEALASLLEdSFEGARnEAAVCLGTLMKM 481
                 79999*****************9998.9*****************955565541666677777766 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.67
     MMS19_N 201 asplfaplalplllekLds.tsvsakldaLqtlaacveaygaeava 245
                 a++   +++l +  e L++ + +++  daL+ + +++ ++g + ++
  CDO70805.1 753 AEKTSLQFVLGHAYEPLSKqKAPKVLADALTWVEQALVEFGIAGLS 798
                 55666689999999***9989999*************999988765 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.2
     MMS19_N   2 eaLgeyLtseddkvRakavslLaev..l 27 
                 e L+++L +++ +vR+ a++ L +v  +
  CDO70805.1 804 EFLKTALKNSNAAVRTSATKTLVTVklF 831
                 5688999999999999999999888551 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.0065
     MMS19_N 218 dstsvsakldaLqtlaacveaygaeavaehlralwsalkkei 259
                 +s+s ++k++aL+tl+a++++  ++++++ + ++ + lk  +
  CDO70805.1 917 KSDSWKTKKEALETLQAILDQGPNKRLKPTMGEIGQVLKARV 958
                 678999*******************************99876 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 1.7
     MMS19_N    7 yLtseddkvRakavslLaevlsrlp 31  
                  +L +++  +Ra a++ L++++++++
  CDO70805.1  998 VLADQKAPIRAAALQTLTAMVNACE 1022
                  6777888888888888888888775 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 0.69
     MMS19_N   71 kkfsaeeavevlralfeevhvqslaqadRklvyelldallekh 113 
                  ++++++ a + + +l+ e  ++s+++++R+ +++ l  ll+++
  CDO70805.1 1412 QTLPKVYAYSRVFQLLLENGLKSKVAKTRQGTLDELAGLLKRF 1454
                  4444444333333333344455555555555555555555544 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.12   2.7e+02     321     396 ..     115     193 ..      66     202 .. 0.85
   2 !    6.3   0.2    0.0014         3     117     295 ..     293     482 ..     283     503 .. 0.70
   3 ?    0.7   0.0     0.068   1.5e+02     231     259 ..     801     829 ..     768     861 .. 0.71
   4 !    5.9   0.0    0.0018         4     249     334 ..     928    1020 ..     894    1047 .. 0.88
   5 ?   -2.6   0.0      0.67   1.5e+03     119     136 ..    1468    1485 ..    1463    1489 .. 0.69
   6 ?   -3.4   0.0       1.1   2.5e+03     391     424 ..    1687    1720 ..    1686    1736 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
                 HHHHHHHHCCCXXTTTHHH.HHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS...CCHHHHHHHHHHHHHTTXXHHHHHH CS
   Adaptin_N 321 rlkaldlllklvdesNvke.ivkeLkkyvkevadedfksklvkaIgrlaekf...atdaewvldvllellslsgesvkde 396
                 +  a++l+l+ v  +N  + +v+ ++  +  ++ +  ++ +v+aI+++  +f   +t  ++vl+vl ++   s+++v++e
  CDO70805.1 115 KAQAMELSLQYVEVENGAAgVVDNILPGL-GAKQPKTVAGCVTAIREIVRQFgtsVTPPASVLKVLPKIFAHSDKTVRAE 193
                 56788888888888885544888888888.5667889***************877778899*****99999999999776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0014
                 HHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCT....T-SSHHHHHHHHHHHHHH.HCCCCCCC....HHHHHHHCCHHHH.HHCS CS
   Adaptin_N 117 paikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikell....sdkdpgvvlaAvalleei.kkndrlll....kllpklvrrLcnl.ltel 204
                   +++ lk+++   rk+A+  +l l+ ++p + +   l + ik+l     +d ++ +v  A + le + k  + +++    + +p++ +r+++  ++++
  CDO70805.1 293 VNLQASLKSSKWKERKEALDELLNLINATPRIKEASeLGDVIKSLAvcvqKDANINCVMIAANCLEGLaKAMMGSFAryreSTVPLMLERMKERkVNVT 391
                 556666666666778888888888888888887777778888877777777888888888888888884333333334444455555555552201222 PP

                 -HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST......HHHCCHHCHHHHHHSSCCTCH...HHHHCHHHHH CS
   Adaptin_N 205 dpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne......livlavnaLvrllsskdenlr...yvaLrtllki 294
                 d      i + l + ++++  ++    +l+++l+ l+s+n+ V   t ++i +  ++++       i+ + +aL +ll+++ e+ r    v L tl+k+
  CDO70805.1 392 D-----AIGNALDAIFATTNLSD----ILPDTLPALNSKNPQVKEGTLKFISRCLSTSPtpipapQIKPLSEALASLLEDSFEGARneaAVCLGTLMKM 481
                 2.....23355666666555555....*************************888877778999999************99887773324566666666 PP

                 H CS
   Adaptin_N 295 v 295
                 v
  CDO70805.1 482 V 482
                 6 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.068
                 HHHHHHCGGCGCSSCHHHHHHHHHCCHCC CS
   Adaptin_N 231 ellesllnllqssnnaVlletvnlivela 259
                 +l+e+l++ l++sn+aV  ++ +++v+++
  CDO70805.1 801 SLIEFLKTALKNSNAAVRTSATKTLVTVK 829
                 45666666666666666666666665443 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0018
                  HHHHHHCCHCCCCST...HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX....XTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXT CS
   Adaptin_N  249 letvnlivelapkne...livlavnaLvrllsskdenlryvaLrtllkivkke....pkavqhldlkifllktdddvsirlkaldlllklvde 334 
                  let ++i +  p+     ++  + ++L   +++ +++++++aL+  ++i++      +k  +   + + ++ +d+   ir  al++l+++v++
  CDO70805.1  928 LETLQAILDQGPNKRlkpTMGEIGQVLKARVTDANKAVQMLALDIVARIATGMgkpfEKHTRFYVVPVASVLADQKAPIRAAALQTLTAMVNA 1020
                  78888898877777777789999999******99****************99755556667777888999999******************96 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 0.67
                  HHHHHT-SSHHHHHHHHH CS
   Adaptin_N  119 ikkllkdrspyvrkkAal 136 
                  i  +++d++p+vrk+A+ 
  CDO70805.1 1468 IAGTISDKDPQVRKSALA 1485
                  555678888888888864 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 1.1
                  HHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCC CS
   Adaptin_N  391 esvkdeivevirdliqkvpelheeiiekLaelle 424 
                  e+v+d+i + i  ++++ p+ +  +++k+ ++le
  CDO70805.1 1687 ETVSDDITVTISSILSNDPTRSVDALKKIQKVLE 1720
                  68999999999****9999999999999988876 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-05     0.024       4      57 ..     295     343 ..     293     359 .. 0.81
   2 ?   -2.6   0.1       2.3   5.2e+03      54     112 ..     802     854 ..     798     860 .. 0.58
   3 !    5.1   0.0      0.01        22       3      33 ..     911     941 ..     910     961 .. 0.86
   4 ?   -0.7   0.0      0.62   1.4e+03       6      28 ..    1430    1452 ..    1425    1455 .. 0.90
   5 ?   -3.2   0.0       3.7   8.3e+03       4      32 ..    2049    2078 ..    2046    2121 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
         TAN   4 alrlLssskikeRnkaldeLkhllsskrnktslsdlkdkawheifeaLfklvek 57 
                 + ++L+ssk keR++aldeL +l++  ++       + + + +++++L  +v+k
  CDO70805.1 295 LQASLKSSKWKERKEALDELLNLINATPR-----IKEASELGDVIKSLAVCVQK 343
                 5679***********************99.....44555566666666666666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
         TAN  54 lvekEkeaylkkkkssttksaaasRLskaasalRllvekavsklkrktlkalldhitql 112
                 l+e  k+a+ + + ++++++      +k   +++l++  +++ l + +  +ll +it+ 
  CDO70805.1 802 LIEFLKTALKN-S-NAAVRT----SATKTLVTVKLFAGSSIKDLLEDVNPQLLATITSE 854
                 45555555522.2.233333....45666667777777777777777777777777765 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.01
         TAN   3 ealrlLssskikeRnkaldeLkhllsskrnk 33 
                 ++l++ +s++ k++++al+ L+ +l++ +nk
  CDO70805.1 911 TILADAKSDSWKTKKEALETLQAILDQGPNK 941
                 588999*********************9984 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.62
         TAN    6 rlLssskikeRnkaldeLkhlls 28  
                  + L+s+ +k+R+  ldeL  ll+
  CDO70805.1 1430 NGLKSKVAKTRQGTLDELAGLLK 1452
                  679***************99997 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3.7
         TAN    4 alrlLssski.keRnkaldeLkhllsskrn 32  
                  +++++ss++     +++++eL h+l+  + 
  CDO70805.1 2049 IIDHISSETTgAMHKEGITELHHYLKAYPH 2078
                  566666655524578899999999988766 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.45     1e+03       4      33 ..     651     680 ..     649     714 .. 0.79
   2 ?   -3.8   0.0       6.5   1.5e+04      38      71 ..     799     832 ..     782     846 .. 0.72
   3 ?   -2.9   0.0       3.3   7.4e+03       4      33 ..     912     941 ..     910     976 .. 0.71
   4 ?    6.1   0.0    0.0053        12       7      29 ..     998    1020 ..     994    1051 .. 0.87
   5 ?   -3.0   0.0       3.7   8.2e+03       7      25 ..    1471    1489 ..    1466    1517 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.45
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkske 33 
                   +dl dp   vr  +l ++++ ie   +e
  CDO70805.1 651 FATDLGDPNWKVRLAALEEMTTWIEGAATE 680
                 57899*******************988733 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.5
     RTP1_C1  38 iekilkllleaLkdedsYvYLnaikgLvaLadvf 71 
                 ++++++ l++aLk+++  v  +a k+Lv++  + 
  CDO70805.1 799 LRSLIEFLKTALKNSNAAVRTSATKTLVTVKLFA 832
                 5678888888888888888888888887765544 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.3
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkske 33 
                 +l+d +++   ++ ++l +L+ ++ +  ++
  CDO70805.1 912 ILADAKSDSWKTKKEALETLQAILDQGPNK 941
                 678888999999999999999998887544 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0053
     RTP1_C1    7 dlqdpllpvrahglvlLrkliek 29  
                   l d+ +p+ra +l++L+ ++++
  CDO70805.1  998 VLADQKAPIRAAALQTLTAMVNA 1020
                  689****************9986 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 3.7
     RTP1_C1    7 dlqdpllpvrahglvlLrk 25  
                   ++d+ + vr  +l  L++
  CDO70805.1 1471 TISDKDPQVRKSALAVLSE 1489
                  6899999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.47
# Mc/sec: 14177.27
//
Query:       CDO70806.1  [L=772]
Description: hypothetical protein BN946_scf184798.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-10   39.2   0.0    9.1e-09   35.0   0.0    2.3  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.1e-13   9.1e-09       6     134 ..      37     263 ..      32     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 5.1e-13
  Acyltransferase   6 glenlpekgpailvaN.Hqsy.lDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR......................... 72 
                      g  n+p++gp+i+va  H+   lD+ll+   ++++ g++ + +ia+k++++ +++gf++r +  i++ R                         
       CDO70806.1  37 GAFNIPRQGPVIFVAApHNNQfLDPLLIYREVHRETGRHVRSLIAAKSMQR-KVIGFFARIMASIPVFRavdyampgtglvtisdedprlligh 129
                      66699*******9975499999**********7777988999999999888.****************************************** PP

  Acyltransferase  73 ...................................................................ksnaraagsleniselleegklvviFP 99 
                                                                                             ++++ +e++ ++l  g  ++iFP
       CDO70806.1 130 gtrftteftpkmqvllprnvgsgvaevvevisdtelrlrkefpgtpklrerikeiqatgqegvtfkrLPFVDQHEMYEHVYQCLTDGGAICIFP 223
                      ***************************************999999999999999999999999998755666778889999999999******* PP

  Acyltransferase 100 EGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                      EG+    + llp k+G+  +a+ a+       v ivPv++
       CDO70806.1 224 EGGSHDRTDLLPLKAGVSLMALGAMannpdLRVKIVPVGL 263
                      *********************9999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5009.75
//
Query:       CDO70807.1  [L=249]
Description: hypothetical protein BN946_scf184798.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-46  156.8   0.0    7.5e-46  156.5   0.0    1.1  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
      0.058   13.1   0.0      0.075   12.7   0.0    1.2  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   8.4e-50   7.5e-46       3     209 .]       1     233 [.       1     233 [. 0.87

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 8.4e-50
                    HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEE......EEETT CS
  Peptidase_M24   3 irkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpndrvlkegdlvlidag......aeydg 87 
                    +r+++r+a+++l+ +++ i+pg+t++e++a+++++t+ r g      ++  fp++v++++n+ ++h++p++r+l+egd+++i            dg
     CDO70807.1   1 MRNVCRLAREVLDIAAASIRPGITTDEIDAIVHQATIDR-GaypspLNYRNFPKSVCTSVNEVICHGIPDKRKLQEGDIINIGTVsppgykMAADG 95 
                    8************99999***************996655.559999************************************8652211114556* PP

                    EEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TT CS
  Peptidase_M24  88 yasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeG 181
                    y++D   T+ vG+ +++ ++l++++++++++aik++kpG+ +++++++++ +++++g  ++++ ++GHg+   +h   p+v++  +++   ++++G
     CDO70807.1  96 YHGDLNETYPVGRVDDDSKRLMRTARQCLDEAIKLCKPGALFRDLGKTIEPIARANGC-SVVRTYCGHGINDLFHCA-PNVPHyaKNKAVGTMKPG 189
                    ****************9*****************************************.999*************98.99987655558899**** PP

                    BEEEEEEEEEEETTT.................EEEEEBEEEEEES CS
  Peptidase_M24 182 mvftiEpgiyfapge.................ggvriedtvlvte 209
                    m+ftiEp+i     +                  ++++e+t+l+te
     CDO70807.1 190 MCFTIEPMIN-LGHWdlehwpddwtavtidgkRSAQFEETLLITE 233
                    *******777.3322223334444666666637***********7 PP

>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.3e-06     0.075     147     189 ..      45      89 ..      15     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.3e-06
                    EEEEEEG.GGTTTSHHHHHHH.HHHHH-B-TT-EEEEEES..... CS
  FAA_hydrolase 147 evqdsnt.kdmifspaeliah.lsagltLepGdliltGTpsgvga 189
                    +++  n+ k   +s+ e+i h +   ++L+ Gd+i  GT+s +g 
     CDO70807.1  45 PLNYRNFpKSVCTSVNEVICHgIPDKRKLQEGDIINIGTVSPPGY 89 
                    5566666678899***************************75443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1926.33
//
Query:       CDO70808.1  [L=385]
Description: hypothetical protein BN946_scf184798.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-22   77.9   0.5      2e-13   50.3   0.1    3.1  3  FAD_binding_3  FAD binding domain
    0.00098   18.3   0.0       0.62    9.0   0.0    2.1  2  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.055   12.5   0.0      0.096   11.7   0.0    1.4  1  SE             Squalene epoxidase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00032       1.9      61     120 ..      15      76 ..       9      84 .. 0.75
   2 !   16.2   0.0   8.1e-07    0.0048     152     179 ..      85     112 ..      78     136 .. 0.80
   3 !   50.3   0.1   3.3e-17     2e-13     283     324 ..     254     296 ..     250     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00032
                    HHHHHSEECCCCEEEEEEECCCC.CEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHT.E CS
  FAD_binding_3  61 rilaegapnelmgealynelsdt.pkaradlelesspervtvypqteleriLvehaeerg.l 120
                    ++ a +++++++g++ + +  ++     a l   +++++v ++pq+ +e+iL e+ + +g  
     CDO70808.1  15 NLNASASSRKISGTVIQSKRARIeTATFAPLAKYTKYPHVFAIPQHVTEKILGEAVQDHGlS 76 
                    45667778888888888884444444444555569********************9999944 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 8.1e-07
                    EEEEEEEEE--GTT-HHHHHHTGGEEEE CS
  FAD_binding_3 152 tvrakYlvGaDGgrStvrktlgiefege 179
                     +ra+ +vGaDG+rS vr++++i++  +
     CDO70808.1  85 VLRARVVVGADGARSVVRESAKINRADP 112
                    589******************9986544 PP

  == domain 3  score: 50.3 bits;  conditional E-value: 3.3e-17
                    ET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTT CS
  FAD_binding_3 283 kg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkG 324
                    +g  v l+GDAaH+hpP gGqG+N++++Dav La  La+ l+ 
     CDO70808.1 254 EGgPVVLIGDAAHVHPPIGGQGMNLGVRDAVRLAPVLAQYLRS 296
                    5559***********************************9984 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0001      0.62     114     145 ..      71     101 ..      60     147 .. 0.86
   2 !    7.3   0.0   0.00035       2.1     258     316 ..     258     323 ..     231     362 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0001
  Lycopene_cycl 114 eeeageslvvleggrkirarlvvdarglaslk 145
                    +++ g s vv e+g+ +rar+vv a g+ s  
     CDO70808.1  71 QDH-GLSNVVFEDGHVLRARVVVGADGARSVV 101
                    344.589********************76655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00035
  Lycopene_cycl 258 vlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres.......slsarawatlwprerkrqr 316
                    v+ iG aa +  P  G  +   ++ a +la ++a++lr+        +++  ++ + w++er+ + 
     CDO70808.1 258 VVLIGDAAHVHPPIGGQGMNLGVRDAVRLAPVLAQYLRSTsltgsplNADVDEPMERWAEERRARG 323
                    8889999998888889999999999999999*******8889888888888888888888876543 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05     0.096     132     167 ..     258     293 ..     245     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.6e-05
          SE 132 lillGDalnmRHPltggGmtvalnDivllskllkpl 167
                 ++l+GDa  +  P+ g Gm  +++D+v l+ +l + 
  CDO70808.1 258 VVLIGDAAHVHPPIGGQGMNLGVRDAVRLAPVLAQY 293
                 899*******99999***********9888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2695.91
//
Query:       CDO70809.1  [L=608]
Description: hypothetical protein BN946_scf184798.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-08   33.3   0.1    7.1e-07   29.2   0.0    2.8  3  ANAPC5    Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.9e-11   7.1e-07      13      90 ..     207     282 ..     196     283 .. 0.88
   2 ?   -0.7   0.0     0.084   1.5e+03      39      70 ..     459     490 ..     449     511 .. 0.75
   3 ?   -1.5   0.0      0.15   2.7e+03      42      70 ..     502     528 ..     476     533 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.9e-11
      ANAPC5  13 dYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghneeAvkaleeairlArenkDkscLalalawlarl 90 
                 d + a + L r F    ++ ++s     q a+Lnla++ +   +  +  k+leea+++Ar  +D+++L+++ + l rl
  CDO70809.1 207 DSNIANEGLRRFFEQRFHEGSDS--GLRQHAMLNLARMYYLRREVVACRKTLEEAVTTARTAGDNATLQHCTSLLHRL 282
                 55668899999**9999999999..67799******************************************999876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.084
      ANAPC5  39 syqyalLnlaslhadfghneeAvkaleeairl 70 
                  y++a++ la +  +fg  +   + l e+   
  CDO70809.1 459 LYRTAVVMLADVGLEFGMTKWCRRILDEVMPQ 490
                 6999************9999888888887655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.15
      ANAPC5  42 yalLnlaslhadfghneeAvkaleeairl 70 
                 yal  la+    +   + + +al+e+ir 
  CDO70809.1 502 YALYTLARC--VIAAGDSSAEALRESIRY 528
                 555555543..344556788999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3972.24
//
Query:       CDO70810.1  [L=170]
Description: hypothetical protein BN946_scf184801.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1281.97
//
Query:       CDO70811.1  [L=313]
Description: hypothetical protein BN946_scf184801.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-05   24.1   0.2    9.9e-05   22.4   0.0    2.0  2  HNH_2     HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.41   7.4e+03      14      19 ..     104     109 ..     103     151 .. 0.57
   2 !   22.4   0.0   5.5e-09   9.9e-05       1      71 [.     163     267 ..     163     268 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.41
       HNH_2  14 aAHIiP 19 
                 ++HIi 
  CDO70811.1 104 VSHIIS 109
                 567776 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 5.5e-09
       HNH_2   1 Cvitg.iddp...............slleaAHIiP...............wslssffndl.....ilnrfeigrillekgstidspsNgllLspdiHkl 63 
                 C+++g +dd                ++++++HI+P                + ss+++ l     +  +  + +     g + ++ +N l+L  ++H l
  CDO70811.1 163 CMVSGkVDDNseragltqrlpnemiTVTQCCHIFPdaleavsparhgdkeQAVSSVWTFLdrfgfQDVC--KELMGATAGFNPHHLENILTLEINAHVL 259
                 9999974444667778888889885589*******7777777777776664444444432455542222..2555678899****************** PP

       HNH_2  64 Fdqflfaf 71 
                 Fd+ ++ f
  CDO70811.1 260 FDRLDLWF 267
                 **987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2115.18
//
Query:       CDO70812.1  [L=540]
Description: hypothetical protein BN946_scf184801.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-58  196.7   0.0    7.3e-58  196.1   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
      1e-24   86.9   0.0    2.1e-24   85.9   0.0    1.5  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.034   14.0   0.1        2.2    8.1   0.0    3.4  4  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   1.2e-61   7.3e-58       5     250 .]     290     528 ..     289     528 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 1.2e-61
                    EEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE..... CS
  FAD-oxidase_C   5 ravalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvlvaq 100
                    ++va+v fp++++a +av e++ +g+++  +el d++ +++++a+       +++e+  l+++f+g+ +  ++e +   v +i  ++g++ + +a+
     CDO70812.1 290 TNVAVVQFPDVRSATEAVIEVVNSGVGIQCVELCDDQFMRATNAYGMS--TRKWPEKDSLFFKFQGPTPRSLQETAD-IVKKITAKHGGTGFSLAR 382
                    589******************************************999..778888889*********999999999.****************** PP

                    .....ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHHHHHH CS
  FAD-oxidase_C 101 deaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklvdevv 196
                    +++ea  lw  Rk+al   ++++  +g   +s+D++vP+srl+dlv  +k+ l+++gl+ +++gH+gdgn+h ++lf  ++e+e e+a+++vd++v
     CDO70812.1 383 NDKEAHDLWMDRKNALY--SSLAILPGARGWSTDVCVPISRLPDLVYGTKKDLEEHGLVSTIVGHVGDGNFHALLLF--RNEEELEAAHAAVDRMV 474
                    *****************..9999******************************************************..678************** PP

                    HHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 197 dlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    ++a++l+G+++gEHGvG+ k+ayl++e ge +++lm+ iK+a+DP +++NPgk+
     CDO70812.1 475 KRAIALDGTCTGEHGVGIGKRAYLYEELGEGTVELMKTIKKAIDPLNLFNPGKL 528
                    ****************************************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   3.5e-28   2.1e-24       1     113 [.     166     280 ..     166     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 3.5e-28
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC..SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav..atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgs 94 
                    p++vv+p+s+++v++++++a ++++pv++++g +sl g+    + gg+ +dls++++i+ei e++  ++ ++G ++ dl+e+l++kg  l + p++
     CDO70812.1 166 PSVVVFPSSTDDVVKIVKIAVKYKMPVIPYSGATSLEGHFRapTVGGICVDLSQMDKIIEIHEADSDVVCQPGLRWMDLNEHLQKKGIPL-FFPLD 260
                    789**********************************8887799***************************************8887433.34555 PP

                    TCGS.BHHHTTTTT-EETTE CS
  FAD_binding_4  95 gipg.tvGGaiatnagGygs 113
                      pg t+GG+++t+ +G  +
     CDO70812.1 261 PAPGaTIGGMLSTGCSGIVV 280
                    555449*********99765 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.097   5.8e+02      46      62 ..     120     136 ..     119     140 .. 0.85
   2 ?    8.1   0.0   0.00037       2.2      23      57 ..     277     308 ..     275     316 .. 0.84
   3 ?   -2.7   0.0      0.94   5.6e+03      27      43 ..     362     378 ..     361     378 .. 0.87
   4 ?   -0.4   0.0      0.17     1e+03      39      61 ..     450     472 ..     435     476 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.097
                 ESSHHHHHHHHHHHTTE CS
       RRM_1  46 FeskedAekAlealngk 62 
                 + s++d +kA+++l  +
  CDO70812.1 120 YGSPDDFAKAIDELRST 136
                 7899********99765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00037
                 SCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1  23 GpiksiklvrdetgkskgfafVeFeskedAekAle 57 
                 G +++i+l +     ++++a V+F++ ++A++A+ 
  CDO70812.1 277 GIVVTIRLAPV---LPTNVAVVQFPDVRSATEAVI 308
                 56777777776...8899***************86 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.94
                 EEEEEEETTTSEEEEEE CS
       RRM_1  27 siklvrdetgkskgfaf 43 
                 ++++v++ t k+ g++f
  CDO70812.1 362 TADIVKKITAKHGGTGF 378
                 68999999999999998 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.17
                 EEEEEEEESSHHHHHHHHHHHTT CS
       RRM_1  39 kgfafVeFeskedAekAlealng 61 
                 + +a   F ++e+ e+A +a+++
  CDO70812.1 450 NFHALLLFRNEEELEAAHAAVDR 472
                 56788889999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3817.25
//
Query:       CDO70813.1  [L=250]
Description: hypothetical protein BN946_scf184801.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   43.8   0.8    3.2e-11   42.8   0.8    1.5  1  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.8   1.8e-15   3.2e-11       1      60 [.      44     103 ..      44     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.8e-15
     PQ-loop   1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpps 60 
                 ls++lg+ ++v+ ++ ++PQ++++   +S+ GlS+ +++l++l++ + l+y++ ngfp+s
  CDO70813.1  44 LSKGLGLGIVVGGSIMKVPQLLLIVSARSARGLSLTSYVLETLSYAITLAYSYRNGFPFS 103
                 6899*****************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2064.60
//
Query:       CDO70814.1  [L=463]
Description: hypothetical protein BN946_scf184801.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-48  164.2   6.4    3.5e-48  163.4   3.1    2.5  3  eIF3_N     eIF3 subunit 6 N terminal domain
    1.5e-09   38.3   0.0    3.7e-09   37.0   0.0    1.7  1  PCI        PCI domain
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.32   11.1   0.1    1.6  1  PARP_reg   Poly(ADP-ribose) polymerase, regulatory domain
       0.17   10.0   0.0       0.31    9.1   0.0    1.3  1  MSP1b      Major surface protein 1B
       0.18   11.6   0.5       0.41   10.5   0.5    1.6  1  RIH_assoc  RyR and IP3R Homology associated


Domain annotation for each model (and alignments):
>> eIF3_N  eIF3 subunit 6 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   3.1   9.7e-52   3.5e-48       1     133 []       5     137 ..       5     137 .. 1.00
   2 ?    1.2   0.0      0.13   4.8e+02      77     115 ..     322     360 ..     288     368 .. 0.81
   3 ?   -4.0   0.0         5   1.8e+04      38      56 ..     390     409 ..     379     415 .. 0.69

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 9.7e-52
      eIF3_N   1 DLtskllpyLDrHLvfpLLeflsekeiydeeellkaklellkkTnmvdyaadlykelegeeevpeelekkreevleeleeleeeaekvlelledeevvs 99 
                 DLt++++py DrHLvfpLL +l+e+ei++ e++++a++el k+Tnmvdya +l ++l++++evp+e+ +kre+++++ e+l++ea++vl+++e++ev++
  CDO70814.1   5 DLTTTIIPYCDRHLVFPLLAHLAENEIFPVEQVQTAQYELAKETNMVDYAVSLFQQLHPDQEVPAEFGEKREKAVSTNERLQQEAQAVLDVIEKPEVAQ 103
                 9************************************************************************************************** PP

      eIF3_N 100 nlrsdkkqnlefLkeehgitpemidalykfakFq 133
                 +lr+dk+qnl+fL +++++t ++i+aly+f+kFq
  CDO70814.1 104 ALRQDKNQNLQFLRDHYNVTLDQITALYNFGKFQ 137
                 *********************************8 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
      eIF3_N  77 eleeleeeaekvlelledeevvsnlrsdkkqnlefLkee 115
                  +e+ ++e +k+ +++ ++ +    r+d + n ++L +e
  CDO70814.1 322 DFEAAQKELSKAETVVANDFFLGDFREDFMDNARYLISE 360
                 578889999999999999999999999999999999765 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5
      eIF3_N  38 lellkkTnm.vdyaadlyke 56 
                 ++l+++T m +d+ +dl+k+
  CDO70814.1 390 VNLIRETRMgADAKIDLEKN 409
                 67888888844666666655 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0     1e-12   3.7e-09       4     104 ..     311     414 ..     308     415 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1e-12
                 HHHHHHHH.HTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSS..EEEETTTT CS
         PCI   4 sdllkalr.sgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeir..akidqesg 99 
                 +++lk+l+ + +++++++el + e  + +d +l +  e++ +++r    + +++i+++i++ +l++ l+ls de Ek++v+lIr+ ++   akid e+ 
  CDO70814.1 311 TQFLKELYvEFDFEAAQKELSKAETVVANDFFLGDFREDFMDNARYLISEAYCRIHQRIDIGDLSERLNLSRDEGEKWIVNLIRETRMGadAKIDLEKN 409
                 555655550566***********999999***********************************************************6559***9999 PP

                 EEEEC CS
         PCI 100 ivvfk 104
                 +++++
  CDO70814.1 410 VIEIH 414
                 99887 PP

>> PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   8.9e-05      0.32      82     136 .]      67     120 ..      39     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.9e-05
    PARP_reg  82 IPhdfgrkrppvidteeelkkkle.llesLsdievaskllkaekeekeehpldrhY 136
                 +P +fg kr + ++t+e l+++++ +l+ +++ eva+ l ++++++ +   l +hY
  CDO70814.1  67 VPAEFGEKREKAVSTNERLQQEAQaVLDVIEKPEVAQALRQDKNQNLQ--FLRDHY 120
                 899*****************8776267889999****99999987764..565555 PP

>> MSP1b  Major surface protein 1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   8.7e-05      0.31     240     264 ..     177     201 ..     168     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 8.7e-05
       MSP1b 240 chkwsdaleeieslrtaidakaeqq 264
                   kw+ alee++slr aida++   
  CDO70814.1 177 TGKWDVALEELNSLREAIDARTPSM 201
                 579*****************98655 PP

>> RIH_assoc  RyR and IP3R Homology associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00011      0.41      10      70 ..      19      93 ..      16     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
   RIH_assoc 10 lLrfLqllceghnselqnylreQkdnktsynlvseivdllenlskat..............elnskslelmlqvl 70
                ++ +L++l+e+    + +    Q++  ++ n+v   v+l+++l+ ++              ++n++  + ++ vl
  CDO70814.1 19 VFPLLAHLAENEIFPVEQVQTAQYELAKETNMVDYAVSLFQQLHPDQevpaefgekrekavSTNERLQQEAQAVL 93
                6889***************************************98876777777666666644444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3079.08
//
Query:       CDO70815.1  [L=1010]
Description: hypothetical protein BN946_scf184801.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-96  321.4   0.0    9.4e-96  320.9   0.0    1.2  1  HECT          HECT-domain (ubiquitin-transferase)
  ------ inclusion threshold ------
      0.096   12.0   0.1       0.23   10.7   0.0    1.7  2  V-ATPase_H_N  V-ATPase subunit H
       0.11   12.3   1.0       0.48   10.3   1.0    2.2  1  IQ            IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.9   0.0   1.6e-99   9.4e-96       2     307 .]     691    1010 .]     690    1010 .] 0.95

  Alignments for each domain:
  == domain 1  score: 320.9 bits;  conditional E-value: 1.6e-99
                  HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS......HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT..................-.---TC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxx RF
        HECT    2 llskelldpklglfeeesedsgtlypkpssseee..llklfeflGkvlGkaiyeeilldlpfsraflkfllg..................eekitle 78  
                   l+ke++d++ gl+   +++++ lyp p s+ +e   l  ++f+G++lGka+ye+il+d+ f+ +fl ++                    + +  l+
  CDO70815.1  691 NLCKEVFDTDRGLWL--ANKKNELYPAPHSYATEphSLAWYRFIGRILGKALYEGILVDVAFAGFFLAKVHIllldilgvsltylgqwlgK-QSWLD 784 
                  69************7..78888899999998888997799***************************997667789**********99954.8889* PP

                  HHHHH-HHHHHHHHHHH..HS-GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   79 dleeidpelakslkellslesnteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipska 174 
                  dl+++dpel++ l  l++++ +    edl+L+Ft+ e+ +g ++ti+LipnG+nipVt en+ +Yi l+++y+l k+++kq +af +G+se+i+ k+
  CDO70815.1  785 DLQSLDPELYQGLIFLKHYQGD---PEDLSLNFTVAEEeFGVTKTIDLIPNGSNIPVTRENRLQYIYLVAHYRLTKQIKKQSNAFFEGLSEIIDPKW 878 
                  *****************77443...599******99999********************************************************** PP

                  HTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..-TTS--E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  175 lklfdaeelellisGedelidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierkskedetrLPt 271 
                  l++f+++el+ l+ G d  id++dlr++t+y+g y+++++tie++w+++k+f+++e+r++L+FvT++sr Pl Gf+el+p+f i+  +  de+rLPt
  CDO70815.1  879 LRMFNQQELQILLGGVDTPIDIDDLRAHTQYGGLYDDHEPTIEMFWSVVKTFNQDERRKLLRFVTSCSRPPLLGFKELNPNFAIRDAT-GDENRLPT 974 
                  *****************99******************************************************************977.9******* PP

                  EEGGGTEEEE---SSHHHHHHHHHHHHHHHH--XXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  272 ahTCfnlLklpdYsskeilkekLltAieetegFels 307 
                  a+TC+nlLklp+Y+s  +l+ekLl+Ai++++gF+ls
  CDO70815.1  975 ASTCVNLLKLPRYKSPHVLREKLLQAINSNAGFDLS 1010
                  **********************************96 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         1   6.2e+03     287     305 ..      64      81 ..      63      82 .. 0.83
   2 ?   10.7   0.0   3.8e-05      0.23      38     141 ..     103     215 ..      86     297 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1
  V-ATPase_H_N 287 llkllenLeerkfsDedit 305
                   +lk++++L +r f D+dit
    CDO70815.1  64 ALKQVRQLLRRTF-DQDIT 81 
                   699********99.66775 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3.8e-05
  V-ATPase_H_N  38 dkakkeqraklldedgpqyvklll....nLlskl...skedtlqyiLvlidDllsedksrvelflslakkeeqd.pwkpflk.llnrqddfivllal 125
                    ++++++r ++l++++p+  +ll     +Ll+++    ++++ +  L+++  lls++++rv++ + l  +++++ + + +l+     + ++i  + +
    CDO70815.1 103 SSVVSSSRPDVLSQSDPSWLTLLQkvslRLLRSVaadPRSQYAEAHLRVLTTLLSSNPHRVQIAKYLVSHRFYSiIRDAILQlPVPAKPSPILAPLA 199
                   5666778888998888877666555555******99999999999**********************999999977777777556666888888888 PP

  V-ATPase_H_N 126 rllakllvqgkkksnk 141
                   +ll+  l++++  s  
    CDO70815.1 200 TLLTAPLAYQDILSGS 215
                   8888888888877766 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0   8.1e-05      0.48       2      20 ..      50      68 ..      49      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.1e-05
                HHHHHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaRkry 20
                ++a++IQ +wRG  a k+ 
  CDO70815.1 50 DSATRIQHWWRGKIALKQV 68
                79***********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6909.07
//
Query:       CDO70816.1  [L=325]
Description: hypothetical protein BN946_scf184801.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2247.24
//
Query:       CDO70817.1  [L=187]
Description: hypothetical protein BN946_scf184801.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   74.2   0.2    9.6e-20   71.3   0.0    1.9  2  HRI1      Protein HRI1


Domain annotation for each model (and alignments):
>> HRI1  Protein HRI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   5.3e-24   9.6e-20      10     111 ..      36     136 ..      30     142 .. 0.86
   2 ?    0.7   0.2     0.019   3.5e+02     211     230 .]     164     183 ..     149     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 5.3e-24
                 SSS--.B..--B--EEE-T--EEEEEEBSS--CC.CTTS-....EEEEEEE-GGGEEEE-SSE.E.EEEE--SEEHHH...............HCT..T CS
        HRI1  10 wppeepsEptsTlvLtspsgrfVDiRilkepesekeeepepl..leWafaGtststsettegelvshstfthwiDsrv....eeaaaDeGdmyelp..s 100
                 ++p+e+sEptsT+vLt+p +rfVD+R+l +p+ +++   + l  leW+faG +  t++        h ++ h+i+sr+    +++ +DeGd+ ++p   
  CDO70817.1  36 LIPDEASEPTSTVVLTTPGRRFVDLRFLPAPHPSASPVVP-LssLEWGFAGRAVGTPA--------HGKWIHEISSRTahpeRDGEPDEGDIAPHPtlP 125
                 789*************************887665544333.347*******9987765........69**********998777************988 PP

                 S-EEEEEEE-. CS
        HRI1 101 gltlEkGemvn 111
                 + +lE+G+m  
  CDO70817.1 126 DVALERGRMXX 136
                 99*******85 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.019
                 TT--TT-EEEETTEEEEEEE CS
        HRI1 211 eelevgdtvevgglkWevvE 230
                 +e+++g tv+ ++++W+v E
  CDO70817.1 164 SEVDEGGTVSSDDAVWDVRE 183
                 578899***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1446.77
//
Query:       CDO70818.1  [L=147]
Description: hypothetical protein BN946_scf184801.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1071.65
//
Query:       CDO70819.1  [L=90]
Description: hypothetical protein BN946_scf184801.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 706.54
//
Query:       CDO70820.1  [L=348]
Description: hypothetical protein BN946_scf184801.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.0   0.0       0.18   11.2   0.0    1.9  2  Asp       Eukaryotic aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.9e-06      0.18      87     126 ..       3      41 ..       1      56 [. 0.78
   2 ?    2.2   0.0    0.0055        99     163     251 ..      40     126 ..      35     159 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.9e-06
                 EEEEEEEEEESSHHHTTSSSSEEEE-S-GGGSCGGSCCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  87 nqefgeatkepgstflaakfdGiLGlgfkeisveeatpvf 126
                 +q f  +t++ ++ +++ + dG+LGlgf+++s++ +   +
  CDO70820.1   3 GQYFSAVTSKASE-MTQDPEDGLLGLGFTALSSMMQLHLY 41 
                 6889999998885.77778************998866555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.0055
                 GEEEEEEEEEESSTSSTEEEEEEEEETTEEEEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 163 kykGsltyvpvtskgywqielesvtvggktvlcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisft 251
                  y+G + y ++++++ ++  + +   ++ +  + ++++    +G++++a++ siv+k a+ +  ++s +++e+  +     s p++sf+
  CDO70820.1  40 LYSGPVEYHDIMTDEGYRKLVAEARCSTAAP-SRRTSRRSSTSGATFIAAEPSIVDKAASIAA-SASGYAEESGCYTFPRASVPEVSFN 126
                 6889999999999888888888888887777.66666667789***********998766443.3333322222222222345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2453.81
//
Query:       CDO70821.1  [L=312]
Description: hypothetical protein BN946_scf184801.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-31  108.1   0.0    8.2e-31  107.6   0.0    1.2  1  Mit_KHE1  Mitochondrial K+-H+ exchange-related


Domain annotation for each model (and alignments):
>> Mit_KHE1  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   4.6e-35   8.2e-31       1     158 [.       2     158 ..       2     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 4.6e-35
    Mit_KHE1   1 rlillpitt.........krsliYcekseeilskssaskaeskekledkltnkaaktwaklekaeeg.wkkkivelgeklldripyeElaLksipsksa 89 
                 r+i+lp+t           ++l+Y+++          ++++++ ++ +++ +kaa++wa+l+ka+eg wk+k + +ge+l+dr+++eElaLks++++  
  CDO70821.1   2 RIIALPLTPpckpvdgrpAEHLTYYHFIT-------PAENAKTASWSKWAATKAADLWAGLGKAPEGtWKRKAFLYGERLVDRLDFEELALKSLDPSLG 93 
                 89******99******998*******997.......233445689**************************************************7333 PP

    Mit_KHE1  90 kelesekekkkkekeelksiellyPssllseekvleelrklaeereelhkkrlilcllgiPltlpfalv 158
                  +l++    ++ke++   +i+l+yP+s++s+   l +l++l+e+r+++hkk ++++l++ Plt+pfal+
  CDO70821.1  94 PRLSH--IVHSKETKPPVHIPLIYPPSACSS--PLPHLQSLVEKRTPRHKKGFWVWLAVSPLTAPFALI 158
                 34444..45555789999**********665..567********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2256.29
//
Query:       CDO70822.1  [L=515]
Description: hypothetical protein BN946_scf184801.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-31  110.0   0.0    4.9e-31  107.9   0.0    1.9  2  Pro-kuma_activ  Pro-kumamolisin, activation domain


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   2.7e-35   4.9e-31       6     142 .]      34     170 ..      29     170 .. 0.97
   2 ?   -0.8   0.0     0.097   1.7e+03      52      75 ..     412     435 ..     402     449 .. 0.86

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 2.7e-35
  Pro-kuma_activ   6 rgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqverl 100
                       +aa++  +++++gL+ +n+e l+++l dvsdpks+nyg+hl+++ev++ +ap++++++aV +wL ++ ++ + +s++++++ ++++v +++ l
      CDO70822.1  34 LRPAAATSSVELTLGLPATNIEGLHAALYDVSDPKSANYGRHLSKAEVEAFVAPKPDSVQAVNDWLAQHDVHPEVISPSGDMLRINIPVPKANAL 128
                     6789999**************************************************************************************** PP

  Pro-kuma_activ 101 lktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     l+++f  ++ ++++++l+r+ ++ +P+++ ++ ++  pt++f
      CDO70822.1 129 LGANFTVFKDQHSGTTLVRTLSVTIPDDVDSHLQFMYPTTQF 170
                     *********99*****************************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.097
  Pro-kuma_activ  52 evaelfapseeaidaVrnwLessg 75 
                      + ++fa  + + +aV ++L+  g
      CDO70822.1 412 GFSNMFARPDYQAAAVDSYLTRLG 435
                     5889****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3608.01
//
Query:       CDO70823.1  [L=289]
Description: hypothetical protein BN946_scf184801.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-51  173.0   0.0    9.6e-51  172.6   0.0    1.1  1  mRNA_triPase  mRNA capping enzyme, beta chain


Domain annotation for each model (and alignments):
>> mRNA_triPase  mRNA capping enzyme, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   0.0   5.4e-55   9.6e-51       2     219 .]      37     240 ..      36     240 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.6 bits;  conditional E-value: 5.4e-55
                   -HHHHHHHHHHHHHHHHCTCCGGCCEEEEEEEEEEEETTTSSB---SBSS-EEE-TT.CTEEEEE-B-HHHHHHHHHHHHHHHH..HTTCCCTTTEE CS
  mRNA_triPase   2 deitksvsdwiiaaldniksekrsqiEiEaklGlivdkstkeRlklpvsteaivenn.adskfesgvdedqfkelnnfLnelsrrneeenskrekvs 97 
                   de++++v+d+i+ +++n + +    +E+Eak+Gl+ d+++++Rl+lpv  e+i++ n +d +fes++  +q+k++n++Ln+l+    +  ++   + 
    CDO70823.1  37 DEFIREVADFIHFQINNRPMDLGGVVEVEAKIGLLRDRDSGQRLQLPVLVETILAPNaIDLRFESNMLPNQHKHFNKLLNNLK-TTPSLAHPSSTLR 132
                   89***************9999999*********************************9***********************98.599********** PP

                   EEEEEEEEEEEE-S-SSS--EEEEEEETTT--EEEEEEEEEEEEEEEE-TTSSSEEEEEEEEEEE-SSSHHHCTTS--SEEEEEEEEEEEECCGTEE CS
  mRNA_triPase  98 lkeskevDkfYelkkkeekskirvskdsenqevlkkieKeriadlniylPnsklDyriSinlElpvseskaklskktpvseRlkeRlSyihkksgiq 194
                   +++ + +D+fY l     ++k+rv++d++++ev ++++K r+adlniy+P+++ D+riS++lE+p           +++ +R+k+R+Sy h++  + 
    CDO70823.1 133 YQHLHLIDSFYTLD---GNVKVRVTRDEKTGEVRECVRKVRLADLNIYCPKRHADWRISVSLEVP----------GSATHTRKKDRMSYSHEE--FV 214
                   ***********997...9***********************************************..........446799************..** PP

                   EEEEEESSS.---S--EEEEEEEEEE CS
  mRNA_triPase 195 fDLtkvekt.ektkkteekyElEiEi 219
                   +DLt+v +t   + k e  +ElE+E+
    CDO70823.1 215 IDLTQVTSTaGPNAKPEILHELELEL 240
                   ******7777999************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2054.92
//
Query:       CDO70824.1  [L=430]
Description: hypothetical protein BN946_scf184801.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.8   0.1    4.1e-14   53.2   0.0    1.9  2  Fic       Fic/DOC family


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.3e-18   4.1e-14       2      95 ..     232     346 ..     231     348 .. 0.82
   2 ?   -3.3   0.0      0.99   1.8e+04       9      20 ..     398     409 ..     391     425 .. 0.52

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.3e-18
                 -SHHHHHHHHCHS-S----..............--TS--SS-S.......T..EEEE---SCCCHHHHHHHHHHHHC..HHT-S-HHHHHHHHHHHHHH CS
         Fic   2 ltledllelhrlllqdige..............eagefrdeev.......segklesalappeevpaeleelleyln..elekeeplekaaalhyefek 77 
                 lt e++++lh++l++                  + g  r+  +         + ++  ++p + v ael+ +++ +n   +++ +p+ +aa++ + f++
  CDO70824.1 232 LTIETVCHLHKILMRTNHIlavrvransmlaltHVGVTRQ--HcainvsvAGKDVKVQFCPFDSVDAELTLFCSRFNelMRQDVDPFAAAAWISHVFVT 328
                 899**********876554555555444444443355555..2679999977999**********************88888888************** PP

                 H--SSS-HHHHHHHHHHH CS
         Fic  78 iHPFaDGNgRtarlllnl 95 
                 iHPF DGNgR++rll++ 
  CDO70824.1 329 IHPFEDGNGRLSRLLASI 346
                 ***************975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.99
                 HHHCHS-S---- CS
         Fic   9 elhrlllqdige 20 
                 +lh ll+++ + 
  CDO70824.1 398 DLHTLLTKNARA 409
                 455555544432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3151.85
//
Query:       CDO70825.1  [L=428]
Description: hypothetical protein BN946_scf184801.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-85  287.3   0.0    1.3e-85  287.0   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
  ------ inclusion threshold ------
       0.22   11.7   1.0       0.42   10.7   1.0    1.4  1  Spuma_A9PTase    Spumavirus aspartic protease (A9)
        1.5    9.1   6.7        7.7    6.8   1.5    2.5  2  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.0   0.0   2.1e-89   1.3e-85       2     299 ..      73     375 ..      72     376 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.0 bits;  conditional E-value: 2.1e-89
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-T.TTSSGTT-..-E..BTT..BEE CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkv.kgkggsrh.elmyaekesrilg 98 
                 k ++  +++d++ ++++r++ri fy++ +g+ea+ +g+aaal ++D ++ +YRe gvll+rg   ++i+ ++ g   +  g +++ +++y++ke +  +
  CDO70825.1  73 KNMVQLPILDDILYNLQRQGRIVFYMTAYGEEAAIIGSAAALAPDDEVLAQYRESGVLLWRGFGYDNIMNQCFGTYlDSCGMGKQmPVHYGSKELHYHT 171
                 7789999********************************************************************977777788899************ PP

                 E-SSTTTHHHHHHHHHHHHH...HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEET CS
       E1_dh  99 gngivgaqvplvaGialaak...iegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdg 194
                 +++++++q p++aG+ +a k    +  k++a++++G+gAa++Gd+++++ la++   p++f+ +NN+++isT++++++  + +a+r+ g+g+  +rVdg
  CDO70825.1 172 ISSPLATQIPQAAGVGYALKrdpARRGKNCAVVYFGEGAASEGDFHAGMLLASTIPSPTLFIARNNGFAISTPSSEQYYGDGIAARGPGYGVHTIRVDG 270
                 ********************999888999********************************************************************** PP

                 TSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 195 nDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkkaes 293
                 nD+lavy+Avk+A++ + e+ + +l+e++tYR+g+Hs+sDd+ +yr+r+eve+ +  ++pi r++ +L ++g++s+ee+++++k++++ev+ a+kkaes
  CDO70825.1 271 NDVLAVYSAVKEARRLCIEEGRAVLVETMTYRVGHHSTSDDSFAYRPRKEVEDRKRLDNPIVRFRLFLESRGWWSKEEEEALTKRIKQEVMTAYKKAES 369
                 *************************************************************************************************** PP

                 S----G CS
       E1_dh 294 kkelep 299
                  +++e+
  CDO70825.1 370 LPKPEL 375
                 *99976 PP

>> Spuma_A9PTase  Spumavirus aspartic protease (A9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0     7e-05      0.42     108     133 ..     392     417 ..     387     425 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Spuma_A9PTase 108 kegkeelkklfekydalwqkwenqvg 133
                    ke++eelkkl++ky   w+ w+n++ 
     CDO70825.1 392 KEQREELKKLVKKYGDSWEPWKNELK 417
                    789********************875 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.3    0.0056        34       1      14 [.     341     354 ..     341     384 .. 0.89
   2 ?    6.8   1.5    0.0013       7.7       7      24 ..     393     410 ..     386     413 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0056
                      CSSSBHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLle 14 
                      rg W++eE+e L +
       CDO70825.1 341 RGWWSKEEEEALTK 354
                      577*******9976 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0013
                      HHHHHHHHHHHHHTTCHH CS
  Myb_DNA-binding   7 eEdelLleavkkhGnrWk 24 
                      e  e L ++vkk+G++W+
       CDO70825.1 393 EQREELKKLVKKYGDSWE 410
                      55689***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2962.74
//
Query:       CDO70826.1  [L=641]
Description: hypothetical protein BN946_scf184801.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.5   0.0       0.13   12.2   0.0    2.1  2  Syndecan  Syndecan domain
       0.61   10.1  12.3       0.22   11.6   0.4    3.4  3  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.067     6e+02      10      25 ..       7      22 ..       5      24 .. 0.93
   2 ?   12.2   0.0   1.4e-05      0.13       7      49 ..     264     306 ..     258     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.067
    Syndecan 10 aaviggvvvgllfail 25
                aa++g++   llfa+l
  CDO70826.1  7 AALVGCCFYYLLFAVL 22
                89************97 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.4e-05
    Syndecan   7 evlaaviggvvvgllfaillvlflvYRmrKKDEGSYaLdepkk 49 
                  v++  + g+vv+l+ + ++  f+++R + + E   +L+e+k 
  CDO70826.1 264 AVIVIAVCGGVVALIATAMVTWFVIHRRKMREEKFTKLNESKS 306
                 5677778899*****************9999998888888886 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   2.5e-05      0.22      46      95 ..     248     297 ..     235     307 .. 0.75
   2 ?    0.6   0.7     0.062   5.5e+02      34      52 ..     317     335 ..     300     344 .. 0.70
   3 ?    4.2   0.5    0.0045        41       3      41 ..     541     579 ..     539     594 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
      PRIMA1  46 aaestvsplepwwselviiiavvcaslvfllvlviicykaikrkplrkee 95 
                 a+  ++s +e    ++ +i+  vc  +v l+ + ++ +  i r+ +r e+
  CDO70826.1 248 ASLDSTSSTEHITPKIAVIVIAVCGGVVALIATAMVTWFVIHRRKMREEK 297
                 333334445666677778888889**********************9875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.062
      PRIMA1  34 pppppprllsltaaestvs 52 
                    pppr+l++ +a++ ++
  CDO70826.1 317 RASPPPRILTSVTASPISP 335
                 56799****9888776554 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0045
      PRIMA1   3 kscsktvaekvtescqeacqcrrypplpppppppppprl 41 
                 +s s + ++++++s+ +  + r++p  p p+ p p+p++
  CDO70826.1 541 RSDSDVLSHSTSQSTLRLNRFREPPLAPLPSSPLPSPNV 579
                 677888888888888899999999888999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4587.79
//
Query:       CDO70827.1  [L=93]
Description: hypothetical protein BN946_scf184801.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 667.90
//
Query:       CDO70828.1  [L=376]
Description: hypothetical protein BN946_scf184801.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-58  196.4   0.2    7.4e-58  196.1   0.2    1.1  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    4.9e-33  114.9   0.0    5.9e-33  114.6   0.0    1.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    2.9e-07   29.9   0.7    5.7e-06   25.7   0.7    2.5  1  DHQ_synthase  3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.2   1.2e-61   7.4e-58       1     355 [.      15     344 ..      15     352 .. 0.92

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 1.2e-61
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P+++++g+ a+++ +++l +lg + +l+++d  ++ k  + ++++++l+ ag++v+    + ++ + ee++++ al r+e  d+via+GGG++iDtAK 
  CDO70828.1  15 PSKYIQGPYAIQNAAKYLGQLG-NAPLLLCDDIVW-KI-AGEELVKALTGAGFKVH-RAVFGGEASREEIDRLGALGRKESSDFVIALGGGKTIDTAKT 109
                 89********************.9***********.55.89*******99999999.67889************************************* PP

                 HHHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTS.EEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeeg.eklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayv 197
                 +a  l+                   ++ ++PTta+t++++++l+v++ ++ + + +++f    +P++++vD++++ t+P+r++aa+++Da+a+ +Ea  
  CDO70828.1 110 VADDLG------------------KQVAIVPTTASTDAPCSALSVLYRPSGEfHCYTFF--DKNPNVVLVDTTVISTAPPRFLAAGMGDAIATNVEARR 188
                 ******..................579********************777766667888..68**********************************99 PP

                 H.H.......T---TTSSB--HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHH.HHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH.. CS
      Fe-ADH 198 s.k.......kanplsdalaleairliaknleravadge...dleareqmllastl.aglafsnaglgavHalahalgalfgiphglanaillpavlrf 284
                 + +         +++s a+  ++ ++++k+ ++a++  +      a e++++a+tl +gl+f+++gl+a+Ha++++++a  +  h l++++++++++  
  CDO70828.1 189 ClNspnfgggLPTEVSAAIGQKCEEILFKYGKQAYEANKahaVTPALEAVVEANTLlSGLGFESGGLAAAHAIHNGMTA-IEELHTLLHGEKVAFGT-- 284
                 96699999999999**********************97643344***********************************.5555*************.. PP

                 ........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT.-..HHHHHHHHHT-T.SGGGGS CS
      Fe-ADH 285 naeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvde.e..dldklaeaalkd.rslann 355
                         + ql+           + +++++ ++++ +++lp++++ lg+++ +  +l+++ae a++d +++ n 
  CDO70828.1 285 --------ICQLVLD-------GVPTSELDRYIDFMLSVDLPVNFELLGIPNvKdeELRRVAELACADgETIWNL 344
                 ........8888888.......899************************98864679***********6665544 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   9.9e-37   5.9e-33       4     250 .]      22     281 ..      19     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 9.9e-37
    Fe-ADH_2   4 egaleklgellkelelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvpy 102
                 + a+++ +++l +l++  + l+ d  ++k+age++ ++l+ ag kv+ ++ + +ea+ ee+ +l +  r+++ d+v+a+GgG+ iD+ak v+  l++++
  CDO70828.1  22 PYAIQNAAKYLGQLGNAPL-LLCDDIVWKIAGEELVKALTGAGFKVH-RAVFGGEASREEIDRLGALGRKESSDFVIALGGGKTIDTAKTVADDLGKQV 118
                 5688999999999987665.567889********************9.445899********************************************* PP

    Fe-ADH_2 103 vsvpTaaSvDGfaspgaslvvd.gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytala.dwklan.......evseplaklsaamvqe 191
                 ++vpT+aS D  +s  + l++  g+   +    + P  v++D++v+++AP r+la+G+GD+++  +      +  n       evs+ + ++  +++++
  CDO70828.1 119 AIVPTTASTDAPCSALSVLYRPsGEFHCYtFFDKNPNVVLVDTTVISTAPPRFLAAGMGDAIATNVEARrCLNSPNfggglptEVSAAIGQKCEEILFK 217
                 ********************99766555555679****************************98775552333334777888899*************9 PP

    Fe-ADH_2 192 aaeklvedkke...tealeelleal.alsgigisrpaSGsEHliSHaldmlal.kqalHGeqVG 250
                   +++ e++k    t ale+++ea  +lsg+g+++ +  + H i   + ++++ +  lHGe+V+
  CDO70828.1 218 YGKQAYEANKAhavTPALEAVVEANtLLSGLGFESGGLAAAHAIHNGMTAIEElHTLLHGEKVA 281
                 9999998555323377779999985599*****9999999999988887775546899****96 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.7   9.6e-10   5.7e-06      30     244 ..      91     316 ..      79     333 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 9.6e-10
                   TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE-..--SEEEEEGGGGGGS-HHHHHHHHHHHHHHH CS
  DHQ_synthase  30 RksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafa..qPkavlidlevLktLperelraGlaEviKya 124
                    ++ +ialGGG   D a  vA  +  G ++  vPtt  a  D+   +   +  p g     +f   +P++vl+d++v++t p+r l+aG++++i + 
    CDO70828.1  91 SSDFVIALGGGKTIDTAKTVADDL--GKQVAIVPTT--ASTDAPCSALSVLYRPSGEFHCYTFFdkNPNVVLVDTTVISTAPPRFLAAGMGDAIATN 183
                   5789*****************987..6677779**9..899*****************999996347***************************987 PP

                   H.....HT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHH.HHHHHHHCCTTTTGGGG...........GGTTHHHHHHHHHHHTTTTS-HHHHH CS
  DHQ_synthase 125 l.....ikdeelfelleenaeallkeeeeealeeliarsiev.kaevveeDekekglral...........LnlGHtigHaiEallgyekllHGeaV 204
                   +     ++  ++   l ++ +a + ++ ee l ++ +++ e+ ka+ v+   +   + ++           L   H i   + a+ + ++llHGe V
    CDO70828.1 184 VearrcLNSPNFGGGLPTEVSAAIGQKCEEILFKYGKQAYEAnKAHAVTPALEAVVEANTllsglgfesggLAAAHAIHNGMTAIEELHTLLHGEKV 280
                   6222214445555556666655555333333333334444331333333322211111111222111122244444444444555555999****** PP

                   HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTT CS
  DHQ_synthase 205 aiGmvlaaelseklgllkkeeverllkllkklglpvslke 244
                   a+G ++++ l      ++++e++r+++++ +++lpv+++ 
    CDO70828.1 281 AFGTICQLVLD----GVPTSELDRYIDFMLSVDLPVNFEL 316
                   *******9988....55679999***********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2718.98
//
Query:       CDO70829.1  [L=456]
Description: hypothetical protein BN946_scf184801.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-49  165.8  18.1    4.1e-25   88.3   3.8    2.3  2  MatE      MatE
  ------ inclusion threshold ------
      0.017   15.2   0.1      0.039   14.1   0.1    1.5  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   3.8   4.5e-29   4.1e-25       5     140 ..      16     151 ..      12     174 .. 0.90
   2 !   83.3   6.4   1.6e-27   1.5e-23       1     159 [.     226     387 ..     226     389 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 4.5e-29
        MatE   5 enllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslft 102
                 +  ++++++++++l++grlg+++l+a ++al++++++++ ++lg  tal+tl++qa+  ++++ ++  l+++++ll ll +++a+l ++f+e+ l +++
  CDO70829.1  16 STPFQNSIQFVSVLVTGRLGPNELSASAFALMLAMVTGWcVALGGTTALDTLASQAFTGGDRQTVSIHLQRCVVLLWLLFVLVAIL-WAFAEPVLLFLG 113
                 56689*********************************************************************************.************ PP

        MatE 103 qdeevlelakrylrililgipalalqlvlsgilrgagk 140
                 q+e +++ ++ +lrililg+p+++ ++ l+++l+++  
  CDO70829.1 114 QEEILSKDVQVFLRILILGAPGYIGFESLKKYLQCQVS 151
                 **********************************9843 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 1.6e-27
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfse..qi 97 
                 P +l++ +e+  + i+ l +grlg+  lAa s+ +++ ++l ++++g+++a++t vg+ +Ga++  +ak+a + + +l++l++ i+++++l+  +   +
  CDO70829.1 226 PGILMVGTEWAAFEIVALAAGRLGPLPLAAQSVIMTTDQILNTIPFGIGVAASTKVGNLIGARSAIGAKRASHASALLSVLVGTIVMVALLATKDvnVF 324
                 56888999*********************************************************************************8888652268 PP

        MatE  98 lslftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llnipln 159
                  +l+++d+ev+ l+++ +++++ +++a++l   + g+lrg+g+++++++++li++ +l +p++
  CDO70829.1 325 GYLYSDDKEVVRLVSKVMPLVASFQIADGLAGSCGGVLRGQGRQHLGAFFNLIAYyVLALPMG 387
                 99*********************************************************9987 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.3e-06     0.039       6      77 ..     376     448 ..     370     453 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-06
     UPF0242   6 isiiflYllPll.llaiysiqllseqksWsllsiGlllaaaGsLlllllllkwekalkeklekskleekeakl 77 
                 ++++ +  lP+   la+ +  +l  q  W   +++l+++ + +  ++++ + w+ ++++++e ++ e+k ++l
  CDO70829.1 376 LIAYYVLALPMGiTLAFHPKIHLGLQGLWIGQVVALFIVGISEYAVVWVGTDWSWEVQKGIERNEAEAKRRQL 448
                 44444445555469*******************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3357.91
//
Query:       CDO70830.1  [L=392]
Description: hypothetical protein BN946_scf184801.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-81  272.8   0.1    4.5e-81  272.4   0.1    1.1  1  Arginase  Arginase family
  ------ inclusion threshold ------
      0.081   13.1   0.3       0.16   12.2   0.0    1.5  2  UPF0489   UPF0489 domain


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.4   0.1     5e-85   4.5e-81       2     277 ..      80     376 ..      79     378 .. 0.87

  Alignments for each domain:
  == domain 1  score: 272.4 bits;  conditional E-value: 5e-85
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBTHCHEETTTTE...SCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHTTCEE........... CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarleealeynlelgv...leelkivdlgdvavtpvdneevleqieeavaeilkagklp........... 86 
                 d+a++G+Pfd+++s+rpGarfGP+ ir++s+rl+ + +yn+ l v   l+ lkivd+gd++vtp+dn+ +++qiee  +e+l++ ++            
  CDO70830.1  80 DIAFIGAPFDTGTSYRPGARFGPAGIRAGSRRLTLYGGYNVPLAVnpfLSGLKIVDCGDIPVTPYDNNYAIKQIEEGHKELLQRTAFSplgndtstgkp 178
                 89********************************88889998888999************************************444445555555555 PP

                 ..............EEEESSGGGHHHHHHHHHHHHSTTEEEEEESSS----SSC......TTTBSSSTTSHHHHHHHHTSECGCEEEEEEE-STCSH.. CS
    Arginase  87 ..............ivlGGDHsialgilralaekygkplgvihfDAHaDlrtpe......tegsgnshGtpfrraaeegllkpkklvqiGirsvdne.. 163
                               ++lGGDH+i l+ilr+++ +yg+ ++vihfD+H+D+++p+      +e++ ++hGt  +           +l +  ir++ ++  
  CDO70830.1 179 lvpisadgkhhpriVTLGGDHTIVLPILRSIYSAYGA-ISVIHFDSHLDTWKPQvfggapSEQAAINHGTSYS-----------SLQHGAIRTTLSGpa 265
                 55555555555566*********************96.****************5555555555555555555...........555666666666666 PP

                 HHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSST CS
    Arginase 164 eyelakelgirvitmreidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldte 262
                 +y  ++ +g++ i++reid +g + ++++i+e vg  ++pvylS+DiD +Dpa+aP+tGtpe+gG+++rel++++r+l + l++v+aD+vEv+Pa+dt+
  CDO70830.1 266 DYTNDDASGFQRIEAREIDTIGTDGIIKKIRETVG--DKPVYLSIDIDSIDPAFAPATGTPETGGWSTRELRTIIRGLDG-LHIVSADIVEVAPAYDTN 361
                 66666779**************************8..67***************************************99.****************** PP

                 TTHHHHHHHHHHHHH CS
    Arginase 263 aeqtarlaarlvrel 277
                 ae t+++aa++++e+
  CDO70830.1 362 AELTTMAAADVLFEV 376
                 *************95 PP

>> UPF0489  UPF0489 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.4   1.3e+04      34      42 ..      24      32 ..      13      55 .. 0.71
   2 ?   12.2   0.0   1.7e-05      0.16      14      46 ..     205     239 ..     196     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.4
     UPF0489 34 aHpDllipk 42
                +H Dl +p 
  CDO70830.1 24 HHDDLQMPL 32
                788888886 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.7e-05
     UPF0489  14 iyraigskklpsdlslvHlDaHpDllipk....kmsa 46 
                 i r i s +    +s++H+D+H D+  p+    + s+
  CDO70830.1 205 ILRSIYSAY--GAISVIHFDSHLDTWKPQvfggAPSE 239
                 455555555..899***********999877763333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 2101.37
//
Query:       CDO70831.1  [L=289]
Description: hypothetical protein BN946_scf184801.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00068   19.0   0.8     0.0032   16.8   0.8    2.3  1  SKG6             Transmembrane alpha-helix domain
     0.0026   17.7   4.8     0.0051   16.8   4.8    1.5  1  Gly-zipper_Omp   Glycine zipper
     0.0032   17.3   5.5     0.0058   16.5   5.5    1.4  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.011   15.5   0.1      0.016   15.0   0.1    1.2  1  Yip1             Yip1 domain
      0.015   15.2   0.3      0.037   14.0   0.3    1.7  1  Gram_pos_anchor  LPXTG cell wall anchor motif
      0.021   14.6   5.3       0.04   13.7   5.3    1.4  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.14   12.0   0.0       0.26   11.1   0.0    1.4  1  Adeno_E3_CR2     Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   1.3e-06    0.0032       2      38 .]     204     240 ..     203     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
        SKG6   2 sdssnsntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 s+ss+s t aI+ +V+ +Va  +i+  +++++ rRR+
  CDO70831.1 204 SSSSSSHTGAIVGGVVGGVAGAAILATILFFLFRRRR 240
                 8999*****************8888888888888885 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   4.8     2e-06    0.0051      18      38 ..     207     227 ..     196     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
  Gly-zipper_Omp  18 ggrgtGaliGAavGaavGgli 38 
                     + + tGa++G++vG+++G++i
      CDO70831.1 207 SSSHTGAIVGGVVGGVAGAAI 227
                     2457***************98 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   5.5   2.3e-06    0.0058       2      17 ..     212     227 ..     197     230 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.3e-06
  Rick_17kDa_Anti   2 GaliGAaaGgvaGaai 17 
                      Ga++G+++GgvaGaai
       CDO70831.1 212 GAIVGGVVGGVAGAAI 227
                      5555555555555555 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   6.1e-06     0.016      42      89 ..     192     237 ..     146     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.1e-06
        Yip1  42 lnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliak 89 
                 ++ + t+++  +  + ++ss+ gai+gg++g+++g+++la +l+++ +
  CDO70831.1 192 SVSTPTIGA--SNRSSSSSSHTGAIVGGVVGGVAGAAILATILFFLFR 237
                 222333333..4778899*************************99665 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   1.4e-05     0.037      21      42 ..     221     242 ..     210     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
                      XXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  21 taaGllallggllLlvkrRKke 42 
                       +aG+++l++ l++l++rR+++
       CDO70831.1 221 GVAGAAILATILFFLFRRRRRD 242
                      689****************998 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.3   1.6e-05      0.04      25      43 ..     209     227 ..     198     229 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                      XXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG  25 ggkGAaiGAaaGalaGgai 43 
                        +GA++G+++G++aG+ai
       CDO70831.1 209 SHTGAIVGGVVGGVAGAAI 227
                      4569************998 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.26       4      33 ..     213     241 ..     211     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
  Adeno_E3_CR2   4 stiaIivaVvvGlaiIiicmlyYaCcYrkh 33 
                   ++++++v+ v+G ai++ ++l + +++r+ 
    CDO70831.1 213 AIVGGVVGGVAGAAILA-TILFFLFRRRRR 241
                   68999*******99987.889999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1281  (0.0714485); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                       168  (0.00937029); expected 17.9 (0.001)
Passed Fwd filter:                        70  (0.00390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.42u 0.42s 00:00:01.84 Elapsed: 00:00:00.65
# Mc/sec: 1347.87
//
Query:       CDO70832.1  [L=111]
Description: hypothetical protein BN946_scf184801.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 622.54
//
Query:       CDO70833.1  [L=465]
Description: hypothetical protein BN946_scf184801.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.5   0.2      0.005   16.7   0.2    2.0  1  Mid2       Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   2.8e-07     0.005       2      81 ..     224     299 ..     223     301 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.8e-07
        Mid2   2 ektitsiiegktiLsdlyttvtytptataessnkskssGLskknrniviGcvvGigvPlllvillllyifCikskrtdfi 81 
                 ++tits i    i  ++ t  t  pt  ++       + L++  r i+ G v G ++ +l+  +++l++   ++k+t f 
  CDO70833.1 224 QSTITSAIATTVIDGQTTTLFTTFPTTLSDG---GGATNLTSAKRGIIAGSVGGAALVMLI-AAVFLFYRRHQHKKTSFF 299
                 689***9976544444433344445444443...67889***********99888775555.566666677899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1304  (0.0727313); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                       174  (0.00970495); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.48u 0.40s 00:00:01.88 Elapsed: 00:00:00.58
# Mc/sec: 2424.73
//
Query:       CDO70834.1  [L=143]
Description: hypothetical protein BN946_scf184801.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1012.87
//
Query:       CDO70835.1  [L=140]
Description: hypothetical protein BN946_scf184801.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1061.25
//
Query:       CDO70836.1  [L=205]
Description: hypothetical protein BN946_scf184801.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  155.8   0.0    2.6e-44  151.7   0.0    1.9  1  MMS1_N         Mono-functional DNA-alkylating methyl methanes
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.23   11.4   0.0    1.4  1  Ribosomal_S4e  Ribosomal family S4e
       0.15   11.2   0.0       0.21   10.7   0.0    1.1  1  DUF5031        Domain of unknown function (DUF5031)


Domain annotation for each model (and alignments):
>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   4.4e-48   2.6e-44      57     274 ..       1     205 []       1     205 [] 0.84

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 4.4e-48
      MMS1_N  57 avsayekvflvyslkkkeilnr..ealll.ssplearksegvilsmvFldpgykeednpiialleqdrrg.............kteltlyewdlglnlv 139
                 +++a+ek + vy      ilnr  +a+l  ssplea+k++ +il++v+ld+g+ +  np++a+le+d ++             ++ lt+ e+dl+ln+v
  CDO70836.1   1 MIAAMEKAKVVY------ILNRdaAAKLKiSSPLEAHKANAIILHVVGLDVGF-D--NPTFAALEVDYTEsdqdaageafsnaQKMLTYHELDLSLNHV 90 
                 89**********......999998555556***********************.5..9*******5555555567779999999*************** PP

      MMS1_N 140 rkisktsepkknldsganlLiplpkpggvlVcgetiitykdildqed.irkkswarPrrekatnfv..aweklds.fffllatedGdLylleiekdeds 234
                 ++  k+sep    d++an+L ++p+ g     + ++  y+        +     +  r +     +   ++k+++ fffl+++e+GdLy+++ie++e+ 
  CDO70836.1  91 VR--KWSEP---TDPRANMLLQIPR-GQ----AASSDRYDGP----SgVL----DSERGRII---TaaLMHKMKGaFFFLVQSEEGDLYKVTIEHEEQ- 167
                 **..*****...9************.32....2334444444....3122....33333322...23379***********************99655. PP

      MMS1_N 235 gkvvtsislkyfdtvsvasalvilksgfLfvasefGdgql 274
                   +v+++++kyfdtv+vas+l+ilksgfLfva++fG+++l
  CDO70836.1 168 --EVKALKIKYFDTVPVASSLCILKSGFLFVAADFGNHHL 205
                 ..6***********************************86 PP

>> Ribosomal_S4e  Ribosomal family S4e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.23       3      41 ..     145     183 ..     143     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                    EEEEEEE-TTSSEEEEEE-TTCCCEEEEEECEEEEECCC CS
  Ribosomal_S4e   3 enyrllydtkgrfalhkItseeakyKLcKikkkttvkkg 41 
                      + l+  ++g +  + I+ ee+++K +Kik   tv+ +
     CDO70836.1 145 AFFFLVQSEEGDLYKVTIEHEEQEVKALKIKYFDTVPVA 183
                    5689999************************99998855 PP

>> DUF5031  Domain of unknown function (DUF5031)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.5e-05      0.21     250     310 ..     106     186 ..      99     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.5e-05
     DUF5031 250 leipngqkviepltnvpldvadklagGat......klkGtcllpk...............eeevrvvlkfsyyDttPlcnnl 310
                 l+ip gq     + + p  v+d+  g  +      k+kG +++                 e+ev++ lk++y+Dt P++  l
  CDO70836.1 106 LQIPRGQAASSDRYDGPSGVLDSERGRIItaalmhKMKGAFFFLVqseegdlykvtieheEQEVKA-LKIKYFDTVPVASSL 186
                 5677777777777788888887765544455568899**999877799**********99999997.9*********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1367.67
//
Query:       CDO70837.1  [L=531]
Description: hypothetical protein BN946_scf184801.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-08   32.7   0.0    1.3e-07   31.9   0.0    1.4  1  C2        C2 domain
  ------ inclusion threshold ------
       0.06   12.9  14.3       0.13   11.9  14.3    1.5  1  SR-25     Nuclear RNA-splicing-associated protein
      0.093   13.1   1.1       0.17   12.2   1.1    1.4  1  DUF778    Protein of unknown function (DUF778)


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.1e-11   1.3e-07       3      93 ..      15     120 ..      13     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2.1e-11
                 EEEEEEEEESSSSSST.TSSCEEEEEEEE..............ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEE CS
          C2   3 levtvieAknLpnkdk.kgssdpyvkvsl..............dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkvei 86 
                  e+  ++Akn+p  d    ssdpy+ v+l               ++  ++T + +++l+P++n +  ++  + +  +L +++fd+d  ++dd +Gk+ i
  CDO70837.1  15 CEIVFHSAKNVPLSDLnDLSSDPYIAVTLtpslsgasgpksdtPQTISFRTPTARRTLHPTFNARWIVSGIPASGFVLVLHLFDEDPGNHDDKLGKAVI 113
                 578899********996667********************998889999***9**********9999976666**************99999******* PP

                 EGHHHHT CS
          C2  87 plstlls 93 
                 ++ + ++
  CDO70837.1 114 RFPDPKR 120
                 9877444 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  14.3   2.1e-05      0.13      43     124 ..     437     517 ..     424     530 .. 0.40

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
       SR-25  43 sasekeeerskekkkkkrrrssssssssssssssssssssssssdd.rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaea 124
                 +  +++  r  +++k   r+ s ss ssssss ssss+   ++ ++ r++ + ++++  +++ k        ++ake+++ ++
  CDO70837.1 437 QEVKMR-ARGGKNAKAVVRQASVSSLSSSSSSASSSSAEERQAAEGtREEAEAERHRLAEQQGKE-ALDEDGQRAKENEDDDK 517
                 222222.3333333443343344444444444444444444444442555555555544444443.33333333333222222 PP

>> DUF778  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.1   2.9e-05      0.17      26     154 ..     333     530 ..     328     531 .] 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
      DUF778  26 Fagsyyvavekl...................................................................afGaparywqlkpllmesra 57 
                 F+g ++v+  +                                                                      Ga  r+  ++    + + 
  CDO70837.1 333 FSGEFFVRRVRKpatangnsrhtsneppkdeddashsdhpdpsslppseyelvidndsgtyrprkellptleaflarpsNLGALGRIRAMDGFDERLKR 431
                 777888877755556666666677777777777777777777777777777777777777777777777777777777777888888888885555555 PP

      DUF778  58 rrtrrePfklltqggkqailvlwerllallqPd..evstcsaqtalsakaerekaesstkr..teevknsyddadgirsaPdlsssseefqgeeynLlt 152
                  ++ r+ +k+ ++ggk+a +v  +   + l+ +   +s++sa++++ a+ +re+ae + +r  +++ k+++d+  g r   + ++  +  q ee+nL +
  CDO70837.1 432 WKKERQEVKMRARGGKNAKAVVRQASVSSLSSSssSASSSSAEERQAAEGTREEAEAERHRlaEQQGKEALDED-GQRA-KENEDDDKAAQDEEHNLTA 528
                 56778889999999999877776666666555401445555555555666666555544441145556667665.5554.4555666666999999987 PP

      DUF778 153 an 154
                 + 
  CDO70837.1 529 NK 530
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1534  (0.0855597); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 3735.79
//
Query:       CDO70838.1  [L=152]
Description: hypothetical protein BN946_scf184801.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.0   0.0       0.03   14.2   0.0    1.4  1  CBM32     Carbohydrate binding module family 32


Domain annotation for each model (and alignments):
>> CBM32  Carbohydrate binding module family 32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.6e-06      0.03      19      60 ..      10      51 ..       9      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-06
                CTTS-EEEETTEEEEE--SS-EEE-SS-EEEEEEEEEEEEEE CS
       CBM32 19 LknlPlqlkgkevsvSpsnEVikwqaggsltieldkvvtlks 60
                +++l++ + g+++ +    E  ++q+g+ +t+e+d+++tl+s
  CDO70838.1 10 FAYLAVAALGQRIAIGAPVEWSTVQPGQNITVEVDRPMTLSS 51
                678999*********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1171.69
//
Query:       CDO70839.1  [L=326]
Description: hypothetical protein BN946_scf184801.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-24   85.7  16.3    5.8e-23   81.6  16.3    2.5  1  Zip        ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6  16.3   3.3e-27   5.8e-23       7     307 ..       6     289 ..       2     321 .. 0.72

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 3.3e-27
         Zip   7 aiiaililsllgllgpllvpkiskl.lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllveklltmivekks 104
                 +++++ +l  +g +g  ++p+   +  s++ ls l+af+ G llg a+  ++Pe++e l +s   e ++     l ++ Gf ++l+ve++++       
  CDO70839.1   6 SVFIMAVLLGAGSFGTGMLPLS--VaFSRSSLSALSAFGTGLLLGAALGVVIPEGIETLASSARTEVFPTSTIALSLITGFTFMLIVEQTVSD------ 96 
                 4455555555555555555522..23899*********************************98887888999999***************95...... PP

         Zip 105 shkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllglilHsfidGLA 203
                  h e+ p +as++ ++s+ +++v+ d   ++         ++ +  s++  ++ + +++e              + + ++ra+ l+lgl++H + dGLA
  CDO70839.1  97 -HPEPYPIEASQPPKPSEEESTVEFDVELGE--------LERAEGISPAGPSRPHPPPHE--------------VVETRARALPLTLGLVVHALADGLA 172
                 .445566666666555555555543322222........222344444444444444444..............4556678****************** PP

         Zip 204 lG.......vssssstg........islfiAvllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrsisessgaeivsgillalsa 287
                 lG       +s+ s++g        +++f+A+++H++p +l+l++ Ll++ ls  +   +  +f++++plG+l+  ++ s  ++  +    g+ l +s+
  CDO70839.1 173 LGsaslsdgASEPSTSGsvhptglsVVVFLALVVHKAPTALALTTSLLSTSLSPAQCKKHLAIFSAATPLGTLVSYWLLSFFGADSHGRWPGVALLFSG 271
                 **99966663333333322222222579*************************************************99966778888899******** PP

         Zip 288 GtflYvalvellphEllnek 307
                 G flYva+v l p  l +++
  CDO70839.1 272 GSFLYVATV-LQP-SLTHSH 289
                 *******98.334.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2415.80
//
Query:       CDO70840.1  [L=645]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.6e-202  671.2   5.2   9.4e-202  670.9   5.2    1.0  1  SKN1      Beta-glucan synthesis-associated protein (SKN1)


Domain annotation for each model (and alignments):
>> SKN1  Beta-glucan synthesis-associated protein (SKN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  670.9   5.2  5.2e-206  9.4e-202       5     501 .]     131     645 .]     127     645 .] 0.96

  Alignments for each domain:
  == domain 1  score: 670.9 bits;  conditional E-value: 5.2e-206
        SKN1   5 seekekDDylhnpdpeakadkkkkvkdlklldkrgllnvlgllllvlgllllfivlPvltylgkkekestkseaaeiltkaqvpllsairtslidpdtP 103
                 +++ + DD lhnpdp ++   +   ++++ +++rg+lnv +l+++v ++++lf+++P++ ++ +   +++  +   i+ + qvp+l++   s+idp t 
  CDO70840.1 131 TKDPDLDDALHNPDPVRD---AALDRRCTPFSTRGWLNVSALVIIVGSIIVLFAGYPIIDHYVHLPPKTAGFNLGGINGSGQVPKLANFP-SVIDPATD 225
                 567789*********444...4445689999*******************************9999999888*****************9.9******* PP

        SKN1 104 esaltrkskdgkklkLvfsDefnkegrtfydGdDqfwtavdlhYaatkdlewYdpdavttadGtLelrldafknhdLnyrsGmlqsWnklCftggalev 202
                 +sa+trk++dgk+++LvfsDef+++grtfy+GdD+fw+avdlhY++t dlewYdp a+tt++G+L +++++++nhdLn+rsGm+ sWnklCft g++ev
  CDO70840.1 226 RSAYTRKGTDGKTYNLVFSDEFETDGRTFYPGDDPFWEAVDLHYWPTGDLEWYDPIAITTENGKLVITMEEVRNHDLNFRSGMIASWNKLCFTTGYIEV 324
                 *************************************************************************************************** PP

        SKN1 203 svsLpgkgevsGlWPglWtmGnLgRpGylasteGvWPYsYdsCDvGitpnqssadG..............lsylpGqrlsaCtCkgedhpsp..gvgRg 285
                  vs+pg++++ GlWP+ WtmGnLgR Gy a+teG+WPYsYdsCD+G+ pnq++ad               ls+lpGqrlsaCtC ++dhp+p   vgRg
  CDO70840.1 325 KVSMPGSPQAPGLWPAAWTMGNLGRQGYGATTEGMWPYSYDSCDLGTFPNQTTADHqpavaatggtngepLSFLPGQRLSACTCPNSDHPGPstDVGRG 423
                 *******************************************************************************************96559*** PP

        SKN1 286 aPeiDileaevetekevgvasqslqvaPfdiwylpdy..dfveiydksvtalnsyaGgpfqqalsglttlnkewyeeegkkfqkygleyk..pnddekg 380
                  PeiDi+e+++++++ ++++sqs+q+aP++++y + +  d + iyd+s+t++nsy+G +fqqa+s++t +n+ +y  +++ +++yg+e+   p+++++g
  CDO70840.1 424 VPEIDIFETQIDVSRFQAQVSQSFQTAPYNYQYEFVNtsDVTPIYDDSITKFNSYKGAQFQQAISAVTDINNANY--NDQGYATYGFEWWsdPDHRDDG 520
                 ********************************98876668999********************************..6677********878999**** PP

        SKN1 381 yitWfvgdektwtlkakalgpng..nigqRliseepmsiilnlgisnnfaaidwkelefpatlriDyvRlyqeedees..vgCDPedyptadYiekhke 475
                 yitWf + +++w+++a+++gp++  +i+qRl++eepm+i++nlg+s  f++ d+k+l+fp++++iDyvR+yq+ed+++  ++CDP+ +ptadYi++h +
  CDO70840.1 521 YITWFADGKPSWKMTAATIGPDSitQISQRLVPEEPMYIVMNLGMSPGFQKQDFKHLTFPVKMYIDYVRVYQREDAVDeaLSCDPSHHPTADYINRHLN 619
                 **********************999**************************************************97777******************* PP

        SKN1 476 aYenanltsweeagyefpknklldec 501
                 aY+n+nlt+w++agy+fp+n+ +d+c
  CDO70840.1 620 AYTNPNLTTWDQAGYTFPRNSQYDGC 645
                 *********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4369.29
//
Query:       CDO70841.1  [L=1062]
Description: hypothetical protein BN946_scf184801.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-35  120.6   0.1    7.4e-23   81.5   0.0    2.3  2  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   4.1e-27   7.4e-23       1     118 [.     631     781 ..     631     800 .. 0.79
   2 !   36.7   0.0   2.1e-13   3.8e-09     128     187 ..     907     966 ..     896     976 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 4.1e-27
                    ---BHHHHHHHHHHHHHHHHH.CCCTCCCEEE--THHHHHHC..........SS.......T.CHCHHHCTTCCCCCS..-GGG-SEEEEEEEC.T CS
  Peptidase_C48   1 ewlndtvidfylkllaerles.seskaervhflntffvskLtkavkdfkknkskkkfkeskk.kdlyngvrrwtrkvnkedlfdkdiiyiPinedg 94 
                    ++lndt i+f lkl+ + l+s +++ ae+vh++n+ff++kL+          sk      k+ +d y  vr+wt kv   d+f+k++i++Pine +
     CDO70841.1 631 QYLNDTLIEFGLKLWLDNLRSeQPELAEQVHVFNSFFYKKLN----------SK------KEiQDSYPSVRKWTSKV---DIFKKKYIIVPINE-N 706
                    68****************************************..........22......2348999**********...**************.* PP

                    TEEEEEEEETCCC...................................................EEEEE-TTS-S CS
  Peptidase_C48  95 kHWvlliinlpdk...................................................tililDSlisl 118
                    +HW+l+ii +p +                                                    + i D  + +
     CDO70841.1 707 FHWYLAIIINPAGmlhppplaaraapqtrkrkheeeqsapatdafadkrssasrsdtapsesspDVMIVDAVSEG 781
                    ***********9877777776666666666666666666666666666666666666666666655555555555 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 2.1e-13
                    HHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHHCH CS
  Peptidase_C48 128 innlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaegapqe 187
                    i +l +yL +eal+kk + +++t+     + k p q+n++DCG++vl f+e +++++  +
     CDO70841.1 907 IPKLGKYLQQEALDKKGYPIEKTRLTGSKAVKGPMQQNFCDCGLFVLAFVEAFMKDPLKS 966
                    66789**************************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 6867.22
//
Query:       CDO70842.1  [L=1147]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-11   44.5  16.2    2.5e-10   40.6  12.7    3.3  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    5.9e-11   42.7   0.5    1.6e-08   34.7   0.5    2.3  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.2e-07   29.9   0.0    1.2e-06   27.5   0.0    2.0  1  Chitin_synth_2   Chitin synthase
    0.00021   20.8   0.6      0.036   13.5   0.1    2.3  2  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.078   12.8   0.0        3.5    7.4   0.0    2.4  2  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.041   1.5e+02      54      83 ..     224     254 ..     208     270 .. 0.78
   2 !   40.6  12.7   7.1e-14   2.5e-10       2     191 ..     705     915 ..     704    1030 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.041
  Glyco_trans_2_3  54 edhgkdilvrealgrvvpsv.Gsgaflrrsa 83 
                       +h++  + r +++ ++p++ G+ga+  ++ 
       CDO70842.1 224 SRHISKLFLRRYFHVPAPFThGHGAVAAADS 254
                      3788999***********999***9977665 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 7.1e-14
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.spevaivqgpvlvmnvanwleelaalf..faedhgkdilvrealgrvvpsvGsgaflrrsalqevg.... 88 
                      +l  D+Dt+l+p     + a+l  + ++a v+g+v v+++ +++ +++al   f  + + d + ++ +g+v  +   +a+ r+s l +++    
       CDO70842.1 705 VLTTDSDTRLDPSAASHLMAMLFsDENIAGVTGNVDVDRRETIIPNVYALGnwF--SSNVDSPCQSFFGSVSRLSSPMAVYRVSDLMDIVspwi 796
                      7889****************888469***********************98655..456777888889999999999*******9999889988 PP

  Glyco_trans_2_3  89 ..gwdgdessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc....eleklil...............lvrllgylgs 161
                        +  g+e +++ED++++  l+++G+++ + +e++ ++  p+++  +++Q +Rw +      +     l               ++++l y++ 
       CDO70842.1 797 mqTHFGKEATTGEDMNLASQLLSRGLKTAHTHEAMAYTDAPNNYVRWIKQQTRWSRAMyreaL-----LstprlnnynpwlaveATKQLYYPAV 885
                      884445699*************************9**********************755541.....13333344444445566666667777 PP

  Glyco_trans_2_3 162 llwsalplhlallllfsllalalvllllll 191
                      l++s l l+++ +++ +l+++++++ +++l
       CDO70842.1 886 LIASVLYLLYTPAHWENLVIWITTIGAAIL 915
                      777777666666666667766666644433 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0036        13       2      84 ..     540     621 ..     539     638 .. 0.80
   2 !   34.7   0.5   4.5e-12   1.6e-08      75     229 ..     684     852 ..     673     853 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0036
  Glyco_tranf_2_3   2 rdlavlVptfneedvlge.vlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealr 84 
                        +++ V+ ++e+ +l e +lesl aq+yp  ++v+v d+++ +  ++  ++  a+p ++  +v+ +  l++  ++++++eal+
       CDO70842.1 540 E-CSITVVGYRENGRLWEdCLESLKAQQYPVKHIVSVIDGNEPADMAMSFAFGNAFPENDSLIVHFPVLLSV-LYVQKYKEALH 621
                      5.89999999999976555*******************9999888877668899999777666777765564.77777777765 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 4.5e-12
  Glyco_tranf_2_3  75 ksralnealravk.....sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaar..ralg.vlt 159
                      k++a++ a+  ++      d vl  D+Dt+++P +   l + +  +++++ v+++v +++r+t ++ ++a  ++ ++ ++        +g v  
       CDO70842.1 684 KRHAMFTAFLVATyalgtKDAVLTTDSDTRLDPSAASHLMAMLfSDENIAGVTGNVDVDRRETIIPNVYA--LGNWFSSNVDSPcqSFFGsVSR 775
                      55666666665554555599***************777777776999***********************..5589996654443244454899 PP

  Glyco_tranf_2_3 160 lnGsgslirrevlkele.......gldplflltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvy 229
                      l+  + ++r + l ++         +++   +++D  l+  l ++g +ta   +a  ++  p +  + ikq +Rw++
       CDO70842.1 776 LSSPMAVYRVSDLMDIVspwimqtHFGKEATTGEDMNLASQLLSRGLKTAHTHEAMAYTDAPNNYVRWIKQQTRWSR 852
                      99********************54455577888******************************************97 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.3e-10   1.2e-06     203     370 ..     703     850 ..     685     859 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.3e-10
  Chitin_synth_2 203 eivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgadgkwv 297
                     ++vl+ d+dt++ p ++++l+a+l +d++i g+ G+  ++  +e+ +  +     + s +     +s fGsv+ l   +++yr+    +      
      CDO70842.1 703 DAVLTTDSDTRLDPSAASHLMAMLFSDENIAGVTGNVDVDR-RETIIPNVYALGNWFSSNVDSPCQSFFGSVSRLSSPMAVYRVSDLMD------ 790
                     789***********************************985.678888899999999999999********************976554...... PP

  Chitin_synth_2 298 PilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrw 370
                       +vsp i++++  ++            Ged  l++ ll      kt +  +a++ t aP+++   + q+ rw
      CDO70842.1 791 --IVSPWIMQTHFGKEA---------TTGEDMNLASQLLSR--GLKTAHTHEAMAYTDAPNNYVRWIKQQTRW 850
                     ..344444433333332.........236666666655543..345555666666666666666666666666 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0035        12      26      73 ..     697     745 ..     684     791 .. 0.83
   2 !   13.5   0.1     1e-05     0.036     127     173 .]     808     852 ..     797     852 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0035
  Glyco_transf_21  26 leaakydllvisDsdvrvkpdyLeellaa.ledpkvglVtslpvgsdak 73 
                      ++   +d +++ Dsd+r++p +  +l+a+ ++d++++ Vt+ + + +++
       CDO70842.1 697 YALGTKDAVLTTDSDTRLDPSAASHLMAMlFSDENIAGVTGNVDVDRRE 745
                      55567899***************99998725779999999866555555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1e-05
  Glyco_transf_21 127 AeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWar 173
                       eD+ l+ +l ++Glk+++ ++++a t++p+ +++r + ++q+rW+r
       CDO70842.1 808 GEDMNLASQLLSRGLKTAHTHEAMAYTDAPN-NYVR-WIKQQTRWSR 852
                      69***************************95.7777.9*******97 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00096       3.5       1      44 [.     542     583 ..     542     594 .. 0.82
   2 ?    2.8   0.0     0.026        92      79     122 ..     701     745 ..     661     791 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00096
                      EEEEEESS-.TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHH CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaqdpypdfeiivvDDgStDetve 44 
                      s+ ++ y e   + + +lesl+aq  yp ++i+ v Dg   e ++
       CDO70842.1 542 SITVVGYREnGRLWEDCLESLKAQ-QYPVKHIVSVIDGN--EPAD 583
                      5667778888888999********.************98..5444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.026
                      -SSEEEEEESSEEE-TTHHHHHHH.HHHH.TTCEEEEEEEEEECC CS
  Glycos_transf_2  79 tgdyilflDaDdepdpdwleklve.alekdgadvvlgqrprifge 122
                      t d +l+ D+D+  dp   + l++  + +++ ++v g++++ + e
       CDO70842.1 701 TKDAVLTTDSDTRLDPSAASHLMAmLFSDENIAGVTGNVDVDRRE 745
                      4459*************6666665155555666666666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 7054.70
//
Query:       CDO70843.1  [L=664]
Description: hypothetical protein BN946_scf184801.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-08   33.0   0.3    8.9e-08   31.8   0.3    1.6  1  F-box       F-box domain
    0.00021   21.1   0.3    0.00053   19.8   0.3    1.6  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.3     1e-11   8.9e-08       1      42 [.       1      42 [.       1      47 [. 0.92

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1e-11
                -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH CS
       F-box  1 ftlsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrl 42
                ++l++L++e+l hIL++L+  dl  +rrV   +++li s  +
  CDO70843.1  1 MSLLQLSPELLVHILSYLDYQDLHVCRRVNSAMNRLIQSSIF 42
                789*********************************998766 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   5.9e-08   0.00053       6      37 ..       8      39 ..       4      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.9e-08
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrvald 37
                +E+L++I+syL+ +dL  +++V +  +r++++
  CDO70843.1  8 PELLVHILSYLDYQDLHVCRRVNSAMNRLIQS 39
                7**************************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 4358.74
//
Query:       CDO70844.1  [L=522]
Description: hypothetical protein BN946_scf184801.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-44  152.4   1.5    1.8e-37  129.4   0.0    2.0  2  FAD_binding_2  FAD binding domain
    4.9e-07   29.5   0.0    1.2e-05   24.9   0.1    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
    7.2e-05   22.2   0.1      0.059   12.6   0.1    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0007   18.8   3.1    0.00096   18.3   0.3    2.4  3  GIDA           Glucose inhibited division protein A
     0.0025   17.4   3.4     0.0025   17.4   3.4    2.3  2  DAO            FAD dependent oxidoreductase
     0.0038   17.4   0.8      0.015   15.5   0.4    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0074   15.0   0.0       0.25   10.0   0.0    2.3  2  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
       0.19   10.9   0.0          1    8.6   0.0    2.0  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   2.8e-08   6.3e-05       1      33 [.      14      47 ..      14      66 .. 0.92
   2 !  129.4   0.0     8e-41   1.8e-37      63     414 ..      94     499 ..      80     501 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.8e-08
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeqe 33
                   D iV+GsG AG +AAl+a++aG  +v++v+k ++
     CDO70844.1 14 DCIVVGSGHAGSCAALSARDAGCnRVLIVDKCPP 47
                   89****************************9876 PP

  == domain 2  score: 129.4 bits;  conditional E-value: 8e-41
                    HHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHHHHT.T----BCCTSSB-EEE-..TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT CS
  FAD_binding_2  63 elhrtdtlkaldeladqplveafveaapeavdeLeel.gvpfsrtedgpvdvrel..Gglsatartlhdaadarretlvtghallarlvesarkag 155
                    ++  +d +  + +++d+ +v+a+v+ +++av++L++   vpf+    +  +++ l  G +  +   + ++ d        g++l+a+  +++++ag
     CDO70844.1  94 DDFTRDIMRLGNGRSDPGVVKAVVDGSRDAVQWLADRvKVPFTL---SFNRQAYLvdGRHVFWGGLVLSVED-------GGKGLIAAHRAALEAAG 179
                    667789999999999**********************9888888...5444444423666666333343444.......799**********999* PP

                    EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG.............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-E CS
  FAD_binding_2 156 vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr..allkell.gaaaeaettnapavtGdglalalragaalnddrmeev 248
                    v+ +++t+a+eL+v+++ v+G  v+  ++g+  r+ra  v+la+gGf++  +l  ++l +    a++ + p +tGdglala r ga+l++   +++
     CDO70844.1 180 VETWFNTAATELLVNGDVVVGLLVN--REGSPLRLRAPSVILACGGFEAskDLRGKYLgQDWERAKVRGTPYNTGDGLALAKRIGARLTG---DFA 270
                    *************************..**********************9955555541567788899999****************998...9** PP

                    EEEEEEET....TTTB..B--THHHHTT...-EEE-TTSSBTH.........GGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT........... CS
  FAD_binding_2 249 qfhPtslvpirdgsgi..LitealrgeG...gilvdkdGrrFm.........nelasrdvvsrailekeiaeggseanvyldash........... 319
                      h t+++  +++ ++   ++ ++ + G   g++++ +G rF+              +  ++rail     ++ +    + + ++           
     CDO70844.1 271 GCHSTCWDANAPSDRGdrALSNQFTKSGyplGLMLNVRGARFVdegedfrnyT----YAKFGRAIL-----GQPG-GVAFQVWDSalvgwlrkeey 356
                    *******988888888885569999999***************7766654330....444444444.....3333.23344444455666666677 PP

                    .........................SSHHHHHHHSHHHHHHHHHCCT......S-TTTS.....................EEE........EEEEE CS
  FAD_binding_2 320 ........................gldaegleatleaineeaangldkdfgrgidpadr.....................pip.gpfyavkvvpaq 369
                                              d+e++++t+e++n++++ +  ++ ++  dpa +                     pi   pf avkv+ + 
     CDO70844.1 357 addvvekiwadsvaglaeklgekgLEDKEAFVRTVERYNKATRAFRAEHPEKRWDPAVKdglstqcstvklelpksnwalPIEkPPFLAVKVTCGI 452
                    77777777777777777777777577899****************99777777777777999999999999988888777332669********** PP

                    EEES-EEEBETTSBE..STTEEESSBTEEE-STCEESSSSTTS--TT CS
  FAD_binding_2 370 hytmgGvetdengrv..ldadgqpipGLYAaGevaaggvhganrlgG 414
                     +t+gG+++d+++     +++g+pi GL++ Ge  +g + g +++g+
     CDO70844.1 453 TFTFGGLAIDPDSAGviAEKTGEPIRGLFCTGELVGGLFYGNYPGGS 499
                    ***********9987689**************************997 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   5.3e-09   1.2e-05       1      73 [.      14      91 ..      14     136 .. 0.69
   2 ?    2.1   0.0     0.043        96      95     140 ..     173     218 ..     165     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5.3e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGa.kvlLve..ergvlGGl..ltsglvatdignkaee..qvvtgiareflerlrqrgga 73
                  D +VvG+g aG +AA++A  aG  +vl+v+  + +++GG+  +t+g+  t+ g   ++   +v+ +  e+ ++++  +++
    CDO70844.1 14 DCIVVGSGHAGSCAALSARDAGCnRVLIVDkcPPEWVGGNgyFTAGAHRTVHGGL-QDllPIVRNVSPEMAQNIDL-DAY 91
                  89********************7589999955567***98446888888888855.33477888888888877744.344 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.043
  FAD_oxidored  95 emlaeagvtvllntrlvevekegkriesvtveskeg.rktirAkvfi 140
                   + l+ agv+ ++nt ++e  ++g+ + ++ v ++eg   ++rA+ +i
    CDO70844.1 173 AALEAAGVETWFNTAATELLVNGDVVVGLLV-NREGsPLRLRAPSVI 218
                   567899****************989*****9.667559****99988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   2.6e-05     0.059       2      31 ..      14      42 ..      13      90 .. 0.83
   2 !    7.2   0.0    0.0011       2.5     183     249 ..     165     236 ..     154     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvel 31
                 d++v+G+G+AG  aal ++ ag++ +l+  
   CDO70844.1 14 DCIVVGSGHAGSCAALSARDAGCNRVLI-V 42
                 899*****************98876666.2 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE..EEETTSCE..EEESEEEE-S.-EEES-HHCSHCCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..xxxxxxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngekle..vvledgee..idadlvvvav.Gvrpstelleeklg 249
                  k l aa ++ale+ Gve+ ++t ++e+  ng+ +   +v+ +g+   + a  v++a  G+++s++l+++ lg
   CDO70844.1 165 KGLIAAHRAALEAAGVETWFNTAATELLVNGDVVVglLVNREGSPlrLRAPSVILACgGFEASKDLRGKYLG 236
                  667788899***********************4445666666665779999999998789999999865555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   4.3e-07   0.00096       1      30 [.      14      43 ..      14      60 .. 0.92
   2 ?   -2.5   0.4      0.88     2e+03     372     390 ..     161     179 ..     160     181 .. 0.86
   3 ?   -0.6   0.0      0.24   5.3e+02     117     157 ..     187     230 ..     182     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.3e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLith 30
                d+iV+G GhAG+ AAl a  +G++ +Li+ 
  CDO70844.1 14 DCIVVGSGHAGSCAALSARDAGCNRVLIVD 43
                79**********************999965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHHHHHHHCT CS
        GIDA 372 EaaaqGllAGinaarkakg 390
                 E  ++Gl+A++ aa++a+g
  CDO70844.1 161 EDGGKGLIAAHRAALEAAG 179
                 78899*********99987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.24
                 -EEEEEECTTEEEE.EEETTS-..EEEECEEEE--TT-BT-EEE CS
        GIDA 117 eveeliveekkvkg.vvtedge..tikakavviatGtflkgkih 157
                  ++el+v+ + v g +v ++g+   ++a +v++a G f ++k  
  CDO70844.1 187 AATELLVNGDVVVGlLVNREGSplRLRAPSVILACGGFEASKDL 230
                 66788888888888445555552256677********9988765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.4   1.1e-06    0.0025       1     203 [.      14     224 ..      14     247 .. 0.63
   2 ?   -2.9   0.5       1.8     4e+03     314     347 ..     478     509 ..     458     511 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTS.SGGGSSEEEEESSS....STHHSTH............HHHHHHHHHHHHH.HHHHHHHSST CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiags.gaSgrnsgllhsgl....rylpeas............elarlslealeel.releeelgid 78 
                 d +++G+G +G+++A+ +  +g   V++++k   + + g  g  ++  h  +     +                 +  +l +++ + + r++ +  g  
  CDO70844.1  14 DCIVVGSGHAGSCAALSARDAGcnrVLIVDKC-PPEWvGGNGYFTAGAHRTVhgglQD----LlpivrnvspemaQNIDLDAYTTDDFtRDIMRL-G-- 104
                 789***************767899********.7776666665554444444222222....133334555555455577777765555777765.5.. PP

                 TSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEE.EEHHHHHHHSTTSTTTS.EEEE.ETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEE CS
         DAO  79 idyrrtGllslaadeeelealdkllallleagldael.ldaeevrelepalpgll.galf.ypdtgqvdpakltaalaraaealGveilegtevtglee 174
                  +   +G++    d  +++a+ ++la++    ++  l ++++ +  ++   +++  g+l+ + ++g      l+aa ++a+ea+Gve  ++t +t+l  
  CDO70844.1 105 NGRSDPGVVKAVVDG-SRDAV-QWLADR--VKVPFTLsFNRQ-AYLVDG--RHVFwGGLVlSVEDGG---KGLIAAHRAALEAAGVETWFNTAATELLV 193
                 577888888887554.47777.777764..334443224443.333332..2233255442333232...46777777778***************866 PP

                 EETCEEEEE.EECT.EEE.EEEEE..EEE--GGG CS
         DAO 175 edgkvwgve.rttp.gen.daada..vVnaaGaw 203
                 +++ v+g+  +  + g+  +  +a  v++a+G +
  CDO70844.1 194 NGDVVVGLLvN--ReGSPlR-LRApsVILACGGF 224
                 66778888542..3365533.44456*****977 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                 TSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHH CS
         DAO 314 dglpligetpgvkglylatGhsghGltlapatGk 347
                  gl+  ge   v gl++    +g+Glt +++ G+
  CDO70844.1 478 RGLFCTGEL--VGGLFYGNYPGGSGLTGGAVFGR 509
                 456666663..78999999999****99999998 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   6.6e-06     0.015       1      34 [.      17      53 ..      17      71 .. 0.85
   2 ?   -2.4   0.0       2.6   5.7e+03       8      28 ..     254     280 ..     254     304 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.6e-06
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSSS..SSGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrdr..lGGr 34
                   +vG+G +G++aA  +++ag+ +vl+++k +   +GG+
     CDO70844.1 17 VVGSGHAGSCAALSARDAGCnRVLIVDKCPPewVGGN 53
                   8******************988*****9653346665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                    HHHHHHHHHCC......TEEEEEE-SS CS
  NAD_binding_8   8 GlvaAylLaka......gfdvlllekr 28 
                    Gl++A ++  +      g++ ++++++
     CDO70844.1 254 GLALAKRIGARltgdfaGCHSTCWDAN 280
                    666676665433333558888888875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00011      0.25       2      31 ..      14      44 ..      13      47 .. 0.87
   2 ?    2.4   0.0     0.022        49     104     165 ..     160     224 ..     152     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
                 SEEEE--SHHHHHHHHHHHHTT-.-EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgk.rVlllek 31
                 d iv+G G AG  aA+sa+++g+ rVl+++k
   CDO70844.1 14 DCIVVGSGHAGSCAALSARDAGCnRVLIVDK 44
                 89****************9998637999998 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.022
                  TT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTE...EEEESEEEE----S CS
  HI0933_like 104 vsdkaedivdallkelkeagvklrletevksvekeedgkfrvktksee...eleadklvlAtGGl 165
                  v+d  + ++ a  ++l++agv+   +t+ +++  + d ++ + ++ e+   +l+a +++lA+GG 
   CDO70844.1 160 VEDGGKGLIAAHRAALEAAGVETWFNTAATELLVNGDVVVGLLVNREGsplRLRAPSVILACGGF 224
                  56677888999999********************99999999884333234799*********95 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00045         1       1      29 [.      16      44 ..      16      47 .. 0.97
   2 ?   -1.6   0.0      0.54   1.2e+03     123     139 ..     212     228 ..     206     237 .. 0.84
   3 ?   -3.0   0.0       1.5   3.4e+03      28      55 ..     383     410 ..     372     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00045
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEk 29
                 i++G G aG  aa+ +++ag +++li++k
   CDO70844.1 16 IVVGSGHAGSCAALSARDAGCNRVLIVDK 44
                 89*************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.54
  Pyr_redox_3 123 yeAkkviiAtGefdkPn 139
                  ++A++vi+A G f+  +
   CDO70844.1 212 LRAPSVILACGGFEASK 228
                  789*********98766 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.5
  Pyr_redox_3  28 Ekgnignsiyrypkemtfispsftsekl 55 
                  +k++ + ++ ry k ++ +  + +++++
   CDO70844.1 383 DKEAFVRTVERYNKATRAFRAEHPEKRW 410
                  5779999999999999999988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3256.36
//
Query:       CDO70845.1  [L=299]
Description: hypothetical protein BN946_scf184801.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-43  147.2   0.5    1.6e-41  142.4   0.5    2.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.5e-36  125.0   0.1    5.9e-36  123.8   0.1    1.6  1  adh_short        short chain dehydrogenase
    1.2e-07   31.8   1.9    1.5e-07   31.5   0.5    1.7  2  KR               KR domain
  ------ inclusion threshold ------
      0.027   13.9   0.1       0.47    9.9   0.0    2.0  2  Epimerase        NAD dependent epimerase/dehydratase family
      0.045   13.6   1.3       0.14   12.0   0.4    1.9  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.16   11.1   0.2       0.28   10.3   0.0    1.5  2  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.5   5.5e-45   1.6e-41       4     233 ..      25     291 ..      20     292 .. 0.89

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 5.5e-45
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG............. CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..v..lecDVtdeeqvealveevvekfgklDilvnnagiapk............. 82 
                    gIG++iA+ lae+Ga+v +t +++e  +k++++++++++ +  +  l +DVtd+ +++a+ + +++k gkl+ilvnnag + +             
    CDO70845.1  25 TGIGWQIAQGLAENGAKVYITGRRKETlEKSADAFVAQHKGNgsIipLVLDVTDRGSIAAARDSLAAKEGKLHILVNNAGQTGPisswledpnspqr 121
                   69*************************9*********9986655469**********************************9988888888888877 PP

                   .....CSS-GGGH.-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC........CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGT. CS
  adh_short_C2  83 .....lkgpflet.sreefdraldvnlyslfllakaalplmkeg........gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkg. 163
                        l  ++ e  s e++++  +vn+ s+f ++ a+l l+++g        + ++n++sv++ + +++++ ay+ aKaa  +l++ +A e++ k+ 
    CDO70845.1 122 kdpetLGRSLFEGeSFESWANLYNVNTFSVFFVTTALLGLLAKGtedhpdytSCVINVTSVSGLMKLSQNHfAYNSAKAAASHLSKMMATEFALKKv 218
                   7777755555554388***********************999999999999899**********99888888*******************998763 PP

                   .EEEEEEEE--BHCTG.GGGSTT.HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 164 .iRvNavspgpikTla.asgikg.fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    +Rv av+pg+ + ++  ++i++   +  +++    p +r g++ee+a ++++Las++  +++Gq++vvDgG+
    CDO70845.1 219 pVRVCAVAPGVWESEMtYDKITDeLVDTVSKAVVPVPTRRSGKAEEIAGTVIYLASPAGCFTNGQEIVVDGGF 291
                   37**************656676544456666677789***********************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.1     2e-39   5.9e-36       2     190 ..      17     238 ..      16     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 2e-39
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.......... CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.......... 87 
                 ++lvtG++ GIG +ia+ la++Gakv++++r++e+le+ a+ + ++   + +++++ +Dvtdr ++ a+ +  ++k gkl++LvnNAG           
  CDO70845.1  17 IALVTGGGTGIGWQIAQGLAENGAKVYITGRRKETLEKSADAFVAQhkgNGSIIPLVLDVTDRGSIAAARDSLAAKEGKLHILVNNAGQtgpisswled 115
                 89***************************************99988888889*********************************************** PP

                 ...........S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH......HCTTEEEEEEEEGGGTSB-T.TBHHHHHHHHHHHHHHHHHHHHHG CS
   adh_short  88 ...........tgsgpfselseeewervievNltgvflltravlpaml......kqssGrIvnvsSvagkvpva.gvaaYsAsKaavagltrslakela 168
                             g++ f+  s e w ++++vN ++vf +t a+l  +             ++nv+Sv g++++  +  aY ++Kaa  +l++ +a e+a
  CDO70845.1 116 pnspqrkdpetLGRSLFEGESFESWANLYNVNTFSVFFVTTALLGLLAkgtedhPDYTSCVINVTSVSGLMKLSqNHFAYNSAKAAASHLSKMMATEFA 214
                 *****9999887888899999999**********************99555443334578*********8887615679******************** PP

                 GGT..EEEEEEEESSBSSHHHHHH CS
   adh_short 169 ptg..irvnavaPGlvdTdmakel 190
                  ++  +rv avaPG+ +++m+ ++
  CDO70845.1 215 LKKvpVRVCAVAPGVWESEMTYDK 238
                 **9999**************9766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.5   5.1e-11   1.5e-07       4      91 ..      19     105 ..      17     111 .. 0.83
   2 ?   -1.7   0.0      0.77   2.3e+03     133     160 ..     178     206 ..     168     232 .. 0.60

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.1e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHH.HHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedsk.aliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgv 91 
                 l+tGG  g+G ++a+ lae+ga+ + +++R++++ e+s+ a++a+ + +g ++  + +Dv+d+ +++a+ +++ a+e++++  ++ Ag 
  CDO70845.1  19 LVTGGGTGIGWQIAQGLAENGAK-VYITGRRKETLEKSAdAFVAQHKGNG-SIIPLVLDVTDRGSIAAARDSLAAKEGKLHILVNNAGQ 105
                 9********************96.78888887555555515666666655.6777789***********************99999985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.77
                 EEEEHHHHH-.-TT-HHHHHHHHHHHHHH CS
          KR 133 lfSSiagllg.sagqanYaaaNaflDala 160
                  ++S++gl+  s+ + +Y +a a    l 
  CDO70845.1 178 NVTSVSGLMKlSQNHFAYNSAKAAASHLS 206
                 56666666642444555655555444433 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00016      0.47       1      73 [.      18     104 ..      18     123 .. 0.69
   2 ?    2.3   0.0     0.033        98     137     172 ..     190     225 ..     140     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...........elveldltdrs....alerlfkee.qpdavihlAa 73 
                 +lVtG+   iG ++++ l+e+g +v    r++++ +++++  +               ld+tdr     a + l ++e + ++ ++ A+
  CDO70845.1  18 ALVTGGGTGIGWQIAQGLAENGAKVYITGRRKETLEKSAD--AfvaqhkgngsiIPLVLDVTDRGsiaaARDSLAAKEgKLHILVNNAG 104
                 59**********************9999999554444443..34589999998877788999988333333333444445666666666 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.033
                 --SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEE CS
   Epimerase 137 kpnspYaaaKlageklveayaaqyglnaiilrlfnl 172
                 + + +Y  aK+a+ +l + +a ++ l+ + +r++ +
  CDO70845.1 190 QNHFAYNSAKAAASHLSKMMATEFALKKVPVRVCAV 225
                 5677999*********99999999988888887765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   4.7e-05      0.14       4      42 ..      20      59 ..      17      70 .. 0.88
   2 ?   -0.3   0.0      0.29   8.7e+02      14      51 ..     209     248 ..     201     265 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.7e-05
                EE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHH CS
     3HCDH_N  4 viGaGt.mGagiaavfasagleVvlvdiseealekaleki 42
                v G Gt +G +ia+ +a++g +V ++ +++e+lek++++ 
  CDO70845.1 20 VTGGGTgIGWQIAQGLAENGAKVYITGRRKETLEKSADAF 59
                67888879**************************998876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.29
                 HHHHHHHTT-EEEEE-S-HHHHHHHH..HHHHHHHHCCTT CS
     3HCDH_N  14 iaavfasagleVvlvdiseealekal..ekieksleklve 51 
                 +a+ fa ++++V+++ +++   e+ +  +ki+++l   v+
  CDO70845.1 209 MATEFALKKVPVRVCAVAPGVWESEMtyDKITDELVDTVS 248
                 6778888888888888877665554311445555544444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.2e-05      0.28       2      72 ..      19      85 ..      18      93 .. 0.76
   2 ?   -3.4   0.1       1.4   4.2e+03     133     167 ..     178     212 ..     176     219 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.2e-05
                     EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHH CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerleka 72
                     lvtG+g  iG ++ + ++++  +k+++  r   +l + ++ +    +++k + +i+p++ dv+d+ +++ a
       CDO70845.1 19 LVTGGGTGIGWQIAQGLAEN-GAKVYITGRRKETLEKSADAFV---AQHKGNGSIIPLVLDVTDRGSIAAA 85
                     8***********98776665.5677777777777777666653...4445567799********9998766 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
                      S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEE CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakeseekktkfvvvR 167
                      n t+v G+ K+ ++ ++ + ak ++++ +k++++ 
       CDO70845.1 178 NVTSVSGLMKLSQNHFAYNSAKAAASHLSKMMATE 212
                      66788888888888877777777766666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1989.29
//
Query:       CDO70846.1  [L=524]
Description: hypothetical protein BN946_scf184801.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-11   42.0   0.1    1.7e-10   40.6   0.1    1.8  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   9.4e-15   1.7e-10       3      47 ..      77     124 ..      75     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 9.4e-15
  F-box-like   3 rLPdEiLlqIFsyLppsd..Llr..lalVCrrWrrvaldtplLWrrlvl 47 
                 +LP E+L +IF  L +++  + +  +++VCr Wr +al+tp LWrr++l
  CDO70846.1  77 QLPAEVLAHIFV-LGAEEdnMFPviVSHVCRAWRYIALHTPALWRRVTL 124
                 7**********7.5444224666436*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3750.58
//
Query:       CDO70847.1  [L=211]
Description: hypothetical protein BN946_scf184801.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.055   14.1   1.1      0.068   13.8   1.1    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
      0.076   12.8   0.0       0.23   11.2   0.0    1.7  2  DUF2785        Protein of unknown function (DUF2785)
        0.1   12.2   0.5       0.15   11.6   0.5    1.2  1  CobU           Cobinamide kinase / cobinamide phosphate guany


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.1   1.1e-05     0.068      91     217 ..      47     203 ..      13     206 .. 0.45

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                    EEES-........----TTTS----TTHHHHHHTT-C..CCCHCCH.S-HSCCCCHHHC....CCCHCHCCCGHH.........HHCCHHC....H CS
  Abhydrolase_6  91 vlldp..pp....talpagllaaalelllallallrl..lawlsre.plprlfladeda....daawrarlarla.........allaglg....l 160
                    v++++  pp     + +++ l+  l+l++a  ++  +  ++ ++++  + +++++++ +    +  w+                all++++    +
     CDO70847.1  47 VAVSSyyPPytmqDSMDPTPLSNSLPLHKASAKVDQKflPTTVKMKpEVLQSLIHPPIMgehqRLMWALD----IdilkdnlhrALLDCRFnvgpE 138
                    5555544334433222222233333333333332222111111111212223333333212221111111....1112222222333333332222 PP

                    TTCCHHTT-TTGC....EEE....CTT-C..HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 161 lpaaawadlpvpl....lvl....ggeDp..lvprllerllaqagarlpvvlpgaGHlphleepdev 217
                     +   w+ l+v+l    +++    +g+    l ++ +++  + ++ +l + l++a H++h eep+++
     CDO70847.1 139 PSKKVWPNLRVHLiycdMTFrtcaWGATVvwLEHQRADQEYR-RHLEL-HKLERANHFVHWEEPERF 203
                    236677777777743342222322233335533333666666.89999.***************988 PP

>> DUF2785  Protein of unknown function (DUF2785)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.28   1.7e+03     101     128 ..      94     121 ..      74     134 .. 0.67
   2 ?   11.2   0.0   3.8e-05      0.23      88     123 ..     173     208 ..     163     211 .] 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
     DUF2785 101 kkltrtqsvlaadEdeRlatailallek 128
                 ++l+ + ++ +++E +Rl+ a+   + k
  CDO70847.1  94 EVLQSLIHPPIMGEHQRLMWALDIDILK 121
                 4555666788899999997777544444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.8e-05
     DUF2785  88 kradailllelivkkltrtqsvlaadEdeRlatail 123
                 +rad+    +l+++kl+r +++++++E+eR+++ ++
  CDO70847.1 173 QRADQEYRRHLELHKLERANHFVHWEEPERFTSFLA 208
                 566777777899*******************98876 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   2.5e-05      0.15      33      67 ..     173     207 ..     159     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
        CobU  33 ealDeemaeRiarHrerRpaeWetveepldlaeal 67 
                 ++ D+e+++ ++ H+ +R +++  +eep+++++ l
  CDO70847.1 173 QRADQEYRRHLELHKLERANHFVHWEEPERFTSFL 207
                 567*************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1605.15
//
Query:       CDO70848.1  [L=327]
Description: hypothetical protein BN946_scf184801.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-12   48.3   3.7    2.2e-12   48.1   3.7    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0062   16.2   0.1      0.021   14.4   0.0    1.8  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.061   12.6   0.0       0.11   11.7   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   3.7   3.7e-16   2.2e-12       1     219 [.      30     321 ..      30     322 .. 0.57

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 3.7e-16
                    EEEE--GC.....GCHHHHHHHHCCT...CEEEEE--TTS.TS-GGCS--HHHC................HHHHHHHCCTT............... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag...vhvlapDlpGh.Grsdpppldledl................adlaalldelaa.............. 62 
                    v+l+HG+ +++ +++  p+++++a++   +  + + l+G+ G+++ +p+dl+ l                ++la++l+  ++              
     CDO70848.1  30 VVLIHGTCFHSAVYR--PMVPFAAEHnlrF--VLLNLRGYpGSTEYSPFDLDMLrgpsremqeqamaergLELAEFLRWYIEtanipqvlqtpggl 121
                    8*****777777776..8888888888445..99**************999664444544544444444444466666666688888889999999 PP

                    .TTSEEEEEETCHHH..HHHH..HHHCC.............EEEEES-.....----TTTS----TTHHHHHHTT-C...CCCHCCH...S-HSCC CS
  Abhydrolase_6  63 gggpvvlvGHSlGGa..lala..aapla...........lvvgvlldppp...talpagllaaalelllallallrl...lawlsre...plprlf 134
                    ++g + ++ +S G +  ++++  a+++a           l+v+ ++ p++    ++p++ +++++++l+a ++   +   ++  + +    l+ ++
     CDO70848.1 122 QTGGISVLSWSGGNWhtVSMFanAGKVAedtheqvsifaLDVSAYYPPYEildSIDPPPTFDPPRRPLHAIGGEVDPkyaPTVTK-MtaeTLR-DL 215
                    99999******99986633332344444766775555544444555553377645555555555555554444333212222221.1122222.33 PP

                    CCHHHC....CCCHCHCCCGHHHHCC......HHC....HTTCCHHTT-TTGCEEECTT-C.....HHHHCHHCCCH.......STTEEETCE... CS
  Abhydrolase_6 135 ladeda....daawrarlarlaalla......glg....llpaaawadlpvpllvlggeDp.....lvprllerlla.......qagarlpvvlpg 204
                     +++ +    +  w++  + +  +l         +          w+dl+v++ +++  D+     ++++++ r+++       ++  ++ ++l++
     CDO70848.1 216 THPPIMqeyqHLLWAVHPDVMNTYLHralydcR-FndgtGTLNKIWPDLRVHV-IFC--DMtlgqcAWAATVIRAGHqkanpehRRTLEV-HTLKD 306
                    332222223335555555555533333333221.12233222569******99.756..3333447444333333332434444455555.***** PP

                    SSS-HHHHSHHHHHH CS
  Abhydrolase_6 205 aGHlphleepdevae 219
                    a H++h eep+++++
     CDO70848.1 307 ANHFVHWEEPERFVR 321
                    ************997 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.6e-06     0.021       2      47 ..      29      72 ..      28     115 .. 0.87
   2 ?   -0.9   0.1      0.17     1e+03     240     257 .]     299     316 ..     283     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.6e-06
                   EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTT CS
  Abhydrolase_1  2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspap 47
                   ++v++hG +  s v++   ++p  a++  +++ll+lrG++ S+  +
     CDO70848.1 29 TVVLIHGTCFHSAVYRP--MVPFAAEHNLRFVLLNLRGYPGSTEYS 72
                   69***************..***********************9765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
                    EEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 240 krlvvisdagHlaflegp 257
                     +++++ da H++++e+p
     CDO70848.1 299 LEVHTLKDANHFVHWEEP 316
                    5678999********997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.9e-05      0.11       6      45 ..      29      68 ..      25      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
  Hydrolase_4  6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrs 45
                 +vvl+HG + hs  y  ++   a+++  ++ l+ rG+  s
   CDO70848.1 29 TVVLIHGTCFHSAVYRPMVPFAAEHNLRFVLLNLRGYPGS 68
                 8***********************************8555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2617.96
//
Query:       CDO70849.1  [L=567]
Description: hypothetical protein BN946_scf184801.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.4   0.1    0.00018   21.6   0.1    1.3  1  MATH      MATH domain


Domain annotation for each model (and alignments):
>> MATH  MATH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1     1e-08   0.00018      10     100 ..      54     163 ..      45     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1e-08
        MATH  10 gesryskveerfnipWrlkikrkng........flglyLrcnkeeele.....rkwsieveftlklvssngksvkkkdt..hkfeke..kgwgwgkfis 91 
                  +s+++k+   +   W++  + ++g        f+++yL c+ +  ++     +kws e+ f++++   + ++++kk+   h+f  +  ++wgw +f +
  CDO70849.1  54 AKSKVTKSPRFGDGRWQIMFYANSGivgtdgqtFVSVYLGCEPTIAEKesgvnGKWSREGLFNFSFEILRIAQFNKKEAhnHSFYYPgaQNWGWAQFAR 152
                 5566666666777789999999999999999***********98555567999********999999999999666665599**99999********** PP

        MATH  92 wdklekky..l 100
                 +d +++ +   
  CDO70849.1 153 RDLIQQHNaiR 163
                 ****9998432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3809.07
//
Query:       CDO70850.1  [L=443]
Description: hypothetical protein BN946_scf184801.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-58  197.4   0.0    7.5e-42  142.9   0.0    2.3  2  GRASP55_65  GRASP55/65 PDZ-like domain
    0.00038   20.7   0.0        1.4    9.3   0.0    2.4  2  PDZ_2       PDZ domain
     0.0049   16.7   0.2      0.045   13.6   0.0    2.5  3  PDZ_6       PDZ domain


Domain annotation for each model (and alignments):
>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.1e-17   6.8e-14      40     118 ..      11      94 ..       5     101 .. 0.87
   2 !  142.9   0.0   1.3e-45   7.5e-42      24     136 ..     111     223 ..      96     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.1e-17
                 TTTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE......SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSS CS
  GRASP55_65  40 aaeevwhvldvlegsPaakagLvpksDYiiGldk.....gllkgeedlselveaheekelkLlvYnsesdevrevtvkpsrewG 118
                    +  hvl v+++sPa+++++ p+ D+++G +      +   + ++l  +ve+he ++l+Llv+ns+s+++r v ++psr+w 
  CDO70850.1  11 IPPRALHVLRVTPSSPASQTNIEPYFDFVVGYKGdsllsHNTVDPSELEGIVENHEGRTLNLLVWNSKSQQTRVVPIVPSRDWS 94 
                 556789**************************996544333338899************************************6 PP

  == domain 2  score: 142.9 bits;  conditional E-value: 1.3e-45
                 SSSSSSEEEEEEE-TTTTTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSSTT CS
  GRASP55_65  24 gqgllGlslrlaslekaaeevwhvldvlegsPaakagLvpksDYiiGldkgllkgeedlselveaheekelkLlvYnsesdevrevtvkpsrewGgega 122
                 + +llGls+r+++ e a+++vwhvldvlegsPa++agLvp+ D+iiG++ g+l  e d++++veah +k+l+++vY  + d++rev++ p+r+wGgeg+
  CDO70850.1 111 KPSLLGLSMRMCEPEFAMDNVWHVLDVLEGSPAESAGLVPYGDWIIGWSGGVLGAEGDFYDVVEAHIDKPLRVYVYSYDFDTIREVVLIPNRHWGGEGL 209
                 4589*********************************************************************************************** PP

                 TSEEEE-SGGGS-- CS
  GRASP55_65 123 lGcdvgyGlLhriP 136
                 lGc +g+GlLhriP
  CDO70850.1 210 LGCVFGFGLLHRIP 223
                 ************** PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0003       1.8      14      54 ..      14      63 ..       3      83 .. 0.82
   2 !    9.3   0.0   0.00023       1.4       3      39 ..     115     156 ..     113     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0003
                .-EEEEEE-TTSGGGGT.--T.........T-EEEEETTB--SSHHHHHH CS
       PDZ_2 14 ggvlvvsVkeggPaakaglka.........gDvilkvdgkkvksledlis 54
                + + v  V++++Pa++ ++++         gD +l+ + ++ ++le + +
  CDO70850.1 14 RALHVLRVTPSSPASQTNIEPyfdfvvgykGDSLLSHNTVDPSELEGIVE 63
                5678999**************99999999999999999888877766554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00023
                 ..XX------......-EEEEEE-TTSGGGGT..--TT-EEE CS
       PDZ_2   3 lGvsvsdeed....tggvlvvsVkeggPaakag.lkagDvil 39 
                 lG s+++ e+    ++   v +V eg+Pa+ ag +  gD i+
  CDO70850.1 115 LGLSMRMCEPefamDNVWHVLDVLEGSPAESAGlVPYGDWII 156
                 788888888888888888999************555588886 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.27   1.6e+03       2      13 ..      18      29 ..      17      34 .. 0.82
   2 ?   -1.2   0.0      0.33   1.9e+03      34      55 ..      54      75 ..      44      76 .. 0.81
   3 !   13.6   0.0   7.5e-06     0.045       2      27 ..     134     160 ..     133     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.27
       PDZ_6  2 VtaVdpgsPAdr 13
                V  V p sPA +
  CDO70850.1 18 VLRVTPSSPASQ 29
                67899*****98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.33
       PDZ_6 34 sladvaallrgsagesvvlvvr 55
                ++ ++  ++++++g+ + l+v+
  CDO70850.1 54 DPSELEGIVENHEGRTLNLLVW 75
                5688999999999999999986 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 7.5e-06
       PDZ_6   2 VtaVdpgsPAdrAG.lrvGDiilsvNG 27 
                 V  V +gsPA+ AG +  GD i+ + G
  CDO70850.1 134 VLDVLEGSPAESAGlVPYGDWIIGWSG 160
                 6789**********7777**9998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3040.96
//
Query:       CDO70851.1  [L=921]
Description: hypothetical protein BN946_scf184801.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.8   0.0       0.11   12.6   0.0    2.2  2  PPR_3     Pentatricopeptide repeat domain
      0.075   13.2   0.0       0.23   11.7   0.0    1.9  2  PPR_2     PPR repeat family


Domain annotation for each model (and alignments):
>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05      0.11       6      58 ..     695     746 ..     690     751 .. 0.89
   2 ?   -3.4   0.0       1.2     1e+04      32      49 ..     800     817 ..     798     826 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
       PPR_3   6 merkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailg 58 
                 m+++++++d+ + +  L+a+a+   +k+a + lerm + g++P +v++  ++ 
  CDO70851.1 695 MKQRNMRMDMRDVNVALSAIARHAPQKAADY-LERMIESGLQPDIVSFGTVIH 746
                 99*****************999999998877.9***************98875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
       PPR_3  32 klalevlermkkkgikPt 49 
                 + a+e++erm   ++ P+
  CDO70851.1 800 EYAEETVERMLDLRVIPS 817
                 57999*****88888775 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.6e-05      0.23      18      46 ..     718     746 ..     711     750 .. 0.89
   2 ?   -3.2   0.1       1.1     1e+04       7      27 ..     823     842 ..     820     848 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.6e-05
       PPR_2  18 kveeAfklfneMkkrglePnsyTysilik 46 
                 ++++A + ++ M + gl+P+ +++ ++i+
  CDO70851.1 718 APQKAADYLERMIESGLQPDIVSFGTVIH 746
                 578999*********************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
       PPR_2   7 NtlIsglckkgkveeAfklfn 27 
                 N+++ + ++++++ +A+k+++
  CDO70851.1 823 NAVM-AALRAEAPVKAYKFWK 842
                 6666.4568888899999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 5748.63
//
Query:       CDO70852.1  [L=589]
Description: hypothetical protein BN946_scf184801.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.017   14.2   0.1      0.048   12.7   0.1    1.8  1  Fungal_trans  Fungal specific transcription factor domain
       0.13   12.7   0.1       0.67   10.5   0.0    2.2  2  HSCB_C        HSCB C-terminal oligomerisation domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.3e-06     0.048       2      58 ..     217     270 ..     216     336 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-06
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayasplll.lailalGalfsesetkes 58 
                    +ff+ ++p+ p +hkpsf+ +     +    + +pl++ l++  ++++++++ +  s
    CDO70852.1 217 ALFFDFVYPLTPCVHKPSFMADV----HARREERDPLFFaLVMSTVASTLVQTCHEAS 270
                   58*********************....5555555555554888888888887766554 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.5e-05      0.67      36      74 ..       7      47 ..       3      49 .. 0.77
   2 ?   -2.3   0.0      0.72   6.5e+03      36      57 ..     474     499 ..     472     505 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.5e-05
                HHHHHHHHHHHHHHH..HTT.-HHHHHHHHHHHHHHHHHHHH CS
      HSCB_C 36 eerieeleaeleeaf..ekk.dleaaadllrrlrYlekikee 74
                ++ i e++++l ++     + + ++aa+l++r rYl +++e+
  CDO70852.1  7 QAAITECVSSLLRLSfaP-SdRGNQAAMLVVRARYLRRLQEA 47
                566777777777665542.33788****************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHTT....-HHH CS
      HSCB_C  36 eerieeleaeleeafekk....dlea 57 
                 e+ ++el+++l+  ++++    d ea
  CDO70852.1 474 EQYRDELITSLQGSIDEHrvaeDREA 499
                 67788888888888855544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4185.90
//
Query:       CDO70853.1  [L=339]
Description: hypothetical protein BN946_scf184801.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-23   81.0   0.1    5.4e-12   45.6   0.0    2.1  2  ThiF      ThiF family


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   1.6e-12   2.9e-08      14      72 ..       4      62 ..       1      71 [. 0.94
   2 !   45.6   0.0     3e-16   5.4e-12      75     224 ..      99     326 ..      98     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.6e-12
                HHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSB CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 14 ekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkp 72
                 ++r++++l+v + g+  e++kn++l+G+gkl +vD + +  ++l   f fr++d+Gk+
  CDO70853.1  4 YRMRNATILVVRLKGVATEAIKNIVLAGIGKLIVVDSEDVAEEDLGASFFFRDDDVGKK 62
                6899*****************************************************96 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 3e-16
                 HHHHHHHHHT-TTSEEEEEES-CCGCC.S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-T..GGS.E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
        ThiF  75 evaaealqeinpdveveavteritdet.vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldp..ssted 170
                 +va+ +++++np v vea+ +    e    + ll++vD+V+ + + +++   +n+ac++ ++p+  +gt g+ g++++ + +++ +    +   s++ +
  CDO70853.1  99 DVAKPRIESLNPLVAVEALSDASALEGdDFDRLLQGVDMVCVTDCDRSTLIRLNEACRRLSKPFYAGGTYGLLGYIFCDLLQHDYIAPSGQKdaSKNVK 197
                 79******************99988665689************************************************52222222222223344555 PP

                 ECCCCEEHHH...............................................................................HHHCTE-B-H CS
                 xxxxxxxxxx...............................................................................xxxxxxxxxx RF
        ThiF 171 ptekkvplct...............................................................................siagnipaia 190
                 +t   vpl t                                                                                +      i+
  CDO70853.1 198 NTAVYVPLKTalqhrwtgmtrrqtkelnpaivfavlavweyqavhqgvlpddpsaaaelesiasrliaeaqvnrqtlpsmprelidlatTA---AHEIS 293
                 555555555588888888888888888899999*******************************999999999999998888888655433...347** PP

                 HHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 191 tttavvaglaalellkllsgkeklenslltqvdl 224
                 +++avv+gl+a+++lk+l ++e+  ++++ ++d+
  CDO70853.1 294 PVCAVVGGLLAQDILKALAAREPPIANFF-TFDG 326
                 ******************99999999999.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2426.47
//
Query:       CDO70854.1  [L=510]
Description: hypothetical protein BN946_scf184801.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-07   29.4   0.0    3.5e-06   27.2   0.0    2.0  1  Mur_ligase_M  Mur ligase middle domain
     0.0072   16.6   0.0      0.033   14.4   0.0    2.2  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.9e-10   3.5e-06       1     103 [.      27     173 ..      27     270 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.9e-10
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC..........................................SS-THHHHHHHHHHHHHTT-SEEEEE CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg..........................................ttnneiglpktlaemekkeaeyavlE 55 
                   v+GtnGK ++  ++ +il++    + t                                              n e+ +  +++ +e++ ++++vlE
    CDO70854.1  27 VAGTNGKGSVCAVVSSILSATSPPFVTGRfnsphlvsildcicidnapvsnevyttarelvertnaengiaASNFELLTCTAFLIFERAAVDVVVLE 123
                   89*******************7777777788888****************************999999999555666666666688889******** PP

                   --HCHHHCTTTCCH.CBES....EEEE---TSTTHHHH.SSHHHHHHHHHHHHH CS
  Mur_ligase_M  56 vsshglgekrlegl.lkpd....vavitnispdHldfh.gtlenyaeaKaelfe 103
                   v++     +rl+++ + pd    v ++t ++ dH  f+  t+e++a++Ka + +
    CDO70854.1 124 VGMG----GRLDATnAVPDdcvlVSALTAVDLDHQAFLgNTIEAIAREKAAIAR 173
                   ****....555555544443333788999999*****9789*********9976 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.8   1.6e+04      61      70 ..     185     194 ..     161     204 .. 0.60
   2 !   14.4   0.0   3.7e-06     0.033      11      40 ..     325     354 ..     304     369 .. 0.75
   3 ?   -3.5   0.0       1.5   1.3e+04      39      49 ..     471     486 ..     461     503 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.8
                   HHHHHHHHCC CS
  Mur_ligase_C  61 hdefgrlasa 70 
                   h+e +++a a
    CDO70854.1 185 HPEAAEAARA 194
                   4444444433 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.7e-06
                   TTTEEEEEET--SHHHHHHHHHHHHHHSSS CS
  Mur_ligase_C  11 adgvtvidDyahnpdslsaalkalreiapd 40 
                     g+tv+ D ahnp+s+sa+ + l +++++
    CDO70854.1 325 PLGITVLADGAHNPASASALANYLLDLFQK 354
                   6689******************99998874 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.5
                   S.....SSEEEEEEEE CS
  Mur_ligase_C  39 p.....dkrlilvfgp 49 
                   +     +  l++v+g+
    CDO70854.1 471 ArrrdgEDALVVVAGS 486
                   2333335667777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3637.00
//
Query:       CDO70855.1  [L=1036]
Description: hypothetical protein BN946_scf184801.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-51  169.7   2.6    5.5e-18   64.5   0.2    4.9  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    6.3e-13   48.4   0.1    9.1e-05   22.2   0.0    4.6  5  RRM_occluded  Occluded RNA-recognition motif
    2.9e-06   27.3   0.1        1.7    8.8   0.0    5.1  4  RRM_7         RNA recognition motif
    0.00013   21.9   0.0        1.7    8.7   0.0    3.5  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
    0.00056   20.0   2.4     0.0014   18.6   0.0    2.7  4  Suf           Suppressor of forked protein (Suf)
     0.0062   16.8   1.4       0.68   10.1   0.0    3.6  3  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra
  ------ inclusion threshold ------
      0.045   13.8   4.7       0.46   10.5   0.1    4.1  4  RRM_3         RNA binding motif
      0.055   13.9   0.0        3.4    8.2   0.0    3.0  2  RBFA          Ribosome-binding factor A
       0.11   12.0   1.4       0.23   11.0   1.4    1.6  1  Lsm_interact  Lsm interaction motif
        1.2   10.2   0.0        1.2   10.2   0.0    5.7  6  TPR_14        Tetratricopeptide repeat
        3.8    8.1  11.8        4.1    8.0   0.0    4.2  4  TPR_19        Tetratricopeptide repeat
        8.9    7.1  10.3        0.3   11.8   2.9    2.4  3  UBA2_C        SUMO-activating enzyme subunit 2 C-terminus


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         4     6e+03      40      53 ..     306     319 ..     293     320 .. 0.82
   2 !   32.1   0.0     5e-11   7.5e-08       1      69 [.     626     690 ..     626     691 .. 0.95
   3 !   50.2   0.0   1.1e-16   1.6e-13       1      65 [.     700     763 ..     700     768 .. 0.94
   4 !   64.5   0.2   3.7e-21   5.5e-18       1      68 [.     791     857 ..     791     859 .. 0.96
   5 !   19.1   0.0   5.6e-07   0.00084       1      69 [.     885     948 ..     885     949 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4
                 EEEEEEESSHHHHH CS
       RRM_1  40 gfafVeFeskedAe 53 
                  +++V+F  + dAe
  CDO70855.1 306 WTGYVDFLRQQDAE 319
                 579*****999998 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 5e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fV +Lp  + e+eL +lF+++G+i++ik+      ++  +a VeF  +++  +Al   ++k ++ +e+
  CDO70855.1 626 VFVADLPAGTQEDELAALFKDCGSIREIKITQL---PNSLVATVEFMERDSVPAALT-KDKKRIREQEI 690
                 8*******************************8...********************9.99999988776 PP

  == domain 3  score: 50.2 bits;  conditional E-value: 1.1e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklg 65 
                 l+V+n+p+d+++  +++lF+k+G+i +++ ++++ +++++f++V+++++ +Ae+Ale l+g+ +g
  CDO70855.1 700 LYVTNFPEDADDTFIRTLFGKYGEIFDVRWPSKKFKSTRRFCYVQYTTPASAEAALE-LHGTDMG 763
                 8********************************************************.**96654 PP

  == domain 4  score: 64.5 bits;  conditional E-value: 3.7e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 ++V +L++ vt+e+L+ lF+ +G +k+++++ d +g+ kgfafVeFe++ +A++Al+  n+ +l++r+
  CDO70855.1 791 VYVAGLSKLVTKEDLENLFKTYGTVKDVRMILDDKGRFKGFAFVEFETEQEARAALA-ANNHELKKRR 857
                 8********************************************************.9999999887 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 5.6e-07
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 + V+nLp  + e  L + ++k  ++k+++++ d      g a Ve e+  +A k l + +   ++g++l
  CDO70855.1 885 VRVKNLPAGTQEGLLQQALEKHAKVKRVEVFAD-----LGEAEVELENAAEAGKLLLRPDSIVFNGNTL 948
                 67*******************************.....******************9999999999987 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.4   6.6e+03      11      46 ..     525     564 ..     524     568 .. 0.69
   2 ?   -1.5   0.0       1.6   2.4e+03       6      49 ..     628     672 ..     624     691 .. 0.72
   3 ?    3.3   0.0      0.05        74       3      69 ..     699     769 ..     697     771 .. 0.74
   4 !   16.6   0.0   3.5e-06    0.0053       4      70 ..     791     860 ..     788     864 .. 0.90
   5 !   22.2   0.0   6.1e-08   9.1e-05       5      70 ..     886     950 ..     882     955 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.4
  RRM_occluded  11 Dtvnkariralveek....egeikkivLvpdheGAivefk 46 
                   D+v +a+i+          +++i   +L ++ ++  v ++
    CDO70855.1 525 DRVERAQIQVNARRAkeaeKAQIAAAQLIAETQATAVSVA 564
                   7788888876666555555578888888888887777665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
  RRM_occluded   6 llplsDtvnkariralveekegeikkivL..vpdheGAivefkdek 49 
                   + +l+    ++++ al+++  g+i++i +   p+   A vef ++ 
    CDO70855.1 628 VADLPAGTQEDELAALFKDC-GSIREIKItqLPNSLVATVEFMERD 672
                   55667777788889999999.9998665522688888888887665 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.05
  RRM_occluded   3 tisllplsDtvnkariralveekegeikki.....vLvpdheGAivefkdekiagkasLaLdgsef.egkklr 69 
                   t+ + ++++   ++ ir+l+ ++ gei ++        +  + + v+++  ++ + a+L+L+g+++ eg+kl 
    CDO70855.1 699 TLYVTNFPEDADDTFIRTLFGKY-GEIFDVrwpskKFKSTRRFCYVQYTTPAS-AEAALELHGTDMgEGRKLA 769
                   77788888888888899999999.88888822222345666778888887765.6999*****9995699986 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 3.5e-06
  RRM_occluded   4 isllplsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrc 70 
                   + + +ls  v+k+ +++l++++ g +k++ +  d +G     A+vef+ e+  ++a+La +++e++++++ +
    CDO70855.1 791 VYVAGLSKLVTKEDLENLFKTY-GTVKDVRMILDDKGrfkgfAFVEFETEQE-ARAALAANNHELKKRRMAV 860
                   677889999*************.************9999999*****99886.6************999866 PP

  == domain 5  score: 22.2 bits;  conditional E-value: 6.1e-08
  RRM_occluded   5 sllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                    + +l+    +  +++ +e++ +++k++ +++d + A ve+++++ agk++L  d++ f+g++l++
    CDO70855.1 886 RVKNLPAGTQEGLLQQALEKH-AKVKRVEVFADLGEAEVELENAAEAGKLLLRPDSIVFNGNTLQI 950
                   556666666677788999999.*****************************************997 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.63   9.4e+02      54      72 ..     362     380 ..     339     385 .. 0.85
   2 ?    4.1   0.0     0.034        51       2      28 ..     624     650 ..     623     664 .. 0.92
   3 !    6.5   0.0    0.0058       8.7       5      38 ..     701     735 ..     698     755 .. 0.80
   4 !    8.8   0.0    0.0012       1.7       2      76 ..     789     855 ..     788     872 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.63
       RRM_7  54 flvfedeksvkaLleacte 72 
                   v+e+ +sv+ Ll++ ++
  CDO70855.1 362 QAVYEKAQSVRPLLNEVEQ 380
                 569***********99875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.034
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkv 28 
                 + vFv  lP+  +e+el a fk  g++
  CDO70855.1 624 CTVFVADLPAGTQEDELAALFKDCGSI 650
                 78********************99876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0058
       RRM_7   5 FvGGlPiDiteeelkatfkefgkv.lvdwPkkaes 38 
                 +v   P D +++ + + f+++g++  v wP k+ +
  CDO70855.1 701 YVTNFPEDADDTFIRTLFGKYGEIfDVRWPSKKFK 735
                 78889*****************9736****99433 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0012
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleacteeeee 76 
                 r v+v Gl   +t+e+l++ fk++g+v+       ++       +   kg++f+ fe+e+  +a l a ++e ++
  CDO70855.1 789 REVYVAGLSKLVTKEDLENLFKTYGTVK-----DVRMILD---DKGRFKGFAFVEFETEQEARAALAANNHELKK 855
                 789**********************985.....2222222...22335799999999999888888777776644 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0023       3.4      20      52 ..     643     677 ..     632     678 .. 0.86
   2 !    8.7   0.0    0.0011       1.7      20      53 .]     717     755 ..     707     755 .. 0.83
   3 ?    0.7   0.0      0.37   5.5e+02      38      53 .]     831     846 ..     809     846 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0023
  Nup35_RRM_2  20 hFasfGeIvkhyvp..kevsvmyvkfesekdaekA 52 
                   F+++G I ++ ++  +++ v++v+f+ +++   A
   CDO70855.1 643 LFKDCGSIREIKITqlPNSLVATVEFMERDSVPAA 677
                  59************9999*********99986666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
  Nup35_RRM_2  20 hFasfGeIvkhyvp.....kevsvmyvkfesekdaekAL 53 
                   F  +GeI +   p     + + + yv++ ++ +ae AL
   CDO70855.1 717 LFGKYGEIFDVRWPskkfkSTRRFCYVQYTTPASAEAAL 755
                  57889***9966666666699****************98 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.37
  Nup35_RRM_2  38 vmyvkfesekdaekAL 53 
                  +++v+fe+e +a  AL
   CDO70855.1 831 FAFVEFETEQEARAAL 846
                  79**********9997 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.8   2.6e+03     122     166 ..      83     131 ..      80     229 .. 0.61
   2 ?   -3.3   0.0       4.6   6.9e+03      90     129 ..     182     223 ..     173     252 .. 0.64
   3 ?   -0.9   0.0      0.87   1.3e+03      72     119 ..     305     350 ..     303     382 .. 0.59
   4 !   18.6   0.0   9.6e-07    0.0014      55     214 ..     451     605 ..     429     657 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
         Suf 122 dlssilklekRmeelfpe....dskleqfvdRYklknldpikkrelkse 166
                 dl+ +l l +R e+ + +    +++le +vdRY+     ++ ++ l+++
  CDO70855.1  83 DLKMVLDLFTRAEQDYLSisilQKHLEFLVDRYEHFVESETRPDGLEEM 131
                 6666777777777777666777777777777776555555554444444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.6
         Suf  90 Rvlfekvvsk.lskeke..akelykkfleyestfgdlssilkl 129
                  ++ e+++ + l++ ++   +e ++ + ++ +++   ++  +l
  CDO70855.1 182 AAIVETMLLErLQQ-PHanYEETFQAYSSFTTNYRPHDQYESL 223
                 56666655441443.3224788999999999888765555444 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.87
         Suf  72 fvlkYldyLislnddnnaRvl.fekvvsklskekeakelykkfleyest 119
                 f   Y+d+L + + ++  ++l + + ++++       ely++++++  +
  CDO70855.1 305 FWTGYVDFLRQQDAEDDEQSLvYRRGLRSVPVSG---ELYARYMRFLER 350
                 5666777777777555555441445555554444...777777777554 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 9.6e-07
         Suf  55 AtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleyestfgdlssilklekRmeelfpedskleqfvdRYklk 153
                 A   +e  +K+++++      Y d Li+   ++ aR +f  + sk  +    + +++ ++ +e+ +g +++i+   +R+e      ++++  + R k  
  CDO70855.1 451 ALVLWEDTAKHYKNSYLAWTSYTDVLIQQHMHEDARKVFRDIASKNLDWS--EAVWEAWITFEQLHGTVEEINDALDRVER-----AQIQVNARRAKEA 542
                 666789999******9999********************99888866555..9********************99999975.....6888889999999 PP

         Suf 154 nldpikkrelksetkqeeekallqkkeeqaaslees........kvpqaqeskkrklesedssvkkPdk 214
                 +  +i++ +l+ et+ +  +   + +  q   + e+           +a+  +krk+e e      P++
  CDO70855.1 543 EKAQIAAAQLIAETQATAVSVAEATVPTQVGATAEPaamevdsgA--TAEAGSKRKAEVEG----TPES 605
                 999999999998888877775554444432222233234444331..22222222222222....2222 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4      0.13     2e+02      90     150 ..     514     574 ..     455     589 .. 0.73
   2 ?    0.1   0.0      0.54   8.1e+02       2      31 ..     624     652 ..     623     686 .. 0.82
   3 !   10.1   0.0   0.00045      0.68     118     166 ..     825     863 ..     796     870 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.13
    PHM7_cyt  90 gkkvdaidyyrekleeldeeieeerekvkkk.plgaaFvtfesersaaavakqakcaaqiqq 150
                 + +v+ i+   +++e+ + ++++ r+k+ +k +  aa    e++  a +va+ a++ +q+ +
  CDO70855.1 514 HGTVEEINDALDRVERAQIQVNARRAKEAEKaQIAAAQLIAETQATAVSVAE-ATVPTQVGA 574
                 5567788888888888888888888887555134666666666666666654.223334444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.54
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffeelypgkv 31 
                  Tv+v ++P  ++ e++l+ +f+++    +
  CDO70855.1 624 CTVFVADLPAGTQ-EDELAALFKDCGSIRE 652
                 69***********.6669****98755444 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00045
    PHM7_cyt 118 kkkplgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelA 166
                 k +++g aFv+fe+e++a a+++           +n++lk++++ v+lA
  CDO70855.1 825 KGRFKGFAFVEFETEQEARAALA----------ANNHELKKRRMAVTLA 863
                 34689*************99962..........2222334566777666 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.5      0.73   1.1e+03      45      91 ..     480     532 ..     471     544 .. 0.64
   2 ?   -0.3   0.0      0.75   1.1e+03      17      55 ..     713     756 ..     701     769 .. 0.78
   3 ?   10.5   0.1   0.00031      0.46       4      63 ..     791     854 ..     790     865 .. 0.76
   4 ?    0.0   0.0      0.59   8.8e+02      15      53 ..     896     934 ..     885     940 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.73
                 SSHHHHHHHHHHHHHC-B-CCTSSE....EEEE--HHHHH..HHHHHHHHHHH CS
       RRM_3  45 kedeeakkalekateaklkikdaev....tlelLeGeeEk..eywkkiledkq 91 
                 + +e+a+k++   + ++l   +a +    t+e L+G  E+  +++ ++  ++ 
  CDO70855.1 480 HMHEDARKVFRDIASKNLDWSEAVWeawiTFEQLHGTVEEinDALDRVERAQI 532
                 55788999999999986666655441111778888877753356666655554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.75
                 HHHHHCHCCS...-ECEE..EE-TTSSEEEEEESSHHHHHHHHH CS
       RRM_3  17 dikellsklg...evayv..dyekgdkegevrFkedeeakkale 55 
                  i++l+ k+g   +v++    ++++   ++v++ ++ +a++ale
  CDO70855.1 713 FIRTLFGKYGeifDVRWPskKFKSTRRFCYVQYTTPASAEAALE 756
                 58889999995555566433588888999999999999999887 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00031
                 EEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSE.....EEEEESSHHHHHHHHHHHHHC-B- CS
       RRM_3   4 lklsGlnkelsredikellsklgevayvdyekgdke.....gevrFkedeeakkalekateaklk 63 
                 + ++Gl+k +++ed+ +l++ +g+v+ v +  +dk      + v F++++ea++al +  +  lk
  CDO70855.1 791 VYVAGLSKLVTKEDLENLFKTYGTVKDVRMILDDKGrfkgfAFVEFETEQEARAALAANNHE-LK 854
                 5789*******************9998888777764333336799****9999998766544.33 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.59
                 HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHH CS
       RRM_3  15 redikellsklgevayvdyekgdkegevrFkedeeakka 53 
                    ++++l+k+ +v+ v++  +  e+ev  +++ ea k+
  CDO70855.1 896 EGLLQQALEKHAKVKRVEVFADLGEAEVELENAAEAGKL 934
                 5568899999*****999999999999999999887665 PP

>> RBFA  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0023       3.4      35      91 ..     615     670 ..     601     694 .. 0.83
   2 ?    2.0   0.0      0.18   2.8e+02      23      49 ..     900     926 ..     884     937 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
                 EEESTTSSEEEEEEEESS-HHHHHHHHHHHHHTHHHHHHHHHHHC-SSSG-EEEEES CS
        RBFA  35 VkvsrDlskakVyvsvlgseeekeevlkaLkkaagflrrelakrlklrktPeLkFvl 91 
                 Vk++rD ++++V+v  l+    +e+ l+aL k  g +r+  + +l    + +++F++
  CDO70855.1 615 VKLKRDRENCTVFVADLPAG-TQEDELAALFKDCGSIREIKITQLPNSLVATVEFME 670
                 9************9977755.56667799*********9887777777777777765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
                 HCCTGHHCEEEEEEESTTSSEEEEEEE CS
        RBFA  23 dprlgklvtiteVkvsrDlskakVyvs 49 
                 ++ l+k+ ++++V+v +Dl  a+V ++
  CDO70855.1 900 QQALEKHAKVKRVEVFADLGEAEVELE 926
                 6678779***************99655 PP

>> Lsm_interact  Lsm interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   0.00015      0.23      11      19 .]    1026    1034 ..    1026    1034 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
  Lsm_interact   11 DDFRKMFLK 19  
                    DDFRKM+L+
    CDO70855.1 1026 DDFRKMLLG 1034
                    9*******7 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.9   5.8e+03      18      39 ..       8      32 ..       6      37 .. 0.71
   2 ?   -1.8   0.5       5.5   8.3e+03       4      30 ..     258     286 ..     255     293 .. 0.71
   3 ?   -2.5   0.3       9.3   1.4e+04       3      27 ..     340     364 ..     339     373 .. 0.55
   4 ?   10.2   0.0   0.00078       1.2       3      41 ..     468     507 ..     467     510 .. 0.81
   5 ?   -2.1   0.7         7     1e+04       6      23 ..     528     545 ..     525     560 .. 0.77
   6 ?    0.8   0.2      0.82   1.2e+03       2      25 ..     913     936 ..     912     937 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.9
      TPR_14 18 deAiallrrala...laPddaeawl 39
                ++A+++l ++l+    +P d+ ++ 
  CDO70855.1  8 ADALEALSAILEsltENPYDLSLHA 32
                5788999998886656787777665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.5
      TPR_14   4 llalaeallalGdpde..Aiallrralal 30 
                 ++ + +a++++ +p+      l++ra a 
  CDO70855.1 258 YAYYIAAERRRKNPESfvLKGLYERAAAE 286
                 67778888888888877666777777664 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 9.3
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 +++++ ++l++l   +eA+a  +++
  CDO70855.1 340 LYARYMRFLERLLVSEEAAAQIQAV 364
                 5667777777664444444444444 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00078
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd.daeawlll 41 
                 a+  + ++l ++  +++A++++r++ +++ d ++++w ++
  CDO70855.1 468 AWTSYTDVLIQQHMHEDARKVFRDIASKNLDwSEAVWEAW 507
                 56678899*******************9865266777765 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 7
      TPR_14   6 alaeallalGdpdeAial 23 
                 ++a++  ++++ +eA+++
  CDO70855.1 528 ERAQIQVNARRAKEAEKA 545
                 678888888888888874 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.82
      TPR_14   2 eallalaeallalGdpdeAiallr 25 
                 e+ ++l+ea+ +l++ +eA +ll 
  CDO70855.1 913 EVFADLGEAEVELENAAEAGKLLL 936
                 67899**************99885 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.4   2.2e+03      42      60 ..       8      26 ..       5      35 .. 0.69
   2 ?    8.0   0.0    0.0027       4.1       9      61 ..     450     503 ..     448     507 .. 0.86
   3 ?   -2.4   0.8       4.7   7.1e+03      31      46 ..     529     544 ..     521     556 .. 0.80
   4 ?    5.1   0.5     0.022        32      13      48 ..     898     935 ..     896     938 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
      TPR_19 42 deAealLdalpeedpddar 60
                ++A ++L+a++e+   +++
  CDO70855.1  8 ADALEALSAILESLTENPY 26
                5777777777777666544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0027
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                 +Al l e   +++ ++  a+  + ++l+++   ++A+++  ++  ++ d+ +++
  CDO70855.1 450 NALVLWEDTAKHYKNSYLAWTSYTDVLIQQHMHEDARKVFRDIASKNLDWsEAV 503
                 6777778888899999999999**********************9999974555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
      TPR_19  31 LAeallalgqldeAea 46 
                  A++++++ + +eAe+
  CDO70855.1 529 RAQIQVNARRAKEAEK 544
                 5888888888888886 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.022
      TPR_19  13 lleqalqedpk..naearllLAeallalgqldeAealL 48 
                 ll+qal++ +k    e+ ++L ea ++l + +eA +lL
  CDO70855.1 898 LLQQALEKHAKvkRVEVFADLGEAEVELENAAEAGKLL 935
                 899***9999999*********************9988 PP

>> UBA2_C  SUMO-activating enzyme subunit 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.9    0.0002       0.3      48      88 ..     575     616 ..     536     622 .. 0.82
   2 ?   -2.5   0.1         6   8.9e+03      61      89 ..     760     788 ..     748     790 .. 0.69
   3 ?   -3.0   0.0       8.1   1.2e+04      45      69 ..     834     858 ..     832     870 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
      UBA2_C  48 deEesass.adaeaesgstKRKldedteeastKrkRleqsaa 88 
                  +E++a   ++ ++++++ KRK++ + +  s+K++R+eq+++
  CDO70855.1 575 TAEPAAMEvDSGATAEAGSKRKAEVEGTPESSKKARVEQPVK 616
                 56766654166788999**********************875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6
      UBA2_C  61 esgstKRKldedteeastKrkRleqsaae 89 
                  + ++ RKl    + +  +++R++ +a e
  CDO70855.1 760 TDMGEGRKLAVYISDPERRKERTDSDADE 788
                 55677788888888888888888887754 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8.1
      UBA2_C  45 VdsdeEesassadaeaesgstKRKl 69 
                 V+ + E++a +a a+ +   +KR++
  CDO70855.1 834 VEFETEQEARAALAANNHELKKRRM 858
                 7778888898888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1036 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1137  (0.0634168); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.00u 0.36s 00:00:01.36 Elapsed: 00:00:00.60
# Mc/sec: 5233.51
//
Query:       CDO70856.1  [L=341]
Description: hypothetical protein BN946_scf184801.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2204.99
//
Query:       CDO70857.1  [L=1106]
Description: hypothetical protein BN946_scf184801.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-12   47.1   6.0    5.6e-11   42.8   0.0    2.9  2  AAA_15        AAA ATPase domain
    2.5e-11   43.4   8.4    2.5e-11   43.4   8.4    3.7  3  SMC_N         RecF/RecN/SMC N terminal domain
    2.6e-11   44.4  29.5    2.6e-11   44.4  29.5    5.2  3  AAA_23        AAA domain
     0.0003   20.5   0.1     0.0013   18.4   0.1    2.0  2  AAA_29        P-loop containing region of AAA domain
    0.00064   19.6   2.3     0.0011   18.8   0.2    2.4  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0051   17.0   1.9     0.0051   17.0   1.9    7.5  6  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
     0.0079   16.3   8.7     0.0079   16.3   8.7    6.5  6  UPF0242       Uncharacterised protein family (UPF0242) N-term
  ------ inclusion threshold ------
      0.015   14.8   0.2      0.071   12.7   0.2    2.1  1  DUF3145       Protein of unknown function (DUF3145)
       0.11   13.0   0.0       0.11   13.0   0.0    4.0  3  ABC_tran      ABC transporter
        6.9    6.2  79.4     0.0076   15.9  16.8    4.7  3  Filament      Intermediate filament protein


Domain annotation for each model (and alignments):
>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   3.1e-14   5.6e-11       3     261 ..     102     474 ..     101     505 .. 0.68
   2 ?   -1.5   8.3      0.88   1.6e+03     104     207 ..     762     873 ..     703     982 .. 0.44

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.1e-14
      AAA_15   3 IkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn.................kkvikiekedleifeniseskdikIdvef. 83 
                 I++i+   F ++k+ + +l ++++++iG+N+sGKS +l al + l  k                     + +++++++  e ++ ++  ++i I+  f 
  CDO70857.1 102 IESIEMHQFMCHKYLTFSLGPQINFIIGHNGSGKSAVLSALTVALGGKATSTgrgsglksfiregqavsEVTVVLKNQGEEAYRPKEYGRSIVITRRFt 200
                 89999999**************************************994444889999999*******988999999*********************8 PP

      AAA_15  84 ................................................................................................... 83 
                                                                                                                    
  CDO70857.1 201 kegassykiksrdgkvistkreelqaicdhmniqvdnpmniltqdsarqflsastpadkykfflkgtqlsqlseeyqtcmenisqtakvlkrkaevipd 299
                 888888888888888888888888888888888888888887777777777777777777777777776666666666666666666666555554444 PP

      AAA_15  84 ......aekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkl 176
                       +                                                                                            
  CDO70857.1 300 ledaleE-------------------------------------------------------------------------------------------- 306
                 4333221............................................................................................ PP

      AAA_15 177 eeslkkee........................................................................................... 184
                        +                                                                                           
  CDO70857.1 307 -------Ararweeaekareqknksaelkrelawahvaskeeeltkqlnevahirhrvqkceaqiadaeaerlacnekvalleeeldalgnvenltrrr 398
                 .......02222222222222222222222222222222222222222222222223333333333333333333333333333344444444444444 PP

      AAA_15 185 .elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk 261
                  el+ ++k++ +kl    a+ ++  + ++  +s++ +l +ki +e  q +le +++ek ++    l++++  lae+++
  CDO70857.1 399 eELGVLIKANKTKLSQLRADEKSILDSKTGVDSTIAELEKKIADE--QARLETRSKEKRDRATAQLQQLNAALAENEE 474
                 599999999999999999999999999999999999999999998..7788999999999999999999999988877 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.88
      AAA_15 104 adlllkkkesdlkktikdkklklkknelsdekisvekkks....kkelpkekeeklekekeelkidkedlkklikkleeslkkee....elknvlksai 194
                 ++ +++ k+++lk+ +++ +l+l+++   +++  +++  +    +k+  + ++e l ke e+++ d+  + +  +kl++++ +++    +++  l++a 
  CDO70857.1 762 QEREVNAKIRQLKTQVNNIQLELNEDL-PVNIQALQEALNeqrtEKDNIVHQYEQLIKEREKVQQDQRPIMEEFEKLRQQIAQHSdkrsTISDRLSAAV 859
                 333344444444444444444443221.11111111111111112222222222222222222222222222222222233333333332222222111 PP

      AAA_15 195 .iklllisakRnvs 207
                  + ++ +++ +++s
  CDO70857.1 860 tERMKADNSIKHFS 873
                 01222222222222 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   8.4   1.4e-14   2.5e-11       2     120 ..     102     216 ..     101     473 .. 0.88
   2 ?   -2.7   0.0       1.9   3.3e+03     172     195 ..     588     613 ..     584     624 .. 0.80
   3 ?   -7.1  12.1        10   1.8e+04      77     198 ..     743    1077 ..     737    1095 .. 0.59

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.4e-14
                 EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSC...E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
       SMC_N   2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekee...v 97 
                 ++++e+++F     k  +  + +++++i+G+NGSGKs +l A+   LG +++++ r + l++ i +      +   ev+++++n+++++   ke    +
  CDO70857.1 102 IESIEMHQFMCH--KYLTFSLGPQINFIIGHNGSGKSAVLSALTVALGGKATSTGRGSGLKSFIRE-----GQAVSEVTVVLKNQGEEAYRPKEYgrsI 193
                 788999999888..799999*********************************************8.....455678899999999995555543344* PP

                 EEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  98 sisrrvkrkgeseykingkevtk 120
                 +i+rr  ++g s+yki+ ++ + 
  CDO70857.1 194 VITRRFTKEGASSYKIKSRDGKV 216
                 ****************6655432 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
                 -HHHHHHHHHHHHHHCT..TSEEEEE CS
                 xxxxxxxxxxxxxxxxx..xxxxxxx RF
       SMC_N 172 Deknvkkvaellkeksk..naQfivi 195
                 D++ + ++a++l+e+ +  n+Q+i+ 
  CDO70857.1 588 DARDRDALARILHESGNgrNSQIIIS 613
                 8899999*****98765226999986 PP

  == domain 3  score: -7.1 bits;  conditional E-value: 10
                  EEEEEEEEETTEE...SSSSSSC..EEEEEEEETTSEEEEEETTE.EE-HHHHHHHHHCTT-STT................................ CS
                  xxxxxxxxxxxxx...xxxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx................................ RF
       SMC_N   77 aeveitfdnedkk...lkiekee..vsisrrvkrkgeseykingk.evtkkevsellesagiske................................ 135 
                  aev+ t++ ++++   l  ++ e   +i++ + + ++ + ++n+   v+ + ++e l++++ +k+                                
  CDO70857.1  743 AEVKATYSRSQSTtseLMRQEREvnAKIRQLKTQVNNIQLELNEDlPVNIQALQEALNEQRTEKDnivhqyeqlikerekvqqdqrpimeefeklrq 839 
                  6677777666555444333444411334444444444555555442566677777777776666666666666666666666666666666666666 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO70857.1  840 qiaqhsdkrstisdrlsaavtermkadnsikhfsakaeaereklaaaediaktleeefqawsakasqycapypnprkaevvkrnleavdaalkerer 936 
                  6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                  ..............................................................................CS-HHHHHHHHHHHHHHHH CS
                  ..............................................................................xxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ..............................................................................lLSgGektLvalaLlfAiq 154 
                                                                                                    G+  L a+      +
  CDO70857.1  937 rqgatieeiadelhkkevalntakmelralnslnralrksvkirlarwhefrrhialrckvyfqyhlsnrgyfgkvlfDHVQGKLDLRACDCQ---R 1030
                  666666666666666666666666666666666666666666666666666666666666666666666666666554334555555555544...5 PP

                  CCS--SEEEECTTTTTS-HHHHHHHHHHHH...HHCTTSEEEEE-SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
       SMC_N  155 kvkpaplyllDeidaaLDeknvkkvaellk...eksknaQfivislr 198 
                  +v+ ++    De+d  +D+ n+++  +++    ++sk  Q+i i+ +
  CDO70857.1 1031 HVEISAHHTPDEFDVFMDAVNRRISMKMMIdtaNASKGKQYILITPQ 1077
                  55566666679999999999988877765424456677898888865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5        10   1.8e+04      60      84 ..      48      79 ..      25      92 .. 0.41
   2 !   44.4  29.5   1.4e-14   2.6e-11       1     188 [.     104     327 ..     104     527 .. 0.76
   3 ?   -8.9  27.7        10   1.8e+04      90     196 ..     745     845 ..     684     968 .. 0.58

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 10
      AAA_23 60 ksdveiesegkvkayvelt........fenkdg 84
                ++ +eie++ +++a ++++        fe +++
  CDO70857.1 48 NETIEIEDD-EDEAGASVEpdadeeakFEAENE 79
                333333333.11111111111222222333333 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 1.4e-14
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry......trsiere 93 
                 +++++ f++++  ++ +++ ++ I+G+NG+GK+++l A++ aL+g+++ ++r+sg    ks ++   eg+  + v++ ++n++++        rsi  +
  CDO70857.1 104 SIEMHQFMCHKYLTFSLGPQINFIIGHNGSGKSAVLSALTVALGGKATSTGRGSG---LKSFIR---EGQAVSEVTVVLKNQGEEAyrpkeyGRSIVIT 196
                 68999*****************************************998888776...334444...45666668888888877778888886666666 PP

      AAA_23  94 relskkkgkttkkaklelleideleqfise..............llgskkiilnlilflgqerfeefelkdkkerl.eelekeleeledekkllekl.. 175
                 r  +k+ ++++k + +++  i++++++++               +l+++ ++  l++  ++++ + f++ +++++l ee+++++e +++++k l+++  
  CDO70857.1 197 RRFTKEGASSYKIKSRDGKVISTKREELQAicdhmniqvdnpmnILTQDSARQFLSASTPADKYKFFLKGTQLSQLsEEYQTCMENISQTAKVLKRKae 295
                 666666666665555554444444444444222242222223323333333444444445555556666555554425577777777777777777777 PP

      AAA_23 176 ...................eqekekekeleel 188
                                    e++ e++++  el
  CDO70857.1 296 vipdledaleeararweeaEKAREQKNKSAEL 327
                 77766666555555554443333333322222 PP

  == domain 3  score: -8.9 bits;  conditional E-value: 10
      AAA_23  90 iererelskkkg.kttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekl....eqekekek 183
                 ++ + ++s++ + +  +++ + + +i++l+ +++++    +                   +d +  +++l+++l+e+ +ek+ + ++    +   ++++
  CDO70857.1 745 VKATYSRSQSTTsELMRQEREVNAKIRQLKTQVNNIQLELN-------------------EDLPVNIQALQEALNEQRTEKDNIVHQyeqlI---KERE 821
                 11111111111101112222223333333333333333333...................33333444444444444444443333332111...1111 PP

      AAA_23 184 ...........eleeleeeleeil 196
                            e+e+l++++ +  
  CDO70857.1 822 kvqqdqrpimeEFEKLRQQIAQHS 845
                 122334444445555555555433 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   7.2e-07    0.0013      17      49 ..     116     149 ..     102     153 .. 0.75
   2 ?   -1.8   0.0       1.5   2.8e+03       3      15 ..     978     990 ..     977     994 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.2e-07
      AAA_29  17 ieidlkg.atlltGpsGsGKSTllDAiqalLvpa 49 
                 ++++l   + +++G++GsGKS++l A+++ L ++
  CDO70857.1 116 LTFSLGPqINFIIGHNGSGKSAVLSALTVALGGK 149
                 4555444579*****************9998765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
      AAA_29   3 rlqlvNWgtfdgh 15 
                 +++l+ W++f++h
  CDO70857.1 978 KIRLARWHEFRRH 990
                 68999*****998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   6.2e-07    0.0011       1      39 [.     124     153 ..     124     185 .. 0.74
   2 ?   -1.4   0.2      0.87   1.6e+03     149     212 ..     721     783 ..     702     827 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.2e-07
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsgg 39 
                 +n++iG NgsGKS +L al ++ +          +++++
  CDO70857.1 124 INFIIGHNGSGKSAVLSALTVALG---------GKATST 153
                 79*****************98843.........333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.87
      AAA_21 149 srawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasv 212
                 +r w+++ + +++r+  ++ ++i+   +++++ +  +++l+r+ ++v+++++ l+ ++++i ++
  CDO70857.1 721 RRRWQAERDEYNSRL-FSLGQRIAEVKATYSRSQSTTSELMRQEREVNAKIRQLKTQVNNIQLE 783
                 567777777777777.888888999999999999999999999999999999998888776654 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  11.9      0.18   3.2e+02       9      97 ..     281     371 ..     275     379 .. 0.80
   2 ?    1.5   3.6      0.19   3.4e+02      35     100 ..     381     443 ..     372     450 .. 0.64
   3 ?    1.7   6.0      0.17     3e+02      36      75 ..     453     489 ..     449     535 .. 0.52
   4 !   17.0   1.9   2.9e-06    0.0051      33      99 ..     716     786 ..     711     790 .. 0.94
   5 ?    2.9  14.0     0.071   1.3e+02      10      97 ..     791     883 ..     786     913 .. 0.76
   6 ?    2.6   2.4     0.087   1.6e+02       8      59 ..     921     977 ..     917     985 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.18
                   H-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT..S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   9 enpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkk..edaeeliaevkelkeelkaleaelkeleael 97 
                   en+ ++++ lk++ e   d+++ le  ++r e   ++ e ++++ el +e + a  +   e+ ++ ++ev+ +  ++++ ea+ +++eae 
    CDO70857.1 281 ENISQTAKVLKRKAEVIPDLEDALEEARARWEEAEKAREQKNKSAELKRELAWAHVASkeEELTKQLNEVAHIRHRVQKCEAQIADAEAER 371
                   7999999999999888888877777666666666666666777888888988777665679999********************9999985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
                   HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  35 dekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                    e+   +   +e+l ++r el+  I+  k k    ++l+a+ k++ +    ++ + +ele+++ + 
    CDO70857.1 381 LEEELDALGNVENLTRRREELGVLIKANKTKL---SQLRADEKSILDSKTGVDSTIAELEKKIADE 443
                   455556667899999*******9999999865...5555555555555555555555555554443 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.17
                   HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCC CS
  Seryl_tRNA_N  36 ekrrelqveleelqaerNelskeIgkakkkkedaeeliae 75 
                   ekr ++ ++l++l+a   e  ++     ++    ++l ae
    CDO70857.1 453 EKRDRATAQLQQLNAALAENEEKLRHVAAER---QRLTAE 489
                   4444444555555555444444444444432...333333 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 2.9e-06
                   HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  33 eldekrrelqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaelek 99 
                    +d++rr++q+e +e +++  +l++ I++ k+        ++el+ + +e+++++ +l++++++++ el++
    CDO70857.1 716 NADTERRRWQAERDEYNSRLFSLGQRIAEVKATYsrsqSTTSELMRQEREVNAKIRQLKTQVNNIQLELNE 786
                   579****************************9888888999************************999986 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.071
                   -HHHHHHHHCCCT.CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT........S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  10 npeavkeklkkRg.edkadvdelleldekrrelqveleelqaerNelskeIgkakkkk........edaeeliaevkelkeelkaleaelkeleael 97 
                   n++a++e+l++ + e ++ v ++ +l ++r+++q++   + +e  +l ++I++ ++k         +     + e  +  + +k+ +a+ ++ +++l
    CDO70857.1 791 NIQALQEALNEQRtEKDNIVHQYEQLIKEREKVQQDQRPIMEEFEKLRQQIAQHSDKRstisdrlsA----AVTERMKADNSIKHFSAKAEAEREKL 883
                   8999999998766699999***********************************9999888855552....33333333333333333333333332 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.087
                   HH-HHHHHHHHCCCT.....CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Seryl_tRNA_N   8 renpeavkeklkkRg.....edkadvdelleldekrrelqveleelqaerNelskeI 59 
                     n+eav+++lk+R+       ++  del + + +  +++ el +l++   +l k++
    CDO70857.1 921 KRNLEAVDAALKERErrqgaTIEEIADELHKKEVALNTAKMELRALNSLNRALRKSV 977
                   569999999999998744434444455555555555555556666666666555555 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3      0.12   2.2e+02     134     176 ..     258     301 ..     217     307 .. 0.79
   2 ?  -10.8  25.0        10   1.8e+04      86     147 ..     309     381 ..     262     463 .. 0.50
   3 !   16.3   8.7   4.4e-06    0.0079      66     162 ..     451     547 ..     439     549 .. 0.89
   4 ?    3.0   4.0     0.053        94     127     186 ..     725     784 ..     696     788 .. 0.78
   5 ?   -6.7  23.4        10   1.8e+04      92     167 ..     757     833 ..     741     908 .. 0.55
   6 ?    2.6   0.8     0.072   1.3e+02      67     128 ..     921     979 ..     897     992 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
     UPF0242 134 eelklele.eqLaekqellqeyqetieeqrsvlekrqdqieqLe 176
                 +++k +l+  qL +  e  q+  e+i++  +vl+++ + i +Le
  CDO70857.1 258 DKYKFFLKgTQLSQLSEEYQTCMENISQTAKVLKRKAEVIPDLE 301
                 55666665358999999999999*****************9998 PP

  == domain 2  score: -10.8 bits;  conditional E-value: 10
     UPF0242  86 tkeealeelqeeeeeLkee...........ldakeeelerlkeenqqLqekleaiae...dfeelkleleeqLaek 147
                    e+ e+++e++++               +++keeel +  +e ++++ + ++  +   d e+ +l+ +e++a  
  CDO70857.1 309 ARWEEAEKAREQKNK---SaelkrelawahVASKEEELTKQLNEVAHIRHRVQKCEAqiaDAEAERLACNEKVALL 381
                 222222222222222...0222333555556666666666666666666666655553332222333333333322 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 4.4e-06
     UPF0242  66 ekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqr 162
                  k+k +   a+l++l+  l+++ee+l+ + +e ++L  e da ++el rl++e++ L+ +  +  e++ +     +++La+  ++++   ++i++ r
  CDO70857.1 451 SKEKRDRATAQLQQLNAALAENEEKLRHVAAERQRLTAEADAAKTELGRLEQEQKGLRDRVVDCDEQIRRCAELEKNTLAQYGNKMDWVLAEIKKRR 547
                 56667777888999999****************************************************************9999998888888766 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.053
     UPF0242 127 eaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLeskVrDlnyEi 186
                 +a   +++  +  l +++ae +   + +q t++e+     + +++i qL ++V+ ++ E+
  CDO70857.1 725 QAERDEYNSRLFSLGQRIAEVKATYSRSQSTTSELMRQEREVNAKIRQLKTQVNNIQLEL 784
                 333346666667789999999999999999999999999999999*******99999987 PP

  == domain 5  score: -6.7 bits;  conditional E-value: 10
     UPF0242  92 eelqeeeeeLkeeldakeeelerlkee.nqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlek 167
                  el  +e+e + ++ + ++++++ + e n+ L +  +a +e  +e++ e ++ +++ ++l++e ++  ++qr  +e+
  CDO70857.1 757 SELMRQEREVNAKIRQLKTQVNNIQLElNEDLPVNIQALQEALNEQRTEKDNIVHQYEQLIKEREKVQQDQRPIMEE 833
                 23333333333333333333333332223344444444444444444444444444444444444444444433332 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.072
     UPF0242  67 kskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqeklea 128
                 k +le+  a l+e +   + +  ++ee  +e ++ +  l+  + el+ l+  n  L++  + 
  CDO70857.1 921 KRNLEAVDAALKERE---RRQGATIEEIADELHKKEVALNTAKMELRALNSLNRALRKSVKI 979
                 344444444444444...66667****************************99999976554 PP

>> DUF3145  Protein of unknown function (DUF3145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2     4e-05     0.071      30     104 ..     316     392 ..     291     429 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4e-05
     DUF3145  30 kWtaqpaapgslraelsWegevgtaarlasaLraweelrfevtedps..egvdgeRysvtPelGlfsaatsanGdvv 104
                 k  +q+ ++++l+ el+W   + +  +l+++L++++++r+ v +  +  + +++eR ++  ++ l + +++a G+v 
  CDO70857.1 316 KAREQKNKSAELKRELAWAHVASKEEELTKQLNEVAHIRHRVQKCEAqiADAEAERLACNEKVALLEEELDALGNVE 392
                 446899999********************************97655501566789*******************985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.3e-05      0.11      13      33 ..     124     144 ..     115     246 .. 0.89
   2 ?   -4.2   4.1        10   1.8e+04      43      43 ..     379     379 ..     264     513 .. 0.61
   3 ?   -4.1   6.0        10   1.8e+04      38      80 ..     819     871 ..     753     968 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.3e-05
                 EEEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllag 33 
                 +  i+G+nG+GKS +l++l+ 
  CDO70857.1 124 INFIIGHNGSGKSAVLSALTV 144
                 5679*************9975 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 10
                 E CS
                 x RF
    ABC_tran  43 l 43 
                  
  CDO70857.1 379 A 379
                 1 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 10
                 SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx................x RF
    ABC_tran  38 teGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren................e 80 
                 + ++++ d++++ e e e+lr++i+  + + ++      + ++                +
  CDO70857.1 819 EREKVQQDQRPIME-EFEKLRQQIAQHSDKrST------ISDRlsaavtermkadnsikH 871
                 22333333333333.333333333322222222......222233333334544444441 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9  16.8   4.3e-06    0.0076     142     299 ..     274     433 ..     267     434 .. 0.87
   2 ?   10.3  10.9    0.0002      0.37     200     284 ..     404     489 ..     397     493 .. 0.89
   3 ?   -6.5  35.4        10   1.8e+04      68     282 ..     719     967 ..     701     982 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.3e-06
                 XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 142 eEvkelqkqvs.eqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqk 239
                 eE ++  +++s +  ++  +a+  +dL+ +l+e ra +ee aek re+ ++  + k e +  ++++++e+l +  +e++ +r+++q+ e+++++ ++++
  CDO70857.1 274 EEYQTCMENISqTAKVLKRKAEVIPDLEDALEEARARWEE-AEKAREQKNKSAELKRELAWAHVASKEEELTKQLNEVAHIRHRVQKCEAQIADAEAER 371
                 6666767777745566677788889*************98.79999***************************************************** PP

                 HHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 240 asleaqlaeleerlea..eleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEI 299
                  + ++++a lee+l+a  ++e+l +  +el   ++  + ++ +   + +++Ld K+  d  I
  CDO70857.1 372 LACNEKVALLEEELDAlgNVENLTRRREELGVLIKANKTKLSQLRADEKSILDSKTGVDSTI 433
                 ******99999988743378888888888889999999999999999999999999988777 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 200 lqeaaeknsealrsakeeitelrrqiqsleieles.lkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlre 284
                 l +a +++ ++lr+ ++ i +++  ++s  +ele+ +  ++a le++ +e  +r  a+l++l+++l+e+ee+l+++ +e +r   e
  CDO70857.1 404 LIKANKTKLSQLRADEKSILDSKTGVDSTIAELEKkIADEQARLETRSKEKRDRATAQLQQLNAALAENEEKLRHVAAERQRLTAE 489
                 556677888999*********************8626788899**********************************999998766 PP

  == domain 3  score: -6.5 bits;  conditional E-value: 10
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  68 kerarlqleldnlreeledlrkkyeke..............lnkreevEaelkalrkdldeatla.rvdLekkvesLkeelaflkkvheeEvkelqkqv 151
                 +er r q+e+d+ +  l  l +++++               +++ +ev+a++++l+ ++++ +l+   dL   +++L+e l+ +++  ++ v++ ++ +
  CDO70857.1 719 TERRRWQAERDEYNSRLFSLGQRIAEVkatysrsqsttselMRQEREVNAKIRQLKTQVNNIQLElNEDLPVNIQALQEALNEQRTEKDNIVHQYEQLI 817
                 556666666666655555555555544555555677777778888888888888888888888873568888888888888888888888888888888 PP

                 XXXXXXXXXXXXXXX......................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHH CS
    Filament 152 seqvlvevdaarkld......................Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsl 228
                 +e+ +v+ d+ + ++                      L++++ e r + ++ ++         +++k e  +e+ +  ++ +++ +ee +    +  + 
  CDO70857.1 818 KEREKVQQDQRPIMEefeklrqqiaqhsdkrstisdrLSAAVTE-RMKADNSIK--------HFSAKAEAEREKLAAAEDIAKTLEEEFQAWSAKASQY 907
                 88888888888888766663333333333333333334444444.333344444........4555555555555555555555555555555554444 PP

                 HH......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 229 ei......eleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarql 282
                  +      + e +k + +++ a+l+e e r  a +e++ ++l+++e +l++++ e+ + +
  CDO70857.1 908 CApypnprKAEVVKRNLEAVDAALKERERRQGATIEEIADELHKKEVALNTAKMELRALN 967
                 331111114566888899999********************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2478  (0.138212); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                       158  (0.00881254); expected 17.9 (0.001)
Passed Fwd filter:                        92  (0.00513135); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 2.18u 0.39s 00:00:02.57 Elapsed: 00:00:00.65
# Mc/sec: 5158.87
//
Query:       CDO70858.1  [L=538]
Description: hypothetical protein BN946_scf184801.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.6e-262  870.2   0.3   5.2e-262  870.0   0.3    1.0  1  ICL         Isocitrate lyase family
    3.2e-09   36.6   0.0    6.6e-09   35.6   0.0    1.5  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  870.0   0.3  5.9e-266  5.2e-262       1     526 []      11     534 ..      11     534 .. 0.97

  Alignments for each domain:
  == domain 1  score: 870.0 bits;  conditional E-value: 5.9e-266
                 HHHXHHHHHTSGGGGG---SS-HHHHHHH--SS----THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH-S-EEE-HHHHHHH--TT---- CS
         ICL   1 evaevkkwwsdsrwrktkrvysaedivskrGnlkieyasseqakklfklleeheaektasktfGaldpvqvtqmakyldtiyvsGwqssstastsneps 99 
                 eva+v++ww+d r+ ktkr+y+a ++vskrG+l i+y+s++qakkl+++l e+++++t s+t+Galdpvqvtqmakyl+t+yvsGwqssstas++nep+
  CDO70858.1  11 EVAQVEQWWKDRRFAKTKRPYTAAQVVSKRGTLPISYPSDVQAKKLWRILSERFKNGTPSHTYGALDPVQVTQMAKYLETVYVSGWQSSSTASSTNEPG 109
                 79************************************************************************************************* PP

                 SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT--------- CS
         ICL 100 pdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaG 198
                 pdladyp +tvpnkvehlf+aqlfhdrkq+e+r++++++e ++++ +dylrpi+adadtGhGGlta++kl+k+f+e+GaaGihiedqa+gtkkcGhmaG
  CDO70858.1 110 PDLADYPSNTVPNKVEHLFMAQLFHDRKQREARSRLSEKELAETPAIDYLRPIVADADTGHGGLTATMKLAKMFVEKGAAGIHIEDQAPGTKKCGHMAG 208
                 *************************************************************************************************** PP

                 EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE--TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHH CS
         ICL 199 kvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGatnpdleeladllveaeaeGksGaelqaiedewlkkaglklfee 297
                 kvlvpiqehinrlvair+q+di+g++ lv+artdseaatlit+++d+rdh filG+tn +l++l+  l+eae++Gk+G++l+a+e++w++ a+++lf+ 
  CDO70858.1 209 KVLVPIQEHINRLVAIRLQFDIMGVNNLVIARTDSEAATLITTNVDERDHPFILGSTNSKLRPLVVELNEAEKAGKTGEALEAVEEQWMAAANIQLFST 307
                 *************************************************************************************************** PP

                 HHHHHHHTSS-S-HHHHHHHHHHHHTT--HH...HHHHHHHH.HHSS--.--BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHH CS
         ICL 298 avvdeieksklsnkkelikkftkkvkplselsnkearklake.llgkdi.ffdwelprvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqa 394
                 ++ ++++++  s   + +++ft++v    ++s   a ++a++ +  k++ f+dw++pr+reG+yry+Ggtqc+++ra+afapy+dl+wme+k p ++qa
  CDO70858.1 308 TLGNALHAQGASP--QTVQRFTERVA---HVSYPTAVEIARKeFGLKQVpFWDWDAPRTREGFYRYQGGTQCAINRAIAFAPYSDLLWMETKKPILTQA 401
                 ******9998775..6799****998...6677788899976155566669************************************************ PP

                 HHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHH.HHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHT-GGGSHH CS
         ICL 395 kefaeGvkakvpeqklaynlspsfnwkkamsade.qetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqeeeidnGvdvvkhq 492
                 +efaeGv+a++peq+laynlspsfnw++a+ +++ ++ y+  l+klG+vwqfitlaGlh+na isd fa+++a +Gmkay+e +q++e++ G+dv++hq
  CDO70858.1 402 REFAEGVHAVYPEQWLAYNLSPSFNWEAAGLNENdMKAYVWELGKLGFVWQFITLAGLHSNAYISDLFARAFATEGMKAYVELIQRREREIGCDVLTHQ 500
                 ****************************9876544**************************************************************** PP

                 HHHTHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 493 kwsGaeyidellklvtGGvsstaamGkGvtedqf 526
                 kwsGa+y+d+l+k+vtGGvsstaamGkGvtedqf
  CDO70858.1 501 KWSGADYMDNLMKTVTGGVSSTAAMGKGVTEDQF 534
                 *********************************9 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   7.4e-13   6.6e-09      35     146 ..      98     243 ..      82     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 7.4e-13
  PEP_mutase  35 tsSlavaaslGvpDgeelpleellaavraiaevvs...........................lPlivDledGygespeevaetvrrliaaGvvgvniED 106
                 +sS a ++    pD  + p +++ + v++++ ++                             P+ +D+++G+g       +  + +++ G++g++iED
  CDO70858.1  98 SSSTASSTNEPGPDLADYPSNTVPNKVEHLFMAQLfhdrkqrearsrlsekelaetpaidylRPIVADADTGHGG-LTATMKLAKMFVEKGAAGIHIED 195
                 555555555555555555555555555555555444555555555566666666666666668**********99.8888899**************** PP

  PEP_mutase 107 k.....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtda 146
                 +     k++  a++ l++i+e+ +++ a+r + +  g   +++ARtd+
  CDO70858.1 196 QapgtkKCGHmAGKVLVPIQEHINRLVAIRLQFDIMGvnNLVIARTDS 243
                 *9987544455888899******************99999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3470.78
//
Query:       CDO70859.1  [L=271]
Description: hypothetical protein BN946_scf184801.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-18   66.9   1.9    3.5e-18   66.1   1.9    1.4  1  Glycos_transf_4  Glycosyl transferase family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   1.9     2e-22   3.5e-18      11     103 ..       2     100 ..       1     135 [. 0.87

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 2e-22
  Glycos_transf_4  11 illlGflDDvlglkarlKlilqilaalililtld........lslttlglllt.....qvlielglilavlltllvivgvtNavNliDGldGla 91 
                      +++lGflDDv+++++r+Kl + i+a+++l+++++        +      ++l       +li+lg++++v+++ll  +++ N++N+++G++G +
       CDO70859.1   2 ATMLGFLDDVFDIRWRHKLPIPIIASIPLLIVYYsergatdvV------VPLPlrwllGTLINLGPLYYVYMSLLSTFCT-NSINILAGINGSE 88 
                      679****************************999674433331......33335555568********************.************* PP

  Glycos_transf_4  92 agvsiiialalv 103
                      ++++++ial+++
       CDO70859.1  89 VSQAVVIALSII 100
                      *******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1975.40
//
Query:       CDO70860.1  [L=298]
Description: hypothetical protein BN946_scf184801.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.1e-100  335.0   0.0   3.5e-100  334.8   0.0    1.0  1  F-actin_cap_A  F-actin capping protein alpha subunit
  ------ inclusion threshold ------
      0.092   13.0   0.4       0.16   12.2   0.4    1.3  1  PBP_N          Penicillin-binding protein N-terminus


Domain annotation for each model (and alignments):
>> F-actin_cap_A  F-actin capping protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.8   0.0  3.9e-104  3.5e-100       1     265 [.      10     288 ..      10     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 334.8 bits;  conditional E-value: 3.9e-104
                    HHHHHHT--TT-HHHHHHHHHCC-S-CCCCTTTHHHHHHHHHHHHT-EEEETTE..EEE--STTEE...........ETTEEEEGGGTEEEEEETT CS
  F-actin_cap_A   1 asslllqsPpgelneVlkDlrallsddskleealaealeeyneeqlvtvelpgssekvliseankl...........geeryvdpkskksfkfdhl 85 
                    as++llqsPpge+n+Vl+D+r+++sdd++l++++ +al+eyn  q++t+++pg+++++++sea+++           +e+ry+dp+s++sf+fdhl
     CDO70860.1  10 ASKFLLQSPPGEINDVLNDVRNIISDDESLQAGVLPALREYNLAQFITADVPGHQHQSIVSEAARIpsgsaekedeqSEDRYWDPRSRTSFRFDHL 105
                    689***************************************************************9999998887777***************** PP

                    TTEEEEEEE--S-GGGHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEEEEEEEGGGTEEEEEEEEEEEESSEEEEEEEEEEEEEE- CS
  F-actin_cap_A  86 kqkasdvesveleseleelrkalekalekYvkehYpsgvasvypkeeeeekelaiiivgnkynpsnFwnGrwrseytvdsssktleGkikvqvHYy 181
                    + ++sd e+ve++ e+e +r+ale+a  +Y+++hY++gv+sv+++  + ++ ++i+iv+nkynpsnFw+Grwrsey+vd+++k+l+Gki ++vHYy
     CDO70860.1 106 SLETSDPEHVEPDPESEPFRAALETASLTYLSSHYHDGVVSVFSTPGSASR-YIIQIVANKYNPSNFWSGRWRSEYIVDTEAKQLTGKILLNVHYY 200
                    *******************************************97666666.******************************************** PP

                    SSEEEEEEEEEEEEEEEE--....SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-SS-TTSS---CCHHTXXXXXXXX CS
  F-actin_cap_A 182 EdGNVqlktskevseslsvs....seessakeivklikeaenkyqeeLnesyeeLsekafkaLRRqLPvtrqkidWdkvlnyklgqdl 265
                    E+GNVql+t+++vs +l+ +       s+a+++++li+++e kyq++Ln++y e+ ek+fk+LRR+LP+tr+k+dWd+vl+yklg++l
     CDO70860.1 201 EQGNVQLSTTHNVSLTLPPAittsGGASAASKVLALIETEEGKYQSSLNDTYAEMGEKTFKGLRRALPMTRSKLDWDRVLGYKLGAEL 288
                    ****************9966655577889********************************************************998 PP

>> PBP_N  Penicillin-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   1.8e-05      0.16      22      74 ..      76     132 ..      59     141 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
       PBP_N  22 kpgpasesdsvsqd.pwapqgpdpfrlssda...atpepprepepe.epfradlkhaa 74 
                   g a + d  s+d  w p++   fr+   +   + pe   ep+pe epfra l  a+
  CDO70860.1  76 PSGSAEKEDEQSEDrYWDPRSRTSFRFDHLSletSDPE-HVEPDPEsEPFRAALETAS 132
                 345666677777663699*******9765441003333.357888769*****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2066.65
//
Query:       CDO70861.1  [L=419]
Description: hypothetical protein BN946_scf184801.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-49  166.7   0.0    7.8e-49  166.4   0.0    1.1  1  AMP-binding      AMP-binding enzyme
     0.0017   19.3   0.8      0.004   18.1   0.8    1.7  1  AMP-binding_C    AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.35   11.3   0.1    1.6  1  Eno-Rase_FAD_bd  Enoyl reductase FAD binding domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0   1.3e-52   7.8e-49     196     422 ..      11     271 ..       1     272 [. 0.82

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 1.3e-52
                  CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHH............HHCCCHHCHHHHC. CS
  AMP-binding 196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleal............lesgalkaakkak. 280
                   f l+ed + l++lpl hi++  + +l++++ G +++++ +d+     ++le+++ lk++ ia+vPrvl++l            l           k 
   CDO70861.1  11 GFVLQEDRTALAFLPLGHIYER-IMELCSVATGKRIGYACGDPL----RFLEDVQLLKPHWIALVPRVLNRLyqaitaagnapgL-----------Kg 92 
                  3567778899***********6.9**************999977....469*********************7776543333331...........02 PP

                  ...................................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE CS
  AMP-binding 281 ...................................dlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkp 342
                                                      l++ l ++ +g + ls+++++ff+  +   + egYG+TE++g++t +  ++d ++ g+vG  
   CDO70861.1  93 alfrravavklhnlrtngrmthalwdrlvfkkvsaVLGGrLAVLGSGSALLSANTVEFFKIALLADLREGYGMTENAGICT-MSWPDDPSSGGTVGGL 189
                  2233334443445555555555555555555555555555666779*****************99***************9.66688889******** PP

                  -TTEEEEEE-TTTSCBEETTSE...EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 343 lpgvevkivDeetgepvpdgee...GellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +p vevk+vD  ++++ + +++   Gel++rg+  + gY+k+p++t+e++d e++wl+TGD++++d+ G+++i++R k+++kl
   CDO70861.1 190 MPSVEVKLVDVPELGYRASDKPfprGELYMRGAPRFVGYYKDPAKTKETID-EEGWLHTGDVATIDDHGRFKIIDRVKNIMKL 271
                  *****************99999999*************************9.657***********99**************8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.8   6.7e-07     0.004       2      52 ..     282     326 ..     281     360 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.7e-07
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk 52 
                    +E++++ +p Va+ +++G+  +   ++lv++Vv+++ +   +++L+ +v+ 
     CDO70861.1 282 IENVYMVSPLVAQLFIHGDGLK---SYLVGVVVPDPVQ---AAALVNRVTG 326
                    9*********************...*********4324...3666666633 PP

>> Eno-Rase_FAD_bd  Enoyl reductase FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.9e-05      0.35      19      56 ..     344     382 ..     333     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
                      HHHHHHHHHTT.-TTTHHHHS-HHHHHHHHHHHTT-S-T CS
  Eno-Rase_FAD_bd  19 Qaevkelwekv.ttenlkeltDlegykeeFlklfGFevd 56 
                      Q+ v++ + ++ ++en+++l  +e+ k+  l l+GF v+
       CDO70861.1 344 QRVVDAALAELeKEENVQKLKGFEKIKRLHLTLNGFTVE 382
                      788888888874789*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3128.14
//
Query:       CDO70862.1  [L=284]
Description: hypothetical protein BN946_scf184801.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-06   24.8   0.0      1e-05   24.4   0.0    1.2  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.6e-10     1e-05      20     134 ..     117     234 ..     103     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.6e-10
                  TEEEEHHHHHHHHHHHHHH.....HH.HTTSSTT-EEEEEESSSH......HHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCC CS
  AMP-binding  20 gqtlTYreldervnrlAag.....Lr.slGvkkgdrVaillpnsp......ewvvallailkaGavvvplnptltaeelayiledseakvliatvdse 105
                  + + ++ e+ +r ++++++     L  +lG ++ d+V+i+++n+p      +w++++la++ +G v vpl++tl+a+ +++ +  + ++ +       
   CDO70862.1 117 YVWQSWPEVAARRSAIGSAvhrmfLDgQLGGRDMDTVGIWSKNCPsegncaDWLIVDLALQAYGKVSVPLYDTLGADSVEMTVIFAAPEHIP--F--- 209
                  5667777777777777764222227778999**********98653333338****************************999988888876..1... PP

                  CHHHHHHHHSCC-EECEEEEESCCS-HCC CS
  AMP-binding 106 lleklleaaakleavklvivldadellke 134
                      ll +a+kl++ k ++ l+a + +++
   CDO70862.1 210 ----LLTIAPKLKTLKMIVSLEALSDEEK 234
                  ....3333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2165.74
//
Query:       CDO70863.1  [L=558]
Description: hypothetical protein BN946_scf184801.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-09   39.0   0.0    2.7e-08   34.4   0.0    2.4  1  SET              SET domain
    8.8e-06   25.5   0.3    7.5e-05   22.6   0.3    2.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    0.00051   20.5   0.1     0.0012   19.3   0.1    1.6  1  TilS             TilS substrate binding domain
     0.0011   18.7   0.0     0.0019   18.0   0.0    1.3  1  MafB19-deam      MafB19-like deaminase
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.21   11.2   0.0    1.2  1  DUF2145          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   7.6e-12   2.7e-08       1     169 []      37     134 ..      37     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 7.6e-12
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlna 95 
                 GrGv+A ++Ip+ ++i e+ + ++++ +e++++++     +y f++                                                     
  CDO70863.1  37 GRGVYACREIPAQTLI-EVSPVLLFSATEYEEHGCHtvldHYTFKWR---------------------------------------------------- 82 
                 9***************.9******************99999999999.................................................... PP

                 XXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  96 skpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                                +   al+ g g     +++NHs +pN++++++       + +++tr++  +eEl+i Yg
  CDO70863.1  83 ---------------DGRMALALGLG-----SLFNHSQRPNVSYSFDM--ATESIRYTTTRKVMRDEELCIFYG 134
                 ...............44445555555.....6**********888888..9**********************8 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.3   2.1e-08   7.5e-05      70     100 ..     464     504 ..     332     505 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.1e-08
                      E..........TTEEEEEEE--BHHHHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  70 l..........egatlyvtlePCsmCakaiiqsgikkvvvg 100
                                 +   l++t+ePC mC++a+ +s++k+v+++
       CDO70863.1 464 SdarngahyllTSLSLFMTHEPCVMCSMALLHSRVKEVFYL 504
                      044444444447778999********************985 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   3.4e-07    0.0012       9      41 ..     228     259 ..     225     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.4e-07
                 S-HHHHHHHHHHHHHHTTTT--HHHHHHH.HHH CS
        TilS   9 LsparqrrlLRrWLaqlglpmpsaahLeellrq 41 
                 L+ +r++++  rWL+q+g+  ps ahL + +r+
  CDO70863.1 228 LPNPRAAAVMLRWLKQSGFDTPSMAHLKR-IRK 259
                 99**************************9.443 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.2e-07    0.0019      68     106 ..     472     510 ..     463     544 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.2e-07
  MafB19-deam  68 krlddatlyvtlepCdmCagaivqaglkklvygagnpks 106
                    l  + l+ t+epC mC  a+  +++k++ y    +k+
   CDO70863.1 472 YLLTSLSLFMTHEPCVMCSMALLHSRVKEVFYLFPMEKT 510
                  56778899**********************997765555 PP

>> DUF2145  Uncharacterized protein conserved in bacteria (DUF2145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     6e-05      0.21     142     188 ..     237     284 ..     217     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
     DUF2145 142 aqawlklkgye.pttlkigllkrllarlfaanvaldDhpaekrfagki 188
                 + +wlk++g++ p++ +++ ++++  r+ +a + ++Dhp+   ++++ 
  CDO70863.1 237 MLRWLKQSGFDtPSMAHLKRIRKIDNRMSMALILTRDHPQPPVIPDNT 284
                 458*******5499*************************988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 4553.60
//
Query:       CDO70864.1  [L=1705]
Description: hypothetical protein BN946_scf184801.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-13   49.9   0.0    3.7e-06   26.9   0.0    2.5  2  PLDc_2    PLD-like domain
    1.6e-10   40.7   1.2     0.0002   21.4   0.1    2.5  2  PLDc      Phospholipase D Active site motif
    3.4e-09   36.7   0.6    1.3e-07   31.6   0.0    3.2  3  PX        PX domain
  ------ inclusion threshold ------
      0.054   14.0   0.2        0.3   11.6   0.0    2.2  2  PH        PH domain


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.2e-08   0.00037      21      98 ..     842     926 ..     814     929 .. 0.73
   2 !   26.9   0.0   8.3e-10   3.7e-06      56     120 ..    1187    1247 ..    1078    1252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.2e-08
      PLDc_2  21 sdreildallk.aakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe.t......llgslHaKlylidgktvivGS 98 
                  dr+ ld+ll+ +ak+gvk+ i+l ++ ++ +++++ + ++ +  +l+ ++ v+ +  +           H+Kl++id++++++G+
  CDO70864.1 842 KDRYRLDKLLEkKAKEGVKIYIILYQEVSNRTTPTDSNYAKQRLTALHPNIMVQRSPsHfqtgtfY-WAHHEKLCVIDQTIAFMGG 926
                 566668888777**************8887777666655555555566777766654424344431.577**************98 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 8.3e-10
      PLDc_2   56 aslkelkellleagvevrvfetllgslHaKlylidgktvivGSsNltkrgl..dlnlElnvviedke 120 
                   sl+++ +l  +++v   +  +    +H K++++d++ +i+GS+N+++r+   d++ E++ vi d +
  CDO70864.1 1187 FSLRNWGKL--RGEVLTTE--Q--VYIHGKVCIVDDRLAIIGSANINERSQrgDRDSEIAAVIRDTD 1247
                  444555555..33333222..2..568************************6666668999998876 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   6.6e-07    0.0029       3      28 .]     908     933 ..     907     933 .. 0.94
   2 !   21.4   0.1   4.5e-08    0.0002       6      28 .]    1208    1230 ..    1205    1230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.6e-07
                 BEE---EEEETTTEEEEE---SSHHH CS
        PLDc   3 gthHqKivivDdrvafvGgaNLcdgr 28 
                 + hH+K  ++D ++af Gg++ c gr
  CDO70864.1 908 WAHHEKLCVIDQTIAFMGGLDHCFGR 933
                 99*******************88876 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.5e-08
                  ---EEEETTTEEEEE---SSHHH CS
        PLDc    6 HqKivivDdrvafvGgaNLcdgr 28  
                  H K  ivDdr+a++G+aN++ ++
  CDO70864.1 1208 HGKVCIVDDRLAIIGSANINERS 1230
                  9*******************996 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.9e-11   1.3e-07       8     111 ..     384     499 ..     378     500 .. 0.80
   2 ?   -3.1   0.0       1.7   7.8e+03      43      65 ..     968     990 ..     965    1019 .. 0.84
   3 ?    1.6   0.0     0.061   2.7e+02      35      53 ..    1561    1579 ..    1542    1680 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.9e-11
                 EEEEEEETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHH..HHHHHT..TSTSTSSSTSGSSSSS........CTTSHHHHHHHHHHHHHHHHHH CS
          PX   8 vleretsgskkhsyylyevelktgakewtvkRrYsdFeeLhsk..Llrkfp..rvkiPplPkkvlfgsv........rkkdeefiekrrkgLeeyLqrl 94 
                 v+++     + + ++ +e+e+ +g  +w v+R+ ++F +Lh +  L + +     ++P++P  +l++ +        +    +f++ +r++Le yL  l
  CDO70864.1 384 VSDSLNPLHGNKAVFRIECEYANGTVRWVVYRQLREFLSLHGHytLSNAYNrnIETLPEFPLTSLPY-FkflkergtDVGRADFARLQREALETYLIGL 481
                 55555446788999**************************987334444445333456666666665.269**99*99999****************** PP

                 HTSCHHHH.SHHHHHHHH CS
          PX  95 lnhpelrn.sevlteFLe 111
                 ++  ++++ ++ l  FLe
  CDO70864.1 482 IRAVMFQPsVNRLAGFLE 499
                 ********9999999998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHTTSTSTSSST CS
          PX  43 dFeeLhskLlrkfprvkiPplPk 65 
                 dF+ L++  ++ ++r+kiP +P 
  CDO70864.1 968 DFHALNKPHEDMYDRSKIPRMPW 990
                 89999999999999999999995 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.061
                  EEEEEEHHHHHHHHHHHHH CS
          PX   35 wtvkRrYsdFeeLhskLlr 53  
                   t++++Y++F+  h++L +
  CDO70864.1 1561 VTTWKQYKEFIVHHERLNQ 1579
                  589*******988888865 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.51   2.3e+03      11      36 ..     536     560 ..     515     585 .. 0.74
   2 ?   11.6   0.0   6.7e-05       0.3      66     104 ..     743     777 ..     720     778 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.51
                 TSSSSCSEEEEEEEEETTEEEEESST CS
          PH  11 gsgkkkswkkrwfvLkdsellyyknd 36 
                  s++  + k+rw+ +++s ++  ++ 
  CDO70864.1 536 ASWRE-KKKQRWCAVRESYMVAMEEM 560
                 33444.7788******9998877765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.7e-05
                 STSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHHHH CS
          PH  66 rkfcfelriverngsrtyllqasseeerkeWikaiqsai 104
                  k++f ++ +    ++++ l+a++e  + +Wi+a++++ 
  CDO70864.1 743 SKHTFYIVNS----QTRLKLYAKNERQMLQWISAMERVA 777
                 4666777555....79******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.54
# Mc/sec: 9449.47
//
Query:       CDO70865.1  [L=2370]
Description: hypothetical protein BN946_scf184801.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-232  771.1   9.8   4.1e-232  770.1   9.3    1.8  2  PROCN           PROCN (NUC071) domain
   9.9e-128  424.5   0.4   2.5e-127  423.2   0.4    1.7  2  PRP8_domainIV   PRP8 domain IV core
    1.2e-87  291.9   2.3    1.2e-87  291.9   2.3    2.4  3  U6-snRNA_bdg    U6-snRNA interacting domain of PrP8
    2.5e-85  284.0   2.3    2.5e-85  284.0   2.3    2.8  3  PRO8NT          PRO8NT (NUC069), PrP8 N-terminal domain
      2e-73  244.8   0.1      4e-73  243.8   0.1    1.6  1  U5_2-snRNA_bdg  U5-snRNA binding site 2 of PrP8
    9.4e-47  157.3   0.5    2.2e-46  156.1   0.5    1.7  1  RRM_4           RNA recognition motif of the spliceosomal PrP
    3.3e-42  143.3   0.0    7.6e-42  142.1   0.0    1.7  1  PROCT           PROCT (NUC072) domain
     0.0092   15.9   0.0      0.021   14.8   0.0    1.6  1  JAB             JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
       0.11   12.5   0.2       0.42   10.6   0.2    2.0  1  Corona_5a       Coronavirus 5a protein


Domain annotation for each model (and alignments):
>> PROCN  PROCN (NUC071) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  770.1   9.3  2.1e-235  4.1e-232       2     407 .]     428     833 ..     427     833 .. 1.00
   2 ?   -2.5   0.0       0.8   1.6e+03     317     370 ..    1736    1783 ..    1714    1786 .. 0.82

  Alignments for each domain:
  == domain 1  score: 770.1 bits;  conditional E-value: 2.1e-235
       PROCN   2 ektkdalsllfapaPfnlrsgktkraedvplikkwykeraekeePvkvrvsyqkllkkyvlnelkkkkkkkkkkkkllkelketkffqktkldwveaGl 100
                 e t+da++l++ap P+++rsg+++ra+dvpl+k+wy e+++  +Pvkvrvsyqkllk+yvlnel+++++k+ +kk+l+++lk+tkffq+t+ldwveaGl
  CDO70865.1 428 ELTADAIALWWAPDPYKRRSGRMRRAQDVPLVKNWYLEHCPPGQPVKVRVSYQKLLKCYVLNELHTRPEKAMTKKNLFRQLKATKFFQTTRLDWVEAGL 526
                 6799*********************************************************************************************** PP

       PROCN 101 qvvrqgfnmlnllihrksltylhldynfnlkPtktlttkerkksrlGnafhlirellrlvkllvdahvqyrlgkidayqladglqyifnhvgqltGiyr 199
                 qv+rqg+nmlnllihrk+l+ylhldyn+nlkP+ktlttkerkksr+Gnafhl+re+lrl+kl+vda+vq+rlg++da+qlad+lqyif+hvg ltG+yr
  CDO70865.1 527 QVCRQGYNMLNLLIHRKNLNYLHLDYNMNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADALQYIFAHVGALTGMYR 625
                 *************************************************************************************************** PP

       PROCN 200 ykykvmrqirackdlkhviysrfntgevgkGPGvGfwaPswrvwvfflrGiiPllerwlgnllarqfeGrkskevaktitkqrveseydlelraavlhd 298
                 ykyk+mrq+r++kdlkh+iy+rfntg vgkGPG+GfwaP wrvw+ff+rGi+PllerwlgnllarqfeGr+sk +akt+tkqrves+ydlelraav+hd
  CDO70865.1 626 YKYKLMRQVRMTKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGIVPLLERWLGNLLARQFEGRNSKGIAKTVTKQRVESHYDLELRAAVMHD 724
                 *************************************************************************************************** PP

       PROCN 299 ildmlPegvkqskaktilqhlseafrcwkanipwkvPglpepienlilryvkakadewisvahynrerikrgatvdktvvkknlGrltrlylkeeqerq 397
                 ildm+Pe +kq+kaktilqhlsea+rcwkanipwkvPg+p++ien+ilry+k+kad+w+svahynreri+rgatvdk+vvkknlGrltrlylk+eqerq
  CDO70865.1 725 ILDMMPESIKQNKAKTILQHLSEAWRCWKANIPWKVPGMPTAIENIILRYIKSKADWWTSVAHYNRERIRRGATVDKAVVKKNLGRLTRLYLKAEQERQ 823
                 *************************************************************************************************** PP

       PROCN 398 aeylkdgpyi 407
                 + ylkdgpyi
  CDO70865.1 824 HGYLKDGPYI 833
                 ********97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.8
       PROCN  317 qhlseafrcwkanipwkvPglpepienlilryvkakadewisvahynrerikrg 370 
                    ++ a+  w a   w  Pgl   i++ + + +ka+      ++h  reri++g
  CDO70865.1 1736 IGMDLAYNLWSAFGNWF-PGLKPLIQQAMAKIMKANP-----ACHVLRERIRKG 1783
                  56788999999999996.***9999999999998865.....567788888887 PP

>> PRP8_domainIV  PRP8 domain IV core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.2   8.4e+03     128     193 ..    1091    1155 ..    1089    1172 .. 0.73
   2 !  423.2   0.4  1.2e-130  2.5e-127       1     230 []    1793    2022 ..    1793    2022 .. 1.00

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.2
  PRP8_domainIV  128 selkLPfkavlkiekladlvlkatepkmvlfnlyddWlesissytafsrlililralkinkekakk 193 
                     se++ P ++  +  +  d+ +++++p + l++ y d ++ +  +ta +   li r l+ n++ +++
     CDO70865.1 1091 SEMAGPPQMPNNFLQYRDVATETRHP-IRLYSRYVDRIHILFRFTAEEARDLIQRYLSANPDPTNN 1155
                     55555555555555666666655555.568999999999999999999999999999999887764 PP

  == domain 2  score: 423.2 bits;  conditional E-value: 1.2e-130
  PRP8_domainIV    1 eallnsqnyaelfsneiklfvddtnvyrvtvhktfeGnlttkpvnGavfilnPktGqlflkvihtsvwagqkrlsqlakwkaaeevaalvrslP 94  
                     e++lnsqny+elfsn+i++fvddtnvyrvt+hktfeGnlttkp+nGa+fi+nP++Gqlflk+ihtsvwagqkrl+qlakwk+aeevaalvrslP
     CDO70865.1 1793 EPYLNSQNYSELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRSGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLP 1886
                     89******************************************************************************************** PP

  PRP8_domainIV   95 veeqPkqiivtrkglldplevhlldfPnivikgselkLPfkavlkiekladlvlkatepkmvlfnlyddWlesissytafsrlililralkink 188 
                     veeqPkq+ivtrkg+ldplevhlldfPnivikgsel+LPf+a++k+ek++dl+l+at+p+mvlfnlyddWl+sissytafsrlil+lr+l++n+
     CDO70865.1 1887 VEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACMKMEKFGDLILRATQPQMVLFNLYDDWLKSISSYTAFSRLILLLRGLHVNQ 1980
                     ********************************************************************************************** PP

  PRP8_domainIV  189 ekakkilkpdkevvvkehhlwptlsdeeWvevevklrdlila 230 
                     ekak il+pdk++++++h +wp+lsdeeW++vev+l+dlila
     CDO70865.1 1981 EKAKIILRPDKNTITEPHFVWPSLSDEEWIKVEVALKDLILA 2022
                     ****************************************95 PP

>> U6-snRNA_bdg  U6-snRNA interacting domain of PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.9   9.8e+03      55      84 ..    1406    1435 ..    1401    1437 .. 0.82
   2 !  291.9   2.3   5.9e-91   1.2e-87       2     159 .]    1476    1633 ..    1475    1633 .. 0.99
   3 ?   -2.5   0.0       2.2   4.3e+03     133     157 ..    1662    1686 ..    1657    1687 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.9
  U6-snRNA_bdg   55 ksweglvwdkasgfeeslkakkltnaqrsG 84  
                    + we  ++d+a  + e+  ++k +naq + 
    CDO70865.1 1406 QPWEAEFLDSARVWSEYSMKRKEANAQNRR 1435
                    679999999999999999999999999765 PP

  == domain 2  score: 291.9 bits;  conditional E-value: 5.9e-91
  U6-snRNA_bdg    2 kkyqllksekfawtsarhdgkllnleryradviealGgveailehtlfkatsfksweglvwdkasgfeeslkakkltnaqrsGlsqiPnrrftlW 96  
                    k+yqllk+++f+wts+rhdgkl++l++yr dvi+alGgve+ilehtlfk+t+f++wegl+w+kasgfees+++kkltnaqrsGl+qiPnrrftlW
    CDO70865.1 1476 KQYQLLKHNPFWWTSQRHDGKLWQLNNYRVDVIAALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMRYKKLTNAQRSGLNQIPNRRFTLW 1570
                    89********************************************************************************************* PP

  U6-snRNA_bdg   97 WsPtinranvyvGfqvqldltGvfmhgklptlkisliqifrahlWqkihesvvmdllqvldde 159 
                    WsPtinranvyvGfqvqldltG+fmhgk+ptlkisliqifrahlWqkihesvvmdl+qv+d+e
    CDO70865.1 1571 WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQE 1633
                    *************************************************************96 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.2
  U6-snRNA_bdg  133 iqifrahlWqkihesvvmdllqvld 157 
                    i +f+a  W+  + s+v+d  +vld
    CDO70865.1 1662 ILLFSAYKWNIARPSLVTDSKDVLD 1686
                    779****************999987 PP

>> PRO8NT  PRO8NT (NUC069), PrP8 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.57   1.1e+03       3      29 ..      46      72 ..      44      76 .. 0.72
   2 !  284.0   2.3   1.2e-88   2.5e-85       1     152 []      80     231 ..      80     231 .. 1.00
   3 ?   -2.6   0.0       2.4   4.7e+03      42      68 ..     722     748 ..     717     760 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.57
                ---HHHHHHHHHHHTTT-SGGGTTTHH CS
      PRO8NT  3 elPpehlRkiikdhgdlsskkfksdkr 29
                ++Ppe l +  ++  ++++k++ + ++
  CDO70865.1 46 RMPPEVLAQKSQKWIQMQKKRYGEKRK 72
                677777777777777777777776654 PP

  == domain 2  score: 284.0 bits;  conditional E-value: 1.2e-88
                 -----HHHHHHHHHHHTTT-SGGGTTTHHHHHHHHTTSHHHHHHHHTT---TT-S--B--EEEETTT--EEE-----B-HHHHHHHHHHHHHHHHHHHH CS
      PRO8NT   1 keelPpehlRkiikdhgdlsskkfksdkrvylgalkylPhavlkllenmpmpweevrevkvlyhvtgaitfvneiprviepvylaqwstmwiamrrekr 99 
                 k++lPpeh+Rkiikdhgd+s++kf++dkrv+lgalky+Phav+kllen+p pwe+vrev vlyh+tgaitfvneiprviepvy+aqwstmw+amrrekr
  CDO70865.1  80 KQDLPPEHVRKIIKDHGDMSNRKFRNDKRVHLGALKYVPHAVMKLLENIPYPWEQVREVPVLYHITGAITFVNEIPRVIEPVYHAQWSTMWLAMRREKR 178
                 789************************************************************************************************ PP

                 TTS------SS-S-SSS----H.HHHHHH-----------TTTSTTTTTTTT- CS
      PRO8NT 100 drrhfkrlrfppfddeeppldyadnildvepleaiqleldeeedeavvdwlyd 152
                 drrhfkr+rfppfddeeppldy+dnildvepleaiqleld+eed+a+++w+yd
  CDO70865.1 179 DRRHFKRMRFPPFDDEEPPLDYGDNILDVEPLEAIQLELDPEEDAAIYEWFYD 231
                 ****************************************************9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.4
                 HHHHHTT---TT-S--B--EEEETTT- CS
      PRO8NT  42 vlkllenmpmpweevrevkvlyhvtga 68 
                 ++ +l+ mp   ++ +  ++l h + a
  CDO70865.1 722 MHDILDMMPESIKQNKAKTILQHLSEA 748
                 467999999999999999999998865 PP

>> U5_2-snRNA_bdg  U5-snRNA binding site 2 of PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.1     2e-76     4e-73       1     134 []    1243    1376 ..    1243    1376 .. 0.99

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 2e-76
  U5_2-snRNA_bdg    1 kegvwdlvnestkertakaflkvseeeiekfenrirqillssgsttftkiaakwntalialltyfreavvsteelldvlvkaetkiqtrvklg 93  
                      k++vw+l+ne+tkerta+afl+vs+e +++f+nrirq+l+ssgsttf+ki++kwntali+l+ty+reav++t+elld lvkae+kiqtrvk+g
      CDO70865.1 1243 KDAVWNLTNEQTKERTAQAFLRVSDEGVQQFNNRIRQVLMSSGSTTFSKIVNKWNTALIGLMTYYREAVIHTNELLDALVKAENKIQTRVKIG 1335
                      589****************************************************************************************** PP

  U5_2-snRNA_bdg   94 lnskmpsrfPpavfytPkelGGlGmlsaghvliPasdlkys 134 
                      lnskmpsrfPp+vfytPkelGGlGmls+ghvliP+sdl++s
      CDO70865.1 1336 LNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWS 1376
                      ****************************************8 PP

>> RRM_4  RNA recognition motif of the spliceosomal PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.5   1.1e-49   2.2e-46       1      91 [.    1018    1108 ..    1018    1109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 1.1e-49
       RRM_4    1 ekidltllnrllrlivdknladyitaknnvvltykdmshvnsyGlirGlqfssfvvqyyglvldllllGleraselaGpaekpneflqfkd 91  
                  ekidltllnrllrli+d+nladyitaknn vltykdm+h+n+yGlirGlqfs+fv+qyyglvldll+lGl+rase+aGp+++pn+flq++d
  CDO70865.1 1018 EKIDLTLLNRLLRLILDHNLADYITAKNNTVLTYKDMAHTNAYGLIRGLQFSAFVFQYYGLVLDLLILGLQRASEMAGPPQMPNNFLQYRD 1108
                  89***************************************************************************************87 PP

>> PROCT  PROCT (NUC072) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   3.8e-45   7.6e-42       1     122 [.    2247    2367 ..    2247    2368 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 3.8e-45
       PROCT    1 ivltvsftpgsvslsayklteeGyewgkknkdlasenpegfepsfsekvqllLsdrilGfflvPeegvWnysf.mgakfsekmkyelkldiPkeFyd 96  
                  i++t++ftpgsvslsa++lt  G+ewg+kn+d+ s np gf+p++se+vqllLsdrilG++lvPe +vWny + +++ +s++ +y+++ld+P+ F++
  CDO70865.1 2247 ICITCAFTPGSVSLSAHQLTVPGFEWGRKNTDT-SPNPPGFNPNMSERVQLLLSDRILGMTLVPEGRVWNYGIgLTQLWSPNIHYTVQLDTPLLFWA 2342
                  79******************************9.78*************************************99********************** PP

       PROCT   97 elHRpthFlqfaeleeeeeleadqed 122 
                  e HRp+ Fl+fa+le+  +++ad e+
  CDO70865.1 2343 EEHRPAAFLSFANLET-GDDSADVEN 2367
                  **************65.778888876 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.021      15     117 ..    2144    2240 ..    2138    2241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHHTS--EEEEEEEESSSE..EEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-SS--HHHHHHH CS
         JAB   15 kildhalrtekeeeevmGlliGelnddt..tveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpditvwlsevdvrtq 109 
                  + l+h+   +    +v+  l+G    d+  + e+ +++ +p+++++++ +  s+         + l +   +++ +GW++++      ls+ dv+tq
  CDO70865.1 2144 NLLRHFVTAADLRTQVAAFLYGVSPPDNkqVKEVKAIVWVPQRGNNNSIELPSQLPR-----DDFLLR---DLEPLGWIKTQALELPHLSPTDVTTQ 2232
                  6788888888888999999****9999777888888888888888888555555555.....555555...49**********999*********** PP

                  HHHHHHST CS
         JAB  110 alyqrmde 117 
                  a++++ ++
  CDO70865.1 2233 AKIMAEHP 2240
                  **998776 PP

>> Corona_5a  Coronavirus 5a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00021      0.42      14      58 ..    1016    1060 ..    1004    1066 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
   Corona_5a   14 cyksllltqlrvldrlildhGllrvltcsrrvllvqldlvyrlay 58  
                   y  + lt l  l rlildh l   +t     +l   d+ +  ay
  CDO70865.1 1016 VYEKIDLTLLNRLLRLILDHNLADYITAKNNTVLTYKDMAHTNAY 1060
                  689999***********************9999999999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.23u 0.31s 00:00:01.54 Elapsed: 00:00:00.52
# Mc/sec: 13833.41
//
Query:       CDO70866.1  [L=744]
Description: hypothetical protein BN946_scf184801.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4871.09
//
Query:       CDO70867.1  [L=160]
Description: hypothetical protein BN946_scf184801.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1198.39
//
Query:       CDO70868.1  [L=321]
Description: hypothetical protein BN946_scf184801.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-78  261.5   0.0    6.7e-78  261.2   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    8.9e-15   55.2   0.0    2.8e-14   53.6   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    2.3e-11   44.2   0.0    4.5e-11   43.3   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    2.5e-11   43.6   0.0    4.1e-11   42.9   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    3.6e-10   40.5   0.0    9.7e-10   39.1   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
    4.4e-10   39.6   0.0      7e-10   39.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.035   14.1   0.0       0.14   12.2   0.0    2.1  3  ADH_zinc_N       Zinc-binding dehydrogenase
       0.15   11.9   0.0       0.34   10.7   0.0    1.6  1  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2   0.0     3e-81   6.7e-78       4     233 .]      70     320 ..      64     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 261.2 bits;  conditional E-value: 3e-81
                      XXXXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHH.HHHHH--S--T.TEEEEES-TT-HHHHHHHHHHHHHH.....EEEEEES-HHHHHHHHH CS
  Ubie_methyltran   4 lkeekvkevfesvaskyDlmndvlslgihrlWkk.fveklvavkrg.akvlDvagGtgDlafklsdsvgekg.....kvvvlDinenmLkvgek 90 
                       ke+ v++vfesvas+yD+mnd +slg+hrlWk+ fv +l+ + rg  + +DvagGtgD+a++++d ++ek+      v+v+Din++mLk+g k
       CDO70868.1  70 QKENLVRNVFESVASSYDVMNDAMSLGVHRLWKDdFVARLKPGARGpMRCIDVAGGTGDIALRILDFAREKYadretSVDVVDINAEMLKEGYK 163
                      46666*****************************9****9977665169*********************99999999**************** PP

                      HHHHHTSS...TEEEEE--TTT-TTS-...T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHH CS
  Ubie_methyltran  91 klkeegki...nieflqanaeeLpfed...dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlG 178
                      + k++ +    ++ f qana+++p+++   +++D++t++fG+rn t ++ +LkeayrvlkpGG++ +lefs+v++plls+ y++ys++++P lG
       CDO70868.1 164 RFKKTMYHntpQVAFKQANAQAMPESEfpsNTYDLYTIAFGIRNCTSIPDVLKEAYRVLKPGGTFACLEFSRVNNPLLSTLYDQYSFSIIPLLG 257
                      ***999988889**********98665555**************************************************************** PP

                      HHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEEEE........EEEEGGGTEEEEEEEE CS
  Ubie_methyltran 179 kllakdldsyryLvesirafPdqetlkeliedaGfksve........yesltgGvvaihigvk 233
                       +la d +sy+yLvesir+fP q +++++i daGf++          +++l gG+++ih+gvk
       CDO70868.1 258 TILAGDRESYQYLVESIRKFPPQPEFAKMIADAGFTTGAmhegkggaWTDLWGGIASIHTGVK 320
                      ***********************************8765111111225567889999999998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.8   6.3e+03      68      91 ..      58      80 ..      21      84 .. 0.60
   2 !   53.6   0.0   1.3e-17   2.8e-14       2      97 .]     120     226 ..     119     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.8
                     EEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25 68 vvssgalhhlsdedlekalkeiar 91
                     v+  +++  +++e+ e++++++++
       CDO70868.1 58 VTH-FGFKTVPEEQKENLVRNVFE 80
                     333.56777788888888887765 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 1.3e-17
                      EEET-TTSHHHHHHHCTS.....T.SSEEEEEESSHHHHHHHHHHHHH....TTTTEEEEESBCCGBS...SSTTTEEEEEEESTGGGSSHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.....g.kakvtgvDiseemleaareraee....eglnvefvqgdaedlp...fedgsfDlvvssgalhhlsdedl 82 
                      +d++ GtG+++l++++         + +v  vDi++eml++  +r+++    + ++v f q++a+++p   f+++++Dl ++++++  ++   +
       CDO70868.1 120 IDVAGGTGDIALRILDFArekyaDrETSVDVVDINAEMLKEGYKRFKKtmyhNTPQVAFKQANAQAMPeseFPSNTYDLYTIAFGIRNCT--SI 211
                      59*******99886655443345259*****************999996665555************98889**********98877655..89 PP

                      HHHHHHHHHHEEEEE CS
  Methyltransf_25  83 ekalkeiarvLkpgG 97 
                      +++lke++rvLkpgG
       CDO70868.1 212 PDVLKEAYRVLKPGG 226
                      99************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0     2e-14   4.5e-11       2      96 .]     121     230 ..     120     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2e-14
                      EET-TTSHHHHHHH.....HTT....SEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCTS...S-TT-EEEEEEES-CCC-CCHHH CS
  Methyltransf_11   2 dvGcGtGrlaeala.....krg....arvvgvDlskemlklakekaseegl....kvefvvadaeklp...fednsfDlvvssevlhhvedpek 79 
                      dv+ GtG +a  +      k +    ++v  vD+++emlk   ++ ++       +v f +a+a+ +p   f++n++Dl ++ + + ++    +
       CDO70868.1 121 DVAGGTGDIALRILdfareK-YadreTSVDVVDINAEMLKEGYKRFKKTMYhntpQVAFKQANAQAMPeseFPSNTYDLYTIAFGIRNCTSIPD 213
                      66667776666666455532.24555888899999999966544443333346779*********998889*********************** PP

                      HHHHHHHHEEEEEEEEE CS
  Methyltransf_11  80 alkeiaRvLkpgGllvi 96 
                      +lke++RvLkpgG++++
       CDO70868.1 214 VLKEAYRVLKPGGTFAC 230
                      *************9975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.8e-14   4.1e-11       4     113 ..     116     234 ..     113     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 1.8e-14
  Methyltransf_31   4 glrvlDlGCGtGeltfelae...elgpkae..vvGiDiseeaielArenaqklgld...nveFeqgdieelekl.ledekfDlilsnevlnala 88 
                       +r +D++ GtG++++++ +   e + + e  v  +Di++e+++   ++ +k  +     v F+q+++++++++ +  +++Dl +    +   +
       CDO70868.1 116 PMRCIDVAGGTGDIALRILDfarEKYADREtsVDVVDINAEMLKEGYKRFKKTMYHntpQVAFKQANAQAMPESeFPSNTYDLYTIAFGIRNCT 209
                      5899***************9888666655566999********************97778***********************77766667777 PP

  Methyltransf_31  89 dpdkileeiervlkpggilliedpr 113
                      + +++l+e+ rvlkpgg +++ +++
       CDO70868.1 210 SIPDVLKEAYRVLKPGGTFACLEFS 234
                      7889****************99998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   5.4e+03      64      70 ..      73      89 ..      24     113 .. 0.62
   2 !   39.1   0.0   4.3e-13   9.7e-10       2      99 .]     121     228 ..     120     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
  Methyltransf_12 64 g..........ssfDlv 70
                     +          ss+D+ 
       CDO70868.1 73 NlvrnvfesvaSSYDVM 89
                     23444444555666664 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 4.3e-13
  Methyltransf_12   2 eiGcGtGsllrallekl......pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDlvvasnvlhhlkdirev 85 
                      ++ +GtG+++ ++l+        +++++ +vDi++++++   ++++k   +n+ +v +++ ++   +++    +++Dl ++++ + ++  i +v
       CDO70868.1 121 DVAGGTGDIALRILDFArekyadRETSVDVVDINAEMLKEGYKRFKKTMYHNTPQVAFKQANAQAMPESefpsNTYDLYTIAFGIRNCTSIPDV 214
                      899*******99999999999*9999999*********************************99888889************************ PP

  Methyltransf_12  86 ldnirklLkpgGrl 99 
                      l++++++LkpgG +
       CDO70868.1 215 LKEAYRVLKPGGTF 228
                      ************75 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.1e-13     7e-10      10     160 ..     103     292 ..      93     295 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3.1e-13
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtG.illevl...rengf....svtgvDlspeaveiae.........kakkaqkdqfdeq...eaaepqgkf 83 
                      +d+++rl p  r ++r++d++ GtG i l++l   re+ +    sv++vD++ e+ ++           ++++  ++q+++q   e ++p++++
       CDO70868.1 103 DDFVARLKPGARGPMRCIDVAGGTGdIALRILdfaREKYAdretSVDVVDINAEMLKEGYkrfkktmyhNTPQVAFKQANAQampESEFPSNTY 196
                      3888999988999************8888888886443324444999999987765544389999999988888888888886666666***** PP

  Methyltransf_23  84 dlIvlrevlehvpdppellrqiatllkpgGylllseplasl.....................kedrllld......wlylvpagrhisffsars 150
                      dl +  +++ +  + p +l+ +++ lkpgG + ++e+ +                                     ++ylv+    ++f    +
       CDO70868.1 197 DLYTIAFGIRNCTSIPDVLKEAYRVLKPGGTFACLEFSRVNnpllstlydqysfsiipllgtI------LagdresYQYLVES--IRKFPPQPE 282
                      *******************************99999743213334444444444444443331......03333336666655..667777777 PP

  Methyltransf_23 151 lkelleeaGl 160
                      ++++  +aG+
       CDO70868.1 283 FAKMIADAGF 292
                      7777777777 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.8   4.1e+03      36      66 ..      64      82 ..      20      98 .. 0.54
   2 ?   -1.8   0.0       1.3   2.8e+03      27      52 ..      89     111 ..      77     135 .. 0.69
   3 ?   12.2   0.0     6e-05      0.14      64     125 ..     207     271 ..     150     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.8
                SEEEETTTCHHHHHHHHHTTTSSEEEEEESS CS
  ADH_zinc_N 36 devinykeadlverikeltggegvdvvfecv 66
                + v  ++            +++ v  vfe v
  CDO70868.1 64 KTVPEEQ------------KENLVRNVFESV 82
                3333331............233333334333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 HHHHHHTTESEEEETTTCHHHHHHHH CS
  ADH_zinc_N  27 lelakklGadevinykeadlverike 52 
                    a++lG++++      d+v+r+k 
  CDO70868.1  89 MNDAMSLGVHRLWKD---DFVARLKP 111
                 566889999888888...88888874 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 6e-05
                 ESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE..EEHHHHH.HTT-EEEEE-SSCHHHHHHHHH CS
  ADH_zinc_N  64 ecvGsgatleaalkllkpgGrlvvvGggkgeee..fdlrnll.lkeksilGsllgslreefkeal 125
                 +c+ ++++l++a+++lkpgG++++  ++  +++   +l+++  +  + +lG++l++ re+++ ++
  CDO70868.1 207 NCTSIPDVLKEAYRVLKPGGTFACLEFSRVNNPllSTLYDQYsFSIIPLLGTILAGDRESYQYLV 271
                 899********************999866666654555555557777778888888666666565 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.34     135     159 ..     209     233 ..     193     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                     S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8 135 tnladflkeanrvlkvGGllkvaev 159
                     t + d lkea+rvlk+GG +   e 
      CDO70868.1 209 TSIPDVLKEAYRVLKPGGTFACLEF 233
                     78899*************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2212.73
//
Query:       CDO70869.1  [L=280]
Description: hypothetical protein BN946_scf184804.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-22   79.7   0.0    2.8e-22   79.2   0.0    1.1  1  ECH_1          Enoyl-CoA hydratase/isomerase
    7.2e-08   32.3   0.0    8.8e-08   32.0   0.0    1.1  1  ECH_2          Enoyl-CoA hydratase/isomerase
     0.0062   16.5   0.0        3.1    7.7   0.0    2.2  2  Peptidase_S49  Peptidase family S49


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   4.7e-26   2.8e-22      78     190 ..     105     224 ..      72     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 4.7e-26
                 HHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTE....EE-GGGGGTS--CTTCHHHHHHHHH.HHHHHHHHHHT-EEEHHHHHHCTSSS CS
       ECH_1  78 lelwtklytvpkpviaavnGaaigGGlelalacDiviaadnas....fglnelklGlipgaggtqilarkvG.kskAeeilllgkkisaqealkvGlvd 171
                 +   ++l+ +p+p+iaavnG+a++GG+ la+acD++++ d ++    ++ ne+++G + +  +  il  k +  ++ ++i+l g++++++eal+vGlvd
  CDO70869.1 105 NPMIERLLALPIPTIAAVNGHAFAGGMALAMACDYRVMTDGSKrnawISMNEIQFGATLPLSLAAILKAKAPnPQILRKIILEGHRFTPKEALEVGLVD 203
                 56678999******************************986666666**********99999999998888725889********************** PP

                 EEESG..GGHHHHHHHHHHHH CS
       ECH_1 172 kvvpe..eqlleealelaekl 190
                 +++p   e++  ea +la  l
  CDO70869.1 204 RIIPGttEDIIAEAQSLADSL 224
                 ****76688888888887776 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.5e-11   8.8e-08      20     178 ..      44     212 ..      27     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.5e-11
                 HHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHH........HHHHHHC-SS-EEEEE-BEEETHHHHHHTTSS CS
       ECH_2  20 vralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYk........lnyliatypkpvvalmdGivmGgGvGlsvhgs 110
                 +r + +al+++ek+ + +    k+++++++C G D  +  ++ + g++    ff + ++        +  ++  +p p++a ++G +  gG++l++ + 
  CDO70869.1  44 LRGIIPALDTVEKHWRENWRAGKAKKDEGLCKGLDYDNAIKDPSFGTN----FFPSMHRltypiynpMIERLLALPIPTIAAVNGHAFAGGMALAMACD 138
                 566778888888888888888899999999999998888888777653....4444444000011124456667999********************** PP

                 EEEE-TT-....EEE--GGGGT----TTHHHHHHC.SST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHH CS
       ECH_2 111 frvvtert....vfAmPEtaIGlfPDvGgsyfLsr.lpg.elGlylalTGarlkgadalaaglathyvpsekle 178
                 +rv+t+ +     ++m E++ G +       +L+  +p+ ++ + + l G+r++ ++al++gl + ++p +  +
  CDO70869.1 139 YRVMTDGSkrnaWISMNEIQFGATLPLSLAAILKAkAPNpQILRKIILEGHRFTPKEALEVGLVDRIIPGTTED 212
                 *****855222279*********99999998887636767999*************************976533 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0013       7.6       7      35 ..     116     144 ..     111     148 .. 0.91
   2 !    7.7   0.0   0.00052       3.1     119     151 ..     187     221 ..     179     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
                    --EEEEEEEEEETHHHHHHTTSSEEEE-T CS
  Peptidase_S49   7 kPvvasaenvaaSggYylasaadkivanp 35 
                    +P +a +++ a  gg  la+a+d+ v++ 
     CDO70869.1 116 IPTIAAVNGHAFAGGMALAMACDYRVMTD 144
                    799***********************986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00052
                    CCHEEEHHHHHHTTSSSEE..TSHHHHHHHHHHHC CS
  Peptidase_S49 119 egrvltgqqAlklgLvdel..gtvddavaeleela 151
                    eg+ +t ++Al++gLvd++  gt +d++ae++ la
     CDO70869.1 187 EGHRFTPKEALEVGLVDRIipGTTEDIIAEAQSLA 221
                    7899**************98889999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1985.24
//
Query:       CDO70870.1  [L=510]
Description: hypothetical protein BN946_scf184804.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-69  235.0   1.4    1.6e-69  234.8   1.4    1.1  1  Asp       Eukaryotic aspartyl protease
    6.6e-09   36.2   1.4    1.1e-07   32.2   0.3    2.6  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.8   1.4   1.8e-73   1.6e-69       2     314 ..     193     508 ..     192     509 .. 0.93

  Alignments for each domain:
  == domain 1  score: 234.8 bits;  conditional E-value: 1.8e-73
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHC...HHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssa...ckshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkep 97 
                 Y+++i++Gtp+++f++++D GS+dlWV  ++c+  +a   c +h++  +++Sst+k+ g++++++YG+g+v G + qd+++v+gl +++ +fg a +e+
  CDO70870.1 193 YIATIQMGTPPRDFHILMDSGSADLWVGGENCQS-QAgggCGNHQFLGSQSSSTFKDLGQQFQVTYGTGAVAGNVIQDNINVAGLALNGHTFGVAAEET 290
                 9*******************************95.44467*******************************************************9999 PP

                 SHHHT.TSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-S..TTSSEEEEEESSEEGGGEEEE.EEEEEESS.TSSTEEEEEEEEETTE CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxx RF
         Asp  98 gstfl.aakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnr..eeeeggeivfGgvDeskykGs.ltyvpvts.kgywqielesvtvggk 191
                 + +   +++fdG++Gl+ +++s +++ ++++ l s+gli+e + s  ++r  ++++ gei+fG++D++k+  + l+++pv+s +g+w+  ++ v+v+g+
  CDO70870.1 291 ADFSDdSVPFDGLMGLAQSTLSEQGVPTPVEALASAGLIDEAITSYKISRlaDNKNDGEITFGALDQTKFDPNtLVTFPVVSkTGFWEGAMDAVSVDGQ 389
                 987651568********999999999999**********************9******************9652789999986899************* PP

                 EEEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE..EECCTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
         Asp 192 tvlcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl..vseeegdl 288
                  +   +g  ailDtGT+l+++p   ++++ +ai +++s  +g +++ C++   ++++++t++g+ + + +++lv+++ ++  + C +g+   + +++ +
  CDO70870.1 390 DL-GLQGRTAILDTGTTLIVAPPADAAAVHQAIPGAQSDGQGGFIIPCNT---NASVALTFSGQAFAIDTRDLVFQQLDE--ENCASGIssGEIDGETT 482
                 **.999*********************************99********6...888889999***************986..58*****6555678899 PP

                 EEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 289 wiLGdvFlrsayvvfdldnnrvglAe 314
                 w++GdvFl++ay+  d+++n+++lA+
  CDO70870.1 483 WLVGDVFLKNAYFSTDVTKNTISLAK 508
                 *************************8 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.2   1.1e+04      69      97 ..     136     164 ..     103     175 .. 0.55
   2 !   32.2   0.3   1.3e-11   1.1e-07       1     144 [.     193     312 ..     193     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.2
      TAXi_N  69 saksgsssstceyeisygadgssssGvla 97 
                  a+ g+ ++  +++++ +  g++s+G+  
  CDO70870.1 136 AAQGGKGKKHKQAQAQAAGSGGNSTGTTD 164
                 33333333344444444333335555554 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.3e-11
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y+++i++Gtpp+++ +++D Gs  +Wv  ++c+                + +   c++++       s+++s+ ++   +++++yg  g  ++G++++d
  CDO70870.1 193 YIATIQMGTPPRDFHILMDSGSADLWVGGENCQ----------------SQAGGGCGNHQFL----GSQSSSTFKDLGQQFQVTYG-TG-AVAGNVIQD 269
                 9****************************7776................7888999999999....67777777788889999997.55.9******** PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgksnlgglaa...gadGilGLGrgklS 144
                 ++ +      +  ++  +fG + +++ ++ +     dG++GL+++ lS
  CDO70870.1 270 NINV-----AGLALNGHTFGVAAEETADFSDdsvPFDGLMGLAQSTLS 312
                 ****.....899*********998888887744458*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3427.56
//
Query:       CDO70871.1  [L=523]
Description: hypothetical protein BN946_scf184804.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-50  172.4   0.0    3.3e-50  170.9   0.0    1.7  1  Pkinase      Protein kinase domain
    2.8e-18   66.1   0.0    1.2e-17   64.0   0.0    2.0  2  Pkinase_Tyr  Protein tyrosine kinase
      0.007   16.0   0.6      0.035   13.7   0.1    2.2  3  RIO1         RIO1 family
  ------ inclusion threshold ------
      0.067   12.5   0.4        3.8    6.7   0.0    2.3  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0   7.3e-54   3.3e-50       1     264 []     189     515 ..     189     515 .. 0.81

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 7.3e-54
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEEC...HCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikk...ekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.rkgs. 94 
                 y++++ lG+G+fGkV++av++et+k vA+K+i+     ++ +k e +vl+ +k    l+  + ++l+ +f + ++++lv e++    + d+l+ ++ + 
  CDO70871.1 189 YRTVRLLGQGTFGKVVEAVDTETNKRVAIKIIRAipkYRDASKIEVRVLQKLKERDPLNRHKCIHLLTWFDHRNHICLVSELLGMC-VYDFLKeNDFAp 286
                 678899************************997611033334444555555555566668899********************977.667777344447 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET.........................TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLide.........................kgelKitDFGlakelessskltsfvgtseYlAPEv 168
                 ++ ++++++a+q+l ++++lH+ ++iH DlKpeNiL+ +                         + +++++DFG a+  e+ +  +s+v t++Y+APE+
  CDO70871.1 287 FPRHHIQSFARQLLGSVAFLHELHLIHTDLKPENILLVNneyqvvqvptsskrgaptrnkrilhSTDIRLIDFGSATFEEEYH--SSVVSTRHYRAPEI 383
                 **************************************76899999999999888887777765556*********9988865..9************* PP

                 HTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT............SHH...HHHTTS...................... CS
     Pkinase 169 lkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg............etkeklpeasei...................... 233
                 + + + s ++D +slG+il+e++tg  +f+ +++ e       +l ++ +++g                                              
  CDO70871.1 384 ILGLGWSYPCDAFSLGCILVEFYTGVALFQTHDNLE-------HLAMMEQVMGkmperfarsgarA----------Kpeyfkegskldwpkpkatrqsk 465
                 ******************************444433.......33333344442212222333441..........1334455666677777777**** PP

                 ...................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                    +++++dl+kkll+ dp +R+t++e+l+hpy+
  CDO70871.1 466 kevracrslqeiipatdtiNRQFLDLVKKLLTFDPAQRITVKEALNHPYF 515
                 *************************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   2.7e-21   1.2e-17       4     220 ..     192     426 ..     189     438 .. 0.83
   2 ?   -1.3   0.0      0.24   1.1e+03     215     255 ..     469     509 ..     456     512 .. 0.76

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 2.7e-21
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                   + lG+G+fGkVve+  +    +++ +Va+K++++  + ++    + ++l+ +k    l+ ++ ++ll +  +++++++v e++   ++ +fL++++ 
   CDO70871.1 192 VRLLGQGTFGKVVEAVDT----ETNKRVAIKIIRAIPKYRDaskiEVRVLQKLKERDPLNRHKCIHLLTWFDHRNHICLVSELLGM-CVYDFLKENDF 284
                  578************988....88999*****9653333320012445555555556666777888888888***********976.89********* PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.........................TTEEEE-STTTHEETTTSSEEEETTSSTSGGG CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.........................nkvvkisDfGLardiekddeyvkkeeaklpvk 170
                  +++  +++ sfa q+   +++L++ +l+H dl   N+Ll +                         ++ +++ DfG a      +ey+  ++     +
   CDO70871.1 285 APFPRHHIQSFARQLLGSVAFLHELHLIHTDLKPENILLVNneyqvvqvptsskrgaptrnkrilhSTDIRLIDFGSATFE---EEYH--SSVVSTRH 377
                  **************************************9999*******************99998888999999977755...4443..44556678 PP

                  GS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 171 WmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklke 220
                  + apE++     +   D +s G +l E +t g   +++ +n e l+++++
   CDO70871.1 378 YRAPEIILGLGWSYPCDAFSLGCILVEFYT-GVALFQTHDNLEHLAMMEQ 426
                  99**************************99.8888888887777766643 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.24
                  HHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 215 leklkegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                   +  + ++ +++ +++++++ +l+kk ++ dp++R t +e 
   CDO70871.1 469 RACRSLQEIIPATDTINRQFLDLVKKLLTFDPAQRITVKEA 509
                  44445566678889999999***************999875 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.41   1.9e+03       6      27 ..     207     228 ..     202     256 .. 0.59
   2 !   13.7   0.1   7.7e-06     0.035      82     159 ..     265     343 ..     228     372 .. 0.74
   3 ?   -1.7   0.0      0.41   1.8e+03      44      78 ..     452     484 ..     435     510 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.41
                 EE.TTTEEEEEEEE-S---SS-H CS
        RIO1   6 vs.edgkevaiKiyktstteFkk 27 
                 v+ e++k vaiKi +  + ++++
  CDO70871.1 207 VDtETNKRVAIKIIRA-IPKYRD 228
                 4436777889998875.334444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.7e-06
                 EEEEE--EETTEEGGBHHHCG-...HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTSTT CS
        RIO1  82 vlvmefigedgvaapklkdvee...eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpn 159
                 +lv e++g   +   k +d      ++++++ ++++l +++ +++e +l+H DL   N+l+ +++  ++ v+ + +   p 
  CDO70871.1 265 CLVSELLGMCVYDFLKENDF-ApfpRHHIQSFARQLLGSVA-FLHELHLIHTDLKPENILLVNNEYQVVQVPTSSKRGAPT 343
                 57777777444444444444.23567888999999999755.556***********************9999887776654 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.41
                 GS-H.HHHHHHHHHHHHHHHHHHHHTT--S--EEEE CS
        RIO1  44 ktnp.rklvklwaekEfrnLkrleeagvpvPkpiel 78 
                 k ++ +  +    +kE+r+ + l+e+ +  P   ++
  CDO70871.1 452 KLDWpKPKATRQSKKEVRACRSLQEI-I--PATDTI 484
                 44441445566789999999999998.4..444333 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00084       3.8      10      46 ..     185     221 ..     178     248 .. 0.79
   2 ?    3.5   0.1    0.0082        37     152     179 ..     298     325 ..     277     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00084
  Kinase-like  10 rertlvrgellkkgdrsvvfevkdqetgeplavkvfl 46 
                   +r +  + ll++g +++v+e+ d et++ +a+k+  
   CDO70871.1 185 IYRRYRTVRLLGQGTFGKVVEAVDTETNKRVAIKIIR 221
                  6899999*************************99764 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0082
  Kinase-like 152 qlirlaanLqakglvhgkftvdnlllde 179
                  ql+  +a L+++ l+h++++++n+ll +
   CDO70871.1 298 QLLGSVAFLHELHLIHTDLKPENILLVN 325
                  4445599*****************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3233.68
//
Query:       CDO70872.1  [L=1187]
Description: hypothetical protein BN946_scf184804.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-73  244.5   0.0    7.3e-73  244.0   0.0    1.2  1  MOZ_SAS         MOZ/SAS family
    5.7e-21   73.9   0.6    2.5e-20   71.8   0.1    2.3  2  zf-MYST         MYST family zinc finger domain
    1.9e-17   62.9  22.1    1.9e-09   37.3   5.8    3.3  3  PHD             PHD-finger
    0.00056   19.4  12.7      0.021   14.4   1.5    3.6  3  PHD_2           PHD-finger
  ------ inclusion threshold ------
        5.5    7.1  14.3        1.6    8.8   0.0    4.1  4  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
        8.5    6.4  13.2         18    5.4   1.0    2.5  2  Prok-RING_1     Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.0   0.0   2.4e-76   7.3e-73       1     176 [.     527     701 ..     527     704 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.0 bits;  conditional E-value: 2.4e-76
     MOZ_SAS   1 ppGkeiYrkeklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegahivGyFskekesaeeynlaCilvlPpyqrkgyGklli 99 
                 ppG+eiYr+ ++s+fevdG+k+k+ycqnLcll+k+Fldhk+l+ydvepFlfYv+te+d+ gah++GyFskek s ++ynl+Ci++lP  qr+g+G+ll+
  CDO70872.1 527 PPGDEIYRDGRISIFEVDGRKNKIYCQNLCLLSKMFLDHKSLFYDVEPFLFYVMTETDDMGAHFIGYFSKEKLSLKSYNLSCIMTLPVRQRQGWGNLLM 625
                 8************************************************************************************************** PP

     MOZ_SAS 100 efsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkekekkkisieeisektgikeeDiistleelkllkya 176
                 +fsY Lsk+e+++g+PekPls lg + yr+ w+ +i+++l++ +  +  +e+is +t+++ eDi +tl +l++++ +
  CDO70872.1 626 DFSYLLSKKEGRVGSPEKPLSALGAIGYRNLWTLSIMRYLRN-APPDPRLEDISAATAMTLEDIYNTLVHLNMISVK 701
                 ****************************************98.55889*************************9876 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.61   1.8e+03      28      38 ..     185     195 ..     181     195 .. 0.84
   2 !   71.8   0.1   8.2e-24   2.5e-20       4      55 .]     469     522 ..     467     522 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.61
     zf-MYST  28 nkekLyvCefC 38 
                 n++ + +C+fC
  CDO70872.1 185 NEASMLICDFC 195
                 667889***** PP

  == domain 2  score: 71.8 bits;  conditional E-value: 8.2e-24
     zf-MYST   4 iekieiGeyeiktWYfSpYPeelanke..kLyvCefClkYmksakelerHkkkC 55 
                 i++i++G+++i+tWY +p+Pee+a+++  +L++CefClkYmks+ ++ rH++kC
  CDO70872.1 469 IRRIRFGDFDIETWYDAPFPEEYASVPdgRLWMCEFCLKYMKSRFSAGRHQTKC 522
                 89*********************9877558************************ PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   6.2   3.5e-11   1.1e-07       2      52 .]     122     177 ..     121     177 .. 0.92
   2 !   37.3   5.8   6.3e-13   1.9e-09       2      49 ..     177     221 ..     176     223 .. 0.96
   3 ?    1.4   0.1       0.1     3e+02      35      50 ..     490     506 ..     486     508 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.5e-11
                 BTTTTS.....TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHTT CS
         PHD   2 CavCkk.....ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCkek 52 
                 C +C++     k+ e+e +v+C +C+r+ H++C++++   +   + ew+C +Ck++
  CDO70872.1 122 CGFCHGndamnKNGEPELMVSCVDCGRSGHPSCMGLDNMGDALRSYEWQCATCKSC 177
                 99**99988877788**********************998888888*******986 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 6.3e-13
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekC 49 
                 C+vC++ + +e  ++ Cd C+r  H++C +pp +  e peg+w C+ C
  CDO70872.1 177 CSVCRR-KGNEASMLICDFCDRGWHMSCFHPPFR--EPPEGRWHCPFC 221
                 ******.99***********************99..99999******* PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
                 SHHSHHSS.TBSSTTTH CS
         PHD  35 eseekpeg.ewlCekCk 50 
                 e +++p+g  w+Ce C 
  CDO70872.1 490 EYASVPDGrLWMCEFCL 506
                 5566677778******6 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.5     7e-06     0.021       2      36 .]     138     175 ..     137     175 .. 0.90
   2 !    8.8   0.9   0.00037       1.1       4      35 ..     189     221 ..     187     222 .. 0.84
   3 ?    1.9   0.1     0.054   1.6e+02      24      35 ..     494     505 ..     491     506 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7e-06
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgee...WlCrrCe 36 
                 ++++sC+ C  + H sC G+ ++ d+     W C+ C+
  CDO70872.1 138 ELMVSCVDCGRSGHPSCMGLDNMGDALRsyeWQCATCK 175
                 579*********************9865788******5 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00037
       PHD_2   4 llsCdkCsvaVHasCY..GvskesdgeeWlCrrC 35 
                 +l+Cd C    H+sC   +++++++g  W+C  C
  CDO70872.1 189 MLICDFCDRGWHMSCFhpPFREPPEG-RWHCPFC 221
                 799************95557777777.7***988 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.054
       PHD_2  24 esdgeeWlCrrC 35 
                  +dg  W+C+ C
  CDO70872.1 494 VPDGRLWMCEFC 505
                 578888****99 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.7       1.2   3.6e+03      22      31 ..     167     176 ..     163     183 .. 0.79
   2 ?   -6.5   6.6         6   1.8e+04      21      30 ..     187     196 ..     171     200 .. 0.68
   3 ?    5.0   0.1    0.0082        25      22      29 ..     214     221 ..     208     226 .. 0.86
   4 ?    8.8   0.0   0.00055       1.6      19      30 ..     495     506 ..     491     511 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
  zf-Sec23_Sec24  22 krwiCnfCnh 31 
                       w+C  C++
      CDO70872.1 167 YEWQCATCKS 176
                     5699999986 PP

  == domain 2  score: -6.5 bits;  conditional E-value: 6
  zf-Sec23_Sec24  21 gkrwiCnfCn 30 
                     +++ iC fC 
      CDO70872.1 187 ASMLICDFCD 196
                     4678999996 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0082
  zf-Sec23_Sec24  22 krwiCnfC 29 
                      rw C+fC
      CDO70872.1 214 GRWHCPFC 221
                     69****** PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00055
  zf-Sec23_Sec24  19 fggkrwiCnfCn 30 
                      +g++w+C+fC 
      CDO70872.1 495 PDGRLWMCEFCL 506
                     467********7 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.0     0.006        18       4      35 ..     119     155 ..     117     162 .. 0.75
   2 ?    5.2   5.2    0.0068        20       5      36 ..     175     205 ..     172     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.006
  Prok-RING_1   4 gkkCpvCg..kelkee...dDiVvCpeCgtpyHraCy 35 
                  +++C  C+  ++++++   + +V C +Cg + H +C 
   CDO70872.1 119 EEECGFCHgnDAMNKNgepELMVSCVDCGRSGHPSCM 155
                  5678888622446665555669**************5 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0068
  Prok-RING_1   5 kkCpvCgkelkeedDiVvCpeCgtpyHraCye 36 
                  k+C+vC+++ +e+  + +C+ C   +H +C++
   CDO70872.1 175 KSCSVCRRKGNEA-SMLICDFCDRGWHMSCFH 205
                  78******98887.899*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 7572.75
//
Query:       CDO70873.1  [L=177]
Description: hypothetical protein BN946_scf184804.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        0.1   12.0   0.1        0.2   11.1   0.1    1.4  1  zf-ribbon_3  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.1e-05       0.2      11      24 ..     142     155 ..     141     156 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.1e-05
  zf-ribbon_3  11 plssddnvCpyCGt 24 
                  ++++++ +C++CG+
   CDO70873.1 142 VIAPRWATCANCGE 155
                  689**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1239.36
//
Query:       CDO70874.1  [L=269]
Description: hypothetical protein BN946_scf184804.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-11   43.0   0.8    8.5e-11   42.1   0.8    1.5  1  GFA       Glutathione-dependent formaldehyde-activating enzym


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.8   4.7e-15   8.5e-11       2      92 ..     108     205 ..     107     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 4.7e-15
         GFA   2 lChCsdCrkasgsaftanavvkaealelleg...elkeykkt.adsgnkvtr.sfCpeCgsplyseesaapevvivrvGtlddp.....eklkpeaeif 90 
                 +ChC++C++ +g++f+++++++++++++++    +l  ++++  +  ++v     C++C sp++   + +++ v     ++  p      +++p+a+if
  CDO70874.1 108 HCHCRQCQHLHGAPFQWAVIFPKTSVRMVKNkdnSLHFFSTQrRQGIHDVPCkVSCDQCRSPIFD--EGRNT-VLAYPSSFKFPdrkvpLDFQPTAHIF 203
                 8**************************9999876666666554444455555589*********4..33332.33333333333334556777777777 PP

         GFA  91 tk 92 
                 ++
  CDO70874.1 204 YS 205
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1880.97
//
Query:       CDO70875.1  [L=103]
Description: hypothetical protein BN946_scf184804.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.18   11.9   0.3       0.38   10.9   0.3    1.6  1  Antimicrobial_4  Ant antimicrobial peptide


Domain annotation for each model (and alignments):
>> Antimicrobial_4  Ant antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   2.1e-05      0.38      10      19 ..       6      15 ..       5      16 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.1e-05
  Antimicrobial_4 10 KLlPsvvglf 19
                     KL+Psvv+ f
       CDO70875.1  6 KLVPSVVSAF 15
                     9*******88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 726.02
//
Query:       CDO70876.1  [L=236]
Description: hypothetical protein BN946_scf184804.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.1   0.0      0.035   13.4   0.0    1.5  2  ART       NAD:arginine ADP-ribosyltransferase


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.29   5.2e+03      35      49 ..      28      42 ..      19      59 .. 0.67
   2 ?   13.4   0.0   1.9e-06     0.035      79     132 ..     124     173 ..     106     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.29
         ART 35 qalaesweqakkkwk 49
                + ++++w qa+ + +
  CDO70876.1 28 ELYEDKWDQARFRAA 42
                667788888876665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.9e-06
         ART  79 yrelneavreaGrsreeylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvkg 132
                 ++++++  r+a rs +   + f+  a+hf+L r+ ql r     c +v+R   +
  CDO70876.1 124 MTSIDDYSRTADRSSAILNQRFSGCAVHFLLLRGFQLVRP----CLAVFRDLSA 173
                 67888999*****************************998....******8774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1656.75
//
Query:       CDO70877.1  [L=198]
Description: hypothetical protein BN946_scf184804.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1339.55
//
Query:       CDO70878.1  [L=813]
Description: hypothetical protein BN946_scf184804.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-55  186.0   2.5    5.5e-55  184.9   2.5    1.6  1  Urease_alpha  Urease alpha-subunit, N-terminal domain
      1e-51  176.3   1.2    2.9e-49  168.2   0.1    2.3  2  Amidohydro_1  Amidohydrolase family
    1.7e-42  143.4   0.1    4.7e-42  142.0   0.1    1.8  1  Urease_beta   Urease beta subunit
      3e-40  136.5   0.2    8.2e-40  135.1   0.2    1.8  1  Urease_gamma  Urease, gamma subunit
    0.00078   19.0   1.1     0.0064   16.0   0.0    2.3  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   2.5   1.5e-58   5.5e-55       2     121 .]     269     388 ..     268     388 .. 0.99

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 1.5e-58
  Urease_alpha   2 klsreeyaelyGptvgDrvrLadtellievekDltvyGeevkfGggkviRdgmgqssaakeeealDlvitnavilDatgivkadigikdgrivaiGk 98 
                   ++ r++y++++GptvgDrvrL+dt+l+ieve+D tvyG+evkfGggk++R+gmgq++++ ++e+lDlvitna+i+D++gi+kadigik+g i++iGk
    CDO70878.1 269 DIGRDAYVAMFGPTVGDRVRLGDTALWIEVERDETVYGDEVKFGGGKTVREGMGQATNRPASETLDLVITNALIIDWSGIYKADIGIKNGVIAGIGK 365
                   5889********************************************************************************************* PP

  Urease_alpha  99 agnpdvmdgvdeelvigastevi 121
                   agnpdvm gvd+ lv+g++tevi
    CDO70878.1 366 AGNPDVMAGVDPRLVVGSATEVI 388
                   *********************98 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2   0.00099       3.5       1      38 [.     394     417 ..     394     422 .. 0.89
   2 !  168.2   0.1   8.2e-53   2.9e-49      73     339 ..     431     699 ..     421     707 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00099
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaeale 38 
                   iv++G +DaHvH+              ++p+++ eal+
    CDO70878.1 394 IVTAGAVDAHVHY--------------ICPQQVTEALA 417
                   79***********..............99999999876 PP

  == domain 2  score: 168.2 bits;  conditional E-value: 8.2e-53
                   SSSEEEEEEESSEGGSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHT CS
  Amidohydro_1  73 lplglrilggkvsldrgsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafg 167
                   lp+++ i g+      g+++ + a+   +kaga             ++l+ he+++ +++++  al++ + +d++v iH+  l+++g+ve ++aafg
    CDO70878.1 431 LPMNFAITGK------GNDSGPNALEDIVKAGA-------------AGLKLHEDWGSTPSAIVTALDVGDMYDVQVNIHTdtLNESGFVESTIAAFG 508
                   5778888888......88888888888888888.............9************************************************** PP

                   TTEEEETTTTSTCCHHTTTHCCEEEHCTCEEE...HH...HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEEC CS
  Amidohydro_1 168 etiehgthlevaeslglldeiklilahgvhlt...pt...eaellkerlkeagva.........hcpfsnsilrsgrealrkalde.GvkvglgtDg 248
                   ++++h++h+e+a++++++d+i ++ +++v+++   pt   + ++l+e+l++ +v+         +++f++s++r ++ a++++l++ G+++++++D+
    CDO70878.1 509 NRTIHTYHTEGAGGGHAPDIIVVCGQDNVLPSstnPTrpyTGNTLDEHLDMLMVChhldksipeDLAFAESRIRAETVAAEDVLHDtGAISMISSDS 605
                   ********************************766559999******************************************************** PP

                   TTSSCCGGHHHH...HHHHHHHHHHCCTT....TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEE CS
  Amidohydro_1 249 aasgnslnllee...lrlalklqrgllye....deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvi 338
                   +a+g++++++ +   ++ ++   rg l      +++++ ++k++++++Tin+A+ +g+++ vG ++vG  ADlv++    +++ +g k+ +  k+++
    CDO70878.1 606 QAMGRVGEVVSRtwrTASKMREFRGPLTAlgdsEGHDNGRVKRYISKYTINPAITHGISHLVGQVAVGTLADLVLW----KPENFGAKPEMVLKSGV 698
                   *******9999998855555555566665677899*****************************************....********999998888 PP

                   E CS
  Amidohydro_1 339 v 339
                   +
    CDO70878.1 699 I 699
                   7 PP

>> Urease_beta  Urease beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.1   1.3e-45   4.7e-42       1      97 [.     138     234 ..     138     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 1.3e-45
                  TT-EE-SSSEEETTTT---EEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-STTSS--E CS
  Urease_beta   1 pgeiiteegeielnagretiklkvantgdrpiqvgshyhflevnkaLefdRekalGlrldipagtavrfepgeekevelvelaGerkvyGlnglvng 97 
                  pg+i+t++++i++n+gre+++l+v+n+gdrpiq+gshyhf+e+n+aL fdR +a+G+rldipagtavrfepg++k+v+l+++aG++ ++G n+l++g
   CDO70878.1 138 PGAIVTKQDRIRINQGRERVRLRVTNNGDRPIQIGSHYHFVETNPALAFDRGRAYGKRLDIPAGTAVRFEPGDSKTVTLCTIAGAKIITGGNRLATG 234
                  89******************************************************************************************99876 PP

>> Urease_gamma  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.2   2.3e-43   8.2e-40       1      99 []       1     100 [.       1     100 [. 0.99

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 2.3e-43
                   ----HHHHHHHHHHHHHHHHHHHHHTT--B-HHHHHHHHHHHHHHHHHCT.S-HHHHHHHHCCSS-CCCB-TTCHHH-SEEEEEEEETTEEEEEEEE CS
  Urease_gamma   1 mkLtpreldkLllfaaaelAqkrlarGlkLnhpEavaliasevlelardg.ksvaelmelgkklLtredvldgvaelleevqveatfpdgtkLvtvh 96 
                   m+++pre+ kLll++++ lAqkrlarGl+Ln++Ea+alias+++e++rdg ++vaelm++gk +L+r++vl+gv++ll+e+qve+tf+dg  Lvtvh
    CDO70878.1   1 MRISPREEAKLLLHQTGFLAQKRLARGLQLNQTEAIALIASQLQERIRDGkHTVAELMQHGKMMLGRRHVLPGVSALLHEIQVEGTFHDGVFLVTVH 97 
                   99************************************************999******************************************** PP

                   S-S CS
  Urease_gamma  97 dpi 99 
                   dpi
    CDO70878.1  98 DPI 100
                   **9 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.058   2.1e+02       6      22 ..     391     407 ..     386     420 .. 0.79
   2 !   16.0   0.0   1.8e-06    0.0064     411     470 ..     647     698 ..     580     700 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.058
  Amidohydro_3   6 kGrlvlPGFvDsHtHla 22 
                   + ++v++G vD+H H +
    CDO70878.1 391 EKLIVTAGAVDAHVHYI 407
                   5678***********65 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.8e-06
  Amidohydro_3 411 eealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGr 470
                      +  yT +pA + g ++  G+++vG  ADlv++  + + ++p+        +++++G+
    CDO70878.1 647 KRYISKYTINPAITHGISHLVGQVAVGTLADLVLWKPENFGAKPE--------MVLKSGV 698
                   556889*************99**************8666666654........6666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5626.15
//
Query:       CDO70879.1  [L=288]
Description: hypothetical protein BN946_scf184804.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-62  211.4   8.2    2.3e-61  207.2   8.2    2.5  1  Thaumatin  Thaumatin family


Domain annotation for each model (and alignments):
>> Thaumatin  Thaumatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2   8.2   1.3e-65   2.3e-61       7     214 .]      52     288 .]      26     288 .] 0.86

  Alignments for each domain:
  == domain 1  score: 207.2 bits;  conditional E-value: 1.3e-65
                 EEEE.EETTT.........EEEEE-TT-EEEEE--.-..SEEEEEEECEEE-..TTSE....ECCS--TTBSS-S..S-.--SS--EEEEEECECCC.. CS
   Thaumatin   7 vwpailtnag..seale.ktgfelepgesrtlsvpakw.sgriwgRtgCsfd..ssgs....CatGdcggkleCk..gaggappatlaeftleekkekk 93 
                 v pai+t+ +  +++++  tg+e ++++s+++svp++w +griwgR++C+f+  +       C+ G+c+g l C+  +++g+ppat+aeftl  +  ++
  CDO70879.1  52 VRPAIFTDLNvgTATPSqPTGWEQAAYQSVSFSVPDNWqAGRIWGRRDCDFStgT--PgpnqCLDGGCNGGLLCDphTGTGVPPATVAEFTLGIN--GA 146
                 6789988885554455549*******************99************542..23356*************8888999**********874..56 PP

                 EEEEEEE-TT-BSS-EEEEE-S.----EE-S-CCCC--GGGE........ETTEE--HHHHH....--HHHH-SCGGG...G--..--HHHHHH..... CS
   Thaumatin  94 qdfYdvslvdGynlpvsitpae.ckvaecaadlnkaCpaelkvkrkdsegkvvaCksaCeaf....nsdeyCCtgeyatpetCk..pteysklf..... 180
                  d+YdvslvdGynlp++i +++ c+va+c +dl ++Cp++lk ++ ds+g +v+CksaC+a     +++ +CCtg+++tp+tC+  +++y+++f     
  CDO70879.1 147 PDNYDVSLVDGYNLPLRIDNNKgCHVADCPVDLGPNCPDPLK-GPFDSTGFPVGCKSACAAGlgdpTNNPNCCTGTHNTPATCPpsGVQYYSYFsaypl 244
                 9******************6556*******************.99****************9876444459*************776799999833333 PP

                 .......HHH-TTSBSSTT-HCCC-..EEE..ETT--EEEEE-- CS
   Thaumatin 181 .......kkaCpdaysYayddasst..ftc.skkkadytvtfcp 214
                        +++Cp++y+Yayd++s t  +tc s+ +adyt+tfcp
  CDO70879.1 245 pertafgEDNCPNSYAYAYDESSGTalWTCdSSLAADYTITFCP 288
                 3333333479************99667***99999********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1930.81
//
Query:       CDO70880.1  [L=357]
Description: hypothetical protein BN946_scf184804.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2448.51
//
Query:       CDO70881.1  [L=493]
Description: hypothetical protein BN946_scf184804.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-40  139.2  52.2    1.9e-32  112.6  25.2    1.9  2  MFS_1     Major Facilitator Superfamily
      6e-08   32.0  17.3      8e-07   28.3   1.4    2.3  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.29    9.5   8.7      0.068   11.6   0.4    2.2  2  TRI12     Fungal trichothecene efflux pump (TRI12)
       0.63    8.5  22.1      0.028   13.0  10.2    3.4  3  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6  25.2   4.3e-36   1.9e-32       2     353 .]      39     439 ..      38     439 .. 0.83
   2 !   40.7  19.0     3e-14   1.4e-10       3     172 ..     291     479 ..     289     492 .. 0.81

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 4.3e-36
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse.......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrv 93 
                 l++++   l++ +++p++p  l ++ gi++         +gl+ +++++++av++l ++r+sd +Gr++v+++gl +++++++++ ++ ++w  +++r 
  CDO70881.1  39 LILQLAEPLTSQVIYPFAP-ELIRNIGITHGDetrvgyyVGLMQSIFFATQAVTVLHWSRISDHIGRKPVIMTGLMGLSISMYCFGLSRTFWGAVISRS 136
                 7888899999*********.7779999999999999999******************************************77777878888******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.............Wravfyilaivsllafv.lfllllpeeppe 178
                 l G+   + + ++ +++a+++  ++ ++a++++ +++s Ga lgp++gg l+  +               +  f+ +ai + ++++ +f+ l++ +++ 
  CDO70881.1 137 LNGAL-NGNIGVMKSMLAEITDSTNIAQAYAFMPIAWSTGATLGPIIGGSLSRPAErfpsvfgnfeffkTHPYFLPCAIPATFSAIaCFVTLFFLKETV 234
                 *****.69999**************************************99955557778888888887444466666666666666888999888888 PP

       MFS_1 179 rkrkspkeee.........kgtgpaplvp.........awkallkdpvlwillialllfffgfsg.......lltllplylqevlglsglllaglllal 252
                 r ++s ++++         +++++ p +          +++ ll ++v+  + ++ + f +++ +       +++ +p+ +   lgl    ++g++l+l
  CDO70881.1 235 RNPVSIRQLLqlspkvaaaERDAQLPKSLdvdddsrplPLRRLLVPRVI--IAAGNYAFLAIVDItlraiqpVFYSTPI-ALGGLGLE-PQTIGMILSL 329
                 8888888887788888888333333333355667777779999999988..3333333333333345666668888888.6*******.4566666666 PP

       MFS_1 253 lalvgail.allagrlsdrlgrrrrlllallllllaalglallavt......ssavllll.....vlvliGfglgfvfpsllalasdlappeeagtasg 339
                 +++++  +  +l+gr++dr+g +r  l +++++l +++++ +++        ++av++l+     ++++i f +g+vf+ ++a   + a     g+++g
  CDO70881.1 330 YGVANGLMqIFLFGRIHDRFGTKRVYLTGIASVLPVFALFPFINELarleglTTAVWALVlgqalLSIIINFSYGCVFIFITASSPNKA---SLGSVNG 425
                 66666666555***************************************************9988888**************999999...7****** PP

       MFS_1 340 lfntagslggalgp 353
                 l++++ s+++ +gp
  CDO70881.1 426 LAQMVVSIMRTIGP 439
                 ************98 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 3e-14
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll.f....a......sslwll 88 
                 ++a++ ++ r+i  ++++  +    lg+ p++ig++l+ly+++ ++++++l Gr+ drfG +rv+l+g+++ +   ++l+ f    a      + +w+l
  CDO70881.1 291 FLAIVDITLRAIQPVFYSTpIALGGLGLEPQTIGMILSLYGVANGLMQIFLfGRIHDRFGTKRVYLTGIASVLPV-FALFpFinelArlegltTAVWAL 388
                 6777788888887778877788999**************************************************.444445344425556667799** PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllll 172
                 +++ +l ++   +++  + ++i++ +p     g+++gl+++ +s+   +gp+ +  l  sl+         + f+  a+ +l++f +++  +
  CDO70881.1 389 VLGQALLSIIINFSYGCVFIFITASSPNkASLGSVNGLAQMVVSIMRTIGPATANSLF-SLSidtqhhyMNGYFVYYALSALVVFAFWIGTF 479
                 ****************************889************************999.555679999944445555555555444433333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   1.4   1.8e-10     8e-07      46     197 ..      75     236 ..      33     269 .. 0.87
   2 !    8.7   8.6   0.00016       0.7      50     192 ..     325     481 ..     292     488 .. 0.52

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.8e-10
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                  ++gl+ sif++ ++++ l  + ++d +GRk++++++ + ++i+  + +++    +++  +++R l G   G + v+ +m+ +Ei+  +   +   +  
  CDO70881.1  75 YYVGLMQSIFFATQAVTVLHWSRISDHIGRKPVIMTGLMGLSISMYCFGLSR---TFWGAVISRSLNGALNGNIGVMKSML-AEITDSTNIAQAYAFMP 169
                 6789************************************************...9******************9999996.68886666666677888 PP

                 HHHHHHHHHHHHHHHHHHTSS-.............TTHHHHHHHCCHHH.HHHHHHHGGGS---HHH CS
    Sugar_tr 145 laitfGilvaaifglglnktsn.............adgwrillglqlvp.allllilllflPESPry 197
                  a+++G  ++ i+g  l++  +             +  + +++++ + + a++ ++ l+fl E+ r 
  CDO70881.1 170 IAWSTGATLGPIIGGSLSRPAErfpsvfgnfeffkTHPYFLPCAIPATFsAIACFVTLFFLKETVRN 236
                 9**************9988888899999999999988999999998765166677778999999885 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00016
                 HHHHTHHHH.HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.......SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCH.HHH CS
    Sugar_tr  50 livsiflvG.aiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.......nsvevlivgRvlvGigvGlasvlvPmyisEiApkklR.gal 139
                 +i+s++ v  +++  +++g + drfG k ++l++++ ++   +l  ++++        ++v++l++g+ l+ i + + +++v ++i   +p k   g +
  CDO70881.1 325 MILSLYGVAnGLMQIFLFGRIHDRFGTKRVYLTGIASVLPVFALFPFINELarlegltTAVWALVLGQALLSIIINFSYGCVFIFITASSPNKASlGSV 423
                 444444333134444566666666666666666443332222222222222344466666666666666666666666666666666666666666666 PP

                 HHHHHHHH....HHHHHHHHHHHHHHHTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 140 vslyqlai....tfGilvaaifglglnktsn..adgwrillglqlvpallllilllflP 192
                  +l q+ +    t+G   a  +     +t+    +g+ +  +l+++   + + +++flP
  CDO70881.1 424 NGLAQMVVsimrTIGPATANSLFSLSIDTQHhyMNGYFVYYALSALVV-FAFWIGTFLP 481
                 666665541111333333333332222222223333333333333332.3333334444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   1.5e-05     0.068      81     157 ..      78     154 ..      57     190 .. 0.75
   2 ?    1.5   2.7     0.017        78      53     210 ..     295     471 ..     263     484 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgc.tatkfntllaamtllgvaagpagasplfvge 157
                 +l+ +++   qav++l   r++d +gr+p vi+t ++gl  ++     +  f   + + +l g   g  g    ++ e
  CDO70881.1  78 GLMQSIFFATQAVTVLHWSRISDHIGRKP-VIMTGLMGLSISMYCFgLSRTFWGAVISRSLNGALNGNIGVMKSMLAE 154
                 688889999********************.789999999766543313445666666666667666666666665555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.017
       TRI12  53 vvatyfvlqasasalpnilqdvgqs.ensslfstlwttgqa.vsilvmgrltdrfgrrpfvilthilgl............vgaivgctatkfntllaa 137
                 v  t   +q    + p  l  +g   +  +++ +l+ + +  + i+++gr+ drfg + +  lt i  +            +  + g t++ +  +l  
  CDO70881.1 295 VDITLRAIQPVFYSTPIALGGLGLEpQTIGMILSLYGVANGlMQIFLFGRIHDRFGTKRV-YLTGIASVlpvfalfpfineLARLEGLTTAVWALVLGQ 392
                 44556666666666677777777531344566666666554268999*********7653.33333222010000000000222334444444333333 PP

       TRI12 138 mtllgvaagpagasplfvgelmsnktkf.....lgllivsip.vvvtsglspylgqrlaiqgswrwifyiyiitsaiav 210
                   l  +     g+  +f+     nk+ +     l  ++vsi  ++  ++++  +   +  q  +   +++y  +sa+ v
  CDO70881.1 393 ALLSIIINFSYGCVFIFITASSPNKASLgsvngLAQMVVSIMrTIGPATANSLFSLSIDTQHHYMNGYFVYYALSALVV 471
                 3333333445566667777766666654111112223333321233333333444444444444445666666666665 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.6     0.026   1.2e+02     266     315 ..      82     129 ..      74     162 .. 0.64
   2 ?   -0.8   0.1     0.093   4.2e+02      66      91 ..     204     229 ..     204     235 .. 0.85
   3 ?   13.0  10.2   6.1e-06     0.028      12     196 ..     295     481 ..     284     493 .] 0.75

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.026
       MFS_2 266 lvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnll 315
                  ++++ ++++++ w+++  ++g+k +++ g+ + +++++ ++ l  +  +
  CDO70881.1  82 SIFFATQAVTVLHWSRISDHIGRKPVIMTGL-MGLSISMYCFGL-SRTFW 129
                 5678889999************998888775.444444444544.34444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.093
       MFS_2  66 rrrPwlllsaiilavsiillftppel 91 
                 + +P+ l +ai++++s i+ f ++++
  CDO70881.1 204 KTHPYFLPCAIPATFSAIACFVTLFF 229
                 56899999999999999999998875 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 6.1e-06
       MFS_2  12 lsvllatylliFytdvl.....glsaalvglvllvarlvDaitD.pivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqs.....akfiw 99 
                 ++ +l++   +Fy+  +     gl+++ +g++l ++ + + ++  +++G + d+  t     r +l   a +l v+ ++ f++     +     ++++w
  CDO70881.1 295 VDITLRAIQPVFYSTPIalgglGLEPQTIGMILSLYGVANGLMQiFLFGRIHDRFGT----KRVYLTGIASVLPVFALFPFINEL---ArleglTTAVW 386
                 55555555566776665577779**********999999999983467888887777....454666666666666666666654...23457888888 PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtker 196
                 +lv+  +  +l   ++ +y+    ++t+ +  + sl sv  +++++ +++ +i + +    ++   ++++ y+   +++ +L++l+v++ ++gt   
  CDO70881.1 387 ALVLGQA--LLSIIINFSYGCVFIFITASSPNKASLGSVNGLAQMVVSIMRTIGPATANSLFSLSIDTQHHYMNGYFVYYALSALVVFAFWIGTFLP 481
                 8776544..6666677788888999999999999999999999999999999999999888887779999999999999999999999999988544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3529.11
//
Query:       CDO70882.1  [L=336]
Description: hypothetical protein BN946_scf184804.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2268.70
//
Query:       CDO70883.1  [L=83]
Description: hypothetical protein BN946_scf184804.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-07   29.3   0.0    9.5e-07   28.8   0.0    1.2  1  BBE       Berberine and berberine like


Domain annotation for each model (and alignments):
>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.3e-11   9.5e-07       1      40 [.      27      65 ..      27      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 5.3e-11
                --TTS--GGG-HHHHHHHHGGGHHHHHHHHHHH-TT--S- CS
         BBE  1 aYvNyrdldlgkewgerYFggNferLvkvKtkyDPdNvFr 40
                aY+N + l ++ + ++++Fg+ ++ L  +K+ yDP ++F 
  CDO70883.1 27 AYLNEASLYEP-NPQKAFFGSHYPELKAIKAIYDPLDLFI 65
                8**********.**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 625.42
//
Query:       CDO70884.1  [L=457]
Description: hypothetical protein BN946_scf184804.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-07   31.7   2.7    3.8e-06   26.7   0.0    2.8  3  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.1e-10   3.8e-06       7      59 ..     127     178 ..     121     185 .. 0.89
   2 !    4.9   0.0    0.0012        21     108     137 ..     185     214 ..     180     216 .. 0.89
   3 ?   -3.3   0.2      0.39     7e+03      95     107 ..     363     375 ..     356     377 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.1e-10
                    ESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEE CS
  FAD_binding_4   7 peseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrilei 59 
                    + ++ +v+aa+ +a++++l+++v ++G+++lg ++ +g +v+++++l++ ++i
     CDO70884.1 127 VLTVGDVQAAIIFAAKHNLRLVVKNTGHDFLGRSTGRGSFVIWTHHLKN-ITI 178
                    56889**************************99999********99*99.555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0012
                    -EETTEEGG--HHGTEEEEEEEETTSEEEE CS
  FAD_binding_4 108 agGygsekyGlirdnvlglevvladGevvr 137
                    ag++  e y + +dnv++  +v+++G  ++
     CDO70884.1 185 AGAPLTEEYDHGVDNVVEISLVTSTGAYLT 214
                    789999********************9877 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.39
                    TCGSBHHHTTTTT CS
  FAD_binding_4  95 gipgtvGGaiatn 107
                      +g+vGG+ia +
     CDO70884.1 363 SGSGGVGGNIALG 375
                    5578999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3579.10
//
Query:       CDO70885.1  [L=472]
Description: hypothetical protein BN946_scf184804.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-22   78.8   8.3    4.1e-22   78.8   8.3    4.4  4  SPT2        SPT2 chromatin protein


Domain annotation for each model (and alignments):
>> SPT2  SPT2 chromatin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -27.6  45.4         1   1.8e+04      47     108 ..      26      93 ..      14      95 .. 0.74
   2 ?   -0.5   0.1     0.097   1.7e+03      71      86 ..     124     139 ..     110     156 .. 0.56
   3 ?   -1.3   0.1      0.17     3e+03      28      54 ..     220     250 ..     187     263 .. 0.69
   4 !   78.8   8.3   2.3e-26   4.1e-22      36     111 .]     392     464 ..     359     464 .. 0.88

  Alignments for each domain:
  == domain 1  score: -27.6 bits;  conditional E-value: 1
        SPT2  47 ifnkdkk.kyesrddaesddddrdMEang.....aeieeEErrSariArkEDeeEeerekreeeekkk 108
                 + +++++  +++++++e++  +r++Ea+      +e+++EE+r +r A++ +++E e ++ree+++++
  CDO70885.1  26 LAERQRReAQRRKEQEEKERRERELEAKLrlkrlEEQKHEEERRKRQAEEREAKEREIQRREEQQREA 93 
                 445666655566667777777899***853333389************99999999998888887765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.097
        SPT2  71 EangaeieeEErrSar 86 
                 + +   + +EE+r +r
  CDO70885.1 124 DGGSFALTREEKRRRR 139
                 3334444444444443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.17
        SPT2  28 ddeeeeeerrr....yarseIwaifnkdkkk 54 
                 d+  ++ ++r+    ++  e +  f+k+kk+
  CDO70885.1 220 DEISRDMKQRKvldgDKAREFNDWFGKGKKE 250
                 3333333333345567777888888888883 PP

  == domain 4  score: 78.8 bits;  conditional E-value: 2.3e-26
        SPT2  36 rrryarseIwaifnkdkkkyesrddaesddddrdMEangaeieeEErrSariArkEDeeEeerekreeeekkkrkk 111
                 +r++ +seIw++f+kd+++y  ++d+ sdd+  dMEa+  ++e+EE rSariA+kEDe ++e+e+r+eeek++rkk
  CDO70885.1 392 SRNDISSEIWKLFGKDRSSYI-QRDVFSDDE--DMEADAFDVEREELRSARIAKKEDELAMEEERRHEEEKRRRKK 464
                 44589*************555.588888885..8****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2663  (0.14853); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                       197  (0.0109878); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.15u 0.41s 00:00:01.55 Elapsed: 00:00:00.53
# Mc/sec: 2667.83
//
Query:       CDO70886.1  [L=379]
Description: hypothetical protein BN946_scf184804.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00039   20.2   0.0    0.00088   19.0   0.0    1.7  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.9e-08   0.00088       1      68 [.     112     183 ..     112     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.9e-08
                 EEEESETTTSSHHHHHHHHHTTSCE...EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi...ksiklvrd.etgkskgfafVeFeskedAekAlealngkklggre 68 
                 l++g+L + +t+e+L+++    G     k+i+ +    +gkskg+a+Ve +s+e+A+  ++ +++  +++r+
  CDO70886.1 112 LYIGDLQWWTTDEDLRKVALSLGVNidhKDITFSEHkVNGKSKGIAYVECHSPENATILKNWFDNNDFQNRR 183
                 8********************996434488888888*********************999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2599.16
//
Query:       CDO70887.1  [L=555]
Description: hypothetical protein BN946_scf184804.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-33  114.8   0.6    5.4e-33  114.3   0.6    1.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    2.8e-16   59.5   1.4    3.9e-16   59.0   0.4    1.9  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    9.3e-13   48.8   0.0    1.9e-12   47.9   0.0    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    6.9e-12   45.3   0.0    1.8e-11   44.0   0.0    1.7  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
    2.9e-07   30.8   0.1    5.4e-07   29.9   0.1    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.6   1.5e-36   5.4e-33       2     147 ..     389     543 ..     388     546 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 1.5e-36
                    BHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------......HHHHHHH CS
  Acyl-CoA_dh_1   2 kGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd......raeasma 91 
                     G+ v+++++nheR+a++++ ++ +r ++ee+l+++++rkafgkpl ++ ++r kla+m a++ea + +++++++++++++ +         ++++
     CDO70887.1 389 GGVFVILSNFNHERWAMCCGGARNMRFIVEECLKWVNQRKAFGKPLHSQAVIRSKLADMIAKTEACQHWLENITYQMQHMDYKqqaqrlAGPIALL 484
                    68899*************************************************************************99999999999999**** PP

                    HHHHHHHHHHHHHHHHHHHGGGTTS.GGGH..HHHHHHHTHHHHHSSS-HHHHHHHHHH CS
  Acyl-CoA_dh_1  92 KlfaselaqevadlamqllGgaGyl.eeyp..verlyrdarvlrigeGtseiqrniiar 147
                    K+f ++ aq+va++a+q++Gg+G++ ++++  +e+++r +  + i++G+++++ ++  r
     CDO70887.1 485 KMFITRSAQDVARDAVQIFGGRGITkTGMGrhIEHYHRTVPFDAILGGAEDVLGDLGVR 543
                    ************************96666689*******************99877665 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.7   1.3e+04       4      15 ..      85      96 ..      83      97 .. 0.84
   2 !   59.0   0.4   1.1e-19   3.9e-16       1      97 []     286     376 ..     286     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.7
                   ---SS-SS-GGG CS
  Acyl-CoA_dh_M  4 lTEpqaGsdvas 15
                   lTE  aG d+++
     CDO70887.1 85 LTEDIAGQDATE 96
                   89******9985 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 1.1e-19
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    ++a++E  aGsdva+++t+a ++ dg+ +++nG+K witn++ +++++v ++     +++gl+++lv+r  +gv+ + i++++ +  + t++++fe
     CDO70887.1 286 SLAISEAFAGSDVAGLRTSAkKTPDGKFWIINGTKKWITNGTFSDYFTVGCK-----TDKGLTVILVER-GEGVETKSIKTSYSTA-AGTAYITFE 374
                    589*****************77777777************************.....479********5.789******8877655.679999999 PP

                    .. CS
  Acyl-CoA_dh_M  96 dv 97 
                    +v
     CDO70887.1 375 NV 376
                    87 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   5.2e-16   1.9e-12       1     113 []     156     282 ..     156     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 5.2e-16
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGH.HHHHHHHHHTTCTSTTS-..GGGTS--S..........-HHHHHHHHHHHHH.H-HHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefp.relwkklaelGllgitvp..eeygGagl..........dyleaaivaeelar.adaglalll 82 
                    te ++ +++++r+f++e l p a   +e+g+ p  ++++k+ae+G+l++t+   +   G+            d ++++i+a+e+ r  + g++ + 
     CDO70887.1 156 TESHRRFQRAARKFVDEILTPDAMAREEDGKRPsLSVIQKMAEAGILAMTMGpgKHLKGRKIfdgviepeefDRFHELILAQEMCRpNCRGYRDGQ 251
                    799********************99999997673568**************9888888877567778888889*************6666777799 PP

                    HHHHHTTHHHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  83 gvhsslvapailrfGteeqkrryLpklasge 113
                    + + +++ p++++fG +e ++r + +++sg+
     CDO70887.1 252 NSGATIGLPPVIHFGRPELRDRVVEEVLSGK 282
                    99999***********************995 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0     5e-15   1.8e-11       8      61 ..      53     107 ..      50     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 5e-15
                 TECTTEEEEEETTEEEECTTTCCCSTTCSHHHH..TTTTSBBHHHHHHTTGGCHHH CS
      Cyt-b5   8 hngkndlwvairgkVYDvskflskhpGgesail..kyaGkDateafksvvhsekda 61 
                 h +  ++w++++ kVYDv+kf + hpGg+ ++l  + aG+Date f    h+ +++
  CDO70887.1  53 HVKGTESWIIVDAKVYDVTKFKGLHPGGANVLLteDIAGQDATESFYGL-HRHEVL 107
                 666779*************************973369*********999.555543 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.5e-10   5.4e-07      14     112 ..     416     510 ..     404     517 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.5e-10
                    HHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG CS
  Acyl-CoA_dh_2  14 alaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavdalfeaaGgsa 109
                     ++e ++++++r+   +g++l  + ++  +la++ a+ +A +  le+ +++ +++ + +++ + ++   +++ +++ ++ a+++++++++++Gg++
     CDO70887.1 416 IVEECLKWVNQRKA--FGKPLHSQAVIRSKLADMIAKTEACQHWLENITYQ-MQHMDYKQQ-AQRLAGPIALLKMFITRSAQDVARDAVQIFGGRG 507
                    478999********..**********************************9.667787777.46667777777*********************** PP

                    GBT CS
  Acyl-CoA_dh_2 110 lrk 112
                    ++k
     CDO70887.1 508 ITK 510
                    987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 3476.49
//
Query:       CDO70888.1  [L=481]
Description: hypothetical protein BN946_scf184804.g20, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-05   23.5   0.0    8.7e-05   22.5   0.0    1.5  1  SPA       Stabilization of polarity axis


Domain annotation for each model (and alignments):
>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.9e-09   8.7e-05       3     106 ..     223     325 ..     221     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.9e-09
         SPA   3 sllkllekftpeiillinalltskriivlstkasadevsefvLalsnlispagdvlrgfknnsfPyvdlseldalekvpg......yIvGvtNPiFeeq 95 
                 ++l+ +e ++ +++ +++ +++ +++++++++  a   s +v  l  l  p      +f    +P+ +++++d+++ v        +++GvtN++Fe  
  CDO70888.1 223 PILTHFEAVLSHLWSIWECVVLCEPLLIFGHSPAA--TSIAVWWLRDLLRP-IPLAGDF----RPFFTIHDTDHTSLVNPrppqagLLLGVTNAFFERA 314
                 57888999999************************..55567788888888.4444445....99999999999998888889999************* PP

         SPA  96 eqlWDvlydld 106
                  ++W+++++l+
  CDO70888.1 315 CKHWPHVLSLG 325
                 *******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3556.52
//
Query:       CDO70889.1  [L=352]
Description: hypothetical protein BN946_scf184804.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-13   50.0   0.0    5.6e-13   48.7   0.0    1.7  1  TOM13     Outer membrane protein TOM13
  ------ inclusion threshold ------
      0.025   15.1   4.0      0.025   15.1   4.0    1.8  2  DUF3106   Protein of unknown function (DUF3106)
       0.18   10.5   1.0        0.3    9.7   1.0    1.3  1  MSP1_C    Merozoite surface protein 1 (MSP1) C-terminus
       0.76    8.7   6.3        1.6    7.6   6.3    1.5  1  DEC-1_N   DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> TOM13  Outer membrane protein TOM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.3e-16   5.6e-13      36      75 ..     288     327 ..     260     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.3e-16
       TOM13  36 tllsllrsaainlvLPFinGlmLGfGellAhEiafrlgWs 75 
                 + l l+ s ainl+LPF+nG+mLGfGe++A+++    gW+
  CDO70889.1 288 RALALFSSLAINLLLPFVNGVMLGFGEIFAKNVVRWIGWK 327
                 568899**************************98777774 PP

>> DUF3106  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   4.0   5.5e-06     0.025      21      66 ..      72     117 ..      58     128 .. 0.88
   2 ?   -3.4   0.0         3   1.4e+04      27      58 ..     201     207 ..     195     213 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.5e-06
     DUF3106  21 elspeqreklleiaerykkltpeeqkrlqermeewakLspeqreqa 66 
                 + +++ +e++ +  ++++k ++e++++++er ++w+++  ++re+ 
  CDO70889.1  72 STEDAWKEEYEAYVAEWRKRSAEQRQQAEERRAHWEAIRAKEREEG 117
                 567788999999*******************************985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3
     DUF3106  27 reklleiaerykkltpeeqkrlqermeewakL 58 
                 +ek+ +                         +
  CDO70889.1 201 QEKWDD-------------------------M 207
                 233322.........................2 PP

>> MSP1_C  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.0   6.7e-05       0.3     256     333 ..      11      85 ..       2     114 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.7e-05
      MSP1_C 256 ellPk.vstseaavttavtadaavpdatPeglsvrgagvsGavkeetpepvagsv.asgltelqvvvklqdydeeedkvv 333
                 +ll   v+  +a  t+   a+ + ++a+Pe+   ++ag s +++  + ep + +  a+g +e    +    ++ee+++ v
  CDO70889.1  11 DLLQAgVAQVSALQTAFSPAPLPRQSAAPEPAPQPVAG-SSSTPPPVAEPQSDASaATGEAESTEDA----WKEEYEAYV 85 
                 55555233344445555668999***************.5566666666655554489955544433....444554444 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.3   0.00036       1.6     111     148 ..      25      63 ..       2      78 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00036
     DEC-1_N 111 gllGaaapapalaaapppapapvp...ddpapap.aapqaaa 148
                 + +   ap+p  +aap pap pv+      +p p a pq+ a
  CDO70889.1  25 TAFS-PAPLPRQSAAPEPAPQPVAgssS--TPPPvAEPQSDA 63 
                 2222.49****************95433..444413454443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2456.10
//
Query:       CDO70890.1  [L=831]
Description: hypothetical protein BN946_scf184804.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-25   89.3   0.0    4.5e-25   88.0   0.0    1.7  1  Vps39_1   Vacuolar sorting protein 39 domain 1
    1.2e-12   47.9   1.0    2.5e-07   30.6   0.3    2.6  2  Clathrin  Region in Clathrin and VPS
    1.3e-09   38.4   0.3    2.9e-09   37.3   0.3    1.6  1  Vps39_2   Vacuolar sorting protein 39 domain 2
    0.00015   21.5   0.0    0.00028   20.6   0.0    1.3  1  CNH       CNH domain
     0.0041   17.8   1.0        7.9    7.6   0.0    4.6  5  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.071   11.9   0.2       0.11   11.3   0.2    1.2  1  Cas_Csm6  CRISPR-associated protein (Cas_Csm6)
        6.1    6.8  10.3         17    5.5   1.2    4.1  4  TPR_1     Tetratricopeptide repeat
        8.8    6.7  11.7         16    5.9   1.3    4.2  5  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0     2e-28   4.5e-25       1     107 [.     468     567 ..     468     568 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 2e-28
     Vps39_1   1 iDTaLlkvYlktkpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkeladedeedeedsslkgeketiiqylqklseedldl 99 
                 +DTaL+k Yl ++p l+gpL+r+  +C++++vee L +++ky+e+i lY+g+k+h +AL+Ll++l++     +e++ +++    i+ ylq l++e+ld 
  CDO70890.1 468 VDTALFKSYLLVRPGLLGPLCRV-GWCEVSEVEELLREREKYQEMIYLYNGRKMHDKALNLLRQLSE-----KETDVRDKLMP-IVTYLQRLGPEHLDQ 559
                 8**********************.9******************************************.....44444444444.6************** PP

     Vps39_1 100 ileyskwv 107
                 i+e+skwv
  CDO70890.1 560 IFEHSKWV 567
                 *******8 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     8e-06     0.018      72     111 ..     494     533 ..     460     547 .. 0.81
   2 !   30.6   0.3   1.1e-10   2.5e-07      32     125 ..     612     722 ..     594     727 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8e-06
                 -TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHC CS
    Clathrin  72 dlekvaklcekadlyeeavilykkinefkkaisllkklkd 111
                  + +v +l++++++y+e+++ly+  ++++ka++ll++l++
  CDO70890.1 494 EVSEVEELLREREKYQEMIYLYNGRKMHDKALNLLRQLSE 533
                 56788899*************************9988776 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.1e-10
                 CHHHCHTS--HHHHHHHHHHHHHT...................T-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSX.SSSSH CS
    Clathrin  32 kvlkedskenpalqtallelyaky...................ddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisl.lkklk 110
                 k +    + +++++++l+ely+++                   + +++l+ f++k+++y ++++  ++  +dl+e   il+ ++++++ a+++ + +l+
  CDO70890.1 612 KER---GEVSQEFHDRLAELYLRMtmaakkrgddgeyhhrnvkQAYEKLLHFIDKTEYYSADRLYARLPSEDLFEAKAILLGRLGRHDSALEVyAYRLQ 707
                 444...3456889999999999999999999999999999999669***********************************************99**** PP

                 CSCHHHHTTTTTXXS CS
    Clathrin 111 dfddaieyaakvsnp 125
                 df +a ey+++v +p
  CDO70890.1 708 DFAKAEEYCKRVYQP 722
                 *********998665 PP

>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.3   1.3e-12   2.9e-09       1      80 [.     755     831 .]     755     831 .] 0.95

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.3e-12
     Vps39_2   1 lelLskhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsveeellklrskkvvvteekv 80 
                 lel+s+h+ rldp+ +L+llP+ ++ ++++ fl ++lr+ +     ++vv++++ka+++++ ++l+ l+sk+v++t++++
  CDO70890.1 755 LELISRHSPRLDPVMTLQLLPPLVTAQEVRAFLLESLRAPV---FDTRVVRNIYKAREEQIARRLMVLQSKRVRITDSRM 831
                 799**********************************8776...5689****************************9986 PP

>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07   0.00028     193     244 ..      70     121 ..      64     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
         CNH 193 aviqisedefLlcydefavyvdlqGrrsrdseleWegkPesvaclepyllaf 244
                 +v+ ++e+e L+  d+ +++  ++G+ +r+ +++W++ P+++a+++py++ +
  CDO70890.1  70 CVVSLNENEALIAKDNNGFIIGREGKSARSENIDWPAPPDEIALVKPYVFSI 121
                 7999*********************************************865 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         8   1.8e+04      15      25 ..     271     281 ..     268     285 .. 0.80
   2 ?   -2.8   0.0       7.6   1.7e+04      16      37 ..     398     420 ..     397     423 .. 0.71
   3 ?    4.0   0.0     0.052   1.2e+02       5      32 ..     509     536 ..     505     542 .. 0.81
   4 ?    2.0   0.0      0.22     5e+02       8      24 ..     686     702 ..     680     703 .. 0.82
   5 !    7.6   0.0    0.0035       7.9      11      41 ..     703     731 ..     697     734 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8
      TPR_14  15 GdpdeAiallr 25 
                  ++deAi+++ 
  CDO70890.1 271 AKYDEAINAFL 281
                 6799***9986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.6
      TPR_14  16 dpdeAiallrrala.laPddaea 37 
                 ++ ++i++l r+l+ + P+ a a
  CDO70890.1 398 NFHRSIEVLMRYLSdRRPKIAGA 420
                 67888999999988346776655 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.052
      TPR_14   5 lalaeallalGdpdeAiallrralalaP 32 
                 +++  ++  +  +d+A++llr++ ++  
  CDO70890.1 509 QEMIYLYNGRKMHDKALNLLRQLSEKET 536
                 667778888899**********988765 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.22
      TPR_14   8 aeallalGdpdeAiall 24 
                 a +l +lG++d A++++
  CDO70890.1 686 AILLGRLGRHDSALEVY 702
                 677789********998 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0035
      TPR_14  11 llalGdpdeAiallrralalaPddaeawlll 41 
                  ++l+d+++A+++++r+ +  P++++a+ +l
  CDO70890.1 703 AYRLQDFAKAEEYCKRVYQ--PNSPTANVFL 731
                 479**************99..9999999877 PP

>> Cas_Csm6  CRISPR-associated protein (Cas_Csm6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.9e-05      0.11     121     232 ..     504     616 ..     489     663 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
    Cas_Csm6 121 kreqikklieaYd....YeaAleiaaslkseenekvlkLlelakarknldlsevnklarktaldllPvkesekkklfeYllalklklkreeladfvrri 215
                 +re+ ++ i  Y+     + Al+++ +l+++e++   kL+ + + +++l  ++ +++++++ +    v e++    fe   + ++ l ++++adf+ r+
  CDO70890.1 504 EREKYQEMIYLYNgrkmHDKALNLLRQLSEKETDVRDKLMPIVTYLQRLGPEHLDQIFEHSKW----VFEQDRDIAFEIFTSEEVELPKGQVADFLERL 598
                 566666666667644445679******9999999999*************************9....88999999************************ PP

    Cas_Csm6 216 tplvv.elleailkekck 232
                  p++  + +e ++ke+ +
  CDO70890.1 599 DPAICaRFIEYLIKERGE 616
                 **9862678888888654 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.048   1.1e+02      11      24 ..     267     280 ..     261     282 .. 0.82
   2 ?   -1.2   0.2      0.91     2e+03       9      24 ..     513     528 ..     508     530 .. 0.79
   3 ?    1.9   0.0     0.098   2.2e+02       7      24 ..     685     702 ..     684     703 .. 0.88
   4 ?    5.5   1.2    0.0075        17      12      27 ..     704     719 ..     701     721 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.048
                 HHHTT-HHHHHHHH CS
       TPR_1  11 yfklgkydeAleyy 24 
                  fk+ kydeA+ ++
  CDO70890.1 267 NFKNAKYDEAINAF 280
                 57888******998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.91
                 HHHHHTT-HHHHHHHH CS
       TPR_1   9 nayfklgkydeAleyy 24 
                 ++y   +++d+Al   
  CDO70890.1 513 YLYNGRKMHDKALNLL 528
                 57889999****9765 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.098
                 HHHHHHHTT-HHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyy 24 
                 ++ ++ +lg++d Ale y
  CDO70890.1 685 KAILLGRLGRHDSALEVY 702
                 5788999********977 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0075
                 HHTT-HHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekA 27 
                 ++l+++ +A+ey++++
  CDO70890.1 704 YRLQDFAKAEEYCKRV 719
                 789***********96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1      0.02        45       8      26 ..     264     282 ..     260     283 .. 0.85
   2 ?   -3.2   0.0       5.8   1.3e+04      16      26 ..     520     530 ..     513     533 .. 0.77
   3 ?   -3.5   0.0       7.2   1.6e+04       3      13 ..     621     631 ..     620     632 .. 0.81
   4 ?    1.7   0.0      0.16   3.6e+02       7      24 ..     685     702 ..     680     703 .. 0.85
   5 ?    5.9   1.3    0.0072        16      11      28 ..     703     720 ..     701     721 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.02
       TPR_2   8 GlayyklgdyeeAleafek 26 
                 G   +k+ +y+eA++af +
  CDO70890.1 264 GVDNFKNAKYDEAINAFLE 282
                 77789999*********87 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.8
       TPR_2  16 dyeeAleafek 26 
                  +++Al+++++
  CDO70890.1 520 MHDKALNLLRQ 530
                 56899988887 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.2
       TPR_2   3 alynlGlayyk 13 
                  + +l+++y++
  CDO70890.1 621 FHDRLAELYLR 631
                 68899999987 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.16
       TPR_2   7 lGlayyklgdyeeAleaf 24 
                  + ++ +lg+++ Ale +
  CDO70890.1 685 KAILLGRLGRHDSALEVY 702
                 6788899*********98 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0072
       TPR_2  11 yyklgdyeeAleafekAl 28 
                 +y+l+d+++A+e+++++ 
  CDO70890.1 703 AYRLQDFAKAEEYCKRVY 720
                 79************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 5633.88
//
Query:       CDO70891.1  [L=355]
Description: hypothetical protein BN946_scf184804.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2394.87
//
Query:       CDO70892.1  [L=729]
Description: hypothetical protein BN946_scf184804.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-20   71.8   1.3      2e-06   28.3   0.0    4.5  4  Ank_2     Ankyrin repeats (3 copies)
    7.4e-19   67.9   7.4    4.7e-05   23.9   0.1    6.1  6  Ank_4     Ankyrin repeats (many copies)
    2.6e-18   65.8  10.2    2.4e-07   30.9   0.0    5.7  5  Ank_5     Ankyrin repeats (many copies)
    3.3e-12   46.3  14.2       0.45   11.1   0.0    8.1  8  Ank       Ankyrin repeat
    1.1e-10   40.7   4.4       0.57   10.9   0.0    6.9  6  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.2e-07    0.0015       2      74 ..      21     115 ..      20     119 .. 0.74
   2 !   28.3   0.0   5.7e-10     2e-06      11      83 .]      72     160 ..      67     160 .. 0.79
   3 !   13.7   0.1     2e-05     0.071      29      78 ..     239     300 ..     224     303 .. 0.68
   4 !   22.9   0.1   2.6e-08   9.4e-05       4      74 ..     282     373 ..     281     381 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.2e-07
       Ank_2   2 hlAakngnlelvklLl.egadpn..k..ngktaLhyAakn........gnleivklLleh.......ad..ndgrtpLhyAarsghleivklLle 74 
                 + Aa   +l++v+  l +gad+n  +  +g ta+ +A+ +        + +e++++L+         ++    g tpL +Aa+ + ++++++Ll+
  CDO70892.1  21 IDAAARADLDAVRSALaSGADANavDdaTGYTAVTCAIAGdrcgrfsvDRVEVLRTLIGSdttslyaLNapARGVTPLGLAAWLNLPDVIRVLLD 115
                 5677776689*****99******87358*********997444333222335678888534556666447777*********99**********5 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 5.7e-10
       Ank_2  11 elvklLlegadpn.....k...ngktaLhyAakngnleivklLleh.........adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 e+++ L+ g+d       +    g t+L +Aa  +  ++++ Ll++         +d  g tpL+y+ar g  e++ lLl +g+ ++l+d
  CDO70892.1  72 EVLRTLI-GSDTTslyalNapaRGVTPLGLAAWLNLPDVIRVLLDEshglvavdgTDAVGVTPLMYSARDGAVETATLLLLRGSRPDLRD 160
                 6778888.655433333314579***********989*******955589886665588*********************8899998876 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2e-05
       Ank_2  29 aLhyAakngnleivklLle..h........adndgrtpLhyAars.g.hleivklLlekgad 78 
                  +h+A+ ++ l + + L +  h        +d+ g++pLhy+++  + + e+++ L+  gad
  CDO70892.1 239 LIHAACTGDVLSLHQHLYNaqHhipilvnrLDSRGWSPLHYCVCAeNpSMEVLDALFLAGAD 300
                 4556666554455677777442577775557799*********9942335888888766776 PP

  == domain 4  score: 22.9 bits;  conditional E-value: 2.6e-08
       Ank_2   4 AakngnlelvklLl.egadpn..k..ngktaLhyAakn.....gnlei.vklLleh..............adndgrtpLhyAarsghleivklLle 74 
                 +a+n + e+++ L  +gad +  +   + t+Lh+ a+n     g  e+ v+ L ++               d++g+t Lh+Aa+ g  + v++Ll 
  CDO70892.1 282 CAENPSMEVLDALFlAGADTSlyTttHHGTPLHCLARNaqdpvG--EAsVSHLHAFirhlvldlraplsaKDENGETCLHVAAERG--QSVEVLLA 373
                 67787779999997799998886256667****99999444442..3345555553333555566676655599*********998..57777773 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.3e-08   4.7e-05       5      48 ..      20      68 ..      17      78 .. 0.79
   2 !    5.4   0.0    0.0079        28      13      50 ..      70     109 ..      69     114 .. 0.78
   3 !    9.5   0.0   0.00042       1.5       3      45 ..     132     173 ..     130     175 .. 0.92
   4 !   12.4   0.2     5e-05      0.18      16      49 ..     251     287 ..     236     295 .. 0.66
   5 ?    0.6   0.0      0.25     9e+02      12      45 ..     286     319 ..     281     334 .. 0.79
   6 !   16.7   0.0   2.3e-06    0.0082      21      55 .]     341     375 ..     309     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
       Ank_4  5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn.....v 48
                L  aa+  +l++vr+ l++gad na+d++ G ta+ +A+ + +     v
  CDO70892.1 20 LIDAAARADLDAVRSALASGADANAVDDATGYTAVTCAIAGDRcgrfsV 68
                778999*********************************5544333553 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0079
       Ank_4  13 rlelvrlLlek.gadinaq.dnrsGetalhiAakrgnvei 50 
                 r+e++r L+ +   +++a  ++++G t+l  Aa+ + +++
  CDO70892.1  70 RVEVLRTLIGSdTTSLYALnAPARGVTPLGLAAWLNLPDV 109
                 899******8735889998889**********97555555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00042
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakr 45 
                 t+L y a +g +e++ lLl +g  ++ + ++ ++ta+++A+++
  CDO70892.1 132 TPLMYSARDGAVETATLLLLRGSRPDLR-DAHHRTAVQHALRH 173
                 77888889********************.***********986 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 5e-05
       Ank_4  16 lvrlLlekgad........inaqdnrsGetalhiAakrgnve 49 
                 l + L+    +        +n+  +++G+++lh+++  +n++
  CDO70892.1 251 LHQHLY----NaqhhipilVNRL-DSRGWSPLHYCVCAENPS 287
                 444444....22233447799*9.999********9777655 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.25
       Ank_4  12 grlelvrlLlekgad..inaqdnrsGetalhiAakr 45 
                   +e+++ L+  gad  ++ +    + t+lh+ a++
  CDO70892.1 286 PSMEVLDALFLAGADtsLYTT-TH-HGTPLHCLARN 319
                 678999999988988766666.55.88999997776 PP

  == domain 6  score: 16.7 bits;  conditional E-value: 2.3e-06
       Ank_4  21 lekgadinaqdnrsGetalhiAakrg.nveilklLl 55 
                 l+ +a + a  +++Get+lh Aa rg +ve+l  L+
  CDO70892.1 341 LDLRAPLSAK-DENGETCLHVAAERGqSVEVLLALI 375
                 4667778887.***************66***99987 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.4    0.0017       6.2      20      53 ..      20      54 ..      17      57 .. 0.92
   2 !    8.8   0.0   0.00056         2      15      45 ..      93     115 ..      87     128 .. 0.83
   3 !   16.1   0.1   2.9e-06      0.01       6      56 .]     120     170 ..     117     170 .. 0.89
   4 !    5.6   0.1    0.0057        20       3      22 ..     259     279 ..     258     315 .. 0.73
   5 !   30.9   0.0   6.8e-11   2.4e-07       9      56 .]     347     398 ..     340     398 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
       Ank_5 20 LhvAakygaadvvrlLlargadlnltdsrG.ltal 53
                L+ Aa +  +d vr  la gad+n+ d+   +ta+
  CDO70892.1 20 LIDAAARADLDAVRSALASGADANAVDDATgYTAV 54
                899************************99999997 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00056
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnlt 45 
                 +g+tpL +Aa+ + +dv+r+Ll         
  CDO70892.1  93 RGVTPLGLAAWLNLPDVIRVLL--------D 115
                 589*******************........3 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 2.9e-06
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                  ++v+ +d  g+tpL+++a+ ga + + lLl rg+ ++l+d++ +ta+++A
  CDO70892.1 120 LVAVDGTDAVGVTPLMYSARDGAVETATLLLLRGSRPDLRDAHHRTAVQHA 170
                 566666677799************************************998 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0057
       Ank_5   3 ehg.padvnrldgggntpLhv 22 
                 +h  p+ vnrld +g +pLh+
  CDO70892.1 259 QHHiPILVNRLDSRGWSPLHY 279
                 788899999999999999997 PP

  == domain 5  score: 30.9 bits;  conditional E-value: 6.8e-11
       Ank_5   9 vnrldgggntpLhvAak.ygaadvvrlLl...argadlnltdsrGltaldlA 56 
                 + ++d++g+t+LhvAa+ +++ +v++ L+    rg+ +++++srGlta ++A
  CDO70892.1 347 LSAKDENGETCLHVAAErGQSVEVLLALIscdTRGVVRKMKNSRGLTAAEVA 398
                 567899999********999999999999********************998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.61   2.2e+03      22      32 .]      36      47 ..      19      47 .. 0.72
   2 ?    1.8   0.0       0.1   3.7e+02       2      28 ..      50      83 ..      49      90 .. 0.72
   3 !   10.9   0.0   0.00014      0.49       2      24 ..      94     119 ..      93     127 .. 0.86
   4 !   11.1   0.0   0.00013      0.45       2      31 ..     130     160 ..     130     162 .. 0.82
   5 ?   -0.8   0.1       0.7   2.5e+03       6      19 ..     240     250 ..     216     256 .. 0.61
   6 !   10.7   0.0   0.00016      0.57       2      27 ..     273     301 ..     272     306 .. 0.77
   7 ?    2.8   0.1      0.05   1.8e+02       4      31 ..     311     351 ..     311     352 .. 0.58
   8 !   10.0   0.0   0.00027      0.97       1      22 [.     353     372 ..     353     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.61
                H.TTTSTTCBTT CS
         Ank 22 L.hGAnlnaldn 32
                L +GA+ na+d+
  CDO70892.1 36 LaSGADANAVDD 47
                548999999995 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
                SBBHHHHHH...HHTT.....HHHHHHHHTTTSTT CS
         Ank  2 GnTPLHlAa...tngk.....kriiklLLhGAnln 28
                G+T+  +A+   ++g      +++++ L+ G++ +
  CDO70892.1 50 GYTAVTCAIagdRCGRfsvdrVEVLRTLI-GSDTT 83
                99999999956533337777799999999.87754 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00014
                 SBBHHHHHHHHTTHHHHHHHH...TT CS
         Ank   2 GnTPLHlAatngkkriiklLL...hG 24 
                 G TPL lAa+ + +++i+ LL   hG
  CDO70892.1  94 GVTPLGLAAWLNLPDVIRVLLdesHG 119
                 99*******************76556 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00013
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G TPL++ a+ g ++ + lLL +G+ ++++d
  CDO70892.1 130 GVTPLMYSARDGAVETATLLLlRGSRPDLRD 160
                 89*****99766699***9998996677776 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.7
                 HHHHHHHTTHHHHH CS
         Ank   6 LHlAatngkkriik 19 
                  H A+t++   +++
  CDO70892.1 240 IHAACTGD---VLS 250
                 35577776...666 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00016
                 SBBHHHHHH..HHTTHHHHH.HHHTTTST CS
         Ank   2 GnTPLHlAa..tngkkriik.lLLhGAnl 27 
                 G++PLH+++   n + +++  l+L GA+ 
  CDO70892.1 273 GWSPLHYCVcaENPSMEVLDaLFLAGADT 301
                 9******7756666699**8466899996 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.05
                 BHHHHHHHHTT...........HHHHHHHH.T.TTSTTCBT CS
         Ank   4 TPLHlAatngk...........kriiklLL.h.GAnlnald 31 
                 TPLH+ a+n++           +  i+ L+ + +A l a+d
  CDO70892.1 311 TPLHCLARNAQdpvgeasvshlHAFIRHLVlDlRAPLSAKD 351
                 9***7676655555554444444566556555567667666 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 0.00027
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 +G T+LH+Aa +g  + ++ LL
  CDO70892.1 353 NGETCLHVAAERG--QSVEVLL 372
                 7*********778..5666665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1         1   3.7e+03       6      31 .]      21      44 ..      18      44 .. 0.73
   2 ?    3.7   0.0     0.036   1.3e+02       2      23 ..      94     115 ..      93     122 .. 0.90
   3 !    5.8   0.0    0.0074        27       2      25 ..     130     152 ..     129     159 .. 0.74
   4 !   10.9   0.0   0.00016      0.57       2      28 ..     273     300 ..     272     303 .. 0.77
   5 ?    3.9   0.1     0.031   1.1e+02       4      17 ..     311     324 ..     308     344 .. 0.74
   6 !   10.7   0.0   0.00019      0.68       1      23 [.     353     376 ..     353     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
       Ank_3  6 LhlAarsgnleivkfLlenkgadvna 31
                +  Aar++  + v+  l   gad na
  CDO70892.1 21 IDAAARADLDA-VRSALA-SGADANA 44
                55566666665.999999.8999995 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.036
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G tpL lAa  + +++++ Ll+
  CDO70892.1  94 GVTPLGLAAWLNLPDVIRVLLD 115
                 78*******************9 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0074
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 G tpL++ ar g +e + +Ll  +
  CDO70892.1 130 GVTPLMYSARDGAVETATLLLL-R 152
                 78************95555544.3 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00016
       Ank_3   2 GetpLhlAarsgnl..eivkfLlenkgad 28 
                 G++pLh+++ + n+  e++++L+   gad
  CDO70892.1 273 GWSPLHYCVCAENPsmEVLDALFL-AGAD 300
                 9*****666666662458****99.7888 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.031
       Ank_3   4 tpLhlAarsgnlei 17 
                 tpLh+ ar++  ++
  CDO70892.1 311 TPLHCLARNAQDPV 324
                 9********98764 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00019
       Ank_3   1 nGetpLhlAarsgnl.eivkfLle 23 
                 nGet Lh+Aa+ g   e++ +L+ 
  CDO70892.1 353 NGETCLHVAAERGQSvEVLLALIS 376
                 7**************556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5355.64
//
Query:       CDO70893.1  [L=82]
Description: hypothetical protein BN946_scf184829.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.53    9.4   6.3       0.54    9.4   6.3    1.0  1  Zip          ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.3     3e-05      0.54     110     170 ..      11      71 ..       1      80 [. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 3e-05
         Zip 110 tpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqa 170
                  +++ ++ + + +  +  +n+kve+ e k+++++ ++ d++++ee+ ++++e +e +++++
  CDO70893.1  11 KKNNPQDTEIKGKNREGRMNQKVEDPEAKNQVDRVDWVDPTNQEEEEEEEEEAEEGQTQEQ 71 
                 334444445566667778999*******************999888888877766555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1816  (0.101288); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 568.90
//
Query:       CDO70894.1  [L=305]
Description: hypothetical protein BN946_scf184829.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-07   29.6   0.0    0.00052   20.7   0.0    2.4  2  Methyltransf_25  Methyltransferase domain
     0.0016   18.3   0.0     0.0025   17.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.039   14.6   0.0       0.43   11.3   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
      0.048   13.4   0.0      0.091   12.5   0.0    1.4  1  AMP_N            Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.2e-07   0.00052       2      56 ..     101     158 ..     100     167 .. 0.88
   2 !    6.4   0.0    0.0032        14      56      95 ..     184     223 ..     178     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.2e-07
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH..TTTTEEEEESBCC CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraee..eglnvefvqgdae 56 
                      Ld+Gc  G++++++a+ + ++++++++D+ +e+++  ++ +++  e++ ++fv gd+ 
       CDO70894.1 101 LDVGCCFGDDVRKAAADGfPAKQIVATDLHPEYWNLGHKLFRStkESFPATFVPGDVF 158
                      9************99997679******************9998655559999999985 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0032
                      CGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25  56 edlpfedgsfDlvvssga.lhhlsdedlekalkeiarvLkp 95 
                      ++l+   g++ ++++s + +h++++e +e++ + +a++L p
       CDO70894.1 184 TSLNPLRGHVSVIHAS-SfFHLFDEETQERVARALASLLSP 223
                      567777889999***7.55999***************9987 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.6e-07    0.0025      11     123 ..      86     236 ..      76     288 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.6e-07
  Methyltransf_23  11 dklerllpklraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiae......................kakkaqkdqfdeqeaaep 79 
                      +k+++l+ k+rag+ +Ld+Gc  G   + +++ gf   ++++ Dl pe  ++                                          
       CDO70894.1  86 EKVLKLG-KERAGAILLDVGCCFGDDVRKAAADGFpakQIVATDLHPEYWNLGHklfrstkesfpatfvpgdvfdpA----------------- 161
                      5667776.59**********************999999*******99866665566665555554443333333330................. PP

  Methyltransf_23  80 qg.............................kfdlIvlrevlehvpd..ppellrqiatllkpg.Gylllseplas 123
                                                     +  +I+++ +++ ++    +++ r +a+ll+p  G ++l ++  +
       CDO70894.1 162 -HievippldatpselppdlssltslnplrgHVSVIHASSFFHLFDEetQERVARALASLLSPLpGSVILGTHSGN 236
                      .033333333344444444455555555555***************5559************96688888777544 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.5e-05      0.43       1      52 [.     101     157 ..     101     166 .. 0.82
   2 ?    0.8   0.0      0.18   8.1e+02      60      90 ..     191     223 ..     173     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.5e-05
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEEC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl..kvefvvada 52 
                      LdvGc+ G  +++ a  g   +++v++Dl +e  +l ++  +  ++    +fv +d+
       CDO70894.1 101 LDVGCCFGDDVRKAAADGfpaKQIVATDLHPEYWNLGHKLFRSTKEsfPATFVPGDV 157
                      8**************9999************99977766666665556566777776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.18
                      T-EEEEEEES-CCC-..CCHHHHHHHHHHHEEE CS
  Methyltransf_11  60 nsfDlvvssevlhhv..edpekalkeiaRvLkp 90 
                      + + ++ +s+++h +  e +e++ + +a +L p
       CDO70894.1 191 GHVSVIHASSFFHLFdeETQERVARALASLLSP 223
                      477889999999999877788888887777765 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05     0.091      64      93 ..     249     278 ..     234     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
                 EE...EEEE----HHHHHHH----HHHHHH CS
       AMP_N  64 kehkstLfvprkdpekelWdGarlgleeak 93 
                 k +++tLf++  ++ +e+WdG+  ++  +k
  CDO70894.1 249 KGDTFTLFCQSANALEEMWDGRVFKKGTVK 278
                 5679*****************987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2035.83
//
Query:       CDO70895.1  [L=306]
Description: hypothetical protein BN946_scf184829.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00027   21.6   0.0     0.0072   17.0   0.0    2.3  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     4e-07    0.0072       2      57 ..      92     150 ..      91     159 .. 0.86
   2 ?    2.0   0.0     0.019   3.5e+02      54      95 ..     173     214 ..     166     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4e-07
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH..TTTTEEEEESBCCG CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraee..eglnvefvqgdaed 57 
                      Ld+Gc  G++++++   + + ++v+g D+ +e+++  ++ ++   e + v fv gda d
       CDO70895.1  92 LDIGCCFGNDIRKAVFDGyPIGNVIGSDLHPEYWNLGHKLFKTtpETFPVPFVAGDAFD 150
                      9**********9998776569********************876555699999999855 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.019
                      BCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25  54 daedlpfedgsfDlvvssga.lhhlsdedlekalkeiarvLkp 95 
                       +++l+   g++ ++++s a +h++++ ++ k+ + +a +L p
       CDO70895.1 173 TLTSLNPLRGHVSAIHAS-AfFHLFDEGEQFKLAQALAGLLSP 214
                      5677888889999****6.65999**99999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2099.53
//
Query:       CDO70896.1  [L=213]
Description: hypothetical protein BN946_scf184829.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-06   27.1   0.1    1.2e-05   26.2   0.0    1.5  2  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.9e-10   1.2e-05       6      76 .]      17      94 ..       9      94 .. 0.89
   2 ?   -3.3   0.0         1   1.8e+04      56      63 ..     115     122 ..     107     127 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.9e-10
                EEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE..TS.CEEEEECE......BSS-BETTTEEEEEETTEEEEEEEB CS
          CS  6 yQtldeVvvtiyvkkvnikkkdvkvefkerslkvki..gk.eklliege......LfgpIdpeesswtieskkveitLkK 76
                +++++ +++t++++++  k + ++++++++s+++k   g+  k + e +      L+++++peess ++ s++  ++++K
  CDO70896.1 17 DEKKNVLYITVNLPDI--KPETLQYNLTPTSISFKAraGDaSKGIEERDyefafdLYEEVVPEESSQKLNSRSFNLLIRK 94
                578999*********9..*****************98766566655555**********************999999888 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1
                 BETTTEEE CS
          CS  56 Idpeessw 63 
                 I+++ s+w
  CDO70896.1 115 IKTDFSKW 122
                 66666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1522.60
//
Query:       CDO70897.1  [L=256]
Description: hypothetical protein BN946_scf184829.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-05   23.9  12.4    5.8e-05   23.2  12.4    1.3  1  BC10      Bladder cancer-related protein BC10


Domain annotation for each model (and alignments):
>> BC10  Bladder cancer-related protein BC10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  12.4   3.3e-09   5.8e-05       1      58 [.       1      52 [.       1      57 [. 0.91

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.3e-09
        BC10  1 MfcLrflipvlllpvrsnrslvnaselfivlfligftvelkPcvycsiilgllikaic 58
                M+c r+++p+lllp++      +a + +++l +++  ++ +Pc yc+ +l  +    c
  CDO70897.1  1 MWCTRWYLPLLLLPFP------IAPPFYLLLWIFSISLHARPCFYCMALLSTMYVSLC 52
                9***************......*************************99988776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 1995.80
//
Query:       CDO70898.1  [L=727]
Description: hypothetical protein BN946_scf184829.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-32  109.6   3.3    3.3e-06   27.7   0.1    7.6  8  WD40      WD domain, G-beta repeat
      1e-07   31.0   0.8      0.004   15.9   0.0    3.9  4  Nup160    Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.18   12.4   0.8       0.39   11.4   0.8    1.5  1  YabA      Initiation control protein YabA
        1.4    9.0   3.1        2.7    8.1   3.1    1.4  1  DUF1664   Protein of unknown function (DUF1664)
        1.9    9.0   8.7        3.9    8.0   8.7    1.4  1  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.1   1.1e+04       8      16 ..      55      66 ..      49      76 .. 0.74
   2 !   11.6   0.0   0.00011      0.41       5      38 .]     355     390 ..     351     390 .. 0.84
   3 !   21.4   0.1   9.4e-08   0.00034       2      38 .]     395     430 ..     394     430 .. 0.82
   4 !   20.1   0.0   2.4e-07   0.00087       1      38 []     485     521 ..     485     521 .. 0.81
   5 !   10.7   0.2   0.00022      0.79      24      38 .]     588     606 ..     571     606 .. 0.71
   6 !   27.7   0.1   9.3e-10   3.3e-06       1      38 []     610     646 ..     610     646 .. 0.86
   7 ?   -0.4   0.0       0.7   2.5e+03      10      38 .]     660     685 ..     653     685 .. 0.64
   8 !   10.0   0.0   0.00036       1.3       8      37 ..     697     725 ..     689     725 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                ESS.SS.E.EEE CS
        WD40  8 tGH.ss.v.tsl 16
                +GH s  + t+l
  CDO70898.1 55 RGHdSTkIlTDL 66
                699544766998 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00011
                 EEEESS.SSEEEEE.EETTSSEEEEEE.TTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla.fspdgawlasGs.dDgtvriWd 38 
                  +l+ H +++t+l+ + p+g++++ +s +D   r+Wd
  CDO70898.1 355 MSLESHtTPITALDfTEPYGTLVS-ASqEDSQPRVWD 390
                 57899*999*****8888888875.6647*******9 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 9.4e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++ l+GH + v ++  + + +  ++Gs+D+tvr+Wd
  CDO70898.1 395 EEIGRLRGHrGTVKCI--QVEDQICLTGSEDCTVRVWD 430
                 567889***8889999..555566679**********9 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 2.4e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g c+r+l+GH + vt++    +   l++G  D+t r Wd
  CDO70898.1 485 GACIRVLEGHtKAVTAM--YFEDECLVTGASDKTMRQWD 521
                 579*******999**99..334444679955*******9 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00022
                 E....EEEEETTSEEEEEE CS
        WD40  24 w....lasGsdDgtvriWd 38 
                 +    l+sGs Dg vr+Wd
  CDO70898.1 588 FwgygLVSGSGDGVVRMWD 606
                 16777899*88*******9 PP

  == domain 6  score: 27.7 bits;  conditional E-value: 9.3e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 gq+ rtl GH ++vt+l  + d   +++Gs D+++riWd
  CDO70898.1 610 GQPHRTLLGHtGPVTCL--QFDELHIVTGSLDKSIRIWD 646
                 688899****888****..44555599***********9 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.7
                 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 HssvtslafspdgawlasGsdDgtvriWd 38 
                 H  vt+l+f+  +   a+ +  + v+i++
  CDO70898.1 660 H-AVTALQFDTRKIVAAT-G-ENGVKIYN 685
                 6.7999966655555444.5.77777765 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 0.00036
                 ESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw....lasGsdDgtvriW 37 
                  GH  +v  l      ++    +asG++D  v+iW
  CDO70898.1 697 NGHtRPVERL------RYmdryMASGGRDSVVKIW 725
                 4886668888......6655558************ PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.058   2.1e+02     222     248 ..     406     432 ..     404     434 .. 0.89
   2 !   15.9   0.0   1.1e-06     0.004     226     259 ..     499     534 ..     479     547 .. 0.83
   3 ?    1.5   0.0     0.025        90     237     255 ..     597     615 ..     593     617 .. 0.85
   4 !    7.7   0.0   0.00032       1.2     227     259 ..     627     659 ..     622     695 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.058
                 ET.....TTTEEEEEETT-EEEEEETT CS
      Nup160 222 avavveigqtylfalsrdgkLrvWnll 248
                 +v+++++++++ ++ s d ++rvW+l+
  CDO70898.1 406 TVKCIQVEDQICLTGSEDCTVRVWDLR 432
                 5778999999999************96 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.1e-06
                 .....TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 226 vei..gqtylfalsrdgkLrvWnlltgkclatidll 259
                 + +  ++  l++  +d+++r W+l+tg+c++t+d+l
  CDO70898.1 499 TAMyfEDECLVTGASDKTMRQWDLNTGQCVMTMDIL 534
                 333557888999999*******************98 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.025
                 ETT-EEEEEETTTTEEEEE CS
      Nup160 237 srdgkLrvWnlltgkclat 255
                 s dg++r+W+ +tg++ +t
  CDO70898.1 597 SGDGVVRMWDMRTGQPHRT 615
                 569***********98765 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00032
                 ..TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 227 eigqtylfalsrdgkLrvWnlltgkclatidll 259
                 + ++ ++++ s+d+ +r+W+++tg + +t   +
  CDO70898.1 627 QFDELHIVTGSLDKSIRIWDVRTGGIFETLKYD 659
                 44778999****************999996665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   0.00011      0.39       6      63 ..     263     320 ..     258     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXX CS
        YabA   6 lfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekk 63 
                 + ++++e+++++++l +  ++l+++l +l ee+ eL  e e +rerle ee++++  +
  CDO70898.1 263 INNEIDEITRKIDALDAVRTKLEQDLLKLQEEELELDDELEGVRERLEMEEAASQPAR 320
                 567899*****************************************66655555444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.1   0.00074       2.7      48     111 ..     247     310 ..     239     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00074
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeave 111
                 +++e+ +e+++  +  ++++id++ +k+d+  ++ +++++++ +++e+  e+++++e v+e  e
  CDO70898.1 247 HEIERDKENIHVRRALINNEIDEITRKIDALDAVRTKLEQDLLKLQEEELELDDELEGVRERLE 310
                 67788889999999999***************************************99998765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.7    0.0011       3.9      44      93 ..     255     311 ..     225     322 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0011
      APG6_N  44 k.......qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelea 93 
                 +        ++e++e+ +++++l++ + +l++ L +l++e+ el++el+  +e le 
  CDO70898.1 255 NihvrralINNEIDEITRKIDALDAVRTKLEQDLLKLQEEELELDDELEGVRERLEM 311
                 144555556677888888888888888888888888888888888888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5222.23
//
Query:       CDO70899.1  [L=436]
Description: Glycosyltransferase Family 49 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-65  219.3   0.1      2e-63  214.7   0.1    2.2  1  Glyco_transf_49  Glycosyl-transferase for dystroglycan
  ------ inclusion threshold ------
      0.098   11.2   0.1       0.13   10.8   0.1    1.1  1  Glyco_transf_18  Glycosyltransferase family 18


Domain annotation for each model (and alignments):
>> Glyco_transf_49  Glycosyl-transferase for dystroglycan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   0.1   2.2e-67     2e-63       1     329 [.      55     392 ..      55     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 2.2e-67
  Glyco_transf_49   1 dvtlathatldrLdnleelverWrGpiSvAvfa.pgedaela........leaiekLrecye.selvrervtfhlvfpkerlpkkevtsesall 84 
                      dvt++t +t +r+  +++lver+rGpiSv++++    +++            a+++L+++y+ s+l++e v++hl+++  +++        al 
       CDO70899.1  55 DVTITTLVTNNRFRVFKQLVERYRGPISVTIHIpLPLHSSFSslkpdhpsRVALDNLHALYAsSPLFSEFVDVHLALSP-FTS--------AL- 138
                      7********************************434443333668888888999********9****************.322........22. PP

  Glyco_transf_49  85 kseedCseelleeleklrsseeenykaeellyPiNvlRNvARkaaqtefvlvlDidlvpseglvekfleflarekak......kk......... 163
                      +  +            + s+      ++e  +++Nv+RNvAR  a+tefv++lD+d++++++++ +++++l+++ +       ++         
       CDO70899.1 139 SAGR------------VPSP------EGEGGRQFNVWRNVARLLARTEFVMMLDVDFAVCTDWRGAVRDALRTAASLpnrhgaRTerrpfnsin 214
                      1111............1111......13899****************************************98666587665511555666565 PP

  Glyco_transf_49 164 .l......rkektvyvvpaFEv......dekarvPk.......tkkeLlkllkkg..earpFhqkvcpkchkptnyerWlkaskssdelklfvs 235
                       +      r+  +++vvpaFE+       +++ +P+         + Ll+l++ +   +  Fh+++ p +h++t+y+++++ ++ s     +++
       CDO70899.1 215 sAdvvkklREGTAALVVPAFEYvrqeegVDQHTFPAdkqarlfAARALLRLATISppVIASFHASWGP-GHNSTDYDKYYSIPPGS-----HTV 302
                      5155667899999*********76654422223477555555555679998887776899********.************77533.....389 PP

  Glyco_transf_49 236 ykvekyedawEPfyiaskkvPlyDerftgygfdkisqvyelcvagyeFkvLsnaFlvHkGikttkareaareeenkknrklfrkkfkkelkakY 329
                      ykv++y++a+EP++i+sk+v+++Derf gyg +k+++++e++++g++F+vLs++Fl+H+   ++ + e+ar+ee+k nrkl+  +fk+e + +Y
       CDO70899.1 303 YKVDQYQSAYEPYVITSKRVSWCDERFAGYGGNKAACLFEMYLSGVSFYVLSDHFLIHQ---SHRYDEEARREERKSNRKLYS-DFKEESCLRY 392
                      ***********************************************************...788******************.*****98887 PP

>> Glyco_transf_18  Glycosyltransferase family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.4e-05      0.13       3     107 ..     330     434 ..     328     436 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.4e-05
  Glyco_transf_18   3 aeygvdgseCsiliYLsevenfcPllekrnkkkaeakkkekkakirkslsellellksskeelkfikkrikr..lsekWleaarelkeklekkk 94 
                      a yg + + C + +YLs v+ +  + +   +++++  ++e + + rks ++l++ +k+++  l+++ +  ++  l++  +  are  +k+++  
       CDO70899.1 330 AGYGGNKAACLFEMYLSGVSFYVLSDHFLIHQSHRY-DEEARREERKSNRKLYSDFKEES-CLRYLYRYYREgiLQTDRAANAREECKKIKNIA 421
                      67888999**************99999999887655.5568888999**********987.666665544443388888888888888999999 PP

  Glyco_transf_18  95 rkqkkvlvylGll 107
                      ++  +v+++  +l
       CDO70899.1 422 KTVAQVMLMYPVL 434
                      9999988876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3288.10
//
Query:       CDO70900.1  [L=354]
Description: hypothetical protein BN946_scf184829.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-82  276.0   0.1    4.6e-82  275.9   0.1    1.0  1  ATP11     ATP11 protein
  ------ inclusion threshold ------
       0.26   11.5   1.7       0.43   10.8   1.7    1.3  1  DUF5333   Family of unknown function (DUF5333)
        1.1    9.3   3.8       0.49   10.4   0.2    2.1  2  RHH_1     Ribbon-helix-helix protein, copG family
        1.6    7.4   5.4        2.3    6.9   5.4    1.2  1  DUF4551   Protein of unknown function (DUF4551)


Domain annotation for each model (and alignments):
>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9   0.1     1e-85   4.6e-82       2     272 .]      39     347 ..      38     347 .. 0.90

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 1e-85
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---.......SS--HHHHS-HHHHTT. CS
       ATP11   2 vlekYreKLeqkakeeglesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekkesaakskkkskskspvkpLssildleklke. 99 
                 ++ekY+eKL++ka+e+g  s+e+L+ ++k++   +r ++   ++e+sks+ ++e++ + ++s+++++++s+ +   ++k++spvkpLssi++l+k+++ 
  CDO70900.1  39 YEEKYAEKLQRKAREQGK-SVEQLRMELKEQERLRRLQK--LKEESSKSTGASEPSRAYQASPDASSNTSQPTPPLSRKDSSPVKPLSSIFNLDKILQs 134
                 79***************9.*********99988888877..445555555555555555555555555555555589********************98 PP

                 .S-HHHHHHHHHHHTTT-SS.....EEEEEEETTTHHHHHHHHHH--EEEEEEE-----....--..-EEEEEEEEEE..EET................ CS
       ATP11 100 .lpakeiealWrarhaskee.....slcAvipaetYekmlatarkypqFvlPlpreeqe....ekeegaElhflqwafhepae................ 172
                  +++++i+ lWra+h s+++     +lcA++p+etY+kml+ a kyp Fv+P+pr++++    +k+ ++E+++++w fh p +                
  CDO70900.1 135 pHTPEQISVLWRAYHESRSDgtgrgYLCASLPVETYQKMLDVASKYPRFVIPVPRDNAQlgdgSKQPAYEFYLMEWGFHGPPPepsrsddpfaqskpss 233
                 999***************9999999******************************99889**99999***********994445677888888888889 PP

                 ..TEEEEEEEETTTTTT-HHHHS-SEEEEEE-TTHHHH-EEEEEEEE-TTSS................--HHHHHHHHHHHHHHTTGGG--SHHHHHHH CS
       ATP11 173 ..ktstvlfTsLaeYklrgefAqphttlthytdLaeskglVLmrGevtedrg................lsveeAqlLvlalqrFYgaeaeekeeakere 253
                   +tst+lfT+L+eYk r +fA+p++++thy+dLa+++g+VL+rGe+t++++                ls+++AqlL++ +qrFY      +e ++er+
  CDO70900.1 234 npQTSTILFTPLQEYKQRTSFATPYLVVTHYPDLAKTHGVVLLRGELTPSTAasapspaanedggrymLSQQDAQLLAIHVQRFYL----WNEGSEERA 328
                 99************************************************************************************....689****** PP

                 HHHHHHHHT-TT--HHHHH CS
       ATP11 254 kLLedFtkgdeeFkveeLi 272
                 +LL+ F++ +++Fk+e+L+
  CDO70900.1 329 ALLKAFHETPADFKWEDLL 347
                 *****************96 PP

>> DUF5333  Family of unknown function (DUF5333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.7   9.7e-05      0.43      37      85 ..      41      89 ..      32      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.7e-05
     DUF5333 37 lseleslkakarelGYseaeieayvddkaekarlraeaeaylaakGvka 85
                 +++e+l++kare+G s ++++  +++++  +rl++ +e+  ++ G+++
  CDO70900.1 41 EKYAEKLQRKAREQGKSVEQLRMELKEQERLRRLQKLKEESSKSTGASE 89
                5899*************************************99999976 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00011      0.49       7      28 ..      40      61 ..      40      61 .. 0.91
   2 ?   -1.2   0.4      0.48   2.2e+03      11      24 ..      71      84 ..      67      87 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                EHHHHHHHHHHHHHHTSSHHHH CS
       RHH_1  7 deellerLdelarrrgrSrSel 28
                +e+++e+L+++ar++g+S+ +l
  CDO70900.1 40 EEKYAEKLQRKAREQGKSVEQL 61
                589***************9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.48
                HHHHHHHHHHHTSS CS
       RHH_1 11 lerLdelarrrgrS 24
                l+rL++l++++ +S
  CDO70900.1 71 LRRLQKLKEESSKS 84
                78999999988777 PP

>> DUF4551  Protein of unknown function (DUF4551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.4   0.00052       2.3     132     227 ..      19     116 ..       5     154 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00052
     DUF4551 132 rressgaakkssslnessldakekeektvskksqlslsl.selrklseeekeelesekalks..lrsasrplPesllsrapkppsspkeppssslskde 227
                 r++ssga   +  +  ++++ +ek      + +++++ +  e+ +++ +e+e+l++ ++lk+  ++s+++ +P+     +p+ +s++++p++  + kd+
  CDO70900.1  19 RQSSSGAVYRNAGVDTAKVNYEEK-YAEKLQRKAREQGKsVEQLRMELKEQERLRRLQKLKEesSKSTGASEPSRAYQASPDASSNTSQPTPPLSRKDS 116
                 566666665565666656633322.22233333333333366777777778888888888883344455555555444444444444444444433343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2571.22
//
Query:       CDO70901.1  [L=220]
Description: hypothetical protein BN946_scf184829.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-31  108.3   0.0    4.9e-31  108.1   0.0    1.0  1  NAD_binding_10  NAD(P)H-binding
    1.3e-09   38.0   0.0      2e-09   37.4   0.0    1.3  1  NmrA            NmrA-like family
    3.5e-05   23.4   0.0    5.1e-05   22.8   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00019   20.5   0.0       0.01   14.8   0.0    2.0  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.036   14.1   0.0      0.045   13.8   0.0    1.2  1  PAC2            PAC2 family
       0.11   12.4   0.3        7.7    6.4   0.1    2.8  3  LpxI_N          LpxI N-terminal domain
       0.13   11.6   0.0       0.21   10.9   0.0    1.2  1  GCS             Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   1.9e-34   4.9e-31       1     182 [.       7     206 ..       7     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1.9e-34
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.HHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.....HHHH.......HHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla.eleaeeglevvegdvtdvedlaealkgadaVvsalggggk.....deeg.......akniv 82 
                     G+tG  G +l+k++la+ +h+v+++vR+p+kl+ ++ ++++++v eg++ d+e+l ea++g+ aV+salg+  k        +          i+
      CDO70901.1   7 GGTGPCGLQLIKQALAH-NHSVVVYVRSPQKLPvDITSNPAVTVYEGQLIDAEKLYEAIQGVHAVLSALGPAVKngpfhP--SntplalaYSLII 98 
                     9****************.6*************857889*******************************88777556551..144567779999* PP

                     HHHHHCT--EEEEEEETTTTSGCGCH...HHHHHHH...CCHHHHHHHHHHHHHHHHS..SSEEEEEEE-CEE-ST--SEEEEETTSS----EEE CS
  NAD_binding_10  83 daakeagvkRfvlvsaigvgdevpge...fgewnke...llkaylaakraaeellras..gldwTivrpggLtdepttkyrvvekgepfkggsis 169
                     d++k+ +vkR++l++++ ++de+++    f+ +++    +  +++++  a  e +r+s  +l wTi r + Ltd+p t ++++  g+   g++ s
      CDO70901.1  99 DVMKRRDVKRLILLGTASMKDEHDKFsvqFSVLVSGvavFAHNAYKDVVAIGETVRSSanDLVWTIARVPILTDKPDTAFVAGYIGDGKIGTRLS 193
                     ********************9866532113333332232446778999999999999755899******************************** PP

                     HHHHHHHHHHHCT CS
  NAD_binding_10 170 radVAdvlvavld 182
                     ra  A+++++ l+
      CDO70901.1 194 RAAFAAFVIQELE 206
                     *********9886 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   7.7e-13     2e-09       3     110 ..       5     122 ..       3     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 7.7e-13
                 ESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GG..........S-HHHHHHHHHHHHH CS
        NmrA   3 viGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfy..........skeiedgkklvdAak 90 
                 ++G+TG  G ++++ +l+++h+v + vR +++  ++  ++ ++++v +g+l d e l ea++gv++v s++g +                 + ++d+ k
  CDO70901.1   5 ILGGTGPCGLQLIKQALAHNHSVVVYVRSPQKLPVDITSN-PAVTVyEGQLIDAEKLYEAIQGVHAVLSALGPAvkngpfhpsnTPLALAYSLIIDVMK 102
                 89****************************9988876555.555555***********************99878899999885455566678899999 PP

                 HHS-SEEEEEE---GG.GT. CS
        NmrA  91 eaGvkhfiySslgddndrsn 110
                 +  vk++i  + ++++d+++
  CDO70901.1 103 RRDVKRLILLGTASMKDEHD 122
                 99999999866666666554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     2e-08   5.1e-05       2     119 ..       4     118 ..       3     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2e-08
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE-..-S.---HHHHHHSHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihl..Aa.vggvaassedpadfiekn 91 
                 +++G+tG  G +l+k+ l++++ v++  r +++ +      +      +++e+ l d+++l ++++  +++av+ +   a   g+ + s++p ++++  
  CDO70901.1   4 FILGGTGPCGLQLIKQALAHNHSVVVYVRSPQKLPVD----ItsnpavTVYEGQLIDAEKLYEAIQ--GVHAVLSAlgPAvKNGPFHPSNTPLALAY-- 94 
                 699********************99999995555544....2334477******************..89999998543335666666666666666.. PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGG CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevY 119
                       +++++++++vkrl+ l+++++ 
  CDO70901.1  95 ----SLIIDVMKRRDVKRLILLGTASMK 118
                 ....5689****************9985 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-06      0.01       2      73 ..       5      73 ..       4     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.1e-06
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihl 73
                ++Gg+G  G +l+k+ +  ++   v v+    ++   + +s+  v+ v eg + d++kl ea++gv++v+  
  CDO70901.1  5 ILGGTGPCGLQLIKQALAHNH--SVVVYVRSPQKLPVDITSNPAVT-VYEGQLIDAEKLYEAIQGVHAVLSA 73
                89***************9996..66665444444445666666666.*********************9865 PP

>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05     0.045      23     120 ..      21     122 ..      12     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                 T..TEEEEEEEEHCCHSBCCCC..SEEEEETTEEE-SEEEEEETTT.SEEEEEEE.......E-HSCHHH...HHHHH.HHHHHHHTTESEEEEEEEEE CS
        PAC2  23 l..eaekvgeidsdyllpfvgp.rpvvlveegrelepprlyakdsgsrdllvlqg.......repilqye...efaka.lldwaeelgvkevvvLggld 107
                 l  ++  v +++s++ lp+  + +p v+v eg+ ++  +ly   +g + +l   g            +++   ++a   ++d++++ +vk+ ++Lg + 
  CDO70901.1  21 LahNHSVVVYVRSPQKLPVDITsNPAVTVYEGQLIDAEKLYEAIQGVHAVLSALGpavkngpF---HPSNtplALAYSlIIDVMKRRDVKRLILLGTAS 116
                 3448999***********9988***********9******97755556777777788874432...3333557788888****************9998 PP

                 ESS-ES..TTS-. CS
        PAC2 108 ageradvphtrpe 120
                   ++       ++
  CDO70901.1 117 MKDE-------HD 122
                 3333.......32 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.059   1.5e+02       3      33 ..       4      34 ..       2      71 .. 0.79
   2 ?    6.4   0.1     0.003       7.7      56      75 ..      96     115 ..      91     126 .. 0.86
   3 ?    0.4   0.0      0.23   5.8e+02      49      85 ..     126     162 ..     114     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.059
      LpxI_N  3 gliAGsGrlPllvaeaakaagrevvvvaleg 33
                 ++ G G   l+++++a a++++vvv+  + 
  CDO70901.1  4 FILGGTGPCGLQLIKQALAHNHSVVVYVRSP 34
                5899*******************99987655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.003
      LpxI_N  56 klikaLkregvtevvmaGkv 75 
                  +i+ +kr++v++++++G+ 
  CDO70901.1  96 LIIDVMKRRDVKRLILLGTA 115
                 5899**************86 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
      LpxI_N  49 vsvgqlgklikaLkregvtevvmaGkvekpklldlrp 85 
                 v++  l + ++ +  +  ++vv +G+  ++++ dl  
  CDO70901.1 126 VQFSVLVSGVAVFAHNAYKDVVAIGETVRSSANDLVW 162
                 5555666677889999999999999999998887765 PP

>> GCS  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.1e-05      0.21       9      67 ..       8      66 ..       5      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.1e-05
         GCS  9 GmGsccLQvtfqaknieearllYdqlaplaPillalsaaspiykGlladvdvrwnvisa 67
                G G c LQ+  qa   +++ ++Y +  +  P+ ++   a  +y G l+d +  ++ i++
  CDO70901.1  8 GTGPCGLQLIKQALAHNHSVVVYVRSPQKLPVDITSNPAVTVYEGQLIDAEKLYEAIQG 66
                889************************************************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1484.95
//
Query:       CDO70902.1  [L=317]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-06   25.9   0.0    1.4e-05   24.6   0.0    1.7  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
      0.094   12.4   0.1       0.26   11.0   0.0    1.6  2  Band_7_1        SPFH domain-Band 7 family
        0.1   13.0   0.0       0.25   11.8   0.0    1.6  1  DUF296          Plants and Prokaryotes Conserved (PCC) domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.4e-09   1.4e-05      16      98 ..      65     158 ..      46     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.4e-09
                     EETTSEEEEEEEE..........EEEEEEEECCEESSEEEEEEEE.---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEBTTBSGE CS
  Glyco_hydro_16  16 vengetltltldk..........esgsrikskksflyGkvearik.aaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvygkGkgkr 98 
                     + +++t  +++d+          +++ ri+s+++++      +i+ ++++ G+++a +   +d+++++E+Di E   nd +  q++++++++ ++
      CDO70902.1  65 FATDDTFIMRADSfsvvdpsapgRNSVRIQSNNQYTTHVSVYDIRhMPQGCGTWPAAWEVGQDWPNQGEVDIlEGT-NDIEPNQSTLHTSANCAQ 158
                     3323344444444888888888899******888887777788998*************9999*********8876.778889999999887664 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.3e-05      0.26      65     119 ..      45     101 ..      31     108 .. 0.81
   2 ?   -1.9   0.0      0.38   2.3e+03      79      94 ..     239     253 ..     217     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
    Band_7_1  65 PfkaevYfvntr..qftdlkwGtknpvilrDpefglvrvrafGtyslrvvdpakllr 119
                 P +  v +v+++    ++l + t ++ i+r ++f++v   a G  s+r++  +++ +
  CDO70902.1  45 PTHGRVNYVDQQtaLAQNLSFATDDTFIMRADSFSVVDPSAPGRNSVRIQSNNQYTT 101
                 55566667764411579********************************99887765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.38
    Band_7_1  79 tdlkwGtknpvilrDp 94 
                 td  wGt+ ++ + D+
  CDO70902.1 239 TD-AWGTPTALFVNDQ 253
                 33.6999999999885 PP

>> DUF296  Plants and Prokaryotes Conserved (PCC) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.1e-05      0.25      52      95 ..      60     176 ..       8     180 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.1e-05
                 -.......................................................................S-EEEEEEEEEEEETT..EEEEEEEEE CS
      DUF296  52 l.......................................................................grfeilslsGtilpdg..lHlhvslag 77 
                                                                                         g+++il  +  i p++  lH ++ +a+
  CDO70902.1  60 AqnlsfatddtfimradsfsvvdpsapgrnsvriqsnnqytthvsvydirhmpqgcgtwpaawevgqdwpnqGEVDILEGTNDIEPNQstLHTSANCAQ 158
                 05555555555555555555555555555666666666666666666666677777777777777777777799************6678********* PP

                 TTSEEEEEEEEEE.EEEE CS
      DUF296  78 edgqvvgGhlaegplvaa 95 
                 +dg+v+ G+ ++ ++ +a
  CDO70902.1 159 PDGRVMNGNSVSNNCDVA 176
                 ********9998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2250.15
//
Query:       CDO70903.1  [L=265]
Description: hypothetical protein BN946_scf184829.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-06   25.7   0.0    1.8e-05   24.7   0.0    1.5  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.8e-10   1.8e-05      19     128 ..      71     173 ..      56     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.8e-10
                    GG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH..........HHTT-TTEEEETTTEEEETTEEEEE CS
  BPL_LplA_LipB  19 selesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealg.y..rd.skpgiegipvfikwpnDlyvngrKlaG 110
                      l ++g++vv + +gG+ ++h+p++++ y ll++   +t ++  ++ y++++       l+ +  ++    + +g+            +  K+a+
     CDO70903.1  71 MRLRATGADVVLTLRGGQTTFHGPGQIVGYPLLDL--GRTSPPMGIRDYICRMQKLLKAHLAeEhdIQpVPSEHTGVFLD---------EHTKVAS 155
                    567789999*************************9..4456666777778877777777774312211233333344444.........******* PP

                    EEEEEEETTS-EEEEEEE CS
  BPL_LplA_LipB 111 iavtstrgktlhhivigv 128
                    i+v+++ + t+h+++++v
     CDO70903.1 156 IGVQVRHRLTTHGFALNV 173
                    **************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1885.09
//
Query:       CDO70904.1  [L=390]
Description: hypothetical protein BN946_scf184829.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-10   38.4   0.5    1.8e-08   34.1   0.5    2.3  1  Thiolase_N   Thiolase, N-terminal domain
    1.2e-06   28.2   0.1      4e-06   26.5   0.0    1.9  2  Thiolase_C   Thiolase, C-terminal domain
    0.00026   20.8   0.0     0.0022   17.8   0.0    2.1  2  ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase 


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.5     3e-12   1.8e-08      76     195 ..       4     126 ..       1     164 [. 0.76

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3e-12
                 SEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEETCTTT...TGGSSSSEEEEEHHHHHHTEETT.TTSEHHHHHHHHHHHHT--H CS
  Thiolase_N  76 vpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptaestdvr...sglklgdekakdllipdgladaf.neehmGltaenlakkykisR 170
                 +p + vn+ cs g +a+++a + ++ag +d+++a G E+ms+ +  ++   r    ++ +++++  +  +  g ++      + +  a+++ +k+++  
  CDO70904.1   4 IPITNVNNNCSTGSTALYNANNLVKAGLVDCALALGFERMSRGSLGTHFPDRespIQVFHEASYGLEEQLSAGQNHGPgAPRMFANGAQEYFDKHGANI 102
                 78999************************************99887765444333334444444444444443333321345668899*********** PP

                 HHHHHHHHHHHHHHHHHHHTTTTTT CS
  Thiolase_N 171 eeqdefAvkshqkaaaaqkagkFkd 195
                 +++++ A k+h+++++++ ++ F+d
  CDO70904.1 103 NHLAQIASKNHKHSVNNPYSQ-FRD 126
                 *******************99.988 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.6   3.6e+03      25      44 ..     159     178 ..     142     181 .. 0.64
   2 !   26.5   0.0   6.7e-10     4e-06      27      99 ..     208     302 ..     190     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHT--GGGESE CS
  Thiolase_C  25 ayaikkvlkkagltvedidl 44 
                 + a++  ++k gl+ + i++
  CDO70904.1 159 IVASEDFVHKHGLENQAIEI 178
                 45666677777777776665 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 6.7e-10
                 HHHHHHHHHT--....GGGESEEEE--SBHHHHHHHHHHHT--G..................GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHH CS
  Thiolase_C  27 aikkvlkkaglt....vedidlfEinEAFaaqaLavakaldldl..................ekvNvnGGaialGHPlGasGaRivvtllselkk 99 
                 a+++v  +agl      +++ ++E+++ Faa  L +  al+l +                    +N  GG  a GHPlGa+G  +   ++ +l++
  CDO70904.1 208 AAENVFAEAGLYgregRDQVGVVELHDCFAANELITYDALGLCEpgqahkmvergdntyggkYVINPSGGLEAKGHPLGATGLGMHFYIAMQLRQ 302
                 6666777777753333578***********************999***************98899*****************9999999999887 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.6e-07    0.0022       3      39 ..       9      45 ..       7      59 .. 0.93
   2 ?    0.1   0.0      0.12   7.3e+02      47      64 ..     146     163 ..     135     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.6e-07
                 EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III  3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39
                 +n++Cs+  +al +A++l+++g + ++L  g e++s+
   CDO70904.1  9 VNNNCSTGSTALYNANNLVKAGLVDCALALGFERMSR 45
                 89**********************************8 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.12
                  HHHTTB-EEEEEEEEEEE CS
  ACP_syn_III  47 stavlfGDGAgAvvleas 64 
                    +   +DG +++++  +
   CDO70904.1 146 YMCSPTSDGSACCIVASE 163
                  5666779****9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2823.98
//
Query:       CDO70905.1  [L=156]
Description: hypothetical protein BN946_scf184829.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   12.8   0.9      0.076   12.6   0.9    1.0  1  SMYLE_N   Short myomegalin-like EB1 binding proteins, N-termi


Domain annotation for each model (and alignments):
>> SMYLE_N  Short myomegalin-like EB1 binding proteins, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   4.3e-06     0.076     182     268 ..      31     121 ..      26     154 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-06
     SMYLE_N 182 EAvCkvPRkvaRsiscgpstrysasvgeee.....eavselaaaelaeaksssegesleeespassvesLdtavdvvkpakkkeeesekeak 268
                  AvC+v R+++ s s g ++  s   +++      +++++l+++ +a   +  e+   +    ass+ s d++   ++ + ++ +++ek++ 
  CDO70905.1  31 SAVCRVIRRIGLSSSSGETSTHSRDYNARSlggvdKKAPSLVSKLTAFGPNRPESPIKACVLQASSMISSDASSRFSRRQGRR-TRTEKNER 121
                 69*********999999988888777444422211333333333333333333333333556677777777777754444332.22333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 995.19
//
Query:       CDO70906.1  [L=610]
Description: hypothetical protein BN946_scf184829.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.023   14.3   0.2       0.17   11.4   0.1    2.1  3  CD34_antigen  CD34/Podocalyxin family
       0.18   11.7   0.1       0.56   10.1   0.1    1.8  1  TMEM154       TMEM154 protein family


Domain annotation for each model (and alignments):
>> CD34_antigen  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.085   7.6e+02      99     141 ..      83     119 ..      70     124 .. 0.71
   2 ?   11.4   0.1   1.9e-05      0.17      98     136 ..     250     288 ..     237     292 .. 0.75
   3 ?   -3.7   0.0       0.8   7.2e+03     130     162 ..     430     461 ..     427     465 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.085
  CD34_antigen  99 seqdyskkllialvtsglllaiLlvagyYgclhrRlskskage 141
                   s q ys++l+ a v       + +va y  c+  R s s++g+
    CDO70906.1  83 STQAYSNQLITAAVQ------FEGVAVYVYCIVTRSSTSPDGN 119
                   556666665555444......778999888*******999975 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.9e-05
  CD34_antigen  98 rseqdyskkllialvtsglllaiLlvagyYgclhrRlsk 136
                   +s q+ +  + +a v++ l la+++v+  Y cl +R s 
    CDO70906.1 250 NSTQKRTIIIAVATVCGVLGLAAIIVTISYCCLRKRYSH 288
                   34445555555667999999****************996 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 0.8
  CD34_antigen 130 lhrRlskskagerLgEelqyvEngyhdnptlsv 162
                   l  Rl+ + a ++   +  yv+ g+  + tls+
    CDO70906.1 430 LIPRLPTTSATSHVNSDRTYVDPGG-STSTLSS 461
                   5679999999999999999999998.4444665 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   6.3e-05      0.56       9      88 ..     205     285 ..     201     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.3e-05
     TMEM154   9 dtaletatleeesadat.saasteseslkqeeakeslssaelsnesdqlelvlmiiiPlvllillllvviiliqkkkrkrs 88 
                 d++l t+t ++ s++++ s+    s s++++ +   +ss   s  ++ ++  ++i++  v  +l l ++i+ i +++ +++
  CDO70906.1 205 DVSLATNTPSPSSSQLSpSISPGASASIPTTPTSLAASSSGPSSPNSTQKRTIIIAVATVCGVLGLAAIIVTISYCCLRKR 285
                 67788888888888876344455678888887777777777777777777888999*****99999999999*99996664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4074.01
//
Query:       CDO70907.1  [L=109]
Description: hypothetical protein BN946_scf184829.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.048   13.7   5.2      0.056   13.4   5.2    1.1  1  Chlorosome_CsmC  Chlorosome envelope protein C
      0.049   14.0   0.5      0.054   13.8   0.5    1.0  1  Muted            Organelle biogenesis, Muted-like protein
      0.091   13.2   3.9       0.16   12.5   3.9    1.3  1  T7SS_ESX_EspC    Excreted virulence factor EspC, type VII ESX
        0.1   10.6   2.8       0.11   10.5   2.8    1.0  1  PRTP             Herpesvirus processing and transport protein
       0.16   12.5  12.3        7.5    7.2  12.3    2.2  1  YtxH             YtxH-like protein
       0.21   12.2   7.1        1.5    9.4   3.5    2.1  1  DUF883           Bacterial protein of unknown function (DUF88
       0.23   11.9   4.7       0.26   11.6   4.4    1.3  1  Mobilization_B   Mobilization protein B
       0.51   10.5  13.1       0.72   10.0   5.6    2.3  2  LEA_4            Late embryogenesis abundant protein
        3.4    7.8   5.7        5.1    7.2   5.7    1.4  1  DUF809           Protein of unknown function (DUF809)


Domain annotation for each model (and alignments):
>> Chlorosome_CsmC  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   5.2   2.8e-05     0.056      52     129 ..       8      81 ..       2      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
  Chlorosome_CsmC  52 gtvgslidatGiskllgstsgvvgetidrvaitvkdvsraaGelysdavknvenvtdnaakavGdvgvsasevvknva 129
                      ++  s++ ++  +    +ts v  +  ++va     v +  G+    a+++ e++t++  +++G v  +ase+   va
       CDO70907.1   8 SSARSVVSSSSRG---FHTSPVSFKVTEKVAEVADKVNKKVGQTLASAIEKGEQATEKTKETIGAVKEKASETST-VA 81 
                      5556666665555...5678888899999**99999************************************854.33 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   2.7e-05     0.054      33     121 ..      19     107 ..      16     109 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
       Muted  33 RgdrevelLenikklvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekk 121
                 Rg + + + ++++++v e+ +++++k+ +++++ +++ +++ e+ +e++  +++k +e+     ++ +++    ++   +f+++++++ 
  CDO70907.1  19 RGFHTSPVSFKVTEKVAEVADKVNKKVGQTLASAIEKGEQATEKTKETIGAVKEKASETSTVAGQKANQTAAGAREGARDFKHDVEKEA 107
                 566666666899************************************************99999999999999999999999988775 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.9     8e-05      0.16       8      81 ..      30     104 ..      28     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8e-05
  T7SS_ESX_EspC   8 dpdhlrelaakhde.vaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLr 81 
                    +++++ e+a+k+++ v +++asa +   +a+++  ++ G+++ +   + + a +  ++++++ ++ ++++ +++ 
     CDO70907.1  30 VTEKVAEVADKVNKkVGQTLASAIEKGEQATEKTKETIGAVKEKASETSTVAGQKANQTAAGAREGARDFKHDVE 104
                    589999***9998527789********99**************************************99998775 PP

>> PRTP  Herpesvirus processing and transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.8   5.6e-05      0.11     382     475 ..      10     108 ..       2     109 .] 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.6e-05
        PRTP 382 iealkkdcikaflkkplfkrllkkenelyarlke.iLeeirgrledgeaeaedesteealksagaseaep.ag...akaerggekgalelvdkvlrdvk 475
                   ++ +++++ f ++p+  ++++k  e+ +++++ + + +++  e+ge+++e++++   + +++ase++  ag   +++  g+++ga+++ ++v+++++
  CDO70907.1  10 ARSVVSSSSRGFHTSPVSFKVTEKVAEVADKVNKkVGQTLASAIEKGEQATEKTKETIGAVKEKASETSTvAGqkaNQTAAGAREGARDFKHDVEKEAR 108
                 5578899999*******99999******99997625566777888888887776655444444444433302200022333344456666667766665 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  12.3    0.0038       7.5      33      66 ..      37      77 ..       6     109 .] 0.59

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0038
        YtxH 33 kaddlkekakelleeakeka.......kekaedlkekvkek 66
                 ad++ +k+ ++l +a ek+       ke++ ++kek++e+
  CDO70907.1 37 VADKVNKKVGQTLASAIEKGeqatektKETIGAVKEKASET 77
                44444444444444444444444222233333333333333 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.5   0.00078       1.5       9      59 ..      58     108 ..      57     109 .] 0.65

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00078
      DUF883   9 slladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerak 59 
                 +++++++e + + +++a e+   + ++++++++ are +rd +++v+++a+
  CDO70907.1  58 QATEKTKETIGAVKEKASETSTVAGQKANQTAAGAREGARDFKHDVEKEAR 108
                 556666667777777777777777777777777777777777777776665 PP

>> Mobilization_B  Mobilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.4   0.00013      0.26      24      91 ..      31      99 ..       9     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
  Mobilization_B 24 aqsmatladearqviaevqqaseeqaaewlkaqrqagaawvelakelrevaaela.kaaqsarsaargw 91
                    ++ +a +ad+  +++ ++  ++ e+  + +++ +++  a +e a e   va++ a ++a  ar  ar +
      CDO70907.1 31 TEKVAEVADKVNKKVGQTLASAIEKGEQATEKTKETIGAVKEKASETSTVAGQKAnQTAAGAREGARDF 99
                    567899*************9999999999**********************986514566778888765 PP

>> LEA_4  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.6   0.00036      0.72       6      42 ..      32      68 ..      29      70 .. 0.94
   2 ?    7.6   5.6     0.002         4       3      32 ..      58      87 ..      57      96 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00036
       LEA_4  6 eKakeaKDataeKageyKDyAaeKAgeaKDkaaekag 42
                eK  e++D+  +K+g++  +A eK+++a +k+ e++g
  CDO70907.1 32 EKVAEVADKVNKKVGQTLASAIEKGEQATEKTKETIG 68
                89********************************998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.002
       LEA_4  3 yaaeKakeaKDataeKageyKDyAaeKAge 32
                 a eK+ke+  a +eKa e+  +A +KA +
  CDO70907.1 58 QATEKTKETIGAVKEKASETSTVAGQKANQ 87
                455666666666666666666666666654 PP

>> DUF809  Protein of unknown function (DUF809)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.7    0.0026       5.1      70     128 ..      26      85 ..      18     109 .] 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0026
      DUF809  70 lgvkitiksnvpndevtkkvspiikgeiegkeekkeg.kgeiegkeekkegkgeiegkee 128
                 +  k+t k     d+v kkv   +   ie  e+  e  k  i + +ek    + + g++ 
  CDO70907.1  26 VSFKVTEKVAEVADKVNKKVGQTLASAIEKGEQATEKtKETIGAVKEKASETSTVAGQKA 85 
                 678999999999**********99999998777766514445555666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1619  (0.0903006); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 739.58
//
Query:       CDO70908.1  [L=383]
Description: hypothetical protein BN946_scf184829.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   13.8   0.2      0.083   12.7   0.2    1.5  1  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.6e-06     0.083      19      50 ..     264     296 ..     260     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-06
    LapA_dom  19 LsllllvafgiGallgwllsl.wsylrlrrelr 50 
                 +sl l+++f  G+++++++++ +s++++r++ r
  CDO70908.1 264 VSLALVITFCGGFFVTVVIGTaVSKWQKRKRSR 296
                 79***********7777777768***9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2744.74
//
Query:       CDO70909.1  [L=317]
Description: hypothetical protein BN946_scf184829.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   10.3   8.6       0.44    9.8   8.6    1.2  1  ORC6      Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.6   2.5e-05      0.44      83     192 ..     172     282 ..     163     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.5e-05
        ORC6  83 qsLsnsssatstPskspsspstdpkslrkqlfsTPtKsktlktalsasksssplkrrrklaneedgeeeeed.apswvstsirdsrpeisrtlspsksl 180
                 + L  s+s+++ P+ +ps+ps +  s +++  sTP+  +t +     s+s+sp    ++  + ed++e++ +  p+  ++  r +r + s++  psk  
  CDO70909.1 172 RVLVASPSCSPEPEEAPSTPSLTHSSSPSSCSSTPSALRTPSC----SPSPSPAADDYEPSPCEDDDEDDDEyIPAHCMRAKRVARAGRSSA--PSKRG 264
                 668888899***********99999999999999998775444....57899999999999999999999999**********666666666..55555 PP

        ORC6 181 gdesilfndss......d 192
                 g++ + + ++       +
  CDO70909.1 265 GKKTVRASPYPavylsaS 282
                 544443333323333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2210.80
//
Query:       CDO70910.1  [L=520]
Description: hypothetical protein BN946_scf184829.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-59  201.2   0.0      3e-59  201.0   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.0   0.0   1.6e-63     3e-59      71     440 ..     129     491 ..      73     513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 201.0 bits;  conditional E-value: 1.6e-63
                 SHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTS CS
        p450  71 deallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlled 167
                 ++ l++++++  +  + +f +g+ + + Rr+l+  +t + +l  ++++ ++++++ ++++  +a++      i     +  ++++ +++ g++   ++d
  CDO70910.1 129 EPCLVHSAKQILRPDNWVFLTGKVHVEYRRVLNSLFTRK-ALgIYVAVQDQITRKYIKQWLAEAEKDPsPKPIMMTCRDLNMETSLRVFCGSH---IDD 223
                 55567777788889999**********************.9*9*****************999999953444444556778999999999998...669 PP

                 SHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC..TTCTCTSSSSHHHHH CS
        p450 168 eklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllak..kekkgesklsdeela 264
                 e + e+ ++ +++   l  + v++ l+ p      tk ++ ++ ++k++ ++l++   + ++ +    k++  +ld+ + ++   ++kg++ +sd e+a
  CDO70910.1 224 EAAREIGEKYWAITVAL--ELVNFPLPLP-----GTKVYKAIQ-CRKVALKHLENAAAKSKQAMAAG-KEPECMLDHWIRSMdePTYKGRKDFSDLEMA 313
                 99999999999994333..4434444444.....566666666.***********************.79************887777779******** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTT.T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT CS
        p450 265 atvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkr.eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkG 360
                 + v+ +lfa++d +ss+l +++ +La++P++ +k+reE d+v  gd + ++t d+l ++pyl+a+++E+LR  p+v   +p ++tk   i++ y++p+G
  CDO70910.1 314 MVVFSFLFASQDAMSSGLIYGIQHLADHPDIFAKVREEQDRVRaGDYErPITLDMLDEMPYLRAFVRESLRVKPPVT-MVPYKTTKAFPISEdYTVPAG 411
                 *******************************************8876669***************************.9***********999****** PP

                 -EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 361 tevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                 ++vi++ y  ++dpev+pn+ee  peR+ld +g  ++++  +l FG Gp+ CiG   A+m++ l+la  +   ++e ++ 
  CDO70910.1 412 SMVIPSFYNSLHDPEVYPNAEELIPERWLDPNGSANQNPKNYLVFGSGPHKCIGLEYAMMNIALVLADAVALMDWEHIRT 491
                 *********************************999*******************************9999888886553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3660.16
//
Query:       CDO70911.1  [L=826]
Description: hypothetical protein BN946_scf184829.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1303  (0.0726756); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 5220.69
//
Query:       CDO70912.1  [L=787]
Description: hypothetical protein BN946_scf184829.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-26   90.3   0.2    1.6e-25   89.5   0.2    1.4  1  Utp12          Dip2/Utp12 Family
    2.1e-07   31.5   2.1     0.0016   19.2   0.0    4.0  4  WD40           WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.23   11.2   0.0    1.4  1  UTP15_C        UTP15 C terminal
        0.2   11.7   0.4       0.86    9.6   0.2    2.2  2  PD40           WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.2   3.5e-29   1.6e-25       2     107 .]     547     664 ..     546     664 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 3.5e-29
                 HHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTT..............TTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHH CS
       Utp12   2 deelleevlekippsdirltvlrLpssyvlkLLeflaerlaeks..............phlelllrwlkallrvHgsylvaspsdlvpaLrslqkslre 86 
                 d+ lle++l++++ ++ir+tv+rLp++++++L ++++erl++                ++   l+ w+k++l++H+++l++ p+ lv++L++l+++l++
  CDO70912.1 547 DTRLLETCLAHSDLTLIRNTVRRLPPQLAVPLVTACVERLNRGArgnnlkgggggassQRGTALINWVKSVLTTHSGHLMTMPD-LVARLSGLHATLTH 644
                 899***********************************99666699********99999************************7.************** PP

                 HHHHHHHHHHHHHHHHHHHHH CS
       Utp12  87 rlktlskllglnlgrLdylls 107
                 rl ++++ll+l+ grLd+++s
  CDO70912.1 645 RLTLQQSLLSLS-GRLDMVIS 664
                 ************.*****975 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.6   2.7e+03      18      26 ..      43      51 ..      30      66 .. 0.71
   2 ?   -3.4   0.0         4   1.8e+04      10      18 ..      76      88 ..      71      90 .. 0.65
   3 !    8.9   0.1   0.00066         3       3      38 .]     152     194 ..     150     194 .. 0.70
   4 !   19.2   0.0   3.5e-07    0.0016       3      37 ..     249     284 ..     247     285 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.6
                EETTSSEEE CS
        WD40 18 fspdgawla 26
                fspdg+++a
  CDO70912.1 43 FSPDGQLFA 51
                9*****964 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
                S.SS...EEEEEE CS
        WD40 10 H.ss...vtslaf 18
                H  +   vtsl++
  CDO70912.1 76 HvVDagrVTSLCW 88
                55223469**977 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00066
                 EEEEEESS.SS..EEEEE......EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ss..vtsla......fspdgawlasGsdDgtvriWd 38 
                 +lrtl+   ss  + ++a       +p+  w +s+s Dg +r+W+
  CDO70912.1 152 LLRTLSDPsSSsaILAVAgqdadsEDPHTLW-TSSS-DGALRLWN 194
                 6677765542246777777778777788888.7778.*******8 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 3.5e-07
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l ++tGH s+v+ l++ + +++l+s+s D+ + +W
  CDO70912.1 249 TLAKFTGHaSPVSTLRWLDRSRFLSSASTDRFINVW 284
                 6889****999**************9999******* PP

>> UTP15_C  UTP15 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05      0.23      94     146 ..     609     661 ..     603     662 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5e-05
     UTP15_C  94 llvdvanvlldlyseklgqseeldelvkrLkrkvreevelakellelkGmlel 146
                  l+++++ +l + s +l   + l   ++ L++++++ + l+++ll+l+G l++
  CDO70912.1 609 ALINWVKSVLTTHSGHLMTMPDLVARLSGLHATLTHRLTLQQSLLSLSGRLDM 661
                 588999**********************************************9 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00019      0.86      15      27 ..      42      54 ..      39      54 .. 0.93
   2 ?   -2.3   0.0         1   4.6e+03      19      28 ..     139     148 ..     138     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
                EE-TTSSEEEEEE CS
        PD40 15 sfSPDGkrlaFsS 27
                sfSPDG+ +aF S
  CDO70912.1 42 SFSPDGQLFAFLS 54
                8**********87 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
                 TSSEEEEEEE CS
        PD40  19 DGkrlaFsSd 28 
                 DG+ l Fs +
  CDO70912.1 139 DGSLLLFSPS 148
                 9******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.39s 00:00:01.36 Elapsed: 00:00:00.56
# Mc/sec: 4266.93
//
Query:       CDO70913.1  [L=397]
Description: hypothetical protein BN946_scf184829.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-77  258.6   0.0    8.8e-77  258.0   0.0    1.3  1  Pkinase        Protein kinase domain
    4.6e-36  124.4   0.0    8.8e-36  123.5   0.0    1.4  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00088   18.3   0.0      0.034   13.1   0.0    2.3  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.027   13.8   0.0    1.7  1  Kinase-like    Kinase-like
      0.015   15.2   6.9       0.17   11.8   0.0    2.6  3  APH            Phosphotransferase enzyme family
        4.6    7.1  23.9        5.6    6.9  23.9    1.2  1  TFIIA          Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.0   0.0   2.9e-80   8.8e-77       1     264 []       3     289 ..       3     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 258.0 bits;  conditional E-value: 2.9e-80
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH...HHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle...rkgsls 96 
                 y++leklGeG++++Vyk+++++t++ivA+K+i  + ++  + ++++rEi+++k+lkh nivrly+v++++++l+l++ey+e + l++++    ++g+l+
  CDO70913.1   3 YVQLEKLGEGTYATVYKGRSRTTNEIVALKEIHLDAEEG-TPSTAIREISLMKELKHTNIVRLYDVIHTETKLVLIFEYCERD-LKKYMDvhgDRGALD 99 
                 7789******************************98876.557**************************************76.888887777999*** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 + +++++++q+l+g +++H+++++HrDlKp+N+Li++kgelK++DFGla+ +    + ++++v+t +Y+AP vl +++ ys+++DvWs+G+i++e+++g
  CDO70913.1 100 PVTVRSFMYQLLKGTAFCHENRVLHRDLKPQNLLINRKGELKLGDFGLARAFGVPVNtFSNEVVTLWYRAPDVLmGSRTYSTSIDVWSCGCIFAEMISG 198
                 ****************************************************9988889***************99999******************** PP

                 S-STTTSSHHHHHHHHHHT.....HHHHHHHCTSHH...HHHTTS...........................-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 194 kppfsgekgkekvekeldq.....lekilkilgetkeklpeasei...........................seeakdllkkllkkdpkkRltaeellq 260
                  p+f+g++++++  ++++        +++ki                                         s++a+dll++ll+ dp kR++a+e+l 
  CDO70913.1 199 VPLFRGRDNQDQLLHIMRIigtpdERTLRKIA------------TegqtegqaqkqyprypkipfsqvlpkaSPQALDLLERLLQFDPAKRISAAEALT 285
                 *****777766555554443222222233333............1233344444455777777************************************ PP

                 SGGG CS
     Pkinase 261 hpyl 264
                 hpy+
  CDO70913.1 286 HPYF 289
                 ***8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   2.9e-39   8.8e-36       4     213 ..       6     209 ..       3     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 2.9e-39
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.CTTTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk.ekekl 100
                   +klGeG++++V++g+ +    ++++ Va+K ++ +a+e + +  ++e+++mk+lkh niv+l+ v+  e +l++++ey++  dL+k++  + ++ +l
   CDO70913.1   6 LEKLGEGTYATVYKGRSR----TTNEIVALKEIHLDAEEGTPSTAIREISLMKELKHTNIVRLYDVIHTETKLVLIFEYCER-DLKKYMDVHgDRGAL 98 
                  689**************9....89999*****************************************************98.9*****999667899 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwE 197
                  +  ++ sf++q+ kG ++ ++++++Hrdl  +N L++++   k++DfGLar+       ++ +++ + + + ap +l+ ++ ++++ DvWs G +  E
   CDO70913.1  99 DPVTVRSFMYQLLKGTAFCHENRVLHRDLKPQNLLINRKGELKLGDFGLARAF--GVPVNTFSNEVVTLWYRAPDVLMGSRtYSTSIDVWSCGCIFAE 194
                  999**************************************************..44445556666777777****99876599999*********** PP

                  HHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 198 iftlgespypglknee 213
                  +++ g   ++g +n++
   CDO70913.1 195 MIS-GVPLFRGRDNQD 209
                  **9.666666665555 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.1e-05     0.034     105     257 ..       6     151 ..       1     180 [. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
  Haspin_kinase 105 llndseklssevyqtke..kdkevvlKviplevledvtis..kelsl.kelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGt 195
                    l + +e+ +  vy+ ++  +++ v+lK i l++ e    +  +e+sl kelk  ++v+   + +    +  ++ e    y+e +l  +  ++ +G+
     CDO70913.1   6 LEKLGEGTYATVYKGRSrtTNEIVALKEIHLDAEEGTPSTaiREISLmKELKHTNIVRLY-DVIHTETKLVLIFE----YCERDLKKY--MDVHGD 94 
                    555677777888877776566677788888865554433323444444666666666654.33333332222222....344444433..344443 PP

  Haspin_kinase 196 dLeevklkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                            +  ++ s ++q +k  +   ++ +  HRdL+ +n L++++++  l d+ l+R+ 
     CDO70913.1  95 R----GALDPVTVRSFMYQLLKGTAFCHEN-RVLHRDLKPQNLLINRKGELKLGDFGLARAF 151
                    2....2233445666678877766655443.456**************************96 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.1e-06     0.027     151     237 ..     108     189 ..      54     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.1e-06
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgf...aPpEllgsrggytrknktkmthkldaWqlG 237
                   ql++  a  +++ ++h +++++nll ++kg l+lg+f+  +  g  v   s+  +++   aP  l+gs          +++ ++d+W  G
   CDO70913.1 108 YQLLKGTAFCHENRVLHRDLKPQNLLINRKGELKLGDFGLARAFGVPVNTfSNEVVTLwyrAPDVLMGS---------RTYSTSIDVWSCG 189
                  5777778888999*************************9777777666654332233212234344444.........2345566666666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.6e-05      0.17     165     187 ..     119     140 ..      11     150 .. 0.89
   2 ?   -3.0   0.1       1.8   5.5e+03     144     162 ..     254     272 ..     224     287 .. 0.55
   3 ?    4.8   3.2    0.0076        23      88     152 ..     329     391 ..     292     397 .] 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.6e-05
                 -EEEE-SS-SGGGEEEC..TTEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrv 187
                 + ++lH+Dl+p+Nll++ ++g++
  CDO70913.1 119 ENRVLHRDLKPQNLLIN-RKGEL 140
                 6789*************.76766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHH--S CS
         APH 144 lleeleeqvlaalaallpg 162
                  l ++  q+l+ l++ll+ 
  CDO70913.1 254 VLPKASPQALDLLERLLQF 272
                 3334444444444444443 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0076
                 HHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHH CS
         APH  88 aaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqv 152
                  +   +++ +++  +a+l  + +++ p a+++ +++ +++q +++++++ + +++  ++ + +q 
  CDO70913.1 329 VPYPNAAYMQAAHGQAQLALA-QPQIPGAGYGIPYAQQQAQQHAQQQAQQHVQQHA-QQHAQQQY 391
                 444577888899999999999.888********************99999999988.77777664 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  23.9    0.0019       5.6     157     233 ..     315     393 ..     220     397 .] 0.54

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0019
       TFIIA 157 qplqqvvqq.sqgsaaqssvaalqaq.sqqaqalaepqqqlekq.......qqqqqqqqqqqqqq.qvqqqqqeesqqaqqasqeqv 233
                 +++qq++q  +qg++   ++a +qa+  q++ ala+pq     +       +qqq qq++qqq+q +vqq+ q +++q+    q+q+
  CDO70913.1 315 AQAQQQLQApQQGQVPYPNAAYMQAAhGQAQLALAQPQIP---GagygipyAQQQAQQHAQQQAQqHVQQHAQ-QHAQQ----QYQQ 393
                 2223332323677777777777777744444444444444...124556653333444444444423333222.22221....2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2004  (0.111774); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.56
# Mc/sec: 2135.14
//
Query:       CDO70914.1  [L=353]
Description: hypothetical protein BN946_scf184829.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-21   76.5   0.0    8.6e-21   73.7   0.0    2.0  2  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    1.1e-18   68.0   0.0    2.8e-18   66.6   0.0    1.8  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    0.00047   19.0   0.0     0.0014   17.5   0.0    1.6  2  FbpA            Fibronectin-binding protein A N-terminus (Fbp


Domain annotation for each model (and alignments):
>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   1.4e-24   8.6e-21       1      90 [.     160     249 ..     160     252 .. 0.96
   2 ?    0.2   0.0      0.13   7.5e+02      13      32 ..     326     345 ..     317     347 .. 0.79

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.4e-24
                 ---BTTSTTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTTGCC CS
        H2TH   1 LgpeplseaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgksgis 90 
                 Lg +p  +  ++d ++++++k+  +ik+lLLDq+  aG+GN+ adE+L+ a++hPe+  + l++e+l++l++++ +v + a+ ++++ ++
  CDO70914.1 160 LGFDPILSMPDLDDFKKAVRKRSCPIKALLLDQSFSAGVGNWVADEILYHARVHPEERCNVLNDEQLDALYKQTSAVCQTAVSVNADDSK 249
                 899*******************************************************************************99988766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.13
                 HHHHHHHHT--SBHHHHHHC CS
        H2TH  13 dalaerlkkkkrkiktlLLD 32 
                 + +++  +k+krk++t+LL 
  CDO70914.1 326 QKVEKVTRKRKRKVRTVLLH 345
                 45778889999******995 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   4.7e-22   2.8e-18      16     116 .]       2     145 ..       1     145 [. 0.87

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 4.7e-22
                     HHHTT-EEEEEEE-SSHHHTS..THHHHHTT-.SEEEEEEEEETTEEEEEE...EEEEEEE-TTTEEESS.....................T... CS
  Fapy_DNA_glyco  16 rhllgkkiakvevlkdktlrg..spaafakalkgrkiasvgrrGKyllleldg.gevlvvhlgmtGrllik.............eaeeeppk... 91 
                     ++l gk++++ve+ +d+ ++   +++ fa++lkgrk+++++r GK+++l ldg g++ v+h+gmtG+l++k             +++++pp+   
      CDO70914.1   2 PELPGKTVVDVETVEDTIVFSgvTHDGFAAELKGRKVVDAQRYGKVFYLLLDGeGRHPVMHFGMTGMLQVKgqlatyyretprkASTDWPPRfmk 96 
                     5688*********88888888**9***************************8778999************8888888888999899999997666 PP

                     ...................TEEEEEEEG.....GGEEEEEEETT---EE CS
  Fapy_DNA_glyco  92 ...................htkvrleld.....dgtelaFvDpRrfGrv 116
                                        + ++ l+l+     d+ e+aF D+Rr+Grv
      CDO70914.1  97 vhqtafllvfrrfgyslaaYVQFILHLKgdtheDEAEVAFLDARRLGRV 145
                     777778888777777777766677776688899**************97 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.3e-07    0.0014     163     241 ..     158     239 ..     151     269 .. 0.87
   2 ?   -1.7   0.0      0.15   9.1e+02     159     199 ..     309     349 ..     297     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.3e-07
                 XXSXBXTT.SXXH.HHHHHHHHHS.XXXHHHHHHH.B.TTXXHHHHHHHHTTXSSSH...............HHHHHHHHTX CS
        FbpA 163 sqdklnPl.eaeeleefkellskkekdlvkaLvka.f.qGlspllaeelleragldketsakelseedlerlyealqellee 241
                 s+ + +P  +  +l++fk++++k + +++  L+++ f  G+++ +a e+l++a + +e++ + l++e+l++ly++ + +++ 
  CDO70914.1 158 STLGFDPIlSMPDLDDFKKAVRKRSCPIKALLLDQsFsAGVGNWVADEILYHARVHPEERCNVLNDEQLDALYKQTSAVCQT 239
                 555678877889999********889****999653446************************************9998876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.15
                 XXSXXXSXBXTTSXXH.HHHHHHHHHS.XXXHHHHHHHBTT CS
        FbpA 159 elPpsqdklnPleaeeleefkellskkekdlvkaLvkafqG 199
                 e+ p+ + l Pl+ e+ ++++++ +k +++++  L+  ++G
  CDO70914.1 309 EAEPAESDLTPLSGEDDQKVEKVTRKRKRKVRTVLLHDLRG 349
                 67788899999988885699999888889999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.48
# Mc/sec: 2194.31
//
Query:       CDO70915.1  [L=993]
Description: Glycoside Hydrolase Family 16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-08   34.0   0.1     0.0002   20.9   0.0    2.6  2  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
       0.18   11.3   0.1         15    5.1   0.0    2.2  2  RIP             Ribosome inactivating protein
        9.5    5.3  23.2        1.6    7.8   5.3    2.1  2  SOG2            RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.4e-08    0.0002      23      92 ..     192     269 ..     170     287 .. 0.70
   2 !   10.2   0.0   6.4e-05      0.38      31      92 ..     741     799 ..     704     808 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.4e-08
                     EEEEEE.......EEEEEEEECCEESSEEEEEEEE.---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEB CS
  Glyco_hydro_16  23 tltldk.......esgsrikskksflyGkvearik.aaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvyg 92 
                      ++++        +++ ri+++ +++   v  ++  ++++ G+++af+    +++a +EiDi E + nd+ + q ++++
      CDO70915.1 192 IMRVETtgqvsgnRKSVRITTTATYTGALVLLDAVhMPTGCGTWPAFWSNGPNWPAGGEIDIvEGV-NDNLDNQATIHT 269
                     4444444444444556666666666666666665569************9999***********99.666666777775 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.4e-05
                     EEEEEECCEESSEEEEEEEE.---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEB CS
  Glyco_hydro_16  31 gsrikskksflyGkvearik.aaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvyg 92 
                     + ri+++  ++   v  ++  ++++ G++++f+       a +EiDi E + nd    q +v++
      CDO70915.1 741 SVRITTTAVYTGALVLLDALhMPTGCGTWPSFWSNG----ARGEIDIvEGV-NDGAANQATVHS 799
                     455555555554444444435999*********985....89*****9998.777778888885 PP

>> RIP  Ribosome inactivating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0025        15      51      78 ..     302     329 ..     257     335 .. 0.87
   2 ?    3.8   0.0    0.0063        38      54      78 ..     834     858 ..     820     865 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0025
                 S-EEEEEEETTTTEEEEEEETTSEEEES CS
         RIP  51 tssltLalrddnlYlvGFrnrngvwyel 78 
                 ++   +   ++n Y vGF n++g +y +
  CDO70915.1 302 NAGCGMTATQSNTYGVGFNNNGGGVYAM 329
                 55556677899***********988876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0063
                 EEEEEETTTTEEEEEEETTSEEEES CS
         RIP  54 ltLalrddnlYlvGFrnrngvwyel 78 
                   ++  ++n Y vGF +++g +y +
  CDO70915.1 834 CGIVATQSNTYGVGFNSNGGGVYAM 858
                 56778899***********988876 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  10.0    0.0062        37     200     317 ..      27     137 ..      14     226 .. 0.43
   2 ?    7.8   5.3   0.00028       1.6     264     322 ..     608     664 ..     577     721 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0062
        SOG2 200 esrassvtytart...RhagsfsaqdveqGaaltplrsdqipfnlsrsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstspp.ga 294
                 +s++s  + + r+   R+ g+ +  d+ +  +   ++        ++  + s++++   p++ +++s+ s  s s+  ++ss  s+  +++s s++ +a
  CDO70915.1  27 RSSESIAK-VHRRaakRSEGLAK--DLRRAFNGMLFQ--------QQLDNGSPQKAYCVPSEGMKNSNGSGGSGSNGTSSSSIGSSASSTASASSSgSA 114
                 33332222.33323457777665..333322222111........112222233333333333333333332222211222222222222222223344 PP

        SOG2 295 lsrqslsttgststltsssksrs 317
                 ++++++s+t+s s+++s s+ +s
  CDO70915.1 115 KQSPTASGTSSASSPSSTSSGSS 137
                 44444444433333333322222 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00028
        SOG2 264 etsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsn 322
                 ++s +s+sss  ++ sa+++P ++ sts+   + ++s s++g+++++ts ++   s ++n
  CDO70915.1 608 SSSSSSSSSSSnSTASAPTSPASSVSTSA---TDSASSSGPGASPPPTSTASAVRSPSAN 664
                 22222222222233444444444444444...2333334455555555444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.52
# Mc/sec: 5750.03
//
Query:       CDO70916.1  [L=541]
Description: hypothetical protein BN946_scf184829.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-34  115.9   0.5    1.6e-33  114.9   0.5    1.5  1  SprT-like       SprT-like family
     0.0095   15.8   2.1       0.64   10.0   0.6    2.8  2  Zn_ribbon_SprT  SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.5   1.8e-37   1.6e-33       2     113 .]     339     448 ..     338     448 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 1.8e-37
   SprT-like   2 eelfkklddavfggqaaggvkiiwskrlnttaGranlkr.atvrhhasIeLseklldsrsedrllntLaHElcHlalfvisgvrnnpHGaeFkawaakv 99 
                  ++fk+l+++vfgg+  ++ ++ wskrl ttaGran+++ + +rh ++I+L+ek+ld   e+r++ntL HE+cHla++visg+ +++HG+ Fk+wa++v
  CDO70916.1 339 TSFFKELNETVFGGKLPESTELVWSKRLLTTAGRANWRKdRDGRHITHIQLAEKILDC--EERIRNTLSHEMCHLACWVISGEPEEQHGPIFKNWARQV 435
                 78*************99********************996788999************..**********************99*************** PP

   SprT-like 100 ekalaarleittkh 113
                  +   +++eitt+h
  CDO70916.1 436 MRKR-RDVEITTRH 448
                 9997.*******99 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0045        40      15      37 ..      63     113 ..      60     114 .. 0.85
   2 !   10.0   0.6   7.2e-05      0.64       1      20 [.     454     473 ..     454     479 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0045
  Zn_ribbon_SprT  15 thhlsirrhn............................YrCrrCkgtLrgk 37 
                     ++++++r+ +                              C +C+++ +++
      CDO70916.1  63 ERQRRVRTKRavlanvnvnqlrvieisdsededasgmlAKCACCRSEGSFT 113
                     6899999999999999999999999999999999999999*****998876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 7.2e-05
  Zn_ribbon_SprT   1 kkyvYrCtgCgreythhlsi 20 
                     +ky ++C +C++ y++h+++
      CDO70916.1 454 HKYRWKCEDCDKVYGRHSKS 473
                     59****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.54
# Mc/sec: 3011.55
//
Query:       CDO70917.1  [L=469]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-06   26.3   0.0    9.6e-06   25.2   0.0    1.5  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.4e-10   9.6e-06      28      92 ..     219     291 ..     193     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.4e-10
                     E.......EEEEEEEECCEESSEEEEEEEE.---STTEEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEB CS
  Glyco_hydro_16  28 k.......esgsrikskksflyGkvearik.aaksaGvvtafylssedekahdEiDi.EflGndtgkvqtnvyg 92 
                             +++ ri++++s++ G +  ++  ++++ G+++af+    +++a +EiD+ E + nd ++ q ++++
      CDO70917.1 219 TtptvsqyRKSIRITTQYSYTGGLIVLDAVhMPTGCGTWPAFWSNGPNWPAGGEIDMvEGV-NDYTNNQVTLHT 291
                     333444435699***********99998777*************9999*********9*99.888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.52
# Mc/sec: 2734.05
//
Query:       CDO70918.1  [L=636]
Description: hypothetical protein BN946_scf184829.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-72  236.6  28.7    5.1e-13   48.6   0.1   11.2 11  Arm              Armadillo/beta-catenin-like repeat
    9.4e-21   73.9  11.5     0.0023   18.4   0.3    8.1  8  HEAT_EZ          HEAT-like repeat
    3.4e-16   59.4   7.3    0.00025   21.4   0.3    7.6  8  HEAT_2           HEAT repeats
    4.7e-16   57.5  12.8       0.19   12.1   0.0    9.5  9  HEAT             HEAT repeat
    2.5e-09   36.3  12.2    1.6e-05   23.7   0.1    3.0  3  Adaptin_N        Adaptin N terminal region
      4e-09   36.3  10.5     0.0029   17.1   1.9    3.7  4  Arm_2            Armadillo-like
    1.2e-08   34.6   5.6      0.002   17.5   6.5    4.4  3  V-ATPase_H_N     V-ATPase subunit H
    1.4e-08   33.4   1.1    3.5e-08   32.1   0.7    1.7  2  KAP              Kinesin-associated protein (KAP)
    1.2e-07   31.9   4.9      0.025   14.6   0.7    5.1  5  Cnd1             non-SMC mitotic condensation complex subunit
    0.00011   22.3   1.2         28    4.9   0.1    5.2  6  V-ATPase_H_C     V-ATPase subunit H
    0.00012   22.0   8.3        2.1    8.3   0.0    4.0  3  DUF3361          Domain of unknown function (DUF3361)
  ------ inclusion threshold ------
      0.016   15.1   5.4         12    5.9   0.0    3.8  4  UNC45-central    Myosin-binding striated muscle assembly cent
      0.021   15.4   0.0        1.9    9.1   0.0    3.1  3  Vac14_Fab1_bd    Vacuolar 14 Fab1-binding region
      0.077   13.7  11.4         59    4.8   0.2    7.2  7  HEAT_PBS         PBS lyase HEAT-like repeat
       0.27   11.3   6.1       0.31   11.1   0.2    3.7  5  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
          4    7.9   5.5         31    5.0   0.6    4.0  4  RasGEF_N_2       Rapamycin-insensitive companion of mTOR RasG


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.18     2e+02      18      40 ..      56      78 ..      50      79 .. 0.75
   2 !   18.4   0.0   1.5e-06    0.0017      14      40 ..      90     116 ..      87     117 .. 0.93
   3 !   39.4   0.3   3.5e-13   3.9e-10       1      40 [.     118     157 ..     118     158 .. 0.97
   4 !   27.6   0.0   1.8e-09     2e-06       2      40 ..     178     216 ..     177     217 .. 0.95
   5 !   48.6   0.1   4.5e-16   5.1e-13       1      40 [.     218     257 ..     218     258 .. 0.97
   6 !   25.6   0.2   7.8e-09   8.8e-06      10      41 .]     270     301 ..     261     301 .. 0.86
   7 !   10.0   0.1   0.00065      0.73       4      40 ..     305     341 ..     302     342 .. 0.91
   8 !   33.9   0.0   1.9e-11   2.1e-08       2      41 .]     344     384 ..     343     384 .. 0.95
   9 !   11.5   0.1   0.00022      0.25       2      40 ..     387     425 ..     385     426 .. 0.91
  10 !   26.3   0.1   4.8e-09   5.4e-06       2      41 .]     428     467 ..     427     467 .. 0.94
  11 ?    5.5   0.0     0.016        18      17      39 ..     495     517 ..     493     519 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.18
                HHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm 18 vrLLs.sedeevqeeAawALsNLa 40
                 +L s s+++++q+ Aa A + ++
  CDO70918.1 56 TTL-SfSDNVDLQRSAALAFAEIT 78
                333.36***********9988775 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.5e-06
                 HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLa 40 
                 ++p + LL s d+evq++A +AL+NLa
  CDO70918.1  90 LDPILFLLGSHDTEVQRAASAALGNLA 116
                 688999********************8 PP

  == domain 3  score: 39.4 bits;  conditional E-value: 3.5e-13
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n enk +++++G+++pL+r + s+++evq++A+++++NLa
  CDO70918.1 118 NTENKLLIVKLGGLEPLIRQMLSPNVEVQCNAVGCVTNLA 157
                 689************************************9 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 1.8e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++nk  + ++Ga+ pL rL +s+d +vq++A++AL N++
  CDO70918.1 178 DDNKTKIAKSGALVPLTRLARSKDMRVQRNATGALLNMT 216
                 689999*******************************97 PP

  == domain 5  score: 48.6 bits;  conditional E-value: 4.5e-16
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++en++++++aGa+p+Lv+LL+s+d++vq  +++ALsN+a
  CDO70918.1 218 SDENRQQLVNAGAIPVLVSLLNSPDTDVQYYCTTALSNIA 257
                 689************************************8 PP

  == domain 6  score: 25.6 bits;  conditional E-value: 7.8e-09
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 e   v  Lv+L++s++ +vq++Aa AL+NLa+
  CDO70918.1 270 EPKLVSSLVQLMDSPSLKVQCQAALALRNLAS 301
                 6667899***********************96 PP

  == domain 7  score: 10.0 bits;  conditional E-value: 0.00065
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                    ++++a ++  L+rLL+s+   +   Aa++++N +
  CDO70918.1 305 YQLEIVKADGLTSLLRLLQSTYLPLILSAAACVRNVS 341
                 56789******************************76 PP

  == domain 8  score: 33.9 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 ++n   +ie+G ++pL++LLs  e+eevq+ A ++L+NLaa
  CDO70918.1 344 PQNESPIIESGFLQPLINLLSfKENEEVQCHAISTLRNLAA 384
                 678889*********************************96 PP

  == domain 9  score: 11.5 bits;  conditional E-value: 0.00022
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++nk+a+++aGav+   +L      +vq e +++++ La
  CDO70918.1 387 EKNKQAIVKAGAVESIKELVLEVPMNVQSEMTACIAVLA 425
                 67****************************999998776 PP

  == domain 10  score: 26.3 bits;  conditional E-value: 4.8e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +e k ++ e+G+ ++L+ L +s++ evq ++a+AL+NL+a
  CDO70918.1 428 EELKGQLLEMGICEVLIPLTNSPSSEVQGNSAAALGNLSA 467
                 6788999*******************************96 PP

  == domain 11  score: 5.5 bits;  conditional E-value: 0.016
                 HHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawALsNL 39 
                 L r+L+s d + q+ A+w++  L
  CDO70918.1 495 LYRFLTSSDATFQHIAVWTIVQL 517
                 6799***************9655 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   5.9e-05     0.066       3      55 .]      66     115 ..      64     115 .. 0.91
   2 !   18.4   0.3     2e-06    0.0023       2      55 .]     103     156 ..     102     156 .. 0.94
   3 ?    0.8   0.1      0.67   7.6e+02      32      52 ..     192     212 ..     185     215 .. 0.83
   4 !   15.1   0.0   2.2e-05     0.024       3      55 .]     204     256 ..     202     256 .. 0.77
   5 !   17.0   0.3   5.7e-06    0.0064      17      55 .]     261     299 ..     257     299 .. 0.91
   6 ?    5.5   0.0     0.022        25      29      55 .]     355     382 ..     332     382 .. 0.86
   7 !   13.9   0.1   5.4e-05      0.06      17      55 .]     427     465 ..     412     465 .. 0.79
   8 ?    0.7   0.0      0.69   7.7e+02      29      53 ..     495     515 ..     488     517 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.9e-05
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 ++r+Aa+a+++  + + ++  ++ ++ il +L+     ++d eV+ aA  aLgnl
  CDO70918.1  66 LQRSAALAFAEiTEKEVRPVGRDTLDPILFLLG-----SHDtEVQRAASAALGNL 115
                 79*******999999999999999999999999.....9999***********97 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2e-06
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +v+raA +aLG+la++  + l  +    l +L++ + +++ eV+++A+g+ +nl
  CDO70918.1 103 EVQRAASAALGNLAVNTENKLLIVKLGGLEPLIRQMLSPNVEVQCNAVGCVTNL 156
                 69******************999999999999999999999*********9886 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.67
     HEAT_EZ  32 aLlalLnddsdeVRaaAagaL 52 
                 +L +l ++++ +V+ +A gaL
  CDO70918.1 192 PLTRLARSKDMRVQRNATGAL 212
                 67888999999**99999998 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 2.2e-05
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 v+r+A  aL ++     + +q++   ++p L++lLn+++ +V++++  aL+n+
  CDO70918.1 204 VQRNATGALLNMTHSDENRQQLVNAGAIPVLVSLLNSPDTDVQYYCTTALSNI 256
                 566666655444455556666666889************************97 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 5.7e-06
     HEAT_EZ  17 gepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++  l++  p+++  L++l+ ++s +V+++Aa aL+nl
  CDO70918.1 261 HNRKKLAQTEPKLVSSLVQLMDSPSLKVQCQAALALRNL 299
                 678889999*********99999999***********97 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.022
     HEAT_EZ  29 ilpaLlalLnddsd.eVRaaAagaLgnl 55 
                  l +L++lL+ ++  eV++ A+ +L+nl
  CDO70918.1 355 FLQPLINLLSFKENeEVQCHAISTLRNL 382
                 6789*****998888**********997 PP

  == domain 7  score: 13.9 bits;  conditional E-value: 5.4e-05
     HEAT_EZ  17 gepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  e    q+l   i   L++l n++s+eV++++a aLgnl
  CDO70918.1 427 SEELKGQLLEMGICEVLIPLTNSPSSEVQGNSAAALGNL 465
                 4555566666677789*********************97 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.69
     HEAT_EZ  29 ilpaLlalLnddsdeV.RaaAagaLg 53 
                 + ++L      +sd++ +  A++++ 
  CDO70918.1 495 LYRFLT-----SSDATfQHIAVWTIV 515
                 444455.....566555******985 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.12   1.3e+02      31      65 ..      50      84 ..      26      90 .. 0.71
   2 !   13.6   0.2     6e-05     0.067       7      61 ..      57     118 ..      51     128 .. 0.80
   3 !    8.1   0.1    0.0032       3.6      30      60 ..     178     217 ..     131     228 .. 0.59
   4 !   21.4   0.3   2.3e-07   0.00025       7      87 ..     195     296 ..     192     297 .. 0.76
   5 !   18.9   0.1   1.3e-06    0.0015       1      64 [.     231     305 ..     231     335 .. 0.78
   6 ?    6.2   0.0     0.012        13       2      59 ..     357     383 ..     343     408 .. 0.65
   7 !    6.8   0.0    0.0078       8.8      26      60 ..     433     467 ..     412     494 .. 0.69
   8 ?    5.1   0.0     0.026        30       4      30 ..     443     468 ..     440     531 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.12
      HEAT_2 31 ealpaLvellededpavRraaaeaLgaigdpealp 65
                + l+aL+ l  +++ + +r aa a ++i ++e+ p
  CDO70918.1 50 SPLAALTTLSFSDNVDLQRSAALAFAEITEKEVRP 84
                56999999999999999999999999998877655 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6e-05
      HEAT_2   7 alendpdpevrraairaLgrignp.......ealpaLvellededpavRraaaeaLgaigdp 61 
                  l+ + + +++r a+ a ++i ++       ++l+ ++ ll ++d++v+raa  aLg ++ +
  CDO70918.1  57 TLSFSDNVDLQRSAALAFAEITEKevrpvgrDTLDPILFLLGSHDTEVQRAASAALGNLAVN 118
                 35458899999********99887555666677************************88644 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0032
      HEAT_2  30 p.........ealpaLvellededpavRraaaeaLgaigd 60 
                 +          al  L++l++++d++v+r+a  aL  + +
  CDO70918.1 178 DdnktkiaksGALVPLTRLARSKDMRVQRNATGALLNMTH 217
                 044444444478999*****************99977753 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 2.3e-07
      HEAT_2   7 alendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaig............dpealpaLkellddddddvvReaA 83 
                 +l++++d  v+r+a  aL           ++ n  a+p Lv+ll+++d++v++   +aL+ i+            +p+ +++L +l+d+ ++  v+ +A
  CDO70918.1 195 RLARSKDMRVQRNATGALLnmthsdenrqQLVNAGAIPVLVSLLNSPDTDVQYYCTTALSNIAvdahnrkklaqtEPKLVSSLVQLMDS-PSLKVQCQA 292
                 566899999999999999955555544444445599************************984444444455555799*********76.567779999 PP

      HEAT_2  84 aeaL 87 
                 a aL
  CDO70918.1 293 ALAL 296
                 9988 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 1.3e-06
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.......rignp........ealpaLvellededpavRraaaeaLgaigdpeal 64 
                 +++L+++l n+pd++v++    aL        +   +        +++  Lv+l+++++  v+ +aa aL  ++++e +
  CDO70918.1 231 IPVLVSLL-NSPDTDVQYYCTTALSniavdahN---RkklaqtepKLVSSLVQLMDSPSLKVQCQAALALRNLASDEKY 305
                 58899999.9*******9999999955565540...14445555599***********************999876644 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.012
      HEAT_2   2 daLlqalendpdpevrraairaLgrignpealpaLvellededpavRraaaeaLgaig 59 
                 ++L+++l+  +++ev+ +ai +L ++                               +
  CDO70918.1 357 QPLINLLSFKENEEVQCHAISTLRNL-------------------------------A 383
                 45666665566666666666666543...............................2 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0078
      HEAT_2  26 rignpealpaLvellededpavRraaaeaLgaigd 60 
                 ++ +  + + L++l ++++++v+ + a aLg +  
  CDO70918.1 433 QLLEMGICEVLIPLTNSPSSEVQGNSAAALGNLSA 467
                 56666788999999999999999999999998853 PP

  == domain 8  score: 5.1 bits;  conditional E-value: 0.026
      HEAT_2   4 LlqalendpdpevrraairaLgrignp 30 
                 L+ +  n+p+ ev+ + + aLg++  +
  CDO70918.1 443 LIPLT-NSPSSEVQGNSAAALGNLSAK 468
                 44544.666666666666666643332 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.55   6.2e+02       7      26 ..      57      76 ..      52      80 .. 0.53
   2 !    9.1   0.0    0.0016       1.8       3      28 ..      91     116 ..      90     118 .. 0.90
   3 !    9.1   0.0    0.0015       1.7       3      30 ..     133     159 ..     131     160 .. 0.86
   4 ?    2.3   0.0      0.23   2.6e+02       5      27 ..     193     215 ..     190     217 .. 0.83
   5 !   12.1   0.0   0.00017      0.19       2      28 ..     231     257 ..     230     258 .. 0.96
   6 !   11.1   0.4   0.00035      0.39       1      29 [.     273     301 ..     273     302 .. 0.92
   7 ?    1.7   0.0      0.37   4.2e+02       2      29 ..     356     384 ..     355     386 .. 0.83
   8 !    8.2   0.0    0.0029       3.3       3      28 ..     441     466 ..     439     468 .. 0.89
   9 ?   -0.1   0.0       1.4   1.6e+03       7      29 ..     497     519 ..     493     520 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.55
                HHH.T-SSHHHHHHHHHHHHH CS
        HEAT  7 kll.sDpspeVReaAakaLga 26
                +l  sD+   +R +Aa+a+++
  CDO70918.1 57 TLSfSDNVDLQR-SAALAFAE 76
                554255555555.55555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0016
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 +++l ll + + eV +aA  aLg+la
  CDO70918.1  91 DPILFLLGSHDTEVQRAASAALGNLA 116
                 6788899*****************98 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0015
                 HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalaev 30 
                 Pl+ ++l +p+ eV ++A+ ++++la +
  CDO70918.1 133 PLIRQML-SPNVEVQCNAVGCVTNLATH 159
                 6777776.*****************975 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.23
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 l +l ++++++V ++A  aL ++
  CDO70918.1 193 LTRLARSKDMRVQRNATGALLNM 215
                 577889**********9999765 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 0.00017
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P+l++ll++p+ +V + +  aL ++a
  CDO70918.1 231 IPVLVSLLNSPDTDVQYYCTTALSNIA 257
                 8***********************997 PP

  == domain 6  score: 11.1 bits;  conditional E-value: 0.00035
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+  l++l+ +ps +V + Aa+aL +la+
  CDO70918.1 273 LVSSLVQLMDSPSLKVQCQAALALRNLAS 301
                 577899*99******************97 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.37
                 HHHHHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkll.sDpspeVReaAakaLgalae 29 
                 l +l++ll   ++ eV + A+ +L +la 
  CDO70918.1 356 LQPLINLLsFKENEEVQCHAISTLRNLAA 384
                 6677888767799************9985 PP

  == domain 8  score: 8.2 bits;  conditional E-value: 0.0029
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                  +l+ l ++ps+eV  ++a aLg+l+
  CDO70918.1 441 EVLIPLTNSPSSEVQGNSAAALGNLS 466
                 6799999*****************97 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 1.4
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                 + l+++++     A++++++l+e
  CDO70918.1 497 RFLTSSDATFQHIAVWTIVQLLE 519
                 5677888888899*******987 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.4e-08   1.6e-05     129     295 ..      65     257 ..      48     263 .. 0.78
   2 !   13.9   5.5   1.4e-05     0.015     113     285 ..     271     456 ..     263     477 .. 0.79
   3 ?    0.8   0.0      0.12   1.4e+02     272     307 ..     495     530 ..     491     539 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH..HCCCCCCC...HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---S CS
   Adaptin_N 129 yvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei..kkndrlll...kllpklvrrLcnllteldpwlqvkiiklltrlarq 222
                  ++++Aala++ + +k+   + ++ ++ i  ll ++d+ v++aA a+l  +  + +++ll+     l+ l+r++     +++   q+  + ++t+la +
  CDO70918.1  65 DLQRSAALAFAEITEKEVRPVGRDTLDPILFLLGSHDTEVQRAASAALGNLavNTENKLLIvklGGLEPLIRQML----SPNVEVQCNAVGCVTNLATH 159
                 6889************999998888**************************765555555564433555555555....77777888888888888887 PP

                 SHHHH......................HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHH CS
   Adaptin_N 223 epeer....................skkellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllkiv 295
                  + +                     +k+  l  l+ l +s+ + V  ++  ++ ++  ++e     ++  a+ +Lv+ll s+d+ ++y   ++l+ i+
  CDO70918.1 160 GKTSIhvhsrygltqhleddnktkiAKSGALVPLTRLARSKDMRVQRNATGALLNMTHSDEnrqqlVNAGAIPVLVSLLNSPDTDVQYYCTTALSNIA 257
                 776666666666666666665554433889999999999************99988887776667666668889**************9999998886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT...T-SSHHHHHHHHHHHHHH...HCCCCCCC..HHHHHHHCCHHHHHHC CS
   Adaptin_N 113 edlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell...sdkdpgvvlaAvalleei...kkndrlll..kllpklvrrLcnllte 203
                 ++l+  + +l+ ++s  v+ +Aala+  l + ++ +l+   ++ +++ll   +++   ++l+A a    +    +n+   +    l+ l++ L+     
  CDO70918.1 271 PKLVSSLVQLMDSPSLKVQCQAALALRNLASDEKYQLEIVKADGLTSLLrllQSTYLPLILSAAACVRNVsihPQNESPIIesGFLQPLINLLS---FK 366
                 6788889999999999999*******99999988877654244444444443999988888888888888445333333336677777777777...99 PP

                 S-HHHHHHHHHHHCC---SSHHHH.....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHH CS
   Adaptin_N 204 ldpwlqvkiiklltrlarqepeersk...kellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlry 285
                  ++  q+  i++l++la++ ++ ++    +  +es+++l+  + + V  e+  +i  la + e     l + ++++L+ l  s+   ++ 
  CDO70918.1 367 ENEEVQCHAISTLRNLAASSEKNKQAivkAGAVESIKELVLEVPMNVQSEMTACIAVLALSEElkgqlLEMGICEVLIPLTNSPSSEVQG 456
                 ******************9999996688899*************************9999999889977778999999999988877775 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.12
                 HHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTC CS
   Adaptin_N 272 LvrllsskdenlryvaLrtllkivkkepkavqhldl 307
                 L r+l+s+d   + +a+ t+++++++  + +++ +l
  CDO70918.1 495 LYRFLTSSDATFQHIAVWTIVQLLESGGNNIRNSNL 530
                 899********************9998777776665 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.7e-05     0.086      18      84 ..      94     159 ..      82     171 .. 0.84
   2 !   10.7   0.5   0.00023      0.25      21     185 ..     196     282 ..     189     311 .. 0.58
   3 !   17.1   1.9   2.6e-06    0.0029       8     114 ..     309     418 ..     301     473 .. 0.78
   4 ?   -3.7   0.0       5.7   6.4e+03     138     154 ..     513     529 ..     505     532 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
       Arm_2  18 lalLkssedpliqeialltlgnsaaysvnqdiirdlggi.tiianllsksnaevkekalnalnnlsen 84 
                 l lL  s+d  +q++a  +lgn a+ + n+ +i +lgg+ ++i ++ls +n ev+ +a+  + nl++ 
  CDO70918.1  94 LFLL-GSHDTEVQRAASAALGNLAVNTENKLLIVKLGGLePLIRQMLS-PNVEVQCNAVGCVTNLATH 159
                 4444.5899*****************************9578888887.89********999998765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00023
       Arm_2  21 LkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsevQlagLkll 119
                 L  s+d  +q+ a+ +l n      n++ + + g i+++ +ll++++  v+    +al n ++ ++n kk+    ++++                    
  CDO70918.1 196 LARSKDMRVQRNATGALLNMTHSDENRQQLVNAGAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAHNRKKLAQTEPKLV-------------------- 274
                 5666666666666666666666666666666666666666666666666666666666666666666666555444444.................... PP

       Arm_2 120 tnlsvtneyqhllvsyisellsLLskGnekikvqvLkvllnlseNpamtrellsakvlssllslfn 185
                                                                           ssl+ l +
  CDO70918.1 275 ----------------------------------------------------------SSLVQLMD 282
                 ..........................................................34443333 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 2.6e-06
       Arm_2   8 vLepkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsk.snaevkekalnalnnlsenvenqkkikv...yvnqvckdi 102
                 + ++  l  ll lL+s+  pli  +a   + n   ++ n+  i + g +  + nlls+ +n+ev+ +a+++l nl+ ++e++k+  v    v+ + + +
  CDO70918.1 309 IVKADGLTSLLRLLQSTYLPLILSAAAC-VRNVSIHPQNESPIIESGFLQPLINLLSFkENEEVQCHAISTLRNLAASSEKNKQAIVkagAVESIKELV 406
                 56788899***************98875.689999*************99999999961578899*********9988887776544123578888888 PP

       Arm_2 103 vssplNsevQla 114
                 +  p+N +  + 
  CDO70918.1 407 LEVPMNVQSEMT 418
                 899999776655 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 5.7
       Arm_2 138 ellsLLskGnekikvqv 154
                 ++++LL +G+++i++  
  CDO70918.1 513 TIVQLLESGGNNIRNSN 529
                 56899999999999765 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.2e-05      0.08      80     217 ..      60     249 ..       6     253 .. 0.70
   2 !   17.5   6.5   1.8e-06     0.002     102     294 ..     221     405 ..     196     462 .. 0.85
   3 ?    4.4   0.0     0.018        20      93     160 ..     479     544 ..     469     584 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
  V-ATPase_H_N  80 idDllsedksrvelflslakkeeqd....pwkpflkllnrqddfivllalrllakllvqgkkksnklv....esaLnrllqlLssqlss........ 160
                   ++D ++ ++s + +f+++ +ke +      ++p+l ll + d  +++ a+  l +l+v  ++k   ++    e +++++l+                
    CDO70918.1  60 FSDNVDLQRSAALAFAEITEKEVRPvgrdTLDPILFLLGSHDTEVQRAASAALGNLAVNTENKLLIVKlgglEPLIRQMLS-------Pnvevqcna 149
                   555566666666666666666655456668888888888888888888888888888887777777443333333333333.......222224445 PP

  V-ATPase_H_N 161 ..................................................stnevieiavrllqellrtkeyRelfveadgvstlisilrstvanst 207
                                                                     ++  v+  a+ +l ++ +++e R+++v+a  +++l+s+l       +
    CDO70918.1 150 vgcvtnlathgktsihvhsrygltqhleddnktkiaksgalvpltrlarsKDMRVQRNATGALLNMTHSDENRQQLVNAGAIPVLVSLL-------N 239
                   77788888888888888888888888888888888888888888888888889999*********************************.......8 PP

  V-ATPase_H_N 208 rvgiQlqYqv 217
                   + ++++qY+ 
    CDO70918.1 240 SPDTDVQYYC 249
                   8999999985 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.8e-06
  V-ATPase_H_N 102 eqd......pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgv 192
                   +++       + +++ lln++d  ++  + + l +++v ++++++    +  ++l+++L ++++s++++v+  a+ +l +l++ ++y   +v+adg+
    CDO70918.1 221 NRQqlvnagAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAHNRKKL--AQTEPKLVSSLVQLMDSPSLKVQCQAALALRNLASDEKYQLEIVKADGL 315
                   2224566655666777***********************9999998..6777********************************************* PP

  V-ATPase_H_N 193 stlisilrstvanstrvgiQlqYqvllclWlLsFekkiaeelvkkkelipllvdilrdsvKEKvtRvilatlrNllekaeksskelaavmvqvkllk 289
                     l+++l       +++ + l+  +  c+  +s  ++    + ++  +++ l+++l+    E v   +++tlrNl ++ ek+    ++++v+ ++++
    CDO70918.1 316 TSLLRLL-------QSTYLPLILSAAACVRNVSIHPQNESPIIESG-FLQPLINLLSFKENEEVQCHAISTLRNLAASSEKN----KQAIVKAGAVE 400
                   *******.......67788999999999999999999999999998.99999999999999999999999999999999965....66666666666 PP

  V-ATPase_H_N 290 llenL 294
                    ++ L
    CDO70918.1 401 SIKEL 405
                   55554 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.018
  V-ATPase_H_N  93 lflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlss 160
                   +f ++ +k ++ +  +++++l+++d+ ++++a+  +++ll  g ++  +  +++L   ++lL ++ +s
    CDO70918.1 479 AFNDVWDKPDGGMHRYLYRFLTSSDATFQHIAVWTIVQLLESGGNNIRN--SNLLIPNIRLLAETRTS 544
                   5666666677767788888************************999999..78887777777775555 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.45   5.1e+02     512     546 ..     109     143 ..      95     160 .. 0.71
   2 !   32.1   0.7   3.1e-11   3.5e-08     321     542 ..     178     406 ..     171     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.45
         KAP 512 lgilanlaltdldyelilkefklvpyikeklkpga 546
                    l+nla+   +  li+k  +l p i+++l p  
  CDO70918.1 109 SAALGNLAVNTENKLLIVKLGGLEPLIRQMLSPNV 143
                 45677777777777777777778888888887765 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 3.1e-11
         KAP 321 venkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalla..ddkhklialkvlyhvslddkvksmftytdc.iqml 416
                  +nk ++a+   +  l++l +s+   + + +   lln++   + r++++++g +p lv ll+  d + +  + + l  +++d + +  +++t+  +   
  CDO70918.1 178 DDNKTKIAKSGALVPLTRLARSKDMRVQRNATGALLNMTHSDENRQQLVNAGAIPVLVSLLNspDTDVQYYCTTALSNIAVDAHNRKKLAQTEPkLVSS 276
                 589999999999999*******9999999999999**************************93334556677889****************99523334 PP

         KAP 417 mkallesldekvdlelialcinlalnkrnaqlivegnglkllmkralkfkdalllk...llrnlsqhdgslklqfid..yvgdlarilkesddeelvve 510
                 +  l++s++ kv+ +      nla + +    iv+ +gl +l++       +l+l     +rn+s h    +  +i+  ++  l ++l+ +++ee+   
  CDO70918.1 277 LVQLMDSPSLKVQCQAALALRNLASDEKYQLEIVKADGLTSLLRLLQSTYLPLILSaaaCVRNVSIHP-QNESPIIEsgFLQPLINLLSFKENEEVQCH 374
                 4567899999**9997666679***9999999***********988888889988533379******8.566666764589****************** PP

         KAP 511 clgilanlaltdldyelilkefklvpyikekl 542
                 ++ +l nla +    ++ + + + v  ike +
  CDO70918.1 375 AISTLRNLAASSEKNKQAIVKAGAVESIKELV 406
                 *********99888888887788888888765 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.59   6.6e+02      38      92 ..      67     122 ..      54     128 .. 0.74
   2 ?    3.8   0.0     0.048        53      24      72 ..     132     181 ..     129     190 .. 0.74
   3 !   14.6   0.7   2.2e-05     0.025      24     132 ..     191     305 ..     187     313 .. 0.84
   4 ?    5.0   0.0     0.021        23      41      92 ..     333     389 ..     331     416 .. 0.77
   5 ?    4.3   0.0     0.034        39      39      93 ..     417     473 ..     411     504 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.59
        Cnd1  38 RktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteiseksena 92 
                 ++ aa+++a++ ++++  +    l+ ++ ll  ++++V+  a aal +++ ++en+
  CDO70918.1  67 QRSAALAFAEITEKEVRPVGRdTLDPILFLLGSHDTEVQRAASAALGNLAVNTENK 122
                 66777777887777776665558888888888889999999999998888875555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.048
        Cnd1  24 epLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDenp 72 
                 epL +++  ++  V+ +a+ +v++L +++           l + leD+n+
  CDO70918.1 132 EPLIRQMLSPNVEVQCNAVGCVTNLATHGKTSIHVhSRYGLTQHLEDDNK 181
                 7888889999***************6665433333256677778877775 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.2e-05
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteisek..senaiynllpdiisklsdalnecsewgq 116
                  pL++  + +d+ V+++a  +++++     +++   + g +  l +ll+ +++ V+  + +al++i+    + +++ +  p+++s+l++ +++ s + q
  CDO70918.1 191 VPLTRLARSKDMRVQRNATGALLNMthsdENRQQLVNAGAIPVLVSLLNSPDTDVQYYCTTALSNIAVDahNRKKLAQTEPKLVSSLVQLMDSPSLKVQ 289
                 589999999****************76555566899999****************************9977778999***********98888888888 PP

        Cnd1 117 itilefLlsyipkdkq 132
                 ++   +L +  +++k 
  CDO70918.1 290 CQAALALRNLASDEKY 305
                 7777777666666655 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.021
        Cnd1  41 aaivvakL.ilnd...mvkekgflselakll.eDenprVvanalaalteiseksena 92 
                 aa +v ++ i+++    ++e+gfl+ l +ll   en++V+  a++ l +++  se++
  CDO70918.1 333 AAACVRNVsIHPQnesPIIESGFLQPLINLLsFKENEEVQCHAISTLRNLAASSEKN 389
                 78888888855443348**************7799**************99884322 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.034
        Cnd1  39 ktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksenai 93 
                 +ta i+v+ L   l++   e g+ + l  l + ++++V+ n+ aal ++s k+++++
  CDO70918.1 417 MTACIAVLALseELKGQLLEMGICEVLIPLTNSPSSEVQGNSAAALGNLSAKDGRTT 473
                 578888888877777789999*******************************86554 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.066        74      51     112 ..      97     156 ..      87     160 .. 0.80
   2 ?    4.7   0.0     0.028        31      69     112 ..     214     256 ..     173     261 .. 0.68
   3 ?    2.2   0.1      0.16   1.8e+02      31      69 ..     261     295 ..     260     340 .. 0.69
   4 ?    4.5   0.0     0.032        36      45     112 ..     316     382 ..     301     386 .. 0.66
   5 ?    4.9   0.1     0.025        28      44     108 ..     356     420 ..     346     428 .. 0.76
   6 ?   -2.5   0.0       4.7   5.3e+03      45      72 ..     493     519 ..     485     528 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.066
  V-ATPase_H_C  51 leeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   l  s+d++v+  a   +g+l+ +  e k ++ kl++ e +++ + +++ ev+ +A  +v +l
    CDO70918.1  97 L-GSHDTEVQRAASAALGNLAVN-TENKLLIVKLGGLEPLIRQMLSPNVEVQCNAVGCVTNL 156
                   4.467777778888888888777.56677788999999999*****************9887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.028
  V-ATPase_H_C  69 elvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   +++ + +e ++ l + +a  ++++ll+++d++v+y   +a++++
    CDO70918.1 214 NMT-HSDENRQQLVNAGAIPVLVSLLNSPDTDVQYYCTTALSNI 256
                   333.44567777778899999**************998888876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.16
  V-ATPase_H_C  31 enaekleeknfkllkkLiklleeskdktvlavalnDige 69 
                   +n +kl + + kl+++L++l++    + +l v ++    
    CDO70918.1 261 HNRKKLAQTEPKLVSSLVQLMD----SPSLKVQCQAALA 295
                   5788999999999999999994....2334444433333 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.032
  V-ATPase_H_C  45 kkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelle.hedeevkyeALkavqkl 112
                    +L++ll+  ++   l + +    + v+ +p+ ++ + + +  + +++ll+ +e+eev+ +A+ ++ +l
    CDO70918.1 316 TSLLRLLQ--STYLPLILSAAACVRNVSIHPQNESPIIESGFLQPLINLLSfKENEEVQCHAISTLRNL 382
                   55666663..22223333344455666777777777777777777777777488**********99876 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.025
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALka 108
                   l+ Li+ll+ +++++v++ a++ + +l+   ++ k+ + k +a e i el+ +   +v+ e   +
    CDO70918.1 356 LQPLINLLSFKENEEVQCHAISTLRNLAASSEKNKQAIVKAGAVESIKELVLEVPMNVQSEMTAC 420
                   67789999777788888888899999999999999999888887777777777666666665555 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 4.7
  V-ATPase_H_C  45 kkLiklleeskdktvlavalnDigelvk 72 
                   + L ++l +s+d t +++a+  i +l++
    CDO70918.1 493 RYLYRFL-TSSDATFQHIAVWTIVQLLE 519
                   5677777.57777788888777777665 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0019       2.1      67     129 ..     100     161 ..      92     186 .. 0.86
   2 !    8.2   0.2    0.0019       2.2      66     137 ..     199     267 ..     193     281 .. 0.83
   3 !    7.4   0.9    0.0036         4       5     124 ..     308     424 ..     304     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
     DUF3361  67 adasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkad 129
                 +d+++++++ a L ++++n +++  +v+    le Li+ + s+n e+q+na+  ++ L ++ +
  CDO70918.1 100 HDTEVQRAASAALGNLAVNTENKLLIVKL-GGLEPLIRQMLSPNVEVQCNAVGCVTNLATHGK 161
                 6999*****************88888765.579*******************99988888776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
     DUF3361  66 aadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrkela 137
                 ++d +++++++  L ++ +++++  +lv+    ++ L++ L+s+++ +q ++ + l  + + a+  +rk+la
  CDO70918.1 199 SKDMRVQRNATGALLNMTHSDENRQQLVNAG-AIPVLVSLLNSPDTDVQYYCTTALSNIAVDAH--NRKKLA 267
                 57999*****************888888765.7899***************9998888888777..455544 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0036
     DUF3361   5 eFisrdGlkllvkiveegkesgeilayaLtafleLmdhgivsWdtlsdeFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLi 103
                 e ++ dGl++l++++++  +    +  a  +  ++  h   +  ++++ F++  ++ ++ + ++++++ ++++ L +++ +s+++ + + k+  +es+ 
  CDO70918.1 308 EIVKADGLTSLLRLLQST-Y-LPLILSAAACVRNVSIHPQNESPIIESGFLQPLINLLSFK-ENEEVQCHAISTLRNLAASSEKNKQAIVKAGAVESIK 403
                 556666666666666664.2.2233333345555666666666677888888888888777.7888888899999999998888888888888888877 PP

     DUF3361 104 ehLqssnqeiqtnalaLlnAL 124
                 e + +   ++q++  a +  L
  CDO70918.1 404 ELVLEVPMNVQSEMTACIAVL 424
                 777777777777766666555 PP

>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.01        12      85     150 ..     190     253 ..     182     256 .. 0.81
   2 ?    3.4   0.3     0.061        68      82     137 ..     271     326 ..     263     338 .. 0.81
   3 ?    5.6   0.4     0.012        14      81     132 ..     352     405 ..     330     427 .. 0.73
   4 ?   -3.1   0.0         6   6.8e+03       8      38 ..     497     526 ..     494     528 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.01
                    HHHHHHHHHS.S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHHHHH-SSHH..HHHHHHTTS CS
  UNC45-central  85 lesllelveskkskkvqlaalellsaAcidkkcrkaiaknyvewLeelvkssddeklvkalAavvL 150
                    l  l+ l++sk+ + +  a   ll+   +d+++ ++++   + +L +l++s d++  v+ +++ +L
     CDO70918.1 190 LVPLTRLARSKDMRVQRNATGALLNMTHSDENRQQLVNAGAIPVLVSLLNSPDTD--VQYYCTTAL 253
                    55566777774455555566789*******************************9..999999988 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.061
                    TTHHHHHHHHHHS.S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHHHHH-SS CS
  UNC45-central  82 egflesllelveskkskkvqlaalellsaAcidkkcrkaiaknyvewLeelvkssd 137
                     ++++sl++l++s + k + +aal l + A+  k   + ++  +++ L +l++s+ 
     CDO70918.1 271 PKLVSSLVQLMDSPSLKVQCQAALALRNLASDEKYQLEIVKADGLTSLLRLLQSTY 326
                    47899*******96666666889999999999999999999999999999999876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.012
                    STTHHHHHHHHHHS.S-HHHHHHHHHHH.HTT--SSSSSHHHHH.HHHHHHHHH CS
  UNC45-central  81 segflesllelveskkskkvqlaalell.saAcidkkcrkaiak.nyvewLeel 132
                    ++gfl+ l++l+++k++++vq  a+  l + A++++k  +ai k   ve ++el
     CDO70918.1 352 ESGFLQPLINLLSFKENEEVQCHAISTLrNLAASSEKNKQAIVKaGAVESIKEL 405
                    459*********999999999888888845566666666666550455555555 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 6
                    HHC-T---TTHHHHHHHHHHHHHHHHHHHHH CS
  UNC45-central   8 kfldmrqpesvrslallilsklldaakeefe 38 
                    +fl+ ++ ++ +++a+ ++++ll++ + +++
     CDO70918.1 497 RFLT-SSDATFQHIAVWTIVQLLESGGNNIR 526
                    6666.48899999999999999999888876 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.22   2.4e+02      10      64 ..      72     125 ..      68     149 .. 0.82
   2 ?    9.1   0.0    0.0017       1.9      27      88 ..     229     292 ..     206     302 .. 0.74
   3 ?   -2.2   0.0       5.7   6.4e+03      27      60 ..     354     388 ..     336     425 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.22
  Vac14_Fab1_bd  10 LaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64 
                    La++ i+ ek+++++ ++ ++p+l  +  +d++v   a+ +l n+a  +++++l 
     CDO70918.1  72 LAFAEIT-EKEVRPVGRDTLDPILFLLGSHDTEVQRAASAALGNLAVNTENKLLI 125
                    4444443.677999999*************************9999888887765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
  Vac14_Fab1_bd  27 eivkpvlkcfsDkdsrvRyyacEslyniakva..kgevlkllneifdalvklvaDsdesvksga 88 
                      ++++++ ++  d+ v yy + +l nia  a  ++++ ++  ++ + lv+l+     +v+  a
     CDO70918.1 229 GAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAhnRKKLAQTEPKLVSSLVQLMDSPSLKVQCQA 292
                    467889999*******************976511455666667788888888877777777555 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.7
  Vac14_Fab1_bd  27 eivkpvlkcfsDk.dsrvRyyacEslyniakvakg 60 
                     +++p+++ +s k +++v  +a+ +l n+a  +++
     CDO70918.1 354 GFLQPLINLLSFKeNEEVQCHAISTLRNLAASSEK 388
                    56777777766441456888888888887765543 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       3.9   4.4e+03      15      26 ..      28      39 ..      24      40 .. 0.85
   2 ?    3.2   0.0      0.17     2e+02       2      19 ..      67      84 ..      66      98 .. 0.76
   3 ?    2.7   0.1      0.24   2.7e+02       1      13 [.     104     116 ..     104     120 .. 0.92
   4 ?    0.7   0.0         1   1.2e+03       1      26 [.     204     239 ..     204     240 .. 0.78
   5 ?   -0.1   0.0       1.9   2.2e+03       1      13 [.     245     257 ..     245     268 .. 0.91
   6 ?    4.8   0.2     0.052        59       1      25 [.     288     322 ..     288     324 .. 0.73
   7 ?    1.0   0.0      0.87   9.7e+02       1      15 [.     454     468 ..     454     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.9
                GGGHHHHHHHCT CS
    HEAT_PBS 15 eeaipaLleaLq 26
                 ea++ Ll+ L+
  CDO70918.1 28 REAVADLLQYLE 39
                599*****9998 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.17
                HHHHHHHHHHCTSGGGHH CS
    HEAT_PBS  2 RraAakaLgqlgdeeaip 19
                +r+Aa a ++++ +e+ p
  CDO70918.1 67 QRSAALAFAEITEKEVRP 84
                89**********966544 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlg 13 
                 v+raA  aLg+l 
  CDO70918.1 104 VQRAASAALGNLA 116
                 89********995 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 1
                 HHHHHHHHHHHCTS..........GGGHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlgd..........eeaipaLleaLq 26 
                 v+r+A+ aL ++++            aip+L+ +L+
  CDO70918.1 204 VQRNATGALLNMTHsdenrqqlvnAGAIPVLVSLLN 239
                 789999999999888777777777778888887775 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlg 13 
                 v+++++ aL ++ 
  CDO70918.1 245 VQYYCTTALSNIA 257
                 89*******9986 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHCTS..........GGGHHHHHHHC CS
    HEAT_PBS   1 vRraAakaLgqlgd..........eeaipaLleaL 25 
                 v++ Aa aL +l +           + +  Ll++L
  CDO70918.1 288 VQCQAALALRNLASdekyqleivkADGLTSLLRLL 322
                 8999*********9766666666666666666666 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.87
                 HHHHHHHHHHHCTSG CS
    HEAT_PBS   1 vRraAakaLgqlgde 15 
                 v+ + a aLg+l ++
  CDO70918.1 454 VQGNSAAALGNLSAK 468
                 77889******9875 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.5   1.7e+03       9      37 ..     112     139 ..     105     166 .. 0.67
   2 ?    0.2   0.1       0.7   7.9e+02      11      76 ..     214     275 ..     204     296 .. 0.64
   3 ?   -2.3   0.0       4.1   4.6e+03      48      65 ..     291     308 ..     281     313 .. 0.75
   4 ?   11.1   0.2   0.00028      0.31      18      81 ..     345     407 ..     327     419 .. 0.79
   5 ?   -3.1   0.0       7.2   8.1e+03      44      62 ..     505     523 ..     501     527 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.5
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcn 37 
                      lgnl+  n+e++  +++l+gle ++ q+ 
       CDO70918.1 112 LGNLAV-NTENKLLIVKLGGLEPLIRQML 139
                      566654.5677888888888888887764 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.7
  Atx10homo_assoc  11 nlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgvv 76 
                      n+++++ e+++++++ ++++++ s  n  d +  ++ +++ a+ n+  + ++n++ +a+ e+k v 
       CDO70918.1 214 NMTHSD-ENRQQLVNAGAIPVLVSLLNSPDTD--VQYYCTTALSNIAVD-AHNRKKLAQTEPKLVS 275
                      555544.4555566677777777776665554..566777777776654.5678888888877764 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.1
  Atx10homo_assoc  48 wailairnLlegneenqe 65 
                      +a la+rnL  + +   e
       CDO70918.1 291 QAALALRNLASDEKYQLE 308
                      688999**9988766555 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00028
  Atx10homo_assoc  18 evqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgvvdeevL 81 
                      ++ + + e + l+ +++  ++ +n+  ++ +ai ++rnL  ++e+n++ + +  a +  +e vL
       CDO70918.1 345 QNESPIIESGFLQPLINLLSFKENE-EVQCHAISTLRNLAASSEKNKQAIVKAGAVESIKELVL 407
                      5666777888888888888886655.56889*****************9998877777666665 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 7.2
  Atx10homo_assoc  44 firewailairnLlegnee 62 
                       ++  a+++i +Lle+  +
       CDO70918.1 505 TFQHIAVWTIVQLLESGGN 523
                      5678899***999997555 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.8   8.9e+02       7      39 ..     131     163 ..     130     185 .. 0.71
   2 ?   -2.6   0.0       6.3     7e+03      15      44 ..     198     227 ..     192     230 .. 0.81
   3 ?    5.0   0.6     0.027        31       6      50 ..     230     284 ..     226     332 .. 0.82
   4 ?    1.2   0.1      0.44   4.9e+02       7      45 ..     356     396 ..     353     428 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.8
  RasGEF_N_2   7 iellvnqLydqsrevvaaaleiLeeacddkesl 39 
                 +e l++q+  ++ ev+  a+ ++ +  ++ ++ 
  CDO70918.1 131 LEPLIRQMLSPNVEVQCNAVGCVTNLATHGKTS 163
                 789*****************9999986665333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.3
  RasGEF_N_2  15 ydqsrevvaaaleiLeeacddkeslevlve 44 
                   +++ v++ a  +L ++++++e+ ++lv+
  CDO70918.1 198 RSKDMRVQRNATGALLNMTHSDENRQQLVN 227
                 567889999999999999999999998887 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.027
  RasGEF_N_2   6 giellvnqLydqsrevvaaaleiLeeacddkeslevlvelkpsl..........q 50 
                 +i++lv  L+ ++++v+     +L ++  d ++ ++l++++p+l           
  CDO70918.1 230 AIPVLVSLLNSPDTDVQYYCTTALSNIAVDAHNRKKLAQTEPKLvsslvqlmdsP 284
                 5899***********************9999********9998865554444332 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.44
  RasGEF_N_2   7 iellvnqL.ydqsrevvaaaleiLeeacddk.eslevlvel 45 
                 ++ l+n L  ++++ev+ +a++ L +   +  ++ +++v+ 
  CDO70918.1 356 LQPLINLLsFKENEEVQCHAISTLRNLAASSeKNKQAIVKA 396
                 577888886789999***********966664888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.55
# Mc/sec: 3512.16
//
Query:       CDO70919.1  [L=260]
Description: hypothetical protein BN946_scf184829.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-39  136.6   0.0      2e-34  119.3   0.0    2.0  2  Abhydrolase_2   Phospholipase/Carboxylesterase
    9.5e-06   26.4   0.9    1.1e-05   26.1   0.9    1.1  1  Abhydrolase_6   Alpha/beta hydrolase family
     0.0017   17.9   0.0       0.03   13.9   0.0    2.4  2  Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
     0.0074   15.8   0.0      0.015   14.8   0.0    1.4  2  Esterase_phd    Esterase PHB depolymerase
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.035   14.0   0.0    1.2  1  Abhydrolase_3   alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   5.5e-38     2e-34       2     151 ..      15     170 ..      14     179 .. 0.88
   2 !   15.6   0.0     3e-06     0.011     146     213 ..     184     255 ..     175     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 5.5e-38
                    EEEEEE--SS---EEEEEE--TT--SHHHHHHHH.TT.--TTEEEEEE---EEE-GGGTT.....-EEE-SS-B--SSTTS-B-HHHHHHHHHHHH CS
  Abhydrolase_2   2 eiaevvspkdkaqavviflHGlGdsghawaeaaktea.alpnikfifphgpelpvtlngg.....mrmpaWfdlvglspekkedeagikksaekle 91 
                    e + v+sp++ ++a+vif+HGlG  ++ w  +++ ++ +l+ ik+i p++p+ p+   +      +  p+Wfd+ +l p + +deagi+ s+ ++e
     CDO70919.1  15 ERPIVISPRETHNATVIFMHGLGQRAEYWVTILQRVVdRLQGIKWILPQAPAGPLGSSYQwrgldAGRPSWFDITELPPCNCHDEAGIASSVATIE 110
                    56789************************9998765526899*********99887665411122446**************************** PP

                    HHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS- CS
  Abhydrolase_2  92 elidaelkkgipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessat 151
                    +l+  e+  g + +rii+ GF+qGaal+l +alt+ ++lgg+ ++sg++p+++   ssa+
     CDO70919.1 111 NLLTREVRGGTEPNRIIVAGFGQGAALSLVTALTTLHELGGVASLSGWIPQPTRQVSSAI 170
                    **************************************************9998776665 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3e-06
                    TTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-....GEEEEEETT--SS--HHHHHHHHHHH CS
  Abhydrolase_2 146 lessatavtkklpilqiHgeeDpvvplalgkaakevlkkllk....kvelksyeglaHsideeemqdikefl 213
                    +e+++ ++   lp++  Hg  D  vpl+ ++    +l++ l+    +  +k+y gl+H i  +e+ d + +l
     CDO70919.1 184 TEQAMLQLEPSLPVFWAHGLADVEVPLSYAEDGTAFLRDGLNipesNIVFKTYDGLQHDINDTELDDFAAWL 255
                    455666677799***************************9999999999****************9987665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.9   3.2e-09   1.1e-05       1      96 [.      30     191 ..      30     256 .. 0.62

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.2e-09
                    EEEE--GC.....G....C..HHHH.........HHHHCCTCEEEEE--TTS..TS-GGCS--HHHC...............HHHHHHHCCTT... CS
  Abhydrolase_6   1 vlllHGagssassW....l..vapL.........aallaagvhvlapDlpGh..Grsdpppldledl...............adlaalldelaa.. 62 
                    v+++HG+g  a+ W    +  v++L         a++++ g    +++++G   G   p+++d ++l               a++++ll++++   
     CDO70919.1  30 VIFMHGLGQRAEYWvtilQrvVDRLqgikwilpqAPAGPLGS---SYQWRGLdaG--RPSWFDITELppcnchdeagiassvATIENLLTREVRgg 120
                    79************8764144555577777754444444444...9******888..667777766333333333333333366677777777788 PP

                    ..TTSEEEEEETCHHHHHHHHHHCC........................EE.EEES-................. CS
  Abhydrolase_6  63 .gggpvvlvGHSlGGalalaaapla......................lvvg.vlldp................p 96 
                      ++++++ G  +G+al+l     a                      +v++ +ll+p                 
     CDO70919.1 121 tEPNRIIVAGFGQGAALSLV---TAlttlhelggvaslsgwipqptrQVSSaILLSPgvfnssfviteqamlqL 191
                    888888*********95555...333345566777788899999998666679999933333322222222220 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.4e-06      0.03      38      62 ..      21      45 ..      10      47 .. 0.86
   2 ?    1.4   0.0     0.065   2.3e+02      40      54 ..     190     204 ..     161     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.4e-06
  Abhydro_lipase 38 ssklekkpvVlLqHGLlasSevwvl 62
                    s++++++  V+++HGL + +e wv+
      CDO70919.1 21 SPRETHNATVIFMHGLGQRAEYWVT 45
                    566778889**************98 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.065
  Abhydro_lipase  40 klekkpvVlLqHGLl 54 
                     +le++ +V+  HGL 
      CDO70919.1 190 QLEPSLPVFWAHGLA 204
                     5677889******96 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   4.9e+03      17      30 ..      28      41 ..      18      46 .. 0.60
   2 !   14.8   0.0   4.3e-06     0.015      78     198 ..     103     223 ..      90     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
  Esterase_phd 17 plvvmlhGctqsve 30
                    v+++hG  q +e
    CDO70919.1 28 ATVIFMHGLGQRAE 41
                  34666677666665 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.3e-06
  Esterase_phd  78 aavvvalvdalvdeh..rvdaarvyvaGlsaGaaladllalhypdvfaavalhsGlalGeaadvisaldvmrrGlrqapaaavdalveagaypglpa 172
                   a+ v+++ + l+ e   + ++ r+ vaG+  Gaal+ + al+    +  va  sG     + +v sa+       + +   + +a+ +    p+lp 
    CDO70919.1 103 ASSVATIENLLTREVrgGTEPNRIIVAGFGQGAALSLVTALTTLHELGGVASLSGWIPQPTRQVSSAILLSPGVFNSSFVITEQAMLQL--EPSLPV 197
                   45555555555554312689***********************************9999999999998654444444455555565555..9***** PP

  Esterase_phd 173 lvvqGdadtvvavknaeslvvalrrl 198
                   +  +G ad  v    ae+ ++ lr +
    CDO70919.1 198 FWAHGLADVEVPLSYAEDGTAFLRDG 223
                   ************99999999988865 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.7e-06     0.035      49     110 ..     102     176 ..      93     244 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.7e-06
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHT.T---............EEEEEEESE-S CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrarde.gepk............vagqvliyPvt 110
                    +  ++a ++ l++++ + g++p+ri++aG   G+ l++++al    e g+++            v+  +l++P++
     CDO70919.1 102 IASSVATIENLLTREVRGGTEPNRIIVAGFGQGAALSLVTALTTLHElGGVAslsgwipqptrqVSSAILLSPGV 176
                    6667888999999988999**********************8777761333377788888888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1807.51
//
Query:       CDO70920.1  [L=554]
Description: hypothetical protein BN946_scf184829.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-25   90.3   0.1    2.1e-25   89.6   0.1    1.4  1  PolyA_pol        Poly A polymerase head domain
    0.00038   20.1   0.3     0.0012   18.6   0.1    2.0  2  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.073   13.1   0.0    1.4  1  tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putativ


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   3.6e-29   2.1e-25       1     126 []      37     177 ..      37     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 3.6e-29
                 EEEETHHHHHHHTT---CEEEEEEC.S-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEE....EEECCEECEEEEEE---SSHHH............ CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatd.aapeelakllrkkvkeallsgeefqtiavlekkql....levatfRlekdesdarnpesekste......... 85 
                 ++++GG+VRD+llg +++D+D+a++ + ++ +a+ + +  +    ++  ++++a +e++++    le+a++ +   e d++n +se+++e         
  CDO70920.1  37 CRIAGGWVRDKLLGSQCNDIDIALEnMMGVPFAERFVDYCRS--VKNLAVKNVAKIESNPDqskhLETARTTILGIELDFVNLRSEEYAEnsriptqvt 133
                 68*********************9758889999999888777..3344555555555553334579999999999*************999******** PP

                 ..HHHHHHCTSSBGGGS-EEECTTTCEE-TTS.HHHHHHTTEE- CS
   PolyA_pol  86 ..sleeDlkrRDftiNalaynlnkgkvlDlfg.GikdLkskvir 126
                   +  +D++rRD+tiNal+yn+++ +v+D +g G++dL+++++r
  CDO70920.1 134 fgTPLQDAIRRDITINALFYNVHSREVEDHTGkGLDDLRNGIVR 177
                 ********************************9********997 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1     2e-07    0.0012       2      59 ..     205     267 ..     204     269 .. 0.78
   2 ?   -3.6   0.0       1.7     1e+04      36      56 ..     273     293 ..     273     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-07
  PolyA_pol_RNAbd   2 FtIepeTaaairklap...lLkkispeRifeEllKlLlsghpeaglelLretgLlkylf..Pe 59 
                      Ft+ pe ++a ++      l  kis eR+ eEl+K++ + +p  +++l  ++ L++ +f  Pe
       CDO70920.1 205 FTMVPELQEAAKDTTIqeaLRIKISRERVGEELDKMMGGRNPLLAMDLINNLELYRSVFfiPE 267
                      66666666666665544433348********************************88886776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
  PolyA_pol_RNAbd  36 lsghpeaglelLretgLlkyl 56 
                      ls++p+a+l  L+   +l++l
       CDO70920.1 273 LSDEPSASLSALKAAMILHVL 293
                      588999999999988888775 PP

>> tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.073      83     131 ..     456     506 ..     420     512 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
  tRNA_NucTran2_2  83 edlqaldeiyqaLpIk...skkeLaitGkdLlealgvkpGpwlgeiLkeleq 131
                         ++l++++++L+     + k++ ++G++ ++ lg +pGpw g++L+++ +
       CDO70920.1 456 AAYNKLASRIEELKLPpavDAKPI-LDGREVVKVLGASPGPWTGQVLASVIE 506
                      556677777777655455599999.**********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3958.60
//
Query:       CDO70921.1  [L=425]
Description: hypothetical protein BN946_scf184829.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-15   54.9   0.9    1.6e-14   54.1   0.9    1.4  1  HMG_box       HMG (high mobility group) box
    0.00012   22.6   0.3    0.00021   21.8   0.3    1.4  1  HMG_box_2     HMG-box domain
  ------ inclusion threshold ------
      0.095   12.6   0.1       0.14   12.1   0.1    1.2  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
       0.17   12.0   0.0        0.3   11.3   0.0    1.3  1  DUF2582       Winged helix-turn-helix domain (DUF2582)


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.9   3.6e-18   1.6e-14       1      69 []      95     164 ..      95     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.6e-18
                 --SS--HHHHHHHHHHHHHHHHSTTS-.HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelk.naeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 ++Rp++af++f++e   k k + +  +  ++is+++g+ W++l+++e+++Y++ ae++k ++ + +p+yk
  CDO70921.1  95 IPRPPNAFMIFRSELWTKEKIKSTVERdHRQISRIAGNLWNKLTDDERAPYKRLAEEAKVEHARLYPQYK 164
                 68***********9876666555544449****************************************8 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.3   4.8e-08   0.00021       6      67 ..      97     158 ..      89     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.8e-08
                 SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydr 67 
                 +++nA+++f  e + + k k       + +s+ +++ W  l ++e+ +Y++ A e k++  r
  CDO70921.1  97 RPPNAFMIFRSELWTKEKIKSTVERDHRQISRIAGNLWNKLTDDERAPYKRLAEEAKVEHAR 158
                 789***************994448899******************************99776 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.1e-05      0.14      58     115 ..     153     213 ..     110     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  5_3_exonuc_N  58 ktfRhelypeYKan...ReetpeelkeqlplikevlealgikvlevegyEADDvigtlakr 115
                   k     lyp+YK     R + p + k++ +   ++l+   ++ l ++g+E DD+   l kr
    CDO70921.1 153 KVEHARLYPQYKYSpiyRRDKPAKRKPKHEPADKILRCHTVAQLIQQGFEGDDLKKELDKR 213
                   3556789*****8555599**********************************86666555 PP

>> DUF2582  Winged helix-turn-helix domain (DUF2582)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.6e-05       0.3       3      36 ..     123     156 ..     121     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
                 HHHHHHHHHHHHHHHCCSSSEEHHHHHHHCT-SC CS
     DUF2582   3 keiiGenAGkvwhlLnengeislkelkrktglsd 36 
                 +++i  +AG++w+ L + +++ +k+l+++ + ++
  CDO70921.1 123 HRQISRIAGNLWNKLTDDERAPYKRLAEEAKVEH 156
                 5679999********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.53
# Mc/sec: 2402.24
//
Query:       CDO70922.1  [L=573]
Description: hypothetical protein BN946_scf184829.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-36  124.6   0.1    6.1e-36  123.8   0.1    1.4  1  DEAD           DEAD/DEAH box helicase
    2.1e-24   86.0   0.0    5.9e-24   84.5   0.0    1.8  1  Helicase_C     Helicase conserved C-terminal domain
    2.2e-05   24.5   0.0    3.8e-05   23.7   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.049   14.2   0.4      0.049   14.2   0.4    2.5  3  Ribosomal_60s  60s Acidic ribosomal protein
       0.11   12.7   0.1       0.33   11.2   0.1    1.7  1  AAA_22         AAA domain
       0.17   12.4   0.1       0.39   11.2   0.1    1.6  1  DUF3802        Protein of unknown function (DUF3802)
        2.9    7.2   5.7        1.3    8.3   0.0    2.7  3  CMS1           U3-containing 90S pre-ribosomal complex subuni


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.1   2.4e-39   6.1e-36       1     175 [.     145     319 ..     145     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 2.4e-39
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 t iQ+  ip++++ +d+ +  +TG+GKTl +l+pv++++          ++ +g +ali++PtreLa+q++n++ k+ +  + r++l+ + +aa+ + +
  CDO70922.1 145 TGIQSYGIPILMEHRDLAAISPTGTGKTLSYLLPVMSALG-VpaassksDTGSGVRALILAPTRELAHQIHNECLKLAQGRKWRIVLFSKATAATLKDK 242
                 569*********************************8884.25889877788899*************************99****9999999999999 PP

                 HHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ++  +vdi+++tp rl+  l+ g+l+l++vr +VlDEadr+ld +f ++++++++++       + + q  v+SATlp + ++
  CDO70922.1 243 TVGDKVDIMISTPLRLVASLQAGNLELNNVRHVVLDEADRMLDAEFLNQVQEVIAACT------HPHVQKAVFSATLPANAEQ 319
                 99899***********************************************999992......345679********88765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.3e-27   5.9e-24       4     111 .]     358     465 ..     355     465 .. 0.85

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 2.3e-27
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekk....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                  +ll++l ++  +   lifv ++ r+ + ++            +v +lh+ ++++ere++++++++ges v+++t v++rG+d+++v+ Vin+d+p++v
  CDO70922.1 358 PTLLQYL-SQPYNPPLLIFVSSQPRATSlAEE----LvingIPNVDCLHAGMTKKEREDAVSRMRRGESWVMVSTEVMARGMDFKGVREVINYDFPQSV 451
                 5666666.677778889*******99544233....23332578999**************************************************** PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 +syi+riGRtgRag
  CDO70922.1 452 QSYIHRIGRTGRAG 465
                 ************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.5e-08   3.8e-05      24     168 ..     158     312 ..     121     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.5e-08
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S..............-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.......-SEEEE CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllkkgkee.........kflflvprkslleqtleefkkflseayke...igkkvsgdkkkakekdstnkkilvt 109
                 ++ +    +TGtGKTl + + ++ +l   +  +         ++l+l+p+++l  q  +e  k+++  + +    +k +    k+  +   ++ +i+++
  CDO70922.1 158 HRDLAAISPTGTGKTLSYlLPVMSALGVPAA-SsksdtgsgvRALILAPTRELAHQIHNECLKLAQGRKWRivlFSKATAATLKD--KTVGDKVDIMIS 253
                 55666789********995566666544333.2367899**************************99876666533333333333..357899****** PP

                 EHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---.....SEEEEEESS CS
      ResIII 110 tiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfke.....avllglTAT 168
                 t  +l a++     +   l+ ++   ++ DEa r+ ++++ +++ e + +       +  ++AT
  CDO70922.1 254 TPLRLVASL-----QAGNLELNNVRHVVLDEADRMLDAEFLNQVQEVIAActhphVQKAVFSAT 312
                 *********.....677777788889999******99875555555443322233445556666 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   1.9e-05     0.049       9      81 ..       5      90 ..       3      94 .. 0.81
   2 ?   -2.3   0.1       2.8   7.2e+03      34      58 ..     291     317 ..     275     322 .. 0.56
   3 ?   -2.9   0.2       4.1   1.1e+04      49      57 ..     559     567 ..     543     571 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--S CS
  Ribosomal_60s  9 kvlkaagveveaarvkllvkalegkdieellangaakla.............aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedd 81
                   ++l+  gv+ ++++ k +v+ ++gk+ +e+ a+ +a+               a ++a+   + a ++++  + kk +  eeE+ +d
     CDO70922.1  5 HLLSRGGVKFDKKKFKNDVELFNGKKAKEFKATTSAQPIggelppelnffkyAEGGAPKRKQFATDGEPGPKGKKRKVDEEEDAED 90
                   789999*****************************9977*************7777887777777666666666655555334333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.8
                    XXXXXXXXXXXXXX..XXXXXXXXXXX CS
  Ribosomal_60s  34 dieellangaakla..aaaaaaaaaaa 58 
                    +++e++a+++   +  a+ +a+ +a a
     CDO70922.1 291 QVQEVIAACTHPHVqkAVFSATLPANA 317
                    577788777766444433334433333 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.1
                    XXXXXXXXX CS
  Ribosomal_60s  49 aaaaaaaaa 57 
                    aaa++ +a+
     CDO70922.1 559 AAASTSSAQ 567
                    333444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00013      0.33      11     112 ..     164     292 ..     157     305 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee....................erpevvfvtlpsstsskdl.lrellralglelkaerlsseellealeqalra 88 
                 + ++GtGKT+++   ++++  +++a                      ++ +    +l+++ +++ + +++   a+  ++   +++ + ++++  + + +
  CDO70922.1 164 ISPTGTGKTLSYLLPVMSALGVPAASSksdtgsgvralilaptrelaHQIHNECLKLAQGRKWRIVlFSKATAATLKDKTV-GDKVDIMISTPLRLVAS 261
                 5699**********9999999999998999999999999998884444444446666666677776444444443333333.45555555888888888 PP

      AAA_22  89 rav.......ielliiDEaqh.lrseealeeL 112
                  ++       ++ +++DEa++ l  +e l+++
  CDO70922.1 262 LQAgnlelnnVRHVVLDEADRmL-DAEFLNQV 292
                 8888888888999********77.78888876 PP

>> DUF3802  Protein of unknown function (DUF3802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.39      20      81 ..     229     297 ..     222     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
     DUF3802  20 alFekssekataeetveelveeqlaenlivvce.qnpeLs.keqRlkvvrevDaiva.....DLeevLa 81 
                  lF k+++ +  ++tv + v+ ++++ l +v + q  +L+ +++R  v+ e+D +++      ++ev+a
  CDO70922.1 229 VLFSKATAATLKDKTVGDKVDIMISTPLRLVASlQAGNLElNNVRHVVLDEADRMLDaeflnQVQEVIA 297
                 6999999999******************9998647788983468*********9875111114444444 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00052       1.3     176     210 ..     246     280 ..     230     310 .. 0.86
   2 ?   -3.8   0.0       2.5   6.4e+03     118     143 ..     361     386 ..     353     389 .. 0.74
   3 ?   -1.7   3.0      0.57   1.5e+03       8      34 ..     536     557 ..     509     573 .] 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00052
        CMS1 176 srigiavGtpgRildLleeeslsvdeLkrivlDas 210
                  ++ i + tp R++  l+ + l++++++++vlD +
  CDO70922.1 246 DKVDIMISTPLRLVASLQAGNLELNNVRHVVLDEA 280
                 58999***************************975 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
        CMS1 118 vksaksngsPelLvltlaalRaaDla 143
                  +    + +P lL+  ++  Ra+ la
  CDO70922.1 361 LQYLSQPYNPPLLIFVSSQPRATSLA 386
                 444455889999**999999999887 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.57
        CMS1   8 rkaenkekgkkkksekkRskkkerkkg 34 
                 rk++  +++k++k     +k+++rk++
  CDO70922.1 536 RKRDMIAGSKRRK-----EKEQQRKER 557
                 5666556666666.....333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 3420.42
//
Query:       CDO70923.1  [L=174]
Description: hypothetical protein BN946_scf184829.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-31  106.7   0.0    1.7e-18   66.3   0.0    2.0  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   4.5e-14     8e-10      44      96 ..      14      66 ..       2      67 .. 0.87
   2 !   66.3   0.0   9.3e-23   1.7e-18       5      92 ..      79     160 ..      76     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 4.5e-14
                SCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr 44 ksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96
                +++++l+ l +++keeG++gl+rGl+ n++r +  ++ ++++y+++k++ll++
  CDO70923.1 14 NYRNALSGLLTLMKEEGVHGLFRGLGTNMIRAVLMNGSQVGSYDMFKTVLLRN 66
                3334899999**************************************99876 PP

  == domain 2  score: 66.3 bits;  conditional E-value: 9.3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 +l + ++++lag+vat+v++P dv++ rl+++ ++++       l+vl + ++eeG r l++G++p+++r  p+++l+fv++e+lk+ 
  CDO70923.1  79 LLLHTISSVLAGTVATTVCAPADVLRSRLMSAHDKTS------PLQVLTTALREEGPRFLFKGWTPAFIRLGPNTVLMFVFFEQLKKG 160
                 566889*****************************88......699***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 1093.49
//
Query:       CDO70924.1  [L=220]
Description: hypothetical protein BN946_scf184829.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-29  102.9   0.0      2e-29  102.6   0.0    1.1  1  DEAD      DEAD/DEAH box helicase
    6.2e-07   29.6   0.0    8.7e-07   29.1   0.0    1.2  1  ResIII    Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   2.2e-33     2e-29       2     136 ..      82     218 ..      81     220 .] 0.94

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 2.2e-33
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.. RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldng.. 97 
                 ++Q+e+ip+++ g dvl++a+ G GKT++f+++ lq++ e   + +  +++++ treLa q+ n++ +f ky  ++rv  ++gg++ +++ + l+ +  
  CDO70924.1  82 EVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQL-E-PVNGEVSVIVLCHTRELAFQIKNEYARFAKYmPEVRVGTFFGGTPVTKDAEILRDKtk 178
                 69************************************.4.799999*************************566*******************74346 PP

                 .CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 .vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq 136
                  ++ivv+tpgrl  l++++ l+ s+v+ ++lDE+d++l+q
  CDO70924.1 179 cPHIVVATPGRLNALVRDKILDASKVKHFILDECDKMLEQ 218
                 8****************9********************98 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   9.7e-11   8.7e-07      27     141 ..      97     212 ..      78     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 9.7e-11
                 EEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  27 glikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke......igkkvsgdkkkakekdstnkkilvttiqsldads 118
                 +l ++  G GKT v  +++ ++l   ++e  +++l+++++l  q ++e+++f++   +        g+ v++d ++  + +++  +i+v+t  +l+a  
  CDO70924.1  97 VLCQAKSGHGKTAVFvLATLQQLEPVNGEVSVIVLCHTRELAFQIKNEYARFAKYMPEVrvgtffGGTPVTKDAEIL-RDKTKCPHIVVATPGRLNALV 194
                 5678889********899999999999999****************9999998766554744554444467776666.78888889***********99 PP

                 ........HHHTTT-SEEEEETG CS
      ResIII 119 eeeeeeseellrdrfdviiiDEa 141
                       ++ l+ ++ + +i DE+
  CDO70924.1 195 -----RDKILDASKVKHFILDEC 212
                 .....777888888889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 1411.00
//
Query:       CDO70925.1  [L=202]
Description: hypothetical protein BN946_scf184829.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-25   89.7   0.0    2.3e-25   89.1   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   1.3e-29   2.3e-25       2     111 .]      50     158 ..      49     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.3e-29
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k ++l ell  + e ++++ifv+++ r+ +  kll  + ++ ++++h+ l q+er+   ++f++ e ++L+atd+ +rGid+++vn Vin+d+p + +s
  CDO70925.1  50 KNRKLNELL-DTLEFNQVVIFVKSVARAIElDKLL-VSCNFPSIAIHSGLAQEERISRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDCPPDADS 146
                 566777787.78899***********654423555.4447*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y +r+GR+gR+g
  CDO70925.1 147 YLHRVGRAGRFG 158
                 **********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1334.58
//
Query:       CDO70926.1  [L=2325]
Description: hypothetical protein BN946_scf184829.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-28   97.1   0.1    1.7e-27   96.1   0.1    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    4.1e-19   68.8   0.0    1.1e-18   67.4   0.0    1.7  1  Response_reg  Response regulator receiver domain
    3.6e-14   52.6   0.0    1.7e-13   50.4   0.0    2.3  1  HisKA         His Kinase A (phospho-acceptor) domain
    1.3e-13   51.7   1.4    2.4e-11   44.3   0.4    3.6  3  AAA_16        AAA ATPase domain
    5.2e-12   46.2   0.0    1.4e-11   44.9   0.0    1.8  1  GAF_2         GAF domain
    5.8e-08   33.4   0.0    1.5e-07   32.1   0.0    1.8  1  GAF           GAF domain
    1.2e-07   31.3   0.0    2.2e-07   30.4   0.0    1.4  1  Pkinase_Tyr   Protein tyrosine kinase
    2.2e-07   30.5   0.0      5e-07   29.4   0.0    1.6  1  Pkinase       Protein kinase domain
    2.5e-06   27.9   0.0    1.4e-05   25.4   0.0    2.4  1  GAF_3         GAF domain
     0.0013   18.7   7.3     0.0073   16.2   7.3    2.3  1  NACHT         NACHT domain
     0.0047   16.7   0.0      0.023   14.5   0.0    2.1  2  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.078   13.2   0.0    2.5  2  DUF3369       Domain of unknown function (DUF3369)
      0.068   12.9   0.0       0.17   11.6   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
       0.13   12.6   0.6       0.88    9.9   0.2    2.8  1  TPR_12        Tetratricopeptide repeat
       0.16   11.7   0.0       0.45   10.2   0.0    1.7  1  AAA_30        AAA domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.1   1.4e-30   1.7e-27       2     111 ..    1885    2002 ..    1884    2003 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1.4e-30
                  HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE..EE......TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTT CS
   HATPase_c    2 dekrLrqiisnlvdNavkfatkageieveika..se......ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmg 89  
                  d  r+rq++ nl++Navkf t +g ++v++ +  s+      ++l++s++D+GiG++ +d+++lf +f+q d+s++r+ ggtGlGlsi+++lv+lmg
  CDO70926.1 1885 DYARIRQVLMNLIGNAVKF-TANGFVRVTCAVdtSQprtmtdVHLKFSIQDTGIGLSSSDVDQLFVPFQQaDNSSTRRFGGTGLGLSISRQLVKLMG 1980
                  6789***************.98999999999866224556669****************************************************** PP

                  TEEEEEEETTTEEEEEEEEESS CS
   HATPase_c   90 GeiwvesepgrGttftftlple 111 
                  G i v+se g G+tf+ft+p +
  CDO70926.1 1981 GVIGVQSELGAGSTFWFTIPVK 2002
                  *******************975 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   9.2e-22   1.1e-18       1     109 [.    2188    2304 ..    2188    2306 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 9.2e-22
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH...ESEEEEESSCSSSEHHHHHHHHHHCT..TT....SEEEEEESSTSHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek...vdlillDinmpgmdGlellkeireed..pe....lpviiltahseeeda 86  
                    vli++D+p++++ll ++le+ ++ +v ++++g+ea++ +++++   + + l D  mp +dG+e++k+ir  +  ++    lp+++l+a  +e+++
    CDO70926.1 2188 VLIAEDNPVAQKLLIKQLERYDI-NVVATSNGEEAIAEWERHEpgyFSVALFDHHMPICDGVEACKRIRILEgkRKvpilLPIVALSADCQESTK 2281
                    8**********************.9999*************9999999********************98886522566699************* PP

                    HHHHHCTESEEEESSG-HHHHHH CS
  Response_reg   87 vealkagaddflsKpfdpeeLlk 109 
                    + +l+ag+++f sKp+++++Ll+
    CDO70926.1 2282 QLCLSAGMNGFFSKPLRKKDLLS 2304
                    *******************9986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.4e-16   1.7e-13       2      66 ..    1774    1837 ..    1773    1838 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.4e-16
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA    2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66  
                  ++ fla+++HELrtP s+ +g +++L+ + +l+  ++e ++t++++ + l+++++ +Ld+s++ea
  CDO70926.1 1774 KSNFLASMSHELRTPFSSFYGLLDILSGT-ELNAGQREIVQTAKQSCELLLKIIDSILDYSKLEA 1837
                  789***********************664.7********************************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.099   1.2e+02       1      22 [.     388     409 ..     388     422 .. 0.87
   2 !   44.3   0.4     2e-14   2.4e-11      19     164 ..     500     668 ..     491     672 .. 0.70
   3 ?   -0.0   0.0      0.84     1e+03      54     107 ..    1365    1424 ..    1355    1453 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.099
      AAA_16   1 rlvGReeeleqLlsalervrsg 22 
                 +l+GRe+ele+++++++ ++++
  CDO70926.1 388 PLFGREKELETIRNIIRHTSTS 409
                 69**************988766 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 2e-14
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala........... 106
                  +++r+++ +++G++G GKssl+ + +  ++ + g++ ++k+ + e   p++ l+ +l  + l + +  +   ++l ++   l+++l+           
  CDO70926.1 500 HSRPRTHAAIITGPPGAGKSSLILAQQAKWRSH-GLWGQAKFSEIEP-GPFASLLACL-SHVLRQLIVFH---SDLHRFVSDLKQRLGpqlqnvpllye 592
                 45566699***************6666667766.9999999999944.4777777777.52444444444...34555555555555555568888888 PP

      AAA_16 107 ..................avpelagaea......srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                                   ++               r+  l+ + +a l++  r + l+lDdl++a +++l+ll aL+ ++++
  CDO70926.1 593 gapelktilalfnivvetPQET-----LetnelpARFQSLVESVFAVLAE-TRLFALFLDDLHDAPDSTLDLLNALVNSRTR 668
                 7777888888887666442222.....14435579999999999966665.344**********************998663 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.84
      AAA_16   54 if.lrgkcdqlesaipy......salaqalareellrqlldeaesaeleawrekleealaa 107 
                  ++  + +c  +++ ++y      +al+q+l r++ l q+++    +++ea +  ++++l++
  CDO70926.1 1365 YVyETRDCNPNHRHTRYslffhsLALIQCL-RRGDLSQEERTRYFKQVEANQSYIRKWLSP 1424
                  4445667888899999999999666*****.779999999999999999999999988883 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.2e-14   1.4e-11       7     137 ..    1593    1730 ..    1587    1731 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.2e-14
                  HHHHHHHHHHHS.S...EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B.--........-TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT-- CS
       GAF_2    7 lldlvldelvel.gaa.lgyillvdddgglrlaawgeaeeefgaaldr.pl........geglvgealrtgrpvilndleedpdkkglpaghaglrs 92  
                   l+++++  +e+ g++   ++++  ++g++++a  ++ ++  +  ++  ++        ++ ++++al t+++v+ +d++++p+  +++ ++ + rs
  CDO70926.1 1593 ALQRLTEISTEVsGSQsT-CVVIAREAGDYTVA-TSMNPPDACKVHENpMPirsiadplRRTIIQHALNTKERVYYEDIASEPRFASEA-QQSPHRS 1686
                  688888888998887743.34444456776655.4444444444444422245555555888****************99978776665.99999** PP

                  EEEEEE-T.TS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2   93 flavPlis.egrvvGvlnlyankppafdeedlelLeelaeqiaiai 137 
                   +++P++s +g+++G++ l  + ++af++  +++L++l++q++i i
  CDO70926.1 1687 VICIPIFSnRGQTFGAVYL--ASKYAFSPNVVTMLTLLCQQASIGI 1730
                  ******9989********9..69999*****************987 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.3e-10   1.5e-07       4     132 ..    1592    1729 ..    1589    1730 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.3e-10
                  HHHHHHHHHHHHHHTESEEEEEE...............EEETTEEECEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHT CS
         GAF    4 elldtvveelrellgadrvalyl...............pdydGlhydipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenm 85  
                   +l++++e   e+ g +  ++ +               pd++ +h+  p   r + ++  r+i++++l+t++ +  +d++ +prfa       +++ 
  CDO70926.1 1592 MALQRLTEISTEVSGSQSTCVVIareagdytvatsmnpPDACKVHE-NPMPIRSIADPLRRTIIQHALNTKERVYYEDIASEPRFAS-----EAQQS 1682
                  5677777778888888885555534444444444445544555555.666666677777999999**********************.....55667 PP

                  TESEEEEEEEEE.TTEEEEEEEEEESSSCSHHHHHHHHHHHHHHHHHH CS
         GAF   86 girsslvvPlvn.dgelwGllvlhnpsppftreelellqvladqvava 132 
                    rs++++P+++ +g+++G+++l ++ + f+++ + +l+ l++q+++ 
  CDO70926.1 1683 PHRSVICIPIFSnRGQTFGAVYLASKYA-FSPNVVTMLTLLCQQASIG 1729
                  777********55************999.****************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.9e-10   2.2e-07     100     250 ..     167     337 ..      47     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.9e-10
                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...........TTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSE.. CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...........nkvvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekk.. 181
                  ++l + l+fa+q  + +e ++++ l+Hr+++a    l++           n+ v +  fG+ ++   + +    v+k + k  + + apE   +++  
   CDO70926.1 167 MDLATFLEFAIQATHCLEMMHRHGLIHREVRANAFHLNHhsglvrlvhfsNRAVSLEQFGVPSEFVLQADAfeeVQKLKVKEALCYFAPEQTGSMEnl 264
                  6778899****************************99999*********9***********9998443333345888889999*******76555544 PP

                  .EEHHHHHHHHHHHHHHHHT.TSSGTTTTSHHHHHHHHHHTTEE..S-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 182 .ftsksDvWsfGvllwEift.lgespypglkneevleklkegkr..lekpekcpeelyelmkkcweedpeeRp 250
                     +++D +s G++ w ++   g +p++g   e + + ++++     e  +++p+ l+ +++k ++++p+ R 
   CDO70926.1 265 aEDHRTDLYSLGIMFWTLLVgRGTMPFEGGPLELLHAVVQKRPMpvHEVRRDVPQVLAMIIEKLLQKSPDARY 337
                  4899************986527999999987776666664443322455678899999999999999999985 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.2e-10     5e-07      95     257 ..     167     341 ..     140     348 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.2e-10
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET.TTE..........EEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHH...TTSC CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLide.kge..........lKitDFGlakelesssk......ltsfvgtseYlAPEvl...kene 173
                 ++ ++  ++a q  + le +H++g+iHr +  + + +++ +g           + +  FG+ +e+  + +      + ++     Y APE     ++  
  CDO70926.1 167 MDLATFLEFAIQATHCLEMMHRHGLIHREVRANAFHLNHhSGLvrlvhfsnraVSLEQFGVPSEFVLQADafeevqKLKVKEALCYFAPEQTgsmENLA 265
                 555566678889999***************9999988853333444444455599999999888888877999976666677789*******8534444 PP

                 BSHHHHHHHHHHHHHHHHHSS..-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 174 yskkvDvWslGvilyelltgk..ppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaee 257
                  ++ +D++slG+++++ll g+  +pf+   g  +  + + q        +      + ++++++ +  +++kll+k p  R+  + 
  CDO70926.1 266 EDHRTDLYSLGIMFWTLLVGRgtMPFE--GGPLELLHAVVQ--------KRPMPVHEVRRDVPQVLAMIIEKLLQKSPDARYQSAY 341
                 499***************976216666..444444444444........1223445678899999****************87655 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.2e-08   1.4e-05      55     129 .]    1652    1732 ..    1607    1732 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.2e-08
       GAF_3   55 alarralssgevvse......psf.aeedglpdraalavPLvagr.qviGvlalastkprafdaedlelleslArqiataier 129 
                    ++ al+++e v+       p+f  e++ +p r+++++P+ + r q++G ++las  + af++  + +l  l++q++++i++
  CDO70926.1 1652 TIIQHALNTKERVYYediasePRFaSEAQQSPHRSVICIPIFSNRgQTFGAVYLAS--KYAFSPNVVTMLTLLCQQASIGISN 1732
                  445578888887777333333333133456999***********************..569********************87 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   7.3   6.1e-06    0.0073       3     164 ..     508     717 ..     506     719 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.1e-06
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.....-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-C.................... CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga.....fklvFflslrelsrsgna.....rsladllfsqlpepaapvse.................... 71 
                  i++G++G GK+ L+     +w++  l ++a      + +F   l++ls+  +        l +++  +l+       +                    
  CDO70926.1 508 AIITGPPGAGKSSLILAQQAKWRSHGLWGQAkfseiEPGPFASLLACLSHVLRQlivfhSDLHRFVS-DLK-------Qrlgpqlqnvpllyegapelk 598
                 5899***********999999*999999987644443445555555555543333344333333332.233.......133334447999999999999 PP

                 ....CHHHHCCSCCCEE...........................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH...HC CS
       NACHT  72 ....vwavllelperlL...........................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd...le 136
                      +++++e p+ +L                           l lD+l ++++         + +lL+ l++    ++  +++tvr+++ ++   ++
  CDO70926.1 599 tilaLFNIVVETPQETLetnelparfqslvesvfavlaetrlfaLFLDDLHDAPDS--------TLDLLNALVNS--RTRLLIFATVRSDRPERlekIR 687
                 99999999999999999999999999999999999999999999999998888873........567******99..**********999887766699 PP

                 TTSSCE....EEEE--TCCHHHHHHHHCTT CS
       NACHT 137 eqleea..ivlevegfsesrrkqlvrkyfs 164
                 ++++++  +++++e++s++ + +lv ++++
  CDO70926.1 688 QTFSTKstTWIQLEPLSYPAVSTLVARTLH 717
                 999999*******************99987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   1.9e+03      49      93 ..     490     532 ..     486     539 .. 0.82
   2 !   14.5   0.0   1.9e-05     0.023       4      78 ..    1890    1970 ..    1886    2022 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
  HATPase_c_3  49 elkn.alrlatsskeakrkstslGkkGiGlklAslslgkkltvitk 93 
                   l++ al++ +s+++ ++ + ++G  G G   +sl l++++++ ++
   CDO70926.1 490 GLRRvALTPSHSRPR-THAAIITGPPGAG--KSSLILAQQAKWRSH 532
                  567778888888888.578999*******..778999999999997 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.9e-05
  HATPase_c_3    4 ekAlaelvdNsldAdaen...vkievnknrgkt.......geivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlk 78  
                   +++l+ l+ N++   a+    v+  v++ +  +        +++i+D G G+s +++++ + + +++ +  ++ +  G  G+Gl 
   CDO70926.1 1890 RQVLMNLIGNAVKFTANGfvrVTCAVDTSQ--PrtmtdvhLKFSIQDTGIGLSSSDVDQLFVPFQQADN--SSTRRFGGTGLGLS 1970
                   6799********977776644444444333..223457779******************9987777777..36778888999954 PP

>> DUF3369  Domain of unknown function (DUF3369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         9   1.1e+04      39     111 ..     650     721 ..     645     732 .. 0.71
   2 ?   13.2   0.0   6.5e-05     0.078      97     166 ..    1668    1737 ..    1572    1739 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
     DUF3369  39 efaegvltqlasllnlkkdglvcaskakaaaskelkvlaatgkfesligkpleeladeelrelleraleskks 111
                 +  ++ l  l +l+n+ +  l++a  +++ + ++l+ +  t   +s+ + +le l  +++++l+ r+l++ k 
  CDO70926.1 650 DAPDSTLDLLNALVNSRTRLLIFATVRSD-RPERLEKIRQTFSTKSTTWIQLEPLSYPAVSTLVARTLHRSKE 721
                 55567777888888886666555555544.4444888888888888888899999889999999888887665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.5e-05
     DUF3369   97 elrelleraleskkslfeddfvvlyfktkegsegvlylettrplseldrkLlevFannvavafeNvllne 166 
                  ++ ++ + a e ++s +    ++ +f+++ ++ g++yl ++ + s++  ++l +++++++++++N+ll++
  CDO70926.1 1668 DIASEPRFASEAQQSPHRSVICIPIFSNRGQTFGAVYLASKYAFSPNVVTMLTLLCQQASIGISNALLFR 1737
                  556666777788888888889999*******************************************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.17      24      43 ..     507     526 ..     497     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      AAA_29  24 atlltGpsGsGKSTllDAiq 43 
                 a ++tGp G+GKS+l+ A+q
  CDO70926.1 507 AAIITGPPGAGKSSLILAQQ 526
                 689************98876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00073      0.88       2      66 ..    1010    1069 ..    1009    1070 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00073
      TPR_12    2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66  
                  +++++ +la+++++  ++  + +ll+++l ++ ++  p+    a+ lr  +r ++++g+y +Al+
  CDO70926.1 1010 TSQLYMRLAELYTWKSEFNLSDSLLQECLMRC-ES--PEE--KARLLRLRSRNHWMRGNYSAALN 1069
                  5678999*************************.34..776..9********************85 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00038      0.45      20      46 ..     507     533 ..     500     549 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
      AAA_30  20 vavltGpAGtGKttalkalreaweaag 46 
                  a++tGp+G+GK+ ++ a ++ w+++g
  CDO70926.1 507 AAIITGPPGAGKSSLILAQQAKWRSHG 533
                 689*****************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.24u 0.29s 00:00:01.53 Elapsed: 00:00:00.48
# Mc/sec: 14664.91
//
Query:       CDO70927.1  [L=505]
Description: hypothetical protein BN946_scf184829.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-55  186.9  55.6    2.6e-43  148.3  24.6    2.2  2  MFS_1       Major Facilitator Superfamily
    3.3e-09   36.1  20.9    0.00019   20.5   0.7    3.4  3  MFS_1_like  MFS_1 like family
    6.1e-07   28.1   4.6     0.0021   16.4   0.0    2.6  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3  24.6   4.4e-47   2.6e-43       3     324 ..      47     425 ..      38     428 .. 0.84
   2 !   52.8  23.0   4.9e-18   2.9e-14       3     173 ..     318     495 ..     316     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 4.4e-47
       MFS_1   3 laaflsalarsilgpalplalaedlgispse..igllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslwlllvlrvlqGl 97 
                 +a+    l +si+ p++p +  ++lg+++ +  +g+ll +y++  +++++p+++ls+++  r+  lllg ++++ + ++l+   + +w+++++rv qG+
  CDO70927.1  47 IAITTDLLIYSIIVPIIP-FRLQSLGYDGVSglAGWLLFAYSASVVIFTPPIAFLSEKYKNRKiPLLLGQVALIGSQVMLMeA-PAFWVMALARVAQGM 143
                 566667788999******.99999999998888**************************99999************6666644.99************* PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                  a++++ +g+ali d +p++  g+ +gl+++g+slG+++gp+++g+l   +g+ra+f++  iv+++ ++ + ll+ e++ +++++++   +        
  CDO70927.1 144 SACVIWVVGLALICDTVPEKIVGKQLGLAMMGMSLGFLIGPPVAGALDKRFGFRAPFIFGIIVTVIELI-GRLLIIERKEAERWDASFSALvsrknrts 241
                 *******************************************************************88.555555555555555555555599***** PP

       MFS_1 189 ..................................................kgtgpaplvp..........awkallkdpvlwillialllfffgfsgll 227
                                                                   +        +          ++k++++++ +  +++ +l+ +++++++ 
  CDO70927.1 242 ekaygpfqanqreeipalapaadtsevnragdaetptratsctptateshE--------QepgqlsiprlLLKLVRSPRAVS-AVFLALSYGVMITSTE 331
                 **************************9998888888888877777777752........03333333577788888888664.56666666668888** PP

       MFS_1 228 tllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllal 324
                   lplylq++++++ +  +gl++ ++ + ++++++++g+++dr     +++ +l++l+ a  +++ll v s+ + ++++++l+ +   g ++p+ + +
  CDO70927.1 332 PVLPLYLQTTFDFD-VSKVGLIYIAAIVPSFVSSPVSGWYADR---GGTIVSTLVCLIGAIPFWCLLTVHSNLAYFIVMFALLNLfSTGAISPITAEF 425
                 **************.999998888888889899**********...66888888888888888888888888999999***99997777777766655 PP

  == domain 2  score: 52.8 bits;  conditional E-value: 4.9e-18
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlga 99 
                 ++a+ ++ +++ + p+lpl+l++++ +++s +gl++ +  + ++v+s++ G+ +dr G     l++l++ + + ++ll + +s   +++v+ +l  l++
  CDO70927.1 318 FLALSYGVMITSTEPVLPLYLQTTFDFDVSKVGLIYIAAIVPSFVSSPVSGWYADRGGTIVSTLVCLIGAIPF-WCLLtV-HSNLaYFIVMFALLNLFS 414
                 66777788888899******************************************88888888888888888.777734.55555*******999999 PP

       MFS_1 100 .galfpag..aaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllp 173
                  ga+ p+    a++++   +   g ++g +++++++G++lgp++gg l+++++    W a+ +++a+v++l+ ++ ++++ 
  CDO70927.1 415 tGAISPITaeFAMVTRSLEGVGYGHVYGAFNVAYGIGSALGPVIGGQLYDHVSssrgWLALCFFNAGVAALSTIVTIAWFA 495
                 677665542269**********************************99999999999***************998777774 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   2.2   3.7e-05      0.22     311     383 ..     129     200 ..      67     202 .. 0.86
   2 !   20.5   0.7   3.1e-08   0.00019      10      64 ..     321     377 ..     314     388 .. 0.82
   3 !   15.2   5.3   1.2e-06    0.0073     295     380 ..     382     469 ..     374     474 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.7e-05
  MFS_1_like 311 enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                   +w++ ++ v +g+s  ++w+++   + + +p+++ ++  gl  ++ ++lG  +G  ++G+l + ++ +  F
  CDO70927.1 129 PAFWVMALARVAQGMSACVIWVVGLALICDTVPEKIVGKQLGLA-MMGMSLGFLIGPPVAGALDKRFGFRAPF 200
                 568***************************************85.7789************998777766655 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.1e-08
  MFS_1_like  10 fffaa.lgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkr 64 
                 + +++ + s  P l +yl+   ++++s++g+i+ ++ + s++s+p+ g+ aDr g  
  CDO70927.1 321 LSYGVmITSTEPVLPLYLQtTFDFDVSKVGLIYIAAIVPSFVSSPVSGWYADRGGTI 377
                 55664267889********667*******************************8865 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.2e-06
  MFS_1_like 295 iallayilrfllyaii.enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsg...lyfglGralGsliGGllwdlksai 380
                 ++l+  i  ++l+ +  + a +++++ +L+ +s+g++  + +e++  ++++sle+ g g + g   + +g+G+alG +iGG+l+d+ s+ 
  CDO70927.1 382 VCLIGAIPFWCLLTVHsNLAYFIVMFALLNLFSTGAISPITAEFA--MVTRSLEGVGYGHVYGafnVAYGIGSALGPVIGGQLYDHVSSS 469
                 667777778999999966678999*************88888886..59********997665222469****************98875 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.3   3.6e-06     0.021     130     188 ..     129     183 ..      77     193 .. 0.75
   2 !   16.4   0.0   3.6e-07    0.0021     274     385 ..     287     408 ..     229     411 .. 0.76
   3 ?   -3.8   0.3      0.49   2.9e+03     343     380 ..     451     490 ..     444     497 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 130 klvllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllG 188
                   + ++ la + +G+ a++i+ +G++ i D v +k     lg++    ++G+ lGfl+G
  CDO70927.1 129 PAFWVMALARVAQGMSACVIWVVGLALICDTVPEKIVGKQLGLA----MMGMSLGFLIG 183
                 24569******************************888888865....66777777766 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.6e-07
                 x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
        OATP 274 e....eelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGill......gGllvkklklsa 362
                      e+ +   ++p+ l++l+++p  +  ++ + ++ ++++     lp yl+t F    s+  l+  ++++p+++   +       gG +v+ l   +
  CDO70927.1 287 AteshEQEPGQLSIPRLLLKLVRSPRAVSAVFLALSYGVMITSTEPVLPLYLQTTFDFDVSKVGLIYIAAIVPSFVSSPVSgwyadrGGTIVSTLVCLI 385
                 02223566777899***************************************************999999999886655422224489********** PP

                 xxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 363 kklaklvlvvsllsllllllllf 385
                  ++ +++l++   +l+ ++++++
  CDO70927.1 386 GAIPFWCLLTVHSNLAYFIVMFA 408
                 *********99999998888876 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.49
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
        OATP 343 gaalGillgGllvkklklsakk..laklvlvvsllsllll 380
                 g+alG ++gG l  ++  s     l+++++ v+ ls++++
  CDO70927.1 451 GSALGPVIGGQLYDHVSSSRGWlaLCFFNAGVAALSTIVT 490
                 6778888888888877765433003333333344444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3888.14
//
Query:       CDO70928.1  [L=581]
Description: hypothetical protein BN946_scf184829.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.1e-145  485.4  23.2    1.5e-68  231.7  16.5    3.6  3  Acatn        Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7  16.5   8.5e-73   1.5e-68       2     225 ..     118     317 ..     117     321 .. 0.92
   2 !   91.0   0.0   3.4e-30   6.1e-26     257     343 ..     315     401 ..     313     404 .. 0.95
   3 !  167.6   0.2   2.1e-53   3.8e-49     374     548 .]     404     579 ..     400     579 .. 0.92

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 8.5e-73
       Acatn   2 fylLvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilllvlglaiskglifeg 100
                 + lL+vLyl+qG P+GLa+g+iPf+L+    ++s++e++vfsl+ yPyslk+lWsPivDs+++  iGrr+sWiiP+qlv g ++l++++       ++ 
  CDO70928.1 118 IVLLIVLYLIQGFPLGLALGSIPFILRE---HLSYSEIAVFSLCGYPYSLKLLWSPIVDSVFFPSIGRRKSWIIPMQLVIGTIMLAMSY-------YS- 205
                 679************************9...9*****************************************************8873.......33. PP

       Acatn 101 vddafhgeasekvlkvnilsLtlvflvLvllcatqDiavDgWaltiLskkslsyastaqtvGlnlGyflsftvflslnssdfvnkylrkvpleyglvsl 199
                  ++ +      +    ++++L+  f+ Lv++ atqDiavDgWalt+Ls+++l++ast+qt+Gln+Gy++s+tvfl+lns+df++++        + +sl
  CDO70928.1 206 -EELM------SNPGKHLYTLSAAFFSLVFFSATQDIAVDGWALTLLSEENLAFASTCQTIGLNTGYLMSYTVFLALNSEDFAKRW------GIPRLSL 291
                 .2222......12234689***************************************************************9987......56789** PP

       Acatn 200 sgylklaGllyllvtlyvvfltkekp 225
                 + yl++  ++ ++vt++++f++++k 
  CDO70928.1 292 GTYLFFCAFMSFAVTVWLLFIKEDKE 317
                 *********************98875 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 3.4e-30
       Acatn 257 deeksektssiksvyrllikvlkLksvrllalihlisklafqcneaatnlkLLekGlkreDlavtvlidvPfeiifgyyvakwssdk 343
                 d+e++++  sik+vy +++++ +Lk v++l ++hlisk+++q n+a t+lk++ekGl reDla+tvlid+Pf+ii g+   kws+ +
  CDO70928.1 315 DKESTSEDISIKAVYTTMWQICRLKHVQILLFVHLISKIGWQANDAVTQLKMVEKGLGREDLAMTVLIDFPFQIIGGWLAGKWSRGD 401
                 677889999***************************************************************************976 PP

  == domain 3  score: 167.6 bits;  conditional E-value: 2.1e-53
       Acatn 374 ltPWlygflgrllaailgsyvvksfPkdgeitksyfllviiqhllgsflstvqfvgisafhtriaDpvlgGtymtllntlsnlGgtWprllvlslidyf 472
                 l+PW+y+f  rl  ++l +++v+ fPk   i++++f+l+++  +  sf  t+qf gisafhtri+Dpv+gGtymtllnt++nlGgtWpr +vl  +d+f
  CDO70928.1 404 LRPWIYAFWPRLGLTLLFTLMVYYFPK-PPISTGFFVLLVTATIAQSFAGTIQFGGISAFHTRISDPVVGGTYMTLLNTFTNLGGTWPRYFVLKGVDFF 501
                 89************************6.89********************************************************************* PP

       Acatn 473 tiyecvledksketvllkna....skelctkslggkvsivrDgyyvtnllCivlGillyftylkkkaqkLqklpisaWrv 548
                 ++++c+++d + +  + ++     +k +c + lgg++ + rDgyy+ +++Ci++G+l ++ +l  +a+kLq++p+ +Wr+
  CDO70928.1 502 SVATCHIKDADVALKA-QECvsehGKAACAD-LGGDCVTERDGYYIVSAICIIFGVLSVLFFLIPTARKLQAVPVGKWRI 579
                 ******9998654432.22223337788887.**********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.35s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3521.28
//
Query:       CDO70929.1  [L=1144]
Description: hypothetical protein BN946_scf184829.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-16   57.4   0.6    2.1e-15   56.1   0.6    1.7  1  GYF       GYF domain
      0.004   16.9   0.1      0.013   15.3   0.1    2.0  1  GYF_2     GYF domain 2


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.6   2.3e-19   2.1e-15       1      44 [.     333     377 ..     333     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.3e-19
         GYF   1 WeYkdpqgevqGPFsseeMqkWykagYFkdgllvrrv.edsefys 44 
                 W Y+dpqg+vqGPF +  Mq W+++gYF+++ll++r+  d+++++
  CDO70929.1 333 WSYLDPQGNVQGPFRADVMQRWFNEGYFTPDLLMKRThIDTDWTP 377
                 ************************************978899987 PP

>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.5e-06     0.013       1      46 [.     333     380 ..     333     382 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
       GYF_2   1 Wyyad.ngqqqGPfsleeLkelaasgeitpdtlVWreGmd.dWkpase 46 
                 W y d +g+ qGPf  + +++++++g+ tpd l  r   d dW+p++e
  CDO70929.1 333 WSYLDpQGNVQGPFRADVMQRWFNEGYFTPDLLMKRTHIDtDWTPVAE 380
                 667775789*************************98886549999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.50
# Mc/sec: 6884.05
//
Query:       CDO70930.1  [L=465]
Description: hypothetical protein BN946_scf184829.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.17   12.0   0.0    1.2  1  Mod_r     Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.5e-06      0.17      52     119 ..      48     115 ..      47     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-06
       Mod_r  52 lepeleelrselqekleelkelekefeekeqeldellqkfspdallarLqtavaeaeeeSealaeefl 119
                 le+e++ l+s lq++  ++ +++  + + ++   +++ +  p +l a L  +v++ +++++a+++ +l
  CDO70930.1  48 LEEEITALSSCLQNAVVKTGQIYGFYTDVKRLGIQKYAPHPPRSLTASLGREVEKYDQLCDAMESHLL 115
                 589999999********************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3321.19
//
Query:       CDO70931.1  [L=698]
Description: hypothetical protein BN946_scf184829.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-13   47.9   0.2    2.8e-12   46.4   0.2    1.9  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1
  ------ inclusion threshold ------
       0.94    9.3   7.7        3.7    7.4   0.6    2.3  2  SPX       SPX domain


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.2   3.2e-16   2.8e-12      62     311 ..     223     465 ..     189     485 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 3.2e-16
       Atg14  62 iknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslssktlesrss 160
                 +  +   ++e  +++++l+++  +++++ s l+++ie++++ l++++++l+        +  + + +  +   ++ ++i + +  lssl+  +  +rs 
  CDO70931.1 223 VGVLLREISEREAWVSELQDERIKVEQDSSDLRRRIEARREDLRQRRETLA--------IARQAHDEDLAAQLQVEETIAEERIRLSSLREIIPIMRSN 313
                 555666677777777777777777777777777777777777777777774........44555555555556788999999999************** PP

       Atg14 161 lcselaklyglrrtsyergkwvfskngeseesytIggiplpdlrdlna............fpaeeIsasLsyiaqLlaLvshyLsirLPaeltlphscq 247
                 l+s ++ +y++              ++  +  +tI ++plp++   +             ++ ++++++L+y+aq ++L++ y + rL +++t  +s++
  CDO70931.1 314 LISIVSFIYPIEL------------VSPPDLLFTILDVPLPIPVGATDpapplslpahkeVTEDSVATALGYAAQVVQLLAAYMGHRLVYPVTCVGSRS 400
                 *************............789***************999999************************************************** PP

       Atg14 248 pirplfiekslpkls..........peteseflegvalLayniawLcrtqgvnsleleptqldtlenlcdllkl 311
                      +i++ +++++             +  f  gv lL+++i +L++  +++ l  ++   +tl nl +ll +
  CDO70931.1 401 -----MIKDGISAMVgprnfplfskGVDTYRFEYGVFLLNKDIEMLMTERNLRAL--DMR--HTLPNLKNLLLT 465
                 .....55555555555333344336455666888999************999985..445..667777555554 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.4    0.0015        13      92     234 ..      61     284 ..      14     313 .. 0.58
   2 ?    7.4   0.6   0.00041       3.7      93     182 ..     469     567 ..     360     668 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0015
         SPX  92 e...............................slprrsplsrssrssssygglvssppsansssssddssesnpa........dssssssssesessss 151
                 +                               s+++ ++l + +  ++  ++l s +ps+ +s +++ ss+++ +        d               
  CDO70931.1  61 RpgwklleswevdlnrlpplpedlaahpnhlpSNTLLITLTNGETLYLPPSSLRSASPSRPPSPNTGYSSDPEAEvhrarengD--------------- 144
                 145555555556666666666666555555554444444455555555555555555555555555555555533333233331............... PP

         SPX 152 sspsllrrlfs..............esesreeksersyetrplr...................................................aeke 185
                 ++ sll    s              e+   e++ +        r                                                   + ++
  CDO70931.1 145 TAASLLDTKPSdaglermpisptmsEIDGGESRRK--------RavksaslqdilklinlqacildteqslgeivrevdkmvvhnevgvllreisEREA 235
                 22222222222222222222222222222222222........12223333366667788888888888888888888899999999999999999999 PP

         SPX 186 FferLdseLnkvetFykakeeefterlesLrkqleal.rprrikeaeerk 234
                  ++ L++e  kve+  +  ++   +r e+Lr+  e+l ++ r+++ e+  
  CDO70931.1 236 WVSELQDERIKVEQDSSDLRRRIEARREDLRQRRETLaIA-RQAHDEDLA 284
                 ********************************99999555.444333333 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00041
         SPX  93 slprrsplsrssrssssygglvssppsansssssddssesnpa....dssssssssesesssssspsllrrlfsesesreeksersyetrplr.....a 182
                 +++r++p++r  +ss s ++l+s++p + ++s  +++++s  +    d++s+ +sse+ +s+  ++ l+   +s+s s  +++ +s +t+p+r     +
  CDO70931.1 469 NEQRSIPGHRVASSSVSISSLQSQSPVPTKPSLPASQPTSGTDgiaaDNDSTAPSSEPPPSELGADVLVGVSASASASAGNTPPTSGSTTPTRgsqqrK 567
                 445555555555555555555555555555555555555553333332222222222222222222222222223333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4671.16
//
Query:       CDO70932.1  [L=981]
Description: hypothetical protein BN946_scf184829.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-54  176.7   9.9    1.1e-07   31.1   0.0    7.5  7  PUF       Pumilio-family RNA binding repeat


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.8e-10     5e-06       4      35 .]     565     596 ..     562     596 .. 0.90
   2 !   31.1   0.0   6.4e-12   1.1e-07       4      34 ..     601     631 ..     598     632 .. 0.90
   3 !   30.8   0.1   7.9e-12   1.4e-07       3      34 ..     648     679 ..     646     680 .. 0.92
   4 !   29.3   0.1   2.4e-11   4.3e-07       5      34 ..     686     715 ..     683     716 .. 0.89
   5 !   23.0   0.0   2.4e-09   4.2e-05       5      25 ..     722     742 ..     718     752 .. 0.84
   6 !   18.5   0.1   6.3e-08    0.0011       2      34 ..     755     787 ..     754     788 .. 0.89
   7 !   17.8   0.0   1.1e-07    0.0019       4      31 ..     795     822 ..     793     826 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.8e-10
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 g++ qL++dq+G++ +Qk le   +e ++ i+
  CDO70932.1 565 GEIPQLCKDQHGCRYLQKKLEEGNPEHRDMIF 596
                 799******************99998888776 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 6.4e-12
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqkkli 34 
                  ++ +L+td++Gny++Qklle++t eq+ li
  CDO70932.1 601 SHFADLMTDPFGNYLCQKLLEYSTDEQRNLI 631
                 57789***********************998 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 7.9e-12
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 + ++v+L++d +Gn+v+Qk+l ++ +e+ ++i
  CDO70932.1 648 SLHVVVLIKDLNGNHVIQKCLNKLAPEDNQFI 679
                 669********************999999998 PP

  == domain 4  score: 29.3 bits;  conditional E-value: 2.4e-11
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkli 34 
                 n+v+ +t+++G++v+Q++++ha+e q+ ++
  CDO70932.1 686 NCVEVATHRHGCCVLQRCIDHASEHQRIQL 715
                 89*******************999887665 PP

  == domain 5  score: 23.0 bits;  conditional E-value: 2.4e-09
                 GHHHHHTSTTHHHHHHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQklleh 25 
                 n ++L++d+yGnyvvQ++l+ 
  CDO70932.1 722 NALTLVQDPYGNYVVQYILDL 742
                 6789***************95 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 6.3e-08
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 + gn++ Ls+ ++ ++v++k++ +a+ + +k +
  CDO70932.1 755 FTGNVCALSVQKFSSNVIEKCIRVAEHNTRKML 787
                 6799********************998887766 PP

  == domain 7  score: 17.8 bits;  conditional E-value: 1.1e-07
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqk 31 
                 ++l++L  d yGny vQ+ l++a++ q+
  CDO70932.1 795 TRLEKLLRDSYGNYCVQTALDYAEPAQR 822
                 6799*******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6618.52
//
Query:       CDO70933.1  [L=486]
Description: hypothetical protein BN946_scf184829.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-18   66.7   0.0    2.4e-17   63.8   0.0    2.2  2  SET       SET domain
  ------ inclusion threshold ------
      0.011   16.4   3.5       0.32   11.7   1.1    2.6  2  Pre-SET   Pre-SET motif


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.12     1e+03      39      94 ..      59     110 ..      21     195 .. 0.67
   2 !   63.8   0.0   2.7e-21   2.4e-17       1     168 [.     300     445 ..     300     446 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
                 EEEEEXGGXXGGSX.....HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  39 lfslpeapknlaft.....kelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 ++ +         +     k+laka+ s ++    +d++ +++++t  +l++ +k+ s l 
  CDO70933.1  59 IRRW---------DrrqrqKRLAKAERSAEIAVQVEDHQMLHEDKTFYELARGCKELSQLY 110
                 3444.........234466777777777777777788888888888777777777777664 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 2.7e-21
                 SCEEEESSXBXTTXEEEEEE.........ECCEECHHHHHHHHHH..........................HTEEEEEXGGXXGGSXHHHHHHHTTSSH CS
                 xxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.........eeiiltkdeadksele..........................aylfslpeapknlaftkelakasastll 64 
                 G+G +At ++ +g ++++y          e   l ++                                   ylf+l+                     
  CDO70933.1 300 GWGARATVPLVRGKVVGIYTgslvsiirtEIVALADT-------PavtqaahlsgphsrradadrrvddrgSYLFDLD--------------------- 370
                 9***************988875443333332233333.......2455555688888888888888888888888888..................... PP

                 HHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXHCCCCC...HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEE.......TTSSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxx RF
         SET  65 qklakdqkqaekedtdaalkasskaesdlnaskpeagaf...saiagysidaralksgngagplarflNHsCdpNcnltvqnv.......lrgprvavf 153
                                                +++ +      +a+ +ys+d+   ++gn++    rf+NHsC+pN+  +v +v       l+ p++a++
  CDO70933.1 371 -----------------V-------------HEGSDD-DeddNATDKYSVDG--YAYGNWT----RFVNHSCEPNM--RVMPVvwdtipeLNQPYLAFV 430
                 .................1.............111112.124589999****5..5******....***********..6666666************** PP

                 ESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxx RF
         SET 154 AtrdIkkGeEltidY 168
                 At+dI++ +EltidY
  CDO70933.1 431 ATQDIPARTELTIDY 445
                 *************** PP

>> Pre-SET  Pre-SET motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   3.6e-05      0.32       7      58 ..     214     279 ..     208     289 .. 0.71
   2 ?    3.9   0.0    0.0093        83      85     107 ..     459     481 ..     423     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
                 SS-EEEE-SSSS--C...GCCSEE-SS-EE-.TTS--CCC--...............----TTCC- CS
     Pre-SET   7 kvpipvvnevdselp...pakfeYikknils.egvedkeslars..........eesgCeCkgdCl 58 
                 ++p+++vn+++ e++    + feYi++++++ ++v++++ +a             ++ C+C+++C 
  CDO70933.1 214 AAPVTIVNTLNAEEVpplVDGFEYIERHYVRaPNVPSNKEYADClrlftfslppGMESCTCSERCP 279
                 679******999955466789***988877414555444444314577888988788999998894 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0093
                 .HCH-SEEE---TTSSS.-TT-T CS
     Pre-SET  85 keeekkpiyECnekCkCssksCk 107
                 ke+ ++++ E  ++C C ++sC+
  CDO70933.1 459 KEKGREAVPEGARRCMCGTASCR 481
                 347889999*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3291.46
//
Query:       CDO70934.1  [L=498]
Description: hypothetical protein BN946_scf184829.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-13   48.9   0.6      1e-12   48.3   0.6    1.3  1  HMG_box    HMG (high mobility group) box
     0.0002   21.9   0.1    0.00037   21.0   0.1    1.4  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.6   1.1e-16     1e-12       2      69 .]     114     181 ..     113     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.1e-16
                 -SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 +Rp +af++f++e    +k+   e   + isk+lg+ W++l +e+K  Y++ a +ek  ++ ++p+y+
  CDO70934.1 114 PRPRNAFMIFRSEYCTDVKESQVEHDHRMISKILGQVWRSLAQEKKDYYKQLAVEEKRIHRIKHPNYR 181
                 8******************************************************************6 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   4.1e-08   0.00037       6      63 ..     115     171 ..     110     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.1e-08
                 SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHH CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkk 63 
                 ++rnA+++f  e    +k++ +     + +sk +++ W++l +e K  Y++ A e k 
  CDO70934.1 115 RPRNAFMIFRSEYCTDVKES-QVEHDHRMISKILGQVWRSLAQEKKDYYKQLAVEEKR 171
                 689*****************.669999**************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3422.21
//
Query:       CDO70935.1  [L=301]
Description: hypothetical protein BN946_scf184829.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.0   0.0       0.78    8.9   0.0    2.0  2  DHO_dh    Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00013       2.4       4     116 ..      53     176 ..      50     191 .. 0.72
   2 !    8.9   0.0   4.3e-05      0.78     128     177 ..     227     280 ..     202     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00013
                 EEETTEEESSSEEE-TTSST.TSSSHHHHHCTT.SSEEEEEEE-SS-..B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC.... CS
      DHO_dh   4 tkvlglkfknpiglAaGfdk.egeeilkllklg.fgaieigsvtpkp..qeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeek...k 95 
                 +k+  l+ + p+++A+     + e++ +l++    ga+ + ++t ++      ++ r+ rl    s++Ns+G   + l+++l+ +   +     +   +
  CDO70935.1  53 VKIHTLHIEPPVVNASCAWAsDYEQLRELYDSPhTGAVVTRTATFNGfsEDYSNTARIHRLRDTVSSVNSYGYSPHPLSSYLDWVYTLLTTPCLDgslP 151
                 7888899999999999875515667778888889**********986224455789******************9999999998877776654445665 PP

                 CEEEEEEE-TTS....S.HHHHHHH CS
      DHO_dh  96 elginlskakkt....enavddyve 116
                 + ++++s++ +t     ++vdd   
  CDO70935.1 152 TKPVIMSITASTptvlAQMVDDIQT 176
                 5566666666663333445555444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 4.3e-05
                 EEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH....SSEEEEEE-SSSSHHH CS
      DHO_dh 128 lelNvSsPntpglrdlqekeelkaillkvvkevs....kvpvlvKlaPdltdee 177
                 +elN S+Pn++  +   + ++l   ll+v++ ++    +  +  Kl+P l  + 
  CDO70935.1 227 IELNTSCPNIKDSPPPSYTFALLLPLLDVLSSAFyndpSLTIGLKLPPYLYTTR 280
                 89***************************9999888888889999999776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1966.21
//
Query:       CDO70936.1  [L=240]
Description: hypothetical protein BN946_scf184829.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-44  149.0   0.0    8.8e-44  148.8   0.0    1.1  1  TRAPP     Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.0   4.9e-48   8.8e-44       1     145 [.      72     227 ..      72     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 4.9e-48
       TRAPP   1 fafllgelvsylqrdskdveevekrLekmGyrvGlrllelllarerp......retdilevlkfickdlWkllfgkqidnlktn..hrgeyvltdnefp 91 
                 fafl++e+v+y+q++++ ++++e+rL+++GyrvG+r+lell  r+++      ret++l +l  i++++W++++gk++d ++++  + +ey+++dn++p
  CDO70936.1  72 FAFLFSEIVQYTQKRVNGINDLERRLNTLGYRVGTRVLELLAWRNESaakapkRETRFLPALMSIHTHVWRAVYGKPADAIEKSveNADEYMIIDNDPP 170
                 89*************************************99999665577777*******************************888888********* PP

       TRAPP  92 ltrfvelpke...lsylaflcGiirGaLenlgfpakVtahelpsdelrgrttfeikv 145
                 +tr +++p++   ls+++f++Gi++++L++lgfpa+Vtah+ p+d++++rtt++ik+
  CDO70936.1 171 ITRNISVPRDmssLSCSSFTAGIVEAVLDGLGFPARVTAHNTPTDQYPNRTTILIKL 227
                 **********87667****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1819.67
//
Query:       CDO70937.1  [L=556]
Description: hypothetical protein BN946_scf184829.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3975.01
//
Query:       CDO70938.1  [L=204]
Description: hypothetical protein BN946_scf184829.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-17   60.9   0.1    1.3e-16   60.4   0.1    1.2  1  BCNT            Bucentaur or craniofacial development
  ------ inclusion threshold ------
       0.59   10.8   5.0       0.85   10.3   5.0    1.3  1  NAM-associated  No apical meristem-associated C-terminal doma


Domain annotation for each model (and alignments):
>> BCNT  Bucentaur or craniofacial development
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   1.5e-20   1.3e-16      12      68 ..     134     193 ..     123     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.5e-20
        BCNT  12 takkkKlstleKSklDWeaykdkeg....ikeeLeahnkgkegYlerqdFLqRvddrkeek 68 
                 ++  kKl+tl+ S +DW+a+++ e     +k+eLea+++g+ gYle+ +FLqRv++rk+e 
  CDO70938.1 134 KEPVKKLTTLDMSAMDWRAHVEGEAaasgVKDELEANRRGG-GYLEKVEFLQRVEARKQEV 193
                 345689***************986545559**********5.****************986 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.0   9.4e-05      0.85      27     113 ..      68     198 ..      51     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
  NAM-associated  27 kkrkpkssassspatsssestdeedssesssesseesaadsestsssrlkRPiGkkkaK.................................... 85 
                      k + ++ +s +p+t + +s++++++s++++++++ s+  ++s+ + ++kRP  +k  K                                    
      CDO70938.1  68 DKPSSSPAPSIQPPTPQGPSATPAAPSSPPNAAASSSSTAAPSPFKPPPKRPGPRKPKKtlapiqkkepvkklttldmsamdwrahvegeaaasg 162
                     345666666667777777777777666666667777777888888889***********777777777776666666666666666666555555 PP

  NAM-associated  86 .....ekrke...askdeealeklasaqkkiakksk 113
                          e++++     ++ e l+ ++++++++ +++k
      CDO70938.1 163 vkdelEANRRgggYLEKVEFLQRVEARKQEVLDATK 198
                     554443333255544455666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1414.62
//
Query:       CDO70939.1  [L=305]
Description: hypothetical protein BN946_scf184829.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-05   21.2   0.0    0.00011   21.0   0.0    1.1  1  Cullin    Cullin family


Domain annotation for each model (and alignments):
>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.1e-09   0.00011       1     103 [.      15     152 ..      15     200 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 6.1e-09
      Cullin   1 Wekleeaiqeil........kknvsklsfe.elYravynlvlsk...........................ekkqgekLydklkelieehlkellkell 63 
                 W  l++a+++i+        k  + + s++  + +avyn+ +++                            k  g++Ly++l ++  +  +e+l    
  CDO70939.1  15 WGYLHPALDHIVraptnnpaKAPAIDVSYHiGVHTAVYNYFTAQsdppggpphpaglsafpatfaaiqndkGKASGADLYEQLDRYYADVAREILLG-- 111
                 7778888888885444332222334444544788999999999899999999999999999999999877755678888888888888888888775.. PP

      Cullin  64 keesdeelLkalkkeWedhktsmkmirdifmyldrvyvk.k 103
                 + ++d++l+ +l  ++++++ +++ ++++++yl+r+yvk  
  CDO70939.1 112 APADDSTLVHYLVPCFNRYSAGAQSVSRLLNYLNRHYVKrA 152
                 5777777999***************************8741 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2022.80
//
Query:       CDO70940.1  [L=116]
Description: hypothetical protein BN946_scf184829.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-07   29.5   0.2    7.2e-07   29.2   0.2    1.2  1  Med9         RNA polymerase II transcription mediator complex
  ------ inclusion threshold ------
      0.072   13.3   0.4       0.61   10.3   0.0    2.2  2  dbPDZ_assoc  Unstructured region between two PDZ domains on D
       0.29   11.7   3.6        5.8    7.5   0.5    2.2  2  YtxH         YtxH-like protein


Domain annotation for each model (and alignments):
>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.2   1.2e-10   7.2e-07      18      80 .]      28      90 ..       7      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-10
        Med9 18 nlsskdletktgelrhkLkkarelirelpgidrsveeqeaeieeleeqlakKrelLkkyknrv 80
                 +  + l  +t + ++  k+a e+  +lpg + sveeq++ i+ le+  ++Kr+ L+++ +rv
  CDO70940.1 28 PQAKQALVRSTKDFKDSVKEAHEYATTLPGGELSVEEQDDVIDMLEKLKERKRRQLADFAERV 90
                5778889999*************************************************9986 PP

>> dbPDZ_assoc  Unstructured region between two PDZ domains on Dlg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0001      0.61      43      61 ..      17      35 ..      12      56 .. 0.78
   2 ?    0.9   0.1     0.089   5.3e+02      18      54 ..      98     115 ..      86     116 .] 0.44

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0001
  dbPDZ_assoc 43 tlseqDeGtmtPpskqttP 61
                  l+ qD G+ tP++kq+  
   CDO70940.1 17 ELATQDQGPFTPQAKQALV 35
                 5889***********9854 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.089
  dbPDZ_assoc  18 lesvsnqstpqgsGattPdnhsiidtlseqDeGtmtP 54 
                                      +s  d  +e D  + tP
   CDO70940.1  98 A-------------------NSQADVKMEVDSNASTP 115
                  2...................33333333333333333 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0054        32      48      66 ..      30      48 ..      11      55 .. 0.63
   2 ?    7.5   0.5   0.00098       5.8      38      67 ..      65      94 ..      59     114 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0054
        YtxH 48 akekakekaedlkekvkek 66
                ak+  +++++d+k++vke 
  CDO70940.1 30 AKQALVRSTKDFKDSVKEA 48
                4444455666666666653 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00098
        YtxH 38 kekakelleeakekakekaedlkekvkeka 67
                ++++ ++le++ke+ +++ +d++e v++ +
  CDO70940.1 65 QDDVIDMLEKLKERKRRQLADFAERVDSIS 94
                566667777777777666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 780.80
//
Query:       CDO70941.1  [L=186]
Description: hypothetical protein BN946_scf184829.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.013   14.2   7.4      0.013   14.1   7.4    1.0  1  Herpes_TAF50  Herpesvirus transcription activation factor (tr


Domain annotation for each model (and alignments):
>> Herpes_TAF50  Herpesvirus transcription activation factor (transactivator)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   7.4   7.5e-07     0.013     276     401 ..      54     180 ..      21     186 .] 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.5e-07
  Herpes_TAF50 276 gtaistssPargqt.aayfvaensddvvslfPsdanlvivaqsfqvtevvsllqsatspsstpaPstavraavvql.epevplkAtakqkaqqrpeg 370
                   g + ++  P  gq+ +ayfv  +  +v+s+  +  ++v   ++  ++   s++ s+ s s  paP  a+ aa v + ++  p+ A+a  ++     +
    CDO70941.1  54 GNCGEAAWPTIGQSdGAYFVHLSLPNVTSVANCYLEMVDDFGDKMASPTFSFGASTNSDSADPAPAAAAAAAAVATaSESSPVGAAAGTETAPASAA 150
                   45888999999998689**********************999999999******************9988777666156677888777776655555 PP

  Herpes_TAF50 371 sg..eekptflpqvggkddaqGlsvsdstsfat 401
                    +  +  ++ +p + ++ da+G  +++++ ++ 
    CDO70941.1 151 AEtsPAATKDGPSAASR-DARG--TRRQSQYQS 180
                   54113455667888888.8889..455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1251.31
//
Query:       CDO70942.1  [L=489]
Description: hypothetical protein BN946_scf184829.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.27   11.8   0.7       0.45   11.1   0.7    1.3  1  CbiG_C    Cobalamin synthesis G C-terminus


Domain annotation for each model (and alignments):
>> CbiG_C  Cobalamin synthesis G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   2.5e-05      0.45      33      93 ..     366     426 ..     350     451 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.5e-05
                 GEEEEEESSCCSHHHHHHHHHHHCTSTEEEE-HHHHHCHHCSCT-CHHHCCCSSS-HHHHH CS
      CbiG_C  33 avaalatidlKadepgllelaeklglplktfsaeeLaavevpnpsefvkkevGvpsVaEaa 93 
                 + ++ +t+++     ++ e++++++  ++t+s++  aa++  nps +v+ +++++s a   
  CDO70942.1 366 SADSTSTVTASPTASAVYEAVQDWESAFQTISEASAAAADSENPSHRVALKLDTHSLAAST 426
                 556678888889999*************************99**************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3214.17
//
Query:       CDO70943.1  [L=195]
Description: hypothetical protein BN946_scf184829.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1498.27
//
Query:       CDO70944.1  [L=808]
Description: hypothetical protein BN946_scf184829.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-30  105.8   2.7    1.7e-30  105.1   2.7    1.3  1  PSP1      PSP1 C-terminal conserved region


Domain annotation for each model (and alignments):
>> PSP1  PSP1 C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   2.7   9.3e-35   1.7e-30       1      84 [.     715     798 ..     715     800 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 9.3e-35
        PSP1   1 kqvlrlatpedvstnlenkqdeekalhiaqeklkelnlnmklldaefqfdrkkltfyYvaeervDFreLvkeLfkfyktRIwLc 84 
                 k ++ +a+++d + + ++ qde+kal+++++k+++ +l+m+++dae+q+dr+kltfy++ae+r+DFreLv+eLf+ yktRIw+ 
  CDO70944.1 715 KMIYGKAQHRDTQSLAAKAQDEAKALELCRNKVRQKKLPMEVIDAEYQWDRRKLTFYFIAEKRIDFRELVRELFRLYKTRIWMA 798
                 568899*****************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5442.70
//
Query:       CDO70945.1  [L=949]
Description: hypothetical protein BN946_scf184829.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-48  165.4   0.0    1.5e-47  162.7   0.0    2.1  2  Rgp1        Rgp1
    0.00087   19.8   0.0        2.6    8.5   0.0    3.3  3  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
  ------ inclusion threshold ------
        0.1   12.7   0.0        2.8    8.0   0.0    2.5  3  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Rgp1  Rgp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.86   5.1e+03       2      15 ..     314     327 ..     314     330 .. 0.88
   2 !  162.7   0.0   2.6e-51   1.5e-47      88     402 ..     460     789 ..     436     790 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.86
        Rgp1   2 LlmgYvQisGsftl 15 
                 +l +Y+Q+ Gs+t+
  CDO70945.1 314 ILYAYAQLLGSLTI 327
                 6889*******997 PP

  == domain 2  score: 162.7 bits;  conditional E-value: 2.6e-51
        Rgp1  88 siPllstpqslLfvdLtLaPGEsksFefsfkLPkdLpPsyrgkaikisYsLviGtqrpggak.......qqvksvevPirvlpsvnssgeqlghdLmsp 179
                  +P+l +++s+L+vdL+L PGEs+++++s  LP +LpP++rg+a+k+sY++++G+ r g+a+        ++++++vPirv+++v+     +     sp
  CDO70945.1 460 PLPTLEVQPSMLAVDLSLGPGESRTYTYSLVLPDNLPPTFRGRALKFSYQFILGVCRAGSATspgagpsSSSRVMKVPIRVYNNVSGMLAFPKTCTTSP 558
                 68*******************************************************6555555555677888**************999999999999 PP

        Rgp1 180 yillrdea.rvkevk........................srkkssssskekkkskskkkseksesskedFlkyveelleneseskdieellspqlevqf 253
                 +    d+a rv  v                         ++   +++ + ++ ++  +   k   s ed+++y ++ll++  + k  +  +  +l v+ 
  CDO70945.1 559 P----DRAlRVP-VGksprpydmlwpvtsqtapappgkvTEGPAEQTRRGSPLRTPRPGLPK-PASYEDLQDYARNLLASFPDPK--ATGVRIKLPVEA 649
                 9....5551454.444889****************998644444444444444555555554.4899************997776..445555555544 PP

        Rgp1 254 eeeedseeneesrrksvvskesssvkeaidllilrsqlasnlqksyeIarngkrvAvltLskpaYrlgetitlvidfsdae.klkvyavtatLesfEki 351
                  ++++s e + ++ +   ++++  +++a++ l++++ +a     sy+++++g +vAvlt+ k+aYrlgeti +v++ ++   + +v +++a Le +E +
  CDO70945.1 650 IRSSHSAELD-RQLEDDLDSPTG-CRQAVEVLTRNPRKA-----SYDVTKDGVKVAVLTFPKSAYRLGETILGVVETNERAsRARVLKLSAMLEAHESL 741
                 4333333333.233344555655.*******99999996.....9********************************9977999*************** PP

        Rgp1 352 dpslalrseasikrvtrkvvaesseitlfarervsfkltipksatpqFkTs 402
                  +++a       +r  r+v+ae++++ + ++ r  f+l ip  a+p F+ s
  CDO70945.1 742 PSNIASL---ASSRQLRRVHAEHHSCFMASTLRTTFSLDIPPDASPAFQAS 789
                 9999775...55666889*******999999*****************976 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.054   3.3e+02       7      31 ..      15      39 ..       9      42 .. 0.81
   2 !    5.1   0.0    0.0048        29      74     113 ..     480     515 ..     458     543 .. 0.73
   3 !    8.5   0.0   0.00043       2.6       9      95 ..     700     786 ..     694     810 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.054
                EEEEES-SEEETT--EEEEEEEEE- CS
  Arrestin_C  7 leaslpkkgyvpGetipvtvkidnd 31
                + ++ ++ +++ Ge  +vt++++n 
  CDO70945.1 15 VVVTPSQASFFAGEPFSVTITFTNT 39
                556667899*************996 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0048
                 TTEE.EEEEEEE.----B-----S---EEEEEEEEEEEEE CS
  Arrestin_C  74 aakdkletevelqiPeeltpssarnvelikvsYklkvklt 113
                 +++++   +++l +P++l+p+    ++++k sY++ + ++
  CDO70945.1 480 GESRT--YTYSLVLPDNLPPTF--RGRALKFSYQFILGVC 515
                 44444..55*************..8********9866655 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00043
                 EEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS.....SEEEEEEEEEEEEE---B-TTEE.EEEEEEE.----B---- CS
  Arrestin_C   9 aslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnr...snkkeknvvaksdsvkvtsaakdkletevelqiPeeltpss 95 
                 +++pk++y  Geti   v+ +   s+ +v k+++ l+ h +  ++     s+++ ++v a+++s+        +l t+++l+iP+++ p+ 
  CDO70945.1 700 LTFPKSAYRLGETILGVVETNeRASRARVLKLSAMLEAHESLPSNIAslaSSRQLRRVHAEHHSCFM----ASTLRTTFSLDIPPDASPAF 786
                 579******************77*************9999998885556555555555555555544....66677889999998888744 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00047       2.8      92     119 ..     483     510 ..     467     526 .. 0.87
   2 ?    1.5   0.0     0.045   2.7e+02       7      43 ..     702     737 ..     697     768 .. 0.75
   3 ?   -3.0   0.0       1.1   6.7e+03      95     109 ..     773     787 ..     743     819 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00047
                 TEEEEEE---TTS--SECSGEEEEEEEE CS
  Arrestin_N  92 hafpFsfelPknlpsSfeGkaggvrYev 119
                  ++++s+ lP+nlp++f G+a +  Y++
  CDO70945.1 483 RTYTYSLVLPDNLPPTFRGRALKFSYQF 510
                 489******************9999976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.045
                 -SEEEEETT--EEEEEEE-CCCCTT.CEEEEEEEEEE CS
  Arrestin_N   7 krdevyhpgetvdGkvlleteelkkarkvkielsgka 43 
                  ++  y+ get+ G+v   +e++ +ar +k+++  +a
  CDO70945.1 702 FPKSAYRLGETILGVVET-NERASRARVLKLSAMLEA 737
                 68899*********9874.555566677777665555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.1
                 EEEE---TTS--SEC CS
  Arrestin_N  95 pFsfelPknlpsSfe 109
                 +Fs+++P+++ + f+
  CDO70945.1 773 TFSLDIPPDASPAFQ 787
                 799999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 5313.70
//
Query:       CDO70946.1  [L=658]
Description: hypothetical protein BN946_scf184829.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-83  281.5   4.6    2.2e-67  227.6   0.1    2.0  2  TrkH      Cation transport protein


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   1.3   2.9e-19   5.2e-15     118     233 ..     193     313 ..     188     317 .. 0.89
   2 !  227.6   0.1   1.2e-71   2.2e-67     240     497 ..     355     623 ..     351     627 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 2.9e-19
        TrkH 118 lgrgsafl..ylseaqkeelggkelrslselikilvv.yyvgleilafvllvvliytakaysevvdstg..vsplwwaffhsmSafnnlGfsltpnSla 211
                 +gr+s f+  +l+ +q eelgg+e+r+l++l+ i+++ y++g + ++f+l+ ++++t+++y  v  s+   v++ w  +f  + a + +G+sl ++ ++
  CDO70946.1 193 IGRNSEFYieELTDEQLEELGGIEYRALRLLSYIVILqYFIGTQMISFILIAPWLSTTHTYDGVFASQPrlVNKSWFTVFQIVGAYTGGGMSLVDAGMV 291
                 899999994446778999***************99984667899********************88765237899************************ PP

        TrkH 212 sfnknivillvaiifiilGnig 233
                 +f++++++ +++i++i++Gn g
  CDO70946.1 292 PFQTAYLMIFAMIFVILAGNHG 313
                 ****99999999*******965 PP

  == domain 2  score: 227.6 bits;  conditional E-value: 1.2e-71
        TrkH 240 viiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllelavlnvtdnilfilldegslvvksipkgsrvlkalFqsvstrtaGFsvvdlsn 338
                  i+++  k ++    +  +l flld+prrcf+ l++s ++w l  +l+  ++++ + fi+ld g +v +s++ g+rv+++lFqs + r  GFs+v++++
  CDO70946.1 355 WISWVYTKFVKPNTPKDAALDFLLDHPRRCFLYLFPSHVTWYLTATLITFTIIELVCFIVLDIGLQVTDSLSPGTRVVAGLFQSFAVRASGFSIVSIAS 453
                 5677777777666677789******************************************************************************** PP

        TrkH 339 lhpaikvllvlmmyigglpgStaggIrrtnvyeefslgkyeieqekepkav........skksidgk...hlerqllvdlwslflvlliilileglkls 426
                 l+p+ ++l v+mmyi  +p  +a +Ir+tnvyee slg+ e++ e+e++ +        ++ +i++    hl+rql +d+w l++ +++++i+e  k+ 
  CDO70946.1 454 LAPSFQFLCVIMMYIAIYP--VALSIRSTNVYEEKSLGVFEASPEDEDE-EpnlderqpRHERIGKYfswHLRRQLAFDIWWLVFAIFAVCIIERTKIM 549
                 *******************..*******************999999988.55679999977888874444*************************9996 PP

        TrkH 427 .dvqepdfsffdiLfevvSaygtvGLSlG.a.knaslsaqlttisklvlialmirGrlrglpvlldraillpsd 497
                  d++ p f++f i fe vSa+g +GL lG + +n s+s  + ++sk+v i++m+rGr+rglpv++draillp d
  CDO70946.1 550 dDENAPWFNVFRIVFELVSAFGGIGLTLGiPtQNYSFSGAFGPVSKIVVIIIMVRGRHRGLPVAIDRAILLPED 623
                 257789************************99****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.36s 00:00:01.10 Elapsed: 00:00:00.56
# Mc/sec: 3508.71
//
Query:       CDO70947.1  [L=274]
Description: hypothetical protein BN946_scf184829.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-06   27.3   3.1    5.2e-06   26.9   0.5    2.1  2  PCI       PCI domain
  ------ inclusion threshold ------
      0.023   14.4   2.4      0.039   13.7   2.4    1.3  1  DSBA      DSBA-like thioredoxin domain
      0.026   14.1   0.1      0.052   13.1   0.1    1.5  1  DUF3452   Domain of unknown function (DUF3452)


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.5   8.7e-10   5.2e-06      31     103 ..      65     138 ..      34     139 .. 0.85
   2 ?    0.2   0.1      0.17     1e+03      26      58 ..     176     208 ..     144     213 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 8.7e-10
                 HHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH.HHHHHHHHHHHHTTSSSEEEETTTTEEEE CS
         PCI  31 addglaqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIrdgeirakidqesgivvf 103
                 ++d l  l e    k+++ +l ++++  + +++++l + ld+s+  e+E +++++I+++ +r+k+dq++g +++
  CDO70947.1  65 HKDVLPALNEAQTIKLKQLSLVSLAQNSRILPYDELLRVLDMSTvRELEDLIIDAIYSDIVRGKLDQKQGQFEV 138
                 44455556677788899999999999******************************************998776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
                 HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCE CS
         PCI  26 eeelladdglaqllesLekkvrerllrqvskiy 58 
                   el  +  +a+  ++ ++kv++ +lr+v++++
  CDO70947.1 176 LTELSTRAVMAKNEKEQYDKVYQATLREVAEKQ 208
                 344455556666777888888888888888765 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.4   6.5e-06     0.039      50     158 ..     143     250 ..     128     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.5e-06
                 .GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTS.H CS
        DSBA  50 gpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldeales.e 147
                 g+   p kl++ll+ l+++a      l    +k   ++   r+++a +++++++kv+++  + + +++++ + +++ + +  + G+  + l+e+  + e
  CDO70947.1 143 GRDLEPGKLEELLQSLQNWASTTSSVLATLDQK--LTELSTRAVMAKNEKEQYDKVYQATLREVAEKQKEARNASKPQNFTGRTGVTPAGLAELARErE 239
                 3444899************99988887777777..688889999******************************************9988887765536 PP

                 HHHHHHHHHHH CS
        DSBA 148 avkeavrenta 158
                 ++++  re+ +
  CDO70947.1 240 RHQQREREKVK 250
                 77777666655 PP

>> DUF3452  Domain of unknown function (DUF3452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.7e-06     0.052      22      88 ..     151     218 ..     148     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.7e-06
     DUF3452  22 ikqFfkklkkwadma.nldeelrqeieelernfsvttvifkkYrqiFeelFlspadkeskrskknsaa 88 
                 +++ ++ l++wa+ + ++ ++l+q++ el +++++ ++  ++Y+++++  +++ a+k+++ ++ ++++
  CDO70947.1 151 LEELLQSLQNWASTTsSVLATLDQKLTELSTRAVMAKNEKEQYDKVYQATLREVAEKQKEARNASKPQ 218
                 6778899****6655156799*******************************9994444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1492  (0.0832171); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.54
# Mc/sec: 1519.44
//
Query:       CDO70948.1  [L=505]
Description: hypothetical protein BN946_scf184829.g57, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-50  171.7   0.3    1.2e-49  169.8   0.3    1.7  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.3   6.9e-54   1.2e-49      47     415 ..      89     495 ..      89     499 .. 0.75

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 6.9e-54
                    --TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EETTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEE CS
  Peptidase_S10  47 nGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSysntksdvktddeevaedlyefLkkffekfpeyksrdfyitG 142
                    +GGPGCsSl+G+l+E+GP+++   ++ ++  np+sW++++nvl+++qPvG+GFS  + + +   +d+e a+++  fL++f+e f e+k ++f+++G
     CDO70948.1  89 DGGPGCSSLEGFLQENGPISWS-WGQAEPTPNPWSWTNLSNVLWVEQPVGTGFSQGEPNIS---NDDELAAQVAGFLQQFLEVFGELKGSNFWVSG 180
                    5*********************.567********************************888...9******************************* PP

                    ETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH..........HHHHTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHH CS
  Peptidase_S10 143 ESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve..........fayehgliseeeyeslkkacekkeeleqesekcanl 228
                    ES   + vP++a+ ++++        + L+G+ i ++ +      ++++           f ++ ++    ++++++++c ++++l++ +   + +
     CDO70948.1 181 ES---IDVPYIANYLYEHPGI---VDLRLHGIWIADPSLTWGLVQQEIPAlrfaqanknvFPFNSSFWA--QLQNISDSCGYTDYLDSVTYPPKGQ 268
                    **...78***********966...69**********987654433333334554455544444444444..6777888888885555444444444 PP

                    HHHHHHHH.......................HHHHCHCEETTETTSEETTSSEE...................HHHCTTCCCCTTTTTCHHHHHHH CS
  Peptidase_S10 229 lekaskva.......................vekenkglnvynileeccklkae...................lkksstdaqggedpydesyveky 282
                    l      +                       v   n  ++vy ++        +                   +++s ++ + +++ + e    k+
     CDO70948.1 269 LPLPVGATfnettravgvrpecrihspiqraVGVINPVFDVYRVTD-------TfpnlwsvlgfprstqkfiyFNRS-VR-TISNMFHIEVTCLKF 355
                    4433332222222222333333333332222222223444444444.......144556778888888887643333.33.33444445566789* PP

                    HTSHHHHHHTT--TTSSS--SB-H.HH......HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEE CS
  Peptidase_S10 283 lnkkeVrkalhvnasvkkweecnd.sv......feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevs 371
                    ++   V+ka+h+  + ++we+c d sv          +d++  s+ ++l++++e++ rv i  G +D+i    gt+  i++++++gk++f++  + 
     CDO70948.1 356 AELTCVQKAIHA--PHITWEACADrSVyinpvtGGPGNDQSVASTLSVLPNVIEKSERVAIVHGLADFILVAEGTRIAIQNMTWNGKQGFQTPIEP 449
                    ***********5..68*******96669999876677888999***********************************************998774 PP

                    E..TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHH CS
  Peptidase_S10 372 p..kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqller 415
                    +    en  + G+++  ++l+f++ + +GHm P++ p +a+q +  
     CDO70948.1 450 EtfLVENMGTFGNMHIERGLAFVEFYYSGHMTPQFVPWAAFQTIAY 495
                    4446666667777777799**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.51
# Mc/sec: 2986.07
//
Query:       CDO70949.1  [L=264]
Description: hypothetical protein BN946_scf184829.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00015   21.6   0.1     0.0087   15.8   0.1    2.1  1  PRK         Phosphoribulokinase / Uridine kinase family
     0.0015   19.1   0.0     0.0037   17.8   0.0    1.7  1  AAA_18      AAA domain
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.016   14.2   0.0    1.2  1  MeaB        Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.022   15.1   0.1      0.034   14.5   0.1    1.4  1  AAA_16      AAA ATPase domain
      0.035   14.2   0.1       0.06   13.4   0.1    1.3  1  MMR_HSR1    50S ribosome-binding GTPase
      0.039   13.4   0.0      0.059   12.8   0.0    1.2  1  KTI12       Chromatin associated protein KTI12
      0.043   13.0   0.0      0.064   12.4   0.0    1.2  1  NB-ARC      NB-ARC domain
      0.048   14.0   0.0       0.17   12.2   0.0    1.9  2  Phage_CI_C  Bacteriophage CI repressor C-terminal domain
      0.058   13.6   0.3       0.11   12.7   0.0    1.6  2  AAA_33      AAA domain
       0.19   11.0   0.0       0.31   10.3   0.0    1.3  1  Zeta_toxin  Zeta toxin


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.9e-06    0.0087       2     138 ..      27     189 ..      26     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.9e-06
         PRK   2 IgvagsSGaGkttvarklekifgrekvkaaei.....................egdsflrldraekdl.eleerkrakekevsflspeandfdllyevl 78 
                 +g+ag  ++Gk+t+a+ l+++++ ++  + +                       +d  + +   ++   +++ ++++  ++ +f++     f    +  
  CDO70949.1  27 VGIAGVPASGKSTLAQLLVNRVNAAATGSSSHehshsafgagarsdkpiavyvGLDGWHLTRAQLDAFpNPKLAHDRRGAHWTFDGEGYVAFIRALREP 125
                 899******************997776665557888999999998888888863333333333222222444455556667888888888887666665 PP

         PRK  79 kelkegkkvdkpiYsheteeaapdkeeliegadvlviEGlhalyder....vaelldlkiyvdi 138
                  +    k v  p +she+++  p+   +     +++iEGl+ +         aelld + y+di
  CDO70949.1 126 ITASGEKIVYAPSFSHEKKDPIPEAIAVYPHHRLVIIEGLYTFLNIPpwsaAAELLDERWYIDI 189
                 55566678899999999999999666666667899******99987777778888888877776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.1e-06    0.0037       1      23 [.      27      49 ..      27      73 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlg 23
                ++++G+p++GK+tla+ L +r +
  CDO70949.1 27 VGIAGVPASGKSTLAQLLVNRVN 49
                78****************88853 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   8.9e-06     0.016      15      53 ..       9      48 ..       3      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.9e-06
                HHHHHHHHGGG-S-SE.EEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 15 akellerllakaGraq.vvGltGvPGaGkstlvealglel 53
                a+ ll+rl +++   +  vG+ GvP +Gkstl + l+ ++
  CDO70949.1  9 AQYLLDRLKDTSSDGRfLVGIAGVPASGKSTLAQLLVNRV 48
                7889999988776554269*************98887665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.9e-05     0.034      12      60 ..      12      56 ..       5     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkc 60
                Ll+ l++++s++  lv + G +++GKs+l++ l ++++++    ++g  
  CDO70949.1 12 LLDRLKDTSSDGRFLVGIAGVPASGKSTLAQLLVNRVNAA----ATGSS 56
                56667755555557999****************9999988....33333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.3e-05      0.06       2      24 ..      27      50 ..      26      66 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
                EEEEESTTSSHHHHHHHHHTS.TE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.ka 24
                v+i+G p +GKStL + l+++ +a
  CDO70949.1 27 VGIAGVPASGKSTLAQLLVNRvNA 50
                89*****************98533 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.3e-05     0.059       3      34 ..      26      59 ..      25      74 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.3e-05
                EEEEE--TTSSHHHHHHHHHHHHHH..TT--EEE CS
       KTI12  3 LvvltGlPssGKstrakeLakalee..ekrsvvv 34
                Lv + G+P+sGKst+a+ L + +++  ++ s + 
  CDO70949.1 26 LVGIAGVPASGKSTLAQLLVNRVNAaaTGSSSHE 59
                7889***************998887444444444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.6e-05     0.064       7      43 ..      11      47 ..       5      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
                HHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  7 kviekLlekdelqslvvalvGmgGvGKttlakqilnk 43
                 + ++L    + ++++v++ G + +GK+tla+  +n 
  CDO70949.1 11 YLLDRLKDTSSDGRFLVGIAGVPASGKSTLAQLLVNR 47
                56788888888999*****************988876 PP

>> Phage_CI_C  Bacteriophage CI repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.2e-05      0.17      36      65 ..       4      33 ..       2      58 .. 0.79
   2 ?   -2.7   0.0         4   7.1e+03      50      62 ..     178     190 ..     175     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.2e-05
  Phage_CI_C 36 ieeekklylvdkkeadvsdGkwLvdieGrl 65
                i +e + yl+d+ ++  sdG++Lv+i G  
  CDO70949.1  4 IADELAQYLLDRLKDTSSDGRFLVGIAGVP 33
                6778899********************974 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
  Phage_CI_C  50 advsdGkwLvdie 62 
                 a++ d +w +di 
  CDO70949.1 178 AELLDERWYIDIG 190
                 5778889999984 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     6e-05      0.11       2      23 ..      27      48 ..      26     100 .. 0.83
   2 ?   -2.7   0.1       3.3     6e+03     104     130 ..     187     213 ..     177     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
      AAA_33  2 vllvGlpGsGKstlaerllkkl 23
                v + G+p+sGKstla+ l+++ 
  CDO70949.1 27 VGIAGVPASGKSTLAQLLVNRV 48
                6678************998665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
      AAA_33 104 vetdeetlkeRlakRaangddrsevpe 130
                 ++  e+++++Rl  R  +++++ + +e
  CDO70949.1 187 IDIGEKEAERRLVMRHVRTGVAKNIEE 213
                 556677788888887776666555554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017      0.31      15      41 ..      23      49 ..      10      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
  Zeta_toxin 15 rPklillgGqpGAGKselaellkdele 41
                   l+ ++G p++GKs+la+ll ++++
  CDO70949.1 23 GRFLVGIAGVPASGKSTLAQLLVNRVN 49
                5567889**************998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1870.68
//
Query:       CDO70950.1  [L=837]
Description: hypothetical protein BN946_scf184829.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 5247.46
//
Query:       CDO70951.1  [L=380]
Description: hypothetical protein BN946_scf184829.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   31.7  10.0     0.0037   17.7   6.4    2.5  2  zf-C2H2     Zinc finger, C2H2 type
    5.2e-06   26.7  11.8    2.7e-05   24.4   0.2    3.4  4  zf-H2C2_2   Zinc-finger double domain
     0.0076   17.0  11.6       0.13   13.1   0.4    2.6  2  zf-C2H2_4   C2H2-type zinc finger
  ------ inclusion threshold ------
      0.025   14.5   1.4      0.025   14.5   1.4    2.3  2  zf-C2HC_2   zinc-finger of a C2HC-type
       0.25   11.1   6.9       0.27   11.0   0.1    2.8  3  zf-C2H2_11  zinc-finger C2H2-type
        0.7   10.4   7.6       0.41   11.1   2.9    2.3  2  zf-C2HE     C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   6.4   1.2e-06    0.0037       1      23 []     155     177 ..     155     177 .. 0.95
   2 !   15.3   0.1   6.9e-06     0.021       1      22 [.     183     204 ..     183     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C  C+ksF r+s Lk+H+ +H
  CDO70951.1 155 HHCWMCHKSFDRPSTLKKHLLVH 177
                 67******************999 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.9e-06
                 EEETTTTEEESSHHHHHHHHHC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                 + C+ Cg++F   snL+rH +t
  CDO70951.1 183 FACESCGRRFGVASNLNRHAKT 204
                 78*****************875 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.6   1.1e+04       9      16 ..      86      95 ..      84      95 .. 0.73
   2 !    9.1   0.3   0.00064       1.9      12      25 ..     152     165 ..     149     166 .. 0.84
   3 !   24.4   0.2   8.9e-09   2.7e-05       2      24 ..     170     192 ..     169     193 .. 0.95
   4 ?   -1.1   0.1         1     3e+03       1       7 [.     197     203 ..     197     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.6
   zf-H2C2_2  9 Ht..gekpye 16
                H+  ge+p++
  CDO70951.1 86 HKdpGETPFT 95
                555599*996 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00064
   zf-H2C2_2  12 ekpyeCplCdkaFk 25 
                 +k ++C+ C+k+F 
  CDO70951.1 152 KKTHHCWMCHKSFD 165
                 567**********7 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 8.9e-09
   zf-H2C2_2   2 LrrHirkHtgekpyeCplCdkaF 24 
                 L++H+ +Htgek + C++C+ +F
  CDO70951.1 170 LKKHLLVHTGEKAFACESCGRRF 192
                 89*******************99 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1
   zf-H2C2_2   1 nLrrHir 7  
                 nL+rH +
  CDO70951.1 197 NLNRHAK 203
                 8****76 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   5.1     0.003         9       5      23 ..     159     177 ..     153     178 .. 0.88
   2 !   13.1   0.4   4.4e-05      0.13       1      22 [.     183     204 ..     183     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
   zf-C2H2_4   5 iCgksFsskkaLlrHlkth 23 
                  C+ksF ++++L++Hl+ h
  CDO70951.1 159 MCHKSFDRPSTLKKHLLVH 177
                 6***************998 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.4e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 f C+ Cg++F   ++L+rH kt
  CDO70951.1 183 FACESCGRRFGVASNLNRHAKT 204
                 89********99999****997 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.9     0.067     2e+02       8      21 ..     160     174 ..     153     176 .. 0.84
   2 ?   14.5   1.4   8.4e-06     0.025       4      25 .]     184     206 ..     183     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.067
   zf-C2HC_2   8 CgRsF.npdrlekHe 21 
                 C  sF  p+ l kH 
  CDO70951.1 160 CHKSFdRPSTLKKHL 174
                 99************6 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8.4e-06
   zf-C2HC_2   4 pCpkCgRsF.npdrlekHepvCk 25 
                  C+ CgR+F  ++ l +H + C+
  CDO70951.1 184 ACESCGRRFgVASNLNRHAKTCR 206
                 6********99999********6 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.3     0.097   2.9e+02       4      25 ..     154     175 ..     152     177 .. 0.83
   2 ?   11.0   0.1   9.2e-05      0.27       4      23 ..     182     201 ..     180     203 .. 0.90
   3 ?   -2.8   0.0       1.9   5.6e+03      13      18 ..     226     231 ..     225     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.097
  zf-C2H2_11   4 tcqCleCGlcftSqlsLsRHlf 25 
                 t+ C  C   f     L++Hl 
  CDO70951.1 154 THHCWMCHKSFDRPSTLKKHLL 175
                 8999999999999999999984 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.2e-05
  zf-C2H2_11   4 tcqCleCGlcftSqlsLsRH 23 
                 ++ C  CG+ f  +  L+RH
  CDO70951.1 182 AFACESCGRRFGVASNLNRH 201
                 567***************** PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.9
  zf-C2H2_11  13 cftSql 18 
                  ftSq+
  CDO70951.1 226 AFTSQP 231
                 5***97 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.9   0.00014      0.41      32      61 ..     149     177 ..     132     180 .. 0.80
   2 ?    1.3   0.2      0.16   4.8e+02      37      48 ..     182     193 ..     178     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
     zf-C2HE  32 lilktpLkCtrCganfgnkfpkLKeHLeee 61 
                  ++k+  +C+ C+ + +     LK+HL  +
  CDO70951.1 149 DVKKKTHHCWMCH-KSFDRPSTLKKHLLVH 177
                 4489999******.888999*******988 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
     zf-C2HE  37 pLkCtrCganfg 48 
                  + C +Cg++fg
  CDO70951.1 182 AFACESCGRRFG 193
                 689*****8886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2459.98
//
Query:       CDO70952.1  [L=771]
Description: hypothetical protein BN946_scf184829.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-11   43.3   0.0    6.7e-11   42.1   0.0    1.6  2  BAH          BAH domain
    3.2e-10   39.9   0.5    3.5e-05   23.8   0.2    3.5  2  Bromodomain  Bromodomain
  ------ inclusion threshold ------
        8.8    5.4  10.8        1.6    7.8   3.1    2.1  2  SOG2         RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5   9.2e+03      47      71 ..      42      71 ..      21      87 .. 0.58
   2 !   42.1   0.0   1.1e-14   6.7e-11       3     122 .]     410     533 ..     408     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
                ECGGGS....TTTTHCCCT.TEEEEEEEEE CS
         BAH 47 lrpeet....ksalklrqk.rElfltrqse 71
                ++pe +    k+ l++++  + +fl + + 
  CDO70952.1 42 SWPEYYenkyKDPLQAYEDlNLVFLNALYY 71
                677666543333333444377777766555 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 1.1e-14
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTST.CEEEEEEEEEEECGGGS.TTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHCH. CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakne.eaeatvlvdwflrpeet.ksalklrqkrElfltrqseilplaairgkcrVvllsdleeaqnylp. 98 
                 ++v d++ +++ ++  ++ i+++ + ++ +  + + +  v v+w++rpe+t + a + + ++E+f t + +++p+++i +k+ V  +++    ++++p 
  CDO70952.1 410 VKVADWLHLSNPDDPSRPIIGQVFKSFKWEEGQrKGQPGVSVCWYYRPEQTfHPASRKFWEKEVFKTSHFADHPVEDIVEKVAVQFTARHLRGRPRPPf 508
                 6788999999999999******98875554444478999************9999999999*************************************8 PP

                 .HCSTTEEEEEEEEETTTTEEEE-S CS
         BAH  99 .kklddtFycslvydptaktfkkdk 122
                        ++c++ y+  +++f+k+k
  CDO70952.1 509 wYPGWPLYVCDSRYNDRDRVFVKIK 533
                 8778899***************987 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   5.9e-09   3.5e-05      48      83 ..      48      83 ..      18      84 .. 0.90
   2 !    8.2   0.0   0.00044       2.6      43      80 ..     300     337 ..     295     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.9e-09
                 TT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain 48 snkYksladfeadlkllfsNarkyngegsviyelae 83
                 +nkYk + + ++dl+l+f Na +yn++gs+i ++a+
   CDO70952.1 48 ENKYKDPLQAYEDLNLVFLNALYYNEPGSQISKDAT 83
                 69*******************************997 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00044
                  HHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHH CS
  Bromodomain  43 kkklesnkYksladfeadlkllfsNarkyngegsviye 80 
                  +++ + + Y+s ++f +++++lf  ar++++ gs++y 
   CDO70952.1 300 QSRTRMKYYGSSQAFDKEMSQLFLKARRWYELGSEPYG 337
                  56778999*************************99985 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1   0.00027       1.6     267     341 ..      92     170 ..      29     211 .. 0.56
   2 ?    2.2   0.9     0.014        83     296     342 ..     591     634 ..     551     712 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00027
        SOG2 267 ersasssgvqssasstPlgegstspp..galsrqslsttgststltsssksrsssrsnt.....nasastprslattpappa 341
                 e+++  s+++ ++ s P +++++++    +++r+++s   + s+++  ++  ++s+ +t     n++ ++p+s++ t+a+ a
  CDO70952.1  92 EWKQR-SVLPAPPASAPSSSAQKTHAkkDQPERAAASP--APSKHQPAAQAPKASTKATapspmNVDPTPPSSSQPTEATIA 170
                 33333.23444444445555444443212222222221..111222222222211221112233444444444444444222 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.014
        SOG2 296 srqslsttgststltsssksrsssrsntnasastprslattpappas 342
                 +++++ tt+++++++  +++ +++r+   as +t +s++   +++++
  CDO70952.1 591 KQENP-TTTRKRPQRKAAQKVEAERAG--ASRTTASSQPAPVPATNT 634
                 11111.122222223333333333332..222222222211111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 5062.66
//
Query:       CDO70953.1  [L=391]
Description: hypothetical protein BN946_scf184829.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-13   49.3   0.2    4.9e-12   45.8   0.2    2.3  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.2   2.7e-16   4.9e-12       3     314 ..      28     372 ..      26     378 .. 0.71

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.7e-16
                  -EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHH..CCCHHHT.........CCCCCCHHHHHHCCCCCH.CT CS
  A_deaminase   3 pKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydls..vdvlvlh.........wlievvrllavekakdla.kd 88 
                   K++lH Hl+g++    l +la+  + +    +++++ e +    + ++     ++ l+  v ++ +h                  ++  +   + + 
   CDO70953.1  28 SKAELHAHLNGSIPSPVLQQLAADFLTS--TSDSAHSREIASAPSSSPDAVRAGIRRLQdgVVLDEIHdffglfpaiY--------TITSTPTTLrRA 115
                  6999999999999999999999888877..333344444444455555555555566552233444554443333331........333333333033 PP

                  TCCCCCCCCSHHHHH...........HH-GC.STCCHHHHCCCCCCCCCCHCCT-EEEEEEC.CETTTCCGHCCCHHHHHHCCCC..CCCCCCCCC-T CS
  A_deaminase  89 fvkylevifsPlfea...........tagpq.lpelevvlkvvdgfdsvedeskvkerlilv.ksrkpeewseeinelasyyrdy..tvvnldllnde 171
                     +le + +P+ e            +  p+  p  + ++ +++ +d+ve+     + li++ + r+ +  ++e +e a++ ++    vv++dl +d+
   CDO70953.1 116 TRAVLEHFLEPHAENgghpqaaylelRSTPReTPAMSRMQYIETVLDEVERYAPERAALIVSlDRRMDSRTAAECVECAVALKKAgrRVVGVDLCGDP 213
                  3344555555555555555555566677888899999999999*******99887666666514555999999999988877765449********** PP

                  TSTTGGG...HHHHHCCCCHTT-EEEEEESSSS-.CHHH........HHH..HHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST- CS
  A_deaminase 172 kiepasl...flklraeagkstllltpHaGEagg.lehv........veA..llllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafl 255
                  + ++a +   f++++++a +++l +t H  E+ + ++++        +e+  ll +k +r+gH + l +++  ++    +++ +e+c +SN   +++ 
   CDO70953.1 214 RVNTAGNmdeFKEHFRNAKAAGLGVTLHIAEVSPrIPSMpatpecpsAETlqLLSCKPDRLGHATFLDDAA--KEIVHTDEMCIEICLSSNLLCKTVP 309
                  *999987789*********************9863333311111122344334556779****88876655..689999******************* PP

                  TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHHHHHH..H..T--HHHHHHHHHHHHHC CS
  A_deaminase 256 eyaenPlkeflerglnvslntDDPlqfgttLieeYaiaaqv..f..klseedlaelarNsvkq 314
                  +++++ ++ ++ ++ ++++ tDD l f  +L  eYa +     +  +l+e++  ++a+ ++ +
   CDO70953.1 310 TLDAHHIRYYIGHNHPIAICTDDILPFRNSLLGEYALLMARppLglGLTEAEVEKIAKMGMDS 372
                  ***********************************9765432233489999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2771.20
//
Query:       CDO70954.1  [L=334]
Description: hypothetical protein BN946_scf184829.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-31  110.0   6.0    1.5e-31  110.0   6.0    1.8  1  DUF3752   Protein of unknown function (DUF3752)


Domain annotation for each model (and alignments):
>> DUF3752  Protein of unknown function (DUF3752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   6.0   8.4e-36   1.5e-31      32     152 .]     200     327 ..     191     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 8.4e-36
     DUF3752  32 gdsslWteTPeekakrladevlgrkekaaaaaaake....akekkreeeetaekvkeynekkRgksLveehqekkkkkkkk..eeeeddpskraFDrek 124
                 g +slWteTP+e+++r adev g++++aa+ +++++    a++++r eee ++ v+e+++k Rg +L+e+h++ ++ k+++  ++ e+d++ +++D+++
  CDO70954.1 200 GYNSLWTETPAERQQRIADEVAGKRRRAADVDPTEDtdpdARKRRRYEEEVRRGVEEHTKKVRGPTLIEQHERLSSVKEAEkaRSGETDEPPAIWDHSR 298
                 679***************************999999999977777778************************99887766667899************* PP

     DUF3752 125 Dmal.grriskaqrkellkkaadfgsRFs 152
                 Dmal gr ++++ r++++k+a+++g+RF+
  CDO70954.1 299 DMALgGRLMDDKTRDKFIKEARGLGDRFG 327
                 ****9999********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2580.51
//
Query:       CDO70955.1  [L=289]
Description: hypothetical protein BN946_scf184829.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-50  169.3   2.9    1.2e-47  162.5   2.9    2.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    8.4e-45  152.6   0.8      1e-44  152.3   0.8    1.1  1  adh_short      short chain dehydrogenase
      9e-15   55.0   0.1    1.3e-14   54.6   0.1    1.2  1  KR             KR domain
  ------ inclusion threshold ------
      0.011   15.8   0.3       0.02   15.0   0.3    1.4  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
      0.013   15.4   0.2       0.02   14.8   0.2    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   2.9   3.3e-51   1.2e-47       1     232 [.      30     286 ..      30     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 3.3e-51
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHH....SSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekf....gklDilvnnagiapklkgpflets 91 
                   Gaa+gIGr +A ++a+eGa+vv+tdl+e++ +  v+e+++++g + ++  DV+ ++  e++++++ +++      ++ +vnnag++ +    +++t+
    CDO70955.1  30 GAAQGIGRSCALLFAKEGAKVVVTDLDEKKaQVVVDEIKSAGGDAlAVGGDVAADDFPEKVISATIKSVvlpsPPINHIVNNAGFTYD--RMLHTTP 124
                   9*****************************88888999998888856**********999999999998888899*************..999999* PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   +e fd ++ v +++ f+l++aa+p+m+ +      si+n+ss+++  +  +++ y+aaK a+++lt+++++e+g  g+R N+v+ g+++T++++  +
    CDO70955.1 125 DEAFDIIIRVHVRAPFRLIRAAAPHMRIKgntenRSIINVSSTSGLHGNVGQANYAAAKSAVIGLTKTVCKEWGTFGVRANTVAFGFVQTRLTAPKE 221
                   ************************887443677799********************************************************88877 PP

                   THHHHHHHHHH................HSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 184 gfdelleelea................raplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   + ++++ + ++                 +plgr++tp+e a  +lfLas++as+++G+tl v gG
    CDO70955.1 222 NGEAIEVNGKKvalgiptgnrgpnpfaAIPLGRAATPDEAAGGVLFLASPLASFVSGHTLEVTGG 286
                   755544333321111111222222222799**********************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.8   2.9e-48     1e-44       2     192 ..      25     222 ..      24     225 .. 0.97

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 2.9e-48
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH....SSESEEEE---SS--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl....gkldvLvnNAGitgsgpfsel 96 
                 v+++tGa++GIGr +a  +akeGakvvv+d  e+k++ v++e+k++g +ala+ +Dv+  +  e+++++ +k +     +++ +vnNAG t +++ + +
  CDO70955.1  25 VAIITGAAQGIGRSCALLFAKEGAKVVVTDLDEKKAQVVVDEIKSAGGDALAVGGDVAADDFPEKVISATIKSVvlpsPPINHIVNNAGFTYDRMLHTT 123
                 89**********************************************************9999999999999889999******************** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  97 seeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                  +e+++ +i v + ++f l+ra++p+m    + ++ +I+nvsS+ g+ ++ g+a Y+A+K av+glt+++ ke+ + g+r n+va G+v+T +++++++
  CDO70955.1 124 PDEAFDIIIRVHVRAPFRLIRAAAPHMRikgNTENRSIINVSSTSGLHGNVGQANYAAAKSAVIGLTKTVCKEWGTFGVRANTVAFGFVQTRLTAPKEN 222
                 ***************************999888999*********************************************************998766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1   3.5e-18   1.3e-14       4     159 ..      27     189 ..      25     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 3.5e-18
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS....S---EEEE---------TT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee....ppikGvihaAgvlrdklle 98 
                 +itG++ g+G++ a   a++ga+ +v        +++++  ++e+++ g +  +v  Dv+  d  e+++++  ++     ppi+ +++ Ag++ d++l 
  CDO70955.1  27 IITGAAQGIGRSCALLFAKEGAKVVVT-DL---DEKKAQVVVDEIKSAGGDALAVGGDVAADDFPEKVISATIKSVvlpsPPINHIVNNAGFTYDRMLH 121
                 8********************996664.33...34667779********************9999998877766655667******************* PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT.......S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHH CS
          KR  99 emtaedleqvlapKvkGawnLhelled.......esldffvlfSSiagllgsagqanYaaaNaflDal 159
                 ++ +e+++ +++  v++   L ++ ++       ++   ++ +SS +gl g+ gqanYaaa + + +l
  CDO70955.1 122 TTPDEAFDIIIRVHVRAPFRLIRAAAPhmrikgnTENRSIINVSSTSGLHGNVGQANYAAAKSAVIGL 189
                 *****************9999998887788887788899**********************9876444 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.3   5.6e-06      0.02      20      59 ..      20      60 ..      12      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.6e-06
                   --TTSEEEEE--SH.HHHHHHHHHHHCT-EEEEE-S-HHHH CS
  AdoHcyase_NAD 20 llaGkvavvaGyGd.vGkGcaaslkglGarvivtevdPica 59
                   llaG va+++G  + +G+ ca  + + Ga+v+vt++d   a
     CDO70955.1 20 LLAGEVAIITGAAQgIGRSCALLFAKEGAKVVVTDLDEKKA 60
                   89*********87549********************97655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   5.7e-06      0.02      10      44 ..      35      69 ..      24      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-06
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekiek 44
                +G++ a +fa++g +Vv++d +e++++ + ++i++
  CDO70955.1 35 IGRSCALLFAKEGAKVVVTDLDEKKAQVVVDEIKS 69
                8****************************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1935.17
//
Query:       CDO70956.1  [L=323]
Description: hypothetical protein BN946_scf184829.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-88  295.7   0.8    5.5e-67  226.4   0.1    2.0  2  G-alpha       G-protein alpha subunit
    7.5e-11   41.8   0.7    1.5e-05   24.6   0.2    2.6  2  Arf           ADP-ribosylation factor family
     0.0055   16.5   0.1     0.0093   15.7   0.0    1.5  2  AAA_15        AAA ATPase domain
  ------ inclusion threshold ------
      0.014   15.4   0.1        3.1    7.9   0.0    2.5  2  MMR_HSR1      50S ribosome-binding GTPase
       0.04   14.4   0.5       0.12   12.9   0.3    1.8  1  ABC_tran      ABC transporter
      0.059   13.6   0.1        1.3    9.2   0.0    2.6  3  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.065   13.0   0.1       0.12   12.1   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
       0.11   11.6   0.0        0.2   10.9   0.0    1.4  1  COOH-NH2_lig  Phage phiEco32-like COOH.NH2 ligase-type 2
       0.13   11.7   0.7         17    4.9   0.0    2.9  2  GTP_EFTU      Elongation factor Tu GTP binding domain
       0.15   11.4   0.7          6    6.1   0.0    2.4  2  Gtr1_RagA     Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.1   3.1e-70   5.5e-67       3     246 ..      19     241 ..      17     243 .. 0.93
   2 !   68.8   0.1   2.5e-22   4.5e-19     271     351 ..     242     322 ..     241     323 .] 0.97

  Alignments for each domain:
  == domain 1  score: 226.4 bits;  conditional E-value: 3.1e-70
                 XXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCC CS
     G-alpha   3 tssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldpl 101
                  +++ +kslk+ + + +k  +vk+lllG+++SGKsTilkq++l+++  fs +e++++r+++++n+ + + +++ea+e  e e      ++e++  ++++
  CDO70956.1  19 LHREAEKSLKEAKLKLSK--QVKVLLLGSGDSGKSTILKQMRLIHRVPFSSQEIESYRQLVFNNLTHGLYSVIEAMEDMELEV-----SPENSWLVQKI 110
                 567788899999888888..**********************************************************88888.....56666666666 PP

                 S-HCHHHH..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEECT- CS
     G-alpha 102 kkveasliaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfevds 200
                 +++++ +           + + f+   e+++ +k+Lw+dp++q+ y r n+  l++n+ yF++dl+r+++p+Y+pt++Di+++r +t+Gi+et f ++ 
  CDO70956.1 111 QEASDIK-----------DGEPFPI--EYRDILKQLWEDPNVQAAYSRGNEAALPENLTYFFSDLDRLFDPSYQPTEQDIVQTRARTIGITETVFTLR- 195
                 6666553...........6789999..**********************************************************************9. PP

                 TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-T CS
     G-alpha 201 klefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyede 246
                 ++e+ +vdvgGq+ser+kW+++f+dv+ i+Flvsls++dq+l ed+
  CDO70956.1 196 DHEMLMVDVGGQKSERRKWIHCFQDVTSILFLVSLSGYDQCLVEDK 241
                 ********************************************98 PP

  == domain 2  score: 68.8 bits;  conditional E-value: 2.5e-22
                 EEEEEEE-HHHHHHHCCCS-GGGCCTT--H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHH CS
     G-alpha 271 piiLflnKlDileeKlkkgklskyfpsyegrkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvr 351
                 + iLflnK D++e+K+++++++++fp+++g++ d++   +y+r++F ++ ++ + ++r+iy+h+t+atdt+ ++ v+++v+
  CDO70956.1 242 DAILFLNKNDLFEKKVQHSDIKNFFPDFDGEPGDAKAGREYFRKRFARLAQKANAKEREIYIHVTTATDTAMLRVVMAAVE 322
                 679**************************************************9************************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.1e-06     0.011       7      36 ..      31      59 ..      24      88 .. 0.80
   2 !   24.6   0.2   8.2e-09   1.5e-05      37      92 ..     176     231 ..     170     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.1e-06
                GGTT.TTEEEEEEEESTTSSHHHHHHHHHH CS
         Arf  7 klklkkkelrilllGLDnaGKtTilkklkl 36
                klkl +k++++lllG   +GK+Tilk+++l
  CDO70956.1 31 KLKL-SKQVKVLLLGSGDSGKSTILKQMRL 59
                5555.9*******************99864 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 8.2e-09
                 SSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT CS
         Arf  37 eelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsa 92 
                 + ++t   Tig +    + ++ ++ + DvGGq++ R+ W + f+++++++f+v  +
  CDO70956.1 176 DIVQTRARTIGITETVFTLRDHEMLMVDVGGQKSERRKWIHCFQDVTSILFLVSLS 231
                 445667889***99999***********************************9765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.2e-06    0.0093      12      47 ..      25      61 ..      25     145 .. 0.86
   2 ?   -3.6   0.0       3.9     7e+03     127     142 ..     248     263 ..     235     288 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.2e-06
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsilealdlFl 47
                +slk+++++ls++   +l G  +sGKS+il+ + l+ 
  CDO70956.1 25 KSLKEAKLKLSKQvKVLLLGSGDSGKSTILKQMRLIH 61
                79***********8899**************988765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.9
      AAA_15 127 kknelsdekisvekkk 142
                 +kn+l  +k++  ++k
  CDO70956.1 248 NKNDLFEKKVQHSDIK 263
                 3333333333222222 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.013        24       1      19 [.      39      57 ..      39      84 .. 0.83
   2 ?    7.9   0.0    0.0017       3.1      29      92 ..     180     235 ..     165     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
                EEEEEESTTSSHHHHHHHH CS
    MMR_HSR1  1 evaivGrpNvGKStLinal 19
                +v+++G   +GKSt+++++
  CDO70956.1 39 KVLLLGSGDSGKSTILKQM 57
                5899***********9987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0017
                 STTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHH CS
    MMR_HSR1  29 kpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkp 92 
                 +   T+ i+e  ++l+++e+ +vD+ G  +  se+++  + f++   +  il++v++s  ++++
  CDO70956.1 180 TRARTIGITETVFTLRDHEMLMVDVGG-QK--SERRKWIHCFQD---VTSILFLVSLS--GYDQ 235
                 55678889899999999**********.43..444455555554...67799999877..2433 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   6.6e-05      0.12       1      31 [.      27      57 ..      27      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.6e-05
                EEEEEEEEETTSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLlkll 31
                lk+ +lkl++  kv ++G+  +GKSt+lk +
  CDO70956.1 27 LKEAKLKLSKQVKVLLLGSGDSGKSTILKQM 57
                68899***********************976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00074       1.3       1      19 [.      39      57 ..      39      82 .. 0.86
   2 ?    1.5   0.0      0.19   3.3e+02      25      85 ..     171     227 ..     160     251 .. 0.58
   3 ?   -2.8   0.0       4.1   7.3e+03      16      46 ..     284     292 ..     274     315 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00074
                EEEEESSTTSSHHHHHHCH CS
         Roc  1 KvvlvGdsgvGKtsllkrf 19
                Kv+l+G + +GK+++lk++
  CDO70956.1 39 KVLLLGSGDSGKSTILKQM 57
                9***************986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
                 C-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTT.TT-HHHHCTSCEEEE CS
         Roc  25 sekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfr.slhplylreaalail 85 
                 +++e+ +++         +i  +e+  ++++ ++ + D++Gq+  r +  +++    ++++l
  CDO70956.1 171 QPTEQDIVQTRA-----RTIGITETVFTLRDHEMLMVDVGGQKSERrKWIHCFQDVTSILFL 227
                 333333333333.....333333344455666677778888865541456666655555555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.1
                 HHCHCT-CCC-EEETTTTEEEEEEECGGSGG CS
         Roc  16 lkrfvedkfsekekstigvdfltkevtkikg 46 
                  krf +                      + +
  CDO70956.1 284 RKRFAR----------------------LAQ 292
                 333332......................211 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.9e-05      0.12      16      39 ..      31      54 ..      24      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                +++++ +  +ll G   sGKST+l
  CDO70956.1 31 KLKLSKQVKVLLLGSGDSGKSTIL 54
                4555544489*************8 PP

>> COOH-NH2_lig  Phage phiEco32-like COOH.NH2 ligase-type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011       0.2     156     229 ..     103     178 ..      82     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
  COOH-NH2_lig 156 pSwlvspavakavlalaklvareyeelekrpleseelqeAfYegdkealrelleelledlkkl..eeyaalakeie 229
                    Swlv++   ++ ++  +    ey+++ k+  e++++q+A+ +g+++al e l+ + +dl +l  ++y+ +++ i 
    CDO70956.1 103 NSWLVQKIQEASDIKDGEPFPIEYRDILKQLWEDPNVQAAYSRGNEAALPENLTYFFSDLDRLfdPSYQPTEQDIV 178
                   688888888888888888888899************************************9975567877777665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0096        17       4      26 ..      38      60 ..      35      98 .. 0.80
   2 ?    3.6   0.5     0.024        43     117     142 ..     235     260 ..     172     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0096
                EEEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyk 26
                +++ ++g  D+GK+T++ ++   
  CDO70956.1 38 VKVLLLGSGDSGKSTILKQMRLI 60
                678899**********9988654 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.024
                 HHHHTTTEEEEEEESCGSTHHHHHHH CS
    GTP_EFTU 117 lalkegvpiivfiNKmDrlkaelkei 142
                 ++l e+   i+f+NK D  +++++++
  CDO70956.1 235 QCLVEDKDAILFLNKNDLFEKKVQHS 260
                 66777788999999999998888765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0034         6       1      17 [.      39      55 ..      39      82 .. 0.93
   2 ?    3.4   0.2     0.023        41      34      87 ..     184     231 ..     168     318 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0034
   Gtr1_RagA  1 kvLLmGksgsGKtsmrs 17
                kvLL+G + sGK+++ +
  CDO70956.1 39 KVLLLGSGDSGKSTILK 55
                8************9965 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
   Gtr1_RagA  34 tidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve 87 
                 ti ++++ + +l+  ++ ++D+gGq++   +       + f++v ++++++  +
  CDO70956.1 184 TIGITETVF-TLRDHEMLMVDVGGQKSERRK-----WIHCFQDVTSILFLVSLS 231
                 555554444.677778889999999986655.....478999999999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2261.17
//
Query:       CDO70957.1  [L=429]
Description: hypothetical protein BN946_scf184829.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2979.41
//
Query:       CDO70958.1  [L=373]
Description: hypothetical protein BN946_scf184829.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2754.65
//
Query:       CDO70959.1  [L=758]
Description: hypothetical protein BN946_scf184829.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-106  357.2   0.0    2.5e-60  204.8   0.0    2.3  2  Cullin           Cullin family
    1.2e-23   82.9   0.7    3.1e-23   81.6   0.7    1.8  1  Cullin_Nedd8     Cullin protein neddylation domain
     0.0062   15.0   0.5      0.013   13.9   0.5    1.4  1  DUF515           Protein of unknown function (DUF515)
  ------ inclusion threshold ------
      0.021   14.8   0.4      0.059   13.4   0.4    1.7  1  MSA-2c           Merozoite surface antigen 2c
       0.18   12.4   1.2         38    4.9   0.4    2.9  3  WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodel


Domain annotation for each model (and alignments):
>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.8   0.0     7e-64   2.5e-60      17     398 ..     116     521 ..      98     522 .. 0.90
   2 !  150.6   0.0   1.8e-47   6.3e-44     483     618 .]     523     657 ..     520     657 .. 0.93

  Alignments for each domain:
  == domain 1  score: 204.8 bits;  conditional E-value: 7e-64
      Cullin  17 sklsfeelYravynlvlskekkqgekLydklkelieehlkellkell.keesdeelLkalkkeWedhktsmkmirdifmyldrvyvk...klpsvydlg 111
                  + ++ ++Yra+   v++    +ge +y+++k  +e+ + +++++l+ +e ++ e+L  +++++  +++++ ++++++ yld++yv+   +lp+v++l+
  CDO70959.1 116 LPATYDRIYRACRAAVTE--AGKGEGIYEAVKMELERCVGTIERTLAsEERKSVEWLVPFTDACAWFEKQVGLLQSLLAYLDTIYVAeqpQLPKVKQLA 212
                 5678999**********4..568*********************99766667777******************************77778999****** PP

      Cullin 112 lelfrdhvf.riklkdrlieallkliekeRegevidrsllksviemlvelgedsedkkvYeeeFekafleateefYraeaeella.ensvaseYlkkae 208
                 +++f d+v+ + ++ + +++++ +++e eR+++   ++ l+s i  lv+    ++++ +Y +  e+ +++ t++fY +e++el +   ++a+++l +++
  CDO70959.1 213 YSMFTDSVIkSARITQAITTGIADWLEWERTNR--ASHPLRSYIPRLVQH---TRAHGLYADIVESTYITLTHTFYIKESDELASaGAMSAKDFLAHVQ 306
                 *********779999***************886..456788888888876...44568**************************9756799******** PP

      Cullin 209 erleeEeervekyldsstkkkllevleeelikkhleelleeelkklledekledLkrlykllsrvdgleeLrkaleeyikeegkaivkdakekekteda 307
                 +r +eE er++++l  ++  ++++++++ l++ +l+ l +  l++l+ +++ ++Lk++ykl+++v+gl+ L  a++ yi++++kaiv+d      +e +
  CDO70959.1 307 ARSKEELERAQEVLLLESVAAVQDTADNALLAGRLQWLAKDALESLMAARNDAQLKKMYKLFAKVGGLSVLSAAFKLYIQKTVKAIVTD------EEHD 399
                 ************9999***********************999*****9889************************************99......7899 PP

      Cullin 308 kkyveklLelkdkfdklvkeafnn.................................dkefekaldeafeefvnknkvnsksaellakYiDelLkkglk 373
                 +++v +lLe+k   dklv++af +                                 ++ef+  l++af   +++++  +k+ae++ak++D+ +++g+k
  CDO70959.1 400 EEMVPRLLEFKAFADKLVTQAFVDetpspaavssstqpapsssktplppapapathpNREFQYGLRDAFHAGFKARR--NKPAEMIAKHLDRAMRRGQK 496
                 ***********************7666666777777777777777777777777777788*************9887..9******************* PP

      Cullin 374 glseeeleekldkvlvlfryiedKD 398
                 g+ +e++ ++ld+vl+l  +++d D
  CDO70959.1 497 GKRDEDFAAELDEVLALYPFTDDND 521
                 *********************9988 PP

  == domain 2  score: 150.6 bits;  conditional E-value: 1.8e-47
      Cullin 483 gaWpterskesevsvklpeeledlieeFeefYkskhsgrkLtWlhslgsaelkatfpkkkyelqvstfqmvvLllFndeeeklsyeeiqeatgl....p 577
                 ++Wp++++k   +++ lp+ +++ + +++efYk+kh+grkL W h+lg+a+lka+f+++++el+vs++q+v+LllFn+e +++sy++i+e+t+l    +
  CDO70959.1 523 SNWPFTARK---NDIDLPPWMQQDLADYTEFYKKKHQGRKLDWDHALGTATLKARFNAGEKELSVSLYQAVILLLFNEE-TTISYADIKEQTRLgaatD 617
                 79**87665...58*********************************************99****************65.8***********8744447 PP

      Cullin 578 ekeLkrtLqsLavakkarvLlkepkskdveptdefsvNaeF 618
                 ++eL+rtLqsLa++k +rvL+k+p+ kdv+ptd+f +Na+F
  CDO70959.1 618 DAELQRTLQSLACGK-KRVLRKQPSGKDVNPTDVFHFNADF 657
                 89*************.8*******66*************99 PP

>> Cullin_Nedd8  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.7   8.6e-27   3.1e-23       1      63 []     688     750 ..     688     750 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 8.6e-27
  Cullin_Nedd8   1 dRklaiqaaIVRiMKsrktlshneLvsevieqlskrftpsiadikkrIesLiekeYleRdend 63 
                   dRk+a++aaIVR+MK++k+ls+++L + +ie+++k+f p++ +ik+rI+ L+e+eYl+Rde+d
    CDO70959.1 688 DRKHALDAAIVRVMKAKKELSYEQLKTATIEAVKKHFVPEVGMIKQRIQGLVEQEYLRRDEDD 750
                   8************************************************************96 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   3.7e-06     0.013      84     152 ..     659     726 ..     646     736 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.7e-06
      DUF515  84 dpqKlllinKiqaansiEelekidvrtifeqakkeleeeiieleqakkekelkqlKqeainqikaafge 152
                 dp   + in iq+ +  Ee ++    +i   +k++l+  i+++ +akke++ +qlK+ +i+ +k+ f +
  CDO70959.1 659 DPRYQVHINSIQSKETPEESKRT-QSSIEADRKHALDAAIVRVMKAKKELSYEQLKTATIEAVKKHFVP 726
                 5666788999**99999*99999.667778899********************************9977 PP

>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   1.6e-05     0.059     132     193 ..     369     454 ..     339     464 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
      MSA-2c 132 a........................tdiaalkdvteeLl..kelqekkPsrtssaetPaPsdaesaaaqP.PeskpaqaPaPtspsqse 193
                 a                        td     ++   Ll  k   +k  +++   etP+P+   s+++qP P   ++++P P +p+++ 
  CDO70959.1 369 AkvgglsvlsaafklyiqktvkaivTDEEHDEEMVPRLLefKAFADKLVTQAFVDETPSPAAV-SSSTQPaP--SSSKTPLPPAPAPAT 454
                 44444444444444444444444448888888777777623555677777888889****998.77888856..778888886666554 PP

>> WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.012        42      59      99 ..     245     286 ..     235     287 .. 0.85
   2 ?   -3.0   0.0       3.1   1.1e+04      13      48 ..     545     580 ..     542     589 .. 0.66
   3 ?    4.9   0.4      0.01        38      50      97 ..     679     726 ..     663     728 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
  WAC_Acf1_DNA_bd  59 kfpealkkpvlelvqfstrs.rlddLvedvyeelkerffvgE 99 
                      + +++l++ + +lvq+++++    d+ve+ y +l ++f+++E
       CDO70959.1 245 RASHPLRSYIPRLVQHTRAHgLYADIVESTYITLTHTFYIKE 286
                      567899********9987651679***************999 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
  WAC_Acf1_DNA_bd  13 tdyeeylerldlykqkvftceitgksnltyfeAles 48 
                       dy e+ ++ +  ++  +  ++   +    f+A e+
       CDO70959.1 545 ADYTEFYKKKHQGRKLDWDHALGTATLKARFNAGEK 580
                      577777777777777777766555555555555555 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.01
  WAC_Acf1_DNA_bd  50 keaskeleekfpealkkpvlelvqfstrsrlddLvedvyeelkerffv 97 
                      k+ + ++e + ++al ++++++++ +++ + ++L    +e +k++f++
       CDO70959.1 679 KRTQSSIEADRKHALDAAIVRVMKAKKELSYEQLKTATIEAVKKHFVP 726
                      5666778888999*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5378.46
//
Query:       CDO70960.1  [L=863]
Description: hypothetical protein BN946_scf184829.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-44  151.4  15.3    1.8e-41  142.5   2.7    4.7  5  SPO22     Meiosis protein SPO22/ZIP4 like
     0.0019   18.5   4.5      0.075   13.3   0.1    5.0  4  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
        4.8    7.8   7.7        2.2    8.8   0.1    4.1  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.052   3.1e+02       1      19 [.     132     150 ..     132     156 .. 0.86
   2 !  142.5   2.7     3e-45   1.8e-41      50     276 .]     156     376 ..     141     376 .. 0.89
   3 !    4.2   2.2    0.0042        25      84     197 ..     388     489 ..     383     544 .. 0.73
   4 ?   -2.1   0.0      0.35   2.1e+03      86     124 ..     736     777 ..     712     782 .. 0.67
   5 !    8.1   0.0   0.00028       1.7      25      76 ..     796     847 ..     787     860 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.052
       SPO22   1 lAwkegdldlAehmlskak 19 
                 +A +eg+  +A +ml+k+ 
  CDO70960.1 132 AAFREGNDGVADFMLEKIS 150
                 5899*************65 PP

  == domain 2  score: 142.5 bits;  conditional E-value: 3e-45
       SPO22  50 kkyeeavkWLqraldilekqesesksssdlselrlsvlrllarayle..ldqeesyekalkavell......qkeygkkehpsllllklkillkreade 140
                 + + +avkW+qra++i e +e+   +    s+lr s+lr+laray+    +++e++ +a++a+++l      + ++++ e+++l++++++il++r+a+ 
  CDO70960.1 156 NGARDAVKWIQRAFSIVEPLEDVPDTG--DSQLRRSILRTLARAYFLssSQDPENLARAEAALQELidsvdsSVDHTSPEYQQLRWMRVAILKRRKAPR 252
                 6678899***********988888887..9*****************999**********************999************************ PP

       SPO22 141 eeieealeemidsvelseanfklilslikrlaeksaalavrvldylldrklsfersed..vvekllvalfflltqskkeedaiealedilaalehslgk 237
                  +++ea++++id++++se+ ++  l ++  l          +l++ ++     ++s +  ++++ll++l++++++  ++ +a+++++ +l+ l +  + 
  CDO70960.1 253 AALLEAFRSIIDHMQYSENTITDALVTAIHL---------HCLEQAFS----SKNSASlvYLDRLLLSLIYHCSKDADHRQAMQDITAVLDLL-ELKEY 337
                 *********************9977766666.........69999999....35555577***************666666777777777754.67788 PP

       SPO22 238 qlskeaasalhtLLWnkgekhykaknydeAaewyelslh 276
                 +l+  +++a++tLLW+ g++hy+ak++++Aa+w+ +++h
  CDO70960.1 338 ELPRIPTTACLTLLWQFGDRHYHAKRWADAADWFLVGTH 376
                 999********************************9987 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0042
       SPO22  84 lsvlrllarayleldqeesyekalkavellqkeygkkehpsllllklkillkreadeeeieealeemidsvelseanfklilslikrlaeksaalavrv 182
                 +++lr  a +y+   q  ++ +a +a++      +   + ++ + +l i  + +  e+e ++a+ +m+++++++++ + l  +l+++  ++  +l + v
  CDO70960.1 388 AKCLRKAALCYV---QCGEHSQASAAIRRCP---P--TDAATHYVALLIAAH-QGLEDEAVAAVHAMVHATNFNKKMLLLATRLAND--SNMKTLLLSV 475
                 79**********...7999**********98...4..466666666666644.444666678999***8777555554444444444..467899999* PP

       SPO22 183 ldylldrklsferse 197
                 l+ lld  ++ e+ e
  CDO70960.1 476 LEALLDASIQ-EGVE 489
                 **99995454.3333 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.35
       SPO22  86 vlrllarayleldqeesyekalkavell....qkeygkkehps 124
                  lr++++ +l  + +++  +a  +ve++    q+++  + +p 
  CDO70960.1 736 WLRAICTILLSRSAPADRTRAIGYVEQAvgvlQEHHA-ESDPH 777
                 5677777777766666666666666666555364444.55655 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00028
       SPO22  25 lrldpeeaeeLarllyniGksllskkkyeeavkWLqraldilekqeseskss 76 
                 +r + +e++ L  + yn G++ l+ +  +ea +W++ a  i+    +++++s
  CDO70960.1 796 QRYPSDERQWLLATAYNTGIECLHASLLDEAKRWFEAATAICRFVPDGESRS 847
                 566778888899999********999999999******99998777766665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.17     1e+03      39      55 ..     182     198 ..     154     221 .. 0.64
   2 ?   -0.0   0.0      0.19   1.1e+03      45      68 ..     348     371 ..     343     372 .. 0.82
   3 ?    0.7   0.0      0.11   6.4e+02      41      69 ..     384     412 ..     383     414 .. 0.81
   4 !   13.3   0.1   1.3e-05     0.075      33      76 ..     795     838 ..     787     838 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.17
      TPR_12  39 pdhpltattlrnLgrly 55 
                 +d+ l  ++lr+L+r+y
  CDO70960.1 182 GDSQLRRSILRTLARAY 198
                 34445555566666666 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.19
      TPR_12  45 attlrnLgrlyralgryeeAlell 68 
                 +t l   g+ ++ ++r+++A +++
  CDO70960.1 348 LTLLWQFGDRHYHAKRWADAADWF 371
                 678888999999999999999987 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.11
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelle 69 
                 h   a +lr  + +y + g++ +A ++ +
  CDO70960.1 384 HISNAKCLRKAALCYVQCGEHSQASAAIR 412
                 56678999999999999999999987655 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 1.3e-05
      TPR_12  33 arrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++r++ +++ ++++t +n g+ ++ +  ++eA +++e a+ai++
  CDO70960.1 795 WQRYPSDERQWLLATAYNTGIECLHASLLDEAKRWFEAATAICR 838
                 69****************************************96 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.7      0.36   2.1e+03       5      37 ..      97     127 ..      96     133 .. 0.74
   2 ?   -0.8   0.0      0.37   2.2e+03      40      54 ..     208     222 ..     175     238 .. 0.73
   3 ?    8.8   0.1   0.00037       2.2      30      66 ..     393     429 ..     383     431 .. 0.88
   4 ?   -2.5   0.0       1.3   7.6e+03      41      58 ..     579     596 ..     578     601 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.36
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAealla 37 
                 gd a A+  l++a  +++++a ar++ + ++++
  CDO70960.1  97 GDAALAAGVLSSA--AKNGHAQARARAIVLYYS 127
                 7888899999997..666788888866766665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.37
      TPR_19  40 qldeAealLdalpee 54 
                 +l+ Aea+L++l ++
  CDO70960.1 208 NLARAEAALQELIDS 222
                 556666666666554 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00037
      TPR_19  30 lLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                   A ++++ g+  +A a++ + p+ d+ + ++a L+A
  CDO70960.1 393 KAALCYVQCGEHSQASAAIRRCPPTDAATHYVALLIA 429
                 5688************************999999988 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.3
      TPR_19  41 ldeAealLdalpeedpdd 58 
                 +d A++lL+ ++++ + d
  CDO70960.1 579 FDTAKELLKMYMRSPAVD 596
                 678999999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.35s 00:00:01.22 Elapsed: 00:00:00.60
# Mc/sec: 4360.60
//
Query:       CDO70961.1  [L=683]
Description: hypothetical protein BN946_scf184829.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-15   55.5   0.1    2.1e-14   54.2   0.1    1.7  1  Cyclin      Cyclin
    9.9e-10   38.3   0.0    2.1e-09   37.2   0.0    1.5  1  Cyclin_N    Cyclin, N-terminal domain
     0.0064   16.5   0.0      0.087   12.9   0.0    3.0  2  SUIM_assoc  Unstructured region C-term to UIM in Ataxin3


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   3.5e-18   2.1e-14      67     160 ..     215     306 ..     161     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 3.5e-18
                 HHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT- CS
      Cyclin  67 gsylsrlqkfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFd 160
                    ++++ + +++++ v + +l Y++r+     +   + ++ + +R  i+al+ a Kf++D  y+n+ +++v gi l E+n++E +Fl+ +dF 
  CDO70961.1 215 IRFMQKVLETTQVSQSVIVLSLRYIYRLKA--RNPFTTGQAGSEYRVAIAALMLANKFVDDNTYTNKTWSEVSGIELSEVNRMEREFLLGIDFG 306
                 35566777889999**************99..78889999*****************************************************6 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   3.4e-13   2.1e-09      27     126 ..     207     307 ..     185     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3.4e-13
                 -HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC...CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHT CS
    Cyclin_N  27 npemRailidwlvevaekfkltpetlflavnyldRflskksvpkd...klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetL 122
                 + ++ ++ i ++ +v e +++++++++l+++y+ R+ +++ ++        +v++++L+lA K+ ++++ + + +  +++  ++ +e+++mEr++L  +
  CDO70961.1 207 QFSVSPTFIRFMQKVLETTQVSQSVIVLSLRYIYRLKARNPFTTGqagSEYRVAIAALMLANKFVDDNTYTNKTWSEVSG--IELSEVNRMEREFLLGI 303
                 456667899*******************************99998677889**************************977..999***********999 PP

                 TT-- CS
    Cyclin_N 123 nfdl 126
                 +f l
  CDO70961.1 304 DFGL 307
                 9876 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.84     5e+03      40      58 ..     407     425 ..     393     429 .. 0.79
   2 !   12.9   0.0   1.5e-05     0.087      12      49 ..     538     648 ..     535     652 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
  SUIM_assoc  40 qqdppgqlshprekpttSs 58 
                  q+pp  ++ p e p+ S 
  CDO70961.1 407 TQHPPYASPAPTEFPAGSK 425
                 5789999999999999886 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.5e-05
  SUIM_assoc  12 tqltsEeLrkrreaYFEK.........................................................................qeqqqqqq 37 
                 + l sEe r+ r a                                                                              +  qqqq
  CDO70961.1 538 SPLESEEERRSRKARLRYhqapvpqpvayhyqpsmpmvvqsastspyevhshvpapqlvlppfsevsqawltgndmpraetaqlppihveqLQDFQQQQ 636
                 567777777777773333556777777777777788888888888888888888888888888888888888888888888888887777534446666 PP

  SUIM_assoc  38 qqqqdppgqlsh 49 
                 qqqq++  q s 
  CDO70961.1 637 QQQQHRHSQASV 648
                 666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4608.55
//
Query:       CDO70962.1  [L=343]
Description: hypothetical protein BN946_scf184829.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-115  384.3  20.8   4.1e-115  384.1  20.8    1.0  1  Chs7      Chitin synthase export chaperone


Domain annotation for each model (and alignments):
>> Chs7  Chitin synthase export chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.1  20.8  2.3e-119  4.1e-115       1     286 [.       4     281 ..       4     282 .. 0.99

  Alignments for each domain:
  == domain 1  score: 384.1 bits;  conditional E-value: 2.3e-119
        Chs7   1 qfgdFdsiCrktalplCnllksskseteakegiepeCyargielantiifnlgsilihivalivtlililrvrskktAvGRkEillflllyllleilel 99 
                 +fg+Fd+iC+++al++C+l++s+       +giep+Cy+r++e+++t+if+++++++h+va+++t i+i+++rsk+tAvGRkEil+f++ly+++e+l++
  CDO70962.1   4 KFGSFDEICQTAALVICPLVGST-------QGIEPSCYSRNVEISGTLIFQPSTCFVHVVAIFMTGIMIFHIRSKYTAVGRKEILMFFYLYAIIELLAF 95 
                 69********************9.......9******************************************************************** PP

        Chs7 100 vvdggviplsskvypyfvavqiglisatlwiLllnglvgfqlleDGtplSllllrlsslvlfivtflialdtfkswtaelsstktiaLfvllyllnlvl 198
                 ++d+g+ip+++ +yp+f+av++gl++  +++Ll+ng+vgfq++eDGtplSl++lr++++v+f v+ ++a++tfk++ a+++  k i+L+++++l++l++
  CDO70962.1  96 FLDSGIIPTANVSYPWFAAVYTGLVAGAYTCLLINGFVGFQFAEDGTPLSLWFLRIATFVTFGVSLFVAIATFKKI-AGFDYAKPIGLWIIYILWPLIC 193
                 ****************************************************************************.********************** PP

        Chs7 199 lvvyvvlqlilvlrvLeerwplgalllgvllfvigqvllyvlskkiCegvkhyidGlffetlcnllavmmvykfWdsiTeddlefsvg 286
                  vvy+v+qlilv+r+Le+rwp+g++++g+++f+++qv+l+++s++iC+++khyidGlff tlc+ll+vmmvyk+WdsiT++dlefsvg
  CDO70962.1 194 TVVYIVSQLILVFRTLEDRWPIGDIVFGTAFFTVAQVILFAFSNTICDAIKHYIDGLFFFTLCMLLSVMMVYKYWDSITREDLEFSVG 281
                 ***************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2472.45
//
Query:       CDO70963.1  [L=616]
Description: hypothetical protein BN946_scf184829.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-46  158.6   0.0    3.5e-46  158.3   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   1.9e-50   3.5e-46       2     383 .]     197     549 ..     196     549 .. 0.90

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 1.9e-50
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS..B-HHHHHHHHHHHHHHHHHCHTCCH CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwgg.elthaGrkqaeelGrqfrqrYplgLl 99 
                 +++++++ RHG+R+P+q     +  p+ +s  + +    +    +  ++++f++          +++ k+g+  lt++Gr+q+++lG  +r +Y   Ll
  CDO70963.1 197 VTGLHLLHRHGARYPTQWAS--YGGPANFSARLHE----AADGWNASGQLEFMN----------NWTYKLGEeILTPFGRQQLYDLGVSMRMKYG-FLL 278
                 6899**************95..6666666665422....334567889999997..........7888888866********************9.888 PP

                 TTSS--.TTEE.EEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCC CS
  His_Phos_2 100 rlhlty.kdlk.irassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylk 196
                 ++  t+ ++l  +r+ s++R++aSA +fa G++g                 ++ ++++++++    + +++++ +++cp+ ++   ++ r    vk+++
  CDO70963.1 279 KN-FTEsNTLPvFRTESQDRMLASALNFALGFFGYPF-------------EGQYQQSITIED---DGYNNTLAPYKTCPNARD-RTKSDRAIPYVKQWA 359
                 88.5555665516799*****************7766.............889999999999...99999999999*******.8999999999***** PP

                 CCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHH CS
  His_Phos_2 197 edmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllk 295
                 +++ + +  rl  +++g+ +l+ ++++++ ++c+ye+ + ++s++c+l++e  +++  ++y  d   +y+          +g+++++++G++++++ll+
  CDO70963.1 360 DIYLKDALARLRPQLHGY-ELTIEDVYTLQQMCAYETVAIGYSRFCELFTE--EEWKGFNYAMDIYFWYDS--------AFGSPVARVQGIGYVQELLA 447
                 *****************9.********************************..******************........******************** PP

                 HHCTSSSEECCS..........CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS.....TTT..HCCCS-CT-EEEEEEEEETCTTTEEEEE CS
  His_Phos_2 296 kilndlqrtree..........atperhvrlrlyfthdshiysllnaLglpeelagedslaa....ldrlsaspelpymsqivfelyedssekkfyvrl 380
                 ++++ +   +++           t++  ++l+++ th+  + ++ +aL+l + + +    a      + +++s+  p+++++ f l +++s  +  +r+
  CDO70963.1 448 RLTHTPIPVHNSstnatlddnpVTFPLGQSLYVDATHEVVVLHVITALNLTNFAVDGPLPADhipeHRAFKSSHLAPFATNMQFQLLSCESHPDPQIRI 546
                 ******99998899**********************************99998887744444779999*********************9998999**9 PP

                 EEC CS
  His_Phos_2 381 lls 383
                 +++
  CDO70963.1 547 IIN 549
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 4131.60
//
Query:       CDO70964.1  [L=476]
Description: hypothetical protein BN946_scf184829.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-85  285.9   0.0    4.4e-85  285.3   0.0    1.2  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.3   0.0   2.4e-89   4.4e-85       4     312 ..       5     331 ..       2     333 .. 0.94

  Alignments for each domain:
  == domain 1  score: 285.3 bits;  conditional E-value: 2.4e-89
                   EEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S........SEEEEGGGGHHHHHHHHHHHHHTT CS
  tRNA-synt_1c   4 tRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwd........ekptyqsdrfdelkkyaeeLikkG 92 
                    RfaP+PtG LH+G+ ++al+nyl+Ak++ Gk ilRieDTd++r +++a+e i ++l w g+++d        ++p+ qs+r+d +++ya++L+++G
    CDO70964.1   5 LRFAPSPTGALHLGGLRTALYNYLYAKKTSGKWILRIEDTDRTRAVPGAVEGIQDALGWAGLEYDygpgkpgpHGPYFQSERLDLYHSYANKLLESG 101
                   5************************************************************************************************ PP

                   SEEEE-STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEE...SSBTTSSGGGSSTEEEEEEESGGGS.BTTTBTSTSEEE CS
  tRNA-synt_1c  93 kAYvcectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRl...kideessvefrDlvrgriklepqei.hdlvivksdiyP 185
                   +AY+c+c++++l + re+  + g  +++ yd+ +l+l+e+e+  + ++gek +vRl   +++++     +Dlv  + k ++ ++  d v+ ksd yP
    CDO70964.1 102 HAYRCFCSADKLAATREKLARTG--SNSTYDKTCLHLTEDEVARKVRAGEKSIVRLndgRLPMRP--PGHDLVFKNLKDAHASLpTDPVLLKSDSYP 194
                   ******************99999..799***************************9333355654..589********9999987899********* PP

                   -HHHHHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-H... CS
  tRNA-synt_1c 186 tYdfavvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtp... 279
                   tY++a v+dD+ ++ithv+r+ee+l + p ++ l+  l+l++p+f+h++++ln +++k+SKRk+++   + ++k+ +  +  +ln l++ Gw +   
    CDO70964.1 195 TYHLASVVDDHEMGITHVVRGEEWLPSLPLHLDLYACLNLPTPQFAHLPILLNPDGTKMSKRKGDVH--VLDYKNRGWEPSSVLNWLALAGWGVqda 289
                   *****************************************************************99..899**********************999 PP

                   .........HHHHHHHHHHCCCSSS.EEEEHHHHHHHHHHHH CS
  tRNA-synt_1c 280 .........ekerelftreeliksfdlnresksleafdrkkL 312
                             +   l+t++e+i++fd ++++++ ++ d  kL
    CDO70964.1 290 sssssgkqaPNSTTLMTMDEMIRNFDFSVLTHRRSVLDPVKL 331
                   999988877778889999999999999999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3543.52
//
Query:       CDO70965.1  [L=1741]
Description: hypothetical protein BN946_scf184829.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-17   62.3  16.4    3.6e-17   62.3  16.4    2.5  2  zf-UBR    Putative zinc finger in N-recognin (UBR box)
    2.7e-10   39.9   0.0    6.7e-10   38.6   0.0    1.7  1  ClpS      ATP-dependent Clp protease adaptor protein ClpS
  ------ inclusion threshold ------
       0.11   13.0   0.3       0.83   10.2   0.0    2.6  2  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3  16.4   6.1e-21   3.6e-17       2      70 .]      23      91 ..      22      91 .. 0.92
   2 ?   -8.3  11.5         3   1.8e+04      12      47 ..    1607    1643 ..    1599    1654 .. 0.68

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6.1e-21
      zf-UBR  2 CtkvfkkgevvyrCltCsldetsviCeeCfkaskHeghelvelstkrng.gvCdCGdeeawkeegfCkkh 70
                C+++fkkge+++rC++C+ld+++v+C++Cf+a++H++h++ ++++++++ g+CdCGd eaw+++ +C  h
  CDO70965.1 23 CGHIFKKGESCFRCKDCALDDSCVLCSSCFEATDHADHNV-SFFIAQQSgGCCDCGDVEAWRHPINCPYH 91
                ****************************************.666666666************9889*877 PP

  == domain 2  score: -8.3 bits;  conditional E-value: 3
      zf-UBR   12 vyrCltCslde.tsviCeeCfkaskHeghelvelstk 47  
                  + +C  C++ +  ++iC  C  +   ++h ++ +++ 
  CDO70965.1 1607 TMTCARCKTVPlDAAICLFCGTTVCFQSHCCMDVENG 1643
                  5678888777435799999988876788877555444 PP

>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.1e-13   6.7e-10       6      53 ..     192     239 ..     188     255 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.1e-13
                 EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEE CS
        ClpS   6 YkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgv 53 
                 + +v++NDd ++++ V+e L ++ + s+eeA ei+  ++ +Gr v+  
  CDO70965.1 192 FALVVWNDDKHSFDEVIELLHSITNRSREEAAEIANRIDDQGREVIEL 239
                 789*****************************************9976 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.65   3.9e+03      82      82 ..     236     236 ..     157     290 .. 0.62
   2 ?   10.2   0.0   0.00014      0.83      12     101 ..     953    1051 ..     950    1059 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.65
      DinB_2  82 l 82 
                 +
  CDO70965.1 236 V 236
                 2 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00014
      DinB_2   12 lledlteeelnrqpspgkwsiawllaHlgnveelllerlr......geeap...rpgldpltp.psaaealaylaevrarllallealtdad..ldr 96  
                  l++ l++ e++ ++ + ++ ++w+l+H++  ++  ++r r              + + ++++     + + + ++e+++ +   +e+++d+d  l++
  CDO70965.1  953 LVDILSTFEYHEKYLTYRTRVRWILDHIAEHQQDEVARRRsspeskA---QiedPNEAKKRAAkARQEAIMRKMKEQQEKVAFNFEGIDDEDddLAD 1046
                  667788889999999***************88854444442365441...12223333333331444455577888888887777777664333666 PP

      DinB_2   97 pltap 101 
                  +l ap
  CDO70965.1 1047 TLEAP 1051
                  66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.45
# Mc/sec: 11650.48
//
Query:       CDO70966.1  [L=179]
Description: hypothetical protein BN946_scf184829.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-26   92.2   0.0    4.1e-26   91.4   0.0    1.4  1  TRAPP     Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   2.3e-30   4.1e-26       1      96 [.      23     172 ..      23     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 2.3e-30
       TRAPP   1 fafllgelvsylqrdskdveeve......................................................krLekmGyrvGlrllelllare 45 
                 ++++++e+v+ l  +s  ++++                                                       +rLe++G++vG +++e +l+++
  CDO70966.1  23 MDYFVIEMVNALRASSAVATARTkkveqemidaglmpapappppalkkeqmresmgsnlslsslsktgregdeeelrARLEAIGMHVGANMAE-RLCHD 120
                 57788888888877775554444677788899999999999999999999999999999999999999999999999****************.***** PP

       TRAPP  46 rpretdilevlkfickdlWkllfgkqidnlktnhrgeyvltdnef.pltrfv 96 
                 r  +td+l+++kfickdlW+++++kq+dnl+tnhrg+yvl+dn+f pltr+ 
  CDO70966.1 121 RGLFTDTLDAIKFICKDLWNACWDKQVDNLRTNHRGVYVLQDNAFkPLTRIS 172
                 *************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1322.93
//
Query:       CDO70967.1  [L=510]
Description: hypothetical protein BN946_scf184829.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-06   26.6   0.0      0.073   13.4   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0058   17.5   6.0         20    6.2   0.0    5.5  5  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.2   1.8e+03      36      68 ..     240     274 ..     222     292 .. 0.68
   2 !   13.4   0.0   8.2e-06     0.073      32      90 ..     332     395 ..     323     397 .. 0.81
   3 !    9.0   0.0   0.00019       1.7      37      87 ..     447     501 ..     432     505 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.2
  ANAPC4_WD40  36 kedsevrsLaWkpdgk..lLavaysdgevrlldae 68 
                  k ++e++ ++++p+ +  +L  a sd ++rl+ + 
   CDO70967.1 240 KAEGEIKVVQFHPSPQvpVLFTASSDRRLRLFTVD 274
                  44556666666555442278889999999988765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.2e-06
  ANAPC4_WD40  32 l.....eedkedsevrsLaWkpdgklLavaysdgevrlldaesg..kvvhslsvksekavtclgWg 90 
                  +     +++++d++ +  a+   g++Lava   g+v+l+d  +g  +vv s++++s    ++l W+
   CDO70967.1 332 TtfansTQAGQDGSMEICAFDSTGSVLAVAGRRGHVHLVDWRTGggQVVGSVKMNSG--AKSLWWS 395
                  444445678889999999**********************99853388988888888..6777775 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00019
  ANAPC4_WD40  37 edsevrsLaWkpdgklLava..ysdgevrlldaesgkvvhslsvksek..avtcl 87 
                     +++sL++++d +lLa+a  +++ ++rl++  s +  ++++++s+   +vt++
   CDO70967.1 447 LTTSITSLKFNHDSQLLAMAsnVKKDQMRLIHLPSLTAFSNWPTSSTPlgHVTSV 501
                  5679*************9983357889****999999999998887755555555 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.032   2.9e+02      16      37 ..     248     271 ..     236     272 .. 0.74
   2 ?    0.2   0.1      0.18   1.6e+03       5      25 ..     271     303 ..     269     307 .. 0.60
   3 ?    0.6   0.9      0.13   1.2e+03      25      38 .]     399     412 ..     338     412 .. 0.61
   4 !    6.2   0.0    0.0023        20       9      26 ..     445     464 ..     439     474 .. 0.75
   5 !    4.4   0.1    0.0086        77       7      23 ..     494     508 ..     488     510 .] 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.032
                 EEEETTSSE..EEEEETTSEEEEE CS
        WD40  16 lafspdgaw..lasGsdDgtvriW 37 
                 ++f+p+ +   l+++s D+ +r++
  CDO70967.1 248 VQFHPSPQVpvLFTASSDRRLRLF 271
                 45677777776767766*****96 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.18
                 EEEESS.SS...........EEEEEEETTSSEE CS
        WD40   5 rtltGH.ss...........vtslafspdgawl 25 
                  t +GH ++           vt   f+p+g+ +
  CDO70967.1 271 FTVDGHsNPhlqtlhvpslpVTNAMFHPSGTSI 303
                 567789666755555444555444499999875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.13
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 l++ +dD  v++Wd
  CDO70967.1 399 LLTLGDDAEVYVWD 412
                 22323377777776 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0023
                 SS..SSEEEEEEETTSSEEE CS
        WD40   9 GH..ssvtslafspdgawla 26 
                 G   +s+tsl+f++d+++la
  CDO70967.1 445 GNltTSITSLKFNHDSQLLA 464
                 454446************97 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.0086
                 EESSSSEEEEEEETTSS CS
        WD40   7 ltGHssvtslafspdga 23 
                   GH  vts++fs  ++
  CDO70967.1 494 PLGH--VTSVDFSAGSD 508
                 4599..****6666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3663.26
//
Query:       CDO70968.1  [L=342]
Description: hypothetical protein BN946_scf184829.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-05   24.0   0.0    0.00041   20.3   0.0    2.2  1  Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthe


Domain annotation for each model (and alignments):
>> Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.3e-08   0.00041      63     190 ..       3     127 ..       1     137 [. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-08
  Glyco_transf_25  63 LtlgelGCylSHyllWekcveln...........leyiiIlEDDvilseefkealedllkeik.eleflrlgelkktrfeekdkellkletfle 144
                      Lt g l+C  SH+l   ++ e +           + + ++lEDDv +++++ e+l  + +    + ++++lg++ +           +   ++ 
       CDO70968.1   3 LTPGKLACWYSHLLAIRRIAEYEtgdasvppaadMRAFMVLEDDVDMEQRLAEILPRVWSALPsNWDIVYLGHCWS--------DESRYPSIIR 88 
                      899******************999999999999999**********************999885556666655544........2233444455 PP

  Glyco_transf_25 145 dsksfkkkkiaeyekrafyllssevagtaGYlltpkaAkkllkalk 190
                      d  s   +++           s    +t++Y l+p++A++ll +l 
       CDO70968.1  89 DVSSGDAQPV-------TVHPSFAPLCTHAYALNPRGARRLLRYLT 127
                      5555556666.......34444567789999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2477.20
//
Query:       CDO70969.1  [L=161]
Description: hypothetical protein BN946_scf184829.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.6   2.1     0.0032   17.5   2.1    1.6  1  zf-CCHC    Zinc knuckle
  ------ inclusion threshold ------
      0.041   13.6   3.4      0.085   12.6   3.4    1.5  1  zf-CCHC_5  GAG-polyprotein viral zinc-finger


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.1   3.6e-07    0.0032       2      18 .]      72      88 ..      71      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.6e-07
                CTSSSSSSSSTTTTSTS CS
     zf-CCHC  2 kCynCGepGHiardCpk 18
                 C++C+++ H+ar+Cp+
  CDO70969.1 72 RCFHCQQIRHLARQCPN 88
                7***************6 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.4   9.5e-06     0.085       2      21 ..      70      89 ..      69      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-06
                --B-TTT-SSBS-TTT---S CS
   zf-CCHC_5  2 pglCpRCkkgkHwardChsk 21
                +g+C  C + +H ar+C  k
  CDO70969.1 70 EGRCFHCQQIRHLARQCPNK 89
                8****************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1258.81
//
Query:       CDO70970.1  [L=222]
Description: unnamed protein product, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-06   27.3   0.0    6.4e-06   26.7   0.0    1.3  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
      0.011   15.1   0.2      0.014   14.8   0.2    1.1  1  Caps_synth      Capsular polysaccharide synthesis protein


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   7.1e-10   6.4e-06      60      95 ..      32      66 ..       7      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 7.1e-10
  Gly_transf_sug 60 lsDllRlaiLykyGGiYlDtDvivlkslrnsigaee 95
                      Dl+Rl+++++yGG+ +D+D  ++++l  +++ +e
      CDO70970.1 32 DGDLVRLLVIWAYGGVWVDMDSLLTRDL-APLLEHE 66
                    46************************99.7777655 PP

>> Caps_synth  Capsular polysaccharide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   1.6e-06     0.014     115     149 ..      34      67 ..      27      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-06
  Caps_synth 115 DllRleLLkkyGGvWiDaTifltkklpsellkkdf 149
                 Dl+Rl ++  yGGvW+D   +lt++l   l + +f
  CDO70970.1  34 DLVRLLVIWAYGGVWVDMDSLLTRDLAPLL-EHEF 67 
                 9****************9999998887654.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       171  (0.00953762); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1725.72
//
Query:       CDO70971.1  [L=2127]
Description: hypothetical protein BN946_scf184830.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.28s 00:00:01.33 Elapsed: 00:00:00.43
# Mc/sec: 14780.23
//
Query:       CDO70972.1  [L=346]
Description: hypothetical protein BN946_scf184830.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-15   56.5   0.0    9.5e-13   48.4   0.0    2.3  2  DFP       DNA / pantothenate metabolism flavoprotein
  ------ inclusion threshold ------
       0.15   12.4   0.0        3.6    7.9   0.0    2.4  2  HAD       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0012        11       4      28 ..      48      74 ..      45      99 .. 0.82
   2 !   48.4   0.0   1.1e-16   9.5e-13      62     176 ..     155     272 ..     127     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
                -EEEEEES-EEEEC..CTTEEEEE--- CS
         DFP  4 kkvlvtaGpTrEai..DpVRfisNrSS 28
                k vlvt+G+T  ++    VRf+ N S 
  CDO70972.1 48 KVVLVTSGGTTVPLelNVVRFLDNFSA 74
                6799*******9862268*****9984 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 1.1e-16
                 EEEE--SHHHHHHHHHHHH...TT-SEEEE---S--EEE..S-------------..----EEE---HHHHHHHC-S.S-EEEEEEE-SS..-HHHHHH CS
         DFP  62 evvkvesaeemleaveeal...keadivimaAAvaDyrp..keaaeeKikkeeeeeeltleleknpdilaelaekkkkkqllvGFaaete..ellenar 153
                 ++v v++   +l+av +++    ++ +   aAAv+D+    ++ +e+Ki+   ++ +l++e+ + p+il++l ++ +++ ++v F++et+   l+ +ar
  CDO70972.1 155 NFVTVNDYLWLLRAVSQEMsllGRNCLYYLAAAVSDFFLprQRMSEHKIQS--GKGSLHIEMDQVPKILKSLVQEWTREGFIVSFKLETDpdLLIPKAR 251
                 566677777777777776644456677889******987556678888885..6668***************98888888*********555899**** PP

                 HHHHHTT-SEEEEEEGGGTTGGG CS
         DFP 154 eklerkgldlivaNdvskeeagf 176
                 + l+r g ++++ Nd++++  +f
  CDO70972.1 252 QALARYGHQVVIGNDLHRR--KF 272
                 ****************986..44 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00041       3.6      89     130 ..      34      80 ..       4     103 .. 0.79
   2 ?    2.0   0.0     0.027   2.4e+02     115     133 ..     250     268 ..     214     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00041
         HAD  89 galellaahraaGdrvvvvSgg.....lrplvepllaelgadevlat 130
                  ++e++++++ +G +vv+v++g     l+ +v ++l+++ a+++l  
  CDO70972.1  34 RVKEFVQRQLGEGRKVVLVTSGgttvpLELNVVRFLDNFSAEYFLKA 80 
                 789****999*********9998999999999999999888877766 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.027
         HAD 115 vepllaelgadevlatele 133
                 ++  la++g++ v++++l+
  CDO70972.1 250 ARQALARYGHQVVIGNDLH 268
                 4555566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2446.65
//
Query:       CDO70973.1  [L=291]
Description: hypothetical protein BN946_scf184830.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2166  (0.12081); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 1828.44
//
Query:       CDO70974.1  [L=395]
Description: hypothetical protein BN946_scf184830.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-21   75.1   0.0      1e-19   71.2   0.0    2.0  1  Abhydrolase_1   alpha/beta hydrolase fold
    4.1e-16   60.3  13.1      3e-15   57.4  13.1    2.0  1  Abhydrolase_6   Alpha/beta hydrolase family
    4.7e-09   35.9   0.0    1.5e-08   34.3   0.0    1.7  2  Hydrolase_4     Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.025   13.6   0.0      0.035   13.1   0.0    1.1  1  Chlorophyllase  Chlorophyllase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   2.3e-23     1e-19       1     253 [.      40     378 ..      40     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.3e-23
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.............CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin............ddygtasvaddldrildalgddklt.lvGhSmG 83 
                    p++++lhG+p+ +++w++  ++  La+ g++v+++D+rG g++ p+  + +              y t+++  d+ +++ alg ++++ l+Gh+ G
     CDO70974.1  40 PLIILLHGFPEIAYSWRK--VILPLAHLGYHVVAPDQRGLGRTVPSDPTAPgalrpltyeddvAPYKTINLVHDVVALVSALGHRSVAcLIGHDAG 133
                    789***************..***********************99999999*********999899****************************** PP

                    HHHHHHHHHHHGGGEEEEEEESE...CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHH CS
  Abhydrolase_1  84 GmialayaaeyperVkalvllga...idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsd 176
                     +ia ++a   p+  +++v++++    +p+  ++ a  +   ++p  f  +  ++a  +++p   +++  + ++ +++d  + p+  + f ++++ 
     CDO70974.1 134 ATIAGYAAVIRPDIFNKVVFISTpfsGPPSLPFDIAHSFPSSTPPAIFPATLVEEALATLNPPRKHYMVYYSTPEANEDVWHAPQGLQAFFRGYFH 229
                    ***********************7755556666666677777777788888888888888888888888888887777777775555555555555 PP

                    HCHHHHHHHHHHHHHHHHCCHHHHHHHHHC.................................................................. CS
  Abhydrolase_1 177 nasslatgalksieqwpttdsaklllrlre.................................................................. 206
                    + s + +g + +  ++++t  a+    + +                                                                  
     CDO70974.1 230 IKSADWAGNDPHPVEASATGLASIPHYYIMprkatmadvaaadvpspeevsrnswlpeaelavyareygktgfqgglnryrcftspslseeltlfa 325
                    555555555555555555555444433333555555555555555555555555555555566666666666666888888899999999999999 PP

                    THHHHSEEEEEEETTCSSSCH..HHHHHHHHC.HTS...EEEEEEETCSSSHH CS
  Abhydrolase_1 207 lknvlaptlvisgtsDplvpp..kaledlaql.lpk...krlvvisdagHlaf 253
                    +k++  p++++sg++D+ v    +ale+++   + +   + ++ +s+agH+ +
     CDO70974.1 326 GKKIEMPAMYVSGQKDWGVYQnpGALEKMQTEaCTRmgkEDVILLSGAGHWGQ 378
                    88889999999999999773325777777766855556689999999999987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4  13.1   6.8e-19     3e-15       1     217 [.      42     385 ..      42     387 .. 0.57

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 6.8e-19
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS.........--HHH..........CHHHHHHHCCTT..TTSE.EEEEETCHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdppp.........ldled..........ladlaalldelaagggpv.vlvGHSlGG 76 
                    ++llHG++  a+sW+   +++l++ g+hv+apD +G Gr+ p++         l++ed          ++d++al+ +l+  ++ v +l+GH+ G+
     CDO70974.1  42 IILLHGFPEIAYSWR-KVILPLAHLGYHVVAPDQRGLGRTVPSDptapgalrpLTYEDdvapyktinlVHDVVALVSALG--HRSVaCLIGHDAGA 134
                    79****9999****4.4778999999************664444344455555555555444444444588899999994..7777********** PP

                    HHHHHHHHCC........EEEEES-......................----TTT.......S----TTHHHHHH.TT-C.CCCHCCH...S-HSCC CS
  Abhydrolase_6  77 alalaaapla......lvvgvlldp....................pptalpagl.......laaalelllalla.llrl.lawlsre...plprlf 134
                    ++a     +a      ++  v++++                    pp ++pa+l       l+++++++  +++ +++  + w++     ++ r++
     CDO70974.1 135 TIAGY---AAvirpdiFNKVVFISTpfsgppslpfdiahsfpsstPPAIFPATLveealatLNPPRKHYMVYYStPEANeDVWHAPQglqAFFRGY 227
                    ***99...6666687543338888866665555555554444443333333333444444433333333322222222257777444444333355 PP

                    CCHHHCCCCHCHCCCGHH....................................................HHCCHHCHTTCCHHTT-TTGC..... CS
  Abhydrolase_6 135 ladedadaawrarlarla....................................................allaglgllpaaawadlpvpl..... 173
                    ++  +  a+w+ ++ ++                                                                         +     
     CDO70974.1 228 FHIKS--ADWAGNDPHPVeasatglasiphyyimprkatmadvaaadvpspeevsrnswlpeaelavyarE-------------------Ygktgf 302
                    55444..5566665555555555556666666666666666666655555555555555555544444441...................133333 PP

                    ...............................EEECTT-C........HHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 174 ...............................lvlggeDp........lvprllerlla..qagarlpvvlpgaGHlphleepdev 217
                                                   + + g+ +        ++   ++  ++  + ++++ ++l gaGH+ ++e+p+ +
     CDO70974.1 303 qgglnryrcftspslseeltlfagkkiempaMYVSGQKDwgvyqnpgALEK-MQTEACtrMGKEDV-ILLSGAGHWGQQEQPEGL 385
                    333333344444446667665555556655533343333477655542223.44444459999999.**************9865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   3.3e-12   1.5e-08       3     117 ..      38     164 ..      36     214 .. 0.82
   2 ?   -1.5   0.0      0.28   1.2e+03     188     210 ..     327     349 ..     322     376 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 3.3e-12
  Hydrolase_4   3 pkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse...............gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSm 85 
                   k +++l+HG+ e +    +++  La+ G++v+a D+rG Gr+                   +   ++  +v D+ a+v+++    +++   l+Gh  
   CDO70974.1  38 TKPLIILLHGFPEIAYSWRKVILPLAHLGYHVVAPDQRGLGRTVpsdptapgalrpltyEDDVAPYKTINLVHDVVALVSALG---HRSVACLIGHDA 132
                  6789***********************************************99998844444444455567999999987777...555689****** PP

  Hydrolase_4  86 GGliallyllrypdkvaglilsaPalkikakl 117
                  G++ia  ++  +pd +++++++++ ++ +++l
   CDO70974.1 133 GATIAGYAAVIRPDIFNKVVFISTPFSGPPSL 164
                  **************999******999998876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.28
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeas 210
                  +ki++P + ++G++D+ v +++ 
   CDO70974.1 327 KKIEMPAMYVSGQKDWGVYQNPG 349
                  68999**********97765555 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.8e-06     0.035      45     134 ..      38     137 ..      16     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.8e-06
  Chlorophyllase  45 typvvlflhGtllsnkfyskllnhiashGfivvaPq...lykllp.....PsaqdeidsaaevieWlseglkavlptsvea..nlsklalvGhsr 129
                     t p++++lhG+    +++ k++  +a  G+ vvaP    l + +p     P+a   +    +v+ + + +l + +   v a    s  +l+Gh  
      CDO70974.1  38 TKPLIILLHGFPEIAYSWRKVILPLAHLGYHVVAPDqrgLGRTVPsdptaPGALRPLTYEDDVAPYKTINLVHDVVALVSAlgHRSVACLIGHDA 132
                     5799*******************************745577888888788888889999999999999999988886666521566778899988 PP

  Chlorophyllase 130 GGkta 134
                     G   a
      CDO70974.1 133 GATIA 137
                     87654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2668.99
//
Query:       CDO70975.1  [L=839]
Description: hypothetical protein BN946_scf184830.g7, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-24   85.3   0.0    5.6e-24   84.3   0.0    1.6  1  XPG_I            XPG I-region
    5.2e-07   30.1   0.0    9.3e-07   29.3   0.0    1.4  1  XPG_N            XPG N-terminal domain
    7.9e-05   23.2   0.0    0.00017   22.1   0.0    1.5  1  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
    0.00051   19.6   2.0     0.0013   18.3   0.0    2.1  2  XPG_I_2          XPG domain containing
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.029   14.2   0.0    1.4  1  TPR_1            Tetratricopeptide repeat
      0.024   14.7   0.0      0.062   13.4   0.0    1.6  1  TPR_2            Tetratricopeptide repeat
        0.1   12.5   0.1       0.32   10.9   0.1    1.9  1  TPR_10           Tetratricopeptide repeat
       0.18   12.1   0.0       0.37   11.1   0.0    1.5  1  TPR_8            Tetratricopeptide repeat
          1    9.2   5.1        2.3    8.1   5.1    1.6  1  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   2.8e-27   5.6e-24       3      94 .]     104     196 ..     102     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 2.8e-27
                 HT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT..ECECTT...EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   3 mgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnls.kkkskkk.kekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                  g+py+vAp+EA+Aq+ayL++ glvd++i+eDsDll+FG+++vl +l  +++  ++ ++++  +v + +    l+ +g+t+ q++ +ail+gcD
  CDO70975.1 104 EGVPYIVAPYEADAQLAYLERIGLVDGIITEDSDLLVFGCKTVLYKLDiTSSTVTCiSRDDFASV-ESKSAGGLSLVGWTDTQFRAMAILSGCD 196
                 79*********************************************966666666333333333.333346777799***************9 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.7e-10   9.3e-07      63     100 ..       2      39 ..       1      40 [. 0.94

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.7e-10
                 HHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHHHH CS
       XPG_N  63 srllrlldfgikPifVFdgkapdlkkeelekrserrqe 100
                 +r+  l ++gi+P++VFdg++++ k+++++ r++rr+e
  CDO70975.1   2 HRVRLLRHYGIEPYLVFDGGPLPAKQGTESERKQRREE 39 
                 7889999*****************************98 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   8.6e-08   0.00017      17      60 ..     195     239 ..     184     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 8.6e-08
  5_3_exonuc  17 sDnipGvpgiGektAakLlkeygsleeilenld.elkekklkekL 60 
                  D +p +pgiG ktA +Ll++++++e++l+ l  e k+k  k+ L
  CDO70975.1 195 CDYLPSIPGIGLKTAWTLLRKHKTVETMLNMLRlEGKKKIPKDYL 239
                 5899**************************887543433333334 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.3e-07    0.0013      21      60 ..     106     144 ..      88     205 .. 0.80
   2 ?   -1.0   1.6       0.5     1e+03     197     241 ..     797     836 ..     793     838 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.3e-07
     XPG_I_2  21 ditevvpgEADkfcAvlA.rklgcaVLTsDSDLlvhdlgee 60 
                 ++++v p EAD++ A+l    l + + T+DSDLlv+    +
  CDO70975.1 106 VPYIVAPYEADAQLAYLErIGLVDGIITEDSDLLVFG--CK 144
                 6899**************6699**************4..33 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.5
     XPG_I_2 197 vedhsrrcaWe.egkdiRllAysllnlsskgerketvlEylrkgqr 241
                 ++ +s r+ W+ e++  R   +s+       +r+++ lE +r+gq 
  CDO70975.1 797 EDHDSARARWArEASASRTGTTSV------SSRNRNSLEQFRRGQL 836
                 567788999995444444444444......45679999****9996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-05     0.029       7      30 ..      43      66 ..      41      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  7 lGnayfklgkydeAleyyekALel 30
                ++na+  +gk+ +A eyy k++ +
  CDO70975.1 43 RANALAAQGKHSQAREYYVKCVDV 66
                9*******************9876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.1e-05     0.062       6      32 ..      42      68 ..      38      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
       TPR_2  6 nlGlayyklgdyeeAleafekAleldP 32
                 +++a++++g++ +A+e++ k++   P
  CDO70975.1 42 SRANALAAQGKHSQAREYYVKCVDVTP 68
                58*******************998877 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016      0.32       9      31 ..      44      66 ..      42      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
      TPR_10  9 analrqrgrydeAealleealai 31
                anal ++g++ +A++++ +++++
  CDO70975.1 44 ANALAAQGKHSQAREYYVKCVDV 66
                89******************975 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.37       7      33 ..      43      69 ..      40      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkeyyekaleldpd 33
                 ++++  +g++ +A eyy k+++  p+
  CDO70975.1 43 RANALAAQGKHSQAREYYVKCVDVTPQ 69
                689999****************99886 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.1    0.0011       2.3       4      32 ..     680     710 ..     677     714 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
  Gly-zipper_OmpA   4 AavGAalGAaaGAa..vGaitGsaGtGAaiG 32 
                      A  G+++GAa+ A+   +a  Gs G GA +G
       CDO70975.1 680 ARSGTVTGAASPALarADAQGGSKGPGARVG 710
                      668***********888999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 4974.25
//
Query:       CDO70976.1  [L=511]
Description: hypothetical protein BN946_scf184830.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   22.4   0.8    0.00028   21.2   0.8    1.7  1  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.037   14.9   0.4       0.12   13.3   0.4    1.9  1  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.8   3.1e-08   0.00028       1      23 []     361     385 ..     361     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.1e-08
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 +kCp   C+ksF  +sn krH+rtH
  CDO70976.1 361 FKCPipTCTKSFAVRSNAKRHLRTH 385
                 89**********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   1.3e-05      0.12       1      23 [.     361     385 ..     361     386 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 fkCpi  C+ksF  +++ +rHl+th
  CDO70976.1 361 FKCPIptCTKSFAVRSNAKRHLRTH 385
                 89***********66666******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3410.35
//
Query:       CDO70977.1  [L=174]
Description: hypothetical protein BN946_scf184830.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-27   94.7   2.6    4.1e-27   94.5   2.6    1.1  1  PIG-P     PIG-P
  ------ inclusion threshold ------
      0.033   14.5   8.9      0.077   13.3   8.9    1.6  1  DPM2      Dolichol phosphate-mannose biosynthesis regulatory 


Domain annotation for each model (and alignments):
>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   2.6   4.6e-31   4.1e-27       3      87 ..      43     126 ..      41     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 4.6e-31
       PIG-P   3 eyygFvlyllstlafllyllwallPeevlhalgityypnryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaak 87 
                 e+ygFv + +++l+f+lyllwa+lP+e++ alg+++ypnr+W+l++pay +++vl++y+++++l l + tp +d+++ti+  aa 
  CDO70977.1  43 EFYGFVAWASTYLLFVLYLLWAFLPDEYIVALGVSWYPNREWSLLIPAYGMVTVLLTYFTYFALAL-AGTPAFDDMSTITALAAG 126
                 89****************************************************************.************988874 PP

>> DPM2  Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   8.9   8.6e-06     0.077       6      69 ..      46     108 ..      43     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-06
        DPM2   6 GlllllvalllfvYYtiwvillPfvdedhvlh...kyflpreyairipvillvvlllfvgtFiglvl 69 
                 G++  +   llfv Y +w++l    +++ ++    +++++re+++ ip++ +v++ll+ +t+++l l
  CDO70977.1  46 GFVAWASTYLLFVLYLLWAFL----PDEYIVAlgvSWYPNREWSLLIPAYGMVTVLLTYFTYFALAL 108
                 7888888999********965....44444432339**************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.35s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 973.66
//
Query:       CDO70978.1  [L=199]
Description: hypothetical protein BN946_scf184830.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.042   13.0   0.1      0.055   12.6   0.1    1.1  1  Serine_protease  Gammaproteobacterial serine protease
      0.045   13.6   0.0       0.58   10.0   0.0    2.0  2  5-FTHF_cyc-lig   5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.2e-06     0.055       9      71 ..      21      81 ..      12      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-06
  Serine_protease  9 ktavisfsvsaltsPfkalLtnlqkdgsvlpsaysgGlfralYrGflayalagskrravaVta 71
                      t + +   sal + ++a+L nl+ d+  ++++   G++r + rG ++ +l++++r ++  +a
       CDO70978.1 21 ATSALTKQKSALRNAMRATLANLSSDE--IQAQCTPGFLRQIMRGLGTVSLTSKARPSAVFSA 81
                     566666677899999*********984..444689****************999988776655 PP

>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.025   2.2e+02       1      24 [.      29      52 ..      29      90 .. 0.83
   2 ?   10.0   0.0   6.5e-05      0.58      66     112 ..     147     194 ..     144     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.025
                    HHHHHHHHHHHHHTS-HHHHHHHH CS
  5-FTHF_cyc-lig  1 KqelRkqllaalralseeevaaes 24
                    K++lR+ ++a l +ls +e++a+ 
      CDO70978.1 29 KSALRNAMRATLANLSSDEIQAQC 52
                    899**************9999874 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.5e-05
                     TEEEEEEEE.CSSCTEECEEEEEECCCCCCCCCHCTSSCE--TTECCB CS
  5-FTHF_cyc-lig  66 gkevllPrv.rlesgslkvvrlttlkeedslesgkyglkePeeeeere 112
                     gk +++P++  +e g ++ ++++ +++  sl+sg++g+ ePe+e + +
      CDO70978.1 147 GKTLYVPKMlDKERGIMDFLQIYGEDDLRSLPSGQWGIREPETELRGN 194
                     7889999872456699**************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1294.43
//
Query:       CDO70979.1  [L=285]
Description: hypothetical protein BN946_scf184830.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-07   28.7   0.0    1.1e-06   28.1   0.0    1.2  1  Rad51      Rad51
    1.1e-05   25.0   0.0    1.7e-05   24.4   0.0    1.2  1  RecA       recA bacterial DNA recombination protein
      2e-05   24.1   0.1    0.00031   20.2   0.0    2.4  3  ATPase     KaiC
     0.0029   17.0   0.0     0.0064   15.8   0.0    1.5  1  DnaB_C     DnaB-like helicase C terminal domain
  ------ inclusion threshold ------
      0.014   15.1   0.0       0.03   14.0   0.0    1.5  1  IstB_IS21  IstB-like ATP binding protein
      0.032   13.8   0.0       0.22   11.1   0.0    2.0  1  AAA_25     AAA domain
      0.071   12.2   0.3        7.7    5.5   0.0    2.1  2  PAXNEB     PAXNEB protein


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.5e-10   1.1e-06      14     189 ..      77     241 ..      64     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.5e-10
                 HSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE-- CS
       Rad51  14 sellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRay 112
                  ++ q +t +  lD+lLgGG++ g + ei G  +sGk q++ + +v + ++     + ++++++d +  + p  + +i       +++ ++ v y   +
  CDO70979.1  77 ITVRQHSTACPPLDRLLGGGLKRGFVLEINGPPGSGKEQMAAN-AVRTFVD-----SGQQVLFVDMQNMVPPATIKRILISSPTADSDRMDLVRYLSFH 169
                 45667889999*****************************976.5555554.....4578******************988877778889********* PP

                 STTHHHHHHHHTHHHHHHS.-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE---- CS
       Rad51 113 tiehqeellqqaaallaed.kfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaq 189
                 t+ +   ++++++a l  +   all+++s++  +           kR   l kl +tL++     +++v+it q + +
  CDO70979.1 170 TTTEFVAFVRTLPAYLEANpATALLVLNSLAFPFQP------HTIKRFAILDKLKQTLARACASMGLTVIITSQLTTK 241
                 *************9998762579******9977764......56789999************************9877 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.8e-09   1.7e-05      28     101 ..      76     148 ..      61     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.8e-09
                 -----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HHHHHHT CS
        RecA  28 klkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyakkl 101
                 + +v   s+    ld  lG GGl +G ++ei Gp  sGk  +a +a+     +g ++ f+d +  + p+  k++
  CDO70979.1  76 SITVRQHSTACPPLDRLLG-GGLKRGFVLEINGPPGSGKEQMAANAVRTFVDSGQQVLFVDMQNMVPPATIKRI 148
                 4567788999999******.******************************************999988766654 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-07   0.00031       3      56 ..      84     136 ..      82     149 .. 0.87
   2 ?   -1.2   0.0       0.4     1e+03     131     163 ..     166     197 ..     155     215 .. 0.75
   3 ?    1.0   0.0     0.085   2.2e+02     146     166 ..     220     240 ..     169     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
      ATPase   3 tgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtv 56 
                 t  + lD++l gG+ +g v  i G pG+GK  +a++ + + + + g++++fv +
  CDO70979.1  84 TACPPLDRLLGGGLKRGFVLEINGPPGSGKEQMAANAVRTFVDS-GQQVLFVDM 136
                 77788*****************************9976666666.*****9965 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.4
      ATPase 131 layeekeavaReilrqlvrvlkklgvTailvse 163
                 l   +++ ++ + +r+l   l+ +  Ta+lv +
  CDO70979.1 166 L-SFHTTTEFVAFVRTLPAYLEANPATALLVLN 197
                 5.55667777789999999**********9987 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.085
      ATPase 146 qlvrvlkklgvTailvsekss 166
                 +l+r  + +g+T i++s+ ++
  CDO70979.1 220 TLARACASMGLTVIITSQLTT 240
                 455555678888888888654 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0064       9     119 ..      89     198 ..      83     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
                 HHHHCT.SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEES.SSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHHHHHHSEEE CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   9 LDklts.GlqkgdliiiAarpsmGktalalniaenaavkeklpvavfsl.emsaeqlvqRllsseaeidskklrtgklkeedweklteaieelseaklf 105
                 LD+l++ Gl++g ++ i + p+ Gk  +a n +++ +  + ++v+++ + +m     ++R+l s  + ds+++   +     +++ te ++ +++++ +
  CDO70979.1  89 LDRLLGgGLKRGFVLEINGPPGSGKEQMAANAVRTFVD-SGQQVLFVDMqNMVPPATIKRILISSPTADSDRMDLVRYL--SFHTTTEFVAFVRTLPAY 184
                 8887752799999999*****************99886.56689999884699999**************999876554..478888888888999999 PP

                 EEEXSSXCHHHHHH CS
                 xxxxxxxxxxxxxx RF
      DnaB_C 106 iddtpaltvseirs 119
                 ++ +pa+ +  ++s
  CDO70979.1 185 LEANPATALLVLNS 198
                 99988887766655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-05      0.03      52      88 ..     105     141 ..      97     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
   IstB_IS21  52 llGpsGvGKshlaialgveavraglsvlfvrvedLve 88 
                 + Gp+G GK  +a+   +  v +g +vlfv ++++v 
  CDO70979.1 105 INGPPGSGKEQMAANAVRTFVDSGQQVLFVDMQNMVP 141
                 78********************************985 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.5e-05      0.22       9      65 ..      76     133 ..      68     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.5e-05
      AAA_25   9 avsvadlaapppprrwlvkgllpagelallaGapgtGKttlaldlalava.tGkpwlg 65 
                 + +v++  ++ pp++ l++g l +g +  + G+pg+GK  +a + + + + +G+++l 
  CDO70979.1  76 SITVRQHSTACPPLDRLLGGGLKRGFVLEINGPPGSGKEQMAANAVRTFVdSGQQVLF 133
                 566778888999999****999****************99999888888777776655 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0043        11      20      42 ..      83     105 ..      76     124 .. 0.88
   2 ?    5.5   0.0     0.003       7.7     176     272 ..     114     212 ..     104     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0043
      PAXNEB  20 StGtpsLDklLgGGLplGsilli 42 
                 St +p LD+lLgGGL  G +l i
  CDO70979.1  83 STACPPLDRLLGGGLKRGFVLEI 105
                 9999***********98877765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.003
      PAXNEB 176 eslkespryssllnqiqqll..kkesfsaptkknvlRivipsLlspllyd......yppeeskpedllkFLhsLrallrssnlvalitlplsliarsss 266
                 e++  ++ +++++++ qq+l  + +++ +p++  + Ri+i s   p+ ++         + ++ ++++ F+++L a l  + ++al  l +  ++ +++
  CDO70979.1 114 EQMAANA-VRTFVDSGQQVLfvDMQNMVPPAT--IKRILISS---PTADSdrmdlvRYLSFHTTTEFVAFVRTLPAYLEANPATALLVLNSLAFPFQPH 206
                 5556666.888888888766214455566666..****9976...4443322234533479999************************99999999888 PP

      PAXNEB 267 lvrkie 272
                  ++++ 
  CDO70979.1 207 TIKRFA 212
                 888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1877.77
//
Query:       CDO70980.1  [L=415]
Description: hypothetical protein BN946_scf184830.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-27   95.3   0.0    2.1e-11   43.5   0.0    3.2  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    9.9e-07   28.5   0.0      0.084   12.8   0.0    3.8  3  RRM_occluded  Occluded RNA-recognition motif
    0.00038   20.0   0.0       0.66    9.6   0.0    2.3  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
      0.036   14.1   0.0        0.1   12.6   0.0    1.8  1  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
       0.14   12.3   0.0       0.27   11.4   0.0    1.4  1  RRM_7         RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.7e-08   0.00017       3      66 ..      20      80 ..      18      83 .. 0.94
   2 !   43.5   0.0   5.8e-15   2.1e-11       1      69 [.     109     177 ..     109     178 .. 0.98
   3 !   26.9   0.0     9e-10   3.2e-06      13      64 ..     263     315 ..     249     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.7e-08
                EESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  3 VgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66
                V+n++  v+++e+ +lF++ +G i++++  +d   + +++   +F ++++A+kAl  + g++++g
  CDO70980.1 20 VNNIADAVSRREILDLFNNlIGNITKCDELYD---RGRRYYALTFSNQDAAKKALC-MSGYNVDG 80
                99*****************************9...********************9.99999887 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 5.8e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+V +Lp+d+t+ e  elF+ fG + ++ +  + ++ s++ +f+ + s+ +A+ A+e ln+k+++g+++
  CDO70980.1 109 LYVLGLPFDLTKAEFAELFGRFGAVAHAVILATVDNASRRRGFIVMGSHHEAKVAMEGLNRKEIKGHVI 177
                 79****************************************************************998 PP

  == domain 3  score: 26.9 bits;  conditional E-value: 9e-10
                 HHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1  13 eeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkkl 64 
                 ++L+ l++++G+ik+++l +  + ++++  a+Ve++s ++A++A +al+g+ +
  CDO70980.1 263 SDLHPLLGPYGEIKKLELLPCsSGDRTHVSAIVEYASISQATDAAQALDGQAY 315
                 79*******************9****************************876 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00042       1.5       6      76 ..      20      91 ..      16      93 .. 0.76
   2 ?    1.3   0.0     0.088   3.2e+02      49      70 ..     157     179 ..     111     182 .. 0.87
   3 !   12.8   0.0   2.3e-05     0.084      20      66 ..     267     318 ..     260     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00042
  RRM_occluded  6 llplsDtvnkariralveekegeikkivLvpdheGAive.fkdekiagkasLaLdgsefegkklrcGtvkdL 76
                  + +++D v++ +i +l+++  g+i+k     d +        ++++a+k +L + g++ +g  l +++v +L
    CDO70980.1 20 VNNIADAVSRREILDLFNNLIGNITKCDELYDRGRRYYAlTFSNQDAAKKALCMSGYNVDGVPLAVSSVPSL 91
                  6688888888888888888878887776555554443330347789********************999877 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.088
  RRM_occluded  49 kiagkasL.aLdgsefegkklrc 70 
                   ++ +k+++  L+ +e++g+++ +
    CDO70980.1 157 HHEAKVAMeGLNRKEIKGHVIDV 179
                   5568888845*********9987 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.3e-05
  RRM_occluded  20 alveekegeikkivLvp......dheGAivefkdekiagkasLaLdgsefegk 66 
                    l+ ++ geikk+ L p       h +Aive+++ ++a  a+ aLdg+ +++ 
    CDO70980.1 267 PLLGPY-GEIKKLELLPcssgdrTHVSAIVEYASISQATDAAQALDGQAYSNV 318
                   567788.99999999995444445778**********************9986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00018      0.66      41      97 ..     120     180 ..      92     191 .. 0.84
   2 !    8.1   0.0   0.00054       1.9       9      88 ..     230     314 ..     223     329 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
       RRM_5  41 ldklFnlfclYgnvervkflktkketa....lvqmgdasaveravqHLnnaklfgkrleva 97 
                   +   lf+ +g v++  +l t ++++    ++ mg+  +++ a++ Ln +++ g+ ++v 
  CDO70980.1 120 KAEFAELFGRFGAVAHAVILATVDNASrrrgFIVMGSHHEAKVAMEGLNRKEIKGHVIDVS 180
                 45566799************999876444449***********************999886 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00054
       RRM_5   9 lasvaatgspgaagvaegsVllVyglep.dkvnldklFnlfclYgnvervkflktkke.....talvqmgdasaveravqHLnnak 88 
                  +++ +++ +g   ++++s l + +l    ++ l+ l  l++ Yg+++++ +l    +      a+v+ ++ s++  a q L ++ 
  CDO70980.1 230 ITPPSEYPPTGSFAMPSSS-LAIRNLPAvLFSQLSDLHPLLGPYGEIKKLELLPCSSGdrthvSAIVEYASISQATDAAQALDGQA 314
                 5566666666666665444.5566775415678899*****************876653333369**************9999986 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.8e-05       0.1      14      53 .]      29      71 ..      25      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
  Nup35_RRM_2 14 ielVlehFas.fGeIvkhyvp..kevsvmyvkfesekdaekAL 53
                 + ++l+ F++ +G+I+k +    +++ ++ ++f + ++a+kAL
   CDO70980.1 29 RREILDLFNNlIGNITKCDELydRGRRYYALTFSNQDAAKKAL 71
                 56788899*99******65444499*****************8 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.5e-05      0.27       2      29 ..     107     134 ..     106     150 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.5e-05
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvl 29 
                 r ++v GlP D+t++e  + f++fg+v+
  CDO70980.1 107 RNLYVLGLPFDLTKAEFAELFGRFGAVA 134
                 568999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2802.13
//
Query:       CDO70981.1  [L=601]
Description: hypothetical protein BN946_scf184830.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-31  108.2   0.1    1.6e-16   61.1   0.0    3.2  2  ABC_tran         ABC transporter
    2.4e-14   52.8   5.4    5.9e-14   51.6   5.4    1.7  1  RLI              Possible Fer4-like domain in RNase L inhibit
    6.7e-11   42.5   3.5       0.37   10.6   1.4    4.4  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    9.4e-11   41.6   2.4     0.0053   16.2   0.1    3.9  4  SMC_N            RecF/RecN/SMC N terminal domain
    6.9e-07   28.8   3.2    6.9e-07   28.8   3.2    2.5  2  Fer4             4Fe-4S binding domain
    1.1e-05   25.4   0.1      0.088   12.7   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
    1.3e-05   25.7   0.1       0.12   12.9   0.1    2.7  2  AAA              ATPase family associated with various cellul
    2.4e-05   24.8   0.0       0.24   11.7   0.0    2.6  2  AAA_16           AAA ATPase domain
    7.8e-05   22.6   0.9      0.023   14.6   0.0    2.5  2  NACHT            NACHT domain
    0.00011   22.1   0.1       0.29   10.8   0.0    2.5  2  AAA_15           AAA ATPase domain
    0.00016   21.9   0.0      0.067   13.5   0.0    2.5  2  AAA_22           AAA domain
     0.0002   21.7   0.1       0.22   11.9   0.0    2.8  2  RNA_helicase     RNA helicase
    0.00055   19.9   2.2    0.00055   19.9   2.2    2.4  2  Fer4_6           4Fe-4S binding domain
    0.00066   19.7   0.0       0.12   12.3   0.0    2.5  2  Rad17            Rad17 P-loop domain
    0.00069   19.2   0.4      0.016   14.7   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
     0.0011   18.7   1.8        0.2   11.2   0.0    2.3  2  SRP54            SRP54-type protein, GTPase domain
     0.0016   18.6   0.0       0.85    9.8   0.0    2.5  2  AAA_33           AAA domain
     0.0019   17.9   0.1       0.48   10.1   0.0    2.4  2  AAA_24           AAA domain
     0.0022   17.7   1.4        1.5    8.6   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0024   18.4   0.5     0.0024   18.4   0.5    2.4  2  Fer4_7           4Fe-4S dicluster domain
     0.0029   17.7  14.8     0.0042   17.2   1.1    2.4  2  Fer4_10          4Fe-4S dicluster domain
      0.004   17.2   0.6      0.004   17.2   0.6    2.5  2  Fer4_2           4Fe-4S binding domain
      0.006   16.7  11.8      0.011   15.8  11.8    1.5  1  Fer4_21          4Fe-4S dicluster domain
      0.006   15.8   0.0        0.3   10.2   0.0    2.3  2  NB-ARC           NB-ARC domain
     0.0066   16.6  11.5      0.014   15.5  11.5    1.5  1  Fer4_9           4Fe-4S dicluster domain
     0.0071   16.3   0.1       0.26   11.3   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
  ------ inclusion threshold ------
      0.012   15.3   0.1        4.9    6.8   0.0    3.0  3  Thymidylate_kin  Thymidylate kinase
      0.012   16.1   0.1        2.8    8.5   0.0    2.6  2  AAA_18           AAA domain
      0.014   15.7   0.2        3.1    8.0   0.0    2.4  2  AAA_28           AAA domain
      0.023   14.7   1.8       0.73    9.8   0.0    3.1  2  AAA_5            AAA domain (dynein-related subfamily)
      0.025   15.5   0.3      0.025   15.5   0.3    2.7  2  Fer4_16          4Fe-4S double cluster binding domain
       0.03   14.6   0.0        5.2    7.4   0.0    2.8  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.031   14.0   0.2        3.5    7.3   0.0    2.4  2  AAA_30           AAA domain
      0.031   13.5   0.0        3.4    6.8   0.0    2.2  2  KAP_NTPase       KAP family P-loop domain
      0.037   14.3   0.7        0.2   11.9   0.0    2.2  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.044   12.4   0.1       0.79    8.3   0.0    2.3  2  AAA_13           AAA domain
      0.049   13.7   0.2         11    6.1   0.0    3.1  2  AAA_14           AAA domain
      0.057   13.1   0.0        5.6    6.6   0.0    2.4  2  VirE             Virulence-associated protein E
       0.12   12.9   0.1       0.12   12.9   0.1    2.4  2  Fer4_8           4Fe-4S dicluster domain
       0.13   12.1   0.2        1.4    8.7   0.0    2.2  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
       0.15   11.3   0.1        3.9    6.7   0.0    2.5  2  Zeta_toxin       Zeta toxin
       0.21   12.0   6.9       0.39   11.2   0.2    2.6  2  AAA_23           AAA domain
       0.24   11.5   0.5         29    4.8   0.0    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
       0.24   11.3   2.7         19    5.1   0.0    3.5  3  NTPase_1         NTPase
       0.39   11.3  12.3       0.12   13.0   1.4    2.4  2  Fer4_4           4Fe-4S binding domain
        8.2    7.1  12.4      0.097   13.2   1.2    2.4  2  Fer4_17          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   4.1e-19   1.6e-16       9     136 ..     101     246 ..      99     247 .. 0.74
   2 !   41.9   0.1   3.3e-13   1.3e-10       8     136 ..     371     491 ..     367     492 .. 0.73

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 4.1e-19
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE...........EETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGei...........lldgkdlkeqeleslrkeigvlpqepqlfpeltvren................. 79 
                 ++g+++++vG nG GKSt lk+lag+lkp+ G+             ++g +l++  +++l+ +++ l              +                 
  CDO70981.1 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYddppdwqeilkYFRGSELQNYFTKVLEDNLKALI-------------Kpqyvdhipraikgnmkv 186
                 58*******************************95555555555444455555544444444444442.............133444444444444888 PP

                 .......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                         ++++ +k+ + l+l+++  + v     +LSgG+ qr a+a++ +++++++++DEp+
  CDO70981.1 187 sdmldgkLERDNKQKMCDDLELNDVLSREV----VQLSGGELQRFAIAMTCVQRADVYMFDEPS 246
                 888887644455788999999999888888....*****************************7 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 3.3e-13
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.....HHHTCHHHHHHHSTTGGTTCB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.....esdeeiekalsklglkelkdt 100
                 +  +e+++++GenG+GK+t++kllag + ++e e +    +lk  +  +s+   +++l  +           +        +  +++l+ ++l+++ d+
  CDO70981.1 371 FTDSEIIVMLGENGTGKTTFVKLLAGDMPDQETEKQSLAVSLKPqTISPSFPGTVRMLLLK-----------RikaafMHPQFNTDVLKPMNLEQIMDQ 458
                 66799**********************9887776544444444433344555555555444...........122222333446789999999998888 PP

                 GESTTSGGS-HHHHHHHHHHHHHHH.TSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
    ABC_tran 101 vvksspssLSgGqkqrvalarallk.kpkllllDEpt 136
                  v    ++LSgG+ qrva++ al k + +++l+DEp+
  CDO70981.1 459 EV----KTLSGGELQRVAIVLALGKpNVSVYLIDEPS 491
                 88....**************9998746799******7 PP

>> RLI  Possible Fer4-like domain in RNase L inhibitor, RLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   5.4   1.5e-16   5.9e-14       1      35 []       6      37 ..       6      37 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.5e-16
                --EEEES---------TTHHHHHTTSEEEESS--S CS
         RLI  1 mrlAivdadqCdPKKCtgkkcarfcpvrlvrtgkk 35
                +r+Aivda++C+PK+C + +c+++cpv  v++gk+
  CDO70981.1  6 TRIAIVDANRCKPKRCAQ-ECKKSCPV--VKMGKL 37
                59****************.********..****95 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   1.4   0.00095      0.37       3      20 ..     107     124 ..     105     141 .. 0.85
   2 !    9.9   0.0    0.0015      0.58     223     284 ..     205     263 ..     129     282 .. 0.67
   3 !   10.5   0.0     0.001      0.39       1      43 [.     376     415 ..     376     425 .. 0.69
   4 !    8.4   0.0    0.0044       1.7     237     273 ..     463     497 ..     429     521 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00095
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +l+G Ng GKS+ L++l 
  CDO70981.1 107 GLVGTNGIGKSTALKILA 124
                 79***************5 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0015
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellke 284
                  le +d   + + +lS G ++ +a++  + +++   +++ +DEp + L+ k   + +e+++e
  CDO70981.1 205 DLELNDVLSREVVQLSGGELQRFAIAMTCVQRA---DVYMFDEPSSYLDIKQRLKAAEVIRE 263
                 445555556667889******************...9************9555444444433 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.001
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggir 43 
                 + v+ G Ng+GK+++ ++l +    ++d+e ++ +l  + +++
  CDO70981.1 376 IIVMLGENGTGKTTFVKLLAGD---MPDQETEKQSLAVSLKPQ 415
                 57999*************9542...566665555555555555 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0044
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPk 273
                 lS G ++  a+++al   +   s++liDEp ++L+ +
  CDO70981.1 463 LSGGELQRVAIVLALGKPNV--SVYLIDEPSSFLDSE 497
                 57777777688888888887..9***********983 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.23        88      25      40 ..     104     119 ..      89     131 .. 0.81
   2 !   16.2   0.1   1.4e-05    0.0053     124     189 ..     209     267 ..     139     287 .. 0.76
   3 ?    3.9   0.1     0.082        32      23      41 ..     373     391 ..     361     395 .. 0.82
   4 !   15.8   0.0   1.9e-05    0.0073     120     186 ..     405     509 ..     397     535 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.23
                 SEEEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnl 40 
                 ++  +vG NG GKs  
  CDO70981.1 104 QVLGLVGTNGIGKSTA 119
                 56779*********75 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.4e-05
                 HHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 +++l+++ +   +LSgGe +  a+a+      v++a +y++De  + LD k++ k ae+++e  + 
  CDO70981.1 209 NDVLSREVV---QLSGGELQRFAIAMT----CVQRADVYMFDEPSSYLDIKQRLKAAEVIRELLTP 267
                 333333333...79****998887765....789999************************97654 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.082
                 TSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnll 41 
                 ++++ +++G+NG GK+ ++
  CDO70981.1 373 DSEIIVMLGENGTGKTTFV 391
                 45678899********987 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHCTT-STT.........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHH CS
                 xxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske.........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvk 177
                 k+ ++  l+ + is++                                         +LSgGe  L  +a+++A+ k    ++yl+De  + LD +++ 
  CDO70981.1 405 KQSLAVSLKPQTISPSfpgtvrmlllkrikaafmhpqfntdvlkpmnleqimdqevkTLSGGE--LQRVAIVLALGKP-NVSVYLIDEPSSFLDSEQRI 500
                 5555555666666666666666666666666666666666666666666666666669****9..5677888888775.5789***************9 PP

                 HHHHHHHHH CS
                 xxxxxxxxx RF
       SMC_N 178 kvaellkek 186
                 + ++++k+ 
  CDO70981.1 501 IASKVIKRF 509
                 999999953 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.9       7.5   2.9e+03      13      20 ..      24      31 ..      20      32 .. 0.79
   2 !   28.8   3.2   1.8e-09   6.9e-07       3      23 ..      50      70 ..      48      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 7.5
                HHHHHSTT CS
        Fer4 13 aCvevCPv 20
                +C + CPv
  CDO70981.1 24 ECKKSCPV 31
                58888887 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 1.8e-09
                EETTTSSS-THHHHHSTTTEE CS
        Fer4  3 ideekCigCGaCvevCPvgAI 23
                i e +CigCG+Cv+ CP++AI
  CDO70981.1 50 ISEFLCIGCGICVKKCPFEAI 70
                67789***************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0021      0.81      88     125 ..      92     129 ..      68     136 .. 0.76
   2 !   12.7   0.0   0.00022     0.088      96     129 ..     371     405 ..     334     412 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0021
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpelel 125
                   +l++l +   +++  lvG  G+GKSt ++ l+++l+ 
   CDO70981.1  92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
                  5566666666789999***************9998765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00022
                  HCTTSEEEEECSTTSSHHHHHHHHCTT-.----S- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpel.elktge 129
                    +++++v++G+ G GK+t+++ l++++ +++t++
   CDO70981.1 371 FTDSEIIVMLGENGTGKTTFVKLLAGDMpDQETEK 405
                  456699*******************9764777765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0022      0.87       3      51 ..     108     169 ..     106     181 .. 0.75
   2 !   12.9   0.1    0.0003      0.12       2      23 ..     378     405 ..     377     500 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0022
                 EESSTTSSHHHHHHHHHHHHTHE.............EEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelgve.............fleisgsellskyvgesekkirelfk 51 
                 l+G+ G+GK+++ k +a +l+ +             +  + gsel + + +  e+++++l+k
  CDO70981.1 108 LVGTNGIGKSTALKILAGKLKPNlgryddppdwqeiLKYFRGSELQNYFTKVLEDNLKALIK 169
                 89*****************9755444455555556566677777777777777777776665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0003
                 EEESSTTSSHHHHHHHHHHHH......T CS
         AAA   2 llyGppGtGKTllakavakel......g 23 
                 ++ G  GtGKT+++k +a ++      +
  CDO70981.1 378 VMLGENGTGKTTFVKLLAGDMpdqeteK 405
                 678***************9985444331 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00062      0.24      16     127 ..      94     216 ..      88     239 .. 0.57
   2 !   10.5   0.0    0.0015       0.6      24      51 ..     371     401 ..     362     562 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00062
      AAA_16  16 lervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdql...esaipy......sa.laqalareellrqlldeaesaeleawreklee 103
                 l+r+ ++rp +++ l+G  G+GKs+ ++ l+  l+ +      g++d+    ++ + y      +  ++++l ++ l + ++     + +++ ++++++
  CDO70981.1  94 LHRLPTPRPgQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRYDDPpdwQEILKYfrgselQNyFTKVL-EDNLKALIKP----QYVDHIPRAIKG 182
                 67899999989999*****************999999.....555555433333344444322133233333.3233222222....355666666666 PP

      AAA_16 104 alaavpelagaea..........srllellkrll 127
                 +++ ++ l+g+++            l+++l+r +
  CDO70981.1 183 NMKVSDMLDGKLErdnkqkmcddLELNDVLSREV 216
                 6663333333333333344444444444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0015
      AAA_16  24 p...elvllsGesGvGKsslvrellralekd 51 
                     e+++  Ge G+GK++ v+ l+  + ++
  CDO70981.1 371 FtdsEIIVMLGENGTGKTTFVKLLAGDMPDQ 401
                 2444999**************9998766665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.5     0.027        10       3      25 ..     106     128 ..     104     133 .. 0.86
   2 !   14.6   0.0   5.9e-05     0.023       2      48 ..     376     420 ..     375     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.027
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 + l G +G+GK+t l+ la +++
  CDO70981.1 106 LGLVGTNGIGKSTALKILAGKLK 128
                 5689************9998876 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5.9e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrs 48 
                 ++++ Ge+G GKTt+++ la ++ +++ +++  +l   l+ +++s s
  CDO70981.1 376 IIVMLGENGTGKTTFVKLLAGDMPDQETEKQ--SLAVSLKPQTISPS 420
                 6899*****************9999998885..77777777777765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00074      0.29      28      43 ..     108     123 ..     102     212 .. 0.84
   2 !    8.6   0.0    0.0035       1.4      23      43 ..     374     394 ..     369     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00074
      AAA_15  28 liGkNnsGKSsileal 43 
                 l+G+N++GKS++l++l
  CDO70981.1 108 LVGTNGIGKSTALKIL 123
                 8*************99 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0035
      AAA_15  23 eeltvliGkNnsGKSsileal 43 
                 +e+ v  G+N++GK++++++l
  CDO70981.1 374 SEIIVMLGENGTGKTTFVKLL 394
                 3489999***********998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.039        15       6      29 ..     104     127 ..     101     147 .. 0.85
   2 !   13.5   0.0   0.00017     0.067       6      71 ..     375     461 ..     372     518 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.039
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++l ++G  G+GK+t l+ l+ +l
  CDO70981.1 104 QVLGLVGTNGIGKSTALKILAGKL 127
                 566799***********9998776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00017
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdl.lrellralglelka.................e 71 
                  i+v  Ge GtGKTt ++ l+   + ++  ++      +p+  ++ ++ +++ + l l+++  a+ +++ +                 +
  CDO70981.1 375 EIIVMLGENGTGKTTFVKLLAGDMPDQETEKQslavsLKPQ--TISPSFPGTVRMLlLKRIKAAFMHPQFNtdvlkpmnleqimdqevK 461
                 589999**************998876655555654444444..4555555555555599999999998888656533333333333333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.022       8.5       3      25 ..     108     130 ..     106     155 .. 0.85
   2 !   11.9   0.0   0.00056      0.22       1      30 [.     377     406 ..     377     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.022
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l+G +g+GKSt+ k La +l  +
    CDO70981.1 108 LVGTNGIGKSTALKILAGKLKPN 130
                   78*************99988755 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00056
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkk 30 
                   i++ G++g+GK+t++k La ++ ++  +k+
    CDO70981.1 377 IVMLGENGTGKTTFVKLLAGDMPDQETEKQ 406
                   6899***************99987763333 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   3.1      0.14        55       2      21 ..       9      31 ..       8      35 .. 0.83
   2 !   19.9   2.2   1.4e-06   0.00055       8      24 .]      54      70 ..      47      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.14
      Fer4_6  2 veidpdkCi..gCgd.CvrvCPe 21
                + +d+++C    C   C + CP 
  CDO70981.1  9 AIVDANRCKpkRCAQeCKKSCPV 31
                679*****9777*666******5 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.4e-06
      Fer4_6  8 kCigCgdCvrvCPegai 24
                +CigCg Cv+ CP+ ai
  CDO70981.1 54 LCIGCGICVKKCPFEAI 70
                8*************998 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0    0.0003      0.12      43      80 ..     101     138 ..      89     174 .. 0.83
   2 ?    4.6   0.0     0.069        27      46      70 ..     375     399 ..     363     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0003
       Rad17  43 rkkriLLisGPsGCgkstvvkvLskelgiklrewlnpv 80 
                 r+ ++L + G  G gkst++k+L+ +l ++l  + +p 
  CDO70981.1 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYDDPP 138
                 56789*******************99999887776665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.069
       Rad17  46 riLLisGPsGCgkstvvkvLskelg 70 
                 +i+++ G  G gk+t vk L+  + 
  CDO70981.1 375 EIIVMLGENGTGKTTFVKLLAGDMP 399
                 599999**************97665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1       0.5     2e+02      38      58 ..     108     128 ..     101     133 .. 0.83
   2 !   14.7   0.0   4.1e-05     0.016      36      97 ..     377     440 ..     368     447 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.5
       AAA_7  38 lvGptGtGKtviikdllkkld 58 
                 lvG+ G GK++ +k l  kl+
  CDO70981.1 108 LVGTNGIGKSTALKILAGKLK 128
                 89*********9998777776 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.1e-05
       AAA_7  36 vllvGptGtGKtviikdllkkld..kekylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97 
                 +++ G+ GtGKt+ +k l   ++  +++ +sl ++++ qt + ++  ++   l kr k  ++ p
  CDO70981.1 377 IVMLGENGTGKTTFVKLLAGDMPdqETEKQSLAVSLKPQTISPSFPGTVRMLLLKRIKAAFMHP 440
                 7889***************9999334456788899999**********9999999999988765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5     0.014       5.6       3      26 ..     105     128 ..     103     134 .. 0.85
   2 !   11.2   0.0   0.00052       0.2       2      28 ..     375     401 ..     374     412 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
                 EEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallk 26 
                 v+ lvG++G+GK t+l  La +lk
  CDO70981.1 105 VLGLVGTNGIGKSTALKILAGKLK 128
                 5679************99998877 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00052
                 EEEEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke 28 
                 ++i+++G +G+GKTt +  La  + ++
  CDO70981.1 375 EIIVMLGENGTGKTTFVKLLAGDMPDQ 401
                 589**************9999777666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.022       8.5       4      25 ..     108     129 ..     105     221 .. 0.85
   2 !    9.8   0.0    0.0022      0.85       2      21 ..     377     396 ..     376     436 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.022
      AAA_33   4 lvGlpGsGKstlaerllkklga 25 
                 lvG +G GKst ++ l+ kl+ 
  CDO70981.1 108 LVGTNGIGKSTALKILAGKLKP 129
                 89************99999874 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0022
      AAA_33   2 vllvGlpGsGKstlaerllk 21 
                 +++ G +G+GK+t+++ l+ 
  CDO70981.1 377 IVMLGENGTGKTTFVKLLAG 396
                 89*************98874 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.036        14       4      22 ..     105     123 ..     103     147 .. 0.86
   2 !   10.1   0.0    0.0012      0.48       5      22 ..     377     394 ..     374     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.036
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  + ++G +giGK+t +k l
  CDO70981.1 105 VLGLVGTNGIGKSTALKIL 123
                 57899*********99977 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 i++ G++g+GKTt++k l
  CDO70981.1 377 IVMLGENGTGKTTFVKLL 394
                 8999***********987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.004       1.5      12      39 ..      92     120 ..      88     129 .. 0.83
   2 ?    7.3   0.3      0.01       3.9      22      39 ..     374     391 ..     365     396 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.004
      AAA_29  12 fdghtieidlkg.atlltGpsGsGKSTll 39 
                 f+ h+++  + g +  l+G++G GKST l
  CDO70981.1  92 FKLHRLPTPRPGqVLGLVGTNGIGKSTAL 120
                 5557777777787788***********76 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.01
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                 ++++++ G++G+GK+T++
  CDO70981.1 374 SEIIVMLGENGTGKTTFV 391
                 4578899*********97 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.5       1.1   4.3e+02      34      50 ..      12      31 ..       3      34 .. 0.68
   2 !   18.4   0.5   6.2e-06    0.0024       2      19 ..      55      72 ..      54      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 1.1
      Fer4_7 34 dpekCl..gCga.CvavCPt 50
                d+++C    C + C + CP+
  CDO70981.1 12 DANRCKpkRCAQeCKKSCPV 31
                56677433576668888886 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6.2e-06
      Fer4_7  2 CigCgaCvaaCpvkaiel 19
                CigCg Cv+ Cp +ai +
  CDO70981.1 55 CIGCGICVKKCPFEAIAI 72
                *************99976 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4  16.4    0.0014      0.54       2      56 .]       9      66 ..       8      66 .. 0.80
   2 !   17.2   1.1   1.1e-05    0.0042       4      23 ..      50      69 ..      47      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0014
     Fer4_10  2 vvidddtC..irCg.kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56
                +++d+++C   rC+ +C+k+CP+   ++  ++ +  ++   +    C+gcg Cv++CP
  CDO70981.1  9 AIVDANRCkpKRCAqECKKSCPVVKMGKLCIEVKPSDKIAFISEFLCIGCGICVKKCP 66
                578999**6669*99********66666666666666666667788***********9 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.1e-05
     Fer4_10  4 idddtCirCgkCvkaCPadl 23
                i +  Ci+Cg Cvk CP+ +
  CDO70981.1 50 ISEFLCIGCGICVKKCPFEA 69
                67789************955 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   2.6       2.9   1.1e+03       4      21 ..      10      30 ..       7      31 .. 0.68
   2 !   17.2   0.6     1e-05     0.004       9      21 ..      54      66 ..      45      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 2.9
      Fer4_2  4 vvdtdrC.i.gC.gaCvsaCP 21
                 vd++rC   +C   C ++CP
  CDO70981.1 10 IVDANRCkPkRCaQECKKSCP 30
                578888853578448888898 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1e-05
      Fer4_2  9 rCigCgaCvsaCP 21
                 CigCg+Cv+ CP
  CDO70981.1 54 LCIGCGICVKKCP 66
                7************ PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  11.8   2.9e-05     0.011       1      57 [.       9      70 ..       9      72 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.9e-05
     Fer4_21  1 AridedkCi..gC.gkCliaCe..dtshqaieidaktvlkvved.eCvGCnlCssvCPvedci 57
                A++d ++C    C ++C ++C+  + +  +ie++++ +++ +++  C+GC +C++ CP  ++i
  CDO70981.1  9 AIVDANRCKpkRCaQECKKSCPvvKMGKLCIEVKPSDKIAFISEfLCIGCGICVKKCPF-EAI 70
                5667777732245235777776223467899***999988875549************7.777 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00076       0.3      21      91 ..     104     175 ..      93     232 .. 0.83
   2 ?    3.1   0.1      0.12        46      19      38 ..     373     392 ..     366     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00076
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT.EEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdevegrFd.svawvvvsktdkseeiletilkeLslseddleekeeves 91 
                  v++lvG  G+GK+t +k    k++   gr+d    w  + k +  +e+++   k+L+++ + l + + v++
  CDO70981.1 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRYDdPPDWQEILKYFRGSELQNYFTKVLEDNLKALIKPQYVDH 175
                 599***************99999999999**97789999999999999999999999888776666666665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
                 CSEEEEEEESTTSSHHHHHH CS
      NB-ARC  19 qslvvalvGmgGvGKttlak 38 
                 +s ++ + G  G GKtt +k
  CDO70981.1 373 DSEIIVMLGENGTGKTTFVK 392
                 455999***********987 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  11.5   3.6e-05     0.014       6      51 .]      19      70 ..      14      70 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.6e-05
      Fer4_9  6 gaCveaCpagvvvedaaerkarlraase......eaCigCgaCveaCpkgai 51
                ++C + C++   v + ++  ++++  ++        CigCg Cv++Cp +ai
  CDO70981.1 19 KRCAQECKKSCPVVKMGKLCIEVKPSDKiafiseFLCIGCGICVKKCPFEAI 70
                357777766666666666666666655566778899************9876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.4   1.6e+02      18      43 ..      97     127 ..      80     137 .. 0.77
   2 !   11.3   0.0   0.00067      0.26      19      43 ..     374     398 ..     355     421 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.4
                 H.....TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  18 l.....gdvilLeGdLGaGKTtlvrglakal 43 
                 l     g+v+ L G  G GK+t  + la +l
  CDO70981.1  97 LptprpGQVLGLVGTNGIGKSTALKILAGKL 127
                 24555678999************99998776 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00067
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 +++i++ G+ G+GKTt+v+ la  +
  CDO70981.1 374 SEIIVMLGENGTGKTTFVKLLAGDM 398
                 5689***************998665 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.013       4.9       3      47 ..     110     152 ..     108     186 .. 0.80
   2 ?   -1.2   0.0       3.5   1.4e+03      63      95 ..     252     283 ..     236     307 .. 0.81
   3 ?    4.8   0.0     0.051        20       3      24 ..     381     402 ..     381     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.013
                      ESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvltrepggteiGekirelll 47 
                      G +G GK+t +++l+ +lk +  +     +p+  ei + +r++ l
       CDO70981.1 110 GTNGIGKSTALKILAGKLKPNLGR--YDDPPDWQEILKYFRGSEL 152
                      899****************99865..6777777777777777666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.5
                      HHHHHTTHHHHHHHHHTT-EEEEES-HHHHHHH CS
  Thymidylate_kin  63 adriehleekikpalkqgktvivdRylfSslaY 95 
                      ++r  +++e+i + l+ +  vi   + +S+l Y
       CDO70981.1 252 KQR-LKAAEVIRELLTPNNYVIAVEHDLSVLDY 283
                      566.67778999999999999999999888877 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.051
                      ESTTSSHHHHHHHHHHHHHHTT CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeeg 24 
                      G +G+GKtt+++ll+  ++++ 
       CDO70981.1 381 GENGTGKTTFVKLLAGDMPDQE 402
                      668***********98887765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0073       2.8       3      67 ..     108     167 ..     106     217 .. 0.67
   2 ?    4.9   0.0     0.091        35       1      19 [.     377     395 ..     377     415 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0073
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf.........gvnlrdvakenglllevdpe.aldeskrldedkldklldaleen 67 
                 l Gt G GK+t  k L+ +l  +         +               ++   ++ +  +l+  ++++l d+l++ 
  CDO70981.1 108 LVGTNGIGKSTALKILAGKLkPNlgryddppdW---------------QE-IlKYFRGSELQNYFTKVLEDNLKAL 167
                 89**************99972222333333331...............22.1244455555555555555555554 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.091
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 I+  G  G+GKtt+ k L+
  CDO70981.1 377 IVMLGENGTGKTTFVKLLA 395
                 6667889*********996 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.055        21       4      21 ..     108     125 ..     106     136 .. 0.87
   2 ?    8.0   0.0     0.008       3.1       2      20 ..     377     395 ..     376     409 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.055
      AAA_28   4 itGgestGKTtlleaLaa 21 
                 ++G+ + GK+t l+ La 
  CDO70981.1 108 LVGTNGIGKSTALKILAG 125
                 68*************994 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.008
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 iv++G  +tGKTt ++ La
  CDO70981.1 377 IVMLGENGTGKTTFVKLLA 395
                 899**************99 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3      0.38   1.5e+02       4      23 ..     108     127 ..     106     134 .. 0.86
   2 ?    9.8   0.0    0.0019      0.73       2      24 ..     377     400 ..     376     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.38
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 LvG  G+gKs+  + la  l
  CDO70981.1 108 LVGTNGIGKSTALKILAGKL 127
                 9***********99999877 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0019
                 EEEE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.n 24 
                 ++++G+ GtgK+++++ la  +  
  CDO70981.1 377 IVMLGENGTGKTTFVKLLAGDMpD 400
                 689***************987753 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.2       2.8   1.1e+03       4      14 ..      20      31 ..       6      48 .. 0.72
   2 ?   15.5   0.3   6.4e-05     0.025       2      18 ..      55      71 ..      54     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 2.8
     Fer4_16  4 tCgk.CaevCPt 14
                +C + C ++CP+
  CDO70981.1 20 RCAQeCKKSCPV 31
                344446666665 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.4e-05
     Fer4_16  2 CgtCgkCaevCPtnaik 18
                C++Cg C++ CP +ai 
  CDO70981.1 55 CIGCGICVKKCPFEAIA 71
                9***********99985 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.15        59      25      45 ..     211     231 ..     193     262 .. 0.78
   2 ?    7.4   0.0     0.013       5.2      12      46 ..     442     475 ..     439     499 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.15
     SbcCD_C  25 elsrssgtlSGGekqflayla 45 
                  lsr++ +lSGGe q +a  +
  CDO70981.1 211 VLSREVVQLSGGELQRFAIAM 231
                 489999*******98766544 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.013
     SbcCD_C  12 fevevrdedgkekelsrssgtlSGGekqflaylal 46 
                 f+ +v ++ + e+ ++++++tlSGGe q +a  +l
  CDO70981.1 442 FNTDVLKPMNLEQIMDQEVKTLSGGELQRVAI-VL 475
                 5556666666777799**********966543.33 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.084        33      19      40 ..     104     125 ..      97     134 .. 0.84
   2 ?    7.3   0.0     0.009       3.5      19      41 ..     375     397 ..     369     437 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.084
      AAA_30  19 rvavltGpAGtGKttalkalre 40 
                 +v  l+G  G GK+talk l+ 
  CDO70981.1 104 QVLGLVGTNGIGKSTALKILAG 125
                 68889************99875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.009
      AAA_30  19 rvavltGpAGtGKttalkalrea 41 
                  + v+ G  GtGKtt +k l+  
  CDO70981.1 375 EIIVMLGENGTGKTTFVKLLAGD 397
                 388999***********998755 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.036        14      13      46 ..      96     129 ..      85     269 .. 0.89
   2 ?    6.8   0.0    0.0087       3.4      22      56 ..     376     410 ..     365     539 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.036
  KAP_NTPase  13 septlatpivvgLygkWGsGKssllnkledelke 46 
                   pt++++ v+gL g  G GKs+ l+ l  +lk 
  CDO70981.1  96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
                 568999********************99988875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0087
  KAP_NTPase  22 vvgLygkWGsGKssllnkledelkefakpvrflfa 56 
                 +++  g+ G+GK++++++l  ++ ++  ++++l +
  CDO70981.1 376 IIVMLGENGTGKTTFVKLLAGDMPDQETEKQSLAV 410
                 56666888***************999754444444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2       2.7   1.1e+03       4      18 ..     108     122 ..     106     129 .. 0.83
   2 ?   11.9   0.0    0.0005       0.2       2      40 ..     377     416 ..     376     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.7
                 EESSTTSSHHHHHHC CS
         Roc   4 lvGdsgvGKtsllkr 18 
                 lvG +g+GK++ lk 
  CDO70981.1 108 LVGTNGIGKSTALKI 122
                 8*********98875 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0005
                 EEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEE CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltke 40 
                 +v++G++g+GKt+++k +  d  +++ ek+ ++v+++ ++
  CDO70981.1 377 IVMLGENGTGKTTFVKLLAGDMPDQEtEKQSLAVSLKPQT 416
                 79**************999888765515666677766555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.002      0.79      20      50 ..     378     405 ..     371     425 .. 0.74
   2 ?    1.3   0.1      0.26     1e+02     528     571 ..     483     524 ..     454     535 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
      AAA_13  20 liYGwNGaGKTtLSrllrslelgetepkfan 50 
                 ++ G NG+GKTt+ +ll+      + ++ ++
  CDO70981.1 378 VMLGENGTGKTTFVKLLAGD---MPDQETEK 405
                 567**************973...23333333 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
      AAA_13 528 kivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnl 571
                  +  iD P S LDs+   i++  ik  +l  +  k  fi  H +
  CDO70981.1 483 SVYLIDEPSSFLDSEQRIIASKVIKRFIL--HAKKTAFIIEHDF 524
                 5668*********************9995..3334456666666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.091        35       3      27 ..     104     128 ..     102     184 .. 0.81
   2 ?    6.1   0.0     0.028        11       3      39 ..     375     413 ..     373     520 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.091
      AAA_14   3 kilvitGaRrvGKTtllkqlikell 27 
                 ++l ++G   +GK+t lk l+ +l 
  CDO70981.1 104 QVLGLVGTNGIGKSTALKILAGKLK 128
                 68899************99987765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.028
      AAA_14   3 kilvitGaRrvGKTtllkqlikell..vkkesilyinld 39 
                 +i+v+ G   +GKTt++k l+ +     ++++ l ++l+
  CDO70981.1 375 EIIVMLGENGTGKTTFVKLLAGDMPdqETEKQSLAVSLK 413
                 79999*************999777666556666666655 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       5.6      52      75 ..     103     126 ..      80     173 .. 0.82
   2 ?    3.9   0.0       0.1        40      53      75 ..     375     397 ..     366     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
        VirE  52 DfvlvLvGkqgsgKstfleklgee 75 
                  +vl LvG  g+gKst l++l+++
  CDO70981.1 103 GQVLGLVGTNGIGKSTALKILAGK 126
                 57999****************654 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.1
        VirE  53 fvlvLvGkqgsgKstfleklgee 75 
                 +++v+ G+ g+gK+tf++ l+++
  CDO70981.1 375 EIIVMLGENGTGKTTFVKLLAGD 397
                 68999*************99654 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   2.3       1.3   5.1e+02       8      19 ..      21      33 ..      13      48 .. 0.75
   2 ?   12.9   0.1    0.0003      0.12       5      17 ..      55      67 ..      51     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.3
      Fer4_8  8 C.gaCqsaCpvlr 19
                C + C+++Cpv++
  CDO70981.1 21 CaQECKKSCPVVK 33
                5347888888887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0003
      Fer4_8  5 CieCgaCqsaCpv 17
                Ci+Cg C ++Cp+
  CDO70981.1 55 CIGCGICVKKCPF 67
                ***********93 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.84   3.3e+02       1      18 [.     110     127 ..     110     133 .. 0.87
   2 ?    8.7   0.0    0.0035       1.4       1      50 [.     381     432 ..     381     446 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.84
      CLP1_P   1 GpkdsGKSTlarlLlNya 18 
                 G +  GKST  ++L+ ++
  CDO70981.1 110 GTNGIGKSTALKILAGKL 127
                 67889*********9886 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0035
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkg..rkpvyvDlDvGqseispPgtislalver 50 
                 G++ +GK+T+++lL+  +  ++  ++ + v l +   + s Pgt+ + l++r
  CDO70981.1 381 GENGTGKTTFVKLLAGDMPDQEteKQSLAVSLKPQTISPSFPGTVRMLLLKR 432
                 8899**************9766324677999999999999999998877765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.34   1.3e+02      19      41 ..     106     128 ..      89     134 .. 0.79
   2 ?    6.7   0.0      0.01       3.9      18      60 ..     376     423 ..     370     464 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.34
  Zeta_toxin  19 illgGqpGAGKselaellkdele 41 
                 + l+G  G GKs++++ l+ +l+
  CDO70981.1 106 LGLVGTNGIGKSTALKILAGKLK 128
                 3489*************999886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.01
  Zeta_toxin  18 lillgGqpGAGKselaellkdele.....rqgnvvrldpDdlRelhPe 60 
                 +i++ G  G GK++  +ll+ ++      +q+ +v l+p ++ + +P 
  CDO70981.1 376 IIVMLGENGTGKTTFVKLLAGDMPdqeteKQSLAVSLKPQTISPSFPG 423
                 79999**************99998666666777888888877777776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.2      0.26     1e+02      24      38 ..     108     122 ..     102     127 .. 0.85
   2 ?   11.2   0.2     0.001      0.39      17      37 ..     371     392 ..     344     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.26
      AAA_23  24 ItGpNGaGKTTildA 38 
                 ++G NG GK+T l  
  CDO70981.1 108 LVGTNGIGKSTALKI 122
                 79*********9975 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.001
      AAA_23  17 F.skgltlItGpNGaGKTTild 37 
                 F ++ + +  G+NG+GKTT++ 
  CDO70981.1 371 FtDSEIIVMLGENGTGKTTFVK 392
                 3677899************986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.087        34       3      22 ..     107     126 ..     105     136 .. 0.85
   2 ?    4.8   0.0     0.074        29       2      27 ..     377     404 ..     376     522 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.087
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 ++vG    GKSt ++ l g+
  CDO70981.1 107 GLVGTNGIGKSTALKILAGK 126
                 89*************99987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.074
                 EEEEESTTSSHHHHHHHHHTS..TEEES CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge..kaivs 27 
                 ++ +G   +GK+t+++ l g+    +++
  CDO70981.1 377 IVMLGENGTGKTTFVKLLAGDmpDQETE 404
                 6789**************9964433333 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.16        61       4      24 ..     108     128 ..     105     133 .. 0.86
   2 ?   -0.1   0.0       1.9   7.4e+02      94     136 ..     235     279 ..     212     291 .. 0.68
   3 ?    5.1   0.0     0.049        19       3      22 ..     378     397 ..     376     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.16
                 EE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellk 24 
                 + G  G+GK+T +k ++ +lk
  CDO70981.1 108 LVGTNGIGKSTALKILAGKLK 128
                 7899*********99999986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.9
                 HHH-EEEE---ST.TGGG-H.HHHHHHHHHHTTTSEEEEE--SS- CS
    NTPase_1  94 seadviviDEiGk.mElksk.kfkeaveevLksekpvlavihrrk 136
                 ++adv++ DE  + +  k + k +e ++e+L++++ v+av h  +
  CDO70981.1 235 QRADVYMFDEPSSyLDIKQRlKAAEVIRELLTPNNYVIAVEHDLS 279
                 566666666654413433322456789999999999999988765 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.049
                 EEE--TTSSHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlel 22 
                 ++ G+ G+GKtT+vk ++  
  CDO70981.1 378 VMLGENGTGKTTFVKLLAGD 397
                 5679**********988765 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.7      0.46   1.8e+02       2      15 ..      14      30 ..      13      35 .. 0.81
   2 ?   13.0   1.4    0.0003      0.12       4      16 ..      55      67 ..      45      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.46
      Fer4_4  2 erCi..gCgs.CvaaCP 15
                +rC   +C + C  +CP
  CDO70981.1 14 NRCKpkRCAQeCKKSCP 30
                78844499988****** PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0003
      Fer4_4  4 CigCgsCvaaCPq 16
                CigCg Cv  CP+
  CDO70981.1 55 CIGCGICVKKCPF 67
                ************7 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.9   0.00062      0.24      45      58 ..      54      67 ..      35      70 .. 0.78
   2 ?   13.2   1.2   0.00025     0.097       2      17 ..      55      70 ..      54      97 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00062
     Fer4_17 45 lCieCgeCerkCPq 58
                lCi+Cg C++kCP 
  CDO70981.1 54 LCIGCGICVKKCPF 67
                56677777777764 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00025
     Fer4_17  2 CiqCgyClpeCpsyea 17
                Ci+Cg C+++Cp+ ++
  CDO70981.1 55 CIGCGICVKKCPFEAI 70
                8888888888887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 3891.51
//
Query:       CDO70982.1  [L=147]
Description: hypothetical protein BN946_scf184830.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-53  179.3   0.0    3.2e-53  179.1   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
     0.0044   17.3   0.0     0.0051   17.1   0.0    1.2  1  RWD        RWD domain
      0.005   16.5   0.0      0.006   16.3   0.0    1.1  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.035   14.0   0.0      0.052   13.4   0.0    1.3  1  UEV        UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.0   7.2e-57   3.2e-53       1     139 [.       5     141 ..       5     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 7.2e-57
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r++kel +l +++ps++sa+++ d n+f+w+++i+gp+d+pY ggvF l+++fp+dYP+kpPkv+f+tki+HPn++++G++cldiL+++ Wspalt+++
  CDO70982.1   5 RINKELIDLGRDPPSSCSAGPTGD-NMFQWQATIMGPSDSPYSGGVFFLSITFPTDYPFKPPKVSFTTKIYHPNINANGSICLDILRDQ-WSPALTISK 101
                 789********************8.**************************************************************77.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 vllsi+s+l++pnp++pl  ++a+l+k+dr++y+++++e+
  CDO70982.1 102 VLLSICSMLTDPNPDDPLVPDIAHLYKTDRARYEATAREW 141
                 ************************************9986 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-06    0.0051      55     110 ..      50     108 ..      10     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
                 EEEEEEE-SSTTSS--EEEEEECCSS-HHHHHH..HHHHHHHHHHHT.TTS--CHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxx RF
         RWD  55 lkleiklpeeYPeeaPiislsstenlpkeqvks..leekleelaeen.lgepvifalid 110
                 + l i++p +YP ++P++s++++   p+   +   + + l+++++       v+ ++++
  CDO70982.1  50 FFLSITFPTDYPFKPPKVSFTTKIYHPNINANGsiCLDILRDQWSPAlTISKVLLSICS 108
                 6799******************9944433332223666777777766555555555555 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06     0.006      33     107 ..      45     113 ..      25     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
   Prok-E2_B  33 tsggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.e 107
                  sgg++ l + +p ++p+ pp+v+ +        p in  +g +Cl       d+w p+ ++ +vl ++  +L+  
  CDO70982.1  45 YSGGVFFLSITFPTDYPFKPPKVSFTTKI---YHPNINA-NGSICL---DILRDQWSPALTISKVLLSICSMLTdP 113
                 39**********************99877...5788999.9*****...8999************98888887744 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.052      53     117 ..      53     112 ..      43     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
                 EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHH.S--TTT--HHHHHHHHHH---- CS
         UEV  53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLe.eWkreksnlvslvqelaqafee 117
                  i  + +yP+++P v  + +       + n++a+G + l++L+ +W++ + ++++++ +++++ ++
  CDO70982.1  53 SITFPTDYPFKPPKVSFTTKIY-----HPNINANGSICLDILRdQWSP-ALTISKVLLSICSMLTD 112
                 5677899999999987765433.....559************835776.66666665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 974.53
//
Query:       CDO70983.1  [L=408]
Description: hypothetical protein BN946_scf184830.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-108  363.0   0.5   3.3e-108  362.8   0.5    1.0  1  PIG-S     Phosphatidylinositol-glycan biosynthesis class S pr


Domain annotation for each model (and alignments):
>> PIG-S  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.8   0.5  1.8e-112  3.3e-108     182     511 ..      41     388 ..      10     389 .. 0.87

  Alignments for each domain:
  == domain 1  score: 362.8 bits;  conditional E-value: 1.8e-112
       PIG-S 182 s.......krttrsikysptyhLsfsllnedpep....ssWdieaaleeylsplldaLspianftvetqvqyyaplslkpef...eevaavvlskddLs 266
                         ++ +r+ kysp+y+L f+llned+++    ++Wd++ a+++++ pll++Ls ++nft+e+qvq++apl+++p+    ++++   l ++dL 
  CDO70983.1  41 LlapyssaSQAQRVTKYSPRYRLAFTLLNEDAASgtgvMAWDVQGAIRSHIGPLLEKLSDLHNFTIESQVQFHAPLAFEPRLlrhNDTEVHGLAHEDLT 139
                 022333323458**********************99989******************************************986533344558****** PP

       PIG-S 267 sfvnaaEwslsssisssptlnFvvyvPsksespllikdstgeqsk...tnsfliPqWGgvvilnppaeekksegsssaelseeelkevmevFssqLrsL 362
                 +f+n+aEw lsss+s++p+l+Fv+++Ps++++pl+i d++  + +   +n+fl+PqWGg+vi+np++++ +s  ++ ++l++ +l++v+++F++qL++L
  CDO70983.1 140 VFINSAEWTLSSSVSNDPVLHFVLFIPSAKNTPLHILDQQAPTGSihpSNAFLLPQWGGIVIMNPSHKSFTS--TTISRLTVADLSPVFSTFAHQLLTL 236
                 ************************************998855444778*******************99666..5689********************* PP

       PIG-S 363 LGlpsee....kleessspaslpllreweldtlkrrrtlelllsassTLgSLarLveslpnivIpdeVaedVesalellesaldaleegrleealasar 457
                 LG+p       +    +  a+ + +++weld+l+rrr+le+++s+++TL++++rLv++++n++++++V  dV++al++l+ a ++++  +  e+l+++ 
  CDO70983.1 237 LGVPGLPphvrPARRPENDAHREPFTDWELDALLRRRALENVQSSMETLEAIVRLVDQIENMPVGEDVVGDVQDALDALNDAHESSRF-SPVETLKHSA 334
                 ***9655766633333333355667***********************************************************9653.448******* PP

       PIG-S 458 eaealaerAFFdpsmlgqlYFPdEhkvAVYlPLlgPvlvplllgllkelkelkk 511
                 +a +la rAFF+p ml++lYFP Eh +AVY+PL++ v+ pl+ ++++e+ +++k
  CDO70983.1 335 RALTLASRAFFNPGMLALLYFPAEHTYAVYTPLFASVAAPLIGAVIREVVAWRK 388
                 *************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2808.22
//
Query:       CDO70984.1  [L=1492]
Description: hypothetical protein BN946_scf184830.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-17   61.9   0.0    5.6e-08   32.9   0.0    2.7  2  Myb_DNA-binding  Myb-like DNA-binding domain
    3.5e-10   40.0   0.0    0.00075   19.7   0.0    2.7  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    2.3e-08   33.8   0.1     0.0002   21.2   0.0    2.6  2  Myb_DNA-bind_7   Myb DNA-binding like
  ------ inclusion threshold ------
      0.054   13.5   0.0       0.16   12.0   0.0    1.8  1  Nop16            Ribosome biogenesis protein Nop16


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.5e-09   6.7e-06       3      44 ..    1015    1056 ..    1014    1058 .. 0.94
   2 !   32.9   0.0   1.2e-11   5.6e-08       3      43 ..    1259    1299 ..    1258    1302 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.5e-09
                       SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding    3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44  
                        Wt eE  +++e  +++ +++ +Ia+ l+++t+ qc  +++ 
       CDO70984.1 1015 DWTDEEKAIFIEKYAMYPKQFGLIASFLPNKTPAQCVTFYYL 1056
                       6************************************99985 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 1.2e-11
                       SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding    3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwr 43  
                       +W+ e+ el+l+++ +hG+++k+Ia  ++++t  q+ s+++
       CDO70984.1 1259 SWSDEDKELFLKLLSQHGDDFKRIAASMPNKTTVQVTSFYK 1299
                       7***********************************99996 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.7e-07   0.00075       1      36 [.    1016    1051 ..    1016    1062 .. 0.94
   2 !   17.4   0.0   8.7e-07    0.0039       1      39 [.    1260    1298 ..    1260    1318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.7e-07
  Myb_DNA-bind_6    1 WteeEdeiLlklvekygndWknIaealnrRtpkqcf 36  
                      Wt+eE+ i ++ + +y +++ +Ia+ l+++tp qc 
      CDO70984.1 1016 WTDEEKAIFIEKYAMYPKQFGLIASFLPNKTPAQCV 1051
                      ***************************88******7 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 8.7e-07
  Myb_DNA-bind_6    1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrw 39  
                      W++e++e+ lkl +++g+d+k Ia  ++++t  q+   +
      CDO70984.1 1260 WSDEDKELFLKLLSQHGDDFKRIAASMPNKTTVQVTSFY 1298
                      ***************************87*999886655 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00017      0.75       8      44 ..    1013    1049 ..    1006    1059 .. 0.90
   2 !   21.2   0.0   4.4e-08    0.0002       9      50 ..    1258    1299 ..    1250    1312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00017
  Myb_DNA-bind_7    8 tkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrq 44  
                       ++W++ee   F +   ++   F lia+++p++t +q
      CDO70984.1 1013 IDDWTDEEKAIFIEKYAMYPKQFGLIASFLPNKTPAQ 1049
                      579*******************************988 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 4.4e-08
  Myb_DNA-bind_7    9 kkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFk 50  
                       +Ws+e+ e+F k Lsq G DF+ ia+ +p++t  q+ + +k
      CDO70984.1 1258 ASWSDEDKELFLKLLSQHGDDFKRIAASMPNKTTVQVTSFYK 1299
                      68*********************************9988777 PP

>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.6e-05      0.16     120     187 ..    1214    1283 ..    1147    1288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
       Nop16  120 ledpleeleedeekeeeee..................kkkktevvkeLekeaarekakkerhlsereeewlerLvekhGdDyeaMa 187 
                  ++                +                   + +t ++++ e  a++++       s++++e   +L+ +hGdD+++ a
  CDO70984.1 1214 SK----------------AgdsetvsstpaaedtaavASGETMFIDQTEMTARKKAGGSGASWSDEDKELFLKLLSQHGDDFKRIA 1283
                  22................133333333444444445677889************9***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 9283.22
//
Query:       CDO70985.1  [L=89]
Description: hypothetical protein BN946_scf184830.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-05   24.8   1.7    3.4e-05   24.4   0.6    1.8  1  Rotamase_3  PPIC-type PPIASE domain
  ------ inclusion threshold ------
      0.017   16.1   0.7      0.017   16.1   0.7    2.0  2  Rotamase    PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.6   3.8e-09   3.4e-05      11      65 ..      41      84 ..      30      89 .] 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.8e-09
  Rotamase_3 11 sakdsvkvshIlistkgkesrseeeakakadsllaalkegadFaalAkeySdDpa 65
                + + sv+v+hIl +            ++ka + l++++eg+ F ++A+eyS+D+a
  CDO70985.1 41 KPATSVNVRHILCEK-----------QSKALEALQKIQEGQRFDKVAQEYSEDKA 84
                444599999999964...........6799999********************98 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.6      0.15   1.4e+03      39      54 ..      19      34 ..       2      50 .. 0.53
   2 ?   16.1   0.7   1.9e-06     0.017      19      49 ..      56      85 ..      39      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
                HHCCC-.-CHHHCCTT CS
    Rotamase 39 lArkySddknsakngG 54
                + + +++ ++s +++G
  CDO70985.1 19 AGKSNAKTEESDNKKG 34
                2233333333333333 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.9e-06
                HHHHHHHHCCTCCCHHHHHHHHCCC-.-CHH CS
    Rotamase 19 kakaeeileqlksgedtFeelArkySddkns 49
                + ka e l+++++g++ F+++A++yS+dk++
  CDO70985.1 56 QSKALEALQKIQEGQR-FDKVAQEYSEDKAK 85
                6789999*******99.*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 622.40
//
Query:       CDO70986.1  [L=540]
Description: hypothetical protein BN946_scf184830.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-24   85.5   0.0    3.6e-23   81.8   0.0    2.0  1  AMP-binding  AMP-binding enzyme
     0.0045   15.9   0.0     0.0085   15.0   0.0    1.4  1  GH3          GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   4.1e-27   3.6e-23      23     422 ..      41     423 ..      30     424 .. 0.75

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 4.1e-27
                  EEHHHHHHHHHHH....HHHHHHTTSSTT-EEEEEES.SSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHH.HHHHHTESEEEETCTCCCHHHHHHHH CS
  AMP-binding  23 lTYreldervnrl....AagLrslGvkkgdrVaillp.nspewvvallailkaGavvvplnptltaeelay.iledseakvliatvdselleklleaa 114
                  ++Y+e++++v+ +    A+ L+++G+ + +++++++  +s+  v+ +++i++aG ++   + +l+++++ y +l+ ++ak++i  ++  l + +l++ 
   CDO70986.1  41 ISYAEFQSHVQHFathiASRLQAKGIAPRSVIGLWSNgMSYVDVLYIYGIARAGYIPQLFSLRLPNPDVVYeLLKRANAKAII--YEPFL-ADVLSNC 135
                  799999999887611115678888***********96366777999********************999986899********..65444.5555555 PP

                  SCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SS.SS-EEEEEEHHHHHHHHHHHH.HHHC.SCCTTT-EEEESS CS
  AMP-binding 115 akleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTT.GkPKGVmlshrnlvanvaslk.letr.fklkeddvvlsil 209
                  +++    +   +d  +++          +++    p+ +e+++p+d+a+i+ TSG+T G+PK      + l ++va+ + +++  +k + +dv +++ 
   CDO70986.1 136 PYP----AFGAVDLRDIDVG--------QASL---PPMPEPASPKDIAVIFHTSGSTsGQPKLLPCDFKWLDNMVAKSAtVSRPlRK-TGQDVTVAMG 217
                  544....3445554333322........2222...446779**************9989******9998777777765443322233.469******* PP

                  -TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH.CHHHHCCGTT-SEEEEESS-EBHHHHHHHHHH CS
  AMP-binding 210 plahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalk.aakkakdlsslrlvllggeplspellrffral 306
                  +++hi +  +  l+++ +Ga+ + ++  ++ + + l+ +i++ + + ++  P+++   +++ + + +  +   l sl  +l  g+++++e  ++++a 
   CDO70986.1 218 SMCHIGQT-FMFLASFQNGACTIQPRAVTF-PTDELVSMITQGGLNRLNQFPAFFAVHARAARMNpKVLA--LLRSLDEILYSGQAMPREDEEWAYAN 311
                  *******6.99*********8888776666.445789*******************99885444433222..67779999***************999 PP

                  HTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-....HHHHHHHEEETCCEEEEEE CS
  AMP-binding 307 fgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkk....peataeafdsegrwlrTGD 400
                    + + +++G TE+++++  ++  ++   ++ + +p+ g+ ++ +  ++g   + + +G   v    +    l +    p a  +a d   + ++TGD
   CDO70986.1 312 NLQ-LRNLFGSTECGAMLLSVRGGGQ---PSPALRPIEGTAYAFMPIKDGSD-ESEGSGYANVNARLLELVVLAEsgdcPHASMRAAD---GHYHTGD 401
                  876.*************965665555...34467888888888887774443.44556777777777777777663333444444443...6999999 PP

                  EEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 401 lgrldedGyleivgRkkdlikl 422
                  l +  + G +   gR +d ik+
   CDO70986.1 402 LFVEVAPGAYVNRGRGDDWIKS 423
                  9996668999999999999985 PP

>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.5e-07    0.0085      73     116 ..     164     207 ..     159     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.5e-07
                 SSS-SEEEEECCEETTEEEEEEESHHHHHHHHHH.HHHHHHHHH CS
         GH3  73 sepiklfalsSGTtsgksKliPvteeslkelallvlallaalls 116
                 ++ i  ++ +SG+tsg++Kl+P   ++l+++    ++++ +l++
  CDO70986.1 164 PKDIAVIFHTSGSTSGQPKLLPCDFKWLDNMVAKSATVSRPLRK 207
                 788999************************77666777777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3698.75
//
Query:       CDO70987.1  [L=378]
Description: hypothetical protein BN946_scf184830.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2949.29
//
Query:       CDO70988.1  [L=233]
Description: hypothetical protein BN946_scf184830.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-70  237.5   0.0    1.5e-70  237.3   0.0    1.0  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.5e-05   24.9   0.0    2.2e-05   24.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    0.00022   21.1   0.0    0.00026   20.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    0.00026   21.0   0.0    0.00039   20.4   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
    0.00039   21.1   0.0    0.00083   20.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0044   17.6   0.0      0.009   16.6   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.026   14.1   0.0       0.04   13.5   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
       0.03   15.3   0.0       0.21   12.6   0.0    2.1  2  Methyltransf_24  Methyltransferase domain
       0.16   11.5   0.0       0.27   10.7   0.0    1.3  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3   0.0   7.3e-74   1.5e-70       2     209 ..       9     228 ..       8     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 237.3 bits;  conditional E-value: 7.3e-74
                 HHHHHHHHHHHTTS---HHHHHHHHHS-GGGGSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT..--TT-EEEEES-TTSHHHHHHHHHHCTT CS
        PCMT   2 kkealieelkkkgviksdkvaealeevdReefvpesfkekaYedaplsigynatiSaphmvalalelle..lkkgarvLevGsGsGyltavlarlvgek 98 
                 ++ +li ++ k g+i+s++va a++evdR+++v   f+++aYed+p++ig +atiSaphm+a a e+l   lk+garvL+vGsGsGyl avl++l+++ 
  CDO70988.1   9 TNAELIGNMAKAGIITSERVAAAMAEVDRANYVR--FPDSAYEDSPQPIGHGATISAPHMHAHAAEHLLpfLKPGARVLDVGSGSGYLCAVLYQLLQDP 105
                 5789****************************96..599***************************99889*************************987 PP

                 C.......EEEEEESBHHHHHHHHHHHHHCTTC......SEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESBSSSEEEEEE CS
        PCMT  99 g.......rvvsierikelveeakrnlkkldle......nvivvvgDGrkGyeekaPYdaihvgaaapeiPealidQLkeGGrlvvPvgeeeeQvlklv 184
                         +vv+ie+i+el+e + +nl+k++l       ++ ++ gDGrkG++e aPYdaihvgaaap +P+ l++QL+  Gr+ +Pvg ++ Q++++v
  CDO70988.1 106 SdpkskesKVVGIEHIPELTEWSIENLRKDGLGpaladgSIRMISGDGRKGVPEDAPYDAIHVGAAAPTMPQDLVEQLARPGRMFIPVG-TYAQQIFQV 203
                 67777777***********************99999*****************************************************.********* PP

                 EEETTTEEEEEEEEEE---B-BCCC CS
        PCMT 185 dkkadgkvvikkleevrfvpltdke 209
                 dk+adg+v++k l +v++vpltd+ 
  CDO70988.1 204 DKDADGNVTQKPLLDVMYVPLTDRD 228
                 **********************986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.1e-08   2.2e-05       2      54 ..      79     138 ..      78     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.1e-08
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelae..elgp.......kaevvGiDiseeaielArenaqklgld 54 
                      + g rvlD+G+G+G+l+ +l++  +  +       +++vvGi+  +e  e + en++k gl 
       CDO70988.1  79 KPGARVLDVGSGSGYLCAVLYQllQ--DpsdpkskESKVVGIEHIPELTEWSIENLRKDGLG 138
                      56889****************9551..32333233555*******************99986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00026      13      59 ..      71     127 ..      63     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlre..........ngfsvtgvDlspeavei 59 
                       e llp l++g+rvLd+G G+G+l+ vl +          +  +v+g++  pe+ e+
       CDO70988.1  71 AEHLLPFLKPGARVLDVGSGSGYLCAVLYQllqdpsdpksKESKVVGIEHIPELTEW 127
                      56788899********************77566666554333488888877776665 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     2e-07   0.00039      27      68 ..      82     129 ..      68     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2e-07
  Methyltransf_32  27 ltvvDvGaGkgYLsfvlal......kekeyklkvvgidakeelvekae 68 
                       +v+DvG+G gYL  vl++      + k ++ kvvgi+   el+e + 
       CDO70988.1  82 ARVLDVGSGSGYLCAVLYQllqdpsDPKSKESKVVGIEHIPELTEWSI 129
                      689****************998664333599*******9999998665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.2e-07   0.00083       1      86 [.      84     183 ..      84     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.2e-07
                      EEEET-TTSHHHHHHHCTS......T..SSEEEEEESSHHHHHHHHHHHHHTTT.......TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSS CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl......g..kakvtgvDiseemleaareraeeegl.......nvefvqgdaedlpfedgsfDlvvssga.lhhls 78 
                      vLd+G G+G l++ l + l      +  ++kv+g++  +e+ e   e+++++gl       +++++ gd ++   ed+ +D++++ ga    ++
       CDO70988.1  84 VLDVGSGSGYLCAVLYQLLqdpsdpKskESKVVGIEHIPELTEWSIENLRKDGLgpaladgSIRMISGDGRKGVPEDAPYDAIHV-GAaAPTMP 176
                      9***********99999977766651569**********************8888899999**********9888999******9.55344444 PP

                      HHHHHHHH CS
  Methyltransf_25  79 dedlekal 86 
                       +dl + l
       CDO70988.1 177 -QDLVEQL 183
                      .4544444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.5e-06     0.009       1      82 [.      85     184 ..      85     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.5e-06
                      EEET-TTSHHHHHHH.......HTT....SEEEEEES-HHHHHHHHHHCCHHT-.......EEEETTEECCCTSS-TT-EEEEEEES-CCC-.C CS
  Methyltransf_11   1 LdvGcGtGrlaeala.......krg....arvvgvDlskemlklakekaseegl.......kvefvvadaeklpfednsfDlvvssevlhhv.e 75 
                      LdvG+G+G+l++ l        +      ++vvg++  +e+++++ e+ +++gl       +++++ +d +k   ed+ +D++ +  +  ++ +
       CDO70988.1  85 LDVGSGSGYLCAVLYqllqdpsD-PkskeSKVVGIEHIPELTEWSIENLRKDGLgpaladgSIRMISGDGRKGVPEDAPYDAIHVGAAAPTMpQ 177
                      8**************77665551.15678************************999*****99********9655999****999998888865 PP

                      CHHHHHH CS
  Methyltransf_11  76 dpekalk 82 
                      d+ + l+
       CDO70988.1 178 DLVEQLA 184
                      5555444 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05      0.04       7      33 ..      74     100 ..      69     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
        MetW   7 iaelikpgsrvldlGcGdGellellke 33 
                 ++ ++kpg+rvld+G+G G l  +l +
  CDO70988.1  74 LLPFLKPGARVLDVGSGSGYLCAVLYQ 100
                 567899*************99888754 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.62   1.2e+03      84     101 ..      67      84 ..      21      86 .. 0.82
   2 ?   12.6   0.0    0.0001      0.21       2      75 ..      86     168 ..      85     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.62
  Methyltransf_24  84 vledleallprlapggvv 101
                       +++ e+llp l+pg+ v
       CDO70988.1  67 HAHAAEHLLPFLKPGARV 84 
                      456678999999999866 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.0001
  Methyltransf_24   2 EiGvysGvstlwllralrrnga.....grlvavdhdpg..aeeaaalare.....aglddrvrlikadseealaslaagsiDllfi 75 
                       +G+ sG+  ++l ++l++  +     +++v ++h p+  ++   +++r+     a  d  +r+i++d ++ +++ a  ++D +++
       CDO70988.1  86 DVGSGSGYLCAVLYQLLQDPSDpkskeSKVVGIEHIPEltEW-SIENLRKdglgpALADGSIRMISGDGRKGVPEDA--PYDAIHV 168
                      68999**************9999************9964322.233444456665666667********99999988..8999988 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.27      20      53 ..      71     102 ..      63     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
                 HHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHT CS
         MTS  20 sklLletlpkelsgkvlDlGcGaGvlgaalakes 53 
                 ++ Ll  l+     +vlD+G+G G+l a+l +  
  CDO70988.1  71 AEHLLPFLKP--GARVLDVGSGSGYLCAVLYQLL 102
                 5566777766..678*************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1687.85
//
Query:       CDO70989.1  [L=331]
Description: hypothetical protein BN946_scf184830.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-43  143.6  13.2    3.8e-09   36.0   1.0    5.4  5  PPTA      Protein prenyltransferase alpha subunit repeat


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   3.3e-11     6e-07       2      24 ..      56      78 ..      56      80 .. 0.93
   2 !   23.9   0.1   1.4e-09   2.5e-05       2      27 ..      91     116 ..      90     117 .. 0.92
   3 !   36.0   1.0   2.1e-13   3.8e-09       1      27 [.     127     153 ..     127     154 .. 0.96
   4 !   31.8   0.1   4.3e-12   7.7e-08       4      27 ..     168     191 ..     165     192 .. 0.93
   5 !   28.1   0.0   6.2e-11   1.1e-06       1      27 [.     209     235 ..     209     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.3e-11
                HHHHHHHHHH-TT-CHHHHHHHH CS
        PPTA  2 LeltekliekdpkNYsaWnyRrw 24
                L+lte +i+++p +Y+aW++R+ 
  CDO70989.1 56 LKLTERIIRMNPAHYTAWQHRYK 78
                89*******************85 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   2 LeltekliekdpkNYsaWnyRrwlle 27 
                 L l +++++++ k Y++W++Rr ll+
  CDO70989.1  91 LRLMDDIAKDFMKTYQVWHHRRLLLT 116
                 778999******************96 PP

  == domain 3  score: 36.0 bits;  conditional E-value: 2.1e-13
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 ELe+  +++++d kNY++W+yR+w+l 
  CDO70989.1 127 ELEFLRDVLDLDTKNYHTWSYRQWILA 153
                 9************************96 PP

  == domain 4  score: 31.8 bits;  conditional E-value: 4.3e-12
                 HHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   4 ltekliekdpkNYsaWnyRrwlle 27 
                 +te+li+ d +N+saW++R++++ 
  CDO70989.1 168 YTEELIDADVRNNSAWHHRFFVVF 191
                 9*********************96 PP

  == domain 5  score: 28.1 bits;  conditional E-value: 6.2e-11
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 EL + +++i + p N saWny r++le
  CDO70989.1 209 ELSYAKEKIALAPNNPSAWNYLRGVLE 235
                 9************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2311.40
//
Query:       CDO70990.1  [L=218]
Description: hypothetical protein BN946_scf184830.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-14   53.0   0.0    3.3e-14   52.4   0.0    1.3  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    2.3e-08   34.5   0.1    2.3e-08   34.5   0.1    2.6  3  FoP_duplication  C-terminal duplication domain of Friend of P
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.016   15.0   0.0    1.3  1  RRM_occluded     Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   5.6e-18   3.3e-14       1      68 [.      66     134 ..      66     136 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 5.6e-18
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 ++V+nLppdv+e ++kelF   +Gp k+++l +d++g+skg+a V F+ + d +kA +++n++ ++g++
  CDO70990.1  66 IIVSNLPPDVNELQVKELFHTtVGPLKEVTLHYDSQGRSKGVAAVHFQRRGDGTKAYQQYNNRLIDGKR 134
                 78****************************************************************986 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.6      0.14   8.7e+02      24      37 ..      17      30 ..       9      62 .. 0.50
   2 ?   -2.3   0.3       1.2   6.9e+03      34      35 ..     114     115 ..      99     133 .. 0.47
   3 !   34.5   0.1   3.9e-12   2.3e-08      24      65 ..     170     209 ..     157     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
  FoP_duplication 24 grggrggrgrgrgg 37
                      r+ + +r+ g+ +
       CDO70990.1 17 IRRSNPRRNSGKAQ 30
                     22222222222222 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
  FoP_duplication  34 gr 35 
                       r
       CDO70990.1 114 RR 115
                      11 PP

  == domain 3  score: 34.5 bits;  conditional E-value: 3.9e-12
  FoP_duplication  24 grggrggrgrgrggrggrkkkkpltkeeLDaeLDaYmgkktk 65 
                      + ggr +rgrg g+r  r++++++t+e+LDae+++Y + +t+
       CDO70990.1 170 RTGGRPRRGRGGGRRP-RNERPKKTAEDLDAEMEDYTA-STA 209
                      3344444444444444.589****************99.654 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.7e-06     0.016       4      66 ..      66     133 ..      63     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
  RRM_occluded   4 isllplsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegk 66 
                   i + +l+  vn+ ++++l++++ g++k++ L+ d +G     A v f+ + +  ka  + ++  ++gk
    CDO70990.1  66 IIVSNLPPDVNELQVKELFHTTVGPLKEVTLHYDSQGrskgvAAVHFQRRGDGTKAYQQYNNRLIDGK 133
                   66889*****************************9997777788888888888888777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1472.01
//
Query:       CDO70991.1  [L=221]
Description: hypothetical protein BN946_scf184830.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-27   95.1   6.1    1.1e-26   94.6   6.1    1.2  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3


Domain annotation for each model (and alignments):
>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   6.1   5.9e-31   1.1e-26       5     226 .]      10     200 ..       6     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 5.9e-31
  RNA_pol_3_Rpc31   5 rgrgg......grsgnleelpwglg.eelgeepdtapselfPpl.slpvakplteeersqvslyrklreqihdgpfytqkrtkkslsaeekesk 90 
                      rg+g+      g+ g++++ p+gl   +  ++++ ++sel+Ppl +lp   + +eeer+ ++l + ++ +++  ++y ++ tk+          
       CDO70991.1  10 RGGGRggfggrGGFGGGNAPPMGLTfAD-IQSLSREESELYPPLePLPLLTEYSEEERRIAELQIGFATRLRHTAYYLVEPTKS---------- 92 
                      3333333557644455555566655544.3455566*****************************************4444444.......... PP

  RNA_pol_3_Rpc31  91 kgakekatfdpftgierYsdkylkkertlpklderpyvkefFPkELwptlkdgkdekkeikgkskkkkeadeedeegkelleklkelaeeedde 184
                                  t  +rYsdky+      p+l+ +  ++ fFP+E  + + +          + kkkk++ +++  +k++   l+e+ e+++  
       CDO70991.1  93 ------------TELPRYSDKYRPSPASQPTLKRKDLHQPFFPQEIFEEYFN----------P-KKKKSTVRKKGITKRI--NLDEMVEDGEG- 160
                      ............349**********************************952..........2.3444333333333333..44444444444. PP

  RNA_pol_3_Rpc31 185 eekkekedeeeee..eeeeddefddddedggDYNaekYFDnGdd 226
                         +ek de+  e   ++ ++++d ++e ++DY ae+YFDnG++
       CDO70991.1 161 ---QEKSDEDRSEigSQQGEEDYDVEEEYDNDY-AENYFDNGEG 200
                      ...344444444457788999***99977****.********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1588.79
//
Query:       CDO70992.1  [L=297]
Description: hypothetical protein BN946_scf184830.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    9.4   1.4        0.3    9.1   1.4    1.1  1  AF-4       AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.4   1.7e-05       0.3     456     532 ..     169     254 ..     141     284 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 1.7e-05
        AF-4 456 qstpes...........vesahsssaeSeSsSeSeSSSeSDSesEssssdseanepprtatpepeppatnkWqLdnwlnkvnqlassq 532
                   +++s           v+ ah ++++S+Ss +S S  + +S s s  s s  n  p t+  + + p++ k  +  +l++ + + s  
  CDO70992.1 169 DRRRSSsriyprglsdaVNVAH-NNKNSGSSFGSSSGAGTNSGSGS-GSGSGRNSVPSTRVKDVSDPSSSKILVPVFLKRAQDVKSGL 254
                 3333333444555555355555.55677887777777777777766.899**********9999999999988888888887666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2079.30
//
Query:       CDO70993.1  [L=486]
Description: hypothetical protein BN946_scf184830.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-65  221.8   0.0    3.1e-65  220.7   0.0    1.4  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.7   0.0   1.7e-69   3.1e-65      21     439 ..       5     451 ..       1     460 [. 0.90

  Alignments for each domain:
  == domain 1  score: 220.7 bits;  conditional E-value: 1.7e-69
                 CHHHHHHHHHHHH-SEEEEEETT.EEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHH CS
        p450  21 elhevlrklqkkygpifrlklgs.kpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleel 117
                 +  +++ +l +kygp+++l+  + +++ ++ +p a++++ +k++ +++   +++++ +s+  ++g g+l + g++++k+Rr+l+p +  +  +  + ++
  CDO70993.1   5 QGTQFIYDLIEKYGPVVKLQGAHgRKILYVFDPRAMHSIVVKDQ-YSYE--QPNWFIKSNLLTLGPGLLSTLGDHHRKQRRMLNPVFSIN-HMrHMIPM 99 
                 5567889999**********98779******************5.6666..6888888899****************************9.6669**** PP

                 HHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.....HHHHHHHHHHHHHHHHCHHHHCCCC......CH..HHTCCS CS
        p450 118 veeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledek.....lselvkaveelssllskssvqllll......fp..llkylp 202
                 + +++++l +++++++ ++  e+d+ +++ +aal+ ig+  +g++fd l+++      ++ ++++v +l++l  ++++ ++ +      f+  ++++lp
  CDO70993.1 100 FYDVGHKLRAAIEERVRTAPaEIDMLNWMGRAALELIGQAGLGHSFDPLKEDVtpdvyAEAIKAYVPALYDLSVFRWTLPYVVrigtsaFRrrVIRWLP 198
                 ***************999999**************************999998999987778888888888776677666643222222233699**** PP

                 CHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.......SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH CS
        p450 203 tkllrklkeavkklkdlldklieerretldsa.......kksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknP 293
                  + l++l+++v++++  + ++  e+++ l++          + rd +++ll+a  +++ ++  ls+eel  ++ +++fa++dTts+ ls +L+ La++P
  CDO70993.1 199 MQRLHRLQDVVDTMHRRATEIYLEKKARLEEGdeallqqVGEGRDIMSILLKANmQASVED-RLSEEELIGQMVTMTFAAMDTTSNMLSQILHILAQRP 296
                 *************************************996689**********97777776.9************************************ PP

                 HHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET......T........EEE-TT-EEEEEHHHHHT-TTTS. CS
        p450 294 evqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir......g........ylipkGtevivnlyalhrdpevf. 377
                 ++qe+lr E++e++++++ + yd+l +lpyldav++EtLRlhp++  ++ Re+ +d+v++      g          ipkGt+v+v + + +++++++ 
  CDO70993.1 297 DAQERLRAEVREAIHGNQDIIYDELVSLPYLDAVCRETLRLHPPAT-FIFREAQRDMVLPlsqpieGvdgslmseIPIPKGTVVQVGIMGSNMSKKLWg 394
                 **************99999***************************.********9997544334323347777799********************** PP

                 SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 378 pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqp 439
                 +++ e +peR+l +    +    a++P   G+ + +G ++A++e+k++la+lL+nF++el +
  CDO70993.1 395 EDAYEWKPERWLTKLP--EAVTAAHIP---GVYSNLGFKFAQLEMKVVLALLLSNFKFELSD 451
                 **************65..489******...*****************************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3250.83
//
Query:       CDO70994.1  [L=245]
Description: hypothetical protein BN946_scf184830.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-19   70.2   0.0    4.7e-13   49.0   0.0    2.2  2  adh_short     short chain dehydrogenase
    2.4e-14   53.4   0.0    4.7e-10   39.4   0.0    2.1  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   5.2e-17   4.7e-13      31     124 ..      19     109 ..      10     112 .. 0.85
   2 !   19.5   0.0   5.8e-08   0.00052     150     185 ..     112     147 ..     109     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 5.2e-17
                 ESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHH.HHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
   adh_short  31 drseekleevakelkeegakalaiqvDvtdreev.ealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpaml 124
                 +rs ekl    +++   g+++  +q+Dvtd +e+ +a v++av ++g +dvLvnNAG  +++ ++e  +   ++ ++v +++v+ +t avlp+m 
  CDO70994.1  19 ARSLEKL----QSFSTYGDQVQLLQLDVTDGSECvKAKVKEAVHHFGCIDVLVNNAGTGEKSLIEEGGSGILRKQFDVSFFAVVDVTNAVLPHMR 109
                 4444444....555556899*********877751667*******************************************************96 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 5.8e-08
                 HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short 150 sAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                 +AsKaa++ l+++l  el p gir  +v PG+++T+
  CDO70994.1 112 AASKAALRVLAETLNVELTPFGIRSLIVEPGGFRTN 147
                 8*********************************97 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   5.2e-14   4.7e-10      28     120 ..      19     111 ..      10     113 .. 0.83
   2 !   13.0   0.0   6.1e-06     0.054     142     179 ..     112     149 ..     109     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 5.2e-14
                   GGHHHHHHHHHHHTTSEE..EE--TTSHHH.HHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC CS
  adh_short_C2  28 eeakkrveelaeelgaev..lecDVtdeeq.vealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg 120
                    ++ ++++++ + +g +v  l++DVtd ++ v+a v+e+v++fg +D+lvnnag  +k  + ++e     +++ +dv++ +++ +++a+lp+m+++
    CDO70994.1  19 ARSLEKLQSFST-YGDQVqlLQLDVTDGSEcVKAKVKEAVHHFGCIDVLVNNAGTGEK--SLIEEGGSGILRKQFDVSFFAVVDVTNAVLPHMRPH 111
                   444566777766.4555445*******87747888***********************..99999999*************************976 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.1e-06
                   HHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2 142 gaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   +a+Kaal  l+ +l vel p giR   v pg  +T++ 
    CDO70994.1 112 AASKAALRVLAETLNVELTPFGIRSLIVEPGGFRTNSL 149
                   79********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1723.64
//
Query:       CDO70995.1  [L=283]
Description: hypothetical protein BN946_scf184830.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-31  107.4   0.0    3.4e-30  105.0   0.0    2.1  2  adh_short       short chain dehydrogenase
    1.9e-18   66.9   0.0    3.6e-18   66.0   0.0    1.4  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    0.00036   20.5   0.0    0.00065   19.6   0.0    1.5  1  NAD_binding_10  NAD(P)H-binding
     0.0053   16.7   0.0     0.0092   15.9   0.0    1.3  1  KR              KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   7.6e-34   3.4e-30       4     186 ..      11     186 ..       8     193 .. 0.91
   2 ?   -2.2   0.0      0.51   2.3e+03      59      86 ..     224     251 ..     200     277 .. 0.51

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 7.6e-34
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvt.dreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 +vtG ssG+Gr+++++ ak+G +v++++rs +++    +e+   g+++ ++q+Dvt   ++++a v++a+  +g++dvLvnNAGit ++  +e  ++ +
  CDO70995.1  11 FVTGTSSGFGRELVHAAAKRGDRVIATARSVDRI----SEFPY-GDQVRTLQLDVTsGFANIKAKVDEAATYFGRIDVLVNNAGITVKSLLEEGGSDVF 104
                 7*****************************9988....77775.899*********889**************************9999999999999* PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 ++ ++vN++g++ +t avlp+m +++sG++v ++S ++   +v+ +   +       +l ++l +el p gir  +v PG+++T++
  CDO70995.1 105 RKQFDVNFFGLIDTTNAVLPHMRARRSGTVVHIGSRTSwATEVPRYQGWC----NHPALGETLNEELTPFGIRSLIVEPGGFRTNT 186
                 ************************************99555555555555....4678999*********************9987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.51
                 TSHHHHHHHHHHHHHHHSSESEEEE--- CS
   adh_short  59 tdreevealvekavkklgkldvLvnNAG 86 
                 + +e + ++v+   k +gkl+ L+   G
  CDO70995.1 224 KAMELLVDVVRGEGKAVGKLWTLYLPMG 251
                 4455555666666666777777744443 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   8.1e-22   3.6e-18       1     179 [.      14     187 ..      14     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 8.1e-22
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSH.HHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtde.eqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   G  sg Gr++++a+a++G +v++t ++ ++   + e+    + + l++DVt+  ++++a v+e++  fg++D+lvnnagi+ k  + ++e   + f+
    CDO70995.1  14 GTSSGFGRELVHAAAKRGDRVIATARSVDR---ISEFPYGDQVRTLQLDVTSGfANIKAKVDEAATYFGRIDVLVNNAGITVK--SLLEEGGSDVFR 105
                   6789*********************99998...999987655667******96388***************************..999999****** PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   + +dvn+ +l+ +++a+lp+m+++  g +v++ s  +  + vp y+  +       al  +l  el p giR   v pg  +T+  
    CDO70995.1 106 KQFDVNFFGLIDTTNAVLPHMRARrsGTVVHIGSRTSWATeVPRYQGWCNH----PALGETLNEELTPFGIRSLIVEPGGFRTNTL 187
                   *******************9987778******9987655547887755443....5677788899999999999999999998764 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.5e-07   0.00065       3      59 ..      16      72 ..      14     168 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.5e-07
                    TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-C.CHHHHHHT CS
  NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdv.edlaealk 59
                    + + Gr+lv+ +++rg  +v a +R+ ++++e++  ++++++++dvt+  + +++ ++
      CDO70995.1 16 SSGFGRELVHAAAKRG-DRVIATARSVDRISEFPYGDQVRTLQLDVTSGfANIKAKVD 72
                    5578***********6.9****************99**********983234443333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-06    0.0092       3     110 ..      10     109 ..       9     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-.HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsd.kdavealleeikaeeppikGvihaAgvlrdklleem 100
                  ++tG   g+G+el++  a++g r ++ ++Rs  +     ++i+e+  +g +v+++++Dv++  ++++a ++e+ + +++i   ++ Ag++ ++llee 
  CDO70995.1  10 WFVTGTSSGFGRELVHAAAKRGDR-VIATARS--V-----DRISEFP-YGDQVRTLQLDVTSgFANIKAKVDEAATYFGRIDVLVNNAGITVKSLLEEG 99 
                 579******************987.6678999..2.....3455554.699*********9835889999*****999*******************99 PP

                 -HHHHHHHHT CS
          KR 101 taedleqvla 110
                  ++ +++ + 
  CDO70995.1 100 GSDVFRKQFD 109
                 9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1934.44
//
Query:       CDO70996.1  [L=767]
Description: hypothetical protein BN946_scf184830.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5197.61
//
Query:       CDO70997.1  [L=387]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-37  128.9   0.0    2.9e-37  128.4   0.0    1.2  1  GMC_oxred_C  GMC oxidoreductase
    7.9e-09   35.3   0.0     0.0017   17.8   0.0    2.3  2  GMC_oxred_N  GMC oxidoreductase
  ------ inclusion threshold ------
      0.022   14.7   0.8      0.035   14.0   0.2    1.6  2  TMEM213      TMEM213 family


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   4.8e-41   2.9e-37       1     144 []     235     374 ..     235     374 .. 0.93

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 4.8e-41
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-S CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGa 98 
                  P+s G+v+l+ s+p++ p +d+++l++p+d+  l +++k   ++++++     +++ +p ++  +   +  +d  l++f++++  t +H ++tcrMGa
   CDO70997.1 235 PKSHGSVRLATSNPRARPEVDLGFLTNPEDMVPLKKGIKFGLRLAEDM-----RKQGYPLKNLIV--PEDLDDSSLDNFIRQNLRTCYHYTSTCRMGA 325
                  89**********************************************.....577777775555..4777777889********************9 PP

                  TCGC...BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  99 dpkd...sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +++    +VVD++lrvhgv++LrV+DaSvfP+++ga+++++++++Aek+
   CDO70997.1 326 EADLlnpGVVDAELRVHGVQGLRVCDASVFPEIVGAHTMAPVVMVAEKC 374
                  9998999****************************************95 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-06    0.0085     155     236 ..       3      93 ..       1      96 [. 0.78
   2 !   17.8   0.0   2.8e-07    0.0017     267     295 ..      97     126 ..      94     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
  GMC_oxred_N 155 allkaaeelGlpvprdlngkhqcGvcllgv..tcr.tgarqstarawLrpal...erpnleiltgakaekiil...egrkkravGVeasdk 236
                   l++aae  G++  +d+n+    G + + +  t++ + +r +t +a+L+  l   ++  l+i t+a a+++ +   e  + ra+GV ++ +
   CDO70997.1   3 SLIRAAEHTGIQPIDDINSPTAPGAGYVRQdvTQDsKRRRHGTFHAFLPASLvreRKARLKICTNALATRLEFdldESGGLRATGVHFEAT 93 
                  589*********77888888666555555442544156788********99855334479***********9999988999*****99876 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.8e-07
  GMC_oxred_N 267 GlGkaehLkevgvdvvvdlp.vGknLqdHp 295
                  GlG+++hL+ +g+ vv ++p +G+ LqdH 
   CDO70997.1  97 GLGPRSHLETMGIPVVREMPgIGNYLQDHA 126
                  9****************************6 PP

>> TMEM213  TMEM213 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   5.9e-06     0.035       4      40 ..     185     221 ..     182     231 .. 0.85
   2 ?   -4.0   0.0       2.6   1.6e+04      26      39 ..     312     325 ..     301     327 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
     TMEM213   4 snssavtakepdpgtleqcpdvdfcpkaarcckaGvd 40 
                  n s+  +++ d+g ++ c+d++f p+a +c  + + 
  CDO70997.1 185 ANLSTADKQDLDSGDVANCADLEFMPEANNCTDHVIP 221
                 567788899**********************988665 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.6
     TMEM213  26 dfcpkaarcckaGv 39 
                   c + +  c++G 
  CDO70997.1 312 RTCYHYTSTCRMGA 325
                 55777788888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2904.61
//
Query:       CDO70998.1  [L=724]
Description: hypothetical protein BN946_scf184844.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-38  129.1   1.1    5.6e-19   68.0   0.0    2.3  2  TFIIB         Transcription factor TFIIB repeat
    2.3e-29  101.7  14.2    1.1e-28   99.5   4.9    2.6  2  BRF1          Brf1-like TBP-binding domain
      2e-08   33.6   5.1    4.5e-08   32.5   5.1    1.6  1  TF_Zn_Ribbon  TFIIB zinc-binding
    2.7e-06   27.1   1.2      0.016   15.0   0.4    2.4  2  Cyclin_N      Cyclin, N-terminal domain
  ------ inclusion threshold ------
      0.025   14.6   0.3      0.051   13.6   0.3    1.5  1  DZR           Double zinc ribbon


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.2   5.2e-20   1.9e-16       1      70 [.     106     176 ..     106     177 .. 0.94
   2 !   68.0   0.0   1.6e-22   5.6e-19       1      71 []     201     274 ..     201     274 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 5.2e-20
                 HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS-.-HHHHHHHSS--SHH CS
       TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkr.tqkeissvlqVsekt 70 
                 i+++a al L+e Va aA+ l+ la+e k++kGr++ +++A cly+Acr++e++  +++++s++lqV++ +
  CDO70998.1 106 IQQVATALRLSEVVALAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNyMLIDFSDLLQVNVFE 176
                 899***********************************************9997549**********8765 PP

  == domain 2  score: 68.0 bits;  conditional E-value: 1.6e-22
                 HHHHHHHTT--H...HHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   1 ikrfadaleLpe...kVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 i+rfa+ le+ +   +Va +A  l+++  +++++kGr+pagi +Acl++A+r+++++r+ +ei++v+++++ t+
  CDO70998.1 201 ISRFAALLEFGDethQVAMDAIRLVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTL 274
                 89**********999*******************************************************9986 PP

>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   1.8     0.002       7.1      25      67 ..     298     355 ..     295     389 .. 0.45
   2 !   99.5   4.9   3.2e-32   1.1e-28       3     101 .]     517     616 ..     515     616 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
        BRF1  25 Wvelnke...yLeeqeekrlkeeaeeae.............adkkkkkkkrkrkkkekk 67 
                 W e+  +   y +  +ek++ke+  +++             ++k k kkkrkr+ +e++
  CDO70998.1 298 WLEEEMDppaYTK-GKEKEEKERLLQENggvlpdekakakgKSKGKGKKKRKREDDEDE 355
                 5555555444444.223333444333344667777655432222222222222222222 PP

  == domain 2  score: 99.5 bits;  conditional E-value: 3.2e-32
        BRF1   3 idddeideyllseeevkiKeriWvelnkeyLeeqeekrlkeeaeeaeadkkkkkkkrkrkkkekkkgep..etaaeavkkmlekk.klskkINydaLek 98 
                 +d++e+d+++l+eeev+iKer+Wve+n++yLe+ ++k +++e  e++  +kk++k+rk+++k ++ ++p  +taae+v+++++k+ k+sk+INy+aL++
  CDO70998.1 517 LDEEELDQFILTEEEVRIKERVWVEMNRDYLEALAAKAEQQEGTEDK--QKKPRKRRKTNNKPRDASTPtgATAAESVRNLIKKNpKYSKRINYNALKD 613
                 89*****************************************9999..3444444444443333333356**************77************ PP

        BRF1  99 Lfd 101
                 Lf+
  CDO70998.1 614 LFT 616
                 *96 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   5.1   1.3e-11   4.5e-08       2      42 ..       3      43 ..       2      44 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.3e-11
                  EETTTTCEECHEETSTTCEEESSSSBEEEECCCCCCCHHHH CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVlednsidegpewre 42
                  +C +Cg+t +++D++ g+ +C +CG+V+e+n i++++++ e
    CDO70998.1  3 VCTDCGGTVIEYDTAAGNGFCVNCGTVVEENTIVNEVTFGE 43
                  8************************************9987 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   4.4e-06     0.016      36      98 ..     104     166 ..      85     192 .. 0.81
   2 !   10.5   0.0   0.00011      0.39      49     105 ..     215     273 ..     199     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.4e-06
                 HHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHH CS
    Cyclin_N  36 dwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledl 98 
                   + +va+ ++l++ +++ a +++   +++k ++ +k   v+a+cL++A++ +e++   l d+
  CDO70998.1 104 RKIQQVATALRLSEVVALAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYMLIDF 166
                 44899********************99998888888*******************97777666 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
                 TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS..---HHHHHHHTTTS CS
    Cyclin_N  49 petlflavnyldRflskksvpkdklqlvgatcLllAaKveeis..ppkledlvyitdea 105
                 +++++ a++++ Rf +   ++ ++   ++ +cLllAa++++ +  + ++ ++v i+d +
  CDO70998.1 215 HQVAMDAIRLVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRrsVAEIVQVVKIADTT 273
                 67788899********9999999****************88764466666666666654 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   1.4e-05     0.051      14      41 ..       3      33 ..       1      36 [. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
         DZR 14 fCseCgtklkavaa...edrCpsCgekvdpe 41
                +C +Cg ++ ++ +   + +C++Cg+ v+++
  CDO70998.1  3 VCTDCGGTVIEYDTaagNGFCVNCGTVVEEN 33
                7********99988999*********99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 4566.70
//
Query:       CDO70999.1  [L=1294]
Description: hypothetical protein BN946_scf184844.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-24   86.8   0.0    2.1e-24   86.3   0.0    1.2  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    1.1e-09   38.1   0.0    4.7e-09   36.1   0.0    2.0  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase
      1e-06   28.4   1.5    1.7e-05   24.4   1.4    2.8  2  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
     0.0038   17.4   0.0     0.0061   16.7   0.0    1.3  1  RNase_H          RNase H


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   4.8e-28   2.1e-24       3     207 ..     670     889 ..     668     920 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 4.8e-28
                 -TT......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS
       RVT_1   3 Kkg.....pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrk 91 
                 K+g     p++yR+i+l s+ +k l  li  rL+d +     l+++q+gfr g+ t  +    + + +++++ ++   +++ Dl++aF sv+ + l++k
  CDO70999.1 670 KPGkdgsrPENYRTIGLESCFLKTLTVLIDRRLRDWAkaVGRLPDSQSGFRAGHRTYNNAfvvRAAIEKARALGRTLFIVFADLSNAFPSVDQHSLWSK 768
                 5555568899***************************77789*****************99999999999***************************** PP

                 GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...........TEEECTTEEEEEESSHHHHHHHHH CS
       RVT_1  92 ltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra.....kgvtllrYaDDililskskeelqelle 185
                 l++++v  +l ++++ ++s  ++ vr+ng +s+ +  + g+  G + SP+l+ l++++++ e +          v +l  aDDi +l+ s   +q+ l 
  CDO70999.1 769 LARWGVGGPLFDWLRMLYSAMQYFVRLNGDTSELFQAAIGILIGDPASPVLWLLYISDFDLEPDPDDvvlhgRRVSHLEQADDIALLCLSARGMQTKLA 867
                 *******************************9***************************9999987789*99*************************** PP

                 HHHHHHHHTT--BEGGG-EEE. CS
       RVT_1 186 aveewlkesglkinpeKtklvl 207
                  +e+++  + + +n  Kt ++ 
  CDO70999.1 868 QFEKYCDTVFVLVNVIKTVAAI 889
                 ******************9984 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.1e-12   4.7e-09       1     118 [.      86     229 ..      86     230 .. 0.83
   2 ?   -1.6   0.0      0.51   2.3e+03      88     117 ..    1243    1276 ..    1225    1278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.1e-12
  Exo_endo_phos_2   1 lliisvYippsd..........elenlestlekllselkspkiiilGDfNakhplWgsedtds......sargeeLiefleehslsll...... 72 
                      +l++svY pp+            ++ ++++l  l +++   +i++lGDfNa+    ++ + ++      s rg+ L+++  +++l+ll      
       CDO70999.1  86 ILLLSVYLPPEGspwlanagadPIQRFTECLLPLAQAHAL-PIVVLGDFNARVGCLSTGEPRQspdgvaSTRGRALLRAAATFHLHLLngtrhq 178
                      5789**************99999999******99999987.9**********999998666667899*********************665543 PP

  Exo_endo_phos_2  73 ..nllksgptfkssngsstiDltltsdnlals....kleleeedlgSDHrpi 118
                         + ++ + f++++ ss+iDl l+s++l++     ++ l +    SDH p 
       CDO70999.1 179 paPCRDRFTSFQPAG-SSVIDLALASHTLVDAahicVQTLPPIARWSDHAPL 229
                      322222335565555.5************99999877777777888999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.51
  Exo_endo_phos_2   88 stiDltltsdnlals....kleleeedlgSDHrp 117 
                         +D+ l+ d++++       +    +l SDH+ 
       CDO70999.1 1243 AALDVLLSADPTTVLplvaDYIADVFELCSDHPL 1276
                       5689999999998888887777788899****86 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   1.4   3.9e-09   1.7e-05      23     233 .]       7     226 ..       5     226 .. 0.58
   2 ?   -2.2   0.0      0.54   2.4e+03      64      98 ..     699     754 ..     608     761 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.9e-09
                    HHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH..ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos  23 adlltaydaDvlgLQEvdddelsriplllalggflgasstsp..tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni. 115
                    ++ll++y  Dv++LQE++ ++++++ l+l     + + s ++  t    + g+g+  l r  +    ++++ +++                   i 
     CDO70999.1   7 RALLSEY--DVILLQETHLRPGQDRQLALP--PGFACLSLARpvTATFTQAGGGLIALTRAHIPVEDVTPPNQYD-------------------Il 79 
                    7899999..****************99994..4444433333444444455555555555555444333333333...................23 PP

                    ..................................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH. CS
                    ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos 116 ..................................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap. 176
                                                      +            ll        l +++  p++v+GDfNa       rv +   +++ + p 
     CDO70999.1  80 alrisgilllsvylppegspwlanagadpiqrftE-----------CLLP-------LAQAHALPIVVLGDFNA-------RVGCLSTGEPRQSPd 150
                    33334445555555533355555333333222220...........2222.......22233457999******.......444444444444445 PP

                    ......H..................SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ......x..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ......v..................glyllgggptptyvtraggsrlDrilasp.alalfrsgvlppplalvrrealtlSDH 233
                          +                   +++ +   ++t   +ag s +D +las+  +     +v+  p  ++       SDH
     CDO70999.1 151 gvastrGrallraaatfhlhllngtRHQPAPCRDRFTSFQPAGSSVIDLALASHtLVDAAHICVQTLPPIARW------SDH 226
                    55555515555666677778888999***************************84444444444444444444......666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.54
                    H..................ECSSSTTSSEEEEEECSTE...EEEEEEEEEETSSSS CS
                    x..................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
  Exo_endo_phos  64 p..................tgggggggnggavlsrfpl...tslfrrtfiefndlv 98 
                                       ++++g++++  a ++r  +   ++l r+ fi f dl+
     CDO70999.1 699 DrrlrdwakavgrlpdsqsGFRAGHRTYNNAFVVRAAIekaRALGRTLFIVFADLS 754
                    04444444555555566667899999999999999999888777777777777766 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0061       2     103 ..     297     397 ..     296     410 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
                 .SEEEEEEEEEECTTTCEEEEE.EECTT..E.EEEEEECCCCHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS
     RNase_H   2 kavvvYtDGsclgnpgeggaga.vlykegar.nisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 
                 +av + +DG+      + ga + ++++ g+r n   +l++a++   a L A  ++L  ++    + i  D+ Y+   + +wv    + +w+++ +++  
  CDO70999.1 297 QAVCLVCDGADGTSDIPQGARVaLYWGTGHRlNTVLALPHATSRSHAHLLATAQVLLLADPTRPLRIWADCDYLHRVLAHWVPSLARAHWDCAHADT-- 393
                 578889999977776666666634454445589999999******************6588899**************************9887773.. PP

                 TTHHH CS
     RNase_H  99 knkdl 103
                  + +l
  CDO70999.1 394 LA-QL 397
                 33.34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 8585.30
//
Query:       CDO71000.1  [L=1437]
Description: hypothetical protein BN946_scf184844.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-62  209.4   0.0    9.1e-62  208.8   0.0    1.2  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    4.9e-19   68.7   0.4    1.1e-18   67.6   0.4    1.6  1  rve              Integrase core domain
    1.7e-11   43.9   0.0    3.4e-11   43.0   0.0    1.5  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    5.1e-06   26.2   0.0    1.1e-05   25.2   0.0    1.6  1  gag_pre-integrs  GAG-pre-integrase domain
     0.0038   17.2   3.0     0.0074   16.3   3.0    1.4  1  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
      0.035   14.2   0.2       0.17   11.9   0.0    2.2  2  rhaM             L-rhamnose mutarotase
      0.073   12.9   0.0       0.17   11.7   0.0    1.6  1  rve_3            Integrase core domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.8   0.0   3.6e-65   9.1e-62       2     241 ..     972    1214 ..     971    1215 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.8 bits;  conditional E-value: 3.6e-65
       RVT_2    2 tyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyv 97  
                  ty+lv+ P d   +g+ W  +kk++++ ++vkykarl aqGfsq+ g+dy  + +P ++ +s rL+lalaa++++    +d + a+Ln+ ld+++y+
  CDO71000.1  972 TYELVERPPDANVVGAVWALRKKRNERnEVVKYKARLCAQGFSQVYGVDYTLTASPTAHASSFRLVLALAAKHDWETDVIDFKNAYLNSRLDDTIYM 1068
                  8***********************9997889****************************************************************** PP

       RVT_2   98 kqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklk 194 
                  +qPpGfe+ ++e +v++L k+lyGlkqa+llW++ +  ++ ++g++rse   G++   t +  +i+ ++vdd ++++++  ++e++k +la+++++ 
  CDO71000.1 1069 RQPPGFEVPGRERHVWRLLKALYGLKQAGLLWYRVVCALMSEIGLTRSEYDPGVFHLITQDVVIIIVIHVDDCILVTNSRLLMEGLKAQLAQRYEIV 1165
                  ************************************************************************************************* PP

       RVT_2  195 dlgkvskfLGieiaq..eaggiklsladyiakvvkkfeltdaktvatPl 241 
                  +lg++   LG ei +  +a ++ ls+ +yi  +++ f++tda++v +Pl
  CDO71000.1 1166 NLGEARWLLGYEIRRdrSACTVSLSQVAYIDTMLSRFNMTDAHPVSVPL 1214
                  *************985567889999**********************97 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.4   4.1e-22   1.1e-18       4     117 ..     544     659 ..     541     661 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 4.1e-22
         rve   4 pgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve.pervlsDngseytskafrefladlgirvsftrpg 100
                  g+++++Dv+ + ++ +++gk y+++++dd+  ++++  ++++  a + +++ e+ v++  gv+ +++++sD+g eyts++f e l+++g++ ++t   
  CDO71000.1 544 YGDRVHTDVWgKAQVCTWDGKEYFITFLDDHADEAFVSLMRTKGEALSRYRAYEAWVKSHRGVQeIKTIQSDRGGEYTSREFVEHLEKHGTTRRLTIHD 642
                 5889**********************************************************999********************************** PP

         rve 101 rpqdnGkvErfhrtlkd 117
                 +pq+nGk+Er +rtl +
  CDO71000.1 643 SPQQNGKAERLNRTLVE 659
                 **************965 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.3e-14   3.4e-11       1     115 [.      88     206 ..      88     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.3e-14
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w  ++a  + l+++++ +sl  +v + + a+++W+  ++ y +++   +++ + +  +lk++eg + +  +++l +l +e +++g +++de   
       CDO71000.1  88 WTANHATIKTLLFQTLPESLKLEVLTLTRAVDMWRVVTSRYDNQGDFVQVNILTQIQRLKCEEGADPRPVLAQLAKLRSEYATAGGTLSDEQYK 181
                      78899999************************************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyetfvtaies....s 115
                      v++La LP sy+  v ai +     
       CDO71000.1 182 VHILALLPLSYRPAVRAILAsaqaT 206
                      *****************99843322 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.2e-09   1.1e-05       1      67 []     457     527 ..     457     527 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.2e-09
  gag_pre-integrs   1 gLYlldlssnanssvslsk..nkssinlWHrRLGHpsfsrlkkLfkkgllpglkisk..sevCeaCqlgKq 67 
                      gLY+l++ + ++++ ++++  +  s    HrR+GH     l+k++++g++ g++ +     +Ce+C+++Kq
       CDO71000.1 457 GLYPLSGVQPSSEARAAEAaaAAMSQLEFHRRMGHAYPPTLRKMVSEGVVTGIELDAaeVDFCEVCIQAKQ 527
                      68999987766666665552134555568***********************9875434779********8 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.0   2.9e-06    0.0074       2      16 ..     246     260 ..     245     260 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                  C+nC+++GH + +C
  CDO71000.1 246 RCFNCNKEGHTKAEC 260
                 6************** PP

>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   3.9e+03      11      53 ..     540     581 ..     536     621 .. 0.54
   2 ?   11.9   0.0   6.8e-05      0.17      19      83 ..     901     963 ..     887     990 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
        rhaM  11 eaieeYkklHaevwpevlealkeagirnysI.yldeegntLfai 53 
                  a++   ++H +vw +  +++   + ++y I +ld++ + +f  
  CDO71000.1 540 RAEAYGDRVHTDVWGK--AQVCTWDGKEYFItFLDDHADEAFVS 581
                 5555556788888875..34444444444443665555544443 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.8e-05
        rhaM  19 lHaevwpev..lealkeagirnysIyldeegntLfailevgddee.adaaaaaadpkvqeWwalmakl 83 
                 l ae w+e+  + +lk++ +++++ +    ++ Lfa   +g+d+e ++ +a+a  p+ ++W a m++ 
  CDO71000.1 901 LAAEFWEEMesEGELKDVAAQDMTAF----DSPLFALAALGSDDEpTYREAMA-GPEKEQWTAAMREE 963
                 55789****55568************....79999999996666648888888.**********9864 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05      0.17      11      29 ..     642     660 ..     632     666 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
       rve_3  11 gkPqqNglvEsfngtlrde 29 
                  +PqqNg++E++n+tl ++
  CDO71000.1 642 DSPQQNGKAERLNRTLVEH 660
                 68*************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 9145.63
//
Query:       CDO71001.1  [L=607]
Description: hypothetical protein BN946_scf184844.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.19   12.7   2.2       0.83   10.7   2.2    2.2  1  SHIPPO-rpt      Sperm-tail PG-rich repeat
       0.24   11.1   4.9       0.46   10.2   4.9    1.4  1  Pox_Ag35        Pox virus Ag35 surface protein
       0.53    9.5  11.9       0.83    8.9  11.9    1.2  1  NOA36           NOA36 protein
        9.2    6.3  10.2         17    5.4  10.2    1.4  1  RXT2_N          RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   0.00018      0.83       1      24 [.      32      53 ..      32      58 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
  SHIPPO-rpt  1 lPGPGtYkpnknvpsnksaPkysf 24
                +PGPG+Y+p +++ ++  aP  s+
  CDO71001.1 32 SPGPGYYSPSPTYHMQ--APRRSL 53
                6**********44444..776655 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.9    0.0001      0.46      46      99 ..     546     603 ..     529     607 .] 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
    Pox_Ag35  46 iP.spkqekkkr....attprkkpakkekkkkeeekeeaaeeeeledseedeenended 99 
                  P s++q+  ++      t +k+ + + ++k+++  +e+ ee+  ed++ede++++de+
  CDO71001.1 546 HPaSTRQDFDAHygslSPTEKKRISRQYSQKNQKDGKEGDEED-EEDEDEDEDEDEDEE 603
                 5656665555556666677888877666666666666655544.344444444444443 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  11.9   0.00019      0.83     252     300 ..     550     603 ..     540     607 .] 0.49

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00019
       NOA36 252 edsdydaylkalasg.....ddeddegdedddddddeedddeeeddedeeeeee 300
                 + +d+da++++l+ +     ++++ + ++ d ++ deed+++e++dede+e+ee
  CDO71001.1 550 TRQDFDAHYGSLSPTekkriSRQYSQKNQKDGKEGDEEDEEDEDEDEDEDEDEE 603
                 456788888888777444443333333333333333333333333333333332 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.2    0.0038        17      46      82 ..     566     602 ..     551     607 .] 0.54

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0038
      RXT2_N  46 pierskrkkkekekeekeeeeedeegdeededdddee 82 
                 + ++s++ +++++k+ ke +eedee+++eded+d++e
  CDO71001.1 566 KKRISRQYSQKNQKDGKEGDEEDEEDEDEDEDEDEDE 602
                 3333333335555555555555555555555555432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 4072.50
//
Query:       CDO71002.1  [L=995]
Description: hypothetical protein BN946_scf184844.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-49  167.8   0.0    1.6e-49  167.8   0.0    3.1  4  E1-E2_ATPase     E1-E2 ATPase
    4.6e-17   63.0   1.7    4.6e-17   63.0   1.7    2.9  2  Hydrolase        haloacid dehalogenase-like hydrolase
    5.6e-14   51.6   0.1    1.4e-13   50.3   0.1    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
      4e-05   23.5   0.0    0.00015   21.6   0.0    2.0  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
     0.0077   16.3   0.0      0.016   15.3   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.5   1.8e+03     106     157 ..     105     157 ..     101     163 .. 0.77
   2 !  167.8   0.0   4.6e-53   1.6e-49       3     180 ..     180     359 ..     178     360 .. 0.96
   3 ?   -2.8   0.0       1.1   3.9e+03      52      70 ..     562     580 ..     558     583 .. 0.83
   4 ?   -4.1   0.9       2.8   9.9e+03     125     143 ..     705     723 ..     690     737 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.5
                   ----HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHH CS
  E1-E2_ATPase 106 skktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallva 157
                   +++ p+ ++l+ + + l++v+ ++al+++++     +++  e ++ +++ll++
    CDO71002.1 105 EEQNPFLQFLSFMWNPLSWVMEAAALVAIALSNGEHRPPDwEDFVGIVTLLII 157
                   67788888888888999999999888888887666665557899999988887 PP

  == domain 2  score: 167.8 bits;  conditional E-value: 4.6e-53
                   S--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   3 lpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   l+p+akv r+g+++ei++++lvpGD++ +k gd+vpaD+r+ve  + ++d++aLTGEslp +k+ gd++fsG++ ++gea++vV+ tg +t++g++a
    CDO71002.1 180 LAPKAKVKRAGQWREIESAQLVPGDMISFKIGDIVPADCRLVEAVNvSIDQAALTGESLPQSKKVGDQCFSGSTCKQGEAEGVVISTGPNTFFGRAA 276
                   789********************************************************************************************** PP

                   TTS--------HHHHHHHHHHHH.HHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkv.lvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlak 180
                   +lv +   ++ +lqk+l ++g++ lv++++++++ +f +    + s ++ l ++l+ll++ iP+a+p++++++la+ga++lak
    CDO71002.1 277 NLVGQDDDTTGHLQKILAQIGSFcLVVIGIFVLAEIFCLYAGFRYSYRRGLDNILVLLIGGIPIAMPTVLSVTLAVGAQQLAK 359
                   ***********************8888888888888888888888888*********************************98 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.1
                   -TTTS---S-EE-G-TTEE CS
  E1-E2_ATPase  52 esaLTGEslpvekekgdmv 70 
                     ++TG++l++ ke+g ++
    CDO71002.1 562 VKMVTGDQLAIAKETGRRL 580
                   5789*********999765 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 2.8
                   HHHHHHHHHHHS-STTTSS CS
  E1-E2_ATPase 125 vvlliallvflialllgks 143
                   +v++ ++++f i+ + +k+
    CDO71002.1 705 AVTIRIVVCFSILAFAFKF 723
                   3333333333333333333 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.19   6.7e+02     144     198 ..      12      73 ..       9      75 .. 0.68
   2 !   63.0   1.7   1.3e-20   4.6e-17       2     210 .]     377     654 ..     376     654 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.19
                 EHHHHHHHHHHTT..GGGE.SEEEEHHCES.STTTSHHHHHHHHHHHT..ST.GGGEEEEES CS
                 xxxxxxxxxxxxx..xxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxx..xx.xxxxxxxxx RF
   Hydrolase 144 npetaeraanqlG..ddyf.daviasdiet.vakpspegkvaaireLq..gk.peevamVGD 198
                 + e+a+++a      ++ + d+ ++ +++  +ak++ ++ + +++ L   +k   e+++V+D
  CDO71002.1  12 STEPAQATAPAPEkkKREYkDFGHDEEEKPtHAKVDMSQIQLKAEDLYdkEKvDLETIVVED 73 
                 5678888888877674444366666666668****************422223345666666 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 1.3e-20
                 SEEEEESBTTTBCHH.............HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH..ETTTE.................. CS
                 xxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.................. RF
   Hydrolase   2 ktvvfDkdGTLttge.............psvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfat..figrg.................. 67 
                 + ++ Dk+GTLtt +              s edvi  a    a a +t ++  i + +v a  + s a +g+    f                      
  CDO71002.1 377 TILCSDKTGTLTTNKltidrdtvrtygpFSAEDVILLA----AYASRTENQDAIDQCVVGALGDPSRARAGIKLldF---Kpfnpvdkrteityreest 468
                 56899*******99977777666777767777777777....33333334444555555555555333333333221...0122333544554444444 PP

                 .......HHHHTHHHHHHHH.......HCHHHHHHHHHHHHHHCHHHHHH...............TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEE CS
                 .......xxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 .......ayaigkpewltal.......dippdlgaaigsaqsqgrtvall...............qaralavftiadplkvkpeaaeavasLkaagiev 137
                        +   g    + +l       + ++ l+a++++  ++g  +  +                 ++ ++++i dp  +++++++++    a g++v
  CDO71002.1 469 gklkrvtK---GMTGIIIDLctrnktdELENRLEADVEEFAQRGLRALAVayeeldgddpeaegnGFELIGLLAIFDP--PREDTKQTIDDALALGVKV 562
                 55564441...222222222222355556666777777777777776666899998888877664449**********..******************* PP

                 EEEESSEHHHHHHHHHHTT..GGGE.SEEEEHHCES................STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 138 vlltgdnpetaeraanqlG..ddyf.daviasdiet................vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ++tgd+ + a+++ ++lG  d+ + + v+    e                 +a++ pe+k +++++Lq+ ++ +am GDg+nDa+al +A+
  CDO71002.1 563 KMVTGDQLAIAKETGRRLGlgDHMYpAKVLKDGPEPgsrfknldemildadgFAGVFPEHKYEIVKRLQALGHLCAMTGDGANDAPALSRAN 654
                 ******************998666645555555555888888888888889******************99999**************9996 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1     4e-17   1.4e-13       6      69 .]      71     132 ..      67     132 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 4e-17
  Cation_ATPase_N   6 leevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +e+v++ L+  +enGLt++ea++rl+ +GpN+l e ++++ + ++l+ ++npl +++++aalv+
       CDO71002.1  71 VEDVFKLLQ-CDENGLTDEEANRRLELFGPNKL-ESEEQNPFLQFLSFMWNPLSWVMEAAALVA 132
                      899*****9.89*********************.999999999*******************95 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.81   2.9e+03      18      55 ..     546     583 ..     544     588 .. 0.82
   2 !   21.6   0.0   4.3e-08   0.00015     195     245 ..     626     676 ..     624     686 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.81
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  e tk++i  + + g+kv   TG +l  +++  + lgl 
   CDO71002.1 546 EDTKQTIDDALALGVKVKMVTGDQLAIAKETGRRLGLG 583
                  6799999999999***9999999888888877777765 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 4.3e-08
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE-- CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtks 245
                  ++k+l+     ++  GDg ND + L++a++g+A++ a++ + +aAd v + 
   CDO71002.1 626 IVKRLQALGHLCAMTGDGANDAPALSRANVGIAVEGATDAARSAADIVLTE 676
                  566677777778899*******************************99876 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.4e-06     0.016      36      90 ..     434     488 ..     406     489 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.4e-06
  Cation_ATPase  36 gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90 
                      d++++r+  k +   pFn + Kr  + +++e+++k+  ++KG   ii++ Ct+
     CDO71002.1 434 LGDPSRARAGIKLLDFKPFNPVDKRTEITYREESTGKLKRVTKGMTGIIIDLCTR 488
                    68999999999******************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6706.25
//
Query:       CDO71003.1  [L=219]
Description: hypothetical protein BN946_scf184844.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          3    7.8   5.2        1.9    8.5   3.5    1.5  2  PGA2      Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.5    0.0001       1.9      71     115 ..      82     125 ..      77     151 .. 0.64
   2 ?   -1.4   0.2      0.11   2.1e+03      60      60 ..     150     150 ..     125     203 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0001
        PGA2  71 ggeaksgesdedddegeeeedvakasgvpewgkkarkrqkkvlkk 115
                 g +++s +s+++d++ge+ ed ++++gv  w ++ r+  + v++ 
  CDO71003.1  82 GLASASADSESSDSDGES-EDEKENAGVRPWSRQVRRAIRTVREV 125
                 344445788888888877.7789999***********99988642 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.11
        PGA2  60 k 60 
                 +
  CDO71003.1 150 A 150
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1559.51
//
Query:       CDO71004.1  [L=340]
Description: hypothetical protein BN946_scf184844.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-65  219.9   1.1    2.3e-64  217.6   1.1    1.9  1  DUF1996   Domain of unknown function (DUF1996)
    0.00037   20.6   3.4    0.00085   19.5   3.4    1.6  1  WSC       WSC domain


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   1.1   2.6e-68   2.3e-64       1     233 []      33     245 ..      33     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 217.6 bits;  conditional E-value: 2.6e-68
     DUF1996   1 DPivspgevsshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptLYfk.kengsferveqkggllvYYllekkk.ekkvtafpkgfrmiaG 97 
                 D ivspg + +hvH+i+G+s+f+++ +y++l +s+ct++ +++DkSnYW+p+LY++ k++g f +++   g ++YYl ++ + ++ ++afpkgfr+ + 
  CDO71004.1  33 DSIVSPGGIGTHVHAITGASGFSNTYDYDQLIQSNCTNIPIQQDKSNYWMPQLYHRdKDTGAFVAMP--TGFNIYYLPRPGPkNEPIKAFPKGFRLPTP 129
                 99*****************************************************967778899997..6899*****988877779********9764 PP

     DUF1996  98 dptlrekslaqkaisftcleseekeeaeeetkelpkktkkkcasglraeilfpsCwdgknldspdhkshvaypskveesegkCpeshpvrlpqlfyevi 196
                  +  +        ++    + +   ++ +e++ lp   +++c++glra+++fpsCwdg+nldspdhkshvayp ++  ++g+Cp++hpv+l++lfye++
  CDO71004.1 130 PTPDK--------LT--VGTAD---DGPPEASPLP---TQQCSGGLRAQVFFPSCWDGVNLDSPDHKSHVAYPIQAF-NGGDCPDTHPVHLISLFYEMT 211
                 33332........22..33333...3447899***...577*******************************95554.69******************* PP

     DUF1996 197 wdtekfnkkedgksqpfvlsngdktGyglHaDFinGW 233
                  ++++f+ +  g ++++v++ngd+tG+glHaDF nGW
  CDO71004.1 212 VAVNEFEYH--G-NGTWVFANGDTTGFGLHADFQNGW 245
                 ******843..3.679********************* PP

>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.4   9.5e-08   0.00085      31      82 .]     254     310 ..     240     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.5e-08
         WSC  31 aafCkak...gykyagledgseCyCgnslpaaavkassss..CnasCsGdssqtCGg 82 
                 +++C+ +       a l   +eCyC n l+++a+ a      C  +C+G++ ++CGg
  CDO71004.1 254 IDQCSGEsgnLLDCAPLAAVDECYCDNALKNGATAALLPWyeCANRCAGNDFEICGG 310
                 556664322136677888889*********999877433256**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2447.05
//
Query:       CDO71005.1  [L=862]
Description: hypothetical protein BN946_scf184844.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-45  154.3   0.0    7.3e-45  152.8   0.0    1.7  2  Transket_pyr   Transketolase, pyrimidine binding domain
    5.5e-45  152.8   0.0    8.7e-45  152.1   0.0    1.3  1  OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
    1.1e-24   86.9   0.0    2.5e-24   85.8   0.0    1.5  2  E1_dh          Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.8   1.1e+04     110     129 ..     112     130 ..     109     135 .. 0.74
   2 !  152.8   0.0   1.2e-48   7.3e-45       3     176 ..     526     707 ..     525     709 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.8
                   EESBSGGGSTTGTTTSBSSH CS
  Transket_pyr 110 vtrlpigvgedGpehqsael 129
                   v   p+  +  Gpeh s+e 
    CDO71005.1 112 VWTRPV-GEDTGPEHWSLER 130
                   555666.6788****99886 PP

  == domain 2  score: 152.8 bits;  conditional E-value: 1.2e-48
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEEHHHHGGGHHGGHHHHHC CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagp.llviveaqFgdFangAqiyadqairs 98 
                   ++w++aea+a+++l+ e       g D ++g+    +  l+ +g+ ++ +s++sE +vlgf++G + ++p  l+i+eaqFgdF+ngAq+++d +i+s
    CDO71005.1 526 VDWATAEALAFGSLMLE-------GYDRTEGVVVPLNLALDCDGRLELANSSLSEMGVLGFEYGVSWEKPdILPIWEAQFGDFFNGAQVIIDTFITS 615
                   57888888888888876.......67999999999999*********************************************************** PP

                   HHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT..............EEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  99 geakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg..............lkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                    e+k+  ++g+v++lp+g+++ Gpeh+s ++e++l+l+++              ++v+ P++pa+++hllrr+++r++rkP+v++ pk+llr
    CDO71005.1 616 AETKWLKQSGIVLLLPHGLDGAGPEHSSSRIERMLQLTNDpytfdtgaepanvnMTVAFPTTPAQYFHLLRRQVKRNFRKPLVVAGPKGLLR 707
                   ******************************************************************************************98 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.0   1.5e-48   8.7e-45       2     152 .]     713     858 ..     712     858 .. 0.97

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 1.5e-48
  OxoGdeHyase_C   2 SsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEpkNq 97 
                    Ssl++l+eg++F++vl+d++    ++p+ v rvv  +Gk+yydL++er+k++ + +va++r E+l+Pfpf++ +++l++Y  ake++W+QeEp+Nq
     CDO71005.1 713 SSLSDLTEGSRFRPVLDDPAI---SDPAAVPRVVCLTGKLYYDLVRERQKRQLDGEVAFIRFEELSPFPFQKAADVLSRYGGAKEIIWLQEEPRNQ 805
                    99*****************99...47********************************************************************** PP

  OxoGdeHyase_C  98 GawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152
                    Gaws+veprl++vl++    ++   y gr++ a pA G+++ ++++q++++++af
     CDO71005.1 806 GAWSHVEPRLNAVLERL--GRSGALYRGRKEDAVPAPGIASLYAAQQKTVIDAAF 858
                    **************965..567899***************************998 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.72   4.3e+03      11      61 ..     193     246 ..     186     274 .. 0.76
   2 !   85.8   0.0   4.2e-28   2.5e-24     163     291 ..     344     471 ..     343     478 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.72
                 HHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT.SEEEES..S--HHHHHH CS
       E1_dh  11 daldalykrkkrigfyhlsagqealkvgiaaaleke.Dliite..YReagvlla 61 
                  +l+ ++ + kr g++  +   +al  +   a + + ++ii +  +R++ ++l+
  CDO71005.1 193 RFLQLKFPNLKRYGLEGGESMLPALDGLFSRAAQAGvEHIIIGmpHRGRLNFLT 246
                 567777888889999999999999998888888888877766558999999886 PP

  == domain 2  score: 85.8 bits;  conditional E-value: 4.2e-28
                 EETTEEHHHH-S---GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHH CS
       E1_dh 163 ygisTeaekasaskeladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkel 261
                 +g +T+a+ a++s + +d+a+  ++p l+V+g+ p+ v  Av  A ++++ + ++++++l+ YR+ gH+e D+p +++ + ++e++r+ + + + ++e+
  CDO71005.1 344 IGYTTPASSARSSLYCSDVAKMINAPVLHVNGDYPEDVQRAVDIAFKYRNYFRRDIIVDLIVYRRWGHNELDEPAFTQ-PLMYEKIRSRRSVPALYEER 441
                 799***************************************************************************.******************** PP

                 HHHTTSS-HHHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 262 Lvkkgvvseeelkeiekevrkeveeavkka 291
                 L++++v+++e  +  ++  ++    +++ a
  CDO71005.1 442 LIDENVLTKEAADSFRSGHKEFLSSELAAA 471
                 **********99998887776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 6350.97
//
Query:       CDO71006.1  [L=316]
Description: hypothetical protein BN946_scf184844.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-44  150.7   0.0    2.2e-42  145.2   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.19   11.3   0.0         23    4.6   0.0    2.2  2  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   2.5e-46   2.2e-42       2     292 ..      17     285 ..      16     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 2.5e-46
                   EEEE-SSS-ST.TS-HHHHHHHHHHHH.HTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrral.eaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrL 97 
                   +glGtwq       ++ee++ ++++al eaG++++D+A++Y    +e+++Ge + +s+++r e+++++K+        ++ ++++++++l+e+l +L
    CDO71006.1  17 VGLGTWQS------KPEEVITAVEYALkEAGYRHIDCAWAY---DNEKEVGEGIRRSGVPRSEIFLTSKL--------WCTHHNRVEAALDETLANL 96 
                   68899954......589************************...**************************........889999************* PP

                   T-S-EEEEEE-S--TTS-......................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHH CS
  Aldo_ket_red  98 gtdyvDllllHrpdpslp.....................sieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllrelee 172
                   gtdy+Dl+l+H+p +  p                     +i ++++ +e +  +Gk+raiGvSnfs ++le+  +  +kv +++ qve +l+    +
    CDO71006.1  97 GTDYLDLYLVHWPIHLNPngnhpkfptrpdgsrdvltdwKIRDTWAQMEAVLAKGKVRAIGVSNFSERILEQDlLPYAKVVPAVDQVELHLY--NPQ 191
                   **********************************************************************99879999999***********..*** PP

                   TTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHH CS
  Aldo_ket_red 173 egllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieq 269
                    +l+e++k kg+   aysplg+                               l+++e++s+la+++g s a + l y++   + ++++ ++ n+++
    CDO71006.1 192 LKLVEYLKSKGIVPQAYSPLGSTNSP---------------------------LLQDETASALAQKYGLSTADILLGYLV--AKDIVTLTKSVNPKR 259
                   *********************43222...........................4899***********************..9************** PP

                   HHHHHG.GG.G-.---HHHHHHHHHH CS
  Aldo_ket_red 270 lednld.al.el.klseeevaeldel 292
                   ++ n++ al +  kl++e++++ld +
    CDO71006.1 260 IKSNIEgALaAAkKLTKEDIEKLDGV 285
                   *****84334346*********9976 PP

>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0032        29      79     111 ..     126     158 ..     125     160 .. 0.94
   2 ?    4.6   0.0    0.0025        23      44      79 ..     261     296 ..     252     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0032
  Phage_P2_GpU  79 lGtgevlgkwviesisetqsefladGaarkief 111
                   +G+ +vl  w i +  ++ +++la+G++r+i +
    CDO71006.1 126 DGSRDVLTDWKIRDTWAQMEAVLAKGKVRAIGV 158
                   6999*************************9976 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0025
  Phage_P2_GpU  44 titlsgvlfpeltggreeleaLramaeagealpLvl 79 
                   + +++g+l +     +e +e+L  +a++g++++L++
    CDO71006.1 261 KSNIEGALAAAKKLTKEDIEKLDGVAASGKQMRLIQ 296
                   66899*******99********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2395.37
//
Query:       CDO71007.1  [L=316]
Description: hypothetical protein BN946_scf184844.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-17   64.3   0.0    3.1e-17   63.6   0.0    1.3  1  HAD              haloacid dehalogenase-like hydrolase
    5.9e-06   26.0   0.0    8.7e-06   25.4   0.0    1.3  1  UMPH-1           Pyrimidine 5'-nucleotidase (UMPH-1)
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.032   14.5   0.0    1.7  1  Hydrolase        haloacid dehalogenase-like hydrolase
      0.047   14.0   0.1         12    6.3   0.0    2.9  3  SpoU_sub_bind    RNA 2'-O ribose methyltransferase substrate 
      0.065   12.6   0.0       0.35   10.2   0.0    2.1  3  Put_Phosphatase  Putative Phosphatase
      0.091   12.5   0.0        2.6    7.8   0.0    2.3  2  DUF3148          Protein of unknown function (DUF3148)


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0     1e-20   3.1e-17       6     188 .]      63     256 ..      62     256 .. 0.70

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1e-20
         HAD   6 DgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfv............aevirpk.......l 85 
                 DgT++  ds++++++  l+ g++++++ ++  l         +++     e+l+ +   ++ ++ +e++r++            +     k       +
  CDO71007.1  63 DGTITSRDSNDYMTD-NLGFGPEKRRQGNLDILAGKT-----TFRSVRMFEALYGTSPLFTLPCSDEFRRMLqsvvanghtfeeC-----KevlkkniA 150
                 ***************.777755554555555433333.....3322333355555666666667777777774444444444332.....044334567 PP

         HAD  86 ldpgalellaahraaGdrvvvvSgglrplvepll.aelg.....adevlatelevdd..rltgelglegkpvrgegkvaalrewlaaegegidleevva 176
                 ldpg++++++ +++  ++vv++S+g+ pl++++l  +lg      +e+++++++ +    +  ++  ++++ +g++k +a+   + a    +d++++++
  CDO71007.1 151 LDPGFKDFYRYCKEHDIPVVIISSGMAPLIRAVLsSLLGeeeskEIEIVSNDVDIHPdgTWEIKY-RHPTSGFGHDKSQAILP-YRAL---PDPPTIFF 244
                 99********************************88***99988888899988887755444443.456678889***99999.2222...45556999 PP

         HAD 177 yGDspsDlpllr 188
                 +GD++sD+ ++r
  CDO71007.1 245 FGDGVSDMSAAR 256
                 9********997 PP

>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.9e-09   8.7e-06      84     149 ..     144     211 ..     128     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.9e-09
      UMPH-1  84 vkeskialrdgveelfekleklnvPvlifsaGlgdvleevlrqa..nvvysnvkvvsnfldfdedGvl 149
                 v + +ial  g++++++  +++++Pv+i s+G++ ++  vl     +   + +++vsn +d   dG+ 
  CDO71007.1 144 VLKKNIALDPGFKDFYRYCKEHDIPVVIISSGMAPLIRAVLSSLlgEEESKEIEIVSNDVDIHPDGTW 211
                 5567899***********************************988678889***********999975 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.1e-05     0.032     116     210 .]     148     259 ..      84     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                 THHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TT......GGGESEEEEHHCES.......STTT...SHHHHHHHHHHHT..STGGGEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx......xxxxxxxxxxxxxx.......xxxx...xxxxxxxxxxxxx..xxxxxxxx RF
   Hydrolase 116 plkvkpeaaeavasLkaagievvlltgdnpetaeraanq.lG......ddyfdaviasdiet.......vakp...spegkvaaireLq..gkpeevam 195
                 ++ + p+ +++ ++ k+  i+vv+++++     +++++  lG       +++++ +++  ++       +  p      +k +ai  ++   +p  + +
  CDO71007.1 148 NIALDPGFKDFYRYCKEHDIPVVIISSGMAPLIRAVLSSlLGeeeskeIEIVSNDVDIHPDGtweikyrH--PtsgFGHDKSQAILPYRalPDPPTIFF 244
                 44578999**************************999998998776433333444444444477766441..255555666666655555566779*** PP

                 EESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase 196 VGDgvnDaaalaaAg 210
                 +GDgv D++a++ A+
  CDO71007.1 245 FGDGVSDMSAARHAD 259
                 ************997 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        54      20      49 ..     143     172 ..     125     174 .. 0.77
   2 ?   -1.0   0.0      0.76   2.3e+03      18      48 ..     258     286 ..     253     289 .. 0.74
   3 ?    6.3   0.0    0.0039        12       1      16 [.     300     315 ..     300     316 .] 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
  SpoU_sub_bind  20 kllvteg.radkrleellklakkrgikvelv 49 
                    + +++++ + d+ ++++ +++k+ +i+v ++
     CDO71007.1 143 E-VLKKNiALDPGFKDFYRYCKEHDIPVVII 172
                    3.45666699*****************9766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.76
  SpoU_sub_bind  18 iekllvtegradkrleellklakkrgikvel 48 
                     + l+v++++ ++   +l + +++ +i+ +l
     CDO71007.1 258 ADVLYVKQKEGGDN--DLAAFCRRENIPHIL 286
                    56789999955555..999999999998765 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0039
  SpoU_sub_bind   1 liyGlhaVleaLksgr 16 
                    +++G+++V+eaL+ gr
     CDO71007.1 300 IVEGKKSVQEALAEGR 315
                    69**********9986 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.67     2e+03       8      26 ..      63      81 ..      61      90 .. 0.87
   2 ?   10.2   0.0   0.00012      0.35      47     132 ..     125     211 ..     116     224 .. 0.77
   3 ?   -1.9   0.0       0.6   1.8e+03     172     185 ..     242     255 ..     238     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.67
  Put_Phosphatase  8 Dktiidedsdnwvvdelpa 26
                     D ti + ds++ ++d l++
       CDO71007.1 63 DGTITSRDSNDYMTDNLGF 81
                     89**********9999986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00012
  Put_Phosphatase  47 drvlkelheqgvseadikkvlr.siplspglvelikslakkkleldliiiSDaNsffieeileaagledlFse..iftNPaavdasGel 132
                       r+l+ + ++g + ++ k+vl+ +i+l+pg+ +  + +  k++ + ++iiS      i  +l+ +  e+  +e  i +N   +  +G+ 
       CDO71007.1 125 RRMLQSVVANGHTFEECKEVLKkNIALDPGFKDFYRYC--KEHDIPVVIISSGMAPLIRAVLSSLLGEEESKEieIVSNDVDIHPDGTW 211
                      69******************9636**************..466899*****98888888888766444444332356666655555555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.6
  Put_Phosphatase 172 liYvGDganDlCpv 185
                      +++ GDg  D+ + 
       CDO71007.1 242 IFFFGDGVSDMSAA 255
                      899*******9765 PP

>> DUF3148  Protein of unknown function (DUF3148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00088       2.6      23      46 ..      52      75 ..      50      79 .. 0.94
   2 ?    1.9   0.0     0.063   1.9e+02      38      51 ..     203     216 ..     201     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00088
     DUF3148 23 LRppdlvklgeeGviidrrpgdyw 46
                LRpp++ ++   G+i++r ++dy+
  CDO71007.1 52 LRPPAFCHVYADGTITSRDSNDYM 75
                9*********************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.063
     DUF3148  38 idrrpgdywaVrfa 51 
                 +d++p ++w+++ +
  CDO71007.1 203 VDIHPDGTWEIKYR 216
                 689********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2133.46
//
Query:       CDO71008.1  [L=527]
Description: hypothetical protein BN946_scf184844.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-71  241.5   0.1    2.6e-71  240.3   0.1    1.6  1  DUF1996   Domain of unknown function (DUF1996)
    1.4e-11   44.4   7.4    3.4e-11   43.2   7.4    1.6  1  WSC       WSC domain


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.1   2.9e-75   2.6e-71       1     233 []      34     338 ..      34     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 2.9e-75
     DUF1996   1 DPivspgevsshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptLYfkkengsferve....qkggll....................... 72 
                 D iv+pg++ shvH+i G+s+f++  + ++l ks+ct++ v+ DkSnYW+p+LY++++ngs+++++                                 
  CDO71008.1  34 DSIVNPGTIGSHVHAIAGASGFSNVYDPDALVKSNCTTIPVQPDKSNYWAPQLYHQAQNGSLTPIReclaI----Flvysfqgrlsdlarskwpichge 128
                 99***************************************************************955550....255556666679999999999999 PP

     DUF1996  73 .............................vYYllekkk.ekkvtafpkgfrmiaGdptlrekslaq...kaisftclesee.................. 120
                                              +YYl ++ + ++k++afpkg+rm+aGd+++r+ ++++   +a+s++cl s +                  
  CDO71008.1 129 frvhdingyalqdetvltdrrfptatsfnIYYLVRNGAkNAKIHAFPKGLRMVAGDTNRRTYNASSfadQAVSYVCLGSPTplplisrfnadhtprady 227
                 99********************************77666889******************66644443388******9999*************99998 PP

     DUF1996 121 ..keeaeeetkelpkktkkkcasglraeilfpsCwdgknldspdhkshvaypskveesegkCpeshpvrlpqlfyeviwdtekfnkkedgksqpfvlsn 217
                   ++++ ++ +e p+  +++c++g+ra+++fp Cwdg+nldspdhksh++yp ++  ++g+Cp+shpv+l++lfye++ ++++f+ +  g ++++vl+n
  CDO71008.1 228 nnDHTGDPNWAERPNFFQQNCPDGMRAQVFFPACWDGVNLDSPDHKSHMSYPVDA-YNTGDCPDSHPVHLVSLFYEMLVSVDQFEYH--G-EGTWVLAN 322
                 65333334455556557899*******************************9544.479*************************943..3.679***** PP

     DUF1996 218 gdktGyglHaDFinGW 233
                 gd+tGyg H+DF nGW
  CDO71008.1 323 GDTTGYGHHGDFQNGW 338
                 **************** PP

>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   7.4   3.8e-15   3.4e-11       2      76 ..     432     507 ..     431     510 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3.8e-15
         WSC   2 lGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassss..CnasCsGds 76 
                 lGC+ ++ ++ r+l + s++d  mt   Ca++C + gyk+ag+e ++eCyC n+++++a+ +  +   Cn  C+G+s
  CDO71008.1 432 LGCIAEG-TNGRALPALSMKDPGMTRAMCASYCGSHGYKLAGVEFSDECYCDNEVKNGASMNFLTWsqCNNHCAGNS 507
                 79***99.688899999*****************************************9888544355*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3828.37
//
Query:       CDO71009.1  [L=242]
Description: hypothetical protein BN946_scf184844.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-60  200.3   0.1    1.9e-59  199.1   0.0    1.7  2  Ribosomal_S6e  Ribosomal protein S6e
  ------ inclusion threshold ------
        0.6   10.2   4.3       0.66   10.1   1.5    2.1  2  MKLP1_Arf_bdg  Arf6-interacting domain of mitotic kinesin-lik


Domain annotation for each model (and alignments):
>> Ribosomal_S6e  Ribosomal protein S6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.1   0.0   2.1e-63   1.9e-59       1     125 []       1     126 [.       1     126 [. 1.00
   2 ?   -2.5   0.1      0.51   4.6e+03      19      34 ..     208     223 ..     197     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 199.1 bits;  conditional E-value: 2.1e-63
                    -EEEEEETTTTEEEEEE-.CHHHCTTCTT-BSSEEEECCTTTSSSTS-EEEEEEEEETTC-BB-TTS-SSSEEEEEEETTSSSS-SSSSS-EEEEE CS
  Ribosomal_S6e   1 mklnisdpatgkqkliev.dekklrtligkrigeevdgdalGeelkgyvlkitggsdkqGfpmkqgvltpgrvrlLlskggvgyrprrkGerkrks 95 
                    mklni++patg+qk++++ dekk r +++kri++ev gdalG+e+kgy+++itgg+dkqGfpmkqgvl p+rvrlLls+g+++yrprr+Gerkrks
     CDO71009.1   1 MKLNIANPATGEQKTYDFdDEKKYRIFYDKRISQEVPGDALGDEWKGYIFRITGGNDKQGFPMKQGVLLPHRVRLLLSDGHSCYRPRRTGERKRKS 96 
                    9*********************************************************************************************** PP

                    EE-SB--SSEEEEEEEEEE--SS--TTTSS CS
  Ribosomal_S6e  96 vrGcivsadisqlnlvivkkgekdiegltd 125
                    vrGciv  di++l+lvivk+ge+di+gltd
     CDO71009.1  97 VRGCIVGPDIAVLSLVIVKQGENDIPGLTD 126
                    *****************************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.51
                    CHHHCTTCTT-BSSEE CS
  Ribosomal_S6e  19 dekklrtligkrigee 34 
                    ++++ +tl+ kri+e+
     CDO71009.1 208 QKAEYETLLAKRIAEK 223
                    3455677888888765 PP

>> MKLP1_Arf_bdg  Arf6-interacting domain of mitotic kinesin-like protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.073   6.5e+02      28      69 ..     125     166 ..     116     176 .. 0.67
   2 ?   10.1   1.5   7.4e-05      0.66       5      55 ..     189     239 ..     184     242 .] 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.073
  MKLP1_Arf_bdg  28 lgtilqpklkkkksvtkltkpkelalakaskYvLthqeqdsd 69 
                    ++t+l  +l  k++++  +  +  ++  + kYv+    + ++
     CDO71009.1 125 TDTVLPKRLGPKRATKIRKFFNLTKEDDVRKYVVRREVKSQK 166
                    678888777744444444445666677899999876555444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 7.4e-05
  MKLP1_Arf_bdg   5 prhrrsrsagerwldHkpksnvdlgtilqpklkkkksvtkltkpkelalak 55 
                    +r r  rs + r ++ + +++ + +t+l  ++ +kk++    k +++++a 
     CDO71009.1 189 QRRRHLRSLKRRRIERQKEQKAEYETLLAKRIAEKKEKAAAVKASHKKAAA 239
                    34555677799**********************777777766666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1359  (0.075799); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1688.71
//
Query:       CDO71010.1  [L=151]
Description: hypothetical protein BN946_scf184844.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-31  108.4   0.1    2.5e-31  107.5   0.1    1.5  1  Ribosomal_S13_N  Ribosomal S13/S15 N-terminal domain
    1.9e-14   53.6   0.5    2.5e-14   53.2   0.5    1.2  1  Ribosomal_S15    Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S13_N  Ribosomal S13/S15 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.1   2.7e-35   2.5e-31       1      60 []       1      60 [.       1      60 [. 1.00

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 2.7e-35
                     X--SSSSSS--------S-SS--TTS---HHHHHHHHHHHHHTT--HHHHHHHHHHCCT- CS
  Ribosomal_S13_N  1 MarmhsrgkGkSgSarPyrreapsWlklskeeveelivklakkGltpSqIGviLRDqyGv 60
                     M+rmh++gkG+S+Sa+Pyrr +psWlk+++e+v+e+i+kla+kGltpSqIGv+LRD++G+
       CDO71010.1  1 MGRMHAPGKGISSSALPYRRAPPSWLKTTPEDVVEHICKLARKGLTPSQIGVTLRDSHGI 60
                     ***********************************************************9 PP

>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.5   2.8e-18   2.5e-14       4      78 ..      74     146 ..      70     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.8e-18
                    HHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHC CS
  Ribosomal_S15   4 likefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdv..erYkkliekl 78 
                    ++k+++ ++    ++++++ +l+++++++++hl+ n+kDk+s+ +L++++s++++l +Y+k+k+   +++k+  +++
     CDO71010.1  74 ILKSNGLAP----QIPEDLWHLVKKAVAVRKHLEVNRKDKDSKFRLILIESRIHRLARYYKTKQQipPTFKYDSATA 146
                    588899999....9*************************************************99899999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1062.63
//
Query:       CDO71011.1  [L=184]
Description: hypothetical protein BN946_scf184844.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-52  175.1   0.0      1e-51  174.8   0.0    1.0  1  UPF0220   Uncharacterised protein family (UPF0220)


Domain annotation for each model (and alignments):
>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   5.6e-56     1e-51      14     166 .]      20     178 ..      11     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 5.6e-56
     UPF0220  14 klensakrravgvylaGaLfalgfwlliDaaivskkanasd........vhvtfvdwipgicstlgmlivnsieksrlsg.dslgqsgssvawkarvvL 103
                 +++  ++rr +g+ylaG Lfal+ w+++Daai+s +a +          vhv fvdw+pg++s lgm+i+n i+k+r++g + +g s  +++w+ar++L
  CDO71011.1  20 NISLGKHRRIIGIYLAGGLFALANWTFLDAAILSAHAHSPYgeperpppVHVGFVDWVPGLFSLLGMIIINLIDKDRVQGnEGFGDS--RAVWRARLFL 116
                 6788999*****************************9555589*************************************4558855..59******** PP

     UPF0220 104 flGfallagglagslvvlilkYvvkdytefptlgmGvanvlqNllimlssvvlwvsqnvedeY 166
                 f+Gfa++agglags++vl+lkY++++  + + +++G+anv qN+++mls++vlw+sq+v  eY
  CDO71011.1 117 FIGFAFMAGGLAGSVCVLVLKYILNHF-PEQYTYYGYANVSQNVALMLSAIVLWISQSVSTEY 178
                 ************************888.45789*************************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1440.59
//
Query:       CDO71012.1  [L=143]
Description: hypothetical protein BN946_scf184844.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0012   18.6   0.0     0.0014   18.5   0.0    1.1  1  DUF4448       Protein of unknown function (DUF4448)
     0.0022   18.7   0.1     0.0032   18.2   0.1    1.3  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07    0.0014      12      73 ..      33      92 ..      27     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-07
     DUF4448 12 rCtpdrynkkgssePFCtPkegselkvgktYyiTWdprfF.dekenekVkihlsyvkestkek 73
                +C   +   ++ s P+ +Pk g+ +++g+t  +TWd++    ++ n++  i l y++  ++++
  CDO71012.1 33 AC---AAPADDFSPPITSPKAGDVWTIGSTQNVTWDTSNIpPHNVNQTGLILLGYLEDGSEDE 92
                56...3445677889**********************99864456666666666666666655 PP

>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   3.6e-07    0.0032       1      81 [.      46     134 ..      46     141 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.6e-07
  GPI-anchored   1 tsPssgevvtagkpvtitWkdsgtdp...gtvtlvLc....agss.nnlksvktiasgiknsdgsytwtvpaslesggaYflqiv.sesn 81 
                   tsP++g+v+t g++ ++tW++s+  p    ++ l L+     gs+ ++l+   ++a + + ++g + ++v ++++s ++Y + +  +++n
    CDO71012.1  46 TSPKAGDVWTIGSTQNVTWDTSNIPPhnvNQTGLILLgyleDGSEdEHLDINHPLAVNFPITAGFALVDV-PEVKSRDDYVVVLFgNSGN 134
                   79*******************9844445555555554111144443446666777888887777777777.4577778887777755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1042.35
//
Query:       CDO71013.1  [L=677]
Description: hypothetical protein BN946_scf184844.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-18   64.2   8.2      0.001   19.3   0.0    6.9  6  Kelch_6   Kelch motif
    4.2e-15   55.5   8.1      0.011   15.8   0.1    6.7  6  Kelch_4   Galactose oxidase, central domain
    2.3e-14   53.0  11.0      0.006   16.6   0.1    6.2  6  Kelch_5   Kelch motif
    3.7e-13   48.8   5.2    9.9e-05   21.8   0.0    6.1  5  Kelch_1   Kelch motif
    4.8e-09   36.3  10.6       0.29   11.5   0.0    6.6  7  Kelch_3   Galactose oxidase, central domain
    1.3e-06   28.2   3.9        1.2    9.3   0.2    6.1  5  Kelch_2   Kelch motif
    0.00049   20.1  13.7     0.0018   18.3  13.7    2.1  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.042   13.8   0.2        7.5    6.6   0.0    2.4  2  RepA_N    Replication initiator protein A (RepA) N-terminus
       0.15   11.8   0.0       0.29   10.9   0.0    1.4  1  DUF1572   Protein of unknown function (DUF1572)
       0.66   10.3  10.5        2.2    8.6  10.5    2.0  1  zf-C6H2   zf-MYND-like zinc finger, mRNA-binding


Domain annotation for each model (and alignments):
>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06    0.0026       2      47 ..     259     306 ..     258     309 .. 0.83
   2 !    8.2   0.0    0.0018       3.2       3      44 ..     310     344 ..     308     351 .. 0.89
   3 !   19.3   0.0   5.7e-07     0.001       4      47 ..     365     408 ..     363     413 .. 0.89
   4 ?    5.7   0.0     0.011        20      23      42 ..     447     479 ..     430     490 .. 0.70
   5 !    6.1   0.1    0.0081        14      15      50 .]     505     557 ..     494     557 .. 0.84
   6 !    6.7   0.1    0.0051       9.2       2      24 ..     557     582 ..     556     608 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
     Kelch_6   2 raghslvsvggkiYifGGytds.spylnkvwvydpet.ksWeqlpplp 47 
                 r++h+++++ +++Y++GG+  +  + + ++w++d++  + W++lp ++
  CDO71013.1 259 RMAHAAFIYKSRLYVCGGQRSGtIQVYHDMWCLDLIRmNGWRELPKYK 306
                 899****************877866666679***887357****9876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
     Kelch_6   3 aghslvsvggkiYifGGytdsspylnkvwvydpetksWeqlp 44 
                 + +++v+ ggk Y+f G          v ++d+et +W +++
  CDO71013.1 310 LNCQMVVSGGKAYLFRGF-------PTVDFFDLETERWGRIQ 344
                 5799**************.......99***********8776 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 5.7e-07
     Kelch_6   4 ghslvsvggkiYifGGytdsspylnkvwvydpetksWeqlpplp 47 
                  +s+ +v+gkiY+fGG        n + v+d+ tk+W++l+  p
  CDO71013.1 365 DYSMHAVNGKIYVFGGKHKRYIGCNLFAVLDVATKTWRRLSGTP 408
                 689**************999888999*************98665 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.011
     Kelch_6  23 s.............spylnkvwvydpetksWeq 42 
                 +             +  +n+ w +d++ ++W++
  CDO71013.1 447 QaaqmfsqefasseGFVYNDCWSWDIKEGRWQR 479
                 455555555666667788*************96 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0081
     Kelch_6  15 YifGGytds.............spylnkvwvydpe..tksWeql..pplpvpr 50 
                 ++fGGy+ +             ++y+++ +v+d     ++W+q+  p++p++r
  CDO71013.1 505 VMFGGYNPAlpfyvessqvcfgFNYFSDTFVLDHTapMHRWKQVitPSFPTYR 557
                 689999999999999999999************55337899996669999987 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0051
     Kelch_6   2 raghslvsvg..gkiYifGGytds.s 24 
                 ra+++l +    g+ Y+fGGyt+  +
  CDO71013.1 557 RAQGQLLTDPatGRMYLFGGYTNTdW 582
                 666777663334999********762 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.9e-05     0.069       2      44 ..     259     302 ..     258     304 .. 0.89
   2 ?    0.8   0.0      0.29   5.2e+02      31      44 ..     330     343 ..     328     346 .. 0.85
   3 !   15.8   0.1     6e-06     0.011       4      45 ..     365     406 ..     364     412 .. 0.88
   4 !   13.5   0.1     3e-05     0.054      23      43 ..     459     479 ..     457     488 .. 0.78
   5 !    7.1   0.0    0.0029       5.3       1      45 [.     489     551 ..     489     555 .. 0.80
   6 ?    3.0   0.1     0.058     1e+02      13      26 ..     569     594 ..     561     611 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-05
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg.tllndlylldl.stntWrrl 44 
                 R+ h+a+   + ++y+ GG+ + + +++ d++ ldl  +n Wr+l
  CDO71013.1 259 RMAHAAFIY-KSRLYVCGGQRSGTiQVYHDMWCLDLiRMNGWREL 302
                 777888888.79**********66***********9999999987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.29
     Kelch_4  31 lylldlstntWrrl 44 
                 ++++dl+t +W r+
  CDO71013.1 330 VDFFDLETERWGRI 343
                 689********876 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 6e-06
     Kelch_4   4 ghsatsipdgtiylfGGrgedgtllndlylldlstntWrrl.g 45 
                 ++s+ ++ +g+iy+fGG       +n   +ld++t+tWrrl g
  CDO71013.1 365 DYSMHAV-NGKIYVFGGKHKRYIGCNLFAVLDVATKTWRRLsG 406
                 5789999.7************9****99************953 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 3e-05
     Kelch_4  23 edgtllndlylldlstntWrr 43 
                 ++g ++nd++ +d++ ++W+r
  CDO71013.1 459 SEGFVYNDCWSWDIKEGRWQR 479
                 55789**************54 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0029
     Kelch_4   1 pRaghsatsipd.gtiylfGGrgedg..............tllndlylldlstn..tWrrl..g 45 
                 pRa  s++++p     ++fGG+++ +                ++d+++ld +    +W+++  +
  CDO71013.1 489 PRAEMSVCYNPVtKQTVMFGGYNP-AlpfyvessqvcfgfNYFSDTFVLDHTAPmhRWKQVitP 551
                 899999999988656677******.779999999999999999999999975555588888743 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.058
     Kelch_4  13 gtiylfGGrgedg............t 26 
                 g+ ylfGG+++ +             
  CDO71013.1 569 GRMYLFGGYTNTDwvptgnlkhdltR 594
                 778******98766665555555555 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   4.3e-05     0.077       4      39 ..     258     293 ..     257     294 .. 0.95
   2 ?   -2.7   0.0       3.6   6.4e+03      10      20 ..     314     324 ..     312     327 .. 0.73
   3 !   16.6   0.1   3.3e-06     0.006       5      41 ..     363     398 ..     361     399 .. 0.87
   4 !    6.9   0.0    0.0035       6.3       2      40 ..     420     473 ..     419     475 .. 0.84
   5 ?    2.6   0.2      0.08   1.4e+02       1      25 [.     486     517 ..     486     538 .. 0.68
   6 !   16.2   0.1   4.3e-06    0.0077       1      40 [.     553     605 ..     553     609 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.3e-05
     Kelch_5   4 pRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 +R+ h+a+++++ +Yv GG  + + +v+ d++ Ldl
  CDO71013.1 258 SRMAHAAFIYKSRLYVCGGQRSGTIQVYHDMWCLDL 293
                 8*********************9*********9998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.6
     Kelch_5  10 avtvsekiYvy 20 
                 +v+ ++k Y++
  CDO71013.1 314 MVVSGGKAYLF 324
                 67777888877 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3.3e-06
     Kelch_5   5 RaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 +++ ++ +v++kiYv+GGk   + ++++ + vLd+ +
  CDO71013.1 363 LTDYSMHAVNGKIYVFGGKH-KRYIGCNLFAVLDVAT 398
                 677788899***********.59999********987 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0035
     Kelch_5   2 PppRaghcavtvs..ekiYvyGGkv............g.rdgsvsddvyvLdlp 40 
                 P pR + ++++++  ekiY++ G+             + ++g v++d + +d++
  CDO71013.1 420 PGPRKNLASWVDEkgEKIYIMYGMAdrqaaqmfsqefAsSEGFVYNDCWSWDIK 473
                 999*********556*****9999989999998877636899999999988876 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.08
     Kelch_5   1 iPppRaghcavtvs..ekiYvyGGkv.....g 25 
                 +P+pRa  ++++ +   +  ++GG++     +
  CDO71013.1 486 YPCPRAEMSVCYNPvtKQTVMFGGYNpalpfY 517
                 59999999999988878889999999555551 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 4.3e-06
     Kelch_5   1 iPppRaghcavtvs..ekiYvyGGkv...........grdgsvsddvyvLdlp 40 
                 +P++Ra++   t++  + +Y++GG++           +    +++dv+ L + 
  CDO71013.1 553 FPTYRAQGQLLTDPatGRMYLFGGYTntdwvptgnlkHDLTRSYGDVWELRVD 605
                 69***********999**********999999866542778999999999665 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.8e-05      0.05       4      43 ..     261     303 ..     258     304 .. 0.87
   2 ?    0.5   0.0      0.26   4.7e+02       4      20 ..     311     327 ..     308     327 .. 0.85
   3 !   21.8   0.0   5.5e-08   9.9e-05       3      43 ..     364     405 ..     362     408 .. 0.93
   4 !    7.0   0.1    0.0023       4.2      11      40 ..     434     478 ..     433     480 .. 0.92
   5 ?    2.2   0.0     0.078   1.4e+02      12      22 ..     569     579 ..     568     593 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
                 SEEEEEETTEEEEEEEBCS..SSBEEEEEEEETT.TTEEEEEC CS
     Kelch_1   4 gagavvvggkiYviGGsdg..gnalssvevyDpe.tntWrelp 43 
                  ++a     ++Yv+GG+++   +  ++ +++D+   n Wrelp
  CDO71013.1 261 AHAAFIYKSRLYVCGGQRSgtIQVYHDMWCLDLIrMNGWRELP 303
                 5777788899**********************99888888888 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
                 SEEEEEETTEEEEEEEB CS
     Kelch_1   4 gagavvvggkiYviGGs 20 
                 ++ +vv ggk Y + G+
  CDO71013.1 311 NCQMVVSGGKAYLFRGF 327
                 8899********99886 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 5.5e-08
                 BSEEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   3 agagavvvggkiYviGGsdg.gnalssvevyDpetntWrelp 43 
                 + +++ +v+gkiYv+GG    +  ++ + v+D+ t+tWr+l+
  CDO71013.1 364 TDYSMHAVNGKIYVFGGKHKrYIGCNLFAVLDVATKTWRRLS 405
                 67899**********************************997 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0023
                 TTEEEEEEEBCS...............SSBEEEEEEEETTTTEEE CS
     Kelch_1  11 ggkiYviGGsdg...............gnalssvevyDpetntWr 40 
                 g+kiY++ G+ +               g   ++++ +D +++ W 
  CDO71013.1 434 GEKIYIMYGMADrqaaqmfsqefasseGFVYNDCWSWDIKEGRWQ 478
                 689999999999999999999999999999**************7 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.078
                 TEEEEEEEBCS CS
     Kelch_1  12 gkiYviGGsdg 22 
                 g++Y +GG+ +
  CDO71013.1 569 GRMYLFGGYTN 579
                 89*******87 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.9   5.2e+03      29      46 ..     243     264 ..     240     266 .. 0.73
   2 !   11.5   0.0   0.00016      0.29       2      35 ..     269     303 ..     268     308 .. 0.88
   3 ?   -3.3   0.0       6.9   1.2e+04       2      10 ..     312     320 ..     311     321 .. 0.83
   4 !    8.5   0.0    0.0014       2.4       1      35 [.     372     409 ..     372     423 .. 0.76
   5 ?    4.7   0.0     0.022        39      15      42 ..     461     491 ..     455     497 .. 0.79
   6 ?    2.7   0.0      0.09   1.6e+02       7      42 ..     507     558 ..     505     558 .. 0.74
   7 !    8.2   1.5    0.0017       3.1       2      33 ..     569     621 ..     568     632 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.9
     Kelch_3  29 ntWaei....aslppaRaghaa 46 
                 ++W+++    +s  + R+ haa
  CDO71013.1 243 GSWQRLkwadSSRLTSRMAHAA 264
                 6899999965555778988887 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00016
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtn.tWaeia 35 
                  rly+ GG + ++ ++++d++ +dl +   W+e++
  CDO71013.1 269 SRLYVCGGQRSGTIQVYHDMWCLDLIRMnGWRELP 303
                 58********777************9998998875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.9
     Kelch_3   2 drlyifGGl 10 
                 + ++++GG+
  CDO71013.1 312 CQMVVSGGK 320
                 689*****6 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0014
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei....a 35 
                 ++++y+fGG+   +  + n + v+d++t tW+++    +
  CDO71013.1 372 NGKIYVFGGKH-KRYIGCNLFAVLDVATKTWRRLsgtpD 409
                 578********.5555558888**********9864433 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.022
     Kelch_3  15 qdrlndvyvydldtntWa..ei.aslppaRa 42 
                 + ++nd ++ d+  + W+  ++ ++ p +Ra
  CDO71013.1 461 GFVYNDCWSWDIKEGRWQreRVsGNYPCPRA 491
                 6789**************7755677766665 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.09
     Kelch_3   7 fGGlgd............dgqdrlndvyvydldtn..tWaei..aslppaRa 42 
                 fGG+++             g ++ +d++v+d  ++   W+++  +s p++Ra
  CDO71013.1 507 FGGYNPalpfyvessqvcFGFNYFSDTFVLDHTAPmhRWKQVitPSFPTYRA 558
                 7777777777776333333444559999999999999***9999999*9996 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0017
     Kelch_3   2 drlyifGGlgd.....dgqdrl......ndvyvydldtn.......tWa...e 33 
                 +r+y+fGG++      +g+  +      +dv+++ +dt+        W+   +
  CDO71013.1 569 GRMYLFGGYTNtdwvpTGNLKHdltrsyGDVWELRVDTPgglfeevDWEderR 621
                 79********988988554444556666******9999877666555555554 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.042        75       2      35 ..     259     299 ..     258     302 .. 0.73
   2 ?    4.7   0.0     0.018        32       5      42 ..     312     340 ..     308     346 .. 0.84
   3 !    9.3   0.2   0.00064       1.2       9      47 ..     370     406 ..     365     408 .. 0.83
   4 ?    1.1   0.0      0.25   4.4e+02       4      26 ..     492     513 ..     489     531 .. 0.76
   5 ?    4.2   0.0     0.026        47      12      21 ..     569     588 ..     561     607 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.042
     Kelch_2   2 rgghsssvpggkiyvvGGa.......htdnpnlsssdvhvl 35 
                 r+ h++    +++yv+GG        ++d++ l  ++++ +
  CDO71013.1 259 RMAHAAFIYKSRLYVCGGQrsgtiqvYHDMWCLDLIRMNGW 299
                 77888888999*******87777777666666666655555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.018
     Kelch_2   5 hsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42 
                 + ++v+ggk y++ G+          +v ++dle+++W
  CDO71013.1 312 CQMVVSGGKAYLFRGF---------PTVDFFDLETERW 340
                 77999***********.........6666789999999 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00064
     Kelch_2   9 vpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevtp 47 
                  ++gkiyv+GG   +     ++ + vld  +++W++++ 
  CDO71013.1 370 AVNGKIYVFGGK--HKRYIGCNLFAVLDVATKTWRRLSG 406
                 579********9..8888888888889999999999875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.25
     Kelch_2   4 ghsssvp..ggkiyvvGGahtdnpn 26 
                  +s+++     +++++GG+   np 
  CDO71013.1 492 EMSVCYNpvTKQTVMFGGY---NPA 513
                 55555555566889*****...765 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.026
     Kelch_2  12 gkiyvvGGa..........h 21 
                 g++y++GG+           
  CDO71013.1 569 GRMYLFGGYtntdwvptgnL 588
                 899******44444444443 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  13.7     1e-06    0.0018       1      37 [.     631     669 ..     631     670 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
                 -TTT--.B-SCE-TT.TS.-SEESSHHHHHHCHHHHCCC CS
     zf-MYND   1 CavCgkaealkkCag.Ck.svfYCskeCqradwksHkte 37 
                 C +Cg   + kkC+g C+ +v+YC  +Cq++ w++Hk++
  CDO71013.1 631 CYKCGSVGVWKKCSGtCEgHVYYCTPNCQKEGWSEHKQK 669
                 99****88888**6549769*****************97 PP

>> RepA_N  Replication initiator protein A (RepA) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0042       7.5      49      66 ..      90     107 ..      87     116 .. 0.89
   2 ?    4.6   0.0     0.017        31      41      57 ..     428     445 ..     424     456 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0042
      RepA_N  49 vYliftieelaellncsk 66 
                 vYl+ft++e  + +nc++
  CDO71013.1  90 VYLNFTMDECITAMNCCN 107
                 9***************98 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.017
      RepA_N  41 nwiDeeg.rvYliftiee 57 
                  w+De+g ++Y+++ + +
  CDO71013.1 428 SWVDEKGeKIYIMYGMAD 445
                 6*****956*****8865 PP

>> DUF1572  Protein of unknown function (DUF1572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.29      57     108 ..      17      71 ..      12      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
     DUF1572  57 sRWtdflt.sdGekpdRnRDaefedalkskeelle..aweeGWelllsaldslke 108
                 + +t++l   d e + R RDae + a  ++e l++   ++e W  +++al++l  
  CDO71013.1  17 AAFTGYLIrLDQEAERRYRDAECKLASVQAEGLMRqnKFDEAWPKIVEALSHLVG 71 
                 556666653799*********************96337*************9965 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.5    0.0012       2.2      25      46 ..     650     671 ..     622     672 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
     zf-C6H2  25 esfFCsqeCFkknwkkHkalHk 46 
                 + ++C+ +C k+ w++Hk+ H+
  CDO71013.1 650 HVYYCTPNCQKEGWSEHKQKHN 671
                 379******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4517.84
//
Query:       CDO71014.1  [L=147]
Description: hypothetical protein BN946_scf184844.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1073.10
//
Query:       CDO71015.1  [L=561]
Description: hypothetical protein BN946_scf184844.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-08   34.2  10.3    1.1e-07   32.2  10.3    2.0  1  HMG_box    HMG (high mobility group) box
    3.5e-08   33.9   6.4    8.2e-08   32.7   6.4    1.6  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2  10.3   1.2e-11   1.1e-07       1      68 [.     127     204 ..     127     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.2e-11
                 --SS--HHHHHHHHH........HHHHHHHSTTS-..HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeq........raklkaenPelk..naeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 +kRp +a++lf+++q         ++ k+  P+ k   a++sk+++++Wk ls+ee++ +e+ a++ k+++   +p+y
  CDO71015.1 127 IKRPENAWILFRRKQvrdhnanaEEEEKETGPQKKrrQADLSKTISQQWKTLSQEERQYWEDLAKEKKKEHAMLYPNY 204
                 69**********9883222222234557778*9999999*************************************99 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   6.4   9.2e-12   8.2e-08       5      65 ..     128     197 ..     126     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 9.2e-12
                 -SS--HHHHHHHTTHHHHHHH........T--.-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHH CS
   HMG_box_2   5 kaarnAYalfvqemipelkrk........Gnp.viglaevsklcsekWkalseeeKekYeekAkedkkry 65 
                 k++ nA++lf +++   ++++        G +   + a+ sk +s++Wk+ls+ee++ +e+ Ake+kk+ 
  CDO71015.1 128 KRPENAWILFRRKQVRDHNANaeeeeketGPQkKRRQADLSKTISQQWKTLSQEERQYWEDLAKEKKKEH 197
                 8999********999999998889999999888999*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3675.31
//
Query:       CDO71016.1  [L=314]
Description: hypothetical protein BN946_scf184844.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.6   0.0    3.3e-10   40.4   0.0    1.7  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.096   12.6   0.0    2.1  1  HHH       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   3.6e-14   3.3e-10       1     101 [.      96     251 ..      96     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 3.6e-14
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 +++ilsq+ts  + +++   l ++fg  ++ ++a+a+ ++++++i++ G+ ++Ka  i+++ +++                                  
  CDO71016.1  96 IGTILSQNTSARNSTAAKRGLDAAFGRGNFAAIARAPRADVVDAIKTGGLANKKAAVIQNILQEVHqkhgvyslqhlaavadedvegkakasskvsnee 194
                 789***********************99*********************************************************************** PP

                 ........................S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHH CS
                 ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ........................gkpdvlivvDvhvrrilkrlrsikekktkkkvekk 101
                                         g+  + ++vD+hv r+ + l+++ +k ++  ++++
  CDO71016.1 195 vmqelvsyngvgpktascvllfclGR--ASFPVDTHVFRLSRLLGWVPQKADRVTAQAH 251
                 ************************87..56999**************998666555555 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.096      17      30 .]     203     216 ..     196     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                 TT-SHHHHHHHHHH CS
         HHH  17 PGVGpktAeaIlsy 30 
                  GVGpktA ++l +
  CDO71016.1 203 NGVGPKTASCVLLF 216
                 7**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2228.26
//
Query:       CDO71017.1  [L=246]
Description: hypothetical protein BN946_scf184844.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1717.96
//
Query:       CDO71018.1  [L=565]
Description: hypothetical protein BN946_scf184844.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-11   44.0   0.1    4.7e-11   43.0   0.1    1.6  1  HMG_box    HMG (high mobility group) box
  ------ inclusion threshold ------
      0.027   15.0   0.0      0.062   13.9   0.0    1.5  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   5.2e-15   4.7e-11       1      69 []      89     158 ..      89     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 5.2e-15
                 --SS--HHHHHHHHH.HHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeq.raklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 ++Rp++af+lf++   ra+      e + +++sk++g+ Wkal++ee++ +e+ka  + a+++k++p+++
  CDO71018.1  89 IPRPPNAFILFRSSFiRAQHIPGQIEGNHSALSKIIGKYWKALPREERQVWEAKAVVALAEHRKKYPDWR 158
                 68*********998637777777777889***************************************96 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.9e-06     0.062       6      59 ..      91     144 ..      90     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.9e-06
                 SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHH CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAk 59 
                 +++nA++lf    i      G+   + +  sk +++ Wkal+ ee++ +e kA 
  CDO71018.1  91 RPPNAFILFRSSFIRAQHIPGQIEGNHSALSKIIGKYWKALPREERQVWEAKAV 144
                 679******999998888887779999***********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3872.71
//
Query:       CDO71019.1  [L=376]
Description: hypothetical protein BN946_scf184844.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-57  189.7   0.0    4.7e-28   97.2   0.0    2.2  2  Thioredoxin    Thioredoxin
    2.3e-25   89.3   1.2      5e-25   88.2   1.2    1.6  1  ERp29          Endoplasmic reticulum protein ERp29, C-termina
    3.5e-18   66.0   0.0    2.1e-08   34.6   0.0    2.5  2  Thioredoxin_2  Thioredoxin-like domain
    3.1e-16   59.6   0.0    6.8e-07   28.9   0.0    2.2  2  OST3_OST6      OST3 / OST6 family, transporter family
    1.2e-10   41.6   0.0    0.00053   19.9   0.0    3.3  3  Thioredoxin_6  Thioredoxin-like domain
    5.7e-10   39.3   0.0    0.00043   20.4   0.0    2.4  2  Thioredoxin_7  Thioredoxin-like
    1.1e-09   38.5   0.0       0.01   16.2   0.0    3.7  4  Thioredoxin_8  Thioredoxin-like
    1.9e-08   34.3   0.0     0.0021   17.9   0.0    2.3  2  AhpC-TSA       AhpC/TSA family
    3.2e-06   26.9   0.2      0.027   14.2   0.0    2.3  2  Redoxin        Redoxin
    4.2e-05   23.5   0.0       0.21   11.4   0.0    2.5  3  TraF           F plasmid transfer operon protein
    0.00035   20.7   0.1      0.027   14.7   0.0    2.8  2  Glutaredoxin   Glutaredoxin
    0.00072   19.5   0.0       0.42   10.6   0.0    2.4  2  HyaE           Hydrogenase-1 expression protein HyaE
    0.00097   18.9   0.1       0.57   10.0   0.1    2.6  2  Thioredoxin_9  Thioredoxin
     0.0045   17.0   0.0       0.42   10.7   0.0    2.6  2  Thioredoxin_3  Thioredoxin domain
     0.0088   16.3   1.2      0.016   15.4   1.2    1.4  1  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
  ------ inclusion threshold ------
      0.039   14.1   0.5         14    5.8   0.1    3.1  3  Thioredoxin_4  Thioredoxin
      0.055   12.8   0.6      0.084   12.2   0.6    1.2  1  GAS            Growth-arrest specific micro-tubule binding
      0.061   13.7   0.0        6.7    7.2   0.0    3.2  3  DDE_Tnp_1_2    Transposase DDE domain
      0.094   12.3   0.2        1.4    8.6   0.1    2.4  2  DUF953         Eukaryotic protein of unknown function (DUF953
       0.17   11.5   0.1         11    5.6   0.0    3.4  4  Thioredoxin_5  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   5.2e-31   4.7e-28       2     102 ..      22     126 ..      21     127 .. 0.93
   2 !   90.4   0.1     7e-29   6.3e-26       8     102 ..     149     249 ..     143     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 5.2e-31
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT...TSEEEEEETTTS.HHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd...kvklakvdvden.edlakkyevegiPtlklfkngk.evkkyegarek 94 
                  vl+lt +nF+e+v k  k+ lveF+ApwCghCk+laP++e+la+++++   kv++akvd+d   + l +ky+v+g+Ptlk f ++  e++kyeg+r+ 
   CDO71019.1  22 VLELTPDNFDEHVGK-GKPALVEFFAPWCGHCKNLAPVYEQLADAFAHakdKVVIAKVDADGVgKPLGQKYGVTGFPTLKWFDADGgEPEKYEGGRDL 118
                  7899***********.****************************9988888**********873679*************9986555*********** PP

                  HHHHHHHH CS
  Thioredoxin  95 eklaaflk 102
                  e+la+f++
   CDO71019.1 119 EALANFVT 126
                  *****986 PP

  == domain 2  score: 90.4 bits;  conditional E-value: 7e-29
                  HHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTT..SHHHHHHTT-SSSSEEEEEETTE..EEEEEESS-HHHHHHH CS
  Thioredoxin   8 enFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvde..nedlakkyevegiPtlklfkngk..evkkyegarekeklaa 99 
                  ++F+e   +++k+v+v F+ApwCghCk+l+P +e++a++++   + ++a+vd+d+  n+ la+ky++ ++Pt+k+f++g+  e+ +y+gar++e++++
   CDO71019.1 149 HTFDEVALNPEKDVIVAFTAPWCGHCKRLKPIYEEVAKDFSSesNCVVANVDADAknNKPLAEKYGIGSLPTIKFFPKGNkdEPIDYDGARTEEAFVE 246
                  78***************************************99999****99886226789******************98999*************9 PP

                  HHH CS
  Thioredoxin 100 flk 102
                  fl+
   CDO71019.1 247 FLN 249
                  997 PP

>> ERp29  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   1.2   5.5e-28     5e-25       1      96 []     267     357 ..     267     357 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 5.5e-28
       ERp29   1 GrieeldelaaefvaaakaereelleeakkaaeklksekekkaaeyYvkvmekiaekgeeyvekElkRLekllkkgklaaekkdelkkrlNILsaF 96 
                 Gr+e+ld+la++f+++++a+r+ell+ea+++a++l      +aa++Y++vmek+++ +eey+ekE++RL+++l+k++l++ k+de+k++ NIL aF
  CDO71019.1 267 GRLEQLDKLASKFYEETAATRQELLKEATELAATLG-----DAAKHYLRVMEKVVNGSEEYLEKESNRLATILQKRTLSPGKLDEIKIKANILGAF 357
                 9***********************************.....9***************************************************999 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.1e-09     1e-06       3     103 ..      35     119 ..      33     125 .. 0.79
   2 !   34.6   0.0   2.4e-11   2.1e-08       5     108 ..     159     247 ..     155     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.1e-09
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.eivarlp 97 
                    g+gkp lv f +p+C+ Ck l  + ++l d   +      k++++++ v+ ++                l++kygv+g+Pt+  +d++  + ++++
     CDO71019.1  35 GKGKPALVEFFAPWCGHCKNLAPVYEQLADAFAH-----AKDKVVIAKVDADGVGK------------PLGQKYGVTGFPTLKWFDADgGEPEKYE 113
                    78**************************554333.....45555555555555554............59******************98888888 PP

  Thioredoxin_2  98 Gyvpae 103
                    G  + e
     CDO71019.1 114 GGRDLE 119
                    876655 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 2.4e-11
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgk.eivarlpG 98 
                    +k v+v ft+p+C+ Ck+lk   +e+    +      ++++++ ++++++ ++           n+ la+kyg+ ++Pti  f+ g+  +   + G
     CDO71019.1 159 EKDVIVAFTAPWCGHCKRLKPIYEEV---AKD-----FSSESNCVVANVDADAKN---------NKPLAEKYGIGSLPTIKfFPKGNkDEPIDYDG 237
                    799****************9988888...333.....566677777777777765.........588************98466666956567799 PP

  Thioredoxin_2  99 yvpaeeleal 108
                    + ++e + + 
     CDO71019.1 238 ARTEEAFVEF 247
                    9888888765 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.6e-10   6.8e-07      46     151 ..      49     143 ..      19     151 .. 0.89
   2 !   28.8   0.0   8.2e-10   7.4e-07      32     138 ..     161     253 ..     145     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.6e-10
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfde.gkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfisertgvkiri 143
                 C  C++++p +e++a+++ +     ++k++ akvd d  gk + qk+g++  P l  f + +g     ++++y+   gg d eala+f++ + gvk +i
  CDO71019.1  49 CGHCKNLAPVYEQLADAFAHA----KDKVVIAKVDADGvGKPLGQKYGVTGFPTLKWFDADGG-----EPEKYE---GGRDLEALANFVTTKSGVKSSI 135
                 9********************....49*********998999******************553.....557776...688******************* PP

   OST3_OST6 144 krppnysk 151
                 k pp  + 
  CDO71019.1 136 KPPPPPAY 143
                 99997655 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 8.2e-10
   OST3_OST6  32 svvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdf..degkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaea 128
                  v+v +Ta      C  C+ ++p +e vak + ++     ++ + a+vd   +++k + +k+g+ s+P + +fp  ++++   ++ +yd      + ea
  CDO71019.1 161 DVIVAFTAP----WCGHCKRLKPIYEEVAKDFSSE-----SNCVVANVDAdaKNNKPLAEKYGIGSLPTIKFFPK-GNKD---EPIDYDGA---RTEEA 243
                 577777777....6*******************99.....477778777732569******************98.4344...78888865...48899 PP

   OST3_OST6 129 lakfisertg 138
                 +++f++e+ g
  CDO71019.1 244 FVEFLNEKCG 253
                 *****99977 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0012       1.1      78     147 ..      21      93 ..      16      94 .. 0.81
   2 !   10.6   0.0   0.00042      0.38      35      75 ..      89     129 ..      83     131 .. 0.93
   3 !   19.9   0.0     6e-07   0.00053       7     121 ..     176     298 ..     173     313 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
                    SEEE-SHHHHHHHHTSS--EEEEEEE-TTSTTHHHHHHHH.HHHHHHT...TTT-EEEEEETTGGHHHHH.HTT- CS
  Thioredoxin_6  78 lvreltpenaeelfeeglppllllflkkddeeteklkkai.ekvakef...kdkinfaladaksfkrple.ylgl 147
                    +v eltp+n++e   +g+p+l+ +f +    ++ k ++ + e++a +f   kdk+ +a +da+ +++pl   +g+
     CDO71019.1  21 NVLELTPDNFDEHVGKGKPALVEFFAPW--CGHCKNLAPVyEQLADAFahaKDKVVIAKVDADGVGKPLGqKYGV 93 
                    689****************999999974..4555444443399999999999***********999888756665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00042
                    HHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH- CS
  Thioredoxin_6  35 dklgvke.pavllfrkfdeekvkydgekitvddlkkfiekns 75 
                    +k+gv++ p++++f ++  e++ky+g   + + l++f++++s
     CDO71019.1  89 QKYGVTGfPTLKWFDADGGEPEKYEGG-RDLEALANFVTTKS 129
                    79999999******************9.8*********9885 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 6e-07
                    THHHHHHHHTTT-T.T..SEEEEE--HH......HHHHTT--S.SEEEEEET.TTTEEEEEETHT--HHHHHHHHHHH---S..EEE-SHHHHHHH CS
  Thioredoxin_6   7 eeseiFekvakelkgd..vrfgvtkske......vadklgvke.pavllfrk.fdeekvkydgekitvddlkkfieknslpl..vreltpenaeel 90 
                    +++ i+e+vak+++++  + ++++ + +      +a+k+g+ + p++++f k + +e+++ydg+  t +  ++f+++++     v+ l ++++ +l
     CDO71019.1 176 RLKPIYEEVAKDFSSEsnCVVANVDA-DaknnkpLAEKYGIGSlPTIKFFPKgNKDEPIDYDGA-RTEEAFVEFLNEKCGTRrtVGGLLDDSVGRL 269
                    57889*********996666666543.35899999999************98345577777776.8************954433666666677776 PP

                    HTSS--EEEEEEE-TTSTTHHHHHHHHHHHH CS
  Thioredoxin_6  91 feeglppllllflkkddeeteklkkaiekva 121
                     + ++  l   f++++    ++l+k+ +++a
     CDO71019.1 270 EQLDK--LASKFYEETAATRQELLKEATELA 298
                    66663..366677666666666666666665 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.1e-06    0.0072      16      78 ..      36      99 ..      27     104 .. 0.79
   2 !   20.4   0.0   4.8e-07   0.00043      12      82 ..     154     225 ..     147     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.1e-06
                   HT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEE CS
  Thioredoxin_7 16 rgkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvv 78
                   +gkp lv f a wc++C+ l+ + ++  +  a +++k+v  +vd +   + +++ ++ +g+P++
     CDO71019.1 36 KGKPALVEFFAPWCGHCKNLAPVYEQLADAFAHAKDKVVIAKVDADGVGKPLGQKYGvTGFPTL 99
                   79************************988888799******99997666545443334556665 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 4.8e-07
                    HHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH..HT-EEEEESS--S-GGG.-TT---...SSEEEEE- CS
  Thioredoxin_7  12 kaaergkpvlvffgaswcftCqalerdflsdeevkaala..ekfvllrvdvterdanileldeqg...vPvvafld 82 
                    +a   +k+v+v f+a wc++C++l+   +  e+ k  ++  ++ v+ +vd + ++ +    +++g   +P++ f+ 
     CDO71019.1 154 VALNPEKDVIVAFTAPWCGHCKRLKPIYE--EVAKD-FSseSNCVVANVDADAKNNKP-LAEKYGigsLPTIKFFP 225
                    577779******************97554..44555.443689999999998888877.33444467799998875 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.1e-05      0.01       1      44 [.      37      81 ..      37      85 .. 0.91
   2 ?    3.1   0.0      0.14   1.2e+02      73      93 ..      86     106 ..      80     108 .. 0.85
   3 !   14.8   0.1   2.9e-05     0.026       4      48 ..     162     206 ..     159     213 .. 0.87
   4 ?    1.6   0.0      0.38   3.5e+02      63      86 ..     198     221 ..     197     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
                   .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHH.TTSEEEEEEE-S CS
  Thioredoxin_8  1 gkvvlLyfgaswcppckaftpklkelyeklkk.kkkveivyvsld 44
                   gk  l+ f+a wc +ck+  p   +l + + + k+kv+i  v  d
     CDO71019.1 37 GKPALVEFFAPWCGHCKNLAPVYEQLADAFAHaKDKVVIAKVDAD 81
                   5778999***********************9889***99888777 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
                    HHTT-S--TT-SEEEEE-TT- CS
  Thioredoxin_8  73 klkkkynvkaiPtlvvldkng 93 
                     l +ky+v+++Ptl + d +g
     CDO71019.1  86 PLGQKYGVTGFPTLKWFDADG 106
                    6789**********9999877 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2.9e-05
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HH CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkee 48 
                    v++ f a wc +ck+  p   e+ ++++ + ++++  v  d k++
     CDO71019.1 162 VIVAFTAPWCGHCKRLKPIYEEVAKDFSSESNCVVANVDADAKNN 206
                    8999************************88888888888887765 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.38
                    E.EE-TT-HHHHTT-S--TT-SEE CS
  Thioredoxin_8  63 svpfddkkrnklkkkynvkaiPtl 86 
                    +v+ d k+++ l++ky++ ++Pt+
     CDO71019.1 198 NVDADAKNNKPLAEKYGIGSLPTI 221
                    57788999**************95 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.4e-06    0.0021      24      70 ..      36      81 ..      24     112 .. 0.86
   2 !   14.0   0.0   3.9e-05     0.035      26      74 ..     160     207 ..     144     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-06
                TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSC CS
    AhpC-TSA 24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdsp 70
                kgkp+++ f++  wc +C++ +p +++l+++f++++ +v++  vd  
  CDO71019.1 36 KGKPALVEFFAP-WCGHCKNLAPVYEQLADAFAHAKDKVVIAKVDAD 81
                89**********.********************99988888887765 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.9e-05
                 SEEEEEEESTST-CCHHHHHHHHHHCHHHCC.CTTEEEEEEESSSCHHHH CS
    AhpC-TSA  26 kpvvlffypkdwcpvCttelpalaklyeefk.ergvevigvsvdspeshk 74 
                 k v++ f++  wc +C++  p +++++++f  e ++ v  v +d +   k
  CDO71019.1 160 KDVIVAFTAP-WCGHCKRLKPIYEEVAKDFSsESNCVVANVDADAKN-NK 207
                 5599999999.*******************96779999999888765.44 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-05     0.027      26      67 ..      35      76 ..      14     103 .. 0.80
   2 !   10.6   0.0   0.00037      0.33      27      82 ..     158     211 ..     146     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3e-05
                HTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEE CS
     Redoxin 26 fkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvva 67
                 kgk+++v f++  +c+ C++ +p y++  ++++++k+  v+a
  CDO71019.1 35 GKGKPALVEFFAP-WCGHCKNLAPvYEQLADAFAHAKDKVVIA 76
                69***********.**********7777778887777655554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00037
                 TTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH CS
     Redoxin  27 kgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndafvkefwgk 82 
                 ++k  v++++++ +c+ C++  p y+e  +++  ++  + v+ ++d da  ++ +++
  CDO71019.1 158 PEKD-VIVAFTAPWCGHCKRLKPiYEEVAKDF--SSESNCVVANVDADAKNNKPLAE 211
                 4566.66666666*******999555555666..55566777899999987777766 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00023      0.21     130     199 ..      38     102 ..      35     109 .. 0.78
   2 !    9.2   0.0    0.0011      0.98     133     203 ..     163     228 ..     155     236 .. 0.86
   3 ?   -3.1   0.1       6.1   5.5e+03      47      82 ..     289     322 ..     276     328 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
        TraF 130 eygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlv 199
                 + +L+ F+++ c+ c+ +ap+++++ad +  +   V + +   +++ +        +++gv+ +P+l  +
  CDO71019.1  38 KPALVEFFAPWCGHCKNLAPVYEQLADAFAHAKDKVVIAKVDADGVGK-----PLGQKYGVTGFPTLKWF 102
                 568999*********************998776666666665555444.....67779999999998665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
        TraF 133 LlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpks 203
                 ++ F ++ c+ c+ + pi++++a+++  e   V  +   +   +n   +k  a+++g+ + P++ ++ + +
  CDO71019.1 163 IVAFTAPWCGHCKRLKPIYEEVAKDFSSESNCVVANVDAD--AKN---NKPLAEKYGIGSLPTIKFFPKGN 228
                 6789999**********************99999999988..556...899************98877664 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.1
        TraF  47 keleelldkAilnPteenveaylrlqrvaldkaskF 82 
                 + l+e+ + A +    ++++ ylr+++ +++ ++++
  CDO71019.1 289 ELLKEATELAATL--GDAAKHYLRVMEKVVNGSEEY 322
                 3333333333322..456677777777777777666 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.14   1.3e+02       6      15 ..      46      55 ..      40      99 .. 0.80
   2 !   14.7   0.0     3e-05     0.027       1      53 [.     163     221 ..     163     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.14
                  STSSHHHHHH CS
  Glutaredoxin  6 kptCpyCkka 15
                   p+C++Ck+ 
    CDO71019.1 46 APWCGHCKNL 55
                  49*****985 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3e-05
                   EEEEESTSSHHHHHHHHHHHHTTGG......EEEEEGCCSHHHHHHHHHHHTSSSSSEE CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlLkelgvk......feeidvdkdeeireelkelsgvrtvPqv 53 
                   +v ft p+C++Ck+ k + +e   +        + +vd+d++  + l e+ g+ ++P++
    CDO71019.1 163 IVAFTAPWCGHCKRLKPIYEEVAKDfssesnCVVANVDADAKNNKPLAEKYGIGSLPTI 221
                   688*************9998887444444559999999999999999999999999988 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0097       8.7      50      90 ..      59     102 ..      50     107 .. 0.79
   2 !   10.6   0.0   0.00047      0.42      51      94 ..     182     228 ..     146     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0097
                 HHHHHCT-TTS-EEEEEE...THHHHHHHHHCCT-TSSSEEEEE CS
        HyaE  50 lpEllkaFpnalraavva...dreqeealaerfgvlktPsllfl 90 
                    l  aF +a++ +v+a    ++  + l++++gv+ +P+l  +
  CDO71019.1  59 YEQLADAFAHAKDKVVIAkvdADGVGKPLGQKYGVTGFPTLKWF 102
                 5678899*****9999994423456688************9766 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00047
                 HHHHCT-TTS-EEEEEE...THHHHHHHHHCCT-TSSSEEEEEETTE CS
        HyaE  51 pEllkaFpnalraavva...dreqeealaerfgvlktPsllflrdge 94 
                  E+ k F   ++++v++   d ++++ lae++g+   P++ f+ +g+
  CDO71019.1 182 EEVAKDFSSESNCVVANvdaDAKNNKPLAEKYGIGSLPTIKFFPKGN 228
                 6999********999865447888999****************9886 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.009         8      48      74 ..      44      70 ..      31     105 .. 0.85
   2 !   10.0   0.1   0.00064      0.57      40      68 ..     158     186 ..     145     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.009
                   E--TT-HHHHHHHHHHHHHHHH-TTEE CS
  Thioredoxin_9 48 ltedwCgDaavnvPvlakiaelnpnie 74
                   + ++wCg + +  Pv +++a++    +
     CDO71019.1 44 FFAPWCGHCKNLAPVYEQLADAFAHAK 70
                   5689*************9998765555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00064
                    -S-EEEEEE--TT-HHHHHHHHHHHHHHH CS
  Thioredoxin_9  40 ekklkilvltedwCgDaavnvPvlakiae 68 
                     +k  i+++t++wCg + +  P+ +++a+
     CDO71019.1 158 PEKDVIVAFTAPWCGHCKRLKPIYEEVAK 186
                    55667899**************9999886 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.076        68       6      53 ..      45      99 ..      41     123 .. 0.63
   2 !   10.7   0.0   0.00046      0.42       7      53 ..     168     221 ..     160     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.076
                   ESSSSTTCHHHHHHHHHHC....HCC.T.CECEEECCTTHHHH.HHCT-SSSSEE CS
  Thioredoxin_3  6 lgpgCakCpklekavkeaa....aek.g.ikaevekvtdfeei.ekygVmsvPal 53
                   + p C +C++l+ + +++a      k + + a+v+     + + +kygV+  P+l
     CDO71019.1 45 FAPWCGHCKNLAPVYEQLAdafaHAKdKvVIAKVDADGVGKPLgQKYGVTGFPTL 99
                   5677999995444444433000023323344455555566667899999998887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00046
                    SSSSTTCH....HHHHHHHHHCHCCT.CECEEECC.TTHHHH.HHCT-SSSSEE CS
  Thioredoxin_3   7 gpgCakCp....klekavkeaaaekg.ikaevekv.tdfeei.ekygVmsvPal 53 
                     p C +C+      e+++k    e++ + a+v+   ++++ + ekyg+ s P++
     CDO71019.1 168 APWCGHCKrlkpIYEEVAKDFSSESNcVVANVDADaKNNKPLaEKYGIGSLPTI 221
                    455*****4444445555555667777888998876888889**********98 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.2   1.8e-05     0.016      17     102 ..     250     338 ..     244     374 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-05
  Jnk-SapK_ap_N  17 dryg.eevvkgLmPkvVkvLElLeslasr.neeeeaeleelreeleqLeteyerekelrkra.eeeleeiedqweeerkelqekveqle 102
                    +++g + +v gL+   V  LE+L++las+ +ee  a+ +el +e ++L   + + +++  r  e+ +   e+ +e+e + l + +++ +
     CDO71019.1 250 EKCGtRRTVGGLLDDSVGRLEQLDKLASKfYEETAATRQELLKEATELAATLGDAAKHYLRVmEKVVNGSEEYLEKESNRLATILQKRT 338
                    6677456899*****************99456677789999999999999988877766555156667789999999999988877655 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.045        40      15      40 ..      39      64 ..      34      83 .. 0.83
   2 ?    5.8   0.1     0.015        14      14      41 ..     160     187 ..     157     197 .. 0.87
   3 ?   -0.7   0.0       1.5   1.4e+03     122     147 ..     199     226 ..     191     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
                   EEEEEEE-TT-HHHHHHHHHHHHHHH CS
  Thioredoxin_4 15 vtvieyedlrCphCakfeeeveklle 40
                     ++e+    C hC++++  +e+l  
     CDO71019.1 39 PALVEFFAPWCGHCKNLAPVYEQLAD 64
                   5699************9998888765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.015
                    SEEEEEEE-TT-HHHHHHHHHHHHHHHH CS
  Thioredoxin_4  14 pvtvieyedlrCphCakfeeevekllee 41 
                    + ++++++   C hC++++  +e++ ++
     CDO71019.1 160 KDVIVAFTAPWCGHCKRLKPIYEEVAKD 187
                    578**************99999888776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.5
                    -HHHHHHHHHHHHHHT--SS-EEEE..T CS
  Thioredoxin_4 122 ldalveaeskeakkagiestPtfii..n 147
                    +da++++++  a+k gi s Pt+    +
     CDO71019.1 199 VDADAKNNKPLAEKYGIGSLPTIKFfpK 226
                    567788888899**********976433 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   9.4e-05     0.084     101     185 ..     266     350 ..     254     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
         GAS 101 lkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqleevlaaanldpaalsavsek 185
                 + +l++ ++  ++ +e+  + r+el k+ ++   ++   ++    ++ek ++  +e lEk   +l+++l++  l p +l++++ k
  CDO71019.1 266 VGRLEQLDKLASKFYEETAATRQELLKEATELAATLGDAAKHYLRVMEKVVNGSEEYLEKESNRLATILQKRTLSPGKLDEIKIK 350
                 5667777777888899999*************************************************************99877 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0074       6.7      51      77 ..      41      67 ..      33      75 .. 0.87
   2 ?    2.2   0.0      0.25   2.3e+02      56      78 ..     168     190 ..     121     199 .. 0.73
   3 ?   -1.3   0.0       3.3     3e+03      55      79 ..     265     290 ..     262     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0074
  DDE_Tnp_1_2 51 vvErsfgwlkrrrslatryekLaense 77
                 +vE    w+ +++ la +ye+La+ + 
   CDO71019.1 41 LVEFFAPWCGHCKNLAPVYEQLADAFA 67
                 6888888****************9876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.25
  DDE_Tnp_1_2  56 fgwlkrrrslatryekLaenset 78 
                    w+ ++++l+  ye+ a+ + +
   CDO71019.1 168 APWCGHCKRLKPIYEEVAKDFSS 190
                  45999**********99987765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.3
  DDE_Tnp_1_2  55 sfgwlkrrrsla.tryekLaenseta 79 
                  s g+l+++ +la + ye++a +++ +
   CDO71019.1 265 SVGRLEQLDKLAsKFYEETAATRQEL 290
                  56888888888736689999988765 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.32   2.9e+02      37      65 ..      48      79 ..      45     105 .. 0.71
   2 ?    8.6   0.1    0.0016       1.4      36      67 ..     169     200 ..     159     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.32
                SSHHHHHHHHHHH...HHHHH-SS-EEEEEEE CS
      DUF953 37 WCPdCvkaepvie...ealkeapedvklvrvd 65
                WC  C +  pv e   +a+ +a   v++ +vd
  CDO71019.1 48 WCGHCKNLAPVYEqlaDAFAHAKDKVVIAKVD 79
                9****999998651114555555555555554 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0016
                 BSSHHHHHHHHHHHHHHHH-SS-EEEEEEE-- CS
      DUF953  36 sWCPdCvkaepvieealkeapedvklvrvdvG 67 
                  WC  C +  p+ ee+ k+++++++ v+++v 
  CDO71019.1 169 PWCGHCKRLKPIYEEVAKDFSSESNCVVANVD 200
                 5********************99988888774 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.94   8.4e+02       3      23 ..      44      64 ..      43      78 .. 0.82
   2 ?    0.2   0.0      0.56     5e+02     151     169 ..      89     107 ..      85     121 .. 0.79
   3 ?   -0.9   0.1       1.2   1.1e+03       3      18 ..     166     181 ..     165     190 .. 0.83
   4 ?    5.6   0.0     0.012        11     139     184 ..     195     244 ..     181     246 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.94
  Thioredoxin_5  3 FidPlcseCweiEpelkklkv 23
                   F+ P+c +C ++ p   +l +
     CDO71019.1 44 FFAPWCGHCKNLAPVYEQLAD 64
                   899******999998888765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.56
  Thioredoxin_5 151 kemgvtevPtlvffnenee 169
                    + +gvt +Ptl  f+++  
     CDO71019.1  89 QKYGVTGFPTLKWFDADGG 107
                    6799**********96544 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
  Thioredoxin_5   3 FidPlcseCweiEpel 18 
                    F+ P+c +C +++p+ 
     CDO71019.1 166 FTAPWCGHCKRLKPIY 181
                    999******9998875 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.012
  Thioredoxin_5 139 akkafqcDlk....lakemgvtevPtlvffneneeeeglkveglksyevy 184
                    ++ + ++D k    la+ +g+ ++Pt+ ff + +++e +  +g  + e +
     CDO71019.1 195 VVANVDADAKnnkpLAEKYGIGSLPTIKFFPKGNKDEPIDYDGARTEEAF 244
                    4555555554444499********************99998888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.70u 0.38s 00:00:01.08 Elapsed: 00:00:00.62
# Mc/sec: 1842.04
//
Query:       CDO71020.1  [L=295]
Description: hypothetical protein BN946_scf184844.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-51  174.2   0.0      4e-51  173.8   0.0    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    2.4e-47  160.9   0.0      3e-47  160.6   0.0    1.1  1  adh_short      short chain dehydrogenase
      5e-06   26.5   0.0    6.9e-06   26.1   0.0    1.2  1  KR             KR domain
     0.0015   17.1   0.1     0.0022   16.7   0.1    1.2  1  MM_CoA_mutase  Methylmalonyl-CoA mutase
     0.0017   17.7   0.0     0.0038   16.6   0.0    1.5  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
      0.015   15.1   0.4          1    9.1   0.1    2.8  3  DFP            DNA / pantothenate metabolism flavoprotein
      0.024   14.0   0.0      0.031   13.6   0.0    1.2  1  DUF1776        Fungal family of unknown function (DUF1776)
       0.13   12.3   0.0       0.23   11.5   0.0    1.4  1  OTCace         Aspartate/ornithine carbamoyltransferase, Asp/


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.0   1.8e-54     4e-51       4     228 ..      63     289 ..      58     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.8e-54
                   TSHHHHHHHHHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea...kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   sgIGra+A ++a+eGa+v ++ l ee+   +++++++++e+++ + ++ + +d ++ ++++++ v++fg++Dilvnna   +  +++f+e++ + ++
    CDO71020.1  63 SGIGRAVAILFAREGADVTIVHLPEEQkdaDDTIRAIQREGQKGLsIAFNLEDFKNAKSIIDRHVAEFGRIDILVNNASKQRM-TEDFAEIDLDAVE 158
                   8***********************9996545677888888777767*********************************9998.************* PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                    +++ n+  +f+++k alp+m +g+si+n++sv   r+ ++   y  +K+a++++tr+lA++l +kgiRvNav+pgp++T+++ + +   e +e + 
    CDO71020.1 159 STFKSNILQMFAMTKFALPHMPKGSSIINTTSVTTFRGSSSMPDYVSTKGAIVGFTRALAKDLTKKGIRVNAVAPGPVHTPLQPASR-PAEQMEGFG 254
                   **********************************************************************************77665.77888999* PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEE CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlv 228
                   +++ +gr g+p+e+a  ++fLas ea+   Gq+l+
    CDO71020.1 255 SKSQIGRPGQPSEIAPSYVFLASAEAELYYGQILH 289
                   ********************************997 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   1.3e-50     3e-47       1     193 [.      54     247 ..      54     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 1.3e-50
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 k +++tG++sGIGra+a  +a+eGa+v++  + ++++++  ++  +++eg+k l i+++++d ++++ ++++ v+++g++d+LvnNA+    +++f+e+
  CDO71020.1  54 KKAIITGGDSGIGRAVAILFAREGADVTIvhLPEEQKDADDTIRAIQREGQKGLSIAFNLEDFKNAKSIIDRHVAEFGRIDILVNNASKqRMTEDFAEI 152
                 689************************99455577788999************************************************777899**** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 + +++e++++ N+  +f +t+ +lp+m   ++ +I+n++Sv+++ ++ +++ Y ++K+a++g+tr+lak+l ++girvnavaPG+v T+++ ++r++
  CDO71020.1 153 DLDAVESTFKSNILQMFAMTKFALPHMP--KGSSIINTTSVTTFRGSSSMPDYVSTKGAIVGFTRALAKDLTKKGIRVNAVAPGPVHTPLQPASRPA 247
                 **************************99..7789********************************************************9888765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.1e-09   6.9e-06       4     177 ..      57     235 ..      55     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.1e-09
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklleemt 101
                 +itGG  g+G+++a   a++ga   ++   +  +++d++++i+++++ g +   +a  + d ++ ++++++  ae+++i   ++ A   r ++ ++e +
  CDO71020.1  57 IITGGDSGIGRAVAILFAREGADVTIVHLPE--EQKDADDTIRAIQREGQKGLSIAFNLEDFKNAKSIIDRHVAEFGRIDILVNNASKQRmTEDFAEID 153
                 8********************8776666666..56777889******************************************99988775889***** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHH....HHHHHHHHHHHHHHHTEEEEEE-- CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaN....aflDalaeyrrsqglpavsinwgl 177
                  +++e+ +++ +  +  + ++  +   +   ++ ++S+ ++ gs    +Y ++      f  ala+  +++g ++ +++ g+
  CDO71020.1 154 LDAVESTFKSNILQMFAMTKFALPhmPKGSSIINTTSVTTFRGSSSMPDYVSTKgaivGFTRALAKDLTKKGIRVNAVAPGP 235
                 **********999999998877665667788999999999999999999987752222577777777788887777777666 PP

>> MM_CoA_mutase  Methylmalonyl-CoA mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   9.7e-07    0.0022      57     139 ..      89     171 ..      79     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.7e-07
  MM_CoA_mutase  57 aeetnerykklLeaGqtglsvafdlptlrgyDsdhpraegevGkaG..vaidsledmetlldgidldkvsvsmtinaaalpllam 139
                     +++  ++++   +Gq+gls+af+l+      s  +r ++e G+    v+ +s + m + +++idld+v+ +++ n   l+++am
     CDO71020.1  89 QKDADDTIRAIQREGQKGLSIAFNLEDFKNAKSIIDRHVAEFGRIDilVNNASKQRMTEDFAEIDLDAVESTFKSNI--LQMFAM 171
                    5677888999999*************99999999999999***9995567778899**************9996664..444444 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.7e-06    0.0038      33      69 ..      50      86 ..      47     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TT CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsk 69
                   +l+gkk+++ G  + +g+++a+l+++++a Vt++h  
     CDO71020.1 50 KLKGKKAIITGGDSGIGRAVAILFAREGADVTIVHLP 86
                   689*******************************964 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00047         1      31      67 ..      65     102 ..      56     123 .. 0.73
   2 ?    2.7   0.1     0.044        98     121     176 ..      92     145 ..      88     157 .. 0.68
   3 ?    1.8   0.0     0.081   1.8e+02      33      57 ..     215     240 ..     212     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00047
                 HHHHHHHHHHHTT-EEEEEE-S-SS--.-TT-EEEE-- CS
         DFP  31 mGyalAeaaaarGaeVtlvsgpvslet.pegvevvkve 67 
                  G a+A  +a++Ga+Vt+v+ p + ++  ++++ ++ e
  CDO71020.1  65 IGRAVAILFAREGADVTIVHLPEEQKDaDDTIRAIQRE 102
                 599*******************7555414456666655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.044
                 ---HHHHHHHC-S.S-EEEEEEE-S.S-HHHHHHHHHHH.TT-SEEEEEEGGGTTGGG CS
         DFP 121 npdilaelaekkkkkqllvGFaaet.eellenarekler.kgldlivaNdvskeeagf 176
                   d ++ ++ ++ +k l ++F +e+ +++ +   + +++  ++d++v N  +++   +
  CDO71020.1  92 ADDTIRAIQ-REGQKGLSIAFNLEDfKNAKSIIDRHVAEfGRIDILVNNASKQR---M 145
                 578888884.4455569*******987777776666555156788877776654...3 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.081
                 HHHHHHHHHTT-EEEEEE.-S-SS-- CS
         DFP  33 yalAeaaaarGaeVtlvs.gpvslet 57 
                  alA+ + ++G +V+ v+ gpv+++ 
  CDO71020.1 215 RALAKDLTKKGIRVNAVApGPVHTPL 240
                 58***************757776654 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05     0.031     108     196 ..     149     232 ..      83     250 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
     DUF1776 108 ietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqik 196
                 +++i l++++s++++++l+++++++  lp++ +        i+ ++s++        +  + + +a+  ++++L+++l +++i v  + 
  CDO71020.1 149 FAEIDLDAVESTFKSNILQMFAMTKFALPHMPK-----GSSIINTTSVTTFRGSSSMPDYVSTKGAIVGFTRALAKDLTKKGIRVNAVA 232
                 789****************************96.....334566677776666666666677899999999999999999999987765 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.23       1     100 [.      52     153 ..      52     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                 CC.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TT.SSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTC......CGGHHHH CS
      OTCace   1 kglkiafvGdkknnvanslikllarlgmdvvlvaPkg.lepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmge......ekereer 92 
                 kg+k  + G+  + + +++++l+ar g+dv++v+ ++  ++  ++++ ++ +  ++g si ++    e +k+a  ++ + ++++g       ++++++ 
  CDO71020.1  52 KGKKAIITGG-DSGIGRAVAILFAREGADVTIVHLPEeQKDADDTIRAIQRE-GQKGLSIAFN---LEDFKNAKSIIDRHVAEFGRidilvnNASKQRM 145
                 5777777774.478999****************9666366666666666665.4677777776...488999999999999999998888864444455 PP

                 HHHHCCCS CS
      OTCace  93 lkklkdyq 100
                  ++++++ 
  CDO71020.1 146 TEDFAEID 153
                 55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.55
# Mc/sec: 1609.40
//
Query:       CDO71021.1  [L=614]
Description: hypothetical protein BN946_scf184844.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.2e-103  344.4   5.0   8.3e-103  344.0   5.0    1.1  1  tRNA-synt_1d  tRNA synthetases class I (R)
    4.2e-22   78.6   0.0    9.5e-22   77.4   0.0    1.7  1  DALR_1        DALR anticodon binding domain
     0.0011   19.0   0.1     0.0055   16.8   0.0    2.2  2  HemN_C        HemN C-terminal domain
  ------ inclusion threshold ------
       0.17   11.8   3.7        0.4   10.6   3.7    1.6  1  DUF4880       Domain of unknown function (DUF4880)


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.0   5.0  1.9e-106  8.3e-103      15     349 .]     152     480 ..     141     480 .. 0.96

  Alignments for each domain:
  == domain 1  score: 344.0 bits;  conditional E-value: 1.9e-106
                   --SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCHHHHHHHHCCCS CS
  tRNA-synt_1d  15 ksrekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeafykeakkdydee 111
                    ++e k+v++++ssPniak +hvGhLrstiiG ++++l+ + G++vi +n++GDWGtqfGl+++++ek++ +++l++  +q+L+++y++++ + +++
    CDO71021.1 152 YLGEGKRVIIEYSSPNIAKSFHVGHLRSTIIGAFLANLYKACGWEVISMNYLGDWGTQFGLIAVGFEKYGSQEALEKDAIQHLFEIYVKVNAEAEKD 248
                   57899******************************************************************************************** PP

                   HCCCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC.--CC.CCCCCHHHHHHHHHCTT-EEECTTCEEEEECCCTSSCCE.EC CS
  tRNA-synt_1d 112 eifaerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie.rGes.lykeslneivkelkkkglvkesdGalvvfldefgkrlgv.vv 205
                     + e+a  +++++++gde+  k w+   +++ +++++ ydrl+v      Ges + +es+++++k+l++ +l++e++Gal v l+++  +lg  vv
    CDO71021.1 249 PSIREQAAAWFKRMEDGDEEALKNWRVWRQLSIRKYSEEYDRLNVHFDVyTGESeVPQESMDKALKQLQELNLIEEDNGALRVNLEKY--KLGKaVV 343
                   *********************************************874459***********************************66..899889* PP

                   C-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTT.TSEEEEEEE--EE-TTSSBSBCSSSTC-BHHHHHHHHHHH CS
  tRNA-synt_1d 206 qksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpe.skdlehanfGmvlgkdkkkfktrkGetvkLadlLdealer 301
                   +k+DG+ +y+t+Di+ a +r+++ k+dk++yvi+++q++h+ q+f +l  +g+  + +k+leh n+G+vlg     ++trkG +v+L++++ ea   
    CDO71021.1 344 RKRDGTSIYLTRDIGGAVQRYNKYKFDKMIYVISAQQDMHVAQFFKVLELMGF--DwAKNLEHVNYGLVLG-----MSTRKGIVVFLDQIIREAAAV 433
                   *****************************************************..549***********76.....9*****************987 PP

                   HHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE--H CS
  tRNA-synt_1d 302 alqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifdw 349
                     +  + kn+dk    +++e+vae +g++ ik++D+  +rin+y f+w
    CDO71021.1 434 MHE-QMKKNEDKYNAIEDPEHVAEEIGITGIKIQDMAAKRINNYTFNW 480
                   666.78899999***********************************9 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   2.1e-25   9.5e-22       1     119 []     494     614 .]     494     614 .] 0.97

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 2.1e-25
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCC..S-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealal..leeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLv 97 
                 +qyah+R++si rk+ e  +  ++++l +  l e++ +e++  l  +p+v+++a++++ep+ ++++++ L++++++ ++ + v +e+++++a+aR+aL 
  CDO71021.1 494 LQYAHVRLSSIGRKNPELLPLPAPAQLRTdlLVEPQAREIVFLLGSYPDVVKTALKTHEPSGIVTFAFRLSHAISSAWETVIVKGEQDKDKAKARMALY 592
                 6******************9888888877978888**************************************************************** PP

                 HHHHHHHHHHHHHTT----S-- CS
      DALR_1  98 kavrqvLangLdlLGieapekm 119
                  a+r vL  +L+lL i+++e+m
  CDO71021.1 593 LAARDVLGAALRLLSIRPLERM 614
                 *********************9 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.86   3.8e+03      25      52 ..      83     108 ..      78     109 .. 0.71
   2 !   16.8   0.0   1.2e-06    0.0055      25      62 ..     294     333 ..     292     334 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.86
      HemN_C  25 afeqrfgldleellaaaleklqeqGLLe 52 
                 +f+ + ++d  +l +++++k+q + ++e
  CDO71021.1  83 RFKLKANID--DLAKQVIDKFQPDDWIE 108
                 555555565..55689999999998876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.2e-06
      HemN_C  25 afeqrfgld..leellaaaleklqeqGLLeldggrlrltp 62 
                 +f  ++g++   +e+  +al++lqe +L+e d+g lr++ 
  CDO71021.1 294 HFDVYTGESevPQESMDKALKQLQELNLIEEDNGALRVNL 333
                 57778888888889999********************985 PP

>> DUF4880  Domain of unknown function (DUF4880)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.7   8.9e-05       0.4       1      28 [.     253     278 ..     253     282 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.9e-05
     DUF4880   1 eqAaaWlvrLrsgeasaadraafqaWla 28 
                 eqAaaW+ r+ +   +++    ++ W++
  CDO71021.1 253 EQAAAWFKRMED--GDEEALKNWRVWRQ 278
                 8*********99..69999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 3595.16
//
Query:       CDO71022.1  [L=297]
Description: hypothetical protein BN946_scf184844.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-128  426.8   2.1   4.2e-128  426.2   2.1    1.3  1  MIOX      Myo-inositol oxygenase
    0.00031   21.0   0.0      0.014   15.7   0.0    2.5  2  HD        HD domain


Domain annotation for each model (and alignments):
>> MIOX  Myo-inositol oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.2   2.1  4.7e-132  4.2e-128       1     249 []      51     297 .]      51     297 .] 1.00

  Alignments for each domain:
  == domain 1  score: 426.2 bits;  conditional E-value: 4.7e-132
        MIOX   1 kdrvkefykeqhtkqtvdfvkkkrkefkkkkrakmtiwealellnelvdesdPdvdlsqiehllqtaeairkdypdkdWlqltglihdlGkvlllfkae 99 
                 +drvk+fy+eqh+kqt++f+ + r+efkk+ +a+m+iwea+e+ln+lvd+sdPd++lsqiehllqtaeair+d ++++W+q++gl+hdlGk+l++f++e
  CDO71022.1  51 CDRVKNFYREQHEKQTFEFNVRVRAEFKKTVHARMGIWEAMEKLNTLVDDSDPDTSLSQIEHLLQTAEAIRRD-GKPEWMQVAGLVHDLGKLLYFFGSE 148
                 68***********************************************************************.************************* PP

        MIOX 100 pqWavvGdtfpvGckfsesivykesfkenpdlkdekyntklGiykencGldnvllswghdeylykvlkenkstlpeealamiryhsfypwhkegaykhl 198
                 +qW+vvGdtf+vGckfse+i+y+e+f++npd++d++y+t++G+y+++cGl+nv+lswghdeyly+vlk ++s+lp +al+miryhsfypwh+egay+hl
  CDO71022.1 149 GQWDVVGDTFVVGCKFSEKIIYPETFANNPDSRDPVYSTEYGVYSPHCGLENVMLSWGHDEYLYHVLK-KQSSLPMDALYMIRYHSFYPWHREGAYSHL 246
                 ********************************************************************.89**************************** PP

        MIOX 199 mnekdeellkavkafnkydlyskseekpdveelkPyyqelidkylpeklkw 249
                 +n +d+++l+av+afn+ydlysks+e++dve++kPyyq+li+ky+p++++w
  CDO71022.1 247 TNAEDQRALEAVRAFNPYDLYSKSDEPVDVEKVKPYYQSLIAKYFPDVIEW 297
                 **************************************************9 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06     0.014       8      43 ..     116     144 ..     106     176 .. 0.74
   2 ?    2.6   0.0     0.017   1.5e+02      58      98 ..     206     243 ..     191     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHT CS
          HD   8 VaklarrlaedlgeeedrellllaaLlHDiGkgpfg 43 
                 +a+        + ++ ++e+ ++a+L HD+Gk +  
  CDO71022.1 116 TAE-------AIRRDGKPEWMQVAGLVHDLGKLLYF 144
                 333.......3333468999************9855 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH.HHHHHHH CS
          HD  58 aHekvgaeilrevekrlgldledvaklirehhes.wegkkrp 98 
                 +H ++ + +l++   ++    +d++ +ir+h++  w +++++
  CDO71022.1 206 GHDEYLYHVLKKQSSLP----MDALYMIRYHSFYpWHREGAY 243
                 58999999999999999....789999999987504444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 1842.49
//
Query:       CDO71023.1  [L=412]
Description: hypothetical protein BN946_scf184844.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-11   45.4   0.5    1.8e-11   44.9   0.5    1.2  1  Metallophos    Calcineurin-like phosphoesterase
    5.9e-06   26.6   0.0    3.8e-05   23.9   0.0    2.2  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.5     2e-15   1.8e-11       2     202 ..      72     241 ..      71     243 .. 0.62

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2e-15
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEE.EEEC-TTS......CHHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipv.ylllGNHe......gfeeellnkygylgifs 92 
                  ri++i+D H         ++++ +  l+     d++++aGDl++ g   + + e l++l + p+p+ ++++GNH+        +e++l  y++l +  
   CDO71023.1  72 RIVCISDSH---------NAQDRIPALP---PGDILIHAGDLTHWGTERE-IHEALRWLNAAPHPHkVFIAGNHDsalaipERRESILAAYPDLIYLE 156
                  899999999.........4444444444...55*************6555.8888888888877778********55544322223333333333333 PP

                  HHHEHHHCEEETSEEEEEETTE...EEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHH CS
  Metallophos  93 epwrsdaevfnnlplaslgsgs...lkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedl 187
                  +   + + ++  l l++   ++     v+ +++g                        + +++      + +++i+++H p+     ++ g+ +   l
   CDO71023.1 157 DSSTTVTVYGRKLTLFGSPRTPrrgSGVFMYPHG------------------------EAMWEI-----PPETDILITHGPPK-FHLDVGGYGCDQLL 224
                  3333334444444444433333444444444444........................999999.....999***********.55555555555522 PP

                  HHHTT..ESEEEEESSS CS
  Metallophos 188 lkkyg..vdlvisGHtH 202
                  +  ++  + l ++GH+H
   CDO71023.1 225 QSLWKirPRLHVFGHIH 241
                  33333337899****** PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.2e-09   3.8e-05       2     128 ..      72     241 ..      72     248 .. 0.69
   2 ?   -2.5   0.0      0.57   5.1e+03     132     162 ..     291     321 ..     288     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.2e-09
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl..eeeepevleellela.....pvlaVrGNnD.................eevveedvlre 73 
                    +++ iSD+H++ d+++a++        d +ihaGDl   ++e e++e+l+ l+       + + GN+D                 + +  ed +  
     CDO71023.1  72 RIVCISDSHNAQDRIPALPPG------DILIHAGDLthWGTEREIHEALRWLNaaphpHKVFIAGNHDsalaiperresilaaypDLIYLEDSSTT 161
                    5889*****777777776665......9*******987455554555444444557977789******8777777777777666422244444444 PP

  Metallophos_2  74 aaelgtdl..................p.eeaelel.agekvlliHgdpl....gvkdalaellkeaeegsd.vvvcGHtH 128
                     + +g++l                  p  ea  e+ +++++l++Hg p+     + ++ ++ll++ ++ +  + v+GH+H
     CDO71023.1 162 VTVYGRKLtlfgsprtprrgsgvfmyPhGEAMWEIpPETDILITHGPPKfhldVGGYGCDQLLQSLWKIRPrLHVFGHIH 241
                    4444444477777777777777777755777778767777******98899995556666666665555555*******9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.57
  Metallophos_2 132 vekeggvlvvnPGsvgeprdgdpetyaildt 162
                    +++  g+++vn+   g+p dg+ e+++++d+
     CDO71023.1 291 ARASSGTILVNASWWGQPEDGSAEGAVVVDI 321
                    56678999****9999**9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2545.97
//
Query:       CDO71024.1  [L=535]
Description: hypothetical protein BN946_scf184844.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   47.9   0.2    2.7e-12   46.9   0.2    1.6  1  HMG_box    HMG (high mobility group) box
     0.0005   20.6   0.0     0.0011   19.5   0.0    1.6  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.2   3.1e-16   2.7e-12       1      69 []      89     158 ..      89     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 3.1e-16
                 --SS--HHHHHHHHH.HHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeq.raklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 ++Rp++af+lf+    r+k +    e +   +sk++g+ W+al+ eeK+ +e +a+k+ka +++++p+y+
  CDO71024.1  89 IPRPPNAFMLFRANFvRQKHVPGSIETNHGSLSKIIGNCWRALPLEEKRTWEIAAKKAKAAHKEKYPNYR 158
                 68*********9886266777777788899***************************************6 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07    0.0011       6      71 ..      91     156 ..      90     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                 SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS- CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealt 71 
                 +++nA++lf  +   +    G+   + +  sk +++ W+al+ eeK  +e  Ak+ k++ ++  ++
  CDO71024.1  91 RPPNAFMLFRANFVRQKHVPGSIETNHGSLSKIIGNCWRALPLEEKRTWEIAAKKAKAAHKEKYPN 156
                 679******99888888888999**********************************998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 2964.57
//
Query:       CDO71025.1  [L=575]
Description: hypothetical protein BN946_scf184844.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-78  264.7  37.5    1.7e-78  264.4  37.5    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.4  37.5   9.4e-83   1.7e-78       1     423 [.      84     529 ..      84     534 .. 0.89

  Alignments for each domain:
  == domain 1  score: 264.4 bits;  conditional E-value: 9.4e-83
  AA_permease_2   1 lsllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpv 91 
                    l+ +s ++l++g++ig+gif ++     +++s+g++l+lwv+++vl +  ++l++ +E+++++prsgG++vy++a+++k+    +++f++ a++++
     CDO71025.1  84 LGVFSCTLLIVGRIIGTGIFSTPssilgSVGSVGASLMLWVLGFVLSF--CGLFIWLEFGTMFPRSGGEKVYLEAVYKKPKHLATVIFATNAIILG 177
                    7899***************************************99997..8******************************************997 PP

  AA_permease_2  92 l.asilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..stetdtffp 184
                    + as+++v+a+++l  +g +   ++w t++ia +++ +v+l++ + ++ + ++ n l i+ki ++l+++++ g+++++g++       +  + f +
     CDO71025.1 178 FtASGCIVFAQNILITAGHT--ADRWVTRGIALGVIGFVTLLHGLTPRLGVWVMNGLSIFKI-VILLFVVVSGWVVLSGHTRVPDphANFRHAFAG 270
                    62667**********98843..679*************************************.699***********9998864443333333444 PP

  AA_permease_2 185 ngwpg..vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiiv 276
                    + +++  ++ + + vl +++G++++++v++ vk+  +++++a+++gl+i++vly+l ni+++++ +++ei++++   +va+lff++v+g  ++ ++
     CDO71025.1 271 SSNSSndYATATFKVLNAYAGWSNVNYVLNNVKNpvRTLKIAGPLGLSICAVLYILANISYFAAATKEEITKSGV--TVASLFFKNVFGAKAQKAL 364
                    444445459999**********************999**********************************9665..58***************** PP

  AA_permease_2 277 vilialsllg..........aintavigssrvlealardgv.lP...rffakvn.kfgspiraiiltaivslillllfllas..saaynfllsvss 355
                     +++als+lg          +++t++++++r++++la++g+ lP   rf+a+ +   +sp+ ++i+++i s+i++  +  a+    ay f+l+v  
     CDO71025.1 365 TVFVALSALGdlaevnsvlqNVITVTFAAARINQELAKEGIpLPfgnRFWASNWpTGKSPLPGLIIHLIPSVIVI--I--APppQVAYPFILDVEG 456
                    ******99999999999999********************9555**********88899************6653..3..3335************ PP

  AA_permease_2 356 lgliisyllliigalilrkkrphlkr.pgki.lvaiigalfllfllvalffppkgpa..tqssliyt.iiltv 423
                    ++  i++++++ig+++lr+++p+ +r ++ + ++a +++  ++fll+a+f+pp++ +  t++  +y+ +++ +
     CDO71025.1 457 YPGQIINFFIVIGLFWLRWRKPNVPRpFKVWlPLAVFFLAAAIFLLIAPFLPPANGKgdTPPLPYYLyCLVGI 529
                    ************************995555679*********************9984455556666644333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.52
# Mc/sec: 3325.71
//
Query:       CDO71026.1  [L=559]
Description: hypothetical protein BN946_scf184844.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-74  249.0  38.0    9.2e-74  248.8  38.0    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8  38.0   5.1e-78   9.2e-74       9     420 ..      86     510 ..      82     518 .. 0.89

  Alignments for each domain:
  == domain 1  score: 248.8 bits;  conditional E-value: 5.1e-78
  AA_permease_2   9 lvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas.ilsv 98 
                    +++g++ig+gif ++     +++s+g++l+lwv++++l    ++l++ +E+++++prsgG++vy++a+++k+    +++++ ++++++l++ +++v
     CDO71026.1  86 VSVGRIIGTGIFSTPssilgSVGSVGASLVLWVLGSILSA--CGLFIWLEFGTMFPRSGGEKVYLEAVYKKPKHLSTYIYASYSILLGLTApGCIV 179
                    789****************9**************999998..8**************************999999999999*******98867*** PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.stetdtffpngwpg...v 190
                    +as++l+a+g +   ++w t++ia++ +++v+l++ + ++ +  i n l ++ki l+l++++++g++++ g+++    + +  + f++ +++   +
     CDO71026.1 180 FASNILQAAGHE--ATRWNTRGIAVGTITFVVLLHGLTPRLGVFIMNGLSVFKI-LVLLFVVVTGWVVLAGKTAVKDsQANFRNAFAGSSSSsndY 272
                    ********9965..799*************************************.799*************9998654334444555544443555 PP

  AA_permease_2 191 llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsl 284
                    + +++ v++s++G++++++v++ vk   +++++a+++gl+i++vlyll n+a++++ +++ei  ++   +va+lff +v+g+ +  ++ +++als+
     CDO71026.1 273 ATAMFKVIYSYAGWSNVNYVLNNVKDpiRTLKIAGPLGLGICAVLYLLANVAYFAAATKEEILDSGV--TVASLFFSKVFGRKAVQALTVFVALSA 366
                    *************************9899*********************************97554..58***********999*********** PP

  AA_permease_2 285 lgaintavigssrvlealardgvlP....rffakvn.kfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllliigalilr 373
                    lg+++++++  +r++++la++g       +f+a+ +   +sp+ +++l++i s i+   +++a+  + ay f+l+v  +++ +++l+++ig+++lr
     CDO71026.1 367 LGNVFSVTFVLARINQELAKEGLTLpfgnKFWASNWpTGKSPFSGLVLHMIPS-IV---IMIAPppNVAYPFILDVQGYPIQVINLAVVIGLFWLR 458
                    **********************7555**********88899************.43...3344557****************************** PP

  AA_permease_2 374 kkrphlkr.pgki.lvaiigalfllfllvalffppkgpa..tqssliyt.ii 420
                    +++p+  r ++ + +va++ + +++fllva+f+ p++ +  t++  +y+ ++
     CDO71026.1 459 YHKPNAVRpFRVWlIVAFFYLAVVVFLLVAPFIRPANGVgdTPPLPYYLyCL 510
                    ******77366675688888*************9998873355556666522 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3183.93
//
Query:       CDO71027.1  [L=348]
Description: hypothetical protein BN946_scf184844.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-18   65.4   9.6      2e-07   31.5   0.2    4.7  5  WD40         WD domain, G-beta repeat
    8.1e-07   29.3   0.0       0.02   15.1   0.0    4.5  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.11   12.4   0.0        2.9    7.7   0.0    2.4  3  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.4e-05      0.38      12      38 .]      14      41 ..       6      41 .. 0.86
   2 ?   -1.6   0.1      0.99   5.9e+03      26      35 ..      69      78 ..      49      78 .. 0.49
   3 !   31.5   0.2   3.4e-11     2e-07       3      38 .]      86     122 ..      84     122 .. 0.91
   4 !   24.7   0.3   4.9e-09     3e-05      10      38 .]     232     261 ..     215     261 .. 0.79
   5 ?   -1.2   0.0      0.76   4.6e+03      13      28 ..     278     293 ..     268     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.4e-05
                SEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40 12 svtslafspdgaw.lasGsdDgtvriWd 38
                sv+s++fsp ++  l+ + +D tvr++d
  CDO71027.1 14 SVSSVRFSPTNPNhLLVSAWDTTVRFYD 41
                599**********64579********98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.99
                EEEETTSEEE CS
        WD40 26 asGsdDgtvr 35
                 sG+ D +vr
  CDO71027.1 69 YSGGLDTSVR 78
                2566677776 PP

  == domain 3  score: 31.5 bits;  conditional E-value: 3.4e-11
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++ +l  Hs+ ++s+ +s+d+++l++Gs+D+t+r+Wd
  CDO71027.1  86 KVNHLGQHSDaISSMNYSRDQNLLITGSWDRTIRFWD 122
                 67899999556*************************9 PP

  == domain 4  score: 24.7 bits;  conditional E-value: 4.9e-09
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H  +v++l+f+p  + +as++ Dgtv iWd
  CDO71027.1 232 HvWPVNALSFHPTYNTFASAGSDGTVSIWD 261
                 544499***********97655*******9 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.76
                 EEEEEEETTSSEEEEE CS
        WD40  13 vtslafspdgawlasG 28 
                 v s+af+ dg+ la G
  CDO71027.1 278 VPSIAFNCDGTKLAVG 293
                 55899999**999987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.021   1.2e+02      40      79 ..      14      54 ..      10      63 .. 0.76
   2 !    4.2   0.0    0.0087        52      27      66 ..      85     122 ..      72     133 .. 0.79
   3 ?   -1.1   0.0      0.41   2.4e+03      50      70 ..     146     166 ..     140     188 .. 0.79
   4 !   15.1   0.0   3.4e-06      0.02      39      90 ..     234     284 ..     214     286 .. 0.85
   5 ?    2.3   0.0     0.036   2.2e+02      38      58 ..     275     295 ..     270     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.021
  ANAPC4_WD40 40 evrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvk 79
                 +v+s++++p + + L v+  d++vr++d+   +   +++  
   CDO71027.1 14 SVSSVRFSPtNPNHLLVSAWDTTVRFYDVAANEQKAKFDHR 54
                 57788888724578999999*********988877776655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0087
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++v +l   +++  ++s++++ d +lL  +  d ++r+ d
   CDO71027.1  85 EKVNHL--GQHSDAISSMNYSRDQNLLITGSWDRTIRFWD 122
                  555555..57778899999999999999999999998876 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.41
  ANAPC4_WD40  50 gklLavaysdgevrlldaesg 70 
                  +++L+va++    +++d+ + 
   CDO71027.1 146 NHILVVAMASRLFHIYDIRKM 166
                  589999999999999988765 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 3.4e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                    v++L+++p  + +a a sdg+v++ d +s+k +++++  +   v ++ ++
   CDO71027.1 234 WPVNALSFHPTYNTFASAGSDGTVSIWDHKSKKRLRQYPKYNAP-VPSIAFN 284
                  5799*********************************9988874.7776665 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.036
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavays 58 
                  +  v s+a++ dg+ Lav++s
   CDO71027.1 275 NAPVPSIAFNCDGTKLAVGVS 295
                  67899*************986 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.7   4.2e+03     127     146 ..      37      56 ..      18      66 .. 0.68
   2 ?    1.8   0.0     0.031   1.8e+02      68     104 ..     101     141 ..      72     182 .. 0.77
   3 ?    7.7   0.0   0.00048       2.9     102     156 ..     235     288 ..     216     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.7
                 EEEEETTTTEEEEEEE-TT- CS
       eIF2A 127 leiwdvkkkkkiakaeaana 146
                 + ++dv   ++ ak+++  a
  CDO71027.1  37 VRFYDVAANEQKAKFDHRAA 56 
                 55666665555555555555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.031
                 -TTSS-EEEEESSSSCEEEEEECS....CEEEEEEEEES-- CS
       eIF2A  68 spkskefaviyGkmpakvslfdlk....vkviskleeqkrN 104
                 ++++++ ++i G  ++++ ++d +     k++++l e+  N
  CDO71027.1 101 NYSRDQNLLITGSWDRTIRFWDPRapepSKLKHDLPERVYN 141
                 44566778999***********9855556666666666666 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00048
                 S--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSS CS
       eIF2A 102 krNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl..vewspdgr 156
                 + N++ f+p+ + ++ aG     G+++iwd k+kk + ++ ++na +  + ++ dg+
  CDO71027.1 235 PVNALSFHPTYNTFASAGS---DGTVSIWDHKSKKRLRQYPKYNAPVpsIAFNCDGT 288
                 6799999999999999985...688**************999998542267777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2165.36
//
Query:       CDO71028.1  [L=255]
Description: hypothetical protein BN946_scf184844.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 1548.39
//
Query:       CDO71029.1  [L=490]
Description: hypothetical protein BN946_scf184844.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-22   79.8   0.0    5.8e-22   78.8   0.0    1.5  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   3.2e-26   5.8e-22       1     212 [.      20     381 ..      20     414 .. 0.74

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 3.2e-26
                    EEEEEEECSTTSSTCC......-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES........-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEE CS
  Peptidase_C14   1 kkAliIginnYpgtka......eLrGcanDaermaklLvkrlgFevenililtdd........ptgknirkalkwlvksadhspgDslvvhysGHG 82 
                    kkAl+Igin Y ++ +       L  +  Da+++ +lL+ ++ +  en++ l d+        pt++ni++++++lv  a+  +gD ++++y+   
     CDO71029.1  20 KKALLIGIN-YSDAPEmpdsfrVLLHPRQDAKDFGELLIAKYDYVRENVVFLLDEeegdprfaPTRDNILREIRRLVHGAR--SGDHFMFYYLIPI 112
                    89*******.**88878889999*************************99999999*************************..99******87444 PP

                    E..T....EEECTTC.SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBC......................................... CS
  Peptidase_C14  83 t..rvpaecivpvdv.nsliqdddirdlfggdklpslagkpktiiidaCr.ggll......................................... 133
                       +    +  + ++ + +i d+++r+l+ +d lp +a   +++i+d+C+ g+ll                                         
     CDO71029.1 113 DhwQ----YTEGMPFkKRMILDNKLRKLL-VDALPVGA--NLIAIFDSCHsGTLLdldhylcnnvyypwispgfrhyntlwrgvrrkndqrmtqae 201
                    4444....555555578888888888888.9*******..**********99999*********************99998888888888888887 PP

                    ..............................................................BEEEEEEES-SSS..................... CS
  Peptidase_C14 134 ..............................................................dkgiekdtsptnk..................... 146
                                                                                  +           k                     
     CDO71029.1 202 vkvikkklprasqparegspasqesrrtstrtrsvriyqrkrvsqdevlvfdtsvgvidsenG-----------Ktrqfsvynqpgravkrrqntt 286
                    777777777766666665555555555555555555555444444444444333222222220...........1444444444444444444445 PP

                    .......HCCCHCHHHHHHCSHHCEEECTTTSE..........................EEEESSSTTBSCEEETTTEEHHHHHHHHHHHHHTTTS CS
  Peptidase_C14 147 .......feedssskekkpekqslsklpseadv..........................lllsgcqddqtSadgsengsaftqalqkvleekggki 209
                           +++d s ++ +++ +++++++++                             ++ls+c d q+ ++++ ++  ftq l+k l+ + +  
     CDO71029.1 287 lsmlldiWGSDVSLSVLSQRSDIIEEIDVPM-CssptdmlpcdgfceekaeipedqpnvISLSACGDSQYTWESKRTS--FTQVLIKQLKRNPH-P 378
                    5566666555556666666666665555555.045556677777788888888888888***************9999..8********65554.2 PP

                    BHH CS
  Peptidase_C14 210 slk 212
                    +lk
     CDO71029.1 379 PLK 381
                    444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3247.74
//
Query:       CDO71030.1  [L=247]
Description: hypothetical protein BN946_scf184844.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1612.95
//
Query:       CDO71031.1  [L=118]
Description: hypothetical protein BN946_scf184844.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.034   13.3   0.0      0.038   13.1   0.0    1.1  1  DUF5129   Domain of unknown function (DUF5129)


Domain annotation for each model (and alignments):
>> DUF5129  Domain of unknown function (DUF5129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.1e-06     0.038      35      77 ..      42      83 ..      28     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-06
     DUF5129 35 geasddlnekvLefaraehPeWlsadgqkWadGLfivaldpeg 77
                 e +d+l     ++ar + P Wls+  +++a G +i  +d  g
  CDO71031.1 42 SEEKDALHRSAADRARRKSPGWLSGA-DHYAAGSVIQNVDLLG 83
                4678999999**************85.78999****9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 826.11
//
Query:       CDO71032.1  [L=272]
Description: hypothetical protein BN946_scf184844.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.22   10.3   0.0       0.32    9.7   0.0    1.2  1  Herpes_ORF11  Herpesvirus dUTPase protein


Domain annotation for each model (and alignments):
>> Herpes_ORF11  Herpesvirus dUTPase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.8e-05      0.32      57     101 ..     154     200 ..     138     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 1.8e-05
  Herpes_ORF11  57 welpavnstafllagaapnn..rvkiaptvvsqseepiivslrsslr 101
                   ++  av ++++++ +  p++  +v+i p +v ++ e+i + lr++l+
    CDO71032.1 154 SGPVAVEKCTLYFSEGTPCKiePVTISPLCVIDVLEEIGIALRRELS 200
                   56667888999999888886548********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1988.35
//
Query:       CDO71033.1  [L=444]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-15   56.5   0.0    2.2e-13   50.3   0.0    2.3  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.2e-17   2.2e-13      15     277 ..      97     372 ..      84     376 .. 0.69

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.2e-17
                 ETTSCGGSHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTT.......GCTH.....HHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHH CS
   Cellulase  15 tswgnpyttkalidevkdagfntvRlpvswgelvenapdy.......kvde.....nslerveevvkyakenglyvildiHseegwltkadgnssedta 101
                 ++w +   t+a  + ++d+g+ntvR+p+++  +++++p++                 + +r++++++ a + g+ v+ d+H  +g  +++d +s ++ +
  CDO71033.1  97 HHWDTW-VTDADWAWLADKGINTVRIPIGYYHICGADPGVlkgtdfaD--LdhvfaGAWARLTNALATAHRYGIGVLFDLHAAPGK-QNGDAHSGTSLE 191
                 455433.45666677899***********9999999999966666552..155666999***********************8665.788888888888 PP

                 HHHHHH................HHHHHHHHHT.TTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHH CS
   Cellulase 102 eeffkk................lwtqiAeryk.kndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgav 183
                  +ffk+                 +t++A       ++ v++el+NEP +++++        de+k+++  a+ a+Ra++p+  + +    w ++ ++  
  CDO71033.1 192 PAFFKHarnmdhalrvlsalttHLTAFARSHDpPLPNLVGIELLNEPQPGGHD--------DELKRWYADAFRALRAIDPDLPLYISD-AWRTDDYAGF 281
                 88877777777777777766668888888885334679***********7776........999*****************8888877.6888766633 PP

                 CTSGSSSSTTEEEEE...EEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSH....HHHHHHHHH.....HHHHHHTTT CS
   Cellulase 184 lndPndsqdnliysv...HfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgd....lakeeaekw.....ldylkekgi 270
                  +       + i+++   H+    d            ++ +a++++ +++ l   g ++++gE+ +  + g+    +++ +a++      l + +++ +
  CDO71033.1 282 VKA----WAQDIATPaaeHARRLRD-----------ANDGTAKTFARVTGELEGAGGALVVGEWSAALNPGSlhgaPDERTAKRAfveaqLALYEQYCA 365
                 322....223333330003222222...........222345667777777777777777777777655555555433222222244544666677777 PP

                 EEEEEEE CS
   Cellulase 271 swiyWsl 277
                 +w++W++
  CDO71033.1 366 GWFFWTY 372
                 7777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3694.77
//
Query:       CDO71034.1  [L=520]
Description: hypothetical protein BN946_scf184844.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-09   35.6   0.6      2e-08   34.0   0.0    2.2  2  F-box-like  F-box-like
  ------ inclusion threshold ------
       0.17   12.5   0.3       0.56   10.9   0.3    1.8  1  SlyX        SlyX


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   2.2e-12     2e-08       3      47 ..      96     154 ..      94     155 .. 0.81
   2 ?   -2.3   0.1      0.47   4.2e+03      30      36 ..     205     211 ..     204     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.2e-12
  F-box-like   3 rLPdEiLlqIF..............syLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 rLP+E+L+ IF              s+++    l +a V+r+Wr++a +tp+LW+++++
  CDO71034.1  96 RLPPEVLVLIFkagarmpqdgpvteSFVSRPFPLVIASVSRQWRDIAISTPELWTNITI 154
                 8**********88888777777777444333247789*******************987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.47
  F-box-like  30 rWrrval 36 
                 rWrr+al
  CDO71034.1 205 RWRRFAL 211
                 8***996 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   6.3e-05      0.56      16      39 ..       8      31 ..       4      35 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX 16 edtieeLndvvaeqqqqidrlqrq 39
                 d i eLn++ ae+q++i+r+q+ 
  CDO71034.1  8 RDIIAELNRQAAEHQREISRIQQS 31
                589******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4095.17
//
Query:       CDO71035.1  [L=436]
Description: hypothetical protein BN946_scf184844.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3097.64
//
Query:       CDO71036.1  [L=291]
Description: hypothetical protein BN946_scf184844.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2331.28
//
Query:       CDO71037.1  [L=1296]
Description: hypothetical protein BN946_scf184844.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-103  346.1   0.1   2.6e-103  345.1   0.1    1.5  1  DNApol_Exo  DNA mitochondrial polymerase exonuclease domain
    3.7e-49  167.8   0.0    7.3e-49  166.8   0.0    1.4  1  DNA_pol_A   DNA polymerase family A
  ------ inclusion threshold ------
      0.026   14.3   2.0      0.064   13.0   2.0    1.6  1  Vpu         Vpu protein
       0.15   11.7   0.0        0.3   10.7   0.0    1.4  1  DUF2026     Protein of unknown function (DUF2026)
        5.3    7.1   8.0        1.2    9.2   0.2    3.6  5  PilJ        Type IV pili methyl-accepting chemotaxis transduc


Domain annotation for each model (and alignments):
>> DNApol_Exo  DNA mitochondrial polymerase exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.1   0.1  7.2e-107  2.6e-103       2     282 .]      74     399 ..      73     399 .. 0.92

  Alignments for each domain:
  == domain 1  score: 345.1 bits;  conditional E-value: 7.2e-107
  DNApol_Exo   2 evefklPkLegenieeHfrklgekqaepylslaeelaeaelpeipekwalksGWtrYekd....ksaesvdyP.....eeealvfDvevlvkesklpvl 91 
                 ++ f+lP+L+g++++eHf+++g + a+p+l+la++la+a+lp++p++w+++sGWtrY+      + +e v+yP      ee+lvfDve++++ s+++v+
  CDO71037.1  74 NIGFTLPPLQGRTLDEHFYRIGATAAQPWLTLAQDLAAAQLPPKPDHWHIQSGWTRYSFMpdgsSYSEYVEYPefegrPEEMLVFDVETMPEYSPYAVM 172
                 788******************************************************864434356799****5554447******************* PP

  DNApol_Exo  92 AvavsekaWYsWvSprlleeseeeeklelkeLiplesskkervvvGhnvsyDRarikeeYslessktrflDTmsLhvavsGltsqqralwlkarkekkk 190
                 A+a++++aWYsW+Sp+ll+e++     ++k+Lipl++++  rvvvGhnvsyDRari+eeY+++s++trflDTm+Lhvav+G++s+qr++w+k+rk+k+k
  CDO71037.1 173 ACAATKNAWYSWISPWLLGETN-----NPKQLIPLGDPSVARVVVGHNVSYDRARILEEYNINSTQTRFLDTMALHVAVKGISSHQRPAWMKYRKSKEK 266
                 *********************9.....8********************************************************************999 PP

  DNApol_Exo 191 kekaaeeeeeeee.........................................kkeeeseeeekewkevsslnsLadvaklycgieldKekrdlfvke 248
                 +e++ +e+ e+                                            +e e++ +ek+w++ +s+nsLadva+l+c+i++dKe+r+ f++ 
  CDO71037.1 267 AEEQRSEAIETVYelmreaeerlqnesdperradlqrvmremeeslpslqtgdlAAEPEEDITEKRWEDLTSANSLADVARLHCDITMDKETRNDFMTA 365
                 888877443333256666677777888999999999999999999999999998777788889999********************************* PP

  DNApol_Exo 249 tleeirenfqelleYcakDveathevfkkllpkF 282
                 t eeir+ + ++l+Yc++Dv++th+vf+k+lp+F
  CDO71037.1 366 TPEEIRDGITNYLDYCSTDVAVTHAVFAKVLPSF 399
                 ********************************99 PP

>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.0     2e-52   7.3e-49      70     370 ..     772    1143 ..     754    1146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 166.8 bits;  conditional E-value: 2e-52
                  .CHHHHHHHHHHHHHHHHHT..TTTGGGCC.....BTT.TSEE--EEE...............SSSSSSSS-EEESS-GGGS-TTS........... CS
   DNA_pol_A   70 hplaklileyrelsklksty..vdallkli.....nkk.tgrihtsfn...............qtvtatGrlsssepnlqnipirt........... 132 
                   pl k++++y + ++l s +  ++ +l+++     + + ++r+  +++               + +++ G + ++ ++++++  r+           
  CDO71037.1  772 SPLSKTFMKYAQDGTLASPFeeAKDALDMNaqcsyWISaRDRVTKQMVvwqddkidagisrpaEPEKKWGIIVPQVITMGTVTRRAiektwltasna 868 
                  699***************65559999999999999877799**********************99*****************745577777777655 PP

                  ...CCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHH....HHH.........HTTH-HHHHHHHHHCTS.GGGHHHHHHHHHHHHHHH CS
   DNA_pol_A  133 ...eegrriRkafvaeegghvllsaDysqiELRilAhlsgdekli....eaf.........kegeDiHsktAsevfgvpveevtkeqRrqaKainfG 213 
                       g ++++++ a++g+  l++aD+++ EL+i  +++gd+++     +a+         ++g+D+HsktAs ++++         R+qaK++n++
  CDO71037.1  869 kknRVGSELKAMVRAPPGYA-LVGADVDSEELWI-SSVMGDAQFGlhgaTAIgwmtlegtkAAGTDLHSKTASILGIS---------RDQAKVFNYS 954 
                  433444477********766.*************.9*******98888766688888888555**************9.........********** PP

                  HHTT--HHHHHHHH.....TSSHHHHHHHHHHHHHHSHHHH.................HHHHHHHHHCCCE.CCEEETTCSEEEECTTT-CCH..CC CS
   DNA_pol_A  214 iiYGagakgLaeql.....giseeeAkefiekyferypgvk.................syleetleeakek.gyvetllgrrrylpeikskna..al 285 
                  +iYGag +++   l     g+  e+A++++e+++++++g +                 s+++++lee++ + ++ ++ lg+ ++   ++++    + 
  CDO71037.1  955 RIYGAGMRHAVLLLlqsnaGMLPEQAQKLAENLYASTKGKNthgahlfgrkfwyggteSFVFNKLEEIALSdKPQTPALGCGITY-ALSKDYLpaKF 1050
                  *******99777776554479*****************98889999999999999999***********999***********99.55444332133 PP

                  CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHH......HHHHHHHHHHHHS...SS--EEEEEE CS
   DNA_pol_A  286 rekaeraavNapiQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveeva......elvkeamesavel...dvplkvevkv 370 
                   ++ + +++N+++Q+s++D+++l+++++e+++++++++ar+l++vHDEl++ v+ee+++++a      +l++++   a++l   d+p+ v++++
  CDO71037.1 1051 GSDYMPSRINWVVQSSGVDYLHLLIVSMEHLIAKYNIQARYLISVHDELRYLVKEEDKYRAAlalqiaNLWTRSY-FAFKLgmdDLPQGVAFFS 1143
                  3446*********************************************************98888888888877.455546678888888775 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.0   1.8e-05     0.064      26      75 ..     256     311 ..     245     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
         Vpu  26 vyreykkikkq......keierlikrireraedSgnESdGeeeeelakLvhshgfd 75 
                 ++ +y+k k++      + ie  ++ +re +e  +nESd e    l++ + +++  
  CDO71037.1 256 AWMKYRKSKEKaeeqrsEAIETVYELMREAEERLQNESDPERRADLQRVMREMEES 311
                 5789999999888899999****************************999988765 PP

>> DUF2026  Protein of unknown function (DUF2026)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.4e-05       0.3     115     166 ..     298     348 ..     286     358 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.4e-05
                 --BEEEEGGG--SSTT---STT-EEEEE-HHHHHHHTTTGGG-HHHHHHHHH CS
     DUF2026 115 akmfqkkldsmaesindlkksGDffldpdlevteellkklakslalkdlaev 166
                 +  +q+ + +m es+ +l + GD   +p+ ++te++ ++l++ + l d+a++
  CDO71037.1 298 RADLQRVMREMEESLPSL-QTGDLAAEPEEDITEKRWEDLTSANSLADVARL 348
                 5569*************9.57***************************9976 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00034       1.2      26      73 ..     281     324 ..     277     339 .. 0.79
   2 ?   -0.6   0.0      0.37   1.3e+03      80      98 ..     418     436 ..     392     449 .. 0.83
   3 ?   -3.3   0.0       2.5   8.9e+03       3      15 ..     496     508 ..     495     510 .. 0.84
   4 ?   -3.0   0.0         2   7.2e+03      16      37 ..     973     994 ..     970    1000 .. 0.63
   5 ?   -0.9   0.2      0.44   1.6e+03      70     102 ..    1225    1255 ..    1216    1260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00034
        PilJ  26 lakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvp 73 
                 l++ea + +++   + e+ra+l++ +++++++l +l+ gd+a     p
  CDO71037.1 281 LMREAEERLQNE-SDPERRADLQRVMREMEESLPSLQTGDLAA---EP 324
                 566666666666.7889***********************984...44 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.37
        PilJ  80 qleaveqlWqelkkpaeaa 98 
                 ++  v+++W++++ +ae+ 
  CDO71037.1 418 SFLTVNEEWERYLANAERT 436
                 677899*********9764 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.5
        PilJ   3 laqsegdaaaINv 15 
                 ++ +e+da+aI+ 
  CDO71037.1 496 SSALESDAEAIAS 508
                 6889*******86 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2
        PilJ  16 AGslRMqsqRlakeallaaaga 37 
                 AG l  q+q+la ++++ + g+
  CDO71037.1 973 AGMLPEQAQKLAENLYASTKGK 994
                 5555557788886666666555 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.44
        PilJ   70 llvpaeavraqleaveqlWqelkkpaeaalaqq 102 
                  +l    + +++l+++++l q +k  ++aa+ +q
  CDO71037.1 1225 WLRA--QATSDLDEIRKLAQTYKGEVAAAATSQ 1255
                  4444..788999999*****9999996666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 8516.96
//
Query:       CDO71038.1  [L=530]
Description: hypothetical protein BN946_scf184844.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-45  155.3   0.0    4.7e-45  154.4   0.0    1.2  1  COesterase     Carboxylesterase family
     0.0015   18.4   0.1     0.0031   17.4   0.1    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   5.3e-49   4.7e-45       4     446 ..      18     468 ..      15     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 5.3e-49
                 EEEETTEEEEEEEEEESTCS........EEEEEEEEESSB---GGGTTS--BE.----SS.EEECBS---BESEECSSSSSCGHHCHHH.....BES-- CS
  COesterase   4 vvetslGkvrGkrvklksek........evdaFlGiPYAepPvgelRFkkPep.aepwtg.vrdAtkfspaCpqnaeksekeekeleaw.....vsEDC 87 
                 v et++G v+G+r                  +   +PYA pP    RF+ P+p + ++     +    s+  +q ++  +   +  e +      sED 
  CDO71038.1  18 VTETRFGAVQGRRAANGAAVflgafrcsGLISHPEVPYALPP---VRFQDPVPlPASYRYqDKEYILESKYAVQPNNDGQAAGVPYEDKvglgqPSEDP 113
                 567999*******9955544999999999999**********...79******77777664455555667777777776666655555589999***** PP

                 -EEEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEE CS
  COesterase  88 LyLnvytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdp 184
                 L++n+ +P +   a+  +PV V+ihGg +q+gs +    ++++ aae + + V+i YRl ++GFl+ ++ +++GN+G++Dq lAL W+++nI++FGGdp
  CDO71038.1 114 LFVNIVSPPSF-PAQGDFPVKVYIHGGFLQFGSPHGlsGQAQFVAAERSEVWVNIGYRLSAFGFLASDQPKVDGNFGFKDQWLALLWIRDNIKAFGGDP 211
                 *******9875.688888****************98656677788888*************************************************** PP

                 EEEEEEEETHHHHHHH..HHHHSGGGTT...SBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHH..HHHHHHHCS-HHHHHHCCGGSSSSS CS
  COesterase 185 ervtlfGesAGaasvs..llllsplsrg...lfkraIlqSGsalspwaiqkkarkrakklakkvgckasssk..elveclrsksaeelldaqekaleas 276
                 ++vt+     Ga sv+  l+ +s l++g    f+ aIlqS + ++   +  + r ++++l++++  + +s +  ++++  r+ + + ++ a e+  +a 
  CDO71038.1 212 DNVTVT----GAHSVHqlLHHASRLAQGekaPFRTAILQSNAIVTTPKTPGELRPQFEALCRALLLDPASPDilDILRDTRRVPWSAITHAIET--DAL 304
                 ****97....6888882244566777755559**********************************77777767888889999*********88..777 PP

                 STTC-SSS-B--SSSSSS-HHHHHHCGCCSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHH CS
  COesterase 277 ssklvsfaPvvdgdflpekPeellksegkvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddae 375
                  + + +f    + + + +++    ++  + +   G  ++    ++  +l +e  + +  + +s+      + le +++e++ +++++ y   ++  d++
  CDO71038.1 305 GTIHGTFRGAWEPSWIGDTDTMSWQR--SGDFARGLKAHGIEAIVVGDLTEEWYIYSLSHPVSSMG-DIIVNLERYYREDVVHKMIDLYG--KTPTDPD 398
                 77788888888888999766666666..78888999999999999888888655555555554443.33334444459***********9..9999*** PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHH.HTTGGGTSGC CS
  COesterase 376 ksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeley.vfglplleke 446
                 ++++ + +ll + ++++pv+ +a+++ ++g pv  Y+      ++   ++  v+hg++ ++  + lp+le +
  CDO71038.1 399 EVKEVFGRLLAEGQVHLPVRLLARDLINAGFPVVRYEIAWTP-EQV-RPFGYVTHGTDRSLwALRLPVLEGD 468
                 **************************************9988.333.4589999999977624566666554 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.4e-07    0.0031       2     105 ..     134     245 ..     133     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.4e-07
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---T.........TTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlA.........PehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaav 88 
                    vy+HGG   +gs+      ++ +a+e   v v++ Yrl+         P+      ++d + al w++++ +++g dp+++++ G     +l +++
     CDO71038.1 134 VYIHGGFLQFGSPHGLSGQAQFVAAERSEVWVNIGYRLSafgflasdqPKVDGNFGFKDQWLALLWIRDNIKAFGGDPDNVTVTGAHSVHQLLHHA 229
                    8************************************9655555566678888899**************99*************98888888888 PP

                    HHHHHHTT---EEEEEE CS
  Abhydrolase_3  89 alrardegepkvagqvl 105
                    ++ a+ e+  + ++ +l
     CDO71038.1 230 SRLAQGEK-APFRTAIL 245
                    88887773.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3694.40
//
Query:       CDO71039.1  [L=349]
Description: hypothetical protein BN946_scf184844.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-13   48.9  10.4    7.4e-11   41.7   0.0    3.0  2  Perilipin       Perilipin family
    1.6e-06   28.2  10.9     0.0017   18.3   3.7    3.2  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.002   16.2   4.6     0.0033   15.5   4.6    1.2  1  Prominin        Prominin
     0.0071   16.7   1.2        0.1   13.0   0.0    2.6  3  Gp-FAR-1        Nematode fatty acid retinoid binding protein 
  ------ inclusion threshold ------
      0.046   13.1   1.4      0.074   12.4   0.8    1.6  1  GAS             Growth-arrest specific micro-tubule binding
      0.049   13.2   0.0      0.085   12.5   0.0    1.5  1  ArsR            ArsR transcriptional regulator
       0.14   12.3   1.0         28    5.0   0.4    2.9  2  PI_PP_I         Phosphoinositide phosphatase insertion domain
       0.22   11.1   2.6       0.49    9.9   0.0    2.4  3  DUF4088         Protein of unknown function (DUF4088)
       0.24   11.4   3.8          5    7.1   0.3    3.1  3  Phasin          Poly(hydroxyalcanoate) granule associated pro
          2    8.8   5.6        4.1    7.8   1.5    2.6  2  Syntaxin_2      Syntaxin-like protein
        4.3    7.6   6.1         55    4.0   0.2    4.0  4  ApoA-II         Apolipoprotein A-II (ApoA-II)
        4.6    7.3  11.8        3.6    7.6   4.8    3.4  3  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,


Domain annotation for each model (and alignments):
>> Perilipin  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   4.9e-14   7.4e-11       6     141 ..      16     140 ..      11     154 .. 0.86
   2 !    5.8   7.9    0.0041       6.1     234     357 ..     185     306 ..     169     332 .. 0.66

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 4.9e-14
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
   Perilipin   6 svvqRvanLplvsstyelvssaYsstKeshPllksvceaaEkgvktltaaaltgaqPildkLepqiataneyAckgLDkleeklPi.Lqqpaekvvset 103
                 ++ +Rv ++plv+   + + s+      + P+ +s   aa    ++++++al+ ++Pi ++L p ++ a+++A+kgLD +e++ P   + p+e++  ++
  CDO71039.1  16 TIFHRVGSIPLVADSLNTIHSTL----SNNPYTRSPYAAA----QGISKSALSYTEPIQKRLAPILTKADDLANKGLDVVESRYPYpFHTPTEEIFKDL 106
                 67889999999999988887655....5789999998887....7899*************************************879*********** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Perilipin 104 kelvtqtvsgAkdavsstvtevvdktkgAvqssveltk 141
                 k+    +   Akd+ ++t+ e v+     v ++++ + 
  CDO71039.1 107 KG----RSDHAKDVANKTLDEKVKTPAYQVAQGIDQKL 140
                 **....67899999999999999988888888888765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHHHHHHHHHHHHHHHH--...---------------------------------..SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS- CS
   Perilipin 234 rqakqraqealaqlsstldLielakkglsaanqklseaqekllqswlewkkkqqeeseeeeeeeeeeqvEsrtLsllrsltqqLqttcqslvssiqglP 332
                  q  + + e + q++    L+++a ++++++++  s +    + ++   + +   e ++ +++     + s   + +++++++L +t++ l s+i   P
  CDO71039.1 185 DQLLTYSTEQINQIKAQSALVQRASATAHSLTELASSSYGAAQSRVHALSDTMVAELQKVQAS--TTALPSTLQASFHDVSANLASTINDL-SAILKSP 280
                 344444558888888888888888888888777766666666666666666666666666555..56666666668899999999998886.5566669 PP

                 HHHHHHHHHHHHHHHH.HHHHGGG-- CS
   Perilipin 333 ssvqekvqqarrsaee.lqaslskas 357
                 + + ekv+++r++++e +q +l +a+
  CDO71039.1 281 EPLPEKVHKVRDTVQErVQPILDTAT 306
                 99999999999988764666676654 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   1.9e+02      85     118 ..      57      90 ..      47     155 .. 0.42
   2 !   18.3   3.7   1.1e-06    0.0017      68     164 ..     180     278 ..     179     290 .. 0.89
   3 !   10.6   0.8   0.00025      0.38      23     147 ..     290     326 ..     278     338 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
                     HHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHH CS
  Apolipoprotein  85 rlaadaeelqeqlavyaeelrerlerhvealkar 118
                     +++  +e +q++la+   ++ + + ++++ + +r
      CDO71039.1  57 SALSYTEPIQKRLAPILTKADDLANKGLDVVESR 90 
                     3333344444444444444333333333333333 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.1e-06
                     HHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHH...HHHHHHHHHHHH-----..-----SSSHHHHH CS
  Apolipoprotein  68 leelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelr...qklaerleelkeslaphaeeveerlssrveel 159
                     ++elr +l +y+ e  ++++a++  +q++ a  a  l e ++++ +a ++r++++++ ++   qk++++  +l ++l+++   v ++l+s++++l
      CDO71039.1 180 TKELRDQLLTYSTEQINQIKAQSALVQRASA-TAHSLTELASSSYGAAQSRVHALSDTMVaelQKVQASTTALPSTLQASFHDVSANLASTINDL 273
                     5799999999999999999988776666655.599*************************7777999999999999999999999******9999 PP

                     HHTS- CS
  Apolipoprotein 160 rekle 164
                     ++ l+
      CDO71039.1 274 SAILK 278
                     98775 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00025
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHH CS
  Apolipoprotein  23 laqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealka 117
                     +                                                                                         +++++
      CDO71039.1 290 V----------------------------------------------------------------------------------------RDTVQE 296
                     2........................................................................................234444 PP

                     HHCHHHHHHHHHHHHHHHHHHH-----..- CS
  Apolipoprotein 118 rlapyveelrqklaerleelkeslaphaee 147
                     r++p+++ + ++++e l +lk ++ + + e
      CDO71039.1 297 RVQPILDTATARVQEVLNALKTRVSEDKSE 326
                     444444444444444444444444444333 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.6   2.2e-06    0.0033     571     729 ..     161     322 ..     149     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
    Prominin 571 eiqkelenlkvdlsnlelLteeerkdLeklresglskihsslyleqlckkltkvnletlaekleelanelsngk.knlkqslkneaqdlraiqqelvlp 668
                 +++ e+++ + + +  + Lt+e r++L + ++ ++++i+ ++ l q  +  t  +l++la++ +  a++  ++  +++  +l++ + ++ a+ ++l   
  CDO71039.1 161 DKHAETPEAQFQYQRAYFLTKELRDQLLTYSTEQINQIKAQSALVQRASA-TAHSLTELASSSYGAAQSRVHALsDTMVAELQKVQASTTALPSTLQAS 258
                 6678899999999*********************************8887.888********9999998755534677777777777777777777777 PP

    Prominin 669 lessvkklkksvkklde...ensdlqesikkllaaveraenflkkngseiinneskklldrile 729
                  +   ++l +++++l++   + + l e+++k+ ++v++  + + + ++  ++++ + l +r+ e
  CDO71039.1 259 FHDVSANLASTINDLSAilkSPEPLPEKVHKVRDTVQERVQPILDTATARVQEVLNALKTRVSE 322
                 7778888888888888888777779999999999999888888888888888888888887766 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   2.9e+03      40      59 ..     100     119 ..      85     142 .. 0.69
   2 ?    2.4   0.1      0.12   1.8e+02      61     134 ..     188     263 ..     172     269 .. 0.62
   3 !   13.0   0.0   6.7e-05       0.1      31     100 ..     260     331 ..     253     345 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
    Gp-FAR-1  40 dellaalKkkspaLyekaek 59 
                 +e+ + lK +s++    a+k
  CDO71039.1 100 EEIFKDLKGRSDHAKDVANK 119
                 56666666666665555443 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.12
    Gp-FAR-1  61 qaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvaktifnkykslseeaka...elekaFpeiv 134
                  ++ +e+++++++++  +v+  +a++ +l +   +     +s++ ++  t++++ ++ ++ + a   +l+++F  + 
  CDO71039.1 188 LTYSTEQINQIKAQSA-LVQRASATAHSLTELASSSYGAAQSRVHALSDTMVAELQKVQASTTAlpsTLQASFHDVS 263
                 4455677777777775.777777777776665555555555555555555555555555444444447777776665 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 6.7e-05
    Gp-FAR-1  31 kn.ykg.yknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrk.leaqvlagekpd 100
                 ++ +++ + ++++l a+lK+  p L ek+ k++ +++e+v+ + ++a + v+++++  +  + ++  + ++++
  CDO71039.1 260 HDvSANlASTINDLSAILKSPEP-LPEKVHKVRDTVQERVQPILDTATARVQEVLNALKTrVSEDKSEHQSVT 331
                 554445678999******98766.9****************************99765431444444444444 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8     5e-05     0.074      70     188 ..     180     296 ..     172     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
         GAS  70 veeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqleev 168
                  +eLr ql +y+   ++++++ka+   +++   + +   e  +  + ++++   +l+++  a +q+vq  t      L+   + ++++l +    l+++
  CDO71039.1 180 TKELRDQLLTYST--EQINQIKAQSALVQRASATAHSLTELASSSYGAAQSRVHALSDTMVAELQKVQASTTALPSTLQASFHDVSANLASTINDLSAI 276
                 579999**99998..788********************************************************************************* PP

         GAS 169 laaanldpaalsavseklee 188
                 l++ +  p+++++v+  ++e
  CDO71039.1 277 LKSPEPLPEKVHKVRDTVQE 296
                 ************99988876 PP

>> ArsR  ArsR transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.7e-05     0.085      44     130 ..     226     312 ..     187     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-05
        ArsR  44 veealklLkkikliEsqWrmpepgekpekeYhtsYskvqanfqcsledlsdiievafmsdeeleelvekiekeveeg.ntsisdlsrk 130
                 +++ ++ L  + + E q   ++    p+   ++s++ v+an+  +++dls i++      e+++++ +++++ v+   +t  + +++ 
  CDO71039.1 226 AQSRVHALSDTMVAELQKVQASTTALPS-TLQASFHDVSANLASTINDLSAILKSPEPLPEKVHKVRDTVQERVQPIlDTATARVQEV 312
                 5555666666666666666666444554.57899********************9999999999999999999987655555555555 PP

>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4     0.019        28      10      48 ..     172     210 ..     169     257 .. 0.78
   2 ?    4.6   0.0     0.025        37      38      92 ..     257     312 ..     238     317 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
                 HHHHHHHHC--TT--SHHHHHHHHHHHHHHHHHHHHH-S CS
     PI_PP_I  10 eyqqaYflnleskeaslkklkqdlnqfllkWeeikktsl 48 
                 +yq+aYfl+ e + + l+  + ++nq+  + + +++ s 
  CDO71039.1 172 QYQRAYFLTKELRDQLLTYSTEQINQIKAQSALVQRASA 210
                 699******999999999999999999887666665543 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.025
                 HHHHHHHHH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHHHHH.HHT.T..SCCCH CS
     PI_PP_I  38 lkWeeikktslsLeedLnkiannktplPsWfnelskaqqellr.vlaeaklsveei 92 
                  +++++  +  s  +dL++i +  +plP+  +++  + qe ++ +l +a+  v+e+
  CDO71039.1 257 ASFHDVSANLASTINDLSAILKSPEPLPEKVHKVRDTVQERVQpILDTATARVQEV 312
                 556677766677789**************999998887776662455555555555 PP

>> DUF4088  Protein of unknown function (DUF4088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00033      0.49     126     152 ..     113     141 ..     102     165 .. 0.80
   2 ?   -0.5   0.8      0.51   7.6e+02     102     138 ..     202     239 ..     175     279 .. 0.61
   3 ?   -1.5   0.0         1   1.5e+03     128     164 ..     286     322 ..     259     332 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00033
     DUF4088 126 aedi..rvleerlktPawrlaeslrqrvy 152
                 a+d+  ++l+e++ktPa+++a+++ q++ 
  CDO71039.1 113 AKDVanKTLDEKVKTPAYQVAQGIDQKLA 141
                 55552268****************99975 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.51
     DUF4088 102 aaivkeakgdaalvealaaqikasaed.irvleerlkt 138
                  a+v+ a + a  +  la+    +a++ +++l +++ +
  CDO71039.1 202 SALVQRASATAHSLTELASSSYGAAQSrVHALSDTMVA 239
                 34555555555555555554444444325555555544 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1
     DUF4088 128 dirvleerlktPawrlaeslrqrvyeakiavetesge 164
                  ++++ ++++     + ++   rv e+  a++t ++e
  CDO71039.1 286 KVHKVRDTVQERVQPILDTATARVQEVLNALKTRVSE 322
                 4555555555555555566666666666666665554 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.5   7.5e+02      69      93 ..     102     126 ..      73     152 .. 0.64
   2 ?    2.9   0.2     0.068     1e+02      38      79 ..     202     243 ..     187     279 .. 0.49
   3 ?    7.1   0.3    0.0033         5      57      94 ..     285     322 ..     278     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.5
      Phasin  69 kveevkekaeeqwdklekafderva 93 
                  ++++k + +++ d  +k +de+v+
  CDO71039.1 102 IFKDLKGRSDHAKDVANKTLDEKVK 126
                 3344444444444444444444443 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.068
      Phasin  38 eaLvkeGeklekktkkvaeekleevresvkskveevkekaee 79 
                 +aLv++ +++ ++  + a ++  +++++v++ ++++ +++++
  CDO71039.1 202 SALVQRASATAHSLTELASSSYGAAQSRVHALSDTMVAELQK 243
                 566666666666555555555555554444433333333221 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0033
      Phasin  57 ekleevresvkskveevkekaeeqwdklekafdervak 94 
                 ek+++vr++v+++v+ + + a+++++++ +a+++rv++
  CDO71039.1 285 EKVHKVRDTVQERVQPILDTATARVQEVLNALKTRVSE 322
                 67888889999999999999999999988888888875 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.5    0.0028       4.1      28      93 ..     180     248 ..     162     256 .. 0.84
   2 ?    2.1   0.2      0.17   2.6e+02      10      48 ..     265     307 ..     254     334 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0028
  Syntaxin_2  28 teelreklhelieeinelikktnellkklsqldnsssds...qqklqkekLkkdfkealqeFqkiqrqy 93 
                 t+elr++l +  +e  + ik+ ++l+++ s+ ++s+      +   ++++      + + e+qk+q + 
  CDO71039.1 180 TKELRDQLLTYSTEQINQIKAQSALVQRASATAHSLTELassSYGAAQSRVHALSDTMVAELQKVQAST 248
                 899*****99999999999************99999655755444599999999999999999999765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
  Syntaxin_2  10 snvstleklvkqLgtk....kdteelreklhelieeinelikk 48 
                 ++ st++ l   L+++        ++r+ ++e ++ i +++++
  CDO71039.1 265 NLASTINDLSAILKSPeplpEKVHKVRDTVQERVQPILDTATA 307
                 4466677777777777433333555555555444444433332 PP

>> ApoA-II  Apolipoprotein A-II (ApoA-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13     2e+02      32      57 ..      52      77 ..      48      87 .. 0.85
   2 ?    4.0   0.2     0.037        55      19      54 ..     110     145 ..     103     154 .. 0.88
   3 ?   -1.2   0.3       1.5   2.3e+03      29      49 ..     164     187 ..     161     210 .. 0.65
   4 ?    1.1   0.0      0.31   4.6e+02      37      67 ..     286     316 ..     250     323 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
     ApoA-II 32 selqaQakaYfektqeqlvPLvkkag 57
                + +   a +Y e +q +l P+  ka 
  CDO71039.1 52 QGISKSALSYTEPIQKRLAPILTKAD 77
                667778899************99984 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.037
     ApoA-II  19 tdyGKdlveKvkaselqaQakaYfektqeqlvPLvk 54 
                 +d  Kd+++K+ ++ +++ a +  + + ++l P+v 
  CDO71039.1 110 SDHAKDVANKTLDEKVKTPAYQVAQGIDQKLAPIVD 145
                 6889**************999999999999999986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.5
     ApoA-II  29 vkaselqaQak.aYf..ektqeql 49 
                 + ++e q Q + aYf  ++ ++ql
  CDO71039.1 164 AETPEAQFQYQrAYFltKELRDQL 187
                 566777777643777322334555 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.31
     ApoA-II  37 QakaYfektqeqlvPLvkkagtdlvnflssl 67 
                 +++   +  qe++ P+   a + + ++l+ l
  CDO71039.1 286 KVHKVRDTVQERVQPILDTATARVQEVLNAL 316
                 55555667899****9999999998888876 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.5   8.2e+03      57      79 ..     132     154 ..     116     157 .. 0.56
   2 ?   -0.2   0.4      0.62   9.3e+02      70     100 ..     189     221 ..     179     228 .. 0.69
   3 ?    7.6   4.8    0.0024       3.6      36      96 ..     230     300 ..     224     346 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
  Baculo_PEP_C  57 llaeldtrldtlltnLtdalnal 79 
                   + + +d++l+  ++    a+n+l
    CDO71039.1 132 VAQGIDQKLAPIVDYFAVAVNKL 154
                   33445556666666666666655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.62
  Baculo_PEP_C  70 tnLtdalnalq..dtlrneLtnlnsiltnLlss 100
                   t  t+++n+++   +l ++  ++   lt+L+ss
    CDO71039.1 189 TYSTEQINQIKaqSALVQRASATAHSLTELASS 221
                   444667777776566777777777777777776 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0024
  Baculo_PEP_C  36 latlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq..........dtlrneLtnlnsiltn 96 
                   + +l d++  +L++++++ ++l + l++ ++++++nL +++n l+          +++++  ++++  +  
    CDO71039.1 230 VHALSDTMVAELQKVQASTTALPSTLQASFHDVSANLASTINDLSailkspeplpEKVHKVRDTVQERVQP 300
                   56777888888999999999999999999999999999999999866666655555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.55
# Mc/sec: 1902.80
//
Query:       CDO71040.1  [L=391]
Description: hypothetical protein BN946_scf184844.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-15   55.6   2.5    1.2e-05   25.7   0.2    4.6  4  CBS       CBS domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   1.8e-05      0.32       2      35 ..      42      75 ..      41      83 .. 0.84
   2 !    5.3   0.0    0.0016        28      41      55 ..     150     164 ..     116     166 .. 0.74
   3 !   25.7   0.2   6.7e-10   1.2e-05       8      51 ..     195     239 ..     190     244 .. 0.91
   4 !    9.5   0.0   7.5e-05       1.3       8      39 ..     277     308 ..     271     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.8e-05
                HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEE CS
         CBS  2 gdimtrdvvtvppdttleealelmrekgvsrlPV 35
                +++  ++vv v+ dt++e+a e++ +k++ +l V
  CDO71040.1 42 KELIDSPVVEVDADTSVEDACETLLSKDLQCLAV 75
                788899*****************88888666655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0016
                 BEEEEEEHHHHHHHH CS
         CBS  41 klvGivtlrDllral 55 
                 +++Giv++r ll++l
  CDO71040.1 150 EYLGIVSDRALLSWL 164
                 69**********987 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 6.7e-10
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDl 51 
                  v+ ++ ++t+ +a++lm ++gvs++ VV de g l+  v+ +D+
  CDO71040.1 195 SVIAARASDTVLDAMKLMSDEGVSSVAVVdDETGGLLSAVSVTDI 239
                 578999***********************777779*********8 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 7.5e-05
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETT CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVded 39 
                 +v +v+p++tl   ++++  ++ +r++V++e+
  CDO71040.1 277 PVYSVTPNSTLFYTMQKLLATNAHRVFVTEES 308
                 7789*************8899989****9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.50
# Mc/sec: 2362.58
//
Query:       CDO71041.1  [L=628]
Description: hypothetical protein BN946_scf184844.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.54
# Mc/sec: 3522.84
//
Query:       CDO71042.1  [L=375]
Description: hypothetical protein BN946_scf184844.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-11   43.6   0.0    5.9e-11   42.5   0.0    1.6  1  CNH           CNH domain
  ------ inclusion threshold ------
       0.12   11.7   0.2          1    8.8   0.0    2.4  2  LVIVD         LVIVD repeat
       0.28   10.0   0.0       0.39    9.6   0.0    1.1  1  NiFeSe_Hases  Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   9.9e-15   5.9e-11     109     265 ..     158     309 ..      39     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 9.9e-15
         CNH 109 vvavkskivllewneplkkfkkklrefqvpaevfsisvl..kpklcvgvakgFelvnldegaaeslldpedns.ldfaarkenlkplaviqisedefLl 204
                 +v +++ i l+   e       ++ + ++p +   +      ++lc++ + +++++nl++++ + ll +++    d+      +kp ++  ise+efL+
  CDO71042.1 158 CVVKRNAISLYSLRER------LFFQKEIPLPTGGVLARrsGQYLCIADRENYNVINLEQASLMPLLPISQAMdSDI-----VVKP-SITVISENEFLI 244
                 6666666666666663......3333344444444443344899***************999999997766442333.....5666.7889999****9 PP

         CNH 205 cy....defavyvdlqGrrsrdseleWegkPesvaclepyllafhk.nfieirsvetgelvqeisg 265
                       ++++v+ +  G++ r  +leW+g+P +v + +py+    + n iei+svet+ +vq+i++
  CDO71042.1 245 LSwtgaTTLGVFITGDGDPVR-GTLEWPGHPAAVSLDYPYIATLLPnNTIEIHSVETQSIVQVIPA 309
                 854444899***********9.*******************99998577**************987 PP

>> LVIVD  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00017         1      10      25 ..     192     207 ..     191     207 .. 0.90
   2 ?   -0.3   0.1      0.11   6.8e+02       8      17 ..     276     285 ..     275     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00017
       LVIVD  10 sGnYaYvAdqdngLvI 25 
                 sG Y+++Ad++n+ vI
  CDO71042.1 192 SGQYLCIADRENYNVI 207
                 8***********9666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.11
       LVIVD   8 avsGnYaYvA 17 
                 avs +Y Y+A
  CDO71042.1 276 AVSLDYPYIA 285
                 7899*****9 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   6.5e-05      0.39      57      80 ..      95     118 ..      85     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 6.5e-05
                   HHHHHHHHHHHHHHHHTTGGGTS- CS
  NiFeSe_Hases  57 iaaalllhdhivhFYhLhalDwvd 80 
                   i+ al+l dh +hFY+L +lD v 
    CDO71042.1  95 ISRALVLADHQIHFYTLPTLDMVP 118
                   567899***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2393.05
//
Query:       CDO71043.1  [L=718]
Description: hypothetical protein BN946_scf184844.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   41.3   0.0    6.7e-10   39.4   0.0    2.0  1  Vps39_2   Vacuolar sorting protein 39 domain 2
    2.1e-07   31.2   2.3    2.9e-06   27.5   0.1    3.2  3  Vps39_1   Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   7.5e-14   6.7e-10       2      67 ..     564     629 ..     563     641 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 7.5e-14
     Vps39_2   2 elLskhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsveeellk 67 
                 +lL+++a +ld+++v+ ++P+e+pl+ l+ f  ++lr++l++++e q++k +++ ++l v e+  +
  CDO71043.1 564 KLLNSQAMNLDVVNVISMIPPEWPLRILSTFVTRSLRRTLHEHHEGQIIKAISQGQNLAVAEQTWE 629
                 79**********************************************************999875 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   3.2e-10   2.9e-06       1      68 [.     202     270 ..     202     288 .. 0.90
   2 ?   -0.9   0.0      0.23     2e+03      49      68 ..     303     322 ..     284     339 .. 0.65
   3 ?    1.2   0.0      0.05   4.5e+02      28      68 ..     434     476 ..     418     488 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.2e-10
     Vps39_1   1 iDTaLlkvYlkt.kpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkelade 68 
                 +DT+L k+ ++t k  ++  L+  +Na  l++ e+ L k++++++L +lY++++ +++ Le + +l++ 
  CDO71043.1 202 VDTVLAKLHVNTgKLPELYTLIDQPNAIVLSELEAELVKSQHINALCKLYQQRSDDAKLLETWARLVSG 270
                 8***********999***************************************************995 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.23
     Vps39_1  49 YygkklheeALeLlkelade 68 
                 +  k+  e+AL+Ll   + +
  CDO71043.1 303 WLVKNDSERALKLLLSTMPS 322
                 456899999***99877664 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.05
     Vps39_1  28 dlkdveeiLkkekkykeL..idlYygkklheeALeLlkelade 68 
                 d++ + ++L  + k+ +L   +l  + ++h++AL +l++  ++
  CDO71043.1 434 DPESIRACLLPHAKLLKLelAILEGKLGNHRSALSILVHDLND 476
                 6677778887777765443055555669*******99875553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4840.76
//
Query:       CDO71044.1  [L=550]
Description: hypothetical protein BN946_scf184844.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-20   73.3   0.0    1.8e-20   72.9   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.7e-05   24.2   0.0    2.7e-05   23.5   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0     2e-24   1.8e-20      69     381 ..     196     534 ..     184     535 .. 0.77

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 2e-24
                      EEEEESSHHHHHHHHHHTTS-T...TEEEEEESTSSHHHHHHHHHTHHH.....TTCEEEEESTTSHHHHHHHCCT..TEEEEEEESS-TTTT- CS
  Cys_Met_Meta_PP  69 aalavssGmaAiaaailallka...GdeivvsddlYggtqrllkkvlkk.....lgievkfvdtsdleelekaike..ntklvylEtptnpllk 152
                       ++++++GmaAi +a  +l+ a     + v+    Y  t ++l+k  +      +g+++++ + + l e e++++e   +  +++E p+npll+
       CDO71044.1 196 DVFLYPTGMAAIWSAH-QLALAtrpAAKSVCFGFPYTDTLKILEKWGPGcyflgHGLDSDIDELERLLEKESQLSEtpPVLSLFTEFPSNPLLR 288
                      5678899999995443.332220125556666666666666666654431111134444444444444444444432255568*********** PP

                      ---HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHH.HHHHHT-B--HHHHHHHHHH CS
  Cys_Met_Meta_PP 153 vvDiekiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkf.lqnalGavlspfdawlllrG 245
                       +D++++ +la k + l+vvD t+   ++++ l + aD+vv S +K  +G  +v++G +v + + +  + lk  +  +   +    da  + r 
       CDO71044.1 289 SADLPRLRQLADKYDFLIVVDETLGNFVNVEVLPY-ADVVVSSLSKIFSGDANVMGGSLVLNPRGRHYSALKAyMAAEYEDTYFDEDAIYMERN 381
                      *********************************99.9************************9999888888762556778888999******** PP

                      HTTHHHHHHHHHHHHHHHHHHHHTS.......T.......TEEEEE-TTSTTSTTHHHHH......HHSSSG-SEEEEEESSHHHHHHHHHHC- CS
  Cys_Met_Meta_PP 246 lkTLslRlerhqenAlkvAefLekh.......p.......kvekvyYpglpshpqhelak......kqlkgaggvlsFelkseeekakkfvdnl 319
                       +  + R++  +en l+v +fL++        p        +++vyYp   + +++e  +      +   g+gg++s++ +s   ++k+f d+l
       CDO71044.1 382 SRDFRRRIRIIDENTLAVCSFLRSRslraepqPsappqprVIKEVYYPKWITPHNFEKCRvrgpdgQPIGGYGGLFSLTFTSL-DASKAFFDAL 474
                      ***********************99677766515556666789*****99999999877622222234556778******998.789******9 PP

                      SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 320 klfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                        ++   slG   +l+ +p++   +  + +  +  gv+++l+R+svG+E+ + l++ +++al
       CDO71044.1 475 PCMK-GPSLGTNFTLA-CPYTILAHYGELDWAAGWGVEEGLVRVSVGMEEREALLKGFEKAL 534
                      9765.79***988875.666665555666778899************************998 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     3e-09   2.7e-05     131     224 ..     254     336 ..     244     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3e-09
                    -HHHHHHHHTTHHCTTE..TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTS CS
  Aminotran_1_2 131 dlealeealkeapegnk..ktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafG 224
                    d+++le++l++ ++ +   ++  +++e p+NP    a+l+ l++l   a+ky +l++vDe+ + fv           +v ++ + ++v+slsK f+
     CDO71044.1 254 DIDELERLLEKESQLSEtpPVLSLFTEFPSNPLLRSADLPRLRQL---ADKYDFLIVVDETLGNFVNV---------EVLPYAD-VVVSSLSKIFS 336
                    99********9776666889999**********************...******************97.........7889988.99******983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4085.96
//
Query:       CDO71045.1  [L=389]
Description: hypothetical protein BN946_scf184844.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-21   75.7   0.0    5.5e-21   75.2   0.0    1.2  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   3.1e-25   5.5e-21       4     213 ..      37     252 ..      35     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 3.1e-25
  RabGAP-TBC   4 RgevWklllgyep........evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp.esesfknkqgqnqLeriLkaysiynpevgYcqGm 93 
                 R ++W+ ll +               +  +  +e+ e  ++ +++++++++++qI +D  r+f    +  + + +q  L+r++  +  ++p ++Y+qG 
  CDO71045.1  37 RVRIWPKLLHIDGesssddivA-TGSTAPHAAREEHERADQRTREEQPHEDERQIGLDTDRSFVlYPDTARRETLQAGLNRLIVSVFRRRPRLHYFQGY 134
                 7789999999876889999642.3333334455566778888889999999*************76699999*************************** PP

  RabGAP-TBC  94 ndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpl.etvlrlwDll 191
                 +div++l+ ++l+ee  F +  +    +++rd + ++l+ +   l++l+++l+  d++++  l++    l ++a++ +ltlf++++p   ++ +++D+l
  CDO71045.1 135 HDIVSVLF-LTLPEELHFPVTEKVS-LHRVRDSMGTTLEPVVGLLRILKRILHLADEEFAAILEQ-AAPLPYYALSNLLTLFSHDVPTlPLIQHIFDYL 230
                 ********.9**************9.99***********************************77.88899************99998789999***** PP

  RabGAP-TBC 192 legekfvllrvalailklleee 213
                 l  + + ++++a+a+  + +ee
  CDO71045.1 231 LSRPPIAVVYLAAALTLTRREE 252
                 *999999999999966555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2689.19
//
Query:       CDO71046.1  [L=348]
Description: hypothetical protein BN946_scf184844.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2613.85
//
Query:       CDO71047.1  [L=143]
Description: hypothetical protein BN946_scf184844.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-18   64.4   0.0    1.1e-17   64.1   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   6.2e-22   1.1e-17      10     121 .]      23     134 ..      15     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 6.2e-22
                    S-BSEEEETTEEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE- CS
  Ribonuc_L-PSP  10 pYsqavkagnlvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsaveV 104
                     Ys+av++g  + vsG++++ p +gel  + +++ q+ ++++++ ++++  g + +d+++v++F+++ +d  +v +++ ea+ +  ++ a++ v++
     CDO71047.1  23 GYSRAVRRGSHIAVSGTTAIHPVSGELChPRSAYHQAVAIFAEILRAVQGLGGTAGDIIRVRMFVTEGKDADDVGRALREALGDV-GPAATMIVGA 117
                    7************************************************************************************.6778888999 PP

                    SBSGGG-SEEEEEEEE- CS
  Ribonuc_L-PSP 105 aaLpkgakvEIeaiavv 121
                    + ++ +++vEIea avv
     CDO71047.1 118 RFVSSEMLVEIEADAVV 134
                    9999*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1110.90
//
Query:       CDO71048.1  [L=114]
Description: hypothetical protein BN946_scf184844.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-11   44.0   0.1    2.2e-11   43.8   0.1    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   1.2e-15   2.2e-11      20     120 ..       4     104 ..       1     105 [. 0.91

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.2e-15
                    EEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEE.E-SBSGGG-SE CS
  Ribonuc_L-PSP  20 lvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsav.eVaaLpkgakv 113
                    ++ vsG++ +dp + el  +g+++ q+ ++++++ +v+++ g +  d+V+v++++++ ++  +v +++ ea ++    Pa +++  ++  ++++++
     CDO71048.1   4 QIAVSGTTSIDPVSRELRhPGSAYHQAVAIFAEIVRVVQELGGTARDIVHVRILVTEGKNADDVGRALREATEDVG--PAAVMIfRARFFSFQMLI 97 
                    789************************************************************************5..7777661555566***** PP

                    EEEEEEE CS
  Ribonuc_L-PSP 114 EIeaiav 120
                    EI + a 
     CDO71048.1  98 EIAVDAS 104
                    **99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 920.48
//
Query:       CDO71049.1  [L=496]
Description: hypothetical protein BN946_scf184844.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-10   39.6   0.2    8.9e-10   38.9   0.2    1.4  1  HMG_box    HMG (high mobility group) box
    0.00093   19.7   0.1     0.0019   18.8   0.1    1.5  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.2   9.9e-14   8.9e-10       1      68 [.      86     154 ..      86     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 9.9e-14
                 --SS--HHHHHHHHH.HHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeq.raklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 ++Rp++af+lf++   + + ++   e + + +sk++g +W++l+ ee++ ++ ka+ + ++++++ p+y
  CDO71049.1  86 IPRPPNAFILFRSSFiKNQHVSSEVETNHSTLSKIIGLTWQNLPHEERQFWHTKAKVALEEHKRKFPQY 154
                 68*********998636678899999999**************************************99 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.1e-07    0.0019       6      69 ..      88     151 ..      80     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.1e-07
                 SS--HHHHHHHTTHHHHHHHT--.-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnp.viglaevsklcsekWkalseeeKekYeekAkedkkrydrea 69 
                 +++nA++lf    i++   + ++   + +  sk ++  W++l+ ee++ ++ kAk   ++ +r  
  CDO71049.1  88 RPPNAFILFRSSFIKNQHVS-SEvETNHSTLSKIIGLTWQNLPHEERQFWHTKAKVALEEHKRKF 151
                 689*********99999888.67699*****************************9887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3490.88
//
Query:       CDO71050.1  [L=272]
Description: hypothetical protein BN946_scf184844.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1906.71
//
Query:       CDO71051.1  [L=554]
Description: hypothetical protein BN946_scf184844.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-21   74.5   0.0      9e-21   74.0   0.0    1.2  1  AMP-binding  AMP-binding enzyme
  ------ inclusion threshold ------
      0.017   14.0   0.0      0.029   13.2   0.0    1.2  1  GH3          GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0     1e-24     9e-21      19     351 ..      32     345 ..      23     401 .. 0.74

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1e-24
                  STEEEEHHHHHHHHHHH....HHHHHHTTSSTT-EEEEEESSSHHH.HHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHH CS
  AMP-binding  19 egqtlTYreldervnrl....AagLrslGvkkgdrVaillpnspew.vvallailkaGavvvplnptltaeelayiledseakvliatvdsellekll 111
                  ++  +TY+ + e+ +r+    +  L+s G+k+gd+V+++l+ s+   ++ ++a+  aG ++ +   +++a+ ++ +l++ +a +li  ++++  ++ll
   CDO71051.1  32 KWGLVTYHGFTEALERAtahwSERLTSEGLKQGDVVGMWLKGSHWTdLIHIYAVSAAGYIPEVFGLAFSAAFVRDLLHSHRAHILI--YHDTF-SALL 126
                  5666777766666665511116679988************99876658999***********************************..54444.3343 PP

                  HHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSS.S-EEEEEEHHHHHHHHHHHH..HHHCSCCTTT-EEE CS
  AMP-binding 112 eaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTG.kPKGVmlshrnlvanvaslk..letrfklkeddvvl 206
                  ++ +      +   +    ++++e + ++++ +         + +k+dd+a+i+ TSGTTG +PK V  +h+ lva     +  + +r+  + +  + 
   CDO71051.1 127 PHVD------WQQTTV-PLPKFAELSATNAGIA-----F--LPDVKEDDVAMILHTSGTTGgRPKPVPQTHKWLVAEGEVTWkgVIQRHP-QGQHIIN 209
                  4333......322111.1222333333444333.....3..23589**************559**************8877777554433.2478889 PP

                  ESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEE...EESS-EBHHHH CS
  AMP-binding 207 silplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvl...lggeplspell 300
                   i +++ i g  +++ +   sG+++  + + + + ++ +l+++++ + +++      l +l+e +++++     + l +lr +      g++lsp+  
   CDO71051.1 210 NIGSFSSIGGA-SCITFLSWSGGCLTQSAGREIT-ADEILAMVQQCGLNFLLQYAPWLAKLFEvARQRS-----EVLEALRGMCqiaYTGASLSPADE 300
                  999***99997.7777777788877777766553.45688*********************99665554.....35566666533227********** PP

                  HHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE CS
  AMP-binding 301 rffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkiv 351
                  r++ + +++ +  +Y  TE+++ ++ ++l+  ++    + +p+ +v+++++
   CDO71051.1 301 RWALEQGIP-LTPMYANTECGPLMV-ARLDSGEP----YLRPISEVKCELL 345
                  ******986.**************9.66444432....3356666655555 PP

>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-06     0.029      74     102 ..     160     188 ..     154     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-06
                 SS-SEEEEECCEETTEEEEEEESHHHHHH CS
         GH3  74 epiklfalsSGTtsgksKliPvteeslke 102
                 + + +++ +SGTt+g++K +P t+++l  
  CDO71051.1 160 DDVAMILHTSGTTGGRPKPVPQTHKWLVA 188
                 789999*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3527.60
//
Query:       CDO71052.1  [L=546]
Description: hypothetical protein BN946_scf184844.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-70  237.4   0.1    2.4e-70  236.5   0.1    1.5  1  EAP30     EAP30/Vps36 family


Domain annotation for each model (and alignments):
>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.5   0.1   1.4e-74   2.4e-70       1     236 []     302     527 ..     302     527 .. 0.95

  Alignments for each domain:
  == domain 1  score: 236.5 bits;  conditional E-value: 1.4e-74
       EAP30   1 vGiaglqrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhkakiksdpafraqftkmcaslGvdpl..sskkseslgfl..ellglgdfy 95 
                 +Gia+++r++q+++++++l++e+ + +++ l+a+la+f+++L++ a++h+++i+++p+fr++f++mc ++Gvdpl        ++g +  e+lglgd+ 
  CDO71052.1 302 AGIAAFDRQQQSQRSFAELSSEISQAQVDLLHAQLAQFRSALAHYASTHRDRIRKEPSFRHAFQQMCTTIGVDPLagP-----RKGGWwaEMLGLGDWQ 395
                 6**************************************************************************443.....447777********** PP

       EAP30  96 yeLavqivevclatraengglisleelyalvnrarggv.alvspdDllraiekllvlgsglsvlqvg.gkkvvrSvptelntdqvevlevakrlvslla 192
                 yeL+vqiv+vc +tr++nggli+++el++lv + rg   + +++dD+ r+i++l++l++g++v+ vg gkk++rSvp++l++dq+ vl+va++      
  CDO71052.1 396 YELGVQIVDVCVSTRERNGGLIEMSELIRLVSKLRGVGgDVITEDDVMRSIKTLKPLNAGYEVIDVGgGKKMIRSVPKQLDSDQTVVLAVAQED----- 489
                 ***********************************66678**************************979************************9..... PP

       EAP30 193 ekssgggvtaselaeeeenlgwsvarakeaLee.lereGllwvDd 236
                     gg v+++ l+++    gw+ +ra++aL + l+r+Gl+w D+
  CDO71052.1 490 ----GGRVSEATLVSR---RGWTQERARAALANmLLRDGLCWLDE 527
                 ....779******666...************99899********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3835.70
//
Query:       CDO71053.1  [L=449]
Description: hypothetical protein BN946_scf184844.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3091.03
//
Query:       CDO71054.1  [L=363]
Description: hypothetical protein BN946_scf184844.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-30  106.5   0.0    1.7e-30  106.0   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.071   13.0   0.1    2.3  2  PaREP1        Archaeal PaREP1/PaREP8 family
      0.053   13.7   0.1       0.14   12.3   0.1    1.6  1  TPR_9         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0   2.8e-34   1.7e-30       1     193 [.      27     256 ..      27     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 2.8e-34
                   HHHHHHCT-SEEEEECCTCSHHHHC..................HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHHH CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvsel..................sdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraiel 78 
                   l+a+aeaGfd  E++++dl  ++e                     ++ +++++++++l++ i ++++f++f++ ++     + r+  ++++  + + 
    CDO71054.1  27 LRAIAEAGFDQAEVAFPDLEAYAEQeypgyqklddsgkgdldkLVQASEKIWQLCEALDISILAVHPFSQFEGYEDK----EkRAIRFERAAAWFKV 119
                   689***************************************9999***************************8874....235667********** PP

                   HHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHT..SEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHH..... CS
  AP_endonuc_2  79 aaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekeg..vklalEtlagsgvelgdeelarlldavdspnvgvclDtgHllia..... 168
                    +aL++ +l+++     + p++s  ++++ +a++l++lad+a+ +   +++a+E +a+  + + +e++++++++vd+pn+g+clDt+++ ++     
    CDO71054.1 120 LKALNCQMLQVG-----STPDESTSSDYDVIARDLRQLADEAAVQKppIRIAYELWAWGAHVNTWEHIWEVCKRVDRPNFGLCLDTFQICARayadp 211
                   ************.....55***********************966678*********************************************9999 PP

                   ...............TTTHHHHHHHHHGG............EEEEEE.EESS CS
  AP_endonuc_2 169 ...............eedvddalraladr............ikhvHikDakg 193
                                   +++++                    i++++i+D+ +
    CDO71054.1 212 tssdgllrnppagsaNTQLAS-------SlkmlsttvpsekIFYFQISDGSR 256
                   999999965554444333333.......345555559999999999999877 PP

>> PaREP1  Archaeal PaREP1/PaREP8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.2e-05     0.071      21      66 ..      69     115 ..      64     157 .. 0.76
   2 ?   -1.4   0.0      0.36   2.2e+03      10      34 ..     163     187 ..     160     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
      PaREP1  21 dlrqAaeKaykAvkal.vkalaeknnlklleeaeekerwstkellka 66 
                 +l+qA+eK+++ ++al +++la++   +   ++++++r    e+  a
  CDO71054.1  69 KLVQASEKIWQLCEALdISILAVHPFSQFEGYEDKEKRAIRFERAAA 115
                 589************98999999965555544444444433344444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.36
      PaREP1  10 leeAeellekGdlrqAaeKaykAvk 34 
                 ++ A el++ G +++  e +++ +k
  CDO71054.1 163 IRIAYELWAWGAHVNTWEHIWEVCK 187
                 578999********99999999887 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.3e-05      0.14      24      59 ..      17      52 ..       4      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
       TPR_9 24 laPddpeerrdRGlllaqlGclsaAladLeaylala 59
                ++P +   +  R++++a  ++ ++A  dLeay++++
  CDO71054.1 17 MHPSHTLPLKLRAIAEAGFDQAEVAFPDLEAYAEQE 52
                7899999999***********************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2516.86
//
Query:       CDO71055.1  [L=309]
Description: hypothetical protein BN946_scf184844.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-08   31.7   0.0    1.8e-06   27.5   0.0    2.5  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
     0.0006   19.4   0.0      0.011   15.3   0.0    2.1  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     2e-10   1.8e-06      14     275 ..      17     298 ..       5     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2e-10
                  -----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE-S...S---SS-SS CS
  Meth_synt_2  14 evrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiivg...dvsrpaamt 108
                   + + r ++++g++s+ee ++   e+i++vvr+q +lg+  + +ge  R    + f e+l+g+  +++   + ++ + +r + ++g   d +r+ a  
   CDO71055.1  17 VLLQKRDAFQQGKCSAEELRACEDENIAEVVRMQLDLGLTTVTDGEYRRIIFYDGFFEHLGGLKVLNDPPQNIFQGKLERTGPLYGeafDFLRKVAGP 114
                  55678999***************************************999999**********88888877888888888888999555678888888 PP

                  THHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-T....TSSTT.--SSGGGHHHHHHH.HHHHH CS
  Meth_synt_2 109 vkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDep....alreG.lplkkadwaayldw.aveaf 200
                   ++ +l+  + + +      G  t    ++       +e  a++a   ++e++dL   G+  iQiD+p    +  e  + l+++d ++  +   +  +
   CDO71055.1 115 ENVDKLKHTMGSPEWYHFRHGKHTYEPTAYAN----DDEYFADLAKIYQAEIHDLYVRGCRRIQIDDPiltcFCDESyRQLMEQDGVNAEELfDTYIR 208
                  899999999999999*********87666666....468999**************************555433333144444443333222023344 PP

                  HHHHTTS-T..TSEEEEEES-S--CCCH.............HHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--T CS
  Meth_synt_2 201 rldtiaaad..dtqvhtHlCyselndil.............saiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvps 275
                   l+ ++ ++  d  +  HlC  +++ +              +  ++ld+D   +e   ++    e l++   ++ v+lG++ ++ p v s
   CDO71055.1 209 VLNGCIQNKppDLAMGIHLCRGNVKLDRqpftrgpydriakKLFNDLDFDTYYLEYDTEKAGSFEPLKHLPPAKRVVLGLVSTKIPEVLS 298
                  556666554225667789998877665556778888666655557899999999999999999999999999999999999999998866 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.016   1.4e+02      21      65 ..      23      70 ..      17      84 .. 0.83
   2 !   15.3   0.0   1.2e-06     0.011     171     219 ..     145     193 ..     134     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.016
                 HHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---...SS- CS
  Meth_synt_1 21 esywkgkiseeeLektakeLrakhwkkqkeagidlipvndfs...lYD 65
                 +++ +gk+s+eeL++  +e  a+ ++ q + g+++++ +++    +YD
   CDO71055.1 23 DAFQQGKCSAEELRACEDENIAEVVRMQLDLGLTTVTDGEYRriiFYD 70
                 68999******************************9988863222566 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.2e-06
                  .-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHH CS
  Meth_synt_1 171 veklellekLlpvYkelleeLkeagvewvqidEPalvldlekeelealk 219
                  ++  e + +L ++Y++ +++L  +g++ +qid+P+l++  +++ +++++
   CDO71055.1 145 ANDDEYFADLAKIYQAEIHDLYVRGCRRIQIDDPILTCFCDESYRQLME 193
                  46678899****************************9988877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2269.28
//
Query:       CDO71056.1  [L=751]
Description: hypothetical protein BN946_scf184844.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.86    9.9   8.8        1.9    8.8   8.8    1.5  1  DUF755    Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.8   0.00011       1.9      42     118 ..     117     195 ..     103     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00011
      DUF755  42 kqLlkEcqktsqLiqlsqqlqqkk...qkkrkeqkkssqthkkkkkksrnvssrsakkksakkrkksssSSsssssssss 118
                 k+L +++ +t++L+  +   +++    +  r + k+  + ++ +++ s++vs+r++++ ++k++ k+++ S++s    s+
  CDO71056.1 117 KKLERDLGNTKRLQRDLADRKRRLesrSAARGRAKTVGSRSEPHTRASSHVSKRRRRRDRRKHS-KRQTASDESRVGAST 195
                 7899999999999988777655545433334444455555566677788899999998888888.666666666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5290.17
//
Query:       CDO71057.1  [L=242]
Description: hypothetical protein BN946_scf184844.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1842.18
//
Query:       CDO71058.1  [L=162]
Description: hypothetical protein BN946_scf184844.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1154.27
//
Query:       CDO71059.1  [L=681]
Description: hypothetical protein BN946_scf184844.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-32  110.2   7.5    1.2e-06   28.4   0.1    6.6  6  Kelch_4   Galactose oxidase, central domain
    3.9e-31  106.7   7.7      1e-07   32.1   0.1    6.5  6  Kelch_3   Galactose oxidase, central domain
    1.2e-21   76.2   7.5    5.2e-07   29.7   0.0    5.0  5  Kelch_6   Kelch motif
    2.5e-21   75.0   9.1    5.4e-06   25.9   0.0    5.6  5  Kelch_1   Kelch motif
    5.6e-18   64.8   0.1    5.6e-18   64.8   0.1    2.6  3  DUF4110   Domain of unknown function (DUF4110)
    2.6e-17   62.4  13.3    7.3e-05   22.7   0.1    6.0  6  Kelch_5   Kelch motif
    8.7e-16   57.2  10.8    3.6e-05   23.6   0.1    5.6  4  Kelch_2   Kelch motif
  ------ inclusion threshold ------
       0.82    8.9  26.6       0.27   10.5  14.3    2.3  2  BUD22     BUD22


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   5.4e-10   1.2e-06       2      44 ..      77     124 ..      76     131 .. 0.90
   2 !   23.5   0.0   1.8e-08     4e-05       1      46 [.     132     184 ..     132     190 .. 0.84
   3 !   25.9   0.2   3.3e-09   7.3e-06      13      44 ..     201     235 ..     190     245 .. 0.91
   4 !    8.0   0.0    0.0013       2.8       1      34 [.     246     286 ..     246     315 .. 0.91
   5 !    9.2   0.0   0.00054       1.2       2      41 ..     324     373 ..     323     388 .. 0.85
   6 !   13.6   0.0   2.2e-05      0.05       1      35 [.     455     491 ..     455     495 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.4e-10
     Kelch_4   2 Raghsatsipd.gtiylfGGrgedg....tllndlylldlstntWrrl 44 
                 Ra++++t +p+ + ++++GG+   +     +++d+y+++   n+Wr+ 
  CDO71059.1  77 RANATLTPCPNgNHLWCIGGEFFSDdgkaHFYSDVYRYSPDKNEWRKF 124
                 9********9968**********9999******************985 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.8e-08
     Kelch_4   1 pRaghsatsipd..gtiylfGGrgedg.....tllndlylldlstntWrrlgs 46 
                 pR  h++++ p   g++ylfGG+ +         + d + +d+st tW+r+++
  CDO71059.1 132 PRSAHAVVASPAggGKLYLFGGEFSSLyqnsfHHYRDFWCFDISTHTWERIET 184
                 8999******55448**********648999999999999**********955 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 3.3e-09
     Kelch_4  13 gtiylfGGrgedg...tllndlylldlstntWrrl 44 
                  +i+lfGG +++g     lndl+++d++  +W+++
  CDO71059.1 201 HYIVLFGGFYDPGiktNYLNDLWIFDTQEYKWKQI 235
                 68*******************************98 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0013
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg........tllndlyll 34 
                 pR g+s+ s+p   i l+GG+  +           l+d+++l
  CDO71059.1 246 PRSGFSFLSTP-EGILLHGGYCKEYikgsrpvgVMLDDTWFL 286
                 89********9.58888******99999****9*******97 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00054
     Kelch_4   2 Raghs.atsipdgtiylfGGrgedg........tllndlylldlstn.tW 41 
                 R g++ a +  ++  +lfGG ++++         ++ndly + ++ n +W
  CDO71059.1 324 RSGCTmASWSAKNMGVLFGGVTDEDtgeetlesVFHNDLYGYQITGNgRW 373
                 566663666699************99**************9999887566 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 2.2e-05
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg...tllndlylld 35 
                 pR ++++ ++ ++t+y++GG+ e+g    +l+d y l 
  CDO71059.1 455 PRYNAMLAVL-RNTLYIYGGIFEKGsreYTLDDFYSLQ 491
                 7888888888.69************9998999877665 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.75   1.7e+03      27      47 ..      55      83 ..      54      84 .. 0.65
   2 !   32.1   0.1   4.5e-11     1e-07       1      48 [.      88     140 ..      88     140 .. 0.88
   3 !   31.4   0.1   7.4e-11   1.7e-07       1      46 [.     145     196 ..     145     197 .. 0.87
   4 !   29.2   0.0   3.5e-10   7.8e-07       2      45 ..     201     251 ..     200     254 .. 0.91
   5 ?    3.7   0.1     0.035        79       4      31 ..     338     373 ..     335     387 .. 0.76
   6 !    8.3   0.1    0.0013       2.9       2      28 ..     466     494 ..     465     500 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.75
     Kelch_3 27 dtntWaei........aslppaRaghaat 47
                d+ +W+e           +p+ Ra++++t
  CDO71059.1 55 DKREWEEAhkvteelvEGPPSRRANATLT 83
                666777555555444455688*****987 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 4.5e-11
     Kelch_3   1 gdrlyifGGlgd..dg.qdrlndvyvydldtntWaei..aslppaRaghaata 48 
                 g+ l+ +GG+ +  dg   +++dvy+y++d+n+W++   +++p++R+ ha++a
  CDO71059.1  88 GNHLWCIGGEFFsdDGkAHFYSDVYRYSPDKNEWRKFvsPTCPGPRSAHAVVA 140
                 577888999999997769999**************6666**********9975 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 7.4e-11
     Kelch_3   1 gdrlyifGGlgd....dgqdrlndvyvydldtntWaei..aslppaRaghaa 46 
                 g++ly+fGG+      ++  ++ d++ +d++t+tW++i     p+aR+gh +
  CDO71059.1 145 GGKLYLFGGEFSslyqNSFHHYRDFWCFDISTHTWERIetKIRPSARSGHRM 196
                 689********88886667777**************9966888*******77 PP

  == domain 4  score: 29.2 bits;  conditional E-value: 3.5e-10
     Kelch_3   2 drlyifGGlgddg..qdrlndvyvydldtntWaei.....aslppaRagha 45 
                 +++++fGG+ d+g  +++lnd++ +d++  +W++i     ++ p++R+g++
  CDO71059.1 201 HYIVLFGGFYDPGikTNYLNDLWIFDTQEYKWKQIefketDRRPSPRSGFS 251
                 79*********77769999**************999999899*******98 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.035
     Kelch_3   4 lyifGGlgd.dgqdrl......ndvyvydldtn.tW 31 
                  ++fGG +d d+++ +      nd+y y++  n  W
  CDO71059.1 338 GVLFGGVTDeDTGEETlesvfhNDLYGYQITGNgRW 373
                 6899999999665555667888******99555366 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0013
     Kelch_3   2 drlyifGGlgd.dgqdrl.ndvyvydldt 28 
                 ++lyi+GG    ++++++  d+y+++ld+
  CDO71059.1 466 NTLYIYGGIFEkGSREYTlDDFYSLQLDK 494
                 89********955555559******9996 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   7.1e-06     0.016      11      46 ..      88     127 ..      76     133 .. 0.75
   2 !   28.1   0.1   7.4e-10   1.7e-06       2      45 ..     133     184 ..     132     189 .. 0.82
   3 !   29.7   0.0   2.3e-10   5.2e-07       2      45 ..     191     237 ..     190     243 .. 0.92
   4 ?   -3.1   0.0       5.1   1.1e+04       1      21 [.     246     266 ..     246     269 .. 0.85
   5 ?    3.9   0.0     0.032        71       7      23 ..     461     477 ..     455     494 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.1e-06
     Kelch_6  11 ggkiYifGGytds....spylnkvwvydpetksWeqlppl 46 
                 g++++++GG   s      ++++v++y+p+ + W++  ++
  CDO71059.1  88 GNHLWCIGGEFFSddgkAHFYSDVYRYSPDKNEWRKFVSP 127
                 46********98899**6677999***********74332 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 7.4e-10
     Kelch_6   2 raghslvs...vggkiYifGGytds.....spylnkvwvydpetksWeqlpp 45 
                 r +h++v+    ggk+Y+fGG   s     + +++++w++d++t++We+++ 
  CDO71059.1 133 RSAHAVVAspaGGGKLYLFGGEFSSlyqnsFHHYRDFWCFDISTHTWERIET 184
                 56666655441447*********99***********************9975 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 2.3e-10
     Kelch_6   2 raghslvsvggkiYifGGytds...spylnkvwvydpetksWeqlpp 45 
                 r gh ++ +  +i++fGG +d+   ++yln++w++d +  +W+q++ 
  CDO71059.1 191 RSGHRMAMWKHYIVLFGGFYDPgikTNYLNDLWIFDTQEYKWKQIEF 237
                 88999***************************************975 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5.1
     Kelch_6   1 praghslvsvggkiYifGGyt 21 
                 pr g+s+ s  + i + GGy+
  CDO71059.1 246 PRSGFSFLSTPEGILLHGGYC 266
                 688999999999999999997 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.032
     Kelch_6   7 lvsvggkiYifGGytds 23 
                 l++  +++Yi+GG    
  CDO71059.1 461 LAVLRNTLYIYGGIFEK 477
                 37899********8654 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1     6e-08   0.00013      11      41 ..      88     123 ..      83     128 .. 0.93
   2 !   18.8   1.4   4.1e-07   0.00092       7      42 ..     141     182 ..     133     185 .. 0.84
   3 !   25.9   0.0   2.4e-09   5.4e-06       1      41 [.     190     234 ..     190     236 .. 0.96
   4 ?   -2.0   0.0       1.3   2.8e+03       1      22 [.     246     267 ..     246     273 .. 0.87
   5 !    8.5   0.0   0.00067       1.5       1      23 [.     455     481 ..     455     500 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6e-08
                 TTEEEEEEEBCS.....SSBEEEEEEEETTTTEEEE CS
     Kelch_1  11 ggkiYviGGsdg.....gnalssvevyDpetntWre 41 
                 g+++ +iGG ++       + s+v++y+p +n+Wr+
  CDO71059.1  88 GNHLWCIGGEFFsddgkAHFYSDVYRYSPDKNEWRK 123
                 89********************************98 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.1e-07
                 EEEETTEEEEEEEBCS......SSBEEEEEEEETTTTEEEEE CS
     Kelch_1   7 avvvggkiYviGGsdg......gnalssvevyDpetntWrel 42 
                 + + ggk+Y +GG ++          ++++++D  t+tW+++
  CDO71059.1 141 SPAGGGKLYLFGGEFSslyqnsFHHYRDFWCFDISTHTWERI 182
                 5678************998644444589************97 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 2.4e-09
                 BBBSEEEEEETTEEEEEEEBCS....SSBEEEEEEEETTTTEEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg....gnalssvevyDpetntWre 41 
                 ar+g+ ++   ++i  +GG+ +     n+l++++++D+ + +W +
  CDO71059.1 190 ARSGHRMAMWKHYIVLFGGFYDpgikTNYLNDLWIFDTQEYKWKQ 234
                 69*****************************************87 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.3
                 BBBSEEEEEETTEEEEEEEBCS CS
     Kelch_1   1 aragagavvvggkiYviGGsdg 22 
                 +r+g+++ +  + i   GG++ 
  CDO71059.1 246 PRSGFSFLSTPEGILLHGGYCK 267
                 7999999999999999999975 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.00067
                 BBBSEEEEEETTEEEEEEEBCS....S CS
     Kelch_1   1 aragagavvvggkiYviGGsdg....g 23 
                 +r++a  +v+++ +Y+ GG ++     
  CDO71059.1 455 PRYNAMLAVLRNTLYIYGGIFEkgsrE 481
                 6888889*************9975543 PP

>> DUF4110  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   3.4         8   1.8e+04      33      55 ..      17      39 ..       9      71 .. 0.53
   2 ?   -3.9   0.6       6.8   1.5e+04      65      77 ..     553     565 ..     547     573 .. 0.51
   3 !   64.8   0.1   2.5e-21   5.6e-18       3      77 ..     586     655 ..     584     670 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8
     DUF4110 33 eslkekgaekkseKelkkeafel 55
                + +k+++a++k e++++++a + 
  CDO71059.1 17 KAAKKAKAAQKVERKVQRKATKT 39
                33444333446666666666543 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.8
     DUF4110  65 pvLeelraledeq 77 
                 + +e l+ +e+e+
  CDO71059.1 553 KTVEVLETIEEEK 565
                 3344444444443 PP

  == domain 3  score: 64.8 bits;  conditional E-value: 2.5e-21
     DUF4110   3 lddslptPrpgEslrdFfaRTseeWqelaieslkekgaekkseKelkkeafelAeerywelrpvLeelraledeq 77 
                 ++d   tP pgE+l++F+aR++e+W ++a + +++     +++K+l++++f lA+ery  ++pvLee++++ +e 
  CDO71059.1 586 AEDVISTPLPGETLAMFYARSREYWAQKAFSIASD-----SRGKQLRRDGFTLASERYATYKPVLEEVERILAEA 655
                 678889****************************9.....8****************************998872 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0034       7.5       2      40 ..      74     117 ..      72     119 .. 0.72
   2 !   15.7   0.3   4.8e-06     0.011       2      26 ..     130     159 ..     130     177 .. 0.74
   3 !   22.7   0.1   3.3e-08   7.3e-05       2      39 ..     188     227 ..     188     230 .. 0.93
   4 ?    3.5   0.0     0.034        76       2      23 ..     244     265 ..     244     289 .. 0.80
   5 ?   -1.2   0.1      0.98   2.2e+03      19      39 ..     340     367 ..     339     370 .. 0.60
   6 !   18.4   0.0   7.2e-07    0.0016       1      39 [.     452     492 ..     452     494 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0034
     Kelch_5   2 PppRaghcavtv..sekiYvyGGkvg...rdgsvsddvyvLdlp 40 
                 P+ Ra++    +  ++ ++++GG         ++++dvy++++ 
  CDO71059.1  74 PSRRANATLTPCpnGNHLWCIGGEFFsddGKAHFYSDVYRYSPD 117
                 3345555555574347899999999667778888*******976 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.8e-06
     Kelch_5   2 PppRaghcavtv...sekiYvyGGkvg..r 26 
                 P pR+ h++v+    ++k+Y++GG  +   
  CDO71059.1 130 PGPRSAHAVVASpagGGKLYLFGGEFSslY 159
                 99**********5555********886553 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.3e-08
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg..rdgsvsddvyvLdl 39 
                 P++R+gh +++++++i ++GG+       ++ +d++++d+
  CDO71059.1 188 PSARSGHRMAMWKHYIVLFGGFYDpgIKTNYLNDLWIFDT 227
                 99********************9777999*********97 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.034
     Kelch_5   2 PppRaghcavtvsekiYvyGGk 23 
                 P+pR+g+++   +e i+++GG+
  CDO71059.1 244 PSPRSGFSFLSTPEGILLHGGY 265
                 99*******************9 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.98
     Kelch_5  19 vyGGkv....g..rdgsvs.ddvyvLdl 39 
                 ++GG++    g  + +sv+ +d+y +++
  CDO71059.1 340 LFGGVTdedtGeeTLESVFhNDLYGYQI 367
                 7999995543255555556667776665 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 7.2e-07
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvg..rdgsvsddvyvLdl 39 
                 +P pR+++  +++ + +Y+yGG+    +++   dd+y L+l
  CDO71059.1 452 VPLPRYNAMLAVLRNTLYIYGGIFEkgSREYTLDDFYSLQL 492
                 6***********************55477777899996655 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.3    0.0023       5.2      18      44 ..      95     123 ..      86     123 .. 0.84
   2 !   17.8   1.9   1.1e-06    0.0024       1      45 [.     132     182 ..     132     185 .. 0.82
   3 !   23.6   0.1   1.6e-08   3.6e-05       1      43 [.     190     233 ..     190     236 .. 0.95
   4 !    9.4   0.0   0.00047         1       1      21 [.     455     481 ..     455     524 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0023
     Kelch_2  18 GGa..htdnpnlsssdvhvldlekhvWee 44 
                 GG    +d++ ++ sdv+ + ++k++W++
  CDO71059.1  95 GGEffSDDGKAHFYSDVYRYSPDKNEWRK 123
                 55566678888999*************85 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.1e-06
     Kelch_2   1 rrgghsssvp...ggkiyvvGGa...htdnpnlsssdvhvldlekhvWeev 45 
                 +r+ h+++ +   ggk+y++GG     ++n+ +  +d++++d ++h+We+ 
  CDO71059.1 132 PRSAHAVVASpagGGKLYLFGGEfssLYQNSFHHYRDFWCFDISTHTWERI 182
                 5777777755599**********998677777777899**********985 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 1.6e-08
     Kelch_2   1 rrgghsssvpggkiyvvGGa.htdnpnlsssdvhvldlekhvWe 43 
                 +r+gh ++++ + i+++GG+ +++ +  + +d++++d+++++W+
  CDO71059.1 190 ARSGHRMAMWKHYIVLFGGFyDPGIKTNYLNDLWIFDTQEYKWK 233
                 699*****************99999******************8 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00047
     Kelch_2   1 rrgghsssvpggkiyvvGGa......h 21 
                 +r+  + +v+++ +y++GG+      +
  CDO71059.1 455 PRYNAMLAVLRNTLYIYGGIfekgsrE 481
                 7999****************5444442 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.4    0.0099        22     150     197 ..      12      57 ..       1     106 [. 0.45
   2 ?   10.5  14.3   0.00012      0.27     139     265 ..     380     559 ..     345     586 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0099
       BUD22 150 kkkkkkkkkkkkeeee......eeesdkeeesedsedeekeeseddeeeeeede 197
                  k+++k++kk+k++++      +++++ ++e ed+++        d e+  +++
  CDO71059.1  12 NKAAAKAAKKAKAAQKverkvqRKATKTKDELEDDDQ--------DLESILDKR 57 
                 1111111111111111111111122222222222222........111111111 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00012
       BUD22 139 kkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed....eekeeseddeeeeeededdedaee............................. 204
                 k k k +++kk + ++  + +++e+++ +++++++e+ d+e+    +++++s ++ ++ ++de d    +                             
  CDO71059.1 380 KPKRKGTQKKKVAPAQPTRPDTDEDDAYDDRGSSDEERDGEKtvksSKASTSPSKARAIQDDEIDP---Ddpsltvplprynamlavlrntlyiyggif 475
                 322222222222222222222222222446666666666666543222222222222222222222...25779************************* PP

       BUD22 205 .....................deedeeaeerelaqydglla..................sddededeyneetdeesseesdssdssesasesesessek 264
                                                                            sdd+d+d  ++++d ++ +++ + d++es     +e++++
  CDO71059.1 476 ekgsreytlddfyslqldkldR------------------YvclkaseiviaegdeessSDDDDDD--DDDDDGDDTADEGDRDDTESVTVVGEEEEKT 554
                 8887755555555544333331..................03344555555566666545555554..5566666666666666666666665555555 PP

       BUD22 265 ....k 265
                     +
  CDO71059.1 555 vevlE 559
                 33431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1850  (0.103185); expected 358.6 (0.02)
Passed bias filter:                      941  (0.0524848); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 4238.20
//
Query:       CDO71060.1  [L=303]
Description: hypothetical protein BN946_scf184844.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-23   81.2   0.0    8.5e-23   80.8   0.0    1.2  1  Lipase_3  Lipase (class 3)


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   4.7e-27   8.5e-23       1     140 [.     104     244 ..     104     246 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 4.7e-27
                 EEEE----..------------EEE-HHHH-G...TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS- CS
    Lipase_3   1 vvafRGte..sakdwltdldfslteakellek...eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenek 94 
                 vv+ +Gt+  ++  +l+d+d+ ++++++ l     ++++ hsgf  + +   +++vl+ +++ l+ky   +++ tGHSLG+a+AlL a++l  + ++  
  CDO71060.1 104 VVSHQGTDtsEILPLLEDADIVQERLDSKLFPglsSSIEAHSGFAGSQK-RSASAVLSAVNTALSKYGVSKVTTTGHSLGAAIALLDAVYLHLQIPH-- 199
                 6788999876788999******99999987768999************9.9999****************************************977.. PP

                 --EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3  95 kkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                  +++ v +G Prvgn+efa++vd+q  + v+++ n++D+vP lp+ 
  CDO71060.1 200 ATIKFVGYGLPRVGNQEFANYVDAQPIS-VTHINNKEDLVPILPGR 244
                 ***********************88887.**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2262.74
//
Query:       CDO71061.1  [L=110]
Description: hypothetical protein BN946_scf184844.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-26   90.9   8.1      7e-26   90.7   8.1    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   8.1   3.9e-30     7e-26       1      80 []      30     108 ..      30     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 3.9e-30
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  Cntg+++CC++v+ a+d ++v++llgllg+++ dlt ++g++Csp++v+gvg+gs+C+++pvCCenns +glin+gC+pi
   CDO71061.1  30 CNTGPIHCCQDVRPASD-ASVSTLLGLLGVVVGDLTASIGIQCSPLSVIGVGSGSACSSTPVCCENNSVGGLINIGCVPI 108
                  *************9966.689**********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 813.93
//
Query:       CDO71062.1  [L=223]
Description: hypothetical protein BN946_scf184844.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1591.44
//
Query:       CDO71063.1  [L=229]
Description: hypothetical protein BN946_scf184844.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   23.5   1.5    9.5e-05   22.7   0.4    1.9  2  CPBP       CPBP intramembrane metalloprotease
  ------ inclusion threshold ------
       0.13   11.3   0.1       0.21   10.6   0.1    1.2  1  FUSC-like  FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.36   3.2e+03      53      53 ..      93      93 ..      59     141 .. 0.54
   2 !   22.7   0.4   1.1e-08   9.5e-05       4      50 ..     170     217 ..     167     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.36
                G CS
        CPBP 53 l 53
                 
  CDO71063.1 93 S 93
                2 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.1e-08
                 THHHHHHHHHHHHHHHHHHHTTCHHHHHHHH..S-HHHHHHHHHHHHH CS
        CPBP   4 lllvfllalllapllEEllfRglllqllqer.gsstlailissilFgl 50 
                   ++ ++++ll+pl+EE++fR+++l   +    s+   i+++ ++Fg+
  CDO71063.1 170 TTWIGIRNYLLGPLTEEIVFRACILAVYHMAgASRSKMIFLTPLAFGF 217
                 57999*********************99888655589*********97 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.3e-05      0.21      43      82 ..     180     219 ..     155     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.3e-05
   FUSC-like  43 lGqryatiafatLlvaiytmlgasqepeiwqqplllllGa 82 
                 lG+ +  i f + ++a+y m gas++  i+  pl++ +G+
  CDO71063.1 180 LGPLTEEIVFRACILAVYHMAGASRSKMIFLTPLAFGFGT 219
                 8999*********************99***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1603.49
//
Query:       CDO71064.1  [L=334]
Description: hypothetical protein BN946_scf184844.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2247.03
//
Query:       CDO71065.1  [L=203]
Description: hypothetical protein BN946_scf184844.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-11   42.6  17.8    5.4e-10   39.2  17.4    2.4  2  zf-MYND          MYND finger
  ------ inclusion threshold ------
       0.23   11.8  12.5       0.59   10.5  12.5    1.7  1  zf-C6H2          zf-MYND-like zinc finger, mRNA-binding
       0.26   11.4  10.3        8.3    6.6   9.4    2.5  2  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
       0.26   11.6   2.0         14    6.0   0.0    2.8  3  Viral_Beta_CD    Viral Beta C/D like family


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.089     4e+02      12      26 ..      61      95 ..      52     101 .. 0.62
   2 !   39.2  17.4   1.2e-13   5.4e-10       1      38 []     148     191 ..     148     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.089
                E-TTT....................S-SEESSHHH CS
     zf-MYND 12 kCagC....................ksvfYCskeC 26
                 C+ C                    + v YC   C
  CDO71065.1 61 TCEFCgaparetdvqnlswqhldppRLVIYCHFVC 95
                56666665555555555555555556667776555 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 1.2e-13
                 -TTT--.......B-SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   1 CavCgk......aealkkCagCksvfYCskeCqradwksHkteC 38 
                 Ca C++      + +lkkC++Ck ++YC++eCq++dw++Hk  C
  CDO71065.1 148 CACCERdetakdDASLKKCSKCKLTRYCGAECQKKDWPRHKVVC 191
                 9*****98888777777**************************9 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  12.5   0.00013      0.59       5      44 ..     155     190 ..     148     193 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
     zf-C6H2   5 eCgkeass.LqCptClklgikesfFCsqeCFkknwkkHkal 44 
                 e  k+  s  +C +C   +++   +C+ eC kk+w+ Hk +
  CDO71065.1 155 ETAKDDASlKKCSKC---KLT--RYCGAECQKKDWPRHKVV 190
                 443433352567777...544..79**************98 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.025   1.1e+02      12      26 ..      55      69 ..      35      79 .. 0.85
   2 ?    6.6   9.4    0.0018       8.3       2      51 ..     148     198 ..     147     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.025
    zf-Mss51 12 pkhvdfeCpdCGipt 26
                +++ + +C  CG p 
  CDO71065.1 55 KHSKNWTCEFCGAPA 69
                4567899*****996 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0018
    zf-Mss51   2 CPvpkhkqtapkhvdf.eCpdCGiptycseehwedDyeahleicdtLrqvn 51 
                 C  ++ ++ta+ + ++ +C +C +  yc  e  ++D  +h+ +c+  + vn
  CDO71065.1 148 CACCERDETAKDDASLkKCSKCKLTRYCGAECQKKDWPRHKVVCKMVHSVN 198
                 888998988777776637*****************************9999 PP

>> Viral_Beta_CD  Viral Beta C/D like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0096        43       2      23 ..      55      74 ..      54      82 .. 0.85
   2 ?    6.0   0.0    0.0031        14      69     114 ..      91     135 ..      86     148 .. 0.72
   3 ?   -1.4   0.6      0.63   2.8e+03      26      26 ..     165     165 ..     140     201 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0096
  Viral_Beta_CD  2 lhsseCvCsdCsselPssetkv 23
                    hs++ +C++C  + P+ et v
     CDO71065.1 55 KHSKNWTCEFC--GAPARETDV 74
                   7**********..999998865 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0031
  Viral_Beta_CD  69 cvylksi.kteedavltyfyqdlnsveiklgkgpldPeviaaiksfq 114
                    c ++  + ++++   lt  +q ln +++  g gp+ P   +    +q
     CDO71065.1  91 CHFVCDMdEQHVRRGLTATHQYLNMMNMMSGGGPVAPA--RNFDAWQ 135
                    4444444146778889************99999**995..4455555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.63
  Viral_Beta_CD  26 g 26 
                     
     CDO71065.1 165 K 165
                    1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1348.33
//
Query:       CDO71066.1  [L=491]
Description: hypothetical protein BN946_scf184844.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-86  291.1  19.5    8.3e-78  262.3  11.1    2.0  2  Sugar_tr  Sugar (and other) transporter
      4e-15   55.6  39.5    1.3e-06   27.6  26.1    3.1  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   1.8   1.2e-13   1.1e-09       7      90 ..      20      97 ..      13      98 .. 0.82
   2 !  262.3  11.1   9.2e-82   8.3e-78     110     452 .]      93     441 ..      92     441 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.2e-13
                HHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH CS
    Sugar_tr  7 lgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfviga 90
                  g ll gYd gv+++++  ++++ + + +   ++       +g iv+i+ +G+++Gsl++ ++g+ +GRk  ++++av +++g+
  CDO71066.1 20 CQGfLLLGYDQGVMSGIIGANNQFGKDFGNPDPTT-------QGTIVAIYDIGCAVGSLMTFFWGESIGRKRMIMAGAVTMLVGT 97
                234599************99995555555444443.......479************************************9995 PP

  == domain 2  score: 262.3 bits;  conditional E-value: 9.2e-82
                 HHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHH CS
    Sugar_tr 110 vlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeak 208
                 +lvG g G+ s  +P+y+sE +  ++Rg+lv l+ + +++G ++a+++++g++++s+  +wr+++g+q+v+al l++ +l+lP+SPr+ + +g++ee  
  CDO71066.1  93 MLVGTGNGFNSSSIPVYQSETCGGMIRGTLVCLNSTVTIIGLVIAYWLDYGMSYVSGPAQWRLPIGFQAVFALCLFLQVLVLPDSPRWCMAHGRKEEGV 191
                 699******************************************************9***************************************** PP

                 HHHHHHHHC.HHHHHHHHHHHHHHHHHHH.........HTTHHHHSH.....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH.SS-THH..HHHHHHHH CS
    Sugar_tr 209 evlaklrge.edadrelaeekdsleaeqeee....kaswkellsskt..vrqrlligvvlqifqqltGinaimyysptifen.lglsks..llvtiivg 297
                 ++la+l++  + +d+ + e+ +++e +  +e       ++ell+     + +r+ ++++++++qq+tG n+i y++p++++n +gl+    l+  + ++
  CDO71066.1 192 RILAQLEDRdSIDDPVVIEKCREIEVSLAQEsaggPFRYRELLQGGPlgNIRRICLCIGINVMQQFTGSNMINYLAPVVYQNtMGLTRNlsLILGGFTS 290
                 *****99986444444555555555554444455599999999995599*******************************872588888999999**** PP

                 HHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHH CS
    Sugar_tr 298 vvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnw 396
                 v+ ++a+f+ +++vdrfGRR ll+++a+g ++cf+i +   +ll+ ++k+a+++a++++++f ++ ++g  p+pw++ +E++++++R+ ++ai+ + nw
  CDO71066.1 291 VTYMIASFIPLWTVDRFGRRVLLMTSATGLSVCFIIAS---ILLSVGTKSAAYGATAMVFIFQIFLGIGYLPIPWLYPAEISTTRIRARGSAISSFFNW 386
                 *************************************8...4444444679************************************************ PP

                 HHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 397 lanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ++ f++  ++p +  +ig + vf++fa++++l +  v++f+petkg++le+++ +f
  CDO71066.1 387 MCVFAVVEMTPPAIANIG-WRVFIIFAIFNALWVPLVYIFFPETKGLELEDVDHIF 441
                 ******************.********************************99876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.7   5.9e-10   5.3e-06      15      78 ..      36      98 ..      18     110 .. 0.79
   2 !   19.1   8.2   5.6e-08   0.00051      92     259 ..      92     298 ..      90     299 .. 0.74
   3 !   27.6  26.1   1.5e-10   1.3e-06       3     176 ..     251     430 ..     249     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.9e-10
       MFS_1 15 lgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglll 78
                ++ a     ++d+g  +p+++g+++++y +g+av+sl + ++++ +Gr+r++++g++++++g + 
  CDO71066.1 36 IIGANN-QFGKDFGnPDPTTQGTIVAIYDIGCAVGSLMTFFWGESIGRKRMIMAGAVTMLVG-TG 98
                222333.467777789*********************************************9.54 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.6e-08
       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                  +l G g g+  +++ ++ ++   ++ rg  + l s+ + +G ++++ l   ++   g   Wr++  + a+++l +f+    +l+ ++++r+  ++ ++
  CDO71066.1  92 TMLVGTGNGFNSSSIPVYQSETCGGMIRGTLVCLNSTVTIIGLVIAYWLDYGMSYVSGpaqWRLPIGFQAVFALCLFL---QVLVLPDSPRWCMAHGRK 187
                 57899999********************************************9977679*****************99...455555555555555555 PP

       MFS_1 188 e...............................kgtgpaplvpawkallkdpvlw....illialllf...ffgfsglltllplylqevlgls...glll 245
                 e                               ++    + +  +++ll   +l     i+l++ + +   f+g +++ +l p+  q ++gl+   + l+
  CDO71066.1 188 EegvrilaqledrdsiddpvviekcreievslAQESAGGPF-RYRELLQGGPLGnirrICLCIGINVmqqFTGSNMINYLAPVVYQNTMGLTrnlS-LI 284
                 55588888888888888777777766665545333333333.4778888888855444333333333333666666*******77*******9876.66 PP

       MFS_1 246 aglllallalvgai 259
                 +g++ +++++++ +
  CDO71066.1 285 LGGFTSVTYMIASF 298
                 66677777777654 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 1.5e-10
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f....a....sslw.lllvl 91 
                 + ++  ++++++++ ++p  ++++ g++     +l ++ ++++++as++  + +drfGrr +l+++++++++++++++ +    +     + + +++++
  CDO71066.1 251 INVMQQFTGSNMINYLAPVVYQNTMGLTRNLSLILGGFTSVTYMIASFIPLWTVDRFGRRVLLMTSATGLSVCFIIASiLlsvgTksaaYGATaMVFIF 349
                 5677889999********999999**999998889999***********************************55555535554154455566699999 PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                  ++ G+g+   +p+   + a++++ + r+r+ ++ s ++ + + ++  +  +++a ++gWr vf+i+ai+ +l++ l+++++pe++
  CDO71066.1 350 QIFLGIGY---LPIPWLYPAEISTTRIRARGSAISSFFNWMCVfAVVEMTPPAIA-NIGWR-VFIIFAIFNALWVPLVYIFFPETK 430
                 99999995...99999999999999999999999999988888566667777777.*****.9***********99*999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.38s 00:00:01.12 Elapsed: 00:00:00.60
# Mc/sec: 2470.05
//
Query:       CDO71067.1  [L=358]
Description: hypothetical protein BN946_scf184844.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-19   67.5   0.3    9.7e-19   66.8   0.3    1.3  1  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
  ------ inclusion threshold ------
      0.027   14.8   0.7        0.3   11.5   0.0    2.2  2  CCDC-167        Coiled-coil domain-containing protein 167
       0.15   12.5   0.5        5.5    7.5   0.1    2.4  2  ANAPC15         Anaphase-promoting complex subunit 15
       0.31   11.1   1.1       0.72   10.0   1.1    1.7  1  zf-ACC          Acetyl-coA carboxylase zinc finger domain
       0.35   10.4   0.1       0.35   10.4   0.1    1.8  2  zf_C2H2_10      C2H2 type zinc-finger
       0.41   10.0   1.8       0.47    9.8   0.1    1.8  2  zf-RanBP        Zn-finger in Ran binding protein and others
       0.45    9.9   2.6        1.4    8.3   0.1    2.1  2  NMD3            NMD3 family
       0.83    9.4   4.9        3.1    7.6   4.9    1.9  1  A2L_zn_ribbon   A2L zinc ribbon domain


Domain annotation for each model (and alignments):
>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.3   4.3e-22   9.7e-19       1      54 []     221     277 ..     221     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 4.3e-22
  zinc_ribbon_10   1 wfDrvldvLvGdde...tsaknryalICskChshnGlapkeeleevkyrCpkCgaln 54 
                     w+D+++d ++Gdd+   + a +ryalIC+kC+ hnGl++++ +e+ +y+CpkCg +n
      CDO71067.1 221 WYDKLADAILGDDDstvSGAASRYALICQKCFAHNGLVKESMWEDAQYVCPKCGYFN 277
                     9*************9888899*********************************987 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013       0.3      37      83 ..      13      59 ..       7      60 .. 0.88
   2 ?    1.2   0.2      0.21   4.8e+02      54      66 ..     114     126 ..     109     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
    CCDC-167 37 ResleeEeaslkeqleenekeLksLrkeNrksmllsvalllvlaLvY 83
                 e+ e+E+a l +++++ +  L+++r   r+ +ll  +  +++ ++Y
  CDO71067.1 13 PEDYEQELARLAQDIQKRQTHLSEIRLRERRATLLFSVYAILSWIIY 59
                57889*********************999999999999899999988 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.21
    CCDC-167  54 nekeLksLrkeNr 66 
                 +ek L +Lrke r
  CDO71067.1 114 EEKALVKLRKEQR 126
                 6788888888876 PP

>> ANAPC15  Anaphase-promoting complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0024       5.5      16      43 ..       7      37 ..       4      46 .. 0.76
   2 ?    2.5   0.0     0.087     2e+02      23      48 ..     112     137 ..      97     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
     ANAPC15 16 wfnldrpcddEteLaqlEqehqe...wlqsI 43
                wf+ ++p d E+eLa+l q+ q+   +l++I
  CDO71067.1  7 WFSKSKPEDYEQELARLAQDIQKrqtHLSEI 37
                ***************9998766511155555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.087
     ANAPC15  23 cddEteLaqlEqehqewlqsIaekdn 48 
                   +E  L +l +e++ +++++++k n
  CDO71067.1 112 DAEEKALVKLRKEQRDKIEEVKQKTN 137
                 5799*******************987 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1   0.00032      0.72      11      26 .]     258     273 ..     248     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00032
      zf-ACC  11 lykkeLernlyVCPkC 26 
                 +    +e+  yVCPkC
  CDO71067.1 258 VKESMWEDAQYVCPKC 273
                 566668999******* PP

>> zf_C2H2_10  C2H2 type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       2.8   6.3e+03       5       9 ..     248     252 ..     247     253 .. 0.84
   2 ?   10.4   0.1   0.00016      0.35       3      13 ..     268     278 ..     266     284 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
  zf_C2H2_10   5 CPKCq 9  
                 C KC+
  CDO71067.1 248 CQKCF 252
                 99**7 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00016
  zf_C2H2_10   3 fsCPKCqeklP 13 
                 + CPKC++  P
  CDO71067.1 268 YVCPKCGYFNP 278
                 78******988 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.81   1.8e+03       7      14 ..     248     255 ..     247     257 .. 0.72
   2 ?    9.8   0.1   0.00021      0.47       7      18 ..     270     281 ..     269     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.81
                 -SSS--EE CS
    zf-RanBP   7 CskClvqN 14 
                 C kC ++N
  CDO71067.1 248 CQKCFAHN 255
                 88886666 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00021
                 -SSS--EEESSS CS
    zf-RanBP   7 CskClvqNfaws 18 
                 C+kC++ N++ +
  CDO71067.1 270 CPKCGYFNPSAR 281
                 *********987 PP

>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3     0.082   1.8e+02     144     168 ..     114     139 ..     108     149 .. 0.71
   2 ?    8.3   0.1   0.00062       1.4      13      48 ..     245     280 ..     232     293 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.082
        NMD3 144 yyeaivQvRqk.relteeehkrtfel 168
                 + +a+v++R++ r+  ee +++t  +
  CDO71067.1 114 EEKALVKLRKEqRDKIEEVKQKTNYY 139
                 679********877777777777655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00062
        NMD3  13 nglCedCllkevditegiekievevCkeCgrylpkg 48 
                   +C++C++++  + e   +    vC++Cg + p+ 
  CDO71067.1 245 ALICQKCFAHNGLVKESMWEDAQYVCPKCGYFNPSA 280
                 459****99998888888888899******999764 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.9    0.0014       3.1       6      31 ..     248     277 ..     246     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
  A2L_zn_ribbon   6 CsvC.ggngiln...seqgylvCieCgasf 31 
                    C +C  +ng++     e++ +vC++Cg+  
     CDO71067.1 248 CQKCfAHNGLVKesmWEDAQYVCPKCGYFN 277
                    666645777775555689*********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.59
# Mc/sec: 1839.61
//
Query:       CDO71068.1  [L=578]
Description: hypothetical protein BN946_scf184844.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.3  11.2      0.034   14.2   8.8    3.2  2  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
       0.61   10.2  12.9        1.1    9.4  12.9    1.3  1  DivIVA    DivIVA protein


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0018        16       4      99 ..     104     213 ..     102     228 .. 0.74
   2 !   14.2   8.8   3.8e-06     0.034       4     174 ..     245     428 ..     242     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0018
      Band_7   4 eegevgvvvrfGklsrvlepGlhfilP.............fgrsvtvvsvrvqtldvsv.........sltvptkDglpvtidvtviyrvpddapklva 80 
                 ++g++g++   G +s  ++pG +  +P                   + ++++  l  +v          ++ p +  ++v+  ++v y + + +  + +
  CDO71068.1 104 PPGQIGLINHGGLPSILTRPGRYPGMPlrnwwarkwvgtcG-----LSDTVIEFLGLTVvqvsqnqaaVVSDPQNHVFVVKNSGFVAYAI-EGTYNVLS 196
                 89******66999999*****9999**99998888444441.....55555555555554444433344455555558888899999999.99999999 PP

      Band_7  81 averesanldnlirrvles 99 
                  v  ++ +l+++ir  + +
  CDO71068.1 197 IV--DQTHLPTQIRDPVTK 213
                 99..999999999977665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.8e-06
      Band_7   4 eegevgvvvrfGklsrvlepGlhf.ilPfgrsvt.vvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvlesa 100
                 ++++ +++ + G+  + l++G h+   P + ++  ++ +   +++++   ++ t+D++pv +++++ +++ + + kl +     ++ + + +r +++s 
  CDO71068.1 245 PANNCAIL-QKGDDLELLPAGQHYiTSP-NVTLRgLFTLGENQIEMPT-KDIFTRDQVPVSLTIYLKWQL-TEPLKLTTHG---YNTPYDALRDKTQSI 336
                 55666666.5566666899999996666.5555569999999999999.99*******************.******9999...999999999999999 PP

      Band_7 101 lrevisemtleell.............sn.....reelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiara 174
                 l +++++++   ++             s+      ++l+ ++ ++l  ++ +yG+ + d+ + d ++  ++a+ + +  +   +aq+e+a+ 
  CDO71068.1 337 LTQIVAHLDYSSMVkqrslgpdnmddgSDassafLDALRTRAMDDLYLAAGEYGIIMKDLAVIDRQFKGDIASTMDKLTTRALQAQVEAANV 428
                 99999888887777554455554433311323333555555555555669999999999999999999999999999999999998887764 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.9   0.00012       1.1      33     113 ..     410     487 ..     401     498 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  33 dyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkia 113
                 ++ +l    ++l+++v++++ + ++ ++++++ + +l va   a+   ++a +ea  i++ A+++a++++ eae +ak  +
  CDO71068.1 410 TMDKLT--TRALQAQVEAANVDRENSNKIKQE-EGALAVARIKAQAQNTKADTEAYSIVAGAQAQAKRLQIEAEAQAKATR 487
                 555554..467999999999999999999999.99********************************99876666555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.54
# Mc/sec: 3249.70
//
Query:       CDO71069.1  [L=916]
Description: Glycosyltransferase Family 20 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-154  514.2   0.0   5.7e-154  513.3   0.0    1.4  1  Glyco_transf_20  Glycosyltransferase family 20
      1e-70  237.5   0.0    3.3e-70  235.9   0.0    1.8  2  Trehalose_PPase  Trehalose-phosphatase
  ------ inclusion threshold ------
      0.052   13.6   0.3       0.13   12.3   0.3    1.6  1  FAD-SLDH         Membrane bound FAD containing D-sorbitol deh


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.3   0.0  9.5e-158  5.7e-154      64     472 ..     187     591 ..      94     593 .. 0.94

  Alignments for each domain:
  == domain 1  score: 513.3 bits;  conditional E-value: 9.5e-158
                      HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHHHHCHHHHHTT-GG.....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHH CS
  Glyco_transf_20  64 kekvskeleekfsvvpvflsdekveeyyngfsksvLWpllHYklp.dsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllP 156
                      +++ ++e  +k+++vpv+l+d++++ +y+g++k++LWpl+HY l+ d  +e +  +++w+ Y  vn +FA +++e++++gdliw+hDYhL+l+P
       CDO71069.1 187 RSRDEPENGKKIHYVPVWLDDKDAHGHYDGYCKQTLWPLFHYLLWqDVATEYASADAHWAPYAAVNAAFARRVAEVYRPGDLIWIHDYHLLLVP 280
                      3344477778888*******************************98889999999*************************************** PP

                      HHHHHCCTTSEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HH CS
  Glyco_transf_20 157 ellRkkledakigfflHiPFPsseifriLpvreeilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidve 250
                      +llR+ l++a +g f+H+PFPsse+fr+Lp+r+eil+g+lga+li+F+t++y rhF s+c r+ g+ev+s   g++++g+ + ++++p+g+d +
       CDO71069.1 281 SLLRQSLPEAAVGLFVHTPFPSSEVFRCLPRRKEILDGMLGANLICFQTYSYSRHFTSSCVRVCGYEVTSGG-GIDVQGHVTAIGYCPVGVDAD 373
                      ***********************************************************************6.6******************** PP

                      HHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHH CS
  Glyco_transf_20 251 rlesalkkesvsekvkelkerfenkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINg 344
                      r+++   ++ ++ k+  l+  +e+k k+i+g+D+lD +kGv qkl+afe++L++yp+++g+vvl+q+++p+ +d +   +le++v+elv +INg
       CDO71069.1 374 RVAKDTLRPGIQPKLDALRALYEGK-KIIVGRDKLDVVKGVVQKLRAFEKLLQDYPQWIGNVVLIQVTSPALTDSP---KLERQVSELVAHING 463
                      **********************996.**************************************************...8************** PP

                      HH-BTTB-SEEEEES---HHHHHHHHHH-SEEEE--SSBSS-CHHHHHHHCSTT.T--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHH CS
  Glyco_transf_20 345 efgtldytPvvylersldfeeliallaaadvllvtslRdGmnlvakeyvvcqqe.kkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikea 437
                      e+g+ld+ Pv+++++ ++++e++all++ad+ ++t+lRdGmn+++ e+v+ q+  kk++LiLSeF+G ++ +++ a+ +NPw+++eva+a++++
       CDO71069.1 464 EYGSLDFIPVHHYHQTIKKDEFYALLSVADLGVITPLRDGMNTTSMEFVISQERtKKSPLILSEFMGISSTMTE-ALQINPWNMSEVAAAMHRG 556
                      ***************************************************988799****************7.5****************** PP

                      HC--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH CS
  Glyco_transf_20 438 LkmseeerkkrekkllkqvskhdvqsWaesflsel 472
                      L+mseee+ +r+++l+k v++h++q Wa  + ++l
       CDO71069.1 557 LTMSEEEKVRRHQQLYKTVTTHTSQTWAAMLAKKL 591
                      ****************************9988876 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.39   2.3e+03     147     176 ..     399     428 ..     384     437 .. 0.77
   2 !  235.9   0.0   5.5e-74   3.3e-70       1     204 [.     625     827 ..     625     840 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.39
                      EEEE-SSEEEEE-S---HHHHHHHHHHTS- CS
  Trehalose_PPase 147 evtqgkkvvevrpqgvsKGkaverlleslg 176
                      ++ +g++ + v   +v K+ a e+ll++++
       CDO71069.1 399 KIIVGRDKLDVVKGVVQKLRAFEKLLQDYP 428
                      455677777777778889999999999887 PP

  == domain 2  score: 235.9 bits;  conditional E-value: 5.5e-74
                      EEETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHH.HHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHH CS
  Trehalose_PPase   1 flDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslke.eellvkvpelglaaeHGaeirspsgedwenqaevedlewlkevk 93 
                      ++DydGTl piv+ p aavps+e+l++L++L++dpknvv+i+SGr+ ++ e+ l+ +++lg++aeHG +ir p++++w n +e++d++w++ev 
       CDO71069.1 625 LFDYDGTLAPIVKVPSAAVPSKETLQALEALTADPKNVVYIISGRDGEFlEQHLGHIKNLGMSAEHGGFIREPGESTWRNFTESLDMSWMSEVL 718
                      69******************************************************************************************** PP

                      HHHHHHHTTSTT-EEEEETTEEEEE-TT--TT....THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS--------EE CS
  Trehalose_PPase  94 eileektertpGsyiEekkfalsvHyrnadde..elqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsadseddfv 185
                      ei++++tert+Gs+iE kk+++++Hyr ad+e   +q  ++++ le+ l +k+++ev +gkk++evrp  v+KG++v+r+l +++ a    +f+
       CDO71069.1 719 EIFKYYTERTTGSHIEVKKSSITWHYRSADPEwgLFQCHQCQDLLENNLARKRPIEVLVGKKNLEVRPLAVNKGEIVKRILYFNPDA----EFI 808
                      *************************************************************************************87....*** PP

                      EEEE-SSTTHHHHTTS-TT CS
  Trehalose_PPase 186 lciGDdrtDedmFsvlrkt 204
                      +c+GDd+tDedmF++l   
       CDO71069.1 809 FCAGDDKTDEDMFRALLLF 827
                      **************98655 PP

>> FAD-SLDH  Membrane bound FAD containing D-sorbitol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.1e-05      0.13      25      97 ..     513     589 ..     497     603 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
    FAD-SLDH  25 aaaaaaaassaelaqFlqvSqlLtgrkkLdp....algarlyaalvaedaefkaqlaaLaallekqkakdveallaa 97 
                  +++ + +s+  l++F+ +S+++t++ +++p    +++a++++ l+ +++e  ++ ++L + +++++ ++  a+la+
  CDO71069.1 513 ISQERTKKSPLILSEFMGISSTMTEALQINPwnmsEVAAAMHRGLTMSEEEKVRRHQQLYKTVTTHTSQTWAAMLAK 589
                 5677888889999****************97555589**************************99998888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5756.39
//
Query:       CDO71070.1  [L=525]
Description: hypothetical protein BN946_scf184844.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-50  166.8   0.0    1.7e-15   56.6   0.0    3.2  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00047   20.2   0.0       0.43   10.7   0.0    3.5  3  Limkain-b1    Limkain b1
    0.00048   19.5   0.0     0.0034   16.8   0.0    2.2  2  DUF3343       Protein of unknown function (DUF3343)
  ------ inclusion threshold ------
      0.026   14.9   0.0       0.46   11.0   0.0    2.4  2  Phage_TAC_13  Phage tail assembly chaperone, TAC


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.7e-18   1.2e-14       1      68 [.     124     191 ..     124     192 .. 0.97
   2 !   56.6   0.0   3.7e-19   1.7e-15       1      69 [.     245     313 ..     245     314 .. 0.98
   3 !   52.8   0.0   5.6e-18   2.5e-14       1      69 [.     407     474 ..     407     475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.7e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 ++VgnL++dv  ++L e++++ G++  +++  + tg skg+++Ve++++edA++A+++l ++ l gr+
  CDO71070.1 124 VYVGNLSYDVRYRDLMEFMRGAGEVLFAEVLVTPTGVSKGCGIVEYANPEDAQRAIRELSEQLLLGRP 191
                 8*************************************************************999987 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 3.7e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+VgnLp+ + +++Lk+lF+  G i ++++    +g++kg + V Fe+  dA++A++ +ng    gr+l
  CDO71070.1 245 LYVGNLPYQAGWQDLKDLFRSAGNIIRADINFGLDGRPKGSGTVIFETAKDAQQAISMYNGFDWYGRRL 313
                 8*************************************************************9999987 PP

  == domain 3  score: 52.8 bits;  conditional E-value: 5.6e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V+nLp+++ +e+L elF+  G+++ +++ + e  +skg++ V+F++  +Ae A+++++++++ggr+l
  CDO71070.1 407 IMVRNLPWSTANEDLVELFETTGQVELAEILY-EGTRSKGCGVVQFAQVQEAETAIAKFQNYMYGGRPL 474
                 79******************************.7********************************986 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   9.6e-05      0.43      38      78 ..     159     199 ..     148     204 .. 0.89
   2 ?    4.0   0.0     0.011        51      42      76 ..     284     318 ..     278     323 .. 0.90
   3 ?    0.4   0.0      0.16     7e+02       7      63 ..     409     466 ..     404     473 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.6e-05
  Limkain-b1  38 sisgksavlrfanqeaaeralkrleneDvfGnritvsekpr 78 
                 ++s++  ++ +an+e a+ra++ l +    G  + ++e  +
  CDO71070.1 159 GVSKGCGIVEYANPEDAQRAIRELSEQLLLGRPVFIREDRE 199
                 79999********************9999999999998744 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
  Limkain-b1  42 ksavlrfanqeaaeralkrleneDvfGnritvsek 76 
                 +s  + f+    a++a+   ++ D +G r+ v+e 
  CDO71070.1 284 GSGTVIFETAKDAQQAISMYNGFDWYGRRLEVRED 318
                 577899999**********************9986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.16
  Limkain-b1   7 vsnLPtnrdklkkaiknrLrrLsdncGG.kvlsi......sgksavlrfanqeaaeralkrlen 63 
                 v+nLP +        ++ L  L++ +G     +i      s++  v++fa+ + ae a+ +++n
  CDO71070.1 409 VRNLPWSTA------NEDLVELFETTGQvELAEIlyegtrSKGCGVVQFAQVQEAETAIAKFQN 466
                 566665544......4455555555543112222221222455667778777777777776665 PP

>> DUF3343  Protein of unknown function (DUF3343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.5e-07    0.0034      26      60 ..     151     185 ..     139     190 .. 0.91
   2 ?   -0.8   0.0      0.25   1.1e+03      36      53 ..     443     460 ..     442     467 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.5e-07
     DUF3343  26 arliplPreisagCGlalrvneedieeasrllsea 60 
                 a++  +P  +s+gCG++   n+ed ++a r lse+
  CDO71070.1 151 AEVLVTPTGVSKGCGIVEYANPEDAQRAIRELSEQ 185
                 77888****************************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
     DUF3343  36 sagCGlalrvneedieea 53 
                 s+gCG++   + ++ e a
  CDO71070.1 443 SKGCGVVQFAQVQEAETA 460
                 789**9988766555554 PP

>> Phage_TAC_13  Phage tail assembly chaperone, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.46       6      50 ..     100     142 ..      98     154 .. 0.87
   2 ?    0.9   0.0      0.14   6.5e+02      29      50 ..     404     425 ..     399     463 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
  Phage_TAC_13   6 aglfvgkpvekeikwkqgegeeltatvyvrklsfktaeadlkalk 50 
                    g+ +++p+e  +++ +  +++ +  vyv  ls+++  +dl+++ 
    CDO71070.1 100 LGGPINAPHEEAVEFAK--QSKRENRVYVGNLSYDVRYRDLMEFM 142
                   578899**********9..4799*************999998765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
  Phage_TAC_13  29 tatvyvrklsfktaeadlkalk 50 
                    +++ vr l+++ta++dl +l 
    CDO71070.1 404 SQQIMVRNLPWSTANEDLVELF 425
                   6899**********99876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.40s 00:00:01.20 Elapsed: 00:00:00.58
# Mc/sec: 2739.51
//
Query:       CDO71071.1  [L=239]
Description: hypothetical protein BN946_scf184844.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.6   0.2     0.0047   16.4   0.0    1.9  2  Rax2        Cortical protein marker for cell polarity
     0.0042   16.5   7.2     0.0042   16.5   7.2    1.9  2  SKG6        Transmembrane alpha-helix domain
     0.0096   14.8   3.1      0.015   14.2   3.1    1.2  1  VSP         Giardia variant-specific surface protein
  ------ inclusion threshold ------
      0.094   12.7   0.3        1.2    9.1   0.1    2.1  2  DUF3290     Protein of unknown function (DUF3290)
      0.098   13.6   0.3       0.21   12.5   0.3    1.5  1  EphA2_TM    Ephrin type-A receptor 2 transmembrane domain
       0.19   10.5   0.1       0.26   10.1   0.1    1.1  1  Amnionless  Amnionless


Domain annotation for each model (and alignments):
>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       0.2   5.9e+02       9      49 ..      40      78 ..      15      90 .. 0.70
   2 !   16.4   0.0   1.6e-06    0.0047     130     203 ..     150     217 ..     138     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
        Rax2  9 qevsslsganelpgpvtsftladsdisqlwvagkss.ngssf 49
                q + + s+a+ +pg+  +ft++++ i+ +   g    ngs+ 
  CDO71071.1 40 QDYRNTSHASRSPGSTVKFTFNGTYITVY---GSVDsNGSTS 78
                55556666677777777777777765444...4444456554 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.6e-06
        Rax2 130 nnekgsissifleksnsfssssdlkkkkkklsrgfVVlIgLAlALgtvallgllgiilayirkkregyepakpr 203
                 +++++s ss  +++s   +s  + ++++k ls+g++V+I+   A+ ++a++  l+ +  +        ++ ++r
  CDO71071.1 150 SSSPSSSSSSSSSDSAPVAS--SASSQGKGLSNGAIVGIAVVAAVVVIAVVAALFYVRRR----PARKVRHQSR 217
                 45677777777778888885..4559**************98887777776655544444....4444443333 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.0       2.5   7.4e+03       2       8 ..     157     163 ..     154     168 .. 0.51
   2 !   16.5   7.2   1.4e-06    0.0042       4      37 ..     176     207 ..     173     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
        SKG6   2 sdssnsn 8  
                 s+ss+s 
  CDO71071.1 157 SSSSSSD 163
                 4444444 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.4e-06
        SKG6   4 ssnsntvaIavaVaVPVaViiivLlailifvrRR 37 
                 +++sn++ +++aV+  V+V i+v++a+++ vrRR
  CDO71071.1 176 KGLSNGAIVGIAVVAAVVV-IAVVAALFY-VRRR 207
                 789**********987655.467788888.9999 PP

>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   3.1     5e-06     0.015     348     387 ..     162     201 ..     144     205 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5e-06
         VSP 348 vlcylikdsgstnksGlstGaiaGisvavvvvvgGlvGfl 387
                      +  s s+   Gls Gai Gi+v + vvv  +v  l
  CDO71071.1 162 SDSAPVASSASSQGKGLSNGAIVGIAVVAAVVVIAVVAAL 201
                 233334555788899***********98888877777655 PP

>> DUF3290  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.088   2.6e+02     120     142 ..      70      92 ..      36      94 .. 0.74
   2 ?    9.1   0.1    0.0004       1.2      16      47 ..     182     213 ..     176     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.088
     DUF3290 120 rvtlnsdnnsYtlekvhlinski 142
                  v+ n   +sYtl+ +  +++++
  CDO71071.1  70 SVDSNGSTSSYTLDDTSPVSKEV 92 
                 577788888******99999887 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0004
     DUF3290  16 dllryililvlllllivvlilylrnrldtkyR 47 
                  ++ ++++ +++++ +v++++y+r+r   k+R
  CDO71071.1 182 AIVGIAVVAAVVVIAVVAALFYVRRRPARKVR 213
                 57889999999****************99998 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   6.9e-05      0.21       1      34 [.     183     216 ..     183     235 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqks 34 
                 i+++av+++v+++++v+  ++++rr +++ +++s
  CDO71071.1 183 IVGIAVVAAVVVIAVVAALFYVRRRPARKVRHQS 216
                 6778888888888877777776655555544444 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   8.6e-05      0.26     336     387 ..     164     219 ..     149     235 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.6e-05
  Amnionless 336 dssaag.apgesaglvlgivfgl...vlllllllillllllrrkgvlrlpqllksp 387
                 +  +a  a+++  gl  g ++g+   + +++++++++l+++rr++  ++++  + p
  CDO71071.1 164 SAPVASsASSQGKGLSNGAIVGIavvAAVVVIAVVAALFYVRRRPARKVRHQSRVP 219
                 22222234444445555555555221235556666667777777764555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      828  (0.0461822); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 1371.09
//
Query:       CDO71072.1  [L=428]
Description: hypothetical protein BN946_scf184844.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-55  189.0   5.9    1.7e-55  188.4   5.9    1.2  1  MFS_5       Sugar-tranasporters, 12 TM
    8.9e-18   64.3  27.4    8.9e-18   64.3  27.4    2.0  2  MFS_1       Major Facilitator Superfamily
    2.4e-05   23.4   0.0    0.00014   20.8   0.0    2.2  1  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
       0.48   10.3  11.5       0.15   12.0   1.0    3.2  3  DUF981      Protein of unknown function (DUF981)
        2.6    8.1   4.5         21    5.2   0.9    3.1  3  DUF4083     Domain of unknown function (DUF4083)


Domain annotation for each model (and alignments):
>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   5.9   4.6e-59   1.7e-55      52     298 ..      28     279 ..      11     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 4.6e-59
       MFS_5  52 lqgpyvyalye.sygldkgdieilfiagfgssllfgtivgsladkfgrkracltyailyilacitkhsgeykvlmigrvlggiatsllysafeswlvae 149
                 l gpy+y +y  ++gl+   +  lf+ gf ++ +    vg  ad +grk+ c++++ +y+lac+    + +++l++gr+lgg +t++l+s feswl+  
  CDO71072.1  28 LWGPYIYSVYRtQHGLSERWVALLFVLGFLTAGISAPAVGVWADEYGRKKMCMIFCSSYALACVIIQIPSLPLLFLGRLLGGFSTAILFSCFESWLISS 126
                 67********6489************************************************************************************* PP

       MFS_5 150 hnkrgfddsllsivfskaiflgnslvaiiaglaanllaerlgfgpvapfdlalsvlligaviilsswsenygdts.ekkdl..kesfkkaakaiaedek 245
                  n   ++ + ls+++  a  l ns+ a +ag+++n l er      +pf ++  +l++ + +i  sw en+g +    +++  ++++ ka  a++ d +
  CDO71072.1 127 ANFLSLSSRDLSTILGYAS-LVNSVTATVAGMVSNELVERSAR-YSSPFIASGVLLVLDLLVIWRSWEENFGGSRtSVQEVldMSRLSKAWTAVTTDTR 223
                 ******************9.9**************99999876.799************************97431233441235688999******** PP

       MFS_5 246 vallglvqslfegsmytfvllwtpals...andeeiphgyifaafmlasmlgssva 298
                 +++lgl+q+ fegsmy fv+lw p l    ++ + +p gyif++fml+  lg+ ++
  CDO71072.1 224 LFVLGLIQTCFEGSMYIFVFLWVPFLQeaaSSRQPLPLGYIFSSFMLSMTLGALLY 279
                 **************************8764566789***************98766 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3  27.4   2.5e-21   8.9e-18       9     342 ..      23     371 ..      20     377 .. 0.78
   2 !   11.4   4.4   3.2e-05      0.11      73     178 ..     314     419 ..     303     426 .. 0.69

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.5e-21
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpaga 107
                 +++ s+ gp + + + +++g+s+  + ll++l +l+a+++++ +G+++d +Gr+++ ++   ++al+++++ + +sl+ll+++r+l G+ +++lf+   
  CDO71072.1  23 GFMVSLWGPYIYSVYRTQHGLSERWVALLFVLGFLTAGISAPAVGVWADEYGRKKMCMIFCSSYALACVIIQI-PSLPLLFLGRLLGGFSTAILFSCFE 120
                 55666666667667788999***********************************888888888888677776.9999******************998 PP

       MFS_1 108 aliadwfpk.e....ergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 +++   ++  +    + +  +g++s+ +s+ a ++ +++  l+  s+ ++++f++ +++++l ++ +++  +ee+   +r s +e       + l++aw
  CDO71072.1 121 SWLISSANFlSlssrDLSTILGYASLVNSVTATVAGMVSNELVeRSARYSSPFIASGVLLVLDLL-VIWRSWEENFGGSRTSVQEV---LDMSRLSKAW 215
                 888877654332333888888888888888888888888888866666**************966.66888999999999999998...377777779* PP

       MFS_1 201 kallkdpvlwillialllf...ffgfsglltllplylqevlgls.....glllaglllallalvgail..allagrlsdrlgr.......rrrlllall 282
                 +a+ +d  l+  +++l+ +   + ++ +++ ++p++ qe          g++ ++  ++l++ +ga l  ++++ + +  +g+        ++l   l+
  CDO71072.1 216 TAVTTDTRLF--VLGLIQTcfeGSMYIFVFLWVPFL-QEAASSRqplplGYIFSS--FMLSMTLGALLytCIISLWHAEPFGSgtsdsdgITTLHAKLS 309
                 *******994..444444411133555599999994.777777798888777777..555555555555588888888888889999998777777777 PP

       MFS_1 283 llllaalglallavtssavllll..vlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                  +++++ +la++   ss + +    ++  +  ++g+++p   ++  +l+p e+++t+s+lf 
  CDO71072.1 310 TVICIVSALAFTVSVSSGSEHRRfwAFCAFEACVGMYYPVQGTMRGKLVPDEHRATLSSLFR 371
                 77777777777777744444444116666888***************************986 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.2e-05
       MFS_1  73 alglllllfa..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlf 168
                 ++++l+++++  s++    +++ +   ++ g+++p+ +++  +++p+e+r+   +l+ +  ++ +++  + g + a ++  +a+ ++l + +l+ +v  
  CDO71072.1 314 IVSALAFTVSvsSGSEhRRFWAFCAFEACVGMYYPVQGTMRGKLVPDEHRATLSSLFRVPLNAFVVVSLMTGVASARHFVLSACAILLMLTALVTAV-- 410
                 222122221123333322455666667788999**************************99999998877777777777788888888888888877.. PP

       MFS_1 169 llllpeeppe 178
                   +l++++ +
  CDO71072.1 411 -TFLRRTRGP 419
                 .565555443 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     4e-08   0.00014      16      86 ..      27      96 ..      21     289 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4e-08
  MFS_1_like 16 gsllPYl.tiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfip 86
                +   PY+ ++y ++ gl+ + ++++ ++  lt+ +s+p +gv aD +g++k  +i+++  ++++++  + ip
  CDO71072.1 27 SLWGPYIySVYRTQHGLSERWVALLFVLGFLTAGISAPAVGVWADEYGRKKMCMIFCSSYALACVI--IQIP 96
                5566998689**********************************************9988887776..3355 PP

>> DUF981  Protein of unknown function (DUF981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.024        86      20      84 ..      28      93 ..      19     117 .. 0.71
   2 ?   -0.1   0.1      0.21   7.5e+02      22      54 ..     150     182 ..     135     192 .. 0.64
   3 ?   12.0   1.0   4.2e-05      0.15      20     113 ..     314     410 ..     298     414 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.024
      DUF981 20 llayyvlkaleerekkeankalaapflivGllalitGlhmtltWPl...pgsYnilfgdpallfGvll 84
                l   y++ ++  r +   +++++a+++++G+l +  ++ +  +W       +  ++f   ++l  v++
  CDO71072.1 28 LWGPYIYSVY--RTQHGLSERWVALLFVLGFLTAGISAPAVGVWADeygRKKMCMIFCSSYALACVII 93
                4555777777..99999999999999999999887777777777444332245567777777766666 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
      DUF981  22 ayyvlkaleerekkeankalaapflivGllali 54 
                 + ++++ + ++e  e++++++ pf++ G+l+++
  CDO71072.1 150 VTATVAGMVSNELVERSARYSSPFIASGVLLVL 182
                 333333334677788889999999999999875 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.2e-05
      DUF981  20 llayyvlkaleerekkeankalaapf..livGllalitGlhmtltWPl..pgsYnilfgdpallfGvllllaavalykkaklkalgilalflGliliv 113
                 ++ ++++ + +++  +e+++ +a+ +  + vG++  + G       P    +    lf  p+  f v++l+++va +++  l+a +il+++  l++ v
  CDO71072.1 314 IVSALAFTV-SVSSGSEHRRFWAFCAfeACVGMYYPVQGTMRGKLVPDehRATLSSLFRVPLNAFVVVSLMTGVASARHFVLSACAILLMLTALVTAV 410
                 222222222.3566666666666554126899999999999998888744445667**********************************99999876 PP

>> DUF4083  Domain of unknown function (DUF4083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.042   1.5e+02       2      11 ..     274     283 ..     273     286 .. 0.89
   2 ?   -3.1   0.0       2.3   8.2e+03      42      51 ..     303     312 ..     302     318 .. 0.81
   3 ?    5.2   0.9    0.0058        21       8      28 ..     396     415 ..     392     418 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.042
     DUF4083   2 lgdliyliiv 11 
                 lg+l+y++i+
  CDO71072.1 274 LGALLYTCII 283
                 8********9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
     DUF4083  42 eleqKLDkiI 51 
                  l++KL  +I
  CDO71072.1 303 TLHAKLSTVI 312
                 5899998888 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0058
     DUF4083   8 liivivLilllvfsftlfiRr 28 
                  +++++++ +lv ++t+ +Rr
  CDO71072.1 396 ACAILLMLTALVTAVTF-LRR 415
                 79************996.565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2612.09
//
Query:       CDO71073.1  [L=597]
Description: hypothetical protein BN946_scf184844.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-56  192.2   0.0    1.6e-56  191.6   0.0    1.3  1  Sec23_trunk    Sec23/Sec24 trunk domain
    1.8e-26   92.7   0.0    3.8e-26   91.7   0.0    1.6  1  Sec23_BS       Sec23/Sec24 beta-sandwich domain
    3.2e-26   91.2   0.2    6.3e-26   90.2   0.2    1.5  1  Sec23_helical  Sec23/Sec24 helical domain
    1.1e-15   57.3   0.0    3.1e-15   55.8   0.0    1.8  1  Gelsolin       Gelsolin repeat


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   3.6e-60   1.6e-56      53     243 .]       2     220 ..       1     220 [. 0.98

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 3.6e-60
                  EEEEETSTTS.......SSSEEEEECHTTSCC...................SSTSSSSSEETTTTHHHHHHHHHHHHH.HSTT-TTC-----HHHHHH CS
  Sec23_trunk  53 vhffelksel.......rqpkelvvsdlqdvf...................lpladrlLvplseseavledlLeelpe.mfavtagkrperalgpalk 123
                   +++el++ +       r+ ke++ +++qd++                   +  a+r+L+p++++e++l+ +Le l++ +++v+++krp r++g+a++
   CDO71073.1   2 TQVHELGYAEcsksyvfRGGKEYAPKQIQDMLglspqnraaprpgqpmppqTFGASRFLMPVQQCEFQLTGILEALSRdPWPVANDKRPLRCTGVAVS 99 
                  699*****999************************************98877777******************************************* PP

                  HHHHHHCHCT..S-EEEEEEESS---SSTTTSS-SBTTS...CCTSSTTCHHCHSCSSSCHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHTT CS
  Sec23_trunk 124 aavellkave..tggkiivfvgslptvgaggklksrede...slldidkekaklvkkadkfYkkLakecvkqgisvDlFlfsldyvdlaelkqlaelt 216
                  +av+ll++++  tg++i++f+g+++t g+g++++++++e   s++did+++ak++k a kfY+ Lak+++++g+++DlF+++ld+v+l+e+k+++++t
   CDO71073.1 100 VAVGLLETTFpnTGARIMLFAGGPATEGPGMVVSNELKEpirSHHDIDRDSAKHFKRASKFYEGLAKRASTNGHVIDLFAGCLDQVGLLEMKSMPNST 197
                  *********9****************************99********************************************************** PP

                  T-EEEEETTTCCHHHHHHHHHHHHHHH CS
  Sec23_trunk 217 gGqvvlydsFsaekdasklkqdlkrvv 243
                   G++vl+d F     +s++kq++ r++
   CDO71073.1 198 NGVIVLSDAFA----TSIFKQSFLRMF 220
                  ***********....********9986 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   8.4e-30   3.8e-26       1      95 [.     231     333 ..     231     334 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 8.4e-30
                 EEEEEEEEEE-TTEEEEEEESSSEEC....STBESSEESECSESEEEEEEEETT--EEEEEEE....SSBTCTTSEEEEEEEEEEEETTSEEEEEEEEE CS
    Sec23_BS   1 gfnatlevrtSkelkvsgliGncvsl....snvsekeiGeggtsewklcsldpdstlavyfdi....deklksgkqayiQfatlYthssgerrlRVttv 91 
                 gfnat++v+t+kelkvsg+iG+ +s     ++v e+eiG+g+ts+w++ ++ p ++ +vyf++     ++l+ g++ +iQf+t+Y+hssg+++lRVtt+
  CDO71073.1 231 GFNATFDVQTTKELKVSGMIGHGISAgkksPCVGETEIGIGQTSAWRINAVVPRTAAGVYFEVvtpaGQPLQPGSRGLIQFVTHYQHSSGKQKLRVTTI 329
                 79************************999889*******************************9999559***************************** PP

                 EEEE CS
    Sec23_BS  92 alpv 95 
                 a+++
  CDO71073.1 330 ARNF 333
                 *987 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.2   1.4e-29   6.3e-26       1     102 [.     346     444 ..     346     445 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.4e-29
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHHHHTSTTTS-.-TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 DqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyilallKspafrg.gnsvpaDervfalsllls 95 
                    Dqea++vl+a+ a+ ka+  +  d+ ++ld+ l++l++++ ++ ++  +ps+++l ++++ +P+++++l++s+ f++ +n++p De++f+++ l+ 
     CDO71073.1 346 DQEAAAVLMARIAVFKAEIDDSPDVLRWLDRMLIRLCQKFADYRKE--DPSSFRLTDNFSIYPQFMFHLRRSQ-FLQvFNNSP-DETAFYRHVLNE 437
                    9*****************99************************98..*************************.8888*****.************ PP

                    --HHHHH CS
  Sec23_helical  96 lpvdqll 102
                    ++v+++l
     CDO71073.1 438 EDVNNSL 444
                    ****997 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0     7e-19   3.1e-15       4      76 .]     459     546 ..     457     546 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 7e-19
                 EEEEBSSSGGGEETTSEEEEEESS........EEEEEEHTT..SHHHHHHHHHHHHHHHH.....HCTTTTTSEEEEEETTHHHHHHH CS
    Gelsolin   4 lpkvvklsssslesgdcyLLdngf........tiflWiGke..ssqeeknfaadlaaeld.....seerfplpeliredqgkeparFl 76 
                  p++v+l+s s++++ ++LLd++f        ti++W++++  +++ ++nf+ +l+a+++       +rfp p++i++dqg+++arFl
  CDO71073.1 459 PPQPVLLDSVSIKPDVILLLDTFFhilifhgeTIAQWRKAGyqDQEGYENFKELLEAPVRdaqdlLADRFPIPRYIVCDQGGSQARFL 546
                 499***************************************9999*******************999*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3846.50
//
Query:       CDO71074.1  [L=382]
Description: hypothetical protein BN946_scf184844.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-08   32.8  22.9    2.5e-06   26.6  20.0    2.1  2  MFS_1           Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  20.0   1.4e-10   2.5e-06     109     353 .]      12     297 ..       9     297 .. 0.69
   2 !   18.3   3.3   4.9e-08   0.00087      96     195 ..     256     350 ..     255     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.4e-10
       MFS_1 109 liadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafv..lfllllpeepperkrkspkeee............... 188
                 +iad+++   +  g+a  +++ ++  G+ ++ l+g ++a++ +  +++y +    ll+       l++++++ +   ++ ++++               
  CDO71074.1  12 MIADLYSNdlPALGLASTVFAFCTLSGPCFATLVGFFIAAHTSHGYAYYRVSSPVLLSTKypAHRLWVLRTYGPAVLEKRAKKLrksgktnawaahelh 110
                 566666664458899999999999999999999999999999988888888888888855456667777777777777777777777777777774444 PP

       MFS_1 189 .....kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdr....... 270
                      +    + ++ +++++   p +  +++++ ++ + ++++++   p+ + ++++++    g + ++  ++l+++++++ +  + +l  +       
  CDO71074.1 111 hksisELLRAHVIR-PFTMIIYEPIIQgAAVWVTITYG-ILYFFFEVYPIVFITQHNIPfqlcGIFFLS--ISLGMIISIGTFKPLLALTEKvrlplie 205
                 44442222222222.46666666644244555555554.444466666666799999996666555555..5555555555566666667777788888 PP

       MFS_1 271 ......lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                         +++ l + ll+++++ ++l+++a+ts +  ++++ +l    +Gfg   vf s+++++s+ + + +a +a++++++++s+++a++p
  CDO71074.1 206 pkgkalAMPETHLKIVLLGCFCLPISLFWFAWTSGPETHWIAPALagipFGFGTTAVFFSFASYMSSTY-TLYASSAVAANTLFRSIVAAIFP 297
                 7777765559***********************666666665555445566655556888888888888.488889999999********998 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 4.9e-08
       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 G+g+ a+f + a++++  ++    ++a++  +++ s+ a++ p+++  +++ lg ++   ++a++sl ++ + +++++  ++ r+r+++++e    ++a
  CDO71074.1 256 GFGTTAVFFSFASYMSSTYTL-YASSAVAANTLFRSIVAAIFPIIAHSVTDRLGTQWGVTVFAFISLGMVPIPFIFVRYGETLRARSRHAKE----AQA 349
                 999999999999999999999.***********************************************88888888888888888888888....444 PP

       MFS_1 195 p 195
                  
  CDO71074.1 350 L 350
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2594.74
//
Query:       CDO71075.1  [L=218]
Description: hypothetical protein BN946_scf184844.g79, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-07   29.1   1.7    4.5e-07   29.1   1.7    1.7  2  MFS_1     Major Facilitator Superfamily
     0.0018   16.9   1.1     0.0018   16.9   1.1    1.6  2  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.058   12.6   2.4        0.1   11.8   1.1    1.7  2  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.7   7.5e-11   4.5e-07       2     100 ..      54     150 ..      53     165 .. 0.82
   2 ?   -1.5   0.3      0.15   8.9e+02     248     266 ..     191     209 ..     177     216 .. 0.50

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 7.5e-11
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++ af++ +++++++p     + e +g+++++ ++ lt+y lg++ +++++++l++ +Gr+  + ++ +l++++++l +f+ ++ ++l++ + ++l +g
  CDO71075.1  54 CIYAFCAVFGSAVYAPGEE-KIRERFGVNADVSSTGLTMYVLGFG-FAPLISPLTEHLGRKLPYYFSWVLLVVSSALSAFIENIVVVLLCAAACALNTG 150
                 6789**************9.*********************9776.67999***********************6666676885555555555554443 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
       MFS_1 248 lllallalvgailallagr 266
                 +++a++al g ++a l+g+
  CDO71075.1 191 TMFAFCALSGPCFATLFGF 209
                 3333333333333333332 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.1     3e-07    0.0018     260     327 ..      83     148 ..      46     157 .. 0.86
   2 ?   -3.8   0.4      0.58   3.5e+03     316     332 ..     191     207 ..     182     214 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3e-07
       MFS_2 260 aasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfg 327
                 ++s   l+++++++ ++pl++pl+ +lg+k  y+++ +l++v ++l  ++  +n++++l+++++  + 
  CDO71075.1  83 DVSSTGLTMYVLGFGFAPLISPLTEHLGRKLPYYFSWVLLVVSSALSAFI--ENIVVVLLCAAACALN 148
                 45555667799999************************************..8888888888776554 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.58
       MFS_2 316 lflvllviagfgvgvaa 332
                 +++++++++g ++++++
  CDO71075.1 191 TMFAFCALSGPCFATLF 207
                 44444444444444433 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.18     1e+03     110     129 ..      46      65 ..      41      70 .. 0.70
   2 ?   11.8   1.1   1.7e-05       0.1     223     279 ..      90     146 ..      84     160 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.18
                 xxxxxxxxxxxxxxxxxxxx RF
      CitMHS 110 kklppllliplalaanigga 129
                 k++ ++l++++a++a  g+a
  CDO71075.1  46 KQITVALVCIYAFCAVFGSA 65 
                 55666677888888887775 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 223 fllvgaleqtGilealadllgaggplvalalvlgliallsafisnvavaalmapial 279
                 ++ v +++   ++  l + lg   p+   +++l+++++lsafi n+ v++l a++++
  CDO71075.1  90 TMYVLGFGFAPLISPLTEHLGRKLPYYFSWVLLVVSSALSAFIENIVVVLLCAAACA 146
                 444444444445555566664422222225668888889999999988766666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1522.18
//
Query:       CDO71076.1  [L=1005]
Description: hypothetical protein BN946_scf184844.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-124  413.4   0.0   8.7e-124  413.0   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.0   0.0  4.8e-128  8.7e-124       1     324 []     211     526 ..     211     526 .. 0.95

  Alignments for each domain:
  == domain 1  score: 413.0 bits;  conditional E-value: 4.8e-128
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 ++na+eL+k+iD+ lpsg+p++k++ev v+ge            +e+++rd+le+i++l+++p+fa++l ++Per+ytde++++rv+ +m+tgdw+w++
  CDO71076.1 211 YTNAAELNKIIDDhLPSGRPRFKRREVVVQGEA-----------FEVYYRDVLECIRALFSDPEFANDLLLVPERHYTDESRQTRVFFDMHTGDWWWRI 298
                 89**********99*****************87...........**********************************99888**************** PP

     Plavaka  99 qieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkea 197
                 qi ++ + g t++pvi+ssDKT+l+vf gnk+ayPvYl+iGn+pk+vrrk+s++++vllayLp+++l++i++++++r+ +  +lfHac+++il+pLk+a
  CDO71076.1 299 QILDRRSPGGTVIPVIISSDKTQLTVF-GNKTAYPVYLTIGNLPKDVRRKPSHRGQVLLAYLPTSNLEHIANKASQRR-TLLNLFHACMRHILAPLKAA 395
                 *6544444*******************.******************************************87777776.******************** PP

     Plavaka 198 gkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl..eeselrtreetlelleeaade...lkklwkeyglkgviepFw 291
                 g++gv m+ +dg + r++pilaayi+DypEq+lvac+++g+Cpkc ++++elg++  +e + r+ +e+le+l +  ++   +k+++++ g+k+vi+pFw
  CDO71076.1 396 GENGVSMARGDGMLFRCHPILAAYIGDYPEQTLVACCKKGDCPKCPIPRDELGNStdTERAIRDIAEVLEALDSYDEGataYKDACERVGIKPVIQPFW 494
                 *****************************************************9755556888888888887777555889****************** PP

     Plavaka 292 edlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 + lp++di+ ++tpD+LHql++g++k Hl++W+
  CDO71076.1 495 QTLPYVDIYVSITPDILHQLYQGMIK-HLISWI 526
                 **************************.*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 6778.49
//
Query:       CDO71077.1  [L=617]
Description: hypothetical protein BN946_scf184844.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4008.11
//
Query:       CDO71078.1  [L=209]
Description: hypothetical protein BN946_scf184844.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00061   18.8  13.4      0.034   13.1   8.2    2.2  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.069   12.1   0.6      0.088   11.8   0.6    1.1  1  DUF4993   Domain of unknown function
      0.081   12.9   0.2          1    9.4   0.1    2.3  2  DUF3084   Protein of unknown function (DUF3084)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   8.2   5.6e-06     0.034     274     353 .]      42     124 ..       1     124 [. 0.67
   2 !   12.3   1.8   9.9e-06     0.059     122     188 ..     108     174 ..     104     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.6e-06
       MFS_1 274 rrrlllallllllaalglallavtssavllllvlvliGfglgfv....fpsllalasdlappeeagtasglfntagslggalgp 353
                 ++ l + ++++l++ ++l+++a+ts +  ++++ +l+G+ +gf+    f s+++++s+ ++   a +a++++++++s++++++p
  CDO71078.1  42 ETHLKVVIIACLCLPISLFWFAWTSGPETHWIAPALAGIPFGFAnvsiFFSFTSYTSRTYS-IWASSAAAANTFFRSVVASVFP 124
                 6778899*****************8888888888886665555532336666777777764.77889999999****9999987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.9e-06
       MFS_1 122 aigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 a +  + + s+ a + p+l+  +++ lg  +   ++a++sl ++ + +++++  p  r+r+++++e 
  CDO71078.1 108 AAAANTFFRSVVASVFPILAHTIVDRLGTKWGVTVFAFISLGLVPIPFVFIRFGPALRARSRHAREA 174
                 5566777778888999999999999999999999999999999889999999999999999998884 PP

>> DUF4993  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   1.5e-05     0.088      65      95 ..      87     117 ..      75     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.5e-05
     DUF4993  65 tsnyrlfpelaslsysifaPsnkalneffdr 95 
                 +s +  f++ +s +ysi+a s  a n+ff +
  CDO71078.1  87 VSIFFSFTSYTSRTYSIWASSAAAANTFFRS 117
                 678999***********************87 PP

>> DUF3084  Protein of unknown function (DUF3084)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00017         1      45      74 ..       3      32 ..       1      34 [. 0.87
   2 ?    1.0   0.0      0.07   4.2e+02      17      27 ..     129     139 ..     115     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00017
     DUF3084 45 vtiltGvliaaltlavllllseelrealfe 74
                +++  G++i+++t++ l+ lse++r  l+e
  CDO71078.1  3 LSVSIGMVISVVTFGPLVRLSERIRLPLIE 32
                67888*******************987765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.07
     DUF3084  17 ylgDrlGtkvG 27 
                 ++ DrlGtk+G
  CDO71078.1 129 TIVDRLGTKWG 139
                 688******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1446.44
//
Query:       CDO71079.1  [L=276]
Description: hypothetical protein BN946_scf184844.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-29  103.1   0.9    1.6e-27   96.0   0.0    2.3  2  ApoO            Apolipoprotein O
    1.9e-05   24.7  10.4     0.0015   18.5   8.8    2.3  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.045   13.8  17.0       0.14   12.3  16.0    2.2  2  LEA_4           Late embryogenesis abundant protein
       0.25   12.0   8.9        1.4    9.5   3.3    3.1  3  DUF883          Bacterial protein of unknown function (DUF883
       0.44   10.5  13.1        1.2    9.1   0.1    2.7  3  Phasin          Poly(hydroxyalcanoate) granule associated pro


Domain annotation for each model (and alignments):
>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   4.5e-31   1.6e-27      10     130 .]      40     159 ..      28     159 .. 0.93
   2 !    5.6   0.3     0.004        14      17      63 ..     226     272 ..     208     276 .] 0.66

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 4.5e-31
        ApoO  10 eeptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkeppedllPrlgyilvagLaGsilarrrsilkRvlyPlalgglaaslfy 108
                  e +++Le++++++R++++ +++ +++++++v s++   eq v+++++sL  p e+l+P+++y++va+L+Gs+lar+  ++ R++ P  l +l++++f+
  CDO71079.1  40 VETPSALEKQIGTARRAVTATYEDAHARVQNVISRWIGVEQAVETKVKSLIAPDEPLTPGILYVGVATLTGSVLARN-RLFWRLTLPPTLLVLSLHHFL 137
                 45667***********************************************************************5.5899***************** PP

        ApoO 109 Pqtakntgdllykyeqekvpav 130
                 P+t+ n++ +l ++e++++pa+
  CDO71079.1 138 PKTTHNVSAFLGELEERHFPAL 159
                 ********************85 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.004
        ApoO  17 eegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkepp 63 
                  + v+ + + + +  +av+++++++k +ve++ + v+d++    epp
  CDO71079.1 226 RQVVEAAKEKAVEAKAAVDQKVDEAKAAVEQKAEEVKDAVVPKEEPP 272
                 34455555566666666677777777777777777777776666655 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0037        13     147     179 ..      41      73 ..      13      88 .. 0.88
   2 !   18.5   8.8   4.1e-07    0.0015      78     174 ..     169     265 ..     139     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0037
                     -----SSSHHHHHHHTS-TTSHHHHHS--XXXX CS
  Apolipoprotein 147 eveerlssrveelrekleeqaeelrerleanle 179
                     e +++l++++  +r++++++ e+ ++r++ +++
      CDO71079.1  41 ETPSALEKQIGTARRAVTATYEDAHARVQNVIS 73 
                     778999*********************999876 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 4.1e-07
                     HHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHH.HHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHH CS
  Apolipoprotein  78 yteelrerlaadaeelqeqlavyaeelrerlerhve.alkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelr 171
                     ++    +r++++++  +e+l++ a  l  r+e++++ +l+++l+  ++++++ ++++  ++ e ++++a e +++++++v+e+++++e++aee++
      CDO71079.1 169 HSAMTWARVKEATQSGREALSTGAVSLVGRVEEATGlKLRETLG-WSDRAFKTVEAKTRQVVEAAKEKAVEAKAAVDQKVDEAKAAVEQKAEEVK 262
                     44444459999***********************8857888888.9************************************************9 PP

                     HS- CS
  Apolipoprotein 172 erl 174
                     + +
      CDO71079.1 263 DAV 265
                     876 PP

>> LEA_4  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  14.2   0.00021      0.75       7      43 ..     224     260 ..     219     261 .. 0.92
   2 ?   12.3  16.0   3.8e-05      0.14       2      38 ..     230     266 ..     229     270 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
       LEA_4   7 KakeaKDataeKageyKDyAaeKAgeaKDkaaekage 43 
                 K++++ +a++eKa e+K ++ +K  eaK ++ +ka+e
  CDO71079.1 224 KTRQVVEAAKEKAVEAKAAVDQKVDEAKAAVEQKAEE 260
                 999*************************999999998 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.8e-05
       LEA_4   2 dyaaeKakeaKDataeKageyKDyAaeKAgeaKDkaa 38 
                 ++a+eKa eaK a  +K+ e+K ++++KA+e KD+++
  CDO71079.1 230 EAAKEKAVEAKAAVDQKVDEAKAAVEQKAEEVKDAVV 266
                 79********************************987 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.023        81      25      53 ..      46      74 ..      35     116 .. 0.55
   2 ?   -0.7   0.1      0.65   2.3e+03      32      61 ..     173     202 ..     153     205 .. 0.63
   3 ?    9.5   3.3    0.0004       1.4      12      56 ..     219     263 ..     207     269 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.023
      DUF883 25 ageeaeelRerleerlerarerlrdaeea 53
                 ++++ ++R+ ++++ e+a +r++++  +
  CDO71079.1 46 LEKQIGTARRAVTATYEDAHARVQNVISR 74
                34445555555555555555555544444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.65
      DUF883  32 lRerleerlerarerlrdaeeavaerakea 61 
                   +r++e+ ++ re+l+  + +++ r++ea
  CDO71079.1 173 TWARVKEATQSGREALSTGAVSLVGRVEEA 202
                 445666666667777776666666666655 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0004
      DUF883  12 adleellkeaadeageeaeelRerleerlerarerlrdaeeavae 56 
                 +++e+ +++  + a+e+a e+++ +++++++a++++++ +e+v++
  CDO71079.1 219 KTVEAKTRQVVEAAKEKAVEAKAAVDQKVDEAKAAVEQKAEEVKD 263
                 444444555555566666666666666666666666666665554 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00034       1.2      51      95 ..      42      89 ..      36      92 .. 0.83
   2 ?   -1.4   0.0      0.61   2.2e+03      56      87 ..     171     202 ..     153     213 .. 0.57
   3 ?    4.1   7.2     0.012        43      39      75 ..     227     263 ..     201     270 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00034
      Phasin 51 tkkvaeekleevresvkskveevkekaee...qwdklekafdervaka 95
                t ++ e+++ ++r++v+++ e++++++++   +w  +e+a++++v++ 
  CDO71079.1 42 TPSALEKQIGTARRAVTATYEDAHARVQNvisRWIGVEQAVETKVKSL 89
                667899*****************9999862225668*********986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.61
      Phasin  56 eekleevresvkskveevkekaeeqwdkleka 87 
                 + ++  v+e+++s  e +++ a + + ++e+a
  CDO71079.1 171 AMTWARVKEATQSGREALSTGAVSLVGRVEEA 202
                 33444455555555555555555555555555 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.012
      Phasin  39 aLvkeGeklekktkkvaeekleevresvkskveevke 75 
                 + v++ ++   ++k+++++k++e++ +v++k+eevk+
  CDO71079.1 227 QVVEAAKEKAVEAKAAVDQKVDEAKAAVEQKAEEVKD 263
                 2222233333333444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 1804.00
//
Query:       CDO71080.1  [L=87]
Description: hypothetical protein BN946_scf184844.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 611.68
//
Query:       CDO71081.1  [L=537]
Description: hypothetical protein BN946_scf184844.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-40  136.4   0.0    1.3e-33  116.0   0.0    2.3  2  Mem_trans        Membrane transport protein
  ------ inclusion threshold ------
       0.57    9.8   7.9       0.21   11.2   4.3    2.1  2  YhhN             YhhN family
          1    9.0  12.1      0.044   13.5   3.7    2.3  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   2.1e-37   1.3e-33       2     298 ..      13     377 ..      12     387 .. 0.81
   2 !   17.3   0.8     2e-07    0.0012     307     386 ..     437     526 ..     418     527 .. 0.76

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 2.1e-37
   Mem_trans   2 vleavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfs 100
                  +e+++++++i++ gY+ +++ +i+++ +++ +nr++v++++P l+f++++   + ++l +++++++++++++l+++l+ ++ls i++++  +++++++
  CDO71081.1  13 TFESILEVFIICFAGYFLARK-GILDRTTQKKLNRLNVSIFTPSLLFSKVAFFLSPAKLRELWVIPIVFIVTTLVSMLVAYVLSIILRLKRSQRAFAIA 110
                 5899*****************.***************************************************************************** PP

   Mem_trans 101 lstlpNtlvlgipllkalyge.................ygvslmvqvvvlqciiiytlllflfeyrgaklliseefpdtaasivsikvdsdvvsldgrk 182
                  s + N+++l+i+ll++l+ +                 ++++++v++++l+ +++++++++l+ +    + +        + ++ + + s +++ ++  
  CDO71081.1 111 ASMFMNSNSLPIALLQSLVVTvpglkwgdddntdamvgRALTYLVLYSTLGMVVRWSYGVRLLSQA-DPEPV--------EAEADAREASPLLTPQEVP 200
                 ************************************************************999822.22222........2233344445555544444 PP

   Mem_trans 183 .pleteaeikedgklhvtvrksnasrsdivssstprpsnltnaeiyslq.................................................. 230
                  p   e+e        ++  +s++s+s++ s+++p++       + s++                                                  
  CDO71081.1 201 fPPSAEEE------RVLRHEASSSSVSSQDSRTKPQAGG---NPRVSVEeangrkffysfpntpasrltelpsasgttteyedndvedddefqlpparr 290
                 33333333......2334444455555555555555432...222233344466777788888888888888888889999999999************ PP

   Mem_trans 231 ............mtrlilimv...lr..klirnPntyssllglilslvsfkwnvimp...kiiqksisilgdaglpmalfslGlfLal 298
                             ++r++ ++v   +r  ++++  +++++l +l+++ ++++++ ++      ++ +i   g+ ++p+ l++lG+  ++
  CDO71081.1 291 tateptssrwqsRMRRLGRKVrkaWRtfREFMTAPLWAALASLVVACIQPLQH-ALDehfPPVKGAIASAGNCSIPITLVVLGAYFYT 377
                 ************55555555422244347899999******************.66657777999******************98765 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2e-07
   Mem_trans 307 nsvatfalavRlilgPlvmlvavla...vgLrgs.lllvaivq....aAlPqgivlfviAkey..nvherelstllifgmlialpitlvy 386
                 +++  +a++ R+i+ Pl++l+++++   ++L+      v++v+    +A+P++  l +i++    +++er+ s  +++++ + +p+ +++
  CDO71081.1 437 TKTVVVAILSRMIITPLLLLPLMVLstkFDLQEVfDDPVFVVSnvllIASPPALTLAQITQAAsgDAFERLISRTIFWSYCVVTPPSTII 526
                 4444556999********9876554222777777555566666999*************997633799****************998775 PP

>> YhhN  YhhN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.3   3.6e-05      0.21      65     152 ..      23     120 ..      18     137 .. 0.85
   2 ?   -2.2   0.1      0.44   2.6e+03      76     109 ..     318     351 ..     313     356 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.6e-05
        YhhN  65 ilYivafl.........eqratstlslllllllllaaavllalllprlgk.lkipvlvYalvistmvatAlesllslsslaallaalGallFviSDll 152
                 i++  +fl         +q++ ++l++ ++   ll++ v+++l   +l++   ip+++ ++++++m+++ + s+ +  ++++ ++a++a +F+ S +l
  CDO71081.1  23 ICFAGYFLarkgildrtTQKKLNRLNVSIFTPSLLFSKVAFFLSPAKLRElWVIPIVFIVTTLVSMLVAYVLSIILRLKRSQRAFAIAASMFMNSNSL 120
                 6777777788888888888899999999999999****999999999988577888888888888988877777899999999************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.44
        YhhN  76 atstlslllllllllaaavllalllprlgklkip 109
                 + ++++++l+++l+ ++++++  l + l++  +p
  CDO71081.1 318 FREFMTAPLWAALASLVVACIQPLQHALDEHFPP 351
                 5566777777777777777777777777665555 PP

>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.7   7.3e-06     0.044     117     233 ..      11     131 ..       7     137 .. 0.63
   2 ?   -0.4   1.3      0.13   7.9e+02     205     235 ..     497     527 ..     437     536 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.3e-06
  PhoLip_ATPase_C 117 lwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvale.tk...twt..liliililgsillyflflllyssllps 204
                      + ++e++++ +ii+f  y++ ++   ++ ++ +l+ + + +ft ++l   + ++l   k    w   +++i+++l+s+l+ +++ +++      
       CDO71081.1  11 KTTFESILEVFIICFAGYFLARKGILDRTTQKKLNRLNVSIFTPSLLFSKVAFFLSpAKlreLWVipIVFIVTTLVSMLVAYVLSIILR----L 100
                      568999****************99999************************99996333333332112333333334444444433443....3 PP

  PhoLip_ATPase_C 205 ..ssefygvleelfsspsfwlvlllvvvval 233
                        s++ + +++++f + +   + ll  +v++
       CDO71081.1 101 krSQRAFAIAASMFMNSNSLPIALLQSLVVT 131
                      4434444444555544444444444444433 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.13
  PhoLip_ATPase_C 205 ssefygvleelfsspsfwlvlllvvvvallp 235
                      +     ++e+l+s+  fw ++++++  ++++
       CDO71081.1 497 QAASGDAFERLISRTIFWSYCVVTPPSTIIF 527
                      2333334667777777777766666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3736.12
//
Query:       CDO71082.1  [L=495]
Description: hypothetical protein BN946_scf184844.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   15.1   3.4      0.034   13.7   3.4    1.6  1  PI3K_P85_iSH2   Phosphatidylinositol 3-kinase regulatory subu
      0.024   14.6   0.1      0.068   13.2   0.1    1.8  1  Spc42p          Spindle pole body component Spc42p
      0.035   14.2   0.7      0.093   12.8   0.7    1.7  1  Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
      0.045   14.2   5.3       0.18   12.2   5.3    2.1  1  ZapB            Cell division protein ZapB
       0.56   10.6   3.7        1.5    9.2   3.7    1.7  1  Csm1_N          Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.4   9.5e-06     0.034      72     125 ..     385     438 ..     377     449 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-06
  PI3K_P85_iSH2  72 ekfskeaqehEieklqenleqlksrlkelhsskekLeedlkqqkeeereleRei 125
                    ++f +   + Ei++l+e +++l++r + l++  ++L ++l++qk e   l+ +i
     CDO71082.1 385 ARFVRRFAQDEIHRLTEDNRLLRERCNILQDRNQELMQQLQEQKMEVTRLQTRI 438
                    67888889************************************9988887666 PP

>> Spc42p  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.9e-05     0.068       5      32 ..     415     442 ..     411     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
      Spc42p   5 kQNKeLnkkldekqeEierLnvlvgslR 32 
                   N eL+++l+e++ E+ rL+  ++++ 
  CDO71082.1 415 DRNQELMQQLQEQKMEVTRLQTRIETFQ 442
                 57********************999874 PP

>> Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   2.6e-05     0.093      38      72 ..     216     254 ..     215     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
  Myb_DNA-bind_5  38 sraWeeiaervna...lgsv.eRtaeelkkkwedlkrra 72 
                     ++aW+++a ++n+    +s+ +R+++ lk k++++ r a
      CDO71082.1 216 QHAWQKVAMKYNKwalKNSRpKREVKPLKAKYDNIVRLA 254
                     589*********999866666*************98765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.3   5.1e-05      0.18      18      63 ..     394     439 ..     392     471 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        ZapB  18 dtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlk 63 
                 d+i +L + ++ L+e+ + l+++n+el +++++ k e + +q r++
  CDO71082.1 394 DEIHRLTEDNRLLRERCNILQDRNQELMQQLQEQKMEVTRLQTRIE 439
                 4555555555555555555555555555555555555555555554 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.7   0.00042       1.5      22      64 ..     396     438 ..     392     443 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00042
      Csm1_N  22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerr 64 
                 +++l++ N++L+++ +  +++ ++L +ql+e + +v +l++r 
  CDO71082.1 396 IHRLTEDNRLLRERCNILQDRNQELMQQLQEQKMEVTRLQTRI 438
                 789999**************************99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1271  (0.0708907); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 2950.16
//
Query:       CDO71083.1  [L=413]
Description: hypothetical protein BN946_scf184844.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-12   45.0   0.0    1.3e-11   44.4   0.0    1.2  1  DDE_Tnp_4       DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.092   12.6   0.0        7.3    6.5   0.0    2.5  2  KcnmB2_inactiv  KCNMB2, ball and chain domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.4e-15   1.3e-11       1     142 [.     212     360 ..     212     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.4e-15
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFk.....lsekllvpy 94 
                 iDg+++ + + ++ e +++ty+++ + +   + +v++p+g       + pGs++D ++++   ++k+l+e+++ g++i+ D++F+     ++ ++  p 
  CDO71083.1 212 IDGMNLLTATADDPELENATYNGWLHGHYTSCILVFSPRGVLKGGVWNAPGSWHDAKVARP--IYKKLREQTPDGYFIVSDTAFPrgtrtIAGRIEAPL 308
                 799999999***********************************9999**********996..666666668999**********64333333445666 PP

   DDE_Tnp_4  95 kk.....kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlrikl 142
                 k      ++++q  ++  ++nr++ s r+++E+  + l++ f  lr +l+i+ 
  CDO71083.1 309 KSgarlpQDRAQ-RSSLLARNRQLVSFRQTAEWGVRQLRSGFGRLRLPLDIND 360
                 546665322333.3445899*************************99998875 PP

>> KcnmB2_inactiv  KCNMB2, ball and chain domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0   0.00082       7.3      19      27 ..     271     279 ..     256     280 .. 0.85
   2 ?    3.2   0.0    0.0083        75      19      27 ..     371     379 ..     366     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00082
  KcnmB2_inactiv  19 RsIYQKiRe 27 
                     R IY+K+Re
      CDO71083.1 271 RPIYKKLRE 279
                     99******9 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0083
  KcnmB2_inactiv  19 RsIYQKiRe 27 
                     Rs Y +i+e
      CDO71083.1 371 RSVYMRIWE 379
                     ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2898.32
//
Query:       CDO71084.1  [L=378]
Description: hypothetical protein BN946_scf184844.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0043   17.2  12.8     0.0064   16.6  12.8    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  12.8   3.6e-07    0.0064       2      33 ..     121     153 ..     120     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.6e-07
                 S-HHHHHCT---STSSSS-HHHHHCT..HHHCCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfy 33 
                 aC+nC +   +Cd+ +P C +C+k++   +C++ 
  CDO71084.1 121 ACTNCASACKRCDEARP-CERCIKYGlaETCVDG 153
                 9****************.********88889865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2623.51
//
Query:       CDO71085.1  [L=283]
Description: hypothetical protein BN946_scf184844.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-65  219.4   0.8    2.8e-64  216.9   0.8    1.8  1  MAM33     Mitochondrial glycoprotein


Domain annotation for each model (and alignments):
>> MAM33  Mitochondrial glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.9   0.8   1.6e-68   2.8e-64       1     212 []      64     281 ..      64     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 216.9 bits;  conditional E-value: 1.6e-68
       MAM33   1 LesEikyekeavkeeeeepesvkeflenggFeiedkpgkeevtLtrkfgdekIrvtfsvadlaneeeeeeeeeeeeedeaeeeeeeeeeeeee...... 93 
                 L++E+kye++a  ++  ep+++k f+ +g + ied +g++ev Ltrkfg+e Ir++fs+adl++e+e e ee ee ++e   ee+e +           
  CDO71085.1  64 LAEELKYEQDA--AAPGEPDFLKAFKAQGTWAIEDVAGMDEVSLTRKFGNEDIRLIFSIADLQTEQEPEFEEGEEATEEG--EESELP----Lhsypir 154
                 789*******8..56689**********************************************5555443322222222..233333....0224566 PP

       MAM33  94 ........eeesfpvrlsvtiekpgksggaLelectaqdgefvidnvsyykdaelakeetaeadwkrrllyeGPpFenLDedLqellerYLeerGIdee 184
                         + +   v +   ++ +g++ gaL ++++ q+g+fvidn+syy+da+  +e taeadwkrr+ y GP+F++LD +Lq+++ ++L+erGI+++
  CDO71085.1 155 cslsftkaSGSFTLVLFGTDVSLQGNAPGALTIDAMCQEGTFVIDNISYYNDAKVGTELTAEADWKRRGYYLGPQFDTLDISLQDEFDKFLQERGINQS 253
                 777776653333444455555555556677777777*************************************************************** PP

       MAM33 185 laefipdysevkEqkeYvrWLenvkkFv 212
                 la fip+y+e+kEqkeYv+WL+nvk+Fv
  CDO71085.1 254 LAYFIPEYAEYKEQKEYVSWLKNVKGFV 281
                 ***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 1661.33
//
Query:       CDO71086.1  [L=333]
Description: hypothetical protein BN946_scf184844.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2420.50
//
Query:       CDO71087.1  [L=137]
Description: hypothetical protein BN946_scf184844.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-06   26.3   0.5    0.00019   21.1   0.1    2.2  2  HTH_23         Homeodomain-like domain
    1.6e-05   25.0   0.5    3.3e-05   24.0   0.1    1.6  2  HTH_Tnp_Tc3_2  Transposase
     0.0052   17.4   0.1     0.0082   16.7   0.1    1.3  1  HTH_32         Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   3.1e-08   0.00019       4      46 ..       7      50 ..       4      52 .. 0.91
   2 ?    3.4   0.1     0.011        67      31      43 ..     101     112 ..      97     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.1e-08
      HTH_23  4 ereRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++ + ++l++ ++ Gl+ ++I r  g+s r + r +++yre G 
  CDO71087.1  7 KELKDLALKMSLVhGLPDKKIKRYTGISIRALKRLRQTYRETGE 50
                5667789**********************************995 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.011
      HTH_23  31 rrTvyrwlkryre 43 
                 r+T++r l+r  +
  CDO71087.1 101 RMTIWRTLRRS-Q 112
                 89*******95.3 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   6.6e+03      18      20 ..      37      39 ..      25      53 .. 0.52
   2 !   24.0   0.1   5.5e-09   3.3e-05       7      42 ..      75     111 ..      72     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  HTH_Tnp_Tc3_2 18 eLa 20
                   +L+
     CDO71087.1 37 ALK 39
                   333 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 5.5e-09
  HTH_Tnp_Tc3_2   7 lvrkdPritlreLanelkee.GksvsreTirrrLrka 42 
                    +++++P  tl+eL+ +l e+ +++v r+Ti+r+Lr++
     CDO71087.1  75 CIERQPDCTLQELQTQLLEVcNIEVLRMTIWRTLRRS 111
                    7899*******************************86 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.4e-06    0.0082       3      73 .]      39     108 ..      37     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
      HTH_32   3 srwlkRyneeGlegLkdrprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 
                  r ++ y+e+G   ++    +grpr l++     +   ++++p+ ++++l+ +l e   ++v + t++r L
  CDO71087.1  39 KRLRQTYRETGET-VRTPVCSGRPRNLDALDANFLEGCIERQPDCTLQELQTQLLEVCNIEVLRMTIWRTL 108
                 6899999999944.44444689*****************999**********995555899********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1052.03
//
Query:       CDO71088.1  [L=382]
Description: hypothetical protein BN946_scf184844.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-31  109.1   0.0      3e-31  108.8   0.0    1.1  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
        3.6    8.3   6.3          5    7.9   6.3    1.3  1  PRCC      Mitotic checkpoint regulator, MAD2B-interacting


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   3.4e-35     3e-31      18     228 ..     179     382 .]     162     382 .] 0.86

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 3.4e-35
     Plavaka  18 dpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereyt.de.kkg.ervysemmtgdwaweqqieekptegatlvpv 113
                  +++++++v+v+ ++       + +++ l++rd+++ +k++l np + +++d+ ++r  + de +++  r y+e  t+d awe+q  ++ ++ ++ + +
  CDO71088.1 179 LTPFTKHTVTVPYKK-------EFQSHSLYTRDVWDYLKDILCNPYLVSRMDWNAHRLHRfDEdTQTfVRFYDEPLTADAAWEIQ--SELPAAQCPLLL 268
                 456666777766644.......7899*****************************99877433234469****************..334668888889 PP

     Plavaka 114 ilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkeagkkgvvmtcadghvr 212
                 i+  DKT+ls f g  + yPv l  Gn+p ++r+     +  ++++Lpi   k  +k+k+    +k+ ++H+++ +ilep+ +  ++gv  +c+dg+ r
  CDO71088.1 269 IVYADKTKLSSF-GTAKGYPVVLKCGNLPVDIRNGEGIGGGRVVGWLPILDEKAGEKHKTGYVNLKHIVWHESFCKILEPILKHSHHGVWFHCGDGVDR 366
                 9***********.************************************7664444455555559********************************** PP

     Plavaka 213 rvipilaayiaDypEq 228
                 +  p++++   Dy+Eq
  CDO71088.1 367 CLCPCVVILSSDYEEQ 382
                 ***************9 PP

>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.3   0.00056         5       7      98 ..      17     112 ..       4     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00056
        PRCC   7 sasassssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea...mvpepteqdp.vkensknypgyyllps 98 
                 s s+ss+++ ++s p+++++p++ s+++   s++++p + + +++s+++ +++++ +++    s     ++++  ++++ + e+ + y +++ +p+
  CDO71088.1  17 SPSPSSTPSRSSSCPSSPASPTLLSPSSHAPSSPTSPSPLSLSAPSSSDPPSSEPATAPPMADSIRveyHPNSGIPTKVfAFEDFSRYRSTQSEPT 112
                 567888888888899999999999999998888888888777777776666665555544444444556777766666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2908.55
//
Query:       CDO71089.1  [L=215]
Description: hypothetical protein BN946_scf184844.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1696.91
//
Query:       CDO71090.1  [L=969]
Description: hypothetical protein BN946_scf184844.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1580  (0.0881254); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 6163.28
//
Query:       CDO71091.1  [L=211]
Description: hypothetical protein BN946_scf184844.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-09   35.4  18.9    7.5e-09   35.0  18.9    1.2  1  MFS_1       Major Facilitator Superfamily
     0.0028   16.6   3.3       0.25   10.2   0.0    2.2  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        6.4    7.3  10.1      0.095   13.1   1.7    2.4  3  HRG         Haem-transporter, endosomal/lysosomal, haem-respo


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0  18.9   1.3e-12   7.5e-09       2     167 ..      30     195 ..      19     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.3e-12
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGl 97 
                 ++++f+++l+++++++ l l  ++e  + +ps+   l+++  + ++++ l +G+l+d fG+  vl+ g ++ +++ ++++ f ++   +l+++ vl G+
  CDO71091.1  30 AISLFVVFLGIYTALTYLFLsGITEGVNPDPSF--YLTSIANASSLIGRLGAGVLADGFGPVNVLIPGTFIAGVM-TYAWpF-ATTKgFLVAVDVLYGA 124
                 578999999999988888888999999988888..78999***********************************.999989.77788*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvl 167
                  +g+++++    i+++ +  e g  ++++++ +s+Ga+ gp++ g+++++ g +  v y ++  ++ +++l
  CDO71091.1 125 SSGVFVSINPLPITRMGKVVEVGTNVSMVYSIMSCGALAGPPITGAILDHTGsFKNVGYYAGTCLMACVLL 195
                 *888888888888888888*****************************66666888877766666555443 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   1.9   0.00094       5.6     232     330 ..      33     129 ..      12     136 .. 0.62
   2 !   10.2   0.0   4.1e-05      0.25      35      82 ..     149     196 ..     145     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00094
  MFS_1_like 232 lvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgll 330
                 l++++lg+  ++ + Fl+   + ++   ++   l+ +  +++++  + a  l + +G v++li + ++  +      + +   +++ ++vL+g+s g++
  CDO71091.1  33 LFVVFLGIYTALTYLFLSGITEGVNPDPSF--YLTSIANASSLIGRLGAGVLADGFGPVNVLIPGTFIAGVMTYAWPFATTKGFLVAVDVLYGASSGVF 129
                 344444444444444444444333333322..3445556666666777777778888888888877777776666666677778888888888877765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 4.1e-05
  MFS_1_like  35 eigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsl 82 
                 ++ ++++i+   ++++ppi+g++ D++g  k+v   +  + ++++l l
  CDO71091.1 149 NVSMVYSIMSCGALAGPPITGAILDHTGSFKNVGYYAGTCLMACVLLL 196
                 57899999999*********************9988877777777633 PP

>> HRG  Haem-transporter, endosomal/lysosomal, haem-responsive gene
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.7   1.6e-05     0.095       6      44 ..      30      67 ..      27      74 .. 0.87
   2 ?   -2.4   0.1       1.1   6.5e+03      16      26 ..      96     106 ..      91     126 .. 0.58
   3 ?   -3.3   0.1       2.1   1.3e+04      17      25 ..     188     196 ..     181     200 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
         HRG  6 aygifgsilglsaflvylvlaivnkqgvslptSfylsav 44
                a+++f+++lg+  +l+yl+l ++ + gv  + Sfyl+++
  CDO71091.1 30 AISLFVVFLGIYTALTYLFLSGITE-GVNPDPSFYLTSI 67
                7899****************77766.588899***9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
         HRG  16 lsaflvylvla 26 
                 ++++ v + ++
  CDO71091.1  96 TFIAGVMTYAW 106
                 44444444433 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.1
         HRG  17 saflvylvl 25 
                 + +++ l l
  CDO71091.1 188 CLMACVLLL 196
                 444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1699.13
//
Query:       CDO71092.1  [L=289]
Description: hypothetical protein BN946_scf184844.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   54.9   0.1    1.9e-14   54.3   0.1    1.3  1  RNase_PH    3' exoribonuclease family, domain 1
  ------ inclusion threshold ------
       0.16   12.0   0.0         15    5.7   0.0    2.3  2  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   2.2e-18   1.9e-14       1     130 [.      16     148 ..      16     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.2e-18
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCTCE CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsillekkpkst 99 
                 +lR+lsi +  l + +GSa++ +G+tk l sv+gpie+rp  e ++++   +++v++ p+a        +++  +++l+ +l++ + +s+ l+++p++ 
  CDO71092.1  16 QLRDLSIVYEGLDRVDGSARFGFGSTKSLSSVSGPIEVRPTLE-NPSQ--ATLDVQIRPLA-------AIAGTDSKALATILKTVFASSLFLSHHPRTL 104
                 68************************************99999.5455..56666667999.......4688999************************ PP

                 EEEEEEEEECCC.............S-CHHHCHHHHHHHHHCTC CS
    RNase_PH 100 ididitvlssdg.............gslldalinaaslALadag 130
                 ++i+ + l+                ++l ++l+na+++A+++ag
  CDO71092.1 105 VQIVGQALCGTEsgsglgsagrgwnATLTASLVNATTVAFLSAG 148
                 *********97777889999999999**************9987 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0055        49       2      23 ..     155     182 ..     154     189 .. 0.86
   2 ?    5.7   0.0    0.0017        15      50      67 .]     224     241 ..     213     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0055
                 --EEEEEEEETTE......EEES--HHH CS
  RNase_PH_C   2 pviavtvgkvddq......fvlDptkeE 23 
                 +v+av++g+   +      ++lDp   E
  CDO71092.1 155 VVCAVAIGRLQADpssspiLILDPEEAE 182
                 79********977778899999998877 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0017
                 SCEEHHHHHHHHHHHHHH CS
  RNase_PH_C  50 sqldeetlleaielAkkg 67 
                 +++d +++++a+++Akkg
  CDO71092.1 224 GPFDVQEFKRACDFAKKG 241
                 349*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2100.99
//
Query:       CDO71093.1  [L=482]
Description: hypothetical protein BN946_scf184844.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   37.1  12.7      0.005   16.8   0.1    6.1  6  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.017   15.5   6.4       0.95   10.0   0.3    3.9  4  LRR_4     Leucine Rich repeats (2 copies)
       0.02   14.8   0.3      0.056   13.4   0.3    1.7  1  PsbI      Photosystem II reaction centre I protein (PSII 4.8 
      0.046   13.6   0.8       0.12   12.3   0.2    2.0  2  F-box     F-box domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.1e-06     0.005       4      23 ..      56      75 ..      55      76 .. 0.91
   2 !    8.1   0.5   0.00069       3.1       8      24 .]      92     108 ..      90     108 .. 0.90
   3 !    5.3   0.0    0.0056        25       2      20 ..     114     133 ..     113     137 .. 0.88
   4 !    7.0   0.3    0.0015       6.7       1      17 [.     142     159 ..     142     160 .. 0.90
   5 ?   -1.1   0.0      0.62   2.8e+03       3      16 ..     172     185 ..     171     188 .. 0.87
   6 ?    3.4   0.0     0.023     1e+02       4      23 ..     202     221 ..     199     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
       LRR_6  4 hLteLdLsgNdIgDeGaeaL 23
                ++t+L L +N++gDeG+e L
  CDO71093.1 56 SVTKLILGHNNLGDEGCEEL 75
                799**************988 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00069
       LRR_6   8 LdLsgNdIgDeGaeaLa 24 
                  +L++N+Ig+ G+ a++
  CDO71093.1  92 ISLNSNGIGNRGLLAIS 108
                 589************96 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0056
       LRR_6   2 nthLteLdLsgNd.IgDeGa 20 
                 nt+L+eL L+ N  +gD  +
  CDO71093.1 114 NTTLKELFLQNNAfVGDPSV 133
                 9************9999876 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0015
       LRR_6   1 snthLteLdLsgNd.IgD 17 
                 +++hL++L+Ls N  +gD
  CDO71093.1 142 NSSHLETLSLSTNSaLGD 159
                 589**********99998 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.62
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L+e +L+ ++++
  CDO71093.1 172 PYLREIQLNVCGLT 185
                 589*******9987 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.023
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                  L  L L+gN++   G+ ++
  CDO71093.1 202 QLHVLKLNGNQLRVRGVGSI 221
                 6999********99998666 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.045     2e+02       2      15 ..      56      69 ..      55      76 .. 0.86
   2 ?    3.5   0.1     0.023     1e+02      19      33 ..     111     125 ..      91     131 .. 0.55
   3 ?   10.0   0.3   0.00021      0.95       1      37 [.     115     158 ..     115     161 .. 0.73
   4 ?    3.8   0.1     0.019        86      24      36 ..     198     213 ..     174     218 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.045
                S--EEE--SS---E CS
       LRR_4  2 nLevLdLsnNqltd 15
                + ++L L++N+l d
  CDO71093.1 56 SVTKLILGHNNLGD 69
                5799*******997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.023
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 l+ ++ LkeL L +N
  CDO71093.1 111 LRDNTTLKELFLQNN 125
                 346777888888444 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00021
                 SS--EEE--SS-.--E-S-...HH...H-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnNq.ltdipl...le...klpnLkeLdLsgNnlit 37 
                 + L++L L+nN  + d +    l+   +  +L++L+Ls N+ ++
  CDO71093.1 115 TTLKELFLQNNAfVGDPSVaviLAlaiNSSHLETLSLSTNSALG 158
                 579*******965556444555224478999******9996665 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.019
                 T....--EEE-.-S--- CS
       LRR_4  24 n....LkeLdLsgNnli 36 
                 +    L++L L+gN ++
  CDO71093.1 198 ShrcqLHVLKLNGN-QL 213
                 44445666666666.44 PP

>> PsbI  Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   1.2e-05     0.056      21      30 ..      76      85 ..      75      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
        PsbI 21 FGfLsnDPsR 30
                FGfLs+DP+R
  CDO71093.1 76 FGFLSSDPGR 85
                *********9 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.98   4.4e+03       4      17 ..     243     289 ..     242     300 .. 0.53
   2 ?   12.3   0.2   2.6e-05      0.12       1      20 [.     355     374 ..     355     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.98
                 HHS-HH.................................HHHHHHHT CS
       F-box   4 srLPse.................................vlrhILer 17 
                 s+LP++                                  l+++ e+
  CDO71093.1 243 SSLPDDseassgeeddhrtrglrwqdvendlkrslarnlTLKNVVEK 289
                 77887755555555555555555555555555555555545555555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.6e-05
                 -HHHHS-HHHHHHHHHTS-H CS
       F-box   1 ftlsrLPsevlrhILerLpl 20 
                 f++ rLP e+ +hIL++L +
  CDO71093.1 355 FPFTRLPTELQLHILSFLAP 374
                 89***************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3614.26
//
Query:       CDO71094.1  [L=487]
Description: hypothetical protein BN946_scf184844.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-18   64.8   0.1    9.1e-18   64.1   0.1    1.4  1  TFIIE_alpha   TFIIE alpha subunit
    3.1e-06   27.4   1.9    4.1e-06   27.0   0.4    1.9  2  TFIIE-A_C     C-terminal general transcription factor TFIIE a
     0.0034   16.9   1.1        1.4    8.6   0.1    2.5  2  zf_UBZ        Ubiquitin-Binding Zinc Finger
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.039   14.3   0.0    1.9  1  PDZ           PDZ domain
      0.015   15.3   1.4        2.1    8.4   0.2    2.6  2  zf-C2H2_6     C2H2-type zinc finger
      0.022   14.3   0.3      0.022   14.3   0.3    1.9  2  TF_Zn_Ribbon  TFIIB zinc-binding
      0.033   14.3   1.4       0.08   13.1   1.4    1.6  1  TRAF6_Z2      TNF receptor-associated factor 6 zinc finger 2
       0.12   12.5   0.1       0.21   11.7   0.1    1.3  1  DiS_P_DiS     Bacterial Peptidase A24 N-terminal domain
       0.57   11.2   1.3        8.7    7.5   0.2    2.6  2  zf-C2H2_4     C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   4.6e-21   9.1e-18       2     102 ..      16     120 ..      15     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 4.6e-21
                  HHHHHHHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEE....TTTEEEEEEEEEECCCHCCCHHHHHHHHHHH CS
  TFIIE_alpha   2 llkevvrkfygeeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrd....eekswykyywrinyeklvdvvkrkleevvkk 95 
                  l++ v r fy+ +   v+d L+++ +++++dla  ++++l+el k+++ L + +lv + r+ +     + s+ + y++i+y+   +vvk+++ e++++
   CDO71094.1  16 LVQHVSRAFYEPKYTVVMDQLVRHPVLKDDDLAGRMGLQLKELNKIMATLEGHKLVRIYRQNElkegAQRSVGRQYFYIDYQSFCNVVKWRMAEMRRR 113
                  7999***********************************************************9988889999************************* PP

                  HHHHHCC CS
  TFIIE_alpha  96 Leeklek 102
                  + + l++
   CDO71094.1 114 IDQGLRN 120
                  *998875 PP

>> TFIIE-A_C  C-terminal general transcription factor TFIIE alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.5   8.9e+03      31      37 ..     373     378 ..     356     384 .. 0.48
   2 !   27.0   0.4   2.1e-09   4.1e-06      37      76 ..     445     482 ..     438     485 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.5
   TFIIE-A_C  31 eeeeeee 37 
                   e+ee+
  CDO71094.1 373 G-EDEED 378
                 2.22222 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.1e-09
   TFIIE-A_C  37 eaddptvmVaGrpvslsevsqrpelvsqmtpeEkeaYikv 76 
                 e+ddp+v V+G pv+ls+v++  e  + mtpeE  aY +v
  CDO71094.1 445 EEDDPVVYVNGEPVPLSQVTE--EHQEAMTPEEYTAYYEV 482
                 3468*****************..99************997 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00069       1.4       2      16 ..     126     140 ..     125     142 .. 0.83
   2 !    6.8   0.1    0.0025         5       2      17 ..     151     166 ..     150     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00069
      zf_UBZ   2 tylCerCgkeipese 16 
                  y+C++C+k+++  e
  CDO71094.1 126 GYICPQCQKSFQALE 140
                 69********98766 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0025
      zf_UBZ   2 tylCerCgkeipesel 17 
                 t+ C+ Cg+e+ e+e 
  CDO71094.1 151 TFNCDICGAEVIENEN 166
                 89*********99875 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-05     0.039      18      70 ..     416     472 ..     412     476 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
                 EETTSS.SSSSEEEEEECTTSHHHHHT.SSTTEEEEEETT..EETTTSHHHHHHHHH CS
         PDZ  18 ggsdqr.gdkgifvsevlpggaaeadg.lkvGDkIlsvNg..vdvenvsheeavqai 70 
                 g+ d+  ++++i+ + +   +++++ g ++++D ++ vNg  v++++v++e++ +++
  CDO71094.1 416 GQVDAVeAETPIYTNGIDVEPPPARNGaVEEDDPVVYVNGepVPLSQVTEEHQEAMT 472
                 5555556789999999999999999999************88889999999887765 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0011       2.1       2      12 ..     127     137 ..     127     139 .. 0.93
   2 ?    5.3   0.1      0.01        20       2       9 ..     152     159 ..     151     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
   zf-C2H2_6   2 heCsvCsksFp 12 
                 ++C++C ksF+
  CDO71094.1 127 YICPQCQKSFQ 137
                 89********8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.01
   zf-C2H2_6   2 heCsvCsk 9  
                 ++C++C++
  CDO71094.1 152 FNCDICGA 159
                 9*****98 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   1.1e-05     0.022       1      33 [.     127     166 ..     127     172 .. 0.83
   2 ?   -2.4   0.1       1.8   3.5e+03      26      35 ..     442     451 ..     442     452 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                   EEETTTTCEEC......HEETSTTCEEESSS.SBEEEECC CS
  TF_Zn_Ribbon   1 ykCPnCgstnl......veDpergelvCtdC.GlVledns 33 
                   y+CP C  +++      +++++ g++ C  C  +V+e++ 
    CDO71094.1 127 YICPQCQKSFQalevdrLFNAAMGTFNCDICgAEVIENEN 166
                   79*****99989*******************556666554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                   SBEEEECCCC CS
  TF_Zn_Ribbon  26 GlVlednsid 35 
                   G+V ed++++
    CDO71094.1 442 GAVEEDDPVV 451
                   89****9986 PP

>> TRAF6_Z2  TNF receptor-associated factor 6 zinc finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.4     4e-05      0.08       6      14 ..     129     137 ..     128     141 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
    TRAF6_Z2   6 CPQCQraFQ 14 
                 CPQCQ+ FQ
  CDO71094.1 129 CPQCQKSFQ 137
                 ********* PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011      0.21       7      61 ..      97     160 ..      94     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
   DiS_P_DiS   7 gSFlnvviyrlpk.........kkslvkprSrCpkCghklkwleliPvlSylllrgrCraCkak 61 
                  SF+nvv +r+ +         ++++ ++   Cp+C++++++le   ++   +    C  C+a+
  CDO71094.1  97 QSFCNVVKWRMAEmrrridqglRNDFDSKGYICPQCQKSFQALEVDRLFNAAMGTFNCDICGAE 160
                 69********98889999998777999999***********99988777777777777777765 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0044       8.7       1      10 [.     127     136 ..     127     140 .. 0.90
   2 ?    1.6   0.1      0.34   6.8e+02       1       8 [.     152     159 ..     152     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0044
   zf-C2H2_4   1 fkCpiCgksF 10 
                 ++Cp+C+ksF
  CDO71094.1 127 YICPQCQKSF 136
                 89*******9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.34
   zf-C2H2_4   1 fkCpiCgk 8  
                 f C+iCg+
  CDO71094.1 152 FNCDICGA 159
                 89****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3413.24
//
Query:       CDO71095.1  [L=191]
Description: hypothetical protein BN946_scf184844.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-18   64.5   0.0    1.1e-17   64.1   0.0    1.2  1  adh_short     short chain dehydrogenase
    3.4e-09   36.6   0.0    1.1e-08   34.9   0.0    1.7  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
        0.2   11.3   0.0       0.29   10.8   0.0    1.3  1  DUF953        Eukaryotic protein of unknown function (DUF953)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.9e-21   1.1e-17       2     139 ..      21     191 .]      20     191 .] 0.88

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.9e-21
                 EEEEESTT....SHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT......TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S... CS
   adh_short   2 vvlvtGas....sGIGraiakelakeGakvvvvdrseekleevakelkee......gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi... 87 
                 v++vtG++    +GIG+ i+ +l+++Ga+v++++ ++++l ++a+  +e+        +++ i++Dv+ ++e+ +l +++ k+ +++ vL nNAG+   
  CDO71095.1  21 VAVVTGGGtrnrQGIGLMISSTLLANGATVYIIGPKQADLDKIANVYNEAaekakkPGRMYGIEGDVRLKSEALRLAQEVGKREKHITVLFNNAGVtsg 119
                 7999999645558***********************9999988887777654344344599************************************** PP

                 ............S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH........HCTTEEEEEEEEGGG CS
   adh_short  88 ............tgsgpfselseeewervievNltgvflltravlpaml........kqssGrIvnvsSvag 139
                              +++ f e+ ee+++  +++N +g+++lt a+lp +         ++ + +Iv +sS++g
  CDO71095.1 120 sfkkpdvasaeaYRRAYFDEVPEEAFDHNFKTNAVGPYWLTFAFLPLLEkwkespggARFAPQIVMTSSMNG 191
                 ********999999999******************************9988755554455558999999987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.9e-12   1.1e-08       4     120 ..      33     170 ..      28     191 .] 0.80

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.9e-12
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE........EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.......... CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev........lecDVtdeeqvealveevvekfgklDilvnnagiapk.......... 82 
                   +gIG  i  +l ++Ga+v +   ++++ ++++++ +e  +++        +e DV+ +++  +l++ev ++ +++ +l+nnag++            
    CDO71095.1  33 QGIGLMISSTLLANGATVYIIGPKQADLDKIANVYNEAAEKAkkpgrmygIEGDVRLKSEALRLAQEVGKREKHITVLFNNAGVTSGsfkkpdvasa 129
                   8*******************999998866665555554433223334479**********************************9877767777776 PP

                   ...CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC CS
  adh_short_C2  83 ...lkgpfletsreefdraldvnlyslfllakaalplmkeg 120
                       ++ f e+++e fd+ +++n+ + + l+ a+lpl++++
    CDO71095.1 130 eayRRAYFDEVPEEAFDHNFKTNAVGPYWLTFAFLPLLEKW 170
                   66555667789*************************99886 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.8e-05      0.29       5      63 ..      90     151 ..      86     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHH..TSSSEEEEEEB--B-TTS-BSSHHHHHHHHHHHHHHHH-SS...-EEEEE CS
      DUF953   5 yeefekslkelekeskivfilFlgekdteGesWCPdCvkaepvieealkeape...dvklvr 63 
                 ++e+ +  +e++k++k++ +lF     t+G    Pd  +ae   +  + e+pe   d ++ +
  CDO71095.1  90 KSEALRLAQEVGKREKHITVLFNNAGVTSGSFKKPDVASAEAYRRAYFDEVPEeafDHNFKT 151
                 56666778899********************************9999999999444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1319.98
//
Query:       CDO71096.1  [L=109]
Description: hypothetical protein BN946_scf184844.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-12   47.0   0.0    3.8e-12   46.3   0.0    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    7.4e-07   28.8   0.0      1e-06   28.4   0.0    1.1  1  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   4.3e-16   3.8e-12     144     232 ..       3     100 ..       1     101 [. 0.80

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 4.3e-16
                   HHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT...HHH..HHHHHHHHSTTSS.....-B-HHHHHHHHHHHCSGGGTT--SEEEEE CS
  adh_short_C2 144 aKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg...fde..lleelearaplgr.....lgtpeevaeaalfLasdeasyitGqtlvv 229
                   +K a+ + t +lA+el p giRvN ++pg+  T++ a g ++   +++    ++++ ++pl r     +gtp+++++++lfL+ ++  ++ G+t+ +
    CDO71096.1   3 SKSAIGHATASLAHELIPLGIRVNGIAPGFFITEMtAPGTADaigQSKlpPNRQFQFEIPLSRpgenkAGTPKDMGALVLFLVANW--FVDGETVLI 97 
                   8*********************************9533444344333322456677788887633334679*************99..********* PP

                   STT CS
  adh_short_C2 230 DgG 232
                   DgG
    CDO71096.1  98 DGG 100
                   *** PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.1e-10     1e-06     152     189 ..       3      40 ..       2      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 152 sKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 sK a+ + t sla+el p girvn++aPG++ T+m+++
  CDO71096.1   3 SKSAIGHATASLAHELIPLGIRVNGIAPGFFITEMTAP 40 
                 9**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 849.86
//
Query:       CDO71097.1  [L=317]
Description: hypothetical protein BN946_scf184844.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.7    6.8   7.3        5.5    6.2   7.3    1.2  1  NOA36     NOA36 protein


Domain annotation for each model (and alignments):
>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.3   0.00031       5.5     221     300 ..      13      88 ..       7      98 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00031
       NOA36 221 qetkdlslstrslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeee 300
                 qe++dl+ s +      +++++g+d+d+    d d ++ +++ asg++ dd ++ed+  d+ ++  +  + d+d+ + ++
  CDO71097.1  13 QESRDLTTSFKPTALPFHRHGQGRDKDE----DLDANNVFGNHASGSQGDDASHEDNSGDSSKDGGSGGNSDSDKSDPSN 88 
                 6788999998877766666666677666....556666777777777777777777776666555444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 2083.41
//
Query:       CDO71098.1  [L=294]
Description: hypothetical protein BN946_scf184844.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-44  152.6   0.1    6.6e-43  147.0   0.1    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.1   3.7e-47   6.6e-43       2     293 ..      18     270 ..      17     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 3.7e-47
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   lglGtw      + ++  + +++ +al++G++++DtA +Y    +e+++G  +k+s+++re+++++tK+        ++  + +++ +le+slk L+
    CDO71098.1  18 LGLGTW------KSQPGAVEKAVAHALKNGYRHIDTATAY---ANEREVGIGIKESGVPREQIFLTTKL--------ANKDQRDVEGALERSLKALD 97 
                   788888......4457799999******************...**************************........888899************** PP

                   -S-EEEEEE-S--TTS-.........HHHHHHHHHHHHHTT..SEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-E CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp........sieevldaleelvkeG..kiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvp 185
                   t y+Dl+l+H+p p+++        + +++++ +e ++k++  k++aiGvSnfsv  l+++++ + v ++++q+e+++     +e ++e c+k+g+ 
    CDO71098.1  98 TPYLDLWLMHWPCPMTKdgkadksrDWLDTWKDMERVYKAHpdKVKAIGVSNFSVSYLRRLLENSSVVPAVNQIECHPA--CMQEDIVEECRKHGIV 192
                   ***************************************7666************************************..9999************ PP

                   EEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG---- CS
  Aldo_ket_red 186 liaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelkls 282
                   + aysplg+         ++++                  l+++++++++ak++gv+++++ ++    + ++++vip++ n++++++n++    +ls
    CDO71098.1 193 VTAYSPLGS---------DDSP------------------LLTNPTVQKVAKKYGVEPSTVLISLQA-NRPNVTVIPKSVNPARIDQNAKII--DLS 259
                   ********3.........2222..................4899********************998.5778899*****************..*** PP

                   HHHHHHHHHHH CS
  Aldo_ket_red 283 eeevaeldell 293
                   ee+++el++++
    CDO71098.1 260 EEDINELASVE 270
                   *******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1986.68
//
Query:       CDO71099.1  [L=794]
Description: hypothetical protein BN946_scf184844.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-15   55.6   0.0      1e-14   54.5   0.0    1.6  1  PX              PX domain
    1.4e-12   47.6   0.5    1.7e-11   44.1   0.5    2.1  2  BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
  ------ inclusion threshold ------
      0.029   14.3   0.1      0.063   13.2   0.1    1.5  1  PGDH_C          Phosphogluconate dehydrogenase (decarboxylati
       0.14   11.8   0.0       0.29   10.8   0.0    1.4  1  DNA_alkylation  DNA alkylation repair enzyme


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.3e-18     1e-14      16      97 ..     318     417 ..     304     427 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.3e-18
                 TSSEEEEEEEEEETTS.....................SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHH CS
          PX  16 skkhsyylyevelktg.....................akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqr 93 
                 + ++ y++y+v++  +                       + tv+Rr+s+F+ Lh+ L+r  p++ +PplP+k+  g+   ++++f+e rr +Le+y++r
  CDO71099.1 318 TLSGAYTMYTVTTAFEafsharsgfessdeyedgppsPMRITVHRRFSHFVALHTALTRLLPGIALPPLPEKQYAGR---FSDDFVEARRGDLERYINR 413
                 55566666666666666666666666666677778888899********************************9998...******************9 PP

                 HHTS CS
          PX  94 llnh 97 
                  ++ 
  CDO71099.1 414 AVRA 417
                 9876 PP

>> BAR_3_WASP_bdg  WASP-binding domain of Sorting nexin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.057   2.5e+02      21      62 ..     457     498 ..     454     511 .. 0.81
   2 !   44.1   0.5   3.8e-15   1.7e-11     102     225 ..     571     687 ..     563     695 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.057
  BAR_3_WASP_bdg  21 kflstie.PeaeelDlqeveqkveafkkftkkmdesvkellev 62 
                     +f+  +  P   ++D +e  + +++f + t+++ ++v++l++ 
      CDO71099.1 457 AFYANVYhPA-FNVDAEEASEAIDRFVNHTRAVGKGVQSLRNL 498
                     5666666366.999*********************99999875 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 3.8e-15
  BAR_3_WASP_bdg 102 aLnealaatgktYeeigevfaeqpkkDleflletleeYkGllanfPDiigvhkgalekvkesdklveegklsseekeklkkrvsvisyallaein 196
                     +L++a+ +t++t + ++++ ++++++      e+l+      + +  +++ hk+ l++  e+        l+ +e e++  r++++   ++ae++
      CDO71099.1 571 KLTKAMQKTSETLQIVADLYDDHARRTQLATHEALKNVAHPSTLYAPVVDTHKSTLSRYNEA-------VLEGAESEEMAARCETVLNITMAEMD 658
                     79***********************9999999999999998999999**************9.......566799******************** PP

  BAR_3_WASP_bdg 197 hfhserieDfksvmqlyLkqqvkfyqkia 225
                      +h++++ Df+++ + +L   + fy++++
      CDO71099.1 659 TYHTQKVDDFQNLAKEHLDGEIAFYEQVG 687
                     **************************996 PP

>> PGDH_C  Phosphogluconate dehydrogenase (decarboxylating) C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.4e-05     0.063      42      85 ..     612     657 ..     584     683 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
                 HHHT-SEEEEEE--HHHH..HHHTTHHHHCTHHHHHHHHHHHHHHH CS
      PGDH_C  42 ktiyaPverayrvtveql..AllEPtlsEtvaatllevlrealdev 85 
                  t+yaPv+++++ t+ +   A+lE + sE +aa + +vl+ ++ e+
  CDO71099.1 612 STLYAPVVDTHKSTLSRYneAVLEGAESEEMAARCETVLNITMAEM 657
                 489**********99875559******************9999875 PP

>> DNA_alkylation  DNA alkylation repair enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.5e-05      0.29     132     202 ..     557     627 ..     549     630 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.5e-05
  DNA_alkylation 132 enlWerRaAivatlklikk.tdlellleiaeelladkedfiqkAiGwaLrelsktdpdlveeFlekhakrmp 202
                     +  W+ R  + + lkl+k+ ++++++l+i+++l +d   ++q A+  aL++++     l+   +++h+++++
      CDO71099.1 557 DGAWCWRENCASCLKLTKAmQKTSETLQIVADLYDDHARRTQLATHEALKNVAHP-STLYAPVVDTHKSTLS 627
                     567888999999999999999******************************9964.3455555666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.57
# Mc/sec: 4169.28
//
Query:       CDO71100.1  [L=95]
Description: hypothetical protein BN946_scf184844.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.36s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 529.96
//
Query:       CDO71101.1  [L=1553]
Description: hypothetical protein BN946_scf184844.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-76  249.3  59.6    1.1e-07   32.4   0.3   12.8 12  WD40            WD domain, G-beta repeat
    1.1e-22   80.1  15.6    4.3e-05   23.7   0.1   10.4 11  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    2.7e-09   37.2   1.4      0.054   13.4   0.1    3.5  3  eIF2A           Eukaryotic translation initiation factor eIF2
    3.5e-09   36.1   4.3       0.15   11.0   0.0    7.1  9  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin
    1.5e-07   32.0   0.0    6.6e-07   29.9   0.0    2.2  1  AAA_16          AAA ATPase domain
    3.7e-06   27.0   0.0    7.2e-06   26.0   0.0    1.5  1  NACHT           NACHT domain
     0.0023   16.5   1.3      0.029   12.9   0.1    3.0  3  Cytochrom_D1    Cytochrome D1 heme domain
     0.0029   17.9   0.0     0.0063   16.8   0.0    1.5  1  AAA_22          AAA domain
     0.0036   15.7   0.3        0.9    7.8   0.1    3.8  4  Frtz            WD repeat-containing and planar cell polarity
     0.0068   15.5   0.1       0.32   10.0   0.0    2.3  2  Coatomer_WDAD   Coatomer WD associated region
     0.0074   16.6   0.6        4.5    7.7   0.0    3.6  3  LPP             Lipoprotein leucine-zipper
     0.0086   15.4   0.3      0.038   13.3   0.2    1.8  2  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
     0.0096   15.0   0.0      0.016   14.3   0.0    1.2  1  Parvo_NS1       Parvovirus non-structural protein NS1
  ------ inclusion threshold ------
      0.031   13.6   0.0         10    5.4   0.0    3.4  4  WD40_like       WD40-like domain
      0.033   14.2   0.4         36    4.4   0.0    4.8  4  PD40            WD40-like Beta Propeller Repeat
       0.12   11.0  14.1       0.34    9.5   0.1    4.5  5  Nup160          Nucleoporin Nup120/160
       0.37   10.1   5.1        1.7    7.9   0.0    3.9  5  Nbas_N          Neuroblastoma-amplified sequence, N terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   7.1e-08   7.5e-05       4      38 .]     847     882 ..     844     882 .. 0.89
   2 !   31.7   0.1   1.7e-10   1.8e-07       1      38 []     886     924 ..     886     924 .. 0.92
   3 !   21.1   1.2   3.9e-07   0.00041       2      37 ..     929     965 ..     928     965 .. 0.93
   4 !   14.0   0.1   6.9e-05     0.073       5      38 .]     974    1007 ..     970    1007 .. 0.88
   5 !   23.2   0.3   8.3e-08   8.8e-05       2      38 .]    1012    1048 ..    1011    1048 .. 0.93
   6 !   32.0   3.4   1.4e-10   1.5e-07       2      38 .]    1053    1090 ..    1052    1090 .. 0.95
   7 !   32.4   0.3   1.1e-10   1.1e-07       3      37 ..    1096    1131 ..    1094    1132 .. 0.90
   8 !   30.9   0.3     3e-10   3.2e-07       7      38 .]    1176    1208 ..    1167    1208 .. 0.83
   9 !   27.4   1.2   3.8e-09   4.1e-06       3      38 .]    1214    1251 ..    1212    1251 .. 0.87
  10 !   24.0   0.5   4.6e-08   4.8e-05       2      37 ..    1256    1292 ..    1255    1293 .. 0.91
  11 !    8.6   0.0    0.0035       3.7       8      31 ..    1309    1332 ..    1301    1334 .. 0.83
  12 !   14.6   0.1   4.4e-05     0.047       8      38 .]    1384    1415 ..    1379    1415 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 7.1e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ ++H + v+++a+spdg  ++s+s+D  +++Wd
  CDO71101.1 847 ITSTEAHkGRVHAVAYSPDGERIVSCSEDWLIMLWD 882
                 556789*555*************************9 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.7e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++l++l+GH   v+s+ fsp+g+ l+s+sdD tv++Wd
  CDO71101.1 886 GRQLHVLEGHsARVCSVVFSPSGKELLSASDDLTVKVWD 924
                 5789******555*************************9 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 3.9e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  cl t++ H  +v+s+a+s+dg + asGs+D +v +W
  CDO71101.1 929 ACLVTWKRHtRDVRSVAWSSDGVYAASGSYDSKVILW 965
                 69999999*777************************* PP

  == domain 4  score: 14.0 bits;  conditional E-value: 6.9e-05
                  EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  +++t H   v  + f +dg++l++G+ D+t ++W+
  CDO71101.1  974 TVFTDHrAEVDQVVFASDGDLLSAGH-DCTSKMWS 1007
                  57899988899999********9999.*******5 PP

  == domain 5  score: 23.2 bits;  conditional E-value: 8.3e-08
                  EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  +c+rt+t H   v  +a+s+d++++a+G+dD +v +W+
  CDO71101.1 1012 SCIRTFT-HaARVMTVAVSKDSRLVACGCDDTSVVLWN 1048
                  79****6.9677*************************8 PP

  == domain 6  score: 32.0 bits;  conditional E-value: 1.4e-10
                  EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  + l+tl  H s+++sl+fspd + lasGs+D+t  +Wd
  CDO71101.1 1053 ERLHTLNHHaSWIWSLDFSPDDRILASGSWDHTMCLWD 1090
                  679****9*999*************************9 PP

  == domain 7  score: 32.4 bits;  conditional E-value: 1.1e-10
                  EEEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40    3 clrtltGH.ssvtslafspdgawlasG.sdDgtvriW 37  
                  +l+tl GH + v +++fspdg+ +++G + D++vriW
  CDO71101.1 1096 HLQTLLGHaDQVLCVRFSPDGSHIVTGeC-DHSVRIW 1131
                  688999**777****************66.******* PP

  == domain 8  score: 30.9 bits;  conditional E-value: 3e-10
                  EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   + H s+v+ ++fsp+ga++a++ +DgtvriWd
  CDO71101.1 1176 GEHHaSGVRVVSFSPNGALIATAAWDGTVRIWD 1208
                  3467888*************************9 PP

  == domain 9  score: 27.4 bits;  conditional E-value: 3.8e-09
                  EEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40    3 clrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38  
                   ++tl+GH + +ts+ +s++g++la +G+ D+++ iW+
  CDO71101.1 1214 RVKTLEGHEHlITSCTWSRSGKLLAsTGDHDHSINIWN 1251
                  5899****7789************945656*******8 PP

  == domain 10  score: 24.0 bits;  conditional E-value: 4.6e-08
                  EEEEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40    2 qclrtltGH.ssv.tslafspdgawlasGsdDgtvriW 37  
                  + l ++t H ++v ts+ f pd + l+s+sdDg++r+W
  CDO71101.1 1256 KSLAKFTQHiGGVwTSI-FTPDEQRLVSCSDDGSIRLW 1292
                  67889****99997888.******************** PP

  == domain 11  score: 8.6 bits;  conditional E-value: 0.0035
                  ESSSSEEEEEEETTSSEEEEEETT CS
        WD40    8 tGHssvtslafspdgawlasGsdD 31  
                   G ++++sla s d +wl+sGs D
  CDO71101.1 1309 QGKGPIYSLALSADAQWLLSGSLD 1332
                  45566****************966 PP

  == domain 12  score: 14.6 bits;  conditional E-value: 4.4e-05
                  ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  + H s v s+afs+d++  +sGs Dg + ++d
  CDO71101.1 1384 ENHaSTVASVAFSRDSTRALSGSQDGRIFVYD 1415
                  569777************99**********98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.7e-05     0.081      33      88 ..     849     903 ..     835     906 .. 0.87
   2 !   13.6   0.1   5.7e-05     0.061      37      91 ..     895     948 ..     891     949 .. 0.92
   3 !    9.5   0.2    0.0011       1.2      29      86 ..     922     985 ..     919     991 .. 0.82
   4 ?    3.7   0.0     0.073        77      36      81 ..     978    1022 ..     964    1029 .. 0.84
   5 !    8.6   0.3    0.0021       2.2      36      80 ..    1018    1062 ..    1003    1066 .. 0.85
   6 !   14.7   0.2   2.7e-05     0.028       9      90 ..    1034    1113 ..    1033    1115 .. 0.86
   7 !   23.7   0.1   4.1e-08   4.3e-05      33      90 ..    1175    1231 ..    1166    1231 .. 0.91
   8 !   11.3   0.1    0.0003      0.31      35      79 ..    1219    1264 ..    1214    1273 .. 0.85
   9 ?    3.6   0.0     0.077        81      46      71 ..    1273    1298 ..    1266    1302 .. 0.91
  10 ?   -1.0   0.0       2.1   2.2e+03      35      67 ..    1384    1416 ..    1371    1419 .. 0.85
  11 ?    1.5   0.0      0.36   3.8e+02      48      68 ..    1531    1551 ..    1522    1553 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.7e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++++++++v+++a++pdg+ ++   +d  + l da +g+ +h l+ +s  +v+++ 
   CDO71101.1 849 STEAHKGRVHAVAYSPDGERIVSCSEDWLIMLWDARTGRQLHVLEGHSA-RVCSVV 903
                  568999**************************************99998.477765 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.7e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  ++ +v s+ ++p+gk L  a +d +v++ da +g ++ +++ ++ + v ++ W++
   CDO71101.1 895 HSARVCSVVFSPSGKELLSASDDLTVKVWDATTGACLVTWKRHTRD-VRSVAWSS 948
                  6678999************************************996.******86 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  vw++       + + + + vrs+aW+ dg   a +  d++v l  + s ++   ++ ++ + v  
   CDO71101.1 922 VWDAttgaclvTWKRHTRDVRSVAWSSDGVYAASGSYDSKVILWPVASPQTATVFTDHRAE-VDQ 985
                  666666666666678999****************************999999999888774.555 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.073
  ANAPC4_WD40   36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81  
                   ++  ev ++ +  dg lL  ++ d + ++ +++s+ ++++++ ++ 
   CDO71101.1  978 DHRAEVDQVVFASDGDLLSAGH-DCTSKMWSVQSKSCIRTFTHAAR 1022
                   56789***********998776.8999************9987665 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.0021
  ANAPC4_WD40   36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80  
                   ++  +v  +a ++d +l a +++d++v l +  +g+ +h+l+ ++
   CDO71101.1 1018 THAARVMTVAVSKDSRLVACGCDDTSVVLWNKATGERLHTLNHHA 1062
                   56778999999*****************************98775 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 2.7e-05
  ANAPC4_WD40    9 LiAlatedgellv.fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90  
                   L+A + +d ++++ +   g+r+ tl  +++ s + sL ++pd+++La +  d ++ l d+ +++ +++l  +++ +v c+ ++
   CDO71101.1 1034 LVACGCDDTSVVLwNKATGERLHTL--NHHASWIWSLDFSPDDRILASGSWDHTMCLWDVATATHLQTLLGHAD-QVLCVRFS 1113
                   6677777777665256788999999..899999************************************88888.59999885 PP

  == domain 7  score: 23.7 bits;  conditional E-value: 4.1e-08
  ANAPC4_WD40   33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90  
                   + +++ s vr ++++p+g l+a a  dg+vr+ d+ +g+ v++l+ +++  +t+ +W+
   CDO71101.1 1175 TGEHHASGVRVVSFSPNGALIATAAWDGTVRIWDVATGTRVKTLEGHEHL-ITSCTWS 1231
                   56778899***************************************996.9999995 PP

  == domain 8  score: 11.3 bits;  conditional E-value: 0.0003
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLav.aysdgevrlldaesgkvvhslsvk 79  
                   +++++ ++s  W+ +gklLa  + +d ++++ ++  gk + +++ +
   CDO71101.1 1219 EGHEHLITSCTWSRSGKLLAStGDHDHSINIWNVAAGKSLAKFTQH 1264
                   567889**************7367899*************999876 PP

  == domain 9  score: 3.6 bits;  conditional E-value: 0.077
  ANAPC4_WD40   46 WkpdgklLavaysdgevrlldaesgk 71  
                   + pd++ L+   +dg++rl ++ ++k
   CDO71101.1 1273 FTPDEQRLVSCSDDGSIRLWHVDNTK 1298
                   789*******************9987 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 2.1
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrllda 67  
                   +++ s+v s+a++ d +    + +dg++ ++d 
   CDO71101.1 1384 ENHASTVASVAFSRDSTRALSGSQDGRIFVYDF 1416
                   478899*********************999885 PP

  == domain 11  score: 1.5 bits;  conditional E-value: 0.36
  ANAPC4_WD40   48 pdgklLavaysdgevrlldae 68  
                   ++g++ a++++ g++ +lda+
   CDO71101.1 1531 MKGHIVAFGTKHGQLVILDAS 1551
                   57****************997 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00084      0.89      58     158 ..     853     953 ..     839     962 .. 0.77
   2 !   11.3   0.0   0.00022      0.23      68     169 ..    1029    1130 ..    1002    1139 .. 0.75
   3 !   13.4   0.1   5.1e-05     0.054     105     178 ..    1185    1252 ..    1161    1263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00084
                 SSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEE..EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE CS
       eIF2A  58 kegpihdvaWspkskefaviyGkmpakvslfdlk.vkviskle..eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvew 151
                 ++g +h+va+sp+++++  +    +  + l+d + +++++ le  +++  +++fsp+gk +l a   +l  ++++wd ++  ++ + +    +  +v w
  CDO71101.1 853 HKGRVHAVAYSPDGERI--VSCSEDWLIMLWDARtGRQLHVLEghSARVCSVVFSPSGKELLSAS-DDL--TVKVWDATTGACLVTWKrhTRDVRSVAW 946
                 6899***********96..5567899*******7666666665115566789********99987.788..8*******666665554115678899** PP

                 -TTSSEE CS
       eIF2A 152 spdgryv 158
                 s dg y 
  CDO71101.1 947 SSDGVYA 953
                 ****986 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00022
                  -TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEES-..-EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE..E-TT--EEEE-TTSSEEE CS
       eIF2A   68 spkskefaviyGkmpakvslfdlk.vkviskleeqkr..NtiffspkgklvllaGfgnlaGeleiwdvkkkkkiaka..eaanatlvewspdgryvl 159 
                  s++s+  +v  G  + +v+l+++  ++ +++l++++    ++ fsp +++++ +    +   + +wdv + ++++++  +a +   v +spdg++++
  CDO71101.1 1029 SKDSR--LVACGCDDTSVVLWNKAtGERLHTLNHHASwiWSLDFSPDDRILASGSWDHT---MCLWDVATATHLQTLlgHADQVLCVRFSPDGSHIV 1120
                  44443..6777999999****9954999999988876225799*********9999988...9******9999988643445555669********* PP

                  EEE-TTT-SS CS
       eIF2A  160 Tattaprlrv 169 
                  T  +  ++r+
  CDO71101.1 1121 TGECDHSVRI 1130
                  *877655554 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 5.1e-05
                  EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEET CS
       eIF2A  105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvewspdgryvlTattaprlrvdngfkiwsy 178 
                   + fsp+g l+++a      G++ iwdv + + ++++e  +   t++ ws +g++++    +     d +++iw++
  CDO71101.1 1185 VVSFSPNGALIATAAW---DGTVRIWDVATGTRVKTLEghEHLITSCTWSRSGKLLASTGDH-----DHSINIWNV 1252
                  689***********87...588*******77777777522556799********99766655.....777788876 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11   1.2e+02     187     240 ..     853     902 ..     840     904 .. 0.75
   2 !    6.1   0.1    0.0045       4.7     184     234 ..     892     938 ..     879     948 .. 0.84
   3 ?    1.9   0.2     0.084        88     265     292 ..     999    1026 ..     965    1047 .. 0.67
   4 ?    1.9   0.2     0.085        90     270     293 ..    1004    1027 ..     990    1062 .. 0.59
   5 ?   -1.6   0.0      0.98     1e+03     184     217 ..    1058    1092 ..    1047    1099 .. 0.81
   6 ?    2.2   0.0     0.067        71     187     218 ..    1103    1135 ..    1092    1146 .. 0.82
   7 !   11.0   0.0   0.00014      0.15     188     217 ..    1181    1210 ..    1172    1223 .. 0.85
   8 ?    4.0   0.0     0.019        20     177     219 ..    1254    1297 ..    1241    1309 .. 0.82
   9 ?    2.1   0.0      0.07        74     167     214 ..    1366    1414 ..    1359    1419 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslss 240
                 h   +   a+spdG  +  +sed +     + l d+++ r Lh    h  +  s 
  CDO71101.1 853 HKgRVHAVAYSPDGERIVSCSEDWL-----IMLWDARTGRQLHVLEGHSARVCSV 902
                 433788899*************955.....5666788888888888888775444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0045
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhd 234
                 +e hs  + + +fsp G  l  as d +vk +     d+++  CL  Wk h 
  CDO71101.1 892 LEGHSaRVCSVVFSPSGKELLSASDDLTVKVW-----DATTGACLVTWKRHT 938
                 56776589999*******************98.....678899******995 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.084
    Ge1_WD40  265 nnselklWscelWtClqtikfapsiess 292 
                  ++   k+Ws+++ +C++t   a+ + + 
  CDO71101.1  999 HDCTSKMWSVQSKSCIRTFTHAARVMTV 1026
                  5555678888888888887777765443 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.085
    Ge1_WD40  270 klWscelWtClqtikfapsiessl 293 
                  k+Ws+++ +C++t   a+ + +  
  CDO71101.1 1004 KMWSVQSKSCIRTFTHAARVMTVA 1027
                  666666666666665555543322 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.98
    Ge1_WD40  184 ieehs.liveaafspdGtalatasedGevkffqvy 217 
                  +++h+  i +  fspd   la  s d ++ ++ v 
  CDO71101.1 1058 LNHHAsWIWSLDFSPDDRILASGSWDHTMCLWDVA 1092
                  566644899999**************999999886 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.067
    Ge1_WD40  187 hs.liveaafspdGtalatasedGevkffqvyl 218 
                  h+ ++ +  fspdG  + t   d  v+ +   l
  CDO71101.1 1103 HAdQVLCVRFSPDGSHIVTGECDHSVRIWECDL 1135
                  44489999*******************998655 PP

  == domain 7  score: 11.0 bits;  conditional E-value: 0.00014
    Ge1_WD40  188 sliveaafspdGtalatasedGevkffqvy 217 
                  s +   +fsp+G+ +ata+ dG+v+ + v 
  CDO71101.1 1181 SGVRVVSFSPNGALIATAAWDGTVRIWDVA 1210
                  4677889********************996 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 0.019
    Ge1_WD40  177 ieegllkieehs.liveaafspdGtalatasedGevkffqvyle 219 
                  + ++l k+++h   + +++f+pd   l  +s dG ++++ v  +
  CDO71101.1 1254 AGKSLAKFTQHIgGVWTSIFTPDEQRLVSCSDDGSIRLWHVDNT 1297
                  45567788888658999**********************99654 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.07
    Ge1_WD40  167 ygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkff 214 
                  yg   l+ +++   +l +e+h+ ++ + afs d t     s+dG +  +
  CDO71101.1 1366 YGYPTLRLHDMLGNVLWLENHAsTVASVAFSRDSTRALSGSQDGRIFVY 1414
                  555556666666777888999659*************9******99766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.3e-10   6.6e-07      23     150 ..     297     420 ..     284     443 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 6.3e-10
      AAA_16  23 rp..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaea.s 117
                 rp  +l  +sG +G+GKs+l+++++ ++++d + fl +++   + +       +q++ ++++  ql++     + ++++++l ea++a p+++ga++ +
  CDO71101.1 297 RPenPLFWISGLAGTGKSTLAQTIA-HWCED-VGFLGATFFAARDG---ERsNVQLI-FSTVAHQLAA-----LCPEYQDALNEAVRANPDIHGALPsR 384
                 34448999*****************.9****.66655555555222...11157777.4356555554.....58889999999999999999999976 PP

      AAA_16 118 rllellkrllallsrder...plvlvlDdlqwadea 150
                 +l   + + l+ l+r++    p  +++D l+  +++
  CDO71101.1 385 QLQKFIVEPLRSLKRHDVafpPCAVIIDALDECKDE 420
                 6777777888888885548878*********77663 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   6.8e-09   7.2e-06       3     132 ..     303     451 ..     301     480 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 6.8e-09
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....-HCHHHCCCCTS--SSS-C...............CHHHHCCSCCCEE. CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.rsladllfsqlpepaapvse...............vwavllelperlL. 84 
                  ++ G aG GK+tL+q +a+ w e+  + g    +F  + +e+s  + +  ++a +l++ +pe +++ +e                           L 
  CDO71101.1 303 FWISGLAGTGKSTLAQTIAH-WCEDVGFLG--ATFFAARDGERSNVQLIfSTVAHQLAALCPEYQDALNEavranpdihgalpsrQ-----------Lq 387
                 69****************97.666666664..35555556666666555999****************997777666555555441...........34 PP

                 .....................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT  85 .....................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpral 132
                                       i+D+lDe++++        + + Ls  ++   l   ++++t+rp   
  CDO71101.1 388 kfiveplrslkrhdvafppcaVIIDALDECKDEEAV---SVILKALSLYVSD--LAPLKFVITSRPVPH 451
                 4455555555899999***************95444...4445555444444..777777888887644 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.7e-05     0.029      15      97 ..     876     959 ..     868     964 .. 0.91
   2 ?   -0.4   0.0       0.3   3.1e+02      41      94 ..     986    1038 ..     970    1058 .. 0.89
   3 ?   -0.7   0.0      0.38     4e+02      12      54 ..    1199    1241 ..    1175    1286 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
                   TEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSS.EEEEEE-SSEEEEEEE--TTSEEEEEEEE CS
  Cytochrom_D1  15 gkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwake.ivaevkiGlnarsvavSqddryvivgnYl 97 
                     + l d+ + ++l+vle++ a   s+vf++ g+ ++ ++ D +v++ D  +    v   +   + rsva S d+ y++ g+Y 
    CDO71101.1 876 WLIMLWDARTGRQLHVLEGHSARVCSVVFSPSGKELLSASDDLTVKVWDATTGAcLVTWKRHTRDVRSVAWSSDGVYAASGSYD 959
                   5678899999****************************************99997788889999*******************5 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
                    EE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEE CS
  Cytochrom_D1   41 rvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivg 94  
                    +vfasdg + + +g D + ++  +  k  +++         vavS+d r+v+ g
    CDO71101.1  986 VVFASDGDL-LSAGHDCTSKMWSVQSKSCIRTFTHAARVMTVAVSKDSRLVACG 1038
                    689999875.579*********999999***********************988 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.38
                    GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEE CS
  Cytochrom_D1   12 rdagkvalldgdskeilavletgyalHisrvfasdgRyvyvig 54  
                    + +g v++ d  + + +++le++  l +s   ++ g+++   g
    CDO71101.1 1199 AWDGTVRIWDVATGTRVKTLEGHEHLITSCTWSRSGKLLASTG 1241
                    3456777777777777777777777777777777666665544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     6e-06    0.0063      10     128 ..     305     443 ..     299     449 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsst..sskdllrellralglelka...................erlsseellealeq 84 
                 + G +GtGK+tl+++++++ +        +++++   f+ +  ++  + + +++ ++++l   + +                   +  +++ ++    +
  CDO71101.1 305 ISGLAGTGKSTLAQTIAHWCE--------DVGFLgatFFAARDGErsNVQLIFSTVAHQLAALCPEyqdalneavranpdihgalPSRQLQKFIVEPLR 395
                 88*****************97........5555544433333333446666666666666666666777777777779999977777777777777777 PP

      AAA_22  85 alrarav...ielliiDEaqhlrs.....eealeeLrsllnlsrkgvqliLv 128
                  l++++v   + ++iiD  +   +       +l+ L sl+   +++ +l +v
  CDO71101.1 396 SLKRHDVafpPCAVIIDALDEC-KdeeavSVILKAL-SLYV--SDLAPLKFV 443
                 7777777999999999999987.3322333333333.3333..555555555 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.21   2.2e+02     262     294 ..     857     889 ..     847     933 .. 0.54
   2 ?    0.0   0.0      0.19     2e+02     260     311 ..     897     950 ..     894     969 .. 0.78
   3 !    7.8   0.1   0.00085       0.9     258     338 ..    1019    1101 ..    1001    1135 .. 0.83
   4 ?    1.5   0.0     0.066        70     260     288 ..    1388    1416 ..    1385    1422 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.21
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitk 294
                 v ++a++pd ++++  +eD  ++L+d+ ++  +
  CDO71101.1 857 VHAVAYSPDGERIVSCSEDWLIMLWDARTGRQL 889
                 666777777777777777777777776544333 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.19
        Frtz 260 aqvislafnpdedkLllGceDssviLydeerkitklv.kaevv.Psliswhpds 311
                 a+v+s+ f+p+   Ll  + D +v ++d++++  +++ k + +    ++w +d+
  CDO71101.1 897 ARVCSVVFSPSGKELLSASDDLTVKVWDATTGACLVTwKRHTRdVRSVAWSSDG 950
                 79***************************9998887753333313456666665 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00085
        Frtz  258 lraqvislafnpdedkLllGceDssviLydeerk..itklvkaevvPsliswhpdsaillvasergelqifDlaLspiriqll 338 
                    a+v+++a+++d   +  Gc D+sv+L+++ ++  +  l + +     + + pd+ il  +s    + ++D+a ++  + ll
  CDO71101.1 1019 HAARVMTVAVSKDSRLVACGCDDTSVVLWNKATGerLHTLNHHASWIWSLDFSPDDRILASGSWDHTMCLWDVATATHLQTLL 1101
                  568999*******99999***********987651144455556666678999999999999999999999999988666555 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.066
        Frtz  260 aqvislafnpdedkLllGceDssviLyde 288 
                  + v+s+af+ d  + l G++D+ + +yd 
  CDO71101.1 1388 STVASVAFSRDSTRALSGSQDGRIFVYDF 1416
                  789************************96 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0003      0.32      73     175 ..     943    1051 ..     892    1108 .. 0.72
   2 ?    2.8   0.0     0.046        48     117     168 ..    1192    1246 ..    1174    1269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
                     XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXX...XXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
  Coatomer_WDAD   73 dfvwvssnrfavlessksvkifknfkekktksi..kleyqvdkifg...GalLgvksegsvsfYDweqgklvrridvkk.vknVvwsddgelva 160 
                     +++w+s + +a+  s  s +i+  + + +t ++  ++  +vd+++    G lL +  + +  ++ +++++ +r  +  + v  V +s+d  lva
     CDO71101.1  943 SVAWSSDGVYAASGSYDSKVILWPVASPQTATVftDHRAEVDQVVFasdGDLLSAGHDCTSKMWSVQSKSCIRTFTHAArVMTVAVSKDSRLVA 1036
                     67888888888888844444446665555555422667788898888********9999999*************98877************** PP

                     XXXXXXXXXXXXXXX CS
  Coatomer_WDAD  161 lvskdtvyilsynle 175 
                       ++dt ++l  +  
     CDO71101.1 1037 CGCDDTSVVLWNKAT 1051
                     **9999999877765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.046
                     XXXXXXXX.XX.XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  117 GalLgvks.egsvsfYDweqgklvrridvkk..vknVvwsddgelvalvskdtvy 168 
                     Gal+ +   +g+v ++D+++g+ v+ ++ ++  ++   ws +g+l+a + +++  
     CDO71101.1 1192 GALIATAAwDGTVRIWDVATGTRVKTLEGHEhlITSCTWSRSGKLLASTGDHDHS 1246
                     66766554266899**************87668**************99755433 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.5   1.6e+03       5      22 ..     143     160 ..     135     176 .. 0.63
   2 !    7.7   0.0    0.0042       4.5       3      24 ..     221     242 ..     219     277 .. 0.76
   3 ?    4.4   0.0     0.047        50      19      41 ..     352     374 ..     344     378 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.5
         LPP   5 LssqVsqLkskvdqlssd 22 
                  ++ V++  ++v++l+s+
  CDO71101.1 143 FNNRVQSVREDVEKLASQ 160
                 445555555555555554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0042
         LPP   3 deLssqVsqLkskvdqlssdvn 24 
                 d Ls+q+   +++++ql sd+n
  CDO71101.1 221 DGLSDQIGGVSDQINQLRSDAN 242
                 789*****************76 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.047
         LPP  19 lssdvnsakaaaqaakeEAaRAN 41 
                 ++ +++++  + q+a +EA RAN
  CDO71101.1 352 VAHQLAALCPEYQDALNEAVRAN 374
                 666777888899*********** PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   3.6e-05     0.038      92     160 ..      90     158 ..      80     181 .. 0.67
   2 ?   -1.0   0.0      0.83   8.8e+02      72     101 ..     351     380 ..     350     390 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.6e-05
  ALIX_LYPXL_bnd  92 sesDkivrqklqenkedlelLsgpeeeleaalpssssaaasesveeqir.klrsllekldelkaereqll 160
                     + sD+ +rq++ +nked+e+L+   ++l+a + s+ ++ + es+ e+++ +l +  +++++++++ e+l 
      CDO71101.1  90 QVSDGRTRQRMSSNKEDIEELTEYIAKLNAMITSALPP-DYESCPEKLKeRLLEFNNRVQSVREDVEKLA 158
                     569********************999999998865444.2233333333233333333333333333332 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.83
  ALIX_LYPXL_bnd  72 eltaelraelqkyreileeAsesDkivrqk 101
                     +++++l a +++y+ +l+eA++++ +++ +
      CDO71101.1 351 TVAHQLAALCPEYQDALNEAVRANPDIHGA 380
                     6778999999*************9988765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-05     0.016     118     144 ..     304     330 ..     291     334 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
   Parvo_NS1 118 wfyGpantGktnlaeaIakavplygcv 144
                 w+ G a tGk+ la++Ia+++ ++g +
  CDO71101.1 304 WISGLAGTGKSTLAQTIAHWCEDVGFL 330
                 999*********************987 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.055        58       3     110 ..     941    1050 ..     939    1063 .. 0.84
   2 ?    5.4   0.0    0.0095        10       3      58 ..    1065    1120 ..    1063    1136 .. 0.87
   3 ?    0.2   0.0      0.35   3.7e+02       6      60 ..    1186    1240 ..    1182    1249 .. 0.84
   4 ?   -2.5   0.0       2.3   2.5e+03      16      72 ..    1239    1296 ..    1227    1299 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.055
   WD40_like    3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevenekieedistvkviddk..lli 97  
                  + s+  s +g + + G+ d k+ +  + s ++ +++++ +  v  v + +d  +l +  D t  +  ++ +  +++      + tv v +d   ++ 
  CDO71101.1  941 VRSVAWSSDGVYAASGSYDSKVILWPVASPQTATVFTDHRAEVDQVVFASDGDLLSAGHDCTSKMWSVQSKSCIRTFTHAARVMTVAVSKDSrlVAC 1037
                  66899999*****************************************************999999999999999999999999999888522556 PP

   WD40_like   98 GtnkGsiyvfskd 110 
                  G +  s+ +++k 
  CDO71101.1 1038 GCDDTSVVLWNKA 1050
                  7777777777765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0095
   WD40_like    3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv 58  
                  i+s+d+s++  +++ G+ d+++ + ++ + +  + + +  d v+ v++  d   +v
  CDO71101.1 1065 IWSLDFSPDDRILASGSWDHTMCLWDVATATHLQTLLGHADQVLCVRFSPDGSHIV 1120
                  89******************************************999976664443 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.35
   WD40_like    6 idiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvt 60  
                  + +s++g li+  + d ++++ ++ +++ v  +e+ e  +  +      ++l  t
  CDO71101.1 1186 VSFSPNGALIATAAWDGTVRIWDVATGTRVKTLEGHEHLITSCTWSRSGKLLAST 1240
                  78999**************************999999888888776666666666 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.3
   WD40_like   16 lyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllen 72  
                  + G +d+ + + ++  ++s   +++    v  + +  d+  ++ ++ DG i l  + n
  CDO71101.1 1239 STGDHDHSINIWNVAAGKSLAKFTQHIGGVWTSIFTPDEqRLVSCSDDGSIRLWHVDN 1296
                  357788899999999999999999999999999998777356669999*997666555 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.034        36      10      24 ..     856     870 ..     845     874 .. 0.79
   2 ?   -0.1   0.1      0.89   9.4e+02      15      22 ..     945     952 ..     937     965 .. 0.63
   3 ?    2.7   0.0      0.12   1.3e+02      15      24 ..    1111    1120 ..    1109    1120 .. 0.83
   4 ?   -3.1   0.0       8.2   8.7e+03      15      21 ..    1187    1193 ..    1187    1196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.034
                 .EEEEEE-TTSSEEE CS
        PD40  10 negaPsfSPDGkrla 24 
                   +a ++SPDG r++
  CDO71101.1 856 RVHAVAYSPDGERIV 870
                 667889*******97 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.89
                 EE-TTSSE CS
        PD40  15 sfSPDGkr 22 
                 ++S DG +
  CDO71101.1 945 AWSSDGVY 952
                 56666643 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.12
                  EE-TTSSEEE CS
        PD40   15 sfSPDGkrla 24  
                  +fSPDG+ ++
  CDO71101.1 1111 RFSPDGSHIV 1120
                  8*****9885 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 8.2
                  EE-TTSS CS
        PD40   15 sfSPDGk 21  
                  sfSP+G 
  CDO71101.1 1187 SFSPNGA 1193
                  7****95 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.016        17     232     261 ..     910     940 ..     876     969 .. 0.77
   2 ?   -0.2   0.1      0.28   2.9e+02     239     259 ..    1000    1020 ..     993    1037 .. 0.71
   3 ?    3.5   0.7     0.022        23     202     255 ..    1047    1099 ..    1041    1113 .. 0.89
   4 ?    9.5   0.1   0.00032      0.34     219     256 ..    1186    1218 ..    1168    1249 .. 0.81
   5 ?   -1.9   0.0       0.9   9.5e+02     226     252 ..    1273    1299 ..    1266    1302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.016
                 EEEEEETT-EEEEEETTTTEEEEE.EE--.- CS
      Nup160 232 ylfalsrdgkLrvWnlltgkclat.idllrd 261
                  l+++s d +++vW+ +tg cl t +  +rd
  CDO71101.1 910 ELLSASDDLTVKVWDATTGACLVTwKRHTRD 940
                 478999****************995555543 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.28
                  T-EEEEEETTTTEEEEEEE-- CS
      Nup160  239 dgkLrvWnlltgkclatidll 259 
                  d + ++W++++++c++t++  
  CDO71101.1 1000 DCTSKMWSVQSKSCIRTFTHA 1020
                  66779************7665 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.022
                  .TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160  202 lladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclat 255 
                  +++++ +r +  + ++s   + +++  ++ +l++ s d+++ +W+++t+++l t
  CDO71101.1 1047 WNKATGERLHTLNHHASWIWSLDFSP-DDRILASGSWDHTMCLWDVATATHLQT 1099
                  77888888888888888888999998.9**********************9987 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00032
                  EEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160  219 ldvavavveigqtylfalsrdgkLrvWnlltgkclati 256 
                  +++++     + ++++++  dg++r+W+++tg+++ t 
  CDO71101.1 1186 VSFSP-----NGALIATAAWDGTVRIWDVATGTRVKTL 1218
                  33333.....7789*******************99984 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.9
                  ...TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160  226 veigqtylfalsrdgkLrvWnlltgkc 252 
                   + +++ l++ s dg +r+W +++ k+
  CDO71101.1 1273 FTPDEQRLVSCSDDGSIRLWHVDNTKQ 1299
                  44488899999***********99875 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.89   9.4e+02      31      59 ..     925     954 ..     899     976 .. 0.65
   2 ?   -2.9   0.0       3.1   3.3e+03       2      27 ..     985    1010 ..     984    1058 .. 0.70
   3 ?   -0.7   0.0      0.69   7.3e+02     231     260 ..    1064    1093 ..    1054    1115 .. 0.84
   4 ?    7.9   0.0    0.0016       1.7     227     260 ..    1178    1211 ..    1168    1223 .. 0.81
   5 ?    0.3   0.0      0.34   3.6e+02     221     265 ..    1257    1301 ..    1238    1306 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.89
      Nbas_N  31 svigkcqvp.kdpnpqwrrvawshdctlla 59 
                 +  g c v  k    + r vaws d    a
  CDO71101.1 925 ATTGACLVTwKRHTRDVRSVAWSSDGVYAA 954
                 346788876355667788999999976555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
      Nbas_N    2 hlvlasngkllavvqdqcveirsakd 27  
                  ++v+as+g ll++ +d   ++ s++ 
  CDO71101.1  985 QVVFASDGDLLSAGHDCTSKMWSVQS 1010
                  57888888888888877666666554 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.69
      Nbas_N  231 gvfkmslspdgtllavihfsgklsiwdips 260 
                   ++ + +spd  +la   +   +++wd+ +
  CDO71101.1 1064 WIWSLDFSPDDRILASGSWDHTMCLWDVAT 1093
                  5788899********************976 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0016
      Nbas_N  227 eekdgvfkmslspdgtllavihfsgklsiwdips 260 
                  +   gv  +s+sp+g+l+a+  + g + iwd+ +
  CDO71101.1 1178 HHASGVRVVSFSPNGALIATAAWDGTVRIWDVAT 1211
                  345799999**********************975 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.34
      Nbas_N  221 lysrkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqrg 265 
                    ++ ++   gv+   ++pd  +l      g++ +w++   kq g
  CDO71101.1 1257 SLAKFTQHIGGVWTSIFTPDEQRLVSCSDDGSIRLWHVDNTKQSG 1301
                  5566677778999999***********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.22u 0.41s 00:00:01.63 Elapsed: 00:00:00.60
# Mc/sec: 7854.85
//
Query:       CDO71102.1  [L=543]
Description: hypothetical protein BN946_scf184844.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-89  300.2   0.0    1.4e-89  299.8   0.0    1.2  1  Malic_M   Malic enzyme, NAD binding domain
    7.9e-64  214.8   0.0    1.2e-63  214.2   0.0    1.3  1  malic     Malic enzyme, N-terminal domain


Domain annotation for each model (and alignments):
>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.8   0.0   1.6e-93   1.4e-89       1     257 [.     256     513 ..     256     514 .. 0.97

  Alignments for each domain:
  == domain 1  score: 299.8 bits;  conditional E-value: 1.6e-93
                 THHHHHHHHHHHHHHHHHH-S-....GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-S---TTTGGGSBS--SS--S CS
     Malic_M   1 iqgTaavalagllaalkitgkk....lseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedrekleeekkpfakkkeelkea 95 
                 iqgT+av+l+g ++a+k+++      l++++i++lGaGsag+G+a q+++ ++ +Gls+eea+++iylvD++GL++++r  l+e+kk f +k+ +    
  CDO71102.1 256 IQGTGAVVLSGFFNAAKLSSAAsgrpLTDHRILFLGAGSAGVGVAMQLMSFFKLQGLSDEEARDRIYLVDSQGLIFDGRGPLAEHKKYFSRKDYNGPP- 353
                 9*************999765433444*****************************************************************9999884. PP

                 ....SHHHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTH CS
     Malic_M  96 kdkltLeevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayif 194
                   +++L+++++ v+pt+l+Gls+++gaf++++v++ma+ ++rPi++plSNP + +E++++++++w++g++l+asGsPf++ ++ng+ +++gQ+NN+yif
  CDO71102.1 354 --MKDLTDIIEYVQPTALLGLSTIKGAFNQSVVETMAALNPRPILFPLSNPVRLSECEFHEAVEWSQGRVLFASGSPFPEEQYNGRVLYPGQGNNMYIF 450
                 ..58*********************************************************************************************** PP

                 HHHHHHHHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 195 PglglgvivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 Pglglg+i+ara+r+td+m++a++  la+ ++++e + + l+P++++ire+s+++a++v++aa
  CDO71102.1 451 PGLGLGAILARASRVTDSMVEASSLGLADSLTADERAADLLYPRIERIREISAQIALSVIRAA 513
                 ************************************************************998 PP

>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.0   1.4e-67   1.2e-63       6     182 .]      70     246 ..      65     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 1.4e-67
                 CCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS..SS..EEEEE-SSSBTTTBS-GHHHHHHHHHHHHHHHHHH CS
       malic   6 tlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlp.eedvkvivvtdgeriLGlGdlGvagvgimvGKlaLytala 103
                  +fy+l+  ++ e+ p++YtPtvg+ac +ys+++r+++gl++sikdk++i +il+n+p  e+ ++ vvtdg+riLGlGdlGv+g++i++GKl+Ly+a a
  CDO71102.1  70 AMFYRLCLANMAEFTPLIYTPTVGDACLQYSHIFRRPEGLFISIKDKGNIGKILRNWPrIEEARISVVTDGSRILGLGDLGVNGMPIAIGKLSLYVAGA 168
                 689*******************************************************7799************************************* PP

                 S-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 104 gidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 gi+Pe+++p++ld gt++++ ledplYlGlr++Rv  ee  ef++ef++ ++++f pk liqfEDf++++af  le +r
  CDO71102.1 169 GIRPESTVPICLDLGTDTQRYLEDPLYLGLRQRRVPMEEAAEFMEEFMREMAATF-PKLLIQFEDFSTDKAFAYLEAFR 246
                 *******************************************************.9*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 3263.23
//
Query:       CDO71103.1  [L=207]
Description: hypothetical protein BN946_scf184844.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1476.67
//
Query:       CDO71104.1  [L=305]
Description: hypothetical protein BN946_scf184844.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.9    6.1   4.5        3.7    5.7   4.5    1.1  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.5   0.00021       3.7       4     126 ..      29     161 ..      26     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00021
     DUF2070   4 lskyifrlPswkvsllliillalligllaflssk............lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllai 90 
                 l  +++r+P+ +v+l +++lla+ +++     ++            +  +l++   al++++l+  +  +++ ++++   + l ++  +i++++s l +
  CDO71104.1  29 LKEIVIRIPENRVALGAVALLAYEYAITL--GQEvrfiwmhkktgaVWLFLVVRYHALLSMVLLESISYSYSPIPDHVPQAALQVAQYIIWAAFSGLRA 125
                 66789999999888888887777655544..444558*****85544444444445***************999999999*****************99 PP

     DUF2070  91 llsall.qalvllalvlslalvfalrllvlvavsdes 126
                 l+   + + l +  ++l+ a+ fa++l v+  ++ + 
  CDO71104.1 126 LALSGMnWPLAPVVFLLA-AAPFAVNLWVIGGIGTYA 161
                 998888877777777777.889999999987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2137.46
//
Query:       CDO71105.1  [L=631]
Description: hypothetical protein BN946_scf184844.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   14.0   2.4       0.77    8.4   0.4    2.7  3  Med15     ARC105 or Med15 subunit of Mediator complex non-fun
      0.065   12.1   0.3      0.099   11.5   0.3    1.4  1  Apt1      Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Med15  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0     0.089   7.9e+02     738     756 ..      67      85 ..      62      87 .. 0.90
   2 ?    8.4   0.4   8.5e-05      0.77     440     502 ..     138     201 ..     129     213 .. 0.82
   3 ?    4.1   0.1    0.0016        15     506     556 ..     502     552 ..     435     559 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.089
       Med15 738 lskLPglfslshlLdtWee 756
                 l +LP++f +  + +tW++
  CDO71105.1  67 LAHLPKKFRVRTFVNTWAR 85 
                 679**************86 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 8.5e-05
       Med15 440 slrqspqpsvpspqgPgsqp.pqsvsggmiPsP.ali.pspspqmsqspasqrtiqqdspggslnt 502
                  +++s + s ps ++P   + ++ + g+++ sP a++ p++++q  ++ ++++t++q sp++s  t
  CDO71105.1 138 AMKSSASTS-PS-GHPHDVEeGEIEEGEVVESPvAFVkPKKKKQKAKKEKESQTVRQRSPSASNAT 201
                 588888888.99.78876554999**********997578899999999************98644 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0016
       Med15 506 savnSPlnpqeeqLYrekyrqltkYiePlkrmiakiendeddikdlskmkk 556
                 s++ S + ++e      k ++l+ Yi   k+ +aki+  + + ++ s m+ 
  CDO71105.1 502 SSMSSAVPASEAVQLLAKKKRLEEYIAMTKNLLAKISAAKSKAEKDSLMRI 552
                 4788888888877778899*******************9888888887765 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   1.1e-05     0.099     280     370 ..      92     201 ..      91     327 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
        Apt1 280 kiqLeeevgkklfeYiFPkrdsdaqea................s..mvk.essseeddesdeesessssssssssssassssssssrssslelrlk... 356
                 +i+++ ++gk l+eY  P + + a+ +                +   +k +    +++ s + ++ ++ + ++ +  +s  +  + ++++++ +++   
  CDO71105.1  92 RIEVDAKLGKALVEYASPSEAQAAFASsrlrgegkehirvywyQgpAMKsS---ASTSPSGHPHDVEEGEIEEGEVVESPVAFVKPKKKKQKAKKEkes 187
                 799**********************99666666655444433313322212...222222222222222222222222222222222222222211000 PP

        Apt1 357 ptsstssssssess 370
                 +t +++s s+s+ +
  CDO71105.1 188 QTVRQRSPSASNAT 201
                 11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1197  (0.0667633); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 3866.16
//
Query:       CDO71106.1  [L=677]
Description: hypothetical protein BN946_scf184844.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-05   23.4   0.0    6.4e-05   22.6   0.0    1.4  1  Peptidase_S41  Peptidase family S41


Domain annotation for each model (and alignments):
>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.6e-09   6.4e-05       1      48 [.     403     454 ..     403     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.6e-09
                    EEEEEEES-BCC....THHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHH CS
  Peptidase_S41   1 kiGyiripsfse....ktkeelakalkelkkknvkglilDlRnNgGGlldea 48 
                    k+G++ + sfs+    + +  l   l++lkk+++ +li+D++nNgGG +  a
     CDO71106.1 403 KTGVLALGSFSAgsldTLNTALLTGLQNLKKQGATKLIVDVSNNGGGFICTA 454
                    6899999999667888888999999**********************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4807.75
//
Query:       CDO71107.1  [L=317]
Description: hypothetical protein BN946_scf184844.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.0   0.6         28    4.5   0.0    3.2  3  FixP_N    N-terminal domain of cytochrome oxidase-cbb3, FixP
       0.14   11.4   0.0       0.18   11.0   0.0    1.1  1  7tm_7     7tm Chemosensory receptor


Domain annotation for each model (and alignments):
>> FixP_N  N-terminal domain of cytochrome oxidase-cbb3, FixP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1    0.0077        69      16      35 ..      35      54 ..      33      55 .. 0.84
   2 ?    4.5   0.0    0.0031        28      13      29 ..     145     161 ..     144     162 .. 0.88
   3 ?    1.3   0.0     0.033   2.9e+02       5      20 ..     222     237 ..     219     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0077
      FixP_N 16 nnplPrWWlylFyativfav 35
                n  lP  +l++F+a ++f +
  CDO71107.1 35 NSSLPFSFLITFIAVFLFFL 54
                67899999999999999965 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0031
      FixP_N  13 rElnnplPrWWlylFya 29 
                 +E + p+PrW + +F+a
  CDO71107.1 145 HEADSPPPRWGASTFLA 161
                 5999******9999975 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.033
      FixP_N   5 tgHeWDGIrElnnplP 20 
                 tgH+  +  El+n+ P
  CDO71107.1 222 TGHQNSEVVELDNKAP 237
                 8999999******999 PP

>> 7tm_7  7tm Chemosensory receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     2e-05      0.18     159     206 ..      38      86 ..      23     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2e-05
       7tm_7 159 yllpylvlqlllllyfllllliy.ellrllnerLkqlvrelrgrseseq 206
                 + +++l+++++++l+fl ++l + ++ r+l+++L  +v++++ rs s+ 
  CDO71107.1  38 LPFSFLITFIAVFLFFLGCGLGSrRVTRQLRRNLGLQVAQVEARSASRL 86 
                 4467779*********************************998876553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2501.52
//
Query:       CDO71108.1  [L=590]
Description: hypothetical protein BN946_scf184844.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-24   86.1   0.0    7.9e-21   74.9   0.0    2.1  2  Amino_oxidase   Flavin containing amine oxidoreductase
    2.7e-11   43.5   0.0    6.9e-11   42.2   0.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.4e-07   31.5   0.1    6.9e-06   25.9   0.1    2.3  2  DAO             FAD dependent oxidoreductase
    9.4e-06   25.7   0.5    0.00041   20.4   0.0    2.7  3  NAD_binding_9   FAD-NAD(P)-binding
     0.0002   20.7   0.2       0.05   12.8   0.0    2.9  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0012   17.7   0.0     0.0017   17.2   0.0    1.2  1  MCRA            MCRA family
      0.007   15.1   0.0       0.49    9.0   0.0    2.2  2  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.019   13.8   0.0      0.029   13.2   0.0    1.2  1  Trp_halogenase  Tryptophan halogenase
       0.02   14.3   0.0      0.031   13.6   0.0    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.024   15.2   0.0       0.13   12.8   0.0    2.2  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.041   13.0   0.1        2.9    6.9   0.0    2.1  2  GIDA            Glucose inhibited division protein A
      0.076   12.2   0.1       0.13   11.5   0.1    1.2  1  Thi4            Thi4 family
      0.099   11.9   0.0         12    5.0   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   5.7e-24   7.9e-21       1     275 [.      14     334 ..      14     354 .. 0.84
   2 !    9.2   0.0   0.00047      0.65     286     448 ..     412     587 ..     389     589 .. 0.74

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 5.7e-24
                    HHHHHHHHHH.....HHTTEEEEEEESSSSSBTTS-EEEET.........TEEEESS--EEETTTHHHHHHHHHTTCCCCEE...EESCCGCEEEE CS
  Amino_oxidase   1 laGLaaArqL.....lsaGfdVtvlEardrvGGRirtvrsd.........GylielGamwftgagnpllellkelgledsls...lpdpgapkrvl 79 
                    l+GLa A +L     +s G ++t++E ++r+GG++++++           ++l+e G+ ++++a  ++le+++ l+l  sl+      p+a++r+l
     CDO71108.1  14 LSGLASAFHLsrrfpASSGTRITLIEKSNRLGGWVQSEKARisdrygrqaDVLLESGPRTLRPASKAILEIIHLLNLAPSLVtvpRTAPAARNRFL 109
                    79********99999999**********************99999988877*****************************9984444444999999 PP

                    ETTEECCTTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Amino_oxidase  80 skggrefpgdlspvpaewealleqgalsaellsleeklrlgleall.qktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasg 174
                    +  g++    l  +p  +++ll           l + l  +l a + + + ++l+  +++ +es+ ++  r++g  +  + +          +++g
     CDO71108.1 110 HIPGTKG---LVTIPTSLASLLV--------SPLAKLLVPALFADFrRRNGRVLKSSQPN-DESVDAFLTRHFGT-DFAQTFGSA-------LVHG 185
                    9999966...3444445555555........12223333333333322233444555555.55555666666666.688899997.......**** PP

                    CHTSTTTTCBHHHHTCCCCHHHHHTSCCCEE............................................TTHTHHHHHHHHH...TTTTE CS
  Amino_oxidase 175 lfagdpselsaklalpllwelegfggslllp............................................rgGlsqlpealae...elrgl 223
                    ++a d ++ls ++++ + ++le++g++ ++                                             r+G+++l  a+a+   ++ ++
     CDO71108.1 186 IYATDSRLLSVRATFSAMCRLEENGKGSVVRgalnemvsswrihrkghenatasppvydlgevsslmkgisvysfRDGMETLTGAMASylrQRENV 281
                    ************************98877668**********************************************************999999 PP

                    EEETSEEEEEEEE..ETTCEEEEETTSTEEEESEEEE-S-HHHHHSSEEESCCS CS
  Amino_oxidase 224 dirlntrVkeikr..egdgvtvtledgevveaDaVvvTvplgvlkailfsPplp 275
                    +i  +  V  ++r   gd   v +e+g++++  + vv+vpl+vl+  l+s plp
     CDO71108.1 282 TIVQGDGVATLARtqTGDRFQVATESGKEIQSSHLVVAVPLPVLH-GLLSRPLP 334
                    *************988888**************************.66665554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00047
                    EEEEEEEEEEEESSGGSGCSTSE.CE...........CECCCEEETTTEEEEECC.........ECCCSTTTEEEEEEEEECHHHHHHHTTS-HHH CS
  Amino_oxidase 286 gfgsvnkvilefdrkfwednalg.qg...........vlvseltttlgeafissd.........fpsrappgkglvllvyvggdaaneleslsdee 360
                    ++ sv++v l f+    + +  + +g            + ++++ +lg+ f+ss           ++r+p  +++  +v++gg +++   ++   +
     CDO71108.1 412 PSSSVTVVNLVFPPSDSPLHP-DgFGyliprpaegypSPPGSTLGMLGTVFDSSAlggqdvsicADHRSPKFTKV--TVMLGGPYGPPSPDPHSPD 504
                    566777777777766633222.33444555666667777777888888888887788888888678888888877..9999*******999999** PP

                    HHHHHHHHHHHHHT..GTSSTCSEEEEEECCTETTTSSSEEE.BTTH....HHHHHHHHHCHHCSTTEEE.SGGGCTTTTTS.HHHHHHHHHHHH CS
  Amino_oxidase 361 lvqavlrdLrklfg..eevpepkatlvtrWhtdplargsysyvsvgp....ghedydplakpegdprlffAGehtsreypgt.vegAilSGlraA 448
                     +  +l  L++ +g  e  pep  + +++ h d+++        +++     + ++++  k++   +  + G+++     g+ v ++i+SG+raA
     CDO71108.1 505 FLPTLLATLQRHLGhdEPLPEPCLVRIRQHH-DCIP-------TPTVghieRMAELRAAVKEKWGENAAIIGASVD----GVsVGDCIESGRRAA 587
                    **************99999999999999998.****.......6666222234444444444555699999***77....99************9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     5e-14   6.9e-11       1      56 [.       9      78 ..       9      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 5e-14
                   EE--SHHHHHHHHHHHCC.....TEEEEEE-SSSSSSGGG-EECE......TT...CEECTS---EEETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.....gfdvlllekrdrlGGraasyev......pg...vrvdygahifhgsg 56
                   IvG+GlsGl+ A +L+++     g +++l+ek++rlGG+++s++       +    v ++ g++++++ +
     CDO71108.1  9 IVGGGLSGLASAFHLSRRfpassGTRITLIEKSNRLGGWVQSEKArisdryGRqadVLLESGPRTLRPAS 78
                   9***************977677899******************777776651156799999999998854 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1     5e-09   6.9e-06       2      35 ..       7      46 ..       6      61 .. 0.85
   2 ?    3.3   0.0     0.038        52     148     229 ..     267     343 ..     204     393 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5e-09
                EEEECTSHHHHHHHHHHHHT.....T..EEEEESSSSTTSS CS
         DAO  2 vviiGGGiiGlstAyeLarr.....g..Vtllekgdiagsg 35
                v i+GGG  Gl+ A++L+rr     g  +tl+ek++++g g
  CDO71108.1  7 VTIVGGGLSGLASAFHLSRRfpassGtrITLIEKSNRLG-G 46
                89****************99865444*********9988.2 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHTT.-EEEESECEEEEEEEE.TCEEEEEEECT.EEE.EEEEEEEE--GGGHHHHHTTCTT.TSEEEEEEEEEEEEEE CS
         DAO 148 ltaalaraaealG.veilegtevtgleeed.gkvwgverttp.gen.daadavVnaaGawsdllgllkel.dlpispvrgqvlvlkp 229
                 lt a+a+ ++++  v+i++g  v  l +++ g+  +v  +t+ g + ++  ++V+a  + +  l   + l  +p  p+ ++++ + p
  CDO71108.1 267 LTGAMASYLRQREnVTIVQGDGVATLARTQtGDRFQV--ATEsGKEiQS-SHLVVAVPLPV--L---HGLlSRP-LPIISSSVPT-P 343
                 78899999877755***********977544666777..6766887344.66999985442..4...2222344.6666666666.4 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     3e-07   0.00041       2      44 ..       9      51 ..       8      56 .. 0.86
   2 ?   -2.9   0.0       4.4   6.1e+03      70     111 ..     142     186 ..     128     217 .. 0.61
   3 ?    2.5   0.1     0.093   1.3e+02     112     153 ..     276     320 ..     264     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3e-07
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrt 44
                   ivG+G +Gla + +L +r + +s ++itl+++s+  g g+v ++
     CDO71108.1  9 IVGGGLSGLASAFHLSRRFPASSGTRITLIEKSNRlG-GWVQSE 51
                   9*****************988999********76636.877655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.4
  NAD_binding_9  70 aeWlrerga....leeaeeldpddfvpRalyGrYlrdlfeellarl 111
                    a++ r++g      +  ++ + d+f++R +  ++ + + ++l+   
     CDO71108.1 142 ADFRRRNGRvlksSQ-PNDESVDAFLTRHFGTDFAQTFGSALVHGI 186
                    555555555543211.234456677777777777777777766655 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.093
  NAD_binding_9 112 pegvtvevhra.evvdlee..radgqavlladgaslaadaVvLAl 153
                    +++ +v+++++  v  l++  ++d+++v +++g++++  ++v+A+
     CDO71108.1 276 RQRENVTIVQGdGVATLARtqTGDRFQVATESGKEIQSSHLVVAV 320
                    444456666552444455411556679**************9996 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.6e-05      0.05       2      35 ..       6      43 ..       5      85 .. 0.79
   2 ?    3.7   0.0     0.022        30     187     235 ..     269     320 ..     255     322 .. 0.80
   3 ?   -0.1   0.0      0.31   4.3e+02     126     157 ..     546     576 ..     534     582 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
                 SEEEE--SHHHHHHHHHHHH.....HTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.....agakvtlvelegtc 35
                 +v ++GgG  Gla a +l++     +g ++tl+e + + 
   CDO71108.1  6 SVTIVGGGLSGLASAFHLSRrfpasSGTRITLIE-KSNR 43
                 6889999999999999999999987799999994.3333 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.022
                  HHHHHHHHHT.TEEEEESCEEEEEEETTE..EEEEEETTSCEEEESEEEE-S CS
                  xxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealeke.Gvevklgtsvkeidgnge..klevvledgeeidadlvvvav 235
                   a++ +l+++ +v+++ g  v ++ + ++  + +v +e+g+ei+ + +vvav
   CDO71108.1 269 GAMASYLRQReNVTIVQGDGVATLARTQTgdRFQVATESGKEIQSSHLVVAV 320
                  444555555559*********9999888876777***************997 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.31
                  CCSECHHHHHHCCSS-TSEEEEES-SHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 126 lvrtldsaealklkllpkrivvvGgGyiGvEl 157
                    r  +   a+k+k+ + +++++G+++ Gv +
   CDO71108.1 546 IERMAELRAAVKEKWGE-NAAIIGASVDGVSV 576
                  44444444555555555.9*******999865 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0017       5      48 ..       8      52 ..       5      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                EEE--SHHHHHHHHHHHHTT.---GGGEEEE-SS----------- CS
        MCRA  5 ylvGsGiasLaaAvyLirda.kvpgenihileelkvaggsldgag 48
                 +vG+G+++La+A++L r     +g++i+++e+++ +gg +++++
  CDO71108.1  8 TIVGGGLSGLASAFHLSRRFpASSGTRITLIEKSNRLGGWVQSEK 52
                69**************99852678**************9988764 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00036      0.49       3      36 ..       7      45 ..       5      51 .. 0.90
   2 ?    3.8   0.0     0.014        20     115     161 ..     271     319 ..     253     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00036
                 EEEE--SHHHHHHHHHH.....HHTT--EEEE-SSSSS- CS
  HI0933_like  3 viviGgGaAGlmaAisa.....akrgkrVlllekakklg 36
                 v ++GgG +Gl  A ++     a+ g r++l+ek ++lg
   CDO71108.1  7 VTIVGGGLSGLASAFHLsrrfpASSGTRITLIEKSNRLG 45
                 89**************977777889***********998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.014
                  HHHHHHH.HT-EEE-S--EEEEECE.TTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 115 llkelke.agvklrletevksveke.edgkfrvktkseeeleadklvlA 161
                  + + l++ ++v++     v++++++ ++ +f+v+t+s++e+++++lv+A
   CDO71108.1 271 MASYLRQrENVTIVQGDGVATLARTqTGDRFQVATESGKEIQSSHLVVA 319
                  555554427899999999999865515568******************9 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.1e-05     0.029       2      34 ..       7      41 ..       6      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
                    EEEE--SHHHHHHHHHHHHHTTTS..SEEEEEE-S CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgk..levtlvese 34
                    ++ivGGG +G  +A +l++ +  +  +++tl+e++
      CDO71108.1  7 VTIVGGGLSGLASAFHLSRRFPASsgTRITLIEKS 41
                    89*******************98889*******86 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-05     0.031       2      38 ..       7      48 ..       6      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAar.....aGakvlLveergvlGGll 38
                  v +vGGg++G+a A    r     +G +  L+e++++lGG +
    CDO71108.1  7 VTIVGGGLSGLASAFHLSRrfpasSGTRITLIEKSNRLGGWV 48
                  89*************9866333337***************76 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.3e-05      0.13       1      48 [.       6      58 ..       6      86 .. 0.81
   2 ?   -1.2   0.0       2.3   3.2e+03      42      72 ..     267     298 ..     251     308 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.3e-05
                EEEEECSSHHHHHHHHHH.....HHTTSEEEEEESSSSSSTTSSHHHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgal.....aelgkkVtvversdkllrllDeeaskilqe 48
                +v++vGgG++gl  A  l     a  g ++t++e s++l      e ++i  +
  CDO71108.1  6 SVTIVGGGLSGLASAFHLsrrfpASSGTRITLIEKSNRLGGWVQSEKARISDR 58
                589************999887777788***********997666665555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHT.TEEEECSEEEEEEEEETTS CS
   Pyr_redox  42 askilqeklekn.gievllntkveeiegsedg 72 
                 +  +++ +l+++ +++++ +  v+ +  ++ g
  CDO71108.1 267 LTGAMASYLRQReNVTIVQGDGVATLARTQTG 298
                 55667888877778999988888877766655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0021       2.9       2      28 ..       7      38 ..       6      54 .. 0.72
   2 ?    4.0   0.0     0.016        22      97     147 ..     267     319 ..     251     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
                EEEE-SSHHHHHHHHHHHH.....TT--EEEE CS
        GIDA  2 viViGgGhAGceAAlaaar.....lGakvlLi 28
                v+++GgG++G++ A++++r     +G +++Li
  CDO71108.1  7 VTIVGGGLSGLASAFHLSRrfpasSGTRITLI 38
                89*************99772222246666666 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.016
                 HHHHHHHHHHTSTTEEEEES-EEEEEECT..TEEEEEEETTS-EEEECEEEE- CS
        GIDA  97 yskevteklenepnleiieeeveelivee..kkvkgvvtedgetikakavvia 147
                    ++  +l++ +n++i+++     + ++  +    v te+g++i++++ v+a
  CDO71108.1 267 LTGAMASYLRQRENVTIVQGDGVATLARTqtGDRFQVATESGKEIQSSHLVVA 319
                 567899*************98655545443566777************99998 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.2e-05      0.13      20      55 ..       7      46 ..       5      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.2e-05
                EEEE--SHHHHHHHHHHHHC.T...TS-EEEEESSSS--T CS
        Thi4 20 vvivGaGssGLtaayylakk.p...dlkvailersvspGG 55
                v ivG+G sGL++a+ l+++ p   + +++++e+s  +GG
  CDO71108.1  7 VTIVGGGLSGLASAFHLSRRfPassGTRITLIEKSNRLGG 46
                89*****************986555799******999998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.012        17     167     211 ..       7      56 ..       4      76 .. 0.80
   2 ?    5.0   0.0    0.0087        12      82     131 ..     270     319 ..     214     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
  Pyr_redox_3 167 vvViGgknSavDaAlelvrk.....gaeVtvvtrgseiekeesdpsyslk 211
                  v+++Gg+ S+   A++l r+     g ++t++ +++ +  + ++ +++++
   CDO71108.1   7 VTIVGGGLSGLASAFHLSRRfpassGTRITLIEKSNRLGGWVQSEKARIS 56 
                  78999999999999999887777778889998888888888777777766 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0087
  Pyr_redox_3  82 ealeYlrevaksfelpiklfeeVesvkk..edegfevetske.tyeAkkviiA 131
                   +++Ylr   +++++ i +   V ++++  +++ f+v t+++ +++++++++A
   CDO71108.1 270 AMASYLR---QRENVTIVQGDGVATLARtqTGDRFQVATESGkEIQSSHLVVA 319
                  4777777...478999999999**9999433566*****99879********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4414.67
//
Query:       CDO71109.1  [L=399]
Description: hypothetical protein BN946_scf184844.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-45  155.1   0.0    2.8e-45  154.5   0.0    1.3  1  DNA_primase_S  DNA primase small subunit
  ------ inclusion threshold ------
       0.17   11.7   0.0       0.36   10.7   0.0    1.5  2  DUF2448        Protein of unknown function C-terminus (DUF244


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   3.2e-49   2.8e-45       1     176 [.     109     326 ..     109     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 3.2e-49
                    EEEEEETTT-.TT--HHHHHHHHHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH................... CS
  DNA_primase_S   1 FDiDmddyddcseatvcekcwkfvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnly............... 81 
                    FDiDm+dyd                 + +vld +lr+ fg+k++lwv+sgrrG+H+w+sd +a +ltde+r+a+v  l+++               
     CDO71109.1 109 FDIDMTDYDS----------------ILRVLDRALRDQFGYKHLLWVYSGRRGIHLWISDREALELTDEQRRALVGWLTVIqggkemhkkvnvrlg 188
                    9********9................**************************************************555555*****999999999 PP

                    ...................................HCHHHHCT--------............................................. CS
  DNA_primase_S  82 .rplhpflsrsmlkivkpvveeiileeqdpf....eikkllrllpdkslre..kkkw.....................................ea 133
                     +pl p+l+ +  k ++pv+ + il +q+ f    +++ ll+l+pdk+  +  +++w                                     +a
     CDO71109.1 189 sKPLPPSLASA-YKMLEPVFHDLILADQNCFaseeGWDALLHLIPDKDIVQnlREQWaespgrssedkwqdledeiaekpskgkganffqaamtAA 283
                    99999***999.************************************999**7777777777777777*************************** PP

                    ............-----------------....---------. CS
  DNA_primase_S 134 kedivlvllyprldeqvtkgikhllkapfcihgktgnvcvpld 176
                    kedivl+++yprld +v+k+++hllkapfc+h+ktg+vcvp+d
     CDO71109.1 284 KEDIVLQYTYPRLDAEVSKHRNHLLKAPFCVHPKTGRVCVPVD 326
                    *****************************************98 PP

>> DUF2448  Protein of unknown function C-terminus (DUF2448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     4e-05      0.36      75     108 ..     212     246 ..     169     252 .. 0.73
   2 ?   -3.5   0.0      0.86   7.7e+03      72      88 ..     350     366 ..     322     393 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4e-05
     DUF2448  75 aaenetakeaegwqellellPek.vveklklawqy 108
                  a+++   ++egw+ ll+l+P+k +v++l++ w+ 
  CDO71109.1 212 LADQNCFASEEGWDALLHLIPDKdIVQNLREQWAE 246
                 45666668899**********974789******85 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.86
     DUF2448  72 nesaaenetakeaegwq 88 
                 ++++aen ta++++ w+
  CDO71109.1 350 SHAHAENGTAEHHSDWE 366
                 33444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.35s 00:00:01.04 Elapsed: 00:00:00.57
# Mc/sec: 2110.81
//
Query:       CDO71110.1  [L=231]
Description: hypothetical protein BN946_scf184844.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.33s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 1305.54
//
Query:       CDO71111.1  [L=1855]
Description: hypothetical protein BN946_scf184844.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-41  141.1   0.0    3.1e-27   95.7   0.0    2.9  2  ABC_tran      ABC transporter
    1.9e-30  106.5  25.7    3.6e-17   62.9   4.1    4.1  4  ABC_membrane  ABC transporter transmembrane region
    0.00033   20.3   0.9       0.57   10.0   0.1    2.6  2  AAA_29        P-loop containing region of AAA domain
     0.0028   17.1   0.1        1.2    8.5   0.0    3.5  3  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.013   15.8   0.1         11    6.3   0.0    3.0  2  AAA_22        AAA domain
      0.021   14.4   0.1        7.9    6.0   0.1    2.5  2  AAA_25        AAA domain
      0.034   14.3   0.4       0.15   12.1   0.1    2.3  2  DUF87         Helicase HerA, central domain
      0.093   13.1   0.7        1.4    9.3   0.0    2.6  2  AAA_16        AAA ATPase domain
       0.15   12.5   0.4         15    6.0   0.1    2.5  2  AAA_23        AAA domain
        0.3   10.5   1.0       0.75    9.3   1.0    1.6  1  SieB          Super-infection exclusion protein B


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   6.1e-14   1.1e-10       3     134 ..     711     846 ..     709     849 .. 0.72
   2 !   95.7   0.0   1.7e-30   3.1e-27       1     134 [.    1347    1502 ..    1347    1504 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 6.1e-14
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.HHHTCHHHHHHHSTTGG.T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.x RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.esdeeiekalsklglke.l 97 
                 +++l++  ge+  i G+ G+GKS Ll +l+g+ +  +G++ +   + ++      +     +++  e+ lf+   v+e+  +  e  ++ls l++ e  
  CDO71111.1 711 DLTLDFPIGELSLICGKLGSGKSLLLLALLGEADLLSGQMICPRSPPDTlaSFAGVIPPPGEWIVPENILFDLPYVEERyRKVLESCALLSDLEILEdG 809
                 78999***********************************77766666633222222222333433444555444555542223345555555544435 PP

                 TCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  98 kdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                 +++ +++++ +LSgGqk rv+lara+ +++++l+lD+
  CDO71111.1 810 DESEIGERGVNLSGGQKARVSLARAVYSRASVLFLDD 846
                 577889999***************************8 PP

  == domain 2  score: 95.7 bits;  conditional E-value: 1.7e-30
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l+n+++++++gekv+++G++G+GKStL+  + + ++p+eG+il+dg d++++ l  lr+++ ++pq+p++ +++ +r++      ++d+ei++al++
  CDO71111.1 1347 LHNLNFEIRPGEKVGVLGRTGSGKSTLALSFFRFVEPAEGRILVDGLDISQIGLADLRSRLTIIPQDPTILSGT-LRSTldvfgeYEDAEIYEALRR 1442
                  79*******************************************************************99999.88889999999999******** PP

                  STTGG.................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                  xxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke.................lkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134 
                  + l+                    d++v++ ++++S G+kq +++ara+lk++k+ll+DE
  CDO71111.1 1443 VHLIPageaseesegvnanvfrNLDSPVSEAGENFSTGEKQLLCMARAILKRSKVLLMDE 1502
                  ***9999***********99999999999999***************************9 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   3.6      0.61   1.1e+03       1      77 [.     314     390 ..     314     402 .. 0.72
   2 !   56.1   0.6   2.4e-18   4.3e-15      98     231 ..     450     582 ..     444     590 .. 0.92
   3 !   62.9   4.1     2e-20   3.6e-17       4     248 ..    1016    1259 ..    1013    1279 .. 0.81
   4 ?   -1.9   0.1       1.2   2.1e+03      42      74 ..    1661    1693 ..    1634    1701 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.61
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlr 77 
                   ++++i la+++ vl  + +++l+r+++ l  ++  ++    +++++ l++  a +++ ++q + l+ t  +++ r++
    CDO71111.1 314 MFVVIALAAICAVLFYVPAYFLKRVVQYLEIDSARDFRGWGFVFCAALFVSHAATQILTGQLWSLSTTTLQVRLRIQ 390
                   5788999999999999*************999999995555556666666666666666666666555555555444 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 2.4e-18
                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                    ++++++t+dv++++++ +  + ++  ++ +++g++ ++ +lg++  + +la++ l+++++ + +k++  ++++ +ka++++ ++++E+l gir++k
    CDO71111.1 450 AQIMTLMTTDVDRVSEFAWHLFTIVDAPIEIVIGTMFLYSLLGVS-CFFGLAVTCLFLPMNHFAGKVVVGAQDNLMKARDERVALMNEILGGIRMLK 545
                   689*****************************************9.5************************************************** PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligit 231
                    +++e++f+ +  k +e+++k ++   +++ l ++i 
    CDO71111.1 546 FMAWERNFEARVLKVRERELKYQRLNYTIEVLWNAIC 582
                   ********************99988777776666654 PP

  == domain 3  score: 62.9 bits;  conditional E-value: 2e-20
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHH CS
  ABC_membrane    4 iillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvG 98  
                     il+++la +  +l + +l  +  ++  ++ +      + + +++++++a   ++ + +y  n  g+++s++l ++l++ +l ++++f+dt s G
    CDO71111.1 1016 FILALALAALSPVLENGWLRIWSGSYENNSVS------HPASYYISIYAA---ITGIGEYSTNQGGIQASVTLYKRLLEGVLFANIRFHDTVSRG 1101
                    45555555555555666666666666553333......446666666654...344567777888****************************** PP

                    HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   99 ellsrltndvsklrdglgeklglffqslltfvgglivmfy.lgwkltlvllailpliilvsaviak.......ilkklkkkeqkavakassvaeE 185 
                    +ll+r+ +d + +++ l++++g  + + ++++++++ + +  g+ + ++ +++ +l++ v +v++        ++ ++   ++ ++++++s+  E
    CDO71111.1 1102 RLLNRFGKDFEGIDSNLSDNFGRSVFYAVSVLTTFVTISIvGGPLFVVAAIIFGFLYYSVGKVRNLplalwdlFTIPVLLADSVTRSPLYSIYGE 1196
                    ************************9999999999999998355666666778889999999988752222222677899999************* PP

                    HHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  186 slsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGtt 248 
                    ++sg+ +++afg+ ++fl+      +++ + ++++  +n++l+++++ll+++++ +++++++ 
    CDO71111.1 1197 TISGVTVLRAFGASSKFLRDMLRCADTNSNPYYWMWGVNRWLSARFNLLSSAVIGITAFVAVL 1259
                    ********************************************************9998765 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.2
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   42 vysllllllglaqfilallqsyllnvtgerlsk 74  
                     ++ ++ll +l+ +++++++  l+  +++r ++
    CDO71111.1 1661 SILFTFLLSFLGISCVTIVSGLLWQRVASRRRR 1693
                    222222222222223333333333444444333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0012       2.2      18      41 ..     715     738 ..     709     741 .. 0.79
   2 !   10.0   0.1   0.00032      0.57      14      38 ..    1349    1373 ..    1345    1376 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
      AAA_29  18 eidlkgatlltGpsGsGKSTllDA 41 
                 ++   +  l+ G+ GsGKS ll A
  CDO71111.1 715 DFPIGELSLICGKLGSGKSLLLLA 738
                 55555689***********99855 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00032
      AAA_29   14 ghtieidlkgatlltGpsGsGKSTl 38  
                  +  +ei++ + + + G++GsGKSTl
  CDO71111.1 1349 NLNFEIRPGEKVGVLGRTGSGKSTL 1373
                  55678888888999**********8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.073   1.3e+02      26      49 ..     721     741 ..     711     749 .. 0.83
   2 !    8.5   0.0    0.0007       1.2     135     199 ..     808     881 ..     784     896 .. 0.71
   3 ?    0.7   0.1      0.16     3e+02      29      43 ..    1362    1376 ..    1347    1505 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.073
                 EEEEEESTTSSHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLG 49 
                 ++ i G+ GSGKs ll A+   LG
  CDO71111.1 721 LSLICGKLGSGKSLLLLAL---LG 741
                 789**********999998...55 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0007
                 T...........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHH.HHHHH.HHCTTSEEEEE-SSH CS
                 x...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 135 e...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkv.aellk.eksknaQfivislre 199
                 +           +LSgG+k+ v+la       +++a++ +lD++ +a D++  + +  + lk e  +   +i +s++ 
  CDO71111.1 808 DgdeseigergvNLSGGQKARVSLA----RAVYSRASVLFLDDVLSAVDAHTAHHLyHQCLKgELMQGRTLILVSHHV 881
                 3555555555558******988875....557999**************99887661456764555556666666665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.16
                  EEESTTSSHHHHHHH CS
                  xxxxxxxxxxxxxxx RF
       SMC_N   29 ivGpNGSGKsnlldA 43  
                  ++G+ GSGKs l  +
  CDO71111.1 1362 VLGRTGSGKSTLALS 1376
                  778888888877544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.008        14       8      29 ..     722     743 ..     719     764 .. 0.86
   2 ?    6.3   0.0    0.0059        11      10      30 ..    1362    1382 ..    1359    1505 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.008
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                  +++G  G+GK++ll  ll ++
  CDO71111.1 722 SLICGKLGSGKSLLLLALLGEA 743
                 58*************9998776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0059
      AAA_22   10 vtGesGtGKTtllrrlleqld 30  
                  v G +G+GK+tl+  +++  +
  CDO71111.1 1362 VLGRTGSGKSTLALSFFRFVE 1382
                  679**********99999874 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0044       7.9      30      54 ..     716     740 ..     689     748 .. 0.81
   2 ?    5.4   0.0    0.0066        12      32      54 ..    1356    1378 ..    1340    1389 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0044
      AAA_25  30 lpagelallaGapgtGKttlaldla 54 
                  p gel+l++G  g+GK+ l+l l 
  CDO71111.1 716 FPIGELSLICGKLGSGKSLLLLALL 740
                 4789*****************9985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0066
      AAA_25   32 agelallaGapgtGKttlaldla 54  
                   ge + + G++g+GK+tlal+  
  CDO71111.1 1356 PGEKVGVLGRTGSGKSTLALSFF 1378
                  46677788************976 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         2   3.6e+03      26      44 ..     722     740 ..     710     743 .. 0.80
   2 ?   12.1   0.1   8.6e-05      0.15      25      42 ..    1359    1376 ..    1357    1390 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2
       DUF87  26 lAilgsTGsGKSntvavLl 44 
                 ++i g+ GsGKS +   Ll
  CDO71111.1 722 SLICGKLGSGKSLLLLALL 740
                 5789999*****9877766 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.6e-05
       DUF87   25 HlAilgsTGsGKSntvav 42  
                   +++lg+TGsGKS+++ +
  CDO71111.1 1359 KVGVLGRTGSGKSTLALS 1376
                  589***********9865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4      0.29   5.2e+02      25      46 ..     720     741 ..     713     896 .. 0.81
   2 ?    9.3   0.0   0.00076       1.4      27      63 ..    1360    1396 ..    1346    1483 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.29
      AAA_16  25 elvllsGesGvGKsslvrellr 46 
                 el l+ G  G+GKs l+ +ll 
  CDO71111.1 720 ELSLICGKLGSGKSLLLLALLG 741
                 5668899999999999987774 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00076
      AAA_16   27 vllsGesGvGKsslvrellralekdggiflrgkcdql 63  
                  v + G  G+GKs+l+ +++r +e ++g  l    d +
  CDO71111.1 1360 VGVLGRTGSGKSTLALSFFRFVEPAEGRILVDGLDIS 1396
                  6699***************999888766665555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0084        15      12      39 ..     711     739 ..     706     741 .. 0.84
   2 ?    3.9   0.0     0.037        66      24      35 ..    1362    1373 ..    1348    1380 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0084
      AAA_23  12 dqeidF.skgltlItGpNGaGKTTildAi 39 
                 d ++dF    l lI+G+ G+GK+ +l A+
  CDO71111.1 711 DLTLDFpIGELSLICGKLGSGKSLLLLAL 739
                 56788876689************999776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.037
      AAA_23   24 ItGpNGaGKTTi 35  
                  + G +G+GK+T+
  CDO71111.1 1362 VLGRTGSGKSTL 1373
                  68*********9 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.0   0.00042      0.75       2      57 ..     318     373 ..     317     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00042
        SieB   2 laLiiasglllllPdsllekln..lgkfleeyglwiglvflisiayllaqvvskllae 57 
                 +aL++++++l  +P  +l+ +   l+  +++ + + g +f++++a++++++++ +l+ 
  CDO71111.1 318 IALAAICAVLFYVPAYFLKRVVqyLE--IDSARDFRGWGFVFCAALFVSHAATQILTG 373
                 6899**************99963333..78999******************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.28u 0.36s 00:00:01.64 Elapsed: 00:00:00.57
# Mc/sec: 9829.87
//
Query:       CDO71112.1  [L=266]
Description: hypothetical protein BN946_scf184844.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-56  191.0   0.0    2.6e-56  190.8   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      3e-52  176.9   0.0    4.4e-52  176.4   0.0    1.2  1  adh_short        short chain dehydrogenase
    4.5e-17   62.5   0.1    6.2e-17   62.1   0.1    1.1  1  KR               KR domain
    8.9e-05   22.1   0.0    0.00017   21.1   0.0    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.011   14.9   0.1      0.072   12.2   0.1    1.9  2  RmlD_sub_bind    RmlD substrate binding domain
       0.11   11.9   0.0       0.17   11.3   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.13   11.6   0.0       0.21   10.9   0.0    1.3  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
       0.15   11.9   0.2       0.27   11.0   0.2    1.3  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   0.0   1.2e-59   2.6e-56       1     233 [.      24     263 ..      24     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 1.2e-59
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH....HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea....kkrveelaeelgaev..lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpflet 90 
                   Ga +gIG+a+A alae+Ga+++l+ +   +      +++++ ++lg++v  +ecD +d ++v+ l++++ + + g +++lvn+agi ++  +p++++
    CDO71112.1  24 GATRGIGAACAIALAEAGANICLVRRPSPEgnqpTGSTASAIAALGRTVkiVECDLADLDAVRGLFQTALDAMgGDIHVLVNCAGIQRR--SPAVQF 118
                   999**********************98877632334566666678877556**********************999*************..****** PP

                   -HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                   +++++d++l+vnl+s++ll++aa ++m ++  g+i+n  s+   ++     ay+aaK+al +lt++l +e+ +++++vN ++pg+i+T++++++   
    CDO71112.1 119 PESDWDDVLNVNLKSVWLLSQAAGQHMVPRrrGKIINFCSLLTFQGGFTVPAYAAAKGALGQLTKALSNEWSKDNVQVNGICPGYIATDMNEKLLAD 215
                   *************************7765557***************************************************************** PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +  l+++ +r+p gr+g+p++ a  ++fLas +++y+ G+ lvvDgG+
    CDO71112.1 216 PVRLRQISERIPPGRWGEPRDFAGPVVFLASAASQYVCGELLVVDGGW 263
                   ***********************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.0   1.9e-55   4.4e-52       2     191 ..      19     213 ..      18     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 1.9e-55
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHH....HHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGG CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseeklee....vakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfse 95 
                  vl+tGa++GIG a+a +la++Ga++ +v r + + ++    +a+ + ++g+++ ++++D++d ++v+ l+++a + + g ++vLvn+AGi++++p+ +
  CDO71112.1  19 NVLITGATRGIGAACAIALAEAGANICLVRRPSPEGNQptgsTASAIAALGRTVKIVECDLADLDAVRGLFQTALDAMgGDIHVLVNCAGIQRRSPAVQ 117
                 79**************************9997665554222277888888****************************999****************** PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 + e++w++v++vNl++v ll++a+ ++m+ +++G+I+n +S  ++++ + v+aY+A+K+a+ +lt++l++e+++++++vn+++PG+++Tdm+++l 
  CDO71112.1 118 FPESDWDDVLNVNLKSVWLLSQAAGQHMVPRRRGKIINFCSLLTFQGGFTVPAYAAAKGALGQLTKALSNEWSKDNVQVNGICPGYIATDMNEKLL 213
                 ********************************************************************************************9975 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.1   2.8e-20   6.2e-17       3     162 ..      20     184 ..      19     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2.8e-20
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TTT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdkllee 99 
                 +litG++ g+G + a  lae ga+ + l+ R + + ++   ++ ++++alg +v++v++D++d dav+ l++++ + + + i+  +++Ag+ r ++  +
  CDO71112.1  20 VLITGATRGIGAACAIALAEAGAN-ICLVRRPSpEGNQPTGSTASAIAALGRTVKIVECDLADLDAVRGLFQTALDAMgGDIHVLVNCAGIQRRSPAVQ 117
                 69********************96.555555541444445578999*************************99988888******************** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                   ++d++ vl+  +k +w L ++  +    ++   ++ f S+ ++ g ++  +Yaaa   l +l + 
  CDO71112.1 118 FPESDWDDVLNVNLKSVWLLSQAAGQhmvpRRRGKIINFCSLLTFQGGFTVPAYAAAKGALGQLTKA 184
                 ***********************9997887888999*********************9988887765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   7.7e-08   0.00017       1      67 [.      20      95 ..      20     158 .. 0.81
   2 ?   -2.7   0.0       1.5   3.3e+03     141     159 ..     170     188 ..     167     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 7.7e-08
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpda 67
                +l+tGat  iG+a + al+e+g ++  + r s ++n+    ++          ++ve+dl d +a++ lf++ + da
  CDO71112.1 20 VLITGATRGIGAACAIALAEAGANICLVRRPSPEGNQPTGSTAsaiaalgrtvKIVECDLADLDAVRGLFQT-ALDA 95
                79**********************999999988888877777799*************************96.4443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHH CS
   Epimerase 141 pYaaaKlageklveayaaq 159
                 +YaaaK a  +l++a+ ++
  CDO71112.1 170 AYAAAKGALGQLTKALSNE 188
                 6999999999999988765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.2e-05     0.072       2      93 ..      19     145 ..      18     148 .. 0.86
   2 ?    0.5   0.0      0.12   2.7e+02       6      30 ..     175     199 ..     172     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........................T--TTSHHHHHHHH......HHH--SEEEE-----.... CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre.........................eldltdaeavaell......keakpdvvvnaAAyt.... 62 
                    ++l+tGa+  +G + a +lae+g++++ + r+                         e+dl+d +av+ l+         + +v+vn+A  +    
     CDO71112.1  19 NVLITGATRGIGAACAIALAEAGANICLVRRPspegnqptgstasaiaalgrtvkivECDLADLDAVRGLFqtaldaMGGDIHVLVNCAGIQrrsp 114
                    69*********************9999998889***********************************9994444322235669*****9873333 PP

                    -HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT CS
  RmlD_sub_bind  63 avDkaEseeeaayavnaeavealAeaaaavg 93 
                    av   Es+ +   +vn ++v  l++aa ++ 
     CDO71112.1 115 AVQFPESDWDDVLNVNLKSVWLLSQAAGQHM 145
                    577779999***************9998775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                    ESTTSHHHHHHHHHCTTTSEEEEEE CS
  RmlD_sub_bind   6 tGanGqlGseLakqlaeeglevlal 30 
                     Ga Gql ++L ++ ++++++v ++
     CDO71112.1 175 KGALGQLTKALSNEWSKDNVQVNGI 199
                    5999*************99998654 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.5e-05      0.17       1      73 [.      21      91 ..      21     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.5e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73
                   LiTG +  iG+  a  L e g +++ + r s + n  + ++      + l +++k++++Dl D ++++ l++ 
     CDO71112.1 21 LITGATRGIGAACAIALAEAGANICLVRRPSPEGNQPTGSTASA--IAALGRTVKIVECDLADLDAVRGLFQT 91
                   9***********************98877777777555444333..3467899****************9986 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.3e-05      0.21      33      91 ..      14      72 ..       9      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.3e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpe 91
                   +l+g++v++ G+ + +g + a+ L+e++a + ++ + + + ++ t +    ++a+G+  
     CDO71112.1 14 SLAGQNVLITGATRGIGAACAIALAEAGANICLVRRPSPEGNQPTGSTASAIAALGRTV 72
                   789***********************************999999999999999999864 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00012      0.27      40      63 ..      17      40 ..       6      48 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                     -SEEEEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafg 63
                      ++vL+ Ga  G G A+ ia+a +
       CDO71112.1 17 GQNVLITGATRGIGAACAIALAEA 40
                     589*****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 1463.37
//
Query:       CDO71113.1  [L=378]
Description: hypothetical protein BN946_scf184844.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-29  102.4   1.5      2e-29  101.7   1.5    1.4  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    7.5e-22   77.7   0.1    1.2e-21   77.0   0.1    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    2.5e-10   40.2   0.1    1.4e-07   31.2   0.1    2.4  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    1.3e-06   29.5   0.0    2.4e-06   28.6   0.0    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    0.00051   19.4   0.4     0.0015   17.9   0.0    1.9  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.015   15.9   0.0      0.042   14.5   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
      0.019   14.6   0.1      0.029   13.9   0.1    1.2  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.019   15.6   0.0      0.045   14.5   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
      0.039   13.3   0.0      0.076   12.4   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   1.5   9.9e-33     2e-29       2     108 ..      33     146 ..      32     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 9.9e-33
                 TEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS.....S-S CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs.....ldG 93 
                 g++ + v a+g+CgsDlh++ +g   ++ v++pl+lGHE++G+v +vgp+vk+l  G+rV++e+ i c++C++C +g++nlC+++++++        dG
  CDO71113.1  33 GQAQVAVMATGLCGSDLHYYVHGrnGDFVVQAPLVLGHEAAGIVTAVGPGVKHLVPGQRVAIEAGIMCNNCSYCAKGRYNLCKNMRFCSSAktfphADG 131
                 7899****************998788999************************************************************999******* PP

                 SSBSEEEECGGGEEE CS
       ADH_N  94 gfaeyvvvpekklvk 108
                 +++e++  p++ l++
  CDO71113.1 132 TLQERMNHPAHVLHP 146
                 *********999887 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   6.2e-25   1.2e-21       1     129 [.     189     332 ..     189     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 6.2e-25
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTT.ESEEEET.............TTC.H.HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklG.adeviny.............kea.d.lverikeltggegvdvvfecvGsgatleaalkllkpg 82 
                 ++Gl+a++lAk +Ga +v+a+d+++ +l++a  +G a +v+               ++a d ++ +++e+  ++g+d+vfec+G++ ++++++ ++  g
  CDO71113.1 189 AIGLLACALAKSYGAtRVVAIDINQTRLDFALHNGfAQQVYCLpvadraktteeqlRRAkDtISVALAEFNMPDGFDLVFECTGAEPCIQMSVHAAVTG 287
                 69*********************************77776666899777666666633333144444444459************************** PP

                 EEEEECSCTSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  83 GrlvvvGggkgeeefdlrnlllkeksilGsllgslreefkealdlla 129
                 G++++vG+g+ + +++l+  + +e+ ilGs+++   +++++al+lla
  CDO71113.1 288 GKVMLVGMGSRNVTLPLSAAATREVDILGSFRYA--HTYPTALALLA 332
                 ********999999********************..*******9987 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   7.2e-11   1.4e-07       5     201 ..     157     363 ..     154     375 .. 0.64

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 7.2e-11
  Glu_dehyd_C   5 vLvEPisiveKaielaeasrsafe.wepesalvlGaGslGLLalalleaeerglervyvlg.rrdrpd..ptidlveelGatYvdsretpvde..... 93 
                   L EP+s+   a   a      f+  + +++lv G G++GLLa al +  + g +rv  ++  + r d  +   + +++    v  r ++ +e     
   CDO71113.1 157 ALAEPLSVLIHASRRA-----DFNpSSQSTVLVFGVGAIGLLACALAK--SYGATRVVAIDiNQTRLDfaLHNGFAQQVYCLPVADRAKTTEEqlrra 247
                  6778888876554333.....3332456789************55443..466777777763222222112333444444443433333222211111 PP

  Glu_dehyd_C  94 ...ip......easeemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpesll 182
                     i+      ++   +dlv+E+TG+ + +  +++a  + G ++L+G+ + + v +  ++  +        ++Gs    ++ + +a++ La+ +   +
   CDO71113.1 248 kdtISvalaefNMPDGFDLVFECTGAEPCIQMSVHAAVTGGKVMLVGMGSRN-VTLPLSAAATR----EVDILGSFR-YAHTYPTALALLASGKLPNI 339
                  11111111111344578******************************98765.66666555444....34699**86.4578**************** PP

  Glu_dehyd_C 183 delvtkvvdldeleeAfe.....d 201
                  ++++t++  l++ ++Afe     +
   CDO71113.1 340 EKIITHRFALKDTSRAFEllargR 363
                  *****************9555541 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.2e-09   2.4e-06      20     127 ..     261     364 ..     245     371 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.2e-09
                   TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH...----EEEEEEG CS
  ADH_zinc_N_2  20 gegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk...lrpvvdrvfpl 112
                   ++g+D+v++++g e  ++ s+++   gG++  +g g   s+++  p + + +r v++   f       a++  + +al+++Gk   ++  ++++f l
    CDO71113.1 261 PDGFDLVFECTGAEPCIQMSVHAAVTGGKVMLVGmG---SRNVTLPLSAAATREVDILGSFR-----YAHTYPTALALLASGKlpnIEKIITHRFAL 349
                   799*********99999****999555**9888844...56666666667889999999993.....677799**********88888899999*** PP

                   GGHHHHHHHHHSS-- CS
  ADH_zinc_N_2 113 eeaaeAhrylesgra 127
                   +++ +A+++l+ gr 
    CDO71113.1 350 KDTSRAFELLARGRD 364
                   ************996 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.8   1.6e+03      93     112 ..      59      78 ..      54     109 .. 0.64
   2 !   17.9   0.0   7.5e-07    0.0015      28      92 ..     179     247 ..     173     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.8
                  SEEEE---BTTSS---SC-H CS
  AlaDh_PNT_C  93 dvvigtvlipGkkaPkLvte 112
                  d v+ + l+ G++a+ +vt+
   CDO71113.1  59 DFVVQAPLVLGHEAAGIVTA 78 
                  67777777777777777775 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 7.5e-07
                  --EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHH..TTTCECEE..HCHHHHHHHHHHHH- CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqles..lgakfvev..lksqeellaeavkea 92 
                  +++vlv+G+G  Gl A a ak+ ga +V+++D++++rl    +  + ++ v    ++  +++ +e++++a
   CDO71113.1 179 QSTVLVFGVGAIGLLACALAKSYGAtRVVAIDINQTRLDFALHngFAQQ-VYClpVADRAKTTEEQLRRA 247
                  679*********************945**********986555454444.33334555555666666555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.1e-05     0.042       3      43 ..     185     228 ..     183     271 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-05
                      ET-T.TSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11   3 vGcG.tGrlaealakrg..arvvgvDlskemlklakekaseegl 43 
                      +G+G  G+la+alak +  +rvv++D++++ l+ a +++  +++
       CDO71113.1 185 FGVGaIGLLACALAKSYgaTRVVAIDINQTRLDFALHNGFAQQV 228
                      688889********7777*****************999988885 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.5e-05     0.029       2      37 ..     181     217 ..     180     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideekvd 37 
                     ++ v+G G +Gl  +a+  + g   v+ +Di++++ d
      CDO71113.1 181 TVLVFGVGAIGLLACALAKSYGaTRVVAIDINQTRLD 217
                     688************9999999899********9986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.3e-05     0.045       1      56 [.     182     238 ..     182     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
                      EEEET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCC CS
  Methyltransf_25   1 vLdlGcGt.GrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdae 56 
                      vL +G G  G l+ alak +g+ +v+++Di+++ l+ a ++  ++++ +  v   a+
       CDO71113.1 182 VLVFGVGAiGLLACALAKSYGATRVVAIDINQTRLDFALHNGFAQQVYCLPVADRAK 238
                      67778886699***************************9999888775555555553 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.8e-05     0.076      34      72 ..     177     216 ..     164     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.8e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHH CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkke 72 
                    s++tv ++G+G+IG  +  ++k+ g+ +v+a+d ++++ 
    CDO71113.1 177 SSQSTVLVFGVGAIGLLACALAKSYGAtRVVAIDINQTRL 216
                   5799**********************989***99997754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 2086.01
//
Query:       CDO71114.1  [L=626]
Description: hypothetical protein BN946_scf184844.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-43  144.6   0.0    3.7e-20   72.0   0.0    2.5  2  GST_N_2    Glutathione S-transferase, N-terminal domain
    5.7e-32  109.6   0.1      2e-15   56.6   0.0    2.5  2  GST_C_2    Glutathione S-transferase, C-terminal domain
    2.6e-16   59.6   0.2    4.9e-07   29.9   0.0    2.7  2  GST_C      Glutathione S-transferase, C-terminal domain
    7.4e-11   42.1   0.1    0.00022   21.4   0.0    2.5  2  GST_C_3    Glutathione S-transferase, C-terminal domain
    9.2e-10   38.8   0.0     0.0073   16.7   0.0    4.2  2  GST_N_3    Glutathione S-transferase, N-terminal domain
    0.00022   20.9   0.3       0.84    9.5   0.0    2.6  2  GST_C_6    Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.026   14.6   0.0        7.3    6.7   0.0    2.6  2  DUF4973    Domain of unknown function (DUF4973)
      0.064   13.5   0.3         29    4.9   0.0    3.4  4  CBM_35     Carbohydrate binding module (family 35)
      0.066   13.3   0.1          6    6.9   0.0    2.3  2  DNMT1-RFD  Cytosine specific DNA methyltransferase replicatio


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.8e-23   3.7e-20       1      69 [.      54     152 ..      54     153 .. 0.89
   2 !   70.0   0.0   7.7e-23   1.5e-19       1      69 [.     361     459 ..     361     459 .. 0.79

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.8e-23
                 S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHH............................HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvvvlepkgfekseef............................prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                 aCPwa R+li+++lkgled i v v  p  +e ++ f                            p++ +r+tVP+Lwdk+++  v+neS+eI+r+l++
  CDO71114.1  54 ACPWATRTLITRKLKGLEDFIGVTVVSPRMDEHGWPFasvdpfpgadedpftgaqhvkdiylkvqPDYEGRFTVPILWDKKTStiVNNESAEIVRILNS 152
                 7**********************7666677777766688888899999999****************************955559************98 PP

  == domain 2  score: 70.0 bits;  conditional E-value: 7.7e-23
                 S-HHHHHHHHHHHHCT--EEEEE..E..H...-TTSHHHHH............................HHHCTTTSSSEEE-CTTE..EEESHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisv..v..vlepkgfekseef............................prlnprgtVPvLwdkdgq..vineSseIlr 65 
                 aCPwa R+li+++ kgled + v  v   ++++g+     f                            p++++r+tVP+Lwdk+++  v+neSseI+r
  CDO71114.1 361 ACPWATRTLIVRKIKGLEDFVGVtvVspRMGEHGW----PFasadafpgadkdplydaqhvkdlylrvkPDYDGRFTVPILWDKKTStiVNNESSEIIR 455
                 7*****************99888432333333333....3344445566666677799999**********************955559********** PP

                 HHHH CS
     GST_N_2  66 ylet 69 
                 ++++
  CDO71114.1 456 MFNN 459
                 **95 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   7.2e-17   1.4e-13       2      68 ..     201     273 ..     200     274 .. 0.95
   2 !   56.6   0.0     1e-18     2e-15       2      68 ..     508     580 ..     507     581 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 7.2e-17
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                  a+e+a+  l+++ld le++L+++++l G+q+t aD++l++++vr++ ++ g+       ir +yp ++ Wl+
  CDO71114.1 201 KAYEAAVIPLFESLDRLEKILTGKDYLVGNQLTEADVRLFVTIVRFDPVYFGHfkcnirSIRGGYPAIHLWLR 273
                 58999999******************************************9999**999999*********97 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 1e-18
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                 +a+e+a++ l+a+ld le+ L++++fl Gdq+t aD++l+++++r++ ++ g+      +ir++yp ++ Wl+
  CDO71114.1 508 HAYEAAVKPLFASLDRLEKMLTGKDFLIGDQLTEADVRLFVTIIRFDPVYVGHfkcnirTIRDGYPAIHLWLR 580
                 789************************************************99******************97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.1e-09   4.2e-06      18      88 ..     197     274 ..     164     277 .. 0.83
   2 !   29.9   0.0   2.5e-10   4.9e-07      18      88 ..     504     581 ..     468     584 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.1e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHH.HHHHHHH....HHHHHTTTTT..TTTSHHHHHHHHH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADi.alvpiln....wlqrlglafg..qekfpnlkawler 88 
                 ++ ++++++a   ++e+l++le+ l ++dylvG++lt AD+ ++v+i++    +  +++ ++   + ++p+++ wl +
  CDO71114.1 197 ATTQKAYEAAVIPLFESLDRLEKILTGKDYLVGNQLTEADVrLFVTIVRfdpvYFGHFKCNIRsiRGGYPAIHLWLRK 274
                 556778888888999**************************88889988555555555555559999****9999876 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHH.HHHHHHHHHHHHTTTTT......TTTSHHHHHHHHH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADi.alvpilnwlqrlglafg......qekfpnlkawler 88 
                 ++ + ++++a + ++++l++le+ l ++d+l+Gd+lt AD+ ++v+i+++ + +++ f+      ++++p+++ wl +
  CDO71114.1 504 ATTQHAYEAAVKPLFASLDRLEKMLTGKDFLIGDQLTEADVrLFVTIIRFDPVYVGHFKcnirtiRDGYPAIHLWLRK 581
                 56788999999******************************9999***966666666666666************976 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   0.00022      19      65 ..     198     244 ..     177     272 .. 0.77
   2 !   18.2   0.0   1.1e-06    0.0022      31      65 ..     519     551 ..     487     587 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHCH..HHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHH CS
     GST_C_3  19 ekkkefleerlpkf..lkyfekvlkkkgggylvgdklTyADlalfqvld 65 
                   +k++    +p f  l+++ek+l+  g++ylvg++lT AD+ lf  + 
  CDO71114.1 198 TTQKAYEAAVIPLFesLDRLEKILT--GKDYLVGNQLTEADVRLFVTIV 244
                 4455555555554433889999999..999**************98775 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.1e-06
                 CHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHH CS
     GST_C_3  31 kflkyfekvlkkkgggylvgdklTyADlalfqvld 65 
                   l+++ek+l+  g+++l+gd+lT AD+ lf  + 
  CDO71114.1 519 ASLDRLEKMLT--GKDFLIGDQLTEADVRLFVTII 551
                 34666777777..999**************98775 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.7e-06    0.0073       1      72 [.      49     155 ..      49     159 .. 0.75
   2 !   13.7   0.0   3.1e-05     0.062       1      66 [.     356     456 ..     356     464 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.7e-06
                 EES-TTSHHHHHHHHHHHHHT--....EEEE---.......................TTTT.HHHHHHH-....TT--SSEEETTS-...EEESHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglp....vevvevt.......................pgeh.deellakn....plgkvPvLeddge...altdSlaIi 64 
                 Ly ++a+p+a+r  ++ ++kgl+    v+vv+                         + +h ++ +l++     ++ +vP+L d  +   +  +S++I+
  CDO71114.1  49 LYVSYACPWATRTLITRKLKGLEdfigVTVVSPRmdehgwpfasvdpfpgadedpftGAQHvKDIYLKVQpdyeGRFTVPILWDKKTstiVNNESAEIV 147
                 9*********************86655333333356666667777788888888776555667777777766678889999987755445666999999 PP

                 HHHHHHH- CS
     GST_N_3  65 dyLeelyp 72 
                 + L ++++
  CDO71114.1 148 RILNSAFN 155
                 99998876 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.1e-05
                 EES-TTSHHHHHHHHHHHHHT--....EEEE---.......................TTTT.HHHHHHH-....TT--SSEEETTS-...EEESHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglp....vevvevt.......................pgeh.deellakn....plgkvPvLeddge...altdSlaIi 64 
                 Ly ++a+p+a+r  ++ + kgl+    v+vv+                           +h ++ +l++     ++ +vP+L d  +   +  +S++Ii
  CDO71114.1 356 LYVSYACPWATRTLIVRKIKGLEdfvgVTVVSPRmgehgwpfasadafpgadkdplyDAQHvKDLYLRVKpdydGRFTVPILWDKKTstiVNNESSEII 454
                 9*********************75544344333366667777777777766666665333344445554445556777777766544334445777777 PP

                 HH CS
     GST_N_3  65 dy 66 
                 + 
  CDO71114.1 455 RM 456
                 65 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00073       1.5       4      31 ..     213     240 ..     211     256 .. 0.89
   2 !    9.5   0.0   0.00042      0.84       5      31 ..     521     547 ..     519     554 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00073
     GST_C_6   4 dleaLselLgdkkyFfGdkPtslDAlvF 31 
                  l+ L ++L  k+y+ G++ t++D+ +F
  CDO71114.1 213 SLDRLEKILTGKDYLVGNQLTEADVRLF 240
                 5788999**88******99*****9888 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00042
     GST_C_6   5 leaLselLgdkkyFfGdkPtslDAlvF 31 
                 l+ L ++L  k+++ Gd+ t++D+ +F
  CDO71114.1 521 LDRLEKMLTGKDFLIGDQLTEADVRLF 547
                 778999**88*************9888 PP

>> DUF4973  Domain of unknown function (DUF4973)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0036       7.3      17      45 ..     106     134 ..     102     158 .. 0.82
   2 ?    5.1   0.0     0.011        22      17      46 ..     413     442 ..     408     493 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0036
                 TTS-EEEEEEESS-TTEEEEEEEEE---- CS
     DUF4973  17 nskgvtdiyvrykkegkstyqlPvivsGs 45 
                 +++ v+diy++ +++ ++++ +P++    
  CDO71114.1 106 GAQHVKDIYLKVQPDYEGRFTVPILWDKK 134
                 5789********************97544 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
                 TTS-EEEEEEESS-TTEEEEEEEEE----- CS
     DUF4973  17 nskgvtdiyvrykkegkstyqlPvivsGst 46 
                 +++ v+d+y+r k++  +++ +P++    t
  CDO71114.1 413 DAQHVKDLYLRVKPDYDGRFTVPILWDKKT 442
                 6899********************975444 PP

>> CBM_35  Carbohydrate binding module (family 35)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.015        29      44      63 ..      41      60 ..      39      63 .. 0.90
   2 ?    0.3   0.0      0.41   8.2e+02      36      72 ..     111     143 ..     102     189 .. 0.62
   3 ?    3.5   0.0     0.041        82      46      63 ..     350     367 ..     347     372 .. 0.86
   4 ?   -3.9   0.0       8.1   1.6e+04      38      62 ..     420     444 ..     417     448 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
      CBM_35 44 vekaGeynlnvtfsapygsK 63
                v+  G+y+l v ++ p++++
  CDO71114.1 41 VPEKGRYHLYVSYACPWATR 60
                8999*************875 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.41
      CBM_35  36 davslnVnvekaGeynlnvtfsapygsKentlvvnGt 72 
                  ++ l+V+ +  G++++ + +  + ++     v n +
  CDO71114.1 111 KDIYLKVQPDYEGRFTVPILWDKKTSTI----VNNES 143
                 5678899999999999999887654444....44433 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.041
      CBM_35  46 kaGeynlnvtfsapygsK 63 
                   G+y+l v ++ p++++
  CDO71114.1 350 EKGRYHLYVSYACPWATR 367
                 67*************976 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 8.1
      CBM_35  38 vslnVnvekaGeynlnvtfsapygs 62 
                 + l V+ +  G++++ + +  + ++
  CDO71114.1 420 LYLRVKPDYDGRFTVPILWDKKTST 444
                 5678888999999999998876555 PP

>> DNMT1-RFD  Cytosine specific DNA methyltransferase replication foci domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.003         6      62      95 ..     172     204 ..     152     206 .. 0.90
   2 ?    3.8   0.0     0.026        53      61      95 ..     478     511 ..     443     518 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.003
                 ....ES-ECEEEEEECSSSSBEEEEEEESS-EEE CS
   DNMT1-RFD  62 lqiklgpIkeWtisgvdegekalivlsTetadYk 95 
                 + +++ +I+eW ++ v++g  + +++ T +  Y+
  CDO71114.1 172 HRKEIDEINEWVYETVNNGV-YKAGFATTQKAYE 204
                 67899**************8.9******999996 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.026
                 E....ES-ECEEEEEECSSSSBEEEEEEESS-EEE CS
   DNMT1-RFD  61 glqiklgpIkeWtisgvdegekalivlsTetadYk 95 
                  l +++ ++++W ++ v++g  +  ++ T +  Y+
  CDO71114.1 478 HLRKEIDEVNDWVYDTVNNGV-YKSGFATTQHAYE 511
                 45689999***********98.9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.75u 0.37s 00:00:01.12 Elapsed: 00:00:00.67
# Mc/sec: 2828.17
//
Query:       CDO71115.1  [L=569]
Description: hypothetical protein BN946_scf184844.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-58  198.3   0.0    4.7e-58  197.0   0.0    1.5  1  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.17   12.1   0.1        4.9    7.4   0.0    2.6  2  SARS_X4   SARS coronavirus X4 like


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.0   0.0   5.3e-62   4.7e-58      11     441 ..     108     541 ..      96     560 .. 0.84

  Alignments for each domain:
  == domain 1  score: 197.0 bits;  conditional E-value: 5.3e-62
                 HCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH CS
        p450  11 gnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf 109
                 + +l l  ++  h +l++l+++yg+++r+ +++ +     +p+   + l+ +g  ++g      + +   +++   v  ++++ + + R+   +++  +
  CDO71115.1 108 MAFLSL--SGRQHLYLQSLHERYGDVVRIGPNELS---FRDPSVLSAMLGPGG-VPKGPLIAGRVLS---MTDVPYVGIMDPAVHAERRKPWSRAFSAS 197
                 334444..48899999***********99887765...478889999999998.8898877777777...8889999999******************* PP

                 STT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHH CS
        p450 110 gkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllr 207
                  +l ++e+ + + a++lv+ l+k+ +e     + ++l+ +a+d++++ +Fg   +ll+d +  +  +++++ + lls++   +  l p +  lp  ++ 
  CDO71115.1 198 -ALkEYEPAIARRASQLVNVLEKQEKEV---IVGKYLNFFAYDFMCDMAFGGGSELLRDGDKDNVWHLIDDAL-LLSTFASHVPYLGPYFIRLP-VIGA 290
                 .8889******************99999...7999*************************9988888888885.55566666666666333333.4444 PP

                 HHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
        p450 208 klkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidev 306
                 ++ +       + + l+ +r e+ +    +r+d  ++l  ++ +++++ + s ++l       ++aG+dTtss+l+   y+L+++P+++e+lreEid+ 
  CDO71115.1 291 RVGRL----LSYSRTLVLKRIESGS----RRKDIFHYLSHED-QQDKP-QPSLKHLLDDGVLAIVAGSDTTSSALTSLVYCLLTHPHAMERLREEIDHF 379
                 44444....3444444444444333....3467777777775.55555.89************************************************ PP

                 C.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS....CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...... CS
        p450 307 l.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk....dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg...... 393
                    +    + +++ +++yl+avi+EtLRl+p+vp++++R+v++     v ++ y++p+Gt++++ +y+l+rdp+ f p   eF p+R+l + g      
  CDO71115.1 380 YpVGENACDSKHFREMHYLTAVINETLRLYPPVPSGTQRRVPHhqseGVMLGSYFVPAGTVMFLHPYSLQRDPTNFfPFTAEFWPDRWLVAAGrtslad 478
                 9755568999*************************999999887775777777********************9777********************** PP

                 ...............CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTST CS
        p450 394 ...............nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpet 441
                                +++ ++ aflPF+ Gp nC+G++lA+ e++ ++  lLq+F++ l ++ 
  CDO71115.1 479 alaraprdtdkvdatAFRHNEAAFLPFSHGPANCVGKQLAMQEMRTVVCALLQKFDLRLHEGW 541
                 ***************9999**************************************996654 PP

>> SARS_X4  SARS coronavirus X4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00054       4.9      27      60 ..      85     120 ..      68     128 .. 0.81
   2 ?    1.6   0.0     0.035   3.1e+02       3      26 ..     395     418 ..     393     426 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
                 CSS---EETTTEEEEE--SEEE..EEE-TTS-EEEE CS
     SARS_X4  27 gnspfhpladnkfaltctsthf..afacadgtrhty 60 
                   spfhpla     l c  ++f  af    g +h y
  CDO71115.1  85 RVSPFHPLARYPGPLGCKLSKFwmAFLSLSGRQHLY 120
                 579**************9887744777888999988 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.035
                 EEEEEEETTSEEEEE-SSTT-EEE CS
     SARS_X4   3 yhyqecvrgttvllkepcpsgtye 26 
                  hy  +v   t+ l  p+psgt  
  CDO71115.1 395 MHYLTAVINETLRLYPPVPSGTQR 418
                 599999***************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.36s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 3068.31
//
Query:       CDO71116.1  [L=580]
Description: hypothetical protein BN946_scf184844.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-47  159.9   0.0    3.5e-29  101.9   0.0    2.3  2  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.38   11.3   4.1       0.53   10.8   2.2    2.2  2  Ytca      Uncharacterised protein family


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   4.6e-19   4.1e-15      12     329 ..      93     392 ..      83     394 .. 0.77
   2 !  101.9   0.0   3.9e-33   3.5e-29     329     451 ..     410     563 ..     408     575 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 4.6e-19
                 CHHHHTT...TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHT CS
        p450  12 nllqlgr...keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptlt 107
                 + ++++    ++  h ++++l+ +yg+i+r+ +++ ++  +s   + ++ ++ +g  ++g +      t    ++   v+ ++++ + + R+   +++ 
  CDO71116.1  93 SKFWMAYisvSGRQHLYIKSLHDRYGDIVRIGPNELSFRDIS---ILHSMMGIGG-LPKGSYLAGRALT---VTDLPFVAIMDSAVHAERRKPWARAFS 184
                 45555555557899********************99999998...6666666555.5555422222222...556679999999*************** PP

                 SHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHH CS
        p450 108 sfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkl 205
                    +l ++ +++   a++l++ l+k++ge     i ++++++a+d++++ ++g   +ll+d +  +  + +e+    ls+s   ++ + p ++ +   +
  CDO71116.1 185 AT-ALkEYAPMIANRASQLIRVLEKQCGEI---IIGDFFNYFAYDFMSDMAYGGGSELLRDGDKDNVWHIIEKG---LSSS--TFFSHVP-YLGVYCGH 273
                 *9.8889*********************98...8****************************884444444444...4333..3677777.33444456 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
        p450 206 lrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEid 304
                 l  ++ a   ++ ll +  e   + +++  ++ +d  ++l ++++ +k       ++l       ++aG+dTtss+l+ + ++L+++  + ++l+ Eid
  CDO71116.1 274 LPLFRPA---VERLLSHSKELALKRIERG-SKLKDIFHYLNNEDQPEKP--PPLLRHLLDDGVIAIVAGSDTTSSALTSMVFCLLTHAPAYRRLQGEID 366
                 6666666...5555555555555556666.3446777666666533333..58889999999999********************************** PP

                 HHC.CTTTT-HHHHCCT-HHHHHHHH CS
        p450 305 evl.gdkreptyddlqklpyldavik 329
                 +    d ++ + ++  +++yl+av +
  CDO71116.1 367 RFYpADEDPCDPKHHRDMHYLTAVMH 392
                 ***8888899999**********986 PP

  == domain 2  score: 101.9 bits;  conditional E-value: 3.9e-33
                 HHHHHHSCSSTTEEEEESSS...CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS..........................CTES CS
        p450 329 kEtLRlhpvvplllpRevtk...dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg..........................nskr 397
                 +Et Rl+p++p++++R v++    v ++ y++p+Gt+v++++y+++rdp +f p Pe F peR+l + g                          ++  
  CDO71116.1 410 NETIRLYPPAPSSTQRLVPHgsnGVMLGPYSVPAGTTVMLPPYTVQRDPRYFsPFPEDFWPERWLVAAGqlpladalvnaptgavsakneacrapPFAH 508
                 7*****************99884555666******************************************************************9999 PP

                 SCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.S CS
        p450 398 ksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks.g 451
                 +  aflPF+ Gp nC+G++lA+ e++ + a lLq+Fe+ l p+ d++  +++  +
  CDO71116.1 509 DGAAFLPFSHGPENCVGKQLAMQEMRTVAAALLQKFELRLRPGWDVREFERGFmD 563
                 9***************************************999999888877663 PP

>> Ytca  Uncharacterised protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.2   5.9e-05      0.53      19      57 ..       6      44 ..       4      45 .. 0.92
   2 ?   -3.6   0.0       1.9   1.7e+04      26      41 ..     535     550 ..     532     550 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.9e-05
        Ytca 19 aiaiaLtlvvrlvlvrlkleleplvlvYpclviflavll 57
                 +  +L+l+ ++v++r++  + p+ l+++c  +++++++
  CDO71116.1  6 YATCVLALITHQVFKRFETYSIPMHLLFLCAPLLFSFTI 44
                57789*******************************985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
        Ytca  26 lvvrlvlvrlklelep 41 
                 +v+ ++l++++l+l+p
  CDO71116.1 535 TVAAALLQKFELRLRP 550
                 5677889999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.49
# Mc/sec: 3567.90
//
Query:       CDO71117.1  [L=589]
Description: hypothetical protein BN946_scf184844.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-55  187.3   0.0    7.5e-55  186.5   0.0    1.3  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   0.0   4.2e-59   7.5e-55      16     448 ..     128     568 ..     111     582 .. 0.82

  Alignments for each domain:
  == domain 1  score: 186.5 bits;  conditional E-value: 4.2e-59
                 HTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSS...STTCGHHHHHHHHHHHHHHHTSHST CS
        p450  16 lgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkg...vlfangekwkklRrfltptltsfgk 111
                 +g  +  h+++++l++ yg+++r+ +++ +     +p+  ++ l+++g  + g  + a  a ++  f++ +   v+ +++  + + R+  +++l    +
  CDO71117.1 128 FG--GYQHRYVKRLHEYYGDVVRIGPNELS---FRDPSVLQAMLGTGG-LPRGP-YLASRALASTDFHNIDlpfVAIMDPVVHSERRKPWLRALSATAI 219
                 44..6789999***********99887765...478999999999998.66654.33333333344444431225677888899999999999999988 PP

                 TTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH..HHHCHHHHCCCCCHHHTCCSCHHHHH CS
        p450 112 lsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss..llskssvqllllfpllkylptkllrk 208
                 +++e++v   a++l++ lr+++ge     i ++++++a+d++++ +Fg   +ll+d +  +  +++ee ++   + ++++ l  +f         +l  
  CDO71117.1 220 KAYEPMVANRANQLMQVLREQRGEV---PIGKFFNYFAYDFLCDMAFGGGSELLRDGDKDNVWQLIEESIQgcTFISHVPYLGVYFG--------ILPG 307
                 8***********************9...8******************************9999999999774333333333333333........3344 PP

                 HHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC CS
        p450 209 lkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl 307
                 l+ av++l+ +++++  +r e  ++     +d+ ++l ++++ +k       + l +  ++ ++aG+dTts +l+   ++L++nP++ ++l+ Eid+  
  CDO71117.1 308 LRLAVDRLQAFTKRFTLKRIERGSE----IKDMFHYLNNEDQPEKP--PTPLQYLLEDGIVAIIAGSDTTSGALTGLVFCLLTNPSALKRLQAEIDQFY 400
                 4445566666666665555443333....45666776666533333..5788999999***************************************** PP

                 .CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS...CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS........ CS
        p450 308 .gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk...dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg........ 393
                  ++ ++   ++  +++yl+avi+EtLRl+p+vp++ +R+v++    v ++ y +p+Gt+v +++y++hrdp  f p Pe F peR+l + +        
  CDO71117.1 401 pPEEDPCNPEHHRDMHYLTAVINETLRLYPPVPTGSQRRVPRrsqGVMLGPYPVPEGTTVTLPPYTVHRDPRNFsPFPEDFWPERWLVAGEksslsdal 499
                 88888889999*****************************98775666666*************************************97799****** PP

                 ..............CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEES CS
        p450 394 ..............nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppile 448
                               ++  ++ af+PF+ Gp nC+ ++lA++e++ + + lLqnFe+ l p+   +  +e
  CDO71117.1 500 anapadeadhtataAFVHNDGAFFPFSHGPENCVAKQLAMHEMRTVTVALLQNFELRLRPGWGAKEYDE 568
                 *************9888999*************************************998766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3765.70
//
Query:       CDO71118.1  [L=416]
Description: hypothetical protein BN946_scf184844.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-52  179.0   0.0    1.8e-52  178.6   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.0     1e-56   1.8e-52     104     449 ..      43     396 ..      25     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 1e-56
                 HHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCC CS
        p450 104 ptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkyl 201
                 ++l ++ +l  +e+++   + +l++ l+++ ge    +i ++++++ +d+++++++g   +ll+d +  +  ++++e    l  +s  +l + p l +l
  CDO71118.1  43 RALGTS-ALkVYEPMIANRTMQLMRVLEEQPGEV---NIGDFFNYFSYDIMCDVTYGGGSELLRDGDTDNVWHFIDEA---L--PSSTFLSHVPYLGIL 132
                 555555.555799999999999999999999988...9****************************997777777777...3..455679999977777 PP

                 SCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH CS
        p450 202 ptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklr 300
                  +kl   ++ a+++l+++ + +  +r e  ++     +d   + l+++ +  +++   +++l    l  ++aG+dTtss+l+   y+L+++P++ + l+
  CDO71118.1 133 CGKLPM-FRPAMDRLINFSKSVTAKRLERGSTI----KDIF-YYLNNE-DLPEKDPPPERHLLDDSLLAIVAGSDTTSSALTSLVYCLLTHPSALKNLQ 224
                 776655.55577999999988888877665555....4444.445553.444445699***************************************** PP

                 HHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS...CEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS. CS
        p450 301 eEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk...dvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg. 393
                  Eid+    d+++ + ++  +++yl+av++E LRl+p+ p++++ +v++   dv ++ yl+p+Gt+v++++y+l+rdp +f p  e F peR+l ++g 
  CDO71118.1 225 IEIDRFYpADADPCDSKHHREMHYLTAVLNENLRLYPPGPTSTQCRVPHgsdDVMLGSYLVPAGTTVMLPPYTLQRDPRHFsPFTEDFWPERWLVATGe 323
                 *******99999999*************************999999998896777777***************************************** PP

                 .................CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESS CS
        p450 394 .................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppilek 449
                                   +  ++ af+PF+ Gp+ C G++l++ el+ + + lLq+F++ l p+ d ++ ++ 
  CDO71118.1 324 lpladalanapgeadpqTFAHNEAAFIPFSHGPKGCAGKQLGMQELRTVTIALLQKFQLRLRPGWDTKQFDKD 396
                 *****************8889****************************************999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 2326.69
//
Query:       CDO71119.1  [L=396]
Description: hypothetical protein BN946_scf184844.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-47  161.1   0.0    3.8e-45  154.5   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0   0.00062        11      91     150 ..      27      83 ..      23      89 .. 0.87
   2 !  154.5   0.0   2.1e-49   3.8e-45     270     450 ..     165     377 ..     109     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.00062
                 GHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHH CS
        p450  91 ngekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaal 150
                 ++e + + R+  ++++    +l ++e+l+   a++l++ l  ++ge    di +++++++ 
  CDO71119.1  27 DPEVHAERRKPWNRAFKAA-ALkEYEPLIATRASQLIRVLANQHGEI---DIGRFFNYFTA 83 
                 67788899999999**999.8889****************9998887...99999999886 PP

  == domain 2  score: 154.5 bits;  conditional E-value: 2.1e-49
                 HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS...CEEETTEEE-TT-EEE CS
        p450 270 llfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk...dvvirgylipkGtevi 364
                  ++aG+dTtss+l+   ++La++P + ++l+ E+d+   +++++ + ++  +++yl+avi+EtLRl+p+vp+++ R+v++    v ++ +++p Gt ++
  CDO71119.1 165 AIVAGSDTTSSALTSLAFCLATHPAALRRLQAEVDRFYpPGADPCDARHYRDMHYLTAVINETLRLYPPVPSGMHRRVPHsshGVMLGPFFVPGGTSMF 263
                 679***********************************99999999********************************99775566666********** PP

                 EEHHHHHT-TTTS.SSTTS--GGGGB-TTS...........................CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEE CS
        p450 365 vnlyalhrdpevf.pnPeeFdpeRFldekg...........................nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFev 435
                 + +y++hrd  +f p  + F peR+l ++g                            +  ++ af+PF+ Gp nC+G++lA+ e++ ++ +lLq+F++
  CDO71119.1 264 LHPYSMHRDARYFsPFTDGFWPERWLVAEGglplddalkdapdgtmdtaspakvnhvTFTHNDAAFVPFSHGPGNCVGKQLAMQEMRAVVCSLLQKFDL 362
                 *********************************************************8889************************************** PP

                 EESTSTSGGEEESSC CS
        p450 436 elqpetdpppileks 450
                 +l ++ d++  +++ 
  CDO71119.1 363 QLREGWDVQEYDKGF 377
                 *98887777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.52
# Mc/sec: 2306.72
//
Query:       CDO71120.1  [L=99]
Description: hypothetical protein BN946_scf184844.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-05   23.5   0.7    5.6e-05   23.3   0.7    1.2  1  Ndufs5          NADH:ubiquinone oxidoreductase, NDUFS5-15kDa
    0.00026   20.9   3.6    0.00038   20.4   3.6    1.2  1  Cmc1            Cytochrome c oxidase biogenesis protein Cmc1 
     0.0053   16.5   3.4          1    9.2   0.0    2.6  3  PADR1           PADR1 (NUC008) domain
  ------ inclusion threshold ------
      0.023   15.1   5.5       0.18   12.2   5.5    1.8  1  DUF3128         Protein of unknown function (DUF3128)
       0.04   13.3   0.0      0.045   13.2   0.0    1.0  1  Rib_hydrolayse  ADP-ribosyl cyclase
      0.047   14.0   1.3      0.073   13.4   1.3    1.3  1  Pet191_N        Cytochrome c oxidase assembly protein PET191
      0.076   12.2   0.1       0.09   12.0   0.1    1.0  1  FAT             FAT domain
       0.11   12.7   5.2        2.6    8.3   0.6    2.2  2  CHCH            CHCH domain
          1    9.1   5.7       0.38   10.5   3.2    1.5  2  NDUF_B7         NADH-ubiquinone oxidoreductase B18 subunit (N


Domain annotation for each model (and alignments):
>> Ndufs5  NADH:ubiquinone oxidoreductase, NDUFS5-15kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.7   2.8e-08   5.6e-05      30      81 ..      11      59 ..       1      76 [. 0.82

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-08
                --TTHHHHHHHHHHSSSHHHHTTTSTTHHHHHHHHHHHT-HHHHHHHHHHHH CS
      Ndufs5 30 aarchafekewiecahgigktrakkeckiefedfeecllrqktmkrlkeirk 81
                 +rc a+   w e +++  +t    +c+ + ed+ ecl+  k + r+k+i+ 
  CDO71120.1 11 VSRCFAY---WQEFSKCYAQTDVPSQCNAQAEDYLECLHHTKEIARAKAIKA 59
                6788888...555666678999***************************986 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   3.6   1.9e-07   0.00038      12      66 ..      13      64 ..      11      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.9e-07
        Cmc1 12 eCaelikalaeChkdrllkvvgkCneekeamkkClkeyrtderlkdaekdriiek 66
                +C ++ +++ +C +     v  +Cn + e+  +Cl++++  +r  +a k+++i+k
  CDO71120.1 13 RCFAYWQEFSKCYA--QTDVPSQCNAQAEDYLECLHHTKEIARA-KAIKAEFIRK 64
                7999**********..789*********************9999.9999999987 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.7    0.0017       3.5      26      50 ..       7      31 ..       3      33 .. 0.81
   2 !    9.2   0.0   0.00051         1      32      52 ..      33      53 ..      32      54 .. 0.95
   3 ?   -1.8   0.0       1.4   2.8e+03       2      11 ..      77      86 ..      74      87 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
       PADR1 26 fdssgYkCtGnmsewtkCtfktkdp 50
                ++++  +C  + +e++kC  +t+ p
  CDO71120.1  7 YHGGVSRCFAYWQEFSKCYAQTDVP 31
                56666689**********9999876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00051
       PADR1 32 kCtGnmsewtkCtfktkdpkR 52
                +C+ +++++ +C ++tk++ R
  CDO71120.1 33 QCNAQAEDYLECLHHTKEIAR 53
                7******************99 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.4
       PADR1  2 drvaDgmlfG 11
                d +aDg++ G
  CDO71120.1 77 DILADGVIVG 86
                4567777776 PP

>> DUF3128  Protein of unknown function (DUF3128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.5   9.2e-05      0.18      13      74 ..      13      77 ..      11      79 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.2e-05
     DUF3128 13 sCyslggqfkqyYryGel.dnCsekwedfkfClklk..tkksekiq.eilkkrerekkakkkssed 74
                +C++  + f + Y   ++ ++C+ + ed+  Cl +     ++++i+ e+++k e++ ++  ++  d
  CDO71120.1 13 RCFAYWQEFSKCYAQTDVpSQCNAQAEDYLECLHHTkeIARAKAIKaEFIRKAEHQAHEG-RKAAD 77
                799**********99988679*************99554456666524444444444333.55555 PP

>> Rib_hydrolayse  ADP-ribosyl cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.3e-05     0.045      26      91 ..      12      79 ..       6      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
                    S-HHHHHHHHHCCCTTS-...TTS--CGGGHHHHHH------STT-EE--------------------G CS
  Rib_hydrolayse 26 kdceeiweafekavvkkd...pckvteedYdellklasqtvpcdkslfWsktkdlvhsyteatkelltl 91
                    + c + w++f+k +++ d    c+ ++edY e l+ +++ + + k++  +  ++  h+  e +k   +l
      CDO71120.1 12 SRCFAYWQEFSKCYAQTDvpsQCNAQAEDYLECLHHTKE-IARAKAIKAEFIRKAEHQAHEGRKAADIL 79
                    5799*************98778************99887.77777765555555555555555555555 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.3   3.7e-05     0.073      19      54 ..      13      45 ..      11      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
    Pet191_N 19 dCvkkerktpkeClkekaeelpeeCkqlrkayfeCk 54
                +C++   +++++C  ++  ++p++C++  ++y eC 
  CDO71120.1 13 RCFAYW-QEFSKCYAQT--DVPSQCNAQAEDYLECL 45
                566554.6799****99..****************5 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.5e-05      0.09     204     272 ..      12      79 ..       8      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-05
                 HHHSSCCHHHHCCTSSCCCSS-SS---............HHHHCCCTCCCCCCCCCCCT.S...-SSCC CS
         FAT 204 kealqkLreftsellekkeelqsgleaqkeptnleeftkllarcylkkGewqealqkldwseekieeil 272
                 + ++   +ef +++++     q++ +a+ +  ++ + tk++ar+ + k+e+ ++ ++   + +k+ +il
  CDO71120.1  12 SRCFAYWQEFSKCYAQTDVPSQCNAQAE-DYLECLHHTKEIARAKAIKAEFIRKAEHQAHEGRKAADIL 79 
                 56888899*********99999999998.****************************877777777776 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6    0.0013       2.6      14      34 ..       7      26 ..       5      27 .. 0.83
   2 ?    7.2   0.5    0.0029       5.8      16      32 ..      28      44 ..      25      46 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
                HCTSSTTTTHHHHHHHHHHHC CS
        CHCH 14 dnsdefskCrkefeafkeCvk 34
                +++   s C  ++++f +C+ 
  CDO71120.1  7 YHGG-VSRCFAYWQEFSKCYA 26
                5677.899***********75 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0029
                TSSTTTTHHHHHHHHHH CS
        CHCH 16 sdefskCrkefeafkeC 32
                +d  s+C  + e + eC
  CDO71120.1 28 TDVPSQCNAQAEDYLEC 44
                66789************ PP

>> NDUF_B7  NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.2   0.00019      0.38      19      54 ..      13      47 ..      12      57 .. 0.81
   2 ?   -2.5   0.0       2.2   4.4e+03      38      47 ..      62      71 ..      58      76 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
     NDUF_B7 19 yCAhlLiplnkCrrenfplpwkCehekhayekCqye 54
                +C +++ ++ kC  ++  +p +C+ + ++y +C ++
  CDO71120.1 13 RCFAYWQEFSKCYAQTD-VPSQCNAQAEDYLECLHH 47
                69999*******98876.5**************543 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
     NDUF_B7 38 pwkCehekha 47
                + k eh+ h+
  CDO71120.1 62 IRKAEHQAHE 71
                5577888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 639.44
//
Query:       CDO71121.1  [L=293]
Description: hypothetical protein BN946_scf184844.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   56.9   0.0      2e-15   56.3   0.0    1.3  1  ubiquitin  Ubiquitin family
    1.4e-06   28.1   0.0    2.1e-06   27.5   0.0    1.2  1  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
     0.0012   19.2   0.3     0.0024   18.2   0.3    1.6  1  Blt1       Blt1 N-terminal domain
  ------ inclusion threshold ------
      0.092   12.5   0.0       0.14   11.9   0.0    1.2  1  Imm49      Immunity protein 49


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   4.4e-19     2e-15       2      71 ..      66     137 ..      64     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 4.4e-19
                 EEEE.TTSEEEEEEEETTSBHHHHHHHHHHHHT.SSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin   2 tvkt.ldgkkitleveesdtveelKekiaekeg.ipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71 
                 t+k+  + + +tl+v+++dt++++++++a+  g  pa+ qrL+++Gk L d + l+ey ++dg+t++l++++
  CDO71121.1  66 TFKSaKPVQAYTLDVQPTDTISQIMAQLAAVPGaPPADAQRLLLKGKALADAKLLREYAVKDGDTINLMVKP 137
                 56666677899*********************94567889*****************************986 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   4.6e-10   2.1e-06      11      72 .]      74     135 ..      63     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.6e-10
                 --EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  11 kevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 + +++ V+pt t+s+++ +++   g p+ + +rL+ +G+ L + + + ++ ++dgdti +++
  CDO71121.1  74 QAYTLDVQPTDTISQIMAQLAAVPGAPPADAQRLLLKGKALADAKLLREYAVKDGDTINLMV 135
                 478899****************************************************9986 PP

>> Blt1  Blt1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   5.4e-07    0.0024       1     126 [.       9     122 ..       9     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.4e-07
        Blt1   1 FaksflaalDsrpvklsadhveDprsyparvpytLprlskphpempkkvkkaaapgssksitvhlksarnpalelsldnvalattsvkdlkeavqervk 99 
                 F+ksf+++l s+pv  ++d+   p++   rvp +Lp    p pe   +  + a +  + si v+ ksa+ p+   +ld  +  t +++++  ++++   
  CDO71121.1   9 FVKSFVNTLSSQPVIYPNDYQPAPENELKRVP-VLPIDVPPPPE---R--RVAESVPTGSIRVTFKSAK-PVQAYTLDVQP--TDTISQIMAQLAAV-- 96 
                 99*******************99999988888.56754444443...3..3455556678********9.56778998777..66788887777765.. PP

        Blt1 100 eaetkvpldkikiLykkkPvsg.ktlae 126
                       p+d  ++L k k  ++ k l+e
  CDO71121.1  97 --PGAPPADAQRLLLKGKALADaKLLRE 122
                 ..45567888888888888766576666 PP

>> Imm49  Immunity protein 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.14      86     171 ..      64     147 ..      50     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
       Imm49  86 eydyayidalqallddardpdaaeellaaleaalpreaaiaaaegkrldqlatpelrllraLlegDeeaFeeaLeeaLeahrayya 171
                 ++++  ++ +qa+ +d++ +d++ +++a l a++  + a a++    l+++a ++ +llr ++ +D++  +  +  ++++   +++
  CDO71121.1  64 RVTFKSAKPVQAYTLDVQPTDTISQIMAQLAAVPGAPPADAQRLL--LKGKALADAKLLREYAVKDGDTINLMVKPGFDWDPSKVS 147
                 5666677779*********************99888777777777..*********************999998888887655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1919.90
//
Query:       CDO71122.1  [L=768]
Description: hypothetical protein BN946_scf184844.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-94  317.4  40.1    2.3e-94  317.2  40.1    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.2  40.1   1.3e-98   2.3e-94       1     615 [.     108     745 ..     108     746 .. 0.87

  Alignments for each domain:
  == domain 1  score: 317.2 bits;  conditional E-value: 1.3e-98
         OPT   1 elTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk....lslnpgpftikEnvliqtmasaaatlalatglivvipale 95 
                 +lTlRa+++G +lg+++ a+n+y+gl+tg+++   ++ a+ +f+++k l++ lp+      l  gpf +kEn  +q++a aa+++  +  ++++ pal 
  CDO71122.1 108 QLTLRAILVGCVLGAVVGASNIYLGLKTGFTFGPQLFGAIFGFAIIKPLSKALPEsgilGRLFGGPFGPKENCTVQSAATAAGGI--GILFVSAMPAL- 203
                 79********************************************************977889*********************..99999999999. PP

         OPT  96 lygqsag.......fgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee...ksrlkfflivflgsfvwglfplylfpal 184
                  y  +         +g+li+l+ + +++Gv+f++plRk+ ++++kl+fP+  ata  ++alh+++  +    ++   +l+ f+++f++ ++++y   ++
  CDO71122.1 204 -YRLNLLshfpkddIGKLIALTACAGFFGVFFVIPLRKYYIVKQKLTFPTPAATAITIRALHNSRTGAivaRKKSLALLYSFAAVFCFKVLTGYAPGVI 301
                 .555444557899**************************************************998779986666777888**************9888 PP

         OPT 185 ssfswltwiapknvvlanlfglgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvteil 270
                  ++ ++ w++ +   l +   +++ ++ + +++++a+ G g++ +l++  ++++G+vl+wgi++P l + +  + ++++              ++ + +
  CDO71122.1 302 FDWHIG-WTLYR---LGFSGIIQMENYGWFIEFTPAFFGAGMLSGLNASWSFMMGSVLAWGIIAPSLVKNGLAFGQSISdefplvsynglsfSNPEKYT 396
                 888888.66666...2222244444599**************************************8777777777777788899*8888877777777 PP

         OPT 271 dedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykd.vpmwwylallvlslvigiivve 368
                 +    + +  + g+ +ml+ ++v l++ +       +i++ i k+g ++  + +      + +dd++++    ++d vp  w+  +l++s+v++ ++++
  CDO71122.1 397 SAPSPRYWLLWPGILMMLVYSFVDLGMNS------GAIFRNIRKAGINLDVRTWFR---DDLTDDPEDEDLSPRADrVPTLWWTTGLLASIVMACAILA 486
                 77778889999***999999999996554......788888888887777777765...556666555544444445*******************999 PP

         OPT 369 alftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpg.......rpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPra 460
                  +  +++v+  ll+l+l+f+++++++  aG+t++npvs+++k++qlifg + +g       + ++nl++g ++ ++aaq+ d++ DLKtG+ll+a Pr 
  CDO71122.1 487 TM-FSMNVGEALLSLVLGFAFSFIGVQSAGTTDVNPVSTVAKASQLIFGGVGKGaglaqgpAQTMNLTAGVIAAGSAAQSTDMTGDLKTGYLLRAKPRN 584
                 99.89*************************************************8888877699*********************************** PP

         OPT 461 qfvaqliGtlvgavvniavlkllvkaygdict..adasnaftaPqakvfaavavllvggk...kglpwafl.lgavapfilllllkk.fpkkstarklp 552
                 qfvaql G++v++++n++ ++l+ +a + i+    +++  ++aP++  +aavav++  +k   +    ++  + +++++++ +++k  + +k++++ +p
  CDO71122.1 585 QFVAQLCGAVVAIFLNVGLFILFTTASPCILYppDSGECTYSAPSVSAWAAVAVAVTSPKlpiPAS-SGYTaIALAIVAAVSVVVKYlWIPKKYWHWVP 682
                 ****************************99888888999***************777777654222.22332455555555556777799999988779 PP

         OPT 553 lplafavgfylppsl.sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiafl 615
                    a++++f+ p  + ++a+++g+l+ ++w++ r ++ + +y++++aaG+ aGe++ gv+ a+l
  CDO71122.1 683 NWNAVGLAFVTPQVYyAFAMAVGSLFNFFWSR-RSPASFDMYMFAVAAGMLAGEGMGGVLQALL 745
                 9999*9999999877688**************.***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 4603.25
//
Query:       CDO71123.1  [L=394]
Description: hypothetical protein BN946_scf184844.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 2461.55
//
Query:       CDO71124.1  [L=589]
Description: hypothetical protein BN946_scf184844.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3980.79
//
Query:       CDO71125.1  [L=275]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-63  213.0   0.1    5.4e-63  212.7   0.1    1.1  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.7   0.1     3e-67   5.4e-63       1     200 [.      18     222 ..      18     226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 212.7 bits;  conditional E-value: 3e-67
                     XEEEEEEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCSTTB.--SSBEEEETTSEEEEEEES.........SC-.TT--S-EEEEEEE- CS
  Glyco_hydro_61   1 HgvvksltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCnkag.paaavaevkaGdtvtfewke.........kwi.ssHkGpvlvYlakc 84 
                     H+++++l++ng+++   +++vr +   ++n+pvt+v++pd+aCn++  p+++++++ +Gd+vt+e+++         ++i  +H+Gpv+vY+ak+
      CDO71125.1  18 HATFQELWINGVDQ--GSSCVRLP---QSNSPVTSVSTPDLACNADPhPSNGICQIMPGDEVTVEMHQqpndrscanEAIgGNHYGPVIVYMAKV 107
                     99***********6..478***99...899**************8776777889*************97776655543777************** PP

                     SSS-GTTT--GGGCEEEEEEEE-EETE-ST..EHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-S.B. CS
  Glyco_hydro_61  85 asgddcktvdgsglkWfKideegldasakk..WatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgt.al 176
                      +  d++t+ gs++ WfK++e gl +++ +  W t+ l++n+ ++++++P+++apG+Yl+R+E+iALh a+s+ggaQfY+sC+q++V gsg+ + 
      CDO71125.1 108 -E--DATTAVGSSAGWFKVAEIGLPSNN-PdyWGTEVLNDNCGHYTFKVPSNIAPGNYLIRAEVIALHVASSVGGAQFYMSCYQVNVGGSGSaNP 198
                     .3..68999999999*********9665.45*******99999*************************************************554 PP

                     --EEGCCSS-TTSTTTSS-TTTTS CS
  Glyco_hydro_61 177 pevsfpgaykasdpgilvniyees 200
                     p+vs+pgay+a+dpgil+niye  
      CDO71125.1 199 PTVSIPGAYSATDPGILINIYEPL 222
                     57******************9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1986.67
//
Query:       CDO71126.1  [L=83]
Description: hypothetical protein BN946_scf184844.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 581.40
//
Query:       CDO71127.1  [L=339]
Description: hypothetical protein BN946_scf184844.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-28   98.0   0.0    4.1e-28   97.5   0.0    1.3  1  PWI       PWI domain


Domain annotation for each model (and alignments):
>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   2.3e-32   4.1e-28       2      71 ..      48     119 ..      47     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.3e-32
         PWI   2 vlkpWIakkitellgfeDdvvieyvlnlLeee..keldpkklqinltgfLekeaekFvkeLWelllsaqsse 71 
                 v++pWI kk++el+gfeD+vv+ey++ lLe++   ++dp+++qinltgfL +++++F++ LW+lll+aq+s+
  CDO71127.1  48 VIRPWIVKKVVELVGFEDEVVVEYAMGLLEDDsqPTPDPRRMQINLTGFLTNNTPAFMSALWKLLLEAQESP 119
                 89***************************777779***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2418.06
//
Query:       CDO71128.1  [L=380]
Description: hypothetical protein BN946_scf184844.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   61.5   0.0    5.2e-16   59.5   0.0    2.0  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.9e-20   5.2e-16       1     168 [.      93     229 ..      93     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.9e-20
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH...............HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele...............aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalk 84 
                 G G+fAt+ I+kg+++  + e +i+t+ ++  + ++               +y++                                   ++++     
  CDO71128.1  93 GVGLFATRAIAKGSVV--LGEAPIFTQPPPPGRTNStvmaalsqctrdeqrQYFNL----------------------------------TNAY----- 150
                 89**************..77777999999999999955543333333333333333..................................2222..... PP

                 HHHHHXTTTSXXXHCCCCC.HCCCHEEEETEEEEEECCC.......GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  85 asskaesdlnaskpeagaf.saiagysidaralksgnga.......gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                              p +g++  ++a  +++++al+ g +        + +a  lNHsC+pN++ +++   +  r++++A+rdI +GeEl+++Y
  CDO71128.1 151 -----------KAPRPGKReLLPALGIFETNALPCGKARggrragiFLVAARLNHSCQPNVERSWDE--SAQRMTFRALRDIVEGEELCMNY 229
                 ...........2366777777888888999999999999999999999*******************..9********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2545.40
//
Query:       CDO71129.1  [L=421]
Description: hypothetical protein BN946_scf184844.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-48  165.2   0.7    9.4e-40  136.5   0.1    2.1  2  MR_MLE_C  Enolase C-terminal domain-like
    1.4e-22   80.1   0.0    3.5e-22   78.8   0.0    1.7  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.4e-10   2.1e-06       4      80 ..     147     225 ..     144     244 .. 0.83
   2 !  136.5   0.1     1e-43   9.4e-40      79     219 ..     246     391 ..     231     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.4e-10
                 HHHHHHHHHHT-SEEEEETSSS.....HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESS CS
    MR_MLE_C   4 eearelvaeqgfravKlkvggd.....dvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEP 80 
                 + a+e +++qgf+avK++ ++      ++a   + +  vr++   g   d+ +D++++++  +  ++a++le++++l++E  
  CDO71129.1 147 DGAAE-RRAQGFTAVKMNATDAvdwidSPALLQDTISRVRDVKTLGL--DVGIDFHGRLHKGMTKQLAKALEPMKPLFIEGI 225
                 55666.5567********7777*****88888888888888874455..**********************99*******65 PP

  == domain 2  score: 136.5 bits;  conditional E-value: 1e-43
                 SSSSTTTHHHHHHHHHHHH.SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTB CS
    MR_MLE_C  79 EPvppeddleglaelrara.sipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnl 176
                 EP+ p  ++e++a+l+    s+pia+gE+lysr+dfr++le++a+di+qpdv+++gGi+e+ ++a   e+++v +apH++ g+++laa++++ +a+pn+
  CDO71129.1 246 EPLLP-TQVEEIADLA-HMvSTPIALGERLYSRHDFRPYLERRAIDIAQPDVAHCGGISELHRLASYTETYDVALAPHCPLGPIALAACMQVDIAAPNF 342
                 89999.67********.66799*********************************************************889***************** PP

                 EEEEEEGGGGH......TSGCSBSSSSEEETTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 177 lileyfldael......leeelleeplevedGrvtvpdgpGlGveldee 219
                  i+e++l  ++      l++ + +  ++v++G+v++ +gpGlG+e++e+
  CDO71129.1 343 FIQEMSLQMHYnegadlLTYLVDPTVFTVKNGYVEALQGPGLGIEINEQ 391
                 **********************************************986 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   3.9e-26   3.5e-22      28     117 .]      32     124 ..      28     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 3.9e-26
                 EEEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS.....CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  28 lvlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg.....nmsAkaaidmAlwDlkakalnlpladLlG 117
                   +v++et+ G+vG+ge+t++g   e+i+ + +d l +  +g da++i+d++q ++r  ++      msA +++d+AlwD+k+k+ ++p+++LlG
  CDO71129.1  32 WLFVRVETELGIVGWGEGTLEG-HTEAIEGAYKD-LTERFIGWDADRIQDIWQHAYRSRFYrggpvLMSALSGLDIALWDIKGKRYGVPIWQLLG 124
                 568*******************.9******9998.***********************99999*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2993.74
//
Query:       CDO71130.1  [L=301]
Description: hypothetical protein BN946_scf184844.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   53.6   0.0    4.1e-13   50.1   0.0    2.2  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   2.3e-17   4.1e-13       1     169 []      14     150 ..      14     150 .. 0.64

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 2.3e-17
                 SCEEEESSXBXTTXEEE..........EEEECCEECHHHHHHHHHH.HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHH CS
                 xxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgefic..........eypeeiiltkdeadksele.aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkassk 88 
                 G G++A++ I +ge+i+          +y   +il+   ++ ++++ +y+  ++                                      a+k   +
  CDO71130.1  14 GKGLVASRAISRGELILseapliqqdrSYSNASILRALAPVSEQQQrEYFSLAN--------------------------------------AHKGNRS 74 
                 88**************63222222222244444444444444444454444444......................................3333222 PP

                 HXTTTSXXXHCCCCCHCCCHEE.EETEEEEEECCC............GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  89 aesdlnaskpeagafsaiagys.idaralksgnga............gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                     l                  ++++al+ g+++            + l++ +N sC+pN+n ++++  +  ++++ AtrdI+ GeEl+i+Yg
  CDO71130.1  75 IPPPL----------------GiFKTNALPCGDHSvlegsaathaavFVLGSRFNSSCEPNVNNYWDA--NLQKITFWATRDIAIGEELCISYG 150
                 22222................1244445555555555555556666888*******************..9**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1925.49
//
Query:       CDO71131.1  [L=239]
Description: hypothetical protein BN946_scf184845.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-11   42.0   0.0    1.7e-10   41.2   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    4.9e-08   33.2   0.0    9.4e-08   32.3   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
      2e-07   31.2   0.1    5.3e-07   29.9   0.1    1.7  1  GST_N     Glutathione S-transferase, N-terminal domain
    0.00022   21.2   0.2    0.00045   20.2   0.2    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   3.8e-14   1.7e-10       2      73 ..      10      94 ..       9      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.8e-14
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHH.HHH-TT--SSEEETTS-............EEESHHHHHHHHHHHH-G CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgehdeel.laknplgkvPvLeddge............altdSlaIidyLeelypg 73
                y+ paS+y+ rv +aL+e + +++ +ev+  +++ ++  ++np gk+P+++ +g             ++ +Sl I+++L + +p+
  CDO71131.1 10 YSHPASVYSHRVEIALKEAKADYTNYEVDLANKPSWYaARVNPVGKLPAITYGGPntapddpspeaaKINESLIILEFLADIFPE 94
                899**********************************56667********76655557777888888************999986 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.1e-11   9.4e-08       1      69 [.      14      90 ..      14      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.1e-11
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHH.HHHCTTTSSSEEE-...........CTTEEEESHHHHHHHHHH CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfekseef.prlnprgtVPvLwd...........kdgqvineSseIlrylet 69
                a+ ++hRv ial++ + +++  +v    +  +k++++  r+np g++P++             +++  ineS+ Il++l++
  CDO71131.1 14 ASVYSHRVEIALKEAKADYTNYEV----DLANKPSWYaARVNPVGKLPAITYggpntapddpsPEAAKINESLIILEFLAD 90
                699*********************....456677777469************998888776655666***********986 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.2e-10   5.3e-07       2      75 ..       6      89 ..       5      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.2e-10
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHH.HHCTTS-SSEEEET............TEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspell.klnplgkvPaLedn............gkkltESraIleYia 75
                ++t ys++ s ++hr++++l++++++y   ++d+   ++k+++++ ++np gk+Pa   +              k+ ES +Ile++a
  CDO71131.1  6 QITFYSHPASVYSHRVEIALKEAKADYTNYEVDL---ANKPSWYAaRVNPVGKLPAITYGgpntapddpspeAAKINESLIILEFLA 89
                6899*****************************9...56667775257888******999999999999999999*******99998 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2     1e-07   0.00045       7      57 ..     134     196 ..     105     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1e-07
                 HHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-.............--- CS
     GST_C_2   7 aleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf.............dir 57 
                 a ++l + l+ ++++L     ++ ++++ aDia+apfl+r+ra  ++              +i 
  CDO71131.1 134 ADQTLLNLLESVQERLHPTG-FAIGKWSNADIAVAPFLFRFRAMLRHDlgsfpvgegtrvyEIL 196
                 5688999**********998.7889*****************9965323445555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1529.76
//
Query:       CDO71132.1  [L=347]
Description: hypothetical protein BN946_scf184845.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-73  247.4   0.0    2.1e-73  247.1   0.0    1.1  1  ATP_bind_1  Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
       0.14   12.3   0.2       0.59   10.3   0.0    2.1  2  AAA_33      AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   0.0   2.3e-77   2.1e-73       1     239 [.       7     244 ..       7     246 .. 0.97

  Alignments for each domain:
  == domain 1  score: 247.1 bits;  conditional E-value: 2.3e-77
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeeleke.eddyllfDt 98 
                 v+G +GsGK+t++    +++++ +r++ +vNLDPA+e++pY++a+di  li+ledvm++ glgpng++ +++e+l+ + dwl+++l++  +d+y+lfD 
  CDO71132.1   7 VCGSPGSGKSTYCYGKHQLFTALNRPISIVNLDPANENIPYPCAIDISSLIKLEDVMNEFGLGPNGGMLYCMEYLEANYDWLEDRLKELdKDEYILFDL 105
                 89************************************************************************************9996669****** PP

  ATP_bind_1  99 PGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..lekeleffedvealslllekee. 194
                 PGQ+el t ++sl++i+++L+      +v+L D++++td++k++s l+++l+aml+lelPh++v++k+Dl+ ++  l+++l+f+++v++ls+l+++ + 
  CDO71132.1 106 PGQVELSTNHPSLKNIIHQLA------AVHLCDAHYVTDASKYVSVLMLSLRAMLHLELPHINVFSKVDLITQYgdLDFNLDFYTEVQDLSYLQNLLNq 198
                 *****************9999......7********************************************99*9****************9999988 PP

  ATP_bind_1 195 ..ekykklaeaiaelleefalvlrflplssekeesiedllslideal 239
                    +y+ l+ +i++l+e+++lv  f +l++e++es+  l+++id+a+
  CDO71132.1 199 qsPRYAALNMQICSLVEDYGLV-GFETLAVEDKESMLHLTRVIDKAT 244
                 88999*****************.*********************997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.6e-05      0.59       3      16 ..       6      19 ..       6      53 .. 0.86
   2 ?   -2.1   0.4      0.45     4e+03      87     121 ..     298     336 ..     290     345 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.6e-05
      AAA_33  3 llvGlpGsGKstla 16
                +++G pGsGKst+ 
  CDO71132.1  6 VVCGSPGSGKSTYC 19
                58**********86 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
      AAA_33  87 rflklarrlgvpvrivv....vetdeetlkeRlakRaan 121
                 r++ + +++++ +++ +    +++ e+ ++++ + R++n
  CDO71132.1 298 RWIDAREEYDAWEKAQWrkegLKVQEAAARQKAKIRERN 336
                 555555555555555552222345555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2245.92
//
Query:       CDO71133.1  [L=740]
Description: hypothetical protein BN946_scf184845.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-14   53.5   0.0    5.4e-14   52.3   0.0    1.6  1  DEAD          DEAD/DEAH box helicase
    7.2e-10   39.5   1.1    7.2e-10   39.5   1.1    2.4  2  RecQ_Zn_bind  RecQ zinc-binding
    1.1e-07   32.2   0.0    1.4e-06   28.6   0.0    2.4  2  Helicase_C    Helicase conserved C-terminal domain
     0.0044   17.1   0.0      0.011   15.8   0.0    1.8  1  ResIII        Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
        1.3    8.9   3.6          3    7.7   3.6    1.5  1  DivIC         Septum formation initiator


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.5e-17   5.4e-14       4     170 ..     103     271 ..     100     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.5e-17
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl........ 94 
                 Q+ ++++ ++g+d+++ ++TG GK+l +++p+l  v          +++++P+ +L+ +++ +l +    +    ++ ++g + +d+  ++        
  CDO71133.1 103 QEGICNASMDGRDIVGIMPTGGGKSLGYQLPAL-MV-------SGCTIVISPLLSLIADQIMHLHEADIDA----VM-LTGATPKDESMRIyrrlqema 188
                 888899999************************.33.......3578*****************9987742....22.223333333333333335555 PP

                 ...HTT..CSEEEEEHHHHHHHH.....HCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 ...xxx..xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 ...dng..vdivvgtpgrlddll.....stgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                    +n   +++ + tp+++++        ++  +++++  +V+DEa+++++q  +f++++++ l+ l+q   + +    +++lSAT p
  CDO71133.1 189 sgaSNApdLKLCYVTPEKIAKSKtftsaLEKLYRVNKLARFVIDEAHCVSQQghDFRPDYQK-LSILRQLFPNVP----ILALSATCP 271
                 5432336799**********96666654334455999999************999*******.899989999988....*******98 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       2.5   8.9e+03      39      39 ..      47      47 ..      20     107 .. 0.60
   2 !   39.5   1.1     2e-13   7.2e-10       2      65 ..     395     464 ..     394     465 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
  RecQ_Zn_bind 39 t 39
                  +
    CDO71133.1 47 R 47
                  1 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 2e-13
  RecQ_Zn_bind   2 qDvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaee.............eCgnCDnC 65 
                   qD+ r++++           ++  ek+ +ml+++++ +eCr+ ++++yF e++  +             +Cg+CDnC
    CDO71133.1 395 QDATRIASMTC-------GDHNGKEKVLSMLKFASDLEECRKIQFARYFSESSNLSinswetaeegaltRCGHCDNC 464
                   67777777763.......234556899**********************986444466666677778889******* PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.22   7.9e+02      16      63 ..     138     185 ..     130     193 .. 0.72
   2 !   28.6   0.0     4e-10   1.4e-06      37     110 ..     309     382 ..     293     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.22
                 TSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH CS
  Helicase_C  16 ggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn 63 
                  g ++++++  + + + +   l++ +i +++l+g +p++e  +i ++ +
  CDO71133.1 138 SGCTIVISPLLSLIADqIMH-LHEADIDAVMLTGATPKDESMRIYRRLQ 185
                 56677777777755322222.34558**************999998875 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 4e-10
                 HHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  37 ekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 ek+  +i + v+h+++  n +++  eq+++g+++v+ at + + Gid  +v++V +    ++++ + q +GR+gR 
  CDO71133.1 309 EKSdrKILTGVYHADIRDNVKQRLHEQWRNGKVKVVCATIAFGLGIDKGDVRFVLHH--TKSLDGFYQESGRAGRD 382
                 4444589999********************************************876..57899***********6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06     0.011      30     169 ..     119     270 ..      29     272 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-06
                 EESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH........HHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH. CS
      ResIII  30 kmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl........eefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadse 119
                  m+TG GK+l +   +  ++       ++++ p +sl+   +        ++++ +  ++++e + +++  +++a  ++++ + k++ +t +++ ++++
  CDO71133.1 119 IMPTGGGKSLGYQLPALMVSG-----CTIVISPLLSLIADQImhlheadiDAVMLTGATPKDESMRIYRRLQEMAsGASNAPDLKLCYVTPEKIAKSKT 212
                 567777776655333333333.....34455555544444441222222244444555554444445444444444455566999999**********8 PP

                 .......HHHTTT-SEEEEETGGGTTS......TTTHHH...HHT---SEEEEEESS- CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak.....kswrei...lekfkeavllglTATp 169
                  ++  ++ ++ ++   ++iDEaH ++++       ++++    + f++  +l+l+AT+
  CDO71133.1 213 FTSALEKLYRVNKLARFVIDEAHCVSQQghdfrPDYQKLsilRQLFPNVPILALSATC 270
                 8899***********************9765554888855557788999********8 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.6   0.00083         3      18      52 ..      25      58 ..      19      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00083
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLks 52
                 + + k ++a+l a +++l +e+++L  e+++  +
  CDO71133.1 25 EIEEAKVQRAQLDALIKTLEQERQDLLNEIRNT-Q 58
                6778899************************98.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 4534.75
//
Query:       CDO71134.1  [L=578]
Description: hypothetical protein BN946_scf184845.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3836.51
//
Query:       CDO71135.1  [L=1424]
Description: hypothetical protein BN946_scf184845.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-76  255.7   0.0    1.5e-75  254.5   0.0    1.6  2  CPSF_A    CPSF A subunit region
    7.9e-14   51.2   0.0    1.4e-13   50.4   0.0    1.3  1  MMS1_N    Mono-functional DNA-alkylating methyl methanesulfon


Domain annotation for each model (and alignments):
>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.55   4.9e+03      74      99 ..     107     139 ..      81     141 .. 0.75
   2 !  254.5   0.0   1.7e-79   1.5e-75       2     322 .]    1065    1393 ..    1064    1393 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.55
                 -.......SS--EEEEEEEEEEEES----EEEE CS
      CPSF_A  74 v.......petnrkLklvhkeevkgavtalaef 99 
                 +       p t +k+ l+ ++++ g+vt ++ +
  CDO71135.1 107 TgqngvpqPATVQKFYLIREHRLHGTVTGMEAI 139
                 4555666688999**************999876 PP

  == domain 2  score: 254.5 bits;  conditional E-value: 1.7e-79
                  -EEEEE-T..TT-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEEEE---SSS--E.EEEEEEEEEE-..........SS--EEEEEEEEEE CS
      CPSF_A    2 ssiklvdpiskeeidsleLeenEavlsvksvelessettkekkellvVGtafnlgedpaarsGrilvfeiiev..........petnrkLklvhkee 88  
                  s+++l++p  + ++d +e+ +nE v +++sv le  +t+++ k++++VGt++n+ged+a + G +++fei ev               +Lkl+ +++
  CDO71135.1 1065 STLELISPDGWITMDGYEFAPNEFVNCIASVPLETVSTESGMKDFIAVGTTINRGEDLAVK-GAVYIFEIVEVvpdpsasikrW---WRLKLLCRDD 1157
                  6899****888899********************************************999.***************9997633...6********* PP

                  EES----EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS-EEEEEEETTEEEEEESSS-EEEEEE-SSS--EEEEEEESS---EEEEEEE-- CS
      CPSF_A   89 vkgavtalaefqGrllvgvgqkvrvydlgedktLlrkafldtqlyvvslkvlgnriivgDlmkSvtfveydeenyklilfardtqkrwvtaaeflvd 185 
                   kg+v+ l+++ G+l+ ++gqk+ v+ ++ d+ L+++afld+++yv+sl +++n++++gD++kSv+fv ++e++ykl+++++d ++  +t+a++   
  CDO71135.1 1158 AKGPVSYLCGMDGYLVSSMGQKIFVRAFDLDERLVGVAFLDVGVYVTSLRAVKNLLVIGDAVKSVWFVAFQEDPYKLVILGKDPHHCCITKADLFFA 1254
                  *********************************************************************************************9999 PP

                  SSS.EEEEEETTSEEEEEE--TTSGGGTTTT.EEEEEEEEE-SS----E...EEEE......SSS--S-EEEEEE-TTS-EEEEEE.--HHHHHHHH CS
      CPSF_A  186 ged.tvlvaDkfgnlfvlrydpeasessdgdprleeraefhlgeivtslrkgslvp.....geaesssspqllyatldGsigllvPliseeeyrrlq 276 
                  +++ +++ +D++g + ++ ydp+++es  g+ +l++r+efh ++   s+    l++     g++e+  + +l+++++dGs+ +l+  ++e++++rl+
  CDO71135.1 1255 DGHlSIVTCDEEGIVRMYAYDPHDPESKGGQ-HLLRRTEFHGQTEYRSS---LLIArrpkhGDPEI-PQARLVCGSVDGSLSTLTY-VDEAAFKRLH 1345
                  99*****************************.*********99888888...56665667555554.69*************9999.********** PP

                  HHHHHHHHHS--SSS--HHHHS---....----.---EEHHHHHHHHH CS
      CPSF_A  277 aLqqqLrkelkhlgGldhrafRsyysp..kseevkgviDgdllerfld 322 
                   Lq qL ++++h++ l+++afR ++++  +++ +kg++Dg+ll  f+d
  CDO71135.1 1346 LLQGQLIRTVQHVAALNPKAFRMVRNEyvSRPLSKGILDGNLLATFED 1393
                  **************************9855556***********9975 PP

>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.5e-17   1.4e-13       1     360 [.     150     587 ..     150     594 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.5e-17
      MMS1_N   1 DlLvvgsdsgelvflsynpeknqfetvhshetlgk..sgs..rrsqpGqylavDPkgraiavsayekvflvyslkk....keilnr...ealllssple 88 
                 D L+v+ +  ++ +l++++  +++ tv   +t+ +  + +  +   +   l vDP +r+ a+s+ ++ + + ++ +      +l++   +a++   p +
  CDO71135.1 150 DRLLVSFKDAKVALLEWSNAIHDVLTVS-IHTYERapQLMtlDSALFRADLRVDPLSRCAALSLPKDALAILPFYQsqaeLDLLEQessQARD--VPYS 245
                 5688999999999*******99988887.554443113330034457899***********************99976662233333333333..4444 PP

      MMS1_N  89 a..........rksegvilsmvFldpgykeednpiialleqdrrg..........kteltlyewdlglnlvrkisktsepkknldsganlLiplpkpgg 167
                             +    +++ +Fl pg++   np+ia+l q ++           ++ l ++++dl +n+  +i+   e    l+     L p    +g
  CDO71135.1 246 PsfildlandvDRRIRNVIDYAFL-PGFN---NPTIAVLCQYQQTwtgrlkeykdTVGLFIFTLDLVTNNYPVITA-VEG---LPYDCFSLTPCSTATG 336
                 35557778888889999*******.***7...9*******877777788888887999999999999998888665.355...7888889999999544 PP

      MMS1_N 168 .vlVcgetiitykdildqedirkk............swarPrrekatn...........fv.awekldsfffllatedGdLylleiekdedsgkvvtsi 241
                  v++ + ++i+  d+ +                    +++P +  +++           f+ +  k+   f++l +  G +  +e+  + d gk+v+ +
  CDO71135.1 337 gVVILAGNAIVFVDQSSRR----VilpvngwlqrtsDIPVPSSLTPQEqlrdlqlegarFTfVDDKTL--FIILKD--GTVIPVEL--VLD-GKTVSRL 424
                 5*******99999994422....245556777776645555555444488888888877554555555..888888..********..777.5789999 PP

      MMS1_N 242 slky.fdtvsvasalvilksgfLfvasefGdgqlyqieargedd..............................................knleliqtl 293
                 s++  +  +   +     ++ +Lf++s  G + l++ ++ +e +                                               +l+l + +
  CDO71135.1 425 SMSDaVARTTMPAVVKRVENEHLFIGSIVGPSVLLKTAHVEE-EiteddtemssppatavapvdtmdldddeaangvsngvtdtvkkrtvVRLSLCDAI 522
                 988867888889999999*******************99865.46999******************************************9******** PP

      MMS1_N 294 dNlaPilDfkvv..kesdlasegqdqiytcsGagkrgsLrelRsGieveelavseepgspitgvWtlkl 360
                 + ++P+ D++    +++d      +++++++G+g+ g +  ++  ++++   +++  g + +g+W+l  
  CDO71135.1 523 PAHGPLSDISFGvaRNGD---RAVPELVAATGSGELGGFHLFQRDMPTRTKRKLHAIGGG-RGMWSLAV 587
                 ********9987545555...456***********************************9.*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 9802.68
//
Query:       CDO71136.1  [L=226]
Description: hypothetical protein BN946_scf184845.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-07   29.3   0.2    1.7e-06   28.3   0.0    1.5  2  GST_N_3          Glutathione S-transferase, N-terminal domain
    0.00019   21.7   0.1    0.00048   20.4   0.1    1.7  1  GST_N_2          Glutathione S-transferase, N-terminal domain
    0.00063   19.7   0.1     0.0017   18.3   0.0    1.8  2  GST_C_2          Glutathione S-transferase, C-terminal domain
     0.0008   19.7   0.0     0.0025   18.1   0.0    1.9  1  GST_N            Glutathione S-transferase, N-terminal domain
     0.0089   16.2   0.3      0.077   13.2   0.1    2.5  3  Glutaredoxin     Glutaredoxin
     0.0096   16.5   0.0      0.019   15.5   0.0    1.5  1  GST_C_5          Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.039   14.2   0.1       0.16   12.2   0.0    2.0  3  GST_C            Glutathione S-transferase, C-terminal domain
       0.13   12.1   0.0        0.3   10.9   0.0    1.7  1  Glutaredoxin2_C  Glutaredoxin 2, C terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.6e-10   1.7e-06       1      73 [.       7      82 ..       7      84 .. 0.91
   2 ?   -3.7   0.0       7.4   1.6e+04       8      17 ..     154     163 ..     152     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 7.6e-10
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-.TT--SSEEETT..S-EEESHHHHHHHHHHHH-G CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellakn.plgkvPvLedd..gealtdSlaIidyLeelypg 73
                Ly ++ +pya rv +aL e + +++ +e++ ++++e+ ++ +  ++++P  ++     +l +Sl++++++ + +p+
  CDO71136.1  7 LYTAKICPYAHRVEIALAEAKAQFTRYEIDLQNKPEWCPPSRtVAQTFPQTTPSpeSVKLAESLVLVEFVADIFPE 82
                99************************************887779*******9654466***********9999987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.4
                 HHHHHHHHHH CS
     GST_N_3   8 pyarrvrlaL 17 
                 p+  r+rlaL
  CDO71136.1 154 PFLARARLAL 163
                 7889999998 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   2.1e-07   0.00048       1      36 [.      12      43 ..      12      79 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.1e-07
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHH CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfeksee 36
                +CP+ahRv iala+ + +++  +++l +k++    +
  CDO71136.1 12 ICPYAHRVEIALAEAKAQFTRYEIDLQNKPE----W 43
                6*******************99995544443....3 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.8e-07    0.0017      11      50 ..     124     162 ..     116     183 .. 0.81
   2 ?   -2.7   0.0       2.8   6.3e+03       1      15 [.     209     223 ..     209     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.8e-07
                 CCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHH CS
     GST_C_2  11 ldaaldaleahLadspflfGdqptlaDialapflvrlraa 50 
                 l +al+ l+++L     +  +++++aDia +pfl r+r a
  CDO71136.1 124 LYSALEYLQSLLPAEG-FVVGEFSIADIAITPFLARARLA 162
                 5678999999999888.6669****************998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
                 HHHHCHHHHHCCHCH CS
     GST_C_2   1 eaaveraleqldaal 15 
                 ea v++al++l+a l
  CDO71136.1 209 EAHVTEALQKLFANL 223
                 578889999998877 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0025       3      47 ..       5      45 ..       3      78 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellk 47
                +tly++  +p+ahr++++la++++++   ++d++    ++pe++ 
  CDO71136.1  5 ITLYTAKICPYAHRVEIALAEAKAQFTRYEIDLQ----NKPEWCP 45
                89******************************93....4588875 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   3.4e-05     0.077       1      34 [.       5      38 ..       5      57 .. 0.85
   2 ?    0.3   0.0      0.37   8.2e+02       8      30 ..      43      65 ..      39      78 .. 0.75
   3 ?   -1.6   0.0       1.5   3.3e+03      15      33 ..     194     214 ..     192     224 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCS CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkd 34
                  ++l+t + Cpy +++  +L e +++f+ +++d  
    CDO71136.1  5 ITLYTAKICPYAHRVEIALAEAKAQFTRYEIDLQ 38
                  799***********************99999865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.37
                  SSHHHHHHHHHHHHTTGGEEEEE CS
  Glutaredoxin  8 tCpyCkkakrlLkelgvkfeeid 30
                  +Cp ++ + +++ +   + e + 
    CDO71136.1 43 WCPPSRTVAQTFPQTTPSPESVK 65
                  89999999998866665555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
                   HHHHH..HHTTGGEEEEEGCC CS
  Glutaredoxin  15 akrlL..kelgvkfeeidvdk 33 
                   ak+l+  ++++v f+e  v++
    CDO71136.1 194 AKDLFarESFKVTFDEAHVTE 214
                   566665567778888877776 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.4e-06     0.019       5      78 ..      98     164 ..      94     171 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.4e-06
                 HHHHHHH.HHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHCCHTSSSSECCECC--HHHHHHHHHHHHHHHHCC CS
     GST_C_5   5 ffleevG.dlvgalfglvrdplseekrkelddnaayledllakhqgeGPyfldkelsmadvavvPflvrlkavls 78 
                 ff+e v  +l+ a +g++ +       ++l  +  yl+ ll   ++eG  f+ +e+s+ad+a+ Pfl+r++ +l 
  CDO71136.1  98 FFIEGVSsKLIPAWYGFLLRN---APVEDLYSALEYLQSLL---PAEG--FVVGEFSIADIAITPFLARARLALI 164
                 566555324666666666555...22233334444444444...4555..78899***************98876 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.1   6.9e+03      24      43 ..      19      38 ..       9      43 .. 0.69
   2 ?   12.2   0.0   7.1e-05      0.16      30      67 ..     123     159 ..     117     172 .. 0.85
   3 ?   -2.2   0.0       2.2   4.9e+03      17      33 ..     199     221 ..     178     224 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHHHHHHHH CS
       GST_C 24 vdealekvaevlsaleeelk 43
                v++al + ++++ ++e  l 
  CDO71136.1 19 VEIALAEAKAQFTRYEIDLQ 38
                55666777777777776665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHH CS
       GST_C  30 kvaevlsaleeelkkqdylvGdkltlADialvpilnwl 67 
                  ++ +l++l   l  ++++vG+ +++ADia++p+l ++
  CDO71136.1 123 DLYSALEYLQSLLPAEGFVVGE-FSIADIAITPFLARA 159
                 5678899999999999**9996.9**********9865 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.2
                 H......HHHHHHHHHHHHHHHH CS
       GST_C  17 e......ekkeelvdealekvae 33 
                 +      +++e+ v eal+k+++
  CDO71136.1 199 AresfkvTFDEAHVTEALQKLFA 221
                 03344556677777777776655 PP

>> Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013       0.3      60      96 ..     121     157 ..      93     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
  Glutaredoxin2_C  60 iaelnalLeelepliksseavngelSvdDillfpiLr 96 
                      +++l + Le l++l+ ++  v ge+S++Di ++p+L 
       CDO71136.1 121 VEDLYSALEYLQSLLPAEGFVVGEFSIADIAITPFLA 157
                      6778899****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1541.67
//
Query:       CDO71137.1  [L=682]
Description: hypothetical protein BN946_scf184845.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-07   29.5   6.1      3e-06   27.2   6.1    2.0  1  bZIP_1        bZIP transcription factor
    3.4e-06   27.0   9.8    3.8e-05   23.7   4.3    2.4  2  bZIP_2        Basic region leucine zipper
  ------ inclusion threshold ------
       0.16   12.9   0.7       0.35   11.9   0.7    1.5  1  RAC_head      Ribosome-associated complex head domain
       0.17   12.2   0.4       0.73   10.1   0.1    2.1  2  Catalase-rel  Catalase-related immune-responsive
        4.6    7.3   6.5       0.27   11.2   0.8    1.9  2  TMF_DNA_bd    TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   6.1   8.3e-10     3e-06       6      63 ..     241     298 ..     236     306 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 8.3e-10
                 XXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   6 rekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 +ekr ++N+++Ar +R R++++i+ Le   ++ +    + + el++ k+e+  L++++
  CDO71137.1 241 KEKRQLRNKISARNFRIRRKEYIATLEGDIAERDRLIDAIRTELGSTKNENVALRQEI 298
                 8**************************9999988888888888888888888888775 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   4.3   1.1e-08   3.8e-05       4      54 .]     239     290 ..     236     290 .. 0.92
   2 !    8.3   0.5   0.00068       2.5      34      53 ..     284     303 ..     282     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.1e-08
                 XXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   4 eyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLeke 54 
                 +++e+R  +N ++ar++R ++k++ + le  + e  + ++++r ++ + ++e
  CDO71137.1 239 SSKEKRQlRNKISARNFRIRRKEYIATLEGDIAERDRLIDAIRTELGSTKNE 290
                 6899***************************************999877765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00068
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  34 vkeLeeeNaqLrqkveqLek 53 
                 + + ++eN +Lrq+++qL+k
  CDO71137.1 284 LGSTKNENVALRQEIAQLKK 303
                 566799************97 PP

>> RAC_head  Ribosome-associated complex head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   9.6e-05      0.35       5      77 ..     233     304 ..     231     312 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
                 XXXX-HHHHHHHHHHHHHHHTGGGSSSS--.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHTT---HHHHHHH CS
    RAC_head   5 eaaKkalKKekralrgavkdanYFadgeaekakvidkvLedvdllieklddeeLaelaekleaakdaeevkav 77 
                 e+ Kk+  Kekr+lr+ +   n+    ++e  ++ +  +++ d+li+ +  e  ++ +e+++  ++ ++ k++
  CDO71137.1 233 EEYKKMSSKEKRQLRNKISARNFR-IRRKEYIATLEGDIAERDRLIDAIRTELGSTKNENVALRQEIAQLKKA 304
                 788****************99976.5555558999999*********99977666666666666666666665 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.66   2.4e+03      15      31 ..     235     251 ..     224     256 .. 0.83
   2 ?   10.1   0.1    0.0002      0.73      21      46 ..     271     296 ..     269     304 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.66
                   HHHS-HHHHHHHHHHHH CS
  Catalase-rel  15 yrsmseeekerlvnnia 31 
                   y+ ms +ek++l n i+
    CDO71137.1 235 YKKMSSKEKRQLRNKIS 251
                   899********999886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0002
                   HHHHHHHHHHHHHHTTSS-HHHHHHH CS
  Catalase-rel  21 eekerlvnniafelskvedeeiqerq 46 
                   +e++rl+++i++el+  ++e++  rq
    CDO71137.1 271 AERDRLIDAIRTELGSTKNENVALRQ 296
                   79****************99999887 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6       1.6   5.6e+03      23      56 ..     237     250 ..     233     254 .. 0.48
   2 ?   11.2   0.8   7.7e-05      0.27       3      42 ..     266     305 ..     264     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
  TMF_DNA_bd  23 kLskkelklnntikkLrkknkelekeikelkkkl 56 
                 k                    ++ ke ++l +k+
  CDO71137.1 237 K--------------------MSSKEKRQLRNKI 250
                 3....................3444444444444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.7e-05
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekLskkelklnntikkLrkkn 42 
                 le +++e+D  I++ ++E+   + ++++l++ i +L+k +
  CDO71137.1 266 LEGDIAERDRLIDAIRTELGSTKNENVALRQEIAQLKKAL 305
                 6789*********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4665.76
//
Query:       CDO71138.1  [L=617]
Description: hypothetical protein BN946_scf184845.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-16   59.7   4.0    9.6e-16   57.8   4.0    2.0  1  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
      0.066   12.9  18.9        2.6    7.7  18.9    3.3  1  PAP2_3    PAP2 superfamily
       0.18   11.5   0.1       0.38   10.4   0.1    1.5  1  BNIP3     BNIP3


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   4.0   1.6e-19   9.6e-16       4     126 ..     185     337 ..     182     343 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.6e-19
        PAP2   4 alllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkig................... 83 
                  lll+la  +++ts++Kdl+  pRP++  +   + +++  +         ++fPS+Hs++++++al+++ l++r++ +                     
  CDO71138.1 185 GLLLMLAEGVYVTSFMKDLFCCPRPYAPPVSRLTLGSHHLE---------YGFPSTHSTNSVSIALFIYTLVQRLYTPPVsaavktavntaastlnasn 274
                 68999999************************999996543.........69************************99669****************** PP

        PAP2  84 ....................lvllalillllavlvalsRlylgvHflsDvlaGlliGialaal 126
                                     + ll+ +l+++++ + ++Rly  +H ++D++aG++iG+ ++ l
  CDO71138.1 275 rilpsteaivetegvissttYGLLIGLLVFYVFSIVYGRLYTAMHSFTDCIAGMAIGAGIWGL 337
                 ********************99************************************99876 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  18.9   0.00043       2.6      13     189 ..     137     336 ..     132     337 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00043
      PAP2_3  13 dweaalnklllahpalavilala..YaslhfqvtllvlvllflrrrerlreflttlllatllgllvyalfPaagP......rll.....eeagfvdtva 98 
                 +w aa++    +hpal++++ ++    + +f++++l+l++ f+  re +r +l++l+  + +++++  lf + +P      rl       e+gf++t++
  CDO71138.1 137 QWLAAMQ-HRVRHPALDRYFVYTstLGTHTFFMVMLPLFH-FFGAREFGRGLLLMLAEGVYVTSFMKDLFCCPRPyappvsRLTlgshhLEYGFPSTHS 233
                 6777777.66679999998888766777778888888888.5688888888888888888888888888888888555566333666667788888888 PP

      PAP2_3  99 aaslag............alrdgasravllrgtienglaa........fPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDv 177
                 ++s++             +        +++ +t  n  a+        +PS  +++ +  ++         ll  l++++++ +++  ++t+ H ++D+
  CDO71138.1 234 TNSVSIalfiytlvqrlyT-----PPVSAAVKTAVNTAAStlnasnriLPSTEAIVETEGVIS---STTYGLLIGLLVFYVFSIVYGRLYTAMHSFTDC 324
                 8877778999888554441.....333333333333333345556777****99999987777...444457899************************ PP

      PAP2_3 178 iaGvalalvaia 189
                 iaG+a++++++ 
  CDO71138.1 325 IAGMAIGAGIWG 336
                 ********9997 PP

>> BNIP3  BNIP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   6.3e-05      0.38      92     129 ..      46      84 ..       6      94 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.3e-05
       BNIP3  92 pssqseeeaseeek..eeeillkkdadWvadwssrpeniP 129
                 +s+  +  as+ ++  e +++  k+ad v dw+ +pen+ 
  CDO71138.1  46 TSTYDDSRASTPDSqfELHVDF-KQADRVRDWNEKPENAA 84 
                 2333333344444444555555.9**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.54
# Mc/sec: 3453.85
//
Query:       CDO71139.1  [L=276]
Description: hypothetical protein BN946_scf184845.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-38  130.0   0.0    1.5e-37  129.0   0.0    1.4  1  DUF4646   Domain of unknown function (DUF4646)


Domain annotation for each model (and alignments):
>> DUF4646  Domain of unknown function (DUF4646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   8.3e-42   1.5e-37       1     125 []      97     222 ..      97     222 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 8.3e-42
     DUF4646   1 PpsFsrppppelpyesfepislesrkkeledgFpelaPpskavphplvthdVseedWkrFledikaaaalstaekiaagvaplalslg.llgllvskai 98 
                 P sF+r pp elpy sf+ + +++++++l++gFp  aP + + php+vthdV+e+dW++F++d+++a++ls++++++ag++p+++ +g +l +  + + 
  CDO71139.1  97 PLSFTRMPPGELPYGSFPTMEVMCKGTTLDKGFPYGAPMCGVLPHPFVTHDVNESDWRWFVHDVRIAGSLSPMNRVVAGALPILFPFGlVLSVAAALGT 195
                 88**************************************************************************************999999999** PP

     DUF4646  99 ekkmkkkkegsvgelieqWnesfFkpR 125
                 e+++k++k+g+v eli++Wn++fF+pR
  CDO71139.1 196 EQYIKRRKRGPVSELIDHWNSHFFHPR 222
                 **************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1839.76
//
Query:       CDO71140.1  [L=638]
Description: hypothetical protein BN946_scf184845.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.34s 00:00:01.05 Elapsed: 00:00:00.55
# Mc/sec: 3491.09
//
Query:       CDO71141.1  [L=653]
Description: hypothetical protein BN946_scf184845.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-34  118.0   0.0    1.2e-33  117.4   0.0    1.3  1  Metallophos  Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
       0.11   12.2   0.5        1.6    8.5   0.1    2.3  2  DUF1647      Protein of unknown function (DUF1647)


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   1.3e-37   1.2e-33       2     203 ..     112     317 ..     111     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.3e-37
                  EEEEEESBTBTTCCTHHHHHH..HHHHHH....HHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddll..kllddl....lreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeelln 83 
                  +++v+gD+H     gq++ ++  +l++ +    ++e  ++l+l  GD+vdrg  ++e+ +l+l++ ++ yp+ ++ll+GNHe        +f+ e+++
   CDO71141.1 112 PVTVCGDIH-----GQYSLVAkyDLMKLFeiggNPETTRYLFL--GDYVDRGyfSIEC-VLYLWSLKIWYPDTLFLLRGNHEcrhltdyfTFKLECKR 201
                  799******.....8887777333334445557777899****..*******777777.7777*********************99999998889999 PP

                  HHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHH.HHHHTTCSEEEEEESSESSCSSS CS
  Metallophos  84 kygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkd.lekrekadwvivlgHsplyrgsg 176
                  ky       +++  + + f +lpla+++++  +++++hGg spel ++ld+++++++++e+p++g   d +++d  e++++ +++  + H  +  g++
   CDO71141.1 202 KYS-----ERIYDACMQSFCALPLAAIMNK--QFFCIHGGlSPEL-HTLDDIRNIDRFREPPTQGlmcDMLWSDpVEDFGQEKTTDSFVHNHVR-GCS 290
                  988.....899*******************..********88888.*****************************9999999999999999999.*** PP

                  CSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 177 ylfgdealedllkkygvdlvisGHtHv 203
                  y f ++a++ +l+++++  +i++H+ +
   CDO71141.1 291 YFFTYQAACQFLERNKLLSIIRAHEAQ 317
                  ************************976 PP

>> DUF1647  Protein of unknown function (DUF1647)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.024   2.1e+02       2      45 ..     198     244 ..     197     257 .. 0.74
   2 ?    8.5   0.1   0.00018       1.6      97     131 ..     345     380 ..     311     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.024
     DUF1647   2 eCksektgksydfCYkdpqn...sssiGkkFdCslvetleklkllee 45 
                 eCk + ++++yd C ++      +  + k+F C +     +l+ l++
  CDO71141.1 198 ECKRKYSERIYDACMQSFCAlplAAIMNKQFFCIHGGLSPELHTLDD 244
                 7*************998765222567788999988777666666665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00018
     DUF1647  97 ldlseeeieklk.kdknlevrkFntskYPeyvknlk 131
                 ld+ +++ + lk +++ l++r+Fn++  P +  n++
  CDO71141.1 345 LDVYNNKAAILKyESNVLNIRQFNATPHPYWLPNFM 380
                 8999999999**888999***********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.52
# Mc/sec: 3813.37
//
Query:       CDO71142.1  [L=247]
Description: hypothetical protein BN946_scf184845.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-77  260.3  16.7    1.7e-77  259.9  16.7    1.1  1  UNC-50        UNC-50 family
  ------ inclusion threshold ------
      0.053   13.3   5.9       0.08   12.7   5.9    1.3  1  CTP_transf_1  Cytidylyltransferase family
       0.43   10.9   9.0        3.3    8.0   3.6    2.2  2  DUF1772       Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> UNC-50  UNC-50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.9  16.7   2.8e-81   1.7e-77       2     221 .]      31     245 ..      30     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 259.9 bits;  conditional E-value: 2.8e-81
      UNC-50   2 lrrlfkfkqlDfetAlwemlhLiiaPkkvyrsiyyrkqtknqyaRdDPafliLlvlllllsaiawglayssslleilklilvmvlvdfllvglliatvl 100
                 +rrl++f+++Dfe+A+w++++L+i+Pk+vyr++y++kqtkn++aRdDPa+liL++++l+++aiaw+++ys +l+++++l++ m++ df+l+g++iat++
  CDO71142.1  31 FRRLLRFQSMDFELAAWQLTYLCISPKRVYRNVYFHKQTKNTWARDDPAILILIAACLCVTAIAWSVVYSYGLWGAIQLAFLMIFRDFFLCGVVIATFI 129
                 9************************************************************************************************** PP

      UNC-50 101 wllvnrlllksek....seqdvewaYcFDvhlnaflpilvllyvlqllllplilkkkfvslllgntlylvaigyYfyitflGYnalpflkktevlllpl 195
                 w+++nr+ll+  +    ++ +vewaY+FDvh+naf+p++++ly++ql+l+p+i ++++++l+++ntlyl++i++Y+y ++lG n+l        ll+pl
  CDO71142.1 130 WFFANRVLLSPPShstpEDAKVEWAYAFDVHTNAFVPLYLTLYLAQLFLVPIIFRNRWICLFVSNTLYLAGIAQYIYGIYLGLNKL--------LLAPL 220
                 *********444445569*****************************************************************975........9**** PP

      UNC-50 196 lllavlylitlllgfnvakslvslyf 221
                 l l++ y+i +llgfnva++++ lyf
  CDO71142.1 221 LPLFTGYII-SLLGFNVAQHVLPLYF 245
                 *********.************9997 PP

>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.9   1.3e-05      0.08      59     164 ..      90     216 ..      58     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
                   .HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---........................HHHHHHHHHHHHHHHHHTHHHH.TTHHHHHHHHHH CS
  CTP_transf_1  59 slvlllllllflylesliallklvlllvlvllllvlkvl.....................kskskklervilallallyvvlllqslllienikegl 134
                     ++++ +++ + l+ +i+l+ l+++ +++l  +v  ++                     k ++++  +v + +++ ly++l l  l+l+  i+++ 
    CDO71142.1  90 VTAIAWSVVYSYGLWGAIQLAFLMIFRDFFLCGVVIATFiwffanrvllsppshstpedaKVEWAYAFDVHTNAFVPLYLTLYLAQLFLVPIIFRNR 186
                   3344444444444555555555555555555444444445666666669***999999987777777777777777777777778999********* PP

                   HHHHHHHHHHHHHHHHHHHHHHCH---B-S CS
  CTP_transf_1 135 llvllllalvvaaDigaYffGklfGktkll 164
                   ++ l++  +  +a i++Y+ G+++G +kll
    CDO71142.1 187 WICLFVSNTLYLAGIAQYIYGIYLGLNKLL 216
                   *************************99987 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0023        14      54      84 ..      55      99 ..      18     110 .. 0.74
   2 ?    8.0   3.6   0.00056       3.3       3      92 ..     125     216 ..     124     224 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0023
     DUF1772 54 a..............araasrgarllylaaaallllsivpyTllv 84
                +              ++ ++r  +++++++aa+l++  + +++++
  CDO71142.1 55 SpkrvyrnvyfhkqtKNTWARDDPAILILIAACLCVTAIAWSVVY 99
                155555555556666556666677777799***999999998875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00056
     DUF1772   3 ilafslfvvPallslpasssl...llkqwrrlfkrgkavfpplallsalafaylaaraasrgarllylaaaallllsivpyTllvmvPtNnkL 92 
                 i++f +f    +l +p+s s+   +   w+ +f++ + +f pl l+  la ++l+     r ++ +++++  l+l++i+ y   +   +N+ L
  CDO71142.1 125 IATFIWFFANRVLLSPPSHSTpedAKVEWAYAFDVHTNAFVPLYLTLYLAQLFLV-PIIFRNRWICLFVSNTLYLAGIAQYIYGIYLGLNKLL 216
                 566666666666666666666799999*********7777778888888888666.4455666777767777788888888888888888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1547.57
//
Query:       CDO71143.1  [L=804]
Description: hypothetical protein BN946_scf184845.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-05   23.2   1.1    0.00013   22.0   1.1    1.7  1  WW        WW domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.1   7.3e-09   0.00013       1      31 []     241     272 ..     241     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 7.3e-09
                 X-TTEEEEE-TTT.T-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpds.GrvYYyNheTgetqWekP 31 
                 LPp+We ++ ++  +  YY+N +T e++W +P
  CDO71143.1 241 LPPDWEIRYPRNGgKDAYYFNVKTEESTWIRP 272
                 8***********88899*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 4972.85
//
Query:       CDO71144.1  [L=388]
Description: hypothetical protein BN946_scf184845.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                       89  (0.00496402); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 2460.30
//
Query:       CDO71145.1  [L=566]
Description: hypothetical protein BN946_scf184845.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-37  126.4   0.2    1.1e-36  125.6   0.2    1.4  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    8.7e-26   90.4   0.0    1.6e-25   89.5   0.0    1.4  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    2.5e-14   53.7   0.0    6.8e-14   52.4   0.0    1.7  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    0.00013   22.0   0.0    0.00034   20.7   0.0    1.7  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.2   2.4e-40   1.1e-36       2     137 ..      16     154 ..      15     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 2.4e-40
                 GGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE...EB-HHHHHHHHHHCCECEEEEE CS
   PGM_PMM_I   2 qkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg...llptPavsfairklkadagimi 97 
                 qk+gtsGlR++v++++ +++++e+++qai++++    k+k++vvG+D+R++s+e  ++++++  anGv ++++g   +l+tPa+s +irk+kad+gi +
  CDO71145.1  16 QKPGTSGLRKRVKVFQ-QEHYTENFVQAIFDAVDL--KGKTLVVGGDGRYFSPETVQTILKIGSANGVAKFIIGqngILSTPAASNIIRKYKADGGILL 111
                 899**********997.*****************9..6************************************************************* PP

                 --TTS-TTCCC...EEEEETTTCE--CHHHHHHHHHHCCT-EE CS
   PGM_PMM_I  98 taSHnppeyng...iKvylsnGgpispeveekIeaiiekeeea 137
                 taSHnp+++n    iK++ snGgp++++v++kI +++++++++
  CDO71145.1 112 TASHNPGGPNAdfgIKYNVSNGGPAPEAVTNKIFEKTKAISSY 154
                 **********7777************************99886 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0   3.5e-29   1.6e-25       2     107 ..     298     406 ..     297     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 3.5e-29
                  HHHHHHHHHHHHHCH...CSTTTC.EEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETT.CEEEETTTBSS--HHHHHHHHHH CS
  PGM_PMM_III   2 gdqllallakyllee...klkpga.gvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeS.ghiifldeattkDGilaallvle 94 
                  +d++++++  ++ e+    +k+g  g++++++ts  +++vakk+g++++ +++G+k+++++m++++++++gEeS g+++ + +  +kDG++a++++l+
   CDO71145.1 298 SDSVAIIADWAA-EAipyFKKGGIkGLARSMPTSAQIDKVAKKKGLECHVVPTGWKFFGNLMDAGRLSICGEESfGTGSDHIR--EKDGVWAIVAWLN 392
                  566666666555.5558745555559*****************************************************9977..8************ PP

                  HHHHH.TS-HHHHH CS
  PGM_PMM_III  95 ilaet.gkslsell 107
                  ila   ++s+++l+
   CDO71145.1 393 ILAYAnKESPNKLI 406
                  ***55234444433 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.5e-17   6.8e-14       2      99 ..     185     289 ..     184     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.5e-17
                 HHHHHGGGTS-....HHHHHHH..T-EEEEE-TT-TTHHHHHHHHHH.TT-.EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TT CS
  PGM_PMM_II   2 aYiealkekvd....seaikks..glkvvidplhGaggeilkellke.lgv.dvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgD 92 
                 +Y+e l++++d    ++ +++   ++kv++d +hG++g +   ++ + lg+ +    na+p pdf++++p+p+   + ++l+e v++eg ++g+a DgD
  CDO71145.1 185 DYLELLENIFDffliKSFLQSHadSFKVLFDGMHGVTGPYGRAIFVDtLGLpESSVQNATPLPDFGGGHPDPNL-TYAHELVERVEREGIHFGAASDGD 282
                 7889999999988875555554558*******************9886888877779*****************.************************ PP

                 S-BEEEE CS
  PGM_PMM_II  93 aDRlgvv 99 
                 +DR ++ 
  CDO71145.1 283 GDRNMIY 289
                 ***9986 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.6e-08   0.00034      24      60 ..     486     526 ..     437     540 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 7.6e-08
                 HCCCCCCCCGCCEEEE.EEEETTCCE...EEEEEEES.SHH CS
  PGM_PMM_IV  24 sikeglkilledGrrlavRpSGTepl...lrvyvEak.sde 60 
                 s+++g  il+ dG+r++ R SGT++    +r yvE++ + e
  CDO71145.1 486 SRNQGQIILFDDGSRVVFRLSGTGSQgatVRMYVERYvPPE 526
                 799**********************9999******997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3516.22
//
Query:       CDO71146.1  [L=604]
Description: hypothetical protein BN946_scf184845.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-28   98.6   6.6    7.1e-28   98.3   0.9    2.3  2  DUF2236   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.65   10.5   6.2       0.11   13.0   1.9    1.9  2  SPR1      Psoriasis susceptibility locus 2


Domain annotation for each model (and alignments):
>> DUF2236  Uncharacterized protein conserved in bacteria (DUF2236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.9     8e-32   7.1e-28      35     217 ..      52     297 ..       2     304 .. 0.77
   2 ?    3.0   0.5     0.011        98     152     213 ..     394     467 ..     375     482 .. 0.71

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 8e-32
     DUF2236  35 stf.ad.plrRllrTaqfiltvvygs.................................geeaeaaaarVrllHaavrgtd.....asg.eryg.ainp 91 
                 s+  ad +l+Rll+T+qf+l+v+  s                                 g++++++a+rVrllH  +r ++     ++g   +  +i +
  CDO71146.1  52 SRAsADrTLSRLLETFQFVLDVMGCSapaesahndpftendnfqqdhvahqggiahivpGGDGWRSAVRVRLLHGVARWRVqerwkKEGrFDNAvPISQ 150
                 44445569****************55567888999*********************************************977776555756667**** PP

     DUF2236  92 edllwvhatfsasflraygrtvgpltaeeeeayyhewrrvgrllGvpdrll...patraafdayldemvlaelevdeearel....gdarll....... 176
                 edl+ ++a+fs++++ ++  ++ ++++ e+ ay+++wr+vg++lG++++ l   +++   +d++l++  l+ +  +++a       +da  +       
  CDO71146.1 151 EDLAATLAAFSTIPIWCLNKLGIQPSDSEASAYLALWRHVGFYLGIEPKILlrlFTSTRTADKFLATAALHLF--SDDATHApenpADA--Qttilrgp 245
                 ***************666666455*************************888887777777999988876666..22233332444222..13355666 PP

     DUF2236 177 ............parpalpllrvitrgllppalrellglpvpwssrdellvva 217
                             p++++l    ++tr+ll+p+l   l lp   s r +l+  a
  CDO71146.1 246 tipilvavsnrpPLHTSLEYNIALTRYLLGPSLSAHLELPDT-SLRVRLRMHA 297
                 777778888899****************************53.4455554333 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.011
     DUF2236 152 yldemv................laelevdeearelgdarllparpalpllrvitrgllppalrellglpvpwssrdel 213
                  ++emv                + +l  + + r+l ++r     ++l+l+ +  ++ +p++ r +l lp+p    +++
  CDO71146.1 394 VWQEMVavdyprpphadhfefrRKQLLSTYTYRKLKRLR----TILLRLTLLQMTEIMPEQGRAGLSLPSPINMDWQY 467
                 455564444444444444444466777777777775555....999***********************985444444 PP

>> SPR1  Psoriasis susceptibility locus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   1.1e+04      57      76 ..     392     410 ..     361     411 .. 0.62
   2 ?   13.0   1.9   1.2e-05      0.11      43      68 ..     482     507 ..     444     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
        SPR1  57 sgvwppeppstdppqpplpd 76 
                 s+vw  e  + d p+pp  d
  CDO71146.1 392 SEVWQ-EMVAVDYPRPPHAD 410
                 56774.55667777777766 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.2e-05
        SPR1  43 pppgpsrpwrdlpesgvwppeppstd 68 
                  p+ ps++wrdl  s +wp  +pst 
  CDO71146.1 482 APTDPSHTWRDLHWSVAWPTSSPSTL 507
                 5789*******************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3722.83
//
Query:       CDO71147.1  [L=247]
Description: hypothetical protein BN946_scf184845.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-13   50.2   7.8    4.6e-08   32.6   0.3    4.3  4  TPR_11        TPR repeat
    8.6e-11   41.1  13.7    3.4e-07   29.9   0.0    5.6  6  TPR_2         Tetratricopeptide repeat
    4.3e-09   36.1   0.1      0.033   14.6   0.0    3.8  3  TPR_17        Tetratricopeptide repeat
    7.5e-09   36.1   1.4    2.7e-05   24.7   0.1    3.7  3  TPR_16        Tetratricopeptide repeat
    1.4e-08   34.2  12.3    2.6e-07   30.2   0.0    4.9  6  TPR_1         Tetratricopeptide repeat
    1.6e-08   34.9   3.1    0.00083   19.8   0.1    2.7  2  TPR_19        Tetratricopeptide repeat
    2.7e-08   34.0   7.7    0.00025   21.6   0.0    5.0  5  TPR_14        Tetratricopeptide repeat
    1.1e-07   32.0   9.7    0.00051   20.3   0.2    4.2  4  TPR_12        Tetratricopeptide repeat
    1.6e-05   24.6   3.3     0.0055   16.5   0.0    3.8  3  TPR_10        Tetratricopeptide repeat
    0.00027   21.4   0.2      0.038   14.6   0.0    3.4  3  TPR_6         Tetratricopeptide repeat
    0.00037   20.5  12.3      0.023   14.9   0.0    5.2  6  TPR_8         Tetratricopeptide repeat
    0.00038   19.8   0.5    0.00066   19.0   0.5    1.4  1  TPR_15        Tetratricopeptide repeat
     0.0018   18.1   5.0      0.072   13.2   0.0    3.9  4  TPR_7         Tetratricopeptide repeat
     0.0034   17.4   0.1     0.0084   16.1   0.1    1.7  1  ANAPC5        Anaphase-promoting complex subunit 5
  ------ inclusion threshold ------
      0.016   15.4   3.6      0.066   13.5   0.2    2.7  3  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
      0.021   15.2   1.7       0.29   11.5   0.2    2.6  2  TPR_20        Tetratricopeptide repeat
      0.028   14.5   1.7        2.6    8.1   1.1    3.0  1  DUF3856       Domain of Unknown Function (DUF3856)
       0.69   10.3   7.0         12    6.4   2.5    2.6  2  DUF1771       Domain of unknown function (DUF1771)
       0.99    9.5   7.8        4.7    7.4   0.1    3.7  3  Exonuc_VII_S  Exonuclease VII small subunit
        3.4    7.8   9.6         15    5.7   0.2    3.8  4  MIT           MIT (microtubule interacting and transport) dom


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0032       2.9       6      39 ..      85     117 ..      80     120 .. 0.85
   2 !   32.6   0.3   5.1e-11   4.6e-08       7      38 ..     119     150 ..     117     151 .. 0.94
   3 !    7.4   0.1    0.0038       3.4      13      39 ..     161     187 ..     159     190 .. 0.87
   4 ?    5.5   0.1     0.015        14       8      19 ..     190     201 ..     188     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0032
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 e G+  +A + Yk+ ++++   a+a++nLG+++y
  CDO71147.1  85 EEGDVHAAKALYKRSVDIKR-TASALFNLGVTHY 117
                 67888889999999999986.59*********99 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 5.1e-11
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 + ++++Ai+++k+A++l P++a+a+ nL+ ay
  CDO71147.1 119 LKEFDDAIAVWKEAIALQPSSADAHTNLASAY 150
                 5689**************************99 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0038
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlayy 39 
                 A+ +++ A  l P++ae+ +nL++++ 
  CDO71147.1 161 ALHHLRVAASLAPEDAEIAFNLAAVLE 187
                 788888999**************9986 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.015
      TPR_11   8 GkyeeAieaYkk 19 
                 G +eeA+e+Yk+
  CDO71147.1 190 GFLEEALEQYKR 201
                 669*******97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.37   3.3e+02      13      30 ..      85     102 ..      73     105 .. 0.83
   2 !   29.9   0.0   3.8e-10   3.4e-07       1      33 [.     106     138 ..     106     139 .. 0.95
   3 ?   -0.8   0.0       2.5   2.3e+03       1      12 [.     140     151 ..     140     152 .. 0.88
   4 ?    2.5   0.0      0.23     2e+02      17      34 .]     158     175 ..     156     175 .. 0.89
   5 !   10.5   1.5    0.0006      0.53       1      27 [.     176     202 ..     176     205 .. 0.92
   6 ?   -0.9   0.1       2.8   2.5e+03      17      30 ..     226     239 ..     220     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.37
       TPR_2  13 klgdyeeAleafekAlel 30 
                 + gd   A++++++++ +
  CDO71147.1  85 EEGDVHAAKALYKRSVDI 102
                 6799999*****999876 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 3.8e-10
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a al+nlG  +y+l+++++A++ +++A++l P 
  CDO71147.1 106 ASALFNLGVTHYHLKEFDDAIAVWKEAIALQPS 138
                 679****************************96 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.5
       TPR_2   1 aealynlGlayy 12 
                 a+a+ nl+ ay+
  CDO71147.1 140 ADAHTNLASAYI 151
                 789*****9995 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.23
       TPR_2  17 yeeAleafekAleldPnn 34 
                 ++ Al++++ A +l+P++
  CDO71147.1 158 PDLALHHLRVAASLAPED 175
                 688*************86 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.0006
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 ae+ +nl+ ++++ g +eeAle ++++
  CDO71147.1 176 AEIAFNLAAVLEACGFLEEALEQYKRS 202
                 7889********************997 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 2.8
       TPR_2  17 yeeAleafekAlel 30 
                  +eA++  +kA + 
  CDO71147.1 226 MKEAEDQANKATKE 239
                 48999999999875 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0074       6.7      13      33 ..     106     126 ..     103     127 .. 0.92
   2 !   14.6   0.0   3.7e-05     0.033       3      23 ..     130     150 ..     128     157 .. 0.93
   3 !    9.9   0.0    0.0011         1       5      30 ..     168     193 ..     164     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0074
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a a++nL++++++++++++A+
  CDO71147.1 106 ASALFNLGVTHYHLKEFDDAI 126
                 5699***************98 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.7e-05
      TPR_17   3 lkaleldPnnadaynnLAell 23 
                 ++a++l P++ada++nLA ++
  CDO71147.1 130 KEAIALQPSSADAHTNLASAY 150
                 78****************998 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0011
      TPR_17   5 aleldPnnadaynnLAelllknGdlm 30 
                 a+ l P +a+  +nLA +l+  G l+
  CDO71147.1 168 AASLAPEDAEIAFNLAAVLEACGFLE 193
                 66788**************9655333 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   3.1e-08   2.7e-05       4      67 ..      80     139 ..      77     140 .. 0.89
   2 !   17.7   0.1   4.8e-06    0.0043      11      44 ..     120     150 ..     119     154 .. 0.93
   3 !   10.8   2.3   0.00067       0.6      12      60 ..     157     202 ..     155     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.1e-08
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 ++  l+ gd  +A a++++ ++      ++a Al++lg+ +++++++++A+a+ ++a++  p++
  CDO71147.1  80 GTQKLEEGDVHAAKALYKRSVDIK----RTASALFNLGVTHYHLKEFDDAIAVWKEAIALQPSS 139
                 55568899***************9....4************************99999999976 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.8e-06
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaa 44 
                 +++ddA+a++++a++++   P  a+A+ +l+ a+
  CDO71147.1 120 KEFDDAIAVWKEAIALQ---PSSADAHTNLASAY 150
                 679**************...***********998 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00067
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 ++d A++ l+ a  ++   P++ae +++l+ ++ + g l+eA+++y++ 
  CDO71147.1 157 RPDLALHHLRVAASLA---PEDAEIAFNLAAVLEACGFLEEALEQYKRS 202
                 8999*****9999999...*************************99985 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.91   8.2e+02      14      31 ..      86     103 ..      80     105 .. 0.81
   2 !   30.2   0.0   2.8e-10   2.6e-07       1      33 [.     106     138 ..     106     139 .. 0.96
   3 ?    2.8   0.0      0.13   1.1e+02       1      11 [.     140     150 ..     140     152 .. 0.93
   4 ?   -3.0   0.0       8.9     8e+03      17      33 ..     158     174 ..     157     175 .. 0.69
   5 ?    5.3   0.9     0.021        19       3      27 ..     178     202 ..     176     205 .. 0.87
   6 ?   -2.7   0.3       7.2   6.5e+03      15      27 ..     224     236 ..     224     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.91
                 TT-HHHHHHHHHHHHHHS CS
       TPR_1  14 lgkydeAleyyekALeln 31 
                  g+   A + y++ + + 
  CDO71147.1  86 EGDVHAAKALYKRSVDIK 103
                 688889999999998876 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2.8e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a al+nlG+++++l+++d+A++  ++A+ l+P+
  CDO71147.1 106 ASALFNLGVTHYHLKEFDDAIAVWKEAIALQPS 138
                 689*****************************7 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHH CS
       TPR_1   1 akalynlGnay 11 
                 a+a+ nl+ ay
  CDO71147.1 140 ADAHTNLASAY 150
                 89********9 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 8.9
                 HHHHHHHHHHHHHHSTT CS
       TPR_1  17 ydeAleyyekALelnPn 33 
                 +d Al + + A +l P+
  CDO71147.1 158 PDLALHHLRVAASLAPE 174
                 68898888766666665 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                 + +nl++++   g ++eAle y++ 
  CDO71147.1 178 IAFNLAAVLEACGFLEEALEQYKRS 202
                 5689*******************96 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 7.2
                 T-HHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekA 27 
                 +k +eA++  +kA
  CDO71147.1 224 KKMKEAEDQANKA 236
                 5789999988888 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   9.3e-07   0.00083       2      63 ..      84     144 ..      83     151 .. 0.91
   2 !   14.9   0.4   3.3e-05     0.029       7      51 ..     158     202 ..     156     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.3e-07
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 l+egd  +A al+++  + +   +++   L   ++ l+++d+A+a+ +++ + +p +a++++
  CDO71147.1  84 LEEGDVHAAKALYKRSVDIKRTASALFN-LGVTHYHLKEFDDAIAVWKEAIALQPSSADAHT 144
                 89**************999887777777.**************************9999986 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.3e-05
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 ++ Al +l+ a + +p++ae++ +LA +l a g l+eA +  ++ 
  CDO71147.1 158 PDLALHHLRVAASLAPEDAEIAFNLAAVLEACGFLEEALEQYKRS 202
                 6789**********************************9987765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       7.4   6.6e+03      21      37 ..      50      66 ..      31      77 .. 0.70
   2 ?    1.8   0.0      0.62   5.6e+02      12      29 ..      84     101 ..      71     112 .. 0.77
   3 !   21.6   0.0   2.8e-07   0.00025       4      43 ..     109     148 ..     106     149 .. 0.90
   4 ?    5.9   0.5      0.03        27      16      43 ..     157     184 ..     156     185 .. 0.91
   5 !    8.1   0.1    0.0061       5.5       7      27 ..     182     202 ..     180     213 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 7.4
      TPR_14 21 iallrralalaPddaea 37
                ++ l +a ++ P++ ++
  CDO71147.1 50 RRSLGWATSTTPNSSAV 66
                56666777777777665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.62
      TPR_14  12 lalGdpdeAiallrrala 29 
                 l+ Gd  +A al++r ++
  CDO71147.1  84 LEEGDVHAAKALYKRSVD 101
                 677888999999998766 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 2.8e-07
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l  l+  +++l ++d+Aia+ ++a+al+P++a+a++ la 
  CDO71147.1 109 LFNLGVTHYHLKEFDDAIAVWKEAIALQPSSADAHTNLAS 148
                 556788899****************************995 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.03
      TPR_14  16 dpdeAiallrralalaPddaeawlllaq 43 
                 +pd A+ +lr a +laP+dae+ + la 
  CDO71147.1 157 RPDLALHHLRVAASLAPEDAEIAFNLAA 184
                 688999999***************9996 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0061
      TPR_14   7 laeallalGdpdeAiallrra 27 
                 la++l+a G ++eA++ ++r 
  CDO71147.1 182 LAAVLEACGFLEEALEQYKRS 202
                 899***************995 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.5   3.1e+03      30      54 ..      32      56 ..      26      60 .. 0.74
   2 ?    2.2   0.0      0.25   2.3e+02      58      76 ..      86     104 ..      82     105 .. 0.66
   3 !   20.3   0.2   5.7e-07   0.00051       2      49 ..     105     151 ..     104     174 .. 0.87
   4 !   12.6   1.0   0.00014      0.13       4      31 ..     177     204 ..     174     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.5
      TPR_12 30 leiarrllGpdhpltattlrnLgrl 54
                l+++ r+ +  +++++ ++r Lg++
  CDO71147.1 32 LAAFARSRNVSRANVVVSRRSLGWA 56
                5556666666778888888888886 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.25
      TPR_12  58 lgryeeAlelleealaiae 76 
                  g+  +A +l++++++i++
  CDO71147.1  86 EGDVHAAKALYKRSVDIKR 104
                 4666677777777777765 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 5.7e-07
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlr 49 
                 +a+al nl++++++l+++d+A++  ++a++++ +++  + h ++a++++
  CDO71147.1 105 TASALFNLGVTHYHLKEFDDAIAVWKEAIALQpSSA--DAHTNLASAYI 151
                 6888989*********************99996666..77888888875 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00014
      TPR_12   4 talnnlaavlrrlgrydeAlellekale 31 
                  ++ nlaavl + g ++eAle ++++ e
  CDO71147.1 177 EIAFNLAAVLEACGFLEEALEQYKRSKE 204
                 4444********************9965 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.2   1.8e+02      16      34 ..      87     105 ..      85     106 .. 0.88
   2 !   16.5   0.0   6.1e-06    0.0055       1      31 [.     105     135 ..     105     136 .. 0.95
   3 ?    4.9   0.1     0.028        25       7      28 ..     181     202 ..     178     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
      TPR_10  16 grydeAealleealairrr 34 
                 g+ ++A al++++++i r 
  CDO71147.1  87 GDVHAAKALYKRSVDIKRT 105
                 78899**********9885 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.1e-06
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealai 31 
                 tAs+l NL++++++++++d+A a  +ea+a+
  CDO71147.1 105 TASALFNLGVTHYHLKEFDDAIAVWKEAIAL 135
                 899999***********************97 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.028
      TPR_10   7 NLanalrqrgrydeAealleea 28 
                 NLa++l + g ++eA++ ++++
  CDO71147.1 181 NLAAVLEACGFLEEALEQYKRS 202
                 9***************999875 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.61   5.5e+02       9      25 ..      76      98 ..      69     101 .. 0.72
   2 !   14.6   0.0   4.2e-05     0.038       2      33 .]     108     139 ..     107     139 .. 0.96
   3 ?    0.4   0.0       1.4   1.3e+03      18      32 ..     187     201 ..     176     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.61
                HHHHH......HHHHHHHHHHHH CS
       TPR_6  9 syrkl......gdtdkAlealer 25
                +++++      gd  +A+++++r
  CDO71147.1 76 CLEEGtqkleeGDVHAAKALYKR 98
                55554455566899999999987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 Al++l+  ++ l++ d+A++ +++ i   P S
  CDO71147.1 108 ALFNLGVTHYHLKEFDDAIAVWKEAIALQPSS 139
                 9**************************99987 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHH-TT CS
       TPR_6  18 kAlealerlikeYPd 32 
                 +A+  le+ +++Y  
  CDO71147.1 187 EACGFLEEALEQYKR 201
                 789999999999965 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.4   7.5e+03      19      26 ..      72      79 ..      72      82 .. 0.81
   2 ?    6.4   0.0     0.013        12      13      32 ..      85     104 ..      83     105 .. 0.90
   3 !   14.9   0.0   2.5e-05     0.023       1      33 [.     106     138 ..     106     139 .. 0.95
   4 ?    0.4   0.0       1.2     1e+03       1      12 [.     140     151 ..     140     151 .. 0.88
   5 ?    2.5   0.6      0.25   2.2e+02       1      27 [.     176     202 ..     176     205 .. 0.81
   6 ?   -1.0   0.3       3.1   2.7e+03      15      29 ..     224     238 ..     220     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.4
                HHHHHHHH CS
       TPR_8 19 eAkeyyek 26
                eA++++e+
  CDO71147.1 72 EAMQCLEE 79
                79999997 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
                 HTT-HHHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleldp 32 
                 + gd ++Ak+ y++ +++++
  CDO71147.1  85 EEGDVHAAKALYKRSVDIKR 104
                 679*************9986 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 2.5e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+a++nlg ++  l++++ A+++ ++a+ l+p+
  CDO71147.1 106 ASALFNLGVTHYHLKEFDDAIAVWKEAIALQPS 138
                 689***************************996 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.2
                 CCHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiyl 12 
                 a+a+ nl+s+y+
  CDO71147.1 140 ADAHTNLASAYI 151
                 68999*****96 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.25
                 CCHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyeka 27 
                 ae+ +nl+ +++  g +eeA e y++ 
  CDO71147.1 176 AEIAFNLAAVLEACGFLEEALEQYKRS 202
                 577789999999999999999999876 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 3.1
                 T-HHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekale 29 
                 ++++eA+   +ka++
  CDO71147.1 224 KKMKEAEDQANKATK 238
                 688999999999987 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.5   7.3e-07   0.00066     157     268 ..      84     196 ..      59     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.3e-07
      TPR_15 157 rqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara...esdasLwgplaaAlll..LgrpkkALeylrkqakenrkdplw 250
                 ++eg+  aA  +y++ ++ + +     +al  l +     +e   +++ wk++     s+a+ +  la+A+    ++rp+ AL++lr  a+  ++d+ +
  CDO71147.1  84 LEEGDVHAAKALYKRSVDIKRTA----SALFNLGVTHYHLKEFDDAIAVWKEAIalqPSSADAHTNLASAYIVspVSRPDLALHHLRVAASLAPEDAEI 178
                 56666777777777777777662....222223344444556667999***998999888889999999987555************************ PP

      TPR_15 251 llaYADaleqagradeAw 268
                  +  A +le+ g  +eA 
  CDO71147.1 179 AFNLAAVLEACGFLEEAL 196
                 *************99996 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   1.1e+03      12      26 ..      86     100 ..      84     106 .. 0.80
   2 !   13.2   0.0     8e-05     0.072       1      33 [.     108     138 ..     108     141 .. 0.88
   3 ?   -1.3   0.1       3.2   2.9e+03       1       9 [.     142     150 ..     142     151 .. 0.85
   4 ?    3.6   0.2     0.091        82       3      25 ..     180     202 ..     179     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
       TPR_7  12 lGdyeeAielyeqsL 26 
                 +Gd   A  ly++s 
  CDO71147.1  86 EGDVHAAKALYKRSV 100
                 79999999****965 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 aL+nL++++  l ++++Ai + ++  a++ +p+
  CDO71147.1 108 ALFNLGVTHYHLKEFDDAIAVWKE--AIALQPS 138
                 79******************9999..7777666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.2
       TPR_7   1 aLlnLarly 9  
                 a+ nLa++y
  CDO71147.1 142 AHTNLASAY 150
                 678****99 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.091
       TPR_7   3 lnLarlysrlGdyeeAielyeqs 25 
                 +nLa + +++G  eeA+e y++s
  CDO71147.1 180 FNLAAVLEACGFLEEALEQYKRS 202
                 5999999999999*******994 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.4e-06    0.0084      40      78 ..     105     143 ..      70     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.4e-06
      ANAPC5  40 yqyalLnlaslhadfghneeAvkaleeairlArenkDks 78 
                   +al+nl ++h+++ + ++A++  +eai+l   ++D  
  CDO71147.1 105 TASALFNLGVTHYHLKEFDDAIAVWKEAIALQPSSADAH 143
                 5689**************************988888854 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   7.3e-05     0.066      11      67 ..      95     151 ..      85     168 .. 0.80
   2 ?    1.7   0.2      0.35   3.1e+02      41      78 ..     160     198 ..     155     202 .. 0.83
   3 ?   -1.3   0.0         3   2.7e+03      37      54 ..     224     242 ..     219     246 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.3e-05
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHH CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcll 67 
                 l+ r +   ++ +++++ l+ ++y++++++ A+ + ++a  l+++s  ++  +A +++
  CDO71147.1  95 LYKRSV-DIKRTASALFNLGVTHYHLKEFDDAIAVWKEAiALQPSSADAHTNLASAYI 151
                 444555.77888899999****************************999999998887 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.35
                 HHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  41 rAyellrka.klnskslgcrylfAqcllkLkkyeeAiaa 78 
                  A++ lr a  l++++ ++++ +A +l + + +eeA+  
  CDO71147.1 160 LALHHLRVAaSLAPEDAEIAFNLAAVLEACGFLEEALEQ 198
                 688999999999999999999999999999999999865 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3
                 T-HHHHHHHHHCT.SHHHC CS
      ANAPC3  37 gqykrAyellrka.klnsk 54 
                 ++ k+A + ++ka k++sk
  CDO71147.1 224 KKMKEAEDQANKAtKEESK 242
                 5677888888888666555 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1       0.2   1.8e+02       8      34 ..     126     152 ..     120     165 .. 0.84
   2 ?   11.5   0.2   0.00032      0.29       7      44 ..     161     198 ..     155     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
      TPR_20   8 laeleaalaanpddldarldlAlalla 34 
                 +a  ++a+a +p+  da+ +lA a++ 
  CDO71147.1 126 IAVWKEAIALQPSSADAHTNLASAYIV 152
                 66678999***************9985 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00032
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleq 44 
                  l  l+ a+  +p+d +++++lA +l a g  eeAleq
  CDO71147.1 161 ALHHLRVAASLAPEDAEIAFNLAAVLEACGFLEEALEQ 198
                 56789999999*************************98 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.1    0.0028       2.6       9      44 ..      73     108 ..      69     215 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T CS
     DUF3856   9 aylalseaekqleegayeeaaasyrkalevsrtipa 44 
                 a   l e+ ++leeg  + a+a y++++++ rt +a
  CDO71147.1  73 AMQCLEEGTQKLEEGDVHAAKALYKRSVDIKRTASA 108
                 566789999999999999999999999999999775 PP

>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.024        22      16      41 ..      74      99 ..      69     109 .. 0.83
   2 ?    6.4   2.5     0.013        12      19      58 ..     192     236 ..     190     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.024
     DUF1771 16 nelfekAaeAyrrGdgaaAkelseqG 41
                 +++e+ ++  ++Gd +aAk l ++ 
  CDO71147.1 74 MQCLEEGTQKLEEGDVHAAKALYKRS 99
                58******************997765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
     DUF1771  19 fekAaeAyrrGd.....gaaAkelseq..GkehgekmeeanreAaea 58 
                 +e+A e y+r +     +aa +       +k +g+km+ea  +A +a
  CDO71147.1 192 LEEALEQYKRSKeygveRAAMHIR--NvsAKILGKKMKEAEDQANKA 236
                 789999999999888533444444..345***************876 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0052       4.7       3      20 ..      72      89 ..      71     109 .. 0.80
   2 ?    1.3   0.0      0.41   3.7e+02      23      35 ..     123     135 ..     121     136 .. 0.91
   3 ?    3.3   0.2     0.095        85      22      33 ..     192     203 ..     191     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0052
  Exonuc_VII_S  3 ealaeLeeIvekLEsgel 20
                  ea++ Lee  +kLE+g++
    CDO71147.1 72 EAMQCLEEGTQKLEEGDV 89
                  89************9997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.41
  Exonuc_VII_S  23 eeslklyeeGvkL 35 
                   +++++ ++e+++L
    CDO71147.1 123 DDAIAVWKEAIAL 135
                   99*********98 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.095
  Exonuc_VII_S  22 LeeslklyeeGv 33 
                   Lee+l++y++  
    CDO71147.1 192 LEEALEQYKRSK 203
                   9********976 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.017        15       3      33 ..      72     102 ..      71     108 .. 0.91
   2 ?    0.6   0.0      0.65   5.9e+02       4      32 ..     106     134 ..     103     145 .. 0.80
   3 ?    4.4   0.5     0.045        41       9      33 ..     181     205 ..     176     228 .. 0.86
   4 ?    0.0   0.2         1   9.2e+02       3      18 ..     228     243 ..     226     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.017
         MIT   3 kAlelvkkAveeDnagnyeeAlelYkealel 33 
                 +A +++++ +++ ++g+  +A  lYk ++++
  CDO71147.1  72 EAMQCLEEGTQKLEEGDVHAAKALYKRSVDI 102
                 5889999*********************985 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.65
         MIT   4 AlelvkkAveeDnagnyeeAlelYkeale 32 
                 A +l++  v     +++++A+   kea+ 
  CDO71147.1 106 ASALFNLGVTHYHLKEFDDAIAVWKEAIA 134
                 66677777777778899999999999985 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.045
         MIT   9 kkAveeDnagnyeeAlelYkealel 33 
                 + A+ ++  g  eeAle Yk + e+
  CDO71147.1 181 NLAAVLEACGFLEEALEQYKRSKEY 205
                 567888888899********98776 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1
         MIT   3 kAlelvkkAveeDnag 18 
                 +A + ++kA++e+++ 
  CDO71147.1 228 EAEDQANKATKEESKT 243
                 6778999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1052  (0.0586759); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.51
# Mc/sec: 1466.86
//
Query:       CDO71148.1  [L=282]
Description: hypothetical protein BN946_scf184845.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.86    9.4   5.2          2    8.2   5.2    1.5  1  MCPVI     Minor capsid protein VI


Domain annotation for each model (and alignments):
>> MCPVI  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.2   0.00011         2     125     206 ..     154     234 ..     142     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00011
                 XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 125 ald.pkdeeavkqgeptvePiaPeaksvlvPvtldlpesvdevkkPvlssesavvvsrPsrlelrraaskrrrkRkrasgWra 206
                 al  p+ e a ++g  ++ P+ P a+   vP  l+ pe+ +  +k +  s     v +Ps ++  ++++  r  R+r sgW +
  CDO71148.1 154 ALTvPQVEAAEARGDSPTLPASPYATRKPVPS-LSQPEAPSR-SKSSGRSTLESGVYEPSLASAVPSTATSRMYRTRDSGWST 234
                 45569999999**************9998885.566665555.555555555566778***********************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.32s 00:00:00.86 Elapsed: 00:00:00.51
# Mc/sec: 1677.83
//
Query:       CDO71149.1  [L=549]
Description: hypothetical protein BN946_scf184845.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.8   0.7      0.015   15.8   0.7    3.0  4  MGC-24    Multi-glycosylated core protein 24 (MGC-24), sialom


Domain annotation for each model (and alignments):
>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.48   8.6e+03      69      79 ..      16      26 ..       8      50 .. 0.49
   2 ?   15.8   0.7   8.3e-07     0.015      52     126 ..     131     210 ..     100     220 .. 0.67
   3 ?   -3.3   0.1      0.64   1.1e+04      82     100 ..     330     348 ..     325     351 .. 0.63
   4 ?   -1.2   1.3      0.14   2.6e+03      62     103 ..     456     497 ..     413     510 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.48
      MGC-24 69 tttkpssttts 79
                t+t+p +t+t+
  CDO71149.1 16 TSTNPQQTSTA 26
                22222222222 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 8.3e-07
      MGC-24  52 csaaskstpkptnstaktttkpsstttstsvatsgttnttvtptsqparkstFDaA...sFiGGivLvL.gvqAviFF.l 126
                 c  a  s ++++++t+ +t++ps  +ts+s++ +++t+t ++p s++  + +  +A     iGG+v++  ++ A i+F l
  CDO71149.1 131 CLGAVPSPSSSSSATSAPTSAPSVIATSASTSPTSSTSTLPIPVSDAVSTHSRAGAiagGVIGGLVIIGaAIAAYIYFgL 210
                 33344443444466777788888888888888777888889998887655554443222789999998515677776634 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.64
      MGC-24  82 vatsgttnttvtptsqpar 100
                 ++tsg+++tt++ + ++a+
  CDO71149.1 330 SSTSGSSATTPISEPPSAH 348
                 3467777777766665554 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.14
      MGC-24  62 ptnstaktttkpsstttstsvatsgttnttvtptsqparkst 103
                  + ++a + +++ s +++ s + ++++ +    +s +  +st
  CDO71149.1 456 ISPNAASAYASSASGSAADSRSPTASPYSMYGNNSGSGSTST 497
                 333333333333333333333333333333333333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.50
# Mc/sec: 3320.46
//
Query:       CDO71150.1  [L=322]
Description: hypothetical protein BN946_scf184845.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-12   44.8   2.5    1.4e-11   44.3   2.5    1.3  1  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.02   13.8   0.1      0.029   13.3   0.1    1.1  1  MFS_1     Major Facilitator Superfamily
       0.19   12.0   2.0       0.44   10.8   2.0    1.6  1  YiaAB     yiaA/B two helix domain


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   2.5   2.3e-15   1.4e-11     100     285 ..      78     283 ..      24     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.3e-15
        CorA 100 deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlk...........rlla..kaddkl 185
                 ++ ++ +  ++ ++ +l +++  l++++  +   +  l  eled+++++ +++l+ + rrl+ ++  ++  +e+l+            +l+  ++  ++
  CDO71150.1  78 SKTSGLPYEFRAVESILLSVLSALEAEMVFIRNLVGGLLAELEDDIDHDRFKRLLHYSRRLASFQNRAKLVQEALEevleqdqdlaaMYLTdkRNGVPR 176
                 455678889999****************************************************66666666666633334443333333366555555 PP

        CorA 186 lddedkey...lrdlldelerllemlealrerleslqdtyssllserlNrvmk...vLTvltaif.lPlTlitGiyGmNfkg.lPelewsygypfvlll 276
                 + d+++e+   l+  + ++e +++++e++++ ++s q++   +l+ + N ++    ++++lt+ + +  Tl++Gi+GmN k  + e+ew + ++ + ++
  CDO71150.1 177 YHDDHEELevlLESFSKQVEEIVNEAENIQSNVQSTQEIVELILDSNRNALLAldlKISILTMGIgVG-TLLAGIFGMNLKShIEEHEWAFYAMGAATI 274
                 555555545557777777888****************************999622257*******9**.************658899999966666666 PP

        CorA 277 glmallail 285
                 ++++ +a+l
  CDO71150.1 275 AFSLGAAML 283
                 666666665 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.9e-06     0.029     123     177 ..     234     288 ..     230     317 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-06
       MFS_1 123 igllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepp 177
                 i++l++g+++G++l+ ++g  l s++   +++fy+++++++ + + +++ l +++ 
  CDO71150.1 234 ISILTMGIGVGTLLAGIFGMNLKSHIEeHEWAFYAMGAATIAFSL-GAAMLGTRRL 288
                 899****************999988889*************9977.3344433333 PP

>> YiaAB  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   7.3e-05      0.44       5      43 ..     235     277 ..     233     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
       YiaAB   5 swlsfllalvlllvGlwyl....pldlseKgfyamgllfllfs 43 
                 s l ++++++ ll+G++ +    +++ +e +fyamg     fs
  CDO71150.1 235 SILTMGIGVGTLLAGIFGMnlksHIEEHEWAFYAMGAATIAFS 277
                 67889************88889999***********9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1492  (0.0832171); expected 358.6 (0.02)
Passed bias filter:                     1004  (0.0559987); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 1995.02
//
Query:       CDO71151.1  [L=193]
Description: hypothetical protein BN946_scf184845.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1234.08
//
Query:       CDO71152.1  [L=401]
Description: hypothetical protein BN946_scf184845.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-44  151.0   0.0    3.9e-44  150.3   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.9e-08   34.0   0.0    6.5e-08   32.9   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
    1.9e-06   27.9   0.0    7.7e-06   26.0   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    6.7e-06   26.6   0.0    7.8e-05   23.1   0.0    2.3  2  AAA_16           AAA ATPase domain
    9.7e-06   25.9   0.2     0.0051   17.1   0.2    2.6  1  AAA_22           AAA domain
    4.8e-05   23.1   0.0    0.00012   21.9   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00026   20.9   0.8     0.0032   17.4   0.8    2.5  1  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    0.00083   18.7   0.0     0.0022   17.3   0.0    1.7  1  TIP49            TIP49 P-loop domain
     0.0012   19.0   0.0     0.0032   17.6   0.0    1.7  1  AAA_33           AAA domain
      0.002   17.9   0.0     0.0049   16.6   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
     0.0048   16.7   0.0      0.011   15.6   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
     0.0052   17.3   0.0      0.021   15.4   0.0    2.0  1  AAA_18           AAA domain
     0.0064   16.0   0.0       0.12   11.8   0.0    2.3  2  PhoH             PhoH-like protein
      0.007   15.8   0.0      0.016   14.6   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0098   16.1   0.0      0.021   15.1   0.0    1.5  1  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.024   14.6   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.012   15.3   0.0       0.11   12.2   0.0    2.1  2  AAA_24           AAA domain
      0.014   15.6   0.9      0.024   14.9   0.1    1.9  1  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
      0.018   14.4   0.0      0.039   13.3   0.0    1.5  1  ATPase           KaiC
      0.019   14.7   0.1      0.096   12.4   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
      0.024   13.8   0.0       0.05   12.8   0.0    1.5  1  DUF815           Protein of unknown function (DUF815)
      0.028   14.4   0.0      0.057   13.5   0.0    1.5  1  AAA_14           AAA domain
       0.03   13.8   0.0      0.052   13.0   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.04   14.3   0.0      0.075   13.4   0.0    1.5  1  RNA_helicase     RNA helicase
      0.052   12.2   0.5        2.2    6.8   0.3    2.1  2  AAA_13           AAA domain
      0.062   12.4   0.0       0.11   11.6   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1
      0.062   12.9   0.0       0.18   11.4   0.0    1.7  1  AAA_25           AAA domain
      0.074   13.4   0.1       0.41   11.0   0.0    2.2  2  AAA_19           AAA domain
      0.094   12.8   1.9         18    5.4   0.9    2.7  2  GvpK             Gas vesicle protein K
        0.1   11.9   0.0        0.2   10.9   0.0    1.5  1  Zeta_toxin       Zeta toxin
        0.1   12.4   0.0       0.38   10.5   0.0    1.8  2  AAA_11           AAA domain
       0.16   11.9   0.0        0.7    9.8   0.0    1.9  2  NACHT            NACHT domain
       0.27   11.7   3.6       0.54   10.8   3.6    1.4  1  APG6_N           Apg6 coiled-coil region
       0.41   10.4   5.0       0.96    9.3   5.0    1.6  1  DivIC            Septum formation initiator


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.0   7.5e-47   3.9e-44       1     131 [.     198     331 ..     198     332 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 7.5e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldg 95 
                 vllyGppGtGKTlla+ava++++ +f+++sgsel++ky+ge+++ +relf  a+e+a psi+f+DEid++++sr    sg+ ++e +r++ +Ll++ldg
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRgesgSGGGDSEVQRTMLELLNQLDG 295
                 79******************************************************9.******************99889999*************** PP

                 TTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  96 vkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++ ++ + vi+atnr+d ldpallr gR+drkie++
  CDO71152.1 296 FESTKN-IKVIMATNRIDILDPALLRpGRIDRKIEFP 331
                 ***755.***************************997 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.2e-10   6.5e-08       6     128 ..     198     309 ..     194     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.2e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 +ll gp g+Gkt+la+a+a + ++    k+ir+  sel +    + + +     ++  v a e+   i+++DEid i ++ ++sg+     +Vqr +L 
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHTDC----KFIRVSGSELVQ----KYIGEGSRMVRELFVMAREHApsIIFMDEIDSIGSSrGESGSGGGDSEVQRTMLE 288
                 5789*******************8....************....88888889999999999999999************999999999999******** PP

                 HHH--EE-------EE-TT-EEEEEE- CS
       AAA_2 102 ileggtltdkqgrkvdtknilfImtga 128
                 +l +    d  +   +tkni +Im+++
  CDO71152.1 289 LLNQL---DGFE---STKNIKVIMATN 309
                 *9752...3333...677777777766 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.5e-08   7.7e-06       1      79 [.     197     268 ..     197     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.5e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraes 79 
                 +vlL GppGtgK+ la+ +a+ + +++  v +++      l++++   +++ ++v   +v a +  ++i+++DE++ + s
  CDO71152.1 197 GVLLYGPPGTGKTLLARAVAHHTDCKFIRVSGSE------LVQKYI--GEGSRMVRELFVMAREhAPSIIFMDEIDSIGS 268
                 59*************************9988875......999998..45555555555533335899******998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.5e-07   7.8e-05      15      47 ..     186     218 ..     165     237 .. 0.81
   2 ?    0.7   0.0       1.1   5.9e+02     125     149 ..     245     268 ..     238     305 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.5e-07
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellra 47 
                 ++e++   +p  vll+G++G+GK+ l+r+++++
  CDO71152.1 186 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 218
                 5666666788********************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
      AAA_16 125 rllallsrderplvlvlDdlqwade 149
                 +l++ +++ + p ++++D+++ + +
  CDO71152.1 245 ELFVMARE-HAPSIIFMDEIDSIGS 268
                 45566666.778********95443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   9.7e-06    0.0051       8      41 ..     198     222 ..     193     315 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.7e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpe 41 
                 ++++G++GtGKT+l+r +++           + +
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHT---------DCK 222
                 689***************9986.........333 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.2e-07   0.00012      35      96 ..     197     266 ..     171     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.2e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvleka..gdlaalltnl......eekdvlfideihrl 96 
                  vllyGpPG Gkt la+ +a+  + k+   sg  l ++  g+ + ++ +l      ++  ++f+dei  +
  CDO71152.1 197 GVLLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKyiGEGSRMVRELfvmareHAPSIIFMDEIDSI 266
                 69***********************988888876544323333333322211111134468888888765 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.8   6.1e-06    0.0032       1      57 []      67     140 ..      67     140 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.1e-06
                     EEEEEEE-TTSSEEEEE-TTS-.....EEEEEE-GGGSSST..............--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssde.....evvvslagavprem..............LrpgDlVavdkdtgfifEkLP 57 
                     V++V++v+++ ++++Vk           ++++  g++ +e+              L p+ +Va+ +d++ i+++LP
      CDO71152.1  67 VGEVVKVMGK-NKVLVKVQPEGkysssAYLLP-VGPILNEDlvvvdfdseidiasLTPSLRVALRSDSYTIHKILP 140
                     7888888888.888888844443344233333.3444444467777777777777********************9 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.1e-06    0.0022      51      91 ..     196     234 ..     185     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysl 91 
                 ++vLl Gp+gtGkt la a++++  +d +f+ +sgse+ + 
  CDO71152.1 196 KGVLLYGPPGTGKTLLARAVAHH--TDCKFIRVSGSELVQK 234
                 89*******************97..5799********9765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.1e-06    0.0032       2      40 ..     198     238 ..     198     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.1e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgt 40 
                 vll G+pG+GK+ la+ ++ +++  ++++s  +l +++ g+
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHTDckFIRVSGSELVQKYIGE 238
                 7899*************997777889999999988877665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.3e-06    0.0049      44      71 ..     192     219 ..     172     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.3e-06
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgvea 71 
                 i++ ++++l Gp+G+GK+ la a+++++
  CDO71152.1 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT 219
                 6777899****************99864 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     2e-05     0.011       2      31 ..     198     227 ..     197     245 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG++ktll++a+a++ d++f r+ 
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHTDCKFIRVS 227
                 7999***********************995 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-05     0.021       1      25 [.     198     229 ..     198     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.......g 25 
                 +ll G+pG+GKt la++++ ++ +       +
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHTDCkfirvsgS 229
                 799***************99987777755542 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00023      0.12      18      41 ..     194     217 ..     184     224 .. 0.83
   2 ?    1.5   0.0      0.33   1.7e+02      74     114 ..     280     320 ..     251     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
                 H-SEEEEE--TTSSTTHHHHHHHH CS
        PhoH  18 kndivfaiGpaGtGKtylavalav 41 
                 + + v   Gp GtGKt+la a+a 
  CDO71152.1 194 QPKGVLLYGPPGTGKTLLARAVAH 217
                 55668899***********99986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.33
                 ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT CS
        PhoH  74 ekvdpylrplydaLkdllgaekvekllekgkievaplaymR 114
                   v+  +  l ++L+ + ++++++ ++ +++i +++ a +R
  CDO71152.1 280 SEVQRTMLELLNQLDGFESTKNIKVIMATNRIDILDPALLR 320
                 5667778889999999999*****************99999 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     3e-05     0.016      23      42 ..     196     215 ..     185     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrl 42 
                     +ll+GppG+GKt+la+++
    CDO71152.1 196 KGVLLYGPPGTGKTLLARAV 215
                   569**************987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     4e-05     0.021       2      38 ..     198     239 ..     197     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileek 38 
                 + + G+++tGKT l++a a +     ++v   E + +++ e+
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHtdckFIRVSgSELVQKYIGEG 239
                 6799***************99855444444555555555444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.5e-05     0.024      19      59 ..     195     235 ..     168     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-05
                 TEEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgveevkSPTFtlveeY 59 
                  + +lL+G+ G+GKT l+r++a++ +++ ++     lv++Y
  CDO71152.1 195 PKGVLLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKY 235
                 4459********************99995555556777777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021      0.11       4      22 ..     197     215 ..     194     226 .. 0.86
   2 ?    0.6   0.0      0.75   3.9e+02      89     131 ..     264     308 ..     253     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  +l+yGp+g+GKT la+  
  CDO71152.1 197 GVLLYGPPGTGKTLLARAV 215
                 589***********99865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.75
      AAA_24  89 nekaeskedkgdgkGygelaeefrrllkklqelrk..nvifiahe 131
                 +++++s+ + g+g G +e+++ + +ll++l+ +    n+ +i+ +
  CDO71152.1 264 DSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFEStkNIKVIMAT 308
                 566667767777778899************999998888888765 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   4.5e-05     0.024       7      55 ..       8      56 ..       3      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-05
  TMF_TATA_bd  7 agpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmke 55
                 + p v l  + +++i   E E+++  ++l rlea+r+++++ +  l +e
   CDO71152.1  8 HAPPVGLKAYYQAKIEAAELEINQKTQNLRRLEAQRNALNARVRLLREE 56
                 56667777899**************************999876555444 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.3e-05     0.039      13      37 ..     178     213 ..     161     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
      ATPase  13 k...........gGipegrvvlitGepGtGKtifal 37 
                 +            Gi + + vl++G pGtGKt++a 
  CDO71152.1 178 ElpvkhpelfeaLGIAQPKGVLLYGPPGTGKTLLAR 213
                 15555555555679*******************985 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018     0.096      21      46 ..     194     219 ..     181     238 .. 0.79
   2 ?   -2.1   0.0       5.2   2.8e+03      95     105 ..     256     266 ..     249     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
                      SSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraiheas 46 
                      ++  vl+ G  GtGK+llara+ +++
       CDO71152.1 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219
                      56789***************996544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.2
                      SEEEEETGGGS CS
  Sigma54_activat  95 GtlfLDeigel 105
                      +++f+Dei ++
       CDO71152.1 256 SIIFMDEIDSI 266
                      689*****987 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.5e-05      0.05      52     115 ..     194     262 ..     144     267 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.5e-05
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDD 115
                 + + vLL+G  GtGK  l +a+ +++  + +r+   e+ ++ + e +++v++l    +++   i+f+D 
  CDO71152.1 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCKFIRVSgsELVQKYIGEGSRMVRELFvmaREHAPSIIFMDE 262
                 44679********************99999988433777888888888777654222555567888886 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   0.00011     0.057       3      76 ..     196     266 ..     194     311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 k +++ G+  +GKT l++ ++++      +++ ++  +  +k + + +++ ++++ +++e+  +++f+DEi  +
  CDO71152.1 196 KGVLLYGPPGTGKTLLARAVAHHTD---CKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 266
                 568999*************997777...8999999998777666655434433333334468899******987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001     0.052      30      58 ..     192     220 ..     184     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +++ k vll+Gp GtGKt++++ + ++ d
  CDO71152.1 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD 220
                 677899***************99988877 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00014     0.075       1      57 [.     198     245 ..     198     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00014
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidD 57 
                   ++lyGp+g+GK++la+ +a++          d  ++r + ++ +++Y g+   ++ +
    CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHT---------DCKFIRVSGSELVQKYIGEGSRMVRE 245
                   689**************44433.........33334555666666665555555555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3    0.0042       2.2     414     484 ..      18      88 ..      13      92 .. 0.87
   2 ?    3.3   0.0      0.05        26      20      39 ..     199     218 ..     197     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0042
      AAA_13 414 ykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLkfeeekk 484
                 y+ k++++e +i++ +++l+  ea+ ++l+++++ L+++l+  +++ + + + +k +G+++   k+++e+k
  CDO71152.1  18 YQAKIEAAELEINQKTQNLRRLEAQRNALNARVRLLREELQLLHEPGSYVGEVVKVMGKNKVLVKVQPEGK 88 
                 7889999999*****************************99999999999988888898888888877766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.05
      AAA_13  20 liYGwNGaGKTtLSrllrsl 39 
                 l+YG  G+GKT L+r+ +  
  CDO71152.1 199 LLYGPPGTGKTLLARAVAHH 218
                 68*************98875 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002      0.11     117     138 ..     198     219 ..     194     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ tGkt la+a a+ +
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHHT 219
                 899****************976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00033      0.18      36      56 ..     198     218 ..     192     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
      AAA_25  36 allaGapgtGKttlaldlala 56 
                 +ll+G+pgtGKt la  +a++
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAHH 218
                 69*************998887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.7     4e+03      65      75 ..     128     138 ..      98     167 .. 0.63
   2 ?   11.0   0.0   0.00078      0.41       8      33 ..     193     218 ..     188     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.7
      AAA_19  65 lgaeatTiHrl 75 
                 l  + +TiH++
  CDO71152.1 128 LRSDSYTIHKI 138
                 23335666665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00078
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhival 33 
                 ++ k +l+ ++pGtGKT + +++ ++
  CDO71152.1 193 AQPKGVLLYGPPGTGKTLLARAVAHH 218
                 5677899**********877666555 PP

>> GvpK  Gas vesicle protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.9     0.035        18      43      76 ..      26      59 ..      19      63 .. 0.87
   2 ?    5.3   0.0     0.038        20      50      81 ..     354     385 ..     344     388 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.035
        GvpK 43 deeierlgetLmkleeeleelkesfgleeedLnl 76
                + ei++  ++L++le++ + l+++++l +e+L+l
  CDO71152.1 26 ELEINQKTQNLRRLEAQRNALNARVRLLREELQL 59
                45777889***********************986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.038
        GvpK  50 getLmkleeeleelkesfgleeedLnldLgpl 81 
                 g +L++l+e++ +  +   +++ed++  + ++
  CDO71152.1 354 GINLRALAEKMGQCSGAEHVTQEDFEFAIAKV 385
                 789**********************9877665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00038       0.2      14      51 ..     193     228 ..     185     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00038
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrldp 51 
                  +Pk +ll G pG GK+ la++++  +  + +++r+++
  CDO71152.1 193 AQPKGVLLYGPPGTGKTLLARAVAHHT--DCKFIRVSG 228
                 58*********************9987..677777766 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.3   1.7e+03     152     180 ..      28      56 ..       5      71 .. 0.56
   2 ?   10.5   0.0   0.00071      0.38      17      40 ..     195     218 ..     184     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.3
      AAA_11 152 lkkskekskskleqerrklkkerkelske 180
                 + ++k+++ ++le++r++l++ ++ l++e
  CDO71152.1  28 EINQKTQNLRRLEAQRNALNARVRLLREE 56 
                 22333344444444444444444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00071
      AAA_11  17 seitliqGPPGtgKTktivellsq 40 
                 ++ +l+ GPPGtgKT    ++ ++
  CDO71152.1 195 PKGVLLYGPPGTGKTLLARAVAHH 218
                 45589**********776666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0013       0.7       3      22 ..     198     217 ..     196     222 .. 0.89
   2 ?   -0.8   0.0       2.4   1.3e+03      66     114 ..     240     291 ..     220     308 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 v+l G++G GKT L++ +a+
  CDO71152.1 198 VLLYGPPGTGKTLLARAVAH 217
                 799*************9987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.4
                 -SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.............HHHHHC CS
       NACHT  66 aapvsevwavllelperlLlilDglDelvtdlgq....kekqpvrtlLselir 114
                 ++ v+e +++  e++ ++ + +D +D + +  g+     +  +v++ + el++
  CDO71152.1 240 SRMVRELFVMAREHAPSIIF-MDEIDSIGSSRGEsgsgGGDSEVQRTMLELLN 291
                 45566655555555555544.79999999988888877555555555555555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.6     0.001      0.54      53      95 ..      19      61 ..      14      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.001
      APG6_N 53 eeeleklekeeeelleeLkelekereeleaelaaleeeleale 95
                + ++e+ e e +++ ++L++le++r +l+a ++ l+eel+ l+
  CDO71152.1 19 QAKIEAAELEINQKTQNLRRLEAQRNALNARVRLLREELQLLH 61
                678999********************************99776 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.0    0.0018      0.96      18      51 ..      21      54 ..      15      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                ++ + + ei++++++l +l a++++L+a+v++L+
  CDO71152.1 21 KIEAAELEINQKTQNLRRLEAQRNALNARVRLLR 54
                5667889**************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.51
# Mc/sec: 2349.24
//
Query:       CDO71153.1  [L=389]
Description: hypothetical protein BN946_scf184845.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.54
# Mc/sec: 2159.46
//
Query:       CDO71154.1  [L=284]
Description: hypothetical protein BN946_scf184845.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1986.85
//
Query:       CDO71155.1  [L=784]
Description: hypothetical protein BN946_scf184845.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-48  165.4   0.0    1.6e-48  165.0   0.0    1.2  1  AAA_12         AAA domain
    7.5e-25   88.2   0.0    2.3e-12   47.3   0.0    2.3  2  AAA_11         AAA domain
    8.9e-13   48.4   0.0    5.6e-12   45.8   0.0    2.3  2  AAA_30         AAA domain
    7.2e-10   39.4   0.0    5.8e-09   36.4   0.0    2.5  2  AAA_19         AAA domain
    3.5e-05   23.9   0.0    7.4e-05   22.8   0.0    1.6  1  ResIII         Type III restriction enzyme, res subunit
    0.00027   20.6   0.0     0.0081   15.7   0.0    2.4  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
    0.00041   19.9   0.0      0.041   13.3   0.0    2.3  2  PhoH           PhoH-like protein
  ------ inclusion threshold ------
      0.013   15.0   0.4       0.22   10.9   0.1    2.2  2  UvrD_C         UvrD-like helicase C-terminal domain
      0.014   14.8   0.0      0.051   13.0   0.0    2.0  1  Mg_chelatase   Magnesium chelatase, subunit ChlI
      0.039   13.8   0.4        0.2   11.5   0.4    2.1  1  UvrD_C_2       UvrD-like helicase C-terminal domain
      0.044   12.8   0.0       0.11   11.5   0.0    1.7  1  T2SSE          Type II/IV secretion system protein
      0.049   14.0   0.0       0.15   12.4   0.0    1.8  1  AAA_16         AAA ATPase domain
      0.055   13.7   0.0       0.29   11.4   0.0    2.2  2  AAA_22         AAA domain
      0.074   12.2   0.0         11    5.1   0.0    2.2  2  PIF1           PIF1-like helicase
       0.13   12.2   0.0       0.34   10.9   0.0    1.7  1  AAA_5          AAA domain (dynein-related subfamily)
       0.22   10.6   0.0        2.7    7.1   0.0    2.1  2  DAP3           Mitochondrial ribosomal death-associated prote


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   1.4e-51   1.6e-48       1     198 [.     494     704 ..     494     705 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 1.4e-51
      AAA_12   1 lerSlferllkke.........kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele.aqealeepleplvfidvekseeekekkeksyiNe 89 
                 l++S +erl+++           ++++ L+ ++R+h++I+ +p+++fY+g+L+ a   ++ +++   ++l +p+ p+vf+++ +++e+++++  sy+N 
  CDO71155.1 494 LDKSFLERLMERPlysntqtgrGRSYIKLTKNFRSHSAILTYPNDKFYDGELEVAGAPSQINSFiGSTQLVNPKFPVVFHAIFGENERESTS-PSYFNI 591
                 5789999999998899999998999****************************998666655553578899************999999986.****** PP

      AAA_12  90 eEaelvvklvekllkkgsee.erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn.......ekkeigflkderr 180
                  Ea+ vv++v++llk+ ++    k+ig+itpY aqv+ +++ l++++ ++    ++v+tv++fQG+e+++ii+s+VRsn       +k ++gf+++ rr
  CDO71155.1 592 DEATEVVEYVKDLLKDRQRPiRSKDIGIITPYFAQVSKIRQLLRKANITD----LKVATVEEFQGQERRIIIISTVRSNrdllsydAKFTLGFVSNPRR 686
                 *****************9998889********************877776....9***********************988888777779********* PP

      AAA_12 181 lNValTRAkskliivGnk 198
                 +NVa+TRA+  l++vG++
  CDO71155.1 687 FNVAVTRAQALLVVVGDP 704
                 ****************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   2.1e-15   2.3e-12       2      76 ..     302     372 ..     301     384 .. 0.90
   2 !   38.6   0.0   9.2e-13     1e-09     193     260 ..     414     486 ..     408     487 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.1e-15
      AAA_11   2 lndsqreaiksalsese...itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                  n+ q++a++s+l+ ++    ++i GPPGtgKT + ve + ql        + ++++riL+CapSN A D l++rl++
  CDO71155.1 302 SNRAQLQAVQSILRMKAgaaPFIIFGPPGTGKTVVDVEAILQL-------LRTQPNARILACAPSNSAADLLAQRLMS 372
                 6999******9999999888789********************.......35799*********************98 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 9.2e-13
      AAA_11 193 ldeaeivltTlsgag.sklleklakkfdvviIDEAaqavEpstliPlrlga....kkvvLvGDpkQLpatvis 260
                 l + +++++T+  a+ + ++   ++ f  + IDEA+q  Ep++l +  + +     +vvL GDpkQL +++ s
  CDO71155.1 414 LLSYKVIVSTCGNASfAYNIGMPQGHFTHIFIDEAGQGSEPEVLTAGIKTMvskdTRVVLSGDPKQLGPVIRS 486
                 566789*****88752566777777*******************98655444666***************987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0     5e-15   5.6e-12       3     140 ..     303     492 ..     301     501 .. 0.77
   2 ?   -2.6   0.0       3.5   3.9e+03     111     126 ..     690     705 ..     684     708 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 5e-15
      AAA_30   3 naeQaaavealltsgd..rvavltGpAGtGKtta.lkalreaweaa.ggrviglAptgkaAkvLaeelgi.......eastiakllkrlk......... 81 
                 n  Q +av+++l  ++     ++ Gp+GtGKt + ++a+ ++++++ + r++++Ap++ aA+ La+ l         +++ i +     +         
  CDO71155.1 303 NRAQLQAVQSILRMKAgaAPFIIFGPPGTGKTVVdVEAILQLLRTQpNARILACAPSNSAADLLAQRLMSlspsemfRCNAIFRN----Ratlpeelvp 397
                 7889*****99876551155799*********9978999*******99*****************75542222211133322222....1344466777 PP

      AAA_30  82 .......................................grarlepg.tllivDEagmvdtkq.laallkaaekagakvilvGDerQlasVeaGgvlrd 139
                                                        +      + t + +DEag  +  + l+a +k + +++++v+l GD++Ql++V + ++ r+
  CDO71155.1 398 yssfrdnhfalpalktllsykvivstcgnasfaynigmpQ-----GHfTHIFIDEAGQGSEPEvLTAGIKTMVSKDTRVVLSGDPKQLGPVIRSSIARE 491
                 7788888888899999999999999999999998664431.....3369*********98765156678888888****************99999887 PP

      AAA_30 140 l 140
                 l
  CDO71155.1 492 L 492
                 7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
      AAA_30 111 aaekagakvilvGDer 126
                 a+++a+a +++vGD+ 
  CDO71155.1 690 AVTRAQALLVVVGDPS 705
                 67888999******85 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   5.2e-12   5.8e-09       6     144 ..     315     483 ..     310     485 .. 0.69
   2 ?   -1.8   0.0       3.2   3.6e+03     102     124 ..     585     607 ..     567     611 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.2e-12
      AAA_19   6 e.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal................... 77 
                 + ++ + ++++ ++pGtGKT v ++++  l++++  + ++il++a+ + Aa+ l++rl + + +       a       +                   
  CDO71155.1 315 RmKAGAAPFIIFGPPGTGKTVVDVEAILQLLRTQ--PNARILACAPSNSAADLLAQRL-MSLSPsemfrcnA-------Ifrnratlpeelvpyssfrd 403
                 446778899*************999999999988..559*******************.4455535555550.......34444455555556644444 PP

      AAA_19  78 ...........ldfddlltealelle.............eaeeekklqeee.llivDEfqdvd..elqyrLlkallgekkklllvGDpdQliyv 144
                            l                             +   +   ++ ++++DE+ + +  e+  + +k+++ ++++++l GDp+Ql +v
  CDO71155.1 404 nhfalpalktlL-------------SykvivstcgnasfAYNIGMPQ-GHFtHIFIDEAGQGSepEVLTAGIKTMVSKDTRVVLSGDPKQLGPV 483
                 444444433332.............0334444444444433444444.4456******9666658888999*****99999*********9765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.2
      AAA_19 102 eeellivDEfqdvdelqyrLlka 124
                 +  ++ +DE+ +v e  + Llk 
  CDO71155.1 585 SPSYFNIDEATEVVEYVKDLLKD 607
                 556899*******9999999985 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   6.6e-08   7.4e-05       5     167 ..     303     475 ..     299     479 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.6e-08
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--....... CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka....... 96 
                 +  Q +a++++l  +k  +   ++i  + GtGKT+v +++i +ll+ +++ ++l  +p++s  + + ++++++++++  + + +++++   +       
  CDO71155.1 303 NRAQLQAVQSIL-RMK-AGAAPFIIFGPPGTGKTVVDVEAILQLLRTQPNARILACAPSNSAADLLAQRLMSLSPSEMFRCNAIFRNRATLPeelvpys 399
                 568999***998.566.9******************************************999999999988888886664444444444444555555 PP

                 .................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHH.HHHT---SEEEEEES CS
      ResIII  97 ..........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswre.ilekfkeavllglTA 167
                             k   + k++v+t   ++ +       +  + +++f  i+iDEa   ++ +  ++ i+ ++++ +++ l++
  CDO71155.1 400 sfrdnhfalpALKTLLSYKVIVSTCGNASFAY------NIGMPQGHFTHIFIDEAGQGSEPEVLTAgIKTMVSKDTRVVLSG 475
                 55555666666666777777777776666666......77888888888888888777776655555666666666666665 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.2e-06    0.0081      14      72 ..     321     377 ..     303     402 .. 0.84
   2 ?    2.1   0.0       0.1   1.2e+02     254     294 ..     437     479 ..     425     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.2e-06
                    SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHC CS
  UvrD-helicase  14 gpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkka 72 
                     p+++   +G+GKT v +e il+l++++   + ril+    n Aa+ l +R+ ++  ++
     CDO71155.1 321 APFIIFGPPGTGKTVVDVEAILQLLRTQ--PNARILACAPSNSAADLLAQRLMSLSPSE 377
                    57889999********************..999******************99865544 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
                    HHHSSEEEESSGGG-BH..HHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 254 rerykeiliDEyQDTnk..iQyrilkllasgheelfmvGDpkQ 294
                    + ++ +i+iDE+ + ++  +  + +k+++s+   +++ GDpkQ
     CDO71155.1 437 QGHFTHIFIDEAGQGSEpeVLTAGIKTMVSKDTRVVLSGDPKQ 479
                    679*********6666423556678888888889********9 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.7e-05     0.041       6      61 ..     303     362 ..     300     373 .. 0.79
   2 ?    3.9   0.0     0.028        31     122     158 ..     442     480 ..     439     496 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
                 SHHHHHHHHHHH....H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T CS
        PhoH   6 tkeQkeylealk....kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea 61 
                 +++Q ++++++          +++Gp GtGKt + v + +++l+ +   ri+   p+ +a
  CDO71155.1 303 NRAQLQAVQSILrmkaGAAPFIIFGPPGTGKTVVDVEAILQLLRTQPNARILACAPSNSA 362
                 567777777777443233367899**********************99999988887655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.028
                 EEEE-SG.GG--HHHHHH.HHTTB-TT-EEEEEE----- CS
        PhoH 122 fvilDEA.Qnttkeqmkm.fltRlGenskvvvtGdvtqi 158
                  +++DEA Q  ++e +   + t + ++++vv+ Gd++q 
  CDO71155.1 442 HIFIDEAgQGSEPEVLTAgIKTMVSKDTRVVLSGDPKQL 480
                 5899**9666666666543668899************96 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.22       1     108 [.     520     650 ..     520     668 .. 0.74
   2 ?    2.0   0.0       0.1   1.1e+02     329     344 ..     685     700 ..     683     703 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekek........................ktvekgekivvleaeteeeEaekiaatikall...eknekl 72 
                 i+L+kN+RS + +l   n+ +     + a  + +                        +    +e+  +  +  + +Ea  +++ +k+ll   ++ +  
  CDO71155.1 520 IKLTKNFRSHSAILTYPNDKFYDGELEVAGAPSQinsfigstqlvnpkfpvvfhaifgE----NERESTSPSYFNIDEATEVVEYVKDLLkdrQRPIRS 614
                 789************9999884444433333333458999999*********8844444....4455555555666777777777777776666999** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  73 ediavLvRsnkdadkiskaLkkegipfnvvdeekfF 108
                 +di +++   ++  ki + L+k +i   +v + + F
  CDO71155.1 615 KDIGIITPYFAQVSKIRQLLRKANITDLKVATVEEF 650
                 ************************876665544444 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.1
                 xxxxxxxxxxxxxxxx RF
      UvrD_C 329 RlfYVaiTRAkkrLfi 344
                 R f Va+TRA+  L++
  CDO71155.1 685 RRFNVAVTRAQALLVV 700
                 7799********9987 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.5e-05     0.051       8      66 ..     306     365 ..     300     381 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
  Mg_chelatase   8 qeeakraleiaaaGgHnlllvGppGsGKtml.akrlpsllpplseeealevakiasvagk 66 
                   q +a + +    aG   ++++GppG+GKt++  +++ +ll    ++ +l +a  +s a+ 
    CDO71155.1 306 QLQAVQSILRMKAGAAPFIIFGPPGTGKTVVdVEAILQLLRTQPNARILACAPSNSAADL 365
                   5566666666789999*************9956889999999999999999999888873 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00017       0.2       5      52 .]     645     701 ..     642     701 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
    UvrD_C_2   5 ltihkaQGsefpaVivfdpdlaaarmgel............rrrlLYtavTRAreklilv 52 
                  t+  +QG+e +++i+   +  + r + l            + r + +avTRA++ l++v
  CDO71155.1 645 ATVEEFQGQERRIIII--STVRSNR-DLLsydakftlgfvsNPRRFNVAVTRAQALLVVV 701
                 699999*****99999..4444444.334789999999999999999***********98 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.11     107     161 ..     299     354 ..     232     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
       T2SSE 107 dlgaeealkekiaevlrkavrerglilvsGgTgsGKttll.yallkeinks.deriv 161
                  ++ ++a+ ++++++lr   +    +++ G+ g+GKt++   a+l+ + ++ + ri+
  CDO71155.1 299 AIRSNRAQLQAVQSILRMK-AGAAPFIIFGPPGTGKTVVDvEAILQLLRTQpNARIL 354
                 4566778889*******99.888999***********98549999999998677775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.15       7      51 ..     305     348 ..     302     406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKssl.vrellralekd 51 
                 ++l++++s+l+  ++g     ++ G++G+GK+ + v+++l+ l+++
  CDO71155.1 305 AQLQAVQSILR-MKAGA-APFIIFGPPGTGKTVVdVEAILQLLRTQ 348
                 79999999998.55666.4577**********99558888766666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.29       7      56 ..     322     365 ..     316     396 .. 0.68
   2 ?   -1.9   0.0       3.3   3.6e+03      94     131 ..     442     477 ..     432     482 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56 
                   +++G++GtGKT++  +   ql +       +p      ++ s+s +dl
  CDO71155.1 322 PFIIFGPPGTGKTVVDVEAILQLLRT------QPNARILACAPSNSAADL 365
                 579***********977777777543......333333344444444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
      AAA_22  94 lliiDEaqhlrs.eealeeLrsllnlsrkgvqliLvGtp 131
                  + iDEa    s +e+l+   + +   +k+++++L G p
  CDO71155.1 442 HIFIDEAGQG-SePEVLTAGIKTMV--SKDTRVVLSGDP 477
                 5778888886.43778877777777..899999999998 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0097        11       6      67 ..     306     367 ..     301     376 .. 0.72
   2 ?    4.8   0.0     0.012        13     143     160 ..     470     487 ..     467     535 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0097
                 HHHHHHHH......HCTS-EEEEESTTSSCHHH.HHHHHHHCHC.TCCCEEEEESSHHHHHCC. CS
        PIF1   6 QkkvfdaiieavlnekgklfFvtGsgGtgKtfl.wkallkklrs.egkivlavAssGvAallle 67 
                 Q +++++i+       +  f + G  GtgKt +  +a+l+ lr+  +  +la A s  Aa ll 
  CDO71155.1 306 QLQAVQSILRMK--AGAAPFIIFGPPGTGKTVVdVEAILQLLRTqPNARILACAPSNSAADLLA 367
                 555555553322..223346667*********96789999999944678999999999998884 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
                 EEEEE--TTS-----SSS CS
        PIF1 143 tvvlgGDfrQilPviekg 160
                  vvl GD +Q+ Pvi+ +
  CDO71155.1 470 RVVLSGDPKQLGPVIRSS 487
                 69*************765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0003      0.34       2      48 ..     323     372 ..     322     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
                 EEEE--SSSSHHHH.HHHGGGGB..S--EEEEE--TT--HHHHH--B--. CS
       AAA_5   2 vlLvGppGtgKsel.aerlaaal..nreveyvqltrdtteedlkgrreik 48 
                 +++ GppGtgK+ + +e ++++l  + +  + ++  + +++dl+ +r ++
  CDO71155.1 323 FIIFGPPGTGKTVVdVEAILQLLrtQPNARILACAPSNSAADLLAQRLMS 372
                 7999********9989999***9998999999999999999999999875 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.2   2.3e+02      25      39 ..     322     336 ..     305     343 .. 0.85
   2 ?    7.1   0.0    0.0024       2.7     135     216 ..     566     645 ..     557     674 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.2
                 EEEEE-SSSSSTTTT CS
        DAP3  25 rlvltGekgsGKSvl 39 
                  +++ G +g+GK+v+
  CDO71155.1 322 PFIIFGPPGTGKTVV 336
                 599**********96 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0024
                 SSSHHHHHHHHHHHHHHHTTSS--EEEEEE-GGGGSS-.BS---TTS--B-GGGBHHHHTTHHH..HS--SSS-EEEEE---S CS
        DAP3 135 aksawdvfqallkeLkaqskgrvpvlvtvDglnallkn.tkyksadkkpihahdLtlvkhfldllsgksklknggvvvaLaat 216
                 +k+ + vf a++ e +++s+   p ++ +D++  +++   ++ ++ ++pi+++d+ ++ + +  +s+ ++l +++ ++ L+  
  CDO71155.1 566 PKFPV-VFHAIFGENEREST--SPSYFNIDEATEVVEYvKDLLKDRQRPIRSKDIGIITPYFAQVSKIRQLLRKANITDLKVA 645
                 55566.999*****999999..***************9999*********************999999999988888877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.59
# Mc/sec: 3981.75
//
Query:       CDO71156.1  [L=601]
Description: hypothetical protein BN946_scf184845.g26, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-46  155.9   0.0    1.3e-45  155.5   0.0    1.2  1  AAA_12           AAA domain
    3.7e-11   43.3   0.0    6.6e-11   42.5   0.0    1.4  1  AAA_11           AAA domain
    1.6e-06   27.9   0.0      4e-06   26.7   0.0    1.6  1  AAA_30           AAA domain
     0.0052   16.2   0.1       0.31   10.4   0.0    2.2  2  UvrD_C           UvrD-like helicase C-terminal domain
     0.0079   16.0   0.0        1.6    8.4   0.0    2.2  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.016   15.6   0.0      0.093   13.1   0.0    2.1  2  AAA_19           AAA domain
      0.061   13.2   0.4       0.31   10.9   0.4    2.2  1  UvrD_C_2         UvrD-like helicase C-terminal domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   5.1e-49   1.3e-45       3     198 ..     315     522 ..     313     523 .. 0.88

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 5.1e-49
      AAA_12   3 rSlferllkke........kekvvlLdtqYRmhpeIsrfpsklfYkgkLk.daesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEa 92 
                 +S +erl+++           + + L  ++R+h++I+++p+++fY+g+L+ +++ ++ ++l    +l +p  p+vf+ +++++e+++++  sy+N  Ea
  CDO71156.1 315 TSYLERLMDRPvydpatkrGLSFIKLVKNFRSHNAILEYPNEQFYDGELEvCGPPATINSLLRSPTLVNPHWPVVFHYISGENERESTS-PSYFNIDEA 412
                 677788887777777776667788999**********************83455555555555899*****************999986.********* PP

      AAA_12  93 elvvklvekllkkgsee.erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn.......ekkeigflkderrlNV 183
                 + v+++++kll++   +   ++igvitpY aqv+ l+  l++++ ++    ++v++v++fQG+e++vii+s+VRs+       +k ++gf+++ rr+NV
  CDO71156.1 413 TEVLEYIKKLLNDRRYSiRAEEIGVITPYYAQVRKLRLLLRRENIDD----VKVGSVEEFQGQERRVIIISTVRSTrdllsydAKFTLGFVSNPRRFNV 507
                 ************998887789********************877666....9***********************877777767779************ PP

      AAA_12 184 alTRAkskliivGnk 198
                 a+TRA+  l+++G++
  CDO71156.1 508 AVTRAQALLVVIGDA 522
                 *************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.6e-14   6.6e-11     195     260 ..     236     305 ..     230     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.6e-14
      AAA_11 195 eaeivltTlsgag.sklleklakkfdvviIDEAaqavEpstliPlrlga...kkvvLvGDpkQLpatvis 260
                 + +++++T+  a+ + ++   ++ f  + +DEA+qa Ep++l +++  a    +v+L GDpkQL +++ s
  CDO71156.1 236 TYRVIVSTCGNASfAYNIGLPNGHFTHIFVDEAGQASEPEVLTAIKALAspaTQVILSGDPKQLGPVIRS 305
                 568999999877515555555669*********************7766678***************987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.6e-09     4e-06      90     140 ..     261     311 ..     241     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.6e-09
      AAA_30  90 tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdl 140
                 t + vDEag ++  ++ + +ka+++  ++vil GD++Ql++V + +v r+l
  CDO71156.1 261 THIFVDEAGQASEPEVLTAIKALASPATQVILSGDPKQLGPVIRSSVAREL 311
                 6789*********************9*******************999988 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00012      0.31       1     113 [.     338     473 ..     338     486 .. 0.79
   2 ?    3.6   0.0     0.014        35     329     345 ..     503     519 ..     501     523 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx................xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrrale...kek................ktvekge..kivvleaeteeeEaekiaatikall...eknekledi 75 
                 i+L kN+RS + +l+  n+ +     + +     +++                   ++ge  +  +  +  + +Ea  + + ik+ll      +  e+i
  CDO71156.1 338 IKLVKNFRSHNAILEYPNEQFYDGELE-VCGppaTINsllrsptlvnphwpvvFHYISGEneRESTSPSYFNIDEATEVLEYIKKLLndrRYSIRAEEI 435
                 7899***********999999333333.33243433388999999******995555555336677777778999999999999999877788999*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  76 avLvRsnkdadkiskaLkkegipfnvvdeekfFkreei 113
                  v++   ++ +k+   L++e+i  ++v++ + F+ +e 
  CDO71156.1 436 GVITPYYAQVRKLRLLLRRENIDDVKVGSVEEFQGQER 473
                 **********************9999997777776665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
                 xxxxxxxxxxxxxxxxx RF
      UvrD_C 329 RlfYVaiTRAkkrLfis 345
                 R f Va+TRA+  L+++
  CDO71156.1 503 RRFNVAVTRAQALLVVI 519
                 7799**********997 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00061       1.6      63     103 ..     260     302 ..     251     321 .. 0.79
   2 !    5.3   0.0    0.0056        14     183     233 ..     455     519 ..     377     520 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00061
  Viral_helicase1  63 gkililDEylllhaGyill.laa.lskaklvilfGDplQipfh 103
                      +  +++DE++++   ++l  + a  s a +vil GDp+Q +  
       CDO71156.1 260 FTHIFVDEAGQASEPEVLTaIKAlASPATQVILSGDPKQLGPV 302
                      56789*******999999943331466789*********8765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0056
  Viral_helicase1 183 r.....evttvhevqGltfdkVtlvllketdlelis..........esrenllvAlTRhrkslvil 233
                      +     +v  v+e qG++  + ++ + ++t  +l+s          +++  + vA TR+   lv++
       CDO71156.1 455 EniddvKVGSVEEFQGQERRVIIISTVRSTR-DLLSydakftlgfvSNPRRFNVAVTRAQALLVVI 519
                      2555667889********9988887776664.5566689******988***********9888765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-05     0.093     104     144 ..     260     302 ..     249     304 .. 0.90
   2 ?   -1.0   0.0      0.78     2e+03      99     123 ..     401     424 ..     374     429 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
      AAA_19 104 e.llivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyv 144
                 + +++vDE+ + + +   + +kal+ ++++++l GDp+Ql +v
  CDO71156.1 260 FtHIFVDEAGQASePEVLTAIKALASPATQVILSGDPKQLGPV 302
                 349******99999**************99*********9765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.78
      AAA_19  99 klqeeellivDEfqdvdelqyrLlk 123
                    +  ++ +DE+ +v e +++Ll+
  CDO71156.1 401 ST-SPSYFNIDEATEVLEYIKKLLN 424
                 33.566899*******999999996 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00012      0.31       5      52 .]     463     519 ..     459     519 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
    UvrD_C_2   5 ltihkaQGsefpaVivfdpdlaaarmgel............rrrlLYtavTRAreklilv 52 
                  ++  +QG+e +++i+   +  + r + l            + r + +avTRA++ l+++
  CDO71156.1 463 GSVEEFQGQERRVIII--STVRSTR-DLLsydakftlgfvsNPRRFNVAVTRAQALLVVI 519
                 5788999999999999..4444444.334678999999999999999**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3635.84
//
Query:       CDO71157.1  [L=292]
Description: hypothetical protein BN946_scf184845.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-09   34.6   0.3    1.4e-08   33.9   0.0    1.5  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   7.9e-13   1.4e-08     334     407 ..       2      78 ..       1      79 [. 0.86
   2 ?   -3.8   0.4      0.22     4e+03     247     267 ..     254     274 ..     227     289 .. 0.45

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 7.9e-13
  Pkinase_fungal 334 SenNilitdskkegerkglLiDLDlakelsdd.ssesgarertGTleFmaievlkgee..HsyrhDLESffyvllwi 407
                     S++Nili+d ++ + + glL+D Dlak+ ++  + + ++  r GT +Fm+  +       H   +DL S++ +l w+
      CDO71157.1   2 SVGNILIYDGDRASPPIGLLSDWDLAKTQQQIfNLRPSQSSRSGTWQFMSATLQAYPWkpHLLPDDLKSIMHILSWL 78 
                     99*************************99875244456699*********9977752256****************7 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.22
  Pkinase_fungal 247 elsskaevklkksesskkvek 267
                     + +++a+ ++k+  +s ++++
      CDO71157.1 254 PKPKRAHAASKEGITSASTHS 274
                     223333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1886.96
//
Query:       CDO71158.1  [L=544]
Description: hypothetical protein BN946_scf184845.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-53  181.6   0.1      2e-53  180.8   0.1    1.4  1  Creatinase_N_2   Creatinase/Prolidase N-terminal domain
    3.3e-36  125.0   0.0    5.1e-36  124.3   0.0    1.3  1  Peptidase_M24    Metallopeptidase family M24
    2.6e-24   85.0   0.4    7.9e-24   83.5   0.1    2.0  2  Peptidase_M24_C  C-terminal region of peptidase_M24
    4.7e-07   30.5   0.2      0.033   14.8   0.1    2.6  2  Creatinase_N     Creatinase/Prolidase N-terminal domain


Domain annotation for each model (and alignments):
>> Creatinase_N_2  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.1   4.5e-57     2e-53       1     161 []      73     241 ..      73     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 4.5e-57
                     T---------EE--HHHHSS-HHHHHHHHHHHHHHTT-SEEEE-SHHHHHHHTTEE--SBTTB----EEEEEES.S-EEEEE-GGG-..-HHHHH CS
  Creatinase_N_2   1 drParpkepvfvlpeeyaGesvaeKlerlrkelkkkkadalvlsaldeiAWllNlRGsDipynPvflsyaivtkdekatLFvdeeklteevkehl 95 
                     drParp+++vf l+++yaGes+a+Kl+r+r+e++kk+++alv+++lde+AWl+NlRGsDi+ynPvf++ya+v++ ++a+LFv+e++l+ +v++hl
      CDO71158.1  73 DRPARPANKVFPLDVKYAGESHADKLKRVREEIQKKGTKALVVNMLDEVAWLFNLRGSDIDYNPVFFAYALVDQ-DRARLFVNESQLDRDVRDHL 166
                     7***********************************************************************87.5******************* PP

                     HHTTEEEE-GGGHHHHHHHHHH....HH----EEE-TTSBHHHHHHH-.......GGGEEE-S-HHHHHHHC--HHH CS
  Creatinase_N_2  96 eengveikpyeevvsdlkalas....askkkvlldpsktsyalasalk.......ekkvveeespiallKavKNevE 161
                       ++ve++py++++s+l +l +    ++ +kvl++ +k+s+a+a+a+        +++vv ++sp+++lKa+KN+vE
      CDO71158.1 167 G-AEVEVHPYDSFFSYLIHLGAelnaQKDAKVLVS-DKASLAVAEAIGkfrtdvvKDRVVVARSPVTDLKAIKNAVE 241
                     4.68***********99999877765558999998.9*********9668888888888999*************99 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.1e-39   5.1e-36       2     209 .]     244     471 ..     243     471 .. 0.80

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.1e-39
                    HHHHHHHHHHHHHHHHHHHHHT......TCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGG....STTTBCSSSB...--TTEEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikp......gvterelaaeieattlkrhgarglafppivasgenaa....vlhytpndrv...lkegdlvlidagae 84 
                     +r+++  + aal + ++++++        +e ++a+ +e+++ +   ++gl+fp+i a+g+n+     ++hy+p+ ++   +k+++++l+d+ga+
     CDO71158.1 244 GFRQSHIRDGAALVRYFAWLEEqlnaeqELSESQVADQLEKYRSEMDLFKGLSFPTISATGPNGGstpaIVHYDPDPNDcaiVKKEQVYLCDSGAQ 339
                    689****************99734433357**********99666666***************9877778***8853333468************* PP

                    ETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-ST.TSBHHHHHHHHHHHHHHT.....TBCCGBSS......CSEEEESSSSSEEEEE. CS
  Peptidase_M24  85 ydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkp.Gvtlseidaaarevlesa.....glakffph......glGHgvGlevhdegps. 167
                    y   ++D+trT+++G+++ e+++ ++ vl+++ a+  av+p G+t++  +a a+++++ a     g+ ++f        glGH +   vh++ p+ 
     CDO71158.1 340 YLDGTTDVTRTLHFGTPSVEEKRCFTRVLQGHIAIDTAVFPnGTTGA--HAPACDLFAMAeyvrhGV-DPFARrplwedGLGHFLN--VHEG-PHg 429
                    ***************88889************88888***9777654..333344433220122266.444445767779999988..**98.985 PP

                    ESS..STTCSSB--TTBEEEEEEEEEEETTTEEEEEBEEEEEES CS
  Peptidase_M24 168 vsr..esndgrkleeGmvftiEpgiyfapgeggvriedtvlvte 209
                    +    ++ ++++l++Gm++++Epg+y a+g +g+rie++v+v+e
     CDO71158.1 430 IGVriAY-NSTPLKPGMTVSNEPGFY-ADGRYGIRIENVVVVRE 471
                    4323334.6*****************.99*************86 PP

>> Peptidase_M24_C  C-terminal region of peptidase_M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.3     6e+03      37      56 ..     100     124 ..      94     125 .. 0.47
   2 !   83.5   0.1   1.8e-27   7.9e-24       2      63 .]     483     544 .]     482     544 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                      HHHHHHHHHHHHT...-..H.HHHH CS
  Peptidase_M24_C  37 kvreklsplLeee...n..eeleWL 56 
                      +vre+++++ +++   n   e++WL
       CDO71158.1 100 RVREEIQKKGTKAlvvNmlDEVAWL 124
                      4555555542222222133346666 PP

  == domain 2  score: 83.5 bits;  conditional E-value: 1.8e-27
                      EEEEEES------STT--GGGS-HHHHHHHHHHHHHHHHHHHHHHHHT-H.HHHHHHHT--- CS
  Peptidase_M24_C   2 fleFetlTlvPidrklIdvslLtpeEiawLnaYhakvreklsplLeeeneeleWLkraTrpl 63 
                      +l+Fe++T++P+ ++l+d +lL+++E+ wLnaYha+v+eklspl+e+++++l+WL+r+++pl
       CDO71158.1 483 YLRFEHVTMCPMGKNLVDAALLSEKERTWLNAYHAEVLEKLSPLVEKDERALRWLQRECAPL 544
                      8********************************************999877*********98 PP

>> Creatinase_N  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.6e-05      0.12      75     122 ..      14      62 ..       2      70 .. 0.81
   2 !   14.8   0.1   7.3e-06     0.033       2     100 ..      98     202 ..      97     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                   STHSSHHHHHHHHHHHHT-EEEE-TTSSBHHHHHHHHHHC..TTSEEEET CS
  Creatinase_N  75 ddpvealadllkellesekrvgveldaltvafyealkeal..pdaelvda 122
                   +d v++++d+l++ l +  rvgv+++ + ++ +e +++al  ++ +lv++
    CDO71158.1  14 PD-VPTWQDFLSKSLDKDIRVGVDPTLIAASDAETIQKALeqKGSTLVSL 62 
                   45.899*********999**********************4444477765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.3e-06
                   HHHHHHHHHHTT-SEEEEECCHHHHHHHSS........-SSSEEEEEEESSCEEEEEECTTHHHHHHHH..TTSEEEEESTHSSHHHHHHHHHHHHT CS
  Creatinase_N   2 lerlralmeekgldallvtspenlrYltGfa.....tetgsrglalvvtadgalllvdalryteaaees.atveevveyddpvealadllkellese 92 
                   l+r+r+++++kg  al+v   + + +l + +       +    +al v +d+a l+v+++   +  ++      ev +yd    +++++l  l+++ 
    CDO71158.1  98 LKRVREEIQKKGTKALVVNMLDEVAWLFNLRgsdidYNPVFFAYAL-VDQDRARLFVNESQLDRDVRDHlGAEVEVHPYD----SFFSYLIHLGAEL 189
                   89****************************9999966777777777.***********9999998888844444555555....4444444444333 PP

                   .....-EEEE-TT CS
  Creatinase_N  93 .....krvgveld 100
                         +v v ++
    CDO71158.1 190 naqkdAKVLVSDK 202
                   3334655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3970.00
//
Query:       CDO71159.1  [L=379]
Description: hypothetical protein BN946_scf184845.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-96  322.0  10.7    4.7e-96  321.4  10.7    1.2  1  Mg_trans_NIPA  Magnesium transporter NIPA
     0.0034   17.6   3.3     0.0034   17.6   3.3    3.9  4  EamA           EamA-like transporter family


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.4  10.7  5.2e-100   4.7e-96       2     278 ..      86     357 ..      85     359 .. 0.96

  Alignments for each domain:
  == domain 1  score: 321.4 bits;  conditional E-value: 5.2e-100
  Mg_trans_NIPA   2 dfliGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllL 97 
                    d++iG+ Lavsssl ig+sfil kk+   + ++      +  yay+k++lWwaG+ t++vGe+anfaay+faP +LvtPLGalsvi+ a+las+lL
     CDO71159.1  86 DKYIGLALAVSSSLAIGTSFILTKKASESAYASA-----SDNYAYFKNPLWWAGMSTLIVGEVANFAAYTFAPPILVTPLGALSVIIGAILASFLL 176
                    789*********************9876544433.....568****************************************************** PP

  Mg_trans_NIPA  98 kekLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvlilyveprkGktnilvyitlcsllgsltvisvkalg 193
                    +e+L  lg +Gc l++lGs ++v+haP  +++++++e+ d+++ p+fl+y+  v+v +lv+i+ v pr+G+tn  vyi +csl+gs++v+++k+ g
     CDO71159.1 177 DEELGHLGRIGCSLCLLGSLIIVLHAPPDKDVQTVDEILDYATRPGFLLYCFFVLVFTLVMIYGVVPRYGRTNPAVYISICSLVGSVSVMAIKGFG 272
                    ************************************************************************************************ PP

  Mg_trans_NIPA 194 iaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsG 278
                    +a+kltlaG++q++ + ++++ + +v+c+ +q+ny+nkald+f+t +v P+yyv f t +ivas+ilf+ f+  + ++ ++ l+G
     CDO71159.1 273 VAVKLTLAGHNQFTLPSTYVFGVTVVVCILVQMNYFNKALDTFSTNVVNPMYYVGFSTATIVASVILFQGFNTDDPANSISLLAG 357
                    ***********************************************************************99888877777776 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.1      0.42   3.8e+03      49      69 ..      34      53 ..       9      69 .. 0.47
   2 !    3.8   1.0    0.0065        58       2      28 ..      89     115 ..      88     141 .. 0.79
   3 !   17.6   3.3   3.8e-07    0.0034      75     136 ..     138     199 ..     128     200 .. 0.90
   4 ?   -0.7   9.3      0.17   1.5e+03       5     121 ..     227     347 ..     223     359 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.42
        EamA 49 allkegklaklslkdwlllll 69
                +l+++ ++  l +++w++l l
  CDO71159.1 34 HLHHALSF-YLLYTGWASLSL 53
                33333333.333444444444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0065
        EamA   2 lgillallaalfwaiyfvlskillrkv 28 
                 +g+ la+ ++l  +++f+l+k+++++ 
  CDO71159.1  89 IGLALAVSSSLAIGTSFILTKKASESA 115
                 6899******************98876 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 3.8e-07
        EamA  75 tvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  +++ ++ f a +  ++  ++++ +l++++ +il+++ll e l+ +  +g+ l+llG l+i+
  CDO71159.1 138 LIVGEVANFAAYTFAPPILVTPLGALSVIIGAILASFLLDEELGHLGRIGCSLCLLGSLIIV 199
                 4556689999*************************************************997 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.17
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagilllii........allkegklaklslkdwllllllgllgtvlafllffyalkktsasnas 95 
                 ++++l+  +  iy+v+ +++  +++p  +  + +l++++ +++i        + l ++  ++++l +   + ++ ++++++ +  f++al + s  ++ 
  CDO71159.1 227 CFFVLVFTLVMIYGVVPRYG--RTNPAVYISICSLVGSVSVMAIkgfgvavkLTLAGH--NQFTLPSTYVFGVTVVVCILVQMNYFNKALDTFSTNVVN 321
                 55666666667777777774..444444444555566666666655555443444444..5599999999999999*********************** PP

        EamA  96 litslePvftlilsvlllgekltlkq 121
                 ++ ++    ++i ++++l + ++  +
  CDO71159.1 322 PMYYVGFSTATIVASVILFQGFNTDD 347
                 *****999999999999987777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2466.90
//
Query:       CDO71160.1  [L=249]
Description: hypothetical protein BN946_scf184845.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-26   90.6   0.1    1.1e-25   90.0   0.1    1.2  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.1     6e-30   1.1e-25      16     138 ..      74     198 ..      61     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 6e-30
                   SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHHHHHHHHHHHHSTSS CS
  Ribosomal_S7  16 pkynselveklinklmkdGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqalAlrwiieaarkrk 112
                   p ++++l++ +++++mk+Gk+++A     + l +i+  tk+ p+ ++++A+e ++P ++ ++++  +++y  p+++++++r ++A+ wi+eaa+kr 
    CDO71160.1  74 PPAEDPLLHLFTSCIMKHGKRHTAAAQTAKMLLHIHAFTKAPPMPIFRQAIETAAPLLRCRQFKRAAKQYVFPMPLTERQRARMAIAWILEAAKKRG 170
                   668999******************************************************************************************* PP

                   SS-HHHHHHHHHHHHHTT-..SHHHHHH CS
  Ribosomal_S7 113 eksmaekLaeElidAaege..gaavkkr 138
                   +k+  e+ a+E+id+++ +   +++kk+
    CDO71160.1 171 GKQSPERFAREIIDVIKADpkNEVIKKK 198
                   ****************999878899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1861.77
//
Query:       CDO71161.1  [L=483]
Description: hypothetical protein BN946_scf184845.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-83  279.3   0.0    5.3e-83  279.1   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.1   0.0     3e-87   5.3e-83      27     460 ..      13     444 ..       8     446 .. 0.93

  Alignments for each domain:
  == domain 1  score: 279.1 bits;  conditional E-value: 3e-87
                 -HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSE.EEEEEC....TTEE CS
      Aldedh  27 taedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaekleg.evlpss....egkl 119
                 t e++d+  a+  ++f++ a+ p+e R++ L ++a+++++++  + +++ ++  kp  e++  ev+  +  + y+++  e+ +  +  +++    ++  
  CDO71161.1  13 TMEEIDQTYARLTKTFQSGATRPLEYRRRQLLQLARMIQDNHTAFEDALIADLNKPRVETTVsEVSHLVTAVLYAVANFEEWALpQPCETKeawrSSWG 111
                 6689999999999***************************************************************99999444254444235547888 PP

                 EEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHH CS
      Aldedh 120 alvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevg 218
                 a+ ++eP Gvv++I+PWN+Pl+l++  l+ a+aaG+  vlKP+e +p  + lla lf +  l++++  vv g   e+ +al  + + d++  tG ++vg
  CDO71161.1 112 ATLYKEPKGVVLIISPWNYPLVLTINPLIGAIAAGCPAVLKPSELVPTFTQLLADLFPR-YLDPDAYAVVKGGVPETTHAL--DLRWDHIFYTGNSRVG 207
                 9999*******************************************************.9***********999999999..569************* PP

                 HHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-.-BS-.TTSTT-SB---SSHH CS
      Aldedh 219 rkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl.kvgd.pldedtdvGPlisea 315
                 r +a+aa+k+l++vtlElGGk+p+++ +d+D+d a+++++ g + naGQ C+a+  +lv ++ +d+fve l +a  ++   gd pl+ ++ +  +++++
  CDO71161.1 208 RIVATAAGKHLTPVTLELGGKSPAVIADDCDFDIAARRVLYGKIQNAGQLCVAPDYALVLRDKVDAFVESLRKAHDEFwPEGDhPLTGSVPISNIVNPR 306
                 ***************************************************************************8887666637999*********** PP

                 HHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHH CS
      Aldedh 316 qlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervae 414
                 + +++ ++++++k    k++lGge       k+  ++Pt+l++v++d+ ++ eE F+P l+++ ++d ++a++i+N+ +  L  ++ft+++e   ++ e
  CDO71161.1 307 HHARLVDLLNRTKG---KVVLGGE-----IHKDKSISPTILTGVPEDDVLMDEENFAPFLPIVAVDDMDHAMRIVNSKHIPLVIYLFTNQEELKDKFLE 397
                 ****9999999887...99****4.....467889**************************************************************** PP

                 HS-SSEEEESSSST--TTT.SEB--CGGGEES-BSHHHHHHHTEEEE CS
      Aldedh 415 rleaGnvyiNdsttgaaea.lpfgGvkqSglGreggkegleeytevk 460
                 r + G++ +Nd++ + + + +pfgG ++Sg+G   gk  ++ +t+ +
  CDO71161.1 398 RTRSGQLVLNDTIMQLVVHeMPFGGQGESGYGMWFGKTTFDVFTHFR 444
                 ************888888889***********999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3217.40
//
Query:       CDO71162.1  [L=879]
Description: hypothetical protein BN946_scf184845.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-60  203.0   4.4    8.6e-60  202.3   4.4    1.2  1  DUF647    Vitamin B6 photo-protection and homoeostasis
    1.7e-51  175.4   0.0    2.4e-51  174.9   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> DUF647  Vitamin B6 photo-protection and homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   4.4   9.6e-64   8.6e-60      37     237 ..     447     667 ..     443     670 .. 0.96

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 9.6e-64
      DUF647  37 lqafassiasvlatqavLegvGVGdasasptaAlllwvlkDglgrlatilfasrlgtaldsecKryrlvadvlndlamllellspal............ 123
                 +++  +s+a+++a++avL+g+GVG+asas+t+A++l+v++D+++rl+t++    lgt+l +e+K+yrl+advlnd+a++ ++lsp+l            
  CDO71162.1 447 AADYLHSLAGLFASRAVLQGHGVGNASASATNAIFLTVIQDVFSRLTTVIAGYYLGTSLYPEAKTYRLLADVLNDAAIICDTLSPHLahlslslrypfl 545
                 5667899******************************************************************************************** PP

      DUF647 124 .....pslfllvlslasvlkslcgvaagatkaslsahfArkg....nlgevnAKdssqetvvsllGlllgivvvslisskaaltwlllilllalhllan 213
                      +sl++l+l+l+  l++lcg +ag +ka+l+ hfA+ g    ++g+++AKd+s+etv++llG+++g+vv+++++s    t+++l+ ll+ hl+an
  CDO71162.1 546 tsapdSSLRVLALCLSGSLRALCGAVAGGSKAALTVHFATAGerpgDVGDLSAKDGSKETVLALLGMVCGSVVLHYVHSARM-TYIVLFGLLFCHLTAN 643
                 ***755*********************************9554455**********************************99.9*************** PP

      DUF647 214 ykavravklrtLNrqRanivlsef 237
                 + avr+v lr++NrqRa++ +++f
  CDO71162.1 644 VVAVRVVALRIFNRQRASLAWTSF 667
                 *******************99988 PP

>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   0.0   2.7e-55   2.4e-51      43     449 ..       2     414 ..       1     428 [. 0.80

  Alignments for each domain:
  == domain 1  score: 174.9 bits;  conditional E-value: 2.7e-55
                 TEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSH.STT.THHHHHHHHHHHHHHH.HHCCCCHCS CS
        p450  43 skpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsf.gkl.sleelveeeaedlvek.lrkkagess 137
                 ++p+ +l++  a++ +l +kg+  s+rp+  +   + + ++g g ++    ++ ++ Rr++++ +     +  ++ e+ e+e+++l+ + +r+ +++  
  CDO71162.1   2 GHPTLILGSFRAAQDLLDAKGAIYSDRPNAIMAGELVGWDRGLGYAHGPDnPRFREFRRLFHKFIGPRaCQDpRILEMQEKETHRLMLRfIRDPKNF-- 98 
                 6788888888888888888888888886666666655555666666666678888888888887777774444777777777766554404444444.. PP

                 EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH...HHHCHHHHCCCCCHHHTCCSCHHHHH......HHHHHHHHHHHHHHHHHHH CS
        p450 138 elditellskaaldvigsilFgarfdlledeklselvkaveelss...llskssvqllllfpllkylptkllrk......lkeavkklkdlldklieer 227
                     +++  + +   i ++++g +  +++d++   lv++ve  ++     s +   l++ fp+++y+p++l  +      ++e++++l++++d  ++  
  CDO71162.1  99 ----YRHPRESTGALILRLAYGYQ--TVQDRDHDPLVEVVEVAMKgfaKASEPGAFLVDNFPVMRYIPEWLMPRggfkavAREMRRQLDQMYDLPFNFV 191
                 ....46667777778888888886..788888889999999888852233344455788999******9986542222227899999************ PP

                 HHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT..T-HHHHCCT-HHH CS
        p450 228 retldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr..eptyddlqklpyl 324
                 +e+++   + r +f++  l++k   + ++  ++e ++a +  l+ a + T ss ++ +++ +   P++q++ + E+d v+g++    pt++d+++lpy+
  CDO71162.1 192 KEQMELG-NARPSFTQEYLSEK---QAPTAADEELIKAAAASLYSAEYQTPSS-ITACILAMCLWPDIQARAQRELDAVIGNSWtrLPTFSDRTRLPYV 285
                 *******.78***********7...4444678888999999999999999887.66677778889***************8854569************ PP

                 HHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS....CTESSCTT--TTEEGGGS-TTHHHHH CS
        p450 325 davikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg....nskrksfaflPFGaGpRnCiGerlAr 419
                  av+ E+LR  p+vpl+l +++t+d   rg +ipkGt+v  n++++++dp+vfp+P eF+peRFld kg     ++ ++ + ++FG+G+R+C+G+ +A+
  CDO71162.1 286 YAVVLEVLRWNPAVPLGLAHRLTQDDAYRGWHIPKGTVVWANIWSMLQDPAVFPEPTEFHPERFLDSKGhlrrLERHEDPSVIAFGFGRRICPGMYFAI 384
                 ************************************************************************9555788999***************** PP

                 HHHHHHHHHHHHHEEEEESTSTSGGEEESS CS
        p450 420 melklflatlLqnFevelqpetdpppilek 449
                   +++ +atlL + ++   +++d +  l+k
  CDO71162.1 385 NSVFIGIATLLYTLNIAKERDDDRKEVLPK 414
                 ***********9999997666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5849.06
//
Query:       CDO71163.1  [L=262]
Description: hypothetical protein BN946_scf184845.g33, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-07   30.1   0.0    6.9e-07   29.3   0.0    1.4  1  BBE             Berberine and berberine like
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.26   10.8   0.0    1.4  1  HTH_OrfB_IS605  Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.7e-11   6.9e-07       1      36 [.     200     237 ..     200     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.7e-11
                 --TTS--GGG-HHHHHHHHGGGHHHHHHHHHHH...-TT CS
         BBE   1 aYvNyrdldlgkewgerYFggNferLvkvKtky...DPd 36 
                 aY+N  d+ ++ +++++++g+N+++L +vK k+   DPd
  CDO71163.1 200 AYFNEGDIYEP-DHQQSFWGNNYAKLLEVKHKIlvsDPD 237
                 8**********.********************9999998 PP

>> HTH_OrfB_IS605  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.26      17      44 ..     156     183 ..     150     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
  HTH_OrfB_IS605  17 eeklartfGcvRfVYNkaLaerkeayee 44 
                     + +++ +   +Rf YN  L+er+  y+ 
      CDO71163.1 156 RDAIWHMGLSSRFPYNSTLSERTATYQT 183
                     66777777789***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1844.51
//
Query:       CDO71164.1  [L=408]
Description: hypothetical protein BN946_scf184845.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-11   41.6   0.3      2e-10   40.5   0.3    1.5  1  FAD_binding_4  FAD binding domain
    4.8e-09   36.2   0.2    9.3e-09   35.3   0.2    1.4  1  BBE            Berberine and berberine like


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.3   2.3e-14     2e-10      61     138 ..      14      90 ..       6      91 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.3e-14
                    TTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  61 eeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    e++  +tv+aGv  +dl++++++ ++++     +++ g +GG++++++++  s + Gl +d +l+++vv++dG  +++
     CDO71164.1  14 ETYDAITVGAGVLTQDLYKFADEVNRTVV-GGYHQTIGFAGGFVLGGGHSILSPVFGLAVDRILQVKVVTPDGVYRTV 90 
                    56789****************88888886.89999999***********************************77765 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.2     1e-12   9.3e-09       1      37 [.     349     384 ..     349     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1e-12
                 --TTS--GGG-HHHHHHHHGGGHHHHHHHHHHH-TT- CS
         BBE   1 aYvNyrdldlgkewgerYFggNferLvkvKtkyDPdN 37 
                 aY+N  d+ ++ +++++++g+N++ L ++K+kyDPd 
  CDO71164.1 349 AYFNEGDVYEP-DHEQSFWGDNYPTLLEIKRKYDPDG 384
                 8**********.***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3005.84
//
Query:       CDO71165.1  [L=413]
Description: hypothetical protein BN946_scf184845.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0047   16.7   0.0       0.17   11.6   0.0    2.2  2  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.11   12.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   1.9e-05      0.17      18      78 ..     120     187 ..     114     201 .. 0.75
   2 ?    2.7   0.0      0.01        93     118     147 ..     283     312 ..     262     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
  Methyltransf_16  18 grkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavael........lpeakviltDl 78 
                      g k W+ ++ lv  le  + +++ a++l++++vlELG Gt +  l + ++          ++++ l D+
       CDO71165.1 120 GLKTWECSLDLVDCLES-IYEGQVARHLKGKRVLELGCGTAIPSLYLLQAvffsepspNANIHIHLQDY 187
                      67889999999999999.556677899*************99888776665565553334444555555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.01
  Methyltransf_16 118 keevDlilaaDcvYledslelLvkvLkell 147
                        ++ + l +  +Y  d l+ Lv+++ + +
       CDO71165.1 283 GGPYQILLTSETIYRTDGLPSLVELMWRAT 312
                      567899*****************9987765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05      0.11      18      59 ..     143     181 ..     133     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengfsvtgvDlspeavei 59 
                      ++  +g+rvL++GcGt i + +l +    v + ++sp+a+  
       CDO71165.1 143 ARHLKGKRVLELGCGTAIPSLYLLQ---AVFFSEPSPNANIH 181
                      556789***********99998844...47788888875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2863.99
//
Query:       CDO71166.1  [L=244]
Description: hypothetical protein BN946_scf184845.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-23   81.0   0.0    6.9e-21   74.7   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0     0.001        18      37      98 ..      23      84 ..      13      86 .. 0.71
   2 !   74.7   0.0   3.9e-25   6.9e-21     178     293 ..     102     217 ..      95     218 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.001
                  --TT-.TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red 37 tAevY.gkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskeniresleeslkrLg 98
                  +A +Y  + + e+ l +a  +++ + +++++atK   +l+  +  +++ +e + ++l +sl rL+
    CDO71166.1 23 IAAYYgSPLPDEQRL-KA--EEKREEKDIFLATKFgfALGVPNRVVCGDTEYVPKALVKSLDRLE 84
                  677772223333334.33..3458999********777777777888889999999999999986 PP

  == domain 2  score: 74.7 bits;  conditional E-value: 3.9e-25
                   HHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHH CS
  Aldo_ket_red 178 lckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqled 272
                   +++++gv+++aysp+g+Glltgk +s++d ++ + r+   r+  e+++k l+ ++++ ++a +++ ++aq++l+++l+q   +i+ipg++  + l++
    CDO71166.1 102 TARELGVKIVAYSPVGRGLLTGKITSPDDLPENDGRRTPPRFskENFPKVLQVVDIITKFASKYDATPAQVSLAWLLAQGDDIIPIPGTT--KNLTE 196
                   67889**************************99999988888**********************************************87..58*** PP

                   HHGGGG----HHHHHHHHHHH CS
  Aldo_ket_red 273 nldalelklseeevaeldell 293
                   nl+al+++l +++++e+++++
    CDO71166.1 197 NLGALNVRLAPQDLEEIRKIA 217
                   ******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1604.28
//
Query:       CDO71167.1  [L=927]
Description: hypothetical protein BN946_scf184845.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-70  236.2   0.0    2.8e-70  235.5   0.0    1.4  1  Thioredox_DsbH  Protein of unknown function, DUF255
    4.7e-08   33.1   0.0      1e-07   32.0   0.0    1.6  1  Thioredoxin_7   Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   0.0   3.1e-74   2.8e-70       2     162 ..      12     166 ..      11     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 235.5 bits;  conditional E-value: 3.1e-74
  Thioredox_DsbH   2 nrlaeekspYllqhaknpvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiymeavqa 96 
                     nrla++kspYllqha+npvdW++wg ea++kak+e+kpi+ls+GysachWChv+++esfede +a+++ne++v++kvDreerPd+d++ym+++qa
      CDO71167.1  12 NRLAKAKSPYLLQHAENPVDWFEWGPEAFDKAKRENKPIFLSVGYSACHWCHVLAHESFEDEVTAKIMNEHYVNIKVDREERPDVDRLYMTFLQA 106
                     9********************************************************************************************** PP

  Thioredox_DsbH  97 ltgsggWPlnvfltpdlkpffggtYfpkeeregrpgflevlekiaelweeereeleeeaeelleal 162
                     +tg ggWP++v+ltpdl+pff+gtYfp+       +f+++l k+ae+we+++e++ ++ ++++ea+
      CDO71167.1 107 TTGGGGWPMSVWLTPDLHPFFAGTYFPP------GQFRQILLKLAEVWETDSERCINSGKQVIEAI 166
                     ***************************9......47*************************99886 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.1e-11     1e-07       1      65 [.      31      95 ..      31     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.1e-11
                   ---SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-G CS
  Thioredoxin_7  1 ewlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterda 65
                   +w  + +ea++ka++++kp+++ +g s c+ C++l+ +  +de+ +++++e++v  +vd +er +
     CDO71167.1 31 DWFEWGPEAFDKAKRENKPIFLSVGYSACHWCHVLAHESFEDEVTAKIMNEHYVNIKVDREERPD 95
                   6888999*****************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 5974.92
//
Query:       CDO71168.1  [L=304]
Description: hypothetical protein BN946_scf184845.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-12   47.8   0.1      7e-12   45.8   0.1    1.8  1  APH              Phosphotransferase enzyme family
     0.0011   18.7   0.1        0.3   10.6   0.0    2.2  2  RIO1             RIO1 family
     0.0022   17.3   0.1      0.039   13.2   0.0    2.0  2  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
      0.018   14.3   0.0        3.2    6.9   0.0    2.1  2  Fructosamin_kin  Fructosamine kinase
      0.023   14.3   0.0      0.036   13.7   0.0    1.2  1  Choline_kinase   Choline/ethanolamine kinase
       0.19   11.0   0.0       0.28   10.4   0.0    1.2  1  EcKinase         Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   2.3e-15     7e-12      39     229 ..      71     284 ..      60     292 .. 0.66

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.3e-15
                 HHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS..................HHHHHHHHHHHHHHHHHHCCHHCH.......... CS
         APH  39 revallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr..................klsaaqlpellealgeflaalhqv.......... 108
                 +e++ + +++ +   pvP+v+       + gl   ++e ++g +l+                   ++ ++ + e l++++e l++l +           
  CDO71168.1  71 NEAKAMIFVRTHTSiPVPQVYM---VFKHDGLTHIVMEHIDGVDLRAaqrlgangewslnggmvtEEGMRSIVEHLYRIIEELRELGRRfplkeprfgs 166
                 566677777766556*****99...67777777777777777777774447777777777776665666666666666666666444444444444444 PP

                 ..............-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 109 .............dpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                              dp+++  + ++++ +++l  le+    + +s ++d    l + ++++ ++       + l HgDl  +N+lv+  d+r+++++D+e
  CDO71168.1 167 wpegpfrnshfsvDPPTSSYSTYADFHRYFLGRLEAN--YSNDSIYED----LQK-FMEESPRDIT----PALSHGDLADRNVLVK--DNRIVAIVDWE 252
                 4444444443333666666666666666666666666..333333333....444.6667777777....9***************..9********** PP

                 T-EEEECCHHHHCCHHHCSCHCCCHCHHHHHHHHC CS
         APH 195 daglgpplyDlavllrswtseldpeflaallraye 229
                 + g+ p  +++++l+   ts+ +p++l+a     +
  CDO71168.1 253 TFGWYPDFWEVMSLW---TSRMGPSLLDAVQTVFG 284
                 *****8777777777...46789999988776665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0026       7.9      57      98 ..      71     115 ..      60     147 .. 0.72
   2 !   10.6   0.0    0.0001       0.3     124     149 ..     225     251 ..     195     253 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHTT.--S--EEEEETT....EEEEE--EETTEEGGBH CS
        RIO1  57 kEfrnLkrleeag.vpvPkpielkrh....vlvmefigedgvaapkl 98 
                 +E +++  ++++  +pvP+++ + +h     +vme i+  gv +   
  CDO71168.1  71 NEAKAMIFVRTHTsIPVPQVYMVFKHdgltHIVMEHID--GVDLRAA 115
                 66677666665544**********99666669*****9..4444333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0001
                 TSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 124 eaglvHaDLSeyNvlvded.kvviIDv 149
                 +  l H+DL + Nvlv+++  v i+D+
  CDO71168.1 225 TPALSHGDLADRNVLVKDNrIVAIVDW 251
                 45689**************55668888 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.039   1.2e+02      49      90 ..      70     114 ..      61     149 .. 0.83
   2 !   13.2   0.0   1.3e-05     0.039     125     147 ..     229     251 ..     225     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
                  HHHHHHHHTS.-BTTB..--EEEEEESSSSEEEEEE--TTEBHHH CS
  Pkinase_Tyr  49 leeakimkkl.khpni..vkllgvctkeepllivteyvkgGdLlk 90 
                  ++eak m  +  h  i   +++ v  +++ + iv+e ++g dL+ 
   CDO71168.1  70 VNEAKAMIFVrTHTSIpvPQVYMVFKHDGLTHIVMEHIDGVDLRA 114
                  6799999988778776315677777799999********999975 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.3e-05
                  EEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr 125 vHrdlaarNvLlsenkvvkisDf 147
                   H dla rNvL+++n++v i D 
   CDO71168.1 229 SHGDLADRNVLVKDNRIVAIVDW 251
                  5*******************995 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0033       9.8      58      97 ..      71     110 ..      60     123 .. 0.82
   2 ?    6.9   0.0    0.0011       3.2     171     212 ..     207     250 ..     197     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0033
  Fructosamin_kin  58 aEaesLealaetqtirvPkvlavGelkdasfLvleyLelk 97 
                      +Ea+ +  +++ ++i vP+v++v +++  +++v+e+++  
       CDO71168.1  71 NEAKAMIFVRTHTSIPVPQVYMVFKHDGLTHIVMEHIDGV 110
                      6888888899999***********************9966 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0011
  Fructosamin_kin 171 eelvervaellsk..hqpkpsllHGdLWsgNaaltkdgepvifd 212
                      +++ e +++++++  ++++p+l HGdL   N+ ++++    i+d
       CDO71168.1 207 DSIYEDLQKFMEEspRDITPALSHGDLADRNVLVKDNRIVAIVD 250
                      567777888775422689*************9998887666666 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.2e-05     0.036     130     172 ..     209     252 ..     199     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                     HHHTHHHHHHCHGG-EE..EE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 130 elekleklleelespvv..fcHnDlqegNillnkeekklvlIDFE 172
                       e+l+k++ee+  +++  ++H Dl  +N+l+ k+++ + ++D+E
      CDO71168.1 209 IYEDLQKFMEESPRDITpaLSHGDLADRNVLV-KDNRIVAIVDWE 252
                     567889999888888642279***********.8888899****9 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.4e-05      0.28     195     247 ..     205     253 ..     183     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.4e-05
    EcKinase 195 lkenlferllelve.ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQl 247
                   ++++e+l++++e ++++   +l HGDl  +N+++k ++      v +vD+ +
  CDO71168.1 205 SNDSIYEDLQKFMEeSPRDITPALSHGDLADRNVLVKDNRI-----VAIVDWET 253
                 567899********555555679*************98744.....67777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2225.08
//
Query:       CDO71169.1  [L=173]
Description: hypothetical protein BN946_scf184845.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1244.14
//
Query:       CDO71170.1  [L=188]
Description: hypothetical protein BN946_scf184845.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1455.28
//
Query:       CDO71171.1  [L=744]
Description: hypothetical protein BN946_scf184845.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-18   66.6   0.0    9.4e-18   63.9   0.0    2.4  2  HLH       Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.8     0.047   8.4e+02       7      15 ..     420     428 ..     415     428 .. 0.80
   2 !   63.9   0.0   5.2e-22   9.4e-18       1      53 []     427     562 ..     427     562 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.047
                 HHHHHHHHH CS
         HLH   7 erErrRRdr 15 
                 ++E+rRR+r
  CDO71171.1 420 ANEKRRRRR 428
                 789***986 PP

  == domain 2  score: 63.9 bits;  conditional E-value: 5.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST....................................................................... CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP....................................................................... 28 
                 rr++hn++ErrRRd+iN++++eL +l+P                                                                       
  CDO71171.1 427 RRESHNAVERRRRDNINERISELATLIPeclldpngtppasdtalpsvahsatdiatmtmpaslsasgddllfggvrintekkegsdsaepedgnppat 525
                 89************************************************************************************************* PP

                 ...........CSTTSS...-STHHHHHHHHHHHHHHHH CS
         HLH  29 ...........slppsk...KlsKaeiLekAveYIkhLq 53 
                            +++      K +K +iL+k veYI++Lq
  CDO71171.1 526 pttangtsssnADN--NnavKANKGMILRKSVEYIRYLQ 562
                 ****9998865333..2458******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4704.85
//
Query:       CDO71172.1  [L=132]
Description: hypothetical protein BN946_scf184845.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 937.27
//
Query:       CDO71173.1  [L=247]
Description: hypothetical protein BN946_scf184845.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-05   24.2   0.0    3.2e-05   23.9   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
     0.0089   16.2   0.0       0.02   15.1   0.0    1.5  1  DUF3070         Protein of unknown function (DUF3070)
  ------ inclusion threshold ------
      0.041   13.7   0.0      0.083   12.7   0.0    1.4  1  LBR_tudor       Lamin-B receptor of TUDOR domain
       0.17   11.4   0.0       0.21   11.1   0.0    1.4  1  NmrA            NmrA-like family


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0     7e-09   3.2e-05       1      84 [.       7     106 ..       7     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 7e-09
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTH....HHCHHHHCTTTCEEEE--TT.-CCHHHHHHTT-SEEEES---TCC..HHHH........HH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnp....eklaeleaeeglevvegdvt.dvedlaealkgadaVvsalggggk..deeg........ak 79 
                     GAtG  G  + + +l++    +vt+l+R+p    +kl+e ++e+  ++v++d+   + dla+ l+ +d  ++alg+++    ee+        + 
      CDO71173.1   7 GATGAAGLSIYRAALRDPaIQKVTLLTRRPipswAKLPENAEEKTETMVHMDFKlYPPDLARRLAEHDGLIWALGRSAAgmSEEAytemtytyTM 101
                     9*****************8779*******766667889888889999******7369*****************887776633334444555543 PP

                     HHHHH CS
  NAD_binding_10  80 nivda 84 
                     +++++
      CDO71173.1 102 AAARV 106
                     33333 PP

>> DUF3070  Protein of unknown function (DUF3070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.4e-06      0.02       8      29 ..     185     208 ..     183     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
     DUF3070   8 lLLvaEdtheaP..SrLyPSLHsp 29 
                 lL  a dt +aP  SrL PSL+sp
  CDO71173.1 185 LLMRALDTALAPiySRLVPSLYSP 208
                 566788****************98 PP

>> LBR_tudor  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05     0.083      10      24 ..     218     232 ..     214     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
   LBR_tudor  10 evVmgRWPGSsLyye 24 
                 evV gRWPG  L+ +
  CDO71173.1 218 EVVKGRWPGQELFMN 232
                 89**********976 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.8e-05      0.21       1      51 [.       3      58 ..       3     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.8e-05
                EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S...-SHHHHHHHHSTTEEEES- CS
        NmrA  1 IlviGaTGrqGksvvrallk..aghkvralvRdt...kselakslkeaGvelvkgd 51
                I+++GaTG+ G s+ ra+l+  a  kv  l+R +     +l ++ +e+  ++v+ d
  CDO71173.1  3 IIITGATGAAGLSIYRAALRdpAIQKVTLLTRRPipsWAKLPENAEEKTETMVHMD 58
                89******************888899******997763444444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1848.34
//
Query:       CDO71174.1  [L=1377]
Description: hypothetical protein BN946_scf184845.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-73  247.9   1.7    3.3e-73  246.9   0.0    2.4  4  Sin3a_C         C-terminal domain of Sin3a protein
    1.7e-39  133.8   0.7    9.5e-39  131.4   0.2    2.5  3  Sin3_corepress  Sin3 family co-repressor
    2.9e-32  110.5   1.1    2.3e-18   66.0   0.0    4.0  4  PAH             Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> Sin3a_C  C-terminal domain of Sin3a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.3   7.5e+03      65      82 ..      45      62 ..      25      70 .. 0.75
   2 ?   -4.8   2.3       2.8   1.7e+04      21      60 ..     253     292 ..     251     310 .. 0.46
   3 ?   -4.3   0.0       1.9   1.1e+04      50      79 ..     372     400 ..     365     409 .. 0.62
   4 !  246.9   0.0   5.4e-77   3.3e-73       1     286 []     865    1132 ..     865    1132 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.3
     Sin3a_C 65 eeeeeyYsqllelvekll 82
                 ++ ++Y+++l+ ++++ 
  CDO71174.1 45 ADRPDVYNKFLDIMKDFK 62
                677899******999875 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 2.8
     Sin3a_C  21 Llkikqaeeqvaeevkerkankvavelgldkkesealalr 60 
                 L k++++++  +++++++  ++ +++  + +k++ + a r
  CDO71174.1 253 LAKLEELRKASESKSRKAGDSHASSSTAVPQKRKRKAADR 292
                 5555555554444444444433333333333333333333 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 1.9
     Sin3a_C  50 dkkesealalrleseeeeeeyYsqllelve 79 
                 +++  +++++r+ ++  + e Y+++l+lv+
  CDO71174.1 372 HSNLDKHFFERV-KRALDRETYNEFLKLVN 400
                 344445555555.45557788999998884 PP

  == domain 4  score: 246.9 bits;  conditional E-value: 5.4e-77
     Sin3a_C    1 FfaNttfYvflrlfqiLyeRLlkikqaeeqv.aeevkerkankvavelgldkkesealalrleseeeeeeyYsqllelveklldGeidqsqfEdslR 96  
                  Ff+Nt fYv+lrl+++Ly+RL+ +k++++++ a+ + + ++n+  v+ ++++++  +l+ r+   ++++++Y+ +le++ekl+d+e++q++fE+ +R
  CDO71174.1  865 FFTNTAFYVMLRLLELLYSRLQLFKNITRELaANGSDPLEPNPSLVS-KTIQDDLAKLGDRI---NHASNFYDLMLECCEKLFDNELEQHAFEEIMR 957 
                  9****************************994555555666665555.66669999999999...9******************************* PP

     Sin3a_C   97 emfgik.aYklfTldKliqalvkqlqtivsDekcqellelfekerskeettsqdeisyrkkaekll.kdenlfriewkseskkltiqlldkddetld 191 
                   mfg k aYklfT+dK+i al+kq+q i+sD+k+qel++l+++er+  + t+qd i+ r+++e++l +denlfri+w +e k++tiql++kdd t+d
  CDO71174.1  958 YMFGLKhAYKLFTVDKVIGALIKQVQVILSDSKSQELYDLLRREREITSPTTQDLINCRRNTERVLgPDENLFRIDWLPEPKTITIQLIGKDDGTYD 1054
                  ***9655****************************************************************************************** PP

     Sin3a_C  192 ddeveaeerwkeYvesYvlveptegv.ereklkkvfLkRnlkaerkeeekkeeeeqekaekeeeaekeleveekleiriclnsyklvyvpgtedvl 286 
                  d+e   + rw++Y+es+v+ + t gv ++++++++fL R+               +++       + ++  + +l+i++c+++y+l++v+ +edv+
  CDO71174.1 1055 DSE-VLNGRWQSYIESFVSHHYTAGVpSSSTIRRPFLLRTK------------IPAPSG-----GMPDIIARGGLQIKVCVRTYRLFFVSRSEDVM 1132
                  ***.689*******************66678999******9............111222.....35667778**********************98 PP

>> Sin3_corepress  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.2   1.6e-42   9.5e-39       6      98 .]     470     561 ..     466     561 .. 0.97
   2 ?   -3.3   0.0       1.7   9.9e+03      51      80 ..     677     706 ..     656     715 .. 0.72
   3 ?   -1.9   0.0      0.61   3.7e+03      26      38 ..    1055    1067 ..    1048    1076 .. 0.81

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 1.6e-42
  Sin3_corepress   6 sYrlLpksyqqpkcsgrdelekevLNdewvsvptwasedsgsfkasrknqyeealfrcEderyelDmvieanrstiklleelakkiesmseee 98 
                     sYr+Lp ++++ +csgrd+++++vLNdew+s pt+ased+g f+a++kn yeeal+r+E+er+e+D++iea+++ti++le++++ki+++s+ee
      CDO71174.1 470 SYRKLPAHEVNVQCSGRDDMCNSVLNDEWISQPTFASEDAG-FVAHKKNIYEEALHRSEEERHEYDFHIEAIHRTIQVLEPINNKIAQLSPEE 561
                     9***************************************8.************************************************997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
  Sin3_corepress  51 srknqyeealfrcEderyelDmvieanrst 80 
                      ++ ++ + lf     r++l++v+e ++  
      CDO71174.1 677 VKRASLIDPLFARTKPRHQLEFVLEDVSVL 706
                     467777778888888999999999977655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.61
  Sin3_corepress   26 ekevLNdewvsvp 38  
                      ++evLN +w s+ 
      CDO71174.1 1055 DSEVLNGRWQSYI 1067
                      579******9975 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   3.9e-22   2.3e-18       1      45 []      49      93 ..      49      93 .. 0.98
   2 !   25.1   0.0   2.4e-09   1.4e-05       1      45 []     176     240 ..     176     240 .. 0.72
   3 !   15.7   0.0   2.1e-06     0.012       1      33 [.     390     422 ..     390     430 .. 0.91
   4 ?   -3.6   0.0       2.2   1.3e+04      21      34 ..     976     989 ..     963     990 .. 0.80

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 3.9e-22
         PAH  1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45
                +vY++FLdi++d++++ id+++V+e+Vs+LFh+hp L+++Fn+FL
  CDO71174.1 49 DVYNKFLDIMKDFKSQFIDTPGVIERVSNLFHGHPALIQGFNTFL 93
                79**************99**************************8 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 2.4e-09
         PAH   1 evYkeFLdiLhdyq....................keqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 e Y +FL iL + +                    ++++ + e   ++ +L++  pdL+reF qFL
  CDO71174.1 176 EMYRKFLSILSESSgtmqdhkdirgmeswsvaclSAKYPQGETLRKIGNLLQEEPDLMREFVQFL 240
                 56************55544444444444444333333445558888******************8 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 2.1e-06
         PAH   1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhd 33 
                 e+Y+eFL++ + ++++ i++++++ + ++++ d
  CDO71174.1 390 ETYNEFLKLVNLFTQDIINTTRLVREARSFLGD 422
                 89***************************9977 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.2
         PAH  21 keVyeqVskLFhdh 34 
                   +++qV+ +++d+
  CDO71174.1 976 GALIKQVQVILSDS 989
                 56899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1129  (0.0629706); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 9425.46
//
Query:       CDO71175.1  [L=452]
Description: hypothetical protein BN946_scf184845.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-54  182.4   0.0    6.9e-54  181.9   0.0    1.1  1  IF4E      Eukaryotic initiation factor 4E
  ------ inclusion threshold ------
      0.039   14.1   0.0       0.08   13.1   0.0    1.4  1  DUF1102   Protein of unknown function (DUF1102)


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9   0.0   7.7e-58   6.9e-54       1     155 [.     193     368 ..     193     372 .. 0.92

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 7.7e-58
                 EEEEEEEEEEE-TTT.....--SS-...................SGGG-EEEEEEEEHHHHHHHHHHS--GGGB-SSEEEEEEETT--SSTTSHHHHS- CS
        IF4E   1 pLkskWtlwfdsksk.....sksen...................yeeslkkvatfstveeFwslynnlkkpsklkvksdyhlFkkgikPmWEdpankkG 75 
                 pL++ Wtl++d+ksk         +                   ye++l+ +++f+tve+F++++n+lk+pskl+++s+yhlFk+gikPmWEd+an++G
  CDO71175.1 193 PLEHPWTLYHDTKSKvpytpA---TagsdnppnsahfappdtdeYEAGLTVIGEFDTVESFCRYFNWLKPPSKLERNSNYHLFKSGIKPMWEDEANANG 288
                 79********88888665331...14556788899999999999******************************************************* PP

                 EEEEEEE--.---HHHHHHHHHHHHHTT-SS--.-SEEEEEEEE-SSEEEEEEEES-TT-HHHHHHHHHHHHHT------- CS
        IF4E  76 Gkwvirlkk.kekldrlWeelllaligeqleeeedeicGvvvsvRkkedrisiWtrdasdeekvekigeklkevlelpeek 155
                 Gkwv+++k+  + ldr+W +l +al+ge l+e  deicG+vvs R+k dri++W+r+++d ek++ i +k+ ++l+++e++
  CDO71175.1 289 GKWVLTMKNnPQLLDRCWAWLAMALVGEDLDEG-DEICGAVVSLRSKVDRIQLWVRSKDDVEKINGIARKMVKLLDVSEAD 368
                 *******996777*****************999.******************************************99876 PP

>> DUF1102  Protein of unknown function (DUF1102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.9e-06      0.08      57     137 ..     314     393 ..     306     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.9e-06
     DUF1102  57 vsndlwenees.pivveiksenssvklyagevddgqtasiadaaesieftveegeevsvGlildateeslGvkkaeltikay 137
                 v  dl e  e    vv+++s+ + ++l+  + d  +  +i + a+++   ++ +e+  +Gl+++ ++++  v ++ l+i+a+
  CDO71175.1 314 VGEDLDEGDEIcGAVVSLRSKVDRIQLWVRSKD--DVEKINGIARKMVKLLDVSEADGIGLEFQYNNDERPVPNKFLSIQAV 393
                 66677776665567899**************77..667788999999999*******************9999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3421.72
//
Query:       CDO71176.1  [L=453]
Description: Glycoside Hydrolase Family 18 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-64  216.7   1.7    7.8e-64  216.4   1.7    1.1  1  Glyco_hydro_18  Glycosyl hydrolases family 18
  ------ inclusion threshold ------
       0.16   10.2   2.3       0.25    9.6   2.3    1.2  1  DUF390          Protein of unknown function (DUF390)
          6    4.8   6.2        7.6    4.5   6.2    1.0  1  AF-4            AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4   1.7   1.3e-67   7.8e-64       6     312 .]      70     433 ..      66     433 .. 0.84

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 1.3e-67
                     EEGGGGGSSGC....SHTTTESEEEEEEEEEEETTTEEEESS.TTHHHHHHHHHHHHHHTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHH CS
                     xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   6 ysswesygnny....lpsaklthiiyaFakidgengkvvvsd.wedlgnfeqlkklkkkknpgvkvllsiGGwtdssgfslaastdasrkkfads 95 
                     y  w+ ++  +    l ++k+t + yaFa ++++ ++v++ d  e+l  + ++ + +  ++++vk +l +GGwt+s+ fs+a++tda+r++f+++
      CDO71176.1  70 YAGWHGED--FppenLSWSKYTQVTYAFAVTTPDVNTVSLADsDEAL--LPRFVNAA--HQNNVKAMLTVGGWTGSQYFSSAVATDANRTAFVKT 158
                     56687664..3334566****************999***99988884..55555555..5559******************************** PP

                     HHHHHHHCT-SEEEEEES-TTTS........TCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHH.HHHH...CHHHHHHHHTSEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx...xxxxxxxxxxxxxxx RF
  Glyco_hydro_18  96 vvsllrkygfDGiDidweypggn........pedkenytallkelrealdkakategkkllLsaavpasasd.lskg...ydlpkiakylDyvnv 178
                     v  l+ ky++DG+D+dweyp+++        ++d +n+  +l++lr+      +++gk+l Lsaav   +     +g   +d+ ++ak+lDyv +
      CDO71176.1 159 VLGLVSKYNLDGLDFDWEYPNKQgigcnlisADDSQNFLSFLQALRA------DPAGKNLTLSAAVGITPFAgP-DGtpmTDVSDFAKVLDYVAI 246
                     ********************999********999*************......3669********987777742.234569************** PP

                     ETTTSSSTTSSBE--SS-SSB....T...CSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS.......................... CS
                     xxxxxxxxxxxxxxxxxxxxx....x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  Glyco_hydro_18 179 mtYDfhgswdnvtghhaplyd....a...slnvdeavkeylkagvpakklvlGvpfygrawalvsgadn.......................... 240
                     m YD  gsw++ +g++apl+d    a   + ++ +avk++ +ag pa++lvlGv++yg +++  + a +                          
      CDO71176.1 247 MNYDVWGSWSSSVGPNAPLNDtcasAadqQGSAVSAVKAWTAAGFPANQLVLGVASYGHSFSVPNSA-Alsgntlqaypafdkgsqplgdkwdtd 340
                     *********************9766156799999***************************877663.334445555555555555556655555 PP

                     ............TSTTTEEEHHHHHHHH.......TEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     ............xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 241 ............tkeegvlsykelkell.......kkakakrkydskakapyvydge..efvsyDdpksikakadyvkakglgGvmiWsldqD 312
                                    +g++++  l ++         +++ ++++d+ +++pyvy+++  ++vsyDd+ks++ak +++ + gl G+++W++ +D
      CDO71176.1 341 apagvdqcgnpaGGPSGIFDFFGLIDGKfltangtVADGIDYRFDECSQTPYVYNPStqVMVSYDDAKSFAAKGKFINDAGLLGFAMWEAAGD 433
                     55555555555555555555555555559999999899999************************************************9988 PP

>> DUF390  Protein of unknown function (DUF390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.3   4.2e-05      0.25     287     363 ..     281     357 ..     267     361 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.2e-05
      DUF390 287 rarqaeaqasseavhdktagaslgpdpsgdeaattseaardkaagaslgpdpsgdaqdetasgdipelsasiggpsr 363
                  a +a + a   a +     as g + s +++a+ s+ + +       g +p gd +d  a+ ++ + +  +ggps 
  CDO71176.1 281 SAVKAWTAAGFPANQLVLGVASYGHSFSVPNSAALSGNTLQAYPAFDKGSQPLGDKWDTDAPAGVDQCGNPAGGPSG 357
                 4555555555555566667799999***************999999*****************************96 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.2    0.0013       7.6     461     494 ..      29      61 ..      16     107 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0013
        AF-4 461 svesahsssaeSeSsSeSeSSSeSDSesEssssd 494
                 s + a s  + S+  S+S SS  S S s sss  
  CDO71176.1  29 SAALAASATGVSGAASGSSSS-SSSSGSNSSSVA 61 
                 334444444445554444444.233344444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3300.96
//
Query:       CDO71177.1  [L=176]
Description: hypothetical protein BN946_scf184845.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-15   57.7   5.3    1.5e-15   57.3   5.3    1.2  1  Med22     Surfeit locus protein 5 subunit 22 of Mediator comp


Domain annotation for each model (and alignments):
>> Med22  Surfeit locus protein 5 subunit 22 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   5.3   8.2e-20   1.5e-15       1     103 [.      46     154 ..      46     156 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 8.2e-20
       Med22   1 erldddveslldnfreliklakvndekqkeks......taaqeslemevraaqlvraiedLlkLtrelKelwiLndfpelneeikdqeeeldeeneels 93 
                 +++d ++e+l+d +++l++la+ +d+ ++++         aqe+++ ++ra++++ra+++L++ ++++K l++L+d +++ ++++++ + +++e++e +
  CDO71177.1  46 KKVDVEIETLVDGMTDLVSLASLADTRTVNQIedkdkfRIAQEAFQAQCRAESMIRAAHSLMSTIHSMKLLLLLSDETQIAKRRDAELRVVQAEKSEAQ 144
                 699********************88888887788888555*********************************************************** PP

       Med22  94 qllnnlreel 103
                 + + +l +el
  CDO71177.1 145 TNVAALLDEL 154
                 ***9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1398.34
//
Query:       CDO71178.1  [L=1149]
Description: hypothetical protein BN946_scf184845.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-42  145.0   0.0    3.7e-42  144.6   0.0    1.2  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    3.8e-10   39.9   0.4    0.00032   20.4   0.0    3.3  3  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   4.1e-46   3.7e-42       2     257 .]      31    1146 ..      30    1146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 4.1e-46
                  EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC-....TT.TTS.TTH...............HHHHHHHHHHHHH....SH-CCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx...............xxxxxxxxxxxxx....xxxxxx RF
         UCH    2 GlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkkel...nesnplgkkge...............lakalkdlfkell....kskska 75  
                  Gl+N GntC+mns+lQ L+++++lr  ++ ++   + ++ +   +    + +p+ ++g+               l + +++++++ +    +++++ 
  CDO71178.1   31 GLINHGNTCFMNSTLQGLIATQPLRdLVFFQPVAPALQPADG--SpilAKRSPQLTNGHglggsdelewtegmpLGDIFTTIMRKAWgiqdAKRRET 125 
                  9************************54555544444444444..344755555556665689999*******9999999****9999**99889*** PP

                  E--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCC....................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................................... RF
         UCH   76 vsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnr....................................................... 117 
                  +sPk++++t+++ + +   ++qqDa+Efl+++Ld +  +  +                                                       
  CDO71178.1  126 MSPKEILTTIGRKYDQYLDFRQQDAHEFLRHMLDAMRMEELDiikrrqppppksrrkrrditsnaalpspalplpdsasqtsqpsslaaphsehdas 222 
                  ****************99*****************98776667999*************************************************** PP

                  ........HCCCHHHHHHCCCTTSHHHHHH-EEEEE............................................................. CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
         UCH  118 ........evaeekwkkhlkrndslitdlfegqlks............................................................. 145 
                          ++++++ ++++ + +s+++ lf+gql s                                                             
  CDO71178.1  223 rrepqsrpQSQQSQGREQEDKLESFVDMLFGGQLASilvcekckkvsvtyedfndlslsikpedyvknrkrdrfkriarklrirppapheqlsqqdq 319 
                  *****97544444449999999*************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CDO71178.1  320 qgqalgqeidhaaprlrgrgmfsaiqrassvptspvrrssevsareeppthedprrksfdhaggdgdeardvvkemagaglppsslasaideqdeed 416 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CDO71178.1  417 apeeithaeaaeaaeqpkidtdgataeaageekakekekkerddawgkiarrisvsmklsgarekdkdkdreqrdsrpssrqgergrrtdikdafrv 513 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CDO71178.1  514 mrsgepraprpgsvvpgasvhetgseagdvsdaprhrvsspdpasplissplaqssrpsssrrsstnpfshhhhhnprrkderghsfappkmsdeem 610 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CDO71178.1  611 aylrqvladvhpvtgnplsilqnaftggsgsssgssaltthalwakvghlpgieeclrmftaveildgenmvgchrcwkianglykphnrdgdngge 707 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CDO71178.1  708 gdsesssennsesstsasdssgtsdasgvkppsvssrthpvvpdlqdmddsaqqsspdlssgrispastsfvstqtgnhsstaddttsissapttds 804 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CDO71178.1  805 vlasgtygglpipkistsevdipnsasagqaldqdrqvpsdsalsrtwapnasgvspsddslltprgrrpgrskgerkdsvtysgessddelddsds 901 
                  ************************************************************************************************* PP

                  ......................................................................EEEEEEB-SEEEEEEESEEETEE.... CS
                  ......................................................................xxxxxxxxxxxxxxxxxxxxxxx.... RF
         UCH  146 ......................................................................klklkrlPeiLiihlkRfsynss.... 168 
                                                                                        +  +++ P+iL+ihlkRf+   +    
  CDO71178.1  902 easgrsdgsaspsvspsatpnssvekltntsrsprtspqphdrassgtaqagaaskvprskqvimrkmykRYLISTPPPILVIHLKRFQQMAKvhti 998 
                  ******************************************************************************************6666678 PP

                  .....EEE--SEEB--SEEE-G.............GGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEEEEEECTTTTE................. CS
                  .....xxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
         UCH  169 .....ksKlntkvefpeeldls.............sylaeekkkkteekkkYeLiavvvHsGslssGHYvayiknekngk................. 230 
                        +Kl++ v fpe+ldl+             +   ++k k+++ek+ Y+L+av+vH+G++ +GHYvay++ ++n +                 
  CDO71178.1  999 slsggFKKLDDFVAFPEYLDLApflapkredfvhgK-DGRNKGKHKREKCMYRLYAVIVHIGNMLGGHYVAYTALPQNPSqptqqsspppptpsaes 1094
                  888999****************66666666665532.22334444455666********************999555555677888999******** PP

                  .........................EEEEETTEEEEE-HHCCCTT.CEEEEEE CS
                  .........................xxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH  231 .........................WykydDetvkevkeeeevls.sayiLfY 257 
                                           W +++D+ v   + e evl+ +ayi +Y
  CDO71178.1 1095 eksapsltsqdsrsslasdqkqprkWAYISDTVVRLATLE-EVLKaKAYICMY 1146
                  **************************************88.78888*****99 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00037       3.3       2      30 ..      31      59 ..      30      63 .. 0.92
   2 !    8.7   0.1   0.00013       1.1     124     175 ..     226     292 ..     111     320 .. 0.70
   3 !   20.4   0.0   3.6e-08   0.00032     212     305 ..     975    1079 ..     945    1128 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00037
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  2 GLEnhivnsYlNslLQvlyfipplrnlal 30
                GL nh +++++Ns LQ l  ++plr l+ 
  CDO71178.1 31 GLINHGNTCFMNSTLQGLIATQPLRDLVF 59
                999**********************8765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00013
                 x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.x.xxxxxxxx RF
       UCH_1 124 s...............seeesaieqllgtkaettirclkCgseksrksstlvldlky.P.k.psnekkea 175
                 +                + es ++ l+g ++ + + c kC++ ++  +++  l+l+  P       k+ +
  CDO71178.1 226 PqsrpqsqqsqgreqeDKLESFVDMLFGGQLASILVCEKCKKVSVTYEDFNDLSLSIkPeDyV---KNRK 292
                 0445555555565555777888888****************************9987453121...2222 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 3.6e-08
                  xxxxxxxxxxxxxxxxxx.xxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  212 vknlPpvLalnakleeee.elelwkt...............knwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghL 292 
                  +   Pp+L++++k++++  + +                   +++l+l   l   ++++     k+ r+k k+++e  +Y L +v+vhig+    gh+
  CDO71178.1  975 ISTPPPILVIHLKRFQQMaKVHT--IslsggfkklddfvafPEYLDLAPFL--APKREDFVHGKDGRNKGKHKREKCMYRLYAVIVHIGNML-GGHY 1066
                  44779999999998866412222..13355555565433333333333333..33333333334444556889999*************888.9*** PP

                  xxxxxxxxxxxxx RF
       UCH_1  293 vslvkvaekeler 305 
                  v++   +++ ++ 
  CDO71178.1 1067 VAYTALPQNPSQP 1079
                  ***9986664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.48
# Mc/sec: 7166.47
//
Query:       CDO71179.1  [L=160]
Description: hypothetical protein BN946_scf184845.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.4    6.6   5.5        2.7    6.5   5.5    1.1  1  Macoilin  Macoilin family
        7.3    5.9  10.8        9.3    5.5  10.8    1.0  1  CDC27     DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.5    0.0003       2.7     285     360 ..      59     134 ..      12     149 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0003
    Macoilin 285 ekeymenkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsss 360
                 +  + +  + ++ +  + +++s+ + + ++ ++++ ss+ s++ ++  +a+ +sa++++ ss+   ++s+s++ ss
  CDO71179.1  59 QGAFAHVATATDSSAATATDSSAATATDSGAATATDSSAASATDSSAATATDSSAATATDSSAATATASDSIALSS 134
                 2222222222222222333333344444444444555555555555555555555566666666666666665554 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  10.8     0.001       9.3      83     195 ..      25     128 ..      22     140 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.001
       CDC27  83 svqkallkDsnvLydvdydilkenkkndskdslirgaqagpivnkevkraeelgrpplaapaseakektangkkpkaakekaaketssakseskkksae 181
                 ++qk+ + D+  L +   ++ ++   n+  +  ++ga a + +  + + a++  ++++a+++     +++++        +aa++t+s+ + +++ sa+
  CDO71179.1  25 DIQKQNALDAQKLNAKFASLTASSSCNEGDQACVQGAFAHVATATDSSAATAT-DSSAATATDSGAATATDS--------SAASATDSSAATATDSSAA 114
                 68999999999999988888888666666666666666666666666666653.344433333333333333........4455555555555555555 PP

       CDC27 182 kskdaskettkeka 195
                  ++d+s +t +++ 
  CDO71179.1 115 TATDSSAATATASD 128
                 55555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1409  (0.0785878); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1114.40
//
Query:       CDO71180.1  [L=98]
Description: hypothetical protein BN946_scf184845.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-30  104.1   0.0    4.6e-30  103.9   0.0    1.0  1  F1F0-ATPsyn_F  Mitochondrial F1-F0 ATP synthase subunit F of 
  ------ inclusion threshold ------
      0.064   13.6   0.0      0.085   13.2   0.0    1.1  1  WRW            Mitochondrial F1F0-ATP synthase, subunit f


Domain annotation for each model (and alignments):
>> F1F0-ATPsyn_F  Mitochondrial F1-F0 ATP synthase subunit F of fungi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   5.1e-34   4.6e-30       2      92 .]       6      91 ..       5      91 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 5.1e-34
  F1F0-ATPsyn_F  2 vrralstlipPkiaspkalgaaknaarlervvsfYkkLPkGpapkakakgllgrykakyfdgknasgkPllhlilgllllgYsieYyfHLr 92
                   +rr+l  l+pPkia+p+ l++  ++  l+ +v+fY+kLPkG+ap++    + g++ka+yf+gknas++Pll +ilg++ lgY+i+Y++HL+
     CDO71180.1  6 IRRQLGGLVPPKIATPSLLSSG-TGGGLRLLVNFYSKLPKGAAPTT----ASGGIKARYFNGKNASAAPLLFTILGIFGLGYTIDYQMHLK 91
                   89****************9999.78899****************96....8899************************************8 PP

>> WRW  Mitochondrial F1F0-ATP synthase, subunit f
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.4e-06     0.085      64     101 ..      56      94 ..      49      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.4e-06
         WRW  64 qhkyvqpkragiapffqvlvavmllfYlinykkl.khhr 101
                 + +y+++k+a+ ap++  +++++ l Y+i+y+ + khh+
  CDO71180.1  56 KARYFNGKNASAAPLLFTILGIFGLGYTIDYQMHlKHHK 94 
                 679****************************97526666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 744.60
//
Query:       CDO71181.1  [L=499]
Description: hypothetical protein BN946_scf184845.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-170  566.7   0.0   2.3e-170  566.5   0.0    1.0  1  SHMT             Serine hydroxymethyltransferase
    0.00065   19.1   0.0     0.0033   16.8   0.0    2.0  2  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.024   13.8   0.0      0.056   12.6   0.0    1.7  1  Aminotran_1_2    Aminotransferase class I and II
      0.045   13.0   0.0      0.073   12.4   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.5   0.0  5.2e-174  2.3e-170       1     398 [.      36     425 ..      36     426 .. 0.99

  Alignments for each domain:
  == domain 1  score: 566.5 bits;  conditional E-value: 5.2e-174
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 l+e dpev +ii+ke+ rq +++eliasen+ts+a +ea Gs+ltnky+eG+P +ryyGG+e+vde+e l+q+ra+++f+ld a+wgvnvqp+sGs an
  CDO71181.1  36 LAEIDPEVQNIIDKETWRQFSGLELIASENLTSRATMEANGSILTNKYSEGLPNARYYGGNEYVDELEVLCQKRALQAFHLDAAQWGVNVQPYSGSTAN 134
                 5789*********************************************************************************************** PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 +a  tal++p+dr++gl l+dGGhlthG+ + +kk++ass++f+s++y++d+et+lidy+ l++ ak +kP+li++G+say+r +dy+ lreiade ga
  CDO71181.1 135 FAALTALIQPQDRLMGLGLPDGGHLTHGYYTAKKKMTASSIYFQSLPYGLDPETQLIDYKGLRQLAKIYKPRLIICGASAYPRDWDYKTLREIADEHGA 233
                 *************************************************************************************************** PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yl++d+ah +Glvaag  ++Pf+y+dvvtttthktlrGpr+gli++r       k+g +  ++lek++n avfP+ qGGP+n +ia++a+al +a++p 
  CDO71181.1 234 YLMADIAHTSGLVAAGELADPFQYCDVVTTTTHKTLRGPRAGLIFFR-------KSGDK-AQDLEKRVNDAVFPACQGGPHNNTIAGIATALLQACQPT 324
                 ***********************************************.......66766.79************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTSSTTTT-SEEEEESHHHHHTT--HHHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekva 396
                 +k+y+kqv++na +l ++l+ +gykl + Gtdnhlvl dlr+ gl+G++ ek+++ v it+nkn+v gd sa v++G+rlGt+altsr+++eed++ va
  CDO71181.1 325 WKAYAKQVIANAATLGQELVARGYKLQTSGTDNHLVLWDLRPLGLTGSKLEKLCDLVGITINKNAVSGDASAQVPGGIRLGTAALTSRDMREEDMKVVA 423
                 **************************************************************************************************9 PP

                 HH CS
        SHMT 397 kf 398
                 +f
  CDO71181.1 424 DF 425
                 98 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.12   5.4e+02     150     175 ..      99     125 ..      91     159 .. 0.55
   2 !   16.8   0.0   7.4e-07    0.0033     151     242 ..     222     365 ..     208     474 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
                      HHHHHHHHHHCT-E.EEEEETTHHHHH CS
  Beta_elim_lyase 150 lrevaaiakkygip.lhlDgARfanaa 175
                      ++e+  +++k+ ++ +hlD+A +  ++
       CDO71181.1  99 VDELEVLCQKRALQaFHLDAAQWGVNV 125
                      445555555555432555555554333 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 7.4e-07
                      HHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH............................... CS
  Beta_elim_lyase 151 revaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel............................. 215
                      + +++ia+++g  l+ D A     + + + ++++ f+y+D+vt    K l  +  g+++fr+++                              
       CDO71181.1 222 KTLREIADEHGAYLMADIAHTSGLV-A-AGELADPFQYCDVVTTTTHKTLRGPRAGLIFFRKSGDkaqdlekrvndavfpacqggphnntiagi 313
                      7899***************987765.3.4468899****************************9899999999999999999999999999999 PP

                      ..............HHHHHHHHHHHHT---SSTHHHHH.............. CS
  Beta_elim_lyase 216 ............edylaerveqrkylggglrqagvlaa.............l 242
                                  + y ++ ++ + +lg++l   g + +             +
       CDO71181.1 314 atallqacqptwKAYAKQVIANAATLGQELVARGYKLQtsgtdnhlvlwdlR 365
                      9999999999998888888888888998888888887733333333333330 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.056     164     357 ..     218     415 ..      93     417 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                    B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHHHHTS. CS
  Aminotran_1_2 164 vatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna......avvsqlrklsrpfls. 252
                    +++ ++l+++   a++++++l+ D a+  +            ++++    + v +  +   l G R G i+  +      ++ + +++++ p +  
     CDO71181.1 218 DWDYKTLREI---ADEHGAYLMADIAHTSGLVA-------AGELADPFQYCDVVTTTTHKTLRGPRAGLIFFRKsgdkaqDLEKRVNDAVFPACQg 303
                    5555566666...*****************999.......677887777555666666667899999*****666966665555555555555555 PP

                    ...SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS.. CS
  Aminotran_1_2 253 ...ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv.. 340
                        +  + +++a l++ +      ++ ++++++++ +l +eL +    l+  + +++++l+ dl+++    +  +kL + vg+ + ++   +   
     CDO71181.1 304 gphNNTIAGIATALLQACQ---PTWKAYAKQVIANAATLGQELVARgyKLQTSGTDNHLVLW-DLRPLgLTGSKLEKLCDLVGITINKNAVSGDas 395
                    5423333333333333333...399******************9995556666666777777.888887444444666666666666654444455 PP

                    ...TTEEEEECTTS-HHHHH CS
  Aminotran_1_2 341 ...pgrlRitvAglteeele 357
                       pg +R+  A+lt+ +++
     CDO71181.1 396 aqvPGGIRLGTAALTSRDMR 415
                    66688888888888887776 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05     0.073      93     183 ..     185     277 ..     170     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
                      -TTTSSB-GGGCGG..G--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEE CS
  DegT_DnrJ_EryC1  93 dpdtynidpaaiea..aitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGav 183
                      dp+t  id + +++  +i + +  I  + +y +  d + l++ia++hg +++ D Ah  G   +g+ +  +  + v+     K+l    +G++
       CDO71181.1 185 DPETQLIDYKGLRQlaKIYKPRLIICGASAYPRDWDYKTLREIADEHGAYLMADIAHTSGLVAAGELADPFQYCDVVTTTTHKTLRGPRAGLI 277
                      66666677666664114666667777888888889999**********************999997766666666666666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3407.75
//
Query:       CDO71182.1  [L=668]
Description: hypothetical protein BN946_scf184845.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-51  176.2   0.1    5.3e-26   91.6   0.0    3.1  3  COesterase     Carboxylesterase family
    0.00084   19.3   0.0      0.085   12.7   0.0    2.3  2  Abhydrolase_3  alpha/beta hydrolase fold
     0.0012   17.9   0.0      0.002   17.3   0.0    1.2  1  DUF1749        Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   8.9e-30   5.3e-26      23     153 ..      34     181 ..      18     195 .. 0.82
   2 !   66.6   0.0   3.4e-22     2e-18     161     222 ..     213     276 ..     212     329 .. 0.83
   3 !   14.4   0.0   2.1e-06     0.013     374     445 ..     445     513 ..     348     524 .. 0.86

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 8.9e-30
                 S.EEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHH.........BES.---EEEEEEESSSSSTTSSEEEEEE CS
  COesterase  23 k.evdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleaw.........vsE.DCLyLnvytPkekkeakkklPVlVw 110
                 + +v++++Gi+YA+ P    RF++++  +++    d+++f+p Cpq + ks +ee  +  +         +sE  CL Ln+  P++++  + ++PV++w
  CDO71182.1  34 DaPVHQYRGIKYASIP---ARFRQSKIFTRYPPQTDCSRFGPICPQPKFKSVEEELFNLSEdcipnqafkQSEfECLNLNITCPADATPVS-QYPVMIW 128
                 259************9...9***************************98888777544444899******77779*********9975555.55***** PP

                 E--STTTS-BGCG..S-THHHHHHH.....TSEEEEE----HHHHH-B-....S CS
  COesterase 111 ihGggfqtgsase..ydgsaLaaeg.....nvivVtinYRlGvlGFlst....g 153
                 ihGgg   gs+s+   d+  L+++       v++V+inYRlG++GF +     +
  CDO71182.1 129 IHGGGNR-GSGSNwvTDAGPLVQKSmqisrPVVIVSINYRLGLFGFAASpalrD 181
                 *****99.55544488999999999899999***************98755543 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 3.4e-22
                 HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGT..TSBSEEEEES--T CS
  COesterase 161 vGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsr..glfkraIlqSGsa 222
                 +Gl Dq+ A++WV++ I++FGG+p+++tlfGes Ga  +  +l s  ++   lf+raI+qS+  
  CDO71182.1 213 LGLRDQRRAMEWVHRYIHAFGGNPNNITLFGESTGAGDILCHLHSAANEvaPLFQRAIIQSAIV 276
                 59**********************************9888888887766558*********854 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHHTHHHHHHHHHHHH..HTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSG CS
  COesterase 374 aeksrkallelltdvlfkapvlrtaklha..srgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllek 445
                 a+++ ++ll+l++d+ f+ p+  +a +++  + g  v+ Y+fd+++     p+   ++h+ +l y+f++  l++
  CDO71182.1 445 ADELPERLLDLINDTRFAWPTELIAASLRaeRGGHGVWRYVFDQEG-----PSRGLPHHTVDLMYLFDNVPLPA 513
                 56677899**************99998876555556**********.....999999**********9876655 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0057        34       1      39 [.     126     168 ..     126     170 .. 0.75
   2 !   12.7   0.0   1.4e-05     0.085      50     101 ..     216     267 ..     212     305 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0057
                    EEEE--STTTS--TTTT....HHHHHHHHHHHTSEEEEEE--- CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth....dalcrelakelgavvvsvdYrl 39 
                    ++++HGGG    ++++       + +++     +v+vs++Yrl
     CDO71182.1 126 MIWIHGGGNRGSGSNWVtdagPLVQKSMQISRPVVIVSINYRL 168
                    689*******999999965522344555556678999*****9 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.4e-05
                    HHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EE CS
  Abhydrolase_3  50 edalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkva 101
                     d  +a++w++   +++g +p++i+l+G+S G+   +  ++ a++e  p  +
     CDO71182.1 216 RDQRRAMEWVHRYIHAFGGNPNNITLFGESTGAGDILCHLHSAANEVAPLFQ 267
                    68899********99*****************87555555555555444444 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.3e-07     0.002      85     167 ..     220     298 ..     208     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.3e-07
     DUF1749  85 eeieklveYlkktksGeekkekvvlmGHstGsqdvlyYltssnerdrekvdgailqapvsDReailkvleerkklkelvalak 167
                   +e +  Y++   +G  + + + l+G stG+ d+l  l s+ ++ ++  + ai+q+++ D e+         ++++l+++ +
  CDO71182.1 220 RAMEWVHRYIHAF-GG--NPNNITLFGESTGAGDILCHLHSAANEVAPLFQRAIIQSAIVDLEVPNLHQVG-WQMSKLISALR 298
                 4455555666666.56..7889**********************99***************9986653333.45555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4425.50
//
Query:       CDO71183.1  [L=308]
Description: hypothetical protein BN946_scf184845.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-28  100.1   0.0    1.5e-28   99.5   0.0    1.3  1  SRP19     SRP19 protein


Domain annotation for each model (and alignments):
>> SRP19  SRP19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   8.6e-33   1.5e-28       1      92 [.      91     183 ..      91     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 8.6e-33
                 EEECCCCBTTS-CCCT.--S-CCCSBSS--HHHHHHHHHHCTSCEEEEEEECTTSSTTCCEEEEEC-..........SS-CHHHHHHHHHHHH CS
       SRP19   1 viYPvYldskktrkeG.RrvpkelavenPtaqeiaealkalglevvvepeksyPrdwanpGrVrvklkedgkevnekiknkkellkkiaellk 92 
                 +iYP+Y+d+k+   +G Rr+p+ ++v +P+ ++ia+a ++lgl +v e +ks+Prdw npGrVrv++k+dg++vn++ik+kk+ll++ia +++
  CDO71183.1  91 CIYPIYIDAKRPYGRGeRRIPRAKSVWWPLSKDIADATNRLGLGTVHEVQKSHPRDWENPGRVRVQWKKDGRLVNPAIKTKKQLLEMIALQIQ 183
                 8****************************************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2254.62
//
Query:       CDO71184.1  [L=337]
Description: hypothetical protein BN946_scf184845.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-73  246.5   0.0    3.5e-73  246.4   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.0     2e-77   3.5e-73       2     292 ..      16     308 ..      15     310 .. 0.97

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 2e-77
                   EEEE-SSS-ST...TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.--SSSTTSSSS-HHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk..eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.dlrdaeiksglskeniresleeslk 95 
                   +g+G++ +     +++s+ee +++l++++e+G++f+DtA+ Y    seel+G+++k+  +kr e+++atK     +ae   ++++e  +++le+slk
    CDO71184.1  16 IGYGAMGIAAFygKPMSDEERFKVLDAVYENGCTFWDTADGY--ADSEELIGKWFKR-TGKRSEIFLATKFgIVENAERTINGTPEYAVQALEASLK 109
                   88999988866889****************************..*************.*************66678888999*************** PP

                   HHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT...-HHHHTTHHHHHHHTT-EEEEB CS
  Aldo_ket_red  96 rLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll...releeegllelckkkgvpliay 189
                   rLgtdyvDl++lHr dp++p ie +++a+++ vk+Gk++++G+S++s   l++a  +++++i+a++vey+++    e+ + gll++++++gv ++ay
    CDO71184.1 110 RLGTDYVDLWYLHRADPTVP-IELTVRAMADQVKAGKVKYLGLSEVSESTLRRA--HAVHPISAIEVEYSPFtldIEDPKVGLLKAARELGVTVVAY 203
                   ********************.*******************************99..*****************9999999***************** PP

                   STTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HH CS
  Aldo_ket_red 190 splggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklsee 284
                    plg+Gl+tg+y+ +ed+e+++ r++  r   e+++  l+ ae l++++ +++ +  q+al+++l+q   +i+ipg+++i  l++nlda ++kls++
    CDO71184.1 204 APLGRGLITGRYKGPEDFEEGDFRRQVPRYskENFPNILKIAEGLQKIGDKYNATAGQIALAWILAQGEDIIPIPGTTKIPNLKENLDAAKIKLSQD 300
                   **************************9999******************************************************************* PP

                   HHHHHHHH CS
  Aldo_ket_red 285 evaeldel 292
                   +++e++++
    CDO71184.1 301 DIQEVRRI 308
                   ****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2390.09
//
Query:       CDO71185.1  [L=825]
Description: hypothetical protein BN946_scf184845.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-38  130.6   4.7    1.9e-37  128.9   0.3    2.6  2  DUF4449   Protein of unknown function (DUF4449)


Domain annotation for each model (and alignments):
>> DUF4449  Protein of unknown function (DUF4449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.6    0.0068   1.2e+02      49     128 ..     346     423 ..     343     448 .. 0.74
   2 !  128.9   0.3   1.1e-41   1.9e-37       1     154 [.     681     825 .]     681     825 .] 0.96

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0068
     DUF4449  49 lDaelyevkqeaerakeeaksdpena..pniysryldalkkkftkkkekaeekekakkadkkvniavtkedsifpdiklpgg 128
                  D+++y+ k+ + + ++++  +++ +   n+ ++y++  k+ ++++ke+ ++     + d++++ a+++  ++++   + ++
  CDO71185.1 346 RDQFIYRAKKVVVECQKHKDYQESIQwlLNFLEEYASHTKTVAQHGKESGQQL----TGDSSLQQATSELRTLLERFANGKS 423
                 68888888888776666655522222458999****************99993....4588888888887777776666555 PP

  == domain 2  score: 128.9 bits;  conditional E-value: 1.1e-41
     DUF4449   1 vdvdnLkiklkkSkHklLfklfKPlllkvirpaiqkalekqirdaleklDaelyevkqeaerakeeaksdpenapniysryldalkkkftkkkekaeek 99 
                 v+v +Lk+++++SkH++L+++++Pl+++++++++qka+ +++ ++le +D +l+ v++++++ake+++           ++++ l++ f++kke+a+++
  CDO71185.1 681 VKVGTLKFSIRDSKHDTLYNIIRPLATGLVKRQLQKAIADAVTTGLEYVDGQLVGVRDRMNEAKETDGM----------SRTQVLQEMFQSKKEEAQST 769
                 7999****************************************************************9..........89999999999999999998 PP

     DUF4449 100 .ekakkadkkvniavtkedsifpdiklpggistkateykelaakGekWeSpvFsig 154
                   ka+++ ++++i+ ++++ ++p+ ++p g++++++e +++a +G+ W+S++F+i+
  CDO71185.1 770 kSKAEEKGSHFKIVSRRDSALLPQQGHPAGWVNRTQEREDAALRGQDWRSDAFTIV 825
                 66677779**********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1145  (0.063863); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 5232.59
//
Query:       CDO71186.1  [L=415]
Description: hypothetical protein BN946_scf184845.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-58  197.2   0.0    5.1e-58  197.0   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.11   11.0   0.0       0.25    9.8   0.0    1.5  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
       0.15   10.8   0.0       0.23   10.2   0.0    1.2  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.0   0.0   8.5e-62   5.1e-58       3     363 .]      44     408 ..      42     408 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.0 bits;  conditional E-value: 8.5e-62
                    EEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   3 vinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                     i L +ne+  + +  p + ++++ e +    g +l++y+ ++ ++  +++la++ g        +e  v +g G++++i++li+++ ++ +++il
     CDO71186.1  44 GILLDANENALGHSIpPASSSTLEPELQ-PTLGLDLHRYPSPT-HDPIKKRLAELRG-----LPGPE-YVFLGVGSDEVIDLLIRVCVAPGKEKIL 131
                    6889999999998887778888888888.99999*********.*************.....45678.*******************8999999** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEET.........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEE CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyse.........edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlll 184
                    +  pty++y+ +++ +++ vv++pl+ +           f+l ++++++a++ +p     +k+i+++sp NPtGt+++l  ++ ll+  +  + ++
     CDO71186.1 132 ITPPTYGMYSVCAQVNDVGVVKVPLEISgdageggeqGRFSLKIDEIKKAVSADP----SIKLIFLCSPGNPTGTLIPLSSIRSLLEYED-FKGIV 222
                    **************************99*****9988889999999999999876....88************************88877.6**** PP

                    EEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 185 fvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqr 280
                    +vDeaY +f+ ++ +   ++++++e+ nl+++++lsK+fGla +R+G++++++a+v++l + ++p+++s++++a+++ als +    + ++e +++
     CDO71186.1 223 IVDEAYIDFADEKAS---AISLLKEYANLCVTQTLSKSFGLAAIRLGIAFAHPALVQTLMNTKAPYNISTPTAALALSALSSSAV--DLMKEKVAT 313
                    ************543...399*************************************************************995..59******* PP

                    HHHHHHHHHHHHHHS.....TEEEECCSCSSEEEEEETHH........CHHHHHHHHHHTCTEEEE.EGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 281 lqkrrkelrdeLael.....glkvlasqsgmflltdlsae........takelskkLleevgvyvt.pgtsftvpgrlRitvAglteeeleelvea 362
                    l+++r+ l  +L+el     g  + +++++++++ +l++         +a+ ++k L+e +gv+v+ +g + ++ g+lRit+  ++eee++ ++++
     CDO71186.1 314 LIQSREALIRSLRELqplglGSVIGGNDANFVMVPVLEKNgsgkpdnvRAQRIYKTLAESEGVVVRyRGGELGCAGCLRITI--GSEEENKTVLQK 407
                    ******************9988999999******************9999999999****8888864899************..*******99987 PP

                    H CS
  Aminotran_1_2 363 l 363
                    l
     CDO71186.1 408 L 408
                    6 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   4.2e-05      0.25      44     175 ..      76     227 ..      62     230 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 4.2e-05
                      -SBTTT--HHHHHHHHHHHHHHT-..SEEEEESSHHH.HHHHHHHTTS-TTEE.EEEESTSSHHHHHHHHHTHHHTTCEEEEEST......... CS
  Cys_Met_Meta_PP  44 yeYsRsgnptrsvleeriaaLegg..eaalavssGma.AiaaailallkaGde.ivvsddlYggtqrllkkvlkklgievkfvdt......... 124
                       +  R+  pt++ +++r+a+L g    + + +  G    i++ i+  +  G+e i+++   Yg  ++++ +v     ++v   +          
       CDO71186.1  76 LDLHRYPSPTHDPIKKRLAELRGLpgPEYVFLGVGSDeVIDLLIRVCVAPGKEkILITPPTYGM-YSVCAQVNDVGVVKVPL-EIsgdagegge 167
                      5667888999999999999998852244455555554145556666677787646666666653.55555544333333222.11123345577 PP

                      .....TSHHHHHHHCCT..TEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGT CS
  Cys_Met_Meta_PP 125 .....sdleelekaike..ntklvylEtptnpllkvvDiekiaklakkag..vlvvvDnt 175
                            +++e++ka++     kl++l +p+np+  ++ + +i +l   ++   +v+vD +
       CDO71186.1 168 qgrfsLKIDEIKKAVSAdpSIKLIFLCSPGNPTGTLIPLSSIRSLLEYEDfkGIVIVDEA 227
                      777767899999998643499****************99999999887765578888876 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   3.8e-05      0.23     124     201 ..     127     215 ..     120     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.8e-05
                     --EEEEEES--HHHHHHHHHHT-EEEEEEEETTEE............-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT- CS
  Aminotran_MocR 124 kvkllvtvpGydrhfllleelGielltvdlqddGp............dvdaveklvaedasvkGilavpkysnptGetiseevarrlaal 201
                     k k+l+t p y  + +  +   + ++ v+l+  G              +d ++k v+ d+s+k i+ +    nptG+ i    +r l   
      CDO71186.1 127 KEKILITPPTYGMYSVCAQVNDVGVVKVPLEISGDageggeqgrfslKIDEIKKAVSADPSIKLIF-LCSPGNPTGTLIPLSSIRSLLEY 215
                     56777777777777666666666666666653332111222222222589*************775.56679********9999999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2811.17
//
Query:       CDO71187.1  [L=718]
Description: hypothetical protein BN946_scf184845.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-10   39.0  13.4    1.7e-09   37.6  13.4    1.8  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
       0.16   12.4   0.2        1.5    9.4   0.0    2.7  3  TPR_17    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  13.4   1.9e-13   1.7e-09       1      38 []     674     712 ..     674     712 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.9e-13
                 -TTT--..B-SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   1 CavCgk.aealkkCagCksvfYCskeCqradwksHkteC 38 
                 C++Cg+ + +l+kC+gC +++YC+ +Cq+++w++H+++C
  CDO71187.1 674 CSWCGNpSAVLRKCGGCGKTRYCDGQCQKKHWPEHRNDC 712
                 9*****778888*************************** PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.68   6.1e+03       4      16 ..     169     181 ..     169     182 .. 0.82
   2 ?   -2.6   0.0       1.1   9.6e+03       1      14 [.     239     252 ..     239     253 .. 0.84
   3 ?    9.4   0.0   0.00017       1.5       3      18 ..     438     453 ..     436     455 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.68
      TPR_17   4 kaleldPnnaday 16 
                 k ++ +P++a+++
  CDO71187.1 169 KLMQAHPDDAKVL 181
                 567899****986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
      TPR_17   1 lylkaleldPnnad 14 
                 l+++a +++P + +
  CDO71187.1 239 LFTNATQHCPQDCK 252
                 6899******9965 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00017
      TPR_17   3 lkaleldPnnadaynn 18 
                 ++a+e++P+ a+ay+ 
  CDO71187.1 438 QRAIERNPDLAYAYYA 453
                 89************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 4783.00
//
Query:       CDO71188.1  [L=190]
Description: hypothetical protein BN946_scf184845.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1382.48
//
Query:       CDO71189.1  [L=371]
Description: hypothetical protein BN946_scf184845.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-44  149.5  24.2    1.3e-12   48.0   0.5    7.5  7  WD40         WD domain, G-beta repeat
    8.6e-14   51.6   1.3     0.0011   19.2   0.0    5.2  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    8.3e-05   21.7   2.0       0.32    9.9   0.0    4.3  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0046   16.9   2.2        2.6    8.1   0.2    2.8  3  PD40         WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.5e-07    0.0011       3      37 ..      14      49 ..      12      50 .. 0.89
   2 !   25.1   0.2   4.9e-09   2.2e-05       4      37 ..      68     102 ..      57     102 .. 0.91
   3 !   27.6   0.2   8.2e-10   3.7e-06       1      37 [.     121     158 ..     121     159 .. 0.94
   4 ?    4.8   0.0     0.013        60      23      37 ..     192     206 ..     177     206 .. 0.78
   5 !   48.0   0.5   2.9e-16   1.3e-12       3      37 ..     216     251 ..     214     252 .. 0.94
   6 !   19.2   1.0   3.6e-07    0.0016       1      37 [.     259     306 ..     259     307 .. 0.84
   7 !   17.1   0.3   1.7e-06    0.0077       6      38 .]     330     367 ..     326     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.5e-07
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                ++  l+GH +  +++a++p  + las+s D++vr++
  CDO71189.1 14 LIDQLEGHeDRAWHVAWNPARPILASCSADKNVRLY 49
                566799**7669**********************98 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 4.9e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++ tGH + v+++a+sp+g+ la++s D ++ iW
  CDO71189.1  68 TTIPTGHaKTVRAIAWSPSGKTLATASFDSNIGIW 102
                 44578**999****************99******9 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 8.2e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++c+  l+GH +   s+a+s++g++las+s+D+tv iW
  CDO71189.1 121 WECMSLLEGHeTECKSVAYSSSGSLLASCSRDKTVWIW 158
                 689999****888************************* PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.013
                 SEEEEEETTSEEEEE CS
        WD40  23 awlasGsdDgtvriW 37 
                 + las+s+D t++++
  CDO71189.1 192 QILASASYDDTIKLY 206
                 348999*******97 PP

  == domain 5  score: 48.0 bits;  conditional E-value: 2.9e-16
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 c +tltGH s v+ lafspdg++lasGsdD+t+riW
  CDO71189.1 216 CFQTLTGHeSTVWTLAFSPDGRYLASGSDDCTIRIW 251
                 999*****888************************* PP

  == domain 6  score: 19.2 bits;  conditional E-value: 3.6e-07
                 TEEEEEEESS.SSEEEEEEETTSSE..........EE.EEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw..........la.sGsdDgtvriW 37 
                 ++c+ +l+GH  sv+s+++ + +++          la +G+ Dg +++W
  CDO71189.1 259 WECVSVLEGHeRSVYSISWGRGKPLdggdagslgwLAsTGG-DGVIHVW 306
                 68********888****877777779999999999774778.******* PP

  == domain 7  score: 17.1 bits;  conditional E-value: 1.7e-06
                 EEESS..SSEEEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40   6 tltGH..ssvtslafspdgaw...lasGsdDgtvriWd 38 
                 ++ +H   +v+++ ++p +     +a+++dDg v++W+
  CDO71189.1 330 IFNAHdvHDVNCVVWCPRKGSedlFATAGDDGLVKVWK 367
                 6888964459***55555555997899999*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0025        11      37      67 ..      21      51 ..      11      59 .. 0.84
   2 !   17.2   0.0   1.1e-06    0.0047       3      68 ..      30     105 ..      29     126 .. 0.82
   3 !    4.8   0.0    0.0077        34      36      67 ..     129     160 ..     119     164 .. 0.87
   4 !   19.2   0.0   2.6e-07    0.0011      11      90 ..     195     278 ..     190     280 .. 0.71
   5 ?    0.8   0.0      0.14   6.3e+02       2      21 ..     343     365 ..     321     368 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0025
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrllda 67
                 ++ +  ++aW+p   +La   +d +vrl++ 
   CDO71189.1 21 HEDRAWHVAWNPARPILASCSADKNVRLYSY 51
                 55667789********************986 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.1e-06
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRlng...........qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  w+p + ++A  ++d++++++  +             ++ t+  +++ ++vr++aW+p+gk La a  d+++ +   e
   CDO71189.1  30 WNPARPILASCSADKNVRLYSYSAspqsednsikfTHLTTI-PTGHAKTVRAIAWSPSGKTLATASFDSNIGIWAQE 105
                  88999999999999999998888877777766555555555.78999**********************99987665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0077
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +++ e +s+a++ +g+lLa    d +v + +a
   CDO71189.1 129 GHETECKSVAYSSSGSLLASCSRDKTVWIWEA 160
                  5778999******************9999887 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 2.6e-07
  ANAPC4_WD40  11 AlatedgellvfRlngqrvwtl..eedkedsevrsLaWkpdgklLavaysdgevrlldaesg...kvvhslsvksekavtclgWg 90 
                  A a+ d+ + ++  + q+ w    + ++++s+v  La++pdg+ La + +d ++r+ +  ++   ++v+ l+ ++  +v +++Wg
   CDO71189.1 195 ASASYDDTIKLYIDDPQEDWFCfqTLTGHESTVWTLAFSPDGRYLASGSDDCTIRIWERVQEhkwECVSVLEGHER-SVYSISWG 278
                  55556666666666666656555556789999************************98766511145555555555.69999997 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.14
  ANAPC4_WD40   2 swcptm...DLiAlatedgellv 21 
                   wcp +   DL+A a +dg + v
   CDO71189.1 343 VWCPRKgseDLFATAGDDGLVKV 365
                  35554222266666666655544 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0014       6.4     186     214 ..      73     102 ..      45     111 .. 0.73
   2 ?    0.1   0.0     0.067     3e+02     186     215 ..     129     159 ..     107     167 .. 0.79
   3 !    9.9   0.0   7.1e-05      0.32     186     217 ..     223     254 ..     197     275 .. 0.81
   4 ?    0.8   0.1     0.041   1.8e+02     201     215 ..     353     367 ..     303     370 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0014
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkff 214
                  h+ ++   a+sp G +latas d  +  +
  CDO71189.1  73 GHAkTVRAIAWSPSGKTLATASFDSNIGIW 102
                 3442677779**************998766 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.067
    Ge1_WD40 186 eh.sliveaafspdGtalatasedGevkffq 215
                  h ++  + a+s+ G  la +s d +v  + 
  CDO71189.1 129 GHeTECKSVAYSSSGSLLASCSRDKTVWIWE 159
                 44257788899*************9998775 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 7.1e-05
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvy 217
                 ++s++ + afspdG  la  s d +++ +   
  CDO71189.1 223 HESTVWTLAFSPDGRYLASGSDDCTIRIWERV 254
                 34799999*******************99744 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.041
    Ge1_WD40 201 alatasedGevkffq 215
                   ata  dG+vk ++
  CDO71189.1 353 LFATAGDDGLVKVWK 367
                 346666666666665 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.2   0.00058       2.6      13      27 ..      80      94 ..      78     102 .. 0.80
   2 ?   -3.1   0.1       1.9   8.4e+03      21      30 ..     135     144 ..     135     151 .. 0.71
   3 !    7.5   0.0   0.00087       3.9      15      24 ..     231     240 ..     230     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00058
                EEEE-TTSSEEEEEE CS
        PD40 13 aPsfSPDGkrlaFsS 27
                a+++SP Gk+la +S
  CDO71189.1 80 AIAWSPSGKTLATAS 94
                78*********9555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
                 SEEEEEEECT CS
        PD40  21 krlaFsSdRg 30 
                 k+ a+sS+++
  CDO71189.1 135 KSVAYSSSGS 144
                 5678888754 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00087
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG++la
  CDO71189.1 231 AFSPDGRYLA 240
                 7*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2525.37
//
Query:       CDO71190.1  [L=127]
Description: hypothetical protein BN946_scf184845.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-05   22.5   0.4    0.00014   21.9   0.4    1.3  1  PAH             Paired amphipathic helix repeat
  ------ inclusion threshold ------
      0.072   13.2   0.0      0.087   12.9   0.0    1.2  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
      0.099   13.0   0.0       0.27   11.6   0.0    1.7  1  HEAT            HEAT repeat


Domain annotation for each model (and alignments):
>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   2.4e-08   0.00014       3      45 .]      51      93 ..      49      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.4e-08
         PAH  3 YkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45
                Y++F + L+ y + +    +V  q+  L ++ p Ll+e n FL
  CDO71190.1 51 YDHFFKALKLYEEGRVELVDVLLQLMILCASTPKLLQELNYFL 93
                ******************************************8 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.087      72     130 ..      35      89 ..       7      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
  MqsA_antitoxin  72 afiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalvkllklldrhPelleei 130
                     +f++ vr++l    +  ++ f    +a+  ye+G+v+    l++l+ l    P+ll+e+
      CDO71190.1  35 DFVQLVRRQLAGRPAAYDHFF----KALKLYEEGRVELVDVLLQLMILCASTPKLLQEL 89 
                     566667777666666555655....5999****************************97 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.4e-05      0.27      10      28 ..       6      25 ..       3      27 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
                T-SSHH.HHHHHHHHHHHHH CS
        HEAT 10 sDpspe.VReaAakaLgala 28
                sD+++e VR++Aa aL +++
  CDO71190.1  6 SDNNWEyVRASAAAALSEVY 25
                79****9*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 938.44
//
Query:       CDO71191.1  [L=269]
Description: hypothetical protein BN946_scf184845.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-11   42.5   0.1     0.0035   16.6   0.0    3.1  3  DUF4336     Domain of unknown function (DUF4336)
  ------ inclusion threshold ------
       0.05   13.3   0.0      0.084   12.6   0.0    1.3  1  MAF_flag10  Protein of unknown function DUF115


Domain annotation for each model (and alignments):
>> DUF4336  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.2e-06     0.019      20      89 ..      22      85 ..      15      89 .. 0.76
   2 !    8.3   0.0   0.00013       1.2     140     166 ..     163     189 ..     127     195 .. 0.87
   3 !   16.6   0.0     4e-07    0.0035     278     318 .]     226     266 ..     221     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-06
     DUF4336 20 iRmtvvkLekggLlvyaPvapTkellelvkeleaehgevkyivlptvalEHKvfvgpfarkfpkAevwva 89
                 R t vkL++g+ +v a  +  +   + +    ae+g+vk i+ + +   H +f+g+  +++p+A+v  +
  CDO71191.1 22 GRSTAVKLSNGDVWVLASTPLDEPTKSKL----AEIGPVKWIIGADA--VHHLFLGEYKKQYPDAKVIAV 85
                599************87654333333334....467******96654..5889*************9765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00013
     DUF4336 140 gkfaevaffhkasktllvtDavvsvpe 166
                  k ++vaffh +sk+++ +D ++++p+
  CDO71191.1 163 FKNKDVAFFHSKSKSMIEADLLFNLPA 189
                 45689****************999886 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 4e-07
     DUF4336 278 peevlawvdkvakwkferiipaHfdapieatpkefraafsf 318
                 +e++++ v++va w+feriip+H d   +  ++ + +a+++
  CDO71191.1 226 KEAMKRDVKTVAGWDFERIIPCHGDVIEKDAKAAWMEAYKW 266
                 667788899*****************999999999999987 PP

>> MAF_flag10  Protein of unknown function DUF115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.3e-06     0.084      45     148 ..      74     181 ..      69     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.3e-06
  MAF_flag10  45 kelrdkaviiaadtalkaLlkegIkPDivvslDpqeasyevfkeaekkg.....diplvfasgvnpellkkykgpkiflvtgstqalelleeekneilf 138
                 k+   +a +ia+d a ++  keg+k+D     Dp ++ y + ++++++       i     + +   +++ y++++  ++t+ + +++ + ++k++ +f
  CDO71191.1  74 KKQYPDAKVIAVDEAAQKKAKEGLKVDGAWGADPPHTRYGFESDVSTSVpafaeMIFTSSLNADTTLVIRPYSNTSPLVFTSAYSYFSGF-KNKDVAFF 171
                 6667899***************************99999976666665566553333333344555567778888876666666666666.33333556 PP

  MAF_flag10 139 gGgsvantal 148
                  ++s + +  
  CDO71191.1 172 HSKSKSMIEA 181
                 6666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1818.30
//
Query:       CDO71192.1  [L=317]
Description: hypothetical protein BN946_scf184845.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2144.76
//
Query:       CDO71193.1  [L=235]
Description: hypothetical protein BN946_scf184845.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1600.61
//
Query:       CDO71194.1  [L=1521]
Description: hypothetical protein BN946_scf184845.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-59  200.5   0.0    1.9e-32  112.9   0.0    2.1  2  PIF1             PIF1-like helicase
    3.1e-36  125.4   0.1    6.5e-36  124.3   0.1    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
    1.4e-08   34.7  14.5      0.048   14.1   0.3    6.4  5  zf-C2H2          Zinc finger, C2H2 type
    3.4e-07   30.5  24.5       0.23   12.4   0.1    7.9  7  zf-C2H2_4        C2H2-type zinc finger
    7.3e-06   25.8   0.0    1.3e-05   25.0   0.0    1.4  1  AAA_30           AAA domain
    1.8e-05   25.0  11.4        4.7    7.7   0.1    6.2  6  zf-met           Zinc-finger of C2H2 type
    7.8e-05   22.6  11.7    7.8e-05   22.6  11.7    4.1  3  zf-RING_5        zinc-RING finger domain
    0.00082   19.2  12.8    0.00082   19.2  12.8    3.4  3  zf-C3HC4_2       Zinc finger, C3HC4 type (RING finger)
     0.0014   19.0  11.9     0.0014   19.0  11.9    4.0  3  zf-RING_2        Ring finger domain
     0.0028   18.1   0.0       0.01   16.2   0.0    1.9  1  AAA_16           AAA ATPase domain
      0.003   16.4   0.1     0.0049   15.8   0.1    1.2  1  DUF2791          P-loop Domain of unknown function (DUF2791)
      0.004   17.1   9.6      0.015   15.3   8.4    2.7  2  zf-RING_UBOX     RING-type zinc-finger
  ------ inclusion threshold ------
      0.023   15.0   0.0      0.053   13.9   0.0    1.5  1  AAA_19           AAA domain
      0.035   14.4  19.6        1.4    9.3   0.0    6.0  5  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
      0.063   12.2   0.0       0.11   11.4   0.0    1.3  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.083   12.8   0.0       0.44   10.4   0.0    2.2  2  NACHT            NACHT domain
       0.69    9.7   4.9        2.9    7.8   0.0    3.5  3  zf-C2H2_11       zinc-finger C2H2-type
        0.7   10.2   2.8        4.4    7.7   0.3    2.8  2  DUF2175          Uncharacterized protein conserved in archaea
          1    9.0  11.3         15    5.3   0.2    5.2  5  zf_UBZ           Ubiquitin-Binding Zinc Finger
        2.6    8.1  12.2         19    5.4   0.1    4.5  4  zf-C2H2_6        C2H2-type zinc finger
        4.9    7.4  14.3          3    8.1  10.9    2.6  1  zf-C3HC4_4       zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   2.2e-35   1.9e-32       2     127 ..     666     792 ..     665     795 .. 0.97
   2 !   86.2   0.0   2.7e-27   2.3e-24     153     362 ..     794     979 ..     791     981 .. 0.89

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 2.2e-35
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH.HHHTSCCCHHH CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrtahsrfkiplekdeestc.kikrgsklael 99 
                 +n+eQ+++fd++++av + ++  +Fv+G +G gKtfl ++++   r++++iv+a+A s  Aa l +gGrt+hs fk+p+++++e  +  i+r+s++ el
  CDO71194.1 666 FNAEQRSIFDQVVAAVERGQSLQLFVDGKAGRGKTFLVNTICDHFRARNSIVIATATSAYAAQLYPGGRTTHSAFKVPVNEHNEMLLsPIERNSSRGEL 764
                 599******************************************************************************99999989********** PP

                 HHC-SEEEEECGGGSBHHHHHHHHHHHH CS
        PIF1 100 lkktsliiwDEapmverecfealdrtlr 127
                 l ++ +iiwDEapm+++ ++  +d tl+
  CDO71194.1 765 LCEAAVIIWDEAPMANKAVLACIDDTLQ 792
                 ************************9986 PP

  == domain 2  score: 86.2 bits;  conditional E-value: 2.7e-27
                 -----SSSSS---BGC...CSCHHHH--EEEE-S-STTTT...........HHHHHHHHHHHCT---CCCCHH.................HHCHCCS-- CS
        PIF1 153 ilPviekgsraeivaasikeSklWkevkvlkLtknmRllsesldetekkelkeFskwllkigdGkineedeeealieiPedlllkksedkieeivsevy 251
                   Pvi++g+ra+iv+asi++S+lW+++ + +L   +R +++           eF++++ +igdG  ++            d+l  ++    ++++ +vy
  CDO71194.1 794 TCPVIRRGTRAQIVDASIRSSPLWDHFAIAHLFTPIRNAAD----------PEFASFVDSIGDGAGPDVA---------LDML--EKAADASTLIAFVY 871
                 67*************************************98..........79***********999887.........4566..55556788999*** PP

                 -SS--...........EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT CS
        PIF1 252 gdllqeltdkeyleerailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqs 350
                 +  +   +++    +r il+ptn +vd+ N+ v++++pg +++yl++Ds+++ + +  e       ++  +    glp+h+L +kv  +  llrNl+ +
  CDO71194.1 872 PPQVL--NNPAMCVRRSILAPTNAQVDKYNEIVINRIPGPQRTYLAADSLKEVEAAGIE-SPDSVLDYVARQTPPGLPPHSLTIKVNGVYRLLRNLSID 967
                 98554..699999************************************8887776555.555666888899999************9*********** PP

                 -SC-TCEEEEEE CS
        PIF1 351 aGLcNGtrlivt 362
                 +GL+   r++++
  CDO71194.1 968 RGLVKNVRVLIV 979
                 ****99999887 PP

>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.1   7.6e-39   6.5e-36      12     190 .]      90     255 ..      80     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 7.6e-39
  Helitron_like_N  12 ehsrflflafnllqqyvvdayakveeerlsflrknqkelraesltgeeLkealeeetedeelkllgklvilpssvpgsprymqekrqdlmaivr 105
                      +++r    +++l+ +yvvd++ +  e rl+++r nq+++r ++ ++  L ++ ++           + v+lpss+ gs+r   e+  d++ai+ 
       CDO71194.1  90 REER-FAIFGRLTNEYVVDMFSRNLEARLHYIRSNQQRIRQDDAEQMGLGAVEDN-----------ENVYLPSSFLGSNRWAAEQIADSLAIAA 171
                      4555.3346789999************************9998888666666555...........58************************** PP

  Helitron_like_N 106 elgkPdlFiTltcndkwpeikeelrkkkkaqtaadrpdivarvFhrkleaflkdllkegvf...GkvsayvytvEfQkRGlpHaHlLl 190
                       +g+P++FiT tcn  wpei  +l  +++ q++ d p++v+rvF+rkl ++ + l + ++f   Gk+  +v++vEfQkRGlpHaH+Ll
       CDO71194.1 172 MHGAPTFFITNTCNRAWPEIVSQL--RPG-QEYHDLPVVVCRVFKRKLALLQQTL-RTTMFpdaGKLLYMVHSVEFQKRGLPHAHILL 255
                      ************************..999.******************9998888.778884446777788889************97 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0037       3.1       1      21 [.     992    1012 ..     992    1017 .. 0.93
   2 !   14.1   0.3   5.6e-05     0.048       2      23 .]    1019    1040 ..    1019    1040 .. 0.97
   3 ?    5.9   0.0     0.023        19       2      23 .]    1070    1092 ..    1070    1092 .. 0.96
   4 !   10.4   0.5   0.00088      0.75       2      21 ..    1096    1115 ..    1095    1120 .. 0.92
   5 ?    0.5   0.1       1.2     1e+03       3      10 ..    1505    1512 ..    1504    1517 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0037
                  EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2    1 ykCpdCgksFkrksnLkrHir 21  
                  +kCp Cg  F++++ L  H r
  CDO71194.1  992 FKCPPCGVEFSSSEALAIHFR 1012
                  89*****************87 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.6e-05
                  EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2    2 kCpdCgksFkrksnLkrHirtH 23  
                  kCp C+  F ++ +Lk H+ +H
  CDO71194.1 1019 KCPRCNSAFVDQTQLKLHMAVH 1040
                  7*******************99 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.023
                  EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2    2 kCpdCgksFkrksnLkrHirt.H 23  
                  +C +C + F +  +L +H+ t H
  CDO71194.1 1070 TCFVCEEGFYQDADLDKHLATaH 1092
                  7*******************999 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00088
                  EETTTTEEESSHHHHHHHHH CS
     zf-C2H2    2 kCpdCgksFkrksnLkrHir 21  
                  +C+ C + F++ ++L++H+ 
  CDO71194.1 1096 RCSRCRRQFRSADELQNHYL 1115
                  7*****************85 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.2
                  ETTTTEEE CS
     zf-C2H2    3 CpdCgksF 10  
                  Cp+Cgk F
  CDO71194.1 1505 CPVCGKLF 1512
                  *****966 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00027      0.23       1      22 [.     992    1013 ..     992    1014 .. 0.94
   2 !   11.3   0.2   0.00059       0.5       2      23 ..    1019    1040 ..    1018    1041 .. 0.95
   3 ?    1.5   0.2      0.86   7.3e+02       1      21 [.    1044    1063 ..    1044    1065 .. 0.90
   4 ?    4.1   0.0      0.12     1e+02       2      24 .]    1070    1092 ..    1069    1092 .. 0.85
   5 !   11.1   0.3    0.0007       0.6       2      20 ..    1096    1114 ..    1095    1117 .. 0.92
   6 ?   -0.8   0.3       4.8   4.1e+03       2      21 ..    1122    1141 ..    1121    1144 .. 0.85
   7 ?    1.8   0.1      0.69   5.9e+02       3      10 ..    1505    1512 ..    1504    1519 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00027
   zf-C2H2_4    1 fkCpiCgksFsskkaLlrHlkt 22  
                  fkCp Cg  Fss++aL  H+++
  CDO71194.1  992 FKCPPCGVEFSSSEALAIHFRN 1013
                  8****************9*985 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00059
   zf-C2H2_4    2 kCpiCgksFsskkaLlrHlkth 23  
                  kCp C+  F ++++L+ H++ h
  CDO71194.1 1019 KCPRCNSAFVDQTQLKLHMAVH 1040
                  8******************998 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.86
   zf-C2H2_4    1 fkCpiCgksFsskkaLlrHlk 21  
                  f C  Cg+   ++++ ++H k
  CDO71194.1 1044 FACGPCGREVETSER-QKHYK 1063
                  78********99999.99987 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.12
   zf-C2H2_4    2 kCpiCgksFsskkaLlrHlkthH 24  
                  +C +C + F    +L +Hl+t H
  CDO71194.1 1070 TCFVCEEGFYQDADLDKHLATAH 1092
                  6999*****66666*****9988 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.0007
   zf-C2H2_4    2 kCpiCgksFsskkaLlrHl 20  
                  +C+ C++ F+s ++L++H 
  CDO71194.1 1096 RCSRCRRQFRSADELQNHY 1114
                  7*****************7 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 4.8
   zf-C2H2_4    2 kCpiCgksFsskkaLlrHlk 21  
                   C +C   F +  a  +H+ 
  CDO71194.1 1122 HCAVCEIGFIDDVACDKHMD 1141
                  5999*****99999999995 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.69
   zf-C2H2_4    3 CpiCgksF 10  
                  Cp+Cgk F
  CDO71194.1 1505 CPVCGKLF 1512
                  *****998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.5e-08   1.3e-05       3     128 ..     667     806 ..     665     864 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.5e-08
      AAA_30   3 naeQaaaveallt...sgdrva.vltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa......eelgieastiakllkrlk.......... 81 
                 naeQ+++++++++    g+ ++ ++ G AG GKt++++++ ++++a++  vi+ A ++ aA+          ++ ++ +         +          
  CDO71194.1 667 NAEQRSIFDQVVAaveRGQSLQlFVDGKAGRGKTFLVNTICDHFRARNSIVIATATSAYAAQLYPggrtthSAFKVPVNEH-------Nemllspiern 758
                 78888877766541113444442688*******************998766666666666665443332222333343333.......24455567799 PP

      AAA_30  82 ...grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQl 128
                    g + l ++ ++i DEa m++ + la + + +++    vi  G ++Q 
  CDO71194.1 759 ssrG-ELLCEAAVIIWDEAPMANKAVLACIDDTLQR-TCPVIRRGTRAQI 806
                 9842.5667779**********99999888777777.7778877877775 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0083       7.1       1      21 [.     992    1012 ..     992    1012 .. 0.94
   2 ?    4.5   0.1     0.058        49       3      21 ..    1020    1038 ..    1018    1040 .. 0.92
   3 ?    1.7   0.0      0.42   3.6e+02       2      21 ..    1070    1089 ..    1069    1090 .. 0.93
   4 !    7.7   0.1    0.0055       4.7       2      20 ..    1096    1114 ..    1095    1115 .. 0.95
   5 ?    6.1   0.1     0.018        15       2      20 ..    1122    1140 ..    1121    1141 .. 0.94
   6 ?   -1.8   0.1       5.7   4.8e+03       3      10 ..    1505    1512 ..    1504    1512 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0083
      zf-met    1 fyCelCnvtfnsesqlksHlq 21  
                  f C+ C v f+s  +l  H++
  CDO71194.1  992 FKCPPCGVEFSSSEALAIHFR 1012
                  78*****************86 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.058
      zf-met    3 CelCnvtfnsesqlksHlq 21  
                  C+ Cn  f +++qlk H++
  CDO71194.1 1020 CPRCNSAFVDQTQLKLHMA 1038
                  99***************95 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.42
      zf-met    2 yCelCnvtfnsesqlksHlq 21  
                  +C +C   f+  ++l+ Hl+
  CDO71194.1 1070 TCFVCEEGFYQDADLDKHLA 1089
                  699***************95 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0055
      zf-met    2 yCelCnvtfnsesqlksHl 20  
                   C+ C ++f s   l++H+
  CDO71194.1 1096 RCSRCRRQFRSADELQNHY 1114
                  5*****************9 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.018
      zf-met    2 yCelCnvtfnsesqlksHl 20  
                  +C +C + f + ++ + H+
  CDO71194.1 1122 HCAVCEIGFIDDVACDKHM 1140
                  8***************998 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 5.7
      zf-met    3 CelCnvtf 10  
                  C++C + f
  CDO71194.1 1505 CPVCGKLF 1512
                  ****9876 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.9   4.2e+03      27      41 ..     785     797 ..     784     799 .. 0.87
   2 ?    0.4   2.4      0.77   6.6e+02       1      28 [.    1096    1126 ..    1096    1137 .. 0.68
   3 !   22.6  11.7   9.2e-08   7.8e-05       1      44 []    1469    1510 ..    1469    1510 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.9
   zf-RING_5  27 kClkkllekeavCpi 41 
                 +C++  l  +++Cp+
  CDO71194.1 785 ACIDDTL--QRTCPV 797
                 6999999..9****7 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.77
   zf-RING_5    1 hCnkCfekl...skeek...fyltsCgHifCekC 28  
                  +C++C++++       +    yl+s  H  C  C
  CDO71194.1 1096 RCSRCRRQFrsaD---ElqnHYLVSPVHPHCAVC 1126
                  6********5433...333466666666666666 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 9.2e-08
   zf-RING_5    1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCrk 44  
                  hC +C +      ++  t CgHifC +C++++l+k   Cp+C+k
  CDO71194.1 1469 HCRSCLQDP--CVAPTATICGHIFCTACIMQELAKTGSCPVCGK 1510
                  899999999..899****************************86 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.6       8.1   6.9e+03      34      40 .]    1017    1023 ..    1013    1023 .. 0.83
   2 ?   -2.1   0.2       4.3   3.6e+03       8      26 ..    1109    1126 ..    1107    1130 .. 0.68
   3 !   19.2  12.8   9.6e-07   0.00082       5      40 .]    1470    1508 ..    1469    1508 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.1
  zf-C3HC4_2   34 kneCPlC 40  
                  + +CP C
  CDO71194.1 1017 HPKCPRC 1023
                  679**99 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.3
  zf-C3HC4_2    8 mlkdpsvvtpCgHvfCqkC 26  
                  +l++  ++    H +C+ C
  CDO71194.1 1109 ELQNH-YLVSPVHPHCAVC 1126
                  56664.5566678888888 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 9.6e-07
  zf-C3HC4_2    5 Cldmlkdps...vvtpCgHvfCqkCilrsLeekneCPlC 40  
                  C   l+dp    + t CgH fC  Ci++ L +  +CP+C
  CDO71194.1 1470 CRSCLQDPCvapTATICGHIFCTACIMQELAKTGSCPVC 1508
                  4444555531115679*********************** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.3       7.2   6.1e+03      34      43 ..    1014    1023 ..     990    1024 .. 0.52
   2 ?   -2.4   1.0       7.5   6.4e+03       3      17 ..    1097    1111 ..    1095    1128 .. 0.62
   3 !   19.0  11.9   1.6e-06    0.0014       3      43 ..    1470    1508 ..    1469    1509 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.2
   zf-RING_2   34 lrssstCPlC 43  
                  ++ +++CP C
  CDO71194.1 1014 FAVHPKCPRC 1023
                  4456668877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.5
   zf-RING_2    3 CpICleelssadsvl 17  
                  C+ C  ++ sad+++
  CDO71194.1 1097 CSRCRRQFRSADELQ 1111
                  888888888777765 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1.6e-06
   zf-RING_2    3 CpICleelssadsvlllpCgHvfhreClerwlrssstCPlC 43  
                  C  Cl++ + a +++   CgH+f+  C+++ l+++ +CP+C
  CDO71194.1 1470 CRSCLQDPCVAPTAT--ICGHIFCTACIMQELAKTGSCPVC 1508
                  888975555444433..2*********************** PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05      0.01       8      63 ..     670     725 ..     668     768 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
      AAA_16   8 eleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 +++ + +++ +v +g++  +++ G +G GK+ lv+++ +++++++ i++++ +  +
  CDO71194.1 670 QRSIFDQVVAAVERGQSLQLFVDGKAGRGKTFLVNTICDHFRARNSIVIATATSAY 725
                 4555578889999*******************************999987766665 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.7e-06    0.0049      36      91 ..     673     729 ..     667     740 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.7e-06
     DUF2791  36 alledlervaeggaafrfirGeYGsGKtFllqllreralergfvvaeadls.perrL 91 
                  +++ +++v++g++   f+ G+ G GKtFl++++  + ++r+ +v+    s    +L
  CDO71194.1 673 IFDQVVAAVERGQSLQLFVDGKAGRGKTFLVNTICDHFRARNSIVIATATSaYAAQL 729
                 45677899*********************************9998877766455555 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.3   4.5e+03      18      26 ..     571     585 ..     570     594 .. 0.70
   2 !   15.3   8.4   1.7e-05     0.015       1      39 []    1470    1506 ..    1470    1506 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.3
  zf-RING_UBOX  18 HtFCreCl......w 26 
                   H ++ eC+      w
    CDO71194.1 571 HLLHNECIptpravW 585
                   999*****6554443 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.7e-05
  zf-RING_UBOX    1 CpICl.elftdP..lvlpCGHtFCreClwelskslegafkCP 39  
                    C  Cl ++   P  +   CGH+FC  C+    + l ++ +CP
    CDO71194.1 1470 CRSCLqDPCVAPtaT--ICGHIFCTACI---MQELAKTGSCP 1506
                    444553344466322..4**********...89999999999 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.2e-05     0.053       5     126 ..     681     791 ..     677     808 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-05
      AAA_19   5 vealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle.eaeeekklqe 102
                 ve  ++  l+v + +G GKT ++++i+ ++ +++     +i++++ t+  a +l           +T H+   + +++ +++ l+ +e ++++ + l e
  CDO71194.1 681 VERGQSLQLFVDGKAGRGKTFLVNTICDHFRARN-----SIVIATATSAYAAQLYPGG-------RTTHSAFKVPVNEHNEMLLSPIErNSSRGELLCE 767
                 555566678999******************9988.....7899999998888887655.......8889776777777777777777754455555655 PP

      AAA_19 103 eellivDEfqdvdelqyrLlkall 126
                 ++++i DE+ + ++   + ++  l
  CDO71194.1 768 AAVIIWDEAPMANKAVLACIDDTL 791
                 559999**9999977777666665 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0016       1.4       1      22 [.     991    1012 ..     991    1013 .. 0.94
   2 ?    2.1   0.1      0.29   2.4e+02       3      21 ..    1019    1037 ..    1017    1038 .. 0.90
   3 ?    3.2   0.1      0.13   1.1e+02       3      22 ..    1070    1089 ..    1068    1091 .. 0.91
   4 ?    7.7   0.2    0.0052       4.4       4      21 ..    1097    1114 ..    1096    1115 .. 0.89
   5 ?    1.9   0.8      0.34   2.9e+02       4      21 ..    1123    1140 ..    1122    1141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0016
                   ECBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz    1 qfYCvlCdKyFksenaldnHlk 22  
                   +f C+ C   F+s++al  H++
   CDO71194.1  991 KFKCPPCGVEFSSSEALAIHFR 1012
                   69***************99986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.29
                   BBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz    3 YCvlCdKyFksenaldnHl 21  
                    C+ C+  F ++ +l+ H+
   CDO71194.1 1019 KCPRCNSAFVDQTQLKLHM 1037
                   5888**************8 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.13
                   BBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz    3 YCvlCdKyFksenaldnHlk 22  
                    C +C+  F  + +ld+Hl 
   CDO71194.1 1070 TCFVCEEGFYQDADLDKHLA 1089
                   5*****************96 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0052
                   BTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz    4 CvlCdKyFksenaldnHl 21  
                   C  C ++F s+  l+nH+
   CDO71194.1 1097 CSRCRRQFRSADELQNHY 1114
                   555**************7 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.34
                   BTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz    4 CvlCdKyFksenaldnHl 21  
                   C +C+  F+++ a d+H+
   CDO71194.1 1123 CAVCEIGFIDDVACDKHM 1140
                   999*****9999999997 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.11      14      84 ..     685     768 ..     673     781 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
  TrwB_AAD_bind  14 etqhilivGttGsGKtqalekllrairargdraivlDltGafvsrfyd..............egkdillnPlDaRsaaWsvfaei 84 
                       ++++ G +G GKt  ++ + ++ rar+  ++++ +t a+ ++ y               e++++ll P++++s + ++++e+
     CDO71194.1 685 QSLQLFVDGKAGRGKTFLVNTICDHFRARNS-IVIATATSAYAAQLYPggrtthsafkvpvnEHNEMLLSPIERNSSRGELLCEA 768
                    55678999*********************85.77888888888888888************9999***********998888886 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00052      0.44       3      26 ..     689     712 ..     687     717 .. 0.87
   2 ?   -2.0   0.0       3.5     3e+03      37      99 ..     868     928 ..     857     978 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00052
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 +++ G+aG GKT L+  +++  ++
  CDO71194.1 689 LFVDGKAGRGKTFLVNTICDHFRA 712
                 789***************998766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
                 EEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH CS
       NACHT  37 vFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgq 99 
                  F+ + + l+ +  a+++++ + ++  +  ++ +e++++++  p+r+ l  D+l e+++   +
  CDO71194.1 868 AFVYPPQVLNNP--AMCVRRSILAPTNAQVDKYNEIVINRIPGPQRTYLAADSLKEVEAAGIE 928
                 566666666665..3578888888888888888899999999999999999999999885444 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0033       2.9       5      24 ..     992    1011 ..     991    1017 .. 0.87
   2 ?   -1.5   0.1       2.6   2.2e+03       6      25 ..    1019    1038 ..    1018    1040 .. 0.87
   3 ?    1.6   0.6      0.29   2.4e+02       5      23 ..    1095    1113 ..    1093    1117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0033
  zf-C2H2_11    5 cqCleCGlcftSqlsLsRHl 24  
                  ++C  CG+ f+S+ +L  H 
  CDO71194.1  992 FKCPPCGVEFSSSEALAIHF 1011
                  58***********9998885 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.6
  zf-C2H2_11    6 qCleCGlcftSqlsLsRHlf 25  
                  +C  C   f  q  L+ H+ 
  CDO71194.1 1019 KCPRCNSAFVDQTQLKLHMA 1038
                  89999999999999999995 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.29
  zf-C2H2_11    5 cqCleCGlcftSqlsLsRH 23  
                   +C  C + f S+  L+ H
  CDO71194.1 1095 TRCSRCRRQFRSADELQNH 1113
                  69********999888888 PP

>> DUF2175  Uncharacterized protein conserved in archaea (DUF2175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.44   3.8e+02       2      30 ..     991    1020 ..     990    1038 .. 0.88
   2 ?    7.7   0.3    0.0052       4.4       1      34 [.    1042    1075 ..    1042    1094 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.44
     DUF2175    2 kwkCyiCgkeivegekFTft.kkgvvHyeC 30  
                  k+kC  Cg e+ + e   +  ++ +vH +C
  CDO71194.1  991 KFKCPPCGVEFSSSEALAIHfRNFAVHPKC 1020
                  89***************999999****999 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0052
     DUF2175    1 kkwkCyiCgkeivegekFTftkkgvvHyeClvek 34  
                  kk+ C  Cg e+ + e+   +k+++ H +C+v +
  CDO71194.1 1042 KKFACGPCGREVETSERQKHYKESPNHPTCFVCE 1075
                  69*****************************865 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.45   3.8e+02       3      16 ..     992    1005 ..     991    1008 .. 0.87
   2 ?    2.0   0.1      0.18   1.6e+02       4      13 ..    1019    1028 ..    1017    1036 .. 0.81
   3 ?    5.3   0.2     0.017        15       2      20 ..    1043    1061 ..    1042    1062 .. 0.93
   4 ?    3.6   0.1      0.06        51       5      20 ..    1097    1113 ..    1095    1114 .. 0.89
   5 ?   -0.8   0.0       1.4   1.2e+03       4      13 ..    1504    1513 ..    1501    1516 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.45
      zf_UBZ    3 ylCerCgkeipese 16  
                  + C+ Cg e+++se
  CDO71194.1  992 FKCPPCGVEFSSSE 1005
                  89*******99987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
      zf_UBZ    4 lCerCgkeip 13  
                   C+rC++ + 
  CDO71194.1 1019 KCPRCNSAFV 1028
                  5*****9875 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.017
      zf_UBZ    2 tylCerCgkeipeselqEH 20  
                   + C  Cg+e+++se+q H
  CDO71194.1 1043 KFACGPCGREVETSERQKH 1061
                  589**************99 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.06
      zf_UBZ    5 CerCgkeipes.elqEH 20  
                  C+rC +++ ++ elq H
  CDO71194.1 1097 CSRCRRQFRSAdELQNH 1113
                  ********999888888 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.4
      zf_UBZ    4 lCerCgkeip 13  
                   C+ Cgk ++
  CDO71194.1 1504 SCPVCGKLFL 1513
                  7******886 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.033        28       2      17 ..     992    1007 ..     991    1011 .. 0.88
   2 ?    1.0   0.3      0.51   4.4e+02       3      26 ..    1019    1042 ..    1019    1043 .. 0.93
   3 ?    5.4   0.1     0.023        19       2      20 ..    1095    1113 ..    1094    1113 .. 0.89
   4 ?    1.9   0.3      0.27   2.3e+02       4      11 ..    1505    1512 ..    1504    1512 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.033
   zf-C2H2_6    2 heCsvCsksFpslqaL 17  
                  ++C+ C+ +F+s  aL
  CDO71194.1  992 FKCPPCGVEFSSSEAL 1007
                  9***********7777 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.51
   zf-C2H2_6    3 eCsvCsksFpslqaLggHkksHrk 26  
                  +C+ C+  F  ++ L  H++ H+k
  CDO71194.1 1019 KCPRCNSAFVDQTQLKLHMAVHEK 1042
                  7*******************9998 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.023
   zf-C2H2_6    2 heCsvCsksFpslqaLggH 20  
                  ++Cs C ++F+s ++L  H
  CDO71194.1 1095 TRCSRCRRQFRSADELQNH 1113
                  79**********9999766 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.27
   zf-C2H2_6    4 CsvCsksF 11  
                  C+vC+k F
  CDO71194.1 1505 CPVCGKLF 1512
                  ******99 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.9    0.0035         3       4      42 .]    1470    1508 ..    1468    1508 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
  zf-C3HC4_4    4 CldYLekP....vsleCGhsfClsCisslqkepdgeqllCplC 42  
                  C++ L++P    +   CGh+fC  Ci +   +      +Cp+C
  CDO71194.1 1470 CRSCLQDPcvapTATICGHIFCTACIMQELAKT----GSCPVC 1508
                  6666666511116677**********8755555....469999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.52
# Mc/sec: 8869.78
//
Query:       CDO71195.1  [L=422]
Description: Ferroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-41  141.0   0.1      8e-36  123.5   0.1    3.4  3  Cu-oxidase    Multicopper oxidase
    4.1e-27   94.6   2.2    2.2e-24   85.7   0.3    2.6  3  Cu-oxidase_2  Multicopper oxidase
    1.4e-17   63.8   0.4    1.4e-17   63.8   0.4    3.8  5  Cu-oxidase_3  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0     0.003        18     107     136 ..      15      46 ..       8      59 .. 0.78
   2 !  123.5   0.1   1.3e-39     8e-36       1     156 [.      72     241 ..      72     244 .. 0.82
   3 !    7.9   0.0   0.00053       3.2      82     133 ..     350     415 ..     341     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.003
                 ESCEEE-TTEEEEEEEEE-S.S.SEEEEEEEE CS
  Cu-oxidase 107 vdsldIavGqrysvlvtanq.a.pgnYwivas 136
                 v++  I +Gq+++ +v  n  +  g+Yw++ +
  CDO71195.1  15 VTQCGIPPGQTFDYVVPVNSsNqWGTYWVHSH 46 
                 5666799*********99653249*****984 PP

  == domain 2  score: 123.5 bits;  conditional E-value: 1.3e-39
                 EEEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C............TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEE CS
  Cu-oxidase   1 eeyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk............dgaslatltvepgktyrlriinvsaddslnfsI 87 
                 ee++++l+Dwyh+++++l + ++ s ++p +++pvpd+ li   ++  +    k            + +++atl ++pgktyrlriin+sa  +++f+I
  CDO71195.1  72 EEFTVILGDWYHDQHDALLQ-QFVSIANPGGAEPVPDSALIYFAQNGTYLGP-KsgtspdpvtaavGFNENATLPFQPGKTYRLRIINTSAFAAFFFWI 168
                 578999*************9.77777889999*******9965333332222.13457778888889999***************************** PP

                 TSB-EEEEEETCETTSEEEESCEEE-TTEEEEEEEEE.-SSSEEEEEEEE...GSSSCHHHHTTSEEEEEEEE CS
  Cu-oxidase  88 eGHkltVvevDgvyvepvevdsldIavGqrysvlvta.nqapgnYwivas...grsnlieafengtaaailry 156
                 +GH + ++e+Dg+ ve+  +d + ++v+qrysvlvta n+++ n++i+a+    ++++ ++  n++ +  + y
  CDO71195.1 169 DGHDMRIIEADGTDVEESPIDLVSVTVAQRYSVLVTArNDTNANWAIHANmdtDMFDTVPDTLNPNITSSITY 241
                 *************************************5558********866633444555566666655555 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00053
                 BEEEEETSB-EEEEEE...............TCETTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEE CS
  Cu-oxidase  82 slnfsIeGHkltVvev...............DgvyvepvevdsldIavGqrysvlvtanqapgnYwi 133
                  ++f ++GHk+++v                   +  +p + d++++ +G++++  v a++ pg +++
  CDO71195.1 350 KHPFHLHGHKMQLVGRatdytsddptlnpplNNSQPNPMRRDTVQVPSGESVTLRVVADN-PGVWFF 415
                 689***********988999999998888665556669999*********9999999998.888876 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.58   3.5e+03     108     122 ..      36      50 ..      20      64 .. 0.68
   2 !    7.7   0.0   0.00045       2.7      32     120 ..     140     220 ..     115     224 .. 0.76
   3 !   85.7   0.3   3.7e-28   2.2e-24      30     116 ..     326     416 ..     300     419 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.58
                   .S-EEEEEEESSHHH CS
  Cu-oxidase_2 108 dnpGvwllHCHilwH 122
                   ++ G + +H+H    
    CDO71195.1  36 NQWGTYWVHSHAKGQ 50 
                   456889999998744 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00045
                   SEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSH CS
  Cu-oxidase_2  32 tnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHil 120
                     ++ ++ g++ ++ i n++ +    f ++Ghd+++++ ++ +           e p+    v+v     v +  + d    w +H  ++
    CDO71195.1 140 NATLPFQPGKTYRLRIINTSAFaAFFFWIDGHDMRIIEADGTD---------VEESPIDLVSVTVAQRYSVLVTARNDTNANWAIHANMD 220
                   4556667799999999999999877899*********999999.........22455666666666666777777778888899998876 PP

  == domain 3  score: 85.7 bits;  conditional E-value: 3.7e-28
                   TSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECC..CCCCTCCSSGC......CGSSCBSEEEE-TTEEEEEEEES.S-EEEEEE CS
  Cu-oxidase_2  30 entnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgn..dpeedpksynl......enpvrrdtvqvppggwvairfkadnpGvwllH 116
                    +   ++l++ ev++iv++n + ++HPfHlHGh++q++gr ++   d      ++n        np+rrdtvqvp+g+ v++r+ adnpGvw++H
    CDO71195.1 326 YGPTSFVLDHLEVIDIVVKNGDAGKHPFHLHGHKMQLVGRATDYtsD----DPTLNPplnnsqPNPMRRDTVQVPSGESVTLRVVADNPGVWFFH 416
                   56678999******************************999999442....3444444455789******************************* PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.4   2.4e-21   1.4e-17      59     118 ..       4      65 ..       1      66 [. 0.92
   2 ?   -1.2   0.0      0.32   1.9e+03      66      95 ..     136     165 ..     130     180 .. 0.73
   3 ?   -0.5   0.1      0.19   1.2e+03      30      54 ..     194     218 ..     187     260 .. 0.70
   4 ?   -2.2   0.0      0.68   4.1e+03      29      58 ..     331     360 ..     317     365 .. 0.66
   5 ?   -2.8   0.0         1   6.3e+03      29      89 ..     393     409 ..     388     418 .. 0.54

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2.4e-21
                   -GG.....GSCSGGG-B-TT-EEEEEEE--S..-SEEEEEEE--TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  59 rktswmDGvpgvtqcpiqpgesftyrftvkq..qagtlwYhshlslqqaaGlaGaiiiedke 118
                   ++tswmDG+ gvtqc i+pg++f+y ++v+   q gt+w hsh+++q+++Gl G+++i++++
    CDO71195.1   4 NSTSWMDGAVGVTQCGIPPGQTFDYVVPVNSsnQWGTYWVHSHAKGQYVDGLRGPVVIHPPK 65 
                   6799***********************99875589************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.32
                   .GSCSGGG-B-TT-EEEEEEE--S-SEEEE CS
  Cu-oxidase_3  66 Gvpgvtqcpiqpgesftyrftvkqqagtlw 95 
                   G++  ++ p qpg++++ r+  +   + ++
    CDO71195.1 136 GFNENATLPFQPGKTYRLRIINTSAFAAFF 165
                   666677788999999988887777444433 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.19
                   EEETT-EEEEEEEE-SSS-B-EEEE CS
  Cu-oxidase_3  30 evregdtvvvnvtNkldentsihwh 54 
                   +v +  +v v+ +N  + n +ih +
    CDO71195.1 194 TVAQRYSVLVTARNDTNANWAIHAN 218
                   5667778999999999999999975 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.68
                   EEEETT-EEEEEEEE-SSS-B-EEEET--S CS
  Cu-oxidase_3  29 ievregdtvvvnvtNkldentsihwhGlqq 58 
                   + ++  + + + v+N    +   h+hG ++
    CDO71195.1 331 FVLDHLEVIDIVVKNGDAGKHPFHLHGHKM 360
                   555555667788888876666777777655 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1
                   EEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S CS
  Cu-oxidase_3  29 ievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkq 89 
                   ++v                                             +ges+t r+ +++
    CDO71195.1 393 VQVP--------------------------------------------SGESVTLRVVADN 409
                   4444............................................4555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2765.24
//
Query:       CDO71196.1  [L=137]
Description: hypothetical protein BN946_scf184845.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.8    8.0  10.4        3.2    8.2   5.3    2.6  3  EGF_2     EGF-like domain


Domain annotation for each model (and alignments):
>> EGF_2  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.49   8.7e+03       7      10 ..      10      13 ..       4      14 .. 0.62
   2 ?    1.8   0.0     0.017   3.1e+02      27      32 .]     100     105 ..      97     105 .. 0.90
   3 ?    8.2   5.3   0.00018       3.2       7      21 ..     113     128 ..     106     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.49
       EGF_2  7 iCgg 10
                 C+g
  CDO71196.1 10 LCQG 13
                5666 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.017
       EGF_2  27 yqGktC 32 
                 +qG+tC
  CDO71196.1 100 WQGATC 105
                 9***** PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00018
       EGF_2   7 iCgghGtCvnqc.Gq.C 21 
                  C+ghG+Cv  c G+ C
  CDO71196.1 113 KCNGHGSCV-DCvGRgC 128
                 6*******7.4778777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 991.83
//
Query:       CDO71197.1  [L=1107]
Description: hypothetical protein BN946_scf184845.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-58  198.4   0.1      4e-58  196.7   0.0    1.8  2  Hira          TUP1-like enhancer of split
      3e-27   94.3  10.7    5.9e-07   30.1   0.1    6.3  5  WD40          WD domain, G-beta repeat
    1.2e-08   34.6   5.5    1.2e-08   34.6   5.5    2.3  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      2e-08   34.1   7.9    4.7e-08   32.9   7.9    1.7  1  zf-RING_UBOX  RING-type zinc-finger
    4.6e-08   33.3   0.7       0.17   12.2   0.0    5.6  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    7.4e-07   28.9   5.8    7.4e-07   28.9   5.8    2.2  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    8.9e-06   25.9   6.0    8.9e-06   25.9   6.0    2.0  1  zf-RING_2     Ring finger domain
    2.2e-05   24.3   6.1    2.2e-05   24.3   6.1    1.8  1  zf-RING_5     zinc-RING finger domain
    2.8e-05   24.2   7.1     0.0001   22.4   7.1    2.0  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    0.00016   21.5   4.9    0.00016   21.5   4.9    2.1  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0093   15.8   4.3      0.024   14.5   4.3    1.7  1  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.012   15.9   3.0      0.036   14.4   3.0    1.7  1  zf-rbx1       RING-H2 zinc finger domain
      0.015   15.6   7.4      0.022   15.1   0.2    2.9  3  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
      0.029   13.7   0.0      0.048   13.0   0.0    1.2  1  Mcl1_mid      Minichromosome loss protein, Mcl1, middle regio
      0.045   13.6   1.1       0.11   12.4   1.1    1.6  1  zf-RING_6     zf-RING of BARD1-type protein
      0.046   14.2   1.8        3.7    8.2   0.1    3.0  2  zf-C2H2       Zinc finger, C2H2 type
      0.066   13.6   0.2      0.066   13.6   0.2    3.2  3  zf-met        Zinc-finger of C2H2 type
       0.19   11.9   6.2        0.1   12.8   3.5    1.9  2  zf-RING_10    zinc RING finger of MSL2
       0.22   10.8   6.5       0.38   10.0   6.5    1.3  1  NOA36         NOA36 protein
       0.43   10.4   1.9       0.88    9.4   1.9    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.8   1.7e+03      10      36 ..     819     845 ..     818     846 .. 0.94
   2 !  196.7   0.0   4.5e-61     4e-58       1     222 []     849    1048 ..     849    1048 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.8
        Hira  10 lespasfLessgsyLlavtsvgllyvW 36 
                 l+sp+  L++ +++ ++v ++g++ v+
  CDO71197.1 819 LPSPILALAATSTFCAVVMQDGTVVVY 845
                 899*********************998 PP

  == domain 2  score: 196.7 bits;  conditional E-value: 4.5e-61
        Hira    1 GrrllPplvlespasfLessgsyLlavtsvgllyvWnvkkkkvllppvslapllssssrssekeltrapavtsasltsnGvpivtlsngdgylydks 97  
                  Grrl+P+l l++p+  L +s+++Ll++t +g+lyvW+v+k++++++p+s+++ll +s         ++ +v+s++++ nG+p+v+ls+g +y+yd+ 
  CDO71197.1  849 GRRLMPALNLGAPCHTLTASKDMLLVLTIAGMLYVWDVRKQSAKFTPTSISSLLAPS---------PNLSVASVTVRPNGAPVVQLSDGVAYSYDSC 936 
                  9******************************************************84.........99***************************** PP

        Hira   98 lktWlrvsdswwalgsqywdsrdsstsssassasgilsalerktneevlrkgrakllqrlaktllekegfenleesvtlahlEnrlaaallLgsadE 194 
                  l  W+++s++wwa+gs++w+ r++++++    a+g+++++e +++e++         +r      ek +  +++++ tl hlE++l+aa++L+s++E
  CDO71197.1  937 LLAWTKLSEPWWAEGSDAWQGRQRTNQAA---ARGPVAVIEGAITERMGV-----DNSRA-----EKVRPAWWNTALTLGHLESKLHAAKALDSPQE 1020
                  ************************99765...469***********9998.....22333.....344788************************** PP

        Hira  195 fkkwllaYakrLaeeglesrlrelckeL 222 
                  +k++ll+Yakr+a+eg++++++el+keL
  CDO71197.1 1021 YKQALLLYAKRIADEGFRAKAEELVKEL 1048
                  **************************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.6e-05     0.068      15      38 .]     260     283 ..     244     283 .. 0.86
   2 !   23.6   0.3   7.6e-08   6.8e-05       4      38 .]     302     337 ..     299     337 .. 0.91
   3 !   24.8   0.2   3.2e-08   2.8e-05       1      37 [.     363     400 ..     363     401 .. 0.95
   4 !   30.1   0.1   6.6e-10   5.9e-07       4      37 ..     408     442 ..     405     443 .. 0.90
   5 ?    3.4   0.0      0.18   1.6e+02      13      29 ..     465     480 ..     452     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.6e-05
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 s+ ++pdg+ +a+G+ D +vriW+
  CDO71197.1 260 SCHVHPDGSRIATGGLDAKVRIWS 283
                 6779*******************5 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 7.6e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l tlt H ++v  +++ ++g+wlasGsdD  v+iWd
  CDO71197.1 302 LCTLTMHtGPVLVVRWAHSGRWLASGSDDEIVMIWD 337
                 6789999888*************************9 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 3.2e-08
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++l+ l GH s+vt+la+sp  ++las + D  v iW
  CDO71197.1 363 WKPLKRLVGHeSDVTDLAWSPGDRYLASVGLDSAVFIW 400
                 689999****999**************9899******* PP

  == domain 4  score: 30.1 bits;  conditional E-value: 6.6e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +r+++ H ++v +++++p g +la+GsdD++vriW
  CDO71197.1 408 IRKIDQHqGFVKGVCWDPVGEFLATGSDDRSVRIW 442
                 5677889777************************* PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.18
                 EEEEEEETTSSEEEEEE CS
        WD40  13 vtslafspdgawlasGs 29 
                  + l++spdga +++ s
  CDO71197.1 465 FRRLSWSPDGAHITA-S 480
                 47899*******864.4 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.8       1.3   1.2e+03      17      29 ..      33      45 ..      12      51 .. 0.63
   2 !   34.6   5.5   1.3e-11   1.2e-08       2      38 ..     195     230 ..     194     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
  zf-C3HC4_2 17 pCgHvfCqkCilr 29
                + +H  C+kC  r
  CDO71197.1 33 ARNHPKCEKCNVR 45
                4578899999766 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 1.3e-11
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCP 38 
                 Cp+Cl+  + p + t+CgHvfC++Ci+ sL+ + +CP
  CDO71197.1 195 CPVCLEQTSIP-TATACGHVFCSSCIRYSLQFERQCP 230
                 ***********.9************************ PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   7.9   5.2e-11   4.7e-08       1      39 []     195     230 ..     195     230 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 5.2e-11
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreClwelskslegafkCP 39 
                   Cp+Cle+ + P   + CGH+FC++C+   + sl+ +++CP
    CDO71197.1 195 CPVCLEQTSIP-TaTACGHVFCSSCI---RYSLQFERQCP 230
                   ***********.5468**********...99********9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.96   8.6e+02      43      67 ..     260     284 ..     241     299 .. 0.82
   2 ?    5.4   0.1     0.026        23      38      67 ..     309     338 ..     300     349 .. 0.88
   3 ?    6.3   0.0     0.013        12      36      64 ..     371     399 ..     343     411 .. 0.80
   4 !   12.2   0.0   0.00019      0.17      29      66 ..     408     443 ..     399     449 .. 0.86
   5 ?    0.3   0.0      0.99   8.9e+02      41      60 ..     465     484 ..     452     494 .. 0.80
   6 ?   -1.4   0.0       3.3     3e+03      51      69 ..     831     849 ..     824     864 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.96
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrllda 67 
                  s + +pdg+ +a +  d +vr+ + 
   CDO71197.1 260 SCHVHPDGSRIATGGLDAKVRIWST 284
                  66779****************9875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.026
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrllda 67 
                   + v  ++W ++g+ La + +d  v + d 
   CDO71197.1 309 TGPVLVVRWAHSGRWLASGSDDEIVMIWDL 338
                  6678899******************99886 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.013
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrl 64 
                  +++s v++LaW+p ++ La +  d++v +
   CDO71197.1 371 GHESDVTDLAWSPGDRYLASVGLDSAVFI 399
                  67899**************9988887755 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00019
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  + ++  d++++ v++++W p g++La + +d +vr+  
   CDO71197.1 408 IRKI--DQHQGFVKGVCWDPVGEFLATGSDDRSVRIWR 443
                  5555..889999***********************975 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.99
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdg 60 
                   r L+W+pdg  +  + + +
   CDO71197.1 465 FRRLSWSPDGAHITASNATN 484
                  689*******9887766554 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 3.3
  ANAPC4_WD40  51 klLavaysdgevrlldaes 69 
                  ++ av+++dg+v +++   
   CDO71197.1 831 TFCAVVMQDGTVVVYSHTG 849
                  5678888888888887654 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7       2.1   1.9e+03      18      25 ..      35      42 ..      12      51 .. 0.62
   2 !   28.9   5.8   8.3e-10   7.4e-07       1      39 [.     195     230 ..     195     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
                S--B-CHH CS
    zf-C3HC4 18 kHsfCskC 25
                +H  C+kC
  CDO71197.1 35 NHPKCEKC 42
                45555555 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 8.3e-10
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCP 39 
                 Cp+Cle  ++p+ ++ C+H fCs+Cir  l+   +++CP
  CDO71197.1 195 CPVCLEQTSIPT-ATACGHVFCSSCIRYSLQ--FERQCP 230
                 ************.*****************9..677898 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   6.0   9.9e-09   8.9e-06       2      41 ..     194     230 ..     193     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 9.9e-09
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCP 41 
                 +Cp+Cle+ s    ++++ CgHvf+ +C++  l+ +++CP
  CDO71197.1 194 SCPVCLEQTSI---PTATACGHVFCSSCIRYSLQFERQCP 230
                 7*****77754...44455**********999*******9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   6.1   2.4e-08   2.2e-05       2      40 ..     195     230 ..     194     231 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.4e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCp 40 
                 C++C e++   + +  t+CgH+fC++C++ +l+ e++Cp
  CDO71197.1 195 CPVCLEQT---SIPTATACGHVFCSSCIRYSLQFERQCP 230
                 ********...99*******************9999**9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   7.1   1.2e-07    0.0001       1      28 [.     195     222 ..     195     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.2e-07
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCissl 28 
                 CP+Cl+  + P+  +CGh+fC sCi  +
  CDO71197.1 195 CPVCLEQTSIPTATACGHVFCSSCIRYS 222
                 *************************765 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   2.4       7.2   6.4e+03      19      30 ..      33      43 ..      10      50 .. 0.44
   2 !   21.5   4.9   1.8e-07   0.00016       4      41 ..     194     230 ..     192     231 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.2
                TEEEEEE-HHHH CS
  zf-C3HC4_3 19 pCgHlvlCeeCa 30
                  +H   Ce+C 
  CDO71197.1 33 ARNHP-KCEKCN 43
                22333.344444 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.8e-07
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-T CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllkrkkkCp 41 
                  C++Cle+ +  +   CgH+ +C++C +  l+ +++Cp
  CDO71197.1 194 SCPVCLEQTSIPTATACGHV-FCSSCIRYSLQFERQCP 230
                 7*******************.****************9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   4.3   2.6e-05     0.024       1      34 [.     195     230 ..     195     237 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk.dls.sCP 34 
                  C +C eq + +    CgH++C +C   + +++ +CP
   CDO71197.1 195 CPVCLEQTSIPTATACGHVFCSSCIRYSlQFErQCP 230
                  99**********************997768878899 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.0     4e-05     0.036      14      52 ..     195     230 ..     190     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-05
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCP 52 
                 c+ c ++ +  +p ++ +CgH+F   Ci+  l+ +++CP
  CDO71197.1 195 CPVCLEQTS--IPTAT-ACGHVFCSSCIRYSLQFERQCP 230
                 555555433..46666.9********************* PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   2.4e-05     0.022       2      21 ..      11      30 ..      10      31 .. 0.93
   2 ?    4.6   0.1     0.048        43       3      21 ..      38      56 ..      36      57 .. 0.92
   3 ?   -2.8   0.3       9.7   8.7e+03      20      26 ..    1004    1010 ..    1003    1010 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
                 CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHl 21
                 +YC lCd+yF ++ a  +Hl
   CDO71197.1 11 YYCSLCDRYFPDALARAQHL 30
                 8************9999997 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.048
                 BBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  3 YCvlCdKyFksenaldnHl 21
                  C+ C+  F + n+l+ H+
   CDO71197.1 38 KCEKCNVRFANGNSLRVHI 56
                 6999**************8 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 9.7
                   CTTSHHH CS
  zf-C2H2_jaz   20 HlkSKkH 26  
                   Hl SK H
   CDO71197.1 1004 HLESKLH 1010
                   *****99 PP

>> Mcl1_mid  Minichromosome loss protein, Mcl1, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.3e-05     0.048      96     228 ..     810     934 ..     794     976 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.3e-05
    Mcl1_mid  96 asnseWsvkLpegEevtavalgkkwvavaTskrylRiFslsGvqla.vlslpgpvVtlaaskdklavvyhegaplngnqeleyslldlskkkkkvlqre 193
                 +++++W   Lp    + a+a++++++av+ + +++ ++s+ G  l   l+l  p  tl+askd l+v + +g        l ++ ++ ++ k +  + +
  CDO71197.1 810 GKQTQWLDYLP--SPILALAATSTFCAVVMQDGTVVVYSHTGRRLMpALNLGAPCHTLTASKDMLLVLTIAG-------MLYVWDVRKQSAKFTPTSIS 899
                 34678999999..79***************************99753799999****************333.......33333333222222233445 PP

    Mcl1_mid 194 gplpLspgstLkwlgFseegdpviydsdgvlrvls 228
                 + l+ sp+ ++ +++   +g+pv+  sdgv + ++
  CDO71197.1 900 SLLAPSPNLSVASVTVRPNGAPVVQLSDGVAYSYD 934
                 55555777778888888888888888888877666 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   0.00012      0.11      16      52 ..     192     242 ..     185     248 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
   zf-RING_6  16 ilrepvcl........ggcehifcsnci..sdcfgsgcp...vcyt.pawi 52 
                 il  pvcl          c h+fcs ci  s  f   cp   + +t paw+
  CDO71197.1 192 ILSCPVCLeqtsiptaTACGHVFCSSCIrySLQFERQCPrndMRFTkPAWV 242
                 566666653322222257*********944556889999333234347776 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.072        65       1      13 [.      11      23 ..      11      31 .. 0.80
   2 ?    8.2   0.1    0.0042       3.7       2      21 ..      38      57 ..      38      62 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.072
                EEETTTTEEESSH CS
     zf-C2H2  1 ykCpdCgksFkrk 13
                y+C+ C++ F++ 
  CDO71197.1 11 YYCSLCDRYFPDA 23
                89********986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0042
                EETTTTEEESSHHHHHHHHH CS
     zf-C2H2  2 kCpdCgksFkrksnLkrHir 21
                kC++C+ +F +  +L++Hi 
  CDO71197.1 38 KCEKCNVRFANGNSLRVHIE 57
                7*****************95 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   7.4e-05     0.066       1      20 [.      11      30 ..      11      31 .. 0.96
   2 ?    5.3   0.0     0.031        28       3      20 ..      39      56 ..      37      57 .. 0.90
   3 ?   -2.5   0.4       8.9     8e+03      19      25 .]    1004    1010 ..    1003    1010 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-05
      zf-met  1 fyCelCnvtfnsesqlksHl 20
                +yC+lC+++f +  +  +Hl
  CDO71197.1 11 YYCSLCDRYFPDALARAQHL 30
                8******************8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.031
      zf-met  3 CelCnvtfnsesqlksHl 20
                Ce Cnv+f + ++l+ H 
  CDO71197.1 39 CEKCNVRFANGNSLRVHI 56
                888***********9996 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.9
      zf-met   19 HlqGKkH 25  
                  Hl +K H
  CDO71197.1 1004 HLESKLH 1010
                  *****99 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.9   4.4e+03      37      44 ..      36      43 ..      26      57 .. 0.71
   2 ?   12.8   3.5   0.00011       0.1       1      42 [.     193     231 ..     193     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.9
  zf-RING_10 37 kpsCsqCk 44
                +p+C++C+
  CDO71197.1 36 HPKCEKCN 43
                68899997 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00011
  zf-RING_10   1 lsCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsq 42 
                 lsC vC   L++   p+ + C+H  C +C++ + +++ +C++
  CDO71197.1 193 LSCPVC---LEQTSIPTATACGHVFCSSCIRYSLQFERQCPR 231
                 789999...7788899999******************99975 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.5   0.00042      0.38     184     295 ..      11     125 ..       7     136 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00042
       NOA36 184 ysclrckacycedhvrrkgfkyeknkaipcpkcgyetqetkdlslstrslk.fgrqkqadgsddddddeedsdydaylkalasg....ddeddegdedd 277
                 y c  c   + +  +r + +++ +n++  c kc+   ++ + l + +     +g  + +++ d+dd++  d  y+++ + ++ +    +++++e    d
  CDO71197.1  11 YYCSLCDRYFPDALARAQHLHFARNHP-KCEKCNVRFANGNSLRVHIELSAiHGGGE-DSDPDSDDENYIDDSYEGWEDDVGETrypeENDEEEPPVSD 107
                 779999999*************99986.7**************99987554155555.55566666677788899988887776443211111222222 PP

       NOA36 278 dddddeedddeeeddede 295
                 d++   +d+   edde +
  CDO71197.1 108 DEEVSPHDEYWSEDDEPD 125
                 222223333333333332 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00098      0.88       8      52 ..     189     230 ..     185     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00098
                 SBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-S CS
      zf-Nse   8 erislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCP 52 
                 +++ l CP+ l++   P t ++C HvF  + I   +  + + +CP
  CDO71197.1 189 GTFILSCPVCLEQTSIP-TATACGHVFCSSCIRYSL--QFERQCP 230
                 678899***********.679***********9999..6667787 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 6751.90
//
Query:       CDO71198.1  [L=425]
Description: hypothetical protein BN946_scf184845.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-43  146.1  12.3    1.5e-21   77.1   1.1    2.9  3  zf-PARP    Poly(ADP-ribose) polymerase and DNA-Ligase Zn-fing
  ------ inclusion threshold ------
       0.12   12.6   0.3          3    8.2   0.2    2.9  2  DUF2175    Uncharacterized protein conserved in archaea (DUF2
        1.8    9.0   5.4          8    6.9   0.0    3.1  3  DUF3280    Protein of unknown function (DUF2380)


Domain annotation for each model (and alignments):
>> zf-PARP  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.2     3e-25   1.8e-21       8      81 ..      29      98 ..      23      99 .. 0.91
   2 !   77.1   1.1   2.5e-25   1.5e-21       1      81 [.     150     228 ..     150     229 .. 0.96
   3 ?   -2.4   0.4       1.5   9.2e+03      57      57 ..     319     319 ..     277     350 .. 0.57

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 3e-25
                -B-SSS-.-B--SSSEEEEE-...------EEEEHHHHHTSSS--S-GGG.......EETTTTS-HHHHHHHHHH CS
     zf-PARP  8 akCkkCk.kkIakgelRlgkkveieeseskrWyHvgCftekqiknkketkeieeeeeiegfeeLekedqekvrda 81
                    +Ck +kI+kgelR+g+ v+++ ++ ++W+H+gC+t+k i+n+ke+   +e++e++gfe+L++edqe++++a
  CDO71198.1 29 R---SCKgTKIEKGELRFGSLVDFKGNTNFSWRHWGCVTPKIISNMKEKF--DEADELDGFEDLNEEDQERIKKA 98
                3...47779****************************************8..67799****************98 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 2.5e-25
                 EE-S-S--B-SSS--B--SSSEEEEE-...------EEEEHHHHHTSSS--S-GGG.......EETTTTS-HHHHHHHHHH CS
     zf-PARP   1 EyAksgrakCkkCkkkIakgelRlgkkveieeseskrWyHvgCftekqiknkketkeieeeeeiegfeeLekedqekvrda 81 
                 EyA+s+r+kCk C + I+k+  R+g  v+++ ++s +W+H+gC++ek +++ k +   +e ++ieg+eeL++ ++ekv++a
  CDO71198.1 150 EYASSARSKCKVCGEGIGKDFFRIGYEVDFRGNKSYAWRHWGCLDEKLVRKLKASY--DEPSQIEGWEELKEAEKEKVQRA 228
                 9***********************************************99999997..5679****************997 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.5
                 . CS
     zf-PARP  57 e 57 
                 +
  CDO71198.1 319 K 319
                 1 PP

>> DUF2175  Uncharacterized protein conserved in archaea (DUF2175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.12   7.2e+02      27      53 ..      59      86 ..      49     115 .. 0.69
   2 ?    8.2   0.2   0.00049         3       4      73 ..     158     239 ..     155     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
     DUF2175 27 HyeClvekarkklkes.edaaaLlelee 53
                H+ C + k+ +++ke+  +a  L+  e+
  CDO71198.1 59 HWGCVTPKIISNMKEKfDEADELDGFED 86
                9***999999999988755555544433 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00049
     DUF2175   4 kCyiCgkeiveg.....ekFTft.kk..gvvHyeClvekarkklkes....edaaaLleleevlneeivklkelervaedee 73 
                 kC++Cg+ i ++         f  +k  +  H+ Cl ek+ +klk s    ++++   el+e  +e++ ++ e  ++++d++
  CDO71198.1 158 KCKVCGEGIGKDffrigYEVDFRgNKsyAWRHWGCLDEKLVRKLKASydepSQIEGWEELKEAEKEKVQRAWEDGQIPDDDK 239
                 7888887776542111144455544412556************999877777788888888888888888888888877665 PP

>> DUF3280  Protein of unknown function (DUF2380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0013         8     105     127 ..      37      59 ..      34      61 .. 0.92
   2 ?    3.3   0.1     0.017        99     112     127 ..     174     189 ..     165     191 .. 0.90
   3 ?   -3.2   0.4       1.7     1e+04       3      31 ..     335     363 ..     333     370 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
     DUF3280 105 ktgklvaeksvdiRgdtDesWrr 127
                 ++g+l ++  vd++g+t+ sWr+
  CDO71198.1  37 EKGELRFGSLVDFKGNTNFSWRH 59 
                 789999***************98 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.017
     DUF3280 112 eksvdiRgdtDesWrr 127
                 +++vd+Rg++  +Wr+
  CDO71198.1 174 GYEVDFRGNKSYAWRH 189
                 689***********98 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.7
     DUF3280   3 vavldfeliDtsaepadq.taeearRlaav 31 
                 +a  d e iD++ e +++  +++++R a +
  CDO71198.1 335 LAAVDEEEIDEEDEEEPEeAPKKRKR-APA 363
                 67777788888888888744444444.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1635  (0.091193); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.36s 00:00:01.50 Elapsed: 00:00:00.53
# Mc/sec: 2420.95
//
Query:       CDO71199.1  [L=152]
Description: hypothetical protein BN946_scf184845.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-54  181.6  11.0    4.9e-54  181.3  11.0    1.1  1  Ribosomal_S26e  Ribosomal protein S26e
  ------ inclusion threshold ------
      0.021   15.4   0.7       0.82   10.3   0.4    2.2  2  Fer4_7          4Fe-4S dicluster domain
       0.03   14.3   0.1      0.055   13.4   0.1    1.4  1  zf_CopZ         Zinc binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_S26e  Ribosomal protein S26e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3  11.0   8.2e-58   4.9e-54       2     106 ..      28     132 ..      27     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 8.2e-58
                     --S-SSTT----S-S---EEE-TTT--EEES----EEEEEEESS-SSSHHHHTTSBSSSS----EEEEEEE--HHHHHHTTSS----TTTTS--S CS
  Ribosomal_S26e   2 tkKRrnngrnkkgrghvkivrCsncarlvpkdKaikrfvvrniveaaavrdlseasvyeeyalPklYiklaycvscaihskvvrvRsredrknre 96 
                     tkKRrnngrnkkgrghvk+vrCsnc+r+vpkdKaikrf+vrn+ve+aavrd+seasvy+ey++PklYik aycvscaihs+vvrvRsre+r+nr+
      CDO71199.1  28 TKKRRNNGRNKKGRGHVKFVRCSNCSRCVPKDKAIKRFTVRNMVESAAVRDISEASVYQEYVIPKLYIKIAYCVSCAIHSHVVRVRSREGRRNRA 122
                     79********************************************************************************************* PP

                     -S---XXX.. CS
  Ribosomal_S26e  97 ppkrvrkkke 106
                     pp+rvr k+ 
      CDO71199.1 123 PPPRVRWKDG 132
                     ****998875 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00014      0.82      20      45 ..      29      56 ..      16      58 .. 0.60
   2 ?    3.5   0.0     0.019   1.1e+02      27      42 ..      89     104 ..      61     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
      Fer4_7 20 deeenekgt..ekveidpekClgCgaCv 45
                +++ n+ ++   + +++  +C++C +Cv
  CDO71199.1 29 KKRRNNGRNkkGRGHVKFVRCSNCSRCV 56
                3333333332245566788********8 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.019
      Fer4_7  27 gtekveidpekClgCg 42 
                  ++k++i+  +C++C 
  CDO71199.1  89 VIPKLYIKIAYCVSCA 104
                 34888999999*9995 PP

>> zf_CopZ  Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.1e-06     0.055       3      32 ..      51      81 ..      49      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.1e-06
                B-TTT--B-EEE-HHHHHHHB-GGGGGG.-- CS
     zf_CopZ  3 kCPvCgkkGkkVkliTvkhllkpellek.vk 32
                +C +C  k k +k++Tv+++++  ++    +
  CDO71199.1 51 NCSRCVPKDKAIKRFTVRNMVESAAVRDiSE 81
                8*********************999888444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.30s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 998.28
//
Query:       CDO71200.1  [L=320]
Description: hypothetical protein BN946_scf184845.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2084.70
//
Query:       CDO71201.1  [L=1361]
Description: hypothetical protein BN946_scf184845.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00065   19.9   1.0    0.00065   19.9   1.0    2.1  3  YL1          YL1 nuclear protein
      0.006   16.5   0.0      0.015   15.3   0.0    1.7  1  HLH          Helix-loop-helix DNA-binding domain
     0.0086   16.3   3.3     0.0086   16.3   3.3    2.1  2  DUF4611      Domain of unknown function (DUF4611)
  ------ inclusion threshold ------
      0.084   12.8   0.1       0.21   11.5   0.1    1.6  1  F-box-like   F-box-like
        6.1    6.7   8.5        1.1    9.1   4.3    1.7  2  Sigma70_ner  Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       2.1   7.5e+03     114     140 ..     240     269 ..     220     286 .. 0.60
   2 !   19.9   1.0   1.8e-07   0.00065      35     115 ..     390     479 ..     335     535 .. 0.62
   3 ?   -4.7   1.1         5   1.8e+04      71      82 ..     841     853 ..     815     861 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.1
                 x..xxxxx.xxxxxxxxxxxxxxxxxxxxx RF
         YL1 114 p..qakep.rpkkkseraswlpaeslltpk 140
                 +  q+++p +++k+s++as  pa++ +tp 
  CDO71201.1 240 RlkQPSAPaSTSKRSQKASPPPAADAETPV 269
                 243333334777888888888875555555 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.8e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................x RF
         YL1  35 eefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkr.kkekkkrkaqkkkskkkkkkqkkkkkkkidp.................q 115
                 e f +ee++e    +D d   +++de   +e d+++ge e  r+++k++ +k +kk+k     ++  ++k  ++  ++i+p                 +
  CDO71201.1 390 EQFGGEEKDEI---EDDDNGASDDDE---GEGDDSDGEDEEGRARKKAKvAKPPKKEK---PYPRPPTEKPLANPTASIAPspvapstpatmssvfsaE 479
                 56777666544...455565555544...45566678887789999999555555554...44444444455556666666556655555555444430 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 5
                 xxxxxx.xxxxxx RF
         YL1  71 gekele.rqerkk 82 
                  eke++ +qerk+
  CDO71201.1 841 AEKEFQdEQERKE 853
                 3333333333333 PP

>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     4e-06     0.015      33      52 ..     334     353 ..     306     354 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4e-06
                 SS-STHHHHHHHHHHHHHHH CS
         HLH  33 skKlsKaeiLekAveYIkhL 52 
                  +K+sKa iL kA+eYI+ L
  CDO71201.1 334 ARKMSKANILGKATEYIRVL 353
                 57***************977 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.3   2.4e-06    0.0086      16      93 ..     359     440 ..     350     442 .. 0.61
   2 ?   -1.6   0.1      0.92   3.3e+03      36      67 ..     798     830 ..     772     853 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
     DUF4611  16 rvkceapgeadrlksllsgvaqlre...evsellstlveqe.aqddvaaagdeeeegededdeeeekniknktksdePpaKr 93 
                 r+k e+ g  + + +l++g a l+e   e  e ++  ++ e + dd  a++d+e eg+d d e+ee   ++k+k ++Pp K 
  CDO71201.1 359 RLKREKDGLKSLISGLVGGPALLKEwerEWREQFGGEEKDEiEDDDNGASDDDEGEGDDSDGEDEEGRARKKAKVAKPPKKE 440
                 5555555444444444444455555222566667777777755555556666666788888888888888899999999764 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.92
     DUF4611  36 aqlreevsell.stlveqeaqddvaaagdeeee 67 
                 ++lr++ + l+  t+v+ e + ++a++  ++e+
  CDO71201.1 798 ERLRKHAASLFvRTVVRAEDASRKASSAYDSED 830
                 567777766661456666644444433333322 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.7e-05      0.21       6      47 ..     925     964 ..     923     965 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
  F-box-like   6 dEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 +E+Ll+I ++ +p +L++  l Cr  +++   tp+ +  +vl
  CDO71201.1 925 PELLLHIAQFTDPPSLAAFVLACRLINQAL--TPSHYADIVL 964
                 69********9999***************9..99*9999887 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.3    0.0003       1.1       5      61 ..     350     425 ..     348     439 .. 0.60
   2 ?   -1.9   0.1       0.7   2.5e+03       8      75 ..     743     853 ..     741     865 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
  Sigma70_ner   5 iaellelydrveageirLrdiidGflD..................eeeeeeeeeeeedeeeeeee...edddeeeses 61 
                  i+ l +   r+++++  L+ +i+G++                   ee++e e+++  + +++++e   +d+d+e++e 
   CDO71201.1 350 IRVLKKREARLKREKDGLKSLISGLVGgpallkewerewreqfggEEKDEIEDDD--NGASDDDEgegDDSDGEDEEG 425
                  56666777899***********************999988776553333333322..222222222122222222222 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.7
  Sigma70_ner   8 llelydrveageirLrdiidGflD.................................................eeeeeeeeeeeedeeeeeeeeddde 56 
                  +l  ++++  ++++++d  d +l                                                  +    e+++ +++++ ++e+e   e
   CDO71201.1 743 FLRAHEKIVLNNMSVEDAAD-WLAkwrtwhdterkgrctacekrtplgvlaailirerlrkhaaslfvrtvvrA----EDASRKASSAYDSEDECT-E 834
                  55666666666666666666.33334455555555555555555555555566666666655555555443321....222222222222222112.2 PP

  Sigma70_ner  57 eeseseaadeeelkeeale 75 
                    s  +a++e ++++e +e
   CDO71201.1 835 PISLFDAEKEFQDEQERKE 853
                  2223333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.49
# Mc/sec: 8363.19
//
Query:       CDO71202.1  [L=563]
Description: hypothetical protein BN946_scf184845.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-36  124.1   0.2      5e-36  123.3   0.2    1.4  1  Ysc84     Las17-binding protein actin regulator
    8.1e-16   57.4   0.1    1.8e-15   56.3   0.1    1.6  1  SH3_1     SH3 domain
    1.1e-15   57.0   0.2    6.8e-15   54.5   0.1    2.2  2  SH3_2     Variant SH3 domain
    3.7e-12   45.9   0.0    9.1e-12   44.6   0.0    1.7  2  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.2   1.1e-39     5e-36       2     127 ..      88     211 ..      87     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.1e-39
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaak.lkapvysysksrGlyaGvsldgtviterkdaNaafYge 99 
                 g+g+G q+G++++d+++vln+++  ++f++ ++++lGg+ls+a+Gp+g++gea  +++++ + a++ysysk+rGl++Gvs++g+vi+er+daNa+ Y  
  CDO71202.1  88 GLGVGGQAGAEMTDFLVVLNSRA--KSFMSAGSLTLGGNLSIAVGPLGRNGEAIGSLNTSgKVAAMYSYSKTRGLFGGVSIEGSVIVERQDANAQAYRA 184
                 79*******************96..89**9*********************98876665558999*********************************6 PP

       Ysc84 100 kgvsveqILrgevpwpaaakeLlevlka 127
                 + v+v+q+L+g +p+p+ a++L+++l+a
  CDO71202.1 185 D-VTVKQLLSGAIPPPEWASPLIKTLEA 211
                 6.***********************987 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   3.9e-19   1.8e-15       1      48 []     510     557 ..     510     557 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 3.9e-19
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkgrlkgtgkeGliPs 48 
                 iAl+D++a+++++LsfkkG vi+v eks d   Wwkg+++  g+eG +P+
  CDO71202.1 510 IALFDFDAVQPGDLSFKKGQVITVTEKSVDtnTWWKGKVN--GREGVFPA 557
                 7***************************999*********..69*****6 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.25   1.1e+03      43      55 ..      31      43 ..      25      44 .. 0.82
   2 !   54.5   0.1   1.5e-18   6.8e-15       2      57 .]     509     563 .]     508     563 .] 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
                CCCEEEEEGCGEE CS
       SH3_2 43 gGrvGlfPsslve 55
                +G +G++P+s +e
  CDO71202.1 31 NGLDGVIPRSVLE 43
                6889*****9886 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 1.5e-18
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECT..TEEEEEECCCEEEEEGCGEEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsd..gwwegevgGrvGlfPsslveeq 57 
                 ++a++d+++  ++ LsfkkG+vi v+   +k+ d  +ww+g v+Gr G+fP ++ve++
  CDO71202.1 509 AIALFDFDAVQPGDLSFKKGQVITVT---EKSVDtnTWWKGKVNGREGVFPANFVEVV 563
                 689***********************...7766666*******************985 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.1   9.4e+03      36      49 .]      30      43 ..      26      43 .. 0.81
   2 !   44.6   0.0     2e-15   9.1e-12       1      49 []     511     561 ..     511     561 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.1
       SH3_9 36 ltGrtGlvPanyve 49
                ++G  G+ P++ +e
  CDO71202.1 30 NNGLDGVIPRSVLE 43
                68999****99875 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 2e-15
       SH3_9   1 AlypyepreddeLsLqrGDvitviee..sedgWlegsltGrtGlvPanyve 49 
                 Al+++++ ++  Ls+ +G+vitv e+  + + W+ g+ +Gr G++Pan+ve
  CDO71202.1 511 ALFDFDAVQPGDLSFKKGQVITVTEKsvDTNTWWKGKVNGREGVFPANFVE 561
                 8***********************995668********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4031.82
//
Query:       CDO71203.1  [L=110]
Description: hypothetical protein BN946_scf184845.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-52  175.5   7.9    2.7e-52  175.3   7.9    1.0  1  PHF5         PHF5-like protein
  ------ inclusion threshold ------
      0.039   11.8   4.8      0.043   11.7   4.8    1.1  1  PolC_DP2     DNA polymerase II large subunit DP2
       0.36   10.9  15.0        1.3    9.2   1.8    2.9  2  DZR          Double zinc ribbon
        1.4    9.2  17.1       0.29   11.5   2.2    2.6  2  C1_2         C1 domain


Domain annotation for each model (and alignments):
>> PHF5  PHF5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   7.9   6.1e-56   2.7e-52       1     104 []       1     104 [.       1     104 [. 0.99

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 6.1e-56
        PHF5   1 msrhqadlvlcrkqpGtaigklcekcdgkcpicdslvkpatkvricdecsfgkleekciicgskgvsdayyclecvrlekdrdGcpriinvgssktdll 99 
                 ms+h++dl++cr+qpG+aig+lcekcdgkcp+cds+v+p+t vricdec+fg++ ++ciicg+ g+sdayyc+ec+rlekdrdGcp+i+n+g+s+tdl+
  CDO71203.1   1 MSKHHPDLIMCRRQPGIAIGRLCEKCDGKCPVCDSYVRPETLVRICDECNFGTYGGRCIICGAPGISDAYYCAECTRLEKDRDGCPKIVNLGASRTDLF 99 
                 9************************************************************************************************** PP

        PHF5 100 yekkk 104
                 ye+++
  CDO71203.1 100 YERRR 104
                 **985 PP

>> PolC_DP2  DNA polymerase II large subunit DP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.8   9.6e-06     0.043     612     662 ..      37      89 ..      18     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.6e-06
    PolC_DP2 612 ieveiarrkCkkCgketlearCeeCgek.teeklvCkkceeeve.eekcekce 662
                 ++ e   r C++C+  t+  rC  Cg+  ++  ++C +c++ ++ ++ c+k  
  CDO71203.1  37 VRPETLVRICDECNFGTYGGRCIICGAPgISDAYYCAECTRLEKdRDGCPKIV 89 
                 56678899******************98356789******9655488899865 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  13.5    0.0023        10       1      49 []      30      76 ..       5      76 .. 0.81
   2 ?    9.2   1.8   0.00028       1.3       1      19 [.      58      76 ..      58      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0023
         DZR  1 CpqCgeelppda..rfCseCgtklkavaaedrCpsCgekvdpearfCpeCG 49
                Cp C + ++p+   r C+eC+          rC  Cg++  ++a +C eC+
  CDO71203.1 30 CPVCDSYVRPETlvRICDECNFGTY----GGRCIICGAPGISDAYYCAECT 76
                6666666666652247777776666....8********************6 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00028
         DZR  1 CpqCgeelppdarfCseCg 19
                C  Cg++  +da +C eC 
  CDO71203.1 58 CIICGAPGISDAYYCAECT 76
                8889999899999999995 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.3     0.031   1.4e+02      15      40 ..      24      51 ..       2      54 .. 0.73
   2 ?   11.5   2.2   6.6e-05      0.29      19      38 ..      56      75 ..      53      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.031
        C1_2 15 ssesfnCsaCgrkidgff..YsCseCdf 40
                ++ +++C +C+  + ++    +C+eC+f
  CDO71203.1 24 EKCDGKCPVCDSYVRPETlvRICDECNF 51
                455699*******88888889******9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.6e-05
        C1_2 19 fnCsaCgrkidgffYsCseC 38
                ++C +Cg ++ ++ Y+C eC
  CDO71203.1 56 GRCIICGAPGISDAYYCAEC 75
                58*******76788****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 761.14
//
Query:       CDO71204.1  [L=278]
Description: hypothetical protein BN946_scf184845.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-18   64.5   0.0    1.1e-17   64.2   0.0    1.1  1  DDE_Tnp_4    DDE superfamily endonuclease
    2.6e-05   23.9   0.0    6.4e-05   22.7   0.0    1.6  1  DDE_Tnp_1    Transposase DDE domain
     0.0042   16.7   0.1     0.0072   16.0   0.1    1.4  1  Plant_tran   Plant transposon protein
  ------ inclusion threshold ------
      0.031   14.6   0.1       0.14   12.6   0.0    1.9  2  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.4e-21   1.1e-17       2     158 .]      46     205 ..      45     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.4e-21
   DDE_Tnp_4   2 Dgteipiqrpsnleeraqtysnykkkntlkvlivvdpng.kiifvskgypGsvsDkeilensgllkalkeavkpg.dvilaDkgFklsekllvpykk.. 96 
                 Dg++i +  p +   ++++  n+k+  + +v ++++ +   +++v  g +Gs++D++++++ + ++       pg  + laD+g+   + llvpy++  
  CDO71204.1  46 DGSHIVTALPLD---ERSASRNRKGGISQNVFATCTLDTlLFTYVLSGIEGSATDSTVFQMARQVDFRV----PGdRYYLADAGYGFVDLLLVPYRGvr 137
                 999*******98...888889************99988625778*******************999944....555*************999***99** PP

   DDE_Tnp_4  97 .......kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                        + + +  ++e+ fn ++a+ r  +Er++g lk+rf ilr   +++ ++   ++  ++c+LhN
  CDO71204.1 138 yhlaewgRAGLKPVNKEELFNLRHAKLRNAIERIFGILKKRFPILRAGCEYD-MKYQVRLPPALCALHN 205
                 *****888888888899***********************************.9999999999999999 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.4e-08   6.4e-05       8     193 ..      44     184 ..      37     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.4e-08
   DDE_Tnp_1   8 ivDattvrvpgtkedarwgykggkykygy..klhiavdtrsglilsvvi.t.pgnvhdskglkqlldelrpr..kgklvlaDaGYa.saelldtleekg 99 
                 + D++++ +  +     ++++++ +k g+  ++ + + + +  +  +v+    g+  ds++++   +++++r   ++++laDaGY+    ll   +  g
  CDO71204.1  44 AADGSHIVTALPL--DERSASRN-RKGGIsqNVFATCTLDTL-LFTYVLsGiEGSATDSTVFQM-ARQVDFRvpGDRYYLADAGYGfVDLLLVPYR--G 135
                 6677777777777..33333323.356666588888888875.566666368**********99.999*****************95533333333..5 PP

   DDE_Tnp_1 100 vdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrl 193
                 v y ++                   + ++   k+++k++ ++ +                           ++lR  iEr+F+ lk +f ++r 
  CDO71204.1 136 VRYHLA-------------------EWGRAGLKPVNKEELFNLR--------------------------HAKLRNAIERIFGILKKRFPILRA 184
                 555554...................5788888888888777666..........................9****************9988875 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.6e-06    0.0072     141     197 ..     152     207 ..     103     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-06
  Plant_tran 141 ekkklfaqkqeaarkdverafGvlqarfkivakparlwekedlakimkaciilhnmi 197
                 +k++lf  +    r  +er fG+l+ rf i+++ +  ++ +   ++  a   lhn i
  CDO71204.1 152 NKEELFNLRHAKLRNAIERIFGILKKRFPILRAGC-EYDMKYQVRLPPALCALHNFI 207
                 6899**************************96554.455555555555666667765 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.1e-05      0.14      19      65 ..     134     181 ..     119     184 .. 0.82
   2 ?   -0.7   0.0      0.41   1.9e+03      29      61 ..     236     268 ..     208     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
  DDE_Tnp_1_2  19 rgIrasipplgrpakn.kaapkkqarederarnvvErsfgwlkrrrsl 65 
                  rg+r + +  gr   +  +++  +  + ++ rn++Er fg lk+r+ +
   CDO71204.1 134 RGVRYHLAEWGRAGLKpVNKEELFNLRHAKLRNAIERIFGILKKRFPI 181
                  56667777777777666677788999999***************9966 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
  DDE_Tnp_1_2  29 grpaknkaapkkqarederarnvvErsfgwlkr 61 
                  + pa + ++ ++ +r+d++a  + E   gwl +
   CDO71204.1 236 EGPATRAERSRADSRRDYIAQTMWESYQGWLRQ 268
                  455555667788888999988888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1941.18
//
Query:       CDO71205.1  [L=347]
Description: hypothetical protein BN946_scf184845.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 2242.27
//
Query:       CDO71206.1  [L=278]
Description: hypothetical protein BN946_scf184863.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-18   64.5   0.0    1.1e-17   64.2   0.0    1.1  1  DDE_Tnp_4    DDE superfamily endonuclease
    2.6e-05   23.9   0.0    6.4e-05   22.7   0.0    1.6  1  DDE_Tnp_1    Transposase DDE domain
     0.0042   16.7   0.1     0.0072   16.0   0.1    1.4  1  Plant_tran   Plant transposon protein
  ------ inclusion threshold ------
      0.031   14.6   0.1       0.14   12.6   0.0    1.9  2  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.4e-21   1.1e-17       2     158 .]      46     205 ..      45     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.4e-21
   DDE_Tnp_4   2 Dgteipiqrpsnleeraqtysnykkkntlkvlivvdpng.kiifvskgypGsvsDkeilensgllkalkeavkpg.dvilaDkgFklsekllvpykk.. 96 
                 Dg++i +  p +   ++++  n+k+  + +v ++++ +   +++v  g +Gs++D++++++ + ++       pg  + laD+g+   + llvpy++  
  CDO71206.1  46 DGSHIVTALPLD---ERSASRNRKGGISQNVFATCTLDTlLFTYVLSGIEGSATDSTVFQMARQVDFRV----PGdRYYLADAGYGFVDLLLVPYRGvr 137
                 999*******98...888889************99988625778*******************999944....555*************999***99** PP

   DDE_Tnp_4  97 .......kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                        + + +  ++e+ fn ++a+ r  +Er++g lk+rf ilr   +++ ++   ++  ++c+LhN
  CDO71206.1 138 yhlaewgRAGLKPVNKEELFNLRHAKLRNAIERIFGILKKRFPILRAGCEYD-MKYQVRLPPALCALHN 205
                 *****888888888899***********************************.9999999999999999 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.4e-08   6.4e-05       8     193 ..      44     184 ..      37     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.4e-08
   DDE_Tnp_1   8 ivDattvrvpgtkedarwgykggkykygy..klhiavdtrsglilsvvi.t.pgnvhdskglkqlldelrpr..kgklvlaDaGYa.saelldtleekg 99 
                 + D++++ +  +     ++++++ +k g+  ++ + + + +  +  +v+    g+  ds++++   +++++r   ++++laDaGY+    ll   +  g
  CDO71206.1  44 AADGSHIVTALPL--DERSASRN-RKGGIsqNVFATCTLDTL-LFTYVLsGiEGSATDSTVFQM-ARQVDFRvpGDRYYLADAGYGfVDLLLVPYR--G 135
                 6677777777777..33333323.356666588888888875.566666368**********99.999*****************95533333333..5 PP

   DDE_Tnp_1 100 vdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrl 193
                 v y ++                   + ++   k+++k++ ++ +                           ++lR  iEr+F+ lk +f ++r 
  CDO71206.1 136 VRYHLA-------------------EWGRAGLKPVNKEELFNLR--------------------------HAKLRNAIERIFGILKKRFPILRA 184
                 555554...................5788888888888777666..........................9****************9988875 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.6e-06    0.0072     141     197 ..     152     207 ..     103     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-06
  Plant_tran 141 ekkklfaqkqeaarkdverafGvlqarfkivakparlwekedlakimkaciilhnmi 197
                 +k++lf  +    r  +er fG+l+ rf i+++ +  ++ +   ++  a   lhn i
  CDO71206.1 152 NKEELFNLRHAKLRNAIERIFGILKKRFPILRAGC-EYDMKYQVRLPPALCALHNFI 207
                 6899**************************96554.455555555555666667765 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.1e-05      0.14      19      65 ..     134     181 ..     119     184 .. 0.82
   2 ?   -0.7   0.0      0.41   1.9e+03      29      61 ..     236     268 ..     208     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
  DDE_Tnp_1_2  19 rgIrasipplgrpakn.kaapkkqarederarnvvErsfgwlkrrrsl 65 
                  rg+r + +  gr   +  +++  +  + ++ rn++Er fg lk+r+ +
   CDO71206.1 134 RGVRYHLAEWGRAGLKpVNKEELFNLRHAKLRNAIERIFGILKKRFPI 181
                  56667777777777666677788999999***************9966 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
  DDE_Tnp_1_2  29 grpaknkaapkkqarederarnvvErsfgwlkr 61 
                  + pa + ++ ++ +r+d++a  + E   gwl +
   CDO71206.1 236 EGPATRAERSRADSRRDYIAQTMWESYQGWLRQ 268
                  455555667788888999988888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1824.46
//
Query:       CDO71207.1  [L=346]
Description: hypothetical protein BN946_scf184863.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00013   22.8   0.1    0.00035   21.5   0.0    1.8  2  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
      0.001   19.4   0.4     0.0027   18.0   0.2    1.7  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.9e-08   0.00035       1      96 []      35     134 ..      35     134 .. 0.78
   2 ?   -3.2   0.0         2   1.8e+04      25      55 ..     296     326 ..     283     337 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.9e-08
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefna..ktgakytkkqlknrlkklrkeyklvkellersg...fsWDpttk.tvtAd 89 
                     +W+ e+ek +v  l ++v ++       +k  +++ +++ ++     g  +t + +kn++ ++++ y ++ +l+++ g   f+W +++   ++ +
      CDO71207.1  35 KWTLEDEKAFVGYLTDHVAERGD---GNYKMTTFNAAAAYLEGrrTAGGPKTGTGCKNKWARIKETYMVCYKLKQNHGtsgFTWSEEKGaDIGIE 126
                     6****************987555...6788888888888888754667889999*******************986543349**98875246666 PP

  Myb_DNA-bind_3  90 de.vWkey 96 
                     de +W++y
      CDO71207.1 127 DEpIWEAY 134
                     44367776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
  Myb_DNA-bind_3  25 ekktfkkeawkeileefnaktgakytkkqlk 55 
                     e+++++++ + e++e +++  +a  t+  l 
      CDO71207.1 296 EDEELSEDDMVELVEVMRRDISAADTYLSLS 326
                     4555555555555555555555555555554 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2     3e-07    0.0027       2      77 ..      34     108 ..      33     119 .. 0.78
   2 ?   -2.3   0.0      0.65   5.8e+03      76      89 ..     144     157 ..     132     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3e-07
                     SSS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHH...C----HHHHHHHHHHHHHHHHCSSSSSS-- CS
  Myb_DNA-bind_4   2 dkWteeetklLieawgerilelrfqergkkrnkklWeevaeamaer...gykrspeqCkeKienLkkrYkkekerekgs 77 
                      kWt e  k+++   +++ + + +++ g+ + + ++ + a+ ++ r   g +++ + Ck+K+  +k +Y  + + +++ 
      CDO71207.1  34 AKWTLEDEKAFVGYLTDH-VAE-RGD-GNYKMT-TFNAAAAYLEGRrtaGGPKTGTGCKNKWARIKETYMVCYKLKQNH 108
                     69***************5.444.466.899999.*********866344668*****************8776644343 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.65
                     ----S---TT-XXX CS
  Myb_DNA-bind_4  76 gsgsswpffeelda 89 
                      +++ wp ++ +d+
      CDO71207.1 144 FKNKGWPLYDAVDR 157
                     35578999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2378.97
//
Query:       CDO71208.1  [L=367]
Description: hypothetical protein BN946_scf184863.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-29  103.2  28.0    1.4e-16   60.3  16.1    2.0  2  AA_permease_2  Amino acid permease
    4.6e-09   35.4  25.0    2.6e-05   23.0   3.3    2.2  2  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3  16.1   1.6e-20   1.4e-16       1     152 [.      99     261 ..      99     265 .. 0.87
   2 !   48.8   4.5     5e-17   4.5e-13     257     357 ..     267     363 ..     261     367 .] 0.86

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.6e-20
  AA_permease_2   1 lsllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpv 91 
                    l+l+  +al++g+ igsgif ++     ++ s+g++l++wv  + ++g ++++  +aEl+s +p +gG+  y+++ +g++v +l+aw++  a  p+
     CDO71208.1  99 LGLVNGIALIVGLQIGSGIFSSPgivvaNTQSVGASLLVWVAAG-VLG-WTGASSFAELGSSIPVNGGAQAYLQYSYGPLVSYLFAWTAISALKPG 192
                    688999*******************8766666777666655554.445.89********777*********************************9 PP

  AA_permease_2  92 lasilsvaasyllnalgpdlqgn..........twltyliaiaililvalinirgikesakiqnilgilki 152
                      +++s+++s ++n l+  ++++          +w+t+l a+a +++v +i++  +  + +++++ +++k 
     CDO71208.1 193 GNAVISLIFSEYINRLF--WHTTrsevspddipQWATKLTAVAAVVVVSIICVATPTLGTRAAVVFTTVKA 261
                    99999998888888775..54456678888999*******************************9999997 PP

  == domain 2  score: 48.8 bits;  conditional E-value: 5e-17
  AA_permease_2 257 gsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnk.fgspiraiiltaivslillllfllassaaynfll 351
                    ++va  f +a++g+++ +++++++a+s++ga+n+ +++ssr+++ ++++g+lP  f + nk  ++p++a++l+a ++ i ++l+ ++    +  l 
     CDO71208.1 267 NTVALDFGRALFGPIGGAVFAAMVAFSCFGALNGSFFTSSRLIYVAGKEGYLPALFGRHNKlLKTPLNAMCLNAALT-ITFILIGGG----FRSLI 357
                    456777899999************************************************659*************9.888888664....67776 PP

  AA_permease_2 352 svsslg 357
                    + ++++
     CDO71208.1 358 NFAVVA 363
                    666654 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2  16.8   6.6e-07     0.006       7     146 ..     109     260 ..     104     266 .. 0.75
   2 !   23.0   3.3   2.9e-09   2.6e-05     286     355 ..     280     350 ..     252     365 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.6e-07
  AA_permease   7 lggviGtglfvglgvvlsqaGplga.llayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqf 103
                  +g  iG g+f + g+v+++   +ga ll+++ agv  +  + s++e+ + +p++gg+++y + + gp +++  ++      i +l  + + a+i + f
   CDO71208.1 109 VGLQIGSGIFSSPGIVVANTQSVGAsLLVWVAAGVLGWTGASSFAELGSSIPVNGGAQAYLQYSYGPLVSYLFAWT----AISALKPG-GNAVISLIF 201
                  4566*****************99999**************************************************....33333333.222233333 PP

  AA_permease 104 welvtdlpkawvt..................gavflvvlliinlvgvkvygeaefilalik 146
                   e++  l+  w t                  ++  +vv++ii+++   +  +a ++++ +k
   CDO71208.1 202 SEYINRLF--WHTtrsevspddipqwatkltAVAAVVVVSIICVATPTLGTRAAVVFTTVK 260
                  44444444..333466666777777777998777788888888877666666666666655 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.9e-09
  AA_permease 286 svlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskr.gvPlraillsmiisllallla 355
                  ++ + +++a++  ++++++n+s +++sR++y   k+g++P+ +++++k  + Pl+a+ l +++   ++l+ 
   CDO71208.1 280 PIGGAVFAAMVAFSCFGALNGSFFTSSRLIYVAGKEGYLPALFGRHNKLlKTPLNAMCLNAALTITFILIG 350
                  56678999****************************************5499**********999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2415.01
//
Query:       CDO71209.1  [L=389]
Description: hypothetical protein BN946_scf184863.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-39  132.8  26.8    6.2e-39  132.8  26.8    3.6  4  DUF2040   Coiled-coil domain-containing protein 55 (DUF2040)


Domain annotation for each model (and alignments):
>> DUF2040  Coiled-coil domain-containing protein 55 (DUF2040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.8  26.8   3.5e-43   6.2e-39       2     118 ..      66     182 ..      65     185 .. 0.97
   2 ?   -1.8   0.1      0.17     3e+03      92     107 ..     192     207 ..     189     220 .. 0.59
   3 ?   -3.8   7.4      0.72   1.3e+04      94     112 ..     325     343 ..     309     352 .. 0.55
   4 ?  -10.8  15.8         1   1.8e+04      35      73 ..     340     380 ..     324     388 .. 0.38

  Alignments for each domain:
  == domain 1  score: 132.8 bits;  conditional E-value: 3.5e-43
     DUF2040   2 kkeaekaleeDpsvydYDevYDslkeakekkkakkkeekkerkpkYienLlkaaekRkrereraeerklqkereaegdefadkekFVTsaYkkkleelk 100
                 kk+ e++++ D++v++YDe++D+++eak+k+k++k++++kerkpkYi+ Ll++a++R+ ++ raee+++q+ere egdef+dke+FVT+aYk+++eel+
  CDO71209.1  66 KKKLEEEQKVDSTVFQYDEIWDKMQEAKQKQKEAKEADAKERKPKYISGLLASAATRRLDHLRAEEKMIQRERELEGDEFKDKEAFVTQAYKEQMEELR 164
                 7899*********************************************************************************************** PP

     DUF2040 101 kleeeekrreeeeekkdv 118
                 ++eeee++reeee+kk++
  CDO71209.1 165 RAEEEERKREEEEQKKKK 182
                 *************99987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.17
     DUF2040  92 Ykkkleelkkleeeek 107
                 Y+k lee ++++e+  
  CDO71209.1 192 YRKLLEESEQQHEQTV 207
                 5666666555555543 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.72
     DUF2040  94 kkleelkkleeeekrreee 112
                 ++lee ++  + ek+r+e+
  CDO71209.1 325 RQLEEEQERLRAEKARQEQ 343
                 3444444444444444444 PP

  == domain 4  score: -10.8 bits;  conditional E-value: 1
     DUF2040  35 kkkeek..kerkpkYienLlkaaekRkrereraeerklqke 73 
                 ++++e+  +    +  e+ +k+a +R  er+r++  +++ke
  CDO71209.1 340 RQEQESlnRVVAKRNTEEAVKSARERYLERKRRRLEEAAKE 380
                 11111110112234444444455555555544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3322  (0.185286); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.50
# Mc/sec: 2318.50
//
Query:       CDO71210.1  [L=133]
Description: hypothetical protein BN946_scf184863.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   41.0   0.1    5.4e-09   35.8   0.1    2.4  2  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
  ------ inclusion threshold ------
       0.11   12.8   0.1        0.3   11.5   0.0    1.7  2  PG_isomerase_N  Phosphoglucose isomerase N-terminal domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1     6e-13   5.4e-09       1      70 []      11      68 ..      11      68 .. 0.92
   2 ?   -3.3   0.0      0.91   8.2e+03      12      25 ..      91     104 ..      90     115 .. 0.67

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 6e-13
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70
                +++g++ ++v+e  + e Fs f+              ++gfafV++ s+ dA++A+++++  +l+gr+++
  CDO71210.1 11 IYIGGIGEEVDEALIIETFSTFEVK------------HRGFAFVTYSSSADAQDAIDNMDLNELNGRVIR 68
                7999999999999999999999866............69****************************996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.91
                 HHHHHHHHHTTSCE CS
       RRM_1  12 eeeLkelFskfGpi 25 
                 ee L ++ ++ G+ 
  CDO71210.1  91 EEWLQKYVKPLGQS 104
                 67777777777765 PP

>> PG_isomerase_N  Phosphoglucose isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.4e-05       0.3      27      82 ..      15      70 ..       5      95 .. 0.87
   2 ?   -0.8   0.0      0.23     2e+03      70      83 ..     101     114 ..      79     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
                    EECCCHHHHHHH-S-.....-SSSEEEEE.EESS-TTCHCCCHHH---TT-EEEEEE CS
  PG_isomerase_N 27 GvGegtlaaeLaetlvaaelteeGtqFvl.esaddlgaAadaaelaevagArvvRvG 82
                    G+Ge    a + et+ + e+ + G  Fv  +s+ d++ A d  +l e  g rv+Rv 
      CDO71210.1 15 GIGEEVDEALIIETFSTFEVKHRGFAFVTySSSADAQDAIDNMDLNELNG-RVIRVN 70
                    89**************************7367789999*********998.788884 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.23
                     H---TT-EEEEEES CS
  PG_isomerase_N  70 laevagArvvRvGf 83 
                     l++ +gA+++R G+
      CDO71210.1 101 LGQSGGAALRREGS 114
                     67889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 941.98
//
Query:       CDO71211.1  [L=247]
Description: hypothetical protein BN946_scf184863.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-20   73.0   0.1    2.1e-20   72.6   0.1    1.2  1  TFIID-18kDa  Transcription initiation factor IID, 18kD subuni
     0.0034   17.7   0.0     0.0054   17.1   0.0    1.3  1  Histone      Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
        2.7    6.7   6.7        3.7    6.3   6.7    1.2  1  Nucleo_P87   Nucleopolyhedrovirus capsid protein P87
          5    6.4   6.6        7.2    5.9   6.6    1.2  1  DUF908       Domain of Unknown Function (DUF908)


Domain annotation for each model (and alignments):
>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   4.6e-24   2.1e-20       2      93 .]     146     236 ..     145     236 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 4.6e-24
                  --CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa   2 lfrkelqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRk..DkkKlnRlkellslkellkkakKqfde 93 
                  lf kel+ ++y++Gd+++P +++v+++e+++++y+++++q a   +k++   ++ +EDl  ++ +  D kKl+R++ell+++e +k+a+ qf+e
   CDO71211.1 146 LFTKELRNLMYGFGDDRNPANDAVNVMEEILIEYIVDICQVASAGGKKS---RLSIEDLRRALSRpaDAKKLARMEELLFMQEDIKRARAQFEE 236
                  699******************************************9999...9*******9997666************************997 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0054       8     108 ..      87     188 ..      81     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
                 EEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHH CS
     Histone   8 arkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfe 105
                 ++ ++ +t+p ++++++ ++   +  s+++ + +y  +t +++    +++s +  +++  f + +r+++  +++d    ++av+++ e+l  ++v++ +
  CDO71211.1  87 TTAQTTTTTPTPTPVTATPAvAPAVMSRPSAPSTYTFSTYNRDSAPYSRSSRKGSSYRGLFTKELRNLMYGFGDDRNPANDAVNVMEEILIEYIVDICQ 185
                 44556666777777777777799999999999999999***********************************************************98 PP

                 HHH CS
     Histone 106 eAn 108
                  A+
  CDO71211.1 186 VAS 188
                 775 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.7   0.00083       3.7     307     375 ..      67     130 ..      39     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00083
  Nucleo_P87 307 paperslqsPeqtparrkstkmteeslqsPaqtpawqtpattptretssdteaiksepektleeklrek 375
                 p+++++ ++P +tp    +t+  ++ +++P++tp+ +tpa +p+ +++++ ++     ++t+ +  r+ 
  CDO71211.1  67 PQQQHQQHTPVTTPRPVATTTTAQTTTTTPTPTPVTATPAVAPAVMSRPSAPS-----TYTFSTYNRDS 130
                 4456677899999999999999999********************99955443.....45555544555 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.6    0.0016       7.2     142     195 ..      63     118 ..      56     155 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0016
      DUF908 142 vtYYkkssseeqkaesksskeeaseslissspstPtplrrssklgk.....tssspssp 195
                 ++YY++++ +++++  +++++ a++++ ++ ++tPtp+  +++        +   ps+p
  CDO71211.1  63 YSYYPQQQHQQHTP-VTTPRPVATTTTAQTTTTTPTPTPVTATPAVapavmS--RPSAP 118
                 68***998877655.5566777777777888999999998775543333220..22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1485.86
//
Query:       CDO71212.1  [L=319]
Description: hypothetical protein BN946_scf184863.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.0   0.2    1.9e-14   53.1   0.2    1.5  1  ECR1_N    Exosome complex exonuclease RRP4 N-terminal region
    1.4e-14   54.2   0.1    2.9e-14   53.1   0.1    1.6  1  KH_6      KH domain


Domain annotation for each model (and alignments):
>> ECR1_N  Exosome complex exonuclease RRP4 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.2   2.2e-18   1.9e-14       3      38 .]      48      83 ..      46      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2.2e-18
                -TT-EEEETTTSEE-TTEEEETTEEEESSSEEEEEE CS
      ECR1_N  3 tPGevlttdeefmrGhGTYvrggtiyAsvaGtvevv 38
                +PGe++t++  fmrGhGT+v++ +++AsvaGtve+v
  CDO71212.1 48 VPGEPITSSHAFMRGHGTFVDNEEVIASVAGTVERV 83
                8*********************************97 PP

>> KH_6  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.1   3.2e-18   2.9e-14       1      45 [.     189     230 ..     189     231 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 3.2e-18
        KH_6   1 GmlfeVslslvrRllnhvLeeLgkagpfeiavGlNGriWvksesp 45 
                 G+l++V++ l+rRl++h+ + L+++  +++++GlNG+iWv+++++
  CDO71212.1 189 GQLVSVPPILIRRLKSHF-VALPCG--VDLILGLNGYIWVSKHVK 230
                 99****************.*****7..**************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2296.70
//
Query:       CDO71213.1  [L=531]
Description: hypothetical protein BN946_scf184863.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-33  114.0   1.3    1.7e-32  112.5   0.0    2.3  3  DUF4211      Domain of unknown function (DUF4211)
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.36   10.7   0.0    1.6  1  DUF86        Protein of unknown function DUF86
        2.5    6.1   8.0        4.3    5.3   8.0    1.3  1  DNA_pol_phi  DNA polymerase phi
        9.4    5.8   9.7       0.32   10.5   0.2    2.8  2  CHZ          Histone chaperone domain CHZ


Domain annotation for each model (and alignments):
>> DUF4211  Domain of unknown function (DUF4211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.2   5.5e+03      51      81 ..     192     219 ..     184     229 .. 0.64
   2 !  112.5   0.0   3.8e-36   1.7e-32       1     143 [.     265     400 ..     250     401 .. 0.86
   3 ?   -1.3   0.1      0.47   2.1e+03      15      41 ..     415     445 ..     405     466 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
     DUF4211  51 ldpdfllafeerkd.elylvalkklddevegl 81 
                 ++p     +++r++   ++ +l+kl+++ +g 
  CDO71213.1 192 IEPR----LRTRDKrSAFQKNLEKLKRKKRGE 219
                 4444....334444488888888888886654 PP

  == domain 2  score: 112.5 bits;  conditional E-value: 3.8e-36
     DUF4211   1 dFivededeelgapdeeeeedelplefsskahkdlkehFkdvvewlvsnaldpdfllafeerkd........elylvalkklddevegladslvsssaW 91 
                 +Fived++          +  elp+efs+++++dl +hFk++++++v+  +++      e+r+d        ++++val+  +++++g++dslv+ s W
  CDO71213.1 265 NFIVEDDS---------AAVVELPAEFSMNTYQDLLHHFKIICQLFVHMLVHDP-----EDRSDvatrlqnsQYFSVALQITRRKLTGMRDSLVAGSTW 349
                 34544443.........44488*****************************777.....3455555555577*************************** PP

     DUF4211  92 kpefkkaLearPelditeleaseekkCdAcnrskhpatysvrlsGkpYnkkt 143
                 +p f+kaL+++P+l+i++le +   +C Acn+ ++ +t + rlsG pY+k t
  CDO71213.1 350 RPSFRKALDTYPNLEIHHLEFTV-LGCAACNLGGRKSTLQGRLSGDPYDKLT 400
                 **********************8.*************************977 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.47
     DUF4211  15 deeeeedelplef....sskahkdlkehFkd 41 
                 de+ee+  lp++f    +  ++  ++++F +
  CDO71213.1 415 DEDEESGGLPKQFdlgrFCAKRTRTYHQFTH 445
                 3555667789999666644444466666654 PP

>> DUF86  Protein of unknown function DUF86
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.1e-05      0.36      26      90 ..     286     344 ..     273     347 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT----SSC..HHHHHHHTTSS-HHHHHHHHHHHCCHHHHH CS
       DUF86  26 eydavernlqvigEaaidiakhlakklgikkpgdy..ifeilaekgviaeepeepwrkmiglRNrLv 90 
                 +y  +++ + +i++   ++  h        +p+d   + + l++++ ++   +++ rk++g+R+ Lv
  CDO71213.1 286 TYQDLLHHFKIICQLFVHMLVH--------DPEDRsdVATRLQNSQYFSVALQITRRKLTGMRDSLV 344
                 6777889999999999999999........8888889****************************99 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.0   0.00096       4.3     625     689 ..     192     266 ..     189     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00096
  DNA_pol_phi 625 Learenkegqaelfedededeeddeeeeeeddeededse.eddde...........eesdedeededdedvdeidel 689
                  +e+r   ++++  f  +++ e+ + ++ +e+ ++ ++s+  d+d+            +sde+++d+ dedvde+d++
   CDO71213.1 192 IEPRLRTRDKRSAF--QKNLEKLKRKKRGEAVQSGSESSaADEDDvaaqfagarpgASSDEQSDDDADEDVDEEDNF 266
                  66666666777777..555666666666666666666665555557899999**99999999999999999999944 PP

>> CHZ  Histone chaperone domain CHZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   4.3       1.1   4.8e+03      19      26 ..      45      52 ..      43      53 .. 0.93
   2 ?   10.5   0.2   7.2e-05      0.32       3      33 ..     180     210 ..     178     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
         CHZ 19 RRTRgkti 26
                RRT++++i
  CDO71213.1 45 RRTKRRRI 52
                9*****98 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.2e-05
         CHZ   3 edeLeEIDtsNIIsgGR.RTRgktiDfakaae 33 
                 +d L+EID++ II+  R RTR k+  f+k  e
  CDO71213.1 180 ADLLQEIDEERIIE-PRlRTRDKRSAFQKNLE 210
                 788***********.777*********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 3593.16
//
Query:       CDO71214.1  [L=1657]
Description: hypothetical protein BN946_scf184863.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.56
# Mc/sec: 8872.10
//
Query:       CDO71215.1  [L=1232]
Description: hypothetical protein BN946_scf184863.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-40  138.9   0.0    3.8e-38  131.7   0.0    3.0  1  DNA_methylase  C-5 cytosine-specific DNA methylase
    7.5e-14   51.6   0.0      5e-06   26.4   0.2    2.7  2  BAH            BAH domain
      1e-08   35.4   0.0    1.8e-08   34.5   0.0    1.4  1  DNMT1-RFD      Cytosine specific DNA methyltransferase replic


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   6.4e-42   3.8e-38       3     333 ..     743    1210 ..     741    1212 .. 0.71

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 6.4e-42
                     EEEES-TT-HHHHHHHHTT.-EEEEEEE--TTTHHHHHHH-.............-SEEEES-TTTS-........................... CS
  DNA_methylase    3 fidLfaGiGGfrlgleaag.fecvaaseidkkaaktYeanfk............kvsigDitkidkk........................... 56  
                      +d f G+G+f+l++++ g ++ + a+ei ++aa t+++n +                        +                           
     CDO71215.1  743 AFDPFGGVGAFALAMQELGcVKLTHAVEIAPSAALTLKKNSPettvynqcsnvvF-----------Qyavkshagnlrpgdsathlsdgtplpk 825 
                     567899*************99******************9998555544443330...........2333455556666666699999999985 PP

                     .GS--.-SEEEE---GGGTECTSEE--TTSGGGHHHHHHHHHHHHH--SEEEEEEEGGGGGGCCS...............HHHHHHHHHHHHHT CS
  DNA_methylase   57 .klpediDlLvgGfPCqpfSvaGkqkgfedtrgtLffeiiriikekkPkvfllENVkgLlkhdkg...............ktlkvilekleelG 134 
                        p++iD L++GfPCqp S+    + ++d ++ L+ +    ++  +Pk+ ++ENV+g l+ +                   lk ++ +l  +G
     CDO71215.1  826 pPTPQEIDCLTAGFPCQPHSHLNMFRRANDRKSHLMLNLLSWVDFLQPKYCFFENVRGFLSYNLHarqagryrveggikmGGLKFFVRALLAMG 919 
                     545557*****************************************************99887778899999999998889************ PP

                     EEEEEEEEEGGGTT-SB--EEEEEEEEEGGG----------SS---GGG..............................TSGGGTTS-EE.... CS
  DNA_methylase  135 YevsykllnasdyGvpQnReRvfivgirkdlelnvlvkvkefrfpkkkd.........................leasktlrdlleekse.... 199 
                     Y+v  +ll+a +yG pQ+R R+f+v+ r++l+l    + +  +fp k+                           ++ +++ dl++   +    
     CDO71215.1  920 YQVRSSLLQAGHYGAPQSRVRFFLVAARQGLPLP-DLPQPTHDFPLKDSleikfpngttiqpiltlngtalfkyVSIVDAIGDLPDF--Dwlld 1010
                     *******************************986.6666666666666666999999899999999999987773333334444332..12244 PP

                     .BTTTB--GGGSSSTT-EE--.......S---H...HHTS--.....................B--TTS...-B----S-STT-.......... CS
  DNA_methylase  200 .ldeektalsdklvekeekikkttkaseegypk...elsrnr.....................idkveelkglsatrrksgrge.......... 258 
                      +d  k +  +  + ++ +i+  + +s e +          +                                         +          
     CDO71215.1 1011 rKDPRKFQSCTPACAQNPSIRVLECRSDEPFCGfsgP----SesvpyrynkprtsfqararkrP-------------------Ttdiqhftrtl 1081
                     4555555555555555555555555555544433320....13333222222233333322220...................12233444444 PP

                     ...................................................-B-TTS---EEEETTEEE--T....................TT CS
  DNA_methylase  259 ...................................................klekelaeagklqknkerfkp...................vie 282 
                                                                                            +                   vi+
     CDO71215.1 1082 paatvervvnipltpgadyrqlnsrlwewqnsnptsaiardgfrpglygrlD-------------------QtkwfhttvtnvdpmakqsyVIH 1156
                     4444556666666655555544444333333445555555555555565552...................04444444444444444445*** PP

                     GGG--B-BHHHHHHHHT--TT-----SBH...HHHHHHHTS--HHHHHHHHHHH CS
  DNA_methylase  283 kkriRrLtprEaarlqGfPddfefgskks...aaykqiGnsVpvpvieaiakei 333 
                     ++ +R Lt+rE+ar qGfPd+f f+s ++   ++ + iGn+Vp pv ea+a+e+
     CDO71215.1 1157 PHCKRILTVRELARSQGFPDWFVFHSIDNsvkTLQRHIGNAVPWPVSEALAREL 1210
                     **************************999999999****************997 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   8.3e-10     5e-06       1     121 [.     408     536 ..     408     537 .. 0.80
   2 !   22.3   0.0   1.5e-08   9.1e-05       3     109 ..     582     693 ..     580     695 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.3e-10
                 CEEETTGEEEEEETT.....................STTEEEEEEEEEEEEETTSTCEEEEEEEEEEECGGGSTTTTHCCCTTEEEEEEEEEEEEGGGE CS
         BAH   1 vtyavGdfVyfddts.....................tdepyqirrIeeLkenakneeaeatvlvdwflrpeetksalklrqkrElfltrqseilplaai 78 
                 vty+vGd+++++ +s                      ++ +  ++I  + + ++      +++v+wf +++ t   ++  +++Elfl + ++ + ++++
  CDO71215.1 408 VTYEVGDCIVVEAQSyqgqskpkfprnpdelpenvhIADYCWFAKIIYIDQRKD------KLHVQWFEHGSRT-FLQEICDPQELFLWPTCDNICVKNV 499
                 69****************888888777655443333333355555665555555......56***********.99999999***************** PP

                 EEEEEEEEHHHHCTECCHCHHCSTTEEEEEEEEETTTTEEEE- CS
         BAH  79 rgkcrVvllsdleeaqnylpkklddtFycslvydptaktfkkd 121
                   k++V ++ ++ +         + +++c++vy++t+ +f+++
  CDO71215.1 500 LAKATVHDKPPVDKDLG------PLEYFCRFVYNETDASFVDV 536
                 ******99888776654......667**************986 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.5e-08
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTST.CEEEEEEEEEE........ECGGGSTTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCT CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakne.eaeatvlvdwf........lrpeetksalklrqkrElfltrqseilplaairgkcrVvllsdlee 92 
                 y+ +d+ +f   +   p  i+rI   +  + +     a v+++ +          p  + ++++l+++rEl++t+q+ +++++   + c Vv+ +d+e+
  CDO71215.1 582 YHHDDYALFRVPD--GPGGIGRITSVQFPTAARhAGTAIVEMKLLgrittyvaTLPAGV-ESRRLVHERELYMTAQTTKVDASFLLRPCIVVHPTDVED 677
                 6666666666666..66666666666433333322233333333333345555566666.88899999******************************* PP

                 ECCHCHHCSTTEEEEEE CS
         BAH  93 aqnylpkklddtFycsl 109
                 +++ l+   ++ F++++
  CDO71215.1 678 LDEWLS-MSPNHFFVKY 693
                 *****6.8999999986 PP

>> DNMT1-RFD  Cytosine specific DNA methyltransferase replication foci domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0     3e-12   1.8e-08       4     128 ..      90     221 ..      88     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3e-12
                 S-EEEEEEEEEEETTSBB--STTSTTTTT--E....EEEEEEEETT......----SSTT.SEEEEE....ES-ECEEEEEECSSSSBEEEEEEESS-E CS
   DNMT1-RFD   4 rplrkltdfelydkdgelvslevleieknadi....fisgvvkdids.....edeekkkekgiedkglqiklgpIkeWtisgvdegekalivlsTetad 93 
                 +p+r+ltdf+++d  ++   +++++ +++         +g+v++++       +e+ ++++++e k   +  ++I  +t+++ +  +   +++ T++++
  CDO71215.1  90 KPIRALTDFCVFDPTQQFELISLGLLDEDFTKarhfEAAGAVAPVYLneedaGQEDDLDDEDAERKMQRLRTSAIFRYTLDYTKADD--PVYVETQYSW 186
                 699**********9888777777666643322445266788899999544332334444445555555666666********88554..699******* PP

                 EEE-SB-TTTHHHHHHHHHHHHHHHHHHHHHHHHT CS
   DNMT1-RFD  94 YkLlkPsaeYapiyekviekarlsvevvkfLkrsp 128
                 ++L  Ps+ Y  iy  +++  r+++++v +   +p
  CDO71215.1 187 FELRAPSSLYGRIYRDFYRPHRIAQIIVSTALSDP 221
                 **************************998755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 7345.35
//
Query:       CDO71216.1  [L=404]
Description: hypothetical protein BN946_scf184863.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.0   0.3         11    5.8   0.0    2.3  2  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0   0.00059        11       3      39 ..     252     288 ..     250     301 .. 0.80
   2 ?    5.0   0.1    0.0011        20      71      99 ..     339     366 ..     328     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00059
       DDE_3   3 vfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvn 39 
                 +++DEs f  +++rr+ w  k ++++ +++g++ ++ 
  CDO71216.1 252 WYHDESVFYVHDRRRTRWVHKSEKAVPRAKGEGASLM 288
                 9*******************99997666666655554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0011
       DDE_3  71 lletalqakkivlilDnasiHkseslrel 99 
                 l ++++++   vli Dna +H +++  +l
  CDO71216.1 339 LSRHYPDE-DHVLIFDNAMTHLKRAADAL 366
                 55566666.99**********98887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2691.30
//
Query:       CDO71217.1  [L=913]
Description: hypothetical protein BN946_scf184863.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-15   54.8   0.0    1.6e-14   53.5   0.0    1.7  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
       0.11   13.0   0.8       0.28   11.7   0.8    1.7  1  zf-TAZ         TAZ zinc finger


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.7e-18   1.6e-14       1      84 [.     774     858 ..     774     860 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.7e-18
                    HHHHHHT------TT.....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHH CS
  Dimer_Tnp_hAT   1 eldkyleelpvlrrkek.sefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieq 84 
                    el++y     vl++ e+ ++f++l +w+++ + +P l+k+a d+L +p+ss+ +Er+Fs+++ v + +r+ l+  ++e l  ++ 
     CDO71217.1 774 ELERYENTTVVLPDTEDsEPFSLLRYWQDHAKDFPYLYKVALDILPVPASSVPCERVFSACKDVDTIRRSGLDAAMLEVLQILKF 858
                    7899999988888887799******************************************999999**********99998876 PP

>> zf-TAZ  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   3.1e-05      0.28       4      49 ..     219     266 ..     216     282 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
      zf-TAZ   4 alelllHaskCkeaekee...kCkklpsCkkmkellkHl.ksckkkkeCk 49 
                  l+ll+Ha++C+++   +   +C  l sC+ +k +++ + + c  k++C 
  CDO71217.1 219 DLQLLRHAAHCTQSALGRisfTC-DLWSCRILKGFMAVTlHYCA-KDQCD 266
                 689********9888544999**.5********99986625565.55887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 5382.56
//
Query:       CDO71218.1  [L=316]
Description: hypothetical protein BN946_scf184863.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-91  305.8   0.0    3.4e-91  305.6   0.0    1.0  1  OST3_OST6    OST3 / OST6 family, transporter family
     0.0033   17.4   0.0      0.006   16.6   0.0    1.4  1  Thioredoxin  Thioredoxin
  ------ inclusion threshold ------
      0.028   14.7   0.2      0.028   14.7   0.2    2.4  2  DMT_YdcZ     Putative inner membrane exporter, YdcZ


Domain annotation for each model (and alignments):
>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.6   0.0   5.7e-95   3.4e-91       1     293 []      25     312 ..      25     312 .. 0.96

  Alignments for each domain:
  == domain 1  score: 305.6 bits;  conditional E-value: 5.7e-95
   OST3_OST6   1 eellklakksngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhl 99 
                 e+l kla+++ngvikl++++y+ l++ +r++s  + +Ta++p+++C +C+ef+p f++vak+w+k ++++++++fFa++dfd ++ vFqklgl++aP++
  CDO71218.1  25 EKLVKLAAANNGVIKLDESTYNLLTSPKRNWSASIHFTALDPRRRCGPCKEFDPAFNAVAKAWTKVPQAERDSHFFATADFDSAMTVFQKLGLQTAPVV 123
                 689***************************************************************99******************************* PP

   OST3_OST6 100 llfppkkgpk..esk...kkdtydfsrggfdaealakfisertgvkirikrppnyskiiitallvlllvlllklrrklllkilksktlwavlslliill 193
                  ++p+++gp+  + +    +  ydf  +gfda  la+ +s+ t+v+i++k+p+++++i + a ++l+++  +++  ++l    +s++lwa++++l+ l+
  CDO71218.1 124 HIHPATEGPHrpP-SgrtTPVVYDFA-NGFDAGPLAEQLSQFTPVPIPYKAPFDWARIGTAAGVLLIIASGIRVFLPVL----RSRWLWAAGVVLTSLV 216
                 **********862.24679******7.5********************************9999999999999966666....9*************** PP

   OST3_OST6 194 ftsGymfnqIrgvpfvakdekggisyfaggsqnQfgaEtqivallygllallvilLiklvpriknakvqrvlvivllvlifllfslllslfriKnpgYp 292
                 +tsG+mf +Irg+p ++ ++    +++a+g+qnQfg Etq+v+++ygll++++++L+ + p+++n+ +qr+ +++++++i+++fs+l+slfr+Kn+gYp
  CDO71218.1 217 MTSGFMFVRIRGMPHTGGNG----QWIAPGYQNQFGQETQVVSFIYGLLSAAFLMLTLVTPYQTNPARQRLQIYLWSGVILVMFSVLISLFRVKNRGYP 311
                 *****************996....8************************************************************************** PP

   OST3_OST6 293 y 293
                 +
  CDO71218.1 312 F 312
                 8 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-06     0.006      30      81 ..      70     128 ..      51     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-06
                  SHHHHCHHHHHHHHHHHCTT.......TSEEEEEETTTSHHHHHHTT-SSSSEEEEEET CS
  Thioredoxin  30 CghCkalaPeleklaeelkd.......kvklakvdvdenedlakkyevegiPtlklfkn 81 
                  Cg+Ck++ P ++++a++ ++          +a  d d+  ++ +k++ +  P +++ ++
   CDO71218.1  70 CGPCKEFDPAFNAVAKAWTKvpqaerdSHFFATADFDSAMTVFQKLGLQTAPVVHIHPA 128
                  ************9999999888888877889999*************999999988765 PP

>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   3.8      0.68   4.1e+03      65      86 ..     202     223 ..     177     232 .. 0.58
   2 ?   14.7   0.2   4.7e-06     0.028      32      88 ..     250     307 ..     244     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.68
    DMT_YdcZ  65 pwwallGGllGavfvtlnillv 86 
                   w++ +G++    v+++ +++
  CDO71218.1 202 SRWLWAAGVVLTSLVMTSGFMF 223
                 5688887777777777666655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.7e-06
    DMT_YdcZ  32 aAalvsflvGlivllllllllrks.aalaalksvpwwallGGllGavfvtlnillvpk 88 
                 ++ +vsf+ Gl+ +++l+l l ++ ++  a ++++++++ G +l ++ v+++++ v++
  CDO71218.1 250 ETQVVSFIYGLLSAAFLMLTLVTPyQTNPARQRLQIYLWSGVILVMFSVLISLFRVKN 307
                 5789********999888888887677777889*****************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2259.62
//
Query:       CDO71219.1  [L=1715]
Description: hypothetical protein BN946_scf184863.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-99  333.9   0.0    1.5e-99  333.5   0.0    1.2  1  Sec16_C   Sec23-binding domain of Sec16
    3.1e-27   95.5   0.1      2e-26   92.9   0.0    2.6  2  Sec16     Vesicle coat trafficking protein Sec16 mid-region


Domain annotation for each model (and alignments):
>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.5   0.0  1.7e-103   1.5e-99       1     302 []     938    1266 ..     938    1266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 333.5 bits;  conditional E-value: 1.7e-103
                  HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---.---TH.......HHHHHHHHHTTT-HHHHHHHHHH........... CS
     Sec16_C    1 iqalLlrGdrekAlqlAldkklWahAlliasllgkelwkevvqefvrselkegens.......esLrvlyqvfaGnseeavdelvp........... 79  
                  iq+lL +Gdr+ A+++A d+klW+hAl+ias+++ke+wkevv+e +r+el++++++       e+Lrv+y+++ Gn+++av+el++           
  CDO71219.1  938 IQTLLAKGDRRGACHYAADEKLWSHALVIASSIDKETWKEVVTEWIRAELANSKTQgpgdegrEALRVAYSLYGGNGASAVQELLApskllqhpptl 1034
                  89************************************************8333336888999***********************9********** PP

                  ....................-HHHHHHHHHSHHHHHHHHHHTS--HH.HHHHHHHHHHHHHTT-HHHHHHHHHHT-SSS.............BSSTT CS
     Sec16_C   80 .........tsaraslqqaeeskeaeealdkWretvalvlsnrspsd.seaLtalGdlLaskgrveaahicyllalsqtslfggldspsarlvllga 166 
                           t+++++++  ++++ ++++l++W +t+a++lsn+++ d s+aLtalGd+L+++++ eaah+cyll+ +qts++ +l+s+  rl+llg+
  CDO71219.1 1035 qipqpqvsvTPMTPNFPVIQPMNIPQDVLANWAKTAAMLLSNPMTVDsSAALTALGDQLFAHQWPEAAHVCYLLS-PQTSPLATLGSH-PRLTLLGS 1129
                  ********99999**********************************9***************************.9999**999986.89****** PP

                  S--B--SSSTTSHHHHHHHHHHHHHH.HT......TT----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTS-TTSHHHHH.HHHHHHHHH CS
     Sec16_C  167 dhvkfessfakdlesilltEiyEfalslspaak..ekfaglphLlayKllhAavLaelGlvseAqkYcdaiaaslksltkkspylhptlleqlkdLs 261 
                   ++++ +++ kd++ ++++Ei+Efa+sl+++ak  e+faglph+++y+ll+Aa+Lae+G+v++A++Yc+ai+a+   l+++ pyl+ +++eqlk+L+
  CDO71219.1 1130 PSPTALPIYFKDPDPVIFSEIAEFAMSLATPAKgqEAFAGLPHFQPYRLLRAAYLAEMGHVQAANRYCEAITAC---LNRGLPYLNVAFVEQLKSLT 1223
                  ******************************999*9***************************************...89****************** PP

                  HHT-XXX.....XXX....XXXXXXXXXXXXXXXXXXXXXXXX CS
     Sec16_C  262 erLseapkedksssWl..kiskpsldkvwgsleksfnkfvaGd 302 
                  +rL++ap+ +ks+sW+  k++kpsld+++g+le+ ++kf+aG+
  CDO71219.1 1224 DRLTAAPQLEKSGSWIpgKMAKPSLDSIGGWLERGLTKFIAGE 1266
                  *******9999*******************************8 PP

>> Sec16  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.5   1.3e+04      27      57 ..     496     526 ..     483     544 .. 0.75
   2 !   92.9   0.0   2.2e-30     2e-26       1     118 []     728     861 ..     728     861 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
       Sec16  27 svsssksspgevkirslkelvpssedaskfP 57 
                 + ss ++s+ +++++++++l p  ++a+++P
  CDO71219.1 496 ASSSLERSKSPTRASRVTDLSPPPNNATSYP 526
                 4577888999999999999999999888865 PP

  == domain 2  score: 92.9 bits;  conditional E-value: 2.2e-30
       Sec16   1 apvvsFGfGGklvtmfPkrkpsls.gssvsssksspgevkirslkelvpssedask...fPGPl................vkgkskkkevlkwLserie 79 
                 +p++sFGfGGk+vt+f  + +s++ g++v+ s ++++++ki+sl+++vp+s ++++   +PGPl                ++ k+kk++v+k+L+er+e
  CDO71219.1 728 VPIISFGFGGKVVTCF--HGASMNtGFDVALSARQSTDIKIHSLNKIVPESFQDTStatYPGPLfsdpgsptaslvrsgaTQLKTKKARVIKYLEERAE 824
                 69*************9..55666669***********************9999999999********************9999999999********** PP

       Sec16  80 eleaevayaegelesaaarraeekllLlkllkllvehdG 118
                 e++++++y  ++  + +++rae+k++L+ llk +ve+dG
  CDO71219.1 825 EINSGLGY--HRPGTVDRSRAEAKRILVLLLKAMVENDG 861
                 ********..5666679*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.46
# Mc/sec: 11247.83
//
Query:       CDO71220.1  [L=731]
Description: hypothetical protein BN946_scf184863.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-66  214.1   1.4    5.7e-08   32.0   0.1    8.8  9  PUF       Pumilio-family RNA binding repeat
  ------ inclusion threshold ------
       0.08   12.9   0.0         15    5.6   0.0    2.5  2  DUF2141   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.7e-09   1.5e-05       2      35 .]     393     426 ..     392     426 .. 0.92
   2 !   32.0   0.1   6.4e-12   5.7e-08       5      34 ..     433     462 ..     432     463 .. 0.92
   3 !   25.9   0.0   5.6e-10   5.1e-06       2      30 ..     466     495 ..     465     499 .. 0.84
   4 !   24.8   0.0   1.2e-09   1.1e-05       1      29 [.     501     529 ..     501     533 .. 0.87
   5 !   30.5   0.0   1.9e-11   1.7e-07       6      35 .]     541     570 ..     537     570 .. 0.92
   6 !   30.2   0.0   2.5e-11   2.2e-07       2      31 ..     573     602 ..     572     606 .. 0.84
   7 !   12.8   0.0   8.1e-06     0.073       2      29 ..     609     636 ..     608     642 .. 0.80
   8 !   22.9   0.0   5.2e-09   4.7e-05       9      35 .]     659     685 ..     656     685 .. 0.94
   9 ?   -2.0   0.0      0.41   3.7e+03      19      27 ..     709     717 ..     708     718 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.7e-09
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 i g++v+ s dq+G++++Q+ le+a++e+ + i+
  CDO71220.1 393 IFGYIVEFSGDQHGSRFIQQKLETASSEEMEIIF 426
                 789*********************9999988776 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 6.4e-12
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkli 34 
                 + +qL++d +GnyvvQkl+e+ t +qk+++
  CDO71220.1 433 YALQLMQDVFGNYVVQKLFEYGTATQKSRL 462
                 679***********************9987 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 5.6e-10
                 HGGGHHHHHTSTTHHHHHHHHHHH.SCHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh.ateeq 30 
                 ++g ++ Ls   yG++vvQk +eh ++e q
  CDO71220.1 466 MEGQILGLSLQMYGCRVVQKAIEHvLPEQQ 495
                 7899*******************9555554 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 1.2e-09
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehatee 29 
                 ++++n++ +++d +Gn+v+Qkl+eh ++e
  CDO71220.1 501 ELSPNVLRCVKDANGNHVIQKLIEHVPPE 529
                 57999*******************86665 PP

  == domain 5  score: 30.5 bits;  conditional E-value: 1.9e-11
                 HHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQkllehateeqkklil 35 
                 + +Lst++yG++v+Q+++e+ +eeq++ +l
  CDO71220.1 541 VYELSTHPYGCRVLQRCFEYMPEEQTRPLL 570
                 679**********************99875 PP

  == domain 6  score: 30.2 bits;  conditional E-value: 2.5e-11
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqk 31 
                 + +++  L++dq+GnyvvQ +leh ++ ++
  CDO71220.1 573 FHKYVPNLMVDQFGNYVVQFVLEHGKPQDR 602
                 6799*******************8777665 PP

  == domain 7  score: 12.8 bits;  conditional E-value: 8.1e-06
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehatee 29 
                 + g    +++++++++v++k l +a++ 
  CDO71220.1 609 LTGQMYNMAKHKFASNVCEKALMTADPD 636
                 5678889**************9887665 PP

  == domain 8  score: 22.9 bits;  conditional E-value: 5.2e-09
                 HHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   9 LstdqyGnyvvQkllehateeqkklil 35 
                 L++d +Gnyv+Q+ l +a++ qk+l++
  CDO71220.1 659 LMKDSFGNYVLQRALAVADPDQKELLI 685
                 9**********************9985 PP

  == domain 9  score: -2.0 bits;  conditional E-value: 0.41
                 HHHHHHHSC CS
         PUF  19 vQkllehat 27 
                 +++l+e+++
  CDO71220.1 709 IERLIEKCS 717
                 899***987 PP

>> DUF2141  Uncharacterized protein conserved in bacteria (DUF2141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0037        33      28      70 ..     406     447 ..     398     453 .. 0.84
   2 ?    5.6   0.0    0.0016        15      60      87 ..     509     536 ..     488     545 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0037
     DUF2141  28 kkkaikkkvkkaeagkvtvtfenlppGtYAvavfhDengngkl 70 
                  ++ i++k ++a+++++++ f+++ p +YA+++++D  gn  +
  CDO71220.1 406 GSRFIQQKLETASSEEMEIIFDEIVP-QYALQLMQDVFGNYVV 447
                 5677888999999*********9998.7********9888665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0016
     DUF2141  60 vfhDengngkldknllgiPkEgyGfSnn 87 
                 +++D ngn+ ++k    +P E  Gf   
  CDO71220.1 509 CVKDANGNHVIQKLIEHVPPERLGFAAA 536
                 789**********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5309.63
//
Query:       CDO71221.1  [L=109]
Description: hypothetical protein BN946_scf184863.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-28   98.0   0.6    2.9e-28   97.7   0.6    1.1  1  Elf1      Transcription elongation factor Elf1 like
     0.0078   15.9   0.1     0.0081   15.8   0.1    1.1  1  DpnI      Dam-replacing family
  ------ inclusion threshold ------
      0.038   14.5   1.0      0.055   14.0   1.0    1.3  1  zf-CHY    CHY zinc finger


Domain annotation for each model (and alignments):
>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.6   4.8e-32   2.9e-28       1      77 [.       2      79 ..       2      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 4.8e-32
        Elf1  1 gkRkk.kakkrkkkkkkklptkFdCpfCnheksvevkldkkekiaevsCkvCgesfetkvnalsepvDvYskwiDace 77
                gkRkk ++k+   ++k++l+t+F+C+fC+h+ksv+v++d+ke++a++ Ck+C +++++k+n+l+ep+D+Ys+wiDa +
  CDO71221.1  2 GKRKKsSRKPAGPRRKDPLETNFTCLFCHHDKSVSVRIDRKEGVAQLFCKICDQRYQSKANHLTEPIDIYSEWIDAAD 79
                799997666667888889*********************************************************975 PP

>> DpnI  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.4e-06    0.0081      28      70 ..      20      64 ..       5      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.4e-06
                HHHH---TTT--SS-EE-..-------EEE-TTT--EEEEEEEES CS
        DpnI 28 vaknlyCpkCgskklsef..ennkpvaDfyCesckeefeLkskks 70
                +++n+ C  C + k  +   +  + va ++C+ c ++++ k+++ 
  CDO71221.1 20 LETNFTCLFCHHDKSVSVriDRKEGVAQLFCKICDQRYQSKANHL 64
                6789******987655540055567**************998754 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   9.2e-06     0.055      18      52 ..      22      58 ..      16      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.2e-06
      zf-CHY 18 klyaCreCHeele.dhelerl.evkevlcllCeteqe 52
                + ++C  CH++++ + +++r+  v ++ c+ C+++ +
  CDO71221.1 22 TNFTCLFCHHDKSvSVRIDRKeGVAQLFCKICDQRYQ 58
                579******6544366777662688999****98643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 796.46
//
Query:       CDO71222.1  [L=1185]
Description: hypothetical protein BN946_scf184863.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.2e-110  367.8   0.0   3.1e-109  364.9   0.0    2.3  2  Kinesin        Kinesin motor domain
    2.5e-25   89.2   0.0    1.1e-24   87.1   0.0    2.1  2  Microtub_bd    Microtubule binding
    4.4e-05   23.9   0.3    4.4e-05   23.9   0.3    3.5  5  Microtub_bind  Kinesin-associated microtubule-binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.9   0.0  5.2e-113  3.1e-109       1     333 []      87     446 ..      87     446 .. 0.92
   2 ?   -0.6   0.1     0.081   4.8e+02      26     113 ..     924    1028 ..     890    1039 .. 0.70

  Alignments for each domain:
  == domain 1  score: 364.9 bits;  conditional E-value: 5.2e-113
                 EE-SSSHHHHTTTTEBCEEEEC.......TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHH CS
     Kinesin   1 RvRplnekekeeeeeeevevee.......ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTm 92 
                 R+R ++e+e ++++  +v+ +         +++  +++       +++++ Fd vf++ea+q+++y+++++p++e+vl+Gyn+t+faYGqtg+GKT+Tm
  CDO71222.1  87 RCRRRSEREIQDNSPIIVTINGpkgddvtIETSPPTTNLGVVALPTTRTYPFDMVFGPEADQASIYNDVVHPMLEEVLMGYNCTLFAYGQTGTGKTHTM 185
                 788888888888888888776676666644444444444455566899*************************************************** PP

                 TBC........TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTT...................TSTSSEBEEEECTTSCC CS
     Kinesin  93 egk........eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskk...................skkkkklkiredskkge 164
                 +g+        +++++G+ipr+l +lF++++++++    ++svk+sy+E+Ynee++DLL+++                     + + +lk+ +d++k+ 
  CDO71222.1 186 QGDlattpmgnPSAQAGMIPRVLFKLFQHLEATST----DYSVKISYVELYNEELRDLLAPELpapsgsnqpmgmgmgvqrdASAQANLKLFDDANKRG 280
                 **********99999***************98665....59********************999***************998555668*********** PP

                 EEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHH CS
     Kinesin 165 vyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkS 263
                 v+++gl+e+ vk+a+++l ll kg+++r++a+tk+n++SSRSH+vf++t++ +  +++ +   +++klnLvDLAGsE++ ++g ae++r +Ea+ iN+S
  CDO71222.1 281 VIIQGLEETPVKNASDALALLTKGSHRRQIAATKFNDHSSRSHSVFSVTVHTTAASATGDGLLRVGKLNLVDLAGSENIGRSG-AENKRAREAGMINQS 378
                 ******************************************************999988779********************.58999********** PP

                 HHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 264 LlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 Ll+Lgrvi+aL++   s h+pYR+SkLTrlLqdsLgG++kt++i+t+sp+++nleetlstl++a rak+i
  CDO71222.1 379 LLTLGRVINALVDG--SPHVPYRESKLTRLLQDSLGGRTKTCIIATISPARSNLEETLSTLDYAIRAKSI 446
                 **************..****************************************************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.081
                  CEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.....................TTTSBS CS
     Kinesin   26 eeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.....................eeeeeG 101 
                  +++  s++ +++ +e++ +++k+f++e+  ++  +e++ +l ++v +Gy  +      + sG + T+e +                      +++ G
  CDO71222.1  924 STSGFSQELQRTMQESSATYNKAFEREHRAKRARTEATDSLATEVQSGYRYMQ----RSISGTSRTIESTttrvltetsgmseavdnlnaaASSSLG 1016
                  44555667777888888889999999988888888888888888888887543....3445666666655566666666666666666666555666 PP

                  HHHHHHHHHHHH CS
     Kinesin  102 iipraleelFes 113 
                  +i ra+++l e+
  CDO71222.1 1017 VIRRATQDLVEE 1028
                  666666666665 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.8e-28   1.1e-24      16     149 .]      76     240 ..      71     240 .. 0.86
   2 ?   -3.7   0.1       1.7     1e+04      90     124 ..     629     661 ..     624     673 .. 0.55

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.8e-28
                  HHHCTB-EEEEEEECCCS-T........EEEETTT....................TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEE CS
  Microtub_bd  16 qelkGniRvfarvrpelesek.......akikfpe.................eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifa 88 
                   e   niRv  r+r+++e+e        ++i+ p+                     +++++ Fd vf +e+ q+++++++ + +++ +l gyn+++fa
   CDO71222.1  76 SEAETNIRVVIRCRRRSEREIqdnspiiVTINGPKgddvtietsppttnlgvVALPTTRTYPFDMVFGPEADQASIYNDVvHPMLEEVLMGYNCTLFA 173
                  58889**********99998777877663344443555666677788899985567899*******************963789999*********** PP

                  EES.........................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  89 ygqTGsGKtyTmeg.........eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  ygqTG GKt+Tm+g          +++agmipr++ ++f+ ++ +   + +y++++++ve+yne+++DlL
   CDO71222.1 174 YGQTGTGKTHTMQGdlattpmgnPSAQAGMIPRVLFKLFQHLEAT---STDYSVKISYVELYNEELRDLL 240
                  **************99999888767899*******9999999999...78*******************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.7
                  ES................ST-HCHHHHHHHHHHCC CS
  Microtub_bd  90 gqTGsGKtyTmegeeeeagmipraveeifetisel 124
                  ++T s  t Tm +  + ++ ++ a +++ ++ +e+
   CDO71222.1 629 SKTLSSETQTMAT--SVDSFLKLAAQHLHKVRNET 661
                  5666777777776..44444444444444444444 PP

>> Microtub_bind  Kinesin-associated microtubule-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.7   1.6e+04      45      56 ..      45      54 ..      21      89 .. 0.45
   2 ?   -2.3   0.4      0.92   5.5e+03      84     101 ..     505     523 ..     447     553 .. 0.56
   3 ?   -2.4   0.4      0.95   5.7e+03      38      49 ..     666     677 ..     615     721 .. 0.56
   4 ?   -2.7   0.3       1.2   7.2e+03      61      88 ..     942     969 ..     916    1002 .. 0.47
   5 !   23.9   0.3   7.3e-09   4.4e-05       3      92 ..    1031    1120 ..    1030    1132 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.7
  Microtub_bind 45 aaltieeeeevs 56
                   +a+t+  +++vs
     CDO71222.1 45 TATTS--NDRVS 54
                   22222..12222 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.92
  Microtub_bind  84 kcqe.sggvpffqrkkslk 101
                    + qe +++v + q + +  
     CDO71222.1 505 ERQEaTKQVEILQGQMKAV 523
                    2222233333333333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.95
  Microtub_bind  38 qeqeeldaalti 49 
                    +++ e ++a++ 
     CDO71222.1 666 MKELEALSAISN 677
                    222222222222 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.2
  Microtub_bind  61 eeeesietnesla.sekssidenlkcqes 88 
                      +++ e +e  a   ++ + ++l  + +
     CDO71222.1 942 TYNKAFE-REHRAkRARTEATDSLATEVQ 969
                    2222222.111110111222222222223 PP

  == domain 5  score: 23.9 bits;  conditional E-value: 7.3e-09
  Microtub_bind    3 kkdvpTGtTPqRkeylYPrtlvrtepreellerfrqeq.eeldaalti.eeeeevsqdsleeeesietneslasekssidenlkcqesggvp 92  
                     ++d+pTG TP++++    ++l rtepre l++r+rq+  + + +++   e+    ++d+     s++   + +  +s id+ ++ qe++++p
     CDO71222.1 1031 REDMPTGLTPRKRTRKAVEDLPRTEPREVLVRRWRQRGiSSVGSETFLaEHLPLPEEDMGSPSGSAS--PETMAVDSPIDSRVDDQENDSTP 1120
                     68**********************************9977777776663335666778887777766..56666667778899888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1573  (0.087735); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.31s 00:00:01.40 Elapsed: 00:00:00.48
# Mc/sec: 7428.58
//
Query:       CDO71223.1  [L=128]
Description: hypothetical protein BN946_scf184863.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-43  147.6   3.4    1.6e-43  147.4   3.4    1.0  1  Vps55     Vacuolar protein sorting 55
  ------ inclusion threshold ------
        9.7    6.3   7.4         20    5.3   7.4    1.6  1  DUF2933   Protein of unknown function (DUF2933)


Domain annotation for each model (and alignments):
>> Vps55  Vacuolar protein sorting 55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   3.4   1.8e-47   1.6e-43       1     116 [.       6     123 ..       6     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 1.8e-47
       Vps55   1 iillsfvlaiGfllvilsCalyknwwpLlvvlfyllaplPnliakrlsssed..seessalkdlakFltgvlvvsgiaLpivLahagiikwgalilsla 97 
                 +illsfvla+GfllvilsCal+ nw+pLlv+l+++laplPn+++ r+  ++   + ++s  +dl++F+t+ +vv+g+aLp+vLah++ii  ga+++s+a
  CDO71223.1   6 VILLSFVLAVGFLLVILSCALWGNWLPLLVALTFVLAPLPNALFARCGGDDFstEYDGSGPVDLGRFITASVVVTGFALPLVLAHSEIIAPGACAMSIA 104
                 69********************************************8865524425789**************************************** PP

       Vps55  98 ggvviyltiivfflffkee 116
                 gg ++y+ti++++++fkee
  CDO71223.1 105 GGSLVYGTIMAYSATFKEE 123
                 ****************986 PP

>> DUF2933  Protein of unknown function (DUF2933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.4    0.0023        20       2      34 ..      10      42 ..       9      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0023
     DUF2933  2 vllliaaffLltehrahllgllPfllLLlCPlm 34
                 ++l+++f+L+    a +  +lP l+ L+ +l+
  CDO71223.1 10 SFVLAVGFLLVILSCALWGNWLPLLVALTFVLA 42
                699*************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 904.85
//
Query:       CDO71224.1  [L=1330]
Description: hypothetical protein BN946_scf184863.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.8e-184  613.0   0.0   1.2e-140  470.1   0.0    3.8  2  TRAPPC9-Trs120  Transport protein Trs120 or TRAPPC9, TRAPP II


Domain annotation for each model (and alignments):
>> TRAPPC9-Trs120  Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   3.2e-43   5.7e-39       3     313 ..       5     349 ..       3     353 .. 0.80
   2 !  470.1   0.0  6.6e-145  1.2e-140     356    1199 ..     368    1264 ..     365    1292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 3.2e-43
  TRAPPC9-Trs120   3 sfiaParvrvLlvPigkikrsrFlsfverlraenevrLlDvtpdsrpnrnmFsPl.afpnGrilydlstsvpdeehlfLedFEpfRktfvvigia 96 
                      + + a++r+Ll+P+g+i++s+F++ ++ +r+  +v L+D+t d +++r+ F P  +  +G ++  +  + p+++h++L+ F +   +++vigia
      CDO71224.1   5 TYASLAQIRILLLPVGNIRKSTFERWAKDIRSVDSVGLGDITSDVKDERSRFMPNhQLASGYLHLAYPSHPPPDSHTSLSLFRTSDFPLIVIGIA 99 
                     567779************************************************73689************************************ PP

  TRAPPC9-Trs120  97 dgseekdledleqeleelkeky.pka....lvhnlivfdtpee.kaa.lpee...vilvpsseesksttlktimcDitsnlLaeldslaksyqai 181
                      + e+++l+++ +++++  ++  p+     l+ n++vf+++++ +++ l ++   ++++ps+  +k+ +++t+++D++s++L +l+++      +
      CDO71224.1 100 SCGENDSLATILTQFQTSVHEVsPHEsmfpLASNCFVFEESDTtTNInLGNSfpgLVVIPSVMGHKKAYISTLIADLCSKVLVQLANV------M 188
                     ****99999888888875444313322233899********44333336666888****************************99876......4 PP

  TRAPPC9-Trs120 182 ptlrSPgsitgssvlkktl.....qkesrssssdkaqkRlsmpv............asgssstpttfdeisrs...................... 237
                     +tl+SP    g++ l++tl     ++++ ++s d++++R s+p               ++            +                      
      CDO71224.1 189 QTLESPL---GNEYLNATLfpvlpPASELPRSLDDEPRRDSLPLlpshnsqpelstPALRA-----------Ksplglkrnstmspgllpnrhss 269
                     688****...889999999899986677777779999999999976655555444422333...........13444455555577777776555 PP

  TRAPPC9-Trs120 238 ...vagl...gsssasersrqrgkGRqskllGnlyLlAGrypdALkefteaatlakklsDylWlgsALEgilvcllLlaylg 313
                        +       ++  +      ++GR  k+l++++LlAGr+ +A   +tea+ l k  +D  W++sALEg++   ++ ++++
      CDO71224.1 270 lpmS--PalpPKKRPTTIGAASSHGRLFKVLADFFLLAGRLEEASIWYTEAMVLFKGPQDAPWHASALEGLATIPVVEGWAS 349
                     5431..144433333444455689***********************************************99888877765 PP

  == domain 2  score: 470.1 bits;  conditional E-value: 6.6e-145
  TRAPPC9-Trs120  356 ellekilslYers..lndteesvP..qlvysesvlRllkllvavhlrggslndealehiVkgkasepl..........eekeskekprla... 431 
                      + l++++ lY+++  ++++e s+      y+ svlR ++ll ++ +++g +   a + +++  +s p                      a   
      CDO71224.1  368 DKLTQAIALYQKAspTSEPEASLSllAYLYCSSVLRHSTLLYSIWSSKG-WGPLAFTAMIQPGPS-PFlpatlpnnasP--------TSAssa 450 
                      567899******944344444333338889****************888.99*9***99999443.3368666554430........333344 PP

  TRAPPC9-Trs120  432 .............vlfskseIasllfkafplqlkdlslvdqirIlsglAsvlssLgleRKkAfvlrellvslipgleqarkvgaaevgihp.. 509 
                                   + +++++Ia+ l++a  + l  l++ +++r l ++A++++sLg  RK+A vlre+l  ++  ++  r     e g +   
      CDO71224.1  451 rntyaalerltsiTGITRAQIAASLSQAHGPWLLHLDARERVRTLEYMAAMYGSLGHVRKEAYVLREVLGCIMDLIVFGR----DERGTDSar 539 
                      455778888888899******************************************************99999999877....555666644 PP

  TRAPPC9-Trs120  510 ..aAg..................aldlgegdqeesirellellleiYgik.......................eaeveriledaslrsfgwls 559 
                        +A+                   ++ ++++ +esi +l++ ++++ g++                       eae ++ l +++++ fgw++
      CDO71224.1  540 vlSASmtarnsslggsaaqgtvgIRENEKTEGNESILRLVKHVCRVHGVDleavkmvdesvpkrdsqgsqayeEAELDEDLLQSAQEPFGWPE 632 
                      44222566677788888889999999999********************************************8888888888888******* PP

  TRAPPC9-Trs120  560 LqievLrlcinisealpDfegvlkftvllLtryshllpkdeQvrLleniertvaaakklglkelaeYWDpfLvrgvklleeseskipieesks 652 
                      Lqi ++r++i ++ealpD+ +v +f+   L+++ +++++ +Q  L+++ +r++ +ak+ g + +++YW    + ++++l+ +  ++p+e+  s
      CDO71224.1  633 LQIGIIREAIAVAEALPDYPAVAQFSLSSLKQLHPVMSPGDQHHLYNTASRALLTAKRRGDRRVMDYWSGKPIVSIEILPLPLVRVPVEKPLS 725 
                      ************************************************************9999*******999*****************99 PP

  TRAPPC9-Trs120  653 elkkatkeeeks..ekdpfiynPFkkkkkastkakekllvadEkaefkvtLqNPfefeveiesieletegvefealkeslvigpkstqkltlt 743 
                       l++a++ +++    kd f+ynP k    + +     l++   +   + +L  P        s++l+t+gv f++ +  +v++++s + +t+t
      CDO71224.1  726 ILSQAAAGTASVlgVKDLFLYNPRKL--MSGQV---ALFLSISVT--SAMLTSP-------ISLQLSTSGVPFQSKSFPVVVPANSYHPVTIT 804 
                      999998888777889*********99..22222...466654444..4456666.......3799**************************** PP

  TRAPPC9-Trs120  744 gkptesgelkitgckikvlgcrereFpifkkekwkpkkek...........kikrtgl............aakekkserr.......petksl 806 
                      gk+ e g+l i+gc ++  g   reF    + + ++++ +           ++k+ gl            ++       +        ++++l
      CDO71224.1  805 GKASEPGTLVIRGCIVQAPGGAAREFVLPLSTDEEEDRRSrrrstiecevgRFKHAGLdsrpweklskrlST-------QagttaakTTISFL 890 
                      **************************9887775555333356678888888667777766666544443344.......1445555599**** PP

  TRAPPC9-Trs120  807 slkVipeQPelelkstsltqsavMlLeGekktfsitLeNkSstavdflsfsfqDstienlqkalknkelsaaelYelElqllkkkalrilnkd 899 
                      ++kV+peQP+l+++ tslt++avMl++Ge +t++itLeN Ss +vd++ ++f Dsti++ q+al++ els  + Ye E+++++++++++ + +
      CDO71224.1  891 ECKVVPEQPLLRIRRTSLTHGAVMLYNGEMSTIRITLENVSSLPVDLIRLTFDDSTIAPAQQALAEGELSVFDTYETEYDIVHRPVFTWDS-K 982 
                      *******************************************************************************************.6 PP

  TRAPPC9-Trs120  900 eekktikPgeeatfeievlgkkglteatiqidYaylgkksseesekfytrqlsipltvtVnasielvrcdilplsessksasadkqlsell.. 990 
                       e+++i Pg +  ++++++gk g+t++ i++ Y                      + vtV+  +e +++dil  ++ +++ s d++++e+   
      CDO71224.1  983 RESHEILPGHKRVITVNCFGKVGCTSGAIHLSYP---------------------VLVTVYHMLECQGMDILSYTGATTVISVDDDFDEHSpd 1054
                      6789*************************99887.....................89*******************66666777777666666 PP

  TRAPPC9-Trs120  991 ....seeskkekdsdycLlllDlrNsWpnplsvsleveeksedefeveetiepgktsRlilpikrislkeedlhkpIPsLnrnrQFVvsaski 1079
                          ++  +  +  d+c++ +++rN++  p++v++e +++  ++ +  + + pg+tsR+++pik+isl+e+++++pIP L + rQ+Vv +sk+
      CDO71224.1 1055 akarKKLLHVGDIADWCMFSIEVRNTYGLPFEVTFERNQEGVQHASATSLVPPGSTSRIVIPIKKISLSEKHVSRPIPML-SDRQYVVTTSKL 1146
                      676666667789*************************99999**************************************.7*********** PP

  TRAPPC9-Trs120 1080 seeeeramreaFWyReelLkrlkgtWkessskreGeidlRsirltsrmvdalkledieievslekeeee........qtgrskfkvktdeflt 1164
                      ++ eera+re+FWyReel+k ++g+W+e++ +r G ++lR+ r+t  m++al++e  ++ ++l   ++e        +  +skf  +t ef+ 
      CDO71224.1 1147 TPAEERAQRELFWYREELFKVVHGRWRENGGTRAGDLSLRQQRMTLPMLEALRVETARVRMTLVRYDDEgnahavpgDAAGSKFLPTTSEFVY 1239
                      ****************************************************************999999*******99************** PP

  TRAPPC9-Trs120 1165 lkvtitnrsskpispilrllPslnqpanvaldlsr 1199
                      l++++tn s++++ ++l+l+ ++          s 
      CDO71224.1 1240 LRTSVTNLSTSELILTLNLTLEP----------SD 1264
                      ********888886666665333..........33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.56
# Mc/sec: 7166.53
//
Query:       CDO71225.1  [L=1607]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-57  194.3   0.0    4.5e-57  193.7   0.0    1.3  1  GMC_oxred_N     GMC oxidoreductase
    9.2e-37  127.2   0.0    6.6e-36  124.4   0.0    2.0  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    5.7e-34  117.7   0.0    1.4e-33  116.5   0.0    1.7  1  GMC_oxred_C     GMC oxidoreductase
    1.9e-05   24.0   0.0    4.4e-05   22.8   0.0    1.5  1  Thi4            Thi4 family
    6.6e-05   23.1   0.1    0.00022   21.4   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0012   18.5   0.9     0.0027   17.3   0.5    1.8  2  DAO             FAD dependent oxidoreductase
     0.0016   17.5   0.1     0.0027   16.8   0.1    1.3  1  Lycopene_cycl   Lycopene cyclase protein
  ------ inclusion threshold ------
      0.011   14.9   0.2      0.017   14.2   0.2    1.3  1  FAD_binding_2   FAD binding domain
      0.027   13.7   0.1      0.077   12.2   0.0    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
        0.1   12.6   0.2       0.26   11.3   0.2    1.7  1  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.0   2.5e-60   4.5e-57       2     295 ..    1013    1321 ..    1012    1322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 2.5e-60
  GMC_oxred_N    2 delveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalkl.idkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtp 95  
                   d++++ggG+ g ++AaRL+edp+ +v+v+eag +   +  i+  + + ++  + k ++++++ p+k  n+r+++ p+Gk+lGG+s+ N+   +R++
   CDO71225.1 1013 DYVIVGGGTSGLTLAARLTEDPNVQVVVVEAGVHHGPTPeIDIPGYMGRSiANPKFDWTFLSIPQKRANNRAVLQPRGKGLGGSSLNNFLGIFRPS 1108
                   89******************************988666565555555555056689**************************************** PP

  GMC_oxred_N   96 aadldeWeeeaglegwssdevlpafkkvetaqale..............sdlhgvdgrlgvtekgkeesplnkallkaaeelGlp.vprdlngkhq 176 
                   ++ +d  e+  g++gw++d +l ++kk+et q ++                +hg+dg+++  +  +    l   l + ae lG+p  p+  ngk++
   CDO71225.1 1109 KDEIDAIERL-GNPGWNWDSLLCYMKKSETLQLPDltpsdaaayaakpdPIYHGTDGPIKN-SFSPIWADLQLKLFESAEALGIPrNPETGNGKND 1202
                   ******9999.******************999999**********998888*********9.55555555556678999******55566666677 PP

  GMC_oxred_N  177 cGvcllgv.tcrtgarqstarawLrpalerpnleiltgakaekiil..egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlG 269 
                    ++  l      t +r+ +a+a+L+p+l+r+nl++l++a++   +l   g  kra+GVe+ ++++   r+   ++ vv+++G+l++Pq+L++SG+G
   CDO71225.1 1203 GCMTSLVSvDATTAKRSYAASAYLEPNLHRKNLHVLSEAYV---LLepAGDLKRAIGVEYIKDGQR-LRIDNVKRDVVISGGTLQTPQILELSGIG 1294
                   77777766466667777789****************99996...66567789***********999.8999999********************** PP

  GMC_oxred_N  270 kaehLkevgvdvvvdlp.vGknLqdHp 295 
                   +++ L ++g+++++dlp vG+nLqdH+
   CDO71225.1 1295 NRSILLKFGIETILDLPgVGENLQDHV 1321
                   **************************6 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   3.7e-39   6.6e-36       2     244 ..     720     930 ..     719     935 .. 0.93

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 3.7e-39
                     EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCHC CS
  PI3_PI4_kinase   2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkkk 96 
                     +++i+k g+dlrq++l vq+++ +++++++en + +    ++ ++++ +g ++g++e +  + +++s+ + ++      +               
      CDO71225.1 720 VSVIVKTGGDLRQEQLAVQLIQEFEKIWKEENCQCW----VRYFRILITGNSSGLVETITDAVSIHSIKKAEYAR----R--------------- 791
                     5799********************************....*******************************9943....2............... PP

                     CHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSH..HHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS CS
  PI3_PI4_kinase  97 lkkekklkfekrtalkpksgllqeFvkkspsa..eewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpf 189
                                 +     + ll++F+ ++ ++   ++ +a ++F++sla++s ++y+l++ DRh++Nil+ +++g+lihIDfG++l +++ +++f
      CDO71225.1 792 ----------IAEGRFGHVTLLDHFKTTYGDPssAKFVRAQRNFAKSLAGYSLVTYLLQIKDRHNGNILL-DRDGHLIHIDFGFMLSNSPGNIGF 875
                     ..........2334446699********999955799999******************************.***********************9 PP

                     -.SSSSSS-THHHHHHT..STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
  PI3_PI4_kinase 190 pqekvPfrltrelvlai..dpskdeglfresceealealrrdqnlltrllkkavkdg 244
                     +    Pf+l +e+++++   +s  +  fr++  e +ea+r++ + +++ll+++ kd 
      CDO71225.1 876 E--AAPFKLPLEYIEVLggLDSPAYREFRKLFKEGFEAARKHCDRIVTLLELMQKDS 930
                     5..99************9999*******************************98875 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   7.7e-37   1.4e-33       1     144 []    1459    1598 ..    1459    1598 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 7.7e-37
                   ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B CS
  GMC_oxred_C    1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrM 96  
                   P srG+v+++s+dp ++p+idpny+ +++dl  +v+a++ a ++ ++++l  + ++l   +    +da ++ +  l+++v++++  ++Hp+Gt++M
   CDO71225.1 1459 PLSRGTVHIASADPFVPPAIDPNYFANEADLTLVVRAVQVAVRLYKTPPLSNHVKKLLLPP----PDALARGEGGLADYVRDNCGPVYHPVGTAAM 1550
                   78**********************************************9855555555544....5777888888999****************** PP

                   -STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C   97 GadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144 
                    ++++ +VVD++l+v+g++nLrVvD S++P  +++++++ ++a++eka
   CDO71225.1 1551 LPREDGGVVDPTLKVYGTSNLRVVDCSIIPLELSCHTQSIAYAIGEKA 1598
                   **********************************************97 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.5e-08   4.4e-05      16      54 ..    1010    1048 ..    1001    1050 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.5e-08
                  TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4   16 aesDvvivGaGssGLtaayylakkpdlkvailersvspG 54  
                  ++ D vivG+G+sGLt a  l+++p+++v+++e+ v  G
  CDO71225.1 1010 IQPDYVIVGGGTSGLTLAARLTEDPNVQVVVVEAGVHHG 1048
                  67899****************************998776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.2e-07   0.00022       1      31 [.    1016    1047 ..    1016    1050 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-07
                     EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSS CS
  NAD_binding_8    1 IvGaGlsGlvaAylLaka.gfdvlllekrdrl 31  
                     IvG+G sGl++A++L+++ +++v+++e++ + 
     CDO71225.1 1016 IVGGGTSGLTLAARLTEDpNVQVVVVEAGVHH 1047
                     9****************99********98665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.3   5.9e+03      56      79 ..     731     754 ..     694     785 .. 0.71
   2 !   17.3   0.5   1.5e-06    0.0027       1      29 [.    1013    1044 ..    1013    1050 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHHHHHHHHHSSTT CS
         DAO  56 elarlslealeelreleeelgidi 79 
                 ++ +l+ ++++e++++ +e++ ++
  CDO71225.1 731 RQEQLAVQLIQEFEKIWKEENCQC 754
                 445899999999999998888655 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.5e-06
                  EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO    1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29  
                  d vi+GGG  Gl+ A  L++ +   V+++e+g
  CDO71225.1 1013 DYVIVGGGTSGLTLAARLTEDPnvqVVVVEAG 1044
                  89******************988*******98 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.5e-06    0.0027       1      33 [.    1013    1044 ..    1013    1051 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
  Lycopene_cycl    1 DvvviGaGpAglslAarlteakpglkvvlieas 33  
                     D v++G+G  gl lAarl  + p+++vv++ea+
     CDO71225.1 1013 DYVIVGGGTSGLTLAARL-TEDPNVQVVVVEAG 1044
                     789***************.789*********98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   9.8e-06     0.017       1      31 [.    1013    1044 ..    1013    1050 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.8e-06
                     SEEEE--SHHHHHHHHHHHHTTT.-EEEEESS CS
  FAD_binding_2    1 DviViGsGlAGLaAAleaaeaGl.kvavveke 31  
                     D +++G+G +GL+ A++++e    +v+vve +
     CDO71225.1 1013 DYVIVGGGTSGLTLAARLTEDPNvQVVVVEAG 1044
                     88******************8888*****987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.3e-05     0.077       2      42 ..    1013    1051 ..    1012    1082 .. 0.81
   2 ?   -2.6   0.0       1.4   2.5e+03     122     150 ..    1253    1280 ..    1245    1282 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                   SEEEE--SHHHHHHHHHHHH.HTS-EEEEETTHCHHHCSHHH CS
                   xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2    2 dvvviGgGpAGlaaaltlaq.agakvtlvelegtclnggcll 42  
                   d+v++GgG  Gl++a +l +  +++v++v + g +++  + +
   CDO71225.1 1013 DYVIVGGGTSGLTLAARLTEdPNVQVVVV-EAGVHHG--PTP 1051
                   89******************55*******.5554444..444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                   TBEECCSECHHHHHHCCSS-TSEEEEES- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  122 nvgklvrtldsaealklkllpkrivvvGg 150 
                    ++ +v+++++ ++l+ +++++++v+ Gg
   CDO71225.1 1253 RAI-GVEYIKDGQRLRIDNVKRDVVISGG 1280
                   454.45999****************9998 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00015      0.26       1      33 [.    1015    1043 ..    1015    1051 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
  NAD_binding_9    1 aivGaGprGlavlerLlarakkkspleitlfdp 33  
                     +ivG+G +Gl++++rL +      ++++ +++ 
     CDO71225.1 1015 VIVGGGTSGLTLAARLTEDP----NVQVVVVEA 1043
                     7*****************95....999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 10368.95
//
Query:       CDO71226.1  [L=395]
Description: Glycosyltransferase Family 15 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-122  408.7   8.2   2.1e-109  365.7   6.5    2.0  2  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.7   6.5  1.2e-113  2.1e-109      44     292 ..      56     305 ..      22     311 .. 0.95
   2 !   42.9   0.0   2.1e-15   3.7e-11     292     325 .]     323     356 ..     315     356 .. 0.95

  Alignments for each domain:
  == domain 1  score: 365.7 bits;  conditional E-value: 1.2e-113
  Glyco_transf_15  44 vnrgrkPiedenenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeewsyPefideeka 137
                        + + P++ +  nAt+++l+rn +l  +++s+k+ve+rFnk+f+Ypyvf+n+epf+++fke++++l++ +++efg+ipke w  Pe+idee+a
       CDO71226.1  56 YAQPSAPAQGRRANATFVFLARNGDLGGVVTSMKQVEDRFNKEFQYPYVFLNEEPFSDEFKERVQTLTD-SKIEFGLIPKEDWVQPEWIDEERA 148
                      3455567677777*****************************************************999.************************ PP

  Glyco_transf_15 138 akareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkf 229
                      a ar+++ad  ++yg s  yr+mcR++sG+fy+hell+ky+yYwRvePd+ ++cd++yD f  m+d+kk+ygFt+sl+e+  ti+tlWds+k+f
       CDO71226.1 149 AAARKKMADdkVIYGGSVPYRNMCRFNSGFFYRHELLHKYKYYWRVEPDVTFFCDLHYDPFLLMQDQKKVYGFTISLYEYPATIPTLWDSVKEF 242
                      *********9************************************************************************************ PP

  Glyco_transf_15 230 lkenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYe 292
                      +ken++++e +n+++f+sdd++++yn+C+Fwsnfeigdldf+r+eay+kfF++lD+kGgf+Ye
       CDO71226.1 243 IKENPDLVEPDNAMKFISDDEGNSYNNCHFWSNFEIGDLDFWRGEAYSKFFDFLDKKGGFYYE 305
                      **************************************************************9 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 2.1e-15
  Glyco_transf_15 292 erWgdapvhsiavslllpkdkihffedigyshdp 325
                      +rWgdapvhsi+++l+++kd+ihff+digy h+p
       CDO71226.1 323 QRWGDAPVHSIGAALFAKKDQIHFFNDIGYRHNP 356
                      7******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2899.54
//
Query:       CDO71227.1  [L=312]
Description: hypothetical protein BN946_scf184863.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.7  14.5      0.013   15.5  14.5    1.2  1  TFIIA       Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5  14.5   7.5e-07     0.013     131     246 ..      81     183 ..       6     280 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.5e-07
       TFIIA 131 gvtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqqlekq.qqq.qqqqqqqqqqq.qvqqqqqeesqqa 225
                 gv+  t  + + +v v+a +   + +qp  q                   q ++q+ a  +pqqq ++q q++ q+qq++q+q+q q q ++q++++ +
  CDO71227.1  81 GVKPATGTP-APHVAVTAAVSIPASSQPTPQH------------------QpQSQLPAPHRPQQQPHPQaQSHpQHQQASQTQPQyQHQPSSQHQHRPQ 160
                 222222221.1122222222222222222222..................1112222222222221111111112222222222211111111111111 PP

       TFIIA 226 qqa.sqe.qvagsqvessqtdga 246
                 +q  +++ qv+ +++++   +g+
  CDO71227.1 161 HQRgNNSlQVPIAAPKPIAASGE 183
                 11111222333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2030.20
//
Query:       CDO71228.1  [L=309]
Description: hypothetical protein BN946_scf184863.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1972  (0.109989); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.37s 00:00:01.16 Elapsed: 00:00:00.47
# Mc/sec: 1967.72
//
Query:       CDO71229.1  [L=1106]
Description: hypothetical protein BN946_scf184863.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-88  294.8   1.4    3.1e-87  291.9   0.6    2.6  3  USP7_ICP0_bdg  ICP0-binding domain of Ubiquitin-specific prot
      1e-68  231.1   7.0    9.8e-66  221.4   1.1    3.6  3  USP7_C2        Ubiquitin-specific protease C-terminal
      1e-49  169.3   0.1      2e-49  168.4   0.1    1.5  1  UCH            Ubiquitin carboxyl-terminal hydrolase
    1.1e-21   77.8   0.0    3.3e-21   76.2   0.0    1.9  2  UCH_1          Ubiquitin carboxyl-terminal hydrolase
      2e-07   31.1   0.1    3.5e-06   27.1   0.0    2.9  3  MATH           MATH domain
  ------ inclusion threshold ------
      0.017   14.9   0.5        7.4    6.4   0.0    4.5  5  ubiquitin      Ubiquitin family
      0.036   14.1   0.2       0.13   12.2   0.0    2.1  2  HSDR_N_2       Type I restriction enzyme R protein N terminus


Domain annotation for each model (and alignments):
>> USP7_ICP0_bdg  ICP0-binding domain of Ubiquitin-specific protease 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.9   0.6   1.2e-90   3.1e-87       1     240 []     628     876 ..     628     876 .. 0.94
   2 ?   -0.8   0.0       0.3   7.6e+02      84     120 ..     924     963 ..     920     973 .. 0.77
   3 ?   -1.0   0.0      0.35   8.9e+02      32     105 ..     968    1042 ..     948    1046 .. 0.64

  Alignments for each domain:
  == domain 1  score: 291.9 bits;  conditional E-value: 1.2e-90
  USP7_ICP0_bdg   1 vRlWvmvnrqnkTvRpdqpledeeesktveelreklask.qaelrlylEvled.elppvkkeddillFlKlfdpekqtLsyvghvyvskeskvsdl 94 
                    +RlWv+vnrqnkTvRpd+ ++++e++ tve +r+++a + q++lrlyl+++ d ++ p  +  +i++FlK+fd+ +q+L++vg+vyv+++skvsdl
     CDO71229.1 628 IRLWVLVNRQNKTVRPDTHIPENEPQLTVEAIRNTMAVRqQNDLRLYLDIIPDlSH-PEIPPGSIMIFLKHFDIANQRLTGVGKVYVPRSSKVSDL 722
                    7************************************96377**********6334.455778********************************* PP

  USP7_ICP0_bdg  95 vpeineraglpsdtelllyEEikpnmieilklkqtlkkaelqdGdIicfqkelse.e.....ekdelpdakeyydfllnrveVtFkpk...ekpkd 181
                    +p+iner+++ +dt+l+lyEEikp+mie +k+k t+ ++e+qdGdIicfq + +e e     ++  ++++ +yydfl+nrv++ Fkpk   ++ ++
     CDO71229.1 723 IPIINERMRWTPDTPLKLYEEIKPGMIELMKPKLTFTQSEIQDGDIICFQVDMNEkElhdfeAQGMYSNPVQYYDFLQNRVMILFKPKfeeTDAEH 818
                    **************************************************8877744788889**************************9766779 PP

  USP7_ICP0_bdg 182 eeftleLskkmtYdqlaekvaekLkvdptklrfttvnaasgkpkapikrsnqetlkdil 240
                    +ef+l+Lskk++Yd +++kv+e+L+ dp klrftt++ ++g+pk+++krs ++++++i+
     CDO71229.1 819 PEFHLTLSKKQNYDVMSAKVGERLNWDPIKLRFTTTH-SNGTPKQVLKRSLNQSIQEIM 876
                    **********************************996.6**********7776**9996 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.3
  USP7_ICP0_bdg  84 yvskeskvsdlvpeineraglpsd..telllyEEikpn.m 120
                    +++k+s+v+dl+ e+ ++++l ++   +++++E  k + +
     CDO71229.1 924 LLPKTSSVHDLAIELSKQVKLTPGgtGKIRIFEVSKDGkT 963
                    57899999***********996653369999999887633 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.35
  USP7_ICP0_bdg   32 lreklask.qaelrlylEvled.elppvkkeddillFlKlfdpekqtLsyvg.hvyvskeskvsdlvpeineraglp 105 
                     +++++  +  ++++ly+E++   el    ++ d ++ + +f  e  + ++v  +++v++++k s+  + ++ r+g++
     CDO71229.1  968 TYSEMIGNiPDPVELYAEEIPReEL--EADDADKVISVFHFSKEVSRTHGVPfRFVVKPNEKFSETKKRLQARIGVS 1042
                     3444444435699999999983134..33444555555588888888888853778888999999888888888765 PP

>> USP7_C2  Ubiquitin-specific protease C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.4   0.00026      0.67     115     181 ..     585     651 ..     498     682 .. 0.67
   2 ?    0.5   0.0      0.16   4.2e+02      36      80 ..     710     752 ..     703     797 .. 0.76
   3 !  221.4   1.1   3.8e-69   9.8e-66       2     205 ..     888    1090 ..     887    1091 .. 0.97

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00026
     USP7_C2 115 qvfhFskepskthGiPFlfklkegEtfsetkeRlqkrlgvkdkeFekiKfalvtrsky.kpeyleddd 181
                   ++F++  + + + P  f++ ++E++s+ k+R+ +++++++++   + +   +++++  ++ + +++
  CDO71229.1 585 DLANFDERNWPATDLP-SFRVLKNEPYSTFKSRVAQHFNYPENQIRLWVLVNRQNKTVrPDTHIPENE 651
                 5555555555555666.48999*********************9999988666666642333555544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
     USP7_C2  36 ellvpkngtvkdlleelqkkvklseeeskklrllevsnhkiqkvl 80 
                 +++vp++++v+dl+  + ++++ + +  + l+l+e  +  + +++
  CDO71229.1 710 KVYVPRSSKVSDLIPIINERMRWTPD--TPLKLYEEIKPGMIELM 752
                 589***********999998877655..67777776555555555 PP

  == domain 3  score: 221.4 bits;  conditional E-value: 3.8e-69
     USP7_C2    2 lyYevLsislkElEnkksikvtwlseklkkeeelellvpkngtvkdlleelqkkvklseeeskklrllev.snhkiqkvlkedealeslndsttlra 97  
                  + Ye L++s+ ElE+k+s+kv+w++ + k+e ++ +l+pk+++v+dl  el k+vkl+  +++k+r++ev +++k qk+++ +e + ++ d ++l+a
  CDO71229.1  888 ILYEKLDVSIVELETKRSLKVIWTGIHNKEESTHPFLLPKTSSVHDLAIELSKQVKLTPGGTGKIRIFEVsKDGKTQKEFTYSEMIGNIPDPVELYA 984 
                  68********************************************************************8899*********************** PP

     USP7_C2   98 eeipedeleleedekliqvfhFskepskthGiPFlfklkegEtfsetkeRlqkrlgvkdkeFekiKfalvtrsky.kpeyledddlvlldllskedd 193 
                  eeip +ele++  +k+i+vfhFske+s+thG+PF f++k++E+fsetk+Rlq+r+gv+dk+F+k++fal++ +++ +p+y+ed+d  ++d++ + +d
  CDO71229.1  985 EEIPREELEADDADKVISVFHFSKEVSRTHGVPFRFVVKPNEKFSETKKRLQARIGVSDKDFAKYRFALIQHATFkQPSYIEDED-TIYDHKFAPED 1080
                  **********7778************************************************************77*********.99999998888 PP

     USP7_C2  194 ldlLgLdHpdks 205 
                    +LgLdH+dks
  CDO71229.1 1081 --VLGLDHVDKS 1090
                  ..********97 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4   0.1   7.7e-53     2e-49       1     257 []     205     521 ..     205     521 .. 0.91

  Alignments for each domain:
  == domain 1  score: 168.4 bits;  conditional E-value: 7.7e-53
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfsgykqqD 99 
                 +Gl+N G+tCymns+lQ+Lf ++ +r+ ++++ +++++++++              +  al+++f++l+ ++++ v +++l+k++++ + +  ++ q+D
  CDO71229.1 205 VGLKNQGATCYMNSLLQSLFCTRYFRKAVYQIPTEDDHPTES--------------VPLALQRVFYHLQ-TSDQPVGTTELTKSFGWKSLD--SFLQHD 286
                 69*****************************76555555544..............99***********.589*************98766..99**** PP

                 HHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
         UCH 100 aqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks..................................................... 145
                 +qEf ++l d+l+++++            ++ +  i++lf g++ks                                                     
  CDO71229.1 287 VQEFNRVLQDKLESKMKG-----------TKAEGAIQKLFVGKMKSyikcvnvdfessrieefndiqlnvkgmknlyesfkdyvavetldgenkymaeg 374
                 ******************...........78899***************************************************************** PP

                 ........EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEEEEEECTTTTEEEE CS
                 ........xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 146 ........klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsGslssGHYvayiknekngkWyk 233
                          + ++++P++L+++lkRf+y+ +     K+n++ efp e+dl ++l+e +++  ++ + Y+L++v+vHsG l++GHY+a+ik +++ +W+k
  CDO71229.1 375 yglqeakkGIIFQSFPPVLHLQLKRFEYDIQrdaMVKINDRHEFPFEIDLGEFLDETADR--SQPWVYKLHGVLVHSGDLHGGHYFALIKPDRETRWLK 471
                 *******99*******************6666699******************9955555..578********************************** PP

                 EETTEEEEE-HH........................CCCTT.....CEEEEEE CS
                 xxxxxxxxxxxx........................xxxxx.....xxxxxxx RF
         UCH 234 ydDetvkevkee........................eevls.....sayiLfY 257
                 +dD++v++v++                         +         +ay+L+Y
  CDO71229.1 472 FDDDRVTPVTDRevleenyggeimtnglppmqrnqvR---AmkrftNAYMLVY 521
                 **********878888888888888888777664432...3556999999999 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.3e-24   3.3e-21       1     318 [.     205     475 ..     205     477 .. 0.84
   2 ?   -3.0   0.0       1.7   4.2e+03     171     213 ..     600     648 ..     554     704 .. 0.70

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.3e-24
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssaisls 99 
                 +GL n+ +++Y+NslLQ l+ +  +r+++ +  ++++   +++   l+ +f+ l+++  +++ +++++++++    +++l  +l++  +          
  CDO71229.1 205 VGLKNQGATCYMNSLLQSLFCTRYFRKAVYQIPTEDDHPTESVPLALQRVFYHLQTSD-QPVGTTELTKSFG----WKSLDSFLQH--D---------- 286
                 8*************************9999999899999****************998.9************....6678888776..3.......... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 100 sliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilksslerekttrawCe 198
                   +q+fnr+l d+le++ k tk     +e ai++l+  k+++ i+c +   e+sr + +  ++l+     +  k+ + +f+++++       +++++ e
  CDO71229.1 287 --VQEFNRVLQDKLESKMKGTK-----AEGAIQKLFVGKMKSYIKCVNVDFESSRIEEFNDIQLNV----KGMKNLYESFKDYVAVETLD-GENKYMAE 373
                 ..688************99976.....7899*********************************44....5578899*******988877.67777776 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 199 kCkryqpteqrktvknlPpvLalnakleeee.elelwkt...knwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLv 293
                      q  +++  ++++PpvL l++k++e + +++ + +   ++ +p ei+l    +++    l+e    + ++++  vY+L++v vh gd  + gh+ 
  CDO71229.1 374 G-YGLQEAKKGIIFQSFPPVLHLQLKRFEYDiQRDAMVKindRHEFPFEIDL----GEF----LDE----TADRSQPWVYKLHGVLVHSGDL-HGGHYF 458
                 6.7789999999999***********99554233333333335778888877....332....222....23356789************55.5***** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 294 slvkvaekelerdppesqWylFNDf 318
                 +l+k   ++      e++W++F+D 
  CDO71229.1 459 ALIK---PD-----RETRWLKFDDD 475
                 ****...33.....348*******5 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                 x.....xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 171 e.....kkeakvtfasilkssler.ekttrawCekCkryqpteqrktvk 213
                       k+e+++tf+s +++ ++  e+++r w+   ++ ++++    + 
  CDO71229.1 600 PsfrvlKNEPYSTFKSRVAQHFNYpENQIRLWVLVNRQNKTVRPDTHIP 648
                 0344456778888888888877766888888887766666655555555 PP

>> MATH  MATH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.4e-09   3.5e-06       6     104 ..      56     162 ..      53     170 .. 0.87
   2 ?   -4.0   0.0       6.3   1.6e+04      13      33 ..     612     638 ..     605     654 .. 0.65
   3 ?   -0.4   0.0      0.47   1.2e+03      14      36 ..    1006    1029 ..    1001    1041 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.4e-09
        MATH   6 klkegesrys.kveerfnipWrlkikrkng.......flglyLrcnkeeelerkwsieveftlklvssngks..vkkkdthkfekekgwgwgkfiswdk 94 
                 ++k+ e++++ + +e +++ Wr+ + + ++        +++yL++++ ++++ +w   ++f l + + + ++  + ++ +h+f + ++ +wg f+++++
  CDO71229.1  56 NWKKLEKKLTsPEFECGGHRWRILLFPFGNsnappndTVSVYLDYADPKRAPEGWHACAQFALVISNIHDPTiyTVSHAHHRFIA-EECDWG-FTRFSE 152
                 56666677887***************99999999999*********************************9975444555*****.888899.999999 PP

        MATH  95 lekkylvdDs 104
                 l k + v+++
  CDO71229.1 153 LRKLFSVQEG 162
                 9999988765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.3
        MATH  13 rys.kveerfnipWr.....lkikrkn 33 
                 +++ +v ++fn+p +     + ++r+n
  CDO71229.1 612 TFKsRVAQHFNYPENqirlwVLVNRQN 638
                 455578888888744444444455555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.47
        MATH   14 ys.kveerfnipWrlkikrkngfl 36  
                  +s +v   +++p+r+ +k++++f 
  CDO71229.1 1006 FSkEVSRTHGVPFRFVVKPNEKFS 1029
                  566788899**********99864 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       0.3   7.6e+02      18      51 ..     537     576 ..     533     581 .. 0.73
   2 ?    6.4   0.0    0.0029       7.4      13      41 ..     602     630 ..     593     632 .. 0.92
   3 ?   -1.9   0.0       1.2     3e+03      48      67 ..     752     771 ..     750     775 .. 0.83
   4 ?    1.7   0.0     0.086   2.2e+02      11      35 ..    1018    1042 ..    1010    1048 .. 0.85
   5 ?   -4.1   0.0       5.4   1.4e+04      48      65 ..    1065    1082 ..    1065    1083 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.3
                 TSBHHHHHHHHHHHH.T.....SSGGGEEEEETTEEE-TT CS
   ubiquitin  18 sdtveelKekiaeke.g.....ipaeqqrLiysGkvLede 51 
                 +dt ++lK +++e+  +      ++e+q L++  kv+ d+
  CDO71229.1 537 EDTPAHLKRRLEEERlQmeakkREREEQHLYLTAKVITDQ 576
                 5777788888877764455555788899999999988876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0029
                 EEEETTSBHHHHHHHHHHHHTSSGGGEEE CS
   ubiquitin  13 leveesdtveelKekiaekegipaeqqrL 41 
                 ++v +++ ++++K ++a+++++p +q+rL
  CDO71229.1 602 FRVLKNEPYSTFKSRVAQHFNYPENQIRL 630
                 68899999********************9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
                 E-TTSBHGGHTTSTTEEEEE CS
   ubiquitin  48 Ledertleeygiqdgstlhl 67 
                 ++ ++t ++  iqdg++++ 
  CDO71229.1 752 MKPKLTFTQSEIQDGDIICF 771
                 6788999999******9985 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.086
                  EEEEEETTSBHHHHHHHHHHHHTSS CS
   ubiquitin   11 itleveesdtveelKekiaekegip 35  
                  + + v+++++ +e K++++++ g+ 
  CDO71229.1 1018 FRFVVKPNEKFSETKKRLQARIGVS 1042
                  66779****************9986 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 5.4
                  E-TTSBHGGHTTSTTEEE CS
   ubiquitin   48 Ledertleeygiqdgstl 65  
                  +ede t+ +++ +++++l
  CDO71229.1 1065 IEDEDTIYDHKFAPEDVL 1082
                  589999999999988876 PP

>> HSDR_N_2  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   8.1e+03      90     109 ..     322     341 ..     312     342 .. 0.68
   2 ?   12.2   0.0   5.3e-05      0.13      11      66 ..     615     668 ..     611     678 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
    HSDR_N_2  90 ehivykvdkkkkkfeelkdi 109
                  +++++vd ++ ++ee++di
  CDO71229.1 322 YIKCVNVDFESSRIEEFNDI 341
                 45677777777777777766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.3e-05
    HSDR_N_2  11 kyLveelgypkeliavekelqlgskkkraDivvykkdkkpllivecKapsvkisee 66 
                 ++  ++++yp+++i++ + ++ ++k+ r+D+ + +++  p l ve+ +++++++++
  CDO71229.1 615 SRVAQHFNYPENQIRLWVLVNRQNKTVRPDTHIPENE--PQLTVEAIRNTMAVRQQ 668
                 567899***************************9977..************99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7497.95
//
Query:       CDO71230.1  [L=253]
Description: hypothetical protein BN946_scf184863.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-59  199.7   0.0    3.6e-59  199.4   0.0    1.0  1  Sec66     Preprotein translocase subunit Sec66
  ------ inclusion threshold ------
      0.077   13.2   0.0       0.14   12.4   0.0    1.4  1  DUF3216   Protein of unknown function (DUF3216)
       0.16   11.5   0.1        0.6    9.6   0.0    1.8  2  SieB      Super-infection exclusion protein B


Domain annotation for each model (and alignments):
>> Sec66  Preprotein translocase subunit Sec66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4   0.0     6e-63   3.6e-59       2     173 ..       2     168 ..       1     172 [. 0.97

  Alignments for each domain:
  == domain 1  score: 199.4 bits;  conditional E-value: 6e-63
       Sec66   2 vslytPliYvavligslatfsslyrkrkakklaelepwFpenlqrdiYlsllhlekkkeekvpekvlkAALLrravedirrilklreskpalevllqkG 100
                  s+++P++Yv +++gsl++fs++yr+r+a+k++  ep+Fp++++rd+Y+sl ++   +++ +pe++lkAAL+rra+ d+ ri++lre+kpal++llqkG
  CDO71230.1   2 ASVLIPVLYVLIVFGSLLVFSYFYRRRNARKVY--EPYFPPHHERDVYFSLMQM---TDPPAPETLLKAALVRRAMTDVTRIIRLREDKPALQNLLQKG 95 
                 599****************************98..89*****************...5679************************************** PP

       Sec66 101 svgddlwqrfqraekeleeElkdvvqeaealkpgWgqtifqsaneilanealrrrleeiekrkeeekeewekk 173
                 s+gddlw+ ++ aeke+e+E+ +v++ea+a+++gWg +ifq+a e++ ne++r+ +e+i + ++e + ++ k+
  CDO71230.1  96 SIGDDLWNSLLAAEKEMEAEILEVAAEANAYVEGWGSVIFQTATEMMHNEKMRTLIEQIPSIRAEAERKYGKS 168
                 ************************************************************9999999888775 PP

>> DUF3216  Protein of unknown function (DUF3216)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05      0.14      42      89 ..     126     173 ..     100     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHH----XXXXXXX CS
     DUF3216  42 silGfleGlltvlkekydeekvkellekvkakreeleellrkpripll 89 
                  + G+   ++ +  e   +ek+++l+e++ + r+e e ++ k   p l
  CDO71230.1 126 YVEGWGSVIFQTATEMMHNEKMRTLIEQIPSIRAEAERKYGKSALPKL 173
                 45566677888889999************************9999977 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.16   9.7e+02      37      53 ..      10      26 ..       6      36 .. 0.63
   2 ?    9.6   0.0    0.0001       0.6      83     115 ..      65      97 ..      61     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.16
        SieB 37 lvflisiayllaqvvsk 53
                +v++++ ++l+ + +++
  CDO71230.1 10 YVLIVFGSLLVFSYFYR 26
                45566666666555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0001
        SieB  83 kavLreflnqgksvltlplndpavkeLlekgil 115
                  a++r ++ + ++++ l +++pa ++Ll+kg +
  CDO71230.1  65 AALVRRAMTDVTRIIRLREDKPALQNLLQKGSI 97 
                 68999************************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1958.38
//
Query:       CDO71231.1  [L=479]
Description: hypothetical protein BN946_scf184863.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.8e-100  335.9   0.0   3.6e-100  335.5   0.0    1.1  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.5   0.0    2e-104  3.6e-100       1     361 []      84     466 ..      84     466 .. 0.94

  Alignments for each domain:
  == domain 1  score: 335.5 bits;  conditional E-value: 2e-104
                   GGTTEEEEEESSEEEETTTTE..EEETTEEHHHHH.........HHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS- CS
  Citrate_synt   1 glrgvaaleteisevdgekge..lrYRGydieeLa.........eekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdah 86 
                   g+rg++a+++e s +d   ++  +r++G++i + +         +++   e + +lLltg++Pt++e++++++elae+ +lpe + + +++lp+++h
    CDO71231.1  84 GMRGLKAMLWEASVLD---PIegIRFHGLSIAD-CqkvlpaapgGKEIIAESMLWLLLTGKIPTEAETRQLSRELAEKGELPEYIEKLVDSLPSTLH 176
                   89*************9...5567**********.77*******866788999********************************************* PP

                   HHHHHHHHHHHHHHHSTT......CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.S.--.---TTSSHHHHHHHHHHSS---HHHHHHHHHH CS
  Citrate_synt  87 pmavlraavsalsaddee......seakeeseeaalrdalkliAklptiaaaiyrarlg.repl.epddklsyaenflymlrgkkpdeeeaklldla 175
                   pm++l ++v+al++d++       + +k+e++ +al+d+l+l+Aklp++aa+iyr+ ++ ++pl + +++l+++ n+++ml g+  ++++ + l+l+
    CDO71231.1 177 PMTQLGMGVAALNHDSKFqqayerGIKKSEYWTYALEDSLDLLAKLPALAARIYRNIYNpGKPLpKVNKDLDLVGNYVNML-GYGDNHDLTEYLRLY 272
                   ***********8888777666666888888****************************966899889999***********.778899********* PP

                   HHHHS--SS.SHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG........GHHHHHHHHHHTTTS--TTBC-SSSSS- CS
  Citrate_synt 176 lvlhaDHel.naSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaev.......eveeylekvlakekerlpGfGHrvykks 264
                   + +h DHe+ naS+++ ++v+Stlad+y a+aag+ al+Gplhg an++vl++  ++ ++e+        ++e+l+k+l+++ +++pG+GH v+++ 
    CDO71231.1 273 IAIHGDHEGgNASAHTSHLVGSTLADPYLAYAAGLYALAGPLHGLANQEVLRWQMNM-QKELggnitheSIKEFLWKTLKSG-QVVPGYGHGVLRNP 367
                   *********************************************************.66678999**************96.************** PP

                   -HHHHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHH.GCT-EB-THHHHHHHHHHTT--G.GGHHHHHHHHHHHHHHHHHHHHH.HT---- CS
  Citrate_synt 265 DpRakilkelaeelaeekgkdpllklaeeleevapevlkeke.eknlypNvDfysgvlyralgipe.elftvlfaisRvaGwlAhileql.adnkii 358
                   DpR+ +l++++++  e   +dp ++l+++ +evap+vlke+  +kn+ypNvD++sg++++++g+++ +++tv+f++sR++G+l ++++ +     i+
    CDO71231.1 368 DPRFMALQQFCDTRPE-LLEDPIVQLVKKTYEVAPAVLKEHGkTKNPYPNVDAASGCVLYHYGLTQfKYYTVIFGVSRALGCLTQYVWSRaLGLPIE 463
                   ***********99877.59999*****************999**********************99346*******************87555669* PP

                   --E CS
  Citrate_synt 359 RPr 361
                   RP+
    CDO71231.1 464 RPK 466
                   *96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3106.07
//
Query:       CDO71232.1  [L=381]
Description: hypothetical protein BN946_scf184863.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2631.54
//
Query:       CDO71233.1  [L=683]
Description: hypothetical protein BN946_scf184863.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-192  640.0   9.4   1.9e-192  639.8   9.4    1.0  1  B56       Protein phosphatase 2A regulatory B subunit (B56 fa


Domain annotation for each model (and alignments):
>> B56  Protein phosphatase 2A regulatory B subunit (B56 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.8   9.4  1.1e-196  1.9e-192       1     415 []     154     563 ..     154     563 .. 0.99

  Alignments for each domain:
  == domain 1  score: 639.8 bits;  conditional E-value: 1.1e-196
         B56   1 lpslkdvppeereelflkklkqCsvvfdFndpssdlkekeiKretLkelveyvsnnrkkslkilteevyeeivkmisaNlfRplppsksnlldeaadpe 99 
                 lp+++++p++er +lf+kkl+qC vvfdFnd++s+lk k+iK++tL+e+++y+ ++r+    ++tee+y+e+vkm+++NlfR++pp + n++ +a+dpe
  CDO71233.1 154 LPAFNEIPQSERTQLFIKKLHQCAVVFDFNDANSELKGKQIKTQTLHEILDYIMTQRG----VITEEIYPEVVKMFATNLFRSIPP-PVNPTGDAFDPE 247
                 799****************************************************999....***********************7.677766668*** PP

         B56 100 edepvlepawpHlqlvYeillrfvespefdakvakkyidqsFvlkllelfdseDprERdylktilhriygkfldlrsfirkainniflrfiyeterhng 198
                 edepvle awpHl++vYe++lrfvesp+f++++ak+yidq+Fvl+llelfdseDprERd+lkt+lhriygkfl+lr+ ir++inn+f++fiyeterhng
  CDO71233.1 248 EDEPVLELAWPHLKIVYEFFLRFVESPDFSTNLAKRYIDQNFVLNLLELFDSEDPRERDFLKTTLHRIYGKFLNLRAPIRRSINNVFFHFIYETERHNG 346
                 *************************************************************************************************** PP

         B56 199 iaelLeilgsiingfalplkeehkkflervllpLhkvkslslyhqqLaycvvqfiekdpklaeevikgllkyWPitnsqKevlFLneleeileviepee 297
                 iaelLeilgsiingfalplkeehk+fl+rvl+pLhkvksls+yh+qLaycvvqf+ekd++lae v+ gllkyWP+ ns+Kev+FL+e+ee+l+vi+p+e
  CDO71233.1 347 IAELLEILGSIINGFALPLKEEHKTFLMRVLIPLHKVKSLSMYHPQLAYCVVQFLEKDASLAEDVVLGLLKYWPKVNSPKEVMFLSEMEEVLDVIDPAE 445
                 *************************************************************************************************** PP

         B56 298 fqkilkplfkrlakcissphfqVaeralylwnnekivnlisenseeilpilfpaleknskkHWnktvrglalnvlkllmeldpelfdecaakykeekek 396
                 fqki++plf++la+ci+s+hfqVaeral++wnne+ivnl+s+n ++ilpi+fpal++ns++HWn+t++ l++n+lkl+me++p+lfde+ ++yk++k +
  CDO71233.1 446 FQKIQEPLFQQLARCINSQHFQVAERALMYWNNEYIVNLMSDNLSVILPIVFPALYQNSRSHWNRTIHALVYNALKLFMEINPDLFDEVMQQYKQRKIA 544
                 *************************************************************************************************** PP

         B56 397 ekekkkkreekWkkieeaA 415
                 e+e++ +r e+W+k+ e+A
  CDO71233.1 545 EREHAVRRYEEWQKVREKA 563
                 ***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4369.48
//
Query:       CDO71234.1  [L=769]
Description: hypothetical protein BN946_scf184863.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-86  289.2   0.0    4.3e-86  288.6   0.0    1.3  1  DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large s
    2.8e-12   47.2   0.1    1.2e-11   45.1   0.3    2.0  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.6   0.0   4.8e-90   4.3e-86       2     265 ..     181     460 ..     180     461 .. 0.96

  Alignments for each domain:
  == domain 1  score: 288.6 bits;  conditional E-value: 4.8e-90
                      EEEEEHHHHHHHTT-GGS-EETTEEEE-HHHHHHHHHHHHHHHHHH..........HHGGGSSS---HHHHHHHCT--................ CS
  DNA_primase_lrg   2 fykvpfedvldlvkrrrvllkkGyaylpkeeleslllekfrkrlekalestkeslpeleeeikederekleellealsesyvaed......vqe 89 
                      +ykv++++v+dlv++rrv+lk G+ay+p +e+ s++l++f+++lek+le+t+++lp+l    +ed r  + ++l++ls++++a         ++
       CDO71234.1 181 YYKVKWTRVPDLVEKRRVVLKGGMAYVPSSEQASIVLQEFQSHLEKDLEMTAKALPRL----DEDTR--IVPILDNLSKGFLAGVssewsnAST 268
                      8*********************************************************....*****..************9988889998888 PP

                      ...TTSSTTGGSHHHHTT--HHHHCCHHHHCCCSS--CHHHHHHHHHHHHCT--CHHHHCCCHCHST...HHHHHHHTHCHCHHHCC-STT--- CS
  DNA_primase_lrg  90 eedskisaknidklakesfPpCmrelleglkknghlkhegrlqltlFlkdiglsldeilelwkeaftr.teekFdkeyrynirhnyGkegkrtn 182
                      +++++++a+ id++a+++fP Cmr+l++ l++++hlkh grlq++lFlk +gls de+l +w++af++ +++kF+keyrynirh yG egkr+n
       CDO71234.1 269 ASGDALTADMIDEMAYKHFPACMRNLHMCLRRDKHLKHFGRLQYGLFLKVLGLSIDEALVFWRKAFSKiQDDKFNKEYRYNIRHSYGLEGKRAN 362
                      88999999999*********************************************************************************** PP

                      -----HHHHHHS....TT---S-HHHH..HHHHHHHHH.HTT.....HHHHHHHHHHHHTT.HHHHHHHHHHHHHS..........-TTT-SSC CS
  DNA_primase_lrg 183 yspysCekiltkpppgkgdahgCpfrh.dpdklktlLq.eyg...lseediedilesvkegeyqvaCtkvFelthk..........cerdeikh 261
                      y + sC++il +++pg gd+hgCp+rh + d+l+++L   yg   l+++d+ +i++ vk+g+y+vaCt+vFe+th           + +++++h
       CDO71234.1 363 YAAKSCQQILMSDQPGPGDSHGCPYRHfSADNLQSALLtMYGeqgLTSADMPEIMATVKAGHYHVACTRVFEITHArqgvkkgegvGGGESVTH 456
                      ***********************************9996333556***************************************9988889*** PP

                      HHHC CS
  DNA_primase_lrg 262 PlqY 265
                      P+qY
       CDO71234.1 457 PNQY 460
                      **** PP

>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   1.3e+04      48      65 ..      67      83 ..      66      83 .. 0.77
   2 !   45.1   0.3   1.4e-15   1.2e-11       3      66 .]     571     640 ..     570     640 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                     HHHTT---HHHHHHHHHH CS
  CDP-OH_P_transf 48 ARrlnqvstlGkllDsla 65
                     AR + + ++l +++D+++
       CDO71234.1 67 ARNR-TFKELTEVMDPIC 83
                     6777.4477999****99 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 1.4e-15
                      HHHHHHHHHHHHHHHHHGGGS-H..........HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   3 PnaiTllrlllsvlailllltyyp........lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      ++++T+++ +++ l+i++   +++        l+ a+ + l+  l+D+lDGk+AR++n +s +G+ lDslaD
       CDO71234.1 571 ADLVTIANGICGSLSIFMS--AKYlltsdedyLWSALGFPLAGLLFDFLDGKVARWRNESSMIGQELDSLAD 640
                      789*************744..44457*****9999999999****************99777*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5256.11
//
Query:       CDO71235.1  [L=345]
Description: hypothetical protein BN946_scf184863.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-33  113.9   2.3    9.4e-32  110.5   2.3    2.1  1  SMC_Nse1      Nse1 non-SMC component of SMC5-6 complex
    8.8e-11   41.9  11.7    1.5e-10   41.2  11.7    1.4  1  zf-RING-like  RING-like domain
    1.7e-06   28.3  10.5    3.2e-06   27.4  10.5    1.5  1  zf-RING_2     Ring finger domain
     0.0013   18.1   3.5     0.0028   17.1   3.5    1.5  1  Rtf2          Rtf2 RING-finger
     0.0074   16.1  10.5      0.015   15.1  10.5    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.7   4.4      0.022   14.9   4.4    1.4  1  zf-RING_10    zinc RING finger of MSL2
      0.014   15.6   8.6      0.046   14.0   8.7    1.7  2  zf-HC5HC2H    PHD-like zinc-binding domain
      0.041   13.7   9.0      0.067   13.1   9.0    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      0.041   13.6   5.2       0.11   12.3   5.2    1.7  1  zf-RING_11    RING-like zinc finger
      0.099   12.9   6.5       0.25   11.6   6.5    1.7  1  zf-rbx1       RING-H2 zinc finger domain
       0.18   11.9   7.0       0.15   12.3   5.3    1.6  1  zf-HC5HC2H_2  PHD-zinc-finger like domain
       0.32   11.0  13.0       0.57   10.2  13.0    1.4  1  zf-RING_5     zinc-RING finger domain
        0.4   11.4  11.8        1.2    9.8  11.8    1.9  1  FYDLN_acid    Protein of unknown function (FYDLN_acid)
        2.1    8.2  12.8       0.57   10.0   9.7    1.7  2  zf-RING_4     RING/Ubox like zinc-binding domain
        3.4    7.9   8.7         11    6.3   8.7    1.9  1  FANCL_C       FANCL C-terminal domain
        5.5    7.0  10.5         26    4.8  10.7    2.0  2  PHD           PHD-finger
        5.8    6.9  10.3         47    4.0   9.8    2.2  2  Prok-RING_1   Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> SMC_Nse1  Nse1 non-SMC component of SMC5-6 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   2.3   8.9e-35   9.4e-32       1     194 []       8     180 ..       8     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 8.9e-35
    SMC_Nse1   1 nralLQallargilteeelkkvlaailsae...eevsp.....editqedleeyiakinealspldyeirsvrhqlgkervyyalVNttsdeetklATt 91 
                 +r +LQa+l+r il+ + + k+  + + a    +   +      ++ ++  ++++a++n+al+pld+e    +++++ +++ ya+VN + de +++AT+
  CDO71235.1   8 QRLFLQAILSRRILSQKLAAKIWEKCIDAVkeaN---EtleiqYRDDRNSWDTFVANVNDALNPLDLEFAHLHDEVSGKEM-YAVVNRKGDEIAQMATE 102
                 69****************9999988876664442...22335677889999**************************7777.***************** PP

    SMC_Nse1  92 fsaeeiafiKrlldamfet.sntrrlevmaitesqavvlelarilaaaraerrstelsqeeaaadkgLtaseaeklLkrLveegWleksreGfysLdlR 189
                 +++ ei ++K++l++++   +     e  ++++  a  +e++              l+       +++t+s+ae++L+++v+ gWl ksr+G+ysL++R
  CDO71235.1 103 YTPLEITYFKAVLEQIMLApN-----ESYCVSSLAA-LREVNS-------------LK-------SNMTKSQAEATLNSFVARGWLLKSRRGRYSLSTR 175
                 *****************9844.....6689999999.455555.............22.......259******************************* PP

    SMC_Nse1 190 allEL 194
                  +lEL
  CDO71235.1 176 TILEL 180
                 ****8 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  11.7   1.4e-13   1.5e-10       1      43 []     195     235 ..     195     235 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.4e-13
  zf-RING-like   1 CeaCkeivtqGvrCsnesCnvrlHvdCfqhyirthsskkCpkC 43 
                   C++C e+vt+G+ C + +C++r+H +Cf++y   +++++Cp+C
    CDO71235.1 195 CTICMELVTRGIACYTPQCKTRMHTHCFNNYK--RRNRQCPSC 235
                   *******************************9..67778**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4  10.5     3e-09   3.2e-06       2      44 .]     194     236 ..     193     236 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3e-09
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 eC+IC+e ++++  + + +C+  +h +C++++ r++++CP C+
  CDO71235.1 194 ECTICMELVTRGIACYTPQCKTRMHTHCFNNYKRRNRQCPSCK 236
                 8*****9999999999999*999*******************7 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.5   2.6e-06    0.0028     152     240 ..     199     316 ..     119     331 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
        Rtf2 152 v................................ClvCgkeykeedviplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaasksss 218
                 +                                C+ C++++ ++d+  l p +e + +  + l+ ++a++k++ +a+++++++  g+++e+ + +    
  CDO71235.1 199 MelvtrgiacytpqcktrmhthcfnnykrrnrqCPSCKQSWADADINKLRPIGEAAYKEGQDLNRRRARRKSSEDAEDDEDEDGDGEHEEEPQ-EDG-- 294
                 044444444444444444444444444444455***********************************9999998777776655554433333.222.. PP

        Rtf2 219 easesskagkkkekkkekkkrs 240
                 +a+++   + + +k+++ k ++
  CDO71235.1 295 DAQPDVAVKPEPTKQAKGKGKR 316
                 2222222222222222222111 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  10.5   1.4e-05     0.015       1      40 []     194     235 ..     194     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt..pCgHvfCqkCilrsLeekneCPlC 40 
                 +C+iC++    ++     +C+ + +  C+  + +++ +CP C
  CDO71235.1 194 ECTICMELVTRGIACYtpQCKTRMHTHCFNNYKRRNRQCPSC 235
                 6*********98644344*************988888***** PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   4.4   2.1e-05     0.022       1      45 [.     193     237 ..     193     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-05
  zf-RING_10   1 lsCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsqCkd 45 
                 l C++C +L++  ++  +++C+  +   C  + k+ + +C++Ck+
  CDO71235.1 193 LECTICMELVTRGIACYTPQCKTRMHTHCFNNYKRRNRQCPSCKQ 237
                 68*****************************************94 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   8.7   4.4e-05     0.046      30      72 ..     186     228 ..     169     239 .. 0.81
   2 ?   -0.9   0.2         2   2.1e+03      33      45 ..     226     238 ..     223     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.4e-05
  zf-HC5HC2H  30 ikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagll 72 
                    e++ l+C++C++ v   i C  ++Ck+++H++C  + +  
  CDO71235.1 186 NTYENEILECTICMELVTRGIACYTPQCKTRMHTHCFNNYKRR 228
                 555667799***************************9887655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
  zf-HC5HC2H  33 erkklkCylCkkk 45 
                 +r++ +C  Ck++
  CDO71235.1 226 KRRNRQCPSCKQS 238
                 688999****986 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   9.0   6.3e-05     0.067       3      47 ..     193     239 ..     191     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-05
                 SB-TTTSSSBS-.EEET..TEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3   3 eeCviClerprn.vvll..pCgHlvlCeeCaekllkrkkkCpiCrrpi 47 
                  eC iC+e     ++++  +C+   +  +C++++++r+++Cp C+++ 
  CDO71235.1 193 LECTICMELVTRgIACYtpQCKTR-MHTHCFNNYKRRNRQCPSCKQSW 239
                 69******7444133333359877.777*****************975 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.2    0.0001      0.11       1      28 [.     194     221 ..     194     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkC 28 
                 eC+IC+e +++g a +++ C+   H +C
  CDO71235.1 194 ECTICMELVTRGIACYTPQCKTRMHTHC 221
                 9*******************95555444 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.5   0.00024      0.25      17      55 .]     198     236 ..     185     236 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
     zf-rbx1  17 ckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 c +  ++ +   + +C+   H+hC +++ +++++CP c+
  CDO71235.1 198 CMELVTRGIACYTPQCKTRMHTHCFNNYKRRNRQCPSCK 236
                 333333336667778***********************6 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.3   0.00014      0.15      52      87 ..     189     224 ..     169     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
  zf-HC5HC2H_2  52 erlkekCllCkkrkGaciqCskkeCktafHvtCala 87 
                   e+  ++C++C +     i C++ +Ckt  H +C  +
    CDO71235.1 189 ENEILECTICMELVTRGIACYTPQCKTRMHTHCFNN 224
                   345689***************************765 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  13.0   0.00054      0.57       1      44 []     194     237 ..     194     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00054
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCrk 44 
                 +C +C+e ++   ++y+ +C+  ++ +C+++++ ++++Cp C++
  CDO71235.1 194 ECTICMELVTRGIACYTPQCKTRMHTHCFNNYKRRNRQCPSCKQ 237
                 6********77777****************************97 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.8    0.0012       1.2      24      99 ..     227     299 ..     210     333 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  FYDLN_acid  24 kdPivcpkcgeefepeevlksraaaaeaeea.kkkkeeeedeedeeeeedvsdedadeeeeedddddvdleeddddd 99 
                 ++   cp+c++++  + + k r   ++a ++ ++ ++++++++++e++ed++ded d e+ee++    + ++d++ d
  CDO71235.1 227 RRNRQCPSCKQSWADADINKLRPIGEAAYKEgQDLNRRRARRKSSEDAEDDEDEDGDGEHEEEP----QEDGDAQPD 299
                 55568*************8888777776666333344444444444444444444444443322....222222223 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.2   7.6e+03      23      35 ..      28      40 ..      28      43 .. 0.70
   2 ?   10.0   9.7   0.00054      0.57       1      47 [.     195     239 ..     195     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.2
   zf-RING_4 23 qiClfCyhrilee 35
                +i+  C + ++e+
  CDO71235.1 28 KIWEKCIDAVKEA 40
                5888898887764 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00054
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCreeY 47 
                 c +C+e +  ++ + +  +C+ ++   C+++ ++  + +CP C++ +
  CDO71235.1 195 CTICMELV-TRGIACYTPQCKTRMHTHCFNNYKR-RNRQCPSCKQSW 239
                 88898877.889999999**************97.6********975 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.7      0.01        11       3      45 ..     193     230 ..     191     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
                 -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH CS
     FANCL_C   3 veCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslk 45 
                 +eC iC+           i+C  ++C+ ++H++C +++ r ++
  CDO71235.1 193 LECTICMELVT-----RGIACYTPQCKTRMHTHCFNNYKRRNR 230
                 58****98776.....5699***************99877665 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2       0.3   3.1e+02       9      23 ..     186     200 ..     184     212 .. 0.78
   2 ?    4.8  10.7     0.025        26       2      51 ..     195     237 ..     194     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.3
                 TSTTSCEEEETTTSC CS
         PHD   9 sdeeeelvqCdgCkr 23 
                 +++e+e++ C  C +
  CDO71235.1 186 NTYENEILECTICME 200
                 567999999999976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.025
                 BTTTTSTTSTTSCEEEET..TTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCd..gCkrwfHqkClkppleseekpegewlCekCke 51 
                 C +C +      + + C   +Ck+ +H+ C +  +++++      +C++Ck+
  CDO71235.1 195 CTICME---LVTRGIACYtpQCKTRMHTHCFNNYKRRNR------QCPSCKQ 237
                 999999...567778895348***********9988333......4999987 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.8     0.044        47       6      53 ..     194     239 ..     188     240 .. 0.82
   2 ?    2.9   0.3     0.098     1e+02       3      17 ..     228     242 ..     226     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.044
  Prok-RING_1   6 kCpvCgkelkeedDiVvC..peCgtpyHraCyekagkCvneelhskgkew 53 
                  +C++C + ++ +   + C  p+C+t  H +C+++  +  n +++s +++w
   CDO71235.1 194 ECTICMELVTRG---IACytPQCKTRMHTHCFNNYKRR-NRQCPSCKQSW 239
                  7****9999999...55655************998876.77777777777 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.098
  Prok-RING_1   3 tgkkCpvCgkelkee 17 
                   + +Cp C++  +++
   CDO71235.1 228 RNRQCPSCKQSWADA 242
                  5789****9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2267.60
//
Query:       CDO71236.1  [L=1096]
Description: hypothetical protein BN946_scf184863.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-36  126.3   0.0      3e-36  124.8   0.0    1.9  1  AAA        ATPase family associated with various cellular act
    2.2e-11   43.4   0.0    5.1e-11   42.2   0.0    1.6  1  AAA_lid_3  AAA+ lid domain
    1.2e-05   25.7   0.0     0.0048   17.3   0.0    3.4  2  AAA_16     AAA ATPase domain
    0.00026   21.3   0.2      0.034   14.4   0.2    2.8  1  AAA_22     AAA domain
    0.00037   20.7   0.0     0.0034   17.6   0.0    2.5  2  AAA_33     AAA domain
     0.0011   19.6   0.1       0.04   14.5   0.0    2.9  3  AAA_18     AAA domain
     0.0016   18.5   0.1     0.0078   16.2   0.1    2.3  1  AAA_5      AAA domain (dynein-related subfamily)
     0.0028   16.7   0.0     0.0048   15.9   0.0    1.2  1  AAA_6      Hydrolytic ATP binding site of dynein motor region
     0.0052   16.8   0.0       0.01   15.8   0.0    1.4  1  TsaE       Threonylcarbamoyl adenosine biosynthesis protein T
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.028   14.1   0.0    1.5  1  RuvB_N     Holliday junction DNA helicase RuvB P-loop domain
      0.016   15.4   0.0        0.2   11.9   0.0    2.6  3  AAA_28     AAA domain
      0.045   13.5   0.0      0.098   12.4   0.0    1.5  1  IstB_IS21  IstB-like ATP binding protein
      0.063   13.1   0.0       0.25   11.1   0.0    2.0  2  AAA_11     AAA domain
      0.071   12.7   1.7        4.3    6.9   0.0    3.8  4  AAA_25     AAA domain
      0.074   12.2   0.0       0.13   11.4   0.0    1.3  1  DUF815     Protein of unknown function (DUF815)
      0.087   12.7   0.0       0.16   11.8   0.0    1.3  1  Rad17      Rad17 P-loop domain
      0.092   12.5   0.0       0.44   10.2   0.0    2.0  1  AAA_24     AAA domain
        0.1   12.9   0.0       0.24   11.8   0.0    1.6  1  AAA_19     AAA domain
       0.13   11.4   0.0       0.23   10.6   0.0    1.3  1  TIP49      TIP49 P-loop domain
       0.18   11.2   0.0        1.8    7.9   0.0    2.5  2  TniB       Bacterial TniB protein
        0.2   12.1   2.7        1.6    9.1   0.0    3.0  3  AAA_17     AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   3.5e-39     3e-36       2     131 ..     730     861 ..     729     862 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 3.5e-39
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 ll+GppGtGKTl+++a+ake+g ++l +s s+++++yvge+ek +r++f+ a++ + p+++fiDE+dal+++r   ++++s  ++ v+ ++++e+dg+k
  CDO71236.1 730 LLFGPPGTGKTLVVRALAKEAGCRMLVVSPSDIMDMYVGEGEKLVRAVFSLARRLS-PCVVFIDELDALFGARlsrESGNSLAHRGVITEFMQEMDGLK 827
                 9******************************************************9.*****************987789999***************9 PP

                 TS.SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA  98 kk.eskvivigatnrpdkldpallrgRfdrkieie 131
                 ++ +s+vivigatnrp +ld+a+l +R+ r++ ++
  CDO71236.1 828 SSkDSNVIVIGATNRPFDLDDAVL-RRLPRRLLVD 861
                 987889******************.7*99998765 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     6e-14   5.1e-11       1      35 [.     907     941 ..     907     949 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 6e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgi 35 
                 dvdlk+LA++Te +SG Dl+ lc  Aal A+++  
  CDO71236.1 907 DVDLKQLAKKTESFSGSDLKHLCVSAALDAVKERV 941
                 9*******************************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.6e-06    0.0048      22      49 ..     724     751 ..     714     765 .. 0.82
   2 ?    4.5   0.0     0.049        42     123     149 ..     773     799 ..     770     872 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.6e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellrale 49 
                 ++   +ll G++G+GK+ +vr+l++++ 
  CDO71236.1 724 HSMTGCLLFGPPGTGKTLVVRALAKEAG 751
                 445789******************9876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.049
      AAA_16 123 lkrll.allsrderplvlvlDdlqwade 149
                 l r++ +l++r  +p v+++D+l+ +  
  CDO71236.1 773 LVRAVfSLARR-LSPCVVFIDELDALFG 799
                 66677577777.778*********5543 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2     4e-05     0.034       8      29 ..     729     750 ..     723     843 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++GtGKT+++r l++++
  CDO71236.1 729 CLLFGPPGTGKTLVVRALAKEA 750
                 689***************9987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.5   1.3e+03      69      86 ..     163     180 ..     133     242 .. 0.63
   2 !   17.6   0.0   3.9e-06    0.0034       3      42 ..     730     771 ..     729     841 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.5
      AAA_33  69 agrnvildatnlsrrera 86 
                 +g+++ildat ++ +++ 
  CDO71236.1 163 EGGDYILDATVREMARQT 180
                 566677777766544432 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.9e-06
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdq 42 
                 ll G+pG+GK+ +++ l+k+ g  + ++s  +++++++g+++
  CDO71236.1 730 LLFGPPGTGKTLVVRALAKEAGcrMLVVSPSDIMDMYVGEGE 771
                 678*******************99999998888877777544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       8.1   6.9e+03      75     119 ..     183     237 ..     163     239 .. 0.58
   2 ?    1.1   0.1      0.61   5.2e+02      39      75 ..     639     672 ..     627     684 .. 0.79
   3 !   14.5   0.0   4.7e-05      0.04       2      25 ..     730     761 ..     730     844 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.1
      AAA_18  75 knlvidghlaeleseaakdikk...........vvLtaspeelleRlekRgyeeak 119
                 +++v+d ++    +   + +               L+ sp+e ++ +++R+ ee++
  CDO71236.1 183 DVVVLDAVHLAAGECGHFGK-AaasvlqlptnpLQLQSSPQEVIRSMSQRESEEDD 237
                 44555554444444333322.13555555666677888888888888888877765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.61
      AAA_18  39 levdpealdeskrldedkldklldaleenssaleegk 75 
                  e+d++  ++ +++de  +d+++++l++n++ l+e++
  CDO71236.1 639 RENDED--ERAEVEDEADVDEIIEKLKRNPD-LDEHE 672
                 577888..999******************98.33333 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 4.7e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf........g 25 
                 ll G+pG+GKt + ++L+k+ g+         
  CDO71236.1 730 LLFGPPGTGKTLVVRALAKEAGCrmlvvspsD 761
                 589****************9988777655540 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.1e-06    0.0078       2      78 ..     729     798 ..     728     854 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.1e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEverae 78 
                  lL GppGtgK+ +++ la+  ++++++v       ++d+   +   +++++lv  ++  a r +++++++DE++ + 
  CDO71236.1 729 CLLFGPPGTGKTLVVRALAKEAGCRMLVVS------PSDIMDMYV--GEGEKLVRAVFSLARRlSPCVVFIDELDALF 798
                 59******************9999999874......566666666..5666666666665555788888888887654 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-06    0.0048      32      71 ..     726     765 ..     716     769 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.6e-06
       AAA_6  32 klggapaGpagtGKtEtvkdLakalakqvvvfncsdqldy 71 
                  +g+ + Gp gtGKt  v+ Lak+ +  ++v+  sd +d+
  CDO71236.1 726 MTGCLLFGPPGTGKTLVVRALAKEAGCRMLVVSPSDIMDM 765
                 5788899*****************************9996 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05      0.01      20      61 ..     727     768 ..     712     777 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                 EEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYel 61 
                 +  lL G+ G+GKT  vr+lak+ g++  v SP+  ++  Y  
  CDO71236.1 727 TGCLLFGPPGTGKTLVVRALAKEAGCRmLVVSPS-DIMDMYVG 768
                 34899*********************999****8.67777755 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.3e-05     0.028      29      69 ..     722     762 ..     714     802 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.3e-05
      RuvB_N  29 reealdhvllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                 +e+++  +ll+GpPG Gkt + + +ake g ++ + s   +
  CDO71236.1 722 KEHSMTGCLLFGPPGTGKTLVVRALAKEAGCRMLVVSPSDI 762
                 56778889**********************99988875544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.7   8.2e+03      51      79 ..     160     188 ..     143     191 .. 0.76
   2 ?   -0.5   0.1       1.5   1.3e+03     106     143 ..     622     661 ..     581     666 .. 0.73
   3 ?   11.9   0.0   0.00023       0.2       4      25 ..     731     753 ..     729     776 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.7
      AAA_28  51 dllafaervleeqleeeaaaaankvlfcD 79 
                 ++++  + +l++ ++e a++++ +v+++D
  CDO71236.1 160 CPIEGGDYILDATVREMARQTGADVVVLD 188
                 55666677888888888888888888877 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
      AAA_28 106 ekrydlvfllppapei..dddgeRredleereaiderlre 143
                 ++ ++  f +pp++++  ++d+  r ++e+ +++de++++
  CDO71236.1 622 QNVWKTLFSTPPSGKVhrENDEDERAEVEDEADVDEIIEK 661
                 4457789999999999766666656666666677776665 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00023
      AAA_28   4 itGgestGKTtlleaLaar.gyp 25 
                 ++G+++tGKT +++aLa++ g +
  CDO71236.1 731 LFGPPGTGKTLVVRALAKEaGCR 753
                 89***************766655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.098      48      74 ..     727     753 ..     720     797 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
   IstB_IS21  48 enivllGpsGvGKshlaialgveavra 74 
                  +++l+Gp+G+GK+ +  al++ea  +
  CDO71236.1 727 TGCLLFGPPGTGKTLVVRALAKEAGCR 753
                 5789*****************988444 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.2   4.4e+03      65      87 ..     653     672 ..     650     695 .. 0.68
   2 ?   11.1   0.0    0.0003      0.25      19      41 ..     728     750 ..     714     772 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.2
      AAA_11  65 aAvDellerllrglldsegekyk 87 
                 a vDe++e+l r   + +  +++
  CDO71236.1 653 ADVDEIIEKLKR---NPDLDEHE 672
                 679******999...44444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_11  19 itliqGPPGtgKTktivellsql 41 
                  +l+ GPPGtgKT ++ +l +++
  CDO71236.1 728 GCLLFGPPGTGKTLVVRALAKEA 750
                 37999***********9998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.7     6e+02     133     154 ..     173     193 ..     150     206 .. 0.72
   2 ?    0.8   0.1      0.38   3.2e+02      83     110 ..     414     439 ..     408     456 .. 0.66
   3 ?    6.9   0.0     0.005       4.3      36      54 ..     729     747 ..     712     751 .. 0.82
   4 ?   -1.1   0.0       1.4   1.2e+03     142     179 ..     785     830 ..     759     841 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.7
      AAA_25 133 leaaieevegvrlvviDplsra 154
                 +++ +++  g+++vv+D +  a
  CDO71236.1 173 VREMARQ-TGADVVVLDAVHLA 193
                 2333334.67999999988665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.38
      AAA_25  83 edelrrRlravgealrddarllvldlag 110
                 e++++rRl+++ + ++ d+  +++++ +
  CDO71236.1 414 EKRVQRRLKRWARGNS-DDVPRLHTV-N 439
                 6699********9983.333333333.3 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.005
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pgtGKt ++  la
  CDO71236.1 729 CLLFGPPGTGKTLVVRALA 747
                 79**********9987776 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.4
      AAA_25 142 gvrlvviDplsralgg...densnsd....v.galvealeriarrt 179
                  + +v iD l++++g+    e  ns     v +++++ ++ ++  +
  CDO71236.1 785 SPCVVFIDELDALFGArlsRESGNSLahrgViTEFMQEMDGLKSSK 830
                 477999******9999885555555444543366666666665555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.13      50     116 ..     723     794 ..     715     842 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      DUF815  50 glpannvLLwGarGtGKSslvkallneyaeegLrl..ievekedlkelpklvellr...erperfilfvDDL 116
                  ++    LL+G  GtGK  +v+al +e+  + L +   ++    + e +klv+++    +r   +++f+D L
  CDO71236.1 723 EHSMTGCLLFGPPGTGKTLVVRALAKEAGCRMLVVspSDIMDMYVGEGEKLVRAVFslaRRLSPCVVFIDEL 794
                 5566678*****************999877765431123444444444566666551115555689999987 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.16      48      73 ..     729     754 ..     714     763 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
       Rad17  48 LLisGPsGCgkstvvkvLskelgikl 73 
                  L+ GP+G gk+ vv+ L+ke g ++
  CDO71236.1 729 CLLFGPPGTGKTLVVRALAKEAGCRM 754
                 6899*****************99875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00052      0.44       5     136 ..     729     845 ..     726     853 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtideleelclaevirqnekaeskedkg 99 
                 +l++Gp+g+GKT +++ l    g + l++   +   ++++ +++      +++ +v +la+ l+++ +++iD +d l     a + r +++ +      
  CDO71236.1 729 CLLFGPPGTGKTLVVRALakeaGCRMLVVSPSD-IMDMYVGEGE------KLVRAVFSLARRLSPC-VVFIDELDAL---FGARLSRESGN-SL----- 810
                 689**********99999776677777776666.5566666665......6788888888888877.7889999988...44555555555.22..... PP

      AAA_24 100 dgkGygelaeefrrllkklqelrk.nvifiahektrkd 136
                    +   + +ef++ ++ l++ ++ nvi+i+ +    d
  CDO71236.1 811 ---AHRGVITEFMQEMDGLKSSKDsNVIVIGATNRPFD 845
                 ...35678889999999999999889998887766655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00028      0.24       2      33 ..     718     749 ..     717     763 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00028
      AAA_19   2 reavealkekvllvtaGpGtGKTrvlkhival 33 
                 + ++++++ + +l+ ++pGtGKT v+++  ++
  CDO71236.1 718 QGILKEHSMTGCLLFGPPGTGKTLVVRALAKE 749
                 556667888889**************988765 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.23      42     102 ..     720     776 ..     714     783 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  42 likekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqa 102
                 ++ke+ ++  + Ll Gp+gtGkt +  a++ke g      ++s s++  + v   e l++a
  CDO71236.1 720 ILKEHSMT--GCLLFGPPGTGKTLVVRALAKEAG--CRMLVVSPSDIMDMYVGEGEKLVRA 776
                 57888888..57999*****************99..5566778888888777777777665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0021       1.8      31      57 ..     722     748 ..     718     754 .. 0.88
   2 ?   -0.7   0.0      0.96   8.2e+02     106     134 ..     772     800 ..     767     810 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0021
        TniB  31 krkrmpnlllvGdsnnGKtmivekFar 57 
                 k++ m  +ll+G++ +GKt +v+  a+
  CDO71236.1 722 KEHSMTGCLLFGPPGTGKTLVVRALAK 748
                 7899******************98776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.96
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllag 134
                 kl ++v +l r+l++ v+ iDE++ l  +
  CDO71236.1 772 KLVRAVFSLARRLSPCVVFIDELDALFGA 800
                 6778899999*************998744 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.2   4.4e+03      71     129 ..     182     237 ..     162     240 .. 0.54
   2 ?    1.1   0.6      0.58     5e+02     113     130 ..     414     431 ..     410     434 .. 0.87
   3 ?    9.1   0.0    0.0019       1.6       1      30 [.     732     763 ..     732     777 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.2
                 SSEEEEEE-SEEEETTEEEESSHHHHHHHH...SEEEEEE--HHHHHHHHHHHTTST-TS CS
      AAA_17  71 kkgvlvdghprikeqagfldglpkevleelk.pdaiilleadpeeilerrlkdrtrgrdd 129
                  + v++d        ag+  ++ k     l+ p+  + l+ +p+e+++ + ++ +++ dd
  CDO71236.1 182 ADVVVLDAVHLA---AGECGHFGKAAASVLQlPTNPLQLQSSPQEVIRSMSQR-ESEEDD 237
                 444555554432...44444444444444441467777888888888666664.444444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.58
                 HHHHHHHHHHTTST-TS- CS
      AAA_17 113 eeilerrlkdrtrgrddd 130
                 e+ ++rrlk+  rg +dd
  CDO71236.1 414 EKRVQRRLKRWARGNSDD 431
                 7789***********998 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0019
                 EE-TTSSHHHHHHHHHHHHTEEE..EEHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfth..lsaGdll 30 
                 +G+PG GK+ +++ l+++ g  +  +s +d++
  CDO71236.1 732 FGPPGTGKTLVVRALAKEAGCRMlvVSPSDIM 763
                 6******************8775115666766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 6969.46
//
Query:       CDO71237.1  [L=262]
Description: hypothetical protein BN946_scf184863.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-14   52.3   0.4    7.4e-14   52.3   0.4    2.4  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.4   4.1e-18   7.4e-14       2      66 .]      41     103 ..      40     103 .. 0.91
   2 ?   -1.8   1.6      0.32   5.7e+03      41      41 ..     132     132 ..     105     227 .. 0.62

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 4.1e-18
                      -HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      +Pn+i ++r++l+ l++   +++y+  ++ +l+ i++l+Da+DG+ AR l+q s++G++lD + D
       CDO71237.1  41 VPNLIGYSRIILAALSLH--YMSYHPKYCTVLYCISCLLDAFDGHAARALGQASKFGAVLDMVTD 103
                      7***********888885..446666**************************999*******998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.32
                      T CS
  CDP-OH_P_transf  41 D 41 
                      D
       CDO71237.1 132 D 132
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1936.46
//
Query:       CDO71238.1  [L=459]
Description: hypothetical protein BN946_scf184863.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-16   58.6   0.0    9.8e-16   57.9   0.0    1.3  1  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.036   13.1   0.1       0.16   11.0   0.0    2.0  2  SE             Squalene epoxidase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   1.1e-19   9.8e-16      86     315 ..      53     299 ..       7     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.1e-19
                    EEEEHH...CHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHT..GG CS
  FAD_binding_3  86 aradle...lesspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlg..ie 175
                    a+ +le    +  ++ +  ++  +l+ +L+++a + + ++v f+++++s+  d ++    vr+ ++ge+ +v+ ++ vGaDG  S vr++l   ++
     CDO71238.1  53 AKGRLEsqpYDRDGQCINSISRAYLNEDLLKEALAVPnIRVFFEHKITSIDFDRKK--LSVRNTAAGEDVDVHFDFCVGADGSYSVVRRQLMrvVR 146
                    333333334567788888899999************************77666555..78999999************************973255 PP

                    EEEEEEEEEEEEEEEEEEC.-SCCCTTC.CEEEEECCTTEE.....EEEECCETEEEEEEEEECCE-GGGS..CCCHHHHHH...HHHHHHHHTTS CS
  FAD_binding_3 176 fegeetvyeagvldvlfda.dlsdivep.lvlilsaesrgv.....mviPlentlerfyvqvearaekeer..sekfteeev...karlreivgek 259
                    +  ++  ++ + +++ + a + +++  +  +l+  ++  +      m+i+l n+++ f+  + a + + +r  s+++  +       ++  ++ge+
     CDO71238.1 147 MDYQQWYIPHDYIELKMPAgPPKQPGGDpTYLLDPNHLHIWprhtfMLIALPNKDKTFTCTLFAPTADFDRldSDETILKWFganFPDALPLIGEQ 242
                    88888889999********788877777744444444444466666999888855544444433333323333333333333111456777899** PP

                    SCEEEEEEEEEEEEEEEEESSSE.ETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHH CS
  FAD_binding_3 260 tldveieevsawtvaqrvaekyr.kgrvflaGDAaHihpPtgGqGlNtaiqDavnLa 315
                    +l  ++ +  +  + +  a++y+ k+r  + GD+aH++ P  GqGlN +++D+  L 
     CDO71238.1 243 ALLEDFHRNPRSSLMSIKAKPYHyKDRAVILGDSAHAMVPFYGQGLNCGLEDVRVLD 299
                    **********************9456**************************98775 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.062   5.6e+02       5      20 ..     127     142 ..     124     150 .. 0.85
   2 ?   11.0   0.0   1.8e-05      0.16     129     167 ..     267     305 ..     220     385 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.062
          SE   5 tvvcDGifsklRkels 20 
                  v +DG +s +R++l+
  CDO71238.1 127 CVGADGSYSVVRRQLM 142
                 5789**********97 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.8e-05
          SE 129 kkGlillGDalnmRHPltggGmtvalnDivllskllkpl 167
                 k  +++lGD+     P  g G+  +l+D+ +l  ll++ 
  CDO71238.1 267 KDRAVILGDSAHAMVPFYGQGLNCGLEDVRVLDILLREA 305
                 466899**************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3344.74
//
Query:       CDO71239.1  [L=170]
Description: hypothetical protein BN946_scf184863.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-05   22.4  55.9      0.022   14.6   5.8    4.6  4  AT_hook       AT hook motif


Domain annotation for each model (and alignments):
>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   8.2   0.00013       2.3       1      13 []      66      78 ..      66      78 .. 0.91
   2 !    5.8  10.3    0.0009        16       2      12 ..     100     110 ..      99     111 .. 0.89
   3 !   12.3   7.6   6.6e-06      0.12       1      11 [.     127     137 ..     127     139 .. 0.91
   4 !   14.6   5.8   1.3e-06     0.022       1      11 [.     159     169 ..     159     170 .] 0.92

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00013
     AT_hook  1 kRkRGRPrKaatk 13
                kRkRGRP+ +++k
  CDO71239.1 66 KRKRGRPKGSKNK 78
                8*******99986 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0009
     AT_hook   2 RkRGRPrKaat 12 
                 R+RGRP+K ++
  CDO71239.1 100 RPRGRPPKRPK 110
                 9*******976 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6.6e-06
     AT_hook   1 kRkRGRPrKaa 11 
                 kRkRGRPrK++
  CDO71239.1 127 KRKRGRPRKNP 137
                 8********96 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 1.3e-06
     AT_hook   1 kRkRGRPrKaa 11 
                 kRkRGRP+K+a
  CDO71239.1 159 KRKRGRPPKNA 169
                 8********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1287.93
//
Query:       CDO71240.1  [L=357]
Description: hypothetical protein BN946_scf184863.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-11   45.2   0.0    2.8e-11   44.3   0.0    1.5  1  PRKCSH    Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
      0.034   13.8   0.0       0.57    9.9   0.0    2.0  2  PRKCSH_1  Glucosidase II beta subunit-like protein


Domain annotation for each model (and alignments):
>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.1e-15   2.8e-11       1      65 [.     154     233 ..     154     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.1e-15
                 X-EEEEEETTEEEEEETTTEEEEE-E.............ETTEE-S--EEEEEE......EEEEEEE-------.....--- CS
      PRKCSH   1 gkCvsskegwwtYelCygkkvrQfhe.............pekekgksevvLGrf....nkeehsewaekneaksystedeek 65 
                 gkC+++ +gw+tY++C++++vrQfhe             pe++++ + ++LGr     +++ +  +ae+++a+s   e   +
  CDO71240.1 154 GKCLYHRQGWFTYSYCHNSHVRQFHElhhqhipstgeykPEEDPEWEAYTLGRApatlEAGAELTTAEAAAAAS--LELARG 233
                 69**************************************************9977653333333333333333..444444 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.022   1.9e+02      34      75 ..     147     195 ..     135     207 .. 0.79
   2 ?    9.9   0.0   6.3e-05      0.57     104     139 ..     247     282 ..     236     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.022
                 XX-TTTTT-EEEEEETTEEEEEETTSEEEE......TTE.EEEEEEEEE CS
    PRKCSH_1  34 DiyRalegrevkekigdYeYkvvllesvvq......ddi.siGefkkqe 75 
                  +++ l g+++ ++ g ++Y ++    v q      ++i s Ge+k  e
  CDO71240.1 147 SLLQPLSGKCLYHRQGWFTYSYCHNSHVRQfhelhhQHIpSTGEYKPEE 195
                 57788999****************9999998777665554567776666 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 6.3e-05
                 S-EEEEEEEEETTEEEEEEEEGGG--XXXXXXXXXX CS
    PRKCSH_1 104 enelvsvseaekCeYllkvkspaaCsnvllkkslae 139
                 ++ ++ v e++ C+Y +++ +p  C +  ++  + +
  CDO71240.1 247 TDTILFVKETQTCHYVVHIATPRLCGEPGFRSRVDS 282
                 568999*******************77766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2531.91
//
Query:       CDO71241.1  [L=927]
Description: hypothetical protein BN946_scf184863.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-46  159.3   0.0    1.6e-45  155.6   0.0    2.1  2  Pkinase        Protein kinase domain
    9.8e-28   97.1   0.0    1.6e-27   96.4   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0076   16.2   0.1      0.022   14.7   0.1    1.8  1  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.086   11.8   0.0       0.17   10.8   0.0    1.4  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   3.5e-49   1.6e-45       5     201 ..     303     507 ..     300     557 .. 0.91
   2 ?    1.3   0.0      0.04   1.8e+02     233     260 ..     785     856 ..     725     858 .. 0.66

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 3.5e-49
                 EEEEEESSEEE..EEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   5 eklGeGsfGkV..ykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 + lG+G+ G+V  +ka +k+ g i+AvK+++ ++  ++++   kkv++E  +  +lkhpni++ +++++++ ++y v+ey++ + l++++  +g+++  
  CDO71241.1 303 RVLGSGAGGTVrlIKASNKNGGTIFAVKEFRPKRHGESEReyqKKVTAEFCVGSTLKHPNIIETVDIVTDHGHFYEVMEYAPYD-LFSVVM-SGNMTRP 399
                 789********66688899999*********9999888877899**************************************77.888885.699**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyellt 192
                 e+  +++qi+ g+eylHs g+ HrDlK +N  + +++++K++DFG a+ ++   k    +t +vg+  YlAPEvl++ +y  +k+DvWs+++i+++++ 
  CDO71241.1 400 EIYCVFRQICDGVEYLHSLGLAHRDLKLDNCVMTKDNVVKLIDFGTATVFHYPGKkttlATGIVGSDPYLAPEVLSQDKYdPRKTDVWSVAIIFMCMVL 498
                 ***************************************************99988999999*************99999789**************** PP

                 SS-STTTSS CS
     Pkinase 193 gkppfsgek 201
                 ++ p++  +
  CDO71241.1 499 RRFPWKIPD 507
                 *****9444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.04
                 S............................................-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 233 i............................................seeakdllkkllkkdpkkRltaeellq 260
                                                              ++e ++ ++++l ++p+ R+t ++ll+
  CDO71241.1 785 AtpahakaetteasptprrgrprtssvtsvatfstggaesifrllPRESRSAIRRMLYVEPSARCTLTDLLK 856
                 0444444455555555555555666666666667777777777779999999**************999986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   3.7e-31   1.6e-27       3     196 ..     301     494 ..     300     504 .. 0.88

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 3.7e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                   g+ lG+Ga G+V   +++  +++  +  avK ++ + + e+    +++++ e  + ++lkhpni++ + ++t++++ + v+ey+++  ++  +  + 
   CDO71241.1 301 WGRVLGSGAGGTVRLIKAS--NKNGGTIFAVKEFRPKRHGESereyQKKVTAEFCVGSTLKHPNIIETVDIVTDHGHFYEVMEYAPYDLFSVVMSGN- 395
                  5789**********99999..8899999******654332221235889999***********************************7777777666. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfG 192
                     +t  +++++  q+++G+eyL+s  l Hrdl   N+++++++vvk+ DfG a    +  ++++ +++   +  ++apE+l++ k+   k+DvWs +
   CDO71241.1 396 ---MTRPEIYCVFRQICDGVEYLHSLGLAHRDLKLDNCVMTKDNVVKLIDFGTATVFhYPGKKTTLATGIVGSDPYLAPEVLSQDKYDpRKTDVWSVA 490
                  ...9**************************************************99857777778888899999************97479*****99 PP

                  HHHH CS
  Pkinase_Tyr 193 vllw 196
                  ++ +
   CDO71241.1 491 IIFM 494
                  9865 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.9e-06     0.022     166     198 ..     418     448 ..     406     451 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.9e-06
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                  +l H+Dl+++N +++  ++ v+ +iDf++a++
  CDO71241.1 418 LGLAHRDLKLDNCVMT--KDNVVKLIDFGTATV 448
                 6899************..444447*******97 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.7e-05      0.17     225     254 ..     417     446 ..     358     458 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.7e-05
  Haspin_kinase 225 kfeFEHRdLhldniLvdknlnvtlidlkls 254
                    ++ + HRdL+ldn  + k   v lid+  +
     CDO71241.1 417 SLGLAHRDLKLDNCVMTKDNVVKLIDFGTA 446
                    67789*********************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1640  (0.0914719); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.53
# Mc/sec: 5223.21
//
Query:       CDO71242.1  [L=87]
Description: hypothetical protein BN946_scf184863.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                       87  (0.00485247); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 677.45
//
Query:       CDO71243.1  [L=770]
Description: hypothetical protein BN946_scf184863.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-48  162.7   0.0    1.5e-46  158.4   0.0    2.3  2  DEAD          DEAD/DEAH box helicase
    2.6e-29  101.8   0.0    2.2e-28   98.8   0.1    2.3  2  Helicase_C    Helicase conserved C-terminal domain
    0.00035   20.6   0.1     0.0014   18.6   0.0    2.0  2  ResIII        Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
        3.5    7.5  15.3         11    5.8  15.3    1.9  1  DivIC         Septum formation initiator


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   0.0   3.3e-50   1.5e-46       2     175 ..     368     564 ..     367     565 .. 0.96
   2 ?    1.9   0.0     0.037   1.7e+02      44     105 ..     612     673 ..     574     689 .. 0.79

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 3.3e-50
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl 94 
                 +iQ++aip+ l+++d+++ aeTGsGKT+af+ip+l+ +++       ++  gp ali++PtreLa+q+ +++kkf  +++ ++++i+gg + ++q+ +l
  CDO71243.1 368 AIQRQAIPIGLQNRDIIGIAETGSGKTAAFVIPMLAFISKLppfnddNRHLGPYALIMAPTRELAQQIESETKKFAGPLGFTCVSIVGGRSVEEQQFNL 466
                 79*********************************999877***9998999************************************************ PP

                 HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT.................SEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxx RF
        DEAD  95 dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq.................rqvivlSATlpkdvkk 175
                 ++g++i+++tpgrl d+++++ + lsq+r++V+DEadr+ + gf+ ++  il +lp+ t +g+ +                 r + ++SAT+p  v++
  CDO71243.1 467 RSGAEIIIATPGRLKDVIERHVIVLSQCRYVVMDEADRMVNLGFEADLTFILDKLPSDTMEGEDKgvqmdvdgetmikkgrtRVTTLFSATMPPPVER 564
                 *************************************************************99667*************98666*********98887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.037
                 TSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  44 gktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgtp 105
                 ++ +p +++ +  ++ a  ++++l++ + ++  ++++  ++++++  l++l+ g +di+v+t 
  CDO71243.1 612 NEYAPPIIVFVNQKKTADMVARDLQRAGWNAA-TLHSGKTQEQREAALQALRTGdADILVATD 673
                 66677788888888888888888888888643.6666777888899999998778*****995 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.3   1.4e+03      14      60 ..     417     467 ..     402     477 .. 0.69
   2 !   98.8   0.1     5e-32   2.2e-28       2     111 .]     601     710 ..     600     710 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.3
                 TTTSEEEEEESSHHHHHH....HHHHHHHT....TSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  14 eeggkilifvntidrlek....vklllekk....gikvavlhgelpqnereeile 60 
                 + g  +li+++t++ +++    +k     +    g++++ + g  + +e++  l+
  CDO71243.1 417 HLGPYALIMAPTRELAQQieseTKK----FagplGFTCVSIVGGRSVEEQQFNLR 467
                 5566789999999966553334455....34456999999999998888775554 PP

  == domain 2  score: 98.8 bits;  conditional E-value: 5e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k +++le+l+++e    i++fvn+++++++ ++ l ++ g ++a+lh+  +q++re++l++ + g+ d+L+atd a+rGid+++v+lVin+++  +++ 
  CDO71243.1 601 KKQRMLEILNSNEYAPPIIVFVNQKKTADMvARDL-QRAGWNAATLHSGKTQEQREAALQALRTGDADILVATDLAGRGIDVQDVSLVINYQMANTIEA 698
                 67889999999*****************9855555.677************************************************************ PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  CDO71243.1 699 YVHRIGRTGRAG 710
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.9         2     9e+03     100     122 ..      23      51 ..      12      77 .. 0.53
   2 !   18.6   0.0   3.2e-07    0.0014      24     145 ..     380     506 ..     357     525 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2
                 ....-SEEEEEHHHHHHTH.......... CS
      ResIII 100 dstnkkilvttiqsldadseee......e 122
                 ++  k  ++t++q+++ +++++      +
  CDO71243.1  23 EAAAKPKFLTKEQRAQLAIQQReqeireQ 51 
                 44444445555555555553333222221 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.2e-07
                 TSEEEEEESTTSTHHHHHHHHHHHH-S..............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHH CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkee.........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiq 112
                 ++ ++  ++TG+GKT   +  + ++ +k +            +l+++p+++l +q ++e kkf+ +       +v g++ ++ + + ++ ++i+++t  
  CDO71243.1 380 NRDIIGIAETGSGKTAAFVIPMLAFISKLPPFnddnrhlgpYALIMAPTRELAQQIESETKKFAGPLGFTCVSIVGGRSVEEqQFNLRSGAEIIIATPG 478
                 556666789******98766666666665544566799**99**********************998765333444443333323457899******** PP

                 HHHHTH........HHHTTT-SEEEEETGGGTT CS
      ResIII 113 sldadseeeeeeseellrdrfdviiiDEaHrlg 145
                 +l+  +     e++    ++  ++++DEa r+ 
  CDO71243.1 479 RLKDVI-----ERHVIVLSQCRYVVMDEADRMV 506
                 ***999.....99999999999******98776 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  15.3    0.0025        11      16      62 ..      38      84 ..      35      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0025
                XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXX CS
       DivIC 16 llaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerAR 62
                +la++q +qei ++++  ++ ++++e+Le++ ++L++ e   e+ AR
  CDO71243.1 38 QLAIQQREQEIREQKEREERARKDREALERQAEELRQKERERERAAR 84
                6899*******************************977777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1812  (0.101065); expected 358.6 (0.02)
Passed bias filter:                      763  (0.0425568); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 4952.81
//
Query:       CDO71244.1  [L=124]
Description: hypothetical protein BN946_scf184908.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 910.57
//
Query:       CDO71245.1  [L=513]
Description: hypothetical protein BN946_scf184908.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.23   11.6   0.0    1.5  1  DNA_ligase_IV  DNA ligase IV


Domain annotation for each model (and alignments):
>> DNA_ligase_IV  DNA ligase IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.23       1      15 [.     450     464 ..     450     466 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
  DNA_ligase_IV   1 TkehFakEYDeYGDS 15 
                    T  ++a  YD+YGDS
     CDO71245.1 450 TSNRLASVYDCYGDS 464
                    77899999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3504.80
//
Query:       CDO71246.1  [L=303]
Description: hypothetical protein BN946_scf184908.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-49  166.2   0.1    1.2e-48  165.8   0.1    1.1  1  Pkinase         Protein kinase domain
    6.4e-27   94.5   0.0    8.7e-27   94.0   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    9.2e-05   21.4   0.4    0.00014   20.8   0.4    1.3  1  Pkinase_fungal  Fungal protein kinase
    0.00038   20.0   0.0    0.00068   19.2   0.0    1.3  1  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
    0.00059   19.3   0.1    0.00085   18.7   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.039   13.9   0.0    1.3  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.1   4.1e-52   1.2e-48      25     186 ..     126     290 ..     113     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 4.1e-52
                 EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS CS
     Pkinase  25 kivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrD 123
                  +vA+K+i k+k k ++ ++v+ E+++l+ l+hpniv++ye+fe+ +++yl +e+++ggel++++ +kg+++e++a  ++k+il+g++ylH++ i+HrD
  CDO71246.1 126 VEVALKVIPKKKVKGNE-SSVWGEMEVLRGLDHPNIVKFYEWFESRTKYYLSFELAQGGELFERIVKKGKFTESDAVAVLKSILSGVKYLHDHDIVHRD 223
                 579********999988.59******************************************************************************* PP

                 -SGGGEEEE.TTTE..EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHH CS
     Pkinase 124 lKpeNiLid.ekge..lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvi 186
                 lKpeNiL+  ++++  + i+DFG+ak+l++ ++ l s  g+  Y+APEv ++++++k+vD+Ws+G +
  CDO71246.1 224 LKPENILYRtQDEHsdIVIADFGIAKHLHTPEEqLFSLAGSFGYVAPEVPNKKGHGKAVDIWSIGSV 290
                 ********95555588*************998889******************************86 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   2.9e-30   8.7e-27      23     192 ..     120     288 ..     106     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 2.9e-30
                  TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  23 ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLe 120
                  ++++ +v+Va+K++ +++ + +++++  e+++++ l+hpnivk++ +  ++ ++++ +e+++gG+L + + kk   k+t +d + +   + +G++yL+
   CDO71246.1 120 DENDFTVEVALKVIPKKKVKGNESSVWGEMEVLRGLDHPNIVKFYEWFESRTKYYLSFELAQGGELFERIVKK--GKFTESDAVAVLKSILSGVKYLH 215
                  6677789*******99999999*************************************************98..9********************** PP

                  HTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr 121 skklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                  ++++vHrdl   N+L ++   ++ + i+DfG+a++++     ++  +   ++ ++apE+ ++k   ++ D+Ws G
   CDO71246.1 216 DHDIVHRDLKPENILYRTqdeHSDIVIADFGIAKHLH--TPEEQLFSLAGSFGYVAPEVPNKKGHGKAVDIWSIG 288
                  ***************98744366899**********3..33445567788999********************88 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   4.8e-08   0.00014     306     397 ..     198     284 ..      76     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.8e-08
  Pkinase_fungal 306 kellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     ++++++l+  + g + L+ +  i+HrD   +Nil    +++++   +++D+ +ak+l+++  e++     G   ++a ev +++ H    D+
      CDO71246.1 198 SDAVAVLKSILSGVKYLH-DHDIVHRDLKPENILYR--TQDEHSDIVIADFGIAKHLHTP--EEQLFSLAGSFGYVAPEVPNKKGHGKAVDI 284
                     567889999999******.***************99..67778999************64..455578899999999888887778766665 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.3e-07   0.00068     111     166 ..     186     244 ..     181     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
  YrbL-PhoP_reg 111 Ledlvkkeelta.elkeaLdef...leelldnhivtndlsakNivvkknsegeeelvlvD 166
                    +e++vkk+++t+ +    L+     +++l d +iv +dl+++Ni++++++e   ++v+ D
     CDO71246.1 186 FERIVKKGKFTEsDAVAVLKSIlsgVKYLHDHDIVHRDLKPENILYRTQDEHS-DIVIAD 244
                    677788888887433334444412279***********************999.777776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.8e-07   0.00085     116     169 ..     196     248 ..     177     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.8e-07
         Kdo 116 aeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                  e+   a lk +   ++ lh+ ++ H+dl + nil ++++ e+  i++ D+  a
  CDO71246.1 196 TESDAVAVLKSILSGVKYLHDHDIVHRDLKPENILYRTQD-EHSDIVIADFGIA 248
                 5555667888899999***********************7.9999999999655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.039     124     196 ..     162     248 ..      49     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                 CHHHHHHCHHHCCCGCCTCC...HHHHHHHH.......HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT- CS
         APH 124 ellrqlesatarllaselld...lleeleeq.......vlaalaallpg...elptvllHgDlhpgNllvd.pddgrvtGviDfeda 196
                 ++++++es+t+ +l  el +   l e++ +        + a l+  l g     ++ ++H+Dl+p N+l + +d++  + + Df+ a
  CDO71246.1 162 KFYEWFESRTKYYLSFELAQggeLFERIVKKgkftesdAVAVLKSILSGvkyLHDHDIVHRDLKPENILYRtQDEHSDIVIADFGIA 248
                 567788888888888888887766666666688777775555555555577789999**************7333333346677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2115.25
//
Query:       CDO71247.1  [L=1125]
Description: hypothetical protein BN946_scf184908.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 7707.67
//
Query:       CDO71248.1  [L=147]
Description: hypothetical protein BN946_scf184908.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-27   95.3   0.0    5.4e-27   94.7   0.0    1.5  1  Histone   Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0     3e-31   5.4e-27      13     107 ..      45     147 .]       3     147 .] 0.87

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 3e-31
                 XEEXXXXXXXXXXHTTS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.........TTSSSXEEXHHHHHHHHHHHHHHHHHH CS
     Histone  13 ektapekkvsakkerkasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivk........sekedlrisaeavlalqealEallvel 103
                  ++a ++ +s + +r + +   + +k+r+rpgtval+eirkyqkstdlliqklpf+Rvvrei            +++lr++++a+lalqea+Ea+lv++
  CDO71248.1  45 AGRASDAGPSGAGRRGSGQGADQPRKKRFRPGTVALREIRKYQKSTDLLIQKLPFSRVVREIALdmmtdmvdYGDTGLRWQSSAILALQEATEAFLVHM 143
                 3334444444454457888888999*************************************999999999999************************* PP

                 HHHH CS
     Histone 104 feeA 107
                 fe+A
  CDO71248.1 144 FEDA 147
                 ***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1105.18
//
Query:       CDO71249.1  [L=406]
Description: hypothetical protein BN946_scf184908.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.53
# Mc/sec: 2313.49
//
Query:       CDO71250.1  [L=338]
Description: hypothetical protein BN946_scf184908.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-34  116.9  25.2    9.4e-34  116.9  25.2    1.6  2  TRAM_LAG1_CLN8  TLC domain
    7.1e-20   70.4   0.0    1.7e-19   69.2   0.0    1.7  1  TRAM1           TRAM1-like protein
  ------ inclusion threshold ------
       0.11   11.8   2.5       0.19   11.1   2.5    1.3  1  DUF639          Plant protein of unknown function (DUF639)


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.47   2.8e+03     133     153 ..      65      84 ..      33      89 .. 0.62
   2 !  116.9  25.2   1.6e-37   9.4e-34       1     198 []     103     311 ..     103     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.47
  TRAM_LAG1_CLN8 133 lfngllfllsFfvcRlvllpy 153
                     +f  + +++++ ++R  ll y
      CDO71250.1  65 AF-ICYYVVFWALVRQSLLVY 84 
                     33.133444455556555544 PP

  == domain 2  score: 116.9 bits;  conditional E-value: 1.6e-37
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlssspelwegy.......perilgathfllkayyllalgYfiyd.llvlllyekkrkdfvemliHhiitlvll 87 
                     +f e+++ ++++ ++ ++g+ ++s+ p +w+ +       p+ +++     lk yyl++ +Y+ ++ l++ll  ek rkd++e+++Hh++t++l+
      CDO71250.1 103 RFGEQGYAILYFAVMGAWGMRIMSTLPTWWYRTeyfwidyPHWEMKP---ELKRYYLMQGAYWCHQlLVLLLRLEKPRKDHYEFVAHHFVTIWLV 194
                     699************************88887755665335555533...6678************4455556699999**************** PP

  TRAM_LAG1_CLN8  88 vlsyvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap........... 171
                      +sy+ nl+ +g +v+l ++l d fl+++ +l+y+ +  +  k  +f  ++fl +++++R+ l  ++il+s++++++ ++++a+           
      CDO71250.1 195 GWSYLINLTYIGNAVYLSMDLPDTFLAMSLLLNYI-QW-DRVKMTVF--AVFLPIWTYFRHWLN-WVILWSVWFEFD-RMPEASkrwspedgawm 283
                     ***********************************.99.888999**..************998.99*********7.67777789********* PP

  TRAM_LAG1_CLN8 172 .lwlpliflilllvLqllnlyWfylivk 198
                      +w+ + +++ ll+Lq+lnl+W +li++
      CDO71250.1 284 vWWMKYQVFVPLLLLQALNLFWYFLICR 311
                     **************************97 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.9e-23   1.7e-19       1      63 [.      37      98 ..      37      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.9e-23
       TRAM1  1 tskFifLsynvplsansetglYgkGlkDlafvffyvivftflRaflmeyvlrPlarrlgikkk 63
                +s+ +f+s+++p  +++++++Y+kG+ Dlaf+++yv+++  +R++l  yvlrPl rrlg+kk+
  CDO71250.1 37 FSPLLFISHRIP-GTSDDDPRYQKGYLDLAFICYYVVFWALVRQSLLVYVLRPLGRRLGLKKE 98
                5899********.7899*********************************************8 PP

>> DUF639  Plant protein of unknown function (DUF639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.5   3.2e-05      0.19      52      97 ..     223     268 ..     208     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
      DUF639  52 tlfeevvyWeePsktvvflaltiliiyrellqyvlavalifvaikm 97 
                 +l+++ + W++ ++tv+ + l i + +r++l+ v+  ++ f    m
  CDO71250.1 223 SLLLNYIQWDRVKMTVFAVFLPIWTYFRHWLNWVILWSVWFEFDRM 268
                 67788899***************************98888876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2279.90
//
Query:       CDO71251.1  [L=424]
Description: hypothetical protein BN946_scf184908.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-33  115.9  24.2    1.9e-33  115.9  24.2    1.6  2  TRAM_LAG1_CLN8  TLC domain
    3.8e-21   74.5   0.4    3.8e-21   74.5   0.4    2.2  2  TRAM1           TRAM1-like protein


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3      0.55     5e+03     138     147 ..     149     158 ..     135     171 .. 0.50
   2 !  115.9  24.2   2.2e-37   1.9e-33       1     198 []     183     391 ..     183     391 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.55
  TRAM_LAG1_CLN8 138 lfllsFfvcR 147
                      +++++ ++R
      CDO71251.1 149 YYIVFWSFVR 158
                     2222233333 PP

  == domain 2  score: 115.9 bits;  conditional E-value: 2.2e-37
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlssspelwegy.......perilgathfllkayyllalgYfiydllvllly.ekkrkdfvemliHhiitlvll 87 
                     +f e+++ + +++++ ++g+ ++s+ p +w+ +       p+ +++     lk yyl++++Y+ ++llvlll  ek rkd+ e+++Hh++t++l+
      CDO71251.1 183 RFGEQGYAVAYFFVMAAWGMRIMSQLPTWWYRTdqfwidyPHWEMKP---ELKRYYLMQAAYWCQQLLVLLLGlEKPRKDYNELVAHHFVTIWLV 274
                     689************************66666644443226555544...6778************7777665388899**************** PP

  TRAM_LAG1_CLN8  88 vlsyvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap........... 171
                      +sy+ nl+ +g +v+l ++l d +l l+k+l+y+ +    +k  +f  ++f++++ ++R+ l  +++l+s++++++l  +t +           
      CDO71251.1 275 GWSYLINLTYIGNAVYLSMDLPDTLLGLSKLLNYI-QW-NRTKTAVF--AVFIVVWSYFRHWLN-WVMLWSVWYEFDLMPETSKrwsprdgvwmv 364
                     ***********************************.88.77799***..************988.99*********97766666*********** PP

  TRAM_LAG1_CLN8 172 lwlpliflilllvLqllnlyWfylivk 198
                     +w+ + +++ +++Lq+lnl+W +li++
      CDO71251.1 365 WWMKYQVFAPIVLLQALNLFWYVLIWR 391
                     *************************97 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.4   4.2e-25   3.8e-21       2      63 ..     118     178 ..     117     179 .. 0.96
   2 ?   -3.4   0.9       0.9   8.1e+03      33      44 ..     320     331 ..     317     334 .. 0.74

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 4.2e-25
       TRAM1   2 skFifLsynvplsansetglYgkGlkDlafvffyvivftflRaflmeyvlrPlarrlgikkk 63 
                 ++ if+s++vp  +++++++Y+kG+ Dl+f+++y+++++f+R++ + yv+rP+a+++gi+k+
  CDO71251.1 118 APLIFISHRVP-GSPDDDPRYQKGYLDLVFIAYYIVFWSFVRQSFTIYVCRPIAQWFGIRKE 178
                 689********.799*********************************************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.9
       TRAM1  33 ffyvivftflRa 44 
                 + +++v++ +R 
  CDO71251.1 320 AVFIVVWSYFRH 331
                 667899998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2900.82
//
Query:       CDO71252.1  [L=448]
Description: hypothetical protein BN946_scf184908.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-05   25.4   0.4    0.00099   19.4   0.4    2.3  1  EloA-BP1         ElonginA binding-protein 1
     0.0075   17.0   6.6       0.14   12.9   7.1    2.6  2  CHORD            CHORD


Domain annotation for each model (and alignments):
>> EloA-BP1  ElonginA binding-protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.4   1.1e-07   0.00099      22      99 ..      28     106 ..      19     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-07
    EloA-BP1  22 nlfideclkiy.....ssedeAyerAleeEkavydrsssknvylnvavntlkkLrkeksssssavekssaksskkkvvsheav 99 
                 +++ d+++ +y     ++++ A+e Al  E++vy++s sk  y n++++ +  L+++ ++  +a++ s++  ++++v+ +e +
  CDO71252.1  28 KTLYDHFVVLYekilpTNPTLAAEHALRQEEEVYKKS-SKLTYRNAVISSVAALKRR-PKPDTASHASVG--TESEVLAREEM 106
                 556666666662222235788*************997.6889***************.444444443332..22333333333 PP

>> CHORD  CHORD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.16   1.5e+03      21      37 ..      12      28 ..       4      30 .. 0.83
   2 !   12.9   7.1   1.6e-05      0.14       4      45 ..     158     201 ..     155     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.16
                -.EEEB---EEEETTEE CS
       CHORD 21 aeCtyHpgapvfheglk 37
                +eC + +g+pv + +lk
  CDO71252.1 12 TECLHQSGVPVLRAMLK 28
                56*********998887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.6e-05
                 -SBTT--EE-STT--TT-.EEEB---E....EEETTEEEETTTTEE CS
       CHORD   4 knkGCgkkfeeeeneeeaeCtyHpgap....vfheglkgWsCCkkk 45 
                 ++  Cg++f  +++e++++C+yH g+p    v  e+ + ++CC + 
  CDO71252.1 158 ER--CGQRFIVKRRENADHCRYHWGKPysskVNGEKRRVYTCCART 201
                 44..99***9988888889******9922223456669*****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3646.85
//
Query:       CDO71253.1  [L=162]
Description: hypothetical protein BN946_scf184908.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-57  192.2   4.7    4.4e-57  192.0   4.7    1.0  1  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
       0.14   11.6   0.7        1.1    8.6   0.1    2.0  2  DUF1204         Protein of unknown function (DUF1204)


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   4.7   4.9e-61   4.4e-57       1     140 [.       1     140 [.       1     142 [. 0.98

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 4.9e-61
                     -EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHC CS
  Clat_adaptor_s   1 mikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyf 95 
                     mi+++l+++++gkvrlak+y+++++k k+k++++v++lv+aR + ++n++e++d+kv+Y+ryasL+Fv+++++ +nel++le+ih++ve+Ld+yf
      CDO71253.1   1 MINYMLLVSRQGKVRLAKWYVTMSQKAKAKIVKDVTQLVLARRTRMCNFLEYKDTKVVYRRYASLFFVCGISQGDNELVVLEVIHRYVEVLDRYF 95 
                     89********************************************************************************************* PP

                     TS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHH CS
  Clat_adaptor_s  96 gnVceldlvfnfekvylildEivsgGeiletskkevlkrvelldk 140
                     gnVceldl+fnf+k y+ildE++++Ge++e+skk+vl+ v+++d+
      CDO71253.1  96 GNVCELDLIFNFQKAYAILDELIIAGELQESSKKSVLRVVTQADS 140
                     ****************************************99987 PP

>> DUF1204  Protein of unknown function (DUF1204)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.016   1.4e+02      71     127 ..      21      79 ..       8     102 .. 0.76
   2 ?    8.6   0.1   0.00012       1.1     121     152 ..     112     143 ..     103     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.016
     DUF1204  71 ekyaefvrrkalikvaelvqkrldrvkahld..dkkkiePkfleynqvsGnvklleelv 127
                    ++  + k ++ v++lv +r  r+   l+  d+k +  ++     v+G  +  +elv
  CDO71253.1  21 VTMSQKAKAKIVKDVTQLVLARRTRMCNFLEykDTKVVYRRYASLFFVCGISQGDNELV 79 
                 45556667778889999999999999998854488888888888888888766666665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00012
     DUF1204 121 klleelveaGeveiksdelmlrlvadaeelka 152
                 ++l+el+ aGe++  s++ +lr+v+ a+ ++ 
  CDO71253.1 112 AILDELIIAGELQESSKKSVLRVVTQADSIEE 143
                 79*************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1189.09
//
Query:       CDO71254.1  [L=417]
Description: hypothetical protein BN946_scf184908.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2862.60
//
Query:       CDO71255.1  [L=374]
Description: hypothetical protein BN946_scf184908.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-79  265.4   0.0    9.4e-79  265.1   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.1   0.0   5.2e-83   9.4e-79       1     348 []      43     369 ..      43     369 .. 0.95

  Alignments for each domain:
  == domain 1  score: 265.1 bits;  conditional E-value: 5.2e-83
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS.SSSSSHHHHHHHHHHHTTEEEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk.ekevrpengLlaLrkeldlfanl 98 
                 +++l++gdgiG+e++++++++++ ++  a+  +e+e+++v+g + +  ge l ++++e++++++v l+g + tp  ++++ + n  +a+r++ld++a +
  CDO71255.1  43 TVTLIPGDGIGNEITDSVKEIFEYVN--AP--IEWEQYNVSGMSSE--GEELFKQAMESLRRNRVGLKGILFTPIsQSGHISWN--VAMRQQLDIYASV 133
                 589***********************..55..9********98765..69*************************889999999..************* PP

                 EEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HH CS
      Iso_dh  99 rpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lw 196
                   +k+++      p ++   ++vd+ i+Re+t+g Y+g e++         v+ ++k+ +++  eri r+af+ Alk+++kkvt+v+Kan++k  + l+
  CDO71255.1 134 VLCKSLP----GFPTRH---NNVDFAIIRENTEGEYSGLEHQSYPG-----VVESLKVSTRAKAERICRFAFDFALKNNRKKVTCVHKANIMKLGDgLF 220
                 ******3....445554...57**********************97.....899999999999************************************ PP

                 HHHHHHHHCC.TTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEE.SS---CCCTTSS-S-THHH CS
      Iso_dh 197 rkiveevaee.eypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEa.vHGsapdiagkdkaNpiav 293
                  +++ +vae+ +  +ie ++++vD++ mqlv +p+qfdV+v++Nl+G i+S   aalvG+ G++p+ ++g ++ a+fE+ +   a di g + aNp a+
  CDO71255.1 221 LNTFRRVAEDyKTTGIEHNDMIVDNTSMQLVARPSQFDVMVMPNLYGAIVSNIGAALVGGPGIVPGCNVG-REYALFEPgCRHVAKDIMGTNRANPAAM 318
                 ********9878899*******************************************************.79*****9777899************** PP

                 HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 294 ilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                 ilSa++mLr+ lgl++ A++i +A  +v++a +++T+D++g+a    +tsef+ av
  CDO71255.1 319 ILSATMMLRH-LGLDHLANNIASATFDVINAgKVRTADMGGSA----TTSEFTAAV 369
                 **********.********************899*********....999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2613.53
//
Query:       CDO71256.1  [L=550]
Description: hypothetical protein BN946_scf184908.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3978.00
//
Query:       CDO71257.1  [L=509]
Description: hypothetical protein BN946_scf184908.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-39  134.5   8.2    5.3e-24   85.5   0.5    3.0  2  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.5     3e-28   5.3e-24      62     286 ..      25     268 ..       8     269 .. 0.79
   2 !   49.7   1.8   2.4e-17   4.4e-13       1     197 [.     318     503 ..     318     509 .] 0.74

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 3e-28
                   HHHHHHHHHHHHHHHHH.HHCTTCBECEEEC.TSSHCHHHHHHHHHHHHTTECEEEEESSTT....TCCTTTCGGHHHHHHHHHHHT-EEEEE.... CS
  Amidohydro_2  62 vaalcrgannrvlaeaa.krpdrfvggaavv.pldpedaaaeleraveelgfkGvrlnphvg....gddllgdrldrpifealeelglpvdihtGps 152
                   + +++ + +n+ +ae++ ++p+ f+++a+++ + d + a+ae+ +a++ l++ G+ +++++g     ++  +d++d  ++e l ++ ++v++h G +
    CDO71257.1  25 QNREAARHFNEHAAEICrEHPGKFGFFACLPnLKDTDGALAEIGHALDYLKAWGIAMSSSYGeaadAKYIGDDMFD-SVWEELDRRAAVVFLH-GNQ 119
                   55666666677666666269***********5555788***********************866657888888888.****************.555 PP

                   ............CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHH.......SSEEECCHHCH CS
  Amidohydro_2 153 ............pewlfggpqettraiqplllsgvarkfPnlkivlaHgGgpserlraalellarrpnvyvklsglyte.......llyfdspladp 230
                               +  +   p+et+ a   l + g  r+fPn+ki+laH+Gg  + l+  ++ l+r+ +    ls+   e       ++y d +l   
    CDO71257.1 120 ipsstpyphpflGIPVTEVPNETFKAAAHLVVTGKKRRFPNVKIILAHLGGSTPFLAPRVAVLSRHMGCT--LSH---EeivedfkTFYYDLALGSH 211
                   8999999999998888899999******************************555555555555555544..333...3565556644444444444 PP

                   HH.HHHHHHHH-GGGEEEE--BTSTTS..TSCTTHHHHCHHHHHSSHHHHHHHHTHHHH CS
  Amidohydro_2 231 pa.larlieavgpdrilfGsDyPhptl..eaepealalldlvallsdeerekilggNAa 286
                   ++ l +  + vg+dr+lfG+D+P ++     ++++ a+++  +  + ++++k+++ NA+
    CDO71257.1 212 EItLTAMRAFVGEDRLLFGTDFPAVSIemAGWYTRNADAFFSD--DRDALQKVMYQNAR 268
                   4469999****************98762256677777777666..*************8 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 2.4e-17
                   EEEEEEE..SHHHCCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHHHHHHHHHHHHHHHHCTTCBECEEEC.TSSHC CS
  Amidohydro_2   1 iDvHaHllppeaairddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaalcrgannrvlaeaakrpdrfvggaavv.pldpe 96 
                   iDvH+H +          +  ++ pe+ +a+m++ g+ +  +s+ +  +      +a+  ++           +  + ++pdrf+++a ++ ++  e
    CDO71257.1 318 IDVHHHNF----------PNMPWTPEKSIAAMDELGIEMAILSLPDGWPGA----VAYNRKT-----------AQICNEHPDRFGFSASLPdLRQTE 389
                   89999944..........466888888888888888888833333322222....3444444...........566689************55558* PP

                   HHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE.................CHHHCHHHHHHHHHHHHHHHCCHH.HHC CS
  Amidohydro_2  97 daaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGps.............pewlfggpqettraiqplllsgva.rkf 179
                   +aa++l+ a++el + +v +++++g +++ +++    ++e l ++ ++v++h + +              + + + p   +r++ p+ ++g+  +k+
    CDO71257.1 390 AAAKQLIYALDELHANAVSMSSSYGDGPHASQPAR--VWEELDRRAAVVFLHGA-QtpsydaqpspllgVPVTEVSPYKNQRYVKPVFCDGAHeHKY 483
                   *******************************9999..***************33.3699999954444444444444445555666666655589** PP

                   TTSEEEESGGGTT..TTCHH CS
  Amidohydro_2 180 PnlkivlaHgGgp..serlr 197
                   Pn+kivlaH+Gg+  + + r
    CDO71257.1 484 PNVKIVLAHLGGNtiWLAPR 503
                   *************4433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3817.21
//
Query:       CDO71258.1  [L=260]
Description: hypothetical protein BN946_scf184908.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-36  124.8   0.0    3.8e-36  124.4   0.0    1.1  1  adh_short       short chain dehydrogenase
    9.9e-30  103.8   0.0    1.3e-29  103.4   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.1e-12   48.2   0.0    2.2e-12   47.3   0.0    1.5  1  KR              KR domain
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.24   11.3   0.0    1.8  1  NAD_binding_10  NAD(P)H-binding
       0.18   11.2   0.0        1.4    8.3   0.0    2.1  1  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0     1e-39   3.8e-36       2     181 ..       6     186 ..       5     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 1e-39
                 EEEEESTTSHHHHHHHHHHHHT.T-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S...S--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelake.GakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi...tgsgpfsel 96 
                 vv+ tGas+G+G+aiak l++  +a+vv+++r++ +  e+ + ++++++++l++++Dvtd ++v+  v++  +k++++d L+ NAG+    g+ + +++
  CDO71258.1   6 VVVLTGASKGLGLAIAKILLETfNANVVALSRTKTP--ELSSLVEAHSESLLTFECDVTDGAAVRSSVSRGLEKYKRIDGLILNAGVlepLGKIASEDI 102
                 89****************998747777778888665..566667777899*************************************98877888999* PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS CS
   adh_short  97 seeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGl 181
                 s ++w+r ++vN+++++ ++ra +p++  +  +GrIv+vsS a+    +++ +Y A Kaa+++l r+la e  +  ++v++ a G+
  CDO71258.1 103 SIDQWKRHFDVNFFSLVTAIRATIPELRkSPLGGRIVFVSSGAATGNTPSWGPYNAGKAAMNSLCRTLAAEEPD--VTVSSSAQGY 186
                 **************************9956679*************************************9876..6777666665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   3.6e-33   1.3e-29       1     227 [.      11     247 ..      11     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 3.6e-33
                   TTTTSHHHHHHHHHHH.TT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalae.eGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk.lkgpfletsre 93 
                   Ga +g+G aiAk l e   a+vv+  + +    ++ +l+e++++++  +ecDVtd ++v++ v++  ek++++D+l+ nag+ ++  k   +++s +
    CDO71258.1  11 GASKGLGLAIAKILLEtFNANVVALSRTKTP--ELSSLVEAHSESLltFECDVTDGAAVRSSVSRGLEKYKRIDGLILNAGVLEPlGKIASEDISID 105
                   899*********8766269999999888887..799999999999447*************************************87888899**** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT... CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg... 184
                   +++r +dvn+ sl+  ++a +p ++++   g+iv +ss +a+  +p+   y+a Kaa+++l+r+lA+e  +  ++v + ++g+   + ++g+ +   
    CDO71258.1 106 QWKRHFDVNFFSLVTAIRATIPELRKSplgGRIVFVSSGAATGNTPSWGPYNAGKAAMNSLCRTLAAEEPD--VTVSSSAQGYRVAPQMQGLLRdkg 200
                   **********************66665588************************************99544..666666666666666666544333 PP

                   ....HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
  adh_short_C2 185 ....fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                         e+l+++ + +  g+l++pe+ +++++ L  ++ ++ +Gq +
    CDO71258.1 201 psvmDAEVLKKFTSAYEKGELVKPEDAGHVIAALSLKAPKALSGQFV 247
                   44445789***************************999999999966 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   6.1e-16   2.2e-12       3     167 ..       7     174 ..       5     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 6.1e-16
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------...---TT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr...dklle 98 
                 +++tG+  gLGl++a+ l+e  ++++v lsR+  ++++   l + +ea+  +  ++++Dv+d +av++ +++  ++ ++i G i  Agvl+   + + e
  CDO71258.1   7 VVLTGASKGLGLAIAKILLETFNANVVALSRT--KTPE---LSSLVEAHSESLLTFECDVTDGAAVRSSVSRGLEKYKRIDGLILNAGVLEplgKIASE 100
                 689*****************************..4444...44555677779999**********************************9864456778 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT....S--S.EEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHH CS
          KR  99 emtaedleqvlapKvkGawnLhelled....esld.ffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqg 167
                 + + +++++ +   +  +    +++ +    ++l   +v++SS a++  ++  + Y a+ a +++l+++ ++++
  CDO71258.1 101 DISIDQWKRHFDVNFFSLVTAIRATIPelrkSPLGgRIVFVSSGAATGNTPSWGPYNAGKAAMNSLCRTLAAEE 174
                 8999*****99988655544433333224437775267888888888888999**************9887765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.6e-05      0.24       1      59 [.      11      72 ..      11     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHH.HCHH.HHCT.TTCEEEE--TT-CCHHHHHHT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpe.klae.leae.eglevvegdvtdvedlaealk 59
                    GA+ + G +++k ll+  + +v+al R++  +l++ +ea+ e l ++e dvtd +++++ ++
      CDO71258.1 11 GASKGLGLAIAKILLETFNANVVALSRTKTpELSSlVEAHsESLLTFECDVTDGAAVRSSVS 72
                    9***************99*********853244441555558889999*****999998765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0004       1.4       2     154 ..       8     168 ..       7     183 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0004
                 EEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S--...-HHHHHHSHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg.yevigldrlssasntarledl....elveldltdrsalerlfke....e.qpdavihlAavg...gvaassedpadf 87 
                 ++tGa+  +G a++k lle    +v++l+r ++ + +++ e         e+d+td++a++  +++    + ++d  i+ A+v    g  as +   d 
  CDO71258.1   8 VLTGASKGLGLAIAKILLETFnANVVALSRTKTPELSSLVEAHseslLTFECDVTDGAAVRSSVSRglekYkRIDGLILNAGVLeplGKIASEDISIDQ 106
                 789999999999999999987566999999977666665555489888899*****9977765542111144677666666633011333455555566 PP

                 HHHHTHHH.HHHHHHHHHHTCT........EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHH CS
   Epimerase  88 ieknlqgt.lnlleaarkagvk........rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklve 154
                 +++++ ++   l+ a+r++ ++        r++f+sS +  G+ ++                pY a K+a+ +l++
  CDO71258.1 107 WKRHFDVNfFSLVTAIRATIPElrksplggRIVFVSSGAATGNTPS--------------WGPYNAGKAAMNSLCR 168
                 6666655423566666644222223444456666666555553332..............3455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1822.49
//
Query:       CDO71259.1  [L=367]
Description: hypothetical protein BN946_scf184908.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-47  160.5   0.1    6.3e-47  159.5   0.0    1.5  2  Transket_pyr     Transketolase, pyrimidine binding domain
    4.2e-41  139.7   0.3      1e-40  138.5   0.3    1.7  1  Transketolase_C  Transketolase, C-terminal domain
     0.0014   18.9   0.1     0.0034   17.7   0.1    1.7  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.0   1.1e-50   6.3e-47       2     175 ..      38     212 ..      37     214 .. 0.98
   2 ?   -3.9   0.0       1.5   9.3e+03      54      71 ..     296     313 ..     291     325 .. 0.58

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 1.1e-50
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadq 94 
                   ++++r+a++ a++e++ +d++v++ig++va  +g ++v+kgll+++ge+rvid++i+E +++g a+Gaa+ g l++i+e++ ++Fa++A  qi++++
    CDO71259.1  38 TMTVREALNAAMEEEMLRDENVFVIGEEVAryNGAYKVTKGLLDKFGEKRVIDTPITEMGFAGLAIGAAFGG-LRPICEFMTFNFAMQAidQIVNSA 133
                   6899**************************999***************************************.9*********************** PP

                   HHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEE CS
  Transket_pyr  95 airsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksll 175
                    +++++++g l++++v+r p g+    ++++s+   a++  +pglkvv P +++++k+ll+ air  d++Pvv+++++  +
    CDO71259.1 134 GKTHYMSGGVLPCPIVFRGPNGAAAGVAAQHSQDYAAWYGQVPGLKVVSPWSAEDCKGLLKSAIR--DPNPVVFLENELMY 212
                   *****************************************************************..99******998766 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
                   -S-HHHHHHHHHHHHHHC CS
  Transket_pyr  54 gisEqavlgfavGaalag 71 
                    ++E ++ +f vG  ++ 
    CDO71259.1 296 VVAEGGFPAFGVGSEICA 313
                   456666666666655544 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.3   1.7e-44     1e-40       1     121 [.     232     352 ..     232     355 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 1.7e-44
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHH.CCCTTCS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalae.eafdgld 93 
                      gka+++reg+dvt+va ++mv +++eAaeeL+kegi+aeV++lr+++plD  ti +svkkt+rlvv e + + +G+gse++a++ e eafd+ld
       CDO71259.1 232 GKAKVEREGSDVTIVAHSKMVGHSMEAAEELAKEGIKAEVINLRSIRPLDITTIVKSVKKTNRLVVAEGGFPAFGVGSEICAQIVEgEAFDYLD 325
                      89******************************************************************************************** PP

                      SEEEEEEE-SSSSSSGHHHHHHHTT-SH CS
  Transketolase_C  94 apvkrvggpdviepgsaeelekafglda 121
                      apv+rv+g dv++p++  +le+++ +d+
       CDO71259.1 326 APVERVTGADVPTPYA-VNLENLTFPDT 352
                      ***************9.99**9999985 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   5.7e-07    0.0034       2      60 ..     242     300 ..     241     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.7e-07
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE- CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldr 60 
                 +v iva+  ++g   +a++el +egik+ ++ lr++rP     + + +kk++++vv + 
  CDO71259.1 242 DVTIVAHSKMVGHSMEAAEELAKEGIKAEVINLRSIRPLDITTIVKSVKKTNRLVVAEG 300
                 899****************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2586.54
//
Query:       CDO71260.1  [L=780]
Description: hypothetical protein BN946_scf184908.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.4e-117  391.5   8.6    6.3e-54  183.5   3.0    3.2  3  Histidinol_dh  Histidinol dehydrogenase
    9.5e-25   86.2   0.1    2.2e-24   85.1   0.0    1.6  2  PRA-CH         Phosphoribosyl-AMP cyclohydrolase
    2.7e-11   43.8   0.7    4.2e-11   43.1   0.1    1.7  2  PRA-PH         Phosphoribosyl-ATP pyrophosphohydrolase
     0.0062   16.7   0.0      0.014   15.5   0.0    1.6  1  MazG           MazG nucleotide pyrophosphohydrolase domain


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   4.7e-18   2.1e-14       2      87 ..     443     526 ..     442     538 .. 0.86
   2 !  183.5   3.0   1.4e-57   6.3e-54     134     248 ..     541     660 ..     537     662 .. 0.96
   3 !  159.1   0.0   3.7e-50   1.7e-46     294     409 .]     658     773 ..     657     773 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 4.7e-18
                    -------HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----E CS
  Histidinol_dh   2 krseedseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkesee 87 
                    +r+  +s+e+ ++vk+i++dvr++Gd+alle+t+kFD+++ l s +v +  ++  + ++ +++++a+++a++ni kfh+aq e+ +
     CDO71260.1 443 RRPVLKSDEMIAKVKPIVDDVRARGDAALLELTAKFDRAQ-L-SSTVVRPPFAPETMEIADDVRAAIDTAYANIYKFHKAQAEQGS 526
                    688999*******************************775.2.34566668899999************************98533 PP

  == domain 2  score: 183.5 bits;  conditional E-value: 1.4e-57
                    T-SEEEEEE-SS.GG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---SHHHHHHHHHHCTT....BEES----S-EEEEEE CS
  Histidinol_dh 134 gvkeivvvtPpq.dgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGniyVaaAKrlvsge....vgiDmiaGPsEvlvia 224
                     +keiv++tPp+ dg+++p+v+++akl+g+++i+k+GGaqA+aalAyGte++pkvdki+GPGn++V+aAK+lv+++    v+ Dm+aGPsEvlvia
     CDO71260.1 541 XCKEIVLATPPRpDGSISPEVMYVAKLVGASAILKAGGAQAVAALAYGTETVPKVDKIFGPGNQWVTAAKMLVQNDtdalVATDMPAGPSEVLVIA 636
                    59***********************************************************************6555678**************** PP

                    -TTS-HHHHHHHHHHHHTT-TT-E CS
  Histidinol_dh 225 DetadpefvAaDLlsqaEHdedaq 248
                    D+t +p+fvAaDLlsqaEH+ d+q
     CDO71260.1 637 DHTGNPAFVAADLLSQAEHGVDSQ 660
                    **********************98 PP

  == domain 3  score: 159.1 bits;  conditional E-value: 3.7e-50
                    SHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHHHHHHHHHH CS
  Histidinol_dh 294 dleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskealkelaeav 389
                    d +eai+++n+yApEHl+l++e++ ++++ ++naG++f+G+yspes+gDYa+Gtnh+LPT+g+Ar++sg+++ +F+k+i+ qe+++e+lk l++ v
     CDO71260.1 658 DSQEAIAFSNDYAPEHLILHLENAPQVVPAVENAGSVFVGPYSPESCGDYASGTNHTLPTNGYARQFSGVNTLSFQKHITSQEVTAEGLKGLGPVV 753
                    5689******************************************************************************************** PP

                    HHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 390 etlAeaEgLeaHaeavkvRl 409
                    +tlA++EgL aHa+av++Rl
     CDO71260.1 754 ATLADCEGLGAHANAVRIRL 773
                    ******************96 PP

>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   4.9e-28   2.2e-24       2      73 ..     216     287 ..     215     288 .. 0.96
   2 ?   -4.1   0.0       3.3   1.5e+04      43      57 ..     609     623 ..     605     630 .. 0.74

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 4.9e-28
                 EEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS.-SSTTSBSSS- CS
      PRA-CH   2 laymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkg.aaCHtgkesCF 73 
                 l+y++ e+++++++tgk vy+Sr++  lW+KGetSg++q+v +ir+DcD+Dal ++v q+g  +CH++++sCF
  CDO71260.1 216 LVYSSIESVRESIATGKGVYQSRKH-GLWRKGETSGATQDVISIRIDCDSDALEFSVVQHGaGFCHLDRPSCF 287
                 68*********************98.9*********************************945********** PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.3
                 EEEEE-TTSSEEEEE CS
      PRA-CH  43 keirlDcDqDalllk 57 
                  ++ +  D Dal+++
  CDO71260.1 609 AKMLVQNDTDALVAT 623
                 567888899999876 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.1   9.4e-15   4.2e-11       2      81 ..     294     374 ..     293     376 .. 0.94
   2 ?   -4.1   0.1         4   1.8e+04      51      61 ..     503     513 ..     497     519 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 9.4e-15
                 HHHHHHCT----SS----.-HHHHHH...HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHHH CS
      PRA-PH   2 kefhrligerkpetPeas.taelasl...raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfeevhr 81 
                   ++r+++ r +++Pe+s t +l+++   ++ +i+EEa+El+ a    ++ ++a e+aDllY+++  + ++G+++ ++ +++++
  CDO71260.1 294 AALERILKSRLASAPEGSyTRKLFNDpelLRSKIMEEADELCRAR---TKDDVAFEAADLLYFALTRCIAAGVHIIDIERSLDK 374
                 5799*****************************************...8*************************9999988876 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 4
                 HHHHHHHHHHH CS
      PRA-PH  51 adelaDllYvt 61 
                 +++++D+ Y  
  CDO71260.1 503 VRAAIDTAYAN 513
                 78999999975 PP

>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.2e-06     0.014       3      69 ..     320     382 ..     318     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
        MazG   3 petllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerR 69 
                 pe l   ++eE++E+++a  k+   +++ E +D+L+ +l  +  a+    id+e+ +++  +K++rR
  CDO71260.1 320 PELLRSKIMEEADELCRARTKD---DVAFEAADLLYFALTRCI-AAGVHIIDIERSLDKKAKKVTRR 382
                 788999***********96655...59********99998886.788999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4922.33
//
Query:       CDO71261.1  [L=793]
Description: hypothetical protein BN946_scf184908.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-73  245.9   0.0    8.2e-57  192.7   0.0    2.2  2  Piwi      Piwi domain
      1e-18   68.2   0.0    1.9e-18   67.4   0.0    1.5  1  ArgoN     N-terminal domain of argonaute
    1.5e-15   56.6   0.1    6.6e-15   54.5   0.1    2.1  2  ArgoL1    Argonaute linker 1 domain
    1.3e-14   54.2   0.0    3.3e-14   52.9   0.0    1.7  1  ArgoMid   Mid domain of argonaute
    1.1e-09   38.4   0.1    2.6e-09   37.3   0.1    1.7  1  ArgoL2    Argonaute linker 2 domain
    3.7e-09   36.5   0.0    6.5e-09   35.7   0.0    1.3  1  PAZ       PAZ domain


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.0   2.7e-60   8.2e-57       1     228 [.     464     696 ..     464     697 .. 0.89
   2 !   51.4   0.2     3e-17   8.9e-14     250     301 ..     697     748 ..     696     749 .. 0.97

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 2.7e-60
                 EEEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS-EEESSSTTSSE........EEEEEEEEEECCCSCCC CS
        Piwi   1 lilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgknvliveikleldv....sptliiGidishgtagtvdnp 95 
                 li+ ++pe + d y+ +k   +   g+ +qc+++ +  +   k+q+ +nv+lkinvKlGg+n  i++++   ++    +pt+++G+d++h++ g +d+p
  CDO71261.1 464 LIVAVMPEASADLYMRVKHFGDITQGVATQCLRSMKCTRA--KPQYFANVCLKINVKLGGIN-TIPDARSVGALtdphNPTIVMGADVMHPAPGASDRP 559
                 699**********************************999..89*****************7.455555434446789********************* PP

                 EEEEEEEEEETSSEEEEEEEEESSCCCCHHHHHHHHHHHHHHHHH...H..TTTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHHHHCTTTEE CS
        Piwi  96 svaavvasldkensrylaevstqassqelleklkeiikellrefk...k..sskkkkperiivyRdGvseGqfkqvlnsEvkelkealkklkeqyqpkl 189
                 s+ a+v ++d + ++y+a+++ q ++qe++++l+e+   +++ ++   +  ++k ++p+rii+yRdGvseG+f qvl++E+++lk+a+   +   q k+
  CDO71261.1 560 SYTALVGNVDSDTAKYIADCRAQTTRQEMIADLEEMATAVIKMYQgyrTgvEKKPGNPKRIIFYRDGVSEGEFAQVLQYELPQLKRACAASG--VQAKI 656
                 *********************************9976666666652223223344589******************************9988..6778* PP

                 EEEEEECSCS--EEESESTC.CCEETTTCEEETTEEEEEE CS
        Piwi 190 tvivvqkrhhtrfFasdkae.ksqnippGtvvdkkitlpe 228
                 t ivv krhh rfF+s++   +s n p Gtvvdk+i +p+
  CDO71261.1 657 TIIVVGKRHHVRFFPSQSDAdRSGNCPAGTVVDKEIGHPT 696
                 **************98765459**************9997 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 3e-17
                 EEEEES..S-CCHHHHHHHHHCTGGTTTTSS-SS-HHHHHHHHHHHHHHTCC CS
        Piwi 250 tvlvdeaklsadelqsltyklchmyqrstrsvsiPapvyyAhklAkrvrnnl 301
                  vl+de+++++d+lq l + lch+y+rstrsvsiPapvyyA+ +  r++n++
  CDO71261.1 697 DVLYDENNFTPDSLQALSFALCHVYARSTRSVSIPAPVYYADIVCSRAKNHY 748
                 59**********************************************9987 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   6.4e-22   1.9e-18      38     138 .]       2     110 ..       1     110 [. 0.82

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 6.4e-22
       ArgoN  38 riiellleeykkselagkkpayDgrknlysakkLp......kefe.dl..paaeesakkepsekrrrksrtfkvtikfaksinlqsLleylrgkq..de 125
                 +ii++l+   +++ + + +++yDgrkn+++a++Lp      +efe +l  p ++++a +  +++r++k  ++kv+++++ +in++ L ++lrgkq  d+
  CDO71261.1   2 EIIKRLQGVTAPQ-IFTPRAVYDGRKNMFAARELPfgaaqaHEFEvTLvdPPSPGEAARAGGAGRPPK--VYKVKLTHVATINPEVLSRFLRGKQshDN 97 
                 5788888555544.55559*****************************95323333333444556666..*********88**************9*** PP

       ArgoN 126 asleaiqaLdivl 138
                 ++l+ai+aL++v+
  CDO71261.1  98 TVLTAITALNVVI 110
                 ***********96 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   2.2e-18   6.6e-15       4      52 .]     123     168 ..     122     168 .. 0.94
   2 ?   -2.3   0.0       1.2   3.7e+03      23      32 ..     409     418 ..     398     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.2e-18
      ArgoL1   4 rsFfsppskqrvdLggggleawrGfyqSvRptqggLllNvDvsntaFyk 52 
                 rsFf++   +++d  g+g+++wrG++qS+Rp+ g++l+N+D+s++++yk
  CDO71261.1 123 RSFFTDR--EQRDT-GSGVVLWRGYFQSIRPAIGRMLINLDISTGMMYK 168
                 9****99..56889.77******************************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
      ArgoL1  23 eawrGfyqSv 32 
                 e++rG  qS+
  CDO71261.1 409 EMVRGLLQSF 418
                 899*****97 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.1e-17   3.3e-14       2      81 ..     370     448 ..     369     450 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.1e-17
     ArgoMid   2 prnGsWdmrgkqFlepkakikkWAilcfasqrkvkenkledfikqlvkiskdvgisleekpeirkyadderevetlfkdl 81 
                 pr+G+W++ +k+F +p ++i+ W +++f+ q++++ +  e++++ l++   +vgi++ e ++i+k+a+ +++v + ++ l
  CDO71261.1 370 PRDGAWNLIDKKFIKP-VTINRWCVAVFERQSRFRPDLAEEMVRGLLQSFASVGITVHETDPIIKWANSNDQVASFLRAL 448
                 9***************.*********************************************************999876 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   8.6e-13   2.6e-09       1      47 []     311     359 ..     311     359 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 8.6e-13
      ArgoL2   1 eRkksIlegvkvlgydddpylrafGisidpq..mttVpGRvLppPtlkY 47 
                 eR++sI++g++vl y++++ylr+f + ++p+  ++   +RvL pP l+Y
  CDO71261.1 311 ERMQSIRAGLDVLAYGQSEYLRNFNMIVEPNaaPVSLTARVLDPPVLQY 359
                 8*****************************7779999***********9 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.2e-12   6.5e-09      20     126 ..     195     293 ..     183     301 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.2e-12
                 --HHCCCCTTBEEEETTTTS-.....CEEEEEEEESS--TTSEECCTTCT..CECCHHHHCCT---ST-TT--EEEEEES-SS----EEEEE-CCCCEE CS
         PAZ  20 rkkaaealkgliVmtwynnrn.....ktyyvadittdlapsstFpdkdkeneitfaeYfkkkYnieikdqdqplldvdkktesehssqkqiLvpElcdi 113
                 r k ++ l gl+++++  +++         v +++ + a++s F ++++  ++ +a+Yf++ Yn++++  ++p+++v+k           ++++E c+i
  CDO71261.1 195 RIKLQRFLAGLRIIVEIPGQRpparrTPRVVRRLSANGASESWFMKDETR-RMNVAQYFQETYNYTVRYPNIPCVEVGK---------SALIPMECCTI 283
                 55666677777777776662234442445678999999******999875.9***************9999********.........79********* PP

                 ESSBCCCCCTCCC CS
         PAZ 114 hpisasqrykkkl 126
                     a+q   k++
  CDO71261.1 284 ---FAGQIMRKQI 293
                 ...8888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5347.51
//
Query:       CDO71262.1  [L=907]
Description: hypothetical protein BN946_scf184908.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-78  263.6   0.0    6.1e-78  262.1   0.0    1.7  1  Piwi      Piwi domain
    1.9e-30  106.2   0.0    3.3e-30  105.5   0.0    1.4  1  ArgoN     N-terminal domain of argonaute
    6.7e-17   60.9   0.1    3.4e-16   58.6   0.0    2.2  2  ArgoL1    Argonaute linker 1 domain
    8.2e-16   58.0   0.0    2.4e-15   56.6   0.0    1.8  1  ArgoMid   Mid domain of argonaute
    3.7e-10   40.0   0.1    8.9e-10   38.8   0.1    1.7  1  ArgoL2    Argonaute linker 2 domain
    3.4e-09   36.6   0.0    6.1e-09   35.8   0.0    1.3  1  PAZ       PAZ domain


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.1   0.0     2e-81   6.1e-78       1     301 [.     572     862 ..     572     863 .. 0.91

  Alignments for each domain:
  == domain 1  score: 262.1 bits;  conditional E-value: 2e-81
                 EEEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS-EEESSSTTSSE.........EEEEEEEEEECCCSCC CS
        Piwi   1 lilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgknvliveikleldv.....sptliiGidishgtagtvdn 94 
                 li+ i+pe + d y+ +k   +   g+ +qc+++++  +   k+q+ +nv+lkinvKlGg+n +    +    v     +pt+++G+d++h++ g +++
  CDO71262.1 572 LIVAIMPEASADLYMRVKHFGDITQGVATQCLKSSKCTRA--KPQYFANVCLKINVKLGGINTVPDSRSVP--VltdphNPTIVMGADVIHPAPGADGR 666
                 699**********************************999..89*****************8433333333..335789******************** PP

                 CEEEEEEEEEETSSEEEEEEEEESSCCCCHHHHHHHHHHHHHHHHH.....HTTTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHHHHCTTTE CS
        Piwi  95 psvaavvasldkensrylaevstqassqelleklkeiikellrefk.....ksskkkkperiivyRdGvseGqfkqvlnsEvkelkealkklkeqyqpk 188
                 ps  a+v ++d + ++y+a++++q s+qe++++l+e+   ++r ++      ++k ++p+rii+yRdGvseGqf  vl++E+++lk+a+   +   q k
  CDO71262.1 667 PSFTALVGNVDSDTAKYIADCRVQTSRQEMIDDLEEMATAMIRMYQgyrtgVEKKPGNPKRIIFYRDGVSEGQFAHVLDYELPQLKRACAAAG--VQAK 763
                 ************************************88888887773323313344589*******************************999..6678 PP

                 EEEEEEECSCS--EEESESTC.CCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES..S-CCHHHHHHHHHCTGGTTTTSS-SS-HH CS
        Piwi 189 ltvivvqkrhhtrfFasdkae.ksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdeaklsadelqsltyklchmyqrstrsvsiPap 286
                 +tvivv krhh rfF+s++   +s n p Gtv+dk i++p+e+dfy                +vl+de+++++d+lq l + lch+y+rstrsvsiPap
  CDO71262.1 764 ITVIVVGKRHHVRFFPSQNDAdRSGNCPAGTVIDKDIVHPTEFDFY---------------LHVLYDENNFTPDSLQALSFALCHVYARSTRSVSIPAP 847
                 ***************9755445************************...............79************************************ PP

                 HHHHHHHHHHHHTCC CS
        Piwi 287 vyyAhklAkrvrnnl 301
                 vyyA+ +  r++n++
  CDO71262.1 848 VYYADIVCSRAKNHY 862
                 ***********9987 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   1.1e-33   3.3e-30       1     138 []      69     215 ..      69     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.1e-33
       ArgoN   1 rpiklraNyFkvtslpdktlyhYdveit...kka.krvglrriiellleeykkselagkkpayDgrknlysakkLp......kefe.dl.paaeesakk 87 
                 r+i++++N+F+v+ +p++ ++hYdv i+   k+  +r++  +ii +l++  +++ + + +++yDgrkn+++a++Lp      +efe +l + +++  + 
  CDO71262.1  69 RAIQVHTNHFEVK-IPEGHIHHYDV-ISpseKTLpARLN-MEIIARLQTVTAPQ-IFTPRAVYDGRKNMFAARELPfgpshaHEFEvTLvD-PPSPGEA 162
                 78***********.9*********9.7668766679999.*******8656555.55559*****************************96.3444444 PP

       ArgoN  88 epsekrrrksrtfkvtikfaksinlqsLleylrgkq..deasleaiqaLdivl 138
                  +++   r ++++kv+++++ +in++ L+++l+gkq  d+++l+ai+aL++v+
  CDO71262.1 163 GRGGDAGRLPKVYKVKLTHVATINPEVLARFLQGKQshDNTVLTAITALNVVI 215
                 55555667778*********88**************9**************96 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.2e-19   3.4e-16       4      52 .]     228     273 ..     227     273 .. 0.95
   2 ?   -1.3   0.0      0.59   1.8e+03      16      32 ..     513     526 ..     486     530 .. 0.65

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.2e-19
      ArgoL1   4 rsFfsppskqrvdLggggleawrGfyqSvRptqggLllNvDvsntaFyk 52 
                 rsFf++   +++++ g+g+++wrG++qSvRp+ +++l+NvD+s++a+yk
  CDO71262.1 228 RSFFTDR--EKKEI-GSGIVLWRGYFQSVRPAINRMLINVDISTGAMYK 273
                 9****99..7899*.77******************************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.59
      ArgoL1  16 dLggggleawrGfyqSv 32 
                 dL     e++rG  qS+
  CDO71262.1 513 DLA---EEMVRGLLQSF 526
                 453...49999999997 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   7.9e-19   2.4e-15       2      81 ..     478     556 ..     477     558 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 7.9e-19
     ArgoMid   2 prnGsWdmrgkqFlepkakikkWAilcfasqrkvkenkledfikqlvkiskdvgisleekpeirkyadderevetlfkdl 81 
                 pr+G+W+m +k+F++p ++i+ W +++f+ q++++ +  e++++ l++   +vgi++ e ++++k+a+ +++v + ++ l
  CDO71262.1 478 PRDGAWNMIDKKFFKP-VTINRWCVAVFERQSRFRADLAEEMVRGLLQSFASVGITVHETDPVIKWANSNDQVASFLRAL 556
                 9***************.*********************************************************999876 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1     3e-13   8.9e-10       1      47 []     419     467 ..     419     467 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3e-13
      ArgoL2   1 eRkksIlegvkvlgydddpylrafGisidpq..mttVpGRvLppPtlkY 47 
                 +R +sI++g+  l y++++y+r+fG+ ++p+  ++  ++RvL pP l+Y
  CDO71262.1 419 DRLNSIRAGLGALAYGQSEYVRQFGMIVQPNaaPVSLQARVLDPPVLQY 467
                 699***************************777***************9 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0     2e-12   6.1e-09      16     125 ..     299     400 ..     282     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2e-12
                 SS----HHCCCCTTBEEEETTTT.S-....CEEEEEEEESS--TTSEECCTTCT..CECCHHHHCCT---ST-TT--EEEEEES-SS----EEEEE-CC CS
         PAZ  16 erkdrkkaaealkgliVmtwynn.rn....ktyyvadittdlapsstFpdkdkeneitfaeYfkkkYnieikdqdqplldvdkktesehssqkqiLvpE 109
                 ++++r k ++ l g++++++  + r+        v+++t + a++ +F +++++ ++t+++Yfk+ +n++++  ++p+++v++           i+++E
  CDO71262.1 299 VSRERVKLQRFLSGVRIIVEIPGqRQtarrPARVVKRLTASGASDLSFVNREGK-QTTVEQYFKTAHNYTLRFPKLPCVEVGS---------GAIIPME 387
                 566777778888888888877664224443444688999999999******875.9***************************.........89***** PP

                 CCEEESSBCCCCCTCC CS
         PAZ 110 lcdihpisasqrykkk 125
                  c+i    ++q   k+
  CDO71262.1 388 CCTI---FEGQIMRKQ 400
                 ****...777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 5826.16
//
Query:       CDO71263.1  [L=129]
Description: hypothetical protein BN946_scf184908.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 912.88
//
Query:       CDO71264.1  [L=581]
Description: hypothetical protein BN946_scf184908.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-64  213.1   3.3    4.5e-23   81.0   0.0    3.3  3  Mito_carr  Mitochondrial carrier protein
    0.00042   19.7   0.1      0.017   14.6   0.1    2.7  2  EF-hand_1  EF hand
    0.00079   19.2   0.1       0.01   15.7   0.0    2.5  2  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
      0.012   16.1   0.1       0.06   13.8   0.1    2.2  2  EF-hand_7  EF-hand domain pair
      0.017   14.6   1.2      0.047   13.2   0.3    2.2  2  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1   2.2e-22   7.8e-19       5      95 ..     284     383 ..     281     385 .. 0.85
   2 !   63.9   0.2   2.6e-21   9.4e-18       3      94 ..     394     481 ..     392     484 .. 0.93
   3 !   81.0   0.0   1.2e-26   4.5e-23       4      93 ..     490     579 ..     487     580 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 2.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++k llaGg+agav+ ++t+P+d++K+ l t + +   +  ++         i +++ +iy e G++g++ G++ +++++ p+sa+kf++ye+ kr++ 
  CDO71264.1 284 AVKFLLAGGIAGAVSRTCTAPFDRLKIFLITRPPELGGTLLTPqaparglkaIGSAIARIYAEGGVLGFWTGNGLSVVKILPESAIKFLAYESSKRFFA 382
                 56779**************************666644443333444555566*********************************************97 PP

                 T CS
   Mito_carr  95 k 95 
                 +
  CDO71264.1 383 Q 383
                 6 PP

  == domain 2  score: 63.9 bits;  conditional E-value: 2.6e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +s ++++++Gg++g++++l ++P++++Kt+++++++ ++ +    ++++ +++++  G+r++yrGl++ l++v+p+sa+ ++++e lk  +l
  CDO71264.1 394 ISGVSRFMSGGIGGITSQLTIYPIETLKTQMMSSAGGQRRT----LREAARRVWQLGGIRAFYRGLTIGLIGVFPYSAIDMSTFEALKLAYL 481
                 566889***************************99998763....9****************************************998765 PP

  == domain 3  score: 81.0 bits;  conditional E-value: 1.2e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +vl+ l+ G+++g+v+++ ++Pl +v+trlq++++s++ +++++ildv+kk+y  +G rg+yrGllp+l +v+pa ++  v+ye+ kr l
  CDO71264.1 490 GVLALLAFGSVSGSVGATSVYPLNLVRTRLQASGSSGHPERYTGILDVVKKTYARDGWRGFYRGLLPTLAKVVPAVSISYVVYESSKRKL 579
                 6788899********************************************************************************976 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.7e-06     0.017       7      28 ..     149     170 ..     147     171 .. 0.90
   2 ?    2.0   0.0     0.051   1.8e+02      16      26 ..     195     205 ..     191     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.7e-06
                 HHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   7 refDkDgdGkIdfeEfkellkk 28 
                 +e+D Dg+G++d eE+  +l+k
  CDO71264.1 149 DELDLDGNGHLDAEELELALEK 170
                 589*************999876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.051
                 EEEHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkell 26 
                  ++f+Ef+++l
  CDO71264.1 195 AVSFKEFRDFL 205
                 69******997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.9e-06      0.01       7      28 ..     149     170 ..     143     178 .. 0.88
   2 ?    0.0   0.0       0.3   1.1e+03      15      26 ..     194     205 ..     192     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.9e-06
   EF-hand_6   7 klfDkdgdGkidaeElrkalrk 28 
                 +++D dg+G++daeEl  al k
  CDO71264.1 149 DELDLDGNGHLDAEELELALEK 170
                 679****************995 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.3
   EF-hand_6  15 GkidaeElrkal 26 
                   ++++E+r++l
  CDO71264.1 194 HAVSFKEFRDFL 205
                 5689******98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4     5e+03      59      69 ..     125     135 ..     124     136 .. 0.84
   2 ?   13.8   0.1   1.7e-05      0.06       9      69 ..     149     204 ..     142     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
   EF-hand_7  59 GvisfdEFlkl 69 
                 + +s+ EF+k+
  CDO71264.1 125 RHVSWPEFEKY 135
                 579*****997 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.7e-05
   EF-hand_7   9 kelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.DtdkdGvisfdEFlkl 69 
                 +elD dg+g+ld eel+ +l+        g kls   l +++  +  + +++ +sf EF+ +
  CDO71264.1 149 DELDLDGNGHLDAEELELALE------KAGIKLSASTLSDFITFLtSSPHSHAVSFKEFRDF 204
                 67***************8888......77888777777777777734455899999999877 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   1.3e-05     0.047       7      22 ..     150     165 ..     149     168 .. 0.90
   2 ?   -1.5   0.0       0.6   2.2e+03      16      24 ..     196     204 ..     195     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                 HH-SS-SSCE-HHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELk 22 
                 ++Dl+g G++++eEL+
  CDO71264.1 150 ELDLDGNGHLDAEELE 165
                 69*************7 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.6
                 E-HHHHHHH CS
   EF-hand_5  16 IskeELktl 24 
                 +s+ E++ +
  CDO71264.1 196 VSFKEFRDF 204
                 799***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3756.13
//
Query:       CDO71265.1  [L=453]
Description: hypothetical protein BN946_scf184908.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.012   15.7   0.9      0.012   15.7   0.9    4.2  5  JIP_LZII       JNK-interacting protein  leucine zipper II
      0.054   13.2   2.4      0.064   12.9   1.2    1.7  2  Borrelia_orfA  Borrelia ORF-A
       0.54   10.3   5.6        3.3    7.7   0.6    2.8  2  Holin_BhlA     BhlA holin family
        1.8    9.2  13.5        1.4    9.6   0.8    3.4  3  ING            Inhibitor of growth proteins N-terminal histon
        1.8    7.9  26.7        0.1   12.0  16.1    2.4  2  HMMR_N         Hyaluronan mediated motility receptor N-termin
          2    9.2  13.9        1.9    9.3   2.4    3.7  4  Occludin_ELL   Occludin homology domain
        3.4    7.0  25.3       0.25   10.7  19.1    2.1  3  DUF4407        Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.9   4.8e-06     0.012      28      66 ..       5      47 ..       4      52 .. 0.78
   2 ?   -1.6   0.1       1.2   3.1e+03      42      68 ..      55      81 ..      42      84 .. 0.64
   3 ?   -1.2   1.8      0.93   2.4e+03      53      53 ..     101     101 ..      65     141 .. 0.59
   4 ?   -3.1   0.2       3.6   9.2e+03      44      62 ..     163     181 ..     156     188 .. 0.52
   5 ?    1.6   1.0      0.13   3.2e+02      42      70 ..     215     245 ..     194     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.8e-06
    JIP_LZII 28 kddLIarvdeLtsereiLreEle....slqkakerlesrikel 66
                k  LI++vdeL +  + +r El+    +lq++++r ++r++e+
  CDO71265.1  5 KAALIQKVDELACTLTQVRVELQtrseQLQESNARYQTRVAEI 47
                789**************99999622225777777788887775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
    JIP_LZII 42 reiLreEleslqkakerlesrikelEe 68
                  +L+e + +lq + + le+ +k  E 
  CDO71265.1 55 LAVLQERNLALQRVIDLLETALKREET 81
                346777777777777777777776665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.93
    JIP_LZII  53 q 53 
                 +
  CDO71265.1 101 H 101
                 2 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.6
    JIP_LZII  44 iLreEleslqkakerlesr 62 
                  Lr  l++l++a  r   r
  CDO71265.1 163 DLRAQLTALEAADMRNTLR 181
                 3555555555555555555 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.13
    JIP_LZII  42 re..iLreEleslqkakerlesrikelEeel 70 
                 re  + r+El++  + +++++ +++ lE +l
  CDO71265.1 215 RElvASRNELRRRDNLLKEMRAKVHMLESTL 245
                 4433678999999999999999999999876 PP

>> Borrelia_orfA  Borrelia ORF-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.87   2.2e+03     217     247 ..      25      54 ..       4      90 .. 0.53
   2 ?   12.9   1.2   2.5e-05     0.064     122     253 ..     108     242 ..      77     255 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.87
  Borrelia_orfA 217 nlkkaLeeekydekkleieFlkkiyekYknK 247
                    +l++  e+ ++++ ++++  + +i  kY++ 
     CDO71265.1  25 ELQTRSEQLQESNARYQTR-VAEITGKYQQD 54 
                    3333334444455555555.55566666554 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.5e-05
  Borrelia_orfA 122 kelnknnsvkklecinniaknksneeekkksiekeqlkkyikkkkkkskkslsiln.....lnikkdikiklikiikkeeiaieikklknkqktlk 212
                    + +n+++ + +l++  n  k  s+++ ++ + e + l++     +  s + +  l+     l   +   ++   ++k  e++ +  +l++++kt++
     CDO71265.1 108 QDKNAQQLISELTDSRNRIKS-SEDFVQQREAELRDLRNQLAVAQLPSPETEAELRdlraqLTALEAADMRNTLRAKTIESRYRTGDLNEEEKTFI 202
                    344555555566655564433.34555666666666666665554444333333333345567778888888889999999999************ PP

  Borrelia_orfA 213 niLrnlkkaLeeekydekkleieFlkkiyekYknKihfiie 253
                    n+L  + +a+ e +    + e+   ++++++ + K+h++ e
     CDO71265.1 203 NSLIRTSQAIHERELVASRNELRRRDNLLKEMRAKVHML-E 242
                    **************999999999899************8.4 PP

>> Holin_BhlA  BhlA holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.015        39      31      56 ..      27      52 ..      15      72 .. 0.89
   2 ?    7.7   0.6    0.0013       3.3      35      55 ..     103     123 ..      71     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.015
  Holin_BhlA 31 ekreekqeerekkyqeiikkltekfe 56
                ++r e+++e   +yq  ++++t k++
  CDO71265.1 27 QTRSEQLQESNARYQTRVAEITGKYQ 52
                57999999****************96 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
  Holin_BhlA  35 ekqeerekkyqeiikkltekf 55 
                  +++e+ k+ q++i++lt+  
  CDO71265.1 103 ARAKEQDKNAQQLISELTDSR 123
                 4678**************965 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.8   0.00053       1.4       9      52 ..      19      65 ..      11      89 .. 0.72
   2 ?    6.7   1.4    0.0042        11      18      69 ..      89     150 ..      82     156 .. 0.87
   3 ?   -1.6   0.1       1.6   4.1e+03      15      31 ..     223     239 ..     214     255 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00053
                GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TS..S-H CS
         ING  9 venLPlelqrnltelreiDakvqellkeidskiekfl...kngslqk 52
                + ++  elq + ++l+e  a++q+ ++ei  k+++ l   ++++l+ 
  CDO71265.1 19 LTQVRVELQTRSEQLQESNARYQTRVAEITGKYQQDLavlQERNLAL 65
                5667789***************************9995553333333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH..........TS..S-HHHHHHHHHHHHHHHHHH CS
         ING  18 rnltelreiDakvqellkeidskiekfl..........kngslqknekeeelsriqeelkea 69 
                 ++   l+e+Da      ke d+++++++          k+++   +++e el++++++l  a
  CDO71265.1  89 EHSAHLQELDAAHAARAKEQDKNAQQLIseltdsrnriKSSEDFVQQREAELRDLRNQLAVA 150
                 567889**********************9999999999888899999999999999888766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHH CS
         ING  15 elqrnltelreiDakvq 31 
                 el+r+  +l+e+ akv+
  CDO71265.1 223 ELRRRDNLLKEMRAKVH 239
                 44444444444444444 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  16.1     4e-05       0.1     212     330 ..      16     135 ..       3     140 .. 0.88
   2 ?   -0.5   4.7      0.27   6.8e+02     193     282 ..     156     249 ..     134     257 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
      HMMR_N 212 lvslekekieekseteklleyieelsnvseql.ekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelvreeeekeqt 309
                   +l + ++e ++ +e+l e +++ +    ++  ky++d+a+l+e   + ++ i  L ++L+ +e++l+   ++ ++++++l++      +e+ +++q+
  CDO71265.1  16 ACTLTQVRVELQTRSEQLQESNARYQTRVAEItGKYQQDLAVLQERNLALQRVIDLLETALKREETALQVLREEHSAHLQELDAAHAARAKEQDKNAQQ 114
                 4566677788899999*******99986666659***************************************************************** PP

      HMMR_N 310 lsaEleelkeklklkeqeaqk 330
                 l +El + ++++k+ e+ +q+
  CDO71265.1 115 LISELTDSRNRIKSSEDFVQQ 135
                 *************99987665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
      HMMR_N 193 vtqknLeeskakvaqLk..eklvslekekieekseteklleyiee.lsnvseql.ekykldiaqleellkekndeiesLkssLeekeqelskqv 282
                 +t+++L++ +a++++L+  +   +l  + ie ++ t  l e+ +  +++++++     + ++ ++++ l  +++ +++++ +++  e +l ++ 
  CDO71265.1 156 ETEAELRDLRAQLTALEaaDMRNTLRAKTIESRYRTGDLNEEEKTfINSLIRTSqAIHERELVASRNELRRRDNLLKEMRAKVHMLESTLARHL 249
                 4666777777777777622233355555688888887776554331555544442345667777777777777777777777766666555555 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.019        48      37      68 ..      22      53 ..       6      77 .. 0.76
   2 ?    9.3   2.4   0.00074       1.9      32      91 ..      88     149 ..      80     151 .. 0.81
   3 ?    1.1   0.1      0.25   6.5e+02      34      68 ..     157     191 ..     154     210 .. 0.84
   4 ?   -2.0   0.0       2.5   6.3e+03      70      89 ..     226     245 ..     199     249 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.019
  Occludin_ELL 37 kfseLerelkelkegskeykkieeeilqeykk 68
                     eL+++ ++l+e++ +y+++++ei  +y++
    CDO71265.1 22 VRVELQTRSEQLQESNARYQTRVAEITGKYQQ 53
                  34567788888888889********9999986 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00074
  Occludin_ELL  32 eevskkfseLere.lkelkegskeykkieeeilqeykklkkdpeyqekkk.rceyLkekLsh 91 
                   ee s++++eL++    ++ke++k+ +++++e+ ++ +++k+++++ ++++ ++++L+++L++
    CDO71265.1  88 EEHSAHLQELDAAhAARAKEQDKNAQQLISELTDSRNRIKSSEDFVQQREaELRDLRNQLAV 149
                   67889999999651566777888******************999987765289999999975 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.25
  Occludin_ELL  34 vskkfseLerelkelkegskeykkieeeilqeykk 68 
                   +++++++L+++l +l+  + + + +++ i ++y+ 
    CDO71265.1 157 TEAELRDLRAQLTALEAADMRNTLRAKTIESRYRT 191
                   67899999999999999999999999999999985 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.5
  Occludin_ELL  70 kkdpeyqekkkrceyLkekL 89 
                   ++d+  +e++++++ L++ L
    CDO71265.1 226 RRDNLLKEMRAKVHMLESTL 245
                   22555555555555555554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  19.1   9.6e-05      0.25     118     253 ..      31     174 ..      19     186 .. 0.80
   2 ?   -0.9   0.1      0.32   8.2e+02     130     161 ..     208     250 ..     181     265 .. 0.61
   3 ?   -3.7   0.0       2.3   5.8e+03     139     167 ..     402     430 ..     376     435 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.6e-05
     DUF4407 118 eeakelkeqlaaa.......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.a 208
                 e+ +e ++++++        ++++la l++++ alq+ id +e++l+++++++q   +  +    + +a   ++ake +++++++  el++ +++++ +
  CDO71265.1  31 EQLQESNARYQTRvaeitgkYQQDLAVLQERNLALQRVIDLLETALKREETALQVLREEHSAHLQELDAAHAARAKEQDKNAQQLISELTDSRNRIKsS 129
                 3333333333333444567799****************************9999888877755556688888889999999999999999999998866 PP

     DUF4407 209 tarlaalraelaeleaerakeraasqaaaaaddGllarlealdrl 253
                 ++ +++++ael +l++++a ++  s +++a+ ++l a+l+al++ 
  CDO71265.1 130 EDFVQQREAELRDLRNQLAVAQLPSPETEAELRDLRAQLTALEAA 174
                 666788999********************************9976 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.32
     DUF4407 130 a...........ltaelaeleaqiaalqaeidaaearldalra 161
                 +           +++el++ ++ +++++a++  +e++l++  +
  CDO71265.1 208 TsqaiherelvaSRNELRRRDNLLKEMRAKVHMLESTLARHLN 250
                 2333333344446666666677777777777666666666554 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.3
     DUF4407 139 eaqiaalqaeidaaearldalraeaqkel 167
                 ea++ +l + ++  +++ ++++++a++++
  CDO71265.1 402 EADVHNLTRPLKRVRTTTARKTETADRNA 430
                 44444444444555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1616  (0.0901333); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.51
# Mc/sec: 2688.48
//
Query:       CDO71266.1  [L=301]
Description: hypothetical protein BN946_scf184908.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-06   26.9  17.1     0.0018   17.3   1.6    2.1  2  Spc7            Spc7 kinetochore protein
    0.00033   20.3   2.1    0.00033   20.3   2.1    3.1  2  Filament        Intermediate filament protein
     0.0065   16.6  16.2      0.014   15.5   4.6    2.6  2  ADIP            Afadin- and alpha -actinin-Binding
  ------ inclusion threshold ------
      0.014   15.6   7.8       0.17   12.0   0.5    2.5  2  DUF2959         Protein of unknown function (DUF2959)
      0.019   14.8  12.9        2.5    8.0   0.2    4.8  5  PKcGMP_CC       Coiled-coil N-terminus of cGMP-dependent prot
      0.028   14.3  15.7      0.052   13.4   2.5    3.1  3  DUF724          Protein of unknown function (DUF724)
      0.036   14.5   2.4       0.91   10.0   0.1    2.9  3  Streptin-Immun  Lantibiotic streptin immunity protein
       0.11   13.2   2.1        0.6   10.8   0.4    2.4  2  DUF573          Protein of unknown function, DUF573
       0.11   12.7  21.8       0.36   11.0   6.4    3.0  3  ATG16           Autophagy protein 16 (ATG16)
       0.21   12.5  14.3       0.24   12.3   2.9    3.1  2  PRKG1_interact  cGMP-dependent protein kinase interacting dom
       0.24   11.8  11.6        1.7    9.0   0.4    3.4  2  DUF4200         Domain of unknown function (DUF4200)
       0.36   11.3   0.2       0.36   11.3   0.2    2.8  2  Fungal_TACC     Fungal Transforming acidic coiled-coil (TACC)
       0.42   10.1  22.2          1    8.9   1.5    4.0  4  MscS_porin      Mechanosensitive ion channel porin domain
       0.95    9.7  14.0          1    9.6   0.1    4.2  4  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_
        1.3    9.1   6.2        2.4    8.3   1.0    2.5  2  RasGAP_C        RasGAP C-terminus
        1.5    9.6   9.9        1.5    9.7   1.2    3.3  3  Rho_Binding     Rho Binding
        2.3    8.3  14.9       0.55   10.3   1.3    2.8  2  UPF0242         Uncharacterised protein family (UPF0242) N-te
        2.6    8.5   5.5         25    5.4   0.2    3.6  3  UPF0184         Uncharacterised protein family (UPF0184)
        2.6    8.0   6.0        9.2    6.3   0.1    4.3  5  Pox_A_type_inc  Viral A-type inclusion protein repeat
        3.2    7.7   5.2          3    7.8   2.6    2.4  2  T2SSF           Type II secretion system (T2SS), protein F
        3.5    8.3  18.6       0.32   11.6   4.1    3.7  4  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
        3.8    6.5  20.4        5.7    5.9   5.2    3.1  3  Atg14           Vacuolar sorting 38 and autophagy-related sub
        6.7    7.0  20.3          5    7.4   3.4    3.3  4  FliJ            Flagellar FliJ protein
        6.8    7.4  19.3         30    5.3   0.5    5.1  5  SlyX            SlyX
        6.9    6.9  12.5         14    5.8   3.9    3.1  3  Fib_alpha       Fibrinogen alpha/beta chain family
        8.9    6.4  12.0         12    6.0   0.3    3.4  3  DUF1664         Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.6   2.6e-06    0.0018     213     306 ..      21     114 ..      12     118 .. 0.82
   2 !   15.0   8.1   1.2e-05    0.0084     157     290 ..     140     276 ..     130     297 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
        Spc7 213 aeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivslsgstleltyrselevsf 306
                 +++++ k e+ e+ ++++ l++++++++++k+e+ +++++ ++  ++  + s s +++++ +v++l+ ++++++ ++++   +l+  +el+ ++
  CDO71266.1  21 TDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMRCSVDDLKTQSDVSFSTINDARSSLANVQELRADI 114
                 5666677777777777777778888888888888888888888888899999**************************9998888888877665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
        Spc7 157 lLekqeeeldellpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                  ++  e e +++ + l+ + + +  el++ +++  ele     d++ L  +  ++a+  ++++++ + +++ +++l +  +  +e +++ + ++e+i+e
  CDO71266.1 140 IIDTLELECQQVADLLRDRLQCVGGELAEAKNRISELEVaqgEDRAALSRANVAIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRE 238
                 455556678999999999***99999*99999999988766689******************************************************* PP

        Spc7 253 aervleeckgwsesevsrlkeevkaleeltgwkivsls 290
                    ++e++++  +   +  +e v++l++   ++i++++
  CDO71266.1 239 LHTLIERQRDQLKASTEMHEECVSKLCRYCTVEILNVD 276
                 ****************************9999999987 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.1   4.8e-07   0.00033     192     277 ..       4      89 ..       1      95 [. 0.90
   2 ?    3.4   5.7      0.07        48     196     281 ..     172     257 ..     164     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.8e-07
                 XXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 192 wykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeiree 277
                  y ++ ++l+  + +   +lr+ak ei e +r+i  l+++l++ +k+k+ + ++l+ ++e  ++ l+   ++l+++   + +++ +
  CDO71266.1   4 SYGRQEDDLSAIMMRGATDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMRCSVDDLKTQ 89 
                 688899999999999************************************************99999988888887777777765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.07
                 XXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 196 kleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarq 281
                 +++el+ a  ++ +al++a+  i+++   + sl   +++++ +   + +  ae e++l+a+ e+++e  + +e++  ++++ ++ +
  CDO71266.1 172 RISELEVAQGEDRAALSRANVAIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKASTEMH 257
                 66777777777777778888888888888888877777777777777777788888888888888888888888888888777665 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   3.2    0.0088         6      80     121 ..      27      68 ..       3      94 .. 0.79
   2 !   15.5   4.6     2e-05     0.014      34     119 ..     166     251 ..     132     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0088
        ADIP  80 ktqleqlerelalvqakerqlekklktleqklknekeelqrl 121
                 k +  +++re+al+q+++ +++k+  + ++ lk  ke +qr 
  CDO71266.1  27 KFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRS 68 
                 555567899999999999999999999999999999999995 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2e-05
        ADIP  34 iaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelq 119
                 +a++ n i +L +a+ +d+++    n  i +  ++ ++l  ++++  t+l ++ + +a ++ak++ ++ ++++l++ + +++++l+
  CDO71266.1 166 LAEAKNRISELEVAQGEDRAALSRANVAIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLK 251
                 5666788999999**********************************************************************985 PP

>> DUF2959  Protein of unknown function (DUF2959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00024      0.17      47     118 ..      28     104 ..      16     131 .. 0.70
   2 ?    6.8   1.5    0.0099       6.9      47     134 ..     161     252 ..     147     264 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
     DUF2959  47 fdggeLekeyeklnkeyeesekaaeevrerieaveevaealfkeWeeeldqys..saslrreSeqkl...ketrkky 118
                 f+ ge ++e   l++++++++k+ +ev++r++av+e+a+  ++   + l++++   ++l+++S+  +   +++r++ 
  CDO71266.1  28 FEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMRcsVDDLKTQSDVSFstiNDARSSL 104
                 6667777788899*************************998888877777654227889998876551113444433 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0099
     DUF2959  47 fdggeLekeyeklnk.eyeesekaaeevrerieaveevae.alfkeW..eeeldqyssaslrreSeqklketrkkykellkamkkaekkmeP 134
                 + ggeL ++ +++++ e  + e++a+  r  ++  ++ ++ a ++e   ++  + y+  s+ +eSe+kl++++++ +el + +++ +++++ 
  CDO71266.1 161 CVGGELAEAKNRISElEVAQGEDRAALSRANVAIAQSGSDvASLAECvkKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKA 252
                 55666666666665434555555555555555444443332223332114556789999*************************99999875 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0037       2.5      17      32 ..      30      45 ..      26      46 .. 0.93
   2 ?   -2.2   0.0       5.6   3.9e+03      23      29 ..     106     112 ..     105     113 .. 0.81
   3 ?   -0.8   0.0       2.1   1.5e+03       9      15 ..     172     178 ..     169     181 .. 0.86
   4 ?    5.4   1.3     0.024        16       8      21 ..     234     247 ..     228     251 .. 0.78
   5 ?    5.6   0.2     0.021        15       9      27 ..     277     295 ..     276     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0037
   PKcGMP_CC 17 laekdeEIqELrskLD 32
                + ek+ EI+ L s+LD
  CDO71266.1 30 IGEKHREIALLQSQLD 45
                789************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.6
   PKcGMP_CC  23 EIqELrs 29 
                  +qELr+
  CDO71266.1 106 NVQELRA 112
                 58***96 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.1
   PKcGMP_CC   9 RIRELEk 15 
                 RI ELE 
  CDO71266.1 172 RISELEV 178
                 9****96 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.024
   PKcGMP_CC   8 ERIRELEkrlaekd 21 
                 ERIREL   ++++ 
  CDO71266.1 234 ERIRELHTLIERQR 247
                 9*****99988765 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.021
   PKcGMP_CC   9 RIRELEkrlaekdeEIqEL 27 
                 RI  L++ laek++ ++EL
  CDO71266.1 277 RIVRLQAILAEKEAFVTEL 295
                 8888**************9 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.5   7.6e-05     0.052     112     177 ..      10      76 ..       3      84 .. 0.81
   2 ?    8.3   0.2    0.0027       1.8      60     185 ..      87     219 ..      81     223 .. 0.76
   3 ?    1.2   1.0       0.4   2.7e+02     120     160 ..     224     264 ..     212     279 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-05
      DUF724 112 kklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseae.kleeeledv 177
                  +l   ++  +++ r+++ ei e+ ++i+ l+ ql++++++k++ +++++++k  a+ +l+ ++++ 
  CDO71266.1  10 DDLSAIMMRGATDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQrSLQASCSSL 76 
                 56677788899999*************************9999999888888766541566666655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0027
      DUF724  60 klsiddsrseleslkeslaeLekhGFdVkalqsrlnkLlslkdeqtklleerkklekkieeees.......ekrkleeeidelekkilelerqlallke 151
                 k++ d+s s++++   sla+ ++   d+ + ++ +   l+  +e+ k++++++ ++    e+++       + + +  e++e +++i+ele  +   ++
  CDO71266.1  87 KTQSDVSFSTINDARSSLANVQELRADIATSLQSIAPYLEGGEEWGKAKDMKSIIDTLELECQQvadllrdRLQCVGGELAEAKNRISELEVAQGEDRA 185
                 456777888888888888888888888888888888888877777777777766555444444400011104455556667****************** PP

      DUF724 152 kkeaadkeiarlkseaekleeeledveqeFeava 185
                   ++a+  ia++ s++++l e +++ ++e  +++
  CDO71266.1 186 ALSRANVAIAQSGSDVASLAECVKKQRTELYDTL 219
                 *******************999999988877766 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.4
      DUF724 120 eeesekrkleeeidelekkilelerqlallkekkeaadkei 160
                 e e++ + ++e i+el   i + + ql++  e++e+  +++
  CDO71266.1 224 ESEAKLAAAKERIRELHTLIERQRDQLKASTEMHEECVSKL 264
                 44555555566666666555555555554445554444444 PP

>> Streptin-Immun  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.15     1e+02      53      84 ..      29      60 ..      23      68 .. 0.85
   2 ?   -2.4   0.0       9.6   6.6e+03       3      24 ..      89     110 ..      88     120 .. 0.73
   3 ?   10.0   0.1    0.0013      0.91      53      91 ..     235     275 ..     196     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.15
  Streptin-Immun 53 tleqiekeieklqnelskkideyeelvrkldk 84
                     +++ ++ei  lq +l++  +e +e+  +l+ 
      CDO71266.1 29 EIGEKHREIALLQSQLDHARKEKDEVSSRLKA 60
                    6788899***********99999999998875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.6
  Streptin-Immun   3 qldlkltelqekiatlnkmaev 24 
                     q d++++ +++  + l  + e+
      CDO71266.1  89 QSDVSFSTINDARSSLANVQEL 110
                     5688888888888888777664 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0013
  Streptin-Immun  53 tleqiekeieklqnelskkideyeelvrkldkf..vkvlnt 91 
                     ++ ++++ ie+ +++l+ + + +ee v kl ++  v++ln 
      CDO71266.1 235 RIRELHTLIERQRDQLKASTEMHEECVSKLCRYctVEILNV 275
                     68899999***********************9955567776 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00086       0.6       9      64 ..      35      91 ..      32     112 .. 0.80
   2 ?    1.3   0.1      0.81   5.6e+02      30      68 ..     210     248 ..     192     267 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00086
      DUF573  9 DEielLqglldfksktgtspksdldafyeavksslssdvsk.sqlseKlrrLkkkyr 64
                 Ei+lLq  ld+++k++ + +s+l+a+ ea+++sl+++ s  + +   +  Lk++ +
  CDO71266.1 35 REIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSlEAMRCSVDDLKTQSD 91
                59************9999989***************988776777767777776655 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.81
      DUF573  30 sdldafyeavksslssdvsksqlseKlrrLkkkyrnavs 68 
                 ++ +++y++++   +s+++    +e++r+L +  ++ ++
  CDO71266.1 210 KQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRD 248
                 566677777777777777777777777777654444333 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.0     0.042        29      76     148 ..      30     106 ..       8     119 .. 0.71
   2 ?    3.1   0.1      0.14        99      83     146 ..      97     162 ..      87     168 .. 0.87
   3 ?   11.0   6.4   0.00052      0.36      68     137 ..     193     262 ..     164     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.042
       ATG16  76 iqsleqklaqlreelaelyksrgelaqrllelnee....lqkleeklkedeerlaeleaeraaletklkdreeelre 148
                 i + + ++a l+++l  + k++ e ++rl++++e+    lq+  ++l++++ ++++l+++  +    ++d +  l+ 
  CDO71266.1  30 IGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAaqrsLQASCSSLEAMRCSVDDLKTQSDVSFSTINDARSSLAN 106
                 6677889999********************98876111134444566666666666666666555555555555544 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
       ATG16  83 laqlreelaelyksrgelaqrllelneelqklee..klkedeerlaeleaeraaletklkdreeel 146
                 +   r+ la+++  r++ a++l++    l+  ee  k+k +++ ++ le e++++ + l+dr + +
  CDO71266.1  97 INDARSSLANVQELRADIATSLQSIAPYLEGGEEwgKAKDMKSIIDTLELECQQVADLLRDRLQCV 162
                 66789999999999999999999999999988887799999999**********999999997765 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00052
       ATG16  68 snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraalet 137
                   +++ ++++sl++ ++++r+el +++   +e++ +l +++e +++l + +++++ +l++ ++++++   
  CDO71266.1 193 AIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKASTEMHEECVS 262
                 445667789**************************************************99999887655 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.9   0.00035      0.24      10      83 ..      34     114 ..      27     120 .. 0.73
   2 ?    4.3   3.5      0.11        75      16      73 ..     155     227 ..     142     267 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00035
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis.......eleeelkeleeLraen 83 
                     ++e   L+++L++++ke++e+ s+l+ +k+  q+s++++ s+le+ + +   l+ +         +  ++l +++eLra+ 
      CDO71266.1  34 HREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMRCSVDDLKTQSDvsfstinDARSSLANVQELRADI 114
                     566778999*****************9999999988888887777655544443332222334446688888899998876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.11
  PRKG1_interact  16 LkreLeelekelselkseleklkqqrqe..............svskrssllelekrerrslerkis.eleeel 73 
                     L+++L+ +  el+e+k+++++l++ + e              s s+ +sl+e+ k++r +l  ++s   e+e+
      CDO71266.1 155 LRDRLQCVGGELAEAKNRISELEVAQGEdraalsranvaiaqSGSDVASLAECVKKQRTELYDTLSiAAESEA 227
                     6666666666666666666666655333444555555555557778888888877777777777664333333 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4    0.0025       1.7      77     107 ..      32      62 ..      20     126 .. 0.60
   2 ?    7.2   1.3    0.0093       6.4      10      53 ..     224     267 ..     220     271 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0025
     DUF4200  77 ekeaeikklkaeietlkseiekleekleeyk 107
                 ek +ei+ l++++++ ++e+++   +l+ +k
  CDO71266.1  32 EKHREIALLQSQLDHARKEKDEVSSRLKAVK 62 
                 4444444444444444444444444443333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0093
     DUF4200  10 evqealeakkeeiqrleealkqreeelekkeqeleedllkfdkf 53 
                 e + +l+a+ke i++l+ ++++++++l+++ ++ ee + k++++
  CDO71266.1 224 ESEAKLAAAKERIRELHTLIERQRDQLKASTEMHEECVSKLCRY 267
                 567899*************************9999999888776 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00052      0.36      40      71 ..      23      54 ..      17      60 .. 0.84
   2 ?   -2.0   0.1       7.4   5.1e+03      38      50 ..     245     257 ..     226     282 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00052
  Fungal_TACC 40 ldklelenkslkqeieqLkkqleaerkEKqeL 71
                 l++ + e  + ++ei  L++ql+ +rkEK+e+
   CDO71266.1 23 LRNAKFEIGEKHREIALLQSQLDHARKEKDEV 54
                 566677778899*****************997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.4
  Fungal_TACC  38 kkldklelenksl 50 
                   + d+l+   + +
   CDO71266.1 245 RQRDQLKASTEMH 257
                  3333333333333 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.5    0.0015         1      99     150 ..      21      72 ..       8      85 .. 0.74
   2 ?    3.1   6.9     0.087        60      38      86 ..      36      89 ..      30     127 .. 0.49
   3 ?    2.9   0.3     0.095        66      91     138 ..     156     203 ..     139     216 .. 0.63
   4 ?    8.8   2.0    0.0016       1.1      86     136 ..     214     264 ..     209     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
  MscS_porin  99 eqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaq 150
                 ++l +++ ++ e +  ++ +q+ql  ar++ +e+++rL++ ++a ++  qa 
  CDO71266.1  21 TDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQAS 72 
                 66777777788888889999****************9999955555433333 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.087
  MscS_porin 38 kaeelqkaiddaPkelrelqqelealqkkkeeaskeilakl.....sleeLeqr 86
                +++ lq ++d a ke +e++ +l+a +++++ + +++ ++l     s ++L  +
  CDO71266.1 36 EIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLeamrcSVDDLKTQ 89
                455556666666666666666666664444444444444432222234444444 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.095
  MscS_porin  91 ssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLns 138
                  ++lq +  +la++++++ el+ +  + +++l+ a+ ++++  ++ +s
  CDO71266.1 156 RDRLQCVGGELAEAKNRISELEVAQGEDRAALSRANVAIAQSGSDVAS 203
                 345566666666666666666666666666666666666666555544 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0016
  MscS_porin  86 rllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrL 136
                 +l +t+s  +e +++la ++++++el+t +er + ql +  +  +e  ++L
  CDO71266.1 214 ELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKASTEMHEECVSKL 264
                 6778999999***************************99988888877776 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.7      0.36   2.5e+02       7      32 ..      35      53 ..      27      67 .. 0.59
   2 ?    9.6   0.1    0.0015         1       5      61 ..      65     126 ..      60     140 .. 0.89
   3 ?    0.3   0.1       1.2   8.4e+02       6      52 ..     156     204 ..     151     210 .. 0.70
   4 ?    3.8   1.2     0.095        65       6      33 ..     226     253 ..     221     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.36
  Plasmid_RAQPRD  7 eeLakllkqLdqlqalveraeaqakq 32
                    +e+a l++qLd+       a++++++
      CDO71266.1 35 REIALLQSQLDH-------ARKEKDE 53
                    455555555555.......5444444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0015
  Plasmid_RAQPRD   5 EreeLakllkqLdqlqalveraeaqakqe....ekaRvhf.dYdrlrrDleriraGIqsYLe 61 
                      ++ L +  + L+++  +v+++++q + +    + aR  + +++ lr+D+ +  + I  YLe
      CDO71266.1  65 AQRSLQASCSSLEAMRCSVDDLKTQSDVSfstiNDARSSLaNVQELRADIATSLQSIAPYLE 126
                     577899999*****************9999999889999868******************98 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.2
  Plasmid_RAQPRD   6 reeLakllkqLdqlqalveraeaqakqe..ekaRvhfdYdrlrrDleri 52 
                     r++L  +  +L+++++ ++++e+++ ++  + +R ++ +++  +D+  +
      CDO71266.1 156 RDRLQCVGGELAEAKNRISELEVAQGEDraALSRANVAIAQSGSDVASL 204
                     6777777778888888888888887777444457777777777777655 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.095
  Plasmid_RAQPRD   6 reeLakllkqLdqlqalveraeaqakqe 33 
                      ++La++++++ +l +l+er + q k +
      CDO71266.1 226 EAKLAAAKERIRELHTLIERQRDQLKAS 253
                     579******************9998776 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.0    0.0035       2.4      24      90 ..       9      75 ..       4     111 .. 0.83
   2 ?    2.9   0.3      0.16   1.1e+02      41      91 ..     204     254 ..     192     274 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0035
    RasGAP_C 24 ennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkk 90
                e+++  ++   a+d+rn +  + +  +E+  l++ l++ ++ ++ ++s+l+  k+  +++l+ + ++
  CDO71266.1  9 EDDLSAIMMRGATDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSS 75
                677777777889**********************************************999988544 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
    RasGAP_C  41 kgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkk 91 
                 + +  +k + El  + +  ++ + k +  +++++++++ ie+ ++qlk++ 
  CDO71266.1 204 LAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKAST 254
                 444444445555555555555556666668899999999999999998874 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.2    0.0022       1.5       1      40 [.      40      80 ..      40      89 .. 0.80
   2 ?   -1.3   0.0       5.9   4.1e+03       7      47 ..      78     118 ..      74     120 .. 0.72
   3 ?    4.1   0.8      0.12        85      24      61 ..     227     264 ..     202     287 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0022
  Rho_Binding  1 Ltkdvenlakekeelnkklkkleeelekak.eeeeeieklk 40
                 L++++++ +kek+e++++lk ++e+ ++   ++ +++e ++
   CDO71266.1 40 LQSQLDHARKEKDEVSSRLKAVKEAAQRSLqASCSSLEAMR 80
                 78999*******************99887634555555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.9
  Rho_Binding   7 nlakekeelnkklkkleeelekakeeeeeieklkasyekqL 47 
                   ++   ++l+ +     + ++ a+++ +++++l+a+  ++L
   CDO71266.1  78 AMRCSVDDLKTQSDVSFSTINDARSSLANVQELRADIATSL 118
                  55666778888888888888888888888888887766666 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.12
  Rho_Binding  24 eelekakeeeeeieklkasyekqLktErlLKtqAVNKL 61 
                   +l++ake  +e+++l +   +qLk  + + +  V+KL
   CDO71266.1 227 AKLAAAKERIRELHTLIERQRDQLKASTEMHEECVSKL 264
                  33333333333333333333344554444444444444 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.3    0.0008      0.55      89     170 ..      21     109 ..       5     122 .. 0.73
   2 ?    4.2   4.3      0.06        41     103     169 ..     185     254 ..     136     265 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0008
     UPF0242  89 ealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaek.......qellqeyqetieeqrsvlekrqd 170
                   l++++ e  e ++e++  +++l + ++e+ +++++l+a++e  +++++++ + L+         +++ + +  ti++ rs+l + q+
  CDO71266.1  21 TDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMrcsvddlKTQSDVSFSTINDARSSLANVQE 109
                 57888888889999999999999999999999999999999998888888887777765111111145555556778888888776665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.06
     UPF0242 103 eeldakeeelerlkeenqqLqekleaiae....dfeelkleleeqLaekqellqeyqetieeqrsvlekrq 169
                   l+  + ++++   + ++L e  ++  +    d      e+e++La  +e++ e+   ie qr  l+   
  CDO71266.1 185 AALSRANVAIAQSGSDVASLAECVKKQ-RtelyDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKAST 254
                 445555555555555555555433332.13455666778899999******************99998655 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.093        64      38      59 ..      40      61 ..      34      68 .. 0.85
   2 ?    5.4   0.2     0.036        25      21      56 ..      62      97 ..      59     127 .. 0.76
   3 ?   -0.2   0.2       1.9   1.3e+03      51      51 ..     136     136 ..      98     189 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.093
     UPF0184 38 insaLDalEernDdlnskLrEL 59
                ++s LD+  + +D++ s+L+ +
  CDO71266.1 40 LQSQLDHARKEKDEVSSRLKAV 61
                7899***************976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.036
     UPF0184 21 defgeeEyeainsmLDqinsaLDalEernDdlnskL 56
                +e+ ++ ++a  s+L+++ + +D+l  + D   s +
  CDO71266.1 62 KEAAQRSLQASCSSLEAMRCSVDDLKTQSDVSFSTI 97
                567777788889**************9999665555 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.9
     UPF0184  51 d 51 
                 d
  CDO71266.1 136 D 136
                 1 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       2.4   1.7e+03       5      22 ..      32      49 ..      29      49 .. 0.73
   2 ?    6.3   0.1     0.013       9.2       2      14 ..     165     177 ..     165     178 .. 0.86
   3 ?   -2.2   0.0       6.4   4.4e+03      16      21 ..     203     208 ..     203     209 .. 0.80
   4 ?    1.0   0.0      0.64   4.4e+02       7      13 ..     233     239 ..     229     240 .. 0.87
   5 ?   -2.2   0.0       6.5   4.5e+03      16      22 ..     294     300 ..     294     300 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.4
  Pox_A_type_inc  5 rlRsRIsDLErqLseCrr 22
                    ++ ++I  L +qL+ +r+
      CDO71266.1 32 EKHREIALLQSQLDHARK 49
                    56677777999**98885 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
  Pox_A_type_inc   2 EmsrlRsRIsDLE 14 
                     E+ + ++RIs+LE
      CDO71266.1 165 ELAEAKNRISELE 177
                     667789******9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.4
  Pox_A_type_inc  16 qLseCr 21 
                     +L+eC 
      CDO71266.1 203 SLAECV 208
                     59***6 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.64
  Pox_A_type_inc   7 RsRIsDL 13 
                     ++RI++L
      CDO71266.1 233 KERIREL 239
                     89****9 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 6.5
  Pox_A_type_inc  16 qLseCrr 22 
                     +L+e+r+
      CDO71266.1 294 ELNEARK 300
                     79**996 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         7   4.8e+03      70      90 ..       5      25 ..       3      27 .. 0.83
   2 ?    7.8   2.6    0.0044         3      28     101 ..     180     253 ..     162     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7
                HHHHHT-HHHHHHHHHHHHHH CS
       T2SSF 70 ageeggnLaevLerlaeylee 90
                 g++  +L+++++r a++l++
  CDO71266.1  5 YGRQEDDLSAIMMRGATDLRN 25
                688899999999999999886 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0044
                 SHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF  28 ngplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkllaa 101
                 +g+ + +l+r+   +++ gs  ++l++   ++ +el+++l+ a+e+  +La++ er+ e +   +++r +l+a+
  CDO71266.1 180 QGEDRAALSRANVAIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKAS 253
                 778889999999999999*99999999999899****************************9999999999886 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1    0.0015         1      54      93 ..      23      62 ..       8      69 .. 0.88
   2 ?   11.6   4.1   0.00046      0.32      14      91 ..      43     120 ..      35     123 .. 0.74
   3 ?   -0.5   0.3       2.9     2e+03      47      58 ..     166     177 ..     133     214 .. 0.50
   4 ?    2.2   3.4       0.4   2.7e+02      25      70 ..     208     252 ..     184     300 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
  HIP1_clath_bdg 54 lekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93
                    l + k e+ +k+ e+a l+s L++  ++++++ss+l+a +
      CDO71266.1 23 LRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVK 62
                    556688999***************************9876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00046
  HIP1_clath_bdg  14 qlsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaa 91 
                     ql  ar++++ev    k ++e  +r  + + + le  +  ++ Lk++   +   ++ ++ssL++ ++  ++++++l++
      CDO71266.1  43 QLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMRCSVDDLKTQSDVSFSTINDARSSLANVQELRADIATSLQS 120
                     5555566666666555566666665555555666688888999999999999999************99999999986 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.9
  HIP1_clath_bdg  47 leeqkeelekLk 58 
                     l+e k  + +L+
      CDO71266.1 166 LAEAKNRISELE 177
                     222233333333 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.4
  HIP1_clath_bdg  25 verekkeleeelerlkeeaerkleeqkeelekLkreleakraelar 70 
                     v++++ el ++l  + +e+e kl+  ke + +L++ +e++r++l+ 
      CDO71266.1 208 VKKQRTELYDTLS-IAAESEAKLAAAKERIRELHTLIERQRDQLKA 252
                     5566666666664.45566666666666666666666666665543 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.2    0.0082       5.7      57     116 ..      11      69 ..       3     125 .. 0.72
   2 ?    5.4   1.4     0.012       8.4      49     115 ..     146     212 ..      74     220 .. 0.57
   3 ?    4.2   6.2     0.028        19      34     123 ..     162     262 ..     155     288 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0082
       Atg14  57 qledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrs 116
                 +l++  ++ +++l++ k +i ++++++++l+ +l++ +ke +e + +l++ +++  +R  
  CDO71266.1  11 DLSAIMMRGATDLRNAKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAA-QRSL 69 
                 5566667778899999999999999999999999999999999999999998885.3332 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.012
       Atg14  49 legkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRr 115
                 le+++ a+ l+d++++    l e k++i++l+    e ++ ls+ + +i++    +a+l + +kk r
  CDO71266.1 146 LECQQVADLLRDRLQCVGGELAEAKNRISELEVAQGEDRAALSRANVAIAQSGSDVASLAECVKKQR 212
                 3333333444444444444444444444444444444444444444444444444444444444333 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.028
       Atg14  34 lksekeslkkkiekalegke...........eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdlesl 121
                 +  e ++ k++i++++  +            +  q+ +++ ++++ +++++++  d+ +  +e ++kl   k++i+e    +++++d+lk  ++ +e  
  CDO71266.1 162 VGGELAEAKNRISELEVAQGedraalsranvAIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKASTEMHEEC 260
                 555667777777766666665555555555555555566666666666666666666666888888888888888888888888888888666665554 PP

       Atg14 122 qn 123
                  +
  CDO71266.1 261 VS 262
                 44 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.4    0.0073         5      57     101 ..      26      70 ..      20      80 .. 0.76
   2 ?    1.4   0.9       0.5   3.4e+02       9      55 ..      64     112 ..      56     159 .. 0.68
   3 ?    0.4   0.3       1.1   7.4e+02      31      31 ..     128     128 ..      84     186 .. 0.50
   4 ?    4.5   7.6     0.055        38       8     111 ..     160     258 ..     134     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0073
        FliJ  57 ldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekk 101
                  + +i + ++e+a ++ q+++ar+e  e   ++k+++   +r  +
  CDO71266.1  26 AKFEIGEKHREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQ 70 
                 566788888888888888888888888888888888877777665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.5
        FliJ   9 eaqrelqqaeekleeleqyrqeyqkqlsgea.q.glsaaelrnyqafis 55 
                 +aqr lq+  + le+++   ++++ q   ++ + + + + l n+q+ ++
  CDO71266.1  64 AAQRSLQASCSSLEAMRCSVDDLKTQSDVSFsTiNDARSSLANVQELRA 112
                 4677777777777777777777766666666222223344444444444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.1
        FliJ  31 y 31 
                  
  CDO71266.1 128 G 128
                 2 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.055
        FliJ   8 aeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekkeeqke 106
                 + +  el++a++++ ele  + e +  ls +       ++ +  +  ++l e +++q+ el +      ++++++ +a+ + + l++L+er++++  + 
  CDO71266.1 160 QCVGGELAEAKNRISELEVAQGEDRAALSRAN-----VAIAQSGSDVASLAECVKKQRTELYDTLSIAAESEAKLAAAKERIRELHTLIERQRDQLKAS 253
                 55556777777777777777777777777777.....777777788999********************************************998777 PP

        FliJ 107 enrrE 111
                  + +E
  CDO71266.1 254 TEMHE 258
                 66666 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.5     0.043        30      25      55 ..      36      66 ..      29      77 .. 0.71
   2 ?    1.1   0.5      0.88   6.1e+02      33      50 ..     141     158 ..     136     184 .. 0.59
   3 ?    1.4   0.1      0.73   5.1e+02       3      47 ..     171     215 ..     169     227 .. 0.77
   4 ?    4.7   0.9     0.069        47       9      43 ..     226     260 ..     221     266 .. 0.81
   5 ?    5.3   0.2     0.045        31       3      25 ..     276     298 ..     275     299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.043
                HHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 25 vvaeqqqqidrlqrqlrllaerlkeleessg 55
                ++a  q q+d+ +++ +++  rlk+++e+++
  CDO71266.1 36 EIALLQSQLDHARKEKDEVSSRLKAVKEAAQ 66
                5566677777777777777777777777655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHHHT-XXX CS
        SlyX  33 idrlqrqlrllaerlkel 50 
                 id l+ +++++a+ l+++
  CDO71266.1 141 IDTLELECQQVADLLRDR 158
                 555555555555555443 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.73
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        SlyX   3 erleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerl 47 
                 +r+ eLE+       ++ + n ++a+   +++ l + +++ + +l
  CDO71266.1 171 NRISELEVAQGEDRAALSRANVAIAQSGSDVASLAECVKKQRTEL 215
                 799999999988888888888888888888888888777666655 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.069
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   9 EiklafqedtieeLndvvaeqqqqidrlqrqlrll 43 
                 E kla   + i eL   + +q++q+++ ++  ++ 
  CDO71266.1 226 EAKLAAAKERIRELHTLIERQRDQLKASTEMHEEC 260
                 88999999999999999999999998877766655 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   3 erleeLEiklafqedtieeLndv 25 
                 +r+++L+  la  e ++ eLn++
  CDO71266.1 276 DRIVRLQAILAEKEAFVTELNEA 298
                 79*******************86 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.9     0.021        14      34     120 ..      34     120 ..      29     151 .. 0.88
   2 ?    3.6   1.6     0.097        67      22     119 ..     151     251 ..     136     270 .. 0.56
   3 ?    3.2   1.3      0.13        90      49     121 ..     227     295 ..     202     300 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.021
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqk 120
                 +++++ l+++l+++++++ e+++  k++k+  ++  + +  + ++++ s ++l+++      ti++  s++ + q++  +   ++q 
  CDO71266.1  34 HREIALLQSQLDHARKEKDEVSSRLKAVKEAAQRSLQASCSSLEAMRCSVDDLKTQSDVSFSTINDARSSLANVQELRADIATSLQS 120
                 56889999**********************999999999989999999999999888888899999989998888887777766665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.097
                 HHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC...CCHHHHHHHCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha  22 lqdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleee...ilrlketidaqesnirvLqnvlesneqk 117
                 ++dll +  + v  +l++ +n+++e++  + e +   ++ +  +++  +  +   + +kk ++el +     ++ ++++ a  ++ir+L +++e+++ +
  CDO71266.1 151 VADLLRDRLQCVGGELAEAKNRISELEVAQGEDRAALSRANVAIAQSGSDVASLAECVKKQRTELYDTlsiAAESEAKLAAAKERIRELHTLIERQRDQ 249
                 455555555555555555555555555555555555555555555555555544555555555555221112344566666667777777777777766 PP

                 HH CS
   Fib_alpha 118 iq 119
                 ++
  CDO71266.1 250 LK 251
                 54 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.13
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  49 nstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkL 121
                  +   a+e ++e+++ ++++  + k ++++ ++  +    +  r+    + ++ +i  Lq +l ++e  +++L
  CDO71266.1 227 AKLAAAKERIRELHTLIERQRDQLKASTEMHEECVS----KLCRYCTVEILNVDRIVRLQAILAEKEAFVTEL 295
                 222333344444444333333333333333333333....333333333345666667777766666666665 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.6     0.028        19      44     108 ..      52     109 ..      11     126 .. 0.51
   2 ?    6.0   0.3     0.017        12      37     115 ..     135     213 ..     133     222 .. 0.89
   3 ?    0.8   0.2      0.69   4.8e+02      56      85 ..     228     260 ..     217     280 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.028
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvke 108
                 ++vs++l+ v+e+ ++  +   s ++ + +++d+ k  s    + ++++r+ l++++       e
  CDO71266.1  52 DEVSSRLKAVKEAAQRSLQASCSSLEAMRCSVDDLKTQSDVSFSTINDARSSLANVQ-------E 109
                 233333333333333333333334444444444444444333334444444333333.......3 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.017
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 + +++ ++++  + +qv + l++  +    ++++  +++ e + ++ e ++ +++++  +++ g+dv s+ e v++  +
  CDO71266.1 135 KDMKSIIDTLELECQQVADLLRDRLQCVGGELAEAKNRISELEVAQGEDRAALSRANVAIAQSGSDVASLAECVKKQRT 213
                 67888888899999999999999999999999999999999999999*************************9987655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.69
     DUF1664  56 slaatk...rhLssridrvdkkldeqkeiskei 85 
                 +laa+k   r+L   i+r  ++l++++e+ +e 
  CDO71266.1 228 KLAAAKeriRELHTLIERQRDQLKASTEMHEEC 260
                 444555111344444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1697  (0.0946511); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 1818.39
//
Query:       CDO71267.1  [L=528]
Description: hypothetical protein BN946_scf184908.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-74  249.2   0.0    3.1e-74  248.7   0.0    1.2  1  CK_II_beta      Casein kinase II regulatory subunit
    5.3e-26   90.7   1.3    5.2e-25   87.5   1.3    2.2  1  Ribosomal_L36e  Ribosomal protein L36e
    0.00042   20.5   0.9    0.00042   20.5   0.9    2.1  2  YL1             YL1 nuclear protein


Domain annotation for each model (and alignments):
>> CK_II_beta  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.7   0.0   5.2e-78   3.1e-74       1     182 []      53     272 ..      53     272 .. 0.93

  Alignments for each domain:
  == domain 1  score: 248.7 bits;  conditional E-value: 5.2e-78
  CK_II_beta   1 sWiswflslkgneyfvevdedfiedkfnltgLseevpnykealelildvee.eeeleeseksevessaelLYgliHaryiltkkglakmlekykkkefg 98 
                 +Wi+wf+sl+g+eyf+ev edfied+fnltgL+++vp +kea+e++ld+e  e++++  + s ve+saelLYgl H+ryilt++gl++m++ky+++ fg
  CDO71267.1  53 TWITWFCSLPGHEYFCEVAEDFIEDDFNLTGLNAMVPFWKEAMEMVLDMEPdEDTSKIPDVSIVEASAELLYGLCHQRYILTRAGLQAMVDKYEAGIFG 151
                 6***********************************************9652566777999************************************** PP

  CK_II_beta  99 rCprvlCekqkvLPvGlsdkpgektvklyCpkCedvYspkssrsrsidGafFGttfphlllltypele............................... 166
                 +Cprv+C++++v+P+G+sd pg +tvkl+Cp+C+d+Y+p+ssr + +dGafFGttf hl+++ y+el                                
  CDO71267.1 152 SCPRVYCHGCNVVPCGRSDLPGLDTVKLFCPNCNDIYTPPSSRFQGVDGAFFGTTFSHLFFQSYRELApapfykpsapsstsprssassssnqspfvnp 250
                 *****************************************9999***********************8888888888888888888887777777777 PP

  CK_II_beta 167 ......pkkskekyepriyGfk 182
                       ++  ++ y+p+iyGf+
  CDO71267.1 251 npyggqKRAAGKVYVPKIYGFR 272
                 77777666677**********7 PP

>> Ribosomal_L36e  Ribosomal protein L36e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   1.3   8.6e-29   5.2e-25       3      96 .]     444     526 ..     442     526 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 8.6e-29
  Ribosomal_L36e   3 glavglnkGhkvtknvsklrpsrrkgrltkrtkfvrdiirevaGfapyerrvmellkvskdKralKfaKkrlgthirakrKreelsnvlaamrk 96 
                      l +glnkGh +t   + +rps+rkg +++rtkfvr+i+rev+Gf+ yerrvmell++sk           lgt+ rakrK eels++++++r+
      CDO71267.1 444 HLRYGLNKGHPTTPIPKTVRPSNRKGVQSQRTKFVRSIVREVVGFSAYERRVMELLRNSK-----------LGTLLRAKRKLEELSTIIQESRR 526
                     5789******************************************************95...........9*******************996 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   3.4       1.1   6.5e+03      42      71 ..      12      40 ..       5      51 .. 0.41
   2 !   20.5   0.9     7e-08   0.00042       3     150 ..     275     471 ..     273     503 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 42 eeeeeensDsdfdsdeedeesdeeedeeeg 71
                 e++   +D++  s +++ +++ e+ e+e+
  CDO71267.1 12 TEDQAL-QDEEAISATGEGDEEMEDAEQEE 40
                444443.33333233222222222222211 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 7e-08
                 xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1   3 rRstAGnrlkkLleqeeeedelel.....lFaEeedDeefeseeeeeeee.nsDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkk 95 
                 +R+  G r++ +    e+ +el+l      +    +D+ + +ee  +e++  +  dfd d  d+++deee+e+e+  ++  + r+   +++ ++ ++ +
  CDO71267.1 275 ERAKSGPRMQWMRLRPENPEELDLvdwrgHWI--GEDDHYDGEEPADEDRpME--DFDPDAHDDDDDEEEEEKEEAHDVGVKGRTVA-AQSPTATNPPS 368
                 68888888887765666688888875555554..8999999998887776334..45555444443333333333333333333333.33344445555 PP

                 xxxxxxxxxxxxxxxxxxx...............................xxx..xx.xxxxxxxxxxxxxxxxx.......xxxx.........xxxx RF
         YL1  96 kskkkkkkqkkkkkkkidp...............................qak..ep.rpkkkseraswlpaesl.......ltpk.........rRks 144
                 +++++    + + ++k+ +                               q++  ++ +  kk  r+s  p++++       +             R s
  CDO71267.1 369 SPATSGPPPTPHDEAKLSKqqcatmspppstggklrvirqwvplgpanraQPTsnQQrQDFKKMARSSAYPSQNEhlryglnK--GhpttpipktVRPS 465
                 55555554444444444445677788899999999999999999998887333323335555558888888755545554440..04445556666777 PP

                 xxxxxx RF
         YL1 145 sRastv 150
                  R+ + 
  CDO71267.1 466 NRKGVQ 471
                 776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3897.76
//
Query:       CDO71268.1  [L=400]
Description: hypothetical protein BN946_scf184908.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-17   62.8   3.7    3.9e-17   62.8   3.7    2.0  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.12   12.8   2.0       0.27   11.7   0.6    2.1  2  Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
        4.6    7.9   0.0        4.6    7.9   0.0    3.7  4  PSI_PsaJ     Photosystem I reaction centre subunit IX / PsaJ


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.9   5.4e+03      69      90 ..      96     116 ..      69     122 .. 0.56
   2 !   62.8   3.7   6.5e-21   3.9e-17       1     119 [.     168     291 ..     168     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.9
  SNARE_assoc  69 lallllrllpivPrdlvnyvaG 90 
                   +l++l + p   +++v++ ++
   CDO71268.1  96 PVLFVLIMFPLT-TAVVALCMS 116
                  345555555543.444444443 PP

  == domain 2  score: 62.8 bits;  conditional E-value: 6.5e-21
  SNARE_assoc   1 lPsevll.vaaGvlfglllgtlvtslgallGaslayllgrylgr...kalrrkllsekrvka.lerlverygflallllrllpivPrdlvnyvaGltr 93 
                  +P++vl+ v+aG+lf + l+++++ l +++G++ a ll+++lg+   + ++r l   + + +    + e   ++ l +lrl+ +vP + +n+++G+++
   CDO71268.1 168 IPGSVLSnVLAGALFPPALAIVLLTLLTTMGSLSASLLAAPLGPflaQLMPRPLAMTRSALEgDGNKTESSPWVRLSILRLVGVVPWSGINIACGVCG 265
                  79999999***********************************99985555555444444444444555677889*********************** PP

  SNARE_assoc  94 vsfkrFflatfiGsipwalvyaylGs 119
                  v +++ fl+++iGs+pw+ v++++G+
   CDO71268.1 266 VAVWDCFLGALIGSLPWTAVTCQIGD 291
                  *************************8 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.33     2e+03       3      17 ..       9      23 ..       7      26 .. 0.85
   2 ?   11.7   0.6   4.5e-05      0.27       4      65 ..     338     396 ..     335     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
  Cep57_MT_bd  3 lrpsqspkeaLaevl 17
                  r+s +p+ aLa+ l
   CDO71268.1  9 PRQSHPPRSALASML 23
                 589********9987 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.5e-05
  Cep57_MT_bd   4 rpsqspkeaLaevlkeLedEfehlklelqelaaqynaldpslgkrkRkdLaeeleelvkrlE 65 
                  r+  s+k  L+     Led+ +   +  +e ++++++      +r R++L++ele lv++ E
   CDO71268.1 338 REWLSSKAPLEQTASSLEDDRASRWAWVKEWRSRIRSAS---RSRTREALEKELETLVREKE 396
                  66667777777778889999999999999********99...****************9977 PP

>> PSI_PsaJ  Photosystem I reaction centre subunit IX / PsaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.5      0.14   8.2e+02      11      24 ..      95     108 ..      90     113 .. 0.74
   2 ?   -1.2   0.6      0.51   3.1e+03       8      20 ..     147     159 ..     147     162 .. 0.85
   3 ?   -2.7   0.7       1.6   9.3e+03      13      23 ..     185     195 ..     184     197 .. 0.66
   4 ?    7.9   0.0   0.00077       4.6       4      14 ..     322     332 ..     321     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
    PSI_PsaJ  11 APVlatlwlsftAg 24 
                 APVl++l +  +++
  CDO71268.1  95 APVLFVLIMFPLTT 108
                 9*****99875554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.51
    PSI_PsaJ   8 LStAPVlatlwls 20 
                 LStA V+ ++ ++
  CDO71268.1 147 LSTAHVVGVISVV 159
                 8******999876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.6
    PSI_PsaJ  13 VlatlwlsftA 23 
                  la+++l+ ++
  CDO71268.1 185 ALAIVLLTLLT 195
                 57778777765 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00077
    PSI_PsaJ   4 flkYLStAPVl 14 
                 fl +LS+AP+l
  CDO71268.1 322 FLSFLSLAPIL 332
                 999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3006.50
//
Query:       CDO71269.1  [L=412]
Description: hypothetical protein BN946_scf184908.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-30  105.1  15.7      3e-18   65.9   4.2    2.4  2  CRCB      CrcB-like protein, Camphor Resistance (CrcB)


Domain annotation for each model (and alignments):
>> CRCB  CrcB-like protein, Camphor Resistance (CrcB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   3.8   7.4e-16   1.3e-11       5      90 ..     115     226 ..     111     231 .. 0.70
   2 !   65.9   4.2   1.6e-22     3e-18       2      93 ..     283     393 ..     282     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 7.4e-16
                 HHHHHHHHHHHHH.HHHHBE...BHHHHHHHHHHHHHHHHHHH..............HHTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHH......... CS
        CRCB   5 lggalGallRyllssllnkr...plgtlavNvlGsfllgllla..............llttGflGglTTfStfvlelvslleegellaal......... 77 
                   +++G+l+R++l+s+++     ++   +v   G++++g++l+              ++ttGf+G+lTTfS + l++++ + +g  ++ +         
  CDO71269.1 115 PASIFGVLARLGLQSITTFDersIFPLAWVQAGGCLIIGFALGmkepfgrfygplytAVTTGFCGSLTTFSGWQLDIFTSWINGTGAH-Rdwfrdaidg 212
                 5689*********776655589966899************888666666655555556********************9774442111.1223444555 PP

                 .HHHHHHHHHHHHH CS
        CRCB  78 .lyvllsvvlglla 90 
                    ++++++++l a
  CDO71269.1 213 vGKTVFTLAISLSA 226
                 55555555555555 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 1.6e-22
                 HHHHHHHHHHHHHHHH.HHHHBE....BHHHHHHHHHHHHHHHHHHH.........H..........HTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHH CS
        CRCB   2 lvalggalGallRyllssllnkr....plgtlavNvlGsfllgllla.........l..........lttGflGglTTfStfvlelvslleegellaal 77 
                 +++l+++ G+l+Rylls +ln+r    plgtl++N +G++llg +           l          l++G++G+lTT+Stf++el +l ++    +a 
  CDO71269.1 283 AALLFSFPGTLTRYLLSIQLNPRlklfPLGTLVANTFGTALLGTFQVlqslpagdtLsahscailrgLADGYCGCLTTVSTFAAELDALDNR----RAW 377
                 5789******************9***989***************88855555555505555555566*********************9655....467 PP

                 HHHHHHHHHHHHHHHH CS
        CRCB  78 lyvllsvvlgllavvl 93 
                 lyv++s++++ +++++
  CDO71269.1 378 LYVTISWLTSQILLAV 393
                 8888888887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3009.66
//
Query:       CDO71270.1  [L=294]
Description: hypothetical protein BN946_scf184908.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-15   55.0   0.0    9.5e-15   54.6   0.0    1.1  1  adh_short     short chain dehydrogenase
    6.2e-08   32.5   0.0    7.9e-08   32.1   0.0    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.069   13.3   0.0       0.13   12.3   0.0    1.4  1  Rap1_C        TRF2-interacting telomeric protein/Rap1 - C ter


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.6e-18   9.5e-15      48     191 ..      43     189 ..      33     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.6e-18
                 TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSE.SEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB- CS
   adh_short  48 gakalaiqvDvtdreevealvekavkkl.gkl.dvLvnNAGitgsgpfselseeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpv 143
                 g+ +  +++ v++++   a+v++a + + g+  d++  +AG ++++   e +ee ++  ++  + +   ++  ++++m+ ++ +G+ v++sSv g  ++
  CDO71270.1  43 GQIIRSYSFAVNSEAGSAAAVKAASEAHgGRCpDAFFLCAGASRPQFWVEQTEELIRMDMDATFGSQAFTALVATKEMVkQGVKGKLVFISSVLGYFSM 141
                 556778889999999999999999999953334*********999999999999999999999999999999999999967789*************** PP

                 TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 144 agvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 +g++ Ys  K+a++gl+++l+ e++ + i v++  PG + +   +e++
  CDO71270.1 142 IGYSTYSPGKFAIRGLAEALQSEFKLYDIDVHISLPGTIYSRGLEEEN 189
                 **************************************9987776665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.3e-11   7.9e-08      46     212 ..      49     216 ..      29     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.3e-11
                   EE--TTSHHHHHHHHHHHHHHH.SS.EEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTT CS
  adh_short_C2  46 lecDVtdeeqvealveevvekf.gk.lDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpn 137
                   +   V++e+  +a+v+++ e + g+  D ++ +ag +++  +  +e ++e ++  +d  + s + +a  a + ++k+g  g++v +ssv +  ++ +
    CDO71270.1  49 YSFAVNSEAGSAAAVKAASEAHgGRcPDAFFLCAGASRP--QFWVEQTEELIRMDMDATFGSQAFTALVATKeMVKQGvkGKLVFISSVLGYFSMIG 143
                   66679999999********99953336************..9999999************9999999999996777779****************** PP

                   TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B.-HHHHHHHHH CS
  adh_short_C2 138 ynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlg.tpeevaeaal 212
                   y+ y+  K a+ +l+ +l  e+  + i v+   pg i    ++g++++++++ ++  ++     g tpe vae++l
    CDO71270.1 144 YSTYSPGKFAIRGLAEALQSEFKLYDIDVHISLPGTIY---SRGLEEENKVKPQVTLKIEETDSGsTPEYVAETIL 216
                   ***********************************999...77788888888888877777777668888888775 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.2e-05      0.13       6      70 ..     225     287 ..     221     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
      Rap1_C   6 GykdefithaLkatsldppvlanyvlealkr..gk.glpknkrGiWteedDeaLkagderdlerlekk 70 
                  ++ ++i+ha++ats+      +y+++ +    g  glp     iW ++ D+ + a +e+ +e l +k
  CDO71270.1 225 HITMDCIGHAFRATSAGSSPRNSYITDLVYGliGYiGLP-----IWRKSVDATVVAHREEHYEYLRQK 287
                 677899***********9999999999999987557***.....********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2002.48
//
Query:       CDO71271.1  [L=159]
Description: hypothetical protein BN946_scf184908.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1205.39
//
Query:       CDO71272.1  [L=315]
Description: hypothetical protein BN946_scf184908.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-11   44.5   2.1    2.7e-10   40.4   2.1    2.0  1  60KD_IMP       60Kd inner membrane protein
  ------ inclusion threshold ------
      0.026   14.1   0.3      0.063   12.8   0.3    1.7  1  Bac_rhodopsin  Bacteriorhodopsin-like protein
      0.091   13.0   0.4       0.17   12.1   0.4    1.4  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   2.1   4.5e-14   2.7e-10       3     164 ..      61     294 ..      59     296 .. 0.73

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 4.5e-14
    60KD_IMP   3 laIilltiivrlil.lpltlkqlkss.....akmqelqPelkeiqekyk....................kd.kqklqqemmklYkkegvnplaGc.lpl 73 
                   Iil+t++ rl++ +p+++   + +       + +l+ e+ +i +  +                    k  +  +++  ++l +++  +p+  + +p+
  CDO71272.1  61 CTIILVTVVTRLAFtVPFSVWAKNRQwraenVVIPQLKQEIPAIHKHVQqemkkdgfrgdkeaviaeinKRtRVVAAKRRTELLRENRCSPMLTIaMPI 159
                 678888888887652566665554443332223344666666666666667778888888888887763221345888999**********9865389* PP

    60KD_IMP  74 Liqlpifialyrvlrsla.........sfw.ikdLsapd....lpillavttflq................qklsksk...................km 123
                 + qlp+f++   v++++a          f+ +++Ls+ d    lpi+l+++t+++                q     +                   k+
  CDO71272.1 160 VTQLPLFVGTSMVMSEAAraptvldseAFFtLTSLSHADstltLPIMLGIITLANvesskwfvsaevlqreQ-----QvskwtaerrargeqvleprKI 253
                 ****************88888888877555699****999999********999955554444444433331.....0444555566677777777666 PP

    60KD_IMP 124 qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqlii 164
                  ++ l ++ +  +++++ +p  + lYw++s ++ ++q++ +
  CDO71272.1 254 YQTALRILSVGRILIAAMVPGTVQLYWVTSATFGLLQSWAL 294
                 778889*******************************9976 PP

>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.1e-05     0.063      74     137 ..     196     290 ..     139     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
                    HHHHHHHHHHHHHHHHHHTTSS................................HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin  74 YidWllttPllvlvlaelagad................................rrtllvlvladvvmivgglvgaliestyrwvyftisvaallv 137
                     +d++lt P+ +l ++ la+++                                  + + ++++ ++ +   l++a++++t+++ + t ++++ll 
     CDO71272.1 196 HADSTLTLPI-MLGIITLANVEsskwfvsaevlqreqqvskwtaerrargeqvlEPRKIYQTALRILSVGRILIAAMVPGTVQLYWVTSATFGLLQ 290
                    67999*****.999***********************************9999977888999***************************9999885 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   2.8e-05      0.17      33      86 ..      82     138 ..      79     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT...S-TCCCCCCCHHHHHHHHHH CS
  Seryl_tRNA_N  33 eldekrrelqveleelqaerNelskeIgkakkkk...edaeeliaevkelkeelkal 86 
                   + ++++r+ +v + +l++e  ++ k++++ +kk+    d+e++iae+++    ++a+
    CDO71272.1  82 AKNRQWRAENVVIPQLKQEIPAIHKHVQQEMKKDgfrGDKEAVIAEINKRTRVVAAK 138
                   56789***************************999***********99876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2317.75
//
Query:       CDO71273.1  [L=238]
Description: hypothetical protein BN946_scf184908.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-39  134.6   0.1      3e-39  134.0   0.1    1.3  1  Ribosomal_L6e    Ribosomal protein L6e
    0.00013   22.2   0.1    0.00013   22.2   0.1    2.2  2  Ribosomal_L6e_N  Ribosomal protein L6, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L6e  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.1   3.4e-43     3e-39       1     111 []     129     238 .]     129     238 .] 0.94

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 3.4e-43
  Ribosomal_L6e   1 lNgvPLrRvnqryVIatstkvdlsgvdekipeklndeyFkkekkkkkkkkkeeelf..eekkekkelseerkadqkavDkallaaikkekllkkYL 94 
                    +NgvPLrRvnq+yVIatstkvdl ++  k++ek+nd+yF k ++k ++ ++eee+f   + kek+ ++e+++adqkavD+a++aaikk+++l+kY+
     CDO71273.1 129 VNGVPLRRVNQAYVIATSTKVDLGDF--KVDEKINDAYFVKPAAKGAR-SAEEEFFseGKPKEKQPFPESKAADQKAVDAAVIAAIKKTDYLQKYI 221
                    7*************************..**************877776.99*****6555566788****************************** PP

  Ribosomal_L6e  95 kskFsLrkgdyphelkF 111
                    k++F+L+kg++ph+l+F
     CDO71273.1 222 KASFGLSKGQFPHQLVF 238
                    ***************99 PP

>> Ribosomal_L6e_N  Ribosomal protein L6, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.4e-08   0.00013      11      46 ..       3      33 ..       1      45 [. 0.80
   2 ?   -1.8   0.5      0.43   3.9e+03      38      51 ..      68      81 ..      62      87 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.4e-08
  Ribosomal_L6e_N 11 rNpvLvrGIgRYSrsamysrkalYkrKysatkskie 46
                     rN      +gR Srsa+y+r++l+k+       k+e
       CDO71273.1  3 RNKEISPAVGRLSRSAVYARRGLWKGLK-----KSE 33
                     9999999******************542.....333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.43
  Ribosomal_L6e_N 38 ysatkskiekkkke 51
                     y a   + +kk ++
       CDO71273.1 68 YPAEDVRQPKKSRK 81
                     77777888888543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1621.13
//
Query:       CDO71274.1  [L=125]
Description: hypothetical protein BN946_scf184908.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   23.6   0.0    5.2e-05   23.6   0.0    1.0  1  Hydrolase  haloacid dehalogenase-like hydrolase
     0.0011   19.1   0.0     0.0011   19.1   0.0    1.1  1  HAD_2      Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.8e-09   5.2e-05     104     182 ..      38     120 ..       5     125 .] 0.81

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.8e-09
                 TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCES..STTTSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxx..xxxxxxxxxxxx RF
   Hydrolase 104 qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyf.daviasdiet..vakpspegkvaa 182
                 + + ++ + ++d lk+ p+++++++ + + +++v+ lt+  +++a r+++ lG dd +  +v++ + +     kp+pe ++ +
  CDO71274.1  38 DRKCDGSLPLEDLLKPDPDLRKLLEDIDRSKVRVWALTNAYHTHASRVLRILGvDDLIeGIVYCDYSNPnfSCKPEPEFYQNV 120
                 5567788889999****************************************99999555555555559999*****99876 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.2e-07    0.0011      76     144 ..      49     120 ..      10     125 .] 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.2e-07
       HAD_2  76 kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekk...KPdpevieka 144
                 + +kp +++++lLe++ + ++++   T+  +  + + l+ lg++++++ iv  +  + +   KP+pe ++++
  CDO71274.1  49 DLLKPDPDLRKLLEDIDRSKVRVWALTNAYHTHASRVLRILGVDDLIEGIVYCDYSNPNfscKPEPEFYQNV 120
                 48999**********************************************99988777788*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 911.57
//
Query:       CDO71275.1  [L=201]
Description: hypothetical protein BN946_scf184908.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-12   47.2   0.0    2.3e-12   46.9   0.0    1.1  1  UPF0183   Uncharacterised protein family (UPF0183)


Domain annotation for each model (and alignments):
>> UPF0183  Uncharacterised protein family (UPF0183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.3e-16   2.3e-12      18     136 ..      35     147 ..      15     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.3e-16
     UPF0183  18 lksqestikkvellYsdkeplkvdivinlkedgirLiFdpvsQrLklIevydlkk....vkLkYagkvfnspsvkatieqienlfGaTypgeydaekkl 112
                 l  +++++++v+++Y+  +p + +i+++l ++ + L F + +QrL ++ v++l+     ++L+Y++++++s++   +   + ++fG+Typge       
  CDO71275.1  35 LLWEQHIFPQVDVKYDPDTP-NTPIILHLRPH-LDLLFSGQQQRLSTLSVKNLRDpnppLTLTYKNSILSSSEDVLKKVGVSRMFGPTYPGE------- 124
                 44456689*******99888.789*****986.9*******************97333368***********9999999************7....... PP

     UPF0183 113 yvlsyrGlsfefpiesevkslvsk 136
                   l y+Glsf+f +e + ++l s 
  CDO71275.1 125 -DLLYPGLSFSFDEETRQDTLKSP 147
                 .499*********99866555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1352.65
//
Query:       CDO71276.1  [L=3319]
Description: hypothetical protein BN946_scf184908.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-87  293.9   2.5    2.2e-87  293.9   2.5    2.5  3  Apt1         Golgi-body localisation protein domain
    6.1e-43  146.6   0.1    1.2e-42  145.7   0.1    1.5  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
      9e-41  140.2   0.0    2.1e-30  106.1   0.0    2.5  2  Fmp27_WPPW   RNA pol II promoter Fmp27 protein domain
    1.1e-39  136.0   0.0      2e-39  135.2   0.0    1.5  1  Fmp27_GFWDK  RNA pol II promoter Fmp27 protein domain
      3e-24   85.7   0.0    1.6e-23   83.3   0.0    2.1  2  DUF2405      Domain of unknown function (DUF2405)
    6.3e-21   75.0   0.0    4.3e-20   72.3   0.0    2.5  2  Fmp27_SW     RNA pol II promoter Fmp27 protein domain
  ------ inclusion threshold ------
      0.036   14.2   0.7       0.43   10.7   0.1    2.5  2  DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
        5.3    7.6   5.1         13    6.4   5.1    1.6  1  SMP          Seed maturation protein


Domain annotation for each model (and alignments):
>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   2.7e+03     344     374 ..    2411    2441 ..    2339    2461 .. 0.51
   2 !  293.9   2.5   9.8e-91   2.2e-87       2     465 ..    2677    3163 ..    2676    3164 .. 0.80
   3 ?   -4.4   7.5       2.8   6.4e+03     331     387 ..    3220    3306 ..    3190    3315 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
        Apt1  344 sssrssslelrlkptsstssssssessssss 374 
                   +sr ++l +r ++++++++s++ ++ s+ss
  CDO71276.1 2411 ATSRVEQLRQRAREEARKTKSQKHRHPSESS 2441
                  2333333333322222222221111111111 PP

  == domain 2  score: 293.9 bits;  conditional E-value: 9.8e-91
        Apt1    2 vqrtsaslrydkyntlrlkyndesvsseeeee....ekrvdelsvefpklratanSsQYyalydivtdLLlysePlekerserlekimlasdfsdle 94  
                  v +t+a+++ydk+n+lrl ++ +sv+++ +++    ++++d +++++p+++++an ++++a+ +ivt+L l+++ ++k+rse+le +++++df++l 
  CDO71276.1 2677 VPQTDATFQYDKFNRLRLRNDVTSVAKNAQHThahlQNQTDLIRLHVPRFTVSANDRHFQAISNIVTNLVLFTDAAHKTRSEKLESLLFSYDFTNLG 2773
                  679*******************99999888889**************************************************************** PP

        Apt1   95 glpemvkklqerirqleeikehfqieskyldkegwedrlklekelaeceeeLfllmkaittsqlrkkekskskslsaalrwsisadeivWhlldddg 191 
                  +++++v ++q+r+r   e+k++ + +   + ++g+ ++lk++  +  + eeL+l++ ai+ +q++    s+++++++al +++s++e+ W++ld ++
  CDO71276.1 2774 SAADVVANMQQRLRHAIETKREAEPKLLEYGNSGRVELLKIDAHILLLIEELNLIFDAIKLAQDKA---SDQSDQKSALLLHASSEELSWRMLDRHD 2867
                  ****************888777777777889********************************766...666666678******************* PP

        Apt1  192 eplaelqLknaeydrtdnsdgsnsnrleigslqglNllpnaiypellspy...edepedkkkpmlrvywkmlepvgGipvlehfevnlfPlkiqLee 285 
                  + la+l+++++ + + ++ d+s +n+l ig+lq+++   +a  +e+ls+y    ++p  k++ +l ++w++l+pvgGi+++e+fe+ l+P+++q++ 
  CDO71276.1 2868 QLLAKLAVRDTDFYWLSRHDSSTVNKLAIGDLQAFDGAADAEWTEILSKYdepATHPLVKRNLFLLAEWTVLPPVGGITIYEEFELMLHPMRLQIDI 2964
                  **************************************************999889999************************************** PP

        Apt1  286 evgkklfeYiFPkrdsdaqea...smvkess........seeddesdeesessssssssssssassssssssrssslelrlkpt............. 358 
                  +vg+k++eY+ P r++++q+    +     s         ++d    + ++s+          ++ss +   r+s   +rl p              
  CDO71276.1 2965 RVGRKIMEYLWPARRNRKQSPtetE-----SfaipeppsRSDDLPAVTYTDSP----------RHSSFDLPPRKSLDASRLAPPvlrrlgtsrsftd 3046
                  ***************9999883220.....12221222222222222222222..........2222333333333333333334555554444433 PP

        Apt1  359 ....sstssssssessssssskkrsseesslessaserv....kssr........asddleemksRaskymtfayikipsvvlclSYkgkkeknled 439 
                       ++s + ++ ++++ss   +s+ ++ l+ ++ +++    +           + dd++emk+Ras  +tf+ +++ s++l+lS  ++++     
  CDO71276.1 3047 lrntRQDSLQVPRLHKTRSSDVLKSRANDGLSMTKFSTSaggrG--AhdkdqrkqELDDAAEMKTRAS-QKTFVRVRVASLHLMLSIMKEDS---FL 3137
                  33322222222222222232222333333333333333334540..0445555669************.69****************97777...78 PP

        Apt1  440 vhdlvfrlPtleyrnktwsnldLala 465 
                  ++d ++r+  leyrn+tws+++L+++
  CDO71276.1 3138 CRDARIRTRDLEYRNQTWSFEELVDQ 3163
                  ***********************987 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 2.8
        Apt1  331 s............ssssssassssssssrssslelrlkpt..................sstssssssessssssskkrsseessles 387 
                  +            s++++s++s++  +s+++sl  +l+pt                  ss++ s  +++  s +++k+ ++++s+ s
  CDO71276.1 3220 TskgngsrgtmssSDAETSRKSKDVPRSSAGSLRPKLRPTatdspfltsepetirtpkSSARPSGVRQRAISLFKRKHAHSQDSMDS 3306
                  022333455443455555555555555566666666666688877777766666655533333433444444444444444444444 PP

>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.1   5.2e-46   1.2e-42       2     207 ..     290     493 ..     289     497 .. 0.95

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 5.2e-46
                  EEEES--S-TT----HHHHHHHHHHH.HTT--SEEEEES-SSBTTSHHHHHT---S--SSHHHHHHHHTHHHHTTS-TTSEEEEE--TTBTT-S-SBS CS
  DNA_pol_E_B   2 vivsglnldndnrsleaLrkiLqgyapeesppdvlilaGnfvdaahkaiasskvstdekkenfdalalllsilesllekttvvlvPgpnDpanstvlP 99 
                   ++s+++ld  +++l+ Lrk+++   ++   p++++l+Gnf++   ++ ++ ++      e+f+ala l s ++ ++ +t++v+vPgp D++ ++vlP
   CDO71276.1 290 FVLSDVWLD-RPETLQGLRKLFDNCMENSFIPKLIVLCGNFTSVGIPQGNGREG---PLAEHFEALADLISSYPLITRTTHFVMVPGPLDVTLNSVLP 383
                  689******.****************9999*******************99998...7**************************************** PP

                  B----TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHH..HS-HHHHHHHHHHHHTBS---SS--B-GGGGGGGB-GGG- CS
  DNA_pol_E_B 100 qqPlprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesnt..dverlrklvktildqrhlaPlaptlrpvswdkddalvlep 195
                  + Pl + ++ r+k+ +++++++tNP+ri+++++e+v++++d+++++ r+ +  +++  + +  r lv+tildq+hl+Pl  +++p   + d+al l+p
   CDO71276.1 384 RRPLLSSFVGRLKSRIPNVHFATNPCRIKFFEQEIVIFREDLMSRMLRNLVGVKPDvkNDDLKRYLVQTILDQSHLMPLTISIQPTLAEHDHALRLYP 481
                  ***************************************************99997656677899********************************* PP

                  --SEEE---SS- CS
  DNA_pol_E_B 196 lPdvlvlpdelp 207
                  lP+++vl+d+ +
   CDO71276.1 482 LPTAVVLADRYD 493
                  ********9665 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   9.2e-34   2.1e-30       1     244 [.    2246    2477 ..    2246    2534 .. 0.83
   2 !   31.7   0.0   3.2e-11   7.3e-08     374     454 ..    2573    2653 ..    2499    2660 .. 0.75

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 9.2e-34
  Fmp27_WPPW    1 GlKakvdsfklDLHQRreelttvnkklnkqkkvsklkinegeidlksaDiRavsasfketsveeikesslsslsseqssessesdlsrfeipdnDls 97  
                  G+Ka +++f  DLHQR  e     ++    k+v +  +++ e+ lk  D+Ra+ a f +   + +  +++   s+ +        +++ + ++   +
  CDO71276.1 2246 GVKALINEFHADLHQRDTETCNMTEGG--VKTVHHKPFYAIEVVLKGLDLRAMLAVFPDPLKQCTPLDNTPLVSNYR-------TRNHLTPIELSSD 2333
                  99**************98766655555..799**************************9655555555543333322.......333455667778* PP

  Fmp27_WPPW   98 WiDmdDFveldwiepeesnpkikilPLaysPrftYfRqtdegdkiqvdek...rispFgnektHdCilgkendpervqkelleeRleeleeqiekle 191 
                  W+DmdDF   d  +p  s+p+i++lP +  PrftYf+++de+  i+  ++     s+Fg e+tH C+lgke +  ++q++l+ +R+e+l+++ ++  
  CDO71276.1 2334 WVDMDDFAFHDEETP--SHPDIHMLPVVSCPRFTYFKRVDEH--ISSAPDkptDRSKFGFEDTHVCLLGKEPSVTQIQMDLATSRVEQLRQRAREEA 2426
                  ********9999999..9************************..444443223666**************99999*******************999 PP

  Fmp27_WPPW  192 ekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse 244 
                  +k +++++++ +  e++++e e  ++ +++l + + +le ++++l++ + +s+
  CDO71276.1 2427 RKTKSQKHRHPS--ESSADEDEPARRGMNDLPRMIALLEGYISQLRQVDVASQ 2477
                  999999999888..899999999**********************99887544 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 3.2e-11
  Fmp27_WPPW  374 aeefeaqnsylvrLIaPQiqlqSeknpksvvlvtakdielkivsiedkervsddvsglverRfgvllddaqfFvlkkkdfs 454 
                   e +++ + ++  L++PQ+ l Se +++sv +++a + +lk + i+d ++++d vsg v++R  + l+ +q F  + +++s
  CDO71276.1 2573 GEGVSPRKGHFCLLLKPQVVLRSEADTESVCILAAVQGKLKTFAIMDDSNAQDPVSGKVMNRNFAWLTGLQTFSPSMSNVS 2653
                  4667888889999************************************************************87777766 PP

>> Fmp27_GFWDK  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   8.8e-43     2e-39       2     156 .]    1853    2004 ..    1852    2004 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 8.8e-43
  Fmp27_GFWDK    2 YplplvhvpseqskslkalklkgdlviaEelveseeslRkievplvpsaeaeeeesfysvtvertltsvKlysdlevdiesseptrltWGksyqpa 97  
                   Yplpl+h+p++++  + al++++d+viaEe+  +e+++  i  ++v +++  ++    sv +++t+++vK y +  v++ ++  t ++WG sy pa
   CDO71276.1 1853 YPLPLLHIPAHTKGLQAALEFDSDVVIAEEM-GTEKAVEWINCDIVRAHNGMHGAAPISVRIPKTIMPVKSYANPAVRVMTDGVTDFSWGVSYGPA 1947
                   *********999999****************.6779**********99999999****************************************** PP

  Fmp27_GFWDK   98 iqqvmqaldkftkppvDpSpklgfWDKirllfhgkielkvkkdgelelalkgsrdPYki 156 
                   +q++m+++d+++ +p D Sp +gfWDK+rl+fh +i++++++  e++l++kgsrdPY++
   CDO71276.1 1948 TQDLMRIVDTLSHAPRDSSPAIGFWDKLRLVFHWRIKVDFAN--EVHLHMKGSRDPYEL 2004
                   ******************************************..*************86 PP

>> DUF2405  Domain of unknown function (DUF2405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   7.3e-27   1.6e-23      15     150 ..    1568    1701 ..    1556    1704 .. 0.96
   2 ?   -1.5   0.0      0.97   2.2e+03      32      54 ..    2696    2725 ..    2672    2760 .. 0.71

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 7.3e-27
     DUF2405   15 kvwarllsikdlrvdlrekkseeeksidveteairlriPhkfvvykiidniittvKaikqlkhrfktskneevlepkeekpkklPkiklkskrllfe 111 
                  + w++l ++ ++rv+l++  s+   +++v+ ++ rlriP+ fv+  +i +i  t+K++k+l++ + t+  +   +p ee++k++P+i++   rl++e
  CDO71276.1 1568 EEWEELARLPRWRVELTS--STMPLTVKVKGDSGRLRIPFDFVLADLILDINLTLKSVKHLVRMVGTGVYQDPPAPPEEDAKRVPNIQIDLGRLVVE 1662
                  57****************..***************************************************************************** PP

     DUF2405  112 leDDpFEaeLglIyriGlvEqkeRlakeeaFeekvkkir 150 
                    DD +Ea+LglI+r+G    + R+++ +aFe+kv++i 
  CDO71276.1 1663 AADDDLEARLGLIWRTGFGAARVRQERNDAFEAKVHTIV 1701
                  ***********************************9885 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.97
     DUF2405   32 e.......kkseeeksidveteairlriPh 54  
                  +       + ++++ +++ +t+ irl++P 
  CDO71276.1 2696 NdvtsvakNAQHTHAHLQNQTDLIRLHVPR 2725
                  133334446777777788888888888884 PP

>> Fmp27_SW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   1.9e-23   4.3e-20       1     103 []    1732    1834 ..    1732    1834 .. 0.98
   2 ?   -2.1   0.1       2.9   6.6e+03      16      69 ..    2414    2469 ..    2412    2474 .. 0.58

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 1.9e-23
    Fmp27_SW    1 arerLqehnsksWirrikaakekqkeeikeirerlygkeelskedkdknekilplpkrppLlrltiedldleldkpsfpledlpdFlhdvGkGvPkd 97  
                  ar+rLq+++s +W   ik+a+++q ++ k+  ++  g+ ++ ++   +  ++  +p +ppL+rl+++ l l + +psfp e lpd+lh++G G+P+d
  CDO71276.1 1732 ARYRLQQVHSVAWLAAIKQARARQYDNQKSFLHAREGSLQIVEDFAGDIVNVNRVPPTPPLVRLVFQGLLLFIAPPSFPYEALPDYLHEIGHGLPRD 1828
                  799*******************************************99************************************************* PP

    Fmp27_SW   98 teYslL 103 
                  t++slL
  CDO71276.1 1829 TRFSLL 1834
                  ****98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
    Fmp27_SW   16 rikaakekqkeeikeirerlygkeelskedkdknek..ilplpkrppLlrltiedl 69  
                  r+++ +++ +ee+++ +++  ++ + s+ d+d+  +  + +lp+  +Ll+ +i++l
  CDO71276.1 2414 RVEQLRQRAREEARKTKSQKHRHPSESSADEDEPARrgMNDLPRMIALLEGYISQL 2469
                  55666666666666665555554443333333332255888888888888777765 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00019      0.43      81     127 ..     190     239 ..     185     242 .. 0.87
   2 ?    0.9   0.1      0.21   4.6e+02       7      33 ..    2412    2437 ..    2408    2478 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
  DNA_pol_D_N  81 sekdellLEDesgrvrLsgsgiesek...lvtGvvvavlGvetengdfeV 127
                  s++ +l+LED++g v L++s++++ +   ++ G+   v+G  te+ ++ V
   CDO71276.1 190 SKEGKLCLEDQDGLVDLDFSQLDVPSeglFTEGCLALVEGDYTEDETLLV 239
                  56889***************998877776888************999988 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
  DNA_pol_D_N    7 faRleqlkprlleaakekwskeelkvn 33  
                   ++R+eql++r+ e+a+++  +++++++
   CDO71276.1 2412 TSRVEQLRQRAREEARKTK-SQKHRHP 2437
                   78***************99.5555544 PP

>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.1    0.0058        13      22      53 ..    2507    2535 ..    2506    2537 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0058
         SMP   22 eDAaavqaAEaraageartapgGvAaaaqaAA 53  
                  +D a ++ AE +  g  + + +G+Aa+aqaAA
  CDO71276.1 2507 RDQAQMALAELQQEG--G-KHKGPAASAQAAA 2535
                  68899**********..6.779*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.43u 0.30s 00:00:01.73 Elapsed: 00:00:00.50
# Mc/sec: 20051.96
//
Query:       CDO71277.1  [L=390]
Description: hypothetical protein BN946_scf184908.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-06   25.7   0.0    0.00089   18.6   0.0    2.9  3  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     5e-08   0.00089     240     307 ..      91     160 ..      40     163 .. 0.76
   2 !    3.0   0.0    0.0028        51     244     283 ..     198     240 ..     176     245 .. 0.79
   3 ?   -0.3   0.0     0.027   4.9e+02     202     236 ..     333     366 ..     314     382 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5e-08
                 S-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT.--EE.EEEEEE-SSS.--EEEE-TTSSEEEE CS
   Lactonase 240 ftgknsaaeIrlspdgkflyvSnRgadsiavfavdead.gtlt.lveevstegkfPRdfaldpsgklllv 307
                 ++g  s ++I++s +++ l ++n g++++++f++d++   +++ l + +s+eg+fP ++a++ +g+ l v
  CDO71277.1  91 VDGLFSQGAIQVSTKSNVLATANPGSSTVSLFSIDPRRpTNIShLGDPTSSEGEFPASLAFNADGSRLCV 160
                 33447999**************************998523344144669******************987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0028
                 --EEEEEE-TTSSEEEEEETS....STEEEEEEE-TTT--EEEE CS
   Lactonase 244 nsaaeIrlspdgkflyvSnRg....adsiavfavdeadgtltlv 283
                 ns ++I  s+dg+ l vS +g       +a ++v ++dg+l+  
  CDO71277.1 198 NSVSQIIFSEDGSKLLVSYKGpgtaPGYLASWDV-QKDGSLSAR 240
                 699*****************99988888999999.777888765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.027
                 SSEEEEEETTTTEEEEEEEE-TTTEEEEEEEEESS CS
   Lactonase 202 gkiaYvvnELsstvsvfsydeatgaleelqtvstl 236
                 ++++Yv+   s +v++++   a+g+ +++++v+  
  CDO71277.1 333 KDHLYVLDANSTSVDILAQT-AAGQARQISKVDIS 366
                 56788888888888888777.78888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2834.12
//
Query:       CDO71278.1  [L=354]
Description: hypothetical protein BN946_scf184908.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2355.02
//
Query:       CDO71279.1  [L=532]
Description: hypothetical protein BN946_scf184908.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-25   87.3   1.3    1.1e-24   86.4   1.3    1.5  1  DUF2985          Protein of unknown function (DUF2985)
    0.00098   17.5   0.0     0.0015   16.9   0.0    1.2  1  OATP             Organic Anion Transporter Polypeptide (OATP)
  ------ inclusion threshold ------
       0.02   13.7   0.0      0.032   13.0   0.0    1.3  1  Clostridium_P47  Clostridium P-47 protein
      0.043   14.2   1.9       0.52   10.8   0.2    2.7  3  SRP72            SRP72 RNA-binding domain
       0.15   12.1   0.2        1.5    8.9   0.0    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF2985  Protein of unknown function (DUF2985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   1.3     3e-28   1.1e-24       1      78 []     210     286 ..     210     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 3e-28
     DUF2985   1 kfvktplgflvtiYglnvvawgamlfLlLlgaapamninsarkkwieidsqilnALFcvtgfglaPwrfrdlylllri 78 
                 +fvktplg++++iYg++vv+wg  ++L+L+++++  +++ ++ +w+e+++q+ ++LF+ t++g++P+r++d+y++++i
  CDO71279.1 210 SFVKTPLGIVTAIYGFLVVFWGSGIVLFLAKMINL-HNDITQGFWVELCQQVETGLFTATSIGFIPFRIMDTYRICKI 286
                 59*********************************.658************************************986 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.3e-07    0.0015     225     322 ..     134     243 ..     129     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-07
                 xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 225 llllaaiplffFPke....lpkkkeerakkkseeesaekkeekkkkeksksse...e.....eelkslkdfpkalkrllknpifllvilssvfeillva 311
                 + ++++ pl f+ ++    lp+ ++++++k++ +e+ +++++ +++e++ +++   +     ++ ++++ +++ +++ +k p+ +++ + + + ++  +
  CDO71279.1 134 ANAIVVPPLSFYSRKpvivLPRLRKKKRRKQHDPEKGTHQDQASDDEDEYEDAldqHvedvlNKRDKFRRVMQGVWSFVKTPLGIVTAIYGFLVVFWGS 232
                 66788899999999999986655555555554444332222222222222222433144566999********************************** PP

                 xxxxxxxxxxx RF
        OATP 312 GfitFlpkylE 322
                 G++ Fl k + 
  CDO71279.1 233 GIVLFLAKMIN 243
                 ********986 PP

>> Clostridium_P47  Clostridium P-47 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     9e-06     0.032      67     152 ..      52     142 ..      39     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9e-06
  Clostridium_P47  67 lsagvvilnGktydiqggtatvevkLayspapaavsasgtkkelkvdttatds.....klaivavvaldkPesskagsldpidkallrgll 152
                      +s+g +i + +ty+i+g  a  +v+L+ +   a +s s + ++l  d++ +ds     ++ iv+++++ +P++s+ ++l++  +a++   l
       CDO71279.1  52 ASDGAIICDPHTYTIEGEQASLRVPLERHSERAGSSLSLALERLDHDQQHEDSledhhPDDIVEHLDVIDPQISTVSTLTNAANAIVVPPL 142
                      56888999999*******************999999999****************999999****************99999999987655 PP

>> SRP72  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.099   3.5e+02      28      39 ..     157     168 ..     126     180 .. 0.76
   2 ?   10.8   0.2   0.00015      0.52      20      44 ..     290     314 ..     283     315 .. 0.89
   3 ?   -3.8   0.0         5   1.8e+04      30      43 ..     485     498 ..     483     498 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.099
       SRP72  28 RkvklPKnydpg 39 
                 Rk k+ K++dp+
  CDO71279.1 157 RKKKRRKQHDPE 168
                 444444444444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00015
       SRP72  20 kkrkkkrkRkvklPKnydpgvtpDP 44 
                 k++  +r+Rk+ lP  ydp+  pDP
  CDO71279.1 290 KRKIARRRRKAGLPELYDPDDLPDP 314
                 445789******************9 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 5
       SRP72  30 vklPKnydpgvtpD 43 
                  k P  ++pg  pD
  CDO71279.1 485 LKCPAFHEPGMHPD 498
                 5789999****999 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.14   4.9e+02      29      62 ..     200     238 ..     197     255 .. 0.69
   2 ?    8.9   0.0   0.00042       1.5      53     100 ..     377     430 ..     370     440 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.14
  Phage_holin_3_6  29 eakragsgagllg...aagvlallalllllval..alal 62 
                      + +r+++g+  ++   ++ v a++++l+++++   +l+l
       CDO71279.1 200 KFRRVMQGVWSFVktpLGIVTAIYGFLVVFWGSgiVLFL 238
                      566777777777766677888888888877766433444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00042
  Phage_holin_3_6  53 lllvalalala.a...lwlaali..vaavllvlagvlalvglkklkkakplper 100
                      +ll + +++l+ +   +w   +      v  ++agvl+++g +k ++ k + er
       CDO71279.1 377 CLLSGTMWGLDrFarpAWTTGTTlpASFVAGIIAGVLIYWGGRKTRRTKEVTER 430
                      4555557888766776554443312479999***************98776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      832  (0.0464053); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 3514.23
//
Query:       CDO71280.1  [L=765]
Description: hypothetical protein BN946_scf184908.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.6e-152  506.8   0.0   2.2e-148  493.8   0.0    2.4  3  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
     8e-117  390.2   0.0   3.2e-109  365.2   0.0    2.7  3  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai
  ------ inclusion threshold ------
      0.026   14.3   6.9       0.04   13.7   1.2    2.8  2  SHOCT        Short C-terminal domain


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.2   7.3e+03      14      59 ..      17      62 ..      10      69 .. 0.68
   2 !   10.5   0.0   4.4e-05      0.26     147     178 ..     183     214 ..     131     254 .. 0.75
   3 !  493.8   0.0  3.7e-152  2.2e-148       1     323 [.     436     758 ..     436     759 .. 1.00

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.2
                 -----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B- CS
  Meth_synt_2 14 evrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhge 59
                 ev++a +++ +++ls++e  ka++++ ++     +e gvD +  g+
   CDO71280.1 17 EVKKAVEAYWANKLSADELTKAAADVKKASWTSLKERGVDLIPSGD 62
                 5666677777777777777777766666666666666777776665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 4.4e-05
                  HHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTS CS
  Meth_synt_2 147 eaaaqialalrdevkdLeaaGikviQiDepal 178
                  + + q+  + ++ + +L++aG++ +QiDep l
   CDO71280.1 183 SLLPQLISVYKQLLVALKEAGAESVQIDEPIL 214
                  45678999999*******************65 PP

  == domain 3  score: 493.8 bits;  conditional E-value: 3.7e-152
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  +pTttiGSfPqt+e+r+ara+++kgels+eeyek+i++eie+vvr qe++g+D lvhgepeR+dmv+yfge+l+gf+ft+ngwvqsygsr+vrppiiv
   CDO71280.1 436 FPTTTIGSFPQTKEIRQARAKLNKGELSQEEYEKFIEKEIENVVRFQERIGLDLLVHGEPERNDMVQYFGEQLEGFVFTQNGWVQSYGSRYVRPPIIV 533
                  8************************************************************************************************* PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGGHHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkadwaayldwa 196
                   dvsrp++mtv++s +aqslt+kp+kg+ltGpvtilnwsf+r dv+r+ +++q+alalrdev dLe+aGik +Q+DepalreGlpl+kadw+ayl+wa
   CDO71280.1 534 SDVSRPTPMTVHWSSYAQSLTSKPMKGMLTGPVTILNWSFPRADVSRELQCKQLALALRDEVIDLEKAGIKAVQVDEPALREGLPLRKADWDAYLSWA 631
                  ************************************************************************************************** PP

                  HHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-STS CS
  Meth_synt_2 197 veafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapker 294
                    +f+++t+++ d  q h+H+Cys+++di ++i+ald+Dvi+ieas+sd++ll+++++ +y +++g+Gvydihsprvps eei++++ ++l ++p e 
   CDO71280.1 632 LPSFKIATAGVTDALQTHSHFCYSDFDDIFPSIQALDADVISIEASKSDMKLLNTFKHYGYSNQIGPGVYDIHSPRVPSEEEIKERLAAMLSILPSEL 729
                  ************************************************************************************************** PP

                  B-BB-SS-STTS-HHHHHHHHHHHHHHHH CS
  Meth_synt_2 295 lwvnPdCGLktrkreearaalknmvdaAk 323
                  l+vnPdCGLktr++ e+ a+l n v+aA+
   CDO71280.1 730 LFVNPDCGLKTRGWAETEASLINLVNAAR 758
                  ***************************96 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.2   0.0  5.4e-113  3.2e-109       2     308 ..       4     314 ..       3     319 .. 0.97
   2 ?   -0.9   0.0      0.15   9.1e+02      12      59 ..     446     493 ..     438     501 .. 0.84
   3 !   21.6   0.0   2.2e-08   0.00013     148     273 ..     556     688 ..     526     702 .. 0.73

  Alignments for each domain:
  == domain 1  score: 365.2 bits;  conditional E-value: 5.4e-113
                  EB-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-HHHHHHHHTT---GGGTT.SSSSSHHHHHHHHHS CS
  Meth_synt_1   2 ssilGfPriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDhvLdtavllgaiPerfkleekkeeldtyFalaRG 99 
                  ss+lGfPriG++Re kka+e+yw++k+s++eL+k a++++++ w+++ke g+dlip++df+lYDhvLd+++++++iP+r+   ++ + ld yFa++RG
   CDO71280.1   4 SSVLGFPRIGANREVKKAVEAYWANKLSADELTKAAADVKKASWTSLKERGVDLIPSGDFTLYDHVLDHSAAFNVIPKRYLG-KGLSPLDVYFAMGRG 100
                  689*****************************************************************************65.899************ PP

                  C....TTCT--EEEESTTSS-EEEE-BE-SS.----S-THHHHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC....-HCHHHHHHHHHHHHHHHH CS
  Meth_synt_1 100 k....kdvaalemtkwFntnYHYlvPelekdtefklaseklleevkeakalgieakpvllGpltflkLskakeek...veklellekLlpvYkellee 190
                  +     dv+a+em+kwF++nYH++vPe++++tefkl+ +k+lee++eak lgi ++pv++G +tfl+L+ka++++   +++ +ll++L++vYk+ll  
   CDO71280.1 101 RqagdVDVPACEMKKWFDSNYHFVVPEFSEETEFKLNFNKALEEYREAKDLGIITRPVVIGAVTFLALGKAAKDArpgFQPMSLLPQLISVYKQLLVA 198
                  9998889***************************************************************99988899******************** PP

                  HHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHTCCTTTSEEEEE--SS-.CCHHHHHTTSSTSEEEEETSSHCHHHHHHHHCTT.TTSEEEEEEE CS
  Meth_synt_1 191 LkeagvewvqidEPalvldlekeelealkeaYeelakekkelklllatyFdsvaealellaelpveglglDlvraeenlealkkaglpedkvLsaGvi 288
                  Lkeag+e vqidEP+lvld ++   +++ ++Y+el  +  ++kl+l+ty+++++++++++a+lpv++l++Dl ra+++l+++ +a  p++ vLs+G++
   CDO71280.1 199 LKEAGAESVQIDEPILVLDSASLYEKQFAQTYAEL--APVSPKLVLTTYYGRLDSNVNFVAKLPVAALHIDLDRAPTQLDEVIAAVKPTNLVLSLGLV 294
                  ***********************************..79*********************************************99************ PP

                  -SSS-B---HHHHHHHHHHH CS
  Meth_synt_1 289 dGrniWradlekalelleel 308
                   GrniW++d+++al+l ++ 
   CDO71280.1 295 SGRNIWKTDFQAALKLGQKA 314
                  *************9987665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.15
                  TTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES CS
  Meth_synt_1  12 ekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvn 59 
                  + +e+++a  +  kg++s+ee ek  ++  ++ ++ q++ g+dl   +
   CDO71280.1 446 QTKEIRQARAKLNKGELSQEEYEKFIEKEIENVVRFQERIGLDLLVHG 493
                  4689999999999************99999999999999999987665 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 2.2e-08
                  GGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSG..CHHHHHH.HHHHHHHHTCCTTTSEEEEE--... CS
  Meth_synt_1 148 ieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvldl..ekeelea.lkeaYeelakekkelklllaty... 239
                    +k +l Gp+t l  s  + +  +++   ++L  + ++ + +L++ag++ vq+dEPal   l  +k++++a l+ a  +++ ++++++  l+t    
   CDO71280.1 556 KPMKGMLTGPVTILNWSFPRADV-SRELQCKQLALALRDEVIDLEKAGIKAVQVDEPALREGLplRKADWDAyLSWALPSFKIATAGVTDALQTHshf 652
                  456889***********998887.7777888998888888889****************987755455555415667888888888888888875444 PP

                  .SS-.CCHHHHHTTSSTSEEEEETSS.HCHHHHHHH CS
  Meth_synt_1 240 .FdsvaealellaelpveglglDlvr.aeenlealk 273
                   + ++++ +  + +l+ + ++++  +   + l+++k
   CDO71280.1 653 cYSDFDDIFPSIQALDADVISIEASKsDMKLLNTFK 688
                  467777777777777777777777763333344444 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.5     0.017     1e+02       2      16 ..     141     155 ..     140     156 .. 0.91
   2 ?   13.7   1.2   6.7e-06      0.04       2      22 ..     449     469 ..     448     469 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.017
       SHOCT   2 aLekLkeLyarGeIt 16 
                 aLe+++e ++ G+It
  CDO71280.1 141 ALEEYREAKDLGIIT 155
                 89************9 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.7e-06
       SHOCT   2 aLekLkeLyarGeIteEEFea 22 
                 ++++ ++ + +Ge+++EE+e+
  CDO71280.1 449 EIRQARAKLNKGELSQEEYEK 469
                 78999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4991.68
//
Query:       CDO71281.1  [L=398]
Description: hypothetical protein BN946_scf184908.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-31  106.2   0.3    1.2e-30  105.6   0.3    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
      5e-21   75.0   0.0    7.1e-21   74.5   0.0    1.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.1e-05   26.4   0.0    1.9e-05   25.7   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.087   12.9   0.1       0.19   11.8   0.1    1.5  1  TmoB          Toluene-4-monooxygenase system protein B (TmoB)


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.3   2.6e-34   1.2e-30       2     109 .]      28     138 ..      27     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 2.6e-34
                 TEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS.S-SSSBS CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs.ldGgfae 97 
                 +evl+ vk +giCgsD+h+l  g   ++ v+ p++lGHE +G+v +vgp+vk+lkvGdrV++ep  +c  C++Ck+g+++lC+e  +  +  +dG++a+
  CDO71281.1  28 DEVLVAVKKTGICGSDVHYLVAGriGKFIVEKPMVLGHESAGVVTKVGPKVKHLKVGDRVAMEPGATCRVCDDCKRGRYELCPEIIFAATPpYDGTLAR 126
                 89****************99988788999*********************************************************999999******* PP

                 EEEECGGGEEEE CS
       ADH_N  98 yvvvpekklvkl 109
                 y+ +p++ ++kl
  CDO71281.1 127 YYPIPADLCYKL 138
                 ******999985 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.6e-24   7.1e-21       7     129 ..     208     346 ..     205     347 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.6e-24
                 HHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET.............TTCHHHHHHHHHT....TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEE CS
  ADH_zinc_N   7 vqlAkalGa.eviavdsseeklelakklGadeviny.............keadlverikelt....ggegvdvvfecvGsgatleaalkllkpgGrlvv 87 
                 v++A+alGa +++avd+ + +le+akk+ a+e++++             ++ + ++++++l     g+ g+d+v++++G++ ++++ + ++k+gG +  
  CDO71281.1 208 VAVARALGAsRIVAVDIVPARLEFAKKYAATETYTPpkleqgesrlaysER-NAKAMMQQLGieerGPAGIDIVVDASGAEVSIQTGIYIAKHGGSFIQ 305
                 889*************************************99999997544.8999999999***99******************************** PP

                 CSCTSSEEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  88 vGggkgeeefdlrnlllkeksilGsllgslreefkealdlla 129
                  G+g+ e ++++  ll ke++++Gs++++ + +++ a+ l++
  CDO71281.1 306 LGMGQAEVTIPVTTLLIKEINFKGSFRYG-PGDYQLAIGLVS 346
                 *****************************.9****9998876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.3e-09   1.9e-05      17     132 ..     271     383 ..     255     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.3e-09
                   HH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH..----EEEEE CS
  ADH_zinc_N_2  17 atggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk..lrpvvdrvf 110
                   + g++g+D+v+d+ g e  ++  + + ++gG ++++g g  +  +++  ++  k+ ++k +f      + + d  +    l+++Gk  l+p v+++f
    CDO71281.1 271 ERGPAGIDIVVDASGAEVSIQTGIYIAKHGGSFIQLGmG-QAEVTIPVTTLLIKEINFKGSFRY----G-PGD-YQLAIGLVSQGKidLKPLVTHRF 360
                   55789**********88887777756688899*****55.466666666665555555554444....4.677.999*********9999******* PP

                   EGGGHHHHHHHHHSS--S.SEEE CS
  ADH_zinc_N_2 111 pleeaaeAhrylesgrar.GKiV 132
                   ++++a +A++  ++g+   GK V
    CDO71281.1 361 SFDQAIQAFQTTRAGKSEdGKPV 383
                   ************99987657766 PP

>> TmoB  Toluene-4-monooxygenase system protein B (TmoB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.2e-05      0.19      25      54 ..      71     100 ..      64     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
        TmoB  25 mdqVaekvahhavGrrvrpkpgaplrVrrq 54 
                 + +V+ kv h  vG rv+ +pga+ rV ++
  CDO71281.1  71 VTKVGPKVKHLKVGDRVAMEPGATCRVCDD 100
                 78999**********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2782.82
//
Query:       CDO71282.1  [L=519]
Description: Glycosyltransferase Family 32 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-22   78.3   0.1      1e-21   77.4   0.1    1.4  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
      0.042   13.2   1.1       0.25   10.6   0.0    2.1  2  TcdA_TcdB       TcdA/TcdB catalytic glycosyltransferase domai
       0.12   11.7   0.1       0.18   11.2   0.1    1.2  1  Caps_synth      Capsular polysaccharide synthesis protein
       0.67    9.6   4.5        1.6    8.4   4.5    1.6  1  CLLAC           CLLAC-motif containing domain


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.1   2.2e-25     1e-21       1      93 [.      74     157 ..      74     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 2.2e-25
  Gly_transf_sug   1 perekkaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsiga 93 
                     p+++ +  +s+++ +p y+++++++            ef+++++ wf++++++++++i+++D++R+++Ly+yGGiY+D+D+ +l++l ++++ 
      CDO71282.1  74 PDKWVNISQSCRDMNPGYEYMLWTDAGA--------REFIAQHYNWFLDTFDNYKYPIQRADAIRYFVLYHYGGIYIDLDIGCLRPL-DPLLV 157
                     78999********************988........9**************************************************.88875 PP

>> TcdA_TcdB  TcdA/TcdB catalytic glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.041   1.8e+02       2      40 ..      63     101 ..      62     112 .. 0.84
   2 ?   10.6   0.0   5.5e-05      0.25     201     221 ..     126     146 ..     125     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.041
                 EEEEE--SS---HHHHHHHHHHHHHTTTSEEEEEE-TT- CS
   TcdA_TcdB   2 klHfvwigGkitdiqedYinvwldvnedydinlwvDsnA 40 
                 ++H  w    ++d   +  +   d+n++y+  lw D  A
  CDO71282.1  63 IIHQTWKSETLPDKWVNISQSCRDMNPGYEYMLWTDAGA 101
                 68888888888888888888889*************877 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHHHHH-EEEE-TT- CS
   TcdA_TcdB 201 sDivRllvLkelGGlyldvDm 221
                 +D +R  vL+ +GG+y+d+D+
  CDO71282.1 126 ADAIRYFVLYHYGGIYIDLDI 146
                 599****************95 PP

>> Caps_synth  Capsular polysaccharide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     4e-05      0.18      67     137 ..      79     149 ..      41     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
  Caps_synth  67 kciksvkknaedyevvlLtkdNieeYvdlp.dfiieklekgkisaahfSDllRleLLkkyGGvWiDaTiflt 137
                 +  +s +  +++ye++l t++  +e++  + ++ ++ +++ k    + +D +R  +L  yGG+ iD  i + 
  CDO71282.1  79 NISQSCRDMNPGYEYMLWTDAGAREFIAQHyNWFLDTFDNYKYP-IQRADAIRYFVLYHYGGIYIDLDIGCL 149
                 566889999999**************988735566777776655.5679*****************766665 PP

>> CLLAC  CLLAC-motif containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.5   0.00035       1.6       9      26 ..      10      28 ..       9      31 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00035
       CLLAC  9 LvCLLACiitTaigVLi.l 26
                L+CLLA i+  +++VL  +
  CDO71282.1 10 LLCLLATILVGTVVVLSsI 28
                89**************655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3650.88
//
Query:       CDO71283.1  [L=376]
Description: hypothetical protein BN946_scf184908.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-19   70.8   0.0      2e-19   70.2   0.0    1.2  1  PIN_4     PIN domain


Domain annotation for each model (and alignments):
>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   1.1e-23     2e-19       1     127 [.      39     175 ..      39     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 1.1e-23
       PIN_4   1 fVlDTnvlLhdpealksf.......keehdvviPitVleELdklKkgsserelarlarqanrlldellekesgrlkvqtsaeelpeee.......sese 85 
                 +V+DTnvl++ + +l++f          +   iP +Vl ELd+lK++ +   l+  arqa+++l + +++   ++k+qt++e l +++        + +
  CDO71283.1  39 VVVDTNVLIDYCGVLEQFcadvekaGYPIMMLIPSVVLGELDGLKNRPE---LQWFARQATTWLLKKVKE-RTTVKLQTAKETLCPDPaarpaenDDVR 133
                 69********************9766667789****************6...************999875.77999****9999987446776643378 PP

       PIN_4  86 knDnrIlavalelkeekpdrkvvLvskDinlrikAkalgiea 127
                 knD +I +++l+++ + +    +Lvs D+ l++  + +g+e+
  CDO71283.1 134 KNDLAIRDCCLYFADRSRGYGALLVSMDKVLCLECQKEGLET 175
                 **************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2590.41
//
Query:       CDO71284.1  [L=643]
Description: hypothetical protein BN946_scf184908.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-05   23.3   0.0    0.00022   22.0   0.0    1.8  1  CTD_bind    RNA polymerase II-binding domain.
     0.0028   18.1   0.5      0.018   15.5   0.0    2.5  2  CFIA_Pcf11  Subunit of cleavage factor IA Pcf11
     0.0037   17.7   5.6      0.024   15.1   0.9    2.5  2  Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
  ------ inclusion threshold ------
        0.6   11.1   3.9        1.7    9.7   0.5    2.7  2  zf-C2H2_4   C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.8e-08   0.00022       1      58 [.      94     147 ..      94     150 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.8e-08
    CTD_bind   1 kLnllYLaNdvlqnskrkqkdefapaFapvlpeafadaykkapekikkklkrllniWe 58 
                 kL+ +YL++ + +n +    d +a  Fap++ ++f  +y+  + ++++k++++l  W+
  CDO71284.1  94 KLPAFYLLDAISKNVY----DPYARHFAPIVANLFIETYEAVDVTTRSKMEEMLLTWR 147
                 89************97....9*******************999**************7 PP

>> CFIA_Pcf11  Subunit of cleavage factor IA Pcf11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06     0.018       2      84 ..     451     518 ..     450     522 .. 0.66
   2 ?   -2.0   0.1       1.2   5.3e+03      20      61 ..     541     586 ..     539     607 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
                 XXXXXXXXXXBXBXXXXXHHHHHTXXTHHCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHT-EEEE-TT CS
  CFIA_Pcf11   2 kkttttakniQsRnWYLddsqWvkfkddeivstksssnktskkasknaatqassssanesseksentslsadlekkyVvVPes 84 
                  k++++  +  sR+W+++  +W++  d  +v+ k   + ++++++ +aa++a++                a+l++ +VvVP  
  CDO71284.1 451 RKASQAVGRGYSRSWFISLDDWIHG-DSVDVKGKGRADGRTSSSKVAAAEEAAQR--------------DAELRAMHVVVPPG 518
                 5677888899*************96.55555555555555555555554444322..............23488888888865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
                 HHHHH....TXXTHHCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  CFIA_Pcf11  20 dsqWv....kfkddeivstksssnktskkasknaatqassssanes 61 
                 +++Wv      kdd i   +   ++ ++k++ +++  +++ss ++s
  CDO71284.1 541 EEEWVwrnaVTKDDRIYHATCHAEAVASKSTLAVRLRNETSSRSRS 586
                 5666632223577777777766666666666666555555554444 PP

>> Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.9   5.4e-06     0.024       6      27 .]     425     447 ..     422     447 .. 0.93
   2 ?    4.4   0.3     0.012        54       3       8 ..     526     531 ..     525     537 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.4e-06
  Zn-C2H2_12   6 CseqFpknvd.qdeFeeHVesHF 27 
                 C+++Fp+ ++ +  Fe+H ++HF
  CDO71284.1 425 CGVRFPSSTSgKKQFEDHLDMHF 447
                 ******99886889********* PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
  Zn-C2H2_12   3 CPlCse 8  
                 CP+C+e
  CDO71284.1 526 CPICKE 531
                 *****9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00037       1.7       2      23 ..     421     446 ..     420     447 .. 0.89
   2 ?    1.6   0.2      0.15   6.8e+02       2      12 ..     525     535 ..     524     537 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00037
   zf-C2H2_4   2 kCpiCgksFsskka....LlrHlkth 23 
                 +C++Cg +F+s+++    + +Hl +h
  CDO71284.1 421 QCKQCGVRFPSSTSgkkqFEDHLDMH 446
                 8*********9999899999999888 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.15
   zf-C2H2_4   2 kCpiCgksFss 12 
                  CpiC++  +s
  CDO71284.1 525 SCPICKEHLKS 535
                 5****887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4435.39
//
Query:       CDO71285.1  [L=191]
Description: hypothetical protein BN946_scf184908.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-29  100.4   4.8    6.3e-16   58.8   1.3    2.1  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   1.3   3.5e-20   6.3e-16       1      76 []      12      88 ..      12      88 .. 0.91
   2 !   43.2   0.1   2.6e-15   4.6e-11      10      76 .]     111     179 ..     100     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 3.5e-20
                  CSTTEEEEEETTTEEEEEESSEEEEEE-CTT...SEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  1 iPvgvrvsikggqlvlvlGpkgeltreipeg...vtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  iP+gv+v+ik+ ++++v+Gp+g+lt ++++    + ++ + + nkv  +v++g +k+ + +++t++sli nmi+GVt+g
    CDO71285.1 12 IPEGVEVNIKS-RVIMVKGPRGTLTKNVRHIdmdIRLTKSSKANKVSLAVWQGGRKHVA-CLRTIKSLIVNMITGVTKG 88
                  8*********6.**************999955226666778889***************.*****************98 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 2.6e-15
                   ETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  10 kggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVteg 76 
                    g++++++lG+k  + +++ egvtv   +  +++++ +++gid+++v    A i+ ++++ n++i+++ +g
    CDO71285.1 111 RGVEIRNFLGEKIVRHVQMLEGVTVS--ESKAQKDELILEGIDIQNVsqsaASIQGICRVRNKDIRKFLDG 179
                   4599******************9999..99**************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1323.48
//
Query:       CDO71286.1  [L=268]
Description: hypothetical protein BN946_scf184908.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-27   95.3   1.0    4.6e-27   94.3   1.0    1.5  1  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)
    5.9e-12   45.9   1.2    1.4e-11   44.7   1.2    1.6  1  PEMT      Phospholipid methyltransferase
    3.8e-06   26.6   2.3    6.6e-06   25.8   2.3    1.4  1  NnrU      NnrU protein
     0.0038   16.8   1.0     0.0061   16.1   1.0    1.4  1  DUF1295   Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   1.0     1e-30   4.6e-27       3      93 ..     155     246 ..     153     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 1e-30
        ICMT   3 llvllaqalrlvvmatlGeiwttrvai..lpdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllf.vRikeEekaLa 93 
                 ++ l++qalr+v+m ++ +++++ +a   +++h lv++g+y+++rHP+Y++f++++l+t+l+l n+  +++vl+a+ ++++f  Rik+Ee +L+
  CDO71286.1 155 VMTLVGQALRSVAMIHAASNFSHVLAYrkAEGHVLVTDGIYRWFRHPSYAGFFYWALGTQLVLQNP--VSFVLFAAILWRFFsRRIKAEEIYLI 246
                 5789**********************99899***********************************..************************97 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   1.2   3.1e-15   1.4e-11       4     106 .]     151     253 ..     149     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.1e-15
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmd..klvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 ++G+++ ++g++l+  ++ +   +   +  +  ++ +   lvt+GiYr++++P y g +   lG+ L+ +++++++l + +l+ ++  ++  Ee +l +
  CDO71286.1 151 AVGVVMTLVGQALRSVAMIHAASNFSHVLAY--RKAEghVLVTDGIYRWFRHPSYAGFFYWALGTQLVLQNPVSFVLFAAILWRFFSRRIKAEEIYLIR 247
                 6899999999999988888888777777878..4444459**********************************99999999999999999******** PP

        PEMT 101 iYgkre 106
                  +g+++
  CDO71286.1 248 FFGDDY 253
                 **9865 PP

>> NnrU  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   2.3   1.5e-09   6.6e-06      61     149 ..     141     235 ..     120     256 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.5e-09
        NnrU  61 llWeppawlrhlalllmlvafillaaall....pgnplsvglka...dlaetgivritrHPmllgvaiWAlaHllanGdlasvllfgglllwalvg 149
                 + W+  + ++++ ++++lv+  l  +a++    +  ++ + +ka    l + gi+r+ rHP  +g+  WAl+  l+  +  s++lf+++l w  ++
  CDO71286.1 141 PQWKHYPHVTAVGVVMTLVGQALRSVAMIhaasNFSHVLAYRKAeghVLVTDGIYRWFRHPSYAGFFYWALGTQLVLQNPVSFVLFAAIL-WRFFS 235
                 5566666666666666666655443333300003334444555578678899**********************************9975.65555 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.0   1.4e-06    0.0061     120     202 ..     149     232 ..     119     260 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-06
     DUF1295 120 ldviglalwlvgivlealaDqQ.lsaf...kkdpankgk.vldsGLwrysRHPNYfgealiWwglflialealeglealaiagplllt 202
                 +  +g++++lvg +l  +a     s+f    +  +++g+ ++++G++r+ RHP Y g + + +g  l+  + ++     ++++++l  
  CDO71286.1 149 VTAVGVVMTLVGQALRSVAMIHaASNFshvLAYRKAEGHvLVTDGIYRWFRHPSYAGFFYWALGTQLVLQNPVSF----VLFAAILWR 232
                 5567777777777776666544134553343334567886899************99776667777766555444....455545444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1911.10
//
Query:       CDO71287.1  [L=750]
Description: hypothetical protein BN946_scf184908.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-50  171.5   0.0    2.3e-50  170.9   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.8e-15   56.7   0.0    4.5e-15   55.5   0.0    1.7  1  EFG_II       Elongation Factor G, domain II
    8.2e-15   54.6   0.0    5.5e-07   29.5   0.0    2.5  2  EFG_C        Elongation factor G C-terminus
    3.9e-06   27.2   0.0    7.2e-06   26.3   0.0    1.5  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    8.4e-05   22.6   0.0    0.00023   21.2   0.0    1.8  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.032   14.0   0.0    1.3  1  RF3_C        Class II release factor RF3, C-terminal domain
       0.16   11.3   0.0       0.54    9.5   0.0    1.8  1  AIG1         AIG1 family


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0     9e-54   2.3e-50       6     194 .]       1     299 [.       1     299 [. 0.94

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 9e-54
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 +++++h+D+GKtTLt+++l +++  s++g+++++++++D+l++ErergiTi+sa i ++  +k  ++nliDtPGH+dF  ev+ + rv+Dgav+++dav
  CDO71287.1   1 MALVAHIDSGKTTLTESILLQSQFLSSAGSVDTGSTTTDFLPAERERGITIQSASIPVK--WKGWTFNLIDTPGHADFGMEVESASRVVDGAVVLIDAV 97 
                 6789****************************99*************************..************************************** PP

                 TBSTHHHHHHHHHHHHTTTE.EEEEEESCGSTHHHHHHHHHHH.HHHHHHH................................................ CS
    GTP_EFTU 105 eGvepqteevlrlalkegvp.iivfiNKmDrlkaelkeiveev.kqklsrk................................................ 153
                 eGve+qt+ v+r++ +++v+ +i+f+NK+Dr++a+++ +   v  ++l+ +                                                
  CDO71287.1  98 EGVEAQTKGVWRQLDRYDVRsRILFLNKLDRPGASFRSSMLSVlANRLHPRpmaislpiasfdpqdyaraepgiqglvdlvnwevwkydsdgkasvhal 196
                 ********************************99999876554155665559*********************************************** PP

                 ...............................................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 154 ...............................................................eeklekygekgekevpvvfgSalkgegvktllealv 189
                                                                                + +l++++ ++ +  pv++gSa+k  g + l++++ 
  CDO71287.1 197 prtmqelegselfppshpivphllparvtmldnlaqvseslldtllelpedpsaylsvqasdiMPHLRAAALRN-DVLPVLCGSAFKHIGTELLMNYVG 294
                 *********************************99999999999999998888888888888877777777777.5********************999 PP

                 HHSHH CS
    GTP_EFTU 190 ellps 194
                 ellps
  CDO71287.1 295 ELLPS 299
                 99885 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.8e-18   4.5e-15       2      74 ..     414     484 ..     413     485 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.8e-18
      EFG_II   2 PePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 P+P++s+++ p+s ad + +++aL+ l++ Dp++r+e+ e  +++++ G+G lHleiv +rl++e kv++e+g
  CDO71287.1 414 PPPLMSVSVIPHSHADLEPVEQALSALARTDPSVRFETHE--GQLLVHGLGALHLEIVESRLREEWKVNFEFG 484
                 99**********************************9998..8**************************9987 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.1e-08     8e-05       2      38 ..     624     660 ..     623     666 .. 0.93
   2 !   29.5   0.0   2.1e-10   5.5e-07      40      85 ..     694     739 ..     680     743 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.1e-08
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqd 38 
                 l+EP+ +++i+v+e+ vg+v++dl ++ Ge++d +  
  CDO71287.1 624 LMEPYIRLKISVDESSVGRVVEDLGEHGGEVLDLDAA 660
                 8*******************************99876 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 2.1e-10
                 TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C  40 sgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdk 85 
                     +i a +Pl+++++f+t+Lr+l+ G+g f+me +g++ v ++ 
  CDO71287.1 694 RMKRTILAVAPLSKMLDFSTRLRALSGGHGLFQMENDGFKRVSSQR 739
                 55678999*********************************99886 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.8e-09   7.2e-06       4      73 ..     333     396 ..     330     397 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.8e-09
                  EEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   4 algrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  +++rvysGtlk    v +   + ++k   +++s+l+   + e ++v+  + G   a+ gl+ + ++Gdtl
   CDO71287.1 333 TFVRVYSGTLKNQSSVLN--ASRNQK---EKVSKLLLLYAAEAQEVDSLPFGSVGAVLGLKYT-RTGDTL 396
                  79****************..888899...*********************************7.*****9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.8e-08   0.00023       5     113 ..       4     124 ..       1     125 [. 0.65

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.8e-08
                 EESTTSSHHHHHHHHH..............T....STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEE CS
    MMR_HSR1   5 vGrpNvGKStLinalt..............g....ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvd 84 
                 v +  +GK+tL  +++              g    +   ++++ g T++   + vk+kg  ++l+DtpG         ++g ++++  + +d +++++d
  CDO71287.1   4 VAHIDSGKTTLTESILlqsqflssagsvdtGstttDFLPAERERGITIQSASIPVKWKGWTFNLIDTPG-HA------DFGMEVESASRvVDGAVVLID 95 
                 5566789999999998666555555444441322124466777799999999999999999********.33......3555555555647******** PP

                 TTTTCSHHHHHHHHHHHHH.TTSEEEEEEE CS
    MMR_HSR1  85 aseeklkpldeeleellee.akkplilvln 113
                 a  e+++++ + + + l++ + +  il ln
  CDO71287.1  96 AV-EGVEAQTKGVWRQLDRyDVRSRILFLN 124
                 88.657666665555544433344555555 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-05     0.032      47      84 ..     452     489 ..     428     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                 TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S-- CS
       RF3_C  47 ageelilgaVGqLQfeVveeRlknEYgvevrleslpys 84 
                 ++ +l++  +G+L +e+ve+Rl++E++v+ ++ + ++s
  CDO71287.1 452 HEGQLLVHGLGALHLEIVESRLREEWKVNFEFGRRRVS 489
                 357899999********************999876665 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00021      0.54      26      71 ..      40      85 ..       1      96 [. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
                SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHH CS
        AIG1 26 FesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkisk 71
                F    +++++t ++ +   +w+g + n iDTPg  d   + +++s+
  CDO71287.1 40 FLPAERERGITIQSASIPVKWKGWTFNLIDTPGHADFGMEVESASR 85
                6666688999999999999**************9998877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4949.33
//
Query:       CDO71288.1  [L=381]
Description: hypothetical protein BN946_scf184908.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2822.63
//
Query:       CDO71289.1  [L=448]
Description: hypothetical protein BN946_scf184908.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-33  113.6  17.0    9.6e-30  103.7  15.1    2.1  2  MFS_1     Major Facilitator Superfamily
    0.00048   19.2   0.5    0.00097   18.2   0.5    1.5  1  MFS_5     Sugar-tranasporters, 12 TM
     0.0074   14.8   2.3      0.012   14.1   2.3    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.26   10.8   0.4        1.2    8.6   0.1    2.0  2  Stevor    Subtelomeric Variable Open Reading frame


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7  15.1   2.1e-33   9.6e-30      35     326 ..      35     360 ..      26     365 .. 0.74
   2 !    9.7   0.0   8.3e-05      0.37     118     164 ..     383     429 ..     376     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 2.1e-33
       MFS_1  35 gllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 gl+ +++++++++ s+ +G+lsd++Gr+r+lll++++ +l++l++l  s+ + + l++rv+ Gl + + + +++a+++d++++e+r++a++ ++++f++
  CDO71289.1  35 GLMGSVFSALQWFISPRIGALSDKYGRKRILLLTMIGNILSALVWL-KSTTFaTYLLSRVIGGLSE-GNVQLAIAILSDVTSPENRAKALAHVGIAFAI 131
                 899**************************************44444.366676************7.7778888************************* PP

       MFS_1 133 Gailgpllggllasslg..........Wravfyilaivslla....fvlfllllpeepperkrkspkeee......................kgtgpap 195
                  +i+gp++g+++as             +  v+ + a++++l+     ++ ++ lpe++ +++ + p++                        + t    
  CDO71289.1 132 CFIIGPPIGAYFASRPLpssitasgieF-NVYAVPAALTVLLltveTIFLIVALPETRGKHAQSVPAKAAtngaanetsngkangvngtatrQ-TS--- 225
                 *************777677877777663.2366666666666433455777999999999999999999899999998888887776666421.22... PP

       MFS_1 196 lvp......awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr....lgrrrrlllallll 284
                           +++l++ +      +++l+ + +fsg+ ++l++++ + +++++  ++g+l++ +++++   all g +++r    +g  ++   ++ ++
  CDO71289.1 226 --RqatvaeRIQMLKTLQ-----HLHFLFLG-IFSGVEFTLTFLTFDLFDWNN-KENGALIGSIGIIS---ALLQGGYVRRalakVGEGNMARRGIMSC 312
                 ..1222234566666666.....33444443.88888888888889******5.99997777777777...6666666766666677777777777777 PP

       MFS_1 285 llaalglallavt...ssavllll...vlvliGfglgfvfpsllalas 326
                 ++++++l +l++    + +v++ l   + +++ +++++v+ sl+a+as
  CDO71289.1 313 AVGLIFLTILPNLvatHRTVAIRLlqaAAACMAMTSATVVNSLTAYAS 360
                 777777777777733333333333566666677777777777777765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 8.3e-05
       MFS_1 118 ergraigllsagfslGailgpllggllasslgWravfyilaivslla 164
                  +g+a+g + ++ +lG +lgp+l+ + +  +g ++++ + a++++ +
  CDO71289.1 383 AKGKALGKFRSSGQLGRALGPILACASYWTFGPSLTYAVSAVAMFAL 429
                 689**********************999999***********99987 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.5   2.2e-07   0.00097      88     238 ..      51     206 ..      29     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.2e-07
       MFS_5  88 ivgsladkfgrkracltyailyilacit.khsgeykvlmigrvlggiatsllysafesw.lvaehnkrgfddsllsivfskaiflgnslvaiiag..la 182
                  +g+l+dk+grkr  l+  i  il+ +   +s+ +   ++ rv+gg++   +  a+     v   ++r      ++i+f+   ++g  + a  a   l 
  CDO71289.1  51 RIGALSDKYGRKRILLLTMIGNILSALVwLKSTTFATYLLSRVIGGLSEGNVQLAIAILsDVTSPENRAKALAHVGIAFAICFIIGPPIGAYFASrpLP 149
                 59*******************99988662688999************987655544432146667778889999***************9999864488 PP

       MFS_5 183 anllaerlgfgpvapfdlalsvlli..gaviilsswsenygdtsekkdlkesfkkaak 238
                 + + a  + f  v    +al+vll+   ++ ++ + +e  g+ ++  + k+  + aa+
  CDO71289.1 150 SSITASGIEF-NVYAVPAALTVLLLtvETIFLIVALPETRGKHAQSVPAKAATNGAAN 206
                 99********.6766777777666510556678899*****99999988888777765 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.3   2.7e-06     0.012      98     215 ..      52     175 ..      34     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-06
       TRI12  98 mgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelms..nktkflglliv..sipvvvtsglspylgqr.l.. 189
                 +g l+d++gr+ +++lt i  ++ a+v   +t f t l +  + g++ g    +  ++ ++ s  n++k l  + +  +i  ++   ++ y+  r l  
  CDO71289.1  52 IGALSDKYGRKRILLLTMIGNILSALVWLKSTTFATYLLSRVIGGLSEGNVQLAIAILSDVTSpeNRAKALAHVGIafAICFIIGPPIGAYFASRpLps 150
                 799*************************************************99999999998446666666554411344556666788888874221 PP

       TRI12 190 aiqgswrwifyiyiitsaiavllivv 215
                 +i       f +y + +a++vll+ v
  CDO71289.1 151 SITA-SGIEFNVYAVPAALTVLLLTV 175
                 3433.345689999999999998766 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.21   9.2e+02     232     260 ..     158     187 ..     140     193 .. 0.75
   2 ?    8.6   0.1   0.00026       1.2     150     205 ..     306     361 ..     302     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
      Stevor 232 afepygi.aalvllilavvliiLYiwlyrR 260
                  f+ y++ aal +l+l+v  i+L + l   
  CDO71289.1 158 EFNVYAVpAALTVLLLTVETIFLIVALPET 187
                 477777757899999999999998887654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00026
      Stevor 150 trgicvcsvgsvlltliglaaakaaavaakvalsaealkklasslsilnlfsessl 205
                  rgi++c+vg ++lt++   +a++ +va++  + a+a+ +++s++ + +l   +sl
  CDO71289.1 306 RRGIMSCAVGLIFLTILPNLVATHRTVAIRLLQAAAACMAMTSATVVNSLTAYASL 361
                 58*****************9999999999666666666666666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3160.24
//
Query:       CDO71290.1  [L=823]
Description: hypothetical protein BN946_scf184908.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-75  254.2   0.0    1.1e-67  228.7   0.1    3.3  3  TruD             tRNA pseudouridine synthase D (TruD)
  ------ inclusion threshold ------
        1.6    9.3   9.0        8.8    7.0   5.6    2.8  2  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00046       4.1       2      32 ..     101     132 ..     100     159 .. 0.79
   2 !  228.7   0.1   1.3e-71   1.1e-67      43     320 ..     329     622 ..     317     674 .. 0.82
   3 !   16.2   0.0   4.1e-07    0.0037     328     415 ..     672     788 ..     625     789 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00046
        TruD   2 lgielyv.tdtegigGrlrespeDFiVeEiee 32 
                 +gi+ y+  d + i+G ++++  DF+V E+  
  CDO71290.1 101 VGISEYIgHDVPRIEGIIKQRFTDFLVFEVDL 132
                 677777636899*****************943 PP

  == domain 2  score: 228.7 bits;  conditional E-value: 1.3e-71
        TruD  43 eylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirk..vepeeleal.................eikdvelevvgrarrklrl 122
                 +y+ ++++k+n+dt+d++ +l+r+l+ s k++++aGtKDkr+vT+Q +s+r+   + e++ ++                   ++v++ ++   + +l+l
  CDO71290.1 329 PYIHFTLQKTNRDTQDALAHLSRTLHCSVKDLSVAGTKDKRGVTVQRVSLRRgnKTVEDVWKManglngrrtmeeiltqrGERGVRVADFNYRKASLEL 427
                 6799*********************************************9762355566666689999999999655544339**************** PP

        TruD 123 GdLaGNkFeirvrdv.aeeeeaakraeeileeleekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAvelyvgkpfeeesedtreareavaetgdl 220
                 G L+GN+F i++r+v     + ++++++ ++++++kg + Ny+G+QRFG+    th++G+a++kgd+++Av l++ +  + e++d+ +ar+a   +gdl
  CDO71290.1 428 GMLKGNAFVITLRNVrV---DSMDTLDRAMQTIKNKG-FINYYGMQRFGTASIPTHTIGLALLKGDWHRAVSLIL-RNRPGEHPDVVAARNAWLVEGDL 521
                 **************944...5578***********98.*********************************8766.56789999999************ PP

        TruD 221 eealeelpkslryErallkrLae...kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeerlpdtdrlqlvteknv 316
                 ++ale++p+++  Er +l+++++   ++++  +Al+++p+nL+ +++hAyqSy++N ++seR+++    d+pv+GD+v++++++  + + ++ ++e   
  CDO71290.1 522 DKALELMPRRVVAERCILESYKKmggDTRNAMGALSTIPRNLRLMYIHAYQSYVWNAIVSERIRMH-GADKPVAGDLVFDESSS-LKAETTEDIAEVAL 618
                 ***********************66666667778899***************************98.78*********999877.44444444444444 PP

        TruD 317 eevk 320
                 e+++
  CDO71290.1 619 EAAE 622
                 4333 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 4.1e-07
        TruD 328 afvtaplvGtetelaegevgeierevleeegleledFklpklpelsskGtrRaillrve..............................dlelsaeede 396
                 + v++pl+G +++ + g  ge  re l+++gl+++++  ++ ++    G++R+il  ++                                 ++++++ 
  CDO71290.1 672 FDVIMPLPGKDVDYPGGPLGERYREFLRRDGLDPDNWVRKQ-KDYTLGGSYRKILHLPKelswtvmrytdpdvplaqsdedkllglpppA--TDENGKF 767
                 45899********************************9665.7***********998887777777777777777777777777766432..2333333 PP

        TruD 397 ..ltleFsLpkGsYATvvlrE 415
                   l+++ +L    YAT+ lrE
  CDO71290.1 768 laLQINLQLGTAAYATMALRE 788
                 224444455555677777777 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.6   0.00098       8.8      13      40 ..     300     326 ..     290     346 .. 0.61
   2 ?    2.3   0.1     0.027   2.5e+02      28      54 ..     643     668 ..     629     669 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00098
  FoP_duplication  13 grggrrgrgrggrggrggrgrgrggrgg 40 
                      +rgg+ +rgrgg +g g+  +grg+rgg
       CDO71290.1 300 KRGGGATRGRGGGRG-GRSEGGRGERGG 326
                      445555555554333.222335555554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.027
  FoP_duplication  28 rggrgrgrggrgg.rkkkkpltkeeLDa 54 
                      +++ +r r+     + k k l +e+LD+
       CDO71290.1 643 GKSSKRSRKA--WeAPKVKVLAEEDLDK 668
                      2233333333..2469999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5546.48
//
Query:       CDO71291.1  [L=278]
Description: hypothetical protein BN946_scf184908.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-73  246.6   0.0    2.8e-73  246.2   0.0    1.1  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   0.0   1.5e-77   2.8e-73       1     218 [.      34     249 ..      34     259 .. 0.96

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 1.5e-77
                 SEEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHH CS
   OMPdecase   1 snLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGka 99 
                 snLc+++Dv+++ ++l+++d vgp+i+ +Kth+d++e+++f  ++++l +l  kh+f ifeDrKfaDIGntv++q+++g+++i++w++i+++h+v+G +
  CDO71291.1  34 SNLCVSVDVTKKADFLRIIDIVGPYICLVKTHVDIIEDFDFS-VIENLKDLSVKHDFQIFEDRKFADIGNTVALQYASGVYKIASWSHITNAHPVPGPS 131
                 79**************************************99.******************************************************** PP

                 HHHHHHHHHHHTTS.EEEEEESTSSGGHHHHHHHSHHHHHHHHHHHHHHHTTESEEECCCHTH....HHHHH.TTCSCEEEHHHTTEEEEECTTCCGGG CS
   OMPdecase 100 svkalaeaaekwgnrgllilaqmsskgnlmlqekgytqacveaarehkaedfvmGfvaqetln....ateed.addfihltpgigleqggdgkgqqynt 193
                 ++++l+ +    g rgll+l +ms+kg+l++++  yt+++v  ar +   dfv+Gf+aq+++     a+  +  +df++ltpg+g++++gd  gqqy+t
  CDO71291.1 132 VITGLLSVGLPLG-RGLLLLSEMSTKGSLATGS--YTEEAVRMARSNR--DFVVGFIAQRRMDnigvAEG-AsDEDFLILTPGVGMDVKGDSMGQQYRT 224
                 ************7.*******************..*************..************99986433.3489************************ PP

                 HHHHHHHTTCSEEEESHHHHTSSSH CS
   OMPdecase 194 pekligiagadiiivGRgIlkagdp 218
                 p +++ ++g+d+iivGRgI+++g+ 
  CDO71291.1 225 PREVVLESGCDVIIVGRGIYGKGNG 249
                 *********************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2168.85
//
Query:       CDO71292.1  [L=424]
Description: hypothetical protein BN946_scf184908.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-43  146.5   0.0    6.2e-43  145.9   0.0    1.3  1  eRF1_1           eRF1 domain 1
    2.3e-22   79.6   0.0    4.7e-22   78.6   0.0    1.6  1  eRF1_3           eRF1 domain 3
      6e-19   68.7   0.0    9.2e-19   68.1   0.0    1.3  1  eRF1_2           eRF1 domain 2
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.75    9.8   0.0    2.1  2  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   1.4e-46   6.2e-43       1     129 []       1     151 [.       1     151 [. 0.97

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 1.4e-46
                 HEEEEECTBTTSCCEEEEEE-SCHHHHHHHHHCHTTHEEEEEEEECHHH.......--CEEEEEEEEEEEEEEECTTS....................S CS
      eRF1_1   1 mkllkrdlekdgsgsvtLipeddedlwhlynliapgdsvrastvrkvqresstgsreservklkLtikvekvdfdkda....................g 79 
                 mkl+ + +ekdgsg+vt++pedded+whlynli+ gd+vras +r+vq+ s+tgs++s r++l Lt+ v++v + +++                    +
  CDO71292.1   1 MKLIGKRIEKDGSGHVTVVPEDDEDMWHLYNLIQVGDRVRASGMRRVQNVSATGSVDSYRIRLSLTLAVTRVAWAPSTapgaesgnaasgstggstanA 99 
                 9****************************************************************************778899999************* PP

                 EEEEEEEEEEGGGG--TTSEEEEEE-TTSEEEEEE..CEESHHHHHHHHHHC CS
      eRF1_1  80 vlrisGkvieenehvklgafhtldlelkrpftiik..eewdsfalerLkeal 129
                 ++ ++G+v+een hvklgafhtl +e +++++i+k   +wds+al r++e++
  CDO71292.1 100 TVEVTGRVAEENMHVKLGAFHTLAIEANKNVRIEKdaGGWDSVALSRVEESC 151
                 ***********************************6555***********97 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   1.1e-25   4.7e-22      11     112 ..     307     395 ..     295     396 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.1e-25
                 HHHHHHCTCSSEEESHHHHHHHHHTT-EEEEEEEHCHHTSSSH.HHHHS-HHH-HHHHHHHHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHHTTTEEEE CS
      eRF1_3  11 fleelakdtgkavYGveevlkalemgAvetLLvseelersrdt.lkekvketgeelelvelieelvenveesgakveiisseseeGeqlvkafgGiaai 108
                 f+++la+d+ +a+YG ++v  a+  gA+ tLL+s+el+rs+d  +++k             + ++ve+v++ g++v i+ss++e+G+ql ++++Giaai
  CDO71292.1 307 FFKMLATDEMRAWYGPDHVALAADRGAIGTLLISDELFRSSDAaQRKK-------------FVSIVEDVKQKGGEVLIFSSMHESGQQL-NQLTGIAAI 391
                 9****************************************9966666.............99**************************.********* PP

                 ESS- CS
      eRF1_3 109 LRyk 112
                 L ++
  CDO71292.1 392 LTFP 395
                 **98 PP

>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.1e-22   9.2e-19       2     130 ..     159     289 ..     158     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.1e-22
                 EEEEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHHH CS
      eRF1_2   2 vglivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdllda 100
                 v++iv  eg At++ll++++t vl+++ev +P+K  +  +sa+      e+ l +f+++++++  ++ +     +l++i++a+pg v+++ +d+++ +a
  CDO71292.1 159 VAAIVCGEGTATFCLLSEHMTVVLQRLEVPIPRKIST-TSSAH------EKGLARFYQSLYQSFLRH-VPYSSPTLRAIVIASPGWVRDAVFDYIMSEA 249
                 89*********************************86.66666......8*****************.988**************************** PP

                 HHHT........CCEEEEE-S-TSCHHHHHHHHC..CHHH CS
      eRF1_2 101 elkk........kviklvdvsyggesglnevlek..aaev 130
                 ++++         ++  v+v++ + ++l e+l+    a +
  CDO71292.1 250 NRTSnkpllaarPKFIKVHVNSPHVHSLVEALKSpeIATQ 289
                 *99999*****99999****************98665555 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00017      0.75      24      57 ..      10      44 ..      10      69 .. 0.92
   2 ?   -1.2   0.0      0.47   2.1e+03      50      61 ..      99     110 ..      96     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
                     EETTEEEEEEEET.HHHHHHHTTS-TTSEEEEEEE CS
  tRNA_anti-codon 24 rDgtgriqvvlfr.eeatklaenlkeGdvvrvtGr 57
                     +Dg+g ++vv  + e++  l++ +++Gd vr++G 
       CDO71292.1 10 KDGSGHVTVVPEDdEDMWHLYNLIQVGDRVRASGM 44
                     59***********9*******************95 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.47
                      SEEEEEEEEEEC CS
  tRNA_anti-codon  50 dvvrvtGrvkrr 61 
                        v+vtGrv + 
       CDO71292.1  99 ATVEVTGRVAEE 110
                      579999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2968.24
//
Query:       CDO71293.1  [L=225]
Description: hypothetical protein BN946_scf184908.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0023   17.9   0.1     0.0044   17.0   0.1    1.4  1  Thioredoxin     Thioredoxin
  ------ inclusion threshold ------
       0.13   12.7   0.0       0.22   11.9   0.0    1.3  1  Calc_CGRP_IAPP  Calcitonin / CGRP / IAPP family


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.9e-07    0.0044      15      93 ..      89     166 ..      77     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.9e-07
                  TTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-H CS
  Thioredoxin  15 akekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegare 93 
                   ++k  ++v F+      C  +  +l+++a ++  +  ++kv v++ + l++k++++ +P ++ f ng + ++++g +e
   CDO71293.1  89 TANKPRCVVHFFHHKFKRCEIMDKHLARIAPKYF-NTLFIKVFVENVPWLVEKLAIKVLPCVMTFLNGVSKDRIVGFEE 166
                  4468899***************************.99********************************9999999765 PP

>> Calc_CGRP_IAPP  Calcitonin / CGRP / IAPP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.22      29     104 ..      41     113 ..      34     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
  Calc_CGRP_IAPP  29 alellds.atlkeeesrlllarlvrdlvqlkaeeleqekeaeesssdaiqkrgCnlaTCvthrLahrLsrsgskvkd 104
                       e  ds a+++e+     l+r +++l+q++++++ q +e   + ++  ++   n   Cv+h   h+ +r + ++k+
      CDO71293.1  41 EIE-NDSsAAFRER-GVEQLKREMNQLQQMRNDGHGQYREV--TDEKEVIRLTANKPRCVVHFFHHKFKRCEIMDKH 113
                     444.5552555554.55567888899999999988888877..58999***********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1580.34
//
Query:       CDO71294.1  [L=534]
Description: hypothetical protein BN946_scf184908.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-70  234.3   2.2    2.6e-69  232.8   1.5    1.9  2  FAD_binding_7   FAD binding domain of DNA photolyase
    6.9e-27   94.5   0.4      5e-13   49.4   0.0    2.4  2  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.096   8.6e+02     144     170 ..     200     223 ..     189     245 .. 0.71
   2 !  232.8   1.5   2.9e-73   2.6e-69       1     164 [.     357     520 ..     357     531 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.096
                    HHHHH-GGGTTS-HHHHT-.GGGSGCHH CS
  FAD_binding_7 144 yirrwvpeLkklpakyihe.pwkapaee 170
                    + r w p L+k +++++ e p      +
     CDO71294.1 200 FLRVWAPVLEKASSHHLDEaP----LPK 223
                    999********9999888622....222 PP

  == domain 2  score: 232.8 bits;  conditional E-value: 2.9e-73
                    HHHHHHHHHHHHHHHHCSTTTT.TSSTTGCCTT------HH.HHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHCTTT-B-HHHHHHH CS
  FAD_binding_7   1 flreLlwrefyyallaaepela.eralkekfdripweeseeekleaWkeGrTGfPlvDAamrqLretGwmhnrlRmivasFltkdLlidWregeev 95 
                    +++eL+wr+fy++++a +p+++  r+++ek+ +++we++ + +l+aWk+GrTG+P+vDAamrq r+ Gwmhnr+Rmi a++l+kdL+idWr ge++
     CDO71294.1 357 WIQELAWRDFYTHIVALFPRVSmGRPFQEKYADVRWETNPD-HLQAWKDGRTGVPIVDAAMRQARTMGWMHNRARMIAAMYLVKDLMIDWRLGEKY 451
                    99*******************989************98877.7***************************************************** PP

                    HHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHHHT-GG CS
  FAD_binding_7  96 FeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpakyihepw 164
                    F+e+l+D+dlasn+g+wqw+a+tg+d ap+frifnp++q++k Dp geyir++vpeL+k+  ++ h+  
     CDO71294.1 452 FMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPGGEYIRHFVPELSKVRGSVNHKEA 520
                    *************************************************************99998754 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.9     5e-15   4.5e-11       1      58 [.      74     136 ..      74     137 .. 0.87
   2 !   49.4   0.0   5.6e-17     5e-13      85     157 ..     136     209 ..     135     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 5e-15
                     EEEEES.S---STT-HHHH....HHHCTTSEEEEEEEE-HH..HHTCGS-CHHHHHHHHHHHHHH CS
  DNA_photolyase   1 vlvWfr.rDlRlhDNpALa....aAaasgepvipvfvldpe..kahklrvgaarvdfllesLadL 58 
                     v++W+r +D+R++DN+ALa    +A+++g p++++fvl+p+   ah+   +a+r+df+l++L+ +
      CDO71294.1  74 VVYWMRmEDMRIRDNRALAlasaQAQRNGVPLLVLFVLSPQdyIAHDR--SARRIDFTLRNLRCI 136
                     79*****************66555599999***********8655666..************865 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 5.6e-17
                     HHCTECEEEEE---SHHHHHHHHHHHHHHHHC.TSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHHHHC CS
  DNA_photolyase  85 kelgasavvanreyepdererdeavkealrka.gievesfddhtlvepgevktkkgkpykvFtpfrkrwlkelk 157
                      +++as+v+ n eye+de +rd a+ e++++  +++++ ++d+++v+pg+v+tk+g+ y v++pf + w   l+
      CDO71294.1 136 IKWNASHVFGNIEYEVDELRRDIAMCEIAQEYgKLACIFVHDKCIVPPGDVRTKEGRGYTVYSPFLRVWAPVLE 209
                     58****************************86489*********************************988555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3708.49
//
Query:       CDO71295.1  [L=661]
Description: hypothetical protein BN946_scf184908.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-83  277.8   5.4    7.1e-83  277.8   5.4    1.7  2  DUF5127   Domain of unknown function (DUF5127)
    1.3e-73  246.4   0.1    4.7e-73  244.5   0.0    2.0  2  DUF4965   Domain of unknown function (DUF4965)
    1.5e-66  224.0   2.0    1.5e-66  224.0   2.0    2.0  2  DUF1793   Domain of unknown function (DUF1793)


Domain annotation for each model (and alignments):
>> DUF5127  Domain of unknown function (DUF5127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.8   5.4   1.2e-86   7.1e-83       1     227 []      49     279 ..      49     279 .. 0.97
   2 ?   -1.8   0.3      0.38   2.2e+03     114     181 ..     539     603 ..     502     621 .. 0.69

  Alignments for each domain:
  == domain 1  score: 277.8 bits;  conditional E-value: 1.2e-86
     DUF5127   1 tqtiftftaggkveltvtFlSPvlpddldrqSlpfsYltvevkstdgkshsVqvYsdisaewasgdesqevewstttgglayhkvgrqnqevlsekndr 99 
                 tq+if++tag+ ++ltvtFlSPv+p+dl+ qSlp+sY +v+++s+dgk+hsVq+Y+disaew++gd+s +++w+tttg++ +h+++  +q++++e  d+
  CDO71295.1  49 TQSIFVLTAGP-IDLTVTFLSPVEPSDLVNQSLPLSYYAVSAASNDGKAHSVQLYTDISAEWVTGDNSLTANWTTTTGSVLTHQIQLVSQTQFGEVGDH 146
                 9*********6.***************************************************************779********************* PP

     DUF5127 100 adwGyaylatkakss.ltyqsgedtevrkqFvkngklantkdtnfraisddwpvfalahdlgsvssesksvvfaiGyvrdpaiqylg.....qnlrpyW 192
                 ++ G+ay++t  +++  t+q+g+dt vr+qF++ngkl+nt+dt fra+sd+wpvfa+ahdlgsv++ +++v+f++G+ rdpaiqy+      qn++ ++
  CDO71295.1 147 IQQGSAYHSTL-NTAgATWQTGQDTIVRAQFINNGKLTNTQDTAFRAVSDRWPVFAFAHDLGSVNGATAPVIFSVGHIRDPAIQYIVanngrQNRSLFF 244
                 ***********.7778************************************************8877******************8888999999999 PP

     DUF5127 193 rskyssiedalsaflkdyaaalkrsealDkkirad 227
                 ++++s++++a+s+fl+dya+al+r++a+D+k++ad
  CDO71295.1 245 WTRFSTVANAISTFLNDYANALARANAFDSKVNAD 279
                 ********************************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.38
     DUF5127 114 s.ltyqsgedtevrkqFvkngklantkdtnfraisddwpvfalahdlgsvssesksvvfaiGyvrdpai 181
                   l+y+  +d+ ++++   +     t +tn+   s+++ +f++  d   + ++s+  +++ G+v   ++
  CDO71295.1 539 WgLSYNLYADKLLKTNLFPTSVY--TIQTNW--YSSHANAFGVPLDTRHTYTKSDWEIWTAGLVTSTTV 603
                 35667777777777777766666..667777..778888888888888885556778888888876665 PP

>> DUF4965  Domain of unknown function (DUF4965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1   6.4e+03      79      93 ..     194     208 ..     177     212 .. 0.80
   2 !  244.5   0.0   7.9e-77   4.7e-73       5     174 .]     286     479 ..     283     479 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
     DUF4965  79 sgkypkkfaahDlGt 93 
                 s+++p    ahDlG+
  CDO71295.1 194 SDRWPVFAFAHDLGS 208
                 568888777899997 PP

  == domain 2  score: 244.5 bits;  conditional E-value: 7.9e-77
     DUF4965   5 kYadllalsvRqafaalelv......skdetsevllflKeissngnvntvDviypalPlflylnpellkllLeplleyqesgkypkkfaahDlGtsYPn 97 
                 +Ya+++als+Rq f+a+e++      +  +ts+vl f+Keiss+gnvntvDvi+pa+Plfly+np++ k+lL pl+eyq++g+yp+k+++hD+G+sYP+
  CDO71295.1 286 DYASIVALSIRQGFGATEITvsrtnsGGFNTSDVLTFMKEISSDGNVNTVDVIFPAWPLFLYTNPTIGKQLLLPLFEYQATGQYPNKWSVHDMGASYPK 384
                 8********************999866999********************************************************************* PP

     DUF4965  98 atgqndg..................edeqmpveesGnmlimalayaqasgdasllekyydllkqWadYLvengldpanqlstddfagalanqtnL 174
                 a g+ndg                  +de+mpveesGnmlim+l+y+q+s+d sl+++y +ll+qW+++L++++l+panq+stddfag+lanqtnL
  CDO71295.1 385 AIGHNDGeqffnlivllecsrvvegNDEPMPVEESGNMLIMTLSYTQKSNDLSLIRNYFNLLDQWTQFLITDSLIPANQISTDDFAGSLANQTNL 479
                 *******999999999999999999999******************************************************************8 PP

>> DUF1793  Domain of unknown function (DUF1793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.3   1.4e+04      53      78 ..     255     280 ..     247     288 .. 0.73
   2 !  224.0   2.0   2.4e-70   1.5e-66       1     166 []     485     652 ..     485     652 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
     DUF1793  53 wsllYnlyaDkllglnlvpqsvyemq 78 
                  s+  n ya++l   n ++++v    
  CDO71295.1 255 ISTFLNDYANALARANAFDSKVNADA 280
                 56667888888888888888886655 PP

  == domain 2  score: 224.0 bits;  conditional E-value: 2.4e-70
     DUF1793   1 iGikAmseiaellgeeedakkysaiaeeyikkweelai..dgthlklaYdkedswsllYnlyaDkllglnlvpqsvyemqsafYktvaqkyGlplDsrh 97 
                 +GikAm+eia+l+g+++ +++ys+ia++y+++w+++a+  dgthl+l+Y++++sw+l YnlyaDkll++nl+p svy+ q+++Y+++a+++G+plD+rh
  CDO71295.1 485 VGIKAMAEIASLVGDTARSSNYSSIAASYVTQWQKFATasDGTHLTLSYGNSSSWGLSYNLYADKLLKTNLFPTSVYTIQTNWYSSHANAFGVPLDTRH 583
                 8*************************************87779******************************************************** PP

     DUF1793  98 tytksdWelfaaavask.ktreelissvakwvnetktdrpftdlYdtegtgglpgfrarpvvGGhFalLa 166
                 tytksdWe+++a ++++ ++r+ l+ssv+k+++++k+++p++d+Y+t  +g+++gfrarpvvGGh al+a
  CDO71295.1 584 TYTKSDWEIWTAGLVTStTVRDLLVSSVRKYAADGKSSQPLGDWYET-LDGSVEGFRARPVVGGHLALVA 652
                 *************98888****************************9.8******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4862.03
//
Query:       CDO71296.1  [L=434]
Description: hypothetical protein BN946_scf184908.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-66  222.3   0.3    3.2e-66  222.3   0.3    1.7  2  DUF4965     Domain of unknown function (DUF4965)
    1.2e-47  162.4   4.3    4.2e-47  160.7   4.3    1.9  1  DUF1793     Domain of unknown function (DUF1793)
  ------ inclusion threshold ------
      0.011   16.0   3.7      0.029   14.7   3.7    1.7  1  Invasin_D3  Invasin, domain 3
       0.57    9.6   5.4        4.5    6.7   1.3    2.3  2  DUF4851     Domain of unknown function (DUF4851)


Domain annotation for each model (and alignments):
>> DUF4965  Domain of unknown function (DUF4965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3   0.3   7.1e-70   3.2e-66       3     174 .]       8     191 ..       6     191 .. 0.96
   2 ?   -2.5   0.3      0.76   3.4e+03     114     145 ..     215     246 ..     213     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: 222.3 bits;  conditional E-value: 7.1e-70
     DUF4965   3 gekYadllalsvRqafaalelv......skdetsevllflKeissngnvntvDviypalPlflylnpellkllLeplleyqesgkypkkfaahDlGtsY 95 
                 +++Ya+l+ ls+Rq+f+a+el+      ++ +ts++l+f+Keiss+gnvnt D+i+pa+Pl+ly++p + k+lL plleyq++g+yp+++aahD+Gt+Y
  CDO71296.1   8 SDDYASLMPLSIRQTFGAMELTvsrlgsDSFNTSNMLMFMKEISSDGNVNTADIIFPAWPLLLYISPGVGKQLLLPLLEYQATGQYPNSWAAHDIGTKY 106
                 89**********************9987699******************************************************************** PP

     DUF4965  96 Pnatgqndg......edeqmpveesGnmlimalayaqasgdasllekyydllkqWadYLvengldpanqlstddfagalanqtnL 174
                 Pnatg+ndg      +++     esGnmlim+l+y+q+++d+sl+++yy ll++W +YLven+l+p+ qls+dd ag+lanqtnL
  CDO71296.1 107 PNATGHNDGtqisstRANILTSAESGNMLIMTLSYTQRTNDNSLIKNYYGLLDKWGRYLVENALTPTLQLSSDDPAGPLANQTNL 191
                 *********77776555567779*************************************************************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.76
     DUF4965 114 sGnmlimalayaqasgdasllekyydllkqWa 145
                 s+n  ++alay+q  ++ ++ ++  +l+  + 
  CDO71296.1 215 SANYSTIALAYVQDWENFAMSSDSTHLMLAYG 246
                 77888888888888777777777666666554 PP

>> DUF1793  Domain of unknown function (DUF1793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   4.3   9.4e-51   4.2e-47       1     166 []     197     352 ..     197     352 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.7 bits;  conditional E-value: 9.4e-51
     DUF1793   1 iGikAmseiaellgeeedakkysaiaeeyikkweelai..dgthlklaYdkedswsllYnlyaDkllglnlvpqsvyemqsafYktvaqkyGlplDsrh 97 
                 iGikAmseia+++g+++ +++ys+ia  y+++we++a+  d+thl laY++++sw+++YnlyaDkll+            +++Y+++a+ +G plD+r 
  CDO71296.1 197 IGIKAMSEIANIMGDSQRSANYSTIALAYVQDWENFAMssDSTHLMLAYGNSSSWGITYNLYADKLLE------------TKWYSSHANVFGFPLDTRV 283
                 8*************************************76669************************9............99***************** PP

     DUF1793  98 tytksdWelfaaavask.ktreelissvakwvnetktdrpftdlYdtegtgglpgfrarpvvGGhFalLa 166
                 +y+ksdW++f+aa++++ ++r+++is v k+++++k+ +pf+dlY    +g  ++  arpvvG+h alLa
  CDO71296.1 284 DYAKSDWQMFTAATTTDdSVRDTFISLVQKYAADGKNAKPFSDLYGS-LDGISQDPEARPVVGAHLALLA 352
                 ***************999****************************8.7899889*************97 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.7   6.4e-06     0.029       3      75 ..     356     433 ..     354     434 .] 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.4e-06
  Invasin_D3   3 akStftaspasivAdGkststltvtlkDangnp...vsgltvtfsttsag....tlsavtdngdGtytatLta.ttagtat 75 
                 ++S f++sp++ + dG +tst t  +  a+g+p   v+  + t stt  g    +ls + d  +G  +a++ a +++g++t
  CDO71296.1 356 NSSIFSISPSESMSDGGATSTGTTSVSGASGQPpvtVTSTATTPSTT--GtassALSRW-DRTYGLSKAVVWAcSAIGALT 433
                 56889****************************85433333344444..4222344444.999999999999988888876 PP

>> DUF4851  Domain of unknown function (DUF4851)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1    0.0055        25      85     124 ..     280     319 ..     264     326 .. 0.84
   2 ?    6.7   1.3     0.001       4.5       4      48 ..     376     425 ..     374     430 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0055
     DUF4851  85 evrkateqlggatfeaaTfildasrDpfailalvlgdapk 124
                 + r+++ + + + f+aaT + d+ rD f  l++++ ++ k
  CDO71296.1 280 DTRVDYAKSDWQMFTAATTTDDSVRDTFISLVQKYAADGK 319
                 678999999999****************888877766654 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.001
     DUF4851   4 sGetlvSsa..rPalvvtvpaltalgaGvvdia...ldtelgtksarvyi 48 
                 +G t vS+a  +P+++vt  a t+ ++G ++ a   +d  +g+ +a+v+ 
  CDO71296.1 376 TGTTSVSGAsgQPPVTVTSTATTPSTTGTASSAlsrWDRTYGLSKAVVWA 425
                 688889864449******99999999999886522278999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 2333.12
//
Query:       CDO71297.1  [L=400]
Description: hypothetical protein BN946_scf184908.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-20   73.3   8.0    2.2e-15   56.9   3.1    2.2  2  Wtap         WTAP/Mum2p family
  ------ inclusion threshold ------
      0.023   15.3  21.8      0.064   13.9  21.8    1.7  1  PRP38_assoc  Pre-mRNA-splicing factor 38-associated hydrophil
      0.055   13.3   0.7        0.1   12.4   0.0    1.8  2  SKA1         Spindle and kinetochore-associated protein 1
      0.084   12.5   0.0       0.15   11.7   0.0    1.3  1  MOZART2      Mitotic-spindle organizing gamma-tubulin ring as
        0.2   11.5   3.0        5.4    7.0   0.6    2.6  2  PKcGMP_CC    Coiled-coil N-terminus of cGMP-dependent protein
       0.26   11.3   2.3       0.44   10.5   2.3    1.3  1  DUF3915      Protein of unknown function (DUF3915)
       0.39   10.7   7.3        3.3    7.8   0.1    2.5  2  TMF_DNA_bd   TATA element modulatory factor 1 DNA binding
       0.67   10.5   4.2        2.1    8.9   4.2    1.7  1  APG6_N       Apg6 coiled-coil region
        2.2    8.5   7.8       0.13   12.5   2.2    1.7  2  FliJ         Flagellar FliJ protein


Domain annotation for each model (and alignments):
>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   4.9e-07   0.00098       3      59 ..       5      63 ..       3      67 .. 0.90
   2 !   56.9   3.1   1.1e-18   2.2e-15      81     155 ..      70     144 ..      67     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.9e-07
        Wtap  3 srrealllarlsakeqelqelksslqelkqslqpps.ssqlrqvllDPA.vnlvfsrlr 59
                s re +l + l++++++++el+++++ l+q l +++  s+++ ++++PA ++l++  l 
  CDO71297.1  5 SPRELELETLLRQRDAQVAELTDEVTYLRQFLAKQPpPSTTEPTTIPPAlMSLLLPLLS 63
                67999**************************99844488**********9999998886 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 1.1e-18
        Wtap  81 ftpdsqtGkrLmakcrvLeqENeELgkvleegrvakLeselalqkkfveelkkaleeleelleeleeevevlqst 155
                 +t  s+  ++L+++ + L++EN+EL++ l++g++ +L++++++++++v++l+ al+e+++++++l++e+e++q+ 
  CDO71297.1  70 TTGSSTATTALVQRAKILQEENDELYELLKTGETGRLKEDVRALRRVVQKLEGALRESHQVIASLSAELEKSQDA 144
                 6889999****************************************************************9986 PP

>> PRP38_assoc  Pre-mRNA-splicing factor 38-associated hydrophilic C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  21.8   3.2e-05     0.064      33      98 ..     220     285 ..     212     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-05
  PRP38_assoc  33 lsrkrrsrsrrrsstrarsrsrersrerdrrsrst.rdrdrardRdrrrskeerrrsrdrsrsrdrd 98 
                  +++++r  sr ++ + +r++  +++ e d+++rs+ r++ r+rdR+   + +er+++rdr+r+r+ d
   CDO71297.1 220 ANSTPRGVSRDSRASVDRKPADTVKMEVDDDMRSRpRSPVRERDRPPHHD-KERDKDRDRERDRQSD 285
                  55666777888888889999999999*******98999999999987644.4677777777776655 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-05       0.1      17      82 ..      95     159 ..      80     202 .. 0.78
   2 ?   -2.6   0.2         2   4.1e+03      93      99 ..     263     269 ..     220     298 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
                 .......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXX CS
        SKA1  17 dpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlp 82 
                 ++ l +     ++++v+al++ ++kl+ +l+e  ++i +l +e+e+s++      h ++  p+h p
  CDO71297.1  95 YELLKTGETGRLKEDVRALRRVVQKLEGALRESHQVIASLSAELEKSQDALL-QAHGRQPHPPHQP 159
                 5555566677899*********************************995433.4455555555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
                 XXXXXXX CS
        SKA1  93 skssspe 99 
                  +    +
  CDO71297.1 263 DRPPHHD 269
                 1111111 PP

>> MOZART2  Mitotic-spindle organizing gamma-tubulin ring associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.6e-05      0.15       5      38 ..      66      99 ..      63     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.6e-05
     MOZART2  5 tspslvvsstvqkyavkkkkvLsaeeaeLyeLtq 38
                +sp+ + sst     v++ k+L+ e+ eLyeL +
  CDO71297.1 66 PSPATTGSSTATTALVQRAKILQEENDELYELLK 99
                689999999999999****************976 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.6    0.0027       5.4      12      27 ..      10      25 ..       7      33 .. 0.94
   2 ?    4.3   0.1     0.019        38      13      35 .]     120     142 ..     117     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0027
   PKcGMP_CC 12 ELEkrlaekdeEIqEL 27
                ELE  l+++d+ ++EL
  CDO71297.1 10 ELETLLRQRDAQVAEL 25
                8999***********9 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.019
   PKcGMP_CC  13 LEkrlaekdeEIqELrskLDKfQ 35 
                 LE +l+e + +I+ L + L K Q
  CDO71297.1 120 LEGALRESHQVIASLSAELEKSQ 142
                 999****************9977 PP

>> DUF3915  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3   0.00022      0.44      10      37 ..     262     289 ..     246     328 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
     DUF3915  10 dfrechrghccdrdrerereredereke 37 
                   r  h+ +  d+dr+rer+r+ +r k+
  CDO71297.1 262 RDRPPHHDKERDKDRDRERDRQSDRAKN 289
                 3344455444444444444444444443 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0017       3.3       2      25 ..      10      33 ..       9      39 .. 0.88
   2 ?    4.6   3.0     0.016        32       7      63 ..      87     145 ..      82     151 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0017
  TMF_DNA_bd  2 slekklkeKDeqIaqLmeEGekLs 25
                +le++l+++D+q+a+L  E + L+
  CDO71297.1 10 ELETLLRQRDAQVAELTDEVTYLR 33
                6899***************88765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.016
  TMF_DNA_bd   7 lkeKDeqIaqLmeEGe..kLskkelklnntikkLrkknkelekeikelkkkleklekel 63 
                 l e ++++ +L++ Ge  +L+   ++l+  + kL   ++e+ + i++l+ +lek++  l
  CDO71297.1  87 LQEENDELYELLKTGEtgRLKEDVRALRRVVQKLEGALRESHQVIASLSAELEKSQDAL 145
                 55666666677776663356777778888899999999999999999998888887655 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.2    0.0011       2.1       8     119 ..      12     145 ..      11     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
      APG6_N   8 dlLleeldkqleqaekerdaYeeflkklkkekkeeek........................qdeeleeleeeleklekeeeelleeLkelekereelea 82 
                 ++Ll + d q++++++e   +++fl+k    +++e +                        + + + +l ++ + l++e +el e Lk    e  +l++
  CDO71297.1  12 ETLLRQRDAQVAELTDEVTYLRQFLAKQPPPSTTEPTtippalmslllpllsehpspattgSSTATTALVQRAKILQEENDELYELLKTG--ETGRLKE 108
                 689999999999999999999999999887766654489999999999999999999988744444444444444444444444444443..3445677 PP

      APG6_N  83 elaaleeelealeeeeerfwreynelqlelleleeel 119
                 +++al++  ++le   ++  +   +l+ el++ ++ l
  CDO71297.1 109 DVRALRRVVQKLEGALRESHQVIASLSAELEKSQDAL 145
                 7777777777777777777777777777777777655 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3       3.2   6.5e+03      14      77 ..      15      31 ..      10      39 .. 0.41
   2 ?   12.5   2.2   6.4e-05      0.13      24      87 ..      86     150 ..      74     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.2
        FliJ 14 lqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvek 77
                l+q  ++++el+++                                                  
  CDO71297.1 15 LRQRDAQVAELTDEV-----------------------------------------------TY 31
                333344444444433...............................................33 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.4e-05
        FliJ  24 leqyrqeyqkqlsgea.qglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearq 87 
                 + q+ ++   +l +++ +g   ++ r++++  ++l+ a+ + +q++a + +++ek+++++++a+ 
  CDO71297.1  86 ILQEENDELYELLKTGeTGRLKEDVRALRRVVQKLEGALRESHQVIASLSAELEKSQDALLQAHG 150
                 444444444555555546999999**************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.37s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 2083.45
//
Query:       CDO71298.1  [L=121]
Description: hypothetical protein BN946_scf184908.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.55
# Mc/sec: 665.74
//
Query:       CDO71299.1  [L=298]
Description: hypothetical protein BN946_scf184908.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0091   15.8   0.0      0.013   15.2   0.0    1.1  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.5e-07     0.013       3      81 ..     195     273 ..     194     283 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.5e-07
                     EEEEEGGGGGSSGC....SHTTTESEEEEEEEEEEETTTEEEESS.TTHHHHHHHHHHHH.HHTSTT-EEEEEEEETTTTTHHHH CS
                     xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   3 vgYysswesygnny....lpsaklthiiyaFakidgengkvvvsd.wedlgnfeqlkklk.kkknpgvkvllsiGGwtdssgfsl 81 
                     ++Yy +w  ++  +    ++   ++ + +aFa  d  + +++ +d + d      l++l+ ++++ g+ v ls+GGwt+ss+++ 
      CDO71299.1 195 MAYYPDWVGKT--FppekVDFGRFDWVDFAFAVPDA-QANLT-WDgSDDA--PDLLRRLVaRAHQAGKNVKLSVGGWTGSSPVEA 273
                     799**9*8664..333456699999*******8877.43444.4434443..34688888888999*************987664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2045.08
//
Query:       CDO71300.1  [L=276]
Description: hypothetical protein BN946_scf184908.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.39s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 1409.88
//
Query:       CDO71301.1  [L=382]
Description: hypothetical protein BN946_scf184908.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0054   16.9   0.7      0.062   13.5   0.4    2.4  2  Myb_DNA-bind_2  Rap1 Myb domain
  ------ inclusion threshold ------
      0.055   13.7   3.8       0.06   13.6   1.8    2.0  2  PBP_N           Penicillin-binding protein N-terminus


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_2  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4     7e-06     0.062       7      50 ..      18      60 ..      14      66 .. 0.85
   2 ?    0.6   0.0     0.071   6.4e+02       3      30 ..     153     180 ..     151     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7e-06
  Myb_DNA-bind_2  7 eeeDaailkyvkekerspasvkGnkiwkelekkhltrHsWQslk 50
                    +++    ++y++ + r++  ++ ++++kele++ + rHs  +++
      CDO71301.1 18 DADKIFFIHYLQWRIRDHPAIHKTELYKELEAQMP-RHSADAWQ 60
                    55666789***************************.**977775 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.071
  Myb_DNA-bind_2   3 lpyteeeDaailkyvkekerspasvkGn 30 
                      p tee+ +a+  y+ e++      +G 
      CDO71301.1 153 CPVTEEDLQAMAAYMIENSETWHGSRGD 180
                     57799999*******9999876666665 PP

>> PBP_N  Penicillin-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.44     4e+03     105     130 ..      56      81 ..      50     103 .. 0.78
   2 ?   13.6   1.8   6.7e-06      0.06      22      75 ..     312     363 ..     300     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.44
       PBP_N 105 ayvwfkylkdtpalpsrealfavnra 130
                 a  w ++  + p lp r  +   nra
  CDO71301.1  56 ADAWQRHWDNNPHLPDRIYIEGRNRA 81 
                 55688888888888888777777776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.7e-06
       PBP_N  22 kpgpasesdsvsqdpwapqgpdpfrlssdaatpepprepepeepfradlkhaaa 75 
                 k  pa++s+ v+      q+pdp  +s+  a p  pr+  peep  + l  aa 
  CDO71301.1 312 KAKPAASSEPVQ-KVEQVQTPDPNDISTARAGPTIPRKRGPEEPVDT-LGFAAP 363
                 556677777775.77789**************************853.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2599.67
//
Query:       CDO71302.1  [L=995]
Description: hypothetical protein BN946_scf184908.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-113  377.7   0.0    1.5e-72  243.9   0.0    2.1  2  ThiF             ThiF family
    4.6e-93  311.8   0.2      7e-93  311.2   0.2    1.3  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
    2.7e-37  126.8   0.8    5.9e-37  125.7   0.8    1.6  1  E1_FCCH          Ubiquitin-activating enzyme E1 FCCH domain
    3.2e-28   97.7   3.3    4.1e-28   97.4   1.2    2.4  2  E1_4HB           Ubiquitin-activating enzyme E1 four-helix bu
    1.7e-18   67.1   0.6    5.5e-11   43.0   0.2    2.7  2  E1_UFD           Ubiquitin fold domain
  ------ inclusion threshold ------
        0.2   11.6   0.1        3.1    7.8   0.0    2.4  2  End_beta_barrel  Beta barrel domain of bacteriophage endosial


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   8.6e-42   2.6e-38       1     234 [.      22     400 ..      22     407 .. 0.94
   2 !  243.9   0.0     5e-76   1.5e-72       1     241 [.     411     907 ..     411     912 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 8.6e-42
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritd 99 
                 ysrql++lg++ ++++++s +l+vG+ glG e++kn +l+Gv+++t+ D + +++ +l+ qf  reed+Gk +ae+   +l+e+n +v v+ + ++ ++
  CDO71302.1  22 YSRQLYVLGHEAMKRMAASNILIVGMKGLGVEIAKNVVLAGVKSVTIYDPEPVQVADLSSQFFLREEDVGKLRAEATLPRLAELNAYVPVRNLGGQAGQ 120
                 89***********************************************************************************************99 PP

                 CCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-T.........GGS.EECCCCEEHHH......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxx......... RF
        ThiF 100 etvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldp.........sstedptekkvplct......... 180
                 e  + ++++++++Vv++  +++ ++ +n+  +++g+ +i+a+t g+ g  +  +    + + C dp         + + d++++ v +c          
  CDO71302.1 121 EI-TVDMIKGFQVVVLCGVSLKKQLEINDWTHENGVHFISADTRGLFGTSFNDF---GPKFTCVDPtgeqplsgmIVSIDKDKEGVVTCLdetrhglqd 215
                 85.67*******************************************777665...78889998755566666666666667777777799999**** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CDO71302.1 216 gdfvtfsevqgmtelngceprkvtvkgpytfsigdtsnfseyksggvftqvkmpkiiqfkslreslkepeffitdfskfdrpatlhagfqalfqfeeky 314
                 *************************************************************************************************** PP

                 ....................................HHHCTE-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECC CS
                 ....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ....................................siagnipaiatttavvaglaalellkllsgkeklenslltqvdllesrfenvel 234
                                                     ++ g   a+a+++av++g +a+e+lk++s+k + +++ l ++d les  ++++ 
  CDO71302.1 315 qrlprprnaedaaefvklakainsdadekiltelayQATG---ALAPMNAVIGGFVAQEVLKACSAKFHPMVQHL-YFDSLESLPDELPT 400
                 ****************************999999999999...*************************9999999.89998887777665 PP

  == domain 2  score: 243.9 bits;  conditional E-value: 5e-76
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT.....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTS..EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvg.....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdv..evea 92 
                 y+ q+a++g+++q+k+++ + +lvG G++G+e+lkn+ ++G+g     k+ ++D D+ie+sNlnRqflfr +d Gk K+evaaea++++npd+  ++ea
  CDO71302.1 411 YDGQIAVFGKKFQDKIANFREFLVGSGAIGCEMLKNWSMMGLGsgpngKIYVTDLDTIEKSNLNRQFLFRAKDLGKFKSEVAAEAVASMNPDLkgKIEA 509
                 789****************************************9*************************************************999*** PP

                 EES-CCG.CC..S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH........ CS
                 xxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
        ThiF  93 vteritd.et..vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct........ 180
                  +e++++ ++  +  +++ s+D V +alDn++ar +++++cv++ +pl+e+gtlg++g+++vi+p+ t+ y     ss++dp+ek+ p+ct        
  CDO71302.1 510 RQEPVGPdTEniYDADFFASIDGVTNALDNVKARQYMDQRCVFYLKPLLESGTLGTKGNTQVIVPHLTESY-----SSSQDPPEKETPVCTvknfpnqi 603
                 *****9954488788************************************************97555555.....5668******************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CDO71302.1 604 qhtiewarqefdnlfvkppqvvnsylsepnflennlkysgqqkeqveqivsylvtnkpltfeecivwarlqfeekynhairqllyslpkdavtstgqpf 702
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CDO71302.1 703 wsgpkrapdpltfdsnnpthlhyiiaaanlhaynyglrgetdpalfkkiadevvvpeftpksgvkvqindndptpqnesnadtdlsdlmkqlpppssvv 801
                 *************************************************************************************************** PP

                 ............................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECC CS
                 ............................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ............................................siagn.ipaiatttavvaglaalellkllsgkeklenslltqvdllesrfenvel 234
                                                             +iag+ ipaiattta+v+gl++lel+k+++gk+kle++++ +v+l++++f + e+
  CDO71302.1 802 gyrlnpvefekdddtnhhidfitaasnlralnysitpadrhttkQIAGKiIPAIATTTALVTGLVCLELYKIIDGKKKLEAYKNGFVNLALPFFGFSEP 900
                 *************************************************************************************************** PP

                 EEEEEEC CS
                 xxxxxxx RF
        ThiF 235 erakksk 241
                  ++kk+k
  CDO71302.1 901 IAPKKNK 907
                 9999875 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2   0.2   2.4e-96     7e-93       1     252 []     600     845 ..     600     845 .. 0.96

  Alignments for each domain:
  == domain 1  score: 311.2 bits;  conditional E-value: 2.4e-96
  UBA_e1_thiolCys   1 PneieHtieWArdkFeglFekkpeevnkflkdkekfleelekekeeekletlekvlkllvkerpktfedCvkwArekfeklFnnkikqLlynfP 94 
                      Pn+i+HtieWAr++F++lF+k+p+ vn++l++  +fle+  k ++++k e++e++ ++lv+++p tfe+C+ wAr++fe+++n++i+qLly+ P
       CDO71302.1 600 PNQIQHTIEWARQEFDNLFVKPPQVVNSYLSE-PNFLENNLKYSGQQK-EQVEQIVSYLVTNKPLTFEECIVWARLQFEEKYNHAIRQLLYSLP 691
                      9*****************************76.699999999999988.99******************************************* PP

  UBA_e1_thiolCys  95 kdsktsdGapFWsgpKraPkplefdlenelhleFvvaaanLraqvygikgerdeeaiakllskvkvpefkpkekvkiavsdeeakeeeeeeede 188
                      kd++ts+G+pFWsgpKraP+pl+fd++n++hl++++aaanL+a +yg++ge+d + ++k++++v vpef+pk++vk + +d++ + ++e+++ +
       CDO71302.1 692 KDAVTSTGQPFWSGPKRAPDPLTFDSNNPTHLHYIIAAANLHAYNYGLRGETDPALFKKIADEVVVPEFTPKSGVKVQINDNDPTPQNESNA-D 784
                      ******************************************************************************99999988876644.7 PP

  UBA_e1_thiolCys 189 eeleelaeeleklakkessla.lklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252
                      ++l++l+++l+     +ss+  ++l+p+eFeKDddtn+hidfitaasNlRA nY+I++adr+++K
       CDO71302.1 785 TDLSDLMKQLPP----PSSVVgYRLNPVEFEKDDDTNHHIDFITAASNLRALNYSITPADRHTTK 845
                      89**********....666666*****************************************99 PP

>> E1_FCCH  Ubiquitin-activating enzyme E1 FCCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.8     2e-40   5.9e-37       1      71 []     198     268 ..     198     268 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 2e-40
                 .TTSEEEESTT--S---TT-EEEEES-BT-CCGGGS--EE-EE-SSSEEE----TTS-SEEES-EEEEE-- CS
     E1_FCCH   1 dnpgvVtvleesrhgledgDyVtFseveGmtelNgkeprkikvlgpytFeIgdtsnfspYkrgGivtqvKq 71 
                 d++gvVt+l+e+rhgl+dgD+VtFsev+GmtelNg+eprk++v+gpytF+Igdtsnfs+Yk+gG++tqvK+
  CDO71302.1 198 DKEGVVTCLDETRHGLQDGDFVTFSEVQGMTELNGCEPRKVTVKGPYTFSIGDTSNFSEYKSGGVFTQVKM 268
                 689*******************************************************************8 PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   1.2   1.4e-31   4.1e-28       1      70 []     269     337 ..     269     337 .. 0.99
   2 ?   -2.3   0.0       1.8   5.3e+03      28      43 ..     718     735 ..     710     737 .. 0.70

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 1.4e-31
                 -EEE----HHHHTTS-.-BE-S-GGGTTCHHHHHHHHHHHHHHHHCTT----TT-HHHHHHHHHHHHHHH CS
      E1_4HB   1 PktlsFksleesleePeeflisDfakfdrpeqlHlafqALhaFeeehgrlPrplneedaekvvalakeln 70 
                 Pk+++Fksl+esl+eP ef+i+Df+kfdrp++lH++fqAL +Fee+++rlPrp+n+eda+++v+lak++n
  CDO71302.1 269 PKIIQFKSLRESLKEP-EFFITDFSKFDRPATLHAGFQALFQFEEKYQRLPRPRNAEDAAEFVKLAKAIN 337
                 9***************.***************************************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                 TCHHHHHHHHHH..HHHH CS
      E1_4HB  28 drpeqlHlafqA..LhaF 43 
                 ++p  lH+++ A  Lha+
  CDO71302.1 718 NNPTHLHYIIAAanLHAY 735
                 456699999988556665 PP

>> E1_UFD  Ubiquitin fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.9e-08   0.00024       1      29 [.     916     944 ..     916     945 .. 0.98
   2 !   43.0   0.2   1.8e-14   5.5e-11      48      93 .]     946     991 ..     945     991 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.9e-08
      E1_UFD   1 WDrlevegeitlkelldyfkekkklevsm 29 
                 WDr+e+ ++ tlk+++dyf+ ++kl+v+m
  CDO71302.1 916 WDRFEFRNDPTLKDIVDYFQREHKLDVTM 944
                 ***************************98 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 1.8e-14
      E1_UFD  48 kerlklklselveevtkkkipphqkyldlevsvedeegedvevPlv 93 
                 +erl++k+s+lve+v+kk++p+h+k+l++ev+v+deegedvevP++
  CDO71302.1 946 DERLPMKFSKLVEHVSKKPLPAHTKHLIVEVMVSDEEGEDVEVPFI 991
                 69******************************************97 PP

>> End_beta_barrel  Beta barrel domain of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.001       3.1      23      39 ..     208     224 ..     190     240 .. 0.80
   2 ?    0.8   0.0      0.16   4.7e+02      29      54 ..     247     272 ..     236     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.001
                      -TT----TT-EEEEES- CS
  End_beta_barrel  23 iedhGlfaGdfvnfsns 39 
                       + hGl+ Gdfv fs  
       CDO71302.1 208 ETRHGLQDGDFVTFSEV 224
                      578***********974 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.16
                      -TT-EEEEES-SSTT--EEEEEEEEE CS
  End_beta_barrel  29 faGdfvnfsnsavtGvsGnmtvatvi 54 
                       +Gd  nfs     Gv  ++ +  +i
       CDO71302.1 247 SIGDTSNFSEYKSGGVFTQVKMPKII 272
                      68*********999998888777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6736.33
//
Query:       CDO71303.1  [L=588]
Description: hypothetical protein BN946_scf184908.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-32  112.5   0.0    3.3e-32  111.8   0.0    1.3  1  Diphthami_syn_2  Diphthamide synthase
    2.7e-21   75.8   0.0    3.2e-10   40.1   0.0    2.8  2  Ribonuc_L-PSP    Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   3.7e-36   3.3e-32      67     215 ..      46     198 ..      42     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 3.7e-36
  Diphthami_syn_2  67 aGeeekevedLkgtlkkld.....veavviGaieseyqksriervCrelGlksvaPLWkkdpeelleeiveekfevivvavkaegldeslLGrr 155
                       G++ +e+edL + l +++     ve+v +Gai s+yq+ r+e+vCr+lG+ ++  LW++d eell e++e++ e++++ v+  gl  + LG+ 
       CDO71303.1  46 GGVRGDETEDLYELLSTVKanhpdVEGVSVGAILSNYQRVRVEHVCRRLGFTPLSYLWQRDQEELLSEMIEAGLEAVLIKVAGIGLTAKHLGKT 139
                      578899999999999999878888*********************************************************************9 PP

  Diphthami_syn_2 156 idkklidelkklsekygidkagegGeaetlvlDaPlfkkrlevkelekkwderrgyldie 215
                      +  ++   l kl+  yg + +gegGe+etl lD P+f  r++++++e+  + +  + ++ 
       CDO71303.1 140 LA-EMQGTLLKLNRLYGSHVCGEGGEYETLTLDCPIFSSRIKLDDVETVVHSDSDFATVA 198
                      96.78999***************************************9999887776664 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   3.5e-14   3.2e-10      38     108 ..     284     351 ..     274     364 .. 0.88
   2 !   32.7   0.0   6.8e-12   6.1e-08       4     118 ..     383     501 ..     381     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 3.5e-14
                    -SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE-SBSG CS
  Ribonuc_L-PSP  38 egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsaveVaaLp 108
                    e ++e+++r ++e lk+ La+  ++l++  +++vFl +++ fa+vn+vy+ +f +    Par++v++  Lp
     CDO71303.1 284 ELSIEDEVRGCFEMLKKSLAQYSLTLASCTNINVFLSSMDLFAQVNSVYGTYFGTSP--PARACVAA-DLP 351
                    7899****************************************************5..******75.455 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 6.8e-12
                    STTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGG.....EEEEEEEESSGGGHHHHHHHHHHHSSSS CS
  Ribonuc_L-PSP   4 apaaaapYsqavkagnlvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsd.....vVkvtvFladiedfaevnevyaeafdel 93 
                    apa ++pYsqa+ a++ +++sGq++l p++ +l  +++++ + + a++ +++v++a   + +         +  +la+ +d   v+e+ ae+  ++
     CDO71303.1 383 APANIGPYSQAIVADERIFISGQIGLIPSSLTLPsPQSLAFEIALAFQHVHRVVDALKNNSGGgwtghHQAIIYWLANGDDIPPVREASAEYEGDK 478
                    7999*****************************99********************98766555666653334457899999999999999999999 PP

                    TS--EEEEEE-SBSGGG-SEEEEEE CS
  Ribonuc_L-PSP  94 keaParsaveVaaLpkgakvEIeai 118
                    + aP +  veV aLpkga+ E ++i
     CDO71303.1 479 D-AP-TLFVEVPALPKGALAEKQVI 501
                    5.55.689**********9997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3997.69
//
Query:       CDO71304.1  [L=658]
Description: hypothetical protein BN946_scf184908.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-11   43.1  25.3    1.8e-10   40.3  23.7    2.8  3  MFS_1       Major Facilitator Superfamily
     0.0013   17.7   0.0       0.96    8.2   0.3    3.1  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
       0.16   11.7   1.2        7.2    6.4   0.0    2.8  2  Spore_YhaL  Sporulation protein YhaL


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   4.0   1.3e-06    0.0079     213     302 ..      76     166 ..      24     202 .. 0.64
   2 !   40.3  23.7   3.1e-14   1.8e-10      25     331 ..     101     495 ..      77     501 .. 0.75
   3 ?   -2.7   0.0      0.36   2.2e+03      67     114 ..     618     633 ..     604     645 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-06
       MFS_1 213 lialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalglallavtssavl 302
                 ++ +++++    +    l + +p+    +lgl+   l++l+  ++ + g+i+++++g++sd  +++ rr+++++ ++++++++ + +a + + ++
  CDO71304.1  76 IYLSISMGGSQVAwtveLGYGTPF--LLDLGLT-EQLTSLVWLAGPISGLIAQPVIGAISDAsTSKYRRRYWIVTSTIVLVISTLTIAYCRE-IA 166
                 444444433333355666666666..6777777.5666666777777777778888888844477777777777777777777777777722.22 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 3.1e-14
       MFS_1  25 edlgispseigllltlyalgaavaslplGrlsd....rfGrrr.vlllglllfalglllllf.....a.........ss..............lwlllv 90 
                  dlg++++  +l+  +  +  ++a++++G++sd    ++ rrr +++++ +++++++l +++     a         ++              + + +v
  CDO71304.1 101 LDLGLTEQLTSLVWLAGPISGLIAQPVIGAISDastsKY-RRRyWIVTSTIVLVISTLTIAYcreiaAlfvdllgggAGswdpkyaksvqntaIGFAIV 198
                 6899*****************************999999.6666************5555553444413334444443355555555555554446888 PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeepperk 180
                 +  l  ++  al ++   l+ d++p+e+ + a+++ s ++++G i+g+++g l +++           +r   +++ i++ + ++   +  ++ + +++
  CDO71304.1 199 SFYLLDFALNALQASLRNLLLDVTPPEQLNAANAWHSRMINAGNIVGYGFGFLPLANMPilrllggsqFRKFCVVCMIILSITVW---ITCWTQEEQER 294
                 888********************************************99988555444455555455566555555555555533...22244444444 PP

       MFS_1 181 rkspkeeekgtgpaplvp..awkallkdpvlwillialllfffgfsglltllplylqevlgls.........glllaglllallalvgailallagrls 268
                 +++ +e++     + +++    ++l  ++++  + ++ +++f+g++ +l+++++y+ +v+ +          +  ++++++ l+++v+++++ l+  l 
  CDO71304.1 295 PQRRIEKG--NSVRDVFKgiYTTILSLPKPIRRVCYVQVFAFMGWFPFLFYSTTYIGQVMAYElgrepdhdlATRTGAFAMLLYSIVAVAAGTLLPHLT 391
                 44444441..233333334333555555566568888888888*****************************779999999999999999999****** PP

       MFS_1 269 dr..........................................lgrrrrlllallllllaalglallavtssavllllvlvl.iGfglgfvfpsllal 324
                 +r                                          ++   r++++++lll+++l l+ + vt  +v+ +++lv  +G++++++  + +a+
  CDO71304.1 392 RRdtrllahegdededaelsrlrsqvrewraeaarhgkplrlpyMPFFLRNIWTGALLLFTFLTLMTFFVT--KVWQAIILVSlVGICWAVACWAPFAI 488
                 99****************99999999998888888877777775544666666666666666666666666..99999966666********9999999 PP

       MFS_1 325 asdlapp 331
                 +++++ +
  CDO71304.1 489 IMEFLKE 495
                 9998844 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.36
       MFS_1  67 lglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwf 114
                 +g +++++g                                a+ia+++
  CDO71304.1 618 FGGICTLFG--------------------------------AVIARMV 633
                 333333333................................3333333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3   0.00016      0.96      21      80 ..      95     157 ..      92     170 .. 0.74
   2 ?    1.6   0.2     0.017     1e+02     111     165 ..     143     202 ..     138     221 .. 0.77
   3 !    4.7   0.0    0.0018        11      70     142 ..     270     495 ..     260     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00016
  MFS_1_like  21 YltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkk...vvilslllsavlfl 80 
                 Y t +l + gl+ +   ++ l+ p+  ++++p++g+++D +  +      ++ s+++ ++++l
  CDO71304.1  95 YGTPFLLDLGLTEQLTSLVWLAGPISGLIAQPVIGAISDASTSKYRrryWIVTSTIVLVISTL 157
                 66789999*******************************876544434433333333344433 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.017
  MFS_1_like 111 fwilf.llvvlasfflaailvlldaatlkel....gedrkdyGrqrlfGsvGyaifafit 165
                 +wi+  ++v++ s+++ a +  + a+    l    g+   +y++     ++G+ai++f +
  CDO71304.1 143 YWIVTsTIVLVISTLTIAYCREIAALFVDLLgggaGSWDPKYAKSVQNTAIGFAIVSFYL 202
                 55554156778899999999999999999996644445556***************9964 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0018
  MFS_1_like  70 lslllsavlflsllfippskerqeesklevsvaqdvd.............................................................. 106
                 +++++ ++l + + +   ++e+qe+++ +++  + v                                                               
  CDO71304.1 270 FCVVCMIILSITVWITCWTQEEQERPQRRIEKGNSVRdvfkgiyttilslpkpirrvcyvqvfafmgwfpflfysttyigqvmayelgrepdhdlatrt 368
                 788888888888887778888888888888877777668899999999999999888888888888888888888888888888888888888888888 PP

  MFS_1_like 107 ...........................................................................................aektfwil 114
                                                                                                            + +++w  
  CDO71304.1 369 gafamllysivavaagtllphltrrdtrllahegdededaelsrlrsqvrewraeaarhgkplrlpympfflrniwtgalllftfltlmtfFVTKVWQA 467
                 888888888888888888888888888888888888888888888888888888888888888888888888888888777777777777777777777 PP

  MFS_1_like 115 fllvvlasfflaailvlldaatlkelge 142
                 ++lv+l  + +a ++    a++++ l+e
  CDO71304.1 468 IILVSLVGICWAVACWAPFAIIMEFLKE 495
                 7777777777777776666666666655 PP

>> Spore_YhaL  Sporulation protein YhaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.016        95      25      39 ..      30      44 ..      26      45 .. 0.82
   2 ?    6.4   0.0    0.0012       7.2       6      36 ..     270     301 ..     270     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.016
  Spore_YhaL 25 eEreldqefIEkEGe 39
                + ++  +e+IE+EG 
  CDO71304.1 30 ASQKSQREQIEQEGR 44
                5678899*******6 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0012
  Spore_YhaL   6 YlviagIlfSgymavkt.akeEreldqefIEk 36 
                 + v+  I++S   +++  ++eE+e  q  IEk
  CDO71304.1 270 FCVVCMIILSITVWITCwTQEEQERPQRRIEK 301
                 57999**********9736899999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 4307.26
//
Query:       CDO71305.1  [L=503]
Description: hypothetical protein BN946_scf184908.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-23   81.5   1.0    5.4e-12   46.0   0.1    4.9  5  Ank_4     Ankyrin repeats (many copies)
    7.2e-22   77.8   0.1    8.1e-15   55.2   0.0    2.4  2  Ank_2     Ankyrin repeats (3 copies)
    2.4e-17   62.8   0.5    1.2e-08   35.1   0.0    3.5  3  Ank_5     Ankyrin repeats (many copies)
    1.1e-13   50.0   0.1    0.00018   21.7   0.0    4.2  4  Ank_3     Ankyrin repeat
    3.1e-12   46.3   0.1    7.2e-05   23.1   0.0    3.6  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.031   1.1e+02       5      26 ..      10      30 ..       7      41 .. 0.76
   2 !    7.3   0.0    0.0021       7.5       2      39 ..      41      79 ..      40      83 .. 0.77
   3 !   20.5   0.0   1.4e-07   0.00051      14      54 ..     107     147 ..     106     148 .. 0.96
   4 !   46.0   0.1   1.5e-15   5.4e-12       3      55 .]     130     181 ..     128     181 .. 0.97
   5 !   28.1   0.0     6e-10   2.1e-06       2      42 ..     162     201 ..     161     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.031
       Ank_4  5 LhyaaisgrlelvrlLlekgad 26
                L +a+++++l lv++L+ k+ d
  CDO71305.1 10 LRRAVKENNLFLVKRLI-KRTD 30
                7899*************.4444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgad...inaqdnrsGetal 39
                +t L +aa  g++e+ ++Ll+ g d   i +  +++ +t l
  CDO71305.1 41 YTSLAWAAVLGHEETFEFLLSMGHDdseISK--DSENNTIL 79
                68899***************98887444544..66666666 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 1.4e-07
       Ank_4  14 lelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 l+++rl +++ +di  ++n++G talh A ++gn e +++L
  CDO71305.1 107 LRMARLYIDRYPDIIDWANAEGKTALHVASLKGNEELVRML 147
                 68999***999****************************98 PP

  == domain 4  score: 46.0 bits;  conditional E-value: 1.5e-15
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 taLh a  +g++elvr L + gad +   +++G+t+lh+A  +g++ +++lL+
  CDO71305.1 130 TALHVASLKGNEELVRMLCDLGADFDLA-DNEGNTPLHYASAWGHITVVQLLI 181
                 89*************************8.999********************8 PP

  == domain 5  score: 28.1 bits;  conditional E-value: 6e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 +t+Lhya + g++ +v+lL+e+g +  a+ n++G+t+ ++A
  CDO71305.1 162 NTPLHYASAWGHITVVQLLIERGCQYSAR-NNQGFTPSDYA 201
                 89***************************.******97777 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     2e-07    0.0007      33      77 ..      13      64 ..      10      85 .. 0.55
   2 !   55.2   0.0   2.2e-18   8.1e-15      24      82 ..     125     190 ..     104     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2e-07
       Ank_2 33 AakngnleivklLleh...ad....ndgrtpLhyAarsghleivklLlekga 77
                A+k++nl +vk L++     +    n+ +t L +Aa  gh+e++++Ll  g 
  CDO71305.1 13 AVKENNLFLVKRLIKRtdmRNpdpyNKRYTSLAWAAVLGHEETFEFLLSMGH 64
                5566655566666664344223354555566666666666666666663332 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 2.2e-18
       Ank_2  24 k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 + +gktaLh+A  +gn+e+v++L++       adn+g+tpLhyA+ +gh+ +v+lL+e+g+++ ++
  CDO71305.1 125 NaEGKTALHVASLKGNEELVRMLCDLgadfdlADNEGNTPLHYASAWGHITVVQLLIERGCQYSAR 190
                 258*********************9444567788***************************99876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.05   1.8e+02       1      36 [.      25      60 ..      25      82 .. 0.75
   2 !   34.1   0.2   6.5e-12   2.3e-08       6      56 .]     118     168 ..     113     168 .. 0.89
   3 !   35.1   0.0   3.2e-12   1.2e-08      13      56 .]     158     201 ..     155     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.05
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36
                L+++ ++++ ++ ++++t L +Aa  g+ + +++Ll
  CDO71305.1 25 LIKRTDMRNPDPYNKRYTSLAWAAVLGHEETFEFLL 60
                6677788999999**********9888877777777 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 6.5e-12
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 p  +++ + +g t+LhvA+ +g+ ++vr+L++ gad +l d++G+t+l++A
  CDO71305.1 118 PDIIDWANAEGKTALHVASLKGNEELVRMLCDLGADFDLADNEGNTPLHYA 168
                 555667777888**************************************9 PP

  == domain 3  score: 35.1 bits;  conditional E-value: 3.2e-12
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 d++gntpLh+A+  g+ +vv+lL++rg+ + +++++G t+ d+A
  CDO71305.1 158 DNEGNTPLHYASAWGHITVVQLLIERGCQYSARNNQGFTPSDYA 201
                 899***************************************98 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.1   1.1e+04       8      23 ..      12      27 ..      10      29 .. 0.81
   2 ?    3.8   0.0     0.032   1.1e+02       3      26 ..      41      63 ..      39      65 .. 0.89
   3 !   19.3   0.0     3e-07    0.0011       1      30 [.     127     155 ..     127     156 .. 0.95
   4 !   21.7   0.0   4.9e-08   0.00018       1      27 [.     160     185 ..     160     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.1
       Ank_3  8 lAarsgnleivkfLle 23
                +A++ +nl +vk L++
  CDO71305.1 12 RAVKENNLFLVKRLIK 27
                6888888888999997 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.032
       Ank_3  3 etpLhlAarsgnleivkfLlenkg 26
                +t L +Aa  g+ e  +fLl  +g
  CDO71305.1 41 YTSLAWAAVLGHEETFEFLLS-MG 63
                799*****************9.66 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 3e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G t+Lh+A + gn e+v++L++  gad++
  CDO71305.1 127 EGKTALHVASLKGNEELVRMLCD-LGADFD 155
                 599********************.****87 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 4.9e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G+tpLh+A   g++++v++L+e +g+
  CDO71305.1 160 EGNTPLHYASAWGHITVVQLLIE-RGC 185
                 69*********************.897 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.64   2.3e+03       4      24 ..      42      63 ..      41      70 .. 0.78
   2 !   18.6   0.0     5e-07    0.0018       2      32 .]     128     159 ..     127     159 .. 0.87
   3 !   23.1   0.0     2e-08   7.2e-05       2      31 ..     161     191 ..     160     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.64
                BHHHHHHHHTTHHHHHHHH.TT CS
         Ank  4 TPLHlAatngkkriiklLL.hG 24
                T L +Aa  g+++  ++LL  G
  CDO71305.1 42 TSLAWAAVLGHEETFEFLLsMG 63
                667788889*******999435 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5e-07
                 SBBHHHHHHHHTTHHHHHHHHT.TTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLLh.GAnlnaldn 32 
                 G T+LH+A+  g+++ +++L + GA+ ++ dn
  CDO71305.1 128 GKTALHVASLKGNEELVRMLCDlGADFDLADN 159
                 9******************9755**9887775 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 2e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPLH+A+  g+  +++lL+ +G+   a++
  CDO71305.1 161 GNTPLHYASAWGHITVVQLLIeRGCQYSARN 191
                 9********999999******8885445665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3176.03
//
Query:       CDO71306.1  [L=129]
Description: hypothetical protein BN946_scf184908.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   14.3   0.1      0.047   13.8   0.1    1.3  1  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51


Domain annotation for each model (and alignments):
>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.6e-06     0.047      11      28 ..      68      85 ..      30      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-06
    zf-Mss51 11 apkhvdfeCpdCGiptyc 28
                ++k+ +f Cp+C++p+ +
  CDO71306.1 68 HEKQYRFHCPRCALPVAY 85
                7999***********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.36s 00:00:00.91 Elapsed: 00:00:00.57
# Mc/sec: 681.59
//
Query:       CDO71307.1  [L=773]
Description: hypothetical protein BN946_scf184908.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   22.5   0.0    0.00019   21.8   0.0    1.3  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-08   0.00019     104     160 ..     412     468 ..     405     469 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-08
                 --STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT- CS
      Cyclin 104 vvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFd 160
                 +++++  +Rl++ + + a K l+D   sn+ +  + +++++ LnkLE   l + ++d
  CDO71307.1 412 TIEAYAPFRLVLLGCMLANKWLDDHTFSNKTWHTISNVPIRSLNKLEALALDIFQYD 468
                 6889999****************************************8666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 5102.26
//
Query:       CDO71308.1  [L=1066]
Description: hypothetical protein BN946_scf184908.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.9e-114  381.7   0.0    1.8e-66  225.2   0.0    3.4  2  DUF3402   Domain of unknown function (DUF3402)
    1.9e-60  204.5   3.6    1.2e-38  132.9   2.9    2.3  2  N1221     N1221-like protein


Domain annotation for each model (and alignments):
>> DUF3402  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0     2e-70   1.8e-66       1     353 [.     401     734 ..     401     748 .. 0.76
   2 !  148.9   0.0   2.7e-47   2.5e-43     351     442 ..     757     847 ..     754     887 .. 0.92

  Alignments for each domain:
  == domain 1  score: 225.2 bits;  conditional E-value: 2e-70
     DUF3402   1 PasilEAgelfskrvrmtramrqlweerekflkfergweedd..eeedd...................dleeltleekee....eeeevdegpkkeels 74 
                 P +i EA++l+sk+++++++  q+w+ re+ + +e g e     e+ ++                   d+ +l+++  e+    +e+++ +++++++++
  CDO71308.1 401 PFAIDEADRLYSKHMYVSLSLWQMWKTREECMTVESGLEYLPgaERPNEpkippisptvedetgeklpDVAHLDAKIAEAekamAEADTPAEERRARER 499
                 899**********************************98655544444478999999998899999997776666655544333555555555566666 PP

     DUF3402  75 eeekkrleavekfYkeaLphLqslvivllklilanvtalvtqqskakeqsinilaaelseeeelseksasgreknkkkgeakelskeeldaartrEitl 173
                 +e+  rl++ve++Y+++Lp L+  v vllkl+la+v+     +++        +   l++  +++ ++          g  k ++ +e+d+ar+rEit+
  CDO71308.1 500 REDLMRLKRVEQIYSAVLPVLPGWVLVLLKLLLATVS-----TTNGGAPLHPAAVPGLPPGVTSPLDQ----------GPPKPTTLDETDVARHREITS 583
                 6688999******************************.....22222222123333333333332222..........23345789************* PP

     DUF3402 174 kAvsgillllLKwfklshvlkfeyltqlLldsnylpLvlklfahqdvqqvveskndreelsFFqfcnlrskekekeeseseeeeeeeseddaapppikr 272
                 kAvs+illl L+wfk+shv+kf+ l qlLld n+l L+lk+f  q+v+ +v +k d  e +FF++c++r  ++++        ee+          ++r
  CDO71308.1 584 KAVSAILLLTLQWFKMSHVMKFHHLGQLLLDTNCLLLILKIFGLQEVSATVVAKADIPERNFFRYCQVRYARRSDM----GGAEEQ----------MQR 668
                 ********************************************************************88863322....222211..........112 PP

     DUF3402 273 krssekaeeeeeeeeeeeeatrpevdelgyPvnplpeep...itdfswrnffslinlLrilqkicknkahRnllLvqyksseiL 353
                   ++                    v+    P  +  +e+    tdfswrnffs+in+ +i+qk+ k+++hR+ +Lvqykss   
  CDO71308.1 669 PTRQ------------------TVVRTTTLPNGQERTEEvdlLTDFSWRNFFSTINFAKIMQKLSKHRSHRIRMLVQYKSSVSV 734
                 1111..................123333333333333333448*************************************9765 PP

  == domain 2  score: 148.9 bits;  conditional E-value: 2.7e-47
     DUF3402 351 eiLkkaLkvpqpeLrlytLKllKnqvpYcGrkWrqsNMrvitaiYlhcrpeLrDdWlagsdvdaeveealplEqaLrglthwfnlrrYpdkm 442
                  +Lk++Lkv++p+L+l +LKl+K+qvp+cGrkWrqsNM+vitaiYl+crp+LrD+Wl+g +vd +v +a+++EqaLr l++++n +rY  ++
  CDO71308.1 757 AVLKRILKVQHPMLQLHVLKLIKSQVPFCGRKWRQSNMQVITAIYLNCRPDLRDEWLTGIEVD-DVYDAQAQEQALRHLVKFYNNKRYGVQA 847
                 68************************************************************9.5889********************9887 PP

>> N1221  N1221-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   2.9   1.4e-42   1.2e-38       2     183 ..      40     222 ..      39     224 .. 0.93
   2 !   70.2   0.0   1.8e-23   1.7e-19     211     285 ..     227     298 ..     222     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.4e-42
       N1221   2 aydFeykdsdsleeEldeWFsysdvvlllkakkaFeskweevseeeeeWedvdederkkfverllesless.dkaRlealeallYialGtwgetkstse 99 
                  ydF+y+d d++ +E++e++sy ++ ++ ++ ka+e +++ +      W++++  +rk++v+ llesle++ +++R++++++l+Y+++Gt++et+s+++
  CDO71308.1  40 YYDFQYNDEDTVLNEIEEFYSYVEMPQVAENLKAWEGSFSGE------WTTSSFAQRKAHVDILLESLEHRdAEIRFTNARRLFYVLQGTFAETTSQED 132
                 59***********************9999***********99......**********************95555************************ PP

       N1221 100 qleaikenvkllreagglealwealkkafekereds..edekkae......e..qqlqeesselallltilYllvevareeseddeelreelle 183
                 ql++i en+k++r a+g+ +++ea+k a +k++     +d+++a+      e  +  +e ++el ++l +lY++vev+      ++++++el++
  CDO71308.1 133 QLHWIFENCKVVRAANGVTSIVEAIKIASSKHDLLCtlSDADAAHfnispqEksDFMEEVTTELSVYLGMLYHMVEVFKG----QDDFADELIS 222
                 ********************************9999765555555899987257999***********************....7888888875 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 1.8e-23
       N1221 211 killLlwKllLlvfGgteelkevkkalrelhglseeskekekkplitasPldYhaFrqeitskYPaynppepllp 285
                 ++ll+lwK++L+++Gg++el+ vkk++rel+gl  + +e+     i+ sPld +aFrqei+ kYP++npp+ +++
  CDO71308.1 227 QLLLVLWKTILTCCGGIRELASVKKLTRELAGL-APVPEE--AFPIKSSPLDLEAFRQEISVKYPTFNPPPVTIQ 298
                 89*******************************.444443..334*************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 6510.92
//
Query:       CDO71309.1  [L=593]
Description: hypothetical protein BN946_scf184908.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-92  310.2   0.0    4.9e-53  180.5   0.0    2.9  2  Diphthamide_syn  Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   1.3   3.5e-40   6.3e-36       1      90 [.     135     228 ..     135     270 .. 0.92
   2 !  180.5   0.0   2.7e-57   4.9e-53      88     297 ..     286     554 ..     271     559 .. 0.87

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 3.5e-40
  Diphthamide_syn   1 fPegllpdsaeiadileef.gaevvilgDttYGaCcvdevaaehlgadllvHyGhsclspvd..rlpvlYvfveieldvehlvetlkknf.kek 90 
                      +Pegl++++++iadi+e+f +a +vi+gD+tYGaCc+d+++a +lg+d+lvHyGhscl+p+d  ++++lYvfvei++d++hlv+t++ nf +++
       CDO71309.1 135 MPEGLQMFACTIADIIEKFtDALTVIMGDVTYGACCIDDYTAVALGCDMLVHYGHSCLVPIDqtTIKTLYVFVEISIDSSHLVQTIRLNFpSDR 228
                      8***************7776999**************************************999**************************4333 PP

  == domain 2  score: 180.5 bits;  conditional E-value: 2.7e-57
  Diphthamide_syn  88 kekkkivlvstiqyahaleevkeele........................ee..............gyevvkvpqsekplspgevlgctspklk 143
                      +e ++++lvstiq++ al+++k+ l                         e+              +y+v+ +p++ kplspge+lgct+p+l+
       CDO71309.1 286 SEPTRLALVSTIQFVAALSRLKDDLAvdysdphdpsnstgsipifdpeggEDatlqalgrprlwtgKYDVT-IPRA-KPLSPGEILGCTAPQLN 377
                      456779********************777777777666666666665555115556666666777678888.9999.****************5 PP

  Diphthamide_syn 144 eeeeevdailyigdgrfhllslmlsnpklpvyrydpyskklteesydakkllrrRyaaiekakdakk.......................vGii 214
                          +vda+ly+gdgrfhl+s+m++np++p++rydpyskklt+e+yd+ ++   R +a++ a+++                         +G++
       CDO71309.1 378 ----DVDALLYLGDGRFHLESIMIANPDVPAFRYDPYSKKLTRERYDHVEMRTVRDEAVQAARRSIFshasrthssalassptplseqpmWGVV 467
                      ....79*********************************************************9433445669********************* PP

  Diphthamide_syn 215 vgtlgvqgrlelverlkkllkeag..kksylvlvgelnpakLanfa.eidafVlvaCprlsiddgkeFekPvltpyElevalg.ere 297
                      +gtlg+qg+++ ++ + ++l  a   + ++ +l++el+pakLa f+ +i afV+++Cprlsid+g++Fe+P+l+pyE  va+g +  
       CDO71309.1 468 LGTLGRQGSFKQLRAITQQLVGAPtpIPYMPILLSELSPAKLALFNpHIAAFVQTSCPRLSIDWGYAFERPLLSPYETAVAVGkAAG 554
                      ********************98876689*****************867**********************************95555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4032.30
//
Query:       CDO71310.1  [L=1401]
Description: hypothetical protein BN946_scf184908.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-81  272.0   6.0    6.5e-81  271.5   6.0    1.2  1  NPC1_N          Niemann-Pick C1 N terminus
    2.4e-63  214.5   9.7    7.5e-35  120.3   0.3    3.7  3  Patched         Patched family
    3.4e-45  153.6  15.9    1.9e-24   86.2   0.2    3.5  3  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
    6.1e-05   20.9   4.7    6.1e-05   20.9   4.7    1.7  2  ACR_tran        AcrB/AcrD/AcrF family
    0.00038   20.4   0.6    0.00077   19.4   0.6    1.4  1  Folate_rec      Folate receptor family


Domain annotation for each model (and alignments):
>> NPC1_N  Niemann-Pick C1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.5   6.0   1.8e-84   6.5e-81       2     244 .]       5     238 ..       4     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: 271.5 bits;  conditional E-value: 1.8e-84
      NPC1_N   2 grCalygeCgkksifgkelpcpyngpakelseearelLkelCpelfkeetkvCCdeeqletLkknlklaeellsrCpaClknflnlfCeftCspdqskF 100
                 grC+++g+Cg k ifgk lpcp +gp+++ ++  ++lL++lC+ +f+ ++++CC+++qletL++nl +ae+l+s+CpaC++nf++++C+ftCsp+q++F
  CDO71310.1   5 GRCVMRGSCGPKVIFGKPLPCPFDGPPSK-DDVDHNLLATLCGPDFA-DGPTCCTTDQLETLRDNLGMAENLISSCPACRNNFRQIWCSFTCSPNQATF 101
                 89************************998.566789**********9.*************************************************** PP

      NPC1_N 101 lnvtktekkkeekeavkevdyliseefaekfydSCkdvkfpatngkamdlicGgaakknaqkwlkflgdekanggsPfqinfklseeeeeeeegmepln 199
                 lnvt+t++++++++avk+vd+++se+f+++fydSCkd+k++atng+amdl++Gga  k+++++lkf+gdek++ gsPfqinf+     ++++  ++pln
  CDO71310.1 102 LNVTETQTSTTGETAVKSVDFFVSERFGRGFYDSCKDIKMGATNGYAMDLLGGGA--KDYHAFLKFMGDEKDM-GSPFQINFP-----STAPPAYSPLN 192
                 *******************************************************..**************65.*********.....4688999**** PP

      NPC1_N 200 eetlkCnesldessaCsCvDCeesCpakpelpelke..sfkvggldg 244
                 ++ ++C  ++d +s+C+C+DC ++C++ p++p++++  +++vg +++
  CDO71310.1 193 TTSRNCY-DNDLASRCTCIDCLDVCEKLPDIPPPNAepTCHVGLVSC 238
                 *******.9999*************9877777666667****99887 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00015      0.55     144     237 ..     530     629 ..     517     651 .. 0.76
   2 !  120.3   0.3   2.1e-38   7.5e-35     249     494 ..     684     984 ..     680     997 .. 0.92
   3 !   86.7   3.4   2.9e-28     1e-24     597     808 ..    1136    1362 ..    1086    1364 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00015
     Patched 144 gvkveeeeg..tlksakaivlqyflkldeeev.eelskeyerelekllkdkyase....hievsilhsqiledelqrnaktllpflvvtiaiLlvfsii 235
                 +v  e eeg  +  +aka+v++y     ++ + +  + e+e +l ++l++ +a       +e+   +  +le+e+++  +t +  +v++ + ++ ++++
  CDO71310.1 530 AVPKE-EEGrkEYLDAKALVVTYVVPDSQNASeQAKAIEWEFALRDYLQKLEARApeqaGLEIAWSTGISLEEEINKSTNTDIKIVVLSYVAMFFYVAF 627
                 44333.34401445689999999876555555055688**********987665444557999999999***************************998 PP

     Patched 236 vs 237
                 + 
  CDO71310.1 628 TL 629
                 86 PP

  == domain 2  score: 120.3 bits;  conditional E-value: 2.1e-38
     Patched 249 wvrskpilailgvlspvlAivsslGlllwlGfrfns.ivtvtPFLvLaiGvDdmflmvaawkrteakls.............................. 316
                 +v sk+ l + g+   +l+i+ss+Gl ++lG++    i  v+PFLvLa+GvD++f++v++ +r +  +                               
  CDO71310.1 684 FVGSKFTLGLFGIALVILSISSSVGLFSALGVKVTLiIAEVIPFLVLAVGVDNVFILVHELDRQNLLHGpnassgvggpswaysdnysyrhttpmsptq 782
                 5789****************************99861568*************************9998999*************************** PP

     Patched 317 ..................................vkkrigealseagvaitiTslTdvlsFgiGaittlpaiqlFciytavailfdfiYqitffaavla 381
                                                   +++r++++l+  g++i++ ++T+ ++F++Ga+ ++pa+  F++y+a +++++ + q+t+f ++l+
  CDO71310.1 783 srvrsglesqerdgepdheqeisldagstpqylsAEERVARTLAKMGPSILLSTVTETIAFALGALVPMPAVRNFALYAAGSVFLNAVLQVTVFVSALV 881
                 ********************************************************************************************9998888 PP

     Patched 382 iaakaeaegrhsllliiekeespsklqeiesessekdddkskeaeelkskffreiyapfllnksvrlvvlllfvvylaiaiyGcvnikegLepkklvle 480
                 +  k+  ++r  +++++     p    +i+  + ++   +s+  +   ++f+r+ yapfll++ v+ vvll+f   l+ ++  + +i+ g++   ++ +
  CDO71310.1 882 VDLKRVEASRVDCFPCVR---MP---PRIALLE-AP--TPSSGLSF-LARFIRKRYAPFLLKPLVKGVVLLVFGGVLVASTISMQHIRLGFDQRLAFPS 970
                 887777777799999977...23...4666666.34..57777766.89************************************************** PP

     Patched 481 dsplvevlklieke 494
                 ds+l++++  ++ +
  CDO71310.1 971 DSYLIPYFDSVDAY 984
                 ********998654 PP

  == domain 3  score: 86.7 bits;  conditional E-value: 2.9e-28
     Patched  597 eettelkkfrftlalkdlseptdrtkllkelRsiadkese.lnvtv..fdedaafadqlltilpstiqnivlallcmfvvallfipelitvlvitls 690 
                  e++ e+ +  f++  + l+  +d  ++      iad  s    +tv  +  ++ f dq+  i + t q + l l+ +++v ++++ +  t  ++t++
  CDO71310.1 1136 EDGSEVVASHFRTFHRPLKSQADFINSFAAAQRIADDLSReTGATVfpYSLHYVFFDQFAHIVAITEQILGLGLAAVLLVTAVLLGSWRTGTIVTSV 1232
                  5555666666666666666666666666666667766554445555116778999****************************************** PP

     Patched  691 ivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekd..........dakeRvvealealgwPvvqgalST.ilgvlvLlfvd 776 
                  ++ + + v+G++ +Wg+dL +is++++++s G +v++ aH+a af+++ +           + +eR+  al  +g  v+ g + T ++g+ vL++  
  CDO71310.1 1233 VALTVLSVMGVMGVWGIDLNAISLVNLVISLGIAVEFCAHVARAFMSAGSGlpvdhpagqkERDERMWIALVDVGPSVLSGITFTkLIGMCVLALTR 1329
                  **********************************************9988677777888778899****************99884679******** PP

     Patched  777 symvqvFfktvvLvvvi.gllHgLlilPillsl 808 
                  s   +++   ++++++i g+lHgL++lP++lsl
  CDO71310.1 1330 SKFLEIYYFRMWITLIIsGALHGLVLLPVVLSL 1362
                  *****98777777766649************97 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   1.9   1.1e-23   4.1e-20       2      64 ..     685     747 ..     684     755 .. 0.95
   2 !   86.2   0.2   5.3e-28   1.9e-24      63     152 ..     810     899 ..     804     900 .. 0.96
   3 ?    2.8   1.9     0.026        93      12      88 ..    1229    1313 ..    1222    1362 .. 0.74

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 1.1e-23
                     HHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHH CS
  Sterol-sensing   2 vkskfgLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrt 64 
                     v skf+Lgl+g++ v+ls+ ss+gl+++lg+++tlii+ev+Pflvlavgvdn+f+lv++++r 
      CDO71310.1 685 VGSKFTLGLFGIALVILSISSSVGLFSALGVKVTLIIAEVIPFLVLAVGVDNVFILVHELDRQ 747
                     88********************************************************99886 PP

  == domain 2  score: 86.2 bits;  conditional E-value: 5.3e-28
                     HHHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTXXTTTXXXX CS
  Sterol-sensing  63 rtsrsldeseriaealgevgpsilltsltellalllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreeserldvlcclk 152
                     +t++ l+ +er+a++l ++gpsill+++te++a++lgal+ +pav++F+l+aa +v+++ +lq+t+Fv+ L +d++r+e++r+d+++c++
      CDO71310.1 810 STPQYLSAEERVARTLAKMGPSILLSTVTETIAFALGALVPMPAVRNFALYAAGSVFLNAVLQVTVFVSALVVDLKRVEASRVDCFPCVR 899
                     67888999********************************************************************************97 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.026
                      HHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH.........HHHHHHHHHHHCCCCHHC CS
  Sterol-sensing   12 gviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde.........seriaealgevgpsillt 88  
                       + +v+l+v+s +g++ + g++l+ i+l v   + l + v+    + +a+ +  + l++         +er+  al +vgps+l+ 
      CDO71310.1 1229 VTSVVALTVLSVMGVMGVWGIDLNAISL-VNLVISLGIAVEFCAHVARAFMSAGSGLPVdhpagqkerDERMWIALVDVGPSVLSG 1313
                      5678999*******************99.887778888888888888998887777666666677777889999999999987653 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.12   4.4e+02     290     351 ..     563     624 ..     557     629 .. 0.86
   2 !   20.9   4.7   1.7e-08   6.1e-05     310     399 ..    1182    1267 ..    1154    1269 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.12
                 SBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran 290 anaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflF 351
                 a aie   a ++ l++L++  Pe++ ++++  +    ++ i++  +t +  +vL  + +f +
  CDO71310.1 563 AKAIEWEFALRDYLQKLEARAPEQAGLEIAWSTGISLEEEINKSTNTDIKIVVLSYVAMFFY 624
                 556666667889999999999***********9999******99999999999999999976 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.7e-08
                  SSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHH CS
    ACR_tran  310 lPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvv 399 
                  +P ++++v ++d+   + a    +++ L ++++ v+lv  + L+++r+  i++ +v l +l  + v+ ++g+ lN+++L+ Lv+  G+ v
  CDO71310.1 1182 FPYSLHYV-FFDQFAHIVAI---TEQILGLGLAAVLLVTAVLLGSWRTGTIVTSVVALTVLSVMGVMGVWGIDLNAISLVNLVISLGIAV 1267
                  55555554.34444444322...34445666666777777889********************************************987 PP

>> Folate_rec  Folate receptor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.6   2.2e-07   0.00077      28     109 ..      52     138 ..      27     151 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.2e-07
                 S.BSSBHHHHHHTTSSSXTTTSS.TTTTSCXXHHHHHHHHHHHHHHHHXSCCGGGEEE.........TCCEEEXSEE..EXHHHHHHHHHHTTT CS
  Folate_rec  28 n.sCCtsetseelssdesilanfrwerCgelsqeCekfleqlecfyecsphlglwikp.........erkerilkvp..LCeelCdawfeaCke 109
                   +CCt+++ e+l  + ++ +n+      +  ++C++ + q+ c++ csp+++++++          e  ++++ v   + e + + ++++Ck+
  CDO71310.1  52 GpTCCTTDQLETLRDNLGMAENL-----ISSCPACRNNFRQIWCSFTCSPNQATFLNVtetqtsttgE--TAVKSVDffVSERFGRGFYDSCKD 138
                 348***********999997765.....456699*********************5443456666333..334444334777777788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 8883.34
//
Query:       CDO71311.1  [L=221]
Description: hypothetical protein BN946_scf184908.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   32.9   0.7    1.6e-06   29.4   0.2    2.2  2  RNR_inhib  Ribonucleotide reductase inhibitor


Domain annotation for each model (and alignments):
>> RNR_inhib  Ribonucleotide reductase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2     9e-11   1.6e-06       1      94 [.      26     121 ..      26     131 .. 0.64
   2 ?    2.2   0.0     0.024   4.4e+02      47      85 ..     139     182 ..     121     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 9e-11
   RNR_inhib   1 sLlsVGmRVRKsVpeGYktgsvysafklwsdkstakksksstsssasaasanrellpfcGinkvgglavqseeeaspat.....eeenaavddadaesl 94 
                 +L sVG RVRKsV eG++ + +     +   ++t++ + ++t s  s++ a rell+  ++++ g  ++ s +++ p+      ++e+ a+ ++d+++l
  CDO71311.1  26 KLRSVGTRVRKSVTEGFQRTVS---VPADPISATKRLPFTQTPSFISSNDAMRELLAARAAKNKGTSSAPSSPQQRPKRtlggeDDEEDADLEEDEMNL 121
                 589**************85552...34444455566666666666679**********99877774444434444443346655444444444444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.024
   RNR_inhib  47 s....aasanrellpfcG.inkvgglavqseeeaspateeenaa 85 
                 +     ++++re+ p +  +++ gg+a+qs + +  ++++e+a+
  CDO71311.1 139 AarlkEEKNKREIRPLKRsASRPGGVATQSLPASMFRFSHEPAN 182
                 12355788899999998647889999999777766666444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1603.87
//
Query:       CDO71312.1  [L=484]
Description: hypothetical protein BN946_scf184908.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.007   16.8   1.1      0.007   16.8   1.1    3.7  3  zf-C2H2     Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.043   14.7  15.6        1.4   10.0   2.2    3.7  3  zf-C2H2_4   C2H2-type zinc finger
        0.2   12.1  17.0          4    8.0   3.9    3.8  3  zf-H2C2_2   Zinc-finger double domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.023   1.4e+02       1      23 []     374     398 ..     374     398 .. 0.92
   2 ?    4.4   3.2      0.01        61       2      23 .]     405     426 ..     404     426 .. 0.93
   3 !   16.8   1.1   1.2e-06     0.007       1      23 []     432     459 ..     432     459 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.023
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y+C   +Cg++ kr+++  +H  +H
  CDO71312.1 374 YRCYvnGCGQRNKRRDHILVHVGSH 398
                 899999**************98777 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.01
                 EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                 +C+ Cg++F rk + krH ++H
  CDO71312.1 405 RCETCGMRFLRKNECKRHESSH 426
                 8************999999988 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1.2e-06
                 EEETTTT....EEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCg....ksFkrksnLkrHirt.H 23 
                 + C +C     + F r+++LkrH+r+ H
  CDO71312.1 432 FSCQICAphqeRNFVRQDLLKRHMRVtH 459
                 88****9******************999 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3     0.044   2.6e+02       1      23 [.     374     398 ..     374     399 .. 0.90
   2 ?   10.0   2.2   0.00023       1.4       2      23 ..     405     426 ..     404     427 .. 0.94
   3 ?    9.8   0.9   0.00027       1.6       1      24 []     432     459 ..     432     459 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.044
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 ++C +  Cg++ ++++++l H+ +h
  CDO71312.1 374 YRCYVngCGQRNKRRDHILVHVGSH 398
                 7888888**************9988 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00023
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C+ Cg +F +k++ +rH  +h
  CDO71312.1 405 RCETCGMRFLRKNECKRHESSH 426
                 8*****************9998 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00027
   zf-C2H2_4   1 fkCpiC....gksFsskkaLlrHlkthH 24 
                 f C iC     ++F +++ L+rH++  H
  CDO71312.1 432 FSCQICaphqERNFVRQDLLKRHMRVTH 459
                 78**********************9876 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2   0.00075       4.5       5      25 ..     394     414 ..     388     415 .. 0.81
   2 ?    8.0   3.9   0.00067         4       3      21 ..     420     438 ..     418     440 .. 0.94
   3 ?    3.4   0.9      0.02   1.2e+02       2       9 ..     451     459 ..     451     465 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00075
   zf-H2C2_2   5 HirkHtgekpyeCplCdkaFk 25 
                 H  +H   +p+ C+ C+ +F 
  CDO71312.1 394 HVGSHVEHRPWRCETCGMRFL 414
                 667777779********9996 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00067
   zf-H2C2_2   3 rrHirkHtgekpyeCplCd 21 
                 +rH  +H g kp+ C  C+
  CDO71312.1 420 KRHESSHGGRKPFSCQICA 438
                 7****************95 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.02
   zf-H2C2_2   2 LrrHirk.H 9  
                 L+rH+r+ H
  CDO71312.1 451 LKRHMRVtH 459
                 89****835 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3302.66
//
Query:       CDO71313.1  [L=323]
Description: hypothetical protein BN946_scf184908.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-31  108.6   4.1    2.9e-31  107.9   4.1    1.3  1  CIAPIN1    Cytokine-induced anti-apoptosis inhibitor 1, Fe-S 
    8.5e-07   29.3   0.0    1.4e-06   28.6   0.0    1.3  1  DRE2_N     Fe-S cluster assembly protein DRE2 N-terminus


Domain annotation for each model (and alignments):
>> CIAPIN1  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   4.1   3.3e-35   2.9e-31       7     100 .]     215     316 ..     209     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 3.3e-35
     CIAPIN1   7 eCe...kkakkrrkackdctCGlkeleeeeekkkr.aaadkalekk....vkleeeelaevdftvegktssCgsCaLGDafrCsgCPylGlPafkpGek 97 
                  Ce     a +r+kack+ctCGl+ele+ee ++++    d +++ +     + e+e l+   +++ ++tssCg+C+LGDafrCs+CPy GlPafkpGek
  CDO71313.1 215 VCEpavRGAPRRKKACKNCTCGLAELEAEELAQSKvVLLDGSQNGQtmevSQSEKERLMAAAAAAPKATSSCGNCYLGDAFRCSSCPYRGLPAFKPGEK 313
                 56632234569*****************99966551445555443233333445556667777899999****************************** PP

     CIAPIN1  98 vel 100
                 ve+
  CDO71313.1 314 VEI 316
                 *97 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.5e-10   1.4e-06      20     131 .]      49     164 ..      34     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.5e-10
                 HHHHHHHTTEEEEEEEHHHHHHT-----SSS--SEEEE---..SS-S----HHHHHHHHTT--TT--EE--.-H....HHHHHHHHHTEEEE-SSS... CS
      DRE2_N  20 aikklydsrsstdlqmlDRlaaglvsLpastYdlvllltdeeeeeeelliprkliqkivkaLkpgGklkgq.dgkakeaqkleallaGlvieeeekge. 116
                 ++ ++ +++ +++ +m+DRl +g  +L+ s++  v++    +e++      ++l++++ + L+p G+l+    g+a  +   e  laG+++ + ++++ 
  CDO71313.1  49 SLITSLEQSRQVERHMVDRLLDGATTLSPSSFASVHVSLSPSEYNALAPRLSELLAQLLAGLEPLGTLHIMnLGSALPTLPSELTLAGFTVLTASQEGt 147
                 44444444789*************************95555345333333469***************9751555566************997777778 PP

                 ..EEE-XXXXXXXXXXX CS
      DRE2_N 117 ..lvKpeqeeeeavpLk 131
                    +Kp+ +++  v+Lk
  CDO71313.1 148 liAQKPAHSTASNVSLK 164
                 99999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2404.38
//
Query:       CDO71314.1  [L=434]
Description: hypothetical protein BN946_scf184908.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.022   15.3   3.3      0.054   14.1   3.3    1.7  1  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.3     3e-06     0.054      18      57 ..      71     107 ..      54     108 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-06
  FoP_duplication  18 rgrgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLD 57 
                      ++ ++g+  +++grgrgrgg +g   k++  ++ L ++LD
       CDO71314.1  71 GASRGGRDARGRGRGRGRGGAHG---KPASKRDVLKMQLD 107
                      33333333335555555555555...77777788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2955.05
//
Query:       CDO71315.1  [L=155]
Description: hypothetical protein BN946_scf184908.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1096.58
//
Query:       CDO71316.1  [L=309]
Description: hypothetical protein BN946_scf184908.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-31  105.9   0.0    1.4e-30  105.4   0.0    1.2  1  Forkhead  Forkhead domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   7.8e-35   1.4e-30       1      82 [.      58     139 ..      58     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 7.8e-35
                 ------HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-T.TSS--EEE--TTH CS
    Forkhead   1 skPpysYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreee.egkgslwtidpes 82 
                 skP y Y++LI  Aik sp++kl L++Iy  ie++fpy+rt a+ gW+nS+rhnLsln cFekvpr+ + +gkgs+wt++++ 
  CDO71316.1  58 SKPFYPYSTLIRYAIKGSPNGKLLLEDIYYAIESRFPYFRT-APPGWKNSVRHNLSLNPCFEKVPRPLTdRGKGSYWTVNDNV 139
                 69***************************************.5***********************655369*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2260.13
//
Query:       CDO71317.1  [L=195]
Description: hypothetical protein BN946_scf184908.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.044   14.2   3.6      0.083   13.3   2.7    1.9  2  Tim17     Tim17/Tim22/Tim23/Pmp24 family
       0.19   11.0   0.0       0.26   10.6   0.0    1.1  1  SCF       Stem cell factor


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.7   9.2e-06     0.083       8     107 ..      28     141 ..      25     145 .. 0.60
   2 ?    6.8   0.3   0.00094       8.4      82     103 ..     113     137 ..     109     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.2e-06
       Tim17   8 sgvlGallGavfglvkgsrradtp.............apsker........lreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaA 85 
                 + ++G  +G + g +++s r  ++             +             l  gl+ +g+ + +lG +++ +     ++e ++ +l g +d   +vaA
  CDO71317.1  28 AILVGTTIGLFRGSRTASLRFLAEnahrpprtvrgwyL----YnktknyrvLLGGLKGAGADATKLGLTAAGW----VMLEEGCTRL-GLDD-AREVAA 116
                 55566666666666666655555477776655555552....0333333356666666666666666665555....5668888888.6677.88**** PP

       Tim17  86 GaltGall.r..agpqaaavgaigg 107
                 G+ tGal+ +  + p aa+    g+
  CDO71317.1 117 GLGTGALFgAvyGLPWAAIRRTTGL 141
                 ********43533366666665555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00094
       Tim17  82 svaAGaltGall.r..agpqaaavg 103
                 +vaAG+ tGal+ +  + p aa+  
  CDO71317.1 113 EVAAGLGTGALFgAvyGLPWAAIRR 137
                 5677777777773242224444444 PP

>> SCF  Stem cell factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     3e-05      0.26     213     257 ..     129     173 ..     121     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3e-05
         SCF 213 slqwiaialpsllslliGfilGalywkkkqpklkleveniqinee 257
                 +l w+ai  ++ l lliG +l al w k+  + + +v + q ++e
  CDO71317.1 129 GLPWAAIRRTTGLGLLIGGTLRALRWSKEYLREQAAVRAQQLEDE 173
                 689*****************************9999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1337.49
//
Query:       CDO71318.1  [L=917]
Description: hypothetical protein BN946_scf184908.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-63  212.5   0.2    1.3e-62  211.5   0.0    1.6  2  Pkinase         Protein kinase domain
    1.3e-28  100.0   0.0    2.2e-28   99.2   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    1.5e-16   60.8   0.5    1.5e-16   60.8   0.5    3.2  3  Pkinase_C       Protein kinase C terminal domain
    2.4e-12   47.1   0.1    1.7e-07   31.5   0.0    2.4  2  C2              C2 domain
    8.5e-07   28.2   0.0    1.6e-06   27.3   0.0    1.5  1  Haspin_kinase   Haspin like kinase domain
    2.9e-06   26.8   0.1    1.9e-05   24.1   0.0    2.2  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.025   14.5   1.7      0.032   14.2   0.0    1.8  2  APH             Phosphotransferase enzyme family
      0.032   13.6   0.0      0.058   12.7   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.073   12.6   0.0      0.073   12.6   0.0    1.9  2  Choline_kinase  Choline/ethanolamine kinase
      0.091   12.4   7.0       0.32   10.6   0.1    3.0  3  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.099   11.4   3.3       0.21   10.3   0.0    2.6  3  Pkinase_fungal  Fungal protein kinase
        9.9    4.8   9.8         16    4.1   9.8    1.3  1  Presenilin      Presenilin


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   1.7       7.1   1.1e+04     222     238 ..      46      62 ..      23      74 .. 0.41
   2 !  211.5   0.0   8.8e-66   1.3e-62       1     264 []     379     659 ..     379     659 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 7.1
                 SHH...HHHTTS-HHHH CS
     Pkinase 222 etkeklpeaseiseeak 238
                 +++++ +++++ ++  k
  CDO71318.1  46 QQQQQQQQQQQQQQAQK 62 
                 11222222222222222 PP

  == domain 2  score: 211.5 bits;  conditional E-value: 8.8e-66
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 +e l+ +G+G+fG+V+++++k+t++i+A+K+++k+++ +kke  +++ E kil+++  +p++v l+ +f+++++lylv+++ +ggel+ +l++++ +se
  CDO71318.1 379 FEFLKLIGRGTFGRVFQVRKKDTKRIYAMKVLSKREIIEKKEvAHTIGERKILQRSLeCPFLVGLKFSFQTETDLYLVTDFKSGGELFWHLQKETRFSE 477
                 577899*********************************9999**********98666***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSE.ESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlak.elessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgk 194
                 e+a++++++++ +le+lH+  i++rDlKpeNiL+d +g++ ++DFGl+k  l+ ++ +++f+gt eYlAPEvl +e++ysk vD WslGv+l+e+ +g 
  CDO71318.1 478 ERARFYVAELILALEHLHKYDIVYRDLKPENILLDATGHVALCDFGLSKpDLRADELTNTFCGTTEYLAPEVLlDEHGYSKLVDFWSLGVLLFEMCCGW 576
                 ************************************************944666666****************999*********************** PP

                 -STTTSSHHHHHHHHHHTHHHHHH.HCT...SHH...HHHTTS-HHHHHHH.....HHHT-SSGCCSTT....HHHHHTSGGG CS
     Pkinase 195 ppfsgekgkekvekeldqlekilk.ilg...etkeklpeaseiseeakdll.....kkllkkdpkkRlt....aeellqhpyl 264
                  pf++e++++ +++++    ++ k ++g   ++ +k  +++  s ++ ++      ++ll+++pk+Rl+    a+el++hp++
  CDO71318.1 577 SPFYAEDTQQMYKNICFGKIRFPKgVIGedgKQFVKGVRHTAWSATCPNVTdprphRQLLNRNPKHRLGaqrdAAELKEHPFF 659
                 ****9999999999888844444414446542223333333335555555422222799**********88888999999998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.5e-31   2.2e-28       2     220 ..     380     593 ..     379     602 .. 0.89

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.5e-31
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  e+ k +G+G+fG+V++ + k    +++   a+K+l  +e  +++e ++ + e ki+++  + p +v l      e  l++vt++ +gG+L  +L+k+ 
   CDO71318.1 380 EFLKLIGRGTFGRVFQVRKK----DTKRIYAMKVLskREIIEKKEVAHTIGERKILQRSlECPFLVGLKFSFQTETDLYLVTDFKSGGELFWHLQKE- 472
                  67899***********9988....677777888884245667777899999*****9988*************9*********************98. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGv 193
                   ++++ ++   +++++  ++e+L++ ++v rdl   N+Ll+ + +v ++DfGL++   + de +  ++     +++apE+l +++ +++  D Ws Gv
   CDO71318.1 473 -TRFSEERARFYVAELILALEHLHKYDIVYRDLKPENILLDATGHVALCDFGLSKPDLRADELT--NTFCGTTEYLAPEVLLDEHgYSKLVDFWSLGV 567
                  .999999999999******************************************886666665..44456789******988877************ PP

                  HHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 194 llwEiftlgespypglkneevleklke 220
                  ll+E+++ g sp+   +++++++++  
   CDO71318.1 568 LLFEMCC-GWSPFYAEDTQQMYKNICF 593
                  ******9.************9999854 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5       5.2   7.7e+03      27      28 ..     140     158 ..     106     179 .. 0.52
   2 ?   -1.7   0.1       3.3     5e+03      13      28 ..     215     243 ..     210     271 .. 0.66
   3 !   60.8   0.5     1e-19   1.5e-16       1      46 []     680     776 ..     680     776 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.2
   Pkinase_C  27 m.................p 28 
                 +                  
  CDO71318.1 140 QhskqpgsnnsssssgssA 158
                 1345444444444333440 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
   Pkinase_C  13 eFTeedprdtppddm.............p 28 
                 eF + dp+d+  +++             +
  CDO71318.1 215 EFVSRDPTDETDKEVkgvatnlsrnsssT 243
                 88888888888887777776665553330 PP

  == domain 3  score: 60.8 bits;  conditional E-value: 1e-19
   Pkinase_C   1 vesdeDtsNFDpeFTeedprdtppddm...................................................pagspltssvqenFrGFtY 46 
                 vesde++sNFDpeFT++d+r+ +  +                                                    +++ pltssvqenFrGFtY
  CDO71318.1 680 VESDESVSNFDPEFTTADVREQAGIEEmdldeedpspnwvalsssvngalhtpngplgsdrpgpapvqgieiakkkkrDQDPPLTSSVQENFRGFTY 776
                 8*******************98877778********************************************************************9 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.8e-05     0.087       1      33 [.     184     214 ..     184     228 .. 0.84
   2 !   31.5   0.0   1.1e-10   1.7e-07      42     103 .]     288     345 ..     280     345 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECE CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgk 33 
                 g+++v+ i+A++L+ +  + ss pyv+v+++++
  CDO71318.1 184 GQIHVKLIQARGLNVR--SASSRPYVVVQFEQN 214
                 6899***********9..999*********443 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 1.1e-10
                 SSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHHHEEEEH CS
          C2  42 knslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeeaegwypl 103
                 +   nPvW+++++f+v+  e+++++++V+d++  s++ f+G v+i+ +   +++  ++wy+l
  CDO71318.1 288 SAH-NPVWKHEVSFDVTS-EQSVVTFSVYDRSL-SEHAFLGSVQIKPAL-VHEHTVDQWYKL 345
                 445.9*************.***********999.***********9777.777888888876 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.1e-09   1.6e-06      85     257 ..     362     528 ..     232     539 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.1e-09
  Haspin_kinase  85 sqilelckikkilneadlasllndseklssevyqtkekdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfys 180
                    + ++e  k ++ l + d + l+  +++ ++ v+q+++kd++ ++ +  l    +++ +ke+  +   + k+++ +  + ++l+  k        ++
     CDO71318.1 362 QITFEANKTRRALTPRDFEFLKLIGRGTFGRVFQVRKKDTKRIYAMKVL-SKREIIEKKEVA-HTIGERKILQRS-LECPFLVGLKFSF-----QT 449
                    3345555666666666666666669999999***999888877655555.568888887765.666677788888.6667766655554.....55 PP

  Haspin_kinase 181 eqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyvaE.tkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    e++l+lv  +k +G+   ++ k + +++    f+    iL++    k++   RdL+ +niL+d++++v l+d+ ls+  
     CDO71318.1 450 ETDLYLVTDFKSGGELFWHLqKETRFSEERARFYVAELILALEHlHKYDIVYRDLKPENILLDATGHVALCDFGLSKPD 528
                    9******************95556677777778777777765434699999**********************999755 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.53   7.9e+02      16      49 ..     381     414 ..     368     432 .. 0.82
   2 !   24.1   0.0   1.3e-08   1.9e-05     135     252 ..     470     581 ..     448     601 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.53
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfllps 49 
                    +l+++g ++ vf+v+ + t+   a+kv +  +
   CDO71318.1 381 FLKLIGRGTFGRVFQVRKKDTKRIYAMKVLSKRE 414
                  56899****************9999999987665 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.3e-08
  Kinase-like 135 sethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvv.l.seve..kgfaPpEllgsrggytrknktkmt 228
                  +++ +  e+ ar ++ ++li    +L+++ +v  +++++n+lld  g + l +f+ L +   ++  l ++ +    +  pE+l    g        ++
   CDO71318.1 470 QKETRFSEERARFYV-AELILALEHLHKYDIVYRDLKPENILLDATGHVALCDFG-LSKPDLRADeLtNTFCgtTEYLAPEVLLDEHG--------YS 557
                  444444456688888.7888889*******************************8.44444443303344445445666777777566........56 PP

  Kinase-like 229 hkldaWqlGlviyriwclklPltl 252
                    +d W lG+  + + c   P+  
   CDO71318.1 558 KLVDFWSLGVLLFEMCCGWSPFYA 581
                  689**************9999853 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.8       2.1   3.1e+03     116     156 ..      28      68 ..      18      81 .. 0.52
   2 ?   14.2   0.0   2.1e-05     0.032     146     202 ..     478     531 ..     440     549 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
                 -SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHH CS
         APH 116 adflaqdlellrqlesatarllaselldlleeleeqvlaal 156
                 + ++ +  ++++q +++++++ + ++++ ++++ +++  +l
  CDO71318.1  28 DMMSNDGQAQQEQQPEQQQQQQQQQQQQQQQQAQKNFHHHL 68 
                 44444444555555555553333333333555555544444 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 146 eeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                 e+++  v++ ++al +   +  ++ +Dl+p N+l+d + g+v ++ Df+++++  ++
  CDO71318.1 478 ERARFYVAELILALEH-LHKYDIVYRDLKPENILLD-ATGHV-ALCDFGLSKPDLRA 531
                 3333324444444444.57899**************.66888.9*****99887665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.9e-05     0.058     107     176 ..     467     532 ..     454     537 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
         Kdo 107 dllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlrad 176
                  +l+k  +++ee+ r  + ++  + + lh+ ++  +dl + nill++++    +++l D+  +++ lrad
  CDO71318.1 467 WHLQKETRFSEERARFYVAELILALEHLHKYDIVYRDLKPENILLDATG----HVALCDFGLSKPDLRAD 532
                 567876669999999999999999*************************....******98888777665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.6       2.7   4.1e+03     110     131 ..      40      61 ..      18      76 .. 0.42
   2 ?   12.6   0.0   4.9e-05     0.073     150     199 ..     502     549 ..     468     561 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                     .ECHHGGCCHCCCTHHHHHHHH CS
  Choline_kinase 110 akkekkkkqlklinledlekel 131
                     ++ e++++q +  + ++ ++  
      CDO71318.1  40 QQPEQQQQQQQQQQQQQQQQAQ 61 
                     2222222222222222222222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.9e-05
                     S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCST CS
  Choline_kinase 150 nDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiEwagdyeeeea 199
                      Dl ++Nill + ++++ l DF  + +  r+ +l n f+ ++  y ++e+
      CDO71318.1 502 RDLKPENILL-DATGHVALCDFGLSKPDLRADELTNTFCGTTE-YLAPEV 549
                     6*********.9***************************9876.665555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   3.4       6.7     1e+04     117     135 ..      45      63 ..      34      77 .. 0.45
   2 ?   10.6   0.1   0.00021      0.32      22      57 ..     377     414 ..     369     436 .. 0.77
   3 ?    4.5   0.0     0.016        24     176     204 ..     482     510 ..     466     525 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.7
        FTA2 117 qekklsrkfdaqelevqns 135
                 q+++ +++ ++q++++q++
  CDO71318.1  45 QQQQQQQQQQQQQQQAQKN 63 
                 2222222222222222222 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00021
        FTA2  22 kdiefleyLgkglhsiVlkvkirgk..eYALKlFrfle 57 
                 +d+efl+++g+g+ ++V++v+ ++   +YA+K+  + e
  CDO71318.1 377 RDFEFLKLIGRGTFGRVFQVRKKDTkrIYAMKVLSKRE 414
                 79******************9987556*****987664 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.016
        FTA2 176 sqlpkllrdlkklhklgIvvrDlkeenyi 204
                  ++ +l+  l+ lhk  Iv rDlk+en++
  CDO71318.1 482 FYVAELILALEHLHKYDIVYRDLKPENIL 510
                 567788899******************87 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.2      0.28   4.2e+02     257     291 ..      35      69 ..      15      76 .. 0.51
   2 ?   -2.5   0.0       1.1   1.7e+03     151     176 ..     382     408 ..     320     426 .. 0.72
   3 ?   10.3   0.0   0.00014      0.21     313     393 ..     485     556 ..     473     573 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.28
  Pkinase_fungal 257 kksesskkvekrsvdssvstskrsrlenrvhrrlv 291
                     ++++ +++ ++++ +++++++++++ ++ +h+ l+
      CDO71318.1  35 QAQQEQQPEQQQQQQQQQQQQQQQQAQKNFHHHLL 69 
                     22233333333333333344444444455555554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
  Pkinase_fungal 151 raivgRgT..tcwrarkegergkeyvvK 176
                      +++gRgT  +++++rk++++   y +K
      CDO71318.1 382 LKLIGRGTfgRVFQVRKKDTK-RIYAMK 408
                     467888885558888887766.345555 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00014
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsy 393
                     ++ I +++ L+ k  i+ rD   +Nil+      ++ +  L D+ l k     ++++  ++  GT+e++a evl   eH y
      CDO71318.1 485 AELILALEHLH-KYDIVYRDLKPENILLD-----ATGHVALCDFGLSKPDL--RADELTNTFCGTTEYLAPEVLL-DEHGY 556
                     67799******.****************9.....55666777777766544..677777899************9.56766 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.8     0.011        16     236     308 ..      33     175 ..      14     265 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.011
  Presenilin 236 eeeeeaekkkeeasesskeeeseeesseksaqsse................................................................ 270
                 + ++++e++ e++++++++++++++ +++++   +                                                                
  CDO71318.1  33 DGQAQQEQQPEQQQQQQQQQQQQQQ-QQAQK---Nfhhhllntpqhllspsifggpaspaangsdpsqassqsqlgpltpsatplpaappttslslhap 127
                 2222222222222222211111111.11111...01224555666889999999999999999999999999999****************99999999 PP

  Presenilin 271 ..........seeeseeesseaessaeesseekeseessesseeeeee 308
                           ++++s++  s+++ss++ ss+++++ +s+ +s+++ ++
  CDO71318.1 128 vfnmqqppkpKRQHSKQPGSNNSSSSSGSSAPHTNGRSTPASSSTASS 175
                 998776665544444444444444444444444433333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2509  (0.139941); expected 358.6 (0.02)
Passed bias filter:                     1090  (0.0607954); expected 358.6 (0.02)
Passed Vit filter:                       196  (0.010932); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.27u 0.37s 00:00:01.64 Elapsed: 00:00:00.52
# Mc/sec: 5269.78
//
Query:       CDO71319.1  [L=257]
Description: hypothetical protein BN946_scf184908.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-25   90.2   0.0    2.2e-25   89.7   0.0    1.2  1  Suc_Fer-like  Sucrase/ferredoxin-like
  ------ inclusion threshold ------
      0.066   12.9   0.1       0.58    9.8   0.0    2.1  2  DUF2271       Predicted periplasmic protein (DUF2271)


Domain annotation for each model (and alignments):
>> Suc_Fer-like  Sucrase/ferredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   2.4e-29   2.2e-25       1     119 [.      62     240 ..      62     244 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 2.4e-29
  Suc_Fer-like   1 llgtvkayskhvlvatgksdWpskvedekgslaealkklk.............................................lllsasslpeek 52 
                   +lg+vk+y+++++++tgk+dW+++v+d kg+la+ +++l+                                             ++l+ s+  + +
    CDO71319.1  62 MLGSVKPYARQIVISTGKTDWVREVTDAKGTLAAYVDELSsssrppkdkdspkkpkdaangdsssgpalvhgifdsenlqknkrvTILNGSHR-TVS 157
                   679**********************************98458999999999999999999999999999998888888888888444444444.456 PP

  Suc_Fer-like  53 seeekttvlllPdfklveevt..pssveelvkeflkp..............kvrklpekaliLvCshktrDarCgilapllrk 119
                   ++ +k+tvl++Pd+k+v+ev+  ++ +e+l+++ ++p              +++ +p++++iL+Cshk+rD+rC+i+ap l++
    CDO71319.1 158 DDADKETVLVFPDYKVVTEVArtHDGAEQLWNHAVSPsvrlhavpaeatdvRSWVIPYSCVILLCSHKRRDNRCAIAAPKLEH 240
                   788999************9997677889********99*************9999*************************986 PP

>> DUF2271  Predicted periplasmic protein (DUF2271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.044   3.9e+02      32      74 ..      69     107 ..      65     122 .. 0.67
   2 ?    9.8   0.0   6.4e-05      0.58      71     111 ..     147     186 ..     137     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.044
     DUF2271  32 yvktLavwgegekwlkdlrqWwrksgrklkeeidgvsgaTrap 74 
                 y++++++ + ++ w++++++    +g +l++ +d +s+++r+p
  CDO71319.1  69 YARQIVISTGKTDWVREVTDA---KG-TLAAYVDELSSSSRPP 107
                 666677777777777766541...12.2334678888888776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 6.4e-05
     DUF2271  71 TrapGkyklkvdekddklkklkaGkYklvvEaaredggrel 111
                 T+ +G+++++ d++d++   + +  Yk+v E+ar ++g e 
  CDO71319.1 147 TILNGSHRTVSDDADKETVLVFPD-YKVVTEVARTHDGAEQ 186
                 8889************98888887.**********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1836.39
//
Query:       CDO71320.1  [L=381]
Description: hypothetical protein BN946_scf184908.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.009   16.0   0.1      0.009   16.0   0.1    1.8  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     5e-07     0.009     145     202 ..     117     182 ..      64     203 .. 0.76
   2 ?   -1.8   0.3      0.13   2.3e+03     124     158 ..     262     294 ..     221     362 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-07
                 HHHHHHHHHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEECC CS
         APH 145 leeleeqvlaalaallpg.......elptvllHgDlhpgNllvd.pddgrvtGviDfedaglgppl 202
                  + l ++ l+++ + +p+         ++ l H Dl++ Nl+v  +++ +++  iD++ a+++p  
  CDO71320.1 117 DIPLLRRMLNMCIRIAPAivpadpaLTAPALNHPDLSLTNLIVPnEGPAEIRHSIDWQGATVSPFC 182
                 344444466666666666777788899*****************966666666*********9975 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.13
                 CHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHH CS
         APH 124 ellrqlesatarllaselldlleeleeqvlaalaa 158
                 +l +++ +  a ++a + +  l+ l + ++a++aa
  CDO71320.1 262 NLVPYITRCVAEGPADLRGL-LIGLQQ-LWAEIAA 294
                 44444444443333333333.444444.4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2681.87
//
Query:       CDO71321.1  [L=2656]
Description: hypothetical protein BN946_scf184908.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-61  206.2   0.0    1.5e-40  139.3   0.0    2.3  2  Pkinase        Protein kinase domain
    1.4e-28   99.9   0.0    4.5e-23   81.9   0.0    2.3  2  Pkinase_Tyr    Protein tyrosine kinase
    8.8e-14   51.6   0.0    1.7e-13   50.7   0.0    1.5  1  Response_reg   Response regulator receiver domain
    1.5e-08   34.3   0.1      0.001   18.4   0.0    2.3  2  Kinase-like    Kinase-like
    0.00071   19.6   0.0     0.0026   17.7   0.0    2.1  1  APH            Phosphotransferase enzyme family
     0.0062   15.9   0.0      0.011   15.1   0.0    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0096   15.6   0.0       0.83    9.2   0.0    2.4  2  FTA2           Kinetochore Sim4 complex subunit FTA2
  ------ inclusion threshold ------
      0.012   14.5   0.0      0.029   13.3   0.0    1.5  1  Haspin_kinase  Haspin like kinase domain
      0.089   13.1   0.0       0.27   11.5   0.0    1.9  1  PAS_9          PAS domain
       0.13   11.9   0.0       0.27   10.8   0.0    1.5  1  RIO1           RIO1 family
       0.18   10.9   0.0       0.28   10.2   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7
        0.6   10.2   3.8        3.5    7.8   3.8    2.5  1  UIM            Ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   9.7e-44   1.5e-40       2     147 ..    1115    1262 ..    1114    1277 .. 0.94
   2 !   64.5   0.0   6.3e-21   9.5e-18     154     264 .]    1370    1474 ..    1352    1474 .. 0.84

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 9.7e-44
                  EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase    2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgsls 96  
                  e ++ + +G+fG+V+ a++k+tg+ +A+K++kk ++  k++ ++v +E  il k   +p++ +ly +f++k++lylv+ey++gg+ a l++  gsl+
  CDO71321.1 1115 EIIKPISKGAFGSVFLAKKKATGDYFAIKVLKKADMIAKNQiTNVKAERMILMKQAeSPFVAKLYFTFQSKENLYLVMEYLNGGDCAALIKSLGSLP 1211
                  6788999****************************999999999****988655555**************************************** PP

                  HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE CS
     Pkinase   97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake 147 
                  ee ++++++++  gleylH++gi+HrDlKp+N+Lid++g+lK+tDFGl++ 
  CDO71321.1 1212 EEWTRNYIAEVTLGLEYLHQRGIVHRDLKPDNLLIDQHGHLKLTDFGLSRI 1262
                  ************************************************985 PP

  == domain 2  score: 64.5 bits;  conditional E-value: 6.3e-21
                  BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSG CS
     Pkinase  154 ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdp 249 
                   +++vgt++YlAPE + + ++ +++vD+W+lGvi ye+l+g ppf++e+ ++ +e++l              e  +   e+s+eakd++++l++ dp
  CDO71321.1 1370 EQKVVGTPDYLAPETIlGLRGDDAAVDWWALGVITYEFLYGIPPFHDETPEKVFENILSG----------HIEWHDDYIEVSPEAKDFMQRLMTLDP 1456
                  6899************777888************************77776666666666..........23334455689**************** PP

                  CCSTT...HHHHHTSGGG CS
     Pkinase  250 kkRlt...aeellqhpyl 264 
                  +kRl+   aee+++hp++
  CDO71321.1 1457 TKRLGangAEEVKAHPFF 1474
                  ****988899******98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0     3e-26   4.5e-23       2     151 ..    1115    1261 ..    1114    1271 .. 0.87
   2 !   15.6   0.0   5.1e-06    0.0076     169     249 ..    1377    1459 ..    1365    1464 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 3e-26
                   EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSS..HHHHHHHHHHHH.HHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr    2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeat..eeekeelleeak.imkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrk 94  
                   e+ k + +GafG+V+ ++ k     +    a+K+lk+  +  +++ +++  e   +mk+ + p + kl+    ++e+l++v+ey++gGd    +++
   CDO71321.1 1115 EIIKPISKGAFGSVFLAKKK----ATGDYFAIKVLKKADMiaKNQITNVKAERMiLMKQAESPFVAKLYFTFQSKENLYLVMEYLNGGDCAALIKS 1206
                   578999***********999....777888999997654411444566666655156667*******************************99998 PP

                   TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHE CS
  Pkinase_Tyr   95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLar 151 
                       +l  +++ +++++v  G+eyL+++ +vHrdl   N L++++ + k++DfGL+r
   CDO71321.1 1207 L--GSLPEEWTRNYIAEVTLGLEYLHQRGIVHRDLKPDNLLIDQHGHLKLTDFGLSR 1261
                   7..9***************************************************99 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.1e-06
                   GGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE..S-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr  169 vkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglkneevleklkegkr..lekpekcpeelyelmkkcweedpeeR 249 
                     ++apE++   +    + D W+ Gv+++E +  g  p+++ ++e+v+e++ +g+    +   ++++e +++m++ ++ dp++R
   CDO71321.1 1377 PDYLAPETILGLRgDDAAVDWWALGVITYEFLY-GIPPFHDETPEKVFENILSGHIewHDDYIEVSPEAKDFMQRLMTLDPTKR 1459
                   5799***999988456788***********987.*****************8888723455567899***************99 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.1e-16   1.7e-13       2     111 ..    1749    1859 ..    1748    1860 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.1e-16
                    EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.HHHHESEEEEESSCSSSEHHHHHHHHHHCT...TTSEEEEEESSTSHHHHHHHHHC CS
  Response_reg    2 livdDdplvrellrqlleeegyeevaeaedgkealell.keekvdlillDinmpgmdGlellkeireed...pelpviiltahseeedavealka 92  
                    l+++D+p+ ++++++ll + g+ ++ +++dg+ea+  +    k+d+il+D+ mp +dG  +++ i+ ++    ++p+i+++a+s+ +da+ea  +
    CDO71321.1 1749 LLAEDNPITAKIIETLLIRLGC-RCVVVADGSEAISVAmGDIKFDCILMDLHMPILDGEGAARYIKSTNnknTHTPIIAVSAYSA-SDATEANGL 1841
                    799*******************.99999999999998835667**********************887766688*********98.566666555 PP

                    TESEEEESSG-HHHHHHHH CS
  Response_reg   93 gaddflsKpfdpeeLlkal 111 
                     a  +++Kp+++++L++a+
    CDO71321.1 1842 FA-AYIAKPVQKADLVAAM 1859
                    44.69**********9986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.5e-05     0.038      18      82 ..    1118    1181 ..    1110    1190 .. 0.92
   2 !   18.4   0.0   6.9e-07     0.001     158     194 ..    1227    1262 ..    1202    1286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
  Kinase-like   18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknpeqAkdhlr 82  
                   +++ kg ++ vf++k ++tg+++a+kv    +  +k+++ ++k + + + + ++++p  Ak +  
   CDO71321.1 1118 KPISKGAFGSVFLAKKKATGDYFAIKVLKKADMIAKNQITNVKAERMILMK-QAESPFVAKLYFT 1181
                   6899*********************************************99.99***99997765 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6.9e-07
  Kinase-like  158 anLqakglvhgkftvdnllldekgglmlggftaLvra 194 
                    +L+++g+vh ++++dnll d++g l+l++f+ L r 
   CDO71321.1 1227 EYLHQRGIVHRDLKPDNLLIDQHGHLKLTDFG-LSRI 1262
                   79*****************************7.5555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.8e-06    0.0026     163     199 ..    1229    1263 ..    1119    1289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.8e-06
                  SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH  163 elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199 
                    +++++H+Dl+p+Nll+d ++g++  + Df+++++g
  CDO71321.1 1229 LHQRGIVHRDLKPDNLLID-QHGHL-KLTDFGLSRIG 1263
                  6689***************.55665.69999999998 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.4e-06     0.011      94     169 ..    1190    1260 ..    1174    1274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.4e-06
         Kdo   94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169 
                  l++e l+g  d ++l+++  +l+ee +r+ + +v    + lh++g+ H+dl + n+l++q++    ++ l D+  +
  CDO71321.1 1190 LVMEYLNG-GDCAALIKSLGSLPEEWTRNYIAEVTLGLEYLHQRGIVHRDLKPDNLLIDQHG----HLKLTDFGLS 1260
                  67777766.46777777777799**************************************9....8888888655 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.022        33      18      68 ..    1108    1159 ..    1093    1178 .. 0.68
   2 !    9.2   0.0   0.00056      0.83     142     204 ..    1185    1245 ..    1155    1260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.022
        FTA2   18 fsaekdiefleyLgkglhsiVlkvkir..gkeYALKlFrfleaeeleeaeedl 68  
                  ++  kd+e+++ + kg+ + V+ +k +  g  +A+K+ ++ ++    ++ ++ 
  CDO71321.1 1108 PTSIKDFEIIKPISKGAFGSVFLAKKKatGDYFAIKVLKKADMIAK-NQITNV 1159
                  444489*********999988877655116699****999854333.333333 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00056
        FTA2  142 drsralgeedgkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204 
                  +++ +l +e+ +     a++K   l + +ee + +++ ++   l+ lh+ gIv+rDlk++n++
  CDO71321.1 1185 KENLYLVMEYLNGGDCAALIKS--LGSLPEEWTRNYIAEVTLGLEYLHQRGIVHRDLKPDNLL 1245
                  4556666667777778899999..89999*******************************987 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.029     230     257 ..    1236    1263 ..    1118    1273 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
  Haspin_kinase  230 HRdLhldniLvdknlnvtlidlklsRle 257 
                     HRdL+ dn L+d++++  l d+ lsR+ 
     CDO71321.1 1236 HRDLKPDNLLIDQHGHLKLTDFGLSRIG 1263
                     **************************85 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.27       7      64 ..     519     574 ..     511     623 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
       PAS_9   7 dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerev 64 
                  + d+  +++N+a++ + G++p++  g++++ l+  +p++ + +r+a +++++   r+v
  CDO71321.1 519 LDGDH-FIWINYAWRGVVGTDPQDYFGTRVSKLL--APSDWHVFRDATRRLQEdDSRTV 574
                 33455.99**************************..88888888888888885423333 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.27      82     149 ..    1189    1257 ..    1137    1260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                  EEEEE--EETTEEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1   82 vlvmefigedgvaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149 
                   lvme+++  g  a+ +k + +  ee+++ y   +      +++ g+vH DL   N+l+d+  ++ + D+
  CDO71321.1 1189 YLVMEYLN-GGDCAALIKSLGSlPEEWTRNYIAEVTLGLEYLHQRGIVHRDLKPDNLLIDQHgHLKLTDF 1257
                  59******.7888888999994466666666665555566777****************99878888887 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00019      0.28     146     186 ..    1218    1256 ..    1211    1262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
  Seadorna_VP7  146 iivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186 
                     i      L+ +h  + +++h D +p+nl+ D+ G lkl D
    CDO71321.1 1218 YIAEVTLGLEYLH--QRGIVHRDLKPDNLLIDQHGHLKLTD 1256
                    5544444577788..889*********************99 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.8    0.0023       3.5       2      14 ..    2193    2205 ..    2193    2206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0023
         UIM    2 EdedLqrAlalSl 14  
                  E+e+L++Al+ Sl
  CDO71321.1 2193 EEEQLAQALEASL 2205
                  9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1320  (0.0736237); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.55u 0.34s 00:00:01.89 Elapsed: 00:00:00.57
# Mc/sec: 13962.91
//
Query:       CDO71322.1  [L=202]
Description: hypothetical protein BN946_scf184908.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-13   50.3   0.2    3.7e-13   49.5   0.2    1.4  1  Ribosomal_S18  Ribosomal protein S18


Domain annotation for each model (and alignments):
>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.2   2.1e-17   3.7e-13       9      51 ..     144     186 ..     143     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.1e-17
  Ribosomal_S18   9 dvelLsqFiterGkIlprriTGlcakhQrklakaIkrARhlaL 51 
                    +  lLs+F+t  GkI+ r+ T+l+ k+Qrk+ kaI+rA+++++
     CDO71322.1 144 NSSLLSRFVTTMGKIKGRNETNLTWKNQRKVGKAIRRAKMMGI 186
                    5689**************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1426.94
//
Query:       CDO71323.1  [L=306]
Description: hypothetical protein BN946_scf184908.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-32  112.2   0.4    2.2e-32  111.5   0.4    1.3  1  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    1.5e-14   54.4   0.8    2.9e-14   53.5   0.8    1.5  1  MitMem_reg  Maintenance of mitochondrial structure and functi
    2.1e-07   30.7   0.0    3.8e-07   29.9   0.0    1.4  1  Prok-JAB    Prokaryotic homologs of the JAB domain
  ------ inclusion threshold ------
      0.027   14.6   0.1      0.066   13.3   0.1    1.6  1  DUF5624     Domain of unknown function (DUF5624)


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.4   4.9e-36   2.2e-32       3     116 ..      26     135 ..      24     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 4.9e-36
                 SCEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTT.SEEEEEEEESSSS-SS CS
         JAB   3 vqavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgr.ervvGWYhshpditvw 100
                 ++ +h++sl+llk+l+h + +     evmGl++Ge+ d++tv++ +vfa+p+++t+ +v+  s+d+ +  k+ ++lk++ gr e vvGWYhshp++++w
  CDO71323.1  26 GEVIHISSLALLKMLKHGRAGVPM--EVMGLMLGEFVDEYTVHVIDVFAMPQSGTTVSVE--SVDHVFQAKMVDMLKQT-GRsEMVVGWYHSHPGFGCW 119
                 6789********************..****************************999855..5555666*********9.777**************** PP

                 --HHHHHHHHHHHHHS CS
         JAB 101 lsevdvrtqalyqrmd 116
                 ls+vd++tq++++++d
  CDO71323.1 120 LSSVDINTQQSFEQLD 135
                 ************9987 PP

>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.8   6.4e-18   2.9e-14       1     100 [.     171     306 .]     171     306 .] 0.95

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 6.4e-18
  MitMem_reg   1 Eaeei..gvehllkpsiqdasstlstglnrqyyslki.......................................lqerldlikdYlkkveegelpvn 58 
                 E++++  +++h++kpsiq    +l++glnr+yys++                                        ++++l+l ++Y+k+v+e+ +   
  CDO71323.1 171 EPRQTtsNIGHINKPSIQ----ALIHGLNRHYYSIAVnyrkteleqamlmnlhkrnwtegltlrdfkhhkegnekaIKSMLSLSEAYNKSVQEESTLTP 265
                 9*****************....**********************************************************************9986555 PP

  MitMem_reg  59 he.ilrnlqkllnllP..hleteelekefnvetnDvllvvyLasl 100
                 ++  +r+++k++   P  hle+ ++ek++ +++   l +++La+l
  CDO71323.1 266 EQlKTRHVGKQD---PkrHLEE-QVEKAIGDQVVQNLGTMLLAEL 306
                 666*********...*999998.99***99999999999999976 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   8.5e-11   3.8e-07       4      91 ..      35     127 ..      32     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 8.5e-11
    Prok-JAB   4 vlsalvaharrahpeEtcGlllgkeseseevivvplvnewsn..rfeipdpedslarlkf...earerglevvgiwHSHpggsarPSetDrrd 91 
                 +l ++++h r+  p E  Gl+lg+  ++  v+v+++  ++++   +++++ ++ +++ ++   + + r + vvg +HSHpg +   S+ D+++
  CDO71323.1  35 ALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVHVIDVFAMPQSgtTVSVESVDHVFQAKMVdmlKQTGRSEMVVGWYHSHPGFGCWLSSVDINT 127
                 5789*********************99999999998865555887777555555666555999*****************9987777777665 PP

>> DUF5624  Domain of unknown function (DUF5624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.5e-05     0.066      40     108 ..     208     276 ..     179     287 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHH.-SS-HHHHS--GGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTSS--SHHHHHHHTT..T- CS
     DUF5624  40 ekikavrevn.seelwrdkiaveafqgreekiaalvdYalslteeylervledaskldleslreeyl.teg 108
                 ++++++  +n ++ +w++ ++++ f++++e  ++ +   lsl+e y ++v+e+++ l+ e+l+++++ + +
  CDO71323.1 208 TELEQAMLMNlHKRNWTEGLTLRDFKHHKEGNEKAIKSMLSLSEAYNKSVQEEST-LTPEQLKTRHVgK-Q 276
                 55667777787899************************************99998.*******999942.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2145.61
//
Query:       CDO71324.1  [L=633]
Description: hypothetical protein BN946_scf184908.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1317  (0.0734564); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 3979.75
//
Query:       CDO71325.1  [L=432]
Description: hypothetical protein BN946_scf184908.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-23   82.2   0.0    9.7e-23   80.4   0.0    1.7  1  FMO-like       Flavin-binding monooxygenase-like
    1.2e-18   67.5   0.0    6.3e-18   65.1   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      2e-14   53.6   0.0    2.2e-10   40.3   0.0    2.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.9e-10   40.4   0.0    1.7e-09   37.3   0.0    2.3  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      2e-06   28.3   0.3       0.28   11.8   0.1    3.4  4  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00089   19.3   0.0       0.13   12.3   0.0    3.1  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0018   18.3   0.0      0.034   14.2   0.0    2.5  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0043   16.3   0.0       0.26   10.5   0.0    2.3  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.018   15.3   0.1       0.75   10.1   0.0    2.3  2  TrkA_N         TrkA-N domain
      0.061   13.6   0.1        0.3   11.3   0.0    2.2  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.075   12.1   0.1         24    3.8   0.0    2.9  3  Lycopene_cycl  Lycopene cyclase protein
       0.14   11.2   0.0        7.7    5.5   0.0    2.9  3  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   6.5e-26   9.7e-23      48     330 ..      50     348 ..      33     351 .. 0.79

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 6.5e-26
    FMO-like  48 eGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdf.stsGqwevvtekegkkesavfdavmvc 145
                 +G  + y +++  + k        p p ++p+f +++k+ ++l+++a   dl+ + +     +++k +p +  ++  w+v   +eg + +     ++v 
  CDO71325.1  50 DGWRRRYPTLMLHTIKRHHSLLYQPYPYNWPEFTPRDKMADWLEQYAAIQDLVVWTN-----TELKEKPAYrPETKDWDVSIVREGFQVKLNPAHIVVA 143
                 67777888889999999888888999**************************98754.....34555555427999**********99998888999** PP

    FMO-like 146 tGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavels.rtaeqvllstrsGswvlsr.....vsdsGypwdmll...v 235
                 tG + +p++p    p  e+f+G+++hs+++   + f gk+v+v+G Gns+ d+  +l  r+ae v +  rs + vl+r     +    +p d+ l    
  CDO71325.1 144 TGSLGEPYIPH--IPNSERFQGRVMHSQEFAGGAPFAGKKVVVVGAGNSSIDVCQDLVlRAAESVTMIQRSATCVLTRdyiaeLLRLSFPDDIPLpisD 240
                 **********6..8*****************************************986388999************99443223457899999652112 PP

    FMO-like 236 trfks....llkn.ilptalsnwlvekklnkrfnhenyglkpkkralakepv.......lndelparilaGavkvkssv..keltetsaifedgtveed 320
                  +++s    llk+ +++++ s w  +k+l +++ +    l++  +    + +       ++    + i  G +kvks v  k +te+s i+ dg+   +
  CDO71325.1 241 FKCSSlpvgLLKKfMIANQQSAWEANKELHDKLRKGGLQLNMGPEGEGIHILsmdrgggMDKGGADLIADGRIKVKSGVspKSFTESSLILSDGSE-LP 338
                 344442223566624577889999********99998888765544443333000111133444566888*******996679***********95.58 PP

    FMO-like 321 idvvifatGy 330
                  dv+ifatG+
  CDO71325.1 339 ADVIIFATGF 348
                 9********8 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   4.2e-21   6.3e-18       2     198 ..      18     214 ..      17     224 .. 0.83
   2 ?   -0.6   0.0      0.41   6.2e+02     250     269 ..     332     350 ..     308     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 4.2e-21
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nignsiy.rypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelp 97 
                   +G+G  Gl++a  +k++++   l++E++ ++g+ ++ ryp+ m   +  +++++l  +  +   +e             r++++++l+++a+ ++l 
   CDO71325.1  18 LVGGGQTGLQVAARFKQMNI-PTLVVERNhRLGDGWRrRYPTLMLH-TI-KRHHSLLYQPYPYNWPEFT----------PRDKMADWLEQYAAIQDLV 102
                  59******************.789****999***996369988866.43.3566666665555554444..........4899*************** PP

  Pyr_redox_3  98 iklfeeVes...vkkedegfevetske....tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAlelv. 184
                  + +++e ++     +e +   v+  +e    +++  ++++AtG  + P+ ++ip +e+    v+h++++   +++ag+kvvV+G++nS++D+  +lv 
   CDO71325.1 103 VWTNTELKEkpaYRPETKDWDVSIVREgfqvKLNPAHIVVATGSLGEPYIPHIPNSERfqgRVMHSQEFAGGAPFAGKKVVVVGAGNSSIDVCQDLVl 200
                  *******86222344778888888777555677888*******************996556799*******************************983 PP

  Pyr_redox_3 185 rkgaeVtvvtrgse 198
                  r+  +Vt++ r+++
   CDO71325.1 201 RAAESVTMIQRSAT 214
                  56789****99875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.41
  Pyr_redox_3 250 edgkkvevkddvvlatGykp 269
                  +dg+++ + d +++atG+k+
   CDO71325.1 332 SDGSELPA-DVIIFATGFKS 350
                  44444443.55666666664 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.5e-13   2.2e-10       5     178 ..      18     216 ..      14     227 .. 0.72
   2 !    9.2   0.0   0.00041      0.62     198     241 ..     313     352 ..     304     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.5e-13
                  EE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH..HCHHHHHHHHHHHHH........................HHHHCHHHHCCCCHCCTCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   5 viGgGpAGlaaaltlaqagakvtlvelegtclnggcll..skallgvaedaeias........................evvkklnqgielllgeevv 76 
                   +GgG  Gl++a + +q ++ +++v ++++ l++g     ++ +l++ ++++ ++                          ++ l     + l+ e+ 
   CDO71325.1  18 LVGGGQTGLQVAARFKQMNIPTLVV-ERNHRLGDGWRRryPTLMLHTIKRHHSLLyqpypynwpeftprdkmadwleqyAAIQDLVVWTNTELK-EKP 113
                  69***********************.66666655444333667777777777777899999999998887776666443222222222222222.455 PP

                  EEEESCEEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-E.EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Pyr_redox_2  77 kidpgkkkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgke.vtl 170
                  ++ p+ k+  ++  +eg + k+   ++v+AtGs  +p +++ip  +  +  + r ++s e    +    k++vvvG+G+ ++++++ l   ++e vt+
   CDO71325.1 114 AYRPETKDWDVSIVREGFQVKLNPAHIVVATGSlgEPYIPHIPNSERFQ--G-RVMHSQEFAGGAPFAgKKVVVVGAGNSSIDVCQDLVLRAAEsVTM 208
                  555555555555555566677777********988********994444..4.677777777666665799****************87776666*** PP

                  EESSSSSS CS
                  xxxxxxxx RF
  Pyr_redox_2 171 veardrll 178
                  +++  +++
   CDO71325.1 209 IQRSATCV 216
                  **988776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00041
                  EEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 198 vevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpst 241
                  ++vk g s+k +++ +    ++l+dg+e++ad +++a+G++  +
   CDO71325.1 313 IKVKSGVSPKSFTESS----LILSDGSELPADVIIFATGFKSIR 352
                  7888888888888554....8******************98655 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.9   1.4e+03     196     210 ..      18      32 ..      12      46 .. 0.79
   2 !   37.3   0.0   1.2e-12   1.7e-09     140     227 ..     128     214 ..      66     221 .. 0.83
   3 ?   -0.6   0.0      0.37   5.6e+02     327     341 ..     335     349 ..     330     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.9
  K_oxygenase 196 VvGsGqSaaeifedl 210
                   vG+Gq++ +++   
   CDO71325.1  18 LVGGGQTGLQVAARF 32 
                  699999999887655 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 1.2e-12
  K_oxygenase 140 aegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsea 227
                  +eg + +l+  ++v+++G  +ep+iP++ ++ + + rv+Hs+e++       a+k+++VvG+G S  ++++dl+ r++  +++++ rs+ 
   CDO71325.1 128 REGFQVKLNPAHIVVATGslGEPYIPHIPNSERFQGRVMHSQEFAGGA--PFAGKKVVVVGAGNSSIDVCQDLVLRAA-ESVTMIQRSAT 214
                  56777888899*******988*******9999999**********998..79**********************9987.79999999875 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.37
  K_oxygenase 327 etlevdavvlATGYr 341
                  ++l +d++++ATG++
   CDO71325.1 335 SELPADVIIFATGFK 349
                  56789********97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0002      0.29       5      35 ..      19      49 ..      17      66 .. 0.92
   2 ?   -2.4   0.0       5.1   7.7e+03      41      65 ..      87     111 ..      85     111 .. 0.85
   3 !   11.8   0.1   0.00019      0.28       1      34 [.     181     215 ..     181     228 .. 0.86
   4 ?   -0.5   0.0       1.2   1.8e+03      41      64 ..     264     287 ..     255     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                ECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  5 vGgGyiglElAgalaelgkkVtvversdkll 35
                vGgG +gl +A+ +++++  + vver+ +l 
  CDO71325.1 19 VGGGQTGLQVAARFKQMNIPTLVVERNHRLG 49
                9**************************9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.1
                 HHHHHHHHHHHHTTEEEECSEEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkvee 65 
                 +++++l+++   +   v++nt+++e
  CDO71325.1  87 KMADWLEQYAAIQDLVVWTNTELKE 111
                 5789999999999999999999875 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00019
                 EEEEECSSHHHHHHHHHH.HHTTSEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgal.aelgkkVtvversdkl 34 
                 kvvvvG+G++ +++ + l  + + +Vt+++rs + 
  CDO71325.1 181 KVVVVGAGNSSIDVCQDLvLRAAESVTMIQRSATC 215
                 79****************777889******99765 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHTTEEEECSEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkve 64 
                 ea k+l++kl+k g ++ ++ + e
  CDO71325.1 264 EANKELHDKLRKGGLQLNMGPEGE 287
                 68999*******999987776655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   8.5e-05      0.13       2      80 ..      18      99 ..      17     118 .. 0.85
   2 ?    0.9   0.0      0.26   3.9e+02       1      20 [.     183     202 ..     183     216 .. 0.81
   3 ?    1.8   0.0      0.14   2.1e+02     135     154 ..     328     347 ..     317     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-05
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp..........ptfaeWlrergale 80
                   +vG+G +Gl v++r+ +      ++   ++++++   g  wr++  ++l+l++  ++ sl+ +            +++a+Wl++ +a++
     CDO71325.1 18 LVGGGQTGLQVAARFKQM-----NIPTLVVERNHRL-GDGWRRR-YPTLMLHTIKRHHSLLYQPYpynwpeftprDKMADWLEQYAAIQ 99
                   7*************9888.....59999****8887.788**99.5799***********998779*********99999999988733 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
  NAD_binding_9   1 aivGaGprGlavlerLlara 20 
                    ++vGaG + + v++ L+ ra
     CDO71325.1 183 VVVGAGNSSIDVCQDLVLRA 202
                    69**************9987 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.14
  NAD_binding_9 135 avlladgaslaadaVvLAlG 154
                     ++l+dg++l ad ++ A+G
     CDO71325.1 328 SLILSDGSELPADVIIFATG 347
                    5789***************9 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.3   4.4e+02      14      45 ..      15      45 ..       3      60 .. 0.83
   2 !   14.2   0.0   2.3e-05     0.034      10      46 ..     177     213 ..     168     219 .. 0.91
   3 ?   -3.4   0.0       6.4   9.5e+03      76      87 ..     339     350 ..     338     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.3
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRt 45
                  +  l+G G+++ +va  + + ++   +v+ R+
    CDO71325.1 15 RPFLVGGGQTGLQVAARFKQMNIP-TLVVERN 45
                  5679**************999998.5666776 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.3e-05
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46 
                   +++kkv+++GaG+ +  v++ L+ + +++v+ + R+ 
    CDO71325.1 177 FAGKKVVVVGAGNSSIDVCQDLVLRAAESVTMIQRSA 213
                   6899*******************************97 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.4
                   -SEEEE-SSSSS CS
  Shikimate_DH  76 advvisatasee 87 
                   adv+i at+ ++
    CDO71325.1 339 ADVIIFATGFKS 350
                   79*****98776 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00017      0.26       6      56 ..       2      51 ..       1      55 [. 0.91
   2 ?    3.5   0.1     0.024        36       4      39 ..     166     201 ..     163     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                HHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  6 eryfedllkyaesDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                ++ f d++k +e+   +vG+G +GL  a  + +  ++ ++++er+  +G G
  CDO71325.1  2 QQEFADWVKTVETRPFLVGGGQTGLQVAARFKQM-NIPTLVVERNHRLGDG 51
                56799*********************99999888.9********9998887 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHC CS
        Thi4   4 iveryfedllkyaesDvvivGaGssGLtaayylakk 39 
                 + ++ f     +a   vv+vGaG s +   + l  +
  CDO71325.1 166 MHSQEFAGGAPFAGKKVVVVGAGNSSIDVCQDLVLR 201
                 6666666667799999*********99877766555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0005      0.75       3      35 ..      18      50 ..      17      71 .. 0.81
   2 ?    2.9   0.1     0.085   1.3e+02       1      31 [.     182     213 ..     182     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0005
                EES-SHHHHHHHHHHHHTTEEEEEEESSHHHHH CS
      TrkA_N  3 iiGlGrvGrslaeeLseggkdvvvidkdeerve 35
                ++G G++G ++a ++++ +++ +v++++++  +
  CDO71325.1 18 LVGGGQTGLQVAARFKQMNIPTLVVERNHRLGD 50
                69***************8878*******97655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.085
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkde 31 
                 ++++G+G+    +++ L   + ++v+ i ++ 
  CDO71325.1 182 VVVVGAGNSSIDVCQDLVLrAAESVTMIQRSA 213
                 79***************995567899998765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002       0.3       2      34 ..      19      52 ..      18      72 .. 0.91
   2 ?   -2.5   0.0       4.1   6.1e+03       1       9 [.     184     192 ..     184     212 .. 0.72
   3 ?   -2.6   0.0       4.4   6.6e+03      24      56 ..     363     396 ..     359     400 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                   E--SHHHHHHHHHHHCCTEEEEEE-SSSSSS.GG CS
  NAD_binding_8  2 vGaGlsGlvaAylLakagfdvlllekrdrlG.Gr 34
                   vG+G +Gl  A++ ++ ++  l++e+++rlG G+
     CDO71325.1 19 VGGGQTGLQVAARFKQMNIPTLVVERNHRLGdGW 52
                   9*****************************9665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.1
                    EE--SHHHH CS
  NAD_binding_8   1 IvGaGlsGl 9  
                    +vGaG s+ 
     CDO71325.1 184 VVGAGNSSI 192
                    89**98875 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.4
                    EE-SSSSSSGGG-EECETT.CEECTS---EEETT CS
  NAD_binding_8  24 llekrdrlGGraasyevpg.vrvdygahifhgsg 56 
                    ++++ +  +G    +e+ g ++  y+  +f++++
     CDO71325.1 363 VIDQTSEASGLDEEAEYRGyRPSGYPGLWFATGD 396
                    7788888888777777777566668888888754 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.03        44       4      31 ..      18      43 ..      17      52 .. 0.83
   2 ?    1.2   0.1     0.098   1.5e+02       2      42 ..     182     221 ..     181     224 .. 0.85
   3 ?    3.8   0.0     0.016        24     112     146 ..     319     352 ..     306     364 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.03
  Lycopene_cycl  4 viGaGpAglslAarlteakpglkvvlie 31
                   ++G+G  gl++Aar   +++++  +++e
     CDO71325.1 18 LVGGGQTGLQVAARF--KQMNIPTLVVE 43
                   69************9..77777777776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.098
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpnny 42 
                    vvv+GaG   + + + l   +++ +v++i+ s+  + + +y
     CDO71325.1 182 VVVVGAGNSSIDVCQDL-VLRAAESVTMIQRSATCVLTRDY 221
                    8***************9.66778899999999888777666 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.016
  Lycopene_cycl 112 veeeeageslvvleggrkirarlvvdarglaslkk 146
                    v +++++es+ +l++g +++a +++ a+g +++ +
     CDO71325.1 319 VSPKSFTESSLILSDGSELPADVIIFATG-FKSIR 352
                    6778889**********************.55443 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0051       7.7       5      30 ..      19      44 ..      17      61 .. 0.88
   2 ?    1.4   0.0     0.088   1.3e+02     127     168 ..     123     165 ..      96     176 .. 0.74
   3 ?   -1.0   0.0      0.48   7.2e+02     130     150 ..     328     348 ..     314     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0051
                E-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  5 iGgGhAGceAAlaaarlGakvlLith 30
                +GgG  G+  A+  +++++++l +  
  CDO71325.1 19 VGGGQTGLQVAARFKQMNIPTLVVER 44
                9********************99843 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.088
                 EEEEEEETTS-EEEECEEEE--TT-BT-EE.EETTEEEESSCT CS
        GIDA 127 kvkgvvtedgetikakavviatGtflkgki.higekelsaGrl 168
                  v+ v+   + +++  ++v+atG+  +  i hi ++e  +Gr+
  CDO71325.1 123 DVSIVREGFQVKLNPAHIVVATGSLGEPYIpHIPNSERFQGRV 165
                 5666777778889999********5554332666677777774 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.48
                 EEEETTS-EEEECEEEE--TT CS
        GIDA 130 gvvtedgetikakavviatGt 150
                  ++++dg+++ a++++ atG 
  CDO71325.1 328 SLILSDGSELPADVIIFATGF 348
                 578999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2954.31
//
Query:       CDO71326.1  [L=610]
Description: hypothetical protein BN946_scf184908.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-23   83.6   0.0    5.1e-23   81.3   0.0    1.8  1  FMO-like      Flavin-binding monooxygenase-like
    2.4e-12   46.7   0.0    3.2e-11   43.0   0.0    2.1  2  Pyr_redox_3   Pyridine nucleotide-disulphide oxidoreductase
    1.9e-10   40.5   0.0      3e-06   26.7   0.0    3.0  3  Pyr_redox_2   Pyridine nucleotide-disulphide oxidoreductase
    5.5e-08   32.3   0.0    7.2e-07   28.7   0.0    2.1  2  K_oxygenase   L-lysine 6-monooxygenase (NADPH-requiring)
     0.0029   17.7   0.0     0.0071   16.4   0.0    1.6  1  Shikimate_DH  Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.4e-26   5.1e-23      73     330 ..     258     531 ..     237     538 .. 0.76

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.4e-26
    FMO-like  73 lpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfs.tsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyf 170
                  p ++p++ +++kl ++l+ +a   dl+ +     t ++++ rp +  +sG+we++ ++ +k+ +     +++ tG + ++h+p    pG ++f+G+++
  CDO71326.1 258 YPTNWPEYTPKDKLADWLEHYASIQDLVVW-----TASELQPRPVYNmASGRWEIIVRRGEKEVQLSPAHLILATGTLGEAHMPD--CPGRDAFQGEVL 349
                 4679***********************987.....456777777765269*******99998877777778899**********5..8*********** PP

    FMO-like 171 hsrdykepevfkgkrvlviGlGnsggdiavels.rtaeqvllstrsGswvlsr.........vsdsGypwdm..llvtrfksllknilptal..snwlv 255
                 hs  +   e f+gkrv+v+G Gn++ di  +l  + a+ v +  rs + v+sr          + +  p d+  +l++ +   l++ l+ a   + w +
  CDO71326.1 350 HSEGFHGGERFTGKRVIVVGAGNTSIDICQDLVfNEAQSVTMIQRSSTCVMSRdllssfqrhTWTDDRPLDIsdFLAASWPIGLQKKLAIASqdAMWHM 448
                 ******************************98636788999***********93333222222334445555334555555556666654441145889 PP

    FMO-like 256 ekklnkrfnhenyglkpkkr......alakepvlndelpar.ilaGavkvkssv..keltetsaifedgtveedidvvifatGy 330
                 +k+l +++      l++  +       + +++   d+  a  i  G +kv+s +  +++tet  +f+dg  e + dvvifatGy
  CDO71326.1 449 DKELHAKLRNGGLQLNMGPEgegfylLTLERFGGQDKGGADlIANGSIKVRSGIapERFTETGLVFNDGM-ELSADVVIFATGY 531
                 999999998876666543221122212344555567665541667*******994458**********96.5678********9 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0     9e-15   3.2e-11       6     199 ..     205     398 ..     202     413 .. 0.79
   2 ?    1.2   0.0     0.048   1.7e+02     249     270 ..     514     534 ..     489     552 .. 0.72

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 9e-15
  Pyr_redox_3   6 GPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpiklfe 102
                  G  Gl++a  +k +++   l++E+  +ig+ ++r + + t+ + + ++++l  +  +   +e  p          +++++++l+ +a+ ++l + + +
   CDO71326.1 205 GQTGLQIAARMKAMQV-PALVVERCaRIGDHWRRRYPTLTLHTIK-RHHSLLYQSYPTNWPEYTP----------KDKLADWLEHYASIQDLVVWTAS 290
                  668*************.789****989***998766666666754.6666777766666655555..........78899999999999999998887 PP

  Pyr_redox_3 103 e.....Vesvkkedegfevetske..tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrk.gae 189
                  e     V ++++ + + +v+  ++  +++  ++i+AtG  +  ++++ pG +     v h+  ++  + ++g++v+V+G++n+++D+  +lv +  ++
   CDO71326.1 291 ElqprpVYNMASGRWEIIVRRGEKevQLSPAHLILATGTLGEAHMPDCPGRDAfqgEVLHSEGFHGGERFTGKRVIVVGAGNTSIDICQDLVFNeAQS 388
                  6222225556655555555544334678899********************9654567899999999************************9772567 PP

  Pyr_redox_3 190 Vtvvtrgsei 199
                  Vt++ r+s+ 
   CDO71326.1 389 VTMIQRSSTC 398
                  *****99864 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.048
  Pyr_redox_3 249 tedgkkvevkddvvlatGykpd 270
                  ++dg +++  d v++atGy p 
   CDO71326.1 514 FNDGMELS-ADVVIFATGYLPI 534
                  56666654.4788888888775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.016        56     141     178 ..     197     232 ..     169     251 .. 0.80
   2 !   26.7   0.0   8.3e-10     3e-06      92     178 ..     312     399 ..     263     413 .. 0.75
   3 !    7.1   0.0   0.00076       2.7     197     243 ..     495     537 ..     488     551 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.016
                  -TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                    k  vv+G   +G+ +Aa ++ +++ + +ve++ r+ 
   CDO71326.1 197 ETKPYVVIG--QTGLQIAARMKAMQVPALVVERCARIG 232
                  337789998..9***********************996 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 8.3e-10
                  CTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  92 egdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgke.vtlveardrll 178
                  +++e ++   +l+lAtG   +++ +++pG   +++++ + l+s e+++  ++   kr++vvG+G++++++++ l    ++ vt++++ ++++
   CDO71326.1 312 GEKEVQLSPAHLILATGTlgEAHMPDCPGR--DAFQG-EVLHS-EGFHGGERFtgKRVIVVGAGNTSIDICQDLVFNEAQsVTMIQRSSTCV 399
                  3566677779*******55599999*****..44444.34554.444443333469*****************65444444******99987 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.00076
                  TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 197 GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstel 243
                   ++v+ g  ++++++ g    +v +dg e+ ad v++a+G+ p te 
   CDO71326.1 495 SIKVRSGIAPERFTETG----LVFNDGMELSADVVIFATGYLPITES 537
                  58888888888888666....8*******************998875 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     2e-10   7.2e-07     140     229 ..     311     399 ..     278     414 .. 0.85
   2 ?    1.2   0.0     0.047   1.7e+02     327     340 ..     518     531 ..     512     533 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2e-10
  K_oxygenase 140 aegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseale 229
                  + ++e +l+  +l+l++G  +e+++P++  +   + +v+Hs+ +   +  + ++kr++VvG+G +  +i++dl+ +++ ++++++ rs+   
   CDO71326.1 311 RGEKEVQLSPAHLILATGtlGEAHMPDCPGRDAFQGEVLHSEGFHGGE--RFTGKRVIVVGAGNTSIDICQDLVFNEA-QSVTMIQRSSTCV 399
                  34567899999*******7779******9998889********99887..89*********************99876.7999999998765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.047
  K_oxygenase 327 etlevdavvlATGY 340
                   +l++d+v++ATGY
   CDO71326.1 518 MELSADVVIFATGY 531
                  57899********* PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0071       9      47 ..     359     397 ..     353     425 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtle 47 
                   ++++k+v+++GaG+++  +++ L+ +++++v+ + R+ +
    CDO71326.1 359 RFTGKRVIVVGAGNTSIDICQDLVFNEAQSVTMIQRSST 397
                   6789********************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 3592.50
//
Query:       CDO71327.1  [L=553]
Description: hypothetical protein BN946_scf184908.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  139.3   0.1    1.6e-14   53.5   0.0    3.0  3  Vps52     Vps52 / Sac2 family


Domain annotation for each model (and alignments):
>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   1.8e-18   3.2e-14      70     199 ..      43     171 ..      33     177 .. 0.87
   2 !   29.6   0.0   1.7e-11     3e-07     269     330 ..     206     270 ..     194     284 .. 0.75
   3 !   53.5   0.0   9.1e-19   1.6e-14     319     484 ..     325     497 ..     317     515 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.8e-18
       Vps52  70 aveaklsklvddlivppelidvIiegkvne...esiaekleilnkkksaekdqsvkslkalkDvkklldkLrnkalekireyivqkiktlRkpk.vnvq 164
                   e  ls+l+ dl +pp+l   I+++ v+e   + i+e + +l+ +k  +       +ka +D++++ + Lr +a +k r + ++ +  +++ + +n q
  CDO71327.1  43 RIEKPLSNLLVDLCIPPALAALILDTRVDEqwiPAITEFERKLDTLKVRV------RVKAARDLSEVAEGLRIVAATKLRTFFLSLLEPMKSSMtTNLQ 135
                 567789************************55555555555555555544......478999********************************99*** PP

       Vps52 165 iiqn.kLlkvkkifeFllennrklalelrqaYidTm 199
                  iq  + +k++ ++ Fl+ +  ++a e+++ Y  T 
  CDO71327.1 136 VIQSsVWMKYRPLYVFLQRHAPNVAHEIQRTYAATA 171
                 ****999*************************9986 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 1.7e-11
       Vps52 269 pvlvphiaeknttkyyiEalfrslelalldnatsEYlFlkefFavsgd.qaeei..feqifektl 330
                 +v++  +a+ ++ k+++Eal rs  l+l+dnat EY F++ fFa +   + ++    + i+ +tl
  CDO71327.1 206 SVVMAYMADDKNHKEPLEALIRSALLVLMDNATAEYSFITTFFANEPRpALHSKdsSNSIMSPTL 270
                 356778888888*******************************9753312222233666666665 PP

  == domain 3  score: 53.5 bits;  conditional E-value: 9.1e-19
       Vps52 319 eeifeqifektlslatkyleqlisdcyDaigvllsIriinrlqleaerrrvPvldsylnsvlillWPRFqlvldlnveSlrkadittlve.......kd 410
                 + + +q++++ l+  ++++++ i+    +i +l  Ir+++    e++rr+   l+ y   + + +WP Fq ++  +v+Sl+k +   + +       +d
  CDO71327.1 325 NALWKQVMDPVLDYCQTFIQNAIEPPPPVIPLLTIIRLTEDVVAEVQRRGCGPLETYVFAIRLKMWPVFQKLMSEHVDSLKKFAEGATSGyfrrgttTD 423
                 56799*****************************************************************************99888887899998888 PP

       Vps52 411 trPHeltrryaeflsslvtlsvtvkeeeverllerlqreveslilrlaklfkkkkeqlvfLinNYdlllgvLke 484
                      + rry     s+v l  + +e  +  +l rl++e  +li   +    ++  + + L+  Y+ ll+ L++
  CDO71327.1 424 AAVSSICRRYVAVFNSFVALTDQAEETMIFSNLLRLRQELSKLIVTHTDKQTDPVAKARALSKFYEQLLQGLSN 497
                 88999*************************************************9*******999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3616.75
//
Query:       CDO71328.1  [L=946]
Description: hypothetical protein BN946_scf184908.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6660.60
//
Query:       CDO71329.1  [L=251]
Description: hypothetical protein BN946_scf184908.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-09   36.6   0.0    8.1e-09   35.8   0.0    1.4  1  BRCT_2         BRCT domain, a BRCA1 C-terminus domain
    5.7e-07   29.8   0.0    1.2e-06   28.7   0.0    1.5  1  BRCT           BRCA1 C Terminus (BRCT) domain
    6.2e-05   22.8   0.1    0.00014   21.7   0.0    1.7  2  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC
     0.0003   21.0   0.1    0.00051   20.3   0.1    1.4  1  LIG3_BRCT      DNA ligase 3 BRCT domain
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.026   14.6   0.0    1.4  1  BRCT_3         BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.2e-12   8.1e-09       5      84 ..     140     226 ..     137     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.2e-12
      BRCT_2   5 FeglrFYindaeps.psreklkklIeknGGevvetitsavyiviaesneee........laekrkrrvvspkyIkdCikkgkllpleny 84 
                  ++ r Yin  + + +++ ++k++++  GG++ +t + a ++++++++ +         +++k+  +vv+p++++d+i++gk l+ ++y
  CDO71329.1 140 LRNVRIYING-YLEnTTDIEMKRIVTLAGGQMLHTASGA-THILTSQQLNGaktqklltSKSKHIVHVVRPEWVMDSISAGKRLSEREY 226
                 67999***64.5555999******************877.55555554444699***999999999******************99998 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.5e-10   1.2e-06       5      79 .]     139     215 ..     137     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.5e-10
                 TTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSS..HSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   5 lfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgep..esrslkylealklnipivheewlldci 79 
                 +++++ ++i g l+n+t  e+++++ + GG + +  s  t +l  ++    ++++ ++ + k+ +++v++ew++d+i
  CDO71329.1 139 VLRNVRIYINGYLENTTDIEMKRIVTLAGGQMLHTASGATHILTSQQLngAKTQKLLTSKSKHIVHVVRPEWVMDSI 215
                 789**********************************9999999998886666666888999999**********97 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.8     1e+04      61      70 ..      48      57 ..      46      61 .. 0.72
   2 !   21.7   0.0     4e-08   0.00014      14      99 ..     139     227 ..     126     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.8
                   ---SHHHHHH CS
  RTT107_BRCT_5 61 ilRTeKFLks 70
                   + RTeK L  
     CDO71329.1 48 KKRTEKILAP 57
                   5689988765 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 4e-08
                    XX--EEEEESSS.TT..SSHHH.HHHHHHTTEEE-SGCCT-SEEE-SS--...-SHHHHHHCCCTT.EEE-CHHHHHHHHHTS---SGGGB CS
  RTT107_BRCT_5  14 pevkiravlTgceeevnkedsd.kkkLrklGikivqeakkcntliApkil...RTeKFLksLskap.kilspdfiedvLkkkklldleeyl 99 
                       ++r+ + g+ e+  ++d + k++    G +++++a+  +++ +++ l   +T+K L+s sk+  +++ p+++ d ++ +k l + ey 
     CDO71329.1 139 VLRNVRIYINGYLEN--TTDIEmKRIVTLAGGQMLHTASGATHILTSQQLngaKTQKLLTSKSKHIvHVVRPEWVMDSISAGKRLSEREYS 227
                    556899999999988..5555516667778***************998764559***********99*************99999999986 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.4e-07   0.00051       6      79 ..     140     218 ..     137     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
   LIG3_BRCT   6 Ftgvklfipksvedyk..klrRYfiAydGdlvkeekekeaTHvvvskke.....eskkekeksknakaVtaewiwesIkkr 79 
                   +v+++i+  +e+ +   ++R ++  +G++++   ++ aTH+++s++      ++  + ++++ +++V +ew+ +sI ++
  CDO71329.1 140 LRNVRIYINGYLENTTdiEMKRIVTLAGGQMLH--TASGATHILTSQQLngaktQKLLTSKSKHIVHVVRPEWVMDSISAG 218
                 5789******999988677899999999*9999..7789*******665888433333445566689999********875 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.4e-06     0.026       2      89 ..     139     222 ..     138     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.4e-06
      BRCT_3   2 ilkdlkillvseqkefeel.WseilklaGaavvkkekseaeeislgkldvvvtdsscpeevlkkaeqlkipvvSteWviQsLIegevlk 89 
                 +l++++i++    ++ +++  ++i++laG++++++ +  ++ ++ ++      +   ++++l+  ++  + vv  eWv+ s+  g++l+
  CDO71329.1 139 VLRNVRIYINGYLENTTDIeMKRIVTLAGGQMLHTASGATHILTSQQ-----LNGAKTQKLLTSKSKHIVHVVRPEWVMDSISAGKRLS 222
                 6888999999888866665378999*****99999888877754444.....36668888999999999**************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1877.97
//
Query:       CDO71330.1  [L=195]
Description: hypothetical protein BN946_scf184908.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1519.45
//
Query:       CDO71331.1  [L=705]
Description: hypothetical protein BN946_scf184908.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-103  347.7   0.1      1e-94  318.2   0.0    2.2  2  Ribophorin_I   Ribophorin I
    6.7e-22   77.7   0.8    1.2e-21   76.9   0.8    1.4  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribophorin_I  Ribophorin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.8e-10   1.6e-06       1      59 [.     314     371 ..     314     384 .. 0.93
   2 !  318.2   0.0   1.2e-98     1e-94     151     439 ..     386     694 ..     381     696 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.8e-10
                   -EEEEEEEEEE-SSSS-EEEEEEEEE--SSS----EEEEE-TTTTTSEEEEEEE-SS.. CS
  Ribophorin_I   1 lenenvertidlkksyvketikitvkntgsepvseyylalpkeeaeklslleaslkdkk 59 
                   +en+ ++rt++l +++v++t++++vk   ++ +s y+lal ++e++++s+le++lk+++
    CDO71331.1 314 FENTAIVRTVELGGALVHVTTTYAVKAL-EDGSSVYTLALGEQEHAHTSWLEVKLKGQS 371
                   79**************************.778**********************99875 PP

  == domain 2  score: 318.2 bits;  conditional E-value: 1.2e-98
                   ESSS-EEESS.........CCC-..ETTEEEE---EEE-SS--S-........EEEEEEE-S--EEEEEEEEEEEEETTTTEEEEEEEEEEEE-S-B CS
  Ribophorin_I 151 lpsskiesytkle......epek..sgstltyGpfenvapfslsp........vsvhyennkplltveklerdievShwggniaveeeyelrNdGAk 231
                    p+++i+syt++e      +++   sg+t+tyGpf +++p ++++        vsvhy ++ p+++++kler +e+Shwg n+++e++++l+N+G++
    CDO71331.1 386 SPTPSIHSYTEPEevdfttDSVVtkSGATITYGPFYDIPPSATQDfvdakqkqVSVHYVYDFPVVEITKLERAAEISHWGANLNIENKIDLHNAGPR 482
                   589999****999999987333367*************999977777778888******************************************** PP

                   -TT---HHHHHH.HHHCS.--SS-SSBS-EEEE--SS----EEE-SSSB---EEEETT..........E....EEE--SS-B-TT-EEEEEEEEEEE CS
  Ribophorin_I 232 lkgsFsRldyqkseyeknksnkpssalksleaklpagakdvyytDeiGnvstsrlren.......ekkk.etelelkPRfPlfGGWkysFtigynlp 320
                   lkg+FsRl++q+++y     + ++++l  +++ lp+g++++y++D iGnvsts+lr+        +  + ++ lel+PR+P++G W+ysFt+g++ p
    CDO71331.1 483 LKGHFSRLEHQTQSYF---GRTSPHILPGMNLMLPPGIHSAYFVDLIGNVSTSHLRTVpsvpkgsN-TNsYSLLELRPRYPVLGSWNYSFTLGWDSP 575
                   ************9999...5567****************************************953.4459************************** PP

                   GGGTEEE-T.TTEEEEEEES----SSEEECEEEEEEEE-TT-EEEEEE-SS--SEEEEEEE--TT--S-EEEEEEEE-SEETTTS--EEEEEEE--H CS
  Ribophorin_I 321 lseflrkek.gdkyvlkvpllesikdvvveevelriiLPegAenvkvsspfpvessevslhktyLDttgRpvvtlkkknlvdeeheqkvlvkYdypk 416
                   l+++   ++ ++kyv+ +pll+++  +vv+e+e++iiLPegA+++    p+p  s+++++h tyLDt gRp + lk+++l+d +h+ +++v+Y++p+
    CDO71331.1 576 LEDYAGYDSaTGKYVVGIPLLTPMPTAVVDEAEIKIILPEGATDIGYFPPYPALSEHITKHITYLDTMGRPQINLKYRDLTD-KHTGNIYVTYKVPF 671
                   ******9999************************************************************************.************** PP

                   HHHTCHHHHHHHHHHHHHHHHHH CS
  Ribophorin_I 417 lallrkpllialavfllfllaiv 439
                    a+l+kp+++a+a++ lf++a++
    CDO71331.1 672 RAHLQKPFAVATAFIGLFVIALA 694
                   *******************9876 PP

>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.8   1.3e-25   1.2e-21       3     103 .]     123     225 ..     121     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.3e-25
                    EEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHH.H..HT-GGGEEEEEEEEEEEEEE.EEEEEESTTEEEEEEEEEE CS
  Ribosomal_L22   3 gsnlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeana.elkgldvdslvIeeiqvnkgpkl.krrtyrArGrinpirkspc 96 
                    + n+++s++kl+ + r+I+g++++ A+ ++ fs+k+a+k ++++L  a+++a +lk+l++++lv++e +v+kgp + kr+++++rGr+++  ++++
     CDO71331.1 123 TANFKISHRKLNLLGRQIAGKPIDSAILQMMFSEKRASKRIKSMLVVAKSHAtKLKNLNEQKLVVAESWVTKGPNQlKRFDMKGRGRAGIKVHPHS 218
                    579*************************************************456777***************9887******************* PP

                    EEEEEEE CS
  Ribosomal_L22  97 hievvlk 103
                     ++vvlk
     CDO71331.1 219 RLHVVLK 225
                    *****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5009.33
//
Query:       CDO71332.1  [L=234]
Description: hypothetical protein BN946_scf184908.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-18   64.7   1.7    9.2e-18   64.5   0.1    1.8  2  GILT           Gamma interferon inducible lysosomal thiol red
  ------ inclusion threshold ------
       0.18   11.5   0.0       0.75    9.5   0.0    2.0  1  Thioredoxin_5  Thioredoxin


Domain annotation for each model (and alignments):
>> GILT  Gamma interferon inducible lysosomal thiol reductase (GILT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1     1e-21   9.2e-18       2     104 ..      45     146 ..      44     148 .. 0.84
   2 ?   -1.2   0.1      0.27   2.4e+03      55      66 ..     201     214 ..     178     231 .. 0.68

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1e-21
        GILT   2 vevyyeslCpdsrkfitkqllptlelklkkivdlklvpfGkakeeskeeeleftCqhGeeECegNklqaCalellkdeekalkliaCmes..skek..e 96 
                 v + ++s+Cpd+  + ++ + ++le +++++vdl+l+ +G  + ++   e+ +tC+hG+eEC+gN  + Ca++++  +++++++++C++   ++e+   
  CDO71332.1  45 VVLGVMSRCPDAILC-ETVFDRVLE-RVSSKVDLTLTFIGTINASE--PEFGVTCKHGPEECAGNVQELCAIKHA-PTRRWWSFVQCLNFqgRSEIgkP 138
                 667899******999.888889999.9999**********654444..469************************.5999********98653333557 PP

        GILT  97 eaaekCae 104
                 e+a +Ca+
  CDO71332.1 139 EKALQCAK 146
                 78888997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.27
        GILT  55 tCqhG..eeECegN 66 
                  C h+  ++ECeg 
  CDO71332.1 201 VCIHDetWKECEGG 214
                 45554114577765 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   8.3e-05      0.75     104     165 ..     129     198 ..     117     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 8.3e-05
  Thioredoxin_5 104 flekkniskeellleiaekaglDvee........fkeDlesklakkafqcDlklakemgvtevPtlvffn 165
                    f+ + +i k e +l++a++a+lD+e+        +    +++  ++ +q+ + +++emg+++  t+v+  
     CDO71332.1 129 FQGRSEIGKPEKALQCAKTAELDWENsgvgacagLDGSGKADEGVRLLQQSVTTTQEMGIEKSCTVVING 198
                    55667788889999999999999987333333224444567788999******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1805.97
//
Query:       CDO71333.1  [L=143]
Description: hypothetical protein BN946_scf184908.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-20   72.2   0.7      7e-20   72.1   0.7    1.0  1  Cid2      Caffeine-induced death protein 2
  ------ inclusion threshold ------
      0.075   13.5   0.0       0.12   12.9   0.0    1.3  1  Ntox35    Bacterial toxin 35


Domain annotation for each model (and alignments):
>> Cid2  Caffeine-induced death protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.7   7.8e-24     7e-20       1     104 [.      30     130 ..      30     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 7.8e-24
        Cid2   1 CfstselrdfLrlsRaaiDDtItqrLNalstpsrsagfdpsstalaipkesaCaefleevLfpsWqaRedvieyCakvaesedkedeeaalkeeeeaka 99 
                 C+++s+++d+++++R+ +DDtI++rLN+  ++ r+++++    +  ++ e+aCa++++e L+++W++R+d+++yC +v++++ +e++++ +++  +a+a
  CDO71333.1  30 CHDISVFKDLINQYRK-LDDTINMRLNRTTAQYRDREREGLGGKGDVE-EQACAHVWRE-LVANWSRRKDIVDYCVAVVDQSLEEKRQSLQSAGDDASA 125
                 ****************.*************999977666655554655.55******99.**********************99999999998888887 PP

        Cid2 100 aeras 104
                 +++a+
  CDO71333.1 126 QRKAK 130
                 77665 PP

>> Ntox35  Bacterial toxin 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.12      13      50 ..      81     119 ..      79     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
      Ntox35  13 kHaweklvkknn.wkdvkkivvkvmkegkeeaiksakqk 50 
                  H w++lv + + +kd+ +  v v+++  ee+++s +++
  CDO71333.1  81 AHVWRELVANWSrRKDIVDYCVAVVDQSLEEKRQSLQSA 119
                 5*******99999*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1133.91
//
Query:       CDO71334.1  [L=297]
Description: hypothetical protein BN946_scf184908.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.1   0.0      0.086   12.6   0.0    1.1  1  ERM       Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.8e-06     0.086     144     217 ..     103     186 ..      77     190 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-06
         ERM 144 eseteeeeenseeesaeletde...........veklsleieeeRvtylekskrlqeqLkeLkseleqlkdeekqtelDklheen 217
                 +s+ + +++ ++++   l++               +  +++  + + yl+++++lqe L++L  e e++ ++++  ++D++ ++ 
  CDO71334.1 103 SSSADLNDDATSPSDRLLKHRRisrygsptwmsS-DRGTSSVASGRRYLRREQELQETLRMLGIESEDSDVDSRDVSVDRIARQS 186
                 3333344444444444444443444444444321.122444444558**********************************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1912.55
//
Query:       CDO71335.1  [L=862]
Description: hypothetical protein BN946_scf184908.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-16   58.0  10.0     0.0002   21.3   0.1    6.7  7  Kelch_4         Galactose oxidase, central domain
    8.1e-12   45.1  13.1    0.00065   19.9   0.0    5.8  5  Kelch_3         Galactose oxidase, central domain
    6.5e-09   35.8   0.4       0.11   12.8   0.0    4.7  4  Kelch_6         Kelch motif
    1.8e-05   24.2   1.8          3    7.5   0.0    5.2  5  Kelch_1         Kelch motif
    1.9e-05   24.5   2.0       0.22   11.6   0.1    4.6  4  Kelch_5         Kelch motif
  ------ inclusion threshold ------
        2.9    8.0   6.2        3.2    7.9   0.5    2.3  2  Cytochrom_B561  Eukaryotic cytochrome b561
        7.3    4.7   8.2         10    4.3   8.2    1.1  1  RAP1            Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     8e-08    0.0002       6      48 ..      27      76 ..      24      77 .. 0.81
   2 ?    1.2   0.1      0.15   3.8e+02      20      46 ..     101     129 ..      97     133 .. 0.82
   3 !   17.5   0.1   1.2e-06    0.0031       1      45 [.     144     206 ..     144     209 .. 0.82
   4 ?    2.9   0.0     0.045   1.1e+02       1      24 [.     210     232 ..     210     236 .. 0.88
   5 ?   -0.1   0.0      0.39     1e+03      30      47 ..     310     330 ..     309     333 .. 0.77
   6 !   14.2   0.1   1.3e-05     0.032       8      34 ..     358     384 ..     341     401 .. 0.79
   7 ?   -2.0   0.0       1.5   3.9e+03       2      17 ..     836     851 ..     835     852 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8e-08
     Kelch_4  6 satsipd.gtiylfGGrgedgtllndlylldlstntWrrl......gslP 48
                s+ +++    + +fGG++ +g + + +yl+dl++ +W++       +++P
  CDO71335.1 27 SIGYDDTnHVLLIFGGESQQGFPTSQTYLIDLANLRWTTAqmpsglTNSP 76
                56666553699**************************9877666666666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
     Kelch_4  20 GrgedgtllndlylldlstntWrrl..gs 46 
                 G+++ g +  d++ +d ++  W ++  ++
  CDO71335.1 101 GESSGGNPATDIWEFDYTSQFWAQVnvSP 129
                 7888888999************9996633 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.2e-06
     Kelch_4   1 pRaghsatsi...pdgtiylfGGrgedg.tllndlyll........dlstn...tWrrl...g 45 
                 pR+g++  ++   p++t+y+ GG+ +++  +l+++++l        +l++n   +W+r+   +
  CDO71335.1 144 PRVGFTQSANlttPNNTFYMAGGYDGKTmYPLSEVWRLevtgtlssNLAQNvdaSWSRIkvsS 206
                 6777776666668**************77*********9999999999999888998885554 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.045
     Kelch_4   1 pRaghsatsipdgtiylfGGrged 24 
                 +R++++ t i+   ++ +GG++++
  CDO71335.1 210 ARVSAGGTMIG-QQLVAIGGCTSP 232
                 799999999*6.89999****986 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.39
     Kelch_4  30 dlylldlstntWrrl...gsl 47 
                 ++ +ld+ t+ W r+   g++
  CDO71335.1 310 EIAVLDVGTGAWARVlpaGDP 330
                 5779********999766444 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 1.3e-05
     Kelch_4   8 tsipd.gtiylfGGrgedgtllndlyll 34 
                 t i+  +t++ fGGr + g  l+d+++l
  CDO71335.1 358 TNINAaDTLI-FGGRDASGNYLSDVWVL 384
                 5554415666.****************6 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.5
     Kelch_4   2 Raghsatsipdgtiyl 17 
                 R++ s++ +p+ ++y+
  CDO71335.1 836 RRDVSIVTVPKRRLYV 851
                 9999**********98 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.5e-07   0.00065       2      43 ..      35      74 ..      34      82 .. 0.86
   2 ?    1.2   0.2      0.19     5e+02      13      37 ..     104     136 ..     100     151 .. 0.69
   3 !   13.3   0.1     3e-05     0.077       1      47 [.     158     217 ..     158     219 .. 0.82
   4 !    7.0   0.0    0.0029       7.4      10      46 ..     300     347 ..     292     349 .. 0.81
   5 !    8.0   0.3    0.0014       3.6       5      25 ..     366     385 ..     364     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.5e-07
     Kelch_3  2 drlyifGGlgddgqdrlndvyvydldtntWaeiaslppaRag 43
                + l+ifGG+  + + +++++y++dl++  W+ +a++p++ ++
  CDO71335.1 35 HVLLIFGGES-QQGFPTSQTYLIDLANLRWT-TAQMPSGLTN 74
                679*******.89******************.7888877665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.19
     Kelch_3  13 dgqdrlndvyvydldtntWaei........asl 37 
                 +g+++  d +++d  +  Wa++        +++
  CDO71335.1 104 SGGNPATDIWEFDYTSQFWAQVnvspggpsGRW 136
                 6899999******99999999988744444333 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 3e-05
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydl....dtn.......tWaei..aslppaRaghaat 47 
                 ++++y  GG+++ +  +l++v+++ +    ++n       +W +i  +s  paR+++ +t
  CDO71335.1 158 NNTFYMAGGYDGKTMYPLSEVWRLEVtgtlSSNlaqnvdaSWSRIkvSSDVPARVSAGGT 217
                 799********5555555******77555577799999999999999999******9987 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0029
     Kelch_3  10 lgddgqdrlndvyvydldtntWaei...........aslppaRaghaa 46 
                 ++d+g+ + ++  v+d++t+ Wa++           ++ p +R g+aa
  CDO71335.1 300 WDDQGGLNQGEIAVLDVGTGAWARVlpagdpgpdgkPTYPVPRQGAAA 347
                 6789999999999**********9999866665554445558888876 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0014
     Kelch_3   5 yifGGlgddgqdrlndvyvyd 25 
                 +ifGG+++ ++++l+dv+v+ 
  CDO71335.1 366 LIFGGRDA-SGNYLSDVWVLR 385
                 69*****7.8********984 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.4e-05      0.11      13      44 ..      35      67 ..      24      72 .. 0.83
   2 !    7.7   0.0    0.0018       4.5       7      33 ..     154     181 ..     149     189 .. 0.81
   3 ?   -1.4   0.0       1.3   3.5e+03      18      42 ..     304     323 ..     304     332 .. 0.86
   4 !    9.0   0.0   0.00071       1.8      15      34 ..     366     385 ..     362     399 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
     Kelch_6 13 k.iYifGGytdsspylnkvwvydpetksWeqlp 44
                + + ifGG ++++ ++++ +++d+ + +W++ +
  CDO71335.1 35 HvLLIFGGESQQGFPTSQTYLIDLANLRWTTAQ 67
                4469********999999************976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0018
     Kelch_6   7 lvsvggkiYifGGytds.spylnkvwvy 33 
                 l+++++++Y++GGy++    +l+ vw++
  CDO71335.1 154 LTTPNNTFYMAGGYDGKtMYPLSEVWRL 181
                 689***********99876677777776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
     Kelch_6  18 GGytdsspylnkvwvydpetksWeq 42 
                 GG+++       + v+d+ t+ W +
  CDO71335.1 304 GGLNQ-----GEIAVLDVGTGAWAR 323
                 89999.....9999*******9976 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00071
     Kelch_6  15 YifGGytdsspylnkvwvyd 34 
                  ifGG+++s++yl++vwv++
  CDO71335.1 366 LIFGGRDASGNYLSDVWVLR 385
                 59****************97 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.2   5.1e+02      11      41 ..      34      65 ..      33      67 .. 0.88
   2 ?   -0.4   0.0      0.35     9e+02      22      41 ..     103     124 ..      82     126 .. 0.69
   3 ?    3.2   0.0     0.026        67       9      32 ..     156     181 ..     151     190 .. 0.87
   4 !    6.7   0.2    0.0021       5.4       1      23 [.     210     232 ..     210     245 .. 0.85
   5 !    7.5   0.0    0.0012         3      16      32 ..     367     384 ..     364     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
                TTEEEEEEEBCS.SSBEEEEEEEETTTTEEEE CS
     Kelch_1 11 ggkiYviGGsdg.gnalssvevyDpetntWre 41
                ++ + ++GG +  g ++s  + +D+ +  W+ 
  CDO71335.1 34 NHVLLIFGGESQqGFPTSQTYLIDLANLRWTT 65
                78999****99999999999999999999986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
                 S..SSBEEEEEEEETTTTEEEE CS
     Kelch_1  22 g..gnalssvevyDpetntWre 41 
                 +  gn+  +++ +D +++ W +
  CDO71335.1 103 SsgGNPATDIWEFDYTSQFWAQ 124
                 0458889999999999887765 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.026
                 EETTEEEEEEEBCS..SSBEEEEEEE CS
     Kelch_1   9 vvggkiYviGGsdg..gnalssvevy 32 
                 + ++  Y  GG+dg    +ls v+++
  CDO71335.1 156 TPNNTFYMAGGYDGktMYPLSEVWRL 181
                 67899999******999999999986 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0021
                 BBBSEEEEEETTEEEEEEEBCSS CS
     Kelch_1   1 aragagavvvggkiYviGGsdgg 23 
                 ar  ag + +g ++ +iGG+ ++
  CDO71335.1 210 ARVSAGGTMIGQQLVAIGGCTSP 232
                 588999999***********993 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0012
                 EEEEBCS.SSBEEEEEEE CS
     Kelch_1  16 viGGsdg.gnalssvevy 32 
                 ++GG+d  gn+ls+v+v+
  CDO71335.1 367 IFGGRDAsGNYLSDVWVL 384
                 89**************95 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.15   3.7e+02      10      33 ..      28      52 ..      21      60 .. 0.64
   2 ?   -3.9   0.0         6   1.5e+04      27      38 ..     105     116 ..     101     116 .. 0.77
   3 !    7.2   0.1     0.002       5.2      18      40 ..     162     184 ..     132     186 .. 0.88
   4 !   11.6   0.1   8.4e-05      0.22       2      37 ..     339     384 ..     338     387 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.15
     Kelch_5 10 avtvs..ekiYvyGGkvgrdgsvsdd 33
                + +++  + ++++GG ++ +g +++ 
  CDO71335.1 28 IGYDDtnHVLLIFGGESQ-QGFPTSQ 52
                445543366999***996.5555554 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6
     Kelch_5  27 dgsvsddvyvLd 38 
                 +g++  d++ +d
  CDO71335.1 105 GGNPATDIWEFD 116
                 688899***986 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.002
     Kelch_5  18 YvyGGkvgrdgsvsddvyvLdlp 40 
                 Y+ GG++g ++ + ++v++L ++
  CDO71335.1 162 YMAGGYDGKTMYPLSEVWRLEVT 184
                 9*******99999*******886 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 8.4e-05
     Kelch_5   2 PppRaghcavtvs......ek.....iYvyGGkvgrdgsvsddvyvL 37 
                 P+pR g++a+ +s      ++      +++GG+++ +g++ +dv+vL
  CDO71335.1 339 PVPRQGAAAISWSsalvggTNinaadTLIFGGRDA-SGNYLSDVWVL 384
                 77777777776643444442244444699*****7.**********9 PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.7     0.057   1.4e+02      74     119 ..     518     567 ..     473     585 .. 0.59
   2 ?    7.9   0.5    0.0012       3.2      33      87 ..     678     729 ..     653     732 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.057
                     HHHHHHHHHHHHHHHHHHHHHTSS-...--HHHHHHHHHH.HHHHHHHHH CS
  Cytochrom_B561  74 wlGlvtvilfllqlvlGfvlfllpk...lskklralllpl.HvllGlvif 119
                     ++Gl++  l ++ l+++f+++   +   ++++ +++ +p+ H  +Gl+ f
      CDO71335.1 518 VIGLAAYGLGVAGLATAFTSITSTGaglAKRSASSVNVPTaHSKAGLALF 567
                     44444444444444444444444221112223333333444555444444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0012
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  33 tkkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllql 87 
                     ++ ++H+++++l l+l++++l+a +++  +   a +    +w G+  +il++l +
      CDO71335.1 678 FEGFIHVLFHALLLALSILSLIALWQRAPR---AAFGVFLAWTGVFYIILITLAW 729
                     6678*********************99987...6777778999999999999887 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.2     0.004        10     128     187 ..     422     481 ..     415     500 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.004
        RAP1 128 vvktskpkststeslksssdskskasaksnvksaskyGesssseesatdsskasasvagi 187
                  ++ + p stst+s+ s ++s++ +s  s++  +s     sss   a+d+s    + a+i
  CDO71335.1 422 LTQCAAPISTSTSSQTSGAPSSTTTSHSSGSPGSSDQAPPSSSPSVAYDTSTVHKAAAAI 481
                 557789*************************************99999999877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5778.75
//
Query:       CDO71336.1  [L=1048]
Description: hypothetical protein BN946_scf184908.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.11   11.6   0.6       0.28   10.3   0.6    1.6  1  SPESP1           Sperm equatorial segment protein 1


Domain annotation for each model (and alignments):
>> SPESP1  Sperm equatorial segment protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   1.6e-05      0.28     121     145 ..     550     574 ..     544     623 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.6e-05
      SPESP1 121 iekePepepePelepeveeeeskql 145
                 ie ePepepeP+++pe+ + + +++
  CDO71336.1 550 IEPEPEPEPEPQPQPEISVVQVEET 574
                 5667777777777777754444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1048 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1303  (0.0726756); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 6309.70
//
Query:       CDO71337.1  [L=811]
Description: hypothetical protein BN946_scf184908.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-131  439.9   2.5   1.8e-131  439.6   2.5    1.0  1  HSP90           Hsp90 protein
    8.7e-11   41.8   0.0    1.8e-10   40.7   0.0    1.5  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    6.4e-09   36.3   0.0    1.4e-08   35.2   0.0    1.6  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.032   14.5   0.2        2.2    8.6   0.1    2.6  2  DUF5347         Family of unknown function (DUF5347)
      0.049   14.4   0.0          1   10.1   0.0    2.6  2  COMPASS-Shg1    COMPASS (Complex proteins associated with Set


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.6   2.5    5e-135  1.8e-131       1     500 [.     220     753 ..     220     770 .. 0.88

  Alignments for each domain:
  == domain 1  score: 439.6 bits;  conditional E-value: 5e-135
                 GGGSHHHHHHHHHHCCTT.SSS-EEEEEEEEXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXX...XXXXXXXXXXEEEEEEESXXSX CS
       HSP90   1 eyleekklkelvkkySeF.infpiyllkekeeekeveeeeeeeeeeeee...........eeeeakveeeeeeeee.kkktkkvketvkewellNkqkp 86 
                 ey +++++ +lv+k+S+F  +fpiyl++++ e +  ee+++e++ +ee+           +++ea ve+ ee+++e k++ +    tv+ew +lN+q p
  CDO71337.1 220 EYGDTNTIIDLVNKHSSFsTSFPIYLYTTRMEMVPDEEAQTEAKPAEEKseveeaekpaaDDDEAVVEDAEEKSAEeKREPRLKPITVEEWIQLNSQPP 318
                 7999**************558*******9988776554444443333334567778899777777777766666553555555677999********** PP

                 GGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXS..SSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXX.TTSSXGGGTTXEEEE CS
       HSP90  87 iWlrkpkevteeeYkeFYkslskdsedplavkhfsaeg..evefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdef.edllPkyLsFvkGvv 182
                 iW+r+pk vt+eeY++FY++  kd+e+p a+ hf  +    v+f+ai++vP+r + + +++  ++ +++i+L v+rVfit ++ e+ lPk+ ++vk vv
  CDO71337.1 319 IWMRDPKAVTDEEYETFYQATFKDYEKPHAWYHFAGDSgsGVSFRAIIYVPSRLDDKYWQNPLESVTKDIRLMVKRVFITSDLgEEALPKWANWVKVVV 417
                 **********************************9985236**************************************9887479************* PP

                 EESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXH.HH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHHHSXTT CS
       HSP90 183 dsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklae.ekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYvermkek 280
                 d++dLPLNvsREtlq ++ lk +k  + +++l++l+++ + + e+++k  + +++  klG +ed +nr+kla+L+rf +++   + t+L++Y+e+ k++
  CDO71337.1 418 DAEDLPLNVSRETLQSTQFLKQLKGIITKRLLQLLSRIRDeDPEKWDKVQEVYGNVFKLGAVEDFKNREKLASLVRFATNQR--NSTTLDEYLENKKKG 514
                 **************************************6515678*********************************9985..56************* PP

                 XXEEEEEE..XSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXX...X.XXHHHHHHHHHHHHHHHHHHHHHHH..T CS
       HSP90 281 qksiYyia..geskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakeglel...e.eeeeekkkkeelkkkfeeltkllke..v 371
                 q++i+y+a  g+s +e++ks f+e+l+++gyevl+l dp+De+++++++ +++  +++vak gl++   + + eeek+++  l++k+++l+++l++   
  CDO71337.1 515 QSQIFYLAdmGKSPSELAKSVFIEKLHARGYEVLLLGDPLDEVFITNIRRWKKIPFQDVAKAGLKFgdeDlSPEEEKEEQALLTEKYKPLIEWLRKevR 613
                 *******8779999****************************************************74223447788888889***********99444 PP

                 TTTTESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHH..HHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTX.........HHHHHHHHHH CS
       HSP90 372 lkdkvekvkvserlvdsPcvlvtseygwsanmerimkaqalr..dkskssymsskktleinprhpiikeLkkkveedked.........eeakdlaell 459
                 +k   ++v++s+rlv+s c++v++e g++an+e+++ +   +   +++ ++++++k+leinpr p+i+ L+k++e+ +ed         ee++++a++l
  CDO71337.1 614 VKGAARDVVISNRLVTSSCAIVADESGYTANLEKLISSSHAQqnHRHMWEFAKKQKVLEINPRSPLIEGLLKRIEQLPEDeaehdpeaeEELREVATVL 712
                 56889*****************************99988877555667789999*******************99866554445566668999****** PP

                 HHHHHHHTTXXXSXHHHHHHHHHHHHTTTTHXXSTTTTTTG CS
       HSP90 460 yetallesGfsledpasfakrierllklslgidedeeveee 500
                  + al++sGfs++d+++f +r+ r+l+ slg++e++ ++++
  CDO71337.1 713 VDGALVRSGFSVTDSNDFFTRVDRILRRSLGVSETAPTDTT 753
                 ********************************777666554 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   5.1e-14   1.8e-10       7      98 ..      56     174 ..      49     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5.1e-14
  HATPase_c_3   7 laelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeak..r...ksts......lGkkG 74 
                  l el+ N+ dA  +                   ++i+v+k+++ +g+i i+D G Gm++eel   l +la+s +++   r   +  +      +G +G
   CDO71337.1  56 LRELISNANDALEKLrltsltepqvlsgaenmnITIKVEKDEQGNGRIIIRDTGIGMTPEELSTNLgTLAKSGTSEFlsRaesD--TtgngnlIGAFG 151
                  679999999997777888899999999999999*********99*******************977468888777433313331..1455666***** PP

  HATPase_c_3  75 iGlklAslslgkkltvitkkeges 98 
                  +G + +s+ ++++++v + +  +s
   CDO71337.1 152 LG-FYSSFLVADRVEVASVAAKSS 174
                  **.***************876554 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   3.8e-12   1.4e-08       5     111 ..      55     217 ..      51     218 .. 0.65

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 3.8e-12
                 HHHHHHHHHHHHHHHH............HSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHT.......GTCS.TTCH...HCSTCHT...STSSSH CS
   HATPase_c   5 rLrqiisnlvdNavkf............atkageieveikase.ddlvisveDnGiGipkedlk.......klfe.kfsq...ddstkrg...gggtGl 76 
                 +Lr++isn+ d++ k              +++ +i+++++++e ++ +i ++D+GiG+++e+l        k+++  f +   + +t+ +    g +Gl
  CDO71337.1  55 FLRELISNANDALEKLrltsltepqvlsGAENMNITIKVEKDEqGNGRIIIRDTGIGMTPEELStnlgtlaKSGTsEFLSraeS-DTTGNgnlIGAFGL 152
                 678888888888888799887776654322444566666654479********************9999999999999998641.23222333466666 PP

                 HHHHHHHHHHHTTTEEEE...............................EEET.....TTEEEEEEEEESS CS
   HATPase_c  77 GlsivkklvelmgGeiwv...............................esep.....grGttftftlple 111
                 G++ +  ++++++    v                               +  p     grGt++t++l+ +
  CDO71337.1 153 GFYSSFLVADRVE----VasvaakssnnpnpaqyvfssgadensfeifpD--PrgntlGRGTEITLHLKPD 217
                 7777755555433....222334555556666666666655544544541..1445568899999999875 PP

>> DUF5347  Family of unknown function (DUF5347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0077        27      27      74 ..     444     491 ..     423     499 .. 0.82
   2 ?    8.6   0.1   0.00061       2.2      27      69 ..     487     531 ..     478     541 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0077
     DUF5347  27 dekeleeflkemRdkrdekykenkrvlsaifyLAeiekerhelkfeel 74 
                   k l ++l+ +Rd+  ek+ + + v++ +f L  +e  ++  k+ +l
  CDO71337.1 444 ITKRLLQLLSRIRDEDPEKWDKVQEVYGNVFKLGAVEDFKNREKLASL 491
                 3789999******************************99888887776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00061
     DUF5347  27 dekeleeflkemRdkr..dekykenkrvlsaifyLAeiekerhel 69 
                 + + l +f ++ R+ +  de++++ k+  s ifyLA++ k+  el
  CDO71337.1 487 KLASLVRFATNQRNSTtlDEYLENKKKGQSQIFYLADMGKSPSEL 531
                 45678899999999764478888888999*********9987666 PP

>> COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.23   8.2e+02      50      86 ..     480     511 ..     461     521 .. 0.72
   2 ?   10.1   0.0   0.00029         1      16      88 ..     667     743 ..     664     754 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.23
  COMPASS-Shg1  50 llfknrgkaaaliegeidrsdvykkleegvdrivdqd 86 
                    +fknr+k+a+l++ + ++ ++     +++d++++++
    CDO71337.1 480 EDFKNREKLASLVRFATNQRNS-----TTLDEYLENK 511
                   5799********9999988543.....4566666555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00029
  COMPASS-Shg1  16 Rkeiledfkeseaeqnlrkkveeivesevkkdpsllfknrgkaaaliegeidrsdvykkle.....egvdrivdqdlq 88 
                   ++++le +  s+  + l+k++e++ e+e ++dp+   + r+ a+ l++g+++rs+    +      + vdri++++l 
    CDO71337.1 667 KQKVLEINPRSPLIEGLLKRIEQLPEDEAEHDPEAEEELREVATVLVDGALVRSGFSV-TDsndffTRVDRILRRSLG 743
                   6778888888999999*************************************84332.2234688999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 5257.35
//
Query:       CDO71338.1  [L=667]
Description: hypothetical protein BN946_scf184908.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-24   85.6  17.3    5.8e-24   84.7  17.3    1.4  1  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7  17.3   3.2e-28   5.8e-24      43     406 .]      90     461 ..      82     461 .. 0.81

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 3.2e-28
         SSF  43 llelgalllvlllllllaerlr.nagalTlpdylskRfkgkrilvylsalslllvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGl 140
                 ++ +g ++ + +  ++ a++ +  +ga T+ ++++ Rf+      +l     +l+i + + + l+gga+ ++ + G+n+ +a +ll + +a+Y+++GGl
  CDO71338.1  90 WYGVGGTIQLAFFAIVAAKVKMnANGAHTFLEIVKTRFGTGA--HLLFTFYAFLCILVVCGSLLLGGAATVNALTGMNIVAACFLLPIGIAVYVIFGGL 186
                 66666666666666666665444789**************99..77778888999999***************************************** PP

         SSF 141 lAvvytdtiqavlmlvgalil...liivllevGgleslveklkeaapkv.vdlltpdslkllrdpltalslwlglvl.Gvagl...philvRflaakda 231
                 +A+   d   ++++ v   +    + ++  + G++ +l + l +a  ++ vd ++ +s+ ++++  ++l+++++ +l G  g+   +   +R +a    
  CDO71338.1 187 RATFICDYTHTMILFVIIYVFfanVYGTSPDTGSITALYDLLVQAGKNTpVDGNKDGSYLTMKSN-QGLVFGAATILsGFSGVfcdQGYWQRAIASAPR 284
                 ***98887777776554444400034455678899999999999998888888888887555554.45555555555455555777***********99 PP

         SSF 232 kailkgvlkltivlilvligmisiilfaiklagavp......kavgtevgvsniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDl 324
                 ++ ++ +l ++ ++++    +  ++l a +l+   p      +   ++++ s +a+p  +  +++++ a  +l v++ a+ s +++ l++ ss+f    
  CDO71338.1 285 STTRAYMLGGLSWFAVPWGFASCLGLAARALVTN-PkfptypNPLSPSQTSSGLAAPAAAAVVMGKGGAVAILLVVFMAVTSAVSAELIAVSSVFLYRT 382
                 999999999****999887777788877777764.445566699**********************9888888888899****************6655 PP

         SSF 325 YkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalfwkrvneqGAlagliiG 406
                 Y   r++as++e   v   +i +  v +  +  ++++++ ++ +l  +   +l +av   i l++ w+++++ G +ag+i G
  CDO71338.1 383 Y--YRPQASSQEIVRVSHYFICFWAVWAGCWSTILHKASIDLGWLFYVQGVVLSPAV-VPIALTVTWSKLTRAGVFAGSISG 461
                 5..46777778888888889*******************998888755555555555.55789****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 4076.56
//
Query:       CDO71339.1  [L=741]
Description: hypothetical protein BN946_scf184908.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-40  135.9  20.8    5.8e-11   42.4   0.0    6.4  6  FF          FF domain
    3.5e-09   36.6  21.0    1.2e-08   34.9   3.4    3.5  3  WW          WW domain
    9.6e-05   23.0   9.9       0.68   10.6   2.4    5.3  5  RhoGAP-FF1  p190-A and -B Rho GAPs FF domain
  ------ inclusion threshold ------
        5.8    3.9  11.2        8.7    3.3  11.2    1.2  1  GREB1       Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.3e-14   5.8e-11       1      51 []     263     312 ..     263     312 .. 0.99
   2 !   16.2   6.6   1.9e-06    0.0085       3      51 .]     335     383 ..     333     383 .. 0.97
   3 !   39.8   0.0   8.7e-14   3.9e-10       1      50 [.     397     446 ..     397     447 .. 0.97
   4 !   24.6   0.0   4.6e-09   2.1e-05       4      50 ..     525     571 ..     522     572 .. 0.88
   5 ?    3.3   0.0     0.021        94       1      15 [.     637     651 ..     637     662 .. 0.91
   6 !   15.0   0.4   4.8e-06     0.022      18      51 .]     691     725 ..     678     725 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.3e-14
                 CCHHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   1 kareaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 +a++ Fk+LL+e++ i+p   W++ ++++ +DpRY  l++ s R+e+F++y
  CDO71339.1 263 EAKALFKTLLREKN-INPLHPWDTSLPLFVSDPRYVLLPSVSARREAFDEY 312
                 79************.***********************************9 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHG.TSHHHHHHHHHHH CS
          FF   3 reaFkeLLkehkeitpkstWseikkilenDpRYlal.ldkseReelFedy 51 
                 +++F  LLke    + +++W e ++  ++D R++   +d++eRe+ F +y
  CDO71339.1 335 KQEFERLLKEEV-KSTRTSWTEWRRQWKKDRRFYGWgRDDREREKRFREY 383
                 899*********.**********************************998 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 8.7e-14
                 CCHHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHH CS
          FF   1 kareaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFed 50 
                 ka+++F++LLke    +p   W+eikk l +DpRY a+ ++s ReelF+ 
  CDO71339.1 397 KAEKDFFALLKESGLAKPGAVWKEIKKHLVSDPRYDAVGSSSLREELFNT 446
                 79**********************************************95 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 4.6e-09
                 HHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHG.TSHHHHHHHHHH CS
          FF   4 eaFkeLLkehkeitpkstWseikkilenDpRYlal.ldkseReelFed 50 
                  +F+++L +    +p  tW+ +++ le+DpR+ +  l+  + + lF  
  CDO71339.1 525 LEFRTMLTDAI-RDPQLTWEAVLPQLEKDPRFVNSpLPLNHQLHLFHA 571
                 58*********.********************9988887777777765 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.021
                 CCHHHHHHHHHHCSS CS
          FF   1 kareaFkeLLkehke 15 
                 +ar+aF ++L+e+ +
  CDO71339.1 637 EARAAFDQMLSENSF 651
                 79**********984 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 4.8e-06
                 TTSSHHHHHHHCTTSCCCHHG.TSHHHHHHHHHHH CS
          FF  18 pkstWseikkilenDpRYlal.ldkseReelFedy 51 
                 ++  ++e +k+l+nD+RYl+  + ++ Re+   dy
  CDO71339.1 691 KNVDLKEMIKVLKNDKRYLVFdHVPEQREQWLRDY 725
                 5667899***********************99998 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   3.4   2.6e-12   1.2e-08       1      31 []      15      44 ..      15      44 .. 0.99
   2 !   12.5   1.3   2.7e-05      0.12       4      31 .]      84     110 ..      82     110 .. 0.93
   3 ?   -0.7   1.7      0.35   1.5e+03       4      17 ..     355     367 ..     354     367 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.6e-12
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                LPpGW e+  p+ G++YYyN  Tge++ ++P
  CDO71339.1 15 LPPGWTEHIGPT-GQPYYYNAHTGESTYVRP 44
                8***********.****************99 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.7e-05
                 TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   4 GWeeqwdpdsGrvYYyNheTgetqWekP 31 
                  W  + + + G ++Y ++e +++ W+ P
  CDO71339.1  84 EWLRVITNE-GNTFYTHTERKQSVWTVP 110
                 699999***.***************988 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.35
                 TEEEEE-TTTT-EE CS
          WW   4 GWeeqwdpdsGrvY 17 
                  W+ qw +d  r+Y
  CDO71339.1 355 EWRRQWKKD-RRFY 367
                 6********.9999 PP

>> RhoGAP-FF1  p190-A and -B Rho GAPs FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   2.4   0.00015      0.68       6      47 ..     328     368 ..     323     393 .. 0.76
   2 ?    2.6   0.0     0.051   2.3e+02      10      46 ..     396     432 ..     388     437 .. 0.74
   3 !   10.0   0.0   0.00024       1.1      13      74 ..     523     582 ..     508     587 .. 0.77
   4 ?   -3.4   0.0       3.7   1.7e+04       5      23 ..     630     648 ..     628     657 .. 0.72
   5 ?   -2.5   0.1       1.9   8.5e+03       7      32 ..     696     721 ..     694     729 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  RhoGAP-FF1   6 rkellesatdayekLirkqVtdyralWssvskklskekefee 47 
                  ke+l+  ++++e+L++++V++ r++W++  ++ +k + f  
  CDO71339.1 328 AKETLD-PKQEFERLLKEEVKSTRTSWTEWRRQWKKDRRFYG 368
                 555555.4789***********************99998854 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.051
  RhoGAP-FF1  10 lesatdayekLirkqVtdyralWssvskklskekefe 46 
                 l++ +d +  L ++   +  a+W++++k+l + + ++
  CDO71339.1 396 LKAEKDFFALLKESGLAKPGAVWKEIKKHLVSDPRYD 432
                 44555555555566789999**********9999986 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00024
  RhoGAP-FF1  13 atdayekLirkqVtdyralWssvskklskekefeeyvelfGtekakklFrrhikkLkeehik 74 
                  + ++ ++++  ++d + +W+ v  +l+k + f +       ++  +lF+ hi+ L+ +h++
  CDO71339.1 523 GELEFRTMLTDAIRDPQLTWEAVLPQLEKDPRFVNS--PLPLNHQLHLFHAHINALRFKHLA 582
                 455899*************************99653..334456667888888888888876 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 3.7
  RhoGAP-FF1   5 arkellesatdayekLirk 23 
                  ++e  ++a  a+++++++
  CDO71339.1 630 WQRERWTEARAAFDQMLSE 648
                 5677777888888888765 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.9
  RhoGAP-FF1   7 kellesatdayekLirkqVtdyralW 32 
                 ke++++ +++   L+  +V + r+ W
  CDO71339.1 696 KEMIKVLKNDKRYLVFDHVPEQREQW 721
                 56777777777888888888888888 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  11.2     0.002       8.7    1093    1325 ..     118     364 ..      96     380 .. 0.44

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.002
       GREB1 1093 lesdaeklsstdnedeelqedgerpksnssavqstsdsvaadaaeesskts.........pvkvekseskdavesglsskasakselseasaaaasa 1180
                   + + e++ +  ne ee+++++e+ k +  + ++ + + a+  + ++++++         + kv+ ++ ++a e+g + +++ +se +e ++ aa++
  CDO71339.1  118 EQLEREEALKKANEAEEAVKQAEQVKVKEAERKRHQAQ-AKAGKRKAEEVVpvdeivvskKLKVKDEQDESADEEGDEDEDEDESEEEEWQKEAAAQ 213 
                  23345555666677777766666644443333332222.2222233333332222222222222232223333333333333333322222222222 PP

       GREB1 1181 seeakspkasvtseeeeseeskekekeslsk......etesqlsleaseqkealda.kasskssssssssssassP..ssscslakavkrPpivlls 1268
                    ++           ee ++ +e+ek+++++      e+e+q  + + +  e +d   +++k   ++ +  +  +P    ++sl   v+ P+ vll+
  CDO71339.1  214 LAKE----------AEEERQRQEEEKKRQEEetrklkEAEKQKGTPHINMPERVDLsIDEAKALFKTLLREKNINPlhPWDTSLPLFVSDPRYVLLP 300 
                  2221..........12222222222222222000000222222222222222222222333333344444555556323344555556778888887 PP

       GREB1 1269 .....kavydiltssdssglpksssllPhadvaWasslrPllskeltsteqsl..yyrqWtvpr 1325
                       + ++d    + + +l +s   + +  +     +  ll++e++st  s   + rqW + r
  CDO71339.1  301 svsarREAFDEYCRERARELRESKVKVAKETLDPKQEFERLLKEEVKSTRTSWteWRRQWKKDR 364 
                  3333345677777777777777777777777777777777777777777766422667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3042  (0.169669); expected 358.6 (0.02)
Passed bias filter:                      806  (0.0449551); expected 358.6 (0.02)
Passed Vit filter:                       252  (0.0140554); expected 17.9 (0.001)
Passed Fwd filter:                        90  (0.0050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.56u 0.38s 00:00:01.94 Elapsed: 00:00:00.56
# Mc/sec: 3989.00
//
Query:       CDO71340.1  [L=243]
Description: hypothetical protein BN946_scf184908.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-53  181.2   0.0    3.6e-53  180.9   0.0    1.1  1  Peroxidase_2  Peroxidase, family 2


Domain annotation for each model (and alignments):
>> Peroxidase_2  Peroxidase, family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0     2e-57   3.6e-53       1     186 [.      11     215 ..      11     216 .. 0.93

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 2e-57
  Peroxidase_2   1 heyiapgpndsRspCPgLNaLANHGylprdGknitvselvaalrevynlspdlaallallavl......tfdledlakHnviEhDaSltreDlylg. 90 
                   h y++++p+dsRspCP+LNaLANHGylp+dG+n+t+ +lv+a+revy+ls ++a +la+++v+      +++l+dla Hnv+EhD+Sl+++D+  g 
    CDO71340.1  11 HTYCPATPGDSRSPCPALNALANHGYLPHDGRNLTAPQLVHAIREVYGLSLPFACILAYGGVArcgtkgKLNLHDLAAHNVVEHDGSLVHADAGKGe 107
                   89************************************************************9899999999**********************878 PP

  Peroxidase_2  91 ..ddvkldktlfkellskesseggkltledlaearvrreaesratnpefslsavqalvaygeaalllevf..................ggkesvdke 167
                      ++++d+ l+++ll+  +s+++ ltledl +a+v+r+a+s    p  +l++ q++v+ ge  l+levf                  ++k  v+k+
    CDO71340.1 108 kyAPTNVDPVLLRQLLD--TSSEDYLTLEDLTQAQVNRQASS----P--PLHTLQSVVSKGELDLILEVFgipasvgasqslisneqvEDKLVVPKS 196
                   8655*************..7899******************5....7..89***********************9999998887654325555**** PP

  Peroxidase_2 168 vlrsffgeErlpegwkrra 186
                   +l++++geErlp gw+ ++
    CDO71340.1 197 FLEQWLGEERLPGGWHGPS 215
                   ***************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1674.76
//
Query:       CDO71341.1  [L=486]
Description: hypothetical protein BN946_scf184908.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-28   97.6  24.0    7.2e-27   94.2  24.6    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2  24.6     4e-31   7.2e-27       6     312 ..      34     382 ..      29     437 .. 0.77
   2 ?    0.2   0.9     0.015   2.8e+02     149     175 ..     414     447 ..     372     475 .. 0.54

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 4e-31
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalf 103
                 + ++++r+++g a    l +d ++ + +++++l+++++ ++   lp  ++  +f + r+l + +++++   +l +l+ +++  ll+ r++ G+++g+l+
  CDO71341.1  34 LANFIDRTNIGNARIAGLERDTHLHGNQFNIALAIFYVSYIMVELPSNWVLKKFKPSRWLPFLVAVWGMVtTLSGLI-HNFSGLLAIRFFLGFCEGGLL 131
                 56677777777777779999**********************************75555555555555551144444.9999***************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 p+++ +++ ++++ e  + +g+++a++sl+ ++g ll+ +++   g      Wr++f++ +i++++ ++  +++lp++  + k ++++e+e        
  CDO71341.1 132 PGIMLYLSTLYKRHELQQRVGIFYASASLSGAFGGLLATAIIRMDGvgglagWRWIFILEGIATIVIALSSAIFLPADIASAKFFTEEEREfalhrlrl 230
                 ***************************************8885555668888*****************999*************999999******** PP

       MFS_1 189 .............................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls. 241
                                                              + ++++++ ++ + ++ ++ +w+  ++  ++ +++++++ +lp++ ++ lg+s 
  CDO71341.1 231 sfgaamtaplsepsqgitrvevdaekgaeekvevqtpatdavvvyQEDEKFEWGEVVRGIKDPQ-VWMTSFSYMGIIICLYSFSLFLPTI-VSGLGYSg 327
                 ******************************9**9999999999999999999999666666555.87777777777889999*******6.99999995 PP

       MFS_1 242 ....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf 312
                                          +++  sdrl++r + +l++l +++a  +la++a t+++  ++++l+  G+
  CDO71341.1 328 gtaqL--------------------HTAIASDRLKWRGPFILMFLPITMAGYILAIAAKTNTQRYAAVFLIATGI 382
                 44440....................45555555555555555555555555555555555444444444443333 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.015
       MFS_1 149 g.........Wravfyilaivsllafvlfllllpee 175
                            +++f+++a v++l+ vl    ++e+
  CDO71341.1 414 QapkyirghsITLAFVVMAWVAMLCNVL--YCIWEN 447
                 2222223333445555555555555443..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3294.77
//
Query:       CDO71342.1  [L=1883]
Description: hypothetical protein BN946_scf184908.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  154.7   2.9    1.5e-45  154.7   2.9    2.5  2  RasGAP_C       RasGAP C-terminus
    6.6e-42  143.6   0.0    1.5e-41  142.4   0.0    1.7  1  RasGAP         GTPase-activator protein for Ras-like GTPase
    8.8e-19   65.5  67.2     0.0024   17.5   0.3   13.9 13  IQ             IQ calmodulin-binding motif
    2.4e-13   50.2   0.0    6.4e-13   48.8   0.0    1.8  1  CH             Calponin homology (CH) domain
  ------ inclusion threshold ------
       0.95    9.5   6.9       0.14   12.2   0.9    2.6  2  Sipho_Gp157    Siphovirus Gp157
        3.6    6.1  17.2        8.1    5.0  17.2    1.5  1  Hamartin       Hamartin protein


Domain annotation for each model (and alignments):
>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.2   3.5e+03      43      85 ..    1113    1155 ..    1097    1191 .. 0.71
   2 !  154.7   2.9     5e-49   1.5e-45       2     136 ..    1665    1802 ..    1664    1803 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
    RasGAP_C   43 rlrekrkeElesleetlktLseknnylesqlesYkayienvle 85  
                  +   kr +E ++le+ +++L+ k + + + ++++++ ++  + 
  CDO71342.1 1113 QEVVKRIRENQALEHDVSELDVKIALVVQNVKNFEEILKARRR 1155
                  4445666777777777777777777777777777666665554 PP

  == domain 2  score: 154.7 bits;  conditional E-value: 5e-49
    RasGAP_C    2 velkkkalenlkeLeelgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk...lp 95  
                   e+k++a+  l+eLe+ g+i+r ++yq +ln+Ia d+r+k+r+r +r +E eslee lk+L e+++y+e+q+++Y++y+e+++++++++kgk   lp
  CDO71342.1 1665 REVKAHAIYFLLELEKRGKITRMDGYQGILNAIAGDVRSKNRRRVQRLRERESLEESLKHLAERKKYYEEQIRQYHDYVETAMSTMQRGKGKrrlLP 1761
                  689***************************************************************************************888**** PP

    RasGAP_C   96 fskqyfkkrelkksgklpkfgsykysakqLeekgVLleieg 136 
                  f++qyf++rel+k+gk+p+fgsykysa++ ++kg+Ll+i+ 
  CDO71342.1 1762 FTQQYFHMRELQKAGKMPQFGSYKYSAQRFYDKGILLSIDN 1802
                  **************************************985 PP

>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0     5e-45   1.5e-41       1     207 [.    1250    1455 ..    1250    1456 .. 0.99

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 5e-45
      RasGAP    1 liseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelDPrkiyeelkkkkesktgkksessgkksekeas 97  
                  +++++i+ E++ + +++d++rs + ++ +  +y++  ++  y+++ l+ +++++++ +dl+le+DP  iy+   + +e ++g+ s++++++  ++a+
  CDO71342.1 1250 FFQTAIRDEIAAAGSVEDIIRSHPSFINVAVHYLRP-KQTAYIRETLQSSIRSVIDADDLDLETDPCIIYRVKTDLEEMRSGTPSQRPKDIAFHQAL 1345
                  799********************************9.************************************************************ PP

      RasGAP   98 elekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrr 194 
                  +++ ++ + +++l+ L+ +++e++ +I+ sl+++P+g+R++++     vk kfpda  e    ++++++++r+++Pai++P+ f++v+ +++  +r+
  CDO71342.1 1346 HDPDTRAEYIRHLQVLQWWTEEFVRAITTSLNRMPYGMRYMARETLSAVKSKFPDAPAEACAACVARLVYYRYINPAIITPETFDIVSTTVDIASRK 1442
                  ************************************************************************************************* PP

      RasGAP  195 nLtliaKllqnla 207 
                  nL +i+K+l ++ 
  CDO71342.1 1443 NLAQISKMLTQIT 1455
                  **********996 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.2e-05     0.037       2      19 ..     692     709 ..     691     710 .. 0.92
   2 !    5.7   0.4    0.0051        15       5      21 .]     725     741 ..     721     741 .. 0.87
   3 !    9.5   0.6    0.0003       0.9       4      21 .]     754     771 ..     751     771 .. 0.87
   4 !   11.9   0.2   5.1e-05      0.15       4      21 .]     784     801 ..     782     801 .. 0.94
   5 !    6.3   0.6    0.0033       9.9       2      21 .]     812     831 ..     811     831 .. 0.90
   6 ?    1.7   0.1     0.095   2.8e+02       4      18 ..     846     860 ..     843     862 .. 0.84
   7 !    8.0   0.8   0.00095       2.8       4      21 .]     876     893 ..     873     893 .. 0.89
   8 !   17.5   0.3     8e-07    0.0024       2      20 ..     904     922 ..     903     923 .. 0.90
   9 !   10.4   0.1   0.00015      0.45       3      20 ..     935     952 ..     933     953 .. 0.89
  10 ?    1.4   1.3      0.12   3.6e+02       7      21 .]     971     985 ..     970     985 .. 0.91
  11 !    7.9   0.0   0.00097       2.9       5      18 ..     999    1012 ..     998    1014 .. 0.86
  12 !    9.5   1.1    0.0003      0.91       3      21 .]    1027    1045 ..    1025    1045 .. 0.91
  13 ?    3.0   0.1     0.038   1.1e+02       3      20 ..    1057    1074 ..    1055    1075 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 ++++k+Qaa R++l+Rk+
  CDO71342.1 692 ESIVKMQAAARAFLVRKA 709
                 79**************95 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHHHHHH CS
          IQ   5 ikIQaawRGylaRkryk 21 
                  k+Qa  R+ l+R+r k
  CDO71342.1 725 PKLQAIARAALVRRRVK 741
                 59************986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                 ++ +Qa+ RG l+R++ k
  CDO71342.1 754 VLALQAHARGLLVRRQWK 771
                 5679***********976 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                 ++k Qa+ RG l+R++++
  CDO71342.1 784 IVKVQAQSRGVLQRRKFQ 801
                 89**************96 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkryk 21 
                  +++k+Q++ R+  a + +k
  CDO71342.1 812 MSVVKLQSVARARIAQRSHK 831
                 689************99876 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.095
                 HHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRk 18 
                 ++  Qa+ RG  +R 
  CDO71342.1 846 VVAVQAHARGAIVRA 860
                 6789******99996 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.00095
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                 ++++Qa++R+ l R+r +
  CDO71342.1 876 VVRLQAQVRAVLIRRRVR 893
                 799************976 PP

  == domain 8  score: 17.5 bits;  conditional E-value: 8e-07
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 +++++IQaa+R ylaRkr+
  CDO71342.1 904 DIVVRIQAAVRTYLARKRL 922
                 689**************96 PP

  == domain 9  score: 10.4 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 a ik+Qa+ R+ laR+++
  CDO71342.1 935 ALIKLQAVARARLARQQH 952
                 569*************97 PP

  == domain 10  score: 1.4 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkryk 21 
                 +Qa+ R+ laR r++
  CDO71342.1 971 FQARARAALARSRHQ 985
                 6**********9975 PP

  == domain 11  score: 7.9 bits;  conditional E-value: 0.00097
                  HHHHHHHHHHHHHH CS
          IQ    5 ikIQaawRGylaRk 18  
                  + +Qa  RGyl+R 
  CDO71342.1  999 VGLQATARGYLVRL 1012
                  679**********6 PP

  == domain 12  score: 9.5 bits;  conditional E-value: 0.0003
                  HHHHHHHHHHHHHHHHHHH CS
          IQ    3 aaikIQaawRGylaRkryk 21  
                   a+ +Qa  RG l+R++++
  CDO71342.1 1027 HATYLQALLRGALQRRKFR 1045
                  5999*************98 PP

  == domain 13  score: 3.0 bits;  conditional E-value: 0.038
                  HHHHHHHHHHHHHHHHHH CS
          IQ    3 aaikIQaawRGylaRkry 20  
                   ++ IQ+ +R+  +R +y
  CDO71342.1 1057 KIVQIQSLFRAKETREQY 1074
                  6899******98777666 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   2.1e-16   6.4e-13       6     106 ..     514     616 ..     509     619 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.1e-16
                 HHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT...HHHHHHHHHHHHHHHHHHTTCHTTSS.-HHHHHTTSHH.HHHHH CS
          CH   6 ellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks...efkkleNinlaldvaekklgvpkvli.eaedlvegknk.svltl 99 
                 e+ +Wi+ +l+e+ p + v ++ee+lr+Gv+L+kL+  ++ ++  ++++       f++ +Nin ++ +++  +g+p+  + e +dl+e+kn  +v+ +
  CDO71342.1 514 EAKEWIEGCLGEKLPFD-VVEMEEQLRNGVILAKLVRVFQGEA-AVRRIYEApklDFRHSDNINHFFVFVR-YVGLPEGFVfELTDLYEKKNLpKVIYC 609
                 6789********97766.79*******************9888.44444333679****************.********9****************** PP

                 HHHHHHH CS
          CH 100 laqLfra 106
                 +++L++ 
  CDO71342.1 610 IHALSHL 616
                 ****986 PP

>> Sipho_Gp157  Siphovirus Gp157
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.81   2.4e+03      33      64 ..    1123    1154 ..    1088    1156 .. 0.61
   2 ?   12.2   0.9   4.7e-05      0.14      56      99 ..    1714    1757 ..    1675    1780 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.81
  Sipho_Gp157   33 esleeeieeKaeniakviknleaeaeaikeee 64  
                   ++le ++ e   +ia+v++n+++ +e +k++ 
   CDO71342.1 1123 QALEHDVSELDVKIALVVQNVKNFEEILKARR 1154
                   56666666666677888888888888888765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.7e-05
  Sipho_Gp157   56 eaeaikeeekrLaerkkslenkaenLKeyleeameaaglkkikt 99  
                   e e ++e  k Laerkk  e+++ +  +y+e+am++++  k k 
   CDO71342.1 1714 ERESLEESLKHLAERKKYYEEQIRQYHDYVETAMSTMQRGKGKR 1757
                   56778888899************************988777555 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  17.2    0.0027       8.1     262     446 ..      98     283 ..      89     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0027
    Hamartin 262 easceegyssv.aadptsspytdlqsstg...sststpistkrlqlsslsgtspavlsvessrskddeislWSPssvcgmttppsspgivptte.lels 355
                   ++ee ++s+ +a+++s p  d + s++   s  + +++t++   +s+ +   + +s++ s+  +d +s   Ps   +m+ p   ++++p+t+ +   
  CDO71342.1  98 RGKWEERVRSAeNAQTESRPLADRTRSESatsSPVRPAFDTPS-RTRSIDRYAFPPASPSKSDIGQDDYSPTRPSKRYTMPAPIIASPLSPNTTgVT-V 194
                 6789999998844444445555554444300033444555665.4555555555555555555444445555666999*************988554.4 PP

    Hamartin 356 ssasllsskvsstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeksesskpdlskqeevenekeleeslkskssv 446
                 +s s +ss+++ ++ +     p +TP++ss+ +  ++ +s+v+ + ++s  +s++ r++++ es +p+ + +  v++e++  + + s++sv
  CDO71342.1 195 ESDSPPSSSFTTPTPQ-RIHLPVSTPLQSSSIAAVRNLSSYVQGSDSPSYSPSTRLRRSNTLESMNPSSTGSS-VSSENSARSIQTSQTSV 283
                 4444444444444443.6789**********9999999*****99999999**********999999654443.34444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.48
# Mc/sec: 11733.96
//
Query:       CDO71343.1  [L=857]
Description: hypothetical protein BN946_scf184908.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-91  306.9   0.9    3.4e-91  305.9   0.9    1.5  1  GCP_C_terminal  Gamma tubulin complex component C-terminal
    2.1e-68  231.2   0.0    2.1e-62  211.5   0.0    3.4  2  GCP_N_terminal  Gamma tubulin complex component N-terminal


Domain annotation for each model (and alignments):
>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.9   0.9   3.8e-95   3.4e-91       1     309 []     502     847 ..     502     847 .. 0.96

  Alignments for each domain:
  == domain 1  score: 305.9 bits;  conditional E-value: 3.8e-95
  GCP_C_terminal   1 LlehLkllkrylLlgqgdFisrLldalfdelwkpasselrlaLtslLeeairssnaqqsdelkddlsfaldlpevleeldakldpdsle..gldf 93 
                     Ll+hL +lk+ylLlg gdF+++L+d+l ++l++pa++++r++Lt++Le+a+rssnaq+            d+p+vl++lda++ ++s++  g+d+
      CDO71343.1 502 LLDHLLALKHYLLLGYGDFADQLMDTLGPSLSRPANALYRHNLTATLESALRSSNAQS------------DPPDVLRRLDARMLEYSHGeiGWDV 584
                     89*****************************************************999............*************999*999***** PP

  GCP_C_terminal  94 ltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslwkrrkatgarsvl...........................lkrarllrqeml 161
                     +tLeYkv++p+++v++p+a++kY+++F++L++vkr+e++ls+ w +r a ga++ l                           ++++rl+++em+
      CDO71343.1 585 FTLEYKVDAPIDTVLDPTAMMKYLKLFNHLWKVKRIESTLSAGW-MRIAGGAKTFLrvpgilfstrlpgyilahrfhleleydWHQIRLVMAEMI 678
                     *****************************************99*.99999999888999************************************ PP

  GCP_C_terminal 162 hfvsqlqyYvldeviessWreleeklkkeatdldelieaHeafLdsilkkclLrskk.....kllklleeilelileFakvldgly.lsvselt. 249
                     hf++q+++Y++ evie+sW++l + ++k+++dld+lie H+a+Ld+++kk+lL s+k     +ll++++++++++l+F++++d+ly ++ +e++ 
      CDO71343.1 679 HFIRQVEAYCHLEVIECSWQDLSHFVQKKEGDLDALIENHRAYLDRMVKKVLLLSPKagreeNLLNQVRDVFTMVLNFREATDDLYnYCLTESAr 773
                     **************************999999************************778899******************************99* PP

  GCP_C_terminal 250 ...................aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqeededlrqLllrLdfnefY 309
                                        ++  ++e+l++ + +r++e+ ++F+++v+ ++++l a+  ++ d d+r+L++rL f++fY
      CDO71343.1 774 rdaekdaargvytrmetaeDRRYTAESLPD-ILSRVREYGAAFSDRVQAIVQAL-AS--HP-DLDCRFLGIRLSFSDFY 847
                     **************9998755556667777.99*********************.54..78.9***************9 PP

>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.0   2.4e-66   2.1e-62       1     236 [.     175     463 ..     175     468 .. 0.88
   2 !   14.7   0.0     2e-06     0.018     267     306 .]     469     499 ..     464     499 .. 0.87

  Alignments for each domain:
  == domain 1  score: 211.5 bits;  conditional E-value: 2.4e-66
  GCP_N_terminal   1 lrdllylLqGisgklirfdekdd.....................ervvkdvrl...pgl.lppslrslverllelgtlyrrlrkfveev.srses 69 
                     lrd lylLqGisgk+++f+ ++d                        +++  l   +++ +p+++r+l++rl+e+g+ly+r+++fv+e+ +r  +
      CDO71343.1 175 LRDTLYLLQGISGKYVQFSVSKDaeqnkelvftedpvrdpflrpI--STN--LdhaQRYfVPAPMRALIHRLAEVGHLYQRVDAFVREReGRVGV 265
                     89***************9776666777888888777777766331..222..133433358*************************9988999** PP

  GCP_N_terminal  70 glvlqalaaaldeelteyyrliaqlEsqlledsesi......ltLlrlevwlqetllllrvLanlveevekanlkggallsllheaaqhgdpkvr 158
                     g+++q+l+++l+++lt+yyrlia+lEsq++ ++++        ++    ++ +et l+l+ L   +e+ +  +++ggal++l+h +a++gdp++r
      CDO71343.1 266 GMIEQSLCHHLQTQLTAYYRLIAVLESQMSIAPHTDesgkenNSIED-RTREEETGLTLKRLDVWIEDWR-LHAHGGALVNLIHGYAENGDPFIR 358
                     *********************************9999**77633333.2333566777777888888777.5778******************** PP

  GCP_N_terminal 159 kllsellervsrpflemlekWileGelsDpynEfFveenesvakeklked...........................dseklweekYtlrkemlP 226
                     k++++lle+vs+pf+++l+kW+++Gel+Dp++EfFv+ +++ a+ +++++                            + +lwe+kY++rkemlP
      CDO71343.1 359 KFTNQLLEEVSKPFFATLHKWLFSGELYDPFSEFFVAVDPELAHLQYMQPslqgvgqlasdggftggdvedaseehaGGLQLWEQKYRFRKEMLP 453
                     ***********************************************999***************************99**************** PP

  GCP_N_terminal 227 sflseelaek 236
                      f+ e++++k
      CDO71343.1 454 AFVGETFGRK 463
                     ******9998 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2e-06
  GCP_N_terminal 267 leyiddleelssslslsleelidsayklaskrllelLfke 306
                     l+y+d +         +le++id+ay++as+rl++++f++
      CDO71343.1 469 LKYSD-IV--------GLERSIDTAYQIASQRLFDVFFDK 499
                     56666.55........8*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5753.38
//
Query:       CDO71344.1  [L=1032]
Description: hypothetical protein BN946_scf184908.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-47  160.0   2.2    2.6e-46  157.4   0.8    2.5  2  E1-E2_ATPase  E1-E2 ATPase
    4.6e-32  112.0   0.4    1.2e-31  110.7   0.4    1.8  1  Hydrolase     haloacid dehalogenase-like hydrolase
    1.2e-12   48.1   0.2    1.2e-09   38.5   0.0    3.2  3  HMA           Heavy-metal-associated domain
    0.00041   20.2   0.0    0.00085   19.1   0.0    1.5  1  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.37   11.0   1.5        1.1    9.5   1.2    1.9  1  E7            E7 protein, Early protein
        6.2    6.8  11.3        1.2    9.1   0.7    3.3  3  DUF485        Protein of unknown function, DUF485
        6.8    7.1   7.1        0.6   10.5   0.7    2.6  3  DUF4149       Domain of unknown function (DUF4149)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12     3e+02     146     172 ..     255     281 ..     231     289 .. 0.78
   2 !  157.4   0.8     1e-49   2.6e-46      10     181 .]     479     667 ..     470     667 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
                   HHHHHHHHHHHHHS-TTHHHHHHHHHH CS
  E1-E2_ATPase 146 eallralallvaaiPcaLplavplala 172
                   + llr+++ +v+aiP   + +v  +l+
    CDO71344.1 255 NLLLRFVSSAVVAIPTFVIGVVYASLV 281
                   7899***********999988887776 PP

  == domain 2  score: 157.4 bits;  conditional E-value: 1e-49
                   E-TT.S-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--- CS
  E1-E2_ATPase  10 irdg.teeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveea 104
                   ++dg t+++ida+ l++GD+v + +g + paDg +v g +  +des+LTGEs+ v+k+ gd+vf Gt+ ++g + ++V ++g +t+l++i+++v+e 
    CDO71344.1 479 VKDGaTVVKIDAELLEVGDLVRVLHGASPPADGTVVAGDCgAFDESSLTGESRLVKKSVGDKVFVGTISKAGVVDIRVDKIGGQTMLDHIVQVVREG 575
                   445548999**************************************************************************************** PP

                   -----HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...............HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase 105 kskktplqkkldklgkvlvpvvlliallvflialllgksla...............eallralallvaaiPcaLplavplalalgarrlakk 181
                   + +++p+++ +d +++++vpvv+l+a ++++i+l+lg + a                +l +a+a++v+a+Pc+++la+p+al++g + +a++
    CDO71344.1 576 QTRRAPIERVADIITGYFVPVVTLLASVTWIIWLSLGFGGAlppdyldievggwavWSLEFAIAVFVVACPCGIALAAPTALLVGSGLAAQH 667
                   ***********************************88888889999999999999455555*************************999875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.4   4.7e-35   1.2e-31       2     210 .]     685     927 ..     684     927 .. 0.85

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 4.7e-35
                 SEEEEESBTTTBCHH.HHHHHHHHHH............CHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHH..HHHHHETTTE..........HHHHTHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxx..........xxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge.psvedvivsa............alalaaaletgsehpigkalvaaakar.sgal..tgfatfigrg..........ayaigkp 74 
                 +++vfDk+GTLt+g  p v+dv                 l +a  letgs hp++ a+ +++ +  + ++  +++++ +grg          ++a g++
  CDO71344.1 685 DLIVFDKTGTLTEGGnPKVTDVQLFSdqstdrrlssqaVLGMAMELETGSSHPLATAIRRYCTDSgGTPCsaASVHETPGRGirgsfnslgyEVALGNE 783
                 78**********8888*****8777777888877777778888888888****************7444466999999********************* PP

                 HHHHHH..HCHHHHHHHHHHHHHHCHHHHHH..............TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TT CS
                 xxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
   Hydrolase  75 ewltal..dippdlgaaigsaqsqgrtvall..............qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanq.lG 156
                  w++a+   +  ++ a   ++ ++g++va+l                 +la f+iadp  v+pea+e+v +L+a+g+ +++++gdn  ta+++a+  + 
  CDO71344.1 784 AWIEAHevQVDGKVSALLNTWKAEGKSVAILaawptdlglanspaHCAVLAAFAIADP--VRPEAKEVVMQLQAQGLGTWMISGDNVMTAKAVASSkVQ 880
                 *******************************88888888887776669**********..*******************************99999888 PP

                 GGGESEEEEHHCESSTTTSHHHHHHHHHHHT..STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 157 ddyfdaviasdietvakpspegkvaaireLq..gkpeevamVGDgvnDaaalaaAg 210
                             ++ + p    + ++  + +   +   vamVGDg+nDa+al  A+
  CDO71344.1 881 --------WLQQVGMKRPA-GSFTRIFGRRGvnSERCVVAMVGDGINDAPALTVAD 927
                 ........33333344443.3355555555522556679*************9887 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   4.7e-13   1.2e-09       2      62 .]      75     134 ..      74     134 .. 0.93
   2 !    6.2   0.0    0.0056        14       2      25 ..     160     183 ..     159     224 .. 0.65
   3 ?   -4.0   0.0         7   1.8e+04      35      46 ..     788     799 ..     787     802 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 4.7e-13
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 ++v+gm+Ca+C ++++  Ls +pgV++++v+l +k++t ++   + ++ ++ eai++agy+
  CDO71344.1  75 LSVDGMTCASCINTITALLSDIPGVSNIVVSLLSKSATAVVHSRD-LVPQLTEAIDDAGYE 134
                 679*********************************998887777.679**********97 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0056
         HMA   2 vrvsgmhCagCaakvekvLselpg 25 
                 +rv+gm  + C  kv  +L+++ +
  CDO71344.1 160 FRVEGMSTHDCPEKVLTALEAFGS 183
                 9******************98754 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 7
         HMA  35 tktvtVegdaes 46 
                 +++v+V+g++++
  CDO71344.1 788 AHEVQVDGKVSA 799
                 789999999876 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.3e-07   0.00085     206     247 ..     910     951 ..     896     956 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.3e-07
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247
                  v+ +GDg ND + L++a++g+A+g++s+ +++ A+++  s n
   CDO71344.1 910 VAMVGDGINDAPALTVADVGIAIGSGSDVAIASASFILVSSN 951
                  5679********************************998876 PP

>> E7  E7 protein, Early protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.2   0.00042       1.1      29      83 ..      42      94 ..      25      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00042
                XXXXXXXXXXXXXXXXXXXEE.EEEEEEXTTTXXEEEEEEEEXHHHHHHHHHHHH CS
          E7 29 edeeeeeedeptlkdktprrpgYavevaCprCeqklrlvvlateegirqleqlLv 83
                +d  e e+  ++++ ++   + Y+ ++ Cp C++ l++  ++  ++i+++ +lL+
  CDO71344.1 42 KDSHETEQASQKNE-EKSSSNEYHQHAECP-CRVDLSVDGMTCASCINTITALLS 94
                33344555544444.4445555********.********9999*******99996 PP

>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.7   0.00048       1.2      14      78 ..     263     328 ..     257     336 .. 0.86
   2 ?    0.5   0.1      0.23   5.9e+02      24      72 ..     365     411 ..     358     423 .. 0.80
   3 ?    1.8   1.1     0.088   2.2e+02      18      66 ..     598     645 ..     594     649 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00048
      DUF485  14 rrfafpltaiflvvYfgfvllvafapdllatkvgeg.nitvglllgllqivltflltglYvrrAnr 78 
                 ++++ + t+++ vvY ++v  ++ ++ +l++++++g +  v ++l +l   ++f  +g++ rr  +
  CDO71344.1 263 SAVVAIPTFVIGVVYASLVPSSSSTRRWLEAPIWRGnASRVQWALFILATPVMFYSAGMFHRRCLK 328
                 567778899999************************777899999999999999999999998665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.23
      DUF485  24 flvvYfgfvllvafapdllatkvgegnitvglllgllqivltflltglY 72 
                 + v+Yf+ ++l+ +a   l+++  +g       +  +++++tfll+g +
  CDO71344.1 365 VSVAYFASIALLVLA--ALQNPSPSGRGDTTTYFDSVVFLTTFLLAGRF 411
                 567788888887777..78888887888888899999999999999876 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.088
      DUF485  18 fpltaiflvvYfgfvllvafapdllatkvgegnitvglllgllqivltf 66 
                 ++l+ ++ ++ +++ +  a+ pd l  +vg g   + l ++++++v+++
  CDO71344.1 598 TLLASVTWIIWLSLGFGGALPPDYLDIEVG-GWAVWSLEFAIAVFVVAC 645
                 556667777788888888999*********.9999**********9975 PP

>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.5     9e+03      10      24 ..     304     318 ..     303     332 .. 0.80
   2 ?   -2.1   0.1       1.9   4.9e+03      43      60 ..     370     387 ..     350     416 .. 0.59
   3 ?   10.5   0.7   0.00023       0.6      24      94 ..     954    1031 ..     929    1032 .] 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
     DUF4149  10 qlwvtfvvapvlfrs 24 
                 q+++ + ++pv+f s
  CDO71344.1 304 QWALFILATPVMFYS 318
                 788888999999976 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
     DUF4149  43 glglalsvlllltevavg 60 
                   ++al+vl++l ++  +
  CDO71344.1 370 FASIALLVLAALQNPSPS 387
                 345666666666666433 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00023
     DUF4149   24 sL......prhqfgelqsklFplyfglglalsvlllltevavgseklasee.llqlllllvvllltllnafyleprit 94  
                  sL      +r +f +++ + F +  +  +al+v + + ++a + +    ++ l+ +l+++ v++++ll ++y ep+i+
  CDO71344.1  954 SLlilcdlSRTVFNRVKFNFFWASVYNLVALPVAAGVIYPAGHARLPPVWAsLAMALSSVSVVCSSLLLRLYREPKIS 1031
                  323445559*********************************94444444447777888888889999*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1032 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 6370.96
//
Query:       CDO71345.1  [L=1230]
Description: hypothetical protein BN946_scf184908.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-46  157.2   0.2      3e-46  157.2   0.2    3.7  5  E1-E2_ATPase  E1-E2 ATPase
    1.1e-43  147.5   1.9    1.1e-12   48.2   0.1    5.2  4  HMA           Heavy-metal-associated domain
    2.5e-35  122.7   0.2    5.1e-35  121.7   0.2    1.6  1  Hydrolase     haloacid dehalogenase-like hydrolase
    0.00038   20.3   0.1     0.0015   18.3   0.0    1.9  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.012   15.8   0.1         13    5.9   0.0    3.3  3  SNAD4         Secreted Novel AID/APOBEC-like Deaminase 4
      0.076   13.4   0.0       0.29   11.5   0.0    2.1  1  HAD           haloacid dehalogenase-like hydrolase
        0.1   12.8   0.1         47    4.3   0.0    3.3  3  APOBEC1       APOBEC1
        1.2    9.0   3.5         16    5.4   0.2    2.7  2  HscB_4_cys    Co-chaperone HscB tetracysteine metal binding m
        3.8    8.0   8.0         30    5.1   0.0    4.3  5  Fer2_BFD      BFD-like [2Fe-2S] binding domain


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.74   1.5e+03     146     170 ..     223     247 ..     190     253 .. 0.74
   2 ?   -2.7   0.0       1.8   3.6e+03      92     117 ..     421     446 ..     417     450 .. 0.86
   3 ?   -0.3   0.0      0.33   6.6e+02     141     173 ..     459     491 ..     453     498 .. 0.80
   4 ?   -1.1   0.4      0.57   1.1e+03     122     180 ..     603     656 ..     556     657 .. 0.60
   5 !  157.2   0.2   1.5e-49     3e-46      12     180 ..     686     870 ..     676     871 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.74
                   HHHHHHHHHHHHHS-TTHHHHHHHH CS
  E1-E2_ATPase 146 eallralallvaaiPcaLplavpla 170
                     ll   a+lv+++P+  p +v+++
    CDO71345.1 223 VDLLGNSATLVVSVPEIVPSVVSTI 247
                   5566667899*********999987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                   STTTTTSTTS--------HHHHHHHH CS
  E1-E2_ATPase  92 telgkiarlveeakskktplqkkldk 117
                    ++ +++r+ve+a+ +k++++  l+k
    CDO71345.1 421 LTIRTVIRAVESASDEKAHFTATLHK 446
                   578999*************9998876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.33
                   TSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHH CS
  E1-E2_ATPase 141 gkslaeallralallvaaiPcaLplavplalal 173
                   +++ ++ llr +  +v+aiP  ++ +v ++l+ 
    CDO71345.1 459 RREQRNLLLRLIFSIVVAIPTFIIGIVYMSLVS 491
                   455557889999999999999999999998875 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.57
                   HHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 122 lvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlak 180
                   +v++ +++++  fl a+++          a++ lv   P    l+vp++ + + ++l++
    CDO71345.1 603 VVFLTMFLLAGRFLEAYSK-----GRTADAITALVKLRPTSALLVVPVSASRSHSKLSR 656
                   2233333333333333333.....44557889999999998889999998888888776 PP

  == domain 5  score: 157.2 bits;  conditional E-value: 1.5e-49
                   TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS------ CS
  E1-E2_ATPase  12 dgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeaksk 107
                   ++++e+ida+ l++GD+v + +g + paDg +v g    +des+LTGEs+ v+k+ gd+vf Gt++++g + ++V ++g +t+l++++r+v+e +  
    CDO71345.1 686 GTKVERIDAELLEVGDLVRVLNGASPPADGTVVAGDGgAFDESSLTGESRLVKKQVGDKVFLGTINKAGVVDVRVDEIGGQTMLDQVVRVVREGQTH 782
                   568899******************************************************************************************* PP

                   --HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...............HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 108 ktplqkkldklgkvlvpvvlliallvflialllgksla...............eallralallvaaiPcaLplavplalalgarrlak 180
                   ++p+++ +d +++++vp+v+l+a+++++++l lg + a                +l +a+a++++a+Pc+++la+p+al++g + +ak
    CDO71345.1 783 RAPIERVADLVTGYFVPIVTLLAIITWVVWLGLGIGGAlpqdyldievggwavWSLEFAIAVFIVACPCGIGLAAPTALLVGSGLAAK 870
                   ********************************99998899999999999999555555*************************99997 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.2e-12   2.4e-09       1      62 []      37      98 ..      37      98 .. 0.94
   2 !   48.2   0.1   5.6e-16   1.1e-12       1      62 []     193     253 ..     193     253 .. 0.96
   3 !   41.3   0.1   7.8e-14   1.6e-10       2      62 .]     285     344 ..     284     344 .. 0.96
   4 !   15.5   0.0   9.2e-06     0.018       2      58 ..     371     432 ..     370     436 .. 0.66

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.2e-12
         HMA  1 tvrvsgmhCagCaakvekvLselpgV.esvkvdlatktvtVegdaestklrkiieaiekagyk 62
                t++vs+mhC++C+++++++L++l+   + v+v+ +t++vtV+++ +  ++  i++ai++agy+
  CDO71345.1 37 TLFVSNMHCGSCVKTIKEALQSLSPPpSMVDVSIVTQSVTVKHSRSL-PIGSIKAAIDNAGYD 98
                789********************888899**************8886.67************7 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 5.6e-16
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 t+++ gm+Ca+C+++++++Lselp V++v vdl  +++t ++++++  +  ++ +i+++gy+
  CDO71345.1 193 TLSIGGMTCASCSNAITSALSELPNVSKVAVDLLGNSATLVVSVPE-IVPSVVSTIQDIGYE 253
                 67899****************************************9.6799**********7 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 7.8e-14
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 ++v+gm+Ca+C+++v+  Ls +pgV+ v+v+l  k++t  ++  + ++ +++e+i++agy+
  CDO71345.1 285 LSVDGMTCASCSNTVTGLLSDIPGVSGVVVNLLGKSATAIVESRD-LVPQLVETIKDAGYE 344
                 689**************************************9998.789***********7 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 9.2e-06
         HMA   2 vrvsgmhCagCaakvekvLselpgV....esvkvdlatktvtVeg..daestklrkiieaiek 58 
                 +r++gm C +C ak++ +L +l g+    e+  ++     +t ++   ++++++r++i+a+e+
  CDO71345.1 371 LRIQGMFCPHCPAKIMAALTSL-GNhiqiEKPLISHTDPLLTLTYtpAPPDLTIRTVIRAVES 432
                 79***************99887.4444445555555555555555214444566777777776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.2   2.6e-38   5.1e-35       2     210 .]     889    1146 ..     888    1146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 2.6e-38
                  SEEEEESBTTTBCHH.HHHHHHHHHH..........CHHHHHHHHHH..HHCHHHHHHHHHHHHH...HHHHHHHHHETTTE..........HHHHT CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxx..........xxxxxxxxxxx..xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx..........xxxxx RF
   Hydrolase    2 ktvvfDkdGTLttge.psvedvivsa..........alalaaaletg..sehpigkalvaaakar...sgaltgfatfigrg..........ayaig 72  
                  + ++fDk+GTLt+g  p v+d+ v            +  l+ ale+   s hp++ a+  ++++    s + +++++ +grg          ++ ig
  CDO71345.1  889 DIIIFDKTGTLTEGGdPKVTDAEVVTdvrgdvhlskEDILGIALEIEeaSSHPLASAIRSYCEQNaaaSHSASSVQETPGRGlqgsfstlalTAVIG 985 
                  689*********9998888885555555687766666667777777799****************9999999************************* PP

                  HHHHHHHH..HCHHHHHHHHHHHHHHCHHHHHH...........TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                  xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   73 kpewltal..dippdlgaaigsaqsqgrtvall...........qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156 
                  ++ w++++  ++  +lg   +++ s+g++v+ll              +la f+++dp  ++ ea+ ++  L++ g+ +++++gdn +ta+++a+ +G
  CDO71345.1  986 NEPWMEEHhaEVDGKLGRLLHTWKSEGKSVVLLaarrdagdsssHFLVLAAFAVSDP--IRAEAKGVITNLQEHGLGTWIISGDNATTAKAVARSVG 1080
                  *********************************888877766654499*********..************************************** PP

                  GGGESEEEEHHCES..STTTSHHHHHHHHHHHT....................STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  157 ddyfdaviasdiet..vakpspegkvaaireLq....................gkpeevamVGDgvnDaaalaaAg 210 
                            + et  +a+++p +k ++++ Lq                     +   vamVGDg+nDa+al aA+
  CDO71345.1 1081 ----------IPETnvIAEVLPHQKAEKVQWLQqvgmkrplrglarlfgrrrlNNRCIVAMVGDGINDAPALTAAD 1146
                  ..........666688****************9999************9999866777****************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.84   1.7e+03      17      59 ..    1044    1087 ..    1041    1089 .. 0.82
   2 !   18.3   0.0   7.4e-07    0.0015     206     247 ..    1129    1170 ..    1113    1176 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.84
                   -HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC.SEEE CS
  Hydrolase_3   17 sektkeaikklkekgikvviATGRslravlpvleelgld.lpvi 59  
                     ++k +i +l+e+g    i +G + ++++ v++++g+  + vi
   CDO71345.1 1044 RAEAKGVITNLQEHGLGTWIISGDNATTAKAVARSVGIPeTNVI 1087
                   56778899999999999999999999999999999998755555 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 7.4e-07
                   EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3  206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247 
                   v+ +GDg ND + L+aa++g+A+g++s+ +++ A+++  s n
   CDO71345.1 1129 VAMVGDGINDAPALTAADVGIAIGSGSDVAISSASFILVSSN 1170
                   5679********************************998877 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0067        13      38      66 ..      30      58 ..       5      71 .. 0.82
   2 ?    5.5   0.0     0.009        18      41      71 ..     182     219 ..     141     223 .. 0.73
   3 ?   -1.7   0.0       1.6   3.1e+03      43      69 ..     282     308 ..     270     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0067
       SNAD4 38 psqeyrvtwylswsPCaeCaekiaeflae 66
                ++ e++ t+++s   C +C++ i e l++
  CDO71345.1 30 EASEITTTLFVSNMHCGSCVKTIKEALQS 58
                4566899*****************99875 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.009
       SNAD4  41 e.......yrvtwylswsPCaeCaekiaeflaehpnvt 71 
                 +        rvt+ +    Ca+C+++i++ l+e pnv+
  CDO71345.1 182 TpheaaspSRVTLSIGGMTCASCSNAITSALSELPNVS 219
                 23334445899**********************99996 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.6
       SNAD4  43 rvtwylswsPCaeCaekiaeflaehpn 69 
                 rv + +    Ca+C++ ++ +l++ p 
  CDO71345.1 282 RVELSVDGMTCASCSNTVTGLLSDIPG 308
                 5555666667********999987665 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.29      88     187 ..    1045    1142 ..     989    1143 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
         HAD   88 pgalellaahraaGdrvvvvSgglrplvepllaelg..adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDsps 182 
                   +a+ ++   ++ G  ++++Sg +   ++++++ +g    +v+a+ l ++ +  +  +l++   ++   ++ l++ l+ + +   ++ v  +GD+++
  CDO71345.1 1045 AEAKGVITNLQEHGLGTWIISGDNATTAKAVARSVGipETNVIAEVLPHQ-KAEKVQWLQQVGMKR--PLRGLAR-LFGRRRLNNRCIVAMVGDGIN 1137
                  477888888889************************88778888833333.222222223333333..3444666.6666666667767777***** PP

         HAD  183 Dlpll 187 
                  D p+l
  CDO71345.1 1138 DAPAL 1142
                  ***98 PP

>> APOBEC1  APOBEC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.036        71      39      63 ..      34      58 ..      18      76 .. 0.81
   2 ?    4.3   0.0     0.024        47      42      68 ..     193     219 ..     166     225 .. 0.83
   3 ?   -0.7   0.0      0.88   1.8e+03      49      68 ..     291     310 ..     277     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.036
     APOBEC1 39 csitwflstspcgkcskaileflsq 63
                 + t f+s   cg c k i+e l++
  CDO71345.1 34 ITTTLFVSNMHCGSCVKTIKEALQS 58
                456789***************9975 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
     APOBEC1  42 twflstspcgkcskaileflsqhpnvt 68 
                 t  +    c  cs+ai+  ls+ pnv+
  CDO71345.1 193 TLSIGGMTCASCSNAITSALSELPNVS 219
                 55556678*****************97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.88
     APOBEC1  49 pcgkcskaileflsqhpnvt 68 
                  c  cs+ ++ +ls  p v+
  CDO71345.1 291 TCASCSNTVTGLLSDIPGVS 310
                 699************99986 PP

>> HscB_4_cys  Co-chaperone HscB tetracysteine metal binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4     0.032        65      20      27 .]     137     144 ..     131     144 .. 0.90
   2 ?    5.4   0.2    0.0078        16      16      25 ..     374     383 ..     366     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.032
                 -TTT--B- CS
  HscB_4_cys  20 CpqCRALQ 27 
                 C+qCRA Q
  CDO71345.1 137 CAQCRAEQ 144
                 ******65 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0078
                 ---B-TTT-- CS
  HscB_4_cys  16 defFCpqCRA 25 
                  + FCp+C A
  CDO71345.1 374 QGMFCPHCPA 383
                 578*****65 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.015        30      36      50 ..      43      57 ..      30      58 .. 0.82
   2 ?   -4.1   0.1         9   1.8e+04      37      43 ..     136     142 ..     133     143 .. 0.82
   3 ?    3.1   0.0     0.062   1.2e+02      35      50 ..     198     213 ..     184     214 .. 0.84
   4 ?    1.8   0.0      0.16   3.2e+02      35      50 ..     289     304 ..     286     305 .. 0.89
   5 ?   -3.9   0.1         9   1.8e+04      35      49 ..     375     389 ..     374     390 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.015
    Fer2_BFD 36 tgCggCrpaieeiLa 50
                + Cg+C++ i+e L+
  CDO71345.1 43 MHCGSCVKTIKEALQ 57
                56*********9987 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 9
    Fer2_BFD  37 gCggCrp 43 
                 +C++Cr 
  CDO71345.1 136 NCAQCRA 142
                 7****96 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.062
    Fer2_BFD  35 gtgCggCrpaieeiLa 50 
                 g+ C++C +ai   L 
  CDO71345.1 198 GMTCASCSNAITSALS 213
                 677********98876 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.16
    Fer2_BFD  35 gtgCggCrpaieeiLa 50 
                 g+ C++C + +  +L 
  CDO71345.1 289 GMTCASCSNTVTGLLS 304
                 789********99985 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 9
    Fer2_BFD  35 gtgCggCrpaieeiL 49 
                 g+ C  C  +i++ L
  CDO71345.1 375 GMFCPHCPAKIMAAL 389
                 677****99999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 8127.97
//
Query:       CDO71346.1  [L=908]
Description: hypothetical protein BN946_scf184908.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-89  300.6   0.1    3.1e-89  300.0   0.1    1.3  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
    1.6e-33  114.7   0.0    3.5e-33  113.6   0.0    1.6  1  PPIP5K2_N   Diphosphoinositol pentakisphosphate kinase 2 N-te
    1.8e-06   27.7   0.0    3.6e-06   26.7   0.0    1.4  1  RimK        RimK-like ATP-grasp domain
  ------ inclusion threshold ------
      0.027   13.6   0.2      0.041   13.0   0.2    1.2  1  FSIP1       FSIP1 family


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.0   0.1   6.9e-93   3.1e-89       2     383 .]     332     829 ..     331     829 .. 0.94

  Alignments for each domain:
  == domain 1  score: 300.0 bits;  conditional E-value: 6.9e-93
                 EEEEEEEEE--SBB-SHHHHHHHH.....HHHHHHHH........................................HHCHHTGCCGGGGT........ CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvt.....spiflsllkkhke...............................Klkqlktalekkghfpgtyrkv.... 60 
                 Lk  v+v RH+dRtPkqk k ++       + f+ ll++++e                               Kl+ql++al +k + pgt+ ++    
  CDO71346.1 332 LKANVTVFRHADRTPKQKLKFNFPigerwTQPFVTLLNGEREeiilreraqlnliataveeakglgadgedlvKLTQLNNALFSKIDLPGTKAQLkpvy 430
                 566799**************99852222257788888888889******************************************************** PP

                 ..............--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---............. CS
  His_Phos_2  61 .........eveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlrlhltykdlkirassegRviaSAaafakGllglegelt............. 137
                          +  kl+l+ kwgge th++r+q ++lG+ +++++   ++++ l  +++ki++sse+Rv+aSA+ fa +l++ +  +t             
  CDO71346.1 431 skkqpgqvrKLTKLTLVFKWGGEFTHSARYQSRDLGENMKKDIS-IMNKEIL--RNVKIYTSSERRVVASAEVFAAALFDSNTSTTsstlsttsgaqss 526
                 ********99**********************************.******9..*************************9999777************* PP

                 ...........................S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTS.HHTCHHHC.......HHHTGGHCHHHHCHCCCCCHH CS
  His_Phos_2 138 ...........................dllskdkdllddsnaakdlldeakkklkelltega.eacpafew.......pikvakrvdelvkylkedmde 201
                                              l ++kdllddsnaakdl+d++kk+lk ll++g+ e+ p+++w       p++v k+v el+++++e+m++
  CDO71346.1 527 rsstdggqasgsqfgsrrensmpaqkpPKLIVRKDLLDDSNAAKDLMDDVKKRLKILLRPGEpEKRPELTWpksmkkePVEVVKEVIELLSQFRETMRR 625
                 ***************************99*********************************999********************************** PP

                 HHH....HHCHHH.CTTEEEE-HHHHHHHHHHHHHHHH..HHCT-TTGGGCTH..HCHHHHHH..................HHHHHHHHHC........ CS
  His_Phos_2 202 nia....krleql.cpgesnllakerwdklercfyekn..kfdiskicdlydemkydalhnry..................lkdleelyklakv..... 270
                 n++    ++ +++ c+g++++l++erw+kl+++f+++   kfd+s++++lyd++ky alh r                     +l+ely++ak      
  CDO71346.1 626 NWEtmdvDKIQERwCCGDEPWLFRERWEKLFEDFCDVKqeKFDPSRVSELYDTIKYCALHHRTflfaifsehgegsdqpsqDRRLHELYGRAKAlfdlv 724
                 ***8666666666*99999*****************9999*********************************************************** PP

                 .....TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHC...TTTTTBTTB.SSS.TTT..HCCCS-CT-EEEEE CS
  His_Phos_2 271 ipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaL...glpeelagedslaaldrlsaspelpymsqivfe 366
                  pqEygi+peek +iG+l+++pll+ +  dl r+r    +++  +l lyft++shi++l+n+    glp   a            ++pel+y s+i+fe
  CDO71346.1 725 APQEYGIEPEEKEEIGVLTSLPLLRNVVGDLERAR----NNEECSLTLYFTKESHIHTLVNLVllsGLPI--ANR----------RIPELDYCSHITFE 807
                 ***********************************....9*********************765788887..333..........69************ PP

                 EEEE.....TCTTTEEEEEEEC CS
  His_Phos_2 367 lyed.....ssekkfyvrllls 383
                 lye+     +s+k+++++l+ls
  CDO71346.1 808 LYERnhgrgKSDKEYSIKLSLS 829
                 ***87777766666****9986 PP

>> PPIP5K2_N  Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   7.9e-37   3.5e-33       8      90 .]       1      85 [.       1      85 [. 0.97

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 7.9e-37
   PPIP5K2_N  8 mekkakskpmkeilerlekf..eelevvifeeevileepveeWPlcdvlisfyskgfPlekaieYaklrkpflindleaqelllD 90
                m+ ka+sk+m+eil+rl +   + +ev +f+++vil+e+ve+WP cdvlisf+s++fPl+kai+Y+klr p++indl  q+ll+D
  CDO71346.1  1 MDVKARSKAMREILTRLVERsnGAIEVKVFGDKVILDEDVENWPRCDVLISFFSTDFPLDKAIQYVKLRAPYCINDLPPQALLWD 85
                899**************9875689************************************************************9 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     8e-10   3.6e-06      75     165 ..     206     300 ..     188     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 8e-10
                 --EEEEE--SS-SEEEEEEEETTEEEEEEEEE-..-SSS----TTTT-EEEE----HHHHHHHHHHHHHCT-SEEEEEEEEETTEE..EEEEEES CS
        RimK  75 ailvqeyieeaenediRvlvvddevvaalrrvs..keGdFRsnlhrGgvaeklqlseeekelAikaakamelvvaGvDllrakrgl..lvlEvns 165
                 + +  ++++  ++edi+v  v+ e   a  r+s   +G  R n +   +  + +ls+eeke A ++++  + +v+G D+lr ++g    v++vn 
  CDO71346.1 206 SYIYEKFVDVDNSEDIKVYTVGREYTHAETRKSpfVDGVVRRNTEGKEIRFVTHLSQEEKEWAARISEGFGQMVCGFDMLRCDNGKtsQVIDVNG 300
                 567889*********************9999984459*******99999999****************************999765226999996 PP

>> FSIP1  FSIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.1e-06     0.041     160     287 ..     457     587 ..     451     607 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.1e-06
       FSIP1 160 eeslkskeesentkkfLaLtseseetedvshveeeetfv...pvFatqipeeeyensassekkdfasdsetreslrkaekkkasneekielkg..kkeq 253
                 + + +s++  en kk +++++++   +++ ++ +e  +v    vFa  + + ++ + +ss+ + +++++++r+s    + ++++  ++ e +   +k +
  CDO71346.1 457 SARYQSRDLGENMKKDISIMNKEILRNVKIYTSSERRVVasaEVFAAALFDSNTST-TSSTLSTTSGAQSSRSSTDGGQASGSQFGSRRENSMpaQKPP 554
                 5677899999999999999999988888886666665542226****998888555.5567777888888899998888888888877776556699** PP

       FSIP1 254 dFIkrNieLAkdagnlvvmtdeEkkRLeeLLkdi 287
                   I r ++L  d++    ++d+ kkRL+ LL+  
  CDO71346.1 555 KLIVR-KDLLDDSNAAKDLMDDVKKRLKILLRPG 587
                 ***99.6999*********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5905.28
//
Query:       CDO71347.1  [L=253]
Description: hypothetical protein BN946_scf184908.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-14   52.9   0.1    4.6e-14   52.3   0.1    1.3  1  UQ_con    Ubiquitin-conjugating enzyme
     0.0031   17.5   0.2        1.4    8.9   0.0    2.2  2  AAA_14    AAA domain
  ------ inclusion threshold ------
      0.042   14.1   0.0      0.057   13.7   0.0    1.4  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   7.6e-18   4.6e-14      13     122 ..      68     181 ..      55     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 7.6e-18
                 TTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-C.GGGSTTT--T.TSHHHHHHHHHHHHH CS
      UQ_con  13 kpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcl.diLkeekWsp.altlesvllsiqsLl 108
                  p g++++++ d nl  w+++++  ++++Y + + k++++fp+dYP +pP v+f t++fHP ++ ++G+  l   ++   W+p  +++ +vl+ i + +
  CDO71347.1  68 CPLGMYVTPSPD-NLLLWDAVFFV-HQGYYTDSILKFRMTFPPDYPEHPPVVQFLTDVFHPLISqQDGTFNLaPRFR--PWRPkEHHVFDVLHWIKAAF 162
                 567888888887.***********.9**************************************9*****9944455..59998999999999998766 PP

                 .....HS--TTS-SSHHHH CS
      UQ_con 109 .....aepnpesplnkeaa 122
                      +e ++ +++nkea+
  CDO71347.1 163 kkhalDEIKEADCFNKEAY 181
                 3222244455566666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0013         8      91     125 ..      28      62 ..      16      65 .. 0.83
   2 !    8.9   0.0   0.00024       1.4      69     110 ..     166     205 ..     140     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
      AAA_14  91 knldvivtGSnskllskeiatslagrvaeielypl 125
                 +n +v+ tGSn+++    ++t +++ + ++e   l
  CDO71347.1  28 QNTRVLSTGSNASNVEASTSTAVTRTAVSLEYASL 62 
                 589************99999999998888876655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00024
      AAA_14  69 flDEiqevpewekalkslvdegknldvivtGSnskllskeia 110
                  lDEi+e++++ k   +++d+++   + +   +s++ls+ ++
  CDO71347.1 166 ALDEIKEADCFNKEAYRYHDTTSS--FAALATQSSMLSQSAS 205
                 69******************9955..6666666666666433 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.5e-06     0.057      51      77 ..      96     122 ..       6     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-06
                 -CEEEEEEEEE-SSTTSS--EEEEEEC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  51 kkpslkleiklpeeYPeeaPiislsst 77 
                 ++  lk+ +++p++YPe +P++++ + 
  CDO71347.1  96 TDSILKFRMTFPPDYPEHPPVVQFLTD 122
                 566789999************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1719.36
//
Query:       CDO71348.1  [L=219]
Description: hypothetical protein BN946_scf184908.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-06   26.2   3.1    1.6e-05   25.0   3.1    1.6  1  HIG_1_N   Hypoxia induced protein conserved region
  ------ inclusion threshold ------
      0.021   14.3   0.3      0.032   13.6   0.3    1.2  1  DUF2162   Predicted transporter (DUF2162)
      0.084   12.7   1.2       0.13   12.1   1.2    1.2  1  DUF1944   Domain of unknown function (DUF1944)


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   3.1   2.6e-09   1.6e-05      11      51 ..     125     165 ..     119     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.6e-09
     HIG_1_N  11 atvgalvrglrsmkrgdskqsnrlmraRiaaQaftvlalva 51 
                 + + + v g++ m+++ +++ ++  +aR++aQ++t+++l+a
  CDO71348.1 125 WAASMAVAGAVVMRNRYQSTPQKIVQARMWAQGLTIGVLIA 165
                 56667779*******************************97 PP

>> DUF2162  Predicted transporter (DUF2162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   5.4e-06     0.032      29      99 ..     116     188 ..     107     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.4e-06
     DUF2162  29 kklllilllYlllflllalll.ssldekllesllrygmvlhllmAlllialGlytlkkwkk.skkdvssrtfl 99 
                  +  +il++++++++++++++ ++ ++++ +++++  m+   l   +lia+G++t+ + ++ +++++  +++ 
  CDO71348.1 116 NQYKIILGSWAASMAVAGAVVmRNRYQSTPQKIVQARMWAQGLTIGVLIAAGVLTQAQRAQtHENRSVDHSWA 188
                 455567777777777766554155559******************************9887444444455554 PP

>> DUF1944  Domain of unknown function (DUF1944)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.2   2.2e-05      0.13      57     135 ..     101     179 ..      94     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
     DUF1944  57 skhkakaklkwGaeckqYkvsvtaetgqlaskPalrlklewekvPsslkevakkveeyipgvalllgfsqkkeknaskq 135
                 +   +kaklk  a  +qYk+ +   ++++a   a+ ++  ++  P+++ ++  +++   +gv + +g+  + ++ ++++
  CDO71348.1 101 NALDTKAKLKEWAMRNQYKIILGSWAASMAVAGAVVMRNRYQSTPQKIVQARMWAQGLTIGVLIAAGVLTQAQRAQTHE 179
                 556789999999999*****************************************************99999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1658.51
//
Query:       CDO71349.1  [L=694]
Description: hypothetical protein BN946_scf184908.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-21   77.0   2.6    1.3e-21   77.0   2.6    2.3  2  Ferric_reduct  Ferric reductase like transmembrane component
    7.4e-11   42.4   0.0    1.1e-10   41.8   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain
    1.2e-09   38.2   0.0    2.2e-09   37.4   0.0    1.4  1  FAD_binding_8  FAD-binding domain
     0.0016   19.1   0.0     0.0031   18.1   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.056   13.5   0.7       0.13   12.3   0.1    1.9  2  PgaD           PgaD-like protein


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.68   2.4e+03      79     108 ..      56      82 ..      33      89 .. 0.55
   2 !   77.0   2.6   3.6e-25   1.3e-21       2     124 ..     174     289 ..     173     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.68
  Ferric_reduct  79 ynllGvlalllliilaitSlkfirrrlsye 108
                    + ++Gvlal+  + ++ +   fi    +y+
     CDO71349.1  56 NAYWGVLALIGVATVINVL--FIA-WATYR 82 
                    3446666666544443332..222.44444 PP

  == domain 2  score: 77.0 bits;  conditional E-value: 3.6e-25
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitS 97 
                    G++a+ ++pla++lal+nn++++ltgl+++kl+l+H+ +++++++l+++H+++ ++n+  +      + ld+l+ + + + G+++ ++  +  ++ 
     CDO71349.1 174 GLIAAGQMPLAVFLALKNNPVTWLTGLGHEKLVLMHRIVSRCILVLTWVHFVGEYYNYSDY------DALDELMDEGWKIAGMVGAVAQTATTLLG 263
                    999*******************************************************985......68*************************** PP

  Ferric_reduct  98 lkfirrrlsyelFyylHhllyvaylll 124
                    +k +r r++ye+Fy +H+l++++++++
     CDO71349.1 264 IKQFR-RRYYEIFYSSHILFIIIFIVT 289
                    *****.999***************986 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.2e-14   1.1e-10       2     139 ..     438     632 ..     437     667 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.2e-14
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx................ RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse.gnieihiYlTseyea................ 80 
                    ++ +++agG+G+++++  + +l+k  +++    k++ ++w+vr + ++ew+   L ++  + ++  ++ +++YlT+ +                  
     CDO71349.1 438 TTCVFIAGGTGVAYTLARMHQLFKDVHAHDALAKRVVFVWAVRTEVEYEWVASDLAKIIALAPRaVSLAVEVYLTGGQRNaalqtlpeldksdvdv 533
                    6789***************************************************999999999999*********99996666666655544444 PP

                    .xxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxx............................xxxx RF
  NAD_binding_6  81 .edasdqlissiegenseslk.................................qgvdavsgtr............................nvki 114
                     +                 ++                                       ++t+                             +++
     CDO71349.1 534 eK-----------------TAavstdnskeriasrsssiggcdarncdanegsgA----STPTKppaayfasgpttptaacadddafaiprpGIML 608
                    31.................333334444445556666788888888888866440....4455566666666666677788999999999999*** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 115 hfgRPnlkevlkdiaskhknssvgv 139
                      gRP+++ +l+++ +++ ++ v+v
     CDO71349.1 609 KPGRPDVRIILEEE-VTASSGAVAV 632
                    ***********999.6666666665 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   6.1e-13   2.2e-09       6     108 ..     334     431 ..     330     432 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 6.1e-13
  FAD_binding_8   6 kakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasape......ddklslvikvksgltkklakkllssskkelenkka 95 
                    ka ++ ++ d +++++++      ++aGq+v++ +p+l  +  +sHPFti ++ e      + +++ vi++  g tk l  k +         +  
     CDO71349.1 334 KALIEHTGADGLRVSLKRRIP-GGWNAGQHVFLAFPALG-I--ESHPFTISNVYEkvegsdEAEMVFVIRAMDGQTKMLMDKASDT-------GSC 418
                    556677788999999999996.99**************9.5..********99888899866688999*************99996.......778 PP

  FAD_binding_8  96 klkvlidGPYGap 108
                    +l+ + dGPYG p
     CDO71349.1 419 ELTAFFDGPYGHP 431
                    999********97 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.7e-07    0.0031       1      37 [.     442     482 ..     442     502 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.7e-07
                    EEEEGGGGHHHHHHHHHHHHHCT....TCSEEEEEEEESSG CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak....dktkvvlvyGnrte 37 
                    +iagGtG+a++++ +++++++ +      ++vv+v+++rte
     CDO71349.1 442 FIAGGTGVAYTLARMHQLFKDVHahdaLAKRVVFVWAVRTE 482
                    7********************5558887799********98 PP

>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.6e-05      0.13      58     110 ..      44      95 ..      25     109 .. 0.71
   2 ?   -2.2   0.1       1.1   3.8e+03      21      29 ..     217     225 ..     203     272 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
        PgaD  58 seasasevegslseletlrlYalilvviavlLilWaklnrvrfkakkrrvkap 110
                  ++ + ++ +++++ + + + + +++vi vl+i+Wa ++r+r +   r ++a+
  CDO71349.1  44 YTYVVHKEPRVRNAYWGVLALIGVATVINVLFIAWATYRRYRSRHG-RHHEAA 95 
                 4555555566666677777778899****************88776.444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
        PgaD  21 TllaWagwi 29 
                  +l W+ ++
  CDO71349.1 217 LVLTWVHFV 225
                 444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4743.64
//
Query:       CDO71350.1  [L=645]
Description: hypothetical protein BN946_scf184908.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-17   64.4   0.0    1.8e-17   63.9   0.0    1.2  1  NAD_binding_6  Ferric reductase NAD binding domain
    2.1e-16   60.2   8.5    6.2e-16   58.7   8.5    1.9  1  Ferric_reduct  Ferric reductase like transmembrane component
    1.6e-09   37.8   0.0    3.9e-09   36.6   0.0    1.6  1  FAD_binding_8  FAD-binding domain
    2.2e-05   25.0   0.0    5.3e-05   23.8   0.0    1.6  1  NAD_binding_1  Oxidoreductase NAD-binding domain
     0.0043   16.3   1.9       0.01   15.1   1.9    1.6  1  MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   4.9e-21   1.8e-17       2     154 ..     422     618 ..     421     620 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 4.9e-21
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx...............x RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse.gnieihiYlTseyea...............e 81 
                    ++ +++agG+G+t++i  + +l+k  ++++   +++ ++w+vr + ++ w++  L ++ ++ ++  ++ ++i++Ts ++a               +
     CDO71350.1 422 STCVFIAGGTGVTYTIARMHQLFKDVHSSHACATRVVFVWAVRTEVEYHWLSADLAKIVSNAPSsVSVAVEIFITSARQAtmeslptldkafdveK 517
                    5679***************************************************88888877779**************8777755555544331 PP

                    xxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxx.............xxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  82 dasdqlissiegenseslk....................................qgvdavsgtr.............nvkihfgRPnlkevlkdi 128
                                 +++s++                                     +                     ++ + +gRP+++++l+d+
     CDO71350.1 518 -------------DAASWTrpegngtseenvqempatpqgsgaatptksevyyesGT-------VtpvtpcddglpppRIVRKYGRPDVRKLLEDE 593
                    .............33333344555555556778888887666666666555544333.......15555666******9***************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 129 askhknssvgvfvCGppklvkevkkl 154
                     +++ ++ v+v v Gp++lv+ v+++
     CDO71350.1 594 -VTASTGAVAVDVSGPDGLVNAVRSA 618
                    .999******************9986 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   8.5   1.7e-19   6.2e-16       2     124 ..     164     274 ..     163     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.7e-19
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitS 97 
                    G +a+ ++pl++llal+nn++++ltgls++kl+l+H+++++++f+l+++H i+ ++              ++ll+  + + G+++ ++  i  ++ 
     CDO71350.1 164 GKLAAGQIPLVVLLALKNNPITWLTGLSHEKLVLMHRMVSRCIFVLTWMHLIGEYFRSP-----------AKLLSAHWKIAGLVGAVAQTITTLFG 248
                    78999*************************************************98654...........68999999****************** PP

  Ferric_reduct  98 lkfirrrlsyelFyylHhllyvaylll 124
                    ++ ir r++ye+Fy +H++ ++++++ 
     CDO71350.1 249 IQAIR-RRYYEVFYSTHVACILIFIIC 274
                    *****.999***************986 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.1e-12   3.9e-09       6     108 ..     319     415 ..     317     416 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.1e-12
  FAD_binding_8   6 kakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasape.....ddklslvikvksgltkklakkllssskkelenkkak 96 
                    +a+++ l+   +++++++      +kaGq++++ +p+l  +  +sHPFti ++ e     + +++ +i++ +g t+ l++            ++ +
     CDO71350.1 319 NARIESLGAHGLRVTLRRRIP-GGWKAGQHAFLAFPKLG-I--ESHPFTIGNVYEqddkgEAEMVFIIRAMGGQTRMLNELAIPE-------GNCE 403
                    566777777788899999885.89**************9.5..*******9998875554557999************9988885.......7889 PP

  FAD_binding_8  97 lkvlidGPYGap 108
                    l+  idGPYG p
     CDO71350.1 404 LRASIDGPYGHP 415
                    9*********87 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.5e-08   5.3e-05       1      57 [.     426     487 ..     426     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.5e-08
                    EEEEGGGGHHHHHHHHHHHHHCT....TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak....dktkvvlvyGnrtee.dllyreeleelakklpgrl 57 
                    +iagGtG++++ + +++++++ +      t+vv+v+++rte   + ++++l ++ +++p+++
     CDO71350.1 426 FIAGGTGVTYTIARMHQLFKDVHsshaCATRVVFVWAVRTEVeYHWLSADLAKIVSNAPSSV 487
                    7********************55599999***********9878999999999999999843 PP

>> MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.9   2.8e-06      0.01      93     204 ..     172     275 ..     153     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.8e-06
  MIG-14_Wnt-bd  93 vLlillilfNnPffilellfnswflllldiifqsiFlsvLllFwlvff.eslrdeqnrrktlsfylpklllvlllwlvllvlalyerl.eqlkdpf 186
                     L++ll l NnP+ +l+ l+  +++l+ + +   iF    +l w+ ++ e  r  +   k ls  ++ + lv+++  ++++l+ ++ + +++++ f
     CDO71350.1 172 PLVVLLALKNNPITWLTGLSHEKLVLMHRMVSRCIF----VLTWMHLIgEYFRSPA---KLLSAHWKIAGLVGAVAQTITTLFGIQAIrRRYYEVF 260
                    699******************************999....5669999956665433...5799999999999888877777776666614678899 PP

  MIG-14_Wnt-bd 187 ysiwssalilkilaiila 204
                    ys+     + ++++ii++
     CDO71350.1 261 YSTHV---ACILIFIICI 275
                    98863...4455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4229.04
//
Query:       CDO71351.1  [L=439]
Description: hypothetical protein BN946_scf184908.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-20   72.6   0.0    1.2e-09   37.8   0.0    3.7  2  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
  ------ inclusion threshold ------
      0.019   15.0   0.2      0.088   12.8   0.1    2.1  3  Nup35_RRM_2      Nup53/35/40-type RNA recognition motif
        4.8    5.2   9.3          8    4.5   9.3    1.3  1  Hid1             High-temperature-induced dauer-formation pro


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     2e-13   1.2e-09       1      69 [.     119     195 ..     119     196 .. 0.91
   2 !   29.5   0.1   8.1e-11   4.8e-07       1      69 [.     247     323 ..     247     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2e-13
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.........TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.........etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++VgnL++ +t e Lk++F ++G+i++i ++ +          ++ ++gfa+V+F+++++ + A+  l ++ l+gr+l
  CDO71351.1 119 VWVGNLSFKTTPEALKAFFDGVGEITRIHMPMKmttggpgdrPRQENRGFAYVDFATPDAKAVAIT-LSERPLDGRRL 195
                 79******************************996665555556789******************9.********987 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 8.1e-11
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE.......TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd.......etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf gnL +++tee ++el+     + ++ k +r+         gk kg+afV+F++ e A++Al +  + +l+gr+l
  CDO71351.1 247 LFFGNLGFETTEESIRELLDShRPKTVDEKWIRKvrmgtfeDSGKCKGWAFVDFTNTEHATAALTNPRNHTLNGRKL 323
                 6889***************995666677777777777888899********************************97 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.6   3.6e+03      32      52 ..     112     135 ..     109     136 .. 0.66
   2 ?   12.8   0.1   1.5e-05     0.088      19      52 ..     135     182 ..     131     183 .. 0.93
   3 ?   -2.5   0.0      0.92   5.5e+03      37      53 .]     294     310 ..     287     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.6
  Nup35_RRM_2  32 vpkevsvmyv...kfesekdaekA 52 
                  vpk++++++v    f++  +a kA
   CDO71351.1 112 VPKRQNSVWVgnlSFKTTPEALKA 135
                  788899998633356666666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.5e-05
  Nup35_RRM_2  19 ehFasfGeIvkhyvp..............kevsvmyvkfesekdaekA 52 
                  ++F+ +GeI+++ +p               ++ ++yv f+++++ + A
   CDO71351.1 135 AFFDGVGEITRIHMPmkmttggpgdrprqENRGFAYVDFATPDAKAVA 182
                  59**************************9889**********998877 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.92
  Nup35_RRM_2  37 svmyvkfesekdaekAL 53 
                   +++v f +   a  AL
   CDO71351.1 294 GWAFVDFTNTEHATAAL 310
                  5999***9999998887 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.3    0.0013         8     594     727 ..       6     138 ..       1     148 [. 0.48

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0013
        Hid1 594 sideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaesteesrqesatskkspsg.m 691
                 s +++e+e+ s+ss  +++r+  ++++  + +e +ss+  ++d +++++++ a + +++ + +     +ek+r+k++++  e + +e++ +++ ++g  
  CDO71351.1   6 SGSSSESEQASSSSPPPHKRQRLSEQEIGDDSEDESSSDDSSDAESETSRGDADNDDTPVLSH-----AEKRRQKKKEKRGEIKDTETTGDSTDKKGkA 99 
                 445556666666666666556655565666666555555555655555555555555554333.....3333333333222222222222222221102 PP

        Hid1 692 sqsaeekftpts...ewlesWksklpLetiltllkallp 727
                   +++ ++ p++        W+++l+++t+ + lka + 
  CDO71351.1 100 KVKNTAELAPSKvpkRQNSVWVGNLSFKTTPEALKAFFD 138
                 223344444443111223459999999998887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 2882.07
//
Query:       CDO71352.1  [L=525]
Description: hypothetical protein BN946_scf184908.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-45  153.6   0.0    3.5e-37  128.1   0.0    3.2  3  Ofd1_CTDD       Oxoglutarate and iron-dependent oxygenase deg
    9.3e-31  106.4   0.0    3.4e-30  104.6   0.0    1.9  2  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
    5.6e-15   56.0   0.1    2.4e-14   54.0   0.0    2.0  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00017         1     106     183 ..     129     208 ..      65     220 .. 0.81
   2 !   13.9   0.0   4.4e-06     0.026       2      30 ..     322     350 ..     321     351 .. 0.93
   3 !  128.1   0.0   5.8e-41   3.5e-37     143     255 ..     351     519 ..     350     520 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00017
                 HHHH.HHHHSHHHHHHHHHHHSE.EE..-EEEEEEEEE-TTT-EE--BE----GEEEEEEEEE--..-S-TTTSTT---EEE CS
   Ofd1_CTDD 106 keLlekllkskafrkwlalitgldll..tsesilarRfrpGkdytLatsteeeeavLevtlnltp..tkgWesgevGGyely 183
                   L  + l s  fr++l+++tg+ +l  +++++ +  +r+G  + L +++   + ++   l++     +gW+ +  G+ ely
  CDO71352.1 129 LTLR-DALYSPMFRNFLRAVTGCGPLsgKKQDMSIVSYRKG-CHLLNHDDVIGTRRVSYILYMPLphYQGWQREWGGALELY 208
                 4455.77889*************8887778999999*****.7888888888788888877765433689999888888888 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.4e-06
                 HHHHHTTTB-GGGTSHHHHHHHHHHHHHH CS
   Ofd1_CTDD   2 elefLlkylnpeYLtketveelqeqfeee 30 
                  ++fL+++lnp+YL++ t++ l+ +f ee
  CDO71352.1 322 HVSFLSEFLNPVYLQTRTMKALAARFVEE 350
                 578***********************997 PP

  == domain 3  score: 128.1 bits;  conditional E-value: 5.8e-41
                 TTT-EE--BE----GEEEEEEEEE--.....................-S-TTTSTT---..EEEEE--------------................... CS
   Ofd1_CTDD 143 pGkdytLatsteeeeavLevtlnltp.....................tkgWesgevGGy..elymagdddeeeDpavYks................... 199
                 pG dytLats+ + e +L+v+l+ltp                      +gW+s+ +  +  ++yma++d+e+ DpavY+s                   
  CDO71352.1 351 PGLDYTLATSEAN-ETRLDVVLGLTPqvdgldtvarngdanseeevpEHGWQSEHIIDVdlQCYMAPHDEED-DPAVYRSgsskkkkdaqntngangha 447
                 8*********996.7*******************************99******986542289********9.************************** PP

                 ................------EEEEE---EEEEEEEEEETTEEEEE----TT-SS-EEEEEEEEEEEE-XX CS
   Ofd1_CTDD 200 ................ddeddsvLlslaaswNslslvlrdegvlkFvKYvsasakgsrwdvsgeyevkseee 255
                                 ddedd+ Ll++++ +N+l lvlrdegv++FvKYvsa+a+gsrwd++ge+e+ + +e
  CDO71352.1 448 qngeiemhdgedededDDEDDGTLLTVQPGFNRLLLVLRDEGVMRFVKYVSAAAEGSRWDICGEFEIGMVQE 519
                 ****************9*************************************************966665 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   5.7e-34   3.4e-30       1      93 []     160     271 ..     160     271 .. 0.79
   2 ?   -1.6   0.0      0.73   4.4e+03      54      91 ..     472     511 ..     450     513 .. 0.66

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 5.7e-34
  2OG-FeII_Oxy_4   1 lsvssYekgdvllnHdDvlegeRrvayilyle....eeWkeddGGaLllsdde....g......dvtksivPkwnqlvlFevkes...hsvaeva 78 
                     +s+ sY+kg++llnHdDv +g+Rrv+yily+     + W++++GGaL+l+  +    g        +ksi+P wnq+v+Fev+++   hsv+ev+
      CDO71352.1 160 MSIVSYRKGCHLLNHDDV-IGTRRVSYILYMPlphyQGWQREWGGALELYPVKpgpdGvpepeaVPSKSIPPVWNQFVFFEVQPGhsfHSVEEVV 253
                     7899**************.9***********888889************97664333133222246****************9772245555554 PP

  2OG-FeII_Oxy_4  79 s...vaekeRlsisgWfh 93 
                     +    + ++RlsisgWfh
      CDO71352.1 254 VgesEDGRQRLSISGWFH 271
                     222256789********9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.73
  2OG-FeII_Oxy_4  54 ksivPkwnqlvlFevkes..hsvaevasvaekeRlsisgW 91 
                      ++ P +n+l l    e+    v+ v + ae +R+ i g 
      CDO71352.1 472 LTVQPGFNRLLLVLRDEGvmRFVKYVSAAAEGSRWDICGE 511
                     4678888888877665544355666666777788888775 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   4.1e-18   2.4e-14       2      96 .]     161     271 ..     160     271 .. 0.93
   2 ?   -1.0   0.0      0.58   3.5e+03      45      68 ..     450     483 ..     412     498 .. 0.70

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 4.1e-18
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE.........ET-B--EEE.....................---TT-EEEEE-..B-T.EEE CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLne.....keseeGGelelyekdk...........eavkikpkkgrlvlFesdellp.Hev 79 
                      ++ y++g+++  H+D +      g+rr++++ly+       ++ e+GG+lely+ ++           ++++i+p  +++v+Fe++  ++ H+v
      CDO71352.1 161 SIVSYRKGCHLLNHDDVI------GTRRVSYILYMPLphyqgWQREWGGALELYPVKPgpdgvpepeavPSKSIPPVWNQFVFFEVQPGHSfHSV 249
                     6789************86......78*********6599999999*****************************************99988**** PP

                     --B.-SS.....-EEEEEEEEE CS
  2OG-FeII_Oxy_3  80 lpvtkgg.....eRlsltgwir 96 
                     ++v  g      +Rls++gw++
      CDO71352.1 250 EEVVVGEsedgrQRLSISGWFH 271
                     ***8655899***********8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.58
                     --EEE....................---TT-EEE CS
  2OG-FeII_Oxy_3  45 Gelelyekdk..........eavkikpkkgrlvl 68 
                     Ge+e+++ ++             +++p ++rl+l
      CDO71352.1 450 GEIEMHDGEDededddeddgTLLTVQPGFNRLLL 483
                     5555544444444444444444455777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3688.82
//
Query:       CDO71353.1  [L=325]
Description: hypothetical protein BN946_scf184908.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.028   14.4   0.0      0.028   14.4   0.0    2.7  3  UL42             HCMV UL42
       0.55    9.6   7.9       0.95    8.8   7.9    1.3  1  SelP_N           Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> UL42  HCMV UL42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.2e-06     0.028      48     107 ..     108     168 ..     103     177 .. 0.84
   2 ?   -1.4   0.5      0.24   2.2e+03      26      49 ..     267     284 ..     253     303 .. 0.58
   3 ?   -0.4   0.5      0.12   1.1e+03      21      42 ..     300     321 ..     286     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.2e-06
        UL42  48 pyclvsspsprhtfdmdmmempatmhpt..tgayfdngwkwtfallvvailgiiflavvftv 107
                  y   ssps r t+  ++   p  m+     g  ++n  +w f   vva+lg++f+ +v+ +
  CDO71353.1 108 SYTTFSSPSVRSTVCEELSRHPELMRDMgeMGLSLENCEQW-FERAVVAVLGLMFILIVVRL 168
                 58899********************8752279999***999.8999*********9888654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.24
        UL42  26 cpttvstppppppdcspppyrppy 49 
                 +p+ v+tp  p       p+r  +
  CDO71353.1 267 APSPVATPGSPR------PHRHSH 284
                 455555555544......444443 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.12
        UL42  21 qamglcpttvstppppppdcsp 42 
                 +      t+vs p pp  d   
  CDO71353.1 300 HQTASGRTSVSRPAPPTGDEKT 321
                 445556799****999988655 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.9   0.00011      0.95     184     212 ..     276     304 ..     250     322 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00011
      SelP_N 184 hehahshkqghkhhekhghhHkekeelse 212
                  +++h+h+++h h ++h h+H +++++ +
  CDO71353.1 276 SPRPHRHSHSHSHARSHSHPHSHRHQTAS 304
                 33444444444444444444444322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2629.86
//
Query:       CDO71354.1  [L=215]
Description: hypothetical protein BN946_scf184908.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-05   23.2   0.1    0.00013   22.2   0.1    1.5  1  HIG_1_N   Hypoxia induced protein conserved region
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.21   11.6   0.0    1.7  1  DUF3561   Protein of unknown function (DUF3561)


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.4e-08   0.00013      16      51 ..     126     163 ..     110     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.4e-08
     HIG_1_N  16 lvrglrsmkrgdskqs..nrlmraRiaaQaftvlalva 51 
                  + g++ + ++d  qs  ++l +aR++aQ++t+++l+a
  CDO71354.1 126 ALVGSFTYIMRDPYQSvpQKLVQARMWAQGLTIGILIA 163
                 3358888889988866558*****************97 PP

>> DUF3561  Protein of unknown function (DUF3561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.21      16      76 ..       6      58 ..       1      70 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
     DUF3561 16 eeedeptyslsGavvGfvsyllalaiPfllyGsntlffllytWPfflallPvsvlvGvals 76
                e + + + +l G++ Gfv   la+a+P       t +f+   WP++ al P    +G+++ 
  CDO71354.1  6 ELDAQQRATLIGGLKGFVG-GLAFALP-------TSYFMHRKWPYYRALPPSLKALGIIIV 58
                4556677889999999987.4789988.......789*************99988998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1780.95
//
Query:       CDO71355.1  [L=328]
Description: hypothetical protein BN946_scf184908.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-20   73.5   0.3      6e-19   68.7   0.4    2.1  2  Abhydrolase_1    alpha/beta hydrolase fold
    4.9e-18   66.5   0.4    6.9e-18   66.1   0.4    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
      7e-10   38.6   0.1    3.8e-09   36.2   0.1    1.9  2  Hydrolase_4      Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.097   11.7   0.0       0.14   11.1   0.0    1.2  1  Chlorophyllase   Chlorophyllase
       0.18   10.7   0.0       0.28   10.1   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.4   1.7e-22     6e-19       1     107 [.      30     136 ..      30     188 .. 0.87
   2 ?    2.9   0.0     0.021        74     234     256 ..     289     310 ..     262     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.7e-22
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p+l+++hG+p +++ w++   +  ++k+g+ +++++l+G+g Ss +++   + y    v++dl  i d+ ++ + + +Gh++G+ +++ +a+ yp+
     CDO71355.1  30 PTLLFVHGFPSTAHDWRN--QIAFFSKAGYGIVAPNLLGHGGSSSPSTL--QSYVPSRVCADLIDIIDQAKVNQAVAIGHDWGSIVSSRLASYYPQ 121
                    78****************..9999************************9..8898889************************************** PP

                    GEEEEEEESE....C CS
  Abhydrolase_1  97 rVkalvllga....i 107
                    r ka+++l++    +
     CDO71355.1 122 RFKAFAFLAGgyypL 136
                    ********9965551 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
                    HHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 234 aqllpkkrlvvisdagHlafleg 256
                    ++ +pk   v   d+gH+++le 
     CDO71355.1 289 RDFCPK-ATVDMYDTGHWVQLEA 310
                    456999.9************996 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.4   1.9e-21   6.9e-18       1     217 [.      32     314 ..      32     316 .. 0.59

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.9e-21
                    EEEE--GC.....G.CHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHC......HHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaagvhvlapDlpGhGrsdpppldledl......adlaalldelaagggpvvlvGHSlGGalalaaapla.lv 88 
                    +l++HG++s+a++W    ++a ++ ag+ ++ap l GhG  +++p +l+ +      adl +++d  +   +++v++GH++G ++++++a++  ++
     CDO71355.1  32 LLFVHGFPSTAHDWrN--QIAFFSKAGYGIVAPNLLGHG-GSSSPSTLQSYvpsrvcADLIDIIDQAK--VNQAVAIGHDWGSIVSSRLASYYpQR 122
                    79************54..777777777666********6.3455555544234344566677777775..8888**************88888955 PP

                    EE..EEES-..----TTT....S----TTHHHHHHTT-CCCCH..CCH.............S-HSCCCCHHHCCCCHCHCCCGHHHHCC....... CS
  Abhydrolase_6  89 vg..vlldppptalpagl....laaalelllallallrllawl..sre.............plprlfladedadaawrarlarlaalla....... 156
                    ++   +l++   ++ ++l    +a al++ ++  +++ + +wl  + e             +l+  ++  ++    w + la++ al a       
     CDO71355.1 123 FKafAFLAG---GYYPLLagfdIATALAFNKQHFQSELFGYWLflA-EdgakkvadahlesLLS-IWYTADT--SLWKTVLAPPGALKAwlladkk 211
                    555888888...4444444666777777777777777778888542.13455554444443233.4444333..7777777777755551111111 PP

                    ..............HHCHTTCCHHTT-TTGC......EEECTT-C................HHHHCHHCCCHSTTEEET........CE...SSS- CS
  Abhydrolase_6 157 ..............glgllpaaawadlpvpl......lvlggeDp................lvprllerllaqagarlp........vvlpgaGHl 208
                                  +l  ++ + + ++++++      l+  ++D+                +++r + +l+  ++a++         v + ++GH+
     CDO71355.1 212 aplapfitpeektrMLNDWRKTGLGTALSWYkvmtsgLI-SKDDEavnkeklvlsrpvyfaACKRDYVCLAE-PSAKIVrdfcpkatVDMYDTGHW 305
                    111112222222223334445555555555577666544.45555666666665555444433344444444.4444434455566666889**** PP

                    HHHHSHHHH CS
  Abhydrolase_6 209 phleepdev 217
                    ++le++d++
     CDO71355.1 306 VQLEAADKL 314
                    ***777887 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1     1e-12   3.8e-09       3     111 ..      28     133 ..      26     173 .. 0.88
   2 ?    0.2   0.0      0.11   3.8e+02     142     217 ..     257     291 ..     209     307 .. 0.54

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1e-12
  Hydrolase_4   3 pkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd 99 
                   k ++++vHG+ +++    + ++ + ++G+ ++a +  GhG s  + + +    +++++Dl  +++++k +    + + +Gh +G++++ +++  yp+
   CDO71355.1  28 SKPTLLFVHGFPSTAHDWRNQIAFFSKAGYGIVAPNLLGHGGSSsPSTLQSYVPSRVCADLIDIIDQAKVN----QAVAIGHDWGSIVSSRLASYYPQ 121
                  6889***************************************976666666678**********999954....4688******************* PP

  Hydrolase_4 100 kvaglilsaPal 111
                  +++++ + a  +
   CDO71355.1 122 RFKAFAFLAGGY 133
                  ***999888655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
  Hydrolase_4 142 nlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerl 217
                    k + + +                                          P+ +   ++D v+  e+s+++++  
   CDO71355.1 257 VNKEKLVLSR-----------------------------------------PVYFAACKRDYVCLAEPSAKIVRDF 291
                  3333444444.........................................4444444444444444444444433 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.14      39      86 ..      22      69 ..      12     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
  Chlorophyllase 39 tPaeaGtypvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp 86
                     P  +   p +lf+hG+  + +++ + + + +  G+ +vaP+l    +
      CDO71355.1 22 LPGRDASKPTLLFVHGFPSTAHDWRNQIAFFSKAGYGIVAPNLLGHGG 69
                    5677778899********************************987655 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.8e-05      0.28      10      55 ..      22      67 ..      17     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.8e-05
  Chlorophyllase2 10 aPteageYpvllflhGylllnslYsqlLkhiashgfivvapqlykv 55
                      P +  + p llf+hG+  + + +++ ++  +  g+ +vap+l   
       CDO71355.1 22 LPGRDASKPTLLFVHGFPSTAHDWRNQIAFFSKAGYGIVAPNLLGH 67
                     68888889**********999999999**************88763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2364.36
//
Query:       CDO71356.1  [L=860]
Description: hypothetical protein BN946_scf184908.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.034   12.8   5.6      0.056   12.1   5.6    1.2  1  AAA_13          AAA domain
      0.096   13.1  11.1        1.2    9.5   7.7    3.0  3  DUF1690         Protein of Unknown function (DUF1690)
       0.12   11.2   5.5      0.042   12.7   3.0    1.4  2  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain
       0.15   10.9  16.9      0.017   14.0  11.3    1.9  2  Spc7            Spc7 kinetochore protein
       0.22   12.0  27.7      0.035   14.6   8.8    3.6  3  ZapB            Cell division protein ZapB
       0.39   11.1  18.7       0.32   11.4  13.8    2.4  2  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
        1.2    9.3   5.6       0.21   11.7   1.6    1.8  2  MCU             Mitochondrial calcium uniporter
        1.3    7.5   5.1        2.3    6.7   5.1    1.3  1  FapA            Flagellar Assembly Protein A
        1.5    6.7   4.2        2.6    5.9   4.2    1.3  1  V_ATPase_I      V-type ATPase 116kDa subunit family
        6.3    6.9  16.8      0.047   13.7   7.5    2.1  2  FlxA            FlxA-like protein


Domain annotation for each model (and alignments):
>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.6   3.1e-05     0.056     385     448 ..     193     255 ..     184     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
      AAA_13 385 vanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeike 448
                  anl+++ +e+ +kle+ + e+++++ ++ k+k++kle++i++l +el++ +a+ ++lee++k+
  CDO71356.1 193 LANLADQNAELMEKLEKLETESFKAD-QAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKA 255
                 6899**********************.899*******************************987 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.07   1.3e+02       5      63 ..      44     103 ..      41     129 .. 0.82
   2 ?    9.5   7.7   0.00068       1.2      41     112 ..     191     258 ..     184     272 .. 0.72
   3 ?   -1.2   0.1       1.4   2.5e+03      12      29 ..     377     397 ..     366     420 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.07
     DUF1690   5 tpiqfSqslvsqLessketda.sraqalekliqerVaeeLkkLraeeeetlkkfeeklek 63 
                 +pi+++++lv+  + s++ ++  r+ ++e+ ++e+  eeL+ L  +  + +k  e++l+ 
  CDO71356.1  44 SPIHITAHLVTGAALSPDGPSpPRSGSMEEWVEEKSREELSGLLLKADDIIKTRETELSY 103
                 788999999999999999888899******************988888888888877764 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00068
     DUF1690  41 eeLkkLraeeeetlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeeklpeeveeare 112
                 +eL++L ++++e ++k+e kle+e+ k +  +  + +  +l+++i++Lr+ l+++++k   +l+e+ ++a +
  CDO71356.1 191 AELANLADQNAELMEKLE-KLETESFKAD--QAGKRKLRKLEQEIQSLREELDKTQAKGA-ELEEQAKAAAN 258
                 699999666666666665.6777777777..578888899**************777777.66555555433 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.4
     DUF1690  12 slvsqLessketda...sraq 29 
                 +l+s++++ +et++   ++++
  CDO71356.1 377 QLLSKVQELEETNTqiiEQQK 397
                 333333333333332222222 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.0   2.4e-05     0.042     180     245 ..     193     273 ..     185     322 .. 0.78
   2 ?   -3.6   0.0       2.1   3.8e+03     185     203 ..     384     402 ..     362     455 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
  Fmp27_WPPW 180 leeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse...............e 245
                 l++l +q ++l ekle+le++s k d++ k+++++le+ei++l+e+l+  ++   +l+e++++++               +
  CDO71356.1 193 LANLADQNAELMEKLEKLETESFKADQAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAAnaahvqflkeereawR 273
                 578999*****************************************************9987666666665543333221 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.1
  Fmp27_WPPW 185 eqiekleekleelelksek 203
                 e  e++++ +e+++l++e+
  CDO71356.1 384 ELEETNTQIIEQQKLTEER 402
                 2222222222222222222 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  11.3   9.5e-06     0.017     170     264 ..     194     289 ..     185     297 .. 0.83
   2 ?   -0.6   0.2      0.27   4.9e+02     225     253 ..     378     406 ..     371     427 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.5e-06
        Spc7 170 peleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleel..eekieelkeqkseleeeiaeaervleeckgws 264
                  +l  + ael+e+lekl++++ + ++  k +L++l +e+++l +e+++ +++ ael+eq ++   ++ ++ lke+++ ++ +++e+    +   ++s
  CDO71356.1 194 ANLADQNAELMEKLEKLETESFKADQAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAanAAHVQFLKEEREAWRRAVKEKS-ASQVASDIS 289
                 5788999************999999999****************************9998876115678999999999999999654.344445555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.27
        Spc7 225 lqeqleeleekieelkeqkseleeeiaea 253
                 l ++++elee+ +++ eq + +ee++++a
  CDO71356.1 378 LLSKVQELEETNTQIIEQQKLTEERMRAA 406
                 33333333333333333333333333333 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   4.1       0.2   3.6e+02      33      55 ..     192     214 ..     184     230 .. 0.61
   2 ?   14.6   8.8   1.9e-05     0.035      12      63 ..     224     277 ..     222     278 .. 0.90
   3 ?    4.4   2.4     0.029        51      36      63 ..     377     404 ..     373     410 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.2
        ZapB  33 eneelkeenreleeeneqlkeer 55 
                 e ++l+++n+el e++e+l++e 
  CDO71356.1 192 ELANLADQNAELMEKLEKLETES 214
                 55667777777777777777553 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.9e-05
        ZapB  12 kiqkaidtitlLqmeieeLkeeneelkeenrele..eeneqlkeereawqerlk 63 
                 k  k+ ++i++L++e+++ +++ +el+e++++    + ++ lkeereaw++ +k
  CDO71356.1 224 KLRKLEQEIQSLREELDKTQAKGAELEEQAKAAAnaAHVQFLKEEREAWRRAVK 277
                 55677789***********************9999999***********98765 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.029
        ZapB  36 elkeenreleeeneqlkeereawqerlk 63 
                 +l ++ +elee n q  e+++ ++er++
  CDO71356.1 377 QLLSKVQELEETNTQIIEQQKLTEERMR 404
                 6667778888888888888888888876 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  13.8   0.00018      0.32       9      79 ..     192     266 ..     187     271 .. 0.86
   2 ?    1.6   0.2      0.19   3.4e+02       2      32 ..     381     411 ..     375     422 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  Uso1_p115_C   9 eaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekek.........q 79 
                  e a+l d+n++l  +l++l+++  ++ q+      + + ++le+e+++l++el+k++a+ +e +e++k++         +
   CDO71356.1 192 ELANLADQNAELMEKLEKLETESFKADQA-----GKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAanaahvqflK 266
                  67889999999999999999999999999.....8999*****************************9886666665554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.19
  Uso1_p115_C   2 kaseleseaaslkdeneklkaelqslskale 32 
                  k +ele++++++ ++++ ++ +++++++ + 
   CDO71356.1 381 KVQELEETNTQIIEQQKLTEERMRAAQWDAD 411
                  5578888888888888888888888777665 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.6   0.00012      0.21      36      91 ..     205     260 ..     159     266 .. 0.79
   2 ?   -3.3   0.1       4.6   8.2e+03      58      74 ..     384     396 ..     361     415 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                 XXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHH CS
         MCU  36 kqlvkalesalnveeeqlkkereleekleelreelepleekkeeidekAerrtrrl 91 
                 ++l k  +++++++++ ++k r+le+++++lreel++ ++k +e++e+A++ +++ 
  CDO71356.1 205 EKLEKLETESFKADQAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAANAA 260
                 222222333448889999********************************998876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.6
                 HHHHHHHHHHHH-SHHH CS
         MCU  58 eleekleelreeleple 74 
                 elee   ++ e+    +
  CDO71356.1 384 ELEETNTQIIEQ----Q 396
                 111111111111....1 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.1    0.0013       2.3     346     421 ..     193     266 ..     178     289 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
        FapA 346 leeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnk 421
                 l +l ++  +l +k++kl+ ++   + ++  k +l kl+++ ++l+eel + +++ +el+e+ +  +++a+++  k
  CDO71356.1 193 LANLADQNAELMEKLEKLETES--FKADQAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAANAAHVQFLK 266
                 4444444444444444444422..2335566667777777777777777777777777777777775444665444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.2    0.0014       2.6      39     120 ..     193     277 ..     179     309 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
  V_ATPase_I  39 lrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkav..lekakefleee.e 120
                 l  l ++ ++l ++  k e+++ + +++ +++l +le+e+++l eel +++++  +l+++ + + ++ +v  l++ +e  +++ +
  CDO71356.1 193 LANLADQNAELMEKLEKLETESFKADQAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAANAAHVqfLKEEREAWRRAvK 277
                 4444444444444444444445566777788888888888888888888888888888888888888777223444444443322 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   7.5   2.6e-05     0.047      17      86 ..     191     260 ..     187     281 .. 0.85
   2 ?   -2.8   1.8       3.6   6.5e+03      27      48 ..     376     397 ..     373     408 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.6e-05
        FlxA  17 sqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekee 86 
                 +++a+L  Q ++l ++L++l +++ + ++  k +   ++++Iq+l+ ++ + q++ ae ++++++ ++ +
  CDO71356.1 191 AELANLADQNAELMEKLEKLETESFKADQAGKRKLRKLEQEIQSLREELDKTQAKGAELEEQAKAAANAA 260
                 57899******************8888998999*********************9988777776665554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.6
        FlxA  27 knlqkqLkelsesdeltkeekk 48 
                 ++l  +++el e++++  e++k
  CDO71356.1 376 SQLLSKVQELEETNTQIIEQQK 397
                 4444555555555444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.92u 0.35s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 5260.55
//
Query:       CDO71357.1  [L=1257]
Description: hypothetical protein BN946_scf184908.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.28u 0.34s 00:00:01.62 Elapsed: 00:00:00.51
# Mc/sec: 7395.18
//
Query:       CDO71358.1  [L=132]
Description: hypothetical protein BN946_scf184908.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-24   83.9   0.1    8.3e-24   83.5   0.1    1.2  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.1   4.6e-28   8.3e-24       1      72 [.       7      77 ..       7      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 4.6e-28
                EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEE CS
      Cyt-b5  1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGk 72
                t +el++h +k++l+v ++ kVYDv+kf+++hpGg+++il+ aG+Dateaf++v hs++ a+ llk++++G+
  CDO71358.1  7 TYAELKAHSTKESLYVLLHEKVYDVTKFIDEHPGGDEVILAEAGRDATEAFEDVGHSDE-ARALLKDMYIGD 77
                578*****************************************************999.8**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 955.95
//
Query:       CDO71359.1  [L=164]
Description: hypothetical protein BN946_scf184908.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-19   69.6   0.1    3.6e-19   69.2   0.1    1.2  1  Sedlin_N  Sedlin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.1     2e-23   3.6e-19       2     117 ..      13     127 ..      12     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2e-23
    Sedlin_N   2 igkkdnplyelefssskekeekelkeL.nqfilhasLDivedlqwk.....tnnlylgkvdkfeklsvsayvtnskikflllhesssskkkdekikqff 94 
                 +++++ p+ +  f + +       +eL +++i+h+sLD+++++        ++++yl+ ++++e+++v++y+t+ k+k+++ +  +++  +d ++  +f
  CDO71359.1  13 VSPQNHPILIRTFVQGQ-------DELkYHYIAHTSLDVIDERITAaiaskSTECYLNLLYTMEDVAVYGYMTPLKVKIIIALALTDAVVRDADVLTIF 104
                 78888899888888777.......45779*************9888888889*********************************************** PP

    Sedlin_N  95 qevhelyvktlmnPFykvneeir 117
                 + +h+ y + + nPF + n +i+
  CDO71359.1 105 RALHTAYRQSVANPFLRLNAPID 127
                 ********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1181.59
//
Query:       CDO71360.1  [L=840]
Description: hypothetical protein BN946_scf184908.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-35  120.6   0.1    2.9e-34  117.6   0.0    2.7  3  RTP1_C1   Required for nuclear transport of RNA pol II C-term
    0.00099   18.7   0.3     0.0027   17.3   0.3    1.7  1  RTP1_C2   Required for nuclear transport of RNA pol II C-term


Domain annotation for each model (and alignments):
>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   3.3e-38   2.9e-34       1     111 [.     528     655 ..     528     656 .. 0.98
   2 ?   -1.9   0.0      0.41   3.7e+03      15      35 ..     681     701 ..     675     718 .. 0.66
   3 ?   -2.4   0.0       0.6   5.3e+03      10      29 ..     760     779 ..     756     794 .. 0.78

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 3.3e-38
     RTP1_C1   1 lqealkdlqdpllpvrahglvlLrkliekkske.........avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey....... 83 
                 +q+alk lqdpllpvrahgl+lLr+l+++++           + + ++ il++++++++d+dsY++Lna++gL+a++d f ++vl+ L++ y       
  CDO71360.1 528 YQKALKLLQDPLLPVRAHGLMLLRQLVSARKDPsghlsepalEPALVPGILSIFMQSVQDDDSYMFLNAVQGLSAMVDGFGKDVLRNLVNVYsegldgl 626
                 79**************************998669***************************************************************** PP

     RTP1_C1  84 .eeenekeslderlkvGEaLlrvirrlge 111
                  +++++++++d r ++GEaL++virr+g+
  CDO71360.1 627 sASAMSQHDVDMRTRIGEALVQVIRRCGD 655
                 *999************************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.41
     RTP1_C1  15 vrahglvlLrkliekkskeav 35 
                 +r+ +++lL++ ++++    +
  CDO71360.1 681 LRTSAISLLAHCVKTNALAVL 701
                 688999999999998875533 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.6
     RTP1_C1  10 dpllpvrahglvlLrkliek 29 
                  + +p+r  +l+ L+ l+++
  CDO71360.1 760 TKFPPLRRAALHFLSLLANA 779
                 57899999999999887765 PP

>> RTP1_C2  Required for nuclear transport of RNA pol II C-terminus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   3.1e-07    0.0027       6      33 ..     804     831 ..     803     831 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.1e-07
     RTP1_C2   6 yrtLkyVedtDtDdlVReHArdvLEeLe 33 
                 ++tL y+++tD Dd+VR  Ar  +E L+
  CDO71360.1 804 KTTLGYIAATDADDVVRVMARETVEALD 831
                 68***************88888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5699.78
//
Query:       CDO71361.1  [L=539]
Description: hypothetical protein BN946_scf184908.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-06   28.9  10.6    2.1e-06   27.9  10.6    1.5  1  zf-RING_2     Ring finger domain
    5.8e-05   23.0  10.2    0.00011   22.0  10.2    1.5  1  zf-RING_5     zinc-RING finger domain
    0.00014   21.8   6.7    0.00037   20.5   6.7    1.8  1  zf-RING_UBOX  RING-type zinc-finger
    0.00041   20.2  11.1    0.00084   19.2  11.1    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0047   16.7   9.4     0.0098   15.7   9.4    1.5  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      0.009   15.9   9.0      0.019   14.8   9.0    1.6  1  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.021   14.6   8.3      0.049   13.4   8.3    1.7  1  zf-RING_11    RING-like zinc finger
      0.021   15.4   7.0      0.045   14.3   7.0    1.6  1  Striatin      Striatin family
      0.061   13.2  10.5       0.18   11.7  10.5    1.9  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.085   13.0  10.8       0.22   11.7  10.8    1.8  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        1.9    8.2  14.5        4.9    6.9  14.4    1.6  1  ERM           Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9  10.6   1.3e-09   2.1e-06       2      43 ..     445     493 ..     444     494 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.......CPlC 43 
                 +C+ICle++++++ +++ pC H ++reCl+ + +s++        CP C
  CDO71361.1 445 DCGICLEKFQEDHVAVVRPCEHACCRECLASYAASKIAehrypilCPQC 493
                 6********886666677***********99876666677779****** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0  10.2   6.9e-08   0.00011       2      43 ..     446     494 ..     445     495 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.9e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.......ekeavCpiCr 43 
                 C +C ek+++++ +++ +C H +C +Cl  +          +  Cp+C 
  CDO71361.1 446 CGICLEKFQEDHVAVVRPCEHACCRECLASYAaskiaehRYPILCPQCT 494
                 *******************************9999999888999**995 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   6.7   2.3e-07   0.00037       1      31 [.     446     483 ..     446     491 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.3e-07
  zf-RING_UBOX   1 CpIClelft.dP..lvlpCGHtFCreCl..w..elsks 31 
                   C ICle f+ d   +v pC H  CreCl      +   
    CDO71361.1 446 CGICLEKFQeDHvaVVRPCEHACCRECLasYaaSKIAE 483
                   9********733444459**********5413434444 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2  11.1   5.1e-07   0.00084       1      41 []     446     493 ..     446     493 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.1e-07
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC....TSSB-..-TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilks....rkkvk..CPlC 41 
                 C iCle+++e +   + +C+H++C++C+ ++  s    +++ +  CP+C
  CDO71361.1 446 CGICLEKFQEDHvaVVRPCEHACCRECLASYAASkiaeHRY-PilCPQC 493
                 99*******99989999****************99985333.347**** PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   9.4     6e-06    0.0098       5      45 ..     446     495 ..     444     499 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6e-06
                 -TTTSSS...BS-EEETTEEEEEE-HHHHHHHHH.......TT-B-TTT-- CS
  zf-C3HC4_3   5 CviCler...prnvvllpCgHlvlCeeCaekllk.......rkkkCpiCrr 45 
                 C iCle+   +  +v+ pC H  +C eC+ ++ +           Cp C +
  CDO71361.1 446 CGICLEKfqeDHVAVVRPCEHA-CCRECLASYAAskiaehrYPILCPQCTA 495
                 ******75324457888*****.********98888887766778999975 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   9.0   1.2e-05     0.019       1      39 [.     446     496 ..     446     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
  Prok-RING_4   1 CvlCgeq...ekkailepCgHlvCkeCfdskdls.........sCPlCqrr 39 
                  C +C e+   +++a++ pC+H  C+eC+ s   s          CP C  +
   CDO71361.1 446 CGICLEKfqeDHVAVVRPCEHACCRECLASYAASkiaehrypiLCPQCTAN 496
                  778887777799****************99977777788888889999765 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   8.3     3e-05     0.049       1      23 [.     445     467 ..     445     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHt 23 
                 +C ICLe+f+++   ++ pC H+
  CDO71361.1 445 DCGICLEKFQEDHVAVVRPCEHA 467
                 8*********************6 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   7.0   2.8e-05     0.045      30     138 ..     271     397 ..     269     435 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-05
    Striatin  30 mkarIakLegerrgaenlkkdlvrrikmLEyalkqerakylkl.....kegtsaakenkkkekeeeeaeeeekseeeskskekksakeslkks...... 117
                 ++ar+ +Le e+++  n kk l + ++ L+y l +     +k       +  + ++++  +++++  ++ e++ +e+s+s+++++ +     s      
  CDO71361.1 271 IQARVRELELENKEVTNEKKRLAQEVRALQYDLLRMDDALQKAkamaeRYRIEVSSRSYAQRESSRYNAPEHPDDESSSSQPDSTYS-----Syfspgn 364
                 59******************************8777654333322222233333333333333333333333332222222222222.....2566679 PP

    Striatin 118 ............eaeeesesekrdeksrkksrq 138
                             +++++++s++++++sr++ +q
  CDO71361.1 365 lfswrmvggngrSQKQSNASSSKQQASRESEKQ 397
                 999*****9998666677777777777777666 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  10.5   0.00011      0.18       2      32 ..     446     478 ..     445     493 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
  zf-C3HC4_2   2 CpiCldmlkdpsvvt..pCgHvfCqkCilrsLe 32 
                 C iCl+ +++  v    pC+H  C++C++ +  
  CDO71361.1 446 CGICLEKFQEDHVAVvrPCEHACCRECLASYAA 478
                 ********986433345**********998533 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  10.8   0.00014      0.22       1      42 []     446     493 ..     446     493 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
  zf-C3HC4_4   1 CPiCldYLek.Pvsl..eCGhsfClsCisslqkepdgeq...llCplC 42 
                 C iCl+ +++  v +  +C+h +C +C+ s+  ++ +e+    lCp+C
  CDO71361.1 446 CGICLEKFQEdHVAVvrPCEHACCRECLASYAASKIAEHrypILCPQC 493
                 899998776524444448*************9999888778899**** PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  14.4     0.003       4.9      81     176 ..     272     397 ..     258     439 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.003
         ERM  81 erklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekllealstpsks....eseenveeseteeeeensee................... 156
                 ++++re ele +++++e++r ++e++ L+ +l+++ +a+++ak+   +   + s++     +++  +++e+ ++e++s++                   
  CDO71361.1 272 QARVRELELENKEVTNEKKRLAQEVRALQYDLLRMDDALQKAKAMAERYRIEVSSRsyaqRESSRYNAPEHPDDESSSSQpdstyssyfspgnlfswrm 370
                 6789999*******************************9999955544433332223433223333344443333333335677777888888877777 PP

         ERM 157 ...............esaeletdeveklsleieee 176
                                +         +++s+e+e++
  CDO71361.1 371 vggngrsqkqsnassS--------KQQASRESEKQ 397
                 7777765433222220........22333444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1598  (0.0891293); expected 358.6 (0.02)
Passed bias filter:                      763  (0.0425568); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 3398.26
//
Query:       CDO71362.1  [L=578]
Description: hypothetical protein BN946_scf184908.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-46  158.1   0.0    3.3e-46  157.3   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.8e-35  120.0   0.1    3.3e-34  117.5   0.1    2.2  2  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    9.7e-12   45.1   0.3    2.4e-11   43.9   0.3    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0019   18.3   0.1      0.016   15.3   0.1    2.3  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0041   16.7   0.4      0.014   15.1   0.0    2.1  2  PAM2         Ataxin-2 C-terminal region
  ------ inclusion threshold ------
        0.2   10.3   2.0       0.27    9.9   2.0    1.1  1  Ndc1_Nup     Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.0   1.1e-49   3.3e-46       1     188 [.     132     350 ..     132     419 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 1.1e-49
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgeka.eeerv............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++ni++ighvD+GK+T+ +++ly +g+++k+++++ e e+             lD++++Er++g T+++  +++e  t++++++++D+PGH+ F+  
  CDO71362.1 132 KEHLNIVFIGHVDAGKSTMGGNILYLCGMVDKRTMEKyEREAKeagrdswylswaLDSTPQERAKGKTVEVGRAYFE--TDSRRYTILDAPGHKTFVPS 228
                 689*********************************95223337799******************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST.....HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEE CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl.....kaelkeiveevkqklsrkeeklekygekgekevpvvf 172
                 +i g++++D+a+lv++a++G          qt+e++ l+++ gv+ +iv+iNKmD++     ka+++ei++++   +      +++ g++ +++ ++++
  CDO71362.1 229 MISGAAQADVAILVISARKGefetgfeKGGQTREHIMLVKTAGVQkLIVVINKMDEPtvawsKARYDEIKDKLT-PF------IKASGFNVKNDLTFIP 320
                 *************************9999****************************99999999999999998.77......8999999999****** PP

                 EBTTTTBTHH..............HHHHHH CS
    GTP_EFTU 173 gSalkgegvk..............tlleal 188
                 +Sa++g ++k              +lle l
  CDO71362.1 321 VSAYTGANLKdriskdvcdwwdgpSLLEHL 350
                 *******99977777777777776455544 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.88   2.6e+03       9      28 ..     235     255 ..     232     291 .. 0.64
   2 !  117.5   0.1   1.1e-37   3.3e-34       1     111 [.     449     557 ..     449     558 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.88
                  EEEEEESSS...SS-BSTT-E CS
  GTP_EFTU_D3   9 eAqvyileke.rhtpitagYr 28 
                  +A v+il    r++++ +g++
   CDO71362.1 235 QADVAILVISaRKGEFETGFE 255
                  577777777778999988886 PP

  == domain 2  score: 117.5 bits;  conditional E-value: 1.1e-37
                  --EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEEC CS
  GTP_EFTU_D3   1 sikphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiRe 98 
                  +++++++feAq++il +  +++i+agY++v++i+t  ++++ v+Ll+  dk t+++s+k p+f+k+G+++++ +e+ +p+++e++ +ypqlGrF++R+
   CDO71362.1 449 PVHAVRQFEAQLAILDH--KNIICAGYSAVMHIHTLAEEVTLVALLHYFDKATGRKSRKPPQFAKKGQKIVALIETAEPVCVERFVDYPQLGRFTLRD 544
                  57899************..******************************************************************************* PP

                  TTCEEEEEEEEEE CS
  GTP_EFTU_D3  99 ggrTvaaGvvtei 111
                  +g+T+a+G++t++
   CDO71362.1 545 EGKTIAIGKITKL 557
                  ***********97 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.3     8e-15   2.4e-11       1      74 []     376     444 ..     376     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8e-15
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE.EESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe.dedeavaganaGvivaikgledaiivGdtlt 74 
                  Gtv+ g+v+sG ++kGd++ +++n     + + ++++++ ++e ++d+a +g+n+ + v++++ ed i  G +lt
   CDO71362.1 376 GTVIVGKVESGHIRKGDTLLLMPN-----KNLIEVTAIYNEMEeEVDTAFCGDNIRIRVRGVDDED-ISPGFVLT 444
                  9********************775.....458*********998999*******************.*****996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.2e-06     0.016       2     114 .]     137     281 ..     136     281 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.2e-06
                 EEEEESTTSSHHHHHHHHH..............T.................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt..............g.................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 ++++G+  +GKSt+   ++              +                 +    ++ +g+T ++ ++ ++++ ++++++D pG  +       +   
  CDO71362.1 137 IVFIGHVDAGKSTMGGNILylcgmvdkrtmekyEreakeagrdswylswalDSTPQERAKGKTVEVGRAYFETDSRRYTILDAPG-HK-----TFVPSM 229
                 899***********888775555555555554404555555666666553334566777799999988888888899********.33.....334555 PP

                 HHHHHCTSEEEEEEETT.........TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  70 flaleeadlillvvdas.........eeklkpldeeleelleeakkplilvlnk 114
                 +    +ad+++lv++a+         ++   + +e++  +++   ++li+v+nk
  CDO71362.1 230 ISGAAQADVAILVISARkgefetgfeKG--GQTREHIMLVKTAGVQKLIVVINK 281
                 5556679*******99855554443211..222233322222244567777776 PP

>> PAM2  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.5e-06     0.014       3      16 ..       1      14 [.       1      14 [. 0.93
   2 ?   -2.5   0.1       1.8   5.5e+03      13      16 ..     225     228 ..     223     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.5e-06
                ---SSTTSS----T CS
        PAM2  3 kSkLNPnAkEFVPs 16
                +SkLN nA EFVP+
  CDO71362.1  1 MSKLNINAFEFVPG 14
                59***********5 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
                 ---T CS
        PAM2  13 FVPs 16 
                 FVPs
  CDO71362.1 225 FVPS 228
                 ***8 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0     9e-05      0.27     362     459 ..      21     118 ..      12     197 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9e-05
    Ndc1_Nup 362 pskapknkasapvkelprlsksplkkk.ddeifgnsltaeaspkssssskegvekalsslakspgqs.psptarlsprarkllekaksrllskeqkeal 458
                 ++++p++ + +p+++ p++ ++ +  + + +i g  ++++++p ++s++++++ +++s   +s  ++  ++++ + p++  +le+ak+++    q+ + 
  CDO71362.1  21 QQQQPAQPPLQPIERPPQTEAPAPPPTiSLNIGG--SKPTPKPTPPSTRPSSPPSTISLNIASSAKTsAKASSAAPPSKTLTLERAKTDTAAVAQEVRN 117
                 2244566667777777777644444435555655..666666777777777777777766666655544344444477777888777776663333322 PP

    Ndc1_Nup 459 s 459
                  
  CDO71362.1 118 A 118
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4032.72
//
Query:       CDO71363.1  [L=1099]
Description: hypothetical protein BN946_scf184908.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-37  127.5   8.5    4.3e-14   52.1   0.4    4.3  4  SH3_9           Variant SH3 domain
    1.8e-37  126.7   4.9    4.2e-15   55.1   0.1    4.2  4  SH3_1           SH3 domain
    9.5e-28   95.7   0.2    1.4e-09   37.4   0.0    4.5  4  SH3_2           Variant SH3 domain
    4.1e-07   30.2   5.1      0.016   15.5   0.5    3.6  3  SH3_3           Bacterial SH3 domain
    1.9e-06   28.2   0.0       0.02   15.3   0.0    2.6  2  hSH3            Helically-extended SH3 domain
    2.9e-05   24.1   0.2       0.13   12.4   0.0    3.6  3  SH3_10          SH3 domain
    0.00011   21.9   0.1    0.00033   20.4   0.1    1.8  1  SHD1            SLA1 homology domain 1, SHD1
    0.00022   21.1   0.0    0.00043   20.2   0.0    1.3  1  SAM_4           SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
        3.1    6.2  15.9        5.5    5.4  15.9    1.3  1  Macoilin        Macoilin family


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.2   1.8e-12   3.6e-09       1      49 []      14      68 ..      14      68 .. 0.87
   2 !   40.8   0.3   7.1e-14   1.4e-10       1      49 []      78     128 ..      78     128 .. 0.94
   3 !   52.1   0.4   2.2e-17   4.3e-14       1      49 []     355     404 ..     355     404 .. 0.98
   4 ?   -0.4   0.0      0.55   1.1e+03      13      24 ..     638     649 ..     632     658 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.8e-12
       SH3_9  1 Alypye..preddeLsLqrGDvitvieesedgWlegs...l.tGrtGlvPanyve 49
                A y+ye  p+ +de+ + +++ ++++e+ +d+W+ ++     +G  GlvPa+yve
  CDO71363.1 14 ASYDYEpqPDAEDEIAIKENQLLLLLERVDDDWWKVKvksEeEGPAGLVPAAYVE 68
                66999944566679**********************876527************7 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 7.1e-14
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegs.l..tGrtGlvPanyve 49 
                 +ly+ye+ + +eL + +++++ v ++ +++Wl++s +  +G+ G+vP nyve
  CDO71363.1  78 VLYDYEAAQSTELTVKEDEILNVYDR-DEDWLLVSsQthEGKVGYVPGNYVE 128
                 89**********************99.9******96258************7 PP

  == domain 3  score: 52.1 bits;  conditional E-value: 2.2e-17
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyve 49 
                 +ly+++++ +deL +++G++++v+e++++ W+ +++ +G  G+vPa+yve
  CDO71363.1 355 VLYDFTADGEDELTVREGETLLVLEKDSEEWWKCRNaDGAEGVVPASYVE 404
                 89***********************************************7 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.55
       SH3_9  13 LsLqrGDvitvi 24 
                 L L++GD+i+v 
  CDO71363.1 638 LGLREGDIIRVK 649
                 779******995 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   4.9e-12   9.8e-09       1      47 [.      13      63 ..      13      64 .. 0.90
   2 !   35.7   0.0   2.4e-12   4.7e-09       1      47 [.      77     123 ..      77     124 .. 0.95
   3 !   55.1   0.1   2.1e-18   4.2e-15       1      48 []     354     400 ..     354     400 .. 0.96
   4 ?    0.0   0.0      0.33   6.6e+02      13      24 ..     637     648 ..     631     653 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 4.9e-12
                EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTS..TEEEEEE CS
       SH3_1  1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgt..gkeGliP 47
                +A YDYe++   +dE+ +k++  + +le+++d+Wwk+++k+   g  Gl+P
  CDO71363.1 13 RASYDYEPQPdaEDEIAIKENQLLLLLERVDDDWWKVKVKSEeeGPAGLVP 63
                699******999****************************97666666777 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 2.4e-12
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.TEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliP 47 
                 ++lYDYea +s EL+ k+++++ v +++ed W+ + +++  gk+G++P
  CDO71363.1  77 KVLYDYEAAQSTELTVKEDEILNVYDRDED-WLLVSSQTHeGKVGYVP 123
                 68************************9888.*******999******9 PP

  == domain 3  score: 55.1 bits;  conditional E-value: 2.1e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 ++lYD++a  +dEL+ ++G+++ vlek+ ++Wwk+r+ + g eG +P+
  CDO71363.1 354 VVLYDFTADGEDELTVREGETLLVLEKDSEEWWKCRNAD-GAEGVVPA 400
                 68************************************9.69*****6 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.33
                 BXEBSTTEEEEE CS
       SH3_1  13 ELsfkkGDviiv 24 
                  L +++GD+i v
  CDO71363.1 637 TLGLREGDIIRV 648
                 5899******98 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.3e-07     0.001       3      56 ..      13      69 ..      11      70 .. 0.85
   2 !   30.5   0.0   1.1e-10   2.2e-07       2      56 ..      76     129 ..      75     130 .. 0.90
   3 !   37.4   0.0   7.2e-13   1.4e-09       2      56 ..     353     405 ..     352     406 .. 0.95
   4 ?    3.6   0.0     0.028        55       9      27 ..     631     649 ..     626     666 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.3e-07
                EESS-B-SCGCCB..--B-TTEEEEEE..EEEECTTEEEEEE.C...CCEEEEEGCGEEE CS
       SH3_2  3 raiedyvgedkse..LsfkkGdvikvlslgskdsdgwwegev.g...GrvGlfPsslvee 56
                ra  dy++++  e  + +k+++++ +l   ++ +d+ww++ v     G  Gl+P  +ve+
  CDO71363.1 13 RASYDYEPQPDAEdeIAIKENQLLLLL---ERVDDDWWKVKVkSeeeGPAGLVPAAYVEP 69
                667799997777778************...99999*****9952455888********98 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1.1e-10
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE...CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev...gGrvGlfPsslvee 56 
                 v+++ dy+++  +eL+ k+++++ v+     ++++w ++++    G+vG++P ++vee
  CDO71363.1  76 VKVLYDYEAAQSTELTVKEDEILNVY----DRDEDWLLVSSqthEGKVGYVPGNYVEE 129
                 8999**********************....455599999996666***********98 PP

  == domain 3  score: 37.4 bits;  conditional E-value: 7.2e-13
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslvee 56 
                 ++++ d+++  ++eL+ ++G+++ vl   +kds++ww++++ +G  G++P s+ve 
  CDO71363.1 353 AVVLYDFTADGEDELTVREGETLLVL---EKDSEEWWKCRNaDGAEGVVPASYVEL 405
                 57889*********************...*************************85 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.028
                 -SCGCCB--B-TTEEEEEE CS
       SH3_2   9 vgedkseLsfkkGdvikvl 27 
                 + +  + L +++Gd+i+v 
  CDO71363.1 631 TESTMRTLGLREGDIIRVK 649
                 5667788**********94 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.011        21      22      54 ..      33      67 ..      19      68 .. 0.69
   2 !   15.5   0.5   7.8e-06     0.016      18      55 .]      91     128 ..      91     128 .. 0.92
   3 !    9.3   0.2   0.00066       1.3      18      55 .]     368     404 ..     363     404 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.011
       SH3_3 22 GekVevleetgggeWykvrtddgte...Gwvssgyl 54
                ++ + +le+++++ W+kv+  + +e   G v + y+
  CDO71363.1 33 NQLLLLLERVDDD-WWKVKVKSEEEgpaGLVPAAYV 67
                5555678999998.*999444444566677777776 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7.8e-06
       SH3_3  18 tlpyGekVevleetgggeWykv..rtddgteGwvssgyls 55 
                 t++  e ++v +++++  W+ v  +t+ g++G+v + y++
  CDO71363.1  91 TVKEDEILNVYDRDED--WLLVssQTHEGKVGYVPGNYVE 128
                 688899**********..****999999999******986 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00066
       SH3_3  18 tlpyGekVevleetgggeWykvrtddgteGwvssgyls 55 
                 t+  Ge++ vle++ ++ W+k r+ dg eG v ++y++
  CDO71363.1 368 TVREGETLLVLEKDSEE-WWKCRNADGAEGVVPASYVE 404
                 6889********99999.************99999985 PP

>> hSH3  Helically-extended SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0005      0.99      30      71 ..      87     129 ..      74     133 .. 0.82
   2 !   15.3   0.0     1e-05      0.02      29      69 ..     363     403 ..     354     408 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0005
        hSH3  30 gkdLpvkrgeildviqktddkkvlc.rneeGkygyvlrsalle 71 
                 + +L+vk+ eil+v  + +d  ++  + +eGk gyv+ +++ e
  CDO71363.1  87 STELTVKEDEILNVYDRDEDWLLVSsQTHEGKVGYVPGNYVEE 129
                 679************999998888624579******9999866 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1e-05
        hSH3  29 ggkdLpvkrgeildviqktddkkvlcrneeGkygyvlrsal 69 
                 g+ +L+v++ge+l v++k +++   crn +G  g v+ s++
  CDO71363.1 363 GEDELTVREGETLLVLEKDSEEWWKCRNADGAEGVVPASYV 403
                 7889********************************99987 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011        23      24      60 ..      26      65 ..      14      68 .. 0.83
   2 ?    1.9   0.0      0.12   2.4e+02      10      57 ..      70     119 ..      66     125 .. 0.64
   3 !   12.4   0.0   6.4e-05      0.13      24      59 ..     365     400 ..     339     403 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
      SH3_10 24 aevsiekgeevtLldnsdrekWkVqtss...GaemtvPgv 60
                +e+ i++++ + Ll+  d+  WkV+  s   G    vP++
  CDO71363.1 26 DEIAIKENQLLLLLERVDDDWWKVKVKSeeeGPAGLVPAA 65
                5899********************9777445777788876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
      SH3_10  10 gepia.veALcdykqa...evsiekgeevtLldnsdrekWkVqtssGaemtv 57 
                  epi+ v+ L dy+ a   e +++++e + + d  ++e W + +s+++e +v
  CDO71363.1  70 AEPIEvVKVLYDYEAAqstELTVKEDEILNVYD--RDEDWLLVSSQTHEGKV 119
                 567652578899988754466777777777666..56799998777554443 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 6.4e-05
      SH3_10  24 aevsiekgeevtLldnsdrekWkVqtssGaemtvPg 59 
                 +e ++++ge++ +l+  ++e Wk ++ +Gae  vP+
  CDO71363.1 365 DELTVREGETLLVLEKDSEEWWKCRNADGAEGVVPA 400
                 4899*******************************7 PP

>> SHD1  SLA1 homology domain 1, SHD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.6e-07   0.00033      45      66 ..     532     553 ..     530     554 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-07
        SHD1  45 aVpvekmskeDleyvekvtgks 66 
                 +Vp+ekms+eDl+yvek+t+++
  CDO71363.1 532 QVPAEKMSQEDLRYVEKLTKQK 553
                 69*****************986 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.2e-07   0.00043       8      67 ..     593     651 ..     591     658 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.2e-07
       SAM_4   8 tsewiqffkeagipaglavnyavsfvdnriqknmlldlskeimnelgitvvgdiiailkh 67 
                 t +w +ff +ag       +ya +f  ++i+ ++l d++   m  lg+   gdii + k 
  CDO71363.1 593 TIDWFEFFLNAGCDVDDCTKYATAFERDKIDEAILPDITESTMRTLGLR-EGDIIRVKKA 651
                 679********************************************97.59**998775 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  15.9    0.0027       5.5     231     420 ..     418     660 ..     395     691 .. 0.40

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0027
    Macoilin 231 pvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnk 329
                 ++a s+  ++ + ++++++ +e e+ e++ +++ +r+ +k++ e+ ++v + + e+e+++ + + ++ +++e  + e   +++ + +++++++ ss   
  CDO71363.1 418 SQAASQAAAAAAAEQAAKEAAEREEAERRAAEERERERKKREAEQRDRVAAAAAEEEHKARERERQKQKEKERAAAEAAAQKKREEEERAAAQASS--- 513
                 444444444444445555555555555544444443333333333455555555555554444444433333333333322222222222222222... PP

    Macoilin 330 nskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaaen........................................... 385
                 +++  ++gs + s+s +++  +++ s+ +    ++  kqk+++     ++ d  +n                                           
  CDO71363.1 514 SKQPRTSGSQSRSSSDARQVPAEKMSQEDLRYVEKLTKQKATSAP---RKSDDDDNmplserrkslvpgaaasakpppkkgptidwfefflnagcdvdd 609
                 112222223333333333333333333333333333344332111...111111112223333333333333333333333333333333333333333 PP

    Macoilin 386 ................slpnnqlskkdalvrLeadikkLkaeLqasrqteq 420
                                 +lp+ + s+   l   e+di ++k  +++ + + +
  CDO71363.1 610 ctkyataferdkideaILPDITESTMRTLGLREGDIIRVKKAIEQRKPKSD 660
                 333333333333333345555555555565556666666666655443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2306  (0.128618); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                       278  (0.0155056); expected 17.9 (0.001)
Passed Fwd filter:                        93  (0.00518713); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.91u 0.47s 00:00:02.38 Elapsed: 00:00:00.66
# Mc/sec: 5058.39
//
Query:       CDO71364.1  [L=1924]
Description: hypothetical protein BN946_scf184908.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-72  240.9   0.1    1.6e-71  239.8   0.1    1.6  1  Sec7      Sec7 domain
    3.7e-45  153.7   4.3    3.7e-45  153.7   4.3    3.7  4  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
    1.5e-34  117.7  10.7    5.3e-34  115.9   0.1    5.6  7  DUF1981   Domain of unknown function (DUF1981)
    1.6e-21   76.8   6.7    2.5e-20   72.9   0.1    3.7  4  DCB       Dimerisation and cyclophilin-binding domain of Mon2
     0.0094   16.1   0.7        1.2    9.6   0.0    4.8  5  HEAT      HEAT repeat
  ------ inclusion threshold ------
      0.071   13.2   1.1        5.8    7.0   0.0    3.1  3  DUF1539   Domain of Unknown Function (DUF1539)


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   0.1   5.4e-75   1.6e-71       1     183 []     846    1030 ..     846    1030 .. 0.97

  Alignments for each domain:
  == domain 1  score: 239.8 bits;  conditional E-value: 5.4e-75
                  HHHHHHHHHHHHHH-HHHHHHHHHHCCCC.TSSHHHHHHHHHHTCCS-HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SS CS
        Sec7    1 rkklleeaaekFnkkpkkgikyliekgll.eedpksiakflketpgldkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgE 96  
                  +k++l e+++kFn kpk+gi++lie+g++ +++pk ia+fl et+gl+k+++Geylg+ +e n+ ++++fvd++d+s++++++AlR+fl+ frlpgE
  CDO71364.1  846 KKTTLLEGIKKFNFKPKRGIDFLIETGFIpSREPKTIARFLLETDGLNKAAIGEYLGEGDEENIAIMHAFVDMLDLSNMPFVDALRSFLQAFRLPGE 942 
                  588999***********************6677**************************************************************** PP

                  HHHHHHHHHHHHHHHHHTT.CTCG-SHHHHHHHHHHHHHHHHHHC-TTSCCS--HHHHHHCTTTTBTTB---HHHHHHHHHHHHHS-- CS
        Sec7   97 aqkierilekFaekyfeqn.pevfenadavfvLaysiimLntdlhnpqvkkkmtledFiknnrgindgkdlpeefLeeiYdsIkeeei 183 
                  aqki+r++ kFae+y+++n  + f+nad+++vLays+imLntd+h+pqvk++mt++ Fi nn+gindg+dlp +fL++iYd+I ++ei
  CDO71364.1  943 AQKIDRFMLKFAERYIATNaDHPFANADTAYVLAYSTIMLNTDAHSPQVKQRMTKQGFIANNKGINDGQDLPVDFLNAIYDDIVNNEI 1030
                  ****************85525779**************************************************************98 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2     0.093   2.8e+02      27      63 ..     320     358 ..     306     375 .. 0.78
   2 !  153.7   4.3   1.2e-48   3.7e-45       2     156 ..     521     690 ..     520     692 .. 0.95
   3 ?   -2.2   0.1       1.2   3.5e+03      71     135 ..    1374    1394 ..    1273    1419 .. 0.55
   4 ?   -0.9   0.4      0.45   1.4e+03      24      72 ..    1578    1624 ..    1554    1669 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.093
      Sec7_N  27 slaersktfsLeLlesvlsn..hgdvfrkhpellqllkq 63 
                 + ++  +t+sL++++++ls   +++v+ ++++ll+++++
  CDO71364.1 320 HNESTPETVSLQIVKALLSLvlSPTVLVHQSSLLKAVRT 358
                 56788999*******999972256899999999999996 PP

  == domain 2  score: 153.7 bits;  conditional E-value: 1.2e-48
      Sec7_N   2 akDaflvfrdLcklinsaks....kpkfl.slaersktfsLeLlesvlsnhgdvfr............khpellqllkqklcplLlknlsespsfpvfe 83 
                 +kDaflvfr+Lckl  ++k+    +++ l s+a+rsk++sL+L+  +l++h+++f             + + ++q+  q+lc +L++n+  sp+++vfe
  CDO71364.1 521 IKDAFLVFRALCKL--TMKPlnseSERDLkSHAMRSKLLSLHLVLMILESHMPIFVspsaiiyssssnEATPFIQAANQYLCLCLSRNA-VSPVPQVFE 616
                 79************..78988765355566*************************************999*******************.********* PP

      Sec7_N  84 rslrivllLlkkfrseLktEievflsllililles.dsslwqrvlaLeilrrlcsdpqllvelylnYDcdeeak 156
                 +s++i++ +l+ +r++Lk+Eiev+l++++ ++le+ +s+l+q+++++ +l+rlc+dpq+lve+ylnYDcd ea+
  CDO71364.1 617 ISVEIFWRVLSGLRTKLKKEIEVLLHEIFIPILEMkTSTLKQKAVIVSMLQRLCQDPQALVEIYLNYDCDSEAA 690
                 ***********************************89999******************************9875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
      Sec7_N   71 knlsespsfpvferslrivllLlkkfrseLktEievflsllilillesdsslwqrvlaLeilrrl 135 
                  +++                                             +s+   r ++L++l+++
  CDO71364.1 1374 TMI-H-------------------------------------------NSNPDVRDMVLQCLQQM 1394
                  222.3...........................................33444444444444443 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.45
      Sec7_N   24 kflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlkn 72  
                  +  ++++   t+ ++ l ++++ ++  f++ +++l+ l + lc ++++ 
  CDO71364.1 1578 E--DMSVWLSTTMIQALRNLIDLYTFYFETLERFLDGLLDLLCVCICQE 1624
                  2..4566667777888889999999999999999999988888887764 PP

>> DUF1981  Domain of unknown function (DUF1981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.8   5.3e+03      59      83 ..     238     262 ..     236     267 .. 0.61
   2 ?    1.5   0.0     0.091   2.7e+02      38      66 ..    1184    1212 ..    1162    1223 .. 0.74
   3 ?    0.5   0.2      0.19   5.6e+02      21      66 ..    1281    1326 ..    1279    1334 .. 0.86
   4 !  115.9   0.1   1.8e-37   5.3e-34       1      83 [.    1351    1433 ..    1351    1434 .. 0.98
   5 ?   -3.6   0.0       3.6   1.1e+04      21      47 ..    1514    1540 ..    1509    1544 .. 0.77
   6 ?   -1.0   0.0      0.54   1.6e+03      39      53 ..    1634    1648 ..    1619    1661 .. 0.83
   7 ?    0.2   0.1      0.23     7e+02      33      50 ..    1724    1741 ..    1717    1742 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
     DUF1981  59 ifgvltaaakeeneslvrlafqilk 83 
                 if+ l++a + +ne+l+  ++++++
  CDO71364.1 238 IFEPLRLACETRNEKLMIASLDCIS 262
                 5666666666666666666666654 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.091
     DUF1981   38 lecveqliqsraeniksGWktifgvltaa 66  
                  ++ +  +  ++++++k  W+ +++++++ 
  CDO71364.1 1184 IKTLLDIAVTEGNHLKASWREVLTCVSQL 1212
                  4445556667999********99998876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.19
     DUF1981   21 FeeimsnnssaeirelvlecveqliqsraeniksGWktifgvltaa 66  
                  +eei s+  s++ r + l+ + ++   +++ i+  W +++ +l+  
  CDO71364.1 1281 WEEIQSSGLSQHPRLFSLQKLVEISYYNMNRIRLEWSNMWDILGEH 1326
                  6788888888889999999999999999**************9865 PP

  == domain 4  score: 115.9 bits;  conditional E-value: 1.8e-37
     DUF1981    1 kflekeelsnfkfQkefLkPFeeimsnnssaeirelvlecveqliqsraeniksGWktifgvltaaakeeneslvrlafqilk 83  
                  +flekeel++fkfQk+fL+PFe++m +ns+ ++r++vl+c++q+iq+r++n++sGW+t+f v++aa+k   e+++++af+i++
  CDO71364.1 1351 RFLEKEELPHFKFQKDFLRPFEYTMIHNSNPDVRDMVLQCLQQMIQARVHNLRSGWRTMFAVFSAASKAATERIANSAFEIVT 1433
                  69*******************************************************************************86 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 3.6
     DUF1981   21 Feeimsnnssaeirelvlecveqliqs 47  
                  F +++ n ++ e+r l l+++ + +++
  CDO71364.1 1514 FYDVIMNGEDLEVRRLALDSLFSTLKT 1540
                  666777899999****99998876665 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.54
     DUF1981   39 ecveqliqsraenik 53  
                  +c++ql++s++++++
  CDO71364.1 1634 SCLQQLLESNVKKLS 1648
                  8**********9996 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.23
     DUF1981   33 irelvlecveqliqsrae 50  
                   r+++++cv ql+  + +
  CDO71364.1 1724 FRQIIVKCVLQLLLIETT 1741
                  699*********988766 PP

>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.1   8.5e-24   2.5e-20      23     174 ..     210     390 ..     189     394 .. 0.83
   2 ?   -0.9   0.2      0.39   1.2e+03      49      89 ..     636     672 ..     603     705 .. 0.59
   3 !    5.2   0.1    0.0049        15      54     113 ..    1362    1422 ..    1339    1485 .. 0.67
   4 ?   -3.1   0.0       1.8   5.3e+03      69     109 ..    1622    1664 ..    1585    1668 .. 0.62

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 8.5e-24
         DCB  23 rkhskvkeasekgilkLktikssseeeeqslaeas.....eeilkPlllacetknpkivqiaLgslqrLisheviseea.................... 96 
                 +++s++++++++++  +++                      ei++Pl lacet+n k++  +L+++ +Lis++   e++                    
  CDO71364.1 210 KRSSPLRDSVQRALEMVRSG--------------QggdrpREIFEPLRLACETRNEKLMIASLDCISKLISYSFFAETSstpqvpsspppspapnsrhs 294
                 33444444444444444443..............03334489**********************************88888999999999999999999 PP

         DCB  97 ..............iskiietlwkllelgve..ielkvLqtllllvttss.vvhgdtlakalvlCfrL.hfskdnvvqntAaAtlrQlvsvvFeRv 174
                               ++ +++t++++++ ++   + l+++++ll+lv + +  vh+++l+ka+++ +++  +s d+v+q  A+  l+Q+v++vF R 
  CDO71364.1 295 msngsqsslpqpslVDLVVHTITSCHNESTPetVSLQIVKALLSLVLSPTvLVHQSSLLKAVRTVYNIfLLSVDPVNQMVAQGGLTQMVNHVFARC 390
                 999999*******9************9976569*****************9*****************7778899*******************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
         DCB  49 eeqslaeaseeilkPll.lacetknpkivqiaLgslqrLish 89 
                 e + l    +ei+ P+l +  +t ++k v +++  lqrL + 
  CDO71364.1 636 EIEVL---LHEIFIPILeMKTSTLKQKAVIVSM--LQRLCQD 672
                 22233...3456666542667777888777764..8888764 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0049
         DCB   54 aeaseeilkPlllac.etknpkivqiaLgslqrLishevis.eeaiskiietlwkllelgve 113 
                  +   +++l+P+     +  np + ++ L++lq++i+ +v +  +  +++ + + ++ ++++e
  CDO71364.1 1362 KF-QKDFLRPFEYTMiHNSNPDVRDMVLQCLQQMIQARVHNlRSGWRTMFAVFSAASKAATE 1422
                  33.4999****988768999****************99877444466666666666666666 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.8
         DCB   69 etknpkivqiaLgslqrLishev..iseeaiskiietlwklle 109 
                     n  +  i  ++lq+L++ +v  +s  + +++ +t++kl+ 
  CDO71364.1 1622 CQENDTLARIGTSCLQQLLESNVkkLSPARWERVATTFVKLFR 1664
                  4456667777888888887665422666677777777777765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.65   1.9e+03       1      16 [.     662     677 ..     662     677 .. 0.85
   2 ?   -2.8   0.0         4   1.2e+04      12      28 ..    1333    1349 ..    1333    1349 .. 0.88
   3 !    9.6   0.0    0.0004       1.2       8      29 ..    1375    1396 ..    1368    1397 .. 0.89
   4 ?   -3.1   0.0         5   1.5e+04      12      24 ..    1522    1534 ..    1519    1534 .. 0.83
   5 ?   -1.5   0.0       1.5   4.5e+03       1      18 [.    1887    1905 ..    1887    1906 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.65
                 HHHHHHHHHT-SSHHH CS
        HEAT   1 llPlllkllsDpspeV 16 
                 ++ +l++l++Dp + V
  CDO71364.1 662 IVSMLQRLCQDPQALV 677
                 6789********8766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4
                  SSHHHHHHHHHHHHHHH CS
        HEAT   12 pspeVReaAakaLgala 28  
                  ++p+V   A+ aL +la
  CDO71364.1 1333 CNPHVSFFALDALRQLA 1349
                  58999999*****9997 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0004
                  HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    8 llsDpspeVReaAakaLgalae 29  
                  +++ ++p+VR++++++L ++++
  CDO71364.1 1375 MIHNSNPDVRDMVLQCLQQMIQ 1396
                  77889*************9986 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5
                  SSHHHHHHHHHHH CS
        HEAT   12 pspeVReaAakaL 24  
                  ++ eVR+ A+ +L
  CDO71364.1 1522 EDLEVRRLALDSL 1534
                  6789*****9876 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.5
                  HHHHHHHHH.T-SSHHHHH CS
        HEAT    1 llPlllkll.sDpspeVRe 18  
                  + Pl  +ll +D +peVRe
  CDO71364.1 1887 IYPLATNLLsRDLAPEVRE 1905
                  56888889889*******8 PP

>> DUF1539  Domain of Unknown Function (DUF1539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.027        81       6      51 ..    1168    1212 ..    1165    1221 .. 0.89
   2 ?   -4.3   0.1         6   1.8e+04      26      48 ..    1298    1323 ..    1284    1329 .. 0.68
   3 ?    7.0   0.0     0.002       5.8       7      63 ..    1367    1427 ..    1363    1435 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.027
     DUF1539    6 pFLesLlenspqswkelnrkLekeikklaqnlrdeWkkilkylskk 51  
                   FL++L e ++++++ ++  L   +++ +  l+  W+++l+++s+ 
  CDO71364.1 1168 TFLNNLGEMKTKNMEAIKTLLDIAVTEGNH-LKASWREVLTCVSQL 1212
                  59****************999999999888.***********9984 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 6
     DUF1539   26 Lekeikklaqn...lrdeWkkilkyl 48  
                  L+k ++ ++ n   +r eW+++ ++l
  CDO71364.1 1298 LQKLVEISYYNmnrIRLEWSNMWDIL 1323
                  55554444444448999999998876 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.002
     DUF1539    7 FLesLlenspqswkelnrk.....LekeikklaqnlrdeWkkilkylskkesseveseeaqa 63  
                  FL+ +  +  +++++  r      L++ i+    nlr++W+++  ++s+ +s+  +++ a++
  CDO71364.1 1367 FLRPFEYTMIHNSNPDVRDmvlqcLQQMIQARVHNLRSGWRTMFAVFSA-ASKAATERIANS 1427
                  566555555555555555566666************************9.555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.53
# Mc/sec: 10935.15
//
Query:       CDO71365.1  [L=340]
Description: hypothetical protein BN946_scf184908.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-138  460.9   0.0   1.7e-138  460.7   0.0    1.0  1  DS        Deoxyhypusine synthase


Domain annotation for each model (and alignments):
>> DS  Deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.7   0.0  9.5e-143  1.7e-138       1     288 []      21     332 ..      21     332 .. 0.99

  Alignments for each domain:
  == domain 1  score: 460.7 bits;  conditional E-value: 9.5e-143
          DS   1 ellesyekigfqatslgeaidilnkm.......................rkdekctiflgltsnlissGlreiiadlvkeklvdvivtTaggieeDlik 76 
                 +llesy++igfqa+slg+ai+i+nkm                       r+++kc iflg+tsnlissGlreii +lvk+k+v++ivtTaggieeD+ik
  CDO71365.1  21 KLLESYKRIGFQANSLGKAIEIVNKMrkwrlsdepvaadeseeylspevRANTKCNIFLGYTSNLISSGLREIILYLVKHKHVSAIVTTAGGIEEDFIK 119
                 599************************************************************************************************ PP

          DS  77 algkktylgdfelddeeLrekginRignllvpnenyckfedwvreildkleeeqk....vwspselikelGkeindeeSilywAykndipvfcpaltDg 171
                 +lgk tyl+df+ld+++Lr++g+nRignl+vpn+nyckfedw+++ild++++eqk    vw+ps++i++lGkei++eeS++ywAykndipvfcpaltDg
  CDO71365.1 120 CLGK-TYLADFNLDGADLRRRGMNRIGNLIVPNDNYCKFEDWLTPILDAMLAEQKetgqVWTPSSFIRRLGKEIDNEESVYYWAYKNDIPVFCPALTDG 217
                 ***9.************************************************98899999************************************** PP

          DS 172 slGdqlllfhsvkekkklkldivkDirelndialkakktgaiilGGGvpKhhilnanlmrngadyavyittaqefdGslsgatldEavSwgkikaeaks 270
                 slGd +++fhs+k+++ l++div+Dir+ln+++ k++k+g+iilGGGv+Kh+i+na+l+rngady vyi+t+qefdGs+sga++dEavSwgki+a+++s
  CDO71365.1 218 SLGD-MIYFHSFKNPG-LIVDIVQDIRNLNELSRKSRKAGMIILGGGVCKHQIANAMLIRNGADYSVYINTGQEFDGSDSGARPDEAVSWGKIRAGSES 314
                 ****.*******9999.********************************************************************************** PP

          DS 271 vkvyaDaTivlPLlvaat 288
                 vkv+aDaT+v+PLlvaat
  CDO71365.1 315 VKVFADATLVFPLLVAAT 332
                 ***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2313.48
//
Query:       CDO71366.1  [L=247]
Description: hypothetical protein BN946_scf184908.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-74  248.4   1.7    6.4e-74  248.2   1.7    1.0  1  14-3-3    14-3-3 protein


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.2   1.7   3.6e-78   6.4e-74       1     222 []      16     241 ..      16     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 248.2 bits;  conditional E-value: 3.6e-78
                 HHHHHHHCCHHHHHHHHHCHHHHC.SS---HCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCTCC.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      14-3-3   1 laklaeqaeryddmveymkkvvel.keeLskeernlLsvayKnvvgarRaswrvlssieqkeeske.ekkvelikeyrekiekeLkeiceevlelldkt 97 
                 lak+a+qaery d+++++k+++++ +++L+ +ernlLs+ayKn++ + R+swr+++++++ke  ++ +++v+l++  +e iek+++++c++v+ ll++t
  CDO71366.1  16 LAKVADQAERYRDVIAQLKDIIDTcGPQLTIDERNLLSIAYKNLTATLRSSWRTIDTLQKKEALSStRQQVKLMRVQKELIEKDIDALCKDVVGLLERT 114
                 69*********************99********************************9887777667999***************************** PP

                 CHCH.-SHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCC CS
      14-3-3  98 lipkatseeskvfylkmkgDyyRYlaEfaegeekkeaaekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiael 196
                 l+p+a++ e+kvfy+km+gDyyRYlaE+++ + k++ a+++ +aY+ A++ a ++l+ thp+rLglaLN++V++++i++spe+Ac+lak+afdea+a+ 
  CDO71366.1 115 LMPAANDGEEKVFYCKMRGDYYRYLAELTRLNSKEDLAKASLDAYQFAYKHALATLPATHPTRLGLALNFAVYFHDIMRSPERACHLAKHAFDEAVAAA 213
                 **999********************************************************************************************98 PP

                 CCS.TTT..HHHHHHHHHHHHHHHHHHC CS
      14-3-3 197 delsees..ykdstlilqlLrdnltlWt 222
                  e  ++    +ds +ilql+rd+l lW+
  CDO71366.1 214 SESPSKVanLEDSLMILQLMRDDLILWQ 241
                 7665433359*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1836.44
//
Query:       CDO71367.1  [L=230]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-53  180.3   0.2    5.2e-53  180.0   0.2    1.0  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.2   2.9e-57   5.2e-53       1     202 [.      19     219 ..      19     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 2.9e-57
                     XEEEEEEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCSTTB..--S.SBEEEETTSEEEEEEES.......SC-.TT--S-EEEEEEE- CS
  Glyco_hydro_61   1 HgvvksltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCnkag..paa.avaevkaGdtvtfewke.......kwi.ssHkGpvlvYlakc 84 
                     H +++ ++vng+++ g+++  r++    +n+pvtdvts+d++Cn +g   a  ++++++aG+++tfew++       ++i   HkGpv+vY+ak+
      CDO71367.1  19 HFTLQYIWVNGVDQ-GHNTDLRVP---PNNNPVTDVTSTDLTCNVNGlsGAGvSTVSIPAGSNITFEWHQhdqrtgeDAIsGGHKGPVQVYIAKA 109
                     999**********6.778888887...7899*************666644444558*************9877655425559************* PP

                     SSS-GTTT--GGGCEEEEEEEE-EETE-ST.EHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-S.B.- CS
  Glyco_hydro_61  85 asgddcktvdgsglkWfKideegldasakk.WatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgt.alp 177
                     +s  +++t+dg+g++W+Ki+ +gl + +++ Watd +++n+    v iP+sl++GeYllR+EiiALh a+s++gaQf      +++tg+g+ + p
      CDO71367.1 110 PS--TAATFDGQGTVWTKIYSSGLLNPQTQqWATDVVNANN--GIVVIPSSLPAGEYLLRAEIIALHVAQSYPGAQF------VKITGGGNaNPP 194
                     64..799****************98776667****995554..799**********************966555555......9*******5545 PP

                     -EEGCCSS-TTSTTTSS-TTTTST- CS
  Glyco_hydro_61 178 evsfpgaykasdpgilvniyeesks 202
                     ++++pgayk++dpgi++niy++ +s
      CDO71367.1 195 KIALPGAYKPTDPGITINIYNNLQS 219
                     7******************997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1608.22
//
Query:       CDO71368.1  [L=284]
Description: hypothetical protein BN946_scf184908.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-44  152.0   0.0    3.3e-42  144.7   0.0    2.1  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.17   11.8   0.0       0.34   10.9   0.0    1.5  1  Imm12         Immunity protein 12


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   3.7e-46   3.3e-42      29     292 ..       2     258 ..       1     260 [. 0.94

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 3.7e-46
                   HTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HH.HHHHHHHHHHHHHT-S-EEEEEE-S--TTS-......... CS
  Aldo_ket_red  29 eaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglske.niresleeslkrLgtdyvDllllHrpdpslp......... 115
                   +aG++++DtA++Y     e+  + a+kks+++reev i+tK+         ++++    ++ ++esl +L+t+yvDl+l+H+p+ s           
    CDO71368.1   2 QAGYRLIDTAWIY--AGTEKATALAIKKSGVPREEVWITTKL---------HHQHGpFTQKFFQESLDNLETNYVDLYLMHWPQTSKWvgessplve 87 
                   79***********..888888889******************.........33333367899*********************998888******** PP

                   ..............................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT CS
  Aldo_ket_red 116 .............................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkg 183
                                                  + +++ +e+l+++G ++aiGvSnfsv+ lek+ +++kv ++++qve++++  l ++ l ++c kkg
    CDO71368.1  88 dlrvgllctiegvpeptdehgdiittdewTFTQTWAEMEKLYESGRAKAIGVSNFSVKNLEKLFETAKVVPAVNQVEMHPY--LVQQDLKDYCDKKG 182
                   *********************************************************************************..************** PP

                   -EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-- CS
  Aldo_ket_red 184 vpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelk 280
                   + l ay+p g   +                          kn ++++++ ela++++ s+aq++l++ +   +++ v+p++sn ++ ++nl  l  +
    CDO71368.1 183 IVLTAYTPTG---Y--------------------------KNVLTDPTITELAEKYKASPAQIVLNWHV--ARGVAVVPKSSNEHRQKENLTLL--D 246
                   **********...2..........................2458999**********************..9**********************..* PP

                   --HHHHHHHHHH CS
  Aldo_ket_red 281 lseeevaeldel 292
                   l +e+v+++ +l
    CDO71368.1 247 LEPEDVKRITAL 258
                   *******99887 PP

>> Imm12  Immunity protein 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.8e-05      0.34      45      76 ..     159     191 ..     135     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.8e-05
       Imm12  45 gldrikinly.isgdvsaycdktgitvtrysra 76 
                  ++++ +  y +  d+  ycdk gi  t y+ +
  CDO71368.1 159 AVNQVEMHPYlVQQDLKDYCDKKGIVLTAYTPT 191
                 567777777735789**************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 1857.38
//
Query:       CDO71369.1  [L=232]
Description: hypothetical protein BN946_scf184908.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00014   22.1  22.0     0.0019   18.4  22.0    2.2  1  DUF2052     Coiled-coil domain containing protein (DUF2052)
  ------ inclusion threshold ------
      0.028   13.3   0.5      0.034   13.0   0.5    1.0  1  Nucleo_P87  Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  22.0   2.1e-07    0.0019     112     198 .]     112     229 ..      66     229 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.1e-07
     DUF2052 112 a......................deedeeeeeek...........eekeeeeekeeeaeaevlseee............reelreeFtsimrerFLsGe 165
                 +                      +    +e+e+            e          e+++e+ +e e              e  e F ++++erF+ G 
  CDO71369.1 112 KeflgdgkqqvgklgsllgdyeeE----RESERVrairrqraeyiE-------SLPEEDEESDDE-EekpdpvseisilPAETEEGFLRLVKERFIYGF 198
                 011222223344566777654221....222211233321122211.......111222222222.1356666678888899999************** PP

     DUF2052 166 DeefDYsavDeneelDdlkeaerDaedkYFdee 198
                  e +DY++vD +e +D     +r+ae+++Fd+e
  CDO71369.1 199 LESIDYDKVDWDERWDG--DLDREAEERWFDDE 229
                 *****************..99**********97 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   3.8e-06     0.034     310     446 ..      56     189 ..      33     197 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.8e-06
  Nucleo_P87 310 erslqsPeqtparrkstkmteeslqsPaqtpawqtpattptretssdteaiksepektleeklreklpsdlsaqssvpdkkseasavlptekrkRrrar 408
                 ++    P+  + r k t+ ++ ++   + + +w+t  +  +r  + + +  k+  ek++    ++++     +  s+    +e+ ++   +  +R+ra+
  CDO71369.1  56 KQRTAIPAIRNRRLKYTQSNPPEFSLANAKSTWATLWEGRERPGKVQAQEEKEWAEKEFLGDGKQQVG----KLGSLLGDYEEERESERVRAIRRQRAE 150
                 34444444444444444444444444444555777777777777766666666666665555555554....3344444444444445568999999** PP

  Nucleo_P87 409 klqelssdededssdekevDkeke.rkRRreeDkdfLrl 446
                   + l ++++e++++e+++D   e ++   e ++ fLrl
  CDO71369.1 151 YIESLPEEDEESDDEEEKPDPVSEiSILPAETEEGFLRL 189
                 999999999999999999997666244455556678887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1860.71
//
Query:       CDO71370.1  [L=443]
Description: hypothetical protein BN946_scf184908.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-06   28.1   1.6    3.7e-06   27.7   1.2    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0017   18.2   0.0     0.0034   17.3   0.0    1.6  1  Lipase_3       Lipase (class 3)
     0.0023   17.6   0.0     0.0087   15.7   0.0    1.9  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0024   17.2   0.0      0.005   16.1   0.0    1.5  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0068   15.9   0.0      0.093   12.2   0.0    2.6  1  DUF676         Putative serine esterase (DUF676)
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.033   13.9   0.0    1.9  2  PGAP1          PGAP1-like protein
      0.018   14.9   0.0      0.027   14.3   0.0    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.032   13.6   0.1       0.26   10.6   0.1    2.1  1  DUF915         Alpha/beta hydrolase of unknown function (DUF9
       0.15   11.6   0.1          1    8.8   0.1    2.2  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   1.2   1.9e-09   3.7e-06       1     170 [.      29     243 ..      29     305 .. 0.51

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.9e-09
                    EEEE--GC.....G....C.HHHHHHHHCCTCEEEEE--TTS...T.........S-GGCS...............--HHHCHHH...HHHHCCTT CS
  Abhydrolase_6   1 vlllHGagssassW....l.vapLaallaagvhvlapDlpGh...G.........rsdppp...............ldledladl...aalldela 61 
                    ++++HG+ ++ s +    +   +++  + + v+v ++ lp +   G                               d+  l dl   ++++++l+
     CDO71370.1  29 IVFIHGFKGTDSTFgefpQrLQHIVSESIGNVTVESIVLPAYetkGdlvsrmvslC----SirfnlafkkaavirfADW--LTDLtvrREVANGLG 118
                    79999944444445542323446688888888999999999966663333333331....0333333333223222444..444444555555555 PP

                    ....TTSEEEEEETCHHHHHHHHHHCC...................EEEEES-..----TTT....S----TTHHHHHHTT-C.CCCHCCH....S CS
  Abhydrolase_6  62 a..gggpvvlvGHSlGGalalaaapla.................lvvgvlldppptalpagl....laaalelllallallrl.lawlsre....p 129
                    +  g  ++vl GHS+GG+la+    ++                 +v++++ d+p  ++ +++    +  a+ ++++++ +l +  +w s+      
     CDO71370.1 119 GgaGKANIVLCGHSMGGLLAAD---ALiefvntrpdklaplwpnIVACIAFDTPA-SPLIAFvrnsATQAAGYVRTATNVLSSfKGWGSKStttaT 210
                    56666666**************...666668888999999999877889999943.2222221222222222222222222223455533221110 PP

                    -HSCCCCHHHCCCCHCHCCCGHHHHCCHHC....HTTCCHHTT-T CS
  Abhydrolase_6 130 lprlfladedadaawrarlarlaallaglg....llpaaawadlp 170
                                 + +a+ a++aa++a+      +  ++ wa++ 
     CDO71370.1 211 ------------FSTNAPIAPGAASAAQTTttstTSVWQKWAPAA 243
                    ............222222222222222222111111233333333 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0034      32     106 ..      59     170 ..      29     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
                 T-EEEHHHHHHHH...............................S-HHHHHHHHHHH.HHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS..... CS
    Lipase_3  32 ggkvhsgfleaye...............................eslreqvlkelkr.llekypeysivvtGHSLGgalAlLaaldlvengene..... 93 
                 +++v+s  l aye                                 +  +v++e+ + l     +++iv++GHS+Gg lA+ a +++v++++ +     
  CDO71370.1  59 NVTVESIVLPAYEtkgdlvsrmvslcsirfnlafkkaavirfadWLTDLTVRREVANgLGGGAGKANIVLCGHSMGGLLAADALIEFVNTRPDKlaplw 157
                 5566666666666666666666666666666666666666665444445677777773444445899**************999999999999899999 PP

                 ---EEEEEES--- CS
    Lipase_3  94 kkkvtvvtfGqPr 106
                  + v +++f +P 
  CDO71370.1 158 PNIVACIAFDTPA 170
                 9999999998886 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8   3.6e+03      91     108 ..      70      87 ..      65     106 .. 0.69
   2 !   15.7   0.0   4.4e-06    0.0087      71     135 ..     122     198 ..     120     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
                    HHHHGGGEEEEEEESECS CS
  Abhydrolase_1  91 aaeyperVkalvllgaid 108
                    ++   + V+++v+l++i 
     CDO71370.1  70 YETKGDLVSRMVSLCSIR 87 
                    566689999999999943 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.4e-06
                    TTSSEEEEEETHHHHHHHHHHHHH............GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHH CS
  Abhydrolase_1  71 gddkltlvGhSmGGmialayaaey............perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadc 135
                    g  +++l GhSmGG++a+ ++ e+            p+ V++++++ + +p +++ +   +qa+++ +++ ++   +
     CDO71370.1 122 GKANIVLCGHSMGGLLAADALIEFvntrpdklaplwPNIVACIAFDTPASPLIAFVRNSATQAAGYVRTATNVLSSF 198
                    5678999*****************************************99999999999999999999998887665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-06     0.005      52      95 ..      97     143 ..      92     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
  Hydrolase_4  52 vpsfddyvdDlaafvekvkeehpel...plfllGhSmGGliallyll 95 
                  v +f d+++Dl    e +    +++   +++l+GhSmGGl+a+ +l 
   CDO71370.1  97 VIRFADWLTDLTVRREVANGLGGGAgkaNIVLCGHSMGGLLAADALI 143
                  55677777777655444443333333449*************99883 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.7e-05     0.093       7     134 ..      28     181 ..      23     198 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
      DUF676   7 LvVlvHGlqgn.........saDl.............elikeqlekikeklpeekieflmsennesktfkgidvlgerlae.evlevvkkkkdk...nk 79 
                 L+V++HG++g             l             e+i    +++k +l  +++ +++ + n +++ + +   ++ l +  v+ +v +   +   ++
  CDO71370.1  28 LIVFIHGFKGTdstfgefpqR--LqhivsesignvtvESIVLPAYETKGDLVSRMVSLCSIRFNLAFKKAAVIRFADWLTDlTVRREVANGLGGgagKA 124
                 788888888885555555330..1434554444433333333333335566666666666666655555554433333332123333333333255558 PP

      DUF676  80 kiSfvghSlGgliaraaiaklkekem..tlkeaikglepvtfitlasPhLGvlyssk 134
                  i + ghS+Ggl a  a+    + +     +   + + ++ f t asP++  + +s+
  CDO71370.1 125 NIVLCGHSMGGLLAADALIEFVNTRPdkLAPLWPNIVACIAFDTPASPLIAFVRNSA 181
                 9***********999887766544433412323367899999999999987666655 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.8   3.6e+03       8      22 ..      30      44 ..      27      85 .. 0.54
   2 ?   13.9   0.0   1.7e-05     0.033      90     109 ..     123     142 ..      95     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
       PGAP1  8 lFvpGnagsykqvrs 22
                +F++G  g+      
  CDO71370.1 30 VFIHGFKGTDSTFGE 44
                566665554433333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.7e-05
       PGAP1  90 ptsviliGHSmGGivaraal 109
                 + +++l GHSmGG++a  al
  CDO71370.1 123 KANIVLCGHSMGGLLAADAL 142
                 678************97665 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.027      67     109 ..     120     161 ..      83     236 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                    TETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE..- CS
  Abhydrolase_3  67 gadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP..v 109
                    ga +++ivl+G S GG laa +++++ ++   ++  ++ ++P  v
     CDO71370.1 120 GAGKANIVLCGHSMGGLLAADALIEFVNT---RPDKLAPLWPniV 161
                    47789**********************98...6666666666441 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00013      0.26       9     117 ..      24     138 ..      16     152 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
      DUF915   9 kkeiPtifihGyggtaeslnemvkqlenkegkkkkvltvdvskdg..evsvkgkiskda.knPiikvgfednrdaslkkqakwlk......kvlseLkk 98 
                 ++ i ++fihG++gt+++++e  ++l+  + +++++  v+v++    +  +kg++  ++     i+++++ ++ a +  +a wl       +v + L  
  CDO71370.1  24 QDLILIVFIHGFKGTDSTFGEFPQRLQ--HIVSESIGNVTVESIVlpAYETKGDLVSRMvSLCSIRFNLAFKK-AAVIRFADWLTdltvrrEVANGLGG 119
                 566779***************999996..33333333344443221123345555444413456777777777.5666677776422111245555555 PP

      DUF915  99 kYnikkfnavGhSmGglal 117
                   +  ++ + GhSmGgl +
  CDO71370.1 120 GAGKANIVLCGHSMGGLLA 138
                 5555555566777777765 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00052         1      90     120 ..     110     150 ..      16     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00052
      DUF900  90 k..........ksakkihllaHSmGtwlvlealrqlaiead 120
                            +++ +i l  HSmG  l++ al + +++  
  CDO71370.1 110 RrevanglgggAGKANIVLCGHSMGGLLAADALIEFVNTRP 150
                 3445555666578899*****************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2991.17
//
Query:       CDO71371.1  [L=923]
Description: hypothetical protein BN946_scf184908.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-12   46.9   2.5    6.4e-12   45.2   2.5    2.0  1  F-box-like  F-box-like
    2.4e-10   40.5  13.5      0.087   13.3   0.0    7.5  8  LRR_4       Leucine Rich repeats (2 copies)
      6e-07   29.0  13.4        1.8    8.8   0.1    9.3 10  LRR_6       Leucine Rich repeat
    5.5e-05   22.9   0.3    0.00073   19.3   0.5    2.8  2  F-box       F-box domain
  ------ inclusion threshold ------
      0.038   14.1   0.2       0.06   13.5   0.2    1.2  1  YL1         YL1 nuclear protein


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   2.5   1.8e-15   6.4e-12       2      47 ..      61     105 ..      60     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.8e-15
  F-box-like   2 srLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 srLP+EiL++I+ ++ +++dL+r++lV+r W+++   + lLW+r+++
  CDO71371.1  61 SRLPPEILIHILKHVhSARDLYRAMLVSRAWCECS-VE-LLWYRPYF 105
                 79*************8899***************8.45.******98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.059   2.1e+02       3      34 ..     134     166 ..     132     175 .. 0.73
   2 ?    4.2   0.1     0.018        64       2      31 ..     156     189 ..     155     196 .. 0.82
   3 ?    3.6   0.1     0.027        98       1      37 [.     207     247 ..     207     251 .. 0.81
   4 !    6.4   0.6    0.0034        12       4      38 ..     236     274 ..     235     277 .. 0.73
   5 ?    4.3   0.0     0.016        57      12      38 ..     325     354 ..     319     358 .. 0.85
   6 ?    3.4   0.0     0.031   1.1e+02       1      32 [.     365     399 ..     365     412 .. 0.71
   7 !   13.3   0.0   2.4e-05     0.087       1      33 [.     417     452 ..     417     459 .. 0.80
   8 !    8.2   0.0   0.00099       3.5       3      32 ..     470     503 ..     469     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.059
                 --EEE--SS---.E-S-.HHH-TT--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqlt.dipl.leklpnLkeLdLsgNn 34 
                 L +L+ ++  lt ++ + l+++  L+ L+L +++
  CDO71371.1 134 LNFLNVAS-DLTdSLFSrLAQCVRLERLTLMNCT 166
                 77888886.699555557779********95554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
                 S--EEE--SS.---E-S-....HHH-TT--EEE-. CS
       LRR_4   2 nLevLdLsnN.qltdipl....leklpnLkeLdLs 31 
                 +Le L L n+  l+d +l    ++ +pnL  LdL+
  CDO71371.1 156 RLERLTLMNCtALSDEGLtrvlPR-CPNLVALDLT 189
                 79999***9867999888877666.********95 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.027
                 SS--EEE--SS.---E-S-..HHH.-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnN.qltdipl..lek.lpnLkeLdLsgNnlit 37 
                 ++L+ ++L ++ +ltd +   l++ +  L+ + Ls+  lit
  CDO71371.1 207 KRLQGINLTGCkKLTDASVmaLAQnCSLLRRVKLSNVELIT 247
                 5799999998868***999997754999******7765555 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0034
                 -EEE--SS.---E-S-..HH.H-TT--EEE-.-S----- CS
       LRR_4   4 evLdLsnN.qltdipl..le.klpnLkeLdLsgNnlitd 38 
                 + + Lsn   +td +   l+ ++p L e+dL+++ +itd
  CDO71371.1 236 RRVKLSNVeLITDQSIsvLArSCPLLLEIDLNNCKRITD 274
                 5666666545777777665557*********99888876 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.016
                 ---E-S-HH..H.-TT--EEE-.-S----- CS
       LRR_4  12 qltdiplle..k.lpnLkeLdLsgNnlitd 38 
                  ++d+p+l+  + + +L+ LdL+ + +itd
  CDO71371.1 325 GVQDLPPLRvsQpFEQLRMLDLTACAQITD 354
                 4899***888877*********99999986 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.031
                 SS--EEE--SS.---E-S-..HHH.-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnN.qltdipl..lek.lpnLkeLdLsg 32 
                 p+ ++L L+ + qltd     ++k  + L++L+L g
  CDO71371.1 365 PKIRNLVLAKCtQLTDNAVesISKlGKGLHYLHL-G 399
                 5778888886448887666544454577999999.3 PP

  == domain 7  score: 13.3 bits;  conditional E-value: 2.4e-05
                 SS--EEE--SS.---E-S-HH..H-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnN.qltdiplle..klpnLkeLdLsgN 33 
                 ++L+++dL+n+ qltd + +e   lp+L+ + L + 
  CDO71371.1 417 TRLRYIDLANCqQLTDMSVFElsTLPKLRRIGLVRV 452
                 68*********88******77736*****9988543 PP

  == domain 8  score: 8.2 bits;  conditional E-value: 0.00099
                 --EEE--SS.---E-S-...HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnN.qltdipl...leklpnLkeLdLsg 32 
                 Le ++Ls + q++       l+klp+L++L+L+g
  CDO71371.1 470 LERIHLSYCdQISVMAIhflLQKLPKLTHLSLTG 503
                 88899998777777666767779********965 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.014        51       2      21 ..     154     174 ..     153     176 .. 0.88
   2 ?   -0.4   0.0      0.44   1.6e+03       2      12 ..     180     190 ..     179     190 .. 0.88
   3 !    5.7   0.0    0.0051        18       8      24 .]     212     229 ..     207     229 .. 0.91
   4 !    8.8   0.1   0.00051       1.8       2      23 ..     258     280 ..     257     280 .. 0.89
   5 ?    0.1   0.0      0.31   1.1e+03       5      23 ..     341     360 ..     340     361 .. 0.80
   6 ?    0.2   0.0      0.29     1e+03       4      24 .]     366     387 ..     364     387 .. 0.85
   7 ?   -2.8   0.0       2.7   9.8e+03       5      17 ..     393     406 ..     393     410 .. 0.83
   8 !    5.3   0.0    0.0066        24       1      17 [.     415     432 ..     415     439 .. 0.87
   9 ?    1.3   0.0      0.13   4.8e+02       3      15 ..     468     481 ..     466     482 .. 0.86
  10 ?   -0.3   0.1      0.41   1.5e+03       3      12 ..     494     503 ..     492     503 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.014
       LRR_6   2 nthLteLdLsgNd.IgDeGae 21 
                 +  L+ L L+ +  ++DeG++
  CDO71371.1 154 CVRLERLTLMNCTaLSDEGLT 174
                 55799**************95 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.44
       LRR_6   2 nthLteLdLsg 12 
                 +++L +LdL++
  CDO71371.1 180 CPNLVALDLTS 190
                 89*******85 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0051
       LRR_6   8 LdLsgNd.IgDeGaeaLa 24 
                  +L+g++ ++D+ ++aLa
  CDO71371.1 212 INLTGCKkLTDASVMALA 229
                 69***************8 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00051
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaL 23 
                 ++ L e dL+ ++ I+D+G+  L
  CDO71371.1 258 CPLLLEIDLNNCKrITDSGVREL 280
                 78899**************9765 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.31
       LRR_6   5 LteLdLsgNd.IgDeGaeaL 23 
                 L+ LdL+ +  I+D+ +e +
  CDO71371.1 341 LRMLDLTACAqITDDAIEGI 360
                 56699999999***987765 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.29
       LRR_6   4 hLteLdLsgNd.IgDeGaeaLa 24 
                 +++ L L+ +  ++D  +e+++
  CDO71371.1 366 KIRNLVLAKCTqLTDNAVESIS 387
                 678899999999****999986 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 2.7
       LRR_6   5 LteLdLsgNd.IgD 17 
                 L +L+L +   I+D
  CDO71371.1 393 LHYLHLGHAVaITD 406
                 789***99888888 PP

  == domain 8  score: 5.3 bits;  conditional E-value: 0.0066
       LRR_6   1 snthLteLdLsgNd.IgD 17 
                 s+t L++ dL+ ++ ++D
  CDO71371.1 415 SCTRLRYIDLANCQqLTD 432
                 599***********9999 PP

  == domain 9  score: 1.3 bits;  conditional E-value: 0.13
       LRR_6   3 thLteLdLsgNd.I 15 
                  +L+  +Ls++d I
  CDO71371.1 468 ATLERIHLSYCDqI 481
                 59*********977 PP

  == domain 10  score: -0.3 bits;  conditional E-value: 0.41
       LRR_6   3 thLteLdLsg 12 
                 ++Lt+L+L+g
  CDO71371.1 494 PKLTHLSLTG 503
                 79******86 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5     2e-07   0.00073       4      36 ..      61      94 ..      59     101 .. 0.89
   2 ?   -1.2   0.0      0.56     2e+03      28      43 ..     599     614 ..     599     616 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2e-07
                HHS-HHHHHHHHHTS-HHH.HHHHCTT-HHHHHH CS
       F-box  4 srLPsevlrhILerLplsd.llalrrVSkgwril 36
                srLP+e+l hIL+++     l ++++VS+ w  +
  CDO71371.1 61 SRLPPEILIHILKHVHSARdLYRAMLVSRAWCEC 94
                8*************955545***********988 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.56
                 TT-HHHHHHHTTHHHH CS
       F-box  28 rVSkgwrilidsdrlw 43 
                 +VS++ r l+  +r +
  CDO71371.1 599 LVSRSTRELLATPRAH 614
                 6********9999877 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.7e-05      0.06      32     148 ..     564     699 ..     541     709 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  32 edDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkr................kkekkkrkaqkkkskkkkkkqkkkkkkkidp 114
                 +  ++fe+ e +++ ++ D+ +d+d+e++ s+++   +++ +el    r+ +                               ++   ++++++   +p
  CDO71371.1 564 DYEDGFEEPETQTDVHVADVVLDEDDEEDGSASDVLVSRSTRELLATPRAHErpvqedhghhrsyyvpS--------------REHMMSRDHRRH-PAP 647
                 3345677777777777999999****99999999999******99777777757654444444432221..............211111111111.111 PP

                 .................xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 115 .................qak.eprpkkkseraswlpaeslltpkrRkssRas 148
                                  +a  ++rp++   ++  ++++++ tp++ +s R++
  CDO71371.1 648 raqpraqaaaqpmwldtAAAgPSRPRRGFGQQPLIEQSTSPTPSEAASNRSA 699
                 2333444455557766422323355555577777777777677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 5692.47
//
Query:       CDO71372.1  [L=159]
Description: hypothetical protein BN946_scf184908.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00085   19.7   0.1     0.0071   16.7   0.0    2.0  2  DUF4050   Protein of unknown function (DUF4050)


Domain annotation for each model (and alignments):
>> DUF4050  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.033   5.9e+02      41      56 ..      17      32 ..       7      50 .. 0.77
   2 !   16.7   0.0   3.9e-07    0.0071     156     183 .]      78     105 ..      69     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.033
     DUF4050 41 GlalWearRdaWtgar 56
                G  ++ arR  W+   
  CDO71372.1 17 GPDHFLARRALWCTPV 32
                667899******9654 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3.9e-07
     DUF4050 156 sktpsvpInLsdmikalVqgWkadgeWp 183
                 +  ++ +++L+ +ik+l +gW+++g Wp
  CDO71372.1  78 GARLRHRLPLALVIKILQAGWIREGTWP 105
                 5678899********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1200.09
//
Query:       CDO71373.1  [L=97]
Description: hypothetical protein BN946_scf184908.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   69.3   0.4    1.9e-19   69.1   0.4    1.1  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.4   1.1e-23   1.9e-19       3      67 .]      15      93 ..      13      93 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.1e-23
                HHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET..............EEEEEEEEEEEGGGEEEEEE CS
         LSM  3 lkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk..............ekrklglvliRGnnivlisl 67
                ++ ++ ++v v+l+++rel G+L+++D +mNl+L+dveet+   +               krk++++++RG+ ++l+s+
  CDO71373.1 15 IRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDqvegvseghttvniAKRKMEMLFVRGDGVILVSP 93
                5678899*************************************9*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.49
# Mc/sec: 592.16
//
Query:       CDO71374.1  [L=226]
Description: hypothetical protein BN946_scf184908.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   72.4   4.1    2.5e-20   71.9   4.1    1.2  1  zf-U1      U1 zinc finger
  ------ inclusion threshold ------
       0.12   12.3   1.5       0.19   11.7   1.5    1.3  1  CLIP1_ZNF  CLIP1 zinc knuckle


Domain annotation for each model (and alignments):
>> zf-U1  U1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   4.1   2.8e-24   2.5e-20       1      38 []       1      38 [.       1      38 [. 0.99

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 2.8e-24
                XXSEEETTTTEEESS-SHHHHHHHHTSHHHHHHHHHHH CS
       zf-U1  1 mpkYyCdYCdiyLthDspsvRksHngGrkHkenvkdyy 38
                mpk yCdYCd++LthDs svRk+Hn+Gr+H  nv+dyy
  CDO71374.1  1 MPKHYCDYCDVFLTHDSASVRKAHNSGRNHLANVRDYY 38
                9************************************9 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   2.1e-05      0.19       3      10 ..       5      12 ..       4      19 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
   CLIP1_ZNF  3 YCdnCEvF 10
                YCd+C+vF
  CDO71374.1  5 YCDYCDVF 12
                ******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1672.81
//
Query:       CDO71375.1  [L=400]
Description: hypothetical protein BN946_scf184908.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-51  174.2   0.0    4.1e-51  173.0   0.0    1.6  2  Sua5_yciO_yrdC  Telomere recombination
    5.9e-29  101.3   0.0      9e-29  100.7   0.0    1.3  1  SUA5            Putative GTP-binding controlling metal-bindin


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0   0.0   4.6e-55   4.1e-51       7     179 .]      44     220 ..      38     220 .. 0.96
   2 ?   -3.2   0.0      0.58   5.2e+03      94     107 ..     307     320 ..     270     333 .. 0.58

  Alignments for each domain:
  == domain 1  score: 173.0 bits;  conditional E-value: 4.6e-55
                     SEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-..TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHHHTTTTE CS
  Sua5_yciO_yrdC   7 givaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae..seveeealkllerfwPGpitlllkrskeklpkevapglkt 99 
                     + va+ptetvYgL++ a +++a +r++  Kgrp d+pl+v+v+s ++l +++     +++   +l++rfwPGp+tll + + + +p+ +++++ t
      CDO71375.1  44 QTVAFPTETVYGLGALALEPDAAARIFSTKGRPPDNPLIVHVSSKDMLPRILPegYTISRTYEALIQRFWPGPLTLLFPTDPSIVPPIITANQPT 138
                     78*************************************************9877788999999***************87777*********** PP

                     EEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETT..SSTSSECEXX CS
  Sua5_yciO_yrdC 100 vGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdlt..egkpkilRrG 179
                     v+vr+P++p+ar+L+  +++p++a+San sg+ps+t+ae+v ++l++++++ildgg++ vg +stVvd +  +g++++lR+G
      CDO71375.1 139 VAVRMPSHPIARALIAIADAPVAAPSANSSGRPSPTRAEHVFNDLKGKLSIILDGGPCGVGLESTVVDGLheDGNLRVLRPG 220
                     ********************************************************************998999******98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.58
                     HTTTTEEEEEE-SS CS
  Sua5_yciO_yrdC  94 apglktvGvrlPdt 107
                     ++++ ++Gv +P+ 
      CDO71375.1 307 SSRSLRIGVLCPSD 320
                     44555778888754 PP

>> SUA5  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0     1e-32     9e-29       1     134 []     222     393 ..     222     393 .. 0.82

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 1e-32
                 .-HHHHHHHS...............---...........-------------S-SSEEEEE--GGGHHHH...............HHHHHTTS-EEEEE CS
        SUA5   1 itleeleevl...............davek.......keekpraPGmkyrHYaPkapvvlveaeeeeeaake..........ekleekkksgkkvgvla 67 
                 +t+e+le+++               +   +        e++p++PGmkyrHY+P++pv+l++++++  + ++           ++   +++  ++gvl+
  CDO71375.1 222 VTVEDLERAIredladehpvprvlvH---RrdyrdetIEQAPTTPGMKYRHYSPSVPVTLLHTQSAPPNGTSrtslsafvesLAACGDSSRSLRIGVLC 317
                 79999999997766654443333220...14555666899***********************99999888899******8877778889999****** PP

                 EGGGTGG........TSEEEEE.........E-TT-HHHHHHHHHHHHHHHHHS--SEEEEE----STTHHHHHHHHHHHTT CS
        SUA5  68 tseskea........assvlsls.......lgsrsdleeaarnLFaaLrelDeegvdlilvegvpeeglglAvmnRLrkAAg 134
                  s+s                  +       lg+ ++++  a++LF++L +lD ++vdli+ve++ ee +glAvmnR++kAAg
  CDO71375.1 318 PSDSPLLeqisslavP------NvtwvkhlLGPIAEPAISAQRLFDGLLALDAAKVDLIIVEEIREEREGLAVMNRVKKAAG 393
                 7777766665555441......14555666**********************99***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2978.75
//
Query:       CDO71376.1  [L=460]
Description: hypothetical protein BN946_scf184908.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-11   44.7   1.9    3.9e-11   43.2   1.9    1.8  1  HMG_box          HMG (high mobility group) box
      0.002   18.7   0.0     0.0042   17.7   0.0    1.5  1  HMG_box_2        HMG-box domain
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.024   13.9   0.0    1.2  1  MATalpha_HMGbox  Mating-type protein MAT alpha 1 HMG-box


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   1.9   6.5e-15   3.9e-11       2      69 .]     128     196 ..     127     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 6.5e-15
                 -SS--HHHHHHHHHHHHHHHHSTTS-..HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqraklkaenPelk..naeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 +Rp++af+l++++  ++  +  P  +   ++is+ +ge W++l+++eK k+++ka++  + +++++p+yk
  CDO71376.1 128 PRPPNAFMLYRSHLLKTG-QIPPVVEhrQQNISRVAGEAWNMLPDAEKNKWHAKAKEVLTAHMAKHPDYK 196
                 8***********998764.4445444459****************************************8 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     7e-07    0.0042       4      61 ..     127     184 ..     124     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7e-07
                 .-SS--HHHHHHHTTHHHHHHHT--..-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHH CS
   HMG_box_2   4 pkaarnAYalfvqemipelkrkGnp..viglaevsklcsekWkalseeeKekYeekAked 61 
                   +++nA++l+     ++ +    p    + +++s+ ++e W  l+++eK+k++ kAke 
  CDO71376.1 127 VPRPPNAFMLYRSHLLKTGQIP--PvvEHRQQNISRVAGEAWNMLPDAEKNKWHAKAKEV 184
                 5578999999988777766655..5224456789************************96 PP

>> MATalpha_HMGbox  Mating-type protein MAT alpha 1 HMG-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.1e-06     0.024      32      90 ..     115     181 ..      84     187 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.1e-06
  MATalpha_HMGbox  32 ake..sreakakkakkklNgFmgfRsYy.....lkLfsdlqqkeaSgfltqlWek..dpfrnkWdlia 90 
                      +    +++ak+++  ++ N+Fm +Rs++     ++   +  q+++S + +  W+   d ++nkW+  a
       CDO71376.1 115 R-PstPKNAKHNRVPRPPNAFMLYRSHLlktgqIPPVVEHRQQNISRVAGEAWNMlpDAEKNKWHAKA 181
                      2.13467778888899************6666666677899************97447899***8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3318.11
//
Query:       CDO71377.1  [L=592]
Description: hypothetical protein BN946_scf184908.g135 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-25   89.5   0.0    2.2e-14   53.6   0.0    2.4  2  DEAD         DEAD/DEAH box helicase
    3.9e-25   88.3   0.0    1.8e-23   83.0   0.0    2.4  2  Helicase_C   Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.012   13.9   6.5      0.021   13.1   6.5    1.4  1  Nop14        Nop14-like family
       0.75   10.1   7.9        2.4    8.5   3.1    2.9  3  Vfa1         AAA-ATPase Vps4-associated protein 1


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   8.2e-12   3.7e-08      15      58 ..     160     201 ..     148     209 .. 0.88
   2 !   53.6   0.0   4.8e-18   2.2e-14      93     175 ..     225     302 ..     212     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 8.2e-12
                 CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtre 58 
                 +d++++a+TGsGKT af++p+lq+++   +  g  al+++Ptr 
  CDO71377.1 160 RDCIGNAKTGSGKTIAFALPILQKLSL--DPYGIFALVLTPTRT 201
                 8************************75..99***********96 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 4.8e-18
                 HHHTTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +l n++++vv+tpgr++dll  + g+ +ls+++flVlDEadrll  +f ++++ ++  l       +++rq+ +++ATl++ v++
  CDO71377.1 225 ELGNRPHVVVATPGRIVDLLksTYGEWDLSRIKFLVLDEADRLLTPSFAPELSYLFGIL-------PKERQTALFTATLTDAVER 302
                 44588*************9976567799*******************************.......67899*********99987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0     4e-27   1.8e-23      17     111 .]     400     494 ..     392     494 .. 0.92
   2 ?    2.8   0.0     0.032   1.4e+02      85     110 ..     551     579 ..     547     580 .. 0.77

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 4e-27
                 SEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  17 gkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                   ++if+ + +++  ++ ll++ +i++++lh++l+q+er+ +l+ f++  + vL++tdv++rG+di++v  V+n d+p ++++y +r+GRt+Rag
  CDO71377.1 400 PPTIIFCSRPRTAAYLTHLLQNLHIRATALHSRLTQRERLSSLQLFRASVVPVLVSTDVGARGLDIEDVAIVVNWDIPVEPEEYTHRVGRTARAG 494
                 569********8866566667779*********************************************************************97 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.032
                 ESEEEESSSSSS...HHHHHHHHTTSSST CS
  Helicase_C  85 vnlVinfdlprn...vtsyiqriGRtgRa 110
                 ++ V n++l ++    ++ i+ri R+ Ra
  CDO71377.1 551 AKRVANMELHDSnfgKREEIHRIKRAKRA 579
                 67788888885533379*********998 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   6.5   4.6e-06     0.021     358     410 ..      24      80 ..       3     166 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-06
       Nop14 358 dddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdlese....eeeeedel 410
                  ++l  ++se+ee   e+d  e+e e+++e++e++edd++d  s+    e+ +e+e 
  CDO71377.1  24 RKRLRTEGSEDEEVATESDRTEAEREQDAEDSEHSEDDSEDHASHdsedEDGDESEG 80 
                 222333333333322222222222222222222222222222222110022222222 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.1   0.00053       2.4      78     157 ..      30     115 ..       4     130 .. 0.43
   2 ?    0.4   0.1      0.16     7e+02     102     123 ..     375     390 ..     354     421 .. 0.55
   3 ?    1.6   0.0     0.066     3e+02     131     165 ..     544     579 ..     516     592 .] 0.70

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00053
        Vfa1  78 eyeekqkkkkekekkk..kekdkkdkdkkkekekdkkkekekeeekkkelkkaeeelee.............keeprvkkykLhkefyqsRlerk 157
                 e  e ++  +e+++++  +e+d++d+++++++++d++++++ e+e  +e         e             +ee ++ ++  ++  ++ R  ++
  CDO71377.1  30 EGSEDEEVATESDRTEaeREQDAEDSEHSEDDSEDHASHDS-EDEDGDES--------EgphreimpvpllpDEEDSTSRFGASRITFKPRAANH 115
                 22222111111111111111111111111111111111111.11111111........0222334456777778888888999999999888876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
        Vfa1 102 dkkkekekdkkkekekeeekkk 123
                 +k+k k ++k+++k+      +
  CDO71377.1 375 AKSKPKPAKKSSKKS------S 390
                 111111111111111......1 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.066
        Vfa1 131 elee.keeprvkkykLhkefyqsRlerkrqaeaake 165
                 +l++ ++++rv++ +Lh++ + +R e +r ++a++ 
  CDO71377.1 544 KLNAvATAKRVANMELHDSNFGKREEIHRIKRAKRA 579
                 2222457899999***********998755544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 3856.84
//
Query:       CDO71378.1  [L=342]
Description: hypothetical protein BN946_scf184908.g136 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2554.71
//
Query:       CDO71379.1  [L=193]
Description: hypothetical protein BN946_scf184908.g137 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-57  194.4   0.0    1.1e-50  172.0   0.0    2.0  2  Mob1_phocein  Mob1/phocein family


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   6.9e-09   0.00012       1      26 [.      33      58 ..      33      59 .. 0.95
   2 !  172.0   0.0   6.1e-55   1.1e-50      52     169 .]      59     179 ..      58     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.9e-09
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  1 eatlgsgdlkeavklPkgedlneWla 26
                  eatlgsg+l+ av+lP+gedlneWla
    CDO71379.1 33 EATLGSGNLRLAVRLPDGEDLNEWLA 58
                  589**********************9 PP

  == domain 2  score: 172.0 bits;  conditional E-value: 6.1e-55
                   xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  52 cptmsagpkyeYlwade.evkkpvklsApeYidllmdwiesqlnd..lfpskagspfpknflkvvkkilkrlfrvyaHiYihHfeeiaeleleahln 145
                   cp+msagp+yeYlw d  ++kkp+kl+ApeY+d lm+w+++ l++  +fps++g+pfpknf++++ ++++rlfrvyaHiY +Hf++i +l+ eahln
    CDO71379.1  59 CPIMSAGPRYEYLWEDGvRYKKPTKLPAPEYVDALMNWVQTLLDNeeIFPSEMGKPFPKNFRDTIGRLFRRLFRVYAHIYSNHFDHICALGIEAHLN 155
                   ****************865****************************************************************************** PP

                   xxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein 146 tcfkhfvlfvkeFkLidkkelepl 169
                   t+++hf+lfv+eF+L+dk+el+pl
    CDO71379.1 156 TSYRHFFLFVNEFDLVDKRELAPL 179
                   *********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1439.73
//
Query:       CDO71380.1  [L=225]
Description: hypothetical protein BN946_scf184908.g138 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-14   52.2   0.0    1.2e-13   51.3   0.0    1.4  1  DJ-1_PfpI  DJ-1/PfpI family
    0.00042   20.1   0.0      0.017   14.8   0.0    2.1  1  ThiJ_like  ThiJ/PfpI family-like


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.3e-17   1.2e-13      19     155 ..      31     211 ..      24     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.3e-17
                 HHHHHHHTTEEEEEEESS.......TSEEEETTS.EEEE-SEEGG..........GCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEE CS
   DJ-1_PfpI  19 pvdvlkragikvdvvsvd.......keevkgsrG.lkvtvdasld..........dvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaa 99 
                 p+ vl+   +++d + ++        + v+  ++ +k+  d +++          dvka++yDa+  +GG+    +l+++++ ++l+  f+++gk+ aa
  CDO71380.1  31 PYYVLAP-KYEIDFAAPKgpnppvdPSSVENFKDdVKFLEDPTVKdklahakklsDVKASDYDAIFYVGGHGPVIDLATDPENIALATAFFRAGKITAA 128
                 5555554.45666666666655555333333222255555555555555555555*****************899************************ PP

                 ETTTHHHHH......HTTTTTTSEE--SGGGH.HHH..............HHTTSEE-SS......SEEEETTEEEESSGGGH CS
   DJ-1_PfpI 100 ICagpqlLa......aagvlkgrrvTsypavk.dkl..............ekagakyvdk......rvvvdgnlvTsrgpgaa 155
                 +C+gp  L+        +++k r++T++ +++  ++              ++ g +y+         vv+dgnl+T ++p +a
  CDO71380.1 129 VCHGPAALVgvtdanGDSIFKDRNATGFSNLEeAQVgkerdipflletriKELGGRYEKAkepwqaHVVKDGNLITGQNPASA 211
                 *****99983332212468999*********955558777777777777644455544448889889************9876 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.9e-06     0.017      81     140 ..      87     138 ..      19     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-06
   ThiJ_like  81 sleeydlvllpGGsdkavrelleserlhsllveylklvkrekepskvlgaicqgvlalaf 140
                 +  +yd+++  GG+++++ +l +++   +l + ++    r+    k+ +a+c+g +al  
  CDO71380.1  87 KASDYDAIFYVGGHGPVI-DLATDPENIALATAFF----RA---GKITAAVCHGPAALVG 138
                 5579**************.9999999999999999....55...59********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1578.99
//
Query:       CDO71381.1  [L=262]
Description: hypothetical protein BN946_scf184908.g139 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-19   67.8   0.0    5.1e-08   32.6   0.0    2.6  2  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    0.00024   20.7   0.0      0.025   14.1   0.0    2.2  2  RRM_5            RNA recognition motif. (a.k.a. RRM, RBD, or 
     0.0012   18.6   0.0      0.045   13.6   0.0    2.4  2  RRM_occluded     Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.029   15.4   1.6      0.043   14.9   1.6    1.3  1  Rib_recp_KP_reg  Ribosome receptor lysine/proline rich region
       0.12   10.8   0.6       0.15   10.5   0.6    1.1  1  MCM_bind         Mini-chromosome maintenance replisome factor
        0.5   11.1   2.9       0.89   10.3   2.9    1.5  1  DUF4666          Domain of unknown function (DUF4666)
       0.51    8.4   7.8       0.67    8.0   7.8    1.1  1  DNA_pol_phi      DNA polymerase phi
       0.52    9.5   2.9       0.72    9.0   2.9    1.2  1  TRAP_alpha       Translocon-associated protein (TRAP), alpha 


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.3e-11   5.1e-08       1      69 [.      10      80 ..      10      81 .. 0.84
   2 !   32.4   0.0   2.7e-11   6.1e-08       2      65 ..     185     252 ..     184     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.3e-11
                EEEESETTTSSHHH....HHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteee....LkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                l+V nL+  v+++e    L++lF  +G+i  i++v  +  k kg af+ F++   A++Al+ + g+ + ++++
  CDO71381.1 10 LYVHNLNDKVKKDElrhqLYALFTTYGRI--IDIVALKGPKMKGQAFIVFTDLAGATAALRGCEGMLFYDKPM 80
                799999999988862222579********..6666665799**************************999986 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2.7e-11
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd....etgkskgfafVeFeskedAekAlealngkklg 65 
                 ++ nLp++vt++ L  lF+++ ++ s+++ +     + g+  ++a+V ++s++ A  A+eal+g +l+
  CDO71381.1 185 MCLNLPQEVTDDVLAVLFQQYQGFHSVQVLPSptpnAAGQRVKMAYVMYDSPDLASVAKEALDGFTLK 252
                 566***************************999998999*************************9986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05     0.025      26     103 ..       7      89 ..       1      99 [. 0.81
   2 ?    4.5   0.0     0.011        25      15      63 ..     170     217 ..     158     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
       RRM_5  26 gsVllVyglepdkvn...ldklFnlfclYgnvervkflk..tkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 +  l V +l+ +       ++l+ lf+ Yg +  +  lk    k++a++   d   +  a+   ++   ++k++++   K ++
  CDO71381.1   7 NNTLYVHNLNDKVKKdelRHQLYALFTTYGRIIDIVALKgpKMKGQAFIVFTDLAGATAALRGCEGMLFYDKPMHIEYAKSKS 89 
                 5667888888654331225799****************944478****************************99999998876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
       RRM_5  15 tgspgaagvaegsVllVyglepdkvnldklFnlfclYgnvervkflktk 63 
                 +g+  aa ++ ++ l+  +l p++v+ d l  lf +Y   + v++l + 
  CDO71381.1 170 NGQVPAAVQQPSARLMCLNL-PQEVTDDVLAVLFQQYQGFHSVQVLPSP 217
                 44544555667888999999.567999***************9999765 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     2e-05     0.045       2      69 ..       8      81 ..       7      86 .. 0.78
   2 ?    2.5   0.0     0.057   1.3e+02       7      36 ..     187     215 ..     182     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
  RRM_occluded  2 rtisllplsDtvnkarir....alveekegeikkivLv..pdheG.AivefkdekiagkasLaLdgsefegkklr 69
                  +t+ +++l+D+v k+++r    al++++ g+i +iv    p+ +G A+++f+d + a  a+   +g+ f +k ++
    CDO71381.1  8 NTLYVHNLNDKVKKDELRhqlyALFTTY-GRIIDIVALkgPKMKGqAFIVFTDLAGATAALRGCEGMLFYDKPMH 81
                  899***********98873333567777.999999875346766669******9999988888888888777666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.057
  RRM_occluded   7 lplsDtvnkariralveekegeikkivLvp 36 
                   l+l+  v+++ +  l++++ + ++ +++ p
    CDO71381.1 187 LNLPQEVTDDVLAVLFQQY-QGFHSVQVLP 215
                   799*********9999999.8888887766 PP

>> Rib_recp_KP_reg  Ribosome receptor lysine/proline rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.6   1.9e-05     0.043      38      93 ..     123     204 ..     108     245 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
  Rib_recp_KP_reg  38 kkakkKedkpngkipEsestqepae....ekseseaevvveaepaPvvaaapaavaePv......................k 93 
                      +++++++dk +  ++E   ++   +    e+ e e + + ++++aP+  ++paav++P                       +
       CDO71381.1 123 GEKRQRDDKMDEDVREVKREKTDNSdddgEEMEIEDDDEGQKQAAPTNGQVPAAVQQPSarlmclnlpqevtddvlavlfqQ 204
                      4677888888888887544432222346678888889999999***999*******99855444444433333333333322 PP

>> MCM_bind  Mini-chromosome maintenance replisome factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   6.7e-05      0.15     114     209 ..     108     207 ..      95     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.7e-05
    MCM_bind 114 ksqekvesststlssrkKRsleeeeedeemdvsksekkeeissestkekeeeskssetekkskksasesklsaeklln.fplp...dekskaclVkvYd 208
                  +++++++  ++ +s +KR+++++ +++  +v++++++++ +  ++ e e + + ++++++++ ++  ++ + ++ l+ + lp    ++  a+l + Y+
  CDO71381.1 108 VQNAPNRQALQNGQSGEKRQRDDKMDEDVREVKREKTDNSDDDGEEMEIEDDDEGQKQAAPTNGQVPAAVQQPSARLMcLNLPqevTDDVLAVLFQQYQ 206
                 567778888899999******666555555555555554444444467777777777777777777777777776666677773333444555555555 PP

    MCM_bind 209 e 209
                 +
  CDO71381.1 207 G 207
                 5 PP

>> DUF4666  Domain of unknown function (DUF4666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.9    0.0004      0.89      28      94 ..     119     185 ..      68     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
     DUF4666  28 eeeeaeaeakaeeaaaeeeeakelrhsrsvgsig...slersrsnggsaqrvfrtkrvsPavdPpsPrvs 94 
                 + ++ e++++    ++ +e+++e++++++ +s     ++e +++++g++q +   ++v+ av+ ps r+ 
  CDO71381.1 119 NGQSGEKRQR---DDKMDEDVREVKREKTDNSDDdgeEMEIEDDDEGQKQAAPTNGQVPAAVQQPSARLM 185
                 3333333333...4455666667777666655432236777777888777777789**********9985 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.8    0.0003      0.67     634     695 ..     114     179 ..     107     198 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0003
  DNA_pol_phi 634 qaelfedededeeddeeeeeeddeededseedddeeesdedeededdedvdeid....elreklae 695
                   ++l +++  ++ + +++++ed  e + +++d+++++++e e ++dde  +++     + ++++++
   CDO71381.1 114 RQALQNGQSGEKRQRDDKMDEDVREVKREKTDNSDDDGEEMEIEDDDEGQKQAAptngQVPAAVQQ 179
                  444443333344444444444444433333333333333333333333333333344766655554 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.9   0.00032      0.72      24      73 ..     122     168 ..     101     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00032
  TRAP_alpha  24 vaaaaaeedevddelvdveaedeeveeeeeeeeeeeeeeeedeeelkasp 73 
                 + ++++ +d++d+++ +v+ e++++++++ ee    e e++de + +a p
  CDO71381.1 122 SGEKRQRDDKMDEDVREVKREKTDNSDDDGEEM---EIEDDDEGQKQAAP 168
                 345567788899999999988888777776533...33444444334433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1758.97
//
Query:       CDO71382.1  [L=378]
Description: hypothetical protein BN946_scf184908.g140 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-49  166.0  26.0    1.1e-48  165.6  26.0    1.2  1  TRAM_LAG1_CLN8  TLC domain
    5.4e-09   35.6   0.0    5.4e-09   35.6   0.0    3.3  4  TRAM1           TRAM1-like protein


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6  26.0   1.3e-52   1.1e-48       1     198 []     143     346 ..     143     346 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 1.3e-52
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlsssp.......elwegyperilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllv 88 
                     +f e+++s+++y+  ++fgl+v  + p       ++w++yp+ +l +    +k+yyll+++++++++l+++  e++rkd+++m++Hhiit++l+v
      CDO71382.1 143 RFAEQGWSVIYYTAQWCFGLYVHLHLPtsvldpiNVWTNYPHIPLAG---PIKFYYLLQTAFYMHQVLIINA-EARRKDHWQMMTHHIITIILMV 233
                     699******************************************99...9*********************.88999***************** PP

  TRAM_LAG1_CLN8  89 lsyvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap.........lwl 174
                      sy++n++rvg ++++l++l+d+fl l+k+++yl ++  + ++  f  +lfl s+fv+R+vl+ + +++++++ +   ++ ++           +
      CDO71382.1 234 GSYFYNYTRVGCLIMVLMDLCDIFLPLAKMFRYL-GM-STVCDATF--VLFLSSWFVTRHVLFLL-VIKATWTAWF-TVPRVWdpergqfmtKKT 322
                     **********************************.99.667*****..***************55.7888888884.4444447899****9*** PP

  TRAM_LAG1_CLN8 175 pliflilllvLqllnlyWfylivk 198
                     +++f+++l++Lq+++l+Wf++i++
      CDO71382.1 323 YFGFFTMLVALQIIQLIWFWMICR 346
                     **********************97 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     6e-13   5.4e-09       2      57 ..      15      74 ..      14      77 .. 0.94
   2 ?   -3.0   0.0      0.68   6.1e+03      50      58 ..     172     180 ..     164     181 .. 0.84
   3 ?   -1.0   0.8      0.16   1.5e+03      30      50 ..     284     304 ..     273     308 .. 0.73
   4 ?   -4.1   2.6       1.4   1.3e+04      31      54 ..     324     347 ..     322     353 .. 0.50

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 6e-13
       TRAM1  2 skFifLsynvpl....sansetglYgkGlkDlafvffyvivftflRaflmeyvlrPlarr 57
                 +F++Lsy+ ++    ++ +++++Y+ G+ D ++++  + v  +lR ++  y+ +P+ar+
  CDO71382.1 15 IPFFTLSYPTARpahpDSFPDSNYYANGPLDGCLIITAIAVMAILRDVTRIYIMEPFARW 74
                69******9987888888899**************************************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.68
       TRAM1  50 vlrPlarrl 58 
                 vl+P++ + 
  CDO71382.1 172 VLDPINVWT 180
                 89***9986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.16
       TRAM1  30 afvffyvivftflRaflmeyv 50 
                  fv  +v+++ ++ a+ + ++
  CDO71382.1 284 WFVTRHVLFLLVIKATWTAWF 304
                 477778888888887776665 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 1.4
       TRAM1  31 fvffyvivftflRaflmeyvlrPl 54 
                 f ff ++v+  + + +  +++ ++
  CDO71382.1 324 FGFFTMLVALQIIQLIWFWMICRV 347
                 556666665544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2661.62
//
Query:       CDO71383.1  [L=254]
Description: hypothetical protein BN946_scf184908.g141 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-26   92.3  29.8    2.4e-14   53.3  13.6    2.4  3  Snf7      Snf7
  ------ inclusion threshold ------
      0.092   11.3   0.5       0.15   10.6   0.5    1.3  1  DUF3138   Protein of unknown function (DUF3138)
        6.2    8.0  14.6        1.1   10.5   0.1    3.1  3  SOGA      Protein SOGA


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  13.6   4.1e-18   2.4e-14       1     101 [.      21     120 ..      21     122 .. 0.94
   2 !   50.0   2.5   4.1e-17   2.4e-13     101     169 ..     134     203 ..     129     206 .. 0.88
   3 ?   -2.6   0.3       0.6   3.6e+03     139     150 ..     238     249 ..     228     253 .. 0.50

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.1e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   1 eairsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnk 99 
                 eai +Lr++ ++++kk+e l+kki++ e + ++ ++  nk++a ++L++kk +e++l++l ++++ le +  ++e+++ n e + amk++++a+k ++k
  CDO71383.1  21 EAIINLRQQLQMIEKKEEYLQKKIEE-ETKKARANAVSNKAAATNALRRKKVTEQELERLHKTRFGLEIQINTLESASFNVENMVAMKKANEALKVIHK 118
                 67889*********************.666677778899***********************************************************9 PP

                 CT CS
        Snf7 100 kv 101
                  +
  CDO71383.1 119 DL 120
                 76 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 4.1e-17
                 TCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHHHHCSH...HHHHHHHTXX CS
        Snf7 101 vdidkidklmdeiedqmekaeeisEalsrslddadeedEeeleaeLdaLeqelgdeell..desvklpevP 169
                 +++dk+d++m ei++q + a+e+s+a+s+++ d  ++dE+el++eL +Leq+++++ l      v+ p+ P
  CDO71383.1 134 LNPDKVDQTMAEIQEQTQLANEVSNAISSNIVD-VDIDEDELKQELAELEQDELNDRLMadRVPVHHPAGP 203
                 89*****************************88.9******************999866665556666555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHH CS
        Snf7 139 EeeleaeLdaLe 150
                 E++ ea L +L+
  CDO71383.1 238 EDDEEAQLKELQ 249
                 333344444443 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   2.6e-05      0.15      24     104 ..      20      97 ..       4     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.6e-05
     DUF3138  24 adrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaaaeaaaalteddvaqlkeqianaelkvdalqeaa 104
                  + i +l+ ql+ ++++ + l++ ++ ++  a +++ s kaaa+ a        +te+++++l++     e+++++l+ a+
  CDO71383.1  20 REAIINLRQQLQMIEKKEEYLQKKIEEETKKARANAVSNKAAATNAL---RRKKVTEQELERLHKTRFGLEIQINTLESAS 97 
                 466889*************************9998888888777666...5567899999999999999999999999887 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   6.7     0.089   5.3e+02       4      28 ..      25      49 ..      21     119 .. 0.64
   2 ?   10.5   0.1   0.00018       1.1       2      43 ..     143     184 ..     142     209 .. 0.90
   3 ?   -3.5   0.1         3   1.8e+04      30      31 ..     241     242 ..     226     251 .. 0.48

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.089
        SOGA  4 eLrrhLqfveeEaeLlrrslselee 28
                +Lr++Lq++e   e l +++ e  +
  CDO71383.1 25 NLRQQLQMIEKKEEYLQKKIEEETK 49
                5666666666666666666654332 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
        SOGA   2 aaeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksk 43 
                  ae++++ q+++e ++ +  ++++++ ++++l++eL+ +  +
  CDO71383.1 143 MAEIQEQTQLANEVSNAISSNIVDVDIDEDELKQELAELEQD 184
                 589*********************************987665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
        SOGA  30 nk 31 
                 ++
  CDO71383.1 241 EE 242
                 11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2750  (0.153383); expected 358.6 (0.02)
Passed bias filter:                      802  (0.044732); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 1900.19
//
Query:       CDO71384.1  [L=1025]
Description: hypothetical protein BN946_scf184908.g142 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-52  177.8   0.0    1.8e-52  177.2   0.0    1.3  1  NIF       NLI interacting factor-like phosphatase
    7.4e-38  130.4  33.1    7.5e-33  113.9  26.2    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.0     2e-56   1.8e-52       1     156 []     839    1016 ..     839    1016 .. 0.93

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 2e-56
         NIF    1 ktLVLDLDetLvhskleksk...................klkve..gekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidildpekkl 76  
                  ktLVLDLDetL+hs++++                     +++v   g+++ ++v+kRp++d+fL+++s++y +vifTas++eya++vid+ld  + +
  CDO71384.1  839 KTLVLDLDETLIHSTSRPLPyaggsglfgfgsrnkgaahTVEVVlgGRSTLYHVYKRPFVDYFLRKVSQWYTLVIFTASMQEYADPVIDWLDAGRGI 935 
                  79*************6444458899999999998888764444477999************************************************ PP

         NIF   77 lshrlyrescvkk.kgeyvKdLsllgrdlsrvvivDdspdsfelqpengipiksffsdkkDneLlkllpllkelakvddvr 156 
                  l++rl+resc++  +g+y+KdLs++++dlsrv ++D+sp +++ +++ngipi+ +++d++D++Ll+llp+l++l+  +dvr
  CDO71384.1  936 LGRRLFRESCTQLpNGSYTKDLSIVEQDLSRVCLIDNSPVCYSINEANGIPIEGWTHDPHDEALLDLLPVLDSLRFTRDVR 1016
                  **********9888***************************************************************9997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9  26.2   8.4e-37   7.5e-33       2     310 ..      59     387 ..      58     393 .. 0.80
   2 !   23.0   4.8   3.7e-09   3.4e-05      65     206 ..     361     497 ..     356     508 .. 0.72

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 8.4e-37
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +++++l++ +r+++g+a       dl+++++e+ +ll++ ++g++++++p   + + +G  + +l +++ +++  ++l  + ++ +   l+ r++ G+ 
  CDO71384.1  59 IVIYILNYVDRNNAGAARLRGFEADLHLQGQEFATLLSILYVGYIIMQIPSNMFLNHIGKPSlYLPACMMIWGTLSILTGI-TNNFvGALLTRFFLGFV 156
                 67889999999998888866999************************************9999************444446.666669*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllll..peepperkrkspkeee 188
                 ++a+fp+++ li++w++++e g  ++ll+ g+ ++ ++g+l+++ +++  g       Wr++fyi ++++++++++++++l  +   ++r++ s++e++
  CDO71384.1 157 EAAFFPGALFLISKWYKRSELGTRTALLYCGNIISNAFGALIASGILDGMGgklgraaWRWLFYIEGALTVFVALCAIFVLpdFPATTRRWWLSEEERR 255
                 ***************************************9999999966666***********************999999777777888899888888 PP

       MFS_1 189 ...............kgtgpaplvp.......awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallag 265
                                + t      +       +w a++  + +w +++ + +  ++  ++ +++p+ l  ++g++    ++ll a +++++ai+a+ ++
  CDO71384.1 256 lamrrmeedagvgdeAET------EvggmasgLWMAVRDWR-VW-WMALAMTSQVVALSFNAYFPT-LSATMGFD-PTVTLLLCAPPFVFTAIMAFAIS 344
                 999999988664444333......24455556666666655.54.44444444446666*******.5*******.6888888**************** PP

       MFS_1 266 rlsdrlgrrrrlllallllllaalglallavtssavllllvlvli 310
                 r sdr+g   r + + + +l + +g++++  t ++++ +++l+l+
  CDO71384.1 345 RHSDRTGE--RFWHITGPFLGGIVGFVIAICTMNTAARYVSLFLM 387
                 *****998..33333333333333333333333455555555554 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 3.7e-09
       MFS_1  65 lllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk..eergraigllsagfslGailgpllggllasslg..Wravfyilai 159
                 +l g+++f+++  ++++  +  + +v+ +l++ ++ a+f +++++++  fp+  ++r+ a++l++a+++lG + g  + +   s++g  +r ++ i+ +
  CDO71384.1 361 FLGGIVGFVIA--ICTM--NTAARYVSLFLMAQCY-AGFVVMYTWVSNSFPRppSKRAVAVALVNAFSQLGNVAGSYVWP---SAWGptYRNSYAICIA 451
                 78999999999..4443..2235688888888886.88889*********99656********************66655...5556679999999988 PP

       MFS_1 160 vsllafvlfllllpeepperkrkspkeee..kgtgpaplvpawkallkd 206
                  +  a+ +  +++++ + +r + + ++ee  kg++++++++  ++  ++
  CDO71384.1 452 TAGWAIAM--CWVFRAHLARLNARLEREEheKGVKEKGFRQ-TESYYHS 497
                 88888665..6666666666555555555556666666666.5554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1025 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.54
# Mc/sec: 5691.86
//
Query:       CDO71385.1  [L=256]
Description: hypothetical protein BN946_scf184908.g143 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-05   25.0   2.7    3.1e-05   23.9   0.0    2.5  2  zf-RING_UBOX  RING-type zinc-finger
    0.00079   19.3   0.3      0.029   14.2   0.3    2.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0058   16.9  10.9        3.4    8.1   0.1    3.3  3  zf-RING_2     Ring finger domain
     0.0067   16.3   5.3       0.37   10.7   0.1    3.3  3  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.018   15.0   5.8       0.59   10.1   6.1    2.9  1  zf-RING_5     zinc-RING finger domain
      0.032   13.6   3.6      0.044   13.1   3.6    1.2  1  NOA36         NOA36 protein
       0.39   11.0   4.6         49    4.3   4.6    2.7  1  zf-rbx1       RING-H2 zinc finger domain
       0.67    9.9  11.1        0.4   10.6   1.0    3.4  3  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
       0.93    9.7   5.0        6.1    7.1   0.1    3.2  3  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        1.5    8.6   4.6         16    5.3   0.2    3.1  3  zf-RING_11    RING-like zinc finger
        1.5    8.7   7.5         19    5.2   0.0    3.3  3  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.9e-08   3.1e-05       1      22 [.      37      81 ..      37      82 .. 0.74
   2 ?    0.5   0.1       0.4   6.5e+02       1      10 [.     115     126 ..     115     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.9e-08
  zf-RING_UBOX  1 CpIClelft..............dP........lvl.pCGHtFCr 22
                  CpICl++f+               P        ++l  CGH+FCr
    CDO71385.1 37 CPICLNPFDailepkaadgavesPPeadelagvTKLvACGHIFCR 81
                  ************98888888887334444555423336******9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.4
  zf-RING_UBOX   1 CpIClelft..d 10 
                   Cp C+++f+  +
    CDO71385.1 115 CPSCRNVFSsiR 126
                   *******98554 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.8e-05     0.029       1      24 [.      37      82 ..      37     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
                -TTT-S--SS-E.......................E-TTS--B-CH CS
    zf-C3HC4  1 CpiCleeakepn......................elleCkHsfCsk 24
                CpiCl+ +  +                       +l  C+H fC++
  CDO71385.1 37 CPICLNPFDAILepkaadgavesppeadelagvtKLVACGHIFCRA 82
                *********999999*****************************86 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0021       3.4       1      11 [.      35      45 ..      35      52 .. 0.86
   2 !    6.8   1.1    0.0053       8.7      18      31 ..      71      82 ..      59      91 .. 0.69
   3 !    6.7   1.7    0.0055         9      20      44 .]      90     119 ..      84     119 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
   zf-RING_2  1 deCpICleels 11
                d+CpICl++++
  CDO71385.1 35 DSCPICLNPFD 45
                58******996 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0053
   zf-RING_2 18 ll.pCgHvfhreCle 31
                +l  CgH+f+r   +
  CDO71385.1 71 KLvACGHIFCR---A 82
                3337*****65...3 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0055
   zf-RING_2  20 pCgHvfh....reClerwlr.ssstCPlCr 44 
                  C+H+f+       l +w++ ++ +CP Cr
  CDO71385.1  90 ACRHFFDtilnTRSLVEWIQgRHGSCPSCR 119
                 5888774222134557885415555****9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.033        53      32      38 ..      36      42 ..      28      47 .. 0.79
   2 !   10.7   0.1   0.00023      0.37      11      25 ..      70      84 ..      64      97 .. 0.82
   3 ?    2.7   0.1     0.073   1.2e+02      30      40 ..     112     122 ..     104     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.033
  Prok-RING_4 32 sCPlCqr 38
                 sCP+C +
   CDO71385.1 36 SCPICLN 42
                 8****76 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00023
  Prok-RING_4 11 ailepCgHlvCkeCf 25
                   l+ CgH++C++ +
   CDO71385.1 70 TKLVACGHIFCRAWW 84
                 57899******9876 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.073
  Prok-RING_4  30 lssCPlCqrri 40 
                  + sCP C++ +
   CDO71385.1 112 HGSCPSCRNVF 122
                  569****9765 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.1   0.00036      0.59       2      43 ..      37     119 ..      36     120 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
   zf-RING_5   2 CnkCfekl.................skeek......fyltsCgHifCekClkkll.....................ekeavCpiCr 43 
                 C++C +++                 +   +        l++CgHifC +   ++l                     ++   Cp Cr
  CDO71385.1  37 CPICLNPFdailepkaadgavesppE---AdelagvTKLVACGHIFCRAWWLQSLfacrhffdtilntrslvewiqGRHGSCPSCR 119
                 99999999999988888877765430...245667799*********987777776777777777777777777777777777776 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.6   2.7e-05     0.044     202     296 ..     104     198 ..      72     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
       NOA36 202 gfkyeknkaipcpkcgyetqetkdlslstrslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedee 296
                      +++   cp c    +  +  s s  + + g    +d++d+dd+d++  d d+++++ +  dd d e+d d + d+d + +  e+d ed  
  CDO71385.1 104 LVEWIQGRHGSCPSCRNVFSSIRPASDSDNESSDGDYVPGDDEDEDDEDDAFFDSDGFMDTESVFDDMDIEEDADVNIDEDVDVETWEDDAEDAS 198
                 45566788889************************999999999999899999999999999988888888887777776666666666655544 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   4.6      0.03        49       1      47 [.      35      87 ..      35     119 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.03
     zf-rbx1  1 dtCaiCrneleeacieckapgdee.........cpvvlGeCgHaFHlhCiskWlkt 47
                d+C iC n++++      a+g  e          + +l +CgH F   C   Wl++
  CDO71385.1 35 DSCPICLNPFDAILEPKAADGAVEsppeadelaGVTKLVACGHIF---CRAWWLQS 87
                578888888886655555555544566666788444555788887...55566655 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.069   1.1e+02       2       6 ..      37      41 ..      33      48 .. 0.70
   2 ?   10.6   1.0   0.00025       0.4      12      31 ..      69      88 ..      63      93 .. 0.79
   3 ?    0.8   2.2      0.28   4.6e+02      32      40 .]     110     118 ..      86     118 .. 0.55

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.069
  zf-C3HC4_2  2 CpiCl 6 
                CpiCl
  CDO71385.1 37 CPICL 41
                66666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00025
  zf-C3HC4_2 12 psvvtpCgHvfCqkCilrsL 31
                 + + +CgH fC+  +l+sL
  CDO71385.1 69 VTKLVACGHIFCRAWWLQSL 88
                456779*******9999987 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.28
  zf-C3HC4_2  32 eekneCPlC 40 
                  ++ +CP C
  CDO71385.1 110 GRHGSCPSC 118
                 346699999 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.6      0.13   2.2e+02       1       6 [.      37      42 ..      37      46 .. 0.84
   2 ?    7.1   0.1    0.0037       6.1      14      22 ..      73      81 ..      71      87 .. 0.89
   3 ?    0.1   0.0      0.55     9e+02       1       6 [.     115     120 ..     106     126 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.13
  zf-C3HC4_4  1 CPiCld 6 
                CPiCl+
  CDO71385.1 37 CPICLN 42
                ****98 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0037
  zf-C3HC4_4 14 leCGhsfCl 22
                ++CGh+fC 
  CDO71385.1 73 VACGHIFCR 81
                79******6 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.55
  zf-C3HC4_4   1 CPiCld 6  
                 CP C++
  CDO71385.1 115 CPSCRN 120
                 666655 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2    0.0098        16       2      10 ..      37      45 ..      36      48 .. 0.90
   2 ?    2.6   0.0     0.071   1.2e+02      17      24 ..      72      79 ..      67      79 .. 0.80
   3 ?    0.4   0.2      0.35   5.7e+02      19      24 ..      90      95 ..      86      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0098
  zf-RING_11  2 CsICLeefk 10
                C ICL++f 
  CDO71385.1 37 CPICLNPFD 45
                ******995 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.071
  zf-RING_11 17 ilpCsHtF 24
                +  C+H+F
  CDO71385.1 72 LVACGHIF 79
                457****9 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.35
  zf-RING_11 19 pCsHtF 24
                 C H F
  CDO71385.1 90 ACRHFF 95
                6****9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.038        62      38      48 ..      35      45 ..      29      47 .. 0.75
   2 ?    2.0   1.2      0.12   1.9e+02      17      27 ..      72      81 ..      67      92 .. 0.87
   3 ?    5.2   0.0     0.012        19      33      48 ..     108     123 ..     102     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.038
                -B-TTT--B-- CS
  zf-C3HC4_3 38 kkCpiCrrpie 48
                ++CpiC  p +
  CDO71385.1 35 DSCPICLNPFD 45
                67888877765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
                ETTEEEEEE-H CS
  zf-C3HC4_3 17 llpCgHlvlCe 27
                l+ CgH+ +C 
  CDO71385.1 72 LVACGHI-FCR 81
                689****.996 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.012
                 HHHTT-B-TTT--B-- CS
  zf-C3HC4_3  33 llkrkkkCpiCrrpie 48 
                 ++ r+ +Cp Cr   +
  CDO71385.1 108 IQGRHGSCPSCRNVFS 123
                 4448899*****8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1572.24
//
Query:       CDO71386.1  [L=500]
Description: hypothetical protein BN946_scf184908.g144 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-05   23.0   0.0    3.6e-05   22.5   0.0    1.1  1  tRNA-synt_2c  tRNA synthetases class II (A)
      0.009   16.1   0.0      0.027   14.6   0.0    1.7  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi
  ------ inclusion threshold ------
        9.8    6.6   6.3         89    3.5   6.3    2.3  1  DHHA1         DHHA1 domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     6e-09   3.6e-05     486     534 ..      88     137 ..      65     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6e-09
                   EEEESEEXXXXSSSSCSXXXEEEEESS.EEEEESEEEEETTEEEEEXSS. CS
  tRNA-synt_2c 486 gvvLdrTpfYaesGGqigDeGliekeg.aefrvkdvqkakgvvlhkgkle 534
                    vvL  T  ++e+GGq +D G++++++     v+++++ +g  +h ++l+
    CDO71386.1  88 EVVLHDTIIFPEGGGQPADVGILTSSDgDLWDVVEAKRHGGHAVHYVRLK 137
                   69*******************99887725579*************99986 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.4e-06     0.027       4      30 ..     267     293 ..     264     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.4e-06
                 EEE.TT.EEEEESS---SBGGGC-SEEE CS
    tRNA_SAD   4 vsi.GdisvelCgGtHvpnTgeIgafki 30 
                 v i G ++ ++C+GtH+p++  +++f +
  CDO71386.1 267 VVIdG-VDRNPCCGTHLPSIHNLQLFLL 293
                 44525.799**********999888865 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   6.3     0.015        89       2     134 ..     347     494 ..     346     498 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.015
                 HHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHH...HHHHHTHG.....BTTCEEEEEEEECTEEEEEEEESSH CS
       DHHA1   2 eslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgia...adklkskl.....kkpvivfvakeegdkvkvsarskkd 92 
                 ++  eerk++ k +e+l+ +la++ a+e+ +     +g  +++ +  ++  a+al+ +    + + sk+     ++p  v++++     +  sa ++  
  CDO71386.1 347 QQVVEERKKATKRVEDLEAELAAAIASEIAAC-APREGGELVLRRHRTDDSATALAFLsaiSTAFVSKHvesgsTSPYLVVLSSSP--SAQTSASTTVV 442
                 56778899999999999999988888888654.34448888888886666666666554444444444444432223333333332..33333333322 PP

                 ......SS-HHHHHHHHHHHTTCCEEEE.TCEEE..EEE.EHCHHHHHHHHH CS
       DHHA1  93 ......gvdagelakeaaaklgggGGGH.dlAaG..agi.paekleealeal 134
                       + ++ ++ +++ akl+ +GGG+ +  +G  +g+ + ++  +al+a+
  CDO71386.1 443 lvfgsgDQKVKDVGEALKAKLNVKGGGKgPRWSGkfTGVwKDGREGAALAAI 494
                 5566665555555555555*********998888665554566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3514.83
//
Query:       CDO71387.1  [L=492]
Description: hypothetical protein BN946_scf184908.g145 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-39  134.0  29.8    2.5e-37  128.6  29.0    1.7  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6  29.0   1.4e-41   2.5e-37       2     352 ..      61     431 ..      60     432 .. 0.84
   2 !   12.2   0.0   3.5e-06     0.062     115     187 ..     409     480 ..     408     489 .. 0.71

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 1.4e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +++++l++++r+++++a      +dl++ ++e+++ll++ ++g++++++p   + + +G  + +l +++++++  ++l  ++ ++   l+ r++ G+ +
  CDO71387.1  61 IVIYILNYIDRNNASAARLRGFEQDLNLKGQEFNTLLSILYVGYILMQIPSNMFLNYIGKPSiYLPCCMIVWGMISTLTGITKNFVGALLTRFFLGFVE 159
                 6789999999999888886699*************************************9999************777776466559************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpe.epperkrkspkeee.. 188
                 +a+fp+++ l+++w++++e g+ +++ls g+ ++ ++g l+++ +++          Wr++fyi +++++++++++++ lp+ +++++ + sp+e +  
  CDO71387.1 160 AAFFPGALFLLSKWYKRSELGMRTAILSCGSLISNAFGSLIASGILDGMEgalghaaWRWLFYIEGALTMFVAICAIFILPDfPATSHTWLSPEEVRla 258
                 **************************************9999988855557999999*****************9999995424455556666666566 PP

       MFS_1 189 ..............kgtgpaplvp......awkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgailallagr 266
                               +       ++      ++ + ++d  +w +l+ +l+   ++s+ + +++p+ l  ++g+s   +++ll a +++++ i+a++  r
  CDO71387.1 259 ekrmeedvgvgdenE-------TEsggqlhGLAMAFTDWKVW-WLALALTSL-VVSLsFNAFFPT-LSATMGYS-STITLLLCAPPWVFATIVAFCMCR 346
                 666665655333321.......22446666799999999996.555555555.55555*******.5*******.7999999***************** PP

       MFS_1 267 lsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla..ppeeagtasglfntagslggalg 352
                  sd++ r+r++ +a++l++ ++ +++ +++  s ++ +++l+l+   ++  f+++l+++s+++  pp++++ a++++n +++lg + g
  CDO71387.1 347 HSDKT-RERFWHIAIPLCFGIVGFIIAISTM-SLAARYISLFLMAQSYAG-FIIFLTWVSNSIprPPSKRAVALAFINAFSQLGNIAG 431
                 ****5.5799999999999999999999999.555555566665554443.89**********8888*****************9987 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.5e-06
       MFS_1 115 pkeergraigllsagfslGailgpllggllasslgWrav..fyilaivsllafvlfllllpeepperkrkspkee 187
                 p+++r+ a+++++a+++lG i g  + +    ++g +++  + i+     l++++ +++ +  +++++ +++ke+
  CDO71387.1 409 PPSKRAVALAFINAFSQLGNIAGSYVWP---KNWGPTYAhsYAICISTNGLCIIMCYIFKRHLEKKNREFAKKEQ 480
                 789********************55544...9999555555***********99744444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3181.60
//
Query:       CDO71388.1  [L=864]
Description: Glycoside Hydrolase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-09   35.9   0.0    2.9e-08   34.4   0.0    1.9  1  Glyco_hydro_2    Glycosyl hydrolases family 2
      2e-05   25.1   0.3       0.12   13.0   0.1    3.0  3  Mannosidase_ig   Mannosidase Ig/CBM-like domain
      0.001   19.0   0.1     0.0024   17.8   0.1    1.5  1  Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding 
  ------ inclusion threshold ------
      0.057   12.5   0.2       0.27   10.3   0.2    1.9  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
      0.067   13.0   0.0       0.21   11.3   0.0    1.9  1  Ig_mannosidase   Ig-fold domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     8e-12   2.9e-08       1     110 []     195     302 ..     195     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 8e-12
                    EECCCEEEEEEEETCSEEEEEEEEEEEEECSSSSCEEEEEEEEETTSTEEEEEEEEEEEESTT-EEEEEEEEEES--BBEC...CCB--EEEEEEE CS
  Glyco_hydro_2   1 vhIedvfvttdlsddksakvevevelendsdksvevtleteikdaegkkvkeessvlslgngetksiklelevknpklWsp...etPnLYtlkvel 93 
                    v+I+d+ +++ ++++  a+++v+ el++++++ ++v++     d+egk++  +s  + +++  +     +l+     lW+p   +++  Y +++++
     CDO71388.1 195 VRIADIDIRPRVNEQLGANLDVTFELSSNTQSIASVSV----RDPEGKVIIGQSNITIKSERADAHF--KLSAGVLDLWYPvgyGKQPIYSVEIQI 284
                    79*************88888888888999999999999....6667777776666666655555544..33444459******************* PP

                    .EETTEEEEEEEEEE-B- CS
  Glyco_hydro_2  94 .dkdgkvidevstrfGfR 110
                     dkdg+ +d++s+rf fR
     CDO71388.1 285 tDKDGDLLDRKSQRFAFR 302
                    *****************9 PP

>> Mannosidase_ig  Mannosidase Ig/CBM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         5   1.8e+04      19      38 ..     280     298 ..     278     316 .. 0.73
   2 !   13.0   0.1   3.3e-05      0.12       2      30 ..     687     715 ..     686     726 .. 0.87
   3 !    9.0   0.0   0.00057         2      75      95 .]     762     782 ..     761     782 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5
  Mannosidase_ig  19 lelrlidltgkllaetsttp 38 
                     +e+++ d +g+ll ++s ++
      CDO71388.1 280 VEIQITDKDGDLLDRKS-QR 298
                     67777788888887777.43 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.3e-05
  Mannosidase_ig   2 klevwvvsdllepvqgtlelrlidltgkl 30 
                     +l +w+++++lep +++le++++d++ ++
      CDO71388.1 687 VLAIWGTNSTLEPKRAVLEVTAFDVEVAD 715
                     689*********************97665 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00057
  Mannosidase_ig  75 ledatgevlatnvywpvplKd 95 
                     l+da+g+vl +++ wp+p+K+
      CDO71388.1 762 LLDADGTVLGRYSNWPEPYKY 782
                     6789****************9 PP

>> Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   6.6e-07    0.0024      73     145 ..      74     148 ..      58     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.6e-07
                      EEE-HHHHHS.EEEEEESEEESEEEEEETTEEEEEEE-TTS-EEEEGGGGS-SEEEEEEEEE.ESTTGGGGGBEC CS
  Glyco_hydro_2_N  73 feidskwaek.kvrllFegvtsasevwvngqevgkrqgsylpfefDltpylseGknriavkv.lkwsdgsyieDe 145
                      f   ++ ++  +v l+F+g ++   v +ng+ + + ++ +++  + ++++l+eG+n ++ +    +++g  ie +
       CDO71388.1  74 FPASEGEVDAqNVDLVFDGLDTFAAVELNGHLILNTENQFVSHRVPVKNHLKEGENELVLTFaSAFRKGREIEQQ 148
                      55555555554899******************************************8887653445566666655 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   7.5e-05      0.27      63     139 ..     377     439 ..     345     483 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.5e-05
                      HHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT-CCCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSCHH CS
  Glyco_hydro_2_C  63 evyelcDeyGlyvidEanlethglaqklgeiepsynvladnpewlkavldrieelverdkNHpsviiWSlgNEsgag 139
                       +y++cDe+G++v ++     +g+           +++a +  ++++ ++ +e++v+r + Hpsv+i    NE ++ 
       CDO71388.1 377 AFYDICDELGIMVWQDFM---FGCG----------QYPAYDSFTKSVEIE-AEQNVKRLRHHPSVVIFAGNNEDYQI 439
                      567777777777665432...2222..........334444444444444.7999*****************99754 PP

>> Ig_mannosidase  Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     6e-05      0.21       6      59 ..     793     847 ..     787     857 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6e-05
  Ig_mannosidase   6 laskvtevsggfkvtlsadavAlfVwLe.lsgvdgrFsdNgFdLlpgesktvtft 59 
                     +++++++++   + +lsa ++ +   L+  +  d+r+sd ++dL+pg + +v+++
      CDO71388.1 793 IVVTPDADGTRDRAELSAARPIKGMVLDvDGPDDARWSDQAIDLVPGDPQVVFVE 847
                     355666677889999*************656667***************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5654.40
//
Query:       CDO71389.1  [L=212]
Description: hypothetical protein BN946_scf184908.g147 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-44  150.6   1.1      5e-44  149.8   0.2    1.7  2  Ras           Ras family
    1.1e-13   51.4   0.0    3.2e-13   50.0   0.0    1.7  2  Roc           Ras of Complex, Roc, domain of DAPkinase
    1.2e-05   24.8   0.0    1.6e-05   24.5   0.0    1.1  1  Arf           ADP-ribosylation factor family
    0.00014   21.8   0.0     0.0099   15.8   0.0    2.3  2  RsgA_GTPase   RsgA GTPase
    0.00016   21.3   0.5    0.00034   20.2   0.5    1.5  1  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0044   16.6   0.1      0.093   12.3   0.1    2.2  1  FeoB_N        Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.031   14.4   0.0    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
      0.045   13.7   0.1       0.16   11.9   0.1    1.8  1  ATPase_2      ATPase domain predominantly from Archaea
      0.065   13.3   0.1       0.16   12.0   0.0    1.7  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.53   1.1e+03       1      14 [.      10      23 ..      10      23 .. 0.91
   2 !  149.8   0.2   2.5e-47     5e-44       6     161 ..      40     194 ..      39     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.53
                EEEEEESTTSSHHH CS
         Ras  1 KlvlvGdsavGKts 14
                K+ ++G+++vG ++
  CDO71389.1 10 KIAVLGSRSVGQSA 23
                899********985 PP

  == domain 2  score: 149.8 bits;  conditional E-value: 2.5e-47
                 ESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.T CS
         Ras   6 GdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.e 103
                 G s+ GK+sl+++f++++F e+y +Ti +  ++k+++++g ++  +i DTAGq+e++ l+++   + +g +lvy++t+r+sf+ v+  +++i + +  +
  CDO71389.1  40 GPSSAGKSSLVIQFIENHFVESYYPTI-ESVFNKTVSYKGADYDCDIIDTAGQDEYSILNSKHAIGIHGYVLVYSVTNRKSFDMVRIVYDKIINFCGmN 137
                 7899***********************.99*******************************************************************99 PP

                 TSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 104 nvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 ++p+v+vG K+Dl++ r+v+ +ege+la +lg++f+etSAk+n nv+++fe +l ei+
  CDO71389.1 138 SIPCVVVGSKIDLQN-RQVDSDEGERLATDLGAAFVETSAKNNVNVSKVFELCLAEIE 194
                 9*************7.***********************************9998886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   3.5e+03       1      13 [.      10      22 ..      10      23 .. 0.90
   2 !   50.0   0.0   1.6e-16   3.2e-13       6     120 .]      40     150 ..      38     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
                EEEEESSTTSSHH CS
         Roc  1 KvvlvGdsgvGKt 13
                K+ ++G  +vG +
  CDO71389.1 10 KIAVLGSRSVGQS 22
                899********87 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 1.6e-16
                 SSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHHHHHH CS
         Roc   6 GdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlkeWlke 101
                 G s++GK+sl+ +f+e++f e++ +ti   f +k+v + kg        ++  +i DtaGq++++ l++ +  + + ++lvy    ++s++ ++  +++
  CDO71389.1  40 GPSSAGKSSLVIQFIENHFVESYYPTIESVF-NKTV-SYKG-------ADYDCDIIDTAGQDEYSILNSKHAIGIHGYVLVYSvtnRKSFDMVRIVYDK 129
                 999************************9876.5665.4555.......357799****************************8653446788999**** PP

                 HHHHCS..SS-EEEEEE-TTT CS
         Roc 102 lkkvag..kspvilvgnkiDl 120
                 + + +g  ++p+++vg+kiDl
  CDO71389.1 130 IINFCGmnSIPCVVVGSKIDL 150
                 ***987424599*******95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   7.9e-09   1.6e-05      24     137 ..      43     160 ..      39     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 7.9e-09
                 TSSHHHHHHHHHHSSCEE.CSSSSSEEE.EEEEET..TEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEE CS
         Arf  24 naGKtTilkklkleelvt.tvPTigfnv.eeleik..nlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkeval 118
                 +aGK+ ++ ++ ++++v+   PTi +   +++++k  +++  + D  Gq++   l ++    +++ + v  +++r+ ++  +   +++++   +++++ 
  CDO71389.1  43 SAGKSSLVIQFIENHFVEsYYPTIESVFnKTVSYKgaDYDCDIIDTAGQDEYSILNSKHAIGIHGYVLVYSVTNRKSFDMVRIVYDKIINFCGMNSIPC 141
                 79*********9999887589***9765278999722466789******************************************************** PP

                 EEEEE-TTSTTSS-HHHHH CS
         Arf 119 lvlaNKqDlpealseeelr 137
                 +v++ K+Dl++   +++  
  CDO71389.1 142 VVVGSKIDLQNRQVDSDEG 160
                 *********9876555444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.022        44     106     121 ..      40      55 ..      38      75 .. 0.86
   2 !   15.8   0.0     5e-06    0.0099       7      96 ..      96     188 ..      81     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.022
                  CSTTSSHHHHHHHHCT CS
  RsgA_GTPase 106 GqSGvGKStLinallp 121
                  G+S +GKS+L+ ++++
   CDO71389.1  40 GPSSAGKSSLVIQFIE 55 
                  9*********977665 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 5e-06
                  EETTTTEES--EEEEEEESTT.TT--HHHH..HHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase   7 elvrpkvaNvdqllivvslke.pelslnll..drfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkel 96 
                   l  +++  +   ++v s+++ +++++ ++  d+++ ++  + i+ v+v +KiDl +++ + +e +   ++lg +++ +sak++ +++++ el
   CDO71389.1  96 ILNSKHAIGIHGYVLVYSVTNrKSFDMVRIvyDKIINFCGMNSIPCVVVGSKIDLQNRQVDSDEGERLATDLGAAFVETSAKNNVNVSKVFEL 188
                  566666777888899999875145666554459***************************9*********************99999988765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.5   1.7e-07   0.00034      58     185 ..      71     186 ..      63     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-07
                 CEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHH.HHHHH CS
    GTP_EFTU  58 saaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeivee.vkqkl 150
                  +++s++  +++y + +iDt G  ++s   ++ +  ++g+vlv ++++      v     ++++ +  + +p +v+  K+D  + +++    e + ++l
  CDO71389.1  71 NKTVSYK--GADYDCDIIDTAGQDEYSILNSKHAIGIHGYVLVYSVTNRksfdmVRIVYDKIINFCGMNSIPCVVVGSKIDLQNRQVDSDEGErLATDL 167
                 4566666..*************************************9666677799999**********************986655543322022222 PP

                 HHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU 151 srkeeklekygekgekevpvvfgSalkgegvktll 185
                                    +v +Sa+++ +v++++
  CDO71389.1 168 ----------------GAAFVETSAKNNVNVSKVF 186
                 ................1235555555555555555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   4.6e-05     0.093       7     153 ..      40     186 ..      38     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.6e-05
                 ESTTSSHHHHHHHHHTTSEEEEESTTS.SSEEEEEEEEETTEEEEEEE----..SSSSSSSHHHHHHHHHHH....CTSSSEEEEEEEGGGHHHHHH.H CS
      FeoB_N   7 GnpnvGkttlfnaltgakqkvgNwpGv.tvekkegklklkgkeveivDlPGi..Yslsayseeekvardfll....eeepdvvvnvvdatnlernLy.L 97 
                 G   +Gk++l+ +  + +   + +p + +v +k++++k ++++++i+D  G   Ys+ +  +   +   +l+    +++         +  + r +y  
  CDO71389.1  40 GPSSAGKSSLVIQFIENHFVESYYPTIeSVFNKTVSYKGADYDCDIIDTAGQdeYSILNSKHAIGIHGYVLVysvtNRK---------SFDMVRIVYdK 129
                 6678899999999999999999999875788999999999999999999997667775443333333333331111322.........22233333312 PP

                 HHHHHHTT.SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N  98 tlqllelg.vpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                 +++ + ++ +p+v++  +id  +++  + + ++L++ Lg   v+tsak++ +++++ 
  CDO71389.1 130 IINFCGMNsIPCVVVGSKIDLQNRQVDSDEGERLATDLGAAFVETSAKNNVNVSKVF 186
                 34555565478999999999999999999999*****************99999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1         2   3.9e+03       1      13 [.      10      22 ..      10      23 .. 0.89
   2 ?   14.4   0.0   1.5e-05     0.031       6      72 ..      40     102 ..      39     159 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
                EEEEEESTTSSHH CS
    MMR_HSR1  1 evaivGrpNvGKS 13
                ++a++G   vG S
  CDO71389.1 10 KIAVLGSRSVGQS 22
                699********99 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.5e-05
                 ESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHH CS
    MMR_HSR1   6 GrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkafla 72 
                 G + +GKS+L+ + ++++   s +p t   +  ++v++kg   ++ ++Dt+G  +    e ++ ++ +a
  CDO71389.1  40 GPSSAGKSSLVIQFIENHFVESYYP-TIESVFNKTVSYKGadYDCDIIDTAG-QD----EYSILNSKHA 102
                 899************9866555555.4444444445544434889*******.32....2233333332 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   7.8e-05      0.16      26     115 ..      39     195 ..      39     200 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie..........eeeekkklekal................................ 82 
                 +Gp + GK++L+ ++ien+    +   yy  ++++++++++ + +                                                      
  CDO71389.1  39 TGPSSAGKSSLVIQFIENH----FVESYYPTIESVFNKTVSYK-GadydcdiidtA----------Gqdeysilnskhaigihgyvlvysvtnrksfdm 122
                 59****************9....56678888888888888777.313333333331..........233333333444556666666666666666666 PP

    ATPase_2  83 .........................................giavpkaeleeilk...eksklvfkaielllekikk 115
                                                          +    ++ + ++++   +++ +v k +el l++i+k
  CDO71389.1 123 vrivydkiinfcgmnsipcvvvgskidlqnrqvdsdegerlA----TDLGAAFVEtsaKNNVNVSKVFELCLAEIEK 195
                 666666666666666666666666666666666666633332....3333222223335556666666666666665 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.93   1.9e+03      54      78 ..      75      99 ..      50     136 .. 0.57
   2 ?   12.0   0.0   8.2e-05      0.16      43      99 ..     128     188 ..     112     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.93
  MMR_HSR1_Xtn 54 vYipclyvlNKiDlisleeldelar 78
                  +Y+ + y    iD++ ++e + l++
    CDO71389.1 75 SYKGADYDCDIIDTAGQDEYSILNS 99
                  3444444444444444444444444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 8.2e-05
  MMR_HSR1_Xtn  43 DdlidviegnrvYipclyvlNKiDl....isleeldelare..pnsvviSaekelnldeLkek 99 
                   D++i++   n   ipc++v  KiDl    ++ +e ++la++     v +Sa++++n+ ++ e 
    CDO71389.1 128 DKIINFCGMN--SIPCVVVGSKIDLqnrqVDSDEGERLATDlgAAFVETSAKNNVNVSKVFEL 188
                   5555555444..38**********988888899999999965568889*********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1437.30
//
Query:       CDO71390.1  [L=137]
Description: hypothetical protein BN946_scf184908.g148 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-16   57.8   4.7    7.3e-16   57.8   4.7    1.9  2  Spo12     Spo12 family


Domain annotation for each model (and alignments):
>> Spo12  Spo12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.1   1.9e+03      21      30 ..      57      66 ..      53      67 .. 0.76
   2 !   57.8   4.7   4.1e-20   7.3e-16       1      34 [.      68     102 ..      68     103 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.1
       Spo12 21 Klfkak.skPt 30
                K f ak  +Pt
  CDO71390.1 57 KKF-AKsHNPT 66
                788.6659998 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 4.1e-20
       Spo12   1 vSPTDnllSPCsqKLnahKsKlfkak..skPtkllF 34 
                 vSPTDnl++PCsqKLna K+K+f +k  skP+ +lF
  CDO71390.1  68 VSPTDNLMTPCSQKLNATKKKHF-TKgvSKPMPSLF 102
                 8**********************.8889*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1020.89
//
Query:       CDO71391.1  [L=906]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-66  222.6   0.0    4.2e-66  221.9   0.0    1.3  1  Chitin_synth_1   Chitin synthase
    9.6e-30  102.4   0.1    3.4e-29  100.6   0.1    2.0  1  Chitin_synth_1N  Chitin synthase N-terminal
      2e-25   89.4   1.2    4.6e-20   71.7   0.0    2.3  2  Chitin_synth_2   Chitin synthase
    3.9e-09   36.7   0.1    3.9e-09   36.7   0.1    2.4  2  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   0.0   9.4e-70   4.2e-66       2     163 .]     218     389 ..     217     389 .. 0.95

  Alignments for each domain:
  == domain 1  score: 221.9 bits;  conditional E-value: 9.4e-70
  Chitin_synth_1   2 ynEdkellarTLkgvmkNieelkkrkkskvwg......kdsWkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttq 90 
                     ynEdk+l+arTL+gvm Ni++++k+k+sk+w+        +W++i V+++ DG e++d+++ld+la++gvyq+gv+kk+v+gke++ah+feyttq
      CDO71391.1 218 YNEDKTLYARTLHGVMLNIRDICKTKQSKYWRrsaeegVPGWQRITVALIVDGLEPMDKTVLDILATVGVYQDGVMKKQVDGKETVAHIFEYTTQ 312
                     9******************************9666555556****************************************************** PP

  Chitin_synth_1  91 lsvde....elklkenekslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                     lsvd      + ++++ ++lvpvq+++++k kn+kkinShrWlfna++++l+Pe+cvl+d+Gtkpg+ks+y+lw+af
      CDO71391.1 313 LSVDAtpqlVVPHADDPNNLVPVQIILVIKAKNQKKINSHRWLFNAIGKMLEPEICVLIDAGTKPGRKSIYYLWEAF 389
                     ***776776777777779*********************************************************98 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.1   7.7e-33   3.4e-29       1      73 []     141     216 ..     141     216 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 7.7e-33
  Chitin_synth_1N   1 tkkvkLlngnlvldlpvpkkllkalp..eeekeseEfthmRYtAvTcdPddft.kegytLRqalygReteLlIviT 73 
                      t+kvkL++gn++ ++pvp+ + +a++   ++++++Ef+hmRYtA+TcdPddft ++gy+LR++ y+R+teLlI++T
       CDO71391.1 141 TRKVKLTKGNFITEYPVPSPVFSAIEakWQNSKTTEFSHMRYTAATCDPDDFTeANGYSLRTKIYNRQTELLIAVT 216
                      69************************6433367********************99********************9 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0     1e-23   4.6e-20     203     451 ..     366     636 ..     346     688 .. 0.72
   2 !   16.4   0.3   6.2e-07    0.0028     420     493 ..     690     761 ..     682     789 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1e-23
  Chitin_synth_2 203 eivlmvdadtkvapdsltrlvaalvkdpeilglcGetk..iankke..swvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgad 293
                     ei++++da tk    s+  l  a+ +dp++ g+cGe +  i+  ++    + a q fey +s  l k +es fG v+ lPG fs+yr +a  g  
      CDO71391.1 366 EICVLIDAGTKPGRKSIYYLWEAFYNDPHLGGCCGEIHamIQGGRKllNPLVAAQNFEYKMSNILDKPLESSFGYVSVLPGAFSAYRYRAILG-R 459
                     899*********************************862255444411446789************************************998.3 PP

  Chitin_synth_2 294 gkwvPilvspeiveeysenvvd..tlhkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinst.......vhnl 378
                        +    ++++ ++   + +    +  kn+ +l edr l   l+ k  ++   ++v+ +k++t +P++   l+ qrrrw+n +       + n+
      CDO71391.1 460 PLEQYFHGDHSLADRLGPKGIYgmNIFTKNM-FLAEDRILCfELVAKANDQWTLTYVKPSKAETDVPESAPELIGQRRRWLNGSfaasvyaIVNF 553
                     3344556678899999888775115678996.689****98468999999********************************6422221113444 PP

  Chitin_synth_2 379 lelvlv.rdlcGtfcfsmrfvv.fieligtvvlPvaiaftlylivasilk........sklvpviplvllaivlGlpailivl 451
                     ++l +  + +  +f f ++ +   ++li t    + i +t+++i+  + +        +++++ ++lvl  i l + a+ +vl
      CDO71391.1 554 FKLYRSgHGIVRMFFFHVQALYnVFNLIFTWFALANIWLTFAIIIDLLPSqniiffgtATITHWVNLVLKWIYLAFLALQFVL 636
                     45544423466788898887652469999999999999999999865433111112224555566666655555555554444 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.2e-07
  Chitin_synth_2 420 ivasilksklvpviplvllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswGetr 493
                     i++s++++ +  +i+ +l    +Gl     +l    +++   +  yl+  P f+ vl +yaf +l d swG   
      CDO71391.1 690 IIKSFFTPPIGALIAAMLS--TFGLWLFASLLYRDPWHIFSSMFQYLCLAPSFTNVLNVYAFCNLHDVSWGTKG 761
                     4444554333333333333..356666666677789***********************************765 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   8.7e-13   3.9e-09       2     195 ..     368     596 ..     367     598 .. 0.76
   2 ?   -3.8   5.0       2.3     1e+04     129     177 ..     613     674 ..     602     748 .. 0.56

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 8.7e-13
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm..nva...nwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq.... 85 
                       +l+Da t + + +++++ + +  +p  + ++g + +m  +++   n l+  + ++++ + + d +  +++g v  ++G+ ++ r +a+     
       CDO71391.1 368 CVLIDAGTKPGRKSIYYLWEAFYnDPHLGGCCGEIHAMiqGGRkllNPLVAAQNFEYKMSNILDKPLESSFGYVSVLPGAFSAYRYRAILgrpl 461
                      589***************8866648***********999744412266677777779*********************************9999 PP

  Glyco_trans_2_3  86 ............evg.........gwdgdessvsEDfdmglrlqrkG...yrvrfvpeslvkekspltlraalrQrkRwayGcel...eklill 152
                                  ++g         + +  + +++ED  +++ l +k    +++ +v  s   + +p +    + Qr+Rw+ G       ++i  
       CDO71391.1 462 eqyfhgdhsladRLGpkgiygmniFTK--NMFLAEDRILCFELVAKAndqWTLTYVKPSKAETDVPESAPELIGQRRRWLNGS-FaasVYAIVN 552
                      999999887777555887776664444..78************888746677777777799*********************5.3322333322 PP

  Glyco_trans_2_3 153 vrllgylgsllwsalplhl.allllfsllalalvlllllllaal 195
                      +  l   g+ ++  +++h+ al+ +f+l+ ++++l  ++l++a+
       CDO71391.1 553 FFKLYRSGHGIVRMFFFHVqALYNVFNLIFTWFALANIWLTFAI 596
                      22223357778889999994566666666555555555666655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.3
  Glyco_trans_2_3 129 tlraalrQrkRwayGc......eleklil...........lvrllgylgsllwsa.lplhlallllf 177
                      t+  +++   +w+y +            l           + +       +l+++ l+++lal++++
       CDO71391.1 613 TITHWVNLVLKWIYLAflalqfV-----LalgnrpkgermTYNITMGVYGILAVYlLVCSLALTVVA 674
                      77888888888888875443330.....123333333332222223334444444244555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 5721.28
//
Query:       CDO71392.1  [L=188]
Description: hypothetical protein BN946_scf184908.g150 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00014   22.0   0.1    0.00022   21.3   0.1    1.3  1  GST_C            Glutathione S-transferase, C-terminal domain
    0.00045   20.2   0.2    0.00099   19.1   0.2    1.6  1  GST_C_2          Glutathione S-transferase, C-terminal domain
     0.0091   16.0   0.0      0.015   15.3   0.0    1.4  1  Molydop_binding  Molydopterin dinucleotide binding domain
     0.0093   16.1   0.0      0.016   15.3   0.0    1.3  1  GST_C_3          Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     5e-08   0.00022      35      90 ..      16      76 ..       7      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5e-08
                HHHHHHHHH.TSSSSSTT.SSCHHHHHHHHHHHHHHHHTTTTT...TTTSHHHHHHHHHHH CS
       GST_C 35 lsaleeelk.kqdylvGd.kltlADialvpilnwlqrlglafg...qekfpnlkawlerim 90
                l+ lee+l+ ++++l+++  ++lADi + + + w+qr++   +    +kfp+  aw++r++
  CDO71392.1 16 LALLEEQLAdGRKWLMDTeTPSLADITVQFSWAWMQRFRSLRDlfdGAKFPASIAWISRVS 76
                7889************86269*****999999999999887777889**********9986 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   2.2e-07   0.00099      11      48 ..      12      54 ..       7      74 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
                CCHCHHHCTTT---SS...CTTCS--HHHHHH...HHHHHHHH CS
     GST_C_2 11 ldaaldaleahLadsp..flfGdqptlaDial...apflvrlr 48
                l+++l++le++Lad++  ++  ++p+laDi++   +++ +r+r
  CDO71392.1 12 LVSHLALLEEQLADGRkwLMDTETPSLADITVqfsWAWMQRFR 54
                5789*************777777******99833334555554 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.4e-06     0.015      32      95 ..     113     179 ..     103     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.4e-06
                      EEEEHHHHHHHT--TT-EEEEE.ETTEEEEEEEEEESSB-TTEEEEESSHCC.......S-GHCTS- CS
  Molydop_binding  32 veinpedAaalGikdGdlVeve.srrGsvevrakvtervrpGvvfmpfgwwe..agekggnaNaltd 95 
                      v   ++dAa+lG+k+G+ V v+ +++G+v    k+    ++ vv+ ++g       ++   +N +++
       CDO71392.1 113 VGFDAADAARLGLKEGQHVSVTpTDNGKVPTIGKLVALNHEEVVVQTQGSAGkpVHCHFPRLNFIVK 179
                      556789***************9789999887777776666666666666655555555555555555 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.7e-06     0.016      22      88 ..       5      77 ..       2      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
                HHHHHHHHHCHHHHHHHHHHCHGTSSSS.TTS--HHHHHHHHHHHHHHHH.....TCC..CC-HHHHHHHHHHHT CS
     GST_C_3 22 kefleerlpkflkyfekvlkkkgggylv.gdklTyADlalfqvldgleea.....eal..kkfpklkalyervea 88
                + ++++ l  +l+ +e+ l+ +g ++l+  ++ ++AD+++      ++++          +kfp   a++ rv++
  CDO71392.1  5 QPVVKSWLVSHLALLEEQLA-DGRKWLMdTETPSLADITVQFSWAWMQRFrslrdL-FdgAKFPASIAWISRVSE 77
                55677778889*********.8999***8899******775444444444444642.25799********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1380.13
//
Query:       CDO71393.1  [L=609]
Description: hypothetical protein BN946_scf184908.g151 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.5e-138  460.6   0.0   6.6e-138  460.3   0.0    1.1  1  CLPTM1    Cleft lip and palate transmembrane protein 1 (CLPTM
    0.00046   19.9   0.2     0.0013   18.5   0.2    1.8  1  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.3   0.0  7.4e-142  6.6e-138       5     429 .]      33     503 ..      29     503 .. 0.90

  Alignments for each domain:
  == domain 1  score: 460.3 bits;  conditional E-value: 7.4e-142
      CLPTM1   5 lrvlllyllvslvt.lsgk..ansppceeepsees...............tpkclapllkegekldlsvyvseseefekl...........kse.eklv 73 
                  +v+l+ ++++lv+ ++g+  +++pp++ + +++s               +p+++ p ++ g +l ++v++s+s++ + +           + + e + 
  CDO71393.1  33 QQVVLAIAVSQLVSkFFGSkqQQPPPVDPTVTQASvpqahvpgqapvvnaIPTHAVPAWPLGIPLAMHVHLSTSPTGDVFsgkwtagyrkdQ-DaELPS 130
                 56666777777777655553444444442222233566777778888888**********************99996666667899998642.244445 PP

      CLPTM1  74 lkeknlkygdweesreveltiklpkevqnNgtlyahvfltksgssldpkdekydkksvvhktkqLtkylpkkkekktknLlkekeeeeeeeekeekpvi 172
                 l  +n+++gdw+e+r +++t+++p +vqnNgtl+a vfl+++g+s+dp+d k+d++ v+h++++ tkylpk k++k+knLl+++ +e+++e+ ee++vi
  CDO71393.1 131 LVWNNITFGDWNEKRVADFTVNIPPSVQNNGTLWADVFLVRDGASPDPSDAKFDPRAVHHVRTPVTKYLPKAKVRKQKNLLSGTGNEQDNEDPEERDVI 229
                 55568999***********************************************************************************9******* PP

      CLPTM1 173 vsywkpnltlslvsdktalskeqlppevaeyikleetg.....gqYlPilfvnefwqlkkdlveinetvkelpLtitlsplslwklqlyasmeeslkqq 266
                 v++w++nltl+l+sd+ +++ +q++p+ a+yi+l++++      +Y+Pi+f+nefw+l+++++e+n+++ +lpL+i+++p+s+wk++++a++++s++++
  CDO71393.1 230 VTHWHNNLTLALISDNPVIPLAQVQPASAKYIELTPERdatgrPFYKPIIFPNEFWHLRSQYIEVNSSTPSLPLQIEFQPMSYWKFTIFAALTQSFAEA 328
                 *************************************99**999******************************************************9 PP

      CLPTM1 267 akl..gfsekeideiKeilldtnpyLLalTivVsllHsvfefLAFknDisfWrkkksleGlSvrsila....nvfsqlvifLYLlDn..eTSwlilisq 357
                 ak+  g+s +e+de+K++l++tnpy+LalT++Vs+lH+vfefLAF++D+s+Wr+k++l+G+Svr++ +        +++i+LYL+Dn  +TSw+il+ +
  CDO71393.1 329 AKQqgGSSVAELDEVKRMLVETNPYFLALTALVSVLHVVFEFLAFSSDVSHWRHKQELVGVSVRTVSVidagASGLETIILLYLIDNseQTSWMILMGS 427
                 999856666********************************************************976333345689********************** PP

      CLPTM1 358 giGllielWKitkvvkvrlse..egs.lp.rlkfedkeklsesekkTkeYDeiAfkYLsyvlvPlligyaiYSLlY 429
                 giG+lie+WKitk+v++++ +   gs lp ++ ++dk+ lse+ekkT+eYD++Af+ + y+ +P+l+ y++YSLlY
  CDO71393.1 428 GIGILIEAWKITKAVDISIAPspAGSwLPyQILIKDKHVLSEDEKKTQEYDKLAFRIVAYFTIPCLAVYTVYSLLY 503
                 ********************97655589999********************************************9 PP

>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   1.4e-07    0.0013       5      39 ..     517     551 ..     510     566 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.4e-07
     PQ-loop   5 lgyislvlwlvsyiPQiikNykrkSteGlSilfll 39 
                 l ++  ++ ++++iPQ+i Nyk kS+ ++ +  ++
  CDO71393.1 517 LTSFVYMFGFAQLIPQLIINYKLKSVAHMPMKAMV 551
                 444555677899**************988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4632.69
//
Query:       CDO71394.1  [L=866]
Description: hypothetical protein BN946_scf184908.g152 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0061   16.5   0.3      0.013   15.5   0.3    1.4  1  GnsAB_toxin  GnsA/GnsB toxin of bacterial toxin-antitoxin sys


Domain annotation for each model (and alignments):
>> GnsAB_toxin  GnsA/GnsB toxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3     7e-07     0.013       3      28 ..     215     240 ..     214     253 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7e-07
                  HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  GnsAB_toxin   3 iEeLkkkAEeeiaeliakKiaELkKk 28 
                  +E+L++ AEe ia+   +K++EL+K 
   CDO71394.1 215 SEKLRNEAEEYIAQVTQQKVVELRKA 240
                  79**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5966.43
//
Query:       CDO71395.1  [L=560]
Description: hypothetical protein BN946_scf184908.g153 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-37  127.8   2.0    2.5e-37  127.8   2.0    2.3  3  MAS20          MAS20 protein import receptor
    1.2e-13   51.8   0.0    1.1e-12   48.6   0.0    2.2  2  SET            SET domain
     0.0037   17.2   1.8        2.6    7.9   0.1    2.9  3  PBAN           Pheromone biosynthesis activating neuropeptide
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.053   13.7   0.0    1.8  1  DUF2256        Uncharacterized protein conserved in bacteria 
       0.15   12.2   0.2       0.46   10.6   0.2    1.8  1  CbtB           Probable cobalt transporter subunit (CbtB)
        3.3    7.9   6.5       0.18   11.9   0.4    1.9  2  zf-MYND        MYND finger


Domain annotation for each model (and alignments):
>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   2.0   8.5e-41   2.5e-37       3     129 .]      16     150 ..      13     150 .. 0.89
   2 ?   -3.3   0.6         3   8.8e+03      47      72 ..     303     334 ..     284     338 .. 0.40
   3 ?   -2.2   0.1       1.4   4.3e+03      56      84 ..     527     556 ..     513     557 .. 0.65

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 8.5e-41
       MAS20   3 vaaaaflgYcvYFDrkRrsdpefkkklrerrkkqakaakeeeeaekaekkk.....kealeeakee.lptdaeevekfFleevqlGEellaq..geeee 93 
                 ++  ++++Y+vYFD+kRr+d ef+kklr+++kk +k+++++++a+++++++     k+++ + + e lp++++++e++F+ +vqlGE++++q  + +  
  CDO71395.1  16 TVLGGLVAYAVYFDYKRRNDTEFRKKLRKEKKKVTKKQANQAQAQAQAESAnsaeiKATILKIQGEeLPATPDDKEQYFVMQVQLGEQMAQQgpAFYLP 114
                 455789***************************9988888877777777667888855555555557*************************999**** PP

       MAS20  94 aaehlynAlkvcpqPqeLlqilqktlPeevfellle 129
                 aa ++++Al+v+p+P e+++++q+t+P+++f+l +e
  CDO71395.1 115 AAAAFFRALRVYPSPVEFIMMIQSTVPPPIFKLFME 150
                 ********************************9885 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
       MAS20  47 ekaekkk........kealeeakee.lptdaeeve 72 
                 +k++  +        k++++e   + lp++++++e
  CDO71395.1 303 TKRA--NllaarfvaKQIAHE-TVKlLPKKPKALE 334
                 2222..122433332322222.2224677776666 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
       MAS20  56 aleeakee.lptdaeevekfFleevqlGEe 84 
                 + +ea+   ++ d+++ve+f+ +e + GE 
  CDO71395.1 527 MEKEAEIAgVKGDESKVESFVRHEKAPGEG 556
                 323333336778999999999888888875 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.26   7.9e+02      67      94 ..      41      68 ..      20     134 .. 0.61
   2 !   48.6   0.0   3.8e-16   1.1e-12       4     166 ..     191     482 ..     189     484 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
                HHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 67 lakdqkqaekedtdaalkasskaesdln 94
                   ++k++ +++++++ +a+ +aes   
  CDO71395.1 41 KLRKEKKKVTKKQANQAQAQAQAESANS 68
                3334444444444444444444443332 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 3.8e-16
                 EEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.........................................HTEEEEEXGGXXGGSXHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   4 vfAtedIpkgeficeypeeiiltkdeadksele.........................................aylfslpeapknlaftkelakasas 61 
                 ++A +d+++g++i  y e++ +   +ad++++                                          + lf l          + +   ++ 
  CDO71395.1 191 LVAEKDFEPGDVI--YTENPAVVALDADLEGKGthcsycfrpieegkavtpkhdelgvaycsedcqlkgqlgwqNILFGL----------DPVLPPELD 277
                 79***********..**999*********99999**98888888888888777777776666665555555555444444..........466666777 PP

                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS.............X.................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............x.................................................... RF
         SET  62 tllqklakdqkqaekedtdaalkasskaesdln.............a.................................................... 95 
                 +++++l+ +q+q+ +e +++ +k + k ++ l+             +                                                    
  CDO71395.1 278 NGMSALTVEQRQKAQEPFADFIKNKTKRANLLAarfvakqiahetvKllpkkpkaleeelqgmadkdiynigdhverlrfvegsitdeevkllgavlgs 376
                 777778888888888888888888777777777555555444444404443444444454455555555555555555555555555666666666666 PP

                 .......XXHCCCCCHCCCHEEEE.............................................TEEEEEECCCGTTGGGCEEXSSSSEEEEEE CS
                 .......xxxxxxxxxxxxxxxxx.............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  96 .......skpeagafsaiagysid.............................................aralksgngagplarflNHsCdpNcnltvq 142
                        s                                                             ++a++ g+g++ + +++ HsCdpN + t+ 
  CDO71395.1 377 alpgveqS---------------VteerhaalvgkmaynaigvtpaggrdgrpvsgdrpedlertrtphGTARQLGSGIYLVSSYIAHSCDPNTTPTFP 460
                 66666552...............0333333333333333666777777777888888888888888888888999999999*************55555 PP

                 EETTSSEEEEEESSXBXTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 143 nvlrgprvavfAtrdIkkGeElti 166
                    + +++ ++At++IkkG+Elt+
  CDO71395.1 461 K--GTNELHLVATKPIKKGDELTM 482
                 5..********************7 PP

>> PBAN  Pheromone biosynthesis activating neuropeptide (PBAN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00087       2.6      76     134 ..      39      94 ..      12     110 .. 0.66
   2 ?   -0.9   0.0      0.44   1.3e+03      60      79 ..     154     173 ..     145     195 .. 0.63
   3 !    7.0   0.0    0.0016       4.8      78     134 ..     290     347 ..     280     359 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00087
        PBAN  76 erqadepetkvtkkiiftpklgrsvakpqtheslefiprlgrrlsedmpatpadqemyq 134
                  ++  + + kvtkk     +  ++ a+ ++ +s e+   + +   e++patp d+e y 
  CDO71395.1  39 RKKLRKEKKKVTKKQ---ANQAQAQAQAESANSAEIKATILKIQGEELPATPDDKEQYF 94 
                 222223333444443...2334455666678999*99*******************995 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.44
        PBAN  60 leaadalkfyydqlpyerqa 79 
                  eaa  +  yyd++p  r  
  CDO71395.1 154 AEAAARIEGYYDHFPPRRMN 173
                 367777889****9988743 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0016
        PBAN  78 qadepetkvtkkiiftpkl..grsvakpqtheslefiprlgrrlsedmpatpadqemyq 134
                 +a+ep +   k+     +l   r vak  +he+++++p+  + l e++    ad+++y+
  CDO71395.1 290 KAQEPFADFIKNKTKRANLlaARFVAKQIAHETVKLLPKKPKALEEELQG-MADKDIYN 347
                 466666665554444444323699**********************9975.68999986 PP

>> DUF2256  Uncharacterized protein conserved in bacteria (DUF2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.053       9      38 ..     223     254 ..     219     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
     DUF2256   9 iCavCgrpftwRkkWekdWde..VkyCSerCr 38 
                  C +C rp++  k    + de  V yCSe C+
  CDO71395.1 223 HCSYCFRPIEEGKAVTPKHDElgVAYCSEDCQ 254
                 6***************99998779*******7 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00015      0.46       3      31 ..       2      30 ..       1      32 [. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
        CbtB  3 ssasaqrllqlvaAllLGlllvylvgfsq 31
                ss++++++++++a+++LG l++y+v f+ 
  CDO71395.1  2 SSSRTSTIFTVAAVTVLGGLVAYAVYFDY 30
                5788999********************86 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   6.2e-05      0.18      11      28 ..     222     255 ..     215     259 .. 0.83
   2 ?   -2.7   1.1       2.3   6.9e+03      12      17 ..     515     520 ..     511     524 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.2e-05
                 CE-TTT................S-SEESSHHHHH CS
     zf-MYND  11 kkCagC................ksvfYCskeCqr 28 
                 ++C+ C                  v YCs++Cq 
  CDO71395.1 222 THCSYCfrpieegkavtpkhdeLGVAYCSEDCQL 255
                 4899999999999888888888899********6 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
                 E-TTTS CS
     zf-MYND  12 kCagCk 17 
                  C++C 
  CDO71395.1 515 ECERCL 520
                 688885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1745  (0.0973284); expected 358.6 (0.02)
Passed bias filter:                      968  (0.0539907); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 3621.12
//
Query:       CDO71396.1  [L=465]
Description: hypothetical protein BN946_scf184908.g154, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   61.2   0.0    2.6e-16   60.3   0.0    1.4  1  AAA       ATPase family associated with various cellular acti


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.4e-20   2.6e-16       7     127 ..     247     356 ..     242     359 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.4e-20
                 TTSSHHHHHHHHHHHHTHE.EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEE CS
         AAA   7 pGtGKTllakavakelgve.fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvi 104
                  G GKT+ +kav+k+++++ +  + +++++ ++ ge e++++e+f++a+++a p++l+++++dal+++             + +l++ldg++ +++ ++
  CDO71396.1 247 EGNGKTISMKAVMKDCDTRgYAPLYVKTFR-SWRGE-EASMAEVFTKARQMA-PCVLILEDLDALINDA----------NRSFFLNQLDGLEGNDG-IL 331
                 799*************85525666666666.66665.7789**********9.************9999..........6899**********866.** PP

                 EEEEESSGGGSTHHHH.S.TTSSEE CS
         AAA 105 vigatnrpdkldpall.r.gRfdrk 127
                 +ig tn+ d+ldpal  r +Rfdrk
  CDO71396.1 332 IIGSTNHFDRLDPALNnRpSRFDRK 356
                 ****************99*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3491.55
//
Query:       CDO71397.1  [L=491]
Description: Glycoside Hydrolase Family 79 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.089   10.9   4.6       0.11   10.6   4.6    1.1  1  Sporozoite_P67  Sporozoite P67 surface antigen
       0.18   11.4   0.4       0.34   10.4   0.4    1.4  1  PGPGW           Putative transmembrane protein (PGPGW)


Domain annotation for each model (and alignments):
>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.6   1.2e-05      0.11     260     307 ..     376     471 ..     279     478 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.2e-05
  Sporozoite_P67 260 e.............................................pgvGvpGvrvgaa...tssssttspssstttttpassgpsaqgshgsss 306
                                                                   pg G++ v +g++   + sss+++++ss++ + pass ps++ + g+s 
      CDO71397.1 376 AgektniawggktyagvgdatpvdatfssslpdktlscsggctiqiPGPGLAVVFLGQTfdfSNSSSSSNTTSSSSPSAPASSNPSNRSGSGASR 470
                     14555555556666666666666666666666666666666555556666666666654222455556666667777889999999999888874 PP

  Sporozoite_P67 307 r 307
                      
      CDO71397.1 471 F 471
                     3 PP

>> PGPGW  Putative transmembrane protein (PGPGW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   3.8e-05      0.34      18      32 ..     418     432 ..     411     434 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.8e-05
       PGPGW  18 liplPGPGwlvvflG 32 
                 +i +PGPG++vvflG
  CDO71397.1 418 TIQIPGPGLAVVFLG 432
                 7899**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3585.16
//
Query:       CDO71398.1  [L=606]
Description: hypothetical protein BN946_scf184908.g156 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-56  191.7   0.2    2.4e-55  188.1   0.2    2.3  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.2   1.3e-59   2.4e-55      84     444 ..     186     561 ..     156     571 .. 0.88

  Alignments for each domain:
  == domain 1  score: 188.1 bits;  conditional E-value: 1.3e-59
                 TSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH............. CS
        p450  84 gkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek............. 169
                 g+gv++a+ge w k R             s  el+++ ae  ++k+++++ ++  +d ++l+s+++ld+ ++ lFg+++ +l++               
  CDO71398.1 186 GTGVFNADGELWNKERI------------SHFELFDRHAETAINKIKERVRSNVAFDFQDLVSRFTLDSATEFLFGSCVHSLNSALpyphgmspfssea 272
                 55555555555555541............346789999******************************************999999************* PP

                 ....HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.......SCSSCSHHHHHHHHCTTCTCTSS CS
        p450 170 ....lselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa.......kksrrdfldalllakkekkgesk 257
                     ++++ +a+ +  +++ +++++l  + pl  +l t++ +++  +  +++ +l++ +++++e ++ +       ++++ ++ld+l++++  ++    
  CDO71398.1 273 ekspSERFAHAFGMAQRIV-SERPRLGWVWPLKEILKTSTDEHMAVVDAFIEPILQEALRKKEERVKHQndldekeSQDEETLLDHLVKQT--SDRA-I 367
                 ****999********9999.88**********************99999999999999999999999999999998778899999999996..5554.6 PP

                 SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.. CS
        p450 258 lsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.. 354
                 l+de  +      +   +  t+++l+++ y+L ++P v ++lr Ei e++g  r+pty+d+ +++yl+a+++EtLRl+p+vp+++ R   k+ ++++  
  CDO71398.1 368 LHDEGGRW--SRWIRRHTYRTAAALTFGVYLLSQHPAVLKRLRDEIIEHVGPTRRPTYEDIRDMKYLRAFLNETLRLYPPVPFNI-RFSIKEGTLPNpd 463
                 88887665..45566668889*************************************************************777.*****99999999 PP

                 .....EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGG CS
        p450 355 .....ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpp 444
                      + ip  t +  ++  +hrdp+++ p +eeFdp+RFld+++       ++f flPF aGpR+C+G+++A+ e++ fl++lLq F+    + t++p
  CDO71398.1 464 pqglpVYIPPKTAIAYSVFNMHRDPKFWgPTAEEFDPDRFLDDRVgkyLV-PNPFIFLPFNAGPRICLGQQFAYNEMSFFLIRLLQSFSSVSLDLTAQP 561
                 999*9****************************************88633.68***********************************86555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3898.69
//
Query:       CDO71399.1  [L=846]
Description: hypothetical protein BN946_scf184908.g157 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-108  361.2   0.0     5e-108  360.7   0.0    1.2  1  tRNA-synt_1c     tRNA synthetases class I (E and Q), catalyti
    2.5e-40  138.1   0.0    4.1e-40  137.4   0.0    1.3  1  tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA
    1.4e-29  103.2   0.0    3.8e-29  101.8   0.0    1.7  2  tRNA-synt_1c_C   tRNA synthetases class I (E and Q), anti-cod
    3.8e-05   24.5   0.8    3.8e-05   24.5   0.8    2.5  3  tRNA_synt_1c_R2  Glutaminyl-tRNA synthetase, non-specific RNA


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.7   0.0  1.1e-111    5e-108       2     313 ..     250     558 ..     249     559 .. 0.98

  Alignments for each domain:
  == domain 1  score: 360.7 bits;  conditional E-value: 1.1e-111
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   V+tRf+PeP+G+LHiGh+ka+++n+++A +++G+++lR++DT+pe e+  ++esile + wlg+++ +k+ty+sd+fd+l+++a+eLi++ k+Yvc+
    CDO71399.1 250 VHTRFPPEPNGFLHIGHSKAIFVNFGYAAYHHGHCYLRFDDTNPEAEEGRYFESILETVRWLGYEP-WKITYSSDYFDRLYELAVELIRRDKGYVCH 345
                   9*****************************************************************.****************************** PP

                   STHHHHHHHHCCSS...HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHH CS
  tRNA-synt_1c  99 ctkeeleeereeqe...klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfav 191
                   ct+ee+ ++r+ +e   ++++++r+r++ee+l+ f e+mk+g ++ ++a++R+k+d es  + ++Dlv++r+ ++p   h+++++k++iyPtYdf++
    CDO71399.1 346 CTAEEIFANRGGEErgpRKACVHRNRPVEESLAEF-EKMKNGFYQPGQAILRMKQDLESGnTMMWDLVAYRVLNSP---HHRTGTKWRIYPTYDFTH 438
                   **********9988889999***************.9********************9998***************...****************** PP

                   HHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHH CS
  tRNA-synt_1c 192 vidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftr 288
                   +++D+ e+ith+l+t+ef++++++y wl++al+++ +p + ey rlnl+++ +SKRk+ +lv+e +v++wdd+r+ +l +lrr+G++p ++ +++++
    CDO71399.1 439 CLCDSFENITHSLCTTEFIASRESYEWLCDALEVY-KPRQSEYGRLNLTGTIMSKRKILQLVKEGYVRDWDDPRLYTLIALRRRGVPPGAIISFVSS 534
                   ***********************************.9************************************************************ PP

                   HCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 289 eeliksfdlnresksleafdrkkLe 313
                    +++++   n++  ++e + r++Le
    CDO71399.1 535 LGVSTAA-SNIQAVRFEQAIRQYLE 558
                   ******9.99999999999999885 PP

>> tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.0   9.1e-44   4.1e-40       2     162 .]      12     165 ..      11     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 9.1e-44
  tRNA_synt_1c_R1   2 elielfksiGLsekkaketlknkklsaslkevieeagveekgldkkkgalLyslatklkkqalekrelivkyIvegklktslqvdaAlkYlskk 95 
                      elielfk+iGL+++ka+e++k++k +++l+++ie +++ +k++d+k++ lL +la++ +k  + +r++ v +I++g+lkt++qv++A kYl ++
       CDO71399.1  12 ELIELFKKIGLAQNKAAEAAKSPKSATTLRSIIEFHDLINKNVDEKQAVLLAALAVQGSKLGEAERSYAVYAILDGRLKTTDQVSEAAKYL-DS 104
                      89*****************************************************************************************.88 PP

  tRNA_synt_1c_R1  96 keeeideaefekacGVGvevtpeqieeaVekyieenkeeieekryrknlgkllaevkklpeLkWAdp 162
                      ++ ++dea+f+++cGVG+++tpe++ ++V++yi++++ +     + +nlg+ ++ +k  ++L+WA+p
       CDO71399.1 105 HPVPVDEADFNRSCGVGFSITPEELVNRVREYISSSSFTG----W-SNLGTAIGGLK-GTDLRWANP 165
                      889******************************9988876....8.***********.99*****97 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2     9e+03     158     172 ..     491     505 ..     481     505 .. 0.87
   2 !  101.8   0.0   8.4e-33   3.8e-29       2     156 ..     562     735 ..     561     741 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
  tRNA-synt_1c_C 158 kkgdivQfeRiGyfr 172
                     +k +i+Q+  +Gy+r
      CDO71399.1 491 SKRKILQLVKEGYVR 505
                     577899*******86 PP

  == domain 2  score: 101.8 bits;  conditional E-value: 8.4e-33
  tRNA-synt_1c_C   2 pRymaVldpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD........akrlkpgeevrLke..lynikveevekdesgevt 86 
                     pR+ +Vl+p+kvtienlpe+   +le plhpk pelg+ kvp++++iyi+++D        ++rl+pg+ v L +  + ++ v++ +  ++g+vt
      CDO71399.1 562 PRLLMVLRPLKVTIENLPEDFLLWLEKPLHPKAPELGSSKVPLTRTIYIDEDDfrledskdYFRLAPGKSVGLFQgpWPIAYVSHKVDPATGKVT 656
                     9************************************************************************99877777777666566***** PP

  tRNA-synt_1c_C  87 elkleydgesleearkkkgiihWvsa....eeavea.evrlYdrLfkeee.de...dfl..lnpdslkvleeglaepalan 156
                     e+ ++ ++e     +k+k++i+Wv++     ++v++ e r + +Lfk+e+ +    df   +npdsl++++ +++e  + +
      CDO71399.1 657 EIICRAENEGA--PKKPKAFIQWVAEhrpsGSPVVVdETRIFHQLFKSENpSVavpDFKadINPDSLEIVRGAMVEVGFWR 735
                     *******9655..579*********988765667778**********99966589766689**************987655 PP

>> tRNA_synt_1c_R2  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         4   1.8e+04      53      62 ..      30      39 ..      18      53 .. 0.43
   2 !   24.5   0.8   8.5e-09   3.8e-05      27      78 ..     183     233 ..     168     252 .. 0.65
   3 ?   -0.5   0.3      0.53   2.4e+03      19      46 ..     742     757 ..     735     792 .. 0.47

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
  tRNA_synt_1c_R2 53 esegaetiee 62
                      +++ ++ ++
       CDO71399.1 30 AAKSPKSATT 39
                     1122222222 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 8.5e-09
  tRNA_synt_1c_R2  27 kkkkkkkkkeekkkaakkakkekeeeesegaetieel..egellkfHkpgeNfk 78 
                      k+++k+k ke kk++++k ++++e    ++a++ +++  eg+l+++Hk+geN++
       CDO71399.1 183 KEAAKPKGKEPKKETTAKPAAQAE---PATASSSRSVfsEGFLGHLHKVGENPQ 233
                      344445555555554443333332...346677777779**************9 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.53
  tRNA_synt_1c_R2  19 aDnlkpkkkkkkkkkkkeekkkaakkak 46 
                      +D            +k e+kk ++++ k
       CDO71399.1 742 KD------------AKAESKKRTDAALK 757
                      11............11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5645.41
//
Query:       CDO71400.1  [L=390]
Description: hypothetical protein BN946_scf184908.g158 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-48  164.0   0.0    1.1e-35  123.3   0.0    2.0  2  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.18   12.7   1.0       0.58   11.1   1.0    1.9  1  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   1.2e-39   1.1e-35     113     361 ..      12     284 ..       1     285 [. 0.90
   2 !   39.6   0.1     3e-14   2.7e-10     388     434 ..     286     334 ..     276     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.2e-39
                 THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH..................HHHHHHHHHHHHHHHHCHHHHCCC CS
        p450 113 sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek..................lselvkaveelssllskssvqlll 193
                 s  el+++ a   ++k++++    + +d ++++s+++ld+ ++ lFg+++++led+                   ++++ +a +e  ++  +++++   
  CDO71400.1  12 SHFELFDRHAGLAIKKMKERLRGGHAVDFQDVVSRFTLDSATQFLFGKCVQSLEDPLpyayndpcapqltkaqtvAEQFAEALAEAQRVI-ATRPRAAR 109
                 6678999999999*******99999**********************************************9999889999999998777.8899**** PP

                 CCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.........SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 194 lfpllkylptkllrklkeavkklkdlldklieerretldsa.........kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstls 283
                 + pll  l +k    ++ +  +l+ ++d+ + ++r+   +           +++r++ld+l++ +   +++       l  ++ ++l+aG dTt++tl+
  CDO71400.1 110 VWPLLELLGDKSAGPMRVVDAFLQPIIDEAVAKNRAARAQVkngavgseeAEDHRTLLDHLVKIT---DDP-----VVLHDETVNILIAGKDTTAATLT 200
                 ***99999999999999888888888888888888887777899*****9889**********97...444.....456667889************** PP

                 HHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.......EEE-TT- CS
        p450 284 waLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.......ylipkGt 361
                 +a+y +  nP+v e+lr E+  ++g++r+pt+dd+ +++yl+avi+EtLRl+ +vp    R++ +d+++++       ++ipkGt
  CDO71400.1 201 FAIYMMCLNPHVFEQLRAEVLGTVGSQRSPTFDDIRNMKYLRAVINETLRLYAPVP-YNFRVANRDTTLPNsdprgpnVFIPKGT 284
                 ********************************************************.778*********9988888888999998 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 3e-14
                 GB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEE CS
        p450 388 Fldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFe 434
                 +lde+    + +++  f PF aGpR+C+G+++A+ e++ fl++l qnF+
  CDO71400.1 286 WLDERLgkYFAVNPSIFAPFNAGPRICLGQQFAYNEMSFFLIRLAQNFS 334
                 888888887789************************************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   6.5e-05      0.58      14      41 ..      87     114 ..      79     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.5e-05
      TPR_14  14 lGdpdeAiallrralalaPddaeawlll 41 
                 +++++eA+a ++r++a+ P  a++w ll
  CDO71400.1  87 AEQFAEALAEAQRVIATRPRAARVWPLL 114
                 789**********************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2798.26
//
Query:       CDO71401.1  [L=148]
Description: hypothetical protein BN946_scf184908.g159 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-34  117.0   0.0    7.3e-34  116.7   0.0    1.1  1  Bin3             Bicoid-interacting protein 3 (Bin3)
    9.2e-06   26.3   0.0    1.6e-05   25.5   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.3e-05   25.7   0.0    2.8e-05   24.7   0.0    1.5  2  Methyltransf_11  Methyltransferase domain
    1.9e-05   24.5   0.0    2.1e-05   24.4   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
      2e-05   24.5   0.0    2.5e-05   24.2   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    2.8e-05   24.8   0.0    4.5e-05   24.1   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.056   12.7   0.0      0.066   12.5   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Bin3  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   2.8e-37   7.3e-34       1      90 [.      43     131 ..      43     141 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 2.8e-37
        Bin3   1 ydvilalSvtkwihLnkgDeglkrlfkkiyellkpgGvlilEpqewksYkkkkklseelkenykelklrpedfeevLleevgfesveele 90 
                 ydv++a+Sv+kwihLn gDeg++r+f+k++++l+pgG+++lEpqew++Y+k+k+++ +lken k+l+lrp+dfe++L++ +gf    +l+
  CDO71401.1  43 YDVVIAFSVSKWIHLNEGDEGIRRFFRKVHNVLEPGGTFVLEPQEWDTYAKAKRMDPKLKENAKHLELRPDDFENILRD-IGFGPAINLG 131
                 9******************************************************************************.9998777766 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.3e-09   1.6e-05      34      97 .]      13      79 ..       8      79 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 6.3e-09
                     HHHHHHHHHHTTT.TEEEEESBC..CGBSSSTTTEEEEEEEST..GGGSS..HHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 34 leaareraeeegl.nvefvqgda..edlpfedgsfDlvvssga..lhhls..dedlekalkeiarvLkpgG 97
                      e a  ++    + nv+f+++d   +++p++++++D+v+++ +  + hl+  de ++++++++++vL+pgG
       CDO71401.1 13 HEGASDEF----PhNVTFRTADWvnTEIPENASKYDVVIAFSVskWIHLNegDEGIRRFFRKVHNVLEPGG 79
                     44444444....459********7777999999******95442333444225679**************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.1e-08   2.8e-05      36      96 .]      18      83 ..       8      83 .. 0.78
   2 ?   -2.8   0.0         4     1e+04      48      60 ..     101     113 ..      89     119 .. 0.49

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.1e-08
                     HHCCHHT-..EEEETTEECCCTSS-TT..-EEEEEEES-CCC-......CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11 36 ekaseegl..kvefvvadaeklpfedn..sfDlvvssevlhhv......edpekalkeiaRvLkpgGllvi 96
                     ++     +  +v+f+ ad  ++ +++n  ++D+v++++v  ++      e  ++++++++ vL+pgG++v+
       CDO71401.1 18 DE-----FphNVTFRTADWVNTEIPENasKYDVVIAFSVSKWIhlnegdEGIRRFFRKVHNVLEPGGTFVL 83
                     33.....234699*****998766665449*************77776669*****************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4
                      TTEECCCTSS-TT CS
  Methyltransf_11  48 vvadaeklpfedn 60 
                      ++++a++l ++ +
       CDO71401.1 101 LKENAKHLELRPD 113
                      4455555554444 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.1e-09   2.1e-05      48     119 ..      16      92 ..      10     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.1e-09
  Methyltransf_31  48 aqklgldnveFeqgdiee..leklledekfDlilsnevl..naladpdkile....eiervlkpggilliedprllaelp 119
                      a++ +  nv+F+ +d+ +  ++   + +k+D++++++v    +l++ d+ ++    ++++vl+pgg +++e    ++ ++
       CDO71401.1  16 ASDEFPHNVTFRTADWVNteIP--ENASKYDVVIAFSVSkwIHLNEGDEGIRrffrKVHNVLEPGGTFVLEPQE-WDTYA 92 
                      5667778*********883355..34599*******99999999999999999999*************76554.33333 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.9e-09   2.5e-05      56     160 ..      12     124 ..       8     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.9e-09
  Methyltransf_23  56 aveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp....d..ppellrqiatllkpgGylllseplaslkedrllldwlyl 136
                      ++e a+       ++++a  +     e++e++ k+d+++++ v  +++    d    + +r++++ l+pgG ++l+ +  + +++ + +d + l
       CDO71401.1  12 MHEGASdefphnvTFRTADWV---NTEIPENASKYDVVIAFSVSKWIHlnegDegIRRFFRKVHNVLEPGGTFVLEPQEWDTYAKAKRMD-PKL 101
                      556654444442222222222...337888999***************754435566***************999887444443333333.334 PP

  Methyltransf_23 137 vpagrhisffsarslkelleeaGl 160
                       ++ +h+ +   ++++++l++ G+
       CDO71401.1 102 KENAKHLELRP-DDFENILRDIGF 124
                      55559999998.***********9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.8e-08   4.5e-05      48      99 .]      26      81 ..      10      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.8e-08
  Methyltransf_12 48 nnnvelealdlldldgg...ssfDlvvasnvlhhl......kdirevldnirklLkpgGrl 99
                     +   ++ ++++     +   s++D+v+a++v  ++      + ir+++++++++L pgG +
       CDO71401.1 26 FRTADWVNTEI-----PenaSKYDVVIAFSVSKWIhlnegdEGIRRFFRKVHNVLEPGGTF 81
                     33334444444.....23446**************************************75 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.6e-05     0.066     108     165 ..      18      84 ..      11     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
                 S-SSS-EEEEES-GGG..---...--SEEEEES-GGGT....SGGGHHHHHHHHHHHS-TT-EEEEE CS
        CMAS 108 ldlerkvevklldyed..lde...kvdrvvsvgafehv....gkenydtffkklkkllkedGllllh 165
                  ++ ++v+ + +d+ +  ++e   k+d v+++ +   +    g e   +ff+k++++l+++G+++l+
  CDO71401.1  18 DEFPHNVTFRTADWVNteIPEnasKYDVVIAFSVSKWIhlneGDEGIRRFFRKVHNVLEPGGTFVLE 84 
                 56788999999999761155578899*999777766655599999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1065.73
//
Query:       CDO71402.1  [L=188]
Description: hypothetical protein BN946_scf184908.g160 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-14   54.3   0.0    3.6e-12   46.7   0.0    2.2  2  HAD_2           Haloacid dehalogenase-like hydrolase
    1.6e-08   35.1   0.0    2.4e-07   31.3   0.0    2.1  2  Hydrolase       haloacid dehalogenase-like hydrolase
    1.8e-08   34.3   0.0    5.4e-08   32.8   0.0    1.8  2  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0025        15       5      27 ..       1      23 [.       1      57 [. 0.73
   2 !   46.7   0.0   6.1e-16   3.6e-12      98     177 ..      69     147 ..      62     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0025
       HAD_2  5 lDgTlldteeliiqafnelleey 27
                +DgTl+d+++ ++ a++  + +y
  CDO71402.1  1 MDGTLVDSTDGVVGAWELFAYKY 23
                7*************998877666 PP

  == domain 2  score: 46.7 bits;  conditional E-value: 6.1e-16
       HAD_2  98 lgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                  +i Ts +++ ++  l++ g+  + dv v+sedvek KP+p++++   ++ +++++++++v+D p ++ ++k+ag+k++a
  CDO71402.1  69 WAICTSATSSYATAALQAAGV-PVPDVFVVSEDVEKGKPEPDPYLLGAKRCGVDPSRCLVVEDAPAGVRSGKAAGCKTLA 147
                 6999*************9997.789****************************************************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.04   2.4e+02       8      26 ..       1      19 [.       1      44 [. 0.84
   2 !   31.3   0.0   3.9e-11   2.4e-07     136     210 .]      68     142 ..      61     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.04
                SBTTTBCHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
   Hydrolase  8 kdGTLttgepsvedvivsa 26
                +dGTL++++  v+ +++  
  CDO71402.1  1 MDGTLVDSTDGVVGAWELF 19
                7********9999999877 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 3.9e-11
                 EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 136 evvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +++++t+  ++ a +a++ +G    d+ + s++++ +kp+p+ ++  +++++++p+++++V+D + ++  ++aAg
  CDO71402.1  68 RWAICTSATSSYATAALQAAGVPVPDVFVVSEDVEKGKPEPDPYLLGAKRCGVDPSRCLVVEDAPAGVRSGKAAG 142
                 5899**********99999**555588888888889**************************************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.47   2.8e+03      12      30 ..      82     100 ..      75     103 .. 0.76
   2 !   32.8   0.0   9.1e-12   5.4e-08       3      73 ..     104     170 ..     102     172 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.47
                     HHHHHH---GGGEEEEES- CS
  Hydrolase_like  12 falevlgsdpeevlmiGDr 30 
                     +al++ g++  +v+++  +
      CDO71402.1  82 AALQAAGVPVPDVFVVSED 100
                     6788889999999988755 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 9.1e-12
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     gKPep  y   ++++g+dp+++l++ D   + ++++++aG+k+++  t  tr++ +   e++p+yv+ +l 
      CDO71402.1 104 GKPEPDPYLLGAKRCGVDPSRCLVVEDA-PAGVRSGKAAGCKTLALITSHTREQIA---EAQPDYVVSNLS 170
                     9***************************.99***************9999998664...589*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1245.74
//
Query:       CDO71403.1  [L=780]
Description: hypothetical protein BN946_scf184908.g161 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-92  309.0   0.1      8e-92  308.0   0.1    1.5  1  Sec15         Exocyst complex subunit Sec15-like
    3.1e-07   30.4   3.1    3.5e-07   30.2   0.2    2.7  3  Vps51         Vps51/Vps67
      2e-06   28.0   0.4      2e-06   28.0   0.4    3.3  4  COG5          Golgi transport complex subunit 5
    3.1e-05   23.9   0.3    3.1e-05   23.9   0.3    3.2  3  Sec8_exocyst  Sec8 exocyst complex component specific domain
     0.0029   17.7   3.9      0.013   15.6   0.7    3.0  3  COG2          COG (conserved oligomeric Golgi) complex compon
     0.0098   14.5   1.7      0.038   12.6   0.3    2.1  2  Zw10          Centromere/kinetochore Zw10
  ------ inclusion threshold ------
      0.078   11.6   3.4       0.81    8.3   0.1    2.6  2  Dor1          Dor1-like family
       0.76   10.8   5.0        4.9    8.2   0.2    3.5  4  RAC_head      Ribosome-associated complex head domain
        1.2    8.6   4.1        1.1    8.7   0.8    2.3  2  FAP206        Domain of unknown function


Domain annotation for each model (and alignments):
>> Sec15  Exocyst complex subunit Sec15-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.0   0.1     4e-95     8e-92       3     316 .]     449     745 ..     448     745 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.0 bits;  conditional E-value: 4e-95
                 HHHHHT------------.---------------SSHHHHHHHHHHHHHHHT---SSS-STTTTTHHHHHHHS-SSTGGGHHHHHHH--.-STTTTTTT CS
       Sec15   3 kvlkvcwlkeseleeaee.kesefpvtlPFSqlyplcCidirkfieklykFledlyqhereiddilrksldeLLirvvseklrsklkstlnleqiaQil 100
                  vl+++wl+ +   +++e ++s+ p++lP+Sq ++lcC+dir+f++++y+F+e+++qh+r+idd+l+ksld++L++ +s+++ ++ +st nl+q+aQi+
  CDO71403.1 449 DVLETVWLTRE---QRNElQQSAAPLNLPWSQGFYLCCQDIRSFVHNFYQFIEGVSQHHRNIDDLLSKSLDTILTNYISDSIAKRAQSTDNLSQLAQII 544
                 799*******8...555558999**************************************************************************** PP

                 HHHHTTTHHHHHHTTS---S.......TTT--TT----THHHHHHHHHHHHHHHHHHHHHHHHT----------------------HHHHHHHHHHHII CS
       Sec15 101 iNleyfetackelekllaqerssqrggnieqnsaeeiklkaskkfkearkaAekkifelvdsKiddflelaeydWtpteaesepseylkdliqfLetif 199
                 +Nle+fe+ac+ele+ l++ rssqrgg        +i+lka ++f+++r++A  +++e+v +K+ d+ +l+eydWtp+ +e  ps+yl +l+++L+t++
  CDO71403.1 545 TNLEHFEIACSELERSLTNIRSSQRGG--------TIRLKAAASFAATRNKALARVTEAVSAKLVDYPGLSEYDWTPKSREGAPSMYLYELVNWLTTVI 635
                 **************************9........8*************************************************************** PP

                 IIIITTS-SSTTTTHHHHTTTHHHHHHHHHTTS---S--SSSHHHHHHTTTSSGGG-----------------------TTTT.TTT--S.SHHHHHHH CS
       Sec15 200 ssvlvnLpesvkelvyfraldhiaeslldlllseevkrineeavenlelDvkylesfakslsvskkeeslestfaelrqlidLllsdnveeYldpsire 298
                 +s  + L+e +ke++y++a+ ++a+++ld+l++++++++ne+a++nl +Dv++l + +k+ ++s      +++f+elr + ++++sd v++Yl  sir+
  CDO71403.1 636 DS--LALKEAYKEEAYRGAVGYLASCFLDFLTGRDIPMMNENAIANLLMDVDFLDEELKRSGHS-----HSAAFTELRSTASVVMSDAVNAYLIASIRQ 727
                 **..569****************************************************99976.....589*************************** PP

                 HSS-SS-TTTTTTTTTHH CS
       Sec15 299 rkYsrvkpekaaklleKl 316
                  +Y++v+p+++++lleKl
  CDO71403.1 728 TSYPAVRPKRLQALLEKL 745
                 *****************7 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.2   1.7e-10   3.5e-07      27      84 ..      52     109 ..      41     112 .. 0.93
   2 ?   -3.9   0.0       7.4   1.5e+04      53      70 ..     120     137 ..     114     143 .. 0.47
   3 ?   -2.5   0.1       2.8   5.6e+03      48      74 ..     535     561 ..     525     568 .. 0.54

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.7e-10
       Vps51  27 veasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaiski 84 
                 + ++l+  i  +d+e+ ++++dnY+++is  +t+ ++ks +++l++k+ +l++++s++
  CDO71403.1  52 YLRTLQGLIDSKDAEIESICGDNYQEFISSVSTLFSIKSYTTNLREKITTLDSSVSQV 109
                 667999************************************************9987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.4
       Vps51  53 LisasdtIrkmksemdkl 70 
                 L+++ +t  ++ + +d l
  CDO71403.1 120 LLQTKKTAGNLDEAIDGL 137
                 344444444443333333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.8
       Vps51  48 dnYskLisasdtIrkmksemdkldqkl 74 
                 dn s+L ++   +++++  +++l+ +l
  CDO71403.1 535 DNLSQLAQIITNLEHFEIACSELERSL 561
                 344444444444455555555555555 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1         1   2.1e+03      40      78 ..      19      57 ..      10      62 .. 0.59
   2 !   28.0   0.4     1e-09     2e-06      32     131 ..      50     149 ..      39     150 .. 0.93
   3 ?   -1.8   0.0       1.6   3.2e+03      31      59 ..     201     229 ..     194     250 .. 0.74
   4 ?   -0.4   0.2      0.62   1.2e+03      51      87 ..     531     567 ..     499     596 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5 40 ydiqeldkrlrqlitsnhleLlehlskskslssvlselk 78
                + i+ ld+   ++  ++  ++++++  +++ +++l +l+
  CDO71403.1 19 QQIHLLDQASSSENLEQLGPIIKQIHANRQQEAYLRTLQ 57
                455555555555555666666666666666666666665 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1e-09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  32 stplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtldLlrralrflhlsk 130
                 ++ l +l+  i+  d ++++++ +n++e ++ +s+  s +s++++l++++  L +s++++ + ++e+ + + + ++++ +l ++ d l + lr+l +++
  CDO71403.1  50 EAYLRTLQGLIDSKDAEIESICGDNYQEFISSVSTLFSIKSYTTNLREKITTLDSSVSQVGKSLVEKKKALLQTKKTAGNLDEAIDGLQACLRVLDVVN 148
                 56677888889999*********************************************************************************9998 PP

                 H CS
        COG5 131 q 131
                 +
  CDO71403.1 149 R 149
                 7 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  31 lstplkrlnydiqeldkrlrqlitsnhle 59 
                 + +++k+   di+++  ++ ql  +  + 
  CDO71403.1 201 VTASMKQWLLDIRNVSAQIGQLALDAMDL 229
                 56778999999999999999988776555 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.62
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  51 qlitsnhleLlehlskskslssvlselksslesLsas 87 
                  + t+n ++L + +++ ++ +   sel+ sl ++ +s
  CDO71403.1 531 AQSTDNLSQLAQIITNLEHFEIACSELERSLTNIRSS 567
                 3455666666666666666666667777776666665 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   1.5e-08   3.1e-05      46     139 ..      57     150 ..      48     153 .. 0.91
   2 ?   -0.1   0.3       0.4     8e+02      56     114 ..     486     542 ..     482     559 .. 0.59
   3 ?   -1.1   0.0      0.78   1.5e+03      21      63 ..     677     720 ..     668     722 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
  Sec8_exocyst  46 kqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKesleeakkklstkkkeLkelnarsakykevieiLdaieelkkvpdki 139
                   + l +  +++++++  +++q F ss+++  +i s+ ++ +ek++ l  s+++  k+l +kkk L +++++  +++e i+ L+a   +  v +++
    CDO71403.1  57 QGLIDSKDAEIESICGDNYQEFISSVSTLFSIKSYTTNLREKITTLDSSVSQVGKSLVEKKKALLQTKKTAGNLDEAIDGLQACLRVLDVVNRV 150
                   55566667789999*********************************************************************99999998887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.4
  Sec8_exocyst  56 LqevvnehhqaFnssiasYs.kilssiqesqekvselKesleeakkklstkkkeLkelna 114
                   +++ v++++q F ++++ ++ +i + +++s +++  l + ++++ +k  +  ++L++l++
    CDO71403.1 486 IRSFVHNFYQ-FIEGVSQHHrNIDDLLSKSLDTI--LTNYISDSIAKRAQSTDNLSQLAQ 542
                   5666777776.55555544414556666666665..445566666666666666666655 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.78
  Sec8_exocyst  21 anpvelalsllDds...svGlahrlkefkqlkkqieeaLqevvneh 63 
                   +  + + + +lD++   s G +h    f +l +  + ++ ++vn++
    CDO71403.1 677 IANLLMDVDFLDEElkrS-GHSHS-AAFTELRSTASVVMSDAVNAY 720
                   556667788888863324.76665.789999999999999999987 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.7   6.3e-06     0.013      35     131 ..      56     152 ..      25     154 .. 0.90
   2 ?   -3.3   0.0       4.6   9.2e+03      97     108 ..     365     376 ..     348     406 .. 0.55
   3 ?    1.6   0.0      0.14   2.8e+02      16      82 ..     494     565 ..     481     597 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.3e-06
        COG2  35 LeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekrellklllkldevveklea 131
                 L+    + ++e+ ++  ++y++F+s  + L ++++   +++ +++++ + v++v ++l e+++++ +  + a +l e+   l++ l++ +vv+++ +
  CDO71403.1  56 LQGLIDSKDAEIESICGDNYQEFISSVSTLFSIKSYTTNLREKITTLDSSVSQVGKSLVEKKKALLQTKKTAGNLDEAIDGLQACLRVLDVVNRVGE 152
                 5555556678999999*********9999**********************************************************9999999866 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.6
        COG2  97 eeveskleeake 108
                 ++ve+ l++ k+
  CDO71403.1 365 KAVEDVLKNEKD 376
                 333333333332 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.14
        COG2  16 dqFvse.lrhgvpLesl.rrdLeaylk.llekellelvn..edyadFvslSghLvglqeeleevesplaaar 82 
                  qF++   +h+ ++++l ++ L+++l+ ++++++++     +++    ++ ++L  ++ + +e+e +l+++r
  CDO71403.1 494 YQFIEGvSQHHRNIDDLlSKSLDTILTnYISDSIAKRAQstDNLSQLAQIITNLEHFEIACSELERSLTNIR 565
                 578888888888888852567777654256777776554224566666666777777777777776666666 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.3   1.9e-05     0.038      28     185 ..      65     216 ..      49     289 .. 0.83
   2 ?    0.8   0.1     0.072   1.4e+02      51     120 ..     496     563 ..     485     593 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
        Zw10  28 eevskmivkkYseflelsssaeellerveslskeidalkkkveneieqdlkaaveelaelkqqlkekevvlellealkkieealeelkealknkaflva 126
                 +e+ +   ++Y+ef+ + s+   + + + +l + i  l + v++  +  l +  + l + k+ + + ++ ++ l+a   +   ++ + e +k++++  a
  CDO71403.1  65 AEIESICGDNYQEFISSVSTLFSIKSYTTNLREKITTLDSSVSQVGK-SLVEKKKALLQTKKTAGNLDEAIDGLQACLRVLDVVNRVGEMVKEGKYWSA 162
                 688888899*********************************97655.5666778888999999*********************************** PP

        Zw10 127 adlleelkslldlekvekafqlkilkalrkelsvlsenlqykLgeewdrlvvwklpssk 185
                    le+++s     +   ++  ++++++ + l  l+ ++ +   + +++ ++ ++ +++
  CDO71403.1 163 LRSLEDIES----MPPTSLSTTPLFQHVLSSLPSLRGQIKDAVTASMKQWLL-DIRNVS 216
                 ******998....444446668889998888888888888888888887765.666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.072
        Zw10  51 llerveslskeidalkkkveneieqdlkaaveelaelkqqlkekevvlellealkkieealeelkealkn 120
                 ++e v++  ++id+l++k  + i+ +    ++ +a+  q   + +++ +++ +l+ +e a  el+++l+n
  CDO71403.1 496 FIEGVSQHHRNIDDLLSKSLDTILTNY--ISDSIAKRAQSTDNLSQLAQIITNLEHFEIACSELERSLTN 563
                 666777777888888777666666543..45666666666666677777777777777777777777766 PP

>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00041      0.81      27     168 ..      64     206 ..      47     215 .. 0.86
   2 ?    3.2   0.5     0.015        29      28      93 ..     505     571 ..     491     584 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00041
        Dor1  27 laqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisekrkenkllldkheqllellelPqlmdrcirngyydea 125
                 +a+i  +  +ny+ +i + + l +i +   ++r+++ +L +++ +  ++ ++ +k++ +      +   + d  +  l +l++ ++  + +++g+y +a
  CDO71403.1  64 DAEIESICGDNYQEFISSVSTLFSIKSYTTNLREKITTLDSSVSQVGKSLVEKKKALLQTKKTAGNLDEAIDGLQACLRVLDVVNRVGEMVKEGKYWSA 162
                 778888999*******************************************999999998887777777788889999***************88888 PP

        Dor1 126 l.eLeayvsrLkqristnpviqsiaaeveetvqelleqLiqkLr 168
                 l  Le   s   +  st p+ q + +++  ++ ++ + ++++++
  CDO71403.1 163 LrSLEDIESMPPTSLSTTPLFQHVLSSLPSLRGQIKDAVTASMK 206
                 73588888888888888888888888888877777777777776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.015
        Dor1  28 aqiqdLarknyktlida..aealeairqelediraqledLvlklpkLteectrfskkaeeisekrken 93 
                 ++i dL  k+  t++++   + + +  q+ ++   ql++++ +l+ ++ +c +   ++++i ++++  
  CDO71403.1 505 RNIDDLLSKSLDTILTNyiSDSIAKRAQSTDN-LSQLAQIITNLEHFEIACSELERSLTNIRSSQRGG 571
                 56677777777777765323333444444444.789999**********************9998755 PP

>> RAC_head  Ribosome-associated complex head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0025       4.9      37      92 ..      12      66 ..       6      70 .. 0.88
   2 ?   -3.7   0.1         9   1.8e+04      63      85 ..      97     120 ..      92     128 .. 0.43
   3 ?   -1.1   0.1       1.9   3.8e+03      17      60 ..     485     529 ..     484     542 .. 0.73
   4 ?    2.7   0.0      0.12   2.5e+02      26      81 ..     521     577 ..     513     591 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
                HHHHHHHHHHHHHHHH--HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTSS- CS
    RAC_head 37 kvidkvLedvdllieklddeeLaelaekleaakdaeevkavfkeevkelveagklk 92
                + id++L+++ ll +  + e+L++l   +++   a+  ++++ + ++ l++++ ++
  CDO71403.1 12 ESIDQQLQQIHLLDQASSSENLEQLGPIIKQI-HANRQQEAYLRTLQGLIDSKDAE 66
                679***********************999998.89999999999999999988776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9
                 HHHTT--.-HHHHHHHHHHHHHHH CS
    RAC_head  63 ekleaak.daeevkavfkeevkel 85 
                 ek++  + ++++v + + e+ k+l
  CDO71403.1  97 EKITTLDsSVSQVGKSLVEKKKAL 120
                 444444223333433334443433 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.9
                 HHHHHHHHTGGGSSSS--.HHHHHHHHH.HHHHHHHH--HHHHHH CS
    RAC_head  17 alrgavkdanYFadgeaekakvidkvLe.dvdllieklddeeLae 60 
                  +r+ v ++  F +g +++ ++id+ L+  +d ++++   +++a+
  CDO71403.1 485 DIRSFVHNFYQFIEGVSQHHRNIDDLLSkSLDTILTNYISDSIAK 529
                 688999999999999999899999887425777777666666555 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.12
                 GGGSSSS--.HHHHHHHHHHHHHHHHH--HHHHH..HHHHHHTT---HHHHHHHHHHH CS
    RAC_head  26 nYFadgeaekakvidkvLedvdllieklddeeLa..elaekleaakdaeevkavfkee 81 
                 nY +d+ a++a+  d  L+++ ++i++l++ e+a  el+ +l++ ++++   ++  ++
  CDO71403.1 521 NYISDSIAKRAQSTD-NLSQLAQIITNLEHFEIAcsELERSLTNIRSSQRGGTIRLKA 577
                 888888888888866.8************99986337888888877766665555555 PP

>> FAP206  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8   0.00055       1.1      18      82 ..      11      71 ..       7     133 .. 0.82
   2 ?   -0.1   0.1      0.27   5.5e+02      19      76 ..     506     566 ..     487     580 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00055
      FAP206 18 eeaqelasrytalleklveeseaevaeeqlerlkqalinvrqyeaylrilledveksaeeveell 82
                +e++++  ++  ll+++    +++++ eql  + +++   rq+eaylr+l+  +++   e+e+ +
  CDO71403.1 11 QESIDQQLQQIHLLDQA----SSSENLEQLGPIIKQIHANRQQEAYLRTLQGLIDSKDAEIESIC 71
                55555555666666666....8899999999999999999************9999999998765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.27
      FAP206  19 eaqelasr.ytallekl..veeseaevaeeqlerlkqalinvrqyeaylrilledveksae 76 
                 ++ +l s+   ++l ++  ++  ++ ++  +l++l q ++n+  +e+    l++++ ++++
  CDO71403.1 506 NIDDLLSKsLDTILTNYisDSIAKRAQSTDNLSQLAQIITNLEHFEIACSELERSLTNIRS 566
                 4444444433333333346667888889999999999999999998888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5245.75
//
Query:       CDO71404.1  [L=181]
Description: hypothetical protein BN946_scf184908.g162 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-79  265.7   0.1    1.5e-79  265.5   0.1    1.0  1  Arf        ADP-ribosylation factor family
    1.9e-14   53.9   0.0    2.6e-14   53.5   0.0    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    4.2e-14   52.4   0.0    5.2e-14   52.1   0.0    1.0  1  SRPRB      Signal recognition particle receptor beta subunit
      4e-13   49.2   1.3    2.7e-09   36.7   0.2    2.2  2  G-alpha    G-protein alpha subunit
    1.1e-12   47.9   0.0    1.1e-12   47.8   0.0    1.1  1  Ras        Ras family
    1.4e-10   41.0   0.0    1.7e-10   40.7   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    1.9e-06   27.9   0.0    2.9e-06   27.4   0.0    1.3  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0068   15.7   0.7       0.02   14.2   0.7    1.8  1  6PF2K      6-phosphofructo-2-kinase


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.5   0.1   6.5e-83   1.5e-79       2     175 .]       6     177 ..       5     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 265.5 bits;  conditional E-value: 6.5e-83
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHH CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleea 100
                 +++l+ l++ kke+ril++GLD+aGKtTil+klkl+e+vtt+PTigfnve++e+kn++ftvwDvGGq+k+RplW++Yf++t+++ifvvDs+dreR++ea
  CDO71404.1   6 SKLLSGLFG-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEA 103
                 678899999.***************************************************************************************** PP

                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlsesi 175
                 +eeL+++l+e+el+++ llv+aNKqDlp+a++++e++++lgl+ l+ +r+++iq+++a++g+gl+eglewls +i
  CDO71404.1 104 REELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHGLR-QRTWYIQAACATSGDGLYEGLEWLSANI 177
                 **********************************************.************************9875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.2e-17   2.6e-14       1     119 [.      19     129 ..      19     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.2e-17
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 ++++vG  ++GKt++l ++  +++  ++ +tig ++ t e+            k++++ +WD++Gq+++r l ++y+++ + +i+v+ds++ e+++e  
  CDO71404.1  19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------------KNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAR 104
                 699*******************996.568*****9966443............5799*******************************88888777777 PP

                 HHHHHHCSSS....-.EEEEEE-TT CS
         Roc 100 kelkkvagks....p.vilvgnkiD 119
                 +el+++ +++      +++ +nk D
  CDO71404.1 105 EELQRMLNEDelrdAlLLVFANKQD 129
                 7776665544122131456679988 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.3e-17   5.2e-14       2     137 ..      16     143 ..      15     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 2.3e-17
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 ++ ++l+vGl  +GKT+++ +L  +++ +t   +  +  + ++   k+ ++t+ D+ G++k+r     +  + ++ +g++fvvDS  d  ++ e  E l
  CDO71404.1  16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIgFNVETVEY---KNISFTVWDVGGQDKIRPL-WRH--YFQNTQGIIFVVDSN-DRERISEAREEL 107
                 5678******************************888999999...*****************75.555..57889********97.7889******** PP

                 HHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 100 yeilliteklkdavdiliACnKqelflakspklikdaL 137
                   +l + e l+da+ +l+  nKq+l  a ++  i d+L
  CDO71404.1 108 QRMLNEDE-LRDAL-LLVFANKQDLPNAMNAAEITDKL 143
                 ****9999.66766.67777************999987 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1     5e-05      0.11      21      45 ..      15      39 ..       9      44 .. 0.90
   2 !   36.7   0.2   1.2e-12   2.7e-09     185     281 ..      45     130 ..      40     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
                ..EEEEEEEESTTSSHHHHHHHHHH CS
     G-alpha 21 krevkllllGqseSGKsTilkqlkl 45
                k+e+++l++G +  GK+Til +lkl
  CDO71404.1 15 KKEMRILMVGLDAAGKTTILYKLKL 39
                469*****************99985 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.2e-12
                 -----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHH CS
     G-alpha 185 rlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDi 281
                  ++t+G++  ++e++ +++f+++dvgGq + r+ W ++f++++ iiF+v           ++   r+ e+ +  + ++n+ +l+++ +++f nK D+
  CDO71404.1  45 TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVD----------SNDRERISEAREELQRMLNEDELRDALLLVFANKQDL 130
                 478999999999999.********************************97..........4445788888899999999999999999999999886 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0     5e-16   1.1e-12       2     119 ..      20     136 ..      19     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5e-16
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 +++vG  a GKt++l++   ++  ++ ++Tig++    +  v+ k++++++wD  Gq++ + l + y+++++gi+ v d ++re  +++++ ++ + + 
  CDO71404.1  20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAREELQRMLNE 113
                 899*******************9976.9***87654..4..45679*********************************99999999998666666555 PP

                 ST.TTSEEEEEEETTTGGG...G CS
         Ras 101 ae.envpivLvGnKvDlee...k 119
                  e ++  +++ +nK Dl +    
  CDO71404.1 114 DElRDALLLVFANKQDLPNamnA 136
                 55678999999******984443 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   7.6e-14   1.7e-10       1     134 [.      19     141 ..      19     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 7.6e-14
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 ++L++G   +GKt++      ++   ++++   ti  + ++v  ++n+ + +wD+gGq+++          + f+n + +i+V+D+++re ++e+ e+l
  CDO71404.1  19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETV-EYKNISFTVWDVGGQDKIRPLW-----RHYFQNTQGIIFVVDSNDRErISEAREEL 107
                 589**********85....5678889999999**********.599*************987664.....899**************998799999999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeife 134
                 +++l++  +  ++a + v+ +K Dl + ++ +ei +
  CDO71404.1 108 QRMLNE--DELRDALLLVFANKQDLPNAMNAAEITD 141
                 999985..66799999********998888877765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.3e-09   2.9e-06       1     111 [.      19     123 ..      19     127 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.3e-09
                 EEEEEESTTSSHHHHHHHH.HTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinal.tgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas.eeklkpldee 96 
                 +++ vG   +GK+t++ +l +g   iv+ +p  T+  n ++v++k+ +++++D+ G  +    +   l +++ +  +++ i++vvd++ +e +++ +ee
  CDO71404.1  19 RILMVGLDAAGKTTILYKLkLG--EIVTTIP--TIGFNVETVEYKNISFTVWDVGG-QD----KIrPLWRHYFQ--NTQGIIFVVDSNdRERISEAREE 106
                 5889***************444..5787787..77777777777799*********.43....22357777775..578*******7776689999999 PP

                 HHHHHHH..TTSEEEEE CS
    MMR_HSR1  97 leellee..akkplilv 111
                 l+++l+e   ++ l+lv
  CDO71404.1 107 LQRMLNEdeLRDALLLV 123
                 99999886422333333 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.7   8.8e-06      0.02      11      51 ..      15      55 ..       7     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.8e-06
                .S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHH CS
       6PF2K 11 nsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgk 51
                ++++ i++vGL a gKt+i  kl      ++++t  Fnv  
  CDO71404.1 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET 55
                56788****************99877778888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1267.03
//
Query:       CDO71405.1  [L=696]
Description: hypothetical protein BN946_scf184908.g163 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-22   78.8   8.2      3e-19   69.9   0.0    4.1  3  CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
    4.9e-12   46.1   0.0    6.4e-11   42.5   0.0    2.3  2  Beta-Casp  Beta-Casp domain
    1.7e-06   27.9   0.0    4.1e-06   26.6   0.0    1.7  1  RMMBL      Zn-dependent metallo-hydrolase RNA specificity dom


Domain annotation for each model (and alignments):
>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.1     0.013        79      43      86 ..     161     210 ..     124     232 .. 0.45
   2 ?    0.5   0.1       0.1     6e+02      33      52 ..     327     346 ..     302     366 .. 0.52
   3 !   69.9   0.0     5e-23     3e-19       1     161 [.     441     584 ..     441     585 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.013
   CPSF100_C  43 eeeeeeeeeeeeeeeaskkqkl......aeksekeaseeeseekkeslpt 86 
                 +e+ ++e+e++++ ++ ++q++      +++s++++++++++e++e+ +t
  CDO71405.1 161 KERAAKEKEAAQQAAMARTQRMleadegQSESDSDSDSDSDDEENEVERT 210
                 11222222222222222222223333333333333333444444444333 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
   CPSF100_C  33 eaeeaeeeekeeeeeeeeee 52 
                 +++e+ +e+  ++eeee+++
  CDO71405.1 327 AENEEVKEARRRKEEEETKK 346
                 11111111111111111111 PP

  == domain 3  score: 69.9 bits;  conditional E-value: 5e-23
   CPSF100_C   1 VkLsdsLvksLkwqkveglevatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekkeslptldvlpankasvrs 99 
                 + Lsd+L++s+k++++e+ ev++v g++             ++++    e ++++  +    k+            ++++  + ++l   p+++     
  CDO71405.1 441 ISLSDELLASIKMSRFEDNEVGYVAGRISS----------LATSTIPVLEPASSSALQ---VKT------------ASAQPVRPRMLGSRPKRA----- 509
                 67**************************91..........111111111111111111...111............122222223444444444..... PP

   CPSF100_C 100 aaqplfvGdlrLadLkkallssgikAEFrgeGtLvid.............gaVaVrKsakGrieiegvvletfye 161
                   q+  +G+l+L+ Lk +l++ gi AE+ geG+Lv++             ++VaVrK+++Gr+e+eg+v++ +y+
  CDO71405.1 510 LPQSTMIGELKLTVLKARLAQVGILAELVGEGVLVCGaaarrgasagtleDSVAVRKTGRGRVELEGSVSDIYYR 584
                 55***********************************************77*******************99995 PP

>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.1e-14   6.4e-11      60     109 ..      58     110 ..      13     111 .. 0.82
   2 ?    0.8   0.0     0.095   5.7e+02      20      44 ..     265     327 ..     252     405 .. 0.69

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.1e-14
                 H...HS-SSEEEEES-TTSSSSHHHHHHHHHTTSTTSEEEESS---TTSHHHH CS
   Beta-Casp  60 n...sskgpkvilassgmlegGrsrellkklledprntvilvgyqaegTlgrk 109
                     s+k+pk+ila +  l++G+sr l+++++e p+n+v+l+g++++gTlgr 
  CDO71405.1  58 MqtySTKDPKLILAVPATLSHGPSRSLFAQFAEIPDNVVLLTGRSEPGTLGRI 110
                 0444689********************************************95 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.095
                 -S-EEEEE-HHHHHHHHHGGGGGG.......................................E CS
   Beta-Casp  20 lklpiyldsplaskatevYkeyae.......................................v 44 
                 +++ iyl +++a kat+++k+                                           
  CDO71405.1 265 ISFDIYLKGNVA-KATSFFKSADGqtqrfrmfpyvekrrkvdeygetldvgmwlrkgrvleedA 327
                 457899999665.677787777667777777777777777777766666666666666665442 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   6.8e-10   4.1e-06       2      60 ..     362     422 ..     361     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.8e-10
       RMMBL   2 ipvkarieeidfSgHadknellelirklkprnvilvHGeeeatsalarllk..eeegidvf 60 
                 + + +r  ++d++g  d +  + ++++++pr+ il+H  +eat+al + ++  + + ++++
  CDO71405.1 362 VQLACRLFFVDLEGLNDGRAVKTIVPQVNPRKMILIHAPQEATDALIESCAniRAMTKEIY 422
                 6789******************************************999963344445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 4563.76
//
Query:       CDO71406.1  [L=1122]
Description: hypothetical protein BN946_scf184908.g164 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 7862.82
//
Query:       CDO71407.1  [L=301]
Description: hypothetical protein BN946_scf184908.g165 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    8.3   4.8        1.5    8.2   3.3    1.7  2  CAP_N     Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0     0.094   1.7e+03     193     210 ..      40      57 ..      37      60 .. 0.89
   2 ?    8.2   3.3   8.3e-05       1.5     224     261 ..     101     148 ..      69     175 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHH CS
       CAP_N 193 hveWvksflqilkeLqaY 210
                 +v+W + + +i+++L ++
  CDO71407.1  40 EVDWLSPYNHIFSDLVDF 57 
                 69*************987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 8.3e-05
                 TSBE............SSC--XXXXXXX....XX..XXXXXX....... CS
       CAP_N 224 kGkdaeealk.....aaaaaasaaaaggpppPpP..pPppasvf....e 261
                 +  +ae+++      + a++a+a+a  +p pPpP    ppa++     +
  CDO71407.1 101 DNNSAEDTVVpldipPVAPHAAAPAVVAPGPPPPaaA-PPAPPIhgapT 148
                 4444555444565542233333333333444444322.23322223332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2255.38
//
Query:       CDO71408.1  [L=602]
Description: hypothetical protein BN946_scf184909.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-209  696.0   0.0   3.3e-209  695.8   0.0    1.0  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  695.8   0.0  1.8e-213  3.3e-209       1     517 []      69     598 ..      69     598 .. 0.97

  Alignments for each domain:
  == domain 1  score: 695.8 bits;  conditional E-value: 1.8e-213
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 k+++g+a+++ e +pc++hl  l+++vk+++++ g+++++f t+gvsDgi+mg++ m+ysL+sR+liadsvet++ +++lD++v+i+gCDK++Pg+lma
  CDO71408.1  69 KAMVGVASVWYEGNPCNKHLLGLGQHVKKSLQDTGIIGYQFGTVGVSDGISMGTSAMSYSLQSRDLIADSVETAAGGHWLDGMVVIPGCDKNMPGVLMA 167
                 789************************************************************************************************ PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk...kldlssvfeavgal.aagkiseeeleele..eaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaer 192
                   rln+P ++v+gG++++g+++   +ld++s+f+++g++ ++gk +e+e e+++  ++acpg+G+C+gm+TAntma++aea+G++lpgs+s pa+++e+
  CDO71408.1 168 LGRLNRPGLMVYGGTIRPGSCEgapQLDIVSAFQSYGKYlQSGKTEEAERERYNtiRHACPGPGACGGMYTANTMASAAEAMGMTLPGSSSYPAEYPEK 266
                 ******************99888899***********76256888877776654228****************************************** PP

    ILVD_EDD 193 kelaeeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedlhraGGvpav 291
                  +++++ g ++ +l+ek+++prdi+t++afeNA+v++++lGGStN vlHl+A+A+++g++lt+ddf+++s++vp++a+lkPsgky med++++GG+p +
  CDO71408.1 267 LKECQSIGPAMWNLLEKNIRPRDIMTRSAFENAMVLTMILGGSTNVVLHLIAVAHSVGIDLTIDDFQAVSDRVPFIADLKPSGKYVMEDVYKIGGIPKI 365
                 *************************************************************************************************** PP

    ILVD_EDD 292 lkeLlkagllhgdvltvtgktlaenlee.aev.......keqdvirplekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdseeeave 382
                 l++Llk++l++g+ ltvtg+ l+enl++ +         ++qdvirplekp++++g+l++L+GnLap+Gav+K++++e   l f+g+Ar fdse+e+v+
  CDO71408.1 366 LAYLLKNNLIDGNNLTVTGRPLGENLDRwT-HehgelefTRQDVIRPLEKPIKETGHLRILRGNLAPGGAVAKITGKE--GLGFTGKARTFDSEDEFVA 461
                 **************************8852.35799999**************************************9..999**************** PP

    ILVD_EDD 383 ailkgkikagd..vvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlelev 479
                 a+++g+ik+g+  vvv+ry GPkGgpGmpEmlkpts ++g+glg++va++tDGRfSG+s+g++ighv+PEA++gGpialv+dGDii++d+ k+++el+v
  CDO71408.1 462 AVESGSIKKGEktVVVLRYLGPKGGPGMPEMLKPTSLIMGAGLGHDVACLTDGRFSGGSHGFCIGHVVPEAQVGGPIALVRDGDIISVDAVKNSIELQV 560
                 **********999************************************************************************************** PP

    ILVD_EDD 480 seeelaaRraawkpekkvktrgllakyaklvssaseGA 517
                 s++el++Rra+w+p + + ++g+l ky klv++as+G+
  CDO71408.1 561 SADELERRRASWAPPPLKVSQGTLYKYVKLVEDASRGC 598
                 **************444445*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3986.46
//
Query:       CDO71409.1  [L=884]
Description: hypothetical protein BN946_scf184909.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-30  105.4   0.0    1.9e-09   37.2   0.0    3.1  3  Septin    Septin
    2.3e-12   46.8  28.4    3.5e-08   33.4  11.4    2.9  3  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   8.5e-12   7.6e-08      15     123 ..      61     182 ..      58     184 .. 0.78
   2 !   32.3   0.0   6.8e-12   6.1e-08     127     179 ..     230     284 ..     226     309 .. 0.78
   3 !   37.2   0.0   2.1e-13   1.9e-09     218     270 ..     382     431 ..     337     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 8.5e-12
                 SSCCCCCCTTSSSS----..............--------------S-E..EEEEEEEETTCEEEEEEEE--..-BSSSSSHHCCCHHHHHHHHHHHHH CS
      Septin  15 lGkttlintlfetdliee..............ekleeasekkkktveik..kkkvvieedgvklnltviDtp..gfGdavdnskswepiveyideqfee 95 
                 +Gkt++++ l+ t+ i +              +  ++ + ++ +tv+i+   + + ++e+   lnlt+iDtp   f d+   +++ + i+++++ ++ e
  CDO71409.1  61 TGKTSFLRLLLDTSNIAStvsreqlasvakfvQG-SSGHTSHVRTVSINvdLAPDDVDEE-HPLNLTLIDTPslDFDDKHASERALQDILRHVEARLAE 157
                 6999999999999988888999999999866422.2222344556655521455566666.78*********55599********************** PP

                 HHHHCTSS--SS-----EEEEEEEE-TT CS
      Septin  96 ylreesklkRkkivDkRvHaclyfisPt 123
                  l++e+k+      D+ vH clyf++P+
  CDO71409.1 158 SLDDERKA---LNGDHHVHLCLYFLDPN 182
                 ****9875...468************97 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 6.8e-12
                 S-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--..--- CS
      Septin 127 lkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeik..iyk 179
                 l p d++++++ls +vn++Pv+a aD+lt++ l+++K  ir++l+e  i   i++
  CDO71409.1 230 LPPSDITAIRRLSARVNVLPVVACADVLTTDRLTAVKMAIRRDLAEAGIGfgIFD 284
                 5678*****************************************9987522565 PP

  == domain 3  score: 37.2 bits;  conditional E-value: 2.1e-13
                 SEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHH CS
      Septin 218 kkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRse 270
                 k    R+y+WG ++v + +h++Fl+Lr +++ +h+e L+++t+e l+e+++se
  CDO71409.1 382 K--FVRHYRWGSLDVMDASHCEFLHLRGAIF-HHMETLQKYTREYLFEKFKSE 431
                 3..3489***********************9.9*****************987 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4  11.4   3.9e-12   3.5e-08       2      39 ..     529     565 ..     528     566 .. 0.94
   2 ?   -1.6   0.2      0.33     3e+03       2       7 ..     743     748 ..     742     749 .. 0.87
   3 !   23.2   3.6   6.1e-09   5.5e-05       9      38 ..     775     804 ..     772     806 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.9e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 aC+ Cr++K KCd+++PaC++C k++ +C  y+ s kr
  CDO71409.1 529 ACNFCRSRKLKCDGGRPACGQCYKRQNPCD-YTASNKR 565
                 9*****************************.9998887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.33
                 S-HHHH CS
     Zn_clus   2 aCdnCr 7  
                 aC+ Cr
  CDO71409.1 743 ACNFCR 748
                 9****9 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 6.1e-09
                 CT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus   9 kKvKCdakkPaCsnCkklnleCtfysessk 38 
                 +K++Cd+ +P+Cs+C +++l C + +++++
  CDO71409.1 775 RKTRCDGAHPTCSSCSRRSLRCNYVNDPTT 804
                 9**********************8877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5804.08
//
Query:       CDO71410.1  [L=650]
Description: hypothetical protein BN946_scf184909.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-50  170.4   0.2    2.7e-19   69.5   0.0    4.0  4  Septin        Septin
    7.4e-07   28.9   0.0    1.1e-05   25.0   0.0    2.2  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    8.4e-05   22.6   0.0    0.00017   21.6   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0014   19.1   0.0     0.0029   18.0   0.0    1.6  1  AAA_16        AAA ATPase domain
     0.0085   16.4   0.1       0.03   14.6   0.0    2.0  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.073   13.1   0.1         13    5.8   0.0    2.5  2  Dynamin_N     Dynamin family
      0.076   13.3   0.2       0.22   11.7   0.2    1.7  1  AAA_28        AAA domain
        0.1   12.0   0.1       0.29   10.6   0.1    1.8  2  SRPRB         Signal recognition particle receptor beta subun
       0.11   11.9   0.0       0.21   10.9   0.0    1.4  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.19   12.3   1.8       0.21   12.1   0.1    2.0  2  AAA_18        AAA domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   1.5e-22   2.7e-19       3     126 ..     123     259 ..     121     264 .. 0.82
   2 !   39.0   0.0   3.1e-13   5.6e-10     126     177 ..     311     362 ..     306     380 .. 0.87
   3 ?    1.3   0.0     0.092   1.6e+02     190     210 ..     464     484 ..     433     498 .. 0.69
   4 !   55.2   0.0   3.6e-18   6.5e-15     220     277 ..     575     632 ..     569     635 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 1.5e-22
                 EEEEEEEEEBTTSSCCCCCCTTSSSS----........--------.------S-EEEEEEEEET.TCEEEEEEEE---B....SSSSSHHCCCHHHHH CS
      Septin   3 ieftlmvvGesglGkttlintlfetdliee........ekleease.kkkktveikkkkvvieed.gvklnltviDtpgf....Gdavdnskswepive 87 
                 ++f++mv+G++g+Gkt+l++ l+et +i+           +++      k+t +i+++ v+i e    +l l viDtpg     G ++  ++  + iv+
  CDO71410.1 123 TTFNIMVAGAQGTGKTSLLRLLLETADISPtatadqkaA-MDRFLRgAPKRTETIQTACVEICESkYDRLLLSVIDTPGLdfqeGHELKLERQVSSIVK 220
                 68***********************99987555544321.11111224577888998888776652679*********966677999999********* PP

                 HHHHHHHHHHHHCTSS--SS-----EEEEEEEE-TTSSS CS
      Septin  88 yideqfeeylreesklkRkkivDkRvHaclyfisPtghg 126
                 y+d qf++ l+eesk+ R+++ D+ +H c+y+i+P+   
  CDO71410.1 221 YLDAQFSDTLNEESKVVRQSKGDQHIHLCIYMIDPSTVT 259
                 ***********************************9765 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 3.1e-13
                 SS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--- CS
      Septin 126 glkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeiki 177
                  +   d++++++++ ++n++PviaKaD+lt++ l ++Kk ir++l++ +++ 
  CDO71410.1 311 TMSSTDIRVIRRIAARANVLPVIAKADSLTNDKLAAIKKVIRRDLHAANLDF 362
                 57788*****************************************999875 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.092
                 CHHHHHHHHHHC-SEEB-SSS CS
      Septin 190 eakelseklkeslPfaivgsn 210
                 ++  ++ +l e+lPfa+++ +
  CDO71410.1 464 AHIVAKTDLSEQLPFAVITPE 484
                 44556889**********876 PP

  == domain 4  score: 55.2 bits;  conditional E-value: 3.6e-18
                 EEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXX CS
      Septin 220 vrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklke 277
                 v  Rk++WG+v+v  ++h+dF +Lr+++l+th++ Lk +t+e+lYe+yR+ekl ++++
  CDO71410.1 575 VFVRKFRWGTVDVLSPEHCDFAALRTAVLSTHMKLLKIRTKEVLYEKYRTEKLLARRA 632
                 5679************************************************988765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.4e-09   1.1e-05       4      79 ..     125     200 ..     122     216 .. 0.81
   2 ?    1.6   0.0     0.096   1.7e+02     120     154 ..     324     397 ..     305     513 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 6.4e-09
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCH.SHHHHHHTSCSSCEEEEEET.TCSSEEEEEEEESS CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDt.lkeErergiTiksaaislek.etkkylinliDtPG 79 
                  ni+++g   +GKt+L+  Ll +t +is   ++a++++++D+ l    +r  Ti++a +++ + ++++ l+++iDtPG
  CDO71410.1 125 FNIMVAGAQGTGKTSLLRLLL-ETADISPT-ATADQKAAMDRfLRGAPKRTETIQTACVEICEsKYDRLLLSVIDTPG 200
                 79***************8777.55566663.445556778862566779999********996699************ PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.096
                 HTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH......................................H CS
    GTP_EFTU 120 kegvpiivfiNKmDrl.kaelkeiveevkqklsrk......................................e 154
                 + + ++  +i K+D l +++l  i++ ++++l++                                        
  CDO71410.1 324 AARANVLPVIAKADSLtNDKLAAIKKVIRRDLHAAnldfgvfgpvrageerpkssasptngpihghgdtngngA 397
                 345568999******98999999999999999666666666666666665555555555555555555555541 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.7e-08   0.00017       1      87 [.     126     227 ..     126     273 .. 0.58

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.7e-08
                 EEEEEESTTSSHHHHHHHHHT..............S.TEEESSSTTSSSSEEEEEEE.....ETTEEEEEEECGGC...........SSHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg..............e.kaivsdkpgtTrdinegrvk.....lkgkeielvDtpGl...........iegaseekglgk 68 
                 +++++G   +GK++L++ l++              +        p  T +i+++ v+     +++  + ++DtpGl                       
  CDO71410.1 126 NIMVAGAQGTGKTSLLRLLLEtadisptatadqkaAmDRFLRGAPKRTETIQTACVEiceskYDRLLLSVIDTPGLdfqeghelkleR----------- 213
                 589*****************755666655555322122244556677777777777744443334459*******5433333333330........... PP

                 HHHHHHCTSEEEEEEETT.T CS
    MMR_HSR1  69 aflaleeadlillvvdas.e 87 
                       +++ i+  +da+ +
  CDO71410.1 214 ------QVSSIVKYLDAQfS 227
                 ......33444444443332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-06    0.0029      20      71 ..     120     164 ..     113     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa 71 
                 r +++ ++++ G++G+GK+sl+r ll+ +  +     ++++dq    ++++ 
  CDO71410.1 120 RNPTTFNIMVAGAQGTGKTSLLRLLLETADIS----PTATADQK---AAMDR 164
                 455556899*****************988777....55555555...33333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-05      0.03       8      38 ..     127     161 ..     123     221 .. 0.77
   2 ?   -2.3   0.0       2.8   5.1e+03      27      58 ..     402     434 ..     397     463 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee....e 38 
                 ++v G  GtGKT llr lle++d+ + a+     +
  CDO71410.1 127 IMVAGAQGTGKTSLLRLLLETADISPTATAdqkaA 161
                 7899******************9988887776663 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.8
      AAA_22  27 eqldeeakaee.erpevvfvtlpsstsskdllr 58 
                 ++++e +++ee ++++v++  ++ ++++++ ++
  CDO71410.1 402 HSDEENEEPEErRSRPVIKLRPTRLSKPRSSRS 434
                 555566666668889999999999887776554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0075        13       1      21 [.     127     147 ..     127     157 .. 0.84
   2 ?    5.0   0.0     0.013        23      88     119 ..     178     209 ..     151     264 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0075
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 i+v G+q  GK+S+l  Ll+ 
  CDO71410.1 127 IMVAGAQGTGKTSLLRLLLET 147
                 89*************999874 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
                 SS-EEEEEEETTS-SEEEEE---B-SSSGTTS CS
   Dynamin_N  88 kkvillkilsllvkgltlvDlPGldsvnkrdq 119
                 +  + ++  + ++  l+++D+PGld ++ ++ 
  CDO71410.1 178 TACVEICESKYDRLLLSVIDTPGLDFQEGHEL 209
                 445555666677888999******98665553 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00012      0.22       2      22 ..     127     147 ..     126     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 i++ G+++tGKT+ll+ L ++
  CDO71410.1 127 IMVAGAQGTGKTSLLRLLLET 147
                 8999************99765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00016      0.29       5      43 ..     126     165 ..     123     225 .. 0.84
   2 ?   -3.1   0.0       2.5   4.5e+03      65      89 ..     235     260 ..     230     265 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                 EEEEE-STTSSHHHHHHHHHHS.S---B---SS-EEETTG CS
       SRPRB   5 avllvGlsdsGKTslftrLttd.svkktvtSqessaalkv 43 
                 +++++G + +GKTsl+ +L++   + +t t+ ++ a +++
  CDO71410.1 126 NIMVAGAQGTGKTSLLRLLLETaDISPTATADQKAAMDRF 165
                 5899************998866467777776665555554 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
                 HHHHHHHHHGGEEEEEEEEE.TTS-H CS
       SRPRB  65 klleklkaksslkglvfvvD.Stidp 89 
                 k++ + k  ++++  ++++D St+  
  CDO71410.1 235 KVVRQSKGDQHIHLCIYMIDpSTVTT 260
                 5666777778899999***9566654 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.21      40      60 ..     125     145 ..     100     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                   .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                    +++vaGa+g+GK+  l+ L+
    CDO71410.1 125 FNIMVAGAQGTGKTSLLRLLL 145
                   69***************9886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00012      0.21       1      21 [.     127     147 ..     127     237 .. 0.87
   2 ?   -2.4   0.3       3.7   6.6e+03     103     119 ..     624     640 ..     596     646 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 I+++G++G+GKt+l + L + 
  CDO71410.1 127 IMVAGAQGTGKTSLLRLLLET 147
                 99**************99664 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.7
      AAA_18 103 peelleRlekRgyeeak 119
                 +e+ll R ++R+ +e++
  CDO71410.1 624 TEKLLARRATRNISEDE 640
                 57777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 4252.18
//
Query:       CDO71411.1  [L=306]
Description: hypothetical protein BN946_scf184909.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-06   28.7   0.1     0.0024   18.2   0.0    2.5  2  CM_2      Chorismate mutase type II
  ------ inclusion threshold ------
      0.069   12.9   1.3        8.5    6.2   0.0    3.0  3  RPAP1_N   RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.7e-07    0.0024       4      51 ..      27      74 ..      24      91 .. 0.82
   2 !    8.1   0.0   0.00037       3.4       7      53 ..     172     235 ..     171     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.7e-07
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH CS
        CM_2  4 IdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerlee 51
                + +++d+i++ L eRa++a++  +y++ e ++++d ++e   le + +
  CDO71411.1 27 LTRLEDTIIFSLIERAQFAHNPKAYRRGEFKELRDIGFEGSWLEWFLK 74
                6799**********************888889*999998776666555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00037
                 HHHHHHHHHHHHHHHHHHHHHHHHHCTSG..................SS-HHHHHHHHHHHHHHH CS
        CM_2   7 iDdeileLLaeRaelakevgeyKkeeglp..................vydpeReaevlerleega 53 
                 +D e l+ +++R  + k v e K + + p                  +  p+ e+++l+rl+++a
  CDO71411.1 172 VDLEVLQAISKRVHYGKFVSESKFR-DDPaafiphiqsrnrealanlITKPAVEEKLLQRLRKKA 235
                 689999*****************43.333356656666666667777888888888888888833 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.39   3.5e+03      26      43 ..      26      43 ..      23      44 .. 0.85
   2 ?    4.1   0.1    0.0044        40      33      43 ..     226     236 ..     224     238 .. 0.89
   3 ?    6.2   0.0   0.00095       8.5      10      21 ..     285     296 ..     283     299 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.39
     RPAP1_N 26 LlesLdPkllefLlkRan 43
                +l +L + ++  L  Ra+
  CDO71411.1 26 ILTRLEDTIIFSLIERAQ 43
                788999999999999986 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0044
     RPAP1_N  33 kllefLlkRan 43 
                 kll++L+k+an
  CDO71411.1 226 KLLQRLRKKAN 236
                 9********99 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.00095
     RPAP1_N  10 rLasMspeEIee 21 
                 rL+ Ms+eEI +
  CDO71411.1 285 RLDGMSQEEIDA 296
                 9*********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2310.96
//
Query:       CDO71412.1  [L=147]
Description: hypothetical protein BN946_scf184909.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-16   58.4   0.2    1.2e-15   57.4   0.2    1.4  1  Thi4      Thi4 family


Domain annotation for each model (and alignments):
>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.2   6.7e-20   1.2e-15     171     235 .]      51     117 ..      48     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 6.7e-20
                 TTTTHHHHHH..HHCTTTS-----ECB-HHHHHHHHHHHECEEETTEEE-THHHHHHHT-EB--SB- CS
        Thi4 171 eivavvvkki..kleakiekvkgeksldaekaedaivkktrevvpnlyvaGmevaevdganRmGpif 235
                 ++   ++k+     +   ++++++++ld+++ae aiv++trev p+l+++Gme++e dg nRmGp+f
  CDO71412.1  51 QVSRAMIKRYfnMIMGLLKELGNMRGLDMNRAEPAIVNGTREVAPGLIMTGMELSEHDGSNRMGPTF 117
                 56666667763344566799**********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1176.94
//
Query:       CDO71413.1  [L=293]
Description: hypothetical protein BN946_scf184909.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-16   58.2   0.0    2.5e-15   56.7   0.0    1.7  1  NDK       Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.4e-19   2.5e-15       2     132 ..      24     150 ..      23     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.4e-19
                 EEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTS...ST CS
         NDK   2 rtlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaea...ap 97 
                 rt+++iK +a++  +  +i  r+ ++g++iv+ + ++++ e+  e        ++f +  e   +gpv++ vle+++a+e++++l+G  +p  a   +p
  CDO71413.1  24 RTVAIIKNHALN--HRFDIELRISDAGFEIVKERQMEFDIETDPETL-----FELFGSDFESFAEGPVWVYVLERRRAVEVWHSLMGDPDPDVArkdTP 115
                 8**********5..6679********************999865544.....3578899999******************************998899* PP

                 TSHHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTG CS
         NDK  98 gtiRadfgvslgeNlvHgSdseesaereiklfFke 132
                 ++iRa +g+s ++N+v gS + + ae +i+ +F +
  CDO71413.1 116 NSIRALYGISAQQNAVMGSVDVQMAELQIQAIFAS 150
                 ********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2129.18
//
Query:       CDO71414.1  [L=433]
Description: hypothetical protein BN946_scf184909.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.3e-113  377.5   0.0   7.6e-113  377.2   0.0    1.1  1  Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondria
  ------ inclusion threshold ------
        8.6    5.7   8.3         14    5.1   8.3    1.2  1  CAP_N        Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.2   0.0  8.5e-117  7.6e-113       1     323 []      90     411 ..      90     411 .. 0.97

  Alignments for each domain:
  == domain 1  score: 377.2 bits;  conditional E-value: 8.5e-117
  Tam41_Mmp37   1 lekilkkfpapiryafaYGSgvfkqkgy...kkkkkkkkmiDlifavsdpeewHslNlkqnpsHYsllrrl.gskliskvqeklgagvyfnplvevng 94 
                  le+i++kf+apiryafaYGSgvf+q+gy   + ++k+ +m+D++fav+++++wHs+N++q+p HY l +r+ gs+++s+v+  +  gv+fn++v++ng
   CDO71414.1  90 LESIVAKFEAPIRYAFAYGSGVFEQDGYpttNPASKDGPMLDFMFAVTHADHWHSINMHQFPGHYPLGARMlGSSFVSRVEA-IPPGVWFNSMVQMNG 186
                  689*************************8888889999****************************988888*********8.*************** PP

  Tam41_Mmp37  95 kliKYGVvsledllkDLleWdtLYlaGRlqKPvkilrddarirlanqvNlksAlraaLlllpekfteeeLyetiasLSYlGDlRmklggEnknKvkni 192
                  ++iKYGV+++++l++DLl+W+tLYl+GR++KP++i++ddar+rl++qvNl+sA+r+aLl+lpe+f+e eL+e+ia++SY GD+Rm l++En+ Kv ni
   CDO71414.1 187 VTIKYGVTTVDNLCSDLLNWNTLYLSGRMHKPIRIIKDDARVRLTQQVNLTSAVRTALLTLPESFSELELFERIAGFSYGGDVRMLLPAENRGKVGNI 284
                  ************************************************************************************************** PP

  Tam41_Mmp37 193 VekqleefrelYkplleelenvellekekekeeekkleqdlspearaellrkLPkklrskllskyekkl..skkkkdeeeflkkiakdeelaeevkka 288
                  V+kq ++f+elY++l+ +l+ v++  ++      ++++qd++p++ra++lrkLP++l + ++++y+++    +++ de+++++k+a d +l+++++k 
   CDO71414.1 285 VRKQAPQFKELYHRLVVALPGVHWPAHS------NTIQQDTNPHTRAAHLRKLPSNLLKGVTTSYASQPtiPAREADENMYWTKLAGDAALPTVIEKE 376
                  ************************9977......599***************************999875567889999******************* PP

  Tam41_Mmp37 289 ikkivaksslkqslkgvltaGvvksvkYaleKlkk 323
                  +++iv+++s+ q+lkg+++aG+vks++Y++eK+ k
   CDO71414.1 377 LHRIVRYPSAIQTLKGLISAGPVKSLRYSAEKVVK 411
                  ********************************977 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.3    0.0015        14     238     261 ..      19      48 ..       6      71 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0015
                 --XXXXXXX....XXXXXXXX......... CS
       CAP_N 238 aasaaaaggpppPpPpPppasvf......e 261
                 ++++a+++gp+pPpPpPp +s        +
  CDO71414.1  19 STEPATSSGPQPPPPPPPSQSKHptskplS 48 
                 344555566555555554333223333233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3458.03
//
Query:       CDO71415.1  [L=159]
Description: hypothetical protein BN946_scf184909.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-18   67.4   0.3    4.1e-10   39.4   0.1    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   2.3e-14   4.1e-10       1      54 [.      30      89 ..      30      97 .. 0.96
   2 !   26.6   0.0   1.7e-10     3e-06     220     276 ..     100     157 ..      90     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.3e-14
                  .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHH CS
  Aldo_ket_red  1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGeal 54
                  +l+lG++++g++      ++++ke +++ll++++eaG nf+DtA+ Y++ +se+++Ge +
    CDO71415.1 30 PLCLGGMSIGDQwekigmGFMTKEMSFKLLDAFYEAGGNFIDTANDYQNETSEKFIGETV 89
                  69*******************************************************965 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.7e-10
                   TS-HHHHHHHHHHHHHHHHTT-.-HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGG CS
  Aldo_ket_red 220 ertsknldaaeelselakehgv.slaqlalryalsqpavgivipgasnieqlednlda 276
                   e ++ +  +a+ l+e+a+e g  +++++a++y++++ + +++i+g +++e+ + nl a
    CDO71415.1 100 EHNETEKAMAKVLEEIAAEVGAsNIQAVAIAYVMQKVPYVFPIVGGRKVEHFRGNLTA 157
                   455666789999*******8888******************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1268.46
//
Query:       CDO71416.1  [L=246]
Description: hypothetical protein BN946_scf184909.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   61.0   0.0    1.9e-16   60.3   0.0    1.4  1  Eaf7       Chromatin modification-related protein EAF7


Domain annotation for each model (and alignments):
>> Eaf7  Chromatin modification-related protein EAF7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.1e-20   1.9e-16       2     105 ..      22     124 ..      21     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.1e-20
        Eaf7   2 eirLfkliiefkPaGihKhFrmlaiverlnkpdkytllqkekpksgkhtsiediwekLktlYdLkaldelenekeeeeeeeekekee...........k 89 
                 ei++f+++++++P+Gih+hF++l++ +++ +            ++g+ + ied+w+kL+++YdL+ l+ +e + +e   e++ +++             
  CDO71416.1  22 EIAFFRSLMRARPVGIHRHFHVLTMRNSILR------------DTGQLVAIEDLWDKLRSCYDLDILESIEADGYELPGESPASTPPlpvrspspsdnL 108
                 9******************************............99****************************99888877765555888888888877 PP

        Eaf7  90 akeleekkdFeLPede 105
                 + +    ++++LP+de
  CDO71416.1 109 SMHPFFRHEYALPQDE 124
                 8888899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1813.12
//
Query:       CDO71417.1  [L=925]
Description: Glycosyltransferase Family 57 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     7e-113  378.2  13.8   8.2e-103  344.9   6.2    2.1  2  Alg6_Alg8      ALG6, ALG8 glycosyltransferase family
    5.6e-35  119.7   0.2    8.8e-35  119.1   0.2    1.3  1  Ribosomal_L22  Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
      0.026   14.2   0.0      0.046   13.3   0.0    1.3  1  RE_Eco29kI     Eco29kI restriction endonuclease


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.9   6.2  1.4e-106  8.2e-103       9     323 ..      14     301 ..       2     310 .. 0.93
   2 !   37.9   0.8   1.7e-13     1e-09     380     484 .]     335     424 ..     316     424 .. 0.83

  Alignments for each domain:
  == domain 1  score: 344.9 bits;  conditional E-value: 1.4e-106
   Alg6_Alg8   9 ipmyrStDFEvqRnWlaiThslplseWytedlseWtLDYPPlfAYfeyllskvakkvldpemlalessrgyesestklFqRltVivsdlllfipavlll 107
                 +pmy  +D+E+qR+W+++T++lp+++Wyt dl++W+LDYPPl+AY+++l++ v++++ dp+++al++srg+e++  k+F+R+tV++ d +l++pa++++
  CDO71417.1  14 PPMY--GDYEAQRHWMELTIHLPIRQWYTYDLQYWGLDYPPLTAYVSWLCGIVGAWI-DPSWFALDKSRGIETPVSKVFMRATVLAFDTILYVPALVMF 109
                 8***..************************************************555.***************************************** PP

   Alg6_Alg8 108 vekakkkskkkkrlvllllillspgllliDhiHFQYNgvllGllllsiaallkkkdlllgallFvllLnfKqialylApayfvylLrkyclkkskkklk 206
                 ++  + +++++++ ++l+++l +p+l+liD +HFQYN+v+lGl+ll+ +++ +++dl lga++Fvl+L fKq+aly+Apa+  ylL+k+++       +
  CDO71417.1 110 TKVWQGTRSSRRQELALAVLLSQPALILIDFGHFQYNSVMLGLTLLAANFFAAERDL-LGAVFFVLSLGFKQMALYYAPAVGGYLLAKCLYLG----PS 203
                 855555568899999999***************************************.6******************************6643....35 PP

   Alg6_Alg8 207 vslkrllklgvvvlavfallfgPfl...asgeqlkqvlsRlFPfkRGLfedyvApNfWalynvvdkvlevvlkkaevasltrglvqdvsflvlpeilpk 302
                    + +l+lg++++a f++lf+Pfl   a  +++ + ++R+FPf+RGLfed+vA NfW++ nvv k++                      ++++ +l k
  CDO71417.1 204 EGSRLFLRLGLITTAAFIVLFLPFLppfAPFSAILDPITRIFPFNRGLFEDKVA-NFWCASNVVLKWKY---------------------IASHGVLVK 280
                 678899*******************66544889*********************.*************9.....................99999999* PP

   Alg6_Alg8 303 ltllltllailpslvklllkp 323
                 l+++lt+l +lp++v+ll++ 
  CDO71417.1 281 LSAALTALGFLPAVVTLLFSA 301
                 **************9999875 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 1.7e-13
   Alg6_Alg8 380 tfslfPLlfkdgellikvvltllwllllllslkklvkkslkkkkkkvlldrleklyllsllallvllvllellvlkkpperlpflplllisvycsvgvf 478
                 + s++PLl++dg+ +++v+l++lw+ l++++  +    s  k  +    + l+ l++++++a+l+l+ l el++  +pp++lp+l+++l++++ s+ vf
  CDO71417.1 335 YDSMWPLLKRDGLGVQYVALLVLWNRLVGYNPFN---LS--K--R----SLLQLLTVAIYVACLLLH-LSELML--PPPTHLPDLFPVLNVLI-STPVF 418
                 669**************************83333...33..1..2....234558888999899999.999999..899**************.***** PP

   Alg6_Alg8 479 vlflll 484
                  l++l+
  CDO71417.1 419 ALVWLW 424
                 999987 PP

>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.2   1.5e-38   8.8e-35       1     103 []     754     888 ..     754     888 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 1.5e-38
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT..-SST..............................THHHHHHHHHHHHHHHH..HT-GGGE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkf..skkk..............................aakfvlklLknaeanaelkgldvdsl 64 
                    a+g++lr++fk++reva ++ g k+++A +yL +  ++k+                              + kf+ +lLknae+na+ k+ dv++l
     CDO71417.1 754 ARGEYLRTHFKNMREVAAALTGLKLTKAYAYLSDvkDHKQvipfrrfaggvgrasqakqfkatqgrwpekSVKFITRLLKNAESNADAKNIDVEDL 849
                    7999******************************866666******************************************************** PP

                    EEEEEEEEEEEEEEEEEEESTTEEEEEEEEEEEEEEEEE CS
  Ribosomal_L22  65 vIeeiqvnkgpklkrrtyrArGrinpirkspchievvlk 103
                    +I++i v+++pk++rrtyrA+Grinp++ +pch+e++l+
     CDO71417.1 850 YIKNIVVQQAPKTRRRTYRAHGRINPYQGHPCHVEIILS 888
                    *************************************95 PP

>> RE_Eco29kI  Eco29kI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.7e-06     0.046      37      91 ..     804     858 ..     777     862 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.7e-06
  RE_Eco29kI  37 vGKavpkgarkgeeskkavegkeLfkRlreHarsieqaenldladFrvrflvvdd 91 
                 vG+a    + k+++++  +++ + ++Rl + a+s + a+n+d++d +++ +vv++
  CDO71417.1 804 VGRASQAKQFKATQGRWPEKSVKFITRLLKNAESNADAKNIDVEDLYIKNIVVQQ 858
                 8999999999999999999*******************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5947.93
//
Query:       CDO71418.1  [L=206]
Description: hypothetical protein BN946_scf184909.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-29  101.4   0.3    2.7e-29  100.9   0.3    1.2  1  Nas2_N      Nas2 N_terminal domain
    1.6e-09   38.2   0.0    2.4e-09   37.6   0.0    1.3  1  GRASP55_65  GRASP55/65 PDZ-like domain
    2.6e-06   27.2   1.0    1.9e-05   24.4   1.0    2.1  1  PDZ_6       PDZ domain
    1.9e-05   24.9   0.0    4.1e-05   23.8   0.0    1.5  1  PDZ_2       PDZ domain
  ------ inclusion threshold ------
      0.039   13.9   0.0         11    6.1   0.0    2.3  2  Hjc         Archaeal holliday junction resolvase (hjc)


Domain annotation for each model (and alignments):
>> Nas2_N  Nas2 N_terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.3   7.6e-33   2.7e-29       2      78 ..      11      87 ..      10      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 7.6e-33
      Nas2_N  2 keLekkkdeiekeieelsevLesqnvgmdgplvDeegFPrsDidvvavrtaRnriiclqNDlkelmkeieealaelh 78
                ++L+++kd++e+e+e+  ++L+s+ v+md+plvD+egFPr+Did++avr+aR rii+++ND+k+lm++i  al+e++
  CDO71418.1 11 RSLMARKDALEAEMEAQFSILQSNAVTMDTPLVDSEGFPRDDIDIWAVRHARVRIIEMRNDHKSLMDKIMLALQEVY 87
                78************************************************************************998 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   6.7e-13   2.4e-09      31     127 ..     103     201 ..      53     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 6.7e-13
                 EEEEEE-TTTTTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE....SSSS..STSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSSTTTS CS
  GRASP55_65  31 slrlaslekaaeevwhvldvlegsPaakagLvpksDYiiGldk...gllk..geedlselveaheekelkLlvYnsesdevrevtvkpsrewGgegalG 124
                  +  ++++  ++   +v  v +gsPaa+agL+p +D ++ +     +l++  + + l elv a+e++e+ + v  se+  v+   + p+r wGg+g+lG
  CDO71418.1 103 RVDASDAT-ILQPFAKVDGVAPGSPAASAGLLP-EDLVLSFGPltkSLFTgsSLQPLAELVAAQENQEVAVEVLRSEDRRVKLTFI-PRRGWGGRGLLG 198
                 44444554.6677889999*************9.6999987544447777445678**************************9999.************ PP

                 EEE CS
  GRASP55_65 125 cdv 127
                 c++
  CDO71418.1 199 CHI 201
                 *97 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   1.0   5.3e-09   1.9e-05       2      56 .]     118     175 ..     117     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.3e-09
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvN..Gqp.veglsladvaallrgsagesvvlvvrr 56 
                 V  V pgsPA+ AGl + D++ls++   ++  +g sl+ +a+l+++ ++++v ++v r
  CDO71418.1 118 VDGVAPGSPAASAGLLPEDLVLSFGplTKSlFTGSSLQPLAELVAAQENQEVAVEVLR 175
                 789*********************9553446889999999999999999999999876 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.1e-08   4.1e-05      16      75 ..     109     179 ..      90     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.1e-08
                 EEEEE.......E-TTSGGGGT.--TT-EEEEET..TB--SSHHHHH..HHHHTS-TT-EEEEEEEETTEE CS
       PDZ_2  16 vlvvs.......VkeggPaakaglkagDvilkvd..gkkvksledli..slllkkkpGdtVkltvlRdgkk 75 
                 +++ +       V +g+Paa agl ++D +l+++   k + ++++l+   +l +++++++V ++vlR  ++
  CDO71418.1 109 ATILQpfakvdgVAPGSPAASAGLLPEDLVLSFGplTKSLFTGSSLQplAELVAAQENQEVAVEVLRSEDR 179
                 555555555666**********************4445566777777446777**************8776 PP

>> Hjc  Archaeal holliday junction resolvase (hjc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0039        14      23      51 ..      45      73 ..      40     120 .. 0.86
   2 ?    6.1   0.0    0.0031        11      25      56 ..     152     183 ..     145     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0039
                SSSSSSSS-SEEEEETTEEEEEEEEEESS CS
         Hjc 23 SggatkplpDviAirgdvvlviEvKsskk 51
                S g +++  D+ A+r++ v +iE++   k
  CDO71418.1 45 SEGFPRDDIDIWAVRHARVRIIEMRNDHK 73
                677788889***************98765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0031
                 SSSSSS-SEEEEETTEEEEEEEEEESSSEEEE CS
         Hjc  25 gatkplpDviAirgdvvlviEvKsskkeriyl 56 
                 ++ +pl  ++A +++  +++Ev  s ++r++l
  CDO71418.1 152 SSLQPLAELVAAQENQEVAVEVLRSEDRRVKL 183
                 4445999*******************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1442.09
//
Query:       CDO71419.1  [L=568]
Description: hypothetical protein BN946_scf184909.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-26   90.7   0.0    1.4e-25   90.0   0.0    1.3  1  AidB_N         Adaptive response protein AidB N-terminal doma
      2e-16   60.5   0.2    3.9e-16   59.6   0.2    1.5  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    7.2e-10   38.9   0.0    1.6e-09   37.8   0.0    1.7  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
     0.0031   17.8   0.0     0.0078   16.5   0.0    1.6  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
  ------ inclusion threshold ------
       0.14   12.9   0.0       0.35   11.6   0.0    1.7  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain


Domain annotation for each model (and alignments):
>> AidB_N  Adaptive response protein AidB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0     4e-29   1.4e-25       2     154 ..       8     164 ..       7     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 4e-29
      AidB_N   2 qpppledvnlfasdpaLqeavaregaaea....aeelaalGellgsaevlelarlanrnpPrlrthDrfGrRiDevefhpayhalmaaaveaglhasaw 96 
                 qp p+ + n +++dp+L  +++r+++++     +++l+++G  + + +++el ++a   pP+l ++D++GrR+D ++++++++ l +   ++g+ ++a+
  CDO71419.1   8 QPVPFIEGNPYTTDPVLPVLLKRILPSDVfqdvDKDLQRFGGEVLT-TMRELTKRA--TPPQLVQYDNWGRRVDDLRTSEGWRGLKDVFHREGIVSIAY 103
                 899999********************8888888*********9999.9********..9**************************************** PP

      AidB_N  97 e.earegahvaraallyllaqveaGhlCPltmThAavpaLk..aepalaeewlpkllsrdY 154
                 e ++re+++   +a+l+++a   + + CP++mT++ +++L+  ++pal++e+lp+l+srd+
  CDO71419.1 104 ErKYREHSRPYGFAKLFIAAADSDVTDCPMSMTDGVARVLEliGSPALKQEVLPRLISRDP 164
                 *999************************************5479***************97 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.2   1.1e-19   3.9e-16       1     148 [.     297     456 ..     297     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.1e-19
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC..-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.......... CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafg..kplidhqlvreklaemaaeleaarllvyraaealdagkpd.......... 84 
                    ++G+++++  ln +R   a+++++ +r++l  a ++++ r+ +g  + l + +l   +la++++  +a+   v+  + +l +++            
     CDO71419.1 297 NQGVKLITPVLNITRTHSAIGSVAYLRKCLAIATAHSNGRAIKGgrQLLRNTPLHVAELAKLHVLYRALVHFVFGSVVLLGKAECGvateneglrl 392
                    79**************************************9888745567889999***************9999998555544444667778889 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  85 raeasmaKlfaselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarr 148
                    r  + ++K+fa++ ++++++++m +lGg+Gy+ee+++ +l++d +v  i+eGt  ++ +++ r+
     CDO71419.1 393 RLLTPAIKAFAADKCVTAMEECMTMLGGEGYMEENGITKLIQDGLVEKIWEGTITVLSLDLVRA 456
                    *****************************************************99988887776 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   4.6e-13   1.6e-09       3      95 ..     173     286 ..     171     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.6e-13
                    E---SS-SS-GGG---EEEEETT.E......EEEEEEEEEEETTTT-SEEEEEEETS---.----EEEEEEE..GG...............GEEE- CS
  Acyl-CoA_dh_M   3 alTEpqaGsdvasvkttaaerdgge......yvlnGeKiwitnaaiatlalvlartekpd.rarglslflvprdap...............gvsvr 76 
                    ++TE+ +Gsdv +++t a++  g          ++G K+  ++a+++++al lart++pd ++rglslfl+p + p               ++ ++
     CDO71419.1 173 WMTERPGGSDVSRMETVATPVPGAAspygpqDKIDGFKW-FSSATDSDVALALARTGRPDdGSRGLSLFLIPVRLPlvrapgaprppaltnNIYIH 267
                    79*************977666654456666689*****5.56788**********999999***********77777888899999***999999* PP

                    ----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M  77 rieeklGlrglptgelvfe 95 
                    r+++k G++ +pt+el ++
     CDO71419.1 268 RLKNKFGTKIVPTAELSIQ 286
                    *************999876 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.2e-06    0.0078      11     115 ..     322     428 ..     314     435 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.2e-06
                    HHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2  11 AraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraeal...aaagkevtvedraearraaalavelaiaavdalfe 103
                    +r +la ++++ ++r  +++++ l+  p   ++la++    +A+  ++   +    ++   +a+++e   ++r+   + +a+a++ ++ a+++++ 
     CDO71419.1 322 LRKCLAIATAHSNGRAIKGGRQLLRNTPLHVAELAKLHVLYRALVHFVFGSVVLLGKAecgVATENE-GLRLRLLTPAIKAFAADKCVTAMEECMT 416
                    5788999999999999988888889999999999999999999999998888775443333333333.45566666677***************** PP

                    HCGGGGGBTT-H CS
  Acyl-CoA_dh_2 104 aaGgsalrkesp 115
                    + Gg ++ +e+ 
     CDO71419.1 417 MLGGEGYMEENG 428
                    *******99985 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.35       9     111 ..      53     161 ..      49     163 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
                    HHHHHHHHHHTHHHHHHHHHHT.SGH..HHH...HHHHHH....TTCTSTTS-GGGTS--..S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHH CS
  Acyl-CoA_dh_N   9 dtvrefaeeelaphaaewdeeg.efp..rel...wkklae....lGllgitvpeeygGag..ldyleaaivaeelaradaglalllgvhsslvapa 92 
                     t+re+ ++  +p+  ++d+ g +++  r +   w+ l++     G++ i++  +y       ++    i+a     +d++    +++ ++ va +
     CDO71419.1  53 TTMRELTKRATPPQLVQYDNWGrRVDdlR-TsegWRGLKDvfhrEGIVSIAYERKYREHSrpYGFAKLFIAAADSDVTDCP----MSMTDG-VARV 142
                    56777777777777777776665555331.033455544322226888888888888876334566666666666666666....555555.5589 PP

                    HHHHS-HHHHHHHHHHHHT CS
  Acyl-CoA_dh_N  93 ilrfGteeqkrryLpklas 111
                    +   G+++ k++ Lp+l+s
     CDO71419.1 143 LELIGSPALKQEVLPRLIS 161
                    *****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4090.65
//
Query:       CDO71420.1  [L=500]
Description: hypothetical protein BN946_scf184909.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00082   19.2   4.2    0.00082   19.2   4.2    1.6  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
  ------ inclusion threshold ------
      0.027   14.2   8.8      0.076   12.7   8.7    1.9  1  Cation_ATPase_C  Cation transporting ATPase, C-terminus
      0.035   14.2   0.7      0.035   14.2   0.7    3.2  3  SdpI             SdpI/YhfL protein family
      0.044   13.9   0.7       0.13   12.4   0.7    1.8  1  DUF4079          Protein of unknown function (DUF4079)


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.59   2.6e+03     174     174 ..     107     107 ..      76     154 .. 0.50
   2 !   19.2   4.2   1.8e-07   0.00082     123     233 ..     175     289 ..     155     297 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.59
  PhoLip_ATPase_C 174 k 174
                      +
       CDO71420.1 107 C 107
                      1 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.8e-07
  PhoLip_ATPase_C 123 lyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvale......tk...twtliliililgsi.llyflflllyssllpsss 206
                         s  i+++ ++v  +    +    d+ ++ tlvft+++l+ ++ +++       t+   t+  ++ ++ ++ i l+++l+++l++ + +   
       CDO71420.1 175 SAVSGTIWLILFAVQATR---QFIRKDHITIPTLVFTYIILALLVGMIIFaypkarTRhhdTFEATHRFAGWTAIaLVWCLIMFLIKDYQQ--- 262
                      333444555544443333...3456788899999999999999999988634444422333666799999999764788888888888654... PP

  PhoLip_ATPase_C 207 efygvleelfsspsfwlvlllvvvval 233
                      ++ +  + +++ p fwlvl++++ ++l
       CDO71420.1 263 PGQTLGQAVVRAPPFWLVLIMTCSIIL 289
                      55556899**********999988865 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.7   1.7e-05     0.076      49     180 ..     160     296 ..      87     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
  Cation_ATPase_C  49 kmlrriliqgllqalvtllvffltlllfgisekenkls.......snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaills 135
                      ++l+r++++g + + +++    ++l lf++++ ++ ++         ++  +++  lv + if +  +r+r++  f++ + f   +  +a++ +
       CDO71420.1 160 RILGRVYTIGGIHSGSAVSGT-IWLILFAVQATRQFIRkdhitipTLVFTYIILALLVGMIIFAYPKARTRHHDTFEATHRFAG-WTAIALVWC 251
                      556666444444444444433.2222344455444444555666688899999999*********************8888877.899999999 PP

  Cation_ATPase_C 136 lllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvK 180
                      l++ ++  y ++++++ + +   +  wl++++ ++++l++  l+K
       CDO71420.1 252 LIMFLIKDYQQPGQTLGQAVVRAPPFWLVLIMTCSIILPWLRLRK 296
                      9999999999889999999999999*****************999 PP

>> SdpI  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.54   2.4e+03      28      39 ..     119     130 ..      86     151 .. 0.50
   2 ?   -0.8   4.7      0.38   1.7e+03      29      64 ..     162     219 ..     158     223 .. 0.48
   3 ?   14.2   0.7   7.9e-06     0.035      20      61 ..     232     288 ..     227     292 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.54
        SdpI  28 fagklwiiaGli 39 
                 f gk+ ++  ++
  CDO71420.1 119 FLGKVAVANIFV 130
                 223333333333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
        SdpI  29 agklwiiaG..........lilllla................lgavvlvllvlvlllvivpi 64 
                  g++  i+G          + l+l+a                +    lv+  ++l+l++++i
  CDO71420.1 162 LGRVYTIGGihsgsavsgtIWLILFAvqatrqfirkdhitipT----LVFTYIILALLVGMI 219
                 5666666665555555555333333456788888888855432....333222222222222 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 7.9e-06
        SdpI  20 etWrkahrfagklwiiaGlilllla....................lgavvlvllvlvlllvi 61 
                 +t++++hrfag++ i++ ++l+++                     +     +l++++ +++i
  CDO71420.1 232 DTFEATHRFAGWTAIALVWCLIMFLikdyqqpgqtlgqavvrappF-----WLVLIMTCSII 288
                 89*********98877776666666679999999886665432221.....22222223333 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   2.9e-05      0.13      44     107 ..     193     262 ..     171     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
     DUF4079  44 kkvrdeHvklgslllllvvlgaigglvlly.....lrrgklfpssHlyaGlavvvL.lalsaalvpeiqk 107
                 + +r++H ++  l++  ++l++++g++         r ++ f+  H +aG+++++L + l ++l+++ q+
  CDO71420.1 193 QFIRKDHITIPTLVFTYIILALLVGMIIFAypkarTRHHDTFEATHRFAGWTAIALvWCLIMFLIKDYQQ 262
                 557999********99999999888887776998888899**********99887725666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3288.58
//
Query:       CDO71421.1  [L=164]
Description: hypothetical protein BN946_scf184909.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-14   53.3   0.3    3.5e-14   52.9   0.3    1.2  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.3     2e-18   3.5e-14       2      78 ..      53     129 ..      52     130 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2e-18
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-.BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrp.vrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                 G+vhgG +++l D+ +++a+++ g +    v v++   f++p +r+ +elt++a v+ +g++ a+++v++++ +g+l+
  CDO71421.1  53 GTVHGGLIMSLTDTLGSLAVATKGQF-MTGVSVDIGTSFVKPaGRVNEELTAKAVVTGIGKSLAYTRVDFYNAQGQLA 129
                 9*************************.***************99******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1165.84
//
Query:       CDO71422.1  [L=593]
Description: hypothetical protein BN946_scf184909.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-47  161.1   4.9    5.8e-47  160.1   4.9    1.5  1  DER1      Der1-like family
  ------ inclusion threshold ------
      0.035   13.5   1.1      0.092   12.2   0.1    2.1  2  Jiraiya   Jiraiya


Domain annotation for each model (and alignments):
>> DER1  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   4.9   6.5e-51   5.8e-47       1     184 [.     380     566 ..     380     574 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 6.5e-51
        DER1   1 iPavTRllltatvvltllgrlelispaklvlsyelvvkkvQiwRlltsllyfsstgfsflinlyfiyqysskLEegsfrgrsadyvylllflavlitll 99 
                 iP+vTR++l+++v+++l+++++l++p +l++s+++ +  +Q wR +t+++yf+s++++f+++++f+++ys++LEe+sf++++ady ++ll +avl+ +l
  CDO71422.1 380 IPPVTRAWLALSVLTSLAVQCQLVTPLQLYFSFKAAFTNMQPWRAFTTFFYFGSISLDFVFHMFFFMRYSRMLEESSFANKKADYFWMLLQSAVLLLAL 478
                 8************************************************************************************************** PP

        DER1 100 glladlvvLgqalilaivYvwskknkdvqvsFfgvlrvkakylPlvllafsfllgesvv...vsligilvghiyyfledkypiklnGk 184
                 + l++l +L ++l+   +Y ws++ +++ +s fg+++++a+ylPl l+++  +l++++     +l+g +vgh+  fl+d+++ ++ G 
  CDO71422.1 479 SPLVNLPFLSSPLAFVPIYLWSRRHPSTPISLFGLVTITAPYLPLALVGLAWMLNGTWRaaaGDLLGCAVGHVAWFLRDVWTREMVGG 566
                 9988***************************************************9775333689***************99998775 PP

>> Jiraiya  Jiraiya
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.13   1.2e+03     108     125 ..      65      82 ..      40      87 .. 0.80
   2 ?   12.2   0.1     1e-05     0.092      32     106 ..     363     440 ..     319     447 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.13
     Jiraiya 108 lFflsipvfltalilytl 125
                  F++++ vfl  l + t+
  CDO71422.1  65 SFIVGLAVFLSLLFILTV 82 
                 577788888877666654 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1e-05
     Jiraiya  32 lkssesstvvseeeaavvlevavaLsaLal..tlnlscllvcalqllfavkllkteqgteRa.dkFLkdsravRivav 106
                 ++s+++  v  e ++ ++ +v+ a  aL++  +l + c lv  lql+f+ k + t+ ++ Ra  +F++ ++++   + 
  CDO71422.1 363 AESTSTMPVGIEAWVTQIPPVTRAWLALSVltSLAVQCQLVTPLQLYFSFKAAFTNMQPWRAfTTFFYFGSISLDFVF 440
                 4455556677778888899999988888872246678***************99999998873567766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4127.95
//
Query:       CDO71423.1  [L=318]
Description: hypothetical protein BN946_scf184909.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.5   0.0    1.6e-07   31.9   0.0    1.4  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   8.9e-12   1.6e-07     123     168 ..      81     128 ..      11     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8.9e-12
                 GTTG.GGCEEXSSSSEEEEEEEE.TTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 123 gpla.rflNHsCdpNcnltvqnv.lrgprvavfAtrdIkkGeEltidY 168
                 +pla rf+NHsC pN++  +  + ++  r++v+A+ +I+ GeE+t+ Y
  CDO71423.1  81 FPLAsRFFNHSCVPNAACKYLMQpENPVRMEVVALHNIAVGEEVTVPY 128
                 666549*********9777777788899*****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2299.79
//
Query:       CDO71424.1  [L=691]
Description: hypothetical protein BN946_scf184909.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-51  172.6   0.0    1.4e-50  171.7   0.0    1.5  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    1.3e-07   32.2   0.0      0.053   14.4   0.0    4.1  3  WD40           WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.061   13.6   0.0        1.1    9.6   0.0    2.5  2  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.0   2.3e-54   1.4e-50       3     157 ..     541     689 ..     539     690 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 2.3e-54
  Pro_isomerase   3 dietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.krGalamar 95 
                    +i+t  +G+i+++Lf+++aPk+venF+ ++++g+++g++FhRvi++fm+q+Gdp g+++ g       esi   +++dE+++ lkh ++++++ma+
     CDO71424.1 541 TIHTT-LGDIHLRLFPQQAPKAVENFVGHARSGYFEGVIFHRVIPKFMIQTGDPLGDGTGG-------ESIwgHEFEDEFSDDLKHdRPYTVSMAN 628
                    78995.**************************************************97633.......33334689*****999**888******* PP

  Pro_isomerase  96 tgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde.erpkknvkivsae 157
                    +g  pn++gsqFfIt++++p+ld+k+t+FG+V++G++vv +ie+v+td+ ++p +++ki+++ 
     CDO71424.1 629 AG--PNTNGSQFFITTTATPWLDKKHTIFGRVLSGLEVVHAIENVKTDKmDKPYEDIKIINID 689
                    98..8******************************************************9875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0014       8.5      22      38 .]     135     151 ..     119     151 .. 0.77
   2 !   14.4   0.0   8.8e-06     0.053       4      38 .]     160     195 ..     157     195 .. 0.92
   3 !    5.3   0.0    0.0069        41      14      38 .]     319     344 ..     306     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                   +l++ s Dg v++W+
  CDO71424.1 135 TEFLVTTSVDGIVKLWK 151
                 467999999*******6 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.8e-06
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ +++H  +v +++ s dg+++as  +Dgt +++d
  CDO71424.1 160 VKLYRAHlAPVVAVSASADGQLFASVAEDGTAKVFD 195
                 56799*****99***********99999******98 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0069
                 EEEEEETTSSEEEEEET.TSEEEEEE CS
        WD40  14 tslafspdgawlasGsd.DgtvriWd 38 
                 t++  spd++ +++ s  D+ +ri++
  CDO71424.1 319 TCITLSPDSSHFVTFSLpDRQIRIFN 344
                 9***********987767******97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00018       1.1      40      85 ..     169     214 ..     130     219 .. 0.86
   2 ?    0.9   0.0     0.094   5.6e+02      39      78 ..     316     356 ..     295     368 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                   v +++ + dg+l+a + +dg+ +++d+ + ++++ l+ + + + +
   CDO71424.1 169 PVVAVSASADGQLFASVAEDGTAKVFDVVNFDMINMLKLGYTPSAC 214
                  677788899**************************99998875444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.094
  ANAPC4_WD40  39 sevrsLaWkpd.gklLavaysdgevrlldaesgkvvhslsv 78 
                  s+ +++  +pd  ++  ++  d ++r+++  +gk+ + ++ 
   CDO71424.1 316 STPTCITLSPDsSHFVTFSLPDRQIRIFNFLTGKMTRRYDE 356
                  555566666662477889999*************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4471.37
//
Query:       CDO71425.1  [L=275]
Description: hypothetical protein BN946_scf184909.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-20   70.8  29.7    1.2e-10   41.3   7.6    2.7  3  zf-AN1        AN1-like Zinc finger
    3.4e-05   24.1  16.0     0.0022   18.3   1.9    2.3  2  Transp_Tc5_C  Tc5 transposase C-terminal domain


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2  10.7   1.3e-13   1.2e-09       1      38 [.      22      59 ..      22      61 .. 0.96
   2 ?   -2.3   0.1      0.61   5.4e+03      14      20 ..      69      75 ..      63      77 .. 0.72
   3 !   41.3   7.6   1.4e-14   1.2e-10       1      38 [.     114     151 ..     114     153 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.3e-13
      zf-AN1  1 CsfksCkkkdflpfkCryCgkvFClkHrlpedHdCkkl 38
                Cs +sC   dflpfkC++C + FC +H lp dH+C k 
  CDO71425.1 22 CSASSCLVVDFLPFKCQHCAHAFCRDHFLPADHQCDKY 59
                9**********************************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.61
      zf-AN1 14 fkCryCg 20
                  C+ C+
  CDO71425.1 69 PSCPLCN 75
                5799997 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 1.4e-14
      zf-AN1   1 CsfksCkkkdflpfkCryCgkvFClkHrlpedHdCkkl 38 
                 C+ ++C k +f p++C+ C++++C +Hr+p+dH C++ 
  CDO71425.1 114 CARPKCDKVLFSPIRCEWCKQQYCPQHRFPKDHVCSSV 151
                 99*********************************975 PP

>> Transp_Tc5_C  Tc5 transposase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   6.6   4.7e-05      0.42      28      63 .]      20      56 ..      14      56 .. 0.86
   2 !   18.3   1.9   2.5e-07    0.0022      24      63 .]     108     148 ..     103     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.7e-05
  Transp_Tc5_C 28 edCkiegCselafi..kCarCkellCFdHfvvsekhlC 63
                  ++C+ + C  + f+  kC +C + +C dHf+    h C
    CDO71425.1 20 KQCSASSCLVVDFLpfKCQHCAHAFCRDHFLP-ADHQC 56
                  68999999999997669*************95.67766 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.5e-07
  Transp_Tc5_C  24 ektsedCkiegCselaf..ikCarCkellCFdHfvvsekhlC 63 
                    k++++C+   C+++ f  i+C +Ck+  C +H +  + h+C
    CDO71425.1 108 AKSAPTCARPKCDKVLFspIRCEWCKQQYCPQHRF-PKDHVC 148
                   57889********985555**************99.588888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1942.21
//
Query:       CDO71426.1  [L=317]
Description: hypothetical protein BN946_scf184909.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-24   84.1   0.0    1.7e-23   83.3   0.0    1.3  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   9.5e-28   1.7e-23      25     184 ..      48     229 ..      34     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 9.5e-28
                 B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHH......HHH-GGG- CS
  His_Phos_1  25 LteeGreqAealaerlagepidaiysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeiaeeypeeleawlr......dpadvrpp 114
                 + ++ ++qA+a+++ l+++p++aiy+SplkRa  T ++++ea      p+++ + LrE +fG+ eg++++  ++      e++ r      ++ ++++p
  CDO71426.1  48 IADTEMKQAKAVGQSLSNIPFAAIYASPLKRALWTGQAVQEAQPdpkPPLTVSPLLREQHFGAAEGHPWQWDQDPNLTLEEHFARdlwpvlHERHQKFP 146
                 567889***********************************999999********************88776654333333333300001144556677 PP

                 BS-BHHHHHHHHHHHHH........HHHHHTTTSE.........EEEEE-HHHHHHHHHHHHT--GGGGGGB--....-TT-EEEEEE-SS CS
  His_Phos_1 115 ggEsledvaaRvaaale........elaarheget.........vlvVsHggvirallarllglpleelrrlel....dnaslsvlefdeg 184
                 +gEsl+d+ +R+++a+e        +                  ++v sHg +i  l+ +ll  + + ++  +     +n++++++++d +
  CDO71426.1 147 QGESLDDLFERAKKAIEelimphvwQ--------AaregkkgvhIAVASHGLCISELIPALLIKDESGIHPGDKyrglQNTAWTRVTVDVK 229
                 7****************555554331........2222334678**************999966665555333334469999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2207.96
//
Query:       CDO71427.1  [L=1102]
Description: hypothetical protein BN946_scf184909.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-223  742.7   1.6   4.5e-223  742.4   1.6    1.1  1  Ufd2P_core  Ubiquitin elongating factor core
    3.9e-30  103.8   0.5    2.3e-29  101.4   0.6    2.4  2  U-box       U-box domain


Domain annotation for each model (and alignments):
>> Ufd2P_core  Ubiquitin elongating factor core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  742.4   1.6    5e-227  4.5e-223       1     625 []     366     995 ..     366     995 .. 0.98

  Alignments for each domain:
  == domain 1  score: 742.4 bits;  conditional E-value: 5e-227
                 THHHHT--TTS....HHHHHHHT..TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT-GGGGSSS--GGGS--HHH CS
  Ufd2P_core   1 LGpllslsvlpdenepevakkyFsepktrsksdlkstysslrqelktiqenlveiiknllkassesRervlkwlakilnlNekrakiqvdpskvssdgf 99 
                 +Gpll+l+v+++e+ p++ak+yFs ++tr + +++s+++slr ++kt+q++l++i+++l++as+esRe+vl+++a+++n+N kra++qvdp +vssd f
  CDO71427.1 366 FGPLLALGVFEREW-PTIAKTYFSGHETRPHGEITSATASLRGTIKTLQSSLFQIFNALVRASTESREAVLQFFARAVNINRKRAGMQVDPATVSSDCF 463
                 7*************.89********************************************************************************** PP

                 HHHHHHHHHHHHGGGGSTT-TTGGGS-TTTTSS.-SSS--TT--BSSB-HHHHHHHHHHCTTS..---HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHH CS
  Ufd2P_core 100 mlNllavLlrLcepfldatfskidkidpnylllpskrldlkdetrlnadeeeveefyeqkeke..kpnFiteiFfltlkalhlglkpaisefkrllqel 196
                 m+Nl+++Ll +cepf+da++sk+d+id+ y+++ s+r+dl++etr+na+++e+e++ +++ ++  +pnFiteiF+ltl+a h+g +++++++++l+++ 
  CDO71427.1 464 MMNLQVLLLMFCEPFMDASYSKMDRIDTAYYAH-SSRIDLSEETRINATNDEAEQWRKEQPPAtgPPNFITEIFYLTLAASHIGQQKIVNNLEELSRQY 561
                 *******************************99.**********************966666689********************************** PP

                 HHHHHHHHHHTT-........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHSTT--TTSS---S-SSHTS-TTGGG CS
  Ufd2P_core 197 krlqdeleeleae........aaqleeqlkklkkelekllseklaleavlldpellqellkFlrlvaawllrvadpknlkpkkklklPlpeespeqfkv 287
                  +++++le+l+ +        +a++e++++  k + + l + ++a+e++l +pel+ ++++F+++v++w++r +dp++ +p+++++lPlp+e+p++f+v
  CDO71427.1 562 DEIRRHLETLNGDqswrgtpfQARTEAAINAAKAQQDALFAAQMAYEVQLGEPELVFRTISFVNFVSTWIIRFVDPRKRHPNPTIELPLPKEVPMAFRV 660
                 ********9998899************************************************************************************ PP

                 SBTHHHHHHHHHHHHHTTSTT-TTTT.-TTH..HHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TT.--TTHHHHHH-HHHHCCHHHHHHHHH CS
  Ufd2P_core 288 lPeffledivdfllfllrlkpkvlesllssldldeliefiivflrsseyiknphlraklvevlfkgslplse.kgalkklleshelakkhLlkaLlkfY 385
                 lPe+++ed++++ l+++r +p+ le   s    +e++ ++++fl+s++yiknp+l+ak+v+vlf+g++++ e +++l++ll++h++a khL++aL++fY
  CDO71427.1 661 LPEYLIEDVIEYHLYIIRQSPNSLEL--SGK--NEMLIWCLTFLTSTWYIKNPFLKAKIVDVLFIGTWSWGEhRSVLTSLLNTHPMALKHLMPALMNFY 755
                 **********************9999..665..9************************************99888************************ PP

                 HHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....-----HHHH CS
  Ufd2P_core 386 idvEktgqssqFydKfniRyniseilkslwknesyrnqltklakeneelFvrFinlllNDvtflldealskLkeikelqeeledqeewsslseeerqek 484
                 i+vE+tg+ssqFydKfn+R++i++i+k +w+n+++r++l+++a +n+e FvrF+nl++NDvt+llde+l+ L++i+++q e++d+++ +s++++ r+e+
  CDO71427.1 756 IEVEQTGASSQFYDKFNSRRSIAHIFKVIWNNQEHRDALKHEAAHNSERFVRFVNLMINDVTYLLDESLTDLAKIHDIQMEMKDRATFESKPPQYRRER 854
                 ************************************************************************************99999********** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCTT-HHHHHH CS
  Ufd2P_core 485 eesleqlerqaksylqlanetvkllklltkeipepfltpeivdrlaamLnynLdqLvGpkcknLkVknpekynFrPkelLssiveiYlnLskeeeFvka 583
                 e  l+qler++  y+ql+n+tv+llkl+t e++epf+ peivdrlaamL+ynLd+LvGp+c++L V n eky+F+Pk+lLs+i+++YlnLs++ eF++a
  CDO71427.1 855 EALLRQLERHTSTYVQLGNNTVDLLKLFTGETKEPFMVPEIVDRLAAMLDYNLDALVGPRCQELAVANREKYKFDPKQLLSDILQVYLNLSDQGEFARA 953
                 *************************************************************************************************** PP

                 HHH-TTT--HHHHHHHHHHHTTSTSSTHHHHHHHHHHHHHHH CS
  Ufd2P_core 584 vakDgRsYkkelFekavrilkregllseeelekfkelaqkve 625
                 va+D+RsY+kelFe+a+ i ++++l+s++e+ek++ ++ kve
  CDO71427.1 954 VAADERSYRKELFEQAAGIAQKRMLKSPDEIEKLRLFVVKVE 995
                 **************************************9996 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.7   1.6e+04      48      64 ..     699     715 ..     698     717 .. 0.85
   2 !  101.4   0.6   2.6e-33   2.3e-29       1      73 []    1010    1082 ..    1010    1082 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.7
                 B--GGGSEE-HHHHHHH CS
       U-box  48 pltqdqlipnlelKekI 64 
                 +lt+   i n+ lK+kI
  CDO71427.1 699 FLTSTWYIKNPFLKAKI 715
                 68888899999***999 PP

  == domain 2  score: 101.4 bits;  conditional E-value: 2.6e-33
                  SSGGGB-TTT-SB-SSEEEETTT.EEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHHCTC CS
       U-box    1 iPdefldpitlelmkdPvilpsg.vvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdefleekre 73  
                  iPdefldp++++lm+dPv lps+ vvvdrsti++hlls d  dPf+r+pl+ +++ipn elK++Id+fl+e+r+
  CDO71427.1 1010 IPDEFLDPLMYTLMRDPVTLPSSrVVVDRSTIKSHLLS-DTKDPFNRMPLSIEDVIPNVELKQRIDAFLSERRN 1082
                  8*************************************.*******************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 7125.72
//
Query:       CDO71428.1  [L=257]
Description: hypothetical protein BN946_scf184909.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-49  167.8   0.0    4.2e-49  167.7   0.0    1.0  1  Mon1      Trafficking protein Mon1


Domain annotation for each model (and alignments):
>> Mon1  Trafficking protein Mon1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   2.4e-53   4.2e-49     214     403 ..       4     255 ..       1     256 [. 0.96

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 2.4e-53
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX......................................................XXXXXXXXXXXXXXXXXX CS
        Mon1 214 edeesWiPiCLpkFnsngflyayvkfl......................................................eeekialvliSadkdaFf 258
                 +++ sW+P+CLpkF+s++f+ ayv fl                                                      ++ ++alv +S++ d F+
  CDO71428.1   4 SAAASWLPVCLPKFDSSAFVNAYVMFLsrsdghdtpatpatpevqspptadtpaetsaeetqsdedisssapslpiglapgQSPEVALVCVSGNAD-FE 101
                 56789****************************************************************************99**********998.** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX......XXXXX CS
        Mon1 259 elkelkekiiekleksellkelkealssk..klsvsdipipllrHFiykskknvQfvmseleapys.eeerkrllklYqklhasvhek......lklly 348
                 +++ + ++i +kl +++ll++l +a++s+  ++svsd+++p lrHF+yks+++vQ++m+ +e+py+ ++e++r+++lYq+l +++h+k      lkl+y
  CDO71428.1 102 AVRGWCDTISQKLSNDGLLNSLATAIRSGdtEYSVSDLGVPGLRHFVYKSRSHVQITMPLFEEPYDsPNEKRRVVTLYQTLFDAIHAKsgqertLKLQY 200
                 *************************97776689*******************************777*******************888888767**** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mon1 349 eesekltllawvtssfelYlvfnplvskkaliksankilkwikkeeerlFisega 403
                  ++ +++++ w+t+ felYl+++p++ k+a++ +an+i++w++kee+rlF+++++
  CDO71428.1 201 IRTGQESVMGWITQPFELYLALSPHLPKSAAVGAANAIARWVQKEEKRLFLRDAP 255
                 ***************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1876.53
//
Query:       CDO71429.1  [L=335]
Description: hypothetical protein BN946_scf184909.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-05   24.2   0.0    5.1e-05   23.5   0.0    1.4  1  BTB       BTB/POZ domain
  ------ inclusion threshold ------
       0.16   12.4   0.0       0.26   11.7   0.0    1.3  1  CelTOS    Cell-traversal protein for ookinetes and sporozoite


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.7e-09   5.1e-05      21     100 ..      32     120 ..      18     130 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.7e-09
                 EEEEE-HHHHHHH-HHHHHHHTST.....TTTTCCCE.EEEETTSGHHHHHHHHHHHHHSEEEC-....CGGGHHHHHHHHHHHT-HHHH CS
         BTB  21 kefkahkavLaarSpyFkalftsk.....eieessvs.eielddvepeafealLefiYtgeleit....seenleelLaaadllqiprlk 100
                   fk+h+ vLa +S++F+++++        ie+ + + +++     p ++ al++ +Y g    +    +   ++ +L++  ++ i  l 
  CDO71429.1  32 VAFKVHRGVLARHSEIFQSMLELAmpgasDIEATEDCpVVR-MHDRPAELSALIRALYDGAAFEHrgiqDFYHVAGILRLSTKYFIAYLR 120
                 679*********************88776333333333455.4457999***********988865555445566666666666555555 PP

>> CelTOS  Cell-traversal protein for ookinetes and sporozoites
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.26      67     109 ..     121     162 ..     110     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
      CelTOS  67 eiiKkvllevlksllpvvekivadavkPPvvdravYsvlvkPv 109
                 + + + ll++  ++l+  +++v  av  P vd ++Y   v+P+
  CDO71429.1 121 REAIRHLLQIWPHTLEGHDRFVERAVNAPLVDDMTYP-YVHPL 162
                 556678999999*************************.99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2494.24
//
Query:       CDO71430.1  [L=253]
Description: hypothetical protein BN946_scf184909.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-24   86.7   0.0    7.7e-23   81.3   0.0    2.0  1  Amidohydro_1     Amidohydrolase family
    5.2e-08   32.8   0.1    6.6e-08   32.5   0.1    1.1  1  Amidohydro_3     Amidohydrolase family
  ------ inclusion threshold ------
      0.074   12.7   0.0       0.17   11.6   0.0    1.6  1  tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
       0.13   11.6   0.0       0.17   11.2   0.0    1.1  1  A_deaminase      Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.7e-26   7.7e-23     178     344 .]      22     234 ..       2     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.7e-26
                   STCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHH.............. CS
  Amidohydro_1 178 vaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnllee.............. 260
                   v     ll++  ++ ah+++l+p+e++ l++   ++ +ahcp sn + + + ++lr+ald+Gv+vglgtD  a g s++++                
    CDO71430.1  22 VFRASNLLTP-STVQAHCTFLSPEELRGLAAT--GTAIAHCPLSNAYFSAEPFRLREALDAGVRVGLGTD-IAGGYSIDIMNAmrqavavsrmrega 114
                   4444678999.9********************..************************************.87777776655544455555566666 PP

                   ..HHHHHHHHHHCCTT.....TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.......CT...................... CS
  Amidohydro_1 261 ..lrlalklqrgllye.....deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl.......di...................... 321
                     +++++  + +   e     ++   +++keal++aT +gA algl++  Gs++vG ++D+  ++l       ++                      
    CDO71430.1 115 riMADMCSGSTARSSEgkhedGKPLSIDWKEALYLATRGGALALGLPEGCGSFTVGAPFDAQWIELvdgdgdgKSlgvldflddattpgavplnlem 211
                   665555543333333354555666789*************************************999776554228888999999999******999 PP

                   CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 322 laafvglkkdgnvkkvivkGklv 344
                   ++ +  l + +n ++v+v+G+lv
    CDO71430.1 212 IERWWCLGDTRNRRGVFVQGTLV 234
                   99999999999********9887 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   1.5e-11   6.6e-08     310     439 ..      34     172 ..       2     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.5e-11
  Amidohydro_3 310 rlehaegvtesqiervaalqvaagvqpvfnf.edelldsrlgperargs...tpvkellnagvkvalgsD.apvgpfdpwprigaavmrktrrgg.. 399
                     +h++++++++++ +aa + a++ +p +n+                 s   ++++e l+agv+v lg+D a + ++d +  ++ av    +r+g  
    CDO71430.1  34 VQAHCTFLSPEELRGLAATGTAIAHCPLSNAyF---------------SaepFRLREALDAGVRVGLGTDiAGGYSIDIMNAMRQAVAVSRMREGar 115
                   558**************************9930...............244589**********************************9999999** PP

  Amidohydro_3 400 .................evlrpdeelsleealalyTrgpAkalgledrkGtLevGad 439
                                    +  +    +++ eal l Trg+A algl++  G+  vGa+
    CDO71430.1 116 imadmcsgstarssegkHEDGKPLSIDWKEALYLATRGGALALGLPEGCGSFTVGAP 172
                   *****************999***************************9999999985 PP

>> tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.9e-05      0.17      28      50 ..     131     154 ..     126     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
                      SEECCTSSEEEEHHHHHHHHHT.T CS
  tRNA_int_endo_N  28 GkplidepLqLslvEAlYLlek.G 50 
                      Gk ++++pL  +  EAlYL+ + G
       CDO71430.1 131 GKHEDGKPLSIDWKEALYLATRgG 154
                      7889*****************955 PP

>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.9e-05      0.17     234     296 ..      49     107 ..      40     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
                  HHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHHHHHH CS
  A_deaminase 234 lalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYaiaaqv 296
                  la   + ++ cPlSN       + +   l+e l++g++v l+tD     ++++++ + +a+ v
   CDO71430.1  49 LAATGTAIAHCPLSNAYF----SAEPFRLREALDAGVRVGLGTDIAGGYSIDIMNAMRQAVAV 107
                  5667789********988....555555789*************9999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1787.93
//
Query:       CDO71431.1  [L=210]
Description: hypothetical protein BN946_scf184909.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-68  228.6  10.1    3.9e-68  228.4  10.1    1.0  1  EBP       Emopamil binding protein


Domain annotation for each model (and alignments):
>> EBP  Emopamil binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4  10.1   2.2e-72   3.9e-68       2     177 ..      16     196 ..      15     197 .. 0.96

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 2.2e-72
         EBP   2 llavlavllaalllskrllpksklkkdrllfiWfafdaliHlilEGsflynsffs.....sqsllaqLwkeYakaDsRyltadltvvslelltvllagp 95 
                 l++v av +aa++++k+llpk+++ +dr++fiW+afd++iH +lEGsf+y+s f      s++++aq+wkeYa+aDsR++tad+t+vslelltv+  g 
  CDO71431.1  16 LAFVSAVGIAAYIAAKSLLPKNASWQDRVTFIWLAFDGVIHYTLEGSFVYYSLFGrqvntSSGPMAQMWKEYALADSRWGTADPTIVSLELLTVFGVGT 114
                 78999****************999***************************5555555559************************************** PP

         EBP  96 lallvvyaiakekplrhllqivlataelyGgvlyfatewlegslnldtseplylwvYlvffNalWvviPllllvesvkeiak 177
                 ++++v+ ++++++p+rh+++ivl+t e+yGg+++f++ewl+gs++ldts++lylwvYlvf+N++Wv+iPl+l+++s+ +ia+
  CDO71431.1 115 MCFYVLKQLIQRDPARHYWIIVLSTSEIYGGWMTFCPEWLTGSPSLDTSNALYLWVYLVFMNIIWVFIPLWLMYDSYGHIAS 196
                 ******************************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1509.69
//
Query:       CDO71432.1  [L=502]
Description: hypothetical protein BN946_scf184909.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.003   16.9   0.0      0.003   16.9   0.0    4.0  2  ORC6            Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.7e-07     0.003      43     101 ..      49     111 ..      47     134 .. 0.88
   2 ?  -23.8  37.8         1   1.8e+04      92     188 ..     267     367 ..     195     460 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-07
        ORC6  43 chiCaelAaekLkekldlpy.svkkiPlppkaykklldlfrqsLsnss...satstPskspss 101
                 + iCa++Aae+L ++   +  ++  + l+pk++k  l++ +  L        a+++P+k+ ++
  CDO71432.1  49 PAICAYIAAEELGDTDVTEKvAQAASCLKPKVFKTTLNTVKAALAAAAasaAAAASPNKTSRR 111
                 68************986666799***********************99989899999987765 PP

  == domain 2  score: -23.8 bits;  conditional E-value: 1
        ORC6  92 tstPskspsspstdpkslrkqlfsTPtKsktlktalsa..sksssplkrrrklaneedgeeeeed.apswvstsir............dsrpeisrtls 175
                 ++tPs+s+ +p        ++l  +P+Ks   + +  a  s+ ++p+   rk a++   ee+eed   +  ++s r             + +++s   s
  CDO71432.1 267 PPTPSRSRIQP--------SALARSPSKSALRAPS--AdlSPRKTPSH-KRKVAFDGPIEEGEEDaFDALATPSKRqkfsspikdfpiTPAKTNSPGVS 354
                 34444444444........4444445554433333..24466666666.67777777888888885565555555566666665555322222222223 PP

        ORC6 176 pskslgdesilfn 188
                 p ks++  ++ + 
  CDO71432.1 355 PRKSSRLAQSAAA 367
                 3333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 3640.95
//
Query:       CDO71433.1  [L=142]
Description: hypothetical protein BN946_scf184909.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-18   67.2   0.0    1.8e-18   67.0   0.0    1.1  1  YjeF_N    YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0     1e-22   1.8e-18      89     171 .]       7      91 ..       1      91 [. 0.86

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1e-22
      YjeF_N  89 kpeedleekls...apvdlviDAllGiglrgelreelaeliewlnsseapvlavDiPSGldadtGavsgtavkadvtvtfgapkrg 171
                 +p++d ++ l    a++d+++DA++G++++ ++r+++ +++  + +++ p+++vD+PSG+++d G+v+  a+++dv v+++apk g
  CDO71433.1   7 EPSQDTQS-LRvalASSDVILDAIFGFSFKPPVRAPFDAALPLIAQAGLPIVSVDVPSGWNVDLGKVDDLALNPDVLVSLTAPKEG 91 
                 33333322.2246699********************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1060.88
//
Query:       CDO71434.1  [L=381]
Description: hypothetical protein BN946_scf184909.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-11   41.6   5.3    4.5e-10   39.5   5.3    2.3  1  zf-MYND   MYND finger
     0.0032   17.5   1.2     0.0032   17.5   1.2    2.1  2  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   5.3     5e-14   4.5e-10       8      38 .]     345     375 ..     302     375 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 5e-14
                 B-SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   8 ealkkCagCksvfYCskeCqradwksHkteC 38 
                 +a   C++Ck v+YCs+e+qr dw +H++ C
  CDO71434.1 345 FAGLVCSRCKLVKYCSAEHQRMDWDEHRRVC 375
                 44459*************************9 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   2.0         2   1.8e+04      19      30 ..     251     262 ..     242     263 .. 0.81
   2 !   17.5   1.2   3.6e-07    0.0032      16      44 ..     347     375 ..     302     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 2
    zf-Mss51  19 CpdCGiptycse 30 
                 Cp+ G    c+e
  CDO71434.1 251 CPNPGCTDNCCE 262
                 999998888886 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.6e-07
    zf-Mss51  16 dfeCpdCGiptycseehwedDyeahleic 44 
                  + C +C ++ ycs eh + D ++h+++c
  CDO71434.1 347 GLVCSRCKLVKYCSAEHQRMDWDEHRRVC 375
                 578************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2803.49
//
Query:       CDO71435.1  [L=160]
Description: hypothetical protein BN946_scf184909.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-51  175.7   0.0      2e-51  175.5   0.0    1.0  1  vATP-synt_AC39  ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> vATP-synt_AC39  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.0   1.1e-55     2e-51       1     150 [.      13     159 ..      13     160 .] 0.97

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 1.1e-55
                     HHHHHHHHGGGS--HHHHHHHTTS.-HHHHHHHHHTSGGGGG--.....SSSHHHHHHHHHHHHHHHTTTGGGGS-H.HHHHHHHHHHHHHHHHH CS
  vATP-synt_AC39   1 leArvramrsglLteedyenLlqcesledvkryLketdYgnfladelseplsrsdiekalreklarefnklreqapgpsrefldyllyrydidNv 95 
                     le++vr++++glLt+++y+nL+qce++ed++++L+ tdYgnfla+e+  p+s+s+i  ++++ l+++fn+lr++a++p+ +fl+y++y y+idNv
      CDO71435.1  13 LEGIVRGYKAGLLTQNQYNNLTQCETIEDFRTQLSATDYGNFLANEPL-PISTSTISDRATQVLVDQFNFLRSNAVEPLSKFLEYMTYAYMIDNV 106
                     689********************************************8.9****************************55*************** PP

                     HHHHHHHHH.T--GGGS-..--.S..S.SS-HHHHHHHHHSSSHHHHHHHHH.T-HHHH CS
  vATP-synt_AC39  96 klllrgklsgdldleeleeklhpl..g.elsaldldklieaksveelyeall.gtpyak 150
                     +l+++g+l+g ++ +el++++hpl  + +++al++     a++veely+++l +tp+++
      CDO71435.1 107 ILIITGTLHG-RNTNELLQRCHPLgvFdTMPALCV-----ATNVEELYHTVLvETPLGA 159
                     *********5.777************88*******.....****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1166.92
//
Query:       CDO71436.1  [L=419]
Description: hypothetical protein BN946_scf184909.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-28   98.1   0.0    6.2e-28   97.5   0.0    1.2  1  CRAL_TRIO     CRAL/TRIO domain
    2.9e-06   27.4   0.1    7.2e-06   26.1   0.1    1.7  1  CRAL_TRIO_N   CRAL/TRIO, N-terminal domain
  ------ inclusion threshold ------
       0.72    7.8   8.7       0.97    7.3   8.7    1.0  1  Herpes_BLLF1  Herpes virus major outer envelope glycoprotein 


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0     1e-31   6.2e-28       6     159 .]      90     251 ..      86     251 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 1e-31
   CRAL_TRIO   6 ggkvgihgrDkegrpvlylrlgrfdpk....klsleelvralvlvlerllkelee......dgqvegvtvviDlkglslskmlwkpisllkkilkilqd 94 
                  ++ ++h+ Dk+grp+ + ++g ++ +    + sle++ r +++ +e+l +e+ +      +++++g  vv+Dl g+++s++  ++ +++++  ++ qd
  CDO71436.1  90 CWPLYFHKVDKKGRPLNFHHFGGINLNklqkNMSLERFWRTVLVNCEALTREVLPaaseaaGRSIGGTFVVVDLAGFGISQFW-QMKDFARSSFQVSQD 187
                 5789******************99999777666688***************88888999999****************99887.449999********* PP

   CRAL_TRIO  95 nyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                 ++pe++ ++ ivnaP  f+++++++kp+l ++t  K+ ++ +s+ ++ l + id++ lp++lGG+
  CDO71436.1 188 YFPETMAQLAIVNAPMGFSAIWNVMKPWLAKETVAKVAIY-GSDYRKHLLELIDEDALPQSLGGK 251
                 ****************************************.668889*****************6 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   1.2e-09   7.2e-06       2      54 .]      10      56 ..       9      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.2e-09
  CRAL_TRIO_N  2 ydellahlqeseyklteeekfWltre..dhddaclLRfLRArkwdvekAikrLed 54
                 ++e+++ l ++++  ++        +   +dd +lLRfLRAr +++++   ++++
   CDO71436.1 10 LKEFRETLVNQDLL-HDG-------DtiGTDDDTLLRFLRARHFNLKQSTLMWKN 56
                 68888999888886.444.......14457888****************999986 PP

>> Herpes_BLLF1  Herpes virus major outer envelope glycoprotein (BLLF1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.7   0.00016      0.97     501     583 ..     321     404 ..     310     414 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00016
  Herpes_BLLF1 501 skapdmtsptsavttptpnatsptpavttptpnat..sptlgktsptsavttptpnatsptpavttptpnatiptlgktsptsav 583
                   s++pd     s    p p+   p+    t tp ++  sp  g ts ts+++tp+ +a+ p p     + +a+i  + +  p + v
    CDO71436.1 321 SRSPDAEQLPS-SEEPRPEVEQPSGDAPTDTPSSSdpSPESGSTSETSSIATPASDASHPEPVERPRSKEASIQEVYQQHPETRV 404
                   66666554333.24577777777766666666544228889*********************98888899999988887776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2860.24
//
Query:       CDO71437.1  [L=489]
Description: Glycoside Hydrolase Family 71 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     5e-110  367.8   0.4   5.8e-110  367.6   0.4    1.0  1  Glyco_hydro_71  Glycosyl hydrolase family 71


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.6   0.4  3.2e-114  5.8e-110       1     374 [.      31     458 ..      31     459 .. 0.95

  Alignments for each domain:
  == domain 1  score: 367.6 bits;  conditional E-value: 3.2e-114
  Glyco_hydro_71   1 VfaHfmvgnt.e....nytasdwekDiklAkaagiDgFaLNigskdswtaeqladayeaAeavg..fkLflSfDmava.gawpk......sevis 81 
                     V+aH++vg t       +t ++w++Di lA++ giDgFaLN+g  d++t +q+  ay+aAe++g  fkLflS+Dma+  g++++      + +++
      CDO71437.1  31 VVAHHIVGLTgGggsgDFTLDTWKNDIGLASSKGIDGFALNVGA-DDFTYAQVGLAYQAAEELGggFKLFLSLDMAAIgGQMNCnspdtaTWLRN 124
                     89*****998533333589************************7.******************888**********95699999999998999** PP

  Glyco_hydro_71  82 likkyashpaqlkvngkplvSTFeGeknaedwasiksal..........teeiffvPdfsslgaaaaaekaldvvDGlfsWea.Wpkgatn.... 161
                     l +++ ++++ql+v+gk+lvSTF+Ge+++++ +++ +++            +i+fvP+f+ ++ ++++++ ++++DG f+++  W ++ t+    
      CDO71437.1 125 LTTTFITKTNQLMVDGKALVSTFAGESCTFGEQDVPTGWrvhftqhpdiAGNIHFVPAFF-VDIQQFKNY-AGIMDGDFNFNGaWRTDFTTatas 217
                     ********************************************9999856*********.999***995.9**********99***998889** PP

  Glyco_hydro_71 162 ........................mstetDeaylsalkg.....kpYmmpvSpwffthlgkesynknwvwrgd.dlwakRweqvlelqp..dfve 224
                                              s + D+ ++++l++     ++Ym++v+pwffth+g+++ynkn+++ +d +l+ +Rwe+++++++  ++v+
      CDO71437.1 218 sflgsdgsldnptpeqqgiiaqtlGSFQIDQWHVEQLAQvanssHTYMTSVAPWFFTHFGPDTYNKNFIYDCDdHLYIRRWETLIANRDkvHIVQ 312
                     ************************99999*999999955666779****************************9*************99899*** PP

  Glyco_hydro_71 225 iitWNDygEShYigplkekkaqdgsskyvegmpHdgwrdllkyyiaayKtgskkpaitedklvlwyRphpkkakcssgdttgnpanaelleDkvf 319
                     i+tWND+gEShYigp+++ + ++gs++++ g++H+g++d+++y+++++K+g++ p+it+d+l +w+Rphpk+a++ ++d++  p+n+el++D+++
      CDO71437.1 313 ILTWNDFGESHYIGPIQG-NLPPGSESWTAGLDHEGFLDITSYFARWFKSGQR-PSITQDQLLMWARPHPKHAQA-TNDPLPPPTNYELTQDQLW 404
                     *****************9.9*******************************87.*******************99.88***************** PP

  Glyco_hydro_71 320 vvallkspatvtvsvggkesetfsvkaGvnklsvpfngetGk.vkvsvvrngktva 374
                     +v+l+++p +v++ + ++++++f v++Gvn +++++  ++G  ++ ++ r+g+tv+
      CDO71437.1 405 AVVLATAPGKVSLATADNATAKFAVSEGVNLVNMSL--TPGGyMRGTLERHGRTVV 458
                     ************************************..77666**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3440.02
//
Query:       CDO71438.1  [L=548]
Description: Glycoside Hydrolase Family 71 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-114  382.4   4.1   2.4e-114  382.1   4.1    1.1  1  Glyco_hydro_71  Glycosyl hydrolase family 71


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.1   4.1  1.3e-118  2.4e-114       1     374 [.      35     457 ..      35     458 .. 0.95

  Alignments for each domain:
  == domain 1  score: 382.1 bits;  conditional E-value: 1.3e-118
  Glyco_hydro_71   1 VfaHfmvgntenytasdwekDiklAkaagiDgFaLNigskdswtaeqladayeaAeavg..fkLflSfDmava.gawpk......sevislikky 86 
                     V+aH++vgnt+ +t ++w++D++lA++ giDgFaLNi+  d++t +q+  ay+aA+a++  fk+flS+Dm +  +++++      + v+++ +++
      CDO71438.1  35 VVAHHIVGNTAGFTLDNWTQDVTLASSKGIDGFALNIAA-DDFTFQQVGFAYQAAAAANpnFKVFLSLDMDALnNQINCnttdagAFVRNVTSTF 128
                     89************************************7.****************99888**********8567888899999999******** PP

  Glyco_hydro_71  87 ashpaqlkvngkplvSTFeGeknaedwasiksal..........teeiffvPdfsslgaaaaaekaldvvDGlfsWea.Wpkgatn......... 161
                      ++paql+++gk++vSTF+Ge+++ + a++ +++            +i+fvP+f+ ++ +++++ +++v+DG f+++  Wp++ t+         
      CDO71438.1 129 LTQPAQLQIDGKAFVSTFAGESCTLGGADVFTGWnteftqhpdlAGKIHFVPSFF-IDIQQFKN-FKGVMDGDFNFNGgWPIDLTTkaapqilgg 221
                     *************************9999999999999999988569********.9*9***99.7******************888******** PP

  Glyco_hydro_71 162 ...................mstetDeaylsalkg......kpYmmpvSpwffthlgkesynknwvwrgd.dlwakRweqvlelqp..dfveiitW 228
                                         s + D++++++l g      ++Ym++v+pwffth+++ + nkn+++ +d +l+ +Rw++v+++++  dfve++tW
      CDO71438.1 222 tpdfnnlspnqqaiiasqiGSFDLDDEHITQL-GlvadsaHTYMTAVAPWFFTHFDQAHGNKNFIFDADdHLYVTRWQNVIQNRDkvDFVELVTW 315
                     *******************9************.33556679***************************99*************9999******** PP

  Glyco_hydro_71 229 NDygEShYigplkekkaqdgsskyvegmpHdgwrdllkyyiaayKtgskkpaitedklvlwyRphpkkakcssgdttgnpanaelleDkvfvval 323
                     ND+gEShY+gp+++ + ++gs+ +++g++H+g+++++++++++yKtg++ p it+d+lv+w+Rphpk+ak+ s+d++  p+n+el++D++++v+l
      CDO71438.1 316 NDFGESHYLGPIEG-NLPPGSEVWTNGFDHQGFLEITNHFATWYKTGAE-PPITTDQLVMWARPHPKNAKA-SSDPLPPPTNFELTQDQLWAVVL 407
                     *************9.9*******************************87.*******************99.779******************** PP

  Glyco_hydro_71 324 lkspatvtvsvggkesetfsvkaGvnklsvpfngetGk.vkvsvvrngktva 374
                     +++pa++t+ +g+++++tf+v+ Gvnk+++++  ++G  ++ +++rn+  v+
      CDO71438.1 408 ATAPASLTLATGDNATQTFDVQPGVNKFNMSL--TPGGfMQGTLTRNNVAVI 457
                     ********************************..77777********98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.50
# Mc/sec: 3319.35
//
Query:       CDO71439.1  [L=215]
Description: hypothetical protein BN946_scf184909.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-24   85.4   0.0    1.6e-13   51.1   0.0    2.3  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0     7e-12   1.3e-07      11      76 .]      44     109 ..      38     109 .. 0.78
   2 !   51.1   0.0     9e-18   1.6e-13       2      74 ..     118     201 ..     117     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 7e-12
                   T.TTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEEC.SESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  11 g.gqlvlvlGpkgeltreipegvtvevkvegnkvtvivv.sgidkekvAligtvrslinnmikGVteg 76 
                     +  v+v+Gp ge ++++ + + +  ++  n++ v+v     +k+++ ++g++r+li+n i G teg
    CDO71439.1  44 PtSTAVSVKGPLGETSVPLMPFMRIS-ETAPNTLAVAVEnAKERKQRA-MWGLTRTLIENAIIGMTEG 109
                   446789*******************9.555566666555344556665.***************9998 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 9e-18
                   STTEEEEEET...........TTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHH CS
  Ribosomal_L6   2 Pvgvrvsikg...........gqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVt 74 
                   +vg+r+ ++            ++l++ lG+++++ +++p+ +++ev+    ++t+iv+s +dk+k     A+i+  r+++++++kGV 
    CDO71439.1 118 GVGYRAALEAdprgkgegrsgQRLNMKLGFSHSVFVSVPDHIKIEVP----QPTKIVLSCTDKHKLglfaAQIRRLRPPEPYKGKGVI 201
                   66666666666666666677799************************....9**********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1624.13
//
Query:       CDO71440.1  [L=402]
Description: hypothetical protein BN946_scf184909.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-29  100.2   0.0    9.5e-29   99.4   0.0    1.5  1  tRNA_bind        Putative tRNA binding domain
    8.1e-05   22.8   0.0    8.1e-05   22.8   0.0    2.4  2  GST_C            Glutathione S-transferase, C-terminal domain
    0.00032   20.8   0.0    0.00032   20.8   0.0    2.0  2  GST_C_3          Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.034   14.2   0.0    1.5  1  GST_C_2          Glutathione S-transferase, C-terminal domain
        0.1   11.3   4.9       0.13   11.0   4.9    1.1  1  Presenilin       Presenilin
       0.12   12.3  13.1       0.19   11.7  13.1    1.3  1  SRP-alpha_N      Signal recognition particle, alpha subunit, 
       0.57    9.3   2.7       0.67    9.1   2.7    1.2  1  Zip              ZIP Zinc transporter
        1.4    7.6   3.9        1.7    7.3   3.9    1.1  1  SAPS             SIT4 phosphatase-associated protein
        1.7    8.5  18.4        2.9    7.8  18.4    1.3  1  Spore_coat_CotO  Spore coat protein CotO
        1.8    7.4  19.2        2.7    6.8  19.2    1.2  1  NARP1            NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   5.3e-32   9.5e-29       1      95 [.     236     333 ..     236     334 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 5.3e-32
                 EEEEEEEEEEEETTSSTEEEEEEEESSSS.EEEEEESCTTTSTHHHHTTEEEEEETTSESEEETTEEESSEE-EEEC..CESSCEEEEEESST--TTC CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeee.prqivsgaknvyepeelvakkvvvvanlkpkklrGveSeGMilsaee..ldekevgilelpadveaGe 95 
                 lrvG+++++++hp+ad+L+v+++d+Gee+ pr++vsg++n+ + ee+++k++v v+nlkp+++rG++S +M+l+a +  +++k  +++++pa +++G+
  CDO71440.1 236 LRVGRIVDVKKHPDADSLYVEQIDFGEETgPRTVVSGLVNYIPIEEMQNKILVGVCNLKPANMRGIKSFAMVLAATHkdGKDKGIELVQPPAGSKPGD 333
                 79**************************************************************************97777788999*********97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.5e-08   8.1e-05      33      93 .]      55     115 ..      23     115 .. 0.91
   2 ?   -5.1   4.6        10   1.8e+04      11      11 ..     193     193 ..     139     223 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH.HHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  33 evlsaleeelkkqdylvGdkltlADialvpiln.wlqrlglafgqekfpnlkawlerimarp 93 
                 e ++ le++l  ++ylv + +t AD+al+ +l     +l++a     +p++++++++i ++p
  CDO71440.1  55 EKFQDLEATLVPRTYLVSNYFTAADVALYGALHpTISQLQPAQY-YSHPAITRYFDHIQHHP 115
                 78999****************************99999999999.************98877 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 10
                 H CS
       GST_C  11 l 11 
                 +
  CDO71440.1 193 A 193
                 1 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.8e-07   0.00032      23      94 ..      47     119 ..      24     123 .. 0.82
   2 ?   -5.1   3.5        10   1.8e+04      30      30 ..     191     191 ..     150     220 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH..TCC.CC-HHHHHHHHHHHTSHHHHH CS
     GST_C_3  23 efleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea..eal.kkfpklkalyervearpkika 94 
                 +f +   p+ ++ +e  l     +ylv + +T AD+al+ +l+ + ++   a+  ++p ++++ ++++ +p++ +
  CDO71440.1  47 AFGDVARPEKFQDLEATLV--PRTYLVSNYFTAADVALYGALHPTISQlqPAQyYSHPAITRYFDHIQHHPSVRK 119
                 5556667899999999999..889*******************99999863335788**************9976 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 10
                 H CS
     GST_C_3  30 p 30 
                 p
  CDO71440.1 191 P 191
                 1 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.9e-05     0.034      14      47 ..      56      89 ..      54     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
                CHHHCTTT---SS.CTTCS--HHHHHHHHHHHHH CS
     GST_C_2 14 aldaleahLadspflfGdqptlaDialapflvrl 47
                ++  lea L  +++l  + +t+aD+al++ l+ +
  CDO71440.1 56 KFQDLEATLVPRTYLVSNYFTAADVALYGALHPT 89
                677799*****9****************988866 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.9   7.1e-05      0.13     232     310 ..     143     220 ..     121     292 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.1e-05
  Presenilin 232 vaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeee 310
                 +++++ ++++++k++ ++e+++ e + ++++ k ++++ ++++++e++++++++ e++ +++++e+++++++e + +++
  CDO71440.1 143 RKADAPKKKEKSKAAPDAEKEAPEPKANKAAAKADKKA-KKADTTEAAAPKAEKVEKEGKTQKTEKKEKKAKEPKAAQN 220
                 11111222222222222222222222222222211111.2222222222222222222222222222222222221111 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  13.1    0.0001      0.19     102     235 ..     136     217 ..     101     261 .. 0.43

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                  XXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX...........XXXXXXX...XXXXXXXXXXXXXXXXX.XXX.XXXXXXXXXXXXX CS
  SRP-alpha_N 102 Easaeaakkskaakepkamksfeeskkskktvksskedkkpegkkkkgakkekdasddstpsatpetsrpstpsglltakeagptaedvsrrarkkan 199
                  E++  +++k             ++ kk++k++++  ++k+                                     ++k a+++a++ +++a+k+  
   CDO71440.1 136 ENAPHQERK------------ADAPKKKEKSKAAPDAEKE-----------------------------------APEPK-ANKAAAKADKKAKKADT 185
                  333222211............1111111111111111111...................................11111.22223333333333322 PP

                  X..XXXXXXXXXXX....XXXXXXX...XXXXXXXXX CS
  SRP-alpha_N 200 kkrssagassgdeakasksskkkkk.kpkkkgkkaRv 235
                  +++ +  a ++++ +  k++k++k+ k++kk+k+ + 
   CDO71440.1 186 TEA-A--APKAEKVE--KEGKTQKTeKKEKKAKEPKA 217
                  111.1..11111111..11111111011111221111 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.7   0.00038      0.67     105     169 ..     159     223 ..     109     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00038
         Zip 105 shkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeq 169
                 +++++ p+++ ++ +++a+kk  ++d++e    k ++v+++++++++++++++ k++k  +++ +
  CDO71440.1 159 DAEKEAPEPKANKAAAKADKKAKKADTTEAAAPKAEKVEKEGKTQKTEKKEKKAKEPKAAQNADK 223
                 34445555555555555555655666665555555555555555555555555555444444444 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.9   0.00096       1.7     262     342 ..     151     225 ..      51     240 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00096
        SAPS 262 tseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaeeteekl 342
                 +++++a  d ++ea+++++++++ ++dk+++ +  ++++       +++++ +++ ++++ ++++++++e+  a++ +++ 
  CDO71440.1 151 KEKSKAAPDAEKEAPEPKANKAAAKADKKAKKADTTEAA------APKAEKVEKEGKTQKTEKKEKKAKEPKAAQNADKAE 225
                 222333333333333333333322222222222222222......222222222222222222222222222333333333 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  18.4    0.0016       2.9      32     106 ..     149     225 ..     119     250 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
  Spore_coat_CotO  32 fkeekkqaaakekk..deaeekkpekaveeeveqekkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqetveae 106
                      +k+ek++aa+  +k  +e++ +k + +++++ ++ + +eaa P+ +++e++ + ++ +++e++++e+++ q+ ++ae
       CDO71440.1 149 KKKEKSKAAPDAEKeaPEPKANKAAAKADKKAKKADTTEAAAPKAEKVEKEGKTQKTEKKEKKAKEPKAAQNADKAE 225
                      45566555555444014555556666666679999999*****9999998888888888888999999999988763 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  19.2    0.0015       2.7     360     462 ..     105     218 ..      99     232 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
                 HHHHCTTT-SHHHHHHHHHHHHHH....HHHHH-TTGGG---H...HHHHT-S-HHHHH....HHHHHHHHHHHHHHHHHHHHHHHH--.......--- CS
       NARP1 360 lrledelrshpfyvkaakgaievY....lkledkpkakeeeke...eaksaelseaerk....klrkkakkaekkaekeeaekaekekekkaaekkakk 447
                  r+ d++++hp  +k a++   ++    l+le+ p+++++++    ++ks++  +ae++    k++k a ka+kka+k++ ++a++ k++k +++ +++
  CDO71440.1 105 TRYFDHIQHHPSVRKTAESLAPAFsvvqLDLENAPHQERKADApkkKEKSKAAPDAEKEapepKANKAAAKADKKAKKADTTEAAAPKAEKVEKEGKTQ 203
                 588899999999999998744433222278888886665554422133333333333331111444444444444444444444444444433334444 PP

                 ----------S-SSS CS
       NARP1 448 edeeakkededplge 462
                 + e+++k++++p + 
  CDO71440.1 204 KTEKKEKKAKEPKAA 218
                 444445555566544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1956  (0.109097); expected 358.6 (0.02)
Passed bias filter:                      818  (0.0456244); expected 358.6 (0.02)
Passed Vit filter:                       189  (0.0105416); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 2673.23
//
Query:       CDO71441.1  [L=352]
Description: hypothetical protein BN946_scf184909.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-25   90.5   0.0    1.8e-25   90.0   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    2.5e-08   34.3   0.0    7.8e-08   32.7   0.0    1.9  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0     2e-29   1.8e-25       1     117 [.      14     133 ..      14     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2e-29
      DIOX_N   1 iPvidlspl..sddedraavaeqlreAcrevGffyvvnh.gvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdgkkldwkesfd 94 
                 +Pvi ++p+   d   r ++a++l++Ac+e+Gffy+     +++++ +el ++areFFalP++eK+++  a+++s rGy+rl+e+ t+g k d +e++d
  CDO71441.1  14 LPVISIEPFlhPDGHGRLSTAAALHSACSEYGFFYLDISsYIDPAEPEELTRLAREFFALPQDEKDRIsiAHEDSARGYQRLEENVTNG-KADNHEAID 111
                 7********84444889*******************66527***************************999999**************9.********* PP

      DIOX_N  95 lgtelpeddpagkplegpnqwPe 117
                 +++++++ d +++p++g nqwP+
  CDO71441.1 112 FYRPVENPD-KRRPIWGENQWPT 133
                 ****76544.7789********6 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.87   7.8e+03      27      36 ..      77      86 ..      60     122 .. 0.68
   2 !   32.7   0.0   8.6e-12   7.8e-08      43      98 ..     238     290 ..     189     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.87
                  ESSSEEEEEE CS
  2OG-FeII_Oxy 27 daslltillq 36
                  ++  ++i + 
    CDO71441.1 77 EKDRISIAHE 86
                  3334444444 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 8.6e-12
                   -EEEETE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEEE CS
  2OG-FeII_Oxy  43 evfkdgk.wlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiayf 98 
                   ev +dg+ w++ +p  ++++ niG +++++sng yks+lHrV    +g+  + i +f
    CDO71441.1 238 EV-EDGGhWINADPKRGCVVCNIGEMWEVWSNGIYKSTLHRVI--HKGS-DYRIPFF 290
                   44.55666**********************************5..5544.3445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2361.95
//
Query:       CDO71442.1  [L=134]
Description: hypothetical protein BN946_scf184909.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-08   32.8   0.0    8.2e-08   32.4   0.0    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.043   13.3   0.0    1.1  1  DUF1849        Domain of unknown function (DUF1849)
       0.16   11.0   2.1       0.24   10.4   2.1    1.2  1  Pes-10         Pes-10


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.4e-11   8.2e-08       2      61 ..      74     133 ..      73     134 .] 0.91

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.4e-11
                    XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehi 61 
                     LP+  v+ I+      + ++k+A ++++ ++eef+++la+++++ ++ e+r  +++ ++
     CDO71442.1  74 LLPQDKVENILDAEGAGAHMSKEAVFMLSIATEEFVKKLAEAGYKQTTSENRQHVQYRDL 133
                    599999****998844444**************************************997 PP

>> DUF1849  Domain of unknown function (DUF1849)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-06     0.043     110     180 ..      55     126 ..      24     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-06
                 EEEEEE.SS-EEEEEE-.-B-HHHHHHHHHHHHHTT--EEEEEE----TTS---EEEEEEE---B----H.. CS
     DUF1849 110 kvrlkk.peaktlelpagtlFPtehtlaiieaAkaGeklleakvFDGsedgekvyetsavigkpkkaaaaae 180
                 +++ +k  ++  +++p++tl+P  ++++i++a  aG ++ +  vF  s + e+ ++ +a  g +++++++++
  CDO71442.1  55 NASTAKgRRRLGVRVPGHTLLPQDKVENILDAEGAGAHMSKEAVFMLSIATEEFVKKLAEAGYKQTTSENRQ 126
                 444443034457899******************************999999999999999998888877765 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.1     4e-05      0.24     195     226 ..      26      57 ..      20      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4e-05
      Pes-10 195 deedesssstdsgiesedeElveereeeeeee 226
                 + +de++++ dsg+e++ eE+++e e+e + +
  CDO71442.1  26 EVDDEEIDQLDSGLEDNGEEMEPESEDEGNAS 57 
                 578999*****************999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 992.27
//
Query:       CDO71443.1  [L=187]
Description: hypothetical protein BN946_scf184909.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-16   57.9   0.2    1.2e-09   38.3   0.0    2.1  2  HSP20       Hsp20/alpha crystallin family
    2.3e-12   46.2   0.0    3.6e-12   45.7   0.0    1.3  1  ArsA_HSP20  HSP20-like domain found in ArsA
     0.0014   18.7   1.9      0.014   15.4   0.0    2.0  2  GvpH        GvpH
     0.0092   16.1   0.2        6.1    7.0   0.1    2.2  2  FKBP26_C    FKBP26_C-terminal
  ------ inclusion threshold ------
      0.017   15.4   0.0      0.025   14.9   0.0    1.4  1  PilZ        PilZ domain


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   5.4e-07    0.0019       2      39 ..      56      95 ..      55     115 .. 0.79
   2 !   38.3   0.0   3.3e-13   1.2e-09      44      91 ..     129     179 ..     112     187 .] 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.4e-07
                --SSEEEEEEEEE-TT--CCCEEEEEETTE..EEEEEE-- CS
       HSP20  2 ikeeeeefevkldvpglkkeelkvkvednr..vlvkgehe 39
                + e+ +++ v++++pg+kke+++v + d+   ++++g+  
  CDO71443.1 56 VSEQGDKYVVEAELPGVKKENVNVRIGDGGrtLTIEGKVV 95
                67899********************988544499999976 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 3.3e-13
                 -TT----SS...---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS-- CS
       HSP20  44 dekgliker...ssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepe 91 
                 +++ l++er    s +F+r++ LP+ vd +kv+a+l+dGvLtvtvpk e  
  CDO71443.1 129 ESTALSTERlftGSASFTRTVVLPQPVDSSKVTAKLQDGVLTVTVPKAEDV 179
                 4445555541113679*******************************9876 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   9.9e-16   3.6e-12       1      62 [.      60     172 ..      60     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 9.9e-16
  ArsA_HSP20   1 ddeyvlkldLPfvdkeeidlsrs..gdeLtIkig..................................................nfrRqitLPsvlark 47 
                 +d+yv+ ++LP+v+ke++++++   g +LtI+ +                                                  +f R+++LP+ ++  
  CDO71443.1  60 GDKYVVEAELPGVKKENVNVRIGdgGRTLTIEGKvvrseprtaeassssaagsaegasegtqaltqkqpestalsterlftgsaSFTRTVVLPQPVDSS 158
                 589******************9888************************************************************************** PP

  ArsA_HSP20  48 evtsAkfedgvLeIr 62 
                 +v  Ak++dgvL+++
  CDO71443.1 159 KV-TAKLQDGVLTVT 172
                 **.**********97 PP

>> GvpH  GvpH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     4e-06     0.014      97     136 ..      57      94 ..      53      98 .. 0.80
   2 ?    2.4   0.6      0.04   1.4e+02      62     132 ..     105     173 ..      99     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4e-06
        GvpH  97 sddsdelvvvadlpGvtdedvdvaletdeqaltlrvdddv 136
                 s+++d+ vv a+lpGv  e+v+v +    +  tl+++  v
  CDO71443.1  57 SEQGDKYVVEAELPGVKKENVNVRIGD--GGRTLTIEGKV 94 
                 789*********************994..44455555555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.04
        GvpH  62 ssstdeenaddasdaeqrsgqqrttedsihvetrasddsdelvvvadlpGvtded.vdvaletdeqaltlrv 132
                 sss  +++a+ as+  q    q+  e ++    r  + s  +     lp   d + v + l+  ++ lt++v
  CDO71443.1 105 SSSSAAGSAEGASEGTQAL-TQKQPESTALSTERLFTGSASFTRTVVLPQPVDSSkVTAKLQ--DGVLTVTV 173
                 5666778888888887554.455666676666677777777777777888777776888887..67777776 PP

>> FKBP26_C  FKBP26_C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0018       6.5       6      32 ..      62      88 ..      61      94 .. 0.84
   2 !    7.0   0.1    0.0017       6.1      15      37 ..     154     176 ..     148     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0018
                HHHHHHH-TT--..--EEEEETTEEEE CS
    FKBP26_C  6 kelIkryiPnidlekfkieiedktvtI 32
                k++++  +P +++e++++ i d+  t 
  CDO71443.1 62 KYVVEAELPGVKKENVNVRIGDGGRTL 88
                799******************875444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
                 T--..--EEEEETTEEEEE--TT CS
    FKBP26_C  15 nidlekfkieiedktvtIelpee 37 
                  +d+ k+  +++d+++t+++p+ 
  CDO71443.1 154 PVDSSKVTAKLQDGVLTVTVPKA 176
                 58999****************85 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   6.9e-06     0.025      28      77 ..      52     101 ..       4     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.9e-06
                 EEEEEESSEEEEEES.T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTC CS
        PilZ  28 rliDiSlgGlairlp.deelalgdrvelklpldkdqelslpgrVvrvkpee 77 
                   +D+S+ G + +++ + +  ++++v++++  d++ +l+++g+Vvr +p++
  CDO71443.1  52 PAVDVSEQGDKYVVEaELPGVKKENVNVRIG-DGGRTLTIEGKVVRSEPRT 101
                 569******8888886688888888999999.****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1270.95
//
Query:       CDO71444.1  [L=260]
Description: hypothetical protein BN946_scf184909.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-33  114.2   0.0    6.3e-33  113.7   0.0    1.2  1  DUF1325   SGF29 tudor-like domain


Domain annotation for each model (and alignments):
>> DUF1325  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   3.5e-37   6.3e-33       2     114 ..     128     254 ..     127     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 3.5e-37
     DUF1325   2 geeVaa....kekk.....kekeeeeewilaeVvk.iegkknrYeveDadpde.ekekkkyklsaksiiplpkskakpesk.....laefpkgkkVLAl 84 
                 g++Va+    +        ++  ++eewila+V+k i+++knrYev+D++p+e ++++++y+++++ iiplp+++a p+s+     ++ef +g++V+Al
  CDO71444.1 128 GRKVAFhpptN--AskadsAAGGKDEEWILAVVTKcINQDKNRYEVQDPEPQEdGQPGQRYNTTLRAIIPLPDPNAPPDSAahlnaYPEFVAGSTVMAL 224
                 899***76552..1445667889999*************************9998999******************99988899999************ PP

     DUF1325  85 YPeTTtFYkAeVvaspkkkekeyklkFedd 114
                 YP+T++FY+AeV+asp++ ++  ++ F ++
  CDO71444.1 225 YPDTSCFYRAEVIASPRDLNPGGRVSFGGQ 254
                 ****************99999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1861.20
//
Query:       CDO71445.1  [L=1956]
Description: hypothetical protein BN946_scf184909.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.5e-150  501.7   5.2   5.7e-150  501.0   5.2    1.3  1  SEN1_N           SEN1 N terminal
    1.2e-71  241.6   1.0    5.7e-71  239.4   0.8    2.4  2  AAA_11           AAA domain
    1.1e-60  204.7   0.0    3.2e-60  203.2   0.0    1.9  2  AAA_12           AAA domain
    2.5e-10   40.4   0.0    3.2e-06   27.0   0.0    2.7  2  AAA_30           AAA domain
      3e-09   37.4   0.7    2.3e-08   34.5   0.7    2.3  1  AAA_19           AAA domain
    2.1e-05   24.4   0.2      0.011   15.5   0.1    3.3  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00073   19.0   7.8     0.0021   17.5   7.8    1.7  1  DUF3552          Domain of unknown function (DUF3552)
  ------ inclusion threshold ------
      0.033   14.2   0.0       0.18   11.8   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
       0.18   12.1   1.3        1.2    9.4   0.5    2.8  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> SEN1_N  SEN1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.0   5.2  2.8e-153  5.7e-150       1     751 [.      88     838 ..      88     839 .. 0.89

  Alignments for each domain:
  == domain 1  score: 501.0 bits;  conditional E-value: 2.8e-153
      SEN1_N   1 lkerleasLssCdkCvrafhrakkklrqrllerfpeekvaqffdildeweierilkgLekakellekrgivksssleaslaevllalyeaLccppllrs 99 
                 ++++l++++++C+ Cvr+ h+    +r++++ +f +++++ f+d ++++ ++++ + L + k  ++ + +   +s+ + +++ + a + +L   ++l +
  CDO71445.1  88 WRQQLKRVITRCCYCVRGLHETETMSRHTYFGAFGDQVLKSFYDNFHKFLTDTAVDALAE-KGFISGNAT---NSERTLTDAPPGATFLILTYLHML-Q 181
                 99**********************************************************.555654444...3333346777799***********.* PP

      SEN1_N 100 dpelralfdkvfkslqskkkplklsellPGltyllfdgdeeerrWAekqlerlkrsptkeefewavsdaleeaiehllrlq...dpads.......... 185
                 dp++ +l+++ +++   +++p ++  ++++l++llfd+ +e r+WA+kq + ++ +p+++e +   ++++ +a  + + +       d           
  CDO71445.1 182 DPRIVTLLHSFCPRDPVRSWPNDI--PPAALLALLFDDVPEVRSWAQKQTTLCEIAPIPMENFLPAHSIVLKAVADCVASSrslR--DAfgveyrlsfl 276
                 ***********************9..***********************************************999999776441..336788889999 PP

      SEN1_N 186 .aierfWsglslilrlldkeliteslrgkevnlklesiyrlllnhlssrl.ee....plpdvlralslLLeklgkafWdalspitpqvvldqifdnpaF 278
                  +i+++Ws ++++lr+++ el+ +s +   + l   ++ +++++hl+++   +    ++ dvl+++ + L+++g+++W++++p++ +vv+++i+dn+ +
  CDO71445.1 277 tDISSLWSSFTTLLRFIPVELLRSSKS---FDL---DVRHIVIGHLHDTGnRQllplYFLDVLKCFVIVLRRMGPDVWQGEGPEYSHVVFNSIKDNTRY 369
                 **********************65554...444...************9644422225679************************************** PP

      SEN1_N 279 aklLaeseeseedseeddseesdllsWirpflrSl.spsqrseackkllnfllerlqkdrfstaarearaaclragltalletlltfkdeerslltsts 376
                 a +L +   +   +++d       l+Wi+ + +++ + +++ + + ++l+fl+e+lq++rf+   r+ ++ ++ ++l a+l+             ++++
  CDO71445.1 370 ADILCSLPAP--VPKDD--W---QLKWIEVYANTVgKLPAFKDILPSVLQFLCEELQHERFKS-VRPNAMSIASRLLFAVLS-----H-------QGKD 448
                 *******555..33333..3...7***********99************************66.99****************.....1.......1112 PP

      SEN1_N 377 akfvnellnvldlvlk.hadtivdvalktkpedkanselskaareviekalalDikslaeelekLsagkqe....ilqsgvlrr..sknlWkalykals 468
                    + ++l++ d+ l  h++++v+va++++ +++ +++++k+ r ++++al  Di+++a+++ +Ls+ ++     ++ +    +  ++ +Wk +y+ +s
  CDO71445.1 449 -AAWRQELAL-DM-LTvHSAVFVAVAISKTFSGEVWTDTRKQSRRLLKQALFSDIRNIATAITSLSSSATSpdqsSPVR----SliHERIWKDVYEGVS 540
                 .333344444.44.223******99996666799**********************************88655332222....2449************ PP

      SEN1_N 469 sgdldlakalLkalaplagleklkpkske.kkk......eldaakaafNkalkaireliarllerlsdfsspselkellsdpeaaqalisllfspddel 560
                 ++d+d  + lL +l+++ +l+ lkp + e   k        +a   a+N+al+ +r+ + ++l+r++d+s  s   ell ++++a+ +  l+fsp ++l
  CDO71445.1 541 ENDSDAVALLLAVLSQIWNLDDLKPVAFEeIIKrsssasASQAILVAVNTALAVLRNGFRDVLSRYTDLSLDSSAVELLGREDVAKHVALLMFSPVEAL 639
                 ***8888***************777766643336766767888899***************************************************** PP

      SEN1_N 561 yqaalnllkqafdvdsRldalralleknltatlraindalrqltklkt.....fepaprlvrvlmdildvLcdpsdGlLrsrsl...tseaeaaalkkl 651
                 ++aa+ l+  afdvd+Rld+lralle++++ t+ ++n+al++ t  ++     +++++ l r+l+d++++Lc++++GlL + ++    +e+ +++++k+
  CDO71445.1 640 QEAAQGLVALAFDVDGRLDCLRALLEHYPDGTFAGMNEALSTYTAIAKtvpeaCSLSQALARCLTDVIEALCSSPSGLLLDAAYikrAGETLQDRIPKW 738
                 **********************************************99**************************************98899******** PP

      SEN1_N 652 WelmwqfLdmiFkrtesWaekyekseMvefcRDtlefaeaLldqyrlfasalsgasead.steskseseagkkllkalakalkglvkWLRLrDeeLles 749
                 W++m+++L +iF  t++Wa+++e++eMv ++RD+l+f+++Ll+q r+++s + ++s++d ++ + + +++gkk++++l+++l +l+kWLRL+DeeLl++
  CDO71445.1 739 WQSMTEALCVIFAYTPRWARYFENEEMVLWMRDALIFGRDLLAQRRILESGAVARSQNDaKQ-NGKLTQVGKKMVDDLQQVLFELTKWLRLTDEELLHQ 836
                 **************************************************999888888554.478888****************************** PP

      SEN1_N 750 cv 751
                 ++
  CDO71445.1 837 SF 838
                 97 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   3.1e+03     190     214 ..    1190    1214 ..    1135    1218 .. 0.78
   2 !  239.4   0.8   2.8e-74   5.7e-71       2     261 .]    1300    1583 ..    1299    1583 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
      AAA_11  190 eevldeaeivltTlsgagskllekl 214 
                  +  l+e++ivl T+ ++++++l k+
  CDO71445.1 1190 DWNLSETDIVLFTNPSSKRRVLGKA 1214
                  445899*************999887 PP

  == domain 2  score: 239.4 bits;  conditional E-value: 2.8e-74
      AAA_11    2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsr........rk.seeeksakpriLvCapSNaAvDellerllrglldsegekykpk 89  
                  +n+ q++ai +al +++++liqGPPGtgKT+ti++l++  lsr        +    +e++ +++iL+CapSNaA+De++ rl +g+  +  + + pk
  CDO71445.1 1300 VNEPQANAILKALATEGFALIQGPPGTGKTSTICGLVQLYLSRrpkpsaviHPgRPAERELPKKILLCAPSNAAIDEIAFRLKEGVSGAGHRAEHPK 1396
                  79************************************9997666666665225678999************************************* PP

      AAA_11   90 ivRvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek..................eklkkskekskskleqerr 168 
                  +vR+g+++ +++ +v++vs+e+ ++++l+++++ q +ke   el+++++el+a +++ ++                  e++ k  + +k+ l+++++
  CDO71445.1 1397 VVRIGAPK-SMNLSVRDVSMEYLIDQKLNANPELQNSKEAGTELARVRSELEAVKRQRQQkleelsaiqdntaktlvlEEEVKRLNRQKAMLTHQLD 1492
                  ********.9**************************************9999999999889999*************9999999999999******* PP

      AAA_11  169 klkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvisk 261 
                  k+k+++k+  ++l+ ++++ ++evl+ea+i+++Tls ++ + le +  +f++viIDEAaqa+E+s+liP++++++ ++LvGDp+QLp+tv+s+
  CDO71445.1 1493 KVKDKQKSDYRTLDATRRRFRNEVLQEADIICSTLSASAYEYLEPF--DFELVIIDEAAQAIELSSLIPMKYRCRTCILVGDPQQLPPTVKSQ 1583
                  **********************************************..8******************************************95 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2         3     6e+03     111     132 ..    1457    1478 ..    1406    1528 .. 0.47
   2 !  203.2   0.0   1.6e-63   3.2e-60       1     197 [.    1590    1785 ..    1590    1787 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3
      AAA_12  111 rkkigvitpYraqvellkkklk 132 
                   +++  i    a+  +l++++k
  CDO71445.1 1457 LEELSAIQDNTAKTLVLEEEVK 1478
                  2222222222222222332222 PP

  == domain 2  score: 203.2 bits;  conditional E-value: 1.6e-63
      AAA_12    1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvk 97  
                  +++Slf rl+++++ +v+lL++qYRmhp+Is++ps+lfY+g+L+d++++++++++ +++++ ++  + f++v+  +ee++   +s++N++Ea++ v 
  CDO71445.1 1590 YDQSLFVRLQRSQPDAVHLLSIQYRMHPDISQLPSNLFYGGRLRDGPDMAEKTKR-IWHTHPKFGTYRFFNVQAGHEESSGG-HSLFNRAEAQVAVA 1684
                  89*****************************************************.*****************999999986.************** PP

      AAA_12   98 lvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn.ekkeigflkderrlNValTRAkskli 193 
                  l+++l+k++s++   k+gvi++Yr q+  l++++++++ ++  + ++ ntvdgfQG+ekd+iils+VR+    +++gfl+d rr+NValTRAk +l+
  CDO71445.1 1685 LYNRLTKEFSSNLDFKVGVISMYRGQIGELRRAFQQRFGDEVLSMVDFNTVDGFQGQEKDIIILSCVRAGpGVSSVGFLRDVRRMNVALTRAKASLF 1781
                  ************999**************************9999************************956677********************** PP

      AAA_12  194 ivGn 197 
                  ++G+
  CDO71445.1 1782 VLGH 1785
                  ***8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.6e-09   3.2e-06       2      64 ..    1300    1379 ..    1299    1399 .. 0.89
   2 !   10.4   0.0    0.0002      0.39      89     130 ..    1539    1578 ..    1446    1599 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.6e-09
      AAA_30    2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag..................grviglAptgkaAkvLae 64  
                  +n+ Qa+a+ ++l+++  +a+++Gp+GtGKt ++ +l++++ ++                   ++++++Ap+++a +++a 
  CDO71445.1 1300 VNEPQANAILKALATEG-FALIQGPPGTGKTSTICGLVQLYLSRRpkpsavihpgrpaerelpKKILLCAPSNAAIDEIAF 1379
                  6889*****99999996.***********************999669***************************9888775 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0002
      AAA_30   89 g.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlas 130 
                  + +l+i+DEa+ +   +l +l+    +   ++ilvGD++Ql++
  CDO71445.1 1539 DfELVIIDEAAQA--IELSSLIPMKYR-CRTCILVGDPQQLPP 1578
                  249*******876..444555444333.457**********98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.7   1.2e-11   2.3e-08       3     144 ..    1306    1579 ..    1304    1581 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.2e-11
      AAA_19    3 eav.e.alkekvllvtaGpGtGKTrvlkhivallvelggvkp..............eeillvaftgrAakelrerlaalgaeatTiHrlal...... 77  
                  +a+ +  ++e+  l+ ++pGtGKT ++ + v+l+++++  +               ++ill+a+ + A +e++ rl++  +     Hr         
  CDO71445.1 1306 NAIlKaLATEGFALIQGPPGTGKTSTICGLVQLYLSRRPKPSavihpgrpaerelpKKILLCAPSNAAIDEIAFRLKE--GVSGAGHRAEHpkvvri 1400
                  5554556889999***********************997766999**************************9999933..22333344433555666 PP

      AAA_19   78 ................................................................................................. 77  
                                                                                                                   
  CDO71445.1 1401 gapksmnlsvrdvsmeylidqklnanpelqnskeagtelarvrseleavkrqrqqkleelsaiqdntaktlvleeevkrlnrqkamlthqldkvkdk 1497
                  6677777777888888888888888888888888888888888888999999999999999999999999999999999999999999999889888 PP

      AAA_19   78 ...................ldfddlltealelle......eaeeekklqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144 
                                     l+  d++                e  +++ + el+i+DE+ +  el  +L+   + +  + +lvGDp+Ql++ 
  CDO71445.1 1498 qksdyrtldatrrrfrnevLQEADII-------CstlsasAYEYLEPF-DFELVIIDEAAQAIEL-SSLIPMKY-RCRTCILVGDPQQLPPT 1579
                  88888887777766666654444444.......044434333445566.666******9877655.45666655.33448*********975 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.14   2.8e+02       2      21 ..    1319    1338 ..    1318    1363 .. 0.76
   2 !   15.5   0.1   5.4e-06     0.011      58     109 ..    1535    1585 ..    1486    1609 .. 0.72
   3 ?    3.4   0.0     0.027        54     183     232 ..    1725    1782 ..    1672    1784 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.14
  Viral_helicase1    2 vvhGvpGcGKStlirkllrt 21  
                       +++G pG GK++ i  l++ 
       CDO71445.1 1319 LIQGPPGTGKTSTICGLVQL 1338
                       699*********99888877 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.4e-06
  Viral_helicase1   58 vkstkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasf 109 
                       +++ +++++i+DE+ ++   ++   +  +++++++il+GDp+Q p   +++++
       CDO71445.1 1535 LEPFDFELVIIDEAAQAI--ELSSlIPMKYRCRTCILVGDPQQLPPTVKSQEA 1585
                       3445799*******8876..56665999***************9987666655 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.027
  Viral_helicase1  183 r.....evttvhevqGltfdkVtlvllketdlelis.....esrenllvAlTRhrkslvi 232 
                       +     +++tv + qG++ d  +l + +  +    s     ++   + vAlTR++ sl +
       CDO71445.1 1725 EvlsmvDFNTVDGFQGQEKDIIILSCVRAGPGV--SsvgflRDVRRMNVALTRAKASLFV 1782
                       244444599*********999999887766644..2357887789999*******99976 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   7.8     1e-06    0.0021     116     176 ..    1433    1493 ..    1408    1504 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
     DUF3552  116 kqkeqsleekeeeleelveeqrqeLerisgLtkeeAkeilleeveeelkheaAkmikeiee 176 
                  k+  ++l + ++ele+++++++q+Le++s ++ + Ak ++lee  ++l+++ A++ ++ ++
  CDO71445.1 1433 KEAGTELARVRSELEAVKRQRQQKLEELSAIQDNTAKTLVLEEEVKRLNRQKAMLTHQLDK 1493
                  4566889999*********************************************999865 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       7.7   1.5e+04      57      96 ..     116     158 ..     109     164 .. 0.71
   2 ?   11.8   0.0   8.9e-05      0.18       3      65 ..    1299    1372 ..    1297    1556 .. 0.73

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 7.7
                 EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B-- CS
      ResIII  57 flflvprkslleqtleefkkflseayke...igkkvsgdkkka 96 
                 + f + + ++l+  +++f kfl +++ +   +++++sg+  ++
  CDO71445.1 116 TYFGAFGDQVLKSFYDNFHKFLTDTAVDalaEKGFISGNATNS 158
                 5566667788888899999999888766776666677766555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.9e-05
                  EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....................-EEEEESSHH CS
      ResIII    3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee................kflflvprks 65  
                  +++e Q++ai + l       +  +li+ + GtGKT +++ l++ +l+ +++                 k+l+ +p+++
  CDO71445.1 1299 KVNEPQANAILKAL-----ATEGFALIQGPPGTGKTSTICGLVQLYLSRRPKPsavihpgrpaerelpkKILLCAPSNA 1372
                  56677777777776.....578899**********************99887777777777777777777777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00062       1.2       4      38 ..    1314    1359 ..    1311    1502 .. 0.64
   2 ?   -1.1   0.3       1.1   2.2e+03      52     101 ..    1508    1549 ..    1446    1557 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00062
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaee...........e 38  
                  t+g+ ++ G++GtGKT ++  l++ +  +                e
  CDO71445.1 1314 TEGFALIQGPPGTGKTSTICGLVQLYLSRRPKPSavihpgrpaerE 1359
                  689*************998777776644322222455555555551 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
      AAA_22   52 sskdllrellralglelkaerlsseellealeqalraravielliiDEaq 101 
                  +++ +++e+l++ +  +++       l +  +++l+  +  el+iiDEa 
  CDO71445.1 1508 TRRRFRNEVLQEADIICST-------LSASAYEYLEPFDF-ELVIIDEAA 1549
                  3444444444444443333.......33444444444444.889999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1278  (0.0712812); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.31u 0.35s 00:00:01.66 Elapsed: 00:00:00.53
# Mc/sec: 11185.38
//
Query:       CDO71446.1  [L=482]
Description: Glycoside Hydrolase Family 71 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-122  407.7   4.7   4.6e-122  407.5   4.7    1.0  1  Glyco_hydro_71  Glycosyl hydrolase family 71
     0.0025   16.9   0.0      0.005   15.9   0.0    1.4  1  HMG-CoA_red     Hydroxymethylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> Glyco_hydro_71  Glycosyl hydrolase family 71
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.5   4.7  5.1e-126  4.6e-122       1     374 [.      36     454 ..      36     455 .. 0.95

  Alignments for each domain:
  == domain 1  score: 407.5 bits;  conditional E-value: 5.1e-126
  Glyco_hydro_71   1 VfaHfmvgntenytasdwekDiklAkaagiDgFaLNigskdswtaeqladayeaAeavg..fkLflSfDmavagawpk......sevislikkya 87 
                     V+aH++vg t+++t++dw++Di+lA+a giDgFaLN+g+ d++t++q ++ay+aAe+++  fkLf+S+Dm++   +p+      +++++l++++a
      CDO71446.1  36 VVAHHIVGLTAAFTVDDWTSDIQLAQANGIDGFALNVGN-DPFTTTQAQNAYQAAEQLNsnFKLFFSLDMSS---FPCttsddaTKLRDLVSQFA 126
                     89************************************7.*****************9888**********8...555556677*********** PP

  Glyco_hydro_71  88 shpaqlkvngkplvSTFeGeknaedwa.siksal..........teeiffvPdfsslgaaaaaekaldvvDGlfsWea.Wpkgatn......... 161
                     ++paql+v+gk++vSTF+Ge+++++ a +++ ++            +i+fvP+f+ +++a++++ +++v+DG+f +++ Wp + ++         
      CDO71446.1 127 TRPAQLQVDGKAFVSTFAGESCNFGHAdDVAGGWrseftqhpelAGKIHFVPSFF-ADPATFSA-FTGVMDGTFAFNSgWPLSLSTaqapqllpg 219
                     **********************9876548999999999999988469********.99999999.7*****************97779******* PP

  Glyco_hydro_71 162 ..................mstetDeaylsalkg.....kpYmmpvSpwffthlgkesynknwvwrgd.dlwakRweqvlelqp..dfveiitWND 230
                                        + ++D++ ++ l++     k+Ym++ +pwffth+g++++nkn+v+ gd +lw +Rwe+++++++  d+ve++tWND
      CDO71446.1 220 idlnnvdatgeaalqkiiGNFDQDTQAINGLANvqgsaKTYMAAAAPWFFTHFGADTFNKNFVFDGDeHLWVSRWETLIANRDkvDLVEVVTWND 314
                     ******************9*********9996667789*******************************************9999********** PP

  Glyco_hydro_71 231 ygEShYigplkekkaqdgsskyvegmpHdgwrdllkyyiaayKtgskkpaitedklvlwyRphpkkakcssgdttgnpanaelleDkvfvvallk 325
                     +gEShYigp ++ + ++gs+++v+g++H+gw+d+++y+++++Ktg++ pait+d+lv+w+Rphpk+a  +++d++g p+ ++l +Dk+++v+l++
      CDO71446.1 315 FGESHYIGPNNHGQLPPGSEAWVNGFDHQGWLDITNYFATQFKTGQA-PAITKDQLVMWARPHPKNA--TPNDPVGAPKDFQLFQDKLWAVVLAT 406
                     *********9999********************************87.*******************..4789********************** PP

  Glyco_hydro_71 326 spatvtvsvggkesetfsvkaGvnklsvpfngetGk.vkvsvvrngktva 374
                     ++ t+t+ +++++s+tf+v+aGvnk+s+++  ++G  ++ +++rng+t++
      CDO71446.1 407 ADGTLTLATSDTTSQTFQVTAGVNKFSLAL--SPGGfMHGTLTRNGQTTI 454
                     ******************************..77777*********9975 PP

>> HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-07     0.005     254     315 ..      58     120 ..      32     134 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.6e-07
                  ....HHHHHHHHHHTT--HHHHHHHHHHHTTSEEE.TTTEEEEEEEEE.----SBSHHHHH-H CS
  HMG-CoA_red 254 nahaaNgiaAvflAtGqDlaaveesshaiaaleev.edgdlygsvtlPsleVGtvGGgtklpp 315
                  ++  aNgi+  +l +G+D+    ++ +a+ a e+  ++ +l +s+ + s +  t   +tkl  
   CDO71446.1  58 QLAQANGIDGFALNVGNDPFTTTQAQNAYQAAEQLnSNFKLFFSLDMSSFPCTTSDDATKLRD 120
                  66789******************************65667*********99999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3235.13
//
Query:       CDO71447.1  [L=584]
Description: hypothetical protein BN946_scf184909.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-11   43.0   0.0    1.7e-10   41.8   0.0    1.7  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   9.4e-15   1.7e-10       1      67 [.     306     383 ..     306     398 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 9.4e-15
                 SSCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.TSCEEEEECE............BSS-BETTTEEEEEET CS
          CS   1 vkydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki.gkeklliege............LfgpIdpeesswties 67 
                 + y+W+Qt+d V+v i+++  +++++ +kv f++r+l+v + g    + + +            L+++I p++s wt+  
  CDO71447.1 306 PPYSWTQTEDMVTVAIPLPS-DTPTSHIKVAFSPRTLTVLVeGA-ATTPSADvpvvvprytlkaLWDEIRPSSSLWTFDR 383
                 57******************.9******************9444.333344479***********************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 3610.18
//
Query:       CDO71448.1  [L=420]
Description: hypothetical protein BN946_scf184909.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-42  142.7   0.2    1.6e-41  141.6   0.1    1.6  2  SAD_SRA   SAD/SRA domain


Domain annotation for each model (and alignments):
>> SAD_SRA  SAD/SRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.1   8.7e-46   1.6e-41      20     157 .]      12     165 ..       8     165 .. 0.92
   2 ?   -3.7   0.0      0.48   8.7e+03      96     105 ..     339     348 ..     335     356 .. 0.74

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 8.7e-46
                 HHHTTSS--SS-SEEEE-GGGEEEEEE-S-STT-EEETTEEEEE-SSSBTT--B........-S---SS.THHHHHHHHH.................HH CS
     SAD_SRA  20 lleagvHrplqagIsgskeegAvSivlsggYeddedegdeliYtGsggrkkkkkkk....eqsedqkle.rgnlaLaksl.................et 96 
                 l    vH+ ++agI+gsk++g++S+vlsggYedd+deg+ +iYtG ggr++k+++k    +q++dq++e   n++L+  +                 +t
  CDO71448.1  12 LHHSSVHSGIMAGIAGSKHKGCYSVVLSGGYEDDKDEGYCFIYTGCGGRDTKDGEKpregPQTCDQSWEnARNMSLKVRVfrtaesrtaltglqvsaHT 110
                 56789********************************************66666668999*********99*****999999999999999999999** PP

                 T--EEEEEEEE----EE...........EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-SSS CS
     SAD_SRA  97 kkpVRVirgskekkkkkkkkskyaPe.gyrYdGlYkvekywqekgksgfkvfkfkLrRlpgq 157
                 kkpVRV+rg      k   +s++aP+ gyrYdGlY ve++w++ g+sgfkv+kf ++Rlp+q
  CDO71448.1 111 KKPVRVVRGY-----KS--SSDFAPAqGYRYDGLYIVERAWMDVGNSGFKVCKFSFKRLPDQ 165
                 ********77.....33..689***77*********************************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.48
                 HT--EEEEEE CS
     SAD_SRA  96 tkkpVRVirg 105
                 +  pVRV r 
  CDO71448.1 339 QTCPVRVQRL 348
                 5679***994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2769.81
//
Query:       CDO71449.1  [L=537]
Description: hypothetical protein BN946_scf184909.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-71  238.6   0.0    1.4e-70  237.9   0.0    1.2  1  PP2C         Protein phosphatase 2C
  ------ inclusion threshold ------
      0.021   14.2   3.0      0.033   13.5   1.6    1.8  2  BUD22        BUD22
      0.083   12.9   0.0       0.21   11.6   0.0    1.6  1  TetR_C_7     AefR-like transcriptional repressor, C-terminal 
       0.97    7.5   6.8        1.3    7.0   6.8    1.1  1  DNA_pol_phi  DNA polymerase phi


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   0.0   3.1e-74   1.4e-70      15     255 ..      10     266 ..       8     268 .. 0.96

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 3.1e-74
                 HHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTE CS
        PP2C  15 medahislanlesssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskantepsksGstavvalirgtk 113
                 medah++  +l   ++ +s  ffav+dghggs +akya++hl++ l   +  ++  ++ +al+++fl  tde ++s+ +  + + sG+tav al++++ 
  CDO71449.1  10 MEDAHTAVLDLDG-EPTESNTFFAVYDGHGGSAVAKYAGQHLHQRLVADEAYRQK-DYPRALKNAFLG-TDEDIRSNPDF-ARDGSGCTAVAALVTKEG 104
                 9********9975.789******************************99999999.9***********.99999996666.68***************9 PP

                 .EEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTT...................BSBSB-EE-GGGTCCCC...CCST CS
        PP2C 114 .lyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngs...................LavsRalGDlelkpket...eeql 189
                  +yvAn+GDSr v+++kg+ak +l++dHkp++e E++RI +agg ++   grvng+                   La++RalGD+++k++     e q+
  CDO71449.1 105 rIYVANAGDSRSVISIKGEAK-QLSYDHKPQNETEKNRIVAAGGYIE--YGRVNGMhpglspssicrslesltgnLALARALGDFDYKKNAAlapEAQI 200
                 ********************9.*************************..***************************************9888******* PP

                 SB---EEEEEEE-TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHH CS
        PP2C 190 vsaePdvtsvklteedefliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargse 255
                 ++++P+v ++++teedef+i+acdG+wd+l++q+av +vr  +++++++ e++ee+++ ++a+ ++
  CDO71449.1 201 ITSDPEVIEHDITEEDEFIIIACDGIWDCLTSQQAVNVVRLLISQGRKLPEICEEICELCLAPDTT 266
                 **************************************************************9886 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.15   6.7e+02      56      95 ..      44      85 ..      41     141 .. 0.75
   2 ?   13.5   1.6   7.4e-06     0.033     166     265 ..     344     482 ..     312     515 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.15
       BUD22 56 qiAekilaskllktkklaeseelpealks...ikdkkpksnpe 95
                + A ++l+++l+ ++  +++ ++p+alk+    +d++ +snp+
  CDO71449.1 44 KYAGQHLHQRLVADEAYRQK-DYPRALKNaflGTDEDIRSNPD 85
                56899*********999996.5898888877767777777776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.4e-06
       BUD22 166 eeesdkeeesedsed..................eekeeseddeeeeeededdedaee....................deedeeaeerelaqydgllasd 226
                 +e+s++ ++ e+  +                  +   + +dd++++++++dd+ +++                    + +++ + +++l+++d++ a  
  CDO71449.1 344 RERSGAGNSGEGTTSlvgglanilggdgslvlhT---APDDDDDDDDDSDDDDADSHginarsllgstgfglggrtiQLDMTRSLREQLQELDAMGAFG 439
                 2333333333333337777788888888875431...22333332222222222222567899*************96678888899999999988844 PP

       BUD22 227 deded..............eyneetdeesseesdssdssesasesesessek...k 265
                 d d +              +                ++++  s+ es++ ++   +
  CDO71449.1 440 DNDVEmdedehelagdgerD-------------GHGETEHPPSDPESPTYTQngsS 482
                 44444111111333333221.............11111122222222222222220 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05      0.21      10      44 ..     226     260 ..     221     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
                 HHHHHT-HHHHHHHHHHHHHHHT-HHHHCCHHHT. CS
    TetR_C_7  10 llalllspevlalaRlviaeaerfPelarafyeag 44 
                 + ++l+s+++++++Rl+i+++ + Pe+++++ e +
  CDO71449.1 226 IWDCLTSQQAVNVVRLLISQGRKLPEICEEICELC 260
                 5689*************************998876 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.8   0.00029       1.3     667     719 ..     380     449 ..     324     453 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00029
  DNA_pol_phi 667 deeesdedeededdedvdeid.....................elreklaealgesgededdddsdsDedmdDeq 719
                  d++++d+d++d+dd+d                          ++ ++l+e+l+e +  +     d+D +md+++
   CDO71449.1 380 DDDDDDDDDSDDDDADSH--GinarsllgstgfglggrtiqlDMTRSLREQLQELD--AMGAFGDNDVEMDEDE 449
                  223333333333333333..244888**************9999999*******99..4444555555699887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3463.27
//
Query:       CDO71450.1  [L=300]
Description: hypothetical protein BN946_scf184909.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2221.28
//
Query:       CDO71451.1  [L=225]
Description: hypothetical protein BN946_scf184909.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-06   25.9   0.1    3.5e-05   23.5   0.0    2.0  2  Scm3      Centromere protein Scm3
     0.0028   15.8   0.2     0.0036   15.5   0.2    1.1  1  DUF2967   Protein of unknown function (DUF2967)


Domain annotation for each model (and alignments):
>> Scm3  Centromere protein Scm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.9e-09   3.5e-05      12      51 ..      75     112 ..      70     115 .. 0.87
   2 ?   -0.3   0.0      0.11   9.4e+02      29      37 ..     149     157 ..     146     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.9e-09
                 HHHHHHHHHHHHHSG..GGSS--B-TTT-SB-XXXXXXXX CS
        Scm3  12 lkkrwesifeKYeridfedqgDEIDlatgeivvDnGhlre 51 
                 l   w+++ e+Y++ ++ dq+D++Dl+  e  +D+G  r+
  CDO71451.1  75 LFAFWDQLAERYNK-PL-DQDDIVDLRRLEFLKDRGVTRS 112
                 5678**********.88.56****************8775 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.11
                 GGSS--B-T CS
        Scm3  29 edqgDEIDl 37 
                 e ++DE+Dl
  CDO71451.1 149 EVESDELDL 157
                 5579****9 PP

>> DUF2967  Protein of unknown function (DUF2967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2     4e-07    0.0036     405     501 ..      34     138 ..      27     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4e-07
     DUF2967 405 spgsrrkerqpstappptrarehftfdppqspksarssekarshfsfkee.............aqqareaaksanvgsnkaagkvvgteggigsgvggn 490
                  pgsr  +r p   ppp r+r   t  p  s  +  ss++ rs f+f ++               + r+    ++ g +++a +v   +  + +g g +
  CDO71451.1  34 PPGSRITHRIPDRPPPPKRVRTSAT--PSGSTSTGYSSDQHRSLFAFWDQlaerynkpldqddIVDLRRLEFLKDRGVTRSAPQVYEIGCFMDAGEGSG 130
                 59*******************9877..88899999*************998777777776666333344333344444444444443333333333333 PP

     DUF2967 491 rvvaasegdee 501
                 ++    eg+e 
  CDO71451.1 131 EAT---EGEES 138
                 322...22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1640.51
//
Query:       CDO71452.1  [L=376]
Description: hypothetical protein BN946_scf184909.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2593.20
//
Query:       CDO71453.1  [L=383]
Description: hypothetical protein BN946_scf184909.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-41  141.1  29.4    3.5e-30  105.7  18.7    2.1  2  BUD22     BUD22
  ------ inclusion threshold ------
       0.13   12.6   0.6       0.29   11.6   0.5    1.4  1  ESM4      Enhancer of split M4 family


Domain annotation for each model (and alignments):
>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7  18.7   3.9e-34   3.5e-30       1     274 [.      46     320 ..      46     338 .. 0.56
   2 !   38.9   7.8   7.2e-14   6.5e-10     360     431 ..     325     382 ..     313     383 .] 0.66

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 3.9e-34
       BUD22   1 lhhalkkLrkalkkakgferqklvkklKtakk......ekkskklerleeelealKslDleqiAekilaskllktkklaeseelpealksikdkkpksn 93 
                 lhh+++++rka kka  fe++klvk+lKta+       + k ++ ++le++l+ lK++D+e+ A+++l++k+lk++ l e++++++a+++ k  ++  +
  CDO71453.1  46 LHHGVHEVRKASKKAVAFELRKLVKRLKTARGekpkkgNIKLDDPAELERQLDILKHIDHEPFANTTLKTKILKDHLLSENDDVKAAVAE-KLCENLVQ 143
                 7*****************************9988877667777888999*****************************************.66566665 PP

       BUD22  94 peekneelektkalenvtsrLlnsktvkevveeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeee........eeesdkeeesedsedeeke 184
                 p+      +  + +++v +r+l+skt++++v+++v+s+k++++++ +k+k ++ +++ ++++++ ++ e  +        +   +k+   ++s    +e
  CDO71453.1 144 PQ------QPGSSAAKVHARILSSKTIADAVHAVVDSLKEIVDPSLAKAKAKALSREPESDAESGERGERVDddadlmpvK---GKKARLAASGA-PDE 232
                 55......34699******************************99933333333333333333333333333334453320...22222222222.112 PP

       BUD22 185 eseddeeeeeededdedaee...........deedeeaeerelaqydglla....sddededeyneetdeesseesdssdssesasesesessekkkkk 268
                 ++ed + + +e e+     +           ++++++ e+  +    +  +     ++ed +         + +++++s ++ s++e   +++ k  k+
  CDO71453.1 233 AEEDASGSGSEAEG-----DaagwesgtvdgEGDAAGWESGTVDGDGD--GlrsgGSSEDGE---------AYSDEEESGDDASEDEDAAPEKPK-GKA 314
                 22222222222222.....12232344444422233333333322222..022222222222.........222222222222222222222111.111 PP

       BUD22 269 kkkkkk 274
                 +++k+ 
  CDO71453.1 315 PPAKDR 320
                 111111 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 7.2e-14
       BUD22 360 dsGWdakrgakaeedksekkskskakkkkkkkkddkkakaaaekelHPSWeAkkkake..kkkaakfqGKKIvF 431
                 + GW +k                 a+++++  +  +k k++++k+lHPSWeAk+k ke  + + ++ qGKKI+F
  CDO71453.1 325 KPGWPKKE----------------ASADAGDGSGGQKRKKSDDKPLHPSWEAKRKLKEklNPSIVPAQGKKIKF 382
                 33554333................333444444555555667777*************7777888********9 PP

>> ESM4  Enhancer of split M4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   3.2e-05      0.29      19     116 ..      54     143 ..      44     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
        ESM4  19 kansekkavrrlkkvlkpLrrllkkggkgrkteltlahpnnvdlentqqqqqqqqeeldednssnaeLeqqlveeeveksaqscaacahgrncqhthh 116
                 +  s+k    +l+k++k L++   +g+k +k +++l  p  ++le     q  +++++d++  +n++L+++++++    +++ ++a  +++ c++  +
  CDO71453.1  54 RKASKKAVAFELRKLVKRLKT--ARGEKPKKGNIKLDDP--AELER----QLDILKHIDHEPFANTTLKTKILKDHLLSENDDVKAAVAEKLCENLVQ 143
                 445566666788888888877..6777777765555555..44444....44578899*****************96667999999888888877444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2850.39
//
Query:       CDO71454.1  [L=261]
Description: hypothetical protein BN946_scf184909.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1829.84
//
Query:       CDO71455.1  [L=228]
Description: hypothetical protein BN946_scf184909.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-09   35.2   0.0    2.1e-08   33.9   0.0    1.7  1  F-box-like  F-box-like
  ------ inclusion threshold ------
       0.14   11.2   0.7       0.21   10.6   0.7    1.3  1  Pes-10      Pes-10


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.4e-12   2.1e-08       2      46 ..      23     116 ..      22     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.4e-12
  F-box-like   2 srLPdEiLlqIF...................................................syLppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                 + LP E+L+ IF                                                   ++Lp++  + +++VC rWr val +plLW+++ 
  CDO71455.1  23 NELPSELLSLIFtlgwtperdeepdgddfddvdsddgtyssisssdshshhskdpeeereekeRRLPFN--VLVSHVCERWRAVALENPLLWSHVR 116
                 57*************************************999999999988888888877777678888..779*******************997 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   2.4e-05      0.21     180     238 ..      43      98 ..      24     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.4e-05
      Pes-10 180 deedseedd.ddiededeedesssstdsgiesedeElveereeeeeeeaerleaaigeil 238
                 d e+ + dd dd+++ d + +s+ss ds  ++ ++   +e+e+ee+e+   ++ +++ ++
  CDO71455.1  43 D-EEPDGDDfDDVDSDDGTYSSISSSDSHSHH-SKD--PEEEREEKERRLPFNVLVSHVC 98 
                 2.234556668888888888999999997666.333..4566666666666777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 1466.55
//
Query:       CDO71456.1  [L=838]
Description: hypothetical protein BN946_scf184909.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.26   11.3   2.2       0.62   10.1   2.2    1.6  1  DUF2892   Protein of unknown function (DUF2892)


Domain annotation for each model (and alignments):
>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2   3.4e-05      0.62      20      61 ..     266     311 ..     258     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.4e-05
     DUF2892  20 llllallglsggw.......gwllglvGavllltgltgfCplyallg.in 61 
                 ll+  ++g+s +w       +     +G   ++++++g+C + +++g ++
  CDO71456.1 266 LLANFFTGGSRWWrftalpgL----WLGMTIVISAMFGVCMMIYVFGdLR 311
                 566667777777799955544....59******************97554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5385.27
//
Query:       CDO71457.1  [L=289]
Description: hypothetical protein BN946_scf184909.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-13   49.8   0.2    9.6e-13   48.6   0.2    1.6  1  APH             Phosphotransferase enzyme family
    2.6e-08   33.7   0.0    3.7e-08   33.2   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.11   11.8   0.0       0.35   10.2   0.0    1.6  2  Pkinase         Protein kinase domain
       0.14   11.5   0.0       0.24   10.7   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2   2.1e-16   9.6e-13      32     210 ..      52     246 ..      25     266 .. 0.69

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.1e-16
                 S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS........HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-..... CS
         APH  32 raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr........klsaaqlpellealgeflaalhqvd.paalpla..... 116
                 ++++ +++  al  ++ ++ +pvP+v      +  ++    ++ y++g  l++        +  +      l++ ++ l+++ +++ +a  ++      
  CDO71457.1  52 DSEPVCSEANALNLVFTATTIPVPRVRR---VARREWDFLIVMDYIDGPLLAQvwptlsiwRKLC--VAFTLRRYIRQLRRFTRAPaGAPPGPLsggep 145
                 678889999999999*************...8999999***************977665552222..33457888899999999954444444433333 PP

                 ................SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S...........SS-EEEE-SS-SGGGEEEC..TTEEE CS
         APH 117 ................dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg...........elptvllHgDlhpgNllvdpddgrvt 188
                                 ++ a+++e+ ++++++++                  +a+ ++++p+           ++p vl+H Dl+++N++v  ++gr+ 
  CDO71457.1 146 prtcesplfgpvipyrGPFASYAEMSAFFNERHQ------------------MAMDLKNVPKddparkelfddSEPLVLCHQDLNLRNIIVG-EGGRL- 224
                 3333333333333333444444444455555533..................3333333333444445555557789***************.88998. PP

                 EE---TT-EEEECCHHHHCCHH CS
         APH 189 GviDfedaglgpplyDlavllr 210
                  +iD++ +g+ pp ++ a++l+
  CDO71457.1 225 WLIDWGWSGYYPPWFEYATMLT 246
                 9*******************93 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.2e-12   3.7e-08     135     192 ..     194     250 ..     167     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.2e-12
                     HHHHHCHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTE CS
  Choline_kinase 135 eklleelespvvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiEwag 192
                     +k l +  +p+v+cH Dl  +Ni++  e ++l+lID+ ++gy +  f+ a+++   ++
      CDO71457.1 194 RKELFDDSEPLVLCHQDLNLRNIIV-GEGGRLWLIDWGWSGYYPPWFEYATMLTQNEY 250
                     4555578899***************.************************99876555 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.31   1.4e+03      62      88 ..      76     102 ..      43     125 .. 0.74
   2 ?   10.2   0.0   7.8e-05      0.35     119     163 ..     206     250 ..     203     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.31
                 -EEEEEEESSEEEEEEE--TTEBHHHH CS
     Pkinase  62 rlyevfeekdelylvleyveggeladl 88 
                 r+ +v +++ ++++v++y++g  la++
  CDO71457.1  76 RVRRVARREWDFLIVMDYIDGPLLAQV 102
                 667777888899999999998887776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.8e-05
                 EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGG CS
     Pkinase 119 iiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseY 163
                 ++H Dl   Ni++ e g l ++D+G +  +    ++ ++    eY
  CDO71457.1 206 LCHQDLNLRNIIVGEGGRLWLIDWGWSGYYPPWFEYATMLTQNEY 250
                 58*************************999998888887777777 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.4e-05      0.24     139     166 ..     206     229 ..     198     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.4e-05
         Kdo 139 vnHadlyaknillqqeeeeeaeiwliDl 166
                 ++H+dl+ +ni + +++    ++wliD 
  CDO71457.1 206 LCHQDLNLRNIIVGEGG----RLWLIDW 229
                 79**************9....******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2066.28
//
Query:       CDO71458.1  [L=254]
Description: hypothetical protein BN946_scf184909.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0021   18.0   0.1      0.011   15.7   0.1    1.9  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.021   14.4   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.088   7.9e+02      39      84 ..      82     124 ..      68     135 .. 0.77
   2 !   15.7   0.1   1.2e-06     0.011     162     198 ..     207     247 ..     178     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  39 revallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 +  al  ++ ++ +pvP+v      + +++    ++ y++g  l++
  CDO71458.1  82 EANALDIVFTATTIPVPRVGR---VARGEWDFLIAMDYIDGPLLAQ 124
                 445555666788899999988...7888888999999999988776 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-06
                 S......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 162 g......elptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +      ++p vl+  Dl+++N+ v  ++gr+  +iD++ +g+
  CDO71458.1 207 RkdlfddSEPLVLCLQDLNLRNITVG-EGGRL-WLIDWGWSGY 247
                 134456699*****************.88998.8****97765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.3e-06     0.021     140     177 ..     212     248 ..     179     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-06
                     CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEE CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklvlIDFEYagyn 177
                     +  +p+v+c  Dl  +Ni +  e ++l+lID+ ++gy 
      CDO71458.1 212 DDSEPLVLCLQDLNLRNITV-GEGGRLWLIDWGWSGYY 248
                     67789***************.9**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1932.28
//
Query:       CDO71459.1  [L=498]
Description: hypothetical protein BN946_scf184909.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-54  184.3   0.0      6e-52  176.4   0.0    2.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    6.1e-13   49.1   0.9    1.2e-12   48.2   0.9    1.5  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.0   6.7e-56     6e-52       1     213 []     158     368 ..     158     368 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 6.7e-56
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.............S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.............d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepva 84 
                  Gi+++D++ +i++Gq++ i++a+g+++++i++++++q+                +  ++++++G ++++++ + ++f+e++ ++r++l++n +n+p++
   CDO71459.1 158 GISTIDVMNSIARGQKIPIFSAAGLPHNEIAAQIVRQAGLVkgptkdvhdghedNfSVVFAAMGVNMETARFFKQDFEENGSLDRVTLFFNLANDPTI 255
                  899**********************************876689999******98689***************************************** PP

                  HHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  85 areasiytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvtta 182
                  +r++++++++t+AEy+++q                  + +s++ +e+p+++gyp+y++++l+++yERag+++ r+Gs+t++++++++++D+++p+++ 
   CDO71459.1 256 ERIITPRLALTTAEYYAYQL----------E------KHVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDL 337
                  *****************983..........3......45677778***************************************************** PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  t +it+g+i++d++l++r+++P+invl S+S
   CDO71459.1 338 TGYITEGQIFVDRQLHNRQIYPPINVLPSLS 368
                  *****************************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.9   1.3e-16   1.2e-12       1      69 []      35     101 ..      35     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.3e-16
                    EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBT.TSEEEEES CS
  ATP-synt_ab_N   1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsr.GteVkrTG 69 
                    +++v+Gp+v  ++++   p+++++++  l++ gt++ g++l++++ k++v+v+++t+G+++  t V++TG
     CDO71459.1  35 VSAVNGPLVVLDNVKF--PAYNEIVQLTLPD-GTKRGGQVLEVQGKKAIVQVFEGTSGVDVkATHVEFTG 101
                    789********99999..8888888888889.*****************************999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3414.80
//
Query:       CDO71460.1  [L=752]
Description: hypothetical protein BN946_scf184909.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  138.9   0.1      1e-39  136.4   0.0    2.4  3  TFCD_C    Tubulin folding cofactor D C terminal
  ------ inclusion threshold ------
       0.24   11.8  11.2        2.7    8.5   1.1    5.1  5  HEAT_2    HEAT repeats


Domain annotation for each model (and alignments):
>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.71   6.4e+03      18      50 ..      56      87 ..      55     113 .. 0.56
   2 ?   -2.7   0.0      0.48   4.3e+03      21      50 ..     377     403 ..     376     442 .. 0.61
   3 !  136.4   0.0   1.1e-43     1e-39       1     176 [.     487     668 ..     487     671 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.71
      TFCD_C 18 vRavAgkvlqrllhndpakipsiphreelekif 50
                vR +A  vl +l ++++ + +  ph  +l +++
  CDO71460.1 56 VRDAASYVLWSLARAQSVE-ALKPHAVNLARHL 87
                7777777777777777763.5555555554443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.48
      TFCD_C  21 vAgkvlqrllhndpakipsiphreelekif 50 
                 +A+++l+r+++ ++   p+++ r++   +f
  CDO71460.1 377 KAVRCLLRMVDRKEGGSPNVEARRN---AF 403
                 6888888888887764444444443...33 PP

  == domain 3  score: 136.4 bits;  conditional E-value: 1.1e-43
      TFCD_C   1 qkiigallkqavEKiDrvRavAgkvlqrllhndpa.....kipsiphreelekifpeeeeedlnwnspsevfprlvqLLqlpeyresvleGlvvSvGgl 94 
                 +++ig++lkq+vE++D+vR++Ag+ +++ll    +     +++++ + e+++++f ++ +e++ wn+  ++fpr+vqLL++++y++++l+G+v+S++  
  CDO71460.1 487 HEAIGGILKQGVERLDNVRQQAGESFLNLLLLPLPavpnaELWKVHGEEKMKELFLSD-QESVGWNDGGWLFPRAVQLLDIERYCKPILAGIVLSISTK 584
                 6799*************************9998887888877*************999.9*************************************** PP

      TFCD_C  95 teslvkassqaLleylkeles...kadeeeleslleeliklleenkkddRvvvPllktldlLlesgvleelaeeessflekllkl 176
                 t+s++++ +++L++y  +l+    + d++ ++sl+++l++ ++ n ++++vvvP+l+ +++Lle +++e+l ++++  l++l++l
  CDO71460.1 585 TDSTQRPVANSLVNYALQLPVatdEPDQYDQRSLARDLLDQAQWNVTSNNVVVPVLQAFNILLEGDAFENLSQDSE-GLQTLINL 668
                 ****************9999999999***********************************************995.46666665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.22     2e+03      25      37 ..      65      77 ..      52     113 .. 0.52
   2 ?   -0.7   0.0      0.21   1.9e+03      13      60 ..      96     148 ..      84     181 .. 0.60
   3 ?    8.5   1.1    0.0003       2.7       7      73 ..     269     346 ..     264     350 .. 0.68
   4 ?    4.2   0.0    0.0065        58       3      53 ..     343     404 ..     341     421 .. 0.72
   5 ?    2.1   0.0      0.03   2.6e+02      31      56 ..     677     702 ..     661     738 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.22
      HEAT_2 25 grignpealpaLv 37
                 +++  ++++aL 
  CDO71460.1 65 WSLARAQSVEALK 77
                3333333333332 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
      HEAT_2  13 dpevrraairaLg.rignpealpaLvellededpa...vRraaaeaLg.aigd 60 
                 +  +rraa  a     g ++++p  +++l+ +d +   vRr+a   ++ ++++
  CDO71460.1  96 EVHIRRAASAAFQeYVGRTSLFPHGIDVLRKTDFYavgVRRNAFLVAApEVAE 148
                 45566666666663346677777777777555543344777777655545543 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0003
      HEAT_2   7 alendpdpevrraairaLg.......rignpea....lpaLvellededpavRraaaeaLgaigdpealpaLkelldd 73 
                 ++++   + v++aa++ ++       +++++++    ++ + ++l++ + av++aaa aL+a+ +  +++a  ++l  
  CDO71460.1 269 FIQSPRQELVAAAACQFIAaaislpeTQHDQSTvphwRKVVDSALKSRSVAVQEAAASALAAVSRLVNCSAVVDRLIK 346
                 5555555667777777777766666545555554553555666779999*************9876666666666655 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.0065
      HEAT_2   3 aLlqalendpdpevrraairaLg...rignp....ealpaLvell.....ededpavRraaae 53 
                  L++   +  + e+++  +r+Lg    +++p    +a+++L++++      +++ + Rr+a  
  CDO71460.1 343 RLIKDF-ETGNAELQQSLARVLGvldYLAHPhgvqKAVRCLLRMVdrkegGSPNVEARRNAFV 404
                 567777.6789999999******9986666666669999999999643222255566776665 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.03
      HEAT_2  31 ealpaLvellededpavRraaaeaLg 56 
                 ++++ L ++l+++ p+vR+  ae+L 
  CDO71460.1 677 DCIAGLSQYLTHQYPRVRADTAEYLY 702
                 56777888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5148.07
//
Query:       CDO71461.1  [L=462]
Description: hypothetical protein BN946_scf184909.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3549.83
//
Query:       CDO71462.1  [L=884]
Description: hypothetical protein BN946_scf184909.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   74.1   2.1    1.9e-11   44.1   0.0    3.5  4  PH_4      Pleckstrin homology domain
  ------ inclusion threshold ------
       0.15   12.3   0.2        3.3    8.0   0.0    2.7  3  PH_6      Pleckstrin homology domain
        9.9    6.5   8.2         24    5.2   8.2    1.6  1  DUF755    Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> PH_4  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.84     5e+03     104     132 ..      83     111 ..      66     133 .. 0.67
   2 ?    0.2   0.0     0.092   5.5e+02      16      35 ..     629     648 ..     619     657 .. 0.81
   3 !   44.1   0.0   3.1e-15   1.9e-11      18     115 ..     729     814 ..     725     824 .. 0.89
   4 !   26.9   0.1   6.1e-10   3.6e-06     151     183 .]     827     859 ..     816     859 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.84
        PH_4 104 rcfvlwfgkkralskakkskkkekekkak 132
                   f l++g kr++  ++++k+   e +++
  CDO71462.1  83 LQFFLRHGGKRENWGESQAKSVRAEMRRR 111
                 57999999999988877766655544433 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.092
        PH_4  16 kkyfvvLipGflllfklfkr 35 
                 +++ +vL++G+++ f+ ++ 
  CDO71462.1 629 RSFELVLTSGRVIRFEAYSC 648
                 56889**********99875 PP

  == domain 3  score: 44.1 bits;  conditional E-value: 3.1e-15
        PH_4  18 yfvvLipGflllfklfkrsktgaskktvhkeheltiplkdcYvysGkltelDLlernktfdeanpgehalprvyaDgwkSseeessrcfvlwfgkkra 115
                 ++++Li+G+l+ ++++ r++       +h++++ + pl d+Yv sG ++ + L   + ++d+++     ++r y+Dg+++ + e+++ fvlwf+  + 
  CDO71462.1 729 IQLILISGHLVQYHITGRTS-------LHHRKDSVYPLLDAYVCSGYFAAQYLP--DGQYDANA---PPVARRYQDGLETDDSEEDTLFVLWFRVPKG 814
                 679**************998.......99*********************8888..78888755...589***********************87665 PP

  == domain 4  score: 26.9 bits;  conditional E-value: 6.1e-10
        PH_4 151 svsrlgvsgksivfmarsrqerdlWvlaiaaEl 183
                  ++ l  + k  vf++rs+ erd+Wv+ai+aE+
  CDO71462.1 827 DIPPLTAKRKAAVFRTRSKLERDAWVWAINAEI 859
                 6788999*************************8 PP

>> PH_6  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   7.8e+03      67      94 ..      69      96 ..      54     104 .. 0.64
   2 ?    1.0   0.0     0.084     5e+02      80     109 ..     628     658 ..     603     660 .. 0.76
   3 ?    8.0   0.0   0.00055       3.3      85     110 ..     831     856 ..     815     858 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
        PH_6 67 inLadasevaadgeqkFhltakGkkhtF 94
                 + +  sev++  + +F l  +Gk+  +
  CDO71462.1 69 SDSSSLSEVIHRHALQFFLRHGGKRENW 96
                4455667777788888888888887765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.084
        PH_6  80 eqkFhlta.kGkkhtFkasstaeRdnWvaql 109
                  + F l+  +G+  +F+a s a   +W+  l
  CDO71462.1 628 RRSFELVLtSGRVIRFEAYSCATALEWIVRL 658
                 4567766449*****************9887 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00055
        PH_6  85 ltakGkkhtFkasstaeRdnWvaqlk 110
                 ltak k + F++ s  eRd Wv +++
  CDO71462.1 831 LTAKRKAAVFRTRSKLERDAWVWAIN 856
                 799999****************9987 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.2    0.0041        24      96     119 ..      47      73 ..      44      76 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0041
      DUF755  96 kksakkr...kksssSSssssssssss 119
                 k+++++     +++sSSsss++s+sss
  CDO71462.1  47 KRKQRRAffrGRQESSSSSSDESDSSS 73 
                 333333367666677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 6337.31
//
Query:       CDO71463.1  [L=154]
Description: hypothetical protein BN946_scf184909.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-28   99.3   0.1    1.4e-28   98.8   0.1    1.1  1  Ribosom_S12_S23  Ribosomal protein S12/S23


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.1   7.9e-33   1.4e-28       4      94 ..      63     145 ..      59     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 7.9e-33
                      -----S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEB CS
  Ribosom_S12_S23   4 lrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykv 94 
                      ++k +ks+ leg++qk+Gvv +    ++kkPnsA Rkv++v+L+  gk+v+a+ipgeg  ++l+Eh++vl+rG+r      +DlpGvry  
       CDO71463.1  63 KTKLSKSPLLEGNTQKKGVVSQIFIAKPKKPNSAKRKVAKVKLS-TGKTVQAYIPGEG--HNLQEHSVVLIRGGR-----TQDLPGVRYDF 145
                      677899**************************************.*************..***************.....9********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1136.96
//
Query:       CDO71464.1  [L=341]
Description: hypothetical protein BN946_scf184909.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-15   57.2   0.0    1.9e-15   56.4   0.0    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
     0.0016   18.5   0.1      0.003   17.6   0.1    1.5  1  zf-RING_UBOX  RING-type zinc-finger
     0.0053   16.6   0.0     0.0098   15.7   0.0    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0065   16.6   0.0      0.013   15.7   0.0    1.5  1  U-box         U-box domain
  ------ inclusion threshold ------
        0.8   10.4  13.4        7.2    7.3   7.0    2.6  2  CNDH2_M       PF16858


Domain annotation for each model (and alignments):
>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   5.4e-19   1.9e-15       1      57 []     244     302 ..     244     302 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 5.4e-19
                 SXXXXXSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHC..TTTS-EE-SCCC-S CS
      zf-Nse   1 delaieeerislkCPltlqpfeePvtskkCpHvFEreaIleli..krkktvkCPvagCs 57 
                 d++++ + +++ kCPltl ++++P+tsk C H++  +aI e++  +++++++CP +gC+
  CDO71464.1 244 DDVQVGGVTQDYKCPLTLTTLVDPLTSKVCGHSYSANAIKEYLgnSKTRSKECPATGCK 302
                 89*****************************************77778899*******6 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   8.3e-07     0.003       1      39 []     257     297 ..     257     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.3e-07
  zf-RING_UBOX   1 CpIClelftdP...lvlpCGHtFCreClw.elskslegafkCP 39 
                   Cp  l ++ dP   +   CGH++  + ++ +l +s+ ++  CP
    CDO71464.1 257 CPLTLTTLVDPltsK--VCGHSYSANAIKeYLGNSKTRSKECP 297
                   999999999**5432..3**********668999999999998 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0098       1      38 [.     256     297 ..     256     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn....eCP 38 
                 kCp+ l  l dp++++ CgH++ ++ i+++L +++    eCP
  CDO71464.1 256 KCPLTLTTLVDPLTSKVCGHSYSANAIKEYLGNSKtrskECP 297
                 7****************************9976532112788 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.6e-06     0.013       4      63 ..     254     319 ..     251     325 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.6e-06
                 GGB-TTT-SB-SSEEEETTT.EEEEHHHHHHHHTT....SSB-TTT..-SB--GGGSEE-HHHHHH CS
       U-box   4 efldpitlelmkdPvilpsg.vvvdrstiekhlls...rdktdPft..repltqdqlipnlelKek 63 
                  +++p+tl+ + dP  +    +++  ++i+++l +   r+k +P t  +++++ + l pn+el ++
  CDO71464.1 254 DYKCPLTLTTLVDPLTSKVCgHSYSANAIKEYLGNsktRSKECPATgcKKQISLAVLEPNRELAKR 319
                 689***********9987655************9999999******99999***********9765 PP

>> CNDH2_M  PF16858
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.0     0.002       7.2      65     127 ..      27      91 ..       5     103 .. 0.62
   2 ?    6.4   0.4    0.0038        14      65     128 ..     181     247 ..     157     256 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.002
     CNDH2_M  65 askgssqksksrskafsspngrsggtgkksepeksq..gneddlsePedddiPdnnlpesddads 127
                 ++ ++  +++  +    ++ +rs  +gkk++ + +q  ++++d+ eP+++diP ++l+++  +++
  CDO71464.1  27 SQAPQQEQQEDVEMDEEERPRRSKKSGKKEKKRAAQqdSDGEDMEEPVEEDIPIPELGDQPLDKN 91 
                 3333333333333444444466666666666666664366889999*******998887654444 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0038
     CNDH2_M  65 askgssqksksrskafsspngrsggtgkksepeksq..gneddlse.PedddiPdnnlpesddads.g 128
                 a++++ q++ +  +  +s+++   ++ + ++ ++++   ++ d++  P +d iP ++ ++sdd+d+  
  CDO71464.1 181 AYHRGVQEQMETYQHKTSRQKYAKSE-HYQKFKQAVyeVQHPDIAMpPLADLIPPEDGDDSDDDDDvQ 247
                 45555555555444444443333333.33333333223346677777888889988888888887742 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1646  (0.0918066); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2392.08
//
Query:       CDO71465.1  [L=593]
Description: hypothetical protein BN946_scf184909.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-37  127.7   0.0    6.7e-37  126.8   0.0    1.5  1  DDE_1        DDE superfamily endonuclease
    7.1e-10   38.8   0.1    1.9e-09   37.4   0.1    1.7  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.026   14.3   0.0    1.7  1  DUF4817      Helix-turn-helix domain (DUF4817)


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   1.1e-40   6.7e-37       2     175 .]     253     422 ..     252     422 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 1.1e-40
       DDE_1   2 erltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWLkvfdkrleaekrkilLlldssrshetvelleselqni 100
                  +lt +  +na+ s kL+p+vigk+k+pr f +  kt  +l+++y+ n kaw+t+ + + W+k++d++l+a++rkilLl d++ +h   e     l+ i
  CDO71465.1 253 TQLTYAFTCNADSSDKLPPMVIGKYKKPRPFGG--KTGAELGFDYHHNAKAWMTAVLYQSWIKHWDTKLVAQHRKILLLQDNFSGHIVPEG----LRAI 345
                 679999*************************99..***************************************************98887....8888 PP

       DDE_1 101 klvflPassasllqPldqgvvselKarYrrqllqalleeqnrlsk..eqkkltlldalkfikkAwnavsketiksaf 175
                 ++  + ++ +  +qP dqg++  +Ka+Yr+++++ +++  ++  +  +  ++ +l a+++  +Aw av++ ti++++
  CDO71465.1 346 HVENFEPNLTPHVQPDDQGIIRCFKAHYRAKYIERAIDRYDSGISpaQIYEIDILTAMRIADAAWRAVNVTTIRHCW 422
                 8888889********************************999988344457789**********************9 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   3.2e-13   1.9e-09       2      64 ..     124     186 ..     123     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 3.2e-13
                  HHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS--X CS
  HTH_Tnp_Tc5   2 pelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhglkr 64 
                  p++ + +  W+ q+re g+ +tg+++r+k+  +a +a  l+e+  ++S+gWl+ Fk Rhgl +
   CDO71465.1 124 PQISEMMNCWVIQAREAGVLLTGSVLRAKWTSFADRAGILKEDWLSLSEGWLEAFKARHGLRG 186
                  788899999*************************9999*********************9975 PP

>> DUF4817  Helix-turn-helix domain (DUF4817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.3e-06     0.026       1      32 [.      50      81 ..      50      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-06
     DUF4817  1 TleqRifiVkaYykngesvtatqrafrrrFpn 32
                Tl qRi+i+ +++ ng+  t t ++f + +p+
  CDO71465.1 50 TLRQRIEILDWHHANGKKQTRTAQHFDKIYPH 81
                899****************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3937.22
//
Query:       CDO71466.1  [L=241]
Description: hypothetical protein BN946_scf184909.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-20   71.4   1.0    1.1e-19   70.3   1.0    1.6  1  MRP-L47        Mitochondrial 39-S ribosomal protein L47 (MRP-
  ------ inclusion threshold ------
      0.014   15.4   2.9      0.056   13.4   2.9    2.1  1  Ribosomal_L29  Ribosomal L29 protein


Domain annotation for each model (and alignments):
>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   1.0   1.2e-23   1.1e-19       2      87 .]      72     170 ..      71     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.2e-23
     MRP-L47   2 eeffddkkdl.kseee.v........kvgraWaaeeLrkksfedLhklwyvllkekNmLlteeeellrkqek...mpsperlkkvkesMeniktVlkeR 87 
                 + ff++k+++ k+++e v        k+gr+W+a+eLr+ksf+dLh lwyv+l+e+N+L t+++e++r   +        +  + +++M++ik V++eR
  CDO71466.1  72 YAFFRKKEKDgKTSYEtVepidmvadKSGRSWTAPELRRKSFKDLHTLWYVVLRERNLLATQQAEARRIGANeqaLSLWTKERRCRKTMARIKYVINER 170
                 55666644444444442311111122567************************************998766622333344556799************9 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.9   6.3e-06     0.056       2      57 .]     107     170 ..     106     170 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.3e-06
                    HHHHS-HHHHHH.......HHHHHHHHHHHHHHHHH.......HT.SSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   2 elrelsdeeLke.......klkelkkeLfnLrfqka.......tg.qlenpsrirkvRkdIARikTvlrer 57 
                    elr +s ++L+        +          L  q+a        + +l+   + r  Rk++ARik v++er
     CDO71466.1 107 ELRRKSFKDLHTlwyvvlrE-------RNLLATQQAearrigaNEqALSLWTKERRCRKTMARIKYVINER 170
                    67777777777744433322.......33333333322343324456677788899**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1887.77
//
Query:       CDO71467.1  [L=287]
Description: hypothetical protein BN946_scf184909.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-45  156.0   0.0    1.6e-45  155.7   0.0    1.0  1  SQS_PSY   Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.0   8.8e-50   1.6e-45      30     263 .]      37     280 ..      30     280 .. 0.94

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 8.8e-50
                 HHHHT-.-----........------------..---------THHHHHHHHHHHT--HHHHHHHHHHTS--SS-..--SHHHHHHHHHHHHHHHHHHH CS
     SQS_PSY  30 creaddlvDdvseplqararldwwrdavdavyaedklkpprepvlralaqlirtyklpkellleliegmeadleftryetlddLeeYcyrvagvVgelc 128
                 ++e++ + D+vs++ ++++rl++wrdav+++    +++ppr+p++ al+++ ++ +lp+ +++++i+++ a l++ + +tl++L ++++ + ++  +l+
  CDO71467.1  37 AVELASIQDNVSNAMIGKMRLQFWRDAVKSIA---DGRPPRHPIALALHDASQKANLPSYHFRRIIDARDAELHTSTHMTLESLTAHAESTSSTFFYLL 132
                 789*****************************...899************************************99999******************** PP

                 HHHH-S.S-HHHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHHT--HHHHHHT-.-SHH.HHHHHHHHHHHHHHHHHHHHHTGGG..... CS
     SQS_PSY 129 lrllgarrsdralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkefgvseedllrkgvrsae.lrallrrlaerArelldearellkq..... 221
                 l ll +++s+ +  +aa++lG+a  +  +lR +p++a +gr+ +Pa++ +++gv++ed++r+g  +a+ + +++++ a+ A++ l +are+ kq     
  CDO71467.1 133 LSLLNLSSST-TFSHAASHLGIAQSIHVLLRALPYHASKGRMVIPAEITARHGVRQEDVFRRG-GDADgISDAVFEFATVANDNLLTAREMFKQsskgg 229
                 ******6655.8**************************************************9.89999****************************** PP

                 ....S.-HHHHHHHHHHHHHHHHHHHHHHHTTT-.T......TT------HHH CS
     SQS_PSY 222 ....lpdrrarpalllavalyrailerieaadyd.v......lsrrvklsllr 263
                     +  +++  +++l   + r++l r+ea ++d +      ++++++++ +r
  CDO71467.1 230 dggkV--PQVAMPVFLYGIPTRDYLGRLEAVNFDaFapslqmRDWKLPWRIWR 280
                 **866..4588888********************8899977555999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2198.36
//
Query:       CDO71468.1  [L=907]
Description: hypothetical protein BN946_scf184909.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.012   16.5   1.4      0.029   15.3   0.0    2.2  2  DAZAP2         DAZ associated protein 2 (DAZAP2)
       0.17   12.1   3.9        1.1    9.5   0.2    2.4  2  baeRF_family5  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> DAZAP2  DAZ associated protein 2 (DAZAP2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   3.3e-06     0.029      81     114 ..     491     524 ..     449     530 .. 0.86
   2 ?   -1.9   0.5      0.66   5.9e+03      38      46 ..     740     745 ..     687     791 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.3e-06
      DAZAP2  81 asaasiPPPPPGvapnaAQlAamqGqnvvltqkk 114
                 ++a+++P PPPG  p  A lAa ++ +v l+q  
  CDO71468.1 491 TAAPVLPMPPPGQNPGDAELAADENMDVELGQSD 524
                 47899***********************999976 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.66
      DAZAP2  38 aalPmakve 46 
                   +P    +
  CDO71468.1 740 PSTPR---Q 745
                 22222...1 PP

>> baeRF_family5  Bacterial archaeo-eukaryotic release factor family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00012       1.1      61      86 ..     803     828 ..     777     836 .. 0.85
   2 ?    3.2   0.4     0.011        95      24      54 ..     869     900 ..     864     907 .] 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
  baeRF_family5  61 erfeenqqRwyKslaskleklakere 86 
                    +r e+n qRw K+la  l++++k+ +
     CDO71468.1 803 RREETNLQRWIKHLAVILKEEQKKYN 828
                    68899**************9999876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.011
  baeRF_family5  24 eeekeyeldletedWrekkgpskaer.ssgsg 54 
                    + ek y  d+  edW e+++++ + r ++g+ 
     CDO71468.1 869 RREKLYGADVPDEDWSESDADEYQYRtTRGKR 900
                    67999**************9666666355544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6166.23
//
Query:       CDO71469.1  [L=298]
Description: hypothetical protein BN946_scf184909.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.018   14.4   0.0      0.023   14.0   0.0    1.2  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-06     0.023       1      72 [.     134     230 ..     134     289 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-06
                   EEEE-EEEEEEECETTECSSSGHHHHH...................STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.......HHHHHHHHHH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwl...................vppetaaealesgiktalksGtttvadmgattst.......giealleaae 71 
                   i+lP+l  aH+Hl   +l+++ +++++                    +p++++   ++ i++ ++ G+t+++++ ++++        +  +l++ ++
    CDO71469.1 134 ILLPALCHAHIHLDKCFLLDQ-CDELVtgnfsealrvtakakstflHNPDDLYDRGRRLITESVECGVTMMRAHVEVDEAvhlacvdAGLRLRKHFK 229
                   689**********87777777.44444555556669999*************************************876676776666666666666 PP

                   T CS
  Amidohydro_1  72 e 72 
                   +
    CDO71469.1 230 D 230
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2167.17
//
Query:       CDO71470.1  [L=359]
Description: hypothetical protein BN946_scf184909.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-25   89.4   0.0      4e-25   88.9   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    9.5e-17   61.4   0.0    1.8e-16   60.5   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   4.5e-29     4e-25       1     116 [.      59     181 ..      59     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 4.5e-29
      DIOX_N   1 iPvidlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp...sfrGysrlgeektdg............ 84 
                 iP+id+s++ d +++++va+++ + ++++Gf+y++n g+p+e++de+f+++++FF++P+e+K+   +++    +rGy ++g+ek+ +            
  CDO71470.1  59 IPIIDFSRFLDGSAKEEVAKAILDTFKRWGFVYLKNFGFPTEDVDEMFKWSKKFFSQPKEVKMLAPHPGvphINRGYIPPGVEKFTQsndsdevaqirh 157
                 9********999*****************************************************999766567************9556666666666 PP

      DIOX_N  85 kkldwkesfdlgtelpeddpagkplegpnqwP 116
                 k++d+ e f++g +        +++ g+n+w 
  CDO71470.1 158 KEPDVIENFSCGHD--------DSVLGKNIWL 181
                 66666666666655........4578888886 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0     2e-20   1.8e-16      28     100 ..     238     318 ..     224     319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 2e-20
                   SSSEEEEEEE-TT---EEEE...TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS.....EEEEEEEE- CS
  2OG-FeII_Oxy  28 aslltillqddvgglevfkd...gkwlrvppvdnslivniGdallflsngryksvlHrVlpvneger.....Rvsiayfie 100
                   ++ +t+l+qddvgglev++    g++++vppv++++ +n+Gd l+ +sn + +s+lHrV++    ++     R+si yf+ 
    CDO71470.1 238 YPSITLLFQDDVGGLEVENPdrpGEFISVPPVPGAVMINAGDFLQRWSNDQIRSALHRVRAPPGMKDgmtpdRYSIPYFCS 318
                   6789*************63356699**********************************9555555589999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2481.56
//
Query:       CDO71471.1  [L=337]
Description: hypothetical protein BN946_scf184909.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-25   87.8   0.0    1.3e-24   87.2   0.0    1.2  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.4e-19   70.5   0.0    2.1e-19   69.8   0.0    1.3  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   1.5e-28   1.3e-24       1     116 [.      12     137 ..      12     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.5e-28
      DIOX_N   1 iPvidlspl..sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp...sfrGysrlgeektdg.......... 84 
                 i v+d+ ++  ++++ ++++a+++ + ++++Gf+y+vnhg+pe+ i+ +f+++++FF+lP ++K+   ++p   ++rGys++g+ek+ +          
  CDO71471.1  12 ISVLDFGAFlaGSESMKQELATAMLDSFKRIGFVYLVNHGIPEANIRTMFQWSKRFFDLPAQVKLLAPHPPsgtHHRGYSAPGVEKVVQhvydpeslrd 110
                 7899***9997777889**************************************************9998889*************99********** PP

      DIOX_N  85 ...kkldwkesfdlgtelpeddpagkplegpnqwP 116
                    k +d+kesf+ g+e  +          pn+w 
  CDO71471.1 111 irvKAPDVKESFESGWEESK--------SMPNIWL 137
                 *****************544........4678885 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   2.4e-23   2.1e-19       3     101 .]     187     299 ..     185     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2.4e-23
                   -EEEEEEE-S-....-----..---EEEEEESSSEEEEEEE-TT---EEEE...TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GT CS
  2OG-FeII_Oxy   3 ellvlnyypph....pdpev..ilglgahtdaslltillqddvgglevfkd...gkwlrvppvdnslivniGdallflsngryksvlHrVl.pvneg 89 
                   ++l+l +yp       +  +  i+++ ah+d + +t+llqdd+gglev++    gk+++ p  d++livn+Gd ++ +sn   +s+ HrV+ p  + 
    CDO71471.1 187 NQLRLLHYPSVpvqdLE--DdkISRIDAHSDFGSITLLLQDDIGGLEVEDPnnpGKFISAPSIDGALIVNAGDFMMRWSNDLIRSTVHRVRaPPQR- 280
                   67777777777444433..1449*************************63356799***********************************55555. PP

                   GS.......EEEEEEEE-- CS
  2OG-FeII_Oxy  90 er.......Rvsiayfiep 101
                   ++       R+si yf+ p
    CDO71471.1 281 KTvngmapeRYSIPYFCAP 299
                   336899999*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2368.30
//
Query:       CDO71472.1  [L=345]
Description: hypothetical protein BN946_scf184909.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-10   39.8   0.1    9.7e-10   39.4   0.1    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   5.4e-14   9.7e-10       1     217 [.      46     327 ..      46     330 .. 0.58

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 5.4e-14
                    EEEE--GC.....GC..HHHH.HHHHCCT......CEEEEE--TTST...........S-GGCS--HHHCHHHHHHHCCTT............... CS
  Abhydrolase_6   1 vlllHGagssassWl..vapL.aallaag......vhvlapDlpGhG...........rsdpppldledladlaalldelaa.............g 63 
                    +l+ H +gs++++W     ++ a++++ +       + ++ D+  hG           r++ +  ++e             a              
     CDO71472.1  46 LLFFHCTGSHKEVWEpiIQSIfAKARGTHssalaiREAWTWDWQTHGeagrlnaaviaRTEKHIIAWEL------------AygikkfaateavfK 129
                    79************524445554444444666665355********94444444444444444444433............344444444444466 PP

                    TTSEEEEEETCHHHHHHHHHHCC..........EE.EEES-..----TTTS----TTHHHHHH..TT-CCCCHCCHS-HSCCCCHHHCCCCHCHCC CS
  Abhydrolase_6  64 ggpvvlvGHSlGGalalaaapla........lvvg.vlldppptalpagllaaalelllalla..llrllawlsreplprlfladedadaawrarl 148
                    g+  v++ HS GGa  l+    +        +  + +++++ ++ ++ +  + + e++l+l+   ++r+  w +re +  +++    a+ +w  ++
     CDO71472.1 130 GHTLVGISHSSGGATLLH---TTidgadsglQYKTlIIMET-SMLTRESVTHELDEQMLTLRNmiVRRKNSWITREEAK-RYFQ---ARLPWKKWD 217
                    8889**********9998...44444455553233677777.2344444477777777755552255558888765555.7777...777777777 PP

                    CGHHHHCCHHC.....HTTCCHHTT-TTGC.......................EEECTT-C.............HHHHCHHCCCH..STTEEETCE CS
  Abhydrolase_6 149 arlaallaglg.....llpaaawadlpvpl.......................lvlggeDp.............lvprllerlla..qagarlpvv 201
                     r ++ll   g       +++  +++ v+l                        + ++ Dp             ++p+ll+      ++ a + + 
     CDO71472.1 218 PRSLDLLVEHGlmeqtVQNPDGTTTTQVTLccspfqegaayhghgeihysgaeRL-ATLDPelpihliyvtpaeTMPELLRNSVLqlREYASV-QF 311
                    7777444433311111222333333333334444455554444444444444422.3555544444444433367778888777777788888.** PP

                    ...SSS-HHHHSHHHH CS
  Abhydrolase_6 202 lpgaGHlphleepdev 217
                    lp+ GHl+ +e+pd v
     CDO71472.1 312 LPNVGHLLIQENPDLV 327
                    ******99999*9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 2203.58
//
Query:       CDO71473.1  [L=345]
Description: hypothetical protein BN946_scf184909.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-96  320.3   0.4    6.5e-96  320.0   0.4    1.1  1  AOX             Alternative oxidase
  ------ inclusion threshold ------
       0.12   12.9   0.1       0.62   10.6   0.0    2.1  2  Peptidase_S66C  LD-carboxypeptidase C-terminal domain


Domain annotation for each model (and alignments):
>> AOX  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.0   0.4  7.2e-100   6.5e-96       1     215 []      59     292 ..      59     292 .. 0.99

  Alignments for each domain:
  == domain 1  score: 320.0 bits;  conditional E-value: 7.2e-100
         AOX   1 yseeelesvklahrepktlsDkvaiglvkllRwlaDlvtre...................kkleltekkylhRaifLetvAgvpgmvaavlrhLrslrl 80 
                 y+eeel+sv++ hre+kt+sDk+a+++v+llRw +D+++++                   +++ ++e ++l+R++fLe++A+vpgmvaa lrhLrslrl
  CDO71473.1  59 YTEEELRSVEVLHREAKTFSDKIAYNFVRLLRWSFDIASGYkhkplppdantktlddlrrDGYLMDEAQWLKRILFLESIAAVPGMVAAALRHLRSLRL 157
                 689*********************************************************9************************************** PP

         AOX  81 mkrdkgwirtlleeaenermHllvllklaeptlleRllvllaqgvffniflllYllsPrvahrlvgyleEeavvtYtqliedideGkleewekvkaPei 179
                 m+rd gwi+tlleeaenermHl+++++l++p+ l+R++v++aqgvf+n+f+l+Y++sP ++hr+v+ leEeav+tYt++i++i++G+l+ w++ +aPei
  CDO71473.1 158 MRRDCGWIHTLLEEAENERMHLMTFMTLKNPSPLFRAMVIAAQGVFYNAFFLCYIISPSTCHRFVAHLEEEAVITYTRCINEIEAGHLPLWTNLPAPEI 256
                 *************************************************************************************************** PP

         AOX 180 AlqYwklqeeatlrdvilliRaDEakhrdvnhtlan 215
                 A++Yw+l+e+a+++dv++++R+DE++hr vnhtla+
  CDO71473.1 257 AKDYWRLPEDAKFLDVVYAVRSDESTHRFVNHTLAS 292
                 **********************************95 PP

>> Peptidase_S66C  LD-carboxypeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     7e-05      0.62       8      56 ..     109     158 ..     108     178 .. 0.85
   2 ?   -0.9   0.0      0.25   2.3e+03      27      90 ..     312     338 ..     302     344 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7e-05
                     EHHHHHCCTTSTTS--.-TT..EEEEEE--TTHHHHHHHHHHHHCTSTTG CS
  Peptidase_S66C   8 nlsvlasllgtpylpe.kdlkgkILflEdvsespyridrmLtqlkeagvl 56 
                     n ++l +l    yl++ +++ ++ILflE++   p  +  +L++l+   ++
      CDO71473.1 109 NTKTLDDLRRDGYLMDeAQWLKRILFLESIAAVPGMVAAALRHLRSLRLM 158
                     5667777777778888899**********9999**********9987665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.25
                     ..EEEEEE--TTHHHHHHHHHHHHCTSTTGGG--EEEEEE--..G...CC...---HHHHHHHH CS
  Peptidase_S66C  27 kgkILflEdvsespyridrmLtqlkeagvldkvkGivlGrftkpeekeeeeekeeykealeevl 90 
                     kgk++ lE                                      ++  ++ ee++++leev 
      CDO71473.1 312 KGKVVGLER-------------------------------------EDAAKYVEETRKVLEEVA 338
                     444444444.....................................233334445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2578.74
//
Query:       CDO71474.1  [L=828]
Description: hypothetical protein BN946_scf184909.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-09   36.7   0.1    3.9e-09   35.9   0.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.018   15.2  16.0      0.034   14.3  16.0    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   4.3e-13   3.9e-09      40     165 ..     291     409 ..     272     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4.3e-13
  Fungal_trans  40 llailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektss..dralher...hhgvavrlarslgLhr 131
                   +l ilalG    + ++++s+ +  +     ++   ra+i+   + +   +s+ ++ +L++++ y+  +s  ++++ e+   ++g+a rla+ +gLhr
    CDO71474.1 291 FLIILALGVCVDQRRSHQSWVPDAE----RYHRLARAAICE--NSVIDEPSVDAVNALFYMARYLVLFSveKKDAIEYgwtVLGIASRLAVGIGLHR 381
                   399****************999998....468888999999..66666666******************975677777777**************** PP

  Fungal_trans 132 npsyvgkkslwklweeeaesrrRlwwaaFylDkt 165
                   n s+++      + +ee   r+ l w   ++D +
    CDO71474.1 382 NASRSK------VIPEELDKRKTLLWHMLVVDHR 409
                   *****9......66666***********999976 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  16.0   3.8e-06     0.034       2      28 ..      62      87 ..      61      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-06
                S-HHHHHCT---STSSSS-HHHHHCTH CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnl 28
                +C +Cr+ K KCd+ +P C++C k+++
  CDO71474.1 62 SCGECRRLKLKCDRVFP-CQSCCKRGC 87
                8****************.******994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5490.28
//
Query:       CDO71475.1  [L=224]
Description: hypothetical protein BN946_scf184909.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-23   81.3   0.2    7.2e-23   80.6   0.2    1.3  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase
    3.3e-13   49.5   0.4    7.6e-13   48.3   0.4    1.6  1  PNP_phzG_C       Pyridoxine 5'-phosphate oxidase C-terminal d
    3.6e-05   24.3   0.1    6.1e-05   23.6   0.1    1.4  1  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.042   13.4   0.0       0.06   12.9   0.0    1.2  1  Pyrid_ox_like    Pyridoxamine 5'-phosphate oxidase like


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.2   1.6e-26   7.2e-23       8      88 .]      52     131 ..      45     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.6e-26
                     HHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCHH CS
  Putative_PNPOx   8 flaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdge 88 
                     +++e++a+++ T+++ G P++++vllk  d+r g+vf+tn+ srk ++l++np++al f+++e  ++vr+ G+ae v+++e
      CDO71475.1  52 AVHEPEAMTICTATPAGVPSARVVLLKQADAR-GFVFYTNYTSRKSQELAANPHAALAFYWREVHKQVRVVGRAERVTREE 131
                     68899***************************.*********************************************986 PP

>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.4   1.7e-16   7.6e-13       9      43 .]     186     224 .]     180     224 .] 0.82

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.7e-16
  PNP_phzG_C   9 eeiEFWqgrpsRlHdRfrYereee..d..gkWkierLsP 43 
                  ++EFW g+psRlHdR+rY+r +   d   +WkierL+P
  CDO71475.1 186 ARVEFWLGKPSRLHDRVRYTRIPGspDdaPQWKIERLAP 224
                 68******************95533314589*******9 PP

>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.4e-08   6.1e-05       4      97 ..      40     125 ..      37     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
                      THHHHHHHHHHTT-GGGGEEEEEEE-T.TS-EEEEEEE---B-TT...SS-.EEEEEETTSHHHHHHH.H--EEEEEEEETTTTEEEEEEEEEE CS
  Pyridox_oxase_2   4 WrsllesalkknkkkkstefqlaTvdeeegkPrvRtvvfRgfleekkeesdvltfttDvrseKvkqlessnaaveavfylketreQfRisGkaf 97 
                      +r+ +++  ++   ++ + +++ T + ++g P++R v ++   +      + + f t   s+K ++l+  n+++ ++fy  e+++Q R+ G+a 
       CDO71475.1  40 FRAWFTAVSTQGAVHEPEAMTICTAT-PAGVPSARVVLLKQADA------RGFVFYTNYTSRKSQELA-ANPHAALAFYWREVHKQVRVVGRAE 125
                      55556655555567777888888888.57889999998776544......4589**************.8*********************986 PP

>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.06      42      87 ..      84     129 ..      53     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
  Pyrid_ox_like  42 dlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvsvsGtaevved 87 
                     + f+t+ +s+k +e+++++++ laf  ++ +k v v G+ae v+ 
     CDO71475.1  84 GFVFYTNYTSRKSQELAANPHAALAFYWREVHKQVRVVGRAERVTR 129
                    35699************************************97764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1650.41
//
Query:       CDO71476.1  [L=1204]
Description: hypothetical protein BN946_scf184909.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-16   60.5   3.0     0.0019   18.4   0.0    5.5  5  Kelch_6      Kelch motif
    2.2e-15   56.2   1.4    0.00082   19.3   0.0    4.7  4  Kelch_5      Kelch motif
    8.9e-15   54.0   0.2    0.00013   21.4   0.0    4.7  5  Kelch_1      Kelch motif
      2e-14   52.9   0.1     0.0073   16.2   0.0    4.8  4  Kelch_2      Kelch motif
      3e-13   49.7   4.0    3.3e-07   30.4   0.0    6.9  7  Kelch_3      Galactose oxidase, central domain
    2.4e-12   46.7   3.9     0.0026   17.7   0.1    4.9  4  Kelch_4      Galactose oxidase, central domain
  ------ inclusion threshold ------
        6.3    6.6  11.1         11    5.9  11.1    1.3  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te


Domain annotation for each model (and alignments):
>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.4e-07    0.0019       4      47 ..      24      68 ..      21      73 .. 0.91
   2 !   17.6   0.0   1.3e-06    0.0034       1      47 [.      75     129 ..      75     132 .. 0.94
   3 !   14.9   0.0   9.5e-06     0.024       2      41 ..     139     178 ..     138     186 .. 0.88
   4 ?    4.7   0.1     0.015        39       7      43 ..     308     344 ..     303     347 .. 0.79
   5 ?   -2.8   0.0       3.5     9e+03      12      37 ..     365     392 ..     361     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.4e-07
     Kelch_6  4 ghslvsvggkiYifGGytds.spylnkvwvydpetksWeqlpplp 47
                g s+++vg+k Y++GG+  s  + +++++ +d+et +We++++ p
  CDO71476.1 24 GASTTVVGSKMYLYGGRLVSeRKMVSDIYMFDLETFKWERVAQNP 68
                67999****************88889***************9766 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
     Kelch_6   1 praghslvsvggkiYifGGytds........spylnkvwvydpetksWeqlpplp 47 
                 +r++hs+ ++ +++ ifGG               ln+v ++d+ +++W + +plp
  CDO71476.1  75 ARYFHSADTWRNHLIIFGGMAIKpqsenpedLCVLNDVRLFDLTNRRWLPAAPLP 129
                 599*****************9889***99999999**************999998 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 9.5e-06
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWe 41 
                 r++h + +  ++++i+GG++ ++ +l++v+++d+ t+ W 
  CDO71476.1 139 RYAHLSSVTADRLFIIGGQDLANVWLDDVYIFDLNTRMWI 178
                 677777778899********99*****************6 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.015
     Kelch_6   7 lvsvggkiYifGGytdsspylnkvwvydpetksWeql 43 
                  ++ g ++ ++G y  ++  + ++w +d+++++W+++
  CDO71476.1 308 GAILGTYFIVAGTYLSQTYQSFSIWALDLINMTWSRI 344
                 567788899999998776666678**********998 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 3.5
     Kelch_6  12 gkiYifGGytds..spylnkvwvydpet 37 
                 +k+++fG +++   + y ++++ +d  t
  CDO71476.1 365 NKFVVFGNRNGNlvEDYNRRLLSWDHVT 392
                 6778888787767788888888888776 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.2e-07   0.00082       1      42 []      18      59 ..      18      59 .. 0.96
   2 !   13.3   0.0   2.4e-05     0.061       1      24 [.      72      95 ..      72     111 .. 0.92
   3 !   17.9   0.0   8.7e-07    0.0022       1      41 [.     135     174 ..     135     175 .. 0.94
   4 ?    0.2   0.4       0.3   7.7e+02       2      11 ..    1058    1067 ..    1057    1070 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.2e-07
     Kelch_5  1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlpsf 42
                +Pp + g+++ +v++k+Y+yGG+  ++ +  +d+y +dl++f
  CDO71476.1 18 VPPKLVGASTTVVGSKMYLYGGRLVSERKMVSDIYMFDLETF 59
                6999********************88**************99 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.4e-05
     Kelch_5  1 iPppRaghcavtvsekiYvyGGkv 24
                iP++R+ h+a t+ + ++++GG+ 
  CDO71476.1 72 IPQARYFHSADTWRNHLIIFGGMA 95
                7*********************95 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 8.7e-07
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 iP++R+ h + +  + ++++GG +   +   ddvy++dl++
  CDO71476.1 135 IPNARYAHLSSVTADRLFIIGGQDL-ANVWLDDVYIFDLNT 174
                 7***********************8.7777********987 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.3
     Kelch_5    2 PppRaghcav 11  
                  P++R+gh+++
  CDO71476.1 1058 PTSRYGHHSA 1067
                  9*******97 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.3e-08   0.00013       3      43 ..      23      65 ..      21      68 .. 0.94
   2 !   11.7   0.0   5.8e-05      0.15       1      46 []      75     129 ..      75     129 .. 0.96
   3 !   15.0   0.0   5.4e-06     0.014       1      39 [.     138     177 ..     138     179 .. 0.90
   4 ?   -1.6   0.0      0.82   2.1e+03      28      42 ..     330     344 ..     327     346 .. 0.87
   5 ?   -2.5   0.0       1.5   3.9e+03      31      45 ..    1028    1042 ..    1028    1043 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.3e-08
                BSEEEEEETTEEEEEEEBCS..SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1  3 agagavvvggkiYviGGsdg..gnalssvevyDpetntWrelp 43
                 ga+ +vvg k+Y  GG+     + +s+++++D+et +W++++
  CDO71476.1 23 VGASTTVVGSKMYLYGGRLVseRKMVSDIYMFDLETFKWERVA 65
                58999************************************98 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.8e-05
                 BBBSEEEEEETTEEEEEEEBCS.........SSBEEEEEEEETTTTEEEEECCCS CS
     Kelch_1   1 aragagavvvggkiYviGGsdg.........gnalssvevyDpetntWrelpsMp 46 
                 ar+ ++a + ++++ ++GG+            + l++v  +D+++  W +++++p
  CDO71476.1  75 ARYFHSADTWRNHLIIFGGMAIkpqsenpedLCVLNDVRLFDLTNRRWLPAAPLP 129
                 6999*****************9******************************986 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 5.4e-06
                 BBBSEEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg.gnalssvevyDpetntW 39 
                 ar+ + + v  +++++iGG+d  +  l++v+++D+ t  W
  CDO71476.1 138 ARYAHLSSVTADRLFIIGGQDLaNVWLDDVYIFDLNTRMW 177
                 57888889999***********************999766 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.82
                 EEEEEETTTTEEEEE CS
     Kelch_1  28 svevyDpetntWrel 42 
                 s++++D+ + tW+++
  CDO71476.1 330 SIWALDLINMTWSRI 344
                 99**********986 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.5
                  EEETTTTEEEEECCC CS
     Kelch_1   31 vyDpetntWrelpsM 45  
                  +y+p + + r++p++
  CDO71476.1 1028 RYSPSQSQQRKMPEL 1042
                  7************87 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.031       2      47 ..      22      66 ..      21      68 .. 0.84
   2 !   16.2   0.0   2.9e-06    0.0073       2      46 ..      76     126 ..      75     129 .. 0.91
   3 !   16.2   0.0   2.9e-06    0.0075       1      42 [.     138     177 ..     138     179 .. 0.97
   4 ?   -1.9   0.0       1.5   3.8e+03      12      28 ..     365     378 ..     358     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
     Kelch_2  2 rgghsssvpggkiyvvGGahtdnpnls.ssdvhvldlekhvWeevtp 47
                ++g s++v+g+k+y++GG+    + ++  sd++ +dle+ +We+v++
  CDO71476.1 22 LVGASTTVVGSKMYLYGGR--LVSERKmVSDIYMFDLETFKWERVAQ 66
                6899***************..5555544789999********99976 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.9e-06
     Kelch_2   2 rgghsssvpggkiyvvGGa......htdnpnlsssdvhvldlekhvWeevt 46 
                 r+ hs+ ++++ ++++GG       ++++++++ +dv+ +dl  ++W + +
  CDO71476.1  76 RYFHSADTWRNHLIIFGGMaikpqsENPEDLCVLNDVRLFDLTNRRWLPAA 126
                 778********************************************6655 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 2.9e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42 
                 +r+ h ssv  ++++++GG   d+ n + +dv+++dl+++ W
  CDO71476.1 138 ARYAHLSSVTADRLFIIGGQ--DLANVWLDDVYIFDLNTRMW 177
                 69******************..******************** PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.5
     Kelch_2  12 gkiyvvGGahtdnpnls 28 
                 +k +v+G +   n+nl+
  CDO71476.1 365 NKFVVFGNR---NGNLV 378
                 899******...77765 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.56   1.4e+03      33      48 ..      14      29 ..       8      30 .. 0.89
   2 !   30.4   0.0   1.3e-10   3.3e-07       1      46 [.      31      81 ..      31      81 .. 0.95
   3 ?    3.2   0.0     0.043   1.1e+02      18      41 ..     105     132 ..      85     145 .. 0.72
   4 ?    3.1   0.0     0.048   1.2e+02       2      31 ..     149     177 ..     148     192 .. 0.84
   5 ?    4.8   0.3     0.014        36      20      35 ..     330     353 ..     317     365 .. 0.74
   6 ?   -2.9   0.0       3.7   9.6e+03      17      43 ..     672     701 ..     671     701 .. 0.80
   7 ?    0.6   0.0       0.3   7.6e+02      32      46 ..    1050    1066 ..    1040    1067 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.56
     Kelch_3 33 eiaslppaRaghaata 48
                ++++ pp  +g+++t+
  CDO71476.1 14 TTGDVPPKLVGASTTV 29
                679***********97 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.3e-10
     Kelch_3  1 gdrlyifGGlgddgqdrlndvyvydldtntWaei.....aslppaRaghaa 46
                g ++y++GG+  + ++ ++d y++dl+t +W+++     ++ p+aR++h+a
  CDO71476.1 31 GSKMYLYGGRLVSERKMVSDIYMFDLETFKWERVaqnpeDDIPQARYFHSA 81
                679*****************************999999999********96 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.043
     Kelch_3  18 l....ndvyvydldtntWaeiaslppaR 41 
                 +    ndv ++dl +  W   a+lpp+ 
  CDO71476.1 105 DlcvlNDVRLFDLTNRRWLPAAPLPPDS 132
                 25556*******************9964 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.048
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntW 31 
                 drl+i+GG +   +  l dvy +dl+t  W
  CDO71476.1 149 DRLFIIGGQDL-ANVWLDDVYIFDLNTRMW 177
                 89********6.777779999999998644 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.014
     Kelch_3  20 dvyvydldtntWaei........a 35 
                 + +++dl + tW +i        +
  CDO71476.1 330 SIWALDLINMTWSRIdpgsalasG 353
                 689***********9764444333 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3.7
     Kelch_3  17 rlndvyvydldtn.tWaei..aslppaRag 43 
                 +l+d+ ++ +  + +++++  +s+  +R++
  CDO71476.1 672 SLSDLQEFGVPHGqSIKRVsdGSMVLPRMN 701
                 678999998888888888877888889996 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.3
     Kelch_3   32 aei..aslppaRaghaa 46  
                  +++  +++p+ R+gh++
  CDO71476.1 1050 QTLdaPPSPTSRYGHHS 1066
                  3346688999*****97 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06    0.0026       4      47 ..      24      67 ..      23      70 .. 0.89
   2 !    7.4   0.2    0.0018       4.5      26      49 .]     107     130 ..      75     130 .. 0.70
   3 !   17.7   0.1     1e-06    0.0026       7      41 ..     144     177 ..     138     184 .. 0.83
   4 ?    0.0   0.1      0.34   8.8e+02      29      45 ..     329     347 ..     312     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
     Kelch_4  4 ghsatsipdgtiylfGGrgedg.tllndlylldlstntWrrlgsl 47
                g+s+t+++  + yl+GGr     + ++d+y +dl+t +W+r+++ 
  CDO71476.1 24 GASTTVVG-SKMYLYGGRLVSErKMVSDIYMFDLETFKWERVAQN 67
                78999996.799******99889*******************764 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0018
     Kelch_4  26 tllndlylldlstntWrrlgslPs 49 
                  +lnd+ l+dl++++W + ++lP+
  CDO71476.1 107 CVLNDVRLFDLTNRRWLPAAPLPP 130
                 57999999********99999997 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 1e-06
     Kelch_4   7 atsipdgtiylfGGrgedgtllndlylldlstntW 41 
                 + ++  ++++++GG+   +  l+d+y++dl t+ W
  CDO71476.1 144 SSVT-ADRLFIIGGQDLANVWLDDVYIFDLNTRMW 177
                 4444.79**************************99 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.34
     Kelch_4  29 ndlylldlstntWrrl..g 45 
                   +++ldl + tW+r+  g
  CDO71476.1 329 FSIWALDLINMTWSRIdpG 347
                 46799**********9652 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  11.1    0.0041        11     156     240 ..    1093    1195 ..    1008    1200 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0041
                   X.............XXXXX...XXXXXXXXXX..XX...XXXXX.XXX.XXXXXXXXXXXXXX..XXXX.XXXXXXX....XXXXXXX..XXXXXX CS
  SRP-alpha_N  156 a.............sddstpsatpetsrpstp..sg...lltakeagptaedvsrrarkkankkrssag.assgdeakasksskkkkkkpkkkgkk 232 
                   +             +d +++s+++++s +s +  ++   +l+   +g ++++ +r+++++a+++ +++  +  +d+ak+++++ k +k+ + k+k 
   CDO71476.1 1093 SssgkvgfgklfgrGDRDKESKKSASSGSSVQpsNQsvmSLDLGPSGLSKAEEKRLKKEAARAR-TERLaQDLADKAKKRAEAAKAAKSARVKEKT 1187
                   0222223333343322222222211111111122111233444434554555555555555533.3333244455555555555555555667777 PP

                   XXXXXXXX CS
  SRP-alpha_N  233 aRvWdadg 240 
                   ++ W+++g
   CDO71476.1 1188 KKPWEEEG 1195
                   88999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 7311.80
//
Query:       CDO71477.1  [L=393]
Description: hypothetical protein BN946_scf184909.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00047   20.1   1.2    0.00078   19.4   1.2    1.4  1  zf-CCHH          PBZ domain
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.091   12.9   0.0    1.9  1  zf-CRD           Cysteine rich domain with multizinc binding 
       0.38   11.1   5.3          6    7.3   1.4    2.3  2  Lustrin_cystein  Lustrin, cysteine-rich repeated domain


Domain annotation for each model (and alignments):
>> zf-CCHH  PBZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.2   1.3e-07   0.00078       1      25 [.     291     319 ..     291     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.3e-07
     zf-CCHH   1 RPpCkYGkkCYRk.NpqHfqefsH...Pg 25 
                 RP+C+ G++C R+   +H++ef+H   P+
  CDO71477.1 291 RPDCPEGSQCPRQkDHAHAKEFNHliaPP 319
                 9*********888799********88844 PP

>> zf-CRD  Cysteine rich domain with multizinc binding regions
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.091      79     117 ..     168     205 ..     157     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
      zf-CRD  79 eevlegneveqkilkdylaekgltlqdvlkevlekldkg 117
                  ++++gn+ve +i+ dyl+ +gl+ +++++ev ++l++ 
  CDO71477.1 168 YDCFDGNTVEVDIMLDYLSAQGLSPRHIYREV-RHLRSA 205
                 479**************************995.444443 PP

>> Lustrin_cystein  Lustrin, cysteine-rich repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.4     0.001         6      14      37 ..     152     175 ..     145     180 .. 0.77
   2 ?    5.1   0.1    0.0051        30      23      33 ..     291     301 ..     288     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.001
  Lustrin_cystein  14 gqp.vtCspssssCPsgysChfsst 37 
                      g+p + Cs  +ssC + y C  ++t
       CDO71477.1 152 GHPpAPCSG-QSSCGEVYDCFDGNT 175
                      44459***9.8*********77765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0051
  Lustrin_cystein  23 sssCPsgysCh 33 
                      + +CP+g +C 
       CDO71477.1 291 RPDCPEGSQCP 301
                      579*******3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2812.69
//
Query:       CDO71478.1  [L=874]
Description: hypothetical protein BN946_scf184909.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 5349.24
//
Query:       CDO71479.1  [L=567]
Description: hypothetical protein BN946_scf184909.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-24   84.7   0.0    7.7e-24   84.2   0.0    1.3  1  Lipase_3       Lipase (class 3)
      8e-07   29.3   0.0    1.8e-06   28.2   0.0    1.6  1  FHA            FHA domain
     0.0082   16.8   0.1     0.0082   16.8   0.1    2.4  2  Abhydrolase_6  Alpha/beta hydrolase family
     0.0095   15.7   0.0      0.014   15.1   0.0    1.2  1  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.056   13.1   0.0      0.098   12.3   0.0    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.098   12.6   0.1       0.17   11.8   0.1    1.3  1  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   2.6e-27   7.7e-24       3     140 ..     101     240 ..      99     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 2.6e-27
                 EE----..------------EEE-HHHH-G...TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS--- CS
    Lipase_3   3 afRGte..sakdwltdldfslteakellek...eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenekkk 96 
                 +  Gt+  + ++ ltd++f l ++++ l     + ++vh+gf      ++++++l+e+krl++++   +++  GHSLGgalA L +l +  + ++ +  
  CDO71479.1 101 SHEGTDpvQFESDLTDINFFLDDLDTSLFPgvtHAIQVHNGFAAEHA-KTASTILAEVKRLISQKGAKQVIAIGHSLGGALAELDSLFFTLQLPS-SIH 197
                 55666666666667777777777777655577789********9999.9*****************************************99977.9** PP

                 EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3  97 vtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                 v++vt+G+Prvgn efa+++ds++++ ++r+ n++D+vP +p+ 
  CDO71479.1 198 VKAVTYGTPRVGNPEFAQMIDSKVPD-FVRINNEKDLVPIVPGR 240
                 **************************.**************985 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.9e-10   1.8e-06      33      69 .]     517     553 ..     499     553 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.9e-10
                 EEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA  33 kvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 k +++Dl S+nGt vN++ i+++++ eL  gdvi++G
  CDO71479.1 517 KPFIIDLESTNGTIVNDETIPTSRYFELMAGDVIKFG 553
                 569*********************************8 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.7e-06    0.0082      54      87 ..     151     196 ..      69     249 .. 0.72
   2 ?   -0.4   0.8       0.5   1.5e+03     128     141 ..     355     391 ..     288     479 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                    HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC........... CS
  Abhydrolase_6  54 aalldelaa.....gggpvvlvGHSlGGalalaaapla..........l 87 
                    + +l+e++      g+++v+++GHSlGGala +               +
     CDO71479.1 151 STILAEVKRlisqkGAKQVIAIGHSLGGALAEL---DSlfftlqlpssI 196
                    3333333336667899*************9988...4444444444443 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.5
                    H.........S-HSCCCCHHH.......C.......C CS
  Abhydrolase_6 128 e.........plprlfladed.......a.......d 141
                    e         +++r++++d d       +       d
     CDO71479.1 355 EgsyrdddrsLRDRDLYRDRDrlededrYkkrergyD 391
                    1122222233333344443333222212122222220 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.7e-06     0.014      66     131 ..     144     209 ..      93     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.7e-06
       PGAP1  66 ldqaeylndaIkyIlslysssekeptsviliGHSmGGivara.altlknyikqsvn.tiltlasPhal 131
                  ++a+    +++++ +l   s+k  ++vi iGHS+GG +a +  l+     ++s++ + +t ++P + 
  CDO71479.1 144 AEHAKTASTILAEVKRLI--SQKGAKQVIAIGHSLGGALAELdSLFFTLQLPSSIHvKAVTYGTPRVG 209
                 456666666777777777..78999***************8622333333455554245677777655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05     0.098      58      87 ..     152     181 ..     101     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
                    HHHHHHHHHHHHCTTSSEEEEEETHHHHHH CS
  Abhydrolase_1  58 svaddldrildalgddkltlvGhSmGGmia 87 
                    ++ + ++r+  + g ++++ +GhS+GG++a
     CDO71479.1 152 TILAEVKRLISQKGAKQVIAIGHSLGGALA 181
                    57788899999****************997 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.8e-05      0.17      40      74 ..     148     182 ..     132     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.8e-05
     UPF0227  40 edpqqalkeleklvaelgddnillvGssLGGyyat 74 
                 +  + +l+e+++l+++ g+++++ +G sLGG +a+
  CDO71479.1 148 KTASTILAEVKRLISQKGAKQVIAIGHSLGGALAE 182
                 45567899***********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3860.64
//
Query:       CDO71480.1  [L=383]
Description: hypothetical protein BN946_scf184909.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   20.2   5.6       0.36   11.4   2.2    2.9  2  zf-C2H2    Zinc finger, C2H2 type
     0.0017   19.0   4.4        1.9    9.5   0.1    2.8  2  zf-C2H2_4  C2H2-type zinc finger
  ------ inclusion threshold ------
      0.023   15.1   2.9       0.58   10.7   0.5    2.9  2  zf-H2C2_2  Zinc-finger double domain
        8.7    6.8   6.3        3.3    8.1   0.9    2.6  2  PBP1_TM    Transmembrane domain of transglycosylase PBP1 at N


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   2.2   7.9e-05      0.36       1      23 []     288     312 ..     288     312 .. 0.98
   2 !    9.1   0.1   0.00041       1.8       5      21 ..     353     369 ..     352     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.9e-05
                 EEETTTT..EEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCg..ksFkrksnLkrHirtH 23 
                 ykCp+C+  ++ kr+ +++rHir+H
  CDO71480.1 288 YKCPYCDhvQKNKRSPDMERHIRSH 312
                 9***********************9 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00041
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFkrksnLkrHir 21 
                 +C++ F+r + LkrH r
  CDO71480.1 353 GCHEDFSRMDALKRHWR 369
                 7**************98 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   1.6    0.0005       2.3       1      23 [.     288     312 ..     288     313 .. 0.68
   2 !    9.5   0.1   0.00043       1.9       6      22 ..     354     370 ..     352     371 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0005
   zf-C2H2_4   1 fkCpiC...gksFsskka..LlrHlkth 23 
                 +kCp+C   +   ++k++  + rH+++h
  CDO71480.1 288 YKCPYCdhvQ---KNKRSpdMERHIRSH 312
                 89****5422...23333568******9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00043
   zf-C2H2_4   6 CgksFsskkaLlrHlkt 22 
                 C++ Fs+ +aL+rH+++
  CDO71480.1 354 CHEDFSRMDALKRHWRN 370
                 ***************85 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00013      0.58      10      21 ..     283     294 ..     280     298 .. 0.91
   2 ?    3.5   0.1     0.025   1.1e+02       2      10 ..     305     313 ..     304     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
   zf-H2C2_2  10 tgekpyeCplCd 21 
                 tg++ y+Cp+Cd
  CDO71480.1 283 TGPNAYKCPYCD 294
                 89*********8 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.025
   zf-H2C2_2   2 LrrHirkHt 10 
                  +rHir+H 
  CDO71480.1 305 MERHIRSHF 313
                 68******6 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4       0.2   9.1e+02      18      53 ..      26      64 ..      10      84 .. 0.59
   2 ?    8.1   0.9   0.00073       3.3      19      69 ..     172     226 ..     166     233 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
     PBP1_TM 18 akparkkasrrrrrdddyddeyddeedDdd...dddeee 53
                ++ + +++s  +   ++y d+ +  + D d    d +++
  CDO71480.1 26 THVEPQRPSPTSSASQEYCDDASSTSSDSDsacSDSDDD 64
                555566666666666777666666666665333333333 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00073
     PBP1_TM  19 kparkkasrrrrrdddy....ddeyddeedDdddddeeeevprkgkkkkpprkkr 69 
                 +++r +++r + + d y    +de d ++ Dd  +de  ++pr + +k p  ++r
  CDO71480.1 172 ENTRTRRTRASFQRDAYsfdsEDEADMSSGDDASEDEYVPSPRISSRKLPTSSRR 226
                 4555566665555565511114445555555555555566677755555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2672.17
//
Query:       CDO71481.1  [L=442]
Description: hypothetical protein BN946_scf184909.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-68  230.8   0.0    2.3e-68  230.5   0.0    1.1  1  Pkinase         Protein kinase domain
    1.3e-35  123.0   0.0    6.5e-35  120.7   0.0    1.8  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00054   19.4   0.0     0.0013   18.1   0.0    1.6  1  Kinase-like     Kinase-like
      0.005   15.7   0.0     0.0082   15.0   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.081   12.0   0.1       0.14   11.2   0.1    1.3  1  Seadorna_VP7    Seadornavirus VP7
        0.1   12.5   0.0       0.18   11.7   0.0    1.3  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5   0.0   7.6e-72   2.3e-68       2     264 .]     122     425 ..     121     425 .. 0.90

  Alignments for each domain:
  == domain 1  score: 230.5 bits;  conditional E-value: 7.6e-72
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                 ++l++lG+G+ G+V k+ +  tg i+A K++  + + + + k++lrE++i++ +++++i+ +y++f ++ ++++++ey+++g+l+ ++++ g ++ + +
  CDO71481.1 122 KDLKELGQGNGGSVKKVEHLPTGTIMAKKIVLIDAKPSVR-KQILRELQIMHDCHSDYIISFYGAFISDPNICICMEYMDKGSLDGIYKKIGPIDIDVV 219
                 5789*************************99999888877.69******************************************************** PP

                 HHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 101 kkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfs 198
                  k+a  +legl yl+  ++iiHrD+Kp+NiL+++kg++Ki+DFG++ el +s  +++fvgts+Y++PE +++ +y+ k+DvWslG+ l+el  g+ pf+
  CDO71481.1 220 GKVALAVLEGLTYLYdVHRIIHRDIKPSNILFNSKGQIKICDFGVSGELINSI-ADTFVGTSTYMSPERIQGAQYTVKSDVWSLGISLIELALGRFPFA 317
                 ***************7788********************************99.********************************************* PP

                 TSSHHHHHHHHHHTHHHHHHHCT........SHH...HHHTTS.............................................-HHHHHHHHHH CS
     Pkinase 199 gekgkekvekeldqlekilkilg........etkeklpeasei.............................................seeakdllkkl 244
                 +++++++  ++++    +l   +        +        ++                                              ++ea d+++++
  CDO71481.1 318 DSESDDSDLSDFEG---TLSPSRpnplslpkQ--------TKEqrdkkkkrkskgvslqgggmtmsilellqhivnepaprltpegrfPKEAEDFVDSC 405
                 77777654454444...444444333434332........22233444566899********************************************* PP

                 T-SSGCCSTTHHHHHTSGGG CS
     Pkinase 245 lkkdpkkRltaeellqhpyl 264
                 l kdp +R t +ell+hp++
  CDO71481.1 406 LLKDPIQRKTPKELLKHPWI 425
                 *******************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   2.2e-38   6.5e-35       4     211 ..     124     321 ..     121     344 .. 0.90
   2 ?   -0.1   0.0      0.16   4.7e+02     221     256 ..     385     420 ..     369     422 .. 0.78

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 2.2e-38
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                   k+lG+G+ G+V + +       + +  a K++  +a+ + ++++l+e++im++++ + i++++g+ +++ +++i +ey+++G+L+   +k    +++
   CDO71481.1 124 LKELGQGNGGSVKKVEHL----PTGTIMAKKIVLIDAKPSVRKQILRELQIMHDCHSDYIISFYGAFISDPNICICMEYMDKGSLDGIYKKI--GPID 215
                  689**********99998....6777888888899999999*********************************************999887..9*** PP

                  HHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEi 198
                  ++ + ++al v +G+ yL + + ++Hrd+   N+L +++ ++ki+DfG++ ++      + +++      +m+pE ++  ++t+ksDvWs G+ l+E+
   CDO71481.1 216 IDVVGKVALAVLEGLTYLYDVHrIIHRDIKPSNILFNSKGQIKICDFGVSGEL----INSIADTFVGTSTYMSPERIQGAQYTVKSDVWSLGISLIEL 309
                  ******************986559***************************99....3344455667789***************************9 PP

                  HTTSSGTTTTSHH CS
  Pkinase_Tyr 199 ftlgespypglkn 211
                  +  g+ p+++ ++
   CDO71481.1 310 AL-GRFPFADSES 321
                  87.9999998754 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
                  TEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 221 gkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                    rl+     p+e  +++ +c+ +dp +R t +el+
   CDO71481.1 385 APRLTPEGRFPKEAEDFVDSCLLKDPIQRKTPKELL 420
                  457777788999*****************9988886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.5e-07    0.0013     163     255 ..     237     321 ..     224     333 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.5e-07
  Kinase-like 163 kglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlate 255
                  + ++h ++++ n+l++ kg++++ +f+       ++ l ++++ +f    +  s  +    + +++t k d+W lG++   ++    P+   ++
   CDO71481.1 237 HRIIHRDIKPSNILFNSKGQIKICDFGV------SGELiNSIADTFVGTSTYMSPER---IQGAQYTVKSDVWSLGISLIELALGRFPFADSES 321
                  569***********************74......34443788888887777777555...5679***************999999999877665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.7e-06    0.0082     315     397 ..     226     299 ..     221     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     +++g+  L+   +i+HrDi   Nil++     ++ +  + D+ +  el +    s a + +GT  +m+ e ++g + ++  D+
      CDO71481.1 226 VLEGLTYLYDVHRIIHRDIKPSNILFN-----SKGQIKICDFGVSGELIN----SIADTFVGTSTYMSPERIQGAQYTVKSDV 299
                     7789999**99****************.....556677888888888873....44457999999999999998888887776 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.7e-05      0.14     147     187 ..     226     262 ..     210     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.7e-05
  Seadorna_VP7 147 ivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   ++ gl  L d+h     ++h D++p+n++ ++ G++k+ D 
    CDO71481.1 226 VLEGLTYLYDVH----RIIHRDIKPSNILFNSKGQIKICDF 262
                   677888888998....89********************995 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.9e-05      0.18     166     194 ..     237     263 ..     219     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.9e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++++H+D++p N+l++  +g++  + Df+
  CDO71481.1 237 HRIIHRDIKPSNILFN-SKGQI-KICDFG 263
                 689*************.77777.466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3075.41
//
Query:       CDO71482.1  [L=753]
Description: hypothetical protein BN946_scf184909.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.7e-133  444.8   0.0   6.5e-133  444.3   0.0    1.1  1  Peptidase_M3    Peptidase family M3
  ------ inclusion threshold ------
      0.061   13.0   0.2        0.1   12.2   0.2    1.3  1  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.3   0.0  7.3e-137  6.5e-133       3     456 ..     300     747 ..     298     748 .. 0.97

  Alignments for each domain:
  == domain 1  score: 444.3 bits;  conditional E-value: 7.3e-137
                   HC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Peptidase_M3   3 kespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkke 99 
                   k ++++e+R+ aye + ++ a       n++++++ l lr++ Akllgy++ a++  e km k+ + v++fl +l++klrp++ k  + l +lkk e
    CDO71482.1 300 KFAENPETRRIAYERFENRLA------INAPIMDKFLDLRRQIAKLLGYPTWADYITEVKMVKSAKGVKEFLTDLEQKLRPVGLKDRETLLALKKRE 390
                   6689***************88......58***********999***************************************************999 PP

                   ...CT-S..SS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET...TT-EEEEEEE CS
  Peptidase_M3 100 ...lgle..gelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvde..ilsegligeiy 189
                       gl+  ge++ wD++YY++k +ee+ +ld++ +keyfp+  v+  +l+++++L+G+kfve+k++   +wh++V++++V+++  + ++g+ig+ y
    CDO71482.1 391 heeKGLPfdGEFYLWDYRYYDRKFLEESLNLDDQLVKEYFPVSIVVPAILDIYQNLLGVKFVEIKGE---TWHPEVQQFAVWEKdaKDESGFIGYCY 484
                   888677778*****************************************************88776...************9988999******** PP

                   EEEC--TTS-SS-EEEEEE--B..TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT-S-CCCCCHHHHHHH CS
  Peptidase_M3 190 lDlyerkgKrggAasfglvksr..edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgtnvpidfvElpSqlmE 284
                   lDl++r +K+++Aa   l ++   edg+r++p+++++ N +kp+ +kP+L+ +d+v t+fHE+GH++H lls+t++++++gtnv+ dfvE+pSq++E
    CDO71482.1 485 LDLFPRASKYSHAAVWPLLPGYdkEDGSRSYPLTAMVANLAKPTPQKPALMRHDDVVTFFHEMGHVFHGLLSKTKFARFHGTNVAGDFVEAPSQMLE 581
                   ********************99766************************************************************************ PP

                   HGGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHHCTTSCTTBTTSSGGGC-CC CS
  Peptidase_M3 285 nlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqasFgh 381
                   n++ ep+vl+++s+hyet++++ +el+ek+ik++ vn +l+ lrql+fa+fd+++H+ +e+++      ++ ++e+r+++++++     a q +F+h
    CDO71482.1 582 NWCFEPKVLEKMSSHYETKKPLDAELIEKIIKSRYVNVGLFYLRQLFFANFDLKVHTDQEPTD-----YTKLWNEMRENISLVKGRNLGAGQGTFNH 673
                   *********************************************************999966.....799************************** PP

                   CHTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHC CS
  Peptidase_M3 382 lfahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkal 456
                   + a+gY+a+YY+y y+ v+a+d++ ++f+ dpl++  G+ryr++iL  Ggs+d+++ lk+flgrep+++a++k+l
    CDO71482.1 674 I-AGGYDAGYYGYTYSLVFAADMYATVFKPDPLDPVRGQRYREKILLPGGSRDEIDSLKDFLGREPNSEAFIKEL 747
                   *.7*******************************999**********************************9975 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   1.2e-05       0.1      19      44 ..     536     561 ..     517     565 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
  Peptidase_M50B  19 pfkllvvffHElGHalaalLtGgrvk 44 
                         +v+ffHE+GH++  lL   ++ 
      CDO71482.1 536 RHDDVVTFFHEMGHVFHGLLSKTKFA 561
                     456799***********999866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5576.61
//
Query:       CDO71483.1  [L=631]
Description: hypothetical protein BN946_scf184909.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-37  127.1   4.5    4.9e-23   81.7   0.0    2.8  3  RIO1        RIO1 family
  ------ inclusion threshold ------
        5.5    7.4  11.8        2.4    8.6   8.1    2.3  2  MFMR_assoc  Disordered region downstream of MFMR


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   5.5e-27   4.9e-23      66     143 ..     230     309 ..     225     312 .. 0.94
   2 !   46.5   0.0   3.4e-16   3.1e-12     142     182 ..     364     404 ..     361     410 .. 0.92
   3 ?   -5.0   3.1         2   1.8e+04      19      41 ..     589     611 ..     573     627 .. 0.50

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 5.5e-27
                 HHTT--S--EEEEETTEEEEE--E.ETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTE CS
        RIO1  66 eeagvpvPkpielkrhvlvmefig.edgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedk 143
                 +e g+++P+pie++++vlvm f+g +dg+a p+lkd++  e+   ely e+l   rk++ e++lvHaDLSeyN+l++ d+
  CDO71483.1 230 KEVGIRCPEPIEVRENVLVMTFVGdKDGWASPRLKDADiPEAAFPELYVELLLMTRKIFIECKLVHADLSEYNILYHIDD 309
                 6889********************99************669999********************************9885 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 3.4e-16
                 TEEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC--- CS
        RIO1 142 dkvviIDvsQaveldhpnalefLerDveniikfFrrkgvek 182
                 ++++iIDvsQ+ve+dhp+a++fL+ D++ni +fF+++gv++
  CDO71483.1 364 GHLWIIDVSQSVEHDHPHAFDFLRADLRNIEDFFSKRGVHT 404
                 789**********************************9985 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 2
                 -S---SS-H.HHHCTTTSTTSTCG CS
        RIO1  19 ktstteFkk.rkkyvsgekrfkdr 41 
                 +++ ++ kk rkk  ++e+r ++r
  CDO71483.1 589 RHEDKQAKKeRKKAAKEEAR-EKR 611
                 33333333312223333333.333 PP

>> MFMR_assoc  Disordered region downstream of MFMR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.44   3.9e+03      47      70 ..      47      70 ..      42     122 .. 0.53
   2 ?    8.6   8.1   0.00027       2.4      14      79 ..     520     583 ..     511     625 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.44
  MFMR_assoc 47 gssegSDansqndsqrkkkrsqes 70
                 sse  D++s+ d+ ++++++ e 
  CDO71483.1 47 WSSESEDEESEPDEFEQEEDELEA 70
                577777888777776666666555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00027
  MFMR_assoc  14 slnmitgknneegkssegsangalsqsgesesegssegSDansqndsqrkkkrsqestsqnggdak 79 
                 s  mi g n++  k++++   +a+s +ge    +  eg Dans + +++ +++ ++   + g++++
  CDO71483.1 520 SAGMIGGHNEQGPKKPSAQQKKAVSFAGEKDETSEEEGCDANSDDSEEEAQSEDEDE--HEGKKER 583
                 678999**9998888888888888886666555555699999876666555555544..2232211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1954  (0.108985); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 3885.15
//
Query:       CDO71484.1  [L=641]
Description: hypothetical protein BN946_scf184909.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-105  353.0   0.5    5.9e-63  213.7   0.2    2.1  2  Peptidase_M3  Peptidase family M3


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.7   0.2   3.3e-67   5.9e-63       4     263 ..     213     472 ..     210     474 .. 0.95
   2 !  138.5   0.0   2.2e-44     4e-40     287     455 ..     472     634 ..     471     636 .. 0.97

  Alignments for each domain:
  == domain 1  score: 213.7 bits;  conditional E-value: 3.3e-67
                   C-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC. CS
  Peptidase_M3   4 espdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkke. 99 
                   +++++e+R+ +yea+  + a       n+++++++l lr++ Akllgy++ a++a e km k+ + v+dfl++l+++lrp + +  +++ ++kkke 
    CDO71484.1 213 YAENPETRRILYEAFEYRLA------VNVPVIDKVLDLRRQIAKLLGYKTWADYATEVKMVKTAQGVEDFLNDLQQRLRPIGLRDREAMLAIKKKEy 303
                   799***************88......58***********999*****************************************************99 PP

                   ...CT-S.SS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET...TT-EEEEEEEE CS
  Peptidase_M3 100 ...lgle.gelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvde..ilsegligeiyl 190
                        l+ gel++ D++Y+s+k+ e + +ld e lkeyfp+  v++  le+++eL+ ++fve++++   +whed r+++V++   +  + +ig++y+
    CDO71484.1 304 eekGHLFdGELYAHDYNYFSRKYIERSLNLDSELLKEYFPVSHVVTVTLEIYQELLELNFVEVEGE---TWHEDARLFAVWERdaKDGSDFIGYFYV 397
                   886444589*************************************99*************87666...************997788889******* PP

                   EEC--TTS-SS-EEEEEE--B..TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSS CS
  Peptidase_M3 191 DlyerkgKrggAasfglvksr..edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrtey 263
                   Dly+r++K  +Aa   ++ ++  edgtr+ pv++++ N +kp   kP+L+++ +v+t+fHE+GH +H+lls+t++
    CDO71484.1 398 DLYSRESKFPHAAVWPIILGFekEDGTRNFPVAAIVANLAKPNPIKPALMKHFDVKTFFHEMGHIFHELLSKTRC 472
                   ********************9755***********************************************9975 PP

  == domain 2  score: 138.5 bits;  conditional E-value: 2.2e-44
                   GGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHHCTTSCTTBTTSSGGGC-CCCH CS
  Peptidase_M3 287 ltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqasFghlf 383
                   + ep++l+++s+hy+t++++ ++ ++k+ik++ vn ++++lrq+++a+fd+++H ++e+ +      ++ + +lr+ ++ l++++ +  +a F h+ 
    CDO71484.1 472 CFEPRILSRMSSHYQTKKPLDADFIDKVIKSRYVNVGMFNLRQITYATFDLKVHVAEEHVD-----CTKLWCDLRESISFLKSTKYAPGHAAFQHI- 562
                   7899*******************************************************55.....899***************************. PP

                   TSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHH CS
  Peptidase_M3 384 ahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallka 455
                   ++ Y+++YY+y y+ v+a+d++ ++f++dp++++ G+ryr++iL+ G+skd+++llk+flgreps++a+ k+
    CDO71484.1 563 IGDYNVGYYGYFYSDVFAADMYATVFKDDPVDPARGRRYRENILRPGSSKDEMDLLKDFLGREPSSEAFVKQ 634
                   6*******************************999**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 3898.14
//
Query:       CDO71485.1  [L=499]
Description: Glycosyltransferase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-16   59.8   0.1      5e-16   58.6   0.0    1.5  2  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    0.00013   22.0   0.0    0.00021   21.3   0.0    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
       0.17   11.8   0.0       0.37   10.7   0.0    1.5  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.34     2e+03     113     142 ..     119     148 ..      92     168 .. 0.80
   2 !   58.6   0.0   8.3e-20     5e-16     265     380 ..     265     389 ..     244     399 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.34
       UDPGT 113 klqeskfdvvladpvlpcgellAellkipt 142
                 +l ++  ++vl+d  +p +e++Ae   i +
  CDO71485.1 119 NLRDAPLNAVLVDDTWPLAESIAEREGISF 148
                 67788889999999******9999877765 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 8.3e-20
       UDPGT 265 leefvqssGehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWrfdg......kkPstLaknt.....llvkWlPqndlLgHPktkAFvtHaGang 352
                 + e ++  Ge+ v+++S+Gsm  ++   k+ a  +    + q++   ++        + ++L +       ++ +W+Pq +lL H   +  +tH+G n+
  CDO71485.1 265 MDEQLKKRGERSVIYVSFGSMLWPLDPAKLVAALEV--MMEQNIPLALTRpspfarLPEDFLKRLEeygdaIIADWVPQQALLHHRAMGWCLTHGGHNT 361
                 55667788***************9977654333222..233444333333222332444555553355566**************************** PP

       UDPGT 353 vyEaisnGvPmvglPlFgdqrdNikrme 380
                 v+E ++  vPm++ P+  dq+ N+ +++
  CDO71485.1 362 VLECLTAAVPMIVWPIVMDQPTNAVHLT 389
                 ************************9986 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.5e-08   0.00021      50     119 ..     327     392 ..     301     407 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.5e-08
                      -TTTTCEEEEEESSSSHHHHHHHH-.EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHH CS
  Glyco_tran_28_C  50 veeltlkvevfefidkmaeaikaad.LvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekag 119
                      +ee++ + ++ + +++ a + ++a   +++++G++t++E+l + +p+I+ p       +q  Na+ l++ +
       CDO71485.1 327 LEEYG-DAIIADWVPQQALLHHRAMgWCLTHGGHNTVLECLTAAVPMIVWPIVM----DQPTNAVHLTDDL 392
                      44554.6677788887777777887789*******************9999888....********99854 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.2e-05      0.37       3      31 ..     136     164 ..     136     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.2e-05
  HU-CCDC81_bac_2   3 LansiaeaegisyeeAlqkiekeveelkq 31 
                      La+siae egis+++A + ++  v+  ++
       CDO71485.1 136 LAESIAEREGISFNDAAYSVSVIVDRYRH 164
                      89******************999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 3120.13
//
Query:       CDO71486.1  [L=510]
Description: hypothetical protein BN946_scf184909.g80, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-05   24.2   0.1    0.00013   22.5   0.1    1.9  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   7.3e-09   0.00013       4      66 ..     368     430 ..     366     458 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.3e-09
                 EEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHH CS
         Usp   4 rIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeael 66 
                 r ++a D sees++Alew++    ++g+eli+++v++ +++++ s  +     +  + +++++
  CDO71486.1 368 RYVLASDLSEESRYALEWGIGTVLRDGDELIIITVVENESKSTLSVDPVIPNPADRATKLRAQ 430
                 668899*********************************999988776655555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3395.38
//
Query:       CDO71487.1  [L=539]
Description: hypothetical protein BN946_scf184909.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-97  325.4   0.4    3.9e-97  324.9   0.4    1.1  1  Pet127    Mitochondrial protein Pet127


Domain annotation for each model (and alignments):
>> Pet127  Mitochondrial protein Pet127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.9   0.4  2.2e-101   3.9e-97       1     270 [.     159     425 ..     159     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 324.9 bits;  conditional E-value: 2.2e-101
      Pet127   1 fvtsskdkeLlelakeekkkyvsStSsltsvLsqlylllsnfrklnlsslskafeekskkftklarlpasvilrkkekvyaidsdksldk...eiiLsa 96 
                 fv+ss+dk +l++ak++++++++StSslt++L+q+yllls+ r +n+s+ls+ fe+  + ft ++r+p+svil+++++vy  d d + d+   eiiL  
  CDO71487.1 159 FVPSSQDKGMLKFAKRSQSRFAGSTSSLTGILTQIYLLLSEERYVNISNLSTDFESAPRFFTPGQRIPTSVILHYNNGVYLTDYDDERDEsteEIILLP 257
                 89***********************************************************************************955543338***** PP

      Pet127  97 lGkslEklLtleeeefekylkkeksekakeeekkeaYnysklgkfllrsqLDcydprlpgtgvFdlKtRavvaiRydleeveketgyeikklkgefeSf 195
                 +G +lEk++tl++e+f k++k+ + ++    + +++++y++++kfl+r+qLDc d+rlpgtgvFd+KtRa+ +iR+d+ +++++t+ +i++l+g+  Sf
  CDO71487.1 258 MGILLEKFFTLPKETFDKFRKEYTGNDYP--SLHDTHRYAQHEKFLMRAQLDCRDDRLPGTGVFDIKTRAISEIRHDVYNYTNYTDCKIDSLTGRSGSF 354
                 **********************9766654..4447**************************************************************** PP

      Pet127 196 erEyydlirsalLKYslQariGqmdGifvaYHnikrifGfqYlpleeldkvlfgeeelaskladkeFklslelle 270
                 erEyyd+irsa+L Ys+QariG+mdGifvaYHn+++ifGfqY++l+e+d +lfg    ++ ++++ F  +++l+e
  CDO71487.1 355 EREYYDMIRSAFLEYSFQARIGNMDGIFVAYHNVAQIFGFQYISLREMDLRLFG----REGAGQRVFLRCVALME 425
                 ******************************************************....45689*******99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3974.62
//
Query:       CDO71488.1  [L=292]
Description: hypothetical protein BN946_scf184909.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-29  102.5   0.0    1.9e-29  102.0   0.0    1.2  1  Proteasom_Rpn13  Proteasome complex subunit Rpn13 ubiquitin r
    3.3e-28   98.1   0.0    4.6e-28   97.6   0.0    1.3  1  RPN13_C          UCH-binding domain
  ------ inclusion threshold ------
      0.035   14.1   0.0       0.42   10.6   0.0    2.5  3  Frankia_peptide  Ribosomally synthesized peptide prototyped b


Domain annotation for each model (and alignments):
>> Proteasom_Rpn13  Proteasome complex subunit Rpn13 ubiquitin receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   3.2e-33   1.9e-29       1      86 []      11      95 ..      11      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 3.2e-33
  Proteasom_Rpn13  1 GkceldektkkvkpdprkGliylykeeeellhfkWkdrektgeaeddlilipgdasfkkveqcktgRvyvLkfksssqrlfFWlQd 86
                     G++ ++++t+ v++dp+kG i l++ e++llhf Wk+r+ t+e+e+dlil+pgda+f+kveq++ gR yvLkf+ss+qr+fFW+Qd
       CDO71488.1 11 GRLFRRGNTNFVDADPTKGAILLQNGEDGLLHFIWKNRS-TNENEEDLILFPGDAEFVKVEQSSWGRTYVLKFSSSNQRHFFWMQD 95
                     7788899********************************.*********************************************8 PP

>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   7.8e-32   4.6e-28      13     112 .]     172     274 ..     160     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 7.8e-32
     RPN13_C  13 aaq.....epevsLsdiltpealspll.sdpevveeLashLPe..egeateeelretlrSPqfrqalsslsqALqsgqlgpvlsqlgLdeeavaaaakg 103
                 ++q      pe+sL+d+ltp++l pl+   pe+ ++L++hLP   ++++t e+l+++++SPqfr+a+++l+ AL++g lg++++ lgL+ee     a++
  CDO71488.1 172 SGQaaaqpAPEISLTDVLTPANLRPLFaTRPELAQALFPHLPAdlPSPPTVETLERVISSPQFRAAVRNLDMALRTGLLGGLVRTLGLPEE-----AGT 265
                 333333469******************99999***********99999999****************************************.....*** PP

     RPN13_C 104 gveaFlkAl 112
                 gve Fl+Al
  CDO71488.1 266 GVEPFLRAL 274
                 *******97 PP

>> Frankia_peptide  Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.24   1.4e+03      17      34 ..     109     128 ..     101     130 .. 0.72
   2 ?   10.6   0.0     7e-05      0.42      21      46 ..     139     163 ..     136     168 .. 0.80
   3 ?   -2.4   0.0      0.82   4.9e+03      37      53 ..     223     235 ..     220     240 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.24
  Frankia_peptide  17 qrLladpeeav..keagYdl 34 
                       rLladp +      +gY++
       CDO71488.1 109 NRLLADPSIVPiwYSEGYNP 128
                      58999998876666777775 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7e-05
  Frankia_peptide  21 adpeeavkeagYdltpeElqalekad 46 
                      a++ +a  + gY+ tpeEl +++ + 
       CDO71488.1 139 ASSSQAS-AGGYQATPEELARIRSIV 163
                      5566666.79************9765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.82
  Frankia_peptide  37 eElqalekadadsleav 53 
                      e+l+++     +s+++ 
       CDO71488.1 223 ETLERV----ISSPQFR 235
                      445554....4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2019.47
//
Query:       CDO71489.1  [L=384]
Description: hypothetical protein BN946_scf184909.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   11.1   0.2        0.3   11.1   0.2    2.0  2  L27_2     L27_2
        1.5    9.3   6.3        6.3    7.4   0.0    4.1  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> L27_2  L27_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   3.3e-05       0.3      28      53 ..     164     189 ..     161     193 .. 0.93
   2 ?   -2.0   0.5      0.41   3.7e+03      27      48 ..     218     240 ..     213     242 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHH-HHHHHHHHHHHHHHHH CS
       L27_2  28 LsLLksvLqsPLfsqiLaLqkslqqL 53 
                 L LL   +qsP+  q+L +  s+q+L
  CDO71489.1 164 LTLLSCGVQSPVLYQLLEIWPSIQHL 189
                 8899999******************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.41
                 HHHHHHHHHH-HHHH.HHHHHHH CS
       L27_2  27 kLsLLksvLqsPLfs.qiLaLqk 48 
                 +Ls+L+  L s   s qiL+   
  CDO71489.1 218 RLSVLQWLLSSSTDSiQILSFRD 240
                 57777777776654448888765 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.67     6e+03      23      30 ..     184     191 ..     178     198 .. 0.72
   2 ?   -2.3   0.2      0.76   6.8e+03       5      19 ..     210     226 ..     206     241 .. 0.54
   3 ?    2.4   0.2     0.025   2.2e+02       2      27 ..     256     280 ..     244     302 .. 0.59
   4 ?    7.4   0.0    0.0007       6.3      11      38 ..     316     338 ..     310     347 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.67
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                 p+ ++L+L
  CDO71489.1 184 PSIQHLYL 191
                 55566665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.76
                 EEE--SS.---E-S-.H CS
       LRR_4   5 vLdLsnN.qltdipl.l 19 
                 +L+L  + +l+ +++ l
  CDO71489.1 210 ELNLLRTpRLSVLQWlL 226
                 45555555566666643 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.025
                 S--EEE--SS---E-S-HHH-TT--E CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLke 27 
                 +L++L L + + +    l+ +pnL+e
  CDO71489.1 256 KLRSLRLLD-CTRRSAVLSHCPNLEE 280
                 444444444.2222222444555555 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0007
                 S---E-S-HHH-TT--EEE-.-S----- CS
       LRR_4  11 NqltdiplleklpnLkeLdLsgNnlitd 38 
                 + +  i+    lp L++L++  N+++++
  CDO71489.1 316 CVIDVIGT---LPRLRVLTC--NSQLST 338
                 44455444...*********..657765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2780.62
//
Query:       CDO71490.1  [L=84]
Description: hypothetical protein BN946_scf184909.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-09   36.9   0.8    3.1e-09   36.7   0.8    1.1  1  DUF2205       Short coiled-coil protein
     0.0036   17.9   1.1     0.0039   17.8   1.1    1.1  1  YabA          Initiation control protein YabA
  ------ inclusion threshold ------
      0.077   13.3   2.4       0.91    9.9   0.2    2.2  2  Endotoxin_C2  Delta endotoxin


Domain annotation for each model (and alignments):
>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.8   5.1e-13   3.1e-09      17      68 ..      28      80 ..      23      84 .] 0.93

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 5.1e-13
     DUF2205 17 arerLqqqakeLqssLqaLaervdeVkeehdKLesenrfLqqYIgdL.mstsk 68
                ++e+L++ + + q+ L+a++++  +V+ + dKL s n+ Lq YI++L m+ +k
  CDO71490.1 28 KKEKLIKEIVAAQEDLRAMLAKTKAVQADVDKLVSGNETLQMYIDNLtMQMAK 80
                699********************************************987665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.1   6.6e-07    0.0039       2      54 ..      28      80 ..      27      84 .] 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.6e-07
                -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXX CS
        YabA  2 dkkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerlee 54
                +k++l++++ + +e+l+++l++ +++++++ +l+  n++L++  ++l  ++++
  CDO71490.1 28 KKEKLIKEIVAAQEDLRAMLAKTKAVQADVDKLVSGNETLQMYIDNLTMQMAK 80
                68899*****************************************9998854 PP

>> Endotoxin_C2  Delta endotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00015      0.91      40      62 ..      22      44 ..      21      45 .. 0.90
   2 ?    3.6   0.1     0.014        85      33      46 ..      52      65 ..      48      79 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
  Endotoxin_C2 40 kvtdstkKaeLqadidkAqelLd 62
                   vt+  kK++L ++i  Aqe L 
    CDO71490.1 22 IVTNAIKKEKLIKEIVAAQEDLR 44
                  69999***************986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
  Endotoxin_C2 33 aAqalVdkvtdstk 46
                  a+qa Vdk+ ++++
    CDO71490.1 52 AVQADVDKLVSGNE 65
                  67777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 603.30
//
Query:       CDO71491.1  [L=1311]
Description: hypothetical protein BN946_scf184909.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-32  112.4   0.0    3.8e-32  112.4   0.0    8.9  3  AAA_23         AAA domain
    1.1e-16   61.0  14.6    7.6e-09   35.3   0.0    3.5  3  SMC_N          RecF/RecN/SMC N terminal domain
    9.2e-14   51.9   2.3    3.5e-06   27.0   0.0    3.9  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    1.1e-09   38.6   2.2    1.1e-09   38.6   2.2    5.4  3  AAA_15         AAA ATPase domain
    2.2e-06   27.8   0.0    8.8e-06   25.9   0.0    2.1  1  SbcCD_C        Putative exonuclease SbcCD, C subunit
     0.0014   18.3   0.0     0.0035   17.0   0.0    1.6  1  AAA_29         P-loop containing region of AAA domain
     0.0019   18.4   0.5     0.0067   16.6   0.0    2.2  1  Roc            Ras of Complex, Roc, domain of DAPkinase
     0.0037   16.0   0.0     0.0037   16.0   0.0    8.2  7  AAA_13         AAA domain
     0.0069   16.9   0.0     0.0069   16.9   0.0    7.3  5  ABC_tran       ABC transporter
  ------ inclusion threshold ------
       0.01   15.6   0.3       0.01   15.6   0.3    5.1  4  Rad50_zn_hook  Rad50 zinc hook motif
       0.21   12.0   0.0       0.21   12.0   0.0    5.6  1  AAA_16         AAA ATPase domain
       0.35   10.4   0.0       0.35   10.4   0.0    3.7  2  GTP_EFTU       Elongation factor Tu GTP binding domain
        1.1    9.5   4.6        1.2    9.5   0.0    3.5  3  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   2.7e-35   3.8e-32       1     195 [.       6     237 ..       6     245 .. 0.69
   2 ?   -1.4  13.5         2   2.8e+03     142     199 ..     688     773 ..     620     774 .. 0.66
   3 ?   -2.8  10.8       5.3   7.3e+03     112     176 ..    1030    1122 ..    1012    1151 .. 0.62

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 2.7e-35
      AAA_23   1 kLkienfrsf..rdqe..idFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry......... 86 
                 kL i+++rsf  +  +  i+F +++t+I+G+NG+GKTTi++++k+a++g+ p++ r   +g++ +d++ ++e++vka+v+l+f   +g++         
  CDO71491.1   6 KLAIRGIRSFddK-GTavIEFFSPVTVIVGHNGSGKTTIIECLKYATTGDQPPNTR---GGAFIHDPKMANEKEVKAQVKLRFWAANGTRmlairnlsv 100
                 799*******643.3335*******************************8776555...699**************************99777555555 PP

      AAA_23  87 .........trsiererelskkkgkttkkaklelleideleqfisellgskkiil.nlilflgqerfeefel....kdkke......rleelekeleel 165
                           +++e    +s+++++++ k    +++ +e + ++++llg++k+ l n+i+++++++++++++    k+k++       l  ++k+l+ +
  CDO71491.1 101 tlkkngaltMKTLESILAVSEGNNDNIGKRGVISTKCAEMDAEMPRLLGVSKAVLeNVIFCHQEDSNWPLSEpsalKKKFDdifeatNLSRYTKALDNI 199
                 5555555555555555555555555555555555555999999999*********55555566666666666544466666888888777788888887 PP

      AAA_23 166 edekkllekl........eqekekekeleeleeeleei 195
                 ++ +k+  +         e +  +++  ++l+ +++e+
  CDO71491.1 200 KALRKERMADlkaeserlESLSREKAHADKLKARITEM 237
                 77666433332332333222222222555555555554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
      AAA_23 142 r................feefel.......kdkkerleelekeleeledekkllekl.....eqekekekeleeleeeleeilkel 199
                 +                 e+fe+       k+++e++++l++el++ e+e + l++l      + k ++ el +l++e++e + e+
  CDO71491.1 688 KstkccplcvrkmepteLEKFEKtvteamqKSTPEAIRSLQQELQDWEAELRRLQDLavlaaSKHKLEKVELPALKQEINEKEAEI 773
                 25566666666666655444444566666688889**********************9*99888888999***********99886 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.3
      AAA_23  112 leideleqfisellgskkiilnlilflgqer.......feefelkdkke............rleelekeleeledekkllekl...........e 176 
                  l+++ + +++ ++l s++++ln i++  + +       +++ e+++  e            +l +++ +l++le++++ ++++           +
  CDO71491.1 1030 LRENIRVRRLMRELASTEAELNKIDMEEAAKakriwteKWNVEKQK--EtdlqtkyshiggELSSYKSQLKTLENDAQDFKDVnkkyrdqlikvK 1122
                  3334444444458889999999999988888777666644444433..24477888899998888888888888888888887433333233330 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.5e-12   7.6e-09       2     100 ..       4     101 ..       3     115 .. 0.80
   2 ?   -2.1   1.1       1.5   2.1e+03      72     140 ..     237     306 ..     195     316 .. 0.48
   3 !   31.2   4.2     1e-10   1.4e-07      84     205 ..     978    1283 ..     892    1296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.5e-12
                 EEEEEEESETTEECE.EEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEE CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   2 lkrleienFksyagk.tvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevs 98 
                 l++l i++ +s+ +k t++++f + +t+ivG+NGSGK+ +++ +++    ++     +++  + ih  + ++++  ka+v++ f   + +      ++s
  CDO71491.1   4 LNKLAIRGIRSFDDKgTAVIEFFSPVTVIVGHNGSGKTTIIECLKYATTGDQP---PNTRGGAFIHDpKMANEKEVKAQVKLRFWAANGTRMLAIRNLS 99 
                 899*********8764677899999*********************9875555...57777889**98889999999*****99777766444444444 PP

                 EE CS
                 xx RF
       SMC_N  99 is 100
                 ++
  CDO71491.1 100 VT 101
                 44 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
                 SSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE....EEEEETTEEE-HHHHHHHHHCTT-STTCS-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  72 asvkkaeveitfdnedkklkiekeevsisrrvkrkge....seykingkevtkkevsellesagiskelLSgG 140
                  ++  a+++  +dn  ++    +++v  ++r+  +g+      +k+++ + +k++++e l+ a+ + +++Sg 
  CDO71491.1 237 MNSLIASLTAEYDNVRAE---YEQQVRANQRLNDTGSkfreIYVKVDQLNQRKEQYKEELSLARENLQEISGT 306
                 222223333333333333...3333444444444333332244555666666677777766666666666665 PP

  == domain 3  score: 31.2 bits;  conditional E-value: 1e-10
                  EETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT............................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
       SMC_N   84 dnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske............................................. 135 
                  +++ ++ + ++   +i+++  + +e  +k++  ++t +e+ + +++ag+++                                              
  CDO71491.1  978 KEKRSR-QLQEVTAQIEQQEAKVQELAVKLEHIRATVSEIDKEINEAGMTMAnlrenirvrrlmrelasteaelnkidmeeaakakriwtekwnvek 1073
                  222222.344444444444444444455555555555555555555555554555555555555557777777777777777777777777777779 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO71491.1 1074 qketdlqtkyshiggelssyksqlktlendaqdfkdvnkkyrdqlikvkmsdmanndlekyakaldnaimkyhslkmeevndtmrhlwnktyqgtdi 1170
                  99999999999999999999999999999999999************************************************************** PP

                  ...................................CS-HHHHHHHHHHHHHHHHC.CS--S.EEEECTTTTTS-HHHHHHHHH....HHHHHCTT.. CS
                  ...................................xxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxx.. RF
       SMC_N  136 ...................................lLSgGektLvalaLlfAiqk.vkpap.lyllDeidaaLDeknvkkvae....llkekskn.. 189 
                                                       S G+k L+++ +++A+   + +++ +  lDe   aLD +n+ ++a     +++e++++  
  CDO71491.1 1171 dgikicsdseggatkrtynyrvvmtkdqvemdmrgRCSAGQKMLASIIIRLALADsFGQNCgILALDEPTNALDTENIDALAAslvdIINERRNHan 1267
                  ****************************************************7651555554999*************9988521115666665444 PP

                  SEEEEE-SSHHHCCC- CS
                  xxxxxxxxxxxxxxxx RF
       SMC_N  190 aQfivislreemleka 205 
                  +Q+i+i+++e++l+k 
  CDO71491.1 1268 FQLIIITHDENFLRKL 1283
                  9**********99886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-07   0.00027       1      29 [.      29      54 ..      29      84 .. 0.74
   2 ?    0.7   0.3      0.28   3.8e+02      38     195 ..     126     292 ..     110     342 .. 0.76
   3 ?   -3.4   0.1       4.9   6.7e+03     170     201 ..     482     513 ..     406     541 .. 0.59
   4 !   27.0   0.0   2.5e-09   3.5e-06     149     301 ..    1062    1279 ..    1039    1281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdv 29
                ++v++G NgsGK++++++l+++    +  
  CDO71491.1 29 VTVIVGHNGSGKTTIIECLKYA---TTGD 54
                79*****************998...3333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.28
      AAA_21  38 ggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvse 134
                 ++g+ ++i+ +  + d e+p  +++++ ++++v + +  + ++     ++ ++ +++  e + l+++  + +  +   ++r ++  + +++l +ls+++
  CDO71491.1 126 NIGKRGVISTKCAEMDAEMPRLLGVSKAVLENVIFCHQEDSNWPLSepSALKKKFDDIFEATNLSRYTKALDNIKALRKERMADLKAESERLESLSREK 224
                 557788888888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

      AAA_21 135 pndlqfgkaltditsrawsllllldglrke.......rigllnifadyfgfakekrllqrlvrslklv 195
                 +++++ ++++t+  s ++sl  + d+ r e       + +l++   ++   + + ++l ++  ++k+ 
  CDO71491.1 225 AHADKLKARITEMNSLIASLTAEYDNVRAEyeqqvraNQRLNDTGSKFREIYVKVDQLNQRKEQYKEE 292
                 99999999999999999998888888888888865554444444444444444444444444444443 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.9
      AAA_21 170 nifadyfgfakekrllqrlvrslklveielsd 201
                 +i ad   + ++++ +++ +rs + +e  +++
  CDO71491.1 482 EINADIEEKRRRLEKAREDLRSANFDEKIAEK 513
                 33333333333333333333333333322222 PP

  == domain 4  score: 27.0 bits;  conditional E-value: 2.5e-09
      AAA_21  149 srawsllllldglrke..rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer........................ 219 
                  +r+w+ +++ +++ +   +  + +i +++  +++ ++ l+     +k+v+ +++d ++++++++ ++++l  +                        
  CDO71491.1 1062 KRIWTEKWNVEKQKETdlQTKYSHIGGELSSYKSQLKTLENDAQDFKDVNKKYRDQLIKVKMSDMANNDLEKYakaldnaimkyhslkmeevndtmr 1158
                  5666666666666666888888888888888888888888888999999999999988888888888888888899999999999999999999999 PP

      AAA_21  220 ..............................gvvflengdgqelparel.SdGtkrllalltallralkkg...sllliDEpEngLHP....kllrrl 278 
                                                +++ +  +d  e ++r   S G+k l+ ++  l+ a++ g   ++l++DEp n L+     +l ++l
  CDO71491.1 1159 hlwnktyqgtdidgikicsdseggatkrtyNYRVVMTKDQVEMDMRGRcSAGQKMLASIIIRLALADSFGqncGILALDEPTNALDTenidALAASL 1255
                  9999999999999999999999999999988888888899999999989**************************************4444444777 PP

      AAA_21  279 lell..kelsrngaQviltTHSpll 301 
                  ++++  +++++ + Q+i+ TH+  +
  CDO71491.1 1256 VDIIneRRNHA-NFQLIIITHDENF 1279
                  78886644444.8********9665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   2.2   7.7e-13   1.1e-09       4     260 ..       5     314 ..       3     384 .. 0.72
   2 ?   -1.6   1.8       1.3   1.7e+03     234     287 ..     456     528 ..     400     555 .. 0.59
   3 ?    2.3  36.7     0.083   1.1e+02      96     368 ..     933    1279 ..     763    1280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 7.7e-13
      AAA_15   4 kkikikNFRslkd...veidlseeltvliGkNnsGKSsilealdlFlnnkekkn.kkvikiekedleifeniseskdikIdvef............... 83 
                 +k+ i+  Rs++d   + i++ + +tv++G+N+sGK++i+e l++  + +++ n     +i + ++ ++  ++ + ++k++++                
  CDO71491.1   5 NKLAIRGIRSFDDkgtAVIEFFSPVTVIVGHNGSGKTTIIECLKYATTGDQPPNtRGGAFIHDPKMANE--KEVKAQVKLRFWAangtrmlairnlsvt 101
                 666666667777654456777777*******************99999997777944456666666655..6667777777777888888888888899 PP

      AAA_15  84 ...............................................aekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdek 135
                                                                  ++   e++ + ++++++++  +   ++++++++++  +l  +++ l++ k
  CDO71491.1 102 lkkngaltmktlesilavsegnndnigkrgvistkcaemdaemprllGVSKAVLENVIFCHQEDSNWPLSEPSALKKKFDDIFEATNLSRYTKALDNIK 200
                 999999999999999999999999999999999999999988777663336789999****************************************** PP

      AAA_15 136 isvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee.............elknvlksaiiklllisakRnvsdedsekkssllgkl 221
                    +++++  + ++e+ e+l  ek++ ++ k  +++  + + + + +++             +                  ++  +    k ++++ k+
  CDO71491.1 201 ALRKERMADLKAESERLESLSREKAHADKLKARITEMNSLIASLTAEYDnvraeyeqqvranQ----------------RLNDTGS----KFREIYVKV 279
                 ***************************************888888888833333333332220................2222222....112222222 PP

      AAA_15 222 kekileealqekleeelteklkeiqeklkeidkklaeel 260
                 ++   ++    ++ +e  + + e + +++ +d++lae+l
  CDO71491.1 280 DQLNQRK----EQYKEELSLARENLQEISGTDEELAERL 314
                 2222111....1122233333333333333333333333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
      AAA_15 234 l................eeelteklkeiqeklkeidkklaeelk....kilkkkidkikkfnykgkkneeieik 287
                                    +lt  l ei+ +++e+   l++  +     ++++ki + k+++  +++ + +e++
  CDO71491.1 456 VsmlqtkisdaerdvdaARMLTTRLAEINADIEEKRRRLEKAREdlrsANFDEKIAE-KNTKGRNFDLQRDELN 528
                 044444445544445555566777777777777777777655556666556666655.4555555555554444 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.083
      AAA_15   96 lkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkks...kkelpkekeeklekekeelkidkedlkklikkleeslkkee..... 184 
                  + ++e k+ + +l+ k+ + +k+++d ++  +k e +++ i+ + k++     +  + + e +e + +el ++ e ++ + +++ + +++       
  CDO71491.1  933 KLEQEHKELERELNTKIAQAQKMSQDLNMSADKLESMNKAIERYVKEKrsrQLQEVTAQIEQQEAKVQELAVKLEHIRATVSEIDKEINEAGmtman 1029
                  2222223333345555555555555555555555555555544444432222222233333344444444455555555566555555555599999 PP

      AAA_15  185 ....................elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk 261 
                                      + k  +++a++  ++  +k nv++++++  ++ ++ +  +++++++q k  e++ +++k++++k++++  k++++  
  CDO71491.1 1030 lrenirvrrlmrelasteaeLNKIDMEEAAKAKRIWTEKWNVEKQKETDLQTKYSHIGGELSSYKSQLKTLENDAQDFKDVNKKYRDQLIKVKMSDM 1126
                  9999999999999988888555556777777777777777777777777888888888888888888888999999999999999999999977665 PP

      AAA_15  262 .........kilkkkidkikkfnykgkkneeieik........................................ddeelplnknG...sGvqrlll 306 
                           k l++ i k  +++  ++       +                                        ++++++++++G    G++ l +
  CDO71491.1 1127 anndlekyaKALDNAIMKYHSLKMEEV-------NdtmrhlwnktyqgtdidgikicsdseggatkrtynyrvvmTKDQVEMDMRGrcsAGQKMLAS 1216
                  786665444444444444333333333.......23355666899999999999999******************888888887763336******* PP

      AAA_15  307 lillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt....QviitTHSphi 368 
                  +i+ ++ a       ++  il+++EP + L +++   l+ +l +++n+ ++    Q+ii TH + +
  CDO71491.1 1217 IIIRLALADSF---GQNCGILALDEPTNALDTENIDALAASLVDIINERRNhanfQLIIITHDENF 1279
                  ***********...99**********************************************9876 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.4e-09   8.8e-06      12      88 ..    1188    1255 ..    1183    1257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.4e-09
     SbcCD_C   12 fevevr.dedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88  
                  ++++v+ ++d+ e    +++g+ S G+k +la++++ +ala+ +++      ++++++LDE  + lD e+i++l + l
  CDO71491.1 1188 YNYRVVmTKDQVE---MDMRGRCSAGQK-MLASIIIRLALADSFGQ------NCGILALDEPTNALDTENIDALAASL 1255
                  4444442233333...689*********.*****************......49*****************9987655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.5e-06    0.0035      19      49 ..      23      54 ..      12      59 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
      AAA_29 19 idlkg.atlltGpsGsGKSTllDAiqalLvpa 49
                i+  + +t+++G++GsGK+T++  +++  +++
  CDO71491.1 23 IEFFSpVTVIVGHNGSGKTTIIECLKYATTGD 54
                44445589**************9998877766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.9e-06    0.0067       3      66 ..      31      90 ..      30     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.9e-06
                EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SG CS
         Roc  3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGq 66
                v+vG +g+GKt++++ +   +  ++  +t g  f++    k+   ++++ + +vkl++W   G 
  CDO71491.1 31 VIVGHNGSGKTTIIECLKYATTGDQPPNTRGGAFIHDP--KMA--NEKEVKAQVKLRFWAANGT 90
                89********************************9864..232..233445679*****88776 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.7e-06    0.0037       2      60 ..      12      75 ..      11      86 .. 0.81
   2 ?    4.0  14.9     0.011        15     259     452 ..     159     348 ..     149     382 .. 0.73
   3 ?    2.1  20.1     0.044        61     288     469 ..     582     789 ..     576     803 .. 0.75
   4 ?    3.4  32.4     0.018        24     255     467 ..     690     959 ..     683     966 .. 0.60
   5 !    7.5  29.7     0.001       1.4     282     479 ..     838    1032 ..     834    1042 .. 0.71
   6 ?   -3.3   7.5       1.8   2.5e+03     111     203 ..    1042    1136 ..    1031    1161 .. 0.48
   7 !    5.8   7.0    0.0032       4.5     405     597 ..    1091    1297 ..    1070    1309 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
      AAA_13  2 vrifdfrgaeled.fkriNliYGwNGaGKTtLSrllrslelgetepkfangsi....eitngee 60
                +r+fd +g+ + + f+ + +i G NG+GKTt+ + l+  ++g + p+   g++    +++n++e
  CDO71491.1 12 IRSFDDKGTAVIEfFSPVTVIVGHNGSGKTTIIECLKYATTGDQPPNTRGGAFihdpKMANEKE 75
                6789777777555499***************************999999999966665555544 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
      AAA_13 259 pFCgq...plpaerkaaLeahFddefee.kqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfk 353
                  FC q   + p +   aL++ Fdd fe+ + +r  k++++++  ++e ++ lka s++ +  s+ +   ++lka++ ++++ + +l  + ++ r e  +
  CDO71491.1 159 IFCHQedsNWPLSEPSALKKKFDDIFEAtNLSRYTKALDNIKALRKERMADLKAESERLESLSREKAHADKLKARITEMNSLIASLTAEYDNVRAEYEQ 257
                 677772223555667789999999998713467777788888887777788877777766667777777778888877777777776666666666665 PP

      AAA_13 354 svelesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekq 452
                 +v    ++++++   ++  ei   + + N++ ++++ee + a+++l+   ++  ++el    + +   ++++ k  ++ + ee +l  +ee+i+e ++q
  CDO71491.1 258 QVR---ANQRLNDTGSKFREIYVKVDQLNQRKEQYKEELSLARENLQE--ISGTDEELA---ERLLTHDDNVVKQRQRRTVEEGRLMDVEEDIAEARAQ 348
                 444...444555566899999999999999999999999999999988..655566654...5566667777777777788888888888888887776 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.044
      AAA_13 288 Lekliekveskkselleklkavsdeasensa.feedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakie.................... 365
                 +e+ +++ + +k+++ ++l++ + +as+n + ++   ++lka+a++ ++++k+l r+l +  ke   + +++++ + ++                    
  CDO71491.1 582 MEQELDRAALEKERERAELESRTSTASKNLQaAQTSLANLKAQAKVKQDEIKALDRRLHEGLKEAECDGTVDDAIDTASkeigvrneelgksagshdvy 680
                 455555555555555556666555544443314444666666666666666666666666666666666666666655445666666666666666666 PP

      AAA_13 366 ....sikklvaeineliakhN.ekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpa 459
                     ++ k+ +     ++k      +++e+ ++ea +k     + +l++el+  + ++++l++ +  +  + k e+ el +l++ei+e+e+++ + +  
  CDO71491.1 681 krllQAGKSTKCCPLCVRKMEpTELEKFEKTVTEAMQKSTPEAIRSLQQELQDWEAELRRLQDLAVLAASKHKLEKVELPALKQEINEKEAEIPNLTTE 779
                 666699999999999999987256899**********************************************************************99 PP

      AAA_13 460 aeeinkeLka 469
                 a+e   +L++
  CDO71491.1 780 ADEGSAQLSE 789
                 9998777766 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.018
      AAA_13 255 sdtCpFCgqplpaerkaaLeahFddefe....ekqerLekliekveskkselleklkavsde.....asensafeedkeelkaeaealeeqLkglqral 344
                 ++ Cp C ++++    ++ e+  +++++    e +++L++ +++ e + ++l++  + ++++     + e +a +++++e +ae+ +l+++ ++ + +l
  CDO71491.1 690 TKCCPLCVRKMEPTELEKFEKTVTEAMQkstpEAIRSLQQELQDWEAELRRLQDL-AVLAASkhkleKVELPALKQEINEKEAEIPNLTTEADEGSAQL 787
                 5678888888876555555555555554111145566666666666666555333.2222222234433334444445555555555555555555566 PP

      AAA_13 345 eaKrkepfksvelesvkakie..............................sikklvaeineliakhNekvanleeekeeakkklelhlv......... 404
                 ++  k++ + v l++ +a ++                              s+++++++i + i+ + +  +nl +++ + + +l+  +          
  CDO71491.1 788 SEVTKDLKEIVALQQHAASVSktqkeiarlkqeiaalesdllatgsaktadSVQEELDRISAEIRTNEREKQNLLADRDRQNAALRSLETdlhrlelee 886
                 666655555555555555554556666688888888888888899888888888888888888888888888876665555555555444333555555 PP

      AAA_13 405 ..........eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeL 467
                            ele  + e+k +++++++ +++l+ ++++++a ++kle+e keLe++l+++   a+++ + L
  CDO71491.1 887 sqcqnqlrdkDELERRIAEMKAEIAAANTRLKELDGKIADAQAPIEKLEQEHKELERELNTKIAQAQKMSQDL 959
                 5555555555677777777777777777777777777777777777777777777777777777777777766 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.001
      AAA_13  282 eekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineli 378 
                  +  qe+L+++ +++ ++++e ++ l++   ++ + +  e d + l+ e ++ ++qL+  +++le+++ e+ +  e+  ++ +++++  ++a++++ i
  CDO71491.1  838 DSVQEELDRISAEIRTNEREKQNLLADRDRQNAALRSLETDLHRLELEESQCQNQLRD-KDELERRIAEMKA--EIAAANTRLKELDGKIADAQAPI 931 
                  4456777777777777777777777777777777888888888888888888888876.5677877777766..66666666777777777777777 PP

      AAA_13  379 akhNekvanleeekeeakkklelhlveeleseldeykkkykklekaie.klekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlge 474 
                  +k  +  ++le+e ++   + ++ + ++l+   d++++  k++e+ ++ k  ++l+e +a++++ e++++eL  +l+ ++ +++ei ke+++ G++ 
  CDO71491.1  932 EKLEQEHKELERELNTKIAQAQK-MSQDLNMSADKLESMNKAIERYVKeKRSRQLQEVTAQIEQQEAKVQELAVKLEHIRATVSEIDKEINEAGMTM 1027
                  77777777776666665555444.33444444444554444444444314456789999***********************************999 PP

      AAA_13  475 leLkf 479 
                  ++L+ 
  CDO71491.1 1028 ANLRE 1032
                  88876 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 1.8
      AAA_13  111 kleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkk..nrka.aellsdeelkakletvesenlpelap 203 
                  +l ++ea+l+k + e+ +++k + +e w+   k+k+++l+++++ + +e    +  lk+l+++  ++k+ ++ ++d+  k k++ + ++ l+++a+
  CDO71491.1 1042 ELASTEAELNKIDMEEAAKAKRIWTEKWNVE-KQKETDLQTKYSHIGGELSSYKSQLKTLENDaqDFKDvNKKYRDQLIKVKMSDMANNDLEKYAK 1136
                  3455555666666665555555556666644.5555666655555555443333333433333101111022233333344444444444444444 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0032
      AAA_13  405 eeleseldeyk...kkykklekaieklekelkeeeaelkkleeeikeLekql.rdekpaaeeinkeLka.....f.GlgeleLkfeee........k 483 
                  ++++s+l++++   +++k+++k+  +   ++k +  + + le+ +k+L + + + +    ee+n+ +++     + G   + +k+  +        +
  CDO71491.1 1091 SSYKSQLKTLEndaQDFKDVNKKYRDQLIKVKMSDMANNDLEKYAKALDNAImKYHSLKMEEVNDTMRHlwnktYqGTDIDGIKICSDseggatkrT 1187
                  4444444444433344444444444444444444555555555599998887245677899999999644444488999999999888889998888 PP

      AAA_13  484 kgYrivrkg...gsqaaetLSeGEktaIaflYFlkslkeddseigkdkivviDDPvSSLDs.nslfivfsliksrll.kkkkakQlfiLTHnleffk 575 
                   +Yr+v  +   + +  +  S G k +  ++  l++ ++ +++    +i  +D P   LD+ n+  +++sl++     +++   Ql+i TH  +f++
  CDO71491.1 1188 YNYRVVMTKdqvEMDMRGRCSAGQKMLASIIIRLALADSFGQNC---GILALDEPTNALDTeNIDALAASLVDIINErRNHANFQLIIITHDENFLR 1281
                  8999887663333455688999*999999999999988666665...*************835668899998877643666667************* PP

      AAA_13  576 evkkntkrkrkkkeesfyllkk 597 
                  ++ +          e ++++ +
  CDO71491.1 1282 KLGQSNV------MEYYWRVSR 1297
                  9976522......344555544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     5e-06    0.0069      13      35 ..      29      51 ..      26     111 .. 0.83
   2 ?    2.3   1.1      0.16   2.2e+02      35     106 ..     424     515 ..     416     521 .. 0.74
   3 ?   -2.8   0.2       5.9   8.1e+03      55      89 ..     596     643 ..     549     663 .. 0.54
   4 ?   -0.6   0.3       1.3   1.7e+03      49      94 ..     712     796 ..     686     822 .. 0.42
   5 !    8.7   1.6    0.0017       2.3      61     137 .]    1097    1241 ..    1039    1241 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5e-06
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                +++ivG+nG+GK+t++++l   +
  CDO71491.1 29 VTVIVGHNGSGKTTIIECLKYAT 51
                689**************996554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
                 S--SEEEEEETTCEGGG......B-HHHCCHCEEEE-SS.--S-TTSBHHHH...............HHHTCHHHHHHHSTTGGTTCBGESTTS CS
                 xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx.xxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  35 lkpteGeilldgkdlke......qeleslrkeigvlpqe.pqlfpeltvren...............esdeeiekalsklglkelkdtvvkssp 106
                 ++ +++e +l+ ++l++      qe++ lr ++++l+ + +   +++ +                  e+++++eka++ l+  +++++++++++
  CDO71491.1 424 SRAQNEEYNLKARQLHTeleghrQERRALRDRVSMLQTKiSDAERDVDA--ArmlttrlaeinadieEKRRRLEKAREDLRSANFDEKIAEKNT 515
                 5566666666766666666677788888888888888885444444433..245788999999999999999**********999999987765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.9
                 HHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx RF
    ABC_tran  55 eslrkeigvlpqepqlfpeltvren.............esdeeiekal 89 
                 e+++ e+++ +  ++l+   t   n             + d+++++ l
  CDO71491.1 596 ERAELESRTSTASKNLQAAQTSLANlkaqakvkqdeikALDRRLHEGL 643
                 222333333333333333333222244444433334444444444444 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.3
                 GGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........................................HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................xxxxxxxxxxxxxxx RF
    ABC_tran  49 lkeqeleslrkeigvlpqepqlfpeltvren........................................esdeeiekalsklgl 94 
                 ++e   +s+ + i+ l+qe q ++   +r+                                         e +++++++ + l+ 
  CDO71491.1 712 VTEAMQKSTPEAIRSLQQELQDWEAE-LRRLqdlavlaaskhklekvelpalkqeinekeaeipnltteadEGSAQLSEVTKDLKE 796
                 44445555555555555553333333.22222344444444443334444444444333333333333222333333333333333 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0017
                  EEEE-SS--S-TTSBHHHH....................................HHHTCHHHHHHHSTTGG......................... CS
                  xxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxx......................... RF
    ABC_tran   61 igvlpqepqlfpeltvren....................................esdeeiekalsklglke......................... 96  
                  +++l+ ++q f+++    n                                                    +                         
  CDO71491.1 1097 LKTLENDAQDFKDV----NkkyrdqlikvkmsdmanndlekyakaldnaimkyhsL---------------Kmeevndtmrhlwnktyqgtdidgik 1174
                  33333333333333....03334556666555555544444444444444444441...............02222233333333335555566666 PP

                  ...................TTCBGESTTS.GGS-HHHHH......HHHHHHHHHHTSSEEEEESTTT CS
                  ...................xxxxxxxxxx.xxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   97 ...................lkdtvvkssp.ssLSgGqkq......rvalarallkkpkllllDEpta 137 
                                     ++++ v+ ++    S Gqk       r+ala ++ ++  +l lDEpt+
  CDO71491.1 1175 icsdseggatkrtynyrvvMTKDQVEMDMrGRCSAGQKMlasiiiRLALADSFGQNCGILALDEPTN 1241
                  666666666666666666655566655556999*****988888899*******************7 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       6.7   9.2e+03       1      13 [.     282     294 ..     282     299 .. 0.75
   2 ?   -3.1   0.1       5.4   7.5e+03       5      16 ..     428     439 ..     425     441 .. 0.79
   3 ?   15.6   0.3   7.5e-06      0.01       8      37 ..     680     708 ..     675     717 .. 0.80
   4 ?   -2.4   0.5       3.2   4.5e+03      38      51 ..     931     944 ..     930     950 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.7
                    HHHHHHHHHHHHH CS
  Rad50_zn_hook   1 lhqeteelnkkie 13 
                    l+q++e++++ ++
     CDO71491.1 282 LNQRKEQYKEELS 294
                    6889999998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.4
                    HHHHHHHHHHHT CS
  Rad50_zn_hook   5 teelnkkieelk 16 
                     ee+n k+ +l+
     CDO71491.1 428 NEEYNLKARQLH 439
                    589*****9997 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 7.5e-06
                    HHHHHHHHTT-SEE-TTT--EE-HHHHHHH CS
  Rad50_zn_hook   8 lnkkieelkeakgcCPlCgReldeehrseL 37 
                    +++ +   k++k cCPlC R++++ + +++
     CDO71491.1 680 YKRLLQAGKSTK-CCPLCVRKMEPTELEKF 708
                    555566666777.**********9998776 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.2
                    HHHHHHHHHHHH.. CS
  Rad50_zn_hook  38 ikelqsklerlpee 51 
                    i++l++++++l+ e
     CDO71491.1 931 IEKLEQEHKELERE 944
                    57888888888776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.21      25      49 ..      28      52 ..      19      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      AAA_16 25 elvllsGesGvGKsslvrellrale 49
                ++++++G+ G+GK++++++l+ a +
  CDO71491.1 28 PVTVIVGHNGSGKTTIIECLKYATT 52
                6789**************9995544 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.35       7      36 ..      31      60 ..      28      90 .. 0.78
   2 ?   -3.0   0.1       3.1   4.3e+03     131     151 ..     278     301 ..     251     358 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                EEEESTTSSHHHHHHHHHHHTTSSCHHHHH CS
    GTP_EFTU  7 giighvDhGKtTLtdrLlyktgaiskkgek 36
                +i+gh  +GKtT++++L y+t  ++  +++
  CDO71491.1 31 VIVGHNGSGKTTIIECLKYATTGDQPPNTR 60
                79*****************99887775554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
                 SCGST...HHHHHHHHHHHHHHHH CS
    GTP_EFTU 131 KmDrl...kaelkeiveevkqkls 151
                 K+D+l   k+++ke  + ++++l+
  CDO71491.1 278 KVDQLnqrKEQYKEELSLARENLQ 301
                 666663332222222222233332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00084       1.2       7      29 ..      29      51 ..      27      82 .. 0.83
   2 ?   -2.9   0.4       5.5   7.5e+03      51      84 ..     963     994 ..     932    1004 .. 0.54
   3 ?   -1.9   0.1       2.7   3.7e+03      93     129 ..    1232    1274 ..    1208    1282 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00084
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                ++v++G+ G+GKTt ++ l++  
  CDO71491.1 29 VTVIVGHNGSGKTTIIECLKYAT 51
                689*************9998765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
      AAA_22  51 t.sskdllrellralglelkaerlsseellealeq 84 
                   +++++ +++ r +++++++   +++e+ +++eq
  CDO71491.1 963 AdKLESMNKAIERYVKEKRSR---QLQEVTAQIEQ 994
                 323444444444444444444...66666666655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.7
      AAA_22   93 elliiDEaqh.lrseealeeL.rsllnl.....srkgvqliLvG 129 
                  ++l +DE  + l   e++  L  sl+++     ++ ++qli++ 
  CDO71491.1 1232 GILALDEPTNaL-DTENIDALaASLVDIinerrNHANFQLIIIT 1274
                  678888888878.4444444435555555557779999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3348  (0.186737); expected 358.6 (0.02)
Passed bias filter:                      764  (0.0426125); expected 358.6 (0.02)
Passed Vit filter:                       231  (0.0128842); expected 17.9 (0.001)
Passed Fwd filter:                       130  (0.00725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 3.89u 0.52s 00:00:04.41 Elapsed: 00:00:00.89
# Mc/sec: 4457.49
//
Query:       CDO71492.1  [L=1027]
Description: hypothetical protein BN946_scf184909.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-78  263.7   0.3    3.2e-78  263.2   0.3    1.2  1  AMP-binding     AMP-binding enzyme
     0.0039   17.3   4.0       0.01   16.0   4.0    1.7  1  Cytochrom_B561  Eukaryotic cytochrome b561
     0.0047   17.3   1.1      0.015   15.6   1.1    1.8  1  DUF4396         Domain of unknown function (DUF4396)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.2   0.3   5.3e-82   3.2e-78       1     422 [.      37     416 ..      37     417 .. 0.86

  Alignments for each domain:
  == domain 1  score: 263.2 bits;  conditional E-value: 5.3e-82
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEET.TS-HHHHHHHHHHHTESE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnp.tltaeelayiledseakv 97 
                  +e+ aa +p ++a+     g+++TY+eld+++n lA++Lr lGv++g +V +l+++s+ +vv ++a lkaG++++pl+    t+ +l+++l+ds+akv
   CDO71492.1  37 FEHYAAAQPHAIAVEH--LGESMTYGELDRQANILANHLRVLGVRPGVKVCLLVQRSIVMVVGIVAMLKAGGAYAPLDGaIVTQSTLEHVLTDSGAKV 132
                  788999********55..9*********************99***********************************98357999************* PP

                  EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHH CS
  AMP-binding  98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslklet 195
                  ++  + +e ++++ +  +       + +l++ +      l++++++      p  ++   p d +yiiYTSGTTGkPKGV + hrn+++ v+ +  + 
   CDO71492.1 133 VL--TTHEYVHRVSD-FP-------TFCLEDIG-----SLNQNTSK------P--TDLSAPTDAVYIIYTSGTTGKPKGVEVMHRNVTNLVCLA--PG 205
                  **..65444443322.22.......34444222.....22322211......2..334789*****************************9995..55 PP

                  CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293
                    +++++ +v + l +a++++  +e+l++l++G+t+++  k+++     + ++++   v ++ ++P+++       +++      d + + +v ++ge
   CDO71492.1 206 NIEMRPGRRVSQLLNIAFDMAA-WEILGSLSNGCTLCVRGKSSK----EWRAVMK--TVDIVIATPSMMAPH----DPA------DYPNIMVVATAGE 286
                  577889***************8.***************887755....5767777..89999*****98754....244......7889999999*** PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEE. CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafd. 390
                  p++  l++++ +    + +++ G+TE t+v t ++l+++ +   ++G p+p++ v+++De+ ++p p ge G ++ +g++v kgYl+ p++tae++  
   CDO71492.1 287 PCPLPLAEKWAKSA--HYYNCCGPTEVTIVNT-VHLHTPGE-FLTIGGPVPNTNVYVLDEN-MKPAPIGEAGVMWAGGACVSKGYLNLPDKTAERYMl 379
                  ************96..48************98.66566644.559***************9.*********************************985 PP

                  E...T.CC.EEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 391 s...e.gr.wlrTGDlgrldedGyleivgRkkdlikl 422
                  +   + g  +++TGDlgr++e+G+le +gR +d++k+
   CDO71492.1 380 DpftNdGTyMFNTGDLGRWHENGELEHLGRVDDQVKV 416
                  368744667***************************8 PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.0   1.7e-06      0.01      29     128 ..     685     782 ..     659     786 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.7e-06
                     .-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  29 lskktkkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfllpklskklralllplHvllGlvifvlai 123
                      ++ + ++ H+    l   +a+ gl+  + ++ ++  + l+     +  v+v  f+l l++G+vlf +pk++ +   +++++H++lG  +  l+ 
      CDO71492.1 685 IRRIVARVYHIG--GLHSGCAISGLVWLILFTVQATRELLNKQQVSIATVAVTYFILALLIGIVLFAYPKVRSTHHDAFERTHRFLGWSATALVW 777
                     555566666654..35567999999999999999999999999999********************************************99999 PP

                     HHHHH CS
  Cytochrom_B561 124 vtall 128
                     v+++l
      CDO71492.1 778 VQVIL 782
                     99875 PP

>> DUF4396  Domain of unknown function (DUF4396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1   2.6e-06     0.015      14     118 ..     700     809 ..     692     816 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.6e-06
     DUF4396  14 aGcaiGdilgmviltslsl.....alglpmaatmilsvvlalllgllletalllrekglslaealktAlkadtlSmlamevgmnlvmllllgamdaele 107
                 +Gcai  ++  +++t + +       + ++a++++  ++lall+g++l+ ++ +r+ +    e   + l+ +   ++ ++v+    ++    +   ++ 
  CDO71492.1 700 SGCAISGLVWLILFTVQATrellnKQQVSIATVAVTYFILALLIGIVLFAYPKVRSTHHDAFERTHRFLGWSATALVWVQVILLTNDYRPADQSLGQAL 798
                 79999999999988866668854322556688888899****************9989999999999**********************9888888999 PP

     DUF4396 108 ltsplfWfslq 118
                 ++sp+fW++ +
  CDO71492.1 799 VHSPAFWLVTV 809
                 *******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6670.73
//
Query:       CDO71493.1  [L=82]
Description: hypothetical protein BN946_scf184909.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 568.25
//
Query:       CDO71494.1  [L=765]
Description: hypothetical protein BN946_scf184909.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-55  186.6   0.0    7.5e-55  186.1   0.0    1.2  1  Pkinase         Protein kinase domain
    4.3e-25   88.5   0.2    4.6e-23   81.8   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00015   21.2   0.7     0.0059   16.0   0.0    2.7  3  Kinase-like     Kinase-like
     0.0017   17.9   0.1     0.0054   16.3   0.1    1.8  1  RIO1            RIO1 family
     0.0026   17.2   0.4     0.0044   16.4   0.4    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0052   16.4   0.0          1    9.0   0.0    2.4  2  FTA2            Kinetochore Sim4 complex subunit FTA2
  ------ inclusion threshold ------
       0.19   10.5   0.1       0.33    9.7   0.1    1.3  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.0   2.9e-58   7.5e-55       1     264 []     395     689 ..     395     689 .. 0.90

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 2.9e-58
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE......SSEEEEEEE--TTEBHHHHHH.. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee......kdelylvleyveggeladlle.. 90 
                 y +l  +G+G++++V++++ ++ ++i+A+K+++ +k + ++   +++Ei +lk+l+   +i+rl+++  +      k +l+lv+e+ e + la+ll+  
  CDO71494.1 395 YARLDMIGKGGSSRVFRVM-NQANEIYAIKRVALDKVDAETMAGYMNEIGLLKRLDgNARIIRLFDSEVKqatagsKGHLLLVMECGEID-LAKLLQeq 491
                 567789*************.599*********************************99********9988899999************87.*****975 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH......TTSCBSHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl......keneyskkvDv 180
                 +k  +++  +  ++kq+l++++ +H+++i+H DlKp+N+ +  +g+lK++DFG+a+ + ++++    ++++gt +Y++PE +      ++ ++++++Dv
  CDO71494.1 492 QKEPMDPVWIAYYWKQMLQAVHVIHEEKIVHSDLKPANFVLV-RGQLKLIDFGIANAIANDTTniqRDHQIGTVNYMSPEAIelpdgmRRLKVGRPSDV 589
                 556699999*********************************.*****************9999999*****************998888999****** PP

                 HHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS.................-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 181 WslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei.................seeakdllkkllkkdpkkRltaeellqhp 262
                 WslG+ily++++g+ppf++ +  +k++++ d+ e++++  +      p++++                  ++++++ +k++l ++pk R t+ ellq++
  CDO71494.1 590 WSLGCILYQMVYGQPPFQALSVYQKMKAIPDE-EHVIEFPEYAVPLAPRRKDTpptgsppqrmehlrvrvPQSIINTMKSCLVRNPKARATIPELLQQN 687
                 ******************88888877777777.444444443333333333336778889999999********************************* PP

                 GG CS
     Pkinase 263 yl 264
                 +l
  CDO71494.1 688 WL 689
                 97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   1.8e-26   4.6e-23       6     229 ..     400     630 ..     396     634 .. 0.85
   2 !    4.4   0.1    0.0074        19     229     257 ..     657     685 ..     648     686 .. 0.86

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 1.8e-26
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE......SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkkl.khpnivkllgvct......keepllivteyvkgGdLlkfLrkk 95 
                   +G+G  ++V++   +     +++  a+K +  ++ ++e+++  ++e+ ++k+l  + +i++l    +      ++++ll+v+e + + dL k L+++
   CDO71494.1 400 MIGKGGSSRVFRVMNQ-----ANEIYAIKRVaLDKVDAETMAGYMNEIGLLKRLdGNARIIRLFDSEVkqatagSKGHLLLVME-CGEIDLAKLLQEQ 491
                  5777777777776666.....6777788888346777888999***********9999*****987764444444455888888.6778********* PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE......EEHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk......ftsksD 187
                  +ke+++  ++  +  q+ ++++ ++++k+vH dl   N +l  + + k+ DfG+a++i +d +  +++++   v++m+pE+++         +   sD
   CDO71494.1 492 QKEPMDPVWIAYYWKQMLQAVHVIHEEKIVHSDLKPANFVLV-RGQLKLIDFGIANAIANDTTNIQRDHQIGTVNYMSPEAIELPDgmrrlkVGRPSD 588
                  ***********************************9997777.5889**********************************986555566669999** PP

                  HHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTT CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypglkneevlekl.kegkrlekpek 229
                  vWs G +l+ ++  g+ p++ l+  + ++++ +e++ +e pe+
   CDO71494.1 589 VWSLGCILYQMVY-GQPPFQALSVYQKMKAIpDEEHVIEFPEY 630
                  **********998.***********999999666666777776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0074
                  TSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 229 kcpeelyelmkkcweedpeeRptfselve 257
                   +p+++ + mk+c+ ++p+ R+t+ el++
   CDO71494.1 657 RVPQSIINTMKSCLVRNPKARATIPELLQ 685
                  57899******************999876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.011        27      10     100 ..     391     490 ..     386     501 .. 0.67
   2 !   16.0   0.0   2.3e-06    0.0059     112     250 ..     472     606 ..     455     615 .. 0.77
   3 ?   -1.3   0.1      0.43   1.1e+03     122     162 ..     719     759 ..     709     761 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.011
  Kinase-like  10 rertlvrgellkkgdrsvvfevkdqetgeplavkvfllps.eask.....kd...lerlkeqelairllrg.knpeqAkdhlrlllpfdlvkiqkkkp 97 
                   +r++ r ++++kg++s vf+v +q+ +e  a+k   l + +a       ++   l+rl  ++  irl+     +  A+++  lll ++ ++i   k 
   CDO71494.1 391 NKRQYARLDMIGKGGSSRVFRVMNQA-NEIYAIKRVALDKvDAETmagymNEiglLKRLDGNARIIRLFDSeVKQATAGSKGHLLLVMECGEIDLAKL 487
                  579999*******************9.99999987777663443211111232224555556666666666556666777777777777777766666 PP

  Kinase-like  98 fiq 100
                  +++
   CDO71494.1 488 LQE 490
                  655 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.3e-06
  Kinase-like 112 nallllpaasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvl.seve. 204
                   +ll++   ++dl  l ++ qk++      ++  +++l  q++     ++++ +vh ++++ n++l  +g+l+l +f+   a+  + t+ +   ++  
   CDO71494.1 472 HLLLVMECGEIDLAKLLQEQQKEPMDPVWIAYYWKQML--QAVH---VIHEEKIVHSDLKPANFVLV-RGQLKLIDFGianAIANDTTNIQRdHQIGt 563
                  57888888889988777777777777777777777777..5555...5799***************7.7*******9633366677777665333337 PP

  Kinase-like 205 kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPl 250
                  + +  pE +    g  + +++k+  + d+W lG   y +   + P+
   CDO71494.1 564 VNYMSPEAIELPDG--M-RRLKVGRPSDVWSLGCILYQMVYGQPPF 606
                  89999999999888..4.99*****************998766666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.43
  Kinase-like 122 vdleilnkvlqkrsethkkletiarlllTlqlirlaanLqa 162
                  ++ + ++++lq   +  +   +++++ +  q++rl+a+Lq+
   CDO71494.1 719 INPHYMMQLLQYGMQLGRDQPNMSEKEMQEQALRLVAELQK 759
                  455677777777777777888889999999999******97 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.1e-06    0.0054      83     151 ..     475     544 ..     464     559 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
                 EEEE--EETTEEGGBHHHCG.-...HHHHHHHHH.HHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTT CS
        RIO1  83 lvmefigedgvaapklkdve.e...eeeaeelye.evleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQ 151
                 lvme  +   + ++kl + + +   +  +  +y+ ++l++++ +++e ++vH DL   N ++ ++++ +ID++ 
  CDO71494.1 475 LVMECGE---IDLAKLLQEQqKepmDPVWIAYYWkQMLQAVH-VIHEEKIVHSDLKPANFVLVRGQLKLIDFGI 544
                 4555433...44444333331223333344455515566555.556*************************975 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   1.7e-06    0.0044      59     176 ..     439     552 ..     412     560 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
         Kdo  59 vrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 ++E+ llkrL     ++++   +++++   + +  ll     g +dL++ll++ ++  ++    +  +k+  ++++ +h+ ++ H dl + n+ l  ++
  CDO71494.1 439 MNEIGLLKRLDG-NARIIRLFDSEVKQATAGSKGHLLLVMECGEIDLAKLLQEQQKepMDPVWIAYYWKQMLQAVHVIHEEKIVHSDLKPANFVLVRGQ 536
                 556666666643.23444444444444444444433333335889*******98779888888999***************************999987 PP

         Kdo 156 eeeaeiwliDldkarlrlrad 176
                      + liD+  a+  +  +
  CDO71494.1 537 -----LKLIDFGIANAIANDT 552
                 .....99***98777766555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0064        17      23      51 ..     394     423 ..     329     447 .. 0.84
   2 !    9.0   0.0   0.00039         1     177     213 ..     504     544 ..     483     546 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0064
        FTA2  23 diefleyLgkglhsiVlkvkirgk.eYALK 51 
                 ++  l+++gkg +s+V++v  + + +YA+K
  CDO71494.1 394 QYARLDMIGKGGSSRVFRVMNQANeIYAIK 423
                 55668999**********98876659***9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00039
        FTA2 177 qlpkllrdlkklhklgIvvrDlkeenyi....dgkLvDlsa 213
                 + +++l+ ++ +h++ Iv+ Dlk+ n++    + kL+D++ 
  CDO71494.1 504 YWKQMLQAVHVIHEEKIVHSDLKPANFVlvrgQLKLIDFGI 544
                 5689**********************986644446788875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00013      0.33     322     386 ..     515     572 ..     506     579 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
  Pkinase_fungal 322 LflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievl 386
                      + + +i+H D    N +++      + +  LiD+ +a  +++d+++ ++ +++GT+++m+ e +
      CDO71494.1 515 IH-EEKIVHSDLKPANFVLV------RGQLKLIDFGIANAIANDTTNIQRDHQIGTVNYMSPEAI 572
                     45.899**************......78899************99999************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4944.84
//
Query:       CDO71495.1  [L=254]
Description: hypothetical protein BN946_scf184909.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-21   74.1   0.0    1.4e-20   73.6   0.0    1.2  1  cobW        CobW/HypB/UreG, nucleotide-binding domain
      0.002   18.2   0.0      0.004   17.2   0.0    1.5  1  MMR_HSR1    50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.024   13.8   0.0      0.034   13.3   0.0    1.2  1  TIP49       TIP49 P-loop domain
      0.039   14.4   0.0      0.057   13.9   0.0    1.2  1  ABC_tran    ABC transporter
      0.054   13.6   0.1       0.08   13.0   0.1    1.4  1  CbiA        CobQ/CobB/MinD/ParA nucleotide binding domain
      0.071   12.2   0.0       0.11   11.5   0.0    1.3  1  T2SSE       Type II/IV secretion system protein
      0.085   12.9   0.0       0.15   12.1   0.0    1.3  1  TsaE        Threonylcarbamoyl adenosine biosynthesis protein 
       0.09   13.3   0.0       0.12   12.9   0.0    1.4  1  AAA_18      AAA domain
      0.093   12.0   0.0       0.18   11.1   0.0    1.4  1  Zeta_toxin  Zeta toxin
        0.1   12.6   0.0       0.17   11.9   0.0    1.3  1  AAA_5       AAA domain (dynein-related subfamily)
       0.11   12.7   0.0        0.9    9.8   0.0    2.0  2  Roc         Ras of Complex, Roc, domain of DAPkinase
       0.19   12.1   0.0       0.24   11.7   0.0    1.3  1  AAA_16      AAA ATPase domain
       0.24   10.8   0.0       0.33   10.4   0.0    1.2  1  Pox_A32     Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0     1e-23   1.4e-20       3     122 ..      72     190 ..      70     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1e-23
                 EEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.....EEEETTTTECCH.CTT-HHHHHHHHHHHH..TT-SEEEEEECT. CS
        cobW   3 tvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgve....ivelenGciCct.lredllkelealeere..erldviliEttG. 92 
                 ++++G++GsGKT+L  +l+ + r+++++a ++N++  + +D+e+l ++++     i+ +e+G+++++ +red+++++ ale+++     +++++E++G 
  CDO71495.1  72 VGIGGPVGSGKTALTLALCqKLRKEYNIATVTNDIF-TREDQEFLIKNKALppsrILAIETGGCPHAaIREDISANMGALETLQakFGCQILFVESGGd 169
                 789****************8889*************.********9997777899***************************995545799*******7 PP

                 TTTHHHHHTTSHHHHHCCCECEEEEEEETT CS
        cobW  93 laePapvafteeelksdltldavvavvDak 122
                 +++++ +         +  +d +++v+D++
  CDO71495.1 170 NLAANYS---------RELADYIIYVIDVS 190
                 7777777.........999*********94 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-06     0.004       2      87 ..      72     193 ..      71     220 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.9e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE........ETTEEEEEEECGGC............SSHHHHHHH............... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk........lkgkeielvDtpGl............iegaseekg............... 65 
                 v+i G   +GK+ L  al+++  +  +++ +T di +++ +        l  ++i  + t G             +       g               
  CDO71495.1  72 VGIGGPVGSGKTALTLALCQKLRKEYNIATVTNDIFTREDQefliknkaLPPSRILAIETGGCphaairedisanM-------Galetlqakfgcqilf 163
                 8999****************98888888888888855543324333433223569999999974444344433330.......1444444444455555 PP

                 .......HHHHHHHHHC.TSEEEEEEETT..T CS
    MMR_HSR1  66 .......lgkaflalee.adlillvvdas..e 87 
                        l+ ++ +  e ad i++v+d+s   
  CDO71495.1 164 vesggdnLAANYSR--ElADYIIYVIDVSidL 193
                 54444436666664..448*******988331 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.5e-05     0.034      52      91 ..      71     109 ..      64     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevysl 91 
                 +v + Gp g+Gktal +a+ ++l ++   +++ + ++++ 
  CDO71495.1  71 TVGIGGPVGSGKTALTLALCQKLRKEYNIATV-TNDIFTR 109
                 67799******************999877665.4566655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.2e-05     0.057      10      56 ..      68     114 ..      64     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.2e-05
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeles 56 
                 +g +v+i G+ G+GK+ L  +l+++l+++    ++ ++ +++++ e+
  CDO71495.1  68 RGFTVGIGGPVGSGKTALTLALCQKLRKEYNIATVTNDIFTREDQEF 114
                 6789**********************998777777766666655554 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.8e-05      0.08       9      43 ..      79     112 ..      73     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannla 43 
                 G+GKT l+++L++ l + +++++ v  D  +  + 
  CDO71495.1  79 GSGKTALTLALCQKLRK-EYNIATVTNDIFTREDQ 112
                 9****************.**999998877655555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.3e-05      0.11     134     163 ..      74     102 ..      56     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.3e-05
       T2SSE 134 vsGgTgsGKttllyallkeinksderivtv 163
                 + G+ gsGKt l+ al +++ k+  +i tv
  CDO71495.1  74 IGGPVGSGKTALTLALCQKLRKE-YNIATV 102
                 78********************9.999988 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.15      19      50 ..      69     101 ..      45     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                 TEEEEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve.evkS 50 
                 g ++ + G++G+GKT+l+ +l+++l  e ++  
  CDO71495.1  69 GFTVGIGGPVGSGKTALTLALCQKLRKEyNIAT 101
                 4457889*****************987766654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.9e-05      0.12       1      51 [.      72     126 ..      72     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.9e-05
      AAA_18   1 IlltGtpGvGKttlakeL....skrlgf..gvnlrdvakenglllevdpealdeskr 51 
                 +++ G+ G+GKt l+ +L    +k+  +   ++ +d+++ ++ ++   ++al++s++
  CDO71495.1  72 VGIGGPVGSGKTALTLALcqklRKE--YniATVTNDIFTREDQEFLIKNKALPPSRI 126
                 689*********9988885332333..344777777777766666666665555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.18      18      54 ..      71     107 ..      58     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdl 54 
                  + +gG  G+GK++l  +l ++l+++ n+ ++  D +
  CDO71495.1  71 TVGIGGPVGSGKTALTLALCQKLRKEYNIATVTNDIF 107
                 5669**************************9999965 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.17       6      36 ..      76     106 ..      72     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 --SSSSHHHHHHHGGGGBS--EEEEE--TT- CS
       AAA_5   6 GppGtgKselaerlaaalnreveyvqltrdt 36 
                 Gp G+gK+ l+  l++ l++e+++   t d+
  CDO71495.1  76 GPVGSGKTALTLALCQKLRKEYNIATVTNDI 106
                 9*****************7777776666654 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00065       0.9       6      41 ..      76     111 ..      72     123 .. 0.86
   2 ?    0.1   0.0      0.64   8.9e+02      44      66 ..     222     244 ..     207     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00065
                 SSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEEC CS
         Roc   6 GdsgvGKtsllkrfvedkfsekekstigvdfltkev 41 
                 G  g+GKt l   ++++  +e + +t+  d++t+e 
  CDO71495.1  76 GPVGSGKTALTLALCQKLRKEYNIATVTNDIFTRED 111
                 7889**************************999864 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.64
                 SGGCTTBTTTTCEEEEEEEE-SG CS
         Roc  44 ikgvendkkvkkvklniWDtaGq 66 
                 +k+ +  ++v ++ l+ W taG 
  CDO71495.1 222 VKQGKGVDDVAELILAAWRTAGS 244
                 33334446788999*******95 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00018      0.24      27      55 ..      72     101 ..      59     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      AAA_16  27 vllsGesGvGKsslvrellralekdg.gif 55 
                 v + G+ G+GK++l  +l + l+k++ + +
  CDO71495.1  72 VGIGGPVGSGKTALTLALCQKLRKEYnIAT 101
                 6689********************952222 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00024      0.33       4      44 ..      60     100 ..      57     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
     Pox_A32   4 FdresLlkkpFrlalvGgsGsGktvyLlsLlrtlvkkykhi 44 
                 ++ ++  ++ F + + G  GsGkt+  l+L ++l k+y   
  CDO71495.1  60 YSNRHFEERGFTVGIGGPVGSGKTALTLALCQKLRKEYNIA 100
                 5666778889999999********************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1820.19
//
Query:       CDO71496.1  [L=297]
Description: hypothetical protein BN946_scf184909.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-22   77.8   0.0    5.6e-20   72.1   0.0    2.1  1  Abhydrolase_1    alpha/beta hydrolase fold
      1e-13   52.4   0.1    1.3e-13   52.0   0.1    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
     0.0019   17.5   0.0      0.018   14.3   0.0    2.1  2  Hydrolase_4      Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.14   11.0   0.1       0.21   10.5   0.1    1.3  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.3e-23   5.6e-20       1     254 [.      36     278 ..      36     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.3e-23
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    pv+++lhG+p ss  +++  l+p La+ +++v+++D +G+g++  + +    +y++as+a    ++ldal++ k+++  +++G  +++   +e p 
     CDO71496.1  36 PVILLLHGFPTSSFQYRN--LIPRLAE-KYRVLAPDFPGYGFTIVPESRK-YEYTFASLAQTTLAFLDALKVAKFAVYVFDYGAPTGFRIMLERPG 127
                    79****************..*******.*****************99976.8******************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH.HCHHHCCHHHHHHHCHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf.pdkskrfpssgsdnasslatgalksieq 191
                     + a+++ ++    +++ e   q  +s p  +  +  +   +++  l+++e +  ++   + d+    p+++      + +++ ++a+ +l+++  
     CDO71496.1 128 AITAIISQNG----NAYVEGLGQPFWSGPQKAWEDPSPANLKALEYLVNFETTKWQYTNGAPDPSSVpPETY--HLDYYLMTRPGNAQIQLGYLVN 217
                    **********....7777777777777777777888888888888888888888888888866553342222..2222344444444444444444 PP

                    HHHC.....CHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 192 wptt.....dsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafl 254
                    ++t+     d+ k++++ r       ptl ++g++D+++ p   e ++++ p+   v++ dagH+a+ 
     CDO71496.1 218 YKTNiplypDFQKYFREHRP------PTLAVWGRHDQIFVPPGAEAYKRDNPD-AIVKLLDAGHFALE 278
                    44432222234444444444......***************************.***********986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1     3e-17   1.3e-13       1     213 [.      38     279 ..      38     286 .. 0.55

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3e-17
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST...S-GGCS..--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHH....HHHHHHHCC CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG...rsdppp..ldledladl.aalldelaagggpvvlvGHSlGGa....lalaaapla 86 
                    +lllHG+++s  s+++++L ++la+ ++vlapD+pG+G    ++++   ++++ la+  +a+ld+l+    ++ +   ++G+     ++l+ +p+a
     CDO71496.1  38 ILLLHGFPTS--SFQYRNLIPRLAEKYRVLAPDFPGYGftiVPESRKyeYTFASLAQTtLAFLDALK--VAKFAVYVFDYGAPtgfrIMLE-RPGA 128
                    89****9995..55555*********************55522444422555554555699999997..8888********7533333333.3333 PP

                    ........EE.EEES-..----TTTS----TTHHHHHH..............TT-CCCCHCCH.S-HSCCCCHHHCCCCHCHCCCGHHHHCC.... CS
  Abhydrolase_6  87 ......lvvg.vlldppptalpagllaaalelllalla..............llrllawlsre.plprlfladedadaawrarlarlaalla.... 156
                          +  g  ++++        l++++++ +++++               ++ +  w  ++ +++++ +++e+++ ++  + +++ a+      
     CDO71496.1 129 itaiisQ-NGnAYVEG--------LGQPFWSGPQKAWEdpspanlkaleylvNFETTKWQYTNgAPDPSSVPPETYHLDYYLMTRPGNAQIQlgyl 215
                    4433322.12455555........333333333333332211111222222222225666444745557777777545555555555544442222 PP

                    .......HHCHTTCCHHTT-TTGCEEEC.TT-C.HHHHCHHCCCHSTTEEETCE...SSS-HHHHS CS
  Abhydrolase_6 157 .......glgllpaaawadlpvpllvlg.geDp.lvprllerllaqagarlpvvlpgaGHlphlee 213
                           +l++     ++  ++p+l ++   D+  vp+ +e++ + +   + v l +aGH+ ++  
     CDO71496.1 216 vnyktniPLYPDFQKYFREHRPPTLAVWgRHDQiFVPPGAEAYKRDNPDAI-VKLLDAGHFALE-T 279
                    222222211122222333333333444537788*99999999999333333.6799****9987.4 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     4e-06     0.018       5      72 ..      36     104 ..      32     143 .. 0.78
   2 ?    0.9   0.0      0.05   2.3e+02     191     215 ..     236     260 ..     224     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-06
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse..gkrghvpsfddyvdDlaafvekvkee 72 
                   v++l+HG+  +s +y +l+ +La+  + v+a D  G+G +     r +   f ++ +   af++++k  
   CDO71496.1  36 PVILLLHGFPTSSFQYRNLIPRLAE-KYRVLAPDFPGYGFTIvpESRKYEYTFASLAQTTLAFLDALKVA 104
                  589********************97.5************9988777888888888888888888877744 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.05
  Hydrolase_4 191 tlPllllhGeaDkvvdpeasrelye 215
                  + P+l + G +D++  p +++++ +
   CDO71496.1 236 RPPTLAVWGRHDQIFVPPGAEAYKR 260
                  579***********99988876655 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.7e-05      0.21      13      52 ..      31      69 ..      25     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.7e-05
  Chlorophyllase2 13 eageYpvllflhGylllnslYsqlLkhiashgfivvapql 52
                     +  + pv+l+lhG+   +  Y++l+ ++a  ++ v+ap +
       CDO71496.1 31 DPSALPVILLLHGFPTSSFQYRNLIPRLAE-KYRVLAPDF 69
                     55678***********************96.799999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2228.99
//
Query:       CDO71497.1  [L=1083]
Description: hypothetical protein BN946_scf184909.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-22   78.3   0.0    4.9e-22   78.3   0.0    4.4  3  HA2          Helicase associated domain (HA2)
    3.1e-20   72.3   0.4    7.2e-20   71.1   0.4    1.7  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    1.2e-15   57.8   0.0    4.1e-15   56.1   0.0    1.9  1  Helicase_C   Helicase conserved C-terminal domain
    1.7e-07   31.2   0.1    2.7e-06   27.3   0.0    2.8  3  DEAD         DEAD/DEAH box helicase
    7.8e-05   22.5   1.0    0.00018   21.3   0.0    2.1  2  AAA_30       AAA domain
    8.9e-05   22.8   0.1    0.00057   20.2   0.0    2.5  2  AAA_22       AAA domain
     0.0015   18.9   0.6     0.0053   17.1   0.1    2.2  2  AAA_19       AAA domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.034   13.2   0.0    1.7  1  T2SSE        Type II/IV secretion system protein
      0.074   13.0   0.0          4    7.4   0.0    3.0  2  ResIII       Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.027        54      45      96 ..      21      89 ..      14     105 .. 0.64
   2 ?  -12.8  14.0         9   1.8e+04      61      61 ..     168     168 ..     108     246 .. 0.60
   3 !   78.3   0.0   2.4e-25   4.9e-22       1     108 []     823     912 ..     823     912 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.027
         HA2 45 egcldevitivAalsv.eeifleeneeekeeeee..............e..eekakkkrkeeekarrkl 96
                + ++d+v++ ++  +  e +f++ n++   ++ +              +  ++ka+++ ++++++++k+
  CDO71497.1 21 RSIVDYVVACASSAKSpEALFVQLNASGLPDTPDahnfaqevyarvprKskQKKAADSARKQAEQEAKA 89
                468999999998777559999999999988888788887766655544133333333333333333333 PP

  == domain 2  score: -12.8 bits;  conditional E-value: 9
         HA2  61 e 61 
                  
  CDO71497.1 168 M 168
                 0 PP

  == domain 3  score: 78.3 bits;  conditional E-value: 2.4e-25
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsv.eeifleeneeekeeeeeeeekakkkrkeeekarrklah 98 
                 AlelL+algAL+++g+lT+lGr+mae+P++p+l+k ++a+ +   +c+dev+ti+++l+  +++f ++++               k+  +++ar+++++
  CDO71497.1 823 ALELLYALGALNDRGELTKLGRRMAEFPVDPMLSKAIIASEQ--YHCTDEVLTIISMLQEsGSLFYRPKD---------------KKLHADQARQNFVR 904
                 89**************************************55..5**************65999999985...............45667777888899 PP

         HA2  99 kdaegDhltl 108
                 ++  gDh+tl
  CDO71497.1 905 AG--GDHFTL 912
                 99..999997 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.4   3.6e-23   7.2e-20       1      83 []     972    1052 ..     972    1052 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 3.6e-23
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTTT CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagqi 83  
                   ++++++aG++ + a  ++s+ +y+t++t++ v+ihpsS l++   + + + v+y+elv t+k y+r+++ i p+wLl++a+++
   CDO71497.1  972 IQKAITAGYFYNTAALQRSGDSYRTMKTNQTVYIHPSSSLFN--HTPPVKAVLYYELVMTSKSYMRQVMEIKPQWLLEVAPHY 1052
                   799**************************************8..567778******************************986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   2.1e-18   4.1e-15      11     111 .]     634     761 ..     622     761 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.1e-18
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSH.. CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekk........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnv.. 97 
                 ++++ +g+il+f++ +d++e   + l+e+         ++ +++++++lp++ + +i+e   +g ++v++at++ae++i+i++v +Vi+ ++  +n   
  CDO71497.1 634 HTTQPKGDILVFLTGQDEIEAaQENLQETAralgnkikELIICPIYANLPSEMQAKIFEPTPEGARKVVLATNIAETSITIDGVVFVIDPGFVkQNSyn 732
                 68899************8877744443333344444679*****************************************************9633256 PP

                 ...............HHHHHHHTTSSSTT CS
  Helicase_C  98 ...............tsyiqriGRtgRag 111
                                +s++qr+GR+gR+g
  CDO71497.1 733 prtgmsslvvvpcsrASANQRAGRAGRVG 761
                 79999999*******************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-09   2.7e-06       5     171 ..     437     589 ..     433     593 .. 0.77
   2 ?   -0.8   0.0      0.56   1.1e+03      72     112 ..     930     970 ..     917     987 .. 0.75
   3 ?   -1.6   0.0         1     2e+03      42      62 ..     993    1014 ..     975    1024 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdivv 102
                 ++ +++i + + ++v aeTGsGKT+     + ++ y   + +g k+ +  P r  a  ++ ++ + + + ++++v   i  ++ ++       ++ + +
  CDO71497.1 437 DQLLDAIKEHQVLIVVAETGSGKTTQLPQYLHEAGY---TANGMKVGCTQPRRVAAMSVAARVAEEMGTkVGYEVGYSIRFEDCTS------DKTVLKY 526
                 56778888999999***********98888887776...69*******************99988777425544443333333333......3356689 PP

                 EEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 103 gtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                 +t g+l++ + t+  +l   + l++DEa++   +   d + ++++ +++   +     ++++ SAT+  +
  CDO71497.1 527 MTDGMLLREFLTEP-DLAGYSALIIDEAHERTLS--TDILFALVKDIARFRPEL----RLLISSATMDaE 589
                 9*******775555.6*************98776..799999999996555543....4*******9844 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.56
                 TTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  72 kyidlrvlliiggvaardqlskldngvdivvgtpgrlddll 112
                  +  l+ +++    + rdql+ l ++v+ivv       d++
  CDO71497.1 930 YEQFLQFKSLSRARDIRDQLAGLCERVEIVVESNPNTNDIT 970
                 33337777778889999******777*****9887777765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
                  S.TTSTS-EEEEEESSHHHHHH CS
                  x.xxxxxxxxxxxxxxxxxxxx RF
        DEAD   42 t.kgktgpkalivePtreLaeq 62  
                  + ++ ++++++++ P+ +L + 
  CDO71497.1  993 SyRTMKTNQTVYIHPSSSLFNH 1014
                  26678899**********9876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.4   2.8e+03      39      81 ..     207     249 ..     198     283 .. 0.72
   2 !   21.3   0.0   9.3e-08   0.00018      16     111 ..     444     569 ..     436     580 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
      AAA_30  39 reaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk 81 
                 ++++e++  +  g+A +++  ++La++++++++ + +l +r +
  CDO71497.1 207 KKVVEDRSSKASGAAAEAAERRRLADDAEARSRAMPSLRERSR 249
                 4566666667778888888888888888888887777776666 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 9.3e-08
      AAA_30  16 sgdrvavltGpAGtGKttalkal..reaweaag........grviglAptgkaAkvLaeelgi.........eastiakllkrlk.........grarl 86 
                 ++++v ++++  G+GKtt l ++  ++ ++a+g        +rv++++  +++A+++++++g          ++ + + +lk ++          + +l
  CDO71497.1 444 KEHQVLIVVAETGSGKTTQLPQYlhEAGYTANGmkvgctqpRRVAAMSVAARVAEEMGTKVGYevgysirfeDCTSDKTVLKYMTdgmllreflTEPDL 542
                 4567****************99875556777789************************98886434344444333333333333378888888855678 PP

      AAA_30  87 epgtllivDEagmv..dtkqlaallka 111
                 +  + li+DEa     +t+ l al+k 
  CDO71497.1 543 AGYSALIIDEAHERtlSTDILFALVKD 569
                 8889******96432255555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.2   8.5e+03      40      89 ..      37      90 ..      28     101 .. 0.56
   2 !   20.2   0.0   2.8e-07   0.00057       4     114 ..     445     569 ..     440     584 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.2
      AAA_22 40 pevvfvtlpsst.....sskdllrellralglelkaerlsseellealeqalrar 89
                pe +fv+l++s+     +  ++++e+   + ++ k   +  +  +++ eq ++a 
  CDO71497.1 37 PEALFVQLNASGlpdtpDAHNFAQEVYARVPRKSKQ-KKAADSARKQAEQEAKAL 90
                566666666666656556666666666666655555.333333334444444443 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.8e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka.............erlsseell.ealeqal 86 
                 ++++l+v++e+G+GKTt l ++l+++          +  ++v ++++      +++ ++++++g +  +                 ++ +   +l + +
  CDO71497.1 445 EHQVLIVVAETGSGKTTQLPQYLHEAG-------YTANGMKVGCTQPRrvAAMSVAARVAEEMGTKVGYevgysirfedctsDKTVLKYMTdGMLLREF 536
                 6899*********************94.......35666677788887778888888888888887777888888888666533333333344444444 PP

      AAA_22  87 rarav...ielliiDEaqh..lrseealeeL.rs 114
                  +  +    ++liiDEa+   l s ++l  L ++
  CDO71497.1 537 LTEPDlagYSALIIDEAHErtL-STDILFALvKD 569
                 4444478889********9444.65555555354 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.3   2.7e+03      92     118 ..     365     393 ..     236     409 .. 0.57
   2 !   17.1   0.1   2.7e-06    0.0053       8     115 ..     444     557 ..     438     577 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
      AAA_19  92 e..eaeeekklqeeellivDEfqdvd.elq 118
                 +    ++++ + + +  + DE+q ++  l+
  CDO71497.1 365 KvgALDRQEIV-DDYEYVFDESQTIQfVLE 393
                 23223344444.666667788888875554 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.7e-06
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelgg.vkp.....eeillvaftgrAakelrerlaalgae........atTiHrlalldfddlltealelle 92 
                  +++vl+v+a  G+GKT+ l + ++++  + + +k+     +++++++++ r a+e+ +++   g e         +T  +  +l++ ++ +       
  CDO71497.1 444 KEHQVLIVVAETGSGKTTQLPQYLHEAGYTANgMKVgctqpRRVAAMSVAARVAEEMGTKV---GYEvgysirfeDCTSDKT-VLKYMTDGMLLR---- 534
                 46899***************99888775444302224444499999999999999999888...333446666664555544.333333332334.... PP

      AAA_19  93 eaeeekklqeee.llivDEfqdvd 115
                 e  +e +l +++ +li+DE+ + +
  CDO71497.1 535 EFLTEPDL-AGYsALIIDEAHERT 557
                 44456788.7777******98754 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.034     117     152 ..     434     469 ..     379     477 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttllyallke 152
                 ++++ l  a++e+++++v   TgsGKtt l   l+e
  CDO71497.1 434 QYRDQLLDAIKEHQVLIVVAETGSGKTTQLPQYLHE 469
                 5667788899*******************9888877 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.002         4      21      39 ..     425     461 ..     406     474 .. 0.70
   2 ?    1.6   0.0      0.12   2.4e+02     129     145 ..     541     557 ..     516     587 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.002
                 ....................TTSEEEEEESTTSTHHH CS
      ResIII  21 s..................krdkrglikmaTGtGKTl 39 
                 +                  k+++ ++++++TG+GKT 
  CDO71497.1 425 EtrkslpiyqyrdqlldaiKEHQVLIVVAETGSGKTT 461
                 2333355577777777776788888899********6 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
                 HTTT-SEEEEETGGGTT CS
      ResIII 129 lrdrfdviiiDEaHrlg 145
                 +   +  +iiDEaH  +
  CDO71497.1 541 DLAGYSALIIDEAHERT 557
                 44555689******865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1828  (0.101958); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.47
# Mc/sec: 6986.51
//
Query:       CDO71498.1  [L=503]
Description: hypothetical protein BN946_scf184909.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-74  251.7   0.0    4.6e-72  243.4   0.0    2.0  1  Questin_oxidase  Questin oxidase-like


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.4   0.0   2.6e-76   4.6e-72       1     340 []      53     427 ..      53     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 243.4 bits;  conditional E-value: 2.6e-76
  Questin_oxidase   1 fhNHlpHhllAlyalGAsaeqlqaaYeenas.......yqrpaepsp..........ekiteenwrdhLgdeeyyrayldFFedeleekgwkev 77 
                      fhNHl+Hh+lA+y+lGA+++ lq++Y+e+ +               +          e+i+ +nw+++Lgd ++y++yl+FF++e++++g+ e+
       CDO71498.1  53 FHNHLSHHILAAYDLGAPSALLQKIYDEEGKdpwdmyiL-------NrkggtienleEEISVQNWTKFLGDGKFYPSYLNFFTREVAQYGAGET 139
                      9***************************99747666652.......2233334456699*********************************99 PP

  Questin_oxidase  78 leeylfsnegaeellsrlfggllHPlIhlGyglefgqpalvaeg.....................LAqaavhyd........sdpse.llsaea 141
                      le+                   +HPlI +Gy++ef+++a+va+g                     LAq+avh+         ++p++ +     
       CDO71498.1 140 LER-------------------VHPLIKTGYAVEFQSDAMVAQGnlvpsptmqegnilnvipftaLAQTAVHEAfrpelfdlTNPPPaP----- 209
                      975...................6**************************************************7665555542222222..... PP

  Questin_oxidase 142 as.........sraessegsslleilerilkderldaa.arpgned...ddkirdgvlkraadeileyanawkvseeedkeeleekleeliwaa 222
                       +         s++e+s+g sll+il+++++++ +++  +    +d   + ++r+++   +++ei ++ + w++++++ ++el+ek+eel+w+a
       CDO71498.1 210 -EtldykhsasSHREPSKGHSLLSILRQVYDSDIMKPVmPYD--PDallSARFRAACADGRPEEIRRLSALWQIDTSRGQAELDEKVEELLWTA 300
                      .1233333332477899999********99999999884222..33355667777777779*************9998899************* PP

  Questin_oxidase 223 tllyaaaglkkepkkpkyDFflmHlvTsslalrsllallpsklspeskarllraywrlvllvyvargrpeldldsikeyksa............ 304
                      tll++  g  + ++kp++DFflmH++++sl+++slla++p+    eska+llra + ++l+++ +rgrp++d++ +  y++             
       CDO71498.1 301 TLLLVGSG--RRGHKPRLDFFLMHMLNASLFVPSLLAAIPT---MESKATLLRAIVPVLLIYLTVRGRPRIDAELVLTYTDTprppnerlpepd 389
                      *****966..679**************************99...999*******************************9999************ PP

  Questin_oxidase 305 .....seaelkkgndwktviqrsasaikhdDeHviKlvral 340
                           +++++++ n+w  +++   s+++++D+H+ K++r+l
       CDO71498.1 390 asaigKPQDSADFNPWPGIVA---SVLHAPDAHTLKAIRVL 427
                      *****77778889********...999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3710.77
//
Query:       CDO71499.1  [L=870]
Description: hypothetical protein BN946_scf184909.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-48  164.0   0.0    1.9e-47  162.0   0.0    1.9  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.0   1.1e-51   1.9e-47      34     407 ..     183     635 ..     134     636 .. 0.77

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 1.1e-51
  Pkinase_fungal  34 eeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptiv..te.sdgr 125
                     +++++k+   q+  yar+vf+ q+ R  +i f++ g ++rl + DRsG ++++ +d  ++p+ + +++  +  ++++ LGlDpt    t+ sd+ 
      CDO71499.1 183 DAQTRKQVRGQVIDYARKVFEYQH-RTSLIFFIVIGRRFRLSRWDRSGTIVTRAVDYVEQPHVLCEILWYMGRLSNEALGLDPTARriTRgSDDY 276
                     3346888899***********995.777899****************************************************987876677777 PP

  Pkinase_fungal 126 rsyei..............................................kaeeeketekleleeplarqraivgRgTtcwrarkegergkeyv 174
                     +++++                                              + ++e + +++ + +p ++   + gRgT+ + a   ++   ++v
      CDO71499.1 277 KQMYLaslavtsdvehkeatltspipgdavftyvrdmfraslvptfpyyrlEVPDEGRMHSFLVGKPNFQAPGMAGRGTRGYVALDAETG--RFV 369
                     788878*********************************************999******************************997665..565 PP

  Pkinase_fungal 175 .vKdsWrdaerk..sEaelLkkaeergvegvarlvahedveekdddi.aei.Rkgldvtkaekfrskrkvvsssssqe..lsskaevklkksess 262
                      +Kd+Wr        E+ +Lk+ ++++v +v +l++h d+ e+  ++ +   Rk+l+ + + + + ++     s+ q+  +ss++ v++k   s+
      CDO71499.1 370 wLKDAWRTHYEFvdAEGSVLKQLNDAKVVNVPTLICHGDILEQITETpTWWeRKHLSQSAE-TGSGTTP----SPVQPaaSSSRTLVDPKTAFSK 459
                     49*****7665334**************************966666532221333333222.2222222....2222222333333333333332 PP

  Pkinase_fungal 263 kkvekr.svdssvstskrsrlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilit.....dskke..... 346
                     ++ + + +++ +  ++++ +l+   h r+v+++vG  + ++++ ++ll+++ D++ +h++ + +a+i+HrD+S +Nili+               
      CDO71499.1 460 GTKRGAsEMEDDGGRREECPLRWHRHYRIVVKEVGIRLVDFQHGRQLLQVIFDCVHAHQQAVVQANIMHRDVSGGNILILprdmiH---Pksgkl 551
                     222222022222233333336667788*****************************************************555541...055567 PP

  Pkinase_fungal 347 .gerkglLiDLDlakelsddssesgare.....................rtGTleFmaievlkgee..HsyrhDLESffyvllwi 407
                       + +g+L+D +l k +++  + s +r+                       GT +Fm+  vl++++   ++ + LESff v l+ 
      CDO71499.1 552 vMKWRGILVDWELSKPTGK-AALSRPRQpertasvlsfiisdyiilisyPQGTWQFMSAAVLSDHSkaIEISDELESFFHVTLYY 635
                     79*************9996.44444444455666777777777777777**************543445678*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5718.43
//
Query:       CDO71500.1  [L=124]
Description: hypothetical protein BN946_scf184909.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 972.44
//
Query:       CDO71501.1  [L=657]
Description: hypothetical protein BN946_scf184909.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-125  417.6   0.0   4.4e-125  417.2   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.2   0.0  2.5e-129  4.4e-125       1     324 []      25     352 ..      25     352 .. 0.94

  Alignments for each domain:
  == domain 1  score: 417.2 bits;  conditional E-value: 2.5e-129
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegel.eeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 F+n+++L++tiD++p+gd++w++++v+++g+l +++ p+wm +eye+wfrdp++++ ++++npdfad++d++P+r y   + ++r+y+++m+gdwaw+ 
  CDO71501.1  25 FANHEHLYATIDDIPQGDVPWQTFSVTYNGPLpTGAMPSWMIREYEVWFRDPRQALLNQYSNPDFADDIDWVPKRIYV--QGDKRQYRDFMSGDWAWNE 121
                 99****************************99889*******************************************..4569*************** PP

     Plavaka  99 q..ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipk.....l..kkikkskefrklfkrqlfHacl 187
                 +  ++e+p  +ga l+ +il+sDKTt+sv+tg++e+yP+Yls G ++++vrr ++rna++l+++L+ipk     l  ++++++++frk f+r+lfH++l
  CDO71501.1 122 AdlLAEDPdLHGAALLTLILGSDKTTVSVATGQNEYYPLYLSNGGVRNNVRR-SHRNAITLIGFLAIPKsmyamLseRHHQNDATFRK-FRRELFHTSL 218
                 **87788779******************************************.**************774444433457788888888.********** PP

     Plavaka 188 arilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglkgv 286
                 + il+pL++ +++ +v++cadgh+rrv++ l++yiaDyp qvl+ac+vqgwC++cta++++l++  + ++r++++ +e+l++++d l++lw++yg++g+
  CDO71501.1 219 RVILDPLRQSMTTYEVLRCADGHYRRVVFSLGPYIADYPKQVLLACTVQGWCARCTAPPDNLDTGPA-TRRSQQH-TEALRDTFD-LRTLWDDYGVVGD 314
                 **************************************************************99644.5566555.677799999.************* PP

     Plavaka 287 iepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                  +pF+e +pradi+e+l+pDlLHq+ikg+fkdHlv+Wv
  CDO71501.1 315 LKPFTELFPRADIYEMLSPDLLHQVIKGTFKDHLVTWV 352
                 *************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 3896.53
//
Query:       CDO71502.1  [L=650]
Description: hypothetical protein BN946_scf184910.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   15.0   0.2          3    8.2   0.2    3.0  3  TSC22     TSC-22/dip/bun family
      0.027   14.5   0.1      0.053   13.6   0.1    1.4  1  DUF1664   Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2   0.00033         3      25      46 ..      59      80 ..      58      89 .. 0.85
   2 ?    3.2   0.0     0.012   1.1e+02      11      30 ..     120     139 ..     117     144 .. 0.90
   3 ?   -2.9   0.0      0.98   8.8e+03      16      31 ..     210     225 ..     209     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00033
       TSC22 25 eLeernseleeENslLkalasp 46
                 L++ +++l+ EN+ L++ + +
  CDO71502.1 59 SLMDAIQQLQAENRELRERMDE 80
                69***************87765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.012
       TSC22  11 AVrEeVevLkekIkeLeern 30 
                 AV++e+  L+ k+ eLe + 
  CDO71502.1 120 AVNNEIPFLRRKVDELEGKL 139
                 9***************9876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.98
       TSC22  16 VevLkekIkeLeerns 31 
                 Ve+L+  + e +e+++
  CDO71502.1 210 VENLRGWVPEILEKIR 225
                 8999999999998876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.9e-06     0.053      37     118 ..      58     140 ..      56     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.9e-06
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl.seigedvesvkeavegleskle 118
                 +sl da++++  +  ++ e + ++ r + s+i ++ +  +  ++ +  ++++++ev + l +++++++  +++ v +le+kl+
  CDO71502.1  58 KSLMDAIQQLQAENRELRERMDEQTRTFDSKIFQLHDGFEMLMANQLTLRKDISEVYDVLgDAVNNEIPFLRRKVDELEGKLT 140
                 799*****************************************************999845799***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1423  (0.0793686); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4176.76
//
Query:       CDO71503.1  [L=596]
Description: hypothetical protein BN946_scf184910.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.02   14.3   0.0    1.3  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-06      0.02      98     145 ..     495     551 ..     471     558 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE........EEE-SGTTS CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge........lKitDFGla 145
                   + ++++ + ++le lH+k+++H D+   Ni+   ++ e         +++DF+ a
  CDO71503.1 495 PFLPRMMEDVKTALEVLHAKRLVHGDIRRPNIIPVrRDPEnpveiitgAMLVDFDWA 551
                 5566899*************************9873333367777777888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 3694.82
//
Query:       CDO71504.1  [L=614]
Description: hypothetical protein BN946_scf184910.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   12.9   0.0      0.085   12.2   0.0    1.2  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.7e-06     0.085     101     133 ..     514     546 ..     481     574 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLide 133
                  ++++ + ++le lH+k+++H D+   Ni+   
  CDO71504.1 514 TRMLNDVKTALEVLHAKKLVHGDIRRPNIIPVY 546
                 57888999*********************9763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4422.45
//
Query:       CDO71505.1  [L=613]
Description: hypothetical protein BN946_scf184910.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00021   20.8   0.0    0.00035   20.0   0.0    1.3  1  Pkinase         Protein kinase domain
    0.00085   18.2   0.0     0.0014   17.5   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0014   18.0   0.0     0.0032   16.8   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0041   17.1   0.5       0.15   11.9   0.3    2.4  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.024   14.0   0.1      0.035   13.5   0.1    1.1  1  UvrD_C          UvrD-like helicase C-terminal domain
      0.053   12.8   0.0       0.22   10.8   0.0    2.0  2  EcKinase        Ecdysteroid kinase
       0.15   12.1   0.1       0.27   11.2   0.1    1.4  1  Pam16           Pam16
       0.16   11.6   0.0       0.33   10.5   0.0    1.5  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00035      74     146 ..     495     568 ..     447     573 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
                 EEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSE CS
     Pkinase  74 ylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlak 146
                 ++v+++v+g+ ++ +   k+  ++   + +++ + ++l+ lH+kg++H D+   Ni+  ++++     +++DF+ a 
  CDO71505.1 495 MVVMDIVPGK-VTAAS--KQYAKQPLPSAMIRDVETALKALHEKGLVHGDVRRPNIMAITRDDgvtgAMLVDFDWAG 568
                 5677777755.22222..234455555688999************************88555567999*****9986 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.3e-07    0.0014     312     362 ..     522     570 ..     509     573 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.3e-07
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakel 362
                     +rD+ ++++ L+ ++g++H D+   Ni+   ++++g    +L+D+D+a e 
      CDO71505.1 522 IRDVETALKALH-EKGLVHGDVRRPNIMAI-TRDDGVTGAMLVDFDWAGEN 570
                     789999******.***************88.678889999*******9775 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06    0.0032     114     169 ..     511     567 ..     503     572 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
         Kdo 114 e.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                 +  ++ l  a++++v ++ + lh+ g+ H+d+   ni+  +++++   ++l+D+d a
  CDO71505.1 511 QyAKQPLPSAMIRDVETALKALHEKGLVHGDVRRPNIMAITRDDGVTGAMLVDFDWA 567
                 335678999**********************************999********976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        26      44     106 ..     469     533 ..     440     534 .. 0.78
   2 !   11.9   0.3   6.8e-05      0.15     159     196 ..     528     567 ..     515     569 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
                 HHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHH CS
         APH  44 lrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalh 106
                  r Lak+++  +P+++a+   + + g+ ++++  vpg++ +    +  ++   ++++++  +l+alh
  CDO71505.1 469 HRELAKRNPpLAPKLHAC--VRLVGGTTMVVMDIVPGKVTAAskqYAKQPLPSAMIRDVETALKALH 533
                 38899999978******6..77777888**************9666666677888888888888888 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.8e-05
                 H--SSS-EEEE-SS-SGGGEEEC..TTEEEE..E---TT- CS
         APH 159 llpgelptvllHgDlhpgNllvdpddgrvtG..viDfeda 196
                  l +  +++l+HgD + +N++   +d+ vtG  ++Df+ a
  CDO71505.1 528 ALKALHEKGLVHGDVRRPNIMAITRDDGVTGamLVDFDWA 567
                 3333458**************9988888877557888855 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.6e-05     0.035     125     269 ..      20     235 ..      15     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
      UvrD_C 125 nkqdkialkrilkrlvlgigkatveriseelkklglsltDfikedtleygeeFieliraleeknl.................................. 189
                 n +++ + + +l+++ ++ g++  er+  +lk++ ++l  +++  ++++ ++ +  +r+++  ++                                  
  CDO71505.1  20 NAEETDTASDVLSKFWKEWGDRVEERF-PKLKRAEVKLLRLLEPLDSTFEDQVSAQMRKYDTTKKqtlrphdvigpydpdhltfeiaahpwvlslghkk 117
                 666677778899***************.*********************************99999********************************* PP

                 .................................xxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
      UvrD_C 190 .................................elllkkiektaeer...............qalvskyadlfkelaeklaelkekseskrkkee.kle 239
                                                  e                             a vs y+ +f++++ekl++l+e + +++  ++  l 
  CDO71505.1 118 ntvaedlhdgmvqrireapspsqiarsihtykaE------------HekgalfyngrpleqsAAPVSVYNLAFAKIQEKLNNLNEMNIRAEV-TSfYLA 203
                 ****999999888888888887655554444440............2445556666666666899********************9999983.334778 PP

                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
      UvrD_C 240 nlreLysllkelekkeeeee..veeklneile 269
                  + +L++ ++el ++e+  e  v+++++++le
  CDO71505.1 204 GISQLFRDACELYDDEKAREqvVMNQIRKLLE 235
                 88888888888777554433112333444444 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.77   1.7e+03     148     196 ..     187     234 ..     168     249 .. 0.63
   2 ?   10.8   0.0   9.9e-05      0.22     216     246 ..     536     565 ..     500     568 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.77
    EcKinase 148 glleedyvssalkeafeelleellkaalealreelpelekeaekleklk 196
                 +l e++++++ +++++ + +++l++ a+e++++e ++ +   ++++kl 
  CDO71505.1 187 NLNEMNIRAE-VTSFYLAGISQLFRDACELYDDEKAREQVVMNQIRKLL 234
                 4444444444.57777777778888888888666655554445555554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.9e-05
    EcKinase 216 vlnHGDlwvnNimfkydeegepedvilvDFQ 246
                  l+HGD+ + Nim    ++g ++ ++lvDF 
  CDO71505.1 536 GLVHGDVRRPNIMAITRDDG-VTGAMLVDFD 565
                 599***********887775.*********5 PP

>> Pam16  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012      0.27      23     107 ..     130     215 ..     118     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                 XXXXXXX.XXXXXXXX.XXXXXXXXXXXXXXXX-HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHH..HHHHHHHHHH CS
       Pam16  23 ralrqeiaaaraaadartsasereaaksnlkGisleeslkilnveedlnreevekryehlfevndkskGGslylq..skvfrakerl 107
                 + +r++ + ++ a + +t  +e e+++  ++G  le+s   + v + l   +++++ + l e+n +    s+yl   s++fr +  l
  CDO71505.1 130 QRIREAPSPSQIARSIHTYKAEHEKGALFYNGRPLEQSAAPVSVYN-LAFAKIQEKLNNLNEMNIRAEVTSFYLAgiSQLFRDACEL 215
                 5567777778888999999999999999****************99.***************************6558999965444 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00015      0.33      82     139 ..     495     549 ..     489     564 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                 EEEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEE CS
        RIO1  82 vlvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlv 139
                 ++vm+ +   g   +  k++  ++ + +++   +e+  k+++e glvH+D+   N++ 
  CDO71505.1 495 MVVMDIVP--GKVTAASKQYA-KQPLPSAMIRDVETALKALHEKGLVHGDVRRPNIMA 549
                 68999999..55555556666.44666666666777888999**********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3853.65
//
Query:       CDO71506.1  [L=480]
Description: hypothetical protein BN946_scf184910.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-35  120.9   0.0    8.2e-35  120.4   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    7.9e-12   45.1   0.0    1.4e-11   44.3   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.087   12.5   0.0       0.14   11.8   0.0    1.3  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   1.4e-38   8.2e-35       1     205 [.      94     472 ..      94     474 .. 0.91

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 1.4e-38
                    EEEEES-BSSTTCGGGSSS.TTSEE..ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH........HH CS
                    xxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslt..eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle........gl 85 
                    l+++H+Dv+p++++dgw+t pf+l   e++G+l GrG++d+kg +l++l +l+a+k+ gi+++ + ++ f++ EE g++G   l++        g+
     CDO71506.1  94 LVYGHYDVQPANKSDGWDTePFQLVvdEKTGRLIGRGSTDDKGPILGWLNVLEAHKALGIELPVNMRFCFEGMEENGSEGLDDLIKsevakgkdGW 189
                    689*******88889************************************************************999********6533322222 PP

                    HTTTCESEEEEEEEESSSBTCHSTETEEEE.................................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................. RF
  Peptidase_M20  86 eerekvdavfelhieepgileagklaigvv.................................................................. 115
                    +  ++vd+   + i++  +l++ +  + ++                                                                  
     CDO71506.1 190 F--HGVDC---VCISDNYWLNSRT--PCITyglrglvyfkltvsgpardlhsgvfgrmvhepmtdliqlmsklvasdgtilipgvddmvsvadaee 278
                    2..24444...4477677777444..66668899999*********************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     CDO71506.1 279 raiyekldysvkdveeavgapitlsddkvsvimgrmrmpslslhgiegafygagaktvipasvsgkfsirivppqtpekieplvvqyvqqefaklk 374
                    ************************************************************************************************ PP

                    ...EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES...SSBHTHHHHTTTEEEEE.EESSGGCTTSTTTEEEHHHHHHHHHHHHH CS
                    ...xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 ...kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsg...pggtdarffagiptvmi.fgpgsglaHspnEyvdledlekgikvlar 203
                       k ++e l++g+p+ ++  +  ++a+++a+e++++++++l+  g   p +  ++  +g+  +++ +g+g+++aHs nE++d +++ +g k+l  
     CDO71506.1 375 sknKLKIENLHDGRPWIADyKHWNYEAARRATEAIYKRSPDLTREGgsiPVTLTFAESLGVNVLLLpMGRGDDGAHSTNEKLDRSNFIEGSKLLGT 470
                    **88***************77777**********9998999995555899999999999**544559**999********************9988 PP

                    HH CS
                    xx RF
  Peptidase_M20 204 ll 205
                    +l
     CDO71506.1 471 YL 472
                    87 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.3e-15   1.4e-11       1     106 [.     213     371 ..     213     374 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.3e-15
                 SEB-EEEEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.................................................. CS
   M20_dimer   1 ighkGlaggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia..............................................ee 50 
                 +g++Gl+ +k+t     +++Hsg ++  +  +++ l++l+++l + +g i                                                 
  CDO71506.1 213 YGLRGLVYFKLTvsGPARDLHSGvFGRMVHEPMTDLIQLMSKLVASDGTILipgvddmvsvadaeeraiyekldysvkdveeavgapitlsddkvsvIM 311
                 699*********666779*****88888888******************99*******************************************88888 PP

                 .TCCTCCCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  51 rslprttlnvtgiegGs....aknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                  +++ ++l++ gieg +    ak+vip++++ k++iR++p ++pe+++  +++++++e +
  CDO71506.1 312 GRMRMPSLSLHGIEGAFygagAKTVIPASVSGKFSIRIVPPQTPEKIEPLVVQYVQQEFA 371
                 88888999*******99**************************************99876 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.4e-05      0.14       6      82 ..      84     178 ..      79     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
                    ESTTCE.SEEEEEEEE--B-TTT...............TCC....T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHH CS
  Peptidase_M28   6 legkat.devlllgAHyDsvgvg...............rgp....ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkaf 81 
                    + g+++ ++++l+ +HyD  + +               + +    i  G +D+  ++   L+++++ +a g ++  ++rf f + EE+g  G + +
     CDO71506.1  84 I-GDDPkKKTVLVYGHYDVQPANksdgwdtepfqlvvdE-KtgrlIGRGSTDDKGPILGWLNVLEAHKALGIELPVNMRFCFEGMEENGSEGLDDL 177
                    5.4444478************999999999999999862.24669999*********************999****************98887776 PP

                    H CS
  Peptidase_M28  82 a 82 
                    +
     CDO71506.1 178 I 178
                    6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3528.69
//
Query:       CDO71507.1  [L=545]
Description: hypothetical protein BN946_scf184910.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-66  223.5   0.0    8.4e-66  222.6   0.0    1.4  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   0.0   4.7e-70   8.4e-66       6     456 ..      46     521 ..      40     524 .. 0.85

  Alignments for each domain:
  == domain 1  score: 222.6 bits;  conditional E-value: 4.7e-70
                 EHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEE.ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHH CS
        p450   6 plplvgnllqlgrkeelhevlrklqkkygpifrlk.lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrflt 103
                   +++gnl   +r  e   ++++   k+g++++ + + + p  + +++ a+ +vl +++      +++++ a+     ++ + l+ ng++++++Rr+++
  CDO71507.1  46 SSWFYGNLDDKRR-SEDTLIYDHWIDKFGHVLSYRgFFNMPRLLTTDTRAINHVLTHSA-----LYQKPVAAQ-----RTLSRLLGNGDQHREQRRVMN 133
                 6788888888886.4445557788888999999872456899999999*********93.....445566665.....89999**************** PP

                 HHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTT.SSHHHHHHHHHHHHHHHHHCHHHH..CCCCCH CS
        p450 104 ptltsfgklsleelveeeaedlveklrkkagess...elditellskaaldvigsilFgarfdlle.deklselvkaveelssllskssvq..llllfp 196
                 p++  +++++l+e++ e + +l + +  + +e++   +l++++ lsk++ldvig   F+ +f  l+ + k++ l ka+ee++++ +k  v   l ++fp
  CDO71507.1 134 PAFGPSQIRELTEIFVEKSMELRDVWAAELEEKGeptRLNVVRGLSKMTLDVIGLAGFNYEFHALNpNGKPNALAKAFEEIFTFPDKIPVLliLQNFFP 232
                 ****99888******************9999988888*************************9665355689999*******97655433311446788 PP

                 HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC............SCSSCSHHHHHHHHC...TTCTCT..SSSSHHHHHHHHHHHHHHHHHHH CS
        p450 197 llkylptkllrklkeavkklkdlldklieerretldsa............kksrrdfldalllak...kekkge..sklsdeelaatvlellfaGvdTt 278
                 +l+++ +   r++ +a +++k +   li ++++++ ++            + + rd+l +l++a    +    +  + lsde++ a+v ++l+aG++Tt
  CDO71507.1 233 VLSVIKDARARRIAHAKEAMKRIGSDLIAQKKAEILREssgkknanvgrqSLQGRDLLTLLIKANmatDI---PdsQRLSDEDVLAQVPTFLVAGHETT 328
                 **********************************99999*********996689**********965333...2347********************** PP

                 HHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET......T........EEE-TT-EE CS
        p450 279 sstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir......g........ylipkGtev 363
                 s++++w+Ly L ++P+vq+klreE+ ++  d ++pt+d+l+ lpyld+v++E+LRl  +vp    R+  kd  i+      +         +i k+t +
  CDO71507.1 329 STATTWCLYALTQYPDVQRKLREELLSADTDTDTPTMDELNALPYLDMVVRESLRLFAPVP-ESVRVPVKDDIIPldkpftDrfgqvhdhITIAKDTAI 426
                 *************************************************************.77799999654432222222333344479******** PP

                 EEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEES CS
        p450 364 ivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllpp 456
                 +v++ +++r ++++ ++  eF+peR+++         +    +l F  GpR+CiG r+ ++e+k ++ tl++ Fe+el   + p  i +k g++++p
  CDO71507.1 427 VVPIKTMNRLKSIWgEDSYEFRPERWENPPDsisSIPGVWAHMLTFLGGPRACIGYRFSIVEMKALIFTLVRAFEFEL--AVPPSEIKKKDGIVQRP 521
                 ***************************998877744577889***********************************8..35555555555777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3836.69
//
Query:       CDO71508.1  [L=176]
Description: hypothetical protein BN946_scf184910.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1318.93
//
Query:       CDO71509.1  [L=448]
Description: hypothetical protein BN946_scf184910.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-50  169.7   0.0    8.6e-50  168.9   0.0    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    4.6e-31  106.9   0.0    8.3e-31  106.1   0.0    1.4  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
    4.2e-27   94.6   0.2    7.6e-26   90.6   0.1    2.4  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.091   13.4   0.3        1.7    9.3   0.1    2.7  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.0   1.9e-53   8.6e-50      15     181 ..       7     178 ..       5     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 1.9e-53
                     HHHHHHHCT..SEEEEE-S-HHHHHHHCT..TS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-T....TTTCB-THHHH CS
  UDPG_MGDP_dh_N  15 taavlaeig..hevigvDideekvdklns..gkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskk....kgkaaDlkyve 101
                     t ++   ++  + v++vD +++++d++ns   k+piyepgLee+v++a+  ++l+f+tdv+k ++ead+if++V+TP+kk    +g +aDl+yve
      CDO71509.1   7 TKICCTLKCphIRVTIVDLNQARIDAWNSpdYKLPIYEPGLEEVVRQAR-GRNLFFSTDVDKGIQEADLIFVSVNTPTKKsgvgAGFSADLTYVE 100
                     6667777777689***************833579***************.8*****************************99988999******* PP

                     HHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHH CS
  UDPG_MGDP_dh_N 102 saarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnPEflregsavkdllnpdrvviGveekkae 181
                     sa+r+ia ++++ k+vv+kSTvp +tae +++ ile +sk  g+ fd++snPEfl+eg+a+ dll+pdrv+iG  +++++
      CDO71509.1 101 SATRRIAAVANSSKIVVEKSTVPCRTAE-SMRTILEANSK-PGTRFDILSNPEFLAEGTAISDLLRPDRVLIGSLQTPEG 178
                     ***************************9.88899998776.78******************************9988776 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   1.8e-34   8.3e-31       1      93 [.     204     298 ..     204     299 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 1.8e-34
  UDPG_MGDP_dh   1 etAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgle..aelleavrevNe 93 
                   +++El+KlaaNa+la++Is +N l+++cea+g+++eeV +a+g d+rigpkfl++++G+GGsc++kD+ +Lv+l+e+l+l+  a ++++v+e+Ne
    CDO71509.1 204 WSSELTKLAANAMLAQRISSVNALSAICEATGANIEEVSHAIGYDSRIGPKFLRASVGFGGSCFQKDILNLVYLSESLHLPqvAAYWRQVVEMNE 298
                   589*****************************************************************************9999**********8 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.097   4.3e+02      31      75 ..      38      80 ..       5      86 .. 0.72
   2 !   90.6   0.1   1.7e-29   7.6e-26       9     104 ..     321     428 ..     317     429 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.097
                    SEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S- CS
  UDPG_MGDP_dh_C 31 aevkiyDPkvkeeaveaeleekgvevvdsleealkgadaivilte 75
                    +++ iy+P  +e  ++a    +++ + +++++ +++ad+i + ++
      CDO71509.1 38 YKLPIYEPGLEEVVRQAR--GRNLFFSTDVDKGIQEADLIFVSVN 80
                    455567776666666554..4799999999999999999988776 PP

  == domain 2  score: 90.6 bits;  conditional E-value: 1.7e-29
                     TT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGG...........BTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCC. CS
  UDPG_MGDP_dh_C   9 kdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaele...........ekgvevvdsleealkgadaiviltehdefkeldlaklkelm. 91 
                     +dt+D+ReS+a+ ++++ l+e a v+i+DPkv+e+++ ++l+           +k+v+++ s+ +a+k+ +a+vi+te++efke+++++++++m 
      CDO71509.1 321 ADTGDTRESAAISLVRDFLSERAYVTIFDPKVEEAQIWQDLSeacpsmtleaiKKQVTIAPSALDACKQKEAVVIATEWKEFKEINWETVYAQMt 415
                     69*************************************999***********99**************************************** PP

                     SS-EEEESSS-CC CS
  UDPG_MGDP_dh_C  92 kpavvfDgrnvld 104
                     kpa+vfDgr +ld
      CDO71509.1 416 KPAFVFDGRLILD 428
                     **********998 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.13     6e+02      54      72 ..      64      82 ..      42     118 .. 0.83
   2 ?    9.3   0.1   0.00038       1.7      43      80 ..     374     408 ..     334     420 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
                   CHHHHHHH-SEEEE-S-HH CS
  F420_oxidored 54 dneeaaeeadvvvlavkpe 72
                   d  + ++ead ++++v + 
     CDO71509.1 64 DVDKGIQEADLIFVSVNTP 82
                   556668999****999865 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00038
                    HHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHH CS
  F420_oxidored  43 aeelgvkvtavdneeaaeeadvvvlavkpedveevlse 80 
                    +++  v++ + ++ +a+++ + vv+a  ++ ++e+  e
     CDO71509.1 374 KKQ--VTIAP-SALDACKQKEAVVIATEWKEFKEINWE 408
                    333..66777.99*******************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3375.20
//
Query:       CDO71510.1  [L=668]
Description: hypothetical protein BN946_scf184910.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-08   34.0   0.4    7.9e-08   32.1   0.9    1.5  1  UCH           Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.02   14.6   0.0       0.17   11.6   0.0    2.6  2  CUE           CUE domain
      0.063   12.9   0.1       0.61    9.6   0.1    2.1  2  UCH_1         Ubiquitin carboxyl-terminal hydrolase
       0.17   11.9  10.9       0.42   10.7   1.4    2.8  2  UIM           Ubiquitin interaction motif
        0.5   10.9   3.6        0.4   11.3   0.9    2.1  2  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.9   2.2e-11   7.9e-08     201     257 .]     425     585 ..     393     585 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.2e-11
                 B.................................................................................................. CS
                 x.................................................................................................. RF
         UCH 201 k.................................................................................................. 201
                                                                                                                    
  CDO71510.1 425 Aqrrliqeikelehkkknllyhnekdtladlqsalhyyenvaesdseskraeeirinqeklkhiietvkaevtsidatisrlksdsegmldcpelqehr 523
                 244455555555555555566666666666666666666666666666666666777777777777777777777888888888888888888888899 PP

                 EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT.........CEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxx RF
         UCH 202 YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevls.........sayiLfY 257
                 Y+L av+vH G  ++ H ++y+k  ++gkW+k  D  v+ev ee +vls          +y+L+Y
  CDO71510.1 524 YDLRAVIVHDGLYGRSHLYSYVK--SKGKWWKTVDYVVTEVPEE-TVLSdptglhlgaGPYFLLY 585
                 ***********************..89***************88.89999999999999999999 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.9e-05      0.17      15      41 ..      28      54 ..      27      55 .. 0.90
   2 ?   -1.1   0.0      0.45   1.6e+03      30      40 ..     498     508 ..     498     510 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.9e-05
                S-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE 15 ldeevIravLrasngnvEatinaLLeg 41
                ld+    +vLr +n+n++ +  aLLeg
  CDO71510.1 28 LDPVHALRVLRKHNNNLDKAATALLEG 54
                67777789******************8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.45
                 THHHHHHHHHH CS
         CUE  30 nvEatinaLLe 40 
                 +++ati++L +
  CDO71510.1 498 SIDATISRLKS 508
                 69******966 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.095   3.4e+02      10      31 ..     191     212 ..     186     227 .. 0.86
   2 ?    9.6   0.1   0.00017      0.61     255     299 ..     505     548 ..     394     559 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.095
                 xxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  10 sYlNslLQvlyfipplrnlals 31 
                 sY+  lL +l+f+p +rn++ s
  CDO71510.1 191 SYAALLLHALFFVPQVRNAIAS 212
                 89999************98766 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00017
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 255 eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkva 299
                   k+++e   +  e +   Y+L++v+vh g  + ++hL+s+vk +
  CDO71510.1 505 RLKSDSEGMLDCPELQEHRYDLRAVIVHDGLYG-RSHLYSYVKSK 548
                 3444444444556667889***********555.9********64 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   0.00012      0.42       1      17 []      99     115 ..      99     115 .. 0.89
   2 ?    5.4   2.4    0.0057        20       1      14 [.     143     156 ..     143     156 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
         UIM   1 dEdedLqrAlalSlqEa 17 
                 d+d +L+rAl+ Sl+++
  CDO71510.1  99 DDDGELARALQASLEDQ 115
                 67779**********97 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0057
         UIM   1 dEdedLqrAlalSl 14 
                 ++++ + rA++ Sl
  CDO71510.1 143 QDEQAMSRAIEASL 156
                 69***********8 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.84     3e+03      74      93 ..     416     435 ..     401     441 .. 0.60
   2 ?   11.3   0.9   0.00011       0.4      13      85 ..     451     523 ..     445     530 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.84
  Syntaxin-6_N  74 fkidekelsrrrafveevre 93 
                   +   +++ + +r++++e++e
    CDO71510.1 416 YDFANEKRTAQRRLIQEIKE 435
                   44445555555555555543 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
  Syntaxin-6_N  13 slnkaeslyrrwerlledtss.stseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrr 85 
                   +l  ++s ++ +e++ e+ s+ ++ ee++  +++L+  +++++ ++  ++ t++ ++++ s+  +d  el+++r
    CDO71510.1 451 TLADLQSALHYYENVAESDSEsKRAEEIRINQEKLKHIIETVKAEVTSIDATISRLKSD-SEGMLDCPELQEHR 523
                   566777777888766666666589*****************************999987.77778888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1177  (0.0656478); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 4319.84
//
Query:       CDO71511.1  [L=679]
Description: hypothetical protein BN946_scf184910.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-55  189.1   0.0    5.8e-45  154.0   0.0    2.1  2  Aminotran_1_2  Aminotransferase class I and II
    0.00013   20.9   0.0    0.00023   20.0   0.0    1.3  1  OKR_DC_1       Orn/Lys/Arg decarboxylase, major domain
  ------ inclusion threshold ------
      0.013   14.4   0.0      0.027   13.4   0.0    1.5  2  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   9.7e-49   5.8e-45       4     263 ..     235     483 ..     232     489 .. 0.93
   2 !   33.1   0.0   5.7e-12   3.4e-08     274     362 ..     548     642 ..     538     643 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 9.7e-49
                    EESSSSSTTSTTSS.HHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EE CS
  Aminotran_1_2   4 inLgsneylgdsgk.ptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdei 96 
                    +n +s +ylg ++   ++ +++++ +e  g+++ggt+ + g+ d++ ++e  +a+flg        +e+a++ ++G+  +  ++++l +  +g+ +
     CDO71511.1 235 LNISSYNYLGFAQGsGPCADAVERCIEryGVASGGTRLQGGTLDLHLQAEALVARFLG--------TEDALISSMGFATNSTIIPALVS--KGCLV 320
                    799********9999*******************************************........999*******************9..***** PP

                    EEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.......TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEE CS
  Aminotran_1_2  97 lvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk.......ktkvilvesphNPtGtvatleeleklldlakkynlllf 185
                    +++++++as+  ++rlsg+ v+ ++       h+d++ale++l+e  ++ +       k+ +++ve+ +++ Gt+a+l+ + +l   +kky+++lf
     CDO71511.1 321 ISDELNHASIRFGVRLSGANVRMFK-------HNDMNALEDLLREVISQGQpkthrpwKKILLIVEGLYSMEGTLANLPVIMEL---KKKYKFYLF 406
                    *************************.......***************9999*********************************...********* PP

                    EEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHH CS
  Aminotran_1_2 186 vDeaYagfvfgsldavat.ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaa 263
                    +Dea++++++g+ +   t +++++++  ++++g++ K+fG+aG   Gyi+g++ +++ lr    ++ +  + ++++++++
     CDO71511.1 407 IDEAHSIGALGPRGRGVTdYFGIDRRQVDILMGTFTKSFGAAG---GYIAGSKTIIDRLRLQGHSGVYtEAMTPPVLTQV 483
                    ***********77433336************************...**************77666666266666666554 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 5.7e-12
                    HHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEEEEETHHCHHHHHHHHHHT.CTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsaetakelskkLlee.vgvyvtpgtsftv...pgrlRitv.Aglteeeleelvea 362
                       + +rl+ ++++l  +L++lg++ ++++ s +++l ++ + ++  +s++++++   ++v+ + ++ +   ++r+R+++ A++t+e+++e+++a
     CDO71511.1 548 GRMRLRRLAFNARYLNRGLRKLGFITYGNDdSPVVPLLLFHPGKMAVFSRMMRTRaTPIVVVVVAYPATplvTSRVRFCLsAAHTKEDVDEVLRA 642
                    566789***********************99************************88899999999999999*******************9975 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.9e-08   0.00023      68     207 ..     280     412 ..     276     415 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTT CS
    OKR_DC_1  68 ikeaqkyaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkefeeetlkekikevpda 166
                 + +a+ ++ar  g++ + ++  G + +n +++ a++++g lv+ d  +H Si  ++ lsga+   ++   n +  +  + ++ + ++    + k + + 
  CDO71511.1 280 HLQAEALVARFLGTEDALISSMGFA-TNSTIIPALVSKGCLVISDELNHASIRFGVRLSGANVRMFK--HNDMNALEDLLREVISQG----QPKTHRPW 371
                 679********************86.589999*****************************865444..455666665555222222....22333333 PP

                 GSESEEEEESS-T..TSEEE-HHHHHHHHTTSESEEEEE-TT- CS
    OKR_DC_1 167 kaprlavitnsTY..dGvlynakeivdkleklsdrilfDeAwv 207
                    + ++i  + Y   G+l+n+  i+++ +k++ ++++DeA+ 
  CDO71511.1 372 --KKILLIVEGLYsmEGTLANLPVIMELKKKYKFYLFIDEAHS 412
                 ..44577777777447*************************95 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.6e-06     0.027      32     182 ..     267     415 ..     252     463 .. 0.78
   2 ?   -3.8   0.0      0.76   4.6e+03     353     370 ..     621     638 ..     617     639 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-06
                  SSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHH.HHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE CS
  Aminotran_5  32 rsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainl.valslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld 128
                  ++  +l+  + +   +a++ va+++++e+      +s+ + a n  ++ +l   +++g  ++  e++h + +   ++l+   ga+v++++ ++   l+
   CDO71511.1 267 SGGTRLQGGTLDLHLQAEALVARFLGTED----ALISSMGFATNStIIPAL---VSKGCLVISDELNHASIR-FGVRLS---GANVRMFKHNDMNALE 353
                  55666666777788899***********8....445666665554044445...666666666677777777.666665...**********999999 PP

                  GGGHHHH-...-TTEE......EEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 129 ldelekll...nektk......lvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavgh 182
                   d l++ +   ++kt       l+++    ++ Gt+  ++ i +l kk++ ++++D a ++g 
   CDO71511.1 354 -DLLREVIsqgQPKTHrpwkkiLLIVEGLYSMEGTLANLPVIMELKKKYKFYLFIDEAHSIGA 415
                  .6666666555444433333337788899******************************9986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.76
                  -EEEEE--TTS-HHHHHH CS
  Aminotran_5 353 gtvRaSlyiynteeevdr 370
                  + vR+ l  + t+e+vd 
   CDO71511.1 621 SRVRFCLSAAHTKEDVDE 638
                  6799************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4789.66
//
Query:       CDO71512.1  [L=671]
Description: hypothetical protein BN946_scf184910.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-47  160.1   0.0    1.1e-46  159.4   0.0    1.3  1  Dus        Dihydrouridine synthase (Dus)
    1.2e-06   28.3   4.0     0.0028   17.5   0.5    2.5  2  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    0.00012   21.8   9.0       0.03   14.1   2.3    2.4  2  zf-CCCH_4  CCCH-type zinc finger
     0.0023   18.6   2.2       0.16   12.7   0.6    2.4  2  Torus      Torus domain
  ------ inclusion threshold ------
       0.44   10.7   8.7        1.6    8.9   1.4    2.5  2  zf_CCCH_4  Zinc finger domain


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0     3e-50   1.1e-46       2     269 ..     311     587 ..     310     597 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 3e-50
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHH...TT-SCEEEEESSTTEEETTE CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvad...lgadeIdlNvGCPskkvtrg 97 
                 laP+  v +lpfR+l+  +ga+ +++ em  a  +++ +k++++ +   ++e    +Q++gs+p+ll+ aA++       + d +d+N+GCP++ v + 
  CDO71512.1 311 LAPLTTVGNLPFRRLCVDYGAD-ITCGEMGLAMSFLQGSKEEWSLVRRHPSEGIFGMQIAGSKPQLLVPAAEIIGRecaGNLDFVDVNCGCPIDLVYKT 408
                 8*********************.*************************************************975424467899*************** PP

                 EEGGGGGGSHHHHHHHHHHHHCCSS.S-EEEEEESESSTTTC.HHHHHHHHHHC.T-SEEEEESSECCC.TT-CG--CHHHHHHHHH-S.......... CS
         Dus  98 gaGaaLlrkpdlvaqivkavvkave.iPvtvkirigiddeeenalelakiveaa.GaqaltvHgRtraq.nyegtadweaIkevkqavs.......... 183
                 g+G+aLl  +  + +i+  + +a++ iPvtvk r+g++d  ++a +l+ ++ a+ Ga a+tv  Rtr   +y++ adw+ Ik+  qav+          
  CDO71512.1 409 GSGSALLDAAGRLGKILVGMNRALGdIPVTVKLRTGVKDGRNTAHKLMPRLAAEwGASAITV--RTRHSiRYTKLADWDYIKQCVQAVRereaeedlpp 505
                 ************************99********************997765544*******..6665526778********99888766666667779 PP

                 S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHH CS
         Dus 184 ipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkirk 269
                 +p+++ Gd+++aed    +++ G+dgvmigrgal +Pw+f    ++k+ + e + + +e++e++++ +++ ++++g d++  + ++
  CDO71512.1 506 VPIFGGGDCFSAEDYWYKMDNYGVDGVMIGRGALIKPWIFT---EIKE-RREWDISSRERLELIRKYAEYGLNHFGSDTAGVNTTR 587
                 ****************************************8...5555.4444455677888888888888888888776555544 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   5.1e-05      0.18       3      26 ..      91     114 ..      89     115 .. 0.87
   2 !   17.5   0.5   7.8e-07    0.0028       3      23 ..     162     182 ..     160     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
                 CHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkFaHg 26 
                 +elC + + + +C +G+ C+F H+
  CDO71512.1  91 VELCFRVASGKSCEFGNDCRFTHD 114
                 67888889989**********997 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 7.8e-07
                 CHCBCHHHHHS--TTGGG-SS CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkF 23 
                 t  C+ f+ tG+C++G +C+F
  CDO71512.1 162 TTTCPIFHDTGECRHGLKCRF 182
                 667999*************** PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.3   8.5e-06      0.03       6      22 .]      97     114 ..      93     114 .. 0.88
   2 !   11.4   0.6   6.1e-05      0.22       2      20 ..     164     183 ..     163     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.5e-06
   zf-CCCH_4   6 fakG.sCrfGdnCrFsHd 22 
                 +a G sC fG+ CrF Hd
  CDO71512.1  97 VASGkSCEFGNDCRFTHD 114
                 56799************9 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.1e-05
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFs 20 
                 +Cp f  +G Cr G +CrF+
  CDO71512.1 164 TCPIFHdTGECRHGLKCRFL 183
                 69999999***********7 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.6   4.4e-05      0.16      46      94 ..      63     116 ..      49     127 .. 0.69
   2 ?    4.7   0.0     0.013        47      69      91 ..     162     184 ..     145     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.4e-05
                 ----S----HHHH----HHHHSTT-....-B-HHHHHT.--SSGGG-SSB-S-- CS
       Torus  46 kekaktrcnikkdsGytkadkekes....yfClfFarG.lCakGkkCeylHrlP 94 
                 ++k   + + kk+ G  k+++ ++      +C+  a G  C  G++C+++H++ 
  CDO71512.1  63 QRKKLAKEERKKHRGANKGRRFQKVrdevELCFRVASGkSCEFGNDCRFTHDVA 116
                 334444556677777777774433333459********5599*********985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.013
                 T--B-HHHHHT--SSGGG-SSB- CS
       Torus  69 esyfClfFarGlCakGkkCeylH 91 
                 ++++ +f+  G C +G kC++l 
  CDO71512.1 162 TTTCPIFHDTGECRHGLKCRFLG 184
                 4455678889**********984 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.4   0.00044       1.6       8      19 .]     102     113 ..      99     113 .. 0.93
   2 ?    5.6   1.0    0.0047        17       4      18 ..     168     183 ..     165     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00044
   zf_CCCH_4   8 tCkkGdkCrFaH 19 
                 +C +G+ CrF H
  CDO71512.1 102 SCEFGNDCRFTH 113
                 7*********99 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0047
   zf_CCCH_4   4 flq.GtCkkGdkCrFa 18 
                 f+  G C++G kCrF+
  CDO71512.1 168 FHDtGECRHGLKCRFL 183
                 566699*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4640.40
//
Query:       CDO71513.1  [L=514]
Description: hypothetical protein BN946_scf184910.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-66  223.7   0.0    1.1e-65  222.3   0.0    1.6  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3   0.0   5.9e-70   1.1e-65      81     457 ..      86     492 ..      62     496 .. 0.87

  Alignments for each domain:
  == domain 1  score: 222.3 bits;  conditional E-value: 5.9e-70
                 TTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTT.SSHHHHHHH CS
        p450  81 pfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess...elditellskaaldvigsilFgarfdlle.deklselvk 175
                     kgvlf++ge+++k++  + p+ +      l++++ e +++l   ++ +  +++   ++d+ + lsk++ldvig   F+ rfd+l+ + +++el +
  CDO71513.1  86 IATLKGVLFTEGEQHRKQNPAFGPAQLRE----LTPIFVEKSAELRGLWEAELAQAGgqgRIDVLKGLSKMTLDVIGLAGFNYRFDSLNpNGQPNELNQ 180
                 5566899*****99999998888887766....9*****************999999999**************************987355799**** PP

                 HHHHHHH...HHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC............SCSSCSHHHHHHHHC...TTCTCT CS
        p450 176 aveelss...llskssvqllllfp.llkylptkllrklkeavkklkdlldklieerretldsa............kksrrdfldalllak...kekkge 255
                 a++e++s    + +  + l ++fp l + +p++  r++++a++++  +  +l+ee+++ + ++            + + rd+l +ll+a    +    +
  CDO71513.1 181 AFQEIFSpsgGF-TVLMILQNIFPvLKSLIPDERSRRIDRAQEVMRRIGIQLMEEKKAAIMREiseskdaslgrkDLHGRDLLTLLLKANmatDI---P 275
                 *******64322.22334557899888899******************************9999*********996689**********965333...2 PP

                 ..SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.... CS
        p450 256 ..sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.... 348
                   + lsdee+ a+v ++l+aG++Tts++++w+L+ La+  evq+klr E+ +      +pt+d+l++lpyldav++EtLR+h +vp ++ R++ k    
  CDO71513.1 276 dsQRLSDEEVLAQVPTFLVAGHETTSTATTWCLFALAQAHEVQRKLRDELFTLD--TASPTMDQLNSLPYLDAVVRETLRIHAPVP-TTVRVANKddvi 371
                 347**********************************************76654..448***************************.677*****4444 PP

                 .........CEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHE CS
        p450 349 .........dvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnF 433
                          d ++++   i kGt +++++ a++rd++++ ++++eF+peR+++      n  +     l F  GpR+CiG r+  +e+k ++ tl++ F
  CDO71513.1 372 pvaepfvdrDGKVQNgIRIAKGTPIFIPILAINRDKKLWgEDAHEFRPERWDNPPDavsNIPGVWGHILSFLGGPRACIGYRFSLVEMKALIFTLVRAF 470
                 4444444444445557************************************9988888777888999******************************* PP

                 EEEESTSTSGGEEESSCSSEEESS CS
        p450 434 evelqpetdpppileksglllppk 457
                 e++l   ++p++i++k++++++p 
  CDO71513.1 471 EFDL--AVAPEDIQKKTSIVQRPL 492
                 ***8..69*******999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3447.10
//
Query:       CDO71514.1  [L=421]
Description: hypothetical protein BN946_scf184910.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-47  160.1   5.3    1.8e-46  159.0   5.3    1.5  1  Asp              Eukaryotic aspartyl protease
    1.9e-06   28.3   7.2     0.0054   17.0   0.3    3.4  4  TAXi_N           Xylanase inhibitor N-terminal
     0.0029   18.2   5.6       0.31   11.7   2.4    2.8  2  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.021   15.3   0.1      0.042   14.4   0.1    1.4  1  Ribosomal_L35p   Ribosomal protein L35
        0.1   13.2   2.8        5.6    7.6   0.3    2.6  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   5.3     5e-50   1.8e-46       2     314 ..      93     412 ..      92     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 5e-50
                 EEEEEEETTTTEEE.EEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEET.TEEEEEEEEEEEEEESS CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkf.tvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvg.gltvknqefgeatkepg 98 
                 Y+ ++++Gtp  +  ++++DTGSs++WV + k +             ++Sst   +  ++s++YG+gs sG+ ++dtv++g glt+++q +g a++ +g
  CDO71514.1  93 YVVNVGVGTPATTSdSLLVDTGSSNTWVGAGKAY-----------VRTSSSTQ--TRDRVSVTYGSGSFSGTEFTDTVSLGdGLTITGQSIGVASRSQG 178
                 99********9765379***********988775...........55666665..77899********************856***************9 PP

                 HHHTTSSSSEEEE-S-GGGSCGG........SCCHHHHHHHTTSSSSSEEEEEE-S...TTSSEEEEEESSEEGGGEEEEEEEEEESS....TSSTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx RF
         Asp  99 stflaakfdGiLGlgfkeisvee........atpvfdnlvsqglikepvfsvylnr...eeeeggeivfGgvDeskykGsltyvpvts....kgywqie 182
                        +dGiLG+g ++++v+         + +v dnl++qg i +++ +v ++    +e + ge++fGg+D+sk++Gs+t  p+t+    ++++ i+
  CDO71514.1 179 F----DGVDGILGIGPTDLTVGTlspdtrtsIPTVTDNLFAQGTIPSDLVAVSFEPtnsPEVTNGELTFGGTDSSKFTGSITFAPLTRtspaSEFFGIN 273
                 3....448*******99999999888887744555999*************998544449999************************988866666665 PP

                 EEEEEETTEEEEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGE....EEESSSTTSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
         Asp 183 lesvtvggktvlcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselv....lkeeeseesqCi 277
                  +s+ +g++t+   s+++ i+DtGT+l+ + t++++++++a+ga  ++ +g   +  +++++l+++ fti+ga++++++++ +    l+   ++++  i
  CDO71514.1 274 -QSIRYGTSTS-ILSNTAGIVDTGTTLTLIATDALQRYQRATGAVLDNATGLLRLTQAQFQNLQSLFFTINGATFELTPNAQIwpraLNTAIGGNANSI 370
                 .89***99999.788999*******************************9*****************************99983333333334444444 PP

                 ESE.....EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 278 lgl.....vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                   +     +++ eg   i G +Fl+++y vfd +n+rvg+A+
  CDO71514.1 371 YLIvgdigTPSGEGLDFINGLTFLERFYAVFDSTNKRVGFAT 412
                 4446999889999999************************97 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.3   1.5e-06    0.0054       1      29 [.      93     122 ..      93     136 .. 0.81
   2 !   12.8   1.5     3e-05      0.11      72     144 ..     130     194 ..     122     245 .. 0.82
   3 ?   -1.5   0.0      0.69   2.5e+03      87     122 ..     210     247 ..     199     257 .. 0.63
   4 ?   -0.6   0.0      0.37   1.3e+03      13      34 ..     287     308 ..     275     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
      TAXi_N   1 YlvsisiGtppqpl.klvvDtGsdltWvqC 29 
                 Y+v++++Gtp+++  +l+vDtGs+ tWv  
  CDO71514.1  93 YVVNVGVGTPATTSdSLLVDTGSSNTWVGA 122
                 9*********776526***********976 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3e-05
      TAXi_N  72 sgsssstceyeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgklS 144
                 s+s +++ +++++yg  ++s sG+  tdt++l    g++ +++   +G ++  ++g+ +g+dGilG G ++l 
  CDO71514.1 130 SSSTQTRDRVSVTYG--SGSFSGTEFTDTVSL----GDGLTITGQSIGVAS-RSQGF-DGVDGILGIGPTDLT 194
                 444555566777775..5599***********....899**********98.45555.58********98865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.69
      TAXi_N  87 adgssssGvlatdtltlsst..dgksvkvpnlvfGCgk 122
                 +d+ +++G++ +d +++s    ++++v+  +l+fG ++
  CDO71514.1 210 TDNLFAQGTIPSDLVAVSFEptNSPEVTNGELTFGGTD 247
                 57777888888886666544114455555578887665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.37
      TAXi_N  13 plklvvDtGsdltWvqCkpcka 34 
                 ++  +vDtG  lt +  ++ ++
  CDO71514.1 287 NTAGIVDTGTTLTLIATDALQR 308
                 5667999999999988877665 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   2.4   8.6e-05      0.31      11      88 ..     108     188 ..      94     189 .. 0.69
   2 !    6.5   0.1    0.0036        13      13      35 ..     291     313 ..     286     361 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
  Asp_protease_2  11 rfllDTGasttlispelaeklglkvreseltvrvsgagge.vkarlvrldslklgg.ltlknvpalvldlg...eeidglLGm 88 
                     ++l+DTG+s+t +    a     + +++  + rvs+  g+ +++ +   d+++lg+ lt++++ + v+ +    +++dg+LG+
      CDO71514.1 108 SLLVDTGSSNTWVGAGKAYVRTSSSTQT--RDRVSVTYGSgSFSGTEFTDTVSLGDgLTITGQSIGVASRSqgfDGVDGILGI 188
                     78********999855553333333333..23444444443666666789****998************55223578999996 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0036
  Asp_protease_2  13 llDTGasttlispelaeklglkv 35 
                     ++DTG + tli +++ ++ +  +
      CDO71514.1 291 IVDTGTTLTLIATDALQRYQRAT 313
                     8*************999986655 PP

>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.2e-05     0.042       9      38 ..      40      70 ..      39      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
  Ribosomal_L35p  9 akKRfkvtgsGk.ikrkkagkrHlltkKstk 38
                    ++KRf++tgsG  + r +a+ r+l  + s+k
      CDO71514.1 40 TAKRFNLTGSGTlLARDQARVRKLRARASAK 70
                    69*********99**********99888887 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0016       5.6      12      86 ..     109     187 ..     103     189 .. 0.66
   2 ?    5.2   0.1    0.0088        31      13      33 ..     291     311 ..     286     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
                      EEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.E.ETTEEEEEEEEEESS....SSEEEE CS
  gag-asp_proteas  12 flvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkigg.ielrnvsavvlegel....ddlLLG 86 
                      +lvDTG s+t + +  a     s+ +++ +v+v+ ++g+ ++++ + d+v++g+ ++++  s+ v++ ++     d++LG
       CDO71514.1 109 LLVDTGSSNTWVGAGKAYVRTSSSTQTRDRVSVTYGSGSFSGTEFT-DTVSLGDgLTITGQSIGVASRSQgfdgVDGILG 187
                      69***********999998777777766667776666666666543.577776535666666655554422334555666 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0088
                      EEETT-SS-EEEHHHHHHTTG CS
  gag-asp_proteas  13 lvDTGAsstiiseelaerlgl 33 
                      +vDTG + t+i ++  +r + 
       CDO71514.1 291 IVDTGTTLTLIATDALQRYQR 311
                      8************99998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2859.24
//
Query:       CDO71515.1  [L=1161]
Description: hypothetical protein BN946_scf184910.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-26   90.2   0.0    7.3e-13   48.7   0.0    3.1  3  C2              C2 domain
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.14   11.5   0.0    2.0  2  Plasmodium_Vir  Plasmodium vivax Vir protein


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   8.1e-17   7.3e-13       2      92 ..     448     565 ..     447     578 .. 0.84
   2 !   37.8   0.0   2.1e-13   1.8e-09       2      98 ..     653     776 ..     652     781 .. 0.72
   3 ?   -1.3   0.0      0.31   2.8e+03      70      88 ..     942     959 ..     939     967 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 8.1e-17
                 EEEEEEEEEESSSSSSTTSS......................CEEEEEEEE..ECEEEEEE-SCSSSSSSEEEEEEEEEESC...HTTSEEEEEEEEEC CS
          C2   2 klevtvieAknLpnkdkkgs......................sdpyvkvsl..dgkqkakTrviknslnPvWnekftfevae...leeakLeveVfdnd 73 
                  l +++++A++++++d +gs                       dpyv++++   +k  + Tr+ik  +nPv++e+ ++ v+    + ++kL ++++d+d
  CDO71515.1 448 VLVIHIHRATGIKKMDTTGSsgaysfpqchrptisdiaatssADPYVTLTFsrLEKPLYSTRIIKGDCNPVFEETAVLIVDIntvKLREKLSFQLWDSD 546
                 699************996666667777777777777777777*********9989999*****************999666667*9************* PP

                 SSSTEEEEEEEEEEGHHHH CS
          C2  74 rlskddfiGkveiplstll 92 
                 r+s dd++G +e+++ +l 
  CDO71515.1 547 RMSIDDMMGFAEVDIVELI 565
                 *************988833 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 2.1e-13
                 EEEEEEEEEESSSSS..................ST........TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEE...EEEEEEESCHTTSEEEEEEEE CS
          C2   2 klevtvieAknLpnk..................dk........kgssdpyvkvsldgkqkakTrviknslnPvWn...ekftfevaeleeakLeveVfd 71 
                  l+v+v+e ++L  k                  d         +g +++y+++sl+++ +++Trv++ + +P +n   e+f+ ++    +a+++v+V+d
  CDO71515.1 653 LLSVQVHEIRDLSVKtmgkerrggkgregekgqDDgeetaeesEGLPSSYCTISLNDELVYETRVKPITSSPMFNagtERFVRDW---RKAHVTVTVKD 748
                 699*********7664455555544444433330044444444556*******************988889***95445555555...55********* PP

                 ECSSSTEEEEEEEEEEGHH.HHTTHHHH CS
          C2  72 ndrlskddfiGkveiplst.llsgeeae 98 
                 +++ ++d ++G+v ++ls+ + + ++ +
  CDO71515.1 749 SRMRENDVILGTVFLKLSDvFVNASQVT 776
                 **978888**********9644545544 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.31
                 EEECSSSTEEEEEEEEEEG CS
          C2  70 fdndrlskddfiGkveipl 88 
                 +d+d+ +k + iG+v ++l
  CDO71515.1 942 WDSDK-EKAERIGTVALDL 959
                 899**.*********9986 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.14     215     328 ..      31     139 ..       7     148 .. 0.66
   2 ?   -4.7   4.3       1.3   1.2e+04     211     297 ..    1007    1092 ..     989    1101 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
  Plasmodium_Vir 215 eeklkqekaaeapellnkekaeqgksekslgseslssekpearkgve...........eqlvhaltsassgtgndaspesiansssslesvseel 298
                     ++  k+e+ + ++   +++++e++ +   +g                           e +  ++++ s+  ++  +   ++++++ ++ + +++
      CDO71515.1  31 ATAAKAEQLQDQSARREEKQTEKTARRLAKG---------------HamhvtdpttgeELEIRNADEDSGAGSKGHNVLHQDFPPPNWKQHRDHV 110
                     2222222222223333333333333333333...............033334444445677888888888889999999999999*********9 PP

  Plasmodium_Vir 299 ssnfirniimaaailgtgiflfsyllykfT 328
                      s + ++i+ + ++ ++g fl+s ll++ T
      CDO71515.1 111 LSITNTSIV-YSSAAFVGSFLLSTLLSSLT 139
                     9*******9.8888899**********976 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 1.3
  Plasmodium_Vir  211 pkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgveeqlvhaltsassgtgndaspesiansssslesvsee 297 
                      p++++++ +qe+ a+  +   + +++++++   +  ++ + e++++  ++++++ ++++ a+ +  + a+ es+++  +s +++ +e
      CDO71515.1 1007 PQDHRASESQETQARDGQGRAPVQTDETMTGGPVNTQEGDDEDARQ-DEEAHGTNTTVSAADVEVASGADNESDGDEGNSRDTNRPE 1092
                      5566666666666666666667777777777777666655444433.2333555555555555555666666666555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 7143.55
//
Query:       CDO71516.1  [L=546]
Description: hypothetical protein BN946_scf184910.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-75  253.8   3.1    2.7e-53  181.5   0.3    3.6  3  RNA_pol_Rpc34  RNA polymerase Rpc34 subunit


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc34  RNA polymerase Rpc34 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   8.3e-14   1.5e-09       6     103 ..       4     100 ..       1     112 [. 0.88
   2 !  181.5   0.3   1.5e-57   2.7e-53     101     267 ..     116     272 ..     104     406 .. 0.86
   3 !   33.5   0.2   1.6e-12   2.8e-08     289     335 ..     460     538 ..     388     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 8.3e-14
                    .-HHHHHHHHHHHHHCSSSSSHCCHHHHHHHSTTSHHHHHHHHHHHHHHCTSEECCC.STTSCECEE--CCC..HHHHHTSXHHHHHHHHHHHHHX CS
  RNA_pol_Rpc34   6 aklqelkkrlleelrkaseqklfsqqdLqddipslslklllsavqeLldkkllvllknsndeLvyravsree..AkkktslsedeslVysiIeesG 99 
                    +kl+ l+++l++++  +  +k ++q++ +++ip   +  +  a++ Ll ++ll+ lk++++  ++rav ++e   + k+ +s +e++++s+I+++G
     CDO71516.1   4 RKLNPLEQKLHQAALAD-PKKTLTQKECEALIPDPAA--RTGALNFLLGTGLLKALKDTKGAVSFRAVMKKEldVRSKKDMSGEEAMILSYIQAAG 96 
                    57999*********999.9************887665..5689**************99999****9987752278999***************** PP

                    SSXE CS
  RNA_pol_Rpc34 100 neGI 103
                    neG 
     CDO71516.1  97 NEGM 100
                    ***7 PP

  == domain 2  score: 181.5 bits;  conditional E-value: 1.5e-57
                    SXEEHHHHHHTTGXXHHHHHHHHHHHHHTTXXEEEEXSSSSSXEEEESSSTXXXXXXXXXXXXXSTTSSSSTHHHHHHHHHHHHHCHCSXSTT... CS
  RNA_pol_Rpc34 101 eGIwsrtiksklnLhksvvkkcLksLeskkyiksvksvkaptkkiYllanLePseevTGGpwftdgelDveFieeleeiifklvkqkssvsleqit 196
                     GIw++ +k+k+ Lh++v+++cLksL +k++ik+vksvk+pt+kiY+la+LePs e+TGGpw+td+elD+eFi  l+  ++++++ +s++++++++
     CDO71516.1 116 AGIWTKHLKAKTELHQTVIDRCLKSLTQKQLIKAVKSVKFPTRKIYMLAHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRSAPKRKGSD 211
                    6******************************************************************************************88433 PP

                    .......SSS.SSHHHHHHHSSSSTXXBXSCHHHHHHHCSTTTSSSXSHCCHHHHHHHHCHSSSCEEETTT CS
  RNA_pol_Rpc34 197 qkkeksgkkaekekkkalplaagyksyptveeiakfineagitkvrLseediqqlvevLvyDgklekvkvs 267
                    +          ++ ++ l   +   sypt+++i+ f+++++it+++L +e ++ l++vLv+Dg +e+v   
     CDO71516.1 212 D----------SSSSTLLYPISAAPSYPTAQQILGFLSKSRITETELNVEHVEMLLNVLVLDGEIERVPAF 272
                    3..........23344455556778*****************************************99655 PP

  == domain 3  score: 33.5 bits;  conditional E-value: 1.6e-12
                    S.................................XXXXXXXSSSSSTTXXSSXSSSSSXXTSSSSSSSSSSTTSSSSXX CS
  RNA_pol_Rpc34 289 k................................eakvvqpealasglveapcgecpvfdlceeggavspkncvYlkeWl 335
                    k                                ++++v +e +a gl ++pc +cp fd c+ gg+v+p++c Y   Wl
     CDO71516.1 460 KskskskrsrssspvahdfaaahedygagggayVYRAVRQEHAAGGLSQSPCVRCPTFDFCKPGGPVNPQECTYYGGWL 538
                    0222223445677788899999999999999999****************************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2092  (0.116682); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                       339  (0.0189079); expected 17.9 (0.001)
Passed Fwd filter:                       146  (0.00814323); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.08u 0.42s 00:00:02.50 Elapsed: 00:00:00.59
# Mc/sec: 2774.91
//
Query:       CDO71517.1  [L=248]
Description: hypothetical protein BN946_scf184910.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-18   67.1   0.1    5.4e-18   65.9   0.0    1.6  2  EST1             Telomerase activating protein Est1
  ------ inclusion threshold ------
       0.25   10.3   7.9       0.36    9.7   7.9    1.1  1  Activator_LAG-3  Transcriptional activator LAG-3


Domain annotation for each model (and alignments):
>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.94   8.5e+03      19      50 ..      15      23 ..       6      47 .. 0.50
   2 !   65.9   0.0     6e-22   5.4e-18       2     128 ..      59     223 ..      58     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.94
                HHHHHHHH-------H.HHHHHHHHHHHHHHH CS
        EST1 19 kkqlknldsapkkkkkpvekrklklklvkflk 50
                +++lk+                        lk
  CDO71517.1 15 QQALKES-----------------------LK 23
                2222222.......................22 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 6e-22
                 HHHHHHHHTHHHHHHHHHHHHHHHH...........----..................---H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-.H CS
        EST1   2 veellWrkvyyevikllkkqlknld...........sapk..................kkkkpvekrklklklvkflksaigfYqsliqrllsefel.e 70 
                 +e++lW +++y +i+ +k++++ ld           +  +                   ++  ve rkl +++++fl ++++f+ +li+r+ + f+l +
  CDO71517.1  59 AETMLWIQTSYAFISVYKQRIATLDrlvygnsrqqqQ--QqpqegqpagqgqqqprqnGGHGVVEYRKLLQRFRQFLADEEKFWIQLILRIRRLFQLdD 155
                 89***********************999998876541..156678888999999999999999*********************************987 PP

                 TT...........................-.....-----.----TTB--TTSHHH.HHHHHHHHHHHHHHHHH CS
        EST1  71 lssvlkvilk...............sktklpekessekse.teseeeksslssseqksavlklvhrcLiyLGDl 128
                 ++++l+++++               +      + ++   +  +++++  ++s +++ +  l ++ ++L++LGD+
  CDO71517.1 156 VQPILAQLEIlpvddapsedgppkrN----HFQFPP-DADlAAASPSLTPTSREQR-ESRLAILSKALVCLGDI 223
                 88999999999999999999966442....233333.2344777788888888888.9***************8 PP

>> Activator_LAG-3  Transcriptional activator LAG-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.9     4e-05      0.36     390     435 ..      73     118 ..      63     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4e-05
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Activator_LAG-3 390 tqaqqqavylqrmqrmeqirqqqqqaqqhqqaqqqhqqqaqngvmg 435
                      +  +q+ + l+r+   +  +qqqqq q+ q a q  qq+ qng  g
       CDO71517.1  73 SVYKQRIATLDRLVYGNSRQQQQQQPQEGQPAGQGQQQPRQNGGHG 118
                      55577778888888889999************99999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1709.36
//
Query:       CDO71518.1  [L=830]
Description: hypothetical protein BN946_scf184910.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-29  101.7   0.0    1.4e-23   83.8   0.0    2.1  2  EST1_DNA_bind  Est1 DNA/RNA binding domain


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   7.8e-28   1.4e-23       1     229 [.       7     258 ..       7     266 .. 0.81
   2 !   15.8   0.0   4.1e-07    0.0074     236     280 ..     297     342 ..     287     343 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 7.8e-28
                    HHHHHHHHHHH-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--TTHHHHHHHHHT-TT-HHHHHHHHHHHHH.TT......---HHHHHH CS
  EST1_DNA_bind   1 AlrYYllAaellPsnGepyNQlgviaiysedkldavYyylRSllssnpfptAkeNLellfekirkklekgenkqskes.kq......ektpeellk 89 
                    A ++Y++A  llP  G+p +Ql++ia y++d + +  +y+R+l++++p++tA +NL + + k++++++++  k++ke  k+      +  p   ++
     CDO71518.1   7 AQQCYQQARLLLPQDGNPAHQLAIIASYQKDTFSSLVHYYRALCVRSPYDTAADNLGTVLAKALESWTSRGAKKEKEReKEqargetSLAPRLRIE 102
                    789***********************************************************************9998766898887567777777 PP

                    HHHHTTHHHHHHHH.STTTT.....TSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S--SXXXXXXXXXXXXXHHHHHHHHH CS
  EST1_DNA_bind  90 rliilFlrlhgklf.tgtsfk...delerevlkklqillseslkernlkdaslllkmllinifaienlkdkssgeeskektllllrlalrfifelf 181
                     +  +++ lh+    ++++++   ++l  +v ++++ l s++ +      ++++ ++++++ +a+   +   ++++   + ++ + +a+++  ++ 
     CDO71518.1 103 AFKERLIVLHALWSiPPEEAHtiaPNLAQKVAEDFKSLVSDRVLP-----SDIISNVVVLAQGALWKHRMFRNPSSNGHRRNMHAGAATAIESAIA 193
                    777778888887651555664456888888888888888888885.....57899*********99888888888877676665666666666688 PP

                    HHHHH..............HTGGGTTT...............-SS-THHHHHHHHHHHHHTT-HHHHHHHHT CS
  EST1_DNA_bind 182 gllle..............kvetlealk..........rdketpsatrvLpalrvylswlksnkslledvek 229
                    g+ll+              +                   ++ t +++r Lpalr+ + wl +n ++l+ +++
     CDO71518.1 194 GHLLAvhrvllevgivqiaE-------AptedtaehdlAQRITAEFRRTLPALRTGSKWLRANLRYLSQAWQ 258
                    88888666655565553331.......0344466688889***********************999976664 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.1e-07
                    HHHHHHHHHHH-.---------------SS--HHHHHTTTBGGGTT CS
  EST1_DNA_bind 236 slsdllnellss.ellnksfdvekdpkrdylleEDielkgFsplke 280
                     l +++  ++ + + l+  f+++  pk + +leED+e+ gF+plk+
     CDO71518.1 297 GLREFWRTYAHFsTVLRRAFPQDRLPKTTTTLEEDVEMAGFQPLKR 342
                    67789999999999******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5595.70
//
Query:       CDO71519.1  [L=704]
Description: hypothetical protein BN946_scf184910.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-70  236.5   0.1    1.6e-69  234.3   0.0    1.9  3  SNF2_N      SNF2 family N-terminal domain
    8.7e-21   74.3   0.1    2.5e-20   72.9   0.0    1.9  2  Helicase_C  Helicase conserved C-terminal domain
    2.3e-06   27.7   0.0    9.8e-06   25.7   0.0    2.1  2  ResIII      Type III restriction enzyme, res subunit
     0.0012   18.7   0.0      0.059   13.1   0.0    2.4  2  DEAD        DEAD/DEAH box helicase
     0.0088   16.9   0.1       0.02   15.7   0.1    1.6  1  Chorion_2   Chorion family 2
  ------ inclusion threshold ------
       0.16   12.7   5.1      0.081   13.7   1.4    2.3  2  DTHCT       DTHCT (NUC029) region


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.17     5e+02       1      15 [.      98     112 ..      98     115 .. 0.88
   2 !  234.3   0.0   5.5e-73   1.6e-69      54     349 ..     113     437 ..     107     438 .. 0.88
   3 ?   -2.4   0.0      0.51   1.5e+03     117     172 ..     561     617 ..     557     660 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.17
                 HHHHHHHHH...... CS
                 xxxxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkReqn 15 
                 +Q ++ kwm +Re  
  CDO71519.1  98 HQVKSRKWMAERETG 112
                 9***********975 PP

  == domain 2  score: 234.3 bits;  conditional E-value: 5.5e-73
                 TT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  54 svrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydv 152
                 +  GGiLaD+mGLGKT+ +l+ +l+ r  +++     + d  a  tL+v+P sl+ qWe+e+++++s+ ++  + ++g+      n++++p  l+ +++
  CDO71519.1 113 KKTGGILADDMGLGKTISTLTRVLEGRPSKKD-----KADGFAASTLVVCPVSLVSQWESEVKKYTSGLRV--IQHHGG------NRTNDPYELERAHI 198
                 568*********************55553333.....3578999***********************9965..666664......56778999****** PP

                 EEE-HHHHHHHT...................................................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S CS
                 xxxxxxxxxxxxxxx.............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 153 vittYdvlsreaelq.............................................kkrsvlkqvewkrvvlDEghtlknstskaaeavskLsts 206
                 v+t+Y+v+ +e  ++                                             + ++++ +v+w+rvvlDE+h++kn ++kaa a++ L+++
  CDO71519.1 199 VVTSYSVVTSE--YGvylkstgkdegkgkgkgkkrnesdsdsdsdsvsiakriraapkkgNAKDAIFRVKWWRVVLDEAHNIKNRNTKAAIACCALEAK 295
                 *********55..55569*****************************************999************************************* PP

                 -EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHHHHHH.HHHHHHHTT-STTEE---GGGT.....--S---EEEEEEEEE--HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 207 nrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpieaqae.kgrsrLlqllqrlmlrrakkdv.....eknlPpkteeiiflklskverks 299
                 +rw+ltGTP+qns+e+ly+L+kfLr++p++++ tf++ + +p++a ++    +rL  +lq++mlrr+k+ +       +lP++ ++++ ++++++er +
  CDO71519.1 296 YRWCLTGTPMQNSVEELYSLIKFLRISPLNDWSTFNSAIAKPVKAGKPvRALKRLQVVLQKIMLRRTKTTIingkpILELPDRLVNVVECEFDAEERAF 394
                 ********************************************877625679******************97654459******************** PP

                 HH....................HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 300 Ynrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpql 349
                 Yn    +   k+ a+l + ++  +++++   + +l lll+lrq cnhp l
  CDO71519.1 395 YN----SVEAKVQASLEELQQGDINKAY---TSVLVLLLRLRQSCNHPCL 437
                 **....3344444444444444455444...669*************977 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.51
                 HH-TTS-EEE--SSHHHH.-----------------EEEE-HHHHHHHT......TT CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 117 rhvsssalrvlvyggqkk.mkkkntkvapklladydvvittYdvlsreaelqkkrsv 172
                  ++++ +++ + y+g+ + +   +  v+ ++ a+++v++++++  s+  +l   ++v
  CDO71519.1 561 PFLRKERIKFVRYDGSMNkSARDEALVKINTDAATHVILISFKAGSTGLNLTSCNNV 617
                 566667777777777543122233345667777778888888776666655543333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.8   1.1e+04      49      68 ..      59      78 ..      54      79 .. 0.54
   2 !   72.9   0.0   8.4e-24   2.5e-20       2     111 .]     526     640 ..     525     640 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.8
                TSTHHHHHHHHHHHHTTSSS CS
  Helicase_C 49 elpqnereeileqfnkgesd 68
                ++++  r+ i e+fn+g+ d
  CDO71519.1 59 DTEKALRDFINEDFNDGDND 78
                34455555566666666655 PP

  == domain 2  score: 72.9 bits;  conditional E-value: 8.4e-24
                 HHHHHHHHH...HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell...kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 k ++++e+l   +++ eg+k++if++++++l+ ++ +l+k+ ik+++++g+++++ r+e+l + n  + ++ +Li+ +++++G++++++n+Vi +d+++
  CDO71519.1 526 KTRKIMEILresEERGEGEKTIIFSQFTSMLDIIEPFLRKERIKFVRYDGSMNKSARDEALVKINtdAATHVILISFKAGSTGLNLTSCNNVILVDPWW 624
                 5667777777779999***************9999999999************************8555555*************************** PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 n++   q+ +R++R+g
  CDO71519.1 625 NPALEDQAFDRAHRFG 640
                 **************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.3e-09   9.8e-06       4     169 ..      95     304 ..      92     306 .. 0.75
   2 ?   -3.7   0.0       3.4     1e+04     138     153 ..     633     647 ..     633     666 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.3e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee......kflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 l ++Q +  ++++++++  +++ g+++   G GKT+  +  + + + ++k +       +l+++p  sl++q+++e+kk++s  +  i+    ++++++
  CDO71519.1  95 LLPHQVKS-RKWMAERETGKKTGGILADDMGLGKTISTLTRVLEGRPSKKDKadgfaaSTLVVCP-VSLVSQWESEVKKYTSGLRV-IQHHGGNRTNDP 190
                 55666654.5666677757777999***********999888888888887789***88888888.69**************9873.444444444444 PP

                 .......-SEEEEEHHHHHHTH....................................HHHTTT-S...........................EEEEET CS
      ResIII  97 kekdstnkkilvttiqsldadseee............................eeeseellrdrfd...........................viiiDE 140
                   ++ + ++i+vt+++ ++++   +                            +           d                            ++ DE
  CDO71519.1 191 --YELERAHIVVTSYSVVTSEY--GvylkstgkdegkgkgkgkkrnesdsdsdS-----------DsvsiakriraapkkgnakdaifrvkwwRVVLDE 274
                 ..7889999****999999999..335999999999988887544333333320...........25567777777777777888999999999***** PP

                 GGGTTS.TTTHHH.HHT---SEEEEEESS- CS
      ResIII 141 aHrlgakkswrei.lekfkeavllglTATp 169
                 aH+++  ++  +i   +++++++  lT+Tp
  CDO71519.1 275 AHNIKNRNTKAAIaCCALEAKYRWCLTGTP 304
                 ******655555534556889999999999 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.4
                 EETGGGTTS.TTTHHH CS
      ResIII 138 iDEaHrlgakkswrei 153
                 +D aHr+g+ k   +i
  CDO71519.1 633 FDRAHRFGQ-KRAVNI 647
                 699999999.554444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     2e-05     0.059      20     108 ..     120     206 ..      98     219 .. 0.79
   2 ?    2.7   0.0     0.031        94     125     143 ..     270     288 ..     246     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
                 EESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  20 aaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrl 108
                 a + G GKT   l  vl+   ++    +  +  +l+v+P  +L+ q  +++kk+++   lrv    gg+++ ++  +l ++++ivv+  + +
  CDO71519.1 120 ADDMGLGKTISTLTRVLEGRPSKkdkADGFAASTLVVCPV-SLVSQWESEVKKYTSG--LRVIQHHGGNRT-NDPYEL-ERAHIVVTSYSVV 206
                 56779***********977766544322334689999997.7**************6..899988888666.677788.899***9987655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.031
                 EEEETHHHHHHTTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        DEAD 125 lVlDEadrlldqgfsdfin 143
                 +VlDEa+++ + + +  i 
  CDO71519.1 270 VVLDEAHNIKNRNTKAAIA 288
                 8********9988777665 PP

>> Chorion_2  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.7e-06      0.02      23      68 ..     198     257 ..     178     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.7e-06
   Chorion_2  23 i..............ygrgrG.nrgYgrsvesgrrygdsspsdseaislaklalAapeags 68 
                 i              y +  G  +g g++  + r+ +ds +sds ++s ak   Aap++g+
  CDO71519.1 198 IvvtsysvvtseygvYLKSTGkDEGKGKGKGKKRNESDS-DSDSDSVSIAKRIRAAPKKGN 257
                 144444445556666777788777777776688999999.*******************98 PP

>> DTHCT  DTHCT (NUC029) region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.4   2.7e-05     0.081      27      62 ..     221     255 ..     210     277 .. 0.68
   2 ?   -1.5   0.1       1.5   4.3e+03      32      48 ..     451     465 ..     439     482 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
       DTHCT  27 aaaaKgrkarKRktssssedddsdpgkktskatakK 62 
                     Kg+ ++KR++s+s++d+ds +  k  +a+ kK
  CDO71519.1 221 EGKGKGK-GKKRNESDSDSDSDSVSIAKRIRAAPKK 255
                 4556788.8999998886555555444444433333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
       DTHCT  32 grkarKRktsssseddd 48 
                  ++a + + +++  ++d
  CDO71519.1 451 PKNASQNENNDD--ESD 465
                 333333222111..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4652.16
//
Query:       CDO71520.1  [L=219]
Description: hypothetical protein BN946_scf184910.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1616.86
//
Query:       CDO71521.1  [L=570]
Description: hypothetical protein BN946_scf184910.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-14   53.0   0.0    3.8e-14   52.4   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.1e-18   3.8e-14      28     157 ..     260     388 ..     243     390 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.1e-18
  Fungal_trans  28 nssksayaspllllailalGalfsesetkesnssltses....qefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgva 120
                     +  +  ++lllla+++l+a++s+ ++  s ++  + +    +    +   a+ ++  d ++ +s+  ++q+Llll + e + +  a++++++g+a
    CDO71521.1 260 LGPRRRRVPTLLLLAMFSLAARYSSRTADMSPPEDGT-MwtagD---EYMEDAKVIL--DRTYAASRPSTCQALLLLGYREVGIGAMAQAWLYVGMA 350
                   5667788899**************9999888666665.566653...3333455555..888888889***************************** PP

  Fungal_trans 121 vrlarslgLhrnpsyvgkks....lwklweeeaesrrRlww 157
                   vr+a++lgLh+  + +        l+  +++e ++rrR+w+
    CDO71521.1 351 VRMAQDLGLHKSAEKWTA-AlgrsLF--SKAELQERRRIWY 388
                   *************99994.3585333..33346889***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3957.61
//
Query:       CDO71522.1  [L=103]
Description: hypothetical protein BN946_scf184910.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 724.71
//
Query:       CDO71523.1  [L=859]
Description: hypothetical protein BN946_scf184910.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-10   40.6   0.2    9.4e-10   38.1   0.0    2.1  2  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   5.3e-14   9.4e-10      33     149 ..     316     430 ..     306     440 .. 0.88
   2 ?   -1.0   0.1     0.046   8.3e+02      43      63 ..     600     620 ..     594     624 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 5.3e-14
  Transposase_21  33 glatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlravllwt 127
                      l+ dG   + + +    +W  + + y l P l  k+ ++l   +i+Gp++P k+i+ +l P +  l  l +eG+  +da+ ++++  +  l w 
      CDO71523.1 316 QLSIDGAQLYEKKQ--SDCWIYVWVLYSLDPKLRYKKAHVLPGAIIRGPEKP-KNIESFLFPGLYHLSALMKEGLPYWDAVDNKVYINHPFLAWV 407
                     56667777666444..4689999*****************************.79**************************************** PP

  Transposase_21 128 indfPalstlsGlst.kgklacv 149
                       d Pa++++ Gl+  +g  ac 
      CDO71523.1 408 TADGPAMAYMNGLVGhHGARACR 430
                     ************98626888985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.046
  Transposase_21  43 gsmsssysvWpvllipynlPP 63 
                      ++ss y  W  l   ynl P
      CDO71523.1 600 EKISSGYKAWEFLTYFYNLSP 620
                     578999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5673.94
//
Query:       CDO71524.1  [L=259]
Description: hypothetical protein BN946_scf184910.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1809.04
//
Query:       CDO71525.1  [L=536]
Description: hypothetical protein BN946_scf184910.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3775.11
//
Query:       CDO71526.1  [L=307]
Description: hypothetical protein BN946_scf184910.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2090.64
//
Query:       CDO71527.1  [L=216]
Description: hypothetical protein BN946_scf184910.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-07   29.2   6.2    4.9e-05   23.6   0.7    2.3  2  zf-RING_2    Ring finger domain
      8e-06   26.0   2.5    3.2e-05   24.1   0.4    2.3  2  zf-rbx1      RING-H2 zinc finger domain
    0.00045   20.0   3.9      0.016   15.1   0.3    2.3  2  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
    0.00046   19.9   2.4        0.5   10.2   0.1    2.5  2  zf-RING_11   RING-like zinc finger
     0.0036   17.1   2.0     0.0036   17.1   2.0    2.3  2  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.017   15.0   8.2      0.018   14.9   1.9    2.4  2  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
      0.035   14.0   1.5      0.035   14.0   1.5    1.8  2  Prok-RING_4  Prokaryotic RING finger family 4
        3.1    8.0   8.0         14    6.0   3.3    3.0  2  FANCL_C      FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.5    0.0012       2.7       2      16 ..      85      99 ..      84     104 .. 0.85
   2 !   23.6   0.7   2.2e-08   4.9e-05      17      44 .]     168     194 ..     157     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
   zf-RING_2  2 eCpICleelssadsv 16
                +C+ICl+ ++++++v
  CDO71527.1 85 TCMICLCTFKEPKKV 99
                7********998877 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 2.2e-08
   zf-RING_2  17 lllpCgHvfhreClerw.lrssstCPlCr 44 
                 +ll CgH +  +C++ w +++s +CP+C+
  CDO71527.1 168 QLLSCGHAY--HCIDPWlMQKSGRCPYCQ 194
                 4568***99..6*****7777788****5 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.17   3.7e+02       2      14 ..      85      97 ..      84     114 .. 0.81
   2 !   24.1   0.4   1.4e-08   3.2e-05      27      55 .]     167     194 ..     144     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
     zf-rbx1  2 tCaiCrneleeac 14
                tC iC  +++e+ 
  CDO71527.1 85 TCMICLCTFKEPK 97
                8****99999875 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.4e-08
     zf-rbx1  27 vvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 + l +CgHa+H  Ci+ Wl + + +CP c+
  CDO71527.1 167 LQLLSCGHAYH--CIDPWLMQkSGRCPYCQ 194
                 44458****86..******996789****6 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.4    0.0044       9.9       1      12 [.      86      97 ..      86     110 .. 0.87
   2 !   15.1   0.3   7.2e-06     0.016      13      41 .]     168     193 ..     143     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0044
                -TTT-S--SS-E CS
    zf-C3HC4  1 CpiCleeakepn 12
                C iCl+++kep+
  CDO71527.1 86 CMICLCTFKEPK 97
                9*********98 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 7.2e-06
                 .E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  13 elleCkHsfCskCirkilksrkkvkCPlC 41 
                 +ll C+H++  +Ci+ +l  +k+  CP C
  CDO71527.1 168 QLLSCGHAY--HCIDPWLM-QKSGRCPYC 193
                 799*****7..6*******.89999***9 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.5   0.00047       1.1       2      14 ..      86      98 ..      85     103 .. 0.84
   2 !   10.2   0.1   0.00022       0.5      15      26 ..     167     178 ..     159     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00047
  zf-RING_11  2 CsICLeefkpgqa 14
                C+ICL +fk+ ++
  CDO71527.1 86 CMICLCTFKEPKK 98
                ********97655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
  zf-RING_11  15 lfilpCsHtFHf 26 
                 l +l+C+H++H+
  CDO71527.1 167 LQLLSCGHAYHC 178
                 6789*******5 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.2     0.034        75       2      14 ..      86      98 ..      85     101 .. 0.85
   2 !   17.1   2.0   1.6e-06    0.0036      16      40 .]     170     193 ..     164     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.034
  zf-C3HC4_2  2 CpiCldmlkdpsv 14
                C iCl  +k+p  
  CDO71527.1 86 CMICLCTFKEPKK 98
                *********9965 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.6e-06
  zf-C3HC4_2  16 tpCgHvfCqkCilrsLeekn.eCPlC 40 
                   CgH ++  Ci+++L +k+ +CP C
  CDO71527.1 170 LSCGHAYH--CIDPWLMQKSgRCPYC 193
                 58***987..****9999999***** PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.5     0.032        73      36      44 ..      82      90 ..      76      97 .. 0.65
   2 ?   14.9   1.9   8.2e-06     0.018      17      48 ..     169     198 ..     165     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.032
                TT-B-TTT- CS
  zf-C3HC4_3 36 rkkkCpiCr 44
                +k++C+iC 
  CDO71527.1 82 NKATCMICL 90
                566777774 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.2e-06
                 ETTEEEEEE-HHHHHHHHH.TT-B-TTT--B-- CS
  zf-C3HC4_3  17 llpCgHlvlCeeCaekllk.rkkkCpiCrrpie 48 
                 ll CgH    ++C + +l  ++ +Cp+C+ +i+
  CDO71527.1 169 LLSCGHA---YHCIDPWLMqKSGRCPYCQMHIK 198
                 689****...89998888779********9986 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4       1.8   4.1e+03      32      37 ..      85      90 ..      81      99 .. 0.62
   2 ?   14.0   1.5   1.6e-05     0.035      13      40 ..     169     197 ..     164     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
  Prok-RING_4 32 sCPlCq 37
                 +C +C 
   CDO71527.1 85 TCMICL 90
                 555553 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
  Prok-RING_4  13 lepCgHl.vCkeCfdskdlssCPlCqrri 40 
                  l +CgH   C + +  +++ +CP Cq +i
   CDO71527.1 169 LLSCGHAyHCIDPWLMQKSGRCPYCQMHI 197
                  78****98888888888888******887 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.09     2e+02       3      20 ..      84     101 ..      82     105 .. 0.79
   2 ?    6.0   3.3    0.0061        14      55      67 ..     187     199 ..     158     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.09
                 -S-SSS--SS-TT----- CS
     FANCL_C   3 veCgiCyayrldsgevpd 20 
                   C iC++ + +  +v+d
  CDO71527.1  84 ATCMICLCTFKEPKKVSD 101
                 68******9997777665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0061
                 EEE-TTT-SEEEG CS
     FANCL_C  55 fGeCPyCkkkisv 67 
                  G+CPyC+  i+v
  CDO71527.1 187 SGRCPYCQMHIKV 199
                 49******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1516.40
//
Query:       CDO71528.1  [L=213]
Description: hypothetical protein BN946_scf184910.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.2   0.1     0.0002   20.8   0.1    1.1  1  NicO      High-affinity nickel-transport protein
  ------ inclusion threshold ------
      0.042   13.8   3.6      0.059   13.3   3.6    1.2  1  DUF5134   Domain of unknown function (DUF5134)
      0.093   12.7   1.3       0.11   12.5   0.0    1.7  2  NICE-3    NICE-3 protein
       0.89   10.0   4.2       0.83   10.1   0.8    2.3  2  DUF3357   Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   4.4e-08    0.0002      35     129 ..      71     172 ..      68     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.4e-08
        NicO  35 talkrGillslgsslvvvlvavllvvaavlvlr.......ltslsetgaaigteiasFllvilllnllllrklrklfrklerlgrapaaeleaalakrg 126
                 +++++++++ l+s+lv+vlv+vll+ aa++ +         t++ + + +  ++++    v++++ ll++  ++k  + ++r g+++aa   aal++rg
  CDO71528.1  71 RQRRVSLVMFLISALVQVLVVVLLTAAAATNKSpqpehpgQTEFGACNDLAILNLIWLGRVLFVVYLLFWARWIKRVLTRRRYGAQSAAAAAAALDARG 169
                 688999999*****************999998887773333444444444455555555699999999999999999999999**************98 PP

        NicO 127 lls 129
                  ++
  CDO71528.1 170 EVD 172
                 765 PP

>> DUF5134  Domain of unknown function (DUF5134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.6   1.3e-05     0.059      27     126 ..      47     158 ..      38     179 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
     DUF5134  27 lpsagqlavvfalaalwflvlavvrrrataarrlahlyhavmmlAMvyMaaamalaaggghsghaaagasmpgg.....vplvtgvlavyFaaaalvwl 120
                 + s + + +vf+  +  + ++ + r+ ++++ ++     +v++l  v   aa    a +++++ +++g+ + g+     +  + ++  v+F+++ l+w+
  CDO71528.1  47 WRSPWRAFLVFMGYTGGTEAECRARQ-RRVSLVMFLISALVQVLVVVLLTAAA---ATNKSPQPEHPGQTEFGAcndlaILNLIWLGRVLFVVYLLFWA 141
                 33334335555555555555555333.44444444444455555555555444...3333333333333344445665588888999999*****9999 PP

     DUF5134 121 a...rllp........a 126
                 +   r+l         a
  CDO71528.1 142 RwikRVLTrrrygaqsA 158
                 54445554543332220 PP

>> NICE-3  NICE-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.9         2   8.9e+03       6      23 ..      75      93 ..      73      98 .. 0.49
   2 ?   12.5   0.0   2.5e-05      0.11       8      67 ..     122     181 ..     117     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2
      NICE-3  6 vnvvlvialgvl.ifvllf 23
                v++v++++ +++ ++v++ 
  CDO71528.1 75 VSLVMFLISALVqVLVVVL 93
                5666665544331333333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.5e-05
      NICE-3   8 vvlvialgvlifvllfifakRqimRfalksrrgphvpiGhgakkslkkeierrlelvski 67 
                 ++ +i lg ++fv+  +f  R i R+  ++r g+++++++ a  + + e++ + + v++ 
  CDO71528.1 122 ILNLIWLGRVLFVVYLLFWARWIKRVLTRRRYGAQSAAAAAAALDARGEVDLEASAVQSE 181
                 6778999*******************************************9999998875 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.31   1.4e+03       6      31 ..      33      58 ..      27      61 .. 0.73
   2 ?   10.1   0.8   0.00018      0.83      14      54 ..      67     106 ..      60     123 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.31
     DUF3357  6 Peddeaaaaaaararrpllaavlias 31
                Pe  +a++++++  +r+ + a+l+++
  CDO71528.1 33 PEPVDATQTTPRAPWRSPWRAFLVFM 58
                55555677888889998888888776 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00018
     DUF3357  14 aaaararrpllaavliasalvvlvvlvalagvrlagqaslv 54 
                   +ar+rr +  +++++salv ++v+v l  +   +++  +
  CDO71528.1  67 ECRARQRR-VSLVMFLISALVQVLVVVLLTAAAATNKSPQP 106
                 45678888.55555555666655555444433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1616.67
//
Query:       CDO71529.1  [L=99]
Description: hypothetical protein BN946_scf184910.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 694.45
//
Query:       CDO71530.1  [L=658]
Description: hypothetical protein BN946_scf184910.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00021   19.9   0.1    0.00034   19.2   0.1    1.2  1  Peptidase_S64   Peptidase family S64
  ------ inclusion threshold ------
      0.055   12.6   0.3      0.084   12.0   0.3    1.1  1  AIP3            Actin interacting protein 3
       0.14   12.6   0.0       0.23   11.9   0.0    1.2  1  Fez1            Fez1
        0.2   12.0  13.0        0.5   10.8  13.0    1.6  1  CENP-B_dimeris  Centromere protein B dimerisation domain
       0.39    9.8   0.0       0.39    9.8   0.0    2.6  4  D123            D123
       0.87    9.6   4.6        1.5    8.8   4.6    1.3  1  RXT2_N          RXT2-like, N-terminal
        1.3    8.9   7.4          3    7.7   7.4    1.6  1  Sigma70_ner     Sigma-70, non-essential region
        1.4    8.2  11.2        2.2    7.5  11.2    1.2  1  NOA36           NOA36 protein
        1.8    8.2   3.9        3.3    7.4   3.9    1.3  1  FAM176          FAM176 family
        6.8    4.8   7.0         11    4.1   7.0    1.2  1  Nop14           Nop14-like family
        7.9    4.6   5.3         11    4.1   5.3    1.1  1  CDC45           CDC45-like protein
        8.4    5.7   7.4         13    5.1   7.4    1.1  1  SDA1            SDA1


Domain annotation for each model (and alignments):
>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.3e-07   0.00034     595     683 ..     540     634 ..     525     637 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
  Peptidase_S64 595 kvFKiGsttkyTkGelngik.lv..YWldgklqssEFvvns..dssplFAsgGDSGswiLtkledekgLgvlGmLHSyDGelkqFG.LFtpisei 683
                    +v K Gstt+ T G+l+g    v  Y+  g+ +s E  + s    +  F  gGDSG++i +   + ++L   G  H  D     +G LF  + ei
     CDO71530.1 540 RVVKRGSTTNTTVGTLSGFNsFVrrYYPSGNQESIEVTILSheADTGSFSRGGDSGALIASAKGEFVALLTGGATHGTDSADITYGtLFDWVREI 634
                    699*************998634577************99998667789***********988777788877788887777776666566666666 PP

>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   5.6e-05     0.084     197     263 ..     368     435 ..     357     438 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.HXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        AIP3 197 seesdklvtkvddLqDlvedlrkDVvq.RgvrpskkqlesvakeikkakkelkkleeyiktekpvWkk 263
                 +   d+ v  v+ Lq ++ +lr+ + +   v +s+++l + ++e+ k+ ++++k++ +  t+k  W k
  CDO71530.1 368 QVMIDNHVDTVEPLQKQITALRNKIESgIDVAVSQAKLPEWENELRKTCERIEKMKAFFVTVKTKWSK 435
                 566789999**************9976257999*********************************88 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.23     115     174 ..     383     442 ..     341     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
        Fez1 115 lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassFeqERrtWqeeKekVir 174
                 ++ ++ +++ ++  +++  ++++ + ++eL++  ++ e++++ F + + +W++ K++Vi 
  CDO71530.1 383 KQITALRNKIESGIDVAVSQAKLPEWENELRKTCERIEKMKAFFVTVKTKWSKPKDRVIG 442
                 4455555555667788888899999999******************************96 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  13.0   0.00033       0.5      17      46 ..     170     200 ..     157     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
  CENP-B_dimeris  17 deeeeeeeedeededeeddedd.devpvpsf 46 
                      ee++++++d+ed+de+d +d+ +e p  s+
      CDO71530.1 170 VEEDNDDDDDDEDDDEDDSQDEaEEEPAISY 200
                     2566666777777777776665245566666 PP

>> D123  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       4.2   6.3e+03      20      50 ..      13      43 ..      11      53 .. 0.65
   2 ?    3.9   1.1     0.016        24      45      74 ..     171     200 ..     136     207 .. 0.55
   3 ?    9.8   0.0   0.00026      0.39       8     103 ..     346     438 ..     340     443 .. 0.64
   4 ?   -4.4   0.1       5.5   8.2e+03     209     226 ..     630     647 ..     627     648 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.2
                HHHHHHCSSSEE-----.............. CS
        D123 20 efleYLeedgivlpeeseeekesaeesesds 50
                e+l+YL+ d++  +++s++  e+ +  +s+s
  CDO71530.1 13 ELLSYLHIDDVPAEDDSNNLVEAPQLAASSS 43
                6789999999999998887764333333333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.016
                 .......--------------------... CS
        D123  45 esesdsdseesdsedeeeeeeeeeepseef 74 
                 e+++d+d++++d++++++++e+eeep+ ++
  CDO71530.1 171 EEDNDDDDDDEDDDEDDSQDEAEEEPAISY 200
                 223333333333333333333333355555 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00026
                 GS--EEEE.S--HHHHHHHCSSSEE-----...............--------------------...HHHHHHHHHHHHHTTS-EEEE-SS---GG CS
        D123   8 ltikskii.plpeefleYLeedgivlpeeseeekesaeesesdsdseesdsedeeeeeeeeeepseefpeleekikeaieelggavfpKlnwsaPkD 103
                 +  k k++   p++f +YL++ ++++ ++ ++ + + +++ +  +++ ++  d   ++++  e ++e++++ e+i+++ +     v++K  ws PkD
  CDO71530.1 346 SGQKKKVLlMGPRAFNDYLASIQVMIDNHVDTVE-PLQKQITALRNKIESGIDVAVSQAKLPEWENELRKTCERIEKMKAF---FVTVKTKWSKPKD 438
                 55566666355999************99998876.4444444455555555544444444333344555555555444333...499*********9 PP

  == domain 4  score: -4.4 bits;  conditional E-value: 5.5
                 HHHT..TTTSSSSSEEEE CS
        D123 209 ffeeklkekfpdesyvfD 226
                  ++e ++e+fp +++ fD
  CDO71530.1 630 WVREIVQEEFPGANFYFD 647
                 56788999********99 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.6     0.001       1.5      62      91 ..     167     196 ..     129     207 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
      RXT2_N  62 keeeeedeegdeededdddeeeaeaaeenp 91 
                 + e eed+++d++deddd+++++++aee+p
  CDO71530.1 167 DGEVEEDNDDDDDDEDDDEDDSQDEAEEEP 196
                 333334444444444444444344444444 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.4     0.002         3      21      65 ..     135     194 ..     130     207 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.002
  Sigma70_ner  21 rLrdiidGflD.................eeeeeeeeeeeedeeeeeeeedddeeeseseaad 65 
                  r+rd +  +lD                 +++ + e ee  d+++++++eddde++s++ea++
   CDO71530.1 135 RIRDHVVTLLDnrgfsttsvdfvrftwlDKNVDGEVEE--DNDDDDDDEDDDEDDSQDEAEE 194
                  56666666677777777777777776652222222222..2222222222222222222222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.2    0.0015       2.2     270     300 ..     167     195 ..     125     202 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
       NOA36 270 ddegdedddddddeedddeeeddedeeeeee 300
                 d e +ed+ddddd  d+d++edd+++e+eee
  CDO71530.1 167 DGEVEEDNDDDDD--DEDDDEDDSQDEAEEE 195
                 2223333333333..3333333333333333 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.9    0.0022       3.3      63      91 ..     168     196 ..     153     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0022
      FAM176  63 eesekasededeeeeeeeedsseseaeee 91 
                  e e++++d+d++e+++e+ds+++++ee 
  CDO71530.1 168 GEVEEDNDDDDDDEDDDEDDSQDEAEEEP 196
                 44555566666666666666666665544 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.0    0.0072        11     363     390 ..     167     194 ..     148     214 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0072
       Nop14 363 eseseeeeeeeeedeeeeedeeeeeeee 390
                 + e ee+++++++de+++ed++++e ee
  CDO71530.1 167 DGEVEEDNDDDDDDEDDDEDDSQDEAEE 194
                 2222222222222222222222222221 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.3    0.0076        11     131     155 ..     169     193 ..     131     207 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0076
       CDC45 131 esdeedeeeeeeddddeeeeeeeee 155
                 e++e+++++++++ddde+++++e e
  CDO71530.1 169 EVEEDNDDDDDDEDDDEDDSQDEAE 193
                 2211111111111111111111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.4    0.0087        13     120     154 ..     161     194 ..     149     212 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0087
        SDA1 120 widvesdeeeieesdesedeeeeeeeeeekeekee 154
                 w d + d+e +e++d ++d++e+++e+++++e ee
  CDO71530.1 161 WLDKNVDGEVEEDND-DDDDDEDDDEDDSQDEAEE 194
                 555555555222222.2333323332333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      833  (0.046461); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 4059.67
//
Query:       CDO71531.1  [L=1121]
Description: hypothetical protein BN946_scf184911.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-20   72.6   1.7    1.8e-20   72.6   1.7    2.6  2  INCENP_ARK-bind  Inner centromere protein, ARK binding region
  ------ inclusion threshold ------
      0.092   12.8   1.6       0.22   11.5   1.6    1.5  1  Sigma70_r1_2     Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> INCENP_ARK-bind  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   3.5         2   1.8e+04       4      13 ..     823     832 ..     820     846 .. 0.58
   2 !   72.6   1.7     2e-24   1.8e-20       1      55 []    1029    1084 ..    1029    1084 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2
  INCENP_ARK-bind   4 sDdedddede 13 
                       Dd ddd+d 
       CDO71531.1 823 NDDLDDDDDS 832
                      5666666665 PP

  == domain 2  score: 72.6 bits;  conditional E-value: 2e-24
  INCENP_ARK-bind    1 dinsDdedddede.prkkipsWAqspeLrqaLikqepiDpdeiFGpikplnleeiF 55  
                       dins+++d+++++ pr+++p+WAqsp +++aL++q++i+pd+iFG i pl++eeiF
       CDO71531.1 1029 DINSEYSDSEDEDrPRRELPDWAQSPDIAAALQQQSTINPDDIFGRIGPLRMEEIF 1084
                       8********99999*****************************************9 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.6   2.5e-05      0.22      16      28 ..    1106    1118 ..    1105    1118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
                    -THHHHHHHHHHH CS
  Sigma70_r1_2   16 LtaeEEveLAkri 28  
                    LtaeEE+e+A+r+
    CDO71531.1 1106 LTAEEEREYARRM 1118
                    9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 7083.68
//
Query:       CDO71532.1  [L=376]
Description: hypothetical protein BN946_scf184911.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   19.2   3.3       0.33   11.3   0.3    2.8  3  V-SNARE_C  Snare region anchored in the vesicle membrane C-te
  ------ inclusion threshold ------
      0.064   14.3   0.4       0.81   10.8   0.1    2.4  2  DUF5320    Family of unknown function (DUF5320)
        9.3    6.8  13.5        1.3    9.6   0.1    2.9  3  APG6_N     Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   5.6e-05      0.33      10      43 ..     160     193 ..     152     198 .. 0.88
   2 ?   -3.3   0.0         2   1.2e+04      45      54 ..     257     266 ..     244     268 .. 0.65
   3 !    7.8   0.1   0.00066       3.9      21      52 ..     334     365 ..     319     376 .] 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.6e-05
   V-SNARE_C  10 lknShrivdetisiGaailedLhsQretLkrars 43 
                  +n+ r++ e ++ +  ++ +L+sQ e+L ++ +
  CDO71532.1 160 TRNALRLAREAEETARNTVTKLGSQSEKLADTER 193
                 57899************************98876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
   V-SNARE_C  45 lhnvanrlgk 54 
                 ++++ +rlg+
  CDO71532.1 257 IRDTQDRLGR 266
                 5666677665 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00066
   V-SNARE_C  21 isiGaailedLhsQretLkrarsklhnvanrl 52 
                  + G+a+ ++L+ Q+++L r+++k   ++ +l
  CDO71532.1 334 KALGMAMGSELDTQNDRLTRITDKADKLDFDL 365
                 5789********************98887655 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17     1e+03      60      88 ..     126     155 ..      89     165 .. 0.65
   2 ?   10.8   0.1   0.00014      0.81      36      99 .]     269     336 ..     257     336 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
     DUF5320  60 rla.aaetaeaskeeekelLeeqaeaLeee 88 
                 +++   ++  +++ee+ e +++ +++L++ 
  CDO71532.1 126 PPRrGTPPPGEENEEDVEGIKQSMRFLKQD 155
                 222445577788888899999999999975 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
     DUF5320  36 gfGr.....grg.grglgrgfgrrrraggarlaaaetaeaskeeekelLeeqaeaLeeeleaikkrlkel 99 
                  +G+     g g g g gr         +ar  +   ++ +++ee + Le++++   +e+++++krlk l
  CDO71532.1 269 TYGMrddeeGIGgGSGSGRLRTA--AEVQARKNQRSRYQFEADEEDDQLEDEIDDNLDEIADVSKRLKAL 336
                 23332222211114444444444..233333335688999999************************976 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00022       1.3      45     124 ..     138     217 ..      92     221 .. 0.80
   2 ?   -0.8   0.4      0.35   2.1e+03      50      64 ..     237     251 ..     224     268 .. 0.42
   3 ?    4.0   2.8     0.012        69      44      86 ..     303     350 ..     288     374 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00022
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereele.aelaaleeelealeeeeerfwreynelqlelleleeeldslea 124
                 ++e++e ++++++ l+++  +  ++  +l +e ee + + + +l +++e+l +  er++   + ++l  +++ +el++l+ 
  CDO71532.1 138 NEEDVEGIKQSMRFLKQDSVNSTRNALRLAREAEETArNTVTKLGSQSEKLAD-TERHLDVSKGHSLRAEDKTDELKQLNR 217
                 5789999********99988777777777666666550566667777777765.578899999999999999999999985 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.35
      APG6_N  50 eeleeeleklekeee 64 
                 ++++ ++e+ + e+e
  CDO71532.1 237 AKIQARYEEDRLERE 251
                 122222222222222 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.012
      APG6_N  44 k....qdeeleeleeeleklekeeeelleeLkeleke.reeleaelaa 86 
                 +     dee+++le+e+++  +e ++  + Lk+l  +  +el+ +   
  CDO71532.1 303 RyqfeADEEDDQLEDEIDDNLDEIADVSKRLKALGMAmGSELDTQNDR 350
                 244557888899999999999999999999998854313455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1181  (0.0658709); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2528.09
//
Query:       CDO71533.1  [L=1369]
Description: hypothetical protein BN946_scf184911.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.4e-115  386.4  69.0   3.3e-114  382.6  69.0    2.0  1  Mpp10           Mpp10 protein
   4.3e-103  345.7   0.0   1.1e-102  344.4   0.0    1.6  2  Amidase         Amidase


Domain annotation for each model (and alignments):
>> Mpp10  Mpp10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.6  69.0  3.7e-118  3.3e-114      42     600 ..     700    1360 ..     689    1368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 382.6 bits;  conditional E-value: 3.7e-118
       Mpp10   42 kkspLeelvvegfDeeqiWqqlelqneav.........................leellkkiskllakkeklklldeeeeeesee............ 101 
                  k++p+++l veg+ +eqiW qlel+++++                         l++                                        
  CDO71533.1  700 KETPINQLFVEGMSDEQIWAQLELRTQNIcnvldyaldgptetsdsgdedeerqLKK---------------------------Mrqalidegfdpe 769 
                  6789*************************5665555444444433322222222222...........................0223333333333 PP

       Mpp10  102 ..........seeeeeeeeeeeeeeeeeeeeeeeeeeekeeseekeeeeesekeeeeededeeeeieeee.....kkskkkkk......kkkkksvv 177 
                             ee+e+e++++e+e ++++e+eee++++ ++ e  e+ +e+++ ++eededee ei e +     k+     +      k++ + v 
  CDO71533.1  770 elegmefgedGEEDEDEASDDEDEGDDDDESEEEDDDDLDDVELGEDVQELRDPSDEEDEDEEPEIGEPSflnggKR-----TiklkppKRGGHPVL 861 
                  33444555432333333333333334444555555567778888888888888888889998888887774433222.....123446578888899 PP

       Mpp10  178 ddkFFkldemekflekeekkeerkk........eeeeddeeidyfedlss....ddedeeekksaedlkYeDFFdkpee.................. 244 
                  dd+FF+l+ +++ +e++e k  ++         eee+++e++dyf+ +++      +++ e +   +l YeDFFd+p++                  
  CDO71533.1  862 DDGFFDLAAFNAEIEAAESKSVSRGklskddddEEEDEEEDVDYFAPVDEqvaaA-QEDLE-DVGGELHYEDFFDPPSRakvpkarketksadepkp 956 
                  *******************88777778889998999999*******999999742.33333.5789************9999988888877777777 PP

       Mpp10  245 ...............................kkkkkkkkkdeeeadeeeedeeee..eeeeeeeee......eeeeedleeedeeeeeeeeeedeee 302 
                                                 +          ee+d ee deeee  +e++ +e+e             e +++             
  CDO71533.1  957 skgkvrfheevrvkkikakgknlpvstmfyeE----------EEDDGEEFDEEEEglQEDHMDESEdglgldG------EGDEML------------ 1025
                  77777777766666555555443333332221..........1111111112111332222222221122211......111111............ PP

       Mpp10  303 keekkkve..........................................eekeeeeekSsfekrqeklqekIkkLEeealaeKpWqLkGEvtAkdR 357 
                         +                                          ee++ +e++S++ekr + l+e+I+ LE+e++ +K+W+L+GE+t+++R
  CDO71533.1 1026 -------SpsseeeaeddesgdedesmngdeenegyetierlkddlfaddEEEKPQESLSTYEKRMAALREEIAALEAENVGQKDWTLMGEATSRSR 1115
                  .......011111111222222222333444555666677788999*999999999***************************************** PP

       Mpp10  358 PenSLLeedleFdrtarpaPviTeettetLEdiIkqRIkdkafDDveRkvkpkeeekeykkrleldqeKskeSLAeiYEkeYlkqte...nkqekee 451 
                  P+nSLLeedleF+r  + +PviTee+ ++LE+ Ik RI+d++fDDv+Rk   +++++  +  +el + Ksk+SLAeiYE+eY  ++    ++++ + 
  CDO71533.1 1116 PQNSLLEEDLEFERVMKSVPVITEEVVHSLEERIKSRILDHQFDDVVRKRLVDDKPFLPSRFFELQDTKSKQSLAEIYEDEYSAAQSgriAGEDRDG 1212
                  ************************************************************************************99999*99***** PP

       Mpp10  452 eekkeHeeIkklmksLflkLDALsnfhFtPkpakpevkivsnlpaismEEvapvavSdasllAPeEvkkkkkgdvkskeErtktdkkreRrkkKrkk 548 
                  ++kkeHeeI+k++++++ kLDALsn+hFtPk +k ++  vsn++a ++E + p++ +++++lAPeEv++ +++++ +++E+t  +k   R k+K+ +
  CDO71533.1 1213 KLKKEHEEIEKMWDNICSKLDALSNAHFTPKAPKATITTVSNVAAATLESALPTTKATTTMLAPEEVYAPSSSNLRARSELTPAEKRALRNKQKKAN 1309
                  ******************************************************************************************9999888 PP

       Mpp10  549 rkklkekeeeqklkeklkpekkkekkeekakklkkltk.aknvtvikeegkkk 600 
                  +k +++ ++   +++  +p+     k++k++ lk+l k +k vtv+++++k++
  CDO71533.1 1310 KKVREAIQK--AAEKIGRPRGVGDVKRQKEAALKTLVKsGKGVTVVGKKSKEV 1360
                  887777777..66666678888999**********99857789***9999874 PP

>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.0  1.2e-106  1.1e-102       1     440 [.      81     539 ..      81     546 .. 0.87
   2 ?   -2.9   0.0      0.27   2.4e+03     414     414 ..    1272    1272 ..    1190    1351 .. 0.57

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 1.2e-106
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgk 98 
                 e++ af kr+  +++++n+l ++f + al++Aa+ld++ + +g++ gpLhG+P+s+KD++ vkg++t +G+ a+ ++ ae+Da++v++L +aGav++++
  CDO71533.1  81 EVTTAFSKRAIIAQQAVNCLTEIFLDRALRRAAELDAYMKeHGTTVGPLHGLPVSLKDQFPVKGLETVMGYAAWIGHAAEEDAVLVQLLLRAGAVLFVR 179
                 79************************************************************************************************* PP

                 E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEE CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGpl 193
                 Tn+++++m+ +t n+vfg+t NP++++ tpGGSSGG+ A++A++++pl++G+D+GGSiR+P++fcgl+G+KP++ r++ +g      ++ s+   +Gpl
  CDO71533.1 180 TNVPQTLMWGETYNNVFGRTLNPYNRKLTPGGSSGGESALIAMHGSPLGVGSDIGGSIRVPSHFCGLYGFKPSSHRIPTYGNLnsldGQDSIPTAIGPL 278
                 *********************************************************************************999**9************ PP

                 ESSHHHHHHHHHHHBS--TT-TTS----..HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHH.HHH CS
     Amidase 194 arsvedlalllrvilgedpkdstssvip..eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleeals.lyy 289
                 ++s++ + ++lr il ++p+++    +p    + d++ ++    ++l  G++++ g ++++p++ ra++++++aLe+aGh+v  +e +s+++a   ++ 
  CDO71533.1 279 TTSLSGVTAFLRGILDMEPWRYCPETVPkpWSQDDYSLKSRGGGEQLCFGIMWDEGSVKPQPPILRALRMTKAALEAAGHKVSAIEWKSFQHAEYvAIA 377
                 *********************999999877445677777777888*************************************99999988888776555 PP

                 HHHH.HHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCC.HHHHHHHHH.HHHHHHHHHCCC......BSEEEE CS
     Amidase 290 lilv.aeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeassky.ylkaqkvrr.llrrefakafee......lDvlls 379
                 +  + a++++ ++ +            + + l+ ++ ++ l + v + +   +  l+a   +++ ++k++++ r +  +++     e      +D+l++
  CDO71533.1 378 RSTWlADGGEDYN-S---------CLITGEPLINSMAPDALPDDVPAFRVTRK-PLTAF--EQWqLNKERRALRkAHLDRWESTVSEtgtgrpIDALIC 463
                 5555055554433.2.........23345566666666777666666555544.33322..22323333322222444444444444677777****** PP

                 ESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCC.T.................TECEEEEE CS
     Amidase 380 Ptaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagks.ed................glPvGvqv 440
                 P+ap+pa+++g  ++ i  yt ++n ld++a v+pv+ +  + ++ pa ++  +                glPv++q+
  CDO71533.1 464 PVAPYPAVPHGRTRSSI--YTIIWNTLDYPALVIPVTKVIPEVDAKPARETfWSeddravhelynptalsGLPVAIQL 539
                 *************9865..*****************************998644689********************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.27
                  H CS
     Amidase  414 p 414 
                   
  CDO71533.1 1272 T 1272
                  0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.36u 0.35s 00:00:01.71 Elapsed: 00:00:00.52
# Mc/sec: 7946.17
//
Query:       CDO71534.1  [L=236]
Description: hypothetical protein BN946_scf184911.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1698.13
//
Query:       CDO71535.1  [L=764]
Description: Polysaccharide Lyase Family 8 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-68  230.1   3.3    4.8e-68  229.4   3.3    1.3  1  Lyase_8    Polysaccharide lyase family 8, super-sandwich doma
    1.4e-21   76.8   0.0      2e-21   76.2   0.0    1.2  1  Lyase_8_N  Polysaccharide lyase family 8, N terminal alpha-he
    1.4e-09   38.2   0.1    3.1e-09   37.2   0.1    1.6  1  Lyase_8_C  Polysaccharide lyase family 8, C-terminal beta-san


Domain annotation for each model (and alignments):
>> Lyase_8  Polysaccharide lyase family 8, super-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   3.3     8e-72   4.8e-68       1     257 [.     389     632 ..     389     633 .. 0.91

  Alignments for each domain:
  == domain 1  score: 229.4 bits;  conditional E-value: 8e-72
                 EEEEGGGTEEEEEETTEEEEEE---TTSBS---BTTBSTTGCCTTSSEEEEECSSTCTTTSTTTTS-TTS-TT-EEE--SS-TTTTSSS.T----S-S- CS
     Lyase_8   1 hklFfamDrvvhrrpgyafslkmaSkRianyEvvngenlkgwhtgdGatylyvsGddeYsniwptvdwyrlPGtTvdekeralkaekvkkgatkskesf 99 
                 +++F+a+D++v+r+pgy+++l+m+SkR++n+E+  + n  g+h++dG++y+ ++G deY++i++++dw+ +PG+Tvd+ ++al+++++ +   +++++f
  CDO71535.1 389 NRVFYANDYAVQRGPGYVTTLRMYSKRTQNTECTDEANNFGFHLADGTVYTHLNG-DEYEDIVAAWDWNLIPGITVDYGATALTCSTTRH---TGTQTF 483
                 689****************************************************.****************************998655...45**** PP

                 EEEEESSSCEEEEEEEEETT..SSEEEEEEEEEESS-EEE.EEEEEEE-SSSEEEEEEEEEEEETTCE...EEETT.CCEEEEEETCEEECTTCCCCTE CS
     Lyase_8 100 vGGvsdgeyGaagmdlkkkgakstltakKsWfflddeiva.lgagitssstaaveTtidqrklngevv.tetltskksesteakklkWlhegevqhdki 196
                 vGG+sdg +Ga++m+++++ +ks l+++K+Wffl++++ + + a itss++a++++++dqrk+ g+v+ +     + + + ++  + W       h+++
  CDO71535.1 484 VGGASDGLVGAVAMRYENPISKS-LNWRKTWFFLENDVQFvMVARITSSTSAPILSVLDQRKHVGDVIvN-GA-VSGGGNFSQPSTLW-------HGGV 572
                 *******************9776.***********9997615699********************99852.22.45566777788899.......9*** PP

                 EEEETTCEE.EEEEEEEEEEEECGGGBTS---EEEEEEEEEEEEEEESSSSEEEEEEEEET- CS
     Lyase_8 197 gYvfpeeta.kvsvskeertgswsdinssskkevtkevftlwidhgakpknasyaYavlPga 257
                 gYvf+ ++  ++sv++ ++tgsws+i+ ss+ +vt ++ft+w++h  +  +++++Y v+P++
  CDO71535.1 573 GYVFNTSDPvTLSVDVSTKTGSWSAIGASSQPPVTVDMFTAWLNH--NDISSAISYSVFPAT 632
                 ****8775468999999****************************..55678********87 PP

>> Lyase_8_N  Polysaccharide lyase family 8, N terminal alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   3.4e-25     2e-21      30     231 ..      56     276 ..      31     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 3.4e-25
                 HHHHHHS-TSS..TSS-TTT-....TTTSTCCH..HHHHHHHHHHHHHHC...-TTSTTTT-HHHHHHHHHHHHHHHHHTSSTT............... CS
   Lyase_8_N  30 ekllktlqksanrtslwedlp....kkkasanl..tktyrrletlakayt...epgselyqdekllaaiveglaflsetkynvske............. 106
                 +++l+tlq+    ++ w+d++     ++++an+   ++ +r+ t+a a+       +++ q++++ +ai+ ++ f+ +++  +                
  CDO71535.1  56 ATWLSTLQP----NGQWPDVDytagCDAPTANWkaENHWERILTFASAWHgglRNANQYVQSNQVRSAISSAMGFWFSNDFTNPACidsggesacpcgt 150
                 455666655....889999999998788889998799************7444689********************9988776655688999******* PP

                 .....SSHHHHHTHHHHHHHHHHHHCCCSSSHHHHHHHHHHCHH.HSGGCSEESTTSSS..EES-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHC. CS
   Lyase_8_N 107 ...ekgNWWdweigtpralndiLillhdelkeeeitkytaaiek.fvpdpagarvslanspfestGaNrvDlalvvlirglLekdekeisqavealsk. 200
                       NW ++ ig+p +++++  ll d l+++e+ + t+ +e+ f+  +    +   n     tGaN  D+a   + +glL ++ + +s+a   +   
  CDO71535.1 151 pglWNTNWFSNVIGIPTSVGEVCLLLGDSLTPSELGNCTKITERsFATFD----TG-INGVSAITGANALDIASIGIDEGLLGQNATLVSSAFGRVHAd 244
                 997778********************************999876144444....33.3356678****************************9999866 PP

                 .CCSEBSSSSEEBTTS-EEETTTEE-TTTHHH CS
   Lyase_8_N 201 .vlklvtegdGfyaDgSfiqHsnipYtGsYGn 231
                  v++   + dG++aDgSf qH+ i Y+G YG+
  CDO71535.1 245 aVIQNGVKADGIRADGSFGQHTGIIYNGNYGK 276
                 6******************************8 PP

>> Lyase_8_C  Polysaccharide lyase family 8, C-terminal beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   5.2e-13   3.1e-09       3      69 .]     649     722 ..     647     722 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 5.2e-13
                 EEESSSEEEEEETTTTEEEEEESSS..EEEEEC.....TCTEEESSSEEEEEEEETTEEEEEEEBTTTTBSEEC CS
   Lyase_8_C   3 laNtadvQAVrhaelglvaavfwka..gtvtlk.....nlsltvdkpasvlvkkeggsltvsvsDPtqklssvt 69 
                 ++N+ ++ A  ++++++v +vfw++  g+vt+      +++l+v++ +s  v  + +++tv+v+DPtq ls++t
  CDO71535.1 649 IRNDGSISALLDKAKNMVFLVFWESngGSVTIPpltqgGATLKVQSTGSSNVILRMDTWTVTVADPTQLLSTLT 722
                 89***********************999**9999****99999999999988899***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 5139.10
//
Query:       CDO71536.1  [L=876]
Description: Polysaccharide Lyase Family 8 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-67  227.0   1.7    4.2e-67  226.3   1.7    1.3  1  Lyase_8    Polysaccharide lyase family 8, super-sandwich doma
    8.1e-20   71.0   0.1    1.2e-19   70.4   0.1    1.2  1  Lyase_8_N  Polysaccharide lyase family 8, N terminal alpha-he
    4.6e-10   39.8   0.1    1.2e-09   38.5   0.1    1.7  1  Lyase_8_C  Polysaccharide lyase family 8, C-terminal beta-san


Domain annotation for each model (and alignments):
>> Lyase_8  Polysaccharide lyase family 8, super-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   1.7     7e-71   4.2e-67       1     258 []     504     755 ..     504     755 .. 0.91

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 7e-71
                 EEEEGGGTEEEEEETTEEEEEE---TTSBS---BTTBSTTGCCTTSSEEEEECSSTCTTTSTTTTS-TTS-TT-EEE--SS-TTTTSSS..T----S-S CS
     Lyase_8   1 hklFfamDrvvhrrpgyafslkmaSkRianyEvvngenlkgwhtgdGatylyvsGddeYsniwptvdwyrlPGtTvdekeralkaekvkk.gatkskes 98 
                 +++F a+D++v+r++gy+++lkm+S+R++n E+ n++n+ g+h++dG++y+y++G +eY++i +++dw+ +PG+T d+ +++l++++ +  g    ke+
  CDO71536.1 504 NRMFDANDYMVQRGSGYVTTLKMYSTRTKNGECTNSQNPLGFHLADGTVYTYLQG-NEYEDIAAAWDWNLIPGITNDYGATPLSCDHEQFsG----KEA 597
                 69*****************************************************.****************************98855555....*** PP

                 -EEEEESSSCEEEEEEEEETT..SSEEEEEEEEEESS-EEEEE.EEEEE-SSSEEEEEEEEEEEETTCE..EEETT.CCEEEEEETCEEECTTCCCCTE CS
     Lyase_8  99 fvGGvsdgeyGaagmdlkkkgakstltakKsWfflddeivalg.agitssstaaveTtidqrklngevvtetltskksesteakklkWlhegevqhdki 196
                 fvGGvs g++Gaa+m+++++++  tl+ +K+Wffld+++ +++ ++++ss++a+v++++dq++lng v+ + +   +  + +++++ W       hd++
  CDO71536.1 598 FVGGVSTGTIGAAAMRYTNPYTG-TLKFQKAWFFLDNDVQHVMiSSVNSSTSAPVVSVLDQKRLNGIVYVDGIRLFHAGNFTKARSLW-------HDNV 688
                 *********************76.6**************987626777788888************9996666677788899999999.......9*** PP

                 EEEETTCEE....EEEEEEEEEEEECGGGBTS---EEEEEEEEEEEEEEESSSSE.EEEEEEEET-- CS
     Lyase_8 197 gYvfpeeta....kvsvskeertgswsdinssskkevtkevftlwidhgakpkna.syaYavlPgas 258
                 gY f ++      ++ v+   rtg+w +i+ s+ +++t ++f++w++hg+  + +  +aY+v+P++s
  CDO71536.1 689 GYTFEQPLFdskfDLAVDFGPRTGDWATIGISTVGTTTVDIFSAWLNHGSGDDLDvPIAYTVYPAVS 755
                 ****75533555599*********************************99998888********985 PP

>> Lyase_8_N  Polysaccharide lyase family 8, N terminal alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.1   2.1e-23   1.2e-19      43     256 ..     173     413 ..     145     439 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 2.1e-23
                 TSS-TTT-......TTTSTCCH..HHHHHHHHHHHHHHC...-.TTSTTTT-HHHHHHHHHHHHHHHHHTSSTT....................SSHHH CS
   Lyase_8_N  43 tslwedlp......kkkasanl..tktyrrletlakayt...e.pgselyqdekllaaiveglaflsetkynvske................ekgNWWd 113
                 ++ w+d +       ++ +an+    + +r+ t+a a+    e  + ++ ++++ll+ai  +++f+ e++ + +                     NW +
  CDO71536.1 173 DGKWPDSEvdyttgCDARRANWpaEDHWNRIVTMAAAWHggvEgSSQSFVNSSTLLDAIHSAMDFWFENDFQDQACldsgglsscpcgtpglWNTNWFS 271
                 55566666666666667788888799************7332213345678899***************9998877999**********997778**** PP

                 HHTHHHHHHHH.HHHHCCCSSSHHHHHHHHHHCHHHSGGCSEESTTSSS..EES-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHC..CCSEBSSSS CS
   Lyase_8_N 114 weigtpralnd.iLillhdelkeeeitkytaaiekfvpdpagarvslanspfestGaNrvDlalvvlirglLekdekeisqavealsk..vlklvtegd 209
                 + ig+p  +++  L +  + l++++i++ t  + +  +       +  n     tGaN  D+a+  + +glL ++   +++  + + k  v++   + d
  CDO71536.1 272 NIIGIPELVGEgCLLVGVASLTDTQINNCTHILTRAFGTF----DHNVNGLGYLTGANTLDVAKIGIDSGLLINNASMLTDGYSRIHKevVIQNAVKAD 366
                 *********8735555578899999999999887766655....2344467889********************************998899******* PP

                 EEBTTS-EEETTTEE-TTTHHHHHHHHHHHHHHHHTTSTT---HHHH CS
   Lyase_8_N 210 GfyaDgSfiqHsnipYtGsYGnvllkGlgqllalvagtkwaisdekl 256
                 G++ DgSf qH+ i Y+G YG+   + +  l    agt+++ ++ + 
  CDO71536.1 367 GIRPDGSFGQHGGIIYNGNYGKDYTNDVLALEIAAAGTQYSAKNANT 413
                 ****************************************9998764 PP

>> Lyase_8_C  Polysaccharide lyase family 8, C-terminal beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.1   1.9e-13   1.2e-09       3      69 .]     771     843 ..     771     843 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.9e-13
                 EEESSSEEEEEETTTTEEEEEESSS..EEEEEC......TCTEEESSSEEEEEEEETTEEEEEEEBTTTTBSEEC CS
   Lyase_8_C   3 laNtadvQAVrhaelglvaavfwka..gtvtlk......nlsltvdkpasvlvkkeggsltvsvsDPtqklssvt 69 
                 ++N+a++ AV++ ++++ ++vfw+a  g++t+         +l+++++ +++++   ++ t++vsDP+qkl+sv+
  CDO71536.1 771 IKNDAHISAVYDVSHHTAMFVFWDAngGSATFIpsllpgPVTLATNGNSAIVLN--LQNRTLTVSDPSQKLGSVQ 843
                 78***********************99999999****99999999999999999..77778999*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5741.92
//
Query:       CDO71537.1  [L=261]
Description: hypothetical protein BN946_scf184911.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-24   85.1   0.3    1.2e-23   83.5   0.3    1.8  2  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    1.2e-11   44.3   0.0    2.3e-11   43.4   0.0    1.4  1  KH_2            KH domain
  ------ inclusion threshold ------
      0.074   13.6   0.0       0.14   12.6   0.0    1.5  1  UN_NPL4         Nuclear pore localisation protein NPL4


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.78   4.7e+03      19      34 ..      26      41 ..       7      42 .. 0.59
   2 !   83.5   0.3   1.9e-27   1.2e-23       2      83 .]     106     188 ..     105     188 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.78
                    HHHHHHCC-SEEEEEE CS
  Ribosomal_S3_C 19 irramkagakGikiqv 34
                     r++ ++g  G+ ++v
      CDO71537.1 26 TRELSEEGYSGCDVRV 41
                    3444456677776665 PP

  == domain 2  score: 83.5 bits;  conditional E-value: 1.9e-27
                     HHHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----..TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   2 aeqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvpl..htlradidyavaeaktkyGiiGvkVwI 83 
                     +++l  ++++Rra++ ++r +m++gakG++++vsG+L+ a +a+s+k+++G +++  +++ + +dyav+++ +++G++G+kV+I
      CDO71537.1 106 RYKLLGGLAVRRACYGVLRFVMESGAKGCEVVVSGKLR-AARAKSMKFTDGFMIHsgQPAVEFVDYAVRHVMLRQGVLGIKVKI 188
                     678999********************************.*******************************************98 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.8e-15   2.3e-11       1      74 [.      20      92 ..      20      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.8e-15
                HHHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEET CS
        KH_2  1 eipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVk 74
                e++ ++++e++++g+s+++++ t+ r++i+ir+ + + v+G +G++i+++++ ++k++ k+ +   +l+ +kV+
  CDO71537.1 20 ELNDFFTRELSEEGYSGCDVRVTHARTEIIIRATHTQEVLGEKGRRIRELTALVQKRF-KFPDNSLELYAEKVQ 92
                577899**************99************************************.699999999999987 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.4e-05      0.14      21      54 ..      61      94 ..      46     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
                -TTSBHHHHHHHHHHHSS-STTT-EEESSTTCGC CS
     UN_NPL4 21 sekstlktllekvaeelkfsengfslylernktt 54
                ++   +++l  +v++++kf++n ++ly e+ + +
  CDO71537.1 61 EKGRRIRELTALVQKRFKFPDNSLELYAEKVQYR 94
                66677899********************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1866.87
//
Query:       CDO71538.1  [L=302]
Description: hypothetical protein BN946_scf184911.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-41  140.0   0.1    5.5e-41  139.1   0.1    1.5  1  Thiolase_C  Thiolase, C-terminal domain
    1.6e-21   76.9   0.4    3.9e-18   65.8   0.1    2.5  3  Thiolase_N  Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.1   6.1e-45   5.5e-41       3     121 ..     178     296 ..     176     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 6.1e-45
                 -SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHCT CS
  Thiolase_C   3 plakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkkeg 101
                 +++k++s a vgv+p+ +g++P+ ai+kvl k+gl+ ed+d++EinEAFa+q+ +++++l++  ek+N nGG+ial HPlG++G+R+vvt l elk++g
  CDO71538.1 178 VVGKYVSSAFVGVEPRYMGISPVAAIPKVLAKTGLQKEDVDVWEINEAFASQFAYCVEQLQVPIEKINPNGGSIALTHPLGMTGTRQVVTGLAELKRRG 276
                 5678899999***************************************************************************************** PP

                 TSEEEEEEEETTTEEEEEEE CS
  Thiolase_C 102 gklgvaalCigggqgvalvi 121
                 +++  +++Cig+g+g a+++
  CDO71538.1 277 AEILCTSMCIGSGMGGAAIF 296
                 ***************99987 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   9.1e-05      0.82       1      32 [.      36      68 ..      36      97 .. 0.78
   2 !   65.8   0.1   4.3e-22   3.9e-18     186     259 ..      99     168 ..      94     169 .. 0.94
   3 ?   -2.8   0.0      0.37   3.3e+03      30      46 ..     202     218 ..     200     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 9.1e-05
                EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHH CS
  Thiolase_N  1 vvivsaartpigk.fggslkdlsaeeLlaealk 32
                vv+  a+rt++g+  +g lkd++++eLl+ + k
  CDO71538.1 36 VVVTFAKRTAMGRaRKGQLKDIPVDELLHGLCK 68
                79999********99************988776 PP

  == domain 2  score: 65.8 bits;  conditional E-value: 4.3e-22
                 HHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 186 aaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                  a kag F++ei+Pv++ g    ++++ d+++r++vt+e+La+lkpaF ++G  tAgn+s++ DGaa  +l+++
  CDO71538.1  99 GAVKAGIFSEEIIPVEIRG----TVISVDDTVRQGVTLESLAALKPAFMENGASTAGNSSGVGDGAALCILTTR 168
                 699**************99....68*******************************************999876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.37
                 HHHHHHHHHTS-GGGCC CS
  Thiolase_N  30 alkallekagvdpeevd 46 
                 a+ ++l+k+g+++e+vd
  CDO71538.1 202 AIPKVLAKTGLQKEDVD 218
                 67889999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2086.41
//
Query:       CDO71539.1  [L=500]
Description: Polysaccharide Lyase Family 4 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-25   87.6   0.1    1.4e-24   86.9   0.1    1.4  1  CBM-like         Polysaccharide lyase family 4, domain III
      9e-19   67.0   0.2    1.8e-18   66.1   0.2    1.6  1  fn3_3            Polysaccharide lyase family 4, domain II
     0.0042   17.3   0.4     0.0042   17.3   0.4    1.9  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> CBM-like  Polysaccharide lyase family 4, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.1   2.3e-28   1.4e-24       1     165 []     293     497 ..     293     497 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 2.3e-28
    CBM-like   1 tlWeIGepDrtaaeFlngdak.lkn.tlmh...........lyPsd...dlvytvGtsdaskdwlfaqvnr...........yktttwtikFklkevqa 72 
                 +lW+IG+pD+t++eF+ng +  l + +  h           ++P +    +++tvG+s + +dw+++++++           +  + wti+F+++++ a
  CDO71539.1 293 ELWRIGIPDKTSGEFKNGWERdLTHpL--HpskyrifwgawDFPTEfpgGVNFTVGKSVEGRDWNYVHWSQygptytrndtvTDINRWTINFDIDAATA 389
                 69****************977665532..23457777777755555777******************************9999999********77664 PP

    CBM-like  73 a.....gtatLrialagasaar..............lqvrvNgkvvgelpsakakgkdraiarggihrGlnrlyefeipaslLkegeNtitltvvekfl 152
                 +     + at++++la+a++++              l+++vN+  ++ +++ + + ++++  r++i  +   + ++++p+++Lk+g N++ l++++  +
  CDO71539.1 390 HklttrSIATFTVQLAAAKTTSgntdvvqgaypnlpLNIYVNDGRSPLVWTIQWFESSSCAERSAIS-CHLLSNKLQFPGTWLKKGPNSFVLELPH--A 485
                 41111156788999999988556799*****************99999999999**********888.*************************994..4 PP

    CBM-like 153 spfsgvlyDairL 165
                 +p   v yDa+rL
  CDO71539.1 486 AP-VYVQYDALRL 497
                 44.6899***997 PP

>> fn3_3  Polysaccharide lyase family 4, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.2   3.1e-22   1.8e-18       8      74 ..     211     280 ..     204     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.1e-22
       fn3_3   8 lavltgsvvsfqne...tkayQYwteadssgsftipnVkpGtYrltvYadglfgdykqdsvtVtagkttt 74 
                 +a+l++++v+fq++   ++ayQY ++  ++g++ +++Vk+GtYrltv a+g+fgd++qd+++Vtagk+t 
  CDO71539.1 211 VAILSANGVHFQDSaaiPTAYQYFATDIRDGNVHFDRVKAGTYRLTVVASGIFGDFVQDNIVVTAGKQTH 280
                 799********************9999999*************************************996 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4     7e-07    0.0042      36      80 ..     239     284 ..     210     286 .. 0.87
   2 ?   -3.8   0.1       2.8   1.7e+04      15      75 ..     398     410 ..     390     416 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7e-07
  CarboxypepD_reg  36 adGafrlrglppgtysvtvsapG.yatatreevtltagqtttldit 80 
                      +dG+  ++ +++gty++tv a+G +  + + ++++tag++t +++t
       CDO71539.1 239 RDGNVHFDRVKAGTYRLTVVASGiFGDFVQDNIVVTAGKQTHVRAT 284
                      89*****************99997789999***********99876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.8
  CarboxypepD_reg  15 agatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGyatatreevtltagqtt 75 
                      a  tV ++                                                a +tt
       CDO71539.1 398 ATFTVQLA------------------------------------------------AAKTT 410
                      33444444................................................33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3615.50
//
Query:       CDO71540.1  [L=359]
Description: hypothetical protein BN946_scf184911.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-52  176.1   0.0    6.8e-52  175.3   0.0    1.4  1  SAD_SRA      SAD/SRA domain


Domain annotation for each model (and alignments):
>> SAD_SRA  SAD/SRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   0.0   3.8e-56   6.8e-52       2     157 .]     137     296 ..     136     296 .. 0.92

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 3.8e-56
                 SS-BTTB-TT-EESSHHHHHHTTSS--SS-SEEEE-GGGEEEEEE-S-STT-EEETTEEEEE-SSSBTT--B.............-S---SS.THHHHH CS
     SAD_SRA   2 fGhipgvevGdtfksraelleagvHrplqagIsgskeegAvSivlsggYeddedegdeliYtGsggrkkkkkkk.........eqsedqkle.rgnlaL 90 
                 +G+ipg+ vG+++++r++++ + vH+p++agIs    +gA+S++lsggYedd+d g+ ++YtGsggr+ k   k         +qs+dq++e   n+aL
  CDO71540.1 137 YGAIPGIAVGTWWETRQACSLDAVHAPWVAGISAG-PQGAYSVALSGGYEDDVDLGEAFTYTGSGGRDLKGT-KenpknlrtaPQSCDQTFEnPFNRAL 233
                 8********************************98.67*****************************44333.3367899************99***** PP

                 HHHHHHT--EEEEEEEE----EE...........EEEEEEEEEEEEEEEE-..TTSSEEEEEEEEE-SSS CS
     SAD_SRA  91 aksletkkpVRVirgskekkkkkkkkskyaPe.gyrYdGlYkvekywqekg..ksgfkvfkfkLrRlpgq 157
                 ++s+etkkp+RVirg      k    s yaP+ gyrYdGlY+vek+w+e g  ++g+ v+kf L+R+pgq
  CDO71540.1 234 QRSCETKKPIRVIRGY-----KL--GSIYAPAeGYRYDGLYTVEKAWMEAGlnEHGYLVCKFALKRIPGQ 296
                 **************77.....44..589***88******************98999*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2630.02
//
Query:       CDO71541.1  [L=520]
Description: hypothetical protein BN946_scf184911.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00068   19.4   4.8    0.00068   19.4   4.8    3.9  4  zf-CCCH_4  CCCH-type zinc finger
  ------ inclusion threshold ------
      0.011   15.6   3.8      0.011   15.6   3.8    3.9  3  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      0.011   15.9   5.9      0.021   15.0   0.2    2.7  2  zf-CCCH_3  Zinc-finger containing family
        2.4    8.9  10.2       0.22   12.2   0.6    2.9  2  Torus      Torus domain


Domain annotation for each model (and alignments):
>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.51   2.3e+03      16      19 ..      29      32 ..      29      34 .. 0.65
   2 !   19.4   4.8   1.5e-07   0.00068       1      22 []     357     378 ..     357     378 .. 0.96
   3 ?    2.1   0.3     0.038   1.7e+02       2      17 ..     397     413 ..     397     414 .. 0.91
   4 ?    2.7   2.1     0.026   1.2e+02       3      13 ..     425     435 ..     423     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.51
   zf-CCCH_4 16 nCrF 19
                +CrF
  CDO71541.1 29 HCRF 32
                5777 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.5e-07
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsHd 22 
                 ++C y++  +C  Gd+C+++H+
  CDO71541.1 357 PPCNYYYLAKCNNGDRCKYEHN 378
                 79*******************6 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.038
   zf-CCCH_4   2 lCpyfakG.sCrfGdnC 17 
                 +Cp + +G  C  Gd C
  CDO71541.1 397 PCPVVNNGnHCALGDSC 413
                 7999999999******9 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.026
   zf-CCCH_4   3 CpyfakGsCrf 13 
                 Cpy  +++C+f
  CDO71541.1 425 CPYRKQNKCKF 435
                 *********99 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   3.8   2.5e-06     0.011       1      26 [.     354     378 ..     354     379 .. 0.93
   2 ?    1.3   0.2     0.076   3.4e+02      12      21 ..     404     413 ..     397     413 .. 0.79
   3 ?    4.4   1.2    0.0084        38      13      23 ..     417     427 ..     415     428 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 +k ++C +++    C+ GdrCk+ H 
  CDO71541.1 354 QKPPPCNYYYL-AKCNNGDRCKYEHN 378
                 589********.***********996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.076
                 HS--TTGGG- CS
     zf-CCCH  12 tGyCkyGdrC 21 
                 + +C  Gd+C
  CDO71541.1 404 GNHCALGDSC 413
                 449******* PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0084
                 S--TTGGG-SS CS
     zf-CCCH  13 GyCkyGdrCkF 23 
                 ++C+ G++C++
  CDO71541.1 417 HFCPKGPKCPY 427
                 69*******97 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   4.8e-06     0.021       6      27 ..     357     378 ..     352     392 .. 0.87
   2 ?    2.2   1.3     0.047   2.1e+02      15      28 ..     418     431 ..     406     440 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.8e-06
   zf-CCCH_3   6 ddcyffyystctkGdscpfrhe 27 
                   c ++y ++c+ Gd+c + h+
  CDO71541.1 357 PPCNYYYLAKCNNGDRCKYEHN 378
                 56******************96 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.047
   zf-CCCH_3  15 tctkGdscpfrhee 28 
                  c kG +cp+r ++
  CDO71541.1 418 FCPKGPKCPYRKQN 431
                 4999******9865 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6     5e-05      0.22      69      98 ..     355     384 ..     347     393 .. 0.80
   2 ?   -0.1   3.1      0.34   1.5e+03      80      98 ..     406     424 ..     390     452 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5e-05
                 T--B-HHHHHT--SSGGG-SSB-S---SS- CS
       Torus  69 esyfClfFarGlCakGkkCeylHrlPteed 98 
                 +   C ++    C +G +C+y H+ P + +
  CDO71541.1 355 KPPPCNYYYLAKCNNGDRCKYEHNYPLTPE 384
                 55679999999**************97655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.34
                 --SSGGG-SSB-S---SS- CS
       Torus  80 lCakGkkCeylHrlPteed 98 
                  Ca G +C + H  P+  +
  CDO71541.1 406 HCALGDSCIMNHFCPKGPK 424
                 5888888888888886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4020.73
//
Query:       CDO71542.1  [L=445]
Description: hypothetical protein BN946_scf184911.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3250.37
//
Query:       CDO71543.1  [L=111]
Description: hypothetical protein BN946_scf184911.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 944.78
//
Query:       CDO71544.1  [L=625]
Description: hypothetical protein BN946_scf184911.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-138  460.6   0.0   4.2e-138  460.3   0.0    1.1  1  UPF0160   Uncharacterised protein family (UPF0160)
    3.7e-25   88.8   0.0      9e-24   84.3   0.0    2.2  1  SurE      Survival protein SurE


Domain annotation for each model (and alignments):
>> UPF0160  Uncharacterised protein family (UPF0160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.3   0.0  4.6e-142  4.2e-138       2     317 .]      18     337 ..      17     337 .. 0.98

  Alignments for each domain:
  == domain 1  score: 460.3 bits;  conditional E-value: 4.6e-142
     UPF0160   2 igTHngkFhaDevlAvalLrllpeykdaelvRtrdpevleecdivvDVggvyDpakkryDHHqrefnetfsekaktklSSaGLvYkhfgkeiikkllkl 100
                 igTHng+Fh+De+lAv+lL+++++y++a l R rdp++l++cdivvDVggvyD++++r+DHHqr+f+e+f  ++ktklSSaGLvYkhfg+eii++ l++
  CDO71544.1  18 IGTHNGTFHCDEALAVFLLKRTKAYANAGLKRNRDPAILNTCDIVVDVGGVYDEKTQRFDHHQRGFEEVFGYGFKTKLSSAGLVYKHFGREIIANRLQI 116
                 9************************************************************************************************** PP

     UPF0160 101 eldeeevellyeklyeefveaiDaiDnGisvyee.vekkykiktslssrvgrlnpewneeekeedederFekAselvgeeflekvkylakswlpareiv 198
                 +++++++++l+ k+y+ef+eaiDaiDnGis+y++  +++y+i+t++s+rvg++np+wnee + e+ d++F +As++vg+efl++++y+a++wlpar++v
  CDO71544.1 117 SQEDPKIDTLWLKMYKEFIEAIDAIDNGISQYPTeLKPRYRINTDVSKRVGHFNPAWNEEVDAETVDAKFLQASAMVGTEFLDRLDYYANAWLPARDLV 215
                 ********************************999**************************************************************** PP

     UPF0160 199 kealekrkevdesgrilvleesvpwkehllelekelkie..kkvlyvlyed.eeekwrvqavpvskesfesrkpLpeeWrGlrdeeLsevsgiegavFv 294
                  eal+krkevd+sgri+++e++ pwkehl+ele++l i   +k  yvly+d + ++wr+qavpvs+esfesrk+Lpe+WrG+rd++Ls++sg++g++Fv
  CDO71544.1 216 LEALNKRKEVDPSGRIVLFESFAPWKEHLFELEETLAIPeaEKPIYVLYPDeTANNWRIQAVPVSSESFESRKALPEQWRGVRDDALSQLSGVDGCIFV 314
                 ************************************987779*******775999******************************************** PP

     UPF0160 295 HasgFiggnktkegalemAkkaL 317
                 HasgFiggnktkeg+l++A+ aL
  CDO71544.1 315 HASGFIGGNKTKEGVLRLANLAL 337
                 *******************9987 PP

>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0     1e-27     9e-24      23     194 ..     342     513 ..     325     514 .. 0.74

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1e-27
                 TTTSEEEEEEESSS-TTCTTS--SSSEEEEE.EEECS.TTTCEEEESS-HHHHHHHHHHTTTTTS.SSEEEEEEEES---GGGG.GG-HHHHHHHHHHH CS
        SurE  23 aaghevvvvaPdserSgigkaltleeplrve.seeee.eeeeeyavsGtPadcvklaleellkekkpdlVvSGiNhGaNlgtdv.lySGTvgAaleaal 118
                   g++v vv+P+s++S+igka+ +++ ++ +    ++ +++ e++  + P +  ++              +SG+N G+N+++++ l+SGT+gAal +al
  CDO71544.1 342 PSGWDVKVVIPSSQKSWIGKAYHIKDIITGRyYYPRNpDGMGEVSEVSRPLQEGEF-----------AEWISGPNLGRNSSAAFaLSSGTIGAALSSAL 429
                 469*******************7777775332111111333333333444443333...........3469**************************** PP

                 TTSEEEEEEEESSSSS-SSS---HHHHHHHHHHHHTTETTS-..........SS-EEEEEEE...SS.GCG-SEEEE-B--CCSCE CS
        SurE 119 egipaiAvSlaskkeeekkeedtfeaaakvaaklvekliekll.......lekvellnvNvP...eleeeeikgvkvtrlgrrrys 194
                 +++++iA+S+++  +++  +++ +e a+++ a+++++l ++           +v+l+nvN+P   el ++    + +tr++r++y+
  CDO71544.1 430 SKVRSIALSYGTVLHPT--PTEFYEPAHQLGARIIDHLWRNWGadegglrAGEVDLYNVNIPmipELLSDAGLTICWTRIWRNSYG 513
                 ***********875444..677899999999999977755555999999999**********66533333333577******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4646.80
//
Query:       CDO71545.1  [L=399]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.2   0.6       0.16   11.6   0.6    1.4  1  DUF3494   Protein of unknown function (DUF3494)


Domain annotation for each model (and alignments):
>> DUF3494  Protein of unknown function (DUF3494)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   8.7e-06      0.16      95     178 ..     125     218 ..      47     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.7e-06
                 TTEEEESEEEEE....SS-EEE-SS-EEEE-TT-TT--EEEEESS-EEE-TT-...-EEEETT--G...GGEEEEESS-EEE-TT-EEEEEEEE CS
     DUF3494  95 ggrtLapGvYks....tsavtittgdltLDaqGdanavwiFqiagtLtvasgs...svvLinGAqa...knvfWqvggsatlgtgstfeGtila 178
                 + + La GvY+     +s v+ +tg  +LD +  + +  +     tL  ++ +   ++ +i+G ++   ++v W  g + tl+ +++f+Gti+ 
  CDO71545.1 125 DSTWLASGVYRNsvriSSRVQYNTGLFILDLNHAPWGCGVWPAWWTLGGGQWPytgEIDIIEGVHDnahNQVTWHTGPNCTLNPNTSFTGTIVE 218
                 45789999998522224556669999****99999999999999999999777888999999875411267*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2727.25
//
Query:       CDO71546.1  [L=201]
Description: hypothetical protein BN946_scf184911.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-92  308.3  11.7    2.1e-92  308.1  11.7    1.0  1  Ribosomal_L15e  Ribosomal L15


Domain annotation for each model (and alignments):
>> Ribosomal_L15e  Ribosomal L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.1  11.7   1.2e-96   2.1e-92       1     189 [.       2     189 ..       2     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 308.1 bits;  conditional E-value: 1.2e-96
                     -SHHHHHHHTTSTTSHHHHHHHHHHHHHHTTS-SEEEESS-SSHHHHHHHT--SSTTEEEEEEEEE-SS---..---SS---GGGG-SSS---SS CS
  Ribosomal_L15e   1 gaykylrelwkkkqsdvlrellrerlweyrqepavvrverptrldrArrLGYkakqGivvvrvrvrrGgrkkkvskgktgrkpkrqgvnklkpak 95 
                     gayky+ el+kkkqsdvlr+llr+r+weyrq+++++r++rp+r+d+ArrLGYkakqG+v++rvrvrrG+rkk+v+kg+t++kp+rqgvn+lkp++
      CDO71546.1   2 GAYKYIGELYKKKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKKHVRKGATYGKPVRQGVNQLKPQR 96 
                     79********************************************************************************************* PP

                     -HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHT-TTTGGGGSGGGTTGGGGT-SHHHHHHTT-S-SS.TT-TTTSS-TG CS
  Ribosomal_L15e  96 slqaiaeervgrklpnlrvLnSYwvgeDgtykyyEvilvDpshkairndkkinwickkvhkhRelrGltsagkksRGlrkkglkgaekirgsrr 189
                      l+++aeervgr+++nlrvLnSYwv++Dg ykyyEvilvDpshkair+d++inwi+k+vhkhRe+rGlt++gkk+RGl +kg++++++ ++s++
      CDO71546.1  97 GLRSVAEERVGRRCGNLRVLNSYWVNQDGVYKYYEVILVDPSHKAIRRDPRINWITKPVHKHREARGLTATGKKNRGL-GKGHRYNHTPGWSTW 189
                     ******************************************************************************.*********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1522.96
//
Query:       CDO71547.1  [L=1154]
Description: hypothetical protein BN946_scf184911.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-42  144.6   0.0    5.2e-42  143.9   0.0    1.3  1  RVT_1           Reverse transcriptase (RNA-dependent DNA poly
    1.7e-05   24.5   0.0    3.3e-05   23.5   0.0    1.4  1  Exo_endo_phos   Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.067   12.6   9.0       0.14   11.6   9.0    1.4  1  Golgin_A5       Golgin subfamily A member 5
       0.12   12.5   0.6       0.38   11.0   0.6    1.8  1  YwqJ-deaminase  YwqJ-like deaminase
       0.19   11.5   3.9        1.4    8.7   1.5    2.7  2  DUF445          Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   1.4e-45   5.2e-42       3     209 ..     692     911 ..     687     949 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 1.4e-45
                 -TT.S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS
       RVT_1   3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 
                 K++ ++yRpi ll+ dyk+l+k++a rL  v+  +++++q gf pgr +  ++   +++ + +++k  + +++ lD +ka+d++ ++ l+r l++f++p
  CDO71547.1 692 KTKIENYRPITLLNPDYKLLSKVLAIRLAAVAPDIVHPSQAGFVPGRRLRNQTqlaRMMIHWAEAKEINGTIVALDQEKAYDRIAHDYLWRVLHTFGIP 790
                 44479**********************************************99*9*9999998999999****************************** PP

                 .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T................TEEECTTEEEEEESSHHHHHHHHHHH CS
       RVT_1  99 tklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra..........kgvtllrYaDDililskskeelqelleav 187
                 + ++n+++s+++++ ++v++ng +s ++++++g++qG +lS llf l++++l+ ++rk            + ++ +++aDD++ +  + +++  l +++
  CDO71547.1 791 PGFTNIVRSLYRDAMTCVTINGVTSNTYKVYRGVRQGDPLSCLLFDLAIEPLSAMIRKSElkgfdisnrlEALKATLFADDTTTYLHEDDDFGVLQNIL 889
                 **********************************************************99*************************************** PP

                 HHHHHHTT--BEGGG-EEE... CS
       RVT_1 188 eewlkesglkinpeKtklvlft 209
                  +w++ ++ k+n++Kt+++ ++
  CDO71547.1 890 DTWCSAAKAKFNMKKTEIIPIG 911
                 *****************99666 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   9.1e-09   3.3e-05       2     217 ..     121     355 ..     120     364 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.1e-09
                    EEEESTG.........CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.......TTCEEEEECCHECSSSTTSSEEEEEECS CS
                    xxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   2 twNvngq.........aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal.......ggflgasstsptgggggggnggavlsrf 81 
                    + N+ng+         +           +l  ++ +++  vl+LQE++  e+ + +l  +             as    +  + +  +g+av+++ 
     CDO71547.1 121 SLNINGFgslvsdhpeN--------KWNNLYRMMNEHRIGVLLLQETHLTERRVADLHDMFakrikifS----AS----HPSAPTQKEGVAVVINK 200
                    77888877777644221........234577777777888***********999888887688754332....22....2367899********** PP

                    TEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE...................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  82 pltslfrrtfiefndlvaalrreplaakleqlni...................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarps 158
                    +l s              ++    ++ ++                          + +  +  + ++ ++++++ +     ++p + aGDfN+  +
     CDO71547.1 201 KLVST-------------EGLLAHTVVPG----RalqvsvpcrggdkrhllciYAPSSDGVTERKMFFQQVRRFYDEHPTVPKPDLMAGDFNTIED 279
                    **888.............22222222222....133335577788888888999999999999999999999999999999999999********* PP

                    GGGBSCGHHHHHHCTTTH.......H..........SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEE CS
                    xxxxxxxxxxxxxxxxxx.......x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 159 dddsrvlrtrglalapap.......v..........glyllgggptptyvtraggsrlDrilaspalalfrsgvlp 217
                    + d   + ++  +  +++       +            +    + +    + a++srlDri+ +p+ + f ++  +
     CDO71547.1 280 SIDRMPMSANYDSSTEDLddlksalGlmiadgwrmtFNHRRDYTFYRGSGAAATMSRLDRIYTTPEIFDFARQWEI 355
                    **99999999999999998777665166677789999999999999999999************966666555444 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.0   3.8e-05      0.14      68     174 ..     402     506 ..     393     510 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
   Golgin_A5  68 qqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslsssses 166
                 ++  q ++ l+++ea+  ++ ++++  l++l++     ++a+e+ +a + +l +e + +++ l++ ka+       + +e++ l++ql + + +   ++
  CDO71547.1 402 ERGMQAMNALAEIEAHGRTDEQNAQTALHSLKHDWM--EMAREKERATVPKLIQEAQQMRDGLKKLKASQALDGAAKAAEVNLLTEQLHKLEEKRLRQK 498
                 555688999**********************99988..5666666999*************************************************** PP

   Golgin_A5 167 elesRlkq 174
                 +l  R ++
  CDO71547.1 499 QLKGRARH 506
                 ***99876 PP

>> YwqJ-deaminase  YwqJ-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6    0.0001      0.38      41      88 ..     426     499 ..     399     521 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
  YwqJ-deaminase  41 pkdlHPlvqsrLdeliv...........eakreraae...........gaglhAEvaavsdaLydleae.....a 88 
                     + +lH+l ++ ++               ea++ r+ +           ga + AEv+++ ++L++le++     +
      CDO71547.1 426 QTALHSLKHDWMEMAREkeratvpkliqEAQQMRD-GlkklkasqaldGAAKAAEVNLLTEQLHKLEEKrlrqkQ 499
                     55666666666554443333333333433333333.246677777777********************9432220 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   0.00038       1.4     190     268 ..     424     502 ..     389     562 .. 0.86
   2 ?    1.8   0.0     0.047   1.7e+02     161     217 ..     967    1022 ..     962    1031 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00038
      DUF445 190 eltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeea.lwealkdlllkdlneee..s 268
                 ++++ l+ +k+d  + +re+e+++v +li+++++   +++ ++klk +   d + ++ e + l+e+l +l +k+l++++   
  CDO71547.1 424 NAQTALHSLKHDWMEMAREKERATVPKLIQEAQQ---MRDGLKKLKASQALDGAAKAAEVNlLTEQLHKLEEKRLRQKQlkG 502
                 34889999**************************...9********998888777777777699999999999999866443 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.047
      DUF445  161 ekikelidelieeesgklvlesivsmflreltsilekvksdpdhllreeedkkvrel 217 
                  +ki+e++d++   ++    +++i++m++ ++t++l +v++ p   ++++++k + ++
  CDO71547.1  967 AKITEALDRWKAGRKSLEGKRHIAQMLFGGMTQFLTDVQRMP-PNISQRLTKILWRY 1022
                  6789999999666655555********************655.44555556555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.48
# Mc/sec: 7198.43
//
Query:       CDO71548.1  [L=473]
Description: hypothetical protein BN946_scf184911.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3266.55
//
Query:       CDO71549.1  [L=520]
Description: hypothetical protein BN946_scf184911.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-08   32.4  20.5    3.4e-07   29.5   7.4    2.8  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.2    8.9   7.5         11    5.8   0.0    3.4  2  DUF2157   Predicted membrane protein (DUF2157)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   4.0   7.3e-05      0.66      29      84 ..       3      57 ..       1      63 [. 0.81
   2 !   29.5   7.4   3.8e-11   3.4e-07     146     351 ..      61     290 ..      53     292 .. 0.68
   3 ?   -0.4   0.0     0.046   4.1e+02     203     227 ..     465     487 ..     428     497 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 7.3e-05
       MFS_1 29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfass 84
                 + + ++ll+++++l + ++ l++G+l+ r+G   + +l+  + +lg ++ll+ s+
  CDO71549.1  3 TNNTKFSLLISAFSLNSTWTPLVGGVLASRLGTTLTSILTTGIIFLGQACLLI-SN 57
                56678999************************999888888888888555553.44 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 3.8e-11
       MFS_1 146 sslgWravfyilaivsllafvlfllllpeepperkrkspkeee.............kgtgpaplvp.......awkallkdp............vlw.i 211
                 s +  +a+fy+  ++++l+f +  l+++ + +   r+s++e+e             +                a+k++ k++            v+w +
  CDO71549.1  61 SRFRPHAPFYASMFLTALSFAI-NLVYVLSSKWLVRESGAELEaselnaeahtcaaS--------AasmseakALKEVAKKRmvylrditklgdVFWvY 150
                 55567899***********994.3566677777777777777666555566666642........0334444457777777744444444444455643 PP

       MFS_1 212 llialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllll.vlv 308
                 + + +l++ ++++ ++ l+  +lq +++l+   +a++  + + +++++l l++g+++dr+++  +++ l+ll++ l+++++++la++ + + + + +++
  CDO71549.1 151 IGLNVLCG-TVWAPFTHLVANILQCRYNLT-ESEASTKGSYVLAGSVFLYLITGFVVDRVKKrNFIMKLFLLSACLTLACYVWLALPPEWTKTPIpAII 247
                 33333333.244445555555899999999.56666666666666666788********7774788999999999***********9444444443555 PP

       MFS_1 309 liGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                  + +g+gf   +l +++ + +p ++  t +g+   + + g+ +
  CDO71549.1 248 SFALGHGFSPLLLVVIVPRIVPLKYVSTTLGAHKALEQTGSTI 290
                 5888****999*******************9999888888776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.046
       MFS_1 203 llkdpvlwillialllfffgfsgll 227
                 +++  v+  +l++ +l+++++ +++
  CDO71549.1 465 VRRGEVF--ALLCGALIGLAWILFM 487
                 3333333..3333333333333322 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   6.8      0.11   9.9e+02      68     112 ..     188     232 ..      30     234 .. 0.88
   2 ?    5.8   0.0    0.0013        11      30      62 ..     463     495 ..     438     500 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.11
     DUF2157  68 llllvllllslllg.avlwrdrrvpprlgeallllaalllgaaial 112
                   +l+  ++ +l++ +v+ r  ++++++ +++ll a+l l + ++l
  CDO71549.1 188 SYVLAGSVFLYLITgFVVDRV-KKRNFIMKLFLLSACLTLACYVWL 232
                 455555555555555888775.789999999999999999999998 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0013
     DUF2157  30 rrrsfleallvlGalllglGlilfvAanWqgls 62 
                 ++ +++e++++l   l+gl+ ilf+   W +l+
  CDO71549.1 463 AEVRRGEVFALLCGALIGLAWILFMGTAWLKLQ 495
                 3445699**********************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3503.85
//
Query:       CDO71550.1  [L=394]
Description: hypothetical protein BN946_scf184911.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0031   17.5   0.0      0.005   16.8   0.0    1.2  1  Rad17         Rad17 P-loop domain
     0.0085   16.5   0.0      0.014   15.8   0.0    1.3  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.042   13.4   0.1        1.3    8.6   0.0    2.1  2  Ras           Ras family
      0.063   13.6   0.0       0.11   12.8   0.0    1.4  1  AAA_22        AAA domain
       0.13   12.1   0.0       0.27   11.0   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
       0.13   12.5   0.0       0.22   11.9   0.0    1.3  1  AAA_19        AAA domain
       0.15   12.4   0.0       0.27   11.6   0.0    1.4  1  RNA_helicase  RNA helicase
       0.21   11.1   0.0       0.44   10.1   0.0    1.4  1  AAA_7         P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06     0.005      47      70 ..     279     302 ..     262     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
       Rad17  47 iLLisGPsGCgkstvvkvLskelg 70 
                  LL+ GP GCgkstv++   k +g
  CDO71550.1 279 SLLVIGPHGCGKSTVIQKGLKHYG 302
                 699*************98877776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.3e-06     0.014      25      48 ..     278     301 ..     266     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.3e-06
      AAA_16  25 elvllsGesGvGKsslvrellral 48 
                  ++l++G+ G+GKs+++++ l+++
  CDO71550.1 278 VSLLVIGPHGCGKSTVIQKGLKHY 301
                 689**************9877765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.041        91       2      17 ..     280     295 ..     279     301 .. 0.87
   2 ?    8.6   0.0   0.00059       1.3      72      95 ..     366     389 ..     356     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.041
                 EEEEESTTSSHHHHHH CS
         Ras   2 lvlvGdsavGKtslll 17 
                 l+++G  ++GK++++ 
  CDO71550.1 280 LLVIGPHGCGKSTVIQ 295
                 689*********9986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00059
                 ESEEEEEEETTBHHHHHTHHHHHH CS
         Ras  72 aegillvyditsresfenvkkwve 95 
                  +gi++++d+t+ +s+++++++++
  CDO71550.1 366 WNGIMICFDVTDPDSLRHAEDLLS 389
                 589**************9998876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.9e-05      0.11       7      29 ..     279     301 ..     276     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                 +l+v+G+ G+GK+t++++ l+ +
  CDO71550.1 279 SLLVIGPHGCGKSTVIQKGLKHY 301
                 689************99866655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.27      24      39 ..     279     294 ..     267     295 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
      AAA_29  24 atlltGpsGsGKSTll 39 
                 + l++Gp G GKST++
  CDO71550.1 279 SLLVIGPHGCGKSTVI 294
                 589***********98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.7e-05      0.22       9      62 ..     276     326 ..     272     370 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62 
                 +e  llv+++ G+GK++v+++ ++++   +   peei l ++ g+ +   ++r 
  CDO71550.1 276 PEVSLLVIGPHGCGKSTVIQKGLKHYGLGR---PEEIQLESPEGKGVFTYTQRW 326
                 566789*******************98776...567777777776666666555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.27       2      49 ..     281     324 ..     280     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtg 49 
                   ++ Gp+g+GKSt++++     lk+++l + +++   +pe + +  Yt+
    CDO71550.1 281 LVIGPHGCGKSTVIQK----GLKHYGLGRPEEIQLESPEGKGVFTYTQ 324
                   689************9....7778888888888888888888888875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019      0.44      35      56 ..     279     300 ..     274     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
       AAA_7  35 pvllvGptGtGKtviikdllkk 56 
                 ++l++Gp G+GK+++i++ lk+
  CDO71550.1 279 SLLVIGPHGCGKSTVIQKGLKH 300
                 689**************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2752.07
//
Query:       CDO71551.1  [L=459]
Description: hypothetical protein BN946_scf184911.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  106.9   0.0    2.2e-30  106.2   0.0    1.4  1  RasGEF    RasGEF domain


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   1.2e-34   2.2e-30       1     176 [.     188     363 ..     188     364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 1.2e-34
      RasGEF   1 elAeqltlieaelfskikpeellgsawsked.rspnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqsspv 98 
                 ++A+++t+i+  +f  i  e+++ +   k+d ++  ++ +   +n++  w++s ils++++k R++ iekfi++a+++r l+N+++l a++++++s+  
  CDO71551.1 188 DIAQEMTRIQCVFFLLI--EHVFVQG--KKDiEADPITMYNLVSNHFGEWIVSVILSHDKPKGRVRQIEKFIDVANRLRALRNYSGLRAVVAGINSATF 282
                 69*************99..4444433..44433344666777889999************************************************999 PP

      RasGEF  99 srLkkt..weavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl..egk.iNfeKr 176
                 +  +     +  s ++ k++++  +l+++ +++++yr al+++  +  ciP l ++l+dl+  +egnpd+   + + i++ K+
  CDO71551.1 283 EGDESLelLRTKSTERWKSFQQWDQLLQSVRSHQKYRMALRNT--KGACIPALEVHLSDLIRAHEGNPDYHddDPTkIHWAKF 363
                 8764432222223345667779999******************..999***********************984455***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3176.95
//
Query:       CDO71552.1  [L=770]
Description: hypothetical protein BN946_scf184911.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-48  163.6   0.0    3.2e-47  160.6   0.0    2.1  2  DEAD        DEAD/DEAH box helicase
    9.4e-31  106.4   0.1    7.6e-29  100.3   0.1    2.7  3  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.066   12.0   0.2          1    8.1   0.1    2.6  2  UTP25       Utp25, U3 small nucleolar RNA-associated SSU proc


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   5.3e-51   3.2e-47       1     176 []     207     379 ..     207     379 .. 0.96
   2 ?    0.3   0.0     0.084     5e+02      43     104 ..     426     487 ..     409     500 .. 0.72

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 5.3e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 t+iQa++ip +l g+dv+++a TGsGKT+af+ip+l++++ +   k+  ++++l+++PtreLa q+++  +k+  ++d+r  l++gg + ++q ++l+ 
  CDO71552.1 207 TPIQAATIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRdrgKKAAATRCLVLVPTRELAVQCYEVGTKLAAHTDVRFALVVGGLSVKSQEATLRT 305
                 89***********************************99887899999999**********************************************99 PP

                 TCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 ++d+v++tpgrl+d+l ++ ++ l+ + +lVlDEadr+l++gfsd++ +i++++       + +rq++++SAT++++v++l
  CDO71552.1 306 RPDVVIATPGRLIDHLrNSPSFMLDALDILVLDEADRMLEDGFSDELTEIIKSC-------PPNRQTMLFSATMTDSVDEL 379
                 9*************997778899*******************************.......67889*********999875 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.084
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgt 104
                 k++ + +++i   +++La+q+   ++ +  ++d +++  ++++++ + l++++ g vd++++t
  CDO71552.1 426 KRTFKSRVIIFFRSKKLAHQMRIVFSLLDMKCD-ELHGDLSQEQRLRALQQFRDGhVDYLMAT 487
                 45667899999999******9999977777666.44444555555555555554458888877 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.023   1.4e+02      14      61 ..     254     305 ..     239     314 .. 0.77
   2 ?   -2.7   0.0       1.3   7.5e+03       6      32 ..     352     380 ..     350     391 .. 0.68
   3 !  100.3   0.1   1.3e-32   7.6e-29       6     111 .]     421     525 ..     416     525 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.023
                 TTTSEEEEEESSHH...HHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  14 eeggkilifvntid...rlek..vklllekkgikvavlhgelpqnereeileq 61 
                 +   ++l+ v+t++   ++++  +kl   + ++++a + g l+ +++e++l+ 
  CDO71552.1 254 AAATRCLVLVPTRElavQCYEvgTKLA-AHTDVRFALVVGGLSVKSQEATLRT 305
                 566789********8777766755555.4558****************99986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
                 HHHHHHHTTTTSEEEEEESSHH.HHHH.H CS
  Helicase_C   6 llellkleeeggkilifvntid.rlek.v 32 
                 l+e++k+   ++++++f+ t + ++++ v
  CDO71552.1 352 LTEIIKSCPPNRQTMLFSATMTdSVDElV 380
                 55666777788999999988875666443 PP

  == domain 3  score: 100.3 bits;  conditional E-value: 1.3e-32
                 HHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqri 104
                 l++l  ++  +++++if ++++ +++++++ +  ++k+  lhg+l+q++r+++l+qf++g++d+L+atd a+rG+di+++++Vin+d+p ++++y +r+
  CDO71552.1 421 LVAL-CKRTFKSRVIIFFRSKKLAHQMRIVFSLLDMKCDELHGDLSQEQRLRALQQFRDGHVDYLMATDLASRGLDIKGIETVINYDMPSQLAQYLHRV 518
                 4444.589999***********8877777766669**************************************************************** PP

                 TTSSSTT CS
  Helicase_C 105 GRtgRag 111
                 GRt+Rag
  CDO71552.1 519 GRTARAG 525
                 *****97 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.051     3e+02      75      98 ..     256     279 ..     243     286 .. 0.74
   2 ?    8.1   0.1   0.00017         1     319     416 ..     420     514 ..     355     537 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.051
       UTP25  75 rpkvLillptreaalevvelllkl 98 
                  ++ L+l+ptre a+++ e  +kl
  CDO71552.1 256 ATRCLVLVPTRELAVQCYEVGTKL 279
                 4789**********9987765555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00017
       UTP25 319 ilpqlkkssskssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpefy 416
                 +l +l k  + +s+++i++ s     ++r  ++  +++  +++   s+++  ra ++F +g+   l+ t+ +   r  +ikg+++vi Y++P++   y
  CDO71552.1 420 LLVALCK-RTFKSRVIIFFRSKKLAHQMRIVFSLLDMKCDELHGDLSQEQRLRALQQFRDGHVDYLMATDLAS--RGLDIKGIETVINYDMPSQLAQY 514
                 4555555.45677888888888888888888888888888999999999999*****************9875..99***************986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1518  (0.0846673); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.54
# Mc/sec: 4324.38
//
Query:       CDO71553.1  [L=844]
Description: hypothetical protein BN946_scf184911.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-43  148.8   0.1    2.5e-43  148.0   0.1    1.3  1  ANAPC4       Anaphase-promoting complex, cyclosome, subunit 4
    0.00059   20.1   0.0     0.0013   19.0   0.0    1.5  1  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.26   11.7   3.5        2.7    8.4   0.5    2.6  2  BTAD         Bacterial transcriptional activator domain
        1.8    8.5   4.8       0.65    9.9   1.2    1.9  2  CHAD         CHAD domain


Domain annotation for each model (and alignments):
>> ANAPC4  Anaphase-promoting complex, cyclosome, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.1   5.5e-47   2.5e-43       6     202 ..     271     473 ..     267     475 .. 0.95

  Alignments for each domain:
  == domain 1  score: 148.0 bits;  conditional E-value: 5.5e-47
      ANAPC4   6 dlpflssskkelvelarkssqlqslleyinetlkeiseew......kealelldrklrnledelkeeg.eeeksisaeLldllltGlispalkdfLv.. 95 
                 +lp l   +++++++ar+ss  ++l++y ++++ke++++w        a+++ ++++++led +++e  ++e+ +  +L++ll+tG+ s+al d+L   
  CDO71553.1 271 KLPYL--TGRHFRDVARVSSAARELTWYSMRVVKEMRSAWfgsetnGGARDMGQKWVNALEDRQRNEFgQDEPYALLDLTCLLTTGRSSEALMDYLGsa 367
                 45555..569*********************************98666***************999989889999*********************999 PP

      ANAPC4  96 nqlgerglkkwekavesayenirklvfehllpalerlivllseLrGlakweeryeslgldeeeidelletakslllkaeellqviseelkqfkaFinWl 194
                 ++++er l+kwe+++++a++++r++ ++ + pa++rl +ll+e++G+a +++++  +++d++eid +l ++++ ++   +l  ++++el +fk+F++Wl
  CDO71553.1 368 EHMSERSLQKWETTMTEALTKLRDFSEKRVAPACQRLRLLLQEVQGWAALPQYA-VCNFDTKEIDTCLAMIARAIVSTAWLAATARKELIRFKEFMKWL 465
                 ****************************************************86.79****************************************** PP

      ANAPC4 195 kvvidrla 202
                 +++i r +
  CDO71553.1 466 RYEIARVN 473
                 ****9987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.9e-07    0.0013       2      54 ..      23      82 ..      22      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.9e-07
  ANAPC4_WD40  2 swcptmDLiAlat...edgellvfRlngqrvwtl....eedkedsevrsLaWkpdgklLa 54
                 swcp +DL+ +++   ++++l +  ++g + w++    ++d +  ++ ++aW+pd++ L 
   CDO71553.1 23 SWCPDKDLLVIVSrfaHQEKLSLWKMSGSKKWEIdlpgNQDYHVDRIVDIAWSPDERALP 82
                 8**********9733369****************99888888889999********9985 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.028   1.3e+02      94     121 ..     338     365 ..     322     381 .. 0.80
   2 ?    8.4   0.5    0.0006       2.7      25      82 ..     529     589 ..     521     595 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
                 T-HHHHHHHHHHHHHTT-HHHHHHHHHH CS
        BTAD  94 lrErlhrqlmrAlarsGrqaeALevYer 121
                  +E +  + +++l  +Gr +eAL  Y  
  CDO71553.1 338 QDEPYALLDLTCLLTTGRSSEALMDYLG 365
                 66777777799************99965 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0006
                 HHHHHHHHHTT--SSTTGGGTTSTTHHHHH..HHHHHHHHHHHHHHHH.HHHHTT-HHHHH CS
        BTAD  25 aaelleaAlalwrGpaladleagewleaer..erleelrlealealae.aelrlGraeeal 82 
                 a+++++aAl+lw+ +a +d++ ++  + er   +l +   + +++++e a  + +r +e++
  CDO71553.1 529 ALRKARAALNLWDQTAHDDVKRRDLGHIERniDALLQNLATSCQKIFEeASNAAARSAELV 589
                 8999*****************9665555542256666666666666661444444665655 PP

>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.2   0.00014      0.65      56     161 ..     278     408 ..     269     485 .. 0.74
   2 ?   -1.1   0.1      0.35   1.6e+03      31      52 ..     529     550 ..     527     590 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHHHHHHTHHHHH..........HTS-TTTCGGGHHHHHHHHHHHH.....................HHHHHHHHHHTSHH..HH CS
        CHAD  56 kelrwlaraLGeaRDldVllerllsrle.........erlpaaeqealerllkrlekerk.....................rararvlaaLdsar..yq 122
                 +++r++ar+ ++aR l  + +r+ ++++         +     +++  ++  ++le++++                     r  +++ ++L sa+   +
  CDO71553.1 278 RHFRDVARVSSAARELTWYSMRVVKEMRsawfgsetnG----GARDMGQKWVNALEDRQRnefgqdepyalldltcllttgRSSEALMDYLGSAEhmSE 372
                 689**********************999*****65552....444444555555555544456677777777777777777777787888888883333 PP

                 HHHHHHHHHHT--S--TSBHHHHHHHHHHHHHHHH.HHH CS
        CHAD 123 alldaldallaaerleaepaaaalekrlrkayrklekra 161
                 + l+++++ + ++    ++++++ ekr+++a ++l+   
  CDO71553.1 373 RSLQKWETTMTEAL---TKLRDFSEKRVAPACQRLRLLL 408
                 66666666665444...6899999999999999984433 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHTTTSS.-HHHHH CS
        CHAD  31 alRRlRsalrlfapvl.dkeeaa 52 
                 alR+ R+al l ++   d + ++
  CDO71553.1 529 ALRKARAALNLWDQTAhD-DVKR 550
                 789999999888665531.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5513.27
//
Query:       CDO71554.1  [L=129]
Description: hypothetical protein BN946_scf184911.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 987.25
//
Query:       CDO71555.1  [L=141]
Description: hypothetical protein BN946_scf184911.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1098.97
//
Query:       CDO71556.1  [L=378]
Description: hypothetical protein BN946_scf184911.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-130  435.2   0.0   9.4e-130  432.9   0.0    1.8  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.9   0.0  5.2e-134  9.4e-130       4     405 ..      11     375 ..       8     377 .. 0.99

  Alignments for each domain:
  == domain 1  score: 432.9 bits;  conditional E-value: 5.2e-134
       Actin   4 vsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.....klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdpeehpl 97 
                 ++ vV+DnGs+t++aG+ag d Pk+ +ps+vg+p++ +v+a     ++++g +a++ r+ l++++p+e+G+v+dwd++e++w+ v+ eel + +eehp+
  CDO71556.1  11 NQPVVIDNGSGTIKAGFAGQDHPKCFFPSFVGRPKHVRVMAgalegDVFIGRKAQEARGLLKIKYPMEHGIVTDWDDMERIWSWVYAEELGTLSEEHPV 109
                 789***********************************999********************************************************** PP

       Actin  98 lltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevtp 196
                 llte+plnp+++r  a++++f++f+vpaly++ +avls+++sg++tg+v+DsG++vt++vpV++G+++ +airr+d++G+++t++l+ ll++       
  CDO71556.1 110 LLTEAPLNPRHNRDVAAQVFFDTFNVPALYISVQAVLSLYSSGRTTGIVLDSGDGVTHAVPVFEGFSMPHAIRRVDVAGRDVTDHLQLLLRKA------ 202
                 ********************************************************************************************6...... PP

       Actin 197 rylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeeksssspeksYeLPDgseiklgeeRfkvpEiLFdpsligsesal 295
                                         +++++t++e+ev+++iKe++c+v+ +p+ +eek+s    +++ LPDg++++lg eRf++pEiLF+p+lig+e a 
  CDO71556.1 203 ------------------------GHHLHTTAEREVVRTIKEKCCYVALNPA-KEEKDSLGRSEEFRLPDGNTVQLGPERFRAPEILFNPELIGQEYA- 275
                 ........................99*************************9.99999999***********************************99. PP

       Actin 296 eeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEY 394
                         g+++++v++in++d dlr++L++niv++GG++l++g+ +Rl +e+++la k++k+ki+ap+ erkys+WiGGSiLA l+tf+++wvs +EY
  CDO71556.1 276 --------GVHQVVVDSINRVDLDLRKSLFSNIVLSGGSTLCRGFGDRLLNEVKKLALKDIKIKIYAPP-ERKYSTWIGGSILAGLNTFKKMWVSAEEY 365
                 ........*************************************************************.***************************** PP

       Actin 395 eEqGssvverk 405
                 +E  ++++++k
  CDO71556.1 366 QED-PDIIHKK 375
                 **9.9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2875.02
//
Query:       CDO71557.1  [L=138]
Description: hypothetical protein BN946_scf184911.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-33  112.8   0.0      1e-32  111.9   0.0    1.5  1  Ribosomal_S24e  Ribosomal protein S24e


Domain annotation for each model (and alignments):
>> Ribosomal_S24e  Ribosomal protein S24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   5.7e-37     1e-32       2      76 ..      29     103 ..      28     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 5.7e-37
                     EEEE-SSS-S--HHHHHHHHHHHHTS-CTTEEEEEEEE-SSSSEEEEEEEEES-HHHHHHHS-HHHHHHTTSS-- CS
  Ribosomal_S24e   2 vdvlHpgkatpskteireklakmykvdpdlvvvfgfrthfGggkttGfakiYdsleaakkfEpkhrlaRnglaek 76 
                     vdvlHp+++++sk+e+ e+la++yk+d++ vv fg+rt fGgg++tGf++iYd++++ kkfEpkhrl+R glae+
      CDO71557.1  29 VDVLHPNRPNVSKAELSERLAAIYKTDKERVVTFGLRTIFGGGRSTGFGLIYDDEASQKKFEPKHRLIRSGLAEA 103
                     8************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1028.65
//
Query:       CDO71558.1  [L=192]
Description: hypothetical protein BN946_scf184911.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   1.9       0.16   12.1   1.9    1.2  1  DUF4870   Domain of unknown function (DUF4870)


Domain annotation for each model (and alignments):
>> DUF4870  Domain of unknown function (DUF4870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.9   8.8e-06      0.16      17     105 ..      93     180 ..      83     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.8e-06
     DUF4870  17 liplgniilPlviwllkkdksefvdeqgkealNFqislliysiilivlsllvligflllllllllllnlvlviiaaikanegee..yrypl 105
                 ++ l++ i +l i++++  +  fv+ ++ ++   +  l+++ i++ +l++  ++    ll+lll++ +l++   a + a+++    +++p+
  CDO71558.1  93 FAYLLGPISALFILIFETHN-DFVRFHAYQSALLTTPLVVLRILASLLQFPPFLRT--LLTLLLVIPSLYMAWQAFVDASRNGLvrFQIPF 180
                 44556667777777777766.9**************************9*****99..9********************887662344455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1380.48
//
Query:       CDO71559.1  [L=264]
Description: hypothetical protein BN946_scf184911.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1916.96
//
Query:       CDO71560.1  [L=421]
Description: hypothetical protein BN946_scf184911.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2756.63
//
Query:       CDO71561.1  [L=608]
Description: hypothetical protein BN946_scf184911.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-41  135.2  18.3     0.0019   18.3   0.0   12.7 14  HEAT           HEAT repeat
    1.5e-35  121.4  13.7    2.5e-12   47.0   0.0    6.9  6  HEAT_2         HEAT repeats
    4.1e-14   53.0   1.5    3.3e-05   24.4   0.1    6.7  9  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    2.9e-13   50.2   4.2    0.00085   19.4   0.1    5.2  5  Cnd1           non-SMC mitotic condensation complex subunit 1
    2.6e-12   47.0   6.8      0.021   15.3   0.0    8.6 10  HEAT_EZ        HEAT-like repeat
    7.2e-11   41.3   2.5    6.1e-07   28.4   0.8    3.9  3  Adaptin_N      Adaptin N terminal region
    5.8e-07   29.8   0.1      0.018   15.4   0.0    4.2  4  TAF6_C         TAF6 C-terminal HEAT repeat domain
    3.7e-05   23.4   1.0       0.32   10.5   0.1    4.6  5  CLASP_N        CLASP N terminal
    5.3e-05   23.1   6.9        3.5    7.8   0.0    6.7  7  Arm            Armadillo/beta-catenin-like repeat
      0.003   17.1   0.1     0.0069   16.0   0.1    1.5  1  Peripla_BP_2   Periplasmic binding protein
  ------ inclusion threshold ------
      0.014   14.6   4.2       0.32   10.1   0.1    3.9  5  IFRD           Interferon-related developmental regulator (IF
      0.036   12.8   7.6        1.9    7.0   0.0    4.4  4  Ecm29          Proteasome stabiliser
      0.045   14.4   5.1         11    7.0   0.3    5.6  5  HEAT_PBS       PBS lyase HEAT-like repeat
       0.12   12.4   0.4       0.88    9.6   0.1    2.4  3  DUF1357        Protein of unknown function (DUF1357)
       0.32   11.3   2.3    1.7e+02    2.7   0.2    4.5  4  Cohesin_HEAT   HEAT repeat associated with sister chromatid c


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.2   3.8e+03       9      28 ..      20      39 ..      14      41 .. 0.80
   2 ?   -0.1   0.0       1.3   1.6e+03       1      19 [.      51      68 ..      51      75 .. 0.67
   3 ?   -1.3   0.0       3.2   3.8e+03       3      18 ..     146     161 ..     145     165 .. 0.69
   4 !   13.3   0.0   6.2e-05     0.074       5      30 ..     186     211 ..     182     212 .. 0.86
   5 ?   -2.2   0.0       6.1   7.3e+03      10      29 ..     230     249 ..     226     251 .. 0.72
   6 !   18.3   0.0   1.6e-06    0.0019       1      30 [.     260     289 ..     260     290 .. 0.91
   7 !   11.5   0.0   0.00024      0.28       1      21 [.     299     319 ..     299     329 .. 0.87
   8 !   10.7   0.2   0.00044      0.53       1      29 [.     338     366 ..     338     368 .. 0.92
   9 !   15.9   0.0   9.6e-06     0.011       1      25 [.     377     401 ..     377     406 .. 0.89
  10 !   17.2   0.1   3.6e-06    0.0043       1      28 [.     416     443 ..     416     446 .. 0.87
  11 !   12.9   0.0   8.9e-05      0.11       3      30 ..     457     484 ..     455     485 .. 0.91
  12 !    7.1   0.0    0.0065       7.8       1      30 [.     494     523 ..     494     524 .. 0.92
  13 !   15.6   0.0   1.2e-05     0.014       1      29 [.     533     561 ..     533     563 .. 0.94
  14 !   11.4   0.0   0.00027      0.32       1      25 [.     577     601 ..     577     602 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.2
                HT-SSHHHHHHHHHHHHHHH CS
        HEAT  9 lsDpspeVReaAakaLgala 28
                l++++ + R +A+  + ++a
  CDO71561.1 20 LRSEDVQLRLNAIHRISTIA 39
                78999999****98888776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
                HHHHHHHHHT-SSHHHHHH CS
        HEAT  1 llPlllkllsDpspeVRea 19
                l+P+l+    D++ eV  a
  CDO71561.1 51 LIPFLQDSV-DDEDEVLLA 68
                799999986.555555555 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.2
                 HHHHHHHT-SSHHH.HH CS
        HEAT   3 PlllkllsDpspeV.Re 18 
                 Pll++ ls+ +++  R 
  CDO71561.1 146 PLLQR-LSHGEWFTsRT 161
                 77777.79999986455 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 6.2e-05
                 HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   5 llkllsDpspeVReaAakaLgalaev 30 
                 +  l sD+ p VR+aAak L+ l+++
  CDO71561.1 186 FAALVSDDTPMVRRAAAKWLAPLVKK 211
                 56677***************999875 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 6.1
                 T-SSHHHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgalae 29 
                  D+  +VR  +++ L a+a+
  CDO71561.1 230 ADDQDSVRLLTVEDLIAIAQ 249
                 58889999988876666665 PP

  == domain 6  score: 18.3 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ll  + + ++D+s++VR++Aa  + +laev
  CDO71561.1 260 LLKQIRQTMTDKSWRVRYMAASHFNELAEV 289
                 677888999*******************98 PP

  == domain 7  score: 11.5 bits;  conditional E-value: 0.00024
                 HHHHHHHHHT-SSHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAa 21 
                 l+ ++++ll+D+++eVR aA 
  CDO71561.1 299 LISHFVQLLKDNEAEVRTAAS 319
                 7899***************96 PP

  == domain 8  score: 10.7 bits;  conditional E-value: 0.00044
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++P++  l++D s +VR+a a  +  la+
  CDO71561.1 338 IVPCVRDLCQDVSQHVRAALASQISGLAP 366
                 79*******************99999886 PP

  == domain 9  score: 15.9 bits;  conditional E-value: 9.6e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLg 25 
                 llPl+l+ll+D+ peVR + +  L 
  CDO71561.1 377 LLPLFLHLLKDEFPEVRLNIISKLE 401
                 89****************9887765 PP

  == domain 10  score: 17.2 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 llP++++l +D+s++VR+a ++ +  la
  CDO71561.1 416 LLPAIVELAEDKSWRVRQAIIEYIPLLA 443
                 89*****************998776555 PP

  == domain 11  score: 12.9 bits;  conditional E-value: 8.9e-05
                 HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalaev 30 
                 +l++++l D+  ++ReaAa +L +l ev
  CDO71561.1 457 NLCMSWLGDSVYSIREAAAVNLKKLTEV 484
                 57899*******************9997 PP

  == domain 12  score: 7.1 bits;  conditional E-value: 0.0065
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++P ++ + ++p+   R+++++a+ ++++ 
  CDO71561.1 494 IVPKVVGMGQHPNYLYRMTTVQAIMTISPS 523
                 78999**99*****************9875 PP

  == domain 13  score: 15.6 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +l +ll+l  Dp p++R ++akaL ++a 
  CDO71561.1 533 ILEMLLQLAGDPIPNIRFNVAKALETIAT 561
                 7999**********************996 PP

  == domain 14  score: 11.4 bits;  conditional E-value: 0.00027
                 HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLg 25 
                 ++P+l  l +D++++VR  A +aL 
  CDO71561.1 577 IVPVLEALKNDQDADVRFFASRALQ 601
                 689988888*************995 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.1e-05     0.013       4      57 ..      16      75 ..      13     107 .. 0.79
   2 !    8.4   0.1    0.0023       2.8      32      56 ..     182     206 ..     146     224 .. 0.71
   3 !   21.1   0.8   2.5e-07    0.0003       7      83 ..     227     318 ..     222     323 .. 0.79
   4 !   15.2   0.1   1.7e-05     0.021       2      71 ..     301     381 ..     300     383 .. 0.81
   5 !   47.0   0.0   2.1e-15   2.5e-12       1      88 []     378     479 ..     378     479 .. 0.90
   6 !   26.0   0.0   7.8e-09   9.3e-06      11      87 ..     504     600 ..     497     601 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      HEAT_2  4 LlqalendpdpevrraairaLg....rignpealpaLvelled...edpavRraaaeaLga 57
                L+  l +++d ++r +ai+ +      +g+++a++ L+++l+d   ++ +v  a ae Lg+
  CDO71561.1 16 LMDEL-RSEDVQLRLNAIHRIStialALGPDRARDELIPFLQDsvdDEDEVLLALAEELGR 75
                78889.9***************7766668889999999999775524478******99995 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
      HEAT_2  32 alpaLvellededpavRraaaeaLg 56 
                 +++ +  l++d+ p+vRraaa+ L+
  CDO71561.1 182 LRRGFAALVSDDTPMVRRAAAKWLA 206
                 4444556669999999999999776 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 2.5e-07
      HEAT_2   7 alendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaig........dpealpaLkellddddddvvReaA 83 
                  l+ d  + vr  +++ L  i+ +        ++l+ +++ ++d++++vR++aa    +++        ++e +++  +ll+ d++++vR+aA
  CDO71561.1 227 KLQADDQDSVRLLTVEDLIAIAQQlspaevkeQLLKQIRQTMTDKSWRVRYMAASHFNELAevvgqelvREELISHFVQLLK-DNEAEVRTAA 318
                 6888999999999999999666555557777788********************755555322235555699*******996.7999999987 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 1.7e-05
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgai....gdpealpaLkell 71 
                 ++++q+l +d + evr aa  ++  +           +++p++++l++d + +vR+a a  ++ +    g ++++++L+ l+
  CDO71561.1 301 SHFVQLL-KDNEAEVRTAASGQIPGFSKLlekevvlaRIVPCVRDLCQDVSQHVRAALASQISGLapllGKEATIEHLLPLF 381
                 6789999.9***************554433445777788********************99985533337899999998775 PP

  == domain 5  score: 47.0 bits;  conditional E-value: 2.1e-15
      HEAT_2   1 ldaLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaL....gaigd...pealpaLkellddddddvvReaAa 84 
                 l+++l +l +d++pevr ++i  L         ++ ++++lpa+vel+ed++++vR+a++e++     ++g    +e+l  L+++++ d+++ +ReaAa
  CDO71561.1 378 LPLFLHLL-KDEFPEVRLNIISKLEqvnavigiELLSESLLPAIVELAEDKSWRVRQAIIEYIpllaTQLGKaffDESLGNLCMSWLGDSVYSIREAAA 475
                 57899999.9***************8888887777888***********************9966655778678899*********************9 PP

      HEAT_2  85 eaLa 88 
                  +L+
  CDO71561.1 476 VNLK 479
                 9885 PP

  == domain 6  score: 26.0 bits;  conditional E-value: 7.8e-09
      HEAT_2  11 dpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgai....g.......d.pealpaLkellddddddvvReaAaeaL 87 
                 +p++  r ++++a+ +i +         e+l++L++l+ d+ p++R ++a+aL  i    g       + ++ +   +e+l++d+d++vR  A +aL
  CDO71561.1 504 HPNYLYRMTTVQAIMTISPSltldivrgEILEMLLQLAGDPIPNIRFNVAKALETIatsfGdtpdgqqLvQQKIVPVLEALKNDQDADVRFFASRAL 600
                 677777777777777665555555666699***********************87744443433333314445555555699********9888877 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.3   5.2e+03      14      41 ..      37      64 ..      27      71 .. 0.74
   2 ?   -0.3   0.0       1.4   1.6e+03      35      85 ..     189     237 ..     173     244 .. 0.66
   3 !   24.4   0.1   2.8e-08   3.3e-05      13      89 ..     245     319 ..     236     322 .. 0.89
   4 !   10.2   0.1   0.00073      0.87      25      87 ..     296     356 ..     293     364 .. 0.92
   5 ?    0.6   0.0      0.75   8.9e+02      25      44 ..     335     354 ..     326     393 .. 0.67
   6 ?    3.7   0.0      0.08        95      25      87 ..     374     434 ..     355     442 .. 0.62
   7 ?    5.0   0.0      0.03        36      23      89 ..     411     475 ..     399     483 .. 0.75
   8 ?    2.7   0.0      0.16   1.9e+02      22      86 ..     488     550 ..     465     560 .. 0.63
   9 !   11.3   0.0   0.00034      0.41       9      51 ..     555     600 ..     547     604 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.3
  Vac14_Fab1_bd 14 aialekkikeyleeivkpvlkcfsDkds 41
                   +ial+   ++  +e+++ + ++++D+d+
     CDO71561.1 37 TIALALGPDRARDELIPFLQDSVDDEDE 64
                   4555555677889999999999999986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
  Vac14_Fab1_bd  35 cfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvk 85 
                     +sD+   vR  a+  l  ++k+  ++   +l++ + +  kl aD + sv+
     CDO71561.1 189 LVSDDTPMVRRAAAKWLAPLVKKFTKQH--VLTDGLAMYRKLQADDQDSVR 237
                    4566666666666666666655544442..244555666677777777776 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 2.8e-08
  Vac14_Fab1_bd  13 vaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                    +aia + + +e+ e+++k + ++++Dk+ rvRy a+  +  +a v+ +e+++  +e+ + +v+l+ D++++v+++a+
     CDO71561.1 245 IAIAQQLSPAEVKEQLLKQIRQTMTDKSWRVRYMAASHFNELAEVVGQELVR--EELISHFVQLLKDNEAEVRTAAS 319
                    3444444478899************************************998..7999****************985 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00073
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksg 87 
                     ee+++  ++ ++D++++vR  a+  +   +k +++ev+  l +i  ++  l+ D+ ++v+ +
     CDO71561.1 296 REELISHFVQLLKDNEAEVRTAASGQIPGFSKLLEKEVV--LARIVPCVRDLCQDVSQHVRAA 356
                    6899********************************996..889*****************87 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.75
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvR 44 
                    l +iv+ v + ++D +++vR
     CDO71561.1 335 LARIVPCVRDLCQDVSQHVR 354
                    44555555555555555555 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.08
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksg 87 
                    +e++++  l+ ++D+  +vR   +  l  +  v+  e+l+  ++++ a+v+l+ D+   v+++
     CDO71561.1 374 IEHLLPLFLHLLKDEFPEVRLNIISKLEQVNAVIGIELLS--ESLLPAIVELAEDKSWRVRQA 434
                    5666666666666666666666666666666666555554..455555555555555555554 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.03
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                       e++++ +++  +Dk+ rvR   +E++  +a ++ ++++   +++ +  ++ + Ds  s++++a+
     CDO71561.1 411 LLSESLLPAIVELAEDKSWRVRQAIIEYIPLLATQLGKAFFD--ESLGNLCMSWLGDSVYSIREAAA 475
                    567899*********************998888888777654..23444445566777777777765 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.16
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvks 86 
                    +   e+iv+ v+ + +  +   R +++ ++  i+  +  ++++   ei+++l +l+ D  ++++ 
     CDO71561.1 488 EWAKEQIVPKVVGMGQHPNYLYRMTTVQAIMTISPSLTLDIVR--GEILEMLLQLAGDPIPNIRF 550
                    5556667777777777777766666666666665555555544..47777777777777777763 PP

  == domain 9  score: 11.3 bits;  conditional E-value: 0.00034
  Vac14_Fab1_bd   9 gLaavaialekk..ikeyleeivkpvlkcf.sDkdsrvRyyacEsl 51 
                    +L ++a + + +   ++ +++ + pvl+++ +D+d+ vR++a+ +l
     CDO71561.1 555 ALETIATSFGDTpdGQQLVQQKIVPVLEALkNDQDADVRFFASRAL 600
                    66677777777666677777777788887736**********9887 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1     0.001       1.2      27      88 ..     187     250 ..     175     257 .. 0.81
   2 !   19.4   0.1   7.1e-07   0.00085      17      78 ..     255     318 ..     244     332 .. 0.87
   3 !   14.8   0.1   1.9e-05     0.023      21     128 ..     337     440 ..     326     445 .. 0.80
   4 ?   -2.2   0.0       3.1   3.7e+03      30      49 ..     463     482 ..     449     497 .. 0.78
   5 ?    4.2   0.0     0.035        41      38      89 ..     510     565 ..     492     603 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.001
        Cnd1  27 rkrLkDedpyVRktaaivvakL...ilndmvkekgflselaklleDenprVvanalaalteisek 88 
                  + ++D+ p+VR+ aa  +a L   ++++ v   g l++ +kl  D++++V+ +++  l  i+++
  CDO71561.1 187 AALVSDDTPMVRRAAAKWLAPLvkkFTKQHVLTDG-LAMYRKLQADDQDSVRLLTVEDLIAIAQQ 250
                 56789*****************8888888888888.77888888999999998888777777765 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 7.1e-07
        Cnd1  17 nlveylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekgflselaklleDenprVvana 78 
                 ++ e+l++++r++++D++  VR  aa  + +L   + +++v  ++++s++ +ll+D++++V++ a
  CDO71561.1 255 EVKEQLLKQIRQTMTDKSWRVRYMAASHFNELaevVGQELV-REELISHFVQLLKDNEAEVRTAA 318
                 56799***************************995555555.5678***************9877 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.9e-05
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgq 116
                  +v+ +r  ++D +++VR   a  ++ L  +l +    + +l  +++ll+De p+V+ n ++ l++++   +    ++ll++   +l+ a+ e+ e++ 
  CDO71561.1 337 RIVPCVRDLCQDVSQHVRAALASQISGLapLLGKEATIEHLLPLFLHLLKDEFPEVRLNIISKLEQVNAViG----IELLSE---SLLPAIVELAEDKS 428
                 667788999*********************9999999999************************99999843....222222...22224446777778 PP

        Cnd1 117 itilefLlsyip 128
                   + +++++yip
  CDO71561.1 429 WRVRQAIIEYIP 440
                 888888887776 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.1
        Cnd1  30 LkDedpyVRktaaivvakLi 49 
                 L D+   +R+ aa+ + kL 
  CDO71561.1 463 LGDSVYSIREAAAVNLKKLT 482
                 78999999999999999995 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.035
        Cnd1  38 RktaaivvakL.ilndmvkekg.flselaklleDenprVvanalaalteisek..s 89 
                 R+t++ ++  +  + ++ +++g +l++l++l  D+ p+++ n+  al+ i++   +
  CDO71561.1 510 RMTTVQAIMTIsPSLTLDIVRGeILEMLLQLAGDPIPNIRFNVAKALETIATSfgD 565
                 66666666666533344456675888888888****************99998752 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.9   2.3e+03      27      44 ..      49      65 ..      35      70 .. 0.59
   2 ?    5.7   0.1     0.018        21      32      49 ..     185     202 ..     174     206 .. 0.85
   3 ?   -1.1   0.0       2.4   2.9e+03      38      52 ..     230     244 ..     221     247 .. 0.79
   4 ?    2.4   0.0       0.2   2.4e+02      26      52 ..     257     283 ..     248     286 .. 0.81
   5 !   15.3   0.0   1.8e-05     0.021       1      49 [.     273     319 ..     273     320 .. 0.72
   6 ?   -1.0   0.0       2.3   2.7e+03      26      47 ..     335     356 ..     332     359 .. 0.84
   7 ?    3.1   0.1      0.12   1.4e+02      10      46 ..     356     394 ..     350     402 .. 0.81
   8 ?    1.1   0.0       0.5   5.9e+02      23      47 ..     410     434 ..     394     437 .. 0.80
   9 ?   -1.5   0.0       3.3   3.9e+03      26      52 ..     491     517 ..     486     517 .. 0.84
  10 !   13.1   0.0   8.9e-05      0.11       1      52 [.     546     600 ..     546     602 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
     HEAT_EZ 27 peilpaLlalLnddsdeV 44
                +e++p+L      d+deV
  CDO71561.1 49 DELIPFLQDSVD-DEDEV 65
                456666653332.45555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.018
     HEAT_EZ  32 aLlalLnddsdeVRaaAa 49 
                  ++al +dd ++VR aAa
  CDO71561.1 185 GFAALVSDDTPMVRRAAA 202
                 578899*******99997 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.4
     HEAT_EZ  38 nddsdeVRaaAagaL 52 
                  dd+d+VR  ++  L
  CDO71561.1 230 ADDQDSVRLLTVEDL 244
                 58999***9998665 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.2
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaL 52 
                  +++l++  ++++d+s +VR+ Aa ++
  CDO71561.1 257 KEQLLKQIRQTMTDKSWRVRYMAASHF 283
                 57899999999998888******9887 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 1.8e-05
     HEAT_EZ   1 wrvRraAawaLGr..laggepellqplvpeilpaLlalLnddsdeVRaaAa 49 
                 wrvR  Aa+ + +  +++++   ++++ +e++  +++lL+d ++eVR+aA 
  CDO71561.1 273 WRVRYMAASHF-NelAEVVG---QELVREELISHFVQLLKDNEAEVRTAAS 319
                 56666666666.44333333...455569********************96 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 2.3
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaa 47 
                 + +i+p+   l +d s++VRaa
  CDO71561.1 335 LARIVPCVRDLCQDVSQHVRAA 356
                 5689999999999999999987 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.12
     HEAT_EZ  10 aLGr.laggepellqp.lvpeilpaLlalLnddsdeVRa 46 
                 aL++ + g +p l +   ++ +lp++l lL+d+ +eVR 
  CDO71561.1 356 ALASqISGLAPLLGKEaTIEHLLPLFLHLLKDEFPEVRL 394
                 666666677777766678899****************96 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.5
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaa 47 
                 ++l + +lpa + l +d+s +VR+a
  CDO71561.1 410 ELLSESLLPAIVELAEDKSWRVRQA 434
                 5677899********9998899987 PP

  == domain 9  score: -1.5 bits;  conditional E-value: 3.3
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaL 52 
                  ++i+p  + + ++++ + R +++ a+
  CDO71561.1 491 KEQIVPKVVGMGQHPNYLYRMTTVQAI 517
                 5799****9999999988899998886 PP

  == domain 10  score: 13.1 bits;  conditional E-value: 8.9e-05
     HEAT_EZ   1 wrvRraAawaLGr..lagg.epellqplvpeilpaLlalLnddsd.eVRaaAagaL 52 
                 +++R+++a aL +    +g  p+ +q+++++i+p L  +L++d+d +VR  A +aL
  CDO71561.1 546 PNIRFNVAKALETiaTSFGdTPDGQQLVQQKIVPVLE-ALKNDQDaDVRFFASRAL 600
                 567888888884444333303444888**********.66666666**98777777 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.28   3.3e+02     120     166 ..      17      64 ..       9      79 .. 0.76
   2 !    6.0   0.0     0.003       3.6     108     148 ..     175     215 ..     172     248 .. 0.80
   3 !   28.4   0.8   5.1e-10   6.1e-07     108     321 ..     253     593 ..     223     601 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.28
                 HHHHT-SSHHHHHHHHHHHHHCCCC.CHHCCCCCHHHHHHHCTT-SSH CS
   Adaptin_N 120 kkllkdrspyvrkkAalailklykk.dpdllrkqlveeikellsdkdp 166
                 ++ l++++ ++r +A++ i ++  +  pd  r++l++ ++++++d+d 
  CDO71561.1  17 MDELRSEDVQLRLNAIHRISTIALAlGPDRARDELIPFLQDSVDDEDE 64 
                 455677777888888888888865548888877788888888888774 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.003
                 -CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHC CS
   Adaptin_N 108 vpelaedlapaikkllkdrspyvrkkAalailklykkdpdl 148
                 +p++ +dl +   +l++d++p+vr++Aa  ++ l+kk  ++
  CDO71561.1 175 SPSIQDDLRRGFAALVSDDTPMVRRAAAKWLAPLVKKFTKQ 215
                 6889999999999*********************9995544 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 5.1e-10
                 -CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCC.CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC.HHHHHHHCCHHHHHHC CS
   Adaptin_N 108 vpelaedlapaikkllkdrspyvrkkAalailklykk.dpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlll.kllpklvrrLcnllte 203
                  +e+ e+l+++i+++++d+s  vr  Aa  +  l ++  ++l+r++l++++++ll+d++  v +aA   +    k  +++ +   +   vr Lc   ++
  CDO71561.1 253 PAEVKEQLLKQIRQTMTDKSWRVRYMAASHFNELAEVvGQELVREELISHFVQLLKDNEAEVRTAASGQIPGFsKLLEKEVVlARIVPCVRDLC---QD 348
                 568889******************************9456677666********************7777666544555544444444678888...88 PP

                 S-HHHHHHHHHHHCC---SSHHHH........................................................................... CS
   Adaptin_N 204 ldpwlqvkiiklltrlarqepeer........................................................................... 227
                 ++++  + + + ++ la+   +e+                                                                           
  CDO71561.1 349 VSQHVRAALASQISGLAPLLGKEAtiehllplflhllkdefpevrlniiskleqvnavigiellsesllpaivelaedkswrvrqaiieyipllatqlg 447
                 9999999988888888888888888888999999999999999999999999999999999999999999999999*********************** PP

                 ............................................HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST...HHHCCHHCHHHHHHSSCC CS
   Adaptin_N 228 ..........................................skkellesllnllqssnnaVlletvnlivelapkne...livlavnaLvrllsskde 281
                                                           +k+++++++    q+ n    + tv++i++++p+ +   ++  + + L +l  ++ +
  CDO71561.1 448 kaffdeslgnlcmswlgdsvysireaaavnlkkltevfgvewAKEQIVPKVVGMGQHPNYLYRMTTVQAIMTISPSLTldiVRGEILEMLLQLAGDPIP 546
                 ******************************9999998888876689********************************99999**************** PP

                 TCHHHHHCHHHHHHHHX......XTTTT.TTTCCCCSXXTTSXHHHH CS
   Adaptin_N 282 nlryvaLrtllkivkke......pkavq.hldlkifllktdddvsir 321
                 n+r+ + ++l +i+++       ++ vq +    ++ lk+d+d ++r
  CDO71561.1 547 NIRFNVAKALETIATSFgdtpdgQQLVQqKIVPVLEALKNDQDADVR 593
                 ****************4445556899*999999***********998 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.012        14      16      40 ..     191     215 ..     157     236 .. 0.88
   2 !   15.4   0.0   1.5e-05     0.018       9      88 ..     263     341 ..     244     343 .. 0.84
   3 ?    3.0   0.0      0.11   1.3e+02      16      38 ..     464     486 ..     440     501 .. 0.74
   4 ?   -2.2   0.0       4.7   5.6e+03      47      47 ..     576     576 ..     547     602 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.012
      TAF6_C  16 ledhwaLRdfAAslLakilkkysss 40 
                 ++d+  +R+ AA+ La ++kk++++
  CDO71561.1 191 SDDTPMVRRAAAKWLAPLVKKFTKQ 215
                 5777889***************987 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.5e-05
      TAF6_C   9 klgakseledhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgt.lyGallglaal.Geeavrklvlpn 88 
                 ++  +  +++ w++R +AAs  +++++  +++   +++++++ + + l d++ ++ t + G + g+++l ++e+v + ++p 
  CDO71561.1 263 QI-RQTMTDKSWRVRYMAASHFNELAEVVGQE--LVREELISHFVQLLKDNEAEVRTaASGQIPGFSKLlEKEVVLARIVPC 341
                 44.33678888*******************98..9***************9776665389*********99***99988885 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
      TAF6_C  16 ledhwaLRdfAAslLakilkkys 38 
                  +  +++R+ AA  L+k+ + ++
  CDO71561.1 464 GDSVYSIREAAAVNLKKLTEVFG 486
                 344599************99886 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.7
      TAF6_C  47 r 47 
                 +
  CDO71561.1 576 K 576
                 3 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.032        38      90     168 ..     138     218 ..     120     238 .. 0.68
   2 !   10.5   0.1   0.00027      0.32     117     196 ..     246     318 ..     242     328 .. 0.88
   3 ?   -0.5   0.0      0.63   7.5e+02     168     195 ..     329     356 ..     323     396 .. 0.74
   4 ?    2.3   0.0     0.085     1e+02     129     196 ..     414     474 ..     371     488 .. 0.66
   5 ?    0.2   0.0      0.37   4.5e+02     115     193 ..     514     593 ..     487     601 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.032
     CLASP_N  90 pmveillptLlkllgdtKkiisqnanqalaa.llsnas..fsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskl 168
                 +++e+++  Ll++l+     +s +++ al a ++ ++s  ++ ++ +   ++++d ++  R  +a+wL+ l+++f+ +++ l
  CDO71561.1 138 QQIEQYYIPLLQRLSHGEWFTSRTSSCALYApVYDKVSpsIQDDLRRGFAALVSDDTPMVRRAAAKWLAPLVKKFT-KQHVL 218
                 457777777777777777777777776664436666664345556666777889999999**************99.33322 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00027
     CLASP_N 117 alaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                 a+a+ ls a++++++l+ + + ++dK+ + R ++a + + l +  +       ++l+ +++   ++++l+D + +VR +a
  CDO71561.1 246 AIAQQLSPAEVKEQLLKQIRQTMTDKSWRVRYMAASHFNELAEVVG-------QELVREELISHFVQLLKDNEAEVRTAA 318
                 5666677888999*******************************99.......55555778899*************987 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.63
     CLASP_N 168 leasllldliekslkkgleDanptVRet 195
                 le++ +l  i+++++ + +D +  VR +
  CDO71561.1 329 LEKEVVLARIVPCVRDLCQDVSQHVRAA 356
                 5666666777777777777777777754 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.085
     CLASP_N 129 prilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                 + +l  +  +++dK+ + R+  ++++ +l t+ +  k+ +++sl      ++ ++ l D+  ++Re+a
  CDO71561.1 414 ESLLPAIVELAEDKSWRVRQAIIEYIPLLATQLG--KAFFDESL-----GNLCMSWLGDSVYSIREAA 474
                 4456677778889999999999999999988888..44444444.....4455666677777777766 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.37
     CLASP_N 115 nqalaallsnas...fsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVR 193
                  qa+ ++  +++   +  +il +l +++ d  +++R  +a+ L+++ t+f+++      +l+ + i+++l ++ +D +  VR
  CDO71561.1 514 VQAIMTISPSLTldiVRGEILEMLLQLAGDPIPNIRFNVAKALETIATSFGDTPDGQ--QLVQQKIVPVLEALKNDQDADVR 593
                 555555555554333345666666777777778888888888888888888332222..23337788888888888888888 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2   1.4e+03      15      32 ..      14      31 ..      13      32 .. 0.88
   2 !    7.8   0.0    0.0029       3.5       7      32 ..     293     318 ..     292     320 .. 0.88
   3 ?   -2.9   0.1       7.1   8.5e+03      12      29 ..     337     354 ..     332     359 .. 0.73
   4 ?    5.8   0.0     0.012        15       7      32 ..     372     396 ..     369     398 .. 0.83
   5 ?   -0.4   0.0       1.2   1.4e+03       5      21 ..     432     446 ..     430     452 .. 0.85
   6 ?    3.9   0.0     0.051        61      13      40 ..     533     560 ..     523     561 .. 0.88
   7 ?    1.3   0.0      0.32   3.8e+02       6      32 ..     570     596 ..     570     601 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
                HHHHHHTTTSSHHHHHHH CS
         Arm 15 ppLvrLLssedeevqeeA 32
                 +L++ L+sed++++ +A
  CDO71561.1 14 AILMDELRSEDVQLRLNA 31
                579999*******99998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0029
                 HHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm   7 avieaGavppLvrLLssedeevqeeA 32 
                 ++++   + ++v+LL++   ev+++A
  CDO71561.1 293 ELVREELISHFVQLLKDNEAEVRTAA 318
                 6788889****************998 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.1
                 THHHHHHHHTTTSSHHHH CS
         Arm  12 GavppLvrLLssedeevq 29 
                  +vp   +L ++ ++ v+
  CDO71561.1 337 RIVPCVRDLCQDVSQHVR 354
                 578999999997766665 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.012
                 HHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm   7 avieaGavppLvrLLssedeevqeeA 32 
                 a ie+  +p +++LL++e +ev+ ++
  CDO71561.1 372 ATIEH-LLPLFLHLLKDEFPEVRLNI 396
                 55666.89**************9875 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.2
                 HHHHHHTTHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLL 21 
                 ++a+ie+  +p L + L
  CDO71561.1 432 RQAIIEY--IPLLATQL 446
                 89*****..**998877 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.051
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 +++ L++L  ++ +++++++a AL  +a
  CDO71561.1 533 ILEMLLQLAGDPIPNIRFNVAKALETIA 560
                 7899*******************97665 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.32
                 HHHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeA 32 
                 ++++++ +vp+L +L +++d +v++ A
  CDO71561.1 570 QQLVQQKIVPVLEALKNDQDADVRFFA 596
                 6899********999888888887655 PP

>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.8e-06    0.0069      61     163 ..     243     345 ..     243     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.8e-06
                   SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TT CS
  Peripla_BP_2  61 Dlvilskglgltdedeellksgiptvivessntgeslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsn 157
                   Dl+   ++l++++  e+llk++ +t+++ s+ + +     + +l+e++g+e   e+l++++ + l + ++ ++++    ++ f++  e+++v+a   
    CDO71561.1 243 DLIAIAQQLSPAEVKEQLLKQIRQTMTDKSWRVRYMAASHFNELAEVVGQELVREELISHFVQLLKDNEAEVRTAASGQIPGFSKLLEKEVVLARIV 339
                   7788888889************************999999999999999999999999999999999999999988888999999888888888766 PP

                   STTTHH CS
  Peripla_BP_2 158 syigdl 163
                   + ++dl
    CDO71561.1 340 PCVRDL 345
                   666665 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7     2e+03     226     242 ..      15      31 ..       7      64 .. 0.62
   2 ?   -1.0   0.1      0.61   7.3e+02      74     137 ..     212     272 ..     199     282 .. 0.61
   3 ?   10.1   0.1   0.00027      0.32     211     245 ..     285     321 ..     277     323 .. 0.81
   4 ?    2.9   0.0     0.042        50     117     207 ..     330     421 ..     325     478 .. 0.71
   5 ?   -3.4   0.0       3.4   4.1e+03     112     238 ..     563     592 ..     553     600 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
        IFRD 226 alvelLdssdvevriAA 242
                  l++ L s+dv++r+ A
  CDO71561.1  15 ILMDELRSEDVQLRLNA 31 
                 55666666666666554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.61
        IFRD  74 fveerlatlldalekslkkgkse.EqalAlkalallcitlgagdeseeileelkpvLkriikdss 137
                 f ++++ t   a+++ l+ + ++  ++l+++ l +++ +l + + +e++l++    ++++++d+s
  CDO71561.1 212 FTKQHVLTDGLAMYRKLQADDQDsVRLLTVEDLIAIAQQLSPAEVKEQLLKQ----IRQTMTDKS 272
                 5555566666666666666666666666666666666665555444444444....555555544 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00027
        IFRD 211 klnkkleedl..eealealvelLdssdvevriAAGea 245
                 +l++++ ++l  ee+++++v+lL++++ evr+AA+  
  CDO71561.1 285 ELAEVVGQELvrEELISHFVQLLKDNEAEVRTAASGQ 321
                 555566666688999*******************865 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.042
        IFRD 117 eseeileelkpvLkriikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqsieaadsas.ka...lvtaalsawglLltll 207
                 e+e +l +++p ++ +++d s    ++aa+++ ++ l+ + g++ + ie l+ ++l++++ ++ ++  +  ++ ++   ++   l + +lL  ++
  CDO71561.1 330 EKEVVLARIVPCVRDLCQDVS--QHVRAALASQISGLAPLLGKE-ATIEHLLPLFLHLLKDEFPEVRLNIISKlEQvnaVIGIELLSESLLPAIV 421
                 567788888999999999877..889999999999888888777.88999999999988888777665555554435555555555555555555 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.4
        IFRD 112 lgagdesee.ileelkpvLkriikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqsieaadsaskalvtaalsawglLltllps 209
                 +g   + ++ + ++++pvL+++ +d+++                                                                       
  CDO71561.1 563 FGDTPDGQQlVQQKIVPVLEALKNDQDA----------------------------------------------------------------------- 590
                 4444444443444555555555555553....................................................................... PP

        IFRD 210 sklnkkleedleealealvelLdssdvev 238
                                            +v
  CDO71561.1 591 ---------------------------DV 592
                 ...........................33 PP

>> Ecm29  Proteasome stabiliser
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.11   1.3e+02     402     460 ..       5      60 ..       1      73 [. 0.82
   2 ?    1.7   0.4     0.069        83     413     482 ..     224     286 ..     191     289 .. 0.82
   3 ?    3.4   0.3     0.021        25      18      55 ..     371     408 ..     370     440 .. 0.91
   4 ?    7.0   0.0    0.0016       1.9     410     481 ..     534     602 ..     516     607 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
       Ecm29 402 lvredlsliefLFdsLeeeesevrvsIqeALssllsafkeleseaskekLeellleyle 460
                 +  +d++ i  L+d+L++e+ ++r++  + +s+++ a+    ++  +++L  +l   + 
  CDO71561.1   5 SSLDDIAPIAILMDELRSEDVQLRLNAIHRISTIALALG---PDRARDELIPFLQDSVD 60 
                 56799999******************9999999999997...45568888888877773 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.069
       Ecm29 413 LFdsLeeee.sevrvsIqeALssllsafkeleseaskekLeellleyleadeeesaersvryvavkyanal 482
                 ++++L+ ++ ++vr+   e L  +++ ++   ++++ke+L + +++ +     +++   vry+a+   n+l
  CDO71561.1 224 MYRKLQADDqDSVRLLTVEDLIAIAQQLS---PAEVKEQLLKQIRQTM-----TDKSWRVRYMAASHFNEL 286
                 67888888856888888888888888876...7899999999999999.....788999999999888765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.021
       Ecm29  18 eklLskfLpplLlklasphasvRkkVieilqhinkrik 55 
                 e++++ +Lp  L  l+ + ++vR  +i+ l+++n +i 
  CDO71561.1 371 EATIEHLLPLFLHLLKDEFPEVRLNIISKLEQVNAVIG 408
                 678999****************************9986 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0016
       Ecm29 410 iefLFdsLeeee.sevrvsIqeALssllsafkel..eseaskekLeellleyleadeeesaersvryvavkyana 481
                 +e+L+ +L++++ +++r+++ +AL +++++f +    ++ +++k+  +l e l    +++++ +vr+ a + +++
  CDO71561.1 534 LEMLL-QLAGDPiPNIRFNVAKALETIATSFGDTpdGQQLVQQKIVPVL-EAL----KNDQDADVRFFASRALQK 602
                 55555.8************************988332333344444443.333....477888999998887665 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.5   1.8e+03      12      27 .]      42      57 ..      34      57 .. 0.87
   2 ?    7.0   0.3    0.0091        11       1      11 [.     197     207 ..     197     210 .. 0.90
   3 ?   -1.9   0.1       7.2   8.6e+03       1      22 [.     353     378 ..     353     382 .. 0.66
   4 ?   -2.3   0.0       9.1   1.1e+04       1      14 [.     470     483 ..     470     496 .. 0.70
   5 ?    3.5   0.0      0.13   1.6e+02       2      26 ..     549     586 ..     548     587 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.5
                CTSGGGHHHHHHHCTC CS
    HEAT_PBS 12 lgdeeaipaLleaLqd 27
                lg ++a + L+  Lqd
  CDO71561.1 42 LGPDRARDELIPFLQD 57
                66789*******9998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0091
                 HHHHHHHHHHH CS
    HEAT_PBS   1 vRraAakaLgq 11 
                 vRraAak+L+ 
  CDO71561.1 197 VRRAAAKWLAP 207
                 9********85 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 7.2
                 HHHHHHHHHHHCTS....GGGHHHHH CS
    HEAT_PBS   1 vRraAakaLgqlgd....eeaipaLl 22 
                 vR+a a  +  l      e+ i++Ll
  CDO71561.1 353 VRAALASQISGLAPllgkEATIEHLL 378
                 67777766666666666678888876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 9.1
                 HHHHHHHHHHHCTS CS
    HEAT_PBS   1 vRraAakaLgqlgd 14 
                 +R aAa  L +l+ 
  CDO71561.1 470 IREAAAVNLKKLTE 483
                 58999988887765 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.13
                 HHHHHHHHHHCTS.............GGGHHHHHHHCT CS
    HEAT_PBS   2 RraAakaLgqlgd.............eeaipaLleaLq 26 
                 R + akaL ++ +             + ++p+L ++ +
  CDO71561.1 549 RFNVAKALETIATsfgdtpdgqqlvqQKIVPVLEALKN 586
                 8899*********9999999999998888888877765 PP

>> DUF1357  Protein of unknown function (DUF1357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       9.9   1.2e+04     197     217 ..     122     142 ..     107     145 .. 0.58
   2 ?    9.6   0.1   0.00074      0.88      93     184 ..     207     298 ..     199     322 .. 0.88
   3 ?   -0.5   0.0      0.88   1.1e+03     123     156 ..     509     542 ..     485     560 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9.9
     DUF1357 197 inftefvqaisntykqrriqf 217
                 i  +e +  isn   +++i+ 
  CDO71561.1 122 IHAAESITKISNVLSKQQIEQ 142
                 555666677777665555533 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00074
     DUF1357  93 hlsnhfnkevllakgytlkdimqaqrrelvrkfvpieqikaiakvsdishidgeileqlv.slakvniklrktassnsssvdsvkgnivvkse 184
                  l ++f k+ +l+ g ++   +qa+ ++ vr ++ +e++ aia+    + +  ++l+q+  +++    ++r  a+s +  +  v g+  v+ e
  CDO71561.1 207 PLVKKFTKQHVLTDGLAMYRKLQADDQDSVR-LLTVEDLIAIAQQLSPAEVKEQLLKQIRqTMTDKSWRVRYMAASHFNELAEVVGQELVREE 298
                 57789*************************9.5789********99999*********9626788999************9999999888766 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.88
     DUF1357 123 rkfvpieqikaiakvsdishidgeileqlvslak 156
                  ++  ++ i +i+    +  + geile l+ la 
  CDO71561.1 509 YRMTTVQAIMTISPSLTLDIVRGEILEMLLQLAG 542
                 5556666677777777788899*******99986 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2      0.14   1.7e+02      18      38 ..     181     201 ..     176     201 .. 0.78
   2 ?   -1.8   0.0       3.4     4e+03      18      35 ..     259     276 ..     256     276 .. 0.87
   3 ?    2.2   0.0      0.19   2.3e+02      27      38 ..     307     318 ..     293     318 .. 0.90
   4 ?    1.9   0.0      0.24   2.9e+02      15      40 ..     412     437 ..     411     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.14
                   HHHHHHHHHHHSS-HHHHHHH CS
  Cohesin_HEAT  18 evldtiarrltDsspsVRdAa 38 
                   +++  +a+  +D  p+VR Aa
    CDO71561.1 181 DLRRGFAALVSDDTPMVRRAA 201
                   55666677789********98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.4
                   HHHHHHHHHHHSS-HHHH CS
  Cohesin_HEAT  18 evldtiarrltDsspsVR 35 
                   ++l++i   +tD s  VR
    CDO71561.1 259 QLLKQIRQTMTDKSWRVR 276
                   678999999***999888 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.19
                   HHSS-HHHHHHH CS
  Cohesin_HEAT  27 ltDsspsVRdAa 38 
                   l D+++ VR Aa
    CDO71561.1 307 LKDNEAEVRTAA 318
                   78*********8 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.24
                   GSHHHHHHHHHHHHSS-HHHHHHHHH CS
  Cohesin_HEAT  15 sapevldtiarrltDsspsVRdAaLe 40 
                    ++++l +i + ++D s  VR A++e
    CDO71561.1 412 LSESLLPAIVELAEDKSWRVRQAIIE 437
                   5678888999999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.74u 0.35s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 3711.62
//
Query:       CDO71562.1  [L=271]
Description: hypothetical protein BN946_scf184911.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-29  101.9   0.5    4.5e-29  101.7   0.5    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.5   2.5e-33   4.5e-29       1     259 [.       8     250 ..       8     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 2.5e-33
                  EEEEEEETTEEEEEECTCTTEEEEEEETT.S...TEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEETTEEEECCCCBT......TTCEETBS CS
  Aldose_epim   1 dlitlkngaglsakislyGAtllslkvpdke...qrevllgsddaeeylkdsyfgatlgrvanRianGeFeldGkpyqlpqnee......gknplHGg 89 
                  d++ l++++g sa+i  yGAt++s+k p+++    +e l+ s +          +a++g++++R   G     G+p+ +p +++       k+p+HG+
   CDO71562.1   8 DRVVLQHPKGASAEILYYGATVISWKSPSATgsqPTERLFVSGK----------AALDGSKPVR---G-----GIPVVFPAFGTpthpdhAKLPQHGF 87 
                  5799*************************99*998999999999..........7*********...8.....************************* PP

                  GGGSB-EEEEEEE..TTEEEEEEEEEEETC.HC.STSEEEEEEEEEEETTEEEEEEEEEEESS....S-EEEEEEEEEEEETSSCTCTGGEEEEEEEE CS
  Aldose_epim  90 argreWeveevke..ddgvtvslvlkpdge.eg.ypgdlevrvtytLnednelkieyeatndg....kptpfnltnHtYFnlsgesidshelqieade 179
                  ar+  W+ +++    ++gv+v+l+l p++     + + +++++ +tL e++ l+ +++++ +g     p+ f++ +H Y + +      +e+ i+ + 
   CDO71562.1  88 ARNNVWTFTSTVMdnEAGVSVKLSLVPTEAiRAqFDHPFHLEYVVTLAEHQ-LTTDLHVQHTGlsttPPFEFQALFHNYIRAP-----ANEVHITPLT 179
                  ********999889999********666665338***************99.6666666655553337888**********88.....8889999999 PP

                  EEEECTTSGEEEEEEECTTCCCCCCSSEEHCSSETEEEEEEEESSCSEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT CS
  Aldose_epim 180 ylevdeeliptgelkdvkgtpfdfrqpkaigedlkglDhayllksklkaviidpdkksgiklevsttepalvvytgnflk 259
                  ++ + ++  pt    +   tp  ++++ ++  +   +D +y + +  k+ i++p+ +  i++++++   ++v++++  + 
   CDO71562.1 180 GVSYYDKTEPTE---QARATPK-VENRESVDVQK-YTDFVYENAP-GKYNITWPSGA--IEIRAKNLK-DVVIWNPQQET 250
                  999999666766...4444444.34444444443.78********.99999888877..777777777.99*****8877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1849.14
//
Query:       CDO71563.1  [L=1657]
Description: hypothetical protein BN946_scf184911.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.3e-104  348.8   0.0     6e-104  348.3   0.0    1.2  1  DNA_pol_B       DNA polymerase family B
    8.8e-20   71.1   0.0      8e-11   41.7   0.0    2.2  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    2.6e-15   56.6   5.1    5.5e-15   55.6   5.1    1.6  1  zf-C4pol        C4-type zinc-finger of DNA polymerase delta
  ------ inclusion threshold ------
       0.14   11.0   0.1       0.22   10.3   0.1    1.2  1  DNA_pol_B_2     DNA polymerase type B, organellar and viral
       0.18   11.4   1.7       0.47   10.1   1.7    1.7  1  RecR            RecR protein


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.3   0.0  1.7e-107    6e-104       4     457 ..    1046    1491 ..    1043    1493 .. 0.92

  Alignments for each domain:
  == domain 1  score: 348.3 bits;  conditional E-value: 1.7e-107
                  HHHHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS.-S---.....-BE----EEESS-EEEEEETTHHHHHHHHTT-STTTCE-HCCHCC.T- CS
   DNA_pol_B    4 srvledgqqirveslLlrlakeegfilpdrtekkgkeeegYqGa.....tVlePkkglydkpvlvlDFaSLYPsiiqahNlcyttlvaseeeak.el 94  
                   +vl++g+q++ves+++r+ak e+f+l  +++k ++     q a     +++eP +++y++p++vlDF+SLYPsi++a+N+cy+t + + ++ k + 
  CDO71563.1 1046 FSVLSRGSQFKVESFMFRIAKPESFVLL-SPSK-QDVG--KQNAaecmpLIMEPLSAFYNSPLVVLDFQSLYPSIMIAYNYCYSTCLGRITDFKgQC 1138
                  5799************************.6666.3333..4444456679**************************************999999655 PP

                  -BTT...............TEEE-TCC-EEE-TTS---HHHHHHHHHHHHHHHHHHHHH.CS--HHHHHHHHHHHHHHHHHHHHHHHHHTST.TSTT CS
   DNA_pol_B   95 eaed............eyleveveprlvefvkksvregllpklLkdllakRkaikkelk.eekdefekalldkqQlalKvtaNsvYGftGva.nsrl 177 
                  +  +             + +++v+p++  +vk+ vr+gll+++L++ll+ R ++k+ lk +  d++ +++ld++Ql lK +aN +YG+t+++ ++r+
  CDO71563.1 1139 KFGVtdlrqpagllatLQDHIHVAPNGIMYVKETVRKGLLGRMLTELLDTRVMVKQALKgARDDKALRRILDARQLGLKYIANVTYGYTSATySGRM 1235
                  555578999******9999****************************************44555679***********************99789** PP

                  --HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS......T-EEEEEBSSEEEEE-S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEE CS
   DNA_pol_B  178 pclalAasvTtiGRemLektkelvekkaellskllalpeeaeee.klkviYGDTDSvfielkvkdveellkigkelaeevseklfkkplklefekvy 273 
                  p++++A+s++++GRe+Lek+ +++++                ++ ++kv+YGDTDS+fi l  k+ e++++ig+++a  +++ + ++p+kl+fekvy
  CDO71563.1 1236 PAVEIADSIVQSGRETLEKAIRVINST---------------KKwGAKVVYGDTDSLFIYLPDKTKEQAFRIGQDMADTITS-MNPAPIKLKFEKVY 1316
                  *************************77...............3449************************************.9************* PP

                  EEEEEEETTEEEEEEEEESSTTSE.EEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEEE CS
   DNA_pol_B  274 kkllLisKKkYaglkvektskank.lliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvplekfvlskel 369 
                   + +L++KK+Y+g+k+e++++++  +++KG+++vRrd ++ ++++++++l+ l+++    ++    l ++k++ ++  +++ enkv++++f+++ke+
  CDO71563.1 1317 LPCVLMAKKRYVGFKFENPDDKEPaFDAKGIETVRRDGIPAQQKMTETCLKILFRT----QD----LSQVKDYCCRTWSRILENKVSIQDFIFAKEV 1405
                  *******************999966*******************************....55....556666677777******************* PP

                  SS.CCCSSGCCSHHHHHHHHHHHHC.SS---TTCEEEEEEBETSS.....SS-GGGTEEEH.HHHHHCCSEB-HHHHHH.TTHHHHHHHHT CS
   DNA_pol_B  370 skepenyksknlphlevakrlkkrn.eeapevgdrisYvivekkkevkkknllaseraedp.eyvleknlpidieyYls.qllkevarlle 457 
                  +  + +   +  p ++va r + ++ + +p++g+ri+Yvi+  +      +++  +ra+dp e+ ++++ ++d++yY+s  l+++++r+++
  CDO71563.1 1406 KMGTYSDRVPPPPGVTVAARRMLEDpNDEPQYGERIPYVIIRGDP-----GSRLVDRAVDPhELFRDSHKRLDAHYYISrVLIPPLERIFN 1491
                  **9999999999******9999999899***************98.....999********999999************9999******98 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   2.2e-14     8e-11       5     123 ..      47     181 ..      44     207 .. 0.87
   2 !   27.1   0.0   5.9e-10   2.1e-06     165     332 ..     811     973 ..     810     978 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 2.2e-14
                     TSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEE.............EEEEEECCCCEECCTSSCCHHCEEEEEESSTCHHHHHH CS
  DNA_pol_B_exo1   5 gksvcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvt.............kivkvelvlkkslygyekkpvpylkvsvsnpnelkkir 86 
                     g++ cv++++++pyf++e+  ++ +e v + +++l+++l+  ++              +  + lv+  ++yg++ + +p+lkv +++p  ++++ 
      CDO71563.1  47 GVKTCVHIHQVYPYFFVEYLGKMHPETVNQHIAKLKHSLNHAIAislkrnpqspkskFVRAIVLVKGVHFYGFHANYSPFLKVHIADPAFVNRAV 141
                     7899**************************************9976666666666644455555555*********999**************** PP

                     HHHHH...CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEE CS
  DNA_pol_B_exo1  87 kelsp...leeivdvyeydvdylerflidnkivgfgwysv 123
                     +++++    ++ ++vye+ ++yl +fl d ++ g+gw++ 
      CDO71563.1 142 TIMQSgtvMKTRFRVYESHISYLLQFLCDFGLYGCGWIDF 181
                     **99899977899************************975 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 5.9e-10
                     EEEETEETTSEETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTEEEEEESSHHHHHHHHHHHHHHH--SEEEE CS
  DNA_pol_B_exo1 165 DIeckskkgkfpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgvkvlefdsEkelLqaflefikqydPdvitg 259
                     DI   s++   pd+ +  d+ +++ ++l++ ++++  ++  ft ++ ++      +l p+      kv ++d+E +l+++ ++++ + dPd++ g
      CDO71563.1 811 DIAAPSRGDHVPDPGE--DEAVAVFYALHSSDQESGGNESTFTCESGVIAVGT-DQLNPRRL-RAAKVEFVDNELDLINRLIDIVLELDPDILSG 901
                     6777777888999999..********997766555555566777777633333.44556665.555***************************** PP

                     SSTTTTHHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEE.EEEECEEEETTSEEEEHHHHHHHHSSSSG- CS
  DNA_pol_B_exo1 260 YNidnFDlpYilnRakelykvklsklgrlnkggrskvseigfs.kqarekvkisgrihlDlyrvvkrklklpsY 332
                     + ++   + Y+  R +++     ++++r +  gr ++  + +   ++++  k+ gr +l + r+++ + + + Y
      CDO71563.1 902 WEVQASSWGYLTVRGRSYGLDLGEQISRAP--GRHMGGGSDQWgMKTTSTFKVTGRHVLNVWRIMRSEHTFSIY 973
                     ****************55554445555544..333333333324455677777777777777777776665555 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   5.1   1.5e-18   5.5e-15       1      70 []    1543    1612 ..    1543    1612 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.5e-18
    zf-C4pol    1 ClvCkeklkkalCkkCrsdkqesllkllsrlkelekklneletvCqsCaqgsleeevkCdsrdCpvfYeR 70  
                  Cl+C++ + + lC+ Cr+d + ++ +llsr++++e++l+++++vC sC ++++ e v+C+s+dCp++YeR
  CDO71563.1 1543 CLICGALTPEVLCDVCRADHAVTISELLSRVQSTERRLKDVHSVCGSCCGTAPAEPVQCESLDCPWLYER 1612
                  *****9889********999999*************************888889**************98 PP

>> DNA_pol_B_2  DNA polymerase type B, organellar and viral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.2e-05      0.22     225     253 ..    1099    1127 ..    1091    1148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.2e-05
  DNA_pol_B_2  225 iyeeniyvyDvnSlYPsamthypmPygkp 253 
                    y+ +++v D+ SlYPs+m  y + y ++
   CDO71563.1 1099 FYNSPLVVLDFQSLYPSIMIAYNYCYSTC 1127
                   5899*****************99999887 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.7   0.00013      0.47      18      36 ..    1542    1560 ..    1539    1562 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
                  E-TTT--EESSSS-CCCCS CS
        RecR   18 hCsrCgnlteedlCaICsd 36  
                  +C +Cg lt e lC++C+ 
  CDO71563.1 1542 RCLICGALTPEVLCDVCRA 1560
                  7****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.48
# Mc/sec: 10441.60
//
Query:       CDO71564.1  [L=176]
Description: hypothetical protein BN946_scf184911.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0059   16.4   1.5      0.028   14.2   1.5    2.0  1  AGTRAP          Angiotensin II, type I receptor-associated pr
  ------ inclusion threshold ------
       0.03   13.8   0.4      0.042   13.4   0.4    1.2  1  Peptidase_A22B  Signal peptide peptidase


Domain annotation for each model (and alignments):
>> AGTRAP  Angiotensin II, type I receptor-associated protein (AGTRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.5   3.2e-06     0.028      27     112 ..      32     110 ..      13     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-06
      AGTRAP  27 anftvlavgvWaiaqrdsidAismfliglvltillDiihlsiyyprkalsdvkrfsagmailsLllkPvscflvyrmyreRGGell 112
                 +n+ + + g++     ++++ +  f   l  +++ Dii +  ++++      + f   ++il Lllk    f     +++RGG++ 
  CDO71564.1  32 YNLPIFLFGIYVQEASEAVQSMRAFTFLLGGSMFYDIIWM--FSNT-----QHWFIKFLSILLLLLKIPTTFAFVTAFQQRGGQFS 110
                 5666777777777777888888888888888999999876..3333.....23455668********6666666789******974 PP

>> Peptidase_A22B  Signal peptide peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   4.7e-06     0.042     130     189 ..      50     113 ..      37     119 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.7e-06
                     XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_A22B 130 lpslkvgalLLvglflYDifwVFg..tdvmvevAk....eldiPillklPqlsneieeaskfsiLG 189
                     ++s+++ + LL g ++YDi w F   ++  ++        l+iP  + + +     +   +fs LG
      CDO71564.1  50 VQSMRAFTFLLGGSMFYDIIWMFSntQHWFIKFLSilllLLKIPTTFAFVT--AFQQRGGQFSGLG 113
                     789999*****************8552223332222222334444444333..4445555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1312.57
//
Query:       CDO71565.1  [L=1373]
Description: Glycosyltransferase Family 41 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-68  231.7   0.1    5.4e-38  130.6   0.0    3.2  3  Glyco_transf_41  Glycosyl transferase family 41
    3.5e-10   39.5   1.0       0.36   11.3   0.0    6.1  6  TPR_17           Tetratricopeptide repeat
    1.1e-09   37.6   0.2       0.02   14.7   0.0    5.7  7  TPR_1            Tetratricopeptide repeat
    4.6e-07   29.4   4.9       0.44   10.3   0.0    6.1  6  TPR_11           TPR repeat
    1.8e-06   27.6   0.4       0.56   10.5   0.0    5.7  6  TPR_2            Tetratricopeptide repeat
    9.7e-06   25.4   0.2        6.7    7.2   0.2    5.6  6  TPR_8            Tetratricopeptide repeat
     0.0012   19.1   8.8        0.3   11.4   0.2    4.8  6  TPR_12           Tetratricopeptide repeat
     0.0068   17.1   0.2         52    5.0   0.0    4.9  4  TPR_14           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.2   5.5        9.4    6.3   0.0    5.3  5  TPR_10           Tetratricopeptide repeat
      0.022   15.3   1.6          7    7.2   0.1    4.0  5  TPR_19           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Glyco_transf_41  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0     3e-41   5.4e-38       2     134 ..     848     989 ..     847     996 .. 0.92
   2 !    3.8   0.0    0.0089        16     279     297 ..    1076    1096 ..    1051    1102 .. 0.84
   3 !   93.3   0.0   6.1e-30   1.1e-26     306     470 ..    1162    1330 ..    1159    1331 .. 0.87

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 3e-41
  Glyco_transf_41   2 riGyvssdf......gnhPtshlmqsiPglhdrekvevfcyalspddgttfrkkiakeaehfvdlsqiqcngkaadrikedGihi....lvnmn 85 
                       +Gy+s d       +nhP shlmqs+ g+hdr++++v+ y+ sp dgt++r +ia+ +e+ vd+s  + n+   d+i +  ihi    ++n+ 
       CDO71565.1 848 NLGYISNDVnrdclrSNHPLSHLMQSVFGMHDRNRFNVYLYTTSPWDGTAYRPRIASTVENCVDVSSWSLNT-IIDHIMQHEIHIreleVINLG 940
                      6899999974444446***************************************************99986.68**********77777**** PP

  Glyco_transf_41  86 GytkGarneifalrPaPiqvmwlGyPgtsGasfmdyiitdkvtsPlela 134
                      GytkGarn++fa rP Piq+  +Gy gt Ga + dy++ d ++ Pl+++
       CDO71565.1 941 GYTKGARNDVFAARPCPIQMQLMGYAGTLGAGWCDYLVCDPIACPLDTS 989
                      *********************************************9976 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0089
  Glyco_transf_41  279 rqqy..glPedaivycnfnql 297 
                       r+q    lP+d i++ nfnq+
       CDO71565.1 1076 RKQLfpDLPQDVIIFANFNQV 1096
                       5553237*************7 PP

  == domain 3  score: 93.3 bits;  conditional E-value: 6.1e-30
  Glyco_transf_41  306 emwvnilkrvPnsvlwllrfPavGeanvlataael..glekeriifsnvaakeehvrrGqladvcldtPlcnGhttgmdvlwaGtPvvtlpl 395 
                        +w++il++vP+s+lwllrfP +Ge+++l+ta+    +  + ri f++va k+ h+ r ++ad+ ldt  cn ht + dvlw+ + +v  ++
       CDO71565.1 1162 LVWLRILRKVPRSILWLLRFPGAGEEHLLRTAKMWagDEVAARIRFTDVAKKDWHIFRARVADLFLDTAECNAHTIAADVLWTAASMVNATG 1253
                       58***************************9998763234679**********************************************9998 PP

  Glyco_transf_41  396 etlasrvaasqlatlGvpeliaksr..eeyediavklGtdkeylkairakvwkaraestlfnvkkyaadleklykkl 470 
                             v ++  +     el  + r   ++e     l + +  l ++r +++ +r + +lf++++++++lek + + 
       CDO71565.1 1254 FGDQMTVHSAEEYENRAVELAKSVRyvPHHEPSGAVLPRGEGELLSLRRNIYLNRDQMPLFDTERWTRNLEKGLLEA 1330
                       7777778888777777777765544225677778889999999****************************866655 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0002      0.36       7      32 ..     182     207 ..     178     209 .. 0.92
   2 !    7.5   0.0    0.0033       5.9       6      32 ..     215     241 ..     213     243 .. 0.92
   3 ?   -0.3   0.0         1   1.8e+03       4      16 ..     247     259 ..     245     261 .. 0.89
   4 ?   -1.7   0.0       2.9   5.2e+03      15      24 ..     535     544 ..     533     557 .. 0.81
   5 !   10.6   0.0   0.00035      0.62       1      33 [.     567     601 ..     567     602 .. 0.85
   6 ?    1.7   0.0      0.24   4.3e+02       1      19 [.     603     621 ..     603     628 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      TPR_17   7 eldPnnadaynnLAelllknGdlmtA 32 
                 e++Pn+ + + +LA +++ +Gdl+t 
  CDO71565.1 182 EIHPNHIPILLLLACTYYALGDLETS 207
                 789********************986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0033
      TPR_17   6 leldPnnadaynnLAelllknGdlmtA 32 
                 l+++ n+++a+ n +++++ +G+ ++A
  CDO71565.1 215 LAINANYVEAMSNIGTTMKALGRIDKA 241
                 789********************9998 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1
      TPR_17   4 kaleldPnnaday 16 
                 kal++ P+++da+
  CDO71565.1 247 KALKIRPTYWDAL 259
                 9**********97 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.9
      TPR_17  15 aynnLAelll 24 
                  ynnL+ +l+
  CDO71565.1 535 TYNNLGIVLS 544
                 69****9997 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00035
      TPR_17   1 lylkaleldPnnadaynnLAelll..knGdlmtAr 33 
                 +y+  l+ dP+++ +++nL+ ll+    G++ +A+
  CDO71565.1 567 YYTAGLQMDPKHPHLLTNLGSLLKdqDVGRPWDAV 601
                 59999******************966667777775 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.24
      TPR_17   1 lylkaleldPnnadaynnL 19 
                 +y++a + +Pn ++a + L
  CDO71565.1 603 YYKRATRVNPNLPEAVCGL 621
                 6***********9997765 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.094   1.7e+02       4      19 ..     191     206 ..     188     209 .. 0.83
   2 !   14.7   0.0   1.1e-05      0.02       2      34 .]     223     255 ..     222     255 .. 0.93
   3 ?   -1.3   0.1       1.3   2.4e+03      22      30 ..     281     289 ..     280     291 .. 0.79
   4 ?   -2.2   0.0       2.4   4.3e+03      16      29 ..     334     347 ..     333     348 .. 0.84
   5 ?   -1.8   0.0       1.8   3.2e+03       3      11 ..     535     543 ..     533     544 .. 0.81
   6 ?   -0.7   0.0      0.83   1.5e+03      20      34 .]     564     578 ..     562     578 .. 0.88
   7 !   12.0   0.0     8e-05      0.14      15      33 ..     595     613 ..     582     614 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.094
                 HHHHHHHHHHTT-HHH CS
       TPR_1   4 lynlGnayfklgkyde 19 
                 l  l+ +y+ lg+++ 
  CDO71565.1 191 LLLLACTYYALGDLET 206
                 6789*********986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a  n+G +   lg+ d+A e   kAL+++P++
  CDO71565.1 223 EAMSNIGTTMKALGRIDKAYEWWWKALKIRPTY 255
                 78899999999********************97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.3
                 HHHHHHHHH CS
       TPR_1  22 eyyekALel 30 
                 +yy++AL +
  CDO71565.1 281 AYYRQALAV 289
                 799999976 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.4
                 -HHHHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekALe 29 
                 +++ A+  y +A+e
  CDO71565.1 334 NLEHAILEYTRAIE 347
                 67889999****99 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.8
                 HHHHHHHHH CS
       TPR_1   3 alynlGnay 11 
                 +++nlG ++
  CDO71565.1 535 TYNNLGIVL 543
                 8*****976 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.83
                 HHHHHHHHHHHSTTH CS
       TPR_1  20 AleyyekALelnPnn 34 
                 A  yy   L+ +P++
  CDO71565.1 564 ARTYYTAGLQMDPKH 578
                 778**********86 PP

  == domain 7  score: 12.0 bits;  conditional E-value: 8e-05
                 T-HHHHHHHHHHHHHHSTT CS
       TPR_1  15 gkydeAleyyekALelnPn 33 
                 g++ +A+eyy++A ++nPn
  CDO71565.1 595 GRPWDAVEYYKRATRVNPN 613
                 8999**************9 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.025        45       4      42 .]     198     236 ..     197     236 .. 0.86
   2 !   10.3   0.0   0.00024      0.44       6      30 ..     234     258 ..     229     261 .. 0.91
   3 ?    0.4   0.0       0.3   5.3e+02       9      22 ..     334     347 ..     333     349 .. 0.89
   4 ?   -1.3   0.0      0.99   1.8e+03      28      38 ..     533     543 ..     532     544 .. 0.86
   5 ?    2.1   0.0     0.086   1.5e+02      14      41 ..     565     592 ..     561     593 .. 0.85
   6 !    9.7   0.0   0.00038      0.68      12      34 ..     599     621 ..     598     623 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.025
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 yy++G++e +++   + l+++ +++ea +n+G ++ ++G
  CDO71565.1 198 YYALGDLETSLAISYQILAINANYVEAMSNIGTTMKALG 236
                 8999999999997777899***********999888877 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00024
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaea 30 
                 ++G++++A e++ kAlk++P++ +a
  CDO71565.1 234 ALGRIDKAYEWWWKALKIRPTYWDA 258
                 79*******************9887 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.3
      TPR_11   9 kyeeAieaYkkAlk 22 
                 ++e Ai +Y +A++
  CDO71565.1 334 NLEHAILEYTRAIE 347
                 5899*********8 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.99
      TPR_11  28 aeayynLGlay 38 
                 ++ y+nLG ++
  CDO71565.1 533 PSTYNNLGIVL 543
                 889*****985 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.086
      TPR_11  14 ieaYkkAlkldPdnaeayynLGlayykq 41 
                  + Y + l+ dP+ + ++ nLG ++  q
  CDO71565.1 565 RTYYTAGLQMDPKHPHLLTNLGSLLKDQ 592
                 56688899**************988766 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00038
      TPR_11  12 eAieaYkkAlkldPdnaeayynL 34 
                 +A+e Yk+A + +P+ +ea ++L
  CDO71565.1 599 DAVEYYKRATRVNPNLPEAVCGL 621
                 599***************97765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.068   1.2e+02       4      19 ..     191     206 ..     189     209 .. 0.84
   2 !   10.5   0.0   0.00031      0.56       2      34 .]     223     255 ..     222     255 .. 0.94
   3 ?   -2.5   0.1       4.3   7.7e+03      22      29 ..     281     288 ..     280     291 .. 0.78
   4 ?   -1.0   0.0       1.5   2.6e+03      16      29 ..     334     347 ..     333     348 .. 0.89
   5 ?    0.9   0.0      0.35   6.2e+02      20      34 .]     564     578 ..     561     578 .. 0.91
   6 ?    4.9   0.0     0.019        35      19      33 ..     599     613 ..     595     614 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.068
       TPR_2   4 lynlGlayyklgdyee 19 
                 l  l++ yy+lgd+e 
  CDO71565.1 191 LLLLACTYYALGDLET 206
                 6789*********985 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00031
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ea  n+G    +lg+ ++A e++ kAl++ P++
  CDO71565.1 223 EAMSNIGTTMKALGRIDKAYEWWWKALKIRPTY 255
                 8999***************************85 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.3
       TPR_2  22 eafekAle 29 
                 +++++Al+
  CDO71565.1 281 AYYRQALA 288
                 68999997 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.5
       TPR_2  16 dyeeAleafekAle 29 
                 ++e A+  + +A+e
  CDO71565.1 334 NLEHAILEYTRAIE 347
                 8999********98 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.35
       TPR_2  20 AleafekAleldPnn 34 
                 A+ ++ + l+ dP++
  CDO71565.1 564 ARTYYTAGLQMDPKH 578
                 99***********86 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.019
       TPR_2  19 eAleafekAleldPn 33 
                 +A+e++++A + +Pn
  CDO71565.1 599 DAVEYYKRATRVNPN 613
                 69************9 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.2    0.0038       6.7       2      33 ..     189     220 ..     188     221 .. 0.83
   2 ?    4.6   0.0     0.025        44       2      33 ..     223     254 ..     222     255 .. 0.91
   3 ?   -2.1   0.0       3.6   6.4e+03      21      28 ..     280     287 ..     275     290 .. 0.81
   4 ?   -2.9   0.0       6.2   1.1e+04      16      29 ..     334     347 ..     333     348 .. 0.87
   5 ?    0.7   0.0      0.46   8.2e+02      18      34 .]     562     578 ..     558     578 .. 0.89
   6 ?    5.0   0.0     0.019        34      15      33 ..     595     613 ..     579     614 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0038
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++++l+++y  lgd+e + +   + l ++ +
  CDO71565.1 189 PILLLLACTYYALGDLETSLAISYQILAINAN 220
                 6899*************998887777777665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.025
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ea+ n+g + + lg++++A e+  kal+++p+
  CDO71565.1 223 EAMSNIGTTMKALGRIDKAYEWWWKALKIRPT 254
                 6788999999*******************996 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.6
                 HHHHHHHH CS
       TPR_8  21 keyyekal 28 
                 ++yy++al
  CDO71565.1 280 VAYYRQAL 287
                 79****98 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 6.2
                 -HHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekale 29 
                 ++e A+  y +a+e
  CDO71565.1 334 NLEHAILEYTRAIE 347
                 78999*9****998 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHH. CS
       TPR_8  18 eeAkeyyekaleldpdn 34 
                 + A  yy   l++dp++
  CDO71565.1 562 HLARTYYTAGLQMDPKH 578
                 6799***********97 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.019
                 T-HHHHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleldpd 33 
                 g+   A+eyy++a++ +p+
  CDO71565.1 595 GRPWDAVEYYKRATRVNPN 613
                 555579***********97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.2    0.0038       6.8      41      74 ..     184     217 ..     176     220 .. 0.84
   2 !   11.4   0.2   0.00017       0.3       7      67 ..     192     244 ..     187     254 .. 0.79
   3 ?   -2.1   0.1       2.8   5.1e+03      66      75 ..     281     290 ..     280     294 .. 0.57
   4 ?   -3.3   0.0       6.3   1.1e+04      47      55 ..     535     543 ..     534     545 .. 0.76
   5 !    8.9   0.0     0.001       1.8      39      74 ..     576     610 ..     558     613 .. 0.69
   6 ?   -2.0   0.2       2.6   4.6e+03      63      77 .]    1262    1276 ..    1261    1276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0038
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelleealai 74 
                 hp+ + +l  L+ +y+alg++e  l++  + lai
  CDO71565.1 184 HPNHIPILLLLACTYYALGDLETSLAISYQILAI 217
                 8888999999999999999999999988887776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00017
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                   la ++++lg+++ +l++  + l+i       +   +++++ n+g++  algr ++A e+
  CDO71565.1 192 LLLACTYYALGDLETSLAISYQILAIN-----AN---YVEAMSNIGTTMKALGRIDKAYEW 244
                 467888899999999999999998888.....54...699999999999999999999665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.8
      TPR_12  66 elleealaia 75 
                 +++++ala++
  CDO71565.1 281 AYYRQALAVC 290
                 4556666554 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.3
      TPR_12  47 tlrnLgrly 55 
                 t++nLg+++
  CDO71565.1 535 TYNNLGIVL 543
                 789999887 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.001
      TPR_12  39 pdhpltattlrnLgrly..ralgryeeAlelleealai 74 
                 p+hp +   l nLg l+  +  gr+ +A+e++++a+++
  CDO71565.1 576 PKHPHL---LTNLGSLLkdQDVGRPWDAVEYYKRATRV 610
                 666665...5555555521366*************986 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 2.6
      TPR_12   63 eAlelleealaiaek 77  
                   A+e+ ++a+++a++
  CDO71565.1 1262 SAEEYENRAVELAKS 1276
                  69*********9985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.2   5.7e+03      10      36 ..     197     223 ..     188     230 .. 0.78
   2 ?    5.0   0.0     0.029        52       8      38 ..     229     259 ..     222     264 .. 0.88
   3 ?    0.7   0.0      0.75   1.3e+03      20      43 ..     564     587 ..     561     589 .. 0.89
   4 ?    4.5   0.0     0.042        76      19      39 ..     599     619 ..     579     623 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.2
      TPR_14  10 allalGdpdeAiallrralalaPddae 36 
                  ++alGd+++++a+  ++la + +  e
  CDO71565.1 197 TYYALGDLETSLAISYQILAINANYVE 223
                 6999*****999988888888777666 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeaw 38 
                 +  + alG+ d+A +   +al+  P+ ++a+
  CDO71565.1 229 GTTMKALGRIDKAYEWWWKALKIRPTYWDAL 259
                 566889********************99886 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.75
      TPR_14  20 AiallrralalaPddaeawlllaq 43 
                 A++++ + l+ +P+++ +++ l+ 
  CDO71565.1 564 ARTYYTAGLQMDPKHPHLLTNLGS 587
                 899*************99999875 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.042
      TPR_14  19 eAiallrralalaPddaeawl 39 
                 +A+++++ra + +P+ +ea  
  CDO71565.1 599 DAVEYYKRATRVNPNLPEAVC 619
                 8**************999975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.06   1.1e+02       8      31 ..     194     217 ..     190     219 .. 0.86
   2 ?    6.3   0.0    0.0053       9.4       4      32 ..     224     252 ..     222     252 .. 0.94
   3 ?   -0.4   0.2      0.66   1.2e+03      22      33 ..     280     291 ..     275     291 .. 0.86
   4 ?    3.0   0.1     0.057     1e+02       3      13 ..     534     544 ..     534     545 .. 0.89
   5 ?   -1.0   0.0      0.98   1.7e+03       5      28 ..     582     607 ..     581     610 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.06
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 La++++++g+++ ++a+  + lai
  CDO71565.1 194 LACTYYALGDLETSLAISYQILAI 217
                 9***********999998777776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0053
      TPR_10   4 slnNLanalrqrgrydeAealleealair 32 
                 +++N++ +  ++gr d+A ++  +al ir
  CDO71565.1 224 AMSNIGTTMKALGRIDKAYEWWWKALKIR 252
                 8*************************987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.66
      TPR_10  22 ealleealairr 33 
                 +a++++ala+++
  CDO71565.1 280 VAYYRQALAVCQ 291
                 799******986 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.057
      TPR_10   3 sslnNLanalr 13 
                 s++nNL+++l+
  CDO71565.1 534 STYNNLGIVLS 544
                 69******996 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.98
      TPR_10   5 lnNLanal..rqrgrydeAealleea 28 
                 l+NL+ +l  +++gr  +A++++++a
  CDO71565.1 582 LTNLGSLLkdQDVGRPWDAVEYYKRA 607
                 67888888556667777777777776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.022        39      17      42 ..     180     205 ..     174     210 .. 0.84
   2 ?    7.2   0.1    0.0039         7       3      45 ..     200     242 ..     198     245 .. 0.93
   3 ?   -3.9   0.1        10   1.8e+04      29      41 ..     285     297 ..     275     302 .. 0.67
   4 ?    2.1   0.0      0.15   2.8e+02      10      57 ..     564     613 ..     562     618 .. 0.74
   5 ?    1.0   0.0      0.36   6.4e+02       5      33 ..     595     623 ..     588     627 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.022
      TPR_19  17 alqedpknaearllLAeallalgqld 42 
                 + +  p++  ++llLA  ++alg+l+
  CDO71565.1 180 LREIHPNHIPILLLLACTYYALGDLE 205
                 44669*******************98 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0039
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 a gd++  la+  q+l+ ++++ ea  +    + alg++d+A 
  CDO71565.1 200 ALGDLETSLAISYQILAINANYVEAMSNIGTTMKALGRIDKAY 242
                 67999999*********************************95 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 10
      TPR_19  29 llLAeallalgql 41 
                  +LA +++ + ++
  CDO71565.1 285 QALAVCQYVQQRV 297
                 4577777766665 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.15
      TPR_19  10 AlalleqalqedpknaearllLAeallal..gqldeAealLdalpeedpd 57 
                 A  ++++ lq dpk++ ++ +L  +l  +  g++ +A +  +++ + +p+
  CDO71565.1 564 ARTYYTAGLQMDPKHPHLLTNLGSLLKDQdvGRPWDAVEYYKRATRVNPN 613
                 55677778899999999999988888887777777777777777776666 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.36
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAe 33 
                 g++ +A++++++a   +p+ +ea  +L++
  CDO71565.1 595 GRPWDAVEYYKRATRVNPNLPEAVCGLVN 623
                 56668**************9999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 9195.76
//
Query:       CDO71566.1  [L=105]
Description: hypothetical protein BN946_scf184911.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 787.40
//
Query:       CDO71567.1  [L=291]
Description: hypothetical protein BN946_scf184911.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-32  112.4   0.0    1.7e-31  109.6   0.0    2.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   9.7e-36   1.7e-31      72     238 ..      13     206 ..       6     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 9.7e-36
                 ...H-S-EEEE-S-...-SHHHHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHT CS
     TAL_FSA  72 llgadgrvslEVdarlsddteatieeArrlialye.....renvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRidd 165
                  +   grv+++++++ +++teati++A++l+al+e     +++v+IKiPat+e+i A++ L++ Gi++ +T +Fs+ qa+aa +ag+ +++p+ +  + 
  CDO71567.1  13 HI--TGRVHAQTSPSTAYSTEATIQHAKKLVALFEtngipKSRVCIKIPATPESIVACNYLERLGIRTLATCLFSVPQAMAAHQAGCLYVAPYFNGSAP 109
                 44..8******************************************************************************************9999 PP

                 TT.....................................S-HHHHHHHHHHHHHHHT-S-EEEEBS--SHHHHHHHH..T-SEEEE-HHHHHHHT--HH CS
     TAL_FSA 166 llkkleek.........................dklkgkddgvalvkeiynyykklgysTkvmaasfrnveeveela..gcdtvTippkllealakhgk 237
                  l  l +                          d+ +++ +   ++  i+++yk +g  T vm as+ +++ev++l+   +d++T++ ++l++la+ ++
  CDO71567.1 110 FL--LPPPiltppyrnlkelrvhfepgvwkeygDTAREH-PMAPVIGAIVQLYKGIGARTLVMPASIVTAKEVLALVslKPDHLTLSGAVLDQLATAES 205
                 88..4443566789999999**********996665555.****************99****************7652269**************9988 PP

                 H CS
     TAL_FSA 238 t 238
                  
  CDO71567.1 206 P 206
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2151.86
//
Query:       CDO71568.1  [L=150]
Description: hypothetical protein BN946_scf184911.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00093   18.6   0.0    0.00093   18.6   0.0    1.1  1  Med20     TATA-binding related factor (TRF) of subunit 20 of 


Domain annotation for each model (and alignments):
>> Med20  TATA-binding related factor (TRF) of subunit 20 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.2e-08   0.00093     130     165 ..       3      39 ..       1     114 [. 0.80

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.2e-08
                 EEEEEE.BEE.SSEEEEEEEEECSS.S---EEEEEEE- CS
       Med20 130 kvegggvYel.gdfrvRvgdvfqtq.rvrGllvEieyr 165
                 +veg + Y +  d++vR+g+v + +  v+G+ +E ey 
  CDO71568.1   3 TVEGHV-YSIgTDWLVRAGNVLLAGgAVKGMFLEAEYL 39 
                 555555.***88************99***********4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1094.35
//
Query:       CDO71569.1  [L=330]
Description: hypothetical protein BN946_scf184911.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.022   15.6  13.3        1.2   10.2   0.5    5.1  5  WD40         WD domain, G-beta repeat
      0.066   13.5   0.0         15    6.0   0.0    2.7  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.51   4.6e+03      22      34 ..     114     125 ..      77     127 .. 0.51
   2 ?   -0.4   1.1      0.28   2.5e+03      22      38 .]     159     175 ..     135     175 .. 0.68
   3 ?    9.5   0.0    0.0002       1.8      13      38 .]     194     220 ..     186     220 .. 0.80
   4 ?   -0.6   0.0      0.32   2.9e+03      16      32 ..     240     260 ..     233     261 .. 0.68
   5 ?   10.2   0.5   0.00013       1.2      21      37 ..     311     328 ..     285     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.51
                 SSEEEEE.ETTSEE CS
        WD40  22 gawlasG.sdDgtv 34 
                 g++++ + s Dg++
  CDO71569.1 114 GKLVV-SlS-DGSL 125
                 33344.335.7766 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.28
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                  + + sG+dD + + Wd
  CDO71569.1 159 TNVVYSGGDDLKMKGWD 175
                 23367899897777776 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0002
                 EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw.lasGsdDgtvriWd 38 
                 vt ++ +p+    la Gs+D+tvr++d
  CDO71569.1 194 VTTIQSHPYMEHtLAVGSYDNTVRLFD 220
                 6677666666667899*********98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.32
                 EEEETTSSE....EEEEETTS CS
        WD40  16 lafspdgaw....lasGsdDg 32 
                 ++++p+ +     l++++ Dg
  CDO71569.1 240 VKWHPSPTRrndlLVACMHDG 260
                 566666655666588897687 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00013
                 TSSEEEEEE.TTSEEEEE CS
        WD40  21 dgawlasGs.dDgtvriW 37 
                 dg+++as+s +D+t+++W
  CDO71569.1 311 DGTLVASCSfYDHTLHLW 328
                 77789999768******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0043        39      53      77 ..     116     140 ..      69     156 .. 0.76
   2 ?    6.0   0.0    0.0016        15      49      69 ..     203     223 ..     188     258 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0043
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhsls 77 
                  L+v+ sdg++++l+ e+g+ +  ++
   CDO71569.1 116 LVVSLSDGSLSILEPENGTGLCVVE 140
                  89***************98665544 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  49 dgklLavaysdgevrlldaes 69 
                   ++ Lav+  d++vrl+d  +
   CDO71569.1 203 MEHTLAVGSYDNTVRLFDTRK 223
                  5899*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2387.62
//
Query:       CDO71570.1  [L=517]
Description: hypothetical protein BN946_scf184911.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-06   27.1   0.2    1.4e-05   25.7   0.1    1.7  2  TMEM135_C_rich  N-terminal cysteine-rich region of Transmembr
  ------ inclusion threshold ------
        2.9    8.3   9.5        1.6    9.2   1.1    2.9  3  ATP-synt_C      ATP synthase subunit C


Domain annotation for each model (and alignments):
>> TMEM135_C_rich  N-terminal cysteine-rich region of Transmembrane protein 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   1.3e+04      91     114 ..     126     148 ..     117     160 .. 0.64
   2 !   25.7   0.1   1.6e-09   1.4e-05      12     122 ..     302     425 ..     293     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
  TMEM135_C_rich  91 slvGfgaaliasyiaillerksrr 114
                     s   f++ +++  +a+ l + srr
      CDO71570.1 126 SHKTFLSNIVSCTLAVALLH-SRR 148
                     56677888888887776643.333 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 1.6e-09
  TMEM135_C_rich  12 spscvqsalditrsaleeslkiyaplyliaavlrrrkidyk...lkklvkeilrsasfltanaalvlvlfcllrrl.lGkly......sslvGfg 96 
                       sc+  a   + +a+ e++ iy p++++  +++r ++  +   l  ++ ++ rsasfl++  + +    c+ r l l +l+       +   fg
      CDO71570.1 302 GGSCLANASVRGMQAFAEAVAIYLPVHILPILITRPRKLLRlhtLLSTLLSVARSASFLSTFVSSIWFAVCFARTLvLARLFpgiphdFWDGPFG 396
                     5689999999999*****************999886666661124455667789*****998888888889998752578873333334677799 PP

  TMEM135_C_rich  97 aaliasyi...aillerksrrGlltiyva 122
                      ++ +  +   +i +er  rrG +++yv 
      CDO71570.1 397 GTFLGCLLcgaSIWIERDRRRGEMALYVL 425
                     999988764436***************95 PP

>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.1   0.00017       1.6       8      27 ..      75      94 ..      74      99 .. 0.92
   2 ?    3.9   0.1    0.0075        67      42      52 ..     314     324 ..     311     329 .. 0.91
   3 ?   -3.9   0.3         2   1.8e+04      39      48 ..     398     407 ..     395     410 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
                .GGGHHHHHHHHHHHHHHHH CS
  ATP-synt_C  8 GlsalgsGigiGkagsagir 27
                G++a++s+i +G+ag+a ir
  CDO71570.1 75 GITAFASAITVGVAGGATIR 94
                99***************998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHH CS
  ATP-synt_C  42 ilafaeaialy 52 
                 ++afaea+a+y
  CDO71570.1 314 MQAFAEAVAIY 324
                 68********* PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2
                 HHHHHHHHHH CS
  ATP-synt_C  39 sliilafaea 48 
                 +++++ +++a
  CDO71570.1 398 TFLGCLLCGA 407
                 4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3694.58
//
Query:       CDO71571.1  [L=399]
Description: hypothetical protein BN946_scf184911.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   33.4   0.9    2.9e-08   33.1   0.9    1.1  1  Pex24p    Integral peroxisomal membrane peroxin


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.9   1.6e-12   2.9e-08     240     366 .]     104     233 ..      43     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.6e-12
      Pex24p 240 adiildespetrkpkrftveifEnqrrwllgk...gWtsslfsserydwt...detrkalkespsgvdhledvkpPe.dWkWdekkkWrlDlepdewvk 331
                 +d+  + ++e  k +  + +++Enqr  ++          l++ +++++t    e++  +k+ p  + +led  +P+ +WkW+    W +D+  d+ v+
  CDO71571.1 104 SDLAAELDKEYDKDVYRWAILYENQRGAMVFStpyYSALTLLPLDPPPFTvptAEPSPRKKQ-P--TVTLEDYPLPDgSWKWVS-RAWMIDMRGDGQVQ 198
                 23333333333377888999******9986544314456899********555222222333.3..478********99*****.9******9999884 PP

      Pex24p 332 eeeekkGWvYddnk....wkepstedslsketRRRrwiR 366
                      +G+ Y+ ++    w  +    s ++ +RRRrwiR
  CDO71571.1 199 ----YDGFEYSSSFrsrkWGPDPGFMSHRGLVRRRRWIR 233
                 ....3367777444333366666688889*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2864.92
//
Query:       CDO71572.1  [L=1368]
Description: hypothetical protein BN946_scf184911.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-18   66.0   0.0    8.8e-18   64.6   0.0    1.7  1  HA2          Helicase associated domain (HA2)
      4e-13   49.7   0.0      1e-12   48.4   0.0    1.7  1  Helicase_C   Helicase conserved C-terminal domain
    6.3e-13   49.2   0.0      2e-05   25.2   0.0    2.7  2  dsrm         Double-stranded RNA binding motif
    2.1e-07   30.9   0.1    4.6e-07   29.8   0.1    1.5  1  DEAD         DEAD/DEAH box helicase
    1.8e-05   25.1   0.0      4e-05   24.0   0.0    1.5  1  AAA_19       AAA domain
    1.9e-05   24.9   0.0    4.5e-05   23.7   0.0    1.6  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
  ------ inclusion threshold ------
      0.017   15.4   0.1      0.063   13.6   0.1    2.0  1  AAA_22       AAA domain
      0.062   13.3   0.1       0.57   10.2   0.1    2.3  1  ResIII       Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   3.9e-21   8.8e-18       1      77 [.     927    1001 ..     927    1033 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 3.9e-21
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee 77  
                  A++ L+ +gALd ++nlT+lG+ + +lP++prl+++ l+++ +  +cld +it++A++ ++e+f+ + + ++e +++
  CDO71572.1  927 AIKSLHMVGALDANNNLTSLGHVLLQLPVDPRLGRLVLLGSLF--RCLDAAITLAAIMGAREPFVAPMHVKAEAQAR 1001
                  7899************************************555..***********************987666543 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   4.6e-16     1e-12       8     110 ..     729     861 ..     721     862 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 4.6e-16
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHH............HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vkll............lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdl 93 
                 + l ++ ++g +l+f++ +d+++   + l            + ++ +++  lh+++p  e+++i+e   +g ++++++t++ae++++ip+v +V++   
  CDO71572.1 729 HVL-KKTDDGHVLVFLPGWDDISAvRRCLvddrsrgfgfdfNDTSRFSIHLLHSTIPVAEQQAIFEPPPAGIRRIILSTNIAETSVTIPDVVYVVDTAR 826
                 334.688999**********88664223355544444554444449*************************************************8888 PP

                 SSSH..................HHHHHHHTTSSST CS
  Helicase_C  94 prnv..................tsyiqriGRtgRa 110
                  ++                   ++++qr+GR+gR 
  CDO71572.1 827 VKEQrydpsrhisnlvsawvgtSNLNQRAGRAGRH 861
                 8553345577778889999999************6 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.6e-07   0.00035      33      65 ..     202     237 ..     195     239 .. 0.90
   2 !   25.2   0.0   9.1e-09     2e-05       4      67 .]     274     334 ..     272     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
                 EEEEEEE...TTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm  33 Fvvtvkv...ngklygsGvgsnKKeAeqsAAedale 65 
                  ++tv+v   n +++g+G   nKK+Ae++AA+ a+ 
  CDO71572.1 202 HRCTVNVrhgNAEIVGTGDHPNKKQAENLAALSAVY 237
                 6899*****999********************9975 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 9.1e-09
                 HHHH.HHHHTTSEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS
        dsrm   4 kLqe.ycqkkgkppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedalekL 67 
                 +++  yc+++++  +  + s+++      ++++ ++v+++++g G+g++KK+A  ++  d++++L
  CDO71572.1 274 QFMDyYCRRFRFSKPDIVYSQPTR----STWQADMIVGDRRIGFGKGNSKKDAMMRCYTDVVQYL 334
                 67888******6666666666666....49*********************************98 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   2.1e-10   4.6e-07      10     170 ..     460     621 ..     451     626 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.1e-10
                 HHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEET.TSSHHHHHHHHHTTCSEEEEEHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  10 lilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliig.gvaardqlskldngvdivvgtpg 106
                 ++ + +  ++ a+TGsGKT+     +l++ +e+ +  +  +++  P r  a  +++++ k   + ++ r   +ig +v+ +++l +   +  +++ t+g
  CDO71572.1 460 HVNEHDVTICMAATGSGKTTQIPQLILDEWIERGEGAKCNIICTQPRRIAAISVAERVAKERGEvCG-RG--TIGyQVRFESKLPEP--HGSVTYCTTG 553
                 4444445567799*****************9987888889999*************99665553144.22..344344444444444..5677777777 PP

                 HHHHHH.......HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 107 rlddll.......stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                  +++ +       s  + ++++v+ +++DE+++   +   d +  +l++l      +k+  +++++SAT+ 
  CDO71572.1 554 VFLRRMqsalleaS-SRSSMDEVTHIIVDEVHERDVD--IDLMLVVLKRLLAERRAQKKPIRIVLMSATID 621
                 66665545666642.3446**************9998..66666666666555556666677*******97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.8e-08     4e-05       9     129 ..     463     604 ..     455     615 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.8e-08
      AAA_19   9 kekvllvtaGpGtGKTrvlkh.ivallvelggvkpeeillvaftgrAakelrerlaalgae......................atTiHrlalldfddll 84 
                 +++v + +a  G+GKT+ + + i+ +++e+g+ +  +i++  + + Aa  ++er+a+  +e                        T+   ++  f +++
  CDO71572.1 463 EHDVTICMAATGSGKTTQIPQlILDEWIERGEGAKCNIICTQPRRIAAISVAERVAKERGEvcgrgtigyqvrfesklpephgSVTYCTTGV--FLRRM 559
                 67889999********999652678999999998899999999999*********6666668886666666666666666655444443322..22222 PP

      AAA_19  85 tealelleeaeeekklqeeellivDEfq..dvd.elqyrLlkallgek 129
                   + +ll ea++++ + e +++ivDE+   dvd +l+  +lk+ll e+
  CDO71572.1 560 --QSALL-EASSRSSMDEVTHIIVDEVHerDVDiDLMLVVLKRLLAER 604
                 ..23344.457778885666******9633899999999999998655 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     2e-08   4.5e-05       2      80 ..    1110    1198 ..    1109    1200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2e-08
                   HHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTT......T...TSSSEEEEEEEEES......SSEEEEEEEEE-HHHHHHHS CS
  OB_NTP_bind    2 raillaGlypqiarkdpskkdyktartktrvfihpsSvlak......nekekepewvvytelvet......tklylrdltaidpawLllfa 80  
                    a+++ ++ p+ a+++ ++  y+ta  ++ v++hpsSv+ +      n  + e + ++y e+ ++      +  yl  +t++dp++ +lf+
   CDO71572.1 1110 AALIAVACQPKFAIRTGERT-YRTAV-DKTVLVHPSSVNHRkkempqNGPNIEKQIIAYMEKRQNisanqnAEKYLVATTRLDPLTYVLFG 1198
                   689999*******9987776.99997.*************878888777788888******999889999677************999997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   2.8e-05     0.063       6     128 ..     465     616 ..     460     622 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsstsskdllrellralglelka....................... 70 
                  ++++++ +G+GKTt + +l     e+++  e           +                +++++++++ g+ + +                       
  CDO71572.1 465 DVTICMAATGSGKTTQIPQLILD--EWIERGEgakcniictqpR-----------RIAAISVAERVAKERGEVCGRgtigyqvrfesklpephgsvtyc 550
                 6799***************9986..5777777544444443322...........22455556666666666666666666666666888888997554 PP

      AAA_22  71 .erlsseellealeqalrarav......ielliiDEaqhlr.s.eealeeLrsllnl...srkgvqliLv 128
                   +  +    ++++ al +++       +  +i+DE++  +   + +l  L++ll     ++k+++++L+
  CDO71572.1 551 tTGVFL----RRMQSALLEASSrssmdeVTHIIVDEVHERDvDiDLMLVVLKRLLAErraQKKPIRIVLM 616
                 433334....55555555555555559999********97553555555554444434556888888886 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00025      0.57       5     146 ..     434     588 ..     430     622 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
                 -HHHHHHHHHHT.................TTSEEEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG......GEE CS
      ResIII   5 reyQeeaienlleklks...........krdkrglikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseayke..igk 87 
                  + Q e i+n++++l             +++   +  +aTG+GKT  + +li   + +++e    +++   pr++      e+++k   e   +  ig 
  CDO71572.1 434 ADPQLESIRNTRASLPVftkseellkhvNEHDVTICMAATGSGKTTQIPQLILDEWIERGEGakcNIICTQPRRIAAISVAERVAKERGEVCGRgtIGY 532
                 678999999999666556666777777666666667779******999777765555544444455555555554333333444333333322222444 PP

                 EESSS-B--.......-SEEEEEHHHHHHTH.........HHHTTT-SEEEEETGGGTTS CS
      ResIII  88 kvsgdkkkakekdstnkkilvttiqsldadseee.eeeseellrdrfdviiiDEaHrlga 146
                  v+ ++k +    + + +++  t+  + ++++++  e+s + + d+   ii+DE+H    
  CDO71572.1 533 QVRFESKLP----EPHGSVTYCTTGVFLRRMQSAlLEASSRSSMDEVTHIIVDEVHERDV 588
                 444444444....33333333333333333322234445666666666777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 9287.60
//
Query:       CDO71573.1  [L=933]
Description: hypothetical protein BN946_scf184911.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.5e-128  427.0   5.4   1.3e-127  426.6   5.4    1.1  1  Adaptin_N        Adaptin N terminal region
      7e-39  132.5   0.0    1.5e-38  131.5   0.0    1.6  1  Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
    4.1e-13   49.6   0.1    9.2e-13   48.5   0.1    1.6  1  Alpha_adaptinC2  Adaptin C-terminal domain
    3.6e-06   27.1   2.0    0.00074   19.6   0.1    2.8  2  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
      0.016   15.4   2.5        1.7    9.2   0.0    4.2  5  HEAT             HEAT repeat
      0.029   12.8   0.2      0.047   12.1   0.2    1.2  1  Vitellogenin_N   Lipoprotein amino terminal region
       0.11   12.7   2.0       0.45   10.7   0.3    2.6  2  RTP1_C1          Required for nuclear transport of RNA pol II


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.6   5.4  4.9e-131  1.3e-127       1     519 [.      20     555 ..      20     560 .. 0.96

  Alignments for each domain:
  == domain 1  score: 426.6 bits;  conditional E-value: 4.9e-131
                 XHHHCCHHHHHHCCSSS....-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHH CS
   Adaptin_N   1 eekriqqelaeilnsnk....dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqli 95 
                 eekri++e+a+i++ +k    d+++kkk +v+k+i++++lG++v+ +++e v+l++s+++++K+++Yl+++ll++e++d ++Lv+ns++kDl+d+n+++
  CDO71573.1  20 EEKRINKEMANIRKRFKdgnlDGYQKKK-YVAKVIFTYILGYKVDVGHMEAVNLISSSKYSEKQIGYLAVTLLMHENSDFLRLVVNSIRKDLNDNNEIH 117
                 689***************9977788877.********************************************************************** PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSH..HHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHH CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkdrsp..yvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.kkndrlllkll 190
                  +lAL+++++++++e+ae+l +++ +ll ++++  +vrkkAal++l+ly+k p+ ++ q ++ +i+++++d d gvvl++ +l+  + + ++++++ + 
  CDO71573.1 118 NCLALHAIANVGSQEMAEALSEDVHRLLISPTSenFVRKKAALTLLRLYRKHPEVIPAQeWALRIVSIMDDPDLGVVLSVASLILALaQDHPEAYSIAY 216
                 *******************************9999****************************************************777777777999 PP

                 HHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH....HHHHHHHCGGCG.........CSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHS CS
   Adaptin_N 191 pklvrrLcnllteldpwlqvkiiklltrlarqepeersk..kellesllnllq.........ssnnaVlletvnlivelapknelivlavnaLvrllss 278
                 +k v rL+    ++ pwlq+k+++ll+++ +++++  ++  +e+l++++n  +         +++ aVl+e++nl+++l+ +++l+  a+  L r++ss
  CDO71573.1 217 QKAVDRLN---RVPIPWLQIKLLRLLQIYPPSDDPTLQVmlQEVLQTIMNNCNepsrnvqhnNAQHAVLFEAINLAIHLDGNSPLVNTAAVLLARFISS 312
                 ******99...88*******************999996656666666666666********************************************** PP

                 SCCTCHHHHHCHHHHHHHHX..XTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCH CS
   Adaptin_N 279 kdenlryvaLrtllkivkke..pkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatd 374
                 k++n+ry+ L+t+++++ +    +a++ h+ ++i +l+ d+d+s+r++aldll+ ++d +N + iv eL+ y+ +vad+ +++++v +I++l+ek+a+ 
  CDO71573.1 313 KETNVRYLGLDTMAHLAARTdnLEAIKtHQGTIILSLR-DKDISVRRRALDLLYSMCDVDNSELIVGELLRYL-KVADYGLREEMVLKIAILTEKYAST 409
                 *****************9987789**************.**********************************.9************************ PP

                 HHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT.....HHHHHHCTTTTTTTSXHHH CS
   Adaptin_N 375 aewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygelvsnte..sasdllrslaekfvlesekv 470
                 ++w++d++lells +g++v++e+++++ ++++++++l++++++ ++e+l++  ++e ++++  ++lGeyg l+ n+   s+ ++++ l+ k   + + +
  CDO71573.1 410 YKWYVDTILELLSAAGDHVGEEVWYRVVQIVTNTEDLQAYAAKVVFEYLKSpSSHESLVKVGGYILGEYGHLIANEPgySPIEQFQVLHAKSQFCMAPT 508
                 ***************************************************9999********************4448999***************** PP

                 HHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHH CS
   Adaptin_N 471 klqiltalvKlyltspdketqekliqlvlslatssdlevrdRaveylql 519
                 ++ +l++++K  +++p  e++++l+++++++ + +d+++++Ra+e+  l
  CDO71573.1 509 RALLLSTYIKWVNVFP--EIKPQLVNVFERYRHVLDVDLQQRACEFYAL 555
                 ****************..7999***********99*********87665 PP

>> Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   5.7e-42   1.5e-38       1     112 [.     802     914 ..     802     915 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 5.7e-42
  Alpha_adaptin_C   1 FleptelssedFfkrWkqlggapreaqkifklk.aaekeideetvrkvleGfrlavlenvdpnpenivgagvlhtsesgkvgcLlrlepNkqak 93 
                      Fle ++l + dFf+rWk +gg+preaq+if ++ +a+ +id + +r+v+ G ++++le++dpnp+n+vgag++ht++ gkvgcLlrlepN++ak
       CDO71573.1 802 FLEGVKLGPADFFERWKLIGGPPREAQSIFPIAlDATGHIDLAKQRQVVAGHGFQILEGIDPNPSNLVGAGIVHTAVDGKVGCLLRLEPNREAK 895
                      8999****************************99************************************************************ PP

  Alpha_adaptin_C  94 mvrltiRatkeavpktllk 112
                      + r+tiR+t+e v++++ k
       CDO71573.1 896 LSRVTIRSTSEDVASEVQK 914
                      **************99987 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   3.6e-16   9.2e-13       1     104 [.     691     789 ..     691     796 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 3.6e-16
                      SEEEEEEETTEEEEEEEEETTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEESCTTS-EEEEEEEE CS
  Alpha_adaptinC2   1 pevvlyekddlqIgfkfekperpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllienpskkplrmrlris 94 
                      pe+vlye+ ++qIg+k+++  ++ ++++ ++ +Nk s+p+++f++ +   ++  l+ + ++       p +qi+q++ +e+++ ++ ++ l +s
       CDO71573.1 691 PEGVLYEDVQIQIGIKSKY--QGPVGQVAVYVGNKMSAPLTSFTTALHTEEGEALTASFIKIAPSMLAPRTQIQQIVQVECKKVFRKPPILVVS 782
                      689****************..***********************************8888887777557************************* PP

                      EECTCEEEEE CS
  Alpha_adaptinC2  95 ykvgqaikeq 104
                      +    a++ q
       CDO71573.1 783 FI---AGAHQ 789
                      *9...44444 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   2.9e-07   0.00074       4     145 ..     119     261 ..     118     276 .. 0.85
   2 !    6.0   0.1    0.0043        11      22     138 ..     341     468 ..     316     470 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.9e-07
        Cnd1   4 alairtlgcirvpnlveylvepLrkrLkDe..dpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllp 98 
                 +la+ +++ +  +++ e+l+e++++ L  +  +  VRk aa+++++L   +++++  ++   ++ ++++D++  Vv ++ +++  +++  ++a     +
  CDO71573.1 119 CLALHAIANVGSQEMAEALSEDVHRLLISPtsENFVRKKAALTLLRLyrKHPEVIPAQEWALRIVSIMDDPDLGVVLSVASLILALAQDHPEAYSIAYQ 217
                 78999999999***************987622568************666778999999*****************99999999999999888877788 PP

        Cnd1  99 diisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprl 145
                 + + +l+        w qi+ l++L  y p+d+ + + +++ + + +
  CDO71573.1 218 KAVDRLNR---VPIPWLQIKLLRLLQIYPPSDDPTLQVMLQEVLQTI 261
                 88888883...5789**********9999999987777777776655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0043
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalne......... 110
                     +  +L+D+d  VR+ a+ ++  + +     +++ ++ el++ l+  +   ++  ++ +  + ek    +y+   d+i  l++a  +         
  CDO71573.1 341 HQGTIILSLRDKDISVRRRALDLLYSMCDV---DNSElIVGELLRYLKVADYGLREEMVLKIAILTEKY-ASTYKWYVDTILELLSAAGDhvgeevwyr 435
                 455566789***********9887776543...334447888999999999999999998888888886.57788777777777763333444455566 PP

        Cnd1 111 ......csewgqitilefLlsyipkdkqeaeslv 138
                        +e+ q +  +++++y ++ ++  eslv
  CDO71573.1 436 vvqivtNTEDLQAYAAKVVFEYLKSPSS-HESLV 468
                 6666669999999999999999999998.88876 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.084   2.1e+02      13      29 ..     151     167 ..     144     169 .. 0.86
   2 ?   -1.6   0.0       1.9   4.8e+03       7      29 ..     184     206 ..     181     208 .. 0.82
   3 ?   -3.5   0.0         7   1.8e+04       2      16 ..     258     272 ..     257     273 .. 0.79
   4 ?   -0.9   0.0       1.1   2.8e+03       5      28 ..     306     329 ..     304     331 .. 0.79
   5 ?    9.2   0.0   0.00064       1.7       6      29 ..     347     369 ..     343     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.084
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                 + +VR+ Aa++L +l++
  CDO71573.1 151 ENFVRKKAALTLLRLYR 167
                 578*********99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                 + + Dp+  V  ++a  + ala+
  CDO71573.1 184 SIMDDPDLGVVLSVASLILALAQ 206
                 55789999999999999999997 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7
                 HHHHHHHHT-SSHHH CS
        HEAT   2 lPlllkllsDpspeV 16 
                 l +++++++ ps +V
  CDO71573.1 258 LQTIMNNCNEPSRNV 272
                 788999999988766 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.1
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l + +s+++ +VR+  + ++++la
  CDO71573.1 306 LARFISSKETNVRYLGLDTMAHLA 329
                 4555799******99998888887 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00064
                 HHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgalae 29 
                 l  l+D++ +VR+ A+  L  ++ 
  CDO71573.1 347 L-SLRDKDISVRRRALDLLYSMCD 369
                 4.48*****************997 PP

>> Vitellogenin_N  Lipoprotein amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.8e-05     0.047     490     563 ..      97     173 ..      68     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
                     GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTS...S----S-HHHHHHHHHTTTTGGGT-HHHH CS
  Vitellogenin_N 490 eyipylaqklkeavekgdsekiqvylkaLgNlGhpeilkvlepyl...egkeevstfvRlaavlaLrnlakkaprkv 563
                     ++++ +++ +++++++++++   ++l+a++N+G +e+   l++ +     + + ++fvR +a l L +l +k+p+ +
      CDO71573.1  97 DFLRLVVNSIRKDLNDNNEIHNCLALHAIANVGSQEMAEALSEDVhrlLISPTSENFVRKKAALTLLRLYRKHPEVI 173
                     788999999*************************777777765544447899999*******************975 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31     8e+02      15      74 ..     154     211 ..     130     223 .. 0.85
   2 ?   10.7   0.3   0.00017      0.45       8      83 ..     310     384 ..     306     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.31
     RTP1_C1  15 vrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee 74 
                 vr ++ ++L +l +k+   +v+ +++ +  +++ + d+d  v L++ +++ aLa+ +pe 
  CDO71573.1 154 VRKKAALTLLRLYRKHP--EVIPAQEWALRIVSIMDDPDLGVVLSVASLILALAQDHPEA 211
                 77788888888888887..77777777777889999999999999999999999999875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevl.klLleey 83 
                 +++++  vr  gl ++++l+ + +  +++ i++   +++ +L+d+d  v   a  +L +++dv+++e +  +Ll++ 
  CDO71573.1 310 ISSKETNVRYLGLDTMAHLAARTD--NLEAIKTHQGTIILSLRDKDISVRRRALDLLYSMCDVDNSELIvGELLRYL 384
                 789999*****************9..89999999999999***********************98886525666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 5692.49
//
Query:       CDO71574.1  [L=868]
Description: hypothetical protein BN946_scf184911.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-28   99.1   0.0    6.2e-25   88.1   0.0    2.3  1  RasGAP    GTPase-activator protein for Ras-like GTPase
    2.8e-12   46.8   0.0    4.9e-12   46.0   0.0    1.4  1  C2        C2 domain
  ------ inclusion threshold ------
      0.018   15.5   0.0      0.057   13.9   0.0    1.8  2  PH        PH domain


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0     1e-28   6.2e-25       4     208 .]     382     558 ..     376     558 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 1e-28
      RasGAP   4 eliklEles.senpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelDPrkiyeelkkkkesktgkksessgkksekeaselek 101
                 el   E++   ++ n+l+r+n+v++k +e y+   +g+ +L++ ++  +++++  e+  +e+ P +i +                              
  CDO71574.1 382 ELADREVDGtLSSHNTLFRGNTVFTKTVELYMSW-YGMPFLEASIGATIRRLC-AEKVAIEVYPVRIGKG----------------------------- 449
                 4555788776889999******************.*****************9.*************988............................. PP

      RasGAP 102 vsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeei...lnligsflflrfliPaivnPklfglvdkqiseeqrrnLt 197
                   + +ekn+d+L++++ e++++I++   q+P ++R ++  ir++v+ +++  +++++    + +++f flrf++Pai+ P+lfgl+  +++   +r Lt
  CDO71574.1 450 -PKAIEKNVDILVSWCREFWNQIYEARTQCPPELRKLFEHIRKLVESRYRIPDDQNRelpWQSVSAFCFLRFIVPAILHPHLFGLLPGLPDVPVQRSLT 547
                 .67899****************************************999887777777689*************************9999********* PP

      RasGAP 198 liaKllqnlan 208
                 liaK++q+lan
  CDO71574.1 548 LIAKVIQSLAN 558
                 *********97 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   8.3e-16   4.9e-12       3     103 .]     187     303 ..     185     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 8.3e-16
                 EEEEEEEEESSSSS..........STTSS..........CEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEE.EESCHTTSEEEEEEEEECSSSTEEE CS
          C2   3 levtvieAknLpnk..........dkkgs..........sdpyvkvsldgkqkakTrviknslnPvWnekftf.evaeleeakLeveVfdndrlskddf 80 
                 +++t i+++nL             d              +d+y+++ ++g   ++T+v+k + +P W+e+f++ ++  ++ + Le+ V+ ++rlsk  +
  CDO71574.1 187 VDLTCIQGRNLGVTrplsdepavaD---LdakldadaidMDVYCEIFVNGVLCGRTTVKKGTGSPDWHERFVLaDL--PPFENLEIVVWREKRLSKPVI 280
                 6777888888844423333333331...03345566667**********************************333..47******************* PP

                 EEEEEEEGHHHHTTHHHHEEEEH CS
          C2  81 iGkveiplstllsgeeaegwypl 103
                 +G+v i l ++ +ge+ egw+p+
  CDO71574.1 281 VGTVVIVLVNFRRGEAVEGWFPV 303
                 *********************96 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.5e-06     0.057      10     102 ..      64     162 ..      49     164 .. 0.76
   2 ?   -3.9   0.0         3   1.8e+04       9      24 ..     242     256 ..     239     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.5e-06
                 ETSSSSCSEEEEEEEEETTE....EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE.......EESTSSS....TEEEEEEESSHHHH CS
          PH  10 kgsgkkkswkkrwfvLkdse....llyykndksekdkepkgsislsncevvevvatedpkrkfcfel.......riverng....srtyllqasseeer 93 
                  + + +++w+   + L ++e    l +y +d +  ++ ++  ++ ++++ v+    + ++r++c+ +       r     g    s+ +++q+++++++
  CDO71574.1  64 SS-TSAGQWRPARCKLVEEEegclLNIYVDDTILYRSIYMYLLNHTDIRAVH---RSLFDRRNCIGIfavagqmR-----GaaptSEPLYIQFEDQDSA 153
                 22.2333****9999998889**********888888888888888888887...45**********76444332.....255445************* PP

                 HHHHHHHHH CS
          PH  94 keWikaiqs 102
                 ++W++ ++s
  CDO71574.1 154 NTWLALLRS 162
                 ***998875 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
                 EETSSSSCSEEEEEEE CS
          PH   9 kkgsgkkkswkkrwfv 24 
                 kkg g    w++r++ 
  CDO71574.1 242 KKGTGSP-DWHERFVL 256
                 5555555.89999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6055.94
//
Query:       CDO71575.1  [L=291]
Description: hypothetical protein BN946_scf184911.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-60  205.1  19.8    1.4e-60  205.0  19.8    1.0  1  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0  19.8   7.7e-65   1.4e-60       4     248 ..      34     273 ..      31     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 7.7e-65
         ELO   4 sspkvpiliallYlllvllgpklmknrkpfklkalvilhnlflavlSavgfvgmvkallevlkkkglvdllckddssdegrlrngllaflvllfylsKf 102
                 s+p+ +  ++++Yl++++ ++ +mk+r+p+kl+ l+ lhn+fl+  S+++fv +++++l  l ++g + +lc     ++ ++ +++l f++++ y+ K+
  CDO71575.1  34 STPQEVYPALVAYLVIIFGIRAWMKDRPPYKLQFLFRLHNAFLSSGSLLLFVLILEEVLPHLWQNGPFFALC-----NP-AMFTERLQFYYMINYYFKY 126
                 6777788899*********************************************9988888899*******.....54.566666666666777**** PP

         ELO 103 vEllDTvflvlrkkqvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyllv 201
                 +El+DTvfl l+kk++ fLhv+HH++++ll++++l+ +ts+++v+i  +N++vH+imY+YYf +a ga+   ++wk+++T++Qi+Qf++ l++++++++
  CDO71575.1 127 IELVDTVFLALKKKPLAFLHVFHHSATALLCYTQLNGQTSVQWVVI-SINLLVHVIMYYYYFATAGGAR---IWWKKYLTTFQIVQFIIDLFIVYFATY 221
                 **************************************88777777.*****************88887...6************************** PP

         ELO 202 sytlkk........vgCdtsqtpkaairlnllyllslllLFlnffiksylkkkkk 248
                 sy++ +        ++C+ +   ++a+ +++ +l s+llLF++f+i++y k++ k
  CDO71575.1 222 SYYAATyfpnlptyGSCAGT---ERAALFGCGLLSSYLLLFIQFYIQTYKKPSGK 273
                 **9999*******999*777...89*************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2285.20
//
Query:       CDO71576.1  [L=434]
Description: hypothetical protein BN946_scf184911.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.061   13.5   2.4       0.16   12.2   2.4    1.7  1  HemY_N    HemY protein N-terminus
       0.18   10.6   1.5       0.27   10.1   1.5    1.1  1  Spc7      Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.4   1.8e-05      0.16      51     100 ..     371     420 ..     340     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
      HemY_N  51 rrrrrerkarealseGlialaeGdfarAekaaakaaklseapllayllaA 100
                   r+ e+ +r+a++eG  a++eG+   Aek++a a+ +++++   +++aA
  CDO71576.1 371 EMRQTEEEGRRAVEEGRHAVEEGRRVIAEKDLAIAEMRQAEEEHLRIIAA 420
                 56899***************************999877766434555555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5     3e-05      0.27     149     254 ..     310     422 ..     302     428 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3e-05
        Spc7 149 egleedkelLekqeeeldell.peleeekaeleee.leklqeaaeeles......idkeeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                  ++ +d+++L+  ++e+ ++   +l+e ++ l+e  le lq++++ +e+       +   ++e+r++ +e    +ee +  ++e ++ ++e++ +i+e+
  CDO71576.1 310 WQFVSDNKVLSWYNNEVRSVFdAKLVELYKVLREGvLEALQDRRA-VEEsrlviaEKDLAIAEMRQTEEEGRRAVEEGRHAVEEGRRVIAEKDLAIAEM 407
                 567889999999999997765157899999888762555666443.33336665344666778888888888888888888888888888888888888 PP

        Spc7 240 keqkseleeeiaeae 254
                 ++  +e+   ia+ +
  CDO71576.1 408 RQAEEEHLRIIAALK 422
                 888888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3128.76
//
Query:       CDO71577.1  [L=145]
Description: hypothetical protein BN946_scf184911.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 971.61
//
Query:       CDO71578.1  [L=3143]
Description: hypothetical protein BN946_scf184911.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-97  324.3   7.6    1.7e-92  309.2   0.3    5.1  4  VPS13_mid_rpt  Repeating coiled region of VPS13
    4.5e-67  226.3   0.0    3.1e-64  217.0   0.0    2.7  2  SHR-BD         SHR-binding domain of vacuolar-sorting associa
    1.8e-62  210.3  10.5    1.3e-46  158.7   0.1    4.1  4  VPS13_C        Vacuolar-sorting-associated 13 protein C-termi
      5e-50  170.5  12.5    2.4e-45  155.2   5.6    5.3  3  VPS13          Vacuolar sorting-associated protein 13, N-term
    3.9e-30  104.3   0.1    1.6e-29  102.4   0.1    2.2  1  Chorein_N      N-terminal region of Chorein or VPS13
    1.3e-09   38.3   0.0    1.4e-08   34.9   0.0    2.6  2  ATG_C          Autophagy-related protein C terminal domain
  ------ inclusion threshold ------
       0.12   11.9   2.0        0.3   10.7   2.0    1.6  1  SR-25          Nuclear RNA-splicing-associated protein
       0.85    9.9   2.5        1.5    9.1   1.1    2.2  2  DUF3040        Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> VPS13_mid_rpt  Repeating coiled region of VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.051   1.1e+02     199     231 ..     241     273 ..     213     275 .. 0.87
   2 !  309.2   0.3   7.4e-96   1.7e-92       1     235 []     568     803 ..     568     803 .. 0.99
   3 ?    4.3   0.1      0.01        24      14     113 ..    1159    1242 ..    1150    1254 .. 0.58
   4 !    8.3   0.1    0.0006       1.4     172     235 .]    1266    1333 ..    1252    1333 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.051
  VPS13_mid_rpt 199 alnlpkfkvsgelpslevnlsdkkykslmelid 231
                    + + p+f v+ +++++ v l d++y+++++l+d
     CDO71578.1 241 DKETPRFDVQLSFDEIGVLLDDNQYRDAISLVD 273
                    45789**************************97 PP

  == domain 2  score: 309.2 bits;  conditional E-value: 7.4e-96
  VPS13_mid_rpt   1 fetnPldekadqrlsiklrpleiiYdaetveevvkffkppksvlesvealssaasstleelkeqtragleyaleehktldlkidlqapliiiPesi 96 
                    fe+nPld++ad++ls+++r +ei+Y++ +ve+v+kf+kpp s+lesveal ++as+tle+l+++tr gleyal++hkt+d+k+dl+ap+ii+Pe++
     CDO71578.1 568 FEHNPLDGRADSALSVRMRYMEIVYHRGYVEAVYKFLKPPASQLESVEALLDVASQTLEGLRKETRIGLEYALQTHKTVDVKMDLNAPIIIVPEDV 663
                    9*********************************************************************************************** PP

  VPS13_mid_rpt  97 teeessllvlDlGhlsveselvdksaikeikskskqqyseedleeleelmYDkfslklsdtqvllgdsgedwkealsed.ssklhilepinlkltl 191
                    t+ + ++lv+D+Gh+s+ sel++k+ai++i++k+k+qy+eed+++le+ mYD+++++l+ +q+llgd+ +++ +al+++ +++lh+le++n++l++
     CDO71578.1 664 TSTKGKHLVVDAGHISIGSELASKEAIQQIHAKRKKQYTEEDYKHLESMMYDRLTVRLEAAQFLLGDDLDSCLKALRSNeRDNLHLLERTNFDLQV 759
                    *****************************************************************************777999************* PP

  VPS13_mid_rpt 192 eksivpkalnlpkfkvsgelpslevnlsdkkykslmelidtsiP 235
                    ++sivp+a++l++fk++g+lp l+vn+sd+kykslm+lid++iP
     CDO71578.1 760 QNSIVPTAYTLARFKIAGHLPALQVNMSDTKYKSLMRLIDVAIP 803
                    *******************************************9 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.01
  VPS13_mid_rpt   14 lsiklrpleiiYdaetveevvkffkppksvlesvealssaasstleelkeqtragleyaleehktldlkidlqapliiiPesiteeessllvlD 107 
                     +s++  +l++ Y  + ++  + ff +  + + +++a ++aa ++ +e+                ++++++++  p+++ P + ++ + ++l l 
     CDO71578.1 1159 ISLTTGSLKVHYLEHSLHDAYLFFMKLAKLKGLYDAATEAAVQKASEIE---------------RMQFNVSISTPIVVFPADAQR-SLDVLTLR 1236
                     5555555666666666666666665555555555555555555555554...............445555566666666665554.55566666 PP

  VPS13_mid_rpt  108 lGhlsv 113 
                     lG+l+ 
     CDO71578.1 1237 LGSLKA 1242
                     666555 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0006
  VPS13_mid_rpt  172 ls.ed.ssklhilepinlkltleksiv...pkalnlpkfkvsgelpslevnlsdkkykslmelidtsiP 235 
                     l+ +d  s l+i++ i+++ ++ +s     +k+   p+++vs+++ +++++l+ ++y  l++l  +siP
     CDO71578.1 1266 LHyDDePSVLKIVDDIDIDAEVTQSGHidrTKDAIRPSTQVSVKISDVRLHLTQSQYCLLIALS-QSIP 1333
                     44322257799***********99964222678899***************************9.7898 PP

>> SHR-BD  SHR-binding domain of vacuolar-sorting associated protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0021       4.7       6      35 ..    1834    1863 ..    1833    2020 .. 0.78
   2 !  217.0   0.0   1.4e-67   3.1e-64       1     270 [.    2171    2468 ..    2171    2469 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0021
      SHR-BD    6 yapywllNkTglpLevrqednsneaagqle 35  
                  yapy + N+Tg+pL v +++   ++  +  
  CDO71578.1 1834 YAPYRIWNRTGYPLFVWSDTDGSHNVNETT 1863
                  9***************88776555544433 PP

  == domain 2  score: 217.0 bits;  conditional E-value: 1.4e-67
      SHR-BD    1 lkisIyapywllNkTglpLevrqednsneaagqleee......................eearsltpllfSfddrdtknraqlrignskwskpfsld 75  
                  +k+++y+py++lNkTglp+ v+++++ + + g++  e                      +   +  p++ S+  ++ k  a  ++g+s ws+++sld
  CDO71578.1 2171 FKVQVYSPYIILNKTGLPFAVSPSRSRVGSPGEIAGEtrpgtmphwhahkcngeltslvDVLAKPVPFMVSHPVENGKDFA-FKVGDSTWSQSISLD 2266
                  589*****************************987668******************9987667788999999998877777.9************** PP

      SHR-BD   76 aigetnevelrsaek.esevyiGisveegrgkykltkiVtiaPRyilkNklsekleiaqrgs..kkvielkpgeliplhwlrnkeekelvirlpesn 169 
                  a++++++++++ +++ ++e+++G+s +eg gkykltk++t+aPR+i+kN+ s++l++++ g   ++  +++pge  plh+lr   ek l i +p+ n
  CDO71578.1 2267 APTAETRLVIPHQTQkSEEIHVGLSWTEGLGKYKLTKVITLAPRFIIKNNFSQPLAFREHGVapRGRATIDPGEKRPLHFLRIGDEKLLTIAMPGLN 2363
                  ***********99998999*******************************************988899***************************** PP

      SHR-BD  170 sqwSggfnisdvgslyvklrrq..nseqvllkveiiledatifikiedaeknewPfsirNeseveilfyqrdpelnsd...eskplkytlppksvmp 261 
                   qwS+++n++d+gs++++l+    ++++ l++ +++ e+ tifi +++a++  wPf i+Nes+ +++f q+d+++++      +  +yt+ +ks++ 
  CDO71578.1 2364 AQWSAPINLEDIGSVHFRLYASenDQRMWLMRADVKIEGPTIFIFLNEATEG-WPFTIENESDYPLSFSQTDQSRKEGgiaPKPTPTYTVASKSSLD 2459
                  *******************994459***************************.******************9999999887335689********** PP

      SHR-BD  262 YawDePtak 270 
                  YawD+P+a+
  CDO71578.1 2460 YAWDYPAAR 2468
                  ******985 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.2   4.8e+03      17      68 ..    2539    2598 ..    2537    2604 .. 0.65
   2 !  158.7   0.1   5.6e-50   1.3e-46       1     139 [.    2721    2857 ..    2721    2864 .. 0.95
   3 !   39.5   0.2   2.1e-13   4.7e-10     138     177 ..    2874    2913 ..    2866    2914 .. 0.93
   4 !   16.7   0.5   2.2e-06    0.0049     107     168 ..    2939    3001 ..    2937    3005 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.2
     VPS13_C   17 sfslsekknkeesleke.....qsllslllllnslgvtltn...iddapikLnalelenv 68  
                  s++++++++++++  ++     + +l++ l l+ +gv+l n   ++ + + Lnal+ e++
  CDO71578.1 2539 SLTRQDSMSSSQDAFEAvqetvSPVLTVALDLQGIGVSLINrrmVEVVYLSLNALKFEYA 2598
                  445555555544443336666677888888899999999985556677788888888765 PP

  == domain 2  score: 158.7 bits;  conditional E-value: 5.6e-50
     VPS13_C    1 kiYfeklhlqPiklhlsfslsekknkeeslekeqsllslllllnslgvtltniddapikLnalelenvflslesliekikkhYsqqllkqlykilgs 97  
                  ++Yfe+l+lqPikl++sf+++e+ + e++l + +++++++  ln+++++++n++dap+++nal +++++l+l++l e+i++hY+q++l+qly+ilgs
  CDO71578.1 2721 DLYFEVLELQPIKLSISFMRTERVSGEDKL-SLRNPIAVV--LNAVTMAVGNVNDAPLEMNALAIKDMRLTLPDLEERIMHHYRQEILRQLYRILGS 2814
                  58***********************99865.468888888..******************************************************* PP

     VPS13_C   98 ldvlGNPvglfnnissGvkdlfyePiqglvkg.peefgeglak 139 
                  +d++GNPvglfnn+ssGv+d+fyeP++g+v++ ++e+g+g+ak
  CDO71578.1 2815 ADFIGNPVGLFNNVSSGVADIFYEPFNGVVMHgNKEIGIGIAK 2857
                  *******************************99********98 PP

  == domain 3  score: 39.5 bits;  conditional E-value: 2.1e-13
     VPS13_C  138 akGaksLvkktvfGvadsvskitgsvskglaaltmDeeYq 177 
                   +Ga+s+vkktvfG++ds++k+t sv+kgl+a t+D+eYq
  CDO71578.1 2874 HQGAASFVKKTVFGFSDSLTKFTSSVGKGLSATTFDSEYQ 2913
                  79*************************************9 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2.2e-06
     VPS13_C  107 lfnnissGvkdlfyePiqglvkg.peefgeglakGaksLvkktvfGvadsvskitgsvskgla 168 
                  l +++ sGv+  + +Pi+g+ ++  + f++g+ kG    v+k v Gv d +s++++ + ++ +
  CDO71578.1 2939 LASSVVSGVEGVVLKPIEGAESEgAKGFFKGVGKGLIGVVTKPVIGVLDLASNVSEGIRNTTT 3001
                  778999**************9988******************************999887765 PP

>> VPS13  Vacuolar sorting-associated protein 13, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   5.6   1.1e-48   2.4e-45       3     235 ..     146     341 ..     144     342 .. 0.92
   2 ?    2.1   0.1     0.064   1.4e+02     115     170 ..     744     800 ..     682     832 .. 0.71
   3 !    9.3   0.0   0.00041      0.91     120     171 ..    1277    1332 ..    1147    1340 .. 0.72

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 1.1e-48
       VPS13   3 esLiakIldNlqvtiknvHiryeDslsvpgrpfalGitLesLsaqstdenwkptfikgeeseekivyKlvelesLavYwdsdssedksledlsleelee 101
                 +sLi+kI++Nlqvt                +pfa+G tL+ ++a s++enw+p+fi++   ++++v+K++                     l+ +e++e
  CDO71578.1 146 ASLITKIINNLQVT----------------HPFAAGATLAGFTAFSVNENWQPAFIDS---KAGVVHKSLA-------------------GLPYQEFVE 206
                 56777777777764................9***************************...9999999753...................34556799* PP

       VPS13 102 afessikeksekakrhqYiLkPvsgeaklklnkkgetdapklkldleldevgltLseeqyrdilklleslsrlerreeyrklrPkvsv..kenpraWWk 198
                 +f+  i++ + +  +hq+iLkPvsge+k+ +n+k ++++p+++++l +de+g+ L+++qyrd+++l++ +++++r+++y+++rP  ++  k++pra +k
  CDO71578.1 207 KFTALISKGN-RLAKHQFILKPVSGEGKIIMNHKLDKETPRFDVQLSFDEIGVLLDDNQYRDAISLVDMYHFYTRQHQYQRYRPPPEEfeKNRPRALLK 304
                 ******8776.4688********************************************************************8877778********* PP

       VPS13 199 YaikavleeirekrrkwsweaiaerrdlrkrYvelyk 235
                 +a +a+l+e+re+rr+w+w+++aerrd+r rYv+l+k
  CDO71578.1 305 FATTAILDEVRERRRRWTWDYFAERRDDRHRYVDLFK 341
                 ************************************8 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.064
       VPS13 115 krhqYiLkPvsgeaklklnkkgetd.apklkldleldevgltLseeqyrdilklles 170
                 ++   +L+ ++++++++ +   ++    ++k++ +l  +++++s+++y+++++l++ 
  CDO71578.1 744 RDNLHLLERTNFDLQVQNSIVPTAYtLARFKIAGHLPALQVNMSDTKYKSLMRLIDV 800
                 4566788888888888666333333349**************************986 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00041
       VPS13  120 iLkPvsgeaklkln....kkgetdapklkldleldevgltLseeqyrdilkllesl 171 
                  i+  ++ +a+++++    +++++ +p  ++++++++v l+L+++qy  +++l +s+
  CDO71578.1 1277 IVDDIDIDAEVTQSghidRTKDAIRPSTQVSVKISDVRLHLTQSQYCLLIALSQSI 1332
                  8888999999977765435455558*********************9999998775 PP

>> Chorein_N  N-terminal region of Chorein or VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.1     7e-33   1.6e-29       5     115 ..      12     121 ..       9     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 7e-33
   Chorein_N   5 vskllnryLgeyvenldrdqlkvslwsGeveLenlkLkkealdklelPfevkegvigklrlkipwsnlkskpvvieiedvyllaeprseseeedeekee 103
                 +  l nr+L +yvenld +q++ ++ +G+v+L  l+Lkk aldk++lP++v++g++gkl+l++ w nl+++pv++ iedvyll++p+ses ++d e+ee
  CDO71578.1  12 LNILFNRVLAPYVENLDMNQVNYGIGQGQVTLSKLRLKKGALDKFRLPVDVIDGHLGKLSLSLHWMNLGNQPVEVLIEDVYLLVVPSSES-TYDPEEEE 109
                 56689*********************************************************************************9999.899999** PP

   Chorein_N 104 kreqaakkkkLa 115
                 +r+qaak ++L+
  CDO71578.1 110 RRAQAAKFERLE 121
                 *******99997 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.85   1.9e+03      38      82 ..     585     631 ..     573     634 .. 0.67
   2 !   34.9   0.0   6.4e-12   1.4e-08       3      83 ..    2920    3000 ..    2918    3009 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.85
       ATG_C  38 sevaeskgakgavkavvr..avPvavlrPligateavsktlqGvrnq 82 
                 ++ +e    +g v+av +  + P+  l+ + ++ +++s+tl G+r++
  CDO71578.1 585 MRYMEIVYHRGYVEAVYKflKPPASQLESVEALLDVASQTLEGLRKE 631
                 5555543334444444442234888999999*************986 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 6.4e-12
       ATG_C    3 lyasqPedlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnql 83  
                  ++ ++P+    G++ + + l + + s  + ++ +p+e aes+gakg++k+v + +  +v +P+ig+ + +s++  G+rn+ 
  CDO71578.1 2920 QRRNRPRHAIYGVTAGAEALASSVVSGVEGVVLKPIEGAESEGAKGFFKGVGKGLIGVVTKPVIGVLDLASNVSEGIRNTT 3000
                  67899**************************************************************************96 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.0   0.00013       0.3      19      79 ..     360     420 ..     356     443 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
       SR-25  19 krkksskdssrsssasksqsrkassasekeeerskekkkkkrrrsssssssssssssssss 79 
                 +rk s +d +  +s ++sq rk +++ +k ee++k+++ +k+ + ss    sssss s s+
  CDO71578.1 360 ERKLSYEDLRFYRSIARSQLRKDMATRRKLEEERKKQQPQKQASWSSWIWGSSSSSDSQSA 420
                 5788888888899999999999988887665555444444444344444444444444443 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.1   0.00067       1.5       2      36 ..     347     384 ..     347     393 .. 0.78
   2 ?   -3.1   0.0       4.4   9.9e+03      27      57 ..    2916    2940 ..    2909    2954 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00067
     DUF3040   2 pLsehEqrvLeeiEraLaaeDPklaaalrggaar...a 36 
                 pL  +E  vL+ +Er+L  eD ++ +++  ++ r   a
  CDO71578.1 347 PLAPQEVAVLDALERKLSYEDLRFYRSIARSQLRkdmA 384
                 68889***********************6666653322 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.4
     DUF3040   27 aalrggaararrrslrrlavlavllfvaGll 57  
                  +++      ++rr+++r a+ +v + + +l+
  CDO71578.1 2916 RRM------NQRRNRPRHAIYGVTAGAEALA 2940
                  444......2222223334444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.39u 0.32s 00:00:01.71 Elapsed: 00:00:00.54
# Mc/sec: 17671.00
//
Query:       CDO71579.1  [L=1268]
Description: hypothetical protein BN946_scf184911.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-18   65.2   0.0    1.8e-17   63.9   0.0    1.7  1  DENN          DENN (AEX-3) domain
     0.0013   19.0  11.6     0.0013   19.0  11.6    2.6  3  ATG16         Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.094   12.3   9.1       0.19   11.3   9.1    1.4  1  TMCO5         TMCO5 family
       0.14   12.6   2.6       0.27   11.7   0.2    2.9  3  EspB_PE       ESX-1 secreted protein B PE domain
       0.49   10.3   4.1        1.1    9.2   4.1    1.6  1  SLATT_1       SMODS and SLOG-associating 2TM effector domain 
       0.52   10.5  13.3        1.3    9.3  13.3    1.7  1  IFT20         Intraflagellar transport complex B, subunit 20
       0.71    9.7   2.7        1.5    8.6   2.7    1.5  1  PhosphMutase  2,3-bisphosphoglycerate-independent phosphoglyc
        1.6    7.2   9.2        2.5    6.5   9.2    1.2  1  Zw10          Centromere/kinetochore Zw10
        2.6    8.6  22.7      0.062   13.8  14.0    2.4  2  APG6_N        Apg6 coiled-coil region
          3    7.6  20.0      0.077   12.8   9.4    2.6  2  DUF724        Protein of unknown function (DUF724)
        9.9    5.6  13.5        1.1    8.8   7.5    2.1  2  Exonuc_VII_L  Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.1e-20   1.8e-17       8     184 ..     462     648 ..     458     650 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.1e-20
        DENN   8 ilsrlpffelfkkiLkalekrlkssskeaplesfianlllevplPapgktlklvs........laveekillqrpedselPl....edvdlkelfrcLs 94 
                 ++sr+p+++l++++L+  + r +++ +  +    i++ +l++p P+pg++++l             + +++ ++p   ++       ++ +++lf+cL+
  CDO71579.1 462 LVSRFPIYDLMRDYLTLSWARFSKDVQ--SHTLQISK-ILSHPAPRPGELVRLDAssatahggAETSLEVVARFPGGLDFGRglvdVNFTMWPLFKCLN 557
                 89*****************99999994..44445777.7777**********9766666543322333344455554444223445677788******* PP

        DENN  95 ienilqlfeavLl.ErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslldvl.eaPtPfiiGvesslleleekpledvvlvDld 184
                 i+nil+++e++L+ + ri+++S+++a+L  ++ ++  l+    W+++  + ++ + +++  + P P+iiG+  + +     p+ +v++vDld
  CDO71579.1 558 IDNILTICEIALApTGRILFFSRHPAMLGIAVMTIKYLVELRGWSGVALSAVHSRDAKIYiDDPGPWIIGLATEARY-AVRPPPEVCIVDLD 648
                 *************899**********************************99999888765**************99.999**********9 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.9       3.7   6.1e+03     105     121 ..      50      66 ..      28      83 .. 0.41
   2 !   19.0  11.6   7.9e-07    0.0013      98     196 ..     818     916 ..     732     918 .. 0.80
   3 ?   -2.5   1.3       3.1   5.1e+03      67      93 ..    1017    1049 ..     977    1066 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.7
       ATG16 105 lelneelqkleeklked 121
                   +++++  ++++++++
  CDO71579.1  50 GGASSSMLSKKTTTQQQ 66 
                 11111111111111111 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 7.9e-07
       ATG16  98 gelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENkeLveRWmkrkaqeA 196
                  +++q   +l++e ++l++k+++++++ ++l+++++    + ++++++l e ek++     El++++ +++++Ee++ ++ +E +  +eR ++++a + 
  CDO71579.1 818 MTFEQYAEKLSQEASELRSKINKEQRETKRLSSMITMTAAEKSKLQQQLSETEKAHLSALQELEQMRQTMEKMEEERAEMIAEVEAQIERALAHMAVDV 916
                 567888899************************************************************************************998765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.1
       ATG16   67 q......snskqsakiqsleqklaqlreelael 93  
                  q       ++  s+k+ + +qk++q++  l+ +
  CDO71579.1 1017 QqdgmkaVDEGISQKSDKIAQKVLQIQRKLESA 1049
                  011222222334455555556666666555554 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   9.1   0.00012      0.19       8     106 ..     820     918 ..     817     930 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
       TMCO5   8 lekdlqrldeaNqslLrkiqekeetiqslereitkldsllereedeeenfsenekedalkeLeletaklekkneiLlkevveLqkkisrkeskqd.dle 105
                  e+   +l ++  +l  ki++++ + ++l + it    +++ + ++++  +e+ +  al+eLe+    +ek  e   + ++e++ +i+r+  +   d++
  CDO71579.1 820 FEQYAEKLSQEASELRSKINKEQRETKRLSSMITM-TAAEKSKLQQQLSETEKAHLSALQELEQMRQTMEKMEEERAEMIAEVEAQIERALAHMAvDVD 917
                 56667789999999****************99998.566667777778889999999********************************9988766766 PP

       TMCO5 106 k 106
                  
  CDO71579.1 918 D 918
                 5 PP

>> EspB_PE  ESX-1 secreted protein B PE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.2   5.2e+03      50      72 ..      61      81 ..      52      82 .. 0.68
   2 ?   11.7   0.2   0.00017      0.27      26      68 ..     815     857 ..     790     866 .. 0.80
   3 ?   -2.7   0.0       5.2   8.5e+03      41      57 ..     879     895 ..     865     903 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
                HHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE 50 aageaErerLAesLrnaAkaYee 72
                +  ++++  L  sLr+aA+ Y++
  CDO71579.1 61 TTTQQQKSNL--SLRSAASGYSK 81
                5555555555..79****99975 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00017
                 SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE  26 dgLelakaaveqLnasAealrkylaageaErerLAesLrnaAk 68 
                 d++ + ++ +e+L+ +A +lr++++  ++E +rL+ ++  +A+
  CDO71579.1 815 DKFMTFEQYAEKLSQEASELRSKINKEQRETKRLSSMITMTAA 857
                 55666667799***************************99996 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.2
                 HHHHHHHHHHHHHHHHH CS
     EspB_PE  41 sAealrkylaageaEre 57 
                 + e++r++++  e+Er+
  CDO71579.1 879 ELEQMRQTMEKMEEERA 895
                 55788888888888875 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.1   0.00068       1.1      72     117 ..     864     907 ..     830     911 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00068
     SLATT_1  72 kqyeelaaaYslaaeeLeiiraaleaeateeewaklVadaEeaisr 117
                 +q++e+ +a+  a +eLe++r+++e  + eee a+++a++E  i r
  CDO71579.1 864 QQLSETEKAHLSALQELEQMRQTME--KMEEERAEMIAEVEAQIER 907
                 7999*********************..88999999****9998887 PP

>> IFT20  Intraflagellar transport complex B, subunit 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  13.3   0.00077       1.3      23     117 ..     805     899 ..     792     901 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00077
       IFT20  23 elkeeckeFvkkinefqklvkelievleelakkvekeKlkAigarnllkseakqreaeqqqlqaliaekkaeleRlrvelesLqkveqeqkelie 117
                  l +e++ + +k+ +f++  ++l++  +el +k++ke+ +      ++ + a ++ + qqql ++ +   + l+ l+   ++++k+e+e+ e+i+
  CDO71579.1 805 FLMTESDLWRDKFMTFEQYAEKLSQEASELRSKINKEQRETKRLSSMITMTAAEKSKLQQQLSETEKAHLSALQELEQMRQTMEKMEEERAEMIA 899
                 5678999999************************************************************************************7 PP

>> PhosphMutase  2,3-bisphosphoglycerate-independent phosphoglycerate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.7   0.00094       1.5      49     167 ..     792     912 ..     790     915 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00094
                   ----TT-EEEEEEEEEEC.....TTCEEETTGGG-.-TTHHHHHHHT-EEE..TTEEEEEEE-STTEEEEEE.--S-B--S--..SSTTS------B CS
  PhosphMutase  49 lelkpgdvafRcnlvtvdee...dgiiidrragristeeakeLikalneel.eegvevkfypgveyrhllvl.lsdkitdtdpphdkegkeikellp 140
                   le k g +  R n+   +++   d+ ++  +  +  ++ea+eL +++n+e  e   + ++ +++ + ++    l+++ ++t+ +h    +e++++  
    CDO71579.1 792 LETKIGRLSRRLNFLMTESDlwrDKFMTFEQYAEKLSQEASELRSKINKEQrE---TKRLSSMITMTAAEKSkLQQQLSETEKAHLSALQELEQMRQ 885
                   56677788899****998889999999999999999*************9976...6677777777777777999999******************* PP

                   S..SGGGHHHHHHHHHHHHHHHHHHHHS CS
  PhosphMutase 141 l.kseeaketaellnelieksqeiLedh 167
                   + + ++ +e ae++ e+ +++++ L++ 
    CDO71579.1 886 TmE-KMEEERAEMIAEVEAQIERALAHM 912
                   844.788*************99999875 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.2    0.0015       2.5      10     133 ..     790     908 ..     786     920 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0015
        Zw10  10 edlekkisklekkveeikeevskmivkkYseflelsssaeellerveslskeidalkkkveneieqdlkaaveelaelkqqlkeke.vvlellealkki 107
                 +dle+ki +l+++++ + +e s+      + f++  + ae+l ++ ++l + i+  +++ +    + +   + e  +l+qql e+e + l+ l++l+++
  CDO71579.1 790 DDLETKIGRLSRRLNFLMTE-SDLWR---DKFMTFEQYAEKLSQEASELRSKINKEQRETKR-LSSMITMTAAEKSKLQQQLSETEkAHLSALQELEQM 883
                 78888888888888777666.22222...3699999******************99999775.677888888999*******88762679********* PP

        Zw10 108 eealeelkealknkaflvaadlleel 133
                  + +e+++e   +  + ++ +++e++
  CDO71579.1 884 RQTMEKMEEERAE-MIAEVEAQIERA 908
                 *******998777.666666666665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  14.0   3.8e-05     0.062      25     107 ..     814     903 ..     796     917 .. 0.69
   2 ?   -1.1   1.4       1.6   2.6e+03      60      90 ..     989    1020 ..     978    1060 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-05
      APG6_N  25 rdaYeeflkklkkekkeeek.......qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                 rd++++f++  +k ++e+++       ++ e+++l   +  + +e+++l+++L e+ek++ +  +el++ +++ e++eee ++ + e  +
  CDO71579.1 814 RDKFMTFEQYAEKLSQEASElrskinkEQRETKRLSSMITMTAAEKSKLQQQLSETEKAHLSALQELEQMRQTMEKMEEERAEMIAEVEA 903
                 556666666666555554443446666445555555557888888899999999999999999999999999999999988888877655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
      APG6_N   60 ekeeeelleeLkelekereelea.elaaleee 90  
                  e+ e+e++e  ++++k++++  a ++ a++  
  CDO71579.1  989 EDPEAEAEEDVEKVQKAKKRFSAaDMDAQQDG 1020
                  45555555555555555555433023333333 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   9.4   4.7e-05     0.077      98     176 ..     832     911 ..     776     919 .. 0.85
   2 ?   -0.4   2.8      0.52   8.5e+02     105     150 ..    1005    1050 ..     994    1087 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.7e-05
      DUF724  98 lslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseae.kleeeled 176
                  +l+++ +k ++e+k+l + i+  ++ek+kl+++++e+ek+ l   ++l+++++ +e++++e a++ +e+e ++e++l +
  CDO71579.1 832 SELRSKINKEQRETKRLSSMITMTAAEKSKLQQQLSETEKAHLSALQELEQMRQTMEKMEEERAEMIAEVEaQIERALAH 911
                 5789999999999************************9999998888888888888888888888877654145555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.52
      DUF724  105 tklleerkklekkieeeesekrkleeeidelekkilelerqlallk 150 
                  +k++    +++ +    ++ ++ ++++ d++ +k+l+++r+l+++ 
  CDO71579.1 1005 AKKRFSAADMDAQQDGMKAVDEGISQKSDKIAQKVLQIQRKLESAL 1050
                  3333334445555555555566667777789999999999998765 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.5   0.00065       1.1     135     250 ..     782     906 ..     779     966 .. 0.54
   2 ?   -0.5   0.3      0.44   7.1e+02     149     201 ..     999    1048 ..     977    1097 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00065
  Exonuc_VII_L 135 Aelvvpdkaeleeqleelerrlekaikr......lleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelk.erlk.. 222
                   A++ v  +++le ++ +l+rrl+  +++      ++++ +q  ekl+++ ++ ++++++++++ ++l++ ++ + +++ +k +++l+e++ ++l+  
    CDO71579.1 782 ASAFVDARDDLETKIGRLSRRLNFLMTEsdlwrdKFMTFEQYAEKLSQEASELRSKINKEQRETKRLSSMITMTAAEK-SKLQQQLSETEkAHLSal 877
                   556677788888888888888888876533222233333333333333334444445444444444444444422222.222222222220222234 PP

  Exonuc_VII_L 223 ekleekkerlkklkerle.lleekkerle 250
                   ++le+++++++k++e+ + +++e + ++e
    CDO71579.1 878 QELEQMRQTMEKMEEERAeMIAEVEAQIE 906
                   45555555554443322223333333332 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.44
  Exonuc_VII_L  149 leelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerler 201 
                    +e++++  ++  +  ++ ++  ++++++ ++++++++++k  +++   ++le+
    CDO71579.1  999 VEKVQKAKKRFSAADMDAQQDGMKAVDEGISQKSDKIAQKVLQIQ---RKLES 1048
                    333333333333333333333333333333322222222211111...12222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2264  (0.126276); expected 358.6 (0.02)
Passed bias filter:                      956  (0.0533214); expected 358.6 (0.02)
Passed Vit filter:                       171  (0.00953762); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.50
# Mc/sec: 7589.73
//
Query:       CDO71580.1  [L=661]
Description: hypothetical protein BN946_scf184911.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-12   44.8  14.9    4.8e-09   35.7   4.9    2.1  2  Mg_trans_NIPA  Magnesium transporter NIPA
  ------ inclusion threshold ------
      0.016   15.4   6.5      0.016   15.4   6.5    3.5  3  EamA           EamA-like transporter family


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   4.9   5.3e-13   4.8e-09       5     161 ..      14     167 ..      11     179 .. 0.83
   2 !   14.5   2.4   1.6e-06     0.014     177     254 ..     268     344 ..     257     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 5.3e-13
  Mg_trans_NIPA   5 iGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGe.aanfaayafaPatLvtPLGalsvivsavlasllLke 99 
                    +G+++ +++s++ +  + +++k+++      e +         + +lW+ G+   +  +  + ++  a  P+++++PLGa+s++  a +a +lL +
     CDO71580.1  14 VGIVIGLLASFVQSLGLTIQRKSHVLNQSLPEDQQ----KVEHRRPLWLLGFAIFISSNlFGSLVQIASLPVVILAPLGAVSLLWNAFFARILLGD 105
                    68999999999999999999999975544433333....356799******977776652699999****************************** PP

  Mg_trans_NIPA 100 kLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvlily 161
                     + +  +lG ll   G++++ ++    e ++sl+ +  l+  paf++y  +  v v+v +++
     CDO71580.1 106 VFSVWMVLGTLLIAGGAVLIAVFGIVPEPTHSLEDLLRLFNRPAFVAYFSILGVFVFVWLVV 167
                    ***********************************************976654444443333 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.6e-06
  Mg_trans_NIPA 177 lcsllgsltvisvkalgiaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvi 254
                    +  +l+ + ++  k+    + lt++G++q+  ++aw+l+l+lv++  lq+  +n  l  f+   + Pv ++l+  l +
     CDO71580.1 268 ISGILSGMCLLFAKSGVELLLLTISGHNQFWRWQAWMLVLSLVVFALLQLCIVNG-LVYFDQFSLLPVSHLLLVGLGM 344
                    555555555555666556677899***************************9995.6678888888999988766544 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   6.5   1.8e-06     0.016      61     136 ..      52     126 ..      13     127 .. 0.77
   2 ?    1.0   0.2     0.049   4.4e+02      65      92 ..     149     176 ..     140     193 .. 0.75
   3 ?    0.2   7.8     0.087   7.8e+02      35      92 ..     270     329 ..     243     356 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-06
        EamA  61 lkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 ++  l+ll ++++ +   f+ ++  + ++++ + +++ +++ ++ ++++ +llg  ++++ +lg++li  G++li 
  CDO71580.1  52 HRRPLWLLGFAIFISSNLFGSLV-QIASLPVVILAPLGAVSLLWNAFFARILLGDVFSVWMVLGTLLIAGGAVLIA 126
                 44445555555554444444443.366789999*****************************************96 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.049
        EamA  65 llllllgllgtvlafllffyalkktsas 92 
                 ++++++++lg++++ +l ++ + + s +
  CDO71580.1 149 AFVAYFSILGVFVFVWLVVTHIVEYSYT 176
                 5789999999999999988877666655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.087
        EamA  35 fvrfliagill.....liiallkegklaklslkdwllllllgllgtvlafllffyalkktsas 92 
                 ++ + ++ ++      l+++ ++++++  +++++w l  +l+l+ ++l +l+++ +l + +  
  CDO71580.1 270 GILSGMCLLFAksgveLLLLTISGHNQ-FWRWQAWML--VLSLVVFALLQLCIVNGLVYFDQF 329
                 334444444445444556677777777.788887544..444444555555555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4781.26
//
Query:       CDO71581.1  [L=598]
Description: hypothetical protein BN946_scf184911.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4251.95
//
Query:       CDO71582.1  [L=898]
Description: hypothetical protein BN946_scf184911.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-51  173.0   0.0    2.1e-47  161.4   0.0    2.9  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.6e-33  113.6   2.0    3.6e-33  113.6   2.0    3.8  3  AAA_lid_9        AAA lid domain
    1.3e-26   92.4   2.9    1.4e-26   92.3   0.6    2.4  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.6e-23   83.6   0.0    1.3e-12   48.3   0.0    2.8  2  AAA              ATPase family associated with various cellul
    8.8e-14   51.7   0.0    2.1e-06   27.8   0.0    3.8  2  AAA_5            AAA domain (dynein-related subfamily)
    1.2e-13   51.0   3.9    1.6e-09   37.8   0.1    4.1  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    9.4e-12   45.6   2.4    5.1e-06   27.0   0.0    4.8  4  AAA_16           AAA ATPase domain
      2e-08   34.6   0.0      0.036   14.3   0.0    4.2  3  AAA_22           AAA domain
      6e-08   32.6   0.0    0.00012   21.8   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    4.5e-06   26.5   0.0     0.0022   17.7   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    4.1e-05   23.0   0.0      0.037   13.4   0.0    2.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    4.2e-05   22.9   0.2       0.32   10.2   0.0    3.0  3  TIP49            TIP49 P-loop domain
    9.7e-05   22.7   0.0          1    9.8   0.0    2.8  2  RNA_helicase     RNA helicase
    0.00014   21.4   0.0      0.084   12.3   0.0    3.6  2  TniB             Bacterial TniB protein
    0.00036   20.3   0.0       0.15   11.8   0.0    2.5  2  AAA_24           AAA domain
    0.00056   19.5   0.0       0.66    9.5   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
    0.00069   20.2   0.2       0.69   10.5   0.0    3.5  2  AAA_18           AAA domain
     0.0008   19.2   0.2        1.9    8.2   0.0    4.4  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0012   19.0   0.0        1.2    9.3   0.0    2.8  2  AAA_33           AAA domain
     0.0086   16.0   0.3        5.4    6.9   0.1    3.5  3  ATPase_2         ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.018   14.3   0.0        2.4    7.4   0.0    2.6  2  Zeta_toxin       Zeta toxin
      0.022   14.9   0.0       0.45   10.6   0.0    2.5  2  Torsin           Torsin
      0.042   13.8   0.0       0.97    9.3   0.0    2.5  2  NACHT            NACHT domain
      0.043   13.6   0.0         15    5.4   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
      0.048   13.7   0.0       0.48   10.4   0.0    2.4  3  ResIII           Type III restriction enzyme, res subunit
      0.051   13.5   0.0        4.6    7.1   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
       0.08   12.4   0.0        3.8    6.9   0.0    2.5  2  PhoH             PhoH-like protein
      0.083   12.9   0.0         14    5.7   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.097   13.2   0.1         20    5.7   0.0    2.9  2  ABC_tran         ABC transporter
       0.11   12.7   0.0        1.5    9.0   0.0    2.9  2  CRS1_YhbY        CRS1 / YhbY (CRM) domain
       0.17   12.1   2.9        8.8    6.5   0.0    3.5  3  AAA_28           AAA domain
       0.21   11.8   0.0        4.9    7.4   0.0    2.7  2  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.42   11.1  11.2         12    6.3   0.0    3.6  3  AAA_23           AAA domain
        0.9    8.8   8.3        1.7    7.9   8.3    1.3  1  DUF4407          Domain of unknown function (DUF4407)
          1    8.1   7.6        1.8    7.3   7.6    1.3  1  PV-1             PV-1 protein (PLVAP)


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0045       2.3       6     107 ..     212     320 ..     207     334 .. 0.73
   2 !  161.4   0.0     4e-50   2.1e-47       1     171 []     612     776 ..     612     776 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0045
                 EEEE--TTSSHHHHHHHHHHHTT-.........-EEEEEGGG-------THHHHHHHHHTTT.-HHHHTTS...EEEEETGGG-------------HHH CS
       AAA_2   6 illlgptgvGktelakalaellfv.....kkekkliradaselleeeevehlvsrligappg.yvgaeegG...ivllDEidKihpkessgadvSregV 95 
                   l+g+ gvGk+ +a+ la+ +       +   +l  +d+ +l+ + + +   ++ i +      +a+e+G   i+++DE+  i +    ga+  + + 
  CDO71582.1 212 PVLIGEPGVGKSAIAEGLAQRIVNrdvpaSLIARLYSLDMGALMAGAKYKGEYEERIKSVLNeVEKAAEDGpgiILFIDELHLIMA--GRGAEGGGMDA 308
                 5689999*********9999885467777777889999*******666666555555554330344566667889*****998888..66666666666 PP

                 HHHHHHHHH--E CS
       AAA_2  96 qrdLLqileggt 107
                  +++ ++l  g+
  CDO71582.1 309 ANLFKPLLARGK 320
                 666666665555 PP

  == domain 2  score: 161.4 bits;  conditional E-value: 4e-50
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rpi+s+l++gp+g+Gkt+++k+la +lf ++ +++ir+d se+ e    +h+++rligappgyvg+++gG            ivl+DEi+K+++     
  CDO71582.1 612 RPIASFLFAGPSGTGKTLMSKTLATILF-DSPDAMIRIDGSEYSE----KHSIARLIGAPPGYVGHDQGGqlteyirrkpysIVLIDEIEKASR----- 700
                 699*************************.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       + ++++Lq+l++g+ltd qgr vd++n+++Imt+++g++  +d  +     + +++e v+ +++ ++ pE+++R++ei
  CDO71582.1 701 ------EFYQLFLQVLDDGRLTDGQGRVVDFRNTVIIMTSNLGAAFLNDMGE--GPVKPETRELVMGAIRGHFPPEFINRIDEI 776
                 ......*******************************************666..59999***********************86 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1   5.4e+02      25      46 ..      11      32 ..       6      34 .. 0.88
   2 !  113.6   2.0     7e-36   3.6e-33       1     101 [.     355     455 ..     355     458 .. 0.97
   3 ?    0.4   0.2       1.2   6.2e+02      65      99 ..     479     513 ..     459     518 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.1
   AAA_lid_9 25 sdealeaavklSkrYisdrflP 46
                ++e l aa++l+k Y + +  P
  CDO71582.1 11 TQESLAAAIQLAKDYAHAQVHP 32
                6899***********9998877 PP

  == domain 2  score: 113.6 bits;  conditional E-value: 7e-36
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 s++eti+iLrg++ekye hHgv+i+d al aa++l++rY+++r+lPd+AIDl+Dea+a+vr+++e+ pe ++kl+++  +le e +ale+e++++++er
  CDO71582.1 355 SVAETISILRGIREKYEVHHGVRIHDGALIAAAQLAHRYLTSRRLPDSAIDLVDEACASVRVTRETAPEAIDKLQRRKLELEVEIHALEREKDEASKER 453
                 678*******************************************************************************************99999 PP

   AAA_lid_9 100 lk 101
                 l+
  CDO71582.1 454 LA 455
                 85 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.2
   AAA_lid_9  65 eskpeeleklekelaklekekealekeeekekaer 99 
                 +++ +e++++++++++l+ + +++e++ + + a++
  CDO71582.1 479 KRRGDEISAVRRRIDELKAKADEAERRYDLATASD 513
                 44567899999999999999999999887666655 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.6   2.8e-29   1.4e-26       1      81 []     782     862 ..     782     862 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2.8e-29
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    L+++++ kIvd++lk++++rl++r+++le++d+a+++l++ gy+p+yGARpL+r+iq+e+++pl+ +ils+++++g+tvrv
     CDO71582.1 782 LSRANVLKIVDIRLKEVQERLADRKMKLELDDAAKQYLMSIGYSPVYGARPLNRAIQQELLNPLSVMILSERIRDGETVRV 862
                    78999**************************************************************************97 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   2.5e-15   1.3e-12       2     126 ..     213     348 ..     212     353 .. 0.80
   2 !   32.3   0.0   2.1e-10   1.1e-07       2     110 ..     618     735 ..     617     743 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.5e-15
                 EEESSTTSSHHHHHHHHHHHH.......T..HEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTS..TS.EEEEEETGGGHHHHHTTCCCHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel.......g..vefleisgsell..skyvgesekkirelfkeakeka..kp.silfiDEidalaksrsgseseeeervv 86 
                 +l+G pG+GK+++a+ +a+ +       +  ++++++++  l+   ky ge e++i+ +++e+++ a  +p  ilfiDE++ ++  r  ++++ +++++
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRIvnrdvpaSliARLYSLDMGALMagAKYKGEYEERIKSVLNEVEKAAedGPgIILFIDELHLIMAGR--GAEGGGMDAA 309
                 599*****************644433321448899999999997778****************9999**999**************9..8888899999 PP

                 HHHHHHHHHTTTSSSTEEEEEEESS.....GGGSTHHHHSTTSSE CS
         AAA  87 nqLlteldgvkkkeskvivigatnr.....pdkldpallrgRfdr 126
                 n + + l + k       +igat+      + + dpal  +Rf +
  CDO71582.1 310 NLFKPLLARGKL-----RCIGATTLaeyrkYIESDPALE-RRFAQ 348
                 999999988766.....6899998755433445566666.57765 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2.1e-10
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHH.HHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgese.kkirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 l+ Gp GtGKTl+ k +a+ l      +++i+gse  +k            yvg+ +  ++ e++++   k  p si++iDEi++  ++          
  CDO71582.1 618 LFAGPSGTGKTLMSKTLATILfdsPDAMIRIDGSEYSEKhsiarligappgYVGHDQgGQLTEYIRR---K--PySIVLIDEIEKASREF--------- 702
                 89******************95433779*********999***********9987651566777754...3..559*********96655......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEES CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatn 110
                    + +l++ld+ +           +++++i+++n
  CDO71582.1 703 --YQLFLQVLDDGRLTdgqgrvvdFRNTVIIMTSN 735
                 ..778888888877777777777744466777766 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.3e-06    0.0012       3      75 ..     213     293 ..     211     346 .. 0.79
   2 !   27.8   0.0     4e-09   2.1e-06       2     122 ..     617     736 ..     616     755 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-06
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--..HHHHH--B--.........--------......G-SEEEEESGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtt..eedlkgrreikngttslvdsplvraar......egeilvlDEve 75 
                 +L+G+pG+gKs +ae la+++ nr v   ++ r ++     l  + ++k++ +++ +s+l  +++       g il++DE++
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRIvNRDVPASLIARLYSldMGALMAGAKYKGEYEERIKSVLN-EVEkaaedgPGIILFIDELH 293
                 79********************777766666664441145788888888555555555554.33335558889999999987 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 4e-09
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l  Gp+GtgK+ +++ la  l    + +  + ++++ ++  +   +    +     + + l++ +r    +i+++DE+e+a++e  + +l++l++ rl
  CDO71582.1 617 FLFAGPSGTGKTLMSKTLATILfdsPDAMIRIDGSEYSEKHSIARLIGAPpGYVGHDQGGQLTEYIRrkPYSIVLIDEIEKASREFYQLFLQVLDDGRL 715
                 6889******************96666666666777777777766666543333333446889888876679*************************** PP

                 E..-SSSEEE---......-EEEEEESS CS
       AAA_5  95 lleeggelvkaknddllerfrviatanp 122
                    +g+++v   ++     + +i+t+n 
  CDO71582.1 716 T--DGQGRVVDFRN-----TVIIMTSNL 736
                 *..66666655555.....799999986 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3    0.0042       2.1      27      52 ..      54      79 ..      18      79 .. 0.80
   2 !   37.8   0.1   3.1e-12   1.6e-09       1      53 []     105     155 ..     105     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0042
                TSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N 27 dGlaarlLkkaGvdldalrkaiekll 52
                 +l++++++kaG+d+ ++r+ ++kl+
  CDO71582.1 54 HSLFQSVIEKAGGDPVTVRRGLQKLI 79
                4688999************9999875 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 3.1e-12
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53 
                 A++l k ++++yi  +H+L AL++++   ++++Lk+a+++   l+ ai++++g
  CDO71582.1 105 AESLRKTMHDSYIAQDHILAALIKDP--SIQPVLKEANLTDTVLKTAIDQIRG 155
                 899***********************..***********************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   9.9e-09   5.1e-06       2      52 ..     190     237 ..     189     320 .. 0.78
   2 ?   -2.1   0.3       8.5   4.4e+03     108     108 ..     477     477 ..     407     546 .. 0.59
   3 !   10.8   0.0   0.00095      0.49      20      51 ..     609     641 ..     585     666 .. 0.72
   4 ?   -1.4   0.0         5   2.6e+03     132     158 ..     684     710 ..     658     722 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 9.9e-09
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg 52 
                 ++GR++e++++ ++l+r  ++ p   +l+Ge+GvGKs++++ l++++  ++
  CDO71582.1 190 VIGRDNEIRRVIRILCRRTKNNP---VLIGEPGVGKSAIAEGLAQRIVNRD 237
                 78**************8888766...899**************99988774 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 8.5
      AAA_16 108 v 108
                 +
  CDO71582.1 477 A 477
                 1 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00095
      AAA_16  20 rsgrp.elvllsGesGvGKsslvrellralekd 51 
                 +++rp  + l+ G+sG+GK+ + ++l++ l ++
  CDO71582.1 609 NANRPiASFLFAGPSGTGKTLMSKTLATILFDS 641
                 344558999*************99999877655 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 5
      AAA_16 132 rderp.lvlvlDdlqwadeaslql.laaL 158
                 r  +p  ++++D++++a  +  ql l+ L
  CDO71582.1 684 R--KPySIVLIDEIEKASREFYQLfLQVL 710
                 3..33379999999999998888855554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.1e-05     0.036       4     104 ..     208     296 ..     205     324 .. 0.67
   2 ?   -1.3   0.0       4.8   2.5e+03      37      70 ..     340     376 ..     324     415 .. 0.65
   3 !   13.8   0.0    0.0001     0.051      10     118 ..     619     712 ..     615     733 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.1e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 t++  v++Ge+G+GK+  ++ l+++ +        +++v    ++ + s++  + +   +++ e ++   + + +l+ +e+a+++     +l iDE + 
  CDO71582.1 208 TKNNPVLIGEPGVGKSAIAEGLAQRIV--------NRDVPASLIARLYSLDMGALMAGAKYKGEYEE---RIKSVLNEVEKAAEDGPG-IILFIDELHL 294
                 778889******************997........44444444444443333344445555544444...888888888888888888.8888888888 PP

      AAA_22 103 lr 104
                 ++
  CDO71582.1 295 IM 296
                 65 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.8
      AAA_22  37 e...erpevvfvtlpsstsskdllrellralglelka 70 
                     +r  +v+v+ ps  +  ++lr + +++++ +  
  CDO71582.1 340 PaleRRFAQVLVNEPSVAETISILRGIREKYEVHHGV 376
                 2445788888999999999999999999999976554 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 0.0001
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseea 108
                   G+sGtGKT+  ++l+  l         ++  ++++ ++ ++     + ++r +g +  +     ++   +l++++r++   ++++iDE+++  s e 
  CDO71582.1 619 FAGPSGTGKTLMSKTLATILFD------SPDAMIRIDGSEYSEK----HSIARLIGAPPGY---VGHDQGGQLTEYIRRKPY-SIVLIDEIEKA-SREF 702
                 67****************9942......2455557776666655....4568889988888...888888************.**********9.9998 PP

      AAA_22 109 leeLrsllnl 118
                 ++ + + l++
  CDO71582.1 703 YQLFLQVLDD 712
                 8888777764 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0038       1.9       2      50 ..     191     237 ..     190     296 .. 0.75
   2 !   21.8   0.0   2.4e-07   0.00012      18     139 ..     610     731 ..     588     743 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0038
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrke 50 
                      ig++++++++++ + +   t+ + ++ Ge G+GK+ +a+ + ++  +++
       CDO71582.1 191 IGRDNEIRRVIRILCRR--TKNNPVLIGEPGVGKSAIAEGLAQRIVNRD 237
                      56666666666665554..33444566***********99988666555 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2.4e-07
                      HCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHH CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplel 109
                      + +  +s l  G sGtGK+l+++++ +    +   +++++ ++++e+   ++L G   G + G ++  +   ++++   +++++Dei++ + e+
       CDO71582.1 610 ANRPIASFLFAGPSGTGKTLMSKTLATILFDSPDAMIRIDGSEYSEKHSIARLIGAPPG-YVGHDQGGQltEYIRRKPYSIVLIDEIEKASREF 702
                      34444889*******************999999***********************999.8888777665678999999*************** PP

                      HHHHHHHHHHSEEESBTSSSEEE--EEEEE CS
  Sigma54_activat 110 QekLlrvlqegevervGsskeikvdvriia 139
                       + +l+vl++g+++  G+ + +++   +i 
       CDO71582.1 703 YQLFLQVLDDGRLTD-GQGRVVDFRNTVII 731
                      **********99875.55555555444554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.4e-06    0.0022      45     106 ..     207     271 ..     193     276 .. 0.81
   2 ?    5.8   0.0     0.021        11      49      69 ..     616     636 ..     591     643 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.4e-06
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavraglsvlfvr...vedLveelkrarrdgklaralkrl 106
                 ++k+n vl+G +GvGKs +a  l+++ v++++  + +      d+ + ++ a+ +g++++++k++
  CDO71582.1 207 RTKNNPVLIGEPGVGKSAIAEGLAQRIVNRDVPASLIArlySLDMGALMAGAKYKGEYEERIKSV 271
                 57899************************998665543111468899999999999999988876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.021
   IstB_IS21  49 nivllGpsGvGKshlaialgv 69 
                 ++++ GpsG+GK+ ++ +l++
  CDO71582.1 616 SFLFAGPSGTGKTLMSKTLAT 636
                 68899*********9998875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0088       4.5      12      44 ..     198     231 ..     187     248 .. 0.74
   2 !   13.4   0.0   7.1e-05     0.037      24      49 ..     616     641 ..     584     666 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0088
  Mg_chelatase  12 kralei.aaaGgHnlllvGppGsGKtmlakrlps 44 
                   +r+++i +   + n +l+G pG GK+ +a+ l++
    CDO71582.1 198 RRVIRIlCRRTKNNPVLIGEPGVGKSAIAEGLAQ 231
                   5555552344567789*************98865 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.1e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllppl 49 
                   ++l++Gp+G+GKt++ k l+++l + 
    CDO71582.1 616 SFLFAGPSGTGKTLMSKTLATILFDS 641
                   689*******************9764 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0015      0.76      54      93 ..     213     251 ..     190     256 .. 0.81
   2 ?   -0.9   0.0       1.4   7.2e+02     273     290 ..     277     295 ..     255     296 .. 0.62
   3 !   10.2   0.0   0.00062      0.32      23      74 ..     583     638 ..     548     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
       TIP49  54 LlaGpsgtGktalaiaiskelg.edvpfvalsgsevyslev 93 
                 +l G++g Gk+a+a ++++ +  +dvp   ++   +ysl++
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRIVnRDVPASLIA--RLYSLDM 251
                 467****************9865899988774..6888777 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 XXXXXXXX.XXXXXXXXXX CS
       TIP49 273 gkaeivpG.vlfiDevhml 290
                   ae  pG +lfiDe h++
  CDO71582.1 277 KAAEDGPGiILFIDELHLI 295
                 34555677358******96 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00062
                 XXXXXXXXXXXXXXXXXXXXXXXX.XXXXX...XXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  23 eeglvGqkkareaagvivelikek.klaGr...avLlaGpsgtGktalaiaiskel 74 
                 +e++vGq +a +a++  ++l +++ + a r   + L+aGpsgtGkt ++ +++  l
  CDO71582.1 583 AESVVGQPEAVKAVANAIRLSRSGlRNANRpiaSFLFAGPSGTGKTLMSKTLATIL 638
                 579*****************988644455522256***********9987777665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0022       1.1       3      24 ..     214     235 ..     213     253 .. 0.88
   2 !    9.8   0.0     0.002         1       2      25 ..     618     641 ..     617     669 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0022
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l G++g+GKS +a+ La+++ +
    CDO71582.1 214 LIGEPGVGKSAIAEGLAQRIVN 235
                   78***************99974 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.002
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   ++ Gpsg+GK++++k+La+ l ++
    CDO71582.1 618 LFAGPSGTGKTLMSKTLATILFDS 641
                   588**************9988754 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00016     0.084      90     183 ..     254     350 ..     195     354 .. 0.74
   2 ?    2.4   0.0      0.17        87       1      53 [.     577     632 ..     577     638 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
        TniB  90 iLealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsarkq..reflnalksLgnelkipivlvGt.eealralrtDpqlasRFepia 183
                 +++  +++ + ++r+++  ++v +  ++    +L iDE+h ++ag+  +     + n+ k L  + k+  +++ t  e  + +++Dp l++RF ++ 
  CDO71582.1 254 LMAGAKYKGEYEERIKSVLNEVEKAAEDGPGIILFIDELHLIMAGRGAEGggMDAANLFKPLLARGKLRCIGATTlAEYRKYIESDPALERRFAQVL 350
                 444444555556666666666666667777779************99986226789***************99983466789***********9875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
        TniB   1 riayiradrwigyprakeilerLeeLley..pkrkrm.pnlllvGdsnnGKtmive 53 
                 r+++i a++ +g p+a +++++  +L +    +++r+  + l++G+s +GKt + +
  CDO71582.1 577 RMEKILAESVVGQPEAVKAVANAIRLSRSglRNANRPiASFLFAGPSGTGKTLMSK 632
                 66777777888888888888777777765433344544899***********8766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.02        10       3      26 ..     210     233 ..     208     292 .. 0.83
   2 !   11.8   0.0   0.00029      0.15       5      79 ..     617     700 ..     615     720 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.02
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkp 26 
                 ++ +++G++g+GK+ +a  l +++
  CDO71582.1 210 NNPVLIGEPGVGKSAIAEGLAQRI 233
                 56699**********999885555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00029
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtidelee 79 
                 +l  Gpsg+GKT + k+l   ++++d  + + ++d+ ++ + +s++ ++ +               +   ++y+++ iD i+++ +
  CDO71582.1 617 FLFAGPSGTGKTLMSKTL--ATILFDSPDAMIRIDGSEYSEKHSIARLIGAPPGYvghdqggqlteYIRRKPYSIVLIDEIEKASR 700
                 6779**************..777777777799999999997777777766655557888888888888888899999999999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.006       3.1      31      58 ..     207     234 ..     195     256 .. 0.79
   2 !    9.5   0.0    0.0013      0.66      35      58 ..     616     639 ..     607     666 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.006
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkld 58 
                 + k++ +l+G+ G+GK++i++ l +++ 
  CDO71582.1 207 RTKNNPVLIGEPGVGKSAIAEGLAQRIV 234
                 45667789************99877665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0013
       AAA_7  35 pvllvGptGtGKtviikdllkkld 58 
                 ++l+ Gp+GtGKt++ k+l + l 
  CDO71582.1 616 SFLFAGPSGTGKTLMSKTLATILF 639
                 689************999776555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0013      0.69       3      24 ..     214     236 ..     213     301 .. 0.61
   2 ?    5.6   0.0     0.044        23       3      21 ..     619     637 ..     618     701 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0013
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf 24 
                 l G pGvGK+ +a+ L++r  + 
  CDO71582.1 214 LIGEPGVGKSAIAEGLAQRIvNR 236
                 8899*************997444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.044
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                  +G++G+GKt ++k L+  
  CDO71582.1 619 FAGPSGTGKTLMSKTLATI 637
                 69************99865 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.069        35      36      57 ..     212     233 ..     188     258 .. 0.83
   2 ?   -0.5   0.0       1.8   9.2e+02      86      96 ..     285     295 ..     265     298 .. 0.80
   3 !    8.2   0.0    0.0036       1.9      14      55 ..     595     636 ..     578     658 .. 0.73
   4 ?   -0.6   0.0       1.9   9.8e+02      83     113 ..     685     715 ..     673     724 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.069
      RuvB_N  36 vllyGpPGlGkttlakiiakel 57 
                  +l+G PG+Gk+++a+ +a+ +
  CDO71582.1 212 PVLIGEPGVGKSAIAEGLAQRI 233
                 4689***********9998865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
      RuvB_N  86 dvlfideihrl 96 
                  +lfide+h +
  CDO71582.1 285 IILFIDELHLI 295
                 59*******76 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0036
      RuvB_N  14 kvkeklkifieaakkreealdhvllyGpPGlGkttlakiiak 55 
                 +v + +++  +  ++ ++++   l++Gp G Gkt ++k +a+
  CDO71582.1 595 AVANAIRLSRSGLRNANRPIASFLFAGPSGTGKTLMSKTLAT 636
                 3344455555566777889999************98888775 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.9
      RuvB_N  83 eekdvlfideihrlsraveevlysamedfrl 113
                 ++  +++idei + sr+  +++ + ++d rl
  CDO71582.1 685 KPYSIVLIDEIEKASREFYQLFLQVLDDGRL 715
                 567899**********999999999998765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.016       8.1       4      22 ..     214     232 ..     213     287 .. 0.83
   2 !    9.3   0.0    0.0023       1.2       3      31 ..     618     651 ..     617     701 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GKs  ae+l+++
  CDO71582.1 214 LIGEPGVGKSAIAEGLAQR 232
                 89**************975 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0023
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssd 31 
                 l+ G++G+GK+  ++ l+  l      +++++  
  CDO71582.1 618 LFAGPSGTGKTLMSKTLATILFdspdaMIRIDGS 651
                 799*************985444444444444444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.011       5.4       4      43 ..     193     232 ..     191     251 .. 0.85
   2 ?    4.7   0.0     0.048        25     102     131 ..     264     296 ..     248     328 .. 0.84
   3 ?   -2.1   0.0       5.7   2.9e+03      27      46 ..     621     640 ..     611     664 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 R++e++++ +il r +++  ++ G  g+GK+a+   ++++
  CDO71582.1 193 RDNEIRRVIRILCRRTKNNPVLIGEPGVGKSAIAEGLAQR 232
                 99******999999998888999*********87766655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.048
    ATPase_2 102 vfkaielllekikkkgkk...iiiiiDelqkli 131
                  ++ i+++l++++k +     ii++iDel  + 
  CDO71582.1 264 YEERIKSVLNEVEKAAEDgpgIILFIDELHLIM 296
                 478899999999999998999*******98776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.7
    ATPase_2  27 GpegsGKtaLlkeiienled 46 
                 Gp g GKt + k +++ l d
  CDO71582.1 621 GPSGTGKTLMSKTLATILFD 640
                 9*******888877776644 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.053        27      20      40 ..     213     233 ..     196     244 .. 0.82
   2 ?    7.4   0.0    0.0047       2.4      14      58 ..     611     657 ..     600     669 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.053
  Zeta_toxin  20 llgGqpGAGKselaellkdel 40 
                 +l G pG GKs++ae l++++
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRI 233
                 5669***********999987 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0047
  Zeta_toxin  14 erPklill.gGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 +rP++ +l +G +G GK+ +++ l++ l  + + ++r+d+ ++ e h
  CDO71582.1 611 NRPIASFLfAGPSGTGKTLMSKTLATILFdSPDAMIRIDGSEYSEKH 657
                 78887665499*************99998899********9998888 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.82   4.2e+02      59      91 ..     215     247 ..     208     280 .. 0.64
   2 ?   10.6   0.0   0.00089      0.45      15      79 ..     574     640 ..     566     645 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.82
                 EE-TTSSHHHHHHHHHHHHSTTGGGSTTEEEEE CS
      Torsin  59 hGwtGtGknfvaeiiaenlyrdGlrsdyvkkfv 91 
                  G +G Gk+ +ae +a+ + ++ + ++ +  + 
  CDO71582.1 215 IGEPGVGKSAIAEGLAQRIVNRDVPASLIARLY 247
                 599*************99987777666655444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00089
                 -HHHHHHHHHHH--S-HHHHHHHHHHHHHHHT.-SS-SS-EE.EEEEE-TTSSHHHHHHHHHHHHST CS
      Torsin  15 nleeLekdlekklfGqhlvkklvvksvkayle.nekpkkpLv.lsfhGwtGtGknfvaeiiaenlyr 79 
                 +l  +ek l+++++Gq  + k v ++++   +   ++++p++ + f G +GtGk  +++ +a  l+ 
  CDO71582.1 574 KLLRMEKILAESVVGQPEAVKAVANAIRLSRSgLRNANRPIAsFLFAGPSGTGKTLMSKTLATILFD 640
                 566789999******************95544155888888636789**************999886 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0019      0.97       4      31 ..     213     240 ..     211     272 .. 0.89
   2 ?    1.4   0.0      0.53   2.7e+02       5      23 ..     619     637 ..     616     644 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0019
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GK++ +++la+ +  ++ p+
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRIVNRDVPA 240
                 689****************999888876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.53
                 EEC-TTTCHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklala 23 
                   G++G GKT + + la+ 
  CDO71582.1 619 FAGPSGTGKTLMSKTLATI 637
                 67********999998875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.029        15      23      39 ..     210     226 ..     202     236 .. 0.82
   2 ?    5.4   0.0     0.029        15      24      39 ..     616     631 ..     606     644 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.029
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 ++ +l+G+ G+GKS++ 
  CDO71582.1 210 NNPVLIGEPGVGKSAIA 226
                 46799*********985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.029
      AAA_29  24 atlltGpsGsGKSTll 39 
                 ++l++GpsG+GK+ + 
  CDO71582.1 616 SFLFAGPSGTGKTLMS 631
                 489*********8665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.8     2e+03      23      71 ..     208     254 ..     192     289 .. 0.65
   2 ?   -1.8   0.0       5.5   2.8e+03     127     144 ..     274     295 ..     243     302 .. 0.69
   3 ?   10.4   0.0   0.00095      0.48       7      51 ..     588     641 ..     584     646 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.8
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl 71 
                  +++ ++  + G+GK+ +a  l++r+ +      + +++   sl   +l
  CDO71582.1 208 TKNNPVLIGEPGVGKSAIAEGLAQRIVNRDV--PASLIARLYSLDMGAL 254
                 45566678889******99999999887532..5555555555555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.5
                 HHHTTT-S....EEEEETGGGT CS
      ResIII 127 ellrdrfd....viiiDEaHrl 144
                 e ++ ++d    +++iDE H +
  CDO71582.1 274 EVEKAAEDgpgiILFIDELHLI 295
                 3333333344459999**9965 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00095
                 HHHHHHHHHT..............TTS...EEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII   7 yQeeaienlleklks........krdk...rglikmaTGtGKTlvaaklierllkk 51 
                  Q ea++++++++          +  +    +l++ + GtGKTl++  l+  l+ +
  CDO71582.1 588 GQPEAVKAVANAIRLsrsglrnaN--RpiaSFLFAGPSGTGKTLMSKTLATILFDS 641
                 588999999988876778887542..3456899*************8888877765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0089       4.6      99     122 ..     209     232 ..     179     242 .. 0.81
   2 ?    3.5   0.0      0.12        59     101     120 ..     616     635 ..     547     647 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0089
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++  vl+G+ GvGKS++ + l+++
   CDO71582.1 209 KNNPVLIGEPGVGKSAIAEGLAQR 232
                  45679***********99988876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.12
                  EEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinall 120
                    +++G+SG GK+ + ++l+
   CDO71582.1 616 SFLFAGPSGTGKTLMSKTLA 635
                  5689********98777765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.15        76      18      54 ..     208     244 ..     190     281 .. 0.70
   2 ?    6.9   0.0    0.0074       3.8      24      41 ..     619     636 ..     607     647 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.15
                 H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE CS
        PhoH  18 kndivfaiGpaGtGKtylavalavealkkkkvkriil 54 
                 +++  + iG+ G GK+ +a  la ++++++    +i 
  CDO71582.1 208 TKNNPVLIGEPGVGKSAIAEGLAQRIVNRDVPASLIA 244
                 45556789***********999999888877666665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0074
                 EE--TTSSTTHHHHHHHH CS
        PhoH  24 aiGpaGtGKtylavalav 41 
                  +Gp+GtGKt+++ +la 
  CDO71582.1 619 FAGPSGTGKTLMSKTLAT 636
                 68**********999886 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.067        34       8      44 ..     198     234 ..     192     256 .. 0.76
   2 ?    5.7   0.0     0.027        14      21      43 ..     610     638 ..     587     646 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.067
                 HHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   8 ealgkklakalgdvilLeGdLGaGKTtlvrglakalg 44 
                 +++ + l + +++  +L G+ G+GK++++ gla+ + 
  CDO71582.1 198 RRVIRILCRRTKNNPVLIGEPGVGKSAIAEGLAQRIV 234
                 5555556665567789*****************9974 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.027
                 E......EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  21 v......ilLeGdLGaGKTtlvrglakal 43 
                 +      +l+ G+ G+GKT +++ la  l
  CDO71582.1 610 AnrpiasFLFAGPSGTGKTLMSKTLATIL 638
                 133444599**************999765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.12        62      15      33 ..     213     231 ..     207     237 .. 0.85
   2 ?    5.7   0.0      0.04        20      16      51 ..     619     655 ..     613     719 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.12
                 EEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllag 33 
                 +++Ge G GKS +++ la+
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQ 231
                 79**********9987776 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.04
                 EEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp.teGeilldgkdlke 51 
                 + G++G+GK+ + k+la  l +     i++dg + +e
  CDO71582.1 619 FAGPSGTGKTLMSKTLATILFDsPDAMIRIDGSEYSE 655
                 68**************987655134456666666555 PP

>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       4.3   2.2e+03       6      32 ..     198     225 ..     194     230 .. 0.64
   2 ?    9.0   0.0     0.003       1.5       9      70 ..     529     588 ..     523     732 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4.3
   CRS1_YhbY   6 lrrLrhlairl.kpkvkiGkaGvtkevv 32 
                 +r  r l++r+ ++ v iG+ Gv k+ +
  CDO71582.1 198 RRVIRILCRRTkNNPVLIGEPGVGKSAI 225
                 5566677777733457788888777665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.003
   CRS1_YhbY   9 LrhlairlkpkvkiGkaGvtkevvdeiheklkteelvkvkc.egppalnmkrmaeiLeektgg 70 
                 L ++  + ++   +G + vt+e ++ei  ++ +  + ++   e   +++  rm +iL+e + g
  CDO71582.1 529 LEAKKAEEDAARGVGSDTVTPEQIAEIVARWTNIPVTRLMStE---KEKLLRMEKILAESVVG 588
                 55555555666679*************************9954...45578999999994433 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.017       8.8       3      24 ..     213     236 ..     211     290 .. 0.78
   2 ?   -1.9   1.0       6.9   3.5e+03      43      70 ..     415     443 ..     385     508 .. 0.59
   3 ?    3.9   0.0      0.11        58       3      20 ..     618     635 ..     616     650 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.017
      AAA_28   3 vitGgestGKTtlleaLaar..gy 24 
                 v++G ++ GK+ ++e La+r  + 
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRivNR 236
                 89****************986544 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.9
      AAA_28  43 edalpwv.edllafaervleeqleeeaaa 70 
                 + + + + e + ++++r le ++e +a  
  CDO71582.1 415 RVTRETApEAIDKLQRRKLELEVEIHALE 443
                 33333333333333333333333332222 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.11
      AAA_28   3 vitGgestGKTtlleaLa 20 
                  + G+++tGKT +++ La
  CDO71582.1 618 LFAGPSGTGKTLMSKTLA 635
                 689***********9998 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0096       4.9       3      28 ..     213     238 ..     212     287 .. 0.87
   2 ?    1.0   0.0       0.9   4.6e+02       3      26 ..     618     641 ..     617     660 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0096
                 EEESSTTSSHHHHHHCHCT-CCC-EE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfseke 28 
                 vl+G+ gvGK+ +++ + ++ ++++ 
  CDO71582.1 213 VLIGEPGVGKSAIAEGLAQRIVNRDV 238
                 79***********9999988777665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.9
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                 ++ G sg+GKt + k + +  f++
  CDO71582.1 618 LFAGPSGTGKTLMSKTLATILFDS 641
                 578********9999988777754 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.9   9.8e+02      23      39 ..     213     229 ..     208     232 .. 0.88
   2 ?    2.3   8.0      0.41   2.1e+02      90     197 ..     414     531 ..     358     538 .. 0.58
   3 ?    6.3   0.0     0.024        12      22      78 ..     617     685 ..     615     746 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.9
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 +++G+ G GK++i + +
  CDO71582.1 213 VLIGEPGVGKSAIAEGL 229
                 67899********9987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.41
      AAA_23  90 iererelskkkgkttkka.klelleideleqfisellgskkiilnlilflgqer.....feefelkdkkerleelekeleeledekkllekl....... 175
                 ++ +re++ +  ++ +    + ++ei +le++ +e  + + +i +  +   +++     ++++++k++ +++ ++++ ++el++++++ e++       
  CDO71582.1 414 VRVTRETAPEAIDKLQRRkLELEVEIHALEREKDEASKERLAIARKAIADVDDQlkpllAAYEAEKRRGDEISAVRRRIDELKAKADEAERRydlatas 512
                 444555555544444433144566666666666666665555554444444444455556666667778888888888888888888888886665444 PP

      AAA_23 176 ....eqekekekeleeleeeleeilk 197
                             +l el+++l +++ 
  CDO71582.1 513 dlryY-------ALPELQNKLAQLEA 531
                 44440.......44444444444443 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.024
      AAA_23  22 tlItGpNGaGKTTildAiklaLygetprlsrksgr.gfeksdveiese...........gkvkayvelt 78 
                 +l+ Gp G+GKT     +  +L+  +  + r +g+  +ek++++   +           g+  +y++++
  CDO71582.1 617 FLFAGPSGTGKTLMSKTLATILFDSPDAMIRIDGSeYSEKHSIARLIGappgyvghdqgGQLTEYIRRK 685
                 89**********************988887777543556776663222445555555555555666655 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.3    0.0033       1.7     131     232 ..     428     539 ..     400     548 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0033
     DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk........gtgttgvaGkgpaakekkaqldaaqaelaelkakld.......atarlaa 214
                 l+ +  ele +i al++e d+a++++ a  ++a + +d +                +++g++  + ++ +d+++a+ +e++++ d       +  +l++
  CDO71582.1 428 LQRRKLELEVEIHALEREKDEASKERLAIARKAIADVDDQLkpllaayeA-----EKRRGDEISAVRRRIDELKAKADEAERRYDlatasdlRYYALPE 521
                 66777778888889999999998888888888888888766777554330.....33334444443344444444444444443355544468899999 PP

     DUF4407 215 lraelaeleaerakeraa 232
                 l+++la+lea++a+e aa
  CDO71582.1 522 LQNKLAQLEAKKAEEDAA 539
                 999999999999988776 PP

>> PV-1  PV-1 protein (PLVAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.6    0.0036       1.8     272     372 ..     396     499 ..     385     514 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0036
        PV-1 272 cdelPslmstkveelarslragiervarensdlqrqkleaeqslrasqeakekvekeaqareaklqaecarqtqlaleekaalrkerd...nlakelee 367
                  ++lP    + v+e   s+r+  e       +lqr+kle e  ++a + +k++++ke  a + k  a+   q +  l    a ++  d   ++++ ++e
  CDO71582.1 396 SRRLPDSAIDLVDEACASVRVTRETAPEAIDKLQRRKLELEVEIHALEREKDEASKERLAIARKAIADVDDQLKPLLAAYEAEKRRGDeisAVRRRIDE 494
                 57899999999************99999999***************************99999999999999885554444444443311133444444 PP

        PV-1 368 kkrev 372
                  k ++
  CDO71582.1 495 LKAKA 499
                 44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.46
# Mc/sec: 5924.73
//
Query:       CDO71583.1  [L=128]
Description: hypothetical protein BN946_scf184911.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.6   0.1    2.3e-08   34.0   0.1    1.3  1  zf-CHCC   Zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-CHCC  Zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.3e-12   2.3e-08       1      22 [.      95     116 ..      95     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.3e-12
                 SSEEEEEESSTTSEEEEEEEE- CS
     zf-CHCC   1 srrvaCdGgggalGHPrvyiel 22 
                 +r+++CdGggg+lGHP++yi+l
  CDO71583.1  95 GRKAVCDGGGGPLGHPKIYINL 116
                 589******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 926.14
//
Query:       CDO71584.1  [L=944]
Description: hypothetical protein BN946_scf184911.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-51  175.4   0.0    2.3e-51  174.7   0.0    1.3  1  Pkinase        Protein kinase domain
    7.5e-22   77.9   0.0    1.5e-21   76.9   0.0    1.4  1  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
       0.31   10.1   0.5       0.49    9.4   0.5    1.2  1  Pannexin_like  Pannexin-like TM region of LRRC8


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   3.9e-55   2.3e-51      24     264 .]      14     313 ..      10     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 3.9e-55
                 TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH.HHSS.--HHHHHHHHHHHHHHHHHHHHT CS
     Pkinase  24 gkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee..kdelylvleyveggeladlle.rkgs.lseeeakkiakqilegleylHsk 117
                 ++ vAvK++kk  +   +e k l+E++ l+ +  hpni+ ly++f    ++ely+v+e +eg+ l +l++ rkg+ l+   +++i++q+++gl+++H+ 
  CDO71584.1  14 KRLVAVKRMKKTWEGGWDECKKLKELESLRAIPyHPNIIPLYDFFLLpdTKELYFVFESMEGN-LYQLIKtRKGKpLAGGLVSSIFRQVVSGLHHIHES 111
                 689****************99***********************9854499**********66.999998766656*********************** PP

                 TEE-SS-SGGGEEEET....................TTE....EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase 118 giiHrDlKpeNiLide....................kge....lKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyell 191
                 g +HrD+KpeN+L+ +                    + +    +K++DFGla+e +s+ ++t++v t++Y+APEvl k+++ys++vD+W+lG i++el+
  CDO71584.1 112 GYFHRDMKPENLLVTTtglydyrpvspyatpdsppeS-DvvviIKLADFGLARETKSKPPYTEYVSTRWYRAPEVLlKSRDYSNPVDMWALGTIMAELV 209
                 ***************7578887777777777666541.26899*********************************9********************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS......................................-HHHHHHHHHHT-SSGC CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei......................................seeakdllkkllkkdpk 250
                 + +p+f+   g+     e+dq+ +i+++lg  + +  ++++                                         + ++ + + +llk+dp 
  CDO71584.1 210 NLRPLFP---GQG----EVDQVARICELLGdpCRDYGVDHR--GkplgggkwprgvkmaravgfqfpeipprdiyslfdrsvPVKLVECIADLLKYDPD 299
                 *******...555....899999999999955333333333..344799999999999**********************999999************* PP

                 CSTTHHHHHTSGGG CS
     Pkinase 251 kRltaeellqhpyl 264
                 +Rlt +++l+hpyl
  CDO71584.1 300 QRLTSKQCLEHPYL 313
                 ************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   2.5e-25   1.5e-21      27     200 ..      13     210 ..       4     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 2.5e-25
                  SEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  27 kevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLe 120
                   +  VavK +k++ +    + + l+e++ ++++  hpni+ l+ + +  ++++l++v+e ++ G+L + +++++ ++l    + s+  qv +G+++++
   CDO71584.1  13 GKRLVAVKRMKKTWEGGWdECKKLKELESLRAIpYHPNIIPLYDFFLlpDTKELYFVFESME-GNLYQLIKTRKGKPLAGGLVSSIFRQVVSGLHHIH 109
                  5678******988776532778899********************99989999*******96.8*********9999********************* PP

                  HTTEEEST-SGGGEEEEE.......................TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHHH CS
  Pkinase_Tyr 121 skklvHrdlaarNvLlse.......................nkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslkekk.ftsksDvWsfGv 193
                  +  + Hrd+   N L+++                         ++k++DfGLar+++++  y+    + ++ +W+ apE+l +++ ++   D+W+ G+
   CDO71584.1 110 ESGYFHRDMKPENLLVTTtglydyrpvspyatpdsppesdvVVIIKLADFGLARETKSKPPYT----EYVSTRWYrAPEVLLKSRdYSNPVDMWALGT 203
                  *************************************99877799***********7777776....556778877***9876655************ PP

                  HHHHHHT CS
  Pkinase_Tyr 194 llwEift 200
                  ++ E+++
   CDO71584.1 204 IMAELVN 210
                  ****987 PP

>> Pannexin_like  Pannexin-like TM region of LRRC8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   8.2e-05      0.49     199     262 ..     575     636 ..     546     642 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 8.2e-05
  Pannexin_like 199 slssesssseesseeesallkkkssvkskaekkvvekkssvsvL.dkkegeqAkalfekvrkfra 262
                    s+s    s+ + ++e    + + +++k  a+++  +++++ ++L +k ++eqA+a+ ek +++r 
     CDO71584.1 575 SRS---LSELSPMQEVPRDILDPKQRKNLAARMQRDAEKQRRLLaEKMQREQARAVMEKSKRIRD 636
                    222...2222222333333333334444444555555555555537889*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 6034.04
//
Query:       CDO71585.1  [L=305]
Description: hypothetical protein BN946_scf184911.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-40  138.6   4.1    4.5e-35  121.3   0.6    2.5  3  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    4.6e-39  133.0   0.5    2.9e-38  130.4   0.2    2.1  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    4.3e-15   55.6   0.1    8.7e-15   54.6   0.1    1.5  1  Pribosyltran    Phosphoribosyl transferase domain
     0.0024   17.3   0.1      0.004   16.6   0.1    1.5  1  UPRTase         Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.1   4.7e+03     109     150 ..      30      71 ..      22      88 .. 0.72
   2 !   18.4   0.0   3.8e-07    0.0017       3      40 ..     150     187 ..     148     192 .. 0.90
   3 !  121.3   0.6     1e-38   4.5e-35      75     183 ..     192     300 ..     187     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                     TT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHH CS
  Pribosyl_synth 109 rGaykiyvlathGllssdaprlleesaidevvvtntipheiq 150
                     r a++  + +t+  + ++  r +e+   d+v + nt   ei+
      CDO71585.1  30 RTAFQGKAEVTKSGVGESHVRIIESVREDDVYIINTGCGEIN 71 
                     556666666677777778888888888888888888666664 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.8e-07
                     GGEEEEESSGGGHHHHHHHHHHTT-EEEEE-------- CS
  Pribosyl_synth   3 rnavivakspgsakkatsyaerlrlglavihGeqkeae 40 
                      + viv+ + g ak+ats a+rl +  a+ h e+k+a+
      CDO71585.1 150 SDIVIVSPDAGGAKRATSMADRLGVDFALFHKERKKAN 187
                     5679*****************************99876 PP

  == domain 3  score: 121.3 bits;  conditional E-value: 1e-38
                     --EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHHH CS
  Pribosyl_synth  75 ltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllaea 169
                     + +vG v+ +iai+vdd+ d   ++  aa+ l e Ga k+y+++thG+ls +a +++e+s++++++vtnt+p+  +++rcski+ +di  +lae 
      CDO71585.1 192 MILVGHVKDKIAILVDDMADTCGTLCLAAQHLSEAGASKVYAMVTHGILSGNALKNVEQSSLEKLIVTNTLPQSENVARCSKIEVIDIGNVLAEV 286
                     789******************************************************************************************** PP

                     HHHHHHT---TT-S CS
  Pribosyl_synth 170 irrihngesmsylf 183
                     irr h+ges+s+lf
      CDO71585.1 287 IRRSHYGESVSKLF 300
                     *************9 PP

>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.2   6.4e-42   2.9e-38       1     116 []       7     127 ..       7     127 .. 0.96
   2 ?    0.7   0.0      0.11   4.9e+02      15      87 ..     167     236 ..     160     265 .. 0.63

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 6.4e-42
  Pribosyltran_N   1 lkifagssskeLaekiakrl....gvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgy 91 
                     +kif+g+s++eLae i kr         gka+v++   gE +v+i esvr++dv+ii++ + ++n++lme+++mi+a++ asakritaV+P ++y
      CDO71585.1   7 IKIFSGTSHPELAEIITKRCthsrTAFQGKAEVTKSGVGESHVRIIESVREDDVYIINTGCGEINTALMEVCIMIHACKIASAKRITAVLPLFPY 101
                     69*****************97766667789***************************************************************** PP

  Pribosyltran_N  92 srqdrk.ksrepisaklvaklLeaaG 116
                     +rqd+k ksr+pi+aklva++L+++G
      CDO71585.1 102 ARQDKKdKSRAPITAKLVANMLQKSG 127
                     ******999***************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
  Pribosyltran_N  15 kiakrlgvelgkakvsrfadgEikveiee.svrgkdvfiiqslskpvndnlmelllmidalrrasakritaViP 87 
                     + a+rlgv  +  + +r + +E++  i    v++k  +++     ++ d+   l+l ++ l++a a+++ a + 
      CDO71585.1 167 SMADRLGVDFALFHKERKKANEVSRMILVgHVKDKIAILVD----DMADTCGTLCLAAQHLSEAGASKVYAMVT 236
                     56666666666666666666666655555244444333333....34455677888888888888888777665 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1     2e-18   8.7e-15      21     124 ..     141     237 ..     136     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2e-18
                   EEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BS CS
  Pribosyltran  21 eilee.yngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpe 116
                   +++++ ++ +  v+v ++ gG  +a+ +ad+L+v +a   k+++ ++  + ++        l + +++k+ ++VDD+ dt gTl+ a+++L e+g+ 
    CDO71585.1 141 QYIRTnFDLSDIVIVSPDAGGAKRATSMADRLGVDFALFHKERKKANEVSRMI--------LVGHVKDKIAILVDDMADTCGTLCLAAQHLSEAGAS 229
                   455555888999****************************************9........9*********************************** PP

                   EEEEEEEE CS
  Pribosyltran 117 evriavlv 124
                   +v ++v +
    CDO71585.1 230 KVYAMVTH 237
                   **999876 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   8.9e-07     0.004     100     180 ..     180     259 ..     117     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.9e-07
     UPRTase 100 qreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvt 180
                 ++e ++++ +     L  +++++ ++l+D +  T g+++ a q+L e+g+ +   +v   + s +++k++ ++  +  +vt
  CDO71585.1 180 HKERKKAN-EVSRMILVGHVKDKIAILVDDMADTCGTLCLAAQHLSEAGASKVYAMVTHGILSGNALKNVEQSSLEKLIVT 259
                 44444443.444445888999**************************9999888899999999999999988766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2180.78
//
Query:       CDO71586.1  [L=468]
Description: hypothetical protein BN946_scf184911.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-19   69.6   2.3    4.5e-19   68.6   2.3    1.5  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   2.3   2.5e-23   4.5e-19       7     135 ..     136     276 ..     131     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 2.5e-23
                    ESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEET...........TTTEEEEETTSBHHHHHHHHHHHTTECSSG CS
  FAD_binding_4   7 peseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileide...........eegtatveaGvtlgdlvealaakglllgle 91 
                    +++  +++aa+r+a++++l+++v G+G++l+g ++a+g ++++++++++i  +d             ++ +t+++Gv++++++ea+ ak+++l   
     CDO71586.1 136 ARDDVDLQAAVRFAASHNLRLVVKGTGHDLSGRSTARGSFIIWTHNMKNITFHDTftpqgapqsdaHDHAITLGSGVQWQEAYEAVTAKNRVLVGG 231
                    677789****************************99********99***777777999999999888**********************9998766 PP

                    .GGTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEE CS
  FAD_binding_4  92 .pgsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGev 135
                      + g+ g +GG++++++++  s   Gl +dn l+++++ ++G+ 
     CDO71586.1 232 lSAGGTVGAAGGWVLGGGHSVLSPSFGLGVDNALQFTMISSNGTR 276
                    2444555689*********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3187.87
//
Query:       CDO71587.1  [L=673]
Description: hypothetical protein BN946_scf184911.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-32  110.1   1.5    7.9e-32  109.4   1.5    1.3  1  DCP2      Dcp2, box A domain
    7.4e-13   48.7   0.0    1.5e-12   47.7   0.0    1.4  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> DCP2  Dcp2, box A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   1.5   8.8e-36   7.9e-32       1      83 []      35     118 ..      35     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 8.8e-36
                 HHHHHHHHHHTTTS-HHHHTSHHHHHHHHHHHHHHHHHTHHHHTT.TS----HHHHHHHHHCCSCCCHHCCCHCHHHHHHHHHH CS
        DCP2   1 eiLddlavrFilnlpeeeleslerlffqleeAhWfYeDfvreknp.klpslklkeFaeklfekcpllkklkedvdeileefkeY 83 
                 e+L+dl++rFilnlpeeel s+er++fq+e+AhW+YeDfvre+np k+ps++lk+F+e lf++cpll++++ed+d+ +++f++Y
  CDO71587.1  35 EVLEDLSSRFILNLPEEELASVERVCFQVEQAHWYYEDFVREQNPsKFPSYTLKTFSEALFHACPLLAHWAEDHDKTFASFMQY 118
                 69******************************************966************************************9 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.7e-16   1.5e-12       4     118 ..     123     232 ..     120     244 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.7e-16
                 EEEEEEEEETT.SEEEEEEESSSSTTTEESSEEECBTTS.HHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSST CS
       NUDIX   4 ravgvvllnek.gevLlvrrskkpfpgWelPgGkvepgE.tpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfleevegelepn 99 
                 +  g+++ln+  ++++lv+   k  +gW +P+Gk+ + E +   +A+RE+ EEtG++  ++l+  ++++           + +i+++ +  v ++ + +
  CDO71587.1 123 PVCGAIMLNDTwDKCVLVKGW-KSSAGWGFPKGKINEQEpKH-RCAIREVLEETGYNLeNQLDPENVIQ-------LSIKQQSISLYIVPGVPEDFPFE 212
                 55678877777577*******.99999************888.************98888888888553.......33336667766663444443333 PP

                 ..STTTEEEEEEEEHHHHHHH CS
       NUDIX 100 ..denevsevrwvpleellke 118
                    ++e+s++ w++l +l ++
  CDO71587.1 213 trTRKEISKIAWFRLSDL-PT 232
                 3699**************.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4822.64
//
Query:       CDO71588.1  [L=608]
Description: hypothetical protein BN946_scf184911.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   13.0   3.2       0.24   10.6   0.0    2.1  2  SLAC1      Voltage-dependent anion channel
       0.07   11.5   2.4         16    3.7   0.0    3.5  3  DUF3292    Protein of unknown function (DUF3292)
       0.14   12.5   0.0       0.29   11.5   0.0    1.5  1  PH_TFIIH   TFIIH p62 subunit, N-terminal domain
       0.15   12.1   0.6       0.61   10.0   0.0    2.1  2  Reticulon  Reticulon


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.4e-05      0.24     158     201 ..     166     207 ..     147     211 .. 0.74
   2 ?    2.0   1.2     0.023     1e+02      66     107 ..     335     377 ..     319     384 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.4e-05
       SLAC1 158 sqnpslqllgilvvslllwglGlllalvlfvlylyrlithklpp 201
                 s+++sl+   i+++ ++lw++Gll++  l++l+lyrl+ +k+ p
  CDO71588.1 166 SPSRSLSE-RIAFLYWVLWYHGLLFSG-LITLVLYRLVRRKIHP 207
                 24455444.5*************9985.6788999**9998876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.023
       SLAC1  66 rhpveslflgtfpmglltil..nglllvl.pgewlatlalvllW..i 107
                 r+p  s+f+g++++g++++    +    +  ++ +  la +++W  i
  CDO71588.1 335 RKPSASVFYGAILFGWFVLGllPA----TyLMRLVGFLAGAIFWhvI 377
                 5599999*****999966662211....1123444557777788633 PP

>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5     0.012        52     406     491 ..      43     125 ..      32     164 .. 0.60
   2 ?    3.2   0.0    0.0052        23     285     353 ..     311     374 ..     254     458 .. 0.72
   3 ?    3.7   0.0    0.0035        16     622     649 ..     579     606 ..     574     607 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.012
     DUF3292 406 PlPpppsskekppekpaelkdeelraeagedepld.aseeeleeaiepdeekakekeeekeeekekkkkkkkgskilgllkgttkgg 491
                 PlPp p++   pp+   +   +++++e +++ p+   + ee ++ai   ++k +e+   +e + ++  + ++ +++++l+ + ++++
  CDO71588.1  43 PLPPRPNTVVVPPQGEED--PRAVDSEDEQEVPMVtEDLEESSSAIDLLSTKDEEEL--SEVQLRELYDDEEIERFVHLFSTHVREV 125
                 899999997777776644..4455555555544441333444444444333222222..2344444455677788888887766654 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0052
     DUF3292 285 mrpvmhvladvaDtwErfaNaLsPtppFpkeaprlrlaavllplllvslfvssylvvklvtflvGfafF 353
                  r  + +l+++aD  Er++N++   +p  +  +     a+l   +++ l+  ++++++lv+fl+G+ f+
  CDO71588.1 311 KRVGLALLNETADFLERVKNIFLWRKPSASVFYG----AILFGWFVLGLLP-ATYLMRLVGFLAGAIFW 374
                 34568899999*********99888887766664....4444444444443.44578999999999886 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0035
     DUF3292 622 gkeykltavklRdeLFNrLvaiggqkWe 649
                  ke k   v +Rd+LF rL + gg+ W+
  CDO71588.1 579 AKEAKFFFVGSRDDLFARLLSYGGRRWK 606
                 56666777899****************7 PP

>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.4e-05      0.29       3      42 ..     520     558 ..     518     563 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
    PH_TFIIH   3 kKkdGtLtltekrleWtpdasssapsvsiplseIknlqis 42 
                 k+++G +tlt +++ +tp  s s+ +++i+l+++++ + s
  CDO71588.1 520 KQHPGLITLTPTTVFFTPLLS-SRATLCIHLQDVTGVKKS 558
                 8999*************9544.6789*********99987 PP

>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8       0.4   1.8e+03     108     130 ..     174     196 ..     168     201 .. 0.77
   2 ?   10.0   0.0   0.00014      0.61      70     122 ..     304     356 ..     281     403 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.4
   Reticulon 108 kvalllyilsilgslfslltlly 130
                 ++a+l ++l++ g lfs+l  l+
  CDO71588.1 174 RIAFLYWVLWYHGLLFSGLITLV 196
                 578999********999875444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
   Reticulon  70 elseesvreladsllellnkalselrrlalgedlklflkvalllyilsilgsl 122
                 e++ee+++++  +ll++   +l+++++++l + +++++   ++l+   +lg l
  CDO71588.1 304 EVKEEDLKRVGLALLNETADFLERVKNIFLWRKPSASVFYGAILFGWFVLGLL 356
                 55555555555555555555555555555555555555444444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 3775.59
//
Query:       CDO71589.1  [L=717]
Description: hypothetical protein BN946_scf184911.g59, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-16   58.8   0.0    8.5e-16   58.1   0.0    1.3  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
    2.8e-11   42.5   0.0    5.4e-11   41.6   0.0    1.4  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   9.5e-20   8.5e-16       1      93 [.       1     114 [.       1     129 [. 0.89

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 9.5e-20
  Rad21_Rec8_N   1 Mfysqellsk.kgplakvW..................laAtl.ek....klskkeilevniekaveeIlnpeaplaLrlsgqLllGvvriyskkvky 73 
                   Mf+s +ll++  ++ +  W                  laAtl  k    kl k+++l+++i + ++ I++p +plaLrls++L++Gv+r+   k ++
    CDO71589.1   1 MFFSPDLLERrDSGYGLLWygswsvrtaactnaflrrLAATLgPKssfkKLPKRHVLTADIGQLCDLIIEPAEPLALRLSSNLMIGVARV---KQEL 94 
                   9********9889999***9999***99999999999999998778999****************************************9...7899 PP

  Rad21_Rec8_N  74 llsDceealekikkafksik 93 
                   +++D+++  + +kka++ i+
    CDO71589.1  95 FFTDVTTCYNALKKAVQDIS 114
                   999***********999775 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0     6e-15   5.4e-11      13      52 ..     678     717 .]     668     717 .] 0.92

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 6e-15
                 -----HHHHHHHHHHHHHHHHTSEEEEESSTT--EEEEE- CS
  Rad21_Rec8  13 agktRkeAArlFyelLvLatkgvIkvkQeaPYgdIlitlg 52 
                 a +tR++AA +Fy+ LvL+tk +I ++Qe PYg ++i+++
  CDO71589.1 678 ATSTRRVAAAAFYHCLVLSTKNLITLNQEVPYGALKIRVK 717
                 6789********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4698.22
//
Query:       CDO71590.1  [L=252]
Description: hypothetical protein BN946_scf184911.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-25   90.1   0.0    1.8e-25   89.5   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0     1e-29   1.8e-25       2     131 .]      63     209 ..      62     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1e-29
                 EEEEEEEEEEETT.SEEEEEEES..SSSTTT.E....E.SS.....EEECBTTS.HHHHHHHHHHHHHHSE....EE.EEEEEEEEEEEEEEEEEEEEE CS
       NUDIX   2 lrravgvvllnek.gevLlvrrs..kkpfpg.W....e.lP.....gGkvepgE.tpeeAArREleEEtGl....ea.ellellgrlhylapydgpygd 80 
                 l+ra++++++++  g++Ll++r+  k +fp+ W    + +P     + k+e+++  ++ AA R+le+E+G+    ++ ++ ++l+r+hylap+dg +g 
  CDO71590.1  63 LHRAFSAFVFRPSdGKLLLQQRAseKITFPDmWtntcCsHPlddfeQEKIEKDQlGVRVAASRKLEHELGIprsqTPvDEFQYLTRIHYLAPSDGLWG- 160
                 79******66666377****************98886358899999************************95555444666*****************. PP

                 EEEEEEEEEEEECSGCSSTSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHHH CS
       NUDIX  81 eheilyvfleevegelepndenevsevrwvpleellkeklaaesrkllpwl 131
                 ehe++y+++  ++ +++pn  ne++++++v+ +el +++++++s +++pw+
  CDO71590.1 161 EHEVDYILFLTKDVTVKPN-LNEIRDYKYVDKAEL-QAMFEDPSNSFTPWF 209
                 9*****************9.***************.**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1668.27
//
Query:       CDO71591.1  [L=201]
Description: hypothetical protein BN946_scf184911.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1438.90
//
Query:       CDO71592.1  [L=97]
Description: hypothetical protein BN946_scf184911.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 697.57
//
Query:       CDO71593.1  [L=408]
Description: hypothetical protein BN946_scf184911.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2743.70
//
Query:       CDO71594.1  [L=130]
Description: hypothetical protein BN946_scf184911.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-35  119.1   0.3    1.1e-34  118.8   0.3    1.1  1  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.3   6.3e-39   1.1e-34      13     102 ..      17     108 ..       5     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 6.3e-39
         MPC  13 k..tvhFWaPvlkwglviaglsDlkrpaekiSltqnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskkdekkea 102
                 +  ++hFW+Pv++wgl++a+l+Dl+++ e iS+++++aL  ++++++r+++ ++P+Nyll+a+++ +++++ +q+ R+++y+++ ++ekk +
  CDO71594.1  17 YffSTHFWGPVANWGLPLAALADLRKDEEVISGAMTTALASYSMVFMRFAWRVQPRNYLLFACHATNATAQSIQLGRFANYWYFGGREKKLK 108
                 3569********************************************************************************99997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 999.87
//
Query:       CDO71595.1  [L=843]
Description: hypothetical protein BN946_scf184911.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-65  221.1   0.1    1.9e-65  220.3   0.1    1.4  1  DNA_ligase_A_M   ATP dependent DNA ligase domain
    2.8e-46  158.0   0.9    6.6e-46  156.8   0.9    1.7  1  DNA_ligase_A_N   DNA ligase N terminus
      8e-27   93.8   0.0      2e-26   92.4   0.0    1.8  1  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
    0.00045   20.6   0.1    0.00085   19.7   0.1    1.6  1  RNA_ligase       RNA ligase
     0.0057   16.6   0.1        1.4    9.0   0.0    2.6  2  DNA_ligase_OB_2  DNA ligase OB-like domain
  ------ inclusion threshold ------
      0.032   12.5   0.0      0.072   11.4   0.0    1.6  1  eIF-3c_N         Eukaryotic translation initiation factor 3 s
       0.11   12.9   0.0       0.67   10.4   0.0    2.2  2  Salp15           Salivary protein of 15kDa inhibits CD4+ T ce


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   0.1   7.5e-69   1.9e-65       1     204 []     447     652 ..     447     652 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 7.5e-69
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEEE.ETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHH CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvhk.egdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfq 94 
                     pmLA+++k+i ++l+k+e+++f++E+KyDGeRaqvhk e++++ +fSR+++d+++++p+l+++l +++k+ +k ++ D+E+va+dk+tg+ +pfq
      CDO71595.1 447 PMLAKPTKAIGEVLDKFEGQKFTCEYKYDGERAQVHKlEDGTIAVFSRNSEDMSKKYPDLMEQLPRCIKEGTKTFVFDAEAVAIDKDTGKLMPFQ 541
                     9********************************************************************************************** PP

                     HHCHHHHCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEE... CS
  DNA_ligase_A_M  95 klasrkkkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKn... 186
                     +l++rk+k++kve++  ++++clf+FD+Lyl+ge+l+++ l +Rr+lL++ +++ ++++++a+s+++++++e++++lee++++g+EGl+vK+   
      CDO71595.1 542 ELSRRKRKDVKVEDI--KVRVCLFAFDLLYLNGEPLLQKDLTNRRALLKQHFQPVDGEFQFATSSDCETTDEIQAFLEESVKDGCEGLMVKMlhg 634
                     ***************..***************************************************************************776 PP

                     TT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 187 pdskYepgkrsknwlKvK 204
                       s+Y+p++r  nwlK+K
      CDO71595.1 635 ELSHYQPSRRTVNWLKLK 652
                     7799************99 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.9   2.6e-49   6.6e-46       1     173 []     197     377 ..     197     377 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 2.6e-49
                     BCHHHHHHHHHHCC.---HHHHHHHHHHHH.....HTS-..SHHHHHHHHHH....SS-CCCS------HHHHHHHHHHHHT--HHHHHHHHHHH CS
  DNA_ligase_A_N   1 pFaelaelfekieestkkrlekrailanff.....rkvesagpedlypalrL....llPdydgreygigesllakalaealglskkkikdalakv 86 
                     p+a+la++f+ ie+ t+kr+ek+++l++f+     r  ++ + ++l++a++L    l+Pdy g+e+gigesll+ka++e +g+s   +k++l+k 
      CDO71595.1 197 PYAALAKVFSLIEA-TTKRIEKTSLLTSFLllvirRR-AKGDTQSLTQAVYLcinrLCPDYMGIELGIGESLLIKAISESTGRSMSIVKADLKKE 289
                     799***********.899***********98777433.4467789****************************************999999**** PP

                     S-HHHHHHHHHCCHHHH------BHHHHHHHHHHHHH-.STTHHHHHHHHHHHHHHHS-HHHHHHHHHHHCT---SS--HHHHHHHHH CS
  DNA_ligase_A_N  87 gDlgevaeevlskrstlakkspltieevnelLdklaaa.gkgsedekkkilkkllkraspeEakyliriilkdlriglsektvldala 173
                     gDlg va++++++++tl+k+++lt+  v+++L+++a + g++s+++k++i++kll++++ eEaky++r ++++lrig +e+tvl ala
      CDO71595.1 290 GDLGLVAMNSKNSQKTLFKPKSLTLPTVFKSLREIALSsGHSSQNKKVAIITKLLASCQGEEAKYIVRSLEGKLRIGNAERTVLVALA 377
                     ***********************************9777***********************************************97 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     8e-30     2e-26       1      99 []     677     786 ..     677     786 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 8e-30
                     GGGSEEEEEEEEEE..TTEEEEEEEE-SS--HHHHHHHHHHHGGGEECTTCESS---HHHHTTEEE-TT-EEEEEESEEECTSSSTT........ CS
  DNA_ligase_A_C   1 rgglvgslllgvyd..dgkleyvgkvgtGfsdaeleelrkklkelerkkppfaekvpeeekrdvWvePelvveVkfaeitasgkyka........ 85 
                     r++++g++ll++yd  ++++++++k+gtGfsd+ l++ +++lk+le++ p+   kv    k+dvW+eP++v+eV  a+++ s+ y+a        
      CDO71595.1 677 RTNVYGAFLLACYDsdSEEYQTICKIGTGFSDEALQAHYETLKPLEMAAPRGDIKVGGA-KPDVWFEPKVVWEVLTADLSLSPIYTAaqglader 770
                     57899*********98888********************************97777665.788******************************** PP

                     ..EECT-EEEEE-TTS CS
  DNA_ligase_A_C  86 ..slRfPrfkrlReDk 99 
                       slRfPrf+r+R+Dk
      CDO71595.1 771 giSLRFPRFIRVRDDK 786
                     ***************8 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   3.3e-07   0.00085       2     148 ..     467     634 ..     466     694 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.3e-07
                 EEEEEEE-SSEEEEEEEETT..EEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH....ECCEEEEEEEES....SS......TTSS........... CS
  RNA_ligase   2 evvvtEKlDGtnfriylvke..vgvasRsqilpfgeekfkefkrwaaalrkklkekla..neelilyGElig...hsi....kygglpk.......... 79 
                 ++ ++ K DG+++++++ ++  + v+sR+++           ++++ +l+++l++ ++   +++++  E +    +      +                
  CDO71595.1 467 KFTCEYKYDGERAQVHKLEDgtIAVFSRNSED---------MSKKYPDLMEQLPRCIKegTKTFVFDAEAVAidkD-TgklmP-----Fqelsrrkrkd 550
                 688999************8889*******988.........2455666677777777799899*********5441.134441.....03333344567 PP

                 ..........EEEEEEEEEEE.CTTBECE--HHHHHHHHHCCTB..EEEEE.SSHHHHHCCC.......H.HHHTC--EEEEEESSS CS
  RNA_ligase  80 ..........efyvFdifdir.dkeeqrylspdevealakglgtvpvlyegkflaaeellel......ll.skgnkrEGlVikpese 148
                            +++Fd++ ++ +   q+ l+ +  +al+k++   pv +e++f ++++++++      l+ s +  +EGl +k  ++
  CDO71595.1 551 vkvedikvrvCLFAFDLLYLNgEPLLQKDLTNR--RALLKQH-FQPVDGEFQFATSSDCETTdeiqafLEeSVKDGCEGLMVKMLHG 634
                 88899999999*******998433333333332..2233322.457877777777777777787887423577889*******7654 PP

>> DNA_ligase_OB_2  DNA ligase OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00056       1.4       2      33 ..     673     710 ..     672     720 .. 0.77
   2 !    5.0   0.1      0.01        26      51      66 .]     766     783 ..     759     783 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00056
                      ...EEEEEEEEEEEEE.T......TEEEEE-SS--HHH CS
  DNA_ligase_OB_2   2 GkGkykgmlGallvetkk......gkrfkiGsGlsdaq 33 
                      GkGk  ++ Ga+l    +      ++  kiG+G+sd+ 
       CDO71595.1 673 GKGKRTNVYGAFLLACYDsdseeyQTICKIGTGFSDEA 710
                      9**********9988864223222334*********85 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
                      TT.SSSS.-EEEEEEEE- CS
  DNA_ligase_OB_2  51 lt.skgv.pRfPsflrvR 66 
                      l  ++g+ +RfP+f rvR
       CDO71595.1 766 LAdERGIsLRFPRFIRVR 783
                      554556679********9 PP

>> eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05     0.072     134     241 ..     143     341 ..      49     359 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXX........................................................................... CS
    eIF-3c_N 134 dPeeeeeeeeedededdegedeededeksvkateavkkases......................................................... 175
                 +Pe  +e                   e++ +a e++++  e+                                                         
  CDO71595.1 143 SPEDADE------------------GEDEIEAEEELEAEDEGaasknaeaalsktkevdlpggwkvgdpprvpyaalakvfslieattkriektsllts 223
                 2222222..................2222222222222222223333333444444456777889999******************************* PP

                 ..................................................................................XXXXXXXXXHHHHHHHH CS
    eIF-3c_N 176 ......................................................kvekeeeedeeteeeklskkekkekvkmfekkeeitvevvikklk 220
                                                                       +++ ++ + +++ +  l+  + k+++k + k++ +t ++v+k l+
  CDO71595.1 224 flllvirrrakgdtqsltqavylcinrlcpdymgielgigesllikaisestgrSMSIVKADLKKEGDLGLVAMNSKNSQKTLFKPKSLTLPTVFKSLR 322
                 ***************************************************998555555566666667778888888888999999************ PP

                 HHHHHHTSSSXXHHHHHHHHH CS
    eIF-3c_N 221 eilsaRgkkttdrseqielle 241
                 ei  + g  +++++  i   +
  CDO71595.1 323 EIALSSGHSSQNKKVAI--IT 341
                 *****999887766443..33 PP

>> Salp15  Salivary protein of 15kDa inhibits CD4+ T cell activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.84   2.2e+03      30      58 ..     312     350 ..     292     360 .. 0.67
   2 ?   10.4   0.0   0.00026      0.67       7     100 ..     373     491 ..     368     513 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.84
      Salp15  30 k..........nvgeklpdfigdckkelalkllkaCsek 58 
                            +++ +  + +++ k ++ +kll +C+ +
  CDO71595.1 312 LtlptvfkslrEIALSSGHSSQNKKVAIITKLLASCQGE 350
                 25666666666777777888888888999*******875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00026
      Salp15   7 lvlaglcfgeessssssdaeeskk.............nvgeklpdf...igdckkelalkllkaCsekk.........ksfkkinekkvdfknCtftCk 80 
                 lv++ +++  ++++ss++  +++k             +v  +lp++   i++  +   ++l + C+            k +k+i e++ +f+  +ftC+
  CDO71595.1 373 LVALAHAAVLAEQESSNKRLSNDKltsrleeaantikQVYSELPNYdlvIPALLDVGIDRLREVCKLTPgvplkpmlaKPTKAIGEVLDKFEGQKFTCE 471
                 4444444444444444444444446779999999888777777776222555555999*******8766*********99999**************** PP

      Salp15  81 ehneggteielrLpegtpCg 100
                  + +g+  +  +L++gt++ 
  CDO71595.1 472 YKYDGERAQVHKLEDGTIAV 491
                 888888888889*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 6019.58
//
Query:       CDO71596.1  [L=973]
Description: hypothetical protein BN946_scf184911.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 7066.74
//
Query:       CDO71597.1  [L=443]
Description: hypothetical protein BN946_scf184911.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.4   0.2       0.12   12.3   0.2    1.6  1  DUF3377   Domain of unknown function (DUF3377)


Domain annotation for each model (and alignments):
>> DUF3377  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.9e-06      0.12      19      68 ..     128     177 ..     122     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.9e-06
     DUF3377  19 iddeesgtvnaiaVvvPlvLllciLvliyailqfrrkgtprrllYckrSL 68 
                  dd++ + v+++  +vPl L+++i + ++ +l+  r  ++r+ l   rSL
  CDO71597.1 128 FDDNAFTIVSLVFTLVPLALAVFISASVVCVLRWSRVQSQRNALCSSRSL 177
                 58898888**********************************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3482.09
//
Query:       CDO71598.1  [L=161]
Description: hypothetical protein BN946_scf184911.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-28   97.3   0.5    6.9e-28   96.5   0.5    1.4  1  Ribosomal_S17    Ribosomal protein S17
    1.2e-24   86.5   0.1    2.2e-24   85.6   0.1    1.4  1  Ribosomal_S17_N  Ribosomal_S17 N-terminal
  ------ inclusion threshold ------
      0.029   14.4   0.6        5.9    7.0   0.1    2.3  2  OmdA             Bacteriocin-protection, YdeI or OmpD-Associa


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.5   1.2e-31   6.9e-28       1      67 [.      79     146 ..      79     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.2e-31
                    EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS.--TT-EEEEEEECECSSSEEEEEE CS
  Ribosomal_S17   1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdenns.vkvGDiVrieecrPlSktkrfvvv 67 
                    G+Vvs+km++T+++r+++l+++pky++y+kr+k++ ah ++ + v+vGDiV++++crPlSkt+rf+v+
     CDO71598.1  79 GRVVSTKMTRTIIIRRDYLHYIPKYNRYEKRHKNLAAHVSPAFrVEVGDIVTVGQCRPLSKTVRFNVL 146
                    9*****************************************************************97 PP

>> Ribosomal_S17_N  Ribosomal_S17 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.1   3.7e-28   2.2e-24      21      69 .]      29      77 ..      20      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 3.7e-28
                     -----....--------TT----GGGGS-----TTSSSSSS----S-EE CS
  Ribosomal_S17_N 21 eekkkkkkkkryvknvglgfktPkeAiegtYiDkKCPFtGnvsirGriL 69
                      +kk ++k+kr++k+vglgfktP+eAi g+YiD+KCPFtGnvsirGriL
       CDO71598.1 29 GGKKVATKEKRWYKDVGLGFKTPSEAIYGSYIDNKCPFTGNVSIRGRIL 77
                     455555566***************************************8 PP

>> OmdA  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00098       5.9      31      49 ..      21      39 ..      20      44 .. 0.91
   2 ?    5.5   0.1     0.003        18      30      54 ..      93     117 ..      89     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00098
        OmdA 31 reylrwiesaKrpeTRakR 49
                r +l +i++ K+ +T++kR
  CDO71598.1 21 RYVLSRIQGGKKVATKEKR 39
                56899*************9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.003
        OmdA  30 rreylrwiesaKrpeTRakRieklv 54 
                 rr+yl++i +  r e R k ++  v
  CDO71598.1  93 RRDYLHYIPKYNRYEKRHKNLAAHV 117
                 9*****************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1118.51
//
Query:       CDO71599.1  [L=497]
Description: hypothetical protein BN946_scf184911.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-38  132.8   0.0    1.4e-37  130.2   0.0    1.9  2  Metallophos  Calcineurin-like phosphoesterase
    3.9e-18   65.6   0.1    8.4e-18   64.6   0.1    1.6  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   1.5e-41   1.4e-37       2     201 ..     219     410 ..     218     413 .. 0.92
   2 ?    0.4   0.0     0.088   7.9e+02     148     187 ..     416     454 ..     411     487 .. 0.68

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 1.5e-41
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygyl 88 
                  ++ ++gD+H     gq++dl++l++ +  ++   ++l+l  GD+vdrg  + e++ l l++++kyp +++ll+GNHe        gf++e++++    
   CDO71599.1 219 PVKIVGDVH-----GQYSDLIRLFEMCgfPP-AANYLFL--GDYVDRGKQSLETILLlLCYKIKYPENFFLLRGNHEcanvtrvyGFYDECKRRCN-- 306
                  5789*****.....***********997444.4789999..*******6666666666************************************88.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                      ++w+++ +vfn+lp+a+++    k++++hGg sp l +s ++++++++++++p+ g   d++++d       + + ++ +  ++rg +y fg  
   CDO71599.1 307 ---LKTWKTFIDVFNCLPIAAIVAS--KIFCVHGGlSPSL-HSMEEIKRIQRPTDVPDYGllnDLLWSD-------PSDTAVDWEDNERGVSYCFGKA 391
                  ...789*******************..********65555.*****************99*********.......********************** PP

                  HHHHHHHHTTESEEEEESS CS
  Metallophos 183 aledllkkygvdlvisGHt 201
                  ++ d+l +y+ dl++++H 
   CDO71599.1 392 VINDFLVRYDMDLICRAHM 410
                  ******************7 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.088
                  HHHHHHHHHHTTCSEEEEEESSESS......CSSSCSCCHHHHHHH CS
  Metallophos 148 dewlkdlekrekadwvivlgHsply......rgsgylfgdealedl 187
                  +e+++d       +++++++  p+y      +g++ + ++e l+ +
   CDO71599.1 416 YEFWND-------RTLVTVFSAPNYcgefdnYGACMSVSEELLCAF 454
                  899999.......999999999999888777666666666666644 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1   9.3e-22   8.4e-18       1      48 []     169     217 ..     169     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 9.3e-22
   STPPase_N   1 vDdiIerLlevrg.kpggkkvqLseaEIrqlCakareiFLsQPtLLeLe 48 
                 +Dd+I+rLl+v++  + +k ++L++aEI ++C++are+FLsQPtL+eL+
  CDO71599.1 169 IDDMIQRLLDVGYtGKVSKSLCLKNAEIVAICQAAREVFLSQPTLIELS 217
                 8************755558888*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3059.60
//
Query:       CDO71600.1  [L=422]
Description: hypothetical protein BN946_scf184911.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-29  101.7  17.6      1e-28  100.5  17.5    1.5  1  Peptidase_S8  Subtilase family
      1e-06   29.3   0.1    1.7e-05   25.4   0.0    2.7  2  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5  17.5   1.1e-32     1e-28       3     275 ..     153     395 ..     126     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.1e-32
                   T-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SST CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   3 gvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldt 99 
                   gv + ++DtG+ + h +                     f+g+  +   +  +++ +gn   HGthv G+aa++        gva +a +++vkvl++
    CDO71600.1 153 GVDIYIVDTGIYTAHSE---------------------FGGRARWGATFGGYANADGNG--HGTHVSGTAAGT------TYGVAKKANLIAVKVLSD 220
                   44444444444444444.....................555555555555555555554..************......99**************99 PP

                   TSB-HH..HHHHHHHHHHHHCT-S.....EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 100 sggsmetgteliraieeaaedkvd.....vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvg 191
                   +g+ +   ++++++++++ ++ +      + ++slg ++     ++     a+  ++ ++g+ v ++aGN+g       + +   +p+ ++ v+tvg
    CDO71600.1 221 QGSGSV--SDIVSGLNWVSQQAAAsgrpsIASLSLG-GSASTALDN-----AVTSLT-RNGIHVTVAAGNDG-------TDAGSTSPARATAVVTVG 301
                   999885..9***********888789999*******.555555554.....888899.99************.......55667789999******* PP

                   EESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHH...................EEEE-SHHHCHHHHHHHHHHHHHHHTT-- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 192 ayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglss...................yqsmsGTSmAsPnaagaaAlllsalpklt 269
                   a t ++  a+fS++G+++      di apG+n++s+w   ++ s                        ++++sGTSmA+P++ag +A ++s+  + t
    CDO71600.1 302 ASTIADARASFSNYGSVV------DIFAPGQNVISSWIGSTTVSV---ApfppqltsqltfpphaiqaTNNISGTSMATPHVAGLIATIISRDGNDT 389
                   *****************9......6*******9999988884433...2566888999*********************************999888 PP

                   HHHHHH CS
                   xxxxxx RF
  Peptidase_S8 270 petvra 275
                   p+ +++
    CDO71600.1 390 PAAIST 395
                   887765 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.8e-09   1.7e-05       2      81 ..      41     110 ..      40     111 .. 0.72
   2 ?   -1.7   0.0      0.55   4.9e+03      31      48 ..     130     147 ..     114     154 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.8e-09
                   EEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESS.SSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE CS
  Inhibitor_I9   2 YIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYki.lfnGfavklteeqaeklrkrpeVesVepDqsvrl 81 
                   YIV++k++++++     h  w ++ + +       + +    + +  +++Gfa+ l+e+ + +lr++p+Ve++ +D +v++
    CDO71600.1  41 YIVKLKDGVDKSV----HLDWLTAHHGH-------GATVTHPEWESnVLHGFAGILDENALNALRANPDVEYIAEDGIVHI 110
                   8888887666666....66666633333.......12222223333589*****************************997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.55
                   HHTT..--EEEEEEESSS CS
  Inhibitor_I9  31 lkgedsakagilysYkil 48 
                   +k ++++++ + y+Y + 
    CDO71600.1 130 AKLSSQNTNALTYTYTYD 147
                   333356778888999883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2735.72
//
Query:       CDO71601.1  [L=296]
Description: hypothetical protein BN946_scf184911.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.03   14.5   2.9       0.03   14.5   2.9    3.1  3  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.9   1.7e-06      0.03      79     136 ..       5      62 ..       1      63 [. 0.94
   2 ?    4.2   0.1    0.0025        44       2      24 ..      94     116 ..      93     121 .. 0.90
   3 ?   -1.6  15.2      0.15   2.7e+03      36     135 ..     178     279 ..     160     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-06
        EamA  79 fllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  ll+f+a++  +++ ++ + ++   f+ +++ +l g k  ++ l+++ ++ +G+l ++
  CDO71601.1   5 GLLWFIAVTLAPVTDVTALWNTNAFFAYVFACILTGGKWDVRRLVAVSIATAGALAVV 62 
                 59****************************************************9886 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0025
        EamA   2 lgillallaalfwaiyfvlskil 24 
                 +g+ll l a++++++y vl ki 
  CDO71601.1  94 IGDLLTLMASILYGAYQVLYKIY 116
                 899****************9985 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.15
        EamA  36 vrfliagillliiallkegklaklslkdwllllllgl.lgtvlafllffyalkktsasnaslitslePvftlilsvlllg..ekltlkqllgivlillG 131
                  ++l+  i + i+++l+ + +  ++++++ + ++ g+ l +++++  f+ +l  +++ + s+ ++l+ v++ +  +++ g  e++t++++lg+  i+ +
  CDO71601.1 178 CTMLVLWIPVPILHVLSVEAF-GMPRTALTYGVIAGIaLTGAIFNAGFMVLLGAWGPIVTSVGSLLTIVLVFLSDAIFGGavETVTIWSILGCSAIVTA 275
                 344444455556688888888.99999988888888889999999************999999999999888888888746699*********999998 PP

        EamA 132 vlli 135
                  +++
  CDO71601.1 276 FAIL 279
                 8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2063.82
//
Query:       CDO71602.1  [L=184]
Description: hypothetical protein BN946_scf184911.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-26   93.8   2.6    2.1e-18   66.7   0.2    2.1  2  RTA1      RTA1 like protein


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1     1e-10   1.9e-06      29      72 ..       2      45 ..       1      52 [. 0.96
   2 !   66.7   0.2   1.1e-22   2.1e-18     137     205 ..      76     144 ..      55     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-10
        RTA1 29 pfiiqivllllaPafiaaaiYmllgrlilllgeelsllrpklyt 72
                p+iiq+ +l+laP+ + aa+++ +gr+   lg ++s+l+pkly+
  CDO71602.1  2 PYIIQVSILVLAPTPLVAALFIGFGRITARLGAQYSRLSPKLYY 45
                8*****************************************97 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 1.1e-22
        RTA1 137 skkfkkfllalyaavlliliRsiyRvvElaeGwdgylithEvyfyvLdallillavvllnvfhpgrlfk 205
                 ++++k++++ ++++++li+iRs+yR++E+++G++g +++++v+f v+d++l++la+++ln++hpg l+ 
  CDO71602.1  76 DRSMKMLIAGVLISTVLIYIRSVYRIIEFIDGFNGTIAHTQVLFDVFDGMLVTLAMYTLNAMHPGILLS 144
                 5789*************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1296.91
//
Query:       CDO71603.1  [L=321]
Description: hypothetical protein BN946_scf184911.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-58  197.4   4.9      3e-58  196.8   4.9    1.2  1  RTA1      RTA1 like protein
  ------ inclusion threshold ------
       0.42   10.3   6.4      0.074   12.7   1.8    2.2  2  DUF3149   Protein of unknown function (DUF3149)


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   4.9   3.4e-62     3e-58       3     205 ..      61     286 ..      59     287 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 3.4e-62
        RTA1   3 lGcileviGYigRilsakntskaslgpfiiqivllllaPafiaaaiYmllgrlilllgeelsllrpklytkiFvvlDvvslllqaaGGglaasasssae 101
                 ++++ e++G+ +R++s+++  +   +p+i+q++++++aP  + aa+++++gr+ + lg+++ +l+p  y++iF+++D++sl++q++GGg+a s+ ++++
  CDO71603.1  61 FAGVSEILGWSARLWSSYS--PLAEDPYIMQLCVTIIAPSPLVAALFIIFGRISERLGPHYGRLTPIQYSIIFLTCDIISLVTQGVGGGIAGSSINNQS 157
                 67899**************..556**********************************************************************88888 PP

        RTA1 102 .aklGeniiiaGlalQvvvlvvFlllaldFllrvr........................kskkfkkfllalyaavlliliRsiyRvvElaeGwdgylit 175
                   +lG +i++aG+++Q+ ++++F++l+++F++r+                          ++k++ ++l l++ +++++iRs+yR++El++G++g++i+
  CDO71603.1 158 dVDLGGHIMLAGIIFQLTSIIIFVILMMEFFIRYAmdkpvrpprkgsdlaesslavrgvLTRKLQLLILGLLMMTAFLVIRSVYRTIELINGFEGEIIR 256
                 8**********************************************************7789************************************ PP

        RTA1 176 hEvyfyvLdallillavvllnvfhpgrlfk 205
                 +E++f ++d+++++ a+++lnv+hpg+l++
  CDO71603.1 257 TEIWFNIFDGAMVVCATYTLNVLHPGWLLE 286
                 ***************************986 PP

>> DUF3149  Protein of unknown function (DUF3149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2      0.85   7.6e+03      24      32 ..      29      37 ..      28      38 .. 0.70
   2 ?   12.7   1.8   8.2e-06     0.074      16      34 ..     177     195 ..     176     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.85
     DUF3149 24 gaffiryFi 32
                + +f+++F+
  CDO71603.1 29 CITFVVLFS 37
                567888886 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.2e-06
     DUF3149  16 VIvftigmgaffiryFirK 34 
                 +I+f+i+m+ ffiry + K
  CDO71603.1 177 IIIFVILMMEFFIRYAMDK 195
                 7**************8755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2369.89
//
Query:       CDO71604.1  [L=200]
Description: hypothetical protein BN946_scf184911.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-35  120.8   3.6    2.9e-35  120.2   3.6    1.3  1  SGS       SGS domain
    5.1e-09   37.0   0.5    7.2e-09   36.6   0.0    1.5  2  CS        CS domain


Domain annotation for each model (and alignments):
>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   3.6   3.3e-39   2.9e-35       1      83 []     112     198 ..     112     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 3.3e-39
         SGS   1 kdWdklekelekeekeekke....eegeaalnklFkklYadadedtrrammKSyveSnGtvLstnWeevkkkkvetkpPegmeakkw 83 
                 k+Wd +++e+ ++ek  +++    ++g+aa+n++FkklYadadedtrrammKS++eS+Gt+LstnWeevkk+kve+kpPeg e+kkw
  CDO71604.1 112 KNWDGITNEILESEKPVSPDedpnAGGDAAVNEFFKKLYADADEDTRRAMMKSFQESGGTTLSTNWEEVKKSKVEVKPPEGSEWKKW 198
                 79********9888876666677799************************************************************9 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     8e-13   7.2e-09       2      76 .]       5      76 ..       4      76 .. 0.88
   2 ?   -4.0   0.1         2   1.8e+04      24      30 ..     181     187 ..     177     188 .. 0.44

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 8e-13
                SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECEBSS-BETTTEEEEEETTEEEEEEEB CS
          CS  2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliegeLfgpIdpeesswtieskkveitLkK 76
                ++++y+t+++++++i+ k++  + ++vk++f++r+++   g+++l++e  L g+Idp +s +t+ + kve+   K
  CDO71604.1  5 RHEFYETDEKLTLSIFDKGA--DPEQVKITFEPRKFTYVNGEKSLVLEP-LKGQIDPAKSDYTVGKVKVEVRFAK 76
                89*****************9..*************76664345666665.********************98877 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
                 TTTCEEE CS
          CS  24 kkkdvkv 30 
                 kk++v+v
  CDO71604.1 181 KKSKVEV 187
                 3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1466.63
//
Query:       CDO71605.1  [L=357]
Description: hypothetical protein BN946_scf184911.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-13   50.1   0.1    1.5e-12   47.8   0.0    2.0  2  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.2e-08   34.2   0.0    4.4e-08   33.3   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    7.1e-05   23.1   0.0    0.00023   21.5   0.0    1.9  1  GST_N     Glutathione S-transferase, N-terminal domain
    0.00011   22.4   0.1     0.0039   17.3   0.0    3.2  3  GST_C_3   Glutathione S-transferase, C-terminal domain
    0.00032   20.7   0.2     0.0019   18.2   0.1    2.2  2  GST_C_2   Glutathione S-transferase, C-terminal domain
      0.002   18.3   0.1     0.0074   16.5   0.0    2.0  2  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.9e-16   1.5e-12       1      71 [.      12     100 ..      12     106 .. 0.85
   2 ?   -0.8   0.0      0.68     2e+03      45      61 ..     162     182 ..     149     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 4.9e-16
                 EES-TTSHHHHHHHHHHHHHT-.....-EEEE---TTTT.HHHHHHH-TT--SSEEETT.S-...........EEESHHHHHHHHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekgl.....pvevvevtpgeh.deellaknplgkvPvLedd.ge...........altdSlaIidyLeely 71 
                 Ly++ +S+++ ++ laL+ekg+     + ++v++ +ge+  +++l+ np+g+vP+L+ + ++           a++dS aI+++L++ +
  CDO71605.1  12 LYHYHSSVWSSVPILALEEKGYgpdevDLKEVDLAKGENfMPSYLRLNPQGTVPTLVVPlEKtlspeiesrykAIQDSKAIVEFLDKSR 100
                 9*********************7554447889999*********************54433346666777788*************866 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.68
                 --SSEE...ETT.S-EEESHH CS
     GST_N_3  45 gkvPvL...edd.gealtdSl 61 
                 + +P+L   +d+ ++ l+dS+
  CDO71605.1 162 KLLPFLrgkRDTlAKLLQDSE 182
                 67999*775555899999997 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.5e-11   4.4e-08       2      69 ..      18      98 ..      17      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.5e-11
                -HHHHHHHHHHHHCT-.-EEEEE..EH...-TTSHHHHHHHHCTTTSSSEEE-C.TTE..........EEESHHHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkgl.ediisv..vvlepkgfekseefprlnprgtVPvLwdk.dgq..........vineSseIlrylet 69
                + w++   +al++kg  +d+++   v +  kg++  + ++rlnp+gtVP+L+++ + +           i +S++I+++l++
  CDO71605.1 18 SVWSSVPILALEEKGYgPDEVDLkeV-DLAKGENFMPSYLRLNPQGTVPTLVVPlEKTlspeiesrykAIQDSKAIVEFLDK 98
                778888999******98777665336.4479999999****************665556777778899************96 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.6e-08   0.00023       4      61 ..      11      83 ..       8      98 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.6e-08
                EEESSSTSHTHHHHHHHHHHTT-...EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET............T CS
       GST_N  4 tlysirgsprahrirlllaakgv...eyevvpldfeageekspellklnplgkvPaLedn............g 61
                 ly++ +s ++ ++ l+l++kg    e+  +++d+ +ge+  p +l+lnp g vP+L+++             
  CDO71605.1 11 SLYHYHSSVWSSVPILALEEKGYgpdEVDLKEVDLAKGENFMPSYLRLNPQGTVPTLVVPlektlspeiesrY 83
                69*******************986557777999*******9*****************999555555555544 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.61   1.8e+03      76      98 ..      76      98 ..      62     100 .. 0.79
   2 ?   -1.0   0.0      0.69   2.1e+03      18      39 ..     191     213 ..     171     221 .. 0.66
   3 !   17.3   0.0   1.3e-06    0.0039      16      71 ..     222     284 ..     203     354 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.61
                -HHHHHHHHHHHTSHHHHHHHCT CS
     GST_C_3 76 fpklkalyervearpkikaYles 98
                 p++ + y++++  ++i ++l +
  CDO71605.1 76 SPEIESRYKAIQDSKAIVEFLDK 98
                48888899999999999999943 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.69
                 H.HHHHHHHHHHHHCHHHHHHHH CS
     GST_C_3  18 a.ekkkefleerlpkflkyfekv 39 
                 + ++  ++++  + kf+++fe++
  CDO71605.1 191 KtKAFWQVKKLAVDKFIQVFEEA 213
                 13566667777888899988876 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.3e-06
                 HHH.HHHHHHHHHHHHCHHHHHHHHHH...C.HGTSSSSTTS--HHHHHHHHHHHHHHHH...T CS
     GST_C_3  16 eea.ekkkefleerlpkflkyfekvlk...k.kgggylvgdklTyADlalfqvldgleea...e 71 
                 +ea ++++efl++    + + + +vl+   k   g+y +gd+l++ADl+l ++l ++ ++   +
  CDO71605.1 222 DEArQRREEFLQSARTAW-GGLREVLTtlhKeIIGPYTLGDQLSIADLHLAAWLTHIAFLvgaN 284
                 333566677775555544.55555555465425566******************9999886541 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   6.3e-07    0.0019       7      46 ..     238     276 ..     222     289 .. 0.76
   2 ?   -1.2   0.0      0.73   2.2e+03      16      37 ..     294     314 ..     283     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.3e-07
                 HHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHH CS
     GST_C_2   7 aleqldaaldaleahLadspflfGdqptlaDialapflvr 46 
                 a+  l++ l +l +++ + p+ +Gdq+++aD  la++l  
  CDO71605.1 238 AWGGLREVLTTLHKEIIG-PYTLGDQLSIADLHLAAWLTH 276
                 555677777777777774.69***************9975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.73
                 HHCTTT---SS.CTTCS--HHH CS
     GST_C_2  16 daleahLadspflfGdqptlaD 37 
                   +eah +d+ f +   +++a 
  CDO71605.1 294 GRIEAHVGDG-FNLPKDFSVAE 314
                 6799999998.79999999886 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.5e-06    0.0074      31      72 ..     242     282 ..     184     290 .. 0.80
   2 ?   -2.4   0.0         2   5.9e+03      75      91 ..     324     344 ..     300     345 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTT CS
       GST_C  31 vaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlgl 72 
                 ++evl  l +e+    y  Gd+l++AD++l+++l++ + l++
  CDO71605.1 242 LREVLTTLHKEII-GPYTLGDQLSIADLHLAAWLTHIAFLVG 282
                 4555555555555.7899*****************9887766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
                 T....TTTSHHHHHHHHHHHT CS
       GST_C  75 g....qekfpnlkawlerima 91 
                 +    +e   +l a+++ i +
  CDO71605.1 324 SnvdsTERQSKLAAFWDAIKE 344
                 223355888889999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2722.87
//
Query:       CDO71606.1  [L=820]
Description: Glycosyltransferase Family 31 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-06   25.8   0.0    0.00068   19.5   0.0    2.6  3  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.8e-08   0.00068       1      76 [.     270     351 ..     270     359 .. 0.89
   2 !    3.1   0.0     0.004        71      80     103 ..     405     428 ..     401     435 .. 0.84
   3 ?   -2.5   0.0      0.22   3.9e+03     146     165 ..     517     536 ..     516     549 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.8e-08
  Galactosyl_T   1 arRnaiRktWmnekeaeg...........nriktlFlvGlsakedkkvkelvmeeaklygDivvvdledsYenltlKtltlllwavs 76 
                   +rR  +R+tW n+  ++             r  ++F++G++    k+ ++ v  e ++y+D+v + ++++   ++ K+ ++++wa++
    CDO71606.1 270 ERRMLVRSTWANHVRSREgagdgdggigtSRTVVRFILGQPR---KDWERRVRLEMETYNDMVILPVQENM--NSGKSHAFFSWAAN 351
                   599**********9888889********999**********9...777777889***************86..57999999999875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.004
  Galactosyl_T  80 eaklilkvDdDvyvnpdkLlsllk 103
                   + ++++k+DdD +v  ++L   l 
    CDO71606.1 405 RPDFVVKADDDSFVMLAELEARLR 428
                   5699************99987775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.22
  Galactosyl_T 146 pyasGtlYvlsreavekllk 165
                   ++++G lY+ls  +v  ++k
    CDO71606.1 517 RFMAGELYALSFALVDWVAK 536
                   5899********99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 5295.61
//
Query:       CDO71607.1  [L=477]
Description: hypothetical protein BN946_scf184911.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3416.31
//
Query:       CDO71608.1  [L=463]
Description: hypothetical protein BN946_scf184911.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3179.57
//
Query:       CDO71609.1  [L=220]
Description: hypothetical protein BN946_scf184911.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.2   1.0       0.29   11.1   1.0    1.6  1  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   1.6e-05      0.29       5      38 ..     179     212 ..     177     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.6e-05
        CsbD   5 gkaeqvkGkvKeaaGkaTgdekleaeGkadqlkG 38 
                 g+ +++ G++ +aaG++ g+  l   G  +++ G
  CDO71609.1 179 GAGDKIMGNLEKAAGRVSGNANLVERGELRKTGG 212
                 889*************************999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                       87  (0.00485247); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1625.04
//
Query:       CDO71610.1  [L=183]
Description: hypothetical protein BN946_scf184911.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      100  (0.00557756); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1519.66
//
Query:       CDO71611.1  [L=634]
Description: hypothetical protein BN946_scf184911.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0064   16.5   0.5      0.014   15.3   0.5    1.5  1  OppC_N    N-terminal TM domain of oligopeptide transport perm
  ------ inclusion threshold ------
       0.14   11.9   0.8       0.25   11.1   0.8    1.3  1  PMP1_2    ATPase proteolipid family


Domain annotation for each model (and alignments):
>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   1.6e-06     0.014      10      33 ..     350     373 ..     348     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-06
      OppC_N  10 FkrNklAvvglvilllllliaifa 33 
                 F++Nk Av+g ++++ l++++i+ 
  CDO71611.1 350 FFKNKGAVAGVFLIVGLAAASIVL 373
                 9*******************9973 PP

>> PMP1_2  ATPase proteolipid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   2.8e-05      0.25       8      31 ..     355     378 ..     353     388 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.8e-05
      PMP1_2   8 GGviLvFvLvGLACvAivltilYR 31 
                 G v  vF++vGLA   ivl i + 
  CDO71611.1 355 GAVAGVFLIVGLAAASIVLFIFFY 378
                 77888**************99863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1360  (0.0758548); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.62u 0.40s 00:00:02.02 Elapsed: 00:00:00.63
# Mc/sec: 3046.24
//
Query:       CDO71612.1  [L=204]
Description: hypothetical protein BN946_scf184911.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-21   77.4   0.0    2.6e-21   77.0   0.0    1.2  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.5e-25   2.6e-21       5     133 .]      58     197 ..      55     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.5e-25
                   EEEETTSTTHH......HHH-TT-EEEEEES-H..HHHH.HHHHHHEEEEEEEEE--.--.........S-EEE-CHHHCTTT-EEEE--GGG...- CS
  ADH_zinc_N_2   5 evidyrtedfe......aatggegvDvvldtvg..gealleaslkvlpggGrlvsig.gpp........lsaallkpakkrkgrsvkyeflfsmkas 84 
                   +++dy++  ++      + t + ++Dv l++vg   ++l+ +s ++l+++G ++s+g + +        +++ llkp +  +g ++k++++  +k+ 
    CDO71612.1  58 QFFDYTKSPLHeqliaaNPT-P-KYDVFLEAVGvlDPTLFLKSEAYLDPHGVFISVGpQGSgvgnyvhfVWNVLLKPGF-LGGVKRKWKLVS-VKPV 150
                   45688855555577753333.4.5***********99999*******888*******6555*******77777777777.********9999.9**9 PP

                   .-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                     +d ++e a+l+eeGk++pvvd+v+++e+a +A++++ ++ra+GK+V+
    CDO71612.1 151 -EKD-IREFAKLVEEGKIKPVVDSVYEFEDALKAYERILTKRATGKVVV 197
                   .999.*******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1500.18
//
Query:       CDO71613.1  [L=312]
Description: hypothetical protein BN946_scf184911.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-23   83.2   0.0    5.3e-23   82.1   0.0    1.5  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0     3e-27   5.3e-23       1     158 [.     101     289 ..     101     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 3e-27
  Isochorismatase   1 talvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvhe..................leevkgdlderkaaphfkpgttga 76 
                      +a+v+iDmqn f++   +++++  a v     l+ a r++gi+++++++                      +   g + ++ + + + +g+  +
       CDO71613.1 101 SAIVIIDMQNFFLHPDLRDHPTGLACVIPLMNLVPALRAQGIKILWVNWGLTehelttippslvrgfmksGRGGFGAQLPGDFGRLLMRGEFNS 194
                      69***********8889999999999999999*****************999999***********9999777778888888888888999999 PP

  Isochorismatase  77 elvpelaple.......gdvvvdKtrfsaf..agtdldeiLkelgiktivlaGiatd...vCVeatardaldlGyevvvvsDAvaalspel.hd 157
                      el+  l+ l        +dv ++K+r+s+    +t ld +L+e+gi+t+ +aG+++d    CV+ t +da+ +Gy+++vv+D+va+ sp +  +
       CDO71613.1 195 ELYGPLQGLYeegrregTDVWIHKNRMSGLwgPQTALDLYLQEQGITTLFFAGVNADqasQCVLGTLVDAYFRGYDCIVVEDCVATTSPAGaLE 288
                      999999887777777789999*********77789*******************9873337**************************9987555 PP

  Isochorismatase 158 a 158
                      +
       CDO71613.1 289 N 289
                      5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2460.29
//
Query:       CDO71614.1  [L=783]
Description: hypothetical protein BN946_scf184911.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   10.5   2.8       0.69    9.4   2.8    1.6  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.8   3.9e-05      0.69      10      38 .]     569     597 ..     564     597 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 3.9e-05
        SKG6  10 vaIavaVaVPVaViiivLlailifvrRRk 38 
                 +  +v  a+++++ +i+L++ l++ rRR+
  CDO71614.1 569 AVAGVFLAIGIVIAAIALGICLFLRRRRR 597
                 45566679***********9999989885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.10u 0.32s 00:00:01.42 Elapsed: 00:00:00.52
# Mc/sec: 4558.43
//
Query:       CDO71615.1  [L=84]
Description: hypothetical protein BN946_scf184911.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-14   53.3   0.2    2.9e-14   53.0   0.2    1.1  1  Ras              Ras family
    1.1e-10   41.8   0.1    1.3e-10   41.5   0.1    1.1  1  Roc              Ras of Complex, Roc, domain of DAPkinase
    0.00016   21.3   0.0    0.00018   21.0   0.0    1.1  1  AAA_7            P-loop containing dynein motor region
    0.00028   20.3   0.0    0.00033   20.1   0.0    1.1  1  ATPase           KaiC
    0.00095   19.5   0.1     0.0011   19.2   0.1    1.1  1  AAA_22           AAA domain
     0.0014   18.5   0.0     0.0016   18.4   0.0    1.2  1  NACHT            NACHT domain
     0.0078   15.4   0.0      0.009   15.2   0.0    1.1  1  DAP3             Mitochondrial ribosomal death-associated pro
  ------ inclusion threshold ------
       0.01   16.2   0.0       0.01   16.2   0.0    1.1  1  AAA_16           AAA ATPase domain
      0.011   15.2   0.0      0.013   14.9   0.0    1.1  1  Arf              ADP-ribosylation factor family
      0.012   15.3   0.0      0.012   15.3   0.0    1.1  1  AAA_30           AAA domain
      0.013   14.8   0.0      0.015   14.6   0.0    1.1  1  Septin           Septin
      0.018   14.7   0.0      0.021   14.6   0.0    1.1  1  Sigma54_activat  Sigma-54 interaction domain
      0.023   13.9   0.0      0.024   13.9   0.0    1.1  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.029   14.7   0.0      0.036   14.4   0.0    1.2  1  AAA_19           AAA domain
      0.034   13.6   0.0      0.034   13.6   0.0    1.1  1  PhoH             PhoH-like protein
      0.037   14.6   0.1      0.042   14.4   0.1    1.1  1  ABC_tran         ABC transporter
      0.052   13.0   0.0      0.064   12.7   0.0    1.1  1  SRPRB            Signal recognition particle receptor beta su
      0.061   13.0   0.0      0.065   12.9   0.0    1.1  1  AAA_24           AAA domain
      0.073   13.1   0.0      0.077   13.0   0.0    1.1  1  ResIII           Type III restriction enzyme, res subunit
      0.081   12.7   0.0      0.099   12.4   0.0    1.1  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.098   12.1   0.0        0.1   12.0   0.0    1.1  1  TniB             Bacterial TniB protein
       0.16   11.6   0.0       0.17   11.5   0.0    1.1  1  cobW             CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.2   3.6e-17   2.9e-14       1      52 [.      22      73 ..      22      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 3.6e-17
                EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEE CS
         Ras  1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevklei 52
                K +++G+ ++GKt+ll++f++++Fke++++Tigv+f ++++++ +k++kl++
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHFTHNSFKEHSQHTIGVEFSSRTVKLGEKRIKLQV 73
                89************************************************98 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1   1.6e-13   1.3e-10       1      46 [.      22      66 ..      22      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.6e-13
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGG CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikg 46
                K +++G++g+GKt+ll++f++++f+e+++ tigv+f++++v k+ +
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHFTHNSFKEHSQHTIGVEFSSRTV-KLGE 66
                789*********************************99987.4432 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-07   0.00018      35      73 ..      22      61 ..      13      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-07
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaqt 73
                + +++G++GtGKt+++++ + +++++ +  ++ ++fs++t
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHfTHNSFKEHSQHTIGVEFSSRT 61
                5689**************888889999999********99 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     4e-07   0.00033      22      71 ..      23      72 ..      18      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4e-07
      ATPase 22 vlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslG 71
                + i Ge+GtGKt +  +F+ ++ ++  + ++ v + ++ ++l e+  +l 
  CDO71615.1 23 YIIIGEAGTGKTCLLHHFTHNSFKEHSQHTIGVEFSSRTVKLGEKRIKLQ 72
                6799***************************9999999988877665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.4e-06    0.0011       9      52 ..      24      63 ..      22      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-06
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.s 52
                +++Ge+GtGKT ll  ++++       +e++ +++ v+ +s t +
  CDO71615.1 24 IIIGEAGTGKTCLLHHFTHNS-----FKEHSQHTIGVEFSSRTvK 63
                89***************9986.....4556778887777777653 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     2e-06    0.0016       4      31 ..      24      51 ..      22      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2e-06
                EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  4 ilqGeaGsGKTtLlqklalawaegklpq 31
                i+ GeaG GKT Ll+++ +   +++ ++
  CDO71615.1 24 IIIGEAGTGKTCLLHHFTHNSFKEHSQH 51
                899**************99877777655 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.009      24      50 ..      21      47 ..      11      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                -EEEEE-SSSSSTTTTHHHHHHHGGGS CS
        DAP3 24 krlvltGekgsGKSvlLlqalayAlek 50
                 ++++ Ge g+GK+ lL +  +  +++
  CDO71615.1 21 MKYIIIGEAGTGKTCLLHHFTHNSFKE 47
                69******************9998875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.2   0.0   1.3e-05      0.01      28      56 ..      24      53 ..      12      84 .] 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
      AAA_16 28 llsGesGvGKsslvrellralekdg.gifl 56
                +++Ge+G+GK+ l+ ++ +   k++  +++
  CDO71615.1 24 IIIGEAGTGKTCLLHHFTHNSFKEHsQHTI 53
                799**************9866666323333 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.6e-05     0.013      14      59 ..      20      70 ..       9      74 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
                EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEE CS
         Arf 14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlk 59
                 ++ +++G  ++GKt +l++++++++++  + Tig  f +++++   k +k
  CDO71615.1 20 LMKYIIIGEAGTGKTCLLHHFTHNSFKEhSQHTIGveFSSRTVKLgeKRIK 70
                6899*******************9998745677772256667766334444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.5e-05     0.012      22      57 ..      24      60 ..       8      74 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
      AAA_30 22 vltGpAGtGKttalkal.reaweaaggrviglAptgk 57
                ++ G AGtGKt +l +   + ++++ ++ ig+  +++
  CDO71615.1 24 IIIGEAGTGKTCLLHHFtHNSFKEHSQHTIGVEFSSR 60
                899*************944445555677777666655 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.9e-05     0.015       5      62 ..      21      71 ..      17      79 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
                EEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEE CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvkl 62
                +  +++Ge g+Gkt l+  + +++ +e+++++   e +++tv++ +k+       +kl
  CDO71615.1 21 MKYIIIGEAGTGKTCLLHHFTHNSFKEHSQHTIGVEFSSRTVKLGEKR-------IKL 71
                56799****************999999986666655555555555444.......444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.5e-05     0.021      21      60 ..      19      59 ..       4      69 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
                     SSS-EEEECSTTSSHHHHHHH.HHHHSTTTTS-EEEEETTT CS
  Sigma54_activat 21 tdlsvlitGesGtGKellara.iheaskrkekpfvavncaa 60
                       ++ +i Ge GtGK++l ++  h++ k+++++ + v+ ++
       CDO71615.1 19 FLMKYIIIGEAGTGKTCLLHHfTHNSFKEHSQHTIGVEFSS 59
                     348899**********8766515777787888777776655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     3e-05     0.024       4      34 ..      23      52 ..      21      75 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
     DUF2075  4 vlVtGvaGtGKtvvllnllaeleddeeerta 34
                +++ G+aGtGKt +l ++ ++   +e+ +++
  CDO71615.1 23 YIIIGEAGTGKTCLLHHFTHNS-FKEHSQHT 52
                6899**********99999887.44444444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.5e-05     0.036      13      53 ..      23      60 ..      20      74 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.5e-05
      AAA_19 13 llvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgr 53
                 ++++ +GtGKT +l+h  +   +++++   + + v f +r
  CDO71615.1 23 YIIIGEAGTGKTCLLHHFTHNSFKEHSQ---HTIGVEFSSR 60
                589**************99988888754...4445555555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.2e-05     0.034      22      48 ..      23      49 ..       4      71 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
                EEEE--TTSSTTHHHHHHHHHHHHTTS CS
        PhoH 22 vfaiGpaGtGKtylavalavealkkkk 48
                 ++iG+aGtGKt l      + +k+++
  CDO71615.1 23 YIIIGEAGTGKTCLLHHFTHNSFKEHS 49
                479**********98877777776654 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   5.1e-05     0.042      13      41 ..      22      50 ..      20      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-05
                EEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGe 41
                k+ i+Ge G+GK+ Ll  +++++ ++  +
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHFTHNSFKEHSQ 50
                678****************9987665444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.8e-05     0.064       6      35 ..      23      53 ..      20      73 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.8e-05
                EEEE-STTSSHHHHHHHHHHSS---.B---S CS
       SRPRB  6 vllvGlsdsGKTslftrLttdsvkk.tvtSq 35
                 +++G   +GKT l+++ t +s+k+ ++  +
  CDO71615.1 23 YIIIGEAGTGKTCLLHHFTHNSFKEhSQHTI 53
                69******************97765144444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     8e-05     0.065       4      22 ..      22      40 ..      20      71 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                k++i+G++g+GKT l+ ++
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHF 40
                899*************999 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.5e-05     0.077      26      56 ..      22      51 ..       3      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-05
                EEEEEESTTSTHHHHHHHHHHHH-S.....- CS
      ResIII 26 rglikmaTGtGKTlvaaklierllkkgkeek 56
                +++i  + GtGKT ++ +++ + +k++++ +
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHFTHNSFKEHSQ-H 51
                899*******************9998665.3 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012     0.099       3      40 ..      22      61 ..      20      67 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
   PduV-EutP  3 killiGkvgsGKttLtqalkgeelkYk..ktqaiefsdev 40
                k ++iG+ g+GKt L ++++++++k +   t  +efs+++
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHFTHNSFKEHsqHTIGVEFSSRT 61
                6689***************999887541156666777766 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012       0.1      37      65 ..      22      50 ..      11      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
        TniB 37 nlllvGdsnnGKtmivekFarlhppekde 65
                +++++G+  +GKt ++++F+++  +e+++
  CDO71615.1 22 KYIIIGEAGTGKTCLLHHFTHNSFKEHSQ 50
                578****************9887665544 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00021      0.17       3      24 ..      23      44 ..      21      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
                EEEEESTTCCHHHHHHHHHCT- CS
        cobW  3 tvltGflGsGKTtLlnhllenr 24
                +++ G  G+GKT Ll h ++n+
  CDO71615.1 23 YIIIGEAGTGKTCLLHHFTHNS 44
                6899**************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 572.39
//
Query:       CDO71616.1  [L=106]
Description: hypothetical protein BN946_scf184911.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-12   46.4   0.2    3.1e-12   46.4   0.2    1.0  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.2   1.7e-16   3.1e-12     146     247 ..      14      99 ..       1     101 [. 0.84

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 1.7e-16
                   HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 146 ainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyq 242
                   a+  ++ +kg+ v ++aGN+g       + +    p+ +++v+tvga t ++  a+fS++Gp+       di apG++i+s+w  ++n++++   + 
    CDO71616.1  14 AVTSLT-RKGIHVTVAAGNEG-------TDARNTRPARADGVVTVGASTIADARASFSNYGPVL------DICAPGEHILSSWIGRNNATKNI--FG 94 
                   777777.99************.......66677889999************************9......6**************99888666..66 PP

                   EE-SH CS
                   xxxxx RF
  Peptidase_S8 243 smsGT 247
                   +  GT
    CDO71616.1  95 TLDGT 99 
                   66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 773.39
//
Query:       CDO71617.1  [L=452]
Description: hypothetical protein BN946_scf184911.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-25   90.2   0.0    1.5e-24   86.5   0.0    2.7  3  D-ser_dehydrat  Putative serine dehydratase domain
    2.1e-15   57.0   0.1      3e-15   56.5   0.1    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.12   1.1e+03      67      84 ..     145     162 ..      71     170 .. 0.77
   2 ?   -2.8   0.0       1.2   1.1e+04      17      39 ..     184     206 ..     172     216 .. 0.67
   3 !   86.5   0.0   1.6e-28   1.5e-24       1      96 []     326     432 ..     326     432 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.12
                     GGGS-TT-EEEEE-S-HH CS
  D-ser_dehydrat  67 addlrvGdvvrlipnHaC 84 
                     ++  +vG  +r+++ H++
      CDO71617.1 145 DELSAVGAAMRILIDHPD 162
                     355678888888888887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                     EEES--HHHH-S-SS--BT-EEE CS
  D-ser_dehydrat  17 alvdaGskalsldssgpgfgkvv 39 
                     + vd+Gs   +l  ++p+f  +v
      CDO71617.1 184 IKVDCGSQRAGLKPESPAFKHLV 206
                     55899999888884444455555 PP

  == domain 3  score: 86.5 bits;  conditional E-value: 1.6e-28
                     -EEEEEEEEEEETTTT......EEES--HHHH-S-S.S--BT-EEE-TTSEEEEB-..EE-SS-EEEE--TT-.........GGGS-TT-EEEEE CS
  D-ser_dehydrat   1 AlavlatVvSrptarr......alvdaGskalslds.sgpgfgkvvagleegwvvsvrrlsdEhgiltleees.........addlrvGdvvrli 79 
                     A +vlatV S++++r+      a++daG++a+s+d+ ++pg+g+++ +    w++s  r+ +Ehgilt+ +++         + +l++Gd+v+++
      CDO71617.1 326 AQRVLATVTSYYPGRGedgsdeAMCDAGALAMSKDTgPRPGYGDITGK---PWRLS--RVAQEHGILTMMSPAsfelgplqgDGSLKLGDMVQIV 415
                     679**********999999999*************99999*****954...79988..************999********999*********** PP

                     -S-HHHHHTT-SEEEEE CS
  D-ser_dehydrat  80 pnHaCptvnlhdayvvv 96 
                      +HaC++ +++++y+vv
      CDO71617.1 416 GQHACLILAGYPWYYVV 432
                     ***************98 PP

>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   3.3e-19     3e-15       1     168 [.      51     236 ..      51     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 3.3e-19
                     EEHHHHHHHHHHHHHHSCT.TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTS.....CSEEEEESCSTGGGHHHHHH.. CS
  Ala_racemase_N   1 idldalrhNlrrlralagp.gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagi.....tapilvlegfspeelaalae.. 87 
                     id++ +++N++++ ++a++ ga+++a+vK+   + g    +   a++  + ++v+t+ E  e+ +ag+      +++l+  +++p+++a+l +  
      CDO71617.1  51 IDRAVFARNCAKMHEHAKAlGARFRAHVKSHKTPEGTRLQLLSSADE-THSIVVSTVMEVCEVFRAGLmadgtVKDVLYGLPMAPNKIADLSAlt 144
                     789999***********556**********88888888888877776.*************9999998888855666555558888888887788 PP

                     .......TTEEEEESSHHHHHHHHHHHHH..TTS-EEEEEEBESSSSSSSBSC.HHH.HHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHH CS
  Ala_racemase_N  88 .......ydltvtvdsleqlealaaaare..agkplrvhlkidtgmgRlGftp.eel.eellealaalpglrleglmtHfasadepdeetea 168
                            + + +++d+++q++ ++a  +   ++++  v++k+d+g  R G++p + + + l++ +  +p ++l g++tH +++ + ++++ea
      CDO71617.1 145 delsavgAAMRILIDHPDQVKVIEAWESTkaNNRKWSVFIKVDCGSQRAGLKPeSPAfKHLVQSVLGSPSVSLYGFYTHAGNSYASTSFAEA 236
                     899998779***********988877766669*********************633359***********************9554423332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3062.43
//
Query:       CDO71618.1  [L=275]
Description: hypothetical protein BN946_scf184911.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-42  146.2   0.0    1.7e-42  145.7   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    0.00035   21.3   0.3    0.00046   20.9   0.3    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00043   19.8   0.0     0.0037   16.8   0.0    2.0  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.016   14.1   2.0       0.55    9.0   0.2    2.1  2  COesterase     Carboxylesterase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.0   3.9e-46   1.7e-42      42     209 ..      96     269 ..      95     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 3.9e-46
                    TS-TTHHHHHHHHHHHHHHHTHH.HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---..EEEEEEESE-SST.SSTTSHHHHHCHHTTTSSSSC CS
  Abhydrolase_3  42 ehpfPaavedalaalrwlaeqaw.elgadpsrivlaGdSaGGnlaaavalrardegepk..vagqvliyPvtdl.ertesesikkaeeladgpllt 133
                    e+p+Paaveda++ l+w+ +q + elg+dp+ri+++G S GGnlaa ++++a+ ++ p+  +++q+l+ Pv+d  ++ e +++ + +e+a++  l 
     CDO71618.1  96 ENPYPAAVEDAVDTLQWVYSQGKaELGIDPARIAVGGSSSGGNLAAILTHKAALTE-PPipLVFQLLVVPVVDNtASAEDDRYPSWKENANTVSLV 190
                    89********************99*************************9999985.4445*********88886444444444446678877899 PP

                    HHHHHHHHHHHSS.GGGGGSTTTSGGGCS-..SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 134 raaldlfwrlylp.eadrddplaspllaed..lsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgf 209
                    +a++ +f + y p ++d++++  sp++a+d  ++++p ++++vae D+lrdeg+ y e+l++agv+ve+++y+g++H +
     CDO71618.1 191 PAKMIWFRNNYSPnKEDWSKWDNSPIFAPDetFRKAPSAWIAVAELDILRDEGITYGEKLKKAGVPVETVVYKGAPHPI 269
                    ************88**************5445*********************************************75 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.3     1e-07   0.00046      48     207 ..     100     267 ..      30     274 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1e-07
                    HH.CHHHHHHHCCTT..........TTSEEEEEETCHHHHHHHHHHCC..EEEEES-..----TTTS----TTHHHHHHTT-C..CCCHCCH.... CS
  Abhydrolase_6  48 ed.ladlaalldelaa........gggpvvlvGHSlGGalalaaaplalvvgvlldppptalpagllaaalelllallallrl..lawlsre.... 128
                    ++ ++d +++l+ + +        ++ ++ + G S GG la+ + + a     l +p     p+ ++  ++++++   +++ +  + w   +    
     CDO71618.1 100 PAaVEDAVDTLQWVYSqgkaelgiDPARIAVGGSSSGGNLAAILTHKA----ALTEP---PIPLVFQLLVVPVVDNTASAEDDryPSWKENAntvs 188
                    2224555666666666888899888888899************88888....99999...777777777777777666655554567774334454 PP

                    .S-HS...CCCC.HHHC.CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-C..HHHHCHHCCCHSTTEEETCE...SSS CS
  Abhydrolase_6 129 .plpr...lfla.deda.daawrarlarlaallaglgllpaaawadlpvpllvlggeDp..lvprllerllaqagarlpvvlpgaGH 207
                        +    +++ + ++ +++w  ++  +    +  +  +++aw ++ ++  +   +D+  ++ + l+++++ ++++  vv++ga H
     CDO71618.1 189 lV--PakmIWFRnNYSPnKEDWSKWDNSPIFAPDETFRKAPSAWIAVAELD-I--LRDEgiTYGEKLKKAGV-PVET--VVYKGAPH 267
                    31..11233333122214788888888888888888877788888887777.5..44553344444444444.3333..56777777 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.2e-07    0.0037      45     187 ..     103     268 ..      97     274 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.2e-07
                   HHHHHHHHHHHHHTT....S--GGGEEEEEETHHHHHHH.....HHHHH-GGG-SEEEEESE---CCCHHCSTTS..THHHCCCC--TTT..CHHHH CS
  Peptidase_S9  45 fdDfiaaaealakeg....yvdserlaitGgSyGGyltg.....aalnqrpdlFkaavaevpvvdvlrydsdtdl..lteeymewgnpee..neegy 128
                   ++D ++ ++++ ++g     +d+ r+a+ G S GG l++     aal++ p      + +vpvvd++++  d++   ++e    + n  +    ++ 
    CDO71618.1 103 VEDAVDTLQWVYSQGkaelGIDPARIAVGGSSSGGNLAAilthkAALTEPPIPLVFQLLVVPVVDNTASAEDDRYpsWKE----NANTVSlvPAKMI 195
                   677777777776655422469**************98763333256666666666677889********99965444433....2222223345555 PP

                   HHHHHH-CGGG--.................---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SS CS
  Peptidase_S9 129 kelspyspldnvk.................aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHg 187
                   + +++ysp ++                   + p+  + ++++D  +   e++++ ++L+k+g++v+ ++++++ H 
    CDO71618.1 196 WFRNNYSPNKE-DwskwdnspifapdetfrKAPSAWIAVAELD--ILRDEGITYGEKLKKAGVPVETVVYKGAPHP 268
                   55566666444.2355666667777777788888888888888..5568999999999999999999999999884 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0026        12      91     115 ..      74      97 ..      71     100 .. 0.84
   2 ?    9.0   0.2   0.00012      0.55     163     204 ..     103     145 ..     100     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0026
                 EEEEESSSSSTTSSEEEEEEE--ST CS
  COesterase  91 nvytPkekkeakkklPVlVwihGgg 115
                  v+tP+ +   +++ PV++++hG++
  CDO71618.1  74 RVFTPEGE-PPEHGWPVFIFFHGEN 97 
                 69***996.677788********96 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHH.GGGGTEEEEEEEEEEETHHHHHHHHHHH CS
  COesterase 163 llDqvlALrWVken.IasFGGdpervtlfGesAGaasvsllll 204
                 + D v  L+WV  +  a+ G dp r+ + G+s+G+ ++++l+ 
  CDO71618.1 103 VEDAVDTLQWVYSQgKAELGIDPARIAVGGSSSGGNLAAILTH 145
                 5699999****7662678*******************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1813.73
//
Query:       CDO71619.1  [L=795]
Description: hypothetical protein BN946_scf184911.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-51  174.4   0.1      2e-51  173.9   0.1    1.3  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    2.2e-43  146.0   0.1    6.3e-21   74.0   0.0    3.5  3  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
    3.9e-13   50.3   2.8    1.2e-11   45.6   2.8    2.6  1  RBM39linker     linker between RRM2 and RRM3 domains in RBM39
    2.5e-11   44.0   0.9    3.2e-09   37.2   0.1    2.3  2  IlvC            Acetohydroxy acid isomeroreductase, catalytic
    5.2e-11   43.0   0.1    1.1e-10   41.9   0.1    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    2.8e-06   27.6   0.0    5.8e-06   26.5   0.0    1.5  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    1.6e-05   24.9   0.2     0.0061   16.6   0.0    2.7  2  RRM_3           RNA binding motif
    4.9e-05   22.8   0.0    8.9e-05   21.9   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    9.6e-05   22.2   0.0       0.23   11.3   0.0    2.5  2  RRM_occluded    Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.027   14.0   0.0         10    5.8   0.0    2.4  2  RRM_5           RNA recognition motif. (a.k.a. RRM, RBD, or R
      0.033   14.3   0.0      0.062   13.4   0.0    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.039   13.9   0.1       0.16   11.9   0.1    1.9  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.058   13.4   0.1        3.5    7.7   0.0    2.7  2  Nup35_RRM_2     Nup53/35/40-type RNA recognition motif
      0.097   11.7   0.0       0.15   11.1   0.0    1.2  1  PDH             Prephenate dehydrogenase


Domain annotation for each model (and alignments):
>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.1   1.5e-54     2e-51       1     165 []      16     183 ..      16     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 173.9 bits;  conditional E-value: 1.5e-54
                 HHHTS-EEEES-SHHHHHHHHHHHHTT-...-EEEEE-TT-HHHHHHHHTT-EEE.EHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESS CS
        IlvN   1 llkgkkiaviGyGsqGhaqalnlrdsgl...dvvvglregsksvkkAkeegfevl.tvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafah 95 
                 +lk+k+i+ +G+G+qG aqa+nlrdsg+   ++++++r ++ +++ Ak++gf+v  + a+a+k+ad++++liPD++q +v+++ei+pnlk+++a++ a+
  CDO71619.1  16 VLKDKTIVFLGFGNQGAAQAQNLRDSGIpndKIIIANRPDH-YAEDAKSKGFNVEhDFAKAAKEADIIFLLIPDQVQPRVFNNEIAPNLKDNAAIVVAS 113
                 59**************************9877999999998.9***********6269***************************************** PP

                 SHHHHTTSS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEEE-SSS-HHHHHHHHHHHTTHHHH- CS
        IlvN  96 GfnihfglikppkdvdvvlvAPkgpGhlvreeyeegkGvpaliaveqdasgkakelalayakgiGatraG 165
                 G+n+ ++l++ + + dvv+vAP++ G+ vr+ y++ kG p++++veqd +gka e+ala++++iGat+aG
  CDO71619.1 114 GYNVFYKLLNFKPSQDVVMVAPRMIGSSVRSLYTKHKGFPCFVSVEQDGTGKALEIALALSRAIGATKAG 183
                 *********************************************************************9 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   8.7e-11   1.1e-07       1      69 [.     466     537 ..     466     538 .. 0.93
   2 !   74.0   0.0   4.9e-24   6.3e-21       1      70 []     571     641 ..     571     641 .. 0.99
   3 !   36.5   0.0   2.5e-12   3.2e-09      21      69 ..     737     781 ..     730     782 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 8.7e-11
                 EEEESETTTSSHHHHHHHHHT...TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk...fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fV+ L+  +t ++L  +F++    G++ ++++v+d   ++skg+++VeF s e  ++A++ l g+ ++g ++
  CDO71619.1 466 VFVSQLAARLTARDLGYFFEDklgEGSVLDARIVTDrISRRSKGIGYVEFRSIELVDRAIA-LSGTVVMGLPI 537
                 79******************8655689**********************************.******99776 PP

  == domain 2  score: 74.0 bits;  conditional E-value: 4.9e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 l+Vg L++++te+++k++F++fG+ + ++l rd  tg+skg+afV+++  edA+ Ale+++g +l gr+l+
  CDO71619.1 571 LYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDpMTGRSKGYAFVQYKRAEDAKMALEQMDGFELAGRTLR 641
                 8*******************************************************************996 PP

  == domain 3  score: 36.5 bits;  conditional E-value: 2.5e-12
                 TTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  21 kfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 k+Gp++ ik+ +d    s+g  +V+F+s ++A+kA+e lng+ +ggr++
  CDO71619.1 737 KYGPVRAIKVEKD----SQGEIYVQFDSVDSAKKAIEGLNGRWFGGRPI 781
                 8***********9....******************************98 PP

>> RBM39linker  linker between RRM2 and RRM3 domains in RBM39 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   2.8     9e-15   1.2e-11       4      91 .]     660     722 ..     659     722 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 9e-15
  RBM39linker   4 ddrgGvnLnatsRaaLMakLarsgtalsipaaaaaalqnsaaaaeaataveaaapaeaklasvavpiatecllLkNMFdpaeEtepdW 91 
                  d+ gG nLna sR+aLM+kLar + a   p++ +                +         ++ +++++++ +lLkNMF+p+eEte dW
   CDO71619.1 660 DEAGGGNLNAASRQALMQKLARIDSA---PPKLEPV--------------QR--------PNIPQTMQSRSVLLKNMFNPEEETERDW 722
                  5789******************6653...2222211..............11........146799********************** PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.5e-12   3.2e-09       2      63 ..     190     252 ..     190     254 .. 0.95
   2 !    6.4   0.1    0.0077       9.9      96     139 ..     251     299 ..     250     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.5e-12
                 HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHT..HHHHHHHHHHHHHHHHH CS
        IlvC   2 keEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfecl..helklivdliyegGiak 63 
                 +eEt +Dlf Eq  L++ ++ l++ +F++l eaG+s+e+ ++e++  +e  +i++  +e+G+ +
  CDO71619.1 190 REETAMDLFAEQ-ALWPNIIMLFREAFSVLKEAGCSDEALCYEMWmsKEPAEIFERAAEDGFIQ 252
                 59**********.9******************************999999***********965 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0077
                 HHHHHTTHHHHHHHHH.....HHTTSHHHHHHHHHHHTSHHHHHHHHHH CS
        IlvC  96 leeiqsGefakeviee.....nkagrpelkklrkeeaeheiekvgkklr 139
                 ++++ +G+f++e+ +      ++ ++++l+ l k+++e+e+ +++k++ 
  CDO71619.1 251 IQQVLNGKFCQEFSKIeedleKEGDANPLNVLYKKSEETELGQAEKRVS 299
                 57999********98777885555999******************9986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   8.7e-14   1.1e-10       1      92 [.      21     109 ..      21     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 8.7e-14
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvi 92 
                    +i ++G+Gn+g+a a++l  +g ++ +i++a  + p+  +e a++ g +v++ d ++aa+ead+++l ++ ++ + v ++  + +lk+   i
     CDO71619.1  21 TIVFLGFGNQGAAQAQNLRDSGIPNDKIIIA--NRPDHYAEDAKSKGFNVEH-DFAKAAKEADIIFLLIPDQVQPRVFNNEIAPNLKDNAAI 109
                    599**************************88..66777788888889*****.**********************99987766666665554 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.6e-09   5.8e-06       2      91 ..      22     114 ..      21     119 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.6e-09
                    EEEE--SHHHHHHHHHHHHTT-...EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagy...kvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgst 91 
                    i f+G G+ G+  a+nl ++g+   k+++ nr    +e++ ++g+++ ++ +++++++d+++++++++ + + + ++++++lk ++ ++  s 
     CDO71619.1  22 IVFLGFGNQGAAQAQNLRDSGIpndKIIIANRPDHYAEDAKSKGFNVEHDFAKAAKEADIIFLLIPDQVQPRVFNNEIAPNLKDNAAIVVASG 114
                    889**************999853338*****************************************9999999999********99998875 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.7e-06    0.0061      10      60 ..     577     633 ..     568     655 .. 0.79
   2 ?    5.5   0.1     0.013        17      23      57 ..     736     771 ..     723     774 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.7e-06
                 SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEE......EEESSHHHHHHHHHHHHHC CS
       RRM_3  10 nkelsredikellsklgevayvdyekgdkege......vrFkedeeakkalekatea 60 
                 + +l+ +dik++++ +ge+++vd++++  +g       v++k +e+ak ale++  +
  CDO71619.1 577 HFNLTESDIKQVFEPFGELEFVDLHRDPMTGRskgyafVQYKRAEDAKMALEQMDGF 633
                 5578899*****************9877665333335599***********998665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
                 HCCS-ECEEEE-TTSS.EEEEEESSHHHHHHHHHHH CS
       RRM_3  23 sklgevayvdyekgdk.egevrFkedeeakkaleka 57 
                 +k+g+v+ + +ek+ + e +v+F++ ++akka+e +
  CDO71619.1 736 AKYGPVRAIKVEKDSQgEIYVQFDSVDSAKKAIEGL 771
                 68999999999987643889*************975 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     7e-08   8.9e-05      30     124 ..      13     110 ..       4     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7e-08
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-...EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEE CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgm...kviaydrskkkeeeeeelgvelv.sleellaesDivslhlpltpetrhlinaeelakmkkgai 122
                       l++kt+  +G+G+ G a a+ l+  g+   k+i+ +r  +  e+++++g++++ ++ ++ +e+Di++l +p + +   ++n+e    +k++a 
    CDO71619.1  13 NLDVLKDKTIVFLGFGNQGAAQAQNLRDSGIpndKIIIANRPDHYAEDAKSKGFNVEhDFAKAAKEADIIFLLIPDQVQ-PRVFNNEIAPNLKDNAA 108
                   556799*********************9999888999999999988899999**7777*****************6555.45677777777777776 PP

                   EE CS
  2-Hacid_dh_C 123 li 124
                   ++
    CDO71619.1 109 IV 110
                   66 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00018      0.23      14      75 ..     581     647 ..     576     648 .. 0.77
   2 !    8.1   0.0    0.0019       2.4      23      69 ..     735     782 ..     726     789 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
  RRM_occluded  14 nkariralveekegeikkivLvpd......heGAivefkdekiagkasLaLdgsefegkklrcGtvkd 75 
                   +++ i++++e+  ge++ + L+ d      ++ A+v++k +++a  a+ ++dg e++g++lr+ tv++
    CDO71619.1 581 TESDIKQVFEPF-GELEFVDLHRDpmtgrsKGYAFVQYKRAEDAKMALEQMDGFELAGRTLRVNTVHE 647
                   667788888888.777777666553233324459******9998777779***************986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
  RRM_occluded  23 eekegeikkivLvpdheGAi.vefkdekiagkasLaLdgsefegkklr 69 
                   e k g+++ i ++ d +G i v+f+++ +a ka+  L+g  f g+ ++
    CDO71619.1 735 EAKYGPVRAIKVEKDSQGEIyVQFDSVDSAKKAIEGLNGRWFGGRPIS 782
                   55559*************8779**********************9987 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0086        11      54      98 ..     600     644 ..     550     664 .. 0.75
   2 ?    5.8   0.0    0.0078        10      50      96 ..     737     783 ..     734     788 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0086
       RRM_5  54 vervkflktkketalvqmgdasaveravqHLnnaklfgkrleval 98 
                 ++r  +    k++a+vq   a +++ a++ + + +l g+ l+v  
  CDO71619.1 600 LHRDPMTGRSKGYAFVQYKRAEDAKMALEQMDGFELAGRTLRVNT 644
                 45555556679****************************999865 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0078
       RRM_5  50 lYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlev 96 
                  Yg v+ +k+ k  ++   vq  +  ++++a++ Ln+    g+++ +
  CDO71619.1 737 KYGPVRAIKVEKDSQGEIYVQFDSVDSAKKAIEGLNGRWFGGRPISA 783
                 6************************************8877777765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-05     0.062       7      81 ..      14      84 ..      10     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
                  HS..TT-EEEEES-SHHHHHHHHHHHCCT-..CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH  7 leslkekkvlliGaGemaelvakhLlakgv..kkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvis 81
                  l+ lk+k+++ +G G+ +   a++L ++g+  +k+++aNR  + a++  ++  ++       ++  ++ +ead+++ 
    CDO71619.1 14 LDVLKDKTIVFLGFGNQGAAQAQNLRDSGIpnDKIIIANRPDHYAEDAKSKGFNV------EHDFAKAAKEADIIFL 84
                  6789************************975478******998888865554222......3577778899999985 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.16      54     102 ..      63     112 ..      21     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                     -TTEEEES-HHHHHTT--EEEE---HHHHHHHHH.HHCCC--TT-EEEE- CS
  NAD_Gly3P_dh_N  54 penlvattdlaealkgadiivlvvPsqalrevlk.klkgllkkkailvsl 102
                     ++   ++ d+a+a+k+adii+l +P q+  +v++ ++++ lk++a++v +
      CDO71619.1  63 SKGFNVEHDFAKAAKEADIIFLLIPDQVQPRVFNnEIAPNLKDNAAIVVA 112
                     45677899*********************999862689999999888865 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.1   1.3e+02      33      53 .]     601     627 ..     582     627 .. 0.75
   2 ?    7.7   0.0    0.0027       3.5      23      52 ..     737     767 ..     735     768 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.1
  Nup35_RRM_2  33 p......kevsvmyvkfesekdaekAL 53 
                         +++ +++v+++   da++AL
   CDO71619.1 601 HrdpmtgRSKGYAFVQYKRAEDAKMAL 627
                  3444555678899*************8 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0027
  Nup35_RRM_2  23 sfGeIvkhyvp.kevsvmyvkfesekdaekA 52 
                   +G++  + v+ +++  +yv+f s ++a+kA
   CDO71619.1 737 KYGPVRAIKVEkDSQGEIYVQFDSVDSAKKA 767
                  5899999999999999**************9 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.15       2      76 ..      35     110 ..      34     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                 HHHHHHTT.--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-GGGHHHHH.HHHHHHS-TT-EEE CS
         PDH   2 aralrrkg.fkvtvigydideekaeaalelglvdeatddieavkeadivvlavPvevilevl.kelaphlkedalit 76 
                 a+ lr +g ++ ++i  ++ +  ae a+  g   e +   +a+keadi++l +P +v  +v  +e+ap lk +a i+
  CDO71619.1  35 AQNLRDSGiPNDKIIIANRPDHYAEDAKSKGFNVEHDF-AKAAKEADIIFLLIPDQVQPRVFnNEIAPNLKDNAAIV 110
                 56777777446677777777777777766665555555.799************99998887358999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 4746.55
//
Query:       CDO71620.1  [L=219]
Description: hypothetical protein BN946_scf184911.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-48  163.8   0.0    5.4e-48  163.6   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.2e-31  107.9   0.1    5.5e-31  107.5   0.1    1.2  1  adh_short     short chain dehydrogenase
      8e-05   22.6   0.0    0.00036   20.5   0.0    1.9  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.0   9.1e-52   5.4e-48      31     233 ..       5     214 ..       1     215 [. 0.93

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 9.1e-52
                   HHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHH.....HHHHHCTSC.. CS
  adh_short_C2  31 kkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllak.....aalplmkeg.. 120
                   k+++e+l ++ +  +++ D++ +e+  ++vee v+ f+++D+lv nagi+p   ++fl+++ e ++r+ +vnl + f++++     a+++ mk++  
    CDO71620.1   5 KEQIESLYANAKVVAVPGDIALRETSMKVVEEGVKAFQRIDVLVSNAGICPF--ADFLTMPPETWERTRQVNLDGSFYITQgdhrtAVANQMKNQvp 99 
                   678888888777778*************************************..*************************984444344447887788 PP

                   ..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHC CS
  adh_short_C2 121 ..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLa 215
                     gsi+ +ss++a ++ + + +y+ +Ka++ +l++++Av lg+++iR Nav pg ++T ++++  ++ + +e + +r+ lgrlg p+++a  ++fLa
    CDO71620.1 100 qgGSIIGISSISALVGGEYQCHYTPTKAGILSLMQSCAVALGKYNIRANAVLPGTVETHINKEDLSNAAKREGMVKRTALGRLGAPDDIAGPVVFLA 196
                   89***********99999999***************************************9999999999*************************** PP

                   SGGGTT--SEEEEESTTG CS
  adh_short_C2 216 sdeasyitGqtlvvDgGl 233
                   sd+a+y+tG+++ vDgGl
    CDO71620.1 197 SDLAKYVTGAQVLVDGGL 214
                   *****************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.1   9.3e-35   5.5e-31      40     191 ..       4     164 ..       1     168 [. 0.92

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 9.3e-35
                 HHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHH.....HHHHHHH..HCTTE CS
   adh_short  40 vakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltr.....avlpaml..kqssG 129
                 ++++++++  +ak++a+++D++ re   ++ve+ vk ++++dvLv NAGi  +++f  +  e+wer+ +vNl g f +t+     av+++m+    ++G
  CDO71620.1   4 LKEQIESLyaNAKVVAVPGDIALRETSMKVVEEGVKAFQRIDVLVSNAGICPFADFLTMPPETWERTRQVNLDGSFYITQgdhrtAVANQMKnqVPQGG 102
                 5666676666899******************************************************************86666689999**65569** PP

                 EEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 130 rIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 +I+ +sS+ ++v+ + ++ Y+ +Ka++ +l++s a  l +++ir nav PG v+T ++ke  
  CDO71620.1 103 SIIGISSISALVGGEYQCHYTPTKAGILSLMQSCAVALGKYNIRANAVLPGTVETHINKEDL 164
                 *********************************************************99865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.1e-08   0.00036      45     154 ..       8     127 ..       2     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.1e-08
                 HHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...........S--SEEE CS
          KR  45 iaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled...........esldffv 132
                 i++l a +a+v +v+ D++ ++   +++ee  + +++i   +  Ag+   + + +m  e++e+  +  ++G+  + +  ++            +   ++
  CDO71620.1   8 IESLYA-NAKVVAVPGDIALRETSMKVVEEGVKAFQRIDVLVSNAGICPFADFLTMPPETWERTRQVNLDGSFYITQGDHRtavanqmknqvPQGGSII 105
                 444443.789**************************************************************999763332222334443444556799 PP

                 EEEEHHHHH--TT-HHHHHHHH CS
          KR 133 lfSSiagllgsagqanYaaaNa 154
                  +SSi++l+g   q++Y+ + a
  CDO71620.1 106 GISSISALVGGEYQCHYTPTKA 127
                 9****************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1510.64
//
Query:       CDO71621.1  [L=196]
Description: hypothetical protein BN946_scf184911.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0003   20.4   0.0     0.0017   18.0   0.0    2.2  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.08   1.4e+03       3      16 ..      91     104 ..      89     111 .. 0.78
   2 !   18.0   0.0   9.5e-08    0.0017      24      69 ..     129     175 ..     114     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.08
                 EEEETTEEEEEECS CS
     Cupin_2   3 velppGesapshrH 16 
                   l+pG++  +hr 
  CDO71621.1  91 TDLAPGATVAAHRT 104
                 57899999999985 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 9.5e-08
                 EEEESEEEEE.ECTEEEEE.ETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2  24 yVleGegelt.vdgeevel.eaGdsvyfpagtpHrfrNtgdeparllv 69 
                  V++G+++l+  dg e+ l ++Gd+v + +gt H++rN+g + ar++ 
  CDO71621.1 129 TVVSGKLVLImEDGSETLLdKPGDLV-VQRGTIHAWRNPGADWARWIT 175
                 59********8887766664889975.899***********9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1390.55
//
Query:       CDO71622.1  [L=364]
Description: hypothetical protein BN946_scf184911.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-114  382.8   1.0   1.4e-114  382.6   1.0    1.0  1  Pex16     Peroxisomal membrane protein (Pex16)


Domain annotation for each model (and alignments):
>> Pex16  Peroxisomal membrane protein (Pex16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.6   1.0  7.9e-119  1.4e-114       2     324 .]       7     357 ..       6     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 382.6 bits;  conditional E-value: 7.9e-119
       Pex16   2 aYekfvlknasqvsqiEstlrsltyilpgrfrdaeiasEalysllnLlslyhDslLeravks........ppseharytrawtkksklyrrvalvLqvv 92 
                 +Ye+f+++++s++s++Es+lrs+t+ilpgrf+dae+asEal+++ln++s+yhD+lL+r++++        p+s+h+rytraw++k++ y+++a++L+++
  CDO71622.1   7 RYESFLVAHVSTISSLESSLRSITWILPGRFKDAELASEALSATLNVMSMYHDTLLARVAETdpkykpliPSSAHTRYTRAWCEKDARYKWAARALELI 105
                 7*********************************************************88779*******99*************************** PP

       Pex16  93 eytelllEmaakrklGekgrWrvvvlieaiKavlRllLlrltksrpllspplperevdpeeleeeeekkewtlkrtgrvlpslassgd........... 180
                 ++tell+Em+++rk+++k+rWr +vl+e+iKa+lRl+L+r+t+ rpllspp+pere+dpe+ ++ +++++ tl  +    + l+++++           
  CDO71622.1 106 RFTELLVEMGLRRKVSRKTRWRGIVLLEVIKALLRLALIRITR-RPLLSPPIPEREFDPENIPAGSDTSSPTLAPSSPPSSVLSTPEHlknnhvplpvh 203
                 *******************************************.**********************977777776666666666555577777888888 PP

       Pex16 181 ..............issyllskvltaddikpptkllrrlkg.saqlAEvlyilrPlvyvlalrrygrrswkPwllslalellsrqlrklrtkkkkslsa 264
                               +++yll k+lt++++k+pt+l+++l++ +++lAE++y lrPlvy+++l+  gr++ kP++++la+ell+++lr+     ++++ a
  CDO71622.1 204 plltppppshspipVEEYLLPKALTTASVKAPTSLVKPLASpKEWLAEIIYHLRPLVYAIMLSS-GRKDNKPLMTALAMELLALNLRR----VPSQSAA 297
                 888888888889**99***********************************************7.***********************....799**** PP

       Pex16 265 lereelsrRklallwyllRgpfyekvtkpkleglakrlesvpllglvgglledylplwde 324
                 ler+e++rR+++++wyllRg+++e++t+pkleg+a+++ + pl+g++g+l++d++pl+de
  CDO71622.1 298 LERSEYARRDRDIIWYLLRGSIWENWTRPKLEGFANKTANTPLIGVFGALVKDWIPLIDE 357
                 **********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2606.23
//
Query:       CDO71623.1  [L=509]
Description: hypothetical protein BN946_scf184911.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.5   8.7       0.24   11.7   8.7    1.3  1  OmpH      Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   8.7   1.4e-05      0.24      23     101 ..     400     492 ..     392     499 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.....-HHHHHH........HHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHH CS
        OmpH  23 qlekkfkklqaeleakekelqklqeelqkkakkl.e...keekeqe........lqkkeqelqqkqqqka....qelqkkqqellkpildkinka 101
                 q+ +k+ k ++e ea+ +el+kl+ ++q + +++ +   k e+ qe        l + +q++++ q+++     +++++kqqe+l ++l  +++ 
  CDO71623.1 400 QM-SKYVKTANEAEALSDELEKLRLTYQCEIQTMrDlcmKVEESQErvrieterLHRDQQAVRA-QENRLlantEQIEQKQQEFLSKVLAALEES 492
                 44.3344778899999999999999999999998779984444444555565566666666666.333335777889999999888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1661  (0.0926432); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3619.32
//
Query:       CDO71624.1  [L=1051]
Description: hypothetical protein BN946_scf184911.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-41  140.1  22.9    6.2e-41  140.1  22.9    3.5  4  RRP36     rRNA biogenesis protein RRP36
    1.8e-18   66.9   7.3      3e-12   46.5   0.2    3.4  3  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.19   11.7   0.0    1.4  1  Ninjurin  Ninjurin
       0.13   12.7   1.7       0.36   11.2   0.1    2.4  2  FAM177    FAM177 family
        2.8    7.1   5.0       0.81    8.8   0.1    2.3  2  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   2.9       3.2   1.2e+04      76     121 ..      55     100 ..      31     109 .. 0.64
   2 !  140.1  22.9   1.7e-44   6.2e-41       1     166 []     114     293 ..     114     293 .. 0.92
   3 ?   -3.4   1.1       2.2     8e+03       1      22 [.     443     464 ..     430     475 .. 0.49
   4 ?    0.3   0.0      0.17     6e+02      11      38 ..     670     694 ..     667     705 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.2
       RRP36  76 eeekeelkrelqrlesrekerekkererevlkelkkeekekvkegk 121
                      +++++l ++++ + e+e  + ++e ++e+ ++ +   ++gk
  CDO71624.1  55 FGALRKAQKALAKVQADDSEEEASDYASESEAEFGSNSESVRDKGK 100
                 3455788888888888888888888888888888777655555565 PP

  == domain 2  score: 140.1 bits;  conditional E-value: 1.7e-44
       RRP36   1 rkskhaPtevsskkpvsrkrevvkvkkkksrDPRFdslsgeldedlfeknYaFLdeyrekEleelkkelkkekd.......k.....eeekeelkrelq 87 
                 rk+khaPte+ssk+pv+r++  + ++k+  rDPRF + +ge+d+++f+ +Y+FL e +e+El++lk++lk+ ++             e+e+++l+r+++
  CDO71624.1 114 RKHKHAPTEMSSKRPVPRMKLAT-EPKPAPRDPRFLPITGEFDPKRFHTQYGFLAELHEQELKTLKENLKRARKllansprDlreerEAEVQRLERAVK 211
                 89*****************9976.479999****************************************766655554440444569999******** PP

       RRP36  88 rlesrekerekkererevlkelkkeekekvkegkkpfflkksekkklllkekfeelk...kkkklekaierkrkKnasKekk 166
                 r+es  ++ ++++ + e+l+++ kee+ek ++gkk++++k+++kk lll++k+e l+   +++++ kaie+k+kK+++Kekk
  CDO71624.1 212 RAESLVNKDRQEKVQLEALSKVAKEEREKRQQGKKAWYMKDADKKALLLRAKYEALAsegGRGAVRKAIEKKQKKVSQKEKK 293
                 *********************************************************776666******************8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.2
       RRP36   1 rkskhaPtevsskkpvsrkrev 22 
                 r++k++P+ + + ++ +  rev
  CDO71624.1 443 RRRKRRPRSLATVHNARSEREV 464
                 3334444444444444444443 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.17
       RRP36  11 sskkpvsrkrevvkvkkkksrDPRFdsl 38 
                  s+k  +r+r+++   ++  +DPRF + 
  CDO71624.1 670 ESQKTRERLRNLL---STDDEDPRFTDE 694
                 5777778888887...34458****875 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.7      0.13   4.6e+02     105     198 ..     159     254 ..     145     269 .. 0.62
   2 !   46.5   0.2   8.4e-16     3e-12       5     187 ..     615     820 ..     612     833 .. 0.85
   3 !   21.8   0.0   2.7e-08   9.7e-05     132     292 .]     861    1038 ..     810    1038 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.13
        CorA 105 pkspgellyrlldeivdrlfellekleeeldeledel..edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdll 198
                 +++ +++l++l ++ +++l e l+   + l    + l  e++ + + l++ ++  ++lv+  r+ + + e+l+++ + +++k+   +++ y++d  
  CDO71624.1 159 FHTQYGFLAELHEQELKTLKENLKRARKLLANSPRDLreEREAEVQRLERAVKRAESLVNKDRQEKVQLEALSKVAKEEREKRQQGKKAWYMKDAD 254
                 555556666666666666666666666666666666644444444455555555566777777777777777666666666666666666666655 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 8.4e-16
        CorA   5 vWldlsspteeeleeLaeelgldelaledlldseerprve..dyddylllvlpsveldkseeeeeev...................plsillgdnflit 82 
                  Wld+sspt e++ ++ + l+l++l+led+l+++ r ++e     +y +++++++e +k  e+ +++                   ++ +++ ++ + +
  CDO71624.1 615 WWLDVSSPTWEDMCAIGKLLHLHPLTLEDILTQDPREKLElfPKLGYYFISFRAIESQKTRERLRNLlstddedprftdegvvgevNVYLIIFREGICS 713
                 5***************************************998999*****************9999*****************88888899******* PP

        CorA  83 vrrep.lealdevikrlk.deggkpkspgellyrlldeivdrlfellekleeeldeledel.edstkkeilrelaqlrrrlvklrralapnrevlkrll 178
                 ++ ++  e +d v+ r++   ++  +s+ ++ + ++d+ivd++f+ le +e+e+ e+e+ +  d+  ++ ++e +   ++     + ++++++   +++
  CDO71624.1 714 FHFADiAEHVDRVRTRIMlLGESINTSSDWIAHGIMDSIVDSFFPFLEVIEREVLEIENIVfTDNGPNPPVKESVSASQSGSSATDTALTSERHG-SIV 811
                 *****77889********98889999999******************************997666666666666655555555555555555555.555 PP

        CorA 179 akaddklld 187
                 + ++++ +d
  CDO71624.1 812 EPDEKHSID 820
                 555555555 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 2.7e-08
        CorA  132 eeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrlla....kaddkllddedkey.....lrdlldelerllemlealrerleslq 219 
                   + + +++   d ++ + + ++a+ rr ++ l r+la + ev++++++    +++ +l + ++ ++     + d++d++  l++ l ++ ++l++ +
  CDO71624.1  861 PRFKAIDTHAADGNQPSTIHRIARTRRLVTSLSRYLAVKSEVVTQVKKrlliQGEWGLGTGTEDDLdvfvyMGDVQDHIITLQQALAHYERMLNQSH 957 
                  5667888889999******************************9777777774444433333333333556************************** PP

        CorA  220 dtyssllser.......lNrvmkvLTvltaiflPlTlitGiyGmNfkglP...elewsygypfvlllglmallailllfwfkr 292 
                   +y s+l            + +  LT +++ +l +  + G++ mN +  P      + y  +f++++++++ + ++  f+++r
  CDO71624.1  958 PAYLSQLRLLgskskssSDKAIVSLTAISMGVLFMQTLLGLMSMNCE-VPhdpDGSHRY-DVFATVIAIAVFIITVYGFVVRR 1038
                  ******99999999999**********999887777799********.99654233333.35555677777777777777776 PP

>> Ninjurin  Ninjurin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.2e-05      0.19      25      99 ..     962    1035 ..     958    1038 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
    Ninjurin   25 sqLkavlesgekskfyiallvLislSllLqvvvgilliliasklnlekekk...errlnklnnaatilvfvitviniv 99  
                  sqL+++ ++ + s+   a + L  +S+ + ++  +l +++   +n+e  ++   ++r++++ +++ i vf+itv  +v
  CDO71624.1  962 SQLRLLGSKSK-SSSDKAIVSLTAISMGVLFMQTLLGLMS---MNCEVPHDpdgSHRYDVFATVIAIAVFIITVYGFV 1035
                  88888777777.4444555555566666666666665552...34444444212668999999999999999997665 PP

>> FAM177  FAM177 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.36      19      76 ..       9      67 ..       2      70 .. 0.87
   2 ?   -0.5   0.2      0.42   1.5e+03      29      58 ..     230     260 ..     203     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
      FAM177 19 riiyFadgevmeeysteeeeeeekeekdlasqldeskltwgpy.lrfkalrvatkslsg 76
                r++ ++d +++e++s+ee+ + +++e++ ++++d+ +l+   + l f alr a+k+l+ 
  CDO71624.1  9 RVVQWVDEDTLEDLSDEESINGSDDEEEEVEEVDHDRLEADLKaLPFGALRKAQKALAK 67
                9999***************999999999999*****99887543889999999999986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.42
      FAM177  29 meeysteeeeeeekeekd.lasqldeskltw 58 
                 +  +++ee e++++ +k  ++++ d++ l +
  CDO71624.1 230 LSKVAKEEREKRQQGKKAwYMKDADKKALLL 260
                 4556677777777777767888888888754 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.7      0.37   1.3e+03     112     166 ..      68     123 ..      55     247 .. 0.68
   2 ?    8.8   0.1   0.00023      0.81      28      89 ..     970    1030 ..     959    1042 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.37
         Zip 112 kkasssssesaakksvsndkveeseek.edhvaeadtdadskeelrngkqeksese 166
                  +a++s++e+++  s s+ ++ +++e+ +d+++  ++ +++ke  ++++++ + + 
  CDO71624.1  68 VQADDSEEEASDYASESEAEFGSNSESvRDKGKAREEPRPKKEVPKRKHKHAPTEM 123
                 45566666666666666666666655513333333333333333333333333332 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00023
         Zip   28 iskllsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflll 89  
                  +sk++s++++  l+a+++Gvl+   +l L+   +e  ++++ ++++  ++a ++++  f+++
  CDO71624.1  970 KSKSSSDKAIVSLTAISMGVLFMQTLLGLMSMNCEVPHDPDGSHRYD-VFATVIAIAVFIIT 1030
                  5566899*****************************99999877544.55555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1913  (0.106699); expected 358.6 (0.02)
Passed bias filter:                      737  (0.0411066); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.50
# Mc/sec: 6374.58
//
Query:       CDO71625.1  [L=209]
Description: hypothetical protein BN946_scf184911.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-23   81.5   0.0    8.5e-23   80.8   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.19   11.4   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   9.5e-27   8.5e-23       2     149 ..       3     161 ..       2     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 9.5e-27
                 EEEEEES--STT-HHHHHHHHHHCCT-T............T-CEEEEETTTS.--...---HCHGHT......CGGSHHHHHHHHHHHH-SCEEEEEEE CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkea...........gaevelidladlilpc.alcdkdlese......gqtsddvaellekiaaadaliivtPe 82 
                 k++++ GSlr+++n+  +a w+   l+e            g++v ++d  + +lp   ++d+ +  +      ++++++v+e+   ++++ ++++ +Pe
  CDO71625.1   3 KVALLLGSLRRPGNGIGIASWLHPVLREGlndtssgtahtGVDVVFVDPTKPPLPLgPIVDGSHVPAdirdpsKHPNPNVREFATFVTSCNGIVVLSPE 101
                 9***********************9987799999999999********999888877444444433356666899************************ PP

                 CTTCE-HHHHHHHHCHT-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHH.HTT-EEEECSEEE CS
     FMN_red  83 YngsysgllKnalDrlsrtrgkkelrgKpvalvavgggrrgglraeeqlrqvla.elgaivvpraava 149
                 Yn +y+g lKn +D+l     + e+++Kpv+lv++g+  +gg+++ + lr+ l   l+++v  + ava
  CDO71625.1 102 YNRGYPGELKNTFDHL-----YWEWHKKPVLLVTYGS--SGGANCSALLRSFLGgPLKMQVAEK-AVA 161
                 ****************.....9***********8885..6**************77*****999.665 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05      0.19      53     105 ..      66     119 ..      39     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.2e-05
                   CCHCC.HHHHTTC.HHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS- CS
  Flavodoxin_2  53 dlaak.layeekp.adveseqiekllaadaivlqfPlwwfgvPailKgwiDrvlt 105
                   ++ a+ +++ ++p ++v++ +   + ++  iv+ +P ++ g+P  lK+ +D+ ++
    CDO71625.1  66 HVPADiRDPSKHPnPNVREFA-TFVTSCNGIVVLSPEYNRGYPGELKNTFDHLYW 119
                   555554455555669999999.999**************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1478.50
//
Query:       CDO71626.1  [L=1224]
Description: hypothetical protein BN946_scf184911.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 7670.20
//
Query:       CDO71627.1  [L=373]
Description: hypothetical protein BN946_scf184911.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-31  108.6   0.1    6.1e-31  107.8   0.0    1.4  2  DUF2235   Uncharacterized alpha/beta hydrolase domain (DUF223


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0   3.4e-35   6.1e-31     113     287 ..       2     190 ..       1     191 [. 0.89
   2 ?   -3.7   0.2      0.33     6e+03     246     256 ..     328     338 ..     300     356 .. 0.50

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 3.4e-35
     DUF2235 113 lagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekk........aekkekekasrsevkikflGvfDTVgslGipesalleka..akk 201
                 +a ++  +G+l + +++++++++ +y+kr k++d ++ ++ +e   +        a  k++ +a    +++k++GvfDTVgs+G+pe  +l++a  ++ 
  CDO71627.1   2 VAMFIGAIGVLDRTEMDNFATIFVTYQKRGKETDPDEIQKLDE---QllpwigphAPGKRRADAGPYGFSVKVVGVFDTVGSFGMPEELTLRNAkmKSL 97 
                 7899************************877655555544443...235799998888899999999*******************9999887777888 PP

     DUF2235 202 lpftdaklsssvkharhalaldErrakFkptlwekekekeekee...........eekeqdlkevwFpGvHsdvGGGyeeneekeelsdipLawmvr 287
                 + f d+ l s+v++a++alal+E+ra+F+ + +e+++e ++k +            ++ +++  ++ +G+H+d+GGGyee++    lsdi+L+wm++
  CDO71627.1  98 FGFPDRLLGSHVERAYQALALNEHRADFDCAKFEQTEEGRKKGQvlrqvrvtyryVTQAEEICSIFCAGSHCDIGGGYEEHD----LSDITLNWMIS 190
                 99999999***************************998888777********999999999999**************7777....*********96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.33
     DUF2235 246 eekeqdlkevw 256
                 ++++++l+e  
  CDO71627.1 328 DRSQHHLHEHR 338
                 22222233332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2537.45
//
Query:       CDO71628.1  [L=289]
Description: hypothetical protein BN946_scf184911.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.9e-108  360.6  17.3   6.7e-108  360.4  17.3    1.0  1  SNAP         Soluble NSF attachment protein, SNAP
    3.2e-06   26.8   5.7      0.017   15.1   0.1    4.2  4  TPR_7        Tetratricopeptide repeat
     0.0002   21.6  18.0    0.00026   21.2   6.9    3.6  4  TPR_12       Tetratricopeptide repeat
     0.0051   16.0   9.0      0.015   14.5   7.6    2.2  2  Spatacsin_C  Spatacsin C-terminus
     0.0059   17.2  11.2        3.1    8.6   0.1    6.0  5  TPR_6        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   14.9   0.4      0.058   13.3   0.4    2.0  1  TC1          Thyroid cancer protein 1
      0.045   14.0   0.1      0.045   14.0   0.1    4.5  5  TPR_8        Tetratricopeptide repeat
      0.069   12.8   8.4        5.7    6.7   0.2    4.9  5  TPR_11       TPR repeat
      0.089   12.9   0.2        1.2    9.2   0.0    2.3  2  DUF4351      Domain of unknown function (DUF4351)
       0.19   11.9   2.7        1.1    9.5   0.0    2.9  2  THDPS_N_2    Tetrahydrodipicolinate N-succinyltransferase N-t
       0.43   10.9   2.7        6.9    7.0   0.1    2.7  2  PerC         PerC transcriptional activator
       0.77   10.0  19.9        2.4    8.5   1.0    5.5  6  TPR_2        Tetratricopeptide repeat
        3.4    8.7   5.1        1.1   10.2   0.2    2.5  2  Rotamase     PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.4  17.3  4.9e-111  6.7e-108       3     281 ..       7     282 ..       5     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 360.4 bits;  conditional E-value: 4.9e-111
                 HHHHHHHHHHHSS---THHHHH--SHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH CS
        SNAP   3 aeellakAekklksssglfslfgsksskaeeAadlyeqAAnayklakkweeAgeaflkaAecqeklkekdeaanayveAakcykkvspeeAvealekAi 101
                 a++ll+kA+kk++ss+g+   f+s s+k+eeA dly+qAAn++k++k ++eAg+a+++ Aec+ek++e++eaana+++Aak+yk+v+p  Av+al+++i
  CDO71628.1   7 AQTLLEKADKKANSSTGW---FSSASTKFEEAGDLYQQAANQFKIDKLFKEAGDAHAREAECREKCQENNEAANAWWNAAKAYKRVDPGLAVQALDHTI 102
                 799**********99765...59**************************************************************************** PP

                 HHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-TTTGGGHHHHHH CS
        SNAP 102 eiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAieiyekvakkslennllkysvkeyfl 200
                 +++t++grfr+aA+++kei+++y +el+dl+kA+e++e+Aae+y+qe+a+a+an c++++A+l+aele+y++Ai++ye+va+ sl++ l+kysvkey+l
  CDO71628.1 103 SHLTKAGRFRQAADREKEIGQIYLQELNDLRKACESFERAAEWYSQEDATATANACYKDAADLHAELEEYPQAIALYEQVANGSLSSPLTKYSVKEYWL 201
                 *************************************************************************************************** PP

                 HHHHHHHHTT-HHHHHHHHHGGG-----------HHHHHHHHHHHHTT-TTTHHHHHHHHTTSS---HHHHHHHHHHHHHH CS
        SNAP 201 kaglcrLaagDvvaakralekyeeldpsFassrEakllkdlleaveegdvekfteavkefDkiskldkWkttlLlkiKksi 281
                 ++ lc+La+gD+v+akr+l+ky +ld++F+s+rEak++++l++a+e+gd e+ft av efD+++kld+Wkt++Llk+K+ +
  CDO71628.1 202 RSSLCALAMGDAVTAKRNLTKYGSLDTTFTSTREAKFVNALIDALEAGDLEAFTGAVVEFDQVTKLDNWKTSILLKVKRGL 282
                 ******************************************************************************975 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.21   2.9e+02      13      25 ..      30      42 ..      23      54 .. 0.80
   2 ?   -2.6   0.0       5.4   7.5e+03      11      19 ..     107     115 ..     105     116 .. 0.79
   3 !    9.6   0.2   0.00071      0.98       5      34 ..     121     150 ..     119     152 .. 0.80
   4 !   15.1   0.1   1.3e-05     0.017       4      26 ..     161     183 ..     158     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.21
       TPR_7 13 GdyeeAielyeqs 25
                 ++eeA +ly+q+
  CDO71628.1 30 TKFEEAGDLYQQA 42
                5899*******95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.4
       TPR_7  11 rlGdyeeAi 19 
                 + G++++A+
  CDO71628.1 107 KAGRFRQAA 115
                 679999997 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00071
       TPR_7   5 Larlysr.lGdyeeAielyeqsLalt.kdped 34 
                 ++++y + l+d ++A e +e+  a + +++ed
  CDO71628.1 121 IGQIYLQeLNDLRKACESFER--AAEwYSQED 150
                 79999999*************..555466555 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 1.3e-05
       TPR_7   4 nLarlysrlGdyeeAielyeqsL 26 
                   a+l+ +l +y +Ai lyeq+ 
  CDO71628.1 161 DAADLHAELEEYPQAIALYEQVA 183
                 569******************55 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.18   2.4e+02      18      32 ..      31      45 ..      27      49 .. 0.76
   2 ?    4.4   0.5     0.034        47      19      73 ..      52     103 ..      46     107 .. 0.84
   3 ?   -1.8   0.0       2.9     4e+03      56      70 ..     106     120 ..     103     121 .. 0.76
   4 !   21.2   6.9   1.9e-07   0.00026       9      71 ..     121     182 ..     113     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
      TPR_12 18 rydeAlellekalei 32
                +++eA +l+++a ++
  CDO71628.1 31 KFEEAGDLYQQAANQ 45
                578888888888766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.034
      TPR_12  19 ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 + eA + + +  e +++ ++  + ++a++  n + +y +  ++  A+++l +++ 
  CDO71628.1  52 FKEAGDAHAREAECREKCQE--NNEAANAWWNAAKAYKRV-DPGLAVQALDHTIS 103
                 68999999999999999954..557************999.99999999987765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.9
      TPR_12  56 ralgryeeAlellee 70 
                  ++gr+++A ++ +e
  CDO71628.1 106 TKAGRFRQAADREKE 120
                 578999999987765 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 1.9e-07
      TPR_12   9 laavl.rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +++++ ++l ++ +A+e +e+a e +++   +  + + +++ + ++l+ +l++y +A++l+e++
  CDO71628.1 121 IGQIYlQELNDLRKACESFERAAEWYSQE--DATATANACYKDAADLHAELEEYPQAIALYEQV 182
                 67888577******************888..555555679**********************97 PP

>> Spatacsin_C  Spatacsin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   7.6   1.1e-05     0.015     103     212 ..       9     163 ..       4     176 .. 0.81
   2 ?   -1.7   0.0      0.89   1.2e+03     182     222 ..     207     247 ..     172     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
  Spatacsin_C 103 lLlrkklekaesglktAllsylkekqpedkekfelvalhFs...myrEiAelleeeA..rkqlekiksqa............................ 167
                  +Ll+k ++ka+s   t   s   +k  e  ++++ +a++F+   +++E ++ + +eA  r+++++ +  +                            
   CDO71628.1   9 TLLEKADKKANS--STGWFSSASTKFEEAGDLYQQAANQFKidkLFKEAGDAHAREAecREKCQENN--Eaanawwnaakaykrvdpglavqaldhti 102
                  688888888777..7888899999999999**********633368899888877771145555553..23478888888888999999999999999 PP

  Spatacsin_C 168 ................eqklkeseelkkeLqsalenfteAaenylkenklrlaqkcvskae 212
                                  ++  +   ++ ++L +a+e+f  Aae y++e++  +a+ c + a+
   CDO71628.1 103 shltkagrfrqaadreKEIGQIYLQELNDLRKACESFERAAEWYSQEDATATANACYKDAA 163
                  9999999999999886444556667799*****************************9885 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.89
  Spatacsin_C 182 qsalenfteAaenylkenklrlaqkcvskaeLvaLQlklln 222
                    a+ + + A  n  k  +l ++ +++++a+ v+  ++ l+
   CDO71628.1 207 ALAMGDAVTAKRNLTKYGSLDTTFTSTREAKFVNALIDALE 247
                  45777788888888888888888888888888887777666 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.41   5.7e+02      14      30 ..      30      46 ..       7      47 .. 0.83
   2 ?    1.5   0.2      0.42   5.7e+02       2      22 ..      78      97 ..      57     103 .. 0.67
   3 !    8.6   0.1    0.0023       3.1       6      27 ..     121     143 ..     120     148 .. 0.90
   4 ?    5.8   0.1     0.018        24       7      27 ..     163     183 ..     157     184 .. 0.88
   5 ?    1.8   0.0      0.33   4.6e+02       4      25 ..     201     222 ..     198     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
                HHHHHHHHHHHHHHHH- CS
       TPR_6 14 gdtdkAlealerlikeY 30
                ++ ++A +++++  +++
  CDO71628.1 30 TKFEEAGDLYQQAANQF 46
                57899999999998876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.42
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAlea 22
                A +++a++y++  d+  A++a
  CDO71628.1 78 AWWNAAKAYKRV-DPGLAVQA 97
                566666777666.55555555 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0023
                 HHHHHHH.HHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrk.lgdtdkAlealerli 27 
                 +++ y++ l+d +kA+e +er  
  CDO71628.1 121 IGQIYLQeLNDLRKACESFERAA 143
                 8999**989***********975 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerli 27 
                 a ++ +l ++ +A++++e++ 
  CDO71628.1 163 ADLHAELEEYPQAIALYEQVA 183
                 77889977***********96 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealer 25 
                 ++  l+ +++gd+ +A++ l +
  CDO71628.1 201 LRSSLCALAMGDAVTAKRNLTK 222
                 778899***9******998876 PP

>> TC1  Thyroid cancer protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   4.2e-05     0.058      28      71 ..      36      78 ..      13      81 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
         TC1 28 anIFed.vnldqlqrLFkksGDkkAeeRariifaesqdeeelarA 71
                ++++++  n+ ++ +LFk++GD++A e a     ++q+++e a+A
  CDO71628.1 36 GDLYQQaANQFKIDKLFKEAGDAHARE-AEC-REKCQENNEAANA 78
                55665526899***********99976.222.2355666666655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       4.2   5.8e+03      16      27 ..      31      42 ..      27      44 .. 0.77
   2 ?    0.4   0.1      0.73     1e+03       1      12 [.      76      87 ..      76      89 .. 0.86
   3 ?   14.0   0.1   3.3e-05     0.045       7      31 ..     121     146 ..     120     149 .. 0.92
   4 ?    3.4   0.4     0.081   1.1e+02       7      27 ..     162     182 ..     155     184 .. 0.88
   5 ?   -2.5   0.0       6.1   8.4e+03       3      20 ..     199     216 ..     198     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.2
                -HHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyeka 27
                ++eeA   y++a
  CDO71628.1 31 KFEEAGDLYQQA 42
                578888888877 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.73
                CCHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiyl 12
                a a++n +++y+
  CDO71628.1 76 ANAWWNAAKAYK 87
                679******997 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 3.3e-05
                 HHHHH.HHTT-HHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiy.lklgdyeeAkeyyekaleld 31 
                 +g+iy ++l+d+ +A e++e+a e+ 
  CDO71628.1 121 IGQIYlQELNDLRKACESFERAAEWY 146
                 89********************9986 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.081
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyeka 27 
                  ++++ +l++y +A++ ye++
  CDO71628.1 162 AADLHAELEEYPQAIALYEQV 182
                 47999**************97 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 6.1
                 HHHHHHHHHHHTT-HHHH CS
       TPR_8   3 ayynlgsiylklgdyeeA 20 
                 ++++ +++ l +gd   A
  CDO71628.1 199 YWLRSSLCALAMGDAVTA 216
                 677777777888886555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.33   4.6e+02       9      21 ..      31      43 ..      30      45 .. 0.87
   2 ?    4.8   0.1     0.016        22      24      40 ..      72      88 ..      69      90 .. 0.86
   3 ?   -0.1   0.1      0.54   7.5e+02       7      18 ..     136     147 ..     122     148 .. 0.64
   4 ?    6.7   0.2    0.0042       5.7       2      20 ..     164     182 ..     163     184 .. 0.86
   5 ?    0.1   0.0      0.48   6.6e+02      10      25 ..     254     269 ..     250     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.33
      TPR_11  9 kyeeAieaYkkAl 21
                k+eeA   Y++A 
  CDO71628.1 31 KFEEAGDLYQQAA 43
                789999*****96 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
      TPR_11 24 dPdnaeayynLGlayyk 40
                +++ a+a++n ++ay +
  CDO71628.1 72 NNEAANAWWNAAKAYKR 88
                6789***********86 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.54
      TPR_11   7 qGkyeeAieaYk 18 
                    +e A e+Y+
  CDO71628.1 136 CESFERAAEWYS 147
                 445666666666 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0042
      TPR_11   2 dayyeqGkyeeAieaYkkA 20 
                 d+  e+ +y++Ai+ Y++ 
  CDO71628.1 164 DLHAELEEYPQAIALYEQV 182
                 6778999*********996 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.48
      TPR_11  10 yeeAieaYkkAlkldP 25 
                 +++A+ ++ +  kld+
  CDO71628.1 254 FTGAVVEFDQVTKLDN 269
                 789***********96 PP

>> DUF4351  Domain of unknown function (DUF4351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.31   4.3e+02      19      46 ..     110     136 ..      95     144 .. 0.81
   2 ?    9.2   0.0   0.00088       1.2      29      58 ..     241     270 ..     234     270 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.31
     DUF4351  19 rfGelspeleeqIksLsleqLEdLgeal 46 
                 rf + ++  e++I +  l++L dL +a 
  CDO71628.1 110 RFRQAADR-EKEIGQIYLQELNDLRKAC 136
                 77777777.8999**********98876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00088
     DUF4351  29 eqIksLsleqLEdLgealLDFsslaDLenW 58 
                 + I++L++ +LE+   a+ +F ++  L nW
  CDO71628.1 241 ALIDALEAGDLEAFTGAVVEFDQVTKLDNW 270
                 5699************************** PP

>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.8      0.32   4.4e+02      11      46 ..      80     116 ..      45     149 .. 0.75
   2 ?    9.5   0.0   0.00083       1.1      17      53 ..     227     272 ..     217     281 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.32
                 HTGGG--SSS--HHHHHHHHHHHHHH.HTTSS-SEEE CS
   THDPS_N_2  11 errdelepetagaearaaveevleaL.daGelRvAek 46 
                  + ++  ++   + a +a+++++++L  aG+ R A +
  CDO71628.1  80 WNAAKAYKRVDPGLAVQALDHTISHLtKAGRFRQAAD 116
                 3333333333345667888888888834688888874 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00083
                 -SSS--HHHHHHHHHHHHHHHTTSS-SEE.........EETTEEEE CS
   THDPS_N_2  17 epetagaearaaveevleaLdaGelRvAe.........kkdgeWev 53 
                 +++ +++ + + v+++++aL+aG l + +          k ++W++
  CDO71628.1 227 DTTFTSTREAKFVNALIDALEAGDLEAFTgavvefdqvTKLDNWKT 272
                 444456788899************9887766665543313344554 PP

>> PerC  PerC transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6     0.071        98      38      70 ..      57      89 ..      27      98 .. 0.71
   2 ?    7.0   0.1     0.005       6.9       4      26 ..      99     121 ..      97     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.071
        PerC 38 lvalkRaeClrkasrpplpalnlseikkavdrt 70
                 +  + aeC +k +++++ a    + +ka +r+
  CDO71628.1 57 DAHAREAECREKCQENNEAANAWWNAAKAYKRV 89
                4567899**********9999888888887765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.005
        PerC   4 dkvaekLeakGlyRRaadRWaev 26 
                 d+   +L ++G +R aadR  e+
  CDO71628.1  99 DHTISHLTKAGRFRQAADREKEI 121
                 788899*************8877 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.096   1.3e+02      15      28 ..      30      43 ..      18      47 .. 0.82
   2 ?   -0.4   1.5       1.2   1.7e+03       5      24 ..      60      79 ..      56      88 .. 0.53
   3 ?   -3.2   0.0       9.3   1.3e+04      13      21 ..     107     115 ..     105     116 .. 0.77
   4 ?    8.2   0.1    0.0022         3      11      30 ..     126     145 ..     121     148 .. 0.87
   5 ?    8.5   1.0    0.0017       2.4       4      27 ..     159     182 ..     156     184 .. 0.88
   6 ?   -1.7   0.0       3.3   4.5e+03       2      24 ..     198     220 ..     198     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.096
       TPR_2 15 gdyeeAleafekAl 28
                 ++eeA +++++A 
  CDO71628.1 30 TKFEEAGDLYQQAA 43
                58999999999997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.2
       TPR_2  5 ynlGlayyklgdyeeAleaf 24
                 + +++ +k ++ +eA++a+
  CDO71628.1 60 AREAECREKCQENNEAANAW 79
                55555555555555555443 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 9.3
       TPR_2  13 klgdyeeAl 21 
                 k+g++ +A+
  CDO71628.1 107 KAGRFRQAA 115
                 789999986 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0022
       TPR_2  11 yyklgdyeeAleafekAlel 30 
                 + +l+d+ +A e fe+A e 
  CDO71628.1 126 LQELNDLRKACESFERAAEW 145
                 67899************986 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0017
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 +   ++++++l +y +A++++e++
  CDO71628.1 159 YKDAADLHAELEEYPQAIALYEQV 182
                 667899****************97 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3.3
       TPR_2   2 ealynlGlayyklgdyeeAleaf 24 
                 e++ +  l+++++gd   A++ +
  CDO71628.1 198 EYWLRSSLCALAMGDAVTAKRNL 220
                 57888889999999977776655 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.5       1.9   2.6e+03      46      58 ..      28      40 ..       3      67 .. 0.48
   2 ?   10.2   0.2   0.00082       1.1      13      57 ..     116     160 ..      96     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.9
                -CHHHCCTTEEEC CS
    Rotamase 46 dknsakngGdlgw 58
                 + + ++ Gdl +
  CDO71628.1 28 ASTKFEEAGDLYQ 40
                3333333333332 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00082
                 --HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEE CS
    Rotamase  13 keraeakakaeeileqlksgedtFeelArkySddknsakngGdlg 57 
                 + ++e+ +   + l++l++  ++Fe++A+ yS+++++a+ +  + 
  CDO71628.1 116 DREKEIGQIYLQELNDLRKACESFERAAEWYSQEDATATANACYK 160
                 45667777777888999999999**********999998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1787.45
//
Query:       CDO71629.1  [L=533]
Description: hypothetical protein BN946_scf184911.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-11   43.6   0.1    2.3e-07   30.6   0.0    2.8  3  PGM_PMM_I   Phosphoglucomutase/phosphomannomutase, alpha/beta
    3.5e-10   39.9   0.7    8.1e-10   38.7   0.3    1.8  2  PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal
     0.0036   17.9   0.1      0.018   15.7   0.1    2.3  1  PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.9e-11   2.3e-07      93     132 ..      62     101 ..      49     106 .. 0.84
   2 !    9.8   0.0    0.0001      0.63      61      93 ..     129     161 ..     124     163 .. 0.90
   3 ?   -3.0   0.0      0.94   5.6e+03      66      97 ..     324     360 ..     312     363 .. 0.56

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.9e-11
                 EEEEE--TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHC CS
   PGM_PMM_I  93 agimitaSHnppeyngiKvylsnGgpispeveekIeaiie 132
                  g+mitaSHnp  +ng+K+++++G  ++ + e++ ++ ++
  CDO71629.1  62 IGVMITASHNPEPDNGVKLVDPRGEMLEAAWETHATNLAN 101
                 69**********************9999888877777666 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0001
                 HHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECE CS
   PGM_PMM_I  61 aaglaanGvevillgllptPavsfairklkada 93 
                 + g+ a G+e+ ++g+++tP++++++++++ ++
  CDO71629.1 129 VDGFKAIGAEARNAGVTTTPVLHYLVKAINTKG 161
                 68999**********************998765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.94
                 CCT-CEEEEEEB-HHHHHHHHHHCC.....ECEEEEE CS
   PGM_PMM_I  66 anGvevillgllptPavsfairklk.....adagimi 97 
                 + G +++l + lp+  v   +++l+     +d g+++
  CDO71629.1 324 NGGSTKYLSERLPVKCVPTGVKHLHhaaehYDIGVYF 360
                 3344455555666666666666655444446666665 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.7     1e+04      12      33 ..     104     123 ..      97     135 .. 0.73
   2 !   38.7   0.3   1.4e-13   8.1e-10      21      70 ..     468     514 ..     441     517 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.7
                 ..EECCCCCTTHHCCCCCCCCG CS
  PGM_PMM_IV  12 vvaalaallkvasikeglkill 33 
                 +++a+ ++l++  + ++l+i+l
  CDO71629.1 104 TTDAFIDALDA--FVKILRIDL 123
                 57788888888..888888876 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 1.4e-13
                 TTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHHH CS
  PGM_PMM_IV  21 kvasikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeeva 70 
                 +    ++ l+ ++  Gr + vRpSGTe+++rvy+Ea+ ++++++la +va
  CDO71629.1 468 Q--AKIDELVRRYDGGRAF-VRPSGTEDVVRVYAEASVRSQADELAFRVA 514
                 2..367888999*******.*****************9999998887666 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     3e-06     0.018       3     101 ..     174     280 ..     172     282 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3e-06
                 HHHHGGGTS-.HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-...........EEEE.S-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEE CS
  PGM_PMM_II   3 Yiealkekvd.seaikksglkvvidplhGaggeilkellkelgv...........dvve.lnaepdpdfptkapnpeekealkllielvkkegadlgla 88 
                 Y+++l ++++   a k +   +v+d+++G+g+ + ++l ++lg            ++   ln ++ +df++++      + l    + v k g + +++
  CDO71629.1 174 YLRKLSTAFKkLVAGKPAIPPLVVDCANGVGAIVGEKLSEKLGDtlklilhntaiNTAGaLNNACGADFVKTS------QRLPPSLASVLKPGQR-ACS 265
                 8888888888444444554459*********************988887877776444447777777776533......3444555556666666.569 PP

                 E-TTS-BEEEE..ET CS
  PGM_PMM_II  89 fDgDaDRlgvv..de 101
                 +DgDaDRl+    d+
  CDO71629.1 266 LDGDADRLIYYylDD 280
                 9*******9765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3674.08
//
Query:       CDO71630.1  [L=331]
Description: hypothetical protein BN946_scf184911.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-16   57.9   0.0    1.9e-15   56.5   0.0    1.6  1  GATase_4  Glutamine amidotransferases class-II
      6e-07   29.7   0.0    1.1e-06   28.9   0.0    1.4  1  GATase_6  Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.1e-19   1.9e-15       3     248 ..      17     276 ..      15     285 .. 0.72

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.1e-19
    GATase_4   3 eLLgmssnvptdisfsftg.faarggltdahadGwGiafyegkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvRelwg 100
                 +LL+  ++ +++ +f+ +  + +r+       dG+G+++y+  + + +  +    +s   +    +++ s+   aH+R  t G+ +l+n+hp++     
  CDO71630.1  17 HLLTRPCHSIINQAFDSRLrLDHRRPI---NGDGFGVGWYDSVYDEELGSQPCIFTSVTPKKQYLMELASHH-SAHVRATTAGTLSLDNCHPWS----Y 107
                 555556666666666554314444444...68*********8888888777777777777755566677765.69*****************64....5 PP

    GATase_4 101 rewifAHnGdlke...ykpkl.....egrfePv.GsTDsElafCelleelasrfeka...epsaeeler...alaelake..iaelGvfnlllsdgral 182
                  + +f HnG + e   +k kl     ++ f+ v G+TDs +af  ll++l    + +   +  ++++ +    +++l++e  i+e   +n++++dg+++
  CDO71630.1 108 GKLMFMHNGGIAEfpkIKRKLqmalpDELFNMVtGNTDSQWAFALLLSKLPDPKARSftpAVLQKAMLDtiaHINALLEEhdITEPSLMNFCVTDGETV 206
                 689*******988333444558888888898877****************87654321112222333330114455544333778889*********** PP

    GATase_4 183 fa..hastrLvyilRkaPfgeaelkdedlevdfeev.ttkedrvavvatepLt.rdetWkklepGellvf 248
                 +a  + s+r       +  +  ++++ +   +++   t+k++++ ++a+epLt ++++W +++  +++v+
  CDO71630.1 207 VAtrYISSRTEEAASLWFSSGSTFSEYAPGGHYKMSkTDKRENIIMIASEPLTfEKADWMEIRTNHMVVI 276
                 *94445677777766666677888888888888765367788999********87889*****9999986 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.2e-10   1.1e-06      17      85 ..      87     158 ..      73     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.2e-10
    GATase_6  17 aHvRlaivglaeeega.qPfpsedgrlllvhNGeiynyk....elreelpalkglafrsrsDtevllall.eelG 85 
                 aHvR  + g+  +  + +P   ++g+l+++hNG i +++    +l+ +lp++    + +++D++  +all ++l+
  CDO71630.1  87 AHVRATTAGTL-SLDNcHPW--SYGKLMFMHNGGIAEFPkikrKLQMALPDELFNMVTGNTDSQWAFALLlSKLP 158
                 8***8888886.66666***..*****************66666777777744445778****999995536555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2300.93
//
Query:       CDO71631.1  [L=133]
Description: hypothetical protein BN946_scf184911.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-46  157.6   0.1    4.4e-46  157.4   0.1    1.0  1  DS           Deoxyhypusine synthase
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.024   14.8   0.0    1.1  1  Lectin_like  Lectin like domain


Domain annotation for each model (and alignments):
>> DS  Deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.1   4.9e-50   4.4e-46     174     287 ..      15     128 ..       8     129 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 4.9e-50
          DS 174 GdqlllfhsvkekkklkldivkDirelndialkakktgaiilGGGvpKhhilnanlmrngadyavyi...ttaqefdGslsgatldEavSwgkikaeak 269
                 G+ +l+++  k+++ l++di++Dir++n+++ k+kk+g+iilGGGv+Kh+i+na+l+rngady vyi   +t+qefdGs+sga++dEavSwgki+a+++
  CDO71631.1  15 GL-ILVAQ-SKNPG-LVVDICQDIRNINELSRKSKKAGMIILGGGVCKHQIANAMLIRNGADYSVYIqwqNTGQEFDGSDSGARPDEAVSWGKIQAGSE 110
                 55.44444.46777.************************************************************************************ PP

          DS 270 svkvyaDaTivlPLlvaa 287
                 svkv+aDaT+v+PLlva 
  CDO71631.1 111 SVKVFADATLVFPLLVAG 128
                 ****************96 PP

>> Lectin_like  Lectin like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.7e-06     0.024      26     108 ..       5      86 ..       1     107 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.7e-06
  Lectin_like  26 FtaeedekleavsfyttskdteyevyvykdfenekplsnklklaasgtlkyaGYytvdldkpvelkagkkfavvvkittpgsk 108
                  Ft  +   l +  ++++sk+    v +++d++n ++ls+k+k a    +   G    ++ +++ + +g +++v+++ +++g++
   CDO71631.1   5 FTIPAACMLVGLILVAQSKNPGLVVDICQDIRNINELSRKSKKA-GMIILGGGVCKHQIANAMLIRNGADYSVYIQWQNTGQE 86 
                  555666667777789999***********************999.56667788999**********************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1042.74
//
Query:       CDO71632.1  [L=477]
Description: hypothetical protein BN946_scf184911.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-17   63.6   0.0    1.2e-16   61.4   0.0    2.1  2  APH       Phosphotransferase enzyme family
     0.0018   17.3   0.0     0.0074   15.2   0.0    1.7  2  DUF1679   Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.028   14.0   0.0    1.6  1  RIO1      RIO1 family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   2.1e-20   1.2e-16      11     200 ..      63     287 ..      55     322 .. 0.77
   2 ?   -0.8   0.0      0.19   1.2e+03      78     118 ..     296     339 ..     285     389 .. 0.60

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 2.1e-20
                 CEEEEEEETT-.-EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHH CS
         APH  11 nrtylvttpag.ryvlrrnppa..raaeeirrevallrlLakagvpvPevlagd.tddeeigllfalieyvpgrsllr...klsaaqlpellealgefl 102
                 nr +l+t  +g r++ r++ p     +  +++eva +r+L+++g+pvP+v+++  t d+ + +++ ++e+v g+ l++   +l+ a+   ++++++++ 
  CDO71632.1  63 NRIFLITMRDGfRMIARIPYPVtvPKYYAVASEVATMRFLRAQGLPVPQVYDYSpTPDNAAKTEYIFMEFVTGTKLSNvwmELQGAEVASVVRQMVQLE 161
                 7778888888889999999999666666778**************************************************99**************** PP

                 CCHHCH.-STTTB-....................SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGG CS
         APH 103 aalhqvdpaalpla....................dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg....elptvllHgDlhpgN 177
                 a++ +++ +a +                      d++++ + ++r + +a +   +s l+  +  le  +++++a+ll +     l+ +  H D+ p N
  CDO71632.1 162 ARFMSIPFPAGGSLyyahdlqkaagkttgvpiplDDERFCIGPDRERREAYRYEEQSPLDH-IKNLE--LYRRIAPLLVPkkasLLAFCMRHPDFQPSN 257
                 *888887444444424444444444444444444333344444455555544444444444.44555..566666666666999*************** PP

                 EEEC.........TTEEEEE---TT-EEEE CS
         APH 178 llvd.......pddgrvtGviDfedaglgp 200
                 ++v        +d +r++ ++D++ a + p
  CDO71632.1 258 VMVSpspdstgSDRWRIVSLLDWQHAAILP 287
                 ***********9************997765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
                 --EE-SS..HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-SH CS
         APH  78 pgrsllr..klsaaqlpellealgeflaalhqvd.paalpladf 118
                 p+ ++++  +l++++ +e++++ ++ l ++h v  + +l   ++
  CDO71632.1 296 PPSPPENadELQESDYEEVYGRYHARLVHFHYVKsTMELNELHY 339
                 45555556678889999999999999999998843333333333 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-06    0.0074     127     191 ..     103     167 ..      93     180 .. 0.90
   2 ?   -0.8   0.0     0.089   5.3e+02     270     304 ..     248     286 ..     224     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
     DUF1679 127 nheeilltkvyflkkfdeenklkgyiimeyvedihtlsmyenikadelipvlkaiAtlqalslsl 191
                 +++ +++++vy +++  ++     yi me+v + +  ++   ++  e+++v++ + +l+a ++s+
  CDO71632.1 103 RAQGLPVPQVYDYSPTPDNAAKTEYIFMEFVTGTKLSNVWMELQGAEVASVVRQMVQLEARFMSI 167
                 35679*******************************************************99986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.089
     DUF1679 270 lvhgDlwsaNiLfsee....eegklklkkviDyQlvslg 304
                 + h D   +N++ s +    ++++  +  ++D+Q ++++
  CDO71632.1 248 MRHPDFQPSNVMVSPSpdstGSDRWRIVSLLDWQHAAIL 286
                 68999999****986511113446889999****98765 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.6e-06     0.028      55     109 ..      70     124 ..      46     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHHHCG.-HHHHHH CS
        RIO1  55 aekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaapklkdve.eeeeaee 109
                  +  fr++ r+    v vPk +++ ++v  m+f+ ++g+++p++ d++ + ++a++
  CDO71632.1  70 MRDGFRMIARIPYP-VTVPKYYAVASEVATMRFLRAQGLPVPQVYDYSpTPDNAAK 124
                 55567777777766.99******************************966444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3430.31
//
Query:       CDO71633.1  [L=221]
Description: hypothetical protein BN946_scf184911.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-07   29.6   0.1    8.7e-07   28.1   0.1    1.6  1  GATase_4  Glutamine amidotransferases class-II
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.24   11.6   0.0    1.4  1  GATase_6  Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   9.8e-11   8.7e-07     105     248 ..       2     166 ..       1     178 [. 0.72

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 9.8e-11
    GATase_4 105 fAHnGdlke...ykpkl.....egrfePv.GsTDsElafCelleelasrfeka...epsaeeler...alaelake..iaelGvfnlllsdgralfa.. 184
                 f HnG + e   +k kl     ++ f+ v G+TDs +af  ll++l    + +   +  ++++ +    +++l++e  i+e   +n++++dg++++a  
  CDO71633.1   2 FMHNGGIAEfpkIKRKLqmalpDELFNMVtGNTDSQWAFALLLSKLPDPKARSftpAVLQKAMLDtiaHINALLEEhdITEPSLMNFCVTDGETVVAtr 100
                 889999987333444447777878888777****************87654321112222333330114455544333778889************944 PP

    GATase_4 185 hastrLvyilRkaPfgeaelkdedlevdfeev.ttkedrvavvatepLt.rdetWkklepGellvf 248
                 + s+r       +  +  ++++ +   +++   t+k++++ ++a+epLt ++++W +++  +++v+
  CDO71633.1 101 YISSRTEEAASLWFSSGSTFSEYAPGGHYKMSkTDKRENIIMIASEPLTfEKADWMEIRTNHMVVI 166
                 45677777766666677888898888888765367788999********87889*****9999986 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05      0.24      43      85 ..       1      48 [.       1      80 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
    GATase_6 43 llvhNGeiynyk....elreelpalkglafrsrsDtevllall.eelG 85
                +++hNG i +++    +l+ +lp++    + +++D++  +all ++l+
  CDO71633.1  1 MFMHNGGIAEFPkikrKLQMALPDELFNMVTGNTDSQWAFALLlSKLP 48
                699*********66666777777744455778****999995546655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1702.97
//
Query:       CDO71634.1  [L=359]
Description: hypothetical protein BN946_scf184911.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-31  107.5  25.6    5.9e-17   61.9  13.8    2.9  2  ICE2      ICE2


Domain annotation for each model (and alignments):
>> ICE2  ICE2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9  13.8   3.3e-21   5.9e-17      57     221 ..      34     210 ..       4     213 .. 0.68
   2 !   49.1   3.8   2.4e-17   4.4e-13     272     405 ..     231     344 ..     218     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 3.3e-21
        ICE2  57 llasllyylqhlvipsLLilfLsrfsedaskveetllev..............kslseyl.....eklvvkpWkklLsnstpvftllEGfcslLvIQai 136
                   +++l ++  l++ sL++ +L  f     +++ ++++v              +            +++ + W  +L++s+p f ++EG+ slLv Q +
  CDO71634.1  34 SKSAFLLLSLLLFLHSLIHGTLVLFW---GSPALSIMQVpmhpflllvcfnafS-----EgvhpwLTMAASWWGEVLKWSSPGFIVMEGMSSLLVAQRL 124
                 22222223333333333333333332...2222222222444445544554332.....0334436778889*************************** PP

        ICE2 137 gqitrwlvnrkrsdswlilllvlsgsvitsalYfLyriyvfpeisvvdasllGvtltlvvflglyGivsgkGsviEsS...LlfaYiv 221
                 gq+ + lv +   + +++ +lv+++  ++++++++   y f + s ++++llGv+lt+ +fl+  G++ ++ +viEsS   L++aY v
  CDO71634.1 125 GQVGKKLVGEG--EGYQFGMLVAAAAAYVASAWWIVVSYPFAAASPLSSTLLGVALTTLIFLTFIGFALRRTNVIESSclaLIVAYNV 210
                 ********999..999*************************************************************94445566655 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 2.4e-17
        ICE2 272 lssslpsslkeileflkaaietitpsvlisLayRilvfYaatrIiPalresgaralsq.peledsekaskilkllylyspciliavYthLllqysgelk 369
                 ls+    +l ++ ++++  ++t++ +vl  L+yR++v++ a+rI+P++  ++ +  s   +  + +++sk+ +ll +y  +i ++vY hLll  ++   
  CDO71634.1 231 LSN----ILPHLQTLVNFVSNTLPKPVLFALVYRLVVMHFASRILPTIGADSWEGESGvDDGWEGRPTSKLTHLLLTYRQSIFVTVYSHLLLLDHS--- 322
                 444....44455566777789****************************99888777656667799************************985332... PP

        ICE2 370 kelklwglesivveswkfwnWvnifltlllYavELi 405
                              +    w+W+nif+tl++++vEL+
  CDO71634.1 323 --S----------QV--WWRWMNIFFTLAIWSVELL 344
                 ..2..........22..4****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2728.34
//
Query:       CDO71635.1  [L=194]
Description: hypothetical protein BN946_scf184911.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-37  127.3   1.6    2.7e-36  124.3   1.6    2.0  1  MoaE          MoaE protein
  ------ inclusion threshold ------
      0.017   14.9   0.2      0.052   13.3   0.2    1.8  1  RIF5_SNase_1  TbRIF5 SNase domain 1
      0.051   12.7   0.0      0.075   12.2   0.0    1.2  1  RmuC          RmuC family


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   1.6   4.6e-40   2.7e-36       1     112 [.      23     168 ..      23     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 4.6e-40
                 EESS---HHHHHHHH--TT--EEEEEEEE------...................TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCT............. CS
        MoaE   1 lteepldvaeiealvaspkaGAvvlFvGtvRdsfd...................gkkvteLeyeayepmaektleeiaeearerwe............. 67 
                 lt+epldv++i ++v+++ aGA+++F+Gt+R+sf+                   gk vt+L+y+ay++ma kt+++i+++a++r++             
  CDO71635.1  23 LTYEPLDVQSIIQSVTDDGAGATAVFIGTTRNSFRgeafeehiiiaqpttmlhaGKVVTRLDYQAYSKMAIKTMADILRDAHSRYSrsdhqtaqsdaqa 121
                 689*******************************888899999999999999999****************************9988999999999999 PP

                 ..TSEEEEEEE-EEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHHH CS
        MoaE  68 ..lervavvHrlGelevgeasvvvavssahRkeafeaceylidelKk 112
                   l r av+HrlG+++vge+s+v+avss+hRkeaf ace +++e+K 
  CDO71635.1 122 ssLIRSAVHHRLGTVPVGEPSIVIAVSSPHRKEAFMACELILEEVKM 168
                 99********************************************6 PP

>> RIF5_SNase_1  TbRIF5 SNase domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   8.7e-06     0.052      57     151 ..      71     182 ..      51     188 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.7e-06
  RIF5_SNase_1  57 slvrdasrvyLRqDy..ysnfPlegyGDvlfstelkldape......eleWasLqEtLl..rlGvarivRPivi.......RleaLldaEalaepvs 136
                   +++ +a++v+ R+Dy  ys++ +++  D+l  +++++ ++       + +  sL    +  rlG + +  P+++       R ea +++E + e v+
    CDO71635.1  71 TTMLHAGKVVTRLDYqaYSKMAIKTMADILRDAHSRYSRSDhqtaqsDAQASSLIRSAVhhRLGTVPVGEPSIViavssphRKEAFMACELILEEVK 167
                   45667999*******6668999********98888876554111111456667766555447888888888654344444499*******9999999 PP

  RIF5_SNase_1 137 ssasawledlsrker 151
                    +a  w ++  ++er
    CDO71635.1 168 MKAQIWKREFYENER 182
                   999999998877766 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05     0.075     186     250 ..      51     115 ..      43     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
        RmuC 186 eadpeLleealrkkVvlasPttLlalLrtvamlwrqeaqeknaeeiaellgelydkfekfgedle 250
                 ++++++  ea+++++++a Ptt+l + ++v  l  q+  +   +  a+ l++ ++++++  ++  
  CDO71635.1  51 TTRNSFRGEAFEEHIIIAQPTTMLHAGKVVTRLDYQAYSKMAIKTMADILRDAHSRYSRSDHQTA 115
                 56788889****************99999998888888888888888888888888777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1443.35
//
Query:       CDO71636.1  [L=810]
Description: hypothetical protein BN946_scf184911.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.1e-127  423.0   0.1   9.9e-127  422.3   0.1    1.4  1  Indigoidine_A  Indigoidine synthase A like protein
    2.8e-21   76.1   0.8    4.4e-11   42.6   0.1    2.5  3  PfkB           pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Indigoidine_A  Indigoidine synthase A like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.3   0.1  1.1e-130  9.9e-127       1     291 []      43     338 ..      43     338 .. 0.98

  Alignments for each domain:
  == domain 1  score: 422.3 bits;  conditional E-value: 1.1e-130
                    .EEE---TTS-EEEE-SHHHHTSS-HHHHHHHHHHHHHHHHHHT-EEEEEEEETTEEEES--HHHHHHHHHH-......EE-GGGHHHHHHHT--E CS
  Indigoidine_A   1 eVkealaegkpvVALEstiithGlpypenlelaleveaivreegavPAtiaildGkikvGlseeelerlakka..kkvaKvsrrdlalvlakkldg 94 
                    eV+eala+g+pvVALE+tiithG+pyp nle+a++ve+ vr+ ga+PAti++++G++k+Gl+ +elerla+ +  ++v+K+srrd++ ++a k+dg
     CDO71636.1  43 EVQEALAHGQPVVALETTIITHGMPYPANLETARSVESNVRKVGAIPATIGLIEGRVKIGLEPHELERLADVRknTSVVKLSRRDIGPAIALKRDG 138
                    8*********************************************************************95544889****************** PP

                    EE-HHHHHHHHHHTT--EEE-S-B--B-TT...SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES.-SB--BTTBS--S-B CS
  Indigoidine_A  95 atTvaatmilAalagIkvfatggiGGVhrgaeesmDvSaDLteLartpvavvcaGvksiLdiprtleyLetqgvpvvtyk.tdefpaFytresgvk 189
                    +tT++at+i++alagIkvf+tgg+GGVhrgae++mD+SaDL+eL+r+pv +v+aGvksiLdi+rtleyLet gvpvv+y+ td+fpaFy+r+sg+k
     CDO71636.1 139 GTTCSATLIFSALAGIKVFSTGGLGGVHRGAETTMDISADLHELTRCPVGLVSAGVKSILDIGRTLEYLETLGVPVVSYGpTDDFPAFYSRHSGFK 234
                    ************************************************************************************************ PP

                    --.EE-SHHHHHHHHHHHHHTT--SEEEEE----GGG---HHHHHHHHHT------.......GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH CS
  Indigoidine_A 190 vplrvesaeeaAkllkakeelglksgvlvavPipeeaaldkeeiekaieealeeaeekgik..GkevTpfllkrikeltkgksleanialvknnar 283
                    +p+r+e++ +aA++l+a++++gl++g+l+avPipe++++ ++e+++a+e+a+ e+e++g++  Gke+Tp+ll+r+ elt gksl++nial++n+a 
     CDO71636.1 235 SPWRIEDPVSAARILHAQKQFGLSNGALFAVPIPEAYEAVGQELQRAVEQAVLESEANGMSrrGKEATPWLLRRVGELTAGKSLASNIALIENTAL 330
                    ************************************************************888********************************* PP

                    HHHHHHHH CS
  Indigoidine_A 284 vaakiAve 291
                    v+++iAv+
     CDO71636.1 331 VGGQIAVA 338
                    ******85 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   4.9e-15   4.4e-11       3     158 ..     375     542 ..     373     560 .. 0.81
   2 ?   -4.2   0.0      0.92   8.3e+03     184     201 ..     597     614 ..     590     619 .. 0.85
   3 !   31.5   0.1   1.2e-11   1.1e-07     224     297 ..     722     801 ..     685     806 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.9e-15
                 EEEEEEEEEEEEEEECSSH......TTSEE..EESEEEEEEESHHHHHHHHHHHTT........-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEE CS
        PfkB   3 kvvviGealidliavsekl......egelv..evktveksaGGagaNvAvalarlg........advafigavGdDnfGeflleelkkegvdtdyvkid 85 
                 k+v++G+a +d+ a  + +        +l+    + v  +aGG+g+NvA a++r            +a+i+ +G D fG+ l +e ++ g++td+++ +
  CDO71636.1 375 KLVIVGSAAVDITARADPIagavraNSNLHttAPGVVALTAGGVGRNVAEAAHRILtsyssdfsTATALISPIGEDAFGQLLVSETQQVGLRTDGLISV 473
                 789999999999999988888887755555525566789*************************99********************************* PP

                 SSSEEEEEEEEETTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHT CS
        PfkB  86 edtrtglalivvdedgertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaakng 158
                 +++rt+++  v+d++g   +v    ++  +++ e  ++ d+le+     ++  +++++++++l+ l+  ak+ 
  CDO71636.1 474 PKARTAVCNMVLDSAG--GLVGGVADMDVIRTLEASKVTDILEKHRPSILA--MDANMSHETLKSLFMYAKER 542
                 *************984..566666666666665555667777776666666..46677777777777666665 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.92
                 ESEEEEEHHHHHHHHTSC CS
        PfkB 184 adllkpneeElealtgek 201
                 +++++pn  El+++ +e+
  CDO71636.1 597 VTFATPNLLELAHMYQEA 614
                 8999********998875 PP

  == domain 3  score: 31.5 bits;  conditional E-value: 1.2e-11
                 EEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHT.......THHHHHHHHHHHHHHHHHHTSSSSST CS
        PfkB 224 vvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaalle.......gksleealrfanavAalvvqkkgaia 297
                 vv ++  G  vv   ++++  +vp++k+v++tGAGDs vg++la+l+e        + l + ++ a+ +A  ++q++ a +
  CDO71636.1 722 VVARSPSGRSVV-VLKHFPPIPVPEEKIVNVTGAGDSLVGSMLASLTEdpaafeePAALDRLVAQAQLAAVYTLQSEHAVS 801
                 455555555555.4566778888******************************99999**************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6080.92
//
Query:       CDO71637.1  [L=544]
Description: hypothetical protein BN946_scf184911.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   51.5   0.0    2.9e-13   50.1   0.0    1.8  1  Helicase_C     Helicase conserved C-terminal domain
    7.8e-05   22.7   0.1      0.001   19.1   0.0    2.2  2  ResIII         Type III restriction enzyme, res subunit
     0.0086   15.9   0.0      0.021   14.6   0.0    1.6  1  DEAD           DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.043   13.0   0.3      0.098   11.9   0.0    1.6  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
        0.7   10.3   9.3        1.3    9.4   9.3    1.3  1  Cgr1           Cgr1 family


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   8.1e-17   2.9e-13      33     110 ..     162     242 ..     135     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 8.1e-17
                 HHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  33 klllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                   l+  +   g+ + +lh+++p+ er++ +e+f++g++ vLi   v+ +G dip++++V+   + r+   + q+iGR +R 
  CDO71637.1 162 AKLTAAFraaGVDARYLHANTPAAERKALVEAFRAGRFPVLINCAVLTEGADIPNIDCVMVARPTRSRNIFAQMIGRGMRL 242
                 33323334469******************************************************************9995 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.9e-07     0.001     135     170 ..       3      54 ..       1      55 [. 0.88
   2 ?    1.3   0.0     0.083     3e+02      69     128 ..     443     511 ..     436     534 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.9e-07
                 EEEEETGGGTTS.TTTHHHHHT---.................SEEEEEESS-S CS
      ResIII 135 viiiDEaHrlgakkswreilekfke.................avllglTATpe 170
                  +iiDEaH+++a  s+r+il +f +                   +lg++AT+ 
  CDO71637.1   3 ALIIDEAHHAAA-PSYRRILSHFHPdiknpdgdfeppklkhrVPVLGFSATFS 54 
                 68**********.**********887888899999999988888999999986 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.083
                 HHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH......................HH CS
      ResIII  69 qtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee..............eeeseel 128
                  ++ +++  +++++++i+k ++ +k      ++ ++k lv+t++ l++ ++ e              +   +e+
  CDO71637.1 443 GAKWRWEPATDSQKQFIMKRWKARKVPT--AADGQSKALVATEDGLQNLKKGEaaniitrlkhgaqsR---HEK 511
                 5566677777888888999999999988..88899999999999999999777888888777775432...222 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.7e-06     0.021     123     170 ..       2      54 ..       1      58 [. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.7e-06
                 EEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TT..SE..EEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx..xx..xxxxxxxxx RF
        DEAD 123 rflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lq..rq..vivlSATlp 170
                 + l++DEa+     ++++ +++ +  +++   d +  +  ++  v+ +SAT++
  CDO71637.1   2 KALIIDEAHHAAAPSYRRILSHFHPDIKNPDGDFEpPKlkHRvpVLGFSATFS 54 
                 679************************98888776444432267*******98 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.7e-05     0.098      77     154 ..     170     245 ..     160     256 .. 0.86
   2 ?   -2.6   0.2      0.72   2.6e+03     188     222 ..     491     525 ..     481     536 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
  ERCC3_RAD25_C  77 akklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkk 154
                    a  +  +y++ +t+ aer++++++f++  ++ +++   v  +  D+P+  +++ ++  + sr   aq +Gr +r   +
     CDO71637.1 170 AAGVDARYLHANTPAAERKALVEAFRAG-RFPVLINCAVLTEGADIPNIDCVM-VARPTRSRNIFAQMIGRGMRLSPE 245
                    5567889*******************97.678888888889999*******87.888999***********9997655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.72
  ERCC3_RAD25_C 188 qGYafkviteleeleeeeelaystkeeqkellqkv 222
                    +G a ++it+l++  ++++ + ++++e+  l+ + 
     CDO71637.1 491 KGEAANIITRLKHGAQSRHEKRRKEQERAALVVEK 525
                    56666777777766665555555555555554433 PP

>> Cgr1  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   9.3   0.00036       1.3      19     101 ..     453     535 ..     441     541 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
        Cgr1  19 rsksskkkkkkkkswekrqekrkkakaiKkl...ekeLkdekeaerqrrieaikerrkakeEkeRleelaakm.hakkveRlkrrek 101
                  s+++       k+w++r+  ++++ + K+l   e  L++ k+ e  + i+++k   + + Ek+R+e+ +a +  +k ++R+ r e 
  CDO71637.1 453 DSQKQ----FIMKRWKARKVPTAADGQSKALvatEDGLQNLKKGEAANIITRLKHGAQSRHEKRRKEQERAALvVEKEAKRRAREEV 535
                 33333....45789****9887776666654222889******************************99999867777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3552.76
//
Query:       CDO71638.1  [L=312]
Description: hypothetical protein BN946_scf184911.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-66  219.6   5.8    2.1e-23   82.1   0.0    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.1e-27   2.1e-23       3      94 ..      11     106 ..       9     109 .. 0.93
   2 !   81.5   0.2   1.7e-27   3.1e-23       2      92 ..     114     207 ..     113     210 .. 0.93
   3 !   57.7   0.6   4.7e-20   8.5e-16       4      95 ..     216     304 ..     214     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.1e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++++ ++++Gg+++ava++ ++P++++K  +q+q ++ k+ + ++    i+d++ ++y++eGl++l+rG+++n++r++p++al+f++ +++k l+ 
  CDO71638.1  11 KEFFVDFMMGGVSAAVAKTSAAPIERIKLLIQNQDEMIKQGRLSEpykgIVDCFARTYRDEGLLSLWRGNTANVIRYFPTQALNFAFKDYFKSLFG 106
                 67999*****************************999777666667888********************************************996 PP

  == domain 2  score: 81.5 bits;  conditional E-value: 1.7e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 +++++ ++++G+ aga++ l+++ ld+++trl +++ks+k+ + ++   ++dv+kk++ ++G+ glyrG++p++++++++++l+f++y++lk +
  CDO71638.1 114 WKWFAGNVASGAGAGAASLLFVYSLDYARTRLANDAKSAKAGGTRQfngLIDVYKKTLASDGIVGLYRGFVPSVVGIIVYRGLYFGVYDSLKPV 207
                 78999*****************************999988776666777******************************************976 PP

  == domain 3  score: 57.7 bits;  conditional E-value: 4.7e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 s+l++++ G+   ++a+l+ +Pld+++ r+++ ++ + + ks  ++d+ ++i+ +eG+++l++G+++n+lr +   a  ++ly++++++++ 
  CDO71638.1 216 SFLASFMLGWGVTIGAGLASYPLDTIRRRMMMTSGAGVHYKS--MFDAGSQIIAKEGVKSLFKGAGANILRGVA-GAGVLSLYDKFQEVMFG 304
                 7899******************************99887555..*****************************5.5555679****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2032.38
//
Query:       CDO71639.1  [L=227]
Description: hypothetical protein BN946_scf184911.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-18   66.2   0.4    1.2e-17   64.7   0.4    1.9  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.4   6.4e-22   1.2e-17       2      67 ..      34      98 ..      33     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 6.4e-22
                SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.TSCEEEEECEBSS-BETTTEEEEEET CS
          CS  2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki.gkeklliegeLfgpIdpeesswties 67
                 y+W+Q l +V+vt++v+k +++++d++v +k+++l+v++ g ++++++geL+++I++ees+wt+ +
  CDO71639.1 34 PYTWTQQLVDVDVTVPVPK-GTRARDLNVVIKKKHLTVGLkG-KEPILDGELCKEIKVEESTWTLGK 98
                69*****************.********************55.59999****************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1715.54
//
Query:       CDO71640.1  [L=131]
Description: hypothetical protein BN946_scf184911.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00041   20.3   0.2        4.7    7.3   0.0    3.2  3  DUF2187     Uncharacterized protein conserved in bacteria (DU
     0.0051   16.6   0.1       0.14   12.0   0.0    2.5  2  DUF4720     Domain of unknown function (DUF4720)


Domain annotation for each model (and alignments):
>> DUF2187  Uncharacterized protein conserved in bacteria (DUF2187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00052       4.7       3      16 ..      62      75 ..      60      86 .. 0.82
   2 !    6.2   0.0    0.0011       9.9       4      15 ..      91     102 ..      88     110 .. 0.82
   3 !    3.4   0.0    0.0083        74       4      14 ..     119     129 ..     116     131 .] 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00052
     DUF2187  3 AkvGdiieFkkgdl 16
                 + Gd++eFk++  
  CDO71640.1 62 SNNGDVVEFKNHHK 75
                578********965 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0011
     DUF2187   4 kvGdiieFkkgd 15 
                   Gd++eFk++ 
  CDO71640.1  91 SNGDVVEFKNHH 102
                 57********95 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0083
     DUF2187   4 kvGdiieFkkg 14 
                 + Gd++eF ++
  CDO71640.1 119 RNGDVVEFSNN 129
                 68******998 PP

>> DUF4720  Domain of unknown function (DUF4720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.6e-05      0.14       7      72 ..      11      70 ..       5      77 .. 0.68
   2 ?    2.1   0.0      0.02   1.8e+02      49      70 ..     103     124 ..      97     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
     DUF4720  7 valvllgqvkgaplrkeekWkslenPrnrdlffrtlqayflrrGldlekfpaafsiknedprPllf 72
                va+v +gqv ++p+  + +    +  r     f t+qay   r ld++++pa+f++ +++   + f
  CDO71640.1 11 VAVVFVGQVAASPMPMPLRR---QVERREPSSFETIQAY---RRLDINTVPAEFPTMSNNGDVVEF 70
                56666666666666554332...22333345699*****...88***********87777666555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.02
     DUF4720  49 rGldlekfpaafsiknedprPl 70 
                 + +d++++pa+f++ + +   +
  CDO71640.1 103 KRVDINTIPAEFPTMSRNGDVV 124
                 569**********877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 994.60
//
Query:       CDO71641.1  [L=713]
Description: hypothetical protein BN946_scf184911.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-13   48.1  15.5    3.8e-12   45.8   0.9    3.8  3  NUC153     NUC153 domain


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.9    0.0017        31       1      13 [.       3      15 ..       3      17 .. 0.94
   2 !    6.1   1.0   0.00053       9.5       1      11 [.      28      38 ..      28      38 .. 0.93
   3 !   45.8   0.9   2.1e-16   3.8e-12       1      28 [.     624     651 ..     624     652 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0017
      NUC153  1 DpRFkalFedhdF 13
                DpRF++l +d+ F
  CDO71641.1  3 DPRFARLKTDPRF 15
                9******999998 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.00053
      NUC153  1 DpRFkalFedh 11
                D+RFk++F+d+
  CDO71641.1 28 DERFKEIFDDK 38
                9*******995 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 2.1e-16
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpm 28 
                 D+RF+a+ edh FaIDp++p+Fkkt+ m
  CDO71641.1 624 DERFQAVLEDHTFAIDPSNPHFKKTKNM 651
                 9*************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2146  (0.119694); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.43
# Mc/sec: 5010.60
//
Query:       CDO71642.1  [L=232]
Description: hypothetical protein BN946_scf184911.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1834.90
//
Query:       CDO71643.1  [L=170]
Description: hypothetical protein BN946_scf184911.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-06   26.3  10.1    1.4e-05   25.4  10.0    1.5  1  Tim17     Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  10.0   7.8e-10   1.4e-05      15     106 ..      35     123 ..      16     129 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7.8e-10
       Tim17  15 lGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGall..rag.pqaaavgaig 106
                 + +v +lv+++ +a         +++g + +++r+  + + f+++g+ ++++e+++ + R+ +d++n++a+++++G l   ra+ +  a++++++
  CDO71643.1  35 AAGVGALVSAVQNAL------GTHSSGAAGIFTRTGGTIGFFAAMGATFALTESIVANQRQVDDPLNGAAGACAAGFLAgiRARsLPMAIGACAV 123
                 334444444443333......4678888889888888889************************************9975554423333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1199.03
//
Query:       CDO71644.1  [L=984]
Description: hypothetical protein BN946_scf184911.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-27   97.1   0.5      1e-27   97.1   0.5    1.9  1  Ribosomal_S9    Ribosomal protein S9/S16
    3.5e-20   72.2   0.0    7.8e-16   58.3   0.0    2.5  2  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
    1.2e-05   25.6   0.0    4.1e-05   23.9   0.0    1.9  2  BRCT            BRCA1 C Terminus (BRCT) domain
     0.0032   15.9   5.2     0.0046   15.3   5.2    1.2  1  CDC45           CDC45-like protein
  ------ inclusion threshold ------
      0.038   12.2  10.1      0.058   11.6  10.1    1.1  1  Nop14           Nop14-like family
       0.23   11.6   9.3       0.49   10.5   7.4    2.1  2  DUF2052         Coiled-coil domain containing protein (DUF205
        1.1    8.6  18.3       0.41   10.0  14.5    1.9  2  Nop53           Nop53 (60S ribosomal biogenesis)
        2.2    6.3   3.5        3.5    5.6   3.5    1.2  1  Hid1            High-temperature-induced dauer-formation prot
        2.8    6.7  10.8      0.018   13.9   2.1    1.7  2  Apt1            Golgi-body localisation protein domain
        3.1    6.3  19.8        5.1    5.6  19.8    1.2  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su
        3.5    6.4  12.7         40    2.9   0.0    2.3  2  SWIRM-assoc_2   SWIRM-associated domain at the N-terminal
        7.9    5.7   7.7         16    4.7   7.7    1.4  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.5   6.8e-31     1e-27       1     119 [.      12     142 ..      12     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 6.8e-31
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSS..SEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH.........HHH CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllg..kfdvfvkvkgGGlsgqaeAirlgiaraLvalek.........eek 86 
                   G++K+++A ++ keg+g i +ng ++   ++ e  r kv+ep+ ++g+    ++d++++vkgGG+++q++Air++ia+a+va++          e k
    CDO71644.1  12 GKKKTATAVAHAKEGRGLIHINGSPITL-LRPEILRFKVYEPVLVAGEDAfsAIDIRLRVKGGGHTSQVYAIRQAIAKAVVAYYAkyfdaasalELK 107
                   89**************************.877**************9876768******************************97777665554445 PP

                   HHHC..TCCCTS-B--------TTSSCTTB----S CS
  Ribosomal_S9  87 keLk..kaglltrDpRvvErkKtgkkkARkkyqws 119
                   k+L   +++ll +DpR+ E+kK+g ++AR++ q+s
    CDO71644.1 108 KKLVayDRTLLIADPRRAEPKKFGGHGARARRQKS 142
                   6665789*************************987 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0002       0.3       6      79 ..     161     239 ..     151     244 .. 0.83
   2 !   58.3   0.0   5.2e-19   7.8e-16       2      84 ..     534     625 ..     533     626 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      BRCT_2   6 eglrFYindaepspsreklkklIeknGGevvetitsavyiviaesneee......laekrkrrvvspkyIkdCikkgkll 79 
                 ++lr ++ +a   + r ++ +  ++nG ++ +++++a +i++ +++ +         +++++ v+++ +++ ++++ k l
  CDO71644.1 161 HPLRVFV-EAAELEYRPTVIRTLKNNGAQIRHSPQEASVIIVDPETPSGaqftqdWGSEPGKVVLDVAWVQKSVERRKAL 239
                 6777788.444447888999999************999999999998889**9988899***************998865 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 5.2e-19
      BRCT_2   2 sklF.....eglrFYindaepspsreklkklIeknGGevvetitsavyiviaesneee......laekrkrrvvspkyIkdCikkgkllpleny 84 
                 ++lF     e+++F++  +++   r k+++ I+knGG++v +i +a+y+++ + ++ +      +a + ++++v+p+++++C++++++++l+++
  CDO71644.1 534 KQLFtkqdgEPCKFFV--QIDIRPRTKIADAIKKNGGRLVPDIADADYVILGAPSTRTfeerlkQAISYDKQAVRPQWVFECVEQNTIVDLDDF 625
                 789999999*******..67779**************************9999999999********************************987 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.2   9.2e+03      25      52 ..     178     203 ..     173     217 .. 0.63
   2 !   23.9   0.0   2.7e-08   4.1e-05       9      79 .]     545     614 ..     543     614 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
                 HHHHHHHTTCEEESSCSTTSSEEEESSS CS
        BRCT  25 leelikehGGkvttevskktthlvvgep 52 
                   +++k++G+ + ++  +    +++ +p
  CDO71644.1 178 VIRTLKNNGAQIRHSPQEA--SVIIVDP 203
                 5678999999995554444..4444444 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.7e-08
                 EEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHH..HHHHHHTTSEEEETHHHHHHH CS
        BRCT   9 ckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslk..ylealklnipivheewlldci 79 
                 ckf++  + d  +r+++ + ik++GG++++++ + +  ++ g p +r+ +  +++a++  +  v+++w+++c+
  CDO71644.1 545 CKFFV--QIDIRPRTKIADAIKKNGGRLVPDIADADYVIL-GAPSTRTFEerLKQAISYDKQAVRPQWVFECV 614
                 99999..************************998876666.55524444444********************5 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.2   3.1e-06    0.0046     133     198 ..     674     735 ..     654     868 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.1e-06
       CDC45 133 deedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsa 198
                 d+    +++e+d++eeeeeeeee  + + +++++ k k+k+k  ++++ +++++++++++r  +s+
  CDO71644.1 674 DD----DDDESDEEEEEEEEEEEGASGSPKTKSQVKAKEKAKGTTNKAPKTKNKKKAEKSRAAASQ 735
                 11....111111111111111111222222222222222222222222222222222222222111 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.1   3.9e-05     0.058     357     436 ..     667     735 ..     621     759 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
       Nop14 357 edddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeel..leeekkaaeekkekkkkkkkse 436
                 +d+d v +++++     e+deeeee+eeeee ++ + +++s+ +++e+ +    ++++  ++++kka++++      +++s+
  CDO71644.1 667 QDEDYVMDDDDD-----ESDEEEEEEEEEEEGASGSPKTKSQVKAKEKAKGT--TNKApkTKNKKKAEKSR------AAASQ 735
                 333333333332.....22222222222222222222222222222111111..11222111111111111......11111 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   7.4   0.00033      0.49      84     144 ..     679     736 ..     632     755 .. 0.51
   2 ?    0.2   0.0      0.46   6.9e+02      52      94 ..     831     873 ..     822     940 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
     DUF2052  84 eeeeeeeeeeeeeeeeeeeeedekekaeadeedeeeeeekeekeeeeekeeeaeaevlsee 144
                 e  +eeeeeeeeeee  ++++++k++ +a+e+ +   ++++  +++++k++e+ +++ s++
  CDO71644.1 679 E-SDEEEEEEEEEEEGASGSPKTKSQVKAKEKAK--GTTNKAPKTKNKKKAEKSRAAASQN 736
                 1.11111111112223333233322222222111..1111222222222222222222222 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.46
     DUF2052  52 skeeslseiLlrreeeaaaaerleaqqeeleeeeeeeeeeeee 94 
                 ++ +s+s+++ +   ++++++ +++ q +++++    +e +++
  CDO71644.1 831 HTPKSWSTFISHATRREKVEKMRRQAQIARRKASASGQETSQR 873
                 4568899999999999998888877777753333333333333 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  14.5   0.00028      0.41     242     312 ..     675     736 ..     660     746 .. 0.52
   2 ?   -0.6   0.1      0.45   6.7e+02     195     231 ..     834     870 ..     832     883 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00028
       Nop53 242 ekdegleeeeeeeeeeeeeeeeeeeeseeeeklnapvkkkpkrKTkaqRnkekrrkeeekeekeekkekkk 312
                 ++d  +e++eeee    eeeeeee+ s+   + +++ ++k+k K k   nk+ + k+++k+ek ++++ + 
  CDO71644.1 675 DDD--DESDEEEE----EEEEEEEGASG---SPKTKSQVKAKEKAKGTTNKAPKTKNKKKAEKSRAAASQN 736
                 111..11222221....11222222222...2333345556777777777777777777777777766554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
       Nop53 195 edhqellqkaveaEkkrekeeeklerkrekiaekaat 231
                 +++++ ++ a  +Ek  + +++++ ++r++ a+ ++t
  CDO71644.1 834 KSWSTFISHATRREKVEKMRRQAQIARRKASASGQET 870
                 5677777777777776444444444333333333443 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.5    0.0024       3.5     634     695 ..     679     740 ..     624     770 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0024
        Hid1 634 tddeskaereksatessssqavs.......qlremsekarakesaesteesrqesatskkspsgmsqsa 695
                 ++de+++e+e++++ +s s+ ++       +++++++ka++++++++ e+sr+++++++        s+
  CDO71644.1 679 ESDEEEEEEEEEEEGASGSPKTKsqvkakeKAKGTTNKAPKTKNKKKAEKSRAAASQNEG-------SS 740
                 111111111111111111111111222222333333333333333222222222222222.......21 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.7       2.1   3.2e+03     364     392 ..     458     486 ..     405     543 .. 0.41
   2 ?   13.9   2.1   1.2e-05     0.018     284     398 ..     615     776 ..     613     861 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.1
        Apt1 364 ssssessssssskkrsseesslessaser 392
                 s ++ ++s ss++k+ s ++ l+ss+ + 
  CDO71644.1 458 SPMEGLRSPSSKRKSASVDRPLSSSSARY 486
                 11111111111111111111111111111 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.2e-05
        Apt1 284 eeevgkklfeYiFPkrdsdaqea.......................smvkess...........seeddesdeesessssss...ssssssasssssss 345
                 e+ +   l ++ F +++ +++++                       s     +           +++ddesdee+e++++++   s    s +++s+ +
  CDO71644.1 615 EQNTIVDLDDFAFEGMKVEKKRGrpgatgkrlivtgpgapkpnagkS-----DgfflqdedyvmDDDDDESDEEEEEEEEEEegaS---GSPKTKSQVK 705
                 56667777788888888877777777777777666665554444331.....0233333334555555555555554444332322...2222222222 PP

        Apt1 346 srssslelrlkptsstssssssessssssskkrsseesslessaservkssr.......................a 398
                  +++++  ++k   +t+++++ e+s+ + s+++ s++  +++++ ++    +                       +
  CDO71644.1 706 AKEKAKGTTNK-APKTKNKKKAEKSRAAASQNEGSSRGPVQQRTASS----KafwrpspppptrvvehyrgknlyT 776
                 22222221211.12222222222222222222222222222222222....1223333344444444455555551 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  19.8    0.0034       5.1     281     356 ..     667     740 ..     657     751 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0034
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX CS
  TFIIF_alpha 281 rEldyisDdsasendpeeredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdkkdSd 356
                  +++dy+ Dd+++e+d+ee+e+ ++eEe++ +  + + + ++ke+ k    +k  k k k+k +k++++ ++++ S+
   CDO71644.1 667 QDEDYVMDDDDDESDEEEEEE-EEEEEGASGSPKTKSQVKAKEKAKGTT-NKAPKTKNKKKAEKSRAAASQNEGSS 740
                  7899*9999999999999888.777888888877777777777766433.35555555555555555555445443 PP

>> SWIRM-assoc_2  SWIRM-associated domain at the N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.027        40     144     198 ..     550     604 ..     544     612 .. 0.88
   2 ?    0.8  12.6      0.11   1.7e+02     250     359 ..     667     779 ..     664     785 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
  SWIRM-assoc_2 144 dvdkklasklkdiikrhqgtitedeeeatHivypvvadpeeeeylRpvmkrdkqv 198
                    ++d +  +k+ d ik+  g ++ d ++a  ++  ++++++ ee l+  +  dkq 
     CDO71644.1 550 QIDIRPRTKIADAIKKNGGRLVPDIADADYVILGAPSTRTFEERLKQAISYDKQA 604
                    56777789*****************************999999998888888875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
  SWIRM-assoc_2 250 nEedYevdeegkkkvhkkrlsvedlvssseedkkkkksakskkrkrsPsPpskkeskkksgrkga.asarrkkkkeeeeeeedltkdmedptpepn 344
                    ++edY +d+++ +  ++++ + e++   s + k+k++  +++k k + + ++k+++kkk+++++a as++++ ++   ++    +k +  p+p p 
     CDO71644.1 667 QDEDYVMDDDDDESDEEEEEEEEEEEGASGSPKTKSQVKAKEKAKGTTNKAPKTKNKKKAEKSRAaASQNEGSSRGPVQQRTASSKAFWRPSPPPP 762
                    789**9998877766666555554444444333333334566777777777777789999998875666667777777888888899877776665 PP

  SWIRM-assoc_2 345 ieeve..lpksvnskkd 359
                     + ve    k+  +k+d
     CDO71644.1 763 TRVVEhyRGKNLYTKED 779
                    55444004445455555 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.7      0.01        16     269     293 ..     668     692 ..     649     708 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.01
       NOA36 269 eddegdedddddddeedddeeedde 293
                 ++d+  +dddd++dee+++eee++e
  CDO71644.1 668 DEDYVMDDDDDESDEEEEEEEEEEE 692
                 2333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1534  (0.0855597); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                       185  (0.0103185); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.50
# Mc/sec: 5877.01
//
Query:       CDO71645.1  [L=220]
Description: hypothetical protein BN946_scf184911.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-64  216.7   0.0    2.4e-64  216.6   0.0    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family
  ------ inclusion threshold ------
      0.074   12.8   0.0       0.14   11.8   0.0    1.5  1  DUF697        Domain of unknown function (DUF697)


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   0.0   2.7e-68   2.4e-64       1     191 [.      18     206 ..      18     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 2.7e-68
                   EEE-HHHHSS---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHH CS
  Ribosomal_L4   1 veLspkvFaapirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrs 97 
                   veL+p+vF+ pirrd++h +vv yl+ +rqg+astk+r+ev+gsgrk+++QKG+GrAR+g+++sp++rgGgva+gpkp rd++tkln+Kv ++++r+
    CDO71645.1  18 VELDPHVFDHPIRRDILHLCVVHYLDCQRQGSASTKTRGEVRGSGRKIRPQKGSGRARLGDAQSPMLRGGGVAFGPKP-RDFTTKLNRKVIQMGMRV 113
                   79***************************************************************************9.****************** PP

                   HHHHHHHTT-EEEES---.-SS--HHHHHHHHHHTT-TTSSEEEEES..SSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHHHH CS
  Ribosomal_L4  98 aLsakakqglllvvdnlepleesktkelvellkklglksksvLivvs..ekdenlvlaarnlpgvevieveslnvydllkadkvvitksaveklee 191
                   aLsa++k++ l vv +le + e+ktk l+e +++lg+   ++L+v++  +  ++l++a++nlp v+++++ +lnvy+ lk  ++v++ +ave++e 
    CDO71645.1 114 ALSARVKEQALGVVRSLE-WTEPKTKTLKERIEELGW--WKTLFVTGldQVPDGLARASNNLPMVDTVTAADLNVYNTLKWPRIVLDLAAVEWFER 206
                   *****************9.******************..99****99655667****************************************985 PP

>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.6e-05      0.14     105     155 ..      97     146 ..      76     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.6e-05
      DUF697 105 nlatklsaraaQGvvagllTarvGlsaieylrplaswgdegkpklsevvke 155
                 +++tkl ++++Q ++  +l+arv  +a  ++r+l+ w + + ++l+e ++e
  CDO71645.1  97 DFTTKLNRKVIQMGMRVALSARVKEQALGVVRSLE-WTEPKTKTLKERIEE 146
                 789********************************.*****9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1507.37
//
Query:       CDO71646.1  [L=340]
Description: hypothetical protein BN946_scf184911.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-123  410.3   0.0   3.2e-123  410.0   0.0    1.1  1  Rad51     Rad51
    2.8e-10   40.1   0.0    3.7e-10   39.7   0.0    1.1  1  RecA      recA bacterial DNA recombination protein
    2.6e-09   37.0   0.1    3.6e-09   36.5   0.1    1.2  1  AAA_25    AAA domain
    5.5e-08   33.3   1.1    2.7e-07   31.1   0.7    2.3  2  HHH_5     Helix-hairpin-helix domain
    6.1e-05   22.5   0.0    0.00019   20.9   0.0    1.8  1  ATPase    KaiC
  ------ inclusion threshold ------
      0.048   13.5   0.1       0.25   11.3   0.0    2.2  2  HHH       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.0   0.0  1.1e-126  3.2e-123       1     254 [.      83     336 ..      83     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: 410.0 bits;  conditional E-value: 1.1e-126
                 -S-EBHHHHHHHHHSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--H CS
       Rad51   1 lgfvsavellekrsellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldk 99 
                 lgf+sa+e++++r el+++ttGsk+lD+lLgGGietg+ite+fGefr+Gk+q+chtl+vt+qlp+++gGgegk++yidtegtfrp rl+++aer +l +
  CDO71646.1  83 LGFQSATEVHARRAELVHITTGSKNLDALLGGGIETGAITELFGEFRTGKSQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPVRLLAVAERLGLSG 181
                 59************************************************************************************************* PP

                 HHHGGGEEEEE--STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.----- CS
       Rad51 100 eevlenvayaRaytiehqeellqqaaallaedkfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfs 198
                 eevl+nvayaRay+++hq +ll++a+al++e++f+llivDs+talyRtdfsgrgel++Rq +lgk+lrtL++ladef++avvitnqv++++d++a  ++
  CDO71646.1 182 EEVLDNVAYARAYNHDHQLQLLTAASALMSESRFCLLIVDSATALYRTDFSGRGELSARQAHLGKFLRTLQRLADEFGIAVVITNQVMSNPDASAGPYM 280
                 *************************************************************************************************** PP

                 -------HHHHHHHH-SEEEEEEE-STTEEEEEEES-SSS-S-EEEEEEETTEEE- CS
       Rad51 199 adpkkPigGlvlahasttRlalrkgkgeeRivkvvdsPnlpeleavfaigeeGied 254
                 a++kkP+gG++lahasttR++l+kg+g +R +kv+dsP+lpe+e++fai ++Gi d
  CDO71646.1 281 ANEKKPVGGNILAHASTTRIQLKKGRGANRQAKVYDSPCLPESETQFAILSSGIGD 336
                 ******************************************************98 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.2e-13   3.7e-10      27     223 ..      94     306 ..      72     317 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.2e-13
                 .-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH......HTT--EEEEESS----HH....HHHHTT--GGG-E....EE CS
        RecA  27 eklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaq......kkggvaafidaehaldpk....yakklGvdidell....vs 111
                 ++ ++  i++Gs  ld  lG GG+  G i+e++G   +Gk+ ++  + + +q         g + +id+e ++ p+     a++lG+  +e+l     +
  CDO71646.1  94 RRAELVHITTGSKNLDALLG-GGIETGAITELFGEFRTGKSQICHTLAVTCQlpvdmgGGEGKCLYIDTEGTFRPVrllaVAERLGLSGEEVLdnvaYA 191
                 34678889************.*******************98864444444422211123478**********9963333699****977776442233 PP

                 ...--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE----....----------- CS
        RecA 112 ...qpdtGeqaleiadalvrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirek....iGvmfgnpett 203
                    + d+  q l  a al+  +   l++vds +al  +++  G    +  + qa l  + lr l+   ++  ++v+  nq+        G  + n +  
  CDO71646.1 192 rayNHDHQLQLLTAASALMSESRFCLLIVDSATALY-RTDFSGR--GELSARQAHL-GKFLRTLQRLADEFGIAVVITNQVMSNpdasAGPYMANEKKP 286
                 22245777788889999*****************96.6778775..3445678876.799*********************865222267777888899 PP

                 --HHHHHHH-SEEEEEEEES CS
        RecA 204 tGGralkfyasvrldvrrie 223
                  GG+ l   ++ r+++++  
  CDO71646.1 287 VGGNILAHASTTRIQLKKGR 306
                 9********99**9999865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   1.2e-12   3.6e-09      12     188 ..      98     267 ..      87     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.2e-12
      AAA_25  12 vadlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlag 110
                   ++ +  + ++ l++g +  g+++ l+G   tGK+ ++  la+++ +            gk+ly+++E++    + Rl av e l + +++ + ++a 
  CDO71646.1  98 LVHITTGSKNLDALLGGGIETGAITELFGEFRTGKSQICHTLAVTCQLPVDMG----GGEGKCLYIDTEGTF--RPVRLLAVAERLGLSGEEVLDNVAY 190
                 555666677889999*99***************************99866554....489***********8..799*********9999999998877 PP

      AAA_25 111 veslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralgg.....densnsdv..galvealeriarrtgaavllvhH 188
                     + +  d++ +llta+     a + e  +  l+++D+ +++++      +e s++++  g+++  l+r+a+++g+av+++ +
  CDO71646.1 191 A---RAYNHDHQLQLLTAA----SALMSE-SRFCLLIVDSATALYRTdfsgrGELSARQAhlGKFLRTLQRLADEFGIAVVITNQ 267
                 5...666666666667776....455566.5688********99988444556666666677*******************9876 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.7     9e-11   2.7e-07       9      55 ..      31      77 ..      26      79 .. 0.96
   2 ?   -1.2   0.0       1.1   3.2e+03      17      28 ..     328     339 ..     324     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 9e-11
                T--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5  9 GiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilel 55
                Gi p+++++l +aG  +ve++a   ++ L +i+Gi++ +A++i+ e+
  CDO71646.1 31 GITPQDIKKLTEAGLHTVEAVAYTPKKNLMTIKGISEQKADKILAEA 77
                9******************************************9775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
                 HHHTTT--SHHH CS
       HHH_5  17 allsaGiesved 28 
                 a+ls Gi+ +e+
  CDO71646.1 328 AILSSGIGDPEE 339
                 89*****99986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.2e-08   0.00019       2     187 ..     102     302 ..     101     315 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.2e-08
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaeky.....gepgvfvtveepa..edlrenakslGwdlekleeegklaiidasesae 93 
                  tg + lD +l gGi  g+++ + Ge  tGK+ ++ + +++    +     + +++++ +e +   + l   a++lG   e++ ++  +a+  a+++++
  CDO71646.1 102 TTGSKNLDALLGGGIETGAITELFGEFRTGKSQICHTLAVTCQLPVdmgggEGKCLYIDTEGTFrpVRLLAVAERLGLSGEEVLDN--VAYARAYNHDH 198
                 7999**********************************999754431111135899**9999764588899999999999999999..88888888866 PP

      ATPase  94 esaeekdkedleelieelaeaikeikakrvviDsitgl.ay........eekeavaReilrqlvrvlkklgvTailvsekss............seeaa 171
                 +           +l++     ++e +   +++Ds t+l  +        ++++a + + lr+l r   + g+  ++++++ s            +++ +
  CDO71646.1 199 Q----------LQLLTAASALMSESRFCLLIVDSATALyRTdfsgrgelSARQAHLGKFLRTLQRLADEFGIAVVITNQVMSnpdasagpymanEKKPV 287
                 5..........3455555666666666666777766662211111111144556666778888887788888888888887766665555555544555 PP

      ATPase 172 ggygveefivdgvivL 187
                 gg+ +++ +++  i+L
  CDO71646.1 288 GGNILAH-ASTTRIQL 302
                 5555555.55555555 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.3e-05      0.25      12      29 ..      58      75 ..      56      76 .. 0.91
   2 ?   -1.1   0.0      0.73   2.2e+03      20      25 ..     277     282 ..     277     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.3e-05
                HHHTSTT-SHHHHHHHHH CS
         HHH 12 eLlalPGVGpktAeaIls 29
                 L++++G+ + +A++Il+
  CDO71646.1 58 NLMTIKGISEQKADKILA 75
                59**************96 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.73
                 SHHHHH CS
         HHH  20 GpktAe 25 
                 Gp++A+
  CDO71646.1 277 GPYMAN 282
                 9****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2439.61
//
Query:       CDO71647.1  [L=464]
Description: hypothetical protein BN946_scf184911.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-54  181.6   0.0    1.7e-53  180.6   0.0    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    9.8e-35  119.1   0.0    1.4e-34  118.7   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00085   19.5   0.2     0.0067   16.6   0.0    2.2  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0058   16.7   0.0      0.013   15.6   0.0    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   0.0   3.7e-57   1.7e-53       2     178 .]     161     344 ..     160     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 3.7e-57
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   + ++al+r+  e   e+r+g w ++++    e++gkt+Gi+G+G+IG+++  +++afgm+v++yd+ +      +    ++++l +ll+esD+v+lh
    CDO71647.1 161 SEIVALSRQYFERAFEMRNGIW-NKQSKGCWEVRGKTLGIVGYGHIGSQLSVLAEAFGMRVLFYDVVNIMPLGSA---RQVDTLATLLSESDFVTLH 253
                   56899*****************.99999999************************************77444233...3689*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHH...........HHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspl...........lelpnviltPHia 178
                   +p  pet+++i+ eela+mkkga+liN aRG++vd  aL++aLksg++agaalDv+ +ep ++ sp+           ++ pnviltPHi+
    CDO71647.1 254 VPELPETTNMISTEELAQMKKGAYLINNARGKVVDIPALIDALKSGHLAGAALDVYPSEPGSNGSPFddqlnpwssalRSIPNVILTPHIG 344
                   ***********************************************************777664444444444444499*********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   3.1e-38   1.4e-34       2     134 .]      58     376 ..      57     376 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 3.1e-38
                 EEEST.CHHHHHHHHHTTEEEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellkeegvevevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvA 99 
                 lile++++e+++ ++ +g++v+  + +++++el++k+ +++a+ +rs+tk+t++vl+a++kL vi+++++G+++vDld a++ Gi V+n p ++++svA
  CDO71647.1  58 LILENISQEAVKAFRSQGFHVDHSTkAMSEDELVQKIGQYHAIGIRSKTKITERVLKAASKLLVIGCFCIGTNQVDLDNAAKAGIPVFNSPFSNSRSVA 156
                 899*************8889999889************************************************************************* PP

                 HHH................................................................................................ CS
                 xxx................................................................................................ RF
  2-Hacid_dh 100 Elt................................................................................................ 102
                 El+                                                                                                
  CDO71647.1 157 ELVmseivalsrqyferafemrngiwnkqskgcwevrgktlgivgyghigsqlsvlaeafgmrvlfydvvnimplgsarqvdtlatllsesdfvtlhvp 255
                 *************************************************************************************************** PP

                 .........................................................................................T-BHHHHHHH CS
                 .........................................................................................xxxxxxxxxx RF
  2-Hacid_dh 103 .........................................................................................aaTeeaqeni 112
                                                                                                          ++Teeaq+ i
  CDO71647.1 256 elpettnmisteelaqmkkgaylinnargkvvdipalidalksghlagaaldvypsepgsngspfddqlnpwssalrsipnviltphigGSTEEAQRMI 354
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 113 aeeaaenlvaflkgespanavn 134
                 +ee+  +l+++l+++s+  avn
  CDO71647.1 355 GEEVSSALIRYLNNGSTVGAVN 376
                 *****************99998 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.14   6.4e+02      29      55 ..      62      93 ..       5     150 .. 0.67
   2 !   16.6   0.0   1.5e-06    0.0067       2      91 ..     197     283 ..     196     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.14
                   -SSHHHHHHHHHTT.....EEE-SSHHHHHHH CS
  NAD_binding_2 29 nrtkekveelvaeg.....akaaesieelvas 55
                   n ++e+v+++ ++g      + a s  elv++
     CDO71647.1 62 NISQEAVKAFRSQGfhvdhSTKAMSEDELVQK 93
                   45566666666666333333333333344444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.5e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgst 91 
                    +g++G G +Gs++    ++ g++v +y++      +++  g a+ +++++ l+++ d+v + v++ +++ ++i+   l+++kkg++li+ + 
     CDO71647.1 197 LGIVGYGHIGSQLSVLAEAFGMRVLFYDVV-----NIMPLGsARQVDTLATLLSESDFVTLHVPELPETTNMISTeELAQMKKGAYLINNAR 283
                    79**************************76.....3343333899*************************9999887788*******98765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06     0.013      22     108 ..     193     280 ..     184     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
                    TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-S....SSSSSB-HHHHCCS-TTEEEEE CS
  AdoHcyase_NAD  22 aGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvttt....Gnkdiitlehlkkmkddaivcn 108
                     Gk+  ++GyG +G   +   +++G rv+  +v  i  l +a    +v tl ++++++d+v         ++++i++e+l++mk+ a + n
     CDO71647.1 193 RGKTLGIVGYGHIGSQLSVLAEAFGMRVLFYDVVNIMPLGSAR---QVDTLATLLSESDFVTLHVpelpETTNMISTEELAQMKKGAYLIN 280
                    69**********************************9999876...788888888888866543312226799***********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3543.61
//
Query:       CDO71648.1  [L=369]
Description: hypothetical protein BN946_scf184911.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-19   69.8   0.0    3.6e-19   69.3   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
    1.9e-15   56.9   0.3    4.8e-15   55.7   0.3    1.6  1  His_biosynth   Histidine biosynthesis protein
    1.7e-08   34.5   0.0    1.9e-05   24.6   0.0    2.4  2  SNO            SNO glutamine amidotransferase family
    5.4e-06   26.1   0.0    8.1e-06   25.6   0.0    1.4  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
  ------ inclusion threshold ------
      0.016   14.9   0.0       0.19   11.5   0.0    2.1  2  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0     1e-22   3.6e-19       2     176 ..       5     196 ..       4     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1e-22
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgr... 90 
                 l+D++++++++l++ l +lg++ e +   a++++           l+ +G+g+ g         g  e ++e++ +++P++GIC GmQ+l+ ++ +   
  CDO71648.1   5 LLDYGAGNVQSLANTLKKLGHEFEWISSPADFHKA--------TSLIFPGVGAFGsaidgliSRGLYEPLREYIASGKPYFGICIGMQVLFRSSLEsss 95 
                 79******************988888777766666........5799**********9999988889999999999*****************999666 PP

                 .....EEE.........EEECEEEEEEEEEEEETTT.CGGTTTTSEEEEEEEEEEEEESG..CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTT CS
      GATase  91 .....kvv.........kekekehhggtmrlgddet.allyglknevierhrHryevnpk..elepaglevtakseddeelmeiiekknpfvgvQFHPE 172
                        +           k+ +h+g+++    d++ +  +gl ++   ++ H++ +  +  + e a++  + ++    e+  +  +k +++++QFHPE
  CDO71648.1  96 skglgI-IpsdiglfsnADKSVPHMGWNSVEFLDPEeKAHEGLRPDASYYFVHSFRAAYEwdRPEVAQWAHSTTQYGR-EIFLATVRKGNVFACQFHPE 192
                 666640.266666888877779*******999999978999***************9987666666667776666444.55544444445********* PP

                 STTS CS
      GATase 173 stst 176
                 ++ +
  CDO71648.1 193 KSGQ 196
                 9865 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.3   1.3e-18   4.8e-15     123     228 ..     235     350 ..     230     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.3e-18
                   GEEEEEEEEE...CEEEEETTTTEE......EEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH CS
  His_biosynth 123 kivvaiDarr...gykvaikgwree......tgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelk 210
                   ++++  D+r    g  v++kg + +       +    e a ++ +lg    l   idrdGt  G+dlel++ ++++v+ipv+as G+g+ e++ e++
    CDO71648.1 235 RVIACMDVRSnddGDLVVTKGDQYDvrerttANGVQAEAAGAVRNLGKPVALAARIDRDGTGLGYDLELISLVRRSVRIPVVASSGAGRKEHFVEVF 331
                   677777777744422333333333322222222233466778999999999********************************************** PP

                   .HTTCSEEEESHHHHTTSS CS
  His_biosynth 211 .segvdavivgsalyegel 228
                    ++gv+a++++ +++ +e+
    CDO71648.1 332 eKTGVEAALAAGIFHRREV 350
                   88899**********9886 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.2e-09   1.9e-05       6      96 ..      11     102 ..       9     111 .. 0.85
   2 !    7.4   0.0   0.00099       3.5     153     185 ..     173     208 ..     153     211 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.2e-09
                 SSHHHHHHHHHHTTSEEEEE-SGGGGCC-SEEEE-SS-..HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHH.HHHCCEETTBSS-SS--C CS
         SNO   6 GaveehveaikkclaenktvkrkedlaevdaliiPGGe..stamskliertglyedllefvknsekvvlGtCaGl.illskelenelvktlell 96 
                 G+v+   + +kk + e   + ++ d+++  +li PG      a+  li r glye+l+e+++ + k+ +G C G+ +l+   le++  k l+++
  CDO71648.1  11 GNVQSLANTLKKLGHEFEWISSPADFHKATSLIFPGVGafGSAIDGLISR-GLYEPLREYIASG-KPYFGICIGMqVLFRSSLESSSSKGLGII 102
                 778888999**************************954125799999987.89*********99.**********4455567788888888876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00099
                 EEEEEE..ETTEEEESS-GGGS.TTHCHHHHHHHHH CS
         SNO 153 eivvak..qkkilatsfhPela.eddirvhdyfvee 185
                 ei  a   +++++a+ fhPe + + + rv d +++e
  CDO71648.1 173 EIFLATvrKGNVFACQFHPEKSgQAGLRVLDAWLRE 208
                 4444443277**********9824578998888776 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.3e-09   8.1e-06      25     115 ..      25     106 ..       7     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.3e-09
    GATase_3  25 vrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdiet 115
                  ++++++ +  ++ ++a  +i+pG     +++  l ++gl e ++e++++g+p +giC G+q+L ++  +++       +++glg+++ ++
  CDO71648.1  25 HEFEWIS-SPADF-HKATSLIFPGVGAFGSAIDGLISRGLYEPLREYIASGKPYFGICIGMQVLFRSSLESS-------SSKGLGIIPSDI 106
                 4456666.66666.45999**********************************************9987765.......889999999776 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.19      99     118 ..      67      86 ..      62      94 .. 0.91
   2 ?    0.9   0.0     0.088   3.1e+02     203     216 .]     179     192 ..     165     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
  Peptidase_C26  99 raalergvPilgiCrGlqll 118
                    r+ +++g+P +giC G+q+l
     CDO71648.1  67 REYIASGKPYFGICIGMQVL 86 
                    78899*************98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.088
  Peptidase_C26 203 eakafvlgvQwHPE 216
                     +k  v++ Q+HPE
     CDO71648.1 179 VRKGNVFACQFHPE 192
                    5567899******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2537.59
//
Query:       CDO71649.1  [L=468]
Description: hypothetical protein BN946_scf184911.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   55.5   0.1    2.8e-14   54.0   0.1    1.8  1  Pal1      Pal1 cell morphology protein


Domain annotation for each model (and alignments):
>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   1.6e-18   2.8e-14       1      44 [.     150     192 ..     150     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.6e-18
        Pal1   1 DtiDkLDvtglfgglfHHdGPfDAvtphrNknskaaPvlAfpkd 44 
                 D+iD+LD +g+ g +fHHdGPfDA++p rN+++ +aP+lA+   
  CDO71649.1 150 DVIDRLDFSGV-GPMFHHDGPFDACAPSRNRHRTKAPMLAWSSA 192
                 99********9.68**************************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3537.66
//
Query:       CDO71650.1  [L=323]
Description: hypothetical protein BN946_scf184911.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-05   23.4   0.0       0.15   11.3   0.0    2.7  3  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
      0.003   17.1   0.0       0.14   11.6   0.0    2.2  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   9.5e-05      0.85       6      63 ..      17      74 ..      12      99 .. 0.87
   2 !   11.3   0.0   1.7e-05      0.15     147     177 ..     174     207 ..     158     263 .. 0.81
   3 ?   -0.8   0.0     0.083   7.4e+02     272     290 ..     284     302 ..     262     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 9.5e-05
                 -SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-S CS
  Meth_synt_2  6 iGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRg 63
                 +GS     e+ e r ++++g++++ee +k   e    +v+ q+++g+ v+ +ge  R 
   CDO71650.1 17 VGSLLRPRELVEKRIAFNNGQCTAEELRKLEDETLPGIVKLQKDAGLGVITDGEIHRD 74
                 6777777888999*****************************************9886 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHHHHHHHHHHTT-SEEEEE-T...T CS
  Meth_synt_2 147 eaaaqialalrdevkdLeaaGikviQiDep...a 177
                  e  a+++ a+r+e+++L + G+  +Q+D+p   +
   CDO71650.1 174 EYFADLVQAFREEIHELYELGCRYVQFDDPgfsF 207
                  567899************************5442 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.083
                  S--THHHHHHHHHCHHCTS CS
  Meth_synt_2 272 rvpsmeeiaalikkaldva 290
                    +smeei+a++  a++++
   CDO71650.1 284 YLESMEEIKARVACAVEIV 302
                  6799****99999888874 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0059        53      14      60 ..      24      70 ..      18      77 .. 0.92
   2 !   11.6   0.0   1.6e-05      0.14     173     210 ..     172     209 ..     161     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0059
                 THHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES- CS
  Meth_synt_1 14 RelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvnd 60
                 Rel +   ++ +g++++eeL+k  +e     +k qk+ag+ +i+ ++
   CDO71650.1 24 RELVEKRIAFNNGQCTAEELRKLEDETLPGIVKLQKDAGLGVITDGE 70
                 999999999*******************************9998765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.6e-05
                  HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSG CS
  Meth_synt_1 173 klellekLlpvYkelleeLkeagvewvqidEPalvldl 210
                    e + +L+++++e ++eL e g+++vq+d+P +++  
   CDO71650.1 172 DGEYFADLVQAFREEIHELYELGCRYVQFDDPGFSFFC 209
                  4568899*************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2350.55
//
Query:       CDO71651.1  [L=208]
Description: hypothetical protein BN946_scf184911.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-76  255.5   4.8    3.8e-76  255.0   4.8    1.2  1  Ribosomal_L13e  Ribosomal protein L13e


Domain annotation for each model (and alignments):
>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.0   4.8   2.1e-80   3.8e-76       1     180 []       8     184 ..       8     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 255.0 bits;  conditional E-value: 2.1e-80
  Ribosomal_L13e   1 vipnnhfrKdwqrrvktwfdqparkkrRrearqakaakvaprpvekLrPvVrcptvrYntkvraGrGFtleElkaagiskklArtiGIavDhRrk 95 
                     v+++nhfrKdwq+rv+twfdqp+rk rRr+ar++kaak+++rp+e+LrP+Vr++tvrYn+k+r+GrGFtl+Elk+agi kk Ar iGI vDhRr+
      CDO71651.1   8 VLHDNHFRKDWQSRVRTWFDQPGRKLRRRNARKEKAAKLGVRPLELLRPAVRAQTVRYNRKLREGRGFTLAELKEAGIGKKEARGIGIVVDHRRR 102
                     5899******************************************************************************************* PP

  Ribosomal_L13e  96 nkseeslkaNveRLkeYkskLilfprkakkpkkgdaskeelkaakqvkvaavlpikkeakkekaraiteeekkfkayrtlrkara 180
                     n see+ + NveRLk+Yk++Li+fpr+akkpkkgd++ eel+a     ++a+lpi ++ ++e++r+it+ee++f+ayrtlr++ra
      CDO71651.1 103 NLSEEGKALNVERLKAYKARLIVFPRNAKKPKKGDSTGEELSAPI---TRATLPIPSPFVREEPRKITDEEREFNAYRTLRDQRA 184
                     ****************************************99888...45689****************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1550.88
//
Query:       CDO71652.1  [L=526]
Description: hypothetical protein BN946_scf184911.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-25   89.3  26.2    4.9e-25   88.8  26.2    1.2  1  FA_desaturase  Fatty acid desaturase
      9e-08   32.2   0.0    1.7e-07   31.3   0.0    1.5  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.063   13.6   0.0       0.14   12.4   0.0    1.6  1  DUF5485        Family of unknown function (DUF5485)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8  26.2   8.1e-29   4.9e-25       3     252 ..     213     488 ..     211     490 .. 0.71

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 8.1e-29
  FA_desaturase   3 wlalllalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplal.........srf 89 
                    wl+ + al+lglf+ ++  ++aH+++H  ++++ +  r ++ ++   + ++ g s+ +w   H++HH  +n+p +Dpd+++l+          s +
     CDO71652.1 213 WLV-PSALFLGLFW-QQLTFFAHDLGHVGVTHNWAADRLISIFV---ADFLGGLSIGWWVNNHNVHHLVPNHPTHDPDIQHLPFfaispvflnSLW 303
                    444.558******4.33369*******99997777777777777...*********************************9999999999777444 PP

  FA_desaturase  90 eglfry..............llrlllgllvlgwllalvlglwlrrlarrrapsksrrrk..wrllawlllllawlglwlalllllglall.....l 164
                    ++++++              + +l++ +    + la++++ ++  +++    +++ rr+   r++ w+ +++ +l+++++ +ll g +++     +
     CDO71652.1 304 SSYYKRemtfdafgklfvsmQHKLFYVV----LSLARFNL-YANSYGYLANTAFEPRRFrgGRWWWWAEIACLGLFFVWFGALLRGCGTWrralvY 394
                    4444445555544553333322222222....33333333.2222222222222222223356666666666446666666666666655677633 PP

  FA_desaturase 165 wlvplllllfllalvlnyveHyg.........gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyr 251
                     lv ++++ ++++  + +++H+          +++  rq++t+ ++  +s+   +++g+l+++++HHlfP++p ++L+e++ +++e+++e gl y 
     CDO71652.1 395 LLVSHIAASPVHV--QIVLSHFSrstddlgpaESFFARQLRTTVDVI-CSPRIEFIHGGLHLQVTHHLFPRLPRHNLREASLIVKEFAKERGLEYA 487
                    3333333333333..38999999******9**9**************.********************************************9997 PP

  FA_desaturase 252 s 252
                    +
     CDO71652.1 488 E 488
                    6 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.8e-11   1.7e-07      27      73 ..      37      81 ..      10      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.8e-11
                TTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5 27 kflskhpGgesailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73
                ++l  hpGg+ +il++ G+Dat++++++ hs++ ++++  + + +G++
  CDO71652.1 37 SWLAAHPGGQLSILHFVGRDATDEVEAF-HSDETLQRM--RgFIIGRV 81
                788*************************.999999999..55999987 PP

>> DUF5485  Family of unknown function (DUF5485)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05      0.14      28      56 .]     177     205 ..     172     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
     DUF5485  28 avdaklytPrfifcatshfvrhsmlftls 56 
                  vda ly  rfi      f+r+s+l  ls
  CDO71652.1 177 VVDAGLYKTRFITGYGPEFIRYSLLALLS 205
                 69**********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3908.56
//
Query:       CDO71653.1  [L=468]
Description: hypothetical protein BN946_scf184911.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0056   15.6   1.0      0.012   14.5   0.1    1.8  2  Sugar_tr      Sugar (and other) transporter
  ------ inclusion threshold ------
      0.043   13.9   0.7       0.07   13.2   0.7    1.3  1  Podoplanin    Podoplanin
      0.084   12.5   0.0       0.13   11.9   0.0    1.2  1  CD34_antigen  CD34/Podocalyxin family
        3.7    8.3   8.1       0.67   10.6   3.6    2.0  2  DUF3123       Protein of unknown function (DUF3123)
        6.9    7.1   8.9       0.82   10.1   2.6    2.1  2  MGC-24        Multi-glycosylated core protein 24 (MGC-24), si


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.17     6e+02     113     167 ..      98     150 ..      86     163 .. 0.79
   2 !   14.5   0.1   3.5e-06     0.012      43      76 ..     254     300 ..     229     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-T CS
    Sugar_tr 113 GigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsna 167
                 G++ G++s l+  ++++ + k+ + +     q+  ++  ++++++++ ++++++a
  CDO71653.1  98 GFATGGVSKLI--TVGKPSGKNTCNTTDPGAQFTFQTNSFLGQCLTYTFDHYDGA 150
                 66666666664..45677777777777778899999999**********999874 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.5e-06
                 H................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHH CS
    Sugar_tr  43 e.............ssvlsglivsiflvGaiiGslfagllgdrfGRk 76 
                 +             ss++sg++  ++++G+++G++++g+l+ ++ R+
  CDO71653.1 254 SaaptatsapqdgsSSKTSGATIVAAVIGCLVGAFIVGTLIWFYLRR 300
                 02345666677777999**********************99888776 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   1.9e-05      0.07      41     155 ..     197     300 ..     183     304 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  41 kvtpGvednvvttgaseepyesglttlvptstesvtdlrledlptaestvkakeesqstttlnvvtshstekvgeetettvekdGLatvtLvgiivGvl 139
                 k+  G   +v t g s + ++  + +  ++    +  + +  +pt  +t+ ++  + st+++ ++ts ++   g + +t+        +t+v  ++G l
  CDO71653.1 197 KGRDGGVTQVYTVGLSDDATCLTKDSPAAVAHPPTQTTPASSKPT--ATQSQGSSTSSTSAAPTATSAPQ--DGSSSKTS-------GATIVAAVIGCL 284
                 555555566677777777444222221222222222222233333..45556666677777777777772..23333333.......578999999999 PP

                 XXXXXXXXXXXXXXXX CS
  Podoplanin 140 laigfiggiiivvvrk 155
                 ++  ++g +i   +r+
  CDO71653.1 285 VGAFIVGTLIWFYLRR 300
                 9998899888777766 PP

>> CD34_antigen  CD34/Podocalyxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.13      93     134 ..     262     302 ..     251     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
  CD34_antigen  93 qeedirseqdyskkllialvtsglllaiLlvagyYgclhrRl 134
                    ++d  s ++ s  +++a v++ l+ a+++ +++++ l rR+
    CDO71653.1 262 APQD-GSSSKTSGATIVAAVIGCLVGAFIVGTLIWFYLRRRR 302
                   4455.67889999***********************999998 PP

>> DUF3123  Protein of unknown function (DUF3123)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.6   0.00019      0.67      10      98 ..     183     263 ..     180     276 .. 0.69
   2 ?   -2.2   0.1       1.8   6.6e+03      65      81 ..     364     380 ..     353     393 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
     DUF3123  10 lktGrqlVlwlrAvvvSaaeeGyLevvYngnfppedPfrtvrVareevklikvspkaappsaspstattasasattaavaskkkaapap 98 
                 +k+G  lV+ l A  +S+  +G ++ vY++++  +d     + ++  v     +p+ ++p++s++tat+++ s+t++++a+ +++ +ap
  CDO71653.1 183 VKSGTPLVF-LAA--DSKGRDGGVTQVYTVGLS-DDATCLTKDSPAAVA---HPPTQTTPASSKPTATQSQGSSTSSTSAAPTAT-SAP 263
                 567777776.333..788888888999*****9.787777777887777...555677777888888999988777766543333.444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
     DUF3123  65 kaappsaspstattasa 81 
                   +pps   + a   sa
  CDO71653.1 364 PRPPPSFVRARASVVSA 380
                 34444444333333333 PP

>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.27   9.9e+02      84     111 ..     109     137 ..      67     140 .. 0.61
   2 ?   10.1   2.6   0.00023      0.82      49     127 ..     219     298 ..     201     302 .. 0.51

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.27
      MGC-24  84 tsgttn.ttvtptsqparkstFDaAsFiG 111
                 t g+++ +    t++p  + tF + sF+G
  CDO71653.1 109 TVGKPSgKNTCNTTDPGAQFTFQTNSFLG 137
                 444433123345666888999***99999 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00023
      MGC-24  49 telcsaaskstpkptnsta.ktttkpsstttstsvatsgttnttvtptsqpark.s.tFDaAsFiGGivLvLgvqAviFFly 127
                 t+  +aa ++ p++t+ ++ k+t+++s+ +  ++++ts+++++t +p++ ++ k s +   A+ iG +v    v   i+F +
  CDO71653.1 219 TKDSPAAVAHPPTQTTPASsKPTATQSQGS--STSSTSAAPTATSAPQDGSSSKtSgATIVAAVIGCLVGAFIVGTLIWFYL 298
                 444444445545444333203333222222..22234555555555555433330212335778888887777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3186.13
//
Query:       CDO71654.1  [L=305]
Description: hypothetical protein BN946_scf184911.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2021.62
//
Query:       CDO71655.1  [L=220]
Description: hypothetical protein BN946_scf184911.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1552.95
//
Query:       CDO71656.1  [L=802]
Description: hypothetical protein BN946_scf184911.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-43  145.6  12.8    2.3e-07   31.4   0.0    6.7  6  WD40          WD domain, G-beta repeat
    2.8e-32  111.7   0.0    5.7e-32  110.7   0.0    1.5  1  TFIID_NTD2    WD40 associated region in TFIID subunit, NTD2 d
    4.1e-12   46.2   0.0    0.00023   21.4   0.0    5.1  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    2.2e-05   23.3   3.5       0.58    8.7   0.0    4.9  5  Nup160        Nucleoporin Nup120/160
     0.0023   17.8   0.1     0.0093   15.9   0.1    2.0  2  LisH          LisH
     0.0036   17.2   0.0      0.029   14.2   0.0    2.2  3  eIF2A         Eukaryotic translation initiation factor eIF2A
     0.0046   15.6   0.0     0.0094   14.6   0.0    1.4  1  ELYS-bb       beta-propeller of ELYS nucleoporin
     0.0049   15.9   0.0       0.79    8.6   0.0    3.5  4  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
  ------ inclusion threshold ------
      0.028   13.0   0.0      0.046   12.2   0.0    1.3  1  Cytochrom_D1  Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.7e-05     0.055       7      38 .]     447     481 ..     443     481 .. 0.80
   2 !   14.9   0.0   1.8e-05     0.036       2      38 .]     514     557 ..     513     557 .. 0.88
   3 !   31.4   0.0   1.1e-10   2.3e-07       5      38 .]     565     599 ..     561     599 .. 0.92
   4 !   29.2   0.1   5.7e-10   1.1e-06       4      38 .]     606     641 ..     603     641 .. 0.90
   5 !   27.9   0.0   1.5e-09   2.9e-06       1      38 []     645     683 ..     645     683 .. 0.93
   6 !   31.4   0.3   1.2e-10   2.4e-07       1      38 []     687     725 ..     687     725 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
                 EESS.SS..EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   7 ltGH.ss..vtslafspdgawlasG.sdDgtvriWd 38 
                 +t H  +  + ++ fspd ++la+G s    +r+W+
  CDO71656.1 447 YTFHdVGegIPCCEFSPDTSLLAAGfS-ESYIRLWS 481
                 667752245889*************55.*******5 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.8e-05
                 EEEEEEESS.SSEEEEEEETTSSE......EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw......lasGsdDgtvriWd 38 
                 +++r+l GH ++v+s++f+p g        l+s+s D t r+W+
  CDO71656.1 514 STTRKLIGHsGPVYSVSFDPVGGSatppryLLSASADATTRLWS 557
                 67899****777*****9999999999999888999*******5 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 1.1e-10
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                   ++GH ++v+++++sp g ++a++s+D+t r+W+
  CDO71656.1 565 VAYRGHqNPVWDVKWSPMGIYFATASRDRTARLWS 599
                 569***999*************************5 PP

  == domain 4  score: 29.2 bits;  conditional E-value: 5.7e-10
                 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 lr++ GH s+v+++af+p++ +l +++s D+t r+Wd
  CDO71656.1 606 LRIFAGHlSDVNAVAFHPNSLYLgTASS-DCTARLWD 641
                 899*******************954556.*******9 PP

  == domain 5  score: 27.9 bits;  conditional E-value: 1.5e-09
                 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 g+c+r++  H++ v+ l fspdg++la++++D  +r+Wd
  CDO71656.1 645 GSCVRVFYRHDDiVSTLTFSPDGRYLATAGEDLAIRLWD 683
                 68********6657************************9 PP

  == domain 6  score: 31.4 bits;  conditional E-value: 1.2e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c+++ tGH  s++s+afs +++ l+sGs D tvr Wd
  CDO71656.1 687 GKCVKKMTGHtASIYSMAFSAESSVLVSGSADWTVRCWD 725
                 79********888*************************9 PP

>> TFIID_NTD2  WD40 associated region in TFIID subunit, NTD2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   2.9e-35   5.7e-32       3     116 ..     142     255 ..     140     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 2.9e-35
                 XXHHHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGGGGHH.HHHHHTT--SHHHHHHSHHHHHHHHS-EEEE CS
  TFIID_NTD2   3 dpekyekayelLkkwiessldiykpeLsrllyPvFvhlyLelvakgaeeeakkFfekfkedhealhkedlkkLasisspehleenelakafrenkyrik 101
                 dp++ ++ +++L+ w++ sld+y+pe + +l+P+F h+yL+lv++g  e+a+ F+++f+++ ++ h ++l++L++i+ p h++++e+a++fr++ky+++
  CDO71656.1 142 DPTDKHEGFRELEAWVDGSLDMYRPEFRPILFPIFCHFYLDLVQQGLREAAQDFYSTFSHSISSVHYSTLNHLSTITLPYHVQTDEVAQRFRTEKYTVR 240
                 67788999******************************************************************************************* PP

                 EEHHHHHHHHHHHHH CS
  TFIID_NTD2 102 lskaafelLlrfLee 116
                 +s++ f+lL+ +L+e
  CDO71656.1 241 MSRSGFSLLVGWLTE 255
                 **********99986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.014        28      38      71 ..     453     486 ..     443     499 .. 0.84
   2 ?    5.3   0.0     0.012        25      32      71 ..     558     604 ..     547     612 .. 0.79
   3 !   10.9   0.0   0.00021      0.42      27      88 ..     606     662 ..     600     663 .. 0.84
   4 !   21.4   0.0   1.2e-07   0.00023      37      90 ..     654     706 ..     650     708 .. 0.91
   5 ?    3.0   0.0     0.065   1.3e+02      37      69 ..     696     728 ..     692     731 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  ++ + + +++pd +lLa ++s++ +rl + + +k
   CDO71656.1 453 GEGIPCCEFSPDTSLLAAGFSESYIRLWSLKGEK 486
                  667788899******************9987555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
  ANAPC4_WD40  32 l.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  l       +  ++++ v +++W+p g  +a a  d + rl +   + 
   CDO71656.1 558 LdtmtnvvAYRGHQNPVWDVKWSPMGIYFATASRDRTARLWSTDRTS 604
                  4444444555789999**********************999877655 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                   r++ +    + s v+++a++p+   L  a sd + rl d++ g +v+ +  +++  v++l+
   CDO71656.1 606 LRIFAG----HLSDVNAVAFHPNSLYLGTASSDCTARLWDVQRGSCVRVFYRHDD-IVSTLT 662
                  555555....6789**********************************9988877.577776 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 1.2e-07
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +d  v+ L ++pdg+ La a +d ++rl d  sgk+v++++ ++ + + ++ ++
   CDO71656.1 654 HDDIVSTLTFSPDGRYLATAGEDLAIRLWDLGSGKCVKKMTGHTAS-IYSMAFS 706
                  577899**********************************999885.9999876 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.065
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +  ++ s+a++ + ++L+ + +d +vr  d++s
   CDO71656.1 696 HTASIYSMAFSAESSVLVSGSADWTVRCWDVKS 728
                  677899***********************9987 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00029      0.58     181     252 ..     493     563 ..     482     568 .. 0.91
   2 ?    2.2   0.1     0.027        53     232     254 ..     585     607 ..     582     618 .. 0.86
   3 !    5.0   0.0     0.004         8     229     256 ..     624     651 ..     612     665 .. 0.84
   4 ?    2.1   0.0     0.029        58     229     255 ..     666     692 ..     655     695 .. 0.83
   5 ?    0.6   0.1     0.088   1.7e+02     222     250 ..     702     729 ..     690     769 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00029
                 EEEEEEE-------B--TTTT.TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 181 awkesvfepksfllslsgllglladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkc 252
                 +++ s+++++s+l+++++  g  ++  ++ sg+   +s d++ + ++    yl+++s d + r+W+l+t++ 
  CDO71656.1 493 DFDSSSIRDSSSLSKIREKGGSTTRKLIGHSGPVYSVSFDPVGGSAT-PPRYLLSASADATTRLWSLDTMTN 563
                 67889999999******9999999999*******9999999999999.9********************875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.027
                 EEEEEETT-EEEEEETTTTEEEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkcla 254
                 y +++srd++ r+W+++  + l+
  CDO71656.1 585 YFATASRDRTARLWSTDRTSALR 607
                 5689***********99877665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.004
                 TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclati 256
                 ++ yl ++s+d + r+W+++ g+c++++
  CDO71656.1 624 NSLYLGTASSDCTARLWDVQRGSCVRVF 651
                 677999*******************975 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.029
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 +  yl+++  d  +r+W+l +gkc+  
  CDO71656.1 666 DGRYLATAGEDLAIRLWDLGSGKCVKK 692
                 667999******************975 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.088
                 ET.....TTTEEEEEETT-EEEEEETTTT CS
      Nup160 222 avavveigqtylfalsrdgkLrvWnlltg 250
                 ++a++  ++++l++ s d ++r W+++++
  CDO71656.1 702 SMAFSA-ESSVLVSGSADWTVRCWDVKSA 729
                 444454.999****************986 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   4.7e-06    0.0093       4      26 ..      35      57 ..      35      57 .. 0.95
   2 ?   -1.8   0.0       1.7   3.4e+03      11      22 ..     183     194 ..     183     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.7e-06
                HHHHHHHHHHCT-HHHHHHHHHH CS
        LisH  4 NrLIydYLvkeGyeetAeaFekE 26
                ++LI++YL+++G++e+ + F++E
  CDO71656.1 35 DQLILEYLRARGLKEAEKCFLEE 57
                79****************99988 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
                 HHHCT-HHHHHH CS
        LisH  11 LvkeGyeetAea 22 
                 Lv  G+ e+A+ 
  CDO71656.1 183 LVQQGLREAAQD 194
                 8999******85 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0044       8.8      34     163 ..     498     633 ..     474     651 .. 0.57
   2 !   14.2   0.0   1.5e-05     0.029      58     161 ..     570     673 ..     546     680 .. 0.80
   3 !    8.0   0.0    0.0012       2.3      84     167 ..     636     721 ..     624     724 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0044
                 EEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-E....EEEESSSSCEEEEEECS..CEEE.EEEEEES--EEEE-TTSSEEEEE-TTSSS- CS
       eIF2A  34 syygetelyliklkkkksevvelkkegpihdvaWspkskef....aviyGkmpakvslfdlk..vkvi.skleeqkrNtiffspkgklvllaGfgnlaG 125
                 s   +++l  i++k++++ +  + + gp++ v+ +p +       +++   ++a++ l++l+   +v+ ++ ++++   +++sp g ++++a    +  
  CDO71656.1 498 SIRDSSSLSKIREKGGSTTRKLIGHSGPVYSVSFDPVGGSAtpprYLLSASADATTRLWSLDtmTNVVaYRGHQNPVWDVKWSPMGIYFATASRDRT-A 595
                 5555666666666666666666666666666666665544312224566666666666666433333302333444556666666666666664444.3 PP

                 EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE- CS
       eIF2A 126 eleiwdvkkkkkiakaeaanatlvewspdgryvlTatt 163
                 +l   d+++   i   + ++   v ++p++ y+ Ta++
  CDO71656.1 596 RLWSTDRTSALRIFAGHLSDVNAVAFHPNSLYLGTASS 633
                 33333333444444445555566666666666666655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.5e-05
                 SSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE CS
       eIF2A  58 kegpihdvaWspkskefaviyGkmpakvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvew 151
                 +++p+ dv+Wsp +  fa      ++++ l++++   +  i+  + +  N++ f+p+  ++ +a       +  +wdv+  ++  +   +    +++ +
  CDO71656.1 570 HQNPVWDVKWSPMGIYFATA--SRDRTARLWSTDrtsALRIFAGHLSDVNAVAFHPNSLYLGTASSDC---TARLWDVQrgSCVRVFYRHDDIVSTLTF 663
                 6789**********999865..688999999995444666777788899********99998876544...5899****66677777777888999*** PP

                 -TTSSEEEEE CS
       eIF2A 152 spdgryvlTa 161
                 spdgry++Ta
  CDO71656.1 664 SPDGRYLATA 673
                 *********9 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0012
                 EEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSSEEEEEE-TTT- CS
       eIF2A  84 kvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl..vewspdgryvlTattaprl 167
                 ++ l+d++   +  ++  + +   t+ fsp g+++++aG  +l  ++ +wd  + k+++k+   +a+   + +s +++ ++  +  + +
  CDO71656.1 636 TARLWDVQrgsCVRVFYRHDDIVSTLTFSPDGRYLATAG-EDL--AIRLWDLGSGKCVKKMTGHTASIysMAFSAESSVLVSGSADWTV 721
                 566777755445555666666778999999999999999.778..79999999999998888777764225677777777776666665 PP

>> ELYS-bb  beta-propeller of ELYS nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.7e-06    0.0094     189     253 ..     422     486 ..     416     499 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.7e-06
     ELYS-bb 189 vvtkipaeipklreaatregrhlclqlaspsgvavsalsyisrtnqlavgfsdgylslwnlktlk 253
                 ++ +++a+ p+   a +r+   +c       g ++ +  +   t  la gfs+ y++lw lk  k
  CDO71656.1 422 MLNNANANTPQGAAARARALPSICAYTFHDVGEGIPCCEFSPDTSLLAAGFSESYIRLWSLKGEK 486
                 56788999999999999999****************************************99754 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.65   1.3e+03     190     215 ..     456     481 ..     446     486 .. 0.87
   2 ?   -1.5   0.0      0.48   9.6e+02     185     214 ..     568     598 ..     552     608 .. 0.79
   3 !    8.6   0.0    0.0004      0.79     185     215 ..     653     683 ..     630     688 .. 0.81
   4 ?    2.0   0.0     0.041        81     184     218 ..     693     728 ..     686     737 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.65
    Ge1_WD40 190 iveaafspdGtalatasedGevkffq 215
                 i +  fspd   la+  ++ +++++ 
  CDO71656.1 456 IPCCEFSPDTSLLAAGFSESYIRLWS 481
                 66789*****************9996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.48
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkff 214
                 + h   + +  +sp G   atas d + +++
  CDO71656.1 568 RGHQnPVWDVKWSPMGIYFATASRDRTARLW 598
                 445436889999************9998887 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0004
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffq 215
                 +++  +++ +fspdG  lata ed  ++++ 
  CDO71656.1 653 RHDDIVSTLTFSPDGRYLATAGEDLAIRLWD 683
                 3445788889******************996 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.041
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvyl 218
                 ++ h+  i + afs++  +l   s+d +v+ + v  
  CDO71656.1 693 MTGHTaSIYSMAFSAESSVLVSGSADWTVRCWDVKS 728
                 55554499************************9975 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05     0.046      14      94 ..     634     715 ..     622     719 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                   GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEE.EEEE--TTSEEEEE CS
  Cytochrom_D1  14 agkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnar.svavSqddryvivg 94 
                   +   +l d ++ + + v+  + ++  +  f++dgRy+ ++g D  + l DL   + v+++   + ++ s+a S +   ++ g
    CDO71656.1 634 DCTARLWDVQRGSCVRVFYRHDDIVSTLTFSPDGRYLATAGEDLAIRLWDLGSGKCVKKMTGHTASIySMAFSAESSVLVSG 715
                   555677788888888999999999999****************************999987555443377777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5585.02
//
Query:       CDO71657.1  [L=548]
Description: hypothetical protein BN946_scf184911.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.53   10.8   2.1        1.9    9.0   0.1    2.2  2  GOLD_2    Golgi-dynamics membrane-trafficking


Domain annotation for each model (and alignments):
>> GOLD_2  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4     0.039     7e+02      43      77 ..      83     117 ..      59     134 .. 0.58
   2 ?    9.0   0.1    0.0001       1.9      32      91 ..     158     214 ..     150     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.039
      GOLD_2  43 tskavsvkvsesddeedeeeeeeeekveeedvekg 77 
                 +s++v     +s +e++++e  + +k + ++v +g
  CDO71657.1  83 ESTTVVASTKHSREEDSDQEGSRRRKKKIAKVLAG 117
                 34444444444444444444444444444444444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0001
      GOLD_2  32 GfGvyfewteatskavsvkvsesddeedeeeeeeeekveeedvekgsvkaakprldeivp 91 
                  fG+ ++  + +  +     ses+ +++++++ e    + e+ e+++++aa++r+ e++ 
  CDO71657.1 158 EFGLTYDLDNNPDMDHLYSDSESESDTHTDSDSE---YSLEKQERAQRNAARARTRELIF 214
                 6999999998888888777788888877777776...67788899999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3952.99
//
Query:       CDO71658.1  [L=1065]
Description: hypothetical protein BN946_scf184915.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-120  402.8   0.0   1.5e-120  402.4   0.0    1.2  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
       0.13   12.6   0.2       0.22   11.9   0.2    1.2  1  MSA_2     Merozoite Surface Antigen 2 (MSA-2) family


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.4   0.0  1.6e-124  1.5e-120       1     324 []      16     346 ..      16     346 .. 0.95

  Alignments for each domain:
  == domain 1  score: 402.4 bits;  conditional E-value: 1.6e-124
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaP........ereytde..kkgervysem 89 
                 F+n++++l+++Dslp  +++wk  e++v+g+++++++++mke++++w r+p+evi +llgnp+f++++++aP        +r+++++  +++er+++em
  CDO71658.1  16 FTNNRSFLQKVDSLPGPKASWKLIEITVTGNQKDADGQFMKERLDCWARNPVEVIGDLLGNPEFKNDITFAPyiqeleelQRQLENAtdAEKERIFEEM 114
                 99**********************************************************************888888886666655434569****** PP

     Plavaka  90 mtgdwaweqq..ieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHac 186
                  +++w+ ++q  ++  +  +at++pvil++DKT+ls+f+g+k+a+PvYl+iGni+k+vrr++sr+av ll+yLp++kl ++  +++ r++  ++lfH +
  CDO71658.1 115 ASAEWWRKIQeaLS-AQVPHATVAPVILATDKTQLSTFSGDKQAWPVYLTIGNINKDVRRQPSRRAVSLLGYLPVSKLLCF--RESDRSVEGYRLFHFA 210
                 **********6544.33339*************************************************************..78888889******** PP

     Plavaka 187 larilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl.eeselrtreetlelleeaadelkklwkeyglk 284
                 +++il+pL eagk+gv+m+cadg vr v+p+laayiaD+pEq+l++c ++++Cp+c ++++++g+l e++ lr+  +tl++l++ +   +++++++gl+
  CDO71658.1 211 MSQILAPLVEAGKSGVEMNCADGSVRLVFPLLAAYIADHPEQCLICCNKENRCPTCLVDRDRRGELlETCYLRDPLKTLAALQDPS---SDAFSAQGLR 306
                 *****************************************************************88999***********99995...69******** PP

     Plavaka 285 gviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 ++ +pFw++lp+a+i+++++pDlLHql+kgvf +HlvkWv
  CDO71658.1 307 DIPTPFWAELPYANIFNCIAPDLLHQLHKGVFMNHLVKWV 346
                 ***************************************8 PP

>> MSA_2  Merozoite Surface Antigen 2 (MSA-2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.5e-05      0.22       8      87 ..     961    1038 ..     955    1048 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MSA_2    8 ndaeaststssensnhkaaetntkgesevqspnqanketqknsnvqqdsdtksevsekqdadtksteaqpeqaensapta 87  
                  n +e++ s+ s n n  +a+  +++e+ + +p+ +++ t++     +d   k ++   q+  +   e+ pe+a+ns p  
  CDO71658.1  961 NLTESHRSSMS-NVNMVNANRGPASEADSIRPPSTATLTNDD-ALWDDIVKKQKIMALQQSTAMVVEKAPEHADNSVPGY 1038
                  66788888777.9*********************99988665.57789999999***********************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 7011.44
//
Query:       CDO71659.1  [L=169]
Description: hypothetical protein BN946_scf184915.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   15.1   5.4      0.027   14.7   5.4    1.2  1  FRG2      Facioscapulohumeral muscular dystrophy candidate 2


Domain annotation for each model (and alignments):
>> FRG2  Facioscapulohumeral muscular dystrophy candidate 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   5.4   1.5e-06     0.027      21      92 ..      57     126 ..      50     159 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-06
        FRG2  21 ssisgsesEsssskessRkRkisSrdsscqgtGasladersvtlekkkrkasdegrssesqetad.arerrae 92 
                 s+ sgs  E ss   s R+R+ sS+  s + tG     +rs   +kk+ ++ d++ + e +e+ + ++ r + 
  CDO71659.1  57 STGSGSVGEGSSTAGSLRHRTPSSKV-SSDMTGGAG--DRSYGYNKKRSSTMDDEDEPEENENDEdNTARLSD 126
                 44689999*****************9.777787766..79999999999997776665554444303333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1287.61
//
Query:       CDO71660.1  [L=473]
Description: hypothetical protein BN946_scf184915.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3445.64
//
Query:       CDO71661.1  [L=702]
Description: hypothetical protein BN946_scf184915.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-07   31.0   0.0    2.3e-07   30.3   0.0    1.3  1  SH3_1         SH3 domain
    2.5e-06   27.2   0.0    4.9e-06   26.3   0.0    1.4  1  SH3_9         Variant SH3 domain
     0.0015   18.2   0.0     0.0045   16.6   0.0    1.8  2  SH3_2         Variant SH3 domain
  ------ inclusion threshold ------
       0.18   10.6   0.0       0.27   10.0   0.0    1.1  1  Amnionless    Amnionless
       0.36   10.6   3.9       0.62    9.9   3.9    1.3  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   6.3e-11   2.3e-07       5      47 ..     606     648 ..     605     649 .. 0.98

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 6.3e-11
                 SBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   5 DYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 ++ ++++dE+  ++G+ + +l++ +dgW  +++ +tg +GliP
  CDO71661.1 606 PFVPTMDDEIAVRPGEDVRILKRFDDGWAYAENATTGAQGLIP 648
                 699***************************************9 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.4e-09   4.9e-06       4      47 ..     606     651 ..     605     653 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.4e-09
       SH3_9   4 pyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPany 47 
                 p++p+ dde+ +++G+ ++++++ +dgW ++++  tG  Gl P  +
  CDO71661.1 606 PFVPTMDDEIAVRPGEDVRILKRFDDGWAYAENatTGAQGLIPIDC 651
                 8*******************************999********766 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.76   2.7e+03      29      47 ..     352     371 ..     325     372 .. 0.68
   2 !   16.6   0.0   1.3e-06    0.0045       6      57 .]     605     655 ..     603     655 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.76
                 .EEEECTTE.EEEEECCCEE CS
       SH3_2  29 lgskdsdgw.wegevgGrvG 47 
                 l+ +++++w  +g++++ vG
  CDO71661.1 352 LRLRRRRNWfAAGSYNRGVG 371
                 55567889999999977777 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.3e-06
                 S-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEEE CS
       SH3_2   6 edyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslveeq 57 
                 + +v++  +e+  + G+ +++l   ++ +dgw ++e+   G +Gl+P+++++++
  CDO71661.1 605 RPFVPTMDDEIAVRPGEDVRIL---KRFDDGWAYAENatTGAQGLIPIDCLRPV 655
                 56899999**************...99999*****99999***********985 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   7.5e-05      0.27     330     382 ..     303     356 ..     274     384 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.5e-05
  Amnionless 330 sgasssdssaagapgesaglvlgivfgl.vlllllllillllllrrkgv.lrlpq 382
                 +  +s+ s+ a  +g++ gl +gi++++ v+++ll+l+ l++  r++ v lrl++
  CDO71661.1 303 NADPSHPSR-ANDDGSHHGLSAGIIAAIsVIIALLFLLFLMFCCRKRAVaLRLRR 356
                 222223333.448899999*******99866666666666666666666446665 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.9   0.00017      0.62       7      32 ..     324     348 ..     321     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
  Adeno_E3_CR2   7 aIivaVvvGlaiIiicmlyYaCcYrk 32 
                   +Ii+a+ v +a++++ +l++ Cc+++
    CDO71661.1 324 GIIAAISVIIALLFLLFLMF-CCRKR 348
                   79999999999999999888.77776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 4236.99
//
Query:       CDO71662.1  [L=379]
Description: hypothetical protein BN946_scf184915.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   13.9   0.0       0.65    9.4   0.0    2.1  2  Nop        snoRNA binding domain, fibrillarin


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0    0.0058     1e+02     106     143 ..      24      56 ..       6      61 .. 0.82
   2 ?    9.4   0.0   3.6e-05      0.65       7      54 ..     189     236 ..     184     267 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0058
                 HHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHH CS
         Nop 106 leYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLa 143
                  ++l+s +++ AP ls     + aa +i+++G++++La
  CDO71662.1  24 DTFLSSLVRFDAPALS-----SFAAAFIQVTGSVRRLA 56 
                 5677777777777776.....579***********998 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HH CS
         Nop   7 keintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekk 54 
                 +e+ +lh+ v+++Y+    +L+ + ++n++Y+ +  l+++e + ++k+
  CDO71662.1 189 DELLRLHQAVKQQYNDALRDLAPIYQHNIDYLAANTLLRSELMLIDKS 236
                 68889***************************9999998777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2645.42
//
Query:       CDO71663.1  [L=725]
Description: hypothetical protein BN946_scf184915.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-18   65.4   0.3    5.2e-18   64.6   0.3    1.4  1  FYRN      F/Y-rich N-terminus
    6.4e-16   58.3   0.0    1.2e-15   57.4   0.0    1.5  1  FYRC      F/Y rich C-terminus
  ------ inclusion threshold ------
       0.15   12.7   0.3       0.31   11.7   0.3    1.5  1  DUF573    Protein of unknown function, DUF573


Domain annotation for each model (and alignments):
>> FYRN  F/Y-rich N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.3   8.7e-22   5.2e-18       1      51 []     346     395 ..     346     395 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 8.7e-22
        FYRN   1 gsltvlslGelvpdspkfhteryIyPvGYkstRlYwstkdprkrclYtceI 51 
                 g +tv++lGe+  ++ +fhteryI+PvGY++tR+Y st d++  ++Y+c+I
  CDO71663.1 346 GIMTVHNLGEVCMRE-HFHTERYIFPVGYEVTRRYLSTIDANAEVVYHCTI 395
                 569*********999.9*********************************9 PP

>> FYRC  F/Y rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0     2e-19   1.2e-15       1      80 [.     401     477 ..     401     481 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2e-19
        FYRC   1 gPlFrvtveedpdlsfeassatevWqkvlervqelrkeaglklklfpesisGeemfGLsepaivrlieslpgaekctnY...k 80 
                 gP+F++t++++pd  ++a +at++W+ v+++ ++ r+ a+++      s+sG+++fGL +++i +li++lp a+++++Y   +
  CDO71663.1 401 GPKFQITASDMPDKPIVAGTATGAWSVVVRAANHIRNRAHSN------SVSGPDFFGLGQNTIKHLIQELPHANQLRDYvwqN 477
                 7***************************************97......*******************************5544 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.2e-05      0.31      40      73 ..      20      54 ..      16      67 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
      DUF573 40 ksslssdvsk.sqlseKlrrLkkkyrnavskikkg 73
                ++s s+++sk  ++++K+r+Lk+k+ +  +  ++g
  CDO71663.1 20 SQSASQQKSKePDFADKYRKLKRKFFELEELRSSG 54
                556666777769*************9977654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4598.83
//
Query:       CDO71664.1  [L=329]
Description: hypothetical protein BN946_scf184915.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-14   51.8   0.0    9.1e-14   51.4   0.0    1.1  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   5.1e-18   9.1e-14       1     154 [.       2     165 ..       2     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 5.1e-18
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS.....SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEEC..... CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy.....keeahfleaAeaglgetlallaalarkngiavviglierel..... 87 
                   r+AvvQ ++k  + ++n+ ++++l+a+   + +dL++lPE+  tgy     ++ a +le      g+t +++a la++  ++v +g++er       
    CDO71664.1   2 RIAVVQFAPKIGQVQENIRTAEALCARLRPNTVDLVCLPEMIFTGYvfpdaQSIAPYLED--PRTGPTSHFCASLAARLRCYVLAGYPERLPpheve 96 
                   79*************************9999***************76665555555553..569*************************66***** PP

                   .........CTTEEEEEEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEE..TTEEEEEEEGG CS
  CN_hydrolase  88 .........tngklqayntavlldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdt..pvgkiGaaiCy 154
                            t  ++   n+a+l  + g+ +g yrK++L          +  +  +pg+g++ fd+  p+g +++ iC 
    CDO71664.1  97 palqlpdgrTAERI-GANAAILCGPRGERLGGYRKTNLY--------DTDMTWAKPGTGFQTFDLppPLGPLSVGICM 165
                   ******99988888.78********************98........3444455556666666431145566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2305.24
//
Query:       CDO71665.1  [L=223]
Description: Carbohydrate-Binding Module Family 48 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   67.0   0.0    2.3e-18   66.2   0.0    1.4  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.3e-22   2.3e-18       2      81 ..      68     151 ..      67     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.3e-22
   AMPK1_CBM   2 ptvikWkggGkkVyv.tGsfnnWkkkipLk..ksekdfsvilkLpeGthqykFiVDgewrvdpdlptat.deeGnlnNvievke 81 
                 +++i W+g+GkkV++     +nW+ ++p++   ++++f +i+ L +Gth++kFiVD+++r ++d p a  d +G+l N++ v++
  CDO71665.1  68 NCKIVWRGKGKKVFLiRAGHDNWQGRQPMEydPQSETFWTIVPLLPGTHHFKFIVDDQIRLNNDYPRAVdDRDGTLANYVAVTA 151
                 689**********96256689*********987889*****************************98764789*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.35s 00:00:00.96 Elapsed: 00:00:00.58
# Mc/sec: 1160.68
//
Query:       CDO71666.1  [L=383]
Description: hypothetical protein BN946_scf184915.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   13.2   0.0       0.22   11.6   0.0    1.7  2  TetR_C_12  Bacterial transcriptional repressor C-terminal
      0.081   12.4   0.0          1    8.8   0.0    2.0  2  Nop        snoRNA binding domain, fibrillarin


Domain annotation for each model (and alignments):
>> TetR_C_12  Bacterial transcriptional repressor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   1.1e+04      36      51 ..      64      79 ..      53      81 .. 0.81
   2 ?   11.6   0.0   2.5e-05      0.22      21      69 ..     170     218 ..     162     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
                HHHHHHHHHHHHHHHH CS
   TetR_C_12 36 elieetltvLfrqger 51
                + i+ tl++Lf  g +
  CDO71666.1 64 PEIDLTLSRLFGDGVT 79
                6789999999988865 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.5e-05
                 HHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHCHHHHHCCTT---SS-HH CS
   TetR_C_12  21 fveAmllarrrpdlrelieetltvLfrqgeralvrtlertgWklraaid 69 
                 +++A+++a   p+l+ ++++ l +L+++ ++ + + l++     +++id
  CDO71666.1 170 LATAVVVAAESPELKRAVTDELLRLHQAVKQQYNDALRDLAPIYQQNID 218
                 689******************************9999987666666555 PP

>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.022     2e+02     118     143 ..      36      56 ..      14      61 .. 0.77
   2 ?    8.8   0.0   0.00011         1       5      54 ..     187     236 ..     183     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.022
                 HHHHHHCHHHHHHHHHHHHSSHHHHH CS
         Nop 118 PNlsaLvGeevaarLishaGgLtnLa 143
                 P ls     + aa +i+++G++++La
  CDO71666.1  36 PALS-----SFAAAFIQVTGSVRRLA 56 
                 5554.....579999*******9998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HH CS
         Nop   5 idkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekk 54 
                 + +e+ +lh+ v+++Y+    +L+ + ++n++Y+    l+++e + ++k+
  CDO71666.1 187 VTDELLRLHQAVKQQYNDALRDLAPIYQQNIDYLASDTLLRSELMLIDKS 236
                 6789999**************************98887777666666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 2156.34
//
Query:       CDO71667.1  [L=986]
Description: hypothetical protein BN946_scf184915.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-27   93.9   0.1    1.2e-26   93.0   0.1    1.6  1  BHD_3           Rad4 beta-hairpin domain 3
    5.1e-25   87.9   0.0    1.6e-24   86.2   0.0    1.9  1  Rad4            Rad4 transglutaminase-like domain
    1.3e-19   70.9   0.4    1.3e-19   70.9   0.4    4.1  4  BHD_2           Rad4 beta-hairpin domain 2
    5.2e-19   67.8   0.0    1.1e-18   66.8   0.0    1.6  1  BHD_1           Rad4 beta-hairpin domain 1
    4.7e-08   33.5   0.0    4.4e-06   27.1   0.0    2.7  2  Transglut_core  Transglutaminase-like superfamily
  ------ inclusion threshold ------
        3.8    8.6   6.1        8.7    7.5   0.8    3.7  3  TPR_14          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.1   3.9e-30   1.2e-26       1      75 [.     685     757 ..     685     758 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 3.9e-30
                 ----TTS-EE-SSGGGS-TTEEEEE-TTHHHHHHHCT---EEEEEEEEE-SS-EE..EEEEEEEEEGGGHHHHHH CS
       BHD_3   1 vPkNeygnieifkpsmlPegavhislkgaakaakklgidyapAvvGFefkgrrgkgiPvidGivVaeedeeavle 75 
                 vPkN++gni++++psmlP+ga+h++ kg+ak+a++lg dya+Av+ Fefk+rr+   Pvi+G+vVa+e+e+a+ e
  CDO71667.1 685 VPKNDFGNIDLYVPSMLPAGAAHVPFKGTAKIARQLGFDYAEAVTCFEFKKRRAF--PVISGVVVAAENEAALIE 757
                 8*************************************************66555..***************987 PP

>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   5.4e-28   1.6e-24      11     146 ..     371     515 ..     358     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 5.4e-28
                 -BSS---......--TTHHHHHTTS-SEEEEEEETTTTEEEEEESSSS-EE..............SS--TTS--TGGGS----EEEEE-TTS-EEE-HH CS
        Rad4  11 lksdkskkketkkkkkrlkdkdlpypvyWvEvfspekkkwisvdplvgsti..............ekkeileplaekakqvlsYVvAfdsdgsakDVTr 95 
                  ++  +++ ++++ ++r  d  +  pv+W+Evfs  + +w++vdp+   ++               + + +  +    ++ + YV+Af++dg+a+DVT+
  CDO71667.1 371 GQKLGTSEDQRPRPRERTPDPTTTAPVFWTEVFSRPDGRWLPVDPIR-VIVnrrkafdptpnpndPNARPDRRRPVRVENRMVYVLAFEEDGYARDVTP 468
                 444444466789999999****************************5.67767777777765543333333333888999******************* PP

                 HH-T.TCCCCHGGGSGGGSHHHHHHHHHHHHHH--S---H..HHHHHHHHH CS
        Rad4  96 RYlsdysnsktkklrvekskeekkWfesvlrplekrnkertevdalEdael 146
                 RY+++ + +k++k+     k   +W+e++lr  +++ + +  +d+lEd+el
  CDO71667.1 469 RYARE-YGAKVSKMQQG-GKGRREWWERILRMVQRPYRLQ--RDDLEDEEL 515
                 ****9.99999999999.677789****************..********9 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.1   3.2e+03      30      45 ..     205     219 ..     183     227 .. 0.52
   2 ?   -0.7   0.2      0.98   2.9e+03      28      49 ..     285     318 ..     273     322 .. 0.52
   3 !   70.9   0.4   4.3e-23   1.3e-19       1      64 []     573     678 ..     573     678 .. 0.96
   4 ?   -3.4   3.6         6   1.8e+04      10      40 ..     769     809 ..     762     929 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
       BHD_2  30 arkkredekkeeeeee 45 
                 +++++ed ++ +e++e
  CDO71667.1 205 KARAVEDSDD-DEDDE 219
                 2222222222.22222 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.98
       BHD_2  28 ktarkkredekk............eeeeeeeege 49 
                 +t++k+r++e++            e +++++ +e
  CDO71667.1 285 STKKKARAKEENgnatgkgkakaiEVDDDDDMEE 318
                 3333333333333344555577774455455444 PP

  == domain 3  score: 70.9 bits;  conditional E-value: 4.3e-23
       BHD_2   1 rSaerWyrlGReVkpgelPvKrvksraktarkkredekk..........................................eeeeeeeegevpLYgewQ 57 
                 ++ae+W+r+GR+V++g +P+K+vk+ra+t +kkr+ e++                                          +    ee  +++LY+++Q
  CDO71667.1 573 KTAENWMRQGRKVREGAQPLKWVKQRAVTVNKKRAIEMAladqreraasasgsaaktpsagdrregelslswdagggdtpgGGFASEEGVMQGLYAKHQ 671
                 89***********************************************************999999999999999999998888899*********** PP

       BHD_2  58 TelYvpP 64 
                 TelY+pP
  CDO71667.1 672 TELYKPP 678
                 ******9 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 6
       BHD_2  10 GReVkpgelPvKrvksraktarkkredekk..........e 40 
                  R+ k +e+ +Kr  + ++  r++++ +++          +
  CDO71667.1 769 KRQAKRQEQVIKRWTKLIQGLRIRQRLQEQyadragtpveN 809
                 57888888888888885544444444333333334455440 PP

>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   3.7e-22   1.1e-18       2      51 .]     522     569 ..     521     569 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3.7e-22
       BHD_1   2 epmPenlqdfKnhplYvLerhLkrnEvlhpdakpvgvfkkkepVYrRsdV 51 
                 e mP++++ fKnhplYvLerhLkr+Ev+ p + ++g f+ +epVY+R +V
  CDO71667.1 522 EAMPTSMAGFKNHPLYVLERHLKREEVVDPPT-ELGRFR-GEPVYPRANV 569
                 89******************************.*****7.*******998 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.5e-09   4.4e-06      42      83 ..     231     275 ..     202     323 .. 0.80
   2 ?    3.4   0.0     0.035     1e+02      95     112 .]     397     415 ..     356     415 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.5e-09
  Transglut_core  42 daeavle...tgkGncedfaslfvallRalGipaRvvtgylsgee 83 
                     +a ++++    ++G     a+lf+al+RalGipaR+v+ ++s ++
      CDO71667.1 231 SAKSLMKhalMRRGSRDTSAQLFTALCRALGIPARLVVSLQSVPW 275
                     4455555444799************************99988554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.035
  Transglut_core  95 Hawvevyl.egygWvplDp 112
                       w+ev+  ++++W+p+Dp
      CDO71667.1 397 VFWTEVFSrPDGRWLPVDP 415
                     57****9989999*****9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.35   1.1e+03       6      29 ..     235     258 ..     230     267 .. 0.84
   2 ?    7.5   0.8    0.0029       8.7       5      28 ..     753     776 ..     749     783 .. 0.89
   3 ?   -1.1   0.1       1.7     5e+03       6      29 ..     944     969 ..     939     976 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.35
      TPR_14   6 alaeallalGdpdeAiallrrala 29 
                 ++ +al+++G  d++++l+ ++++
  CDO71667.1 235 LMKHALMRRGSRDTSAQLFTALCR 258
                 56789*************999876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0029
      TPR_14   5 lalaeallalGdpdeAiallrral 28 
                 +al ea++++++++eA + ++r  
  CDO71667.1 753 AALIEAYWEAEQHAEAKRQAKRQE 776
                 799****************99975 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.7
      TPR_14   6 ala.eallalGdpdeAiallrra.la 29 
                 +la ea +++G+ d ++++ +++ la
  CDO71667.1 944 ELAeEAARRAGNGDSSANAVEELpLA 969
                 55525788999999999888877555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:00.53
# Mc/sec: 5626.86
//
Query:       CDO71668.1  [L=451]
Description: hypothetical protein BN946_scf184915.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-70  237.0   0.3    1.5e-64  218.1   0.0    2.6  3  GCD14            tRNA methyltransferase complex GCD14 subunit
    6.7e-06   26.0   0.0    1.1e-05   25.2   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    5.2e-05   23.1   0.0    8.6e-05   22.4   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0014   19.6   0.1     0.0032   18.5   0.1    1.6  1  Methyltransf_24  Methyltransferase domain
     0.0021   18.7   0.0     0.0051   17.5   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
     0.0049   16.7   0.0      0.011   15.6   0.0    1.6  1  GCD14_N          tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.019   14.1   0.0      0.029   13.5   0.0    1.2  1  Fibrillarin      Fibrillarin
      0.026   14.0   0.0      0.045   13.2   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
       0.11   11.8   0.0       0.17   11.2   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.13   12.1   0.0       0.34   10.7   0.0    1.7  2  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.6   8.3e+03     226     245 ..       5      23 ..       3      24 .. 0.76
   2 !  218.1   0.0   8.1e-68   1.5e-64       1     136 [.     225     358 ..     225     364 .. 0.97
   3 !   17.2   0.0   1.8e-06    0.0032     209     246 ..     362     399 ..     358     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.6
       GCD14 226 evllkPvselkghtgyLtfa 245
                 ++l +P +   +ht++++f+
  CDO71668.1   5 RLLGRP-EARPAHTSWILFS 23 
                 566777.67789*****996 PP

  == domain 2  score: 218.1 bits;  conditional E-value: 8.1e-68
       GCD14   1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthr 99 
                 gf+++l+ptPeLWtlaLphrtqily aDi++++  L++ pGs+v+e+GtGsgs+sh++artv+P Ghl+++efhe+ra+kareef +h+++++vt+thr
  CDO71668.1 225 GFIHLLRPTPELWTLALPHRTQILYLADIAFVTSCLNISPGSKVIEAGTGSGSFSHSVARTVGPDGHLWSYEFHEARANKAREEFARHGVEDIVTLTHR 323
                 8************************************************************************************************** PP

       GCD14 100 DvckeGfdeevsgkvDavfLDlPaPweaiphaakalk 136
                 +vckeGf   v ++vDavfLDlPaPwea++ha+kal 
  CDO71668.1 324 NVCKEGF--TVADTVDAVFLDLPAPWEAVEHAKKALP 358
                 *******..999**********************984 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.8e-06
       GCD14 209 kaskdakvedkssksstevllkPvselkghtgyLtfat 246
                 ++++++++e++++   + +l+k + e++ght+yLtfa+
  CDO71668.1 362 EQEQEQEQEQQDAAPAKITLSKAFPEVRGHTSYLTFAV 399
                 4456667777777778999******************7 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.4e-09   1.1e-05       2      82 ..     263     343 ..     262     380 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.4e-09
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsne 82 
                      + g +v+++G+G+G +++  a+++gp++++ + ++ e   ++Are+ +++g++  v++ + ++ +   +++ +++D ++ + 
       CDO71668.1 263 SPGSKVIEAGTGSGSFSHSVARTVGPDGHLWSYEFHEARANKAREEFARHGVEdIVTLTHRNVCKEGFTVA-DTVDAVFLDL 343
                      56789***********************************************9778888888877553355.6777777764 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.8e-08   8.6e-05      62     128 ..     253     319 ..     243     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.8e-08
                 HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEE CS
        PCMT  62 valalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenviv 128
                 +a+++  l++++g++v+e G+GsG  +  +ar vg++g++ s e  +  +++a+++  ++++e++++
  CDO71668.1 253 IAFVTSCLNISPGSKVIEAGTGSGSFSHSVARTVGPDGHLWSYEFHEARANKAREEFARHGVEDIVT 319
                 589999*******************************************************996643 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.8e-06    0.0032       1      87 [.     269     353 ..     269     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.8e-06
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavled 87 
                      +E G+ sG  +  ++r++   g+  l + + +++ a++a++ ++++g++d+v+l + +  ++  ++a +++D +f+D ++  eav ++
       CDO71668.1 269 IEAGTGSGSFSHSVARTVGPDGH--LWSYEFHEArANKAREEFARHGVEDIVTLTHRNVCKEGFTVA-DTVDAVFLDLPAPWEAVEHA 353
                      699**************999985..888887665577788888889*************99999999.99*********988888764 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-06    0.0051       1      70 [.     268     341 ..     268     358 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-06
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSS.STTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpf.edgsfDlvvs 70 
                      v+++G+G+G ++  +a+ +g +++++  ++ e+  ++are+++++g+   v++ + ++ +  f  ++++D+v++
       CDO71668.1 268 VIEAGTGSGSFSHSVARTVGpDGHLWSYEFHEARANKAREEFARHGVedIVTLTHRNVCKEGFtVADTVDAVFL 341
                      789****************66*************************9988999999996655433459999997 PP

>> GCD14_N  tRNA methyltransferase complex GCD14 subunit N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.1e-06     0.011      22      49 ..     189     216 ..     171     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.1e-06
     GCD14_N  22 itLepGgefhthrGaieHDdlIGrpeGs 49 
                 ++ +pG++  ++ G+ +HDdlIG p Gs
  CDO71668.1 189 LVITPGKDLNSKYGYYRHDDLIGIPYGS 216
                 6789*******************99997 PP

>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.029      65     154 ..     259     349 ..     243     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                  --S--TTSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSH.HHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHH CS
  Fibrillarin  65 elpikkgskvLYlGaasGttvsHvsDivgeegvvyavefsp.rvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqa 154
                   l i++gskv+  G++sG+    v+  vg++g +++ ef + r+ +   e a++    +  l   +  ++  ++ ++vD +f D+  p +a
   CDO71668.1 259 CLNISPGSKVIEAGTGSGSFSHSVARTVGPDGHLWSYEFHEaRANKAREEFARHGVEDIVTLTHRNVCKEGFTVADTVDAVFLDLPAPWEA 349
                  5789**************98888****************8724555555677665555555667777888888899999999999988665 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05     0.045       4      92 ..     267     355 ..     264     368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
                     EEEEET-TTSHHHHHHHHH.STTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS.-TTSEEEEEEES-----SGGGGGG CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkk.nPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllell.edgslekifilFPDPwfKkrhhKr 92 
                      v+e G+G+G+f    A    Pd  +   E ++ + +k+ ++ ++++++ +  l +    v +e +   ++++ +f+  P Pw    h K+
      CDO71668.1 267 KVIEAGTGSGSFSHSVARTvGPDGHLWSYEFHEARANKAREEFARHGVEDIVTLTHRN--VCKEGFtVADTVDAVFLDLPAPWEAVEHAKK 355
                     589**************8737*****************************99888874..44444415679*****************998 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.2e-05      0.17      38     104 ..     255     321 ..     249     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.2e-05
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq 104
                      fv+ + +  +g+kv++  +G+g ++ +++++vg  g++   ++ e   + +++   ++g+ +i  l+
       CDO71668.1 255 FVTSCLNISPGSKVIEAGTGSGSFSHSVARTVGPDGHLWSYEFHEARANKAREEFARHGVEDIVTLT 321
                      89999******************************************************99875543 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.2   5.7e+03     108     135 ..     138     165 ..     136     186 .. 0.57
   2 ?   10.7   0.0   0.00019      0.34      21     102 ..     263     395 ..     246     402 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.2
  Methyltransf_23 108 llkpgGylllseplaslkedrllldwly 135
                       l+p ++ ll+ p   ++++++ +++ +
       CDO71668.1 138 ALSPPALSLLHLPQHAHHHESSKQKNMW 165
                      5677777777777766666666666422 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00019
  Methyltransf_23  21 raggrvLdiGcGtGillevl.rengf..svtgvDlspeaveiae................................................ka 63 
                       +g++v++ G+G+G+++ +  r+ g   ++  ++  ++  ++a+                                                ka
       CDO71668.1 263 SPGSKVIEAGTGSGSFSHSVaRTVGPdgHLWSYEFHEARANKAReefarhgvedivtlthrnvckegftvadtvdavfldlpapweavehakKA 356
                      56789***********999955556555555566655556677778899999999999999999999999999999999999999999998877 PP

  Methyltransf_23  64 kkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppell 102
                         + +q++eqe +++++ +  I+l+  +  v+ ++++l
       CDO71668.1 357 LPLEEEQEQEQEQEQQDAAPAKITLSKAFPEVRGHTSYL 395
                      777777777777777777777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2987.54
//
Query:       CDO71669.1  [L=318]
Description: hypothetical protein BN946_scf184915.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-09   38.3   0.0    2.5e-09   37.3   0.0    1.4  1  PAS_3     PAS fold
    8.4e-06   25.8   0.0    1.8e-05   24.7   0.0    1.5  1  PAS       PAS fold
    0.00034   20.7   0.0      0.003   17.7   0.0    2.1  2  PAS_11    PAS domain
     0.0022   18.2   0.0      0.033   14.4   0.0    2.2  2  PAS_9     PAS domain
  ------ inclusion threshold ------
      0.097   12.9   0.0       0.77   10.0   0.0    2.1  2  PAS_4     PAS fold


Domain annotation for each model (and alignments):
>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   6.9e-13   2.5e-09       2      62 ..      24      83 ..      23      84 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 6.9e-13
       PAS_3  2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkge.pyegeyRirrkd 62
                +y+se+v+++lGy+p+el+g+  s l lvhp++ ++v+e + + +++++ ++  + R+++kd
  CDO71669.1 24 VYCSESVYDLLGYEPHELIGT--SSLLLVHPDEFSEVKELHYTTISQDQaAVLAYLRMKHKD 83
                79*******************..**************************7789999****98 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.1e-09   1.8e-05      16      71 ..      14      71 ..       9      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.1e-09
                EEE..TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT- CS
         PAS 16 vvD..edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgee 71
                +vD  ed +++y++++  +llG+++ e++g s l l+h+++ +e++el  + ++q + 
  CDO71669.1 14 IVDftEDANWVYCSESVYDLLGYEPHELIGTSSLLLVHPDEFSEVKELHYTTISQDQA 71
                455559**************************************99999888888776 PP

>> PAS_11  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.3e-07     0.003      28      75 ..      34      81 ..      20      89 .. 0.85
   2 ?    0.4   0.0      0.19   6.9e+02      31      52 ..     228     249 ..     223     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.3e-07
      PAS_11 28 lglekeelvgrsiydLchpqdlstlkshlrevissngeatsslyRLrl 75
                lg+e +el+g+s   L+hp+++s++k+ +  +is+ ++a  ++ R++ 
  CDO71669.1 34 LGYEPHELIGTSSLLLVHPDEFSEVKELHYTTISQDQAAVLAYLRMKH 81
                699******************************555555555567765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
      PAS_11  31 ekeelvgrsiydLchpqdlstl 52 
                 e+   +grs++d++  +d   +
  CDO71669.1 228 ETTTCIGRSFFDFVARRDEDLV 249
                 566799********99996544 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.3e-06     0.033       7      52 ..      18      61 ..       9      89 .. 0.77
   2 ?    1.4   0.0       0.1   3.8e+02      10      51 ..     215     250 ..     208     284 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.3e-06
       PAS_9  7 dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlra 52
                + +d + +y++e++ +llGy p e++g+s   l+ +++e  e ++ 
  CDO71669.1 18 T-EDANWVYCSESVYDLLGYEPHELIGTSSLLLV-HPDEFSEVKEL 61
                3.777899*******************9988888.55555555444 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
       PAS_9  10 dgril.yaNeaalrllGyspeevlgksitdlfvtdpeanerlr 51 
                 +++i   aN+++l+ +       +g+s++d++  + ++++ +r
  CDO71669.1 215 NCTIMyCANDSLLETTT-----CIGRSFFDFV--ARRDEDLVR 250
                 56666668999999964.....8999999999..444444444 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00021      0.77      11      47 ..      12      54 ..       3      76 .. 0.72
   2 ?   -0.0   0.0      0.28     1e+03      31      49 ..     228     246 ..     214     254 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
       PAS_4 11 l.....dpdgrvlyaNaaaaelfgappeellGktla.ellpee 47
                +      +d +++y++++  +l+g++p+el+G +    ++p+e
  CDO71669.1 12 IgivdfTEDANWVYCSESVYDLLGYEPHELIGTSSLlLVHPDE 54
                33335589************************99884455554 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.28
       PAS_4  31 ppeellGktlaellpeeda 49 
                 +  +++G+++++++  +d 
  CDO71669.1 228 ETTTCIGRSFFDFVARRDE 246
                 6788999999998776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2214.40
//
Query:       CDO71670.1  [L=672]
Description: hypothetical protein BN946_scf184915.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-10   40.9   0.0    4.6e-09   36.6   0.0    2.7  3  Helicase_C    Helicase conserved C-terminal domain
     0.0087   16.8   1.2      0.016   15.9   0.2    2.1  2  RecQ_Zn_bind  RecQ zinc-binding


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.07   6.3e+02      35      63 ..       8      35 ..       1      47 [. 0.76
   2 !   36.6   0.0   5.2e-13   4.6e-09       4      97 ..     160     259 ..     157     284 .. 0.84
   3 ?   -3.7   0.0       1.6   1.5e+04      48      70 ..     533     555 ..     529     555 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.07
                HHHHT.TSTEEEESTTSTHHHHHHHHHHHH CS
  Helicase_C 35 llekk.gikvavlhgelpqnereeileqfn 63
                l  ++ g+ va+l++e+++++r  +l++  
  CDO71670.1  8 L--RElGVAVAALTSETSHQDRTYTLQDLS 35
                3..334899***************999986 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 5.2e-13
                 HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH......TTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   4 eallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn......kgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 +++ +l +++ + +  +++++t+ +++++ l+l +kg+++ ++h  l+ +  +++l+++        g +dv+ at + ++Gid  +v+++i+fdlp++
  CDO71670.1 160 QYIHNLHERRGRASSGIVYCRTRATCDELALFLGRKGLNAKPYHRGLSPSVLDKTLRAWAeggtgaPGGIDVVCATIAFGMGIDKADVRYIIHFDLPKS 258
                 5666666666666777***********9*******************************9555554466****************************88 PP

                 H CS
  Helicase_C  97 v 97 
                  
  CDO71670.1 259 F 259
                 5 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1.6
                 TTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C  48 gelpqnereeileqfnkgesdvL 70 
                  ++p++ r+e l++ +k  ++vL
  CDO71670.1 533 QKIPTDIRIECLTSLRKALHKVL 555
                 57899999999999999888876 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         2   1.8e+04      32      41 ..     176     185 ..     160     188 .. 0.67
   2 !   15.9   0.2   1.8e-06     0.016      39      66 .]     296     331 ..     262     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
  RecQ_Zn_bind  32 laycentteC 41 
                   + yc ++ +C
    CDO71670.1 176 IVYCRTRATC 185
                   5577777777 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.8e-06
  RecQ_Zn_bind  39 teCrrkllleyFgeeaaee.......eCgn.CDnCl 66 
                    + +  l+++yFge+++ +       +C++ CD+C+
    CDO71670.1 296 ADSLSALICRYFGEKVDLRdpeatklYCNKmCDVCK 331
                   4567899*******988778999999**666****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4689.90
//
Query:       CDO71671.1  [L=405]
Description: hypothetical protein BN946_scf184915.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-16   60.8   0.0    1.9e-11   44.4   0.0    2.2  2  HAD_2           Haloacid dehalogenase-like hydrolase
    1.3e-13   51.7   0.0    3.9e-13   50.2   0.0    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.7e-07   30.1   0.0    9.6e-07   28.8   0.0    1.7  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
       0.15   12.1   0.0       0.39   10.7   0.0    1.7  1  ADH_zinc_N      Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.1e-06     0.032       1      60 [.      14      71 ..      14      94 .. 0.66
   2 !   44.4   0.0   4.3e-15   1.9e-11      66     178 .]     195     308 ..     164     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.1e-06
       HAD_2  1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee 60
                ++FD+DgTl d+  ++ +a+ +++++ g    +   ++   g    + l ++++  +e+e
  CDO71671.1 14 VLFDMDGTLTDSIAAVEAAWGKVANDIGQ--DPAYVIAATHGKRAVDNLAQFKPHIKEHE 71
                79*********************987743..33344444445555555555555555444 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 4.3e-15
       HAD_2  66 lrkyneekkk..kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekk..KPdpeviekaleklklkkeeviyvGD 160
                 l+ ++ e     ++v++++gvk +++++   + + +++Ts+ r  +   ++++gi+   +v +t++d   k  KP+p++++ a ++l+++++++++++D
  CDO71671.1 195 LEAWQLEAAAvdRSVRILPGVKRVMDSI--PKGRYAVATSGARTYAYGCMTRVGIT-PPEVTITADDKRLKagKPAPDPFLLAAKELGFDPKRCVVFED 290
                 24444444434479**************..556779******************95.5577777777666667************************** PP

       HAD_2 161 sptDieaakkagikviav 178
                 sp++i a+ + g +viav
  CDO71671.1 291 SPSGIRAGVASGATVIAV 308
                 ****************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   8.7e-17   3.9e-13       2     210 .]      12     302 ..      11     302 .. 0.64

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 8.7e-17
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.........HHHHHHHHHETTTE........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx........................ RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.........sgaltgfatfigrg........................ 67 
                 ++v+fD+dGTLt++   ve ++ ++a ++++  +++    +gk+ v    +                                                
  CDO71671.1  12 DAVLFDMDGTLTDSIAAVEAAWGKVANDIGQDPAYVIAATHGKRAVDNLAQFkphikehemDR-----------Evqafeesilyfadaynkhgpgslq 99 
                 79***********************66666666666444444444444444433233222211...........0212222223334422222233444 PP

                 .....................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH.......................................... CS
                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
   Hydrolase  68 .....................ayaigkpewltaldippdlgaaigsaqsqgrtvall.......................................... 103
                                                                                                                    
  CDO71671.1 100 nspvnsgattpalspssstpaS----------------------------------Rtssrassfvgtlaqltpfrrpsflhrvssllsmsptiregds 164
                 4444444444444455555550..................................2444445555555555555555555555555555555555555 PP

                 ...............................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGE.SEEEEHHCES CS
                 ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
   Hydrolase 104 ...............................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyf.daviasdiet 170
                                                +a  l+  ++  + ++ p+++ ++ s+ +   + +++t++ ++ a  ++ ++G  +  +++i++d++ 
  CDO71671.1 165 aalenpiseegsdenmnvedwktmiqkkhqlEAWQLEAAAVDRSVRILPGVKRVMDSIPKG--RYAVATSGARTYAYGCMTRVG-ITPpEVTITADDKR 260
                 5555555555555555666666666665544444466666667888***********9944..47*******************.44458888888888 PP

                 ..STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 171 ..vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                    +kp p+ ++ a++eL+ +p+++++++D++ ++ a+ a g
  CDO71671.1 261 lkAGKPAPDPFLLAAKELGFDPKRCVVFEDSPSGIRAGVASG 302
                 99***********************************98865 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.1e-10   9.6e-07       2      73 ..     263     330 ..     262     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.1e-10
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     +gKP+p  +  a+++lg dp+++++  D+  + i+++ + G++ ++V t  +r +     +++++y++d+ +
      CDO71671.1 263 AGKPAPDPFLLAAKELGFDPKRCVVFEDS-PSGIRAGVASGATVIAVCTSHERSKIE---NCGAHYIVDNME 330
                     59***************************.9******************99888664...499*****9976 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.8e-05      0.39      11      43 ..     299     330 ..     294     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.8e-05
                 HHTT-EEEEEESSHHHHHHHHHTTESEEEETTT CS
  ADH_zinc_N  11 kalGaeviavdsseeklelakklGadevinyke 43 
                  a+Ga+viav+ s+e + + +  Ga++++++ e
  CDO71671.1 299 VASGATVIAVCTSHE-RSKIENCGAHYIVDNME 330
                 589***********9.69************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2838.89
//
Query:       CDO71672.1  [L=794]
Description: hypothetical protein BN946_scf184915.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-07   31.4   0.0      3e-07   30.7   0.0    1.3  1  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.7e-11     3e-07       2      73 ..     336     401 ..     335     402 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.7e-11
  Linker_histone   2 psykdMikeAIkalkerkGsSrqaIkkyikakykvvdvskfksllkkalkkgvekgelvqpkgkGasGsfKL 73 
                     psy++Mi+eA+ ++ +  G+    +  +++a y++  +++f+   ++al+k+ ++g l++       G+++L
      CDO71672.1 336 PSYEEMIVEALLDCGDSEGAAPKELFTWMAARYPL--QTNFRPSASQALQKAYKRGRLEKRP----GGKYRL 401
                     9*********************************8..89********************985....477776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 4762.94
//
Query:       CDO71673.1  [L=127]
Description: hypothetical protein BN946_scf184915.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-35  121.2   0.0    2.6e-35  121.1   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.0   1.4e-39   2.6e-35       7     120 ..      14     125 ..       8     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 1.4e-39
                    TSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG.HHHHHHHHHHHSSSSTS--EEEE CS
  Ribonuc_L-PSP   7 aaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied.faevnevyaeafdelkeaParsa 101
                    ++  Ysqav +g+++yvsG ++++ ++++lveg v++qtr+al+n+kavL+ ag+ l++v+kv+++l+++++ fa +nevy e+f+ +   Par++
     CDO71673.1  14 PLPVYSQAVISGKTIYVSGSIGIT-RDMQLVEGGVQAQTRAALNNMKAVLKGAGVGLESVLKVNIYLTNLQRdFAPMNEVYLEYFSSNP--PARTC 106
                    7778*******************9.7********************************************988***************5..***** PP

                    EE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 102 veVaaLpkgakvEIeaiav 120
                    ++VaaLp ga+vEIe+ia+
     CDO71673.1 107 IGVAALPLGAEVEIECIAE 125
                    *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 992.83
//
Query:       CDO71674.1  [L=281]
Description: hypothetical protein BN946_scf184915.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2001.87
//
Query:       CDO71675.1  [L=531]
Description: hypothetical protein BN946_scf184915.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-78  262.5   0.0    8.2e-78  262.2   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.2   0.0   4.6e-82   8.2e-78       1     442 [.      50     489 ..      50     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 262.2 bits;  conditional E-value: 4.6e-82
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkkl 98 
                 Ppgp+plplvgn+l +gr+e+ +  +++l  +yg+++ l l +++v +l++p av+evl k+++++s+rp+++l+     + +  g++ + + ++w+ +
  CDO71675.1  50 PPGPKPLPLVGNILDIGRWENQWTGYKRLCSQYGDMVYLSLLGRRVLILGSPHAVEEVLEKRSSNTSDRPYSPLIPL---TGNDAGLASMPYgQRWRDH 145
                 9***************************************************************************8...8999999999988****** PP

                 HHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHH CS
        p450  99 RrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpl 197
                 Rr + ++++      ++++  ++ +  v+ +  ++ +s   d++ ++ +++ +++ ++l++      +d++   ++k     ++ll  +   +l++fp+
  CDO71675.1 146 RRAFWQAFQPR----VVPTYRDVQRTSVRHFLHRVLSS-DEDLQGHIRYVFASTMLKVLYNLDAAEKDDSMIGLIDKSLTCSVDLL--TGGHILDFFPW 237
                 *********88....77777777777777777777777.47999******************988444444434444444555566..5678******* PP

                 HTCCSCHH.....HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCT.SSSSHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
        p450 198 lkylptkl.....lrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkge.sklsdeelaatvlellf.aGvdTtsstlswaLyeL 289
                 l+ylp++l     +r+l e+  +++ + +  + ++++ l+++ +   + l+ ll + +e + e +k + ee++++v+ + + +G+dT+ stl   ++ +
  CDO71675.1 238 LRYLPGWLpgagfQRTLSECKATVDATKEVPFVKMKAALSQN-DAVTSALAPLLAKAEEGQTEtAKGDYEEIVKNVGLIAIqGGSDTSFSTLLGLFLAM 335
                 *****9964444367778776666666666688999999999.344445555555443444447999*********98765499*************** PP

                 HHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGG CS
        p450 290 aknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRF 388
                   +Pevq+k + E+d v+g++r p+++d+++l y +avikE LR h+v+pl+lp+++  d +i+gy+ip Gt+vi+n++a+++d++ ++ P  F+peRF
  CDO71675.1 336 SLYPEVQSKAQAELDAVVGRHRLPDFEDRESLVYINAVIKECLRWHTVLPLSLPHRTVDDDEIGGYFIPGGTIVIPNTWAILHDEQAYDAPYAFKPERF 434
                 *************************************************************************************************** PP

                 B-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTS CS
        p450 389 ldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetd 442
                  +e +  ++ r++ a+ +FG G+R C G+++A   l+l +a++L+ F++  + +++
  CDO71675.1 435 IREGKldPFARDPAAY-AFGYGRRVCAGRHFADESLFLTIASVLHVFRINAPLDEQ 489
                 ***8899886666665.8******************************99754444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3777.90
//
Query:       CDO71676.1  [L=171]
Description: hypothetical protein BN946_scf184915.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0038   17.5   0.0      0.005   17.1   0.0    1.4  1  THOC7          Tho complex subunit 7
     0.0054   15.7   0.8     0.0067   15.4   0.8    1.1  1  CALCOCO1       Calcium binding and coiled-coil domain (CALCOC
  ------ inclusion threshold ------
      0.016   15.2   0.4      0.026   14.5   0.4    1.4  1  CHASE3         CHASE3 domain
       0.02   13.8   0.8      0.027   13.3   0.8    1.1  1  Spc7           Spc7 kinetochore protein
      0.024   14.5   0.4      0.093   12.6   0.4    1.7  2  Transcrip_act  Transcriptional activator
      0.039   14.2   0.7      0.064   13.5   0.7    1.3  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
      0.048   14.1   1.1       0.14   12.6   0.7    1.9  2  NPV_P10        Nucleopolyhedrovirus P10 protein
      0.073   12.1   0.2        0.1   11.6   0.2    1.1  1  Filo_VP35      Filoviridae VP35
      0.083   13.7   0.4       0.15   12.9   0.4    1.3  1  DUF3349        Protein of unknown function (DUF3349)
      0.095   12.8   0.1       0.16   12.1   0.1    1.4  1  DUF3736        Protein of unknown function (DUF3736)
       0.11   12.3   0.1       0.35   10.7   0.1    1.9  2  DASH_Dam1      DASH complex subunit Dam1
       0.14   12.2   0.9       0.23   11.5   0.9    1.4  1  DUF1664        Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.3e-06     0.005      37     100 ..      69     134 ..      13     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.3e-06
       THOC7  37 eleqlkedllldfaafelsierlqllakanerereryeaekeeie..seieavreeieelkaqLee 100
                 +   l e+ +l  aa++ s+e lq++++  +  ++r+ea +++++  se++a++e+i++ +a++++
  CDO71676.1  69 AAYHLLEEYKLASAALQASVEELQASTQKVTAHVRRIEAVEKDLKalSESSATKEDISRVRAEMKK 134
                 567889999*****************************9999887777888888888888877764 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.8   4.5e-06    0.0067      99     164 ..      73     137 ..      66     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.5e-06
    CALCOCO1  99 leekqkelerlseelaeeksalleakeesearirELEeDiktltqralekEteLeRlkerakkala 164
                 l e++k ++++ ++  ee +a +++  +++ ri  +E+D k+l++ + +kE ++ R++ ++kk+  
  CDO71676.1  73 LLEEYKLASAALQASVEELQASTQKVTAHVRRIEAVEKDLKALSESSATKE-DISRVRAEMKKLYD 137
                 5567888888889999999999999*************************9.89******999865 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   1.7e-05     0.026      40      80 ..      73     113 ..      69     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
      CHASE3  40 fLepyeqaraeiqealeelreltadnpeqqerldrlealie 80 
                 +Le+y+ a a++q+++eel++ t++  ++ +r++++e+  +
  CDO71676.1  73 LLEEYKLASAALQASVEELQASTQKVTAHVRRIEAVEKDLK 113
                 69*********************************998766 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   1.8e-05     0.027     227     294 ..      79     151 ..      66     165 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
        Spc7 227 eqleeleekieelkeqksel...eeeiaeaervlee..ckgwsesevsrlkeevkaleeltgwkivslsgstl 294
                    ++l++++eel+++ +++     +i++ e+ l++  + + +++++sr+++e+k+l + + ++++ l++ ++
  CDO71676.1  79 LASAALQASVEELQASTQKVtahVRRIEAVEKDLKAlsESSATKEDISRVRAEMKKLYDGLHVEFLDLRAHVW 151
                 3333444444444444444400044444444444441124557889999999999999999999999887665 PP

>> Transcrip_act  Transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   6.2e-05     0.093      62     106 ..      80     123 ..      69     132 .. 0.83
   2 ?   -0.2   0.0      0.54   8.1e+02      64     100 ..     126     162 ..     123     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
  Transcrip_act  62 rLaeireeLealadPlrkevavvrkkidavnrelkplgqscqkke 106
                      a ++  +e l+  ++k  a vr +i+av ++lk+l++s   ke
     CDO71676.1  80 ASAALQASVEELQASTQKVTAHVR-RIEAVEKDLKALSESSATKE 123
                    456778889999999999888887.8**************99998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.54
  Transcrip_act  64 aeireeLealadPlrkevavvrkkidavnrelkplgq 100
                    +++r e+  l d l+ e   +r ++  +  ++++l++
     CDO71676.1 126 SRVRAEMKKLYDGLHVEFLDLRAHVWGIQEDVHALSK 162
                    6789999999999999999999999999999888876 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   4.3e-05     0.064      39      97 ..      82     139 ..      69     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                   HHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  39 relqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                    +lq+ +eelqa   ++++++ ++ + ++d ++l  e+++ ke+++++ ae+k+l + l
    CDO71676.1  82 AALQASVEELQASTQKVTAHVRRIEAVEKDLKALS-ESSATKEDISRVRAEMKKLYDGL 139
                   57999********************9987777665.88999***********9998766 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   9.6e-05      0.14      22      56 ..      83     117 ..      78     137 .. 0.83
   2 ?   -1.3   0.0       2.1   3.1e+03       9      19 ..     153     163 ..     144     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.6e-05
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaelet 56 
                 alq++v+++q+  ++vt    +++a  + L++l++
  CDO71676.1  83 ALQASVEELQASTQKVTAHVRRIEAVEKDLKALSE 117
                 89999999999999999999999999999999987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
     NPV_P10   9 Iradikavddk 19 
                 I +d++a+++k
  CDO71676.1 153 IQEDVHALSKK 163
                 66667666665 PP

>> Filo_VP35  Filoviridae VP35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   6.9e-05       0.1      79     135 ..      84     140 ..      72     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
   Filo_VP35  79 vnrqiidiestlseletrvtelerqlheikpvldmaktlealskvlaemlakydllv 135
                 ++  + + +++  +++  v+ +e   +++k + + + t e +s+v aem   yd l 
  CDO71676.1  84 LQASVEELQASTQKVTAHVRRIEAVEKDLKALSESSATKEDISRVRAEMKKLYDGLH 140
                 45556666666777887777777777777************************9875 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   9.7e-05      0.15      33      88 ..      78     134 ..      67     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-05
                 T--HHHHHHHHHHHHHH--.SSS.BSHHH.CHHHHHHHCTS---HHHHHHHHHHHHT CS
     DUF3349  33 rLsdeevkevaeelvaeaaeadeavdeed.ieelitkvteeepseedvarVaarLaa 88 
                 +L  + +++ +eel a++++   +v +++ +e+ ++++ e+ +++ed++rV+a++++
  CDO71676.1  78 KLASAALQASVEELQASTQKVTAHVRRIEaVEKDLKALSESSATKEDISRVRAEMKK 134
                 588888999999999999877888887653788999*****************9875 PP

>> DUF3736  Protein of unknown function (DUF3736)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.16       7      60 ..     103     155 ..      91     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
     DUF3736   7 SrldleeqrrrearengsidesdeeeanaellkvmsgPpvlhLkldatvrkvaf 60 
                  r+   e++++++ e+ s + +d + ++ae++k  +g +v  L l+a v ++++
  CDO71676.1 103 RRIEAVEKDLKALSES-SATKEDISRVRAEMKKLYDGLHVEFLDLRAHVWGIQE 155
                 5778889999999999.*****************************99999876 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00023      0.35       2      36 ..      85     119 ..      84     121 .. 0.92
   2 ?   -2.2   0.0       2.4   3.6e+03      14      23 ..     145     154 ..     128     166 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
   DASH_Dam1   2 epafaeLaDsletLdknledLqqihesLsdfNeSF 36 
                 + + +eL+ s +++++++++++ ++++L+ ++eS 
  CDO71676.1  85 QASVEELQASTQKVTAHVRRIEAVEKDLKALSESS 119
                 67899****************************95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
   DASH_Dam1  14 tLdknledLq 23 
                 +L++++  +q
  CDO71676.1 145 DLRAHVWGIQ 154
                 4444444444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9   0.00016      0.23      44     122 ..      82     162 ..      72     164 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseige....dvesvkeavegleskleriee 122
                 + +  ++e++++s +++  h  +ri+ v+k l++ +e  +++ke++++vr +++++ +    ++  +++ v g+++ ++ +++
  CDO71676.1  82 AALQASVEELQASTQKVTAHV-RRIEAVEKDLKALSES-SATKEDISRVRAEMKKLYDglhvEFLDLRAHVWGIQEDVHALSK 162
                 455566666777766666664.6899999999888875.57999999999999886541111555677777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1279  (0.0713369); expected 358.6 (0.02)
Passed bias filter:                      832  (0.0464053); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1171.99
//
Query:       CDO71677.1  [L=266]
Description: hypothetical protein BN946_scf184915.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1844.14
//
Query:       CDO71678.1  [L=758]
Description: hypothetical protein BN946_scf184915.g22, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5118.59
//
Query:       CDO71679.1  [L=636]
Description: hypothetical protein BN946_scf184915.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-194  648.1   0.1   1.5e-194  647.9   0.1    1.0  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  647.9   0.1  8.6e-199  1.5e-194       1     585 [.      42     609 ..      42     611 .. 0.93

  Alignments for each domain:
  == domain 1  score: 647.9 bits;  conditional E-value: 8.6e-199
                      S-------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHC.THHHHHHHHHHHHHSSHT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-GCC CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpllseeelekteklveeflk.geGpkLqerLraekekktsknwledwWedyaYleyrdplvlnsnpfllledd 93 
                      LprLPvP++ +T+++yle+++p l++e++++t+++v +f +  +G++Lq+rL+a++ +++ knwl+dwW+++aY+ yrdp+v+ +++f+++ dd
       CDO71679.1  42 LPRLPVPTITSTAHKYLETVEPHLTREQFSRTQRAVLAFVTsVQGQELQKRLQARAADPSVKNWLADWWNETAYMAYRDPVVVFVSYFYVHVDD 135
                      9****************************************55*********7777777789***************************99999 PP

                      CCTSTCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--TSS---EEEEEETTEEEEEECECE CS
  Carn_acyltransf  94 pdpkeknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykkedkesrhivVlrkgqfYkvdvled 187
                      +    + +q+kraA+l+ ++l f+ l+++++lep+++ +g pl ms+y++lf+++R+P+k++D+++k+++  ++++h+v +rk++fYkv +  d
       CDO71679.1 136 WA---RPDQAKRAAQLLKAMLPFRYLVESKQLEPEKV-RGAPLAMSSYEWLFHSCRYPTKPADTAKKFDP--TKHNHVVFVRKNKFYKVALA-D 222
                      97...55555*************************87.49***************************987..359*****************.7 PP

                      CTTEE--HHHHHHHHHHHH.HHHHCCG.----GGGGGGS-HHHHHHHHHHHCC-TCHHHHHHHHHHCSS-EEEE----SS---HCCHHHHHHCT CS
  Carn_acyltransf 188 dggrllspaelekqleeIl.sdsekeesaeepvgvlTtenRdewakareellksekkNkeslelIesalfvvcLDdespededeeelakqllhg 280
                        gr ls+aele+q+++++ ++ ek   ++ p+g+l++enRd+w++ar++ll+++++N+++le Iesa++vvcLDd++p +++  e + q++ g
       CDO71679.1 223 ASGRDLSAAELEEQIKKVIaMAGEK---KAIPIGALSSENRDTWTDARAALLAASSANAAALEQIESAIMVVCLDDTKPVTRE--EASWQCWVG 311
                      888****************554433...58********************8877777*********************85555..5******** PP

                      TCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S----S-SSS....-EEE-----HHHHHHHHHHHHHHHHH CS
  Carn_acyltransf 281 sgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekneeksssseeslpepeklefkldeelkeaieeaetrldkl 374
                      +g+nR+fDK  qliv++nGk+g+ +EHs++Dgt++lr++e++l+++  + + +     + s+ +slp+pe l+f+ld ++++ i++ae+++d+l
       CDO71679.1 312 DGRNRFFDK-HQLIVFENGKSGFLGEHSCMDGTPTLRMNEFMLASL-AHGKVDLGPPLDPSAASSLPAPEALTFQLDARTRSYISAAESHFDAL 403
                      *********.9**********************************9.777777663334444444899************************** PP

                      HCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS---EEEEEE-TTSTT--EEEEE---HHHHHHHHHH.HSSCTHCCHHHHHH CS
  Carn_acyltransf 375 isdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygklaatyEsastrkFrhGRtEtirsvteeslafvkam.dskasdeeklellr 467
                      i+++d++vl+++eyGk++ik++++spDa++Q++ QlA+++++g++  +yEsa+tr+F+ GRtE+irs+++es+a+++am d k++de++ +l+r
       CDO71679.1 404 IAQHDMEVLHYEEYGKEYIKRHRVSPDAWAQLVKQLAFHKMFGRPGVCYESAQTRMFQLGRTEVIRSASNESKAWAEAMlDPKQTDEQRAALFR 497
                      *******************************************************************************6659999999***** PP

                      HHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT--HHSS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES--.SSTT-EEEEEEEETC.EEE CS
  Carn_acyltransf 468 kAvkahskltkeaakGkGvdrHLfaLkllakelesegeelpelFkdplykklnnwrLsTSqlsspalkgfGfgp.vvpdGyGigYiikddsisf 560
                      kAv++h +++  aa+G+GvdrHLf+Lk  +k    ege+lp+l++d++y++ ++w+LsTSqlssp+l+g+G+g+ vvpdGyG++Y+i+d+ i+ 
       CDO71679.1 498 KAVSRHMQYAAWAANGRGVDRHLFGLKKCLK----EGEPLPKLYEDEAYARTSHWELSTSQLSSPYLDGWGYGEaVVPDGYGLSYSIGDNYIRW 587
                      ***************************9888....789**********************************85389***************** PP

                      EEEETCTTS--HHHHHHHHHHHHHH CS
  Carn_acyltransf 561 visskkksetsserfaeaLeealed 585
                      +i+s+   ++++++++++L ea+++
       CDO71679.1 588 TITSR---KRRTAELKHYLAEAATE 609
                      ****6...579**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4079.63
//
Query:       CDO71680.1  [L=632]
Description: hypothetical protein BN946_scf184915.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-39  134.6   1.8    6.3e-39  133.9   1.8    1.3  1  PUL            PUL domain
    6.9e-24   84.4   0.0    1.1e-23   83.8   0.0    1.3  1  Peptidase_C97  PPPDE putative peptidase domain
    3.7e-15   55.8   0.0    8.6e-15   54.6   0.0    1.6  1  Thioredoxin    Thioredoxin
    1.3e-07   32.1   0.0    5.5e-07   30.0   0.0    2.0  1  Thioredoxin_2  Thioredoxin-like domain
     0.0021   17.5   0.0     0.0036   16.7   0.0    1.3  1  OST3_OST6      OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
      0.031   14.5   0.0       0.54   10.4   0.0    2.4  2  Thioredoxin_4  Thioredoxin
      0.038   13.8   0.0      0.087   12.6   0.0    1.5  1  TraF           F plasmid transfer operon protein
      0.054   13.7   0.0       0.15   12.3   0.0    1.8  1  Glutaredoxin   Glutaredoxin
      0.071   12.8   0.0       0.14   11.9   0.0    1.4  1  Redoxin        Redoxin
       0.59    8.3  10.0       0.93    7.6  10.0    1.2  1  SSP160         Special lobe-specific silk protein SSP160
        4.8    7.4  12.3        1.3    9.2   6.3    2.3  2  YqfQ           YqfQ-like protein


Domain annotation for each model (and alignments):
>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   1.8   3.9e-42   6.3e-39       4     275 ..     307     623 ..     306     628 .. 0.82

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 3.9e-42
         PUL   4 ktyllfkk.anldkllkKlkelNakllsa.g..qkdlalsd..........................eelatLeallaalessseatqlelllklltsW 72 
                 ++++lf++ + +d + +Kl ++ ++ +s+ +  ++ +al++                          +  + L++++a++            +++++ +
  CDO71680.1 307 THPILFTQaPSWDTVSAKLASFIDTAPSSpElqTAKQALTAavvpllkarfppsgsvmeaakkpalpAAAPLLNSWAATT------------RTIASVL 393
                 689*******************8887777665455666666777777777776666655533322222222444444444............99***** PP

         PUL  73 ppedrfPalDLlRlllldprvsayfaeeegg..ktissllslllssals.ssapkalenn.rmlalRllaNlFssplgrellls..kaeslletlesll 165
                 +p+++fP++D++Rl++ld  v++ +a++++   ++++ +l+++l+ + s ++++k++  n  +++lR+laN F+++++ + lls  +    +  l++++
  CDO71680.1 394 SPSQLFPLVDMWRLAVLDNGVANWLATSPNPdpDPLQLFLDKALEVSDStDPTQKSSGRNyLLTVLRTLANGFAHAALSKTLLSrtSPGGKRAPLTRVV 492
                 **************************999999*9999999998888887555557776777***********************8844567999999*9 PP

         PUL 166 tssllssnknlrialatlllNlavllhk..............sk.delseedqvellaallealeeeeedsEalyRlLvAlGtlvyaape.gealadla 248
                  s ll+++  +r+a+a++++N+a++l+k              +   e++ee++vel++a+lea+++e++++E+++Rl +Al  l+  +p  +++la+l+
  CDO71680.1 493 VSTLLHEDTAVRTAAASVVFNVAATLQKsriekvqgtapgavPIdVEEDEEWEVELVSAVLEAINNETQSEEVVHRLTAALAFLLRLSPFyESQLASLL 591
                 *9999*********************9999*9999988766522466**************************************99999********* PP

         PUL 249 rvldakeivkkakkk.......afekeprvkeva 275
                 +vl+ ke++k + +k          ++p v++++
  CDO71680.1 592 EVLQSKETLKGKLQKggcgengV--QKPEVRKLV 623
                 *************9877776431..333444444 PP

>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   6.6e-27   1.1e-23      66     148 ..       3      84 ..       1      87 [. 0.95

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 6.6e-27
                    TT-.S-SEEEEEEEE---HHHHHHHHHHHHTT--GGG-BTTTB-HHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHTT CS
  Peptidase_C97  66 segakpresieigeTevteeevraileelsseytgdkYnLiskNCnhFtdelvdfLtgkkiPewinrlarivlstptvklllp 148
                    ++g kp ++i++geT ++ee+++++l e++++yt+dkY+L++ NCn Ft++ ++fLtg++iP+wi +l++ +lstp++++l+p
     CDO71680.1   3 HHG-KPLHIIDMGETAIDEETFNEYLAEMRNHYTADKYHLLDFNCNSFTNDCIGFLTGGSIPSWIKDLPSDFLSTPFGAALRP 84 
                    455.99************************************************************************99887 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   5.3e-18   8.6e-15      11     101 ..     186     281 ..     177     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 5.3e-18
                  HHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.....TSEEEEEETT..TSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin  11 eeevakekklvlveFyApwCghCkalaPeleklaeelkd.....kvklakvdvd..enedlakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                  ++ +++ ++  +v F++p C++C++++P++e+la++ ++     +v ++kvd      +++a +++v+  Pt+++f +gk+ ++++ga+  ++l++ +
   CDO71680.1 186 HSLLQA-HRAAVVFFTSPTCPPCRMIEPVFEDLAHQKTHgigsgRVAFIKVDLAvgMGNQVAGEWGVRVTPTFLFFLDGKKLDELKGANA-AELRSQV 281
                  444555.9**************************9888889999********76225789****************************98.7777665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   3.4e-10   5.5e-07       3     102 ..     190     275 ..     188     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.4e-10
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfp.lkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarl 96 
                    + ++  +v+ft+p+Cp C+ ++ ++++l + +++      +++    ++++++ a             +++a ++gvr tPt ++fldgk ++++l
     CDO71680.1 190 QAHRAAVVFFTSPTCPPCRMIEPVFEDL-AHQKT----HgIGSG-RVAFIKVDLAVGMG---------NQVAGEWGVRVTPTfLFFLDGK-KLDEL 269
                    568889*********************9.33333....235555.67777777777665.........899***********777*****.999** PP

  Thioredoxin_2  97 pGyvpa 102
                    +G+  a
     CDO71680.1 270 KGANAA 275
                    **9644 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0036      32     107 ..     194     265 ..     171     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
   OST3_OST6  32 svvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfde..gkdvFqklglnsaPhlllfppkkg 107
                   vv++T+      C +Cr +ep fe +a + ++     s ++ F+kvd++   g +v  + g++  P +l+f   k+
  CDO71680.1 194 AAVVFFTSP----TCPPCRMIEPVFEDLAHQKTHG--IGSGRVAFIKVDLAVgmGNQVAGEWGVRVTPTFLFFLDGKK 265
                 468999988....6****************99999..479**********887799*****************87554 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00033      0.54      16      55 ..     195     237 ..     191     247 .. 0.79
   2 ?    1.3   0.0      0.21   3.4e+02     134     155 ..     247     270 ..     236     282 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00033
                    EEEEEE-TT-HHHHHHHHHHH...HHHHHHHHTTSEEEEEEE- CS
  Thioredoxin_4  16 tvieyedlrCphCakfeeeve...klleeyidtGkvkfiirdf 55 
                     v+ +++ +Cp C+  e   e     ++  i +G+v fi  d+
     CDO71680.1 195 AVVFFTSPTCPPCRMIEPVFEdlaHQKTHGIGSGRVAFIKVDL 237
                    5899**********9766554322789999******9997665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.21
                    HHHT--SS-EE..EETTEEE-TT- CS
  Thioredoxin_4 134 kkagiestPtf..iingekveepq 155
                     + g+  tPtf  +++g+k++e +
     CDO71680.1 247 GEWGVRVTPTFlfFLDGKKLDELK 270
                    67799*****73356***998654 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.3e-05     0.087     128     199 ..     191     260 ..     184     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-05
        TraF 128 akeygLlfFyrgkcpyceaqapilqafa..dkygl...evraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlv 199
                 a++++ +fF +++cp c++  p+ +++a  +++g+    v +++vd  +   + n     + a ++gv+ tP+++++
  CDO71680.1 191 AHRAAVVFFTSPTCPPCRMIEPVFEDLAhqKTHGIgsgRVAFIKVDLAVG--MGN-----QVAGEWGVRVTPTFLFF 260
                 67899**********************82245788555688888888877..667.....6677*********9876 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.5e-05      0.15       1      21 [.     196     216 ..     196     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.5e-05
                   EEEEESTSSHHHHHHHHHHHH CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlLke 21 
                   vv ft+ptCp C+++  ++++
    CDO71680.1 196 VVFFTSPTCPPCRMIEPVFED 216
                   899**********98877655 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.6e-05      0.14      19      93 ..     181     263 ..     167     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.6e-05
                 EEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTH.HHHHHCSTTTEEEEEESSSHH.....HHHHHHH.TT-TSEEEE-T CS
     Redoxin  19 nsvslse.fkgkkvvvnfvpgafcPtCsaehpylekl.aellkekgvdvvavvadndaf.....vkefwgk.eglkfpvlsDg 93 
                 n+ sl++ ++ +++ v+f+++ +cP+C+   p +e+l  ++ +  g   va + ++ a      v   wg    ++f++++Dg
  CDO71680.1 181 NPSSLHSlLQAHRAAVVFFTSPTCPPCRMIEPVFEDLaHQKTHGIGSGRVAFIKVDLAVgmgnqVAGEWGVrVTPTFLFFLDG 263
                 3445666666666677777777******9888777774666666667777777777777764444444443655577777776 PP

>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.0   0.00057      0.93     247     352 ..     100     207 ..      96     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00057
      SSP160 247 vatdcgcpnttsvaplvleweailaa.lealasssasanstssststststttststtttnsttstnstsssnsstiagsidiaan...ltvalqslqa 341
                  a +   p+t s a       a+ +a l+a+as + s+ s s+ t ++    +  st++tn    +n+  s+ sst+ag+i +++n   l   lq+ +a
  CDO71680.1 100 AAPQMPAPETLSAAASASPNPALASAlLQAVASQAYSTGSLSAPTPAT--VPSLGSTSSTNGY--ANANGSAGSSTVAGAIHMCTNpssLHSLLQAHRA 194
                 556666788888888877777776552688888877776665554444..4444556666665..566678999*********9983334445666555 PP

      SSP160 342 ..lllqeatcapa 352
                   +++   tc p+
  CDO71680.1 195 avVFFTSPTCPPC 207
                 2234566788888 PP

>> YqfQ  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   2.0      0.46   7.4e+02      16      60 ..      89     134 ..      73     144 .. 0.72
   2 ?    9.2   6.3   0.00081       1.3      25      67 ..     148     190 ..     123     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.46
        YqfQ  16 afmqsvggeesaagrg.gltstaaaAsggagaansnGalqgianpa 60 
                  f + v+g ++aa++  +  +  aaAs + + a ++  lq +a  a
  CDO71680.1  89 MFRRPVPGAAPAAPQMpAPETLSAAASASPNPALASALLQAVASQA 134
                 4556789999999987355555566666677788887888887665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00081
        YqfQ  25 esaagrggltstaaaAsggagaansnGalqgianpaslssmln 67 
                  ++ g  ++t++ a A+g+ag+   +Ga++  +np+sl s+l+
  CDO71680.1 148 VPSLGSTSSTNGYANANGSAGSSTVAGAIHMCTNPSSLHSLLQ 190
                 5667788999*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.55
# Mc/sec: 3444.41
//
Query:       CDO71681.1  [L=252]
Description: hypothetical protein BN946_scf184915.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-50  172.1   0.0    2.1e-50  171.8   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   0.0   1.2e-54   2.1e-50     262     441 ..       9     189 ..       2     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 1.2e-54
                 HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-T CS
        p450 262 elaatv.lellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipk 359
                 el+++v l+ + aG+dT+ stl  +++ + ++Pevq+k + E+d v+g +r p++ d+  lpy +avikE+LR h v+pl+lp+++ +d +i+gy++p+
  CDO71681.1   9 ELVKNVgLVAYEAGSDTSFSTLLGFFLAMCHYPEVQRKAQAELDAVVGPHRLPDFGDRDALPYINAVIKEALRWHIVLPLGLPHRTVQDDEIDGYFLPA 107
                 4444441455679************************************************************************************** PP

                 T-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTST CS
        p450 360 GtevivnlyalhrdpevfpnPeeFdpeRFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpet 441
                 Gt+ i+n++a+++d + +++P eF p+RF ++ +   + + + a   FG G+R C G+++A  +l l++a++L+ F +e++  +
  CDO71681.1 108 GTILIPNTWAMMQDADAYDKPREFYPDRFIRDGKldTT-VRDPAAYVFGYGRRVCAGRHFADEMLYLAIASVLHVFIIEPPL-D 189
                 ******************************99889644.55555556*****************************999843.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 1636.36
//
Query:       CDO71682.1  [L=859]
Description: hypothetical protein BN946_scf184915.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-48  165.2  22.7    1.1e-27   97.3   4.7    2.8  3  POP1      Ribonucleases P/MRP protein subunit POP1
    1.5e-34  118.2   0.3    1.5e-34  118.2   0.3    2.3  2  POPLD     POPLD (NUC188) domain
      6e-05   22.5   0.0       0.11   11.9   0.0    2.6  3  GCV_T     Aminomethyltransferase folate-binding domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.029   14.3   0.0    1.7  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain


Domain annotation for each model (and alignments):
>> POP1  Ribonucleases P/MRP protein subunit POP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   9.7     2e-24   8.9e-21       1      66 [.      71     136 ..      71     147 .. 0.88
   2 !   97.3   4.7   2.5e-31   1.1e-27     121     204 ..     139     221 ..     131     222 .. 0.92
   3 ?   -4.1   0.1       2.9   1.3e+04      68     147 ..     295     314 ..     278     320 .. 0.39

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 2e-24
        POP1   1 FvksrefEIkaleealkkskkasstraFQslPrklRRRtaSHnvkRvPkrlrarakremakdntpt 66 
                 F+++r+fEI+a++ea++++++++++ra+Q+lPr+lRRR+aSH+v+RvP rlr++a+ em   + + 
  CDO71682.1  71 FAEARAFEINAMQEAMQNARSNATQRAWQQLPRHLRRRAASHDVRRVPLRLRDKARAEMDTAKRKA 136
                 899********************************************************9876433 PP

  == domain 2  score: 97.3 bits;  conditional E-value: 2.5e-31
        POP1 121 dktkknklaeppkkkikylkrqkektWLpTHvwhaKRakmikrwgfaiplsptqKcyrlthRaaksrgavawDtSYmstieleg 204
                 +++ k++ +++pk+++++l+rqk+ktWL+TH+whaKR++m + wg++++++pt+K++r+ hR a+ +g + +D+SY++tie++g
  CDO71682.1 139 HSMPKKSKQNQPKRTVQLLRRQKDKTWLETHIWHAKRMHMDNMWGYRLAVTPTEKSFRPSHR-ASVHGSILHDASYFATIEIKG 221
                 55667778889***************************************************.9******************98 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 2.9
        POP1  68 earkrkkkslskrkrlrlrtakkllrlaakkkakkalaakkeekklnnkkgskdktkknklaeppkkkikylkrqkektW 147
                                                                              + ++k ++ +l+++ + +W
  CDO71682.1 295 G------------------------------------------------------------KGKEKAASSNLQQNTRVVW 314
                 2............................................................2223333333344444444 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.95   4.3e+03      54      77 ..      84     107 ..      76     116 .. 0.71
   2 !  118.2   0.3   3.3e-38   1.5e-34       1      92 []     526     617 ..     526     617 .. 1.00

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.95
       POPLD  54 ekeekeeeeeaeekwerkPpskRv 77 
                 e+++++++++ ++ w++ P   R 
  CDO71682.1  84 EAMQNARSNATQRAWQQLPRHLRR 107
                 455667777777789999987765 PP

  == domain 2  score: 118.2 bits;  conditional E-value: 3.3e-38
       POPLD   1 gwdlilPwgwglpfwlsLvrvgvrvgGlrerrqlalesgkpyfPddypdtkagekeekeeeeeaeekwerkPpskRvnysklgigspFacdW 92 
                 gw+li+P+gwg+pf+ sL+++g+rvgG+rer+++a+e+g  yfP+d+p t+a+e++++ +++++ee+werkPp+kR+ny+klg++sp++ dW
  CDO71682.1 526 GWTLIIPQGWGMPFLSSLIYTGTRVGGQRERQTQAFEAGCAYFPRDFPTTEAYEEYAEDRAADEEETWERKPPAKRPNYEKLGTRSPWKADW 617
                 7******************************************************************************************* PP

>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00047       2.1       9      64 ..     175     232 ..     168     245 .. 0.81
   2 !   11.9   0.0   2.4e-05      0.11     126     163 ..     342     382 ..     318     409 .. 0.76
   3 ?   -4.0   0.0       1.7   7.8e+03     192     244 ..     525     573 ..     520     576 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00047
       GCV_T   9 gakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaa..alLqr 64 
                   ++ ++ g+ ++v   ++s + +h+a   ++ l+D S+++ ie++Gp+    ++L++
  CDO71682.1 175 RMHMDNMWGYRLAVTPTEKSFRPSHRASVHGSILHDASYFATIEIKGPEDIlrSILDQ 232
                 5577888899999999899999**************************9432255555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.4e-05
       GCV_T 126 k..kdldvevedvteelallalqGPkarevlskll.gadls 163
                 +  ++ +ve+ d+ +++ ++ ++GPka +v++  l ++d +
  CDO71682.1 342 QvgRTAEVEMADLRDHFNVFEIMGPKASQVIKGALkPVDDK 382
                 2347889************************9888533333 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.7
       GCV_T 192 dGfeiyipaeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdld 244
                 +G+ ++ip+  +  +   L+ +g+    +  G + r+t   Eag + + +d+ 
  CDO71682.1 525 HGWTLIIPQGWGMPFLSSLIYTGT----RVGGQRERQTQAFEAGCAYFPRDFP 573
                 588888888888888888854444....7777777888888888877777766 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.5e-06     0.029      16      67 ..     783     845 ..     768     856 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.5e-06
     GCV_T_C  16 rggepilr.dgevvGhvTSgaysptlgksialAyvk..........aelaklgtevevevrgk 67 
                  +  +i    g ++G+vT+g +s +lg   a + ++          a++ + ++++ v+vr++
  CDO71682.1 783 TELSQISPsAGGIIGYVTTGSFSLSLGEGHATGAIPlrqylelrqqAQRLRNDGKLLVKVRNR 845
                 5555665337889***********************999988888877777788888888763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5847.49
//
Query:       CDO71683.1  [L=358]
Description: hypothetical protein BN946_scf184915.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.1    9.5   8.3      0.066   13.5   3.2    1.6  2  DUF1761   Protein of unknown function (DUF1761)


Domain annotation for each model (and alignments):
>> DUF1761  Protein of unknown function (DUF1761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.2   3.7e-06     0.066       7     102 ..      25     132 ..      20     150 .. 0.86
   2 ?   -3.7   0.2      0.75   1.4e+04       3      17 ..     197     211 ..     194     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-06
     DUF1761   7 alaafvvGflwYgpvFgkaWmkergmteekakeaenkalamglslvlslliay..................vlaallaalgartfkagallglllglgf 87 
                  l+ f++ +  Yg+ F +++   + ++++++k++       +++l+ls+ +++                  +l +l+ +lg rt   +++++l l++++
  CDO71683.1  25 LLIGFIFTATLYGLTFFQTYIYYTRFPADDKKTK------CIAELALSVTHTFwsvilvltigtefsstsnTLLLLVSHLGRRTAIPAIVIALSLAAFV 117
                 5778999999****99999998999999999984......56666666666666666888999999999999*************************** PP

     DUF1761  88 iapaiisnalfekks 102
                 ++  i ++alf++  
  CDO71683.1 118 SVAKITNEALFSRVG 132
                 ***********9976 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.75
     DUF1761   3 vllaalaafvvGflw 17 
                  +l++l+++  G +w
  CDO71683.1 197 AVLITLVTMPSGQVW 211
                 577888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2637.86
//
Query:       CDO71684.1  [L=363]
Description: hypothetical protein BN946_scf184915.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-92  310.4   0.0    1.5e-92  310.1   0.0    1.1  1  D123      D123


Domain annotation for each model (and alignments):
>> D123  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.1   0.0   8.1e-97   1.5e-92       1     304 [.      27     329 ..      27     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 310.1 bits;  conditional E-value: 8.1e-97
                 HHHHHGGGS--EEEE.S--HHHHHHHCSSSEE-----...............--------------------...HHHHHHHHHHHHHTTS-EEEE-SS CS
        D123   1 Wypkfrkltikskii.plpeefleYLeedgivlpeeseeekesaeesesdsdseesdsedeeeeeeeeeepseefpeleekikeaieelggavfpKlnw 98 
                 Wyp+f+ ++iks +i pl+++f eYL++dg+++pe++e+            +s+ sd+e +ee ++e    + +fpel++ki+e+i+e+ gavfpKln+
  CDO71684.1  27 WYPRFSGHSIKSIVIrPLSATFREYLDSDGVFVPEGAEDLP---------AESTLSDDEGDEEAADEP--VRFAFPELDAKIREIIAEY-GAVFPKLNF 113
                 *************************************8864.........444445544444444443..479****************.78******* PP

                 ---GGGCCTSSSSS.S-BSSHHHHHHHHHT-HHHHHHHH..HTTTTBT.--TTS-S-TT----EEEEE-----GGGEEEEEEETTEEEEEEESSSS--T CS
        D123  99 saPkDAawilaens.lkctsvndvylLLksSdfiahDLe..hafdece.eeeeesekeeieleLvLrkwfdlnpslefRcFVkdrkLiaisqRdlnyyd 193
                 s+P+DAaw+l+++s lkcts++dvylLLksSdf++hDL+    fd ce +   +++++++eleLvLrkw+ ++++ e RcFV++++LiaisqRd n+yd
  CDO71684.1 114 SSPRDAAWMLPASSpLKCTSPADVYLLLKSSDFVQHDLDlgLVFDGCEpAYPVDASSSPYELELVLRKWYPVDRARELRCFVRQENLIAISQRDPNHYD 212
                 **************************************76689****766667788889**************************************** PP

                 HHHHT..HHHHHHHHHHHHHT..TTTSSSS..SEEEEEEEETT..EEEEEEEEESSTTS--TTS-HHHHH.......HS-TTSSS-EEE----XXXX.. CS
        D123 194 fleel..keelkekieeffeeklkekfpde..syvfDvyvpkkldkvkliDinpfaertdslLFtweeLl..eeeeeeeeeeeeepelrlvesekdvea 286
                 f +e   ++++ +++++f+e+++k k++++  +y+fD  ++++l++ +++D+np+ +rtd+lLFt+eeL+    + +++++   +p lr+++s ++++a
  CDO71684.1 213 FWNERetQDKVVNAVTTFWEKHIKGKWEQTqgDYTFDFLLTRDLSRGHIVDFNPYLPRTDPLLFTYEELHdiLLSCTSAHDVVPRPVLRVIDSPSHPAA 311
                 **998789******************9964449*************************************44234455666677899**********99 PP

                 XXXXXXXXXXXXXXXXXX CS
        D123 287 nfaskeysankvPkdvvd 304
                 + +++++++n+vP + + 
  CDO71684.1 312 ARNAPTHQHNMVPFEALV 329
                 99***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2571.70
//
Query:       CDO71685.1  [L=635]
Description: hypothetical protein BN946_scf184915.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00017   21.2   0.0    0.00047   19.8   0.0    1.7  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.071   12.8   0.1       0.35   10.6   0.1    2.0  2  FAD_binding_5  FAD binding domain in molybdopterin dehydrogen


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.2e-08   0.00047       3     222 ..     325     612 ..     325     625 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.2e-08
                    EEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH.................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
  Exo_endo_phos   3 wNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsp.................................. 64 
                    +Nv + a++ +  +++  ++a+ l  + +D+++LQE++d++++  + +  +  +++ s+ ++                                  
     CDO71685.1 325 YNVENMAPTTAHLPAVANHIANFL--NSPDIVFLQEIQDNSGEKDDGTVSA--NVTLSTLATaisaargatnatyafleiapendedggapggnir 416
                    677776677778888889999999..778****************999944..4444444445555555556666666677777775555666666 PP

                    ........................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE..................... CS
                    ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
  Exo_endo_phos  65 ........................tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni..................... 115
                                            t +++g ++++a+ +++                                 i                     
     CDO71685.1 417 taylynatkiglvpgspaggaldaTEPVRGADGKVALTFNPGR-------------------------------Idptnpawdasrkplvalwetp 481
                    6566666666666667777777776667777777766666655...............................0333334444444444555555 PP

                    ...........................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCE CS
                    ...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 ...........................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapvglyllgg 184
                                               + +  +  ++ + + +       l +d++a viv GD N                              
     CDO71685.1 482 hghrfftvnlhltakldgsstqgdarpPVNGGVEQRISQVATIATFIQSLLALDPHATVIVGGDCNE----------------------------- 548
                    5555555566799999**********999999***********************************............................. PP

                    TTTTTTTTTTTEB-B.......................................EEEEEECHHHCCEEEEEEECCHH CS
                    xxxxxxxxxxxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 185 gptptyvtraggsrl.......................................Drilaspalalfrsgvlppplal 222
                                  +                                       D+ ++s+a+ +++ + +++ ++ 
     CDO71685.1 549 -------------YVqtravfapfdgllteldgaagvppverytylfdqnseqlDHLFVSNAVVRRGGLAVEHVHVN 612
                    .............44444455555555555555555555555555555555555******98777777777666654 PP

>> FAD_binding_5  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   3.9e-05      0.35      49     113 ..     352     421 ..     326     458 .. 0.76
   2 ?   -0.9   0.0      0.13   1.2e+03       7      31 ..     520     545 ..     515     558 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.9e-05
                    EGTTSGGGS-EEEESSEEEEETTSBHHHHHHHHHHHHHHHHSHHHHHTSS-HHHHHH-BHHHHH.....H CS
  FAD_binding_5  49 ditgipelkeieeteggleiGAavtlselaaealvrerypalsealekiAspqiRnvaTiGGNl.....a 113
                    di  ++e+++ + +++  ++ A+vtls la+    ++   + ++a+ +iA +     +  GGN+      
     CDO71685.1 352 DIVFLQEIQDNSGEKDDGTVSANVTLSTLATAISAARGATNATYAFLEIAPENDEDGGAPGGNIrtaylY 421
                    6666777788888889999***********9999999999999*********************555544 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.13
                    E-SSHHHHHHHHHH.CTTSEEESS-T CS
  FAD_binding_5   7 rpasleealallaa.epdaklvaGgt 31 
                    + a+++++++ l a +p+a++++Gg 
     CDO71685.1 520 QVATIATFIQSLLAlDPHATVIVGGD 545
                    556666666655555*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4581.13
//
Query:       CDO71686.1  [L=252]
Description: hypothetical protein BN946_scf184915.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1676.91
//
Query:       CDO71687.1  [L=281]
Description: hypothetical protein BN946_scf184915.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2028.03
//
Query:       CDO71688.1  [L=317]
Description: hypothetical protein BN946_scf184915.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-74  244.3   0.1    1.2e-25   89.3   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   6.5e-30   1.2e-25       9      94 ..       1      86 [.       1      89 [. 0.97
   2 !   73.3   0.0   6.3e-25   1.1e-20       4      93 ..     116     202 ..     113     206 .. 0.92
   3 !   78.7   0.0   1.3e-26   2.3e-22       3      95 ..     210     312 ..     208     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 6.5e-30
                HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94
                ++aG+ +g+va+++t+Pldv+Kt+lq+q+  + ++++ +++ ++k i+k++GlrglyrGl+p++l++ p++a++f++y+ +kr++ 
  CDO71688.1  1 MIAGAGGGLVASIATCPLDVIKTKLQAQRAVNPQEGYLGVVATVKDIVKHDGLRGLYRGLGPTILGYLPTWAIYFAVYDGIKRHFG 86
                589*********************************999********************************************996 PP

  == domain 2  score: 73.3 bits;  conditional E-value: 6.3e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +++ ++l++++aga++t++t+Pl+v+Ktr++tq++++     +++ld+  +iy++eG r+++rGllp+ll+++   a++f lye lkr  
  CDO71688.1 116 PWTLHILSAMAAGATSTICTNPLWVIKTRFMTQPRNEVRY--KHTLDAALTIYRTEGGRAFFRGLLPSLLGIT-HVAVQFPLYEHLKRAA 202
                 677899*****************************98764..45****************************9.9************976 PP

  == domain 3  score: 78.7 bits;  conditional E-value: 1.3e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 l++ + l+++++a+++a+++t+P +vv+trlqtqk+   +++ +a          i++++k+++ +eG r+lyrGl++nl+r++p+sa+++++ye++ r
  CDO71688.1 210 LTPGQILACSAVAKMTASIATYPHEVVRTRLQTQKRPLVTAGTEAvdapprshagIVRTVKHMLAHEGWRALYRGLSVNLVRTVPNSAVTMLTYEMIVR 308
                 56678899*************************9999877777778889999999******************************************** PP

                 HHCT CS
   Mito_carr  92 lllk 95 
                 +l+ 
  CDO71688.1 309 YLNA 312
                 9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2210.03
//
Query:       CDO71689.1  [L=133]
Description: hypothetical protein BN946_scf184915.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-24   84.2   0.8    2.9e-21   75.2   0.8    2.1  1  NTP_transf_9  Domain of unknown function (DUF427)


Domain annotation for each model (and alignments):
>> NTP_transf_9  Domain of unknown function (DUF427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.8   1.6e-25   2.9e-21       1      92 [.       2     107 ..       2     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.6e-25
                   EEEE-SS-EEEEES--EEEEETTS--EEEB-GGGB-GGGEEEEEEEEEETT....TEEEEEEEEEETTE................EEEEEEEEESS- CS
  NTP_transf_9   1 vrvklngtvvaetddavvveetglppryYfppedvklellkpsdtttvCpw....KGeasyyslavdgk................evkdaaWsYpep 77 
                   v+v+lngtv+ae+d+++vve+     ++Yfpp++v++++l+ps+t   Cp      G++s  s++++                  +v+d+aW+Ypep
    CDO71689.1   2 VKVTLNGTVLAESDNTKVVEG-----NHYFPPDSVNTDVLSPSST-HECPTvedsHGATSLTSISARPArgrvasyydatiggktVVNDVAWYYPEP 92 
                   689******************.....************7777766.4455545554444444443322223344444444444479*********** PP

                   -TT-GGGTT-BEE-T CS
  NTP_transf_9  78 tpeaaeikgyvaFya 92 
                   +++a++ikgy+aFy+
    CDO71689.1  93 KEKASDIKGYLAFYK 107
                   **************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1009.60
//
Query:       CDO71690.1  [L=131]
Description: hypothetical protein BN946_scf184915.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1004.84
//
Query:       CDO71691.1  [L=240]
Description: hypothetical protein BN946_scf184915.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1817.41
//
Query:       CDO71692.1  [L=86]
Description: hypothetical protein BN946_scf184915.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 662.51
//
Query:       CDO71693.1  [L=439]
Description: hypothetical protein BN946_scf184915.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-61  207.2   0.0    1.5e-57  194.8   0.0    2.2  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.8e-34  118.7   0.0    3.8e-34  118.2   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.1e-18   67.8   0.0    2.4e-14   53.5   0.0    2.7  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.7e-13   48.6   0.0    4.1e-08   32.7   0.0    2.3  2  NAD_binding_4    Male sterility protein
      7e-11   41.8   0.0    1.1e-10   41.1   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    2.2e-10   40.8   0.0    3.4e-10   40.1   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    3.3e-05   23.2   0.1    0.00012   21.3   0.1    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0008   19.0   0.1     0.0072   15.9   0.1    2.0  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.022   14.6   0.2       0.06   13.3   0.2    1.8  1  KR               KR domain


Domain annotation for each model (and alignments):
>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8   0.0   7.4e-61   1.5e-57       1     233 [.      15     228 ..      15     239 .. 0.93
   2 !   10.2   0.0   0.00013      0.27     240     270 ..     320     349 ..     308     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 194.8 bits;  conditional E-value: 7.4e-61
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +v+Gg+GFlGr++v++L+ +++   v v+Dl+++++         v  +  gD+ +++ +++al+++ +   ++++++++g +    + kvnv GT+ v
  CDO71693.1  15 LVIGGSGFLGRHVVEALLARGD--SVSVFDLVQRHHD--------VP-FYSGDISEEELVSDALRKSGATCIIHTASPMHGLDDPALYWKVNVDGTQAV 102
                 69*******************6..9******988766........55.89**************86655555555889********************* PP

   3Beta_HSD 100 leacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpllkqlak 198
                 ++a++ +gv++lvYtSsa+vv++   g+++++ dE+ +  ++ +d+y+esKa aE+lvl+aNg   k+g  l+T+aLRpagi+G+gd+++++ l q+ +
  CDO71693.1 103 INAAIANGVPKLVYTSSAGVVFD---GHDLIDVDERIPPLEKAMDPYNESKAKAEELVLAANG---KGG--LCTVALRPAGIFGPGDHQFLAGLFQAWQ 193
                 ***********************...*************************************...777..**************************** PP

   3Beta_HSD 199 lglalfkigdeevlsdrvYvgNvawahilAaralq 233
                  g++ +++gd+ +++d++YvgN ++ah+lAa +l 
  CDO71693.1 194 RGQSHIQVGDNTNIFDWTYVGNCVHAHLLAADKLG 228
                 *******************************9995 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00013
   3Beta_HSD 240 svagqayfisddsPvesyddfnltllkelgl 270
                 +vagq++fi++ +P+  ++d+ + + + ++ 
  CDO71693.1 320 QVAGQVFFITNGEPTG-FWDMPRVVYRFFDE 349
                 69**************.****9999887775 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   1.9e-37   3.8e-34       2     228 ..      15     226 ..      14     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.9e-37
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 lV+G++Gf+G+++v+all++g  v ++d        +r++d+ ++ +d+ +++ + +++++ +++++ih    +++++  +dpa +++ n+ gt+ +++
  CDO71693.1  15 LVIGGSGFLGRHVVEALLARGDSVSVFDLV------QRHHDVPFYSGDISEEELVSDALRKSGATCIIHT---ASPMHGLDDPALYWKVNVDGTQAVIN 104
                 8********************999999988......6677889***************************...77999999****************** PP

                 HHHHHTCTEEEEEEEGGGGTSCSS.SSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTS CS
   Epimerase 101 aarkagvkrllflsSsevYGkdae.qpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegk 197
                 aa ++gv +l++ sS+ v  ++++ +  +e +   pl k   pY  +K+ +e+lv a++ ++gl +++lr+  ++Gp+     ++++++ l +  ++g+
  CDO71693.1 105 AAIANGVPKLVYTSSAGVVFDGHDlIDVDERI--PPLeKAMDPYNESKAKAEELVLAANGKGGLCTVALRPAGIFGPG-----DHQFLAGLFQAWQRGQ 196
                 ************************54444444..356*****************************************.....999*********99*9 PP

                 SSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 198 qevtllgdgtalRdflyveDvaeaillvleh 228
                  + + +gd t+  d+ yv  ++ a+ll++++
  CDO71693.1 197 -SHIQVGDNTNIFDWTYVGNCVHAHLLAADK 226
                 .99999**********************998 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.2e-17   2.4e-14       1     237 [.      15     224 ..      15     254 .. 0.86
   2 !   10.8   0.0   0.00012      0.24     307     332 .]     400     425 ..     388     425 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.2e-17
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+ G++Gf G +++e Ll++g  v +++             l ++     ++++ +++gD+++++ + ++l++   + +++ A   h    +++P+
     CDO71693.1  15 LVIGGSGFLGRHVVEALLARGDSVSVFD-------------LVQR-----HHDVPFYSGDISEEELVSDALRKSGATCIIHTASPMH---GLDDPA 89 
                    899*********************7753.............2221.....12578****************************9988...799*** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS--..---SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-T CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpf..yPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrge 190
                     +++vnv Gt+ +++a+ a g+   + +y +S   v+   + + ++E+ p   ++  PY  +K+ a+ +v + + + gl +v  +     +p   +
     CDO71693.1  90 LYWKVNVDGTQAVINAAIANGVP--KLVYTSSAGVVFDGHDLIDVDERIPPleKAMDPYNESKAKAEELVLAANGKGGLCTVALRPAGIFGPGD-H 182
                    ******************99985..4667777777888888899999987423689************************************94.4 PP

                    TSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHH CS
  GDP_Man_Dehyd 191 tfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlml 237
                    +f       ++ ++ +  q+ +++G+  ++ dw++v   v+a  l+ 
     CDO71693.1 183 QFL-----AGLFQAWQRGQSHIQVGDNTNIFDWTYVGNCVHAHLLAA 224
                    444.....555566666679999******************987755 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
                    -B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 307 lgdaskakeeLgWkpkvsfeelvrem 332
                    + +++ka++ Lg++p+v++ee++r++
     CDO71693.1 400 CFNIEKARRVLGYEPQVGLEEGIRRT 425
                    67899******************986 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.4e-05     0.028       3      30 ..      18      45 ..      16      50 .. 0.88
   2 !   32.7   0.0     2e-11   4.1e-08      65     254 ..      53     217 ..      46     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                   -TTSHHHHHHHHHHHHHS-.TEEEEEE- CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpevkiyllvR 30
                   G++GFLG++++e LL + + v ++ lv 
     CDO71693.1 18 GGSGFLGRHVVEALLARGDSVSVFDLVQ 45
                   9****************99999998886 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 2e-11
                    EE--TTSGGGG--HHHHHHHHHH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H...... CS
  NAD_binding_4  65 veGDlseprlGLseedlqelaeevdviihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekee 159
                    ++GD+se++l   +++l++     ++iih a  ++  ++    ++vNv+Gt+ v++ a +      l++ S+ ++v + +   +            
     CDO71693.1  53 YSGDISEEEL--VSDALRKS--GATCIIHTASPMHGLDDPALYWKVNVDGTQAVINAAIANGVP-KLVYTSSaGVVFDGHD-LI------------ 130
                    5666666664..33334433..5689********************************988778.8899999644444444.44............ PP

                    HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHH CS
  NAD_binding_4 160 kldederaklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyva 254
                     + ++    l++  + Y+ sKa aE+lv +a+ ++gl +v +Rp  i g   +G     +  ++gl+ + ++g+    +gd+ + +d++ v  ++
     CDO71693.1 131 -DVDERIPPLEKAMDPYNESKAKAEELVLAANGKGGLCTVALRPAGIFG---PG---DHQ-FLAGLFQAWQRGQSHIQVGDNTNIFDWTYVGNCV 217
                    .66667777888999********************************99...32...223.5667777777777777777777667766666655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   5.5e-14   1.1e-10       4     171 ..      15     196 ..      13     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 5.5e-14
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre.........eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealAeaaa 90 
                    lv+G++G lG++++++l ++g +v  ++           + d++++e v ++l++    +++++A      +  +++++  +vn+++++a+ +aa 
     CDO71693.1  15 LVIGGSGFLGRHVVEALLARGDSVSVFDLVqrhhdvpfySGDISEEELVSDALRKSGATCIIHTASP---MHGLDDPALYWKVNVDGTQAVINAAI 107
                    89***************99996666654334579******************************974...455679******************** PP

                    HCT-E.EEEEEE.GGGS-S-TTS-B-TTS----SSH....HHHHHHHHHHHHHHH-S....SEEEEEE-SEESSSSS-HHHHHHHHHHH-S CS
  RmlD_sub_bind  91 avgal.LihvSt.DyVFdGekkrpYeeddetsPlnv....YGrtKlaGEqavlaagk....kalivRtswvygekgknfvktmlrlakere 171
                    a g++ L++ S+   VFdG+       d++  Pl      Y ++K++ E+ vlaa+      ++ +R + ++g  +++f++ +++  ++ +
     CDO71693.1 108 ANGVPkLVYTSSaGVVFDGHD--LIDVDERIPPLEKamdpYNESKAKAEELVLAANGkgglCTVALRPAGIFGPGDHQFLAGLFQAWQRGQ 196
                    ***966***9872589****4..45667777676432333*************9665222257889**************99888765544 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.7e-13   3.4e-10       1     146 [.      18     176 ..      18     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.7e-13
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT..T-SEEEES---TCC.HHHH.........HHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk..gadaVvsalggggk.deeg.........aknivd 83 
                     G++G  Gr++v+ llarg  +v ++       + ++++  +   +gd++++e + +al+  ga  ++ ++++ ++ d+ +         ++++++
      CDO71693.1  18 GGSGFLGRHVVEALLARG-DSVSVF-------DLVQRHHDVPFYSGDISEEELVSDALRksGATCIIHTASPMHGlDDPAlywkvnvdgTQAVIN 104
                     9****************7.666555.......222345567799**************8446666777776655563333456666666****** PP

                     HHHHCT--EEEEEEETTTTS......GCGCHHHHHHHHCCHHHHHHHHHHHHHHHH....SSSEEEEEEE-CE CS
  NAD_binding_10  84 aakeagvkRfvlvsaigvgd......evpgefgewnkellkaylaakraaeellra....sgldwTivrpggL 146
                     aa ++gv ++v+ s++gv        +v+++ +++ ++++ +y + k++aeel+ a     gl  + +rp+g+
      CDO71693.1 105 AAIANGVPKLVYTSSAGVVFdghdliDVDERIPPL-EKAMDPYNESKAKAEELVLAangkGGLCTVALRPAGI 176
                     ******************75112222344445444.5689************975545656899999999887 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   6.1e-08   0.00012      60     128 ..      54     119 ..      14     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.1e-08
                      E--TT-HHHHHHHTT..T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  60 igdvrdkerlekaleelkvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                       gd+ ++e +++al++ +  +++h+A   h       p+  +k Nv gt+ vi+aai++gv k+v+ S+
       CDO71693.1  54 SGDISEEELVSDALRKSGATCIIHTASPMHG---LDDPALYWKVNVDGTQAVINAAIANGVPKLVYTSS 119
                      59************************96663...4689999*************************997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   3.6e-06    0.0072       2     100 ..      15     117 ..      14     129 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.6e-06
                 EESSTTSHHHHHHHHHHHHHT-EEEE..EES-S............-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG........... CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvra..lvRdt............kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy........... 75 
                 lviG++G +G++vv+all++g +v +  lv               ++ ++++l ++G++ +                        ++            
  CDO71693.1  15 LVIGGSGFLGRHVVEALLARGDSVSVfdLVQRHhdvpfysgdiseEELVSDALRKSGATCI----------------------IHTASpmhglddpaly 91 
                 7******************777665511554444445555555444444444555555444......................2222234455555555 PP

                 .S-HHHHHHHHHHHHHHHS-SEEEEE CS
        NmrA  76 .skeiedgkklvdAakeaGvkhfiyS 100
                  + +++  +++++Aa + Gv++++y 
  CDO71693.1  92 wKVNVDGTQAVINAAIANGVPKLVYT 117
                 45556666666666666666666665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     3e-05      0.06       2      26 ..      13      37 ..      12     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                EEEEETTTSHHHHHHHHHHHHHHS- CS
          KR  2 tylitGGlGgLGlelarwlaekgar 26
                +yl++GG G LG+++++ l+++g +
  CDO71693.1 13 VYLVIGGSGFLGRHVVEALLARGDS 37
                7*********************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3232.88
//
Query:       CDO71694.1  [L=423]
Description: hypothetical protein BN946_scf184915.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.41   10.9   0.0    1.7  1  AlkA_N    AlkA N-terminal domain


Domain annotation for each model (and alignments):
>> AlkA_N  AlkA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.3e-05      0.41      20      51 ..      89     120 ..      75     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.3e-05
      AlkA_N  20 aaraiegvEavdedsygRtlrldgakGvvevr 51 
                 a+r i+ +E+v ++ y Rt+ ++ a+G +e  
  CDO71694.1  89 ATRDITSMECVPDGGYDRTVYVGYADGSLERV 120
                 689***********************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3392.61
//
Query:       CDO71695.1  [L=579]
Description: hypothetical protein BN946_scf184915.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-38  130.4   0.0      4e-38  129.3   0.0    1.6  1  EF_assoc_2       EF hand associated
    2.7e-32  110.2   0.4    5.7e-32  109.1   0.4    1.6  1  EF_assoc_1       EF hand associated
    8.9e-32  109.9   0.0    7.1e-20   71.2   0.0    2.2  2  Ras              Ras family
    2.7e-18   66.3   0.0    9.8e-10   38.7   0.0    2.8  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    4.9e-11   42.9   0.1    0.00024   21.5   0.0    3.3  3  EF-hand_7        EF-hand domain pair
    5.2e-11   41.6   0.1    5.5e-05   22.8   0.0    2.8  2  EF-hand_6        EF-hand domain
    1.8e-10   40.5   0.0    0.00025   20.6   0.0    3.3  2  Arf              ADP-ribosylation factor family
    4.5e-10   38.3   0.5    0.00037   19.8   0.0    2.8  2  EF-hand_1        EF hand
    7.2e-08   32.5   0.0     0.0051   16.9   0.0    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
      1e-07   31.1   2.0     0.0061   16.0   0.1    2.7  2  EF-hand_5        EF hand
    3.8e-06   27.4   0.1       0.14   12.5   0.0    2.5  2  AAA_16           AAA ATPase domain
    5.4e-06   26.7   0.2      0.039   14.2   0.0    3.0  2  AAA_22           AAA domain
    7.6e-06   25.7   1.2     0.0075   16.1   0.1    2.5  2  EF-hand_10       EF hand
    9.6e-06   25.8   1.6       0.26   11.3   0.0    3.3  3  Dynamin_N        Dynamin family
    3.4e-05   24.4   0.0       0.07   13.7   0.0    2.6  2  AAA_18           AAA domain
    5.5e-05   23.7   0.0       0.35   11.4   0.0    2.5  2  ABC_tran         ABC transporter
      7e-05   22.8   0.1       0.26   11.2   0.0    3.4  3  RsgA_GTPase      RsgA GTPase
    8.4e-05   22.8   0.0       0.54   10.4   0.0    3.0  2  AAA_33           AAA domain
    0.00013   21.6   0.1      0.085   12.6   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
    0.00018   22.0   0.0       0.31   11.5   0.0    2.5  2  AAA              ATPase family associated with various cellul
    0.00021   21.2   0.0       0.51   10.2   0.0    2.7  2  NACHT            NACHT domain
    0.00028   20.7   0.0       0.16   11.7   0.0    2.5  2  VirE             Virulence-associated protein E
    0.00034   20.0   0.0      0.057   12.7   0.0    2.3  2  Septin           Septin
    0.00051   19.9   1.8        4.1    7.1   0.1    4.1  4  ATP_bind_1       Conserved hypothetical ATP binding protein
    0.00055   20.2   0.0       0.54   10.5   0.0    2.7  2  AAA_28           AAA domain
    0.00056   19.7   0.0      0.097   12.4   0.0    2.7  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
    0.00076   19.3   0.0       0.32   10.7   0.0    2.4  2  AAA_24           AAA domain
     0.0011   18.3   0.0        1.6    7.8   0.0    2.7  3  G-alpha          G-protein alpha subunit
     0.0011   19.3   0.0          1    9.8   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0012   18.3   0.0          1    8.8   0.0    2.5  2  SRPRB            Signal recognition particle receptor beta su
     0.0016   18.0   0.0      0.069   12.7   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
     0.0039   17.5   1.9       0.73   10.2   0.0    3.0  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0046   16.2   0.1       0.58    9.3   0.0    2.2  2  DUF815           Protein of unknown function (DUF815)
     0.0049   16.0   0.0      0.084   12.0   0.0    2.2  2  MCM              MCM P-loop domain
     0.0054   16.3   0.0       0.33   10.5   0.0    2.4  2  AAA_25           AAA domain
     0.0078   16.0   0.2        4.6    7.2   0.0    2.9  2  EF-hand_8        EF-hand domain pair
     0.0092   15.9   0.0        3.2    7.6   0.0    2.3  2  Ploopntkinase3   P-loop Nucleotide Kinase3
     0.0094   15.7   0.2        2.1    8.2   0.1    3.2  3  NOG1             Nucleolar GTP-binding protein 1 (NOG1)
  ------ inclusion threshold ------
      0.012   14.8   0.0          1    8.5   0.0    2.3  2  NB-ARC           NB-ARC domain
      0.016   15.0   0.0        0.5   10.1   0.0    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.021   15.4   0.1        3.8    8.0   0.0    2.4  2  AAA_23           AAA domain
      0.022   14.7   0.0       0.79    9.7   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
      0.023   14.0   0.1        3.4    6.9   0.0    2.3  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.027   14.1   0.4        3.5    7.2   0.0    3.0  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.032   14.2   0.0        6.5    6.8   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.045   13.0   0.0        9.1    5.5   0.0    2.3  2  Zeta_toxin       Zeta toxin
      0.062   12.7   0.0        6.5    6.1   0.0    2.3  2  TniB             Bacterial TniB protein
      0.075   13.1   0.0        4.4    7.3   0.0    2.6  2  AAA_14           AAA domain
      0.081   12.2   0.0       0.34   10.2   0.0    2.0  2  AIG1             AIG1 family
      0.095   12.6   0.2        5.8    6.8   0.0    3.1  3  ATPase_2         ATPase domain predominantly from Archaea
      0.095   12.4   0.0        2.6    7.7   0.0    2.3  2  AAA_30           AAA domain
        0.2   11.4   0.0        3.8    7.2   0.0    2.7  3  Sigma54_activat  Sigma-54 interaction domain
       0.24   11.1   0.0         17    5.0   0.0    2.2  2  AAA_15           AAA ATPase domain


Domain annotation for each model (and alignments):
>> EF_assoc_2  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   1.2e-40     4e-38       1      87 []     221     307 ..     221     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 1.2e-40
  EF_assoc_2   1 kpLseeeledikevvskklpegveeegltlkGFlllnklfiekGrhettWtvLrkFgYddsLsLkeeflhPkldvpedssveLspkG 87 
                 +pL+++ele+ike+v+++ + gv+++glt++GFl+l+++fi++Gr+ettWtvLrkFgY ++L+L+e+fl+Pk+dvp+d+sveLsp G
  CDO71695.1 221 TPLQAQELEGIKEMVRQHAEGGVRDNGLTEAGFLYLHTIFIQRGRLETTWTVLRKFGYGEDLRLTESFLYPKFDVPHDCSVELSPLG 307
                 59**********************************************************************************987 PP

>> EF_assoc_1  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.4   1.7e-34   5.7e-32       1      74 [.     343     411 ..     343     412 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.7e-34
  EF_assoc_1   1 WaeaefpsstvtneegavtlqGwLaqWsltTlldvkttleyLaYlGypssslseeettsAlkvtrprkldrkkk 74 
                 Wa+++fp++tv +++gavtlqGwLaqWs+tTlld++ttl+yLaYlGyp     +e+ tsAl+vtrprk+dr+k+
  CDO71695.1 343 WAGQKFPDTTVSDDTGAVTLQGWLAQWSMTTLLDHRTTLAYLAYLGYP-----DEPRTSALQVTRPRKVDRRKG 411
                 ***********************************************9.....34678**************98 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   2.1e-22   7.1e-20       1     160 [.       6     168 ..       6     170 .. 0.80
   2 !   36.7   0.0     9e-12   3.1e-09       4     118 ..     422     534 ..     420     577 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.1e-22
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEET.TSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTA.Gqeefkslrelyyrdaegillvyditsresfenvkkwveeik 98 
                 +++lvGd++vGK++++++ +k++F  + ++ +   + t   ev  ++v+  i D   G ++ ++l e+ +r+a++i +vy+i++ +sf+++ +++    
  CDO71695.1   6 RILLVGDEGVGKSTIVTSLIKESFVPRVQHIV--PEVTIPPEVTPENVTTYIVDSGcGPNDQHHL-ESEIRKAHVICVVYAIDNPNSFDRIPTYWLPYF 101
                 589************************99988..6677778899999999****85266666666.5678**********************8777788 PP

                 HHSTTTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHT..SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee....kravsteegeelakelg..lkfletSAktnenveeafeellrei 160
                 r+   nvp++LvGnK+Dl+     ++a++ e    + +e++   + +e+SAk   nv+e+f+ + +++
  CDO71695.1 102 RQLGVNVPVILVGNKIDLRGgevtNEALEDEIIP-IMNEFKevETCVECSAKLPLNVSEVFYFAQKAV 168
                 888889*************844433333333333.334444345689**************9888776 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 9e-12
                 EEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTT.ESEEEEEEETTBHHHHHTHHHHHHHHHHHS CS
         Ras   4 lvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrd.aegillvyditsresfenvkkwveeikrva 101
                 + G  + GKtsll  f+ + F++ ye+T  +++ ++++++dg+e  l +       e + lr+   +d a++i+ vyd ++++sf+ ++++ ++ +   
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPFSQVYEPTKKMNSVVNSVDIDGSEKYLVLQEFGSRYEAEMLRNPKKTDlADVIVYVYDSSDTNSFSYISNLRQQYS--L 518
                 6799**********************************************9999999999987655543899999**********99998887643..3 PP

                 TTTSEEEEEEETTTGGG CS
         Ras 102 eenvpivLvGnKvDlee 118
                  +++p + v++K+Dl+ 
  CDO71695.1 519 -DHIPTLFVATKSDLDL 534
                 .5799*********986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.9e-12   9.8e-10       1     120 []       6     119 ..       6     119 .. 0.80
   2 !   24.5   0.0   7.3e-08   2.5e-05       4     119 ..     422     531 ..     420     532 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.9e-12
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 +++lvGd+gvGK+++++++++++f ++ + ++   ++  evt           ++v+  i D +   + +   ++ +r+a+++++vy     +s++++ 
  CDO71695.1   6 RILLVGDEGVGKSTIVTSLIKESFVPRVQHIVPEVTIPPEVT----------PENVTTYIVDSGCGPNDQHHLESEIRKAHVICVVYAidnPNSFDRIp 94 
                 699**********************99888876555555542..........13577889999866666666677789999999998644455677774 PP

                 HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  96 keWlkelkkvagkspvilvgnkiDl 120
                  +Wl  +++ + + pvilvgnkiDl
  CDO71695.1  95 TYWLPYFRQLGVNVPVILVGNKIDL 119
                 68*********************95 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 7.3e-08
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-.HHHHCTSCEEEEEEEGHHHHCHHHHHHH CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslh.plylreaalailvydsrssenlkeWlke 101
                 ++G +g+GKtsll+ f  + fs+ +++t  ++ + ++v +i+g        +  l +  ++   + + l+ p     a+++++vyds++ +++ +++++
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPFSQVYEPTKKMNSVVNSV-DIDGS-------EKYLVLQEFGSRYEAEMLRnPKKTDLADVIVYVYDSSDTNSF-SYISN 511
                 78*****************************9998876.56662.......33577889***9999998625666678899999998665555.78888 PP

                 HHHHCS..SS-EEEEEE-TT CS
         Roc 102 lkkvag..kspvilvgnkiD 119
                 l+++ +  ++p ++v++k D
  CDO71695.1 512 LRQQYSldHIPTLFVATKSD 531
                 888754337899******99 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.2e-07   0.00024       3      57 ..     190     239 ..     188     256 .. 0.84
   2 !   17.4   0.0   1.3e-05    0.0045       7      36 ..     314     338 ..     308     357 .. 0.83
   3 ?   -1.3   0.0       9.1   3.1e+03      44      66 ..     450     473 ..     431     478 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.2e-07
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk 57 
                 +l+++Fk+ Dt++dg ld +el ++ rk     + + +l  +ele + +++ ++ 
  CDO71695.1 190 ALRRIFKLCDTNKDGVLDAAELNEFQRK-----CFDTPLQAQELEGIKEMVRQHA 239
                 6899***********************9.....7788888888877777665555 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.3e-05
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgag 36 
                  F+ +D+d+dg l+keel++l+       +
  CDO71695.1 314 LFENHDKDQDGALNKEELEELFST-----S 338
                 4******************99986.....4 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 9.1
   EF-hand_7  44 eelellfkefDtdkd.GvisfdEF 66 
                 +++  +++ +D d++  ++ ++EF
  CDO71695.1 450 KKMNSVVNSVDIDGSeKYLVLQEF 473
                 567889999999998568888887 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.6e-07   5.5e-05       2      27 ..     191     216 ..     190     226 .. 0.91
   2 !   15.8   0.0   2.7e-05    0.0093       5      27 ..     314     336 ..     310     346 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lr++Fkl D+++dG +da+El  + r
  CDO71695.1 191 LRRIFKLCDTNKDGVLDAAELNEFQR 216
                 89*******************98766 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.7e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 +F+ +Dkd dG +++eEl  +++
  CDO71695.1 314 LFENHDKDQDGALNKEELEELFS 336
                 8*****************99987 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-05    0.0084      12     134 ..       2     126 ..       1     154 [. 0.68
   2 !   20.6   0.0   7.3e-07   0.00025      17     154 ..     420     559 ..     408     570 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-05
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEE...EEEETTEEEEEEEE-SSGGGGGGGGGGCTT..ESEEEEEEETT-.CTTHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvttvPTigfnve...eleiknlkftvwDvGGqeklRplWknYfek..tdavifvvDsad.reRleeakeeL 104
                 ++++rill+G ++ GK+Ti++ l +e++v  v  i ++v    e++ +n++  + D G   +  +  ++  +k  +  v++ +D  +  +R+ +     
  CDO71695.1   2 RRDVRILLVGDEGVGKSTIVTSLIKESFVPRVQHIVPEVTippEVTPENVTTYIVDSGCGPNDQHHLESEIRKahVICVVYAIDNPNsFDRIPTYWL-- 98 
                 5899********************99887655544444432237899*********99665555555555555014556788886441467665432.. PP

                 HHHCTSGCCTTSEEEEEEE-TTSTTSS-HH CS
         Arf 105 kalleeeelkevallvlaNKqDlpealsee 134
                    +++    +v++++++NK+Dl++   ++
  CDO71695.1  99 -PYFRQ-LGVNVPVILVGNKIDLRGGEVTN 126
                 .22222.23479999999999998754444 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 7.3e-07
                 EEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE..EEEEEE..TTEEEEEEEE-SSGGGGGGGG.GGCTTESEEEEEEETT-CTTHHHHHHHHHHHCT CS
         Arf  17 illlGLDnaGKtTilkklkleelvt.tvPTigfn..veelei..knlkftvwDvGGqeklRplWk.nYfektdavifvvDsadreRleeakeeLkalle 109
                 + + G  ++GKt +l  +  + +++   PT  +n  v+++ i   +  + + + G + ++  l + + ++  d++++v Ds+d++ ++     +++l +
  CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGKPFSQvYEPTKKMNsvVNSVDIdgSEKYLVLQEFGSRYEAEMLRNpKKTDLADVIVYVYDSSDTNSFSY----ISNLRQ 514
                 45668889**************998578**9988446788884344557778889887776665424567789***********98875....678999 PP

                 SGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEE CS
         Arf 110 eeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiq 154
                 +  l +++ l +a K Dl  al+++e++  +  ++l+ + ++ + 
  CDO71695.1 515 QYSLDHIPTLFVATKSDLDLALQRHEVQPDVYCRRLSLQAPIAVS 559
                 ****************************99999998877777664 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-06   0.00037       2      25 ..     191     214 ..     190     218 .. 0.89
   2 !   16.0   0.1   1.8e-05    0.0061       5      27 ..     314     336 ..     310     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 l++iF++ D+++dG +d  E+ e+
  CDO71695.1 191 LRRIFKLCDTNKDGVLDAAELNEF 214
                 799*****************9887 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.8e-05
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +F+  DkD+dG +++eE+ el++
  CDO71695.1 314 LFENHDKDQDGALNKEELEELFS 336
                 7999***************9986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-05    0.0051       1      83 [.       6      82 ..       6     116 .. 0.66
   2 !   12.9   0.0   0.00026     0.087       3     114 .]     421     529 ..     419     529 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-05
                EEEEEESTTSSHHHHHHHHHTS..TEEESSS.TTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEE CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge..kaivsdk.pgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvv 83
                ++++vG   vGKSt++ +l++e  + +v+++ p +T+ ++       +   ++vD     +   +++ l+ +++   +a++i++v 
  CDO71695.1  6 RILLVGDEGVGKSTIVTSLIKEsfVPRVQHIvPEVTIPPEVTPE---NVTTYIVDSGCGPN---DQHHLESEIR---KAHVICVVY 82
                689******************97667997752799999987743...56789999876233...3444555444...344444443 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00026
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEE..EEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgtTrdinegr..vklkg.keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldee 96 
                  + G   +GK++L++a  g+  ++v      T+++n     v+++g +++ ++   G   +  e ++l++  +  + ad+i++v d+s +    +  + 
  CDO71695.1 421 YVCGAAGSGKTSLLRAFAGKpFSQV---YEPTKKMNSVVnsVDIDGsEKYLVLQEFG---SRYEAEMLRNPKK-TDLADVIVYVYDSSdT----NSFSY 508
                 688999*************843444...44455555552002223334444444444...2223445555555.4558********7731....22233 PP

                 HHHHHHH...TTSEEEEEEES CS
    MMR_HSR1  97 leellee...akkplilvlnk 114
                 + +l+++   +++p+++v++k
  CDO71695.1 509 ISNLRQQyslDHIPTLFVATK 529
                 333333344467788877776 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.8e-05    0.0061       2      24 ..     192     214 ..     191     215 .. 0.88
   2 !   13.8   0.3   8.7e-05     0.029       6      24 ..     316     334 ..     313     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +  F+  D+N+DG +++ EL ++
  CDO71695.1 192 RRIFKLCDTNKDGVLDAAELNEF 214
                 5679999*************987 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.7e-05
                 HHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktl 24 
                 +  D+++DG ++keEL++l
  CDO71695.1 316 ENHDKDQDGALNKEELEEL 334
                 555*************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00042      0.14      27      46 ..       7      26 ..       2      41 .. 0.85
   2 !   12.2   0.0   0.00053      0.18      26      45 ..     419     438 ..     407     456 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00042
      AAA_16 27 vllsGesGvGKsslvrellr 46
                +ll+G+ GvGKs++v++l +
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIK 26
                89*************88765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00053
      AAA_16  26 lvllsGesGvGKsslvrell 45 
                 l+++ G++G+GK+sl+r+++
  CDO71695.1 419 LCYVCGAAGSGKTSLLRAFA 438
                 67899************997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0045       1.5       8      56 ..       7      51 ..       2     121 .. 0.69
   2 !   14.2   0.0   0.00012     0.039       8      51 ..     420     465 ..     417     506 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0045
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdl 56
                ++++G  G+GK+t +  l ++         +  ++v +vt+p + +++++
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKESF----VP-RVQHIVpEVTIPPEVTPENV 51
                789***********999988751....11.12222246666666555555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.00012
      AAA_22   8 lvvtGesGtGKTtllrrlleq.ldeeakaeeerpevv.fvtlpsst 51 
                 ++v+G +G+GKT llr ++ + + ++++++++  +vv +v++ +s+
  CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGKpFSQVYEPTKKMNSVVnSVDIDGSE 465
                 79***************99762455555555444444477766666 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.2e-05    0.0075      24      48 ..     192     216 ..     190     218 .. 0.93
   2 !    7.9   0.2    0.0079       2.7      25      46 ..     313     334 ..     307     337 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-05
  EF-hand_10  24 ekLFkkcDkSksgrLegeEieeFyk 48 
                 + +Fk cD+ k+g L+  E++eF +
  CDO71695.1 192 RRIFKLCDTNKDGVLDAAELNEFQR 216
                 579********************76 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0079
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeF 46 
                  LF + Dk ++g L+ eE+ee 
  CDO71695.1 313 VLFENHDKDQDGALNKEELEEL 334
                 69*****************986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00078      0.26       1      31 [.       7      37 ..       7      53 .. 0.91
   2 ?    7.6   0.0     0.011       3.7       3      24 ..     422     443 ..     420     449 .. 0.90
   3 ?    4.4   0.0       0.1        34     129     167 ..     491     529 ..     445     530 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00078
                EEEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnpt 31
                i++vG+   GKS+++ +L++e + pr + ++
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKESFVPRVQHIV 37
                789**********************988776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.011
                 EEEBTTTTHHHHHHHHHTS--S CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedil 24 
                 v+G+  sGK+S+l a  g+++ 
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPFS 443
                 9*****************9985 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.1
                 TEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 129 adiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 ad+i++v +++   s s  ++l++++  ++  t++v tk
  CDO71695.1 491 ADVIVYVYDSSDTNSFSYISNLRQQYSLDHIPTLFVATK 529
                 89***********************************98 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   0.00021      0.07       1      69 [.       7      72 ..       7     100 .. 0.78
   2 ?    8.0   0.0     0.012       3.9       3      21 ..     422     440 ..     421     495 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00021
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss 69
                Ill G  GvGK+t+   L k+  f+ +++++++e  +  ev+pe  + +  +++  +  + + + e+  
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKE-SFVPRVQHIVPEVTIPPEVTPE--NVTTYIVDSGCGPNDQHHLESEI 72
                89****************776.579999****999999999999..88887777777777777777654 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.012
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                 ++G++G+GKt+l ++ + +
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGK 440
                 89***********998554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0     0.001      0.35      12      34 ..       5      27 ..       1      56 [. 0.90
   2 !    9.7   0.0    0.0033       1.1      16      34 ..     422     440 ..     418     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.001
                SEEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagl 34
                 ++ +vG+ G GKSt++  l+++
  CDO71695.1  5 VRILLVGDEGVGKSTIVTSLIKE 27
                5789*************999887 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0033
                 EEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagl 34 
                 + G  G+GK++Ll+++ag+
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGK 440
                 78**************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00076      0.26     102     123 ..       7      28 ..       2      41 .. 0.80
   2 ?    1.0   0.0         1   3.5e+02      18      67 ..      77     128 ..      65     157 .. 0.73
   3 ?    5.9   0.0     0.033        11     102     127 ..     420     445 ..     397     457 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00076
                  EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpel 123
                  ++lvG  GvGKSt++ +l+ e 
   CDO71695.1   7 ILLVGDEGVGKSTIVTSLIKES 28 
                  689*************999864 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1
                  EEEEEEESTTTT--HHHHHHHHHHHHHTT-..EEEEEEE-GGG--HHHHHHH CS
  RsgA_GTPase  18 qllivvslkepelslnlldrfLvlaeekgi..epvivlnKiDlleeeeelee 67 
                   +++v ++++p+   ++ +  L  + + g+  ++++v nKiDl   e + e+
   CDO71695.1  77 VICVVYAIDNPNSFDRIPTYWLPYFRQLGVnvPVILVGNKIDLRGGEVTNEA 128
                  56788888888877777777888888877732566677****9877764444 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.033
                  EEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelkt 127
                  + ++G  G GK++L+ a++++   ++
   CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGKPFSQV 445
                  5789************9998755555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0045       1.5       2      28 ..       7      33 ..       7     115 .. 0.69
   2 !   10.4   0.0    0.0016      0.54       1      22 [.     419     440 ..     419     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0045
      AAA_33  2 vllvGlpGsGKstlaerllkklgavll 28
                +llvG  G+GKst +++l+k+  + ++
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKESFVPRV 33
                689****************99874333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0016
      AAA_33   1 lvllvGlpGsGKstlaerllkk 22 
                 l +++G++GsGK+ l++  + k
  CDO71695.1 419 LCYVCGAAGSGKTSLLRAFAGK 440
                 6799************988755 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00025     0.085      24      39 ..       6      21 ..       1      27 [. 0.83
   2 ?    6.3   0.0     0.023       7.7      26      42 ..     421     437 ..     407     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00025
      AAA_29 24 atlltGpsGsGKSTll 39
                 +ll+G+ G+GKST++
  CDO71695.1  6 RILLVGDEGVGKSTIV 21
                589************8 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.023
      AAA_29  26 lltGpsGsGKSTllDAi 42 
                  + G+ GsGK++ll A+
  CDO71695.1 421 YVCGAAGSGKTSLLRAF 437
                 578**********9775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00092      0.31       1      29 [.       7      35 ..       7      62 .. 0.83
   2 ?    8.0   0.0     0.011       3.7       2      22 ..     421     445 ..     420     489 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00092
                EEEESSTTSSHHHHHHHHHHHHTHEEEEE CS
         AAA  1 vllyGppGtGKTllakavakelgveflei 29
                +ll+G  G+GK++++ +++ke+ v+ ++ 
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKESFVPRVQH 35
                69******************987665554 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.011
                 EEESSTTSSHHHHHHHHHHH....H CS
         AAA   2 llyGppGtGKTllakavake....l 22 
                 +++G  G GKT+l +a a +    +
  CDO71695.1 421 YVCGAAGSGKTSLLRAFAGKpfsqV 445
                 789***************9844330 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0066       2.2       3      23 ..       7      27 ..       5      77 .. 0.90
   2 !   10.2   0.0    0.0015      0.51       3      21 ..     420     438 ..     419     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0066
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                ++l G+ G+GK+t + +l+ +
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKE 27
                799*************99876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0015
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 + + G+aGsGKT Ll+ +a
  CDO71695.1 420 CYVCGAAGSGKTSLLRAFA 438
                 5688***********9987 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.019       6.3      51      79 ..       3      31 ..       1      37 [. 0.84
   2 !   11.7   0.0   0.00048      0.16       4      95 ..     405     496 ..     378     510 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.019
        VirE 51 fDfvlvLvGkqgsgKstfleklgeewftd 79
                 D+ + LvG+ g+gKst+++ l +e f+ 
  CDO71695.1  3 RDVRILLVGDEGVGKSTIVTSLIKESFVP 31
                577899****************8887765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00048
        VirE   4 svewdgvprvetlfidyl.GaedstytravsklflvaavarvlePgiKfDfvlvLvGkqgsgKstfleklgeewftdslksvedkdavekiqg 95 
                 +v++++ +  +++f+ y+ Ga  s  t  + + f     ++v+eP  K+  v+  v   gs K  +l+++g+ + ++ l++ +  d + +i  
  CDO71695.1 405 KVDRRKGKSTRNVFLCYVcGAAGSGKTSLL-RAFAGKPFSQVYEPTKKMNSVVNSVDIDGSEKYLVLQEFGSRYEAEMLRNPKKTDLADVIVY 496
                 566777777777777764377777777776.77777789********************************************9999998865 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00017     0.057       5      35 ..       5      35 ..       2      60 .. 0.79
   2 ?    4.8   0.0     0.042        14       8      52 ..     421     465 ..     416     492 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
                EEEEEEEBTTSSCCCCCCTTSSSS------- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekl 35
                + +++vG++g+Gk+t++ +l++++ +++ ++
  CDO71695.1  5 VRILLVGDEGVGKSTIVTSLIKESFVPRVQH 35
                679*******************998887554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.042
                 EEEEBTTSSCCCCCCTTSSSS------------------S-EEEE CS
      Septin   8 mvvGesglGkttlintlfetdlieeekleeasekkkktveikkkk 52 
                  v+G+ g Gkt+l++++  +   +  + +++ ++  ++v+i+ ++
  CDO71695.1 421 YVCGAAGSGKTSLLRAFAGKPFSQVYEPTKKMNSVVNSVDIDGSE 465
                 69***************9999988877777777888888887433 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.21        71       2      17 ..      10      25 ..       9      35 .. 0.89
   2 ?    2.5   0.0       0.3     1e+02     119     186 ..      73     143 ..      64     172 .. 0.66
   3 ?    7.1   0.1     0.012       4.1       1      17 [.     422     438 ..     422     460 .. 0.74
   4 ?    3.2   0.1      0.18        62     120     170 ..     487     533 ..     476     578 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.21
  ATP_bind_1  2 vGpaGsGKttfvgals 17
                vG  G+GK+t+v +l+
  CDO71695.1 10 VGDEGVGKSTIVTSLI 25
                7999********9987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.3
  ATP_bind_1 119 esefalvvvyLvDsqrltd..ptkfisgllsalsamlrlelPhvvvlnkfDllkek......lekeleffedveal 186
                  + + ++vvy +D + + d  pt ++          l +++P + v nk+Dl   +      +++ +  +++++++
  CDO71695.1  73 RKAHVICVVYAIDNPNSFDriPTYWLPY-----FRQLGVNVPVILVGNKIDLRGGEvtnealEDEIIPIMNEFKEV 143
                 4566789999999887777555555554.....7778999***********9665553333333333444444444 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.012
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 v+G aGsGKt++ +a++
  CDO71695.1 422 VCGAAGSGKTSLLRAFA 438
                 89**********99864 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.18
  ATP_bind_1 120 s.efalvvvyLvDsqrltdptkfisgllsalsamlrl.elPhvvvlnkfDllk 170
                 + + a v+vy+ Ds   ++  ++is+    l+  ++l ++P++ v +k Dl +
  CDO71695.1 487 KtDLADVIVYVYDSSDTNS-FSYISN----LRQQYSLdHIPTLFVATKSDL-D 533
                 45778899******98766.99****....444444426999999999999.3 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.019       6.4       1      23 [.       6      32 ..       6      77 .. 0.71
   2 !   10.5   0.0    0.0016      0.54       3      68 ..     421     486 ..     419     529 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.019
      AAA_28  1 kivitGgestGKTtlleaLaar....g 23
                +i ++G e+ GK+t++  L ++     
  CDO71695.1  6 RILLVGDEGVGKSTIVTSLIKEsfvpR 32
                799*************99985544442 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0016
      AAA_28   3 vitGgestGKTtlleaLaargypvvpEaareileeklakgedalpwvedllafaervleeqleeea 68 
                 ++ G+ ++GKT+ll+a+a + ++ v E+  ++ +     + d ++++  l +f +r ++e l++ +
  CDO71695.1 421 YVCGAAGSGKTSLLRAFAGKPFSQVYEPTKKMNSVVNSVDIDGSEKYLVLQEFGSRYEAEMLRNPK 486
                 789***************887777777666665555544444444444455555555555555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.099        33       3      24 ..       6      27 ..       4      36 .. 0.87
   2 !   12.4   0.0   0.00029     0.097       6      55 ..     422     475 ..     417     539 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.099
   PduV-EutP  3 killiGkvgsGKttLtqalkge 24
                +ill+G  g+GK t+  +l +e
  CDO71695.1  6 RILLVGDEGVGKSTIVTSLIKE 27
                89************99988766 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00029
   PduV-EutP   6 liGkvgsGKttLtqalkgeelk..YkktqaiefsdeviDtPG..eylenrklys 55 
                 + G+ gsGKt+L +a+ g+ ++  Y+ t+ ++   + +D  G  +yl  +++ s
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPFSqvYEPTKKMNSVVNSVDIDGseKYLVLQEFGS 475
                 679***************977444*******98877755555227887777644 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00094      0.32       3      23 ..       5      26 ..       3      33 .. 0.84
   2 ?    6.0   0.0     0.025       8.6       7      28 ..     422     443 ..     419     517 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00094
      AAA_24  3 lkiliyGpsgiGKTtlakel.g 23
                ++il++G++g+GK+t++++l +
  CDO71695.1  5 VRILLVGDEGVGKSTIVTSLiK 26
                79***************99854 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.025
      AAA_24   7 iyGpsgiGKTtlakelgpkplf 28 
                 + G +g+GKT+l++ +  kp+ 
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPFS 443
                 78*************9777765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0047       1.6      22      42 ..       3      23 ..       1      29 [. 0.88
   2 ?   -2.5   0.0       6.3   2.1e+03     269     281 ..     107     119 ..     102     149 .. 0.83
   3 !    7.5   0.0    0.0059         2       7      44 ..     400     438 ..     394     505 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
                .EEEEEEEESTTSSHHHHHHH CS
     G-alpha 22 revkllllGqseSGKsTilkq 42
                r+v++ll+G ++ GKsTi+ +
  CDO71695.1  3 RDVRILLVGDEGVGKSTIVTS 23
                68****************875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.3
                 TSEEEEEEE-HHH CS
     G-alpha 269 ntpiiLflnKlDi 281
                 n+p+iL+ nK+D+
  CDO71695.1 107 NVPVILVGNKIDL 119
                 89*********97 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0059
                 XXXXXXXXXXXXXE...EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha   7 idkslkaerkarkk.krevkllllGqseSGKsTilkqlk 44 
                 +++  k +r++ k+ ++ +  +++G+++SGK+++l+ + 
  CDO71695.1 400 VTRPRKVDRRKGKStRNVFLCYVCGAAGSGKTSLLRAFA 438
                 55666667667677566678899*************986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     0.003         1       1      21 [.       7      27 ..       7      54 .. 0.89
   2 ?    6.8   0.0     0.026       8.8       1      26 [.     420     445 ..     420     480 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.003
  RNA_helicase  1 iwlyGpsgeGKStlakeLaka 21
                  i+l+G++g+GKSt++++L+k+
    CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKE 27
                  6899*************9986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.026
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++++G++g GK++l + +a +  +++
    CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGKPFSQV 445
                   599************99886655555 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.012         4       5      84 ..       6      85 ..       2      94 .. 0.72
   2 !    8.8   0.0     0.003         1       8      86 ..     422     501 ..     413     542 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
                EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSqessaalkv.ksekgskltliDfPGheklrqklleklkaksslkglvfvvD 84
                ++llvG    GK ++ t L ++s+ + v  + ++++     + ++ ++ ++D        q+ le+ + k+++  +v+ +D
  CDO71695.1  6 RILLVGDEGVGKSTIVTSLIKESFVPRVQHIVPEVTIPPeVTPENVTTYIVDSGCGP-NDQHHLESEIRKAHVICVVYAID 85
                79************************9999988777655224566666677754333.33444444466666777777776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.003
                 EE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETT CS
       SRPRB   8 lvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDSt 86 
                 + G   sGKTsl+     + + + +      +s++++v + +gs++ l+      +   ++l + k+ + +  +v+v DS+
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPFSQVYEPTkkMNSVVNSV-DIDGSEKYLVLQEFGSRYEAEMLRNPKKTDLADVIVYVYDSS 501
                 57999************997666665543256666666.7789999998888889999******999999*********97 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0    0.0002     0.069      32      56 ..       3      27 ..       1      57 [. 0.80
   2 ?    2.9   0.0       0.2        67      36      56 ..     420     440 ..     412     459 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0002
       AAA_7 32 nkkpvllvGptGtGKtviikdllkk 56
                ++  +llvG++G+GK++i+++l+k+
  CDO71695.1  3 RDVRILLVGDEGVGKSTIVTSLIKE 27
                67789****************8775 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
       AAA_7  36 vllvGptGtGKtviikdllkk 56 
                 + ++G +G+GKt++++ +  k
  CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGK 440
                 5689*********99986654 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0021      0.73      44      81 ..     179     216 ..     158     237 .. 0.84
   2 ?    5.9   0.0     0.046        16      59      81 ..     314     336 ..     300     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0021
  SPARC_Ca_bdg  44 eeeknlkeckepvawkFsklDtnsdkvlsksELaplra 81 
                    e+  +kec+ +++  F+  Dtn+d+vl+ +EL++ + 
    CDO71695.1 179 REHVLKKECVAALRRIFKLCDTNKDGVLDAAELNEFQR 216
                   45556788999999999999999999999999999876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.046
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplra 81 
                    F++ D+++d+ l+k+EL++l +
    CDO71695.1 314 LFENHDKDQDGALNKEELEELFS 336
                   69999**************9865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0017      0.58      56      76 ..       7      27 ..       3      37 .. 0.88
   2 ?    4.5   0.0      0.05        17      49      74 ..     410     438 ..     404     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
      DUF815 56 vLLwGarGtGKSslvkallne 76
                +LL+G+ G+GKS++v +l++e
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKE 27
                8***************99987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.05
      DUF815  49 eglpannvLL...wGarGtGKSslvkall 74 
                 +g++++nv+L    Ga G+GK sl++a  
  CDO71695.1 410 KGKSTRNVFLcyvCGAAGSGKTSLLRAFA 438
                 67788888874336************986 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00025     0.084      54      79 ..       1      26 [.       1      52 [. 0.80
   2 ?    1.5   0.0      0.39   1.3e+02      38      87 ..     398     447 ..     387     461 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
                BCSS-EEEEEESSTSTHHHHHHHHHH CS
         MCM 54 lrgdinvllvgdpgtaKsqlLkyvek 79
                +r d+ +llvgd g++Ks+++ ++ k
  CDO71695.1  1 MRRDVRILLVGDEGVGKSTIVTSLIK 26
                689*****************998743 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.39
                 HHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEE CS
         MCM  38 lqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravyt 87 
                 lq+  + k  +++++++r      ++g  g +K+ lL++ +     +vy 
  CDO71695.1 398 LQVTRPRKVDRRKGKSTRNVFLCYVCGAAGSGKTSLLRAFAGKPFSQVYE 447
                 55555555555566667777777789************988666666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00096      0.33      32      53 ..       3      24 ..       1      28 [. 0.89
   2 ?    3.3   0.0      0.15        52      35      53 ..     419     437 ..     394     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00096
      AAA_25 32 agelallaGapgtGKttlaldl 53
                ++  +ll+G++g+GK+t++++l
  CDO71695.1  3 RDVRILLVGDEGVGKSTIVTSL 24
                67889**************998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
      AAA_25  35 lallaGapgtGKttlaldl 53 
                 l+ ++Ga g+GKt l+   
  CDO71695.1 419 LCYVCGAAGSGKTSLLRAF 437
                 78899********997554 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.038        13      31      47 ..     194     210 ..     189     218 .. 0.84
   2 ?    7.2   0.0     0.014       4.6      29      48 ..     312     331 ..     305     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.038
   EF-hand_8  31 lfrefDtdgdGkisfeE 47 
                 +f++ Dt++dG+++  E
  CDO71695.1 194 IFKLCDTNKDGVLDAAE 210
                 8************9877 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
   EF-hand_8  29 dilfrefDtdgdGkisfeEF 48 
                 ++lf  +D d+dG++++eE 
  CDO71695.1 312 TVLFENHDKDQDGALNKEEL 331
                 78999*************96 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0093       3.2       6      40 ..       7      38 ..       3      66 .. 0.64
   2 ?    5.8   0.0     0.035        12       5      61 ..     419     477 ..     415     481 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0093
  Ploopntkinase3  6 iylvGqPGaGkstlmaeltk.gfdrskveqeeetvp 40
                    i lvG+ G Gkst++++l k +f+    +    +vp
      CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKeSFVPRVQH----IVP 38
                    88**************9986244433332....333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.035
  Ploopntkinase3   5 liylvGqPGaGkstlmaelt.kgfdrskveqee.etvphdvlvdrttGevvgaelGkrr 61 
                     l y+ G+ G+Gk+ l+ +++ k+f++    +++ + v + v +d  +   v  e+G r 
      CDO71695.1 419 LCYVCGAAGSGKTSLLRAFAgKPFSQVYEPTKKmNSVVNSVDIDGSEKYLVLQEFGSRY 477
                     88**********99987764278887776666667788888888888888888888775 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       5.6   1.9e+03      27      44 ..      58      75 ..      54      83 .. 0.80
   2 ?    3.5   0.0      0.18        61      43      58 .]     103     118 ..      99     118 .. 0.85
   3 !    8.2   0.1    0.0062       2.1      12      37 ..     489     518 ..     488     531 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.6
        NOG1 27 cgysleeQlsLleeikel 44
                +g+  ++Q +L  ei++ 
  CDO71695.1 58 SGCGPNDQHHLESEIRKA 75
                677789999999999975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.18
        NOG1  43 elfankpvivvlnKiD 58 
                 +l  n+pvi v nKiD
  CDO71695.1 103 QLGVNVPVILVGNKID 118
                 566789*********9 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0062
        NOG1  12 hladavlFllDpseecg....ysleeQlsL 37 
                  lad+++++ D s +       +l +Q+sL
  CDO71695.1 489 DLADVIVYVYDSSDTNSfsyiSNLRQQYSL 518
                 699***********9984444456666665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.003         1      23      79 ..       7      62 ..       2      82 .. 0.75
   2 ?    3.8   0.0     0.081        27      20      39 ..     417     436 ..     405     456 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.003
                EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilkeLsls 79
                + lvG  GvGK+t++++ +++ + v +   +v  v++  +++ e+++  i+   +  
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKE-SFVPRVQHIVPEVTIPPEVTPENVTTYIVDSGCGP 62
                779*****************9.88888888888888888888888888887765555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.081
                 SEEEEEEESTTSSHHHHHHH CS
      NB-ARC  20 slvvalvGmgGvGKttlakq 39 
                  ++  + G +G+GKt l++ 
  CDO71695.1 417 VFLCYVCGAAGSGKTSLLRA 436
                 5667899*********9875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.33   1.1e+02       8      34 ..      14      35 ..      10      62 .. 0.68
   2 ?   10.1   0.0    0.0015       0.5       2      21 ..     421     440 ..     420     464 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.33
  Viral_helicase1  8 GcGKStlirkllrtsliltvnrptael 34
                     G GKSt++ +l+++s      +p++  
       CDO71695.1 14 GVGKSTIVTSLIKES-----FVPRVQH 35
                     89***********94.....3333333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0015
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      +v G++G+GK++l+r ++ +
       CDO71695.1 421 YVCGAAGSGKTSLLRAFAGK 440
                      688*************9987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1       0.1        34      23      37 ..       8      22 ..       7      25 .. 0.87
   2 ?    8.0   0.0     0.011       3.8      24      40 ..     422     438 ..     416     525 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.1
      AAA_23 23 lItGpNGaGKTTild 37
                l++G+ G GK+Ti+ 
  CDO71695.1  8 LLVGDEGVGKSTIVT 22
                89***********86 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.011
      AAA_23  24 ItGpNGaGKTTildAik 40 
                 ++G  G+GKT++l+A+ 
  CDO71695.1 422 VCGAAGSGKTSLLRAFA 438
                 6899***********86 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0023      0.79       2      21 ..       7      26 ..       6      79 .. 0.81
   2 ?    2.1   0.0      0.53   1.8e+02       5      20 ..     423     438 ..     420     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0023
                EEEE--SSSSHHHHHHHGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaa 21
                +lLvG+ G+gKs+++ +l +
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIK 26
                79************998754 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.53
                 E--SSSSHHHHHHHGG CS
       AAA_5   5 vGppGtgKselaerla 20 
                  G+ G+gK++l + +a
  CDO71695.1 423 CGAAGSGKTSLLRAFA 438
                 699*********9987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.055        19      42      60 ..       7      25 ..       4      31 .. 0.93
   2 ?    6.9   0.0      0.01       3.4      44      59 ..     422     437 ..     396     438 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.055
                  EEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLi 60
                  +l++G  g GKSt + +Li
    CDO71695.1  7 ILLVGDEGVGKSTIVTSLI 25
                  799***************9 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.01
                   EE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  44 vaGatgsGKStalntL 59 
                   v+Ga gsGK+  l+++
    CDO71695.1 422 VCGAAGSGKTSLLRAF 437
                   9************986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.14        47       3      37 ..       7      41 ..       5      77 .. 0.74
   2 ?   -1.1   0.0       3.6   1.2e+03     144     164 ..     111     131 ..      55     144 .. 0.70
   3 ?    7.2   0.0      0.01       3.5       4      21 ..     421     438 ..     418     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.14
                EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW  3 tvltGflGsGKTtLlnhllenraglklavivNefg 37
                ++l+G  G GK+t++++l++++   ++  iv e+ 
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKESFVPRVQHIVPEVT 41
                5789999************9887777777776655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.6
                 EEEEE-HHHHCHC..HHHHHH CS
        cobW 144 llvlnKtDlldeealleklee 164
                 +lv nK+Dl   e + e+le+
  CDO71695.1 111 ILVGNKIDLRGGEVTNEALED 131
                 677888888777733355444 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.01
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  ++G  GsGKT+Ll++  
  CDO71695.1 421 YVCGAAGSGKTSLLRAFA 438
                 6899**********9876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.019       6.5      22      45 ..       7      30 ..       1      39 [. 0.84
   2 ?    5.0   0.0      0.07        24      22      42 ..     420     440 ..     400     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.019
                EEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 22 ilLeGdLGaGKTtlvrglakalgv 45
                ilL Gd G+GK+t+v +l+k+  v
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKESFV 30
                99****************998655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.07
                 EEEEESTTSSHHHHHHHHHHH CS
        TsaE  22 ilLeGdLGaGKTtlvrglaka 42 
                  +  G  G+GKT l r++a +
  CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGK 440
                 5678999*********99865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.027       9.1      17      40 ..       5      28 ..       2      38 .. 0.84
   2 ?    5.0   0.0     0.037        13      18      38 ..     419     439 ..     404     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.027
  Zeta_toxin 17 klillgGqpGAGKselaellkdel 40
                + ill+G  G GKs++ + l +e 
  CDO71695.1  5 VRILLVGDEGVGKSTIVTSLIKES 28
                679*************99998875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.037
  Zeta_toxin  18 lillgGqpGAGKselaellkd 38 
                 l  + G+ G+GK++l+++++ 
  CDO71695.1 419 LCYVCGAAGSGKTSLLRAFAG 439
                 56789***********99876 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.019       6.5      37      57 ..       6      26 ..       1      46 [. 0.85
   2 ?    4.2   0.0     0.075        25      38      72 ..     420     454 ..     408     489 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.019
        TniB 37 nlllvGdsnnGKtmivekFar 57
                 +llvGd  +GK++iv +  +
  CDO71695.1  6 RILLVGDEGVGKSTIVTSLIK 26
                689************987655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.075
        TniB  38 lllvGdsnnGKtmivekFarlhppekdedaekvpv 72 
                 ++++G    GKt++++ Fa +  ++  e ++k++ 
  CDO71695.1 420 CYVCGAAGSGKTSLLRAFAGKPFSQVYEPTKKMNS 454
                 6799**************98776665444444433 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.013       4.4       6      32 ..       8      34 ..       5      60 .. 0.83
   2 ?    2.9   0.0      0.32   1.1e+02       7      27 ..     422     442 ..     418     503 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.013
      AAA_14  6 vitGaRrvGKTtllkqlikellvkkes 32
                +++G   vGK+t++  like++v++ +
  CDO71695.1  8 LLVGDEGVGKSTIVTSLIKESFVPRVQ 34
                6788889*************9965544 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.32
      AAA_14   7 itGaRrvGKTtllkqlikell 27 
                 + Ga  +GKT ll+ ++ + +
  CDO71695.1 422 VCGAAGSGKTSLLRAFAGKPF 442
                 779999*********998776 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     0.001      0.34       2      27 ..       6      30 ..       5      87 .. 0.77
   2 ?   -1.0   0.0       2.7   9.1e+02     134     156 ..     179     201 ..     160     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.001
                EEEEESSTTSSHHHHHHHHHTS--SS CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkkaFe 27
                +i+lvG  g+GkS+ + s+++++ F 
  CDO71695.1  6 RILLVGDEGVGKSTIVTSLIKES-FV 30
                8*****************99764.55 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.7
                 HHHHHHHHH-HHHHHHHHHTTTS CS
        AIG1 134 ledylsksspeaLkevlkecgnR 156
                  e+ l+k++  aL++++k c+  
  CDO71695.1 179 REHVLKKECVAALRRIFKLCDTN 201
                 46789999999999999999754 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.75   2.5e+02      23      43 ..       7      27 ..       2      35 .. 0.85
   2 ?   -0.3   0.0       2.5   8.6e+02     200     228 ..     310     343 ..     302     346 .. 0.81
   3 ?    6.8   0.0     0.017       5.8      22      43 ..     419     440 ..     409     520 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.75
    ATPase_2 23 yfiYGpegsGKtaLlkeiien 43
                +++ G eg+GK++++  +i++
  CDO71695.1  7 ILLVGDEGVGKSTIVTSLIKE 27
                56779*********9999986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.5
    ATPase_2 200 flkegfkel.eel....skedfeeiyryvGGkPk 228
                 fl  +f++  +++    +ke++ee+++   G+P+
  CDO71695.1 310 FLTVLFENHdKDQdgalNKEELEELFSTSPGNPW 343
                 666777777656677789**************97 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.017
    ATPase_2  22 iyfiYGpegsGKtaLlkeiien 43 
                   ++ G  gsGKt+Ll+ ++ +
  CDO71695.1 419 LCYVCGAAGSGKTSLLRAFAGK 440
                 46889************98755 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.48   1.6e+02      22      38 ..       8      24 ..       2      30 .. 0.81
   2 ?    7.7   0.0    0.0078       2.6      20      38 ..     419     437 ..     412     443 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.48
      AAA_30 22 vltGpAGtGKttalkal 38
                +l+G  G GK+t++++l
  CDO71695.1  8 LLVGDEGVGKSTIVTSL 24
                689999******99876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0078
      AAA_30  20 vavltGpAGtGKttalkal 38 
                 ++ + G+AG+GKt +l+a 
  CDO71695.1 419 LCYVCGAAGSGKTSLLRAF 437
                 56789***********987 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.011       3.8      21      46 ..       3      28 ..       1      45 [. 0.83
   2 ?   -0.9   0.0       3.5   1.2e+03      25      42 ..     420     437 ..     404     474 .. 0.76
   3 ?   -0.1   0.0       1.9   6.5e+02     137     161 ..     524     548 ..     513     553 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.011
                     SSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat 21 tdlsvlitGesGtGKellaraiheas 46
                      d+++l++G+ G+GK+++ +++ ++s
       CDO71695.1  3 RDVRILLVGDEGVGKSTIVTSLIKES 28
                     6789************9998877655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.5
                      EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  25 vlitGesGtGKellarai 42 
                      + + G  G+GK+ l ra 
       CDO71695.1 420 CYVCGAAGSGKTSLLRAF 437
                      568999*****9887765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.9
                      EEEEESS-HHHHHHTTSS-HHHHHH CS
  Sigma54_activat 137 iiaatnedleeaveegkfredLyyr 161
                      + +at++dl+ a+++++++ d+y r
       CDO71695.1 524 LFVATKSDLDLALQRHEVQPDVYCR 548
                      5689******************987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.11        36      27      43 ..       8      24 ..       4      71 .. 0.92
   2 ?    5.0   0.0     0.051        17      27      43 ..     421     437 ..     412     517 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.11
      AAA_15 27 vliGkNnsGKSsileal 43
                +l+G  ++GKS+i+  l
  CDO71695.1  8 LLVGDEGVGKSTIVTSL 24
                89***********9887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.051
      AAA_15  27 vliGkNnsGKSsileal 43 
                  ++G+ +sGK+s+l+a+
  CDO71695.1 421 YVCGAAGSGKTSLLRAF 437
                 689************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              53  [number of targets reported over threshold]
# CPU time: 0.84u 0.39s 00:00:01.23 Elapsed: 00:00:00.59
# Mc/sec: 2943.80
//
Query:       CDO71696.1  [L=461]
Description: hypothetical protein BN946_scf184915.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   41.3   0.0    3.1e-10   40.6   0.0    1.4  1  VWA        von Willebrand factor type A domain
    5.4e-06   27.0   0.0    1.3e-05   25.8   0.0    1.6  1  VWA_2      von Willebrand factor type A domain
    6.6e-05   22.8   0.0    0.00012   22.0   0.0    1.4  1  Med25_VWA  Mediator complex subunit 25 von Willebrand factor 


Domain annotation for each model (and alignments):
>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   5.2e-14   3.1e-10       1     149 [.      39     212 ..      39     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 5.2e-14
                 EEEEEEE-STTSCHHHHHHHHHHHHHHHHHHTB.....TTTTEEEEEEEESSS.......EEEEEETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHHH CS
         VWA   1 DivfvlDgSgsmgeenfekvkefikklveklev.....gpegtrvglvqfsse.......vktefslndysskeellsalnnlkysgggttntgkalky 87 
                 D+vfv D+ gs  ++ + ++ + i+++ ++++       +e+ r+gl+ + ++       v+  f +++  + +e++++l++l y++gg +   +a+ +
  CDO71696.1  39 DLVFVQDCTGSQ-GSYIASATKNIEEICNHIYKsgklqAREDLRIGLIAYRDHppqdhtyVTKNFGFSS--DVSEVHKNLSSL-YASGGGD-GPEAVTA 132
                 9**********7.99999*************9446778999999*******987555533333333333..779********7.6666666.6888888 PP

                 HHHHHHHHHGTSSTTSEEEEEEEES...............S--CSSHTHHHHHHHHGCTEEEEEEEE.....SSSHHHHHHH CS
         VWA  88 aleklfkssagaRenakkviilltd...............GksndgdpkeaaneakeqgikvfavGv.....gnadekelLn 149
                 al +++++  +  + a+k+++l++d               G ++++dp++ a+++ +qgi++f v++     g  + +++++
  CDO71696.1 133 ALAEALQMDWR--PTASKMVVLIADapphgigeygdgfdeGSPDGNDPLQIARTMAQQGITLFFVACepalsGYSYATDFYQ 212
                 88888777666..899*************99666665555555444********************9766664444444444 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.1e-09   1.3e-05       1     106 [.      40     156 ..      40     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.1e-09
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallksl........pgd.rvglvtfsdgp.......evlipltkdkakilnalrnleak...gggtnlaa 80 
                 lvfv D +gS +++      ++ a + +e++++++        ++d r+gl++++d+p       ++ +++++d +++ + l +l a+   +g   ++a
  CDO71696.1  40 LVFVQDCTGSQGSY------IASATKNIEEICNHIyksgklqaREDlRIGLIAYRDHPpqdhtyvTKNFGFSSDVSEVHKNLSSLYASgggDGPEAVTA 132
                 69999999999997......999999999999977777777766889*********765664444556677899************9966556688888 PP

       VWA_2  81 aLqlarkalkkrrkgekrvivlitDg 106
                 aL  a ++ ++   ++++ +vli+D+
  CDO71696.1 133 ALAEALQMDWRP--TASKMVVLIADA 156
                 888888877754..7*********96 PP

>> Med25_VWA  Mediator complex subunit 25 von Willebrand factor type A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     2e-08   0.00012       3     173 ..      35     195 ..      33     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-08
   Med25_VWA   3 skaadvvfvvegtaalgayleeLkteYilptleyfnggpieerdllsesastlyglvvykaadslpeplv.qlsgptssvekllqwldkiefsGggges 100
                  k  d+vfv + t   g y+ +  ++ i ++ ++++     + + l+++     gl+ y+ +    +++v + +g  s+v+++ ++l+++  sGgg + 
  CDO71696.1  35 RKMLDLVFVQDCTGSQGSYIASATKN-IEEICNHIYK----SGK-LQAREDLRIGLIAYRDHPPQDHTYVtKNFGFSSDVSEVHKNLSSLYASGGGDGP 127
                 56779999999999999999986554.5555555544....455.45556788999*99988866666541678999********************** PP

   Med25_VWA 101 valiaEGLatalqlfddlkqirepssavqkhciLvcnspPyrl....pvvesvkytgktaeqlaallaernislSii 173
                  a ++  La+alq+    +       ++ k ++L++  pP+ +       ++ +  g++  q+a+ +a+++i l  +
  CDO71696.1 128 EA-VTAALAEALQMDW--RP------TASKMVVLIADAPPHGIgeygDGFDEGSPDGNDPLQIARTMAQQGITLFFV 195
                 **.999******9833..22......46799************655545667777889**************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2842.43
//
Query:       CDO71697.1  [L=331]
Description: hypothetical protein BN946_scf184915.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-09   37.8   0.0    1.5e-09   37.3   0.0    1.1  1  TRI5      Trichodiene synthase (TRI5)
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.045   13.5   0.0    1.7  1  XylR_N    Activator of aromatic catabolism
       0.13   11.7   0.0        0.2   11.1   0.0    1.2  1  NAGLU_C   Alpha-N-acetylglucosaminidase (NAGLU) C-terminal do


Domain annotation for each model (and alignments):
>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.4e-13   1.5e-09      63     307 ..      76     328 ..      69     330 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.4e-13
        TRI5  63 avlrtisllvvycwakvpkevmvdvsiylayilvlddssdepstemksffedlikGreqkhpfwallnehlpnllrhygsfcalnilrstldffeGcwi 161
                 a++ t++++    ++ +p e +  v+ + ay + +dd  +    ++ + +  ++  ++ + p   +l   + ++  ++  + a +i  stl+ + G + 
  CDO71697.1  76 AIMDTSCTIAESGYSYMPPEYQRLVAYFTAYAVYVDDLGHRDLEALGQAIGRFVTRQPLEDPVLERLVGQFQEMYDYFPRLSADSINASTLEGLVGMYT 174
                 7889999999999999*******9**999***********999*******************************************************9 PP

        TRI5 162 eqy..nfgGfpGsddypsflrrlnglGgivaatlfpkakfde.rklfaeis.......savaqienqlvlvndllsfykeydderdqinlvsnlvtvdg 250
                 e    +    pG+  +p flr   g+    a   f k   d   + ++++         a  +  ++ ++  d+lsfyke   + ++ n +++ + +++
  CDO71697.1 175 EFSrgDAAVAPGAVLFPGFLRVQTGFARSYAHFNFAKGWRDPaDTSYLQLIpplvhfiNAAKRYAPPTTYRSDILSFYKEVV-KGENDNYIHQRAAAEQ 272
                 9761145678*******************9999999988885245666654111111134445668899***********98.5566789999999999 PP

        TRI5 251 itldealekltddtihackqlvavlkdkdpkvlatirafvhGyvtwhlcdaryrlre 307
                     + l +l ++t+   +q  + l   dp++ +  r+ + Gy+ +h+   ry l +
  CDO71697.1 273 KDPLKVLRELVEETLDHIRQA-ETLTSADPELSNLYRGHLMGYIEFHFRAKRYLLDD 328
                 99999**********999886.667889*************************9875 PP

>> XylR_N  Activator of aromatic catabolism
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.5e-06     0.045      21      59 ..       8      45 ..       6      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.5e-06
      XylR_N 21 RmlLlhaealgalrkelieslgverarglltrlGyasGa 59
                R  Ll++++l++++ke i+++ ++ +r +l r+Gy+ G 
  CDO71697.1  8 RSRLLEHSSLQTVQKETIAQV-QDIVRDFLCRVGYQLGS 45
                66799***************9.699***********996 PP

>> NAGLU_C  Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.4e-05       0.2      72     148 ..     227     303 ..     204     305 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTT-GGG CS
     NAGLU_C  72 awkllleaadelkssetyryDlvdvtrqvlanlakelykelvaaykakdaeafkkaskkllelledlDellatreef 148
                  + ++++aa++++   tyr D++ + ++v++   +++ ++ +aa ++  ++ +++  ++ l+ +++ ++l+++++e+
  CDO71697.1 227 PLVHFINAAKRYAPPTTYRSDILSFYKEVVKGENDNYIHQRAAAEQKDPLKVLRELVEETLDHIRQAETLTSADPEL 303
                 567899**************************************9999************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 1919.14
//
Query:       CDO71698.1  [L=380]
Description: hypothetical protein BN946_scf184915.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.9  16.7       0.05   13.6  16.7    1.1  1  TFIIA      Transcription factor IIA, alpha/beta subunit
      0.048   13.8  36.5      0.082   13.1  36.5    1.3  1  CCSAP      Centriole, cilia and spindle-associated
        1.2    9.0   3.9        2.8    7.8   3.9    1.7  1  cIII       cIII protein family


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  16.7   8.4e-06      0.05     115     326 ..     123     332 ..      49     368 .. 0.41

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.4e-06
       TFIIA 115 tfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq..sqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqq 211
                 + s  ++  p++ ++a  ++q a+  ly++    ++ ++  +++  ++++    + +a +ss+++++++++  ++ ++ +q+ +k++++++++     +
  CDO71698.1 123 ASSC-SSAVPQLSLMAAAKQQAARRMLYSMFYRGPVLASEDSHNPSSSFKDgsPNDAAPASSASPSDSSPSGPSVSSQGKQKRKKSKKRRREEDGDARE 220
                 2222.2223334555555555565555555555555555555555555554222222223333333333222222222222222222222222222222 PP

       TFIIA 212 q.qvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespv...legelsaeeeagaqkeelsreeidri.re.ealkakelekeskkkkr.ae 303
                 + + +++  +e+q+++++            ++ +g+e+al++ + v   l +   ++ee++a  +++ r+e +r+  e  a k++ +++++++ +  ++
  CDO71698.1 221 KkTRKREA-KEEQEEKEP------------NTSKGKEKALAHTAAVsndLTASETESEESKA-ARKAARAERKRLkAEkRARKEERRKRKAERVECeVA 305
                 21211111.122222222............22222222222222222222222222222222.122222222323111111111111112222122222 PP

       TFIIA 304 e.ssladlseilqlDGagddsde...e 326
                 e ++ + ++  +  DG +d+ +    e
  CDO71698.1 306 EaEAEKGERPTATADGVADSAKTpqtE 332
                 224444677788899999988773330 PP

>> CCSAP  Centriole, cilia and spindle-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  36.5   1.4e-05     0.082      31     236 ..     157     376 ..     149     380 .] 0.45

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
       CCSAP  31 RRllEqtHkPW..fwegsds.....ssdssgssspssss......knkvepeeskkevkleeeeee....keeeraa.aeeeekaseeeteekevkeke 111
                     E +H+P   f +gs +     s     s sps ss      +     + ++k++k++++++e    ++e++++  e++e+++e+e ++++ kek+
  CDO71698.1 157 VLASEDSHNPSssFKDGSPNdaapaS-----SASPSDSSpsgpsvS----SQGKQKRKKSKKRRREedgdAREKKTRkREAKEEQEEKEPNTSKGKEKA 246
                 5567999***5449997666333332.....222222222222221....2222222222222222112222222221222222333333444444444 PP

       CCSAP 112 kqqakaeasksekekkekekseskqqkp.......kssalakrekrksakspqqpsekkkenrhPfalygwgekqadt.....gsrkThnvsasastne 198
                  ++++a +++ +++++e+e+s++ ++         k       ekr+++++ +++++++ e     a  + ge+ + t      s kT + +   +++ 
  CDO71698.1 247 LAHTAAVSNDLTASETESEESKAARKAAraerkrlK------AEKRARKEERRKRKAERVECEVAEAEAEKGERPTATadgvaDSAKTPQTETI-PMHV 338
                 444444444444444444444444444432222222......3333333333333333344444445555555555553333345566666554.5566 PP

       CCSAP 199 iheSalraktRRevekrkkaaerrrarsadvektrkvk 236
                   +S+  +  R +v+k++k+  r+ a+   +   rk+k
  CDO71698.1 339 NSRSDTPVPIRTKVKKKEKRERRQAANVEGLSLGRKTK 376
                 679*************8887777777766666555555 PP

>> cIII  cIII protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.9   0.00047       2.8      17      38 .]     262     283 ..     261     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00047
        cIII  17 tESELskkiRrLIRAArkrLkd 38 
                 tESE sk  R+  RA rkrLk+
  CDO71698.1 262 TESEESKAARKAARAERKRLKA 283
                 8*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2417  (0.13481); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                       203  (0.0113224); expected 17.9 (0.001)
Passed Fwd filter:                        89  (0.00496402); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.45u 0.34s 00:00:01.79 Elapsed: 00:00:00.56
# Mc/sec: 2036.62
//
Query:       CDO71699.1  [L=450]
Description: hypothetical protein BN946_scf184915.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-14   53.3   0.6    2.9e-14   52.4   0.6    1.5  1  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
     0.0064   16.5   0.9     0.0064   16.5   0.9    2.9  4  Borealin         Cell division cycle-associated protein 8


Domain annotation for each model (and alignments):
>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.6   3.2e-18   2.9e-14       1      55 [.      13      67 ..      13      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 3.2e-18
  Nbl1_Borealin_N  1 kkealLenfdlEveeRirrlraelelllktlrnrfelellriPkavRkmtmkell 55
                     +ke+lL+n+dlEv +++r+++++l++ l+++r ++e  +lriP+ vR+ t++e+ 
       CDO71699.1 13 EKEQLLANLDLEVAHKTRQFEEWLADALENFRRHQEGLILRIPRIVRNVTLREFA 67
                     59***************************************************95 PP

>> Borealin  Cell division cycle-associated protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.5   1.4e+04      94     116 ..      14      36 ..       9      40 .. 0.72
   2 ?   -2.3   0.1      0.47   4.3e+03      17      47 ..     188     221 ..     171     228 .. 0.43
   3 !   16.5   0.9   7.2e-07    0.0064      27      66 ..     241     282 ..     218     296 .. 0.68
   4 !    3.9   0.1    0.0054        49      65     117 ..     388     440 ..     320     444 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.5
    Borealin  94 deellekLdeetlkqlkkLqsnL 116
                 +e+ll++Ld e+ ++ ++ ++ L
  CDO71699.1  14 KEQLLANLDLEVAHKTRQFEEWL 36 
                 34789999999888777766655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.47
    Borealin  17 avSadrsv....akstslitpkvdprlpktllRtp 47 
                 a+S +r       + +s+  p+  ++ p  + Rtp
  CDO71699.1 188 AQSQARPLqrvpSGAMSP-SPQKGSSRPLQFPRTP 221
                 444333223221333332.2333334444444544 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 7.2e-07
    Borealin  27 stslitpkvdprlpkt..llRtpkagErvlslsGSPlaegvv 66 
                 s  +  ++++p lp      R+p++ E +ls+ GSPla+  +
  CDO71699.1 241 SRVPSSSTFNPVLPSEssHPRWPRKDENMLSVNGSPLANPYQ 282
                 33455667778887765568******************9854 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.0054
    Borealin  65 vvteevanvniPvgdGevlslqakeldevdeellekLdeetlkqlkkLqsnLa 117
                 ++++  a v++ ++dG+vl+ ++ + +  + + le + ++++kq k+  ++L 
  CDO71699.1 388 SAPSVSALVSVQTKDGHVLEFNPLQTSPEELDALEGITDSAKKQAKEDMARLV 440
                 567778999*************9999777777999999999998887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3245.25
//
Query:       CDO71700.1  [L=826]
Description: hypothetical protein BN946_scf184915.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-47  161.3   0.0    4.7e-47  160.5   0.0    1.4  1  RasGEF    RasGEF domain
    1.7e-19   70.0   0.0    4.7e-19   68.6   0.0    1.7  1  RasGEF_N  RasGEF N-terminal motif
  ------ inclusion threshold ------
      0.034   13.9   0.3        5.4    6.8   0.0    2.4  2  DUF2239   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   7.9e-51   4.7e-47       1     176 [.     559     739 ..     559     740 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 7.9e-51
      RasGEF   1 elAeqltlieaelfskikpeellgsawskedrspn.veaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqsspv 98 
                 elA+qlt++e  l+++i+peell +    +  sp  v+av++ +++++ wva++il+e++ k+R  ++++fik+a++c +l+N+++  +il+aL+ss +
  CDO71700.1 559 ELARQLTVMECTLYCAIQPEELLFEGGGGN-PSPArVKAVTSLSTAITGWVAESILNEPDTKRRTALVKFFIKLADRCVSLRNYSTPRSILAALDSSTI 656
                 79*********************9552222.23445*************************************************************** PP

      RasGEF  99 srLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl......egk.iNfeKr 176
                  rL++tw  +s+k++ ++e l++l+++ +n+++yr++l+++    p++Pflglyltdltf  egnp+        e+k iNf+K+
  CDO71700.1 657 ARLHQTWMGLSQKYKVQMEALRKLADHARNYHEYRSRLRNI--APPAVPFLGLYLTDLTFCREGNPSHRtspkapEKKlINFNKY 739
                 *****************************************..6778*****************99999999**98888*****7 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   7.9e-23   4.7e-19       9      97 ..     371     460 ..     367     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 7.9e-23
    RasGEF_N   9 kLierLtsk.rlldddfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddka 97 
                  L+er+t++ +l+++ f  +F++t+r Fttpa+Ll++ i ry+i pp++l   +  +w++++  ++rlrv +++k+wve+++ + sd+ +
  CDO71700.1 371 SLVERMTPHdSLVEPPFAAVFFMTFRLFTTPADLLDAVITRYNILPPPGLCDADLRLWQQRKGLPVRLRVSNFIKTWVESYWRHASDSAV 460
                 79*******888899*****************************999999777789***************************8888753 PP

>> DUF2239  Uncharacterized protein conserved in bacteria (DUF2239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2    0.0045        27      84     147 ..      86     147 ..      84     156 .. 0.85
   2 ?    6.8   0.0    0.0009       5.4      94     139 ..     659     704 ..     653     715 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0045
     DUF2239  84 LGvvaREvtLLprhWeWLaaqpgGaSvaLRkLvdearraeaekdraraaqeaayrfmsalaGdl 147
                 +G  +R+  LL +h   La+ +      L  Lv +a+ra++e  +a +a+e   + m+ laG+l
  CDO71700.1  86 IGCLSRDAPLLKQH-GVLAQERKRILSDLASLVSQAKRASDEV-AAEDAREIEVQAMVRLAGQL 147
                 68888888888877.568888888888999*******998876.78899*************87 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0009
     DUF2239  94 LprhWeWLaaqpgGaSvaLRkLvdearraeaekdraraaqeaayrf 139
                 L + W  L+++      aLRkL d+ar+ ++ ++r r+    a  f
  CDO71700.1 659 LHQTWMGLSQKYKVQMEALRKLADHARNYHEYRSRLRNIAPPAVPF 704
                 66778888888888889******************99877666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5860.57
//
Query:       CDO71701.1  [L=219]
Description: hypothetical protein BN946_scf184915.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   50.5   0.0    1.9e-13   49.8   0.0    1.3  1  SH3_2     Variant SH3 domain
    2.1e-13   49.9   0.0    3.4e-13   49.2   0.0    1.3  1  SH3_9     Variant SH3 domain
      1e-12   47.4   0.0    1.7e-12   46.8   0.0    1.4  1  SH3_1     SH3 domain


Domain annotation for each model (and alignments):
>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   3.3e-17   1.9e-13       2      54 ..     120     171 ..     115     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.3e-17
                 EEESS-B-SCGCCB..--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGE CS
       SH3_2   2 vraiedyvgedkse..LsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslv 54 
                 v a+ d+ ++  s   Lsf++G+vi+vl   ++d+ gww gev+Gr+G+fPs++v
  CDO71701.1 120 VLAMHDFAPQQQSVtcLSFRAGQVIHVL---NRDPSGWWDGEVDGRRGWFPSNYV 171
                 5566677776666688************...**********************99 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   5.8e-17   3.4e-13       1      49 []     122     172 ..     122     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 5.8e-17
       SH3_9   1 Alypyepredd..eLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 A+++++p+++    Ls+++G+vi v++++ +gW++g+ +Gr+G++P+nyv+
  CDO71701.1 122 AMHDFAPQQQSvtCLSFRAGQVIHVLNRDPSGWWDGEVDGRRGWFPSNYVT 172
                 89******998757************999********************96 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.8e-16   1.7e-12       2      48 .]     122     168 ..     121     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.8e-16
                 ESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   2 AlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 A++D+++++     Lsf+ G vi+vl+++ +gWw+g+++  g++G++Ps
  CDO71701.1 122 AMHDFAPQQqsVTCLSFRAGQVIHVLNRDPSGWWDGEVD--GRRGWFPS 168
                 88999999955567*************************..69*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1624.78
//
Query:       CDO71702.1  [L=456]
Description: hypothetical protein BN946_scf184915.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-21   76.3   2.2    7.2e-20   71.5   0.0    2.7  2  NicO             High-affinity nickel-transport protein
  ------ inclusion threshold ------
       0.21   11.4   3.0        1.3    8.9   0.2    2.9  2  PMP1_2           ATPase proteolipid family
       0.31   10.8  10.7       0.35   10.6   1.8    2.7  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   1.2e-23   7.2e-20      16     154 ..     109     294 ..     108     307 .. 0.90
   2 ?    2.7   1.2     0.011        68     216     248 ..     355     387 ..     346     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.2e-23
        NicO  16 AvdagHgkai..........irklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigtei.asFllvilllnllllrklrkl 103
                 A+da+H+             +r+l+  g+ +++ G+++slg+s++vv+v v+++++  + + ++ + + g+++g  + asFl++++l+n ++l+ + + 
  CDO71702.1 109 ALDADHIRLPpasesaidnaTRSLINMGQLPVTCGLFFSLGHSTIVVVVNVAIAISTDVYNHIDGVGAVGGIVGSAVsASFLFIVGLANSIILFRILRK 207
                 89999997544455555************************************************************************9998887777 PP

        NicO 104 frklerlgrapaaeleaalakr....................................gllsrilgklfrlitkswhmypvgflfgl 154
                 + ++++ ++a a e  +a a++                                     l+ +++g+++ +++++w mypvg lfg 
  CDO71702.1 208 RYRVKKRRAARARENVEAGAAHtaigdkrdstigrdqstaenlddngddgkadelhgnTLMMKVIGPVVTFVDRPWKMYPVGLLFGF 294
                 7777775777777777777778899******************************9999999***********************95 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.011
        NicO 216 klvyamsitgtsitvalliglivtlklvakkfa 248
                 ++ +++ +t +si+va+ i li  ++lv ++ a
  CDO71702.1 355 MSSLSILLTVMSIFVAFSISLITIMGLVGDNCA 387
                 566778889999*********999999987655 PP

>> PMP1_2  ATPase proteolipid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2     0.046   2.8e+02      16      38 ..     192     214 ..     185     218 .. 0.76
   2 ?    8.9   0.2   0.00021       1.3      28      39 ..     439     450 ..     423     452 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.046
      PMP1_2  16 LvGLACvAivltilYRkWqeRqR 38 
                 +vGLA   i+  il +++  ++R
  CDO71702.1 192 IVGLANSIILFRILRKRYRVKKR 214
                 69***988888888777766665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00021
      PMP1_2  28 ilYRkWqeRqRG 39 
                  lYR+Wq+R +G
  CDO71702.1 439 YLYRQWQARTKG 450
                 59*******998 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   5.8e-05      0.35      12      66 ..     167     221 ..     153     230 .. 0.79
   2 ?    4.4   1.9    0.0053        31      14      55 ..     394     438 ..     387     450 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.8e-05
  Phage_holin_2_4  12 agnkatggGavvsfaGflasselialvGlavAliGlLvnWyYkreanRRaaaehe 66 
                      + n+  g+Gav++++G   s+ ++ +vGla  +i + +     r + RRaa   e
       CDO71702.1 167 VYNHIDGVGAVGGIVGSAVSASFLFIVGLANSIILFRILRKRYRVKKRRAARARE 221
                      66788899**********************9999887765555566677665544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0053
  Phage_holin_2_4  14 nkatggG.avvsfaGflasselialvGlav..AliGlLvnWyYkr 55 
                      n   ggG a+    G+  +++  +++G+a+    i ++  Wy  r
       CDO71702.1 394 NAPDGGGlAGRWWRGWAKANDNSGYIGAAIvgSFIAVVSVWYGAR 438
                      44444442344468*************987333455555577544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3116.07
//
Query:       CDO71703.1  [L=332]
Description: hypothetical protein BN946_scf184915.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-09   36.4   0.0    3.3e-09   36.1   0.0    1.0  1  TRI5      Trichodiene synthase (TRI5)


Domain annotation for each model (and alignments):
>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.9e-13   3.3e-09      56     308 ..      78     328 ..      62     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.9e-13
        TRI5  56 vapkrlqavlrtisllvvycwakvpkevmvdvsiylayilvlddssdepstemksffedlikGreqkhpfwallnehlpnllrhygsfcalnilrstld 154
                 ++p  +++v+ +++ +   ++a +p + +  ++ y  y+l +dd  +    ++ +    l++  e   p  ++l   + ++  +y ++ a  i  st++
  CDO71703.1  78 LTPAFVESVIDASCSMAESTYAHLPYKHQLLIATYSLYVLYVDDLGQRNVDALGQIGRWLVAREEVTDPVLKRLVLQFDQMHEYYPTLGADLINASTFE 176
                 56888999999999****************************************************************************99******* PP

        TRI5 155 ffeGcwieqyn.fgGf...pGsddypsflrrlnglGgivaatlfpka.kfderklfaeissavaqienqlvlvndllsfykey.dderdqinlvsnlvt 247
                    G ++e      G     G+  y  flr   g+G ++a   f +  +  + + +++++ a+ q  n +      lsfyke  d e d  n v+  + 
  CDO71703.1 177 GIIGRYMECAAdKTGAvvdSGTTLYAAFLRLKTGFGAASALFNFVRGwRSPDDHRYLQLVPAMEQYFNAIN-----LSFYKEMlDGETD--NYVHLRAA 268
                 99998888653123322237999**************9999888886245567789999999888766654.....7*****7355555..44555555 PP

        TRI5 248 vdgitldealekltddtihackqlvavlkdkdpkvlatirafvhGyvtwhlcdaryrlrei 308
                 +++    + + +l ++t+ + + +  +    d ++    r+ + Gyv + l   ryrlre+
  CDO71703.1 269 AEDKDPLTIIRELVEETLDNVRDIERL-VSSDAELARICRSHLMGYVEFTLRAKRYRLREL 328
                 555555566788888888877666554.4679***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2322.76
//
Query:       CDO71704.1  [L=414]
Description: hypothetical protein BN946_scf184915.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-10   39.7   0.0    1.2e-08   34.7   0.0    2.3  2  Cyclin_N      Cyclin, N-terminal domain
  ------ inclusion threshold ------
       0.19   11.4   0.0       0.31   10.7   0.0    1.3  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.3e-12   1.2e-08      26     126 ..      49     172 ..      27     173 .. 0.81
   2 ?    2.7   0.0     0.011        98      74      87 ..     239     252 ..     229     304 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.3e-12
                 S-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHT...................... CS
    Cyclin_N  26 lnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyit...................... 102
                  +++ R++++ ++  v     + ++t+++a n+++Rf+     +   ++ v +++L++++K++++   k +d+ +++                      
  CDO71704.1  49 QEEKARQQACGFIEAVGLGIGFPRKTIATAQNLYHRFYLFFPRKDFAFHDVSLAALFVSSKMHDT-LKKPRDILMAAyavrfpelavkaksmggeiemd 146
                 2349***********************************8888888****************888.56666665555566999999999****999986 PP

                 ..TTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 103 ..deafteeeilemErliLetLnfdl 126
                       +++ il +Erl+Le ++f+ 
  CDO71704.1 147 paTVENDRQRILAVERLMLESICFNF 172
                 543378999**************985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHH CS
    Cyclin_N  74 qlvgatcLllAaKv 87 
                 + v+++cL+lAa +
  CDO71704.1 239 HVVALGCLYLAALL 252
                 789********955 PP

>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.5e-05      0.31      54     105 ..     113     164 ..      83     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.5e-05
                   HSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHHHHHHHHH CS
  Ribosomal_S7  54 tkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqalAlrwii 105
                   t k+p ++l  A     P++ vk+  +GG     p  v+++R++ lA++ ++
    CDO71704.1 113 TLKKPRDILMAAYAVRFPELAVKAKSMGGEIEMDPATVENDRQRILAVERLM 164
                   4568999999999999*******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3071.40
//
Query:       CDO71705.1  [L=406]
Description: hypothetical protein BN946_scf184915.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-99  333.2  20.9    2.3e-99  333.1  20.9    1.0  1  PIG-U     GPI transamidase subunit PIG-U


Domain annotation for each model (and alignments):
>> PIG-U  GPI transamidase subunit PIG-U
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.1  20.9  1.3e-103   2.3e-99       3     382 .]      12     374 ..      10     374 .. 0.95

  Alignments for each domain:
  == domain 1  score: 333.1 bits;  conditional E-value: 1.3e-103
       PIG-U   3 gvllrllllslassldenlssrvelstpltsfkrlqEgvallksgispYsggvvhqpPLllallslllssintkslqvlasllflliDllialllykik 101
                  v++rlll  ++s+l++ l+ + +ls+plts++rl+Eg++l+++gi+pYsgg ++++PLll+l+s++              +l++++D  +a++l++i 
  CDO71705.1  12 LVAARLLL--AFSPLPDALKYDQQLSSPLTSYSRLREGIYLFQHGIDPYSGGSFRHSPLLLSLFSTV-----LPLTRYTSPILWTAVDSGAAWALVQI- 102
                 6899****..9********************************************************.....57778999******************. PP

       PIG-U 102 nkslaksekkreksktkkslsplliaavYlfNPltilscvslStsvlsnlllllslylalkgkallsalslalatylslypllllapllllllkllkas 200
                   ++ ++  kr+       +++  i a+Yl+NP+++l +++lSts+++nll ll++++a++g+a+ ++l+la +++lsl  +ll+ap+ ll++++  ++
  CDO71705.1 103 --WRLRAGAKRT-------SRDGQIYALYLLNPYIVLPSLALSTSSMENLLCLLAVMFACRGRASAALLALACLVQLSLPAVLLVAPTTLLAITRPVSR 192
                 ..4554444333.......4677899***************************************************************9999977777 PP

       PIG-U 201 kskkpsksnklskllrllllfllyllvLllaSfllggswsflratygniltvsdltPnlGlfWYfFtemFdrFrsfFlfvFqllpflyvlPLtirLrkq 299
                  +  +    + ++++ l++ f+ y ++L  aS+++ g+w ++++t+g  lt++dltPn Gl+WYfFtemFd+Fr+fFl+vF +++++y+ P++i+++++
  CDO71705.1 193 LALARPFDVQGKQTIPLIAEFVGYSALLTFASTFVCGNWRWVEKTWGASLTLPDLTPNPGLWWYFFTEMFDHFRPFFLMVFCVHLLIYIAPVCIKFQHD 291
                 77777778889999************************************************************************************* PP

       PIG-U 300 pllllvlllalilifkpyptvgdlalllsLlplfkellkrmkysfiillillvtllLspvfyhlWivkgtGNaNFffaitLvy 382
                  l++++ll+++ ++fkpypt++d +l++s+  +f+e++++++++++++li+l+++lL p+f  lW+++gtGNaNFf+a+tLv+
  CDO71705.1 292 FLYAVFLLVGVQALFKPYPTLSDPGLFFSMFSIFPEIYPYLRHPIVTALIHLHASLLLPLFNSLWLRQGTGNANFFYASTLVF 374
                 *********************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2569.60
//
Query:       CDO71706.1  [L=499]
Description: hypothetical protein BN946_scf184915.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-61  208.5   0.0    3.9e-47  161.0   0.0    3.0  3  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   6.2e-12   1.1e-07       1      72 [.      42     112 ..      42     122 .. 0.92
   2 !  161.0   0.0   2.2e-51   3.9e-47     144     411 ..     124     396 ..     118     398 .. 0.85
   3 !   13.0   0.0   1.8e-06     0.032     410     448 ..     419     457 ..     418     473 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 6.2e-12
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpde 72 
                 Ppgp+ lplvgnl+ l + ++++  + +l++kyg+i+ l + + p++v++++  + e+l k+++++s+r+ +
  CDO71706.1  42 PPGPRGLPLVGNLFDLPT-HKPWLGYIDLRRKYGDIVYLEFLGSPMMVVGSARVAIELLDKRSANTSDRTPS 112
                 9****************6.899999**************************************999999554 PP

  == domain 2  score: 161.0 bits;  conditional E-value: 2.2e-51
                 HHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSC.....HHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCS CS
        p450 144 llskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylpt.....kllrklkeavkklkdlldklieerretldsakks 237
                 ++s  + +vi + ++g+++   +d++ls + +a++ +s+ +   +   + lfp+l+ lp+     ++ + + + + + + l  +l+ e ++ l + +++
  CDO71706.1 124 IVSSTFQSVILNAVYGVHITDATDNRLSIAAAAIDSISDATPGYF--AVELFPVLRHLPKwfpgaSFHQGFARSRAANHRLKHELFDEVKAALARGEER 220
                 6677778899999******99*****99999******99664443..55555555555541111246788999999999999**************766 PP

                 SCSHHHHHHHHCTTCTCT..SSSSHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHH CS
        p450 238 rrdfldalllakkekkge..sklsdeelaatvlellfaG.vdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLR 333
                 +    d+l  ak  ++ge      +ee++++v  + ++G +dTt +t + ++  +a +Pevq+k + E+d+v+g++r p++ d  +l y +a++kE+LR
  CDO71706.1 221 PCVASDLLRRAK--ESGEsgLDPEEEEVMKNVCAVAIEGsSDTTGNTFEAFFVAMALYPEVQKKAQAELDSVVGRDRLPDHGDKDELVYINAIVKEALR 317
                 666666666665..344424678899999999999998746********************************************************** PP

                 HSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS..CTESSCTT--TTEEGGGS CS
        p450 334 lhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg..nskrksfaflPFGaGpRn 411
                  h+v+pl++p+++ +d + +gy+ip Gt +i+n++++++dpev+++P eF+peRF ++ +  ++ +++   + FG+G+R+
  CDO71706.1 318 WHNVLPLGIPHRTINDDEMDGYFIPGGTSIITNVWGILHDPEVYDDPLEFRPERFIKDGKldPT-VPDPTAFMFGFGRRQ 396
                 *********************************************************9889755.66666666******7 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.8e-06
                 GS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEES CS
        p450 410 RnCiGerlArmelklflatlLqnFevelqpetdpppile 448
                 R+C+G++lA+  l++ +a++L+ F+++l+ +++ +pi+ 
  CDO71706.1 419 RICPGRHLAIPSLFINIASVLHVFDISLPLDENGQPIQI 457
                 9**************************977666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3113.78
//
Query:       CDO71707.1  [L=638]
Description: hypothetical protein BN946_scf184915.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.1   0.2    2.4e-06   26.7   0.0    3.1  3  TRI5      Trichodiene synthase (TRI5)
     0.0042   17.1   0.0      0.013   15.5   0.0    1.7  2  EspB      Enterobacterial EspB protein


Domain annotation for each model (and alignments):
>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.7e-10   2.4e-06      63     193 ..      85     217 ..      75     247 .. 0.88
   2 !    3.7   0.0    0.0025        22     225     290 ..     287     350 ..     274     356 .. 0.71
   3 !    2.9   0.0    0.0045        40      62     201 ..     484     627 ..     476     635 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.7e-10
        TRI5  63 avlrtisllvvycwakvpkevmvdvsiylayilvlddssdepstemksffedlikGreqkhpfwallnehlpnllrhygsfcalnilrstldffeGcwi 161
                 a + t +++   ++   + + +  ++iy +y + +dd  +    ++ +f++ +++  + + p   +l   + ++  +y  +   ni+  tl+ + G +i
  CDO71707.1  85 ALTDTCCTIAESAYRHTSYDHQLLIAIYTTYCVYVDDLGQRDLDALGNFIKRFVAREDLRDPVLERLVRQFQDMHEYYPRLSVDNIVTKTLEAMIGMYI 183
                 667777777778889999999****************************************************************************** PP

        TRI5 162 eqynfg..GfpGsddypsflrrlnglGgivaatl 193
                 e    g    pG+ +yp f+r   g+G + a   
  CDO71707.1 184 EFTTKGmvVAPGALMYPAFMRLKTGIGAAYALFN 217
                 *866441157****************99877555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0025
        TRI5 225 llsfykeydd.erdq.inlvsnlvtvdgitldealekltddtihackqlvavlkdkdpkvlatirafv 290
                  lsfyke    e d+ inl     + d +     l +l+++t+ + +++ + l   dp++ + +++++
  CDO71707.1 287 SLSFYKEILAgETDNyINLRASAEQKDPV---VVLRELAEETLDTIRRVQD-LTSSDPQMTEILHSYI 350
                 4899*998531333325665555555555...5688888888888777666.5678****99988876 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0045
        TRI5  62 qavlrtisllvvycwakvpkevmvdvsiylayilvlddssdepstemksffedlikGreqkhpfwallnehlpnllrhygsfcalnilrstld....ff 156
                 + v+ t+ ++v  ++  +p + +  v+ y  y+l +dd  +    ++ +    l++  e   p  +++   + ++   + ++ a  i   t++     +
  CDO71707.1 484 DGVIDTSYGIVESSYPHLPYKHQFFVATYAVYVLYVDDLGERNIDALGQVGRWLVAREEVTDPVLKRMVLEFDEMYESFPALRADLINANTFQgilgRY 582
                 67889999999999****************************9999*999999***9999******999999998887777665444445555000055 PP

        TRI5 157 eGcwieqynfgGfpGsddypsflrrlnglGgivaatlfpkakfde 201
                   c      +   pG+  y   lr   g+G + a   f k + d 
  CDO71707.1 583 MECVTSDAGMVVRPGATLYATSLRLKIGIGAAFALFNFVKGRNDS 627
                 5566666677778**********9999999988877777666665 PP

>> EspB  Enterobacterial EspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.43   3.9e+03     160     187 ..     320     346 ..     308     355 .. 0.72
   2 !   15.5   0.0   1.5e-06     0.013      11      71 ..     434     496 ..     427     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.43
        EspB 160 snleeykktvresqDkiasvlqdlrsta 187
                 + +ee+  t+r+ qD  +s   ++++++
  CDO71707.1 320 ELAEETLDTIRRVQD-LTSSDPQMTEIL 346
                 567888888888876.455555666655 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.5e-06
        EspB  11 kLvrklrtvlqdylqrqlalsyeiQk.aafqtqkka.IeekkAgAtaallegvlsivlGilgs 71 
                  L+ ++++v +d+l+r + +s    + a + ++  a Ie+  Ag + a ++gv+++  Gi++s
  CDO71707.1 434 HLLSEIKDVFRDFLTRLKYQSPHTSVdAQLRAKVSAvIEAWDAGLDKAFVDGVIDTSYGIVES 496
                 6899************88777666551456677777*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4174.05
//
Query:       CDO71708.1  [L=382]
Description: hypothetical protein BN946_scf184915.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-05   21.4   0.6     0.0016   17.4   0.2    2.6  2  TRI5      Trichodiene synthase (TRI5)


Domain annotation for each model (and alignments):
>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   8.8e-08    0.0016      51     277 ..      98     325 ..      83     340 .. 0.76
   2 ?   -0.7   0.0     0.027   4.9e+02     290     308 ..     360     378 ..     353     380 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.8e-08
        TRI5  51 kailkvapkrlqavlrtisllvvycwakvpkevmvdvsiylayilvlddssdepstemksffedlikGreqkhpfwallnehlpnllrhygsfcalnil 149
                 k  ++++   l+ +l+++++ v   +  +p +    vs+y  y+   +d  ++    ++ f   +++  +q       l + l +    + +f a +i+
  CDO71708.1  98 KWKIRLSAAFLDKALNASCNYVETVYGHLPSDHRCYVSLYTLYMFYAEDIGQTHPECVMDFTRRFVRAEKQPDGVLECLAATLKRAYDLWSPFGADAII 196
                 5556666667777888888888889999*********************976655666789999*9999999999************************ PP

        TRI5 150 rstldffeGcwieqy..nfgGfpGsddypsflrrlnglGgivaatlfpkakfder..klfaeissavaqienqlvlvndllsfykeydderdqinlvsn 244
                   tld +   +ie    n+     +        r+      ++++  p      r  k f+++++   ++ +   +  d+lsfyke     ++ n v+ 
  CDO71708.1 197 TGTLDALSANYIECTtqNLVIKQRATRLTCASGRVSVPCSPTSSSPIPGGTPRSRicKSFQKLTTG--RLVPIENFFSDILSFYKEEL-AGERTNYVHL 292
                 ************975114444444555555555555544444444444433333222778887764..3444445789*******966.78899***** PP

        TRI5 245 lvtvdgitldealekltddtihackqlvavlkd 277
                  v +++ + ++ l kl ++   +++++  vl d
  CDO71708.1 293 RVAAEQTSTENVLRKLVEEVSDTARRVKLVLAD 325
                 ******************999988888777766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.027
        TRI5 290 vhGyvtwhlcdaryrlrei 308
                    y  +hl  +ryrl e+
  CDO71708.1 360 GQCYLEFHLKTPRYRLAEL 378
                 567999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2619.17
//
Query:       CDO71709.1  [L=250]
Description: hypothetical protein BN946_scf184915.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00047   19.1   0.0    0.00056   18.9   0.0    1.1  1  TRI5      Trichodiene synthase (TRI5)
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.38   10.1   0.0    1.7  2  SeqA_N    SeqA protein N-terminal domain


Domain annotation for each model (and alignments):
>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.2e-08   0.00056      60     207 ..      88     237 ..      45     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.2e-08
        TRI5  60 rlqavlrtisllvvycwakvpkevmvdvsiylayilvlddssdepstemksffedlikGreqkhpfwallnehlpnllrhygsfcalnilrstldffeG 158
                     ++ t ++l+  ++a ++ e     + + ay +  dd  ++   ++++f   +i+G+eq  p  ++l + + +    +  + a +i+  tl+    
  CDO71709.1  88 HATKIVDTACHLIEAAYAHLSPEHRRYAACFAAYFVYADDLGNQDLEALHQFSRRFIAGQEQLNPVLNRLAQLIRRAHELWTDMGASAIVTGTLEAIVA 186
                 5566788999*************************************************************************************9998 PP

        TRI5 159 cwie..qynfgGfpGsddypsflrrlnglGgivaatlfpkakfderklfae 207
                    e    n+   pG+  yp++lr   g+     a lf +   d  + + +
  CDO71709.1 187 FHTEftTRNMVIKPGALRYPDYLRLRSGIDPPFIAFLFMRGWRDTAESYVQ 237
                 8877335799999***********999988888888887777776666665 PP

>> SeqA_N  SeqA protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.3e-05      0.38       7      20 ..      66      79 ..      65      89 .. 0.78
   2 ?   -3.1   0.0      0.57   5.1e+03      12      18 ..     142     148 ..     142     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.3e-05
      SeqA_N  7 DeeLYrYIasntqa 20
                DeeL rYIas  q+
  CDO71709.1 66 DEELRRYIASDAQS 79
                9*********9986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.57
      SeqA_N  12 rYIasnt 18 
                 r+Ia++ 
  CDO71709.1 142 RFIAGQE 148
                 89**985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1768.69
//
Query:       CDO71710.1  [L=352]
Description: hypothetical protein BN946_scf184915.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-35  119.7   6.4    2.5e-13   49.7   0.1    3.8  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     2e-16   3.5e-12      17      94 ..      49     122 ..      46     124 .. 0.92
   2 !   49.7   0.1   1.4e-17   2.5e-13       8      94 ..     139     220 ..     133     223 .. 0.94
   3 !   24.1   1.1   1.4e-09   2.4e-05      48      94 ..     290     336 ..     233     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2e-16
                 HHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  17 avatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++++  ++P+dvvKtr+q+++ +++ s    +l+  ++i+ +eG ++l  G++p+ +++ ++ ++kf+ ye+ k+ + 
  CDO71710.1  49 LGQAHYAAPIDVVKTRIQVDPAMARMS----LLSGGRRIIAQEGPAALLTGFGPTAVGYLVQGGAKFAGYEFWKKQFV 122
                 56667789***************9875....9*****************************************99875 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.4e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +l a+++a  +a ++ tPl+  ++rl +q++ ++      ++  + ++ +eeGl+gly G+lp l +++p++  +f+++e++++l +
  CDO71710.1 139 YLGASSVAEFFADILLTPLEATRIRLVSQRGYATG-----LMTGFARLAREEGLSGLYAGFLPILCKQIPYAIGQFTVNEFCHELAF 220
                 677999**************************999.....******************************************99875 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  48 ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +   l+ + ++ G+rgl+ Gl+p+++++a   a +f+ly  +k+ l+
  CDO71710.1 290 MPYRLRVLAQQAGFRGLFAGLGPRMIMTAGLVAGQFLLYGAVKDALN 336
                 4445788999*********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2590.03
//
Query:       CDO71711.1  [L=228]
Description: hypothetical protein BN946_scf184915.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 1469.84
//
Query:       CDO71712.1  [L=922]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-87  291.9   0.0    7.7e-87  291.1   0.0    1.3  1  NCA2            ATP synthase regulation protein NCA2
    3.8e-46  157.6   0.0    6.5e-46  156.9   0.0    1.2  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> NCA2  ATP synthase regulation protein NCA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   0.0   8.6e-91   7.7e-87       8     289 .]     624     911 ..     618     911 .. 0.91

  Alignments for each domain:
  == domain 1  score: 291.1 bits;  conditional E-value: 8.6e-91
        NCA2   8 slrllvnsreeilewiqeavetvkgfwknwvvePikellktirhdegseiaimskesLesdleSLerMvvdFaednsesklteaeleklrekvregdlt 106
                 ++r+++ sr+++ e ++eavetvk+fw+ wv+eP++ +++t+r  ++    i++kes+++d +SLerM +++a+++   +  e el++l+++v+ gdlt
  CDO71712.1 624 AIRTAYASRASLEELAKEAVETVKSFWEGWVLEPLRGIIRTVRAGHD-GGMIVTKESVRADIDSLERMTLALAQEK--LHYGELELAALSRQVQMGDLT 719
                 68999**************************************3333.3458************************..899****************** PP

        NCA2 107 pvlkaYEkelrsPiknlvsGeLvraLLIQvqktKvDvevAlsgiDklLkSqeLvfgivaltPallilylllkllrallkkgrkae..rgkrarrqllrs 203
                  v+++YE++++sP++++++G+L+r+L+IQvqk+KvD+  AlsgiDklLkSqeL+f++v+++Pal i+y+++++lr++++ gr +    gk +r +++ +
  CDO71712.1 720 AVMQIYEEDIKSPLRSALQGTLLRSLFIQVQKAKVDIDQALSGIDKLLKSQELTFAFVGVAPALTIVYAFFSYLRNIWSGGRGRGryGGKARRGSVWLT 818
                 ******************************************************************************9888877645666******** PP

        NCA2 204 lrnierlltes.sae....eeekeekeeenelsykdqGllllevhvLrklaekllpke.leke.fleDledLekvklgvekklkvveRirrvY 289
                 +r+ierll+ + +++    ++ +++++++ ++s  + Gllll+v +Lr++ae+ lp++ + +e fleD+ dLe++klg ++kl+vv+R++r++
  CDO71712.1 819 VRRIERLLIAQpESHhhrtHSAASTSRSSTAVSPLTSGLLLLSVTHLRQYAESNLPANsRLREgFLEDVSDLEDPKLGRQDKLRVVDRMWRSW 911
                 ********99654445443333333378899999*********************999888889**************9************98 PP

>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   0.0   7.3e-50   6.5e-46       6     187 ..      26     216 ..      24     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 7.3e-50
                     EEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCSTTB..--S.SBEEEETTSEEEEEEES........S....C-TT--S-EEEEEEE-S CS
  Glyco_hydro_61   6 sltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCnkag..paa.avaevkaGdtvtfewke........k....wissHkGpvlvYlakca 85 
                      + vng+e+ g++ +vr++   ++n+p++dvts+di+Cn++   p++ ava+v+aG  v +e+++        +         kGpv++Yla+++
      CDO71712.1  26 AFAVNGVEQ-GHGVAVRVP---STNNPIKDVTSNDIICNTNFiqPVStAVASVPAGGVVAAEFHHtpagyvgpDpsdpLDPTDKGPVTAYLASVP 116
                     5789***96.888889888...67889************554578886779*************97776655414554446788**********5 PP

                     SS-GTTT--GGGCEEEEEEEE-EETE-STEHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB.--.E CS
  Glyco_hydro_61  86 sgddcktvdgsglkWfKideegldasakkWatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgtalpe.v 179
                        d+++ + +glkWfKi eegl+ ++++W +d l  ng  +++tiP+++++G+YllR+E i+L  a+s++ga+f++sCaq++Vtg+g+a pe v
      CDO71712.1 117 ---DATQSEVTGLKWFKIFEEGLNPQTHQWGSDLLFINGGYVNITIPSCVKAGQYLLRVESISLADATSYPGAEFFMSCAQIKVTGGGNASPEtV 208
                     ...56777888899*********************77788*************************************************77967* PP

                     EGCCSS-T CS
  Glyco_hydro_61 180 sfpgayka 187
                     sfpgay++
      CDO71712.1 209 SFPGAYTS 216
                     ******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 5826.41
//
Query:       CDO71713.1  [L=322]
Description: Auxilliary Activities Family 9 / Carbohydrate-Binding Module Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-64  215.6   0.1    9.2e-64  215.2   0.1    1.1  1  Glyco_hydro_61  Glycosyl hydrolase family 61
    1.1e-12   47.7   7.6    2.6e-12   46.5   7.6    1.7  1  CBM_1           Fungal cellulose binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.1     1e-67   9.2e-64       1     201 [.      20     231 ..      20     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 1e-67
                     XEEEEEEEETTEEEE--TSSSB-B---SSS--BGGTTSCHHCCSTTB.....--S.SBEEEETTSEEEEEEES.......S.....C-TT--S-E CS
  Glyco_hydro_61   1 HgvvksltvngkeyegdpevvrwsrkakdngpvtdvtspdiaCnkag.....paa.avaevkaGdtvtfewke.......k.....wissHkGpv 77 
                     H+++++l+vng+++ g+ + +r++     +gp+tdvts+di+Cn++      p + a+++v+aG++vt+ew++       +     +  sHkGpv
      CDO71713.1  20 HTIFQELYVNGVDQ-GHLTGIRVP---DYDGPITDVTSNDIICNGGInpyhqPISkAIIPVPAGASVTAEWHHtlagadpSdpadpVDPSHKGPV 110
                     9************6.888888888...6789*************544333334444559*************98877665156665669****** PP

                     EEEEEE-SSS-GTTT--GGGCEEEEEEEE-EETE-STEHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS CS
  Glyco_hydro_61  78 lvYlakcasgddcktvdgsglkWfKideegldasakkWatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgs 172
                     ++Ylak+ +  ++++ + +glkWfKi+e+g+d+ ++ W +d++++n+ k++++iP+++++G+YllR+E+iALh a+s++gaQfY++Caql++tg+
      CDO71713.1 111 IAYLAKV-N--NATDLTVTGLKWFKIWEDGMDS-NQVWGVDRMIANKGKVTFSIPECIEAGQYLLRVEMIALHGASSYPGAQFYMECAQLQITGG 201
                     *******.3..57999999************95.457******99999*********************************************** PP

                     -SB.--.EEGCCSS-TTSTTTSS-TTTTST CS
  Glyco_hydro_61 173 gtalpe.vsfpgaykasdpgilvniyeesk 201
                     g+a+p+ vsfpgay+ +dpgi +niy++ +
      CDO71713.1 202 GNAQPAtVSFPGAYSGTDPGIKINIYQHLS 231
                     **88966******************98544 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   7.6   2.9e-16   2.6e-12       1      29 []     290     318 ..     290     318 .. 0.99

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.9e-16
       CBM_1   1 lwgQCGGigWtGpTtCvsgatCtyqNeyY 29 
                 ++gQCGG ++tGpT+C++++tC+++NeyY
  CDO71713.1 290 QYGQCGGLTYTGPTACQAPFTCVVSNEYY 318
                 7**************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2376.26
//
Query:       CDO71714.1  [L=190]
Description: hypothetical protein BN946_scf184915.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-44  151.0   1.1    2.9e-44  150.7   1.1    1.1  1  Mod_r          Modifier of rudimentary (Mod(r)) protein
     0.0055   16.8   3.7      0.012   15.6   3.7    1.5  1  Rootletin      Ciliary rootlet component, centrosome cohesion
     0.0091   16.3   0.3       0.14   12.5   0.3    2.4  2  DUF349         Domain of Unknown Function (DUF349)
  ------ inclusion threshold ------
      0.099   12.8   0.6       0.15   12.2   0.6    1.3  1  DUF4337        Domain of unknown function (DUF4337)
       0.12   12.6   2.7       0.71   10.0   1.2    2.1  2  Tropomyosin_1  Tropomyosin like


Domain annotation for each model (and alignments):
>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   1.1     8e-48   2.9e-44       2     142 ..      22     173 ..      21     176 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 8e-48
       Mod_r   2 klSkeeLqelledeeklealvktlpevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldellqkfspdallarL 100
                 +lS+e+L++ll d+ +++a+++tlp+vkql + + el  +nes+a++nl+ +++l +lrse+qe+++ +k+le++++e e+e+ +++q+f++++ll+rL
  CDO71714.1  22 HLSREDLEDLLADPTYFQAIFHTLPQVKQLYQGQAELGSANESIARRNLAYQDDLYKLRSETQEAFDRAKSLEARWKEIEKEQRDVYQRFDSQFLLMRL 120
                 8************************************************************************************************** PP

       Mod_r 101 qtavaeaeeeSealaeefle...........geieldeFvkefkekRklyHlr 142
                 ++a+ +++++Sea a+ f++            ++++d+Fvkef+e Rk+yH+r
  CDO71714.1 121 RHATIAQDDLSEACANAFVQgspsdpspaplANKDIDDFVKEFRELRKTYHKR 173
                 *******************99*******************************9 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.7   3.4e-06     0.012      85     151 ..      50     116 ..      19     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
   Rootletin  85 klaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneylssehsrll 151
                 +l q  + L   +e   + n a ++dl kl+++ +++ + +++ e++w+e e++ ++ +++ +s+ l
  CDO71714.1  50 QLYQGQAELGSANESIARRNLAYQDDLYKLRSETQEAFDRAKSLEARWKEIEKEQRDVYQRFDSQFL 116
                 45555566666788999***********************************999999987666655 PP

>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   3.9e-05      0.14      45      71 ..      79     102 ..      38     106 .. 0.81
   2 ?    1.4   0.0      0.11   3.9e+02      51      67 ..     155     171 ..     145     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
      DUF349  45 laksttdwksatkrlkelqeeWkeiGp 71 
                 l     + ++a++r+k+l ++Wkei +
  CDO71714.1  79 LRS---ETQEAFDRAKSLEARWKEIEK 102
                 333...459***************976 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      DUF349  51 dwksatkrlkelqeeWk 67 
                 d+++ +k+++el++ ++
  CDO71714.1 155 DIDDFVKEFRELRKTYH 171
                 55666777777777665 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   4.2e-05      0.15      68     116 ..      58     106 ..      36     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.2e-05
     DUF4337  68 aeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeaneasdk 116
                    +++ +++++ +y+++  + ++e +e  ++Ak+lea+ +e ++++  
  CDO71714.1  58 LGSANESIARRNLAYQDDLYKLRSETQEAFDRAKSLEARWKEIEKEQRD 106
                 33455667789999*************************9999887765 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.056     2e+02      57      85 ..      44      72 ..      40      78 .. 0.83
   2 ?   10.0   1.2    0.0002      0.71       2      32 ..      76     106 ..      75     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.056
  Tropomyosin_1 57 klkeakekaeesekkktnnealtrkiqlL 85
                   +l ++k+  + ++++ + ne++ r++   
     CDO71714.1 44 TLPQVKQLYQGQAELGSANESIARRNLAY 72
                   677899999999*************9665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0002
  Tropomyosin_1   2 lnsLkleaeeaqekaeeleekvKeleqenle 32 
                    l +L+ e++ea ++a+ le++ Ke e+e+ +
     CDO71714.1  76 LYKLRSETQEAFDRAKSLEARWKEIEKEQRD 106
                    568***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1297.54
//
Query:       CDO71715.1  [L=190]
Description: hypothetical protein BN946_scf184915.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-25   89.1   0.1    1.3e-25   89.1   0.1    1.8  2  NuA4      Histone acetyltransferase subunit NuA4


Domain annotation for each model (and alignments):
>> NuA4  Histone acetyltransferase subunit NuA4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.1   7.1e-30   1.3e-25       1      78 [.      20      95 ..      20      96 .. 0.97
   2 ?   -1.8   0.1      0.16   2.8e+03      65      66 ..     151     152 ..     137     174 .. 0.56

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 7.1e-30
        NuA4  1 eLkellkkkrelekelakleeqIydkEteYleet..ssvGNiikGFdnylkssssssaaerrkrkvtdedriFSlSSvts 78
                eL+++l+kkr+l+k+la le qIy++E++Yl+et  +s+GNi++GFd+ylk    ++ + rrk +++++driFS SS+t+
  CDO71715.1 20 ELTQALAKKRALDKQLAMLEVQIYNLEGTYLTETaaHSGGNILTGFDGYLK----NQPSGRRKYEISEADRIFSTSSATY 95
                699********************************9***************....8999999*****************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.16
        NuA4  65 td 66 
                 ++
  CDO71715.1 151 QR 152
                 22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1287.57
//
Query:       CDO71716.1  [L=604]
Description: hypothetical protein BN946_scf184915.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-40  137.7   0.0    5.5e-40  136.8   0.0    1.5  1  AAA             ATPase family associated with various cellula
    4.9e-20   71.2   0.2    9.2e-20   70.4   0.2    1.5  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    2.2e-11   43.4   0.1    5.1e-11   42.2   0.1    1.6  1  AAA_lid_3       AAA+ lid domain
    0.00047   20.6   0.2      0.063   13.7   0.0    2.4  2  AAA_16          AAA ATPase domain
     0.0016   18.6   0.1      0.015   15.5   0.1    2.2  1  AAA_2           AAA domain (Cdc48 subfamily)
      0.002   18.1   0.2      0.016   15.2   0.2    2.2  1  AAA_5           AAA domain (dynein-related subfamily)
     0.0026   17.5   0.0     0.0054   16.5   0.0    1.5  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0071   16.6   0.5       0.42   10.9   0.0    2.5  2  AAA_22          AAA domain
     0.0096   15.4   0.1       0.13   11.7   0.0    2.2  2  PhoH            PhoH-like protein
     0.0096   15.7   0.2       0.57    9.9   0.0    2.2  2  AAA_11          AAA domain
  ------ inclusion threshold ------
      0.021   14.2   0.1      0.065   12.6   0.1    1.8  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.034   14.3   0.0      0.079   13.1   0.0    1.6  1  AAA_33          AAA domain
        0.1   12.3   0.1        0.2   11.4   0.1    1.4  1  IstB_IS21       IstB-like ATP binding protein
       0.18   11.5   0.2       0.51   10.0   0.1    1.9  2  AAA_24          AAA domain
        2.6    8.3   6.1         26    5.1   4.5    2.3  2  XhlA            Haemolysin XhlA


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0   4.6e-43   5.5e-40       2     132 .]     244     376 ..     243     376 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 4.6e-43
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 l+yGppGtGKTl+a+a a ++++ +l++ g++l+++++g+++k +r+ f+ akeka p i+fiDE+da++++r   ++s ++e +r++ +Ll++ldg++
  CDO71716.1 244 LMYGPPGTGKTLMARACAAQTKACYLKLAGPSLVQMFIGDGAKLVRDAFELAKEKA-PAIIFIDELDAIGTKRfdsEKSGDREVQRTMLELLNQLDGFS 341
                 89*****************************************************9.****************997777889999************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++ +++ vi+atnr+d ldpallr gR+drkie++l
  CDO71716.1 342 SD-ERIKVIAATNRIDILDPALLRsGRLDRKIEFPL 376
                 *7.55****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.2   7.7e-23   9.2e-20       1      57 []     111     185 ..     111     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 7.7e-23
                     EEEEEEE-TT..................SSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvldd..................teraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     V++V+E+ld                   +++a++kts++++v++++ g+vp+++L+pgDlV+v+kd++++++ LP
      CDO71716.1 111 VGNVVEILDVdpegeedganrdldsmrkGKCAVIKTSTRQTVFLPMIGLVPADKLKPGDLVGVNKDSYLVLDTLP 185
                     9*******99****************************************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   4.3e-14   5.1e-11       1      43 [.     398     440 ..     398     442 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 4.3e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedf 43 
                 dv+++eLA+ T+ + GA l+a+c eA++ Alr+g + ++ e+f
  CDO71716.1 398 DVNFEELARSTDEFNGAQLKAVCVEAGMIALREGATRLSHEHF 440
                 9************************************999999 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.2e-05     0.063      23      47 ..     239     263 ..     210     281 .. 0.81
   2 ?    4.6   0.0     0.031        37     122     149 ..     287     318 ..     271     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellra 47 
                  p  +l +G++G+GK+ ++r+++ +
  CDO71716.1 239 PPKGCLMYGPPGTGKTLMARACAAQ 263
                 45899***************99953 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.031
      AAA_16 122 llkrllallsrderplvlvlDdlq.....wade 149
                 l++++++l+++ + p ++++D+l+     ++d+
  CDO71716.1 287 LVRDAFELAKE-KAPAIIFIDELDaigtkRFDS 318
                 66777788888.778*********777664444 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.2e-05     0.015       7     104 ..     244     335 ..     239     362 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 l+ gp g+Gkt++a+a a   ++        +   +l +      + +  +  +++   a+e+   i+++DE+d i  k+  ++     +Vqr +L +l
  CDO71716.1 244 LMYGPPGTGKTLMARACAAQTKA----CYLKLAGPSLVQ----MFIGDGAKLVRDAFELAKEKApaIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL 334
                 67899999999999999988873....222222222222....23333344444444555555577************86666677778********99 PP

                 H CS
       AAA_2 104 e 104
                  
  CDO71716.1 335 N 335
                 7 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.4e-05     0.016       2     134 ..     243     362 ..     242     365 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHS.SEEE..-S CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsllee.rrllleeg 99 
                  l+ GppGtgK+ +a+  aa +++ ++  ++++      l++     +g +  +d     + + ++i+++DE++ + ++ ++s  s   e +r +le +
  CDO71716.1 243 CLMYGPPGTGKTLMARACAAQTKACYLKLAGPS------LVQMFI-GDGAKLVRDAFELAKEKAPAIIFIDELDAIGTKRFDSEKSGDREvQRTMLELL 334
                 589****************99988888877777......666555.34444444444444555888888999888888777777665433033444444 PP

                 SSEEE---......-EEEEEESS--.-TT-TTHHH CS
       AAA_5 100 gelvkaknddllerfrviatanpldrslnelspal 134
                 ++l ++++d   er+ via++n+ d     l+pal
  CDO71716.1 335 NQLDGFSSD---ERIKVIAATNRID----ILDPAL 362
                 555555543...5677888888777....555555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.6e-06    0.0054      36      94 ..     243     309 ..     216     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.6e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvleka..gdlaallt...nl...eekdvlfideih 94 
                 +l+yGpPG Gkt +a+  a++ ++     +gP l +   gd a l+    +l   ++  ++fide+ 
  CDO71716.1 243 CLMYGPPGTGKTLMARACAAQTKACYLKLAGPSLVQMfiGDGAKLVRdafELakeKAPAIIFIDELD 309
                 79*********************9999999*998774346766665411134111344688999876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00035      0.42       9      29 ..     244     264 ..     238     288 .. 0.85
   2 ?    3.4   0.1     0.073        87      85     126 ..     294     349 ..     282     357 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+ +r  + q 
  CDO71716.1 244 LMYGPPGTGKTLMARACAAQT 264
                 679************999886 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.073
      AAA_22  85 alraravielliiDEaqhlr.....s.........eealeeLrsllnl.srkgvqli 126
                  ++++a  +++ iDE + +      s          ++le L +l  + s+  +++i
  CDO71716.1 294 LAKEKAP-AIIFIDELDAIGtkrfdSeksgdrevqRTMLELLNQLDGFsSDERIKVI 349
                 4445555.9**********87666515667777878888888777666666666665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00011      0.13      21      42 ..     242     263 ..     223     267 .. 0.80
   2 ?    1.1   0.0       0.2   2.4e+02      76     117 ..     326     367 ..     305     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 EEEEE--TTSSTTHHHHHHHHH CS
        PhoH  21 ivfaiGpaGtGKtylavalave 42 
                  + + Gp GtGKt++a a+a++
  CDO71716.1 242 GCLMYGPPGTGKTLMARACAAQ 263
                 56789**************987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
                 --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-- CS
        PhoH  76 vdpylrplydaLkdllgaekvekllekgkievaplaymRGrT 117
                 v+  +  l ++L+ + ++e+++ +  +++i +++ a +R   
  CDO71716.1 326 VQRTMLELLNQLDGFSSDERIKVIAATNRIDILDPALLRSGR 367
                 66677889999999***********************99555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.04        48      66     108 ..      58      98 ..      56     138 .. 0.84
   2 !    9.9   0.0   0.00048      0.57      18      41 ..     241     264 ..     225     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.04
      AAA_11  66 AvDellerllrglldsegekykpkivRvgneeeriseavksvs 108
                 + De+l r+    +d++ ++ + +++R+ +e++ ++e++++  
  CDO71716.1  58 STDEILTRIRL--IDNDLKVMRSETLRLQHEQNVMKEKIRENG 98 
                 57999999655..99*****************66677666554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00048
      AAA_11  18 eitliqGPPGtgKTktivellsql 41 
                 + +l+ GPPGtgKT +  +  +q 
  CDO71716.1 241 KGCLMYGPPGTGKTLMARACAAQT 264
                 4589**********8877766665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8   3.4e+03      95     122 ..     163     192 ..     154     204 .. 0.72
   2 ?   12.6   0.1   5.4e-05     0.065      24      42 ..     242     260 ..     223     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.8
  Mg_chelatase  95 skpkpGe.islahnGvLfLDElp.efkrkv 122
                    k kpG+ +   +   L+LD lp ef+++v
    CDO71716.1 163 DKLKPGDlVGVNKDSYLVLDTLPaEFDSRV 192
                   46789984567788999***9976888776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.4e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                     l++GppG+GKt++a++ 
    CDO71716.1 242 GCLMYGPPGTGKTLMARAC 260
                   579*************975 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.6e-05     0.079       3      28 ..     244     269 ..     243     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
      AAA_33   3 llvGlpGsGKstlaerllkklgavll 28 
                 l+ G+pG+GK+  a+  +++++a+ l
  CDO71716.1 244 LMYGPPGTGKTLMARACAAQTKACYL 269
                 799***************99995544 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00017       0.2      48      70 ..     241     263 ..     233     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                 +++++ Gp+G+GK+ +a a + +
  CDO71716.1 241 KGCLMYGPPGTGKTLMARACAAQ 263
                 67899***********9887765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.7     8e+03      31      69 ..     188     235 ..     180     236 .. 0.57
   2 ?   10.0   0.1   0.00042      0.51       5      23 ..     243     263 ..     240     337 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.7
      AAA_24  31 tekGlksldadkfpdie.........swedfldevvelaaeladyktl 69 
                 ++  +k++++d+ p+ +         ++e++++++v   ++ +++kt+
  CDO71716.1 188 FDSRVKAMEVDERPTETytdigglekQIEELVEAIVLPMEQADKFKTI 235
                 555666666666554445555544444455555555547777777776 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00042
      AAA_24   5 iliyGpsgiGKTtlakel..g 23 
                 +l+yGp+g+GKT +a+    +
  CDO71716.1 243 CLMYGPPGTGKTLMARACaaQ 263
                 789**********99877544 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.5     0.022        26       1      43 [.      61     103 ..      61     103 .. 0.96
   2 ?    2.2   0.0      0.18   2.2e+02      11      46 ..     190     220 ..     186     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.022
        XhlA   1 eikerlerietkldnleervdkleekaaeaeekiknleedlkk 43 
                 ei+ r+  i+++l+ + ++  +l+  ++ ++eki ++ e++k+
  CDO71716.1  61 EILTRIRLIDNDLKVMRSETLRLQHEQNVMKEKIRENGEKIKQ 103
                 7999**************999********************95 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
        XhlA  11 tkldnleervdkleekaaeaeekiknleedlkkles 46 
                 ++++ +e +     e+ +e+++ i  le+++++l +
  CDO71716.1 190 SRVKAMEVD-----ERPTETYTDIGGLEKQIEELVE 220
                 555555555.....9999***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4073.56
//
Query:       CDO71717.1  [L=535]
Description: hypothetical protein BN946_scf184920.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-50  172.1   0.0    3.8e-50  170.5   0.0    1.7  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    8.1e-18   64.0   0.0    1.4e-17   63.3   0.0    1.4  1  Biotin_lipoyl    Biotin-requiring enzyme
    1.8e-14   53.8   0.1    4.2e-14   52.6   0.1    1.7  1  E3_binding       e3 binding domain
      3e-06   27.0   0.5    6.3e-06   25.9   0.5    1.5  1  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00046   20.9   0.0     0.0012   19.5   0.0    1.7  1  HlyD_3           HlyD family secretion protein
     0.0029   16.9   0.0     0.0052   16.0   0.0    1.3  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
  ------ inclusion threshold ------
      0.053   12.5   0.0       0.08   11.9   0.0    1.1  1  Fucokinase       L-fucokinase


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0   1.5e-53   3.8e-50       4     232 ..     256     531 ..     253     532 .. 0.92

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 1.5e-53
                   XXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHH.................................HHHHHHHTT-----HHHHHH CS
  2-oxoacid_dh   4 eervplsgirkaiakrlteskqeiphftlsdevdvtallelrke.................................lkekeakeekakltlldfli 67 
                   + +v+l+++r  + k++++s+  ip+ft+s ++d+t+l +l                                    l +   +++ ++lt+l++l+
    CDO71717.1 256 DVTVELNRTRWNMWKAMEKSL-AIPQFTCSTTLDLTELHNLMPIlnthipthylppstrsskpndvispasfhapppLPDVPPSAHYTRLTYLPILL 351
                   6789*****************.**************99999887888***************************99855555444458********* PP

                   HHHHHHHHH-GGGG-EE.........EESEEEE--SS--EEEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT..---GGGT..SS-SEE CS
  2-oxoacid_dh  68 kavalAlkefPelnasv........deeekeivvkkhvniGvAvatprGLlvPviknadkkslleiakelkelaekareg..klkpedl..eggtft 152
                   k++a+A+ e+P ++as+        ++ +++++++ h +i++A +tp+GL++P i+ ad+ s++ +a++lk la+  r+   +l+p+++  +ggt++
    CDO71717.1 352 KTLARAMLEWPLFRASIasssapgeSGAKPTMTIRPHADISIALSTPTGLYTPTIQAADTQSVYALAAQLKHLAHLGRQVpcALTPNEMpkKGGTVS 448
                   *****************999888877888*************************************************964489****97789**** PP

                   EE------.---------T.T-SEEEEE---..B--TTSTT-HT---EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 153 isNlGmlG.vtsftPiinp.pqvaIlgvgri.kerpvvkegelvvrkvmtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   +sN+G++G v+s+ P++ p + vaI+++gr+ +   v k+ + + r  + +s+saDHRv++Gae+++F++t+++++e+p++l+
    CDO71717.1 449 VSNVGGIGaVESAAPVLVPgGGVAIVAIGRAkWVWDVEKDPKGERRLKVGVSWSADHRVVEGAEMVAFMETWRSWVEQPQRLI 531
                   *******************999*********44444558889**************************************986 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   5.4e-21   1.4e-17       2      73 .]      34     106 ..      33     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 5.4e-21
                    EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                     +k+ +iGe ++e  v+++ vk+   V   ++l+ev+++K+++ei++p +G++k++ v+eG+  +vg+ l++i
     CDO71717.1  34 RFKLADIGEGITECeVIKWNVKPSTPVHTFDPLCEVQSDKASVEITSPFDGIIKDLFVQEGQVAKVGQDLCTI 106
                    6899****************************************************************99987 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   1.6e-17   4.2e-14       1      35 [.     191     226 ..     191     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.6e-17
                 SBE-HHHHHHHHHCT--TTTS-.--CTTTBE-HHHH CS
  E3_binding   1 vlAsPaaRklAkelGidLsdvk.GtGpgGRItkeDV 35 
                 vlA+P++R++A+++G+dLs ++ G+G++GRI k+D+
  CDO71717.1 191 VLATPSVRHYARQHGVDLSRLApGSGKNGRIEKRDI 226
                 79*******************66************9 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.5   2.4e-09   6.3e-06       2      35 ..      75     108 ..      68     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.4e-09
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDs 35 
                      +v+I++p++G ++ l+V++Gq+ k G+ L +++ 
       CDO71717.1  75 SVEITSPFDGIIKDLFVQEGQVAKVGQDLCTIEV 108
                      69****************************9986 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.7e-07    0.0012       2      39 ..      78     115 ..      77     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.7e-07
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllve 39 
                 +++p+dG++++l v+eg+v   g+ l +i   d+l+v+
  CDO71717.1  78 ITSPFDGIIKDLFVQEGQVAKVGQDLCTIEVADDLAVD 115
                 89***************************988888876 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-06    0.0052     106     143 ..      73     110 ..      61     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 106 qktvtvkapisGvVteknvreGqyvqpgdtlftiadls 143
                 + +v++++p++G++ ++ v+eGq+++ g+ l ti   +
  CDO71717.1  73 KASVEITSPFDGIIKDLFVQEGQVAKVGQDLCTIEVAD 110
                 6789****************************997655 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.08      74     121 ..     188     237 ..     179     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
  Fucokinase  74 gvtalavpstldigtnHGVfvlddq..sseeeeleirsvkkflhKpseee 121
                 g  +la+ps  +++++HGV +++    s ++  +e r ++ fl+++s + 
  CDO71717.1 188 GRDVLATPSVRHYARQHGVDLSRLApgSGKNGRIEKRDIDAFLQRGSTQA 237
                 5668***************99998888889999*************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3673.00
//
Query:       CDO71718.1  [L=476]
Description: hypothetical protein BN946_scf184920.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-25   88.7   1.1    2.4e-24   86.0   1.1    2.0  1  DUF21     Cyclin M transmembrane N-terminal domain
     0.0031   17.9   0.3       0.82   10.2   0.0    2.7  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   1.1   2.7e-28   2.4e-24       2     169 ..      29     209 ..      28     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 2.7e-28
       DUF21   2 iivlllllsaffsgaEtAlvslsrlrl............eelaekgk.......kkakr.....llkllknp.erlLstlligntlvnillsalatalf 75 
                 + ++l+l+ ++f+g++++l+ l++l+l            ++ a+kg        k         +l+ll +  +++L++ll+gn +vn  l++++++++
  CDO71718.1  29 VSIALVLAGGVFAGLTLGLMGLDELHLrvlaassdspeeRKNAQKGLclssvpcK---VcshppVLRLLGRGrHWVLVVLLLGNVIVNESLPIFLDSAL 124
                 678999*********************9999988888664444444455555441...033445667776666*************************9 PP

       DUF21  76 vellaegalavviatviv.tllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlilesesepavseeelkklveeseee 169
                 +  +         a v++ t++i++fg i+P+++ ++y ++i + +ap++   m+l++P++w++ kll+++l+++++++++++elk++++ +++ 
  CDO71718.1 125 GGGIP--------A-VAIsTTMIVIFG-IIPQAVSVRYGLSIGASCAPIVLAMMYLFAPVAWPIAKLLDYVLGHDEAHTYKKAELKSFLAFHRQG 209
                 99874........3.555488888887.************************************************************9998775 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3    0.0041        37       1      35 [.     232     269 ..     232     287 .. 0.74
   2 !   10.2   0.0   9.1e-05      0.82       8      55 ..     305     355 ..     298     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0041
                 HHHHSBS..SCEEEETTSB.HHHHHHHHHHHTSSEEEE CS
         CBS   1 Vgdimtr..dvvtvppdtt.leealelmrekgvsrlPV 35 
                 V+dimt+  dvvt++ d    ++ ++ + ++g+sr+PV
  CDO71718.1 232 VEDIMTPmnDVVTISADRVlDHDTVDYILRSGYSRIPV 269
                 78999999999999999444566666655899999999 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.1e-05
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE....ETTTBEEEEEEHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV....dedgklvGivtlrDllral 55 
                  ++ +pp+ +  +al+ + ++g  +l+ +      +g  +G++tl+D+++ +
  CDO71718.1 305 ILPEAPPTINCFQALDYF-QTGRAHLLLLshtpGIEGGAIGVITLEDIIEEM 355
                 556688999999999999.8776688666777766677***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3242.26
//
Query:       CDO71719.1  [L=538]
Description: hypothetical protein BN946_scf184920.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-14   53.5   0.0    6.3e-14   51.7   0.0    1.9  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
      6e-08   32.4   0.0    9.7e-08   31.8   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    3.9e-07   30.7   0.0    8.4e-07   29.6   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      2e-05   24.4   0.0    3.4e-05   23.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    0.00012   22.7   0.0    0.00026   21.6   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    0.00047   19.8   0.0    0.00098   18.7   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0017   18.0   0.0      0.028   14.1   0.0    2.2  2  Cons_hypoth95    Conserved hypothetical protein 95
     0.0034   18.1   0.0     0.0089   16.8   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
     0.0042   16.5   0.0     0.0077   15.7   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.024   14.3   0.0       0.26   11.0   0.0    2.3  2  UPF0020          Putative RNA methylase family UPF0020
      0.025   14.4   0.0      0.077   12.8   0.0    1.7  2  Methyltransf_23  Methyltransferase domain
       0.05   13.6   0.0      0.091   12.7   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
      0.064   12.5   0.0        3.8    6.7   0.0    2.3  2  RsmJ             Ribosomal RNA large subunit methyltransferas


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.2     3e+03     229     251 ..     288     310 ..     275     314 .. 0.78
   2 !   51.7   0.0   4.6e-17   6.3e-14     179     324 ..     353     491 ..     345     536 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.2
  tRNA_U5-meth_tr 229 teiakssveaaqyniaankidnv 251
                        ia + ++  ++ + +n idn+
       CDO71719.1 288 CPIATPVINQGLVPVRQNVIDNI 310
                      45899999999999999999998 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 4.6e-17
  tRNA_U5-meth_tr 179 ftqPnaavnekmleWalevtqeskg.dllelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkref 271
                       t   a+v e++ +  +e t +++   l++ ycG G f+++la +f++v   e++  s+ aaq n + n +   +i  + a + ++ ++ +++f
       CDO71719.1 353 VTDQKATVRERVGDMLFEYTADERPtHLVDAYCGSGLFAITLAPHFTRVAGIELSAESIRAAQRNAELNGLAPSKIS-FVAGDAANIFDAVQDF 445
                      566677777777777788776554439********************************************988865.5567788999999999 PP

  tRNA_U5-meth_tr 272 rrlkgidlksyafetifvdPPraGldketvklvkkye..rilyiscnPetlkenl 324
                       r +          ++++dPPr G d+  ++ + ++    ++y+scn +t + ++
       CDO71719.1 446 PRAR---------TALVIDPPRKGTDERFIEQMLAFGagTVVYVSCNVHTQARDV 491
                      9976.........56899************9888885337*********988766 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     7e-11   9.7e-08       3      83 ..     379     460 ..     377     468 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 7e-11
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgv.sdkitlvlgdvfellaklklekikvdlvflSpPwGG 83 
                       ++D+++G+G  +i++a +f++v +ie + e +  aq+Nae+ g   +ki +v gd  +++  ++     +  +++ pP  G
       CDO71719.1 379 HLVDAYCGSGLFAITLAPHFTRVAGIELSAESIRAAQRNAELNGLaPSKISFVAGDAANIFDAVQDFPRARTALVIDPPRKG 460
                      689*****************************************9679*********9998887755444556666677655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   6.1e-10   8.4e-07       2      58 ..     381     438 ..     380     457 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 6.1e-10
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGB CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedl 58 
                      +d+ cG+G +++ la ++   +v g+++s+e ++aa+++ae +gl   +++fv gda ++
       CDO71719.1 381 VDAYCGSGLFAITLAPHF--TRVAGIELSAESIRAAQRNAELNGLapsKISFVAGDAANI 438
                      5888*************9..9*******************9999999**********886 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.4e-08   3.4e-05       4      66 ..     377     439 ..     374     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.4e-08
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdiee.l 66 
                       ++++D+ CG+G +++ la       +v Gi+ s+e+i+ A+ na+ +gl    ++F +gd+ + +
       CDO71719.1 377 PTHLVDAYCGSGLFAITLAPHF---TRVAGIELSAESIRAAQRNAELNGLApsKISFVAGDAANiF 439
                      568899*************543...35***********************999********98844 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.9e-07   0.00026       3      55 ..     383     438 ..     381     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.9e-07
                      ET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT CS
  Methyltransf_11   3 vGcGtGrlaealakrgarvvgvDlskemlklakekaseegl...kvefvvadaekl 55 
                      + cG+G++a  la +++rv g++ls+e +++a+++a+ +gl   k++fv +da ++
       CDO71719.1 383 AYCGSGLFAITLAPHFTRVAGIELSAESIRAAQRNAELNGLapsKISFVAGDAANI 438
                      55**************************************9***********9874 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.1e-07   0.00098      23      92 ..     368     438 ..     364     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.1e-07
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTT CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvlee 92 
                 L e+  +e+  +++D  cG G+ +++la +  +  v  ++ +a+++++a++n+e n+l+   +++va d+ + 
  CDO71719.1 368 LFEYTADERPTHLVDAYCGSGLFAITLAPHFTR--VAGIELSAESIRAAQRNAELNGLApskISFVAGDAANI 438
                 5555556666789***************98888..9**********************999988887765432 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.16   2.1e+02     117     137 ..      95     115 ..      62     140 .. 0.76
   2 !   14.1   0.0     2e-05     0.028      28     160 ..     360     490 ..     354     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.16
                    EEE--SSSTTCH.HHHHHHHH CS
  Cons_hypoth95 117 vflDPPyakellieevlelle 137
                       DPP+++++ +e +++ l 
     CDO71719.1  95 LDWDPPFEQSQELELTVSCLS 115
                    457*******99888888776 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2e-05
                    HHHHHHHHHCCC...HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T.TTEEEEES-HHHHCTS--SS-EEEEEEE CS
  Cons_hypoth95  28 vrealFnilaae...iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee.etaelkedaleallklakkkeefdivfl 119
                    vre + ++l ++    +  +++D ++GsG  ++  l     ++  +e ++e +++ ++n e  +l   +++ +  da++ ++      +      +
     CDO71719.1 360 VRERVGDMLFEYtadERPTHLVDAYCGSGLFAI-TLAPHFTRVAGIELSAESIRAAQRNAELNGLAPsKISFVAGDAANIFDAVQDFPRARTALVI 454
                    56665555555544456788*********9998.688899*********************9998877999999999999999988888889999* PP

                    --SSSTTCH.HHHHHHHHHTT-EEEEEEEEEEEECCSSS-- CS
  Cons_hypoth95 120 DPPyakellieevlelleekkllkenalvvvetekekelpe 160
                    DPP +  +  e+ +e++    ++  +++v+v  + +++  +
     CDO71719.1 455 DPPRKGTD--ERFIEQML---AFGAGTVVYVSCNVHTQARD 490
                    ***77665..67776666...67777888877777766555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.5e-06    0.0089       5      60 ..     385     437 ..     381     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.5e-06
  Methyltransf_12   5 cGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlld 60 
                      cG+G ++  l+++  ++++ g+++s+++i +a+++ a+ +++  +++ + a d+++
       CDO71719.1 385 CGSGLFAITLAPH--FTRVAGIELSAESI-RAAQRNAELNGLAPSKISFVAGDAAN 437
                      *************..**************.**********9999999999998764 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.6e-06    0.0077     161     214 ..     376     429 ..     366     444 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.6e-06
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.kle 214
                 + ++++D  +GSG+ ai  a     +v ++ +   ++++a++NaelN+++  k++
  CDO71719.1 376 RPTHLVDAYCGSGLFAITLAP-HFTRVAGIELSAESIRAAQRNAELNGLAPsKIS 429
                 445789***********8765.6789*********************99985553 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       7.2     1e+04     128     166 ..      98     136 ..      97     137 .. 0.82
   2 ?   11.0   0.0   0.00019      0.26       7     115 ..     355     438 ..     350     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 7.2
                 ----------HHHHHHHHHHHHHHHHHH-TT..-EEEEE CS
     UPF0020 128 npPYGerlgskkalekLYseflrelkrvlrgggrlvllt 166
                 +pP+ ++ + + ++  L ++++++l+  ++++ r v++t
  CDO71719.1  98 DPPFEQSQELELTVSCLSPSTGNSLSIATANERRWVIVT 136
                 799999999999999999999999998888877777776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00019
                 S---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-G.GG CS
     UPF0020   7 ngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvg.dl 104
                 +++a+ +e++   l + +  ++ + l+D  CGsG ++I  a   +++a                          g++l ++ +++a++Nae  g++  +
  CDO71719.1 355 DQKATVRERVGDMLFEYTADERPTHLVDAYCGSGLFAITLAPHFTRVA--------------------------GIELSAESIRAAQRNAELNGLApSK 427
                 5689999999999999999999999*************9999999999..........................7777777777777777766654256 PP

                 EEEEE--GGG- CS
     UPF0020 105 iefsqadaakL 115
                 i+f++ daa++
  CDO71719.1 428 ISFVAGDAANI 438
                 67777666665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   2.5e+03     102     149 ..     307     357 ..     300     361 .. 0.67
   2 ?   12.8   0.0   5.6e-05     0.077      16      62 ..     368     445 ..     355     490 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
  Methyltransf_23 102 lrqiatllkpgGylllseplasl...kedrllldwlyl.vpagrhisffsar 149
                      +++ia+  k g+ lll+++l++      d++++  + + +++g+h+++ + +
       CDO71719.1 307 IDNIAK-YKNGATLLLRDSLRPEpsgGDDEAARTTTSIvAEEGDHVCVTDQK 357
                      555665.566888899997776644457777777765514555999988765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.6e-05
  Methyltransf_23  16 llpk..lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.............................k 62 
                      l+++  ++++  ++d  cG+G ++  l+++++ v+g++ls e +  a+                              
       CDO71719.1 368 LFEYtaDERPTHLVDAYCGSGLFAITLAPHFTRVAGIELSAESIRAAQrnaelnglapskisfvagdaanifdavqdF 445
                      44444478999999***************************9999887888887777777776665554444444440 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.6e-05     0.091      13      90 ..     364     436 ..     356     468 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.6e-05
  Methyltransf_32  13 vakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsie 90 
                      v ++l e++++++++++vD+ +G g  + +la     + ++v gi++++e +++a++ ae  g  + +++sf  ++ +
       CDO71719.1 364 VGDMLFEYTADERPTHLVDAYCGSGLFAITLAP----HFTRVAGIELSAESIRAAQRNAELNG-LAPSKISFVAGDAA 436
                      5566667788999******************99....689***********998877665444.55577777766655 PP

>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.03        42     132     149 ..      98     115 ..      84     126 .. 0.88
   2 ?    6.7   0.0    0.0027       3.8      60     140 ..     379     463 ..     346     472 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.03
                 ----SSCCHHHHHHHHHH CS
        RsmJ 132 DPPyeakdeydrvvaalr 149
                 DPP+e+++e++  v+ l+
  CDO71719.1  98 DPPFEQSQELELTVSCLS 115
                 9***********999886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0027
                 SS--EEE-HHHHHHHHS-TT-EEEEE---TTHHHHH..HHHTTT-..TTEEEESS-HHHHHHHS-S-TTS-EEEEE----SSCCH CS
        RsmJ  60 eklryYpGspllarrllReqDrlvlteLhpkdaalL..kaelakd..krvrvkkadGfaalkaklppkekRglvliDPPyeakde 140
                 + ++ Y Gs l a +l  +  r+  +eL  +  ++   +ael++   ++++  ++d  +   a       R+ ++iDPP   +de
  CDO71719.1 379 HLVDAYCGSGLFAITLAPHFTRVAGIELSAESIRAAqrNAELNGLapSKISFVAGDAANIFDAVQDFPRARTALVIDPPRKGTDE 463
                 44899************************998665511566765411566777777777777777777789999*****776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3471.42
//
Query:       CDO71720.1  [L=404]
Description: hypothetical protein BN946_scf184920.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-73  246.2   0.0    2.5e-73  245.9   0.0    1.1  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.0   1.4e-77   2.5e-73       2     199 ..     136     395 ..     135     396 .. 0.98

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 1.4e-77
  PS_Dcarbxylase   2 neffvrklkdgaRpidddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasess................................. 63 
                      eff+rklkdgaRpi+  ++ +vsPaDgr+l+ g i++g+++qvKg+tysl++Llg a++ s                                 
      CDO71720.1 136 GEFFYRKLKDGARPIA--DAVLVSPADGRVLHLGVIKDGKIEQVKGSTYSLDALLGVARPGSpapssigfpdrkmeevdhkqfaeingidftsvr 228
                     69*************3..346***************************************99********************************9 PP

  PS_Dcarbxylase  64 adsfkngyfvviyLspgdyHryhaPvsgkveerrhipGellsvnpsalkelrglftlneRvvlview.kGkvavvpvGatnvgsivln....... 150
                      ++ ++  f+viyL+pgdyHr+h+P+s++ve+rrh+ G+l+sv+p ++k+l++lf+lneRv+l+++w +G++++vpvGatnvgsi++n       
      CDO71720.1 229 TKPGNDTFFIVIYLAPGDYHRFHSPTSWVVERRRHFVGDLFSVSPWMAKRLPNLFVLNERVALLGRWrYGFFSMVPVGATNVGSIKINfdqalrt 323
                     9999**************************************************************989************************** PP

  PS_Dcarbxylase 151 .......................vlkgdelkkGeelGyFqfGStvvlvfeagkfieslvekgqkvkmGeklg 199
                                            +l+g++l+kG+e+G+F +GSt+vlvfea+ +++++v +g+kvk+G++lg
      CDO71720.1 324 nvgsrrehpvgtyteavysgasaILNGQPLNKGDEMGGFCLGSTIVLVFEAPYSFKFDVAAGEKVKVGQRLG 395
                     ***********************99***************************9999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2895.13
//
Query:       CDO71721.1  [L=1146]
Description: hypothetical protein BN946_scf184920.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-113  378.6   7.2    4.8e-67  226.9   0.9    3.3  3  DHC_N1          Dynein heavy chain, N-terminal region 1
  ------ inclusion threshold ------
       0.04   14.0   0.1        1.5    8.9   0.1    2.8  2  Pro_3_hydrox_C  L-proline 3-hydroxylase, C-terminal
      0.056   13.9   0.4         21    5.6   0.0    3.5  2  FAA_hydro_N_2   Fumarylacetoacetase N-terminal domain 2
      0.069   13.7   0.0       0.19   12.3   0.0    1.7  1  Gly_radical     Glycine radical


Domain annotation for each model (and alignments):
>> DHC_N1  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.9   1.1e-70   4.8e-67       1     339 [.     250     586 ..     250     589 .. 0.94
   2 !  151.4   0.0   7.8e-48   3.5e-44     371     557 ..     594     782 ..     584     786 .. 0.90
   3 !    3.0   0.2    0.0068        31     143     207 ..    1017    1080 ..     999    1121 .. 0.64

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 1.1e-70
      DHC_N1   1 vnaleslvieWikqIkevlkedsdgrkegplaEieFWrsreanLssieeqlkspevkkvlkvLkaakssyleafkal.....dtelkkaleeAkdnvky 94 
                 +n+l++ v++Wik+I++v++ ++d +++++++Ei+FW s e++L++i  ql+s+ev+ v+++L++ak+     f+a+     dt+l++a+e++++++++
  CDO71721.1 250 LNTLQNQVNQWIKSIQTVTRLNRDVSSGTASQEINFWLSLERALEGIDAQLRSDEVNMVIDCLRHAKR-----FHATvsflaDTGLSDAMETVRKYNQL 343
                 689*****************************************************************.....666666668***************** PP

      DHC_N1  95 LktLekpledLest.dleeikellpsllnairliwkiSryYntperivsLlekisnqlieqckkylnpeelfgqeveeaikklkeaielleawkeeyee 192
                 +k++  pl++L+s+ dle+i+e++  ++ +i++++k S  Y + +r+++L+e+is+++ eq+ ++l+ ++l+  + + +++ l+++++++++w+++++ 
  CDO71721.1 344 MKDF--PLNELLSAtDLEKIQEAVVLIFGHINRKLKLS-PY-PIRRALPLVEAISRDFNEQLLRVLTSHRLLYTPYDTFERLLSQTMAIFRTWDDHMK- 437
                 ****..*****9955***********************.**.9************************9998855778********************5. PP

      DHC_N1 193 ktrekleespkekpwefdeksiFarldafleRlekllelfetieqfsklekv...ggtkgkelegqieeileefeeaveklksksydvLdvsaee...f 285
                 +  +  +e ++++  +f   ++     +  +R+++l++ ++++eq+  +  +    g +g+e+ g   ++++e++ea+e++k  ++dvLdvs e+   +
  CDO71721.1 438 EFTNIAREVQRKRGEKFIPIKVVPAHAKLQDRIRYLRDWRKQHEQLAVMTAPtkgLGGVGSEIGG--IDMEAEVKEAYEVMK--RIDVLDVSMEGseiW 532
                 888666677777778888888888999999****************9999999775578899999..789999*********..*************** PP

      DHC_N1 286 eadfkeFkerikdlerrlqaiinqafedasslesalellrkfesllerpkikaa 339
                  a+ ++++er++++e++++a++++++++a+++++++ ++ kf+ l+ rpk+k++
  CDO71721.1 533 AAAENAYNERVARVENQIIARLRDRLGTARNANEMFRVFSKFNALFVRPKFKTQ 586
                 **************************************************9987 PP

  == domain 2  score: 151.4 bits;  conditional E-value: 7.8e-48
      DHC_N1 371 aplakn.mPpvaGaiiwarqlerrieepmekfee.egegllkteegkkvkkkynelakkLkeyerklfeeWleeveekseeklkrpLLvredettk..l 465
                 ++++ + +Pp++Gaiiwarq+er+++++m+++e+ +g+g++ ++eg+k++++   ++kkL+   r ++++Wl+++  +  +  +  L+++ + ++   +
  CDO71721.1 594 HMSQMRdLPPISGAIIWARQIERQLQTYMKRVEDvLGKGWELYAEGQKLQSESSAFRKKLD--VRPVYDAWLHDIARRDMG-VGGRLFEIVRLRGGgyQ 689
                 5777777**************************99**************************..*************88888.5556**99874444887 PP

      DHC_N1 466 levNFdpellallrEvkylqrlgfevPesakniakqeeklrkyaesLellvreynrilesllpver..pLlaeelkeldaklepGltklnWnsl 557
                 l vNFdp++++l++Ev++l + +f+vP++++n+ak++++++++a sL+++vr+y ++l+ +++      L+ae+ +e ++++++G++ ++W++ 
  CDO71721.1 690 LAVNFDPQIITLFKEVRNLLWQNFQVPHAITNMAKDAKRVYPHAVSLMETVRTYGQTLDLVENNKGieWLVAEYRNEAQRMVTRGMN-IRWDHF 782
                 78*********************************************************996654466*******************.***986 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.0068
      DHC_N1  143 Llekisnqlieqckkylnpeelfgqeveeaikklkeaielleawkeeyeektrekleespkekpw 207 
                  L+e+  ++l + + k l+ ++l++ e+e + ++l ++++ +++  +e+ +k+r++ ++s+++k++
  CDO71721.1 1017 LIEQKVQSLKDYVAKWLQFQSLWDLEAEYVFNRLGDSLAHWQQLLTEI-KKARSTFDTSETQKSF 1080
                  555555566666666666666665566666666666666666666666.3666666666555544 PP

>> Pro_3_hydrox_C  L-proline 3-hydroxylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.069   3.1e+02      57      76 ..     649     669 ..     646     673 .. 0.90
   2 ?    8.9   0.1   0.00034       1.5      15      77 ..     913     976 ..     906     979 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.069
                     CTBSS-TTHHHH.HHHHHHHH CS
  Pro_3_hydrox_C  57 ffekvpieasyd.WLkeicrr 76 
                     f +k +++ +yd WL +i+rr
      CDO71721.1 649 FRKKLDVRPVYDaWLHDIARR 669
                     889999*****99******98 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00034
                     --------B---HHHHHHHHGGGGT--TTTHHH.HHHHHHHHCCTBSS-TTHHHHHHHHHHHHH CS
  Pro_3_hydrox_C  15 irpelveraeltddleerllalsevvsranykd.ivflLaklhffekvpieasydWLkeicrrr 77 
                     ++ + +++++  d   ++ lal+ +v +  +++ ++fl   +     v i++ ++WL  +cr r
      CDO71721.1 913 LTSKRRDKRAKNDKSSDGTLALTPIVHEIRIQNqVIFLDPPIEHARAVWIHQLHEWLGTVCRLR 976
                     566778888899999*************9997537788889********************965 PP

>> FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.012        53      29      67 ..     247     285 ..     231     306 .. 0.90
   2 ?    5.6   0.0    0.0047        21      27      65 ..    1042    1080 ..    1038    1092 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
  FAA_hydro_N_2  29 seiaptlqaaLdnWdevepaLeelyeaLnagtakeafaf 67 
                    s++ +tlq+ +++W +  + +++l +++++gta++ ++f
     CDO71721.1 247 SSFLNTLQNQVNQWIKSIQTVTRLNRDVSSGTASQEINF 285
                    56789***************************9998887 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0047
  FAA_hydro_N_2   27 daseiaptlqaaLdnWdevepaLeelyeaLnagtakeaf 65  
                     +a+ +++ l + L +W+++ ++++++ +++++++++++f
     CDO71721.1 1042 EAEYVFNRLGDSLAHWQQLLTEIKKARSTFDTSETQKSF 1080
                     67889999**********************999977665 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.3e-05      0.19      11      95 ..     255     344 ..     250     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.3e-05
                  HHHCHCHHCCCCCCTSECGCETTEETTECC...CCHHHHHH.HCC-CCCCCCHHCCCCC.CT-SECEEEEETCCCHCCCCCSCGGGCCEE CS
  Gly_radical  11 rdkegplaslnSvakldyevaldgislnlk...avpdalgk.eeeerienlatlldgyf.eggfhlnvnvvsretLldAqehpekypqlt 95 
                  ++++++++s++ v +l+ +v ++  s+ ++    +++al+  +++ r ++++ ++d    ++ fh  v  + +  L dA+e+  ky ql+
   CDO71721.1 255 NQVNQWIKSIQTVTRLNRDVSSGTASQEINfwlSLERALEGiDAQLRSDEVNMVIDCLRhAKRFHATVSFLADTGLSDAMETVRKYNQLM 344
                  67899999***********999999999984445788998889999**********98767***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7833.60
//
Query:       CDO71722.1  [L=549]
Description: hypothetical protein BN946_scf184920.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-58  197.8   0.0    6.6e-58  196.1   0.0    1.7  1  Pkinase        Protein kinase domain
    6.2e-27   94.5   0.1    4.4e-19   68.8   0.0    2.2  2  Pkinase_Tyr    Protein tyrosine kinase
    0.00032   20.1   0.1     0.0063   15.9   0.0    2.2  2  Kinase-like    Kinase-like
    0.00074   19.5   0.3      0.089   12.7   0.0    2.6  2  APH            Phosphotransferase enzyme family
     0.0024   17.3   0.6     0.0092   15.3   0.0    2.1  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.096   12.3   0.0       0.23   11.0   0.0    1.6  1  RIO1           RIO1 family
       0.12   11.2   0.0        0.2   10.5   0.0    1.4  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   2.6e-61   6.6e-58       2     264 .]     154     453 ..     153     453 .. 0.91

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 2.6e-61
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 + + ++G+G++G+V+ a++++t++  A+Kk++k+   k++e ++vl E  il  +k p +vrl+++f++ +++yl +eyv+gg++ +ll++ g+l+ee 
  CDO71722.1 154 QIIAQVGQGGYGEVFLARKSDTREVCALKKMRKRTLFKMDEvRHVLVERDILTATKTPWLVRLLYAFQDREHVYLAMEYVPGGDFRTLLNNAGVLKEEI 252
                 67899*********************************9999********************************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......................................BCTTTSC CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk......................................ltsfvgt 160
                 a++++++++ +++ lH+ g iHrDlKpeN+L+d +g++K+tDFGla+ + + ++                                      ++s+vg+
  CDO71722.1 253 ARFYISEMFVAVNELHRLGYIHRDLKPENFLLDGSGHVKLTDFGLATGALNPQRieslkvkldkvkdneivhrstlerrsiyrstrqqmpryADSIVGS 351
                 ***********************************************999999899******************************************* PP

                 GGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS..-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 161 seYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei..seeakdllkkllkkdpkkRltaee 257
                 ++Y+APEvl++++ys +vD+WslG+il+e+l+g ppfsg++ + +++++ld+    + +l+    + pe++ +  s+ a d +++l++    +  t ++
  CDO71722.1 352 PDYMAPEVLRGKPYSFSVDYWSLGCILFEFLAGFPPFSGRTPE-ETWTNLDK---WTSVLQRPVYDAPEDQVFnlSDIAWDAITRLIAHASVRYSTLSQ 446
                 **************************************66665.58888888...66677644444444443333888888888888887777777888 PP

                 HHTSGGG CS
     Pkinase 258 llqhpyl 264
                 + +h ++
  CDO71722.1 447 VRDHGFF 453
                 8877776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.7e-22   4.4e-19       2     153 ..     154     301 ..     153     317 .. 0.90
   2 !   23.7   0.0     1e-08   2.6e-05     167     227 ..     350     410 ..     330     429 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.7e-22
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  ++  ++G+G +G+V+ ++ +    ++++ +a+K++++++  + +e +++l e +i++++k p +v+ll +  ++e++++ +eyv+gGd+++ L++   
   CDO71722.1 154 QIIAQVGQGGYGEVFLARKS----DTREVCALKKMRKRTlfKMDEVRHVLVERDILTATKTPWLVRLLYAFQDREHVYLAMEYVPGGDFRTLLNNA-- 245
                  56789***********9988....888999***997654226777999*********************************************997.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                    l+ +    ++ ++  +++ L++  ++Hrdl   N Ll+ + +vk++DfGLa   
   CDO71722.1 246 GVLKEEIARFYISEMFVAVNELHRLGYIHRDLKPENFLLDGSGHVKLTDFGLATGA 301
                  88888888889999**************************************9866 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1e-08
                  SGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHT.TEES-BB CS
  Pkinase_Tyr 167 lpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklke.gkrlekp 227
                   +  +mapE+l+ k ++ + D Ws G +l+E +  g  p++g ++ee+ ++l++    l++p
   CDO71722.1 350 GSPDYMAPEVLRGKPYSFSVDYWSLGCILFEFLA-GFPPFSGRTPEETWTNLDKwTSVLQRP 410
                  5678***************************999.*******99999998885403344444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.5e-06    0.0063     142     189 ..     250     296 ..     242     302 .. 0.89
   2 ?    1.6   0.0     0.055   1.4e+02     227     256 ..     365     394 ..     358     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.5e-06
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                  e+iar ++  ++   + +L+ +g +h +++++n+lld  g ++l++f+
   CDO71722.1 250 EEIARFYI-SEMFVAVNELHRLGYIHRDLKPENFLLDGSGHVKLTDFG 296
                  67888888.567777899****************************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.055
  Kinase-like 227 mthkldaWqlGlviyriwclklPltlatee 256
                  +++++d W lG   +   +   P+   t+e
   CDO71722.1 365 YSFSVDYWSLGCILFEFLAGFPPFSGRTPE 394
                  89*************998888888888876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0091        23      35      86 ..     187     243 ..     155     270 .. 0.62
   2 !   12.7   0.0   3.5e-05     0.089     163     197 ..     267     299 ..     246     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0091
                 HHHHHHHHHHHHHHHTT-....B--B-CTTBS-EEETTEEEEEEE----EE-SS.HH CS
         APH  35 eeirrevallrlLakagv....pvPevlagdtddeeigllfalieyvpgrsllr.kl 86 
                 +++ ++ ++ ++L ++++    ++P ++ +    ++++++++++eyvpg ++++  +
  CDO71722.1 187 RTLFKMDEVRHVLVERDIltatKTPWLVRLLYAFQDREHVYLAMEYVPGGDFRTlLN 243
                 3556666666666666666655444444444478899999**********9999622 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.5e-05
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                   + + +H+Dl+p N+l+d + g+v  + Df++a+
  CDO71722.1 267 LHRLGYIHRDLKPENFLLD-GSGHV-KLTDFGLAT 299
                 457899*************.66666.588888876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.6      0.41   1.1e+03      18      64 ..      63     110 ..      52     151 .. 0.70
   2 !   15.3   0.0   3.6e-06    0.0092     114     167 ..     247     296 ..     229     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.41
         Kdo  18 rttwfvvaekvnaalrkyyrggllgklskdlyrfk.lgrtravrEfrl 64 
                 r++ f v e+  ++  + +r+ ++++l+   y f+ lg+  a++E r+
  CDO71722.1  63 RQGNFKVWERELLDSPEVRRKATVAQLYFLDYYFQlLGYIAARKERRA 110
                 556666666655566667777777777654455555777777777664 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.6e-06
         Kdo 114 elaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 +l+ee  r  + +   ++++lhr+g  H+dl + n+ll+  +    ++ l D+ 
  CDO71722.1 247 VLKEEIARFYISEMFVAVNELHRLGYIHRDLKPENFLLDGSG----HVKLTDFG 296
                 46677777777888889**********************999....88888885 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.1e-05      0.23      81     166 ..     225     312 ..     218     325 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.1e-05
                 TE.EEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETTSTTHHHHHHH CS
        RIO1  81 hv.lvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveldhpnalefLer 166
                 hv l me++   g   + l+++   +ee+++ y   +      +++ g++H DL   N l+d   +v + D++ a+ + +p+  e L+ 
  CDO71722.1 225 HVyLAMEYVP-GGDFRTLLNNAGvLKEEIARFYISEMFVAVNELHRLGYIHRDLKPENFLLDGSgHVKLTDFGLATGALNPQRIESLKV 312
                 5438899999.444455566666447777776666555555566699**************99889*******9999999999888875 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     8e-05       0.2     220     254 ..     263     298 ..     119     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8e-05
  Haspin_kinase 220 yvaE.tkfeFEHRdLhldniLvdknlnvtlidlkls 254
                    +v E  ++ + HRdL+ +n L+d +++v l d+ l+
     CDO71722.1 263 AVNElHRLGYIHRDLKPENFLLDGSGHVKLTDFGLA 298
                    55553578899**********************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3687.10
//
Query:       CDO71723.1  [L=126]
Description: hypothetical protein BN946_scf184920.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-18   65.4   2.0      8e-18   65.1   2.0    1.2  1  Med21            Subunit 21 of Mediator complex
     0.0028   17.8   0.7     0.0042   17.2   0.7    1.2  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
     0.0062   16.8   0.4      0.013   15.8   0.1    1.6  2  GAT              GAT domain
  ------ inclusion threshold ------
      0.039   14.5   2.5      0.069   13.8   2.5    1.4  1  Com_YlbF         Control of competence regulator ComK, YlbF/Y
       0.11   13.2   0.3       0.14   12.9   0.3    1.1  1  DUF2203          Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   2.0   2.2e-21     8e-18      19     141 ..       1     113 [.       1     116 [. 0.85

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.2e-21
       Med21  19 fyatlgylntshdpsplseqdpsspsaapalakipqeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgigsseeeqeerikeLeeelrev 117
                 + ++++yl+ +++++++s++ p ++s ap++           +pd  e    + +el++dli+k++q+eyLI+sLP+    ee+q+er++ Leee+ ++
  CDO71723.1   1 MSSSIAYLTSRANFVQVSQEIPITKSRAPEKYD---------PPDVFEGHTPNKKELVTDLIVKAKQVEYLIQSLPEP-DPEEKQVERLQALEEEMSQA 89 
                 67899*************777754444443332.........3455555567889*********************99.68999*************** PP

       Med21 118 eeereekvkekeellkkveellra 141
                 ++e+ ++v+++++l +++ ++lr+
  CDO71723.1  90 NAEYMQAVNRAKNLHAQICDVLRN 113
                 ******************999986 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   1.2e-06    0.0042      23      77 ..      65     122 ..      47     124 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                      --G.GGHH.HHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHH CS
  PEP-utilisers_N  23 eveaedve.aelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelle 77 
                      ++++ d+e +++erl+ Ale+  ++ +a + +a   +++ +a+i ++ + +l+Dp++l+
       CDO71723.1  65 SLPEPDPEeKQVERLQ-ALEEEMSQANAEYMQAvnrAKNLHAQICDVLRNMLDDPDILQ 122
                      4455555525555554.55555555555444444533333799*************987 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.7e-06     0.013      18      75 ..      41      97 ..      30      99 .. 0.90
   2 ?   -1.7   0.0         1   3.6e+03       5      13 ..     109     117 ..     105     125 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.7e-06
         GAT 18 eellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlk 75
                +++ ++el+++L  + k+++  iq l e  ++e+  +++l  l +e++++ + Y +++
  CDO71723.1 41 HTPNKKELVTDLIVKAKQVEYLIQSLPEPDPEEK-QVERLQALEEEMSQANAEYMQAV 97
                456789***********************9***9.9******************9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
         GAT   5 klLsemLss 13 
                 ++L  mL+ 
  CDO71723.1 109 DVLRNMLDD 117
                 678888876 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.5   1.9e-05     0.069      32     102 ..      43     113 ..      41     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHTT----HHHHH..HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Com_YlbF  32 eelqklikefkklqkelqekqmkgeelkeeekk..elqelkeeldknplvkeyleaeqelnellqevnkiiae 102
                 ++ ++l++++  + k+++   ++ +e++ eek+  +lq+l+ee+ +    +ey++a ++ ++l +++++++ +
  CDO71723.1  43 PNKKELVTDLIVKAKQVEYLIQSLPEPDPEEKQveRLQALEEEMSQA--NAEYMQAVNRAKNLHAQICDVLRN 113
                 56688999998888888888888878888888444777777777654..479***************999875 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   3.9e-05      0.14      16      92 ..      46     123 ..      41     126 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
     DUF2203  16 kelleelralrkeleeleeeleeakaeaekse.aaeleaeleeleaeieelveeieelGvevkdleaglvDFpakldg 92 
                 kel+++l+ ++k++e l ++l e   e+++ e  ++le+e+++++ae+ ++v++ ++l +++ d+   ++D p  l++
  CDO71723.1  46 KELVTDLIVKAKQVEYLIQSLPEPDPEEKQVErLQALEEEMSQANAEYMQAVNRAKNLHAQICDVLRNMLDDPDILQD 123
                 6789999999999*****9999988887776679999***************************99999987776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1607  (0.0896313); expected 358.6 (0.02)
Passed bias filter:                     1019  (0.0568353); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 940.00
//
Query:       CDO71724.1  [L=317]
Description: hypothetical protein BN946_scf184920.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-76  256.5   0.2      3e-76  256.2   0.2    1.0  1  Rtf2            Rtf2 RING-finger
     0.0017   18.5   0.0     0.0043   17.2   0.0    1.7  1  zf-NOSIP        Zinc-finger of nitric oxide synthase-interact
     0.0026   17.5   0.1      0.043   13.6   0.0    2.5  2  zf-Nse          Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.086   12.6   0.0       0.22   11.3   0.0    1.6  1  Thrombin_light  Thrombin light chain
      0.094   11.9   0.0       0.14   11.3   0.0    1.2  1  RsmJ            Ribosomal RNA large subunit methyltransferase
        0.4   10.3   4.8      0.072   12.8   1.3    1.4  2  MRP-S31         Mitochondrial 28S ribosomal protein S31


Domain annotation for each model (and alignments):
>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.2   0.2     1e-79     3e-76       1     255 [.       1     295 [.       1     302 [. 0.90

  Alignments for each domain:
  == domain 1  score: 256.2 bits;  conditional E-value: 1e-79
        Rtf2   1 mGnDGGsipkRdelvkekkkkekvdkeeekearwklCaLsqepLkkPivadrlGkLYnkdavleaLldkskekslskaashikglkdvvelkltknpaf 99 
                 mGnDGGsip+R++lv++k k+e++dk+++  a w++CaLs+ pL++P+v++ lGkLYnkda+le+Ll++++ ++ ++ + hi++lkdv++lklt+npa+
  CDO71724.1   1 MGNDGGSIPDRRDLVRTKGKAEQADKANQLRAMWFFCALSKRPLQEPVVSCPLGKLYNKDAILEFLLNRNSFGDGEEICGHIRSLKDVKTLKLTPNPAK 99 
                 9********************************************************************999*************************** PP

        Rtf2 100 eeskk.datkdtkeapfiCpltglemngktkfvalrkCGcVfsekalkevksev...................................ClvCgkeyke 162
                 +  ++  +++   +apf+Cpl  +emng + fv+l +CGcVfs+++lk++ ++                                    C++Cg++y+ 
  CDO71724.1 100 TPPSAnGTESSPDRAPFVCPLNFKEMNGSQPFVYLSTCGCVFSQAGLKALSTSPskspgaeilgepkqdekqkeksstpekeqgkeldlCPQCGAKYDR 198
                 *9999445566789************************************96666789***************************************97 PP

        Rtf2 163 e.dviplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseasesskagkkkekkkekkk...rslaekneksevykslf 255
                 + dv++lnp  e +e+++a++ +++a++ +k k kk+k+a+a++++  +  a+k++s+  ++++ + ++++++ +++   +++++k ++s+++ksl+
  CDO71724.1 199 SsDVVMLNPPPELEEQMRAAMLARRAAEPAKGKGKKRKAAAASEAAWAEPPAKKKASSPMPTTNPSIAAASRAVAQSlavEEAKRKATMSDAVKSLY 295
                 66**************************************999999888888888877776666666666655555411144455667788888886 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.4e-06    0.0043      43      73 ..      37      68 ..      29      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.4e-06
    zf-NOSIP 43 cslslqacrdpvlt.edgylyekeaileyilh 73
                c+ls ++ ++pv++ + g ly+k+aile++l 
  CDO71724.1 37 CALSKRPLQEPVVScPLGKLYNKDAILEFLLN 68
                9***********96489************996 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.4e-05     0.043      14      47 ..      37      70 ..      31      90 .. 0.90
   2 ?    1.0   0.1      0.12   3.7e+02       9      38 ..     113     145 ..     108     195 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                -TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS CS
      zf-Nse 14 CPltlqpfeePvtskkCpHvFEreaIlelikrkk 47
                C l+++p++ePv s      ++++aIle++ +++
  CDO71724.1 37 CALSKRPLQEPVVSCPLGKLYNKDAILEFLLNRN 70
                9*************9999***********95554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.12
                 BXXSB-TTTSSB-S..SEEE.ESSS--EEEHHH CS
      zf-Nse   9 rislkCPltlqpfe..ePvt.skkCpHvFErea 38 
                 r+++ CPl +++++  +P     +C  vF +  
  CDO71724.1 113 RAPFVCPLNFKEMNgsQPFVyLSTCGCVFSQAG 145
                 667789998888853356431346666666555 PP

>> Thrombin_light  Thrombin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.3e-05      0.22       8      23 ..      66      81 ..      62      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.3e-05
                    TSTHHHHSSSGTTTT- CS
  Thrombin_light  8 FFnpktFGeGEadCGl 23
                    + n ++FG+GE+ CG 
      CDO71724.1 66 LLNRNSFGDGEEICGH 81
                    5699***********4 PP

>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.8e-05      0.14     191     225 ..     185     219 ..     170     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.8e-05
                 EEESS---SSSS--EEEEEEES--TTHHHHHHHHH CS
        RsmJ 191 elevrPdsderklngsgmvvinpPwtledelkevl 225
                 el + P+  ++   +s +v++npP++le+++++++
  CDO71724.1 185 ELDLCPQCGAKYDRSSDVVMLNPPPELEEQMRAAM 219
                 888999999999999****************9874 PP

>> MRP-S31  Mitochondrial 28S ribosomal protein S31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.9   5.7e+03      94     100 ..     169     175 ..     155     191 .. 0.47
   2 ?   12.8   1.3   2.4e-05     0.072      26      97 ..     227     301 ..     205     312 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
     MRP-S31  94 eeekeaq 100
                 e++ke++
  CDO71724.1 169 EKQKEKS 175
                 1111111 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.4e-05
     MRP-S31  26 lqkkkkekkkkkekkkselqkatedaekekkkesleeelvaAasavassLp...sdkkkteseLlakLrkheeek 97 
                  +k k +k+k  ++++    +  ++++++++  + +++++aA +ava+sL     ++k t s+ ++ L + ++ +
  CDO71724.1 227 PAKGKGKKRKAAAASEAAWAEPPAKKKASSPMPTTNPSIAAASRAVAQSLAveeAKRKATMSDAVKSLYGPKDGS 301
                 23333333333333344444455555566677889***************7554566778888888887744433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2070.85
//
Query:       CDO71725.1  [L=380]
Description: hypothetical protein BN946_scf184920.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00041   20.4   0.1     0.0011   19.0   0.1    1.8  1  HNH_2     HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   6.4e-08    0.0011       1      67 [.     164     264 ..     164     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.4e-08
       HNH_2   1 Cvitgiddp................s.lleaAHIiPwslssffnd........l..........ilnrfeigrillekgstidspsNgllLspdiHklF 64 
                 Cv+tgi d                 + ++ +AHIi  s+++   d        +          i++ +  +    ++++++++p+N+++ + + H++F
  CDO71725.1 164 CVFTGIIDAqsylaniaadvdpgtmAlATNVAHIISQSIAENI-DgvppaqqaKfqwartagamIERFGGFNAHEVLGHDNLHNPKNAFTATQTPHMYF 261
                 9****544458888999999999986688*******6666422.245544443034444667774444444677889********************** PP

       HNH_2  65 dqf 67 
                 d+ 
  CDO71725.1 262 DSL 264
                 *85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2559.04
//
Query:       CDO71726.1  [L=456]
Description: hypothetical protein BN946_scf184920.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-11   42.1  27.4    2.3e-10   39.9  27.2    1.8  2  MFS_1            Major Facilitator Superfamily
    1.1e-05   25.2   2.0    3.6e-05   23.5   2.0    1.8  1  UNC-93           Ion channel regulatory protein UNC-93
  ------ inclusion threshold ------
       0.15   12.0   0.0        0.3   11.0   0.0    1.4  1  gag_pre-integrs  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.061   3.7e+02     190     225 ..      37      67 ..       5      87 .. 0.59
   2 !   39.9  27.2   3.9e-14   2.3e-10      70     325 ..      97     365 ..      91     388 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.061
       MFS_1 190 gtgpaplvpawkallkdpvlwillialllfffgfsg 225
                 + ++ + + ++k l  +pv+     +++l+f++f+g
  CDO71726.1  37 RGVHPQYR-GFKRLYYNPVV----QVWFLGFVCFMG 67 
                 33334444.59999999955....444444444443 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 3.9e-14
       MFS_1  70 llfalglllllfa....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsll 163
                 ++fa++++++  a    +++  +++++ ++ G++ag+l++a ++l+ ++ +++++g+ ig++ + f+lG ++g++++     ++  +  f++l+++++l
  CDO71726.1  97 ATFAVAAFFAG-AynihPNVGaFVIASGAVLGICAGLLWTAQGSLMLAYPTEDQKGKFIGIFWSIFNLGGVVGAAVSLG--NNFHNTIGFLVLTGIGVL 192
                 45566633333.1335699**99**************************************************999665..557777778888888888 PP

       MFS_1 164 afvlfllllpeepperkrkspkeeekgtgpaplvp....awkallkdpvlwillialllfffgfsglltllpl.ylqevlgls...glllaglllalla 254
                   +l  +  p++  ++  ++ ++      + ++++    +w  l++dp    +++ l+ +ff+ + ++t+ ++ y    +  +      l+ l++ l++
  CDO71726.1 193 IPML--MADPRKMIRSDGSRVITP----RHPSWRTefygLWYTLRTDP----WIVLLFPMFFASNWFYTWQFSdYNGALF--TiraR-ALNNLVYWLSQ 278
                 8554..666666666666666666....77777779999*********....8888888887777777777775433333..14442.4555569**** PP

       MFS_1 255 lvgailallagrlsdr..lgrrrrlllallllllaalglallavt..................ssavllllvlvliGfglgfvfpsllala 325
                 +vg   ++ +g+l+d   l+rr+r + + ++l+++++ + ++a++                   ++v  l++++++G+  ++ ++++ ++ 
  CDO71726.1 279 IVG---SVSIGFLLDQrgLSRRFRAFSGWIVLFVMVFVVHIWAFFyqrdytratvsdkidiraRTYVSRLWLYIFCGLLDAMWQTTA-YWF 365
                 ***...889*****77699999999999999999999999999999****************9999999999999999999865554.333 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   2.0     6e-09   3.6e-05      75     142 ..     100     169 ..      83     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6e-09
      UNC-93  75 llyaifqlgF.lllnk.yylyissallGvgaallwtgqGsyLsenstretiernssilwallksslliGg 142
                 ++ a+f  ++ + +n  +++ +s a+lG+ a llwt+qGs + +  t+++ ++  +i+w++++   ++G+
  CDO71726.1 100 AVAAFFAGAYnIHPNVgAFVIASGAVLGICAGLLWTAQGSLMLAYPTEDQKGKFIGIFWSIFNLGGVVGA 169
                 444444444435566525667788*************************************998877776 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.1e-05       0.3      10      43 ..      17      50 ..      11      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.1e-05
  gag_pre-integrs 10 nanssvslsknkssinlWHrRLGHpsfsrlkkLf 43
                      +++s+s s+++s + + H+R  Hp ++  k+L 
       CDO71726.1 17 ATHASTSGSNADSGSAVVHSRGVHPQYRGFKRLY 50
                     567899999**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2093  (0.116738); expected 358.6 (0.02)
Passed bias filter:                      792  (0.0441742); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3141.51
//
Query:       CDO71727.1  [L=212]
Description: hypothetical protein BN946_scf184920.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-28   97.5   5.2    4.9e-28   96.9   5.2    1.3  1  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   5.2   2.7e-32   4.9e-28       1      77 []     102     179 ..     102     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 2.7e-32
  TB2_DP1_HVA22   1 PayaslkaleskeksdetkwltYWvvfafltvvesla.dvllswiPfYylfKllfllwlvlpqtqgatyvYekflrpl 77 
                    Pay s+kales+ ++d+ +wltYW+vf+f++++es+a  ++l+++P+Y++fK++f+lwl+lpq++ga+++Y +++rp+
     CDO71727.1 102 PAYLSVKALESPGHADDVQWLTYWIVFGFFNFLESFAlRIVLYYFPWYFAFKSIFILWLQLPQFRGAQLLYGTVVRPV 179
                    9***********999899**********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1434.75
//
Query:       CDO71728.1  [L=82]
Description: hypothetical protein BN946_scf184920.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-21   74.4  10.0    7.4e-21   74.2  10.0    1.1  1  Ost5      Oligosaccharyltransferase subunit 5


Domain annotation for each model (and alignments):
>> Ost5  Oligosaccharyltransferase subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2  10.0   4.1e-25   7.4e-21       1      73 []      15      82 .]      15      82 .] 0.98

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 4.1e-25
        Ost5  1 spfsppvppslqptlafvllligllltalfflyevtstkkkrs.lvkelllalvASlflGfGvvflllavGVYV 73
                ++f p+vp++l+p+laf+ll+++++l+++f      st+++++ +++el++a +ASl+ GfGvv++++++GVYV
  CDO71728.1 15 PAFAPLVPLALLPYLAFLLLAATFALAFYF------STLPTDKfPLRELAVASTASLLGGFGVVAMFCTAGVYV 82
                58****************************......99999999*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 600.80
//
Query:       CDO71729.1  [L=126]
Description: hypothetical protein BN946_scf184920.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-17   62.4   9.8    2.8e-17   62.3   1.6    3.0  3  TFIIS_C          Transcription factor S-II (TFIIS)
    2.1e-08   33.9   5.5      1e-06   28.5   0.3    3.1  2  RNA_POL_M_15KD   RNA polymerases M/15 Kd subunit
    3.8e-05   23.8   2.5      0.058   13.6   0.0    2.3  2  IBR              IBR domain, a half RING-finger domain
    5.6e-05   23.1   7.8     0.0021   18.1   0.2    2.7  2  DZR              Double zinc ribbon
    0.00067   19.0  10.8       0.88    9.1   0.2    4.1  4  zf-ribbon_3      zinc-ribbon domain
     0.0007   19.2   8.8     0.0043   16.7   2.8    2.8  2  zf-NADH-PPase    NADH pyrophosphatase zinc ribbon domain
     0.0021   17.7   0.8     0.0021   17.7   0.8    2.5  2  Baculo_LEF5_C    Baculoviridae late expression factor 5 C-ter
     0.0025   17.8   7.1      0.022   14.8   0.5    2.9  3  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
      0.004   17.2   9.4       0.81    9.8   0.6    3.5  3  UPF0547          Uncharacterised protein family UPF0547
     0.0043   17.2   6.6        1.8    8.8   0.0    3.7  3  zf-RING_7        C4-type zinc ribbon domain
     0.0079   15.6   4.2       0.42   10.1   0.0    2.9  3  Mu-like_Com      Mu-like prophage protein Com
     0.0094   15.4   3.2     0.0094   15.4   3.2    3.3  2  TF_Zn_Ribbon     TFIIB zinc-binding
  ------ inclusion threshold ------
       0.02   14.9   0.2      0.024   14.7   0.2    1.1  1  DUF523           Protein of unknown function (DUF523)
      0.026   14.4   3.1      0.026   14.4   3.1    3.2  2  Nudix_N_2        Nudix N-terminal
       0.03   14.2   6.1       0.99    9.4   0.1    2.6  2  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
      0.039   13.6  10.1        6.7    6.4   0.0    4.0  4  zf_UBZ           Ubiquitin-Binding Zinc Finger
       0.04   13.6  13.6        1.4    8.8   0.1    3.8  4  zinc_ribbon_2    zinc-ribbon domain
      0.042   13.7   8.1       0.47   10.4   0.5    2.8  3  PHD              PHD-finger
      0.051   13.4   3.3        5.5    6.9   0.3    3.3  3  zf-FPG_IleRS     Zinc finger found in FPG and IleRS
      0.076   13.3   0.8      0.076   13.3   0.8    2.6  3  DUF3268          zinc-finger-containing domain
       0.08   12.7  12.3          2    8.2   0.1    4.0  4  Rubredoxin_2     Rubredoxin metal binding domain
      0.083   13.1   7.4        3.6    7.8   1.0    2.8  3  DUF2387          Probable metal-binding protein (DUF2387)
      0.087   12.9   4.9        3.1    7.9   0.4    2.6  2  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma
      0.095   13.1   7.5        1.7    9.1   0.8    2.8  2  Lar_restr_allev  Restriction alleviation protein Lar
      0.096   12.7   6.9       0.44   10.6   0.3    2.3  2  HypA             Hydrogenase/urease nickel incorporation, met
        0.1   12.8  13.3        2.4    8.4   0.1    4.0  4  Zn-ribbon_8      Zinc ribbon domain
       0.16   11.6   3.9        5.2    6.8   0.0    3.0  3  zf-tcix          Putative treble-clef, zinc-finger, Zn-bindin
       0.22   11.3   7.6        7.5    6.3   1.2    3.5  3  DNA_RNApol_7kD   DNA directed RNA polymerase, 7 kDa subunit
       0.22   11.8   5.7         22    5.4   0.0    3.7  4  zinc_ribbon_9    zinc-ribbon
        0.3   11.0   3.3         23    5.0   0.1    3.3  3  Zn_ribbon_SprT   SprT-like zinc ribbon domain
       0.34    9.4   4.6        2.9    6.3   0.9    2.3  2  Terminase_GpA    Phage terminase large subunit (GpA)
       0.39   11.3   5.4         17    6.0   0.1    3.3  3  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
       0.52   10.4  10.0         10    6.2   1.7    3.5  3  CpXC             CpXC protein
       0.64   10.0   6.5        1.6    8.8   0.5    3.1  3  Ogr_Delta        Ogr/Delta-like zinc finger
       0.79    9.7   0.1       0.79    9.7   0.1    2.7  3  DUF3797          Domain of unknown function (DUF3797)
       0.88    9.5  10.3        5.8    6.9   1.0    3.9  3  zinc_ribbon_4    zinc-ribbon domain
       0.98    9.7   6.5         14    6.0   0.1    3.4  3  Methyltransf_13  Putative zinc binding domain
          1    9.2  13.2        1.6    8.6   0.1    3.8  4  A2L_zn_ribbon    A2L zinc ribbon domain
        2.1    8.4  12.9         13    5.9   0.0    3.6  3  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
        2.1    8.6   6.9        3.9    7.7   0.5    3.2  3  Auto_anti-p27    Sjogren's syndrome/scleroderma autoantigen 1
        2.5    8.3  11.9        1.6    9.0   0.1    3.3  3  zinc_ribbon_13   Nucleic-acid-binding protein containing Zn-r
        3.3    7.7   8.0         19    5.3   0.1    3.7  4  DUF35_N          Rubredoxin-like zinc ribbon domain (DUF35_N)
        4.5    7.6   7.6         88    3.5   7.6    2.7  1  Rpr2             RNAse P Rpr2/Rpp21/SNM1 subunit domain
        5.9    6.7  10.3         18    5.2   2.2    3.3  4  Ribosomal_S27e   Ribosomal protein S27
        7.7    6.2   9.3        3.4    7.3   1.6    3.2  4  XAF1_C           XIAP-associated factor 1 C-terminal domain
        9.5    6.7  16.1        4.3    7.8   0.2    3.6  3  zf-IS66          zinc-finger binding domain of transposase IS


Domain annotation for each model (and alignments):
>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1       1.2   4.6e+02       3       7 ..      14      18 ..      12      20 .. 0.78
   2 ?    3.4   0.2      0.18        71      30      36 ..      32      38 ..      30      41 .. 0.67
   3 !   62.3   1.6   7.1e-20   2.8e-17       2      39 .]      86     123 ..      85     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.2
     TFIIS_C  3 CpkCg 7 
                Cp Cg
  CDO71729.1 14 CPDCG 18
                99997 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.18
     TFIIS_C 30 kCtkCgh 36
                +C +Cgh
  CDO71729.1 32 VCEQCGH 38
                6677766 PP

  == domain 3  score: 62.3 bits;  conditional E-value: 7.1e-20
     TFIIS_C   2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 kCp+Cg+ eay  ++Q+RsaDE++t+fy+C+kC++ Wr
  CDO71729.1  86 KCPECGHMEAYSKEAQLRSADEGSTIFYTCVKCKFGWR 123
                 8************************************8 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.3   2.6e-09     1e-06       3      35 ..      13      44 ..      11      45 .. 0.79
   2 ?    5.3   0.8     0.047        18       4      18 ..      87     102 ..      87     120 .. 0.50

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.6e-09
                    BESTTTSBEEEEECSCCCEEEESSSS-EEESSC CS
  RNA_POL_M_15KD  3 FCpkCgNlLlpkedkegknfeCrqCgYeepadq 35
                    FCp+Cg lL  ++d e   + C qCg +epa++
      CDO71729.1 13 FCPDCGTLLSLPQDGEFE-VVCEQCGHVEPASS 44
                    *********655555543.45**********97 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.047
                     ESTTTSB.EEEEECSC CS
  RNA_POL_M_15KD   4 CpkCgNl.Llpkedke 18 
                     Cp+Cg +  ++ke+++
      CDO71729.1  87 CPECGHMeAYSKEAQL 102
                     9999977334444443 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00015     0.058      16      46 ..       9      38 ..       2      39 .. 0.83
   2 !    9.9   0.6    0.0022      0.86      16      46 ..      78     120 ..      63     125 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00015
         IBR 16 pnlkwCprpdCeaiiekseg.cksvtCskCgf 46
                 +l  Cp  dC+++++  ++ + +v C++Cg+
  CDO71729.1  9 GSLLFCP--DCGTLLSLPQDgEFEVVCEQCGH 38
                55789**..******99999777799****98 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0022
         IBR  16 pn....lkwCprpdCeaii..ekseg.cks........vtCskCgf 46 
                 ++    + +Cp  +C+++   +k+++   s         tC kC+f
  CDO71729.1  78 EDllkvTEKCP--ECGHMEaySKEAQlR-SadegstifYTCVKCKF 120
                 335555789**..9*9655224444431.24566677777888886 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   5.3e-06    0.0021      14      38 ..      13      40 ..       8      47 .. 0.85
   2 ?    7.0   2.2     0.015       5.9      14      35 ..      86     119 ..      77     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.3e-06
         DZR 14 fCseCgtklkavaa...edrCpsCgekv 38
                fC++Cgt l+ +++   e +C +Cg+  
  CDO71729.1 13 FCPDCGTLLSLPQDgefEVVCEQCGHVE 40
                9********9666699*********874 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.015
         DZR  14 fCseCgtk..lkavaa.............edrCpsCg 35 
                  C+eCg+       ++              ++C++C+
  CDO71729.1  86 KCPECGHMeaY---SKeaqlrsadegstiFYTCVKCK 119
                 69999988432...33355788888999999999997 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0038       1.5      18      25 ..      13      20 ..      11      22 .. 0.71
   2 ?    5.8   0.1     0.023       9.1       2      11 ..      30      39 ..      29      44 .. 0.78
   3 !    9.1   0.2    0.0023      0.88       2      10 ..      84      92 ..      83      95 .. 0.82
   4 ?    0.6   0.2       1.1   4.1e+02       3       9 ..     113     119 ..     111     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0038
  zf-ribbon_3 18 vCpyCGtk 25
                 +Cp CGt 
   CDO71729.1 13 FCPDCGTL 20
                 67777775 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.023
  zf-ribbon_3  2 tvrCPnCGap 11
                 +v C +CG++
   CDO71729.1 30 EVVCEQCGHV 39
                 6889999997 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0023
  zf-ribbon_3  2 tvrCPnCGa 10
                 t +CP+CG+
   CDO71729.1 84 TEKCPECGH 92
                 678999998 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 1.1
  zf-ribbon_3   3 vrCPnCG 9  
                  ++C +C+
   CDO71729.1 113 YTCVKCK 119
                  6899996 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.8   1.1e-05    0.0043       5      30 ..      13      39 ..      11      40 .. 0.85
   2 ?    4.9   0.4     0.053        21      24      30 ..      87      93 ..      86      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-05
  zf-NADH-PPase  5 FCgrCGapte.paeggwarvCpaCgle 30
                   FC+ CG+    p++g++  vC++Cg+ 
     CDO71729.1 13 FCPDCGTLLSlPQDGEFEVVCEQCGHV 39
                   *******98625666**********96 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.053
  zf-NADH-PPase 24 CpaCgle 30
                   Cp Cg++
     CDO71729.1 87 CPECGHM 93
                   9999996 PP

>> Baculo_LEF5_C  Baculoviridae late expression factor 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.9       3.9   1.5e+03      38      41 ..      34      37 ..      30      57 .. 0.59
   2 !   17.7   0.8   5.4e-06    0.0021      13      40 ..      90     118 ..      86     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.9
  Baculo_LEF5_C 38 skCg 41
                    +Cg
     CDO71729.1 34 EQCG 37
                   4444 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 5.4e-06
  Baculo_LEF5_C  13 ClHdfv.tiEiQnRagDEivsfvryCskC 40 
                    C H      E Q+R+ DE   +  +C+kC
     CDO71729.1  90 CGHMEAySKEAQLRSADEGSTIFYTCVKC 118
                    555444467******************** PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.3     0.079        31      20      45 ..      13      38 ..       3      39 .. 0.65
   2 ?    2.1   0.2       0.5     2e+02      19      29 ..      31      41 ..      24      49 .. 0.75
   3 !   14.8   0.5   5.5e-05     0.022      20      44 ..      86     119 ..      80     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.079
  Zn_Tnp_IS1595 20 vCPhCgsrkayrikt..rglfqCkeCrk 45
                    CP Cg  ++ ++ +   +   C+ C++
     CDO71729.1 13 FCPDCG--TLLSLPQdgEFEVVCEQCGH 38
                   4*****..55555552255555888876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.5
  Zn_Tnp_IS1595 19 fvCPhCgsrka 29
                   +vC  Cg+ ++
     CDO71729.1 31 VVCEQCGHVEP 41
                   78999998744 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 5.5e-05
  Zn_Tnp_IS1595  20 vCPhCgsrkayrikt.........rglfqCkeCr 44 
                     CP Cg+++ay+ ++            + C +C+
     CDO71729.1  86 KCPECGHMEAYSKEAqlrsadegsTIFYTCVKCK 119
                    6***********9999999**999999******8 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0084       3.3      16      22 ..      13      19 ..      10      20 .. 0.87
   2 ?    3.6   0.6      0.19        74      16      23 ..      32      39 ..      31      39 .. 0.86
   3 !    9.8   0.6    0.0021      0.81      15      22 ..      85      92 ..      84      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0084
     UPF0547 16 fCphCGy 22
                fCp+CG+
  CDO71729.1 13 FCPDCGT 19
                9*****8 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.19
     UPF0547 16 fCphCGyv 23
                +C  CG+v
  CDO71729.1 32 VCEQCGHV 39
                7999***7 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0021
     UPF0547 15 qfCphCGy 22
                ++Cp+CG+
  CDO71729.1 85 EKCPECGH 92
                68999999 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0047       1.8      21      33 .]       9      21 ..       3      21 .. 0.77
   2 ?    3.4   0.5      0.22        87      24      30 ..      31      37 ..      25      37 .. 0.84
   3 ?    6.7   0.0     0.021       8.3      23      30 ..      84      91 ..      61      92 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0047
                TB-EE-TTT--EE CS
   zf-RING_7 21 devvtCpeCGRIL 33
                + + +Cp CG +L
  CDO71729.1  9 GSLLFCPDCGTLL 21
                5689******876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.22
                EE-TTT- CS
   zf-RING_7 24 vtCpeCG 30
                v C++CG
  CDO71729.1 31 VVCEQCG 37
                78****9 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.021
                -EE-TTT- CS
   zf-RING_7 23 vvtCpeCG 30
                  +CpeCG
  CDO71729.1 84 TEKCPECG 91
                489****9 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.026        10      27      33 ..      14      20 ..      10      28 .. 0.87
   2 ?   -0.5   0.1       2.2   8.8e+02      23      32 ..      29      38 ..      24      44 .. 0.74
   3 !   10.1   0.0    0.0011      0.42      20      46 ..      80     102 ..      71     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.026
  Mu-like_Com 27 CPRCGtL 33
                 CP CGtL
   CDO71729.1 14 CPDCGTL 20
                 ******9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
  Mu-like_Com 23 ltiKCPRCGt 32
                  ++ C  CG 
   CDO71729.1 29 FEVVCEQCGH 38
                 5667888884 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0011
  Mu-like_Com  20 lDeltiKCPRCGtLnHlkaesldaegr 46 
                  l ++t KCP CG   H+ a s +a+  
   CDO71729.1  80 LLKVTEKCPECG---HMEAYSKEAQ-L 102
                  445889******...8888888877.4 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.2   2.4e-05    0.0094       2      33 ..      13      44 ..      12      49 .. 0.80
   2 ?    3.3   5.1      0.15        59       2      10 ..      86      94 ..      85     118 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-05
                  EETTTTCEECHEETSTTCE..EESSSSBEEEECC CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergel..vCtdCGlVledns 33
                   CP+Cg+  l+  p  ge+  vC+ CG V    s
    CDO71729.1 13 FCPDCGT--LLSLPQDGEFevVCEQCGHVEPASS 44
                  6*****8..566688888888********87665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
                  EETTTTCEE CS
  TF_Zn_Ribbon  2 kCPnCgstn 10
                  kCP+Cg+ +
    CDO71729.1 86 KCPECGHME 94
                  89***9855 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   6.3e-05     0.024      37     125 ..      11     116 ..       2     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.3e-05
      DUF523  37 vpvCPEvaggLptPRe.pael...............akrvlkkegedvtealekgaeealeelkeeeikgailkekSPSCGvekiYdgtfskkl.vege 118
                 + +CP +   L+ P + + e+               +++++++++ d   +  +  +++  ++++++ ++  ++ek P CG  ++Y+ + + ++  eg+
  CDO71729.1  11 LLFCPDCGTLLSLPQDgEFEVvceqcghvepassyeNIEIVTRSEPDAFPSALRQKRKTQTKVHAANEDLLKVTEKCPECGHMEAYSKEAQLRSaDEGS 109
                 5689999999999997345668899999999999987779999999999988888999999999999999999*************7555544446777 PP

      DUF523 119 Gvfaall 125
                  +f   +
  CDO71729.1 110 TIFYTCV 116
                 7776655 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.1   6.7e-05     0.026       2      31 ..      13      39 ..      12      40 .. 0.82
   2 ?    2.8   2.1       0.3   1.2e+02       3       9 ..      87      93 ..      86     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.7e-05
                B-TTT--B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  2 FCsqCGtpvelripdgDnreRlvCpaCgti 31
                FC+ CGt ++  +p++++ e  vC++Cg++
  CDO71729.1 13 FCPDCGTLLS--LPQDGEFE-VVCEQCGHV 39
                9******965..66666666.9*******9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.3
                -TTT--B CS
   Nudix_N_2  3 CsqCGtp 9 
                C++CG+ 
  CDO71729.1 87 CPECGHM 93
                8888874 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0025      0.99      31      55 ..      14      39 ..       5      43 .. 0.89
   2 ?    6.0   2.2     0.028        11      29      54 ..      85     120 ..      65     123 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0025
  OrfB_Zn_ribbon 31 CseCgsknke.alsgrtfkCpnCgfe 55
                    C+ Cg  ++  ++ + +++C++Cg++
      CDO71729.1 14 CPDCGTLLSLpQDGEFEVVCEQCGHV 39
                    *********9777778999*****97 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.028
  OrfB_Zn_ribbon  29 ktCseCgsknke..........alsgrtfkCpnCgf 54 
                      +C+eCg+   +          + s+  ++C +C+f
      CDO71729.1  85 EKCPECGHMEAYskeaqlrsadEGSTIFYTCVKCKF 120
                     58******9888666666653333334466777766 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.017       6.7       3      15 ..      12      24 ..      10      28 .. 0.79
   2 ?    5.7   0.1     0.029        11       3      11 ..      31      39 ..      30      46 .. 0.79
   3 ?    5.2   0.1      0.04        16       3      11 ..      85      93 ..      83      96 .. 0.85
   4 ?    0.2   0.6       1.5   5.8e+02       3       9 ..     113     119 ..     112     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.017
      zf_UBZ  3 ylCerCgkeipes 15
                 +C++Cg+ ++ +
  CDO71729.1 12 LFCPDCGTLLSLP 24
                58*****988766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.029
      zf_UBZ  3 ylCerCgke 11
                ++Ce+Cg+ 
  CDO71729.1 31 VVCEQCGHV 39
                69*****97 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.04
      zf_UBZ  3 ylCerCgke 11
                  C++Cg++
  CDO71729.1 85 EKCPECGHM 93
                68*****85 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.5
      zf_UBZ   3 ylCerCg 9  
                 y+C +C+
  CDO71729.1 113 YTCVKCK 119
                 9*****7 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0035       1.4       1       7 [.      13      19 ..      13      22 .. 0.58
   2 ?    5.7   0.1     0.031        12      14      21 ..      31      38 ..      28      39 .. 0.79
   3 ?    7.3   0.3      0.01         4       1       7 [.      86      92 ..      83      93 .. 0.70
   4 ?   -2.2   0.6       9.7   3.8e+03       2       5 ..     115     118 ..     113     120 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0035
  zinc_ribbon_2  1 fCpnCGa 7 
                   fCp CG+
     CDO71729.1 13 FCPDCGT 19
                   5666665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.031
  zinc_ribbon_2 14 kFCpyCGt 21
                   + C++CG+
     CDO71729.1 31 VVCEQCGH 38
                   56999998 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.01
  zinc_ribbon_2  1 fCpnCGa 7 
                   +Cp+CG+
     CDO71729.1 86 KCPECGH 92
                   5666664 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 9.7
  zinc_ribbon_2   2 CpnC 5  
                    C +C
     CDO71729.1 115 CVKC 118
                    6666 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.49   1.9e+02      12      23 ..       8      19 ..       4      22 .. 0.77
   2 ?    5.3   2.2     0.047        18       1      23 [.      13      38 ..      13      40 .. 0.80
   3 ?   10.4   0.5    0.0012      0.47      19      51 ..      85     120 ..      70     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.49
                TSCEEEETTTSC CS
         PHD 12 eeelvqCdgCkr 23
                 + l++C +C++
  CDO71729.1  8 IGSLLFCPDCGT 19
                577899999976 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.047
                SBTTTTS...TTSTTSCEEEETTTSC CS
         PHD  1 rCavCkk...ksdeeeelvqCdgCkr 23
                +C  C+      +++e+ v+C++C++
  CDO71729.1 13 FCPDCGTllsLPQDGEFEVVCEQCGH 38
                588888888666779999******87 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0012
                 TTTSCEEETTTSSSTHSHHSHHSS...TBSSTTTHT CS
         PHD  19 dgCkrwfHqkClkppleseekpeg...ewlCekCke 51 
                 ++C ++ H++ ++ + + ++ +eg    ++C kCk 
  CDO71729.1  85 EKCPECGHMEAYSKEAQLRSADEGstiFYTCVKCKF 120
                 79**********9999988888888999******85 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.64   2.5e+02       4       8 ..      14      18 ..      10      24 .. 0.69
   2 ?    3.5   0.0      0.16        64       3      10 ..      32      39 ..      25      41 .. 0.80
   3 ?    6.9   0.3     0.014       5.5       2       9 ..      85      92 ..      85      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.64
                  -TTT- CS
  zf-FPG_IleRS  4 CpRCw 8 
                  Cp C+
    CDO71729.1 14 CPDCG 18
                  55555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.16
                  B-TTT--B CS
  zf-FPG_IleRS  3 pCpRCwry 10
                  +C++C+++
    CDO71729.1 32 VCEQCGHV 39
                  58888885 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.014
                  SB-TTT-- CS
  zf-FPG_IleRS  2 epCpRCwr 9 
                  e+Cp C++
    CDO71729.1 85 EKCPECGH 92
                  8******8 PP

>> DUF3268  zinc-finger-containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       3.5   1.3e+03      28      39 ..      10      20 ..       4      30 .. 0.65
   2 ?   -0.3   0.2       3.3   1.3e+03       4      14 ..      32      42 ..      29      80 .. 0.69
   3 ?   13.3   0.8    0.0002     0.076       2      37 ..      84     119 ..      83     126 .] 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3.5
     DUF3268 28 kllylCpkCday 39
                +ll+ Cp+C++ 
  CDO71729.1 10 SLLF-CPDCGTL 20
                4444.8888765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 3.3
     DUF3268  4 rCpyCGekvil 14
                +C+ CG+    
  CDO71729.1 32 VCEQCGHVEPA 42
                57777765443 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.0002
     DUF3268   2 ttrCpyCGekvilvsaseiYkerskgkllylCpkCd 37 
                 t++Cp CG+  ++ +++++ ++ +  +++y C kC 
  CDO71729.1  84 TEKCPECGHMEAYSKEAQLRSADEGSTIFYTCVKCK 119
                 679*****************9999999********7 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.28   1.1e+02      17      22 ..      14      19 ..      13      23 .. 0.87
   2 ?    7.5   0.3    0.0084       3.3       2      11 ..      32      41 ..      32      43 .. 0.86
   3 ?    8.2   0.1    0.0052         2      16      25 ..      86      95 ..      86      98 .. 0.84
   4 ?    0.3   0.5       1.5     6e+02       1       8 [.     113     120 ..     113     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.28
  Rubredoxin_2 17 CpsCgs 22
                  Cp+Cg+
    CDO71729.1 14 CPDCGT 19
                  999985 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0084
  Rubredoxin_2  2 vCsqCGfesa 11
                  vC+qCG++ +
    CDO71729.1 32 VCEQCGHVEP 41
                  7*****9876 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0052
  Rubredoxin_2 16 rCpsCgsWnt 25
                  +Cp+Cg+++ 
    CDO71729.1 86 KCPECGHMEA 95
                  7*****9986 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.5
  Rubredoxin_2   1 YvCsqCGf 8  
                   Y C +C f
    CDO71729.1 113 YTCVKCKF 120
                   89999965 PP

>> DUF2387  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.7     0.012       4.6      11      56 ..      14      53 ..      12      77 .. 0.68
   2 ?    7.3   0.2     0.013       5.1      19      50 ..      72     104 ..      64     111 .. 0.69
   3 ?    7.8   1.0    0.0093       3.6      11      38 ..      87     120 ..      85     126 .] 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.012
     DUF2387 11 CPrCsemDkirmweedeveyrECvsCgftdelsekgqsvakelktr 56
                CP C +   +    +d++  + C +Cg+++  s+    + +e+ tr
  CDO71729.1 14 CPDCGT---LLSLPQDGEFEVVCEQCGHVEPASSY---ENIEIVTR 53
                777775...5667889998999*******998877...44455444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.013
     DUF2387  19 kirmweedeveyrE.CvsCgftdelsekgqsva 50 
                 k+++ +ed  ++ E C +Cg++++ s++ q  +
  CDO71729.1  72 KVHAANEDLLKVTEkCPECGHMEAYSKEAQLRS 104
                 566666666555555********9998866554 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0093
     DUF2387  11 CPrCsemD......kirmweedeveyrECvsCgf 38 
                 CP C +m       ++r  +e  + +  Cv+C+f
  CDO71729.1  87 CPECGHMEayskeaQLRSADEGSTIFYTCVKCKF 120
                 9999999999987778887777788899999998 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.4    0.0079       3.1       2      14 ..      14      26 ..      13      34 .. 0.77
   2 ?    6.4   0.5     0.023       9.1       1       7 [.      86      92 ..      86      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0079
  DNA_ligase_ZBD  2 CPvCGsavvReeg 14
                    CP CG+ +  +++
      CDO71729.1 14 CPDCGTLLSLPQD 26
                    ******9876654 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.023
  DNA_ligase_ZBD  1 hCPvCGs 7 
                    +CP+CG+
      CDO71729.1 86 KCPECGH 92
                    6*****6 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.0     0.022       8.6       4      42 ..      12      46 ..       2      61 .. 0.66
   2 ?    9.1   0.8    0.0044       1.7       4      35 ..      85     119 ..      82     125 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.022
  Lar_restr_allev  4 kpCPfCggravlersqrvvaeigqcvyCadCga..stpwfk 42
                     + CP Cg    l ++  +       v C++Cg     + ++
       CDO71729.1 12 LFCPDCGTLLSLPQD--GEF----EVVCEQCGHvePASSYE 46
                     557888765555555..444....699****9944333333 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0044
  Lar_restr_allev   4 kpCPfCggravler.sqrvvaeigq..cvyCadCg 35 
                      + CP Cg+ + + + +q+++a+ g   + +C +C+
       CDO71729.1  85 EKCPECGHMEAYSKeAQLRSADEGStiFYTCVKCK 119
                      68*****9666655055555555559955555555 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3    0.0011      0.44      71      95 ..      12      39 ..       5      55 .. 0.80
   2 ?    5.1   1.6     0.057        22      68      82 ..      82      96 ..      56     124 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
                EEETTTS-EEECHHH...HHS-TTTSSS CS
        HypA 71 vrCreCgkefeleek...alrCpkCgsa 95
                + C +Cg+  +l ++   ++ C++Cg+ 
  CDO71729.1 12 LFCPDCGTLLSLPQDgefEVVCEQCGHV 39
                68*********7774447789****985 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.057
                --EEEETTTS-EEEC CS
        HypA 68 pvkvrCreCgkefel 82
                +v+ +C eCg+    
  CDO71729.1 82 KVTEKCPECGHMEAY 96
                344455555543332 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1       0.1        40      29      34 ..      14      19 ..       5      25 .. 0.80
   2 ?    6.8   0.3     0.018       7.1       4      14 ..      29      39 ..      28      50 .. 0.81
   3 ?    8.4   0.1    0.0061       2.4      27      35 ..      84      94 ..      68      98 .. 0.76
   4 ?   -0.9   0.3       4.7   1.8e+03       6      12 ..     113     119 ..     111     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.1
  Zn-ribbon_8 29 CPeCgs 34
                 CP+Cg 
   CDO71729.1 14 CPDCGT 19
                 999996 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.018
  Zn-ribbon_8  4 YeYrCeeCghe 14
                 +e  Ce+Cgh+
   CDO71729.1 29 FEVVCEQCGHV 39
                 57789999964 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0061
  Zn-ribbon_8 27 ta.CPeCgs.e 35
                 t+ CPeCg+ e
   CDO71729.1 84 TEkCPECGHmE 94
                 555****9855 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 4.7
  Zn-ribbon_8   6 YrCeeCg 12 
                  Y C +C+
   CDO71729.1 113 YTCVKCK 119
                  8888886 PP

>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.057        22      13      18 ..      14      19 ..      11      20 .. 0.91
   2 ?   -1.3   0.1       4.5   1.7e+03      13      17 ..      33      37 ..      32      42 .. 0.79
   3 ?    6.8   0.0     0.013       5.2      12      17 ..      86      91 ..      78      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.057
     zf-tcix 13 CpkCGt 18
                Cp CGt
  CDO71729.1 14 CPDCGT 19
                *****9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.5
     zf-tcix 13 CpkCG 17
                C +CG
  CDO71729.1 33 CEQCG 37
                88998 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.013
     zf-tcix 12 kCpkCG 17
                kCp+CG
  CDO71729.1 86 KCPECG 91
                9***** PP

>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.2     0.019       7.5       3      25 ..      14      38 ..      12      39 .. 0.80
   2 ?    5.7   0.0     0.029        11      19      25 ..      86      92 ..      77      98 .. 0.91
   3 ?    1.2   0.1      0.78   3.1e+02       1       7 [.     113     119 ..     113     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.019
                    -SSS--B----SSS..----SSS-- CS
  DNA_RNApol_7kD  3 CgeCgaevslkkgd..piRCkeCGh 25
                    C +Cg+  sl +     + C +CGh
      CDO71729.1 14 CPDCGTLLSLPQDGefEVVCEQCGH 38
                    9999999998775323599*****9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.029
                    --SSS-- CS
  DNA_RNApol_7kD 19 RCkeCGh 25
                    +C eCGh
      CDO71729.1 86 KCPECGH 92
                    7*****9 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.78
                     -B-SSS- CS
  DNA_RNApol_7kD   1 YiCgeCg 7  
                     Y+C +C+
      CDO71729.1 113 YTCVKCK 119
                     8999996 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.24        93      23      28 ..      13      18 ..       5      20 .. 0.80
   2 ?    4.4   1.9      0.12        47       3      28 ..      12      37 ..      10      39 .. 0.78
   3 ?    5.4   0.0     0.057        22      21      28 ..      85      91 ..      70      93 .. 0.64
   4 ?    0.6   0.0       1.8   7.1e+02      20      28 ..     109     119 ..     100     122 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.24
  zinc_ribbon_9 23 lCPhCg 28
                   +CP+Cg
     CDO71729.1 13 FCPDCG 18
                   7****8 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.12
  zinc_ribbon_9  3 yWChqCdrfVsvspdedsdvlCPhCg 28
                   ++C +C   +s+  d + +v+C +Cg
     CDO71729.1 12 LFCPDCGTLLSLPQDGEFEVVCEQCG 37
                   68888888888888888888899997 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.057
  zinc_ribbon_9 21 dvlCPhCg 28
                   ++ CP+Cg
     CDO71729.1 85 EK-CPECG 91
                   35.****8 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 1.8
  zinc_ribbon_9  20 sdv..lCPhCg 28 
                    s +  +C  C+
     CDO71729.1 109 STIfyTCVKCK 119
                    344468****7 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1      0.06        23       7      31 ..      14      37 ..      13      40 .. 0.79
   2 ?    1.4   0.2      0.76     3e+02       6      11 ..      86      91 ..      86      94 .. 0.87
   3 ?    3.4   0.0      0.19        74       5      11 ..     113     119 ..      99     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.06
  Zn_ribbon_SprT  7 CtgCgreythhlsi.rrhn.YrCrrCk 31
                    C++Cg   t  +   + +    C +C+
      CDO71729.1 14 CPDCG---TLLSLPqDGEFeVVCEQCG 37
                    *****...8888887777788888886 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.76
  Zn_ribbon_SprT  6 rCtgCg 11
                    +C+ Cg
      CDO71729.1 86 KCPECG 91
                    6****9 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.19
  Zn_ribbon_SprT   5 YrCtgCg 11 
                     Y+C+ C+
      CDO71729.1 113 YTCVKCK 119
                     8999997 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.026        10     194     218 ..      26      55 ..      18      75 .. 0.77
   2 ?    6.3   0.9    0.0075       2.9     200     236 ..      86     121 ..      75     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.026
  Terminase_GpA 194 qrryyvpCphCgelqels.ferlkw....p 218
                    + +++v C +Cg+  ++s +e++++    +
     CDO71729.1  26 DGEFEVVCEQCGHVEPASsYENIEIvtrsE 55 
                    5689***********988899998854432 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0075
  Terminase_GpA 200 pCphCgelqelsferlkwpegeaeekaryvCphcgsl 236
                    +Cp+Cg++   s e  +  + ++ ++  y+C +c+  
     CDO71729.1  86 KCPECGHMEAYSKEA-QLRSADEGSTIFYTCVKCKFG 121
                    7*********99444.44333389**********865 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.043        17       5      13 ..      11      19 ..       9      23 .. 0.85
   2 ?    1.4   0.1       1.2   4.6e+02       6      13 ..      31      38 ..      31      46 .. 0.92
   3 ?    4.7   0.3      0.11        44       7      32 ..      86     118 ..      80     121 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.043
  Zn_ribbon_recom  5 llrCgeCGs 13
                     ll+C +CG 
       CDO71729.1 11 LLFCPDCGT 19
                     8*******6 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 1.2
  Zn_ribbon_recom  6 lrCgeCGs 13
                     ++C +CG+
       CDO71729.1 31 VVCEQCGH 38
                     69*****8 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.11
  Zn_ribbon_recom   7 rCgeCGspmtr......rkrk.gkrhyYrCsty 32 
                      +C eCG+   +      r++  g+++ Y C ++
       CDO71729.1  86 KCPECGHMEAYskeaqlRSADeGSTIFYTCVKC 118
                      7*****984442233333333677788888775 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.23        90      39      50 ..      13      24 ..       9      27 .. 0.79
   2 ?    4.3   0.2       0.1        40       1      24 [.      31      54 ..      31      58 .. 0.79
   3 ?    6.2   1.7     0.027        10      31      66 ..      76     113 ..      54     120 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.23
        CpXC 39 tCpkCgatakle 50
                 Cp+Cg+  +l+
  CDO71729.1 13 FCPDCGTLLSLP 24
                599999988775 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.1
        CpXC  1 ltCpaCgkefeaeiwtsidadedp 24
                + C +Cg+   a  ++ i++ +++
  CDO71729.1 31 VVCEQCGHVEPASSYENIEIVTRS 54
                569999999999999888877665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.027
        CpXC  31 ldgslfeat..CpkCgatakleapllyhdpekellill 66 
                  +++l+++t  Cp+Cg+  +++ +     +++   i++
  CDO71729.1  76 ANEDLLKVTekCPECGHMEAYSKEAQLRSADEGSTIFY 113
                 55566555444999999988877666666666555555 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.99   3.8e+02       2       7 ..      14      19 ..      13      21 .. 0.90
   2 ?    1.8   0.0      0.62   2.4e+02       2      21 ..      33      52 ..      32      55 .. 0.79
   3 ?    8.8   0.5     0.004       1.6       1      28 [.      86     115 ..      86     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.99
   Ogr_Delta  2 CPhCga 7 
                CP Cg+
  CDO71729.1 14 CPDCGT 19
                ****95 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.62
   Ogr_Delta  2 CPhCgapaaartsrnlskdv 21
                C +Cg+   a++ +n+   +
  CDO71729.1 33 CEQCGHVEPASSYENIEIVT 52
                999**999888888877665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.004
   Ogr_Delta   1 rCPhCgapaaartsrnlskdvre...ryyqC 28 
                 +CP+Cg+ + a ++++ ++   e   ++y C
  CDO71729.1  86 KCPECGH-MEAYSKEAQLRSADEgstIFYTC 115
                 6*****7.77777777777777777777777 PP

>> DUF3797  Domain of unknown function (DUF3797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.79   3.1e+02      15      20 ..      13      18 ..       7      21 .. 0.87
   2 ?   -1.5   0.1         6   2.3e+03      14      21 ..      31      38 ..      20      52 .. 0.76
   3 ?    9.7   0.1     0.002      0.79      15      46 ..      86     120 ..      79     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.79
     DUF3797 15 qCPeCg 20
                 CP+Cg
  CDO71729.1 13 FCPDCG 18
                6****9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6
     DUF3797 14 vqCPeCgN 21
                v C +Cg 
  CDO71729.1 31 VVCEQCGH 38
                67888875 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.002
     DUF3797  15 qCPeCgNnkvlNsegkviiedd.t..fyreCkCgf 46 
                 +CPeCg       e++++  d+ +  fy   kC f
  CDO71729.1  86 KCPECGHMEAYSKEAQLRSADEgStiFYTCVKCKF 120
                 6****************654432345887656644 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.0     0.015       5.8       5      34 ..      14      39 ..      11      39 .. 0.81
   2 ?    4.5   0.2     0.088        34      27      33 ..      86      92 ..      82      93 .. 0.85
   3 ?    1.5   0.2      0.76     3e+02       4      14 ..     114     124 ..     112     126 .] 0.68

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
  zinc_ribbon_4  5 CpsCkakyeiddeklpakgvkvrCskCghv 34
                   Cp C++  +++     ++  +v C  Cghv
     CDO71729.1 14 CPDCGTLLSLPQ----DGEFEVVCEQCGHV 39
                   888888777777....57789999999997 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.088
  zinc_ribbon_4 27 rCskCgh 33
                   +C+ Cgh
     CDO71729.1 86 KCPECGH 92
                   8999999 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.76
  zinc_ribbon_4   4 tCpsCkakyei 14 
                    tC +Ck+  ++
     CDO71729.1 114 TCVKCKFGWRV 124
                    67777776655 PP

>> Methyltransf_13  Putative zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.15        57      41      50 ..      11      20 ..      10      24 .. 0.87
   2 ?    6.0   0.1     0.035        14      42      51 ..      31      40 ..      30      49 .. 0.86
   3 ?    1.4   0.1         1   3.9e+02      43      50 ..      86      93 ..      81     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.15
  Methyltransf_13 41 lvvCedCglv 50
                     l++C+dCg +
       CDO71729.1 11 LLFCPDCGTL 20
                     78*****976 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.035
  Methyltransf_13 42 vvCedCglvQ 51
                     vvCe+Cg+v 
       CDO71729.1 31 VVCEQCGHVE 40
                     79******95 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 1
  Methyltransf_13 43 vCedCglv 50
                      C++Cg++
       CDO71729.1 86 KCPECGHM 93
                     5*****98 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0041       1.6      20      29 ..      10      19 ..       9      20 .. 0.88
   2 ?    4.3   0.2     0.087        34      22      31 ..      31      40 ..      28      42 .. 0.62
   3 ?    4.0   0.1      0.11        42      24      32 ..      87      95 ..      84      96 .. 0.76
   4 ?   -1.5   0.6       5.7   2.2e+03       4      10 ..     113     119 ..     112     120 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0041
  A2L_zn_ribbon 20 gylvCieCga 29
                   + l+C++Cg+
     CDO71729.1 10 SLLFCPDCGT 19
                   689*****96 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.087
  A2L_zn_ribbon 22 lvCieCgasf 31
                    vC  Cg ++
     CDO71729.1 31 VVCEQCGHVE 40
                   4666666665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.11
  A2L_zn_ribbon 24 CieCgasfp 32
                   C+eCg  ++
     CDO71729.1 87 CPECGHMEA 95
                   ****97766 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 5.7
  A2L_zn_ribbon   4 kvCsvCg 10 
                    ++C +C+
     CDO71729.1 113 YTCVKCK 119
                    4566664 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.033        13      17      26 ..       9      18 ..       4      19 .. 0.85
   2 ?    4.5   0.2     0.089        35      21      27 ..      32      38 ..      25      38 .. 0.90
   3 ?    4.7   0.8     0.075        29      22      27 ..      87      92 ..      86      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.033
  PhnA_Zn_Ribbon 17 gallvCpeCa 26
                    g+ll Cp+C+
      CDO71729.1  9 GSLLFCPDCG 18
                    57999****7 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.089
  PhnA_Zn_Ribbon 21 vCpeCah 27
                    vC+ C+h
      CDO71729.1 32 VCEQCGH 38
                    8999998 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.075
  PhnA_Zn_Ribbon 22 CpeCah 27
                    CpeC+h
      CDO71729.1 87 CPECGH 92
                    888887 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.5      0.01       3.9      18      39 ..      14      36 ..       7      37 .. 0.82
   2 ?    2.4   0.2      0.45   1.7e+02      16      22 ..      85      91 ..      83      98 .. 0.84
   3 ?    0.2   0.1       2.2   8.5e+02      35      39 ..     114     118 ..     102     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.01
  Auto_anti-p27 18 CpvCgvPLmrdr.kggkvyCvaC 39
                   Cp+Cg+ L   + ++ +v+C  C
     CDO71729.1 14 CPDCGTLLSLPQdGEFEVVCEQC 36
                   *****998875566778889888 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.45
  Auto_anti-p27 16 etCpvCg 22
                   e Cp+Cg
     CDO71729.1 85 EKCPECG 91
                   6799997 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 2.2
  Auto_anti-p27  35 yCvaC 39 
                     Cv C
     CDO71729.1 114 TCVKC 118
                    69999 PP

>> zinc_ribbon_13  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.032        12      36      45 ..      31      40 ..      24      47 .. 0.86
   2 ?    9.0   0.1    0.0041       1.6      37      52 ..      86     101 ..      77     112 .. 0.82
   3 ?    0.0   0.9       2.5   9.7e+02      37      43 ..     114     120 ..     101     121 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.032
  zinc_ribbon_13 36 vsCknCgYte 45
                    v C++Cg++e
      CDO71729.1 31 VVCEQCGHVE 40
                    88*****998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0041
  zinc_ribbon_13  37 sCknCgYtelYkaets 52 
                      C +Cg++e Y +e++
      CDO71729.1  86 KCPECGHMEAYSKEAQ 101
                     5999999999988764 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 2.5
  zinc_ribbon_13  37 sCknCgY 43 
                     +C +C++
      CDO71729.1 114 TCVKCKF 120
                     5555554 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.048        19      14      20 ..      14      20 ..      12      26 .. 0.82
   2 ?    1.2   0.2      0.91   3.6e+02      14      20 ..      33      39 ..      31      39 .. 0.79
   3 ?    3.4   0.2      0.19        73      13      19 ..      86      92 ..      83      92 .. 0.73
   4 ?   -1.2   0.0       5.1     2e+03       5      17 ..     106     118 ..     104     120 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.048
     DUF35_N 14 CpdCGtv 20
                CpdCGt+
  CDO71729.1 14 CPDCGTL 20
                8888885 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.91
     DUF35_N 14 CpdCGtv 20
                C  CG+v
  CDO71729.1 33 CEQCGHV 39
                8899987 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.19
     DUF35_N 13 rCpdCGt 19
                +Cp CG+
  CDO71729.1 86 KCPECGH 92
                6888875 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 5.1
     DUF35_N   5 aegrLvgqrCpdC 17 
                 +eg  ++  C +C
  CDO71729.1 106 DEGSTIFYTCVKC 118
                 6666677778888 PP

>> Rpr2  RNAse P Rpr2/Rpp21/SNM1 subunit domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.6      0.23        88      47      90 .]      32     119 ..       6     119 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.23
                 B-TTT--B--CTTTEEEEE.............E-SSS-E...............................................EEEEETTTT CS
        Rpr2  47 vCkkCgsvlipgvtcsvrv.............enkskkkkkkkkka......................................dvlvvtClaCg 90 
                 vC++Cg+v  + +  ++++             ++k+k+       +                                       ++ +tC +C+
  CDO71729.1  32 VCEQCGHVEPASSYENIEIvtrsepdafpsalRQKRKT-------QtkvhaanedllkvtekcpecghmeayskeaqlrsadegSTIFYTCVKCK 119
                 78888888777777777777676666665554211222.......02334457888888888888888888888888888888877789999996 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.092        36      27      42 ..      12      27 ..       6      31 .. 0.80
   2 ?    5.2   2.2     0.045        18      10      35 ..      14      39 ..      12      42 .. 0.82
   3 ?    5.0   0.0     0.051        20       9      16 ..      86      93 ..      77     102 .. 0.79
   4 ?   -1.8   0.2       6.8   2.6e+03      29      32 ..     115     118 ..     109     120 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.092
                    EEESSSTCEEEEECSS CS
  Ribosomal_S27e 27 vkCisCgkvLvePtGG 42
                      C  Cg+ L  P  G
      CDO71729.1 12 LFCPDCGTLLSLPQDG 27
                    6799999999999877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.045
                    -TTTS-EEEEESS-SS-EEESSSTCE CS
  Ribosomal_S27e 10 CpdCenetvvFshaatvvkCisCgkv 35
                    CpdC+      +  +  v C++Cg+v
      CDO71729.1 14 CPDCGTLLSLPQDGEFEVVCEQCGHV 39
                    88888888888888888999999975 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.051
                    E-TTTS-E CS
  Ribosomal_S27e  9 kCpdCene 16
                    kCp+C++ 
      CDO71729.1 86 KCPECGHM 93
                    9****996 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 6.8
                     ESSS CS
  Ribosomal_S27e  29 CisC 32 
                     C++C
      CDO71729.1 115 CVKC 118
                     4444 PP

>> XAF1_C  XIAP-associated factor 1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.6    0.0086       3.4      19      33 ..      13      27 ..      10      35 .. 0.76
   2 ?    0.4   0.1       1.3   4.9e+02      19      25 ..      32      38 ..      28      44 .. 0.81
   3 ?    1.8   0.0      0.46   1.8e+02      11      24 ..      78      91 ..      65      93 .. 0.61
   4 ?   -1.4   0.0       4.6   1.8e+03      16      23 ..     111     118 ..      97     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0086
      XAF1_C 19 rCsqCgiLLPLptLn 33
                 C+ Cg+LL Lp   
  CDO71729.1 13 FCPDCGTLLSLPQDG 27
                6**********9655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.3
      XAF1_C 19 rCsqCgi 25
                 C+qCg 
  CDO71729.1 32 VCEQCGH 38
                6****95 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.46
      XAF1_C 11 eaaYDiLrrCsqCg 24
                e    + ++C+ Cg
  CDO71729.1 78 EDLLKVTEKCPECG 91
                34445557999998 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.6
      XAF1_C  16 iLrrCsqC 23 
                 i  +C +C
  CDO71729.1 111 IFYTCVKC 118
                 67788888 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.011       4.3       4      14 ..      14      23 ..      12      32 .. 0.73
   2 ?    3.2   0.5       0.3   1.2e+02       3      10 ..      32      40 ..      30      54 .. 0.73
   3 ?    7.1   0.1     0.019       7.4       2      10 ..      85      94 ..      84     104 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.011
     zf-IS66  4 CpcCGgllkpi 14
                Cp+CG+ll  +
  CDO71729.1 14 CPDCGTLL-SL 23
                *****975.43 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.3
     zf-IS66  3 tCpcCGg.l 10
                +C +CG+ +
  CDO71729.1 32 VCEQCGHvE 40
                7*****944 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.019
     zf-IS66  2 rtCpcCGg.l 10
                ++Cp+CG+ +
  CDO71729.1 85 EKCPECGHmE 94
                57*****944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 844.02
//
Query:       CDO71730.1  [L=373]
Description: hypothetical protein BN946_scf184920.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-37  129.8   0.0    1.4e-37  129.4   0.0    1.1  1  Peptidase_M1   Peptidase family M1 domain
  ------ inclusion threshold ------
      0.061   13.7   3.1          2    8.8   3.1    2.3  1  Peptidase_M61  M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   1.5e-41   1.4e-37      12     204 ..     182     370 ..     173     373 .] 0.88

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 1.5e-41
                   HHHHHHTS--SSSEEEEEEE.SSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHHHHH CS
  Peptidase_M1  12 fleeyfkvpYplpkldlval.pdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyleylil 107
                   +++e++  pY +  +d+++l p+f++g+MEn +l++++++ll+ d         r++++v++HEl H+WfGn Vt ++ +++wLnEG++ty+e+++l
    CDO71730.1 182 VTAETILPPYRFGVYDVLVLpPSFPYGGMENACLTFLTPTLLVGD---------RTLVDVVVHELTHSWFGNGVTQANSTHFWLNEGWTTYIERVLL 269
                   567778889***********99***********************.........99***************************************** PP

                   HHHSCCCH..CHHHHHHHCHHHHHHHHTSTT.HHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCT.HHHHHHHHHHHHHHCTTEEE-HHHHH CS
  Peptidase_M1 108 dklepewe..vseqllleeveealsedalde.shpitqevekpseidevFdsiaYeKGasllrmlekllg.eevFqkglksYlkefkyknaetedlw 200
                   + l+  ++  +s  +  +++ +al++ a++   +++    +  +++d+++++++YeKGa++l +le++lg  + F   +++Y++ f+ ++++ted  
    CDO71730.1 270 QLLHTPADrgFSFLIGRTALANALAQYAAKPkYQRLVIDFDVGEDPDDAYSTVPYEKGANFLLHLERVLGgLDAFLPYVREYVAAFSGRSITTEDWK 366
                   ***9955534333333345555655555444277777899999***************************99***********************99 PP

                   HHHH CS
  Peptidase_M1 201 dale 204
                   ++l+
    CDO71730.1 367 RHLY 370
                   9986 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.1   0.00023         2       3      54 ..     230     270 ..     228     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00023
                    HHHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHHHHHHH CS
  Peptidase_M61   3 lgllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYygdllla 54 
                    ++++ HE++HsW ++ +           ++ +++  w+ EG+T+Y++ +ll 
     CDO71730.1 230 VDVVVHELTHSWFGNGV-----------TQANSTHFWLNEGWTTYIERVLLQ 270
                    56788888888887654...........34556789***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2573.16
//
Query:       CDO71731.1  [L=221]
Description: hypothetical protein BN946_scf184920.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.027   13.0   0.3      0.034   12.7   0.3    1.0  1  Het-C         Heterokaryon incompatibility protein Het-C
      0.036   13.2   0.3      0.049   12.7   0.3    1.3  1  Effector_1    Effector from type III secretion system
       0.14   11.8   2.6       0.16   11.6   2.6    1.1  1  DUF4559       Domain of unknown function (DUF4559)
       0.67   10.5   6.7       0.23   12.0   2.2    2.3  2  Hrs_helical   Hepatocyte growth factor-regulated tyrosine kin
        1.1    9.5   7.0       0.26   11.5   2.0    2.3  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
        1.2    8.9  12.7       0.32   10.8   5.7    2.3  2  ERM           Ezrin/radixin/moesin family
        1.2    9.6  11.3       0.48   10.9   0.3    3.3  4  ZapB          Cell division protein ZapB
        2.8    6.3   7.0          4    5.8   7.0    1.3  1  FUSC          Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> Het-C  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.5e-05     0.034     264     398 ..      48     189 ..      34     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
       Het-C 264 GtfGgvDflhsvlGeasDkltqsevdeldaaleeaekss.......ssssksalksllsklp.........gtgddlaeeaeelkakseaqeaenasas 346
                    G  D  +s   +a D+l   e+    + l++ e+++       s         ++++           +tg++  +e+ +l+++ +a +++ ++ +
  CDO71731.1  48 DALGIDDLSYSTYADALDRLDADELALTRSLLRTREAQDeleehllS---------IVREKAfiekwmqtlQTGSHAEAEVASLQRQKAALASKAKEYQ 137
                 5679999999**************99999989888888845554442.........44333333444444467889999999***99999988888777 PP

       Het-C 347 eskanavpgvspnfdpeeva..kkiypilefrDkvvksiseaiekipgleklie 398
                 ++ +  ++++ p   p++++  + + ++l+ +D+v+k+   ++e   gl+  i+
  CDO71731.1 138 NELDAIMSDM-P-ESPVSITelAVMRKLLKKQDQVLKEKRAKVEAFQGLPPNID 189
                 7777777777.5.466664411456689**************999999987665 PP

>> Effector_1  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   2.2e-05     0.049     211     277 ..     105     175 ..      58     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.2e-05
  Effector_1 211 kvkellkrveadkkltt..eqkaklkdelngYadeleaiveqLaelkvllrklsv..svvegddeydeaft 277
                  ++ l++  +a++++++   qka l  ++++Y +el+ai++++ e  v + +l v  +  +++d++ +   
  CDO71731.1 105 WMQTLQTGSHAEAEVASlqRQKAALASKAKEYQNELDAIMSDMPESPVSITELAVmrKLLKKQDQVLKEKR 175
                 334444445566677752267889**********************9999999982223456665555444 PP

>> DUF4559  Domain of unknown function (DUF4559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.6   7.2e-05      0.16     182     307 ..      77     201 ..      47     205 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.2e-05
     DUF4559 182 tvpeleeaeeaie.ellkilkqefeislke...ddevrvltdvllslqklkeleeellkedatkldelvlraeeqkiskeellkelqvlkeflnknkdL 276
                 ++    ea+ + e  ll i++++  i+      + +++ +++v  slq  k      +ke    ld++++ + e+ +s  el     v++++l+k  + 
  CDO71731.1  77 SLLRTREAQDELEeHLLSIVREKAFIEKWMqtlQTGSHAEAEV-ASLQRQKAALASKAKEYQNELDAIMSDMPESPVSITEL----AVMRKLLKKQDQV 170
                 4555667777777334445544443333322455677777776.5666666666677788788*****99888888776666....************7 PP

     DUF4559 277 kenlkedvkklqeieekldkldedvtelkkk 307
                  + ++++v+ +q +   +d + + + e ++k
  CDO71731.1 171 LKEKRAKVEAFQGLPPNIDLARHALAEANEK 201
                 7799999*****9999999999988887776 PP

>> Hrs_helical  Hepatocyte growth factor-regulated tyrosine kinase substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.73   1.6e+03      48      71 ..      72      95 ..      53     118 .. 0.64
   2 ?   12.0   2.2    0.0001      0.23      39      91 ..     156     208 ..     119     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.73
  Hrs_helical 48 lkriqeqeekraeyeslqdklaqi 71
                 l+ + ++  +r+ +++l+++l  i
   CDO71731.1 72 LALTRSLLRTREAQDELEEHLLSI 95
                 555555555566666666665544 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
  Hrs_helical  39 kltamhsqllkriqeqeekraeyeslqdklaqikearealdalreehkeklrr 91 
                  +l  m++ l k+ q ++ekra++e++q    +i  ar+al +  e+h e +r 
   CDO71731.1 156 ELAVMRKLLKKQDQVLKEKRAKVEAFQGLPPNIDLARHALAEANEKHMELVRI 208
                  5677777777777889*******************************998775 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.0   0.00012      0.26      39     106 ..      82     149 ..      64     151 .. 0.84
   2 ?   -0.2   0.2       0.5   1.1e+03      45      74 ..     167     179 ..     154     212 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                   HHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS-- CS
  Seryl_tRNA_N  39 relqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklllaiPN 106
                   re+q elee      +  + I+k ++  +  ++  aev++l+ + +al  + ke ++el+++++ +P 
    CDO71731.1  82 REAQDELEEHLLSIVREKAFIEKWMQTLQTGSHAEAEVASLQRQKAALASKAKEYQNELDAIMSDMPE 149
                   6666666666666666667788888888999999******************************9997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.5
                   HHHHHHHHHHHHHHCCCCCCTTS-TCCCCC CS
  Seryl_tRNA_N  45 leelqaerNelskeIgkakkkkedaeelia 74 
                    +++                  +++ + ++
    CDO71731.1 167 QDQVL-----------------KEKRAKVE 179
                   22222.................22222222 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.8     0.062   1.4e+02     100     136 ..      66     102 ..      54     123 .. 0.65
   2 ?   10.8   5.7   0.00014      0.32       4      62 ..     123     181 ..     120     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.062
         ERM 100 rkeeeaerLkeeleeareaeeeakekllealstpsks 136
                 r +++   L + l+++rea+ e +e ll ++++++  
  CDO71731.1  66 RLDADELALTRSLLRTREAQDELEEHLLSIVREKAFI 102
                 5566666788888888888888888888888877443 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
         ERM   4 erekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeee 62 
                 +r+k+ l  + k++q+e ++ + ++ es   + +La  ++ ++++ + L++k+a++e+ 
  CDO71731.1 123 QRQKAALASKAKEYQNELDAIMSDMPESPVSITELAVMRKLLKKQDQVLKEKRAKVEAF 181
                 79*****************************************************9874 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.2   9.5e+03       8      18 ..      35      45 ..      28      50 .. 0.65
   2 ?   -0.1   0.1      0.58   1.3e+03      43      66 ..      73      96 ..      57      98 .. 0.73
   3 ?   10.9   0.3   0.00021      0.48      12      50 ..     104     142 ..     103     148 .. 0.90
   4 ?    4.2   0.7     0.027        60      20      68 ..     154     215 ..     153     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.2
        ZapB  8 qLEskiqkaid 18
                + E++++ ++d
  CDO71731.1 35 EVEERVDVLVD 45
                45777777777 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.58
        ZapB 43 eleeeneqlkeereawqerlkkLL 66
                +l++++ + +e + +++e+l +++
  CDO71731.1 73 ALTRSLLRTREAQDELEEHLLSIV 96
                445677778888888888887665 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00021
        ZapB  12 kiqkaidtitlLqmeieeLkeeneelkeenreleeeneq 50 
                 k+ ++++t ++   e++ L++++++l+++++e + e+++
  CDO71731.1 104 KWMQTLQTGSHAEAEVASLQRQKAALASKAKEYQNELDA 142
                 8889999999999********************999875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.027
        ZapB  20 itlLqmeieeLkeeneelkeenrele................eeneqlkeereawqerlkkLLgk 68 
                 it+L    + Lk++ + lke+ +++e                +   +  e + ++ +  + LLgk
  CDO71731.1 154 ITELAVMRKLLKKQDQVLKEKRAKVEafqglppnidlarhalA---EANEKHMELVRIRERLLGK 215
                 6677777788999999****99999988888888888874442...3333333333333345555 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.0    0.0018         4     157     303 ..      59     205 ..      37     220 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0018
        FUSC 157 alrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpe 255
                 +++++l++l +d lal++++l+ +e++++ e+++  ++++ + +e++ + + + s+      + +++l+++ +al + + +++ +l +  +   +++ +
  CDO71731.1  59 TYADALDRLDADELALTRSLLRTREAQDELEEHLLSIVREKAFIEKWMQTLQTGSHA----EAEVASLQRQKAALASKAKEYQNELDAIMSDMPESPVS 153
                 334445555555555555555555555555555555555555555555555554444....23333333333333333333333333333333322222 PP

        FUSC 256 ......laallaelaaleaaaaaealeaalaalrarlralrraleadadtaall 303
                       +++ll++ ++    + + a  +a + l+  ++ +r+al+++++ +++l
  CDO71731.1 154 itelavMRKLLKKQDQ--VLKEKRAKVEAFQGLPPNIDLARHALAEANEKHMEL 205
                 2221222222222222..222334444445555555555555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1569.23
//
Query:       CDO71732.1  [L=337]
Description: hypothetical protein BN946_scf184920.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   41.8   0.0    3.9e-10   39.9   0.0    1.8  1  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.2e-14   3.9e-10      13     308 ..      10     328 ..       5     329 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.2e-14
        GET2  13 ERRqaKmakGgAssRLnkItgqgssvksst...tsvLd..................epaaekttpasttasssssas......ehddp..eiediseia 82 
                 +RR+a +++G   +RL +It+ g +   +    + +L                         t+pa +t +s + +       e + +    +d+s   
  CDO71732.1  10 ARRKAILSRG--GDRLARITSSGRGEGATYlhdDPPLAplpnrpglsdfvgetsdmP-----TPPAASTPASRNVSGsarspfEAAGLgsGAPDPSVWS 101
                 69********..8*********9655544455556666999*********9655542.....4443333333222223344566666665666655553 PP

        GET2  83 vkpkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakseeetssspeeaeyqqqlleyhkyqvk 181
                  ++ +t+  ++   ++ +  pe+pq + l  + + +  +++ ++s da + t d+++ l++ + qg++g a    ++      + + +q  + +++ +k
  CDO71732.1 102 EEQ-QTQFMNALLGAA-ARGPEQPQPR-LPSSSAAA-PSASASASPDAPQQTEDPMAALMSALRQGGAG-APPGFQFPGAGVGMGTPAQPPKSKTFVQK 195
                 333.343333333333.3479999999.66666666.4555556667778899****************.77777888999999*************** PP

        GET2 182 klkarfllvrllllllnfvYhv...frssks.................alvralteasvrnFftvFltfEvvllsiyylllkkiekenkvktlnnnsli 260
                 +l ++++l +++ll +++++      +++++                 ++ ++    +   Ff++F+t+ +vl s +++          ++ ++   l+
  CDO71732.1 196 LLPLIHVLAAWALLAYFVLWKEpeaYEAKTHglglaesrwrrwadlswKSPEDGWGVQPVPFFWAFTTLALVLHSWRVFTN--------LDPVQPPMLL 286
                 **************97777777776444444888888899999888775555555555558****************9986........4556666666 PP

        GET2 261 lklvslvpegvlPianlrgkvalalkYwevlsmlltDlslvvvlfGll 308
                 + ++  +p        l  +++  +kY ++ s+++ D++ vv+ +Gll
  CDO71732.1 287 ALALPSLPP------PLPAIITNGMKYLQIGSVFFDDIAAVVFGLGLL 328
                 555553444......4779***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2595.56
//
Query:       CDO71733.1  [L=151]
Description: hypothetical protein BN946_scf184920.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-10   39.8   0.1    6.2e-10   38.8   0.1    1.5  1  L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI


Domain annotation for each model (and alignments):
>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1   3.5e-14   6.2e-10       1      50 [.      48     102 ..      48     104 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.5e-14
                    HHHHHTTTTHHHHTT-TTSEEEEEESS-SS.....-EEEEE-SS--B--EE-SS- CS
  L51_S25_CI-B8   1 aRkFwrknLprlkykNPavpivvrrrsgdg.....PallaiYfngrektidlknk 50 
                    aR+F+++ Lpr+ y+NP+v i v ++ +++     P l+ +  ng ++++d+++k
     CDO71733.1  48 ARHFVKEDLPRIRYANPTVDIQVDKKPKTKeetwkPELVVELKNGTTHKLDIDGK 102
                    8************************66666679*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1177.11
//
Query:       CDO71734.1  [L=416]
Description: hypothetical protein BN946_scf184920.g18, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-31  109.1  20.2    4.6e-31  108.8  20.2    1.1  1  YL1        YL1 nuclear protein
  ------ inclusion threshold ------
        2.1    8.2  11.1        2.4    8.0   1.6    2.4  2  RAP80_UIM  RAP80 N-terminal ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8  20.2   5.2e-35   4.6e-31       1     244 []       9     248 ..       9     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 5.2e-35
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1   1 RarRstAGnrlkkLleqeeeedelellFaEeedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskk 99 
                 R++RstAGnr+++ l++ +  +++     + ++D++f  ++  +e   ++ df+s++e  e+++ee +   e  ++++e ++r k  ++    +++++ 
  CDO71734.1   9 RSKRSTAGNRMEAALAEFK-AEDIGV---DMDEDADFALDKGMDE---FEADFESTDE--EGEQEEVDATAESIIRQEETRAR-KTARTHL--ERITAL 95 
                 99*********77774544.888888...99********988776...8999*88887..45666666677776666666666.2223333..444444 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 100 kkkkqkkkkkkkidpqakeprpkkks.eraswlpa.eslltpk......................rRkssRastvenkeqleerlkereerrkkilerm 174
                 + ++q+++ + ++   +++++ +k+  +r+s   a +++   +                      rR+s+Ra+tv+n++++ +r+k++e++        
  CDO71734.1  96 AHARQADTFNPQLSAPPEKEKGEKRPrRRVSLGVAvDAE---TgevtsldtgaveeaesasaalgRRHSMRAHTVANTSATVNRVKDEERK-------- 183
                 443333333332222333445566664555555553333...122445667788888899999*************************999........ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 175 rkkaarkkkkkkerplTQeerLaeAketEeeNlksLnryeeqEeekkkeqraklaalkrrklgpvirflS 244
                 +  a +++k  k++ lTQee++a+A+ +Ee N++++++y+  Eeek++++r  +  ++    gp +r++S
  CDO71734.1 184 QFSAPKRTK-SKTKMLTQEELIARALAMEEGNIEEHKNYLTVEEEKRRKARLVRTSVQ----GPLLRWIS 248
                 333333333.34478********************************88887776777....*******9 PP

>> RAP80_UIM  RAP80 N-terminal ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.6   0.00026       2.4       7      46 ..      34      72 ..      31      77 .. 0.74
   2 ?    4.7   2.5    0.0029        26       4      42 ..     194     232 ..     191     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00026
   RAP80_UIM  7 qmtEeEqFALALkmsEqEArqvndqeEeEEeLLRkAiAEs 46
                 m E+  FAL   m E EA      eE E +    A AEs
  CDO71734.1 34 DMDEDADFALDKGMDEFEADFESTDEEGE-QEEVDATAES 72
                699****************7544444433.3334677777 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0029
   RAP80_UIM   4 kiaqmtEeEqFALALkmsEqEArqvndqeEeEEeLLRkA 42 
                 k   +t eE  A AL m E + ++  +    EEe  RkA
  CDO71734.1 194 KTKMLTQEELIARALAMEEGNIEEHKNYLTVEEEKRRKA 232
                 556689*******************99999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1303  (0.0726756); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2641.28
//
Query:       CDO71735.1  [L=357]
Description: hypothetical protein BN946_scf184920.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-11   45.0   0.1    1.4e-10   41.6   0.1    2.1  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.017   15.1   1.1      0.042   13.8   0.1    2.1  2  DUF282    Caenorhabditis protein of unknown function, DUF282


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   1.5e-14   1.4e-10      11     200 ..      13     219 ..      11     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.5e-14
                 CEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHH.HTT-B--B-CTTBS-EEETTE..EEEEEE----EE-SS.....HHHHHHHHHHHHHH CS
         APH  11 nrtylvttpa.gryvlrrnppa..raaeeirrevallrlLa.kagvpvPevlagdtddeeigl..lfalieyvpgrsllr.....klsaaqlpelleal 98 
                 nr+++++ ++ ++++ +++ p+    + ++++eva l++L+  +g+pvP v a++  +e ++   +++++e + g   l       +s + +p +  +l
  CDO71735.1  13 NRVFELNFDHgKEFIAKIPFPSagPKHYRTPSEVATLDYLRtCHGIPVPTVRAWCSRAESSPVgtEYVMYEKLQGIGSLYykgdvDESLRCRPLYKVDL 111
                 9*********66******99999999999************55666*********99999999888888888887665555677766666666666667 PP

                 HHHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.....SS-EEEE-SS-SGGGEEEC....TTEEEE CS
         APH  99 geflaalhqvd.paalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg.....elptvllHgDlhpgNllvd..pddgrvtG 189
                 + + +   +++ +++ + ++++a +++l++++e ++++++a+     +  +   +++ l+a  p        p +l+H Dlh  N++v+  +d   v+G
  CDO71735.1 112 HPTMGSG-RFRvGPTVGREFWRAGRAALDIDREPSCRARHALIHASSARVCPG-IYRLLPASGPLdpgdlLRPYTLWHPDLHVSNIIVTesADSCSVVG 208
                 7766664.555577788888888989999999999865555555553333333.77777777777999*********************998889999* PP

                 E---TT-EEEE CS
         APH 190 viDfedaglgp 200
                  iD++ a+++p
  CDO71735.1 209 SIDWQGAVIAP 219
                 *******9986 PP

>> DUF282  Caenorhabditis protein of unknown function, DUF282
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.6e-06     0.042      11      33 ..      53      75 ..      51      82 .. 0.87
   2 ?   -2.2   0.1      0.47   4.2e+03      15      21 ..     243     249 ..     242     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-06
      DUF282 11 ttCqGvgiPslsdwCataaevpv 33
                 tC G  +P    wC +a++ pv
  CDO71735.1 53 RTCHGIPVPTVRAWCSRAESSPV 75
                69****************99887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.47
      DUF282  15 GvgiPsl 21 
                 G g+Ps 
  CDO71735.1 243 GAGMPSI 249
                 8899985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2633.42
//
Query:       CDO71736.1  [L=797]
Description: hypothetical protein BN946_scf184920.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-54  182.6   0.5    5.3e-51  173.3   0.4    2.3  2  MutS_V    MutS domain V
    2.8e-23   83.1   4.8    2.9e-23   83.1   0.7    2.8  2  MutS_III  MutS domain III
    6.5e-05   23.2   0.1    0.00019   21.7   0.0    1.9  2  MutS_IV   MutS family domain IV
  ------ inclusion threshold ------
       0.08   13.0   0.0       0.19   11.8   0.0    1.6  1  AAA_14    AAA domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.4   1.2e-54   5.3e-51       1     146 [.     505     649 ..     505     684 .. 0.92
   2 !    6.7   0.0    0.0015       6.7     162     185 ..     709     732 ..     696     735 .. 0.85

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 1.2e-54
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 +++ Gpnm+Gkstyl+q+al++++a  G+fvpae+ +++i d+++tR++ +Ddl+k+ stF  Em+ ta il  at++slv++DE+GRGts+ +G+ai+
  CDO71736.1 505 QIVQGPNMSGKSTYLKQIALLTVMAMCGCFVPAEYGSFRIHDALLTRLSNDDDLEKNLSTFANEMASTAMILGLATADSLVLIDEVGRGTSVREGVAIS 603
                 5899*********************************************************************************************** PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTE CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavkeeeed 146
                 +a+ae l++  k++++fatH+ elt+  +++++v nlhl+v++++ +
  CDO71736.1 604 HAIAEELIR-LKSYVFFATHFGELTTTLSRQPSVINLHLSVQKSRAT 649
                 ********8.9******************************976533 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
                 -HHHHHHHTT--HHHHHHHHHHHH CS
      MutS_V 162 yGikvaklaglPesvverArevlk 185
                  G++ a+la lP+sv+++Ar+v++
  CDO71736.1 709 SGLDLARLADLPASVISEARRVAD 732
                 59******************9876 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.7   6.5e-27   2.9e-23       2     191 .]     149     455 ..     148     455 .. 0.74
   2 ?   -0.9   0.2      0.35   1.6e+03      78      96 ..     553     574 ..     539     771 .. 0.53

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 6.5e-27
                 HHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHH.................HHHHHHHHH.T..TT.HHHHHHHHTT--..-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxx.xxxxxxxxxxxxxxxxxx..xx RF
    MutS_III   2 TlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeI.................naRldaVee.leneelreelrellrrlp..Dl 80 
                 + rnLe++ n++   +++sL+g+l++  T+mGaRlLr ++l+P+t l+                   +aRldaVee +++e+   e+ ++++ l   Dl
  CDO71736.1 149 SARNLELVGNMSMRRSAHSLFGLLNHAFTPMGARLLRVNILAPITGLALNrlgrphlltlalvkpalEARLDAVEElVQSEDRFGEVKNAFKPLNklDL 247
                 689****99866667789*********************9999987654344888999999999999*********77777766777777776559*** PP

                 HHHHHHHHTT---HHH...........HHHHHHHHHHHHTTTTT---SSTHHHHH.................HHHHHHHHHHB-SS--SSGGGS--B-T CS
                 xxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III  81 eRllsrislgkakard...........lkallealkaleelvallekeklaesee.................eslaelleeaideeplalekegedlra 151
                 ++l++++++++++ ++           +++l++ +++l+ lv++l+ ++++  +                  +         ++              +
  CDO71736.1 248 DKLIASLASSEVRETNsaktasarvsqMLNLRNIVQSLPRLVKALQGSRSQLLQIiaegglngvnarvyavrA---------NF--------------N 323
                 *****99997443222223333333336668888888888888886554432222555555554443333321.........22..............1 PP

                 ............................................................................................HHHHHHH CS
                 ............................................................................................xxxxxxx RF
    MutS_III 152 ............................................................................................iealeqe 158
                                                                                                                l ++
  CDO71736.1 324 rlldvaretykenvgdiyglrnrlaeefdlplslvyrdsdagfvfalkksdledaggelprgfiditaqkgrlvfssielkrnarmkdaldeSLILSNK 422
                 222222233333335555567788888888888888888889999999999999999999999999999999999999999999999988766666699 PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 159 lfqelleeveealerlrrlaealaeLDvllSlA 191
                 ++++l +e++  + +l++++ea+a LDvl+S+A
  CDO71736.1 423 IIADLTDEIVVDIGALYKASEAVALLDVLWSFA 455
                 *********888********************9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
                 -...-HHHHHHHHHTT---HHH CS
                 x...xxxxxxxxxxxxxxxxxx RF
    MutS_III  78 p...DleRllsrislgkakard 96 
                 +   Dle+ ls ++++ a+   
  CDO71736.1 553 SnddDLEKNLSTFANEMASTAM 574
                 3344777777777664332111 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.3e-08   0.00019       1      90 [.     321     413 ..     321     415 .. 0.85
   2 ?   -3.3   0.1       2.8   1.2e+04      16      41 ..     730     755 ..     726     758 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.3e-08
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBE.ECCCSSSEEEEEE-TCC....CTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgikslk.veynkvlGyylevtrse....akkvpkefirlqtlknseryttaelkkleaelleae 90 
                 +f+  Ld +r++++e   ++  l  +++e++++  l+ v +++  G+++ + +s+      ++p  fi ++ +k+   +++ elk+ +a++++a 
  CDO71736.1 321 NFNRLLDVARETYKENVGDIYGLRNRLAEEFDL-PLSlVYRDSDAGFVFALKKSDledaGGELPRGFIDITAQKGRLVFSSIELKR-NARMKDAL 413
                 6999*****************************.55524446679**********6666666788*******************86.66666665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.8
                 HHHHHHHHHCCCCCCCT-TTBEECCC CS
     MutS_IV  16 lekeleeleekereklgikslkveyn 41 
                 + ++l+e ee+ +++++ ++l +++ 
  CDO71736.1 730 VADFLTEQEEQDQRQSRTSKLAIRRK 755
                 56788888888888999899888766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.2e-05      0.19       5      76 ..     505     593 ..     501     612 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikell......vkkesilyinldderdkkladpe...kllelilek.lke........ekktylflDEiqev 76 
                  +++G+  +GK+t+lkq++            + ++  + + d  +++l++ +   k+l+ + ++ + +          ++++++DE+ + 
  CDO71736.1 505 QIVQGPNMSGKSTYLKQIALLTVmamcgcFVPAEYGSFRIHDALLTRLSNDDdleKNLSTFANEmA-StamilglaTADSLVLIDEVGRG 593
                 689***************954448999994455555555555555444433322233333333312.13566677778999*****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 5837.96
//
Query:       CDO71737.1  [L=381]
Description: hypothetical protein BN946_scf184920.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-15   55.0   0.7    3.1e-14   53.3   0.7    1.9  1  DAO            FAD dependent oxidoreductase
    0.00042   19.6   0.1    0.00085   18.6   0.1    1.4  1  Thi4           Thi4 family
     0.0017   17.7   0.0     0.0023   17.2   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0095   16.1   0.1      0.019   15.2   0.1    1.5  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.019   14.1   0.0      0.031   13.4   0.0    1.3  1  FAD_binding_2  FAD binding domain
      0.049   13.6   0.3       0.11   12.5   0.3    1.6  1  NAD_binding_9  FAD-NAD(P)-binding
       0.18   10.9   0.0       0.35   10.0   0.0    1.4  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.7   1.2e-17   3.1e-14       1     101 [.      66     238 ..      66     375 .. 0.52

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.2e-17
                 EEEEECTSHHHHHHHHHHHHT..T..EEEEESSSSTTSSGGGSSEEEEESSS.STHHSTH...........HHHHHHHHHHHHHHHHHHHHSS..TTSE CS
         DAO   1 dvviiGGGiiGlstAyeLarr..g..VtllekgdiagsgaSgrnsgllhsgl.rylpeas...........elarlslealeelreleeelgi..didy 81 
                 dvv+iG+Gi+G s+ y L  r  g  ++ le++  ++sga+grn+g++ + l ++++  +            ++ + ++ l e ++++ee+gi  + ++
  CDO71737.1  66 DVVVIGSGITGTSVVYNLLSResGlkIVMLEAR-GVCSGATGRNGGHINPPLyHDYE--ElkdkhgervakVMVAFRRAHLIEVQRIAEEEGIlkESQV 161
                 9*****************866456*********.7777***********99963333..3346779988543333333334555999999999664667 PP

                 EEEEEEEEESS........HHHHHHHH..................................................H CS
         DAO  82 rrtGllslaad........eeeleald..................................................k 101
                 r+t +l +++         +  lea++                                                  +
  CDO71737.1 162 RETEHLDVFECpktfaeskA-KLEAWRaampvesstfvayerdeaiklpagehelmfgggwaqacddglpeigiaddA 238
                 77777777642122222221.233333444444444444444444444444444444444444444444444444440 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   3.3e-07   0.00085      15      61 ..      64     110 ..      55     116 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.3e-07
                 HTEEEEEEE--SHHHHHHHHHH.HHCTTS-EEEEESSSS--TTTT.TTS CS
        Thi4  15 yaesDvvivGaGssGLtaayyl.akkpdlkvailersvspGGGaw.lGG 61 
                 y  +Dvv++G+G +G +  y l +++ +lk+++le++    G ++  GG
  CDO71737.1  64 Y--ADVVVIGSGITGTSVVYNLlSRESGLKIVMLEARGVCSGATGrNGG 110
                 4..59**************9862666*********98555444431455 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.9e-07    0.0023       2      38 ..      66     104 ..      65     175 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.9e-07
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHC CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclng 38 
                  dvvviG+G+ G+++  +l    +g+k++++e++g c + 
   CDO71737.1  66 DVVVIGSGITGTSVVYNLLSreSGLKIVMLEARGVCSGA 104
                  8****************998789********77666543 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.5e-06     0.019       1      35 [.      69     105 ..      69     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.5e-06
                    EE--SHHHHHHHHHH.HCC.TEEEEEE-SSSSSSGGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylL.aka.gfdvlllekrdrlGGra 35 
                    ++G+G++G +  y L +++ g++++ le+r  ++G  
     CDO71737.1  69 VIGSGITGTSVVYNLlSREsGLKIVMLEARGVCSGAT 105
                    8*******999988526668***********999954 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.031       1      56 [.      66     123 ..      66     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
                    SEEEE--SHHHHHHHHHH..HHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGS CS
  FAD_binding_2   1 DviViGsGlAGLaAAlea..aeaGlkvavvekeqefggatawsqGgidavlspeqkka 56 
                    Dv+ViGsG+ G +  +++  +e Glk++++e  ++ +gat   +G i+ +l++  +++
     CDO71737.1  66 DVVVIGSGITGTSVVYNLlsRESGLKIVMLEARGVCSGATGRNGGHINPPLYHDYEEL 123
                    9*************99973366999***********************9997776444 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   4.3e-05      0.11       1      39 [.      68     103 ..      68     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgag 39 
                    +++G G++G++v+ +Ll+r   +s l+i + + ++  +g
     CDO71737.1  68 VVIGSGITGTSVVYNLLSR---ESGLKIVMLEARGVCSG 103
                    69*****************...6********99887644 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00014      0.35     192     222 ..      65      95 ..      50     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
  K_oxygenase 192 kriaVvGsGqSaaeifedllrrqkkvelklv 222
                   +++V+GsG ++  ++++ll+r++  ++ ++
   CDO71737.1  65 ADVVVIGSGITGTSVVYNLLSRESGLKIVML 95 
                  68********************998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2894.47
//
Query:       CDO71738.1  [L=283]
Description: hypothetical protein BN946_scf184920.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-64  215.5   0.0    7.9e-64  215.2   0.0    1.1  1  BCIP      p21-C-terminal region-binding protein


Domain annotation for each model (and alignments):
>> BCIP  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0   4.4e-68   7.9e-64       2     206 .]      24     229 ..      23     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 4.4e-68
        BCIP   2 vnVdFeffdpeee.dfhgiknLlrqlffldaeevdlseLadlileqktvGsvvkvdgeesDpvygllsvlnlkkhkekecikqlkeyllekakksassk 99 
                 v+VdFeffdp+++ df ++k+L++ql++ da+ + +++Ladlil+q+ vGs+vk+dg esDp +++l+vlnl+ h+e ++ik+l++y+lek++     +
  CDO71738.1  24 VDVDFEFFDPNPDiDFLALKRLITQLLQADAQLIPVHDLADLILSQPLVGSTVKCDGRESDP-FAFLTVLNLHVHRERPSIKALVSYILEKSSVDPVLH 121
                 8*************************************************************.****************************9988888* PP

        BCIP 100 kklkklLss...skdkkvglliseRliNiPvevvpplykmLleeiewaqeeeeekesykfthylilskvykevkskede..kkkkkkkkkkkkkkksee 193
                 +kl++lL     ++++++g+++seRliN+Pv+++p++y+mL +ei+wa +++   e+y+f+ +li+s++y+ ++++  e    +  + k++++++ +e 
  CDO71738.1 122 SKLQSLLGPaglASQNHLGFVFSERLINMPVQIMPHMYRMLADEIQWALDDN---EPYDFKEVLIISRIYRLTEEEAAElhA-SAPRTKRQRQSQPNEG 216
                 *******999886889*********************************999...*****************9988888852.3333334444555689 PP

        BCIP 194 deliyfhpEdeil 206
                 + ++ fhpEd i+
  CDO71738.1 217 AGVYPFHPEDDII 229
                 9*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2059.74
//
Query:       CDO71739.1  [L=961]
Description: hypothetical protein BN946_scf184920.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1016.1   0.0          0 1015.9   0.0    1.0  1  Vps35     Vacuolar protein sorting-associated protein 35
  ------ inclusion threshold ------
        7.7    6.6   6.1         62    3.7   0.1    3.9  4  Tsi6      Tsi6


Domain annotation for each model (and alignments):
>> Vps35  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1015.9   0.0         0         0       1     728 [.      15     885 ..      15     887 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1015.9 bits;  conditional E-value: 0
       Vps35   1 lLeealavvkeqsflmkraleedklmdaLkhasnmlseLrtssLsPkqYYeLYmavfdeLrhLssyLkdehkkkkkkladLYelVQyagnivpRLYLli 99 
                 lL+e+la+vk q ++mkr+le d+lmdaLk+as ml+eLrtssL+PkqYYeLYmavfd+LrhLs+yL+d+h +++++ladLYelVQyagnivpRLYL+i
  CDO71739.1  15 LLSESLATVKIQVQQMKRHLELDQLMDALKSASLMLAELRTSSLTPKQYYELYMAVFDALRHLSNYLYDAHVQGRHHLADLYELVQYAGNIVPRLYLMI 113
                 599************************************************************************************************ PP

       Vps35 100 tvGtvyikskdapakeilkDlvEmcrGvQhPiRGLFLRyYLsqmtkdlLpdteseeeeeegelkdsieflltNFiEmnkLWvRlqhqghsrerekreke 198
                 tvG+vy++++dap+ke++kD++Em+rGv hPiRGLFLR+YLs++t+d+Lp ++  + +++g+l+dsi+f+ltNFiEmnkLWvRlqhqghsrerekre+e
  CDO71739.1 114 TVGSVYMSIPDAPVKEVMKDMLEMSRGVLHPIRGLFLRHYLSGQTRDHLPVGN--DPGPKGNLQDSINFVLTNFIEMNKLWVRLQHQGHSREREKREME 210
                 ***************************************************96..779***************************************** PP

       Vps35 199 RkeLkiLVGsnLvrLsqLegvdlelYkekiLpkileqivqcrDvlaQeYLldviiqvFpdefhlatLdkllsailklnpkvnikeilisLidRLakyae 297
                 RkeL+iLVG+nLvrLsqL+gvdl++Y++ iLp++l+qiv c+Dv+aQeYL++v+iqvF+defhl+tL  +lsa+++l+pkvnik+i+i+LidRLa+ya+
  CDO71739.1 211 RKELRILVGTNLVRLSQLDGVDLDMYQRVILPTVLQQIVVCKDVIAQEYLMEVVIQVFTDEFHLYTLGPFLSATAQLHPKVNIKQIVIALIDRLAAYAA 309
                 *************************************************************************************************** PP

       Vps35 298 r.................................................................................................. 298
                 r                                                                                                  
  CDO71739.1 310 Reaenedpeetkrqeeaaarrlaekvkqarsrhsagqiasgdsatavsnewgstptspvasekpdptsptttvngaaeegeaekngkgkekdtgepqqv 408
                 *************************************************************************************************** PP

       Vps35 299 ekksevpedvdlfevfweqleelvearpdlsledilallesllnlslklypdnlenvdkvlelaaeklkevel.eeleskeaeeellkLLlapikslks 396
                 +k +++pe+v+lfevfw+q+ el++arpdls++di+all+sl+nls+++ypd+le+vd+vl++aaek+ke+   ++l++++++ +l++LLlapi+s++s
  CDO71739.1 409 RKFRGIPENVKLFEVFWHQVVELIKARPDLSIQDITALLVSLTNLSVSCYPDRLEYVDQVLGFAAEKIKEFADsPDLHHPQTTANLQALLLAPINSYQS 507
                 999*******************************************************************887899*********************** PP

       Vps35 397 vltvlklenykellsllsyktrkkvaleivdaileeketkietleevekllellsvlikdekd........................keeeefaeeqel 471
                 vlt+l+l++y +ll++++y+ r+ ++++iv+++l+ +et iet+e+v+++lel++vli+d+ d                        +e+ee+aeeq++
  CDO71739.1 508 VLTLLALQQYVALLNQQPYSVRRILSHSIVSSVLR-NETVIETPEDVNGILELCHVLIRDQADagtgpgahvpppvhvkdsrrgpyhHEREELAEEQGW 605
                 **********************************8.67*********************99977899999******9999888888644489******* PP

       Vps35 472 vaklvhliknddldkqfklllllrkkllkggekrikytlpalitallklarklkklkkkekekkekleekvkklfkfihqliselvskaeaaelalklf 570
                 va+++hl+++d+ld qf++l+++r+++++gge r+++t+palit+++kl+r+++   ++e+  ++++++kv +++kf++ql+s l ++++a+ +al+lf
  CDO71739.1 606 VARMIHLFRSDNLDVQFEILQTARRHFETGGE-RMRFTYPALITSAIKLCRRYH---NREHL-EDDWQSKVATILKFVRQLTSILHNTVDAPAIALRLF 699
                 ***************************99988.********************4...45555.579************************99******* PP

       Vps35 571 lqaalvadqleleeiayefftqaftiYeesisdskaqlqaivliigtLqktrslseenyetLitkltlhaskLlkkkdqcravllcshLfw........ 661
                 l aa++ad++++e+++y++++ af++Yeesis+s+aqlqai+liigtLq +r++se+ny+tLitk++lh++kLlkk++q+ av l+shL+w        
  CDO71739.1 700 LLAAQIADECGFENLTYDMYVDAFSVYEESISESRAQLQAITLIIGTLQGARVFSEDNYDTLITKAALHGAKLLKKPHQANAVNLASHLWWqeippeee 798
                 *******************************************************************************************99999888 PP

       Vps35 662 .............ee.......eekyrdgkrvleCLqkslriAdsimdnavslelfveiLnkylyyfekgneevtekyingLielik 728
                               +       +   +d+krvleCLqk+lriA+s+++++ +++l+++ L++ylyy ++g ++vt k++n+L+eli+
  CDO71739.1 799 paeaykekaekgsPKeegegakAYPLQDSKRVLECLQKALRIANSATEEIITIQLYCDTLDQYLYYLDRGAPAVTPKFVNSLVELIT 885
                 88777766655550056778776799************************************************************7 PP

>> Tsi6  Tsi6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.99   8.9e+03      10      42 ..      48      83 ..      40      87 .. 0.62
   2 ?    0.6   0.2     0.068   6.1e+02      57      69 ..     306     318 ..     302     327 .. 0.83
   3 ?    2.5   0.0     0.017   1.5e+02       3      24 ..     462     483 ..     460     500 .. 0.80
   4 ?    3.7   0.1    0.0069        62       2      35 ..     830     863 ..     829     868 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.99
                HHHHHHHHHHSTT-H...HHHHHHHHHHHHHHHHH- CS
        Tsi6 10 lalvqkrekalpgfp...lYasieqqLeylkdvleg 42
                l l++ r ++l   +   lY  + + L+ l ++l +
  CDO71739.1 48 LMLAELRTSSLTPKQyyeLYMAVFDALRHLSNYLYD 83
                455566665554433333788888888888887765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.068
                 HHHHHHHTTT-HH CS
        Tsi6  57 alAskeFeetdpe 69 
                 a+A++e e++dpe
  CDO71739.1 306 AYAAREAENEDPE 318
                 8***********9 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHSTT-H CS
        Tsi6   3 ldyvdralalvqkrekalpgfp 24 
                 l+yvd++l  ++++ k++ ++p
  CDO71739.1 462 LEYVDQVLGFAAEKIKEFADSP 483
                 9***************999988 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHH CS
        Tsi6   2 aldyvdralalvqkrekalpgfplYasieqqLey 35 
                 +l+ +++al++++   ++++ ++lY  + +q  y
  CDO71739.1 830 VLECLQKALRIANSATEEIITIQLYCDTLDQYLY 863
                 5899*********************988888444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 5989.46
//
Query:       CDO71740.1  [L=1798]
Description: hypothetical protein BN946_scf184920.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.8e-106  356.0   0.0   2.8e-106  355.4   0.0    1.3  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   2.7e-103  345.0   0.0   4.4e-103  344.4   0.0    1.3  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
    1.9e-74  249.4   0.0    3.6e-74  248.5   0.0    1.5  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    2.6e-67  226.4   0.0    4.6e-67  225.6   0.0    1.4  1  RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
    1.1e-48  165.2   0.0    3.6e-48  163.4   0.0    2.0  2  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    2.3e-48  163.6   0.7      5e-48  162.5   0.7    1.6  1  RNA_pol_Rpb1_7  RNA polymerase Rpb1, domain 7
    1.1e-35  121.9   0.0    2.2e-35  120.9   0.0    1.5  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
    1.9e-06   27.9 112.6      0.028   14.8   2.7    9.7  8  RNA_pol_Rpb1_R  RNA polymerase Rpb1 C-terminal repeat
  ------ inclusion threshold ------
        1.7    6.5  24.5        2.7    5.9  24.5    1.2  1  Herpes_BLLF1    Herpes virus major outer envelope glycoprotei


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.4   0.0  1.4e-109  2.8e-106       2     312 .]      14     412 ..      13     412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 355.4 bits;  conditional E-value: 1.4e-109
                     E---EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT-----EEEEEECEEE-HHHHHHHHHHCTTC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkkeCeghfGhieLakPvfhigffklilkilecv 96 
                     +k+ e+qfgi+speei+++S ++++++e+++e+++kP+ gGl+D+r+gtid++++C+tCg+ ++eC+ghfG+ieLa+Pvfh gf+ +++kilec+
      CDO71740.1  14 RKVREVQFGILSPEEIKAYSNIKIEHPEVMDETTHKPKLGGLMDPRMGTIDRNFKCQTCGEGMSECPGHFGYIELARPVFHPGFIVKVKKILECI 108
                     689******************************************************************************************** PP

                     ETTTTEBSS-TTSH....HHHHHHCSSSCC...........................................................CCHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................................xxxxxx RF
  RNA_pol_Rpb1_1  97 ckecskllldeekkkllsklkkrekleelk...........................................................krlkai 132
                     c +c++l  d+ +  +++ l   + +++++                                                            r++a+
      CDO71740.1 109 CVNCGRLKADSVSD-ISFPLLVSHPTTQFSggslrfhgeprtrtafaldnrdvlppatgsarvfdrliaawtttdvrswldarhirdpkARMQAV 202
                     ***********954.44444444444444446666666666666666677777777777777777777777777788888888888888****** PP

                     HHHHCCS-BE-....................SSSSB-EEEEEETTEEEEEESSSST.........SCEEEE-HHHHHHHHHCSTHHHHHHTTSBT CS
                     xxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 133 eelckkinlce....................kCgavqpkleeegeklkaalkkske.........eekeklsaekvkkllkriededvevlgfks 198
                     ++ ck++++ce                    +Cga+qp++++eg kl  + k+ k+          +k+   +++v ++lk+i+d+d+ +lg++ 
      CDO71740.1 203 WNYCKSKTICEpdepkddnemgedepkkghgGCGATQPQIRKEGLKLFVQYKRGKDedeevkslqPDKRLFPPHEVYTVLKKISDSDLHLLGLSI 297
                     ****************************************************99998999**999899999************************ PP

                     TTB-GGGCCECCEEE--GGGS-BEESSSS.SEEBECCCCHHHHHHHHHHHHHHHHHSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 199 sgsrPewliltvlPVpPpeiRPsvqldgg.rrsedDlteklrdiikrNnrLkkaeeegapeliieeekelLQehvatlfdneisglkpatqkskr 292
                     +++rPew+iltvlPVpPp +RPs+++dgg  rsedDlt+kl diik+ ++++++e+egap+++i+e ++lLQ+hvat++dn+i+g+++a qks+r
      CDO71740.1 298 EYARPEWMILTVLPVPPPPVRPSIAVDGGtMRSEDDLTYKLGDIIKASTNVRRCEQEGAPAHVINEFEQLLQFHVATYMDNDIAGIPQALQKSGR 392
                     ***************************9989**************************************************************** PP

                     S--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 293 plkslsqrLkGKeGrfRgnL 312
                     p+k++++rLkGKeGr+RgnL
      CDO71740.1 393 PVKAIRARLKGKEGRLRGNL 412
                     *******************9 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.0  2.2e-106  4.4e-103       1     266 [.     878    1473 ..     878    1474 .. 0.99

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 2.2e-106
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+++efffh+m+gReGLiDtAvkTae+GY+qRrlvkaledv+v+yd+tvrns g+++qf+ygedg                           
      CDO71740.1  878 GLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDLIQFIYGEDGmdgafierqnietfalnnaqfehdyrv 970 
                      9******************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      CDO71740.1  971 dvtdpaggflpgvlqvglddsslelqakldeeyaqlcadrklmrewifprtdpaaprylpvnlqrivqnaiqifhidrrkpsdldpayivdsv 1063
                      ********************************************************************************************* PP

                      ..................................................................B--TT-BHHHHHHHHHHHHHHCCCSST CS
                      ..................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5   67 ..................................................................lvepGeavGiiaaQSiGePgTQltlnT 93  
                                                                                        l +pGe+ G++aaQSiGeP+TQ+tlnT
      CDO71740.1 1064 relsdrliivrgdgsltkeaqenatllfrmhlratlatrrvleryhlnreafewvlgeietkfnqsLAHPGEMCGTLAAQSIGEPATQMTLNT 1156
                      ********************************************************************************************* PP

                      TSSTCSSTSSSSSSHHHHHHHHTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE.................................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  RNA_pol_Rpb1_5   94 FHfaGvasknvtlGvprlkeilnvskniksksltvllvdeeakelekakkvkkaiek.................................... 150 
                      FH+aGv+sknvtlGvprlkei+nv++nik++sl+v+l +e ak++  ak+v++++                                      
      CDO71740.1 1157 FHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSVYLEPEIAKDKLLAKNVEQELAFtslrtvtaaveiwydpdpsstvieedqifvesffai 1249
                      *****************************************99999999999888778999******************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      CDO71740.1 1250 pdeeveqklhlmspwllrleldrvkmidrkltmhyvasriaesfktdlfviwsednaekliircrvlggidkdeedlgqveediflrqlentm 1342
                      ********************************************************************************************* PP

                      .......CBTTEEEEEEEEEEEEEEET.........EEEEEEECS--HHHHTTSTTTBETTTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHH CS
                      .......xxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 .......gikkikrilvkeaekgkeee.........kelvletegvnlsevlkveevvdageilsndiaeileilgieaarkallkeiqevyk 227 
                             g+++i+r+++ e++k   ++         ke+vlet+gvnl+ v+ +++ vd+++++sn+  ei+ +lgieaar+a+++e++ v++
      CDO71740.1 1343 lnsvslrGVPGIHRVFLLEHDKISITPagniearaeKEWVLETDGVNLKTVMCIDG-VDFKRTYSNSCVEIFDVLGIEAARAAIMRELRGVIE 1434
                      ********************999988899***************************.************************************ PP

                      HTTS---HHHHHHHHHHHTTTSS---SSTTCHCCSSSHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  228 vqgvsvndrHlelivdqmtkkgeivavnrsGinkaelsa 266 
                      ++g++vn+rHl+l++d+mt +g+++a++r+Gin+a+++a
      CDO71740.1 1435 FDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGA 1473
                      ***********************************9875 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.0   1.8e-77   3.6e-74       1     165 [.     414     577 ..     414     578 .. 0.98

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 1.8e-77
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTSEEEEE- CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgdiverhv 95 
                     Gkrvd+saR+vi++dpnl+ldevgvP+s+a++lt+pe+vt++ni+ l++lv+ngp+vyPga+yv r++g++ +l+++k +++  l++g+iverh+
      CDO71740.1 414 GKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNISYLQELVRNGPTVYPGARYVVRDTGERIDLRYNK-RADAFLQYGWIVERHL 507
                     9***************************************************************************95.59999*********** PP

                     -TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSB CS
  RNA_pol_Rpb1_2  96 kdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelll 165
                     kdgd+vl+NRqPsLhk+s+m+hrv++++++t+rlnlsvt +yNaDFDGDemn+h+pqsee+raE+++++ 
      CDO71740.1 508 KDGDYVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAW 577
                     *****************************************************************99975 PP

>> RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.0   2.3e-70   4.6e-67       1     191 []     944    1129 ..     944    1129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 2.3e-70
                      B-GGGEEEEE-TTSSS-HHHHHHHH---TTSSSSS--TTTSSSHH..HHTT-TTHHHHHHHHHHHHHHHHHHHHHTT-T..T---EEE..EES CS
  RNA_pol_Rpb1_6    1 ldgafiEkQkidllklsdekfekkYkldlddekkselkelleeevveeiredaelqelldeEyeqLkedRellrkeifpdeekdekvklqLPv 93  
                      +dgafiE+Q+i+++ l++++fe++Y++d++d+  + l+++l+     + +++ elq++ldeEy qL +dR+l+r+ ifp  + d  ++ +LPv
      CDO71740.1  944 MDGAFIERQNIETFALNNAQFEHDYRVDVTDPAGGFLPGVLQVGL--D-DSSLELQAKLDEEYAQLCADRKLMREWIFP--RTDPAAPRYLPV 1031
                      9*******************************************9..3.6899**************************..66788889**** PP

                      -HHHHHHHHHHHTT--SSS-B---HHHHHHHHHHHHTT--SS-SSSHHHHHHHHHTTTHHHHHHHHTS-HHHHHHTS---HHHHHHHHHHHHH CS
  RNA_pol_Rpb1_6   94 NikRlienaqkefkidkrkesdlspveviekvkelldklvvvrgddklskeaqenatllfkillrstLasKrvleeyrLskeaFdwllgeies 186 
                      N++R+++na ++f+id+rk+sdl+p++++++v+el d+l++vrgd +l+keaqenatllf+++lr tLa++rvle+y+L++eaF+w+lgeie+
      CDO71740.1 1032 NLQRIVQNAIQIFHIDRRKPSDLDPAYIVDSVRELSDRLIIVRGDGSLTKEAQENATLLFRMHLRATLATRRVLERYHLNREAFEWVLGEIET 1124
                      ********************************************************************************************* PP

                      HHHHH CS
  RNA_pol_Rpb1_6  187 rFkka 191 
                      +F+++
      CDO71740.1 1125 KFNQS 1129
                      ***97 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   1.8e-51   3.6e-48       1     157 []     581     740 ..     581     740 .. 0.95
   2 ?   -2.7   0.0       2.6   5.2e+03      61     119 ..     775     828 ..     748     830 .. 0.62

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 1.8e-51
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCSSSSSSSSSBESSSEBEEHHHHHHCCCHCCCCEEEE..SSSS..... CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsdsktvtlrpailkpkelwtgkqtfsrilpneinyerk..neek..... 88 
                     +i+spq +kPv+givQD+l+G++++T +d+f++++++q++l ++ ++d   + ++pai+kpk+lwtgkq++s+ +p+ in+ r      k     
      CDO71740.1 581 QIISPQANKPVMGIVQDTLCGIRKFTLRDTFLEWAQVQNILLWVPDWD--GIVPTPAIIKPKPLWTGKQILSMCIPRGINIFRSpdP--Ksnnpv 671
                     79******************************************9998..569******************************8541..356688 PP

                     .STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  89 .dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                      d+ ++i+ng ++ G+++kk+vg +sqg+l+hv+++e g+++t++++  lq++++++l ++gf+igigDt
      CDO71740.1 672 fDDGMMIENGDIVFGIVEKKTVG-ASQGGLVHVVFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGDT 740
                     9**********************.9********************************************7 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
                     SSEBEEHHHHHHCCCHCCCCEEEESSSSSTSEEECSSEEEES--SHHHHSSSSTTSHHH CS
  RNA_pol_Rpb1_3  61 pkelwtgkqtfsrilpneinyerkneekdgkvlikngelikGvidkkvvgkksqgslih 119
                     ++++ t++++f + + +e+n+ r +    +  + +++++    +++ vv+  s+gs i+
      CDO71740.1 775 AQPGMTIRESFEKKVERELNLARDT----SGQYAQKNLKEDNNVKQMVVA-GSKGSFIN 828
                     3558899999999999999999952....223444445545556666665.88888887 PP

>> RNA_pol_Rpb1_7  RNA polymerase Rpb1, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.7   2.5e-51     5e-48       1     135 []    1214    1349 ..    1214    1349 .. 0.94

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 2.5e-51
                      EEGGGTEEEEEEEB---TTS-SSGGGGHHHHTTS---------..----SBEEEEEE-SHHHHHTT--HHHHHHHHHHHHTTTEEEEE--TTS CS
  RNA_pol_Rpb1_7    1 ttLrkvtaateiyYDPdprntvieeDrefveeyyelpdedvek..srlspWlLRieLdrkkmtdkkltmeevaekikeefkndlkvifsddna 91  
                      t+Lr+vtaa+ei+YDPdp++tvieeD+ fve+++++pde+ve+  + +spWlLR+eLdr km+d+kltm+ va++i e+fk+dl+vi+s+dna
      CDO71740.1 1214 TSLRTVTAAVEIWYDPDPSSTVIEEDQIFVESFFAIPDEEVEQklHLMSPWLLRLELDRVKMIDRKLTMHYVASRIAESFKTDLFVIWSEDNA 1306
                      89***************************************955899********************************************** PP

                      SSEEEEEEE------------..--HHHHTTHHHHHHHSS-EEE CS
  RNA_pol_Rpb1_7   92 eklvlririvkeekekeeeqedkaeddkfLkklesnllssltLr 135 
                      ekl++r+r++   ++ +ee+  + e+d fL++le+++l+s++Lr
      CDO71740.1 1307 EKLIIRCRVLGGIDK-DEEDLGQVEEDIFLRQLENTMLNSVSLR 1349
                      **********96555.555556799*****************98 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   1.1e-38   2.2e-35       8     108 .]     771     871 ..     765     871 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 1.1e-38
                     TCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSSSESST CS
  RNA_pol_Rpb1_4   8 gkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkkidesp 102
                      +l  +pg++ +e+fe+k++  ln ard++g+ a+k+l+++N++++Mv +G+KGs+inisq++ c+Gqq+vegkrip+gf++rtlphf+k+d sp
      CDO71740.1 771 ARLPAQPGMTIRESFEKKVERELNLARDTSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSP 865
                     67899**********************************77****************************************************** PP

                     TTSSEE CS
  RNA_pol_Rpb1_4 103 esrGFv 108
                     e+rGFv
      CDO71740.1 866 EARGFV 871
                     *****8 PP

>> RNA_pol_Rpb1_R  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   9.0      0.21   4.3e+02       2      13 ..    1612    1623 ..    1602    1623 .. 0.81
   2 ?    4.5  12.4     0.026        52       1      12 [.    1618    1630 ..    1618    1631 .. 0.98
   3 ?    1.5   5.5      0.23   4.6e+02       2      14 .]    1650    1666 ..    1633    1666 .. 0.90
   4 !   14.8   2.7   1.4e-05     0.028       1      14 []    1667    1680 ..    1667    1680 .. 0.99
   5 !   13.8  11.5   2.9e-05     0.057       1      14 []    1681    1694 ..    1681    1694 .. 0.96
   6 !   13.1   9.3   4.9e-05     0.098       1      14 []    1695    1708 ..    1695    1708 .. 0.96
   7 !   13.8  11.5   2.9e-05     0.057       1      14 []    1709    1722 ..    1709    1722 .. 0.96
   8 !    6.3   4.8    0.0067        13       1      10 [.    1723    1732 ..    1723    1736 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.21
  RNA_pol_Rpb1_R    2 PTSPaySPtSPg 13  
                      P  P+ySP+SP 
      CDO71740.1 1612 PGGPGYSPSSPN 1623
                      3336*******5 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.026
  RNA_pol_Rpb1_R    1 SPTSP.aySPtSP 12  
                      SP SP aySPtSP
      CDO71740.1 1618 SPSSPnAYSPTSP 1630
                      9***********9 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.23
  RNA_pol_Rpb1_R    2 PTSP....aySPtSPgY 14  
                      +TSP    +++ tSP+Y
      CDO71740.1 1650 ATSPfydrSHGATSPTY 1666
                      4777************9 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 1.4e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSPa++ tSPgY
      CDO71740.1 1667 SPTSPALNLTSPGY 1680
                      9************9 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 2.9e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP ySPtSP++
      CDO71740.1 1681 SPTSPRYSPTSPSF 1694
                      9***********97 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 4.9e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP ySP+SP++
      CDO71740.1 1695 SPTSPRYSPQSPSF 1708
                      9***********97 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 2.9e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP ySPtSP++
      CDO71740.1 1709 SPTSPRYSPTSPSF 1722
                      9***********97 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.0067
  RNA_pol_Rpb1_R    1 SPTSPaySPt 10  
                      SP+SP ySP+
      CDO71740.1 1723 SPASPRYSPS 1732
                      9********7 PP

>> Herpes_BLLF1  Herpes virus major outer envelope glycoprotein (BLLF1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  24.5    0.0014       2.7     484     601 ..    1601    1721 ..    1567    1744 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
  Herpes_BLLF1  484 gaspvtp.spsprdngteskapdmtsptsavttptpnatsptpavttptpnatsp....tlgktsptsavttptpnatsptpavttptpnatipt 573 
                    g sp+     sp   g    +p+  spts   + +p + + +p  t+  p atsp    + g tspt + t+p+ n tsp  + t+p    t p+
    CDO71740.1 1601 GMSPMGAgGMSPGGPGYSPSSPNAYSPTSPYLAQSPFTGATSPMGTS--PYATSPfydrSHGATSPTYSPTSPALNLTSPGYSPTSPRYSPTSPS 1693
                    55565431457777777777888888888776655554444444443..3445542222456677777777777777777777777766666666 PP

  Herpes_BLLF1  574 lgktsptsavttptpnatsptvgetspq 601 
                    +  tsp  +  +p+   tsp    tsp 
    CDO71740.1 1694 FSPTSPRYSPQSPSFSPTSPRYSPTSPS 1721
                    6666666666666666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 10983.87
//
Query:       CDO71741.1  [L=693]
Description: hypothetical protein BN946_scf184920.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-46  155.6   0.5    1.3e-44  151.4   0.0    2.3  2  VHS        VHS domain
    1.1e-18   67.1   6.9    1.8e-18   66.5   6.9    1.3  1  FYVE       FYVE zinc finger
    6.9e-06   26.3   4.8    1.3e-05   25.3   4.8    1.4  1  FYVE_2     FYVE-type zinc finger
    5.8e-05   22.7  15.3     0.0028   17.5   2.8    3.6  3  UIM        Ubiquitin interaction motif
    0.00029   21.1   0.5     0.0011   19.3   0.1    2.2  2  GAT        GAT domain
  ------ inclusion threshold ------
       0.64   10.4   9.7       0.23   11.8   6.9    1.7  2  zf-RING_2  Ring finger domain
        4.4    7.6   9.5       0.77   10.0   5.2    1.9  2  zf-B_box   B-box zinc finger


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   5.2e-48   1.3e-44       5     141 .]      13     149 ..      11     149 .. 0.96
   2 ?    1.8   0.4     0.077     2e+02      72      86 ..     196     210 ..     192     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 5.2e-48
                 HHHHHHHHHHT-TT-SS-..-HHHHHHHHHHHHCSTCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTC CS
         VHS   5 sslekliekATdeslree..dlslileicDlinekeagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekkns 101
                 s+l+ +i+kAT+e l+++  d++l+leicD+i++k++ pk+a+r++k+++n+knp+v+llaL+l+d+++kN+G +f++eias+ef+++lv++++  + +
  CDO71741.1  13 SQLDDAIDKATSELLPSGseDIALNLEICDQIRSKSVPPKDAMRALKRRLNHKNPNVQLLALSLTDVCIKNGGDPFLNEIASREFMDNLVSILKMPSLN 111
                 57999**********98777***********************************************************************88888888 PP

                 HCS.HHHHHHHHHHHHHHHTTT-TTGHHHHHHHHHHHHTT CS
         VHS 102 klakvkkkvlelleeWadafknkpelkkisdvykllkrkg 141
                 ++  vk+k+l++++ Wa af+ kp l+++ +vyk l+r+g
  CDO71741.1 112 HD--VKNKMLRYIQDWAIAFEGKPTLSYVGEVYKTLQREG 149
                 86..********************************9987 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.077
                 HHSHHHHHHHHTSHH CS
         VHS  72 kNcGskfhleiaske 86 
                 +NcG+ + ++++s+ 
  CDO71741.1 196 RNCGKVVCQQCSSRS 210
                 8***********986 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   6.9   6.9e-22   1.8e-18       9      67 ..     176     233 ..     171     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 6.9e-22
                 -SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHHH CS
        FYVE   9 vkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClaels 67 
                 ++ C iC+ +F++++r+hhCr+CGkvvC++Css +++l+ ++   ++vrvC+ C+++l+
  CDO71741.1 176 SELCLICRDPFTFTNRKHHCRNCGKVVCQQCSSRSLPLP-HYGIAQEVRVCDPCYRTLT 233
                 578*********************************888.99*************9976 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   4.8   5.2e-09   1.3e-05      52     105 ..     174     233 ..     164     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.2e-09
      FYVE_2  52 lgethCilCleefkllvnskrqCldCklnvCkkCsve.......nkkekvwlCkiCseaRe 105
                 + ++ C+ C ++f++ +n k++C +C + vC++Cs+        +  ++v +C++C ++ +
  CDO71741.1 174 IDSELCLICRDPFTF-TNRKHHCRNCGKVVCQQCSSRslplphyGIAQEVRVCDPCYRTLT 233
                 56789*********9.58899**************999999988889999******87644 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.8   1.1e-06    0.0028       3      16 ..     258     271 ..     257     271 .. 0.96
   2 !   12.2   0.7     5e-05      0.13       1      17 []     311     327 ..     311     327 .. 0.93
   3 ?   -0.2   0.2      0.48   1.2e+03      10      16 ..     422     428 ..     422     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
         UIM   3 dedLqrAlalSlqE 16 
                 d+dLqrA++lSl+E
  CDO71741.1 258 DADLQRAIQLSLEE 271
                 9************9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5e-05
         UIM   1 dEdedLqrAlalSlqEa 17 
                 ++d dL++A++ Sl Ea
  CDO71741.1 311 EDDPDLRAAIEASLREA 327
                 69************995 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.48
         UIM  10 lalSlqE 16 
                 la+Sl++
  CDO71741.1 422 LAMSLSD 428
                 89**986 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   3.9e+03      20      46 ..      49      75 ..      38      79 .. 0.78
   2 !   19.3   0.1   4.2e-07    0.0011       7      75 ..     387     454 ..     382     456 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
         GAT 20 llenellkeLyetckamqpriqkliee 46
                +  ++++  L +++    p++q l+ +
  CDO71741.1 49 VPPKDAMRALKRRLNHKNPNVQLLALS 75
                555899999999999999999988765 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.2e-07
         GAT   7 LsemLsstepd..eellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlk 75 
                 +++ +++++++  ++++   +++eLy++  a++p++   +++t+ +e+    l+ ++++L+++++ Y++l+
  CDO71741.1 387 FNQTVEQLQAQggRDISRYPAVTELYDKASALRPKLAMSLSDTTRKEE---VLIDMHEKLSEAVKLYDKLL 454
                 566777776455788999999***************999999988886...9****************986 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   6.9   9.1e-05      0.23       3      32 ..     179     209 ..     177     215 .. 0.85
   2 ?   -3.0   0.0       3.9     1e+04      25      37 ..     224     236 ..     219     238 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.1e-05
   zf-RING_2   3 CpICleelssadsvlll.pCgHvfhreCler 32 
                 C IC ++++ +++ + +  Cg+v +++C +r
  CDO71741.1 179 CLICRDPFTFTNRKHHCrNCGKVVCQQCSSR 209
                 ********88888776658*********987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.9
   zf-RING_2  25 fhreClerwlrss 37 
                  +  C ++++r++
  CDO71741.1 224 VCDPCYRTLTRKN 236
                 4666666655554 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.2    0.0003      0.77      15      31 ..     192     208 ..     177     215 .. 0.84
   2 ?   -1.9   0.1       1.6     4e+03      24      35 ..     223     240 ..     221     251 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
    zf-B_box  15 tlfCedCqqplCeeCst 31 
                 + +C++C++ +C++Cs+
  CDO71741.1 192 KHHCRNCGKVVCQQCSS 208
                 678************54 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
    zf-B_box  24 plCeeC......stgeHr 35 
                  +C+ C       +++Hr
  CDO71741.1 223 RVCDPCyrtltrKNKTHR 240
                 688888877666666776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 4382.73
//
Query:       CDO71742.1  [L=475]
Description: hypothetical protein BN946_scf184920.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-96  324.3   0.0    1.5e-96  324.1   0.0    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.1   0.0  8.4e-101   1.5e-96      46     450 ..       2     454 ..       1     455 [. 0.92

  Alignments for each domain:
  == domain 1  score: 324.1 bits;  conditional E-value: 8.4e-101
                 .TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSS CS
     Amidase  46 gpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglv 144
                 gpLhG+Pis+KD++++kg++t +G+  + +++a++D+++ve L + Gav++++Tn+++++m+ +t n vfg+t NP+++s t+GGSSGG++A+vA +++
  CDO71742.1   2 GPLHGLPISLKDQFCIKGLETIMGYAGWIGRVADRDSVLVEILYECGAVPFVRTNVPQTLMWPETYNHVFGRTTNPYNRSMTCGGSSGGEGALVALRGS 100
                 8************************************************************************************************** PP

                 SCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEEESSHHHHHHHHHHHBS--TT-TTS----...HHHHHHHHCTT---T CS
     Amidase 145 plaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGplarsvedlalllrvilgedpkdstssvip...eesedlaeelkkslk 236
                 pl++GtD+GGS+RiP++fcgl+Gl+P+y+r++++g v    ++es+ +v Gp++ s+  ++++ ++++   p++ +  ++    +e e    e + +  
  CDO71742.1 101 PLGVGTDIGGSVRIPSAFCGLYGLRPSYNRLPYYGAVnsmeGQESISSVLGPMTNSLAGVRAFTKAVIDAKPWRKDPVCLRkewNEREYALGEHGGRGG 199
                 *************************************************************************99988877998887788888888999 PP

                 T-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-..HHH CS
     Amidase 237 glriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaeassnlarylgvryerlsetkvlsellpksraellg..eev 333
                 ++  +v+++ gv++++p+v+ra+e +++aLe+aGh+v+++e  +l e++ + ++i +a+ +  + ++      +ls+   l+++ p++ a+++   e +
  CDO71742.1 200 KMCFAVMWDNGVVKPHPPVKRAMELTKAALEAAGHTVIDWENHRLLEIYTVGVRIFAADNALDMLKD-----CELSGEPLLKTMSPATDAHEFAldEPM 293
                 9*******************************************************99998554433.....467899999999999998765322556 PP

                 HHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..........BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--E CS
     Amidase 334 krrielgnyalsaeasskyylkaqkvrrllrrefakafee..........lDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpa 422
                 ++ i    + lsa      +++  k++r+lr++   ++e+          +D+++sP+a+++  ++g  +++   yt   n+ld+ta v+p+++a++  
  CDO71742.1 294 QVAIVGEPKHLSAYE----LWELHKEKRALRKSHLDHWEAtvsktgtgrpVDAIISPVAAYASCPHGCNSNYL--YTGFCNFLDYTAHVFPATFADKAL 386
                 666666666666654....8999999999*****************************************987..**********************99 PP

                 EE..EECCCCT.......................................TECEEEEEEESTT-HHHH CS
     Amidase 423 ls..vpagksed......................................glPvGvqvigkafqeetl 450
                 +    p +++++                                      g+PvG+q+ig++ +ee +
  CDO71742.1 387 DGraPPHEFYNRedeavyklceplsrvdcsevmgmltgcfryvddpelwhGMPVGLQLIGRTHEEEGV 454
                 9877566666445799***********************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3388.72
//
Query:       CDO71743.1  [L=96]
Description: hypothetical protein BN946_scf184920.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 652.10
//
Query:       CDO71744.1  [L=623]
Description: hypothetical protein BN946_scf184920.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-104  349.5   0.0   4.1e-102  342.4   0.0    2.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.4   0.0  2.3e-106  4.1e-102       1     450 [.      76     602 ..      76     603 .. 0.92

  Alignments for each domain:
  == domain 1  score: 342.4 bits;  conditional E-value: 2.3e-106
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgk 98 
                 e++ af+kr+  +++ +n+l ++fie ala+A+++d++ + +g++ gpLhG+Pis+KD++++kg++t +G+  + +++a++D+++ve L + Gav++++
  CDO71744.1  76 EVTTAFYKRAIIAQQLTNCLTEIFIERALARAKEVDDYLQaHGEPMGPLHGLPISLKDQFCIKGLETIMGYAGWIGRVADRDSVLVEILYECGAVPFVR 174
                 79************************************************************************************************* PP

                 E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEE CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGpl 193
                 Tn+++++m+ +t n vfg+t NP+++  tpGGSSGG++A+vA +++pl++GtD+GGSiRiP++fcgl+Gl+P+y+r+++ g v    ++es+ +v Gp+
  CDO71744.1 175 TNVPQTLMWGETHNHVFGRTTNPYNRYMTPGGSSGGEGALVALRGSPLGVGTDIGGSIRIPSAFCGLYGLRPSYNRLPYCGAVnsqeGQESISSVLGPM 273
                 *************************************************************************************************** PP

                 ESSHHHHHHHHHHHBS--TT-TTS----...HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHH CS
     Amidase 194 arsvedlalllrvilgedpkdstssvip...eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyy 289
                 + s+  ++++ ++++   p++ +  ++    +e e    e + +  ++  +v+++ gv++++p+v+ra+e +++aLe+aGh+v+ +e  ++ e++ +  
  CDO71744.1 274 TNSLAGVRAFTKAVIDAKPWRKDPVCVRkewSEREYALGEHGGQGGKMCFAVMWDNGVVKPHPPVKRAMELTKAALEAAGHTVINWENHRHLEIYTVGE 372
                 ********************888887668877777777777888899**************************************************** PP

                 HHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHH..CCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..........BSE CS
     Amidase 290 lilvaeassnlarylgvryerlsetkvlsellpksra..ellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..........lDv 376
                 +i +a+ +  l+++ +      s+   ++++ p + a  + l e +++ i    + lsa      +++  k++r+lr++   ++e+          +D+
  CDO71744.1 373 RIFAADDALDLRKDCEL-----SGEPLMQTMSPTTDAheHALDEPMQVTIVGERKHLSAYE----LWELHKEKRALRKSHLDHWEAtvsrtgtgrpVDA 462
                 *******9888866554.....566666666665554337888999999999999999886....8899999999**********99************ PP

                 EEEESSSSS--BCCCCCHHH..........................CSHHHHHGCCTTT...HHHHHTT--EEE..EECCCCT................ CS
     Amidase 377 llsPtaptpaprlgekdkti..........................dsytvlynlldftavvvpvnlaglpals..vpagksed............... 432
                 ++sP+a+++  ++g  +++                             yt+  n+ld+ta v+p+++a +  +    p +++++               
  CDO71744.1 463 IISPVAAYASCPHGCNSYVPppslfrclqrdaerhgraragrgrrdYFYTSFCNFLDYTAHVFPATFAHKSLDGraPPHEFYNRedeavyklceplfpv 561
                 **************99876688899999999999999888888875568888999999999999999988888766555555446799*********** PP

                 .......................TECEEEEEEESTT-HHHH CS
     Amidase 433 .......................glPvGvqvigkafqeetl 450
                                        g+PvG+q+ig++ +ee +
  CDO71744.1 562 vcsevmgmltgcfryvddpelwhGMPVGLQLIGRTHEEEGV 602
                 ***********************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4163.29
//
Query:       CDO71745.1  [L=909]
Description: hypothetical protein BN946_scf184920.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.087   13.1   0.1       0.83   10.0   0.0    2.6  2  PDZ_5           PDZ domain
       0.73    9.3   5.8        8.6    5.9   0.0    2.8  2  Sirohm_synth_M  Sirohaem biosynthesis protein central


Domain annotation for each model (and alignments):
>> PDZ_5  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.34     3e+03      22      48 ..     442     468 ..     427     471 .. 0.67
   2 ?   10.0   0.0   9.3e-05      0.83      25      56 ..     838     868 ..     822     871 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.34
       PDZ_5  22 sskakvkkkskvkFstdPikvystfsv 48 
                 ++k +   +sk++ std i   st s 
  CDO71745.1 442 KKKSRSLFNSKLNRSTDNISLSSTMSS 468
                 333344457899999999999999985 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 9.3e-05
       PDZ_5  25 akvkkkskvkFstdPikvystfsvedYDRRne 56 
                  +++ +++++F ++ + vy tf  + YDRR e
  CDO71745.1 838 SQTAPTKRLAFAAN-LSVYDTFPATVYDRRSE 868
                 55666778888765.9**************98 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   4.0     0.015   1.3e+02       9      18 ..     767     776 ..     767     778 .. 0.88
   2 ?    5.9   0.0   0.00096       8.6      15      26 ..     877     888 ..     877     890 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.015
  Sirohm_synth_M   9 STnGksPrLA 18 
                     S+nG+sP+ +
      CDO71745.1 767 SSNGNSPKTS 776
                     9******976 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00096
  Sirohm_synth_M  15 PrLAaliRreie 26 
                     P+LA++i++e+ 
      CDO71745.1 877 PALAQRIKEELN 888
                     9*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1296  (0.0722851); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.49
# Mc/sec: 5547.84
//
Query:       CDO71746.1  [L=582]
Description: hypothetical protein BN946_scf184920.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-48  165.5   0.0    4.1e-27   95.5   0.0    2.2  2  Pro_dh     Proline dehydrogenase
     0.0078   16.3   1.0        0.2   11.8   0.0    2.7  3  Resolvase  Resolvase, N terminal domain


Domain annotation for each model (and alignments):
>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   4.5e-31   4.1e-27      31     173 ..     186     395 ..     140     405 .. 0.83
   2 !   67.7   0.0   1.3e-22   1.2e-18     184     292 ..     427     561 ..     422     564 .. 0.81

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 4.5e-31
                 HHHHHHHHHHHHHHHHHHCCS-T..TCC-S...EEE-GGG........................T......................T-SGGGHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxx...xxxxxxx........................x......................xxxxxxxxxxxx RF
      Pro_dh  31 dryleayleaiksiekaskalkv..leapg...vsvklsa........................p......................rletaeeeevme 78 
                 ++ ++++l++i+ ++++++++++  +   +   v++klsa                        p                       l t  + e+++
  CDO71746.1 186 KQVVQETLHCIDVAADFEDKRTHgrN--GRrtwVAIKLSAmvpdaeilrkfskylvdtrpgtrhPvafpgcplpsdldvlsarqvtgDLLTSIDLEALR 282
                 45588899999999888886555432..33568*********9988888887777776666555166666667778888888899999999999999** PP

                 HHHHHHHHHHHHHHHTT-EEEE----GGGHH....HHHHHHHHHHHSCCTTT---...............EEEEEETTBTTHHHHHHHHHHHHHHTTS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  79 elverlrtlakeakelgvrlliDaEeaklqe....ltlelfrklnkepelkdwev...............vgntyQaYlkdalevlqkllelAeregfr 158
                 el e l +++++ake+gvrl++DaE +++ +     tl+++r +nk p++ +w +               v+ tyQaYl++++e+l + ++ +++eg++
  CDO71746.1 283 ELREDLVSICNRAKERGVRLIFDAEYSWYEPaidaFTLDMMRTFNKLPKK-SWFGsfikggqqaqelqplVYATYQAYLRRTPEYLGQSIAASRHEGYS 380
                 *********************************************97777.676679999999************************************ PP

                 EEEEEE--S-HHHHH CS
                 xxxxxxxxxxxxxxx RF
      Pro_dh 159 lgvkLVrGAYldsEr 173
                 lgvkLVrGAY  +E 
  CDO71746.1 381 LGVKLVRGAYHPHEL 395
                 ***********9996 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 1.3e-22
                 SB-SSHHHHHHHHHHHHHHHH............HTTTTEEEEEE-S-HHHHHHHHHHHHHT..T--GGGEEEEEETTSSHHHHHHH...HHTTS-.... CS
                 xxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx.... RF
      Pro_dh 184 pifdtkeeTDanYdavaelll............enrdeiypavAsHNaesvakalalaeelgqekeksevefqqLlGMadnlsfal...akagyn.... 263
                 p++++k+eTD+ Y+a+++ ll            e+  +i++ +++HN +sv+ +++ + ++g   ++++  + + +  a+ ++      + ag +    
  CDO71746.1 427 PVWTSKAETDERYNACVKVLLeavqedvrtrgsEAPPAIGVLFGTHNWDSVNLIIEELTRRGLATADERGRISVGEAVAERVTVGQlygCGAGGPsrrp 525
                 9********************988888877777777799999*************99999977777777777766777777766555663333223445 PP

                 .......EEEEEEECEHHHHHHHHHHHHHHHH-TT- CS
                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 264 .......vrkYlPvGpveevlpYLvRRleENtanss 292
                        v+kY+P+G++ e++pYL RR+ EN+++++
  CDO71746.1 526 rprsvpfVIKYIPYGHLSEIMPYLGRRAIENKSVLG 561
                 6677779*************************9875 PP

>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.025   2.3e+02       8      50 ..     176     214 ..     169     226 .. 0.75
   2 !   11.8   0.0   2.2e-05       0.2      63     124 ..     268     329 ..     260     334 .. 0.87
   3 ?   -2.2   0.0      0.45     4e+03     129     145 ..     481     497 ..     479     498 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.025
                 S-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT- CS
   Resolvase   8 SteeqddslerQkealrayakenglkivkefeDkgvSGakleR 50 
                 St+ ++  ++  k+ +++   +   +++++feDk   G++ +R
  CDO71746.1 176 STSRDE--IAVHKQVVQETLHCI--DVAADFEDKRTHGRNGRR 214
                 444444..777777777777777..7888*********99766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.2e-05
                 -EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEESS..SS----H.HHHHHHHHHHHHHH CS
   Resolvase  63 gkgdvlvvekldRLaRsvrdlltlleelrekgvslvsldegidtstpm.grlllqilaalaef 124
                   gd l+  +l  L     dl+++ +  +e+gv+l++ +e + + +p+ + ++l+++ +++++
  CDO71746.1 268 VTGDLLTSIDLEALRELREDLVSICNRAKERGVRLIFDAE-YSWYEPAiDAFTLDMMRTFNKL 329
                 3568888899999988899********************9.*******9********999876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.45
                 HHCT-TTHHHHHHHHHH CS
   Resolvase 129 irertkeglaaakakGk 145
                 i e t++gla+a ++G+
  CDO71746.1 481 IEELTRRGLATADERGR 497
                 67889********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4211.00
//
Query:       CDO71747.1  [L=503]
Description: hypothetical protein BN946_scf184920.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-37  127.9   0.0    3.2e-21   76.1   0.0    2.4  2  Pro_dh    Proline dehydrogenase


Domain annotation for each model (and alignments):
>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   3.1e-17   5.5e-13     110     175 ..     227     309 ..     183     324 .. 0.83
   2 !   76.1   0.0   1.8e-25   3.2e-21     184     291 ..     340     476 ..     332     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 3.1e-17
                 HHHHHHHHHHH..SCCTTT---...............EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHH CS
                 xxxxxxxxxxx..xxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 110 ltlelfrklnk..epelkdwev...............vgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkr 175
                  t++++r++nk   p +++w +               ++nt+Q Yl++++e+l + ++ A++ g+ lgvkLVrGAY  +E++ 
  CDO71747.1 227 FTVDMMREYNKlpSPPKRSWFSsrkseeaaavsiqplIYNTFQGYLRRTPEYLAQSIADARAGGYALGVKLVRGAYHPHEIEV 309
                 7999999999977666766666899999999999999*******************************************985 PP

  == domain 2  score: 76.1 bits;  conditional E-value: 1.8e-25
                 SB-SSHHHHHHHHHHHHHHHH.............HTTTTEEEE......EE-S-HHHHHHHHHHHHHT..............T--GGGEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx......xxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxx RF
      Pro_dh 184 pifdtkeeTDanYdavaelll.............enrdeiypa......vAsHNaesvakalalaeel............gqekeksevefqqLlGMad 251
                 p++ +k++TD +Y++ +++l+             +      p+      +++HN +s + ++  + ++            + +++ ++v++ qL+GM+d
  CDO71747.1 340 PVWLRKDDTDSCYNSSVQMLIrliredvdrctkgA------PGptigalFGTHNWDSANLIVDELVKQglatpdpsggvwISDAAMQRVAVSQLYGMSD 432
                 9********************98886664333222......22445555***********997665554766667676666788899************ PP

                 HHHHHHHHTTS-....EEEEEEECEHHHHHHHHHHHHHHHH-TT CS
                 xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 252 nlsfalakagyn....vrkYlPvGpveevlpYLvRRleENtans 291
                 +l++++ ++ +     v+kYlP+G++ ev+pYL RR+ EN++++
  CDO71747.1 433 ALTDHMVDRTRCaspfVLKYLPYGSLAEVMPYLSRRAIENKSVL 476
                 ******4444333567*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3713.36
//
Query:       CDO71748.1  [L=1208]
Description: hypothetical protein BN946_scf184920.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-60  202.2   1.7    9.4e-57  191.4   0.0    3.8  4  TIP120           TATA-binding protein interacting (TIP20)
    1.6e-21   74.5  20.7       0.11   12.8   0.0   14.8 15  HEAT             HEAT repeat
    9.2e-15   54.8  14.3      0.021   15.2   0.0    8.8  8  HEAT_2           HEAT repeats
    5.8e-13   48.3   5.4     0.0012   17.5   0.0    4.8  4  Adaptin_N        Adaptin N terminal region
    5.5e-11   42.8   3.5     0.0068   16.5   0.0    7.1  7  Cnd1             non-SMC mitotic condensation complex subunit
    9.7e-11   41.9  18.2       0.76   10.4   0.0   11.4 12  HEAT_EZ          HEAT-like repeat
    3.7e-10   39.8   6.8    1.5e-06   28.0   0.0    6.0  6  CLASP_N          CLASP N terminal
    1.4e-07   31.3   1.2        1.1    9.2   0.0    5.9  5  UME              UME (NUC010) domain
    2.7e-07   30.4   2.7      0.031   13.9   0.0    5.5  5  MMS19_N          Dos2-interacting transcription regulator of 
    3.5e-05   24.3   1.7          3    8.5   0.2    6.6  8  Vac14_Fab1_bd    Vacuolar 14 Fab1-binding region
    0.00019   21.6   6.9       0.18   12.0   0.1    5.6  5  RTP1_C1          Required for nuclear transport of RNA pol II
    0.00048   20.6   5.0       0.32   11.4   0.0    4.0  4  Telomere_reg-2   Telomere length regulation protein
  ------ inclusion threshold ------
      0.012   15.7   2.9        4.4    7.4   0.1    5.4  6  V-ATPase_H_C     V-ATPase subunit H
       0.04   13.0  30.9       0.75    8.8   2.5    6.0  5  MMS19_C          RNAPII transcription regulator C-terminal
      0.041   14.1   2.8      0.079   13.2   2.8    1.4  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
      0.054   12.3   1.8        7.1    5.3   0.3    3.3  3  API5             Apoptosis inhibitory protein 5 (API5)
       0.06   13.5   5.9         62    3.6   0.0    5.7  6  ParcG            Parkin co-regulated protein
       0.15   11.5   9.1        5.5    6.4   0.0    5.1  5  Tti2             Tti2 family
       0.29   10.9   3.3        0.4   10.5   0.2    2.5  3  Sec5             Exocyst complex component Sec5
        4.5    6.5   9.6        7.3    5.8   9.6    1.2  1  NOA36            NOA36 protein


Domain annotation for each model (and alignments):
>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         2   1.8e+03      65     106 ..      49      92 ..      40     104 .. 0.69
   2 !    7.2   0.0    0.0044         4      52     108 ..     240     299 ..     227     309 .. 0.80
   3 ?   -3.2   0.0       7.1   6.4e+03      87     119 ..     458     490 ..     456     493 .. 0.88
   4 !  191.4   0.0   1.1e-59   9.4e-57       1     165 [.    1028    1190 ..    1028    1194 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2
      TIP120  65 elldrvlaGlsDe.hdikllcnlmlsklvalap.eevlerldel 106
                 ++l +vla ++D+  ++k  +  +l +l+++   +++   +d+l
  CDO71748.1  49 KVLRQVLALVEDKiSEVKNQAVKCLGQLIKIIReTQMEYVVDKL 92 
                 56677777788888888888888888888754303344445555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0044
      TIP120  52 tlletaldrld..lselldr.vlaGlsDehdikllcnlmlsklvalapeevlerldelve 108
                 ++  ++ +++   ls++++r + +  +D+++ +  c++ l  lv  +p+e+++ l+++++
  CDO71748.1 240 AVARHSPNQIApaLSDIASRiIKDSQRDDEELRESCLQALEALVLKCPSEITSFLSAIIR 299
                 55555555554558999***6777889****************************99986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.1
      TIP120  87 mlsklvalapeevlerldelvealrktlskklk 119
                 +l kl+++ p  ++++  ++v++ +++ls+ ++
  CDO71748.1 458 LLHKLLTVLPGCLASQSAQIVATSKAILSTSPR 490
                 68999999999999999**********999876 PP

  == domain 4  score: 191.4 bits;  conditional E-value: 1.1e-59
      TIP120    1 lilpllsqllplvyketkvkkelireVqmGPFkhkvDdGLelRKaaYetlytlletaldrldlselldrvlaGlsDe.hdikllcnlmlsklvalap 96  
                  li+++l++llp +yket+v+++lir+VqmGP++hkvDdGLe+RK+aYetlytll+t+l+rldl+e+l +v+ Gl D+ +++k++c++ml +l+++ap
  CDO71748.1 1028 LIRDHLPSLLPSLYKETVVNPDLIRTVQMGPWTHKVDDGLEARKTAYETLYTLLDTCLSRLDLHEFLGHVAVGLADDsDEVKVICHMMLFRLAQVAP 1124
                  79**************************************************************************999****************** PP

      TIP120   97 eevlerldelvealrktls.kklkekavkqelEkqeelkrsvlrvvaalnsklesaevakssskwtefve 165 
                  +++++rld+l+ +l+k ++   +++++vkq++E+++el+rs+lr+vaal sk+++     +s+k+++fv 
  CDO71748.1 1125 TATAQRLDDLTPPLEKSMKgPAVTKDTVKQDIERAAELQRSTLRAVAAL-SKISQPG---ASPKFDAFVA 1190
                  ******************9789***************************.9998876...4588888875 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   0.00014      0.12       2      30 ..      51      79 ..      50      80 .. 0.91
   2 ?   -1.8   0.0       5.9   5.3e+03      12      29 ..      99     116 ..      89     118 .. 0.84
   3 !   12.8   0.0   0.00012      0.11       3      30 ..     177     204 ..     176     205 .. 0.90
   4 ?    3.3   0.0      0.14   1.3e+02      12      30 ..     267     285 ..     253     286 .. 0.84
   5 ?    2.4   0.0      0.27   2.4e+02      11      27 ..     342     358 ..     340     361 .. 0.89
   6 ?    1.5   0.0      0.52   4.6e+02       4      27 ..     365     388 ..     363     391 .. 0.77
   7 ?    2.2   0.0      0.32   2.9e+02       2      28 ..     524     550 ..     523     553 .. 0.91
   8 ?    4.8   0.0     0.047        42       9      27 ..     574     593 ..     568     595 .. 0.85
   9 ?    2.5   0.1      0.25   2.3e+02       5      31 .]     786     812 ..     783     812 .. 0.73
  10 !    7.0   0.0    0.0092       8.2       4      28 ..     848     872 ..     845     874 .. 0.84
  11 ?    1.9   0.0      0.41   3.7e+02       1      31 []     879     908 ..     879     908 .. 0.87
  12 ?    3.3   0.0      0.14   1.2e+02       5      28 ..     924     947 ..     921     950 .. 0.80
  13 !    8.4   0.1    0.0033         3       2      24 ..     955     977 ..     955     978 .. 0.94
  14 !    8.8   0.2    0.0025       2.2       5      26 ..     999    1020 ..     996    1024 .. 0.89
  15 ?   -2.1   0.0       7.9     7e+03      17      31 .]    1070    1084 ..    1068    1084 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
                HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  2 lPlllkllsDpspeVReaAakaLgalaev 30
                l  +l l +D+ +eV   A+k+Lg+l+++
  CDO71748.1 51 LRQVLALVEDKISEVKNQAVKCLGQLIKI 79
                77899999******************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.9
                 SSHHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgalae 29 
                 ++ e R+ A +aL ++ +
  CDO71748.1  99 KDEELRDIAGLALKTITS 116
                 68899********99986 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00012
                 HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalaev 30 
                  +l  lls+p p VR+ A+ +L++++++
  CDO71748.1 177 QVLTPLLSHPRPAVRKRAIATLAQFLPY 204
                 578899******************9875 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.14
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                 ++ e Re++++aL al+ +
  CDO71748.1 267 DDEELRESCLQALEALVLK 285
                 57889*********99865 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.27
                 -SSHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgal 27 
                 D+s ++R++A k L a+
  CDO71748.1 342 DTSYKIRRSATKLLSAV 358
                 9************9986 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.52
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 ll +l +D +  VR  +  a g l
  CDO71748.1 365 LLTTLFNDREETVRLEVWSAYGVL 388
                 455666********9998887766 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.32
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                  P+ll++l  ++p++ + A++++ al+
  CDO71748.1 524 TPFLLQALAEKHPRIASEAFRNFSALL 550
                 59*********************9997 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.047
                 H.T-SSHHHHHHHHHHHHHH CS
        HEAT   9 l.sDpspeVReaAakaLgal 27 
                   +D+++eVR  A +++g+l
  CDO71748.1 574 SnHDTDAEVRGCAEECIGDL 593
                 4489**************98 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.25
                 HHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   5 llkllsDpspeVReaAakaLgalaevl 31 
                 + k++      +R+ Aa +++++a++l
  CDO71748.1 786 VAKCIGQVVKAQRAVAAGTIAEFAKHL 812
                 555555555678999******999985 PP

  == domain 10  score: 7.0 bits;  conditional E-value: 0.0092
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 + ++  +++  eVR aAa a g++a
  CDO71748.1 848 HAIERFTSEQEEVRTAAAFAAGNIA 872
                 55777899************99987 PP

  == domain 11  score: 1.9 bits;  conditional E-value: 0.41
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +lP+++k+   ++   R  A+ aL +++ ++
  CDO71748.1 879 FLPAIVKMV-ETDQTKRLLALHALKEVVTHC 908
                 699999985.888888********9999887 PP

  == domain 12  score: 3.3 bits;  conditional E-value: 0.14
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l ++ + ++   R  Aa +Lg+l 
  CDO71748.1 924 LFENSENQEETTRNVAAACLGKLT 947
                 455567788889*********997 PP

  == domain 13  score: 8.4 bits;  conditional E-value: 0.0033
                 HHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaL 24 
                 lP l+  +sDp+p  R++++ a+
  CDO71748.1 955 LPQLQARISDPNPATRATVLSAI 977
                 89*****************9997 PP

  == domain 14  score: 8.8 bits;  conditional E-value: 0.0025
                  HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLga 26  
                  +l+llsD++  VR+ A+ aL  
  CDO71748.1  999 FLSLLSDSDLTVRRLALSALNS 1020
                  5899***************975 PP

  == domain 15  score: -2.1 bits;  conditional E-value: 7.9
                  HHHHHHHHHHHHHCS CS
        HEAT   17 ReaAakaLgalaevl 31  
                  R++A ++L +l+  +
  CDO71748.1 1070 RKTAYETLYTLLDTC 1084
                  99*******998765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0041       3.7      31      87 ..      49     111 ..       9     128 .. 0.63
   2 !   15.2   0.0   2.4e-05     0.021       2      58 ..     134     201 ..     133     217 .. 0.78
   3 ?    1.9   0.0      0.32   2.9e+02      11      54 ..     342     384 ..     331     398 .. 0.68
   4 ?    1.8   0.0      0.36   3.2e+02      32      85 ..     523     588 ..     515     591 .. 0.62
   5 !    8.2   0.0    0.0035       3.1      32      84 ..     845     898 ..     829     903 .. 0.73
   6 !   14.5   0.0     4e-05     0.036      13      56 ..     932     978 ..     920     999 .. 0.72
   7 !   15.0   0.4   2.8e-05     0.025       7      60 ..     961    1023 ..     958    1047 .. 0.73
   8 ?   -2.7   0.0       8.9   7.9e+03      51      67 ..    1169    1185 ..    1167    1195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0041
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai.......gdpealpaLkellddddddvvReaAaeaL 87 
                 ++l+ ++ l+ed+ ++v  +a++ Lg++       + + +++ L +  +  +d++ R  A  aL
  CDO71748.1  49 KVLRQVLALVEDKISEVKNQAVKCLGQLikiiretQMEYVVDKLIDFSAG-KDEELRDIAGLAL 111
                 55666666666666666666666666543333222224456666664443.3333355555555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.4e-05
      HEAT_2   2 daLlqalen.dpdpevrraairaLg........rignp..ealpaLvellededpavRraaaeaLgai 58 
                 ++Ll++l+n    pe+ ++++  L          + n   + ++ L++ll+++ pavR+ a+ +L+++
  CDO71748.1 134 PKLLAQLQNtNTPPETLIETLSILSilisrfpgYLSNLdiQPIQVLTPLLSHPRPAVRKRAIATLAQF 201
                 78899997778888999999999998777665544444446699*********************997 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.32
      HEAT_2  11 dpdpevrraairaLgrignpealpaLvell.ededpavRraaaea 54 
                 d ++++rr a + L       ++p L+  l +d ++ vR ++  a
  CDO71748.1 342 DTSYKIRRSATKLLSAVIA--TRPELLTTLfNDREETVRLEVWSA 384
                 5566777777777775433..245555555477777777776655 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.36
      HEAT_2  32 alpaLvellededpavRraaaeaLgai.........g...dpealpaLkellddddddvvReaAae 85 
                 + p L+++l  ++p++  +a +  +a+         g   d    +a ++l ++d+d++vR  A+e
  CDO71748.1 523 ITPFLLQALAEKHPRIASEAFRNFSALlnalqpvkgGawiDRVYDEAVRRLSNHDTDAEVRGCAEE 588
                 678888888888888888888744333222333332222222234677777788889999987766 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0035
      HEAT_2  32 alpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvReaAa 84 
                 +++  +e  ++e ++vR aaa a+g i+   ++ +lpa  +++ +d+    R  A+
  CDO71748.1 845 IFNHAIERFTSEQEEVRTAAAFAAGNIAvgnLHHFLPAIVKMVETDQTK--RLLAL 898
                 5566677888999999999999999885334588999999988776543..34445 PP

  == domain 6  score: 14.5 bits;  conditional E-value: 4e-05
      HEAT_2  13 dpevrraairaLg...rignpealpaLvellededpavRraaaeaLg 56 
                 ++ +r  a+ +Lg   + ++ ++lp L   ++d++pa+R+++  a+ 
  CDO71748.1 932 EETTRNVAAACLGkltTTHPARYLPQLQARISDPNPATRATVLSAIR 978
                 334777888888866566888*********************99985 PP

  == domain 7  score: 15.0 bits;  conditional E-value: 2.8e-05
      HEAT_2    7 alendpdpevrraairaLg.rignp.........ealpaLvellededpavRraaaeaLgaigd 60  
                  ++ +dp+p++r++++ a+  ++++          +++  +++ll+d+d  vRr a  aL   ++
  CDO71748.1  961 RI-SDPNPATRATVLSAIRyTFAESpssfdellgSVIMDFLSLLSDSDLTVRRLALSALNSAAR 1023
                  44.9***************74554446777778888***********************75432 PP

  == domain 8  score: -2.7 bits;  conditional E-value: 8.9
      HEAT_2   51 aaeaLgaigdpealpaL 67  
                  a+ aL++i  p a p  
  CDO71748.1 1169 AVAALSKISQPGASPKF 1185
                  88999999988887765 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.0   1.7e-06    0.0016     106     312 ..      41     261 ..      14     286 .. 0.73
   2 ?    2.5   0.0     0.046        41     360     411 ..     622     676 ..     612     694 .. 0.89
   3 !    8.5   0.0   0.00074      0.66     396     474 ..     785     864 ..     754     875 .. 0.83
   4 !   17.5   0.0   1.3e-06    0.0012      78     196 ..     919    1043 ..     874    1153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.7e-06
                 C--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.......HCCCCCCC.HHHHHHHC CS
   Adaptin_N 106 irvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.......kkndrlll.kllpklvr 195
                 ++++ +  ++++++ +l++d+ + v+ +A+ ++ +l+k+  + + ++ +v+++++  + kd  +   A  +l+ i        k  + ++ kl pkl  
  CDO71748.1  41 LGDEATENKVLRQVLALVEDKISEVKNQAVKCLGQLIKIIRETQ-MEyVVDKLIDFSAGKDEELRDIAGLALKTItselppeGKIAQKACeKLTPKLLA 138
                 566667788999***************************99995.6658999999997777655555555555555557999555555577******** PP

                 CHHHHHHCS-HHHHHHHHHHHCC---SSHHHH....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH...SSCCTC..HHHH CS
   Adaptin_N 196 rLcnllteldpwlqvkiiklltrlarqepeersk..kellesllnllqssnnaVlletvnlivelapknelivlavnaLvrlls...skdenl..ryva 287
                 +L+n +t ++    ++ +++l++l+ + p   s+   + ++ l++ll++  +aV   ++ ++ ++ p +++ +++ + L++++s    +  nl  +  +
  CDO71748.1 139 QLQNTNTPPE--TLIETLSILSILISRFPGYLSNldIQPIQVLTPLLSHPRPAVRKRAIATLAQFLPYSQP-QQFNELLITFISpglAPTSNLekQRTV 234
                 ***7754444..4455555555555544444433346999******************************6.999999999997544444444435666 PP

                 HCHHHHHHHHXXTTTT..TTTCCCCSX CS
   Adaptin_N 288 Lrtllkivkkepkavq..hldlkifll 312
                 ++  + ++ ++p+ +     d+ ++ +
  CDO71748.1 235 VQLVAAVARHSPNQIApaLSDIASRII 261
                 666666666666666654445555555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.046
                 HHHHHHHHHHHS...CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTT CS
   Adaptin_N 360 lvkaIgrlaekf...atdaewvldvllellslsgesvkdeivevirdliqkvpel 411
                 +vk + ++a+k+     +++ ++d+++ ll+ sg   k e+ + +  l++++++ 
  CDO71748.1 622 AVKVVTKVATKVdidDAWVSGCVDWVMTLLRKSGRLGKIEAFNCLDALLRRYSQI 676
                 677788888888777899999************9999************999875 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00074
                 HHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHH..HHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHH CS
   Adaptin_N 396 eivevirdliqkvpelheeiiekLaellekieseearaaaiWl..lGeygelvsntesasdllrslaekfvlesekvklqi 474
                  +++ i ++++ + ++ + +i++ a++l++ +  +  ++++ l  +Ge g  +       d++++ +e+f++e+e+v+ ++
  CDO71748.1 785 NVAKCIGQVVKAQRAVAAGTIAEFAKHLKAGSKSKTSQVVLSLlvMGEVGRVIDM-SPQHDIFNHAIERFTSEQEEVRTAA 864
                 5788999***********************6666666666655226******997.44569*****************987 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.3e-06
                  CCCCHHHHHHCCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCH...HHHHHHCTT-SSHHHHHH CS
   Adaptin_N   78 lLvtnslqkDlkdpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkql...veeikellsdkdpgvvla 171 
                  +L t  + +  +++++  r++A  +L+++++   a++l p++++ ++d++p  r + + ai   +  +p+ + + l   ++++ +llsd+d  v + 
  CDO71748.1  919 MLWTPLFEN-SENQEETTRNVAAACLGKLTTTHPARYL-PQLQARISDPNPATRATVLSAIRYTFAESPSSFDELLgsvIMDFLSLLSDSDLTVRRL 1013
                  455555554.467889999**************99996.89*****************99999999988877554434489999999********** PP

                  HHHHHHHH.HCCCCCCC....HHHHHHHCC CS
   Adaptin_N  172 Avalleei.kkndrlll....kllpklvrr 196 
                  A+++l +  + +++l      +llp+l++ 
  CDO71748.1 1014 ALSALNSAaRSKPHLIRdhlpSLLPSLYKE 1043
                  ********6666666556666666666665 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0032       2.9      58     147 ..      49     138 ..      41     157 .. 0.57
   2 ?    3.8   0.0     0.059        52      63     130 ..     179     245 ..     150     298 .. 0.60
   3 ?   -1.2   0.0         2   1.8e+03      59      84 ..     462     487 ..     429     511 .. 0.68
   4 ?   -1.1   0.0       1.9   1.7e+03      31      55 ..     576     602 ..     520     608 .. 0.76
   5 ?    4.4   0.0      0.04        36      14      80 ..     912     975 ..     902     977 .. 0.76
   6 !   16.5   0.0   7.5e-06    0.0068      21     104 ..     953    1040 ..     934    1054 .. 0.83
   7 ?    5.9   0.0     0.013        12      37     106 ..    1069    1140 ..    1060    1174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0032
        Cnd1  58 gflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqh 147
                 ++l +++ l+eD+ ++V + a+ +l ++ +   ++ ++ + d +  +s+  +e  ++     l++++s  p++ + a++ +ekl+p+l +
  CDO71748.1  49 KVLRQVLALVEDKISEVKNQAVKCLGQLIKIIRETQMEYVVDKLIDFSAGKDEELRDIAGLALKTITSELPPEGKIAQKACEKLTPKLLA 138
                 455566666666666666666666666666644555555555555555544454555555555555555555555555555555555543 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.059
        Cnd1  63 laklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkd 130
                 l  ll+ + p V++ a+a l + +   +++++ +ll++ is  +    + + ++q+t++++++     +
  CDO71748.1 179 LTPLLSHPRPAVRKRAIATLAQFLPYsQPQQFNELLITFISPGL--APTSNLEKQRTVVQLVAAVARHS 245
                 44455555555555555555555555344444445555555555..23455555555555544443333 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2
        Cnd1  59 flselaklleDenprVvanalaalte 84 
                 +l  l  +l  +++++va ++a+l+ 
  CDO71748.1 462 LLTVLPGCLASQSAQIVATSKAILST 487
                 44555567777777777777777665 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.9
        Cnd1  31 kDedpyVRktaaivvakL..ilndmvk 55 
                 +D+d+ VR +a  ++  L     d++k
  CDO71748.1 576 HDTDAEVRGCAEECIGDLwiAATDVMK 602
                 688888888888888888744445555 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.04
        Cnd1  14 rvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanala 80 
                 +++++ + l +pL +  + ++++ R+ aa ++ kL +         l +l+  ++D+np  +a +l+
  CDO71748.1 912 QLETVADMLWTPLFENSENQEETTRNVAAACLGKLTTTHP---ARYLPQLQARISDPNPATRATVLS 975
                 5677888888999999999999999999999999966544...457778888888888887776665 PP

  == domain 6  score: 16.5 bits;  conditional E-value: 7.5e-06
        Cnd1   21 ylvepLrkrLkDedpyVRktaaivvakLilnd...mvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiiskl 104 
                   ++++L++r++D++p  R t + ++   + +    + +  g ++ ++++ll+D++ +V+ +al+al+  ++ ++ +i   lp+++ +l
  CDO71748.1  953 RYLPQLQARISDPNPATRATVLSAIRYTFAESpssFDELLGsVIMDFLSLLSDSDLTVRRLALSALNSAARSKPHLIRDHLPSLLPSL 1040
                  57899********************9995554222455566899****************************9999998888877666 PP

  == domain 7  score: 5.9 bits;  conditional E-value: 0.013
        Cnd1   37 VRktaaivvakLilndm..vkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsd 106 
                   Rkta  ++  L++  +      +fl ++a  l D++++V   ++++l  +++ +++a+ + l d+   l +
  CDO71748.1 1069 ARKTAYETLYTLLDTCLsrLDLHEFLGHVAVGLADDSDEVKVICHMMLFRLAQVAPTATAQRLDDLTPPLEK 1140
                  588888888888776652255677******************************999999998888776665 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.065        58      29      55 .]      50      76 ..      44      76 .. 0.73
   2 ?    0.1   0.0       1.4   1.3e+03      17      39 ..     120     142 ..      77     152 .. 0.79
   3 !    7.4   0.0     0.007       6.2      32      54 ..     178     200 ..     176     201 .. 0.90
   4 ?    3.8   0.2     0.096        86       9      55 .]     236     282 ..     230     282 .. 0.84
   5 ?   -1.9   0.0         6   5.4e+03      21      40 ..     426     445 ..     419     450 .. 0.86
   6 ?    1.0   0.0      0.71   6.4e+02      17      43 ..     511     537 ..     504     544 .. 0.79
   7 ?   -1.0   0.0       3.1   2.8e+03      35      48 ..     572     586 ..     568     591 .. 0.82
   8 ?    4.5   0.0     0.059        53       2      30 ..     859     884 ..     851     903 .. 0.66
   9 !    8.4   0.0    0.0033         3      24      53 ..     949     978 ..     930     979 .. 0.77
  10 !   10.4   0.0   0.00084      0.76       3      33 ..    1010    1040 ..     997    1043 .. 0.92
  11 ?   -0.7   0.0       2.4   2.2e+03      29      46 ..    1093    1110 ..    1086    1112 .. 0.78
  12 ?   -2.2   0.0       7.4   6.6e+03      13      42 ..    1118    1145 ..    1115    1151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.065
     HEAT_EZ 29 ilpaLlalLnddsdeVRaaAagaLgnl 55
                +l++ lal +d+ +eV+ +A+ +Lg+l
  CDO71748.1 50 VLRQVLALVEDKISEVKNQAVKCLGQL 76
                44555555555555***********97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.4
     HEAT_EZ  17 gepellqplvpeilpaLlalLnd 39 
                  e+   q++ +++ p Lla L++
  CDO71748.1 120 PEGKIAQKACEKLTPKLLAQLQN 142
                 46667888889999999988866 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.007
     HEAT_EZ  32 aLlalLnddsdeVRaaAagaLgn 54 
                  L +lL+++ ++VR+ A+ +L++
  CDO71748.1 178 VLTPLLSHPRPAVRKRAIATLAQ 200
                 699*****************987 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.096
     HEAT_EZ   9 waLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                   ++++a + p++++p++++i    ++  + d+ e R+ ++ aL++l
  CDO71748.1 236 QLVAAVARHSPNQIAPALSDIASRIIKDSQRDDEELRESCLQALEAL 282
                 5566778999999999999999999977777999**********986 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 6
     HEAT_EZ  21 llqplvpeilpaLlalLndd 40 
                 llq +vp + + Ll+  +++
  CDO71748.1 426 LLQAQVPSLSKTLLNQIKSP 445
                 68999*********999876 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.71
     HEAT_EZ  17 gepellqplvpeilpaLlalLnddsde 43 
                 + p   +p+++ i p+Ll++L  ++++
  CDO71748.1 511 HTPSIYAPYLDSITPFLLQALAEKHPR 537
                 67788899**********999666654 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 3.1
     HEAT_EZ  35 alLnddsd.eVRaaA 48 
                 +l n+d d eVR+ A
  CDO71748.1 572 RLSNHDTDaEVRGCA 586
                 567999999***987 PP

  == domain 8  score: 4.5 bits;  conditional E-value: 0.059
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeil 30 
                 +vR aAa a G++a+g+   l+ ++p+i+
  CDO71748.1 859 EVRTAAAFAAGNIAVGN---LHHFLPAIV 884
                 68999999999888664...444444333 PP

  == domain 9  score: 8.4 bits;  conditional E-value: 0.0033
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 ++  + lp+L a+ +d+++++Ra+++ a++
  CDO71748.1 949 THPARYLPQLQARISDPNPATRATVLSAIR 978
                 4455889******************99985 PP

  == domain 10  score: 10.4 bits;  conditional E-value: 0.00084
     HEAT_EZ    3 vRraAawaLGr.laggepellqplvpeilpaL 33  
                  vRr A++aL + +a   p l+++++p +lp L
  CDO71748.1 1010 VRRLALSAL-NsAARSKPHLIRDHLPSLLPSL 1040
                  89*******.669999*************988 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 2.4
     HEAT_EZ   29 ilpaLlalLnddsdeVRa 46  
                   l   + +L ddsdeV+ 
  CDO71748.1 1093 FLGHVAVGLADDSDEVKV 1110
                  555667899*******86 PP

  == domain 12  score: -2.2 bits;  conditional E-value: 7.4
     HEAT_EZ   13 rlaggepellqplvpeilpaLlalLnddsd 42  
                  rla+++p + ++ ++++ p+L + +  + +
  CDO71748.1 1118 RLAQVAPTATAQRLDDLTPPLEKSM--KGP 1145
                  57899999999999*******9887..555 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.35   3.1e+02     150     203 ..     153     201 ..      48     223 .. 0.52
   2 ?    1.1   0.1      0.28   2.5e+02      72     137 ..     233     296 ..     230     299 .. 0.91
   3 ?    5.5   0.1     0.012        11      63     126 ..     490     554 ..     467     557 .. 0.84
   4 ?   -2.3   0.0       2.9   2.6e+03      92     127 ..     779     814 ..     722     828 .. 0.71
   5 !   28.0   0.0   1.6e-09   1.5e-06      56     224 ..     881    1042 ..     867    1045 .. 0.83
   6 ?    1.2   0.0      0.26   2.3e+02     182     226 ..    1098    1142 ..    1069    1143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.35
     CLASP_N 150 saiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfwef 203
                  +  L+il++rf+    +l++  +  +  ++l+ +l+ + p+VR+ a +t+ +f
  CDO71748.1 153 TLSILSILISRFP---GYLSNLDI--QPIQVLTPLLSHPRPAVRKRAIATLAQF 201
                 2344555556665...45554442..2456677777777777777777776666 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.28
     CLASP_N  72 tgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsv 137
                 t ++l+  +a+   +q++p +  + + ++k  +   +  +++  qal+al+ +++  ++i ++ls+
  CDO71748.1 233 TVVQLVAAVARHSPNQIAPALSDIASRIIKDSQRDDEELRESCLQALEALVLKCP--SEITSFLSA 296
                 67899**************************************************..888777766 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.012
     CLASP_N  63 ssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtKkiisqnanqalaallsnas 126
                  s   +l  t +++l  ++    ++  +p+++++ p Ll+ l+ +  +i+++a+  ++all++++
  CDO71748.1 490 RSSPASLQVTTMSFLALFFSSHTPSiYAPYLDSITPFLLQALAEKHPRIASEAFRNFSALLNALQ 554
                 455567888999999999999999978999******************************98765 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.9
     CLASP_N  92 veillptLlkllgdtKkiisqnanqalaallsnasf 127
                  ++ lp+  k++g+  k  ++ a+ ++a + ++++ 
  CDO71748.1 779 NDASLPNVAKCIGQVVKAQRAVAAGTIAEFAKHLKA 814
                 467789999999999999999999999999888774 PP

  == domain 5  score: 28.0 bits;  conditional E-value: 1.6e-09
     CLASP_N   56 eailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysa 151 
                   ai+k +    t     ++h lke++  + +  l+ ++++l++ L++   ++ + +++ a+++l  l +  +   r l  l++ ++d n+ +R++++
  CDO71748.1  881 PAIVKMVETDQTKRL-LALHALKEVVTHCSHGqLETVADMLWTPLFENSENQEETTRNVAAACLGKLTTTHP--ARYLPQLQARISDPNPATRATVL 974 
                  555555555555443.36799******999999***************************************..*********************** PP

     CLASP_N  152 iwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAksllssldpkvrk 224 
                    ++  + +++   s++++ l+   i+  + ++l+D++ tVR+ a s++ + ++  P   +  l sl p+++k
  CDO71748.1  975 SAIRYTFAESP---SSFDELLGS-VIM-DFLSLLSDSDLTVRRLALSALNSAARSKPHLIRDHLPSLLPSLYK 1042
                  ***********...777776655.455.5668***********999888888888777766666666666665 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.26
     CLASP_N  182 kkgleDanptVRetaRstfweffkvwPsrAksllssldpkvrkal 226 
                    gl+D + +V+    ++++++++v+P+   + l++l p + k++
  CDO71748.1 1098 AVGLADDSDEVKVICHMMLFRLAQVAPTATAQRLDDLTPPLEKSM 1142
                  679*********************************999998876 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.033        30      51      93 ..      51      91 ..      42      97 .. 0.72
   2 ?    2.7   0.0      0.13   1.1e+02      18      91 ..     141     214 ..     123     220 .. 0.71
   3 !    7.1   0.0    0.0056       5.1      13      54 ..     256     297 ..     247     309 .. 0.80
   4 !    9.2   0.0    0.0013       1.1      10     100 ..     435     529 ..     426     531 .. 0.83
   5 ?   -0.8   0.0       1.6   1.5e+03      25      45 ..     890     910 ..     872     950 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.033
         UME 51 lpqimacLqsaleidelrsaalsvWatllsnlededleplleq 93
                l q++a+  + ++  e++++a+++   l++++ ++++e ++++
  CDO71748.1 51 LRQVLALVEDKIS--EVKNQAVKCLGQLIKIIRETQMEYVVDK 91
                5566666655554..5788888888888888888888888776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
         UME  18 ndshgkkslaekkraikaleeliklagssissalpqimacLqsalei..delrsaalsvWatllsnlededlepll 91 
                 ++++  +++++ ++++  l+ li+ + +++s    q + +L   l++  +++r+ a+ + a +l   +++++ +ll
  CDO71748.1 141 QNTN--TPPETLIETLSILSILISRFPGYLSNLDIQPIQVLTPLLSHprPAVRKRAIATLAQFLPYSQPQQFNELL 214
                 3322..3677778888888888888888877777777777777777755688888888888888888888877776 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0056
         UME  13 lseklndshgkkslaekkraikaleeliklagssissalpqi 54 
                 +++ + + +++ + + ++ +++ale+l+  + s+i+s+l  i
  CDO71748.1 256 IASRIIKDSQRDDEELRESCLQALEALVLKCPSEITSFLSAI 297
                 5555555555569999********************998765 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0013
         UME  10 ltrlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleid......elrsaalsvWatllsnlededleplleqtfalivq 100
                  + l +++++   k++  + +  ++ l++l+ ++ + ++s  +qi+a+ +  l++        l+  ++s  a + s+  ++   p+l++++ +++q
  CDO71748.1 435 SKTLLNQIKSP--KTPAPTLEAGLNLLHKLLTVLPGCLASQSAQIVATSKAILSTSprsspaSLQVTTMSFLALFFSSHTPSIYAPYLDSITPFLLQ 529
                 55555666333..4478888999999***************************995677777*****************************998887 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.6
         UME  25 slaekkraikaleeliklags 45 
                 +  ++  a++al+e++ ++++
  CDO71748.1 890 DQTKRLLALHALKEVVTHCSH 910
                 455778899999999999876 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.34   3.1e+02      14     114 ..      64     165 ..      50     174 .. 0.62
   2 !   13.9   0.0   3.4e-05     0.031       2     126 ..     177     299 ..     176     307 .. 0.75
   3 !    6.4   0.0    0.0066       5.9      13     156 ..     345     554 ..     332     570 .. 0.76
   4 ?   -3.4   0.0       6.3   5.7e+03      43      93 ..     747     798 ..     733     820 .. 0.61
   5 ?    3.0   0.3     0.073        65       9      66 ..     887     944 ..     884    1115 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.34
     MMS19_N  14 kvRakavslLaevlsrlpkkklseeevevLvqFflsrle.dfavlkealkgll.aLlrlkkfsaeeavevlralfeevhvqslaqadRklvyelldall 110
                 +v+++av++L ++++ +++ +  e  v+ L++F + + e   ++   alk ++ +L    k++++  +++  +l+ +++  + + ++  +++++l+ l+
  CDO71748.1  64 EVKNQAVKCLGQLIKIIRE-TQMEYVVDKLIDFSAGKDEeLRDIAGLALKTITsELPPEGKIAQKACEKLTPKLLAQLQNTNTPPETLIETLSILSILI 161
                 5677778888887777765.6667777777777776655322222234444331344556666666667777777777777777777777777777777 PP

     MMS19_N 111 ekhr 114
                 +++ 
  CDO71748.1 162 SRFP 165
                 6665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.4e-05
     MMS19_N   2 eaLgeyLtseddkvRakavslLaevlsrlpkkklseeevevLvqFflsrle...dfavlkealkgllaLlrlkkfsaee.avevlralfeevhvqslaq 96 
                 + L + L + + +vR++a+  La++l  +++    ++  e+L++F+   l+   + +  +++++ ++a++r++  + +    ++++++++  + q   +
  CDO71748.1 177 QVLTPLLSHPRPAVRKRAIATLAQFLPYSQP----QQFNELLITFISPGLAptsNLEKQRTVVQLVAAVARHSPNQIAPaLSDIASRIIK--DSQRDDE 269
                 678999*******************886664....6677899999999999544444556666666666666555444446779999998..5666788 PP

     MMS19_N  97 adRklvyelldallekhrealkelgedfle 126
                 + R+++++ l+al+ k+ +++++  + ++ 
  CDO71748.1 270 ELRESCLQALEALVLKCPSEITSFLSAIIR 299
                 99************9999999755444444 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0066
     MMS19_N  13 dkvRakavslLaev............................................................lsrlpkkklseeevevLvqFflsrl 51 
                  k+R+ a++lL++v                                                            ++++p  +l +++v +L++ +l+++
  CDO71748.1 345 YKIRRSATKLLSAViatrpellttlfndreetvrlevwsaygvlltqtgvyggspqssaehtvggkrkreegmeVEETPY-SLLQAQVPSLSKTLLNQI 442
                 56777777777777777777777777777777777777777777777777777777777777777777777777889998.8999************** PP

     MMS19_N  52 edfavlkealkgllaLlrl........kkfsaeeavevlralfeevhvqslaqadRklvyelldallekhrealkelgedflegfvelvdgEkDPrnLl 142
                 +  ++ +++l++ l+Ll++         + +++++v+  +a++ +++++s +++    ++++l  ++++h+ ++     d ++ f+  +  Ek Pr   
  CDO71748.1 443 KSPKTPAPTLEAGLNLLHKlltvlpgcLASQSAQIVATSKAIL-STSPRSSPASLQVTTMSFLALFFSSHTPSIYAPYLDSITPFLLQALAEKHPRIAS 540
                 *999988888877777744455555324445555666666666.699999999999***********999999954555788888888889******** PP

     MMS19_N 143 lvfellkvllrefd 156
                  +f+ + +ll++++
  CDO71748.1 541 EAFRNFSALLNALQ 554
                 ***99999998875 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 6.3
     MMS19_N  43 LvqFflsrle.dfavlkealkgllaLlrlkkfsaeeavevlralfeevhvqs 93 
                 +++Ff+  +e d+++  +++  l   +++ + ++++  +v++ + + v+ q 
  CDO71748.1 747 VLAFFAALVEaDMQIATHVVPNLVIAVEKAAKNDASLPNVAKCIGQVVKAQR 798
                 5556666666666666666655555555545455555555555555555444 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.073
     MMS19_N   9 tseddkvRakavslLaevlsrlpkkklseeevevLvqFflsrledfavlkealkglla 66 
                 +++d++ R  a++ L+ev++++++ +l+  +  + +  f +  +++++++++++++l 
  CDO71748.1 887 VETDQTKRLLALHALKEVVTHCSHGQLETVADMLWTPLFENSENQEETTRNVAAACLG 944
                 6677788888888888888888765565544444444444444466666666666543 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.015        13      27      96 ..       5      78 ..       2      79 .. 0.86
   2 !    8.5   0.2    0.0033         3      24      86 ..      46     105 ..      23     115 .. 0.82
   3 ?   -0.4   0.0       1.9   1.7e+03      18      70 ..     246     298 ..     230     309 .. 0.64
   4 ?    0.8   0.0      0.87   7.8e+02      22      89 ..     517     587 ..     498     624 .. 0.72
   5 ?   -2.5   0.0         9     8e+03      67      89 ..     843     865 ..     836     868 .. 0.85
   6 ?   -0.1   0.0       1.6   1.5e+03      25      86 ..     876     937 ..     862     949 .. 0.63
   7 ?    4.1   0.0     0.081        73      21      75 ..     988    1042 ..     970    1056 .. 0.82
   8 ?   -0.7   0.0       2.5   2.3e+03      26      70 ..    1091    1135 ..    1070    1157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
  Vac14_Fab1_bd 27 eivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk...llneifdalvklvaDsdesvks.gaelldrllk 96
                    i++ +++ ++  d+  Ry     l   +k+  +++l    + n+++  +  lv D+ ++vk+ ++++l +l+k
     CDO71748.1  5 YIMTGLVEKMQSPDQDFRYMGLNDLLLEIKQDPNSFLGdeaTENKVLRQVLALVEDKISEVKNqAVKCLGQLIK 78
                   58888999*****************************75547799****************9824567777765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0033
  Vac14_Fab1_bd  24 yleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvks 86 
                      +++++ vl+ ++Dk s+v+  a+ +l  ++k+++++ +++   + d l+  +a +de++++
     CDO71748.1  46 TENKVLRQVLALVEDKISEVKNQAVKCLGQLIKIIRETQMEY---VVDKLIDFSAGKDEELRD 105
                    45799********************************98766...567777788877777776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.9
  Vac14_Fab1_bd  18 ekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneif 70 
                     ++i++ l++i + ++k  + +d+++R     +l  ++ ++ +e+ ++l+ i 
     CDO71748.1 246 PNQIAPALSDIASRIIKDSQRDDEELRESCLQALEALVLKCPSEITSFLSAII 298
                    45566777777777777777777777766666666666666666666665554 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.87
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvR...yyacEslyniakvakgevlkllneifdalvklv..aDsdesvksgae 89 
                    ++yl++i + +l+++ +k  r+    +    +l n  + +kg +   + +++d  v+ +   D+d++v+  ae
     CDO71748.1 517 APYLDSITPFLLQALAEKHPRIAseaFRNFSALLNALQPVKGGA--WIDRVYDEAVRRLsnHDTDAEVRGCAE 587
                    67888888888888888888874111333445555555555543..678888866554312588888888775 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 9
  Vac14_Fab1_bd  67 neifdalvklvaDsdesvksgae 89 
                    ++if+  ++ ++ ++e+v+++a+
     CDO71748.1 843 HDIFNHAIERFTSEQEEVRTAAA 865
                    58999999999999999999987 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 1.6
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllne.ifdalvklvaDsdesvks 86 
                    l+++++ ++k+++ +d+  R  a  +l  ++  + +  l+++ + +++ l++ +  ++e  ++
     CDO71748.1 876 LHHFLPAIVKMVE-TDQTKRLLALHALKEVVTHCSHGQLETVADmLWTPLFENSENQEETTRN 937
                    5666777776664.5555688999999888888888777766551455555555555555555 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.081
  Vac14_Fab1_bd   21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvk 75  
                      +e l +++   l+ +sD+d  vR  a  +l   a+   + +  +l +++  l+k
     CDO71748.1  988 FDELLGSVIMDFLSLLSDSDLTVRRLALSALNSAARSKPHLIRDHLPSLLPSLYK 1042
                     567788999999******************9999998888888888887777665 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 2.5
  Vac14_Fab1_bd   26 eeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneif 70  
                     +e++  v   + D++++v+      l+ +a+va ++  + l ++ 
     CDO71748.1 1091 HEFLGHVAVGLADDSDEVKVICHMMLFRLAQVAPTATAQRLDDLT 1135
                     567777888889999999999999999999999999888887765 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1    0.0002      0.18       5      88 ..      11      97 ..       7     118 .. 0.85
   2 ?    2.6   0.1      0.16   1.5e+02       8      74 ..     183     289 ..     177     329 .. 0.56
   3 ?   -2.9   0.1       8.2   7.4e+03       4      28 ..     438     464 ..     436     485 .. 0.70
   4 ?   -0.5   0.0       1.5   1.3e+03      48      83 ..     927     962 ..     889     972 .. 0.63
   5 ?    5.3   0.0     0.024        21       5      56 ..     959    1010 ..     955    1039 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0002
     RTP1_C1  5 lkdlqdpllpvrahglvlLrkliekkske...avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeene 88
                ++++q+p   +r  gl+ L   i++  ++   ++++ +k+l+ +l  ++d+ s v  +a+k+L +L++++ e+ ++ ++++  + + 
  CDO71748.1 11 VEKMQSPDQDFRYMGLNDLLLEIKQDPNSflgDEATENKVLRQVLALVEDKISEVKNQAVKCLGQLIKIIRETQMEYVVDKLIDFSA 97
                6889**************99999988766999*****************************************99999998833333 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.16
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkske.....................................avldiekilkllleaLk...dedsYvYLnaikgLva 66 
                 l+ p ++vr +++ +L++ +  ++++                                     + + ++++ ++  + +k    +d+ +  ++ ++L+a
  CDO71748.1 183 LSHPRPAVRKRAIATLAQFLPYSQPQqfnellitfispglaptsnlekqrtvvqlvaavarhsPNQIAPALSDIASRIIKdsqRDDEELRESCLQALEA 281
                 566777777777777777776666555555555555555555544444444444444433333333333333333333331112333344445555555 PP

     RTP1_C1  67 Ladvfpee 74 
                 L+ ++p+e
  CDO71748.1 282 LVLKCPSE 289
                 55555555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8.2
     RTP1_C1   4 alkdlqdpll..pvrahglvlLrklie 28 
                  l+++++p    p+   gl+lL+kl++
  CDO71748.1 438 LLNQIKSPKTpaPTLEAGLNLLHKLLT 464
                 567777775411566789999999986 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.5
     RTP1_C1  48 aLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83 
                 + +++++     a  +L +L++++p++ l++L ++ 
  CDO71748.1 927 NSENQEETTRNVAAACLGKLTTTHPARYLPQLQARI 962
                 445555555556778999999999999999987765 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.024
     RTP1_C1    5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYv 56  
                   + ++dp +++ra  l+ +r  + ++ ++  + + +++  +l+ L+d+d  v
  CDO71748.1  959 QARISDPNPATRATVLSAIRYTFAESPSSFDELLGSVIMDFLSLLSDSDLTV 1010
                  5679999999999999999999888888888888888888999999998555 PP

>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       1.2   1.1e+03      23      58 ..      50      85 ..      27      94 .. 0.69
   2 !   11.4   0.0   0.00036      0.32      11      85 ..     222     295 ..     214     301 .. 0.90
   3 !    7.7   0.2    0.0053       4.8      10      91 ..     886     965 ..     877    1022 .. 0.80
   4 ?   -2.7   0.0       9.1   8.1e+03       5      46 ..     997    1037 ..     993    1041 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
  Telomere_reg-2 23 aLksaeeLirrkadeveenaveLataLltledkfdi 58
                     L+++  L++ k +ev++ av+ + +L+++  ++++
      CDO71748.1 50 VLRQVLALVEDKISEVKNQAVKCLGQLIKIIRETQM 85
                    466666777777777777777777777666544444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00036
  Telomere_reg-2  11 LrdkddyekieaaLksaeeLirrkadeveenaveLataLltledkfdienfeelrlnalvallvatpekvaeylt 85 
                     L  +++ ek+++  + ++   r+++++++   +++a+ +++ +++ d e+  e +l+al al+ ++p++++ +l 
      CDO71748.1 222 LAPTSNLEKQRTVVQLVAAVARHSPNQIAPALSDIASRIIKDSQR-DDEELRESCLQALEALVLKCPSEITSFLS 295
                     5556788999999999999999*******************9998.************************99886 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0053
  Telomere_reg-2  10 lLrdkddyekieaaLksaeeLirrkad.eveenaveLataLltledkfdienfeelrlnalvallvatpekvaeylteeffsn 91 
                     + + +d+  k  +aL++++e + + ++ ++e +a  L t L + +++ ++e+  +   ++l +l++++p +  + l  ++ ++
      CDO71748.1 886 MVE-TDQT-KRLLALHALKEVVTHCSHgQLETVADMLWTPLFENSEN-QEETTRNVAAACLGKLTTTHPARYLPQLQARISDP 965
                     444.5564.5559**********999989999**************9.9999******************9999776666543 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 9.1
  Telomere_reg-2    5 kdllelLrdkddyekieaaLksaeeLirrkadeveenaveLa 46  
                       d l+lL d+d     ++aL+++++  r+k++ ++++  +L+
      CDO71748.1  997 MDFLSLLSDSDL-TVRRLALSALNSAARSKPHLIRDHLPSLL 1037
                      566666665554.66678888888777777777777666665 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.005       4.4      47     113 ..      10      77 ..       2      79 .. 0.77
   2 ?    0.2   0.0      0.89     8e+02      88     113 ..     177     202 ..     123     205 .. 0.77
   3 ?    1.1   0.0      0.44     4e+02      86     114 ..     256     284 ..     224     286 .. 0.76
   4 ?   -3.1   0.0       9.1   8.2e+03      58      79 ..     796     817 ..     779     830 .. 0.74
   5 ?    0.1   0.0      0.93   8.3e+02      44      80 ..     880     914 ..     865     950 .. 0.67
   6 ?   -1.1   0.0       2.3     2e+03      91     111 ..    1000    1020 ..     979    1024 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.005
  V-ATPase_H_C  47 LiklleeskdktvlavalnDigelvkllpeg..kkvleklkaKekimellehedeevkyeALkavqkll 113
                   L++ + +s d+    + lnD+   +k+ p++   +  ++ k+  ++++l+e++ +evk +A k++ +l+
    CDO71748.1  10 LVEKM-QSPDQDFRYMGLNDLLLEIKQDPNSflGDEATENKVLRQVLALVEDKISEVKNQAVKCLGQLI 77 
                   55556.466777888889999999999887622355567777889********************9987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.89
  V-ATPase_H_C  88 ekimellehedeevkyeALkavqkll 113
                   +++  ll+h+ + v+++A+ ++ ++l
    CDO71748.1 177 QVLTPLLSHPRPAVRKRAIATLAQFL 202
                   5677899**************99887 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.44
  V-ATPase_H_C  86 aKekimellehedeevkyeALkavqkllv 114
                   + ++i++  + +dee++   L+a+++l++
    CDO71748.1 256 IASRIIKDSQRDDEELRESCLQALEALVL 284
                   4678899999999********99999886 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 9.1
  V-ATPase_H_C  58 tvlavalnDigelvkllpegkk 79 
                    + ava+  i+e++k+l+ g+k
    CDO71748.1 796 AQRAVAAGTIAEFAKHLKAGSK 817
                   5578999999999999887765 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.93
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkv 80 
                   l +++k++  ++d+t   +al+ ++e+v+++++g+  
    CDO71748.1 880 LPAIVKMV--ETDQTKRLLALHALKEVVTHCSHGQLE 914
                   55677777..467777889999999999999887644 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.3
  V-ATPase_H_C   91 mellehedeevkyeALkavqk 111 
                    ++ll+++d +v++ AL a+++
    CDO71748.1 1000 LSLLSDSDLTVRRLALSALNS 1020
                    6789999*********99875 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.5     0.021        19     326     417 ..     125     218 ..      39     223 .. 0.87
   2 ?    4.6   0.2     0.016        15     161     235 ..     224     294 ..     219     300 .. 0.72
   3 ?    8.8   2.5   0.00083      0.75     344     402 ..     492     550 ..     421     557 .. 0.84
   4 ?    1.9   0.2      0.11        96     109     199 ..     817     922 ..     738     947 .. 0.53
   5 ?    8.4   0.3    0.0012         1     383     420 ..    1003    1040 ..     952    1042 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
     MMS19_C 326 kQrfFstvlpklvegfks..sdsetkenyLvALshllkhvP...kslllpeLptLlPlLlqaLdlpdaevkastLetlksile.espslvsehlssLv 417
                  Q+ +++++pkl+++ ++  + +et    L  Ls l++  P   ++l ++ ++ L Pl    L+ p ++v++ ++ tl+  l  ++p+ ++e l + +
  CDO71748.1 125 AQKACEKLTPKLLAQLQNtnTPPETLIETLSILSILISRFPgylSNLDIQPIQVLTPL----LSHPRPAVRKRAIATLAQFLPySQPQQFNELLITFI 218
                 6*****************999999999**************43344445555556666....699**************9999877888887666655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.016
     MMS19_C 161 esasesqkqliilftailaalrkevklpdlsellnellellaseaespflrlaylrllallvNKflkdedlsell 235
                 ++++ +++++++ + a++a  +++   p ls++++++++   s+ +++ lr ++l++l  lv K++  +++ ++l
  CDO71748.1 224 PTSNLEKQRTVVQLVAAVARHSPNQIAPALSDIASRIIK--DSQRDDEELRESCLQALEALVLKCP--SEITSFL 294
                 456666777777777777777777666888888888888..7777888899999999999999988..4444443 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00083
     MMS19_C 344 sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksil 402
                 s  + +      L++  ++  +s++ p+L ++ P+LlqaL+ + + + + +   ++++l
  CDO71748.1 492 SPASLQVTTMSFLALFFSSHTPSIYAPYLDSITPFLLQALAEKHPRIASEAFRNFSALL 550
                 5555555555567888888999******************9998888766655555555 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.11
     MMS19_C 109 siltddrllevlgriinlivrslssskqqevleevvalfltgdask.................kfeplsesasesqkqliilftailaalrkevklpdl 190
                 +  t++ +l++l  ++  + r+++ s q ++++++++ f++++++                  +f p   +  e+ ++  +l  ++l  +   ++  +l
  CDO71748.1 817 KSKTSQVVLSLL--VMGEVGRVIDMSPQHDIFNHAIERFTSEQEEVrtaaafaagniavgnlhHFLPAIVKMVETDQTKRLLALHALKEVVTHCSHGQL 913
                 455555555555..5677788888888888888888888877666566666666666666665555544444433333335555555555555555555 PP

     MMS19_C 191 sellnelle 199
                 +++++ l +
  CDO71748.1 914 ETVADMLWT 922
                 555555554 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0012
     MMS19_C  383 LdlpdaevkastLetlksileespslvsehlssLvprL 420 
                  L+ +d +v++ +L+ l+s+++++p+l+ +hl sL p+L
  CDO71748.1 1003 LSDSDLTVRRLALSALNSAARSKPHLIRDHLPSLLPSL 1040
                  3445777*****************************98 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.8   8.9e-05     0.079     160     210 ..     265     342 ..     222     347 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-05
  RNA_pol_3_Rpc31 160 adeedeegkelleklk.............................elaeeeddeeekkekedeeeeeeeeeddefdddde 210
                      +++++e  ++ l++l+                             + a  +dd  e++e  d+e+e++ee  +e++dd++
       CDO71748.1 265 QRDDEELRESCLQALEalvlkcpseitsflsaiirvgiqyikydpNYAGGDDD--EDEEMADDEDEDDEELGEEYEDDED 342
                      44555555666666666666666666666666666666666676533333444..2334444444445899999998884 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3    0.0079       7.1      56      93 ..      46      83 ..      44     111 .. 0.83
   2 ?    1.4   0.1      0.12   1.1e+02      43     165 ..     158     290 ..     153     300 .. 0.67
   3 ?    2.1   0.0     0.074        66      52      94 ..     987    1029 ..     982    1047 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0079
        API5 56 laekaidaqlDLiedddlgirkqAikdLpslckdtkey 93
                +++k++ + l L+ed+  +++ qA+k L +l k  +e+
  CDO71748.1 46 TENKVLRQVLALVEDKISEVKNQAVKCLGQLIKIIRET 83
                689999*********************99998866554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
        API5  43 sqlipkFfkfFPslaekaidaqlDLiedddlgirkqAikdLpslc.kdtkeyvsk.iadiLaQlLitedaveldavhkallsllkldakasltalfkqi 139
                 s li++F  +  +l  + i+++  L+     ++rk Ai  L+++   +++++ +  ++  +   L   +++e++ +   l++ +  ++ + +   +++i
  CDO71748.1 158 SILISRFPGYLSNLDIQPIQVLTPLLSHPRPAVRKRAIATLAQFLpYSQPQQFNElLITFISPGLAPTSNLEKQRTVVQLVAAVARHSPNQIAPALSDI 256
                 568999999999999999999999999999999999999999975145555554414555566677777777766555555444444444444434444 PP

        API5 140 etee........etvRekvlkfireklftlkeel 165
                 ++          e++Re +l+ +++ +++ ++e+
  CDO71748.1 257 ASRIikdsqrddEELRESCLQALEALVLKCPSEI 290
                 3332333366668888888888888887777766 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.074
        API5   52 fFPslaekaidaqlDLiedddlgirkqAikdLpslckdtkeyv 94  
                  +F +l  ++i   l L+ d dl++r+ A+ +L s +++++  +
  CDO71748.1  987 SFDELLGSVIMDFLSLLSDSDLTVRRLALSALNSAARSKPHLI 1029
                  688999999999********************99999988654 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.9   2.6e+03      72      87 ..      67      82 ..       9     162 .. 0.64
   2 ?    2.8   0.0      0.12   1.1e+02      59     110 ..     234     285 ..     205     314 .. 0.72
   3 ?    1.2   0.0      0.39   3.5e+02      76     110 ..     679     713 ..     659     718 .. 0.76
   4 ?    0.4   0.0      0.68   6.1e+02      70     116 ..     758     802 ..     744     823 .. 0.77
   5 ?    3.6   0.0     0.069        62      36     108 ..     876     947 ..     869     953 .. 0.87
   6 ?    1.1   0.0      0.43   3.9e+02      31      90 ..    1085    1143 ..    1073    1156 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.9
       ParcG 72 ekilpvlpklilplke 87
                ++ +++l +li  ++e
  CDO71748.1 67 NQAVKCLGQLIKIIRE 82
                3333333333333332 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
       ParcG  59 tegikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvka 110
                 +  +   + +++ ++i p+l  +   + ++ +  dee  es+L++l+ lv  
  CDO71748.1 234 VVQLVAAVARHSPNQIAPALSDIASRIIKDSQRDDEELRESCLQALEALVLK 285
                 33333334447999***********************************854 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.39
       ParcG  76 pvlpklilplkeaLntrdeeviesaLkvlqklvka 110
                 ++ p li  lk+ ++t d   + s+L+++  l++ 
  CDO71748.1 679 DLPPSLIPSLKAYISTADILLLGSTLDIIALLLEL 713
                 344789999********************999765 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.68
       ParcG  70 geekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaselige 116
                   +  ++v+p+l++++ +a  +++++ + ++ k++ ++vka++ + +
  CDO71748.1 758 DMQIATHVVPNLVIAVEKA--AKNDASLPNVAKCIGQVVKAQRAVAA 802
                 4445578999999999998..57888899999999999999888765 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.069
       ParcG  36 ydalLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklv 108
                  +++Lp ++  ++et++  r+la +++k++++++++ ++ +v  +l +pl e+ ++++e+   +a  +l kl 
  CDO71748.1 876 LHHFLPAIVK-MVETDQTKRLLALHALKEVVTHCSHGQLETVADMLWTPLFENSENQEETTRNVAAACLGKLT 947
                 5788998887.8999***********************************99999999988888888888775 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.43
       ParcG   31 iekLdydalLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLn 90  
                  ++ Ld +++L  ++ Gl+++++  +++ ++++  l +  + +   + l  l  pl + ++
  CDO71748.1 1085 LSRLDLHEFLGHVAVGLADDSDEVKVICHMMLFRLAQV-APTATAQRLDDLTPPLEKSMK 1143
                  689************************99999988888.888999999999999887765 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0061       5.5     128     158 ..      54      84 ..      50     120 .. 0.88
   2 ?   -1.3   0.0       1.4   1.2e+03     108     156 ..     241     288 ..     181     301 .. 0.64
   3 ?   -1.0   0.1       1.1   9.9e+02      97     146 ..     494     545 ..     413     562 .. 0.52
   4 ?    4.5   0.5     0.024        22     119     159 ..     874     915 ..     860    1052 .. 0.92
   5 ?    1.3   0.2      0.22     2e+02     119     208 ..     990    1085 ..     922    1115 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0061
        Tti2 128 iLnllDdtdtsvKlrGlklLqtlleklessk 158
                 +L+l++d+  +vK +++k+L +l++ +++++
  CDO71748.1  54 VLALVEDKISEVKNQAVKCLGQLIKIIRETQ 84 
                 79************************99986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
        Tti2 108 iirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtllekles 156
                 + r++ ++ i   ++ i + i++    +d++++++ l+ L+ l+ k++s
  CDO71748.1 241 VARHSPNQ-IAPALSDIASRIIKDSQRDDEELRESCLQALEALVLKCPS 288
                 33333332.4444444444444444455566666666666666666665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.1
        Tti2  97 gdlkaisvlawiirqlqsk.ei.eanwplivPpiLnllDdtdtsvKlrGlkl 146
                   l+++++  +++ +++++ +i   ++  i+P++L+ l ++++++   + + 
  CDO71748.1 494 ASLQVTTMSFLALFFSSHTpSIyAPYLDSITPFLLQALAEKHPRIASEAFRN 545
                 3344444444444444444434466777777777776666666665555555 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.024
        Tti2 119 anwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk..l 159
                  n++ + P+i+++++ ++t  +l +l+ L++++ ++++ +  +
  CDO71748.1 874 GNLHHFLPAIVKMVETDQT-KRLLALHALKEVVTHCSHGQleT 915
                 5899**********97665.5999************9985443 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.22
        Tti2  119 anwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk......llkrtGLdsvfedallpcllyLPsltpeeeSlklLraaYpallsLaklef 208 
                  + +  ++   L+ll d+d +v+  +l+ L++   + ++        ll +     v  + l+ +  + P +  +++ l+  ++aY++l++L+++  
  CDO71748.1  990 ELLGSVIMDFLSLLSDSDLTVRRLALSALNSAARSKPHLIrdhlpsLLPSLYKETVVNPDLIRTVQMGPWTHKVDDGLEARKTAYETLYTLLDTCL 1085
                  455555555566666777777766666666655544444345566555555556677777888888888888888888888999999999998876 PP

>> Sec5  Exocyst complex component Sec5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00045       0.4     118     178 ..      35      97 ..      19     101 .. 0.85
   2 ?   -0.6   0.1       1.1   9.8e+02     145     176 ..     129     160 ..     124     178 .. 0.79
   3 ?   -2.6   0.0       4.5     4e+03      31     167 ..     910     935 ..     882     944 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
        Sec5 118 strqslveedkkqvkvfkkvwsevekiieeyrkklwekLleld..esqeeflkliskLleLev 178
                 + ++s++ ++++++kv+++v++ ve+ i+e++++  + L +l    ++++++ +++kL++ ++
  CDO71748.1  35 QDPNSFLGDEATENKVLRQVLALVEDKISEVKNQAVKCLGQLIkiIRETQMEYVVDKLIDFSA 97 
                 44555668899****************************999987788888888899998765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
        Sec5 145 ieeyrkklwekLleldesqeeflkliskLleL 176
                  e++  kl ++L++++++ e+ ++++s+L+ L
  CDO71748.1 129 CEKLTPKLLAQLQNTNTPPETLIETLSILSIL 160
                 56777789999999999999999999999877 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.5
        Sec5  31 eskteaqedslveeLeeslneairkttllfkpvlenkekadklraaleviernkflFnLPksLkesiakgdydklindYkkakslfestrqslveedkk 129
                  +++e                                                                                              
  CDO71748.1 910 HGQLETV-------------------------------------------------------------------------------------------- 916
                 3333333............................................................................................ PP

        Sec5 130 qvkvfkkvwsevekiieeyrkklwekLleldesqeefl 167
                                     ++lw+ L e +e+qee  
  CDO71748.1 917 -------------------ADMLWTPLFENSENQEETT 935
                 ...................3444444444444444333 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.6    0.0082       7.3     255     296 ..     303     344 ..     298     353 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0082
       NOA36 255 dydaylkalasgddeddegdedddddddeedddeeeddedee 296
                 +y +y  ++a+gdd++de+  dd+d+ddee  +e edded+ 
  CDO71748.1 303 QYIKYDPNYAGGDDDEDEEMADDEDEDDEELGEEYEDDEDTS 344
                 567788888888888888888888888888777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.11u 0.36s 00:00:01.47 Elapsed: 00:00:00.51
# Mc/sec: 7151.31
//
Query:       CDO71749.1  [L=177]
Description: hypothetical protein BN946_scf184920.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1219.60
//
Query:       CDO71750.1  [L=417]
Description: hypothetical protein BN946_scf184920.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-36  126.1   0.0    1.9e-36  125.4   0.0    1.3  1  AAA        ATPase family associated with various cellular act
      1e-27   95.9   0.2    4.5e-27   93.8   0.3    2.1  2  Vps4_C     Vps4 C terminal oligomerisation domain
    2.8e-24   85.0   8.3    2.8e-24   85.0   8.3    1.8  2  MIT        MIT (microtubule interacting and transport) domain
    7.5e-08   32.1   0.0    3.3e-07   30.0   0.0    2.1  2  AAA_lid_3  AAA+ lid domain
     0.0066   16.5   0.6      0.019   15.0   0.0    1.9  2  AAA_14     AAA domain
  ------ inclusion threshold ------
      0.056   13.2   2.9      0.099   12.4   2.9    1.5  1  Use1       Membrane fusion protein Use1
      0.063   13.6   2.5        2.1    8.6   0.6    2.8  2  AAA_22     AAA domain
        1.1    9.5   5.2        5.9    7.3   2.0    3.0  3  TPR_2      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   8.6e-40   1.9e-36       8     132 .]     160     282 ..     158     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 8.6e-40
                 TSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEE CS
         AAA   8 GtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivi 106
                 GtGK++lakava+e++ +f+++s s+l+sk++gese+ +r+lf+ a+e++ p i+fiDE+d+la++r++sese ++r+  ++l +++gv +++  v+v+
  CDO71750.1 160 GTGKSYLAKAVATEAKGTFFSVSSSDLVSKWQGESERLVRQLFEMARENK-PAIIFIDEVDSLAGTRNESESEGSRRIKTEFLVQMNGVGHDDTGVLVL 257
                 9************************************************8.************************************************ PP

                 EEESSGGGSTHHHHSTTSSEEEETTS CS
         AAA 107 gatnrpdkldpallrgRfdrkieiel 132
                 gatn p++ld+a+  +Rf+++i+i+l
  CDO71750.1 258 GATNIPWQLDNAIK-RRFEKRIYIPL 282
                 **************.7*******985 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.3   5.1e+03      37      51 ..     121     135 ..     118     139 .. 0.74
   2 !   93.8   0.3     2e-30   4.5e-27       1      61 []     353     413 ..     353     413 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.3
      Vps4_C  37 alkkarptVskeDLe 51 
                 a+ + +p V  eD++
  CDO71750.1 121 AIVTEKPNVKWEDVA 135
                 777888888888875 PP

  == domain 2  score: 93.8 bits;  conditional E-value: 2e-30
      Vps4_C   1 ltPCspgdpgaiemtwmdipsdkllePpvtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 +tPCspgdp+a+e+ w+di+s++llePp++l+Dflk+l ++rptV++eD++khe++T e G
  CDO71750.1 353 WTPCSPGDPDAQEKLWTDIESEELLEPPLRLSDFLKSLDSVRPTVTAEDIKKHEQWTLESG 413
                 9********************************************************9988 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   8.3   1.2e-27   2.8e-24       1      65 []       5      70 ..       5      70 .. 0.98
   2 ?   -3.6   0.1       5.7   1.3e+04       1      12 [.     137     148 ..     137     148 .. 0.76

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 1.2e-27
         MIT  1 ldkAlelvkkAveeDnagnyeeAlelYkealelLlqalk.ekneerrellrekieeYleRaeeLke 65
                ld+A+e+v++A+eeD+a+nyeeA++lY++al+++++alk ekne+++ l+++k +eYl Rae Lke
  CDO71750.1  5 LDRAIEIVQRAIEEDKANNYEEAYKLYSNALDYFMLALKyEKNEKSKTLIKQKFTEYLHRAETLKE 70
                89*************************************88***********************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.7
         MIT   1 ldkAlelvkkAv 12 
                 l++A e +k+Av
  CDO71750.1 137 LESAKESLKEAV 148
                 678888888887 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.5e-10   3.3e-07       3      35 ..     307     339 ..     305     345 .. 0.89
   2 ?   -2.2   0.0       1.7   3.9e+03      31      45 .]     390     404 ..     387     404 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.5e-10
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgi 35 
                 d+  LAe+T+GySG D+a ++r A +  +r ++
  CDO71750.1 307 DYRLLAEKTDGYSGSDIAVVVRDALMQPVRKVL 339
                 55669**********************999875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
   AAA_lid_3  31 lrrgikeitmedfee 45 
                 l+ +++++t ed+++
  CDO71750.1 390 LDSVRPTVTAEDIKK 404
                 6677889*****985 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       1.3   2.9e+03      31      58 ..      35      60 ..      21      82 .. 0.54
   2 !   15.0   0.0   8.6e-06     0.019      13      78 ..     161     223 ..     159     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
      AAA_14 31 esilyinldderdkkladpekllelile 58
                 +++ ++l+ e+++k+++   + + + e
  CDO71750.1 35 LDYFMLALKYEKNEKSKTL--IKQKFTE 60
                4566666666666555533..2222222 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.6e-06
      AAA_14  13 vGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 +GK++l+k ++ e       ++ ++  d   k + ++e+l + ++e+++e+k  ++f+DE+  + +
  CDO71750.1 161 TGKSYLAKAVATEAK---GTFFSVSSSDLVSKWQGESERLVRQLFEMARENKPAIIFIDEVDSLAG 223
                 7*********98887...889999988888877778888999999987777999*******98765 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.9   4.4e-05     0.099      28     111 ..      28     116 ..       4     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
        Use1  28 LekyvkaleemleeLkkessk....pskevlkeYsekveaLkllleaeklssteekalanqllapg..eeskeekeeskereeaskelrq 111
                  + y +al+ ++ +Lk e+++      k++ +eY  + e+Lk+ l +++ +  ++ka+  + +a+g    s ++k++++++++++k+lr+
  CDO71750.1  28 YKLYSNALDYFMLALKYEKNEksktLIKQKFTEYLHRAETLKEYLTSKEDK-RAKKAIGANGMANGgsAGSGKKKDDDDDTDPEVKKLRA 116
                 334889999999999999888333344566679**************9999.89999999999988775556666667777777787776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3     3e+03      72      90 ..      47      66 ..      20      80 .. 0.60
   2 ?    8.6   0.6   0.00095       2.1      73     130 ..     192     259 ..     158     266 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
      AAA_22 72 rlsseell.ealeqalrara 90
                + +s+ l+ ++++++l+++ 
  CDO71750.1 47 NEKSKTLIkQKFTEYLHRAE 66
                34445555555555555544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00095
      AAA_22  73 lsseellealeqalraravielliiDEaqhlr.....s.....eealeeLrsllnl.srkgvqliLvGt 130
                 ++se+l+++l + +r+ +  +++ iDE++ l      s      ++ +e+   +n  +++++ +++ G 
  CDO71750.1 192 GESERLVRQLFEMARENKP-AIIFIDEVDSLAgtrneSesegsRRIKTEFLVQMNGvGHDDTGVLVLGA 259
                 4567777888888888888.8999999999876543313233333333333333334556666655555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.03        67      15      33 ..       3      21 ..       1      22 [. 0.87
   2 ?    7.3   2.0    0.0027       5.9      12      30 ..      19      37 ..      13      39 .. 0.84
   3 ?   -2.3   0.1       3.1     7e+03      18      28 ..     138     148 ..     137     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.03
       TPR_2 15 gdyeeAleafekAleldPn 33
                 ++++A+e  ++A+e d  
  CDO71750.1  3 HNLDRAIEIVQRAIEEDKA 21
                699************9976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0027
       TPR_2 12 yklgdyeeAleafekAlel 30
                 k+++yeeA +++  Al +
  CDO71750.1 19 DKANNYEEAYKLYSNALDY 37
                5899************976 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.1
       TPR_2  18 eeAleafekAl 28 
                 e A+e +++A+
  CDO71750.1 138 ESAKESLKEAV 148
                 78999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3075.20
//
Query:       CDO71751.1  [L=575]
Description: hypothetical protein BN946_scf184920.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-53  180.6   0.0    4.6e-53  180.3   0.0    1.1  1  Pkinase      Protein kinase domain
      1e-22   80.7   0.0    1.4e-22   80.3   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    3.6e-05   23.2   0.2    0.00015   21.2   0.2    1.9  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   7.7e-57   4.6e-53       4     264 .]     276     544 ..     273     544 .. 0.86

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 7.7e-57
                 EEEEEEESSEEEEEEEE..TTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   4 leklGeGsfGkVykave..ketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgsls 96 
                 +  +G+G++++V  a++  ++++k +AvK+++k++++++++   kk+++E  i  +l+h n+v+ ++ +++ +++ + v+e+++gg+l  +++ +g +s
  CDO71751.1 276 KVAIGKGATSVVRLAHKwdRSEEKLYAVKEFRKRRKNETEKeyvKKLTAEFCISSTLHHVNVVETVDLVQDeNQHWCEVMEFCPGGDLYAAIK-RGGMS 373
                 567*********9998533778899**********999999999*************************995677889**************7.699** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWslGvilye 189
                 ++e++  +kqil+g++ylHs+g+ HrD+KpeN+++d +g+lKi+D+G ++ ++   +      t  +g++ Y+APE   +++y  + vD+W++G++ y+
  CDO71751.1 374 PSEVECCFKQILTGVAYLHSQGVAHRDIKPENLFFDMHGHLKIGDYGASTVYRLPWEstihmSTGLCGSEPYIAPEQFLGKPYdARLVDIWACGIVYYC 472
                 ***************************************************998777789988889************9****8889************ PP

                 HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 190 lltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.seeakdllkkllkkdpkkRltaeellqhpyl 264
                 l +++ p+   + +++  + +      ++  +  ++   p+ +++ ++ ++ +++k+l+ +pk R  ++++++hp++
  CDO71751.1 473 LHFQELPWTVAQPSDQLFAAYVA---ACN--TpSQSACPPTINNLsPRACRPVIRKMLEPNPKLRSLIDDIIKHPWI 544
                 *********44444422222222...222..222223334444444778999************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0   2.3e-26   1.4e-22       6     237 ..     278     512 ..     273     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 2.3e-26
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE....STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl....keeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkeke 98 
                   +G+Ga + V  ++    ++++e   avK +    k+e+++e  ++l+ e  i ++l+h n+v+ + ++  ++++ + v+e+++gGdL   +++    
   CDO71751.1 278 AIGKGATSVVRLAHKW--DRSEEKLYAVKEFrkrrKNETEKEYVKKLTAEFCISSTLHHVNVVETVDLVQdENQHWCEVMEFCPGGDLYAAIKRG--- 370
                  699***9999998766..5677778899998322133444444788999999******************77777999**************998... PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET..TTSSEEEETTSSTSGGGGS-HHHHHHSEEEHH.HHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi..ekddeyvkkeeaklpvkWmapEslkekkftsk.sDvWsfGv 193
                   ++ +++ ++  q+  G++yL+s+ + Hrd+   N + + + + ki+D+G +       +++ +++++   +  ++apE +  k +  +  D+W+ G+
   CDO71751.1 371 GMSPSEVECCFKQILTGVAYLHSQGVAHRDIKPENLFFDMHGHLKIGDYGASTVYrlPWESTIHMSTGLCGSEPYIAPEQFLGKPYDARlVDIWACGI 468
                  99999999******************************************99877324566778888888999************986539******* PP

                  HHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHHHHH CS
  Pkinase_Tyr 194 llwEiftlgespypgl.kneevleklkegkrlekpekcpeelyel 237
                  + + +    e p++    + ++++++ +  + +  + cp+++++l
   CDO71751.1 469 VYYCLHF-QELPWTVAqPSDQLFAAYVAACNTPSQSACPPTINNL 512
                  *997765.7888877745566777778888888888899988876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   2.6e-08   0.00015     148     255 ..     384     485 ..     372     503 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.6e-08
  Kinase-like 148 llTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve.........kgfaPpEllgsrggytrknktkmthkldaWql 236
                  +lT      +a+L+++g+ h +++++nl++d +g l++g+ +a   +      s++             aP  +lg+            +  +d W+ 
   CDO71751.1 384 ILT-----GVAYLHSQGVAHRDIKPENLFFDMHGHLKIGDYGASTVYRLPWE-STIHmstglcgsePYIAPEQFLGK---------PYDARLVDIWAC 466
                  444.....49*****************************9876444433333.333322123333111222223333.........223345899999 PP

  Kinase-like 237 GlviyriwclklPltlate 255
                  G+v y +   +lP t a++
   CDO71751.1 467 GIVYYCLHFQELPWTVAQP 485
                  9999999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3717.34
//
Query:       CDO71752.1  [L=195]
Description: hypothetical protein BN946_scf184920.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-62  208.7  10.3    3.5e-62  208.7  10.3    1.7  2  Ribosomal_L19e  Ribosomal protein L19e
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.065   13.0   0.0    2.3  2  S4              S4 domain
       0.11   12.7   1.6       0.16   12.2   0.1    2.0  2  FAF             Fantastic Four meristem regulator


Domain annotation for each model (and alignments):
>> Ribosomal_L19e  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7  10.3   5.8e-66   3.5e-62       1     144 []       3     146 ..       3     146 .. 0.99
   2 ?   -1.5   0.9       0.4   2.4e+03      73      90 ..     163     180 ..     147     186 .. 0.43

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 5.8e-66
                     -THHHHHHHHHHTTS-GGGEEE-GGGHHHHHH--SHHHHHHHHHTTSEEE-------THHHHHHHHHHHTT-S-SGGG--S-HHHHS-HHHHHHH CS
  Ribosomal_L19e   1 dlklqkrlaasvlkvGknrvwldpeeleeiaeAitredirklikdglIikkpkkgnsrararerkekkrkgrrrgsGkrkGtkeaRlpekelWik 95 
                     +l++qkrlaasv +vGk+++wldp+e+ ei +A++r++++klikdg Ii kp++++srar+re+ ++krkgr++g+GkrkGt++aR+p+k+lW++
      CDO71752.1   3 NLRSQKRLAASVAGVGKRKIWLDPNEQAEIGNANSRTHVKKLIKDGRIIIKPTTVHSRARTRELLAAKRKGRHTGPGKRKGTADARMPSKVLWMR 97 
                     6899******************************************************************************************* PP

                     HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTT--SSHHHHHHHHT-XX CS
  Ribosomal_L19e  96 riRalRrlLkelrekkkidkktYrelYrkakGgefknkavLkeyiekkk 144
                     r+R+lRrlL+++re++kidk+ Y++lY+k+kG++fknk+vL+eyi+k+k
      CDO71752.1  98 RQRVLRRLLRKYREAGKIDKHLYHSLYQKSKGNVFKNKRVLMEYIHKAK 146
                     **********************************************975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.4
                     S-SGGG--S-HHHHS-HH CS
  Ribosomal_L19e  73 rrgsGkrkGtkeaRlpek 90 
                     r ++   + ++ aR+ ek
      CDO71752.1 163 RVKNKAARERRAARVAEK 180
                     222222233334444444 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.065       9      28 ..      31      50 ..      30      52 .. 0.91
   2 ?   -2.9   0.0      0.98   5.8e+03       3      16 ..     115     128 ..     114     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                HTTSSSSHHHHHHHHHTTTE CS
          S4  9 rlglassrreArqlIehGrV 28
                ++g a sr ++++lI++Gr+
  CDO71752.1 31 EIGNANSRTHVKKLIKDGRI 50
                7899***************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.98
                 HHHHHHHTTSSSSH CS
          S4   3 Ldkvlarlglassr 16 
                 +dk l+ +++ +s+
  CDO71752.1 115 IDKHLYHSLYQKSK 128
                 78999999999986 PP

>> FAF  Fantastic Four meristem regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.7e-05      0.16      13      49 ..      36      74 ..      27      76 .. 0.81
   2 ?   -1.8   0.1      0.64   3.8e+03      16      26 ..     104     114 ..      94     115 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
         FAF 13 spwvllrshredGRLvleevkvpsrhey..lraeRedGR 49
                ++++++++  +dGR +++   v+sr +   l a +++GR
  CDO71752.1 36 NSRTHVKKLIKDGRIIIKPTTVHSRARTreLLAAKRKGR 74
                478999***************999887778556666887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.64
         FAF  16 vllrshredGR 26 
                  llr++re G+
  CDO71752.1 104 RLLRKYREAGK 114
                 46777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1444.29
//
Query:       CDO71753.1  [L=598]
Description: hypothetical protein BN946_scf184920.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-63  213.5   0.0    8.8e-63  211.2   0.0    1.9  2  MOZ_SAS         MOZ/SAS family
    7.1e-18   64.0   3.5    7.2e-09   35.1   0.2    2.7  2  zf-MYST         MYST family zinc finger domain
    4.4e-07   29.7   0.4    1.1e-06   28.4   0.4    1.8  1  Tudor-knot      RNA binding activity-knot of a chromodomain
     0.0016   18.8   0.0     0.0031   17.9   0.0    1.5  1  Acetyltransf_7  Acetyltransferase (GNAT) domain
     0.0031   18.0   0.1      0.008   16.6   0.1    1.7  1  Agenet          Agenet domain
     0.0036   17.5   0.0     0.0075   16.5   0.0    1.5  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.2   0.0   2.9e-66   8.8e-63       1     141 [.     267     407 ..     267     437 .. 0.95
   2 ?   -0.5   0.0      0.28   8.4e+02     146     176 ..     508     538 ..     488     541 .. 0.85

  Alignments for each domain:
  == domain 1  score: 211.2 bits;  conditional E-value: 2.9e-66
     MOZ_SAS   1 ppGkeiYrkeklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegahivGyFskekesaeeynlaCilvlPpyqrkgyGklli 99 
                 ppG+++Y++    ++evdG+keklycqnL+l+ klF+d ktl++d ++F+fY+lt ad++  h++G+Fskek s ++ynlaCi+vlPpyq+kgyG+lli
  CDO71753.1 267 PPGRKVYQRGAHIIWEVDGAKEKLYCQNLSLFGKLFIDIKTLFFDCDNFMFYILTDADSQRDHVLGFFSKEKVSYDDYNLACIVVLPPYQKKGYGMLLI 365
                 8************************************************************************************************** PP

     MOZ_SAS 100 efsYeLskrekkigtPekPlsdlgllsyrsywkeeilellke 141
                 efsYeLs+r +k+gtPe+Plsdlgl sy +yw +++++++++
  CDO71753.1 366 EFSYELSRRAGKVGTPERPLSDLGLRSYLTYWISTLVRFFRR 407
                 ************************************998875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.28
     MOZ_SAS 146 kisieeisektgikeeDiistleelkllkya 176
                 ++++ +i+++t ++ eD   +l+e+ ll ++
  CDO71753.1 508 RCTLVDIARATNLRVEDAAFALNECGLLIRR 538
                 578899*****************99887655 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.2   2.4e-12   7.2e-09       2      25 ..     159     182 ..     158     190 .. 0.85
   2 !   28.9   0.4   2.2e-10   6.5e-07      28      55 .]     235     262 ..     231     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.4e-12
     zf-MYST   2 kniekieiGeyeiktWYfSpYPee 25 
                 +n++k+ +G+++iktWYfSpYP  
  CDO71753.1 159 RNFDKVIFGRWQIKTWYFSPYPLS 182
                 8*********************53 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2.2e-10
     zf-MYST  28 nkekLyvCefClkYmksakelerHkkkC 55 
                 + ++L+vC++C+kYm++  + e H kkC
  CDO71753.1 235 QHSTLWVCDRCFKYMAEGLSWELHVKKC 262
                 6789************************ PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.4   3.8e-10   1.1e-06      16      52 ..      47      79 ..      14      82 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.8e-10
                EEEEEEEEEEETSSCEEEEEEETTS-CCC-EEEETTT CS
  Tudor-knot 16 lrkAeilsirekkgkyeYYVHYeefNkRlDeWVsaer 52
                +++A +l+++      + YVHY++ +kR+DeWVs+ +
  CDO71753.1 47 TEQASVLEKHD----DDVYVHYVNTDKRMDEWVSQCD 79
                44455555544....457***************9866 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0031      12      49 ..     328     373 ..     313     408 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                     TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.....T CS
  Acetyltransf_7  12 gkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.....a 49 
                     + ++Gf + + ++   +++ +++V+p y++kG+G  L+e+     +
      CDO71753.1 328 DHVLGFFSKEKVSyddYNLACIVVLPPYQKKGYGMLLIEFsyelsR 373
                     666676654444465455666******************8544431 PP

>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.7e-06     0.008      20      59 ..      50      83 ..      49      85 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.7e-06
      Agenet 20 AtilkvkegdkylVeYddlddddgskpleEwvdasdiRPl 59
                A +l++ ++d ++V Y +     ++k++ Ewv+ +d+RP 
  CDO71753.1 50 ASVLEK-HDDDVYVHYVN-----TDKRMDEWVSQCDVRPA 83
                789999.899********.....****************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.5e-06    0.0075      29      93 ..     310     376 ..     285     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.5e-06
                     HSTTCEEEEEEET.....TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTT CS
  Acetyltransf_1  29 sleaegllvaeed.....geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareeg 93 
                     ++ +++ + ++ d     + ++Gf s  k+     + + +  ++V p y++kG+G +L+e   e  r+ g
      CDO71753.1 310 FDCDNFMFYILTDadsqrDHVLGFFSKEKVSY---DDYNLACIVVLPPYQKKGYGMLLIEFSYELSRRAG 376
                     44444333333334455677888887777766...8899999******************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4268.95
//
Query:       CDO71754.1  [L=519]
Description: hypothetical protein BN946_scf184920.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3908.59
//
Query:       CDO71755.1  [L=639]
Description: hypothetical protein BN946_scf184920.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-31  108.4   0.0      5e-23   81.8   0.0    2.1  2  Pkinase      Protein kinase domain
    1.2e-15   57.5   0.0    6.4e-15   55.1   0.0    1.8  2  Pkinase_Tyr  Protein tyrosine kinase
    0.00063   19.1   0.0    0.00097   18.5   0.0    1.3  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.19   11.7   0.1       0.59   10.1   0.1    1.8  1  YjhX_toxin   Putative toxin of bacterial toxin-antitoxin pair


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.2e-09   5.6e-06       2      76 ..      26     104 ..      25     106 .. 0.91
   2 !   81.8   0.0   1.1e-26     5e-23     107     264 .]     105     260 ..     103     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.2e-09
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEE CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk...hpnivrlyevfeekdelylv 76 
                 e +++l +G+ G+V+ a++++++ki+ vK i+k   + ++   ++++E kil+ l     p++v+l+ +fe+++ +ylv
  CDO71755.1  26 EYIRTLNTGEAGEVIIARRADNEKIYTVKLIRKAGWNGSTLaARIRSEQKILRVLTecsVPFVVKLFWSFEDERAMYLV 104
                 66788999*************************9988877779*******9998877779*****************99 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 1.1e-26
                 HHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 107 ilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk......ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsg 199
                 ++eg++ lH++g++H  l pe iLi  +g+l i+ F+ a+ l  + +       +  +   eY+APE++ + ey+ +vD+Ws G++l+ ++tg++pf +
  CDO71755.1 105 VVEGISNLHAHGMVHTNLRPESILIGMDGHLIISGFDDATFLYDDVEqtmnhrPKMSTNQIEYRAPELILGWEYDYAVDWWSFGLLLWWMFTGTHPFVQ 203
                 89*****************************************999999998888888899*************************************5 PP

                 SSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 200 ekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 e++++ + ++l+   k++++     + ++ +  ++e+a +l++++l+++p  R+    ++ h+y+
  CDO71755.1 204 ESDED-HLSILQS--KLIHV-----KLSEDRLGMNEDAYQLITRCLQRNPALRIDGVAAKMHSYF 260
                 54444.4444444..22222.....345667778*********************9999999998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.027   1.2e+02       3      80 ..      27     105 ..      25     106 .. 0.64
   2 !   55.1   0.0   1.4e-18   6.4e-15     106     250 ..      99     249 ..      90     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.027
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEE CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateee.keelleeakimkkl...khpnivkllgvctkeepllivt 80 
                  + ++l  G+ G+V+ ++      ++e    vK + k++ + ++  +++ +e ki++ l   + p +vkl     +e+ +++v+
   CDO71755.1  27 YIRTLNTGEAGEVIIARRA----DNEKIYTVKLIrKAGWNGSTlAARIRSEQKILRVLtecSVPFVVKLFWSFEDERAMYLVV 105
                  678999*********9999....444445566662333333332455666666555442227888999988888888888775 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 1.4e-18
                  HHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 106 lsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEift 200
                    + l v +G++ L+++ +vH +l+   +L+  + +  is f  a  +++d e+   ++ + ++  +++ apE +   ++  + D WsfG llw +ft
   CDO71755.1  99 RAMYLVVVEGISNLHAHGMVHTNLRPESILIGMDGHLIISGFDDATFLYDDVEQtmnHRPKMSTNQIEYRAPELILGWEYDYAVDWWSFGLLLWWMFT 196
                  56778899*********************************998777776666522244455667899****************************** PP

                  TSSGTTTTSHHHHHHHHHHTT....EES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 201 lgespypglkneevleklkeg....krlekpekcpeelyelmkkcweedpeeRp 250
                   g +p+ + ++e+ l+ l+++    k  e    ++e+ y+l+++c++++p+ R 
   CDO71755.1 197 -GTHPFVQESDEDHLSILQSKlihvKLSEDRLGMNEDAYQLITRCLQRNPALRI 249
                  .******9999998877765511114456677899***************9886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.2e-07   0.00097     153     258 ..     105     209 ..      95     248 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.2e-07
  Kinase-like 153 lirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekg..faPpEllgsrggytrknkt...kmthkldaWqlGlviyriwc 245
                  ++  + nL+a+g+vh++++++++l   +g l++ gf+      +      ve++  + P+  + ++  y+  +     ++ +++d W  Gl  +++  
   CDO71755.1 105 VVEGISNLHAHGMVHTNLRPESILIGMDGHLIISGFDDATFLYD-----DVEQTmnHRPKMST-NQIEYRAPELIlgwEYDYAVDWWSFGLLLWWMFT 196
                  567789*****************************976433333.....33333003333333.334466644322227999**************** PP

  Kinase-like 246 lklPltlateeak 258
                   + P+ +  +e +
   CDO71755.1 197 GTHPFVQESDEDH 209
                  ****988776655 PP

>> YjhX_toxin  Putative toxin of bacterial toxin-antitoxin pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00013      0.59       9      47 ..      29      67 ..      21      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
  YjhX_toxin  9 rvLhvLaqGgrielerdekgkitevecvtreGwllsdld 47
                r+L++   G  i  +r++++ki +v+++ + Gw  s l 
  CDO71755.1 29 RTLNTGEAGEVIIARRADNEKIYTVKLIRKAGWNGSTLA 67
                8888889999***********************877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4717.06
//
Query:       CDO71756.1  [L=564]
Description: hypothetical protein BN946_scf184920.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-08   33.0   0.3    7.4e-08   32.2   0.3    1.4  1  F-box-like     F-box-like
    1.2e-06   28.3   0.1    1.7e-06   27.7   0.1    1.3  1  F-box          F-box domain
  ------ inclusion threshold ------
        4.4    5.6   5.3        1.3    7.3   2.0    1.7  2  DUF1631        Protein of unknown function (DUF1631)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.3   1.2e-11   7.4e-08       5      43 ..     409     446 ..     406     451 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.2e-11
  F-box-like   5 PdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWr 43 
                 P+++  +IFs+L+ +dL+r+++V++rW+r    + ++W 
  CDO71756.1 409 PTDVSQRIFSQLSIRDLARCSRVSKRWNRSQTLN-YVWF 446
                 999*************************986554.6765 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   2.9e-10   1.7e-06       6      35 ..     408     437 ..     403     450 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.9e-10
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwri 35 
                  P +v   I+++L+ +dl +++rVSk+w++
  CDO71756.1 408 FPTDVSQRIFSQLSIRDLARCSRVSKRWNR 437
                 6999************************97 PP

>> DUF1631  Protein of unknown function (DUF1631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.0   0.00022       1.3     208     293 ..      15     119 ..      13     171 .. 0.70
   2 ?   -1.5   0.1       0.1   6.3e+02     321     363 ..     320     360 ..     289     392 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00022
     DUF1631 208 Pelkaapr...................arqsrrasasaagaaeekeeeqkaPaaaaaaaagaaeaqasaaaaaegaaelfsaLqqLLsqareaaaaaaq 287
                 P l++a++                   a+q+++a +++++  +++ +++++ a+a+aa++ + +a+asa   ++++++ +  Lq+++++  e+ ++++ 
  CDO71756.1  15 PVLVQAKPfgfqggignqgqqtkggnnAGQAAKAGNQNQNTGKGGAAASASAASASAAPPASVSAAASAGTGSNDPQSSLTLLQSVIATGFENDGQDQP 113
                 555555555555555555555555555666666666666666677777777777777777666666666666777777**************9999988 PP

     DUF1631 288 aassas 293
                 +a++  
  CDO71756.1 114 TAGQVP 119
                 887633 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.1
     DUF1631 321 aagaeasvedlreqllnllrqesgeaaaqalgqededvidlVa 363
                 +++a+as +++++ql  +++ + ++++    +++d+++i++V+
  CDO71756.1 320 SSAAAASTAAADKQLGAQTNGRITPSG--ERDDSDDELINVVS 360
                 444555555556666666666666665..67777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4267.20
//
Query:       CDO71757.1  [L=263]
Description: hypothetical protein BN946_scf184920.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-07   31.8   0.3    8.2e-05   22.9   0.3    2.3  2  SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase co


Domain annotation for each model (and alignments):
>> SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase complex subunit SAP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00055       9.8       1      15 [.     118     132 ..     118     139 .. 0.88
   2 !   22.9   0.3   4.6e-09   8.2e-05      27      53 ..     221     247 ..     220     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00055
  SAP30_Sin3_bdg   1 LqlntLrrYkrhykl 15 
                     L++++L rY +h++l
      CDO71757.1 118 LPTDALHRYLAHFDL 132
                     789***********9 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 4.6e-09
  SAP30_Sin3_bdg  27 LaeaVarHFkaqpvdEkevitsFlyav 53 
                     La++ +rHF++q+v+E +++++F++av
      CDO71757.1 221 LAAIAERHFREQEVKEVDTLAAFMCAV 247
                     88999********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2146.62
//
Query:       CDO71758.1  [L=544]
Description: hypothetical protein BN946_scf184920.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-16   59.8   7.4    6.7e-05   23.4   0.2    3.8  4  Sel1      Sel1 repeat
  ------ inclusion threshold ------
       0.89    9.8   5.5       0.67   10.2   0.2    3.2  3  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   1.2e+04      30      36 ..     393     399 ..     393     400 .. 0.84
   2 !   16.2   0.2   1.4e-06     0.012       4      36 ..     409     437 ..     405     439 .. 0.83
   3 !   22.7   0.1   1.2e-08   0.00011       3      38 .]     461     494 ..     459     494 .. 0.94
   4 !   23.4   0.2   7.5e-09   6.7e-05       1      37 [.     495     529 ..     495     530 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
        Sel1  30 yekAAeq 36 
                 +ekAA +
  CDO71758.1 393 FEKAATL 399
                 8****87 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.4e-06
        Sel1   4 myrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 m+ L+  +   +G g pk +  +++w+++AAe+
  CDO71758.1 409 MWGLA--Q--RHGWGCPKSEVAGFRWLRRAAEL 437
                 34444..6..9999*****************97 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 1.2e-08
        Sel1   3 AmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 A y +G  + ++ G gv+kD+e A+++++ AA++Gd
  CDO71758.1 461 AIYEVG--QSFYRGWGVEKDKEMAVQYFRVAARLGD 494
                 89****..8889**********************97 PP

  == domain 4  score: 23.4 bits;  conditional E-value: 7.5e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 ++A+  L+   ++lnG+g +kD+++  +wy+ A +qG
  CDO71758.1 495 PDAQQELA--FCLLNGKGCKKDKRESAKWYRAAVAQG 529
                 68999***..999*********************999 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   7.4e-05      0.67       4      31 ..     373     400 ..     370     403 .. 0.90
   2 ?   -0.5   0.0       0.2   1.8e+03      15      30 ..     477     492 ..     476     494 .. 0.86
   3 ?   -0.5   0.2       0.2   1.8e+03      15      29 ..     513     527 ..     511     528 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.4e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 + +lG  +   ++++e ++afekA  l+
  CDO71758.1 373 YLQLGIQHHLENRLAESAAAFEKAATLN 400
                 7899*********************998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.2
       TPR_2  15 gdyeeAleafekAlel 30 
                 +d e A+++f+ A +l
  CDO71758.1 477 KDKEMAVQYFRVAARL 492
                 68899*****999876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.2
       TPR_2  15 gdyeeAleafekAle 29 
                 +d  e ++++++A++
  CDO71758.1 513 KDKRESAKWYRAAVA 527
                 788999*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4122.37
//
Query:       CDO71759.1  [L=420]
Description: hypothetical protein BN946_scf184920.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-14   53.8   0.2    5.7e-14   52.6   0.2    1.6  1  PBP             Phosphatidylethanolamine-binding protein
  ------ inclusion threshold ------
      0.037   14.8   1.1       0.08   13.7   1.1    1.5  1  NAM-associated  No apical meristem-associated C-terminal doma


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.2   6.4e-18   5.7e-14      11     102 ..     250     342 ..     235     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 6.4e-18
                 GS..-EEEEES--TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTCEE-B-TTSS......CCCCS---B--STTS..EEEEEEEE. CS
         PBP  11 ts..PplswsdvpegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpegavqgknslge......esesgYlgpcPpkgdgkHrYvflly. 96 
                 t   P++ ++ +  +t+ y+l+++D+D+p+ ++ +    lHw++ nip s+ +                    ++++ Y++p P+ g++ HrYv+l+  
  CDO71759.1 250 TRrlPEIYTTLFHTDTRLYTLLMVDLDVPNPETrSfttCLHWMQPNIPLSAFT-------------PapavplNTHTRYIPPHPQRGTPYHRYVILVLp 335
                 334799999999999*************7555452457**********33222.............112233355679**********99*******96 PP

                 .EESSSG CS
         PBP  97 .aldvea 102
                  a  ++ 
  CDO71759.1 336 qASATKP 342
                 5433333 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.1   8.9e-06      0.08      35     145 ..      34     147 ..       4     157 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.9e-06
  NAM-associated  35 assspatsssestdeedssesssesseesaadsestsssrlkRPiGkkkaKekrke.........askdeealeklasaqkkiakkskekkeeae 120
                     +   p++  s+ t++++++es++    ++a+ ++s++s++++   G+k+a +  ke         +   + al+++++ +k ++k+ +e + ++e
      CDO71759.1  34 P---PTPPASSVTAHSSTAESKH---AQNASGASSAQSQQSQSGSGRKAAPQTPKEwcrpiakgvEPAYDYALKYILKDSKFLKKELEELRAAVE 122
                     2...2222221222112233332...334455566666667888888888888888888899899666789999999999999999999998888 PP

  NAM-associated 121 leekkldieeekveaeqrqaeeeIm 145
                     +eekk + e+++ + + +++   I+
      CDO71759.1 123 AEEKKPEGERDEGALQDMRERVGIL 147
                     8888888887777666666666565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2843.86
//
Query:       CDO71760.1  [L=105]
Description: hypothetical protein BN946_scf184920.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   46.1   0.8    5.3e-12   45.7   0.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.8     3e-16   5.3e-12      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO71760.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 788.29
//
Query:       CDO71761.1  [L=500]
Description: hypothetical protein BN946_scf184920.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-49  168.7   0.0    4.8e-49  167.3   0.0    1.6  2  Peptidase_S28  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0   2.7e-53   4.8e-49       1     323 [.      62     387 ..      62     404 .. 0.79
   2 ?   -1.3   0.0     0.039   7.1e+02     368     391 ..     408     430 ..     392     478 .. 0.80

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 2.7e-53
  Peptidase_S28   1 qklDhFdasnkrtfqqryfvndqfyknggpiflyiGgegslsasw..vsngeilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsseqaLa 94 
                    q+lDhF ++   tf+qry++nd +yk ggp+ ++  geg+ +++     +g +  lA++ ++l + lEHR+YG+S+Pv++ +t +lr l+ eqa a
     CDO71761.1  62 QPLDHFVDT-GFTFEQRYWLNDRHYKPGGPVIVFEAGEGPGDERMpiLDTGIVDILANATNGLGIVLEHRYYGESVPVQNFTTDSLRWLNNEQAAA 156
                    89****875.689**************************98877521445577779**************************************** PP

  Peptidase_S28  95 Dlasfikalk.qkfk...lsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvage.cakaveqgfaevee 185
                    D a+fi  ++   +    ++  ++wi +GgSY+g+ aa +r +yP+lv+ga++SS+ ++a++d + y++++     ++a+  c+++ve+ + ev++
     CDO71761.1 157 DSANFIDNVTfPTIPgdlTAPGTAWIYYGGSYGGARAAHMRGLYPHLVFGAISSSGVVHATLDDWRYFDIIR----QYAPAhCIAQVEKTIFEVDR 248
                    ********9954444222578899*********************************************986....566655************** PP

  Peptidase_S28 186 llktkegrqalkeelqlcskldek.tdkdvakffsniasefqgvvqysydgkanaalsaisikelCklll....na.sktdlilrvevliqlfksl 275
                    l+ + +++   ++++++ + l++   d d+a + s   s+ q       d++   a  ++   + C+ l      +  +++ i++ +++++  k++
     CDO71761.1 249 LITSPSAK--TRKAIKAVFGLQNLtYDPDFASLLSDPLSAWQ-------DNNWDPAVGSTAFAQFCDALGppdhATvHTEQGITVSNATFNYAKYI 335
                    **999854..45677777777776467788876665555544.......34444444556789999999855432223335555556666666666 PP

  Peptidase_S28 276 nqk.slnlstadisyqlanaekkdssles...laddrqWlyqtCtEfgfyqt 323
                    + + +++++  +++ +++ +   ++ + +    +  r W +q Ct  gf+++
     CDO71761.1 336 KSQyVASCTPPQTQDECFGTITAKDFYLQtdlSQTWRLWSFQVCTQWGFFMA 387
                    655577777777777777775555544443557889*************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.039
  Peptidase_S28 368 YGgadnpkatnvvfvnGalDPWha 391
                     Gg  n+  ++   ++G+ DPW+ 
     CDO71761.1 408 LGG-YNIAYDRLAIIDGQWDPWRG 430
                    566.77888889999*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3486.69
//
Query:       CDO71762.1  [L=1527]
Description: hypothetical protein BN946_scf184920.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.4e-131  437.4   0.2   1.3e-130  436.2   0.2    1.7  1  DNA_topoisoIV   DNA gyrase/topoisomerase IV, subunit A
    1.2e-50  171.1   0.7    1.2e-50  171.1   0.7    2.5  2  TOPRIM_C        C-terminal associated domain of TOPRIM
    7.5e-29  100.4   0.4    1.8e-28   99.2   0.4    1.7  1  DNA_gyraseB     DNA gyrase B
    2.6e-13   50.5   0.4    7.2e-13   49.0   0.1    2.0  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    4.3e-08   33.3   0.0    1.4e-07   31.7   0.0    1.9  1  Toprim          Toprim domain
  ------ inclusion threshold ------
       0.05   14.1   0.1        8.5    7.0   0.1    3.2  2  EF-G-binding_N  Elongation factor G-binding protein, N-termin


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.2   0.2  4.3e-134  1.3e-130       1     426 []     770    1215 ..     770    1215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 436.2 bits;  conditional E-value: 4.3e-134
  DNA_topoisoIV    1 RaiPsvrDGlKPvqRriLyamfkllnldkkekKvaqlvGev..lgkYhPHGdaslydaivrlaqdfvg..niplldpqGnfGsildgdkd.Aaa 89  
                     R+iPsv DGlKP+qR++++++fk +nl kke+KvaqlvG+v  +++Yh HG+asl+ +i++laqdfvg  n++ll+p+G+fG++ +g+kd Aaa
     CDO71762.1  770 RSIPSVADGLKPGQRKVIWSCFK-RNL-KKEIKVAQLVGYVseVSAYH-HGEASLMATIINLAQDFVGsnNMNLLMPNGQFGTRDQGGKDhAAA 860 
                     9**********************.999.********************.********************************************* PP

  DNA_topoisoIV   90 RYietrLskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeeaellelvlgPdf 183 
                     RYi+t+L++i r++++++d+ +++yq++ Dg+ +EPe+++piiP++LvnGaeGI++G++t+ip++n+++i++++ +l++g+e+    +++ P++
     CDO71762.1  861 RYIFTELAPIIRNVMHPADDAILTYQQD-DGRAVEPEWYMPIIPMVLVNGAEGIGTGWSTTIPSYNPEDIVANIYRLMDGQEQ----VPMLPWW 949 
                     ****************************.****************************************************77....79***** PP

  DNA_topoisoIV  184 ptgggiigkeeikeayetgrGkikvrakveieektivitElPigvntskliekieelv.kkkkikisdirdesdr.gvrivielkrgaseekvl 275 
                     ++++g i+k +  ++y+   G+i+  ++     +ti+itElPi+++t++++ ++e++  +k+     d++++ ++ +v++vi+++++ +e+ ++
     CDO71762.1  950 RGFTGSIKKVG-DNKYDVI-GTITKVDD-----TTIEITELPIHKWTQNFKAELEAMCgEKGDGL--DYKEYHNNmNVHFVITMNEKGMEQAEK 1034
                     *******8887.9999999.99998888.....48***********************6665666..9****7777**********99999999 PP

  DNA_topoisoIV  276 eklykktkLessisvnnlvlfdk.k..pkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskk.ekkak 365 
                     + +++++kL+++i++ n+v+fd  +  +ky s++ei+++f+  rl +y++rk++l ++l+ +l++l+      n++++v+++++k++  ++++k
     CDO71762.1 1035 QGFHEFFKLTTKINTGNMVCFDFdGkiKKYNSAEEIIEDFYPKRLAYYQKRKDFLANELQLQLDRLN------NQARFVKMIVDKELIvANRKK 1122
                     99******************9985479****************************************......***************9***** PP

  DNA_topoisoIV  366 keLieelse..................................eqaeyllemrlrrLtkeeveklekeieelekeikelekllaklkklikeel 425 
                     +++++el++                                  ++++yll m +++Ltke++ekl ++ +e+e+e+ +l +l++   ++++++l
     CDO71762.1 1123 ADIVAELRRkqfrpfpkvvkakvhgeiedaaededsgeeegnlSDYDYLLGMAIWSLTKEKIEKLLSQAKEKETELLTLLELTPI--QIWRTDL 1214
                     *******999*********************************99****************************************..***9998 PP

  DNA_topoisoIV  426 d 426 
                     d
     CDO71762.1 1215 D 1215
                     6 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.7     4e-54   1.2e-50       1     128 []     642     768 ..     642     768 .. 0.99
   2 ?   -3.2   1.9       3.2   9.6e+03      76     121 ..    1069    1116 ..    1007    1120 .. 0.44

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 4e-54
    TOPRIM_C   1 FitPivkvtkkkkeeisffslpeyeewkestenlkkwkikYYkGLgtstskeakeyfsnldkhlkefkleeeedkeaielaFskkkaderkewlkklep 99 
                 FitP+v+v+k+k ++i+f+++peye w e+t++++kw++kY+kGLgts++++a+eyf+++++h++ f+++++ d+e+ielaFskkkad+rkewl++++p
  CDO71762.1 642 FITPVVRVWKGK-QVINFYTIPEYEMWLEATPDSNKWEHKYFKGLGTSKDEDAREYFRDMKRHMIPFSTTRDGDRELIELAFSKKKADDRKEWLRQFKP 739
                 9********987.9************************************************************************************* PP

    TOPRIM_C 100 gtyldkkkkkisysdFvnkeLilfsmadn 128
                 gt+ld+++++i++ dF+n+eLilfsmadn
  CDO71762.1 740 GTFLDHTQQEIPLADFINRELILFSMADN 768
                 ****************************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.2
    TOPRIM_C   76 eaielaFskkka..derkewlkklepgtyld.kkkkkisysdFvnkeLi 121 
                  e ie  + k+ a  ++rk++l++  +  +ld  ++++  ++  v+keLi
  CDO71762.1 1069 EIIEDFYPKRLAyyQKRKDFLANELQ-LQLDrLNNQARFVKMIVDKELI 1116
                  33333333322222566666666444.3445233333344555666666 PP

>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.4   6.1e-32   1.8e-28       2     168 ..     332     497 ..     331     502 .. 0.79

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 6.1e-32
  DNA_gyraseB   2 lkdfveelnkdk.kelikevlsvegekav.......eev...ievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkk 88 
                  +k++ve   ++  +       + +g  a+       e+    +ev++a+   s+ s +++sF+N+i t++GGtHv++++++l k+l + ++kk++   
   CDO71762.1 332 FKQYVELFLNSAaQDA----ADASGGAAPvkpsiiyEQIgtrWEVAFAV---SDGSFQQVSFANSICTSKGGTHVNHIADQLAKALITSISKKNK--- 419
                  5677776555521222....22222221222233332223237777777...55555***********************************986... PP

  DNA_gyraseB  89 keekisgediregltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaa 168
                   +++i++ +i+++++++v+  i++p+F++QTKe+L+ +++k   + ++se + +++ + +++++ +l++a+ +a++++++
   CDO71762.1 420 -AATIKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKFGTRPTLSEDFMKKVAK-SSIVDHVLNWAKFKADQQLKK 497
                  .459******************************************************.9***************99965 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   2.4e-16   7.2e-13       4     111 ..     143     289 ..     140     290 .. 0.74
   2 ?   -2.6   0.0       2.5   7.6e+03      36      63 ..    1016    1042 ..     972    1052 .. 0.65

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.4e-16
                 HHHHHHHHHHHHHHHHH...HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT........GTCSTTCH.....HCSTCHTSTSSSHHHHHHHH.HH CS
   HATPase_c   4 krLrqiisnlvdNavkf...atkageieveikaseddlvisveDnGiGipkedlk........klfekfsq.....ddstkrggggtGlGlsivkk.lv 85 
                 +++ +i+++++ Na+++    +++++i+v+i+  e +++isv +nG+Gip e++         ++f+++ +     dd++k +gg++G+G+++++   +
  CDO71762.1 143 PGFFKIVDEILVNAADNkinDPTMDTIKVNID-VE-NNTISVYNNGRGIPIEMHSkekiyipeLIFGHLLSssnydDDEKKLTGGRNGYGAKLANIyST 239
                 5788999999999999977666999*******.44.9**************************99995555588988999999***********66333 PP

                 HH.......................TT.TEEEEEEETTTEEEEEEEEESS CS
   HATPase_c  86 el.......................mg.GeiwvesepgrGttftftlple 111
                 e                        mg  +i+ + + ++ t++tf+++l+
  CDO71762.1 240 EFtidtadknsgqkyvqtwtnnmskMGkAKITKNGRGEEYTKVTFKPDLK 289
                 32344444444444444444443335523444444446688999999885 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                  TEEEEEEEESSSSSTTHHHTGTCSTTCH CS
   HATPase_c   36 ddlvisveDnGiGipkedlkklfekfsq 63  
                  +++++ ++ n +G+ +++ +  f  f +
  CDO71762.1 1016 MNVHFVITMNEKGMEQAEKQG-FHEFFK 1042
                  788899999999999877773.333333 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   4.5e-11   1.4e-07       2      88 ..     528     626 ..     527     642 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.5e-11
                 EEEESSHHHHHHHHHTHT...STEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH......HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT CS
      Toprim   2 lvivEgpsdaktiakalg...sgfqavtaslGhildlet.efkpvye..eiedkkkvlka......lkelakradeiilatDpDreGeaiawellevlk 88 
                 l++ Eg+s+ + +   lg   ++++ v++++G++l++ + + +++++  ei+++kk+l+        + + +r+ +++l+tD D +G++i+ +l+++l+
  CDO71762.1 528 LILTEGDSARALAIAGLGvvgRDNFGVFPLRGKLLNVRDaKHDQIMKneEIQNIKKILGLqhnkeyTDINTLRYGRLMLMTDQDHDGSHIKGLLINYLD 626
                 899999996444444446777******************64444444777777777777777777799999************************8876 PP

>> EF-G-binding_N  Elongation factor G-binding protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.041   1.2e+02      53      82 ..     679     707 ..     665     708 .. 0.74
   2 ?    7.0   0.1    0.0028       8.5      35      76 ..    1178    1222 ..    1174    1228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.041
  EF-G-binding_N  53 kelLeqiddiktkekaeklLeeLkeyVipF 82 
                      ++++ + +  + e+a ++++++k + ipF
      CDO71762.1 679 HKYFKGLGTS-KDEDAREYFRDMKRHMIPF 707
                     5555555444.5689*************** PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0028
  EF-G-binding_N   35 alaaekIlelfpelseeqkelLe..qiddik.tkekaeklLeeLk 76  
                      +l++ekI++l+++++e+++elL+  +++ i+  +++ + +Le+ k
      CDO71762.1 1178 SLTKEKIEKLLSQAKEKETELLTllELTPIQiWRTDLDAFLEQWK 1222
                      799***************999852256677777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 9350.63
//
Query:       CDO71763.1  [L=102]
Description: hypothetical protein BN946_scf184920.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.4   0.1      0.019   15.2   0.1    1.1  1  CTU2      Cytoplasmic tRNA 2-thiolation protein 2


Domain annotation for each model (and alignments):
>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1     1e-06     0.019      43      84 ..      44      85 ..      19      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-06
        CTU2 43 etsekCalCglplddkakewkrtitiselseteseeekeele 84
                 +s++C+ C ++   ++++w+++++i+++ e+++++++e+ +
  CDO71763.1 44 PESQECPACAAEQALDEQAWSAALAIQQQVEEAEKQRPETAQ 85
                4789**************************999999976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 719.97
//
Query:       CDO71764.1  [L=101]
Description: hypothetical protein BN946_scf184920.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-07   30.8   0.0    2.1e-07   30.5   0.0    1.1  1  LSM       LSM domain
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.15   12.2   0.0    1.2  1  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.3e-11   2.1e-07       2      47 ..      24      69 ..      23      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.3e-11
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk 47
                +l+ +++++++v  ++gr ++Gt+ g D+++N+ L  + e++ +++
  CDO71764.1 24 KLQGMLKQTLRVTVTDGRIFIGTFAGTDKQLNILLISTDEYRVGPD 69
                689999************************************9987 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05      0.15      15      48 ..      32      63 ..      25      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
                EEEEEETTS-EEEEEEEEE-T..T--EEEEEEEE CS
      SM-ATX 15 evevtvknGevyeGifstvslekdfsvvLkmark 48
                + +vtv++G ++ G f +++   ++++ L  + +
  CDO71764.1 32 TLRVTVTDGRIFIGTFAGTDK--QLNILLISTDE 63
                568******************..99999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 731.44
//
Query:       CDO71765.1  [L=320]
Description: hypothetical protein BN946_scf184920.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-29  102.3   0.0    3.5e-29  102.0   0.0    1.1  1  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   1.9e-33   3.5e-29       2     154 ..      62     269 ..      61     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 1.9e-33
                 EEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-C......HHHHHCH-B-SS......SSSST....... CS
     UPF0052   2 vvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidder......lleeLfqyRfkg......dgdla....... 81 
                 vv++GGtG +++ +++ ++     ++++v+Ddggss+e++r+lg++ igDir++lv+li   +      ++++L++yR+++                  
  CDO71765.1  62 VVISGGTGCNSICSAFGRA---ACYILPVSDDGGSSSEIIRVLGGPSIGDIRSRLVRLIPPADpsspleAIRNLLAYRLPAmytereA---Rdewreiv 154
                 9************999776...579*********************************776666778999**********99986550...24555566 PP

                 ........................................T-BHHHHHHHHHHHHHS-HHHHHHHHHHHTT-SSEEEES..-SS--EEEEEETTS-EEE CS
     UPF0052  82 ........................................ghslgnllLaalaeltgsleeaiealskilkvrgrvlPa..tddpvelsaeledGeeit 138
                                                         + s+gn +L+a ++ + sl +ai + s+i + ++++lP+  t+++v++ aele+Ge + 
  CDO71765.1 155 egrsklwtgipndrkemlrgflvyfeseilkrahknfsfvNGSIGNYFLSASQAFFRSLPSAIFLFSSITNSQANILPVivTNHTVTIAAELENGERLV 253
                 6777778888888888889999999999999999999999***********888889****************************************** PP

                 STTTGGGG-S...-EE CS
     UPF0052 139 geskisearklkapik 154
                 g+ +is+  +++++i+
  CDO71765.1 254 GQCEISHPVRQEPRID 269
                 *****55533344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2197.17
//
Query:       CDO71766.1  [L=250]
Description: hypothetical protein BN946_scf184920.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-70  235.0   0.0      1e-69  234.7   0.0    1.0  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7   0.0   5.9e-74     1e-69       1     177 [.       8     222 ..       8     232 .. 0.94

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 5.9e-74
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTSBE- CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeikevpR 94 
                      +rvtt+GeSh++++ga+idg+p+gl+l ++d+q++L+rRrpgqs+ltt+r+EkD v++ sG+++g+tlGtpi ll++N+dqr+kdy+e++ +pR
       CDO71766.1   8 FRVTTYGESHCASVGAIIDGCPPGLPLVAQDVQTQLSRRRPGQSNLTTPRDEKDLVHLQSGIEHGVTLGTPIGLLVRNEDQRPKDYSETDLYPR 101
                      89************************************************************99****************************** PP

                      TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE.................................. CS
  Chorismate_synt  95 pgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.lgieivayvssigei.................................. 153
                      p+HAD+ty +kYg+++++gggrsSaReT++rvaaGa+a+k+Lk  +gieiva+vss+g++                                  
       CDO71766.1 102 PSHADWTYLEKYGVKASSGGGRSSARETIGRVAAGAIAEKYLKLaYGIEIVAFVSSVGKVslpsavsppsqvpegeddvvedalspefvellrt 195
                      *******************************************978************888888888888899999999999999999999999 PP

                      ...CHHHHHTT-BS-CCCHHHHHHHHH CS
  Chorismate_synt 154 ...ekeaenpvrcpdeeaaeemeeaie 177
                         ek  ++p+rcp++e++e+m ++ +
       CDO71766.1 196 vtrEKVDAQPTRCPHAETSERMVKTAS 222
                      985444677*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1755.87
//
Query:       CDO71767.1  [L=182]
Description: hypothetical protein BN946_scf184920.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   15.2   0.5      0.068   14.0   0.5    1.6  1  DUF3817   Domain of unknown function (DUF3817)


Domain annotation for each model (and alignments):
>> DUF3817  Domain of unknown function (DUF3817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   3.8e-06     0.068       8      52 ..     112     157 ..     104     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-06
     DUF3817   8 AiiegvslllLlvamilkyllvkvigivHGll.fvvYlllalllas 52 
                 A ++ + + +L +   lky l ++  ++HG + fvv+ll++ l+++
  CDO71767.1 112 ADVTHILWSFLGLPDALKYDLASWNSMTHGNItFVVFLLSMRLAWF 157
                 5678889999999999****99********766******9988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1277.08
//
Query:       CDO71768.1  [L=566]
Description: hypothetical protein BN946_scf184920.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-12   47.5  14.4    2.5e-12   46.7  14.4    1.4  1  bZIP_1           bZIP transcription factor
     0.0012   18.5   2.3     0.0029   17.3   2.3    1.6  1  DivIC            Septum formation initiator
     0.0052   16.8  14.2     0.0052   16.8  14.2    2.4  2  bZIP_2           Basic region leucine zipper
     0.0063   16.3   8.1     0.0099   15.6   8.1    1.3  1  SHE3             SWI5-dependent HO expression protein 3
  ------ inclusion threshold ------
        0.2   11.6   3.1        0.3   11.0   3.1    1.2  1  GvpL_GvpF        Gas vesicle synthesis protein GvpL/GvpF
       0.25   11.7   4.8          2    8.8   3.9    2.3  2  TSC22            TSC-22/dip/bun family
       0.27   11.6   4.3       0.87   10.0   4.3    1.9  1  DBR1             Lariat debranching enzyme, C-terminal domain
       0.29   11.0   2.2       0.96    9.3   1.8    2.0  2  Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
        1.6    7.6   4.1        2.2    7.2   4.1    1.1  1  Pox_G5           Poxvirus G5 protein
          2    8.4  16.0        4.2    7.4  16.0    1.5  1  rRNA_processing  rRNA processing
        2.4    8.7  15.1       0.52   10.9  11.2    1.9  1  bZIP_Maf         bZIP Maf transcription factor
        2.7    8.7   6.3       0.44   11.2   2.1    1.8  2  YabA             Initiation control protein YabA
        6.3    5.8  17.3      0.026   13.7   8.1    1.5  2  Tmemb_cc2        Predicted transmembrane and coiled-coil 2 pr


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7  14.4   1.8e-15   2.5e-12       2      64 .]     165     227 ..     164     227 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.8e-15
                 XXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLkskvk 64 
                  e++  krk++NR a+r++R+RK+  ++ Le++v+aLe++N++  +e+e+l++  + L+++++
  CDO71768.1 165 DEIRLLKRKEQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENENLRDLLQRLQNENM 227
                 589999****************************************************99986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.3   2.1e-06    0.0029      18      61 ..     190     232 ..     183     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerA 61 
                  +k+l+ ++aal+a++    +ene+L + +++L ++e++  ++A
  CDO71768.1 190 HVKDLEDKVAALEAKNHMTEQENENLRDLLQRL-QNENMMLKQA 232
                 5789*****************************.8****99998 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  14.2   3.7e-06    0.0052       6      52 ..     169     216 ..     164     217 .. 0.92
   2 ?    0.8   6.2      0.38   5.2e+02      30      53 ..     208     231 ..     204     232 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.7e-06
                 XXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   6 rerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                   +R+ +Nr+A r +Re+k  + ++le++v  Le++N   +q++e+L+
  CDO71768.1 169 LLKRKeQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENENLR 216
                 579999**************************************9996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  30 leervkeLeeeNaqLrqkveqLek 53 
                 +e+++++L+   ++L++++ +L++
  CDO71768.1 208 TEQENENLRDLLQRLQNENMMLKQ 231
                 677888888888888888877775 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   8.1   7.2e-06    0.0099      45     108 ..     165     231 ..     118     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH CS
        SHE3  45 enlaslkhENdnL...sslLkRKerrlkdlekelselkesveelklekkqlkkrlenssasetelee 108
                 +++  lk   +n     ++ +RKer++kdle++++ l+ ++   ++e+++l++ l++++++++ l++
  CDO71768.1 165 DEIRLLKRKEQNRaaqRAFRERKERHVKDLEDKVAALEAKNHMTEQENENLRDLLQRLQNENMMLKQ 231
                 566666554444311135679***************************************9999887 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.1   0.00021       0.3     143     199 ..     159     227 ..     121     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
   GvpL_GvpF 143 ieaasesgtayllrkrlgqrleealeerreelaeeleeaLaplaeevrerepqd............eem 199
                  ++++++  + l+rk++++++++a +er+e+++++le+++a+l ++ ++ e+++            e+m
  CDO71768.1 159 KSGTPQDEIRLLKRKEQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENenlrdllqrlqnENM 227
                 23334447799********************************99999998888667777766666444 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.9    0.0014         2      16      45 ..     191     220 ..     186     228 .. 0.86
   2 ?    3.2   0.4     0.079   1.1e+02      26      44 ..     215     233 ..     214     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
       TSC22  16 VevLkekIkeLeernseleeENslLkalas 45 
                 V  L +k++ Le++n+  e+EN+ L+ l+ 
  CDO71768.1 191 VKDLEDKVAALEAKNHMTEQENENLRDLLQ 220
                 78899*********************7654 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.079
       TSC22  26 LeernseleeENslLkala 44 
                 L +  ++l++EN +Lk+ a
  CDO71768.1 215 LRDLLQRLQNENMMLKQAA 233
                 6677899*********976 PP

>> DBR1  Lariat debranching enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.3   0.00063      0.87      66     130 ..     200     262 ..     158     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
        DBR1  66 klpedk.eaelaelieeelawveenivekgklkipenFertaPageeeaeekeqpkeytNpQteaf 130
                  l   + ++++ e+ +e+l+ + +++++++ +     F+ taP ++ +++++  ++ ++N+Q  +f
  CDO71768.1 200 AL---EaKNHMTEQENENLRDLLQRLQNENMMLKQAAFTFTAPRSTAANATTPAQNAFNNNQNMQF 262
                 22...13677777777888888888855555566666******554457888888*******9988 PP

>> Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.8    0.0007      0.96      31      80 ..     176     228 ..     173     237 .. 0.81
   2 ?   -2.0   0.0       2.1   2.9e+03      42      64 ..     387     409 ..     381     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0007
  Glutaredoxin2_C  31 tqsAreyftkkkeksigdfe...ellaktpeliaelnalLeelepliksseav 80 
                       ++A+++f+++ke+ ++d+e   ++l+ ++++ ++ n+ L++l + +++++ +
       CDO71768.1 176 NRAAQRAFRERKERHVKDLEdkvAALEAKNHMTEQENENLRDLLQRLQNENMM 228
                      5789***********99877222578888899999999999999999877654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
  Glutaredoxin2_C  42 keksigdfeellaktpeliaeln 64 
                       ++s+ df+++la +p+ i+ ++
       CDO71768.1 387 NNSSAADFQAILASSPSSISPVS 409
                      5677889*********9998776 PP

>> Pox_G5  Poxvirus G5 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.1    0.0016       2.2      83     136 ..     173     226 ..     165     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
      Pox_G5  83 RekRrealkntikRKreelekleaaiseLdvedllyeeikedlelrikklsfyl 136
                 +e+ r+a+++  +RK+ ++++le+++++L+ ++ + e+  e+l+  +++l+  +
  CDO71768.1 173 KEQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENENLRDLLQRLQNEN 226
                 4566778888899******************************99999887655 PP

>> rRNA_processing  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  16.0    0.0031       4.2      41     123 ..     133     215 ..     107     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0031
  rRNA_processing  41 leeeekvakeaekskneeeeskkskkeareeeeklkfkerkeivkerkeekreekleavqeklerikalekkkkerekrkkkL 123
                       +++++++++a++ +n++  s++s++++ + ++++++ +rke+ +  ++  re+k+ +v++ ++++ ale k+++ e+++++L
       CDO71768.1 133 HKSQHTASSSASTGNNKKGGSSSSRRKSGTPQDEIRLLKRKEQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENENL 215
                      2233334444555556666666666666677777*********************************************9998 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  11.2   0.00037      0.52      23      89 ..     164     227 ..     156     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
    bZIP_Maf  23 eeeverLKqrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdalkrkne 89 
                 ++   +++   R+ +Nr +++  r+r+    ++le++ + le +++ ++qe++ lr  +++l+++n 
  CDO71768.1 164 QD---EIRLLKRKEQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENENLRDLLQRLQNENM 227
                 44...45555699*******************************************99999998875 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       5.6   7.8e+03      39      65 ..     109     135 ..      93     145 .. 0.61
   2 ?   11.2   2.1   0.00032      0.44      21      60 ..     188     227 ..     176     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHHHHXXXXXXXXXXXXX CS
        YabA  39 aeLeleneklrerleeeekkekekkke 65 
                 ++++ +  +l+++ ++++++++ ++k+
  CDO71768.1 109 QKVQNDDGSLKRKANNDNEDDEPQHKS 135
                 566666677777774444443333333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
        YabA  21 leeleelkeelaelleenaeLeleneklrerleeeekkek 60 
                  +++++l++++a+l  +n+  e ene+lr++l++ ++++ 
  CDO71768.1 188 ERHVKDLEDKVAALEAKNHMTEQENENLRDLLQRLQNENM 227
                 578999*************************965554443 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   8.1   1.9e-05     0.026     143     290 ..      73     232 ..      56     237 .. 0.59
   2 ?   -4.0   1.7       4.4   6.1e+03     174     189 ..     438     453 ..     382     494 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
   Tmemb_cc2 143 SADninslksseees...eeesgskslssstallvskskytsddesssssve...........sssadsnsnseestasa..........sksaesesq 217
                 S+D+  s  ss++e+   +++sg+ +   st+ +++++  ++dd s + + +           s+++ s          +          ++s++++++
  CDO71768.1  73 SSDSSPSPPSSHNEAslsRRQSGAFNSPVSTSPVDQQK-VQNDDGSLKRKANndneddepqhkSQHTAS----------SsastgnnkkgGSSSSRRKS 160
                 66666555544444445455555555555555555544.333333333332223333332211222222..........12222222233333333333 PP

   Tmemb_cc2 218 eklekileelqeikeeqerleeelerlkeqlkkelkllkqaLqeeryryerLEeqlndlteLhqnEienLKqe 290
                  + +  ++ l ++ke++   ++ + + ke+  k+l+    aL+   + +e+  e l dl++  qnE + LKq+
  CDO71768.1 161 GTPQDEIR-LLKRKEQNRAAQRAFRERKERHVKDLEDKVAALEAKNHMTEQENENLRDLLQRLQNENMMLKQA 232
                 33333333.3347888888888888888888889999999********************************7 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.4
   Tmemb_cc2 174 vskskytsddesssss 189
                 ++++  + ++e+ +++
  CDO71768.1 438 NGSPALHHTGECPKTK 453
                 2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1907  (0.106364); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 3393.00
//
Query:       CDO71769.1  [L=497]
Description: hypothetical protein BN946_scf184920.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3251.20
//
Query:       CDO71770.1  [L=239]
Description: hypothetical protein BN946_scf184920.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   14.0   0.0      0.089   12.5   0.0    1.8  1  HeH       HeH/LEM domain


Domain annotation for each model (and alignments):
>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-06     0.089       7      21 ..     217     231 ..     217     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-06
         HeH   7 aqLRriLvehgveyP 21 
                 a+LR  L eh++++P
  CDO71770.1 217 ARLRGALDEHDIDIP 231
                 79************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1616.04
//
Query:       CDO71771.1  [L=428]
Description: hypothetical protein BN946_scf184923.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-05   24.7   1.3    0.00023   20.4   1.0    2.2  2  Glyco_hydro_88  Glycosyl Hydrolase Family 88
  ------ inclusion threshold ------
       0.97    8.9   4.2       0.39   10.2   1.1    1.9  2  CAP_N           Adenylate cyclase associated (CAP) N terminal
          6    7.4   7.3         19    5.8   0.3    3.0  3  TetR_C_28       Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0032        19      91     122 ..     143     174 ..     129     183 .. 0.79
   2 !   20.4   1.0   3.8e-08   0.00023     156     264 ..     171     281 ..     167     304 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0032
                     HHHHHHHHHHHHHHHHCS-B.TTS.B.SBTTS CS
  Glyco_hydro_88  91 erykeaaeeladyvlakpprtseGgfwhkkke 122
                      +y  aa++  +y+l+k p+ts+G   h +++
      CDO71771.1 143 HDYAGAAQDQLEYLLEKVPKTSDGAISHRQEQ 174
                     67899999*****************9994433 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 3.8e-08
                     HHHHHHHHHHBETTTSEB-SEEETTTTSTTS.--BHHHHHHHHHHHHHHHHHS-TT-..TTHHHHHHHHHHHHHHHH....CTS-TTSSEBSBTT CS
  Glyco_hydro_88 156 kqflltarhlfdpetGlyyhgwdesgtedwakefWaRgngWalaglaevlelLpeke..karqelinllrdlvkala....klqdeeglWhqild 244
                     +q +   ++l d ++G +++     ++ d +   W+ gngWa+ag+ +vl ++ +++  k+ ++  + l++ v+++        +++gl+    d
      CDO71771.1 171 RQEQVQLQYLVDSDAGGMWKHIVMGQNTD-SG-HWSTGNGWAAAGMLRVLGTIQNSQyaKNMKKQAKDLSGWVSEIHggiyPHLRSNGLFGNYAD 263
                     56666778899999999999888777765.55.6******************988431123334445566666655422114445899**99999 PP

                     -TTTTSSBEHHHHHHHHHHH CS
  Glyco_hydro_88 245 dgskesylEtSatalfvygL 264
                     d+s     ++S ta+ + + 
      CDO71771.1 264 DSS--TFDDASSTAILASTV 281
                     999..999999999877654 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.22   1.3e+03     217     260 ..      44      87 ..      33     108 .. 0.57
   2 ?   10.2   1.1   6.5e-05      0.39     236     276 ..     303     340 ..     222     345 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.22
                 TS----.TTSBE.......SSC--XXXXXXX....XXXXXXXX.. CS
       CAP_N 217 tGltWn.kkGkdaeealkaaaaaasaaaaggpppPpPpPppasvf 260
                 +G t + + G+  e+ +++++++ s+ ++++ ppP+    p+s+ 
  CDO71771.1  44 EGATHSwEIGTRTEALIESDTPTYSVLNNTSLPPPKGQA-PSSLD 87 
                 555554456777777777666666666666644443333.44433 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.5e-05
                 SC--XXXXXXX.....XXXXXXXX.....XXXXXXXXXXXXX CS
       CAP_N 236 aaaasaaaagg.pppPpPpPppasvfeeesaaasasaaaggm 276
                  ++ +++a ++ p+p +PpPp as  +++s  ++as+a++++
  CDO71771.1 303 RSSRQPPALSAlPAPRKPPPPRAS--SATS--SAASSASPSA 340
                 122222222232333333333333..2222..3333333333 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0032        19      65      93 ..      16      44 ..      13      47 .. 0.91
   2 ?   -2.8   0.0       1.5     9e+03      18      43 ..     325     350 ..     315     355 .. 0.68
   3 ?    4.7   0.5    0.0071        43      32      76 ..     382     428 .]     378     428 .] 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0032
                HHHHHHHHHHSSS---HHHHHHHHHHHHH CS
   TetR_C_28 65 adGlwlaellglppldpeeraallerLle 93
                a G+ la++l  ++l++++++a+ +rL e
  CDO71771.1 16 AGGILLASTLRAQTLTDDQLDAVKARLAE 44
                669************************87 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                 HHHHHHHHHGGGSHHHHHHHHHHHHH CS
   TetR_C_28  18 allaallaalaedpellepwrewyrr 43 
                 a +a  +aa +++p + +++   +++
  CDO71771.1 325 ASSATSSAASSASPSATALVGPAMQH 350
                 55666677777777777776666665 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHHHHS--TTGG.-HH.HHHHHHHHHHHHHHHHHHHHSS CS
   TetR_C_28  32 ellepwrewyrrwlerlead.gld.pvlatlvrlAadGlwlaellgl 76 
                 el ++wr+w +   +   a       ++ +l+ lA+ G+ l+ l+gl
  CDO71771.1 382 ELDAAWRDWAALGSPGANAAvRVRgGQAGELAVLACVGVVLSLLFGL 428
                 67889999999888855555455558999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2739.79
//
Query:       CDO71772.1  [L=776]
Description: hypothetical protein BN946_scf184923.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 5199.86
//
Query:       CDO71773.1  [L=1179]
Description: hypothetical protein BN946_scf184923.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-21   77.3   0.0    1.3e-17   64.1   0.0    2.2  2  DUF1708   Domain of unknown function (DUF1708)
  ------ inclusion threshold ------
       0.05   13.4   0.0       0.33   10.8   0.0    2.2  3  RhoGAP    RhoGAP domain


Domain annotation for each model (and alignments):
>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.5e-21   1.3e-17       5     227 ..     121     346 ..     118     399 .. 0.82
   2 !   10.9   0.2   2.1e-05      0.18     317     363 ..     484     546 ..     458     580 .. 0.82

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.5e-21
     DUF1708   5 eevkelihliteelKargldtpfllLpFrpesdpsalrtflrnfFpk....gqeegsslkgeell...qelrktdiltLisvlkylWsrlpggvvgwda 96 
                 +ev  l+ ++ eel +rgl+tpf++     +   +a+++++++f ++    ++e++ + ++e+ l   +el +t  + L  v++++     +g v+++a
  CDO71773.1 121 QEVARLVDVVGEELGTRGLTTPFIFSALALDVSATAVKRLIQTFLNTctkpSSEADRQWREEARLagpHELGMTLRWGLARVVRWVGGHQVRGLVSYEA 219
                 6899****************************************99853332223333333332224455555666666666666666667899***** PP

     DUF1708  97 YeeFkkkEkeselprdaFltfipkslssearasivydFldLlvaiaahgkknglggrklsrlaglwAFehkdkgnsfeeglkswskaadAlshLflayL 195
                 Y e++ +E+  ++p   F++f+     ++  +si+   + Ll   aah+ + g +   ls l+g   F    ++ +f++++ ++ +a+ A+ hL+la++
  CDO71773.1 220 YCEWRDAEAALNYPGLHFSSFLDPL--DPLLRSILVGLFTLLCRFAAHSASSGHTPPTLSPLFGPLLFGLGPSTLNFHHAYVHYLRATTATEHLILAFI 316
                 **********************875..57899******************************************************************* PP

     DUF1708 196 rsllpekeketegsklprsLqkllqeteYPPe 227
                 r    +++    +  +p+ L++ +q   YP  
  CDO71773.1 317 RWQDTKTSAASPALGVPTRLKAWIQ--GYPAM 346
                 *998887777666889999999876..46655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.1e-05
     DUF1708 317 stsledaswsrfkdigfeaglee.ee...............rpttpsWadflssglkssqsdk 363
                  +sl+d +w +f+ +gf + + + ++               + +t sW df s+g++ s  + 
  CDO71773.1 484 FRSLTDLKWGEFEAMGFGSLVADeKKlqfdltegaraaraaKRATLSWQDFSSAGFSRSDAHL 546
                 57899***************9552558999***********99*************7776664 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.1     1e+04       6      42 ..     129     168 ..     126     179 .. 0.61
   2 ?   10.8   0.0   3.7e-05      0.33      71     144 ..     214     285 ..     210     291 .. 0.81
   3 ?   -0.9   0.0      0.14   1.3e+03      14      36 ..     719     741 ..     706     759 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHTTTSTTTTT...S-S-HHHHHHHHHHHHHTG CS
      RhoGAP   6 kcvefiekrgldtegiyR...vsgskarvkelreafdkgk 42 
                  + e++  rgl+t  i+    +  s+++vk+l + f +  
  CDO71773.1 129 VVGEELGTRGLTTPFIFSalaLDVSATAVKRLIQTFLNTC 168
                 5566777777777777751113456777777777665554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.7e-05
                 TTTGGHHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHH CS
      RhoGAP  71 LltkelyeelieaaksedeeerlealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLl 144
                 L+++e+y e+ +a      +    ++++ l+ L +  r++L  L+ +L+r+a++s++   t+  L+  f+P L+
  CDO71773.1 214 LVSYEAYCEWRDAE--AALNYPGLHFSSFLDPLDPLLRSILVGLFTLLCRFAAHSASSGHTPPTLSPLFGPLLF 285
                 66666666666542..223333457888999999999***********************************98 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.14
                 HTTTSTTTTTS-S-HHHHHHHHH CS
      RhoGAP  14 rgldtegiyRvsgskarvkelre 36 
                 r+++ eg+ R +gs+++v  l  
  CDO71773.1 719 REVEFEGLLRSNGSATKVISLNR 741
                 67899***********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 8140.85
//
Query:       CDO71774.1  [L=95]
Description: hypothetical protein BN946_scf184923.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      107  (0.00596798); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 706.41
//
Query:       CDO71775.1  [L=180]
Description: hypothetical protein BN946_scf184923.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-40  139.4   0.1    1.4e-40  139.2   0.1    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.1   7.6e-45   1.4e-40       3     156 ..      25     177 ..      23     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 7.6e-45
  Pro_isomerase   3 dietss..kGrivieLfadkaPktvenFlklvkeg....fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraip.dEitsklkh.krG 89 
                    d++++s   Gri+++L++d +Pkt++nF++l+ +g     Y g++FhR+i++    gGd+t ++   ++  +  ge+  a+  dE+ +klkh k+G
     CDO71775.1  25 DVAIDSkpTGRIIFKLYDDVVPKTAKNFRELA-TGqhgfGYAGSQFHRIIPN----GGDFTRHNG--TGGkSIYGEKFAALGlDEN-FKLKHsKPG 112
                    566655668***********************.5669999***********9....***999855..4333555555555541555.89999999* PP

  Pro_isomerase  90 alamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkivsa 156
                    +l+ma++g  pn++gsqFfIt+  +++ldgk++vFG+V eGmd+v++ie+v +++ rpk++v+i+s 
     CDO71775.1 113 LLSMANAG--PNTNGSQFFITTVVTSWLDGKHVVFGEVEEGMDIVKAIEAVGSESGRPKSRVTITSS 177
                    ******98..8***************************************877778********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1421.86
//
Query:       CDO71776.1  [L=800]
Description: hypothetical protein BN946_scf184923.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-193  643.8  63.9   3.5e-193  643.6  63.9    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  643.6  63.9  1.9e-197  3.5e-193       2     615 ..     104     752 ..     103     753 .. 0.98

  Alignments for each domain:
  == domain 1  score: 643.6 bits;  conditional E-value: 1.9e-197
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.....lslnpgpftikEnvliqtmasaaatlala.tglivvipal 94 
                 +TlRa+++Gi++++++  +n++f++r+++v+++ ++a+ll++plg+++a+ +pk     +slnpgpft+kE+vl+++ma+++ ++a+a t+l++v++ +
  CDO71776.1 104 NTLRAWAIGIIWAMIIPGMNQFFYFRYPSVTVTGLVAQLLSYPLGRLWAFAMPKvkvfgVSLNPGPFTVKEHVLVTIMANVGYQSAYAqTDLVAVQRVY 202
                 8*************************************************************************************99679******** PP

         OPT  95 elygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee......ksrlkfflivflgsfvwglfplylfpalssf 187
                   y+q ++f y++++++s+ql+G+ + g+ R++lv p+++i+P++l+t++l+++lh+++ +       +sr +ffl++flgsf+w++fp+y+f+als+f
  CDO71776.1 203 --YHQIYNFSYQWMIVMSTQLIGFSIGGIARRYLVAPPSMIWPTNLVTCALFNTLHSQKYAGignrggISREWFFLYAFLGSFLWYFFPGYIFQALSYF 299
                 ..*******************************************************99655888899******************************* PP

         OPT 188 swltwiapknvvlanlf....glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvtei 269
                  w++wiap+nvv+++lf    glg+   tfdw++i+ yiGs+l  p+w+++n+ +G+vl++++l P+lyy+n+wy++y+p             y+vt+i
  CDO71776.1 300 TWVCWIAPDNVVVNQLFgyynGLGMSLVTFDWSQIT-YIGSPLAAPWWATANVTVGFVLFFWVLTPILYYTNIWYAKYMPistrtsydrfgheYNVTRI 397
                 ************************************.************************************************************** PP

         OPT 270 ldedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwylall.vlslvigiivv 367
                 l+ +++ld + y++y++ +l++++a++y+++fa+it++i+htil+  k+i+ +++       e++d+h rlm ky++vp+wwy  ++ v+++v+g+i +
  CDO71776.1 398 LSPQATLDIDMYKSYSPLFLSTTFAISYGLSFASITATIMHTILFFRKQIWLQSRRS---LSEQPDVHARLMSKYPQVPEWWYSTVFaVVMFVFGVISI 493
                 ******************************************************998...9**********************9998799********* PP

         OPT 368 ealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaql 466
                 e++ tq+pvw+l+lal++a++ +i+++ii+++t++  ++g++++t+li+g++lpg+p+a+++f++++y+++aqa +f++D+K+Gh++k++Pra+f+aq+
  CDO71776.1 494 EVWNTQMPVWALMLALVIASIYTIPVGIIQAITNQ--QVGLNVITELIIGYALPGKPIAMMMFKTYGYITMAQALQFTSDFKLGHYMKIPPRAMFWAQV 590
                 ***********************************..************************************************************** PP

         OPT 467 iGtlvgavvniavlkllvkaygdictadasnaftaPqakvfaavavl..lvggk.........kglpwafllgavapfilllllkkfpkkstarklplp 554
                 ++++++  v+ +v ++++++++d+c +++++ f +P   vf +++++  ++g++         +gl ++fl+gavap++++l++ ++p +s  r+++ p
  CDO71776.1 591 VAAVIAGTVQLGVQSWMFTNIEDMCSPNQKDGFICPGTEVFGTASIVwgVIGPQrqfsegqiyYGLVFFFLIGAVAPLVTYLAMLRWP-NSVLRYVNFP 688
                 ************************************************999999**********************************.999******* PP

         OPT 555 lafavgfylppsl...sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiafl 615
                 ++f+++ y+pp++   +++ +i+g+i+n++++rr+ +w+ kyny+l+a+L++G a+++++++f+
  CDO71776.1 689 VIFNGTSYIPPASalnYVPWAIVGFIFNYVIRRRHFSWWTKYNYILSAALDSGVAVSIIVVYFA 752
                 *************78766999*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5356.77
//
Query:       CDO71777.1  [L=1477]
Description: hypothetical protein BN946_scf184939.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-58  197.6   0.0    2.5e-58  196.9   0.0    1.2  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
      1e-38  131.7   0.1    1.2e-19   70.5   0.0    2.5  2  C2              C2 domain
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.067   13.2   0.0    1.8  1  EF-hand_6       EF-hand domain


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.0   4.2e-62   2.5e-58       1     186 [.     791     983 ..     791    1001 .. 0.93

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 4.2e-62
  PS_Dcarbxylase   1 lneffvrklkdgaRpi..dddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkv 93 
                     +n+ff+rklk++aRpi  +ddp  +vs+aD+r++ +++++e + +++Kg ++s++ Llgea++ +ad++ +g +++++L+p+dyHr+h+Pv+g++
      CDO71777.1 791 FNQFFYRKLKPDARPIecPDDPYRLVSGADCRLMVFETVTEATRLWIKGRDFSVARLLGEAHRADADRYVGGALCIFRLAPQDYHRFHSPVDGTI 885
                     8***************87777778*********************************************************************** PP

  PS_Dcarbxylase  94 eerrhipGellsvnpsalkelrglftlneRvvlview..kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf.GStvvlvfeag..kfie 183
                       ++ i+Ge+++vnp+a+++  +++ +n R ++ i++  +G+v++v +Ga++vgsi+++v++g+++k+G+e+GyF+f GSt+v++fe+g  +++e
      CDO71777.1 886 GPMTDIAGEYYTVNPQAIRSALDVYGENVRKIVPIDSpqFGRVMCVCIGAMMVGSIHMTVEEGQQVKRGQEFGYFAFgGSTMVVLFEKGvvQWDE 980
                     ************************************5569************************************************9775555 PP

  PS_Dcarbxylase 184 slv 186
                     +l+
      CDO71777.1 981 DLL 983
                     544 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.1e-19   6.6e-16       2      90 ..      43     135 ..      42     144 .. 0.90
   2 !   70.5   0.0   1.9e-23   1.2e-19       2      98 ..     410     510 ..     409     516 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.1e-19
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEE...EEEEEEESC...HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWn...ekftfevae...leeakLeveVfdndrlskddfiGkveiplst 90 
                 +l+v+v++++nL +kd +g+sdp+v++s+  +++++T v k+++nP++n    +f f+++    ++  +Le+ V+d+d+  k+d +G++ ipl++
  CDO71777.1  43 ILRVQVLSCTNLLAKDRNGHSDPFVVLSV-LANRHQTPVSKRTVNPTFNpkdATFDFPIYLslaDKLGVLELVVWDKDV-LKKDYLGEAAIPLDD 135
                 69***************************.******************87446777777779999999***********.89999********98 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 1.9e-23
                 EEEEEEEEEESSSSSSTTSS......CEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHT CS
          C2   2 klevtvieAknLpnkdkkgs......sdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplstlls 93 
                 ++ ++++ A++Lp+ +          +dp+v+vs+ gk++++Trvi+ slnP+W+ek+ f+v+  + + k++++V+d+d+ls++d +G +++++++ll 
  CDO71777.1 410 IVMLEIKGARDLPKLKN--LtrmgwdMDPFVVVSF-GKKVFRTRVIRHSLNPQWDEKMLFHVRRyETAFKIQLTVLDWDKLSSNDHVGDASLDVARLLA 505
                 67899*******88844..2235666*********.****************************99999***************************887 PP

                 THHHH CS
          C2  94 geeae 98 
                 +++++
  CDO71777.1 506 NAPKK 510
                 77665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.067       4      31 .]     569     595 ..     566     595 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrkalg 31 
                    k++D+d++G+i+  El ++l  +lg
  CDO71777.1 569 VYLKQYDTDDTGTISHLELTSMLD-SLG 595
                 56699*****************99.776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 9395.51
//
Query:       CDO71778.1  [L=618]
Description: hypothetical protein BN946_scf184939.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-11   44.4   0.0    1.9e-11   43.7   0.0    1.4  1  TBPIP     TBPIP/Hop2 winged helix domain
  ------ inclusion threshold ------
       0.52    9.1   4.6       0.69    8.7   4.6    1.1  1  DUF812    Protein of unknown function (DUF812)


Domain annotation for each model (and alignments):
>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.1e-15   1.9e-11      14      62 .]       2      50 ..       1      50 [. 0.97

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.1e-15
       TBPIP 14 nrPfsvqdvvanlqkklgKtavqkaLdeLvdegkiieKeyGKqkiYlan 62
                nrPf++ dv+anl++ + K+a qk++  L+++g ++ K+yGK++ ++an
  CDO71778.1  2 NRPFGAVDVSANLKGAVPKAATQKIMVALAEKGDLVQKTYGKTTFFVAN 50
                9*******************************************99986 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.6   7.7e-05      0.69     328     427 ..      50     150 ..      20     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 7.7e-05
      DUF812 328 reeeleel.qeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalve.asaqrlvelakqWekhRv 424
                 ++++le + +e++++le+++++++e+ k + +++k +  el ++k++ +e+e  v+++k  ++ +++a + +e Lqa     sa++  +l + W k R 
  CDO71778.1  50 NQANLEHMpSEKLSALEAEVKRIDEQNKVMVADLKSIGAELAKLKSTPTEKELAVEVEKASVA-VQKARAHLEPLQAGTPlISAEETAQLDADWTKWRN 147
                 566777774689********************************************9887776.5699********97652789999999999999998 PP

      DUF812 425 pli 427
                  ++
  CDO71778.1 148 EWT 150
                 875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3886.09
//
Query:       CDO71779.1  [L=353]
Description: hypothetical protein BN946_scf184939.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-52  174.4   5.9    2.1e-20   72.4   0.1    3.9  3  Mito_carr        Mitochondrial carrier protein
     0.0024   17.1   0.0      0.031   13.4   0.0    2.3  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   2.4e-24   2.1e-20       5      94 ..      17     108 ..      15     111 .. 0.92
   2 !   51.1   0.3   1.1e-17   9.8e-14       4      93 ..     115     232 ..     112     236 .. 0.85
   3 !   50.4   0.1   1.8e-17   1.6e-13       3      93 ..     245     334 ..     243     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.4e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 vl++ laGg+a++va++v++Pld+vK+ +q+++   +k    +    +++++++iy e+G+rgl +G +++llr++p+ a+kf++y++l  +l+
  CDO71779.1  17 VLRSGLAGGVAACVAKTVVAPLDRVKILFQASNPDFQKYA--GtwsgTFRAVSQIYGENGIRGLLQGHSATLLRIFPYGAIKFMAYDQLEAILM 108
                 67889**************************999988743..34588*****************************************998876 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 1.1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHG........................GGTTHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrg........................lyrGllpnllr 74 
                 + l+++ aG+l+g++++++t+Pl+++++r+  + ++s+++  ++    +l+++++iy+e   ++                        +yrG+++++ +
  CDO71779.1 115 TNLRRFTAGALSGMTSVFFTYPLELIRVRMAFSTRNSSHTPEGYhrpsFLSAMRQIYREGPTTAaatassspsrvaqssiftrfpilkFYRGFTVTIAG 213
                 67899***************************99888877666688999999999997655555778888888888888888888888*********** PP

                 HHHHHHHHHHHHHHHHHHH CS
   Mito_carr  75 vapasalkfvlyetlkrll 93 
                 ++p+++  f++  +l+  +
  CDO71779.1 214 IIPYAGTSFLAWGFLRSRF 232
                 *********9998887766 PP

  == domain 3  score: 50.4 bits;  conditional E-value: 1.8e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  ++l++l +G+++g +a++v +P++vv+ r+q+ + +  ++  +   +++++i+ + G rg+y Gl++  l+v+p +a+  ++ +  +rll
  CDO71779.1 245 ATPLADLSIGAVSGGLAQTVSYPFEVVRRRMQVGGLTRPDRWIR-WGETVRTIWATRGWRGFYVGLSIGYLKVVPMTAVSYAVWQWQRRLL 334
                 678999*******************************9987665.99*********************************99988888776 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.4e-06     0.031     170     198 ..     113     141 ..      90     188 .. 0.80
   2 ?    0.8   0.0     0.025   2.2e+02     177     196 ..     251     270 ..     244     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-06
  Serine_protease 170 ndelynkllaGalsGviAtvlttifnsyk 198
                       +++ ++++aGalsG++  ++t+++ + +
       CDO71779.1 113 SQTNLRRFTAGALSGMTSVFFTYPLELIR 141
                      467889******************98765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.025
  Serine_protease 177 llaGalsGviAtvlttifns 196
                      l  Ga+sG +A +++++f  
       CDO71779.1 251 LSIGAVSGGLAQTVSYPFEV 270
                      567**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2390.82
//
Query:       CDO71780.1  [L=166]
Description: hypothetical protein BN946_scf184939.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1139.57
//
Query:       CDO71781.1  [L=600]
Description: hypothetical protein BN946_scf184939.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00052   19.8   0.0     0.0016   18.3   0.0    1.8  1  F-box-like  F-box-like
     0.0072   16.2   0.0       0.11   12.4   0.0    2.8  3  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.8e-07    0.0016       7      35 ..      27      55 ..      25      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-07
  F-box-like  7 EiLlqIFsyLppsdLlrlalVCrrWrrva 35
                +iLl IFsy++  d l++alV+r  + +a
  CDO71781.1 27 DILLAIFSYIHGADALNAALVSRGLYPFA 55
                7**********************988665 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.2e-05      0.11       3      34 ..      21      52 ..      19      52 .. 0.91
   2 ?   -3.4   0.0       1.1     1e+04      11      24 ..     337     350 ..     334     352 .. 0.78
   3 ?   -0.3   0.0      0.12   1.1e+03      10      28 ..     484     502 ..     442     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
                HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHH CS
       F-box  3 lsrLPsevlrhILerLplsdllalrrVSkgwr 34
                +  L +++l+ I+++    d l++++VS+g++
  CDO71781.1 21 IYALNEDILLAIFSYIHGADALNAALVSRGLY 52
                55699*************************86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
                 HHHHHHTS-HHHHH CS
       F-box  11 lrhILerLplsdll 24 
                 lr + +rL+++ +l
  CDO71781.1 337 LRFVVQRLSTVQRL 350
                 67788999998877 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.12
                 HHHHHHHTS-HHHHHHHCT CS
       F-box  10 vlrhILerLplsdllalrr 28 
                 ++ h +++ p+ +++a++r
  CDO71781.1 484 LVQHAFRYIPTLEVVAIAR 502
                 78899*********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4285.92
//
Query:       CDO71782.1  [L=194]
Description: hypothetical protein BN946_scf184939.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1367.61
//
Query:       CDO71783.1  [L=321]
Description: hypothetical protein BN946_scf184939.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2201.75
//
Query:       CDO71784.1  [L=891]
Description: hypothetical protein BN946_scf184939.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-23   81.1   0.0    1.3e-22   80.3   0.0    1.4  1  DDE_1        DDE superfamily endonuclease
    3.1e-09   36.7   0.7    2.6e-08   33.8   0.1    2.6  2  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
     0.0039   17.0   0.0       0.01   15.6   0.0    1.7  1  DDE_3        DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0   2.1e-26   1.3e-22       3     175 .]     193     360 ..     191     360 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 2.1e-26
       DDE_1   3 rltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWL.kvfdkrle...aekrkilLlldssrshetvel.lese 96 
                 +l++++++++a++e Lkp+ i+ +k+  + ++    +   d+ + ++ ++w+++ + +eW+ ++f+++          ilL+ d+++sh+t  l +   
  CDO71784.1 193 ELVTVIECVRADGESLKPTFIFPGKEFHKEWF----EVDPDILICMSPNGWTDDVLCAEWFeHAFIPQATakrTSAAPILLIYDGHGSHATPRLvELAL 287
                 567899**************************....8999****************************99776677789*************9966677 PP

       DDE_1  97 lqniklvflPassasllqPldqgvvselKarYrrqllqalleeqnrlskeqkkltlldalkfikkAwn.avsketiksaf 175
                 ++ni+l++lP++++++lqPld++v+++l + +++   +   +++++++k       +d ++ ++  ++ a++++ iks+f
  CDO71784.1 288 ENNIHLFCLPPHTTHKLQPLDVSVFAQLSSAWKKRCDEVCSATNHEMRK-------QDIVHEYMSVRKaAITPQLIKSGF 360
                 899********************************99999999999988.......677777777777677777777766 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   4.4e-12   2.6e-08       4      62 ..      61     112 ..      58     117 .. 0.92
   2 ?    0.0   0.0      0.15     9e+02      20      38 ..     731     749 ..     724     774 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.4e-12
                  HHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS- CS
  HTH_Tnp_Tc5   4 lEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhgl 62 
                  +E+aL++W+ +l   g+p++ +++r+k q++       +++  ++S +Wl rF+ Rh++
   CDO71784.1  61 QERALVDWLVHLSTIGRPLNKRTVRKKVQRI-------SGRRRTPSRKWLARFLARHEV 112
                  9*****************************9.......6899***************53 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.15
                  ---SCHHHHHHHHHHHHHS CS
  HTH_Tnp_Tc5  20 ipitgelirekAqelasla 38 
                  +++t e+++++ q++++++
   CDO71784.1 731 KRPTKEILKKAVQKYFEDH 749
                  6899999999999987332 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-06      0.01      61     116 ..     246     300 ..     236     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
       DDE_3  61 aedfae.flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpyS 116
                 ae f++ f+ +   ++++a +i li D+++ H    l+el+ e   +++l+ lPp+ 
  CDO71784.1 246 AEWFEHaFIPQATAKRTSAAPILLIYDGHGSHATPRLVELALE--NNIHLFCLPPHT 300
                 55566559999999999999***********************..********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6025.49
//
Query:       CDO71785.1  [L=473]
Description: hypothetical protein BN946_scf184939.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-12   45.6   0.5    8.2e-12   44.7   0.5    1.5  1  DUF1752   Fungal protein of unknown function (DUF1752)


Domain annotation for each model (and alignments):
>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.5   4.6e-16   8.2e-12       3      28 .]      50      75 ..      48      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.6e-16
     DUF1752  3 kyytkkkkdlpngeRLENlSWRlWnk 28
                k++tk+k +l +g+RLEN+SWRlW++
  CDO71785.1 50 KVFTKCKESLKDGRRLENISWRLWYR 75
                9***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3407.22
//
Query:       CDO71786.1  [L=730]
Description: hypothetical protein BN946_scf184939.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   31.3   2.4    7.4e-05   22.5   0.1    3.1  2  F-box       F-box domain
    5.6e-06   26.2   1.0     0.0032   17.3   0.0    3.3  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   8.3e-09   7.4e-05       6      36 ..       6      36 ..       1      41 [. 0.93
   2 !    7.3   0.3    0.0005       4.5       2      34 ..     167     199 ..     166     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.3e-09
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwril 36
                L ++vlrhIL++L  +d l ++++Sk++r+l
  CDO71786.1  6 LNDDVLRHILSYLHGRDALHAALCSKRMRDL 36
                899**************************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0005
                 HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHH CS
       F-box   2 tlsrLPsevlrhILerLplsdllalrrVSkgwr 34 
                 +l++L ++vl +I  +L  +d ++ +  Sk+++
  CDO71786.1 167 SLLSLNDDVLSEIVFYLRDIDAINVAHSSKRLY 199
                 789***************************998 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.6e-07    0.0032       6      36 ..       8      38 ..       7      41 .. 0.94
   2 !    5.6   0.2    0.0016        14       6      35 ..     173     202 ..     168     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.6e-07
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrval 36
                d++L +I+syL+ +d l +al ++r r++al
  CDO71786.1  8 DDVLRHILSYLHGRDALHAALCSKRMRDLAL 38
                689**************************94 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0016
  F-box-like   6 dEiLlqIFsyLppsdLlrlalVCrrWrrva 35 
                 d++L++I  yL + d +++a+ ++r + +a
  CDO71786.1 173 DDVLSEIVFYLRDIDAINVAHSSKRLYCLA 202
                 799********999*************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5397.28
//
Query:       CDO71787.1  [L=831]
Description: hypothetical protein BN946_scf184939.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-30  104.4   0.0    7.9e-30  103.8   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.034   14.3   0.0    1.6  1  Gal4_dimer    Gal4-like dimerisation domain
       0.03   14.4   9.4      0.059   13.5   0.7    2.5  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
       0.16   11.0   0.1        0.3   10.1   0.0    1.4  2  Mon1          Trafficking protein Mon1


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   1.8e-33   7.9e-30       2     266 ..     288     542 ..     287     543 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1.8e-33
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   d++f+  ++ +p+lh+p+f     +++ +  ++ +   +l+++a Ga+f++++    + +  + s   ++++++ +++   ++  p++ l+ lq + 
    CDO71787.1 288 DLYFEEMNCYMPLLHRPTFEQAI-KDGVHLHDEGFGSTVLLVCANGARFTDDPRVLLDGTNDTQS-AGWKWFQQVQMVR-KSLLAPPR-LYDLQIYA 380
                   89*********************.666666666666667***************99988888877.9999999999888.66777777.******** PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLP..cddddlw 193
                   l + +++++s   +++ ++g+ +r+a+++g hr++ y+       ++  e+e +rR +w+   +D++ ++ lGrp  l d++ +++LP  cdd+ +w
    CDO71787.1 381 LTASFLQGTSAPQACWTIIGIGIRMAQDVGAHRKKVYSA------KPTMEEELWRRAFWCLVAMDRHASFALGRPCALQDEDFDCELPveCDDE-YW 470
                   **************************************9......88888**************************99********99656666.** PP

  Fungal_trans 194 esddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq..seklswveeleraldnWr 266
                   ++ d ++ +++     n+++ + +++  ++L +il+  +++++si+k   +  ++  +  +  v el++al++W 
    CDO71787.1 471 SHPDPEQAFKQP---PNKPSTVAFFNCYIRLHQILAFALRTIYSINKSKALLGFVgqQWEQHIVAELDSALNKWI 542
                   ************...99**************************************96666788999999999995 PP

>> Gal4_dimer  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.6e-06     0.034       8      32 ..      98     122 ..      93     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.6e-06
  Gal4_dimer   8 VEsRvtqLEqlLrrllpeeDiDnlL 32 
                 +EsR++++E+lL +l p+ D  ++L
  CDO71787.1  98 LESRLEKMEKLLNKLCPNADFTKEL 122
                 7*****************9987776 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.3    0.0069        31       1      11 [.      25      35 ..      25      36 .. 0.90
   2 ?   13.5   0.7   1.3e-05     0.059      18      38 ..      66      87 ..      54      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0069
                SS-HHHHHCT- CS
     Zn_clus  1 haCdnCrkkKv 11
                +aCd Cr+kK+
  CDO71787.1 25 RACDMCRRKKS 35
                69*******95 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.3e-05
                SS..-HHHHHCTHHHCCCCTCCC CS
     Zn_clus 18 Pa..CsnCkklnleCtfysessk 38
                P+  CsnC++++l+Ct y e  k
  CDO71787.1 66 PNnrCSNCVSYRLDCT-YVEAAK 87
                5566************.766655 PP

>> Mon1  Trafficking protein Mon1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       1.5   6.6e+03     280     314 ..     220     258 ..     192     275 .. 0.68
   2 ?   10.1   0.0   6.8e-05       0.3     323     403 ..     485     565 ..     468     566 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 1.5
                 XXXXX.XXXXXXXXXXX....XXXXXXXXXXXXXXXXXX CS
        Mon1 280 lkeal.sskklsvsdipi...pllrHFiykskknvQfvm 314
                 +++a+  ++++  +++p    p+ + F+ ++++++Q+++
  CDO71787.1 220 IQTAMdLKHEYAATHLPStvdPDAHNFLLRRQQQHQCWS 258
                 444443233444444444666888999999999998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mon1 323 eeerkrllklYqklhasvheklkllyeesekltllawvtssfelYlvfnplvskkaliksankilkwikkeeerlFisega 403
                 + ++  ++++Y +lh+ ++  l+++y+ +++ +ll +v +++e  +v++     ++ i s+   l+w  ++e+ lF++++a
  CDO71787.1 485 KPSTVAFFNCYIRLHQILAFALRTIYSINKSKALLGFVGQQWEQHIVAELDSALNKWIDSVPDHLRWDPNRENLLFLNQSA 565
                 555558899**********889*******************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5653.78
//
Query:       CDO71788.1  [L=223]
Description: hypothetical protein BN946_scf184939.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1695.33
//
Query:       CDO71789.1  [L=660]
Description: hypothetical protein BN946_scf184939.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-15   55.5   0.0    1.4e-14   54.6   0.0    1.4  1  AAA              ATPase family associated with various cellul
      1e-10   41.5   0.0      2e-10   40.6   0.0    1.5  1  BAH              BAH domain
    4.6e-10   40.1   0.0    1.7e-09   38.3   0.0    1.9  1  AAA_16           AAA ATPase domain
    1.5e-06   28.5   0.0    2.6e-06   27.7   0.0    1.4  1  AAA_22           AAA domain
    0.00066   19.9   4.8     0.0012   19.1   4.8    1.3  1  YL1              YL1 nuclear protein
     0.0012   19.2   0.0     0.0025   18.1   0.0    1.6  1  AAA_19           AAA domain
     0.0085   15.4   0.0      0.015   14.6   0.0    1.3  1  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.041   13.7   0.0    1.4  1  AAA_11           AAA domain
      0.021   14.7   0.0       0.24   11.3   0.0    2.0  2  ATPase_2         ATPase domain predominantly from Archaea
      0.049   13.5   0.0       0.11   12.4   0.0    1.6  1  NACHT            NACHT domain
      0.049   13.3   0.0      0.091   12.5   0.0    1.5  1  AAA_30           AAA domain
      0.069   13.2   0.0       0.16   12.0   0.0    1.6  1  NHase_beta       Nitrile hydratase beta subunit
       0.13   12.2   0.0       0.23   11.4   0.0    1.4  1  NTPase_1         NTPase
       0.14   12.7   0.0       0.29   11.7   0.0    1.5  1  AAA_18           AAA domain
       0.15   11.3   0.0       0.22   10.7   0.0    1.2  1  TIP49            TIP49 P-loop domain
       0.15   11.1   0.0       0.22   10.6   0.0    1.2  1  T2SSE            Type II/IV secretion system protein
       0.27   10.4   0.0       0.41    9.8   0.0    1.2  1  PIF1             PIF1-like helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.3e-17   1.4e-14       1     123 [.     460     609 ..     460     613 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.3e-17
                 EEEESSTTSSHHHHHHHHHHHHT..........HEEEEEETTTCSSS........................STTHHHHHHHHHHHHHHHTS....TSEE CS
         AAA   1 vllyGppGtGKTllakavakelg..........vefleisgsellsk........................yvgesekkirelfkeakeka....kpsi 61 
                 ++++G pGtGKT++++av++el+          + f+ei+g ++ +                           +e+ + +++ f+ a +      + ++
  CDO71789.1 460 IYISGVPGTGKTATVHAVVRELKrmaeqneanpFAFVEINGLKIPEPaaaygllweavsghdaardghmkiSAKEALRLLSNHFSGAARVGpaggHACV 558
                 5899*****************96444444444566**********779*******************999888888899999998876666899555** PP

                 EEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTT CS
         AAA  62 lfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgR 123
                 +++DE+d+l++s+           +++ ++++++ +   sk++v++++n++d +++ + r R
  CDO71789.1 559 VLMDELDQLMTSK-----------QDVVYNFFNWPTLAGSKLVVLAVANTMDLPERVMSRAR 609
                 *************...........***************************99988777655 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.9e-13     2e-10       3     116 ..     104     219 ..     102     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.9e-13
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTST...CEEEEEEEEEEECGGGS..TTTTHCCCTTEE.EEEEEEEEEEGGGEEEEEEEEEHHHHCTECC CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakne...eaeatvlvdwflrpeet..ksalklrqkrEl.fltrqseilplaairgkcrVvllsdleeaqn 95 
                 ++vGd V++  +s    ++++ I   ++ + ++   +a  +v+v+wf+rp+e    +a+++++++E+ +  + +e+lp +ai  +c V        a++
  CDO71789.1 104 FKVGDTVLVRTAS--TLPSVAVIIAVWKIEGEQyraKAPLHVRVHWFVRPSELpkIRARRAFYENEVlYNIAACETLPPSAILAHCHVSPDPAKAIASP 200
                 79*********99..7788888888888888888779999*************98799999***986266677*****************999999999 PP

                 HCHHCSTTEEEEEEEEETTTT CS
         BAH  96 ylpkklddtFycslvydptak 116
                 +     +d++yc+ ++dp ++
  CDO71789.1 201 EDA--TPDVLYCRQAVDPMRG 219
                 998..************9876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.6e-12   1.7e-09       2     164 ..     434     584 ..     433     592 .. 0.68

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.6e-12
      AAA_16   2 lvGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 l++Re+e  ++l+a+e  + +g+++++++sG +G+GK++ v ++ r+l++      +++++ +    p+       a+ e+      e+++a    w +
  CDO71789.1 434 LPCREAEYGRVLRAVEeLLEEGSGGCIYISGVPGTGKTATVHAVVRELKRM-----AEQNEAN----PF-------AFVEINGLKIPEPAAAYGLLWEA 516
                 89**************55555666*********************999987.....3333444....22.......22233344444434444444444 PP

      AAA_16 100 kleeala..avpelagaea.srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                      +a     +++++ea + l ++++ +++  + +++  v+++D+l+++ ++ +++ ++++  ++ 
  CDO71789.1 517 VSGHDAArdGHMKISAKEAlRLLSNHFSGAARVGPAGGHACVVLMDELDQLMTSKQDVVYNFFNWPTL 584
                 333333322222233333356888999999999999999*****************999998876655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.5e-09   2.6e-06       4     112 ..     456     579 ..     452     604 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.5e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka....erlsseellealeqalrarav..... 91 
                 + g++++ G +GtGKT ++  ++++l++ a+++e++ +++fv++++++  +++  +  l +a+     a       s +e l++l ++++ +a+     
  CDO71789.1 456 SGGCIYISGVPGTGKTATVHAVVRELKRMAEQNEAN-PFAFVEINGLKipEPAAAYGLLWEAVSGHDAArdghMKISAKEALRLLSNHFSGAARvgpag 553
                 789***********************9888887744.4455555555555555555555555554444455585556666666666666666666888* PP

      AAA_22  92 ..ielliiDEaqhlr..s.eealeeL 112
                     +++ DE + l+  + + +++++
  CDO71789.1 554 ghACVVLMDELDQLMtsKqDVVYNFF 579
                 *99**********9875234444443 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   4.8   1.1e-06    0.0012      20     124 ..     284     390 ..     264     403 .. 0.50

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  20 eedelellFaEeedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkr....kkekkkrkaqkkkskkkkkkqkkkkkkkidp 114
                 +edel + F +++  +efe+  +++ +  +D+d+d +eed+           e e + + r+kr     + +++ + +++++++++ + ++ ++ +  p
  CDO71789.1 284 DEDELSE-FSDDASGDEFEAPLNDDSD--VDEDVDNNEEDDV--------VAELEPRTPSRRKRkragTSTPRTPRTPRRTASATT-TTATPRRGR--P 368
                 3677766.8888888888887776554..6666666666554........333333333333331223333333332222222222.111222221..1 PP

                 ...........xxxxx..xxxxx RF
         YL1 115 ...........qakep..rpkkk 124
                            ++ ++  r++kk
  CDO71789.1 369 pkdaslahptpHS-KAalRKRKK 390
                 2344444432211.111233333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.4e-06    0.0025       9      41 ..     456     488 ..     447     572 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.4e-06
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvk 41 
                 + +++ + + pGtGKT +++++v++l+++ +++
  CDO71789.1 456 SGGCIYISGVPGTGKTATVHAVVRELKRMAEQN 488
                 567999*********************998764 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.015       3     102 ..     459     569 ..     458     582 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllael...eddeeertavylsvNhplvl.......vlrealakke...ekkkkkeafeklssfinnlsefkkaeekkeepk 88 
                 ++ ++Gv+GtGKt    +++ el    +++e +  +++  N+  +         l ea+++++    ++ k +a e l+ + n +s    a    +  +
  CDO71789.1 459 CIYISGVPGTGKTATVHAVVRELkrmAEQNEANPFAFVEINGLKIPepaaaygLLWEAVSGHDaarDGHMKISAKEALRLLSNHFS--GAARVGPAGGH 555
                 5789*******************633333333333344444322223333333333444444444222222233333333334444..44444555667 PP

     DUF2075  89 edvvivDEAhrllt 102
                 ++vv++DE   l+t
  CDO71789.1 556 ACVVLMDELDQLMT 569
                 77777777555544 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.9e-05     0.041       8      46 ..     446     486 ..     444     501 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-05
      AAA_11   8 eaiksalsese..itliqGPPGtgKTktivellsqllsrrk 46 
                 +a+++ l+e +     i+G PGtgKT t+ +++++l  +++
  CDO71789.1 446 RAVEELLEEGSggCIYISGVPGTGKTATVHAVVRELKRMAE 486
                 5777777777777889****************999943322 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.24       8      47 ..     445     484 ..     437     500 .. 0.90
   2 ?    1.0   0.0      0.31   3.2e+02     120     147 ..     557     580 ..     520     596 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
    ATPase_2   8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienledk 47 
                 l+ +ee+le+++   ++i G  g GKta +  ++ +l+  
  CDO71789.1 445 LRAVEELLEEGSGGCIYISGVPGTGKTATVHAVVRELKRM 484
                 899*******************************999765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.31
    ATPase_2 120 iiiiiDelqklidlglngaellvkeLln 147
                  ++++Del +l   +++  +++v++++n
  CDO71789.1 557 CVVLMDELDQLM--TSK--QDVVYNFFN 580
                 79**********..655..899999998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001      0.11       3      39 ..     460     496 ..     459     601 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFf 39 
                 + + G +G GKT+ ++ +++++++   +++a ++ F+
  CDO71789.1 460 IYISGVPGTGKTATVHAVVRELKRMAEQNEANPFAFV 496
                 6799********************9999888777775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.6e-05     0.091       9      43 ..     447     483 ..     445     569 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.6e-05
      AAA_30   9 avealltsgd.rvavltGpAGtGKttalkal.reawe 43 
                 ave+ll++g   +  + G++GtGKt ++ a+ re+ +
  CDO71789.1 447 AVEELLEEGSgGCIYISGVPGTGKTATVHAVvRELKR 483
                 6777776654147789***********9998444443 PP

>> NHase_beta  Nitrile hydratase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.16     103     145 ..      72     116 ..      46     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
  NHase_beta 103 a..eakpaaaeqvaavlakgdsakreaaaepkFavGdaVrvrnls 145
                 +  +++p +++ v  + + + + k +++++++F+vGd+V vr+ s
  CDO71789.1  72 KrgSNAPPSRAPVRTYGRVSRPRKSDTNTTAEFKVGDTVLVRTAS 116
                 34455566689999999************************9865 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.23       2      25 ..     460     483 ..     459     488 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
                 EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellks 25 
                 ++i+G pG+GKt  v+ v+++lk+
  CDO71789.1 460 IYISGVPGTGKTATVHAVVRELKR 483
                 89********************86 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00027      0.29       1     100 [.     460     593 ..     460     613 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00027
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf...............gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss.......aleegk 75 
                 I ++G+pG+GKt   +++ ++l  +               g ++ + a+  gll+e     +  +   +++   +++l++l ++ s       a +++ 
  CDO71789.1 460 IYISGVPGTGKTATVHAVVRELkRMaeqneanpfafveinGLKIPEPAAAYGLLWEAVSGhDAARDGHMKISA-KEALRLLSNHFSgaarvgpAGGHAC 557
                 789**********999998887444776666666666666666655555555555555555222222222222.3344444444445556666556666 PP

      AAA_18  76 nlvidghlaeleseaakdikk...........vvLt 100
                 ++++d + + + s +++ +++           vvL 
  CDO71789.1 558 VVLMDELDQLMTSKQDVVYNFfnwptlagsklVVLA 593
                 666666666666666666665555555555555555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.22      44      76 ..     453     483 ..     419     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  44 kekklaGravLlaGpsgtGktalaiaiskelge 76 
                 +e+  +G ++ ++G +gtGkta   a+ +el +
  CDO71789.1 453 EEG--SGGCIYISGVPGTGKTATVHAVVRELKR 483
                 444..599*********************9975 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00021      0.22     114     156 ..     444     484 ..     356     489 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
       T2SSE 114 lkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 +  +++e+l++   + g i +sG  g+GKt ++ a++ e++  
  CDO71789.1 444 VLRAVEELLEEG--SGGCIYISGVPGTGKTATVHAVVRELKRM 484
                 337888889888..899*********************99876 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00039      0.41       8      48 ..     443     483 ..     438     505 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00039
                 HHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC CS
        PIF1   8 kvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs 48 
                 +v++a+ e + + +g+ ++++G  GtgKt   +a++  l+ 
  CDO71789.1 443 RVLRAVEELLEEGSGGCIYISGVPGTGKTATVHAVVRELKR 483
                 6888888888899****************999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 4369.34
//
Query:       CDO71790.1  [L=803]
Description: hypothetical protein BN946_scf184939.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00021   21.1   0.1    0.00052   19.8   0.1    1.8  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.033   14.1   0.1       0.09   12.7   0.1    1.8  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   5.8e-08   0.00052       2      35 ..       4      37 ..       3      48 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.8e-08
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrva 35
                +++P+E+L +I+syLp  d+l++ l+ +    ++
  CDO71790.1  4 ASIPNELLQEILSYLPKPDMLNIVLTAKGISLIV 37
                689*******************999988776666 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     1e-05      0.09       3      28 ..       3      28 ..       1      48 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1e-05
                HHHS-HHHHHHHHHTS-HHHHHHHCT CS
       F-box  3 lsrLPsevlrhILerLplsdllalrr 28
                l + P+e+l +IL++Lp  d l++ +
  CDO71790.1  3 LASIPNELLQEILSYLPKPDMLNIVL 28
                6789*************999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 5369.82
//
Query:       CDO71791.1  [L=500]
Description: hypothetical protein BN946_scf184939.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        0.8   10.1   7.6        1.3    9.5   0.1    2.4  2  CENP-B_dimeris  Centromere protein B dimerisation domain
          1    9.0   3.7        1.4    8.6   0.6    2.3  2  FAM176          FAM176 family


Domain annotation for each model (and alignments):
>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00014       1.3      28      54 ..      23      49 ..      21      59 .. 0.84
   2 ?    1.8   3.6     0.035   3.1e+02      27      39 ..     437     449 ..     423     461 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
  CENP-B_dimeris 28 ededeeddedddevpvpsfgeamayfa 54
                    e++d++dde  +evp+  +g+ ++ + 
      CDO71791.1 23 ENDDDHDDESIEEVPIGPYGNVFSQVN 49
                    78999***************9877665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.035
  CENP-B_dimeris  27 eededeeddeddd 39 
                     +ed+  ed+ed+d
      CDO71791.1 437 DEDDSSEDEEDED 449
                     2222222222222 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.057   5.1e+02     114     129 ..     357     372 ..     354     382 .. 0.79
   2 ?    8.6   0.6   0.00015       1.4      69     111 ..     435     476 ..     416     496 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.057
      FAM176 114 qRlEeReriirEIWrn 129
                 +R E+Rerii  + ++
  CDO71791.1 357 DRSERRERIIDALRME 372
                 689*******877665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00015
      FAM176  69 sededeeeeeeeedsseseaeeelsefertlsvnvftsaeele 111
                  +ded+ + e+eed+  s++ +el+ ++  +s++ ++ aee++
  CDO71791.1 435 FNDEDDSS-EDEEDEDWSRTWDELRGTDHFVSYTWWQVAEEAD 476
                 33444444.4444444455578999999999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3641.16
//
Query:       CDO71792.1  [L=517]
Description: hypothetical protein BN946_scf184939.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4031.36
//
Query:       CDO71793.1  [L=642]
Description: hypothetical protein BN946_scf184939.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.082   13.1   0.2       0.34   11.2   0.0    2.2  2  Hairy_orange  Hairy Orange


Domain annotation for each model (and alignments):
>> Hairy_orange  Hairy Orange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.39   7.1e+03       8      14 ..     316     322 ..     316     323 .. 0.84
   2 ?   11.2   0.0   1.9e-05      0.34       8      21 ..     522     535 ..     521     566 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.39
  Hairy_orange   8 eCakEVs 14 
                   +C++EV+
    CDO71793.1 316 MCITEVL 322
                   5*****7 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.9e-05
  Hairy_orange   8 eCakEVsrfLaspe 21 
                   +Ca+EV+r La+p+
    CDO71793.1 522 HCATEVHRLLANPT 535
                   7************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4549.16
//
Query:       CDO71794.1  [L=139]
Description: hypothetical protein BN946_scf184939.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.014   14.6   2.6      0.014   14.6   2.6    2.0  2  Med3            Mediator complex subunit 3 fungal
      0.084   12.7   0.3      0.084   12.7   0.3    1.9  2  Tir_receptor_N  Translocated intimin receptor (Tir) N-terminu


Domain annotation for each model (and alignments):
>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.6   1.6e-06     0.014     172     221 ..       6      50 ..       1      70 [. 0.71
   2 ?   -1.1   3.7     0.094   8.4e+02     195     221 ..      61      90 ..      52     110 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-06
        Med3 172 tatigtptnsaaaaattatttssqakkPrkPrqtkkaaakaaakaqaqaq 221
                 ++++++p  s  + +tt+++tss++ kPr Pr tk     +aa  q q q
  CDO71794.1   6 SSNLSSP--SLVSVTTTSSATSSTPLKPRLPRSTKD---YSAAFGQLQSQ 50 
                 4556666..4455556666679*************9...44444444444 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.094
        Med3 195 qakkPrkPrqtkk...aaakaaakaqaqaq 221
                  + kPrk ++++k    ++++aa+a   a 
  CDO71794.1  61 ASSKPRKEQKKRKeegRESHSAARAGGEAT 90 
                 455677666666655533333343333222 PP

>> Tir_receptor_N  Translocated intimin receptor (Tir) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.2     0.088   7.9e+02     205     230 ..       8      33 ..       2      49 .. 0.69
   2 ?   12.7   0.3   9.3e-06     0.084     187     241 ..      67     122 ..      58     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.088
  Tir_receptor_N 205 nsaetkvvsetstststsslrsdpkl 230
                     n ++   vs t+ts++tss    p+l
      CDO71794.1   8 NLSSPSLVSVTTTSSATSSTPLKPRL 33 
                     44455567778888888887777776 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.3e-06
  Tir_receptor_N 187 kdtgeskakdresesgavnsaetkvvsetstststsslrsdpk.lwlslgtiaagl 241
                     k+++++k ++res+s+a   +e++   ++ t t++ssl s  k + l++g++++ l
      CDO71794.1  67 KEQKKRKEEGRESHSAARAGGEATRKESSVTQTAASSLPSKTKdYELAFGALSSRL 122
                     68899999***************999999***********9983559999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1024.43
//
Query:       CDO71795.1  [L=287]
Description: hypothetical protein BN946_scf184939.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.91    9.8   5.6       0.23   11.7   0.3    2.7  3  DUF423    Protein of unknown function (DUF423)


Domain annotation for each model (and alignments):
>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   1.3e-05      0.23      25      78 ..      25      77 ..       6      87 .. 0.78
   2 ?   -1.4   0.0      0.15   2.7e+03      19      54 ..     136     168 ..     125     180 .. 0.63
   3 ?   -2.8   0.1      0.43   7.7e+03      50      65 ..     193     208 ..     182     210 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
      DUF423 25 vqYqlyhalallavallaskaaasrllklagll.flaGivlFSgslyllaltgkk 78
                 ++q+  a++llav l+    +a ++++  ++l f++  ++++ s  lla++g++
  CDO71795.1 25 LTFQFSGAIGLLAVLLT--ALFAPKVYRHFTWLnFCITWLIYCISYTLLAFSGQQ 77
                6799**********999..44555665555554399999************9985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.15
      DUF423  19 esfetavqYqlyhalallavallaskaaasrllkla 54 
                 ++f  ++ Y l+ ++++ ++ + +    + + +k a
  CDO71795.1 136 NAFLLGAPYVLWLGFIITILVIGT---RHPESVKRA 168
                 457778888888887777776653...334444444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.43
      DUF423  50 llklagllflaGivlF 65 
                 ll ++gl + +G+vlF
  CDO71795.1 193 LLIMVGLDVYIGAVLF 208
                 3444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2142.65
//
Query:       CDO71796.1  [L=118]
Description: hypothetical protein BN946_scf184939.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 865.97
//
Query:       CDO71797.1  [L=168]
Description: hypothetical protein BN946_scf184939.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-37  127.7   0.2    4.1e-34  116.5   0.0    2.1  2  S10_plectin  Plectin/S10 domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.021   14.7   0.0    1.5  1  TrmB         Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   4.6e-38   4.1e-34       1      77 [.       3      79 ..       3      83 .. 0.97
   2 !    9.3   0.0   0.00013       1.1      76      92 ..     100     116 ..      94     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 4.6e-38
                 --HCHHHHHHHHCCCCSCEEEE--SS----SSS---HHHHHHHHHHCCCCTSEEEEEETTEEEEEE-HHHHHHHHHH CS
  S10_plectin  1 ipkknrkaiyeylfkegvlvakkdfelkkheelnvpnlqvikalqSLksrgyvkeqfaWrhyYytLtneGieylrey 77
                 i+k +r+ iye lfkegvlvakkdf+++kheel+vpnl+vika+qSL+s+g+vk+qf+W++yYy+Lt eG+++lre+
   CDO71797.1  3 ISKPHRRIIYEALFKEGVLVAKKDFNAPKHEELDVPNLEVIKAMQSLTSKGLVKTQFSWQWYYYVLTPEGVDFLREW 79
                 67899**********************************************************************97 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00013
                  HHHXXXXSXHHHHHXXX CS
  S10_plectin  76 eylhlpeeivPatlkks 92 
                    l+lp+eivPat+kk+
   CDO71797.1 100 VRLNLPSEIVPATHKKA 116
                  579***********985 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-06     0.021      29      65 ..      32      68 ..      10      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-06
                CCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTEEEE- CS
        TrmB 29 aeelgvprskvYevLrsLedkGlVerekgrpklYrav 65
                +eel+vp   v ++++sL +kGlV+++ +   +Y ++
  CDO71797.1 32 HEELDVPNLEVIKAMQSLTSKGLVKTQFSWQWYYYVL 68
                699**********************997765555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1240.45
//
Query:       CDO71798.1  [L=845]
Description: hypothetical protein BN946_scf184939.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-27   93.9  18.6    2.3e-09   37.4   0.8    8.7  9  LRR_4     Leucine Rich repeats (2 copies)
    7.5e-23   80.1  15.2    1.3e-13   50.5   3.6    7.2  7  LRR_8     Leucine rich repeat
    1.4e-13   49.4  13.8        4.1    8.3   0.0   10.9 11  LRR_1     Leucine Rich Repeat
    3.4e-13   48.5  23.2       0.48   10.6   0.2   10.9 11  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.062   12.8   1.5        1.1    8.8   0.1    3.1  4  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.6e-06    0.0093       3      40 ..     179     216 ..     177     221 .. 0.87
   2 !   37.4   0.8   6.4e-13   2.3e-09       1      39 [.     223     261 ..     223     266 .. 0.88
   3 !   13.1   0.1   2.8e-05       0.1       1      40 [.     298     342 ..     298     346 .. 0.79
   4 !    7.1   0.1    0.0021       7.6       5      30 ..     330     359 ..     327     370 .. 0.74
   5 ?   -1.2   0.0      0.85   3.1e+03      22      32 ..     382     392 ..     371     397 .. 0.76
   6 ?   -3.3   0.0       3.9   1.4e+04       3       8 ..     669     674 ..     667     679 .. 0.61
   7 ?    1.3   0.0      0.14     5e+02       3      15 ..     696     709 ..     682     715 .. 0.69
   8 !    9.6   0.1   0.00034       1.2       1      15 [.     736     750 ..     728     761 .. 0.73
   9 !   17.6   0.2     1e-06    0.0038       2      40 ..     779     828 ..     778     832 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.6e-06
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40 
                 LevL   +N + ++++ ++ + +Lk++dL +Nn++t l+
  CDO71798.1 179 LEVLKAWSNEIMELQPeISMFGSLKTVDL-HNNKLTALP 216
                 99**************5556*********.888999985 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 6.4e-13
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 + L+++dLs+Nqlt++p  ++ lpnL++L+Ls+N  +t l
  CDO71798.1 223 TALTSVDLSHNQLTSLPAnFWALPNLTTLNLSHN-ALTAL 261
                 579****************99**********999.55555 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 2.8e-05
                 SS--EEE--SS---E-S-..HH...H-TT.--EEE-.-S-----GG CS
       LRR_4   1 pnLevLdLsnNqltdipl..le...klpn.LkeLdLsgNnlitdld 40 
                 p+L+vL  s+N++t  +        +lp  L +LdLs+N ++++ d
  CDO71798.1 298 PRLTVLEVSHNRITAASIdhATdgpGLPLlLAKLDLSDN-PLGKSD 342
                 79************888865115666***8888***998.776655 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0021
                 EEE--SS---E-S-.HH...H-TT--EEE- CS
       LRR_4   5 vLdLsnNqltdipl.le...klpnLkeLdL 30 
                 +LdLs+N l + ++ ++    l  Lke+++
  CDO71798.1 330 KLDLSDNPLGKSDSlFRalaRLQRLKEIHM 359
                 8*********99998554424777777776 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.85
                 -TT--EEE-.- CS
       LRR_4  22 lpnLkeLdLsg 32 
                 +  Lk+LdL +
  CDO71798.1 382 FHALKVLDLEE 392
                 56799999944 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 3.9
                 --EEE- CS
       LRR_4   3 LevLdL 8  
                 L+vL+L
  CDO71798.1 669 LKVLNL 674
                 555555 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.14
                 --EEE--SS---.E CS
       LRR_4   3 LevLdLsnNqlt.d 15 
                 Le+L++ n++l  +
  CDO71798.1 696 LEELSFENCNLGdS 709
                 66666666666644 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.00034
                 SS--EEE--SS---E CS
       LRR_4   1 pnLevLdLsnNqltd 15 
                 p+L++LdLs N lt+
  CDO71798.1 736 PSLRTLDLSYNALTS 750
                 567777777777776 PP

  == domain 9  score: 17.6 bits;  conditional E-value: 1e-06
                 S--EEE--SS---E-S-HH..........H-TT..--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLsnNqltdiplle..........klpn..LkeLdLsgNnlitdld 40 
                  L++L L++N+l ++++++           lp+  L+eLdL + n i++l+
  CDO71798.1 779 GLRHLRLRGNRLNELDGFQqfaerfrgnrDLPDwkLEELDL-RDNEIGKLP 828
                 7****************7777789999988999********.655888874 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   3.6   3.7e-17   1.3e-13       2      61 .]     201     258 ..     179     258 .. 0.97
   2 !   11.8   0.2   4.4e-05      0.16       1      54 [.     298     354 ..     298     355 .. 0.85
   3 ?    0.7   0.0      0.13   4.5e+02      17      36 ..     377     394 ..     372     398 .. 0.77
   4 ?   -3.4   0.0       2.4   8.7e+03      25      33 ..     667     675 ..     661     676 .. 0.79
   5 !    8.5   0.0   0.00047       1.7      25      39 ..     736     750 ..     732     761 .. 0.78
   6 !    4.2   0.0      0.01        36      26      41 ..     779     794 ..     776     801 .. 0.59
   7 !    4.5   0.0    0.0081        29       3      19 ..     814     830 ..     813     833 .. 0.56

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3.7e-17
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L+++dL+nN+lt+l+d +F++l++L++ dLs+N+lt+l p  f+ Lp+L+ L+Ls+N L
  CDO71798.1 201 SLKTVDLHNNKLTALPD-SFRDLTALTSVDLSHNQLTSL-PANFWALPNLTTLNLSHNAL 258
                 69*************86.6999*****************.9*****************87 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.4e-05
                 TT-SEEE-TTS--SEE-TTSSTT-TT-....-EEE--SS---GGGGGGGTT--S-.EE CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnL....kvLdLsnNllttlspgafsgLpsLrsL 54 
                 p+Lt+L +s+Nr+t+ + +  ++ ++L      LdLs+N l   +   f+ L++L+ L
  CDO71798.1 298 PRLTVLEVSHNRITAASIDHATDGPGLplllAKLDLSDNPLGKSD-SLFRALARLQRL 354
                 79********************999853333789*****888774.89*****99998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.13
                 -TTSSTT-TT--EEE--SS- CS
       LRR_8  17 ddeaFkglsnLkvLdLsnNl 36 
                 +d++F+  ++LkvLdL +  
  CDO71798.1 377 SDGTFF--HALKVLDLEETY 394
                 677888..69*****98865 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.4
                 TT--EEE-- CS
       LRR_8  25 snLkvLdLs 33 
                 + LkvL+L+
  CDO71798.1 667 QTLKVLNLK 675
                 568888886 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.00047
                 TT--EEE--SS---G CS
       LRR_8  25 snLkvLdLsnNlltt 39 
                 ++L++LdLs+N lt+
  CDO71798.1 736 PSLRTLDLSYNALTS 750
                 789999999999986 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.01
                 T--EEE--SS---GGG CS
       LRR_8  26 nLkvLdLsnNllttls 41 
                 +L++L L+ N+l+ l+
  CDO71798.1 779 GLRHLRLRGNRLNELD 794
                 4555555555555553 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.0081
                 -SEEE-TTS--SEE-TT CS
       LRR_8   3 LtsLdLsnNrltsldde 19 
                 L++LdL++N + +l++e
  CDO71798.1 814 LEELDLRDNEIGKLPPE 830
                 55555555555555554 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.019        70       1      20 [.     201     219 ..     201     222 .. 0.81
   2 !    7.3   0.0    0.0026       9.2       2      18 ..     225     241 ..     224     244 .. 0.90
   3 !    6.9   0.0    0.0033        12       1      18 [.     247     264 ..     247     269 .. 0.84
   4 ?    1.2   0.0      0.26   9.3e+02       1      13 [.     299     311 ..     299     324 .. 0.81
   5 ?    4.5   0.0      0.02        72       4      20 ..     330     345 ..     328     351 .. 0.76
   6 ?   -2.3   0.0       3.5   1.3e+04       2       8 ..     385     391 ..     384     394 .. 0.87
   7 ?   -0.7   0.0         1   3.6e+03       2      13 ..     669     683 ..     668     689 .. 0.61
   8 ?    2.9   0.1     0.067   2.4e+02       2      17 ..     696     711 ..     695     716 .. 0.86
   9 ?    5.3   0.0     0.011        41       1      12 [.     737     748 ..     737     761 .. 0.83
  10 ?    4.8   0.0     0.017        60       2      12 ..     780     790 ..     779     805 .. 0.80
  11 !    8.3   0.0    0.0011       4.1       1      17 [.     813     829 ..     813     834 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.019
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +L++ dL nn l   +p+sf
  CDO71798.1 201 SLKTVDLHNNKL-TALPDSF 219
                 69**********.5667766 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0026
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L++ dLs+n+l++lp+n
  CDO71798.1 225 LTSVDLSHNQLTSLPAN 241
                 899*********99988 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0033
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 nL++L+Ls+n l+ lp +
  CDO71798.1 247 NLTTLNLSHNALTALPFS 264
                 8*********99777655 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.26
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L++L +s+n+++
  CDO71798.1 299 RLTVLEVSHNRIT 311
                 699*******984 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.02
       LRR_1   4 hLdLsnnpllglppnsf 20 
                 +LdLs+npl g++++ f
  CDO71798.1 330 KLDLSDNPL-GKSDSLF 345
                 7********.6666555 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.5
       LRR_1   2 LrhLdLs 8  
                 L++LdL+
  CDO71798.1 385 LKVLDLE 391
                 9****96 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 1
       LRR_1   2 LrhLdL...snnpll 13 
                 L++L+L   ++ p +
  CDO71798.1 669 LKVLNLkgrRSDPSF 683
                 9*****664444434 PP

  == domain 8  score: 2.9 bits;  conditional E-value: 0.067
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L++L  +n++l++ +p
  CDO71798.1 696 LEELSFENCNLGDSIP 711
                 99*********77665 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.011
       LRR_1   1 nLrhLdLsnnpl 12 
                 +Lr+LdLs+n l
  CDO71798.1 737 SLRTLDLSYNAL 748
                 69********87 PP

  == domain 10  score: 4.8 bits;  conditional E-value: 0.017
       LRR_1   2 LrhLdLsnnpl 12 
                 LrhL L++n+l
  CDO71798.1 780 LRHLRLRGNRL 790
                 9*********9 PP

  == domain 11  score: 8.3 bits;  conditional E-value: 0.0011
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L++LdL++n ++ lpp
  CDO71798.1 813 KLEELDLRDNEIGKLPP 829
                 7***********55554 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3       0.3   1.1e+03       4      16 ..     201     213 ..     201     215 .. 0.82
   2 !    7.7   0.2    0.0012       4.2       5      16 ..     225     236 ..     222     237 .. 0.91
   3 !   10.6   0.2   0.00013      0.48       3      16 ..     246     259 ..     244     260 .. 0.89
   4 !    7.4   0.0    0.0015       5.2       3      17 ..     298     312 ..     297     316 .. 0.87
   5 ?    3.5   0.1     0.026        94       6      16 ..     329     339 ..     327     341 .. 0.85
   6 ?    2.2   0.0     0.069   2.5e+02       3      18 ..     352     367 ..     350     368 .. 0.91
   7 ?   -0.4   0.0      0.45   1.6e+03       3      12 ..     667     676 ..     666     676 .. 0.87
   8 ?    1.3   0.1      0.13   4.5e+02       5      18 ..     696     709 ..     693     710 .. 0.89
   9 !   10.1   0.0    0.0002      0.72       3      18 ..     736     751 ..     736     755 .. 0.85
  10 ?    1.5   0.1      0.11   4.1e+02       5      15 ..     780     790 ..     777     791 .. 0.89
  11 !    8.2   0.0   0.00081       2.9       4      16 ..     813     825 ..     813     826 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.3
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L+++dL  N+++
  CDO71798.1 201 SLKTVDLHNNKLT 213
                 6899999999887 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt++dLs+N+++
  CDO71798.1 225 LTSVDLSHNQLT 236
                 9*********98 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00013
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++Lt+L+Ls+N ++
  CDO71798.1 246 PNLTTLNLSHNALT 259
                 79*********987 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0015
       LRR_6   3 thLteLdLsgNdIgD 17 
                 + Lt L++s+N I+ 
  CDO71798.1 298 PRLTVLEVSHNRITA 312
                 579**********96 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.026
       LRR_6   6 teLdLsgNdIg 16 
                  +LdLs+N +g
  CDO71798.1 329 AKLDLSDNPLG 339
                 58******998 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.069
       LRR_6   3 thLteLdLsgNdIgDe 18 
                 + L+e +++  dIgDe
  CDO71798.1 352 QRLKEIHMQRADIGDE 367
                 679************9 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.45
       LRR_6   3 thLteLdLsg 12 
                 ++L+ L+L+g
  CDO71798.1 667 QTLKVLNLKG 676
                 79******85 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.13
       LRR_6   5 LteLdLsgNdIgDe 18 
                 L+eL+   +++gD+
  CDO71798.1 696 LEELSFENCNLGDS 709
                 99**********96 PP

  == domain 9  score: 10.1 bits;  conditional E-value: 0.0002
       LRR_6   3 thLteLdLsgNdIgDe 18 
                 ++L++LdLs+N ++ +
  CDO71798.1 736 PSLRTLDLSYNALTSA 751
                 58**********9976 PP

  == domain 10  score: 1.5 bits;  conditional E-value: 0.11
       LRR_6   5 LteLdLsgNdI 15 
                 L++L L+gN +
  CDO71798.1 780 LRHLRLRGNRL 790
                 9********87 PP

  == domain 11  score: 8.2 bits;  conditional E-value: 0.00081
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L+eLdL++N+Ig
  CDO71798.1 813 KLEELDLRDNEIG 825
                 69**********8 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0003       1.1      60     127 ..     196     260 ..     178     269 .. 0.58
   2 ?    1.1   0.0     0.068   2.4e+02      63     116 ..     297     355 ..     293     367 .. 0.52
   3 ?   -3.1   0.0       1.4   4.9e+03      61     101 ..     664     707 ..     659     710 .. 0.73
   4 ?   -3.6   0.0       1.9     7e+03      46      57 ..     816     827 ..     813     831 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0003
       LRR_9  60 fPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtn 127
                 + ++  lkt+ l nn+++ + + + + l  l+++ l++n+l++l     +  l++l++l l +n++t+
  CDO71798.1 196 ISMFGSLKTVDLHNNKLTALPDSFRD-LTALTSVDLSHNQLTSLPA--NFWALPNLTTLNLSHNALTA 260
                 55555666666666666666555543.4556666666666666654..45556666666666555543 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.068
       LRR_9  63 lkrlktlllnnnrivriaegleevlPnl....eelvltnnelqeladl.dPlaslkkle 116
                 l rl +l ++ nri+  + + +   P l     +l l++n l +   l   la l++l+
  CDO71798.1 297 LPRLTVLEVSHNRITAASIDHATDGPGLplllAKLDLSDNPLGKSDSLfRALARLQRLK 355
                 56788888888888776665555444430001333344444443333213444444444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.4
       LRR_9  61 Pllkrlktlllnnnri...vriaegleevlPnleelvltnnelq 101
                 P+ + lk+l l+  r      i    + +lP leel + n +l 
  CDO71798.1 664 PFAQTLKVLNLKGRRSdpsFSIPSAQDVFLPLLEELSFENCNLG 707
                 78888888888877742225677778888999999998887765 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.9
       LRR_9  46 tidlsdndirkl 57 
                  +dl dn+i kl
  CDO71798.1 816 ELDLRDNEIGKL 827
                 578999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5784.42
//
Query:       CDO71799.1  [L=454]
Description: Glycoside Hydrolase Family 18 / Carbohydrate-Binding Module Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-22   79.8   2.7    9.7e-22   78.1   2.5    1.7  1  Glyco_hydro_18  Glycosyl hydrolases family 18
     0.0036   17.8   5.3     0.0036   17.8   5.3    3.0  3  CBM_5_12        Carbohydrate binding domain
  ------ inclusion threshold ------
       0.32   11.0   2.5       0.52   10.3   2.5    1.3  1  MSA-2c          Merozoite surface antigen 2c


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   2.5   1.6e-25   9.7e-22       2     309 ..      31     310 ..      30     315 .. 0.67

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.6e-25
                     EEEEEEGGGGGSS.G....C.......SHTTTESEEEEEEEEEEE............TTTEEEESSTTHH..............HHHHHHHHHHH CS
                     xxxxxxxxxxxxx.x....x.......xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxx..............xxxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygn.n....y.......lpsaklthiiyaFakidg............engkvvvsdwedl..............gnfeqlkklkk 58 
                     +++Y+++++  +  +    +        + + ++   +aF++++                         +              ++   ++++  
      CDO71799.1  31 LAVYWGQNSYGAThSdtanFqktlstyCQDDSIDAFPIAFLNVFFgpggvpsidlsnI-----------CssvddpvfsgtnmpDCSFLASDIQF 114
                     6789976665443335444255555554455666666666666553333444444441...........24445555555444423336677775 PP

                     HTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHH.......HHCT...-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  59 kknpgvkvllsiGGwtdssgfslaastdasrkkfadsvvsll.......rkyg...fDGiDidweypggnpedkenytallkelrealdkakate 143
                      +++g+ v +s+GG+t+    ++++s d+++ +f d++++++       r++g   +DGiD+d+e  g+      ++ a+++++r+    +++ +
      CDO71799.1 115 CQSKGKIVTISLGGATG---AASFTS-DDQASAFGDTIWNTFlggsssvRPFGgavLDGIDLDIE-GGS----TVHFAAFVNRIRT----LASGA 196
                     6666************8...444445.4899***************9999999************.666....779**********....77788 PP

                     STTCEEEEEEESSHHHHHHHCHHHHHHHHT..SEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHH.HHHH.HTT--GG.GEEEEEESEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxx.xxxxxxxxxxxxxx RF
  Glyco_hydro_18 144 gkkllLsaavpasasdlskgydlpkiakyl..DyvnvmtYDfhgswdnvtghhaplydaslnvdeav.keyl.kagvpak.klvlGvpfygrawa 233
                     +k+++++aa++++ +d   + +l ++ +++  D v v++Y+ +    +  ++          +d+ + ++++  + v+++ k+++G p++  a+ 
      CDO71799.1 197 NKQYYVTAAPQCPFPD---A-YLSTVLNAVafDAVYVQFYNNYCGLTSASNP--------NDWDFDLwDNWAkTQAVNKNvKIYIGAPASSTAAG 279
                     9***************...4.67777777779********888743332222........467777767999555777666*********65543 PP

                     ESSSSSSTSTTTEEEHHHHHHHHTEEEEEEEEETTTTEEEEEETTEEEEE-SHHHHHHHH.HHHHHTT.ESEEEEETG CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxx RF
  Glyco_hydro_18 234 lvsgadntkeegvlsykelkellkkakakrkydskakapyvydgeefvsyDdpksikaka.dyvkakg.lgGvmiWsl 309
                       s                                   +yv          d++++++ a +   +++ +gGvm+W++
      CDO71799.1 280 --S-----------------------------------GYV----------DASTLANIAlQTRSQYSsFGGVMLWDA 310
                     ..3...................................566..........444444444233222224666666665 PP

>> CBM_5_12  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       2.3   1.4e+04       8      14 ..      32      38 ..      32      44 .. 0.77
   2 ?   -2.5   0.5       1.7   9.9e+03      16      21 ..     349     354 ..     335     361 .. 0.62
   3 !   17.8   5.3   5.9e-07    0.0036       1      22 [.     398     419 ..     398     424 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
    CBM_5_12  8 Akwwtqg 14
                A +w+q+
  CDO71799.1 32 AVYWGQN 38
                6799997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
    CBM_5_12  16 qPatta 21 
                 +Pat++
  CDO71799.1 349 TPATSP 354
                 344444 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 5.9e-07
    CBM_5_12   1 ynGkaYqAkwwtqggqPattan 22 
                 ynG+++ Akww++g++P+++a+
  CDO71799.1 398 YNGHLWTAKWWSYGDTPGGAAG 419
                 9*****************9875 PP

>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.5   8.8e-05      0.52     101     203 ..     282     382 ..     255     397 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.8e-05
      MSA-2c 101 vkdvtglvkvckeflddesefyklvelykafatdiaalkdvteeLlkelqekkPsrtssae.tPaPsdaesaaaqPPeskpaqaPaPtspsqse.esss 197
                  +d + l+++  +  ++ s f   v l++a +   a  ++  ++ +k+  ++  s  ss++ +  P+++  + a  P ++p+ +   t+ s++   ss+
  CDO71799.1 282 YVDASTLANIALQTRSQYSSFG-GVMLWDASQ---AYANNRFDAAIKNAIRQSGSGPSSSNpVTVPTSSHTTPATSPTTQPTTTSHSTTVSPTTtVSSG 376
                 5677777777766666666666.667778777...6667889999***999987765555558888899889999998899888888887766515777 PP

      MSA-2c 198 nlqGqs 203
                    G s
  CDO71799.1 377 SCAGVS 382
                 777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3264.71
//
Query:       CDO71800.1  [L=455]
Description: Glycoside Hydrolase Family 18 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-23   82.1   4.7    1.7e-22   80.6   4.7    1.6  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   4.7   9.3e-27   1.7e-22       2     241 ..      31     302 ..      30     355 .. 0.68

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 9.3e-27
                     EEEEEEGGGGGSSG...C..........SHTTTESEEEEEEEEEEE............TTTEEEESSTTHH..............HHHHHHHHHH CS
                     xxxxxxxxxxxxxx...x..........xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxx..............xxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygnn...y..........lpsaklthiiyaFakidg............engkvvvsdwedl..............gnfeqlkklk 57 
                     +++Y+++++  +     +           + + ++ i +aF+++++                        +              ++   ++++ 
      CDO71800.1  31 LAVYWGQNSYGATHlsdVanwqkpidyyCQDDTINAIPIAFLNVFQstggfpsinlasT-----------CntddngvfagtslpNCTFLASAIE 114
                     6799987764433334415556563334559***************5555555555440...........3444454445555544444677777 PP

                     HHTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHH.......HHCT...-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  58 kkknpgvkvllsiGGwtdssgfslaastdasrkkfadsvvsll.......rkyg...fDGiDidweypggnpedkenytallkelrealdkakat 142
                       +++g+ v +s+GG+t+ ++f +a     ++++f d++++l+       r++g   +DGiD+d+e  g+       ++ ++ ++r+    a+ +
      CDO71800.1 115 YCQSRGKIVTISLGGATGAASFTSA----GQATAFGDTIWDLFlggdsqfRPFGgavLDGIDLDIE-GGN----TVFFDSFIGRIRQ---LASIA 197
                     66777************97777766....6789**************9999999************.554....679**********...33337 PP

                     TSTTCEEEEEEESSHHHHHHHCHHHHHHHHT..SEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHH.HHHHHT.T--GG.GEEEEEESEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxx.xxxxxxxxxxxxx RF
  Glyco_hydro_18 143 egkkllLsaavpasasdlskgydlpkiakyl..DyvnvmtYDfhgswdnvtghhaplydaslnvdeav.keylka.gvpak.klvlGvpfygraw 232
                      gk+++++aa++++++d     +l ++ ++   D v v++Y+     +n      +     + +d+a  ++++k  +v+++ k+++G p++  a+
      CDO71800.1 198 GGKRYYVTAAPQCPYPDA----YLGTVLNLAsfDAVYVQFYNNWCGLQN----YNN----IWAWDFASwDTWAKStSVNPNvKIYIGAPASSTAA 280
                     8****************3....56666666667********44443333....334....4999*999899**663677777*********6655 PP

                     EESSSSSS...............T CS
                     xxxxxxxx...............x RF
  Glyco_hydro_18 233 alvsgadn...............t 241
                      ++    +                
      CDO71800.1 281 GSGYV--DattlgniaiqqrgnyS 302
                     33222..11223333333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.36s 00:00:01.00 Elapsed: 00:00:00.57
# Mc/sec: 2395.22
//
Query:       CDO71801.1  [L=361]
Description: hypothetical protein BN946_scf184939.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-58  196.1   0.0    5.2e-58  195.5   0.0    1.3  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    4.3e-16   59.2   1.2    8.8e-16   58.2   1.2    1.5  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.0   5.8e-62   5.2e-58       1     172 []      46     223 ..      46     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 5.8e-62
                     SS----.GCCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHCHH.--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT.. CS
  Oxidored_molyb   1 hgavpkvdpekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkelnkk.kvkglqwgagavsnaeWtGvrlrdvLekagvkkpea. 92 
                     hg+v + d e+ +l+vdg v+ ++ +++++L++ +p+vev+a+lqCagnrrke+nk+ kv+g+ w +g+++na+W G+rlrdvL ++gv+ +++ 
      CDO71801.1  46 HGPVLEYDDETSTLQVDG-VRGSRIFTMKELREeFPRVEVVAALQCAGNRRKEMNKVkKVHGVLWYDGVICNARWAGARLRDVLLNVGVD-SDEl 138
                     7888888999********.9************99*********************665*******************************8.4433 PP

                     ...EEEEEEEEE-T.CCTEEEEEEEHHHHC..TTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb  93 ..rhvvfegadeel.eeskygasiplekal..eddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                        hv+f+++ +++ ++ +yg sipl+ka+  +ddvlLAyemng+pL+pdhGyP+R+vvpg++gar+vKw+++i++s++es++++
      CDO71801.1 139 adWHVWFASHVTKCqDDDYYGGSIPLSKAMslDDDVLLAYEMNGQPLSPDHGYPIRVVVPGYLGARWVKWVDTISLSPDESPNFY 223
                     4489*****976666999************87789***********************************************997 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.2   9.8e-20   8.8e-16      23     132 ..     264     358 ..     241     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 9.8e-20
                  -S....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEEEEESS...E.EEEEEEEETT--B--SHHH- CS
  Mo-co_dimer  23 klkeaeetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfweldvevselakekeilvravDealnvqPeemiw 120
                  +   +e+ + +kGya + g  ++ +vevs+d+G++W+ a+i+y+e k            ++w++w++ ++      +  ++ ra D+   vq +e  w
   CDO71801.1 264 SR-RDEDAILVKGYAIGRGDIQVAKVEVSIDDGATWHDAHITYQEGK------------WSWTLWQAFLDHVPP--SGVVYSRATDQHGDVQQREGKW 346
                  33.348899***********************************665............********9988774..778******************* PP

                  -TT-------EE CS
  Mo-co_dimer 121 nvlgmlnnawfr 132
                  n++g+  n+w r
   CDO71801.1 347 NMRGVAYNPWGR 358
                  **********65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2655.85
//
Query:       CDO71802.1  [L=489]
Description: hypothetical protein BN946_scf184939.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.9e-163  542.4  13.2     9e-163  542.2  13.2    1.0  1  Serinc    Serine incorporator (Serinc)
  ------ inclusion threshold ------
       0.31   11.0  14.5       0.86    9.6   0.1    4.3  4  OppC_N    N-terminal TM domain of oligopeptide transport perm
       0.39   10.5   6.4      0.093   12.5   0.3    2.8  3  DUF2214   Predicted membrane protein (DUF2214)


Domain annotation for each model (and alignments):
>> Serinc  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.2  13.2  1.5e-166    9e-163       1     429 []      26     487 ..      26     487 .. 0.93

  Alignments for each domain:
  == domain 1  score: 542.2 bits;  conditional E-value: 1.5e-166
      Serinc   1 cccgsaacslccsscpsiksststRiayalllllssivsvimlsptvekklkkl......vlCkqaeaseeCegysaVyRvcfalalfflllallligv 93 
                 +c++s+a+s++c+sc +++ss++tR+ +a++++l+s+++++m sp ++++++kl      + C+    +++C+g++aV+R+cfalalf++ll+l ligv
  CDO71802.1  26 FCFTSTAASMFCKSC-NCNSSIATRVGFAMIFCLNSMLAWLMKSPLIINQIEKLshgylkMECE----GDKCYGVLAVHRICFALALFHFLLSLSLIGV 119
                 59*************.9************************************64554432466....79***************************** PP

      Serinc  94 ksskdpRaaiqngfWflKlllllglvvlaffipnefflevw.nyvglvgaflFiliqlvLLvDfahswneswvekaeesesklwyaaLllvtlllylla 191
                 +++kd+Raaiqng+W++K+ll+l+lvv++ffipn+ff+ +w nyv+++ga +Fil++l+LLvDfahsw+e+++e++e+s+s++w+++L+++t+++y+++
  CDO71802.1 120 QNTKDKRAAIQNGWWGPKVLLWLVLVVVSFFIPNGFFM-FWgNYVAMIGASIFILLGLILLVDFAHSWSETCLENWEQSNSNFWQWVLIGSTAGMYAAT 217
                 *************************************8.************************************************************ PP

      Serinc 192 ialvvllfvffassgCslnkffislnlilcvvvsvvsilpkvqeanprsgLlqssvvslYvtYLtwsalssepddkecnpllssslegtetasvvigli 290
                 ial+ +l+ ffa+sgC+ln+ff+s+nl+lc+++++++i+p+vqe+nprsgL+qss+v++Y+tYL++sa+ ++++ ++cnpl + s  gt+ +++++g++
  CDO71802.1 218 IALTGVLYAFFAGSGCTLNRFFVSFNLALCILITIMCIHPTVQEYNPRSGLAQSSMVAVYCTYLIMSAVGNHEH-ETCNPLRRGS--GTQYTTLFLGAV 313
                 *************************************************************************7.67****9888..99********** PP

      Serinc 291 ltflcvlYstlraass..................................sqveklralkaaeeegalpesaleeeeeeeeekekeeeekkvlddekeg 355
                 +tfl+++Yst raa++                                  ++  + +al aa+e+ga+p+sal+ee     ++++++++ ++ dde++g
  CDO71802.1 314 FTFLAIAYSTSRAATQsralvgsdrkgaiqlpteaehhselgvvttqpgrTESPRYQALLAAVEAGAIPASALDEEFG---DEDEDDTAGEARDDERTG 409
                 *********************************************999664445555888999******999633222...22333346699******* PP

      Serinc 356 vsYsYsfFhfvfflaslYvmmllTnW..ispe.eael..ekvlvgsswaavWvkivssWvcllLYlWtLvAPlvlpdrd 429
                 ++Y+Y++Fh++f++ ++Yv+mllT+W  ++p+ +  +   +v++g+s++a+W+++vssW+c+lLY+W+L+AP+++p+rd
  CDO71802.1 410 TRYNYAWFHVIFAIGAMYVAMLLTDWnvVKPDsN-PNhhADVYIGRSEVAMWMRVVSSWICMLLYIWSLIAPVIMPERD 487
                 **************************99777743.2234789************************************7 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.49   2.9e+03      24      34 ..     142     152 ..     138     158 .. 0.66
   2 ?    6.6   3.0    0.0013       7.7      10      30 ..     158     178 ..     154     229 .. 0.86
   3 ?   -0.3   0.1      0.18   1.1e+03      19      29 ..     245     255 ..     242     284 .. 0.59
   4 ?    9.6   0.1   0.00014      0.86      17      38 ..     463     484 ..     460     489 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.49
      OppC_N  24 llllliaifaP 34 
                 l+l+++++f P
  CDO71802.1 142 LVLVVVSFFIP 152
                 45666777754 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0013
      OppC_N  10 FkrNklAvvglvillllllia 30 
                 F+ N +A++g  i++ll li 
  CDO71802.1 158 FWGNYVAMIGASIFILLGLIL 178
                 889************998874 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.18
      OppC_N  19 glvilllllli 29 
                 +l+il+++  i
  CDO71802.1 245 ALCILITIMCI 255
                 45555555544 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00014
      OppC_N  17 vvglvilllllliaifaPliaP 38 
                 vv+ +i +ll++ +++aP+i P
  CDO71802.1 463 VVSSWICMLLYIWSLIAPVIMP 484
                 8*******************87 PP

>> DUF2214  Predicted membrane protein (DUF2214)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.22   1.3e+03      72     102 ..     129     160 ..     118     171 .. 0.74
   2 ?   12.5   0.3   1.6e-05     0.093      17     109 ..     182     272 ..     164     280 .. 0.80
   3 ?   -1.4   0.0      0.32   1.9e+03       6      38 ..     415     449 ..     412     463 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.22
     DUF2214  72 lhnplFwlKvglfvlvglls.lyPtltfirwr 102
                 ++n ++  Kv l ++++++s ++P   f+ w 
  CDO71802.1 129 IQNGWWGPKVLLWLVLVVVSfFIPNGFFMFWG 160
                 67888889999987776665156777777775 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.6e-05
     DUF2214  17 vaalaaeavllrrelsaeevkrlalaDlvyglaallvlvtGllrvlyfgkGlafYlhnplFwlKvglfvlvgllslyPtltfirwrkalrege 109
                 +a   +e+ l + e s++++++ +l+  + g+ a+++ +tG+l +++ g G +  l+  +    ++l +l++++ + Pt++ ++ r+ l + +
  CDO71802.1 182 FAHSWSETCLENWEQSNSNFWQWVLIGSTAGMYAATIALTGVLYAFFAGSGCT--LNRFFVSFNLALCILITIMCIHPTVQEYNPRSGLAQSS 272
                 4444555555555668888999999*********************8888887..688888899****************9888777776655 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.32
     DUF2214   6 aylHll.ail.llvaalaaeavllrrelsaeevkr 38 
                 a++H++ ai  + va+l++ + +++++ + ++ ++
  CDO71802.1 415 AWFHVIfAIGaMYVAMLLTDWNVVKPDSNPNHHAD 449
                 56675514441346778888999998877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3442.93
//
Query:       CDO71803.1  [L=369]
Description: hypothetical protein BN946_scf184939.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-11   44.2   0.0    2.1e-11   43.6   0.0    1.2  1  Rad51        Rad51
    1.2e-07   31.5   0.0    1.9e-07   30.9   0.0    1.3  1  AAA_25       AAA domain
    2.2e-07   30.5   0.0    3.6e-06   26.5   0.0    2.1  1  ATPase       KaiC
     0.0018   17.8   0.0     0.0073   15.8   0.0    1.9  2  RecA         recA bacterial DNA recombination protein
     0.0021   18.5   0.0     0.0076   16.7   0.0    1.9  2  AAA          ATPase family associated with various cellular a
  ------ inclusion threshold ------
      0.027   14.9   0.3      0.066   13.6   0.1    1.8  2  AAA_16       AAA ATPase domain
      0.038   13.3   0.0       0.13   11.5   0.0    1.8  1  DnaB_C       DnaB-like helicase C terminal domain
      0.057   13.3   0.0      0.092   12.7   0.0    1.5  1  NACHT        NACHT domain
      0.059   12.6   0.0      0.089   12.0   0.0    1.2  1  NB-ARC       NB-ARC domain
      0.079   12.5   0.0       0.62    9.6   0.0    2.1  2  CobU         Cobinamide kinase / cobinamide phosphate guanylt
      0.087   13.1   0.0       0.17   12.1   0.0    1.5  1  AAA_22       AAA domain
      0.095   12.0   0.0        0.2   10.9   0.0    1.5  1  Zeta_toxin   Zeta toxin
       0.13   12.4   0.0       0.26   11.4   0.0    1.5  1  GerPB        Spore germination GerPB
       0.16   11.6   0.0       0.46   10.1   0.0    1.7  2  Terminase_6  Terminase-like family
       0.19   11.4   0.0       0.58    9.8   0.0    1.8  1  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.7e-14   2.1e-11      20     221 ..     123     327 ..      80     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.7e-14
                 --S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHT.T--HHHHGGGEEEEE--STTHH CS
       Rad51  20 ttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaery.kldkeevlenvayaRaytiehq 117
                   G  ++D+lL GG+ +  + e+ G+ +sGkt l+ +l +        + g++ +++id+ g f per   + ++  +  ++++ e+ ++  a+ ie  
  CDO71803.1 123 LVGVPEVDALL-GGFSAPRVVELSGDKGSGKTALALQLVLR----HLANVGNSSVLWIDSSGEFAPERAALMLDQItGEYSASAPERLQVSLAFDIEAV 216
                 56778889877.89*******************99999765....3457789****************988877775677788889999999****999 PP

                 HHHHHHTHHHHH...HS......-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.------------HH CS
       Rad51 118 eellqqaaalla...ed......kfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfsadpkkPigG 207
                 +e+l+++ ++++   e+        + +++Ds+t l     s     ++    ++ ++r+Lr +ad f ++v++ n+ ++ +  +  ++   ++kP +G
  CDO71803.1 217 HEVLESLRQTMSprdESaytehpTTRCIVIDSITPLLGPMLSATS--SQGHAIMTTFMRQLRAFADSFCLTVIVINNSTKMLPRNPDAVFETTRKPALG 313
                 999999999987433221111113578*********999887765..566678999********************999999888888888999***** PP

                 HHHHHH-SEEEEEE CS
       Rad51 208 lvlahasttRlalr 221
                   ++ ++   l l 
  CDO71803.1 314 PSFTFMTDATLWLS 327
                 98888777777665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.6e-10   1.9e-07      13     187 ..     120     290 ..     108     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.6e-10
      AAA_25  13 adlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal......rddarllv 105
                 +d  +  p+++ l++g+  a  ++ l G+ g+GKt+lal+l+l  +      g     +  Vl+++  +     ++R++ ++ ++      ++++rl+v
  CDO71803.1 120 DDMLVGVPEVDALLGGF-SAPRVVELSGDKGSGKTALALQLVLRHLANV---G-----NSSVLWIDSSGEF--APERAALMLDQItgeysaSAPERLQV 207
                 555667799999999*9.6899*********************999766...4.....679****977777..77888777777788889877888877 PP

      AAA_25 106 ldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralgg..densnsd...vgalvealeriarrtgaavllvh 187
                   + + e ++ + +  ++t  ++d    e a +e++  r +viD+++ +lg   + +s+     ++ ++ +l+ +a+ +  +v+++ 
  CDO71803.1 208 SLAFDIEAVHEVLESLRQTMSPRD----ESAYTEHPTTRCIVIDSITPLLGPmlSATSSQGhaiMTTFMRQLRAFADSFCLTVIVIN 290
                 754222333333333333333333....455566677**************99855555445546******************9986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     3e-09   3.6e-06       4     151 ..     125     275 ..     122     299 .. 0.62

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3e-09
      ATPase   4 gIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenak.slGwdlekleeegklaiidasesaeesaeekdk 101
                 g+++ D +l gG+   rvv ++G+ G+GKt +alq +++ ++++g+  v+  ++++ e   e+a+ +l+  + ++ ++     +++s   + +a    +
  CDO71803.1 125 GVPEVDALL-GGFSAPRVVELSGDKGSGKTALALQLVLRHLANVGNSSVL-WIDSSGEFAPERAAlMLDQITGEYSAS-APERLQVSLAFDIEA---VH 217
                 99******9.*********************************9998886.355555555555442555555555555.333333333332222...23 PP

      ATPase 102 edleelieel....aeaikeika.krvviDsitgl...ayeekeavaReilrqlvrvl 151
                 e le+l +++    ++a  e    +++viDsit+l   + ++++++  +i+ +++r+l
  CDO71803.1 218 EVLESLRQTMsprdESAYTEHPTtRCIVIDSITPLlgpMLSATSSQGHAIMTTFMRQL 275
                 3444444444111133444444446778888888754444555555555555555555 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.1e-06    0.0073      44      92 ..     132     180 ..     105     209 .. 0.77
   2 ?   -1.0   0.0       0.8   9.5e+02     151     188 ..     254     291 ..     239     301 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.1e-06
                 HTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--..EEEEESS-- CS
        RecA  44 alGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggv..aafidaeha 92 
                    +GG+   r++e+ G + sGkt+lal+++ +   + g   + +id+   
  CDO71803.1 132 L--LGGFSAPRVVELSGDKGSGKTALALQLVLRHLANVGNssVLWIDSSGE 180
                 3..47************************9987665554411445666555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.8
                 ---------HHHHHHHHHHHHHHHHHTTT--EEEEEEE CS
        RecA 151 Gemgdskvglqarlmsqalrkltgaisksntvvifinq 188
                 G m  ++ +    +m+  +r+l +  +    +vi in+
  CDO71803.1 254 GPMLSATSSQGHAIMTTFMRQLRAFADSFCLTVIVINN 291
                 56666666666778999999999999988888999886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.4e-06    0.0076       3     116 ..     144     297 ..     142     304 .. 0.81
   2 ?   -1.9   0.0       3.6   4.3e+03      48      84 ..     302     340 ..     297     356 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.4e-06
                 EESSTTSSHHHHHHHHHHH.H....THEEEEEETTTCSSS...............................STTHHHHHHHHHHHHHHHTS.....TSE CS
         AAA   3 lyGppGtGKTllakavake.l....gvefleisgsellsk...............................yvgesekkirelfkeakeka.....kps 60 
                 l+G +G GKT+la +++   l    ++++l i+ s  +                                  v e  +++r++++   e+a     ++ 
  CDO71803.1 144 LSGDKGSGKTALALQLVLRhLanvgNSSVLWIDSSGEFAPeraalmldqitgeysasaperlqvslafdieAVHEVLESLRQTMSPRDESAytehpTTR 242
                 89**********98776662444444666666666666335888888889999999999999999999999**************99888899987779 PP

                 EEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  61 ilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                 +++iD i  l +   +++s+++  ++ +++++l  + ++   ++vi++ n+ ++l+
  CDO71803.1 243 CIVIDSITPLLGPMLSATSSQGHAIMTTFMRQLRAFADSFC-LTVIVINNSTKMLP 297
                 ***********999888889999999999999999999755.78888888877776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.6
                 HHHHHHHHTS.TSEEEEEETGGGHHHHH.TTCCCHHHHH CS
         AAA  48 elfkeakeka.kpsilfiDEidalaksr.sgseseeeer 84 
                 ++f++ ++ a +ps  f+ ++    ++r +g++++++e+
  CDO71803.1 302 AVFETTRKPAlGPSFTFMTDATLWLSRRpEGESTDDGES 340
                 688888888888999999999998888884444443333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.6   7.9e+03     107     126 ..      34      53 ..      16      60 .. 0.67
   2 ?   13.6   0.1   5.5e-05     0.066      23      51 ..     138     167 ..     128     289 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.6
      AAA_16 107 avpelagaeasrllellkrl 126
                   ++l++ +++++ ++l+++
  CDO71803.1  34 HLQQLSPPLREDFVQALQDI 53 
                 46778888888888888876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.5e-05
      AAA_16  23 rpelvllsGesGvGKsslv.rellralekd 51 
                  p++v lsG++G+GK++l+ + +lr+l   
  CDO71803.1 138 APRVVELSGDKGSGKTALAlQLVLRHLANV 167
                 458899*************88888777654 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.13       5      53 ..     125     174 ..     122     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 STHHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHH.HHHHHCSTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      DnaB_C   5 gfkdLDkltsGlqkgdliiiAarpsmGktalalnia.enaavkeklpvav 53 
                 g  ++D+l++G+    ++ + +  + Gktalal+++ ++ a+  + +v+ 
  CDO71803.1 125 GVPEVDALLGGFSAPRVVELSGDKGSGKTALALQLVlRHLANVGNSSVLW 174
                 67799*****************************9956666655555554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.7e-05     0.092       1      66 [.     140     201 ..     140     275 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.7e-05
                 SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS-- CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepa 66 
                 r+v l G+ GsGKT+L+ +l+l   ++  ++   +++   s++e+  + +a  + d+++ ++ ++a
  CDO71803.1 140 RVVELSGDKGSGKTALALQLVLRHLANVGNS---SVLWIDSSGEFAPERAA-LMLDQITGEYSASA 201
                 678899***********99998766655444...55555566666666555.56666666666555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.4e-05     0.089      22      91 ..     141     238 ..     129     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.4e-05
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE..............................EEESXXHHHHHHHXXHHHHHCCCTTSSSS-STT CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrFdsvawv..............................vvsktdkseeiletilkeLslseddleekeeve 90 
                 vv l+G  G+GKt la q +   +  +    sv w+                              +vs  +++e + e +l+ L ++ + ++e +  e
  CDO71803.1 141 VVELSGDKGSGKTALALQLVLR-HLANVGNSSVLWIdssgefaperaalmldqitgeysasaperlQVSLAFDIEAVHE-VLESLRQTMSPRDESAYTE 237
                 899*************997665.344445579****9999999999999999999999999999999999999999988.8888888777666666555 PP

                 S CS
      NB-ARC  91 s 91 
                 +
  CDO71803.1 238 H 238
                 4 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.44   5.2e+02       4      22 ..     145     163 ..     143     181 .. 0.81
   2 ?    9.6   0.0   0.00052      0.62      67     126 ..     235     293 ..     221     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.44
        CobU   4 tGgarSGKSefAeklaees 22 
                 +G   SGK ++A +l+ ++
  CDO71803.1 145 SGDKGSGKTALALQLVLRH 163
                 57788*********99654 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00052
        CobU  67 lkeeekkevvLvDcltlwltnllleeeaekveekleeeveellealkelkatvvlVsnEv 126
                  +e+++++++++D++t +l  +l +++++  ++ +++ +++l + + +   tv+++ n +
  CDO71803.1 235 YTEHPTTRCIVIDSITPLLGPMLSATSSQ-GHAIMTTFMRQLRAFADSFCLTVIVINNST 293
                 44556689****************97744.444555555555555566666666666654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.17       9     120 ..     143     281 ..     137     294 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsst..sskdl.lrellralglelka.......erlsseell.ealeqalrarav.... 91 
                  + G +G+GKT l+ +l+ ++      ++  +++v+ ++ +++   +++ l l ++  ++  ++ +                 ea+++ l++ +     
  CDO71803.1 143 ELSGDKGSGKTALALQLVLRHL-----ANvGNSSVLWIDSSGEFapERAALmLDQITGEYSASAPErlqvslaF-------DiEAVHEVLESLRQtmsp 229
                 588***************9984.....44468888888888888664444446666666666666643333330.......235555555555555555 PP

      AAA_22  92 ...........ielliiDEaqhlr.......s.......eealeeLrsllnlsr 120
                            +++++iD +  l        s        + +++Lr +++  +
  CDO71803.1 230 rdesaytehptTRCIVIDSITPLLgpmlsatSsqghaimTTFMRQLRAFAD--S 281
                 555666677778888888777754455543314555555555555566665..4 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017       0.2      14      65 ..     137     189 ..     132     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
  Zeta_toxin  14 erPklillgGqpGAGKselaellk.delerqgnvvrldpDdlRelhPeyeeil 65 
                 + P ++ l+G  G+GK++la  l  + l++ gn  +l  D+  e+ Pe ++++
  CDO71803.1 137 SAPRVVELSGDKGSGKTALALQLVlRHLANVGNSSVLWIDSSGEFAPERAALM 189
                 57999*************98665505555888888888888777777766655 PP

>> GerPB  Spore germination GerPB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.26      18      51 ..     166     203 ..     159     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
       GerPB  18 svtNSSvlQiGsaGsikal.skLy.N..TGgFtepAPe 51 
                  v NSSvl i s+G+  +  + L     TG +  +APe
  CDO71803.1 166 NVGNSSVLWIDSSGEFAPErAALMlDqiTGEYSASAPE 203
                 699************97642444322349999999997 PP

>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00038      0.46       7      40 ..     149     181 ..     144     209 .. 0.91
   2 ?   -2.1   0.0       2.1   2.5e+03      32      66 ..     256     291 ..     256     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00038
                  SS-HHHHHHHHHHHHHHSSSS.-EEEEEESSHHH CS
  Terminase_6   7 qsGKTfagarellrhalgrgprnqvflsasktqa 40 
                  +sGKT + +  +lrh+++ g  ++v ++ s+++ 
   CDO71803.1 149 GSGKTALALQLVLRHLANVGN-SSVLWIDSSGEF 181
                  8*******************7.******998875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
                  EEEESSHHHHHHHHHHHHHHHHTS-T.TTS--EEEE CS
  Terminase_6  32 flsasktqareeggqfekgigelake.ildiefees 66 
                  +lsa+++q + +++ f +++ ++a++  l+++ ++ 
   CDO71803.1 256 MLSATSSQGHAIMTTFMRQLRAFADSfCLTVIVINN 291
                  578888888888888888888888887777777644 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00049      0.58       7      84 ..     144     259 ..     138     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
      AAA_24   7 iyGpsgiGKTtlakel.........gpkplfi...............dtekGlksldadkfpdie....................swedfldevvel.. 59 
                 + G+ g+GKT la++l           ++l i               d              +i+                    ++ ++l+    l  
  CDO71803.1 144 LSGDKGSGKTALALQLvlrhlanvgNSSVLWIdssgefaperaalmlD--------------QITgeysasaperlqvslafdieAVHEVLES---Lrq 225
                 7799************98888888766667773333332222222221..............2224444444455555455533333333333...355 PP

      AAA_24  60 .........aaeladyktlviDtideleelclae 84 
                          ++e ++ + +viD+i+ l   +l  
  CDO71803.1 226 tmsprdesaYTEHPTTRCIVIDSITPLLGPMLSA 259
                 5999999999**************9887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2626.61
//
Query:       CDO71804.1  [L=436]
Description: Glycosyltransferase Family 22 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-34  118.7  15.2    4.3e-34  118.5  15.2    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family
  ------ inclusion threshold ------
      0.043   13.6   1.3      0.043   13.6   1.3    2.0  2  CoxIIa           Cytochrome c oxidase subunit IIa family
        0.6   10.2   2.4        1.2    9.2   0.1    2.6  3  Phage_holin_2_1  Bacteriophage P21 holin S


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5  15.2   7.2e-38   4.3e-34      82     371 ..       8     285 ..       2     329 .. 0.79

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 7.2e-38
  Glyco_transf_22  82 yapRlllallsalidyylfravcrkygseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksss.nekylvavlliav 174
                      +++Rl+la ++a +  +l rav+r++g  ++ +++++ l++++l++ + rt++n +++l     ++l++ +    n+ +   ++   a++l+++
       CDO71804.1   8 WVVRLMLAGFNAAGLCVLRRAVSRRFGGPTSVLFVIITLTQFHLLFWMGRTLPNMFALLPGRSNVSLYLLVDRAPNSTRPsEKNVHRAIALLTF 101
                      689********************************************************99888888776555555554426667789****** PP

  Glyco_transf_22 175 lavliRptsallwlplvlflllrlvkkrsktflfliialvllvlllvlvlviliDslfYgkf.vftplnflkyNvlsnlsslyGvhPwyfYllq 267
                      ++v++R + all++p+ l+ ++r +++ s+++      ++ll+ +l +v++ l+Ds+f++k+ ++++l    +Nv++ +s+ +Gv P ++Y+++
       CDO71804.1 102 ASVVFRAELALLLVPFTLQAIVRQYATISDVL-----KVGLLAGMLSVVATTLVDSYFWQKWpLWPELYGAYFNVFEGKSAEWGVSPYHTYFSS 190
                      *********************88888877666.....777777777778899********9967999*************************** PP

  Glyco_transf_22 268 nlpnilgvlllavllgllvllsrkvsrlllllltilltLlvysllpHKElRFllpvlPlillsaavlltrlsresakvskklsllvllllfnvv 361
                       lp +l+  +++++lg l +     sr+  ll++ + ++++ s+++HKE RF+++v+P++ + aa + + l ++s   + +    +l l + ++
       CDO71804.1 191 HLPKLLLSAAPLSALGALLD-----SRVRALLVPYIAFIFLISAVGHKEWRFIIYVVPVFNIAAARGANWLPKNSLFGRLS----FLALAALIA 275
                      ********************.....558899**********************************8888886444333333....333333333 PP

  Glyco_transf_22 362 lalllglvhq 371
                         ++ ++  
       CDO71804.1 276 ANCFATFLLA 285
                      3333333333 PP

>> CoxIIa  Cytochrome c oxidase subunit IIa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   7.1e-06     0.043       4      24 ..      36      56 ..      34      57 .. 0.95
   2 ?   -4.0   0.2       2.3   1.4e+04      18      26 ..      98     106 ..      96     106 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-06
                THHHHHHHHHHHHHHHHHHHH CS
      CoxIIa  4 PtGaLavivvLtatILvFWfg 24
                Pt  L+vi+ Lt + L FW+g
  CDO71804.1 36 PTSVLFVIITLTQFHLLFWMG 56
                9999***************98 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.3
                 HHHHHHHHH CS
      CoxIIa  18 ILvFWfgvF 26 
                  L+F  +vF
  CDO71804.1  98 LLTFASVVF 106
                 577766666 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0002       1.2      35      58 ..     135     158 ..     124     160 .. 0.91
   2 ?   -2.7   0.1         1   6.2e+03      25      36 ..     228     239 ..     224     255 .. 0.71
   3 ?   -1.5   0.1      0.45   2.7e+03      24      40 ..     376     392 ..     374     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0002
  Phage_holin_2_1  35 igvlgglvigllTyltnlYFKrke 58 
                      +g+l+g++  ++T l+  YF  k+
       CDO71804.1 135 VGLLAGMLSVVATTLVDSYFWQKW 158
                      9*******************8776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
  Phage_holin_2_1  25 dklspeeWsaig 36 
                        + ++eW +i 
       CDO71804.1 228 SAVGHKEWRFII 239
                      567899999985 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.45
  Phage_holin_2_1  24 ldklspeeWsaigvlgg 40 
                      ld    + Ws ++v+ g
       CDO71804.1 376 LDSAVMDSWSPVAVVDG 392
                      56667789******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3434.10
//
Query:       CDO71805.1  [L=454]
Description: hypothetical protein BN946_scf184939.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   96.8  19.4    1.2e-27   96.8  19.4    1.8  2  MFS_1     Major Facilitator Superfamily
    0.00018   21.0   1.0    0.00018   21.0   1.0    1.9  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.14   11.9   0.4       0.24   11.2   0.4    1.3  1  TMEM61    TMEM61 protein family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8  19.4     2e-31   1.2e-27      23     339 ..       1     340 [.       1     356 [. 0.77
   2 !    4.8   0.8    0.0019        11     144     230 ..     298     391 ..     293     404 .. 0.70

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 2e-31
       MFS_1  23 laedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeerg 120
                 ++edlg+ + +++ ++t+ + g++++++p   l++r+ +  ++ ++ +l+++ +++l+ ++ ++ +l+v r+l Gl++++++pa++++i  w++++e g
  CDO71805.1   1 MQEDLGLHGNQLNYITTAWTCGYVIGQIPSNMLITRIRPSIWIPAMEVLWSVLTMVLA-SAKSFeMLVVIRFLVGLAESTFYPAIQYVIGSWYKGDELG 98 
                 789**********************************7777************34444.477777********************************** PP

       MFS_1 121 raigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee.........kgtgpaplvpawkal 203
                 +   ++ ++++lG+++   l    +  l+       W ++f+i +i+++  ++l++l +p+ p++ +++   ++e         +  g++p +p ++  
  CDO71805.1  99 KRACIFHTASALGPMFSGFLQTGAYNGLNgvhglagWKWLFIIDGIITVPIALLGFLIMPDLPSNTRPSLFYTQEqidigkkrmADIGRKPPAP-FTRK 196
                 **********************88844445888888******************99***99999999999999999999999996666666666.3333 PP

       MFS_1 204 lkdpvl..w..illialllfffgfsg....lltllply...lqevlgls..glllaglllallalvgailallagrlsdr.lgrrrrlllallllllaa 288
                 +   ++  w  + l+ l++ f   +g    + ++l ++    ++v+  +  + + +g  + ++++v+    l+ +++sd    r++++++a+   ++++
  CDO71805.1 197 KIIGFFttWhiYTLVPLYILFNNGNGpmnsMIFWLKSFnkpGHQVYTVGqiNTYPLG--IQAVQVVT---TLCYAWWSDIvRARWPPMIFAGTWSMITC 290
                 333333445643444444444344445455777777765554445544455345555..55555555...77888888875556999999999****** PP

       MFS_1 289 lglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasg 339
                 + la ++++++ +  ++++++ G+++g+ ++++la+a++l + ++  + + 
  CDO71805.1 291 VVLATTPLYEHITRRWIFYYFTGVAGGL-SGLILAWANELNGHDNEKRSFI 340
                 *********9999999999999998887.5777777776654433333333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0019
       MFS_1 144 lasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.........kgtgpaplvpawkallkdpvlw.illialllfffgfsglltll 230
                 l++++  r++fy +++v+  +  l  +l ++++ + + ++++            + +++ p+v  + ++  ++v+   + +a++ f+++ +++ t++
  CDO71805.1 298 LYEHITRRWIFYYFTGVAGGLSGL--ILAWANELNGHDNEKRSFIvancnmwayVMQAWLPIVI-FPQVEQPRVFKgNVATACINFAMMCFAMATYI 391
                 566777799977777777776333..77777777777776666657789999988888888888.99999999996545555555544444444443 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.0   2.9e-08   0.00018      19     104 ..       1      86 [.       1     163 [. 0.70
   2 ?   -1.4   0.1      0.19   1.1e+03      49      97 ..     264     318 ..     256     351 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.9e-08
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr....llagllatvllllamaltesfaaflliRflaGvasAvvlvfgss 104
                 + ++++l  +q+ ++ +a   GY +G +   +      +R+r    + a+ ++  +l++  a ++sf ++++iRfl G+a  +   ++  
  CDO71805.1   1 MQEDLGLHGNQLNYITTAWTCGYVIGQIPSNML----ITRIRpsiwIPAMEVLWSVLTMVLASAKSFEMLVVIRFLVGLAESTFYPAIQY 86 
                 678999999*******************88444....444444455999999999999999999***************98766555544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.19
       MFS_4  49 afalsagaeRlr....llaglla..tvllllamaltesfaaflliRflaGvasAv 97 
                 ++a+ ++  R r    + ag+++  t ++l++  l e+++   +  + +Gva+++
  CDO71805.1 264 CYAWWSDIVRARwppmIFAGTWSmiTCVVLATTPLYEHITRRWIFYYFTGVAGGL 318
                 5666677777775555555544311444555556666666666666677777665 PP

>> TMEM61  TMEM61 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4     4e-05      0.24      14      30 ..     256     272 ..     249     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
      TMEM61  14 vvlvaGtlcfawwseGd 30 
                  v v+ tlc+awws+  
  CDO71805.1 256 AVQVVTTLCYAWWSDIV 272
                 57799*********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3037.16
//
Query:       CDO71806.1  [L=369]
Description: hypothetical protein BN946_scf184939.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-20   72.2   0.0    4.3e-19   69.4   0.0    2.1  2  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.2e-11   45.0   0.0    2.2e-11   44.1   0.0    1.5  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   4.7e-23   4.3e-19       4      97 ..      29     128 ..      26     146 .. 0.86
   2 ?   -0.1   0.0      0.16   1.5e+03      44      98 ..     283     340 ..     267     360 .. 0.66

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.7e-23
      DIOX_N   4 idlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl....akspsfrGysrlgeektdg..kkldwkesfdlg 96 
                 +dls ++++e r+++a+ l eA r++Gffyv+n  +++e +++ f++ ++F++lP+eeK+k+      +++f Gy ++g+  +d+  + +d  e +++ 
  CDO71806.1  29 LDLSLYKTPEGRKQLATTLIEAVRNHGFFYVKNFNISQERVNRQFSIGKQFYDLPLEEKLKYvpegLDNGAFNGYVPAGRRILDPasGLRDRTEIYNIP 127
                 799977889*****************************************************76544456***************77777777777765 PP

      DIOX_N  97 t 97 
                 +
  CDO71806.1 128 K 128
                 4 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
      DIOX_N  44 idelfeaareFFalPe.eeKeklaksp..sfrGysrlgeektdgkkldwkesfdlgte 98 
                  + + ++   +F+ P  ++K++  ksp  + +G+++ + ek  + ++ ++e  + +++
  CDO71806.1 283 QEHVDRLGLLYFSRPHnDVKLETVKSPvlQREGFTQNEFEKSGNPVPTMEEWTFAKQK 340
                 5555555556777775257999988887888999986555555445555555544444 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   2.5e-15   2.2e-11      18      99 ..     206     295 ..     188     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.5e-15
                   -....---EEEEEESSSEEEEEEE-TT---EEEE...TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTGS..EEEEEEEE CS
  2OG-FeII_Oxy  18 v....ilglgahtdaslltillqddvgglevfkd...gkwlrvppvdnslivniGdallflsngryksvlHrVl.pvneger..Rvsiayfi 99 
                   +     +g ++htd +  t+l+  +v+ l++  +   g+w  v+p+d++l+vn+ dal fl++g+ +s+ HrV  p + +e+  R+ + yf 
    CDO71806.1 206 LkigrLWG-QGHTDLGSWTLLFRQPVAALQIK-NhatGEWKWVKPQDGTLTVNACDALSFLTGGYVRSTIHRVAaPPKDQEHvdRLGLLYFS 295
                   24555688.99********************5.447688***********************************888888878887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2839.12
//
Query:       CDO71807.1  [L=247]
Description: hypothetical protein BN946_scf184939.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-11   42.0  10.7    1.8e-10   40.7  10.7    1.7  1  zf-MYND     MYND finger
     0.0095   16.2   5.1      0.022   15.1   5.1    1.6  1  zf-C6H2     zf-MYND-like zinc finger, mRNA-binding
  ------ inclusion threshold ------
        3.1    7.5   7.9       0.39   10.3   0.8    2.8  3  zf_C2H2_13  Zinc finger domain


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7  10.7   3.1e-14   1.8e-10       1      38 []      30      72 ..      30      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 3.1e-14
                -TTT--....B-SC....E-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND  1 CavCgk...aealk....kCagCksvfYCskeCqradwksHkteC 38
                C +Cg       +      C+gC++++YCs++Cq+a+w+sHk+ C
  CDO71807.1 30 CDQCGAveqP--HVgrfrLCGGCMTTQYCSQDCQKAHWPSHKPIC 72
                99****8652..2245789*************************9 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   5.1   3.7e-06     0.022      25      44 ..      52      71 ..      45      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.7e-06
     zf-C6H2 25 esfFCsqeCFkknwkkHkal 44
                ++ +Csq+C k+ w++Hk +
  CDO71807.1 52 TTQYCSQDCQKAHWPSHKPI 71
                4679**************65 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.8   6.6e-05      0.39      16      24 ..      26      34 ..      22      36 .. 0.85
   2 ?    0.4   0.1     0.083     5e+02      16      23 ..      43      50 ..      35      51 .. 0.84
   3 ?   -2.3   0.1      0.59   3.5e+03       6      18 ..     126     138 ..     123     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.6e-05
  zf_C2H2_13 16 nYRvCnkCG 24
                 YRvC++CG
  CDO71807.1 26 GYRVCDQCG 34
                6******** PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.083
  zf_C2H2_13 16 nYRvCnkC 23
                 +R+C  C
  CDO71807.1 43 RFRLCGGC 50
                69***999 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.59
  zf_C2H2_13   6 liedpLdtnlnYR 18 
                 + +++L  +lnYR
  CDO71807.1 126 IRQNALLIELNYR 138
                 5568888889998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1837.95
//
Query:       CDO71808.1  [L=495]
Description: hypothetical protein BN946_scf184939.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-134  447.6   0.0   2.6e-133  445.0   0.0    1.8  1  IDO       Indoleamine 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> IDO  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.0   0.0  1.5e-137  2.6e-133       2     433 ..      34     487 ..      33     488 .. 0.90

  Alignments for each domain:
  == domain 1  score: 445.0 bits;  conditional E-value: 1.5e-137
                 HGSST-BTTTBTS.-SS--SS--G.GGHHHHHHHHTH...............HHHHHTTHHHHHHHTS----STT--SHH.HHHHHHHHHHHHHHHHHH CS
         IDO   2 ledfdvsektGFlpeeaPlerLpdeyyepWeellenl...............relieserlRekvrklpvlstdeLksee.elrrAhlvLaflahaYvw 84 
                 ++dfdv+++tGF+p+++Pl+rLp++ +epWe++l+++               +e  eser+R++v++lp+l+++eLks+e  lrr h+vL++++h+Y++
  CDO71808.1  34 AHDFDVDTRTGFMPPHPPLTRLPSA-WEPWEAALDDAidsklqhadkpglsdAEKAESERWRKSVEELPILPITELKSSEiLLRRTHHVLSWVMHFYIH 131
                 79**********************7.**************************7789**********************999****************** PP

                 TTSS---S.EE-HHHHHHHHHHHHHHTS-SS--HHHHTTSSEEESSTTS-....SSG...GGEEES--SSTTSSHHHHHHHHHHHHHHHHHHHTTHHHH CS
         IDO  85 segkkpse.vlPasiavPllevsekLelpPvltYadlvLwNfkkldeeeel...sklleldnlrilttftgtedeewFylvsvaiEargaealklmlsa 179
                 + + + ++ ++P++i++Pll+vs++L+lpPv+tY+d vL+N+  + + ++    s   el+nlr+lt+ftgt+dee+Fyl s++iE+rg+eal++m+s+
  CDO71808.1 132 TVPMSVRDiHIPPPITLPLLQVSAQLQLPPVCTYSDDVLYNWAFKAPPASKnlfSPKHELNNLRCLTLFTGTRDEEEFYLSSARIELRGVEALSIMRSI 230
                 *97555555*********************************87776554467888899**************************************** PP

                 HHHH...HTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHHS-HHHHHHTHHHHH--SSSBGG..GTT-BEETTT..E...SSEB-B---GGGG-HHHHHH CS
         IDO 180 ldea...readearvtsaLerlaevideltklLervrekcdpevFYhkiRpflaGskndaeaglpegvlyegv..eegkeevrqlsGgSagQSsliqal 273
                 +dea   ++   +r+t++L++la+vi++l+ lL +vr++cdp+vFY+ iRp+++G  +d++ +  ++++++g+  + + e++++lsG+SagQSsli+al
  CDO71808.1 231 MDEAfvgDSIAIRRITAYLKALANVIRDLQVLLGSVRQGCDPDVFYNVIRPWFKG--EDSD-PSGRKWHFDGLelDPTLEQPTELSGPSAGQSSLIHAL 326
                 ****99877669*******************************************..6655.578******998877889******************* PP

                 HHHTT--TT..................S...........................SSHHHHHHHHHGGGS-HHHHHHHHHHHT.S--HHHHHHHTT-HH CS
         IDO 274 DvfLgvehe.....rtgekaaeakkese..........................kkkaeesFleemrkYmPgphrrFLehles.aasirelvlsaesee 340
                 DvfLgv++      + g+ +++a+   +                          ++  +  Fl++m++YmP++hr+FL+hl++ ++++r+lv ++e++ 
  CDO71808.1 327 DVFLGVDQVthtnfAVGRPKTDAS---SsssndtspahsvappsapstatapsaPAPPKVPFLTRMQSYMPRHHRAFLRHLQAnPRPLRKLVEQSEDA- 421
                 ******998555553333333332...134456788999*********999876336789***********************99*******666554. PP

                 ...HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH....................S---------------BTTTHHHHHHHHHHHHHHHHT CS
         IDO 341 eeelreaYnaaveaLkelRdkHikivtlYivlparkakkeeskklaakaekeaeaeekkelekkeeseekelkGTGGtdLvpfLkqvRdeTke 433
                   +lreaY+ av+aLk++Rd+H++iv+lYi +p+r+a+                           +  ++  kGTGGtd  +f k vRd+T++
  CDO71808.1 422 --ALREAYDIAVTALKQFRDEHVRIVALYILIPSRRASGG-------------------------QPAKDAPKGTGGTDAYQFVKGVRDQTAR 487
                 ..6*********************************4332.........................34466789******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3723.26
//
Query:       CDO71809.1  [L=336]
Description: hypothetical protein BN946_scf184939.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-26   90.3   0.4    1.1e-25   89.5   0.4    1.4  1  TFIIF_beta    TFIIF, beta subunit HTH domain
    2.5e-17   63.8   0.1    1.3e-15   58.2   0.0    2.5  2  TFIIF_beta_N  TFIIF, beta subunit N-terminus
    8.6e-05   23.4   0.4    0.00017   22.4   0.3    1.6  1  Tau95         RNA polymerase III transcription factor (TF)III


Domain annotation for each model (and alignments):
>> TFIIF_beta  TFIIF, beta subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.4   1.8e-29   1.1e-25       1      65 []     226     290 ..     226     290 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.8e-29
  TFIIF_beta   1 aRmprqelldalfelFeeyqYWslkdLkaetrqPeayLkevLeeIAvlhrsGpfknkweLkpeyk 65 
                 aRmpr++lld+lf++F+e + Ws+++L+++t+qPeayLkevL+eIA+lhrsG+f+++weL  ++k
  CDO71809.1 226 ARMPRDQLLDELFRAFQERERWSIRNLRDRTQQPEAYLKEVLSEIAFLHRSGEFNGTWELMANFK 290
                 7***********************************************************98886 PP

>> TFIIF_beta_N  TFIIF, beta subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   2.3e-19   1.3e-15       6     135 .]      55     158 ..      51     158 .. 0.83
   2 ?   -2.5   0.0       1.3   7.5e+03      30      36 ..     180     186 ..     159     229 .. 0.56

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 2.3e-19
  TFIIF_beta_N   6 LvKvPkfLaekWekeeddeegielGklrikkd.tskenkkqrvklklnedlsesekiPkeYelevtnervqntyVFsEkdlkgakaasaessareea 101
                   L K+P+ L+e+W+    deeg++l+ +ri+++ +s+  ++ r+ l+l++d +++   P+eYe+e+ n++v+n++V +E++++               
    CDO71809.1  55 LQKIPRHLMERWS--AIDEEGVHLASIRIYHHaESSLGRRPRIILTLPPD-PAHPGEPDEYEMEMVNQDVENQIVIAEREKEPGT------------ 136
                   88***********..77779************655555566*******77.***************************9998555............ PP

  TFIIF_beta_N 102 akeeakkapekrktipkktaLvGrvvheaevrPv 135
                           ++ r+ti     L+G+v+hea++rP+
    CDO71809.1 137 -------GSRARTTI-----LTGSVKHEANMRPM 158
                   .......23445555.....77777777777775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
  TFIIF_beta_N  30 Gklrikk 36 
                   +++ri++
    CDO71809.1 180 TTMRIED 186
                   2333333 PP

>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3   2.8e-08   0.00017      46     118 ..     196     283 ..     136     284 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.8e-08
                 -..................--S--TT-----...HHHHHHHHHHHHHHHH-SEEEHHHHHTTS-GGGTTTHHHHGGGTEEEE-SSTTTTEE CS
       Tau95  46 k..................PtepeeelvkelkekkelqkaveelkklfeerPiwtrraLknklekkerkklklalpyvaYyfksGPWrdlw 118
                 +                  P+ ++ ++++     +  ++ ++el ++f+er  w+ r+L++++++ e   lk++l  +a+  +sG ++ +w
  CDO71809.1 196 NmltsgatnhagfnlvktkPKPQKGQFERMAR--MPRDQLLDELFRAFQERERWSIRNLRDRTQQPEA-YLKEVLSEIAFLHRSGEFNGTW 283
                 13333443444444555655555555555443..778888999********************99999.******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2414.61
//
Query:       CDO71810.1  [L=252]
Description: hypothetical protein BN946_scf184939.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1731.52
//
Query:       CDO71811.1  [L=419]
Description: Glycoside Hydrolase Family 18 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-22   81.1   2.5    5.1e-22   79.0   2.5    1.8  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   2.5   2.8e-26   5.1e-22       2     253 ..      38     325 ..      37     368 .. 0.74

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 2.8e-26
                     EEEEEEGGGGGSS.G...CSHTTTESEEEEEEEEEEETTTEEEESS.TTHH..............HHHHHHHHHHHHTSTT-EEEEEEEETTTTT CS
                     xxxxxxxxxxxxx.x...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygn.n...ylpsaklthiiyaFakidgengkvvvsd.wedl..............gnfeqlkklkkkknpgvkvllsiGGwtdss 77 
                     +++Y+++ ++ ++ +   y + + +++  +aF+ i+  +g   v d ++ +              ++   ++++k+ ++ g+ + ls+GG+t++ 
      CDO71811.1  38 LAVYWGQDSAGNQqRlshYCQDSTVDVFPIAFLYIFRGTGGEPVIDfANTCnqwdegtfpgtdlaNCTIMAADIKECQAAGKIITLSLGGATGEV 132
                     689**9888885534556688999999999*******4444444454444455555456666665555588999966667*************88 PP

                     HHHHHHTSHHHHHHHHHHHHHHH.......HHCT...-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHH.HHHH.................... CS
                     xxxxxxxxxxxxxxxxxxxxxxx.......xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................... RF
  Glyco_hydro_18  78 gfslaastdasrkkfadsvvsll.......rkyg...fDGiDidweypggnpedkenytallkelreald.kaka.................... 141
                     gfs+      ++++fad+v++l+       r++g   +DG+D+d+e  g+     ++y a+++++r+  +    +                    
      CDO71811.1 133 GFSSD----SQAESFADQVWNLFlggesdtRPFGdavLDGVDLDIE-SGT----PAHYAAFVNRIRSNAGiS--Hlnatsfalkaanstthanat 216
                     88866....6789**************9999999************.666....899**********55543..155799*************** PP

                     .................HTSTTCEEEEEEESSHHHHHHHCHHHHHHHHT.SEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHH.HHHHHT.T- CS
                     .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xx RF
  Glyco_hydro_18 142 .................tegkkllLsaavpasasdlskgydlpkiakyl.DyvnvmtYDfhgswdnvtghhaplydaslnvdeav.keylka.gv 216
                                      +++k ++++aa++++++d    y  ++++++  D v v++Y+ +   d+    ++         ++++ ++++k  ++
      CDO71811.1 217 snhanktktttpvkdvtNKNKYYYITAAPQCPYPDA---YIGAALNDAPfDAVYVQFYNNYCGLDQ----PS-------EYNFGTwDQWAKTkSA 297
                     ****************99999**************3...33444444447********99996666....22.......2233333467744244 PP

                     -GG.GEEEEEESEEEEEEESSSSSSTSTTTEEEHHHHH CS
                     xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 217 pak.klvlGvpfygrawalvsgadntkeegvlsykelk 253
                     +++ k+++G p + +++ +          g +s+++l 
      CDO71811.1 298 NPNvKVYIGAPGSSDSAGQ----------GYVSVSKLA 325
                     4445*******99887643..........333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2848.13
//
Query:       CDO71812.1  [L=108]
Description: hypothetical protein BN946_scf184939.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-11   44.9   0.2    2.9e-11   44.3   0.2    1.3  1  Cytochrom_C      Cytochrome c
    4.8e-08   33.2   2.6    5.5e-07   29.8   2.6    2.0  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
     0.0081   15.9   0.0      0.075   12.7   0.0    2.1  2  Cytochrom_C550   Cytochrome c-550 domain
  ------ inclusion threshold ------
      0.042   14.5   0.0      0.045   14.4   0.0    1.1  1  CCP_MauG         Di-haem cytochrome c peroxidase


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.2   6.5e-15   2.9e-11       1      90 [.       8     105 ..       8     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.5e-15
                  X--HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--S..........SSHHHHHHHGGGGGGG.TT--HHHHHHHHHHH CS
  Cytochrom_C   1 aarGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsap..........rddfekkkltaemparkerlteqeiadlaaYL 88 
                  a +G+ lf++ Ca+CH++++g+ ++  gp+l g+  r++++ +g s+++ +  +              +++k+ ++++m       +e++++dl+aYL
   CDO71812.1   8 ASKGAGLFKTRCAQCHTLNAGEPHKV-GPNLHGLFGRKTGQAEGYSYSAANVNKGVtwdentlfeyLENPKKYIPGTKMAFA-GLKKEKDRNDLIAYL 103
                  579*****99********99988776.8********************9977777766666666666666666666665543.67788********** PP

                  HT CS
  Cytochrom_C  89 ks 90 
                  k 
   CDO71812.1 104 KE 105
                  96 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   2.6   1.2e-10   5.5e-07       2      67 .]       7     103 ..       6     103 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.2e-10
  Cytochrome_CBB3   2 aaaaGaalykknCasCHg.....kggag.....................psla.grdwepdalvdiiknGkgaMp....afggqlsdeelwalv 64 
                      +a +Ga l+k  Ca+CH+     ++++g                     ++++ g +w++ +l+++++n k+  p    af+g  +++++++l+
       CDO71812.1   7 DASKGAGLFKTRCAQCHTlnagePHKVGpnlhglfgrktgqaegysysaANVNkGVTWDENTLFEYLENPKKYIPgtkmAFAGLKKEKDRNDLI 100
                      6889**************7755545666555555555555666666555555545577779999999999987776666899999********* PP

  Cytochrome_CBB3  65 aYl 67 
                      aYl
       CDO71812.1 101 AYL 103
                      **8 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.7e-05     0.075      22      43 ..       4      25 ..       1      41 [. 0.85
   2 ?    1.6   0.0     0.046   2.1e+02      71      83 ..      68      80 ..      42     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
                    EHHHHHHHHHHHHHHTHHHHGG CS
  Cytochrom_C550 22 seeqlkkgkklFeaeCaqCHvg 43
                    s+ +++kg  lF++ CaqCH+ 
      CDO71812.1  4 SPGDASKGAGLFKTRCAQCHTL 25
                    677899**************85 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.046
                    HHHHHHHS-B-TT CS
  Cytochrom_C550 71 alvdylknPtsyD 83
                    +l +yl+nP+ y 
      CDO71812.1 68 TLFEYLENPKKYI 80
                    6889999999984 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.9e-06     0.045      21      70 ..      16      67 ..      11     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.9e-06
                S--HHHHSGCCCTTS-SSS.SBBEG.GGEBSSS----STTGGGSSSBSTTEE CS
    CCP_MauG 21 kisCasCHdpaagftdglk.vslgv.egrlgarnaptllnaafnkglfwdgr 70
                k+ Ca+CH+++ag +++     +g  ++++g+ +  +   a +nkg++wd++
  CDO71812.1 16 KTRCAQCHTLNAGEPHKVGpNLHGLfGRKTGQAEGYSYSAANVNKGVTWDEN 67
                678******998888764434445456788888888888888999*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 823.58
//
Query:       CDO71813.1  [L=599]
Description: hypothetical protein BN946_scf184939.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-23   81.8   4.7      5e-23   81.8   4.7    2.4  2  MIS13        Mis12-Mtw1 protein family
  ------ inclusion threshold ------
          2    8.8   9.3          8    6.9   6.8    2.6  2  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te


Domain annotation for each model (and alignments):
>> MIS13  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.02   1.8e+02     189     259 ..      90     163 ..      84     166 .. 0.66
   2 !   81.8   4.7   5.6e-27     5e-23       4     296 ..     198     537 ..     195     544 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.02
                 CCCH...HH.HHHHHHTT-.----------S--...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       MIS13 189 dskdpdkeiqkekklvdse.akidsdtqepdta...qrilsdnanveskletkvDeLqdsvhkLdsaskalnels 259
                 +s++p+ ++++++++   +  k++ d  + ++     r        e ++e+ v ++q ++ +L  +s+a+ +++
  CDO71813.1  90 QSRQPSVQPPASQSSK-PPfKKLRVDGSSRAVGkakYRDITASTRAEPEVEEDVRQMQSESDTLRRRSQAAEQVA 163
                 6666777777777744.33345555555555445333333445567889****************9999988776 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 5.6e-27
                 XX.....XXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXC..CHHCCTSXTTSTCHHHHHHHHHHHHHHHHHHHC..........HTTT.T CS
       MIS13   4 sdteiilqekekkerarnkRrsslsqrGRRlSsLgtgf.tiaspHkdvpesefykhienslaeplrlrqLlnWclkralekleeka...kseskkeete 98 
                 ++t+ i+++k    ++  +Rrs    rG+R+Ss  +   +i  pH  v  + f+khi+ +l+ep+r+rqLl+Wc++ra+++l  +    +s + k++ +
  CDO71813.1 198 QETPQIEKNKIMRGDTGHRRRS-SVSRGKRISSSYETTgVISHPHTSVSVTSFFKHIDCELPEPQRARQLLIWCSNRAMNELADHGsqaSSSRRKSTNS 295
                 5789998888677776777777.667*****987666568******************************************95558874444444444 PP

                 T.HH.......HCHHHHHCCHCCHHHHCHHCHHCCHHHHHHCHHHTHCSTTGCCCSXXX....XXSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       MIS13  99 esda.......kkiarvIikeflrdlkkgkisidWeareeeeeedendteltklFedndkkklpnaknieneenlailkekikalknEikeWakllads 190
                  +d+       + i++ + ++++r l ++k+++  +     +  d     l++           n++n +n +  a +++ i++ k+E ++W++l   +
  CDO71813.1 296 GKDPpplspaqADILKRTEESLIRMLAERKVDTNVYGGAGSQSGD--GRPLRA-----------NEQNEKNRAREARFNAHIQQSKQEAEAWKELSDSY 381
                 44432222222789********************99877444444..566777...........9999999************************9777 PP

                 CH...HH.HHHHHHTT-.----------S--.................................HHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS
       MIS13 191 kdpdkeiqkekklvdse.akidsdtqepdta.................................qrilsdnanveskletkvDeLqdsvhk.Ldsaska 254
                     k++ +e + +    a  +++ +e +t+                                 +  ++  +   ++le+ +D ++  ++  L+ +++a
  CDO71813.1 382 DAHRKSVLAEMEKRRRAiASWKAKGKERATQedlddwdferrdlpeefltsgnvdlardlvfgdALKRNPLSTRLKELEFTMDRVHTFANAaLQTTRVA 480
                 7767776666555555557777777777777777799999******99999999999777776544455566666777777777766555315554444 PP

                 HHHHHHHHHHCTSTTTSSXXXXXXXXXXXXX..................XXXXXXXXX CS
       MIS13 255 lnelstqklqklsrllakrskkekkssesrkks................tkkLlrgls 296
                  ++l +  +  l++ l +rs++ +   +s   s                +++Llr ls
  CDO71813.1 481 EADLDR-RFALLNISLTSRSQSAPLGAHSDIASlssfvlptnprppvtdPQDLLRALS 537
                 444443.444677777777777776666555557777888888888888888888777 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.049   4.4e+02      42      77 ..     130     165 ..     109     204 .. 0.74
   2 ?    6.9   6.8   0.00089         8      18      84 ..     349     417 ..     342     418 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.049
  Uso1_p115_C  42 aaesqakeleaenkklekeleklraelkeekekeke 77 
                  a++  + e+e+ + ++++e ++lr + +++++ ++ 
   CDO71813.1 130 ASTRAEPEVEEDVRQMQSESDTLRRRSQAAEQVASG 165
                  556666777777778888888888777777776654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00089
  Uso1_p115_C  18 eklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelk..eekekekekqkEldD 84 
                  ++ k+++++++ +++ +++k++ +a ++ +++++a +k++  e+ek r +++  ++k ke+++q++ldD
   CDO71813.1 349 QNEKNRAREARFNAHIQQSKQEAEAWKELSDSYDAHRKSVLAEMEKRRRAIAswKAKGKERATQEDLDD 417
                  44566666777777777777778999999********************99933445555556*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3974.09
//
Query:       CDO71814.1  [L=76]
Description: hypothetical protein BN946_scf184939.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 534.04
//
Query:       CDO71815.1  [L=601]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-57  193.3   0.0    1.3e-56  192.1   0.0    1.6  2  GMC_oxred_N    GMC oxidoreductase
    1.9e-36  125.7   0.0    3.3e-36  124.9   0.0    1.4  1  GMC_oxred_C    GMC oxidoreductase
    8.3e-06   25.1   0.2    1.3e-05   24.4   0.2    1.2  1  Lycopene_cycl  Lycopene cyclase protein
    4.1e-05   23.7   0.2     0.0001   22.4   0.2    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00013   21.2   0.0    0.00032   19.9   0.0    1.6  2  FAD_binding_2  FAD binding domain
    0.00035   20.3   0.3    0.00065   19.4   0.3    1.4  1  DAO            FAD dependent oxidoreductase
     0.0013   18.0   0.0      0.002   17.4   0.0    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.016   14.4   0.0      0.038   13.2   0.0    1.6  1  Thi4           Thi4 family
       0.11   11.2   0.0       0.18   10.5   0.0    1.2  1  HI0933_like    HI0933-like protein


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   0.0   6.7e-60   1.3e-56       1     295 [.      18     324 ..      18     325 .. 0.87
   2 ?   -3.1   0.0         2   3.9e+03     167     183 ..     527     544 ..     522     549 .. 0.81

  Alignments for each domain:
  == domain 1  score: 192.1 bits;  conditional E-value: 6.7e-60
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl..imvlalalklidkklntayetepekal..........ngrrlilpaGktlGGgsvv 86 
                  +d++++ggG+ag+v+AaRLse+p+ sv vleag +  n    +++++ + + ++ ++++ + t+p+  +           +  +++ +Gk+lGG+s +
   CDO71815.1  18 FDFVIIGGGLAGCVLAARLSENPEVSVAVLEAGKSHINDPlvSIPDGWMRQAFNPEYDWLFRTKPQSRVqngittpdakPNPSFYWSRGKGLGGSSNI 115
                  699******************************99877766999999999*************999765111111111156789************** PP

  GMC_oxred_N  87 NwsayiRtpaadldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcGvcllgv 184
                  N+  ++R++++ +d  e+  g++gw+++++ +a k+ e  + +e+ ++     l   ++    +p +  + +a    G+pv +d+ g++ +G    ++
   CDO71815.1 116 NFLFWTRPSREEVDAVEKL-GNPGWNWQRFFKAAKRCE--TLVETPVSNDPDYLDLFHADSVGHPVSLSMTQALAAYGIPVIDDALGGNLSGTFKCPN 210
                  ***************9999.******************..66667777777788887778888999999***********888888876666655554 PP

  GMC_oxred_N 185 ..tcrtgarqstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvd 280
                     +rtg r+ +a+++L pal+rpnl +lt+a++++i+ ++++++av+ +++ k+g+ +  v   +e ++++++++sP++L++SG+G++e L+ +g+ 
   CDO71815.1 211 niDTRTGTRSTAATSYLYPALARPNLSVLTDAYVTRILTSKEEDQAVAKAVEFKHGGGTYAVKVGREAILSSSTVKSPHILELSGIGNHEILERLGIP 308
                  3589***********************************88888888766666666656999999********************************* PP

  GMC_oxred_N 281 vvvdlp.vGknLqdHp 295
                  vv dlp vG+nLqdH+
   CDO71815.1 309 VVADLPgVGENLQDHL 324
                  ***************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2
  GMC_oxred_N 167 vprdlngk.hqcGvcllg 183
                  v+++++   h cG c + 
   CDO71815.1 527 VKQNVSTTwHACGTCSMM 544
                  88999999999***9985 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   1.7e-39   3.3e-36       1     142 [.     454     589 ..     454     591 .. 0.93

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 1.7e-39
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  P srG+++  s+dp+++p idpny +++ dl+ lv+alk +rk++ ++a   +   el pg+       +v++d+++++ vk++v+t++H +Gtc+M+
   CDO71815.1 454 PISRGSIHAVSKDPEVQPEIDPNYIEEDLDLELLVDALKFVRKVASEDAWkAITSGELLPGP-------DVATDDQIRENVKQNVSTTWHACGTCSMM 544
                  779*********************************************43345555555555.......9**************************** PP

                  STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHH CS
  GMC_oxred_C  98 adpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAe 142
                  +++k +VVD++l+v+g++n+rV+D S++P  + +++++ ++ +Ae
   CDO71815.1 545 PREKGGVVDPHLKVYGTKNIRVADLSTWPLLSAVHTQALVYGIAE 589
                  ********************************************9 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   6.5e-09   1.3e-05       1      36 [.      19      53 ..      19      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.5e-09
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D v+iG+G+Ag+ lAarl +++p+++v ++ea++s 
     CDO71815.1 19 DFVIIGGGLAGCVLAARL-SENPEVSVAVLEAGKSH 53
                   89****************.999***********986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   5.2e-08    0.0001       1      28 [.      22      50 ..      22      54 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.2e-08
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekr 28
                   I+G+Gl+G+v+A++L+++  ++v +le++
     CDO71815.1 22 IIGGGLAGCVLAARLSENpEVSVAVLEAG 50
                   9****************99********97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.6e-07   0.00032       1      33 [.      19      52 ..      19      68 .. 0.94
   2 ?   -2.4   0.0      0.97   1.9e+03      90     198 ..     163     281 ..     148     294 .. 0.56

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.6e-07
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeqe 33
                   D ++iG+GlAG++ A++++e+   +vav+e +++
     CDO71815.1 19 DFVIIGGGLAGCVLAARLSENPEvSVAVLEAGKS 52
                   88******************9999******9876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.97
                    HHHHHHHHHT..T----BCCTS........SB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEE..CTT CS
  FAD_binding_2  90 peavdeLeel..gvpfsrtedg........pvdvrelGglsatartlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLiv..edg 172
                    p+ +d +++   g p+s + ++        ++d +  G ls t   ++++ d r  ++ +     l++ +++    ++ +++ ++++++++  e++
     CDO71815.1 163 PDYLDLFHADsvGHPVSLSMTQalaaygipVIDDALGGNLSGT-FKCPNNIDTRTgTRSTAATSYLYPALARP---NLSVLTDAYVTRILTskEED 254
                    5555555555555555553333444444555555555666666.45555777644343333344444333333...68888888888888844333 PP

                    EEEEEEEEETTTTCEEEEEES.EEEE- CS
  FAD_binding_2 173 rvtGavvenpesgrevrirak.avvla 198
                    +++   ve++++g++ +++     +l 
     CDO71815.1 255 QAVAKAVEFKHGGGTYAVKVGrEAILS 281
                    555555666677777766655555555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   3.2e-07   0.00065       1      29 [.      19      50 ..      19      54 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.2e-07
                EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29
                d viiGGG +G+  A  L++ +   V++le+g
  CDO71815.1 19 DFVIIGGGLAGCVLAARLSENPevsVAVLEAG 50
                89******************9899******98 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06     0.002       2      42 ..      19      59 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-06
                 SEEEE--SHHHHHHHHHHHHH.TS-EEEEETTHCHHHCSHHH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqa.gakvtlvelegtclnggcll 42
                 d v+iGgG AG+ +a +l+++ ++ v+++e+++  + +++l+
   CDO71815.1 19 DFVIIGGGLAGCVLAARLSENpEVSVAVLEAGK-SHINDPLV 59
                 78******************66*******5555.55666665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.038      17      49 ..      17      49 ..       3      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                  D vi+G+G +G   a  l+++p++ va+le+
  CDO71815.1 17 TFDFVIIGGGLAGCVLAARLSENPEVSVAVLEA 49
                4699***************************97 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.8e-05      0.18       2      34 ..      19      52 ..      18      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.8e-05
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekakk 34
                 d ++iGgG AG   A+++ ++ + +V++le++k+
   CDO71815.1 19 DFVIIGGGLAGCVLAARLsENPEVSVAVLEAGKS 52
                 78*********9988888578899******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4321.11
//
Query:       CDO71816.1  [L=146]
Description: hypothetical protein BN946_scf184939.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-14   52.5   0.8    6.3e-14   52.2   0.1    1.4  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.4e-08   33.4   3.1    4.5e-08   33.4   0.1    2.2  3  Acetyltransf_7   Acetyltransferase (GNAT) domain
    9.1e-08   32.1   0.1    1.6e-07   31.3   0.1    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.1e-07   30.8   0.0    3.8e-07   30.0   0.0    1.6  1  FR47             FR47-like protein
    0.00012   22.3   0.0    0.00016   21.8   0.0    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    0.00024   21.2   0.5    0.00037   20.6   0.5    1.4  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   2.1e-17   6.3e-14      24     117 .]      21     116 ..       4     116 .. 0.84
   2 ?   -3.0   0.0       2.8   8.4e+03      68      78 ..     122     132 ..     121     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.1e-17
                     HHHHHHSTTCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  24 feesfsleaegllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklG 116
                     +  +fs+ ++ + v     g++ G+++++     +++++++  l V+peyr+ Gl+++ +  le+   e+  ++ + l+v+  n+aai++Ye +G
      CDO71816.1  21 YLGYFSRWPDMCAVqETPQGRIMGYVMGKAEGTGSERHGHVTALSVAPEYRRLGLARKFMAFLEQVSDENyRGYFVDLYVRCINTAAIHMYEGFG 115
                     55567777774444255559*************99***********************************988999****999********7799 PP

                     E CS
  Acetyltransf_1 117 F 117
                     +
      CDO71816.1 116 Y 116
                     7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
                     ESGGGTTSSHH CS
  Acetyltransf_1  68 VspeyrgkGlG 78 
                     V++ y++ GlG
      CDO71816.1 122 VKEYYQNLGLG 132
                     77889999998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.59   1.7e+03      58      69 ..      11      21 ..       2      24 .. 0.64
   2 !   33.4   0.1   1.5e-11   4.5e-08      12      75 ..      40     117 ..      27     118 .. 0.70
   3 ?   -1.8   0.1       1.5   4.4e+03      32      42 ..     122     132 ..     120     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.59
                    EEETHHHHHHHH CS
  Acetyltransf_7 58 lelnaekaikfY 69
                    l++++ +ai+fY
      CDO71816.1 11 LWTET-YAINFY 21
                    33333.89**** PP

  == domain 2  score: 33.4 bits;  conditional E-value: 1.5e-11
                     TEEEEEEEEEEES......TCTEEEEE-GGGTTSSHHHHHHHH.....TT..SEEEEEEEEE...THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld......aeitrlaVdpeyrgkGiGraLlea.....ae..kgiileqlel...naekaikfYeklGFe 75 
                     g+i+G++  + ++      ++ t l V+peyr+ G++r+ +++      e  +g+ +  l++   n+ +ai++Ye +G+ 
      CDO71816.1  40 GRIMGYVMGKAEGtgserhGHVTALSVAPEYRRLGLARKFMAFleqvsDEnyRGYFVD-LYVrciNT-AAIHMYEGFGYS 117
                     778888888888887755445555******************8655441145664323.34444444.89********96 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.5
                     E-GGGTTSSHH CS
  Acetyltransf_7  32 VdpeyrgkGiG 42 
                     V++ y++ G+G
      CDO71816.1 122 VKEYYQNLGLG 132
                     67778888887 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   5.2e-11   1.6e-07      40     113 ..      40     123 ..      29     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.2e-11
  Acetyltransf_10  40 gkivGvi..elrdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYeklGFkavgeeq 113
                      g+i+G++  +   ++       h++ l V+peyr+ G++++ + ++e+  +++  +   +l v+  + +a+ +Ye +G+ +  +++
       CDO71816.1  40 GRIMGYVmgK--AEGtgserhgHVTALSVAPEYRRLGLARKFMAFLEQVSDENYRGYfvDLYVRCINtAAIHMYEGFGYSVYRRVK 123
                      5556655331..2222234445***************************97777776899***99998***********9986654 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.3e-10   3.8e-07      20      81 ..      57     120 ..      21     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.3e-10
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfekie 81 
                   g + al v pe rr Gl+++  + l +   e  rg+ v l+v+  Nt++i++ye  G+ +++
  CDO71816.1  57 RHGHVTALSVAPEYRRLGLARKFMAFLEQVSDEnyRGYFVDLYVRCINTAAIHMYEGFGYSVYR 120
                 468999*****************9988777666789************************9983 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.5e-08   0.00016      54     146 ..      34     128 ..      23     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.5e-08
  Acetyltransf_4  54 vae..sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiasp..nensiqfhkalGFelvgifkkci 144
                     v+e  ++ri+Gy  +++ +  + + ++ ++ + +    +  gl+r+++++leqv +  n++  +  +++   n+++i +++ +G+++ +++k+++
      CDO71816.1  34 VQEtpQGRIMGYVMGKA-EGTGSERHGHVTALSVAPEYRRLGLARKFMAFLEQV-SDENYRGYFVDLYVRciNTAAIHMYEGFGYSVYRRVKEYY 126
                     677789*******9994.44456666655555444789***************9.567888888888888335569*****************99 PP

  Acetyltransf_4 145 kk 146
                     + 
      CDO71816.1 127 QN 128
                     86 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.5   1.2e-07   0.00037      73     127 ..      58     118 ..      39     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
                     EEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  73 aagvtgVavapehrgrgvlskLlaraleemree.gqplsllfP.....ssipiYrrfGyei 127
                      + vt+ +vape+r+ g+++k++a + +  +e+ +  ++ l+      ++i++Y+ fGy++
      CDO71816.1  58 HGHVTALSVAPEYRRLGLARKFMAFLEQVSDENyRGYFVDLYVrcintAAIHMYEGFGYSV 118
                     578********************9888877777666677788888887889*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1096.14
//
Query:       CDO71817.1  [L=377]
Description: hypothetical protein BN946_scf184939.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2713.43
//
Query:       CDO71818.1  [L=165]
Description: hypothetical protein BN946_scf184939.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1229.85
//
Query:       CDO71819.1  [L=439]
Description: hypothetical protein BN946_scf184939.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-14   54.4   0.0    1.2e-07   31.4   0.0    2.7  2  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   6.6e-12   1.2e-07      27     129 ..      41     165 ..      22     172 .. 0.85
   2 !   20.1   0.0   1.8e-08   0.00033     176     260 ..     245     382 ..     240     427 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.6e-12
                  ETT.STEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEE..TTEEEECCC..CBTTTCEETBSGGG...SB-EEEEEEE............... CS
  Aldose_epim  27 vpdkeqrevllgsddaeeylkdsyfgatlgrvanRianGeFel..dGkpyqlpq..neegknplHGgarg...reWeveevke............... 102
                   ++ +  ++l g +d +++l+++y   ++gr+anR   G+F +  +G++  +++  ne++  +lHGg +g    +We    ++               
   CDO71819.1  41 ADG-KTHDILIGPEDPAGHLTQKYTNTVIGRYANRLPVGSFAIerNGIHSVVSPmpNEASTVSLHGGPKGfdaYPWEPLPDPNaaelftpaelatiqt 137
                  334.358**********************************875579887777522666**************9999988888899999999999999 PP

                  ..TTEEEEEEEEEEETCHCSTSEEEEEEE CS
  Aldose_epim 103 ..ddgvtvslvlkpdgeegypgdlevrvt 129
                     ++v+++ v+ ++geegypg+l ++  
   CDO71819.1 138 rlPTSVIFRRVS-ENGEEGYPGRLLIEAL 165
                  ************.**********987765 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.8e-08
                  EEEEEEEECTTSGEEEEEEECTTCCCCC..CSSEEHCSSET..EEEEEEEESSC...............................SEEEEEETTTTEE CS
  Aldose_epim 176 eadeylevdeeliptgelkdvkgtpfdf..rqpkaigedlk..glDhayllksk...............................lkaviidpdkksg 238
                  +ad+++e+++e++ tg l +v+gt+     ++   ige+++  g+D  yl+k++                                + v+ +   ksg
   CDO71819.1 245 KADHIIELNQEGLSTGTLLPVTGTHHAHaeKATGRIGERFPdrGYDEFYLFKQReappppsvlpaselkpeldlvgaalsrdgpaSEEVASLAGGKSG 342
                  5899**********************333455667777777************9******************************************** PP

                  EEEEEETTSSEEEEEECTTTT..................S CS
  Aldose_epim 239 iklevsttepalvvytgnflk..................k 260
                  +++++st++ ++++yt n                     +
   CDO71819.1 343 LRVSFSTNQLGVQFYTNNLSVpekgarkkihggsgavgdG 382
                  ****************876556666655555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2943.59
//
Query:       CDO71820.1  [L=314]
Description: hypothetical protein BN946_scf184939.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-16   60.8   0.0      2e-16   60.1   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.5e-05   24.5   0.0    6.5e-05   24.0   0.0    1.2  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0005   19.9   0.0    0.00077   19.3   0.0    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
       0.16   11.5   0.0       0.24   10.9   0.0    1.2  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   4.6e-20     2e-16       2      88 ..     136     224 ..     135     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 4.6e-20
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET...TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadeviny...keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvv 88 
                 vG++a+qlAk +G+ +i +  s+++++l+ +lGa++vi++       +++++ +ltgg+++ +v++++  ++t   a+++l+pgG l +v
  CDO71820.1 136 VGQYAIQLAKLSGFSPIIATASPHNAQLLLSLGATHVIDRslpPA-AIKQELSKLTGGKPIEFVYDAISLPDTQAIAYDALAPGGVLLLV 224
                 9***************************************76422.6**************************************99875 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.5e-08   6.5e-05       1     129 [.     167     303 ..     167     307 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.5e-08
                   TT-SEEEETTSTTHH......HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-H CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe......aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqa 87 
                   lGA++vid   + ++      + tgg+ +  v+d++  +++ + + ++l++gG l+ ++  +++a+l k+  ++k  +v  +            ++ 
    CDO71820.1 167 LGATHVIDRSLPPAAikqelsKLTGGKPIEFVYDAISLPDTQAIAYDALAPGGVLLLVLPESIPAELKKEGDNKKIVNVFGNVHP----PenreVGV 259
                   8********95555559***9****************999967777***887998777744455555555554444444444443....24568999 PP

                   HHHHHHHHHHHHHH----EEEEEE..GGGHHHHHHHHHSS--SS CS
  ADH_zinc_N_2  88 dileelaalieeGklrpvvdrvfp..leeaaeAhrylesgrarG 129
                   ++ ++l++++++G + p   +v+p  l+ ++e +++l+++++ G
    CDO71820.1 260 QLYKHLTEWLQKGIIVPNKVEVLPngLAGIPEGLERLKNNKVSG 303
                   999**************999998877999999999999998887 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-07   0.00077       1      52 [.      31      81 ..      31      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.7e-07
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk 52
                p+evlikv+a++++  D +i      + +++p i G +++G+vee+ ++v++
  CDO71820.1 31 PKEVLIKVTATALNPVDWKIQAY-GAFIQNYPWIGGTDAAGVVEEIPDNVTE 81
                589***************99888.69********************999987 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.3e-05      0.24      30     140 ..     123     233 ..     110     250 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.3e-05
  Glu_dehyd_C  30 epesalvlG.aGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipea......seemdlvvEaTGsakhafeaiea 120
                    + a++lG + s+G  a+ l +   +g++ +  +++   p+ +++l+ +lGat v  r  p   i ++       +++++v++a   +     a +a
   CDO71820.1 123 AGKPAFILGgSSSVGQYAIQLAK--LSGFSPI--IAT-ASPH-NAQLLLSLGATHVIDRSLPPAAIKQElskltgGKPIEFVYDAISLPDTQAIAYDA 214
                  55667777525678888844444..4678754..443.3344.567999******999988877666542222224789******************* PP

  Glu_dehyd_C 121 lapnGvaaLlGvpedsevev 140
                  lap Gv  L+ +pe+  +e+
   CDO71820.1 215 LAPGGVLLLV-LPESIPAEL 233
                  ******8775.555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2177.41
//
Query:       CDO71821.1  [L=342]
Description: hypothetical protein BN946_scf184939.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-15   55.3   0.1    1.9e-14   53.8   0.0    1.7  2  ADH_zinc_N    Zinc-binding dehydrogenase
    2.9e-09   36.8   0.0    4.8e-09   36.1   0.0    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.2e-05   26.4   0.0    2.1e-05   25.6   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.42   2.5e+03      67      98 ..      70     104 ..      64     113 .. 0.72
   2 !   53.8   0.0   3.1e-18   1.9e-14       1      88 [.     174     262 ..     174     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.42
                 CSHHHHHHHHHCEEEEEEEEECSC...TSSEEEEE CS
  ADH_zinc_N  67 GsgatleaalkllkpgGrlvvvGg...gkgeeefd 98 
                 G+ +++ ++++  kpg r+v+ G+    +++++f+
  CDO71821.1  70 GIVEAVGDSVTGYKPGDRVVYEGFrsdDYNHTTFQ 104
                 66677888999999999999999875444444454 PP

  == domain 2  score: 53.8 bits;  conditional E-value: 3.1e-18
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET..TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny..keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvv 88 
                 +vG++++qlAk +G   +ia++s ++   l++++Ga++v+++  + + l e++ ++t g +v +vf+++   +t +a ++ll+pgG+l +v
  CDO71821.1 174 AVGSYVIQLAKLSGLsPIIATASLKN-KSLLESYGATHVLDRnlSATALREEVLKIT-GAPVELVFDAISLAETQNAGFDLLAPGGKLIIV 262
                 69*************66666666665.5**************853338*********.88****************************998 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     8e-13   4.8e-09       2      66 ..      32      95 ..      31     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 8e-13
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis 66
                +e+l++ +aa+++  D +i    + +  k+p +lG E +G+ve+vg++v+++k GdrVv e + s
  CDO71821.1 32 DELLVRNEAAALNPIDWKIHAY-SFFVEKYPAVLGSEGAGIVEAVGDSVTGYKPGDRVVYEGFRS 95
                7899************988887.789*********************************987665 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.6e-09   2.1e-05       2     111 ..     207     320 ..     206     337 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.6e-09
                   T-SEEEETTSTTHH......HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-HH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe......aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqad 88 
                   GA++v+d    + +      + t g+ v +v+d++  +++  a +++l++gG+l+ ++ p + ++  k   +r  ++v+    ++   +    a + 
    CDO71821.1 207 GATHVLDRNLSATAlreevlKIT-GAPVELVFDAISLAETQNAGFDLLAPGGKLIIVLFPAVDEDKTKS-GDRTIAGVSSFVNLP---QnyafA-KT 297
                   9*****88844444579996666.899*********88888*******888***999865322222222.223333333333332...145845.55 PP

                   HHHHHHHHHHHHH----EEEEEE CS
  ADH_zinc_N_2  89 ileelaalieeGklrpvvdrvfp 111
                   +++el  l+e G ++p   +v+p
    CDO71821.1 298 AFAELPGLVERGDIKPLRFEVLP 320
                   5***************9888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2395.42
//
Query:       CDO71822.1  [L=360]
Description: hypothetical protein BN946_scf184939.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-13   48.4   0.1    2.2e-12   47.1   0.0    1.6  2  ADH_zinc_N    Zinc-binding dehydrogenase
    4.2e-09   36.2   0.0    7.6e-09   35.4   0.0    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    2.9e-05   25.1   0.0    5.1e-05   24.3   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.6   3.6e+03      64      82 ..      67      85 ..      14     124 .. 0.63
   2 !   47.1   0.0   3.7e-16   2.2e-12       5      90 ..     187     273 ..     186     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.6
                ESSCSHHHHHHHHHCEEEE CS
  ADH_zinc_N 64 ecvGsgatleaalkllkpg 82
                e++G+ +++ + ++  k+g
  CDO71822.1 67 EAAGVVEAVGDDVTRFKKG 85
                3333333333444444444 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 3.7e-16
                 HHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET.TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N   5 aavqlAkalGaeviavdsseeklelakklGadeviny.kea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90 
                 aa+qlAk +G+ +i +  s +++ l++ +Ga++++++  +a  l e+++++ g +++  vf+++  ++t +aa++ll+pgG+lv+v +
  CDO71822.1 187 AAIQLAKLSGFSPIITTASLKNATLLRAIGATHILDRnLSAvALREEVAKIAG-GPILTVFDAITLPETQNAAFDLLAPGGKLVLVFF 273
                 79*********99998888889***************744458*********5.5*****************************9865 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.3e-12   7.6e-09       2      62 ..      32      91 ..      31      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.3e-12
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE- CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvve 62
                 ++l+k +a++++  D +i  +   +  k+p +lG E++G+ve+vg++v+++k+GdrV+ e
  CDO71822.1 32 RDILVKNEASALNPVDWKIQAH-GIFVEKYPAVLGMEAAGVVEAVGDDVTRFKKGDRVLYE 91
                589**************99998.7**********************************976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.6e-09   5.1e-05       1     111 [.     215     329 ..     215     353 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.6e-09
                   TT-SEEEETTSTTHH.....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe.....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadil 90 
                   +GA++++d    +++     a++ g+ +  v+d++  +++  a++++l++gG+lv +  p+  +++ k+a +r   + +    f+   +   ++++ 
    CDO71822.1 215 IGATHILDRNLSAVAlreevAKIAGGPILTVFDAITLPETQNAAFDLLAPGGKLVLVFFPS-LDEDKKNAIDRTVVTARGPIQFPQ--NveFGKQLY 308
                   599****99988888899998888999*********99999*******888***9999754.344444445455555555555542..13469**99 PP

                   HHHHHHHHHHH----EEEEEE CS
  ADH_zinc_N_2  91 eelaalieeGklrpvvdrvfp 111
                   e l+al+e+G ++p   +v p
    CDO71822.1 309 ENLTALLEAGDIKPLRVEVVP 329
                   *************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2619.13
//
Query:       CDO71823.1  [L=445]
Description: hypothetical protein BN946_scf184939.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-12   45.2   0.1    1.6e-11   44.5   0.1    1.3  1  NAD_binding_10  NAD(P)H-binding
    2.6e-08   33.7   0.0    3.8e-08   33.2   0.0    1.2  1  NmrA            NmrA-like family
    2.6e-07   30.3   0.1     0.0084   15.6   0.0    3.4  3  Epimerase       NAD dependent epimerase/dehydratase family
    1.7e-05   25.2   0.0    3.7e-05   24.2   0.0    1.5  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
    0.00043   20.4   0.0    0.00087   19.4   0.0    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
    0.00054   20.5   0.0     0.0012   19.3   0.0    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0007   18.8   0.0     0.0014   17.8   0.0    1.6  1  NAD_binding_4   Male sterility protein
  ------ inclusion threshold ------
      0.047   12.7   0.0      0.081   11.9   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1     7e-15   1.6e-11       1     128 [.      81     229 ..      81     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 7e-15
                     TTTSHHHHHHHHHHHHC-...T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-..................--TCC. CS
  NAD_binding_10   1 GAtGkvGrllvkellarg...ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal..................ggggk. 73 
                     GAtG +G  ++++ll++     +++t lvR+p+k++ l ae g+e+v+g+  + ++lae  ++ad+V+s++                      + 
      CDO71823.1  81 GATGYIGGSVLQRLLQHPkasTFQITTLVRSPQKAKTLNAEFGVEAVVGSYAELDKLAELSEQADVVFSCVrvfplrcdgriqagltarH---Sq 172
                     9***************999999*****************99******************************9999998887776665331...13 PP

                     .......HHHHHHHH...HHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHH CS
  NAD_binding_10  74 .......deegakni...vdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraae 128
                            d +++++    ++a  e+  kR +l+ + g+g  ++++         ++y+ +k + +
      CDO71823.1 173 wdqadadDLDAVQAFirgLKARHEKTGKRPILIHTSGTGVLTDHAN--------GKYASDKIYHD 229
                     4333333333355552224566677789999999988884333333........33333333333 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.7e-11   3.8e-08       1      75 [.      77     154 ..      77     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.7e-11
                 EEESSTTSHHHHHHHHHHHH....HT-EEEEEES-S-SHHHHHH.HHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG CS
        NmrA   1 IlviGaTGrqGksvvrallk....aghkvralvRdtkselaksl.keaGvelvkgdlddkeslvealkgvdvvfsvtgfy 75 
                 I ++GaTG++G+sv + ll+    + +++  lvR +++   k+l +e Gve v g+  + + l+e+ +++dvvfs + ++
  CDO71823.1  77 IFFTGATGYIGGSVLQRLLQhpkaSTFQITTLVRSPQKA--KTLnAEFGVEAVVGSYAELDKLAELSEQADVVFSCVRVF 154
                 6789***************99888999*******99865..4551578***************************98765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.16   3.5e+02     108     131 ..       7      30 ..       4      36 .. 0.85
   2 !   15.6   0.0   3.8e-06    0.0084       1      71 [.      77     150 ..      77     155 .. 0.73
   3 !    9.4   0.0   0.00029      0.65     164     229 ..     262     333 ..     245     345 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.16
                 TEEEEEEEGGGGTSCSSSSBSTCS CS
   Epimerase 108 krllflsSsevYGkdaeqpkeett 131
                 ++ll + S   YGk++++p ee +
  CDO71823.1   7 RQLLRCTSPRFYGKGEPTPSEEAS 30 
                 6889999***********999987 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.8e-06
                 EEEETTTSHHHHHHHHHHHHCT....SEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase   1 ilVtGatGfiGsalvkallekg....yevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihl 71 
                 i+ tGatG+iG  ++++ll++      ++++l r +++ +t +   +    e v + + + ++l++l +  q+d+v+ +
  CDO71823.1  77 IFFTGATGYIGGSVLQRLLQHPkastFQITTLVRSPQKAKTLN---AefgvEAVVGSYAELDKLAELSE--QADVVFSC 150
                 567******************9765444555555544444443...23456888888888888888877..99***987 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00029
                 EEEEEESEEESTTS-TTSTTSHHHHHHHHHHT.......TSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 164 aiilrlfnlyGprngegevsrvipalirkile.......gkqevtllgdgtalRdflyveDvaeaillvlehv 229
                   i+ ++++yG  +g+ ++s++  +  ++i         +     ++g+g++ +  +++eD+ae +  + ++v
  CDO71823.1 262 SYIVTPSTIYGIARGPLFDSGLANRHSAQIPGlikaslaRG-RAGVVGEGKPIWNDVHIEDLAEFYAILFDRV 333
                 56778888888886666655555544444443333333366.899*******************999888775 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.6e-08   3.7e-05       3      74 ..      78     151 ..      76     153 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.6e-08
                     EEETTTSHHHHHHHHHHHCTSS...EEEEEEEESTTTTTSBHHHHSG.GGTTTECEBEEEGGGGGCTT-SEEEE-S CS
  Semialdhyde_dh   3 aivGatGyvGqellrlLeehpe...velvvllsssrsaGkklaeavk.aleegkdlkvedvdeeelkevdivflal 74 
                      + GatGy+G  +l++L +hp+   +++++l+ s + + k+l++ ++ +   g+  ++++  +e  +++d+vf+++
      CDO71823.1  78 FFTGATGYIGGSVLQRLLQHPKastFQITTLVRSPQ-KAKTLNAEFGvEAVVGSYAELDK-LAELSEQADVVFSCV 151
                     567****************99844466777777777.99999999993222333333333.444559*******96 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.9e-07   0.00087      14      83 ..      76     151 ..      66     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.9e-07
                   EEEEES-.SHHHHHHHHHHHCC...T-CEEEEEESSHHHHHHHHHHHT.ET-..EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH  14 kvlliGa.GemaelvakhLlak...gvkkvvvaNRtlerakelaeelkgeei..ealkleelkellaeadvvisat 83 
                   k+   Ga G ++  v++ Ll++   +  +++ + R+ ++ak+l  e++ e +  ++ +l++l el ++advv+s++
    CDO71823.1  76 KIFFTGAtGYIGGSVLQRLLQHpkaSTFQITTLVRSPQKAKTLNAEFGVEAVvgSYAELDKLAELSEQADVVFSCV 151
                   5566665577777777777765433455699999*************6554433799*****************97 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.5e-07    0.0012       6      70 ..      82     152 ..      76     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.5e-07
                    TTSHHHHHHHHHHHHTTS.-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S- CS
  F420_oxidored   6 GaGnmgealasgllaaga.qpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlavk 70 
                    ++G +g +++++ll++ + +  +i+ +  r+p+ka+ l +e+g        ++  + +e+ e+advv+ +v+
     CDO71823.1  82 ATGYIGGSVLQRLLQHPKaSTFQIT-TLVRSPQKAKTLNAEFGveavvgSYAELDKLAELSEQADVVFSCVR 152
                    68**************998999999.77***************44443323333345667789*****9997 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.4e-07    0.0014       2      36 ..      80     116 ..      79     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.4e-07
                    E-TTSHHHHHHHHHHHHHS-.T..EEEEEE-SSSHHH CS
  NAD_binding_4   2 TGaTGFLGkvLlekLLrttpev..kiyllvRaksges 36 
                    TGaTG++G  +l++LL+  ++   +i+ lvR+ ++++
     CDO71823.1  80 TGATGYIGGSVLQRLLQHPKAStfQITTLVRSPQKAK 116
                    9***************99988789*******876654 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05     0.081       3      73 ..      80     150 ..      78     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
   3Beta_HSD   3 tGgaGFlGralvkeLvrleelkevrvlDlrespelleel.skvnvkkviegDvtdkdkleealegvdvvihl 73 
                 tG++G++G ++ ++L++  ++ + ++  l+ sp++ ++l  +++v+  + g   + dkl e  e++dvv+  
  CDO71823.1  80 TGATGYIGGSVLQRLLQHPKASTFQITTLVRSPQKAKTLnAEFGVE-AVVGSYAELDKLAELSEQADVVFSC 150
                 9***************************999988755541456666.8999999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3367.34
//
Query:       CDO71824.1  [L=841]
Description: hypothetical protein BN946_scf184939.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-151  503.9   0.0   2.7e-151  503.5   0.0    1.1  1  XFP_N         XFP N-terminal domain
    1.9e-78  262.6   0.0    3.4e-78  261.8   0.0    1.4  1  XFP_C         XFP C-terminal domain
    9.7e-77  256.6   0.0    1.4e-76  256.1   0.0    1.2  1  XFP           D-xylulose 5-phosphate/D-fructose 6-phosphate p
  ------ inclusion threshold ------
      0.014   15.2   0.1      0.041   13.7   0.1    1.7  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
       0.14   11.6   0.0       0.24   10.8   0.0    1.3  1  IcmF-related  Intracellular multiplication and human macropha


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.5   0.0  7.6e-155  2.7e-151       3     362 ..      70     428 ..      68     430 .. 0.98

  Alignments for each domain:
  == domain 1  score: 503.5 bits;  conditional E-value: 7.6e-155
       XFP_N   3 seeelkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsysely 101
                 s++el+ ++++ raa+y+a+++i+lkdn l++ +++++d+k rllGhwGt+pGl ++yah+nr+++    + lyvvGPGhG+p++++ ++legs++++y
  CDO71824.1  70 SKQELSAIKQFRRAADYIAAAMIFLKDNALVERDITADDIKPRLLGHWGTCPGLVIVYAHINRLVRMTGIDALYVVGPGHGAPGILSCLWLEGSLANFY 168
                 7899*********************************************************************************************** PP

       XFP_N 102 peiskdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPileln 200
                 p++s+d+eGl  l+k fs PGG+pshv+aetPGsiheGGelGyals+++Gav+d+Pdl+ +cvvGdGeaetGP+at+wh  k+++Pae+GavlPi+++n
  CDO71824.1 169 PKYSRDKEGLTALVKSFSSPGGFPSHVNAETPGSIHEGGELGYALSVSFGAVMDKPDLVCVCVVGDGEAETGPTATAWHGYKYIDPAESGAVLPIVHVN 267
                 *************************************************************************************************** PP

       XFP_N 201 GykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegsf 299
                 G+kis++ti++ ++d+e+ +lf+G+Gy++++ved    ++++ la+ +++a+ ei++iq +ars +  ++P+wP++ilrtPkGw+gPk + G+ +egsf
  CDO71824.1 268 GFKISERTIYGTMDDKEITALFTGYGYQARIVED--LDNIDEDLAASMEWALGEIKKIQTAARSGKPIVKPRWPVLILRTPKGWSGPKELHGEYIEGSF 364
                 ********************************98..5567889******************************************************** PP

       XFP_N 300 rahqvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkge.krlaanpeangg 362
                 rahqvPl+ a+++ +++++l+ewl+sy p+elf e+g +++ +  l+P++e krl+ ++ea+ +
  CDO71824.1 365 RAHQVPLPEAKTDANERRMLQEWLTSYGPKELFSESGVPNDAILSLIPEQEsKRLGMREEAYKA 428
                 ************************************************87648******99976 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.8   0.0   9.5e-82   3.4e-78       1     196 [.     634     833 ..     634     838 .. 0.96

  Alignments for each domain:
  == domain 1  score: 261.8 bits;  conditional E-value: 9.5e-82
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeesehphglsdeefdelFtkd 99 
                 Kqp+p++ls++eA++hc +Gas+w++astdeg  pdvvl+giG+e+t+Ev+aA++llr+++p l+vrvvnv+dLm+l + ++hph+lsde+fd+lFt+d
  CDO71824.1 634 KQPTPVWLSPEEADKHCIAGASVWKFASTDEGMAPDVVLVGIGVEMTFEVIAAAALLRKTIPALRVRVVNVTDLMILGPFGSHPHALSDEDFDSLFTRD 732
                 9************************************************************************************************** PP

       XFP_C 100 kpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidai....krveklkkkaaelaeklkekleehkkyireegeDl 194
                 kp++fn+HgYp ++k+Ll++r+n +r+ ++gY+eeGttt+pf m+++ne++R+h+a++a+      +++++ +a+++++++ + +++ k+yi+++g D+
  CDO71824.1 733 KPIVFNYHGYPVELKGLLFGRPNLSRMGIHGYMEEGTTTSPFMMMLMNETSRYHIAAEAVrsaaLLNPRVEIDAHKTISTILHLAQKDKEYIHAHGADP 831
                 ************************************************************5554447788889*************************9 PP

       XFP_C 195 pe 196
                   
  CDO71824.1 832 AG 833
                 76 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1   0.0     4e-80   1.4e-76       3     175 ..     454     622 ..     452     623 .. 0.97

  Alignments for each domain:
  == domain 1  score: 256.1 bits;  conditional E-value: 4e-80
         XFP   3 lgkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieeedeelaaeGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsmvnqh 101
                 +g++l++v+++np++frif+PDe+ Sn+L+av+ ++ r++q++i++     a+ Grvie+lsEh+c+g+l+gY+ltGr+glf+syEafl iv++m++q+
  CDO71824.1 454 TGELLDAVVQQNPSSFRIFSPDELVSNKLDAVLRHSGRNFQWDIAS----RANGGRVIEILSEHTCQGMLQGYTLTGRTGLFPSYEAFLGIVHTMMVQY 548
                 6999**************************************6654....5679********************************************* PP

         XFP 102 akflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclr 175
                 akf+k+a+e++wr+++ sln+++tst+ rq+hNgfsHq+p++i+avln k++ +rvylPpDaN++ls+++hclr
  CDO71824.1 549 AKFVKTAHEVPWRQPMGSLNYVETSTWARQEHNGFSHQNPSFIGAVLNLKPASARVYLPPDANCFLSTMAHCLR 622
                 ************************************************************************98 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.041      27      57 ..     206     236 ..     191     243 .. 0.86
   2 ?   -3.9   0.0         3   1.1e+04     110     141 ..     282     311 ..     274     318 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                   TS-TTTHHHHHHHHHHHSTTSEEEEEEEHHH CS
  TPP_enzyme_C  27 lgtmGyglpaAiGaklakpdrevvaivGDGg 57 
                    g +Gy+l+++ Ga + kpd   v++vGDG 
    CDO71824.1 206 GGELGYALSVSFGAVMDKPDLVCVCVVGDGE 236
                   4789**************************6 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
                   ---HHHHHHHTTSEEEEESSH.HHHHHHHHHH CS
  TPP_enzyme_C 110 pvdfaklaealGakgarvekadveeleealke 141
                   ++ + +l  ++G ++  ve+   + ++e l++
    CDO71824.1 282 DKEITALFTGYGYQARIVEDL--DNIDEDLAA 311
                   457788888999887665555..666666554 PP

>> IcmF-related  Intracellular multiplication and human macrophage-killing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.8e-05      0.24     199     236 ..     281     319 ..     268     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
  IcmF-related 199 te.gvpglfTrkGyeevflkaldeaaeklleeddWVlgd 236
                   ++ ++  lfT  Gy+  + + ld++ e+l+++ +W lg+
    CDO71824.1 281 DDkEITALFTGYGYQARIVEDLDNIDEDLAASMEWALGE 319
                   4449**********************************3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5923.17
//
Query:       CDO71825.1  [L=449]
Description: hypothetical protein BN946_scf184939.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-91  305.9   0.1    7.8e-91  304.7   0.1    1.6  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.7   0.1   4.3e-95   7.8e-91       2     389 ..      12     436 ..      11     437 .. 0.80

  Alignments for each domain:
  == domain 1  score: 304.7 bits;  conditional E-value: 4.3e-95
  Acetate_kinase   2 vLviNaGSsSlKfqlleae........akeevllkglveeilleeaellkkl.eg....ekkeaektaiadheealklilntlkeekvikdlkei 83 
                     +L +NaGSsSlK++l+ ++         + + ll   + +i ++ a ++ +l +     e k++  ++i+dh++a +++ln lk+ +   d +ei
      CDO71825.1  12 ILAVNAGSSSLKISLFKKDgaspesphDIVDLLLTSTITNISQPPASFSFSLaSHgqgrEAKKEPVKEIKDHASAFQHFLNYLKR-EASIDRSEI 105
                     89**************9997666544422233333444444444444333321221111345566789*****************.688899*** PP

  Acetate_kinase  84 aaighRvvhggekftesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfH 178
                       i hRvvhgg +f e+v+itde  + i++l++laplhN + l++++a+ + lp+++++a fDt+fh+t+p++ ++ya+ ++++++ g+++ygfH
      CDO71825.1 106 VHICHRVVHGGDYF-EPVIITDESYHYIERLSDLAPLHNGGALSVMKACIAELPNANSIAYFDTSFHRTMPQHIAMYAIRQDVAKKRGLKKYGFH 199
                     ***********988.79****************************************************************************** PP

  Acetate_kinase 179 gtshkyvskraakilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteg.lsad..........ev 262
                     g+s+ y+ + + + l+k+  +  liv+HlG GaS++a+knGks+dt+mgltp+ Gl   tRsG idp+++++ ++++g +s d          + 
      CDO71825.1 200 GLSYAYILRAVSSFLEKEPSQTSLIVMHLGSGASMCAIKNGKSLDTTMGLTPVSGLPGATRSGAIDPSLIFHYTNRAGrISHDrsmavdvhvtQA 294
                     ***********************************************************************987765423333222222322256 PP

  Acetate_kinase 263 entlnkksGllglsglssDlrevedaae..........e.gde..eaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlk 344
                     e++lnk+sG  +l+g ++D+ +++++++          e ++e  + + a++++  r+  y+g+y ++l g+vDa+vF gGige + + re v++
      CDO71825.1 295 EEILNKRSGWAALTG-TTDFGTIVKEMKavearraageEvNEEegKWKIAFDLFLDRIVGYLGAYYVKLGGEVDALVFAGGIGEKSVELREAVVE 388
                     899************.8898888776652222222111222221134689********************************************* PP

  Acetate_kinase 345 alevlglevdkeknknrsGede.li..steqskvkvivvptnEelaia 389
                      +++lg+++d++ n++++ +d+ ++   + +   +v+v +t+E+l +a
      CDO71825.1 389 SVRCLGFALDEKANQEVDSRDGaVVdvGKLKELRRVLVCRTDEQLEMA 436
                     **********99997555555413311344455578999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2969.63
//
Query:       CDO71826.1  [L=264]
Description: hypothetical protein BN946_scf184939.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-14   54.1   0.4    5.1e-14   52.5   0.2    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
    4.2e-10   40.6   1.5    1.4e-09   38.9   1.5    1.7  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.8e-09   37.2   0.0    4.3e-09   36.0   0.0    1.6  2  Hydrolase_4    Serine aminopeptidase, S33
     0.0085   15.9   0.0       0.55   10.0   0.0    2.8  3  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.2   1.1e-17   5.1e-14       1     109 [.      21     125 ..      21     142 .. 0.93
   2 ?   -1.1   0.0      0.26   1.1e+03     227     254 ..     214     241 ..     199     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.1e-17
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.G CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.p 95 
                    p++v+lhGl++++  w +++  p+L +  f+++ +D+rG+g S ++ ++  +dy+ + +a+ +++++d +g++k+   G+S+GG ++    a y p
     CDO71826.1  21 PAIVFLHGLANCAAAWDGHFADPYLFQ-NFFLVRYDMRGHGMSGKPFEP--EDYESIRFAEGFKAVCDGYGLKKPFFAGWSLGGSVVVDIVAAYgP 113
                    79***********************99.********************9..*************************************99999999 PP

                    GGEEEEEEESECSS CS
  Abhydrolase_1  96 erVkalvllgaidp 109
                    + ++++ ++g+  p
     CDO71826.1 114 SCIAGVLCIGG--P 125
                    99999999998..3 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.26
                    HHHHHHHHHCHTSEEEEEEETCSSSHHH CS
  Abhydrolase_1 227 pkaledlaqllpkkrlvvisdagHlafl 254
                    p++l++ +++ ++++++ +++ gH   l
     CDO71826.1 214 PNMLRFVKEHYKDVEVKMLPGVGHSPAL 241
                    5667777777777777777777776665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   1.5   3.1e-13   1.4e-09       1     212 [.      23     242 ..      23     247 .. 0.51

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 3.1e-13
                    EEEE--GC.....G.CHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH..HHHHCCTT.......TTSEEEEEETCHHHHHHH.HHHCC CS
  Abhydrolase_6   1 vlllHGagssassW.lvapL.aallaagvhvlapDlpGhGrsdpppldledladl..aalldelaa.....gggpvvlvGHSlGGalala.aapla 86 
                    +++lHG+   a +W    ++  ++l + +  + +D +GhG  +++p++    +d+   +++++++a     g ++++  G+SlGG+++   +a++ 
     CDO71826.1  23 IVFLHGLANCAAAWdG--HFaDPYLFQNFFLVRYDMRGHG-MSGKPFEP---EDYesIRFAEGFKAvcdgyGLKKPFFAGWSLGGSVVVDiVAAYG 112
                    8*****9999999*51..553555556677799******8.55555555...33333344444444444457**************8888544444 PP

                    ....EEEEES-...----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCC.HHHC..CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE CS
  Abhydrolase_6  87 ..lvvgvlldppp.talpagllaaalelllallallrllawlsreplprlfla.deda..daawrarlarlaallaglgllpaaawadlpvpllvl 176
                       ++gvl  + p ++l   +++ a ++l+  + +++++a ++   ++  f++ ++++    ++   l  l a+ a++ + ++ ++ ++ ++    
     CDO71826.1 113 psCIAGVLCIGGPvLSLTKYFPQCANPFLEITILSEPTDAIDVSI-AANAFVDsCVAPnyPLSYSLKLKMLGAFVAQPRTVRVNHICRTQPSE-F- 205
                    777788666663322222222444444444445555556666321.11233331111011122222222222333333333444444444444.3. PP

                    CTT-C.....HHHHCHHCCCHSTTEEETCE...SSS-HHHH CS
  Abhydrolase_6 177 ggeDp.....lvprllerllaqagarlpvvlpgaGHlphle 212
                    +++ +     +++  + + +   ++++ + lpg GH+p le
     CDO71826.1 206 CEQHArdvpnMLR--FVKEHY-KDVEV-KMLPGVGHSPALE 242
                    4443353232222..223333.56666.7888888888774 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   9.7e-13   4.3e-09       2     124 ..      18     142 ..      17     182 .. 0.83
   2 ?   -1.7   0.0      0.32   1.4e+03     219     236 ..     224     241 ..     204     243 .. 0.64

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 9.7e-13
  Hydrolase_4   2 epkavvvlvHGlaehsgryae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllryp 98 
                  + k ++v++HGla+ + + +  +a+    q+f  + +D rGhG s gk  + ++++++   +a+ +++v++ ++ ++ f  G S+GG +++ +++ y 
   CDO71826.1  18 PTKPAIVFLHGLANCAAAWDGhFADPYLFQNFFLVRYDMRGHGMS-GKPFEPEDYESIR--FAEGFKAVCDGYGLKKPFFAGWSLGGSVVVDIVAAYG 112
                  56889**********9999855***********************.9999888888775..666679999999999******************9998 PP

  Hydrolase_4  99 dkvaglils..aPalkikakl.k.appllk 124
                  +++ + +l+  +P+l++ +++ + a+p+l+
   CDO71826.1 113 PSCIAGVLCigGPVLSLTKYFpQcANPFLE 142
                  866544443347999998886334555544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.32
  Hydrolase_4 219 skdktlklypglyHelln 236
                   kd+++k+ pg  H+   
   CDO71826.1 224 YKDVEVKMLPGVGHSPAL 241
                  247777777777777655 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00012      0.55       6      43 ..      12      49 ..       8      54 .. 0.82
   2 ?    1.2   0.1     0.061   2.7e+02     108     149 ..      93     136 ..      83     149 .. 0.76
   3 ?    0.6   0.0     0.094   4.2e+02     181     216 ..     219     254 ..     212     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
                   EE--SS---EEEEEE--TT--SHHHHHHHH.TT--TTE CS
  Abhydrolase_2  6 vvspkdkaqavviflHGlGdsghawaeaakteaalpni 43
                    +s++d+ +++++flHGl   + aw   +++ + ++n+
     CDO71826.1 12 TESAGDPTKPAIVFLHGLANCAAAWDGHFADPYLFQNF 49
                   57899*************99999998777777666665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.061
                    EEEEETHHHHHHHHHHHT-.SS--SEEEEES---T.TGGGTTTT CS
  Abhydrolase_2 108 iigGFSqGaalalylaltl.pkklggivafsgalp.lsqkless 149
                    ++ G S G+ +++  + ++ p  ++g++ ++g ++ l + +++ 
     CDO71826.1  93 FFAGWSLGGSVVVDIVAAYgPSCIAGVLCIGGPVLsLTKYFPQC 136
                    789**********998887366999**99999655044556664 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.094
                    HHHTTS-GEEEEEETT--SS--HHHHHHHHHHHHHH CS
  Abhydrolase_2 181 vlkkllkkvelksyeglaHsideeemqdikeflkkl 216
                    + k+  k+ve k ++g++Hs   e +++ k +++ +
     CDO71826.1 219 FVKEHYKDVEVKMLPGVGHSPALERVAETKLYIREW 254
                    67788899************9999988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1813.43
//
Query:       CDO71827.1  [L=544]
Description: hypothetical protein BN946_scf184939.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.6e-158  526.9   1.2   5.2e-158  526.7   1.2    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  526.7   1.2  2.9e-162  5.2e-158       1     490 [.      47     540 ..      47     541 .. 0.98

  Alignments for each domain:
  == domain 1  score: 526.7 bits;  conditional E-value: 2.9e-162
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a+i++t+lGP+G+dK+l+++ g+++vTnDGatil+++e++h +akllv++++sqd+e+GDGTt vv+Lag+Lle++e+l+++g+hp++i +g+e+a++
  CDO71827.1  47 VANIIRTSLGPRGLDKILISPDGEITVTNDGATILSQMEVDHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQSEELLDRGIHPVRIADGFERACA 145
                 689************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS.EECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSC CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene.keldlgrikvvkieggsledselveGlvldkgvlspdmpk 197
                  a+e+L++i+ +++ +++d+++Llk a tsl+sk++ske +++++++v+Av+++ + + k++ +++ikv  + ggsl d++l++G+++dk++++p+mp 
  CDO71827.1 146 VAIEQLDRISDRVPFSKEDTSNLLKTALTSLGSKIVSKEHNQFAEIAVEAVMAVADLDrKDVPFDMIKVDGKVGGSLADTQLIRGVLIDKDMSHPQMPS 244
                 ***************************************************77776667**************************************** PP

                 EEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT-- CS
  Cpn60_TCP1 198 klenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGat 296
                  +++ak+++l++++e+++++tk++++++++ee+ kl++ e++++e+++++++++g+n+v+cq+g+dd+a+h+l++n++ a+r+v   ++e +a+at+++
  CDO71827.1 245 VVRDAKLAILTCPFEPPRPKTKHKLDITSVEEYRKLRDYEKEKFEDMIKRVKDTGANLVICQWGFDDEANHLLMQNELPAVRWVGGPEIELIAIATNGR 343
                 *************************************************************************************************** PP

                 EBSCGGGGGCGC-EEEEEEEECCETT..CCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCT CS
  Cpn60_TCP1 297 avssledltpeelGtakkveeekigs..ekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaks 393
                 +v ++edl+p +lG+a+ v+e ++g+  +k+++iee+++++++t+ +rg++++++de++ra++dA+++v+n++ d++vv+GGGa+ ++++ ++++ a++
  CDO71827.1 344 IVPRFEDLSPAKLGQAGLVREVTFGTtrDKMLVIEECANARTVTVFVRGSNKMIVDEAKRALHDAICAVRNLVVDNRVVYGGGAADISCSLAVSKAADE 442
                 ************************98789********************************************************************** PP

                 SXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH.HTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXXX CS
  Cpn60_TCP1 394 vsgeeqlaieafakALevipktLaeNaGldpievlaklraah.nkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiikak 490
                 +++ eq+a++afa+AL ++p +LaeN+Gl+pie+la+++++h ++g  +lgid+ s+   d+++++v+Dpl  krq + +At++++ iL+id++i a+
  CDO71827.1 443 IPTIEQYAMRAFASALDAVPLALAENSGLSPIETLAEVKSRHvKEGISTLGIDCLSKGDNDMKKQNVYDPLISKRQQYLLATQLVRAILKIDDVITAG 540
                 ******************************************777779***********************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3943.01
//
Query:       CDO71828.1  [L=241]
Description: hypothetical protein BN946_scf184939.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-49  166.7   0.3    3.1e-49  166.2   0.3    1.2  1  Fra10Ac1        Folate-sensitive fragile site protein Fra10Ac
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.24   11.0   0.0    1.4  1  Glyco_hydro_11  Glycosyl hydrolases family 11
       0.21   11.4   1.5       0.47   10.3   1.5    1.5  1  zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
        3.2    7.4   6.4        2.3    7.9   4.0    2.1  2  FAM176          FAM176 family


Domain annotation for each model (and alignments):
>> Fra10Ac1  Folate-sensitive fragile site protein Fra10Ac1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.3   6.9e-53   3.1e-49       1     125 []      17     146 ..      17     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 6.9e-53
    Fra10Ac1   1 tdldvlkenhrFlrddddeeeekesweerlakkyydkLfkeyaladlsrykegkialRWrtekevvsGkGqftCgnlkCkekeak.....akeveLksy 94 
                 +++d+lk++h+Flrddd+ +e++ sw+erlakkyy++L++eya++dl++yk+g++alRWrte+ev+sG G+++Cgn++C  +++      + + +L+++
  CDO71828.1  17 SEFDILKSSHKFLRDDDEVDERQLSWDERLAKKYYSSLYREYAVCDLKHYKSGNFALRWRTEEEVLSGAGETSCGNTRCPLHKEIldqdvDIRPALTTL 115
                 589****************************************************************************988863555558899***** PP

    Fra10Ac1  95 evnFaYvekgekkealvkvrlCeecakklny 125
                 ev+F+Y+e+ge+k alvk++lC++c kkl+y
  CDO71828.1 116 EVPFSYIEQGESKFALVKLVLCPKCVKKLMY 146
                 *****************************98 PP

>> Glyco_hydro_11  Glycosyl hydrolases family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.4e-05      0.24       2      44 ..      48      89 ..      47     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.4e-05
                    ---EEEEEECCCSEEEEEC-TTTEEEEEEECSSEEEEEEEESS CS
  Glyco_hydro_11  2 ngyyyslwkdgggsvtytngaggsysvswsnagnfvvgkGwnp 44
                    ++yy sl+++  +  +++++++g+++++w+++++++ g G + 
      CDO71828.1 48 KKYYSSLYREY-AVCDLKHYKSGNFALRWRTEEEVLSGAGETS 89
                    57899999999.999*************************543 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5    0.0001      0.47       3      19 ..     136     152 ..     135     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0001
                     E-SSS--EEEEEE-SSS CS
  zf-C4_Topoisom   3 kCPkCggdLvlkrgkkG 19 
                      CPkC ++L++kr k +
      CDO71828.1 136 LCPKCVKKLMYKRNKEK 152
                     6***********99875 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.61   2.7e+03      73      90 ..      31      48 ..      16      73 .. 0.62
   2 ?    7.9   4.0   0.00051       2.3      37      87 ..     130     184 ..     128     238 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.61
      FAM176 73 deeeeeeeedsseseaee 90
                d++e +e++ s +++  +
  CDO71828.1 31 DDDEVDERQLSWDERLAK 48
                455555555555544443 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00051
      FAM176  37 tLcllviriscrkdlerlkkkkkklkeeseka...seded.eeeeeeeedssese 87 
                 +L+ lv+   c k+l  +++k+k++++e e+    s+  d ++ ++ e+++ +++
  CDO71828.1 130 ALVKLVLCPKCVKKLMYKRNKEKERAREREEGssrSNRRDvDDGDDGEHQQRKRH 184
                 7888999999999988444333333333333223433333122222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1853.10
//
Query:       CDO71829.1  [L=370]
Description: hypothetical protein BN946_scf184939.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-48  164.9   0.0    3.5e-48  164.5   0.0    1.1  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.0     2e-52   3.5e-48      40     252 ..      39     273 ..      34     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 2e-52
  Methyltransf_28  40 lrkflpefyea.leyhlvEaSpqlrerQknrLkekakevkkestvkslgvkveWleelkeip...eetgfilanEffDaLPihqfertedgwre 129
                      + +f p+  +a +e+hlvE+Sp++r +Q+++L+  a         ++ g  ++W++ l++++    + +++la+EffDaLP h +++t +gw+e
       CDO71829.1  39 FSQF-PAARSAtKEIHLVETSPTMRTAQEAKLSPLA---------QQQGWTLHWHDGLDQVQpdsTKYTLVLAHEFFDALPFHLLQKTHHGWQE 122
                      6667.6665555*********************964.........66677789********6699999************************** PP

  Methyltransf_28 130 llveltpe.....................kkakek......efrltlspsetdplsevlpklskrlkaleegsrieispeaeallediaerlak 196
                      +l+   p                      +    +      +fr +lsps+t p+s++l   s r+++l+ gsrie+sp+++ ++++++e+l  
       CDO71829.1 123 VLIASGPDpaaatvlnscsnnptldfsssN----PpanaslRFRQVLSPSPT-PSSTLLGLSSARFQKLPVGSRIEVSPASFRIARRLGEILYD 211
                      ******9999*****999999999875442....235666789999******.89999999*******************************99 PP

  Methyltransf_28 197 .......egGaaLiiDYgesssepngtLrairkhklvdpleepGevDltadvDFtalaeaaee 252
                             + G aLi+DYg  ++++++++ra+++hk+vdp++ pGe+Dlt++vDF  l+ a  +
       CDO71829.1 212 qesqaarSAGSALIVDYGG-EKVYGNSFRAFKDHKIVDPFYLPGECDLTVNVDFAYLKDASAD 273
                      99****99**********9.589***********************************99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2906.82
//
Query:       CDO71830.1  [L=245]
Description: hypothetical protein BN946_scf184939.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-83  277.6   0.1    5.7e-83  277.2   0.1    1.2  1  eIF-6     eIF-6 family


Domain annotation for each model (and alignments):
>> eIF-6  eIF-6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.2   0.1   3.2e-87   5.7e-83       1     197 []       4     204 ..       4     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 277.2 bits;  conditional E-value: 3.2e-87
                 .E-BTTB--HHHH-EE-SSEEEE-TTS-HHHHHHHHHHHT..-EEEE--BTTBS-HHHH-EE-SSEEEEETT--HHHHHHHHHHHH---..EEE--SS- CS
       eIF-6   1 rlsiegsseiGvfarltnkyalvpegveeefvkaieeeLk..vevvettiagsrlvGslvvgNsngllvpstvtdeeleklkeslklev..erleeklt 95 
                 r+++e+ss+iGvf++ltn+y+l + + +++f++a+e+eL+  +++v+t+i+g+r+vG+l++gN++gllvpst+td+el++l++sl+++v  +r+ee+l+
  CDO71830.1   4 RIQFENSSDIGVFSKLTNSYCLCAIQGSTNFYSAFESELGdvIPIVHTSIGGTRIVGRLTAGNRHGLLVPSTTTDQELQHLRNSLPDPVaiQRVEERLS 102
                 79************************9999***********99*******************************************77777******** PP

                 -HHHHEEE-SSEEEE-GGGGG.GHHHHHHHHTSEEEE--BTTBS-TTTSEEE-SSEEEE-TT--HHHHHHHHHHHT-SEEE--BTTTBS-GGGTEEE-S CS
       eIF-6  96 AlGNvilaNDkvAlvhpdlsketveiiadvLgvevvrgtiagiktvGsaavvtnkgllvhpkateeeleeleellkveveagTvNrGsklvgsglvaNd 194
                 AlGNvi++ND+vAlvhpd+++et+eiiadvL+vev+r+tia++ +vGs+av+tn+g++vhpk++ ++++el++ll+v++ agTvNrGs+++g+glv+Nd
  CDO71830.1 103 ALGNVIACNDYVALVHPDIDRETEEIIADVLKVEVFRQTIADNVLVGSYAVITNQGGIVHPKTSIQDQDELSSLLQVPLVAGTVNRGSDVLGAGLVVND 201
                 *************************************************************************************************** PP

                 S-E CS
       eIF-6 195 kga 197
                 ++a
  CDO71830.1 202 WCA 204
                 *85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2065.17
//
Query:       CDO71831.1  [L=1094]
Description: hypothetical protein BN946_scf184939.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.3e-111  366.9   0.0    1.4e-47  161.7   0.0    3.7  3  PTPlike_phytase  Inositol hexakisphosphate
    0.00059   19.6   0.0      0.083   12.7   0.0    3.0  2  DSPc             Dual specificity phosphatase, catalytic doma
     0.0061   16.6   1.8        1.5    8.7   0.0    2.5  2  Translin         Translin family
  ------ inclusion threshold ------
      0.015   14.9   0.0       0.67    9.5   0.0    2.3  2  Y_phosphatase    Protein-tyrosine phosphatase
      0.028   14.1   0.0      0.076   12.7   0.0    1.7  1  CDKN3            Cyclin-dependent kinase inhibitor 3 (CDKN3)


Domain annotation for each model (and alignments):
>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   2.2e-18   7.7e-15      75     142 ..      15      88 ..       2      89 .. 0.87
   2 !  145.5   0.0   3.9e-46   1.4e-42       1     156 []     380     539 ..     380     539 .. 0.95
   3 !  161.7   0.0   3.9e-51   1.4e-47       2     155 ..     825     985 ..     824     986 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 2.2e-18
                      -.................EE-HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS.-TT-EEEEE-SSSS CS
  PTPlike_phytase  75 tlqevweeve.....tpeevyerelaeelslrYaRipitdekapeeedfdalvsilkea.pektalvfnCqmGr 142
                       + + w  v+     t++e++e++++++++++Y+Ripi+ ++ +e++++da+v+++ke+ p +talvfnC mG 
       CDO71831.1  15 AILPTWTAVDsgnvrTQRELMENMRKDGWNVEYHRIPISPDRPIEDNYLDAYVRVIKETdPLSTALVFNCGMGA 88 
                      5556666666777789*******************************************999***********6 PP

  == domain 2  score: 145.5 bits;  conditional E-value: 3.9e-46
                      EEEE-S-EEEETTEEEEEE-GGG-TTTT--.HHHHHHHHHHHHHHHHT-SEEEEEEEHHHHHTT-CCG-EEE-S-..................E CS
  PTPlike_phytase   1 inlReEpvvyvngrpyvlrekedllenlkeytgisaeeleklearlkeevlaeakksegrvlvhdeteegkdvktlqevweeve......tpee 88 
                      i+lReEp+vyvng py+lr+++ +l+n+k+y gisa +le le+rlke+v++e++ ++gr+l+h+et +g    +++++weev+       +e+
       CDO71831.1 380 ICLREEPIVYVNGAPYCLRRERFSLRNMKDYGGISATRLEMLEERLKEDVVNEVNAFGGRLLLHTETPDG----SVVPIWEEVDpenvmvLKEV 469
                      79********************************************************************....89*************75555 PP

                      E-H.HHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS.-TT-EEEEE-SSSSHHHHHHHHHHHHHH CS
  PTPlike_phytase  89 vye.relaeelslrYaRipitdekapeeedfdalvsilkea.pektalvfnCqmGrgRTTtamviatLll 156
                      + e r+++++++l+YaRipit+e+ p+ +d+++l++++ +   ++ ++++nCq GrgR+T++ vi+ L++
       CDO71831.1 470 MAErRHVDDGVELSYARIPITAERPPDFTDLSELIEVMIRCnTSEVPIIINCQLGRGRSTLTAVILLLIK 539
                      555699***********************************78899********************9985 PP

  == domain 3  score: 161.7 bits;  conditional E-value: 3.9e-51
                      EEE-S-EEEETTEEEEEE-GGG-TTTT--.HHHHHHHHHHHHHHHHT-SEEEEEEEHHHHHTT-CCG-EEE-S-.................EE- CS
  PTPlike_phytase   2 nlReEpvvyvngrpyvlrekedllenlkeytgisaeeleklearlkeevlaeakksegrvlvhdeteegkdvktlqevweeve.....tpeevy 90 
                      +lReEpv+y+ grp+vlr  +++len+ e+tg+++  +e++e++lk++vl+e+++++gr+l+hde+ee+  v +++++we+ve     tp++vy
       CDO71831.1 825 SLREEPVIYIAGRPHVLRLLDKPLENV-EATGVTTAVVEAMEESLKRDVLREVREGQGRILLHDEVEERPGVFSIIPIWEDVEekdimTPRDVY 917
                      79************************7.****************************************************************** PP

                      HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS.-T..T-EEEEE-SSSSHHHHHHHHHHHHH CS
  PTPlike_phytase  91 erelaeelslrYaRipitdekapeeedfdalvsilkea.pe..ktalvfnCqmGrgRTTtamviatLl 155
                      e +++e+++++Y R+++tde+ap++  +++l+  +++  ++  +  +vfnCqmGrgRTTt+mv a+L+
       CDO71831.1 918 ELMVKEGYKVDYDRVAVTDEQAPLPGALSQLLMRVRTGlQSgqTVDFVFNCQMGRGRTTTGMVTACLI 985
                      *************************************966688889*********************8 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.3e-05     0.083      26      92 ..     470     533 ..     457     545 .. 0.75
   2 ?    3.2   0.0      0.02        72      44      97 ..     931     986 ..     906    1005 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                 SSSSSECECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHH CS
        DSPc  26 tkevpnanalkkseieklripvedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatlii 92 
                 + e+++   +   e  + rip+  e+  ++  +l+e++e+   + +++  ++++Cq G  RS   ++
  CDO71831.1 470 MAERRH--VDDGVELSYARIPITAERPPDF-TDLSELIEVMIRCNTSEVPIIINCQLGRGRSTLTAV 533
                 444443..5567778888888888555554.58999999999********************76544 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
                 EECCESSTTSCCGGGHHHHHHHHHHHHHTT-EE..EEEESSSSSHHHH.HHHHHHHH CS
        DSPc  44 ripvedehetkiskyleeavefidkakqkgkkv..lVHCqaGisRSat.liiaYlmk 97 
                 r+ v d +++ +   l+++ + +++  q+g++v  + +Cq+G  R+ t +++a l+ 
  CDO71831.1 931 RVAVTD-EQAPLPGALSQLLMRVRTGLQSGQTVdfVFNCQMGRGRTTTgMVTACLIA 986
                 555555.6677777888888888888888888865679*******977455555554 PP

>> Translin  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00043       1.5      58      95 ..     227     264 ..     195     289 .. 0.80
   2 !    6.3   0.5    0.0023       8.4      15     112 ..     579     682 ..     572     696 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00043
                 .........GHHHHGGGTH.HHHHHHHHHHHHHHHHHS CS
    Translin  58 svaeelqgsnayrYqrqisgglqeliealsfahYletq 95 
                 s++  +++ ++ +Y ++  ++l+++ +a++fa+Y+e q
  CDO71831.1 227 SLTTAVDDREREKYLNKAVKSLEKYFFAIAFANYIELQ 264
                 4555666669999**********************944 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHTTGSST.TTHHHHHHH.H..HHHHHHHHHHTTSS..........GHHHHGGGTH.HHHHHHHHHHHHHHHH...HSS---HHHHHHHT CS
    Translin  15 aaskkiifllhrvrsek.teaqdkkakik..keakeklkeiakllasvaeelqgsnayrYqrqisgglqeliealsfahYle...tqtLitleevqkil 107
                 ++s +ii  l rv  +    +q  + +i+  +e+ +  + i++  ++ ++  ++ ++   ++   + l ++ e++ f+ Yl+    +t+ t+e +++ +
  CDO71831.1 579 RHSYQIINNLLRVIRKGpMVKQAVDDAIDqcSEVFNLREAIEEARSRAEQATDERQRRLHAHRGLQNLRRYFELIIFQAYLQstePDTMQTHESFESFV 677
                 5677777777777655533333333333333344433344444433333333333333355555668999************55445699999888888 PP

                 T.--- CS
    Translin 108 ealke 112
                 +  ++
  CDO71831.1 678 KDRPV 682
                 76555 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00019      0.67     155     197 ..     500     541 ..     487     553 .. 0.74
   2 ?    2.7   0.0     0.023        81     167     197 ..     958     988 ..     935    1000 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
                    HHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHH CS
  Y_phosphatase 155 llklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqql 197
                    l +li+ + + + +++ p+++ C  G gR+   +++ +l+++ 
     CDO71831.1 500 LSELIEVMIRCN-TSEVPIIINCQLGRGRSTLTAVILLLIKRW 541
                    444444444444.456***************999999999876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.023
                    STTSS-EEEECSSSSHHHHHHHHHHHHHHHH CS
  Y_phosphatase 167 eaksgpvvVhCsaGvgRtgtfvaldillqql 197
                    + ++   v  C  G gRt t ++  +l+   
     CDO71831.1 958 SGQTVDFVFNCQMGRGRTTTGMVTACLIATT 988
                    345778899***********99998887665 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05     0.076     106     156 ..     487     537 ..     479     545 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
                 ----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHH CS
       CDKN3 106 hpiadggtpdiascleimeelatclknyrktlihcygglgrsclvaaclll 156
                  pi+    pd +   e++e +  c   +   +i c  g grs l a  lll
  CDO71831.1 487 IPITAERPPDFTDLSELIEVMIRCNTSEVPIIINCQLGRGRSTLTAVILLL 537
                 58888999************************************8888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 7285.26
//
Query:       CDO71832.1  [L=381]
Description: hypothetical protein BN946_scf184939.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   12.8   0.0       0.14   11.9   0.0    1.4  1  Mid2      Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     8e-06      0.14      20      74 ..     141     196 ..     118     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8e-06
        Mid2  20 ttvtytptataessnk.skssGLskknrniviGcvvGigvPlllvillllyifCik 74 
                  t +++++a+a +++k s+ssG     +  +iG  v  gv l+ +i+++++ f  k
  CDO71832.1 141 NTGSASSSASAGADQKgSSSSGSQGISKSTIIGLSVAGGVALIGIITFVVWKFTRK 196
                 45556666777777777788888888999**********************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2636.64
//
Query:       CDO71833.1  [L=265]
Description: hypothetical protein BN946_scf184939.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1892.08
//
Query:       CDO71834.1  [L=346]
Description: hypothetical protein BN946_scf184939.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2298.20
//
Query:       CDO71835.1  [L=405]
Description: hypothetical protein BN946_scf184939.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-43  147.6   1.7    5.8e-43  147.3   1.7    1.1  1  DUF647    Vitamin B6 photo-protection and homoeostasis


Domain annotation for each model (and alignments):
>> DUF647  Vitamin B6 photo-protection and homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   1.7   3.2e-47   5.8e-43      14     238 ..       1     227 [.       1     230 [. 0.97

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 3.2e-47
      DUF647  14 vfLPagYPdsVtedYleYqiydslqafassiasvlatqavLegvGVGdasasptaAlllwvlkDglgrlatilfasrlgtaldsecKryrlvadvlndl 112
                 +fLP++YP+sV ++Y+++ + ++++ +  +++svl++qa+L++vGV+++ +   a +++w++kDg+g++a+++f ++++  +ds++K + l+++vl  l
  CDO71835.1   1 MFLPTNYPHSVHRSYMPFHVIQFFETVLATVTSVLCNQALLTSVGVSAEGSIFGAVAVQWIIKDGAGEVAKLFFIRHFSPYFDSHPKAFTLFGEVLGCL 99 
                 6************************************************************************************************** PP

      DUF647 113 amllellspal...pslfllvlslasvlkslcgvaagatkaslsahfArkgnlgevnAKdssqetvvsllGlllgivvvslisskaaltwlllilllal 208
                 ++ l +++ ++   p+ fl++++ ++++k ++  +   t   + + f+++gn g+v+AKd+sq  +++l+G + gi +++  ++     ++++++ + l
  CDO71835.1 100 GSGLQIATLLIapsPANFLICAAGGNIFKLVGNAIWFTTHIKFVRYFSEQGNTGDVAAKDESQASIAQLFGYASGISLLTFSHTAGY-LYSIFFIAVPL 197
                 ********999877799***********************************************************99999888888.8********** PP

      DUF647 209 hllanykavravklrtLNrqRanivlsefl 238
                 hl+++   +r+ ++++L   R++++++e++
  CDO71835.1 198 HLAMTTYMMRVATFEVLTLPRMSVLAQEYV 227
                 ****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2811.94
//
Query:       CDO71836.1  [L=3942]
Description: hypothetical protein BN946_scf184939.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.9e-150  499.0   0.0     1e-149  498.3   0.0    1.4  1  DUF1729          Domain of unknown function (DUF1729)
    7.5e-76  254.3   0.3    1.9e-75  253.0   0.3    1.8  1  FAS_I_H          Fatty acid synthase type I helical domain
    7.2e-73  245.9   1.8    2.2e-71  241.0   0.0    3.7  5  Acyl_transf_1    Acyl transferase domain
    1.7e-72  243.0   0.0    3.4e-72  242.1   0.0    1.6  1  Fas_alpha_ACP    Fatty acid synthase subunit alpha Acyl carri
    2.2e-47  160.6   0.0    4.7e-47  159.5   0.0    1.6  1  FAS_meander      Fatty acid synthase meander beta sheet domai
    2.4e-36  125.7   0.1    1.6e-35  123.0   0.0    2.1  2  SAT              Starter unit:ACP transacylase in aflatoxin b
      2e-28   98.4   0.2    9.9e-28   96.2   0.0    2.3  2  MaoC_dehydratas  MaoC like domain
    1.4e-26   93.6   0.3    3.1e-26   92.5   0.3    1.6  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.2e-25   89.2   1.7    4.6e-25   88.1   1.7    1.6  1  FAS_N            N-terminal domain in fatty acid synthase sub
    2.5e-15   56.5   0.0    6.5e-15   55.2   0.0    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      3e-14   53.1   0.0    7.8e-14   51.8   0.0    1.8  1  ACPS             4'-phosphopantetheinyl transferase superfami
    1.3e-12   47.9   0.0    6.7e-12   45.7   0.0    2.2  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
    2.2e-07   30.5   0.0    6.1e-05   22.6   0.0    2.5  2  adh_short        short chain dehydrogenase
    0.00028   20.5   0.0     0.0038   16.8   0.0    2.4  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.051   13.5   0.1       0.34   10.8   0.0    2.4  2  KR               KR domain
      0.087   12.2   0.0       0.25   10.7   0.0    1.7  1  Thiolase_N       Thiolase, N-terminal domain
        0.6   10.6   3.1        2.1    8.9   2.0    2.4  2  DUF3597          Domain of unknown function (DUF3597)


Domain annotation for each model (and alignments):
>> DUF1729  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.3   0.0  9.5e-153    1e-149       1     353 []     735    1089 ..     735    1089 .. 0.98

  Alignments for each domain:
  == domain 1  score: 498.3 bits;  conditional E-value: 9.5e-153
     DUF1729    1 piilqwtggraGGHHSledleaplletYakiRkqkNvvlvvGsGlgdaedsieyltGeWsk.elglppmPvdgillgsavmvakEaktseevkqliv 96  
                  p+i+qwtggraGGHHS+ed+ +p+l+tY+ iR+ +N++lv+GsG+g a+d+++yltG+Ws+ ++gl pmP+dg+l++s+vmvakEa+ts++vk liv
  CDO71836.1  735 PVIMQWTGGRAGGHHSCEDFPQPILATYGAIRQLSNLILVGGSGFGGADDVWPYLTGDWSVeKFGLQPMPFDGFLFASRVMVAKEAHTSSSVKDLIV 831 
                  79**********************************************************637********************************** PP

     DUF1729   97 etpGvkdeeWeatykkpaGgvvsvrSelgepihkianraaklwkeldetifsleavekrkaalekkrdeiierlnkdyakpwfavdeegelve.lee 192 
                  ++ Gv+d++We ty+k++Gg+++vrSelgepihkia+r++klwke+d+t+f+l ++ekr a+l ++r+eii++ln+d+ kpwf+ +++g+ ve +++
  CDO71836.1  832 AASGVDDSQWEGTYTKETGGILTVRSELGEPIHKIATRGVKLWKEFDDTVFNL-PKEKRAAWLAERRAEIIAKLNSDFSKPWFGWKKDGSVVEdIAD 927 
                  *****************************************************.************************************7666*** PP

     DUF1729  193 mtYsevvrRlveLaflksrkewidpswkklfqdllqrveeRl.taeehgeaesllesvealedPaeavetllaaypsaeaqlltaeDvawflqlvqr 288 
                  mtY+ev+ R++ L+++ ++++wid s+++l+ d+l+rveeR+  ++  g+++s l+s+++l++P+++ve+++++yp+a++qll+ eD a+fl++ qr
  CDO71836.1  928 MTYEEVTLRMIRLMYVAHQERWIDISLRNLTGDWLRRVEERFaGVNGGGQKASILQSYSVLDKPQAFVEEFFKKYPAATEQLLASEDKAYFLAISQR 1024
                  ******************************************77888899*********************************************** PP

     DUF1729  289 rgiKPvpFvPvldedfeaffkkdslwqsedldavvdqdaqrviilqgpvavryitkvdepvkeil 353 
                  +g+KP+pF+Pvld++fe +fkkdslw +ed+dav+dqd+qrv+ilqgpva++++   dep+k++l
  CDO71836.1 1025 PGQKPAPFIPVLDANFEVWFKKDSLWAAEDIDAVFDQDPQRVCILQGPVAAKHSIIKDEPIKDLL 1089
                  ***************************************************************97 PP

>> FAS_I_H  Fatty acid synthase type I helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.3   1.8e-78   1.9e-75       1     202 [.    2401    2602 ..    2401    2603 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 1.8e-78
     FAS_I_H    1 tkkqnelvrqqlevlaryLgvdseasereaaessaevaelqaeLdlweaEhgdeylkgikpiFdakKaRrydSaWNwarqdilklyydllqgrlkdv 97  
                  +++q++l+ qq+ev+ ryL+ ds+a+e + ++++a+ ++lqa+Ld++ +Ehgd+y++gi+p+Fd++KaR++dS+WNw+rqd+l ++yd+++grl++v
  CDO71836.1 2401 QAEQEQLAAQQIEVWMRYLKKDSRAGEIKYDAEKANSQQLQARLDAIAKEHGDTYIEGIQPVFDPLKARHFDSSWNWVRQDALLMFYDIIFGRLTTV 2497
                  689********************************************************************************************** PP

     FAS_I_H   98 dreiksrlqrilnRadenlvdlvqyllkkakassgekyaaakelgekllknarsalsaapvyvelseptaPrttidekGnieYeEvpragvqeledy 194 
                  drei++r+  i+nRad++lv+++qy++++++ ++ge+y++ak++g++l++n+++ +s++pvy++++ ptaP+t+++++G i Y Ev r++v++le+y
  CDO71836.1 2498 DREITARCIAIMNRADPELVTYMQYYIDQCDPNRGETYRLAKQFGQQLIDNCKEVVSQPPVYKDVTFPTAPHTEVTADGDIIYREVVRENVRKLEAY 2594
                  ************************************************************************************************* PP

     FAS_I_H  195 veelksGs 202 
                  vee++sG+
  CDO71836.1 2595 VEEMASGD 2602
                  ******97 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.3       8.8   9.3e+03      89     105 ..     285     301 ..     284     309 .. 0.82
   2 ?    0.9   0.0      0.25   2.7e+02     135     176 ..     367     408 ..     355     415 .. 0.85
   3 !  241.0   0.0   2.1e-74   2.2e-71       1     315 [.    1686    2060 ..    1686    2063 .. 0.94
   4 ?   -1.8   0.0       1.6   1.7e+03     242     286 ..    2100    2145 ..    2093    2169 .. 0.77
   5 ?   -1.3   0.2       1.1   1.2e+03      83     109 ..    3620    3646 ..    3608    3649 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8.8
                    E-TTHHHHHHHHCCSSS CS
  Acyl_transf_1  89 GHSlGElAaavvagals 105
                    GHS+G ++a+  a++ s
     CDO71836.1 285 GHSQGLVSALCIAASTS 301
                    9********99888765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
                    .HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHH CS
  Acyl_transf_1 135 aeeeeklrcqddvvgavansprrvvisgsqealrelvervsk 176
                    a+++++l ++ ++ ++ +n+p+  v++g++ +l  lv++++k
     CDO71836.1 367 AKTNKHLSDNSKIGVSLYNGPKAFVVTGPPRSLYGLVTHLRK 408
                    45566677899999************************9997 PP

  == domain 3  score: 241.0 bits;  conditional E-value: 2.1e-74
                     EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T......................................... CS
  Acyl_transf_1    1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe......................................... 53  
                     v+vf+GqGsQ+ GMGm+L+++s+a++ v+++ad ++ ++ygfs+ +++++np+                                         
     CDO71836.1 1686 VYVFTGQGSQEPGMGMDLYNNSPAARSVWDAADAHLTAVYGFSIIEIVKDNPKektihfggikgqairqrymdmtydtmdkdgnvktlplfgdi 1779
                     8********************************************************************************************* PP

                     .............TGGGSHHHHHHHHHHHHHHHHHHHHHTT..-TTSEEEE-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEE CS
  Acyl_transf_1   54 .............glldaiqfvqpaLaavqialaellkskG..vrpaavvGHSlGElAaavvagalsseeallavvlrsrlmmqlagpgdmaav 132 
                                  gll a+qf+q+aL++ + a++e+++s G  +r+ a++GHSlGE++a+++ +++ ++ +l+ vv++++++mq a+++d+  +
     CDO71836.1 1780 nvrtqrytfshpnGLLFATQFAQIALVVTERAAFEDMRSRGlvQRDSAFAGHSLGEYSALASIADVLAISSLVDVVFYRGITMQRAVERDAQNR 1873
                     ******************************************99************************************************** PP

                     CS.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHH CS
  Acyl_transf_1  133 elaeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstslde 226 
                     ++             + ++a +p+r+  +++ +alre+ve++++++ g l e+vn++v+ +q++++++  a+++++++++  kv ki++ +l e
     CDO71836.1 1874 SN-------------YAMCAVNPSRISKTFNDAALREVVEDIAQRT-GCLLEIVNFNVEGQQYVCAGELVALQTLTNVLNYLKVEKIDIAKLAE 1953
                     **.............*******************************.*********************************************** PP

                     H....HHHCHHHHHHHHHHHCHCCHCC....HHTTS.SSECC-CCEECSSSSCCHCCCCCCCHH.......GGG-TCCCCCCTEETTSS-..HH CS
  Acyl_transf_1  227 s....serelsaeywvanlrspvrfae....avlsa.aetiplvfveispHslllaalektlks.......aedvksatlvGklkrdltd..fl 302 
                     +    + +e+ +e+ +  + ++   ++     +l++ ++tipl ++++++Hs +l a++ +++         +  ++ tlvGk+ ++l +  f+
     CDO71836.1 1954 KftidQVKEMLGEIVNSCFAKAKEQQAkegyIKLERgFATIPLPGIDVPFHSRYLWAGVMPFRAylskkinPAHLNPDTLVGKYVPNLVAkpFQ 2047
                     *999856666666666555555443331111567779***************************99999887889999**********9999** PP

                     HCHHHHHHHHHHC CS
  Acyl_transf_1  303 vtflyllakahlt 315 
                     v ++y++  ++ t
     CDO71836.1 2048 VSKEYAQLIYDQT 2060
                     *****99888765 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.6
                     HCHCCHCCHHTTS.SSECC-CCEECSSSSCCHCCCCCCCHHGGG-T CS
  Acyl_transf_1  242 rspvrfaeavlsa.aetiplvfveispHslllaalektlksaedvk 286 
                      spvr  e+   +  +   + f+ei p ++l+    +tlk + + +
     CDO71836.1 2100 ASPVRWIETQDILfTQYCFERFIEIGPSPTLTGMATRTLKAKYETQ 2145
                     567777777666666677788*******************854444 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.1
                     TTSEEEE-TTHHHHHHHHCCSSSHHHH CS
  Acyl_transf_1   83 rpaavvGHSlGElAaavvagalsseea 109 
                     ++  + GHS G +Aa   ag l s ea
     CDO71836.1 3620 AQKSLCGHSKGGSAAWQLAGLLQSVEA 3646
                     577789****************99998 PP

>> Fas_alpha_ACP  Fatty acid synthase subunit alpha Acyl carrier domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.1   0.0   3.2e-75   3.4e-72       1     162 []    2213    2374 ..    2213    2374 .. 1.00

  Alignments for each domain:
  == domain 1  score: 242.1 bits;  conditional E-value: 3.2e-75
  Fas_alpha_ACP    1 eDepvkavdivraivaqklkkkldevplsksikdlvgGkStlqNEilgdLqaEfgslpekaedlpleelaealqesfsGklGkqssslisrlvs 94  
                     eD+p+ka+d++ ai+aqklkkk+de+plsksikdlvgGkSt+qNEilgdLq Ef+s+pekae+lpleel+++++ +f G+lGk++s+lisrl++
     CDO71836.1 2213 EDAPLKAIDVLVAIIAQKLKKKVDEIPLSKSIKDLVGGKSTMQNEILGDLQLEFSSAPEKAEELPLEELGSSMSVGFPGTLGKYTSGLISRLIG 2306
                     79******************************************************************************************** PP

  Fas_alpha_ACP   95 skmpggfnlaairkyLekrwglgpgrqdsvlllavtsePakRlgseaeAkafldsvvqkyakkagisL 162 
                     +kmpggfnl+ai++yL k+wglgp+r+d+vlll+ t+ePakRlgseaeAka+ld vv  ya+++gisL
     CDO71836.1 2307 GKMPGGFNLSAIKSYLAKTWGLGPSRADGVLLLGATMEPAKRLGSEAEAKAWLDGVVGIYAQRSGISL 2374
                     ******************************************************************98 PP

>> FAS_meander  Fatty acid synthase meander beta sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.0   4.5e-50   4.7e-47       2     146 .]    1144    1290 ..    1143    1290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 4.5e-50
  FAS_meander    2 selpseeewlellageelsWlralltsetivqgkklveNPlrrllaprkgqlveieeadspektvvtvkeakesgel...kkaveiklsed.keIs 93  
                   + lp++++wle++ag++lsW rallts+tivqg+++v+N +rrl+aprkgq+v +e++ s  ++++++ +a+++ge+   +ka+e ++++  + I+
   CDO71836.1 1144 QPLPETSAWLETIAGTQLSWARALLTSKTIVQGTAYVDNHMRRLFAPRKGQKVVVETDGSCPTKITVFGAARSHGEHdpsFKAIEASFDAAkSVIT 1239
                   579****************************************************988775444444445556666633368899999986257** PP

  FAS_meander   94 vtlieertaegesvpLeleFeYkpetglapIhEvmegrndrikeFYwklWfge 146 
                   vt++eer+  g++vpL+l F Ykp++g++pIhEv+++rn+rik+FYwklWfg+
   CDO71836.1 1240 VTIYEERR--GVAVPLPLLFVYKPSMGYNPIHEVADDRNKRIKQFYWKLWFGD 1290
                   ********..99***************************************97 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   1.5e-38   1.6e-35       1     239 [.     171     426 ..     171     427 .. 0.90
   2 ?   -0.4   0.1      0.75     8e+02      82     149 ..    1797    1864 ..    1790    1908 .. 0.58

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 1.5e-38
         SAT   1 llFGDq.tad.vlpeLrkLlqakenplLrsFLekasealraeisrlpaaerkslp...rf.tslqellerysesglkspalssallciaqlaqfivy.. 91 
                 +lFG+q t++ +++eL++L+   ++p++++FL+++++ +   + + +++e+  +    ++ ++l+    r++ ++l+s ++s++l++++ql q++v   
  CDO71836.1 171 ALFGGQgTNEvYFDELQTLY-DIYQPYVSQFLTNVTRDILVPLVEESEEESF-YThglDViSWLSGSSPRPPVAYLASIPISFPLIGLTQLTQYLVVcr 267
                 59********9*********.*****************99998886555552.22468555************************************65 PP

         SAT  92 .leenpeeypspestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevar...........vaarle..egsssssesWslavtglseee 176
                   + +p ++ s+   + +G+++Gl++A ++a+s+s +++ + a +a++++f  Gl+ ++           v++++e  eg      s++l+vtgl  ++
  CDO71836.1 268 vSNVTPGDLLSR-LRGSTGHSQGLVSALCIAASTSYESFAENASKALKWLFYSGLRGQQafpvlaleptiVQDSIEggEG----APSPMLSVTGLALKD 361
                 334556666654.4599***********************************************9999999999994444....456************ PP

         SAT 177 lekalaefneekglppasrvyisavssss.vtisGpPstl...eallksskakkkkkksklpiyapy 239
                 le+++a++n++ +    s++ +s++++++ ++++GpP++l    + l++ +a + +++sk+p ++++
  CDO71836.1 362 LENHIAKTNKHLS--DNSKIGVSLYNGPKaFVVTGPPRSLyglVTHLRKVRAPSGLDQSKIPYSQRK 426
                 ***********99..88*********9999**********99999*****************99986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.75
         SAT   82 iaqlaqfivy......leenpeeypspestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevar 149 
                   +q+aq          +e+ ++++  + ++  +G++ G  +A a     s++++++++   v v+f  G+ ++r
  CDO71836.1 1797 ATQFAQIALVvteraaFEDMRSRGLVQRDSAFAGHSLGEYSALA-----SIADVLAIS-SLVDVVFYRGITMQR 1864
                  444444444422366667777777777799********999977.....445555443.456666666666666 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       8.5     9e+03      87     115 ..    1382    1410 ..    1381    1414 .. 0.81
   2 !   96.2   0.0   9.4e-31   9.9e-28      18     117 ..    1568    1667 ..    1550    1672 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8.5
                       S--BTTCEEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas   87 kpVlpgdtlkvelevvgkrdvrktkkvev 115 
                       kp  +gd  k+e+  vg+++ +  k+v+v
       CDO71836.1 1382 KPLKAGDVCKAEARIVGVTNSDAGKTVKV 1410
                       78889************999987766655 PP

  == domain 2  score: 96.2 bits;  conditional E-value: 9.4e-31
                       EEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas   18 vteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkvelevvgkrdvrk 109 
                       +++a++++y  vsgD+npiHv+p f+ +a ++g+I+hGm ++a+ +++ve+ ++++ + rv +++v+F+++Vlpgd+l+v+++++g+rd+  
       CDO71836.1 1568 TAPATNEPYSKVSGDFNPIHVNPYFSDYAALPGTITHGMWSSAATRRYVETVVAQGKPERVIAYDVSFVGMVLPGDELQVKIKHTGMRDGNF 1659
                       55***************************************************************************************986 PP

                       EEEEEEEE CS
  MaoC_dehydratas  110 tkkvevtk 117 
                        ++ve+ +
       CDO71836.1 1660 FVTVETVN 1667
                       66666655 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.3   2.9e-29   3.1e-26      50     253 .]    3226    3437 ..    3210    3437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 2.9e-29
                     STTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS.-HHTC....TTGGEEEEEEESSTHHHHHHHHHHHTT. CS
  ketoacyl-synt   50 paraagkiktklggfldvddfdpeffgispreaeamdpqqrllleaawealedagl.tpeel....dgsrvgvfiGvgagdyaalaaldedgs. 137 
                     +++++g+i+t          +d+  +gi+++  +++d+ + ++l++a+eal+ +g+ +p el    + s+vg  +G+g+g  + l+ + +d + 
     CDO71836.1 3226 SRTVGGQIPT---------GWDAGRYGIPADIIAQVDRTTLWALVCAAEALNMSGItDPYELyqhmHPSEVGTAVGSGMGGMESLSRMFKDRRd 3310
                     6889999998.........79***********************************55556676655556**********77666655555554 PP

                     GGGSCTTHHHHHSTTHHHHHHHHH.HT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSG..... CS
  ketoacyl-synt  138 evkaspkavgavlanviagrisya.lglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgr..... 225 
                     e+++  ++++ +  n++ag +++  l   Gp   ++ AC+++l  v+ a++ l +g+a+v+laGG + +l++e+ + f++++++s+ +      
     CDO71836.1 3311 EKEVQNDILQETFINTTAGWVNLLlLSSSGPIKIPVGACATALQSVEIACDTLLTGKAKVMLAGGFD-DLSEEGSYEFANMKATSNAETefamg 3403
                     666666888889***********989*****************************************.99999999******888874434555 PP

                     ...GGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt  226 ...ckafdpka...dGfvlGEGvGavvLkrleda 253 
                        ++ ++p     +Gf+ ++G+G+ vL+++++a
     CDO71836.1 3404 repTEMSRPTTttrSGFMEAQGAGVHVLMSAKTA 3437
                     56677777777888**************998876 PP

>> FAS_N  N-terminal domain in fatty acid synthase subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   1.7   4.3e-28   4.6e-25       2     128 ..      14     141 ..      13     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 4.3e-28
       FAS_N   2 lrplslthgslevsilvpa..slylaaeqLrdeFtatlvaps...eeleqeeeplseieLlakFLgyvaksiestesstsqfedvlklvleefessyLk 95 
                 +rp++++ gs+++si+v++  +++ aae+LrdeFt+ +   +    + e e+  ++++eL+a+FL + a++ +++++s+++++++l   l+ f++syL+
  CDO71836.1  14 TRPIQIQSGSIRISIPVSTqaDEWTAAEVLRDEFTHIQTTDDaieTTAELENATEATVELFARFLRFAAEKLDEDAQSEAARTSILLKSLKYFTASYLS 112
                 8*****************9889**************77776677566777888999*****************999*********************** PP

       FAS_N  96 kndihalvsnLpsettllakkeviraYykalal 128
                 ++dih ++ ++++e     +k v+++Y++a+a+
  CDO71836.1 113 SQDIHVIAAAFDTE----VRKTVLASYFTAIAA 141
                 ************55....79**********986 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   6.2e-18   6.5e-15      30     117 ..    3566    3655 ..    3538    3656 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 6.2e-18
                       HHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG..SCTSEEE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   30 iekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar..kqplavgSvKsniGHleaAaGvaelikvvlalkhgvipptlnl 117 
                       +++ala  g++++d+++++ hgt+t ++ ++E++  ++vf + +r   + ++++++Ks+ GH+++++++ +l+ ++++++ g++p + n 
       CDO71836.1 3566 LRRALAVWGLTADDIGVLSIHGTSTGANEKNETHIWNDVFTNLGRthGNAVPIMAQKSLCGHSKGGSAAWQLAGLLQSVEAGIVPGNRNA 3655
                       89******************************************999889************************************9986 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   7.4e-17   7.8e-14       1     106 [.    3824    3924 ..    3824    3938 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 7.4e-17
                  EEEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSS.S--GGG-EEEE-TTS-EEEE-S-SSEEE CS
        ACPS    1 gvGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrk.lldfksievledstgrptlellseakkk 96  
                  gvG+D e +s+++   +++++ +++r ft++E+++++s+++++    fa++W  KEA++K+lg + +     +k+ie+l d++g+pt+ l+++ak  
  CDO71836.1 3824 GVGVDQELISAVP---SWNPT-FVERNFTDAEIAYCRSQPSPES--SFAARWVGKEAVFKSLGVASKGaAAAMKDIEILPDASGVPTVVLHGDAKAA 3914
                  79*****777777...45666.*********************9..****************9988445********************99999988 PP

                  EEEEE-.... CS
        ACPS   97 awkleslkid 106 
                  a   + +k++
  CDO71836.1 3915 AEAKGIKKVH 3924
                  7666665555 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   6.4e-15   6.7e-12       8     130 ..    1304    1422 ..    1300    1424 .. 0.85
   2 ?   -2.6   0.0       5.2   5.5e+03      86     129 ..    1637    1673 ..    1631    1675 .. 0.66

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 6.4e-15
  MaoC_dehydrat_N    8 epvkaevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkapell.....ealgidlsrllhgeqefey...hepiraG 91  
                       ++ +  ++++++ +f++ vg+  +a+ +         ++++aP++f+iv++++a  ++       +++dl +l+h+++ f++   ++p++aG
       CDO71836.1 1304 TGPEVIIDESDIESFCSVVGNQGEAFKSART------ETPMAPMDFAIVAGWQA--IMkaifpASVDGDLLKLVHLSNGFRLlegAKPLKAG 1387
                       5667889***************999977666......59*************99..5522234666999*************87778***** PP

  MaoC_dehydrat_N   92 DelttesriadvydkkgvGalefivvettvtnqrGepva 130 
                       D    e+ri  v +    +a++ + v+ +v+ + +e+v 
       CDO71836.1 1388 DVCKAEARIVGVTNS---DAGKTVKVKGYVI-RGDERVI 1422
                       **************6...89999**999999.7777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.2
  MaoC_dehydrat_N   86 epiraGDelttesriadvydkkgvGalefivvettvtnqrGepv 129 
                        ++ +GDel+++ + + ++d        f++vet+  n rGe+v
       CDO71836.1 1637 GMVLPGDELQVKIKHTGMRDG-----NFFVTVETV--NSRGEKV 1673
                       567788888888877777772.....235555543..4688887 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.011        12       7      49 ..     521     563 ..     520     571 .. 0.86
   2 !   22.6   0.0   5.8e-08   6.1e-05       1     166 [.    2727    2902 ..    2727    2931 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
                 STTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTS CS
   adh_short   7 GassGIGraiakelakeGakvvvvdrseekleevakelkeega 49 
                 G+ sGIG  +a++l  +G++vvv++ +++  +e+++ l+ +++
  CDO71836.1 521 GGLSGIGPLTARNLEGRGVRVVVAGDKAKGPAELYDALNIKAE 563
                 899********************99999999999998876544 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 5.8e-08
                  SEEEEESTTSH.HHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S.S- CS
   adh_short    1 kvvlvtGassG.IGraiakelakeGakvvv.vdrseekleevakelkee....gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi.tg 89  
                  k +l tG ++G IG +i+k l++ Ga+vv+ ++r +++  e ++ + +     g+ +++++++  ++++vealv+ + + l   ld +   A++ ++
  CDO71836.1 2727 KNALLTGVGKGsIGVEIVKGLLSGGAHVVItTSRYSRATVEYYQDIFQRfgskGSALTVVPFNQGSKQDVEALVDYIYSILgLDLDYILPFAAVpEN 2823
                  689****99988******************877777777777777766665547779999*********************669**********866 PP

                  -SSGGGCSHHH..HHHHHHHHTHHHHHHHH..HHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHH CS
   adh_short   90 sgpfselseee..wervievNltgvflltr..avlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslake 166 
                   +++  ++++     r++ vNl  ++ +++   + ++++ +    I   s ++g+ ++ g   Ys sK  ++ l++ +  e
  CDO71836.1 2824 GREIDGIDDKSelAHRIMLVNLLRLLGAVKnkKASRHFVTRPTQVILPLSPNHGLFGNDG--LYSESKISLETLFNRWNSE 2902
                  6677777766667999*****998887774226899999999999999999999887765..6999999999999888777 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.37   3.9e+02       3      30 ..     523     550 ..     521     564 .. 0.80
   2 !   16.8   0.0   3.6e-06    0.0038       2     152 ..    2734    2896 ..    2733    2907 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.37
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea 30 
                    sgIG  +A+ l  +G +vv++  + ++
    CDO71836.1 523 LSGIGPLTARNLEGRGVRVVVAGDKAKG 550
                   58******************99777666 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3.6e-06
                    TT.TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE..E...EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EG.CSS- CS
  adh_short_C2    2 aa.sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae..v...lecDVtdeeqvealveevvekf.gklDilvnnagiapk.lkgp 86  
                    +   +IG +i+k l + Ga+vv+t  + ++   +  +++ +++g++  +   ++ +  ++++vealv+ + + +   lD+++  a++ ++  + +
    CDO71836.1 2734 VGkGSIGVEIVKGLLSGGAHVVITTSRYSRatVEYYQDIFQRFGSKgsAltvVPFNQGSKQDVEALVDYIYSILgLDLDYILPFAAVPENgREID 2828
                    55579******************98776664579999999999977652456**********************559*************77777 PP

                    GGGH-HHHHHHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHH CS
  adh_short_C2   87 fletsreefdraldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnynaygaaKaalealt 152 
                     ++ + e  +r++ vnl  l+  +k  +   ++  +   v l     +  + n   y+ +K +le l 
    CDO71836.1 2829 GIDDKSELAHRIMLVNLLRLLGAVKNKKAsrHFVTRPTQVILPLSPNHGLFGNDGLYSESKISLETLF 2896
                    77778888888888887766655554333335555555555555555778888889999999999875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.2   2.3e+03       7      30 ..     521     544 ..     520     559 .. 0.86
   2 ?   10.8   0.0   0.00032      0.34       4      75 ..    2730    2803 ..    2728    2819 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.2
                 TTTSHHHHHHHHHHHHHHS-EEEE CS
          KR   7 GGlGgLGlelarwlaekgarhlvl 30 
                 GGl g+G  +ar l  +g r +v 
  CDO71836.1 521 GGLSGIGPLTARNLEGRGVRVVVA 544
                 9*****************987764 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00032
                  EEET.TTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHH CS
          KR    4 litG.GlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleei 75  
                  l+tG G G++G e+++ l++ ga+ ++ +sR + a+ e  ++ ++++ ++g   +vv+    +k++veal++ i
  CDO71836.1 2730 LLTGvGKGSIGVEIVKGLLSGGAHVVITTSRYSrATVEYYQDIFQRFGSKGSALTVVPFNQGSKQDVEALVDYI 2803
                  6777689************************86355667788999***********************999866 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.25      84     133 ..    3348    3397 ..    3343    3420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
                  GGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSS CS
  Thiolase_N   84 vcsSglkavalaaqsiaageadvvvagGvEsmsnaptaestdvrsglklg 133 
                  +c+ +l++v  a++ + +g+a+v++agG   +s+   +e +++ +  + +
  CDO71836.1 3348 ACATALQSVEIACDTLLTGKAKVMLAGGFDDLSEEGSYEFANMKATSNAE 3397
                  6********************************99888776666555444 PP

>> DUF3597  Domain of unknown function (DUF3597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.1   4.3e+03       2      45 ..    1089    1132 ..    1088    1149 .. 0.76
   2 ?    8.9   2.0     0.002       2.1      16      77 ..    2179    2248 ..    2163    2250 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.1
                  HHHHHHHHT--..-SS-TTTT-------SS---S.--------- CS
     DUF3597    2 fgkilskifgkaaaaaaapaasaapaataaaaaaaaaaPaaaaa 45  
                  +g+i+sk+++k  a+  + ++s+ p+ +  a+a  aa Pa a+a
  CDO71836.1 1089 LGNITSKLVEKLVARLYNGDESKIPTVEYLAPAPVAARPAIAPA 1132
                  79999999999888888888888888888777777777776655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.002
                  SS-TTTT-------SS---S.---------SS.........EE-.HHHHHHHHHHHSS---TTT-HHHHH CS
     DUF3597   16 aaaapaasaapaataaaaaaaaaaPaaaaaaaaa.......vdv.eavlealaaksgeklnwrtSivDLl 77  
                  +++a aa +apaat++a+a  aaaP +aaaaa+        +dv  a++ +  +k+ ++    +Si DL+
  CDO71836.1 2179 SSDADAAPSAPAATPTASAPVAAAPVPAAAAASIedaplkaIDVlVAIIAQKLKKKVDEIPLSKSIKDLV 2248
                  2333344455555555555577777777776655778888899845888999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.79u 0.34s 00:00:02.13 Elapsed: 00:00:00.57
# Mc/sec: 20652.66
//
Query:       CDO71837.1  [L=312]
Description: hypothetical protein BN946_scf184939.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0067   16.6   0.1        2.9    8.1   0.0    3.2  3  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.27   4.8e+03     100     139 ..       7      42 ..       2      43 .. 0.73
   2 !    8.1   0.0   0.00016       2.9       3      19 ..      47      63 ..      45      67 .. 0.85
   3 !    4.9   0.0    0.0015        28      20      62 ..      78     119 ..      74     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.27
                      HHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHH CS
  CTP_transf_like 100 wkeleeilgnvklvvvsrpekqanvllkaekrtngiSstk 139
                       +++++ l+  +lv  s p    ++ l++++  +++S+  
       CDO71837.1   7 VQRVQKGLSLIELVHTSHP----RWPLPPQPSQPPYSTFH 42 
                      5567777777777777766....88899999999999875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00016
                     EE--TT--HHHHHHHHH CS
  CTP_transf_like  3 gGtFDpiHlGHlrlleq 19
                     + +F+p++l+Hl+l++ 
       CDO71837.1 47 DSSFNPPTLAHLALANT 63
                     669**********9975 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0015
                      HHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHHTTCT CS
  CTP_transf_like  20 akklleedlivgvpsdeppkkkkkplasaeeRlemlelakevd 62 
                      a + ++   + ++   + +k+ k++ a++e+R+em+ l++++ 
       CDO71837.1  78 ASRDFDA-RLLLLSVRNADKQLKPGDATYEQRIEMMVLLAHDL 119
                      5666777.566667777777778999999*****998886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 2051.24
//
Query:       CDO71838.1  [L=111]
Description: hypothetical protein BN946_scf184939.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   12.7   2.7      0.053   12.5   2.7    1.0  1  DEC-1_N   DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.7     3e-06     0.053     119     182 ..      10      76 ..       4      95 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-06
     DEC-1_N 119 apalaaapppapapvp...ddpap.apaapqaaafaffnpanldassllgqllaqlpavpaipagtld 182
                  pa+aa+p  a ap+p   d+ +p  p++p++ + + +  + ++ s  l+  +   p+ p ++a t +
  CDO71838.1  10 TPAPAAPPAEASAPAPaekDKDTPdRPESPKNDTVTDLIKSTFEVSVTLAD-QQADPNSPLFSAKTFE 76 
                 467777777555555444755554269*******************88888.4445788888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 826.09
//
Query:       CDO71839.1  [L=366]
Description: hypothetical protein BN946_scf184939.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-28   98.6   0.2    7.1e-28   97.6   0.0    1.6  2  DEAD        DEAD/DEAH box helicase
    1.1e-23   83.7   0.1      4e-23   81.9   0.1    2.0  1  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.035   14.4   0.2       0.22   11.8   0.1    2.4  2  AAA_22      AAA domain
       0.05   12.9   0.1      0.099   12.0   0.1    1.4  1  CMS1        U3-containing 90S pre-ribosomal complex subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.6e-31   7.1e-28      17     174 ..       1     166 [.       1     168 [. 0.84
   2 ?   -2.8   0.0         1   4.6e+03     100     112 ..     260     274 ..     224     315 .. 0.49

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.6e-31
                 EEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS............-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaflipvlqivyet......kgktg............pkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 ++++ + G+GKT+af++ +l++v  +      +                 +al+++P+reLa+q+++ +  ++k++ ++++  i+++  r   ++   +
  CDO71839.1   1 MIGQSQSGTGKTAAFVLTMLSRVDFSinkpqvH---SntsdgpsvrlipVQALCLAPSRELARQIMSVVVAMGKFTPVQTEYAIKDNLPRGASNV---T 93 
                 58899***************9994336655551...0455667777777*************************998888877776555554444...4 PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ++i+vgtpg + dl++++ +++s+v+++VlDEad++ld+ g +++  r+ n lp   ++ +   q+i++SAT+p+ v+
  CDO71839.1  94 AHIIVGTPGTMTDLIRRKVIDVSEVKVFVLDEADNMLDKdGLGEQTLRVKNMLP---KNRP--VQIILFSATFPDHVR 166
                 ***************************************9*************6...3344..56********98776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
                 EEEEEH..HHHHHHH CS
                 xxxxxx..xxxxxxx RF
        DEAD 100 ivvgtp..grlddll 112
                 ++++t    r +d+l
  CDO71839.1 260 VLITTNviARGIDIL 274
                 222222113333333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   8.9e-27     4e-23      17     111 .]     218     317 ..     189     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 8.9e-27
                 SEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS...............SSHHHH CS
  Helicase_C  17 gkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp...............rnvtsy 100
                 g+++if+++             +g kva lhg   ++er++i+++f++g+ +vLi+t+v++rGidi +vn+V+n+dlp                ++++y
  CDO71839.1 218 GQSIIFCQRM--------T--AEGHKVASLHGAKDASERDQIIDNFREGKEKVLITTNVIARGIDILQVNMVVNYDLPlmnerdhhgnkedarPDIETY 306
                 3333333322........2..459******************************************************988876666655554446*** PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+riGRtgR+g
  CDO71839.1 307 IHRIGRTGRFG 317
                 *********86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.8e-05      0.22      52     128 ..      54     157 ..       5     160 .. 0.50
   2 ?   -3.1   0.0       1.9   8.5e+03      37      57 ..     183     208 ..     167     221 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
      AAA_22  52 sskdllrellralglelka........................erlsseellealeqalrarav....ielliiDEaqh.lrseealeeLrsllnl..s 119
                  s++l+r++ + +   +k                           ++   + +++++ +         ++++++DEa++ l+++ + e+  +  n   +
  CDO71839.1  54 PSRELARQIMSVVVAMGKFtpvqteyaikdnlprgasnvtahiIVGTPGTMTDLIRRKV----IdvseVKVFVLDEADNmLDKDGLGEQTLRVKNMlpK 148
                 55555555555555444445666666666665555544433333333333444444444....4555599*********66433333333333333556 PP

      AAA_22 120 rkgvqliLv 128
                   +vq+iL+
  CDO71839.1 149 NRPVQIILF 157
                 999999987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
      AAA_22  37 e.....erpevvfvtlpsstsskdll 57 
                 +      + +++++++  ++   ++l
  CDO71839.1 183 RnelsvDNIRQFYMDCRDEEHKYEVL 208
                 13455567777788887777555554 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.2e-05     0.099     180     210 ..      96     126 ..      88     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
        CMS1 180 iavGtpgRildLleeeslsvdeLkrivlDas 210
                 i vGtpg ++dL++ +++ v+e+k  vlD +
  CDO71839.1  96 IIVGTPGTMTDLIRRKVIDVSEVKVFVLDEA 126
                 789*************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2541.37
//
Query:       CDO71840.1  [L=201]
Description: hypothetical protein BN946_scf184939.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1387.48
//
Query:       CDO71841.1  [L=214]
Description: hypothetical protein BN946_scf184939.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   18.3   4.1       0.08   13.4   0.9    3.0  3  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0013        24       1      12 [.     113     124 ..     113     125 .. 0.91
   2 !   13.4   0.9   4.5e-06      0.08      23      67 ..     123     163 ..     121     164 .. 0.80
   3 ?    0.7   0.0     0.041   7.4e+02      48      66 ..     180     198 ..     165     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0013
      DUF202   1 rdglAnERTfLa 12 
                 ++++AnER +La
  CDO71841.1 113 KVWFANERSTLA 124
                 68******9998 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.5e-06
      DUF202  23 lglallrffltgepsalgkilglilivlgiltllvglvrylrrqr 67 
                 l+lal++     ++ ++++ +++++++l++++l++g+  y++r +
  CDO71841.1 123 LALALFN----ASKDDISRHFAYAYAALSVAVLVYGYAVYQHRIT 163
                 4555555....4555667999********************9986 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.041
      DUF202  48 ivlgiltllvglvrylrrq 66 
                 +++++++++ +l +++ r+
  CDO71841.1 180 VAISVFLFFAVLANFIIRV 198
                 5566666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1446.48
//
Query:       CDO71842.1  [L=382]
Description: hypothetical protein BN946_scf184939.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-41  140.8   0.4    4.6e-41  140.4   0.4    1.2  1  DnaJ_C    DnaJ C terminal domain
    1.8e-28   98.4   1.7    2.8e-28   97.8   1.7    1.3  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.07   13.1   0.0       0.15   12.0   0.0    1.5  1  RPT       A repeated domain in UCH-protein


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.4   7.7e-45   4.6e-41       3     148 .]     209     366 ..     207     366 .. 0.88

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 7.7e-45
                 EEEEE-HHHHHH-.EEE.EEEE.........TEEEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHT. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
      DnaJ_C   3 veleisleelykGktkkikikrnvi..kkekktlevkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallG. 97 
                  +l++sle+ly+G+tk +k++r+     +e+k+le++i +G+k+g+kir+++ G+e+  ge+ Dl++++++kph++F+r+gndl+++v+i+l++al+G 
  CDO71842.1 209 RPLKVSLEDLYNGATKHLKVSRRLLngGTEEKVLEIQIAPGWKSGTKIRFPHAGNEQSnGESQDLVFVVEEKPHERFTREGNDLVTHVKIPLVDALTGs 307
                 679******************998888778889**********************5555***************************************9 PP

                 ..EEEEEE-S.S-EEEE....EE--TT-EEEETT-S-EET.....TEE--EEEEEEEE-- CS
                 ..xxxxxxxx.xxxxxx....xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
      DnaJ_C  98 ..gklevptl.dgkvkl....kitqpgevlrikgkGmpklk..kpgkrGdlyvevkvefP 148
                   +   v+ l ++k+++     i++pg++ +++g+Gmp+ k  + +k+Gdl+v+++v+fP
  CDO71842.1 308 gsK-QIVEHLdGRKIQVpvpfGIVKPGQTTVLPGEGMPIRKegSVKKKGDLIVKWDVVFP 366
                 742.3455563334445444477******************88899*************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   1.7   4.7e-32   2.8e-28       1      63 []       4      66 ..       4      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 4.7e-32
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyY++Lgvs+das+d+IkkaY+k+alk+HPD+n++++ea++kFkei+eA+evLsd++kR++YD
  CDO71842.1  4 DYYKLLGVSRDASDDDIKKAYKKMALKWHPDRNSGSEEASKKFKEISEAFEVLSDKQKRAIYD 66
                8*************************************************************9 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.4e-05      0.15       6      46 ..       6      50 ..       5      58 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
         RPT  6 yklLgidentdDdviitayqvkl...ed.dpsqkdklrrALkvIA 46
                yklLg++++++Dd i +ay+       + ++s  +++ + +k I+
  CDO71842.1  6 YKLLGVSRDASDDDIKKAYKKMAlkwHPdRNSGSEEASKKFKEIS 50
                9******************96554443323466666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2649.90
//
Query:       CDO71843.1  [L=1045]
Description: hypothetical protein BN946_scf184939.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-23   82.6   7.0    1.5e-08   34.5   0.1    5.7  5  Kelch_4   Galactose oxidase, central domain
    1.3e-19   70.0  15.8     0.0001   22.5   0.2    7.0  6  Kelch_3   Galactose oxidase, central domain
    7.1e-19   67.4   2.2     0.0014   18.6   0.0    6.3  6  Kelch_5   Kelch motif
    4.6e-13   48.5   0.2    0.00016   21.2   0.0    4.6  4  Kelch_1   Kelch motif
    5.2e-13   48.4   0.6     0.0068   16.3   0.1    5.1  4  Kelch_2   Kelch motif
    1.8e-12   47.1   8.0    4.9e-06   26.6   0.2    4.9  4  Kelch_6   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012       3.6       1      24 [.      31      53 ..      31      62 .. 0.82
   2 ?   -0.2   0.0      0.36   1.1e+03       5      20 ..     104     119 ..     104     143 .. 0.85
   3 !   34.5   0.1   5.2e-12   1.5e-08       2      46 ..     163     210 ..     162     213 .. 0.91
   4 !   19.5   0.1   2.4e-07   0.00072       4      49 .]     217     271 ..     216     271 .. 0.90
   5 !   19.6   0.1   2.3e-07    0.0007       1      44 [.     272     318 ..     272     342 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
     Kelch_4  1 pRaghsatsipdgtiylfGGrged 24
                pR+g ++  + d+ ++++GGr+++
  CDO71843.1 31 PRWGQAVSLV-DDVLFVHGGRTDQ 53
                5666666666.79********996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.36
     Kelch_4   5 hsatsipdgtiylfGG 20 
                 h++ + +  ++ lfGG
  CDO71843.1 104 HTLSAFNTTNLLLFGG 119
                 888899899******* PP

  == domain 3  score: 34.5 bits;  conditional E-value: 5.2e-12
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg..tllndlylldlstntWrrl..gs 46 
                 R++hsa s++ g+i+l+GG+ +dg   +++d y++d s  t+++l  ++
  CDO71843.1 163 RIYHSASSTG-GKIWLIGGEKADGsgNAFSDHYVYDPSGPTFTQLpsTN 210
                 9********6.**********************************5544 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 2.4e-07
     Kelch_4   4 ghsatsipdgtiylfGGrgedg...tllndlylldl..stntWrrl....gslPs 49 
                 gh+++++pd ++++fGG+++      +++ +++ld+  s+ +W+ l    ++lPs
  CDO71843.1 217 GHASIVLPDHRLIVFGGYSPSQgelLPFSTIWALDTtqSSLSWSSLsvsaSDLPS 271
                 8*******************978999**********88888**999887777775 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 2.3e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg.tllndlylldlstn..tWrrl 44 
                 pR+g++a  ++dg++ + GG+ +d+  +++d ++ld+++n  tW+ +
  CDO71843.1 272 PRRGFAAAILGDGRVLVQGGADADMqNVFSDGWVLDTTQNpmTWSAV 318
                 899*********************999*************9999755 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.1e-06    0.0034       2      49 .]      42     109 ..      41     109 .. 0.86
   2 ?   -0.2   0.0      0.44   1.3e+03      26      47 ..     151     169 ..     138     170 .. 0.75
   3 !   22.5   0.2   3.4e-08    0.0001       1      45 [.     172     219 ..     172     222 .. 0.81
   4 !   21.7   0.1   5.9e-08   0.00018       2      47 ..     226     279 ..     225     281 .. 0.89
   5 !   12.4   0.1   4.9e-05      0.15       2      47 ..     284     334 ..     283     336 .. 0.86
   6 ?    0.1   0.0      0.37   1.1e+03       9      46 ..     342     380 ..     341     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
     Kelch_3   2 drlyifGGlgd.......dgqdrlndvy......vydldtntWa...eiaslpp....aRaghaatai 49 
                 d l+++GG++d       ++ +++nd +      ++dl+++ W+    ++++p+    a a+h+++a+
  CDO71843.1  42 DVLFVHGGRTDqfnqygySTAPVNNDILilplnaSFDLSSPPWQyvsGCSDCPSsqgpAVAWHTLSAF 109
                 789**************999********99999999********88755555444446*******986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.44
     Kelch_3  26 ldtntWaeiaslppaRaghaat 47 
                 l+t +Wa   + p  R +h+a+
  CDO71843.1 151 LETASWA---NEPLRRIYHSAS 169
                 4444444...78999****997 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 3.4e-08
     Kelch_3   1 gdrlyifGGlgddg.qdrlndvyvydldtntWaeiasl..ppaRagha 45 
                 g++++++GG+ +dg +++ +d yvyd++ +t+++++s+  pp+  gha
  CDO71843.1 172 GGKIWLIGGEKADGsGNAFSDHYVYDPSGPTFTQLPSTngPPDLFGHA 219
                 689*********5559999****************8873255555555 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 5.9e-08
     Kelch_3   2 drlyifGGlgddgqdrl..ndvyvydl..dtntWaei....aslppaRaghaat 47 
                 +rl +fGG+ ++ ++ l  ++ +++d+  ++ +W ++    ++lp++R+g+aa+
  CDO71843.1 226 HRLIVFGGYSPSQGELLpfSTIWALDTtqSSLSWSSLsvsaSDLPSPRRGFAAA 279
                 799*******988888899********98778***88889999*********97 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 4.9e-05
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtn..tWaei...aslppaRaghaat 47 
                 +r+++ GG+++d+q++ +d +v+d+  n  tW  +   ++  p R ++aa+
  CDO71843.1 284 GRVLVQGGADADMQNVFSDGWVLDTTQNpmTWSAVdalSQVGPRRDHFAAA 334
                 578899*******************8888****885667788899999986 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.37
     Kelch_3   9 Glgd.dgqdrlndvyvydldtntWaeiaslppaRaghaa 46 
                 G+g+ ++ +++ +++++d + + ++ + ++ppa  + ++
  CDO71843.1 342 GFGFaQSAPVNASLLLFDASQGAFTGTYTPPPAVISPTS 380
                 67778999************9999999888888777665 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       3.4       3      38 ..      30      72 ..      30      75 .. 0.76
   2 ?    0.0   0.0       0.3   8.9e+02       4      22 ..     100     119 ..      93     125 .. 0.72
   3 !   16.6   0.1   1.9e-06    0.0058       2      39 ..     160     198 ..     159     200 .. 0.93
   4 !   16.2   0.0   2.7e-06    0.0079       2      40 ..     212     253 ..     211     254 .. 0.85
   5 !   18.6   0.0   4.7e-07    0.0014       1      42 []     269     311 ..     269     311 .. 0.89
   6 ?    0.4   0.0      0.22   6.7e+02       4      22 ..     326     344 ..     325     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
     Kelch_5  3 ppRaghcavtvsekiYvyGGkv......g.rdgsvsddvyvLd 38
                +pR+g ++  v++ ++v+GG++      g ++  v++d+++L 
  CDO71843.1 30 VPRWGQAVSLVDDVLFVHGGRTdqfnqyGySTAPVNNDILILP 72
                5899999***************666653234444468998885 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.3
     Kelch_5   4 pRaghcavtvs.ekiYvyGG 22 
                 + a h   + + ++++++GG
  CDO71843.1 100 AVAWHTLSAFNtTNLLLFGG 119
                 34455555556899*****9 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 1.9e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg.rdgsvsddvyvLdl 39 
                 P  R +h+a   ++ki+++GG ++  +g++++d yv+d+
  CDO71843.1 160 PLRRIYHSASSTGGKIWLIGGEKAdGSGNAFSDHYVYDP 198
                 888*********************999999*******97 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 2.7e-06
     Kelch_5   2 PppRaghcavtv.sekiYvyGGkvg..rdgsvsddvyvLdlp 40 
                 Pp ++gh+++++ ++ ++v+GG++    +  +++ ++ Ld++
  CDO71843.1 212 PPDLFGHASIVLpDHRLIVFGGYSPsqGELLPFSTIWALDTT 253
                 78899*******66**********855666669*****9985 PP

  == domain 5  score: 18.6 bits;  conditional E-value: 4.7e-07
     Kelch_5   1 iPppRaghcavtvs.ekiYvyGGkvgrdgsvsddvyvLdlpsf 42 
                 +P+pR+g++a++++ + ++v GG ++  ++v++d +vLd++++
  CDO71843.1 269 LPSPRRGFAAAILGdGRVLVQGGADADMQNVFSDGWVLDTTQN 311
                 6************55**********9666679*******9875 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.22
     Kelch_5   4 pRaghcavtvsekiYvyGG 22 
                 pR++h a+++++++++  G
  CDO71843.1 326 PRRDHFAAALGSEVLFGFG 344
                 9***********9998444 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.2   5.8e+02       7      22 ..      37      52 ..      34      62 .. 0.80
   2 !   21.2   0.0   5.5e-08   0.00016       1      44 [.     162     208 ..     162     210 .. 0.96
   3 !   14.5   0.0   6.6e-06      0.02       4      41 ..     218     261 ..     216     263 .. 0.89
   4 !    6.3   0.0    0.0024       7.2       2      37 ..     274     311 ..     272     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.2
                EEEETTEEEEEEEBCS CS
     Kelch_1  7 avvvggkiYviGGsdg 22
                +  v++ ++v GG+ +
  CDO71843.1 37 VSLVDDVLFVHGGRTD 52
                6679*********988 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 5.5e-08
                 BBBSEEEEEETTEEEEEEEBCS...SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1   1 aragagavvvggkiYviGGsdg...gnalssvevyDpetntWrelps 44 
                 +r +++a + ggki  iGG      gna s+ +vyDp   t+++lps
  CDO71843.1 162 RRIYHSASSTGGKIWLIGGEKAdgsGNAFSDHYVYDPSGPTFTQLPS 208
                 6889******************************************8 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 6.6e-06
                 SEEEEEETTEEEEEEEBCS....SSBEEEEEEEETT..TTEEEE CS
     Kelch_1   4 gagavvvggkiYviGGsdg....gnalssvevyDpe..tntWre 41 
                 +a+ v  ++++ v+GG++       + s+++++D++  + +W+ 
  CDO71843.1 218 HASIVLPDHRLIVFGGYSPsqgeLLPFSTIWALDTTqsSLSWSS 261
                 7889999****************************977777776 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0024
                 BBSEEEEEETTEEEEEEEBCS..SSBEEEEEEEETTTT CS
     Kelch_1   2 ragagavvvggkiYviGGsdg..gnalssvevyDpetn 37 
                 r  a+a   +g++ v GG d   +n  s+ +v+D+++n
  CDO71843.1 274 RGFAAAILGDGRVLVQGGADAdmQNVFSDGWVLDTTQN 311
                 6667777789*************************976 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0072        22       2      27 ..      32      56 ..      31      69 .. 0.89
   2 !   16.3   0.1   2.3e-06    0.0068       1      46 [.     162     207 ..     162     209 .. 0.95
   3 !   12.1   0.0   5.2e-05      0.15       3      28 ..     217     242 ..     215     259 .. 0.68
   4 !    8.5   0.0   0.00067         2       2      38 ..     273     309 ..     272     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0072
     Kelch_2  2 rgghsssvpggkiyvvGGahtdnpnl 27
                r g+++s +++ ++v GG+ td +n 
  CDO71843.1 32 RWGQAVSLVDDVLFVHGGR-TDQFNQ 56
                6699***************.888876 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.3e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 rr  hs+s+ ggki ++GG  +d+++ ++sd +v+d+++ +++ ++
  CDO71843.1 162 RRIYHSASSTGGKIWLIGGEKADGSGNAFSDHYVYDPSGPTFTQLP 207
                 6899*************************************99887 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.2e-05
     Kelch_2   3 gghsssvpggkiyvvGGahtdnpnls 28 
                 g+ s++ p+++++v+GG+ ++ + l 
  CDO71843.1 217 GHASIVLPDHRLIVFGGYSPSQGELL 242
                 45667789**********44444444 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00067
     Kelch_2   2 rgghsss.vpggkiyvvGGahtdnpnlsssdvhvldle 38 
                 r g++++  ++g+++v GGa + ++  ++sd +vld+ 
  CDO71843.1 273 RRGFAAAiLGDGRVLVQGGA-DADMQNVFSDGWVLDTT 309
                 5566666477**********.999999********986 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.41   1.2e+03       2      24 ..      32      58 ..      31      79 .. 0.72
   2 !   26.6   0.2   1.6e-09   4.9e-06       2      49 ..     163     212 ..     162     213 .. 0.95
   3 !   17.4   0.5   1.4e-06    0.0041       5      50 .]     219     273 ..     216     274 .. 0.89
   4 ?    4.1   0.0     0.021        63       2      36 ..     273     309 ..     272     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.41
     Kelch_6  2 raghslvsvggkiYifGGytds....s 24
                r+g ++ +v++ +++ GG+td+    +
  CDO71843.1 32 RWGQAVSLVDDVLFVHGGRTDQfnqyG 58
                667777779998999999999854440 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.6e-09
     Kelch_6   2 raghslvsvggkiYifGGytds..spylnkvwvydpetksWeqlpplpvp 49 
                 r +hs+ s ggki+++GG +++  ++++++ +vydp+  +++qlp+ ++p
  CDO71843.1 163 RIYHSASSTGGKIWLIGGEKADgsGNAFSDHYVYDPSGPTFTQLPSTNGP 212
                 669******************************************98876 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.4e-06
     Kelch_6   5 hslvsvggkiYifGGytds...spylnkvwvyd..petksWeqlp....plpvpr 50 
                  s+v+++ ++ +fGGy+ s     +++ +w +d   ++ sW+ l+    +lp pr
  CDO71843.1 219 ASIVLPDHRLIVFGGYSPSqgeLLPFSTIWALDttQSSLSWSSLSvsasDLPSPR 273
                 57899****************************8777899***977777899887 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.021
     Kelch_6   2 raghslvs.vggkiYifGGytds.spylnkvwvydpe 36 
                 r g+++++  +g++ + GG++++  + +++ wv+d  
  CDO71843.1 273 RRGFAAAIlGDGRVLVQGGADADmQNVFSDGWVLDTT 309
                 666666552668**********************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 6837.32
//
Query:       CDO71844.1  [L=901]
Description: hypothetical protein BN946_scf184939.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-23   83.7   0.0    2.3e-23   82.6   0.0    1.5  1  Transposase_21  Transposase family tnp2
    3.1e-05   23.6   0.0    7.3e-05   22.4   0.0    1.6  1  DUF4218         Domain of unknown function (DUF4218)
  ------ inclusion threshold ------
        7.1    7.0   7.8         24    5.3   7.8    1.9  1  HBS1_N          HBS1 N-terminus


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.9e-27   2.3e-23      21     153 ..     259     388 ..     251     411 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.9e-27
  Transposase_21  21 eefaedprnvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalke 115
                     ++f  d r++ lgl++dGf P+++   + + Wp++l +ynlPP + ++++n++   ++pGpk+P kd+d +l P v++l++l   Gv ++d+++ 
      CDO71844.1 259 HQFFADRRDIALGLSSDGFAPWRR--RKKTAWPIILYNYNLPPEIRFHKNNIIPLCVVPGPKKP-KDFDSFLWPAVEELLRLAV-GVPAFDSTSL 349
                     57889******************6..56789*********************9999********.8****************98.********** PP

  Transposase_21 116 ekfnlravllwtindfPalstlsGls.tkgklacvtCkk 153
                     + f+l+a l+    d Pa+s++  ++  +g + c +C+ 
      CDO71844.1 350 SPFSLHAYLVLVSGDMPAVSMIMQMKgHNGLFPCRMCTI 388
                     ********************9877651568889999975 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.2e-08   7.3e-05      36      85 ..     634     683 ..     596     694 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.2e-08
     DUF4218  36 vmvHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsiaE 85 
                 v  H  +H++d + + GPv   + +p+eR+  +l+  ++ + +p  si +
  CDO71844.1 634 VTIHALLHIADGIEVCGPVWTTWAFPMERFCGTLQPAIKSRRHPWSSINN 683
                 56799**************************************9988865 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.8     0.004        24       6      40 ..      67     126 ..      39     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.004
      HBS1_N   6 eddeeeeeee.........................eLsdedqarLrscldevrevLgeea 40 
                 e+ e++e+e+                         +Lsded+a Lr+   +v++ L eea
  CDO71844.1  67 EEVEYDEDEDvystdmgawdrlhgrfmqevaelenQLSDEDKAILRAFAFHVKNNLSEEA 126
                 44455555557888888999999999999999************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 6071.38
//
Query:       CDO71845.1  [L=378]
Description: hypothetical protein BN946_scf184939.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.4   3.4      0.024   14.4   3.4    2.4  3  DivIC      Septum formation initiator


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.4   1.4e-06     0.024      18      56 ..      77     115 ..      72     121 .. 0.85
   2 ?   -3.7   0.1      0.59   1.1e+04      57      69 ..     178     190 ..     177     193 .. 0.75
   3 ?   -5.2   3.9         1   1.8e+04      30      37 ..     293     300 ..     277     325 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedy 56 
                 +  +l++eiaal+a++++ ka +++Le e +++k+    
  CDO71845.1  77 SADDLQAEIAALTAQIKEEKAARKQLETEMSKMKKHTKT 115
                 56789****************************986655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.59
                 XXXXXXXXXXXXX CS
       DivIC  57 ieerARselglvk 69 
                 + e+AR+e  + k
  CDO71845.1 178 LYEVAREEQPYLK 190
                 6799999876665 PP

  == domain 3  score: -5.2 bits;  conditional E-value: 1
                 HHHHHHHH CS
       DivIC  30 qaelaklk 37 
                 ++e ++ +
  CDO71845.1 293 EEEEDQDQ 300
                 22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2419  (0.134921); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                       192  (0.0107089); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.48
# Mc/sec: 2369.87
//
Query:       CDO71846.1  [L=104]
Description: hypothetical protein BN946_scf184939.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-31  107.4   0.4    3.2e-31  107.4   0.4    1.3  2  ACBP      Acyl CoA binding protein
     0.0028   16.9   0.4     0.0036   16.5   0.4    1.1  1  DUF4886   Domain of unknown function (DUF4886)


Domain annotation for each model (and alignments):
>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.4   3.6e-35   3.2e-31       2      84 ..       4      86 ..       3      87 .. 0.95
   2 ?   -3.4   0.0       1.3   1.2e+04      71      79 ..      93     100 ..      90     103 .. 0.50

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 3.6e-35
                HHHHHHHHHH.H...HSTS---HHHHHHHHHHHHHHHTSS--S----TTSHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHH CS
        ACBP  2 eeFekavaavkklekklkkkpsneeklelYglyKqateGdvntsrPsaldfkgkaKwdaWkalkglskeeAkkkYiellkelv 84
                ++F+kava+v++l+k+ + +p++ee+l++Y +yKqat+GdvntsrP++ldf+gkaKwdaWk ++g+skeeA +kY+++l+e++
  CDO71846.1  4 AKFDKAVAIVQSLPKEGPIQPTQEEQLHFYKYYKQATVGDVNTSRPGMLDFVGKAKWDAWKGVEGTSKEEAYQKYVDKLIEIL 86
                79********9988855889************************************************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
                 HHHHHHHHH CS
        ACBP  71 eAkkkYiel 79 
                 eA kk+ie 
  CDO71846.1  93 EA-KKFIEE 100
                 33.345554 PP

>> DUF4886  Domain of unknown function (DUF4886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4     4e-07    0.0036      50     124 ..      28      98 ..      23     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4e-07
     DUF4886  50 enkaaYeYrkitvdgkktetkkvsleealkdekWDvvtlqqasglsgayetyepylkeLvdyvkkkapnkkaklv 124
                 e+ + Y+Y+k+ + g  ++t++  + + + + kWD     +  + + ++e y++y+++L+++++++ +++  k++
  CDO71846.1  28 EQLHFYKYYKQATVG-DVNTSRPGMLDFVGKAKWDAW---KGVEGTSKEEAYQKYVDKLIEILERANTEEAKKFI 98 
                 66789******6666.566677899**********75...34444557899999*********999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1249  (0.0696637); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 790.79
//
Query:       CDO71847.1  [L=489]
Description: hypothetical protein BN946_scf184939.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-26   90.9   0.2    2.5e-19   69.7   0.3    2.4  2  PH        PH domain
    4.2e-11   43.2   4.4    2.1e-06   28.1   5.7    3.3  2  PH_11     Pleckstrin homology domain
    5.4e-09   36.1   0.2    2.3e-06   27.6   0.4    2.8  2  PH_3      PH domain
    2.6e-06   27.6   0.4    5.5e-06   26.6   0.3    1.7  2  PH_8      Pleckstrin homology domain
    5.6e-05   23.0   0.0      0.013   15.3   0.0    2.2  2  PH_13     Pleckstrin homology domain
    0.00023   21.5   0.5      0.049   14.0   0.9    3.1  2  PH_9      Pleckstrin homology domain
     0.0042   17.2   1.7        4.1    7.5   1.7    2.8  2  Mcp5_PH   Meiotic cell cortex C-terminal pleckstrin homology
  ------ inclusion threshold ------
      0.012   15.9   0.0        5.4    7.4   0.0    2.3  2  PH_2      Plant pleckstrin homology-like region
      0.036   13.8   0.0        1.3    8.8   0.0    2.5  2  PH_17     PH domain
       0.14   11.9   0.0       0.49   10.2   0.0    1.9  2  PH_4      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.3   1.4e-22   2.5e-19       1     104 [.     124     217 ..     124     218 .. 0.84
   2 !   18.8   0.0   9.6e-07    0.0017      66     104 ..     375     409 ..     346     410 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.4e-22
                 EEEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHH CS
          PH   1 vvkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWika 99 
                 v+k G+L+kkg+++k +wkkrwfvL+   l++yk +    ++++ + ++l+++ +  +     +k+ ++f ++ +     rt++lqa+++ e+++W++a
  CDO71847.1 124 VIKAGYLWKKGERRK-TWKKRWFVLRPAHLAFYKTS---AEYKLLRLLELTDVHSCTP--VVLKKHQNTFGIVSP----VRTFYLQAETQAEMQDWVRA 212
                 6899***********.********************...5555555555555555543..34899*******777....8******************* PP

                 HHHHH CS
          PH 100 iqsai 104
                 i++a+
  CDO71847.1 213 INEAK 217
                 **986 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.6e-07
                 STSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHHHH CS
          PH  66 rkfcfelriverngsrtyllqasseeerkeWikaiqsai 104
                   ++f+++++    +rt+ll+a+seee  +W++ai+++i
  CDO71847.1 375 STHTFKVVTT----KRTLLLCAPSEEEEIKWLSAIRALI 409
                 5688888888....69*******************9987 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   5.7   1.2e-09   2.1e-06       1     104 [.     126     215 ..     126     216 .. 0.74
   2 ?    3.6   0.0     0.048        87      71     103 ..     374     406 ..     347     408 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.2e-09
       PH_11   1 vkGylkkkgsk..aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirs..sksddllleistetkifflkgdsneet 95 
                 ++Gyl+kkg++  +Wk+rwf vl++  L +Yk + +                l +     +l+ ++s      k+ +  + i    ++f+l+++++ e+
  CDO71847.1 126 KAGYLWKKGERrkTWKKRWF-VLRPAHLAFYKTSAEYK--------------LLR---LLELTDVHSCTPvvLKKHQNTFGIVSPVRTFYLQAETQAEM 206
                 58*******9999*******.**********9765544..............222...22333333333344455566778888999999999999999 PP

       PH_11  96 eeWvealke 104
                 ++Wv+a+ e
  CDO71847.1 207 QDWVRAINE 215
                 999999987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.048
       PH_11  71 sddllleistetkifflkgdsneeteeWvealk 103
                 ++   +++ t+ +++ l + s+ee  +W+ a++
  CDO71847.1 374 HSTHTFKVVTTKRTLLLCAPSEEEEIKWLSAIR 406
                 45566777888889999999*********9996 PP

>> PH_3  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   1.3e-09   2.3e-06      10     101 ..     121     219 ..     113     222 .. 0.77
   2 ?    4.6   0.0     0.019        33      65      98 ..     374     408 ..     370     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-09
        PH_3  10 gelilkqgivkKr..kglfarkRqllltdgPrLiyvDpekmekkGeIpls...kelkve.vknskkFlihtpkrtyyled.pegnaakWvkaieevkkq 101
                 +e+++k+g+++K+  +  + +kR+++l+     +y    + ++    +l+   ++  v   k +++F i +p rt+yl+  +++++++Wv+ai+e k q
  CDO71847.1 121 DETVIKAGYLWKKgeRRKTWKKRWFVLRPAHLAFYKTSAEYKLLRLLELTdvhSCTPVVlKKHQNTFGIVSPVRTFYLQAeTQAEMQDWVRAINEAKTQ 219
                 79**********9888889*********99444555555555545555542224444441456789*************9678899*********9987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
        PH_3  65 knskkFlihtpkrtyyled.pegnaakWvkaieev 98 
                  + ++F + t krt  l   +e+++ kW  ai ++
  CDO71847.1 374 HSTHTFKVVTTKRTLLLCApSEEEEIKWLSAIRAL 408
                 57899************995567788*****9876 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.3   3.1e-09   5.5e-06       3      89 .]     130     217 ..     128     217 .. 0.80
   2 ?   -3.4   0.0       6.8   1.2e+04      59      85 ..     379     405 ..     374     407 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.1e-09
        PH_8   3 llkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgki...plsla.iisaneekreiiidsGaevWeLkasnekdfqeWvealekak 89 
                 l kk   + + ++kR+FvL  + ++l +y+++ + +l   +    ++ +  +  ++++  + i s ++ + L+a+ ++++q+Wv+a+++ak
  CDO71847.1 130 LWKKG-ERRKTWKKRWFVL--RPAHLAFYKTSAEYKLLRLLeltDVHSCtPVVLKKHQNTFGIVSPVRTFYLQAETQAEMQDWVRAINEAK 217
                 55554.566889*******..99*******999987654440114555546888999999****************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.8
        PH_8  59 iiidsGaevWeLkasnekdfqeWveal 85 
                 + + +  +   L a +e++  +W  a+
  CDO71847.1 379 FKVVTTKRTLLLCAPSEEEEIKWLSAI 405
                 556666667778889999999999887 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.5e-06     0.013      74     141 ..     160     225 ..     145     232 .. 0.78
   2 !    5.5   0.0    0.0077        14      96     131 ..     373     407 ..     360     413 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.5e-06
                 EEEE-SS-EETTSEEEE--SSS-.----EEEEEESSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHT CS
       PH_13  74 qfklYkkpiflnevlvkkpsdksdssekvlklsdidkvitlkaesanersaWvkkikeAsekyietek 141
                 ++kl +  + l +v   +p+  + ++++++ +    +++ l+ae++ e + Wv+ i+eA+ + + t  
  CDO71847.1 160 EYKLLRL-LELTDVHSCTPVVLK-KHQNTFGIVSPVRTFYLQAETQAEMQDWVRAINEAKTQLLSTST 225
                 5555543.445555555565555.789999999999*************************9998765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0077
                 -.----EEEEEESSEEEEEEESSHHHHHHHHHHHHH CS
       PH_13  96 sdssekvlklsdidkvitlkaesanersaWvkkike 131
                 + +s++++k+  +++++ l a+s +e  +W+  i++
  CDO71847.1 373 A-HSTHTFKVVTTKRTLLLCAPSEEEEIKWLSAIRA 407
                 3.67899************************99875 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.9   2.7e-05     0.049      60     115 ..     160     214 ..     122     216 .. 0.73
   2 ?    2.1   0.0      0.13   2.3e+02      84     114 ..     376     405 ..     361     410 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
        PH_9  60 nakllgkirlhhaLaekasdYkkkshvFrLqtadgaeylfqtsdakevqeWvdtiN 115
                 + kll   +l    ++ +  +kk ++ F +  +  + + +q++++ e+q Wv +iN
  CDO71847.1 160 EYKLLRLLELTDVHSCTPVVLKKHQNTFGIV-SPVRTFYLQAETQAEMQDWVRAIN 214
                 34444455566666777888999******96.55778899***************9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
        PH_9  84 shvFrLqtadgaeylfqtsdakevqeWvdti 114
                  h F++ t + + +l+ +++++e  +W ++i
  CDO71847.1 376 THTFKVVTTK-RTLLLCAPSEEEEIKWLSAI 405
                 6888888765.678888999999999**998 PP

>> Mcp5_PH  Meiotic cell cortex C-terminal pleckstrin homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   1.7    0.0023       4.1      33     117 ..     142     214 ..     119     219 .. 0.70
   2 !    6.4   0.0    0.0051       9.2      86     121 ..     375     410 ..     360     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0023
     Mcp5_PH  33 kryvwihpyertllWsskqPksekakegksksvaiesvlsvedenplpkglkefnksililtpdralkltaetrerhevWltaLs 117
                 kr++ + p + + + +s          ++ k + + ++++v+  + +p  lk+++++  i++p r+  l+aet+   + W+ a++
  CDO71847.1 142 KRWFVLRPAHLAFYKTS----------AEYKLLRLLELTDVH--SCTPVVLKKHQNTFGIVSPVRTFYLQAETQAEMQDWVRAIN 214
                 55555555555555444..........223334455555555..445677788*****************************987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0051
     Mcp5_PH  86 fnksililtpdralkltaetrerhevWltaLsyllh 121
                  +++  ++t++r+l l a+++e    Wl+a++ l++
  CDO71847.1 375 STHTFKVVTTKRTLLLCAPSEEEEIKWLSAIRALIA 410
                 4567899************************99986 PP

>> PH_2  Plant pleckstrin homology-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.008        14      66      99 ..     182     215 ..     155     223 .. 0.84
   2 ?    7.4   0.0     0.003       5.4      65     103 ..     373     411 ..     344     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.008
        PH_2  66 eeryyfglkTaeglvefeckskaekkvWvegikn 99 
                 +++  fg+    ++  ++++ +ae ++Wv +i++
  CDO71847.1 182 KHQNTFGIVSPVRTFYLQAETQAEMQDWVRAINE 215
                 4557899999999******************985 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.003
        PH_2  65 eeeryyfglkTaeglvefeckskaekkvWvegiknlLsl 103
                  + ++ f + T+++++ + + s+ e+ +W+++i+ l+++
  CDO71847.1 373 AHSTHTFKVVTTKRTLLLCAPSEEEEIKWLSAIRALIAR 411
                 356699*****************************9976 PP

>> PH_17  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00073       1.3      25      58 ..     183     214 ..     164     215 .. 0.79
   2 ?    2.2   0.0     0.085   1.5e+02      37      58 ..     385     406 ..     382     407 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00073
       PH_17  25 enrllEihSpDgrealiLRckdeaeAssWfeAih 58 
                  + ++ i Sp    +  L ++++ae ++W  Ai+
  CDO71847.1 183 HQNTFGIVSP--VRTFYLQAETQAEMQDWVRAIN 214
                 6667777777..67899****************7 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.085
       PH_17  37 realiLRckdeaeAssWfeAih 58 
                 + +l+L ++ e+e  +W++Ai 
  CDO71847.1 385 KRTLLLCAPSEEEEIKWLSAIR 406
                 67999999999999******97 PP

>> PH_4  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028      0.49       2      33 ..     127     158 ..     126     178 .. 0.91
   2 ?   -2.6   0.0       2.3   4.1e+03     160     180 ..     194     214 ..     188     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
        PH_4   2 sGvLyqkkkkhsafkkyfvvLipGflllfklf 33 
                  G+L++k ++++++kk+ +vL p +l  +k+ 
  CDO71847.1 127 AGYLWKKGERRKTWKKRWFVLRPAHLAFYKTS 158
                 7****************************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
        PH_4 160 ksivfmarsrqerdlWvlaia 180
                 ++  ++a  ++e   Wv+ai+
  CDO71847.1 194 RTFYLQAETQAEMQDWVRAIN 214
                 55668899999999***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3408.14
//
Query:       CDO71848.1  [L=246]
Description: hypothetical protein BN946_scf184939.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-05   24.6   7.2    3.5e-05   23.8   7.2    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   7.2   1.9e-09   3.5e-05       2      31 ..      39      71 ..      38      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.9e-09
                S-HHHHHCT---ST...SSSS-HHHHHCTHHHC CS
     Zn_clus  2 aCdnCrkkKvKCda...kkPaCsnCkklnleCt 31
                +C +Cr ++ KCd+   + +aC+ C++l+l+C 
  CDO71848.1 39 GCYTCRIRRKKCDEqpnEEGACQTCVRLRLQCL 71
                6*************9877777***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1831.07
//
Query:       CDO71849.1  [L=500]
Description: hypothetical protein BN946_scf184939.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-47  161.7   0.0    3.2e-47  161.2   0.0    1.2  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   1.8e-51   3.2e-47       1     383 [.      68     498 ..      68     499 .. 0.93

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 1.8e-51
  Fungal_trans_2   1 elldyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhl.qskgpkdslereakrykslalkelqealaelsstlsrnekykdi 94 
                     +l+++yl nv p+++   +s  + r+  ++l++++     a + lsa+hl   ++p +s++ +a   ++++l + ++ + +    +         
      CDO71849.1  68 RLIHHYLANVLPIQYLLADS--SIRDFMIKLIQTSSNARDAACMLSALHLrCMRYPAQSWDPNAIFNHVKGLLLDRRTSYTEGDAMA-------- 152
                     589****************9..****************************778888888*************999998777666666........ PP

  Fungal_trans_2  95 LaaiLllcsieissgdvsdwrvhLeaatsliksrggs......kasssslsskarfllrifayldilssttlgrgpsfpseeyekllen...... 177
                         L+ +s   ++g +++w+v+L+ a+  ++s +        ++  +++s+ +rf++   +++d+l+s t+++ p f +++++ + ++      
      CDO71849.1 153 --G-LHIVSSFLFNGGRGEWQVFLDIACQYVQSMLDDpsfygpEDALRRCSESTRFIIKTTMWFDVLASVTTQQVPRFLMTYRRLFGGQgahigd 244
                     ..5.6777777**********************99999*****999**************************************99999998888 PP

  Fungal_trans_2 178 .kkeesdsgldplmGcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdldeterassls............ 259
                         + ++++ p+mGc+n ++l i+eis+La +k+s+ ++ +l+  ++ ++  e+e+ ll  ++++    p ++++  +++l+            
      CDO71849.1 245 pVAGSPEISMLPVMGCENKIVLAIAEISNLACWKESQLQRGTLSIPELVRRGAEIEESLLMPSSPQPLAVPLQPGMYGPQALQhqmspvyshhhh 339
                     767777777999************************************************9999999999************************* PP

  Fungal_trans_2 260 ....................kdl.telfrlaaliylyrlvlglppsspevqelvkkllellellp........sspvaiasLlWplFiaGceavd 325
                                         + l   +fr++a +yl+++++g  p +p +  +v++ +e+l+++p          +v ++s+++ ++i Gc   d
      CDO71849.1 340 hmggpagadtgltesevaarRRLtNDIFRASAKVYLHTVLSGDFPACPDIIAAVTETIEALQRVPmpgqaptlHRSV-VRSVVFGICISGCLTDD 433
                     **************9999886666889*******************************************9876666.9**************** PP

  Fungal_trans_2 326 eddRdfvrrrleeleqsrlgnvrrarqvleevWrrrddgee.......kidWrdvmekkgwelll 383
                     + +R+f++++le+ +q ++gn+++++++++evWrrrd + +        +dWr+vm + +++lll
      CDO71849.1 434 RGQRSFLLQMLERQQQESVGNIGEVKRLMQEVWRRRDAERHehgnyykPVDWRSVMLESNRDLLL 498
                     ***************8888******************54446688999********999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3621.60
//
Query:       CDO71850.1  [L=783]
Description: hypothetical protein BN946_scf184939.g74, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-34  118.6   0.0    4.9e-34  117.8   0.0    1.4  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   2.7e-38   4.9e-34       2     383 ..     288     781 ..     287     782 .. 0.85

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.7e-38
  Fungal_trans_2   2 lldyyldnvapllspvpessnpfrkvllplalsnk..allhallalsafhl...........qskgpkdslereakrykslalkelqealaelss 83 
                     +++yy+++v  l++++  +     ++l+p+ +++   ++  +l+al+a+h             + +p++  +  +++++++al +l +a ++  +
      CDO71850.1 288 YISYYFKHVRELQFVFLGE--ALTNILYPIVQADHngPVALSLCALAALHHarakmarspdiPAEDPDS-EQAPSRQFYDRALYRLVHAPQTNGT 379
                     789***************9..99999***99988888**************555555555554444444.5899999999999999888554444 PP

  Fungal_trans_2  84 tlsrnekykdiLaaiLllcsieissgdvsdwrvhLeaatsliksrggs..........................kasssslsskarfllrifayl 152
                            + d +aa + l+s+    g   dw   Le a++++++ g+                              ++++ + +  + +  +y+
      CDO71850.1 380 GQ---YADSDAVAA-IQLVSYSTLGGGTMDWTRPLEVACEWLAQTGIYneenpklmlfgmspagrfaakatmvrGNLAPRRARLMVACFESHQYI 470
                     44...588888888.79*******************************888887777777766666666655554444555556666666669** PP

  Fungal_trans_2 153 dilssttlgrgpsfpseeyekllen............kkeesdsgldplmGcsnslilliseisrLarekrsarkdseleplsileeaseleqrl 235
                     d+lss+tl++ p f s + + + ++            + ++ + ++d l+Gc+++ +l i+eis+La +k s+ ++ +l+ +++ ++ + +e++l
      CDO71850.1 471 DVLSSITLKQPPRFLSLYKRLFSGGagfwantasprtSGQHAELRMDALTGCPDEALLAIAEISALAHWKASELQSGSLSVRELIRRGDIIEKEL 565
                     *********7777766666666666******99888777788888************************************************** PP

  Fungal_trans_2 236 lswkprssdlepdldeterassls.......................................kdl.telfrlaaliylyrlvlglpps...... 284
                     ++ +   ++++ d d+ +++                                           k++  e fr +a +yl++++++ +p       
      CDO71850.1 566 RERATGARPCSADGDDGNFPGGGAggldmgvapaglpmamglpqvqpgmsgasrsprapidntKHViGEMFRESAVLYLHTVLSDSSPGasaylp 660
                     *888888999888888888877779*************************************76669****************888888888888 PP

  Fungal_trans_2 285 ................spevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrr.leeleqsrlgnvrrarqvleevWrrrd 362
                                      pe++ +v++++ ll++l +s   +++Ll plF aG+++ +   R++v++r + +   +++gnv  a  v+e+vW +rd
      CDO71850.1 661 pshhtmltdvfrassgVPEISTSVDQMMRLLNELTPSVY-DRGLLLPLFLAGAMSNNQMMREVVKHRfFMQD--ATMGNVLLAQTVMEQVWIERD 752
                     8899999999***999********************999.**************************945555..59******************* PP

  Fungal_trans_2 363 dgee...........kidWrdvmekkgwelll 383
                     +                dWrd + ++ w  ll
      CDO71850.1 753 S--ImrgmrpgrpatFGDWRDHL-RMEWASLL 781
                     4..133556667788999*****.99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5635.93
//
Query:       CDO71851.1  [L=608]
Description: hypothetical protein BN946_scf184939.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-22   79.1   0.0    9.3e-19   68.0   0.0    2.2  2  DnaJ_C        DnaJ C terminal domain
    6.2e-14   51.9   0.8    6.2e-14   51.9   0.8    1.8  2  DnaJ          DnaJ domain
  ------ inclusion threshold ------
      0.012   14.2   1.9      0.022   13.3   1.9    1.5  1  Herpes_UL25   Herpesvirus UL25 family
       0.85    8.8   5.4        1.3    8.2   5.4    1.4  1  Zip           ZIP Zinc transporter
        9.1    4.9   6.7         14    4.4   6.7    1.2  1  Presenilin    Presenilin


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.6e-22   9.3e-19       4      97 ..     355     469 ..     353     486 .. 0.92
   2 !    9.0   0.0    0.0004       1.4     114     148 .]     549     585 ..     522     585 .. 0.78

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 2.6e-22
                 EEEE-HHHHHH-.EEE.EEEE...........................TEEEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   4 eleisleelykGktkkikikrnvi....................kkekktlevkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgn 81 
                 +l+++le+ly+G+ ++ +i+r+ +                    ++++ +++v++ +G+ +g++ir++  G++++ g   D+++++ ++php+F rkg+
  CDO71851.1 355 PLHLTLEDLYFGTVHRYRITRTLRsspsavtpranssptagtgeRRQTVQIDVRVAPGWTTGTRIRVPRVGNQRPdGSFQDIVFVVAEAPHPRFVRKGD 453
                 689******************988******************96666669************************************************* PP

                 EEEEEEEEEHHHHHHT CS
                 xxxxxxxxxxxxxxxx RF
      DnaJ_C  82 dlyveveislaeallG 97 
                 dl+v v+++ ++a + 
  CDO71851.1 454 DLVVPVQVPWMDAHTR 469
                 *****99****99876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0004
                 --TT-EEEETT-S-EET.....TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
      DnaJ_C 114 tqpgevlrikgkGmpklk..kpgkrGdlyvevkvefP 148
                 ++  +  ri+g Gmp+ k     + Gd++++++ +fP
  CDO71851.1 549 VEAADGTRIYGAGMPIRKngCVVGMGDMVIRWEFVFP 585
                 67778889*********95556799**********99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.8   1.7e-17   6.2e-14       3      60 ..     132     191 ..     130     193 .. 0.89
   2 ?   -4.7   1.0         5   1.8e+04      29      39 ..     231     241 ..     230     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1.7e-17
                 HHHHTSSTT.G-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHH CS
        DnaJ   3 YeiLgvskd.asedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRk 60 
                  e Lg+s    +ed +++aY+klal++HPD+++ dp ea++kF e+n+Ay+ L ++ k++
  CDO71851.1 132 LETLGLSAAdLNEDAVRSAYKKLALRWHPDRHNADPeEAKQKFIEVNDAYKALVEECKKR 191
                 578999876369999*****************99999****************9998887 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 5
                 STTTSCCHHHH CS
        DnaJ  29 HPDknpkdpea 39 
                 HP k+++++e 
  CDO71851.1 231 HPAKHSDSREH 241
                 99999776655 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.9   6.2e-06     0.022      31     145 ..     126     250 ..     104     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-06
                  XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXX.XXXXXXXXXXXXXX-- CS
  Herpes_UL25  31 llreealea...sreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiael......eaaaaaeeaaaar.pplspssaspltavas 118
                  + re+ le+   s+++++++ v+ ++ + +L+    ++ a +ee++++  ev+++ ++++e       ++ ++ +  +++r p      +s+++  +s
   CDO71851.1 126 TEREKYLETlglSAADLNEDAVRSAYKKLALRWHPDRHNADPEEAKQKFIEVNDAYKALVEEckkrnkRKLWHRDTTSSQRrPFWASATPSAGSSSSS 223
                  233333333555689*************************************9999999998899999999999999999954455566778888888 PP

                  EE................E-SSTTS-- CS
  Herpes_UL25 119 aeevgkgkesrddeiagevaIvknDpv 145
                  ++++g+ + ++++++    + +++D+ 
   CDO71851.1 224 KASCGTEHPAKHSDSREHDQASRGDSK 250
                  888999999999988887777777775 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.4   0.00036       1.3     103     163 ..     243     306 ..     184     396 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00036
         Zip 103 ksshkektpkkasssssesaakksvsndkve.eseekedhvaeadtdads..keelrngkqeks 163
                 + s+++  p+ +s++++++++++  ++++ +  s+e++dh ++++ d+ds  +++ ++g+ +++
  CDO71851.1 243 QASRGDSKPSRKSDHENTPHPASPKHAHTRPkASSENRDHRHHHHRDRDSdsDSSSAAGSAHTH 306
                 2233333333333333333333333333322022333333333333333300333333333333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.7    0.0038        14     234     316 ..     215     297 ..     180     341 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0038
  Presenilin 234 eseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeese 316
                 +s+ +++++k++  +++  k+++s+e+ + +++ s+ s+++++e++ + +s +++++++k+s+e+++++++++++++++++s+
  CDO71851.1 215 PSAGSSSSSKASCGTEHPAKHSDSREHDQASRGDSKPSRKSDHENTPHPASPKHAHTRPKASSENRDHRHHHHRDRDSDSDSS 297
                 33332222222222222222222222222222222222222333333333333333333333444444433333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4042.61
//
Query:       CDO71852.1  [L=362]
Description: hypothetical protein BN946_scf184939.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-07   29.5   0.2      1e-06   28.8   0.2    1.3  1  NAD_binding_10  NAD(P)H-binding
    0.00019   21.0   0.2      0.011   15.2   0.0    2.4  2  Epimerase       NAD dependent epimerase/dehydratase family
    0.00067   19.3   0.1     0.0011   18.5   0.1    1.3  1  NmrA            NmrA-like family
  ------ inclusion threshold ------
       0.11   13.0   1.3       0.27   11.7   1.3    1.7  1  Rnk_N           Rnk N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2   2.3e-10     1e-06       7      87 ..      31     108 ..      29     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.3e-10
                     HHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHH CS
  NAD_binding_10   7 GrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaake 87 
                       +lv++  a++ +++tal+R pek++ ++++ g++vveg+  d + l++  ++ad+V+  + +++    +a ++++ +k+
      CDO71852.1  31 STRLVQHPNAAS-FNITALIRAPEKAKFVRQNFGVNVVEGSNADLDRLTQLAEQADIVLNVADSDDL--AAASALIQGLKN 108
                     567777777885.**********************************************99987654..455555555543 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2      0.01        47      14      74 ..      34      93 ..      10     104 .. 0.73
   2 !   15.2   0.0   2.5e-06     0.011     150     229 ..     164     250 ..     157     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.01
                HHHHHHHCTSEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE--S- CS
   Epimerase 14 lvkallekgyevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihlAav 74
                lv++ +++  ++++l r +++ ++ r++   ++ve+   d ++l++l +  q+d+v+++A  
  CDO71852.1 34 LVQHPNAASFNITALIRAPEKAKFVRQNFGvNVVEGSNADLDRLTQLAE--QADIVLNVADS 93
                44555555566777777777777666543379**************999..9******9864 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHT........TSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 150 eklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkile........gkqevtllgdgtalRdflyveDvaeaillvlehv 229
                 + +v ++ +++ ++ +i+ + +++G + g+ ++s+++ +   +i +        g+    ++g+g++ + +++++Dvae ++ +l++v
  CDO71852.1 164 DLVVINADRKGWVRGLIISPPTIFGMGSGPLFDSGLVNKHSLQIPLliktslarGR-GAGMVGEGKSIWNHVHIDDVAESYIVLLDAV 250
                 5667778888889999999********99999999988888888887777777655.99**********************9999875 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.5e-07    0.0011       1      88 [.      10     105 ..      10     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.5e-07
                 EEESSTTS...........HHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHH CS
        NmrA   1 IlviGaTG...........rqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdA 88 
                 Il++GaTG           r+   +v++  +a +++ al+R +++ +    ++ Gv++v+g+  d + l ++ +++d v  v    s+ ++  ++l++ 
  CDO71852.1  10 ILITGATGsypslylilrvRISTRLVQHPNAASFNITALIRAPEKAKFVR-QNFGVNVVEGSNADLDRLTQLAEQADIVLNVAD--SDDLAAASALIQG 105
                 6667777722222222111344455555566************9887765.89**************************99999..8877777777765 PP

>> Rnk_N  Rnk N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3     6e-05      0.27       6      31 ..      70     102 ..      70     104 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
                 EHHHHHHHHHHHHCT......TTT.SSTTHHHH CS
       Rnk_N   6 telDleRLeaLldsl......adr.dppaaeaL 31 
                 +++Dl+RL +L++++      ad  d +aa aL
  CDO71852.1  70 SNADLDRLTQLAEQAdivlnvADSdDLAAASAL 102
                 789**********99888777433366666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2753.56
//
Query:       CDO71853.1  [L=1150]
Description: hypothetical protein BN946_scf184939.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.019   14.8   0.0       0.04   13.8   0.0    1.5  1  NAD_binding_10  NAD(P)H-binding
       0.48   10.6   7.2          1    9.6   7.2    1.5  1  AP3D1           AP-3 complex subunit delta-1


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.5e-06      0.04      19      69 ..     435     495 ..     422     544 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.5e-06
                     T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-..........- CS
  NAD_binding_10  19 ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal..........g 69 
                     ++e tal+R+ e ++ ++++ g++vveg+  d e+l+e  + ad+V+  +          +
      CDO71853.1 435 NIENTALIRSFETAKFVQERFGVNVVEGSNADLEKLTELAARADIVLNIVrvyrgspqrlS 495
                     6899***********99999**************************988766664444441 PP

>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.2   0.00011         1      86     119 ..     815     848 ..     806     864 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
       AP3D1  86 kkkkkkkkkkkkkkkkkkkkkkeeesseseeddk 119
                 +k++kkk+k kkkkk++++k+++  +s++eed++
  CDO71853.1 815 DKQAKKKGKTKKKKKQNSRKRARGMDSDEEEDEN 848
                 4455555555555555566666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.42
# Mc/sec: 8177.84
//
Query:       CDO71854.1  [L=190]
Description: hypothetical protein BN946_scf184939.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-34  117.8   0.0    4.2e-34  117.4   0.0    1.1  1  DDE_3     DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.012   15.8   0.0       0.05   13.8   0.0    1.9  2  rve       Integrase core domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   4.7e-38   4.2e-34       1     140 [.      11     152 ..      11     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 4.7e-38
       DDE_3   1 rvvfiDEsgfqlgt.vrrrawakkGkrer.leeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlle...talqakkivlilDnasiHkse 94 
                 ++vf+DE++++ +t +r ++wa+ G+r+   e  +r++r +++ al+ +g++a+ +fe +l+ae+f  f+e +l+   +++q  + vl++Dn siH++e
  CDO71854.1  11 QLVFVDETHLNRETtRRMYGWAQCGRRAHrREFFIRGQRYSILPALSLDGIIALDVFETSLTAEKFTLFIEMVLDcmnPFPQR-NSVLVMDNPSIHHAE 108
                 68***********99999*********777****************************************9766511167776.*************** PP

       DDE_3  95 slrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfk 140
                  lrelve+   +++l+ylP+ySP+lNpiE+ +s++k++++++r + 
  CDO71854.1 109 GLRELVEA--RGMRLEYLPTYSPDLNPIEEAFSSIKAWIRSNRDYA 152
                 ********..*******************************98775 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.16   1.5e+03       3      18 ..       8      23 ..       6      53 .. 0.77
   2 ?   13.8   0.0   5.5e-06      0.05      45     111 ..      74     138 ..      61     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.16
         rve  3 rpgelwqvDvtvvrip 18
                +p +l+ vD t+++  
  CDO71854.1  8 QPEQLVFVDETHLNRE 23
                7888999999988733 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.5e-06
         rve  45 emdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErf 111
                 e + ++ ++++   +  f ++   ++++Dn s   ++ +re+++  g+r+++ + ++p+ n + E f
  CDO71854.1  74 E-KFTLFIEMVLDCMNPFPQR-NSVLVMDNPSIHHAEGLRELVEARGMRLEYLPTYSPDLNPIEEAF 138
                 4.6677788888888889998.799*******99999************************986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1411.44
//
Query:       CDO71855.1  [L=618]
Description: hypothetical protein BN946_scf184940.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-13   49.3   0.0    6.8e-13   48.2   0.0    1.5  1  Fungal_trans  Fungal specific transcription factor domain
    1.9e-07   31.1  16.4    3.3e-07   30.3  16.4    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.015   15.2   0.1    1.8  2  FlxA          FlxA-like protein
       0.12   11.9   0.1        0.3   10.7   0.1    1.6  1  HTH_47        winged helix-turn-helix


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.5e-16   6.8e-13       1     179 [.     202     389 ..     202     397 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.5e-16
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   ld+ff + h++   +h   f         +++ + +p l+ ai+ l+++fs+s+t +   ++  +         r    i e ++ +++ +++lq+ 
    CDO71855.1 202 LDIFFAHRHQCSFDVHVGRFKAAL---LLPSAHKPHPSLVDAIYLLACYFSRSPTLTALEPHFLK---------RSLRGIAEALKNSDRIIHVLQAS 286
                   567777766444456666666666...67777899999*******************84444443.........4444456789999999******* PP

  Fungal_trans  98 lllelyektssdralherhhgvavrlarslgLhrnpsyvgkks......................lwklweeeaesrrRlwwaaFylDktialklGr 172
                    ll++y ++ +++   ++h+++a rla+ lgLh+  s+    +                       + ++e e  +r   +w +F++D+ +a+ +G 
    CDO71855.1 287 CLLAMYFFWHGRTLEGYYHSSIAARLAVGLGLHQIRSNDWF-QfqlvragypqdapaplkasvplKPPVDEVEYAERIAAFWQIFSVDRAWAVATGL 382
                   *********************************87665442.257******************664455555455566679**************** PP

  Fungal_trans 173 pplldds 179
                   p+ l+d+
    CDO71855.1 383 PTALPDD 389
                   **55665 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3  16.4   7.5e-11   3.3e-07       2      37 ..      12      49 ..      11      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 7.5e-11
                S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfysess 37
                aC  Crk+K KCd+ +P+Cs+C k n  +eC++y++++
  CDO71855.1 12 ACLCCRKRKMKCDGARPVCSQCSKANrsSECEYYEKKR 49
                9*******************************777765 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   3.5e-06     0.015      47      84 ..      47      86 ..      32     100 .. 0.80
   2 ?   -2.6   0.2       1.3   5.7e+03      51      68 ..     574     591 ..     572     592 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.5e-06
        FlxA 47 kk..kqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsek 84
                kk   + ql+qa+I++l+a ++ l+++q+ + +++++s+ 
  CDO71855.1 47 KKrtSRTQLLQAKITKLEARLRELEAEQSPEPSSSSASQS 86
                3334899**********************99988887765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
        FlxA  51 qqliqaQIqqlqaQIaql 68 
                 ++li+++I+ l a +++l
  CDO71855.1 574 AELIEQEIDTLIAAMQRL 591
                 578999999998877765 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   6.7e-05       0.3      31      71 ..     552     592 ..     545     594 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.7e-05
                 --HHHHHHHHHH-EEEEEHHHHHHHHT--HHHHHHHHHHHH CS
      HTH_47  31 qaemallwvLnlaDGkrsLldiAeriglpfdrvaaiaraLa 71 
                 +a++ ++ +L+++ G   L  +Ae i+ ++d+++a++++L+
  CDO71855.1 552 SAAEVYMRILAMSHGPSALGSTAELIEQEIDTLIAAMQRLN 592
                 556789********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4218.26
//
Query:       CDO71856.1  [L=265]
Description: hypothetical protein BN946_scf184940.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.3e-58  194.6   0.0    1.2e-57  194.2   0.0    1.1  1  ADK          Adenylate kinase
    4.2e-21   75.8   0.1    9.1e-21   74.7   0.0    1.6  2  AAA_17       AAA domain
    9.8e-18   63.8   0.0    1.8e-17   63.0   0.0    1.5  1  ADK_lid      Adenylate kinase, active site lid
    0.00079   20.0   0.0     0.0087   16.6   0.0    2.2  2  AAA_18       AAA domain
     0.0097   16.1   0.0       0.02   15.1   0.0    1.5  1  AAA_33       AAA domain
  ------ inclusion threshold ------
       0.11   12.8   0.1       0.32   11.3   0.1    1.9  1  RILP         Rab interacting lysosomal protein
       0.12   12.3   0.0       0.19   11.6   0.0    1.4  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.0   4.8e-61   1.2e-57       1     150 [.      46     232 ..      46     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 4.8e-61
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCH.GTTTEEEEESB-SSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeeleke.dkkkgfllDGfPRtveqaealeellee 98 
                 l+G+PgaGKGtqa+++ ++++++hl+tGdllR++v+++t+lG eak++md+g lv+d++vv+++k++le++ ++k+gf+lDGfPRtv+qa++l+++le 
  CDO71856.1  46 LIGPPGAGKGTQAPRIRDEFCVCHLATGDLLREQVARKTKLGVEAKKIMDAGGLVSDDIVVGMIKDQLENNkACKNGFVLDGFPRTVPQASMLDAMLEA 144
                 79*******************************************************************9999************************** PP

                 HTSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  99 ekvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkkg 150
                 +k kld  ++l +++++l++R+tg                                    Dn e+++kRl+++++qt p++dyyk+kg
  CDO71856.1 145 RKEKLDSAVQLVIDDQLLISRITGrlihpasgrtyhrefnppkkpmvddvtgeplvqrsdDNVEALRKRLAVFHSQTGPVVDYYKQKG 232
                 *************************************************************************************997 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   3.5e-24   9.1e-21       1     127 [.      47     177 ..      47     182 .. 0.85
   2 ?   -3.2   0.0         4     1e+04     126     136 .]     201     211 ..     194     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 3.5e-24
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEEEETTEEEESSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaekiaeea.kkkgvlvdghprikeqagfldglpkev 96 
                 +G+PG+GKgtq+ ++ +++ + hl +Gdllre ++r+ +l ++a++ m+ + l+ ++ +  ++++++++++ +k+g+++dg+pr+  qa +ld + +  
  CDO71856.1  47 IGPPGAGKGTQAPRIRDEFCVCHLATGDLLREQVARKtKLgVEAKKIMDAGGLVSDDIVVGMIKDQLENNKaCKNGFVLDGFPRTVPQASMLDAMLEAR 145
                 69*****************************887777467789999999******************99876999**********************99 PP

                 HHHH..SEEEEEE--HHHHHHHHHHH...TTST- CS
      AAA_17  97 leelkpdaiilleadpeeilerrlkd...rtrgr 127
                 +e+l  d  + l +d++ +++r   +     +gr
  CDO71856.1 146 KEKL--DSAVQLVIDDQLLISRITGRlihPASGR 177
                 9999..6666666777777777665543235666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
                 T-TS-SHHHHH CS
      AAA_17 126 grdddneesik 136
                 +r+ddn e ++
  CDO71856.1 201 QRSDDNVEALR 211
                 69999999886 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   7.2e-21   1.8e-17       1      36 []     169     204 ..     169     204 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 7.2e-21
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 R+++p++Gr+Yh++fnpPk+++++D++GepLvqRsD
  CDO71856.1 169 RLIHPASGRTYHREFNPPKKPMVDDVTGEPLVQRSD 204
                 99**********99*********************9 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.4e-06    0.0087       2     115 ..      45     171 ..      45     183 .. 0.74
   2 ?    0.5   0.0      0.34   8.6e+02      16      60 ..     208     254 ..     207     263 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakd 93 
                 +l G+pG+GK t a +++++  +            +va++  l  e  + +    ++ d+ ++  + d+le+n +     +  v+dg++    ++++ d
  CDO71856.1  45 ILIGPPGAGKGTQAPRIRDEF-CvchlatgDLLREQVARKTKLGVEAKKIMDAGGLVSDDIVVGMIKDQLENNKA---CKNGFVLDGFPRTVPQASMLD 139
                 689**************9996.24556663333334555555555555545566666666666667777777654...34455******9999999999 PP

      AAA_18  94 ikk..........vvLtaspeelleRlekRgy 115
                 +            v L  +++ l+ R+  R  
  CDO71856.1 140 AMLearkekldsaVQLVIDDQLLISRITGRLI 171
                 99899999******************999975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.34
      AAA_18  16 keLskrlgf....gvnlrdvakenglllevdpealdeskrldedkldkl 60 
                 ++L+krl++       + d+ k++g+ ++vd++  ++ + + e+ +++l
  CDO71856.1 208 EALRKRLAVfhsqTGPVVDYYKQKGIWYPVDAA--QSPNLVWENLRNVL 254
                 678999855698889999999*******99999..54444455554444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.8e-06      0.02       3     118 ..      45     169 ..      44     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.8e-06
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrr.rlfg.....tdqqsktdytr.vldr.lyqilnelarkalsagrnvildatnlsrrerarflklar 93 
                 +l+G+pG+GK t a r+  +  +++l++ +l+r +++       + +++ d    v+d+ + +++++ ++ + + +++++ld   ++  + + ++++++
  CDO71856.1  45 ILIGPPGAGKGTQAPRIRDEFCVCHLATGDLLReQVARktklgVEAKKIMDAGGlVSDDiVVGMIKDQLENNKACKNGFVLDGFPRTVPQASMLDAMLE 143
                 79***************9888888888777666244434332222222222222344445777888888888888888999877777777766666665 PP

      AAA_33  94 .rlgvpvrivvvetdeetlkeRlakR 118
                  r +  +++v +  d+++l +R+  R
  CDO71856.1 144 aRKEKLDSAVQLVIDDQLLISRITGR 169
                 33344578888888888888888887 PP

>> RILP  Rab interacting lysosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00012      0.32      21      57 ..       2      38 ..       1      40 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
        RILP 21 llqEELayYkseeleeernsselreekkspvtsprnk 57
                 +q+EL+y+ks   + + + + l+ ++k +v++p++ 
  CDO71856.1  2 TVQDELEYLKSLVTQLNDKIQALEAKAKDAVSQPKTP 38
                69***********999999999999999999999876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05      0.19      63     122 ..       5      64 ..       1     103 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
                  HHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  63 eeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  +ele lk+ +++l+ ++ +++ak k+++++ k+  ++  ++l+G+ G+GK t   +++ e
   CDO71856.1   5 DELEYLKSLVTQLNDKIQALEAKAKDAVSQPKTPAQQLRTILIGPPGAGKGTQAPRIRDE 64 
                  4588899999*****************************************988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      886  (0.0494171); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1896.32
//
Query:       CDO71857.1  [L=139]
Description: hypothetical protein BN946_scf184940.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-54  181.5   3.1    5.5e-54  181.3   3.1    1.0  1  Cerato-platanin  Cerato-platanin


Domain annotation for each model (and alignments):
>> Cerato-platanin  Cerato-platanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   3.1   3.1e-58   5.5e-54       1     119 []      21     139 .]      21     139 .] 0.99

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 3.1e-58
  Cerato-platanin   1 vsvsydtgyddanrsltvvscsdGsnGlitkywptqgavknfpriGGlsaiagwnsancGtcykityngktiyvlaidaagaGfniakkamdel 94 
                      v+vsyd+ yd+++ sl++v+csdGsnGl+tk ++t g+++ fp iGG+ aiagwnsa+cGtc+k+tyngk+i+vlaid+a++Gfnia +am+ l
       CDO71857.1  21 VTVSYDQTYDNSSGSLSTVACSDGSNGLLTKGYSTLGSLPHFPNIGGAAAIAGWNSAQCGTCWKLTYNGKSINVLAIDHAQSGFNIALEAMNTL 114
                      69******************************************************************************************** PP

  Cerato-platanin  95 tngqaaelGrvdaeveevalsdcgl 119
                      t+gqa++lGr+da+ ++va+s+cgl
       CDO71857.1 115 TGGQAVQLGRIDATATQVAASQCGL 139
                      ***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1042.67
//
Query:       CDO71858.1  [L=445]
Description: hypothetical protein BN946_scf184940.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-134  447.7   0.0   4.4e-134  447.4   0.0    1.0  1  DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta


Domain annotation for each model (and alignments):
>> DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.4   0.0  2.5e-138  4.4e-134       1     414 [.      28     437 ..      28     438 .. 0.93

  Alignments for each domain:
  == domain 1  score: 447.4 bits;  conditional E-value: 2.5e-138
  DDOST_48kD   1 vLvvldseaekeeyskflksLeergfeltfksakdeslsLfkygerkYdhlillapkvkelgksltpkallefvnkggniLvalsssklpesirsllse 99 
                 vLv++d + +++++s f+ +Le++g++ltf+s+k+++ +++k +  ++ h+i++ap++k++++++tp++l+ ++n+++ +L+alss++  ++++sl++e
  CDO71858.1  28 VLVLMDPSLNRDNFSVFFGDLENQGYKLTFRSPKATEPQIIKDDVAQFAHVIIFAPDTKSYASDITPQSLVALLNQNTSLLLALSSKQ--TPLTSLAAE 124
                 79**********************************************************************************9975..********* PP

  DDOST_48kD 100 lgielsergskvvDhfnydsesdaekhdvlllsspeellakvknifsekkkeeevlfrgvgallgnnplllpiLrapstsysydpkeeeesaeea.... 194
                 +++ l++ g+ +++hf ++++      +v+ +++p+     +++++s  ++  +v+f+g+ ++lg np+l+p+L+ap +s++ d ++++ +        
  CDO71858.1 125 FSLILPPPGTPLISHFPQRDTP----ATVIPVEPPR-----SNVVLS--QNLPPVWFSGIPQALGLNPMLVPLLKAPPQSFASDADSDSGADA-Lveaa 211
                 *****************98643....4577777776.....333455..57889*****************************9988777555.23556 PP

  DDOST_48kD 195 ......favGsqlslvaalQarnnaRvvfvGslellsdeffdakvkkkeksgnrefakdltkWtfqekgvlrvksvehhkeeeeeenpeiYrikdevtY 287
                       + +Gsqlslv+++Q++nn R+++vG++++++deff+++v++ + sgnr+fa+d+t+Wtfqe++vlr+++vehh+++ e+ ++e+Y+i+d vtY
  CDO71858.1 212 ekggegLWAGSQLSLVTGFQSLNNGRITWVGGVDMFTDEFFNKEVAEGKPSGNRQFARDVTAWTFQESNVLRIDNVEHHRVN-ETLPREKYTINDRVTY 309
                 677776779*************************************************************************.9*************** PP

  DDOST_48kD 288 sielseysndk..wvPfea.ddlqLefvmLdPyirltLkpkkssedatvYstkfklPDrhGvFkFkvdYkRpgltyieekttvsvrhlahdeypRfiss 383
                 s  +s+y+ +   w+P++  +d+qLef+mLdP+ir++L+p+    + + Ys++f++PDrhGvFkF+vdYkR+glty++++t+v+v++ +hdeypRf+s+
  CDO71858.1 310 SAYISKYDPELdlWEPYSGiQDMQLEFTMLDPHIRTALSPVP--GEPGKYSVTFRVPDRHGVFKFVVDYKRKGLTYLKSTTVVPVVPPRHDEYPRFLSA 406
                 *******999557*****99********************97..46799************************************************** PP

  DDOST_48kD 384 AwpYyasafsvvvgfllFvalflyskeekkk 414
                 AwpYy++afs++v+f++Fval+l  +e+++k
  CDO71858.1 407 AWPYYVGAFSTSVAFVVFVALWLGGEEREPK 437
                 ***********************98887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3097.49
//
Query:       CDO71859.1  [L=714]
Description: hypothetical protein BN946_scf184940.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-17   61.8   0.0    9.4e-17   61.2   0.0    1.3  1  DDE_1        DDE superfamily endonuclease
    0.00044   20.2   0.0     0.0012   18.8   0.0    1.8  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
     0.0013   18.4   0.1     0.0029   17.3   0.1    1.7  1  HTH_psq      helix-turn-helix, Psq domain
     0.0015   18.3   0.4     0.0055   16.5   0.1    2.1  2  DDE_3        DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.1e-20   9.4e-17       4     134 ..     235     367 ..     232     403 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.1e-20
       DDE_1   4 ltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWL.kvfdkrle...aekrkilLlldssrshetvel.lesel 97 
                 l ++++++ a++  ++p  i+ +k+     +   ++    v +  +r++w+ + +  eW+ + f+++ +     +  ilL+ld+++ h t e+ +   +
  CDO71859.1 235 LITIIECVCADGSSIQPGFIFAGKEFSRDLF---HDIDPRVCIALSRTGWTAEYLCLEWFkRCFIPQANahrVSDAPILLILDGHNLHITPEMrQAAIE 330
                 5578999******************999988...99999*****************************999888999****************99999* PP

       DDE_1  98 qniklvflPassasllqPldqgvvselKarYrrqllq 134
                 +ni+l+ lP+++++ lqPld++++++l + + ++ ++
  CDO71859.1 331 NNIHLFLLPPHTTHHLQPLDVSIFAALEHAWQIHCNK 367
                 ***************************9999998876 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07    0.0012       1      47 [.     114     157 ..     114     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.7e-07
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfk 47 
                  +pe+E+aL++Wi++l  +g+p+   ++r++ q++   +  +++p+ +
   CDO71859.1 114 TPEEEDALCDWIEHLSLEGAPVDKDTVRDMVQAV---TGSETPPNRR 157
                  69****************************9999...4555566655 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.6e-07    0.0029      17      43 ..      76     102 ..      59     104 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.6e-07
     HTH_psq  17 mSirkAArkYgiPrsTLwrrkrgkysl 43 
                 ++ + AAr + iP +TL+ r++g+ ++
  CDO71859.1  76 LTYAAAARQFSIPETTLRARYKGIHTS 102
                 66677*****************97654 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.95   4.2e+03      60      80 ..     173     193 ..     166     204 .. 0.50
   2 !   16.5   0.1   1.2e-06    0.0055      67     116 ..     295     342 ..     280     379 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.95
       DDE_3  60 naedfaeflerlletalqakk 80 
                 n ed  ++l++l+e+++ +++
  CDO71859.1 173 NVEDYFKQLRDLIEQYKIPWS 193
                 333333444455555544444 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.2e-06
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpyS 116
                 f+ + + ++ +  +i lilD+++ H   ++r+++ e   +++l+ lPp+ 
  CDO71859.1 295 FIPQANAHRVSDAPILLILDGHNLHITPEMRQAAIE--NNIHLFLLPPHT 342
                 6667777777777********************999..********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 4619.54
//
Query:       CDO71860.1  [L=288]
Description: hypothetical protein BN946_scf184940.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-20   73.8   0.0    1.9e-20   73.4   0.0    1.1  1  NmrA             NmrA-like family
    1.7e-11   44.3   0.2    3.3e-11   43.4   0.1    1.5  2  NAD_binding_10   NAD(P)H-binding
    5.5e-08   33.3   0.0      1e-07   32.4   0.0    1.4  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    4.8e-06   26.9   0.0    6.5e-06   26.4   0.0    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0003   20.9   0.0    0.00052   20.1   0.0    1.3  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
    0.00092   20.0   0.0     0.0017   19.2   0.0    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.033   13.7   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
       0.02   13.8   0.0       0.03   13.3   0.0    1.3  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
      0.055   14.1   0.0       0.17   12.5   0.0    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   9.8e-24   1.9e-20       1     153 [.       7     167 ..       7     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 9.8e-24
                 EEESSTTSHHHHHHHHHHHH...HT-.EEEEEES-S-SHHHHHHHHSTTEEEES-TT-.HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS- CS
        NmrA   1 IlviGaTGrqGksvvrallk...agh.kvralvRdtkselakslkeaGvelvkgdldd.keslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGv 94 
                 ++++G+TGr+G  v +++l+     + +vr+l+Rd+++ +a+ l+e+G+ l   d+++  +sl+ea++g dvv+ +++ +s+  +   +++dAa++ Gv
  CDO71860.1   7 VAIVGGTGRLGYDVSKVFLDefhTSFpTVRVLTRDPSTAKARDLAERGAHLRDFDVENvAQSLAEAFNGIDVVINALP-TSTPKDVKRQVADAAVKNGV 104
                 79******************665344359***********************9999883679***************9.66666777789********* PP

                 SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC....TS-EEEEEE-EEGGG-BSSS- CS
        NmrA  95 khfiySslgddndrsnaeepavphfdsKaeieeyvral....gipytfvyagffmenflslla 153
                 k f+ S++g d+ r + +  ++  +++K +     r+l      +   vy+g+f e  ls++ 
  CDO71860.1 105 KVFFLSEFGVDHTRNDFRGYDHHEWEMKRQLASEARELargtPTQVIAVYTGLFLELCLSKIT 167
                 ********************************9999998833333445788888888877654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   1.7e-14   3.3e-11       1     117 [.      11     129 ..      11     160 .. 0.76
   2 ?   -2.5   0.0         2     4e+03     157     178 ..     194     215 ..     164     217 .. 0.58

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.7e-14
                     TTTSHHHHHHHHHHHHC-T-E....EEEEETTHHHCH..HHHCTTTCEEEE--TT-C.CHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHC CS
  NAD_binding_10   1 GAtGkvGrllvkellargghe....vtalvRnpekla..eleaeeglevvegdvtdv.edlaealkgadaVvsalggggkdeegaknivdaakea 88 
                     G+tG+ G  + k  l++  h+    v++l+R+p+ ++  +l+ e g+++ + dv++v ++laea++g+d+V+ al ++   +++ ++++daa ++
      CDO71860.1  11 GGTGRLGYDVSKVFLDEF-HTsfptVRVLTRDPSTAKarDLA-ERGAHLRDFDVENVaQSLAEAFNGIDVVINALPTST-PKDVKRQVADAAVKN 102
                     999999999999999995.4334459******9866522675.79***********7478***************7544.5789*********** PP

                     T--EEEEEEETTTTSGCGCHHHHHHHHCC CS
  NAD_binding_10  89 gvkRfvlvsaigvgdevpgefgewnkell 117
                     gvk f l s +gv++ + ++f  ++++ +
      CDO71860.1 103 GVKVFFL-SEFGVDH-TRNDFRGYDHHEW 129
                     **87765.999**96.4555554444333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                     EETTSS----EEEHHHHHHHHH CS
  NAD_binding_10 157 vekgepfkggsisradVAdvlv 178
                     v ++ ++ g++is +dV d+++
      CDO71860.1 194 VPDELRICGTTISFEDVRDWVA 215
                     2344455567777777777666 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   5.1e-11     1e-07       2      97 ..       7     110 ..       6     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.1e-11
                     EEEETTTSHHHHHHHHHHHC..TSSEEEEEEEESTTTTTSBHHHHSG..GGTTTECEBEEEGGGGGCTT-SEEEE-....SCHHHHHHHHHHHHH CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLee..hpevelvvllsssrsaGkklaeavk..aleegkdlkvedvdeeelkevdivfla....lpagvskelapklae 88 
                     vaivG+tG  G ++ ++  +  h ++  v++l+++ s  k+ + a +  +l++    +v +  +e+++++d+v+ a    +p++v +++a+++++
      CDO71860.1   7 VAIVGGTGRLGYDVSKVFLDefHTSFPTVRVLTRDPSTAKARDLAERgaHLRDFDVENVAQSLAEAFNGIDVVINAlptsTPKDVKRQVADAAVK 101
                     9*************99866659999**********95555444443334666666666666788999*******9866667899999999999** PP

                     TTSEEEESS CS
  Semialdhyde_dh  89 agvkviDls 97 
                     +gvkv+ ls
      CDO71860.1 102 NGVKVFFLS 110
                     ****98766 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.3e-09   6.5e-06       2      98 ..       8     108 ..       7     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.3e-09
                      EEE--.SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG....GHHHHHHHH CS
  Sacchrp_dh_NADP   2 liiGa.GsvGqavaellarhfdvda.eitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppi....ssldvlkaC 89 
                       i+G+ G+ G  v ++ +++f+ +  ++ v +r+ +   a a ++++  ++ + +d+en+++ La++ ++ d+v+n++p        ++v++a+
       CDO71860.1   8 AIVGGtGRLGYDVSKVFLDEFHTSFpTVRVLTRDPST--AKARDLAERGAHLRDFDVENVAQSLAEAFNGIDVVINALPTStpkdVKRQVADAA 99 
                      6788889999888888888888755789999999999..5555678889999***************************9989888999***** PP

                      HHHT-EEEE CS
  Sacchrp_dh_NADP  90 ietgvhyvd 98 
                      +++gv +  
       CDO71860.1 100 VKNGVKVFF 108
                      ****99865 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.6e-07   0.00052       2      94 ..       6     106 ..       5     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.6e-07
                 EEEEETTTSHHHHHHHHHHHH..STTEEEEEEEETTCSTTTTTBHHHH.SSSS--S-B.EBSSHHHHHHH-SEEEE-...S-HHHHH.HHHHHHHHTT- CS
      DapB_N   2 kvavvGasGrmGkevvkavee..aedlelvaavdrkeselegkdagel.lglgklgva.vtddleevlekadvliDF...Ttpeavl.enlklalekgv 92 
                 +va+vG +Gr+G  v k+  +  ++++  v ++ r++s+++++d+ e  ++l+  +v+ v ++l+e+++  dv+i     +tp+ v+ +++++a+++gv
  CDO71860.1   6 SVAIVGGTGRLGYDVSKVFLDefHTSFPTVRVLTRDPSTAKARDLAERgAHLRDFDVEnVAQSLAEAFNGIDVVINAlptSTPKDVKrQVADAAVKNGV 104
                 69****************99944589999***************98752555577776255899999999*****975555666655145667778787 PP

                 EE CS
      DapB_N  93 kl 94 
                 k+
  CDO71860.1 105 KV 106
                 75 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   8.3e-07    0.0017       3      90 ..       7     107 ..       5     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.3e-07
                   EEEETT.SHHHHHHHHHHHHTTTTE.EEEEEECSSHHHHHHH........HHHTTHE.EESSHHHHHTCTTESEEEE-S-GGG....HHHHHHHHHH CS
  GFO_IDH_MocA   3 vaiiGa.Gkigskhlrplnesqrle.evvalldpdaeraeav........aesfgve.aysdleelladpeidavivatpngt....heelakaale 84 
                   vai+G+ G++g++  + + +++++    v +l +d++ a+a          + f+ve + ++l+e ++   id+vi a p++t     +++a aa++
    CDO71860.1   7 VAIVGGtGRLGYDVSKVFLDEFHTSfPTVRVLTRDPSTAKARdlaergahLRDFDVEnVAQSLAEAFN--GIDVVINALPTSTpkdvKRQVADAAVK 101
                   8899888*******999999999999666666666666555554766655555666656666777777..99999999999555555999******* PP

                   TT-EEE CS
  GFO_IDH_MocA  85 agkhvl 90 
                   +g++v+
    CDO71860.1 102 NGVKVF 107
                   ***998 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.6e-05     0.033       2      87 ..       8      98 ..       7     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.....EEEE--TT-HH.HHHHHHHHHT-SEEEE--S---HHHHHHSHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl.....elveldltdrs.alerlfkeeqpdavihlAavggvaassedpadf 87
                 ++G+tG +G  + k +l++ ++   ++  l+++  ta+ +dl     +l + d+ + + +l+++f+  ++d+vi++   +++++   + ad 
  CDO71860.1  8 AIVGGTGRLGYDVSKVFLDEFHTsFPTVRVLTRDPSTAKARDLaergaHLRDFDVENVAqSLAEAFN--GIDVVINALPTSTPKDVKRQVADA 98
                699*****************96655555555555555555555666999999999997769999999..9******96577766655555555 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05      0.03     134     219 ..      10     106 ..       4     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                      EE--SHHHHHHHHHHCCCS-..-SEEEEE-SSHHHHHH..HHHHCCS..CTT-E.EECSCHHHHTTSSEEEE----SS.....-SB-GGGS-TT CS
  OCD_Mu_crystall 134 iiGaGvqaetqlealkavld..ikevriydrdeeaaek..faenlqe.fefevs.ackseeeavegadivvtvTaaka.....pilkaewvkpG 216
                      + G G+  +   +++  ++   + +vr+  rd+++a++  +ae+  +  +f+v+ +++s +ea +g d+v+ + ++         + +  vk+G
       CDO71860.1  10 VGGTGRLGYDVSKVFLDEFHtsFPTVRVLTRDPSTAKArdLAERGAHlRDFDVEnVAQSLAEAFNGIDVVINALPTSTpkdvkRQVADAAVKNG 103
                      336788888888888887765699*********98876335666665469***7366889***********88777663344556777777777 PP

                      -EE CS
  OCD_Mu_crystall 217 ahi 219
                      + +
       CDO71860.1 104 VKV 106
                      765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.4e-05      0.17       2      87 ..       7     101 ..       6     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.4e-05
                    EEEE.TTSHHHHHHHHHHHHTTS...-GGCEEEEEESSCCCHHHHHHHHC......-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored   2 igii.GaGnmgealasgllaaga...qpheivvansrnpekaeelaeelg......vkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87 
                    ++i+ G+G++g  + + +l +     +   ++ + +++  ka+ lae+        v+  a + +ea +  dvv+ a++++  ++v +++a++a k
     CDO71860.1   7 VAIVgGTGRLGYDVSKVFLDEFHtsfPTVRVL-TRDPSTAKARDLAERGAhlrdfdVENVAQSLAEAFNGIDVVINALPTSTPKDVKRQVADAAVK 101
                    78998999999999998888754744455555.55677778888888877999999666666********************99999999666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2156.75
//
Query:       CDO71861.1  [L=360]
Description: hypothetical protein BN946_scf184940.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-06   26.2   0.0    6.8e-06   25.6   0.0    1.2  1  Terpene_synth_C  Terpene synthase family, metal binding domai


Domain annotation for each model (and alignments):
>> Terpene_synth_C  Terpene synthase family, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.8e-10   6.8e-06     141     258 ..     146     261 ..      82     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.8e-10
  Terpene_synth_C 141 lkeawkelvkaylkeakWreekyvPsfeEylenslvssglpllllaalvgmgdevtkeafewvasypklvkalstilRLlnDiasyereqkrgd 234
                      +  ++ +++++++++a+ r  ++v  ++ yl++    +g+++ ++++ +gm+    +++f    +  +l +++  +l L nDi sy+ eq+rgd
       CDO71861.1 146 FIATFDDYCQSVVEQATDRAIGRVHDVDSYLHMRRENIGAKPSFAILELGMDL--PDDVF-YHPTLVNLSTWAIDMLILGNDICSYNVEQARGD 236
                      4457999****************************************779974..34422.2233445555666788899*************9 PP

  Terpene_synth_C 235 .vassvecymkehgvseeeAveeik 258
                       + ++v++ m++++++++ A++ i+
       CDO71861.1 237 dSHNIVTVVMRQYNTDIQGAMDWIA 261
                      9*******************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2785.76
//
Query:       CDO71862.1  [L=506]
Description: hypothetical protein BN946_scf184940.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-70  236.0   0.0    8.2e-70  235.8   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.8   0.0   4.6e-74   8.2e-70       1     459 [.      24     482 ..      24     486 .. 0.87

  Alignments for each domain:
  == domain 1  score: 235.8 bits;  conditional E-value: 4.6e-74
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkkl 98 
                 Ppgp+ lpl+gn++ql+r   ++ ++++ ++ +gpi+ +kl +++v++l++ +a+  +l k++   s+rp+ + + +  + ++g+  +f+++ e w+++
  CDO71862.1  24 PPGPSGLPLIGNIHQLSR--DVWYKFTEWKRIHGPIVHIKLFGQDVIILNTLKAASDLLDKRAPIYSSRPQFFIVGQ--MLTEGYFFVFQSYgELWRRM 118
                 9***************94..45555**********************************************999999..88*****9999999****** PP

                 HHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHS.SHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH CS
        p450  99 RrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFg.arfdlledeklselvkaveelssllskssvqllllfp 196
                 Rr  + +l+++  +++ ++ + e++ l++ l     +       +++ + a +++   ++g ++ ++ ed+  + l ++++++++       +l+ + p
  CDO71862.1 119 RRAAHESLRNGAVQQFGAIETAETALLLKDLLAAPRQW-----ERHMERTAASTLLAACYGtEPAQSAEDPAMKLLHTFTRQIVQSG-YVDGNLVEYLP 211
                 ***********445999999999999999999888888.....7888888888887777773678999***9999999999998755.66889999999 PP

                 HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC..SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH CS
        p450 197 llkylptkllrklkeavkklkdlldklieerretldsa..kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknP 293
                 +l+ +p+ l    k+a + + ++++ l+e  +++ +++  +  r d + a++ +  ++k   +ls++e a  + + l+a+++T + ++sw  + ++ +P
  CDO71862.1 212 FLRHIPSCLAPWKKAALDWAPKFTR-LFESLYSQSRDRavNGGRLDSITAMMVEN-QEK--YNLSHKETAWLIAT-LAAAYETLAGVMSWWALAMVLYP 305
                 9999998887777777665555554.44444444444447669999999999995.333..36999998766655.7899******************* PP

                 HHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-T CS
        p450 294 evqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFlde 391
                 ++q+k + Eid+v+g++r p+ +dl kl y++a++kE+LR hpv pl+l+++ t+d v +gy+ipkGt++i n++a++rdp+++  +++eF+peR+l+ 
  CDO71862.1 306 DIQKKAQAEIDSVVGRSRLPSVEDLDKLVYVRAMLKEALRWHPVGPLGLQHRSTEDDVYEGYFIPKGTICIANVWAINRDPALWgRDADEFRPERYLES 404
                 *************************************************************************************************** PP

                 TS.....CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.....SSEEESSSS CS
        p450 392 kg.....nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks.....glllppkpi 459
                 +        + k++ ++  G+G+R+C+G++lAr  l l +a++L  F+++++ + + + i++ +     gl+++p+++
  CDO71862.1 405 SDslaaaMVDTKDEGHVSYGFGRRICVGRHLARDALLLNMASILWMFNIKPPVDATGKEIYCVEdsvdhGLVVRPQQY 482
                 99***996669***************************************9877777776665555566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.99
# Mc/sec: 1541.23
//
Query:       CDO71863.1  [L=316]
Description: hypothetical protein BN946_scf184940.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-19   70.3   0.6    2.7e-19   69.7   0.6    1.3  1  NmrA             NmrA-like family
    2.7e-09   37.2   1.8    3.9e-09   36.7   1.3    1.6  1  NAD_binding_10   NAD(P)H-binding
    3.1e-06   27.6   0.5    1.6e-05   25.4   0.1    2.0  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    0.00012   22.3   0.1    0.00029   21.1   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00048   19.7   0.1     0.0019   17.7   0.1    2.0  2  Epimerase        NAD dependent epimerase/dehydratase family
    0.00088   19.4   0.5      0.002   18.2   0.1    1.7  2  DapB_N           Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.045   13.2   0.0    1.4  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
      0.057   14.1   0.1       0.12   13.1   0.1    1.5  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
      0.072   12.1   0.1       0.12   11.3   0.1    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      0.086   13.4   0.1       0.23   12.1   0.1    1.7  1  EutN_CcmL        Ethanolamine utilisation protein EutN/carbox


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.6   1.5e-22   2.7e-19       1     226 [.       8     247 ..       8     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.5e-22
                 EEESSTTSHHHHHHHHHHHH....HT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS- CS
        NmrA   1 IlviGaTGrqGksvvrallk....aghkvralvRdtkselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGv 94 
                 ++v+G+TG++Gk++  a+l     + h+vr+l+Rd++s +ak+l+e+G+ lv  ++     +l+ a+k+vdvv  +++++s   +  ++++dAa++  +
  CDO71863.1   8 VAVLGGTGALGKQISLAFLTefksNFHTVRVLTRDPSSAVAKELAERGASLVkLDESHLTRVLDDAFKDVDVVVNALSTKSSD-ATNQAVIDAAARSNI 105
                 79************999988788666889***********************66669999**************999955444.555689********* PP

                 SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC.....TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE.-HHHHHH CS
        NmrA  95 khfiySslgddndrsnaeepavphfdsKaeieeyvral.....gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll.daeeDiG 187
                 k ++  ++g+d+ + + +  ++p + +K +i   +r+       i  + +  +    n++ +l     ++   + +  + +  g+p++++  +a++D++
  CDO71863.1 106 KAYFLDEYGSDHWINEFSGYEHPGWLEKQRIATETRKKlqgkkVIAVSKLQLKWNHVNIANSLS-VSYHNVGVDIENNVYSVYGSPSQKFStTAKTDVA 203
                 ************************************9999886666666655544444444333.356666677667777777888888888899**** PP

                 HHHHHH...HHHHHHH.TT.EEEEE-SEEE-HHHHHHHHHHHHT CS
        NmrA 188 afviki...lkdprkl.kg.kriklagntlsgneivelfekkig 226
                 + v+ +   + dp+++ k+   +++ag t++++ei ++  ++ g
  CDO71863.1 204 RSVARLailALDPATApKVpDNVRIAGATVTYEEIRDIVARVKG 247
                 99987522257899997553689999999999999999887765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   1.3   2.2e-12   3.9e-09       1     144 [.      12     165 ..      12     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.2e-12
                     TTTSHHHHHHHHHHHHC-...T-EEEEEETTHHHC..HHHHCTTTCEEEE--TT-.CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT CS
  NAD_binding_10   1 GAtGkvGrllvkellarg...ghevtalvRnpekl..aeleaeeglevvegdvtd.vedlaealkgadaVvsalggggkdeegaknivdaakeag 89 
                     G+tG  G+++    l +     h+v++l+R+p+++  +el ae g+++v++d +  +  l +a+k++d+Vv al+++++d  + ++++daa +++
      CDO71863.1  12 GGTGALGKQISLAFLTEFksnFHTVRVLTRDPSSAvaKEL-AERGASLVKLDESHlTRVLDDAFKDVDVVVNALSTKSSD-ATNQAVIDAAARSN 104
                     88999999886655554445589*********99844566.579********99845779***************99886.789*********** PP

                     --EEEEEEETTTTSGCGCH......HHHHHHHCCHHHHHHHHHHHHHHHHS..SSEEEEEEE- CS
  NAD_binding_10  90 vkRfvlvsaigvgdevpge......fgewnkellkaylaakraaeellras..gldwTivrpg 144
                     +k + l    g+++ + +e       g++ k+ +++  ++k +  +++  s  +l+w  v  +
      CDO71863.1 105 IKAYFL-DEYGSDH-WINEfsgyehPGWLEKQRIATETRKKLQGKKVIAVSklQLKWNHVNIA 165
                     *98876.6666664.333301111134445556677778888888887777334557666655 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   8.7e-09   1.6e-05       2      89 ..       8      99 ..       7     106 .. 0.89
   2 ?    0.2   0.0      0.55   9.9e+02      22      93 ..     161     233 ..     146     234 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.7e-09
                    EEEETTTSHHHHHH.HHHHHC.TSSEEEEEEEESTT..TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHT CS
  Semialdhyde_dh  2 vaivGatGyvGqel.lrlLee.hpevelvvllsssr..saGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaea 89
                    va++G+tG+ G+++ l  L e + ++  v++l+++      k+lae+  +l +  +  ++ v ++++k+vd+v+ al+ + s +  +++++a
      CDO71863.1  8 VAVLGGTGALGKQIsLAFLTEfKSNFHTVRVLTRDPssAVAKELAERGASLVKLDESHLTRVLDDAFKDVDVVVNALSTKSSDATNQAVIDA 99
                    9*************9999*999999*******99996557899999999999999999999999*************999998877776655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.55
                     TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGC..TT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh  22 hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeel..kevdivflalpagvskelapklaeagvkv 93 
                     h ++  +  +s  +  G  ++++v ++++    k++++ + ++  + + +++lal+  ++ ++ ++++ ag++v
      CDO71863.1 161 HVNIANSLSVSYHN-VGVDIENNVYSVYGSPSQKFSTTAKTDVarSVARLAILALDPATAPKVPDNVRIAGATV 233
                     44444444444444.89999999998888888888884444444577889999999999988888888777765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.6e-07   0.00029       1      92 [.       8      99 ..       8     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.6e-07
                     EEEE--.SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvda.eitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCiet 92
                     v ++G+ G+ G+ +    + +f+    ++ v +r+ ++  a+a+++++  ++ ++ld +  + vL+ + k+ d+vvn++   ss +  +a i++
       CDO71863.1  8 VAVLGGtGALGKQISLAFLTEFKSNFhTVRVLTRDPSS--AVAKELAERGASLVKLDESHLTRVLDDAFKDVDVVVNALSTKSSDATNQAVIDA 99
                     5789999999998876666666654469**********..899999999*****************************9888555555544444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     1e-06    0.0019       2      87 ..       9     100 ..       8     113 .. 0.74
   2 ?   -1.4   0.0      0.73   1.3e+03     201     221 ..     295     315 ..     268     316 .] 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                 EEETTTSHHHHHHHHHHHHCT....SEEEEEES-STTTTCHHCHHC..EEEE--TT-HH.HHHHHHHHHT-SEEEE--S.---HHHHHHSHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg....yevigldrlssasntarledl..elveldltdrs.alerlfkeeqpdavihlAa.vggvaassedpadf 87 
                  V+G+tG +G+++  a+l++     ++v +l+r++s+   ++l++   +lv+ld  + +  l+++fk  ++d+v+++    ++ a++     + 
  CDO71863.1   9 AVLGGTGALGKQISLAFLTEFksnfHTVRVLTRDPSSAVAKELAERgaSLVKLDESHLTrVLDDAFK--DVDVVVNALStKSSDATNQAVIDAA 100
                 69**********9988887766677999999999888888877777888888887777646677888..89******66444444444444444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.73
                 EEETTST-EEEEEEHHHHHHH CS
   Epimerase 201 tllgdgtalRdflyveDvaea 221
                  l++ g+a + +  ve++++a
  CDO71863.1 295 ALVNPGEAFWKWTTVEEYVRA 315
                 6788999999*********99 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.1e-06     0.002       2      88 ..       7      97 ..       6     104 .. 0.80
   2 ?   -2.3   0.0       2.5   4.6e+03      79      91 ..     170     182 ..     137     206 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
                EEEEETTTSHHHHHHHHHHHH..STTEEEEEEEETTCSTTTTTBHHHHSSSS..--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHH CS
      DapB_N  2 kvavvGasGrmGkevvkavee..aedlelvaavdrkeselegkdagellglg..klgvavtddleevlekadvliDFTtpeavlenlklal 88
                +vav+G +G +Gk++  a  +  +++++ v ++ r++s++++k++ e   +     +  +t  l+++++++dv++   + +++ ++ ++++
  CDO71863.1  7 SVAVLGGTGALGKQISLAFLTefKSNFHTVRVLTRDPSSAVAKELAERGASLvkLDESHLTRVLDDAFKDVDVVVNALSTKSSDATNQAVI 97
                69*************9998873469************999999988643332224567788999999999*****9888887777777666 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHTT CS
      DapB_N  79 avlenlklalekg 91 
                 ++++n+ + +e++
  CDO71863.1 170 VSYHNVGVDIENN 182
                 3333333333333 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05     0.045      33     108 ..       7      84 ..       2     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
  Glu_dehyd_C  33 salvl.GaGslG.LLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdei.peaseemdlvvEaT 108
                  s+ vl G+G+lG  ++la l+  ++++++v vl r +    + +l +e Ga  v+ +e+++ ++  +a +++d+vv a 
   CDO71863.1   7 SVAVLgGTGALGkQISLAFLTEFKSNFHTVRVLTRDPSSAVAKEL-AERGASLVKLDESHLTRVlDDAFKDVDVVVNAL 84 
                  44555279****5589999*999**********986665555555.566******999999887367899*****9984 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.6e-05      0.12       1      77 [.       8      85 ..       8     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
                     EEEESTTSHHHHH.HHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEE CS
  DXP_reductoisom  1 vviLGsTGSIGtq.tLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlv 77
                     v++LG TG +G+q +L  ++e++ +f+ v +   +  +++a+ ++e  ++lv + +++ ++ l +a+k+ ++ ++ l+
       CDO71863.1  8 VAVLGGTGALGKQiSLAFLTEFKSNFHTVRVLTRDPSSAVAKELAERGASLVKLDESHLTRVLDDAFKDVDVVVNALS 85
                     78*********9967***************999999999999999***********9999999999987666444333 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.9e-05      0.12       1      78 [.       9      88 ..       9     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.9e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrl.ee.lkevrvlDlrespelleelskvnvkkviegDvtd.kdkleealegvdvvihlaslvd 78
                +v+Gg+G lG+++  +++ + ++  ++vrvl  + s+ + +el + +   +++ D    +  l++a ++vdvv+   s   
  CDO71863.1  9 AVLGGTGALGKQISLAFLTEfKSnFHTVRVLTRDPSSAVAKELAERGAS-LVKLDESHlTRVLDDAFKDVDVVVNALSTKS 88
                59***********9998865244699******99999999999988888.8888876625568999999999998755443 PP

>> EutN_CcmL  Ethanolamine utilisation protein EutN/carboxysome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00013      0.23      11      69 ..     136     197 ..     132     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 EESEE-GGGTTSEEEEEEEE-TTS-EE...EEEEEEEESS---TT-EEEEEEGGGGGGSTT- CS
   EutN_CcmL  11 vstrkdeslkgkkLlvvqpldaegepk...geeiVavDtvgAgvGelVlvveGssarkaage 69 
                 ++t+  ++l+gkk + v +l+ + ++    ++  V + +vg  + + V  v Gs  +k  ++
  CDO71863.1 136 IATETRKKLQGKKVIAVSKLQLKWNHVniaNSLSVSYHNVGVDIENNVYSVYGSPSQKFSTT 197
                 68999***************5544333333888*********************99764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2277.07
//
Query:       CDO71864.1  [L=840]
Description: hypothetical protein BN946_scf184940.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-38  131.9  15.8    2.1e-38  131.9  15.8    1.9  2  ABC2_membrane    ABC-2 type transporter
    1.8e-25   90.0   0.0    5.2e-25   88.5   0.0    1.8  2  ABC_tran         ABC transporter
    3.4e-06   26.4  22.0    1.5e-05   24.3  22.3    1.9  1  ABC2_membrane_3  ABC-2 family transporter protein
    0.00042   20.2   0.3       0.12   12.1   0.1    2.5  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0017   18.3   0.2     0.0032   17.4   0.2    1.4  1  RsgA_GTPase      RsgA GTPase
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.019   15.3   0.0    1.4  1  AAA_16           AAA ATPase domain
      0.012   15.5   0.1      0.023   14.6   0.1    1.4  1  NACHT            NACHT domain
      0.013   15.2   0.0        1.5    8.5   0.0    2.2  2  IstB_IS21        IstB-like ATP binding protein
      0.017   15.7   0.0      0.034   14.7   0.0    1.5  1  AAA_18           AAA domain
      0.019   15.3   0.2       0.05   13.9   0.2    1.6  1  AAA_22           AAA domain
       0.02   14.5   0.1       0.16   11.5   0.1    2.2  2  AAA_25           AAA domain
      0.024   14.9   0.1      0.053   13.8   0.1    1.5  1  AAA_28           AAA domain
      0.026   14.2   0.2      0.051   13.3   0.2    1.4  1  AAA_30           AAA domain
       0.03   14.1   0.0      0.064   13.0   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.032   14.4   0.3      0.065   13.4   0.3    1.5  1  AAA_33           AAA domain
      0.039   14.5   0.3      0.093   13.2   0.0    1.6  2  AAA_23           AAA domain
      0.073   13.0   0.0       0.14   12.1   0.0    1.3  1  Rad17            Rad17 P-loop domain
      0.078   13.4   0.1       0.28   11.6   0.1    1.8  2  AAA              ATPase family associated with various cellul
       0.12   12.0   0.1       0.19   11.3   0.1    1.3  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.19   11.8   0.0       0.41   10.6   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.23   11.4   0.6       0.64    9.9   0.6    1.7  2  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9  15.8   2.4e-41   2.1e-38       1     209 [.     565     775 ..     565     776 .. 0.97
   2 ?   -2.2   0.4       2.7   2.3e+03     135     152 ..     814     831 ..     788     838 .. 0.48

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 2.4e-41
  ABC2_membrane   1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95 
                    tq+ +l  re++   rd++l+ ++ ++   +l++++g ++++++ + +++++r+g+lff+   +afs+l+++  +++  r+++ re+++ +ys+ a
     CDO71864.1 565 TQLEVLSAREWKILGRDKTLF-FAHIAVACVLGVFCGGLYFQTDdTIAGFQSRVGCLFFLGALIAFSSLSAL-YNVVEIRPLFLRERSASYYSPTA 658
                    6999**************999.99********************6666666**************9999999.*********************** PP

  ABC2_membrane  96 yvlakvlve.lpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkw 188
                     +l++++++ lp+ ++ ++i+++i+y++ gl  +  +ff fl++l+l++la++ + +l+++l+++   a++++ l  l  + ++Gff+ ++++p +
     CDO71864.1 659 WLLSRFIFDvLPLRIIPTIIVSTITYWMAGLAADaaHFFKFLFILVLYTLAMTLFNFLLACLFRNGGIAILISALTALYQMTYAGFFVHLNDIPPV 754
                    ***********************************999*******************************************************77* PP

  ABC2_membrane 189 lqwiaylnPltyavealrsnl 209
                    l+w+++l+Pl+ya+eal +n+
     CDO71864.1 755 LRWLQWLCPLKYALEALSVNE 775
                    *****************9987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
  ABC2_membrane 135 llllltalaasslgllis 152
                    +l+l+ ++a+ +lg+++ 
     CDO71864.1 814 VLVLFAFIAGFGLGVIFV 831
                    233333333333444333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.5   4.7e+03      90     119 ..     159     188 ..     131     201 .. 0.71
   2 !   88.5   0.0   6.1e-28   5.2e-25       1     137 []     259     407 ..     259     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.5
                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrval 119
                 ++l+ + ++ +  +s++ssLSgG    +a+
  CDO71864.1 159 DTLSGNSTTSNDNNSGGSSLSGGVIAGLAV 188
                 4444444444555567799**997666555 PP

  == domain 2  score: 88.5 bits;  conditional E-value: 6.1e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l+nvs  + +ge++ai+G++GaGK+tL+++la+++k  +G+++     ++ + +   + ++g++pq++ l p ltv+e                 e+ +
  CDO71864.1 259 LDNVSGRVVPGEVMAILGPSGAGKTTLIEILAQKHK--SGRVT---GRVSFTAKGGGNVRVGFVPQQDVLPPMLTVEEAllfaarlrlpegvpdsEKHA 352
                 79*******************************986..78882...33444467888999*********************************999999 PP

                 CHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++++++lg+ +l++ +++++  + +SgG+ +rv +   l+ kp++l+lDEpt+
  CDO71864.1 353 RVDDIMDRLGIAHLRNVRIGDGEkRGISGGEMRRVTIGLELVAKPDVLILDEPTS 407
                 9******************999889****************************96 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3  22.3   1.8e-08   1.5e-05     166     317 ..     621     774 ..     604     834 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.8e-08
  ABC2_membrane_3 166 liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdfl.vyllqlllilll...afglgipfg..nlglllllfllfglayi 253
                      ++l  li ++++++++++ve +   ++e+  +   sp++ +ls++++d+l + +++++++  +   + g  +  +  +++ +l+ ++l+ la++
       CDO71864.1 621 FFLGALIAFSSLSALYNVVEIRPLFLRERSASY-YSPTAWLLSRFIFDVLpLRIIPTIIVSTItywMAG--LAADaaHFFKFLFILVLYTLAMT 711
                      4555556666777889*************8888.**************995566667766555566777..777776999999*********** PP

  ABC2_membrane_3 254 algyllsslfknsetaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrli 317
                       + +ll +lf+n + a+++  ++ l   + ++g+f+ l+d+p  l+w+ ++ P+ +  ++l +++
       CDO71864.1 712 LFNFLLACLFRNGGIAILISALTAL-YQMTYAGFFVhLNDIPPVLRWLQWLCPLKYALEAL-SVN 774
                      ****************986666666.77777777777****************98887777.444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00014      0.12       1      20 [.     271     290 ..     271     318 .. 0.87
   2 ?    5.6   0.0     0.014        12     252     276 ..     391     415 ..     346     442 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 ++++ Gp g+GK++L+++l 
  CDO71864.1 271 VMAILGPSGAGKTTLIEILA 290
                 579***************95 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.014
      AAA_21 252 lralkkgsllliDEpEngLHPkllr 276
                 l++  k+++l++DEp +gL+    +
  CDO71864.1 391 LELVAKPDVLILDEPTSGLDSVSAA 415
                 5556677************974444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   3.7e-06    0.0032      97     131 ..     267     303 ..     248     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.7e-06
                  CTTSEEEEECSTTSSHHHHHHHHCTT-..----S--- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpel..elktgevs 131
                  + +++++++G+SG+GK+tLi+ l++++     tg vs
   CDO71864.1 267 VPGEVMAILGPSGAGKTTLIEILAQKHksGRVTGRVS 303
                  456999*****************99641134456665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.3e-05     0.019      17      51 ..     264     296 ..     252     435 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-05
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 +rv  g  e++ + G+sG GK++l++ l++  +  
  CDO71864.1 264 GRVVPG--EVMAILGPSGAGKTTLIEILAQKHKSG 296
                 355555..799**************9988644433 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.7e-05     0.023       2      37 ..     271     303 ..     270     307 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEE CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklv 37 
                 ++++ G++G GKTtL++ la++ ++g+  +   +++
  CDO71864.1 271 VMAILGPSGAGKTTLIEILAQKHKSGRVTG---RVS 303
                 799***********************9887...344 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017       1.5      48      70 ..     270     292 ..     245     306 .. 0.83
   2 ?    4.2   0.0     0.037        32     103     149 ..     391     439 ..     382     453 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                 e +++lGpsG+GK+ l   l+++
  CDO71864.1 270 EVMAILGPSGAGKTTLIEILAQK 292
                 7799************9999886 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.037
   IstB_IS21 103 lkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnl 149
                 l+ ++k+d+lilD+   gl  ++ a+ + +++ +++  e+ + +i+s  
  CDO71864.1 391 LELVAKPDVLILDEptSGLDSVSAAKVASVLHALAHDPENPTAVIASIH 439
                 6678899******965699*******99999999999998888887744 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.9e-05     0.034       3      29 ..     274     303 ..     272     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.9e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...gvnlr 29 
                 + G++G+GKttl + L++++++     +++
  CDO71864.1 274 ILGPSGAGKTTLIEILAQKHKSgrvTGRVS 303
                 89**************99987766633333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   5.8e-05      0.05       7      30 ..     271     294 ..     268     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.8e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqld 30 
                 ++++ G+sG+GKTtl++ l+++++
  CDO71864.1 271 VMAILGPSGAGKTTLIEILAQKHK 294
                 6899****************9984 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00019      0.16      25      65 ..     261     300 ..     244     440 .. 0.76
   2 ?   -0.1   0.0      0.66   5.7e+02      46      94 ..     582     621 ..     579     659 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      AAA_25  25 lvkgllpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                  v g ++ ge+ ++ G++g+GKttl   la +  +G+ ++g
  CDO71864.1 261 NVSGRVVPGEVMAILGPSGAGKTTLIEILAQKHKSGR-VTG 300
                 67888899*****************877776666666.445 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.66
      AAA_25  46 KttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravg 94 
                 Kt +  ++a+a+++G  + g         ly +++d+ ++++ R+ +++
  CDO71864.1 582 KTLFFAHIAVACVLGV-FCG--------GLYFQTDDTIAGFQSRVGCLF 621
                 9999999999999999.655........799999999999999998776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   6.2e-05     0.053       3      22 ..     273     292 ..     271     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-05
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 +i+G++++GKTtl+e La++
  CDO71864.1 273 AILGPSGAGKTTLIEILAQK 292
                 89****************75 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     6e-05     0.051      19      53 ..     270     306 ..     252     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag..grviglA 53 
                  v+++ Gp G+GKtt+++ l++ +++    grv   A
  CDO71864.1 270 EVMAILGPSGAGKTTLIEILAQKHKSGRvtGRVSFTA 306
                 5999****************99988663335665555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.4e-05     0.064      21      39 ..     268     286 ..     258     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.4e-05
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 + +++ + GpsG+GK+Tl+
  CDO71864.1 268 PGEVMAILGPSGAGKTTLI 286
                 445899************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   7.6e-05     0.065       2      28 ..     272     298 ..     271     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavll 28 
                 + + G++G+GK+tl+e l++k++  ++
  CDO71864.1 272 MAILGPSGAGKTTLIEILAQKHKSGRV 298
                 5678*****************985555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00011     0.093      22      39 ..     272     289 ..     268     291 .. 0.88
   2 ?   -2.5   0.0       7.4   6.3e+03      46     114 ..     509     572 ..     501     580 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      AAA_23  22 tlItGpNGaGKTTildAi 39 
                  +I Gp GaGKTT+++ +
  CDO71864.1 272 MAILGPSGAGKTTLIEIL 289
                 68*************976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.4
      AAA_23  46 etprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererelskkkgkttkkaklellei 114
                   ++l ++  +g+ +++ve + +   ++ + l+ +++d+   ++ + +r+ +  + + t  ++le l+ 
  CDO71864.1 509 TNSGLHND-TGGSSTDEVEKGLG-GRSPNLALENKTEDD---ERPKKQRWYNARQYQATFLTQLEVLSA 572
                 34444433.44777777776664.334444444444444...457777777777777776666666655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.14      46      69 ..     270     293 ..     250     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
       Rad17  46 riLLisGPsGCgkstvvkvLskel 69 
                 +++ i GPsG gk+t +++L++++
  CDO71864.1 270 EVMAILGPSGAGKTTLIEILAQKH 293
                 48899****************987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00033      0.28       2      23 ..     273     294 ..     272     337 .. 0.85
   2 ?   -1.4   0.0       3.4   2.9e+03      57      98 ..     395     430 ..     343     445 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00033
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                  + Gp G GKT+l++ +a++ +
  CDO71864.1 273 AILGPSGAGKTTLIEILAQKHK 294
                 578****************965 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.4
                 STSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  57 akpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 akp +l++DE  +   s       ++ +v+++L +   + ++
  CDO71864.1 395 AKPDVLILDEPTSGLDSV------SAAKVASVLHALAHDPEN 430
                 368999999976666655......455556666555555555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00022      0.19       2      26 ..     271     295 ..     270     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
                 EEEEEESTTCCHHHHHHHHHCT--S CS
        cobW   2 vtvltGflGsGKTtLlnhllenrag 26 
                 v+ + G+ G+GKTtL++ l +++++
  CDO71864.1 271 VMAILGPSGAGKTTLIEILAQKHKS 295
                 67899************99977665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00048      0.41      18      45 ..     266     295 ..     250     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00048
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgv 45 
                 +  g+v+++ G+ GaGKTtl+  la++ + 
  CDO71864.1 266 VvpGEVMAILGPSGAGKTTLIEILAQKHKS 295
                 23678999****************998765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00075      0.64       3      47 ..     273     316 ..     271     319 .. 0.79
   2 ?   -2.3   0.0       4.2   3.6e+03      94     140 ..     395     445 ..     388     451 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00075
                 EEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-.------EE CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr.eggrrigF 47 
                 +i Gp+G GKtTl++ ++++ ks   +v+G +    +  g+ r+gF
  CDO71864.1 273 AILGPSGAGKTTLIEILAQKHKSG--RVTGRVSFTAKgGGNVRVGF 316
                 688***************999655..88887777777345568887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.2
                 HHH-EEEE--.-STTGGG-HHHHHHHHHHHT....TTSEEEEE--SS--SHH CS
    NTPase_1  94 seadviviDE.iGkmElkskkfkeaveevLk....sekpvlavihrrkdlal 140
                  ++dv+++DE    +   s+    +v ++L+    + + v+a ih++ +++l
  CDO71864.1 395 AKPDVLILDEpTSGLDSVSAAKVASVLHALAhdpeNPTAVIASIHQP-SSQL 445
                 56778888873223444444444444444432311345677777777.4455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 5004.12
//
Query:       CDO71865.1  [L=179]
Description: hypothetical protein BN946_scf184940.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   32.1   4.0    1.3e-07   32.1   4.0    2.3  2  HsbA      Hydrophobic surface binding protein A
      5e-07   30.0   5.0    1.2e-06   28.7   5.0    1.7  1  C166      Family of unknown function


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   4.0   1.4e-11   1.3e-07       8     119 ..      35     148 ..      32     149 .. 0.83
   2 ?    0.1   0.1      0.11     1e+03      33      50 ..     159     176 ..     152     179 .] 0.52

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.4e-11
                 HHHHHHHHHHHHHHHHH--S.H...HHHHHHHHHHHHHHHHHHHHHHHT.S--.--HHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHT-HHHHHH CS
        HsbA   8 ittistavtaldtavnafnG.g.asalpilsasnalvsaikkattdaqa.sap.ltdeealalaqavqtLepdvkaaldaliaKkpafdkagltslvls 102
                 +tt+s++  + + +++   G + ++   i ++ n++vs++ + tt++q+ s+  l ++ a+++++a++t+++  +a+l+a+i K +   k+ +t+ + +
  CDO71865.1  35 VTTLSDSARKTTVSLSV--GnAvSEFPVIVKDINKIVSTVGQLTTTIQKgSGKpLPEQGAKDVVAALTTFVKVHQALLNAIIGKHSLASKFVFTAPIAA 131
                 55555555555555554..35667889999999*******99999887514446********************************************* PP

                 HHHHHHHHHHHHHHHHH CS
        HsbA 103 sLqdlkaasdaLsdalv 119
                  L+ + a +d+++ al+
  CDO71865.1 132 ALRAIEAGVDTFAFALI 148
                 ************98886 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHH CS
        HsbA  33 pilsasnalvsaikkatt 50 
                 + ++++++l+ +ik+a +
  CDO71865.1 159 AANKQFASLQVTIKAAVK 176
                 344555555555555544 PP

>> C166  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   5.0   1.4e-10   1.2e-06      67     156 ..      56     151 ..       2     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.4e-10
        C166  67 anfPqliigsltiv.tva..lsaisfdglaPii.viadlvidvfrtvvrvlsdllniliGkvGllskvPvlGPflaavllivefv..lvieliklv 156
                 ++fP ++    +iv tv   + +i      P+    a+ v+ ++ t+v+v++ lln +iGk  l sk  +  P  aa+  i  +v  +++ li+l+
  CDO71865.1  56 SEFPVIVKDINKIVsTVGqlTTTIQKGSGKPLPeQGAKDVVAALTTFVKVHQALLNAIIGKHSLASKFVFTAPIAAALRAIEAGVdtFAFALIDLI 151
                 348888877777762343224556644555665145779*****************************999988777766767889999****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1205.97
//
Query:       CDO71866.1  [L=178]
Description: hypothetical protein BN946_scf184940.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-07   31.7   5.4    1.6e-07   31.7   5.4    2.0  2  HsbA          Hydrophobic surface binding protein A
    1.5e-05   25.2   5.0      3e-05   24.2   5.0    1.7  1  C166          Family of unknown function
     0.0047   17.0   4.1       0.53   10.3   0.7    2.7  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
  ------ inclusion threshold ------
      0.025   15.1   2.0      0.025   15.1   2.0    1.9  2  PSI_PsaJ      Photosystem I reaction centre subunit IX / PsaJ


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   5.4   3.6e-11   1.6e-07       5     115 ..      32     144 ..      25     149 .. 0.87
   2 ?   -1.0   0.2       0.5   2.2e+03      35      50 ..     159     174 ..     153     178 .] 0.74

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.6e-11
                 HHHHHHHHHHHHHHHHHHHH--S....H..HHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHT-HHH CS
        HsbA   5 isdittistavtaldtavnafnG....gasalpilsasnalvsaikkattdaqasapltdeealalaqavqtLepdvkaaldaliaKkpafdkagltsl 99 
                 i+++t++s++ t ++ ++++ +        ++ + ++++++v+++ + t++ + + pl d++a+ +++a++++++  +a+l+++i K +   ++ +t++
  CDO71866.1  32 INQVTQLSASSTHVKHSLSGLQCseypV--GQVLINDFQNIVNTVVAFTDTLSDAKPLGDADAQLVVAALTQFVKVHQALLNTVIGKHSLAAQFFVTAQ 128
                 4566677777777777777775574542..6899***************************************************************** PP

                 HHHHHHHHHHHHHHHH CS
        HsbA 100 vlssLqdlkaasdaLs 115
                 + + L++l    d+++
  CDO71866.1 129 IAAILRTLEGGIDTFA 144
                 *******998888886 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHHHHHH CS
        HsbA  35 lsasnalvsaikkatt 50 
                 +++++al+ +i +a+t
  CDO71866.1 159 NTQFSALHVTISNAIT 174
                 5678888888888877 PP

>> C166  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   5.0   6.7e-09     3e-05      72     156 ..      63     151 ..       2     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 6.7e-09
        C166  72 liigsltiv.tvalsaisfdglaPii.viadlvidvfrtvvrvlsdllniliGkvGllskvPvlGPflaavllivefv...lvieliklv 156
                 li  + +iv tv  ++ +++   P+    a+lv+ ++  +v+v++ lln +iGk  l ++  ++   +aa+l+ +e+    ++++li l+
  CDO71866.1  63 LINDFQNIVnTVVAFTDTLSDAKPLGdADAQLVVAALTQFVKVHQALLNTVIGKHSLAAQ-FFVTAQIAAILRTLEGGidtFAFDLIALI 151
                 4556666653677888889999998625678***********************998776.58899**********97577899999998 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.7    0.0015       6.6      18      78 ..       6      76 ..       2     113 .. 0.58
   2 !   10.3   0.7   0.00012      0.53      31      77 ..     124     170 ..      92     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
  Baculo_PEP_C 18 LtnvLnairlqnvqilaqlatlldaietqLnals...edlksllaeldt.......rldtlltnLtdalna 78
                  + +vL+a+    ++++aq at++++  +q+++ls   +++k++l+ l+         l + ++n+ +++ a
    CDO71866.1  6 VAPVLAAVAFGAASVVAQGATAIANGINQVTQLSassTHVKHSLSGLQCseypvgqVLINDFQNIVNTVVA 76
                  56788888777777766655555554444444430003344444433335555444333333333334444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00012
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdaln 77 
                    ++aq+a++l ++e+ +++++ dl +l++ +++  +t++++L+ ++ 
    CDO71866.1 124 FVTAQIAAILRTLEGGIDTFAFDLIALIPTQSDSANTQFSALHVTIS 170
                   478******************************99999999998875 PP

>> PSI_PsaJ  Photosystem I reaction centre subunit IX / PsaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.0   5.6e-06     0.025       5      24 ..       1      20 [.       1      22 [. 0.90
   2 ?   -2.4   0.0       1.6   7.2e+03       6      17 ..     122     133 ..     121     134 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.6e-06
    PSI_PsaJ  5 lkYLStAPVlatlwlsftAg 24
                +k++S+APVla + +  +++
  CDO71866.1  1 MKFFSVAPVLAAVAFGAASV 20
                69*************98876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
    PSI_PsaJ   6 kYLStAPVlatl 17 
                 +++ tA ++a+l
  CDO71866.1 122 QFFVTAQIAAIL 133
                 577777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1292.22
//
Query:       CDO71867.1  [L=177]
Description: hypothetical protein BN946_scf184940.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1173.64
//
Query:       CDO71868.1  [L=597]
Description: hypothetical protein BN946_scf184940.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-46  157.7   0.0    1.6e-44  152.2   0.0    2.1  2  Pkinase      Protein kinase domain
    6.8e-26   91.1   0.0    4.4e-25   88.4   0.0    1.9  2  Pkinase_Tyr  Protein tyrosine kinase
    0.00011   21.6   0.0    0.00018   20.9   0.0    1.2  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0021   17.4   0.0      0.022   14.1   0.0    2.4  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.05   13.5   2.6       0.19   11.6   0.3    2.6  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011        41       3      37 ..     265     298 ..     263     309 .. 0.80
   2 !  152.2   0.0   4.6e-48   1.6e-44      20     198 ..     350     544 ..     346     561 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.011
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkeka 37 
                  ++ lG+G+f++V  a+ +++g+  A+  ++k++ 
  CDO71868.1 265 LVKPLGTGTFSSVWLAR-DTQGQLGALELMRKSSL 298
                 6789*************.58888888888777765 PP

  == domain 2  score: 152.2 bits;  conditional E-value: 4.6e-48
                 ETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH...HHSS--HHHHHHHHHHHHHHHHH CS
     Pkinase  20 eketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle...rkgslseeeakkiakqilegley 113
                 +++ g+ vAvK+ ++   + +++   +++rE+++l+++ hp iv ++++f+++++ +lvle+v ggel +l+    r+ +l+e  +++i+ ++++++++
  CDO71868.1 350 NAKAGRLVAVKMTERAVCNANSRsrVSFVREVEVLRHIAHPSIVSYLHSFSTPSHHCLVLEHVAGGELLELVDdpvRHAQLDEPLVRRIWGELCKAVAW 448
                 567899*******998777766655899********************************************99999999******************* PP

                 HHHTTEE-SS-SGGGEEEETTTE.........EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 114 lHskgiiHrDlKpeNiLidekge.........lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfs 198
                 +Hs g++HrD+K eNiL+ ++           +K+tDFGl++ ++  ++ lt+ +g++ Y APE++ +++y ++++D W++Gv+ly l t++ pf 
  CDO71868.1 449 MHSVGLVHRDIKLENILLTTDPFtqplpssslIKLTDFGLSRFIDPAQPlLTTLCGSESYAAPELVMGRPYdGRETDAWACGVVLYALATRRLPFD 544
                 *******************8555667777778**************9999*********************9***********************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.1   3.7e+02       1      21 [.     263     283 ..     263     299 .. 0.84
   2 !   88.4   0.0   1.2e-28   4.4e-25      25     200 ..     351     538 ..     343     577 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.1
                  EEEEEEEEEESSEEEEEEEEE CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlk 21 
                  lel k lG G+f++V+ ++ +
   CDO71868.1 263 LELVKPLGTGTFSSVWLARDT 283
                  678899**********98755 PP

  == domain 2  score: 88.4 bits;  conditional E-value: 1.2e-28
                  TSSEEEEEEEEEST...TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.CTTTSBHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  25 ekkevkVavKtlke...eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk.ekekltlkdllsfalqvAkGmey 118
                   k+   VavK+ ++   +a+++++ ++++e+++++++ hp iv++l   +  +++++v+e v+gG+Ll+ + +  ++++l+   + ++  +++k++++
   CDO71868.1 351 AKAGRLVAVKMTERavcNANSRSRVSFVREVEVLRHIAHPSIVSYLHSFSTPSHHCLVLEHVAGGELLELVDDPvRHAQLDEPLVRRIWGELCKAVAW 448
                  566778*****9753337888889**************************99*******************9983345555666668889******** PP

                  HHHTTEEEST-SGGGEEEEE.........TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 119 LeskklvHrdlaarNvLlse.........nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEift 200
                  ++s  lvHrd+   N+Ll++         ++++k++DfGL+r i  d  +   ++   +  + apE ++ + +   ++D W+ Gv+l+ ++t
   CDO71868.1 449 MHSVGLVHRDIKLENILLTTdpftqplpsSSLIKLTDFGLSRFI--DPAQPLLTTLCGSESYAAPELVMGRPYDgRETDAWACGVVLYALAT 538
                  *******************999999999999*************..666666667778889***********97478***********9887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     5e-08   0.00018      93     154 ..     406     469 ..     370     486 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5e-08
         Kdo  93 lllterlegaq..dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqe 154
                  l+ e+++g +  +L+d   ++a+l+e l r+++ ++ +++a +h++g+ H+d+   nill ++
  CDO71868.1 406 CLVLEHVAGGEllELVDDPVRHAQLDEPLVRRIWGELCKAVAWMHSVGLVHRDIKLENILLTTD 469
                 567777777551134444456788*************************************986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.5   1.8e+03      12      43 ..     261     291 ..     255     325 .. 0.75
   2 !   14.1   0.0   6.1e-06     0.022     152     252 ..     441     545 ..     416     554 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.5
  Kinase-like  12 rtlvrgellkkgdrsvvfevkdqetgeplavk 43 
                   tl  +++l+ g +s v++++d + g+  a+ 
   CDO71868.1 261 LTLELVKPLGTGTFSSVWLARDTQ-GQLGALE 291
                  57888999*************988.6655555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.1e-06
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldek.........gglmlggftaLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkldaWqlG 237
                  +l + +a +++ glvh +++ +n+ll  +           ++l++f+  +      +l  + +  +++a pEl+  r             ++daW+ G
   CDO71868.1 441 ELCKAVAWMHSVGLVHRDIKLENILLTTDpftqplpssSLIKLTDFGLSRFIDPAQPLlTTLCgsESYAAPELVMGRPY-D-------GRETDAWACG 530
                  6778899999999999999999999976522211111134566776644444444555344447788888888776433.3.......4589****** PP

  Kinase-like 238 lviyriwclklPltl 252
                  +v y ++ + lP++ 
   CDO71868.1 531 VVLYALATRRLPFDP 545
                  *************85 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.85   3.1e+03     112     162 ..     187     238 ..     175     247 .. 0.60
   2 ?    5.9   0.2     0.003        11      28     108 ..     369     452 ..     350     453 .. 0.74
   3 ?   11.6   0.3   5.4e-05      0.19     135     182 ..     424     470 ..     396     509 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.85
                 TTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC....HHHHHHHHHHHHHHHH--S CS
         APH 112 alpladflaqdlellrqlesatarllaselld....lleeleeqvlaalaallpg 162
                 a+p  + ++q++ +  +++s +     s++      ++ee ++ v+ ++++  p+
  CDO71868.1 187 AAPYHHQGEQTISPVDLEHSHAS--SSSLQVTptptRREETAR-VASRVPPSPPA 238
                 56666777788888888888743..222222233466777777.77777776665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.003
                 E-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.........HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  28 npparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.........klsaaqlpellealgeflaalhqv 108
                 ++  r+  ++ rev++lr++a   + v  ++ + t  ++ +    ++e v g  ll+         +l+++  ++++++l  + a +h+v
  CDO71868.1 369 ANS-RSRVSFVREVEVLRHIAHPSI-VSYLHSFSTPSHHCL----VLEHVAGGELLElvddpvrhaQLDEPLVRRIWGELCKAVAWMHSV 452
                 333.489999**********99989.766667767777777....555555555555555555555999******************998 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 5.4e-05
                 CCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC... CS
         APH 135 rllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..p 182
                 + ++++l++    l ++++ +l + ++   + +l+H+D+++ N+l++  p
  CDO71868.1 424 PVRHAQLDE---PLVRRIWGELCKAVAWMHSVGLVHRDIKLENILLTtdP 470
                 455555555...6777788888877777899****************330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4322.47
//
Query:       CDO71869.1  [L=310]
Description: hypothetical protein BN946_scf184940.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2330.77
//
Query:       CDO71870.1  [L=220]
Description: hypothetical protein BN946_scf184940.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-20   73.5   0.0    2.2e-20   72.8   0.0    1.2  1  DOPA_dioxygen  Dopa 4,5-dioxygenase family


Domain annotation for each model (and alignments):
>> DOPA_dioxygen  Dopa 4,5-dioxygenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   1.2e-24   2.2e-20       4      90 ..      42     132 ..      40     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1.2e-24
                    EEEE...-GGGHHHHHHHHHHHHHHTTTT......E---BSS--TT-SSEEEEEEE.-HHHHHHHHHHHHHH-TT--EEEEEESS-H.HHHH CS
  DOPA_dioxygen   4 hiyylendeaekkeAkeLrekirrefeee....lrvgklaekpiGPhpvamfevdvftpeqfgkvvswlalnrgplsvLiHpntgde.lrdH 90 
                     iy+++++++e+++A eLr++++r  ++     ++++++++ piGPhpv+++e+++ ++e+f +v+s+l lnrg+lsvLiHp t++e  rd 
     CDO71870.1  42 DIYFHQRNADEHQAALELRDAVLRLRRDGafvaVPLFRVNTDPIGPHPVGSYEIWC-PSESFVSVYSYLCLNRGNLSVLIHPLTREEgPRDS 132
                    79********************9984443676689*********************.***************************99845554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1505.54
//
Query:       CDO71871.1  [L=648]
Description: hypothetical protein BN946_scf184940.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-49  165.6   0.3    1.1e-47  160.7   0.0    2.4  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    1.8e-41  142.2   1.1    9.6e-37  126.8   0.3    2.4  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    6.9e-18   64.7   0.1    4.1e-17   62.2   0.1    2.1  2  Pribosyltran    Phosphoribosyl transferase domain
    9.2e-05   22.0   0.1    0.00016   21.2   0.1    1.3  1  UPRTase         Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.0   2.5e-51   1.1e-47       2     116 .]       8     123 ..       7     123 .. 0.99
   2 ?    2.5   0.0      0.03   1.3e+02      15      88 ..     183     256 ..     178     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 160.7 bits;  conditional E-value: 2.5e-51
  Pribosyltran_N   2 kifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqdr 96 
                     +i++g+s++ La+++++rl+v+l+ ++v++f++gEi+v+i esvr++dv+iiq+ +++vndnlmell++i+a++ asa+ritaViP+++y+r d+
      CDO71871.1   8 RILTGNSHPGLAQAVCERLNVPLTPCTVKKFSNGEINVKIAESVRDEDVYIIQTGCTDVNDNLMELLILISACKGASARRITAVIPCYPYARMDK 102
                     799******************************************************************************************** PP

  Pribosyltran_N  97 k.ksrepisaklvaklLeaaG 116
                     k ksr+pi+aklva++L  aG
      CDO71871.1 103 KdKSRAPITAKLVANMLAVAG 123
                     *999**************998 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.03
  Pribosyltran_N  15 kiakrlgvelgkakvsrfadgEikveiee....svrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPy 88 
                     +ia++lgve + ++ +r  + +  ve  e    +vr+k  +++ ++ ++       l+l + +lr   ak++ a + +
      CDO71871.1 183 AIADKLGVEFALIHRERTRNSNGPVEKMEvlvgDVRDKVAILVDDMIDS----GTTLTLAARSLRDNGAKKVYALVSH 256
                     6999999999999999988888888888877778888888888887755....6778999999999999999887765 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.5e-06     0.038       2      39 ..     165     202 ..     164     210 .. 0.91
   2 !  126.8   0.3   2.1e-40   9.6e-37      77     183 ..     213     319 ..     202     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.5e-06
                     GGGEEEEESSGGGHHHHHHHHHHTT-EEEEE------- CS
  Pribosyl_synth   2 yrnavivakspgsakkatsyaerlrlglavihGeqkea 39 
                     ++n++iv+ + g ak+ t+ a++l +  a+ih e+ ++
      CDO71871.1 165 WKNSIIVSPDAGGAKRVTAIADKLGVEFALIHRERTRN 202
                     69******************************998765 PP

  == domain 2  score: 126.8 bits;  conditional E-value: 2.1e-40
                     EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHHHHH CS
  Pribosyl_synth  77 vvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllaeair 171
                     +vGdv  ++ai+vdd+id  +++  aa+ l+++Ga k+y+l++hGlls+ + +++ee +i+++vvtnt+p++ +++ csk+ t+d+s  +ae+ir
      CDO71871.1 213 LVGDVRDKVAILVDDMIDSGTTLTLAARSLRDNGAKKVYALVSHGLLSETNMKKIEELPIEQLVVTNTVPQKQHEAACSKLVTIDVSPTIAESIR 307
                     79********************************************************************************************* PP

                     HHHHT---TT-S CS
  Pribosyl_synth 172 rihngesmsylf 183
                     r hnges+s lf
      CDO71871.1 308 RTHNGESISLLF 319
                     **********99 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.21   9.6e+02      43      71 ..      18      46 ..      17      63 .. 0.80
   2 !   62.2   0.1   9.1e-21   4.1e-17      22     124 ..     161     256 ..     146     283 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
                  HHHHHHHHSTT-EE-EEEEEE-TTT--EE CS
  Pribosyltran 43 fakiladeLevplayvrkvkyrpdgseea 71
                  +a+++  +L+vpl+   ++k++++  ++ 
    CDO71871.1 18 LAQAVCERLNVPLTPCTVKKFSNGEINVK 46
                  6899999*******999999988765554 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 9.1e-21
                   EEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEE CS
  Pribosyltran  22 ileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeev 118
                    +   ++k+ ++v ++ gG  +++++ad+L+v++a + +++ r++++++ +  +     l +d+++k  ++VDD++d+G+Tl+ a++ L++ g+++v
    CDO71871.1 161 NI--EGWKNSIIVSPDAGGAKRVTAIADKLGVEFALIHRERTRNSNGPVEKMEV-----LVGDVRDKVAILVDDMIDSGTTLTLAARSLRDNGAKKV 250
                   33..46********************************************9665.....9************************************9 PP

                   EEEEEE CS
  Pribosyltran 119 riavlv 124
                    + v++
    CDO71871.1 251 YALVSH 256
                   988877 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   3.6e-08   0.00016      96     171 ..     194     269 ..     176     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.6e-08
     UPRTase  96 hlglqreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlae 171
                  +  +r  ++  pve ++ L  +++++ ++l+D +i +G ++  a + L+++g+++   lv   l se  +k++ e
  CDO71871.1 194 LIHRERTRNSNGPVEKMEVLVGDVRDKVAILVDDMIDSGTTLTLAARSLRDNGAKKVYALVSHGLLSETNMKKIEE 269
                 333455567789***************************************9998888788888888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4229.32
//
Query:       CDO71872.1  [L=535]
Description: hypothetical protein BN946_scf184940.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-38  131.0   2.3    6.6e-38  130.7   2.3    1.2  1  AA_kinase  Amino acid kinase family
    7.7e-11   41.8   0.0    0.00024   21.0   0.1    2.6  2  PUA        PUA domain
  ------ inclusion threshold ------
        1.5    9.5   5.5         23    5.6   1.8    2.6  3  Pex14_N    Peroxisomal membrane anchor protein (Pex14p) conse


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   2.3   1.1e-41   6.6e-38       2     241 .]      11     245 ..      10     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.1e-41
                 EEEEEE...-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   2 rvVvKl...GGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaa 92 
                 ++V+Kl   G ss+  + +     + l +++e +  l+++g+k+v+V++g +++ gl +   ++  +++a            + +++ala++g+  + a
  CDO71872.1  11 TIVIKLaheGTSSIVHETThqpllSTLSAIVETVVHLRSQGHKVVLVSSG-AIGVGLKRM--EVATRPKA------------LSKKQALAAIGQGRLIA 94 
                 6777776667776664444579999*************************.999999999..99999998............6777************* PP

                 HHHTTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTT CS
   AA_kinase  93 llaaglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpk 191
                 l+++++ + g + a++++t++++   sd++++ +  ++++ell++gvvp++++++++++ +   +g++Dt++a+   +++Ad+l +ltdVdG+y+++p+
  CDO71872.1  95 LWDNLFGQLGQPIAQILLTRGDI---SDRTRYLNAVNTFKELLSMGVVPIVNENDTVSVSEI-KFGDNDTLSAITSSMIHADYLFLLTDVDGLYTSNPR 189
                 ***********************...*****************************9999987.59********************************** PP

                 TCCTTCECCEE.EHHHCHH......CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 192 kvpdarllpei.svdeaee......saselatgGmkvkhpaalaaarrggipvvItn 241
                 k+p+a +++ + s+ ++++        s+l+tgGm++k+ aa  a   g + +vIt+
  CDO71872.1 190 KDPNAARIDVVtSIASIRSqvstktLGSNLGTGGMETKLIAAEIATAAG-VTTVITS 245
                 ***********99999999********************9999998888.8888875 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   4.1e-08   0.00024       1      43 [.     350     395 ..     350     401 .. 0.91
   2 !   18.1   0.0   3.3e-07     0.002      32      71 ..     470     513 ..     466     516 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.1e-08
                 CEEEE-HHHHHHHHT...T-EEEGGGEEEEETT--TTSEEEEEETT CS
         PUA   1 grvvvddgAvkalls...gasLlapGvvevegdfeegdvVaivded 43 
                 g v++d gA   l++   g  Lla+Gv++v+g f  g+ V+i+ + 
  CDO71872.1 350 GSVIIDSGAHHVLSKresGGRLLAAGVLGVRGAFASGQAVRILIRR 395
                 689******99999999999**********************9875 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.3e-07
                 -TTSEEEEEETTS....CEEEEEEESS-HHHHHHHCTSEEEEEE CS
         PUA  32 eegdvVaivdedg....elvavGlanysseelakikggksveie 71 
                  e d+V+i         e+v++Glany+s+++ ++kg++s  i 
  CDO71872.1 470 PEEDTVVIERDTSewelEEVGRGLANYNSAQIDRVKGLRSSYIA 513
                 57788888777434667********************9998765 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.4      0.01        61      75     132 ..     278     342 ..     228     353 .. 0.49
   2 ?    5.6   1.8    0.0038        23      64     127 ..     409     473 ..     386     484 .. 0.54
   3 ?   -2.9   0.0       1.6   9.8e+03      32      46 ..     505     519 ..     503     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.01
     Pex14_N  75 atpqpqaasqtsqsspspsppaqqqqqqy...............rpPivtypefltkppkppppPlrtwrdll 132
                 ++p+pq ++ + +++ps++ +++++++++               rpP + +         p  +Plr+++++ 
  CDO71872.1 278 SSPEPQLPTVSLTPTPSTDDHTSTTPTPSsvgassiaspipngvRPPHTLF--------LPSTMPLRDLKSWT 342
                 222222222222222222222222222223334444445445545555555........23368888888775 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0038
     Pex14_N  64 eqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqy.rpPivtypefltkppkppppPlrt 127
                 +++ + ++ss++t+ p  a++t+ ++p+ +p+a+ +++ +   P+ t  e +t+++  +p+P+ +
  CDO71872.1 409 TETDSPTSSSARTTYPDGATTTQPNTPEINPSASLSSSIStLDPLPTADEEMTPSTTLKPLPEED 473
                 22223333334444444443333333333344443333336889999999999999888999875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.6
     Pex14_N  32 KGLtqeEIeeaLkra 46 
                 KGL++  I ++L+ a
  CDO71872.1 505 KGLRSSYIAQLLGYA 519
                 9**********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.54
# Mc/sec: 2996.32
//
Query:       CDO71873.1  [L=84]
Description: hypothetical protein BN946_scf184940.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   38.5   0.3    1.8e-09   38.2   0.3    1.2  1  HIT       HIT domain


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.3     1e-13   1.8e-09      41      95 ..       2      52 ..       1      55 [. 0.91

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1e-13
                GGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC CS
         HIT 41 hdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHvipr 95
                +++++e la++l ++kk+a+al+       ++++ nng+ a+q v+h+H+Hvip+
  CDO71873.1  2 DEVPDEYLAEILPIAKKIARALGV----VDYNILQNNGKIAHQHVFHVHFHVIPK 52
                57789999***************8....369***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 574.88
//
Query:       CDO71874.1  [L=261]
Description: hypothetical protein BN946_scf184940.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-90  302.5  11.0    3.2e-90  302.4  11.0    1.0  1  Per1      Per1-like family
  ------ inclusion threshold ------
        1.1    9.6   5.0       0.68   10.3   0.2    2.5  2  DUF2516   Protein of unknown function (DUF2516)


Domain annotation for each model (and alignments):
>> Per1  Per1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.4  11.0   3.5e-94   3.2e-90      33     255 .]       2     251 ..       1     251 [. 0.93

  Alignments for each domain:
  == domain 1  score: 302.4 bits;  conditional E-value: 3.5e-94
        Per1  33 evvqFhGKWpflrllgiqEpasvlfSllNllvhlkglkklrkeipkssplkkvylvyalvslnawvwSaiFHtrDveltEklDYfsAgavvlsglylav 131
                 +v+q++GKWpf+r++g+qEpasvlfS+ N+++h+ g +kl++++p+ +p+k+++lv+alv++nawvwS++FHtrD+++tEklDYfsA+a +l++ly++v
  CDO71874.1   2 RVQQYYGKWPFWRFMGMQEPASVLFSVFNFMAHAAGARKLKQHVPDGHPTKNYCLVFALVNMNAWVWSSVFHTRDLPITEKLDYFSAAAAILYALYYSV 100
                 589************************************************************************************************ PP

        Per1 132 vrlfrlarekkrvk.............llltalllalyllHvlyLllv.rfdYtYnmaanvvvgllqnllwlllsl........ktl......akklvs 202
                 +rlf+l++++++                ++t+++++++l H++yL+l+ rfdYtYnma+n+v+gl++nllwl++sl        + +       ++ ++
  CDO71874.1 101 IRLFHLYPTENSRLtavprslskaailIAWTIICACAFLSHISYLTLLpRFDYTYNMAFNLVIGLTHNLLWLCYSLpsrlsiirR-YsgrprsYRPAHA 198
                 *****99876655578999999999999********************9***************************776666550.1555544568889 PP

        Per1 203 lklillvlllllamllEllDFppllrllDAhalwhlaTipltvlwydflvkDa 255
                 +k+++++ll+++a++lEl+DFpp+ r++DAh+lwhlaT+p++v+wydflv+Da
  CDO71874.1 199 TKPAVFALLTTAATALELFDFPPWGRIIDAHSLWHLATVPIAVYWYDFLVQDA 251
                 9**************************************************96 PP

>> DUF2516  Protein of unknown function (DUF2516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.3     0.089     8e+02      44      59 ..     129     152 ..      81     178 .. 0.62
   2 ?   10.3   0.2   7.6e-05      0.68      26      81 ..     185     245 ..     162     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.089
     DUF2516  44 fWlailgvallvlll........g 59 
                 +W++i + a l  +          
  CDO71874.1 129 AWTIICACAFLSHISyltllprfD 152
                 588888887776555445555553 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.6e-05
     DUF2516  26 alrrradaFeaagkrtKpfWlailgvallvlll.....glfgalsllgliavvaalvYlvD 81 
                     r++ ++ a   +  + ++++ +a+++ l+     g     + l+ +a v ++vY++D
  CDO71874.1 185 RYSGRPRSYRPAHATKPAVFALLTTAATALELFdfppwGRIIDAHSLWHLATVPIAVYWYD 245
                 55667788888887777788899999999999999999777888889*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1905.88
//
Query:       CDO71875.1  [L=517]
Description: hypothetical protein BN946_scf184940.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-81  273.0   0.1    4.3e-81  272.7   0.1    1.1  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.7   0.1   2.4e-85   4.3e-81       4     307 .]       2     292 ..       1     292 [. 0.94

  Alignments for each domain:
  == domain 1  score: 272.7 bits;  conditional E-value: 2.4e-85
                    GTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   4 npkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgavl 99 
                    +p+Rl  ++++l   +gl ++ + + +p++at++el+++H+ +Y+e+l++++ + +++    ++    i++ +  +d+p++ ++++ +++ +g++l
     CDO71875.1   2 KPHRLT-LTNALVLGYGLDKQIHNIYSPRPATQAELEAYHDHDYIEFLSRVTPHNQAEM---KQM---IDQFNCVEDCPIFADMYEFCRMYAGSSL 90 
                    688999.88999999999988889*************************9997766655...222...333234577******************* PP

                    HHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTTSS- CS
                    xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 100 eavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyPgtg 194
                    +a+++++ g  +++++++  ++ HHak+ easGFC+vN++++ai +l +   ++rv+++D+D+HhG+G+e afy++++v+t+S+H+y+g f+Pgtg
     CDO71875.1  91 AAARKLCAG--TTDIAINwSGGLHHAKKAEASGFCYVNDIVLAILELLR--YHPRVLYIDIDIHHGDGVEFAFYHTNRVMTVSFHKYTGDFFPGTG 182
                    *******99..9***********************************99..347****************************************** PP

                    -TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.EEEEE-S- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 195 aledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkvvllleGG 290
                    +l+d g+g gk+f lnvpl++g++d+ yl++f++++++ + +f+P +i++++G+D+l  d+lg +nls+  ++e+++ ++++     ++++l++GG
     CDO71875.1 183 KLDDNGTGLGKHFCLNVPLKDGIDDDMYLTIFKTVIEDTVTAFRPTAIVLQCGADSLGCDRLGAFNLSIAAHGECVNFVRKFNV---PLLVLGGGG 275
                    **********************************************************************************98...99******* PP

                    --HHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 291 Ynlealaravtavlsal 307
                    Y++++++r++t+ +s+l
     CDO71875.1 276 YTIKNVSRCWTYETSVL 292
                    ************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3700.33
//
Query:       CDO71876.1  [L=528]
Description: hypothetical protein BN946_scf184940.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-29  100.5  28.4    1.3e-20   74.0  10.2    3.9  4  MgtE             Divalent cation transporter
  ------ inclusion threshold ------
      0.022   14.3   0.1      0.022   14.3   0.1    2.4  2  DUF1129          Protein of unknown function (DUF1129)
        1.2    9.3   8.5       0.35   11.0   2.0    3.2  3  Phage_holin_3_3  LydA holin phage, holin superfamily III


Domain annotation for each model (and alignments):
>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.4     6e-11   3.6e-07       1      63 [.     143     207 ..     143     219 .. 0.89
   2 !    8.0   0.4    0.0006       3.6     102     122 ..     274     294 ..     269     296 .. 0.95
   3 ?   -0.8   0.3      0.32   1.9e+03      45      64 ..     312     342 ..     295     371 .. 0.46
   4 !   74.0  10.2   2.3e-24   1.3e-20       3     123 ..     375     509 ..     373     510 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 6e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSS-GG..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        MgtE   1 iPvilglgGnlgaqlasristalhlgelekk..lkkvllkelrvvlllgvilgllifllalllgw 63 
                 iPv+l+l+Gnl++ l++r+ ta ++g+l++    ++++l +l +++++++i++++++ + +l++ 
  CDO71876.1 143 IPVVLNLKGNLEMNLSARLGTAANMGDLDHPskRRSIILGNLSLLQVQATIVSFVAACVSFLMSR 207
                 7***************************766678***********************99888655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0006
                 GGGSHHHHHHHHHHHHHHHHH CS
        MgtE 102 PdnaaiPlltalgDllgtlll 122
                 Pdn+a P+ + lgDl++++ll
  CDO71876.1 274 PDNIAPPVAACLGDLVTLSLL 294
                 9*****************998 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHT-.................. CS
        MgtE  45 llgvilgllifllalllgw.................s 64 
                 ++ ++l++++      +gw                 +
  CDO71876.1 312 IITIVLAAAA------VGWayvthrnehvkhllkegW 342
                 2222222222......222223333444444444332 PP

  == domain 4  score: 74.0 bits;  conditional E-value: 2.3e-24
                 HHHHHHHHHHHHHHHHHHHHHH............TTSS-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHT-.CTSHHHHHHHHHHHHHHHHHH... CS
        MgtE   3 vilglgGnlgaqlasristalh............lgelekklkkvllkelrvvlllgvilgllifllal.llgwslllalvvglalvlvllaaall.il 87 
                 vi+gl+G + ++++sr+stalh            +++++++  +   + +++ l+   +++ +ifl a+ llgw +l +l++ l ++++l+a +++  +
  CDO71876.1 375 VIAGLPGGVSSIFVSRLSTALHaattkasslvsaVQDIQHDKHHPSPRLVMMTLIAVSLPVEIIFLTAVsLLGWIHLPLLFIVLQVLFFLVAITISlSV 473
                 89********************77666666655544443333334444455566666667777777744379999999999999999999999999999 PP

                 HHHHHHHHHHTTS-GGGSHHHHHHHHHHHHHHHHHH CS
        MgtE  88 gvllplllwklglDPdnaaiPlltalgDllgtlllv 123
                 + +++ llwk+glDPd++a+P+ +al+Dl+g+lllv
  CDO71876.1 474 ARITTTLLWKRGLDPDMYALPFQSALTDLVGQLLLV 509
                 99999*****************************98 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.7e-06     0.022     151     204 ..     282     335 ..     259     337 .. 0.89
   2 ?   -3.9   3.6       1.4   8.1e+03     171     171 ..     446     446 ..     345     483 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-06
     DUF1129 151 lilllllvvwlvlftlvallpaviNpvLpplvliiigviafvvryylkkkyniq 204
                 ++ l+ lv + +l ++ +ll  v+N  +p +++i+++++a++  y+  +  +++
  CDO71876.1 282 AACLGDLVTLSLLGVISQLLLYVLNTPIPLIITIVLAAAAVGWAYVTHRNEHVK 335
                 566777899999999*******************************99988876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.4
     DUF1129 171 p 171
                  
  CDO71876.1 446 L 446
                 1 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.29   1.7e+03      55      67 ..     202     214 ..     174     220 .. 0.62
   2 ?    1.6   0.5     0.052   3.1e+02      28      70 ..     281     323 ..     270     327 .. 0.86
   3 ?   11.0   2.0   5.9e-05      0.35       2      67 ..     314     381 ..     313     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.29
  Phage_holin_3_3  55 sqlltlaiaglsG 67 
                      s+l++ ++++ +G
       CDO71876.1 202 SFLMSRIVSATAG 214
                      3333333333333 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.052
  Phage_holin_3_3  28 ikellleivvSgfvGllvfllceelglsqlltlaiaglsGylG 70 
                      +  +l+++v+  + G++  ll+  l+ + +l + i+ +++++G
       CDO71876.1 281 VAACLGDLVTLSLLGVISQLLLYVLNTPIPLIITIVLAAAAVG 323
                      6679999********************9999888887777766 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 5.9e-05
  Phage_holin_3_3   2 liivlAllGGlvsylmrakkg..rrrfsikellleivvSgfvGllvfllceelglsqlltlaiaglsG 67 
                      +i++ A++ G +   +r ++     ++ ++ l++ + +S  +G+++  ++e ++  +ll+++iagl G
       CDO71876.1 314 TIVLAAAAVGWAYVTHRNEHVkhLLKEGWSPLFVAMAISSGTGIVLDTFVERYSGFALLAVVIAGLPG 381
                      6888888889888888888853466777888**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3650.14
//
Query:       CDO71877.1  [L=622]
Description: hypothetical protein BN946_scf184940.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-26   92.1   0.3    3.1e-26   92.1   0.3    2.2  3  Ada3         Histone acetyltransferases subunit 3
  ------ inclusion threshold ------
        2.2    7.8   8.0       0.19   11.2   0.7    2.1  2  Mu-like_Pro  Mu-like prophage I protein
        2.5    6.5   4.1       0.87    8.0   0.3    1.9  2  Herpes_UL25  Herpesvirus UL25 family


Domain annotation for each model (and alignments):
>> Ada3  Histone acetyltransferases subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       0.7   4.2e+03     125     132 .]      63      70 ..      32      92 .. 0.61
   2 ?   -3.7   0.8       2.1   1.2e+04      96     105 ..     135     144 ..     129     155 .. 0.57
   3 !   92.1   0.3   5.2e-30   3.1e-26       2     121 ..     385     503 ..     384     509 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.7
        Ada3 125 alralmer 132
                 ++r l+e+
  CDO71877.1  63 SMRRLKEK 70 
                 33333332 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.1
        Ada3  96 tlkkkkkkkr 105
                 +lkkk+kkkr
  CDO71877.1 135 ELKKKNKKKR 144
                 4445555544 PP

  == domain 3  score: 92.1 bits;  conditional E-value: 5.2e-30
        Ada3   2 dyaqleeRlkqELreiGilepeedadkydgredDevaaeLrrlqaeLrevsliNgarkarLlelvkermayqeyqtiledlDkqvqqaYlK..rtrtlk 98 
                 ++a+le+R+++ +r +G+l  +e +d y++  dD +a+ Lr+ q+eLr+v ++N+ar+arL+ ++++r+ayqey +  e lDk+++  Y K  ++  +k
  CDO71877.1 385 NVADLEDRMRKVMRFHGLL--DEIPD-YSDAVDDPIATALRHAQRELRTVLATNKARRARLAAIAEDRLAYQEYVEGREALDKNITTLYSKlqKKDGPK 480
                 7889***************..66676.99**************************************************************65444677 PP

        Ada3  99 kkkkkkrsgaaaaaaaagaarpg 121
                  +kkkk++g+ ++++a+ga+  g
  CDO71877.1 481 AHKKKKQKGDYHSGSANGASATG 503
                 77777666665555555554444 PP

>> Mu-like_Pro  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.3     0.076   4.6e+02     122     257 ..      28      91 ..      22     163 .. 0.43
   2 ?   11.2   0.7   3.2e-05      0.19     144     322 ..     333     520 ..     314     523 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.076
  Mu-like_Pro 122 aldgmeelaalaaateqeeekekeeekellkkllaaLgleedateeqilaalkalkeekaavaealglkagaktaeasaevaaLsakavDlakyvpve 219
                  a d +e+l a  +a +q+  +  +++                                                                       +
   CDO71877.1  28 ATDELEQLHAELTAFKQKSLERARKAG----------------------------------------------------------------------D 55 
                  333333333333333333333333333......................................................................3 PP

  Mu-like_Pro 220 aaqalqaelaalkakiaekeaealiekAlkeGkltpal 257
                  ++ a+++++  lk+k++ k  +++++kA +e+  tp+ 
   CDO71877.1  56 DMRAIEESMRRLKEKEKGK--AKALQKAERERGYTPSV 91 
                  3444444444444433322..23334444443333333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.2e-05
  Mu-like_Pro 144 keeekellkkllaaLgleedateeq.ilaalkalkeek.......aavaealglkagaktaeasaevaaLsakavDlakyvpveaaqalqaelaalka 233
                  ++ + +l +++++aL    date + ++aa +a+++         aa++  l+++  ++   +  +++ L  + +D +  v+   a+al++   +l++
   CDO71877.1 333 ERGHGPLTERVVSALIPMHDATEWKgVKAAEEAMEGRPgtngaaaAAARDKLNVADLEDRMRKVMRFHGLLDEIPDYSDAVDDPIATALRHAQRELRT 430
                  33344899999999999999999883444445555444877765555555666666666666666667776666************************ PP

  Mu-like_Pro 234 kiaekeaealiekAlkeGkltpalkdwaralakkdlaalkaflekapkiaalsalqtkkkapkk.eakkeaaLsaeekavakqlGiseee 322
                    a+++a ++  +A++e +l+ ++    r+   k++++l + l+k+    a++++++k++  +  ++  +a+ +a+     ++lG+++++
   CDO71877.1 431 VLATNKARRARLAAIAEDRLAYQEYVEGREALDKNITTLYSKLQKKDGPKAHKKKKQKGDYHSGsANGASATGTAALPPCPAALGLNPDD 520
                  ********************999999999999***************9999999888886655535555555566666666778887776 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3   0.00015      0.87      53     108 ..      34      90 ..      11     133 .. 0.75
   2 ?   -0.8   0.3     0.069   4.2e+02      37     111 ..     421     500 ..     411     526 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00015
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS
  Herpes_UL25  53 alraeLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaar.pplsps 108
                   l+aeL   +qk +++a+++ ++++++Ee + ++ e e+ +a+  ++a+r +   ps
   CDO71877.1  34 QLHAELTAFKQKSLERARKAGDDMRAIEESMRRLKEKEKGKAKALQKAEReRGYTPS 90 
                  69******************************9999944444444444433222222 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.069
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_UL25  37 leasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiael......eaaaaaeeaaaarpplspssas 111
                  l+ +++e+++  + ++a ra L  +a++ +a+ e +e+r ++++++++ +          +a+++++++      s++ as
   CDO71877.1 421 LRHAQRELRTVLATNKARRARLAAIAEDRLAYQEYVEGR-EALDKNITTLYSKlqkkdgPKAHKKKKQKGDYHSGSANGAS 500
                  444555666666666666666666666666666666665.44444444333332221222333333333332333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1198  (0.0668191); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4249.94
//
Query:       CDO71878.1  [L=274]
Description: hypothetical protein BN946_scf184940.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-26   92.8   3.6    2.9e-26   92.8   3.6    2.1  2  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   4.0    0.0055        99     170     187 ..      20      37 ..       2      58 .. 0.55
   2 !   92.8   3.6   1.6e-30   2.9e-26       2     175 ..      81     270 ..      80     274 .] 0.72

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0055
                   XXXXXXXXXXXXXXXX.. CS
  RNA_polI_A34 170 pkkkkkkkkkkkekkeee 187
                    kk+k+k+kk+ke++ ++
    CDO71878.1  20 AKKSKSKQKKTKEAQAAS 37 
                   344444455555444333 PP

  == domain 2  score: 92.8 bits;  conditional E-value: 1.6e-30
                   TTEEEEEEEEETTS-GGG-S..EE---S...SCSEEEE.EETTEEEEEEEGGG..CS-GTTEEE.....EEE-SSSTB-TTSS.-B-SEEEEEEE-- CS
  RNA_polI_A34   2 egkelWlIkaPasvpikslegvevplsg...vqtgksvlshkgqdYgiledsd..eeekggerl.....Llpdkkkdgyelaa.kpisrtlnisevv 87 
                   ++ elW+ ++P+++++k leg ++ ls     + +   +++k+ +Y+++  ++  ++++gge+l     Llp++k+ g+ + a kpisr l is+ +
    CDO71878.1  81 DNLELWVVRVPEGLKPKYLEGAKLELSApssNTARIGSIERKSMTYDVWNLGEdeADTIGGEELrgvsaLLPRSKNGGKLYQApKPISRRLVISARP 177
                   5669********************999865544444456***********9997633366666666666********9999988************* PP

                   XXXXXXXXXX.....XXXXXXXXX.XXX.XXXXXXXXXXXX..XXXXX............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
  RNA_polI_A34  88 qlpstdaepaas...vvpkpprpq.pkg.LkmRFkPfGsgd..gppgtigssseesegekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkk 175
                    lp+ +++p+as   + ++pprp+ pk+ L++RF P Gs +  ++ + ++ + ++ +  k+kk++ ka+  + +  kkk+++    e+ +k+kk 
    CDO71878.1 178 TLPTPQTTPEASpvvSHQNPPRPKyPKElLTHRFIPLGSLApvEDDAAMDVDVSAVSPTKSKKETAKAAVGDGESPKKKRKTGG--ESPKKPKKN 270
                   ******999999999999**********************75544444444444433333333333333333333333333333..333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1876.43
//
Query:       CDO71879.1  [L=192]
Description: hypothetical protein BN946_scf184940.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   28.5   1.8    4.8e-06   27.2   1.8    1.6  1  DUF1691    Protein of unknown function (DUF1691)
  ------ inclusion threshold ------
        8.2    6.4   8.1         14    5.7   0.0    3.1  3  UCR_6-4kD  Ubiquinol-cytochrome C reductase complex, 6.4kD pr


Domain annotation for each model (and alignments):
>> DUF1691  Protein of unknown function (DUF1691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   1.8   5.4e-10   4.8e-06       3      87 ..      63     156 ..      61     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.4e-10
     DUF1691   3 lglHvlvnrivPl......lvgdsskvgllyvahglarspplslleyaaLvgsgvlHivsGla.kwlgllrilkki.........kkkkrrrrwliing 85 
                 ++lH+++ r+ P+      ++++ s+ +  yv+ +l++ p+ s+l+y+ L +++++H + G+a  w         +           k++r +w +  g
  CDO71879.1  63 VALHYFTHRVAPAdpsppiYSVGPSELDYEYVKYALQEWPWRSWLAYIGLTAIVAWHAAEGMAiVWNT-------WlrprlggmpGTKRSRTTWALAAG 154
                 57788888887642222214578899999********************************9923444.......333344566554555555555445 PP

     DUF1691  86 ia 87 
                 + 
  CDO71879.1 155 VL 156
                 44 PP

>> UCR_6-4kD  Ubiquinol-cytochrome C reductase complex, 6.4kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0015        14       4      36 ..      38      69 ..      36      71 .. 0.78
   2 ?    3.4   1.4    0.0081        72      20      36 ..     114     130 ..     107     133 .. 0.89
   3 ?   -2.7   0.1      0.66   5.9e+03      22      31 ..     147     156 ..     144     167 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0015
                GG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   UCR_6-4kD  4 rllGpkyaelaknwvpsavawgavggvalvylt 36
                r+l pk  + +++ v s++ ++a+ +val y+t
  CDO71879.1 38 RILSPKASRRLTS-VLSVTGYTAAISVALHYFT 69
                6666666666665.77899*************9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0081
                 HHHHHHHHHHHHHHHHC CS
   UCR_6-4kD  20 savawgavggvalvylt 36 
                  +vaw a+ g+a+v+ t
  CDO71879.1 114 AIVAWHAAEGMAIVWNT 130
                 6799***********98 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.66
                 HHHHHHHHHH CS
   UCR_6-4kD  22 vawgavggva 31 
                 ++w+ ++gv+
  CDO71879.1 147 TTWALAAGVL 156
                 5666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1329.43
//
Query:       CDO71880.1  [L=635]
Description: hypothetical protein BN946_scf184940.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-13   49.8   0.6    6.4e-13   48.9   0.6    1.5  1  HMG_box    HMG (high mobility group) box
    8.4e-05   23.1   0.4    0.00017   22.1   0.4    1.5  1  HMG_box_2  HMG-box domain
  ------ inclusion threshold ------
      0.082   12.9   0.4       0.16   12.0   0.4    1.4  1  COX4       Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.6   1.1e-16   6.4e-13       2      68 ..     134     202 ..     133     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.1e-16
                 -SS--HHHHHHHHHHHHHHHHS..TTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqraklkaen..PelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 +Rp++af+lf+ +  +k k e+  ++ + + +sk++g+ Wkalse++Kk+++e +++e  ++ +++p+y
  CDO71880.1 134 PRPPNAFILFRCDYVEKHKGEHdaSDPESKTLSKRAGDAWKALSESDKKPWFELSKEEAMKHAAANPNY 202
                 7*******************9944555699**************************************9 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   2.9e-08   0.00017       6      62 ..     135     192 ..     131     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.9e-08
                 SS--HHHHHHHTTHHHHHHHT--..-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHH CS
   HMG_box_2   6 aarnAYalfvqemipelkrkGnp..viglaevsklcsekWkalseeeKekYeekAkedk 62 
                 +++nA++lf  +  +++k +  +   ++ +  sk +++ Wkalse++K+++ e  ke  
  CDO71880.1 135 RPPNAFILFRCDYVEKHKGE-HDasDPESKTLSKRAGDAWKALSESDKKPWFELSKEEA 192
                 689***************99.55578999**********************99999865 PP

>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   2.7e-05      0.16      24      50 ..     168     194 ..     154     215 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
        COX4  24 eqseeikaLkekekgdWkeLsleEkka 50 
                    + +kaL e  k++W eLs+eE ++
  CDO71880.1 168 RAGDAWKALSESDKKPWFELSKEEAMK 194
                 556889*****************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4334.31
//
Query:       CDO71881.1  [L=255]
Description: hypothetical protein BN946_scf184940.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.07   12.9   0.1       0.13   12.0   0.1    1.4  1  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr
       0.11   12.2   0.0       0.16   11.7   0.0    1.3  1  RSN1_TM       Late exocytosis, associated with Golgi transpor


Domain annotation for each model (and alignments):
>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.5e-05      0.13     117     164 ..      28      96 ..       2     118 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
  Trp_oprn_chp 117 a......wpvlalaggvllllagvllllrarswpamssrYerpaarraeaeae...................d 164
                   a      + v++la+  l+++ g+++llr ++ +a ++r +r++ar+     +                    
    CDO71881.1  28 AsfggfiALVVVLAAIFLIACVGIFILLRDHEPTAYERRQRRARAREH----DfsteapvgppglrerlarlF 96 
                   2456666778888999999999*******9877774444444444433....333346666666666666552 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05      0.16       6      43 ..      38      75 ..      33     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.8e-05
     RSN1_TM  6 lvinlvlalvflllFlilRkknkrvYaprtylkg..eeer 43
                +v+++++ ++++ +F++lR   +  Y+ r+  ++  e  +
  CDO71881.1 38 VVLAAIFLIACVGIFILLRDHEPTAYERRQRRARarE--H 75
                6788899999*******************99876432..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1776.75
//
Query:       CDO71882.1  [L=361]
Description: hypothetical protein BN946_scf184940.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-29   99.5   2.9    1.7e-28   98.7   2.9    1.5  1  ADH_N          Alcohol dehydrogenase GroES-like domain
    6.2e-17   61.8   0.0    1.1e-16   61.0   0.0    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    4.1e-07   31.1   0.0    7.2e-07   30.3   0.0    1.4  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
      3e-05   23.4   0.0    4.9e-05   22.7   0.0    1.2  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    0.00012   21.5   0.4    0.00021   20.7   0.4    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.011   15.9   0.1      0.016   15.4   0.1    1.2  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
      0.071   12.7   0.0       0.11   12.1   0.0    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
       0.34   11.4   1.3       0.89   10.0   0.0    2.1  2  DUF983         Protein of unknown function (DUF983)


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   2.9   7.5e-32   1.7e-28       2     109 .]      36     150 ..      35     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 7.5e-32
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.......TTBEETTTSS- CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlC.......eeakllgvsld 92 
                 ++v + ++ +g+CgsDlh+l+g  + +++lpli+GHEivG+v  vg++vk++kvGdrV v ++i  c +C+aC++++en+C       +++   gv+++
  CDO71882.1  36 EDVEVAITHCGVCGSDLHTLTG-GWGPANLPLIVGHEIVGKVTRVGEKVKDIKVGDRVGVGAQIGsCLNCRACNDNYENYCpgmihtyNHQYPDGVKTQ 133
                 79********************.6************************************998877***************9999888888888888** PP

                 SSSBSEEEECGGGEEEE CS
       ADH_N  93 Ggfaeyvvvpekklvkl 109
                 Gg+a+ + ++e++++++
  CDO71882.1 134 GGYATGIRAHERFVFPI 150
                 ***********999875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   4.9e-20   1.1e-16       1     129 [.     191     319 ..     191     320 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 4.9e-20
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSC...SHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvG...sgatleaalkllkpgGrlvvvGggkgeee 96 
                 g+G++av +Aka+Gaev a  +  +k+e +kk+Gad+v+++   ++  ++k+l     +d+++ +v     g +l++ l++l  +G+  +vG++  +e+
  CDO71882.1 191 GLGHYAVLFAKAMGAEVWAFTRGTKKAEDVKKMGADHVVDT---TVHGYWKDLQ--MTFDIIISTVDhfpPGVSLRDILSMLYVHGKYITVGLPDVDEP 284
                 89***************************************...89*******9..59***88776633379*********************877777 PP

                 ...EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 ...fdlrnlllkeksilGsllgslreefkealdlla 129
                    + + +++++   i Gs++gs + ++ e+l+l+a
  CDO71882.1 285 lpsIHPLDITANGCLIGGSHVGS-KVDMMEMLQLAA 319
                 66888888***************.889999999976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   3.2e-10   7.2e-07       1     128 [.     223     348 ..     223     353 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.2e-10
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-H....HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.....-HH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvg....gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas....aqad 88 
                   +GAd+v+d +    + +++ +  +D+++ tv+    g +l +++l++l  +G+++++g p + + l+       +++  +        +     + d
    CDO71882.1 223 MGADHVVDTTvHGYW-KDL-QMTFDIIISTVDhfppGVSL-RDILSMLYVHGKYITVGLPDVDEPLPSIHPLDITANGCLIG------GshvgSKVD 310
                   59********66666.466.456************88888.*******888*******754222222222222222222222......234544677 PP

                   HHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--S CS
  ADH_zinc_N_2  89 ileelaalieeGklrpvvdrvfpleeaaeAhrylesgrar 128
                    + e+++l +++ ++p ++ ++p++ea +A++ +++g++r
    CDO71882.1 311 -MMEMLQLAADKGIKPWIE-ELPMKEAGKALEGVKAGKVR 348
                   .9****************9.7***************9987 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.2e-08   4.9e-05      29      99 ..     182     251 ..     166     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHH.HHHHHHHHHH-SEEEE-- CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksq.eellaeavkeadvvigtv 99 
                   kv viG G  G  A+  ak++ga+V ++   ++++e ++++ga   +v+  + +   ++   + d++i+tv
   CDO71882.1 182 KKVGVIGIGGLGHYAVLFAKAMGAEVWAFTRGTKKAEDVKKMGAD--HVVDTTvHGYWKDLQMTFDIIISTV 251
                  4799*****************************************..555555055556666678****998 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.4   9.2e-08   0.00021      36      81 ..     181     226 ..     178     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.2e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgve 81 
                   gk+vG+iG+G +G+ +   +ka+g++v a+ r  kk e+++++g++
    CDO71882.1 181 GKKVGVIGIGGLGHYAVLFAKAMGAEVWAFTRGTKKAEDVKKMGAD 226
                   89*******************************9999988888874 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   7.2e-06     0.016       1      64 [.     183     252 ..     183     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......EEE-SSHHHHHHHCSEEEE-SS CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg......akaaesieelvasldvvitmvk 64 
                    k+g+iG+G +G+  +l  ++ g +v ++ r ++k+e++ + g       +++   ++l  + d++i  v 
     CDO71882.1 183 KVGVIGIGGLGHYAVLFAKAMGAEVWAFTRGTKKAEDVKKMGadhvvdTTVHGYWKDLQMTFDIIISTVD 252
                    69**************************************996644444444444455555588887776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.1e-05      0.11       1      55 [.     184     239 ..     184     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEEC CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsr.rlealkknGlrltseggeeilrpp 55 
                 + ++G+G++G +     ak  ga+v+  +r+  ++e++kk G +   +++ +  +++
  CDO71882.1 184 VGVIGIGGLGHYAVL-FAKaMGAEVWAFTRGTkKAEDVKKMGADHVVDTTVHGYWKD 239
                 579*******97555.5555**********************987766655555555 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0004      0.89       9      41 ..      43      74 ..      41      84 .. 0.82
   2 ?   -1.4   0.6       1.4   3.2e+03      10      20 ..     103     113 ..     102     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
      DUF983  9 daCeaCgldlsharaddgPayfvilivghlvvp 41
                 +C +Cg dl+    + gPa +  livgh +v+
  CDO71882.1 43 THCGVCGSDLHTLTGGWGPANLP-LIVGHEIVG 74
                59******************986.566665554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
      DUF983  10 aCeaCgldlsh 20 
                 +C+aC+ +++ 
  CDO71882.1 103 NCRACNDNYEN 113
                 7*****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2561.27
//
Query:       CDO71883.1  [L=1204]
Description: hypothetical protein BN946_scf184940.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-47  160.9   2.0    2.3e-47  160.9   2.0    2.8  3  E1-E2_ATPase     E1-E2 ATPase
    5.1e-24   85.0  13.1    3.6e-18   65.9   1.2    3.8  4  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    5.3e-20   71.3   0.0    1.4e-19   70.0   0.0    1.7  1  Cation_ATPase    Cation transport ATPase (P-type)
    9.2e-18   65.3   0.1    1.4e-15   58.2   0.0    2.7  2  Hydrolase        haloacid dehalogenase-like hydrolase
    3.9e-15   55.3   0.0    1.1e-14   53.8   0.0    1.9  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00034   20.4   0.5      0.033   13.9   0.3    2.4  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   3.8e+02      94     155 ..     131     197 ..     126     201 .. 0.76
   2 !  160.9   2.0   7.5e-51   2.3e-47       2     180 ..     219     412 ..     218     413 .. 0.97
   3 ?   -2.7   0.1       1.2   3.5e+03      95     145 ..    1055    1105 ..    1041    1136 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
                   TTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.....HHHHHHHHHH CS
  E1-E2_ATPase  94 lgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.....eallralall 155
                   l++  + + ++ +kk+ l k  d l+ ++ ++ +++++l ++++ + +k+ +       +l a+a+l
    CDO71883.1 131 LSRYGQNILTPPKKKSALRKYWDCLMTMFNILLIIAGILEYILLGVDFKDNFpntylGGILIAVAFL 197
                   667777888888999***********99999999999988888888777777655555555555555 PP

  == domain 2  score: 160.9 bits;  conditional E-value: 7.5e-51
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-............G-TTEE-TT-EEEE-EEEEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek............ekgdmvfsGtvvvsgeakavV 85 
                   + pp+++ +rdgt+++i+a++lv GDivl+++gd+ paD +++ +s+ +vd+s+LTGEs+pve+            e+ + +f +t vv+ge  +vV
    CDO71883.1 219 MIPPSCHAVRDGTLMTIPAADLVKGDIVLVRSGDKTPADLILFASSDlKVDNSSLTGESEPVERfarpdgvasrpvEADNLLFNSTLVVNGEGWGVV 315
                   6899********************************************************************************************* PP

                   EE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT..HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  86 tatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla..eallralallvaaiPcaLplavplalalgarrlak 180
                   ++tg +t++g+ia+l+ +++ kk+pl  ++ +++ +++++++++a+++f++ +++  +    +++++a+++lva++P++Lp +v+l l+++a+r+a 
    CDO71883.1 316 VRTGDHTMIGQIAALTGSETGKKSPLALEIGRFVMMISAIAIVFAVVFFVVGITTAYKGKgeQTVTFAVSILVAFVPEGLPSVVTLLLSIAAKRMAA 412
                   **************************************************999966655566*********************************97 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.2
                    TTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT CS
  E1-E2_ATPase   95 gkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla 145 
                     k      +++ +  +  k++d l++  ++v l i+++ ++  + ++ + +
    CDO71883.1 1055 TKSSPDFTNSRGQVISASKQVDALAQAQSIVYLSIFIIQCFNVFAVKAKFR 1105
                    555555555566666777888888888888888888877766666555544 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.32   9.5e+02      87     145 ..     152     203 ..     109     220 .. 0.68
   2 ?    0.8   0.7      0.12   3.5e+02      55     101 ..     350     388 ..     324     393 .. 0.57
   3 !   23.5   0.1   1.2e-08   3.7e-05       1      41 [.     894     936 ..     894     949 .. 0.87
   4 !   65.9   1.2   1.2e-21   3.6e-18      40     179 ..     994    1170 ..     986    1173 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.32
  Cation_ATPase_C  87 snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyv 145
                      ++  +tm+ i l+++ i+ ++ l         f+  f n++l +++++ + l ++i  +
       CDO71883.1 152 WDCLMTMFNILLIIAGILEYILLGV------DFKDNFPNTYLGGILIAVAFLNAFI-EF 203
                      5566788888888888888888887......3445556755444444444444444.33 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
  Cation_ATPase_C  55 liqgllqalvtllvffltlllfgisekenklssnyaqtmaFitlvls 101
                      ++++  +a+v  +vff++    +++ k         qt++F + +l+
       CDO71883.1 350 MMIS-AIAIVFAVVFFVVGITTAYKGKG-------EQTVTFAVSILV 388
                      2222.23333333333333334455544.......677777776665 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 1.2e-08
  Cation_ATPase_C   1 plplsaiqiLwinLvtDllpalaLaleppe..kdimkrpPrkk 41 
                      plplsai+iL i+L+ +l+ al++a ++pe  +++m+  Prk+
       CDO71883.1 894 PLPLSAILILVIDLGFELFVALSFAWDQPEtkDGLMRMAPRKP 936
                      89***************************76589999999954 PP

  == domain 4  score: 65.9 bits;  conditional E-value: 1.2e-21
  Cation_ATPase_C   40 kkkepliskkmlrri.liqgllqalvtllvffltll.......................lfgisekenkls..................... 86  
                       +++e+l+++++l ++ l  gl+  + +l+++f+++l                       +                                
       CDO71883.1  994 SESETLVDGRLLSYAyLEAGLIEMAGGLVAYFVVFLkngftpgdlrraqsaltaspsitY----------Ftksspdftnsrgqvisaskqv 1075
                       6799********************************666666666666655555555551..........0444444445556666677777 PP

  Cation_ATPase_C   87 ..snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavf.gtaplsleewlialllalvvllv 175 
                          ++aq+++++++ ++q+fn+++++ + ++ f  +++  n++ + +il+ + l ++i+y+p+l+ vf gt  ls+  wli +++++++l++
       CDO71883.1 1076 daLAQAQSIVYLSIFIIQCFNVFAVKAKFRPPFG-KSIVGNYYNFAGILAGACLGMFIIYTPPLHVVFgGTDHLSPLYWLIPAAFGVLLLVW 1166
                       779************************9999999.9999*****************************7899******************** PP

  Cation_ATPase_C  176 delv 179 
                       + ++
       CDO71883.1 1167 ASIR 1170
                       9987 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   4.6e-23   1.4e-19       9      90 ..     517     599 ..     507     600 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 4.6e-23
  Cation_ATPase   9 sensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlkle.pekkvrlyvKGApeiilkrCth 90 
                    +++ + d++k+lG++tE+ L+++a k   + +e+++++++v+eipFnss+K+++v+++   +++ +++y+KGApe++l++C++
     CDO71883.1 517 RNDLPFDQRKILGDATETGLIRFAGKYITNWDEYQKQHPRVFEIPFNSSNKWALVIMEKPhSDGLLTAYIKGAPERVLAKCST 599
                    455577899************************************************99867777899*************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.1   1.2e+04      65     103 ..      39      82 ..      21     112 .. 0.59
   2 !   58.2   0.0   4.7e-19   1.4e-15      67     210 .]     578     805 ..     522     805 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
                 TTE........HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH CS
                 xxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  65 grg........ayaigkpewltaldippdlgaaigsaqsqgrtvall 103
                 g+g        +  + k+ew+++    ++l +a +++ +q + +a +
  CDO71883.1  39 GHGkaphglrpRGVEMKREWTQED---KELAEAGYEHLAQQKAHAQK 82 
                 444445555556666778888888...66666666666666666555 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 4.7e-19
                 E.....HHHHTHHHHHHHH...............HCHHHHHHHHHHHHHHCHHHHHH..........................TTHHHHHHHHHHTHHB CS
                 x.....xxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxx RF
   Hydrolase  67 g.....ayaigkpewltal...............dippdlgaaigsaqsqgrtvall..........................qaralavftiadplkv 119
                       ay +g pe + a                d+ +++++a +   s+g+ v+ +                          +   ++++ ++dp  +
  CDO71883.1 578 SdglltAYIKGAPERVLAKcstylkdgeelpitdDFREQYDKAYDYMASRGHRVIACaqkllkseiydasyefskadakypstDYCFCGLISLEDP--P 674
                 033444555555555555555555555555555678999999999999999999999999999999999999999999999998899*********..* PP

                 HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT..................GGGE.SEEEEHHCES.....................STTTSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxx.xxxxxxxxxx.....................xxxxxxxx RF
   Hydrolase 120 kpeaaeavasLkaagievvlltgdnpetaeraanqlG..................ddyf.daviasdiet.....................vakpspeg 178
                 k +++ea+ +L+ agi+v ++tgd+p+tae++a++++                  ++++ d v+a+ i++                     +a  sp++
  CDO71883.1 675 KHGVREAIGTLRLAGIKVMMVTGDHPKTAEAIARKINlvlgetketlckktgrpmEEIYdDEVDAVVIHGddidslqgwqwdqifskneivFARTSPQH 773
                 ***********************************998888998888877777774444444444444445545677777777766666666666**** PP

                 HHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 179 kvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 k++++++ q+ ++ v + GDgvnD++al++A+
  CDO71883.1 774 KLEIVKRAQALGHIVGVTGDGVNDSPALKKAD 805
                 *********77777****************98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   3.8e-18   1.1e-14       1      68 [.      95     169 ..      95     170 .. 0.88
   2 ?   -3.3   0.0       2.6   7.7e+03      36      52 ..     963     979 ..     962     980 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 3.8e-18
  Cation_ATPase_N   1 ehalsleevlekLetdl.......enGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                      eh+ls +e+ ++L t l       + GL+++ea++rl++yG N+l+++kkks+++k+++++   + ilL++a+++
       CDO71883.1  95 EHKLSFKELEAELVTALdpkdperSPGLSTDEAKARLSRYGQNILTPPKKKSALRKYWDCLMTMFNILLIIAGIL 169
                      58888888888885444555556699***********************************************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
  Cation_ATPase_N  36 Nelkekkkkslwvkllk 52 
                      Ne+ ++ ++s w+  lk
       CDO71883.1 963 NEIVQPSRVSRWMATLK 979
                      9***********98877 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.01        31      20      54 ..     678     712 ..     669     718 .. 0.90
   2 !   13.9   0.3   1.1e-05     0.033     209     247 ..     791     830 ..     776     838 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.01
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgl 54 
                   +eai  l+ +gikv+  TG ++++++ ++++++l
   CDO71883.1 678 VREAIGTLRLAGIKVMMVTGDHPKTAEAIARKINL 712
                  689***************************99986 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.1e-05
                  EESSGGGHHHHHHSSEEEEET.TS-HHHHHHSSEEE--GG CS
  Hydrolase_3 209 fGDgeNDieMLeaaglgvAmg.naseevkkaAdyvtksnn 247
                   GDg ND + L++a+lg+Am+ ++s+  k+aA+++  + n
   CDO71883.1 791 TGDGVNDSPALKKADLGIAMNiSGSDVSKEAANMILLDDN 830
                  6*******************95677777888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 8428.13
//
Query:       CDO71884.1  [L=163]
Description: hypothetical protein BN946_scf184940.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-15   57.8   0.1    1.6e-15   57.3   0.1    1.3  1  Cerato-platanin  Cerato-platanin


Domain annotation for each model (and alignments):
>> Cerato-platanin  Cerato-platanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   8.9e-20   1.6e-15      63     119 .]     108     163 .]      90     163 .] 0.91

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 8.9e-20
  Cerato-platanin  63 ykityngktiyvlaidaagaGfniakkamdeltngqaaelGrvdaeveevalsdcgl 119
                       +++y+ ++++vla+d+a++Gfn+a  am+ lt+gqa +lGr++a+ ++v++s+cgl
       CDO71884.1 108 VTVSYD-EAVNVLAVDHAQSGFNVALGAMNALTGGQARHLGRINATAKQVDKSKCGL 163
                      456665.689*********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1184.07
//
Query:       CDO71885.1  [L=690]
Description: Carbohydrate-Binding Module Family 21 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-28   97.5   0.0    8.6e-28   96.8   0.0    1.3  1  CBM_21    Carbohydrate/starch-binding module (family 21)
    4.7e-08   33.5   0.3    8.9e-08   32.6   0.3    1.4  1  CBM53     Starch/carbohydrate-binding module (family 53)


Domain annotation for each model (and alignments):
>> CBM_21  Carbohydrate/starch-binding module (family 21)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   9.6e-32   8.6e-28       5     112 ..     330     434 ..     327     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 9.6e-32
      CBM_21   5 qkvllerlelskdkkvlvGlvaVknlafeKavavrytldnWktilevpaeyvksaeeslkenntdrFkFkiklknllnse.kaklelcikYevneeeyW 102
                 ++  le l ls + ++l G+v+VknlafeK vavr+t+d+W+t++ev+a+y +    s +++ +drF F+i+l ++l+   +++l ++++Y+v ++e W
  CDO71885.1 330 TELALEALDLSPEGTALNGTVRVKNLAFEKWVAVRFTVDSWQTTSEVTARYSE----SIEGSVYDRFVFTIRLGDMLARIeEKTLFFALRYNVAGREIW 424
                 567899**********************************************9....699999**********99887652679*************** PP

      CBM_21 103 dnNegkNYev 112
                 dnN  +NY+v
  CDO71885.1 425 DNNGAENYRV 434
                 ********98 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.3   9.9e-12   8.9e-08       3      80 ..     355     435 ..     347     436 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 9.9e-12
       CBM53   3 vyYnkslakevtlhygfngWkssqdvamtksassgdseedwfeatvtvpkea.....seldfvfds..egeenWDNNngqnYkvp 80 
                 ++++k     v +++++++W+++++v++ +s+s ++s  d+f +t+ + +       ++l f++ +   g e WDNN+ +nY+v+
  CDO71885.1 355 LAFEKW----VAVRFTVDSWQTTSEVTARYSESIEGSVYDRFVFTIRLGDMLarieeKTLFFALRYnvAGREIWDNNGAENYRVT 435
                 444444....69*******************99999************9977788755588888337999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 5056.52
//
Query:       CDO71886.1  [L=292]
Description: hypothetical protein BN946_scf184940.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-29  102.8   0.3    6.6e-29  101.3   0.2    1.7  2  Glyoxalase_3  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.2   3.7e-33   6.6e-29       1     163 [.      10     194 ..      10     209 .. 0.83
   2 !    3.4   0.0    0.0042        75      73     167 ..     183     273 ..     170     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 3.7e-33
  Glyoxalase_3   1 lDHvvlavp..dleeaaarfarrlGftvtpggehpglgtaNalvmfgdg.YlEllavdpeapaperprlfgldrlakgeglhtlal.......rtdd 87 
                   lDH+v++ p  +le+ a+ f r+lGftvtpgg h+++ taNal+ f+dg YlEll + ++ pa +++ +     + k++g++++a+       +++d
    CDO71886.1  10 LDHIVHLSPpgTLEDSADAF-RKLGFTVTPGGTHADGQTANALIIFADGtYLELLHFTHAPPASTAHPW-----AHKPPGWIDYAFlgnagtpSVAD 100
                   8*******************.*************************8888******8777776444433.....4589********99998888888 PP

  Glyoxalase_3  88 idataarlraaGvd....eagrrvrpdggd.lrwrllfladealpa......egalPfliqwgasdpa........ladhpngalglaelviavs 163
                   + + +a+++  Gv     ++g+r+r d+g+ l+w ++++a  +  +      +g+lPf++   +++++        +a+h+++a+g+a +++ v 
    CDO71886.1 101 TINRRAAADGSGVRyapeVRGGRTRADDGRvLEWLITAPAPSEG-NgtrasaRGRLPFFCGDVTPREWrvpleprsNAEHASKARGVAYVKLLVL 194
                   88888888889998***9999***9999888********99533.2467889********6555555578999999999********99988764 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0042
  Glyoxalase_3  73 akgeglhtlalrtddidataarlra.aGvdeagrrvrpdggdlrwrllfladealpaegalPfliqwgas..dpaladhpngalglaelviavsdpe 166
                   a+g   ++l +  +++da a++l++  Gv    ++   +  ++ w+l + + +++p  +++P l+  +a+   ++     + ++g+ el +av+d+ 
    CDO71886.1 183 ARGVAYVKLLVLPSELDAYAKELTSvLGV----SPAASSASQVVWELERQPSDSQP--YQAPTLV-LNAAeeYEEEIYVRERGAGIYELGVAVEDAG 272
                   4677888999999999*****99974775....88888999999**9999998887..7999986.3333124445568888889999999998876 PP

  Glyoxalase_3 167 a 167
                   +
    CDO71886.1 273 K 273
                   5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2097.83
//
Query:       CDO71887.1  [L=531]
Description: hypothetical protein BN946_scf184940.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-16   58.8  17.6    1.8e-10   40.9   9.1    3.8  4  IBR           IBR domain, a half RING-finger domain
     0.0022   17.8   6.5     0.0022   17.8   6.5    5.3  5  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0026   17.6   5.0     0.0026   17.6   5.0    4.8  5  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   5.1       2.3   1.4e+04      43      56 ..     154     167 ..     138     178 .. 0.78
   2 ?   -1.4   0.3      0.48   2.9e+03      13      30 ..     173     191 ..     164     195 .. 0.64
   3 !   31.4   1.3   2.8e-11   1.7e-07       1      62 []     206     275 ..     206     275 .. 0.92
   4 !   40.9   9.1     3e-14   1.8e-10      15      57 ..     296     338 ..     283     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
         IBR  43 kCgfefCfnCkkew 56 
                 +C++ fC  C +e+
  CDO71887.1 154 RCQHVFCEPCWQEY 167
                 48888988886665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.48
         IBR  13 es.dpnlkwCprpdCeaii 30 
                 ++  + +  C   dC +i+
  CDO71887.1 173 KDeGQCTFRCMHGDCRTIV 191
                 4423446789999998886 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 2.8e-11
         IBR   1 ekyeklklkkslesdpnlkwCprpdCeaiieksegcks........vtCskCgfefCfnCkkew.HeglsC 62 
                 e+y +l +++++  +  l+ Cp p+C   ++ ++g++s        v+C   g+ fCf C+ +  H ++ C
  CDO71887.1 206 ERYRELVRQHYVGAHTHLRFCPHPGCTETVSCQAGTGSsllwgvptVKCG-QGHVFCFGCGMDSdHRPVIC 275
                 699********************************88889999999****.9*********7766888877 PP

  == domain 4  score: 40.9 bits;  conditional E-value: 3e-14
         IBR  15 dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkew..H 57 
                   n++ Cp  +Ce+ iek+ gc++++C++C+f+fC+ C+k+w  H
  CDO71887.1 296 RANTRTCP--KCENNIEKNGGCNRIHCRHCNFQFCWLCMKDWsaH 338
                 4689****..********************************666 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   6.5   3.7e-07    0.0022       2      32 ..     139     169 ..     138     178 .. 0.84
   2 ?   -0.5   1.2       0.2   1.2e+03      13      24 ..     177     188 ..     173     192 .. 0.82
   3 !    7.2   0.7   0.00078       4.7      16      30 ..     252     268 ..     245     275 .. 0.73
   4 ?    1.2   0.3     0.055   3.3e+02      29      40 .]     293     305 ..     291     305 .. 0.81
   5 ?   -1.1   6.0       0.3   1.8e+03      16      30 ..     321     335 ..     309     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.7e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLe 32 
                 C +C d    ++    C+HvfC+ C++++  
  CDO71887.1 139 CGVCCDDNPPAMFRLRCQHVFCEPCWQEYVA 169
                 9*****999777777************9765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.2
  zf-C3HC4_2  13 svvtpCgHvfCq 24 
                   ++ C H+ C+
  CDO71887.1 177 QCTFRCMHGDCR 188
                 56899****997 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00078
  zf-C3HC4_2  16 tpC..gHvfCqkCilrs 30 
                  +C  gHvfC  C + s
  CDO71887.1 252 VKCgqGHVFCFGCGMDS 268
                 566336*******9986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.055
  zf-C3HC4_2  29 rsLeekn.eCPlC 40 
                 ++++++   CP+C
  CDO71887.1 293 QWIRANTrTCPKC 305
                 677888889**** PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.3
  zf-C3HC4_2  16 tpCgHvfCqkCilrs 30 
                   C+ +fC  C++ +
  CDO71887.1 321 RHCNFQFCWLCMKDW 335
                 478889999999885 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   5.0   4.3e-07    0.0026       1      38 [.     139     178 ..     139     182 .. 0.86
   2 ?   -1.2   0.7      0.32   1.9e+03      12      23 ..     178     188 ..     171     189 .. 0.77
   3 ?    3.1   0.8     0.014        85      13      25 ..     250     264 ..     229     271 .. 0.67
   4 ?    3.4   0.4     0.012        72      28      41 .]     293     305 ..     291     305 .. 0.87
   5 ?   -4.0  14.6       2.4   1.4e+04       1      34 [.     302     339 ..     302     347 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.3e-07
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC..TSSB-- CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks..rkkvkC 38 
                 C +C++    ++  l C+H fC++C ++++ s  + + +C
  CDO71887.1 139 CGVCCDDNPPAMFRLRCQHVFCEPCWQEYVASkvKDEGQC 178
                 99****9999999*****************9766444446 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.32
                 E.E-TTS--B-C CS
    zf-C3HC4  12 nelleCkHsfCs 23 
                 + +  C+H  C+
  CDO71887.1 178 C-TFRCMHGDCR 188
                 4.789***9997 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.014
                 .E-TT..S--B-CHH CS
    zf-C3HC4  13 elleC..kHsfCskC 25 
                  + +C  +H fC+ C
  CDO71887.1 250 PTVKCgqGHVFCFGC 264
                 56777445******9 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.012
                 HHHHCTSSB--TTT CS
    zf-C3HC4  28 kilksrkkvkCPlC 41 
                 ++++  ++++CP+C
  CDO71887.1 293 QWIR-ANTRTCPKC 305
                 7888.8999***** PP

  == domain 5  score: -4.0 bits;  conditional E-value: 2.4
                 -TTT-S--SS-E......E-TTS--B-CHHHHHHHHCTS CS
    zf-C3HC4   1 CpiCleeakepn.....elleCkHsfCskCirkilksrk 34 
                 Cp C ++++++          C+ +fC  C++ +    +
  CDO71887.1 302 CPKCENNIEKNGgcnriHCRHCNFQFCWLCMKDWSAH-G 339
                 9999999999889955555566669********9884.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 3360.07
//
Query:       CDO71888.1  [L=614]
Description: hypothetical protein BN946_scf184940.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-43  143.8  19.8    1.6e-07   31.9   0.1    7.4  7  WD40           WD domain, G-beta repeat
    8.9e-22   77.2   0.1    5.6e-06   26.6   0.1    6.1  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.2e-07   31.0   0.7       0.13   11.2   0.1    4.1  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    1.5e-07   31.5   0.2     0.0011   18.9   0.0    2.6  2  eIF2A          Eukaryotic translation initiation factor eIF2A
     0.0003   20.0   0.0    0.00043   19.5   0.0    1.1  1  Coatomer_WDAD  Coatomer WD associated region
     0.0016   17.2   0.0        1.3    7.7   0.0    3.4  4  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
      0.039   12.0   0.0      0.061   11.3   0.0    1.2  1  IKI3           IKI3 family
      0.042   13.2   0.6        9.1    5.5   0.0    3.4  3  Nbas_N         Neuroblastoma-amplified sequence, N terminal
        0.1   11.6   0.0       0.17   10.9   0.0    1.2  1  Det1           De-etiolated protein 1 Det1


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0018       3.7      12      38 .]     135     165 ..     123     165 .. 0.79
   2 !   10.7   0.0   0.00041      0.82       5      35 ..     173     204 ..     169     207 .. 0.85
   3 !   31.9   0.1   8.2e-11   1.6e-07       2      38 .]     211     248 ..     210     248 .. 0.92
   4 !   31.4   0.2   1.1e-10   2.2e-07       5      38 .]     256     290 ..     252     290 .. 0.92
   5 !   29.2   0.0   5.7e-10   1.1e-06       4      38 .]     297     332 ..     294     332 .. 0.89
   6 !   21.4   0.1   1.6e-07   0.00032       2      38 .]     337     374 ..     336     374 .. 0.92
   7 !   19.3   0.9   7.8e-07    0.0015       8      37 ..     398     429 ..     393     430 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
                 S....EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s....vtslafspdgawlasGsdDgtvriWd 38 
                      v+++ + p+ + +++Gs  g   +W+
  CDO71888.1 135 KircpVNCVVWTPEARRILTGSTSGEFTLWN 165
                 14445****************9999999997 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00041
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvr 35 
                 ++l +H s v+ ++f ++ga+las++  g ++
  CDO71888.1 173 TILQAHdSAVRTMKFTHSGAFLASADQSGIIK 204
                 5789**777*************9988777776 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 8.2e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++l+ +tGH   +++l+fspd + +a++sdD t+riW+
  CDO71888.1 211 NNLTAWTGHrEAIRGLSFSPDDNRFATASDDSTIRIWS 248
                 5778899**888*************************5 PP

  == domain 4  score: 31.4 bits;  conditional E-value: 1.1e-10
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 rtl+GH  +v ++ ++p + +l+sGs+D+ +++Wd
  CDO71888.1 256 RTLSGHgWDVKCVEWHPTKGLLVSGSKDNMIKFWD 290
                 89****555*************************9 PP

  == domain 5  score: 29.2 bits;  conditional E-value: 5.7e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l tl  H + v +la+sp+g+++as+s+D+tvr++d
  CDO71888.1 297 LSTLHYHkNTVQALAWSPNGNLVASASRDQTVRVFD 332
                 5677779788************************98 PP

  == domain 6  score: 21.4 bits;  conditional E-value: 1.6e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + lr l+GH + v+s+ ++p ++ l+sG+  g +  Wd
  CDO71888.1 337 KELRLLKGHkKEVCSVTWHPFHPILVSGGSEGAILHWD 374
                 568889***888****************88*******8 PP

  == domain 7  score: 19.3 bits;  conditional E-value: 7.8e-07
                 E.SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 t.GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + +H s+v+s+ f+p g+ l+s+s D+t r+W
  CDO71888.1 398 SqAHdSNVWSVTFHPLGHILVSASNDHTTRFW 429
                 4489777************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.77   1.5e+03      34      64 ..     133     163 ..     125     169 .. 0.75
   2 !   10.0   0.0   0.00041      0.81      35      66 ..     176     207 ..     162     215 .. 0.85
   3 !   13.2   0.0   4.2e-05     0.084      36      71 ..     218     253 ..     209     261 .. 0.86
   4 !   16.0   0.0   5.7e-06     0.011      37      84 ..     261     307 ..     254     310 .. 0.90
   5 !   26.6   0.1   2.8e-09   5.6e-06      37      90 ..     303     355 ..     299     357 .. 0.94
   6 !    5.9   0.0    0.0081        16      35      63 ..     399     427 ..     394     434 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.77
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrl 64 
                  ++k    v+++ W p+ + +  +   ge  l
   CDO71888.1 133 TNKIRCPVNCVVWTPEARRILTGSTSGEFTL 163
                  4555677889999999998888888887766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00041
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +++ds vr +++ ++g +La a + g ++ ++
   CDO71888.1 176 QAHDSAVRTMKFTHSGAFLASADQSGIIKYFQ 207
                  4699***********************99775 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 4.2e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  ++ + +r+L+++pd++ +a a +d+++r+ + e+++
   CDO71888.1 218 GHREAIRGLSFSPDDNRFATASDDSTIRIWSFEEQR 253
                  47889**************************99876 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 5.7e-06
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  ++  v++++W+p   lL+ + +d+ +++ d  +g+ +++l++++++ v
   CDO71888.1 261 HGWDVKCVEWHPTKGLLVSGSKDNMIKFWDPRTGTALSTLHYHKNT-V 307
                  6778************************************999883.5 PP

  == domain 5  score: 26.6 bits;  conditional E-value: 2.8e-09
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++++v++LaW+p+g+l a a  d +vr++d+   k ++ l+ ++++ v++++W 
   CDO71888.1 303 HKNTVQALAWSPNGNLVASASRDQTVRVFDIRAMKELRLLKGHKKE-VCSVTWH 355
                  6789*************************************99995.******6 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0081
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevr 63 
                  +++ds+v s+ ++p g++L+ a +d + r
   CDO71888.1 399 QAHDSNVWSVTFHPLGHILVSASNDHTTR 427
                  6899******************9998876 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0015         3     185     220 ..     177     212 ..     168     222 .. 0.86
   2 !    7.2   0.0    0.0011       2.2     189     230 ..     222     263 ..     215     290 .. 0.73
   3 !   11.2   0.1   6.4e-05      0.13     187     233 ..     304     357 ..     263     364 .. 0.82
   4 ?    1.2   0.0     0.072   1.4e+02     180     214 ..     395     429 ..     368     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqvyled 220
                  ++s + +  f+  G+ la a + G++k+fq ++++
  CDO71888.1 177 AHDSAVRTMKFTHSGAFLASADQSGIIKYFQPNMNN 212
                 4668899999*********************99987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvyledeeeprCLheW 230
                  i   +fspd    atas d +++ +    + +e+    h W
  CDO71888.1 222 AIRGLSFSPDDNRFATASDDSTIRIWSFEEQRAERTLSGHGW 263
                 567779********************8765555333333444 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 6.4e-05
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvylede.......eeprCLheWkPh 233
                 + ++   a+sp+G  +a as d +v+ f +  ++e       +++ C   W+P 
  CDO71888.1 304 KNTVQALAWSPNGNLVASASRDQTVRVFDIRAMKElrllkghKKEVCSVTWHPF 357
                 34677889**********************877666777776888899999986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.072
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevkff 214
                 ++l   ++s++ + +f p G  l  as+d + +f+
  CDO71888.1 395 ATLSQAHDSNVWSVTFHPLGHILVSASNDHTTRFW 429
                 5566678899************************9 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00027      0.54      59     163 ..     137     240 ..     121     261 .. 0.63
   2 !   18.9   0.0   5.5e-07    0.0011      61     153 ..     264     356 ..     249     365 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEEC...SCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-.TT--EEEE-T CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdl...kvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaea.anatlvewsp 153
                   p+ +v W p++++  ++ G    + +l++    + + i + + ++  t++f  +g +++ a     +G ++ ++ +  +  a + + +    + +sp
  CDO71888.1 137 RCPVNCVVWTPEARR--ILTGSTSGEFTLWNGltfNFETILQAHDSAVRTMKFTHSGAFLASAD---QSGIIKYFQPNMNNLTAWTGHrEAIRGLSFSP 230
                 456777777777776..45777777777777655557777777777777777777777777774...34557777666444333333303445677777 PP

                 TSSEEEEEE- CS
       eIF2A 154 dgryvlTatt 163
                 d++ ++Ta+ 
  CDO71888.1 231 DDNRFATASD 240
                 7777777765 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.5e-07
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEE...EEE-TT--EEEE-T CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkia...kaeaanatlvewsp 153
                 ++++v+W p++   +++ G  ++ ++++d +   +  + +++++   ++ +sp+g+lv+ a   ++   + ++d   +k++      +++ + +v w+p
  CDO71888.1 264 DVKCVEWHPTK--GLLVSGSKDNMIKFWDPRtgtALSTLHYHKNTVQALAWSPNGNLVASASRDQT---VRVFDIRAMKELRllkGHKKEVC-SVTWHP 356
                 48999**9975..4789*************84323333444555556679***********98888...66666665555441103333333.456766 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.2e-07   0.00043      32     168 ..     179     328 ..     170     353 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.2e-07
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX..... CS
  Coatomer_WDAD  32 eiypqslshnpngrfvlVcgdgeyiiyt.....alalrnkaygkgldfvwvs.snrfavlessksvkifknfkekktksikleyqvdkifg..... 116
                    +  ++++++ ++g f++  +++ +i y      +l + +  +       +++  nrfa   + ++++i  +f+e+   + +l+    ++       
     CDO71888.1 179 DSAVRTMKFTHSGAFLASADQSGIIKYFqpnmnNLTAWTGHREAIRGLSFSPdDNRFATASDDSTIRI-WSFEEQRA-ERTLSGHGWDVKCvewhp 272
                    666888899999999888888888888844444222223333333345688899**************.88877763.333333333332234577 PP

                    ..XXXXXXXXXX.XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 117 ..GalLgvksegsvsfYDweqgklvrridvkk..vknVvwsddgelvalvskdtvy 168
                      G l   ++++++ f+D  +g+ ++ ++ +k  v+   ws++g+lva +s+d+++
     CDO71888.1 273 tkGLLVSGSKDNMIKFWDPRTGTALSTLHYHKntVQALAWSPNGNLVASASRDQTV 328
                    99***************************98668****************988875 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00066       1.3     191     239 ..     202     258 ..     141     261 .. 0.79
   2 ?    3.7   0.0      0.01        21     171     238 ..     264     340 ..     259     348 .. 0.71
   3 ?    1.3   0.0     0.057   1.1e+02     200     250 ..     345     394 ..     337     414 .. 0.77
   4 ?   -0.2   0.0      0.16   3.2e+02     198     228 ..     399     429 ..     386     436 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00066
                    SSS--G........----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EE CS
  Nucleoporin_N 191 lpgvls........gasereeivqlridssrrilytlsskgvirvydlsasngessl 239
                    + + ++        +   re+i  l  ++  ++  t+s +++ir++ ++ +  e++l
     CDO71888.1 202 IIKYFQpnmnnltaWTGHREAIRGLSFSPDDNRFATASDDSTIRIWSFEEQRAERTL 258
                    333333444446669999*****************************9965556665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.01
                    EEEEEEEEE-SSSS-....--SSS--G.........----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-E CS
  Nucleoporin_N 171 slkckkicltkggls.sllsilpgvls.........gasereeivqlridssrrilytlsskgvirvydlsasngess 238
                      kc +  +tkg+l  +    + +++           ++ ++++ +l+ ++  +++ ++s++ ++rv+d+  + +e +
     CDO71888.1 264 DVKCVEWHPTKGLLVsGSKDNMIKFWDprtgtalstLHYHKNTVQALAWSPNGNLVASASRDQTVRVFDIR-AMKELR 340
                    56677777777777755555555555567777777777888888889999999999999999999999998.555554 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.057
                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHH CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqill 250
                     ++e+++++ ++ + il++  s+g i  +dls s++e+  +++++ ++  +
     CDO71888.1 345 HKKEVCSVTWHPFHPILVSGGSEGAILHWDLS-SSSEPPATQSASHQPGPR 394
                    568999999999999*****************.666788888887777655 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.16
                    ---GG-EEEEEEECCTCEEEEEETTSEEEEE CS
  Nucleoporin_N 198 asereeivqlridssrrilytlsskgvirvy 228
                    +  ++ +++++ ++  +il+++s++++ r++
     CDO71888.1 399 QAHDSNVWSVTFHPLGHILVSASNDHTTRFW 429
                    5667889999999999**************9 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05     0.061     235     279 ..     283     328 ..     265     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
                 XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 235 rralrvye.regaLdsvsekvdgleeaLaWrPsGsliAstqrkkdk 279
                   +++ ++ r+g+  s+    +++ +aLaW P+G+l+As+ r++++
  CDO71888.1 283 DNMIKFWDpRTGTALSTLHYHKNTVQALAWSPNGNLVASASRDQTV 328
                 5678888757788778888889999****************97765 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   2.2e+02     206     257 ..     195     248 ..     101     270 .. 0.55
   2 ?    5.5   0.0    0.0045       9.1      47      73 ..     308     334 ..     301     344 .. 0.86
   3 ?    2.7   0.0     0.032        65     146     177 ..     345     378 ..     339     405 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
      Nbas_N 206 alakkrgllkl..lslklysrkaeekdgvfkmslspdgtllavihfsgklsiwd 257
                 a+a+++g++k   ++++  +  +  ++ +  +s+spd  ++a+      + iw+
  CDO71888.1 195 ASADQSGIIKYfqPNMNNLTAWTGHREAIRGLSFSPDDNRFATASDDSTIRIWS 248
                 234445555541133444444455566666667777777777666666666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0045
      Nbas_N  47 rrvawshdctllayaestgtvrvfdlv 73 
                 + +aws +  l+a a    tvrvfd+ 
  CDO71888.1 308 QALAWSPNGNLVASASRDQTVRVFDIR 334
                 568**********************85 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.032
      Nbas_N 146 yshgitaaiyhpahrlllvggcesa..dagvska 177
                 +++ + ++ +hp h +l+ gg e a    ++s +
  CDO71888.1 345 HKKEVCSVTWHPFHPILVSGGSEGAilHWDLSSS 378
                 5677899***************988444445444 PP

>> Det1  De-etiolated protein 1 Det1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.6e-05      0.17     355     395 ..     323     363 ..     315     364 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.6e-05
        Det1 355 srdsgllkFkikagaerkaseltarrlvaFifHPfePfaiS 395
                 srd+++  F+i+a  e +  + +++++++ ++HPf+P+ +S
  CDO71888.1 323 SRDQTVRVFDIRAMKELRLLKGHKKEVCSVTWHPFHPILVS 363
                 69999999********889999***************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 3838.31
//
Query:       CDO71889.1  [L=289]
Description: hypothetical protein BN946_scf184940.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-21   75.2   0.0    3.5e-13   49.5   0.0    2.1  2  Glycos_transf_1  Glycosyl transferases group 1
    1.1e-10   42.0   0.0    2.2e-07   31.4   0.0    2.2  2  Glyco_trans_1_4  Glycosyl transferases group 1
    6.4e-06   26.5   0.0    1.3e-05   25.5   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.073   13.0   0.1       0.12   12.3   0.1    1.3  1  TerB             Tellurite resistance protein TerB


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.5e-09   2.9e-05      13      76 ..      53     131 ..      45     140 .. 0.89
   2 !   49.5   0.0   7.7e-17   3.5e-13      65     172 .]     148     261 ..     143     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.5e-09
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCC.......HCSCEEEEEES.........STTHHHHHHHHHHHCTTCGGG CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkq.......lnpnvklviaG........ngeeekelkklaeelelsdnvi 76 
                      ++++++ls++r+e +K+  l+i++fall+++          +++lv+aG        n++ +++l + a+ ++l  +v+
       CDO71889.1  53 SDRPTLLSLNRFEQKKNAGLAIDSFALLRAKlasspgdHPRKLRLVLAGgydprlldNVKTLQSLLESAKRHGLTYKVT 131
                      57999*******************************977789***********99999999999999999998877775 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 7.7e-17
                      HHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS...BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTT....SEEEE-TT-HHHHHHH CS
  Glycos_transf_1  65 laeelelsdnviflgevsredleellknadifvlpsis...EgfGivllEAmaaglpviasnaggpaevvkdge....tGllvkpnnaealaea 151
                       +e++  + ++ fl + s  +  +ll++++ ++l   +   E+fGi ++E ma+glpv+a ++ggp e v+ +     tG+l  p+ ++ +aea
       CDO71889.1 148 NSEKAPQETDILFLLNFSIGQRSALLTSSSTLALLY-TpanEHFGIGPVEGMACGLPVLACDSGGPTESVVGAPvterTGWLRRPE-PKLWAEA 239
                      566677777777888888777788888855555442.2355*********************9999999988777999*******9.******* PP

                      HHHHHHSH.HHHHHHHHHHHHH CS
  Glycos_transf_1 152 irkllede.elrerlgenarkr 172
                      + ++ + + e+r +l e+ar+r
       CDO71889.1 240 LLEIFNLSeEERSQLAERARRR 261
                      *****999899*******9976 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00054       2.4       1      50 [.      55     111 ..      55     143 .. 0.71
   2 !   31.4   0.0   4.8e-11   2.2e-07      75     132 ..     181     244 ..     146     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00054
                      SEEEEEES---GG.GTHHHHHHHHHHHH.H...H.......EEEEEES---..HHHHHHH CS
  Glyco_trans_1_4   1 rpvilfvGrleenvkgvdllleavpllrkk...d.......vrlvivGdgprpeeleela 50 
                      rp++l + r+ e++k++ l ++ ++llr+k           +rlv++G+  +p +l + +
       CDO71889.1  55 RPTLLSLNRF-EQKKNAGLAIDSFALLRAKlasSpgdhprkLRLVLAGGY-DP-RLLDNV 111
                      6899999***.667**************55543134567789******65.33.332222 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 4.8e-11
                      EEEE--.---SHHHHHHHHTT-EEEE-TGGGTTT--.T.....TSSEE--TT-HHHHHHHHHHHH CS
  Glyco_trans_1_4  75 vfvaPs.egfglkllEamaaglpvVatdvggiaevv.g.....engllvppgdpealaeailrLl 132
                      ++  P  e fg+  +E ma+glpv a d gg+ e v g     ++g+l  p +p+ +aea+l+++
       CDO71889.1 181 LLYTPAnEHFGIGPVEGMACGLPVLACDSGGPTESVvGapvteRTGWLRRP-EPKLWAEALLEIF 244
                      22335589***********************99988854555599***987.6********9976 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.9e-09   1.3e-05      15      91 ..     194     276 ..     168     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.9e-09
  Glyco_trans_1_2  15 lfEaaacGafaltdda....egleelftpgkevilfe.dleelaekirylla.npeerraiaeaarervlaehtydhraeqll 91 
                       +E +acG ++l+ d+    e++     +++++ l + +++ +ae++ +  + ++eer+++ae+ar+r+++++ ++  a++l 
       CDO71889.1 194 PVEGMACGLPVLACDSggptESVVGAPVTERTGWLRRpEPKLWAEALLEIFNlSEEERSQLAERARRRAREKFGMEAMARDLE 276
                      68**************8888555556667778888779***********9999***********************9999875 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.8e-05      0.12      45      96 ..     229     280 ..     217     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
        TerB  45 sesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrkls 96 
                 ++ E +  +e l + f+ls+ee  +l+e++ +  +e++++e+++r l ++l+
  CDO71889.1 229 RRPEPKLWAEALLEIFNLSEEERSQLAERARRRAREKFGMEAMARDLEDALQ 280
                 5666666677777888*******************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2040.41
//
Query:       CDO71890.1  [L=183]
Description: hypothetical protein BN946_scf184940.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1350.09
//
Query:       CDO71891.1  [L=764]
Description: hypothetical protein BN946_scf184940.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.9e-140  467.6  41.8   3.8e-125  418.9  38.9    2.0  2  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1     9e-18   1.6e-13       2      67 ..      96     177 ..      95     182 .. 0.98
   2 !  418.9  38.9  2.1e-129  3.8e-125      97     616 .]     180     732 ..     178     732 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 9e-18
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk................lslnpgpftikE 67 
                 +T+R+++lG++++ lg+a+++++ +++ +v++s++++ ll +++g a+a++lp+                ++lnpg f ikE
  CDO71891.1  96 VTFRSLFLGTVFAGLGAALCQIYLFKPVQVQVSTVFLLLLIYSCGLAWAKYLPRaewvegtrfarlvpvlRFLNPGEFQIKE 177
                 8********************************************************************************9 PP

  == domain 2  score: 418.9 bits;  conditional E-value: 2.1e-129
         OPT  97 ygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwglfplylfpalssfswltwiap 195
                 y +++++ ++il ++s++++G+g++g+lR++ vyp++++++++l+t+ +++alh    ++ +rlk+f+ +f g+f+w+++p y+fp+l+++++++ + +
  CDO71891.1 180 YSTNVEATTAILATFSTACFGYGLVGLLRPLTVYPSEMVYWTNLPTVSIFQALHFDSASNHKRLKLFWSAFTGMFIWEVLPSYIFPLLNGINIVCLATQ 278
                 67788899****************************************************************************************999 PP

         OPT 196 knv.....vlanlf.......glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp.............ydvtei 269
                         v++nlf       glg+l l++dw++i+++    +  pl  ++n +iG+++++g ++++ yysn+w+++ +p             y++t +
  CDO71891.1 279 HVPsaaqdVITNLFggtdgneGLGFLSLSLDWQYITSTF---MSWPLIQQANSWIGYAVCYGAIMGI-YYSNVWNSKAFPmlstslysqngtrYNQTAV 373
                 75577788999999***********************99...*************************.******************************* PP

         OPT 270 ldedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlm.rkykdvpmwwylallvlslvigiivv 367
                 + +++ l++++ + +gl++l++++a++ l  + ai  li+ht+l++g  +++++k+a  + ++++d+h +++ ++y++vp+ wy+ llvls+ +g+iv+
  CDO71891.1 374 FGSKFQLNETALETIGLPALTGSNAWSNLCANLAIGGLIAHTVLFWGPYVWESFKQA--RAKSQPDPHWQIVnKNYEEVPWHWYFGLLVLSFFAGLIVI 470
                 *********************************************************..*******99887626799********************** PP

         OPT 368 ealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaql 466
                  +  t+lp++++++alll+++++ +s+++++ +g   ++++++l+++++ga+ pg+pvanl+f ++++ +++++++++ DLK+G++lk++Pr++f++q+
  CDO71891.1 471 FKGQTTLPWYAYITALLLGAFITPFSTLLYARMGN--GIATNQLMKMVAGAINPGKPVANLYFSMWSHDVVSTSIGLAGDLKIGQYLKIPPRSMFLTQI 567
                 ***********************************..************************************************************** PP

         OPT 467 iGtlvgavvniavlkllvkaygdict.adasnaftaPqakvfaavavl.lvggk........kglpwafllgavapfilllllkkfpkkstarkl..pl 553
                 +Gt++ga vn++v+  +v+a+++++  ++++n++++++ ++ +++av+  ++++         ++p a+l+g+v +f  +++ k++p+ + +r     l
  CDO71891.1 568 WGTILGAAVNYVVMVSVVDAQREVLLdPRGTNVWSGQYPQSLNSAAVTwSLAKQlygphgpyIWIPLALLFGMVPTFFQWIIAKRWPTIKGIRISsiIL 666
                 ************************999**********************8888889999*998999*********************9999888888** PP

         OPT 554 plafavgfylppsl...sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 p++  + ++++  +   +++ +i+gl+++lwl+r+++ w+kkyn++l+ +L+ G+++m++i++f+v
  CDO71891.1 667 PIIYQYSQWMSSGTnspVTSCIIVGLVSQLWLRRYHPGWYKKYNFILGGALDGGAQVMIFILSFAV 732
                 **************88777999*****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4778.15
//
Query:       CDO71892.1  [L=250]
Description: hypothetical protein BN946_scf184940.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-32  112.6   0.0    2.6e-32  112.1   0.0    1.3  1  Calcipressin  Calcipressin
  ------ inclusion threshold ------
      0.055   13.3   0.0       0.11   12.4   0.0    1.4  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP


Domain annotation for each model (and alignments):
>> Calcipressin  Calcipressin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   2.9e-36   2.6e-32       3     157 ..      44     222 ..      42     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 2.9e-36
  Calcipressin   3 dvvdadnlellralieqtdeilawsllksFrRiivvfsseeaaaavrsqldw....ekeeilGkklrlYfaqpttidrdaa...kkhLalPeaeklF 92 
                   ++++ + +e lr++++ +++  +w+++k+ +R+ +v+ s e a+ +++  d     +  + +   lr+Y + pt+i+++ +   +++L +P  ek+F
    CDO71892.1  44 VFFQREIQEALRSHFQSYGPLHTWAPIKGLKRVFIVYYSVEDAEMAKESNDGlilgDTLDEHDVVLRVYRGHPTPIETSETvehNQYLRPPVNEKNF 140
                   89999*******************************************97756666555555556******9999998875333799********** PP

  Calcipressin  93 lISPPaSPPegweqkaedaPnrtvlaeDlqealakLel.................eekaqlsagkdktpsvdltlvkvevge 157
                   lISPP+SPP+gweq  ed Pn t la Dl  al+kLe                  ee  ++s+ ++  ++vd ++ + ++ e
    CDO71892.1 141 LISPPGSPPVGWEQIREDPPNATPLAGDLIAALKKLEIqaeqerrgaglevllepEEGVGISVCVEDCDAVDSSAPDFDMEE 222
                   *************************************977777666655555555555555555555555555444444443 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.2e-05      0.11      12      66 ..      51     100 ..      50     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  12 eeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66 
                 +e L+ +F+ +Gp  +   ++       +  f+ + s edAe A+e+ +g  lg+
  CDO71892.1  51 QEALRSHFQSYGPLHTWAPIK-----GLKRVFIVYYSVEDAEMAKESNDGLILGD 100
                 689***********6666666.....59999***************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1794.30
//
Query:       CDO71893.1  [L=239]
Description: hypothetical protein BN946_scf184940.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-29  102.7  10.2      2e-29  102.7  10.2    2.0  2  Ccdc124        Coiled-coil domain-containing protein 124 /Oxs


Domain annotation for each model (and alignments):
>> Ccdc124  Coiled-coil domain-containing protein 124 /Oxs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7  10.2   1.1e-33     2e-29       6     129 .]      25     197 ..       7     197 .. 0.68
   2 ?   -2.4   0.1      0.37   6.7e+03      87     103 ..     201     217 ..     200     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.1e-33
     Ccdc124   6 ekreeeekkkeekek..kekkkakkkeveekeleenvnrlsraeenaeeeekve............................................. 57 
                 ++++e+e++++e+ek  +   ++  k  ++  +ee+ n  ++           +                                             
  CDO71893.1  25 AAAAEAERERKEAEKwsD--GAKGAKANARLLAEEEANAPAKV----------Kaapkaagkkaqpknvkpagpgaiaaggslgavdavadeekpgeve 111
                 222222233333222111..11122222222222222222111..........1223333333455667778888888888888888888888888888 PP

     Ccdc124  58 ...AsgideaiaaLsv..........k.keekldrhpekrlkAaYkafeeeeLprlkeenpgLrlsQlkqllkkewkkspeNPlNq 129
                    A+gid+a++ L+v          + ++++l+rhpe+r+kAa++a++e+eLp++++e+pgLrl+Q+ +ll k+++kspeNP+Nq
  CDO71893.1 112 syhATGIDNALDLLEVvtakmdkasvGsQAANLERHPERRFKAAFEAYKERELPKMRQEHPGLRLQQYHDLLYKQFQKSPENPFNQ 197
                 888*******************9987435899*****************************************************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.37
     Ccdc124  87 aYkafeeeeLprlkeen 103
                 +Y a +ee++++lk  n
  CDO71893.1 201 SYDASKEERVEALKRKN 217
                 57777888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1756.02
//
Query:       CDO71894.1  [L=203]
Description: hypothetical protein BN946_scf184940.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.034   14.1   0.8      0.097   12.6   0.0    2.2  2  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2      0.49   8.7e+03       8      18 ..      46      56 ..      44      59 .. 0.55
   2 ?   12.6   0.0   5.4e-06     0.097      12      39 ..      91     119 ..      85     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.49
  Sugarporin_N  8 laialllstaa 18
                  ++i++   +a+
    CDO71894.1 46 IVIFAVMAMAF 56
                  55555555554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.4e-06
  Sugarporin_N  12 lllstaasv.aaaasltiEaRLaaLEkrL 39 
                    +++taa+  +++ + tiE+R+++L ++L
    CDO71894.1  91 SASPTAAASgSSTGKHTIEDRINDLAAAL 119
                   466777777899************97666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1401.50
//
Query:       CDO71895.1  [L=296]
Description: hypothetical protein BN946_scf184940.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2050.51
//
Query:       CDO71896.1  [L=142]
Description: hypothetical protein BN946_scf184940.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-46  156.2   2.0    4.1e-46  156.0   2.0    1.0  1  Cerato-platanin  Cerato-platanin


Domain annotation for each model (and alignments):
>> Cerato-platanin  Cerato-platanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   2.0   2.3e-50   4.1e-46       1     119 []      24     142 .]      24     142 .] 0.99

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 2.3e-50
  Cerato-platanin   1 vsvsydtgyddanrsltvvscsdGsnGlitkywptqgavknfpriGGlsaiagwnsancGtcykityngktiyvlaidaagaGfniakkamdel 94 
                      vsvs+d  yd+a+  lt+v+csdGsnGlitk + t+g+++ fp iGG+++i+gwnsa+cGtc+ +++n+ ti+vlaid+ g+Gfnia +a+d+l
       CDO71896.1  24 VSVSWDDVYDNASGQLTTVACSDGSNGLITKGFTTFGSLPTFPNIGGAPSITGWNSAQCGTCWALSHNNVTIHVLAIDTGGKGFNIALTALDKL 117
                      79******************************************************************************************** PP

  Cerato-platanin  95 tngqaaelGrvdaeveevalsdcgl 119
                      tng+a ++Gr++a+  +v+++ cgl
       CDO71896.1 118 TNGTARQVGRINATASQVNTTLCGL 142
                      ***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1122.35
//
Query:       CDO71897.1  [L=195]
Description: hypothetical protein BN946_scf184940.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1449.25
//
Query:       CDO71898.1  [L=506]
Description: hypothetical protein BN946_scf184940.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   10.8   0.0       0.28   10.3   0.0    1.1  1  PaaA_PaaC  Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.6e-05      0.28      95     152 ..     332     389 ..     323     392 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.6e-05
                 GGGS---SHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHH CS
   PaaA_PaaC  95 lvelpngdwadtivrqflvdaaaiilleaLkrssygplaaiaakvlkEesyHlrhgee 152
                  +++p+ d  + ++ + +++a+a +++ +L++++y++  +  ++ l E  yH r +++
  CDO71898.1 332 AIDVPATDLVKGVTCGDVIEAIATAMYMRLTQAQYDNATRHQKRLLSESYYHNRSTAD 389
                 6778888888889999999**********************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3975.53
//
Query:       CDO71899.1  [L=815]
Description: hypothetical protein BN946_scf184940.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-05   23.2  23.4    2.7e-05   23.2  23.4    4.6  5  VSP       Giardia variant-specific surface protein
  ------ inclusion threshold ------
      0.038   14.2   3.8      0.071   13.4   3.8    1.3  1  DUF4381   Domain of unknown function (DUF4381)
      0.078   13.3   0.3       0.14   12.4   0.3    1.4  1  DUF3382   Domain of unknown function (DUF3382)


Domain annotation for each model (and alignments):
>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.23   1.3e+03     271     295 ..      27      51 ..      15      58 .. 0.75
   2 ?   -6.7  23.5         3   1.8e+04     286     340 ..     193     247 ..     178     262 .. 0.63
   3 !    5.2  28.2    0.0013       7.9     252     326 ..     262     337 ..     247     343 .. 0.83
   4 !   23.2  23.4   4.6e-09   2.7e-05      90     172 ..     338     424 ..     333     430 .. 0.84
   5 ?   -0.1  14.0     0.054   3.2e+02     265     336 ..     429     501 ..     417     520 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.23
         VSP 271 vcttcldGyvkssdacakcdsscet 295
                 v  +cl+Gy++++   ++ +s+ +t
  CDO71899.1  27 VAGQCLEGYTNATIGATLSASGAAT 51 
                 3357999999998888888888776 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 3
         VSP 286 cakcdsscetct.G.aattcktcatGyyksatke..vactssesdkgvtGvkdclscap 340
                 c+  +s+  tc  G + t+c+tca G++  + +   + cts++  +g+tG   cl+ a 
  CDO71899.1 193 CS--ASGTCTCPaGfNGTSCETCAPGFFGPTCQAcpADCTSCD--DGMTGTGRCLQLAI 247
                 22..233334444435789999999999755444123466665..57999999988764 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0013
         VSP 252 dsgdlvvcsegckectsstvcttcldGyvks.sdacakcdsscetctGaattcktcatGyyksatkevactssesd 326
                 +s+    c  g  + ++ t+c +c+ G+  +  + c  c  +c  c+    +c +c +G+ + a   ++c ++++ 
  CDO71899.1 262 NSDGTCACNAGWTTGANGTSCAKCATGFFLNsDGNCEVCGLGCTQCADGNGECISCKSGFTQNANDNTQCFAAQAT 337
                 5666788999*****************98772568************99999**************9999988765 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 4.6e-09
         VSP  90 kgqlkacddGfyksgdacspcdesvktcsagtasdcteclaGkvlk....ygndgtkgtcGegcatgtgaGacktcGltidGasycs 172
                 +++   c+dG + +g +c+pc++ ++tcs++t+sdc  c aGk        g+dg     G+  + +  + +c+tc      ++y s
  CDO71899.1 338 TSTGTVCPDGSFSNGTSCQPCSPLCQTCSGPTSSDCIICGAGKYSLngscVGTDGNGVCAGSSLVADNNKHECDTCPSKCTTCKYSS 424
                 455678************************************97541222578888888999999***********99988888877 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.054
         VSP 265 ectsstvcttcldGyvkssdacak.cdsscetctGaattcktcatGyyksatkevactssesdkgvtGvkdcl 336
                 +  ++ +ct cl G+v s + c   c s+         tc +c+      + ++v+ +   +   + G+  cl
  CDO71899.1 429 STIDQVQCTGCLPGFVLSQGKCVEsCPSGTFLNPQDNVTCTACVGREVLRGGTCVSANCNGTSSVISGLGICL 501
                 3345566666666666666555431444444444556666666666666666666544333334555655554 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   3.8   1.2e-05     0.071      20      59 ..     545     586 ..     539     600 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
     DUF4381  20 Gwwlllaalll...llllvlalwllrrrkrnrreAlreLaalr 59 
                  ww +l+++l    +++l+l+ w++r rkr r +A + +aa++
  CDO71899.1 545 QWWEILLMALGcafIFILFLMCWRRRMRKR-RAAATANFAAAK 586
                 355444344445556666666666666665.888888888887 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   2.4e-05      0.14      32      83 ..     538     592 ..     531     617 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
     DUF3382  32 lvlep...rwglvaiavavvfvgqLlrplllqalkarkklkkveskadgvlvltq 83 
                 +v++     w+ +++a +  f++ L++ ++++++++r++++ +  +a++ l+ t+
  CDO71899.1 538 TVVKRplqWWEILLMALGCAFIFILFLMCWRRRMRKRRAAATANFAAAKNLDHTK 592
                 4444457567788888899*****************9998776655555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1076  (0.0600145); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 4813.39
//
Query:       CDO71900.1  [L=138]
Description: hypothetical protein BN946_scf184940.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 990.68
//
Query:       CDO71901.1  [L=237]
Description: hypothetical protein BN946_scf184940.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-19   68.8   0.0      7e-19   68.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    6.7e-17   62.0   0.0      2e-16   60.4   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
    1.3e-15   57.8   0.0    5.5e-15   55.8   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    4.6e-15   55.7   0.0    6.4e-15   55.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.4e-11   45.0   0.0      3e-11   43.9   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    1.1e-09   37.9   0.0    2.2e-09   37.0   0.0    1.5  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.9e-07   28.9   0.0    9.7e-07   28.5   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00012   21.7   0.0     0.0002   21.0   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0028   16.7   0.0      0.006   15.6   0.0    1.5  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.022   14.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.021   14.5   0.0      0.048   13.3   0.0    1.5  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.045   13.8   0.0      0.059   13.3   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.052   14.6   0.0       0.14   13.2   0.0    1.9  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   5.1e-22     7e-19       8     161 ..      45     203 ..      34     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 5.1e-22
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaae..........pqgkfdlIvlrev 91 
                      +++d +  l+  ++++ +vLd++cGtG ++  lr+++++++g D+s + v+i+ ++k a+     e+ea +           ++kfdlI+++  
       CDO71901.1  45 AMRDYYPALF--DKERTKVLDYACGTGLFSLALRPHVKHIVGLDISQVSVDIY-NRKAAEEGVSEEMEAVCatlegkpgelLDAKFDLITCSAA 135
                      6788899999..7999************************************9.666666666656655556666655555555********** PP

  Methyltransf_23  92 lehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGle 161
                       +h+p+ + + r +a  lkpgG ll+ ++ a+   ++l+ +   +v    h++  s ++++  +e aGl 
       CDO71901.1 136 YHHIPSIEDTTRALAYFLKPGGSLLVADIKAPPDGKELFPKKYHDVVP--HRNGLSKDTMRMVFESAGLV 203
                      *****************************9998899999998888887..9999**************96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   1.5e-19     2e-16       1      97 []      61     157 ..      61     157 .. 0.95
   2 ?   -2.2   0.0       5.2   7.1e+03      89      97 .]     226     234 ..     217     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.5e-19
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      vLd +cGtG ++lal  ++  ++++g+Dis+  +++ +++a+eeg+  ++e v++ +e  p  + d++fDl+++s a+hh++   +e++ + +a
       CDO71901.1  61 VLDYACGTGLFSLALRPHV--KHIVGLDISQVSVDIYNRKAAEEGVseEMEAVCATLEGKPgeLLDAKFDLITCSAAYHHIP--SIEDTTRALA 150
                      9*****************9..9***********************************99875579*********988**987..899******* PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                        LkpgG
       CDO71901.1 151 YFLKPGG 157
                      ******9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.2
                      HHHHEEEEE CS
  Methyltransf_25  89 iarvLkpgG 97 
                      iar++kpgG
       CDO71901.1 226 IARAMKPGG 234
                      78999**99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0     4e-18   5.5e-15       1      96 []      62     161 ..      62     161 .. 0.95
   2 ?   -1.2   0.0       2.4   3.3e+03      84      92 ..     226     234 ..     219     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 4e-18
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTS..S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaeklp..fednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld +cGtG+++ al  +++++vg+D+s+  +++ ++ka eeg+  ++e v+a++e  p  + d++fDl+++s + hh++  e++ + +a  Lkp
       CDO71901.1  62 LDYACGTGLFSLALRPHVKHIVGLDISQVSVDIYNRKAAEEGVseEMEAVCATLEGKPgeLLDAKFDLITCSAAYHHIPSIEDTTRALAYFLKP 155
                      899*************************************999999999******76555********************************** PP

                      EEEEEE CS
  Methyltransf_11  91 gGllvi 96 
                      gG l++
       CDO71901.1 156 GGSLLV 161
                      **9975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
                      HHHHEEEEE CS
  Methyltransf_11  84 iaRvLkpgG 92 
                      iaR +kpgG
       CDO71901.1 226 IARAMKPGG 234
                      89******9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   4.6e-18   6.4e-15       3     113 ..      57     165 ..      55     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 4.6e-18
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      + ++vlD++CGtG ++++l   +   +++vG+Dis+ ++   + +a++ g++ ++e   +  e ++  l d+kfDli++ ++ +++++ +++ +
       CDO71901.1  57 ERTKVLDYACGTGLFSLALRPHV---KHIVGLDISQVSVDIYNRKAAEEGVSeEMEAVCATLEGKPGELLDAKFDLITCSAAYHHIPSIEDTTR 147
                      6789****************554...67****************9*9999998999999999999977666*********************** PP

  Methyltransf_31  96 eiervlkpggilliedpr 113
                       +   lkpgg ll++d++
       CDO71901.1 148 ALAYFLKPGGSLLVADIK 165
                      ****************99 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.2e-14     3e-11       1      99 []      62     159 ..      62     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.2e-14
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L+  cGtG ++ al+++   ++++g+Dis+ ++ d  ++ a++e+   +++e     l+ ++g+   ++fDl+++s + hh++ i+++ + ++ 
       CDO71901.1  62 LDYACGTGLFSLALRPH--VKHIVGLDISQVSV-DIYNRKAAEEG-VSEEMEAVCATLEGKPGElldAKFDLITCSAAYHHIPSIEDTTRALAY 151
                      7889*************..**************.55555555554.4566666666655555558889************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                       LkpgG l
       CDO71901.1 152 FLKPGGSL 159
                      ******76 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.6e-12   2.2e-09      45     154 ..      55     164 ..      46     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.6e-12
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS..-T-EEEEEEES-GGG-S-HHHH CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfe..ddsfDvvtvsfGlrnvtDklka 135
                      +k+ +kvlD a+Gtg ++++l  +v+   ++v+lDi++  +++ ++k+ eeg++ ++e ++a  e  p e  d  fD++t s     ++ ++ +
       CDO71901.1  55 DKERTKVLDYACGTGLFSLALRPHVK---HIVGLDISQVSVDIYNRKAAEEGVSeEMEAVCATLEGKPGEllDAKFDLITCSAAYHHIPSIEDT 145
                      67889******************998...599*********************989******8777665433899******************* PP

                      HHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlef 154
                       + +   lkpGG l+v ++
       CDO71901.1 146 TRALAYFLKPGGSLLVADI 164
                      **************99765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   7.1e-10   9.7e-07     151     257 ..      42     160 ..      37     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7.1e-10
        PrmA 151 clealekl.....vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleval......seellkeekadvivaNILaev 238
                 c+ a+ ++      ke+++vlD+ +G+G+ ++a ++   k++v++Di +v+v++ ++ a+  +v++++e         ++ell+ +k+d+i +    + 
  CDO71901.1  42 CVDAMRDYypalfDKERTKVLDYACGTGLFSLA-LRPHVKHIVGLDISQVSVDIYNRKAAEEGVSEEMEAVCatlegkPGELLD-AKFDLITCSAAYHH 138
                 666666666666688999*************97.67899***************************888742222232455555.99****99887777 PP

        PrmA 239 lielaed...ikklvkegglli 257
                 + ++ ++   ++ ++k+gg+l+
  CDO71901.1 139 IPSIEDTtraLAYFLKPGGSLL 160
                 6666554111455677777765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.4e-07    0.0002      30     136 ..      56     160 ..      49     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT...TSTTS-EEEEEE---STTTCHCHHHHHHHHHH CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvle...eveekkfdlivsNPPfhagkatelavaeelia 123
                 +++ kvlD +cG+G+ ++al  + ++  ++ +d++  ++++ ++ +++++++  +e+v   +     e+ ++kfdli +   +h+        +e+  +
  CDO71901.1  56 KERTKVLDYACGTGLFSLALRPHVKH--IVGLDISQVSVDIYNRKAAEEGVSeeMEAVCATLEGkpgELLDAKFDLITCSAAYHHIPS-----IEDTTR 147
                 46779*************99988877..9******************99999775544444433111445799999999877777665.....333344 PP

                 HHHHHEEEEEEEE CS
         MTS 124 eAkeaLkegGeLl 136
                 + + +Lk+gG+Ll
  CDO71901.1 148 ALAYFLKPGGSLL 160
                 4455666666665 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.3e-06     0.006     198     244 ..      54     100 ..      15     111 .. 0.85
   2 ?   -2.6   0.0       1.5     2e+03     289     304 ..     181     196 ..     180     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.3e-06
  tRNA_U5-meth_tr 198 tqeskgdllelycGnGnfslalarnfekvlateiakssveaaqynia 244
                       ++++  +l+  cG G fslal  ++++++  +i++ sv+      a
       CDO71901.1  54 FDKERTKVLDYACGTGLFSLALRPHVKHIVGLDISQVSVDIYNRKAA 100
                      556677899******************************97665555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
  tRNA_U5-meth_tr 289 vdPPraGldketvklv 304
                      v P r Gl k+t+ +v
       CDO71901.1 181 VVPHRNGLSKDTMRMV 196
                      5699*********998 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.6e-05     0.022      72     171 ..      56     161 ..      29     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
                 -TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC...SEEEEES-GGGTTGGG-SEEEEEESSBBSS--......HHHHH CS
        PCMT  72 kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle...nvivvvgDGrkGyeekaPYdaihvgaaapeiP......ealid 161
                 k+ ++vL+  +G+G  +  l   v++   +v+++ ++  v+  +r+  +++++   + +  + +G+ G    a +d i  +aa ++iP      +al  
  CDO71901.1  56 KERTKVLDYACGTGLFSLALRPHVKH---IVGLDISQVSVDIYNRKAAEEGVSeemEAVCATLEGKPGELLDAKFDLITCSAAYHHIPsiedttRALAY 151
                 67789*********998888776664...55777666666666666555555543334445558************************55555458999 PP

                 TEEEEEEEEE CS
        PCMT 162 QLkeGGrlvv 171
                  Lk+GG l+v
  CDO71901.1 152 FLKPGGSLLV 161
                 99****9986 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-05     0.048      26      91 ..      46     111 ..      43     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
                 HHHHHHT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE CS
        TPMT  26 lkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgv 91 
                 ++ +++al  k+  +vl   CG +l   +l  + +++vG+++s+  v  ++++a +e  ++e+++v
  CDO71901.1  46 MRDYYPALFDKERTKVLDYACGTGLFSLALRPHVKHIVGLDISQVSVDIYNRKAAEEGVSEEMEAV 111
                 5667778778888999999******************************99999886666666554 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-05     0.059      23      91 ..      55     117 ..      26     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
  Methyltransf_32  23 esgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsiee 91 
                      ++++++v+D ++G g  s +l      +  ++vg+d+++  v+  ++ a++ g  ++++++   ++ e+
       CDO71901.1  55 DKERTKVLDYACGTGLFSLALRP----HVKHIVGLDISQVSVDIYNRKAAEEG--VSEEMEAVCATLEG 117
                      567899**********9999999....6789*************999999999..88888877776665 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0    0.0001      0.14      17     106 .]      74     164 ..       8     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
  Methyltransf_24  17 alrrngagrlvavdhdpg..aeeaaalareaglddrvrlikadseealaslaagsiDllfiDg.ghaaeavledleallprlapggvvlfdDi 106
                      alr + + ++v +d  +   +  + + a+e+g+++ ++ ++a++e   ++l + ++Dl+ + +  h   +  +  +al   l+pgg +l+ Di
       CDO71901.1  74 ALRPHVK-HIVGLDISQVsvDI-YNRKAAEEGVSEEMEAVCATLEGKPGELLDAKFDLITCSAaYHHIPSIEDTTRALAYFLKPGGSLLVADI 164
                      3333333.55555555533211.22334457******************************9834555777777899999******9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1551.11
//
Query:       CDO71902.1  [L=240]
Description: hypothetical protein BN946_scf184940.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-16   60.3   0.0    2.5e-16   59.9   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    1.1e-15   58.1   0.0    2.2e-15   57.2   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    2.8e-15   56.4   0.0    3.8e-15   56.0   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    6.7e-15   55.5   0.0    1.3e-14   54.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
      3e-12   47.1   0.0    5.2e-12   46.4   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      6e-06   25.9   0.0    9.1e-06   25.3   0.0    1.2  1  MTS              Methyltransferase small domain
    1.8e-05   24.3   0.0    2.7e-05   23.7   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      3e-05   23.5   0.0    3.9e-05   23.1   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0047   16.1   0.0      0.019   14.1   0.0    1.7  1  Pox_MCEL         mRNA capping enzyme
     0.0077   16.1   0.0     0.0096   15.8   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.018   15.0   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
      0.017   14.7   0.0      0.026   14.1   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.026   13.5   0.0      0.036   13.1   0.0    1.1  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
      0.034   13.8   0.0      0.085   12.5   0.0    1.6  1  NodS             Nodulation protein S (NodS)
      0.087   12.5   0.2       0.31   10.7   0.0    1.9  2  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.095   13.7   0.1       0.28   12.2   0.0    1.8  1  Methyltransf_24  Methyltransferase domain
        0.1   12.3   0.0       0.15   11.7   0.0    1.4  1  CmcI             Cephalosporin hydroxylase
       0.15   11.3   0.0       0.27   10.4   0.0    1.4  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   2.5e-19   2.5e-16       8     161 ..      51     210 ..      34     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 2.5e-19
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqg...........k 82 
                      +++  +  l+  ++   +vLd++cG+G l++ l ++++s++gvD+s + v+ +         +++ ++ +++         +           k
       CDO71902.1  51 AMRSVYPLLF--DEDTTEVLDYACGVGMLSQALCPHVKSIVGVDISQASVDQYNinasnqglTPDGMKAVCA---------ElrgepgelddaK 133
                      4556666666..68888*****************************98887774555444443333333333.........033344445566* PP

  Methyltransf_23  83 fdlIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrllldw.lylvpagrhisffsarslkelleeaGle 161
                      fd++v+  + +h+p+ + + r +a  lkpgG l+++++ a    + l+++  + +vp+ +h+   s++s++ ++e+aGl 
       CDO71902.1 134 FDVVVCCASYHHFPSIAQTTRVLAHFLKPGGSLIVTDVRAAPDGRVLFKEThHHIVPH-KHG--LSEESVRSAFEDAGLV 210
                      *************************************987767899999983445544.666..9999**********96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   2.2e-18   2.2e-15       1      97 []      67     164 ..      67     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 2.2e-18
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkei 89 
                      vLd +cG G l++al  ++  ++++gvDis++ +++ + +a+++gl    ++ v+++++  p  ++d++fD+vv++ ++hh++   ++++ + +
       CDO71902.1  67 VLDYACGVGMLSQALCPHV--KSIVGVDISQASVDQYNINASNQGLtpdGMKAVCAELRGEPgeLDDAKFDVVVCCASYHHFP--SIAQTTRVL 156
                      9*****************9..9*********************99988888888888866555489*********877***98..899****** PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                      a  LkpgG
       CDO71902.1 157 AHFLKPGG 164
                      *******9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   3.8e-18   3.8e-15       2     114 ..      62     180 ..      61     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.8e-18
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieeleklledekfDlilsnevlnaladpdki 93 
                      +++++vlD++CG G l+ +l   + +   +vG+Dis+ ++ + + na+++gl+   ++   ++    +  l d+kfD++++ +  +++++ +++
       CDO71902.1  62 EDTTEVLDYACGVGMLSQALCPHVKS---IVGVDISQASVDQYNINASNQGLTpdGMKAVCAELRGEPGELDDAKFDVVVCCASYHHFPSIAQT 152
                      57899***************965543...***********************999999999998888866999********9999********* PP

  Methyltransf_31  94 leeiervlkpggilliedpr.......l 114
                       + +   lkpgg l+++d+r       l
       CDO71902.1 153 TRVLAHFLKPGGSLIVTDVRaapdgrvL 180
                      *******************944433331 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.3e-17   1.3e-14       1      96 []      68     168 ..      68     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.3e-17
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.....EEEETTEECC..CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.....kvefvvadae..klpfednsfDlvvssevlhhvedpekalkeiaRv 87 
                      Ld +cG G l++al  +++++vgvD+s++ +++ + +as++gl     k   v+a+++     + d++fD+vv+  + hh++  +++ + +a  
       CDO71902.1  68 LDYACGVGMLSQALCPHVKSIVGVDISQASVDQYNINASNQGLtpdgmK--AVCAELRgePGELDDAKFDVVVCCASYHHFPSIAQTTRVLAHF 159
                      899****************************************999554..555555521457******************************* PP

                      EEEEEEEEE CS
  Methyltransf_11  88 LkpgGllvi 96 
                      LkpgG l++
       CDO71902.1 160 LKPGGSLIV 168
                      ******986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   5.2e-15   5.2e-12       1      99 []      68     166 ..      68     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 5.2e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L+  cG+G l++al+++   ++++gvDis++++ d  +  a+++++  + ++    +l  ++g+   ++fD+vv++   hh++ i+++ + +++
       CDO71902.1  68 LDYACGVGMLSQALCPH--VKSIVGVDISQASV-DQYNINASNQGLTPDGMKAVCAELRGEPGElddAKFDVVVCCASYHHFPSIAQTTRVLAH 158
                      7889*************..**************.8888888888899999999999977666669999************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                       LkpgG l
       CDO71902.1 159 FLKPGGSL 166
                      ******76 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.2e-09   9.1e-06      31     138 ..      63     169 ..      55     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 9.2e-09
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTT...TSTTS-EEEEEE---STTTCHCHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvle...eveekkfdlivsNPPfhagkatelavaeelia 123
                  + +vlD +cG+G+l+ al  + ++  ++ vd++ ++++  + n+++++l    +++v  ++     e++++kfd++v+   +h+       +  +  +
  CDO71902.1  63 DTTEVLDYACGVGMLSQALCPHVKS--IVGVDISQASVDQYNINASNQGLTpdgMKAVCAELRGepgELDDAKFDVVVCCASYHHFPS----I-AQTTR 154
                 5668************999876666..9*********************9999988888877751225679********999998776....3.33345 PP

                 HHHHHEEEEEEEEEE CS
         MTS 124 eAkeaLkegGeLliV 138
                   +++Lk+gG+L++ 
  CDO71902.1 155 VLAHFLKPGGSLIVT 169
                 556789999988875 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.7e-08   2.7e-05     160     258 ..      62     168 ..      53     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.7e-08
        PrmA 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseell......keekadvivaNILaev...lielaedikk 248
                 + ++evlD+ +G G+L+ a +    k++v+vDi + +v+  + Na+  +++   ++  + +el       +++k+dv+v+    +    + + +  +++
  CDO71902.1  62 EDTTEVLDYACGVGMLSQA-LCPHVKSIVGVDISQASVDQYNINASNQGLTPdGMKA-VCAELRgepgelDDAKFDVVVCCASYHHfpsIAQTTRVLAH 158
                 45679************76.56689*******************9999888755544.222222212322479******98766541115555556778 PP

        PrmA 249 lvkeggllil 258
                 ++k+gg+li+
  CDO71902.1 159 FLKPGGSLIV 168
                 8888888886 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     4e-08   3.9e-05      46     154 ..      62     171 ..      48     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4e-08
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS..TEEEEE--..TTT-TTS-T-EEEEEEES-GGG-S-HHHH CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki..nieflqan..aeeLpfeddsfDvvtvsfGlrnvtDklka 135
                         ++vlD a+G g l+ +l  +v++   +v++Di++  +++ +  + ++g +   ++ ++a+  +e  + +d  fDvv        ++ + ++
       CDO71902.1  62 EDTTEVLDYACGVGMLSQALCPHVKS---IVGVDISQASVDQYNINASNQGLTpdGMKAVCAElrGEPGELDDAKFDVVVCCASYHHFPSIAQT 152
                      56779******************986...8999*****9999999999**999887889988644778888999******************** PP

                      HHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlef 154
                       + +   lkpGG l+v ++
       CDO71902.1 153 TRVLAHFLKPGGSLIVTDV 171
                      **************99765 PP

>> Pox_MCEL  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.9e-05     0.019      63     201 ..      62     189 ..      57     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
    Pox_MCEL  63 snklkvLdldcgkGgDLeKyekgeIsklvatDiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFes 161
                  ++ +vLd +cg G  L      +++++v++Di+++s+++    Yn   s++  +        +++ + + +  e  e  ++kfd+v +  ++H  F s
  CDO71902.1  62 EDTTEVLDYACGVGM-LSQALCPHVKSIVGVDISQASVDQ----YNINASNQGLT-----PDGMKAVCAELRG-EPGELDDAKFDVVVCCASYHH-FPS 148
                 56789*******986.999999****************87....86555555553.....4445555543332.22223689*******999996.888 PP

    Pox_MCEL 162 eekartvlrNvaellasGGkvlgT....tpdgdelskltvkklk 201
                  ++     r +a+ l++GG +++T     pdg +l k t+ ++ 
  CDO71902.1 149 IAQTT---RVLAHFLKPGGSLIVTdvraAPDGRVLFKETHHHIV 189
                 88885...556899*********955555788888776666654 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.6e-06    0.0096     118     172 ..     129     183 ..      62     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.6e-06
                     --TT-EEEEEEES---S.S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHH CS
  Methyltransf_8 118 ledesvdvavfclslmg.tnladflkeanrvlkvGGllkvaevksrfesvklfara 172
                     l+d   dv+v+c s      +a+ ++     lk+GG l v++v++  ++++++ ++
      CDO71902.1 129 LDDAKFDVVVCCASYHHfPSIAQTTRVLAHFLKPGGSLIVTDVRAA-PDGRVLFKE 183
                     799***********97526899*********************974.455555444 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.8e-05     0.018      24      74 ..      62     108 ..      46     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraekl 74 
                      ++ ++v+D ++G g Ls++l      +  ++vg+d++++ v++ +  a++ 
       CDO71902.1  62 EDTTEVLDYACGVGMLSQALCP----HVKSIVGVDISQASVDQYNINASNQ 108
                      56789****************9....5789**********99987666654 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.026      13     108 ..      63     169 ..      52     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
        MetW  13 pgsrvldlGcGdGellellk.eekqvdgrGle...ldeegvaecva....kGlsviqgdldkdlenfedksfdyvvlsqt...lqatrnpkevldellr 100
                 + ++vld  cG G l + l  + k + g  +    +d+ +++++ +     G++ +  +l  +  + +d +fd+vv   +   + ++ ++++vl + l+
  CDO71902.1  63 DTTEVLDYACGVGMLSQALCpHVKSIVGVDISqasVDQYNINASNQgltpDGMKAVCAELRGEPGELDDAKFDVVVCCASyhhFPSIAQTTRVLAHFLK 161
                 6789***********9988525577776666421157778887654333369999*********************9876112457899999***9999 PP

        MetW 101 igrraivs 108
                  g   iv+
  CDO71902.1 162 PGGSLIVT 169
                 99998886 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-05     0.036     200     245 ..      62     105 ..      50     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
  tRNA_U5-meth_tr 200 eskgdllelycGnGnfslalarnfekvlateiakssveaaqyniaa 245
                      e + ++l+  cG G +s al+ +++ ++  +i+++sv+   yni+a
       CDO71902.1  62 EDTTEVLDYACGVGMLSQALCPHVKSIVGVDISQASVDQ--YNINA 105
                      5667899******************************95..55544 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.5e-05     0.085      40     148 ..      60     172 ..      45     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.5e-05
        NodS  40 aqgsiadalevGcaaGalterlapyckrltvvdvveeaiararervkes...sh.iswivsdvqqfs...tdekfdlivvaevlyyiedvaelraavrn 131
                  + + +++l+  c  G l++ l+p+ k++  vd+ + ++++ +    ++   ++ ++ + ++++       d+kfd++v++   ++      +  + r 
  CDO71902.1  60 FDEDTTEVLDYACGVGMLSQALCPHVKSIVGVDISQASVDQYNINASNQgltPDgMKAVCAELRGEPgelDDAKFDVVVCCASYHHFPS---IAQTTRV 155
                 567889****************************9999998777666641113313333344433212224689999999877655554...4556678 PP

        NodS 132 lvsllapdgqlvfGsar 148
                 l ++l+p+g l+    r
  CDO71902.1 156 LAHFLKPGGSLIVTDVR 172
                 88889999988876655 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.31      45      80 ..      71     106 ..      55     142 .. 0.87
   2 ?   -1.1   0.0       1.2   1.2e+03      67      81 ..     195     209 ..     180     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
                 T-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHT CS
        TPMT  45 lCGkaldlvwlAeqgrevvGvelselAvekffeean 80 
                  CG ++  ++l  + +++vGv++s++ v +++ +a 
  CDO71902.1  71 ACGVGMLSQALCPHVKSIVGVDISQASVDQYNINAS 106
                 69999999**********************976554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
                 S-HHHHHHHHHHHTT CS
        TPMT  67 lselAvekffeeanl 81 
                 lse  v+++fe+a+l
  CDO71902.1 195 LSEESVRSAFEDAGL 209
                 899999999999988 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00029      0.28      13     105 ..      76     170 ..      71     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00029
  Methyltransf_24  13 wllralrrngagrlvavdhdpg.aeeaaalareaglddr.vrlikadseealaslaagsiDllfiDg.ghaaeavledleallprlapggvvlf 103
                      +l +al+ + + ++v vd  ++   ++  +a ++gl+   ++ ++a+++ + ++l++ ++D++++ +  h   + ++  ++l + l+pgg +++
       CDO71902.1  76 MLSQALCPHVK-SIVGVDISQAsVDQYNINASNQGLTPDgMKAVCAELRGEPGELDDAKFDVVVCCAsYHHFPSIAQTTRVLAHFLKPGGSLIV 168
                      56788888887.89999998853233344444467765459999999****99********998876267779*****************9998 PP

  Methyltransf_24 104 dD 105
                       D
       CDO71902.1 169 TD 170
                      77 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.15      61     148 ..      86     171 ..      71     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
        CmcI  61 rkvlaididireknrqaieahplasrieliegssvdpeiveqvkslakekekvlvilDsdHthehvlaeLeayaplvsaGsYivveDt 148
                   ++++di++ + ++ +i+a   ++ ++    ++v +e   +  +l + k  v+v+  s H+   + +  +++a ++++G  ++v+D 
  CDO71902.1  86 KSIVGVDISQASVDQYNINA--SNQGLTPDGMKAVCAELRGEPGELDDAKFDVVVCCASYHHFPSIAQTTRVLAHFLKPGGSLIVTDV 171
                 56888999888888877777..77777777778888888888889999999***********************************96 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.27     170     248 ..     138     228 ..     131     235 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                     HH-SSHHHH...HHHHHHHHTTEEEEEEEEEEEECS-S..EEEETTEEEE---....B-HHHHHHHHHHTTEEEEEEE...G-TTTB--SE CS
  NNMT_PNMT_TEMT 170 aacedleey...lralrnlasllkpGGhlvlggvlees..eynvGekkfslla....lekeevlealkkaglkveelk...ksakvldneg 248
                     ++c +++++    ++ r la  lkpGG l++++v  +      + e + ++++    l++e v+ a ++agl   e+k   k +++++ e+
      CDO71902.1 138 VCCASYHHFpsiAQTTRVLAHFLKPGGSLIVTDVRAAPdgRVLFKETHHHIVPhkhgLSEESVRSAFEDAGLVDFEMKdafKAKMTATGED 228
                     5666666652225677889999*********998765411555666555554333339999999999999986555443333445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1751.68
//
Query:       CDO71903.1  [L=787]
Description: hypothetical protein BN946_scf184940.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00032   21.1   0.0    0.00072   19.9   0.0    1.5  1  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
  ------ inclusion threshold ------
      0.094   10.9  20.6       0.13   10.5  20.6    1.1  1  Nop14           Nop14-like family
       0.89    7.6  24.3        1.2    7.1  24.3    1.1  1  DNA_pol_phi     DNA polymerase phi
        1.5    8.7  23.7        2.8    7.8  23.7    1.4  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        1.9    7.8   7.1        4.4    6.6   7.1    1.7  1  DUF4820         Domain of unknown function (DUF4820)
        2.9    7.0   4.3        4.8    6.3   4.3    1.3  1  Zip             ZIP Zinc transporter
        5.3    5.7   8.6        8.8    5.0   8.6    1.3  1  NPR3            Nitrogen Permease regulator of amino acid tra
        9.8    5.6   8.5         18    4.7   8.5    1.4  1  Sec62           Translocation protein Sec62


Domain annotation for each model (and alignments):
>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.2e-07   0.00072      10      77 ..      32     111 ..      26     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
      BRCT_2  10 FYin........daepspsreklkklIeknGGevvetitsavyiviaesneee...laekrkrrvvspky.IkdCikkgk 77 
                 FY+          a+ ++ r +l++ I++nGG+v++ +++a++i++ e   +    + e ++ ++v   + + +Ci++g+
  CDO71903.1  32 FYLYgtnepespWAIHEAYRTELEEEITQNGGQVCKAERDADTILVGEAGLDPlrqKYELNRSPYVELPWfVHACIAQGE 111
                 666444444444345567899************************99999888999777788888886543899*99997 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  20.6   5.8e-05      0.13     343     410 ..     515     585 ..     435     635 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.8e-05
       Nop14 343 taeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdlese...eeeeedel 410
                 + + e+e+ e+++ee+ +++e+e+  + e ++e+eeeeedeeeeeeeeed++ + + +     + ee+d +
  CDO71903.1 515 ETTPEGEDAEEEEEEERSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEEDDEAAAHAHVAeapDFEEDDFF 585
                 22223333333333333333333333333333333333333333322222222222222235444444433 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  24.3   0.00056       1.2     635     694 ..     514     574 ..     504     631 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00056
  DNA_pol_phi 635 aelf.edededeeddeeeeeeddeededseedddeeesdedeededdedvdeidelrekla 694
                  ae   e+ed +ee++ee + e++ee  ++e d++eee++edee+e++e++d++ + ++ +a
   CDO71903.1 514 AETTpEGEDAEEEEEEERSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEEDDEAAAHAHVA 574
                  3433455555555555555555555555554444433333333333333333223333333 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  23.7    0.0012       2.8     122     342 ..     356     566 ..     222     584 .. 0.33

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
       TFIIA 122 leppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq...sqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqq 216
                  +p+   p+g++  ++         ++s a++ a+qp+ +       +q s+aq s  ++++q    ++l+ p  + l+   +++ qq+ +  +   ++
  CDO71903.1 356 PSPEDAGPSGTQRTPTPS------PHSSPAEKGAQQPARKEPLPratRQRSVAQVSQIPMSSQ----ATLVGPVPTqLR--GAPVSQQPGRPRADRDEE 442
                 233233333333222221......123333333333333333321112222222222222222....222222222111..111222221111111111 PP

       TFIIA 217 qqqe..............esqqaqqasqeqvag.sqvessqtdgaedaleeespv..legelsaeeeagaqkeelsreeidrireealkakelekeskk 298
                    e              + qq +q++  ++++ ++     ++ +++ +e + p+   ++ +s +++a++      +++++       + +  e+e   
  CDO71903.1 443 ---EeegpemrqraakrrKIQQIPQPPAVELEPlREGGRGARSAPQKVSEAARPIkvAKAAPSLRKPAQK-----ASSRAETT----PEGEDAEEE--- 526
                 ...0111222211111112222222222222222222233333333333333333212222222221111.....11111111....111111111... PP

       TFIIA 299 kkraee.ssladlseilqlDGagddsdeeeeeeesdedsdsessd 342
                    +ee +s+++++e +q+   +++++eee eee++e+++  +++
  CDO71903.1 527 ---EEEeRSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEE--DDE 566
                 ...1222334455667776554444444222222222211..111 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.1     0.002       4.4     147     211 ..     511     571 ..     433     586 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.002
     DUF4820 147 iCsrpgrsipvsseldnsartlterksekesaesseskkrnkeerdaeseeessedeeeeetvke 211
                 +  r  ++++     d++ +  +er++e+e++  +++ ++++ee+++++eee++e+e++e++ + 
  CDO71903.1 511 SS-RAETTPEG---EDAEEEEEEERSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEEDDEAAAHA 571
                 22.33333321...222222333333333333333333333333333333333433344444443 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.3    0.0021       4.8     119     181 ..     509     571 ..     489     644 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0021
         Zip 119 sesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklas 181
                 ++s+++++ ++ +  e+ee e+  ae++++  ++e+++++++e +++e+e+++ee+d+  +++
  CDO71903.1 509 KASSRAETTPEGEDAEEEEEEERSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEEDDEAAAHA 571
                 333334444444444444444555555555555666666666666666665554444443333 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.6    0.0039       8.8      47     115 ..     506     567 ..     481     610 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0039
        NPR3  47 skkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdees 115
                 +        +k ssr +++ + e+++++e++++s ++ee+  + e +++ee+e+++eeeeee+e+d+e+
  CDO71903.1 506 P-------AQKASSRAETTPEGEDAEEEEEEERSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEEDDEA 567
                 2.......2333333333332222222222222222222222222222222222222222222222222 PP

>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.5    0.0082        18       7      83 ..     495     571 ..     489     586 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0082
       Sec62   7 rakkvvralksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkl 83 
                 ++ k+  +l+++++k++s+ +++ + e+ ++e++e+ + e++++ ++++ ++++e+e+++++ee+++++++    + 
  CDO71903.1 495 KVAKAAPSLRKPAQKASSRAETTPEGEDAEEEEEEERSAEEEEEYMQVEYDQEEEEEEEDEEEEEEEEEDDEAAAHA 571
                 45555556666666655555554444444444445555555555555555555555555444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1727  (0.0963244); expected 358.6 (0.02)
Passed bias filter:                      781  (0.0435607); expected 358.6 (0.02)
Passed Vit filter:                       239  (0.0133304); expected 17.9 (0.001)
Passed Fwd filter:                        61  (0.00340231); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.21u 0.35s 00:00:01.56 Elapsed: 00:00:00.50
# Mc/sec: 4726.82
//
Query:       CDO71904.1  [L=206]
Description: hypothetical protein BN946_scf184940.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-62  208.8   0.6    3.9e-62  208.6   0.6    1.0  1  Ras          Ras family
    8.4e-35  119.6   1.0    8.9e-35  119.5   0.1    1.5  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.5e-16   59.2   0.1    4.4e-16   58.8   0.1    1.1  1  Arf          ADP-ribosylation factor family
    4.9e-05   22.8   0.1    6.1e-05   22.5   0.1    1.3  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    9.3e-05   22.1   0.5    0.00028   20.5   0.5    1.9  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0002   21.4   0.0     0.0003   20.9   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00041   20.3   0.4       0.17   11.7   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
    0.00067   19.1   0.1     0.0012   18.3   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0014   19.1   0.1      0.073   13.5   0.0    2.3  2  AAA          ATPase family associated with various cellular a
     0.0018   17.8   0.0     0.0085   15.6   0.0    1.8  1  FeoB_N       Ferrous iron transport protein B
     0.0028   18.0   0.0     0.0062   16.9   0.0    1.3  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.024   14.8   0.6      0.038   14.2   0.5    1.4  1  SPATA19      Spermatogenesis-associated protein 19, mitochond
      0.063   13.6   0.0       0.16   12.2   0.0    1.6  1  AAA_22       AAA domain
      0.064   13.0   0.0       0.15   11.9   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
      0.077   13.0   0.0       0.12   12.4   0.0    1.6  1  AAA_5        AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.6   3.3e-65   3.9e-62       1     161 [.      10     170 ..      10     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 3.3e-65
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK++lllrf++d F+++y sTigvdf++++i++dgk+vkl+iwDTAGqe+f++++ +yyr+a+gi++vyd+t+ e+f+nvk w++ei +
  CDO71904.1  10 KLLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTIQLDGKTVKLQIWDTAGQERFRTIAAAYYRGAHGIIMVYDVTEMETFSNVKVWLQEIDK 108
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+e v+ +++GnK+Dl e+++v+++ ++e+a +l+++f+etSAk+++nveeaf+ ++++i+
  CDO71904.1 109 HASEGVKKLMIGNKSDLVERKVVEYSVAKEFAGSLSIPFIETSAKNSTNVEEAFTLMAKTIK 170
                 **********************************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.1   7.5e-38   8.9e-35       1     119 [.      10     124 ..      10     125 .. 0.91
   2 ?   -2.8   0.1       5.9   7.1e+03      15      31 ..     164     180 ..     149     190 .. 0.58

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 7.5e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ll rf ed f++++ stigvdf+ +++ +++g       k+vkl+iWDtaGqerfr+++  y+r+a+ +i+vyd    ++++n+k
  CDO71904.1  10 KLLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTI-QLDG-------KTVKLQIWDTAGQERFRTIAAAYYRGAHGIIMVYDvteMETFSNVK 100
                 89**********************************98876.4444.......689********************************76555789*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                  Wl+e++k+a++  + +++gnk D
  CDO71904.1 101 VWLQEIDKHASEGvKKLMIGNKSD 124
                 *********99863789*****99 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.9
                 HHHCHCT-CCC-EEETT CS
         Roc  15 llkrfvedkfsekekst 31 
                 l+ + ++d+++++++  
  CDO71904.1 164 LMAKTIKDDIDTQRQDS 180
                 44444444444444444 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   3.7e-19   4.4e-16      15     173 ..       9     167 ..       3     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 3.7e-19
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 +++ll+G  + GK+ +l ++ ++ +++    Tig  f++++++   k++k+++wD  Gqe+ R +   Y++  +++i v D+++ e +++ k  L+++ 
  CDO71904.1   9 FKLLLIGDSGVGKSCLLLRFAEDAFTDsYLSTIGvdFKIRTIQLdgKTVKLQIWDTAGQERFRTIAAAYYRGAHGIIMVYDVTEMETFSNVKVWLQEI- 106
                 799********************9987567787744788888877799*************************************************7. PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 +++  + v+ l+++NK Dl e     ++ e    +e  g+ ++  +++sa + ++++e+++ +++
  CDO71904.1 107 DKHASEGVKKLMIGNKSDLVER----KVVEYSVAKEFAGSLSIPFIETSAKNSTNVEEAFTLMAK 167
                 6677899***********9864....444455555666666777778888888888777776665 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   5.1e-08   6.1e-05       1     127 [.      10     129 ..      10     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.1e-08
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgn.ltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G sg GK+++    F++   +d    ++ +d +  ++++ g+ ++l++wD  Gqe+f + +     +  +r    +i V Dv++    e++++ 
  CDO71904.1  10 KLLLIGDSGVGKSCLLLR-FAEDAFTDSYLSTIGVDFKIRTIQLDGKtVKLQIWDTAGQERFRTIA-----AAYYRGAHGIIMVYDVTEM---ETFSNV 99 
                 89************9865.7777777777777778888888887765279**********998774.....7778889999999999933...345555 PP

   Gtr1_RagA  99 keilealrqy.speakvfvlihKmDliqed 127
                 k  l+++ ++ s+ +k  ++ +K Dl++++
  CDO71904.1 100 KVWLQEIDKHaSEGVKKLMIGNKSDLVERK 129
                 555555544314555555566788888654 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.5   2.3e-07   0.00028      56     190 ..      45     167 ..       8     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.3e-07
                 SSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHH CS
    GTP_EFTU  56 iksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqk 149
                  k+ +i+l+  +k+ ++++ Dt G + F     + +r ++g ++v d++e      v++  +e+ ++a +egv+  ++ NK D ++ ++ e    v ++
  CDO71904.1  45 FKIRTIQLD--GKTVKLQIWDTAGQERFRTIAAAYYRGAHGIIMVYDVTEMetfsnVKVWLQEIDKHA-SEGVKKLMIGNKSDLVERKVVEY--SVAKE 138
                 466677777..*******************99999**************8833333444444444444.4789999*********7766443..34444 PP

                 HHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 150 lsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +             g+  +p++ +Sa++  +v++ +  + +
  CDO71904.1 139 F------------AGSLSIPFIETSAKNSTNVEEAFTLMAK 167
                 5............2234678888888888888776665555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.5e-07    0.0003       2     100 ..      11     106 ..      10     129 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.5e-07
                 EEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeel 97 
                  +++G + vGKS L+ +  ++  +    ++ g+  +i++++++ k  +++++Dt+G  e   + + ++ a+ +   a+ i++v d++  e++++++  l
  CDO71904.1  11 LLLIGDSGVGKSCLLLRFAEDafTDSYLSTIGVDFKIRTIQLDGKTVKLQIWDTAG-QE---RFRTIAAAYYR--GAHGIIMVYDVTeMETFSNVKVWL 103
                 579***************9973322233333444444444444333679*******.44...22355555553..599*******77422333333333 PP

                 HHH CS
    MMR_HSR1  98 eel 100
                 +e+
  CDO71904.1 104 QEI 106
                 333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00015      0.17     103     121 ..      12      30 ..       9      82 .. 0.87
   2 !    7.0   0.1    0.0041       4.9      43      98 ..     110     166 ..      83     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                  EEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallp 121
                  +l+G SGvGKS L+ ++++
   CDO71904.1  12 LLIGDSGVGKSCLLLRFAE 30 
                  79***********977665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0041
                  HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkellk 98 
                   ++g++ +++ nK Dl+e++  e++  ke   +l ++++ +sak+++++ee  +l++
   CDO71904.1 110 ASEGVKKLMIGNKSDLVERKVvEYSVAKEFAGSLSIPFIETSAKNSTNVEEAFTLMA 166
                  57889999999*******999788899999999************999998666555 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     1e-06    0.0012       6     125 ..      11     126 ..       8     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
                 EEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 +ll+G s  GK  l+ r  +d++++++ S     +  ++   + k  kl++ D  G+e++r+       + + ++g++ v D t       +v  +l e
  CDO71904.1  11 LLLIGDSGVGKSCLLLRFAEDAFTDSYLSTiGVDFKIRTiqLDGKTVKLQIWDTAGQERFRTIAAA---YYRGAHGIIMVYDVTE-METFSNVKVWLQE 105
                 79***************************97666666663345677788899*********86555...58899*****999874.4566777777777 PP

                 HHHHHHHHTT---EEEEEE-TTST CS
       SRPRB 102 illiteklkdavdiliACnKqelf 125
                 i  +     ++v+ l+  nK++l+
  CDO71904.1 106 IDKHAS---EGVKKLMIGNKSDLV 126
                 655444...677767777777765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.1e-05     0.073       1     118 [.      11     129 ..      11     134 .. 0.76
   2 ?    3.6   0.0     0.072        87      14      44 ..     135     167 ..     133     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-05
                 EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeerv 85 
                 +ll+G  G+GK+ l    a+++             +++ ++++g+++  + +  ++++++r + ++  + a + i+++ ++ ++ + +           
  CDO71904.1  11 LLLIGDSGVGKSCLLLRFAEDAftdsylstigvdfKIRTIQLDGKTVKlQIWDTAGQERFRTIAAAYYRGA-HGIIMVYDVTEMETFS----------N 98 
                 69*******************66665666665555788999999999967788899999999999988888.8999988888886555..........5 PP

                 HHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA  86 vnqLlteldgvkkkeskvivigatnrpdkldpa 118
                 v++ l+e+d+  ++   v  ++++n+ d ++++
  CDO71904.1  99 VKVWLQEIDKHASE--GVKKLMIGNKSDLVERK 129
                 77777777777773..46777777777766665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.072
                 HHHHHHHHHTHEEEEEETTTCSSS..STTHHHH CS
         AAA  14 lakavakelgvefleisgsellsk..yvgesek 44 
                 +ak  a +l+++f+e+s+++ ++    +  ++k
  CDO71904.1 135 VAKEFAGSLSIPFIETSAKNSTNVeeAFTLMAK 167
                 79999999**********998832223333333 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.1e-06    0.0085       2     152 ..      10     161 ..       9     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.1e-06
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEE..EEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHH..HHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkev..eivDlPGiYslsayseeekvardflleeepdvvvnvvdatnler..nLy 96 
                 ++ l+G+  vGk+ l+ + ++   + +  + + v+ k  +++l+gk+v  +i D  G        +  ++a  +   + ++ ++ v d t++e   n+ 
  CDO71904.1  10 KLLLIGDSGVGKSCLLLRFAEDAFTDSYLSTIGVDFKIRTIQLDGKTVklQIWDTAGQ------ERFRTIAAAYY--RGAHGIIMVYDVTEMETfsNVK 100
                 5679999999999999999999999999999999999999999886661155565554......33445666665..577899********99722555 PP

                 HHHHHHHT....TSSEEEEEETHHHHHHTTEEE-H.HHHHHHHTS-EEEEBTTTTBTHHHH CS
      FeoB_N  97 Ltlqllel....gvpvvlalnmideaekkgieidl.kkLsekLgvpvvktsakkkegieel 152
                 + lq ++     gv+ +++ n++d +e+k +e  + k+++ +L +p ++tsak+++++ee 
  CDO71904.1 101 VWLQEIDKhaseGVKKLMIGNKSDLVERKVVEYSVaKEFAGSLSIPFIETSAKNSTNVEEA 161
                 55555543222246778889***********99862679******************9985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.2e-06    0.0062      27      88 ..      11      76 ..      10     125 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.2e-06
      AAA_16 27 vllsGesGvGKsslvrellralekd............ggiflrgkcdqlesaipysalaqalareellrqllde 88
                +ll+G+sGvGKs l+ ++++ + +d            + i l gk+++l       ++++++ + e +r ++++
  CDO71904.1 11 LLLIGDSGVGKSCLLLRFAEDAFTDsylstigvdfkiRTIQLDGKTVKL-------QIWDTAGQ-ERFRTIAAA 76
                79*************9999988888677666555533333355555555.......77777755.777777665 PP

>> SPATA19  Spermatogenesis-associated protein 19, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.5   3.1e-05     0.038       5      45 ..      89     129 ..      86     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
     SPATA19   5 evveseavsvvqhwlkkteeeasqdikeklsinsppthgqd 45 
                 +v+e e+ s v+ wl+  ++ as+++k+ +  n + +  ++
  CDO71904.1  89 DVTEMETFSNVKVWLQEIDKHASEGVKKLMIGNKSDLVERK 129
                 89****************************99998765444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.16       8      29 ..      11      32 ..      10      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                l+++G sG+GK+ ll r++e +
  CDO71904.1 11 LLLIGDSGVGKSCLLLRFAEDA 32
                689**************99876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.15      25      39 ..      11      25 ..       6      32 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      AAA_29 25 tlltGpsGsGKSTll 39
                 ll+G+sG+GKS ll
  CDO71904.1 11 LLLIGDSGVGKSCLL 25
                69**********997 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.9e-05      0.12       2      21 ..      11      30 ..      10     118 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.9e-05
                EEEE--SSSSHHHHHHHGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaa 21
                +lL+G++G+gKs l  r+a+
  CDO71904.1 11 LLLIGDSGVGKSCLLLRFAE 30
                89**************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1455.86
//
Query:       CDO71905.1  [L=1242]
Description: hypothetical protein BN946_scf184940.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-41  142.2   0.1    2.5e-41  141.1   0.1    1.6  2  IMS        impB/mucB/samB family
    5.1e-28   97.3   1.7    5.1e-28   97.3   1.7    2.0  2  REV1_C     DNA repair protein REV1 C-terminal domain
    3.6e-13   50.3   0.0      1e-12   48.8   0.0    1.8  1  IMS_C      impB/mucB/samB family C-terminal domain
    1.7e-08   34.8   0.0    3.5e-08   33.7   0.0    1.6  1  BRCT_2     BRCT domain, a BRCA1 C-terminus domain
    8.7e-05   22.6   0.0    0.00032   20.9   0.0    2.1  2  IMS_HHH    IMS family HHH motif
    9.4e-05   21.7   5.5     0.0019   17.6   0.3    3.2  3  UBM        Ubiquitin binding region
    0.00047   20.0   0.1     0.0022   17.9   0.0    2.1  2  PTCB-BRCT  twin BRCT domain
     0.0038   17.6   0.1      0.025   15.0   0.1    2.4  1  BRCT       BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.035   14.4   0.0    1.8  1  LIG3_BRCT  DNA ligase 3 BRCT domain
      0.013   15.8   0.0       0.08   13.3   0.0    2.4  2  DUF1805    Domain of unknown function (DUF1805)


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.1   1.4e-44   2.5e-41       2     149 ..     470     636 ..     469     637 .. 0.97
   2 ?   -4.1   0.0         8   1.4e+04      32      47 ..    1025    1040 ..    1002    1041 .. 0.79

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 1.4e-44
                 EETTHHHHHHHHHT.T-TTS-EEEEET..........TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEE CS
         IMS   2 DmdaFyasverardpeLkgkPvvvaqgsek......rgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvek 94 
                 D+d+F++s+ ++++p+L+gkPvvv++ + +      ++ ++++syeAra+G+k gm++++a+klcp ++++++++++y+++s ++++il+ + ++ ++ 
  CDO71905.1 470 DFDSFFVSAGLIDRPHLRGKPVVVCHSQGStgggssTSEIASASYEARAFGIKGGMSLQQARKLCPTVVTIPYEFQRYKQFSLQFYTILMAH-ADDLQA 567
                 9**************************9999*************************************************************.779*** PP

                 EETTEEEEE-HHHHHHHH-S..............HHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS  95 asiDEayldltgleelaese..............gaalakelrkaikeelgltvsiGiasnkllAKlas 149
                 +s+DEa +d+t+ + + ++e              ++++a+++r+++ + +g++vsiGia+n +lA+las
  CDO71905.1 568 VSVDEALIDVTSSVARIRAElveraddaqeavdpAKDFAEAIRAQVRKVTGCEVSIGIANNIMLARLAS 636
                 ************8888888888999*******************************************9 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8
                  .TEEEEE-HHHHTTT- CS
         IMS   32 rgiviavsyeArayGv 47  
                  +++v   ++e r+yG+
  CDO71905.1 1025 TSSVKVTNNELRKYGI 1040
                  4677788999999998 PP

>> REV1_C  DNA repair protein REV1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       6.6   1.2e+04      53      69 ..     385     401 ..     373     407 .. 0.52
   2 !   97.3   1.7   2.8e-31   5.1e-28       1      92 []    1127    1239 ..    1127    1239 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.6
      REV1_C  53 lleeeeeskeeeageaW 69 
                 l+ e +e++e+ ++eaW
  CDO71905.1 385 LVAEAQEKAENGGTEAW 401
                 33333344555555555 PP

  == domain 2  score: 97.3 bits;  conditional E-value: 2.8e-31
      REV1_C    1 dvrdlleaWveafkeegPneeDvealakyLkkvv....eeerdlekavavlkwlrvlleee.................eeskeeeageaWekafrev 76  
                  dv++++e+Wv +fke++Pn++Dv+++ak+L+++v    ++++++e+avav kw+ vll+++                 ++ ++e++g+aW+kafrev
  CDO71905.1 1127 DVQRVIESWVAGFKEHPPNQRDVDYFAKFLVQCVdggrSSDTGVERAVAVAKWWLVLLRRHfgawenaatsdeceeqrRGHTAESVGRAWWKAFREV 1223
                  89***********************************99**************************************9999**************** PP

      REV1_C   77 keavqeavrkrgggkl 92  
                  k++++ea+r+++gg+l
  CDO71905.1 1224 KARMDEAARRKFGGCL 1239
                  *************986 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   5.7e-16     1e-12       3     111 ..     720     848 ..     718     853 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.7e-16
       IMS_C   3 earpepksissektfpepyd.esklkkelreLaeelarrLrdkglvartitlklrys................dfhasrsatL....prptsdtreile 80 
                 e ++++ks+s+  +++ +++ +++++  ++++aee++rrL +  + +r++tlk+  +                +  ++++++L    +r+tsd++ i e
  CDO71905.1 720 ESDKPRKSVSCDINYGIRFEnNEQAQTFVYQMAEEVSRRLSSIAMRGRSLTLKVLVRdpsapveapkflghglCEAHNKQTPLiapgGRATSDEKVIGE 818
                 56789************9984555******************************44455666777666666666669*********999********** PP

       IMS_C  81 aalkLlrrlidepglpirligvsasnlveka 111
                 +a +L+++ +  +++ +r ig++  +l++ +
  CDO71905.1 819 HAWRLMKSFNF-NPRDLRGIGIQIQKLEKAS 848
                 ***********.***************9433 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.9e-11   3.5e-08       2      84 ..     141     242 ..     140     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.9e-11
      BRCT_2   2 sklFeglrFYin................daepspsreklkklIeknGGevvetitsa..vyiviaesneee.laekrkrrvvspkyIkdCikkgkllpl 81 
                 sk+F+gl+ Y++                +   +ps ++l+++I ++GG + +  +++  v+++i+ s +    +e ++ +vv+p+++ d+i++g llp 
  CDO71905.1 141 SKIFRGLQIYVRpfsgfplfirthtaqiNGWTEPSVQDLRQMIVQHGGIFHAYLDKKslVTHIITCSLTPAkIREFKHMKVVRPDWLVDSIQAGALLPW 239
                 6899999999966666667777888888777889****************99997777766666655544469999*********************** PP

      BRCT_2  82 eny 84 
                 ++y
  CDO71905.1 240 QDY 242
                 **9 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-07   0.00032       1      31 [.     649     680 ..     649     681 .. 0.97
   2 ?   -3.0   0.0       6.7   1.2e+04      14      21 ..     832     839 ..     832     843 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.8e-07
     IMS_HHH   1 pddvkefLwplpitkipGiGgklgek.LeklG 31 
                 p++v+e+++ l+i +++G+G +  +k LeklG
  CDO71905.1 649 PEEVPELMATLDIDDLHGFGYSARQKaLEKLG 680
                 799****************************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.7
     IMS_HHH  14 tkipGiGg 21 
                 ++++GiG 
  CDO71905.1 832 RDLRGIGI 839
                 699***95 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.7   6.6e+03      10      16 ..      18      24 ..      18      24 .. 0.85
   2 !    5.4   0.1    0.0072        13      10      24 ..     939     953 ..     933     960 .. 0.85
   3 !   17.6   0.3     1e-06    0.0019       8      24 ..    1039    1055 ..    1039    1062 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.7
         UBM 10 DpsFLaa 16
                Dp+FL a
  CDO71905.1 18 DPEFLRA 24
                9999976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0072
         UBM  10 DpsFLaaLPpdLReE 24 
                 D+s ++aLP+d R E
  CDO71905.1 939 DMSVFEALPDDVRKE 953
                 99*********9965 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1e-06
         UBM    8 giDpsFLaaLPpdLReE 24  
                  giDp+ +aaLPp++++E
  CDO71905.1 1039 GIDPDVFAALPPEMQRE 1055
                  69**************9 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.1   3.7e+03       4      32 ..      57      85 ..      56      86 .. 0.86
   2 !   17.9   0.0   1.2e-06    0.0022       5      63 .]     168     226 ..     165     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.1
                EEECB-TTCHHHHHHHHHHTT-EEESSEE CS
   PTCB-BRCT  4 cvtgysgddrkslqklieamGaeyskdlt 32
                ++t+ + +++ sl +  ++ Ga+y++ lt
  CDO71905.1 57 TLTQRHLKRSRSLDNFDVDEGAQYHGVLT 85
                7888888999999999999*****99886 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.2e-06
                 EECB-TTCHHHHHHHHHHTT-EEESSEETT..-SEEEECSS-CHHHHHHHHCT.-EEE-CHH CS
   PTCB-BRCT   5 vtgysgddrkslqklieamGaeyskdltks..vTHLicksgeGekyekAkkwg.ipvVsveW 63 
                 + g+++ + ++l+++i+++G+ +++ l k+  vTH i  s +  k +   +++ ++vV+++W
  CDO71905.1 168 INGWTEPSVQDLRQMIVQHGGIFHAYLDKKslVTHIITCSLTPAKIR---EFKhMKVVRPDW 226
                 6799***********************554469****9998888875...444467788888 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.4e-05     0.025      23      79 .]     177     231 ..     139     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHTTCEEESSCSTT..SSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT  23 deleelikehGGkvttevskk..tthlvvgepesrslkylealklnipivheewlldci 79 
                 ++l+++i  hGG ++ +++kk  +th+++ +   +  k  e +    ++v+++wl+d+i
  CDO71905.1 177 QDLRQMIVQHGGIFHAYLDKKslVTHIITCSL--TPAKIREFK--HMKVVRPDWLVDSI 231
                 456***********9999776448****9999..656666555..5689********97 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.9e-05     0.035      27      79 ..     183     234 ..     167     236 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
   LIG3_BRCT  27 fiAydGdlvke..ekekeaTHvvvskkeeskkekeksknakaVtaewiwesIkkr 79 
                 ++  +G + +   +k++ +TH+++++     +++++ k+ k+V ++w+ +sI+++
  CDO71905.1 183 IVQHGG-IFHAylDKKSLVTHIITCSL--TPAKIREFKHMKVVRPDWLVDSIQAG 234
                 555555.44331135566*******88..899999*****************975 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.4e-05      0.08      36      59 ..     507     530 ..     505     533 .. 0.92
   2 ?   -3.0   0.0       5.3   9.4e+03      36      53 ..    1026    1043 ..    1023    1044 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.4e-05
                 SB-SEE-HHHHHTT--TT-BHHHH CS
     DUF1805  36 apvesvteaAeelGikeGmtgkea 59 
                 ++++s++ +A++ Gik Gm++++a
  CDO71905.1 507 SEIASASYEARAFGIKGGMSLQQA 530
                 79*******************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
                  SB-SEE-HHHHHTT--TT CS
     DUF1805   36 apvesvteaAeelGikeG 53  
                  + v+ ++++ +++Gi ++
  CDO71905.1 1026 SSVKVTNNELRKYGIDPD 1043
                  6799999********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 8116.57
//
Query:       CDO71906.1  [L=406]
Description: hypothetical protein BN946_scf184940.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-21   76.9   0.0    3.1e-21   75.8   0.0    1.5  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    1.2e-08   34.4   0.0    2.5e-08   33.3   0.0    1.5  1  HHH            Helix-hairpin-helix motif
     0.0037   17.8   0.2        1.4    9.6   0.0    2.5  2  HHH_5          Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.026   14.9   3.4      0.026   14.9   3.4    2.0  2  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   6.9e-25   3.1e-21       1     105 [.     167     305 ..     167     307 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 6.9e-25
                 HHHHHHTTS-HHHHHHHHHHHHHHHS.HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg.fptpedladadeekLrelirelGfyrrKakyikelArilv................................ 66 
                 vs +ls+qt+de++ +++++l+e++g +++++++++ade  + e+i ++Gf+rrK +y+k++A++l                                 
  CDO71906.1 167 VSLMLSSQTKDEVTDAAVTKLREAVGgSLSVDAILQADENTISEAICKVGFWRRKTQYVKQAAQKLHdefdgdipktvdelcslpgvgpkmaflalqia 265
                 799************************************************************************************************ PP

                 S-SSS--TTSHHHHHHHHHHTTSSSS.TTHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikek.ktkkkvekkleel 105
                  k +++i vDvhv+ri +rl+++k+  k++++++  l+ +
  CDO71906.1 266 WKLNAGIGVDVHVHRITNRLGWHKPPtKNPEETRLNLQSW 305
                 55679*******************9667777777777555 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   5.7e-12   2.5e-08       1      24 [.     235     258 ..     235     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 5.7e-12
                 SHHHHHTSSHHHHHTSTT-SHHHH CS
         HHH   1 sleglipasreeLlalPGVGpktA 24 
                 +++g+ip +++eL++lPGVGpk+A
  CDO71906.1 235 EFDGDIPKTVDELCSLPGVGPKMA 258
                 599********************9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0058        26      13      39 ..     182     210 ..     177     216 .. 0.82
   2 !    9.6   0.0   0.00031       1.4       2      15 ..     245     258 ..     240     262 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0058
                 HHHHHHHTT.T.--SHHHHHHS-HHHHHT CS
       HHH_5  13 ktAlallsa.G.iesvedlaaadveeLak 39 
                 + + +l +a G   sv+++++ad++++++
  CDO71906.1 182 AAVTKLREAvGgSLSVDAILQADENTISE 210
                 66788999985378***********9987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00031
                 HHHHTSTT--HHHH CS
       HHH_5   2 eeLlsvsGiGpktA 15 
                 +eL s++G+Gpk+A
  CDO71906.1 245 DELCSLPGVGPKMA 258
                 45556666666665 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.5         2   8.9e+03       3       7 ..     105     109 ..     105     109 .. 0.91
   2 ?   14.9   3.4   5.7e-06     0.026       1      17 []     326     343 ..     326     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
  EndIII_4Fe-2S   3 ARkPk 7  
                    +RkPk
     CDO71906.1 105 PRKPK 109
                    8***8 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 5.7e-06
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaD.lC 17 
                    CT+  PkC++C L+D lC
     CDO71906.1 326 CTPVAPKCDQCELSDgLC 343
                    ***************888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2751.92
//
Query:       CDO71907.1  [L=476]
Description: hypothetical protein BN946_scf184940.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-52  177.0   0.3    8.2e-51  172.7   0.3    2.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    1.9e-41  142.2   0.6    2.5e-41  141.8   0.6    1.2  1  TENA_THI-4    TENA/THI-4/PQQC family
      6e-05   22.5   0.7     0.0034   16.7   0.0    2.2  2  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.3   1.4e-54   8.2e-51      64     246 .]       1     233 [.       1     233 [. 0.95

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 1.4e-54
                   EEE-S--SHHHHHHHHHHH.HHT.....TS.SEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT.....---SSHHHHHHHH CS
  Phos_pyr_kin  64 vKiGmlasaeiievvaekl.kky.....kv.pvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlg.....ekikteedmkeaa 148
                   +K+Gml++a+  +vva++l ++y     ++ p+++DPV+v++sg++ll++eav++l eeL+plat+itPN pEae Ll+      ki+t+edm +a 
    CDO71907.1   1 MKTGMLFDAANTRVVAQTLrSHYanascSLpPLIVDPVCVSTSGHTLLASEAVQVLIEELCPLATLITPNKPEAELLLSwskhaVKINTLEDMISAS 97 
                   7******************65543333346789*********************************************9988888899********* PP

                   HHHHHTT-SEEEEEEGGS-S......................................SSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHH CS
  Phos_pyr_kin 149 kkllklgakaVlikGghleg......................................eeavvtdvlydgeeveeleaerietknthGtGCtlssai 207
                   +kll+lg+kaVl+kGgh+e                                       +   v+dvl + ++++ + ++r+++++thGtGCtls+ai
    CDO71907.1  98 EKLLALGSKAVLLKGGHVELtladveklasqrrdvavvreellldnmeilqvnerdfsTGRLVVDVLSEAQTTTLFVSPRVDSNSTHGTGCTLSAAI 194
                   *****************97799***********************************988999********************************** PP

                   HHHHHCTSSHHHHHHHHHHHHHHHHHCG-BSTSSS-B-- CS
  Phos_pyr_kin 208 aaelakgesleeAvkkAkeyvteaikealelgkgagpvn 246
                   a+ l kg+sl eA+++A+++++  i+ a+ +g+g+gp+n
    CDO71907.1 195 ASLLGKGHSLFEAIREATSFTHVGIETAFPVGHGHGPLN 233
                   *************************************86 PP

>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.6   4.2e-45   2.5e-41       3     208 ..     261     473 ..     259     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 4.2e-45
                 HCHHHHHHHHCSHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-HHHHHCTTT--HH CS
  TENA_THI-4   3 qlrpiwkeyinHpFvkalakGtlpreqfqayviqdylylknfvrvlaiilskssdlevrrelesrivdhdgeeielhlrlaealGlsreelsktkpspa 101
                 ++ + wkey++H Fvk+la+Gtlp+e+f ++++qdylylk ++r++++ ++kss+ + ++   + iv    +e+++h+ ++ ++G+s+ +l +t +sp 
  CDO71907.1 261 SAAQTWKEYVQHDFVKQLAQGTLPKECFLHFIKQDYLYLKYYARAYGLLVAKSSTYSSIQSATQTIVNV-INEVSTHKAFCAQWGISEADLAATPESPS 358
                 67889******************************************************6666666665.5789************************* PP

                 HHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHHHHHCCHHH......S-TSCHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHTSHHHH..HHHHHHH CS
  TENA_THI-4 102 tkayvrylldlarrgslaeavaallpclfvyqeiaerlkeklr......alegpeyyewvkeyaseefraaveeakrllerllakvsdeq..leelqei 192
                 t+ay +yl+d++ +g+ a++++al +cl++y e+   lk++        +leg+ y +w+++y+ e+++ av+ +++ +e l    ++ +   +e  +i
  CDO71907.1 359 TTAYGAYLIDIGLQGDSAKLIMALAACLLGYGEVGLWLKKEAAtanswvKLEGNTYLKWIEDYSGEQYQGAVKLGIETIEALAVADPPNAlrFQEWCTI 457
                 **********************************9777766667889999*************************************9996678999** PP

                 HHHHHHHHHHHHHHHH CS
  TENA_THI-4 193 flkalefetsfltmal 208
                  +k +++e+ f+++++
  CDO71907.1 458 WEKCTRLEKGFWDASM 473
                 ************8776 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.7e-07    0.0034     172     228 ..      46     113 ..      11     126 .. 0.84
   2 !    4.0   0.1    0.0042        25     235     283 ..     165     212 ..     155     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.7e-07
                 H......HHHHHHHHHCTESEEEEEHHHHHHHHTSCT.....HSHHHHHHHHHHHHHTTSSEEEEEEG CS
        PfkB 172 q......fkeallellaladllkpneeElealtgekl.....edieealaalhklkakgaktvvvtlG 228
                        ++  ++el +la+l++pn  E+e l++ ++     ++ e+ + a +kl+a g k v+ + G
  CDO71907.1  46 TllaseaVQVLIEELCPLATLITPNKPEAELLLSWSKhavkiNTLEDMISASEKLLALGSKAVLLKGG 113
                 3444455788899******************9998888899999999999999999999999988766 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0042
                 EETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
        PfkB 235 vekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfan 283
                 +e +++  + + p v+  +t G+G +  +++++ l +g+sl ea+r a+
  CDO71907.1 165 SEAQTTTLFVS-PRVDSNSTHGTGCTLSAAIASLLGKGHSLFEAIREAT 212
                 44666666667.78******************************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.48
# Mc/sec: 3005.22
//
Query:       CDO71908.1  [L=397]
Description: Polysaccharide Lyase Family 14 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    7.9  11.9        1.8    7.5  11.9    1.1  1  Miga      Mitoguardin
        4.7    6.9  21.3        6.4    6.4  21.3    1.1  1  DUF5349   Family of unknown function (DUF5349)
        5.7    5.7   7.0        6.9    5.4   7.0    1.1  1  Apt1      Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Miga  Mitoguardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.9   0.00029       1.8      16     119 ..       6     114 ..       2     134 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00029
        Miga  16 kvllavalgavvlallarylkrrrekkkq....kssaeqeelakevlktasvkkrasekksrssssksndtlslasskassssaklsgslqsla.svks 109
                  +l+ va++a+++++ a  l+rr  + ++    +ss ++ + +++v++++s+ +++s+k s+ +ss++ ++   a+s+++++s+k  +s+++ + +v+s
  CDO71908.1   6 TLLIFVAFAAMSVSVSAAPLQRRTCRPHSqiaaASSSTHASSTSHVTTATSSAQATSSKVSNAPSSSKATSTEAATSTKAATSTKAATSTKAAStKVAS 104
                 57899*****************98776664543333333334444555555666677777777777777777776666666666666666665523444 PP

        Miga 110 vnsssssaaa 119
                 ++ sss++ +
  CDO71908.1 105 ITASSSATPS 114
                 4444443333 PP

>> DUF5349  Family of unknown function (DUF5349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  21.3    0.0011       6.4     178     296 ..      37     151 ..      14     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
     DUF5349 178 nsasfstsyepsnkspvltsstsssassydsseFdyilPsssaassstsatssssnnslntnvstsaslsgdllddlpvaptasslvgdlsstetvsnl 276
                      s+s   s  s+v t +  ssa+   ss+ ++  Psss+a+s+  ats + + s++ + st +++s+++   + ++++++s vg  ss+  ++ l
  CDO71908.1  37 AA--ASSSTHASSTSHVTTAT--SSAQ-ATSSKVSN-APSSSKATSTEAATSTKAATSTKAATST-KAASTKVASITASSSATPSAVGAASSSTLLKEL 128
                 33..34444455566666555..4444.44899999.9******888888888888887766555.455666777777779999999999999999999 PP

     DUF5349 277 ...sasqallessaassslglsn 296
                    + s   ++ssa ++ l+l++
  CDO71908.1 129 fpvPHSAFWTTSSASPDALPLND 151
                 87666667778888889999886 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.0    0.0012       6.9     315     385 ..      41     105 ..      14     170 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0012
        Apt1 315 eeddesdeesessssssssssssassssssssrssslelrlkptsstssssssessssssskkrsseessl 385
                 ++++ s++++ ++ +ss +++ss+ s++ sss+++s e        ts++ ++++++ +s+k +s++  s+
  CDO71908.1  41 SSTHASSTSHVTTATSSAQATSSKVSNAPSSSKATSTEAA------TSTKAATSTKAATSTKAASTKVASI 105
                 2222222222222222222222222222222222222222......1111111111111111222221122 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1716  (0.0957109); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                       165  (0.00920297); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.35s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 2476.76
//
Query:       CDO71909.1  [L=302]
Description: Polysaccharide Lyase Family 14 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2187.61
//
Query:       CDO71910.1  [L=313]
Description: Polysaccharide Lyase Family 14 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2152.40
//
Query:       CDO71911.1  [L=427]
Description: hypothetical protein BN946_scf184940.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-27   96.0   0.0    2.8e-24   85.4   0.0    2.1  2  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is
     0.0026   18.4   0.9     0.0062   17.2   0.3    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.023   14.4   0.0    1.3  1  Esterase       Putative esterase
      0.015   14.8   0.0      0.087   12.3   0.0    2.0  2  Peptidase_S9   Prolyl oligopeptidase family
      0.037   13.3   0.0      0.074   12.3   0.0    1.6  1  Hydrolase_4    Serine aminopeptidase, S33
      0.076   12.8   0.0       0.11   12.2   0.0    1.3  1  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.095   12.6   0.0       0.19   11.6   0.0    1.5  1  Lipase_3       Lipase (class 3)
       0.18   10.5   0.0       0.27    9.8   0.0    1.2  1  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00012      0.26       6      56 ..      70     139 ..      65     140 .. 0.85
   2 !   85.4   0.0   1.2e-27   2.8e-24     126     339 ..     139     352 ..     138     370 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
                  XSSS---SSSSEEE....................EEEEEESSSTTSEEEEEEEEE.S.SSSS-EEESS-SH CS
  PAF-AH_p_II   6 kkklpavsGpysvG....................CedlmieeklrgvflRlyypldkadedredelWlPkk 56 
                  + +lp+++GpysvG                       +  +    +v + ++yp++  +e+ ++  W P++
   CDO71911.1  70 SRTLPNYTGPYSVGvrdlevpiprqsfgtfrhkrMPHVDAGIVVDTVLFTVFYPCEP-QEKPKYVAWFPNR 139
                  5689*************************9776655556666679**********64.799999*****85 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 1.2e-27
                  TT-EEEEE---SS-SSEEE.E-SSHHHHHHT.......--EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--.SS-GGGG CS
  PAF-AH_p_II 126 kGfvvaavEHrDesAaaty.vlkdklaaeeeeevvesrekewiklrkvkeeeevklrneqvkqRaqEcskaLkllreinlGepvenvlds.dfdlqql 221
                  +Gf+vaa+EHrD     ++ v  d +   +  + ++  +  w +l++   +++ +lr+eq+k R+ E+  +++ +++i++Ge ++++l++ d  + + 
   CDO71911.1 139 RGFIVAAIEHRDGTSPSSTiVAADGA--TTTLDWIQWSDLDWPELSEQP-KDDSVLRREQIKCRVAEIEAVIETMQQISKGEAPNELLKKpDASVWSA 233
                  7***********76655550544444..444458888888899999885.567789*******************************87625567777 PP

                  TT-EEEEEEEEEEETHHHHHHHHHHHH-.TTS-EEEEES---TTS-GGGGGG--S-EEEEEETTT--HHHHHHHHTT--TT.S-EEEEEETT--GGGG CS
  PAF-AH_p_II 222 KdnldtskvaviGHsFGgAtvikslsed.teFrcaialDaWmlPveeevyskvrqPllfinsekfqtaedikkmkkvvslk.keskvitvkGsvHqnf 317
                     +d s+ +++GHs Gg  +++ +++d  ++r  +a+D+ +  +     s+++ P+l++nse+    e  +  + + ++   + +v t++G+ H +f
   CDO71911.1 234 WRLVDASRPVLAGHSLGGSAALAVSAKDsYDYRAVVAFDPALQRLLP-WESSLPRPILVVNSEEVMEHEFKESFEIFAKTAtSDLQVYTISGTTHPSF 330
                  889*******************99999978*********98765543.45899***********977665555555544431345899********** PP

                  SGGGGSS-HHHHHHTTSS-SS- CS
  PAF-AH_p_II 318 sDftfvlgkligkvlklkgeid 339
                  sD+ ++l+  i k+  l+  +d
   CDO71911.1 331 SDVFLILPDAINKLTGLHCAAD 352
                  *************998887777 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   2.8e-06    0.0062      62     102 ..     228     277 ..     174     310 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
                    ...........TTSEEEEEETCHHHHHHHHHHCC.....EEEEES-..----T CS
  Abhydrolase_6  62 a.........gggpvvlvGHSlGGalalaaapla...lvvgvlldppptalpa 102
                    a         ++ ++vl GHSlGG+ ala+ +      ++ v+ dp   al  
     CDO71911.1 228 AsvwsawrlvDASRPVLAGHSLGGSAALAVSAKDsydYRAVVAFDP---ALQR 277
                    155556666677899**********999943333775444499999...3332 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.023     117     151 ..     242     276 ..     233     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S- CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivn 151
                  ++aG+S+GG++AL + +k    +  v +f p ++
  CDO71911.1 242 PVLAGHSLGGSAALAVSAKDSYDYRAVVAFDPALQ 276
                 689****************9999*99999997754 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   6.3e+02       7      26 ..     133     152 ..     128     158 .. 0.82
   2 ?   12.3   0.0   3.9e-05     0.087      60      99 ..     236     275 ..     228     311 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
                   HHHHHCCT-EEEEE--TTSS CS
  Peptidase_S9   7 lqlladrGyvvvvanirGsg 26 
                   ++++ +rG++v++++ r ++
    CDO71911.1 133 VAWFPNRGFIVAAIEHRDGT 152
                   578899*******9988655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.9e-05
                   S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE-- CS
  Peptidase_S9  60 yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvv 99 
                   +vd++r ++ G+S GG  ++a+ ++ +  ++a+va +p +
    CDO71911.1 236 LVDASRPVLAGHSLGGSAALAVSAKDSYDYRAVVAFDPAL 275
                   79*********************************98876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05     0.074      79     113 ..     243     277 ..     232     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
  Hydrolase_4  79 fllGhSmGGliallyllrypdkvaglilsaPalki 113
                  +l GhS+GG  al++ ++ + ++++++ + Pal+ 
   CDO71911.1 243 VLAGHSLGGSAALAVSAKDSYDYRAVVAFDPALQR 277
                  799*****************************975 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.1e-05      0.11      83     204 ..     196     332 ..     173     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
                    HHHHHHHHHHHHHHHHHTT......................--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG CS
  Abhydrolase_2  83 ikksaekleelidaelkkg......................ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkk 156
                    ik  + ++e++i+  ++ +                      +++sr ++ G S G+  al+ + + +  ++ +vaf  al     +es    ++  
     CDO71911.1 196 IKCRVAEIEAVIETMQQISkgeapnellkkpdasvwsawrlVDASRPVLAGHSLGGSAALAVSAKDSYDYRAVVAFDPALQRLLPWES---SLP-- 286
                    44444555555543332222255555777778888888888************************************99999888885...333.. PP

                    -EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS--HH CS
  Abhydrolase_2 157 lpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsidee 204
                     pil    + ++v++  +++ ++ + k++  + +  ++ g  H + ++
     CDO71911.1 287 RPILV--VNSEEVMEHEFKESFEIFAKTATSDLQVYTISGTTHPSFSD 332
                    24433..34556777777777777777777766666666666666555 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.4e-05      0.19      53      81 ..     228     256 ..     158     266 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
                 HHHHHHHHHTT-EEEEEEEETHHHHHHHH CS
    Lipase_3  53 kelkrllekypeysivvtGHSLGgalAlL 81 
                 +++ +  +     + v++GHSLGg+ Al 
  CDO71911.1 228 ASVWSAWRLVDASRPVLAGHSLGGSAALA 256
                 4444444444456779*********9975 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00012      0.27     166     207 ..     232     274 ..     227     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
                 HTSTTEEEEEEEEEEETHHHHHHHHHHHH-S.S-SEEEEES-S CS
        AXE1 166 aslpevDeeRvavlGasqGGalalavaalek.rikavvadyPf 207
                 ++   vD +R + +G+s GG+ alav+a ++ + +avva  P 
  CDO71911.1 232 SAWRLVDASRPVLAGHSLGGSAALAVSAKDSyDYRAVVAFDPA 274
                 56678**********************9865367888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3095.67
//
Query:       CDO71912.1  [L=674]
Description: hypothetical protein BN946_scf184940.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-50  171.2   0.0    2.9e-50  170.0   0.0    1.6  1  Mak10     Mak10 subunit, NatC N(alpha)-terminal acetyltransfe


Domain annotation for each model (and alignments):
>> Mak10  Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.0   1.6e-54   2.9e-50       2     165 ..      36     191 ..      35     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 1.6e-54
       Mak10   2 gqlvkdesFtLfeavsAleimdpkmDsgliapeleeeeedfdvsapllpeevlgimdrllasemaWhsgssLsqTvftclYveklllpspkalkeakfs 100
                 ++++ ++ FtL++a+sA+ei++p++Dsg+i +e+    ++fd+ +pllpeev++i+dr +a+em+Wh g++Lsq+vft l+v++l +++p+ l+  +  
  CDO71912.1  36 EEILLMDGFTLMDAMSAFEIGEPRLDSGMILAEQ--RRPPFDPLTPLLPEEVCWILDRSFACEMEWHAGKTLSQSVFTLLFVHHLPDINPEYLPPVE-- 130
                 68999*************************8874..5699****************************************************99998.. PP

       Mak10 101 rkedeekektelelvdkvLrayvlalvkfcdlvleelskevlyeeEDfvtnkyglslleeievee 165
                     +e++++++ l++ v+ra++l+l+k+cdl+++elsk+ + + ED++ +k+++slle+i++e 
  CDO71912.1 131 ----NEDPARPQWLITVVMRAAILGLLKCCDLAWRELSKNRVNDVEDWQGEKCDVSLLEGINAEI 191
                 ....4689*****************************************************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4791.85
//
Query:       CDO71913.1  [L=430]
Description: hypothetical protein BN946_scf184940.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-69  232.7   0.0    1.2e-68  231.6   0.0    1.5  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.27   11.3   0.0    1.7  1  NCD1          NAB conserved region 1 (NCD1)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.6   0.0   1.4e-72   1.2e-68       4     291 ..      70     383 ..      67     385 .. 0.96

  Alignments for each domain:
  == domain 1  score: 231.6 bits;  conditional E-value: 1.4e-72
                   S--EEEEEEETSSS-BGG.GHHHHHHHHHHHH...TTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTT CS
  tRNA-synt_1b   4 rplrvysGidPTgklHlG.ylvplkklvelqk...aghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewleh 96 
                   rp +v+sGi+PTg +HlG  l++l ++v+lq+    + +++  i+++hA++ +++   ++ l +++ ++ ++   +la+gldpe++ ++ q + l h
    CDO71913.1  70 RPRIVFSGIQPTGIPHLGnLLGALFNWVKLQReaaPEDKLIYSIVGWHALTLPQD---PKALSAARSDMLAV---LLAVGLDPERSIIFHQDDNLHH 160
                   6778**************99************99999******************...**************...********************** PP

                   HHHHHHHHHHHTTCBHHHHHHHHH..............CCHHCSSS...........C--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHH CS
  tRNA-synt_1b  97 lelaellrdlgklgslnrmlqfks..............vkkrleeg...........egislgeftYplLqaaDilllkadlvpgGsDQkqnielgr 168
                    ela++l++l+++g+l+rm+ +k                k+rl+ +           + +++g+ftYp+LqaaDil+++a++vp+G+DQ+q+iel r
    CDO71913.1 161 AELAWILNCLTPMGKLKRMTTWKVrviplhalaklltlLKSRLAASrnarddsevdeSLLNAGLFTYPVLQAADILAYRATHVPVGEDQQQHIELCR 257
                   ************************999999988888887777777358999999998789************************************* PP

                   HHHHHHHHH.....STTSS-EEEEET...-BBSTTSSSBTTCETTC..GC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHC CS
  tRNA-synt_1b 169 dlarrfnkk.....evfkkpegltvp...lltgldGekKmSKSagn..saIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavs 255
                   dla+ fn++      +f+ p+++++    +l++ d+ +KmSKS++   s+I L+d +++v +ki+ avtds+ ++++++ ++++  n l+++l a +
    CDO71913.1 258 DLAEIFNRTfkakrPLFPLPQHVVTTscrVLSLKDPSSKMSKSSPDlnSRILLTDTPAQVHSKIRGAVTDSQMGITYDPIERPGAAN-LLNILAACT 353
                   ************9999**9999999899*****************999***************************************.********* PP

                   CSEEESSHHHHHHHHHCCCCHHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 256 gkkpkreaeellaeevtklvhggdlkkalaealnel 291
                   g++       +++++++k  + g+lk ++aea++el
    CDO71913.1 354 GEEV----TAVAERYADK--GHGQLKADVAEAVEEL 383
                   *998....99********..9************997 PP

>> NCD1  NAB conserved region 1 (NCD1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     3e-05      0.27       7      52 ..     223     266 ..     219     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
        NCD1   7 elqlyrvLqranLlqYydvliaqGGDdveqlleaeeeefleimelv 52 
                  l +y vLq a++l+Y  + +  G D+ +++  +++  + ei +  
  CDO71913.1 223 GLFTYPVLQAADILAYRATHVPVGEDQQQHIELCRD--LAEIFNRT 266
                 5789*******************9999888877765..77777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3054.30
//
Query:       CDO71914.1  [L=163]
Description: hypothetical protein BN946_scf184940.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-05   22.4   0.0    0.00011   22.0   0.0    1.3  1  TFB6      Subunit 11 of the general transcription factor TFII


Domain annotation for each model (and alignments):
>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.1e-09   0.00011      24     102 ..      14      99 ..      10     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.1e-09
        TFB6  24 tpslqipyLlniaselldylekfppspra...tfklLrkLDkiFasLlaGeDvetge......tl.pGfeeglragmstTdkVRlksiv 102
                 ++sl++  Ll+++ ++l+ +++++p++++   +++ L+ LD+++ ++l+G+  + +e      +l pG    + + ms+T+  Rl+s+ 
  CDO71914.1  14 SASLRTTLLLRLTGDVLQSIPGYTPATETlplLLAWLNDLDQAWLAVLRGQAWDPEEcrgidvELpPGA---HCTPMSQTERTRLRSLL 99 
                 57899*********************99999999****************9665544222222231333...3469***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1142.50
//
Query:       CDO71915.1  [L=1033]
Description: hypothetical protein BN946_scf184940.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-13   50.3   1.9    1.7e-13   50.3   1.9    2.2  2  SUV3_C      Mitochondrial degradasome RNA helicase subunit C 
    8.2e-08   32.6   0.0    1.7e-07   31.6   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SUV3_C  Mitochondrial degradasome RNA helicase subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.12   1.1e+03      15      26 ..     601     612 ..     601     614 .. 0.87
   2 !   50.3   1.9   1.9e-17   1.7e-13       1      47 [.     690     736 ..     690     736 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.12
                 HHHHHH------ CS
      SUV3_C  15 lWLSyRfpevFp 26 
                 l+LS+Rf + F 
  CDO71915.1 601 LQLSFRFIDSFH 612
                 78*****99996 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.9e-17
                 -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH CS
      SUV3_C   1 LerLEslhkvldLYlWLSyRfpevFpdrelaeelkkeveekIeeaLe 47 
                 L++LE++hk+++LYlW SyR+  ++pd+ +a++l+ ++e ++e++Le
  CDO71915.1 690 LSHLETVHKIIVLYLWYSYRYTVAYPDQVKAFQLRMLTEFAMEWCLE 736
                 89********************************************7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.9e-11   1.7e-07      14     111 .]     412     518 ..     401     518 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.9e-11
                 TTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH........HHHH CS
  Helicase_C  14 eeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnv........tsyi 101
                 ++g+ ++ f++t   +l+    ++ k ++++a  +g+lp + r e  + fn  +  +dvL+ +d++++G++++  + V+    +++         + ++
  CDO71915.1 412 QKGDCAVAFSRTGIfTLK--GNIEAKTKLRCALAYGRLPPEIRSEQAALFNdpNSGYDVLVGSDAVGMGLNLKIKRIVFEAVSKWTGghmrvlsnSAIK 508
                 566667777776665665..66767779***********************888899***************75555555555555345566777**** PP

                 HHHTTSSSTT CS
  Helicase_C 102 qriGRtgRag 111
                 q +GR+gR+g
  CDO71915.1 509 QIAGRAGRYG 518
                 ********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 7495.33
//
Query:       CDO71916.1  [L=106]
Description: hypothetical protein BN946_scf184940.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-27   94.5   0.2    4.3e-27   94.2   0.2    1.1  1  MRP-S33   Mitochondrial ribosomal subunit S27


Domain annotation for each model (and alignments):
>> MRP-S33  Mitochondrial ribosomal subunit S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.2   2.4e-31   4.3e-27       1      88 []       7      92 ..       7      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 2.4e-31
     MRP-S33  1 arllelaklsarIFgevynptnlrtgsKvlrkrlkgplladYYpprivsfkqlkkllrellkfrDeaeefrlemvalrkrRGKgapkK 88
                arl +l++++++IF++ ynpt++rtg+K+lr+rl+gp+++ YY p+ +++ +++++    +k+ + +e +rl +v+++krRGKg pkK
  CDO71916.1  7 ARLAALTRMRCEIFQTAYNPTSVRTGAKYLRARLRGPSMIRYY-PDELTVAHFNRMPGG-FKIQNWEEYQRLADVEEKKRRGKGVPKK 92
                699****************************************.**********99998.***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 762.76
//
Query:       CDO71917.1  [L=607]
Description: hypothetical protein BN946_scf184940.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-17   62.9   0.0    4.2e-17   62.0   0.0    1.3  1  EF-hand_4      Cytoskeletal-regulatory complex EF hand
    1.8e-06   28.2 133.3     0.0011   19.3  51.6    4.7  5  DUF1720        Domain of unknown function (DUF1720)
    8.5e-05   21.8   0.0       0.08   12.5   0.0    2.8  2  EF-hand_1      EF hand
     0.0031   17.9   0.6      0.013   16.0   0.0    2.5  2  EF-hand_7      EF-hand domain pair
     0.0089   15.9   0.0          2    8.6   0.0    3.0  2  EF-hand_6      EF-hand domain
  ------ inclusion threshold ------
      0.032   13.7   0.8       0.36   10.3   0.6    2.3  2  FAD_binding_7  FAD binding domain of DNA photolyase
      0.054   11.7   5.3      0.087   11.0   5.3    1.3  1  EzrA           Septation ring formation regulator, EzrA
        1.1    9.7  16.7        2.2    8.7  16.7    1.4  1  Fez1           Fez1
        9.2    4.0   5.5         13    3.5   5.5    1.1  1  V_ATPase_I     V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.1e-20   4.2e-17       4      99 ..     244     338 ..     241     342 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.1e-20
   EF-hand_4   4 leeleikkyweifsglkpedn.kltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahl 99 
                 l + e+k+y +if++ +  +   ++g+ +  v+ +s l+ + l+kiw lad+++ gkl++ ef +am li+  +ng+  ++P+ lP  lvp s+++l
  CDO71917.1 244 LSKAEKKQYDQIFRAWDTGNTgFISGQTALEVFGQSGLDRNDLAKIWALADVENRGKLNLAEFHVAMGLIYRRLNGN--EIPDVLPPELVPPSRRDL 338
                 6789************988753899**************************************************96..8*************9887 PP

>> DUF1720  Domain of unknown function (DUF1720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  51.6   5.4e-07    0.0011       3      75 .]      11      77 ..       1      77 [. 0.89
   2 !    9.2  50.2   0.00078       1.5       4      61 ..      51     108 ..      50     121 .. 0.65
   3 !   11.1  30.3    0.0002      0.41      11      61 ..     121     188 ..     104     202 .. 0.57
   4 ?   -0.7  13.9      0.96   1.9e+03      18      42 ..     205     232 ..     186     241 .. 0.59
   5 ?   -3.9   0.0         9   1.8e+04      26      31 ..     263     268 ..     248     273 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.4e-07
     DUF1720  3 pqqtGfqppqqqqpqqqqplqpqpTGfmpqqqtgqglqpqpTG.ggqfapglqpqqTGfqeqaqqglqPqaTGf 75
                p qtGf+p+qq+qpq      pqpTGf +q ++g   qpqpTG +gq     q+qqTGf + +q+  qPq+TGf
  CDO71917.1 11 PMQTGFNPQQQFQPQLA----PQPTGFPGQRPPG-FQQPQPTGyPGQQGF-QQSQQTGF-PGQQGFQQPQQTGF 77
                78899999999987777....************9.9*******8887777.9*******.888888899****9 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00078
     DUF1720   4 qqtGfqppqqqqpqqq.qplqpqpTGfmpqqqtgqglqpqpTGggqfapglqpqqTGf....q 61 
                  q+Gfq+ qq++++ q +  qpq+TGf + q +    qpq+TG  + ++ lqpq+TGf    +
  CDO71917.1  51 GQQGFQQSQQTGFPGQqGFQQPQQTGFPGSQGF---QQPQQTG-FPGQQ-LQPQPTGFpgsnF 108
                 567888888888777756667888888886654...4888888.44444.8888888855431 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.0002
     DUF1720  11 pqqqqpqqq.qplqpqpTGfmpqqqtgq..........glqpqpTG.ggqfap.....glqpqqTGf....q 61 
                 + + q+qqq ++ + q+ Gf++ q+t+           +l +q+TG +    +     +l+pq+TGf     
  CDO71917.1 121 AIPSQFQQQqPQQNVQNSGFLSAQPTSNrflgtssglsPLSAQQTGfP----GgggmrPLMPQMTGFvdprL 188
                 333333333235566778888888877777777777777888888632....22223468888888855543 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.96
     DUF1720  18 qq...qplqpqpTGfmpqqqtgqglqpq 42 
                 +    +++q+q+ Gf  qq+++q  q+q
  CDO71917.1 205 NAagmPQFQQQQSGFSLQQSFQQHNQAQ 232
                 2244446666677777777666655555 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 9
     DUF1720  26 pTGfmp 31 
                 +TGf +
  CDO71917.1 263 NTGFIS 268
                 233333 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0036       7.3       2      19 ..     252     269 ..     251     276 .. 0.90
   2 !   12.5   0.0     4e-05      0.08       2      26 ..     286     310 ..     285     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
                 HHHHHHHHTTTSSSEEEH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdf 19 
                  ++iFr  D+ ++G+I+ 
  CDO71917.1 252 YDQIFRAWDTGNTGFISG 269
                 589*************96 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l +i++++D+ + Gk+++ Ef  ++
  CDO71917.1 286 LAKIWALADVENRGKLNLAEFHVAM 310
                 779******************9998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.4e-06     0.013       4      70 ..     252     310 ..     248     311 .. 0.84
   2 ?   -3.1   0.7       5.8   1.2e+04      24      54 ..     508     534 ..     492     549 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.4e-06
   EF-hand_7   4 lkeaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                   ++F++ Dt ++g+++ +  l+ ++         +s l++  l +++   D  + G++++ EF+ ++
  CDO71917.1 252 YDQIFRAWDTGNTGFISGQTaLE-VFG--------QSGLDRNDLAKIWALADVENRGKLNLAEFHVAM 310
                 5678****************444.554........45567889*********************9887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.8
   EF-hand_7  24 llrllrkifqga.gegsklsdeelellfkefD 54 
                 l +l r+i++   +     ++ e +++ +e D
  CDO71917.1 508 LPDLERRIKDREeR-----REREKREWARERD 534
                 33355555543221.....1122234554444 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00099         2       3      20 ..     253     270 ..     251     280 .. 0.85
   2 ?    3.9   0.0     0.032        63       3      26 ..     287     310 ..     285     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00099
   EF-hand_6   3 reaFklfDkdgdGkidae 20 
                 +++F+++D+ ++G+i+ +
  CDO71917.1 253 DQIFRAWDTGNTGFISGQ 270
                 689************976 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.032
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                  +++ l D+++ Gk++ +E+  a+
  CDO71917.1 287 AKIWALADVENRGKLNLAEFHVAM 310
                 5788999*************8776 PP

>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.13   2.7e+02      47      86 ..     161     201 ..     122     217 .. 0.74
   2 ?   10.3   0.6   0.00018      0.36      14      53 ..     221     266 ..     211     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.13
                    HTT-SS-HHHHHHHHHH..HHHS---HHHHHHHHHHHCTTT- CS
  FAD_binding_7  47 keGrTGfPlvDAamrqL..retGwmhnrlRmivasFltkdLl 86 
                    ++ +TGfP    +mr L  + tG++  rl m+  +Fl  +  
     CDO71917.1 161 SAQQTGFPG-GGGMRPLmpQMTGFVDPRLQMMSNTFLPANTS 201
                    556788886.578999944579**************977655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00018
                    HHHCSTTTTTSSTTGCCTT------HH.H......HHHHHTT-SS- CS
  FAD_binding_7  14 llaaepelaeralkekfdripweeseeek......leaWkeGrTGf 53 
                    l++++++ ++ +  ++  +ipw+ s++ek      ++aW +G+TGf
     CDO71917.1 221 LQQSFQQHNQAQRGNAAPKIPWALSKAEKkqydqiFRAWDTGNTGF 266
                    5556666667788889999***9965552356778**********9 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.3   4.4e-05     0.087     345     433 ..     427     518 ..     421     519 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.4e-05
                 THHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHSSS- CS
        EzrA 345 klrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrA...reqldeikkelkeikrkieks 433
                  l++++++l++  k+++++ ++ +++++   el+ e+ +l+ ++++++e++e++++  +s  kdE+r    re l+ + ++l +++r+i+++
  CDO71917.1 427 DLDDIKRQLENTAKMLDKVADENAQRTAEDDELEREMADLKYRVKRVQEDLEYVSRGPRSVAKDEERRkleRELLELMHEKLPDLERRIKDR 518
                 6789*************************************************************996333789999999*****9999976 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  16.7    0.0011       2.2      52     163 ..     426     534 ..     412     539 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0011
        Fez1  52 eeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqk 150
                 + +++++ +le+ ++ l+++ +e +++++e + l+ ++  l+  +k+++e+l+ +s+  ++ a++ +    ++ e+e le +++++  l++++k  +++
  CDO71917.1 426 ADLDDIKRQLENTAKMLDKVADENAQRTAEDDELEREMADLKYRVKRVQEDLEYVSRGPRSVAKDEE---RRKLERELLELMHEKLPDLERRIKDREER 521
                 5678999999999999*****9999999999999999*****************9877666533333...455556778999999999*****999999 PP

        Fez1 151 keeqassFeqERr 163
                 +e+++ ++++ER 
  CDO71917.1 522 REREKREWARERD 534
                 9999999999997 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.5    0.0067        13      32     138 ..     428     530 ..     424     551 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0067
  V_ATPase_I  32 cdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeesee 130
                 +d+++r+l+   + ++k +++++++    + ++++ e+e+ +l+ ++++++e+l+ +++  +++ k+ ++ + ++++le ++e l + e++ +++e+++
  CDO71917.1 428 LDDIKRQLENTAKMLDKVADENAQR----TAEDDELEREMADLKYRVKRVQEDLEYVSRGPRSVAKDEERRKLERELLELMHEKLPDLERRIKDREERR 522
                 6888888888888888855555554....4588888999999*************99999999999999999999999999988875533333322222 PP

  V_ATPase_I 131 eeeekeee 138
                 e+e++e +
  CDO71917.1 523 EREKREWA 530
                 22222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 3865.32
//
Query:       CDO71918.1  [L=1133]
Description: hypothetical protein BN946_scf184940.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-43  147.9   2.8    7.1e-43  147.0   2.8    1.5  1  RhoGEF    RhoGEF domain
    3.3e-24   84.5   1.2    7.4e-12   44.9   0.2    2.7  2  SH3_9     Variant SH3 domain
    8.4e-24   82.9   0.4    6.2e-13   48.1   0.1    2.5  2  SH3_1     SH3 domain
    1.8e-16   60.4   0.0    3.5e-14   52.9   0.0    2.8  1  PH_13     Pleckstrin homology domain
    6.4e-13   48.2   0.0    1.4e-05   24.7   0.0    2.5  2  SH3_2     Variant SH3 domain
    3.6e-10   39.3   0.7    6.9e-10   38.4   0.7    1.5  1  WH2       WH2 motif
    4.5e-08   33.6   0.0      1e-07   32.4   0.0    1.7  1  PH        PH domain
  ------ inclusion threshold ------
      0.088   12.7   0.0       0.61    9.9   0.0    2.1  1  PH_16     PH domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   2.8   3.2e-46   7.1e-43       2     182 .]     812     986 ..     811     986 .. 0.95

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 3.2e-46
                 HHHHHHHHHHHHHHHHHHHHHTH.CCCHHCTCCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHCHHH CS
      RhoGEF   2 ikElleTErsYvrdLkvlvevyl.kplselevlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYseYcsnypn 99 
                 i El+ TE +YvrdL+++ve+++ +  +   +l+e+ +  iF n+e+il ++ + +l++Leer+  +e++   ++igd++++++++++ Y +Yc n+ +
  CDO71918.1 812 IYELIVTEGAYVRDLQLIVEHFYaNVYN---LLDEKARTVIFANVEDILLMN-TTFLSSLEERQ--KECRLYVDKIGDILNTNMAHLNIYMDYCVNQGS 904
                 89******************99944333...688999999************.999999*****..5899999************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF 100 alkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                 a+k+l++l+++n++++a+l++++ +p +++ldL+s+L++P+qR++rYpLL+k+++ +t+++ +d+ ++++a e+ ++v+++iN
  CDO71918.1 905 AIKVLQSLRQSNPELAACLQRLRDDPAARNLDLSSYLLVPMQRITRYPLLFKQIIHYTEPD-DDRTQIERAREMAEKVLNHIN 986
                 **********************************************************998.5899****************9 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   5.4e-13   1.2e-09       2      49 .]     421     471 ..     420     471 .. 0.94
   2 !   44.9   0.2   3.3e-15   7.4e-12       1      49 []     480     528 ..     480     528 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.4e-13
       SH3_9   2 lypyepreddeLsLqrGDvitvi.eesedgWlegsl..tGrtGlvPanyve 49 
                 ly+y+++ ++eL + ++ +it   ++s ++W++g+l  +G+tG++P++yve
  CDO71918.1 421 LYAYQAQRPEELTFGENLIITAHpSKSGSDWWYGTLvrDGKTGFFPKTYVE 471
                 7**********************77799*******666************7 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 3.3e-15
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 Aly+y+  ++deL++++GD +t+ ++s+ +W+ ++++G  + vPa+y+e
  CDO71918.1 480 ALYDYNGNNADELPFSEGDQLTIVDRSDADWWKAEQGGVVFIVPAAYLE 528
                 8**********************************************97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.7e-11   3.9e-08       3      48 .]     421     467 ..     419     467 .. 0.91
   2 !   48.1   0.1   2.7e-16   6.2e-13       2      38 ..     480     516 ..     479     524 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.7e-11
                 SSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 lY Y+a++++EL+f ++ +i+ +  + + +Ww g l ++gk+G++P+
  CDO71918.1 421 LYAYQAQRPEELTFGENLIITAHPSKSGsDWWYGTLVRDGKTGFFPK 467
                 9*************999999999766667*****************5 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 2.7e-16
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEET CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlk 38 
                 AlYDY+++++dEL+f +GD+++++++s+++Wwk++  
  CDO71918.1 480 ALYDYNGNNADELPFSEGDQLTIVDRSDADWWKAEQG 516
                 9*********************************976 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.6e-17   3.5e-14      15     146 ..    1017    1130 ..    1009    1133 .] 0.84

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.6e-17
                  B-SSSSB--EEEEEEEEETTT--EEEEEEESSEEEEEEEE----.-------S-SS--EEEEE-SS-EETTSEEEE--SSS-.----EEEE..EESS CS
       PH_13   15 ltNclgpRkllhsGklyKaksnKElvgFLfNDFlLltqpvkklsvssaqeklfesksnaqfklYkkpiflnevlvkkpsdksdssekvlkl..sdid 109 
                   t  +gpRkll  G l+Kaks++ l +FL  D l+lt+ +              sk      lY+ p+ l+ev+v++p+ k+d+ +  l +      
  CDO71918.1 1017 PTRYMGPRKLLREGVLMKAKSGRKLRAFLCSDILVLTEES--------------SK-----SLYRMPLSLSEVQVHEPTGKDDT-TFQLAVayPRGG 1093
                  5889*********************************986..............22.....49**************9888733.333333123445 PP

                  EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTXXXX CS
       PH_13  110 kvitlkaesanersaWvkkikeAsekyietekkkrek 146 
                    itl+a+sa e+++W+  i++A+++  e +++  +k
  CDO71918.1 1094 DSITLRAASARECQTWMYAIHSAAKRCREAQRRAARK 1130
                  78**************************999988766 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.7e-08    0.0002       8      55 ..     424     471 ..     417     473 .. 0.90
   2 !   24.7   0.0   6.2e-09   1.4e-05       4      56 ..     480     529 ..     478     530 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8.7e-08
                 B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEE CS
       SH3_2   8 yvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslve 55 
                 y ++ ++eL+f ++ +i +   +sk+  +ww+g+   +G+ G+fP ++ve
  CDO71918.1 424 YQAQRPEELTFGENLIITAH--PSKSGSDWWYGTLvrDGKTGFFPKTYVE 471
                 88999***************..999999*****88899***********8 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 6.2e-09
                 ESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   4 aiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                 a+ dy+g++ +eL f +Gd + ++   ++++ +ww++e gG+v ++P  ++e+
  CDO71918.1 480 ALYDYNGNNADELPFSEGDQLTIV---DRSDADWWKAEQGGVVFIVPAAYLEV 529
                 5669********************...99999***********9999999886 PP

>> WH2  WH2 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.7   3.1e-13   6.9e-10       1      30 []     272     298 ..     272     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.1e-13
                 X-TCCHHHHHHHHHH..HTTBSS--XEEXX CS
         WH2   1 ggggRgALLadIraGskaqLKKveetndrs 30 
                 ++g+R+ALL +I+aG k  L+K+ +tndrs
  CDO71918.1 272 PTGDRSALLNAIQAGRK--LRKA-QTNDRS 298
                 79*************99..****.*****8 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   4.5e-11     1e-07       2     104 ..    1027    1117 ..    1026    1118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.5e-11
                  EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHH CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWik 98  
                   +eG L+k +sg+k   +   ++L ++ l++ +++   +++ +++ +sls+++v e+    ++k + +f+l ++  +g ++++l+a+s+ e+++W++
  CDO71918.1 1027 LREGVLMKAKSGRK--LR---AFLCSDILVLTEES---SKSLYRMPLSLSEVQVHEP----TGKDDTTFQLAVAYPRGGDSITLRAASARECQTWMY 1111
                  58999999999873..44...66776999999999...9999************976....9*********88888888****************** PP

                  HHHHHH CS
          PH   99 aiqsai 104 
                  ai+sa 
  CDO71918.1 1112 AIHSAA 1117
                  ***986 PP

>> PH_16  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00027      0.61      15     124 ..    1024    1117 ..    1012    1118 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00027
       PH_16   15 rkLiheGpltwrlakgklvdlhvvlledvlvllqkqdeklvlkslataskdkkvlspiikLskllvrevAad.kkalflistsesgpqmyelvastk 110 
                  rkL+ eG l+  ++     +l++ l +d+lvl +++ + l                  ++Ls++ v e   + +  + l  + ++g +   l a+++
  CDO71918.1 1024 RKLLREGVLMKAKSG---RKLRAFLCSDILVLTEESSKSLYR--------------MPLSLSEVQVHEPTGKdDTTFQLAVAYPRGGDSITLRAASA 1103
                  677777766544433...345567777777766555444332..............3378999999997765267777999999999999******* PP

       PH_16  111 eerktWlkliseav 124 
                   e++tW+ +i++a+
  CDO71918.1 1104 RECQTWMYAIHSAA 1117
                  *******9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1509  (0.0841653); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.50
# Mc/sec: 6795.53
//
Query:       CDO71919.1  [L=211]
Description: hypothetical protein BN946_scf184940.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-46  154.8   1.3    1.3e-45  154.2   1.3    1.3  1  OPA3            Optic atrophy 3 protein (OPA3)
     0.0092   15.4   0.5      0.014   14.8   0.1    1.4  2  FliD_C          Flagellar hook-associated protein 2 C-terminu
  ------ inclusion threshold ------
      0.021   15.0   0.3       0.04   14.1   0.3    1.4  1  COG5            Golgi transport complex subunit 5
      0.038   13.8   0.3       0.12   12.3   0.3    1.8  1  Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain o
      0.038   14.1   0.6       0.11   12.7   0.6    1.8  1  HR1             Hr1 repeat
      0.053   14.1   0.3      0.098   13.2   0.3    1.4  1  Acyl-CoA_ox_N   Acyl-coenzyme A oxidase N-terminal
        0.3   11.6   2.2        2.4    8.7   0.7    2.1  2  GLTSCR1         Conserved region of unknown function on GLTSC


Domain annotation for each model (and alignments):
>> OPA3  Optic atrophy 3 protein (OPA3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   1.3   5.2e-49   1.3e-45       2     124 ..       2     122 ..       1     123 [. 0.97

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 5.2e-49
        OPA3   2 pllKLaslavRtlsKPianrikaqakehprfrkvcirlaqalhrlemrlrlrllgdekaarkirpLseekAvelGAellgEafifsvagglilyEywrs 100
                 + +K+a l++Rtl+KPi+n+ik qak+h++fr++c+ laq+++++e+rlr++llg+ +a +++rpLse++A+e+GA+ l+E f+f+va++lil+E+wrs
  CDO71919.1   2 ASAKIAQLLIRTLAKPISNQIKVQAKQHEKFRSFCVGLAQRMYQTEVRLRTNLLGE-PA-KHVRPLSETRAIENGANALAEGFLFAVAASLILAETWRS 98 
                 579*****************************************************.66.8************************************** PP

        OPA3 101 srkeakkeeevkeeleeleeriee 124
                 sr+++k++++v++ le+l++++ee
  CDO71919.1  99 SRNQTKRRDAVDDALESLQTKVEE 122
                 *********************998 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   3.3e+03     194     223 ..      13      42 ..       6      53 .. 0.58
   2 !   14.8   0.1   5.6e-06     0.014     180     235 ..      91     143 ..      70     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
                 HHHHHXXXXHHHHHHHHHHHHHCHHHHHHH CS
      FliD_C 194 tasknltkqikdldkkiedldkrletleer 223
                 t+ k + +qik  +k+ e++ +    l +r
  CDO71919.1  13 TLAKPISNQIKVQAKQHEKFRSFCVGLAQR 42 
                 455556666666666666665554444444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.6e-06
                 HHHHHHSTT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
      FliD_C 180 llksyvkssngtlqtasknltkqikdldkkiedldkrletleerlkkqfaalekav 235
                 +l ++ +ss  + +++ + +++ +++l++k+e+++kr++tl  +++++ a  e+a+
  CDO71919.1  91 ILAETWRSS-RNQTKRRDAVDDALESLQTKVEEVNKRIDTLSMQYEERLA--EEAM 143
                 567777888.8888999******************************998..6666 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   1.6e-05      0.04      20      76 ..      98     154 ..      82     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  20 atnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlse 76 
                 +  n+++    ++ +l+ l+  ++e++kr+++l  + ++ L e++ ++ +l  +l+ 
  CDO71919.1  98 SSRNQTKRRDAVDDALESLQTKVEEVNKRIDTLSMQYEERLAEEAMRHDELARILQR 154
                 567888888899999**********************************99999886 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   4.6e-05      0.12      17      41 ..     106     130 ..     101     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.6e-05
                     HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil  17 QtkVeseiqaLtqkLeavtkRleal 41 
                     +++V++++++L++k e+v kR+ +l
      CDO71919.1 106 RDAVDDALESLQTKVEEVNKRIDTL 130
                     789*******************988 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   4.2e-05      0.11      27      63 ..      83     139 ..      65     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
         HR1  27 e...............sk.ktqnkk....vrqeaeselsesnskielLreqLeelqa 63 
                                 s+ +t+ ++    +++  +++ +e n++i+ L +q ee+ a
  CDO71919.1  83 LfavaaslilaetwrsSRnQTKRRDavddALESLQTKVEEVNKRIDTLSMQYEERLA 139
                 344555555556666555455555588889*********************999877 PP

>> Acyl-CoA_ox_N  Acyl-coenzyme A oxidase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   3.8e-05     0.098       5      63 ..      92     154 ..      88     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
                    HHHHHHTSHHHHHHHH....HHHHHHCT-GGGS-SSTGGGS-HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_ox_N   5 ltvllaggeeklerrr....elesllesdpefddaedyyflsreeryeealrkatrllkklre 63 
                    l++ +  ++ +++rr     +lesl  +  e+++  d  ++ +eer  e + +  +l++ l++
     CDO71919.1  92 LAETWRSSRNQTKRRDavddALESLQTKVEEVNKRIDTLSMQYEERLAEEAMRHDELARILQR 154
                    899*************55545555555788******************999999988888775 PP

>> GLTSCR1  Conserved region of unknown function on GLTSCR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.097   2.5e+02      42      69 ..      27      54 ..      11      77 .. 0.59
   2 ?    8.7   0.7   0.00092       2.4      42      82 ..     111     149 ..      97     159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.097
     GLTSCR1 42 kadeefekvaeellkrfqklenkfrkll 69
                k+ e+f +++  l +r+ + e + r+ l
  CDO71919.1 27 KQHEKFRSFCVGLAQRMYQTEVRLRTNL 54
                3355566666666666666665555544 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00092
     GLTSCR1  42 kadeefekvaeellkrfqklenkfrklllkeakrespseee 82 
                 +a e++++++ee+ kr++ l  ++++ l +ea+r+ +   +
  CDO71919.1 111 DALESLQTKVEEVNKRIDTLSMQYEERLAEEAMRHDE--LA 149
                 3457889999***********************6544..34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1704  (0.0950416); expected 358.6 (0.02)
Passed bias filter:                     1166  (0.0650343); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1520.50
//
Query:       CDO71920.1  [L=397]
Description: hypothetical protein BN946_scf184940.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-34  119.4   0.0      5e-16   59.1   0.0    2.1  2  IPK             Inositol polyphosphate kinase
  ------ inclusion threshold ------
      0.076   13.4   2.5       0.16   12.4   2.5    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        4.2    6.6   5.2        6.4    6.0   5.2    1.2  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   8.4e-20     5e-16       2      59 ..     109     166 ..     108     176 .. 0.95
   2 !   58.3   0.0   1.5e-19   8.9e-16     104     196 ..     269     378 ..     261     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 8.4e-20
                 EEEE-TTTT-SSEEEEEEEESSSSS-TTSTCHHHHHHHHHHCCSTHHHHSEEEEEEEE CS
         IPK   2 lvLedltagfkkPcvlDvKlGtrtydedaseekrekqqkkskettseslGfrilGmkv 59 
                  +Le+l ++f kP++lD+KlGt ++d+das ekr++++k ++etts + G+r+ G++v
  CDO71920.1 109 FLLENLSHSFLKPNILDIKLGTVLHDDDASDEKRARMEKTARETTSLETGVRLTGFQV 166
                 57******************************************************99 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 1.5e-19
                 HHCHHHHHHHHHHHHHCSHSEEESSEEEEEEEETT...........................................SSEEEEEE--TTEEE--TSS- CS
         IPK 104 askllerLqelkqvlesqeslrfyssSLLfvyegdseaseka.....................eekeaeeeeeeeskekkvevklIDFAhvvptesggp 181
                 +++l e + e++++l++ e  r++++SLL+vye+d    e+a                     +e+e+++ee +++  + + vklIDFAh++ ++++gp
  CDO71920.1 269 LETLREDVAEIREALAEAEL-RMVGASLLVVYEADW---ERAraglqwledgadddededkeaDEEEDSDEEGKKRVGPPYIVKLIDFAHTKLVPGSGP 363
                 56788999**********99.**************4...444556*************998877777777788888889999***************** PP

                 -HHHHHHHHHHHHHH CS
         IPK 182 DegyllGlksLikil 196
                 Deg+l+Gl++ +++l
  CDO71920.1 364 DEGVLKGLDTVLRLL 378
                 *********999876 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.5   2.7e-05      0.16       4      29 ..     311     336 ..     308     361 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
  CENP-B_dimeris   4 qlleagedsesesdeeeeeeeedeed 29 
                     q+le g d + + d+e +eee+ +e+
      CDO71920.1 311 QWLEDGADDDEDEDKEADEEEDSDEE 336
                     55666655555555554444444433 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.2    0.0011       6.4     270     293 ..     313     336 ..     292     341 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0011
       NOA36 270 ddegdedddddddeedddeeedde 293
                  ++g++dd+d+d+e d++e+ d+e
  CDO71920.1 313 LEDGADDDEDEDKEADEEEDSDEE 336
                 444444444444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2673.35
//
Query:       CDO71921.1  [L=146]
Description: hypothetical protein BN946_scf184940.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1033.86
//
Query:       CDO71922.1  [L=904]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-07   32.4   0.1    1.8e-06   28.4   0.0    2.4  2  Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal doma
    2.6e-07   30.4   0.0     0.0012   18.3   0.0    2.5  2  Cellulase        Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0     2e-10   1.8e-06       1      51 [.     697     766 ..     697     771 .. 0.79
   2 ?    1.2   0.0      0.06   5.4e+02      53      73 ..     828     846 ..     822     862 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2e-10
  Glyco_hydro_5_C   1 RPyPakvaGtplsfsfdlktgeftlewt..........adkssaeds................eTeIflPelhypkg 51 
                      RP+P++v G+p +++fd+++ e++l+++          +                        +Te ++P +hy ++
       CDO71922.1 697 RPFPRAVVGVPADIQFDIAKAEYKLTVRvrpedapraeK-------MelapppersdpdeaelPTELYVPLIHYASD 766
                      9***************************87655444440.......25566666666677888***********754 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.06
  Glyco_hydro_5_C  53 kvevsggkweydeerqtlyvv 73 
                      +v+vs g+w++  e qtl   
       CDO71922.1 828 DVKVSAGRWTV--EGQTLKWW 846
                      79********9..66665543 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-07    0.0012      27      86 ..     105     174 ..      84     294 .. 0.83
   2 !    9.3   0.0   7.5e-05      0.67     148     279 ..     422     591 ..     411     593 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-07
                 HHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS...........T CS
   Cellulase  27 idevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse...........e 86 
                 ++ ++ +g+n++R  v+w+ l +++p  k+d + ++    v+  +ke g+++  d+H++           +
  CDO71922.1 105 LARLRGWGYNALRYVVTWEALEHAGPR-KYDYDFMDYTVRVLRKCKEFGFRIYMDPHQDiwsrfsggsgaP 174
                 567889************988877777.6*****************************8555555554443 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSGSSSSTTEEEEEEEETTTHHHTGCGS........................HSCTHHHHHH CS
   Cellulase 148 vkayaeeaikaIRavgpnrliivegnswsgnldgavlndPndsqdnliysvHfYgpsdfaqtefg........................kdltdktnla 222
                 ++++  +++k IR+++p+ +++v  + ++  ++  + +     + +   s H+Y++     ++ +                        +   +k+  +
  CDO71922.1 422 WRSHWYAFVKRIRQSHPEAILFVAPPVFAPPPEI-GEDV---LKGRCCLSTHYYDGLTLVTRHWNwfnadalglirgkysspmqavkigESAIRKSLQE 516
                 7777778999999999999999999777776666.4443...579**********9999888877899******************9954444555544 PP

                 HHHHHHHHHHHHTTSEEEEEEEESS.TTSSH............HHHHHHHHH....HHHH.HHTTTEEEEEEESS CS
   Cellulase 223 qrledaakylvekgipviigEfGgs.nadgd............lakeeaekw....ldyl.kekgiswiyWslnp 279
                 q  + +a+     ++p iigE G   ++dg+             +  +++k     l+++   + +s+++W++ p
  CDO71922.1 517 QLGYLKADATILGDYPTIIGEIGIPyDMDGKaaygytdggkhkGDFSQQQKAldasLNAAdGPNALSYTIWNYCP 591
                 444555555577789********9877777677766666555522233333334345555344577888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 6794.82
//
Query:       CDO71923.1  [L=439]
Description: hypothetical protein BN946_scf184940.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3294.25
//
Query:       CDO71924.1  [L=479]
Description: hypothetical protein BN946_scf184940.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-59  201.9   0.0    3.8e-59  200.6   0.0    1.5  1  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.05   13.8   0.1        3.3    7.9   0.1    2.6  2  Apo-CII   Apolipoprotein C-II
      0.062   13.3   0.2       0.15   12.0   0.1    1.5  1  DUF655    Protein of unknown function (DUF655)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.6   0.0   6.4e-63   3.8e-59      48     440 ..       8     447 ..       3     455 .. 0.88

  Alignments for each domain:
  == domain 1  score: 200.6 bits;  conditional E-value: 6.4e-63
                 EEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.EEETHHH CS
        p450  48 vlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess.elditel 144
                 + ++p a +++++k++ +++ +  +a+++++    +g g+l + g++++++R++l+p +  +  l +++++++ ++++l++++ ++++    e+d+  +
  CDO71924.1   8 YTYDPRALHSIYVKEQ-DIYEE-SPAVISSFL-LLLGPGLLATLGDQHRRQRKMLNPVFAAK-HLrEMMPIFTGVIHKLHDAIASRVNGDPqEVDVLSW 102
                 5689999********6.88886.778888766.99***************************.888*****************999877666******* PP

                 HHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC........ CS
        p450 145 lskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlldklieerretldsa........ 234
                 + +aal+ ig+  +g++f+ l ++++ ++ + v++++s  ++ +v + +l p ++++ p +++rk+ e+   l   + + ++e  + l+ +        
  CDO71924.1 103 MGRAALELIGQAGLGHSFEPLVEDSADQFANSVKAYFSAAANINVAIRQLLPiVIRIGPRSFRRKVVEM---LPHAAAQRMREISDALEAQsirlvndk 198
                 ****************************************************99999999999999877...55566666666666676667779**** PP

                 ...................SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT.. CS
        p450 235 ...................kksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr.. 311
                                    ++sr ++ + l+ a  ++ +++  l+d+el a+v +l +a++dTt+++l+ +L++La  P+vq+klreEi+++  d    
  CDO71924.1 199 kaafaqgdealthqvgeerHDSRDNLPARLVRANmNAASQD-RLTDAELIAQVSTLVVAAMDTTANALARTLHQLALCPDVQQKLREEIMRARDDGMgk 296
                 *****************964444455555555556666665.9*************************************************9776667 PP

                 ..T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET......T........EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS CS
        p450 312 ..eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir......g........ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg 393
                    ++yd+l++lpyldav++EtLR hp+v   l R vtkd v++      g        + ++kGt++++ l+a++ ++e++ +++ e +peR+l+   
  CDO71924.1 297 lrDLEYDELMELPYLDAVCRETLRRHPPVS-ALVRLVTKDAVLPlyapirGvdgswihsVPVKKGTRILTDLQACNCNKELWgEDAYEWRPERWLEPLP 394
                 88****************************.999*****999653333333444777678899********************************9866 PP

                 ......CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 394 ......nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                          + +   + F  G R+CiG ++ ++e+k++la l+  F+++l ++
  CDO71924.1 395 raleeaHIPGVYSHLMTFIGGNRSCIGFKFSQLEMKMVLAMLIPAFQFDLSDK 447
                 78888856689999**********************************98554 PP

>> Apo-CII  Apolipoprotein C-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.022   1.3e+02      36      66 ..      10      40 ..       3      49 .. 0.77
   2 ?    7.9   0.1   0.00055       3.3       3      50 ..     236     284 ..     234     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.022
     Apo-CII 36 YkktylptvdekirdmYskstaAvstYagil 66
                Y   +l ++  k +d+Y +s a +s ++ +l
  CDO71924.1 10 YDPRALHSIYVKEQDIYEESPAVISSFLLLL 40
                445689999999************9987666 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00055
     Apo-CII   3 pqqdeaaspalltkvqesllsYWd.sAkaaAqdLYkktylptvdekird 50 
                 + qd  + + l+++v   +++  d +A a A+ L++ +  p v++k+r+
  CDO71924.1 236 ASQDRLTDAELIAQVSTLVVAAMDtTANALARTLHQLALCPDVQQKLRE 284
                 5789999999*****998887776268999*****************97 PP

>> DUF655  Protein of unknown function (DUF655)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.5e-05      0.15      57     137 ..     212     291 ..     172     295 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
                 E-SSS--SSEEEEEEE--GGGS-HHHHHHHHHHHHHHHHTTHHHHHHHH-.----B-SSSBGGGGSTT--HHHHHHHHHHHH CS
      DUF655  57 aigkgksdkivkikreisyedLtdvaraeLpdvvekivkekEdrfveffn.eaepitiRlHaLelLpgvgkklarkileeRe 137
                 ++g++ +d  +++++++   ++ +++++ L d+  +++ +     v   +  a++++  lH+L l p+v +kl+++i+++R+
  CDO71924.1 212 QVGEERHDSRDNLPARLVRANMNAASQDRLTDA--ELIAQVSTLVVAAMDtTANALARTLHQLALCPDVQQKLREEIMRARD 291
                 556666666667777888888888888888885..777777777776654268999999********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3350.80
//
Query:       CDO71925.1  [L=419]
Description: hypothetical protein BN946_scf184940.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-47  161.4   0.0    2.7e-36  125.3   0.0    2.4  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.0   1.5e-40   2.7e-36      47     328 ..       7     310 ..       3     312 .. 0.84
   2 !   34.4   0.1   5.9e-13   1.1e-08     370     438 ..     310     385 ..     308     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 1.5e-40
                 EEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS.EEETHH CS
        p450  47 vvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess.eldite 143
                 ++ ++p a +++++k++ +++ +  ++l++ s+  f+g g+l + g +++++R++l+p +  +  l ++++++++++++l++++ +++++ + eld++ 
  CDO71925.1   7 IFTYDPRALHSIFVKDQ-DVYEE-GPVLIS-SALLFLGPGLLATLGGQHRRQRKMLNPVFSAK-HLrEMMPIFTDIIHNLHDAIASRVEAGTqELDVVG 101
                 567899**********5.88886.445555.577*****************************.888***********************999****** PP

                 HHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC........ CS
        p450 144 llskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa........ 234
                 ++ +aal+ ig+  +g++fd l ++ + e+ +av++++s++s   v + +l p++  + ++ +r+   + + ++ +++++ie   +   ++        
  CDO71925.1 102 WMGRAALELIGQGGLGHSFDPLIEDYPDEFGNAVKAYFSVVSEMGVFVRMLLPFVTHIGSSSFRRKI-VKMLPFAVAQRMIEISDALAAQStklvndkr 199
                 *********************9999999***********9977655555555543333333333333.3345566666555555554444477777778 PP

                 .............SCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT....T-HH CS
        p450 235 .............kksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr....epty 315
                                + +d +++ll a  ++ +++  l+deel+ +v +l +a++dTts++l+ ++++La +P+vq++lreEi ++  d       ++y
  CDO71925.1 200 aalaqgdealkhqVGEGKDIMSILLRANmNAASED-RLTDEELVGQVSTLVVAAMDTTSNALARIFHQLALYPHVQQRLREEIVHARDDGMgnlrDLDY 297
                 888888****99966799********998777777.9*************************************************977767788**** PP

                 HHCCT-HHHHHHH CS
        p450 316 ddlqklpyldavi 328
                 ddl++lpylda++
  CDO71925.1 298 DDLMELPYLDAAC 310
                 **********986 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 5.9e-13
                 HHT-TTTS.SSTTS--GGGGB-TTS......CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 370 lhrdpevf.pnPeeFdpeRFldekg......nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                 ++ ++e++ +++ e +peR+l+            + +   + F  G R+CiG ++ ++e+k++latl+  F+++l 
  CDO71925.1 310 CNCNKELWgEDAYEWRPERWLEPLPraledaHIPGVYSHLMTFIGGGRACIGFKFSQLEMKMVLATLIPAFQFDLS 385
                 66799****************996688998856689999**********************************973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2845.24
//
Query:       CDO71926.1  [L=299]
Description: hypothetical protein BN946_scf184940.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-07   29.7   0.0    8.8e-06   25.6   0.0    2.2  1  Lipase_3       Lipase (class 3)
  ------ inclusion threshold ------
      0.022   15.4   0.0      0.027   15.1   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
       0.18   11.7   0.0       0.28   11.1   0.0    1.2  1  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-09   8.8e-06      43      85 ..     114     157 ..      83     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.5e-09
                 HHS-HHHHHHHHHHH.HHHHTT-EEEEEEEETHHHHHHHHHHHH CS
    Lipase_3  43 yeeslreqvlkelkr.llekypeysivvtGHSLGgalAlLaald 85 
                 +e sl +++  +l + l   yp+ +i++ GHSLGgal++L+++ 
  CDO71926.1 114 AEDSLFYSIGVNLYNnLTYMYPDSNIWLIGHSLGGALSSLVGVT 157
                 44677788888887769999********************9875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.6e-06     0.027      65      96 ..     137     175 ..      90     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.6e-06
                    TSEEEEEETCHHHHHHHHHHCC..EE...EEES-........ CS
  Abhydrolase_6  65 gpvvlvGHSlGGalalaaaplalvvg...vlldp.......p 96 
                     +++l+GHSlGGal+++   + + +g   v+ ++       +
     CDO71926.1 137 SNIWLIGHSLGGALSSL---VGVTFGvpvVAFEApaerlaaT 175
                    4679*************...7755554445555522222220 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.7e-05      0.28      57      90 ..     135     169 ..     124     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
     UPF0227  57 gddnillvGssLGGyyatrlgerfglrqvll.nPa 90 
                  d ni l+G sLGG ++  +g  fg+  v + +Pa
  CDO71926.1 135 PDSNIWLIGHSLGGALSSLVGVTFGVPVVAFeAPA 169
                 46679*********************999883455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2070.65
//
Query:       CDO71927.1  [L=546]
Description: hypothetical protein BN946_scf184940.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.8e-147  490.1   8.4   9.8e-147  489.8   8.4    1.0  1  Rft-1            Rft protein
    2.1e-11   43.6   7.2    2.1e-11   43.6   7.2    2.4  2  Polysacc_synt_3  Polysaccharide biosynthesis protein
    1.8e-07   30.8   8.5    1.8e-07   30.8   8.5    2.6  2  Polysacc_synt    Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Rft-1  Rft protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.8   8.4  1.6e-150  9.8e-147       5     509 ..      16     539 ..      12     540 .. 0.92

  Alignments for each domain:
  == domain 1  score: 489.8 bits;  conditional E-value: 1.6e-150
       Rft-1   5 gatflillQlisrlitFllNqllvrflsprilG.itvrLelllstiLFlSREairlavlriksk....kkkseslqkvvnlalipvligivlsivlilw 98 
                 + ++l+llQl+sr++tF+lNq+lvr +sp+++G  ++++elllstiLFlSRE++r+a+lr++ +      ++ ++q ++n++l+pvl+gi+ +++ ++ 
  CDO71927.1  16 SGSSLVLLQLFSRVVTFILNQALVRLVSPQVFGtTSIQFELLLSTILFLSREGVRNALLRAPPStksaPDRQITSQLITNISLLPVLLGIPTAMLSAIV 114
                 56889*******************************************************998877766788899************************ PP

       Rft-1  99 qyslsneellqlpyfklsvllvalsiiiellseplyvvaqaelnvklrskleslavlvrclvtfaiivlfekeakegiailaFalgqlaysltllllyy 197
                 + s+s++++ + p+f++sv l++l++++ellseply+ +q+el++++r+++e++av+++++vtf+++v++++e+    a++aFalgq ay+lt+l++++
  CDO71927.1 115 YLSSSSSTTASQPHFRTSVTLYVLAAFFELLSEPLYIRTQNELRFHVRVRAEGTAVMLKTVVTFVALVCASEEW----ALVAFALGQTAYGLTMLASFM 209
                 *9***********************************************************************9....8******************** PP

       Rft-1 198 vdflknlkkkkkfslkltkik..lkeekksyyfdkdllelfkkvffqlilKhlLteGdkliisllctveeQGiYalvsnyGSLvaRlvfaPiEEslrlf 294
                 ++   +l      ++++++++  ++  +ks++f+++l++l+  ++ q+++Kh+LteGdk+++s l+++++QG Ya+++nyGSL+aR+vf+PiEE+ r+f
  CDO71927.1 210 MACRGTL------DFRPKRVSftTEGGTKSLLFEPELFSLSVVMTGQSLIKHFLTEGDKFLVSRLSPLADQGGYAVAANYGSLIARIVFQPIEETARVF 302
                 *995544......4555555543667889999******************************************************************* PP

       Rft-1 295 fakll...........sskkskknlkesvevLlnllklylylsllivifGpsyssflLqlliGskwsstsvldllrvYclyipllalNGilEaFvqsva 382
                 f+k+l           +  +sk++l+++ +vLl+ll ++++l ll+++fGp+y ++ ++l++ +k+ +ts++++l+vY++yip++a+NG+lEaF++s+a
  CDO71927.1 303 FSKTLsstasepeekkTAVRSKDALQTAATVLLTLLLTFTHLLLLAITFGPPYLPLAISLVLPRKYLATSAPSILHVYVYYIPMMAFNGVLEAFFASAA 401
                 *****877777766554559******************************************************************************* PP

       Rft-1 383 ssaqllkqsylmvvfSvvfllasyllievlklgaeGlilaNivNmllRiiyslrfikkfykklkle..kslrellpsalvvalllvsliigyv...... 473
                 s+a+l+ qs++m+vfS++f++a++ l + l lg +Gl++aN+ N++lR  y++ f++++++++ +    ++++++p   ++a+++v++ i         
  CDO71927.1 402 SPADLRAQSRWMLVFSGAFIAAAVGLARGLGLGDAGLVWANVANLALRAGYAWAFVRRYFHEQGAGglIDWSQVTPPLPALAVFAVAAAIVRGsaasyk 500
                 **************************************************************9998887777777766666665443332222458899 PP

       Rft-1 474 ...velsknllqlligillalllllaillkerellkell 509
                    ++l  +  +l++gi+++l +ll++++ er+++ +l+
  CDO71927.1 501 dvpFNLIAQKGHLATGIACLLGCLLTCIVLERKTVVQLV 539
                 9998889999************************99875 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   7.2   3.4e-15   2.1e-11       2     289 ..      38     356 ..      37     360 .. 0.76
   2 ?   -1.8   0.6      0.24   1.4e+03     122     161 ..     417     457 ..     374     461 .. 0.72

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 3.4e-15
  Polysacc_synt_3   2 LARLLspedFGvvaial.vvislanlfvdmGlssaliqkedltee.........dlstvftfnlvlgl..lialvlfllapliasfynqpelvt 83 
                      L RL+sp+ FG  +i + +++s +  +++ G+ +al++   +t++          ++ +  + ++lg+  ++  ++++l+ + +    qp+  t
       CDO71927.1  38 LVRLVSPQVFGTTSIQFeLLLSTILFLSREGVRNALLRAPPSTKSapdrqitsqLITNISLLPVLLGIptAMLSAIVYLSSSSSTTASQPHFRT 131
                      89*************88467888899999*********9866665355533333344444444555651134456778888888899******* PP

  Polysacc_synt_3  84 vlrvlalvlilsglssvqeallrrelkFkklfkitlvssvvgvivaivlAllglgvwALvigtllssllslvllw...las....kwrp.rlkf 169
                       +++  l  +++ ls     + + el+F   ++++ +++++ ++v++v+ ++    wALv   l + ++ l +l    +a+    ++rp r++f
       CDO71927.1 132 SVTLYVLAAFFELLSEPLYIRTQNELRFHVRVRAEGTAVMLKTVVTFVALVCASEEWALVAFALGQTAYGLTMLAsfmMACrgtlDFRPkRVSF 225
                      ************************************************99999999*9999888777665555441004331111444423344 PP

  Polysacc_synt_3 170 slkslk.......elfsfglklllsnllnylarnldnlliGkvlssaaLGlYsvakrlaslpvaeitsvia...kVlfP.alSrlqddkkklre 252
                       ++  +       elfs ++ +++++l++ + ++ d++l+ ++   a+ G Y+va ++ sl+  ++ ++i+   +V+f+ +lS+  +++++ ++
       CDO71927.1 226 TTEGGTksllfepELFSLSVVMTGQSLIKHFLTEGDKFLVSRLSPLADQGGYAVAANYGSLIARIVFQPIEetaRVFFSkTLSSTASEPEEKKT 319
                      433221233344479**************************************************99999622267777568888888888888 PP

  Polysacc_synt_3 253 lylkvlrlialivlPiavglavvaellvkvllGsqWl 289
                      +++   +l +  ++ +  +l ++  ll+ +++G  +l
       CDO71927.1 320 AVRSKDALQTAATVLLTLLLTFTHLLLLAITFGPPYL 356
                      8877777766666667777777777777777776665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.24
  Polysacc_synt_3 122 svvgvivaivlAl.lglgvwALvigtllssllslvllwlas 161
                      s + +++a+ lA  lglg   Lv+ ++++ +l++   w ++
       CDO71927.1 417 SGAFIAAAVGLARgLGLGDAGLVWANVANLALRAGYAWAFV 457
                      44445566666643688888999999999999988888766 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   8.5     3e-11   1.8e-07       3     263 ..      15     296 ..      13     306 .. 0.79
   2 ?    0.2   5.0     0.067     4e+02      61     193 ..     308     462 ..     299     499 .. 0.54

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3e-11
  Polysacc_synt   3 kgvivlllsqlitkllafvtlvylarilgpegfGlvalalaiv.tllviltdlGlnaalvreiakyrek......kelvslillnvllvllvlvll 91 
                    +  ++l+l ql+++ + f+    l r+++p  fG  ++ + ++ +++  l+  G+ +al r+   +++       ++l+++i l  +l+ + +++l
     CDO71927.1  15 ASGSSLVLLQLFSRVVTFILNQALVRLVSPQVFGTTSIQFELLlSTILFLSREGVRNALLRAPPSTKSApdrqitSQLITNISLLPVLLGIPTAML 110
                    567899*******************************9999752677788899***********99999998888888888888888888888888 PP

  Polysacc_synt  92 fllllliaa...flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfld...ivaavlgavlaalvgg 181
                     ++ +l +    + ++p++++ + ++ l+  + +    ++   +++l++   +  + ++  l  v  +++a+   +    +va +lg++++ l+ +
     CDO71927.1 111 SAIVYLSSSsstTASQPHFRTSVTLYVLAAFFELLSEPLYIRTQNELRFHVRVRAEGTAVMLKTV-VTFVALVCASEewaLVAFALGQTAYGLTML 205
                    88888887688899999999999999999998888899999999999888888777777777666.445555555552555555555555555553 PP

  Polysacc_synt 182 ivslavlrkkfr............prfvilslklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivt 263
                      +++  r   +             +  ++sl    el+s s+ +t+ sl+  ++t  d +l ++l+   + G Y +a+++ ++i ++++ ++ 
     CDO71927.1 206 ASFMMACR---GtldfrpkrvsftTEGGTKSLLFEPELFSLSVVMTGQSLIKHFLTEGDKFLVSRLSPLADQGGYAVAANYGSLIARIVFQPIE 296
                    33333333...134567877555444444445555689*************************************************9998776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.067
  Polysacc_synt  61 vreiakyrek.kelvslillnvllvllvlvllfllllliaa..............flglpelavlylilalmll.......llvgvasfrrglfqg 134
                    +   ++ +ek +   s+  l++  ++l+++ll+++ ll+ a              +l +++la+  + +  +++       +     +f+++    
     CDO71927.1 308 SSTASEPEEKkTAVRSKDALQTAATVLLTLLLTFTHLLLLAitfgppylplaislVLPRKYLATSAPSILHVYVyyipmmaFNGVLEAFFASAASP 403
                    444444444454555555555555556666666665555566777888888888844444444444433333331000110222222333332222 PP

  Polysacc_synt 135 lermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslavlrkkfr 193
                            +  v +  +++++v++a  l+l  +++v++ v+   +++ +++a++r++f+
     CDO71927.1 404 ADLRAQSRWMLVFSGAFIAAAVGLARGLGLGDAGLVWANVANLALRAGYAWAFVRRYFH 462
                    22222222222333333444444444444446777777777777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3656.67
//
Query:       CDO71928.1  [L=318]
Description: hypothetical protein BN946_scf184940.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-25   88.9  17.4    3.1e-25   88.9  17.4    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.9    7.6  15.4      0.087   12.0   9.5    1.8  2  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9  17.4   3.4e-29   3.1e-25      89     321 ..       1     255 [.       1     261 [. 0.76
   2 ?   -0.4   5.7     0.046   4.1e+02      10      59 ..     259     304 ..     253     315 .. 0.63

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 3.4e-29
       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll...peepperkrksp 184
                 ++ rv+q++g+++++++ga +i d+++ eerg a+g++ +++ +G++++pl gg+ +++l+Wr + + l +++l+af+ ++l+l   ++++++r++ ++
  CDO71928.1   1 MFWRVVQAFGSSSGMSVGAGAIGDIYKLEERGTAMGIFFGAALFGPAIAPLYGGIATHYLSWRMAQWGLFVMGLFAFMPVALFLpetLDPERRRRWGAT 99 
                 689**************************************************************************9767777665555555555555 PP

       MFS_1 185 keeekgtgpaplvp.awkallkdpvlwillialllfffgfsglltllpl.y.lqevlglsglllaglllallalvgailallagrlsdr.......... 270
                 +e  k        p    all++p +  ll+al+++++ ++ ++ ++pl y + +++++++  l+g+++  ++l+++i+a+lagrlsdr          
  CDO71928.1 100 EEHQKPILLN---PfESLALLRSPNI--LLVALAGTTTLITDFVLMIPLaYtIGKQYNITNEALIGAFFLPAGLGNIIGAPLAGRLSDRvvvewrkrrg 193
                 5552222222...2424555555545..666666665555559999999543466666667799999**********************9999988888 PP

       MFS_1 271 ...lgrrrrlllallllllaalglallavt.......ssavllllvlvliGfglgfv.fpsl 321
                    ++  r +    ++++l+ ++++l ++t          vl l+ l++ G+g+ +v +p++
  CDO71928.1 194 gvwVPEDRLRASLWGAGFLVPMSVLLSGLTtqfvpgtPGIVLNLVWLFMNGIGVDIVlSPAF 255
                 88644466666677777777777777777777777655567777799999998888835544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.046
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf 59 
                 + ++i++ +lp ++ ++  i +++ g +++++a++ + ++l++   +dr+
  CDO71928.1 259 IIAGIIACILP-II-NT--IGVAATGAIFAAFAWFGWGLILFTIKYGDRM 304
                 33444444454.33.33..4467777777777777777777777777776 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3      0.33     3e+03     100     107 ..      46      53 ..      28      83 .. 0.46
   2 ?   12.0   9.5   9.7e-06     0.087      83     195 ..     126     288 ..     113     315 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.33
                 xxxxxxxx RF
      CitMHS 100 pivlslak 107
                 p++ +l+ 
  CDO71928.1  46 PAIAPLYG 53 
                 33333332 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9.7e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
      CitMHS  83 allsafvsndgvvlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa........................................ 141
                 a l++  ++ +++++mip++ +++k+ + ++ +l+ +  l+a++g+   +iG p  +a                                         
  CDO71928.1 126 A-LAGTTTLITDFVLMIPLAYTIGKQYNITNEALIGAFFLPAGLGN---IIGAP--LAGrlsdrvvvewrkrrggvwvpedrlraslwgagflvpmsvl 218
                 2.3355556689**************99999999999999999999...88999..4446688889999999999999999888888888887777777 PP

                 .....xxxxxxxxxxxx..xxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 142 .....arpglslpnlll..lalllvgl............lplvllfmfgvalalpvnapkvkkqkaiieaiar 195
                      +++ +  p ++l  ++l+++g+            ++++ ++   +++  ++n   v++  ai++a a+
  CDO71928.1 219 lsgltTQFVPGTPGIVLnlVWLFMNGIgvdivlspafraFIIAGII---ACILPIINTIGVAATGAIFAAFAW 288
                 7777733333333333344333333334443333332221111111...333333344455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2142.95
//
Query:       CDO71929.1  [L=417]
Description: hypothetical protein BN946_scf184940.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   12.2   0.0       0.18   11.4   0.0    1.3  1  DUF5579   Family of unknown function (DUF5579)


Domain annotation for each model (and alignments):
>> DUF5579  Family of unknown function (DUF5579)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.8e-06      0.18      35      80 ..      65     110 ..      41     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.8e-06
     DUF5579  35 pvrgfrcqaracvalasasgalvanvlrnrsvllqwrlapaeaarl 80 
                  vr f+c++        a+g+ v  vl n+++ lq   ap +a  l
  CDO71929.1  65 EVRNFQCDSTVEHVNLVAGGSWVVVVLYNGTLQLQELGAPCPAVTL 110
                 69*********************************9999*999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2860.79
//
Query:       CDO71930.1  [L=431]
Description: hypothetical protein BN946_scf184940.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-52  176.7   0.2    4.2e-52  176.0   0.2    1.3  1  CDC73_C   RNA pol II accessory factor, Cdc73 family, C-termin
  ------ inclusion threshold ------
       0.11   11.8   0.0        2.4    7.4   0.0    2.4  3  CDC73_N   Paf1 complex subunit CDC73 N-terminal


Domain annotation for each model (and alignments):
>> CDC73_C  RNA pol II accessory factor, Cdc73 family, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.2   4.7e-56   4.2e-52       4     157 .]     254     420 ..     251     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 4.7e-56
     CDC73_C   4 kPiIlvpssasslltlsnvksfledgkyvppdekkkeas.....kaenevsisrklkkiad.....skkvrflvvdspekltk...edWerVvAVfvtg 89 
                  P I+++ss++sl+t++nv++fl+d ++ p+++++++a      +ae+ + i rk   i++     ++++r++vvds+e+l+k   + W+rVv+V++tg
  CDO71930.1 254 IPDIMISSSPTSLVTMYNVRRFLQDAVFEPSQDARARAVaegnpRAEDVIPIYRKRTLIDSsgretESQTRYFVVDSAEALAKfgpDAWDRVVCVMTTG 352
                 577*******************************999989999999******996666655999999**************99999************* PP

     CDC73_C  90 qewqfksykwsepaelFkkvkgvyvkyeeeevpeevkgwnVkslqlsrskRhrDravveefwealeef 157
                 q+wqf+ ykw++p++lF++vkg+y+ ++++++++++k+wnV++l+++ ++Rh D++vv++fw+ l+++
  CDO71930.1 353 QAWQFRPYKWQDPKTLFHHVKGIYFSWTNDPPNPKIKDWNVTELKIDPNRRHVDKSVVAHFWRILDQW 420
                 *****************************************************************987 PP

>> CDC73_N  Paf1 complex subunit CDC73 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.73   6.5e+03       2      21 ..       5      24 ..       5      28 .. 0.69
   2 ?    1.4   0.0     0.018   1.6e+02      50     103 ..      68     123 ..      60     127 .. 0.80
   3 ?    7.4   0.0   0.00027       2.4     204     243 ..     191     232 ..     174     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.73
     CDC73_N  2 aDaLsllrqyninkkeiiek 21
                +DaL +lrq   +k  i+ +
  CDO71930.1  5 TDALIVLRQAIKKKNAITYT 24
                58999999976666666554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.018
     CDC73_N  50 aakeyytlesllfllknvelkHpvYvkqaaae..sipvvrrpDRkdLlayLngetk 103
                 ++++++ l +++      + + ++Y+kq   +   +  v+  +Rk + ++L+ +t+
  CDO71930.1  68 NPNDFFPLGAVYLAWLLRDASSAEYMKQVRENgyTVGFVSVTERKAVADWLEDKTQ 123
                 67888888888766666678899*****9965226888*************99886 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00027
     CDC73_N 204 e.lekrslvd.ldvdvtrdiisrErvwrtRttvLqskgksfa 243
                 + l++r ++d +d++v + i ++E   + R+tvL+  + +f+
  CDO71930.1 191 SpLKRRYVADpADLEVVKKIKENEIELQDRNTVLRGIKPNFQ 232
                 3355666666256**********************9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3021.30
//
Query:       CDO71931.1  [L=389]
Description: hypothetical protein BN946_scf184940.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-16   61.0   0.0    2.4e-13   50.4   0.0    2.3  2  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.026   14.8   0.0       0.23   11.8   0.0    2.3  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00022         2     103     160 ..      39      92 ..      26     101 .. 0.88
   2 !   50.4   0.0   2.6e-17   2.4e-13       1      61 [.     213     274 ..     213     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00022
                 --EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEE CS
       eIF2A 103 rNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlT 160
                 + t ++sp g+l++ a    ++  + i++ ++ + ++++  +n +++ +sp g+y+ T
  CDO71931.1  39 ARTFKYSPDGRLFAYA----IPTGVRIYQAESAQLLQELSLSNIVDISFSPRGTYLST 92 
                 5688899999999988....666789*****************************998 PP

  == domain 2  score: 50.4 bits;  conditional E-value: 2.6e-17
                 EEESSECEEEEEE-TTTTEEEEEEE.E--TT-CEEEEEE.EEEESSSTT--EEECCEESSS. CS
       eIF2A   1 ksffkadkvklkWnkkGtsllvlvstevdktnksyyget.elyliklkkkksevvelkkegp 61 
                 k+ffka++ ++kWn  Gt++lvl++t+vd+ nksyyget  lyl+++ ++++++v l+kegp
  CDO71931.1 213 KTFFKAQRSQIKWNTLGTQVLVLTQTDVDQANKSYYGETgGLYLLSAAGNFDCRVALDKEGP 274
                 89************************************946*******************97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.6e-05      0.23      38      80 ..      36      77 ..      26      90 .. 0.89
   2 ?   -0.1   0.0      0.13   1.2e+03      59      82 ..     105     128 ..      97     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80
                 d   r ++++pdg+l+a a+  g vr+++aes++++++ls ++
   CDO71931.1 36 DVPARTFKYSPDGRLFAYAIPTG-VRIYQAESAQLLQELSLSN 77
                 6678999************9988.9***********9998765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.13
  ANAPC4_WD40  59 dgevrlldaesgkvvhslsvksek 82 
                    ++r++++++g+ + ++s ks++
   CDO71931.1 105 HKNLRVFSVSTGEELVAFSQKSQE 128
                  557899999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2869.32
//
Query:       CDO71932.1  [L=250]
Description: hypothetical protein BN946_scf184940.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1905.10
//
Query:       CDO71933.1  [L=102]
Description: hypothetical protein BN946_scf184940.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-24   85.0   9.0    4.8e-24   84.8   9.0    1.0  1  Hydrophobin  Fungal hydrophobin
  ------ inclusion threshold ------
       0.14   12.0   5.0        0.1   12.4   2.8    1.9  2  CoatB        Bacteriophage coat protein B


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   9.0   5.3e-28   4.8e-24       1      80 []      22     100 ..      22     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 5.3e-28
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg++qCCn+vq a++ +av+ ll ++g+ ++d+t qvgl+C+p++v+gv++g +C+++pvCCennsf++li++gC+p+
   CDO71933.1  22 CATGPIQCCNQVQPATS-TAVAPLLAAIGVAVQDVTAQVGLGCTPVSVIGVASGGQCDAHPVCCENNSFGSLISIGCVPV 100
                  9************9865.7999********************************************************97 PP

>> CoatB  Bacteriophage coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.5    0.0042        38      14      29 ..      36      52 ..      32      53 .. 0.81
   2 ?   12.4   2.8   1.2e-05       0.1       3      28 ..      47      72 ..      45      72 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0042
       CoatB 14 aittAkad.iaaiGaaV 29
                a +tA+a+  aaiG+aV
  CDO71933.1 36 ATSTAVAPlLAAIGVAV 52
                56899999459*****9 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.2e-05
       CoatB  3 asgvdvsaVttaittAkadiaaiGaa 28
                a gv v +Vt+ ++ + +++ +iG+a
  CDO71933.1 47 AIGVAVQDVTAQVGLGCTPVSVIGVA 72
                779*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 822.77
//
Query:       CDO71934.1  [L=291]
Description: hypothetical protein BN946_scf184940.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.86   10.1   4.4       0.61   10.6   0.3    2.2  2  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.5      0.04   7.2e+02      56      80 ..      86     126 ..      20     140 .. 0.58
   2 ?   10.6   0.3   3.4e-05      0.61      19      77 ..     145     204 ..     142     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.04
        FtsX  56 f.............s...selkisidlitvliiivllllla 80 
                 f             +   + ++is  l++vl++ +ll++la
  CDO71934.1  86 FrihfgvvpeaeveAgplPKVPISPTLLDVLVTGILLTFLA 126
                 13433444433333144577777777777777777777776 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 3.4e-05
        FtsX  19 llllteillitlvalviGlglgllaaqllsdvllssvfs.selkisidlitvliiivlll 77 
                  +l++e++l  ++++v+ ++  l + +l +++++++  s ++  i++d+  + +++  +l
  CDO71934.1 145 TVLIWEAALPPCICAVLTVITYLTLVYLTNHFISTFSRSdTRGVIQVDIDYWDLTFQAIL 204
                 589********************************9888866666666665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2290.33
//
Query:       CDO71935.1  [L=1292]
Description: hypothetical protein BN946_scf184940.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-16   60.7   9.1    6.1e-08   32.7   1.9    2.6  2  Myb_DNA-bind_2  Rap1 Myb domain
      0.003   18.1  10.9       0.31   11.7   1.7    3.4  3  Rap1-DNA-bind   Rap1, DNA-binding


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_2  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.8   1.7e-11   1.5e-07       2      55 ..       6      65 ..       5      70 .. 0.85
   2 !   32.7   1.9   6.8e-12   6.1e-08       2      55 ..     103     159 ..     102     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.7e-11
  Myb_DNA-bind_2  2 RlpyteeeDaailkyvkekerspasvkGnkiwkelekkh......ltrHsWQslkdRylk 55
                    R+ +t+e+D+++ ky+ +++ +++   G k+++ l ++          H+WQs+++Ry++
      CDO71935.1  6 RAEFTPEQDKLLAKYIAKYNPDKKGRLGRKLYERLVENTngdwpfAKYHTWQSWRERYRQ 65
                    999********************************9987223322346**********97 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 6.8e-12
  Myb_DNA-bind_2   2 RlpyteeeDaailkyvkekerspasvkGnkiwkelekk..h...ltrHsWQslkdRylk 55 
                     R+ ++  +D  +++y+     ++ +  G k wk +e+k  h     rH+WQs+++Ry+k
      CDO71935.1 103 RVFFSRGDDDRLIEYL--ATHQGDRLLGQKFWKTMEEKvgHlawFQRHTWQSWRERYKK 159
                     88899***********..5556678***********98443222469***********9 PP

>> Rap1-DNA-bind  Rap1, DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.32   2.9e+03       1      20 [.       8      27 ..       8      52 .. 0.85
   2 !   11.7   1.7   3.4e-05      0.31      64      93 ..      53      84 ..      49      98 .. 0.80
   3 !   10.8   0.6   6.2e-05      0.56      49      76 ..     112     159 ..      83     163 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.32
  Rap1-DNA-bind  1 kftaedDyaLatevkkqfla 20
                   +ft+e D  La+ + k++  
     CDO71935.1  8 EFTPEQDKLLAKYIAKYNPD 27
                   59999999999999998755 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.4e-05
  Rap1-DNA-bind 64 rHtensWrdryrKfvley..gidkyikyyeke 93
                    Ht +sWr+ryr    ++  +i++yi+ y   
     CDO71935.1 53 YHTWQSWRERYRQNEARFepMIQRYISRYHSD 84
                   5***********987765559********954 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 6.2e-05
  Rap1-DNA-bind  49 t..............varefFkelakkkp......rHtensWrdryrK 76 
                                   +  +f k++ +k        rHt +sWr+ry+K
     CDO71935.1 112 DrlieylathqgdrlLGQKFWKTMEEKVGhlawfqRHTWQSWRERYKK 159
                    344455555555555778888888655433455669***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 8678.34
//
Query:       CDO71936.1  [L=892]
Description: Glycoside Hydrolase Family 31 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-150  500.6   1.6   5.8e-150  500.3   1.6    1.1  1  Glyco_hydro_31   Glycosyl hydrolases family 31
    1.1e-34  119.1   0.0      2e-34  118.3   0.0    1.4  1  NtCtMGAM_N       N-terminal barrel of NtMGAM and CtMGAM, malt
    2.2e-14   53.5   1.2      1e-13   51.4   1.2    2.2  1  Gal_mutarotas_2  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.3   1.6  9.7e-154  5.8e-150       1     440 []     250     766 ..     250     766 .. 0.94

  Alignments for each domain:
  == domain 1  score: 500.3 bits;  conditional E-value: 9.7e-154
                     EEEE-..SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTTSS.-H.HHHHHH CS
                     xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxx RF
  Glyco_hydro_31   1 yvflG..ptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdkerFp.dp.kemvde 91 
                     y+++G  ++p  v++qy+e++G pa +P+w++G+hq+r+gy++  +v++v+ ++++a+iPl+++++Didym kr+ ft+d++ Fp +  +e+vd+
      CDO71936.1 250 YFLAGseTDPTVVARQYAEVVGAPAEVPYWSFGLHQCRFGYQNFIDVANVITNYSAASIPLETMWTDIDYMYKRRIFTVDPDYFPlNRmREIVDY 344
                     888997556999*************************************************************************9777****** PP

                     HHHTT-EEEEEE-SEE.E.-T..TSHHHHHHHHTTSBECCCCCS..TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCT...CT--EEEE-STT CS
                     xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
  Glyco_hydro_31  92 lhekgvklvvivdpaiskqee..eyeafdegkekgvflknkdgs..ykgk.wpgstafpDftnpearewwkkelkkflld...lgvdglwiDmne 178
                     lh++++++v+++dpa+++  +  +y +fd+g++++v+lk ++gs  + g+ wpg+t+fpD++n++++ +w++e+  f++    l++dg wiDmne
      CDO71936.1 345 LHAHNQHFVLMTDPAVAYL-PgeGYGPFDRGTAADVWLKAANGSspFLGAvWPGVTVFPDWFNSRTQGYWNNEFAMFYSPesgLDIDGAWIDMNE 438
                     **************99764.3469**********************88888***********************999985699************ PP

                     TB.SCCCCHH.HHCCCTS...........................................................CETTCC....HHHHCCCH CS
                     xxxxxxxxxx.xxxxxxx...........................................................xxxxxx....xxxxxxxx RF
  Glyco_hydro_31 179 psnfeegsds.eekeake...........................................................tkaags....hydvhnly 209
                     ps+f+++++s + ++a+e                                                               ++    +yd+hnly
      CDO71936.1 439 PSSFCNYPCSdPFEQAREqdlpparstlppdpatpifgqttlqkrvdhshddvqnppyhianfagsgalsdktaytdA--IHAngliEYDTHNLY 531
                     **********888877779**************************************************999887542..3335689******** PP

                     HHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHH.HTTT--SEEEECT-SG.HCHHHHHHHHHHHHTTS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 210 gllmakatyeglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresipallsf.slsGvpfwgaDigGFe.ntteelyaRWvqlGafs 302
                     g++m+ at++++ +++p +r++++tRstfaG++  +++W+Gdn s+W++lr+si+++l + +++ vp++gaDi+G++ ntte l+aRW+ +Gaf+
      CDO71936.1 532 GTMMSTATHNAMLARRPGQRTLVITRSTFAGAGTRVGKWLGDNFSQWDHLRQSISGILGMaGVFHVPMVGADICGYAeNTTETLCARWALVGAFY 626
                     ************************************************************9***************9999*************** PP

                     SSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH-TT-CCCCC--S-EEETTTEEE----STT-SEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 303 PffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplflefpedektfdiddqfmfGdsLLvaPvleeeatsv 397
                     Pf+rnH+++++++qe+++++  v+eaar+a+++RyrL++ylYt+f+ ah++g+pv++pl+++fp+d +tf id+qf+fGd++Lv+Pvlee++tsv
      CDO71936.1 627 PFMRNHNADTSISQEFYRWPT-VAEAARNALDIRYRLIDYLYTAFHTAHADGTPVLNPLWYKFPKDANTFGIDTQFFFGDAILVSPVLEENTTSV 720
                     *******************98.************************************************************************* PP

                     EEEE-SSEEEETTT-..-EEESSEEE.EEE--TTSS-EEEETTEEE CS
                     xxxxxxxxxxxxxxx..xxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 398 evyLPggkWydfwtg..ekyeggqtv.eltapldeiplfvraGaIi 440
                     +vy P++ +ydf++   ++++gg  v  ++++l++ip+ +++Ga++
      CDO71936.1 721 RVYYPDEAFYDFHSLtrTHVKGGGFVeLTDVNLTSIPVAIKGGAVL 766
                     *****99*****86633555565544233344667*********97 PP

>> NtCtMGAM_N  N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   3.3e-38     2e-34       2     116 .]      46     158 ..      45     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 3.3e-38
  NtCtMGAM_N   2 ltadlklagsacsvygndieelkleveyetddrlrvkItdannkryevpeellprpssssss.ssksdnkelevsvtnepFgfkvtRkstgevlfdtsg 99 
                 lta+l lag++c+vyg+die+l lev+ye+++r++v+Itd+++ ryevpe++lprp+++    ++++    +++++t++pF+f++ R st+evlf+t  
  CDO71936.1  46 LTAELVLAGQPCNVYGTDIEKLALEVTYESSSRIHVEITDPSDARYEVPESVLPRPHANILLsPHTA---AIRLNYTTSPFSFSIYRASTHEVLFSTGS 141
                 79******************************************************98844303333...49*************************** PP

  NtCtMGAM_N 100 gplvfedqflqlstklp 116
                 +p+vfe q+l+++t lp
  CDO71936.1 142 HPIVFEPQYLRVKTDLP 158
                 ***************98 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   1.2   1.7e-17     1e-13       2      63 ..     161     224 ..     160     226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.7e-17
                      -EEEEEES-SS-SS-TTEEE..EE-----TS-HCC.CTS-SCEEEEEEEE..TCEEEEEE--SSSE CS
  Gal_mutarotas_2   2 ehvyGlGEkagplnlrgtry..rlwntdafgyeaessdplYgsiPfmisl..segyGvfvdnpaet 63 
                       ++yGlGE++++++l ++ y  +lw +da+g  +    +lYg++P+++++  s ++Gvf++n+  +
       CDO71936.1 161 ANIYGLGEHTDSFRLPTHNYtrTLWSRDAYGVPQG--TNLYGNHPIYFEHrtSGTHGVFLLNSNGM 224
                      68****************77669********9999..5**************666*******9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 6071.49
//
Query:       CDO71937.1  [L=283]
Description: hypothetical protein BN946_scf184940.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1897.14
//
Query:       CDO71938.1  [L=669]
Description: hypothetical protein BN946_scf184940.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 4195.73
//
Query:       CDO71939.1  [L=534]
Description: hypothetical protein BN946_scf184940.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-08   34.4   3.5    1.4e-08   34.4   3.5    2.9  2  Shugoshin_C  Shugoshin C terminus
    3.2e-08   33.3   3.2    6.3e-08   32.4   3.2    1.5  1  Shugoshin_N  Shugoshin N-terminal coiled-coil region
  ------ inclusion threshold ------
      0.011   15.8   3.6      0.022   14.8   3.6    1.4  1  DUF4192      Domain of unknown function (DUF4192)


Domain annotation for each model (and alignments):
>> Shugoshin_C  Shugoshin C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.6      0.91   5.5e+03       3       9 ..     291     298 ..     291     300 .. 0.67
   2 !   34.4   3.5   2.3e-12   1.4e-08       2      25 .]     405     427 ..     404     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.91
  Shugoshin_C   3 psRra.rk 9  
                  psR++ rk
   CDO71939.1 291 PSRSReRK 298
                  78888544 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 2.3e-12
  Shugoshin_C   2 RpsRrarkvvsYKEPSLnsKMRRP 25 
                  R++R  rk+++Y+EP+Ln+KMR+P
   CDO71939.1 405 RERRV-RKSINYAEPKLNTKMRKP 427
                  55555.7***************98 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   3.2   1.1e-11   6.3e-08       1      42 [.       6      47 ..       6      48 .. 0.98

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.1e-11
  Shugoshin_N  1 lKrkylrqNreLAKsNsalslkirelekevseLlsENlnLRe 42
                 +K+k+l+ N+ + K Ns+ls++i el++ +s+L  ENl LR+
   CDO71939.1  6 VKKKFLLANKHITKLNSTLSARIEELNAQISSLYVENLRLRA 47
                 7****************************************7 PP

>> DUF4192  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   3.6   3.7e-06     0.022     125     198 ..     231     304 ..     226     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-06
     DUF4192 125 vpdpaasplaaaavlaGrvvegsReelearlapvegaaaraaqrraaeraaaaleralarprdaerrsdpaevr 198
                 + ++++sp++ a+ ++ + ve++ +e+ea l++v++ +++ +++r+ era+a+ ++ l +p++ ++r++p++  
  CDO71939.1 231 PSPVPDSPIRKALEAEEVPVEPDEDEVEAILQAVTKRREKREKERESERARAQERDSLVDPSRSRERKKPRASE 304
                 5688999***************************9997677777778888888888888777777775444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1668  (0.0930336); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 3525.43
//
Query:       CDO71940.1  [L=593]
Description: hypothetical protein BN946_scf184940.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-49  168.4   0.0    3.7e-49  167.5   0.0    1.5  1  Pkinase          Protein kinase domain
    3.7e-24   85.4   0.0    9.9e-24   84.0   0.0    1.6  2  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
      0.011   14.6   0.1      0.016   14.0   0.1    1.3  1  Pkinase_fungal   Fungal protein kinase
      0.041   13.8   2.1      0.067   13.1   0.0    2.2  2  APH              Phosphotransferase enzyme family
      0.067   12.2   0.0      0.099   11.6   0.0    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
      0.073   12.7   0.5        3.8    7.1   0.5    2.3  1  RIO1             RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.0   1.2e-52   3.7e-49       1     264 []     269     591 ..     269     591 .. 0.85

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 1.2e-52
                 EEEEEEEEEESSEEEEEEE.....ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEEEEEE--TTEBHHHH CS
     Pkinase   1 yekleklGeGsfGkVykav.....eketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdelylvleyveggeladl 88 
                 y++ + lG+G f++V++a+     + e gk+vA+K+++ ++      k+ l+E++il+k++       ++ivrl ++fe+  +l+lv+e ++ + l ++
  CDO71940.1 269 YQVFSSLGKGMFANVVRARvlqgeSGEVGKEVAIKIVRSQESMY---KAGLKEVQILNKIRqadpedKKHIVRLERTFEHRGHLCLVFENLSMN-LREV 363
                 778899*******9987762222145678999999999886665...4569*******99877777789*********************9976.8888 PP

                 HH...HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  89 le...rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 ++   +++ l+ + ++ +a+q++ +l+ l + +i+H D+Kp+NiL++ +k +lK++D+G a+ ++++   t + +++ Y+APE++ +++y++++D+Ws+
  CDO71940.1 364 VKrfgKDVGLNIRAVRAYAHQLFLALSLLRKFSIMHADIKPDNILVNeQKTVLKLCDLGSASDASEND-ITPYLVSRFYRAPEIIMGHPYDPAIDIWSV 461
                 887867788**************************************66666*************988.****************************** PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS................................................. CS
     Pkinase 184 Gvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei................................................. 233
                 G++lyel+tgk +f+g+++++ +   +++      + g  + k+ ++ ++                                                 
  CDO71940.1 462 GCTLYELYTGKILFPGRTNNH-MLLLMME------LKGRFNSKMIKRAKFgeqyfdelgaflsveqdrvtgmdvvrkvhitqptrdlrqrilpsgsvkl 553
                 ***************666665.3333333......222222222222222333456669999************************************* PP

                 .......-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .......seeakdllkkllkkdpkkRltaeellqhpyl 264
                          ++ dll+k+l+ dp+kR+t +++l hp++
  CDO71940.1 554 kdeesklLMSFVDLLDKCLALDPSKRITPKDALLHPFI 591
                 ***988888999************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   3.3e-27   9.9e-24       5     218 ..     273     487 ..     269     503 .. 0.85
   2 ?   -2.1   0.0      0.62   1.9e+03     233     251 ..     563     581 ..     552     585 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 3.3e-27
                  EEEEEESSEEEEEEEEET.TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-.....BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg.ekekkevkVavKtlkeeateeekeelleeakimkkl.k.....hpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  ++lG+G f++Vv++++ + e+ +   +Va+K++++  +e+  ++ l+e++i++k+ +     +++iv+l     ++++l++v+e ++  +L++ +++ 
   CDO71940.1 273 SSLGKGMFANVVRARVLQgESGEVGKEVAIKIVRS--QESMYKAGLKEVQILNKIrQadpedKKHIVRLERTFEHRGHLCLVFENLSM-NLREVVKRF 367
                  68*************9987899999********55..455569999******998433333358********************9987.799998886 PP

                  .CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr  96 .ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                   ++  l+++ +  +a+q+  +++ L + +++H d+   N+L++e+k v k++D G a+d     + ++ +   ++  + apE+++ + +  + D+Ws 
   CDO71940.1 368 gKDVGLNIRAVRAYAHQLFLALSLLRKFSIMHADIKPDNILVNEQKtVLKLCDLGSASDA----SENDITPYLVSRFYRAPEIIMGHPYDPAIDIWSV 461
                  34678999999********************************987477********999....334445677888999******************* PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevlekl 218
                  G +l+E++t g+  +pg +n+++l  +
   CDO71940.1 462 GCTLYELYT-GKILFPGRTNNHMLLLM 487
                  *********.******99888876554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.62
                  HHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 233 elyelmkkcweedpeeRpt 251
                  ++ +l+ kc++ dp++R t
   CDO71940.1 563 SFVDLLDKCLALDPSKRIT 581
                  67899************87 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.3e-06     0.016     281     363 ..     316     428 ..     164     439 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-06
  Pkinase_fungal 281 r..........................lenrvhrrlvispvGkpiekaesp.kellealrDaIkghr.......sLflkagiLHrDiSenNilit 341
                                                +e+r h +lv+++    ++++ ++  + +   + a++++        sL++k  i+H Di  +Nil++
      CDO71940.1 316 LkevqilnkirqadpedkkhivrlertFEHRGHLCLVFENLSMNLREVVKRfGKDVGLNIRAVRAYAhqlflalSLLRKFSIMHADIKPDNILVN 410
                     13333444444444555556677888899*************999987554234444444555554322223338999***************** PP

  Pkinase_fungal 342 dskkegerkglLiDLDlakels 363
                     ++    +    L DL  a++ s
      CDO71940.1 411 EQ----KTVLKLCDLGSASDAS 428
                     55....4456677777777666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.2      0.67     2e+03     106     161 ..      10      73 ..       2      83 .. 0.64
   2 ?   13.1   0.0   2.2e-05     0.067     152     185 ..     382     414 ..     294     426 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.67
                 HCH..-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHH.......HHHHHHHH-- CS
         APH 106 hqvd.paalpladflaqdlellrqlesata.rllaselldlleeleeq.......vlaalaallp 161
                 +  + pa +p +d++++ +   r+ +++++ ++  +++++   e+e +       v ++laa+++
  CDO71940.1  10 SPRPpPAPSPRSDRPRTPPPTRRDGHEYKQeQQATPQTEP-DREIELElppspppVEETLAARRA 73 
                 4445466777778888888888888888887777777777.344444445777776666666655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.2e-05
                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TT CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvdpddg 185
                 + + ++    +     + +++H D++p+N+lv+++++
  CDO71940.1 382 AHQLFL----AlslLRKFSIMHADIKPDNILVNEQKT 414
                 222223....2334789****************5544 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05     0.099     276     320 ..     381     417 ..     340     422 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
  Pox_ser-thr_kin 276 yikfifLqiaLLyikiyelpdcenflhvDlkPdniLifdskekli 320
                      y + +fL ++LL         +   +h+D+kPdniL+ ++k+ l+
       CDO71940.1 381 YAHQLFLALSLL--------RKFSIMHADIKPDNILVNEQKTVLK 417
                      555555533333........234569***********99988775 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.5    0.0013       3.8     109     146 ..     379     416 ..     283     437 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE CS
        RIO1 109 elyeevleemrklykeaglvHaDLSeyNvlvdedkvvi 146
                 ++y++ l     l+++  + HaD+   N+lv+e+k v+
  CDO71940.1 379 RAYAHQLFLALSLLRKFSIMHADIKPDNILVNEQKTVL 416
                 34444444456677789999999999999999997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4067.90
//
Query:       CDO71941.1  [L=343]
Description: hypothetical protein BN946_scf184940.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-14   52.7   0.0      7e-14   52.2   0.0    1.2  1  Cyclase   Putative cyclase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   3.9e-18     7e-14      17     135 ..      75     266 ..      25     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 3.9e-18
     Cyclase  17 p..................islsehtGTHlDapgHfae...kti................................delpleelvgpavvldvsak... 59 
                 p                  +++++++GT++D++ Hf       +                                ++ + + ++g++v++d+ +    
  CDO71941.1  75 PpshkvifmkefgavqddiLHINTQSGTQWDGLKHFGLchhG-LfyqgtpasffksgdiqitsptdvdpdlikygiHNWAQHGICGRGVLIDLVKYyee 172
                 245556666666777777799**************9444331.13334444445555556666666666666666699999************655666 PP

     Cyclase  60 .......aaaedyei.....itaedleaalakqgveikpgdivlirTgwskrl............edkekyrnpglseeaaewlaekgvkavGvDtlsv 134
                        +            i  +d+ a+++kqgv+ ++ di+++r g++kr+            e ++++ +   +e++ ++l++++++av+ D++++
  CDO71941.1 173 tlgklpyD------PvtahgIPLADILACAKKQGVTFRKADILILRAGFMKRYnsateeernaigEREDAFAGIEQTEDVKRFLWDNHFAAVASDQPAL 265
                 66665541......133344799******************************999887777766545666667779********************98 PP

     Cyclase 135 D 135
                 +
  CDO71941.1 266 E 266
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 2297.05
//
Query:       CDO71942.1  [L=266]
Description: hypothetical protein BN946_scf184940.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   34.4   0.0    3.1e-08   34.0   0.0    1.2  1  Cyclase   Putative cyclase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.7e-12   3.1e-08      38     135 ..      80     199 ..      47     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.7e-12
     Cyclase  38 tidelpleelvgpavvldvsak...........aaaedyei.....itaedleaalakqgveikpgdivlirTgwskrl............edkekyrn 108
                 +i++ + + ++g++v+ld+ +            +            +  +dl a+++k+g++ ++gdi+l+r g+ +++            +++e++ +
  CDO71942.1  80 GIHNWAQRGICGRGVLLDMVKFycdanggqlpyD------PmtthaVPTSDLVACAKKEGITFRRGDILLLRVGFIQKFysitqeerdsiaDKPETFAG 172
                 678888899**********666776666655431......03333389999*9************************99***98877777433355566 PP

     Cyclase 109 pglseeaaewlaekgvkavGvDtlsvD 135
                    se++ ++l++++++av+ D+++++
  CDO71942.1 173 IEQSEDMKRFLWDNHFAAVASDQPALE 199
                 777*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2031.74
//
Query:       CDO71943.1  [L=605]
Description: hypothetical protein BN946_scf184940.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-31  109.9  37.2    2.1e-18   66.4  25.4    3.4  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.31   11.5   0.1       0.31   11.5   0.1    3.5  3  DUF4231   Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   4.9   1.3e-16   1.1e-12       1     101 [.      46     144 ..      46     145 .. 0.93
   2 !   66.4  25.4   2.3e-22   2.1e-18     118     350 ..     137     421 ..     136     424 .. 0.75
   3 !    2.5   0.0    0.0062        56     147     188 ..     478     516 ..     476     549 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.3e-16
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++ a+fls+l+ ++++++lp  ++++++  ++++++l t+y l+++ +++++Grls+ +Grr    +++++ +lg++++ f++++ +l+++r+  Gl++
  CDO71943.1  46 IWAATFLSSLNTTLVATLLP-SISSEFN-KAHQASWLGTAYLLATCTFTPLYGRLSNVLGRRGANQVAVFFAGLGTVACGFSPNMEMLIAARFQRGLTQ 142
                 6889****************.9******.**********************************************66666977777*******999998 PP

       MFS_1 100 ga 101
                 g+
  CDO71943.1 143 GV 144
                 75 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 2.3e-22
       MFS_1 118 ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............................ 188
                 +rg+  g++++++slG+ lg +lgg++a+ lgWr++f+i  ++++++f+l  + l   +++++r+++++e                             
  CDO71943.1 137 QRGLTQGVAAVFNSLGMGLGGPLGGFVADRLGWRWAFLIQIPLFIVSFMLTSVNL--HYVTPGRSRSTREVlkridyggsatllisvlsilvflstrfs 233
                 79*********************************************99855555..444444444444444589999***************999999 PP

       MFS_1 189 ............................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgai 259
                                                +p p++ ++ +  k pvl  + ++ +l+++ ++++++ +p+++q+v+  s + +ag+ l   ++ + +
  CDO71943.1 234 eekpwssptvyvplalavffallfvyveLCIAPEPILAPFLLREKIPVL--IGMSNFLVAVSNFTVMYNFPTWFQTVMLTS-ASEAGAHLIPNGISVSC 329
                 8888887777777776666666666666666666666633333333333..44444444457777****************.8**************** PP

       MFS_1 260 lallagrlsdrlgrrrrl.llallllllaalglallavtssavllllvlvliGfglgfv.fpsllalasdlappeeagtasglfntagslgga 350
                 ++l+ag++++r+g+ + l l+++++ ++aa ++a++   s ++  +l+++ +Gfg ++v +++l+al+++ +p+++++  +g+ ++++++g +
  CDO71943.1 330 GSLFAGWYMHRTGKYKKLsLIFGIFPFVAATLIAMMREDSPPIQQWLSILPLGFGNAVVlQTTLIALLAH-LPADAMAVGTGFGQLFRGIGQV 421
                 *************94444044444455555555555555555666666666***9999955555555555.578***************9987 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.0062
       MFS_1 147 slgWravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 +l+ ravf+++a+ ++la +   + lp ++++   ++p+ ++
  CDO71943.1 478 ALSLRAVFIMAAGSTFLAYI---VRLPIPDKPLDQPRPRSRS 516
                 5678**************88...7787777777777766664 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4      0.17   1.6e+03      20      52 ..      53      83 ..      46      95 .. 0.70
   2 ?    0.4   0.6       0.1   9.2e+02      47      73 ..     212     238 ..     169     240 .. 0.67
   3 ?   11.5   0.1   3.5e-05      0.31       5      66 ..     336     396 ..     333     399 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
     DUF4231 20 lrlitivlgallpilvssklgagvsvlkiltal 52
                 +l t ++++llp ++s  +  +++++ +l ++
  CDO71943.1 53 SSLNTTLVATLLPSISS--EFNKAHQASWLGTA 83
                56778889999999999..56666666666443 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.1
     DUF4231  47 kiltallsalvailaaleeffrykerW 73 
                   +++ll ++++il  l++ f  ++ W
  CDO71943.1 212 GGSATLLISVLSILVFLSTRFSEEKPW 238
                 567888888888888888888877777 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 3.5e-05
     DUF4231   5 wyekkasrakrrfrllrlitivlgallpilvssklgagvsvlkiltallsalvailaaleef 66 
                 wy  + +++k++  ++ ++  v+++l++++ + ++++ +++l il+++ + +v++ + l+++
  CDO71943.1 336 WYMHRTGKYKKLSLIFGIFPFVAATLIAMMRE-DSPPIQQWLSILPLGFGNAVVLQTTLIAL 396
                 999*****************************.89******************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 3706.67
//
Query:       CDO71944.1  [L=135]
Description: hypothetical protein BN946_scf184940.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-24   84.7   8.6    6.5e-24   84.4   8.6    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   8.6   3.6e-28   6.5e-24       1      80 []      55     133 ..      55     133 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 3.6e-28
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg++qCC+s+++a ds+a ++llgllg++l+d+++ +gl+Cspi+v+gvg+g+sC +++vCCe+ s++gl+++gC+pi
   CDO71944.1  55 CDTGSIQCCESTETA-DSAAGAALLGLLGIVLQDVNVLLGLNCSPITVIGVGTGTSCGANTVCCEDDSHGGLVSIGCVPI 133
                  9**********9988.666778888******************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 913.44
//
Query:       CDO71945.1  [L=441]
Description: hypothetical protein BN946_scf184940.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3392.57
//
Query:       CDO71946.1  [L=307]
Description: hypothetical protein BN946_scf184940.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.027   12.7   2.7      0.036   12.3   2.7    1.0  1  Nop14           Nop14-like family
       0.12   12.6   0.1       0.21   11.9   0.1    1.3  1  RSB_motif       RNSP1-SAP18 binding (RSB) motif
        1.6    6.9   3.1        2.1    6.6   3.1    1.1  1  CDC45           CDC45-like protein
        3.3    5.7  12.6        4.1    5.4  12.6    1.0  1  DNA_pol_phi     DNA polymerase phi
        3.7    7.5   5.2        5.7    6.9   5.2    1.2  1  RXT2_N          RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.7     1e-05     0.036     361     463 ..      14     114 ..       5     118 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
       Nop14 361 lveseseeeeeeeeedeeeeedeeeeeeeeededdlsdlese....eeeeedeleeelleeekkaaeekkekk....kkkkkseekakeelpytfpcPe 451
                 +v++++ ++     ed e+++++e+++e ++ded++sd+ +     +   +de + ++l +      +++ ++      + ++++ + ++l   +  P 
  CDO71946.1  14 EVQHGDGQD-----EDGESADQDEDQDEGDSDEDSESDDVAGvgesQPPPDDE-DVKALRQLV----NSNVARayyvPLTPTARQVSLSTLTSSYGTPD 102
                 233333332.....222222222222222222222222222222223334444.222222222....22222234556677777778899999999999 PP

       Nop14 452 sheellellekr 463
                  h+el++ l+++
  CDO71946.1 103 FHQELNDFLRDY 114
                 999999999855 PP

>> RSB_motif  RNSP1-SAP18 binding (RSB) motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.9e-05      0.21       8      87 ..       9      85 ..       4      91 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
   RSB_motif  8 rdkerevereekerkrkrsrseekarerrrerskskekrreskaskekkkeeeppakllDdlFrkTkatPciYwlPLtee 87
                ++ erev++++++ +  +s++++++++     ++++e+   +   + +   +++ +k+l +l  +  a    Y+ PLt+ 
  CDO71946.1  9 EALEREVQHGDGQDEDGESADQDEDQDEGD-SDEDSESDDVAGVGESQPPPDDEDVKALRQLVNSNVAR--AYYVPLTPT 85
                444566666666666666666665555544.444445555555567888899999*********99996..7******86 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.1   0.00058       2.1     120     159 ..       8      47 ..       2      99 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00058
       CDC45 120 reayealeeeeesdeedeeeeeeddddeeeeeeeeedeed 159
                 +ea e+  ++ + ++ed e+ ++d+d++e +++e+++++d
  CDO71946.1   8 QEALEREVQHGDGQDEDGESADQDEDQDEGDSDEDSESDD 47 
                 4444444444444433332222222222222222221111 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.6    0.0011       4.1     623     690 ..       3      67 ..       1      77 [. 0.41

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0011
  DNA_pol_phi 623 dvLearenkegqaelfedededeeddeeeeeeddeededseedddeeesdedee.deddedvdeidelr 690
                    L+ +e +e++ +  +++ded e  +++e++ de d+d+++++d+  +  +++   ddedv+    lr
   CDO71946.1   3 TWLQRQEALEREVQHGDGQDEDGESADQDEDQ-DEGDSDEDSESDDVAGVGESQpPPDDEDVKA---LR 67 
                  56677777666665433333333333333333.2333333333333233223323444445443...44 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.2    0.0016       5.7      42      83 ..       5      48 ..       2      69 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
      RXT2_N 42 lsrnpierskrkkkekekeekeeeeedeegdeededdddee..e 83
                l+r++++ ++ ++ + ++e+ e++++de++de d+d+d+e+   
  CDO71946.1  5 LQRQEALEREVQHGDGQDEDGESADQDEDQDEGDSDEDSESddV 48
                56666666666666677777888888888888888888765331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2189.82
//
Query:       CDO71947.1  [L=113]
Description: hypothetical protein BN946_scf184940.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-21   75.3   8.7    5.5e-21   75.0   8.7    1.1  1  Hydrophobin      Fungal hydrophobin
  ------ inclusion threshold ------
        0.1   11.9   0.4       0.11   11.8   0.4    1.1  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   8.7   6.1e-25   5.5e-21       1      80 []      34     111 ..      34     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 6.1e-25
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  C+tg++qCC s+++a +s+a++kllgllg++l+d+++ +gl+Cs+i+vvgvg+gs C++q+vCCe++s+ +l+++gC p+
   CDO71947.1  34 CSTGTLQCCGSTEEA-SSPAAAKLLGLLGIVLQDVDVLLGLDCSAITVVGVGSGSGCSAQTVCCEDTSN-SLVSIGCLPV 111
                  9**********9998.56899*********************************************998.9*******97 PP

>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   1.3e-05      0.11     195     218 ..      76      99 ..      36     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
  Pantoate_transf 195 lsiptIGIGAGaacdGqvlvlhDl 218
                        i ++G+G+G++c++q + ++D+
       CDO71947.1  76 SAITVVGVGSGSGCSAQTVCCEDT 99 
                      4699***************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 919.09
//
Query:       CDO71948.1  [L=421]
Description: hypothetical protein BN946_scf184940.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-29  103.5   0.0    1.5e-29  103.2   0.0    1.1  1  Pkinase      Protein kinase domain
    2.2e-15   56.7   0.0    4.5e-15   55.6   0.0    1.4  1  Pkinase_Tyr  Protein tyrosine kinase
    8.7e-05   22.0   0.0    0.00017   21.0   0.0    1.5  1  Kinase-like  Kinase-like
    0.00021   21.3   0.0    0.00033   20.7   0.0    1.3  1  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.15   10.5   0.0        0.2   10.1   0.0    1.1  1  AceK         Isocitrate dehydrogenase kinase/phosphatase (Ace


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   4.2e-33   1.5e-29       1     193 [.     141     357 ..     141     402 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 4.2e-33
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerkgs 94 
                 y++l ++G+G+f++V+ a  ++ g+ vA+K++ k       +  ++v +E  i++ +     ++++ l+ ++e+ d++y+ +e+++++ l  ++ r+g 
  CDO71948.1 141 YHVLGQIGRGGFSRVMVAA-SSAGELVALKIMHKPTVLRLPNmrENVKMERDIMAMVIdrrKQFLLPLKAAWEQGDHIYFAMELCPQD-LRLRI-RSGF 236
                 78999***********999.79************9987665566***********98667799***********************77.77777.589* PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..............BCTTTSCGGGS-HHHH........TT CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..............ltsfvgtseYlAPEvl........ke 171
                 +s +e + ++ +++ +l  l + ++iH D+Kp+N+Li ++g + ++DFGla++ ++ ++              +++  gt+ Y+A E l        ++
  CDO71948.1 237 ISRREKQLLCMEMILALIDLQKLEVIHGDIKPDNFLITKTGRVVLSDFGLAQRPTRLNRccgttglydfadwsASETYGTPGYVALEGLcrrsahytGG 335
                 *****************************************************999998999****************************987766556 PP

                 SCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase 172 neyskkvDvWslGvilyelltg 193
                   +++ +Dv+slG++++el++g
  CDO71948.1 336 LAFTSRADVFSLGLVFVELFCG 357
                 7789****************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.2e-18   4.5e-15       5     241 ..     145     397 ..     141     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.2e-18
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS...SHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeea...teeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                   ++G+G f++V+ +  +     + + Va+K++++ +     + +e++  e +im  +   +++ ++ l ++  +++++++ +e++++ dL+  +r+  
   CDO71948.1 145 GQIGRGGFSRVMVAASS-----AGELVALKIMHKPTvlrLPNMRENVKMERDIMAMVidrRKQFLLPLKAAWEQGDHIYFAMELCPQ-DLRLRIRSG- 235
                  589*********99888.....8899****9976441112333666666777777666446777999999999************98.788777776. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE............. CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk............. 181
                     ++ +++  +++++  ++  L++ +++H d+   N L++++  v +sDfGLa++ ++ ++   +++      W a E+  +               
   CDO71948.1 236 --FISRREKQLLCMEMILALIDLQKLEVIHGDIKPDNFLITKTGRVVLSDFGLAQRPTRLNRCCGTTGLYDFADWSASETYGTPGyvaleglcrrsah 331
                  ..777777777788888899************************************9888888888888888899999988776667788888888** PP

                  ......EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHH CS
  Pkinase_Tyr 182 ......ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkc 241
                        fts++Dv+s G +  E+f+  ++p++ + n    +   + +  e+ ++ ++++y +m++ 
   CDO71948.1 332 ytgglaFTSRADVFSLGLVFVELFCGLDKPIWLMPNLAPEHPDMDTQTWEEMDEFEQQVYLMMTEG 397
                  **********************************99998888899999999999999999999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.8e-08   0.00017     146     194 ..     242     290 ..     230     369 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.8e-08
  Kinase-like 146 rlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvra 194
                  ++ll +++i     Lq++ ++hg++++dn+l  + g+++l +f+   r 
   CDO71948.1 242 KQLLCMEMILALIDLQKLEVIHGDIKPDNFLITKTGRVVLSDFGLAQRP 290
                  6889999999999******************************855444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.2e-08   0.00033     102     196 ..     165     287 ..      70     289 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.2e-08
                 HCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH................................HHHHHHHH--SSS-EE CS
         APH 102 laalhqvd.paalpladflaqdlellrqlesatarllaselldlleeleeq................................vlaalaallpgelptv 167
                 l al  ++ p+ l+l+ +++  ++++r++++   ++++  ll+ l +++eq                                 +++++al +  ++  
  CDO71948.1 165 LVALKIMHkPTVLRLPNMREN-VKMERDIMAMVIDRRKQFLLP-LKAAWEQgdhiyfamelcpqdlrlrirsgfisrrekqllCMEMILALID-LQKLE 260
                 446667776778888888866.999999999988555555555.6888888999999777777777777777766666666666666666666.799** PP

                 EE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfeda 196
                 ++HgD++p+N+l++   grv  + Df++a
  CDO71948.1 261 VIHGDIKPDNFLIT-KTGRV-VLSDFGLA 287
                 **************.55666.25588877 PP

>> AceK  Isocitrate dehydrogenase kinase/phosphatase (AceK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.7e-05       0.2     406     470 ..     216     284 ..     214     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.7e-05
        AceK 406 hlyierrltPLnlyleea....deeeleaaveeyGnaikqlaaaniFpgDmllkNFGvtrhgrvvfYDY 470
                 h+y    l P +l l+      +++e +    e   a+ +l + ++  gD+   NF +t++grvv+ D+
  CDO71948.1 216 HIYFAMELCPQDLRLRIRsgfiSRREKQLLCMEMILALIDLQKLEVIHGDIKPDNFLITKTGRVVLSDF 284
                 6777777777777666554444566666677888899*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2795.70
//
Query:       CDO71949.1  [L=1214]
Description: hypothetical protein BN946_scf184940.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-72  243.9   0.0    2.4e-72  243.5   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
    0.00054   19.6   0.0     0.0012   18.5   0.0    1.5  1  DUF4218   Domain of unknown function (DUF4218)


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.5   0.0   2.7e-76   2.4e-72       1     241 [.     281     518 ..     281     519 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.5 bits;  conditional E-value: 2.7e-76
       RVT_2   1 ktyrlvslPkdrkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 k+++lv+ Pk+rk i +rWvf +k+    +++ karlva+Gfsq+ g+dyd++f+Pv+r+++vrL+lal+a e++ +  ldv  a+L ++l+ee+y+ q
  CDO71949.1 281 KVFELVDRPKGRKVIKNRWVFDIKS----DGRKKARLVAKGFSQVEGIDYDQIFSPVVRFETVRLILALSALENWYITGLDVRNAYLYGKLEEEIYMEQ 375
                 699*********************5....9********************************************************************* PP

       RVT_2 100 PpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegk.livalyvddlliagsdikiledvkkelakkfklkdlg 197
                 P Gf+  ++e+kv +L +slyGlkqa+l+W +++++ +k+lgf+r  +  Gl++  + +g  +iv +yvdd l  g++  ++e++k ++ +k++ +dlg
  CDO71949.1 376 PEGFTAKGQEHKVLQLLRSLYGLKQAGLAWWRTLNESMKELGFKRLVSDAGLFIFRDKNGLlVIVVVYVDDTLFCGPNKALVEKMKAKFMEKWECRDLG 474
                 *****************************************************9998998868899********************************* PP

       RVT_2 198 kvskfLGieiaqeaggiklsladyiakvvkkfeltdaktvatPl 241
                 + ++fL + i+++ ++i++ + +y++kv++  ++++ak+  tPl
  CDO71949.1 475 EPKEFLRMRIQRSGSTIRIDQCAYLEKVLQRCGMQNAKPAPTPL 518
                 ****************************************9997 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.3e-07    0.0012      38      83 ..     958    1003 ..     954    1016 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.3e-07
     DUF4218   38 vHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsi 83  
                   H  +H++d +++aGP  + + +p+eR+  +l   +  + +p  si
  CDO71949.1  958 IHALLHIADSIRIAGPAWASWAFPMERYCGRLGPAIGSRRHPYTSI 1003
                  6999*****************************9999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8433.35
//
Query:       CDO71950.1  [L=105]
Description: hypothetical protein BN946_scf184940.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   46.1   0.8    5.3e-12   45.7   0.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.8     3e-16   5.3e-12      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO71950.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 701.21
//
Query:       CDO71951.1  [L=307]
Description: hypothetical protein BN946_scf184940.g98, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-62  209.6   0.0    1.3e-47  162.7   0.0    2.1  2  DUF4419   Domain of unknown function (DUF4419)


Domain annotation for each model (and alignments):
>> DUF4419  Domain of unknown function (DUF4419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   3.5e-17   6.3e-13       1      36 [.      59      94 ..      59      95 .. 0.97
   2 !  162.7   0.0   7.4e-52   1.3e-47     117     302 .]      93     303 ..      91     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 3.5e-17
     DUF4419  1 ngfveavleAyaehlhLvlrPDdvWlaIltqlsfyv 36
                ngfv++vl+Aya h+hLvlrPDdvW+aIltql fy 
  CDO71951.1 59 NGFVRTVLSAYACHRHLVLRPDDVWIAILTQLCFYF 94
                8*********************************95 PP

  == domain 2  score: 162.7 bits;  conditional E-value: 7.4e-52
     DUF4419 117 yfeykvsllCGiPsvtLlGekeDWekllerlekLkefgeelkewaklLrpildrfvesfdepdseenkeFWnkivkeeseegsgeselsGWitaFcvyd 215
                 yf+y++ ++CGiP++tLlG+++DW +ll+rl++L ++g e+++wa++Lrp+l+rfve fd+p+++ + eFW+++v +++ e++g++ lsGW+taFcv++
  CDO71951.1  93 YFTYRIVIICGIPTITLLGTQSDWLSLLRRLDRLPTLGPEPAAWARMLRPVLRRFVEVFDNPEQP-DLEFWRSVVYRRQ-EMCGQDDLSGWLTAFCVWN 189
                 9**************************************************************99.9********6555.59***************** PP

     DUF4419 216 kdgkvleeekkeeeeeeseeee........................alvldgveypeidtddipsglasvpvkldedngkeyelelvaGsvGvkvssee 290
                 ++g +++ +  + ++ +++e +                            +  +++++d +d  +++++v+v +d dng + ++ ++aG+v+ kv ++e
  CDO71951.1 190 HNGVWKAGRLPDLPAMQDNEPAagnhekslekmdeksrssfilptsPQAAESRKINQFDESDARESYCEVDVIVD-DNGVRLNCNMIAGHVAGKVLKSE 287
                 *888887766665555444443677778888888888999***9986667888899******************9.999*****************999 PP

     DUF4419 291 e....dtlqpvsgWal 302
                 +    dtl p+++W++
  CDO71951.1 288 PdgkmDTLTPSAQWFI 303
                 89************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 1979.62
//
Query:       CDO71952.1  [L=543]
Description: hypothetical protein BN946_scf184940.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-78  263.2   0.1    2.2e-77  261.1   0.1    1.8  1  COesterase     Carboxylesterase family
    3.5e-11   43.4   0.1    9.4e-11   42.0   0.1    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold
    5.8e-05   22.7   0.5     0.0001   21.9   0.5    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.053   13.0   0.0        1.1    8.7   0.0    2.3  2  Peptidase_A4   Peptidase A4 family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.1   0.1     5e-81   2.2e-77      24     487 ..      34     508 ..      18     534 .. 0.83

  Alignments for each domain:
  == domain 1  score: 261.1 bits;  conditional E-value: 5e-81
                 EEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEE...ESSSSSTTSSEEEEEEE--STTTS- CS
  COesterase  24 evdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvyt...PkekkeakkklPVlVwihGggfqtg 119
                 +   F GiPYA +P    R++ + p  + ++++dA +++++C+qn              +sEDCL+Lnv+t   P + ++++    V+++ihGg++ ++
  CDO71952.1  34 TSFRFFGIPYADAP---VRWEYSTP-YTGNKTVDARSYGSVCIQNFLGATV--------GSEDCLFLNVWTpflPGR-NSTTPLKAVMFFIHGGAYIEE 119
                 6678**********...69***999.677889************9843332........89**********555443.44555559************* PP

                 BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEE CS
  COesterase 120 sase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsrglfkraI 216
                 s+s+  +dg +L+++g+v+vVtinYRl   GFl++++++++GN+G+ D+++AL+WV+++Ia+FGGd++r+t+fG+sAGa++ ++ll+sp + g +  aI
  CDO71952.1 120 SGSDpnFDGGSLVSRGDVVVVTINYRLSTIGFLALENRKTNGNYGFADMITALDWVRDHIAAFGGDKDRITVFGQSAGATATHALLASPKAIGKYAAAI 218
                 **9999********************************************************************************************* PP

                 EES--TTSTTTSBSH........HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC... CS
  COesterase 217 lqSGsalspwaiqkk........arkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdflpekPeellkseg... 304
                 +qS  a +++a+ ++         +  a+ + +++gc+++ + + +eclr  +a+ l++  +          +    vvdg++l+++   +  s g   
  CDO71952.1 219 VQSNLAGANVATPYSlyytipeeTKLLADPIIAEAGCNTTGT-DPLECLRAVDASVLINLPT----------IVNDLVVDGTYLTSSQVPINGS-Gpva 305
                 ***988888888888777776545556777889****76665.599***********98873..........567789*******766666666.4599 PP

                 CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH. CS
  COesterase 305 kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklha. 402
                 +v+l++Gv++d+g+ f ay                 ++l++ l+ +  +++ + + ++ e t    ++ + ++ + ++++++dv f++  ++t+ +   
  CDO71952.1 306 NVELMMGVMRDDGVAFTAYPNT--------------TNLTQALIDADLSPAVAGNPLFPEPT---GTNATLNVFNVTERVTSDVEFRCLDQATIYSGVt 387
                 *****************95333..............34444445554445566666666666...55666667778889999****9988888877664 PP

                 .HTT-SEEEEEEE--STTSSS...T.................TTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHHSSTTS...... CS
  COesterase 403 .srgspvYlYsfdyrnssskk...p.................kwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFaktgnPnk...... 474
                  +  ++v++Y+f+ + +  ++   p                 +    +h+ el yvfg   l+ +   ++d  ++++++++w++Fa+t nPn       
  CDO71952.1 388 hDLFKSVWFYEFNRSYQLLEYnpnPplceapvtsdhpfgdpdAEYFKCHAGELLYVFGSLNLPFR--DDKDLPFMQRIVDIWSSFARTYNPNPdskfla 484
                 477889******99998888886626777788999999999977778***********9888554..355***************************** PP

                 ...........TTSS----B.TTT CS
  COesterase 475 ...........eeeekWpkytkee 487
                            ++e kW+++tke+
  CDO71952.1 485 argftniaehlAKEGKWEPVTKEN 508
                 *********9999******97665 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   2.1e-14   9.4e-11       1      91 [.     108     207 ..     108     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 2.1e-14
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---......TTTS-T...THHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrl......APehpf...PaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaa 87 
                    ++++HGG+++ +s + ++    +l+++ ++vvv ++Yrl      A e++       + d+++al w++++ +++g d++ri+++G+SaG++ ++a
     CDO71952.1 108 MFFIHGGAYIEESGSDPNFDGGSLVSRGDVVVVTINYRLstigflALENRKtngNYGFADMITALDWVRDHIAAFGGDKDRITVFGQSAGATATHA 203
                    689***********************************73333336788762225689*************99*******************9999 PP

                    HHHH CS
  Abhydrolase_3  88 valr 91 
                    ++  
     CDO71952.1 204 LLAS 207
                    8765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.5   2.2e-08    0.0001      10      93 ..     132     218 ..     126     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.2e-08
                   HHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEE CS
  Peptidase_S9  10 ladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakeg...yvdserlaitGgSyGGyltgaaln..qrpdlFkaav 93 
                   ++  ++vvv +n+r s+  G    +  ++ +g++ f+D+i+a++++ ++      d++r+ ++G S+G + t a+l+  ++  +++aa+
    CDO71952.1 132 VSRGDVVVVTINYRLST-IGFLALE-NRKTNGNYGFADMITALDWVRDHIaafGGDKDRITVFGQSAGATATHALLAspKAIGKYAAAI 218
                   55567899999999999.5544443.5999****************666532267*******************999444444555555 PP

>> Peptidase_A4  Peptidase A4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00024       1.1      88     123 ..     125     161 ..     114     165 .. 0.85
   2 ?    2.1   0.0     0.025   1.1e+02      89     147 ..     165     221 ..     160     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00024
  Peptidase_A4  88 dfsg.lavsaGDsvtvtvtatsatsgtvtieNlstgq 123
                   +f+g   vs GD+v vt+++  +t g + +eN +t+ 
    CDO71952.1 125 NFDGgSLVSRGDVVVVTINYRLSTIGFLALENRKTNG 161
                   55665789*************************9975 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.025
  Peptidase_A4  89 fsglavsaGDsvtvtvtatsatsgtvtieNlstgqsvtktlsapssklcgqsAeWivEd 147
                   f++  ++a D+v+ ++ a + ++  +t+  +s g + t++l a++ k  g+ A+ iv++
    CDO71952.1 165 FAD-MITALDWVRDHIAAFGGDKDRITVFGQSAGATATHALLASP-KAIGKYAAAIVQS 221
                   555.57888**********************************99.8889999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.33s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 3180.17
//
Query:       CDO71953.1  [L=1111]
Description: hypothetical protein BN946_scf184940.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.8e-121  406.1   0.0      7e-61  206.4   0.0    2.7  2  p450         Cytochrome P450
  ------ inclusion threshold ------
       0.02   14.9   0.5        5.8    6.9   0.0    2.6  2  Prefoldin_2  Prefoldin subunit
       0.12   12.5   0.0         17    5.5   0.0    2.4  2  Imm39        Immunity protein 39
       0.16   12.0   0.6         24    5.1   0.0    2.8  2  HTH_16       Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.0   1.4e-61   6.2e-58      98     438 ..     155     529 ..     143     554 .. 0.85
   2 !  206.4   0.0   1.6e-64     7e-61      56     438 ..     667    1078 ..     661    1104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 1.4e-61
                 HHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.HHHHHHHHHHHHHHHH...CHHHHC CS
        p450  98 lRrfltptltsfgklsleelveeeaedlveklrkkagess.elditellskaaldvigsilFgarfdlledek.lselvkaveelsslls...kssvql 191
                  +r  +p++   +++ l+e++ + +++l + + + +     ++++  +lsk++ldvig   Fg  f  l+ e  ++el  a++  + + +   +    l
  CDO71953.1 155 EHRQQNPAFGPAQIRDLTEIFVQKSQELANIWSRATRDGPaRVNVNADLSKMTLDVIGLAGFGYDFHALNAEGkSNELNLAFRSFLANNArggSIIGYL 253
                 5556677888777779***************9877666666*************************987765444455555555443221000223445 PP

                 CCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC............SCSSCSHHHHHHHHC..TTCTCTSSSSHHHHHHHHHHHHHHHHH CS
        p450 192 lllfpllkylptkllrklkeavkklkdlldklieerretldsa............kksrrdfldalllak..kekkgesklsdeelaatvlellfaGvd 276
                    fp+lky+p+   r++++  k++  + ++l++ r++ l ++            + + rd+l +l++a   k+  + + lsde++  ++ ++l+aG++
  CDO71953.1 254 RGRFPILKYIPNARARRVEASAKVIRRVGRELVQTRKAALLREleekhvdglqrkDLQGRDLLTLLIKANmaKDVPDSQRLSDEDVIGQIPTFLIAGHE 352
                 57899*************************************9*********99866799*********9665555559******************** PP

                 HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET.........T.....EEE-TT- CS
        p450 277 TtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir.........g.....ylipkGt 361
                 Tts+ ++waLy L kn e+q+klreE+ +v  d  +pt+d+l+ lpyld+v++EtLRlh +v   l Re++kd vi+         g       + kG 
  CDO71953.1 353 TTSTSTTWALYALSKNTEAQKKLREELFTVETD--TPTMDELSALPYLDMVVRETLRLHAPVA-MLFREAKKDDVIPvsepfidryGkvqqeIRVAKGN 448
                 ******************************999..7***************************.888*****999964444443332444458899*** PP

                 EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 362 evivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                 +v++++ alhr+++++ +++ eF+peR+++  +   n  +     l+F  GpR+CiG r+   e k +l tlL+ Fe+el 
  CDO71953.1 449 KVMLPILALHRSKAIWgEDALEFKPERWEQPPEaiaNVPGVWGHLLAFIGGPRACIGYRFSLIETKAILFTLLRMFEFELA 529
                 *****************************9988877667788899*********************************973 PP

  == domain 2  score: 206.4 bits;  conditional E-value: 1.6e-64
                  HHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS.EEETHHHHHHHHHH CS
        p450   56 kevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess.elditellskaald 151 
                    vl+k+++   + + ++ l++++ p+  +gvlf +g+ ++k++  + p+   +    l+ ++ + a++l + + + +     ++d   +lsk+ald
  CDO71953.1  667 TDVLGKGTQILDAAYGDSRLRKRHIPSPSTGVLFVTGDAHRKQNPAFGPAQVRN----LTGIFLQKASELARIWSSVTRDGPaRVDANSDLSKMALD 759 
                  678999999999999999999********************9998888887755....9****************99888777************** PP

                  HHHHHHHSSHHHTTT.SSHHHHHHHHHHHHHH...HHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.......... CS
        p450  152 vigsilFgarfdlle.deklselvkaveelss...llskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa.......... 234 
                  vig   Fg  f  l+ d +++el  a++ ++     + ++ + l   fp+l+ +p+k  +++ +a k+++ +++ l+e r++ + ++          
  CDO71953.1  760 VIGLAGFGYDFHALNaDGQPNELNLAFRSIMGntaCMTSFAFYLGGRFPILRLVPNKGVKHMLDAAKVIHRVARVLVETRKAAVLKEmeksidglkr 856 
                  ***********97652667778888887776655555577889999***************************************999*******98 PP

                  .SCSSCSHHHHHHHHC..TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHH CS
        p450  235 .kksrrdfldalllak..kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavi 328 
                   + +  d+l +l++a   ++  + +klsde+++ ++ ++lfaG++T s++++w+++ L +n e+q+klreE+  v  d  +pt d+l+ lpyld+v+
  CDO71953.1  857 qDLEGQDLLTLLIKANmaEDVPDSQKLSDEDVMGQIPTFLFAGHETVSTAITWTFFALSRNTEAQKKLREELSAVETD--RPTADELSALPYLDMVV 951 
                  8557899999999999665555559**********************************************9999988..5**************** PP

                  HHHHHHSCSSTTEEEEESSSCEEET.........T.....EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEE CS
        p450  329 kEtLRlhpvvplllpRevtkdvvir.........g.....ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGa 407 
                  +EtLRlh++v   l Re++k+ vi+         g       i kG +v +++ alhr+++++ +++ eF+peR+ +  +   +  +     l+F  
  CDO71953.1  952 RETLRLHSPVA-MLFREAKKNDVIPlsepfidryGrvrqeIEIAKGNKVALPILALHRSKAIWgEDAMEFRPERWQQPPEaiaKVPGVWGHLLAFIG 1047
                  ***********.888*****7777533333333324444589**********************************9988655444556689***** PP

                  GGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450  408 GpRnCiGerlArmelklflatlLqnFevelq 438 
                  GpR+CiG r+A +e+k +l tl++ Fe+el 
  CDO71953.1 1048 GPRACIGYRFALLEIKAALFTLVRGFEFELA 1078
                  ****************************984 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0013       5.8      41      71 ..     271     301 ..     268     305 .. 0.92
   2 ?    5.3   0.1    0.0042        19      43      75 ..     823     855 ..     815     858 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
                  S-TT--EEEEETTEEEEE-HHHHHHHHHHHH CS
  Prefoldin_2  41 ldedtkvyklvGdvlvkqdkeevkeeLeerk 71 
                  ++ ++kv + vG+ lv++ k+ ++ eLee++
   CDO71953.1 271 VEASAKVIRRVGRELVQTRKAALLRELEEKH 301
                  67899***********************985 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0042
                  TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHH CS
  Prefoldin_2  43 edtkvyklvGdvlvkqdkeevkeeLeerketle 75 
                  + +kv   v +vlv++ k+ v++e e++++ l+
   CDO71953.1 823 DAAKVIHRVARVLVETRKAAVLKEMEKSIDGLK 855
                  66899**********************998876 PP

>> Imm39  Immunity protein 39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0097        44      49      80 ..     412     443 ..     391     449 .. 0.90
   2 ?    5.5   0.0    0.0038        17      49      81 ..     961     993 ..     937    1000 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0097
       Imm39  49 vsllilyGekdllipkyerinkkyselpveve 80 
                 v++l++  +kd++ip  e+   +y+++  e+ 
  CDO71953.1 412 VAMLFREAKKDDVIPVSEPFIDRYGKVQQEIR 443
                 89***********************9877765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0038
       Imm39  49 vsllilyGekdllipkyerinkkyselpvevel 81 
                 v++l++  +k+++ip  e+   +y+ +  e+e+
  CDO71953.1 961 VAMLFREAKKNDVIPLSEPFIDRYGRVRQEIEI 993
                 89************************9999987 PP

>> HTH_16  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.011        51      11      25 ..      93     107 ..      93     109 .. 0.92
   2 ?    5.1   0.0    0.0054        24      11      25 ..     642     656 ..     641     656 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
      HTH_16  11 DeeAieeiLkhYegy 25 
                 D  A++ iL hY++y
  CDO71953.1  93 DARALNHILTHYDDY 107
                 778**********99 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0054
      HTH_16  11 DeeAieeiLkhYegy 25 
                 D+ A++ iL hY++y
  CDO71953.1 642 DPRALNHILTHYDDY 656
                 899**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 6620.57
//
Query:       CDO71954.1  [L=170]
Description: hypothetical protein BN946_scf184940.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1204.04
//
Query:       CDO71955.1  [L=363]
Description: hypothetical protein BN946_scf184940.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-06   26.9   0.5        7.3    7.6   0.1    4.3  3  WD40         WD domain, G-beta repeat
    0.00037   20.7   0.0        1.1    9.7   0.0    3.2  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1   0.00081       7.3      12      38 .]     194     221 ..     175     221 .. 0.76
   2 !    7.5   0.0   0.00093       8.3       6      37 ..     230     263 ..     226     264 .. 0.68
   3 !    6.8   0.0    0.0015        14       1      28 [.     322     351 ..     322     353 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00081
                 SEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  12 svtslafspdgawl.asGsdDgtvriWd 38 
                 + ts++++  ++ l +++s D t+ +W+
  CDO71955.1 194 PLTSFSWNEKSPSLiVTSSIDTTCTVWN 221
                 4789987777777626999********8 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00093
                 EEESSSS.EEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40   6 tltGHss.vtslafspdgawla.sGsdDgtvriW 37 
                  l +H+  v+++a+ p ++ ++ s + Dg++r +
  CDO71955.1 230 QLIAHDReVYDVAWLPGSTDIFvSVGADGSLRAF 263
                 57799336****877777775414456***9965 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0015
                 TEEEEEEESS.SSEEEEE.EETTSSEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla.fspdgawlasG 28 
                 gq++ +l++H   v++l   s d+++la++
  CDO71955.1 322 GQPVMELKAHrAQVNALGwSSTDSQLLATA 351
                 7999******888****8445555555555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.16   1.5e+03      34      48 ..     107     121 ..      77     154 .. 0.72
   2 !    9.7   0.0   0.00012       1.1      32      89 ..     186     243 ..     172     276 .. 0.88
   3 !    6.9   0.0   0.00087       7.8      59      91 ..     309     342 ..     286     352 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
  ANAPC4_WD40  34 edkedsevrsLaWkp 48 
                  e++++   + L+W+p
   CDO71955.1 107 EAQHGYPATRLQWQP 121
                  334444445555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  32 leedkedsevrsLaWkpdgklLav.aysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++++++   +s++W+++   L v +  d+++ + ++ + + + +l +++ + v  + W
   CDO71955.1 186 VQNNNTGAPLTSFSWNEKSPSLIVtSSIDTTCTVWNIDTSTAITQLIAHDRE-VYDVAW 243
                  36789999********99876666156699****************999995.988888 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00087
  ANAPC4_WD40  59 dg.evrlldaes.gkvvhslsvksekavtclgWge 91 
                  dg ev++ld+ s g+ v +l++++ + v+ lgW++
   CDO71955.1 309 DGtEVQILDMRSpGQPVMELKAHRAQ-VNALGWSS 342
                  44355666554435556666666553.66666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2767.44
//
Query:       CDO71956.1  [L=105]
Description: hypothetical protein BN946_scf184940.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   46.1   0.8    5.3e-12   45.7   0.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.8     3e-16   5.3e-12      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO71956.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 823.26
//
Query:       CDO71957.1  [L=586]
Description: hypothetical protein BN946_scf184940.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-69  233.3   3.4    2.4e-69  233.3   3.4    2.3  2  Nucleos_tra2_C   Na+ dependent nucleoside transporter C-termi
      3e-21   75.8   5.8      3e-21   75.8   5.8    3.8  3  Nucleos_tra2_N   Na+ dependent nucleoside transporter N-termi
     0.0096   16.2   7.1     0.0096   16.2   7.1    3.4  3  Gate             Nucleoside recognition
  ------ inclusion threshold ------
       0.16   12.3   0.3       0.95    9.8   0.4    2.1  2  KCNQC3-Ank-G_bd  Ankyrin-G binding motif of KCNQ2-3


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.8     0.081   3.6e+02      57      88 ..     267     300 ..     256     321 .. 0.74
   2 !  233.3   3.4   5.4e-73   2.4e-69       2     207 .]     371     585 ..     370     585 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.081
                     HHHHHHHHHHHHHHHHHHH..HHHHHHHHT-TT- CS
  Nucleos_tra2_C  57 alniaamliafvalvalin..allgwlgsgleel 88 
                      +n +a +i f+a+v+++   ++++wl +g+ ++
      CDO71957.1 267 FVNTLASIIFFIAFVQMMYylGVMQWLIKGFAWF 300
                     57889999******99986224567776655444 PP

  == domain 2  score: 233.3 bits;  conditional E-value: 5.4e-73
                     HHHHHHHHHHHHHHHHHHHS---S-................---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..T-TT- CS
  Nucleos_tra2_C   2 llaAsvmsapaalaiskllvPeteesktkk......keekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgs..gleel 88 
                     l++Asvms+pa++aisk+ +Pe +e+ t++       +++++ +an+l+a+++gal gl +a +i+++++++v+lva+in+ll+w+g+  g++ l
      CDO71957.1 371 LVTASVMSIPASIAISKMRIPEVDEPVTRGhvtidrGDNDKNPPANALHAFSRGALFGLIVAGQILTNVLTVVSLVAMINGLLTWIGKgfGIHAL 465
                     89**********************999999999998677777889*****************************************998889*** PP

                     -HHHHHHHHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGS.SS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHH CS
  Nucleos_tra2_C  89 slelilgyvfaplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkk.kgelserseliatyaLcgFanfssigiqiGglgalaperrkdi 182
                     +l+l+l yvf+p++f++Gvp++++l+v++ll+tKlv+nefv y++L+++++  + ls+r+ +ia+yaLcgFan++s+giq+G+l+alap+r ++i
      CDO71957.1 466 TLQLVLRYVFYPVTFFIGVPRNEILRVAELLATKLVANEFVGYTDLHAITQsDNPLSDRAYTIASYALCGFANLGSLGIQVGVLSALAPSRARVI 560
                     ***********************************************99885788**************************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_C 183 aklglkallaGtlasllsAaiaGll 207
                     a+++++a+++G++++l  A iaG+l
      CDO71957.1 561 ARIAVSAMICGFISTLQAAGIAGML 585
                     ***********************97 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   3.6       1.3     6e+03       3      40 ..      82     119 ..      80     135 .. 0.67
   2 !   75.8   5.8   6.6e-25     3e-21       1      72 [.     186     257 ..     186     258 .. 0.98
   3 ?   -1.6   2.2      0.96   4.3e+03      33      63 ..     278     308 ..     264     313 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                     HHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N   3 llvllliawllSenrkainwrtVigglllQfvlAlfvl 40 
                     l++l+l  w+ S+  +a + r ++  +   f++ ++ +
      CDO71957.1  82 LAALILAWWVSSTVLEATRHRWIVQTVWAWFFIVVIAF 119
                     66777777777777788888888755555555444444 PP

  == domain 2  score: 75.8 bits;  conditional E-value: 6.6e-25
                     HHHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG CS
  Nucleos_tra2_N   1 lGllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvFG 72 
                     lGl+v+ +++w++S++r++i+w tVi+gl++Q ++A+fvlk +ag+++fk+++ l++++l++a aGa+F+F 
      CDO71957.1 186 LGLFVFQFCFWATSKHRSHIPWPTVIVGLFVQQAIAMFVLKSGAGFSIFKWIAYLASDFLAQALAGAEFFFD 257
                     7*********************************************************************96 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.96
                     HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N  33 fvlAlfvlktpagrdvfkalsdlvqalldfa 63 
                     +++  ++ ++++ + ++k+++ ++ ++++ +
      CDO71957.1 278 IAFVQMMYYLGVMQWLIKGFAWFFFKIMNIS 308
                     3344456778888888888888888888876 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.83   3.7e+03      46      46 ..     148     148 ..      77     191 .. 0.60
   2 !   16.2   7.1   2.1e-06    0.0096       5     107 ..     271     363 ..     267     366 .. 0.89
   3 ?    2.0   4.0     0.053   2.4e+02       5      54 ..     427     477 ..     425     582 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.83
        Gate  46 a 46 
                  
  CDO71957.1 148 R 148
                 1 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.1e-06
        Gate   5 gpiillasiliwflssssllgrigkllepv.faplg..qeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcva 100
                 +  i++++++++++++ ++++++ k ++++ f+ +     +   a++s + g++      + l ++y           ++++s+l + ++++++t++++
  CDO71957.1 271 LASIIFFIAFVQMMYYLGVMQWLIKGFAWFfFKIMNisGAEAVVAAASPFIGQG----ESACLVKPY---------VDYMTESELHLTMTSGFSTIAGS 356
                 5679**************************667799888888888888888888....777888899.........999******************** PP

        Gate 101 tlavivr 107
                 +l ++++
  CDO71957.1 357 VLSAYIG 363
                 **99986 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.053
        Gate   5 gpiillasiliwflssssllgrigkllepvfaplg.qeldwkatvslltgf 54 
                 +++i+++ il ++l+  sl+++i  ll+++ + +g + l+ +++   ++  
  CDO71957.1 427 FGLIVAGQILTNVLTVVSLVAMINGLLTWIGKGFGiHALTLQLVLRYVFYP 477
                 679***************************999999999988887777655 PP

>> KCNQC3-Ank-G_bd  Ankyrin-G binding motif of KCNQ2-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00021      0.95      21      81 ..       8      67 ..       3      72 .. 0.91
   2 ?   -1.1   0.0      0.52   2.4e+03      55      75 ..     307     327 ..     301     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
  KCNQC3-Ank-G_bd 21 silsvdheeLersfsGfsisqekedeelaalnaeaaageallarvrpylaeGesDtDsDlf 81
                     +++ v+h  L r  s  s s + e+ + ++ +ae++ ++     +r  l e e+D D    
       CDO71957.1  8 AMPEVQHTHLARKSSRTSGSDSIEKVD-PTNGAEVQVKDPEKGTTRDSLPEEETDEDVSTL 67
                     699***********************9.788999999999999************997665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.52
  KCNQC3-Ank-G_bd  55 aaageallarvrpylaeGesD 75 
                      ++ +ea++a + p++  Ges 
       CDO71957.1 307 ISGAEAVVAAASPFIGQGESA 327
                      566788999999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4066.95
//
Query:       CDO71958.1  [L=242]
Description: hypothetical protein BN946_scf184940.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1804.58
//
Query:       CDO71959.1  [L=267]
Description: hypothetical protein BN946_scf184940.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-30  105.7   0.2    3.2e-30  105.1   0.2    1.2  1  Ferritin_2  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.2   1.8e-34   3.2e-30       1     110 [.      24     131 ..      24     138 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 1.8e-34
  Ferritin_2   1 sdvdiLnfAlnlEyleaafYtaalegasldd..kalldaevrevaeeiakheeaHveflkaaleGaaavakptfdfafdpfadeksflalaavlEdvgv 97 
                 +d+d+L+fAl+lE le+afY+++l+++++++  +a+++++vr  + +i++he+aHv+fl++al Gaaa ++++++f   p +++++f al+ +lE vg 
  CDO71959.1  24 TDTDVLQFALTLENLENAFYSQGLAQYDAKAftDAGFPDWVRGRFVQIGEHEAAHVQFLNGAL-GAAATKPCQYNF---PHNSPATFAALSLALESVGD 118
                 69***********************999888********************************.************...******************** PP

  Ferritin_2  98 sAYlgaapllsnk 110
                 +AYlgaa lls+k
  CDO71959.1 119 AAYLGAAGLLSDK 131
                 **********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1919.58
//
Query:       CDO71960.1  [L=602]
Description: hypothetical protein BN946_scf184940.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-80  271.6  17.5    6.5e-79  265.9  15.8    2.0  2  Sugar_tr  Sugar (and other) transporter
    3.4e-17   62.4  29.9    8.1e-17   61.2  29.9    1.5  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
          1    9.6   4.1        3.2    8.0   4.1    1.8  1  DUF4293   Domain of unknown function (DUF4293)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.9  15.8   1.1e-82   6.5e-79       3     394 ..     112     508 ..     110     510 .. 0.92
   2 !    5.5   0.0    0.0011       6.5     433     452 .]     529     548 ..     525     548 .. 0.92

  Alignments for each domain:
  == domain 1  score: 265.9 bits;  conditional E-value: 1.1e-82
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHH.HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGa.iiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 ++ +l+  ++g d  vi+++  +   +    ++  +ss ++   l+gl+ ++ ++ + +iG+ ++ ++ ++fGR+ ++ i+a++++i  + q++++   
  CDO71960.1 112 ILCSLAAAVQGMDESVINGANLFFPDQLGIPQTGPNSSRNQ--WLLGLVNGAPYLCCgVIGCWLSAPMNKYFGRRGTIFISAFVSFITCIWQGLTN--- 205
                 55677778888888888888888887888888888887875..88999998877665499************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilllflPES 194
                 +++ l+++R+++G+g+G  s +vP+y++E +p+++Rgalv+++q++++fGi++++++ l++ ++ +        wr++lg++ vpal+++  ++f+PES
  CDO71960.1 206 TWWHLFIARFILGFGIGPKSSTVPVYAAECTPPAIRGALVMMWQMWTAFGIMLGTVMSLAFYHVPDthnihGLNWRLMLGSAGVPALIIMTQVYFCPES 304
                 9************************************************************9888888899899************************* PP

                 HHHHHHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH. CS
    Sugar_tr 195 Prylvekgkeeeakevlaklrge.edadrelaeekdsleaeqeee..kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks. 289
                 Pr+l+ kg++++a  +l +lr++  +a r+l  +   leae e +   +   el++   +r+++l    ++++qq++G+n+i yys++if ++ +s+  
  CDO71960.1 305 PRWLMGKGRYDKAYDSLLRLRKSsLQAARDLYYIHVLLEAENEIKggRNLFLELFTVPRNRRATLASTIVMFMQQFCGVNVIAYYSSNIFAQANFSNIq 403
                 *******************99996566667777777777776666668888888888889*************************************99 PP

                 .HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHH CS
    Sugar_tr 290 .llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRska 387
                  l+++ ++g++n+v+ f a++++d fGRR+lll+ +  ma+++++ g  a+ +++ ska  +++  +i+lf++++++g gpvp+ +++E fp+ +R+++
  CDO71960.1 404 aLIASWGFGMLNWVFAFPAVWTIDTFGRRKLLLTTFPLMALFLLLTG-FAFYIPEDSKARIGIVALGIYLFTMAYSPGEGPVPFTYSAEAFPLYIRDVG 501
                 9*********************************************9.888888888999999999********************************* PP

                 HHHHHHH CS
    Sugar_tr 388 laiavav 394
                 +  a+av
  CDO71960.1 502 MGWATAV 508
                 ****986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0011
                 HHHHS--STT--CCCCGGGT CS
    Sugar_tr 433 vfffvpetkgrtleeieelf 452
                 ++ff+petk ++lee++++f
  CDO71960.1 529 ILFFLPETKALSLEELDQVF 548
                 79***************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2  29.9   1.3e-20   8.1e-17       2     343 ..     115     507 ..     114     513 .. 0.78

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.3e-20
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse.........igllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll.fasslwlll 89 
                 +laa++ +++ s+++ a   +  ++lgi  +          +gl+ ++ +l ++v    l +++   fGrr ++++++++++++ +++  +++++w l+
  CDO71960.1 115 SLAAAVQGMDESVINGANL-FFPDQLGIPQTGpnssrnqwlLGLVNGAPYLCCGVIGCWLsAPMNKYFGRRGTIFISAFVSFIT-CIWQgLTNTWWHLF 211
                 5789999999999999998.88899994444455555446677777777777766666664888888*****888888888888.23334546666*** PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperk 180
                 ++r++ G+g g   +++ +++a+ +p+  rg  + ++++ +++G++lg + + ++++           Wr++   +++ +l+ +     ++++++++r+
  CDO71960.1 212 IARFILGFGIGPKSSTVPVYAAECTPPAIRGALVMMWQMWTAFGIMLGTVMSLAFYHVPDthnihglnWRLMLGSAGVPALIIMT---QVYFCPESPRW 307
                 ********************************************************6666**********************966...56668888888 PP

       MFS_1 181 rkspkeee...............................kgtgpaplvp.awkallkdpvlw.illialllfffgfsglltllplylqevlglsgllla 246
                    + +                                 + +g+++l+  +++  ++++  + + ++++   f+g++ + +++  +   + ++s+ ++a
  CDO71960.1 308 LMGKGRYDkaydsllrlrksslqaardlyyihvlleaenEIKGGRNLFLeLFTVPRNRRATLaSTIVMFMQQFCGVNVIAYYSSNI-FAQANFSN-IQA 404
                 87777766789999999999999999999999988888844444444444677777777666777777777788888877777775.899****4.888 PP

       MFS_1 247 glllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfv.....fpsllalasdlappeeagtasg 339
                 ++++  +++++ ++a+ a + +d +grr+ ll +++l++l++l+  ++  + + + + +++v +G+  + ++      p  +++ ++ +p   +   +g
  CDO71960.1 405 LIASWGFGMLNWVFAFPAVWTIDTFGRRKLLLTTFPLMALFLLLTGFAFYIPEDSKARIGIVALGIyLFTMAyspgeGPVPFTYSAEAFPLYIRDVGMG 503
                 8889999999999999***************************99999999555555554444444443333333367777777777777777777777 PP

       MFS_1 340 lfnt 343
                 +++ 
  CDO71960.1 504 WATA 507
                 7665 PP

>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1   0.00053       3.2      16     101 ..     372     455 ..     367     477 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00053
     DUF4293  16 maaflflplasivtedel.lsfyalgvstaeaetsvnvsvwvlvilllliailaliaIflyknRklQlrlclinllllvllyvllal 101
                 ++++++ ++      + + +   ++  + + +++++   +w++ +l+ + a+ a+ +I ++ +Rkl l+   + +l+l+l+++++ +
  CDO71960.1 372 TIVMFMQQFCG---VNVIaYYSSNIFAQANFSNIQALIASWGFGMLNWVFAFPAVWTIDTFGRRKLLLTTFPLMALFLLLTGFAFYI 455
                 33333222222...222234445555556667788899****************************999885555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4263.09
//
Query:       CDO71961.1  [L=108]
Description: hypothetical protein BN946_scf184940.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 769.12
//
Query:       CDO71962.1  [L=161]
Description: hypothetical protein BN946_scf184940.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1232.74
//
Query:       CDO71963.1  [L=280]
Description: hypothetical protein BN946_scf184940.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.6   0.1       0.17   12.2   0.0    2.4  3  DUF3446   Early growth response N-terminal domain
      0.017   15.1   1.9      0.017   15.1   1.9    1.9  2  Apq12     Nuclear pore assembly and biogenesis
       0.35    9.1   3.3       0.51    8.6   3.3    1.2  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.2   1.3e+04      18      28 ..      16      26 ..      13      40 .. 0.61
   2 ?   12.2   0.0   2.8e-05      0.17      20      67 ..     134     185 ..     119     189 .. 0.80
   3 ?    0.5   0.0      0.13   7.8e+02      14      45 ..     236     269 ..     230     279 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
     DUF3446 18 eellslvsglv 28
                ++l+s +s ++
  CDO71963.1 16 DPLFSFLSSIL 26
                45666666444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.8e-05
     DUF3446  20 llslvs.glvgvan..ppsspsssssssssssssssspsl.scsvaaqqsse 67 
                 lls++   l+g+++     + ss s+  s + +s+++p++ +++ ++++++ 
  CDO71963.1 134 LLSIFGnALLGMFSqdGQGTQSSRSTRRSRTKASAAGPKTrAQTRKQKEQAK 185
                 899**98999**995445578889999***********98677776666665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.13
     DUF3446  14 slwaeellslvs..glvgvanppsspssssssss 45 
                 + w e + ++v   glvg + ++s+   +s   s
  CDO71963.1 236 TGWWETVKNVVEgsGLVGSSRQASAEDAQSQRRS 269
                 5677788888854488888666655444444444 PP

>> Apq12  Nuclear pore assembly and biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.27   1.6e+03      25      38 ..      42      55 ..      30      57 .. 0.54
   2 ?   15.1   1.9   2.8e-06     0.017       7      48 ..      66     107 ..      62     109 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
       Apq12 25 rRvvlfwvrllvrl 38
                  + + +vr+++ l
  CDO71963.1 42 LTLLAAFVRFVLTL 55
                34444455555444 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.8e-06
       Apq12   7 illlllilyvslkildrarRvvlfwvrllvrlvfwlavvlvg 48 
                 il  l++l   +  l   +R+  +++r++++ v w+++++  
  CDO71963.1  66 ILPPLITLLAAYLALVSFYRTTGWMIRTVFWFVKWGSILGTL 107
                 556678888888888888888888888899999999888765 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.3   8.6e-05      0.51      80     155 ..      18     104 ..       4     117 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 8.6e-05
     DUF2070  80 livviisllaillsallqalvllalvlslalvfalrllvlvavsdesll.kavlpaliqpllailllvly..............fspesfl 155
                 l++++ s+l+  ++    a+v   +  sl+l +a++ +vl++v  es+  + +lp li++l+a+l+lv +              +++ s+l
  CDO71963.1  18 LFSFLSSILPPQVY----AIVESLISHSLTLLAAFVRFVLTLVNAESWDaQKILPPLITLLAAYLALVSFyrttgwmirtvfwfVKWGSIL 104
                 45555566666655....5667777778888888888888888888876156789999999999999988766666665555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2013.49
//
Query:       CDO71964.1  [L=135]
Description: hypothetical protein BN946_scf184940.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-41  138.8   0.2    8.6e-41  138.5   0.2    1.1  1  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.2   4.8e-45   8.6e-41       2      99 ..      13     110 ..      12     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 4.8e-45
         MPC   2 lkrflnsetgkktvhFWaPvlkwglviaglsDlkrpaekiSltqnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskkdek 99 
                 ++ f+n+++g+ktv+FWaP +kw+lv agl+Dl+rpaek+S++qnlaL atg iw+ryslvi+P Ny laavnf+++++gl q+ Ri  y++++kd  
  CDO71964.1  13 FQAFMNHPAGPKTVFFWAPLMKWCLVAAGLKDLSRPAEKLSVSQNLALAATGFIWVRYSLVITPINYSLAAVNFFVGSTGLGQLGRIWYYQKTHKDPV 110
                 99*****************************************************************************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1024.27
//
Query:       CDO71965.1  [L=651]
Description: hypothetical protein BN946_scf184940.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-50  170.0  23.4      9e-50  169.5  23.4    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
        2.1    8.3   5.6       0.39   10.7   0.3    2.4  2  Phage_holin_8   Putative phage holin


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5  23.4     1e-53     9e-50       4     333 ..       7     356 ..       2     364 .. 0.94

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 1e-53
                     HHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS...........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   4 lillallvgllarrlklpeivgliiaGlllGpsglglieps......eedlevlselglilllFlaGleldlrelrknlksilllallgvlitvv 92 
                     +++ +++++l+ +++++ e+v+  ++G+++Gp++ ++++p       ++++ ++ ++ l   lF++G+el+ ++l  + k  l++ l+ +++ ++
      CDO71965.1   7 VVAFSVVSLLVKEKFYINEVVLGTACGVIFGPYCANIFNPRswdgniNTITLEVTRITLAAGLFAIGVELPQSYLADHAKGLLVMVLPTMAFGWI 101
                     33335555556**************************99999***************************************************** PP

                     HHHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC....CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHH CS
  Na_H_Exchanger  93 liGlllylllilgiplleallfgailsatdpvvvlailk...eegrvperlgtlllgesvlnDavavvllavllalakeeaggetsllllllifl 184
                     ++++++ + ++++++++ +++++a+l++tdp++ +ai+      ++vp +l+++l +es  nD++a ++l++ + l +e   +++   ++l+  l
      CDO71965.1 102 VVAVVIFA-VFPPLNFISSMVISACLTPTDPIISAAIVGgkfATKHVPINLRRILAAESAANDGLAYPFLSLSIYLTTEASRRVAIGEWFLIGWL 195
                     *9999887.79****************************99999********************************999899999999******* PP

                     HHHHHHHHHHHHHHHHHHHHHHHS....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHH.HHHHHHHHHHHHH CS
  Na_H_Exchanger 185 vvavgglllglvigwllrlitrft....dddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklsek.lesfreglfnplf 273
                     + +++g ++g+v+g  ++ + +f+      dre++v+ +l+lal++ +++  lg +++l+af++G ++s ++ f+++++ + ++s+++ ++n   
      CDO71965.1 196 YQVILGTVIGAVLGIAFSHLMKFShrkgFIDRESYVAQYLALALFTIGVTRTLGSDDLLAAFACGSAISwDGYFNTQTEDEvFSSVIDLVLNCGC 290
                     **************99999999999999*****************************************88888888888899************ PP

                     HHHHHHHSXHHHHHX...XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX..SSXHHHHHHCC.CCSS CS
  Na_H_Exchanger 274 FvlvGlsldlkvlnn...hlsvlilvllilvaillgrilavflllrll..glslrealiig.fggl 333
                     F+++G+ +++ ++n    ++  ++lv+l + +++l+r+++ +ll +++  + s++eal+ g f gl
      CDO71965.1 291 FIYIGAWMPFDMFNAtelGITPWRLVVLFVSVLFLRRFPPLLLLYKWVpeITSWKEALFSGhFDGL 356
                     *********99997799*******************************999********9977776 PP

>> Phage_holin_8  Putative phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.9      0.24   2.1e+03      25      37 ..      28      40 ..       3     115 .. 0.59
   2 ?   10.7   0.3   4.3e-05      0.39      24      94 ..     191     258 ..     176     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.24
  Phage_holin_8 25 pgidadvvlGAfa 37
                    g+  +v++G ++
     CDO71965.1 28 LGTACGVIFGPYC 40
                   3444444444444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.3e-05
  Phage_holin_8  24 lpgidadvvlGAfaGavlfVvsakdltlltrlayf.lvSfiaGvlaaglaaaklatllpatdrvldalgAlv 94 
                    l g  ++v+lG  +Gavl +++++ +++ +r +++   S++a +la  l+   ++++l+      d l+A+ 
     CDO71965.1 191 LIGWLYQVILGTVIGAVLGIAFSHLMKFSHRKGFIdRESYVAQYLALALFTIGVTRTLGS----DDLLAAFA 258
                    5677799***************************9457********99999999999988....56666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4808.52
//
Query:       CDO71966.1  [L=576]
Description: hypothetical protein BN946_scf184940.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.029   14.6   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      0.027   14.7   1.8      0.061   13.5   0.5    2.1  2  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.2e-06     0.029       2      69 ..     116     191 ..     116     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.2e-06
                    EE---SS-SS-GGG---EEEEETT.EEEEE.....EEEEEEETTTT..-SEEEEEEE.TS-------EEEEEEE... CS
  Acyl-CoA_dh_M   2 falTEpqaGsdvasvkttaaerdggeyvln.....GeKiwitnaai..atlalvlar.tekpdrarglslflvp.rd 69 
                    +++TE ++G d+ +++tta+ +  g+++ln      +K +   ++     +a+v+a+   + + +rg++ f+vp +d
     CDO71966.1 116 YMMTELGHGLDIGNIETTATMTPSGDFILNsptpsAAKFMPPTVPAglPCVAVVFAKlIVNGE-DRGHRPFVVPlND 191
                    589****************888888*****888877888877766664666677777644444.7888888888433 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   6.8e-06     0.061      42     136 ..     286     384 ..     247     386 .. 0.84
   2 ?   -1.2   0.0      0.23   2.1e+03      13      43 ..     495     525 ..     490     534 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.8e-06
                    -CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------....HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHH CS
  Acyl-CoA_dh_1  42 afgkplidhqlvreklaemaaeleaarllvyraaealdagkpd....raeasmaKlfaselaqevadlamqllGgaGyleeypverlyrdarvlri 133
                    +  +p++ +   +  + + aa + ++++l + a+e++ +   d       a++ K +  ++ q++a    + +G++G+ +++++  l++++r   i
     CDO71966.1 286 DRRTPILTFRTQQAPILNAAASAYVMQALQRWAIEKFCDSSLDgrvrHGIAAIFKGVMVQHSQQAALGVSERCGAQGLFAHNQMTCLHNEMRGIAI 381
                    4458999999*************************998888888887888899******************************************* PP

                    SSS CS
  Acyl-CoA_dh_1 134 geG 136
                    +eG
     CDO71966.1 382 AEG 384
                    **9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.23
                    -S-----..-SHHHHHHHHHHHHHHHTSB-C CS
  Acyl-CoA_dh_1  13 heRlavaaaalglarraleealeyarrrkaf 43 
                     +R+a +a+  +++ ++l  + e++++ + f
     CDO71966.1 495 LGRAAQFAMETRAMDAVLPLLGELVKEMDVF 525
                    5899999999999999999999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4074.89
//
Query:       CDO71967.1  [L=242]
Description: hypothetical protein BN946_scf184943.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-74  248.7   0.0    9.5e-74  248.5   0.0    1.0  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
       0.11   12.5   0.0         11    6.1   0.0    2.4  2  DUF1382   Protein of unknown function (DUF1382)


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.0   1.1e-77   9.5e-74       1     212 [.      31     242 .]      31     242 .] 0.98

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 1.1e-77
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweqq 99 
                 F+++++Llk+iD++p+gd++w  +++++ g+++ ++p+w+++ey l++rd+++v++++ g+ df+++ +++P+r+y+  ++g+rv+s++ +g+waw+q+
  CDO71967.1  31 FASHRHLLKAIDAIPHGDIQWDAFSLRYGGPITPDAPRWKRQEYFLYCRDSWRVVENMAGSADFQGSWHVRPYRQYD--ENGTRVFSDLFSGHWAWKQA 127
                 99***************************************************************************..689***************** PP

     Plavaka 100 ..ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipkl.kkikkskefrklfkrqlfHaclarilepL 194
                   i+++p t+ga++ p+ ++ DKTt sv+tgn+e++PvY   Gn+++e+rr ++r+avv++++Lpipk+ +++++++efr+ fk+ql+H++l+ i+epL
  CDO71967.1 128 dvIAQDPaTHGAMFTPICIAADKTTASVATGNQEFHPVYAMSGNVTNEMRR-SHREAVVPIGFLPIPKAeEEYANDEEFRR-FKKQLYHTALRLIFEPL 224
                 *9888888*******************************************.*****************9999********.***************** PP

     Plavaka 195 keagkkgvvmtcadghvr 212
                 +++++ ++v++c+dgh+r
  CDO71967.1 225 RPGMTVPQVIQCPDGHYR 242
                 ****************98 PP

>> DUF1382  Protein of unknown function (DUF1382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0064        58      20      38 ..     135     153 ..     130     160 .. 0.83
   2 ?    6.1   0.0    0.0012        11      17      44 ..     180     212 ..     171     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0064
     DUF1382  20 AsiGIrFVPiPvatdeefq 38 
                 A  G  F Pi +a+d+   
  CDO71967.1 135 ATHGAMFTPICIAADKTTA 153
                 67899**********9765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0012
     DUF1382  17 HalAsiGIrFVPiPva.....tdeefqaLaael 44 
                 H  A + I F PiP a      deef+  +++l
  CDO71967.1 180 HREAVVPIGFLPIPKAeeeyaNDEEFRRFKKQL 212
                 77788999******7611111556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1709.52
//
Query:       CDO71968.1  [L=222]
Description: hypothetical protein BN946_scf184943.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1645.92
//
Query:       CDO71969.1  [L=593]
Description: hypothetical protein BN946_scf184943.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.8e-102  341.2   0.1   7.6e-102  340.8   0.1    1.1  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.8   0.1  4.3e-106  7.6e-102      68     323 ..       1     252 [.       1     253 [. 0.96

  Alignments for each domain:
  == domain 1  score: 340.8 bits;  conditional E-value: 4.3e-106
     Plavaka  68 ldyaPereytdekkgervysemmtgdwaweqqieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklk 166
                 ++y+Pe+ +++++ +  +++em+tg+w+we q  ++ ++gat++pvilssDKT+ls f+g+k+a+PvYlsiGni k++rr++s++a++l++y+p++kl+
  CDO71969.1   1 MKYTPEKLFQNADGTGPIFDEMWTGEWWWERQ--NTLPSGATIAPVILSSDKTQLSRFSGDKQAWPVYLSIGNIAKTIRRQPSKHATILIGYIPVTKLE 97 
                 79********8844489***************..44479************************************************************ PP

     Plavaka 167 kikkskefrklfkrqlfHaclarilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetle 265
                 ++  + ++r++  +++fH+c++ ilepL +agk+g++mtc dg vr+v+pi+aay+aD+pEq+lv+++ ++ Cpkc a+++elgd+  s +++++ + +
  CDO71969.1  98 CF--TRKTRSVEGYHVFHECMRSILEPLVAAGKSGIEMTCTDGGVRWVHPIVAAYVADHPEQCLVSGCQENFCPKCCAHSSELGDPVYSVMKDQTVIWD 194
                 **..8999999**************************************************************************97779********* PP

     Plavaka 266 lleeaade.lkklwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlvkW 323
                 +++eaad+  + ++k+ gl+  i+pFw++lp++di++++t DlLHql+kg+fkdH v+W
  CDO71969.1 195 AIKEAADGvDTVELKSLGLR-LIDPFWRELPHCDIFSCITLDLLHQLHKGIFKDHTVAW 252
                 *****99977779******9.578*********************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3979.50
//
Query:       CDO71970.1  [L=243]
Description: hypothetical protein BN946_scf184943.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1730.92
//
Query:       CDO71971.1  [L=127]
Description: hypothetical protein BN946_scf184943.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   23.9   0.0    6.9e-05   22.7   0.0    1.5  2  DEAD       DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.013   14.8   0.0    1.1  1  SecA_DEAD  SecA DEAD-like domain
       0.11   12.7   1.9       0.15   12.4   1.9    1.2  1  THOC7      Tho complex subunit 7


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.43   2.6e+03     113     126 ..      39      52 ..      21      60 .. 0.49
   2 !   22.7   0.0   1.1e-08   6.9e-05       3      65 ..      67     124 ..      65     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.43
                 HCTSSHCTTEEEEE CS
                 xxxxxxxxxxxxxx RF
        DEAD 113 stgklnlsqvrflV 126
                 +++k +    r + 
  CDO71971.1  39 KKKKYDSAATRQIM 52 
                 22233333334444 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtln 65 
                  Q +  +++l g d    a TG GKTl f++p+++ +     ++g+ ++iv+P+ +L  ++++
  CDO71971.1  67 EQLNLAECMLLGLDATSIAGTGWGKTLPFVLPLFSPL-----SRGKIMIIVSPLNSLEADQVR 124
                 5777778888899999******************888.....678899*********888765 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.2e-06     0.013      31     124 ..      19     112 ..       9     120 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  31 kalsdeeLrakteelkerlaegealdellpeafalvreaakrvlgmrhydvQliGglvl..hegkiaemkTGEGKtlvatlpaylnaltgkgvhvv 124
                 +a   e+L a  +e +++++++++ d++ ++   ++ + +k+ +g+++y  Ql  +  +     + +   TG GKtl  +lp++     gk + +v
  CDO71971.1  19 HAEAGEHLYALLDEAQAEAKKKKKYDSAATRQ--IMLDECKKRMGLTPYPEQLNLAECMllGLDATSIAGTGWGKTLPFVLPLFSPLSRGKIMIIV 112
                 55566778888888888888888888877655..4557788889********765544411334455557************99876667666665 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.9   2.5e-05      0.15      80     116 ..      12      48 ..       7      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
       THOC7  80 ieseieavreeieelkaqLeearatranrkeydelae 116
                 + ++++a  e  e l a L+ea+a+ + +k+yd  a+
  CDO71971.1  12 LAAQAAAHAEAGEHLYALLDEAQAEAKKKKKYDSAAT 48 
                 55666666677799*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1003.05
//
Query:       CDO71972.1  [L=298]
Description: hypothetical protein BN946_scf184943.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2243.69
//
Query:       CDO71973.1  [L=915]
Description: hypothetical protein BN946_scf184943.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-39  135.2   0.0    4.1e-39  134.4   0.0    1.3  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
      0.075   13.0   1.1       0.17   11.9   1.1    1.5  1  FlxA      FlxA-like protein
      0.087   12.7   0.5       0.22   11.4   0.5    1.7  1  UCH_C     Ubiquitin carboxyl-terminal hydrolases


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   6.8e-43   4.1e-39       6     209 ..     323     539 ..     315     569 .. 0.92

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 6.8e-43
                 .S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET... CS
       RVT_1   6 pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptkl 101
                   +yRpi +l++dyk+l k++a  L  ++ +++++ q gf pgr + d++   +++   +++k  +  ++ lD +ka+d++ ++ l+r l++f++p+ +
  CDO71973.1 323 VVNYRPITVLNTDYKLLTKIMAVKLAAAAPNIVHPAQAGFVPGRKLRDQTqlaRMMMLWAEAKEVNGAIVALDQEKAYDKIAHDYLWRVLERFGIPELF 421
                 679************************************************885555555567777999****************************** PP

                 ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T................TEEECTTEEEEEESSHHHHHHHHHHHHHH CS
       RVT_1 102 inliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra..........kgvtllrYaDDililskskeelqelleaveew 190
                 + ++k +++++++sv vng  s+++++++g++qG +lS l f l++++l+ ++rk            + ++ +++aDD++ + ++ +++  l  ++ +w
  CDO71973.1 422 VTTVKCLYANAETSVMVNGAMSETYKVYRGVRQGDPLSCLFFDLAIEPLSAMIRKSNlkgfklpghlEALKATLFADDTTTYLTEDDNFADLQLILNTW 520
                 ********************99*********************************99****************************************** PP

                 HHHTT--BEGGG-EEE... CS
       RVT_1 191 lkesglkinpeKtklvlft 209
                 ++ ++ k+n +Kt+++ ++
  CDO71973.1 521 CSAAKAKFNISKTEIIPIG 539
                 **************99666 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.1   2.9e-05      0.17      21      76 ..      84     138 ..      77     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
        FlxA  21 sLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaeka 76 
                 +L  +i +l+  Lk+l e+ el++  k + ++ + +QI +lqa  +q+q+q ++ a
  CDO71973.1  84 KLISEIHELEAALKSLRENCELDDRLKANEINVLTSQIRDLQAK-RQKQRQGNSRA 138
                 67778999999999999998888887777777777777777776.56666655544 PP

>> UCH_C  Ubiquitin carboxyl-terminal hydrolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   3.7e-05      0.22       1      27 [.     114     140 ..     114     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
       UCH_C   1 iaeleakLeeEeeKrerwkeENaRRrH 27 
                 i+ l++++++ ++Kr+++++ N+R +H
  CDO71973.1 114 INVLTSQIRDLQAKRQKQRQGNSRAKH 140
                 67899*******************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 6922.71
//
Query:       CDO71974.1  [L=182]
Description: hypothetical protein BN946_scf184943.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.019   15.3   4.5      0.025   14.9   4.5    1.4  1  Mitoc_mL59    Mitochondrial ribosomal protein mL59
       0.12   11.4   8.5       0.14   11.1   8.5    1.1  1  DUF5427       Family of unknown function (DUF5427)
        3.6    7.4  17.6        5.1    6.9  17.6    1.2  1  eIF3_subunit  Translation initiation factor eIF3 subunit
        3.8    6.9  11.2        4.8    6.5  11.2    1.1  1  DUF4746       Domain of unknown function (DUF4746)
        6.6    7.2  11.1        4.1    7.9   9.4    1.5  2  Usp           Universal stress protein family
        8.5    5.9  25.4         13    5.3  25.4    1.3  1  DDRGK         DDRGK domain


Domain annotation for each model (and alignments):
>> Mitoc_mL59  Mitochondrial ribosomal protein mL59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   4.5   8.4e-06     0.025      47     117 ..     100     165 ..      26     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.4e-06
  Mitoc_mL59  47 lRrqaeLvKaAkksgveellPpgpKstkfkeeraverglrvkgtagkkkmfkGhkwERtkeerlekrrkal 117
                  R  a+ +K  ++ + e+ lP  + +++++e++++er++r++++       k  + ER+ke r+++r+++ 
  CDO71974.1 100 DRHGADVLKVLHNLDQEHTLPRIEETRAKAEATMAEREEREREH-----AEKVAEREREKEVREHERAERA 165
                 59999****************88888888888888888877766.....3444555555555555554332 PP

>> DUF5427  Family of unknown function (DUF5427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.5   4.7e-05      0.14      33     114 ..     103     178 ..      84     182 .] 0.50

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
     DUF5427  33 eediLaeLeeLakkesrpaTPrvksnkskkaspkkkksaeepakeekkkeeessedkrksvestrsleasetpseeeseeqe 114
                   d+L+ L +L ++    + Pr+++++ +ka+++ ++++e++ ++++k +e + e++    e +r+ +a+e+++e e+e+++
  CDO71974.1 103 GADVLKVLHNLDQE---HTLPRIEETR-AKAEATMAEREEREREHAEKVAEREREKE--VREHERAERAAEKAAEREREKKA 178
                 349********993...355****993.34333333333333333333333333322..22233322222222222222221 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  17.6    0.0017       5.1      33     111 ..     109     181 ..      88     182 .] 0.65

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
  eIF3_subunit  33 vkdswdaeeeeeeekekakkaaeakakaakakkkkskkqkiaekeerrkaeeeeaeeeeeleeedeaarkerlrkaeee 111
                   v+ + d+e        ++++a+++++ a+  +++ + ++k+ae+e    +e+e  e e ++ ++++aa++er++ka++ 
    CDO71974.1 109 VLHNLDQEHTLPR--IEETRAKAEATMAEREEREREHAEKVAERE----REKEVREHERAERAAEKAAEREREKKAKQA 181
                   5555555444443..333333333333788888888899999998....333344566667777788889999988765 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.2    0.0016       4.8      48     114 ..     113     175 ..      99     182 .] 0.54

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0016
     DUF4746  48 neeekvlPplieplevkveveeeeelveevsseeetlekqekekektkakeaeltade.paeeeeaee 114
                  ++e++lP++ e+ + k e++      e +++e+e+ ek+++++ +++  e+e +  + ++++e + e
  CDO71974.1 113 LDQEHTLPRI-EETRAKAEATMA----EREEREREHAEKVAEREREKEVREHERAERAaEKAAERERE 175
                 589999*999.777777766655....44555555555555555555544444443221111111111 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.1   9.3e+03      40      66 ..      22      48 ..      21      52 .. 0.60
   2 ?    7.9   9.4    0.0014       4.1      31     104 ..     105     178 ..      92     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.1
                ESSHCCCCCCCHHHHHHHHHHHHHHHH CS
         Usp 40 dprasgavsdadeeaeeeeleleeael 66
                dp++ + + ++ +++++ e e+++++l
  CDO71974.1 22 DPFSLENWRAYTRASRTGEDEEKARTL 48
                566666666666666666666666554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
                 SEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTS CS
         Usp  31 aelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeeda 104
                 + l +lh +d +   ++ ++ ++ +e+  +++e+++++ a+k a+++++++v+ + +   +ae+ +e ++e++a
  CDO71974.1 105 DVLKVLHNLDQEHTLPRIEETRAKAEATMAEREEREREHAEKVAEREREKEVREHERAERAAEKAAEREREKKA 178
                 3578999999999999999999999999999999999999*************************999999887 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  25.4    0.0044        13      15      71 ..     123     179 ..     112     182 .] 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0044
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK  15 ekkrqqreaeeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerke 71 
                 e++r++ ea ++ereer+++++++++er+ ++e +e++++++++e++ ++e +++ +
  CDO71974.1 123 EETRAKAEATMAEREEREREHAEKVAEREREKEVREHERAERAAEKAAEREREKKAK 179
                 899************************999988888877777666555444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2085  (0.116292); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1288.62
//
Query:       CDO71975.1  [L=691]
Description: hypothetical protein BN946_scf184943.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4670.31
//
Query:       CDO71976.1  [L=264]
Description: hypothetical protein BN946_scf184943.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-09   37.8   0.0      5e-09   36.7   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    5.7e-08   33.3   0.0      1e-07   32.5   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.2e-07   31.5   0.0    3.7e-07   30.8   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    6.9e-07   29.2   0.0    9.5e-07   28.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    0.00011   22.1   0.0    0.00015   21.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    0.00045   19.8   0.0    0.00075   19.1   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0078   17.2   0.0      0.015   16.3   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   14.7   0.0       0.02   14.2   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
        0.1   12.5   0.0       0.16   11.9   0.0    1.2  1  Methyltransf_18  Methyltransferase domain
       0.19   11.5   0.0       0.25   11.1   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   2.8e-12     5e-09       2      97 .]      89     193 ..      89     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.8e-12
                      EEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC.CGBSS.STTTEEEEEEESTGGGSS...HHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl..nvefvqgda.edlpf.edgsfDlvvssgalhhls...dedlekal 86 
                      L++G+GtG + +a ++rl  g + vt +D++++ l++ar+r++++g+  ++e+v+ d+ e lp    +++D + +++ +h+l+   ++++ +++
       CDO71976.1  89 LEIGAGTGYYPAASSARLakGVKVVTLLDLNPNTLAYARSRLANAGFkgDIECVHRDVfEPLPDtMRARYDSIALFYLFHCLPgtfPKKATDVF 182
                      89******99988888877668999*******************99999*********6669953566999999988888765333577889** PP

                      HHHHHHEEEEE CS
  Methyltransf_25  87 keiarvLkpgG 97 
                      k +  +L pgG
       CDO71976.1 183 KAVVPALAPGG 193
                      **********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   5.6e-11     1e-07       1      94 [.      89     195 ..      89     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 5.6e-11
                      EEET-TTSHHHHHHH...HTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT...-EEEEEEES-CCC-.....CCHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala...krg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfedn...sfDlvvssevlhhv.....edpeka 80 
                      L++G+GtG++ +a      +g + v+ +Dl++++l++a+++  ++g+   +e+v+ d+ + p++d     +D + ++  +h +     ++  ++
       CDO71976.1  89 LEIGAGTGYYPAASSarlAKGvKVVTLLDLNPNTLAYARSRLANAGFkgDIECVHRDVFE-PLPDTmraRYDSIALFYLFHCLpgtfpKKATDV 181
                      89*******998888544344899***********************************9.888854449*************9988889**** PP

                      HHHHHHHEEEEEEE CS
  Methyltransf_11  81 lkeiaRvLkpgGll 94 
                      +k ++  L pgG++
       CDO71976.1 182 FKAVVPALAPGGVV 195
                      ************97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.1e-10   3.7e-07       1      98 [.      89     194 ..      89     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.1e-10
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieyt.gvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhl.....kdire 84 
                      LeiG+GtG + +a  ++l ++++++  +D++p+ ++ a+ +la  + +    +e  ++d+++  +    + +D + ++ ++h+l     k+  +
       CDO71976.1  89 LEIGAGTGYYPAASSARLaKGVKVVtLLDLNPNTLAYARSRLANAGFKG--DIECVHRDVFEPLPDtmrARYDSIALFYLFHCLpgtfpKKATD 180
                      8*********9999999997888777****************9999755..777777777777666888*******************99999* PP

  Methyltransf_12  85 vldnirklLkpgGr 98 
                      v++ +  +L+pgG+
       CDO71976.1 181 VFKAVVPALAPGGV 194
                      *************8 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.3e-10   9.5e-07       8      88 ..      89     171 ..      84     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.3e-10
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkae.vvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnala 88 
                      l++G+GtG++  +   +l ++ + v+++D +++ + +Ar+++++ g++  +e  + d++e l+ +  ++++D i  + ++++l+
       CDO71976.1  89 LEIGAGTGYYPAASSARLAKGVKvVTLLDLNPNTLAYARSRLANAGFKgDIECVHRDVFEpLPDT-MRARYDSIALFYLFHCLP 171
                      89*******98887778888888899*************************************76.4499*****999986654 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.3e-08   0.00015      24     138 ..      86     218 ..      60     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.3e-08
  Methyltransf_23  24 grvLdiGcGtGil..levlren.gf.svtgvDlspeaveiae..........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp..dpp.. 99 
                      +  L+iG+GtG+   ++++r   g+  vt+ Dl+p+  + a+           + + + d f e   +   +++d I l+++++ +p   p   
       CDO71976.1  86 SAHLEIGAGTGYYpaASSARLAkGVkVVTLLDLNPNTLAYARsrlanagfkgDIECVHRDVF-EPLPDTMRARYDSIALFYLFHCLPgtFPKka 178
                      567********752244443323664788*******999999*********88899999999.888888889***************7534422 PP

  Methyltransf_23 100 .ellrqiatllkpgGylllseplaslkedrllldwlylvp 138
                        +++ +   l+pgG+++  ++l s++  +++   l+   
       CDO71976.1 179 tDVFKAVVPALAPGGVVYGATILGSSAGHNWFGRRLMKLY 218
                      2566666669***********9999877777766554443 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.2e-07   0.00075      35     133 ..      88     193 ..      78     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.2e-07
                 EEEET-TTSHH.HHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST...TS-EEEEEE---STTTCHCHHHHHHHHHHHHH CS
         MTS  35 vlDlGcGaGvl.gaalakespeae.vtlvdvdarAlesakenleankle..vevvasdvleeve...ekkfdlivsNPPfhagkatelavaeeliaeAk 126
                  l +G+G+G+  +a+ a+  + ++ vtl+d + + l+ a+  l++ +++  +e+v++dv+e ++    +++d i     fh    t  + a++++++  
  CDO71976.1  88 HLEIGAGTGYYpAASSARLAKGVKvVTLLDLNPNTLAYARSRLANAGFKgdIECVHRDVFEPLPdtmRARYDSIALFYLFHCLPGTFPKKATDVFKAVV 186
                 6899*****98355566777777789**********************999*********988722246788777666666666666666666666666 PP

                 HHEEEEE CS
         MTS 127 eaLkegG 133
                  aL++gG
  CDO71976.1 187 PALAPGG 193
                 6666666 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.4e-06     0.015       1     101 [.      89     195 ..      89     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.4e-06
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealaslaagsiD......llfiDgghaaeav 84 
                      +EiG+  G+  ++  + l +     ++ +d +p   ++ a+ar+    ag++  ++ ++ d +e l++  + ++D      l+++  g   +++
       CDO71976.1  89 LEIGAGTGYYPAASSARLAKGV-KVVTLLDLNP---NTLAYARSrlanAGFKGDIECVHRDVFEPLPDTMRARYDsialfyLFHCLPGTFPKKA 178
                      79**666665555555555555.59999*****...777777766677****************999877677777776644444444344777 PP

  Methyltransf_24  85 ledleallprlapggvv 101
                       + ++a+ p lapggvv
       CDO71976.1 179 TDVFKAVVPALAPGGVV 195
                      7789***********98 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05      0.02      48     125 ..      85     166 ..      62     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                      TTEEEEES-TT-HHHHHHHHHHHHHHEE.EEEES-HHHHHHHHHHHHHHTSS.TEEEEE--T.TT-TTS-.T-EEEEEEES- CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkv.vvlDinenmLkvgekklkeegki.nieflqana.eeLpfed.dsfDvvtvsfG 125
                       +  l++ +Gtg + ++ s  + +  kv ++lD+n+n L  ++ +l + g++ +ie ++ +  e Lp +    +D++++ + 
       CDO71976.1  85 ESAHLEIGAGTGYYPAASSARLAKGVKVvTLLDLNPNTLAYARSRLANAGFKgDIECVHRDVfEPLPDTMrARYDSIALFYL 166
                      56779999****99888877777766651689*******************99*****987624466655355666666555 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.9e-05      0.16      17      80 ..      87     152 ..      81     162 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.9e-05
  Methyltransf_18  17 rvaDiGtDHgylpiylv..kegkakkviasDinegplekakeniekagledkievrlsdGleklke 80 
                        + iG+  gy p++      + +k v+  D+n++ l+ a++ +++ag++ +ie++  d +e+l +
       CDO71976.1  87 AHLEIGAGTGYYPAASSarLAKGVKVVTLLDLNPNTLAYARSRLANAGFKGDIECVHRDVFEPLPD 152
                      566788888888876551145789999**********************************99864 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.25      73     132 ..      84     145 ..      49     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                 TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE.EESBHHHHHHHHHHHHHCTTC.SEEEEES- CS
        PCMT  73 kgarvLevGsGsGyltavlarlvgekgrvvs.ierikelveeakrnlkkldle.nvivvvgD 132
                 + +  Le+G+G+Gy  a  +  + +  +vv+ ++  ++  + a+ +l + + + ++  v+ D
  CDO71976.1  84 RESAHLEIGAGTGYYPAASSARLAKGVKVVTlLDLNPNTLAYARSRLANAGFKgDIECVHRD 145
                 455679*******9988777777777777762577888888888888888776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1890.40
//
Query:       CDO71977.1  [L=418]
Description: hypothetical protein BN946_scf184943.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3094.45
//
Query:       CDO71978.1  [L=229]
Description: hypothetical protein BN946_scf184943.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-09   37.7   0.0    5.1e-09   36.7   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    3.3e-08   34.1   0.0    5.6e-08   33.3   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      6e-08   33.3   0.0    9.3e-08   32.7   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    3.9e-06   26.7   0.0    4.8e-06   26.4   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      6e-05   22.7   0.0    9.8e-05   22.0   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0018   18.1   0.0     0.0023   17.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
     0.0049   17.9   0.0      0.009   17.0   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
     0.0084   15.5   0.0       0.01   15.2   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.073   12.3   0.0       0.12   11.6   0.0    1.2  1  DUF43            Branched-chain polyamine synthase A C-termin
        0.1   12.5   0.0       0.15   11.9   0.0    1.2  1  Methyltransf_18  Methyltransferase domain
       0.16   11.7   0.0        0.2   11.4   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.17   11.6   0.0        0.2   11.4   0.0    1.2  1  Met_10           Met-10+ like-protein
       0.21   11.2   0.0       0.27   10.8   0.0    1.2  1  NodS             Nodulation protein S (NodS)


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   3.7e-12   5.1e-09       2      97 .]      55     159 ..      55     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 3.7e-12
                      EEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCG.BSS.STTTEEEEEEESTGGGSS...HHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl..nvefvqgdaed.lpf.edgsfDlvvssgalhhls...dedlekal 86 
                      L++G+GtG + +a ++rl  g + vt +D++++ l++ar+r++++g+  ++e+v++d+ d lp    +++D + + + +h+l+   ++++ +++
       CDO71978.1  55 LEIGAGTGYYPAASSARLakGVKVVTLLDLNPNTLAYARNRLANAGFkgDIECVHHDVFDpLPDtMRARYDSIALLYLFHCLPgtfPKKATDVF 148
                      89******99988888877668999*******************99999*********6658842555777777766677554333577899** PP

                      HHHHHHEEEEE CS
  Methyltransf_25  87 keiarvLkpgG 97 
                      k +  +L pgG
       CDO71978.1 149 KAVVPALAPGG 159
                      **********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   4.1e-11   5.6e-08       1      94 [.      55     161 ..      55     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 4.1e-11
                      EEET-TTSHHHHHHH...HTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT...-EEEEEEES-CCC-.....CCHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala...krg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfedn...sfDlvvssevlhhv.....edpeka 80 
                      L++G+GtG++ +a      +g + v+ +Dl++++l++a+++  ++g+   +e+v+ d+ + p++d     +D + +   +h +     ++  ++
       CDO71978.1  55 LEIGAGTGYYPAASSarlAKGvKVVTLLDLNPNTLAYARNRLANAGFkgDIECVHHDVFD-PLPDTmraRYDSIALLYLFHCLpgtfpKKATDV 147
                      89*******998888544344899************************************.888854449*************9988889**** PP

                      HHHHHHHEEEEEEE CS
  Methyltransf_11  81 lkeiaRvLkpgGll 94 
                      +k ++  L pgG++
       CDO71978.1 148 FKAVVPALAPGGVV 161
                      ************97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   6.8e-11   9.3e-08       1      98 [.      55     160 ..      55     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 6.8e-11
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieyt.gvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhl.....kdire 84 
                      LeiG+GtG + +a  ++l ++++++  +D++p+ ++ a+++la  + +    +e  + d++d  +    + +D + ++ ++h+l     k+  +
       CDO71978.1  55 LEIGAGTGYYPAASSARLaKGVKVVtLLDLNPNTLAYARNRLANAGFKG--DIECVHHDVFDPLPDtmrARYDSIALLYLFHCLpgtfpKKATD 146
                      8*********9999999997888777****************9999754..444444455544444566*******************99999* PP

  Methyltransf_12  85 vldnirklLkpgGr 98 
                      v++ +  +L+pgG+
       CDO71978.1 147 VFKAVVPALAPGGV 160
                      *************8 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.5e-09   4.8e-06       8      86 ..      55     135 ..      50     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.5e-09
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkae.vvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlna 86 
                      l++G+GtG++  +   +l ++ + v+++D +++ + +Ar+++++ g++  +e  + d+++ l+ +  ++++D i    ++++
       CDO71978.1  55 LEIGAGTGYYPAASSARLAKGVKvVTLLDLNPNTLAYARNRLANAGFKgDIECVHHDVFDpLPDT-MRARYDSIALLYLFHC 135
                      89*******98887778888888899*************************************76.4489**9877655543 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   7.1e-08   9.8e-05      21     131 ..      39     157 ..      31     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 7.1e-08
                 HHHHHHCHCC.TCSEEEEET-TTSHH.HHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST...TS-EEEEEE---STTTC CS
         MTS  21 klLletlpke.lsgkvlDlGcGaGvl.gaalakespeae.vtlvdvdarAlesakenleankle..vevvasdvleeve...ekkfdlivsNPPfhagk 111
                 ++Ll   +++ ++   l +G+G+G+  +a+ a+  + ++ vtl+d + + l+ a++ l++ +++  +e+v++dv++ ++    +++d i     fh   
  CDO71978.1  39 SVLLPFYQQHlRESANLEIGAGTGYYpAASSARLAKGVKvVTLLDLNPNTLAYARNRLANAGFKgdIECVHHDVFDPLPdtmRARYDSIALLYLFHCLP 137
                 67777777775566689*******98355566777777789**********************999********9988722246777776655555555 PP

                 HCHHHHHHHHHHHHHHHEEE CS
         MTS 112 atelavaeeliaeAkeaLke 131
                  t  + a++++++   aL++
  CDO71978.1 138 GTFPKKATDVFKAVVPALAP 157
                 55555555555555555555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06    0.0023      26     122 ..      54     168 ..      32     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
  Methyltransf_23  26 vLdiGcGtGil..levlren.gf.svtgvDlspeaveiae..........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp..dpp...e 100
                       L+iG+GtG+   ++++r   g+  vt+ Dl+p+  + a+           + + ++d f     +   +++d I l ++++ +p   p     
       CDO71978.1  54 NLEIGAGTGYYpaASSARLAkGVkVVTLLDLNPNTLAYARnrlanagfkgDIECVHHDVF-DPLPDTMRARYDSIALLYLFHCLPgtFPKkatD 146
                      59*******752244443323664788*******9999999*******999999999999.556666777***************753442225 PP

  Methyltransf_23 101 llrqiatllkpgGylllsepla 122
                      +++ +   l+pgG+++  ++l 
       CDO71978.1 147 VFKAVVPALAPGGVVYGATILG 168
                      56666669*******9988654 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.6e-06     0.009       1     101 [.      55     161 ..      55     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.6e-06
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealaslaagsiD...llfiDgghaa...eav 84 
                      +EiG+  G+  ++  + l +     ++ +d +p   ++ a+ar+    ag++  ++ ++ d ++ l++  + ++D   ll++  +  +   +++
       CDO71978.1  55 LEIGAGTGYYPAASSARLAKGV-KVVTLLDLNP---NTLAYARNrlanAGFKGDIECVHHDVFDPLPDTMRARYDsiaLLYLFHCLPGtfpKKA 144
                      79**666665555555555555.59999*****...767777766666****************999777566666664444333333233677 PP

  Methyltransf_24  85 ledleallprlapggvv 101
                       + ++a+ p lapggvv
       CDO71978.1 145 TDVFKAVVPALAPGGVV 161
                      7889***********98 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.4e-06      0.01      45     122 ..      48     129 ..      12     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.4e-06
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEE.EEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT.-TTS-.T-EEEEEE CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkv.vvlDinenmLkvgekklkeegki.nieflqanaee.Lpfed.dsfDvvtv 122
                      ++r +  l++ +Gtg + ++ s  + +  kv ++lD+n+n L  ++++l + g++ +ie ++ +  + Lp +    +D++++
       CDO71978.1  48 HLRESANLEIGAGTGYYPAASSARLAKGVKVvTLLDLNPNTLAYARNRLANAGFKgDIECVHHDVFDpLPDTMrARYDSIAL 129
                      456678899******99888877777776651689*******************99***99987543255544344555555 PP

>> DUF43  Branched-chain polyamine synthase A C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.4e-05      0.12      62     116 ..      71     127 ..      66     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
                 HHHT--SEEEEE-S-HHHHHHHHHHHHHHT--..EEEE---TTS---TTTSS-BSEE CS
       DUF43  62 aLtglpkkvvvvDiDeRlikfiervakelglk..ieaivyDlrkplpeelkekFdvf 116
                  L++  k v ++D+++  + +  +   + g+k  ie + +D+ +plp+++  ++d +
  CDO71978.1  71 RLAKGVKVVTLLDLNPNTLAYARNRLANAGFKgdIECVHHDVFDPLPDTMRARYDSI 127
                 4556667788899999999998776677777778********************987 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.15      19      80 ..      55     118 ..      45     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
  Methyltransf_18  19 aDiGtDHgylpiylv..kegkakkviasDinegplekakeniekagledkievrlsdGleklke 80 
                      + iG+  gy p++      + +k v+  D+n++ l+ a++ +++ag++ +ie++  d +++l +
       CDO71978.1  55 LEIGAGTGYYPAASSarLAKGVKVVTLLDLNPNTLAYARNRLANAGFKGDIECVHHDVFDPLPD 118
                      5677777887776541145778999*********************************999864 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015       0.2      76     132 ..      53     111 ..      20     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                 EEEEES-TTSHHHHHHHHHHCTTCEEEE.EESBHHHHHHHHHHHHHCTTC.SEEEEES- CS
        PCMT  76 rvLevGsGsGyltavlarlvgekgrvvs.ierikelveeakrnlkkldle.nvivvvgD 132
                   Le+G+G+Gy  a  +  + +  +vv+ ++  ++  + a+++l + + + ++  v+ D
  CDO71978.1  53 ANLEIGAGTGYYPAASSARLAKGVKVVTlLDLNPNTLAYARNRLANAGFKgDIECVHHD 111
                 469*******9988777777777777762588889999999999988877666666655 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014       0.2     106     164 ..      56     116 ..      48     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                 ETT-TTTCCHHH.CCHHTTSSEEEE.EES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG-- CS
      Met_10 106 dvfAGiGpfaip.iakyskakrvla.idlnPesvkylkeniklNkvekvvkpileDgrevi 164
                 ++ AG G+++ +  a+++k+++v++  dlnP++  y ++ ++    +  ++ + +D+ + +
  CDO71978.1  56 EIGAGTGYYPAAsSARLAKGVKVVTlLDLNPNTLAYARNRLANAGFKGDIECVHHDVFDPL 116
                 5669*****76527899***9988736*********9999999889999988888886655 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.27      45     114 ..      52     131 ..      29     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
        NodS  45 adalevGcaaG....alterlapyckrltvvdvveeaiararervkes...shiswivsdvqqf...stdekfdlivvae 114
                 +  le+G  +G    a + rla   k +t++d+ ++++a ar+r+ ++    +i  +  dv       + +++d i    
  CDO71978.1  52 SANLEIGAGTGyypaASSARLAKGVKVVTLLDLNPNTLAYARNRLANAgfkGDIECVHHDVFDPlpdTMRARYDSIALLY 131
                 56799999998444455789*************************99533368999999997641213456777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1509.99
//
Query:       CDO71979.1  [L=133]
Description: hypothetical protein BN946_scf184943.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.33   10.8   4.5       0.44   10.4   4.4    1.4  1  TMEM239       Transmembrane protein 239 family
       0.79    9.5   3.6       0.68    9.7   2.1    1.6  2  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208


Domain annotation for each model (and alignments):
>> TMEM239  Transmembrane protein 239 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.4   4.9e-05      0.44      82     135 ..      73     127 ..      26     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.9e-05
     TMEM239  82 lfttgshllrslwpvvaavwkhllpa.llllvlsalpallfaasfllllstllsl 135
                 ++t  + ll+s+  v a v+  ++p  l+  ++s + a l+a s l l+  l + 
  CDO71979.1  73 IYTINTGLLTSIVSVFAFVFALVIPGnLIYAAVSIVGAKLYANSVLALYVWLHAN 127
                 6899999******************725556899************999877655 PP

>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.4   3.6e+03      17      31 ..      22      36 ..      19      42 .. 0.71
   2 ?    9.7   2.1   7.5e-05      0.68      97     135 ..      71     109 ..      64     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.4
  TMEM208_SND2 17 Lknlrlislavnaly 31
                  L+ l++is +v + y
    CDO71979.1 22 LTDLHRISWMVSVAY 36
                  777888888777776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.5e-05
  TMEM208_SND2  97 viyltwivqvlsilfgnkfWllylviPayalYklwglil 135
                   +i+ t+ + +l+ +++  ++++ lviP+ ++Y +++ + 
    CDO71979.1  71 LIIYTINTGLLTSIVSVFAFVFALVIPGNLIYAAVSIVG 109
                   466677777788888879****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 890.76
//
Query:       CDO71980.1  [L=199]
Description: hypothetical protein BN946_scf184943.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        5.2    6.8   6.2         15    5.3   6.2    1.8  1  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208


Domain annotation for each model (and alignments):
>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.2   0.00084        15      97     135 ..      71     109 ..       8     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00084
  TMEM208_SND2  97 viyltwivqvlsilfgnkfWllylviPayalYklwglil 135
                   +i+ t+ + +l+ +++  ++++ l+iP+ ++Y ++++i 
    CDO71980.1  71 LIIYTINTALLTSIVSVLAFIFALIIPGNLIYAAVSVIG 109
                   577788888888888889****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1484.32
//
Query:       CDO71981.1  [L=144]
Description: hypothetical protein BN946_scf184943.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1031.26
//
Query:       CDO71982.1  [L=307]
Description: hypothetical protein BN946_scf184943.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2191.43
//
Query:       CDO71983.1  [L=354]
Description: hypothetical protein BN946_scf184943.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-63  214.6  13.7      2e-63  214.4  13.7    1.0  1  Solute_trans_a   Organic solute transporter Ostalpha
  ------ inclusion threshold ------
        0.5   10.3   6.1       0.15   12.0   2.0    1.9  3  Glycos_transf_4  Glycosyl transferase family 4


Domain annotation for each model (and alignments):
>> Solute_trans_a  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.4  13.7   2.3e-67     2e-63      42     265 .]       1     232 [.       1     232 [. 0.88

  Alignments for each domain:
  == domain 1  score: 214.4 bits;  conditional E-value: 2.3e-67
  Solute_trans_a  42 mvpiyavsSllsllfpsaavylelvrd....cYeafviysFfsllleylgg...eealikalerdekkkllpln.lclekvkltlkflkrcklgv 128
                     m+ +yav+S++s+ f+++++y++l++      Ye++++ +F++ll+e++     ++++ +a+ r++k+ +lpl+ +c +  +++++f++ +k++v
      CDO71983.1   1 MPAVYAVISFFSYRFFRSYTYYDLIETdfvsAYESVTLSAFLLLLIEFVAAtanDHKVDNAIVRKDKQ-SLPLPfCCWRYRPTKAYFMYAVKWSV 94 
                     899*******************8887422226*****************6533244444444444433.4566624445556669999******* PP

  Solute_trans_a 129 lQyvvvkpllaivslileslgvyce..sfspkfaylyltiiynvsvtlAlyalllfykalkkeLkpfkpvlKflciklvvfltfwQglvlsilvk 221
                     lQyv+++p+l+iv +++e++gv+ce   +s+++a+ y+t+i+ vs+t+Aly+ll+fy  +k+eL+  kp+ Kfl+ikl+v++tf+Qglv+++l++
      CDO71983.1  95 LQYVIIRPILSIVGIVCEYYGVLCEsgPWSFRTAHAYITVIDGVSITVALYGLLIFYGLTKEELAGKKPLCKFLSIKLIVMFTFYQGLVFDALEG 189
                     ************************6577*****************************************************************99 PP

  Solute_trans_a 222 vgviketkklsaediaagiqnllicvEMvlfailhlyaFpykeY 265
                       vi++t+++++++ia g+++l ic+EMv+f+ +++ya++++eY
      CDO71983.1 190 -RVIHATQYWTETNIADGLNALAICIEMVIFSAFMMYAYSWREY 232
                     .799***************************************9 PP

>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.1     1e+04      61      62 ..      38      39 ..       6      58 .. 0.54
   2 ?   -0.8   0.2      0.14   1.3e+03      85     104 ..     133     152 ..      83     184 .. 0.66
   3 ?   12.0   2.0   1.7e-05      0.15      74     108 ..     194     228 ..     138     236 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.1
  Glycos_transf_4 61 lg 62
                     l 
       CDO71983.1 38 LS 39
                     22 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.14
  Glycos_transf_4  85 DGldGlaagvsiiialalvv 104
                        +dG++++v++  +l+++ 
       CDO71983.1 133 TVIDGVSITVALYGLLIFYG 152
                      45566666665555555444 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 1.7e-05
  Glycos_transf_4  74 ivgvtNavNliDGldGlaagvsiiialalvvlaav 108
                       +     +N+ DGl+ la+++ ++i+ a++++a++
       CDO71983.1 194 ATQYWTETNIADGLNALAICIEMVIFSAFMMYAYS 228
                      33444789************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2638.71
//
Query:       CDO71984.1  [L=207]
Description: hypothetical protein BN946_scf184943.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1435.22
//
Query:       CDO71985.1  [L=454]
Description: hypothetical protein BN946_scf184943.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   10.0   2.3       0.32    9.6   2.3    1.1  1  PFL-like  Pyruvate formate lyase-like
          3    8.5   4.5        8.1    7.2   3.2    2.2  3  YabA      Initiation control protein YabA


Domain annotation for each model (and alignments):
>> PFL-like  Pyruvate formate lyase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.3   3.6e-05      0.32     184     247 ..     361     431 ..     330     434 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3.6e-05
                 HHCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......S-S.HHHHHHHHHHHHHHHHTT CS
    PFL-like 184 kldlddpeaiekaefykaviisleavieyaeryarlaeelaeq.......etd.pkrkaeLleiaevcgrvp 247
                 ++  +d  ++e ++ y+a+++++e++ ++a++ ar a+e a          +   ++ + L e+a+ + r++
  CDO71985.1 361 ST-VRDLFDEELKKLYRALREAVEGALQMARENARMARENARMahenaqkDRAiAQKDQALAEMARENTRLA 431
                 32.388899999*****************9666666665554411011002222444566777777777766 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.92   8.2e+03      83      94 ..     120     131 ..     110     133 .. 0.86
   2 ?    7.2   3.2    0.0009       8.1      13      68 ..     367     422 ..     359     433 .. 0.61
   3 ?    1.5   0.3     0.051   4.6e+02      24      49 ..     413     438 ..     405     441 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.92
                 XXXXXXXXXXXX CS
        YabA  83 iCnvlyGsrrke 94 
                 iC++++ ++r++
  CDO71985.1 120 ICHLSFMKERQG 131
                 9*****999975 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0009
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  13 leeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 ++e+l++l++ l+e  e   ++  ena++  en ++ ++ ++++++ ++k+++l e
  CDO71985.1 367 FDEELKKLYRALREAVEGALQMARENARMARENARMAHENAQKDRAIAQKDQALAE 422
                 45666667777777666677777777777777777666665555544444444433 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  24 leelkeelaelleenaeLeleneklr 49 
                 +++  ++lae+  en++L +e e ++
  CDO71985.1 413 IAQKDQALAEMARENTRLAAELEAFK 438
                 5666788999*********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3179.51
//
Query:       CDO71986.1  [L=520]
Description: hypothetical protein BN946_scf184943.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-09   39.0   0.0    1.9e-09   38.2   0.0    1.5  1  SET       SET domain
  ------ inclusion threshold ------
        3.6    7.9   7.1         13    6.1   7.1    1.9  1  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   2.1e-13   1.9e-09     105     169 .]     440     508 ..     361     508 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 2.1e-13
                 CCCHEE........EETEEEEEECCCGTTGGGCEEXS..SSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxx........xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 105 aiagys........idaralksgngagplarflNHsC..dpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                 a+++y+        +d  a ++gn++    rf+NH    + N+++ +  v++  r++vfA ++I++G El++dYg
  CDO71986.1 440 ATRRYVfglndvfsVD--AANAGNPS----RFINHAPsrKANVAACILLVNGHQRIGVFAKKRIAAGAELFMDYG 508
                 4444443333332267..88******....*****7422667777777779***********************8 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.1    0.0015        13      18      46 ..     250     280 ..     241     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0015
         IBR  18 lkwCprpdCeaiiekseg..cksvtCskCgf 46 
                 + wCp+pdC +++  s++  ++++t  +C++
  CDO71986.1 250 TLWCPTPDCTQAMCFSHSldQAKLTLDSCRY 280
                 67********999777775555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3763.96
//
Query:       CDO71987.1  [L=445]
Description: hypothetical protein BN946_scf184943.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.073   13.3   0.4       0.21   11.9   0.1    2.0  2  DUF4777   Domain of unknown function (DUF4777)
      0.079   11.8  13.2       0.15   10.9  13.2    1.4  1  Spc7      Spc7 kinetochore protein
       0.14   11.5   5.8       0.25   10.7   5.8    1.3  1  DUF4407   Domain of unknown function (DUF4407)
       0.38   10.6  13.3      0.097   12.4   1.5    2.5  2  DivIC     Septum formation initiator
       0.62    9.3   4.8        1.1    8.5   4.8    1.3  1  MPS2      Monopolar spindle protein 2
        1.7    9.3  10.5       0.53   10.9   0.7    2.8  2  SlyX      SlyX


Domain annotation for each model (and alignments):
>> DUF4777  Domain of unknown function (DUF4777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.1   9.4e+03      24      45 ..      27      45 ..      12      46 .. 0.61
   2 ?   11.9   0.1   7.1e-05      0.21      17      51 ..     154     188 ..     141     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.1
     DUF4777 24 EivervaerydlseeelkkvVk 45
                 +   v++++ + + +l+k+V+
  CDO71987.1 27 NV---VTRKLRERSTQLQKEVE 45
                33...45566666666666665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.1e-05
     DUF4777  17 nrPaTldEivervaerydlseeelkkvVkntLeaA 51 
                  ++aT+dE++ ++ + ++l+ +e+  +V+n ++ +
  CDO71987.1 154 TTIATFDEVILHMVRTLNLEISEVATQVTNSFHVG 188
                 579***************************99966 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  13.2   5.1e-05      0.15     141     233 ..      30     122 ..      24     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.1e-05
        Spc7 141 kegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleele 233
                   +l+e+ ++l+++ e+ ++q++el + l++ +++ a++eee + + e+   ++s+ ++eL +  ++l+++++e+ ++++++ +lq+ l + +
  CDO71987.1  30 TRKLRERSTQLQKEVERGKAQRDELLAELEAERQRTAKIEEEKRAEAEFWWRMDSLARTELSKKEQALKKQDEELVAQREQIRDLQNSLRRAR 122
                 56889999999999999999999999999999999999999999999999999**********************************998765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.8   8.4e-05      0.25     136     233 ..      31     125 ..      20     149 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.4e-05
     DUF4407 136 aeleaqiaalqaeidaaearldalraeaqkeldgtk.................gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalra 217
                 ++l+++ ++lq+e++  +a++d+l ae+++e + t                  +   t    k++a k+                     +++l a+r+
  CDO71987.1  31 RKLRERSTQLQKEVERGKAQRDELLAELEAERQRTAkieeekraeaefwwrmdSLARTELSKKEQALKKQ--------------------DEELVAQRE 109
                 4455555566666666666666666666666665331111111333333344422222233344444444....................555555555 PP

     DUF4407 218 elaeleaerakeraas 233
                 ++ +l++ ++++r+  
  CDO71987.1 110 QIRDLQNSLRRARSLR 125
                 5555555555444433 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.5   3.3e-05     0.097       5      64 ..      16      75 ..      12      79 .. 0.89
   2 ?    2.9   4.4      0.03        90      19      51 ..      90     122 ..      86     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
                XXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXX CS
       DivIC  5 fllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARse 64
                f+l++ ++++  +  ++l++  ++lq+e+++ ka+++eL ae++  ++  + iee  R e
  CDO71987.1 16 FALFVTTLTYANVVTRKLRERSTQLQKEVERGKAQRDELLAELEAERQRTAKIEEEKRAE 75
                7788888889999999*************************************9987766 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 +++++q ++++ +el+++++++++L+  +++ +
  CDO71987.1  90 LSKKEQALKKQDEELVAQREQIRDLQNSLRRAR 122
                 567778888888888888888888887766654 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.8   0.00036       1.1     116     199 ..      31     116 ..       9     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00036
        MPS2 116 krlvvlsskns.ekdslstprkkilldllkkqesPeklrrsnrklkaLevrveslkd.ELeakdevlrekeRelleLkkrlseyke 199
                 ++l++ s++ + e ++  + r++ l++l  +++  +k    +r       r++sl + EL++k++ l++++ el+  ++++ ++++
  CDO71987.1  31 RKLRERSTQLQkEVERGKAQRDELLAELEAERQRTAKIEEEKRAEAEFWWRMDSLARtELSKKEQALKKQDEELVAQREQIRDLQN 116
                 34666666655045566677788888999999999***999999***********765***********************99986 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   3.3      0.13   3.9e+02      14      56 ..      25      67 ..      21      77 .. 0.62
   2 ?   10.9   0.7   0.00018      0.53      11      47 ..      89     125 ..      87     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.13
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX 14 fqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessga 56
                +   +  +L +  ++ q++++r ++q ++l  +l++ ++++++
  CDO71987.1 25 YANVVTRKLRERSTQLQKEVERGKAQRDELLAELEAERQRTAK 67
                5555566677777788888888888888887777555544432 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        SlyX  11 klafqedtieeLndvvaeqqqqidrlqrqlrllaerl 47 
                 +l+  e+++++ ++++++q++qi  lq  lr+ +   
  CDO71987.1  89 ELSKKEQALKKQDEELVAQREQIRDLQNSLRRARSLR 125
                 5777899***********************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1321  (0.0736795); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2981.74
//
Query:       CDO71988.1  [L=692]
Description: hypothetical protein BN946_scf184943.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.029   14.7   7.0      0.044   14.1   5.5    2.0  2  DUF737       Protein of unknown function (DUF737)
      0.079   13.2   1.0       0.35   11.1   1.0    2.1  1  DUF5082      Domain of unknown function (DUF5082)


Domain annotation for each model (and alignments):
>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.5     5e-06     0.044      51     193 ..      40     188 ..      15     194 .. 0.67
   2 ?   -1.9   0.0       0.4   3.6e+03      55     103 ..     417     465 ..     349     500 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-06
      DUF737  51 pqessskaaestsapssasssssqakveeeelrkkikeelqkrleeeqakaea.....vqeelakllerEreaaqeelteailrerlstedErlkaqll 144
                 + es +   ++++ p+  +  + +++++e+e + ++++e+ ++  ee a          +  + + +  E+  +q + + + l+  ++t + rl+a l 
  CDO71988.1  40 SAES-TPDRAQEADPKPLKGLTVEKSTNEQECEVRAESEVAQHRPEEMAP--VlyeldARMHIDRAAPLEKDLKQATAQISELQHTAKTYQGRLRATLA 135
                 1122.222223333333456667777777777777777775553333333..122333456899999999999999999999***************** PP

      DUF737 145 elerkarqLeekekeLkkqdafYkeqlakLeeknaefykvta....eqfqkaa 193
                  le+k+r+L +    L k d+   + +  L e+      +ta    ++f+ka 
  CDO71988.1 136 LLETKIRELHDAQTFLTKVDDVSDNDVVDLVERLNSRIHQTAaniaDKFRKAY 188
                 **********************9999877777777666666511116677765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.4
      DUF737  55 sskaaestsapssasssssqakveeeelrkkikeelqkrleeeqakaea 103
                 ss++a+s + p +     +++ v + +l++  +e+ q ++e e   a +
  CDO71988.1 417 SSSTAASGARPFREVILLKPKVVLDTTLNQLHREQSQGQFESEGRNAAS 465
                 3556666666666677777777888888888888888888777665444 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   3.9e-05      0.35       2      73 ..     113     186 ..     100     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
     DUF5082   2 ktkisklqaqiael....rseiaaleekIerLkeaktklsdekeslkqkkkklekplnssesWkGkeennydgirs 73 
                 +++is+lq+ +  +    r+++a le kI++L  a t+l++++   +++  +l + lns    + +++n  d +r 
  CDO71988.1 113 TAQISELQHTAKTYqgrlRATLALLETKIRELHDAQTFLTKVDDVSDNDVVDLVERLNSR--IHQTAANIADKFRK 186
                 5677777777666500005566789****************9998888888888887776..44445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4703.98
//
Query:       CDO71989.1  [L=616]
Description: hypothetical protein BN946_scf184943.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.27    9.4   0.1       0.76    7.9   0.0    1.7  2  HSP70     Hsp70 protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.05     9e+02       1      16 [.      15      30 ..      15      79 .. 0.58
   2 ?    7.9   0.0   4.3e-05      0.76     184     343 ..     225     385 ..     213     414 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.05
                EEEEEEXSSEEEEEEE CS
       HSP70  1 viGiDLGttnsvvavm 16
                v+ +D+Gtt+s va +
  CDO71989.1 15 VVAMDVGTTYSGVAYA 30
                5778999999999854 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 4.3e-05
                 SCEEEEEEEEXSSXEEEEEEEEE.TTEEEEEEE.EEETTXSH.HHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEE CS
       HSP70 184 kernvlvyDlGggtfdvSilele.kGvfevkaT.agDthlGG.edfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinlei 279
                 + +nv+++D Gggt d+S  ++     + v    + D  l G      + +++l e++k +       +++ ++ + +  +k  k++ + +++   +++
  CDO71989.1 225 DGENVMIVDAGGGTIDISTYTFVtTNPLSVEEIaSPDCILQGaTRLKIRAAQFLKERLKDS-PYG---NDEDIKTMVDYFDKSTKTVFKDANEPSYIKF 319
                 5789**************9998614467777651457666551556666667766666665.222...2233444555555555555555778888888 PP

                 EEEETTTEEEEEEEEHHHHH...HHHHHHHHHTHHHHHHHHH.HCTEEGGGCSEEEEESGGGGSHHHH CS
       HSP70 280 etvdedgkdlseklsRakfe...elvedllertlepvekalk.daklkkeeidevvlvGGstRiPkvq 343
                  +++   +d + ++ R ++    +++e l++  l+++  a++ + +     i+ v lvGG +  P + 
  CDO71989.1 320 GSMKC--NDPKHNIRRGQLTiagTIMESLFKPSLDAIVIAIAsQQQTALRPISTVFLVGGFAASPWLY 385
                 88888..4567778888875334678888887777766666514555578899999999987776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4307.48
//
Query:       CDO71990.1  [L=461]
Description: hypothetical protein BN946_scf184943.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.04   13.5  17.1      0.059   12.9  17.1    1.2  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
      0.045   14.0  25.0        1.2    9.4  23.9    2.2  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
      0.051   12.0   0.8      0.072   11.5   0.8    1.3  1  Hemagglutinin    Haemagglutinin
      0.057   13.4   8.5       0.13   12.2   8.5    1.7  1  SOAR             STIM1 Orai1-activating region
      0.063   11.5  14.9      0.083   11.1  14.9    1.1  1  FPP              Filament-like plant protein, long coiled-coi
       0.16    9.4  18.2       0.21    9.0  18.2    1.1  1  DUF3584          Protein of unknown function (DUF3584)
       0.17   12.0  15.5        0.3   11.2  15.5    1.5  1  ADIP             Afadin- and alpha -actinin-Binding
       0.27   11.2   4.4       0.48   10.4   4.4    1.5  1  DUF489           Protein of unknown function (DUF489)
       0.44   10.6  17.4        1.2    9.3  17.4    1.7  1  ATP-synt_B       ATP synthase B/B' CF(0)
       0.59    9.2  10.9       0.87    8.6  10.9    1.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su
        0.7   10.1  25.5         22    5.2  25.5    2.2  1  ATG16            Autophagy protein 16 (ATG16)
        1.1    7.1   8.6        1.4    6.7   8.6    1.1  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        1.4    7.9  12.6        2.1    7.3  12.6    1.2  1  Perilipin        Perilipin family
        1.7    9.3  16.8        1.7    9.3   9.3    2.3  2  BST2             Bone marrow stromal antigen 2
        1.7    7.9  18.9        3.7    6.8  18.9    1.5  1  DUF3450          Protein of unknown function (DUF3450)
        1.8    7.1   7.6        2.8    6.5   7.6    1.3  1  FapA             Flagellar Assembly Protein A
        2.5    6.8   9.8        3.4    6.4   9.8    1.1  1  ALMT             Aluminium activated malate transporter
        3.2    7.2  13.3        4.8    6.7  13.3    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
        3.6    8.2   6.2          2    9.0   0.9    3.0  3  EF-G-binding_N   Elongation factor G-binding protein, N-termi
          4    7.8   8.2        2.6    8.4   0.2    2.4  2  TINF2_N          TERF1-interacting nuclear factor 2 N-terminu
        6.3    7.1  12.1         10    6.4  12.1    1.3  1  Vfa1             AAA-ATPase Vps4-associated protein 1
        8.3    6.9  14.7        3.3    8.2   1.0    2.5  2  Snapin_Pallidin  Snapin/Pallidin


Domain annotation for each model (and alignments):
>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  17.1   7.3e-05     0.059      45     161 ..      63     180 ..      49     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.3e-05
  HAUS-augmin3  45 egeaLeeaLktie.psdlkqedvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraen 140
                    +e++++a +t++ + d++  ++++ e++l + ee++e +++ +  L ++ +  + + n+ + + a l+ e++ l +  ++ + +lkeaq  l+++ 
    CDO71990.1  63 REEDMQDAIQTLQtELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKASNMQKNEVERAFARLETEQEHLISMLETRTAELKEAQTYLSRTD 159
                   6999*********54445558899999********************************************************************99 PP

  HAUS-augmin3 141 aetnavLqqlteeakqlaeyf 161
                      +++  ql+e  ++++++ 
    CDO71990.1 160 DVSDSEVLQLVERINSQMYQT 180
                   999999999999888888765 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  23.9    0.0014       1.2      41     141 ..      53     164 ..      46     168 .. 0.73
   2 ?    6.9   5.3    0.0082       6.6      41     101 ..     116     176 ..     112     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele......lkaknaadql.srleekeael 129
                    ++++ e+ + ++e++++++++L+te+++e+ +rk+ ee+l ++e++ e+ +k      +ql+  n + +      ++++  +++l s le + ael
     CDO71990.1  53 ATKDLEATKRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKASNMQKNeverafARLETEQEHLiSMLETRTAEL 148
                    56778899999***********************************99999887777777765555444233555666666666415566667777 PP

  Jnk-SapK_ap_N 130 kkeysklhe....ret 141
                    k+ ++ l++    +++
     CDO71990.1 149 KEAQTYLSRtddvSDS 164
                    6666655555555555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0082
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveql 101
                       +++e e    +l+ e e+L + +e ++++ k+a+  l +++d+ ++e  +l e++++ 
     CDO71990.1 116 SNMQKNEVERAFARLETEQEHLISMLETRTAELKEAQTYLSRTDDVSDSEVLQLVERINSQ 176
                    55567788888999*************************************9999999875 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   8.9e-05     0.072     388     475 ..     110     198 ..      50     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.9e-05
                    TTEEEBXSSXXTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHGGGEEEESSSEEEESSXXTHH CS
  Hemagglutinin 388 nkqleavgkelnelekrieeldkkvddgfldvityniellvll.enerildfedsnvknleekvkkqlkdnakeiGnGcfefkhkcdne 475
                      ql+a   + ne+e+    l+ + + +   + t  +el        r+ d  ds+v++l e++++q+ ++a  i nG    + k  +e
     CDO71990.1 110 SSQLKASNMQKNEVERAFARLETEQEHLISMLETRTAELKEAQtYLSRTDDVSDSEVLQLVERINSQMYQTASTIANGFQSSYGKQRDE 198
                    56777778888888888888888888888888888888865430457999****************************98888876665 PP

>> SOAR  STIM1 Orai1-activating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   8.5   0.00016      0.13      12      87 ..      71     145 ..      61     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
        SOAR  12 qlTyelElkylnkkkqeaekqlqeAkeeveklkkkrssllgslrlahssslddvdkkileakqaleevtkelkerq 87 
                 ++T ++El + +  ++++e+ql++A+e++e+ kk  + l ++l+     + ++v+++  ++ ++ e++ + l+ r+
  CDO71990.1  71 IQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKAS-NMQKNEVERAFARLETEQEHLISMLETRT 145
                 46999***************************99999999999865.55667888888888887777766666554 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  14.9    0.0001     0.083     703     814 ..      42     160 ..       7     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
         FPP 703 ekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleael.......nelkqkieaLeveLeeekks 794
                 +   le  +++at++le++k + +++   ++ l++eL++ + +++  e+ql++ +e  e    +at+l ++l       ne+++ + +Le e e   ++
  CDO71990.1  42 RHLALEGAFAKATKDLEATKRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLkasnmqkNEVERAFARLETEQEHLISM 140
                 45578999******************************************9999888877777777777766111111145555566666666666666 PP

         FPP 795 heeleakckelqeqlervek 814
                  e   a+ ke q  l r+  
  CDO71990.1 141 LETRTAELKEAQTYLSRTDD 160
                 66667777777777776653 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  18.2   0.00026      0.21     596     745 ..      38     189 ..      32     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00026
     DUF3584 596 dyaaseeeLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlk 694
                 dy +   +L+ + ++++++l++ + +++ ++ ++++l+ el+e++ a +  +++l++a+++ er +++  +++ +l++  + +k+++e++   l+ +++
  CDO71990.1  38 DYRQRHLALEGAFAKATKDLEATKRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKA-SNMQKNEVERAFARLETEQE 135
                 577777799999999999999999999999999999999999999999999999999999999999999999999975.56788999999999999998 PP

     DUF3584 695 qleeqqkaaleelke..dlseerl.ekkakwqevvgeldeqlaelkkaieaart 745
                  l    +   +elke  ++  ++     +++ ++v+ ++ q+ +   +i++  +
  CDO71990.1 136 HLISMLETRTAELKEaqTYLSRTDdVSDSEVLQLVERINSQMYQTASTIANGFQ 189
                 775544444444433112333332034556677777777777777777766443 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  15.5   0.00037       0.3      19     125 ..      53     155 ..      38     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
        ADIP  19 skllfdtatekveeniaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekee 117
                   +  +++ + +ee+++ +i +   L   +d+++ +r++ +e++r+ e   er ++    l+ ql+++ ++   v+++ + le+++++l++ l + + e
  CDO71990.1  53 ATKDLEAT-KRREEDMQDAIQT---LQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKASNMQKNEVERAFARLETEQEHLISMLETRTAE 147
                 44444444.7889999998888...77899**************************************************************9999999 PP

        ADIP 118 lqrlknal 125
                 l+  ++ l
  CDO71990.1 148 LKEAQTYL 155
                 88777655 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.4   0.00059      0.48      19     126 ..      31     148 ..      24     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00059
                 HHHHS---HHHHHHHHHHHH--S-SSHHHHTTSGGGGHHHHHHHHHHHHT--SCHHH..........HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHT CS
      DUF489  19 lArtGqadeealetllkslletdpestedvygglanlklGletlleqlekekkkkda..........eltryalsllalerkLsknkealaklgerieq 107
                 l r+G+ d ++ + +l+  ++   +++e+   ++++++ +++tl++ l++e+ +++a          +  ry  +  +l+++L+ ++  ++++++   +
  CDO71990.1  31 LRRHGEGDYRQRHLALEGAFAKATKDLEATKRREEDMQDAIQTLQTELDEERLARKAneeqlrqaeeNAERYKKHATHLSSQLKASNMQKNEVERAFAR 129
                 557888888999999999999999999999999*************999988753333344555665789***************************** PP

                 THHHHTTS-TTSHHHHHHH CS
      DUF489 108 ierqlehfdllhenvlanl 126
                 +e+++eh   + e+ +a+l
  CDO71990.1 130 LETEQEHLISMLETRTAEL 148
                 *******955555555544 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  17.4    0.0014       1.2      28     122 ..      60     148 ..      50     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
  ATP-synt_B  28 LdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIeqekdralaeLreqvval 122
                  + Ree  +d+i+  ++  +e   + ++ e+ql++A+ +A+++ k+A+  +++lk+   ++ e  +    e A a++e+e++ +++ L+ + ++l
  CDO71990.1  60 TKRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKASNMQKNE--V----ERAFARLETEQEHLISMLETRTAEL 148
                 578*************************************************99876554433..3....3456666666666666666665554 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.9    0.0011      0.87      44     168 ..      52     176 ..      23     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
       Atg14  44 kiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...kRrsdleslqneleerrkkqiaklqda 139
                 k +k le ++      ++++  ++++++l+++  + r   +  +++l+q  +  e  kk+  +ls++lk     + + e +  +le +++++i++l + 
  CDO71990.1  52 KATKDLEATK------RREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKasnMQKNEVERAFARLETEQEHLISMLETR 144
                 4444444444......56666666777777777777777777777777777777777777777777777777445566999999999999999999999 PP

       Atg14 140 ikrieqklsslssktles...rsslcselakl 168
                 + + ++ ++ ls++   s    ++l++ +++ 
  CDO71990.1 145 TAELKEAQTYLSRTDDVSdseVLQLVERINSQ 176
                 99888887777777777733433344444444 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  25.5     0.027        22      57     167 ..      26     134 ..       5     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.027
       ATG16  57 sakekeasasq......snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrek 149
                  +        q       + + +++  +le + a+  ++l+++ ++ +++++ +++l++el++ +   k++ee+l+++e++ ++ ++    +  +l+  
  CDO71990.1  26 HR--------QtslrrhGEGDYRQRHLALEGAFAKATKDLEATKRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKAS 116
                 11........12233334577888888999999999999999999999999999999999999888888888888888777777777777777777666 PP

       ATG16 150 eklvqdlqDElsaLqlql 167
                 +   +++  + + L+ + 
  CDO71990.1 117 NMQKNEVERAFARLETEQ 134
                 665555555555554442 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6    0.0017       1.4      28     125 ..      60     154 ..      43     216 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
  V_ATPase_I  28 evrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeee 125
                   rr ++m+  ++ l++e+++ e   +k++   e++ ++ e++ ++++++ ++l ++lk  n +++++++ + +l+ +++ l ++ e  ++e +e ++ 
  CDO71990.1  60 TKRREEDMQDAIQTLQTELDE-ERLARKAN---EEQLRQAEENAERYKKHATHLSSQLKASNMQKNEVERAFARLETEQEHLISMLETRTAElKEAQTY 154
                 458999999999999999999.44444433...344455555666777777777777777777777777777776544433333333222221222211 PP

>> Perilipin  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  12.6    0.0025       2.1     219     339 ..      81     199 ..      40     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--...---------------------------------..SHHHHHHHHHHHHHHHHHH CS
   Perilipin 219 aklrerAyqhsleklrqakqraqealaqlsstldLielakkglsaanqklseaqekllqswlewkkkqqeeseeeeeeeeeeqvEsrtLsllrsltqqL 317
                 ++l ++A ++ l++++++ +r ++  ++lss l+  ++ k++++ a  +l+ +qe l  ++   ++++ +e ++  ++ ++   +s++L+l++ +  q+
  CDO71990.1  81 ERLARKANEEQLRQAEENAERYKKHATHLSSQLKASNMQKNEVERAFARLETEQEHLISMLET-RTAELKEAQTYLSR-TDDVSDSEVLQLVERINSQM 177
                 57888899999999999999999**********************************666555.55555555554444.38999*************** PP

                 HHHHHHHHHTTTTS-HHHHHHH CS
   Perilipin 318 qttcqslvssiqglPssvqekv 339
                  +t ++++   q+   + ++++
  CDO71990.1 178 YQTASTIANGFQSSYGKQRDEA 199
                 ******9998887665555555 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.6     0.091        74      58      85 ..      54      81 ..      39      86 .. 0.61
   2 ?    9.3   9.3    0.0021       1.7      29      90 ..      88     149 ..      80     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.091
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 58 kaqsqkqqakvqelqgeikkLnqkLqda 85
                +   +  +++ +++q+ i++L+ +L++ 
  CDO71990.1 54 TKDLEATKRREEDMQDAIQTLQTELDEE 81
                3344444556666666666666666654 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        BST2  29 aqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaeve 90 
                  +e+lr+ae +a  +++    L++ L+  + q+++ ++    l+ e ++L  +L+   ae++
  CDO71990.1  88 NEEQLRQAEENAERYKKHATHLSSQLKASNMQKNEVERAFARLETEQEHLISMLETRTAELK 149
                 3689****************************************************999987 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  18.9    0.0045       3.7       9     111 ..      45     150 ..      43     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0045
     DUF3450   9 lasgalaatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneq...lerlvasqeqeiasleeqieeieeierelvpllek 104
                 ++ ga+a++ +++++++++  + + ++q+ +++ld+e+   +a+ ++l++  e++e y+++   l++++++ + + +++e+  +++e  +++l  +le+
  CDO71990.1  45 ALEGAFAKATKDLEATKRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHathLSSQLKASNMQKNEVERAFARLETEQEHLISMLET 143
                 566778888888888888888888888888888888888777777777777777777766600055555566667888899999999999999999998 PP

     DUF3450 105 midrLeq 111
                   ++L++
  CDO71990.1 144 RTAELKE 150
                 8888876 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.6    0.0034       2.8     334     411 ..      77     158 ..      40     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0034
        FapA 334 elkekl...keleeeleeleeeleklkkk.ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                 el+e++   k+ ee+l++ ee+ e++kk   ++ ++lka+++++ e +  +++l++++e+l + le  ++elke +  l + 
  CDO71990.1  77 ELDEERlarKANEEQLRQAEENAERYKKHaTHLSSQLKASNMQKNEVERAFARLETEQEHLISMLETRTAELKEAQTYLSRT 158
                 3333333447788888999999999999944444556679999999999999999999999999999999999999998887 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.8    0.0041       3.4     318     416 ..      52     154 ..       8     186 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0041
        ALMT 318 kkmkklskveellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkee.ekeseskkeeaeaveeaeseseksl....lkeskrslkls 411
                 k +k l+ ++   ++++ a+++Lq++ld++  L  ++++++  + +e+ae++++++++ +++ ++++ ++++ve a ++ e+++    ++ ++r+++l+
  CDO71990.1  52 KATKDLEATKRREEDMQDAIQTLQTELDEER-LARKANEEQLRQAEENAERYKKHATHlSSQLKASNMQKNEVERAFARLETEQehliSMLETRTAELK 149
                 334444446677899*************999.7777777665555555555544333203333333333333222222222222000012222222222 PP

        ALMT 412 kkesa 416
                 + ++ 
  CDO71990.1 150 EAQTY 154
                 22222 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  13.3    0.0059       4.8     143     277 ..      58     197 ..      22     209 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0059
  Exonuc_VII_L 143 aeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerlera..lkkqlkkkrerleelkerlkekleekkerlkklke 237
                   +  +++ e++++   + +++ l+e++   ++ +++l+++ee  er +++ ++l+++l+++  +k++++++ +rle+ +e+l + le+++++lk+ ++
    CDO71990.1  58 EATKRREEDMQD-AIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKASnmQKNEVERAFARLETEQEHLISMLETRTAELKEAQT 153
                   333333222222.223334445555544455566666666777777777777777776653233337777777777776664566666667766666 PP

  Exonuc_VII_L 238 rle.lleekkerleeleekleal..splkvLkrGyaivrk.edg 277
                    l+ + + +++++ +l e++++   +  +++++G+   +  + +
    CDO71990.1 154 YLSrTDDVSDSEVLQLVERINSQmyQTASTIANGFQSSYGkQRD 197
                   66632223344455566666554114456777777766664445 PP

>> EF-G-binding_N  Elongation factor G-binding protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       3.3   2.7e+03      26      52 ..      56      82 ..      51     117 .. 0.57
   2 ?    9.0   0.9    0.0025         2      38      74 ..     120     157 ..     114     161 .. 0.92
   3 ?   -0.8   0.0       2.8   2.3e+03      15      59 ..     182     236 ..     172     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.3
  EF-G-binding_N 26 DkkvveavkalaaekIlelfpelseeq 52
                    D +  +  ++ +++ I+ l +el ee+
      CDO71990.1 56 DLEATKRREEDMQDAIQTLQTELDEER 82
                    555555556666666666666665554 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0025
  EF-G-binding_N  38 aekIlelfpelseeqkelLeqiddik.tkekaeklLee 74 
                     +++++ +f  l++eq+ l++ +++ + + ++a+ +L++
      CDO71990.1 120 KNEVERAFARLETEQEHLISMLETRTaELKEAQTYLSR 157
                     789***********************9********975 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.8
  EF-G-binding_N  15 eqllnayrsvnDkkvveavkalaaekIlel..........fpelseeqkelLeqi 59 
                     +++ n ++s+  k+  eav+a aa+++ ++          ++++ +e+ + L qi
      CDO71990.1 182 STIANGFQSSYGKQRDEAVRADAASRLVQAgllgpdlprlLSNADHERDNVLVQI 236
                     5677778888888888999999999998887777777666677777766666555 PP

>> TINF2_N  TERF1-interacting nuclear factor 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   3.3      0.39   3.2e+02      54     104 ..      66     115 ..      57     129 .. 0.74
   2 ?    8.4   0.2    0.0032       2.6      63     126 ..     134     201 ..     122     211 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.39
     TINF2_N  54 ekaadlkaiqshlerlrasaakstkkkdekveeaqenflklvqsLledpee 104
                 + +  ++++q+ l++ r   +k++++++++ ee  e ++k+  +L+++ + 
  CDO71990.1  66 DMQDAIQTLQTELDEERLA-RKANEEQLRQAEENAERYKKHATHLSSQLKA 115
                 3377889999****99995.6888899999999999999998888766443 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0032
     TINF2_N  63 qshlerlrasaa....kstkkkdekveeaqenflklvqsLledpeerekflqeefpeeYGekfdaale 126
                 q+hl ++  +++    ++++  ++    + +++l+lv+ + ++  + ++ + + f++ YG++ d+a+ 
  CDO71990.1 134 QEHLISMLETRTaelkEAQTYLSRTDDVSDSEVLQLVERINSQMYQTASTIANGFQSSYGKQRDEAVR 201
                 444444444333233244444555556678899*****************************999886 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  12.1     0.012        10      43     155 ..      43     159 ..      41     183 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
        Vfa1  43 HLkD.kqFatpivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeeekkkelkkaeeelee.....k 135
                 HL+    Fa+  +d e++  +++++++++ i+ +++e++e++ ++k +e++ ++++++ +  kk+ ++ +++ k+ ++ +k+e ++a ++le+      
  CDO71990.1  43 HLALeGAFAKATKDLEAT--KRREEDMQDAIQTLQTELDEERLARKANEEQLRQAEENAERYKKHATHLSSQLKA-SNMQKNEVERAFARLETeqehlI 138
                 665435688877777333..477777**************99999988888866666666666666665555555.44444555554444444112242 PP

        Vfa1 136 eeprvkkykLhk.efyqsRle 155
                 +  ++++ +L++ + y sR++
  CDO71990.1 139 SMLETRTAELKEaQTYLSRTD 159
                 222222334433245555555 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   7.3      0.23   1.9e+02      12      80 ..      47     114 ..      44     121 .. 0.79
   2 ?    8.2   1.0     0.004       3.3      17      51 ..     122     156 ..     118     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
  Snapin_Pallidin  12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlq 80 
                      e +  + ++ l+++++  e++++ +++l+++L+e + a + +  ++l++  +   + kk+ + l+++l+
       CDO71990.1  47 EGAFAKATKDLEATKRREEDMQDAIQTLQTELDEERLARK-ANEEQLRQAEENAERYKKHATHLSSQLK 114
                      5567788999**********************97666666.3447888888888888888888888776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.004
  Snapin_Pallidin  17 eldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                      e++  ++ l+++Qe+L ++l++ +++Lke++ + +
       CDO71990.1 122 EVERAFARLETEQEHLISMLETRTAELKEAQTYLS 156
                      67888999********************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2298  (0.128172); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.42
# Mc/sec: 3289.88
//
Query:       CDO71991.1  [L=231]
Description: hypothetical protein BN946_scf184943.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1609.08
//
Query:       CDO71992.1  [L=1927]
Description: hypothetical protein BN946_scf184943.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-24   84.2   0.0    1.4e-23   83.2   0.0    1.5  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    4.4e-16   58.7   0.7    9.5e-16   57.7   0.7    1.6  1  Integrase_H2C2   Integrase zinc binding domain
      2e-15   56.7   0.0    3.8e-15   55.7   0.0    1.5  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    3.9e-14   52.7   0.0    6.9e-14   51.9   0.0    1.3  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    2.3e-07   30.6   0.0    4.7e-07   29.6   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
    2.1e-06   27.9   0.1    2.1e-06   27.9   0.1    2.1  1  Retrotrans_gag   Retrotransposon gag protein
    5.6e-06   26.8   0.0    1.2e-05   25.7   0.0    1.6  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    0.00021   21.9   0.0    0.00054   20.6   0.0    1.7  1  Asp_protease_2   Aspartyl protease
    0.00022   21.2   1.5    0.00044   20.2   1.5    1.5  1  zf-CCHC          Zinc knuckle
     0.0012   18.6   0.8     0.0023   17.7   0.8    1.5  1  zf-CCHC_2        Zinc knuckle
  ------ inclusion threshold ------
      0.012   15.8   0.5      0.025   14.8   0.5    1.5  1  zf-H2C2          H2C2 zinc finger
      0.028   14.2   0.0       0.17   11.6   0.0    2.2  2  Asp_protease     Aspartyl protease


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   9.3e-27   1.4e-23       5     105 .]    1370    1470 ..    1367    1470 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 9.3e-27
                  -EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT----.---HHHHHHH CS
   RT_RNaseH    5 pfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkyllskkslngrlarWale 101 
                  p+ l tD s+ gi++v+ q ++  + r+ af+S kls+a+ ny+++e e+lA v+a+++ r +l g  ft +tDhk l +ll++++l+gr+arW+++
  CDO71992.1 1370 PIWLVTDGSHGGIAGVVAQGDDFRRGRVAAFFSAKLSSAQMNYPVHEIEMLAGVEAMRRHRDILLGCTFTWVTDHKGLVHLLKQRNLSGRQARWLEH 1466
                  67899**************999999************************************************************************ PP

                  C-XX CS
   RT_RNaseH  102 Lsey 105 
                  +se+
  CDO71992.1 1467 ISEF 1470
                  **98 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.7   6.3e-19   9.5e-16       4      57 ..    1785    1838 ..    1783    1839 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 6.3e-19
  Integrase_H2C2    4 slrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57  
                      s r+ ++ +aH+ ++HlG +kt ++lr++++W+++ +dv+ky++sC tC+r+kp
      CDO71992.1 1785 SAREIVIAHAHSLLAHLGPHKTSSLLRDHVWWKSLLQDVQKYCDSCMTCKRSKP 1838
                      67999***********************************************98 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.6e-18   3.8e-15       1      99 [.    1336    1439 ..    1336    1440 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.6e-18
  RT_RNaseH_2    1 Wteeqekafeklkealtsapv.....LahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrh 91  
                   W+ ++++af+++k+ + s+       L +  +  p+ l tD S+ gi++v  q dd ++ r+ af+S kls+a+ ny+++e e+lA v+a+++ r+
   CDO71992.1 1336 WDYTHQRAFDEIKRLVHSHREhhrvpLDYSPEAPPIWLVTDGSHGGIAGVVAQGDDFRRGRVAAFFSAKLSSAQMNYPVHEIEMLAGVEAMRRHRD 1431
                   999*************987651111255666677999*******************999************************************* PP

  RT_RNaseH_2   92 yllgrkft 99  
                   +llg +ft
   CDO71992.1 1432 ILLGCTFT 1439
                   *****998 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   4.6e-17   6.9e-14      72     219 ..    1157    1270 ..    1127    1273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 4.6e-17
                  EEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTT CS
       RVT_1   72 lklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaD 168 
                  + +D k+a++++++e +  + ta+++p                          g  ++ +l qG  ++ ++++ +mn+++ +       v++ +Y D
  CDO71992.1 1157 SLIDGKDAYEQIRVEPEHVERTAMTTP-------------------------DGNMVSLVLQQGDCNAVATYQSLMNHIFGPHIG----VFMDVYLD 1224
                  679************************.........................999*****************************7....9******* PP

                  EEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETT CS
       RVT_1  169 DililskskeelqelleaveewlkesglkinpeKtklvlftvkseevkyLG 219 
                  Di i+s++ e++ +++++v + l++ +l ++++K +++      +e+k+ G
  CDO71992.1 1225 DIAIYSDTLEDHVRHVRTVIDILRREQLYLSASKLHFL-----CREMKVIG 1270
                  **************************************.....69999888 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.2e-10   4.7e-07      19     132 ..     883     996 ..     869     999 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.2e-10
       RVP_2  19 pdvvlgtflvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLskn 117
                 p+ v+  + vn+ pa  L+dsG    F+s +++++l++kv +L++pl ++  v++s    ++     +e q+i       +++l ++D+iLg  +L ++
  CDO71992.1 883 PEPVVVVVNVNGHPARALLDSGSLSDFMSAKMAHQLGVKVFELEKPLPVHLAVQGSRAKINFGCRAVLEYQNIRDDRYFDVVNLLNYDLILGTPFLYQH 981
                 666778899*****************************************99988777666655555777766655556678899************** PP

       RVP_2 118 kanidcaekkvtltk 132
                 k+       +v++ +
  CDO71992.1 982 KVSFSFNPTAVVIGS 996
                 **9998888888766 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   1.4e-09   2.1e-06       2      95 ..     289     381 ..     288     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.4e-09
  Retrotrans_gag   2 lastslegaAks.wlkslvarsidasesWkdlkkaflktf...lpserkdqleeelsslrQgtesvreYvtrfktladqldevlteeakiekfla 92 
                     ++s +l+g+A + w++++++++++    W+ lk+ f + f   +p++++ q++e+l++ +Q+++svreYv+++++l   +   ++e + + k+ +
      CDO71992.1 289 HVSNFLKGNAYNfWVTTVESKNPQ---KWD-LKRLFVELFnycFPPDYRLQMRERLRRSSQRDRSVREYVHELESLFLAVG-LVSEREHVDKLWH 378
                     678899999976377888888888...674.444444444222566***********************************.7************ PP

  Retrotrans_gag  93 GLn 95 
                     GLn
      CDO71992.1 379 GLN 381
                     **8 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   8.3e-09   1.2e-05       3      90 ..     890     978 ..     888     980 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.3e-09
                      EEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-..EEEEEEEEEE.EETTEEEEEEEEEESSSSEEEEHHHH CS
  gag-asp_proteas   3 vkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangevea..krvrldsvkiggielrnvsavvlegelddlLLGldfL 90 
                      v++ng+p ++l+D+G  s ++s+++a +lg++  e +++  v+ a    +a    +  + ++ ++i+     + v++  + dl+LG+ fL
       CDO71992.1 890 VNVNGHPARALLDSGSLSDFMSAKMAHQLGVKVFELEKPLPVHLAVQGSRAkiNFGCRAVLEYQNIRDDR-YFDVVNLLNYDLILGTPFL 978
                      89*********************************99999999887654441034444466777776653.4666667778888888877 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.6e-07   0.00054       2      47 ..     889     934 ..     888     976 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.6e-07
  Asp_protease_2   2 pvtinGkpvrfllDTGasttlispelaeklglkvreseltvrvsga 47 
                      v++nG+p+r+llD+G+ + ++s ++a++lg+kv e+e +  v +a
      CDO71992.1 889 VVNVNGHPARALLDSGSLSDFMSAKMAHQLGVKVFELEKPLPVHLA 934
                     689*******************************999988887766 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   1.5   2.9e-07   0.00044       1      18 []     511     528 ..     511     528 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.9e-07
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 +kC+ C + GH+ rdCp+
  CDO71992.1 511 GKCFLCKKAGHFQRDCPE 528
                 59***************6 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.8   1.5e-06    0.0023       5      21 .]     512     528 ..     512     528 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-06
   zf-CCHC_2   5 vChiCgkkGHyIqdCPt 21 
                 +C +C+k GH+ +dCP+
  CDO71992.1 512 KCFLCKKAGHFQRDCPE 528
                 7***************6 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.5   1.7e-05     0.025       3      39 .]    1798    1834 ..    1797    1834 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
     zf-H2C2    3 ltHlGinkltallarkYhwlgiketvseVissCkaCq 39  
                  l HlG  k+ +ll+ ++ w+ + + v++ + sC +C+
  CDO71992.1 1798 LAHLGPHKTSSLLRDHVWWKSLLQDVQKYCDSCMTCK 1834
                  68**********************************7 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.17      27     120 ..     888     982 ..     878     986 .. 0.66
   2 ?   -0.8   0.0      0.86   1.3e+03     105     121 ..    1415    1431 ..    1401    1433 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  Asp_protease  27 invevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGv.GtkkilGrvhsaevklgdlflpvalsvledkevdlllGldllkrhq 120
                   + v+vng++ +a++dsG+ +  +s+k a + g++ +   +   +   v G +  +     a ++ ++      + v++  + dl+lG   l +h+
    CDO71992.1 888 VVVNVNGHPARALLDSGSLSDFMSAKMAHQLGVKVFELEKPLPVHLAVqGSRAKINFGCRAVLEYQNIRDDRYFDVVNLLNYDLILGTPFLYQHK 982
                   6799*************************999876544444444444433333333333444555555555556666666666666666666665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.86
  Asp_protease  105 kevdlllGldllkrhqv 121 
                    +e+++l G++ ++rh+ 
    CDO71992.1 1415 HEIEMLAGVEAMRRHRD 1431
                    689************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.50
# Mc/sec: 11613.68
//
Query:       CDO71993.1  [L=663]
Description: hypothetical protein BN946_scf184943.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4332.44
//
Query:       CDO71994.1  [L=550]
Description: hypothetical protein BN946_scf184943.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.6   0.2       0.52   10.4   0.1    2.0  2  EcoEI_R_C  EcoEI R protein C-terminal


Domain annotation for each model (and alignments):
>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.1   1.8e+03     105     151 ..     215     261 ..     188     285 .. 0.66
   2 ?   10.4   0.1   2.9e-05      0.52      36      97 ..     308     368 ..     293     372 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.1
   EcoEI_R_C 105 kfteeqrewLelildhiaangviel.ddldeapefkqkgglgkayklF 151
                 ++t++q e  +++l  + a+ v    +d+ +++   +    +++++ +
  CDO71994.1 215 SITDQQLELADCLLREYCAELVELYgADVIRPN-HHYATHTAEFVRDY 261
                 677999999999999998888766566665555.44444445555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 2.9e-05
   EcoEI_R_C  36 keLeekLkepppgitpealweayellekkvspq...ltdlidlirkiagldeeletrserveraf 97 
                 + L+e L++p + +  +  ++++e + +        l++l+d + +++++d+ l+++s r+ ra+
  CDO71994.1 308 RVLAEGLRQPAESVFHQTCRHMQEATSN----MrgtLQQLVDELEEAYYDDNVLLSFSPRAARAR 368
                 458888999999***********99944....335688***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4034.54
//
Query:       CDO71995.1  [L=581]
Description: hypothetical protein BN946_scf184943.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4054.79
//
Query:       CDO71996.1  [L=683]
Description: hypothetical protein BN946_scf184943.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.23   10.7  12.4       0.59    9.4  12.4    1.6  1  NOA36           NOA36 protein
        3.3    5.8  11.4       0.39    8.9   4.7    2.0  2  PAT1            Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.4   6.6e-05      0.59     206     302 ..      87     185 ..      76     191 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.6e-05
       NOA36 206 eknkaipcpkcgyetqetkdlslstrslkfgrqkq..adgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeeeee 302
                 + n+ +  p  ++    +k l l ++s +  r  q  ad+s dd++ ++  +y + + + a   +++d++++dd++d++ + d++e d+  + ++e+e 
  CDO71996.1  87 DGNRHPSAPSSKHSKVVAKPLVLLSKSASSYRAPQidADASSDDEHSSQPPKYRKRQITKALFRNDEDSSSQDDNQDNESSADENESDEAAKTDNEDEG 185
                 668888899999999999999987777766665541133444444444555566555555555666677777777666666666555555555555543 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.7   4.3e-05      0.39     242     379 ..      58     212 ..       2     225 .. 0.49
   2 ?    1.0   0.5     0.011        98     114     198 ..     301     385 ..     246     462 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 4.3e-05
        PAT1 242 a..............eqaqqapesakeqqqeq..eqa..aqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappa.kvqptqi.lqnpnr 320
                 +              +  ++++ ++++   ++  +++   +++++k  +kp+  l ++ s+  +p+  +  s++ e+++q+p+  k q t+  ++n + 
  CDO71996.1  58 QplppeweslvpgqgR--KKVKVDHQHPDDKDgnRHPsaPSSKHSKVVAKPLVLLSKSASSYRAPQIDADASSDDEHSSQPPKYrKRQITKAlFRNDED 154
                 1223333445555331..222222222222220022200222222333447777888877766666655555555444444433133444440445444 PP

        PAT1 321 laarlelsqkeqaaaqaapeqeakrqqssagkqaqiithpqqlaqlseeekaayLeeea 379
                  +++   +q+++++a+++++ ea ++++  +  +q+ ++p+ l +l  +e a +++ee+
  CDO71996.1 155 SSSQD-DNQDNESSADENESDEAAKTDNEDEGLEQLENNPRALEKLLADETAIFVDEET 212
                 44444.4444444455555566677777777789***********************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.011
        PAT1 114 ka.....sekaaaaelkevkkasqase.qkskpvrtgyekykepepipdlqvdaslWgvaekkaaasaaapevaaaaaslasasrkvlsle 198
                 k+     + +aaa+  +++k++s+a+   k+ p+r++  k++ ++ ip++q+ +++ g +++++++++ +p  a  +    ++ rk + l 
  CDO71996.1 301 KKkasknKVQAAASGVARSKQMSAAHGgLKAAPKRSSTSKHR-EDEIPKIQM-TDVGGSNTSREVHKPIKPLHAPLK----APVRKRMQLA 385
                 222222223333333333333333322033347777777766.556677764.455555555555554333322222....3345555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 3989.15
//
Query:       CDO71997.1  [L=1026]
Description: hypothetical protein BN946_scf184943.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-118  394.9   0.0   3.9e-118  394.4   0.0    1.3  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.4   0.0  2.2e-122  3.9e-118       1     324 []     276     592 ..     276     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: 394.4 bits;  conditional E-value: 2.2e-122
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 +kn +eL++++D+ l+sg+p++ ++ev + ge+           +e+++rd+l++i++l+g+p+f++ l++aPe++y+d+++++rvy +++tg+w+we+
  CDO71997.1 276 YKNCRELNTIVDEkLTSGRPRFIRREVILGGEV-----------FEFFYRDILQCIRALYGDPEFSGLLVFAPEKHYADTEHTTRVYFDVHTGKWWWET 363
                 89***********9*****************98...........**********************************99888**************** PP

     Plavaka  99 q..ieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLk 195
                 q  + e+   gat++p+i+ssDKT+l+ f g+k+ayPvY++iGn+pk+vrrk+sr++++llayLp ++l++i+ +k++r++  ++lfHac+a++l+pLk
  CDO71997.1 364 QkeL-EQRLPGATIIPIIISSDKTQLTAF-GSKTAYPVYMTIGNLPKDVRRKPSRRGQILLAYLPSSRLEHIT-NKAARRRSLANLFHACMAHVLAPLK 459
                 *544.44434*******************.******************************************7.6666666****************** PP

     Plavaka 196 eagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl..eeselrtreetlelleeaade...lkklwkeyglkgviep 289
                 +ag +g+ + ++dg +rr +pi+a+yi+DypEq+lvac+++g+Cpkct++++e+g+    +++lr+ ee+ e+l +  ++   ++++++++g+k+v++p
  CDO71997.1 460 TAGIDGIDVISGDGITRRGHPIFAMYIGDYPEQLLVACCKNGTCPKCTITRNEIGTGahLNHPLRDLEEIFEALDQLGNGaaaFSRACRDAGIKPVVNP 558
                 ******************************************************98545778************999866888**************** PP

     Plavaka 290 FwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 Fw+dlp++d+++++tpD+LHql++gv+k Hl++W+
  CDO71997.1 559 FWKDLPFVDVFRSITPDILHQLYQGVIK-HLISWL 592
                 ****************************.*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6972.46
//
Query:       CDO71998.1  [L=474]
Description: hypothetical protein BN946_scf184943.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3245.46
//
Query:       CDO71999.1  [L=461]
Description: hypothetical protein BN946_scf184943.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.001   18.5  13.8     0.0016   17.8  13.8    1.4  1  DUF3450          Protein of unknown function (DUF3450)
  ------ inclusion threshold ------
      0.011   14.7  21.9      0.015   14.2  21.9    1.1  1  CALCOCO1         Calcium binding and coiled-coil domain (CALC
      0.013   16.0  15.6      0.026   15.1  15.6    1.6  1  APG6_N           Apg6 coiled-coil region
      0.017   15.3  14.8      0.017   15.3  14.8    1.6  2  Tropomyosin_1    Tropomyosin like
      0.032   13.3  10.0      0.049   12.7  10.0    1.3  1  Atg14            Vacuolar sorting 38 and autophagy-related su
      0.051   13.9  14.9      0.082   13.2   6.1    2.6  2  DUF5082          Domain of unknown function (DUF5082)
      0.075   13.4  14.6       0.23   11.9  10.0    2.4  2  DUF4200          Domain of unknown function (DUF4200)
      0.075   10.5  22.1      0.014   12.9   9.0    2.0  2  DUF3584          Protein of unknown function (DUF3584)
       0.16    9.9  10.2       0.24    9.3  10.2    1.2  1  Prominin         Prominin
       0.16   12.3   7.1       0.68   10.3   0.4    2.5  2  DUF2175          Uncharacterized protein conserved in archaea
       0.46    9.3   4.3       0.58    9.0   4.3    1.2  1  LMBR1            LMBR1-like membrane protein
       0.46    9.3  22.5       0.75    8.6  10.8    2.2  2  Spc7             Spc7 kinetochore protein
       0.61   10.5   9.3       0.13   12.7   3.1    2.4  2  TSNAXIP1_N       Translin-associated factor X-interacting N-t
        0.9    9.3  23.5        5.3    6.8  23.5    2.0  1  ERM              Ezrin/radixin/moesin family
       0.93    9.5  16.2        4.2    7.4  16.2    2.0  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
       0.95    9.3   7.9         19    5.1   7.9    2.4  1  Nsp1_C           Nsp1-like C-terminal region
       0.96    9.6  26.2       0.23   11.7  14.7    2.4  2  ATG16            Autophagy protein 16 (ATG16)
        1.2    9.4   9.6       0.22   11.7   2.1    2.7  2  HemY_N           HemY protein N-terminus
        1.8    8.1  13.6        6.1    6.3  13.6    1.7  1  TMCO5            TMCO5 family
        2.1    8.0  23.5        4.2    7.0  12.2    2.4  2  Lebercilin       Ciliary protein causing Leber congenital ama
        2.7    6.7  10.5        4.3    6.1  10.5    1.3  1  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
        3.2    7.9   9.2        4.8    7.3   4.8    2.2  2  Cob_adeno_trans  Cobalamin adenosyltransferase
        3.5    7.9   7.4        4.2    7.6   6.0    1.9  1  DDE_Tnp_1_6      Transposase DDE domain
        3.6    7.8  14.3          2    8.6   5.4    2.3  2  Fib_alpha        Fibrinogen alpha/beta chain family
        3.6    7.6  14.1        4.3    7.4  10.9    2.6  2  DUF1043          Protein of unknown function (DUF1043)
        3.9    7.2  18.7        2.3    7.9  12.4    2.5  2  DUF745           Protein of unknown function (DUF745)
        4.8    7.5  12.4        2.1    8.7   3.3    2.6  2  BLOC1_2          Biogenesis of lysosome-related organelles co
        6.9    6.7  10.7        2.8    8.0   3.1    2.4  2  DUF1664          Protein of unknown function (DUF1664)
        9.1    4.1   9.5         12    3.6   9.5    1.2  1  V_ATPase_I       V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8  13.8   2.7e-06    0.0016      12     111 ..      50     149 ..      43     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.7e-06
     DUF3450  12 galaatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLe 110
                  a++++ld+a+k  + ++++ ++ q+  ++++  +++l+++ ++l+  ++ l++  +qle  ++++++  +++++ ++++e+ +r+l+ lle+  ++L+
  CDO71999.1  50 HAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELK 148
                 45589****************************************************************************************999998 PP

     DUF3450 111 q 111
                 +
  CDO71999.1 149 E 149
                 7 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  21.9   2.4e-05     0.015      75     271 ..      32     228 ..      14     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
    CALCOCO1  75 rkelesrveelkeelkesrekveeleekqkelerlseelaeeksalleakees...earirELEeDiktltqralekEteLeRlkerakkalaqrkeee 170
                  +e ++r  + ++  + ++  +++l + qk+l++++ ++ e+++al e + ++   e r + LE   + l +r+ + E +L+ l +    + + +   e
  CDO71999.1  32 DRERRRRCGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQrtlEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAE 130
                 34444455555554455555666777888999999999999999998766555222679999*******************99999999999999999* PP

    CALCOCO1 171 aerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeaenEallkelrslqerlaaSerkvegLkeeLssvaaqrdr 269
                 +er++l a le+  +el++  + l ++    +  d++vlqL ++i+    + ++     +++   l++ +s++e +a+   ++++L+ +L  + a +++
  CDO71999.1 131 NERRDLTALLETRTAELKEAQTYLSKVD---DISDSEVLQLVEKINSQIYQAASKIASDLQSSYGLQKKKSIREEAAVRLEQSTLLGPDLPRLLAVHNH 226
                 ****************998887776655...55789*****99998654444444444556666788899*********************99999888 PP

    CALCOCO1 270 tq 271
                  +
  CDO71999.1 227 QH 228
                 76 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1  15.6   4.1e-05     0.026       9     125 ..      47     167 ..      38     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.1e-05
      APG6_N   9 lLleeldkqleqaekerdaYeeflkklkkekkeeek.........qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98 
                 +Ll   ++ l++a+k  ++ ++  ++ ++                 +e  ++le   + l+k  ++l+  L++l k+++e++++l  +e+e ++l +  
  CDO71999.1  47 TLLHAAKQDLDTAQKHLQDSQRTVREQQNA-----LnesasaqrtLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALL 140
                 444444444444444444444444444433.....033334555556777888888999**************************************** PP

      APG6_N  99 erfwreynelqlelleleeeldsleaq 125
                 e    e +e q+ l++ ++  ds   q
  CDO71999.1 141 ETRTAELKEAQTYLSKVDDISDSEVLQ 167
                 ****************99998886665 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  14.8   2.7e-05     0.017      36     142 ..      41     151 ..      20     152 .. 0.88
   2 ?   -2.6   0.3       9.3   5.7e+03      55      87 ..     169     202 ..     154     210 .. 0.46

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
  Tropomyosin_1  36 eiksLtkknqqleeevekleeklkeakekaeesekkktnne....altrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdew 127
                    + + L++ ++++ +++++++++l+++++++ e++++  ++     +l+ + q+LE  +    k++++    L++ +++ +e++R+ ++ e+er + 
     CDO71999.1  41 NCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESAsaqrTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDL 136
                    56789999999****************99999887765555456689999********************************************** PP

  Tropomyosin_1 128 ekkyeeleekykeak 142
                       +e  ++++kea+
     CDO71999.1 137 TALLETRTAELKEAQ 151
                    *99999999999987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.3
  Tropomyosin_1  55 eeklkea.kekaeesekkktnnealtrkiqlLEe 87 
                     ek++ +  ++a++ +++ +++  l++k  + Ee
     CDO71999.1 169 VEKINSQiYQAASKIASDLQSSYGLQKKKSIREE 202
                    3333322022223333333333355555544444 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  10.0     8e-05     0.049      32     214 ..      61     231 ..      27     281 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8e-05
       Atg14  32 aklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrk 130
                 ++l+  + +++++ +++ e+ +++ +le++ +++   +  lk+++a+l+  l++l++  ++ ++++  + ++ + l + l +R+++l+ +q+ l++   
  CDO71999.1  61 KHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQTYLSKVDD 159
                 122222222222222222222233333334444444444444444444444444444444444444444444444444444666666666666666666 PP

       Atg14 131 kqiaklqdaikrieqklsslssktlesrsslcselaklyglrrtsyergkwvfskngeseesytIggiplpdlrdlnafpaeeI 214
                  + +++++ + +i  ++ +  sk+++        l + ygl++ +  r+     +     e+ t+ g+ lp+l +++++ ++++
  CDO71999.1 160 ISDSEVLQLVEKINSQIYQAASKIAS-------DLQSSYGLQKKKSIRE-----EAAVRLEQSTLLGPDLPRLLAVHNHQHDSV 231
                 66666665555555555555555554.......5555555555332222.....333344667788888888888887666654 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.4     0.046        28      29      55 ..      49      75 ..      47      84 .. 0.88
   2 ?   13.2   6.1   0.00013     0.082       5     103 ..      91     186 ..      87     198 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.046
     DUF5082 29 Lkeaktklsdekeslkqkkkklekpln 55
                L +ak+ l++++++l+++++ ++++ n
  CDO71999.1 49 LHAAKQDLDTAQKHLQDSQRTVREQQN 75
                889*****************9999887 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00013
     DUF5082   5 isklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnsse.sWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLen 102
                  ++l+  +a l++++a+le ++  L +ak++++ +  ++++++++l+  l +   ++  ke+++y +++ ++ +s  ++ + ++++ ++i +  +++++
  CDO71999.1  91 SQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTaEL--KEAQTYLSKVDDISDS--EVLQLVEKINSQIYQAASKIAS 185
                 5678889999************************************99998885344..4566666666655443..3444444444444444444444 PP

     DUF5082 103 q 103
                 +
  CDO71999.1 186 D 186
                 4 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   2.1     0.055        34      10      48 ..      44      82 ..      40      88 .. 0.89
   2 ?   11.9  10.0   0.00037      0.23       6      93 ..      71     158 ..      68     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.055
     DUF4200 10 evqealeakkeeiqrleealkqreeelekkeqeleedll 48
                 ++  l+a+k+++ + +++l++ ++ ++++++ l+e++ 
  CDO71999.1 44 TLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESAS 82
                5788999****************************9985 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00037
     DUF4200   6 remfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlk 93 
                 re++ +  + + ++  ++++ ++l+ + + l+k+ ++le dl++++k   e d+  +ra+ +  + + l + ++ae+k++++ ++++ 
  CDO71999.1  71 REQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQTYLSKVD 158
                 5555555566666777888999999999****************************************************99888765 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   5.6     0.014       8.6     481     528 ..      32      79 ..      14      82 .. 0.81
   2 ?   12.9   9.0   2.3e-05     0.014     825     986 ..      81     236 ..      77     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
     DUF3584 481 qeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqalee 528
                 ++e +++  + e l++ +++++++ d+a+++lq+ +r ++++++al+e
  CDO71999.1  32 DRERRRRCGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNE 79 
                 44555666789999******************************9987 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.3e-05
     DUF3584 825 eelesaaeeleqeltrliedtklerkklekerkalekqldqldenlrklrdllsklaelkldadaeqaegelaerlaaleelkrkre.rlsedvkkale 922
                 ++ ++ +ee  q+l+   + +k++ ++le +++ l+k++d++d +l++ + + + l +l + ++ae  e  ++  l++++++ +++  +l e+++ ++ 
  CDO71999.1  81 ASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKE--AQTYLSKVDDISDSEVlQLVEKINSQIY 177
                 56778899999*********************************************9998888877666..6666777777766553245566666666 PP

     DUF3584 923 rfkgvlkdksgsglaetweklreeestlsdkalelddarkllpaleelldvlvpqkrqalreqv 986
                 ++     +k +s+l  ++    +++s  ++ a++l++   l p+l +ll v   q +++l++ +
  CDO71999.1 178 QAA----SKIASDLQSSYGLQ-KKKSIREEAAVRLEQSTLLGPDLPRLLAVHNHQHDSVLVQIA 236
                 666....45588888888654.67777788888888888889**********999999999854 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.2   0.00038      0.24     228     362 ..      50     192 ..      41     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00038
    Prominin 228 dtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqa...lsnlCq.seeCskilssleiekldtskcl....dqlp 318
                 ++ ++ +  a ++l+   + ++e +++L++  + +  L + ++qL+    g k+++ q+   l+nl + + e + +l+++e+e+ d+ + l     +l+
  CDO71999.1  50 HAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLegdLNNLNKaKDEVDRALTRAENERRDLTALLetrtAELK 148
                 4555666666677777777888889999999999999999999999877777777666522266644435899999999999999999988888899** PP

    Prominin 319 nvdevlealeevletnlssivkeglarlneipekvknqtaevvp 362
                 + +++l+++++++++++ ++v++ ++++ +  +k++ ++++   
  CDO71999.1 149 EAQTYLSKVDDISDSEVLQLVEKINSQIYQAASKIASDLQSSYG 192
                 **********************************9999988765 PP

>> DUF2175  Uncharacterized protein conserved in archaea (DUF2175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4    0.0011      0.68      43      97 ..      51     106 ..      38     107 .. 0.80
   2 ?    4.8   1.3     0.055        34      41      97 ..     131     188 ..     122     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
     DUF2175  43 edaaaLleleevlneeivklkelerv.aedeevkkvleqkrkelEkaaakltkkle 97 
                 + ++ L++++++l++    ++e ++  +e+ +++++le++ ++lE++aa l+k++ 
  CDO71999.1  51 AAKQDLDTAQKHLQDSQRTVREQQNAlNESASAQRTLEERSQQLEGHAAGLKKRVA 106
                 556779999999988766666655544999*********************99885 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.055
     DUF2175  41 es..edaaaLleleevlneeivklkelervaedeevkkvleqkrkelEkaaakltkkle 97 
                 ++    +a+L + + +l+e  ++l ++  + +  ev +++e+++ ++ +aa+k+ ++l+
  CDO71999.1 131 NErrDLTALLETRTAELKEAQTYLSKVDDISD-SEVLQLVEKINSQIYQAASKIASDLQ 188
                 3333567778888999*************988.67889999999999999999988875 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.3   0.00094      0.58     205     306 ..      45     159 ..      21     276 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00094
       LMBR1 205 lyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks..nenkteeslaklekqlikalqkrertekqwkrlleka 301
                 l++ +   +++++ a++ l+d  + v+++++ ++es+  ++ lee  ++   ++a   k+  + +  +++l+k + ++ +al++ e++++ +  lle  
  CDO71999.1  45 LNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRvaQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETR 143
                 444455667889999999999999999999999999987777777777555555444444655555666666666666666666666666666666655 PP

       LMBR1 302 .lele..........d 306
                  +el+          d
  CDO71999.1 144 tAELKeaqtylskvdD 159
                 1122233333333331 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.6    0.0043       2.6     185     247 ..      31      95 ..       8      99 .. 0.87
   2 ?    8.6  10.8    0.0012      0.75     133     218 ..      90     186 ..      87     211 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0043
        Spc7 185 klqeaaeelesid..keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksele 247
                 + +e+++ + +++  ++ L++++++l+++++ ++  ++ + e q+ l+e++++  +l+e+ ++le
  CDO71999.1  31 RDRERRRRCGNCEtlNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLE 95 
                 456688889999988899***********************************999999999876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
        Spc7 133 RmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeele....klqeaaeeles......id.keeLeelreelaelkaeieek 218
                 R+q leg   gl++++++le d ++L+k ++e+d++l + e+e+ +l++ le    +l+ea++ l++      ++  + +e++ +++ ++ ++i++ 
  CDO71999.1  90 RSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLEtrtaELKEAQTYLSKvddisdSEvLQLVEKINSQIYQAASKIASD 186
                 8899999999999999999999999999999999999999999986655544000045554444433222211222223344444444444444443 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.1   0.00021      0.13      34      93 ..      39     115 ..      36     133 .. 0.71
   2 ?    0.7   2.0       1.1   6.6e+02      44     102 ..     115     174 ..     112     189 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00021
  TSNAXIP1_N  34 ieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessd................kraleleekreel 93 
                 + ++ +  +lL + K++ +++ +hl++sqr+ + +++ l +++s++ +                kr+ +le   ++l
  CDO71999.1  39 CGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALnESASAQRTleersqqleghaaglkKRVAQLEGDLNNL 115
                 88999999***************************999987777766666444444444444444444444443333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
  TSNAXIP1_N  44 LseIKkEYelyiahllesqreaqyl.kaklktlsessd..kraleleekreelralekeska 102
                 L++ K+E + ++   +++ r++ +l +++ ++l+e ++   ++++++++  e+ +l+++ + 
  CDO71999.1 115 LNKAKDEVDRALTRAENERRDLTALlETRTAELKEAQTylSKVDDISDS--EVLQLVEKINS 174
                 7788999999999999999999998644445555555555666677777..44444333332 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  23.5    0.0085       5.3       4     128 ..      53     170 ..      50     211 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0085
         ERM   4 erekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserke 102
                 +++ +  ++ L+  q  ++++q+aL+es    + L+e+++++e  a  L+++ a++e   ++l++++ + ++   + e++ r+        +   e + 
  CDO71999.1  53 KQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDL-------TALLETRT 144
                 445556677777777777777777777777777777777777777777777777777777776666555555555555555555.......55555555 PP

         ERM 103 eeaerLkeeleeareaeeeakeklle 128
                 +e ++ ++ l ++ +    +  +l e
  CDO71999.1 145 AELKEAQTYLSKVDDISDSEVLQLVE 170
                 55555555555555544444444444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   3.0      0.32     2e+02      27      88 ..      13      80 ..       5      90 .. 0.54
   2 ?    7.4  16.2    0.0068       4.2      11     134 ..      48     171 ..      42     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.32
  CENP-F_leu_zip 27 enLerelemseenqekvileaEtska..evet....lkeeieelaeelreleldLvalrsekeeLeke 88
                     +L+++  +s ++ ++v+++ E  +    +et    l++ ++ l +  ++l+    ++r++++ L+++
      CDO71999.1 13 GRLDSDQTTSPRHINHVKRDRERRRRcgNCETlntlLHAAKQDLDTAQKHLQDSQRTVREQQNALNES 80
                    56666666666777777777776664335666333334445555555555555555566666666443 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0068
  CENP-F_leu_zip  11 kLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnss 105
                      L +++++ d  + + +  +r + ++++ +++      t  +  ++l+ +   l+++  +le dL++l + k+e+++ l    ++  +L +l ++
      CDO71999.1  48 LLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLET 142
                     5778888888889999999999999999999999999999999999************************************************* PP

  CENP-F_leu_zip 106 lenlleekEqekvqmkeeskaaveeLqtq 134
                      +  l+e+     ++ + s+++v +L   
      CDO71999.1 143 RTAELKEAQTYLSKVDDISDSEVLQLVEK 171
                     ******99999999999999999988655 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.9     0.031        19      19     106 ..      44     138 ..      41     159 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.031
      Nsp1_C  19 tldelinkWtteLeeqekeFeeqakkvneWDrvLvengekIskLysevle.......aeqeqnkidqeLeyiesqqdeLeslLdnyEkeleells 106
                 tl+ l++  +++L++++k+ ++   +v+e  ++L e+ +  + L +   +        ++  ++++  L+ +++ +de ++ L++ E+e  +l +
  CDO71999.1  44 TLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQleghaagLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTA 138
                 56666666667777777777777777777777777776544444443333000100045555666777777777777777777777776665554 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  14.7   0.00037      0.23      52     154 ..      21     120 ..       8     123 .. 0.82
   2 ?   10.4   6.4   0.00091      0.56      79     154 ..     101     155 ..      97     170 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
       ATG16  52 ksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelreke 150
                 +s+++ +  k+++++    ++  ++++l+++l++ +++l +++k  ++++  ++e +++l +  +  ++ eer ++le + a l+++++++e  l+ ++
  CDO71999.1  21 TSPRHINHVKRDRERR---RRCGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLN 116
                 3333333333333333...6788999******************************************************************9999998 PP

       ATG16 151 klvq 154
                 k+ +
  CDO71999.1 117 KAKD 120
                 8755 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00091
       ATG16  79 leqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq 154
                 l++++aql  +l +l k++ e    l+++++e ++l + l++++++l+e+++                      + 
  CDO71999.1 101 LKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQT---------------------YLS 155
                 4555566666666666666666666666666666666666666666665554.....................444 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.1   0.00036      0.22      49     101 ..      30      84 ..       7      90 .. 0.77
   2 ?    0.9   1.3      0.84   5.2e+02      75     105 ..     115     147 ..      85     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
      HemY_N  49 rwrrrrrerkarealseGlialaeGdfarAekaaakaaklsea..pllayllaAq 101
                 ++ r+rr+r ++  +++ l++ a+ d  +A+k+++++++  ++   +l+  + Aq
  CDO71999.1  30 KRDRERRRRCGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREqqNALNESASAQ 84 
                 34578899999***************************99866345555555554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.84
      HemY_N  75 farAekaaakaaklsea..pllayllaAqAaqa 105
                   +A+ +  +a+ ++e+  + l++ll+ ++a++
  CDO71999.1 115 LNKAKDEVDRALTRAENerRDLTALLETRTAEL 147
                 45777777777777766677799****999986 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  13.6    0.0099       6.1      50     139 ..      69     159 ..      46     212 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0099
       TMCO5  50 eedeeenfsenekedalkeLeletaklekkneiLlkevveLqkkisrkeskqddlek..etlkqkleelkvklqkseescaeqekelakvee 139
                 +   e++ + ne   a + Le+ + +le + + L k v++L++ ++++++ +d++++  +  +++  +l++ l+  ++ ++e +  l kv +
  CDO71999.1  69 T-VREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRalTRAENERRDLTALLETRTAELKEAQTYLSKVDD 159
                 2.23445667888888888******************************9999999933333444445566666666666666677777766 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.4     0.015         9      56     108 ..      43      95 ..      30      99 .. 0.91
   2 ?    7.0  12.2    0.0068       4.2      13     125 ..      91     206 ..      88     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
  Lebercilin  56 aeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklk 108
                 + L  ll+  ++++ + +++l +sq ++re+++ l+e+ ++ + l++  ++l+
  CDO71999.1  43 ETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLE 95 
                 578899********************************999999999999986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0068
  Lebercilin  13 ikeLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekk.lkekeaellrlkdklk.klkk 109
                  ++L+  +a l++++++l+ ++  L++ +   ++aL++ e+++ +L  ll+ +++E++  ++ l k  +  ++   + + + +++++++ +k+  +l++
  CDO71999.1  91 SQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQTYLSKVDDISDSEVLQlVEKINSQIYQAASKIAsDLQS 189
                 5788999999********************************************************998766544440455577777666554312332 PP

  Lebercilin 110 ...LsedknLaereeLqkk 125
                    L ++k+   ree + +
  CDO71999.1 190 sygLQKKKSI--REEAAVR 206
                 3236666666..5555555 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.5    0.0069       4.3     136     260 ..      26     146 ..      17     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0069
  Fmp27_WPPW 136 tdegdkiqvdekrispFgnektHdCilgkendpervqkelleeRleeleeqiekleekleelelkseke......deelkeeieelekeikelkeklef 228
                 +++   ++ d++r ++ gn +t + +l+++++  ++ ++ l++ +++++eq + l+e+ + + + +e++       + lk+++ +le ++++l+++++ 
  CDO71999.1  26 INH---VKRDRERRRRCGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSqqleghAAGLKKRVAQLEGDLNNLNKAKDE 121
                 444...366777888999999999999999999999999999999999999997777777666666663233343556666666666666666666666 PP

  Fmp27_WPPW 229 letlledlkeseesse...eeeskskelsaastse 260
                 ++++l++ ++++++ +   e          ++t+e
  CDO71999.1 122 VDRALTRAENERRDLTallE----------TRTAE 146
                 66666666655543224331..........22222 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.8    0.0078       4.8      11     128 ..      21     128 ..      16     160 .. 0.54
   2 ?    2.5   0.7      0.24   1.5e+02      40      93 ..     148     209 ..     126     213 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0078
                      XXXXXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS-- CS
  Cob_adeno_trans  11 TslvggervsKddprveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpp 104
                      Ts  + + v++d  r +  G+++ ln ++  a++ l+    +++++L++ q+ + + +++l    ++ ++++  ee+ ++le     l++++ +
       CDO71999.1  21 TSPRHINHVKRDRERRRRCGNCETLNTLLHAAKQDLD----TAQKHLQDSQRTVREQQNALN---ESASAQRTLEERSQQLEGHAAGLKKRVAQ 107
                      4445667899999999999********9999995553....455556665555555555553...12222222233344455554444444444 PP

                      EESEEES-SSHHHHHHHHHHHHHH CS
  Cob_adeno_trans 105 lksfilpggspaaaalhvaRtvcR 128
                      l+   l  ++   a+ +v R+++R
       CDO71999.1 108 LEGD-L--NNLNKAKDEVDRALTR 128
                      4321.1..1233344444444444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.24
                      HHHHHHCTTT....THHHHHHHHHHHHHHHHHHHHHHT.....-BTCCG-S--HHHHHHHHH CS
  Cob_adeno_trans  40 glarallaee....eeelkeaLeeiqneLfdlgaelatp....ekkkekkkiteeeveelek 93 
                        a+++l++     ++e+ + +e+i +++ ++ +++a++       ++kk+i+ee+  +le+
       CDO71999.1 148 KEAQTYLSKVddisDSEVLQLVEKINSQIYQAASKIASDlqssYGLQKKKSIREEAAVRLEQ 209
                      33444443335556778899999999999999999997777763445556677665667776 PP

>> DDE_Tnp_1_6  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.0    0.0068       4.2      13      93 ..      21     103 ..      14     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0068
  DDE_Tnp_1_6  13 eskekgngykrevavyrlkdCrgCplreqCtkkkkgrqltirpelselaekarer....ikseegkaeykkRaitvEgvfaqikr 93 
                  +s  + n+ kr ++  r+++C +C++ +   ++ k+   t +++l++ ++++re+     +s+ +++  ++R+++ Eg+ a +k+
   CDO71999.1  21 TSPRHINHVKRDRE--RRRRCGNCETLNTLLHAAKQDLDTAQKHLQDSQRTVREQqnalNESASAQRTLEERSQQLEGHAAGLKK 103
                  45556677788887..99**********9999977777777777777777777774444789999**************999886 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.4    0.0032         2      38     120 ..      43     128 ..      30     132 .. 0.77
   2 ?    8.2   4.0    0.0044       2.7      27     104 ..     102     180 ..      98     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0032
                 CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  38 ekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqk 120
                 e+l+  l+ +++   +a+++ ++ + ++re+q+  +++   ++++++ s++le + + lk+++ + e  +++L +  ++ ++ +++
  CDO71999.1  43 ETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESasaQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTR 128
                 55666667777777777777777777777766666654445789*********************999999999988888777766 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0044
                 CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH.HHH CS
   Fib_alpha  27 lkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe.sni 104
                 +k   +++ dl++l++  +e+ +  + ae+  ++++  l+ + ++ k+ +++++k+ +  ++e+l+l e+i++q+ +  
  CDO71999.1 102 KKRVAQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQTYLSKVDDISDSEVLQLVEKINSQIyQAA 180
                 4555666777888888888888888888888889999999999999999***************999999999985543 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.7     1e+03      28      49 ..      44      65 ..      36      66 .. 0.80
   2 ?    7.4  10.9    0.0069       4.3      20      94 ..      67     140 ..      62     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.7
     DUF1043 28 klekelekakaeleeqkqeled 49
                +l++ l +ak+ l++ +++l+d
  CDO71999.1 44 TLNTLLHAAKQDLDTAQKHLQD 65
                6777888999999999999876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0069
     DUF1043  20 nsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeLlp.eleeqelfqqkkl 94 
                 ++++++q++  +e  +a+ +lee  q+le H a  ++ +++l+ d ++L++   +   +L+  e e  +l  ++ l
  CDO71999.1  67 QRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALTRaENERRDL--TALL 140
                 7889**********************************************99999999996533333333..3333 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  12.4    0.0038       2.3      54     135 ..      46     127 ..      40     149 .. 0.85
   2 ?    2.1   2.3      0.23   1.4e+02      68     151 ..     130     187 ..     123     211 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0038
      DUF745  54 eAaLaGKqqlveqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqela 135
                 ++ L++ +q ++  ++ l++ ++ v+e++++l++s ++ ++ ++ ++q + +++ lk+ +++ +  l+n++++++++ + l 
  CDO71999.1  46 NTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRALT 127
                 56788888899999********************************************999999999999999999887774 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.23
      DUF745  68 eqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqelaek..tqlleaAkkRveeL 151
                 e+e r+  a ++  +++l+++++ ++ + +                            ++++   +l ek  +q+ +aA k +  L
  CDO71999.1 130 ENERRDLTALLETRTAELKEAQTYLSKVDD----------------------------ISDSEVLQLVEKinSQIYQAASKIASDL 187
                 444444444444444444444444444444............................4444333333332223333333333333 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.3    0.0035       2.1      26      94 ..      43     111 ..      38     113 .. 0.94
   2 ?    3.7   2.2      0.13        78      21      73 ..     111     163 ..     109     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0035
     BLOC1_2  26 eklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEak 94 
                 e+lN+  ++  ++l+++ ++l+++   ++e++++l++  +    +e++ ++Le  ++ L + + +LE  
  CDO71999.1  43 ETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGD 111
                 788999999999******************************************************965 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.13
     BLOC1_2  21 dyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekq 73 
                 d++ L+k   ++ +  +  +++  +l++ le   ++ +e q yl+++d+i ++
  CDO71999.1 111 DLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQTYLSKVDDISDS 163
                 566677777777777788888888899999999999999***********764 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.1    0.0045       2.8      43     121 ..      42     116 ..      35     119 .. 0.63
   2 ?    6.8   1.9     0.011       6.5      48     119 ..     106     178 ..      98     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0045
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 +e++ + l   +++l ++++hL++   +v +++++ +e     ++   +++e  ++++     +k+ v +le+ l++++
  CDO71999.1  42 CETLNTLLHAAKQDLDTAQKHLQDSQRTVREQQNALNE----SASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLN 116
                 55555555555556666666655554444444443333....3334456778888888899999999999999988886 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves.vkeavegleskler 119
                  qle   ++l+++k++  + + r +++  + +++ +  ++e++e++  ls++++ ++s v ++ve+++s++ +
  CDO71999.1 106 AQLEGDLNNLNKAKDEVDRALTRAENERRDLTALLETRTAELKEAQTYLSKVDDISDSeVLQLVEKINSQIYQ 178
                 588888899*******************************************999874499999999999976 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   9.5      0.02        12      28     136 ..      35     143 ..      12     211 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.02
  V_ATPase_I  28 evrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeee 125
                 + rrc + e   ++l++  ++l++a+ + ++ ++++ +++++ l+e  +  ++lee+ ++l+ ++  lkk++ +l+   + l+kak+ ++++ ++ e+e
  CDO71999.1  35 RRRRCGNCETLNTLLHAAKQDLDTAQKHLQD-SQRTVREQQNALNESASAQRTLEERSQQLEGHAAGLKKRVAQLEGDLNNLNKAKDEVDRAlTRAENE 132
                 4578888877777777766665555544444.7778888888899999999999999999999999999999999999999999999888774444443 PP

  V_ATPase_I 126 eeseeeeeeke 136
                 +++ ++  e++
  CDO71999.1 133 RRDLTALLETR 143
                 33222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1811  (0.10101); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.91u 0.38s 00:00:01.29 Elapsed: 00:00:00.50
# Mc/sec: 2758.29
//
Query:       CDO72000.1  [L=517]
Description: hypothetical protein BN946_scf184943.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-05   24.4   0.5    7.7e-05   23.4   0.5    1.5  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.5   4.3e-09   7.7e-05       2      68 ..      32      96 ..      31     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.3e-09
  GPI-anchored  2 sPssgevvtagkpvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpasles 68
                  sP++g+vv+a++pv+i+W++s    ++++++L+a s     ++    s+++ ++gsy+ +++++ ++
    CDO72000.1 32 SPTKGQVVDASQPVNISWDTSCLNTSAIDIYLYAPSA--ARPIIHGWSNVNYKAGSYSANIQPGWWN 96
                  8*******************99888*********999..788888899999888***9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3597.99
//
Query:       CDO72001.1  [L=1099]
Description: hypothetical protein BN946_scf184943.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-13   50.1   0.0    5.6e-13   48.9   0.0    1.6  1  PARP             Poly(ADP-ribose) polymerase catalytic domain
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.062   13.0   0.0    1.7  1  UQ_con           Ubiquitin-conjugating enzyme
        7.5    6.7   6.9        3.2    7.9   3.5    2.2  2  Opiods_neuropep  Vertebrate endogenous opioids neuropeptide


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   9.4e-17   5.6e-13      48     125 ..     660     744 ..     637     768 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 9.4e-17
                 -.......EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTSSSEEEBSSHHHHH.GGG--BSSS..-EEEEEEEEEE--SEEEES CS
        PARP  48 n.......rrlLfHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSa.nYcktsekk..gsglllLaeValGdikelt 125
                 n         ++fHGs  +n++si+ +GL   + ++ v+G  fG G+YfA+d ++S+  Y+ +++++  +s++   a+Val++i +l 
  CDO72001.1 660 NpracefpALYAFHGSAAKNWHSIIRHGL---WFKTVVNGRAFGHGVYFAKDGAVSLsGYSAAASSHwrNSAIKATACVALAEIVNLP 744
                 24445555889******************...99**********************95677775554225666899999999988775 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.062      49     111 ..     980    1051 ..     974    1081 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
                  EEEE--TTTTTS--EEEESST-SCTTBE.TTSBB......-CGGGSTTT..--TTSHHHHHHHHHHHHHHS- CS
      UQ_con   49 lelefpedYPlkpPkvkfvtkifHPnvd.ksGev......cldiLkeek..WspaltlesvllsiqsLlaep 111 
                  +e++fp ++P++pP +++ ++ f P ++   G++      c+d+L  +    + +++++ +ll+i   +++ 
  CDO72001.1  980 FEIRFPATFPHSPPFFRILKPRFLPFIQgGGGHItgggsmCMDLLTADAtcLTVSVSISAILLQIKLAISNL 1051
                  89******************9999988755444333333399999966555666777788888777666544 PP

>> Opiods_neuropep  Vertebrate endogenous opioids neuropeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.5   0.00054       3.2       2      25 ..     448     471 ..     448     481 .. 0.94
   2 ?   -3.4   0.1       1.9   1.1e+04      37      46 ..     759     768 ..     757     768 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00054
  Opiods_neuropep   2 CqkdCllCayklqdqqksfntlvC 25 
                      C + Cl C+++l++  ++ ++ vC
       CDO72001.1 448 CPRYCLVCHQQLKEDLDALKPYVC 471
                      99********************** PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
  Opiods_neuropep  37 keWelCkkal 46 
                      +eW +C+ ++
       CDO72001.1 759 TEWIVCRYLM 768
                      79****9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 7534.22
//
Query:       CDO72002.1  [L=210]
Description: hypothetical protein BN946_scf184943.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   41.3   0.0    2.3e-10   40.3   0.0    1.5  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.3e-14   2.3e-10     137     264 .]      12     208 ..       4     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.3e-14
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei 233
                 +Ki+D G+ k  e+   +t+++ t+  +APEv  + + +k++D+WslG+++    +  ++ + +  +++   +l +l + + ++g    ++++p+ +++
  CDO72002.1  12 VKIGDVGIDKVDEH---FTEVIETPPLRAPEVAIGARWGKPADIWSLGCTVRHSSSSVEIVEMSLLTSSLVLQLYELYMGRTMFGknIRDMEVPTMHTM 107
                 89999999776544...89*******************************************8888888888888888888888855555666666666 PP

                 ......................................................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 234 ......................................................................seeakdllkkllkkdpkkRltaeellqhp 262
                                                                                        + + d+l+  ++ dp kR t++ellqhp
  CDO72002.1 108 mlgdyppeliargkardeffnpdgqpitllicvticytdglsgprvgsmklpperrvpfdkavrerdtpdASLFADFLRLTFALDPDKRATCRELLQHP 206
                 *********************************************************************9999************************** PP

                 GG CS
     Pkinase 263 yl 264
                 +l
  CDO72002.1 207 WL 208
                 *7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1492.20
//
Query:       CDO72003.1  [L=271]
Description: hypothetical protein BN946_scf184943.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-79  265.1  15.4    5.5e-79  264.5  15.4    1.3  1  Peptidase_A4  Peptidase A4 family


Domain annotation for each model (and alignments):
>> Peptidase_A4  Peptidase A4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5  15.4     3e-83   5.5e-79       1     209 []      66     268 ..      66     268 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.5 bits;  conditional E-value: 3e-83
  Peptidase_A4   1 snwaGavlespesgftsVtgtftvPklslpsggdesaeysasawVGiDGaadtcssallqaGvdftvdsnGeqsydawyewyPayavdfsglavsaG 97 
                   snw+Gavl + +++++sVt+tftvP+++ psgg+   ++sasawVGiDG  dtc+sa+lq+Gvdftv+  +++s+dawyew+Pa+a dfsg++v+aG
    CDO72003.1  66 SNWSGAVLVAGSGTYKSVTATFTVPTPREPSGGRG--THSASAWVGIDG--DTCGSAILQTGVDFTVS-GSSVSFDAWYEWFPAAAFDFSGFTVRAG 157
                   7*********99*********************95..689*********..*****************.888************************* PP

  Peptidase_A4  98 DsvtvtvtatsatsgtvtieNlstgqsvtktlsapssklcgqsAeWivEdfesgg.lvplanFgtvtFtdasattsdgksvglsgatiidieqngtv 193
                   Ds+t+tvta+s+tsgt+t+ N+stgq+v++++s ++ +lc+++AeWivEdfe++g lvplan+gtvtFt+asa ts+g+svg+sgatiid+eqng+v
    CDO72003.1 158 DSITATVTASSTTSGTATLINHSTGQQVSHSFSRQP-ALCQENAEWIVEDFEENGgLVPLANWGTVTFTGASAGTSSGTSVGPSGATIIDLEQNGSV 253
                   ************************************.***************9999***************************************** PP

  Peptidase_A4 194 ltsvevsgdsevtvsy 209
                   ltsv++sg+s vtv+y
    CDO72003.1 254 LTSVSTSGSS-VTVEY 268
                   ******9999.***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1918.00
//
Query:       CDO72004.1  [L=66]
Description: hypothetical protein BN946_scf184943.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.1    9.3   6.5       0.54   10.3   0.9    2.0  2  Bac_chlorC  Bacteriochlorophyll C binding protein


Domain annotation for each model (and alignments):
>> Bac_chlorC  Bacteriochlorophyll C binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.8     0.006   1.1e+02      50      66 ..       6      22 ..       3      28 .. 0.82
   2 ?   10.3   0.9     3e-05      0.54      32      71 ..      26      64 ..      21      66 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.006
  Bac_chlorC 50 sgggsssglrgSSPevs 66
                s+gg++sg+++SS e+s
  CDO72004.1  6 SRGGAASGAKASSAETS 22
                57889999*****9977 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 3e-05
  Bac_chlorC 32 envgkttkrlnkNaypslsgggsssglrgSSPevsgyakP 71
                 + +k+ k   k a ps +gg+++ ++ gS P+ +g ++P
  CDO72004.1 26 TSQAKAGKDAAKDALPSRTGGAATRNASGSPPK-AGAKTP 64
                5678999999********************999.776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 503.06
//
Query:       CDO72005.1  [L=1409]
Description: hypothetical protein BN946_scf184943.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-26   90.3   0.1    6.9e-07   29.8   0.0    5.6  5  Ank_2        Ankyrin repeats (3 copies)
    2.4e-18   66.2   0.2    0.00017   22.1   0.0    6.9  7  Ank_4        Ankyrin repeats (many copies)
    6.5e-18   63.0   0.1     0.0093   16.4   0.0    8.3  8  Ank_3        Ankyrin repeat
    7.8e-15   54.8   0.9     0.0028   17.9   0.0    7.0  7  Ank_5        Ankyrin repeats (many copies)
    6.3e-14   51.7   2.2      0.036   14.5   0.0    6.3  6  Ank          Ankyrin repeat
  ------ inclusion threshold ------
      0.029   14.9   0.2         64    4.2   0.0    4.1  3  DUF1843      Domain of unknown function (DUF1843)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.9e-08   5.8e-05       3      76 ..     508     593 ..     506     601 .. 0.76
   2 !   16.5   0.0   3.1e-06    0.0092      51      80 ..     683     712 ..     670     715 .. 0.86
   3 ?    0.7   0.0      0.28   8.2e+02      19      48 ..     957     992 ..     949    1018 .. 0.67
   4 !   11.6   0.0   0.00011      0.33      23      83 .]    1029    1102 ..    1008    1102 .. 0.73
   5 !   29.8   0.0   2.3e-10   6.9e-07      20      74 ..    1148    1205 ..    1111    1211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.9e-08
       Ank_2   3 lAakngnlelvklLl..egadpn..k.ngktaLhyAakngnleivklLleh....ad..ndgrtpLhyAarsghleivklLlek.g 76 
                  A+ +g++  v  ++   ++d+n  +  g+taL++A+++ ++ei+  L+++    +    dgrt+Lh+Aa+ + + +v+ Ll++  
  CDO72005.1 508 KAIVSGDPASVAKIVsaGETDLNrrDhVGRTALQVAIMSKDVEIACDLIDAgarmTSriVDGRTALHLAAQLDLPVVVRKLLDRsA 593
                 5666777755666665555888886469************999988888867665226888*********9999999999997633 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.1e-06
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadin 80 
                 ++  tpLhyA+ sg+l +v+ Ll kgad++
  CDO72005.1 683 DYLFTPLHYAVISGSLGAVDELLAKGADPK 712
                 5678*******************9****97 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.28
       Ank_2  19 gadpn...k...ngktaLhyAakngnleivklLleh 48 
                 +adpn       ++  +L+ Aa+ g l ++++L ++
  CDO72005.1 957 KADPNapyApdkFETPILWEAARTGALGLIQYLSSE 992
                 566666541445666666688888877888888765 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00011
       Ank_2   23 nkngktaLhyAakngnleivklLle..h........ad..ndgr.tpLhyAarsg.hleivklLlekgadinlkd 83  
                  n+++++a+ +A++++ le++k+L +            +  + g   +L++Aa +g  ++++++Ll +g+  + +d
  CDO72005.1 1029 NEFNESAITTAVIGNELEALKALNNlrSvqmesalmSRiqYAGLnHILIAAA-WGcTPDMFDYLLSQGIRATDTD 1102
                  34779**********99*******9651555566652255556614666666.75258*******8899888765 PP

  == domain 5  score: 29.8 bits;  conditional E-value: 2.3e-10
       Ank_2   20 adpnkngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLle 74  
                    +    +t+Lh+A+k+++l +v+ Ll+         d++g t+Lh+A++ + +ei++l  +
  CDO72005.1 1148 GAL----NTPLHIAVKQTSLPTVRQLLQSkapvftlRDQQGSTALHIAVKRSLSEIARLVTD 1205
                  233....5*******************8557887866699*********99999*9997654 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-05      0.08       5      55 .]     506     556 ..     503     556 .. 0.94
   2 !   10.0   0.1   0.00034         1       2      44 ..     537     578 ..     537     578 .. 0.94
   3 !   12.3   0.0   6.6e-05       0.2       3      27 ..     687     711 ..     686     720 .. 0.93
   4 ?    2.0   0.0      0.11   3.3e+02      22      54 ..     955     989 ..     954     989 .. 0.75
   5 ?   -3.8   0.0         6   1.8e+04      33      54 ..    1030    1051 ..    1011    1051 .. 0.68
   6 ?    3.6   0.1     0.034     1e+02       7      48 ..    1077    1118 ..    1071    1123 .. 0.80
   7 !   22.1   0.0   5.6e-08   0.00017       2      46 ..    1151    1195 ..    1150    1202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
       Ank_4   5 LhyaaisgrlelvrlLlekg.adinaqdnrsGetalhiAakrgnveilklLl 55 
                 L++a+ sg+  +v+ +++ g  d+n++ +  G+tal+ A++  +vei+  L+
  CDO72005.1 506 LFKAIVSGDPASVAKIVSAGeTDLNRR-DHVGRTALQVAIMSKDVEIACDLI 556
                 899****************88******.999***************998776 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00034
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 +taL  a++s ++e++  L++ ga    +   +G+talh Aa+
  CDO72005.1 537 RTALQVAIMSKDVEIACDLIDAGARMTSR-IVDGRTALHLAAQ 578
                 699**********************9999.788********85 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6.6e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadi 27 
                 t+Lhya+isg l +v+ Ll+kgad+
  CDO72005.1 687 TPLHYAVISGSLGAVDELLAKGADP 711
                 79*********************97 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.11
       Ank_4  22 ekgadinaq..dnrsGetalhiAakrgnveilklL 54 
                 +++ad+na   +++   + l+ Aa++g +  +++L
  CDO72005.1 955 AQKADPNAPyaPDKFETPILWEAARTGALGLIQYL 989
                 6799999999445555556777****999999987 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 6
       Ank_4   33 rsGetalhiAakrgnveilklL 54  
                  +  e+a+  A+ ++ +e+lk L
  CDO72005.1 1030 EFNESAITTAVIGNELEALKAL 1051
                  4556666666666666666655 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.034
       Ank_4    7 yaai.sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48  
                   aa+  +  ++ ++Ll++g+    + + +G++  h+ a +g+ 
  CDO72005.1 1077 IAAAwGCTPDMFDYLLSQGIRATDT-DVRGWNVYHMLAAHGQS 1118
                  4555345568999********9999.999***99999999975 PP

  == domain 7  score: 22.1 bits;  conditional E-value: 5.6e-08
       Ank_4    2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46  
                  +t+Lh a+++  l++vr Ll+++a +    + +G talhiA+kr+
  CDO72005.1 1151 NTPLHIAVKQTSLPTVRQLLQSKAPVFTLRDQQGSTALHIAVKRS 1195
                  69***********************88887899*********997 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0045        13       2      26 ..     536     559 ..     535     561 .. 0.91
   2 !   11.3   0.0   0.00014      0.41       1      27 [.     568     593 ..     568     597 .. 0.89
   3 !   16.4   0.0   3.1e-06    0.0093       3      29 ..     686     711 ..     684     713 .. 0.92
   4 ?   -0.8   0.0       1.2   3.7e+03      12      30 ..     898     916 ..     896     917 .. 0.82
   5 ?   -1.5   0.0       2.1   6.4e+03       5      23 ..     973     991 ..     970     997 .. 0.78
   6 ?    0.5   0.0      0.47   1.4e+03       7      27 ..    1076    1096 ..    1071    1098 .. 0.81
   7 !   11.2   0.0   0.00015      0.45       3      26 ..    1151    1173 ..    1149    1176 .. 0.88
   8 ?    3.8   0.0     0.039   1.2e+02       2      20 ..    1184    1202 ..    1183    1210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0045
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G+t+L +A++s ++ei++ L++  g
  CDO72005.1 536 GRTALQVAIMSKDVEIACDLID-AG 559
                 9***************999999.56 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G+t+LhlAa  + + +v+ Ll+ + a
  CDO72005.1 568 DGRTALHLAAQLDLPVVVRKLLD-RSA 593
                 69********************9.554 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 3.1e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  tpLh+A+ sg+l  v+ Ll  kgad+
  CDO72005.1 686 FTPLHYAVISGSLGAVDELLA-KGADP 711
                 59***********99******.9***8 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.2
       Ank_3  12 sgnleivkfLlenkgadvn 30 
                 ++++++++ L++  ga ++
  CDO72005.1 898 YDRPAMLDELIRRTGAGIY 916
                 78999*******8888776 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.1
       Ank_3   5 pLhlAarsgnleivkfLle 23 
                 +L +Aar g l ++++L  
  CDO72005.1 973 ILWEAARTGALGLIQYLSS 991
                 3559*****9999999965 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.47
       Ank_3    7 hlAarsgnle.ivkfLlenkga 27  
                   +Aa  g+++ + ++Ll   g+
  CDO72005.1 1076 LIAAAWGCTPdMFDYLLS-QGI 1096
                  48999999966******9.675 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.00015
       Ank_3    3 etpLhlAarsgnleivkfLlenkg 26  
                  +tpLh+A+++++l+ v+ Ll+   
  CDO72005.1 1151 NTPLHIAVKQTSLPTVRQLLQ-SK 1173
                  8************99*****9.44 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.039
       Ank_3    2 GetpLhlAarsgnleivkf 20  
                  G t+Lh+A++    ei+++
  CDO72005.1 1184 GSTALHIAVKRSLSEIARL 1202
                  89*******9998886554 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.08   2.4e+02       8      56 .]     528     576 ..     521     576 .. 0.82
   2 !    7.9   0.1    0.0013       3.9      15      39 ..     568     592 ..     555     603 .. 0.80
   3 !   17.9   0.0   9.5e-07    0.0028       8      46 ..     678     715 ..     674     716 .. 0.85
   4 ?   -0.1   0.0      0.42   1.3e+03       6      41 ..     960     996 ..     955     999 .. 0.75
   5 ?    0.9   0.0      0.21   6.2e+02      17      55 ..    1073    1111 ..    1068    1112 .. 0.87
   6 !   14.6   0.0     1e-05     0.031      14      56 .]    1148    1191 ..    1141    1191 .. 0.89
   7 !    9.9   0.0   0.00031      0.92      12      35 ..    1180    1203 ..    1177    1226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.08
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 d+nr+d  g t+L vA+     ++++ L++ ga  + +  +G+tal+lA
  CDO72005.1 528 DLNRRDHVGRTALQVAIMSKDVEIACDLIDAGARMTSRIVDGRTALHLA 576
                 6788888888999999999999999999977777777777899999987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0013
       Ank_5  15 ggntpLhvAakygaadvvrlLlarg 39 
                 +g t+Lh+Aa    + vvr+Ll+r 
  CDO72005.1 568 DGRTALHLAAQLDLPVVVRKLLDRS 592
                 456*******************543 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 9.5e-07
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 ++ ++d + +tpLh+A+  g++  v +Lla gad++l +
  CDO72005.1 678 NLPDWD-YLFTPLHYAVISGSLGAVDELLAKGADPKLVE 715
                 555565.667*************************9976 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.42
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLl.argad 41 
                 p+++ ++d++ + +L  Aa+ ga+ ++++L  +r+++
  CDO72005.1 960 PNAPYAPDKFETPILWEAARTGALGLIQYLSsERPVA 996
                 56666666666555555999**********9999987 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.21
       Ank_5   17 ntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55  
                  n++L+ Aa++  +d++ +Ll  g  ++ td rG++++++
  CDO72005.1 1073 NHILIAAAWGCTPDMFDYLLSQGIRATDTDVRGWNVYHM 1111
                  689999**************9999999999999988875 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 1e-05
       Ank_5   14 gggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56  
                  g  ntpLh+A+k+ +++ vr Ll       +l+d +G+tal++A
  CDO72005.1 1148 GALNTPLHIAVKQTSLPTVRQLLqSKAPVFTLRDQQGSTALHIA 1191
                  5568*******************9777778999*********99 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00031
       Ank_5   12 ldgggntpLhvAakygaadvvrlL 35  
                  +d+ g t+Lh+A+k+  ++++rl 
  CDO72005.1 1180 RDQQGSTALHIAVKRSLSEIARLV 1203
                  688999**************9976 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.016        48       2      25 ..     536     560 ..     536     565 .. 0.90
   2 !   14.5   0.0   1.2e-05     0.036       1      26 [.     568     595 ..     568     598 .. 0.84
   3 !   14.0   0.0   1.8e-05     0.054       3      27 ..     686     711 ..     684     715 .. 0.82
   4 ?   -3.1   0.0       4.5   1.3e+04       9      24 ..    1079    1095 ..    1062    1101 .. 0.65
   5 !    5.7   0.0    0.0077        23       3      22 ..    1151    1170 ..    1150    1181 .. 0.67
   6 !    6.2   0.0    0.0053        16       2      22 ..    1184    1203 ..    1183    1214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
                 SBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGA 25 
                 G+T+L +A++ ++++i+ +L+  GA
  CDO72005.1 536 GRTALQVAIMSKDVEIACDLIdAGA 560
                 99********999********6687 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.2e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TT.TS CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hG.An 26 
                 dG+T+LHlAa+ + + +++ LL ++ An
  CDO72005.1 568 DGRTALHLAAQLDLPVVVRKLLdRSaAN 595
                 8******************999434344 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.8e-05
                 BBHHHHHH...HHTTHHHHHHHH.TTTST CS
         Ank   3 nTPLHlAa...tngkkriiklLL.hGAnl 27 
                 +TPLH+A+   + g    + +LL +GA++
  CDO72005.1 686 FTPLHYAVisgSLG---AVDELLaKGADP 711
                 8******9555555...******99***8 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4.5
                  HHHHTT.HHHHHHHH.TT CS
         Ank    9 Aatngk.kriiklLL.hG 24  
                  Aa  g  +++  +LL +G
  CDO72005.1 1079 AA-WGCtPDMFDYLLsQG 1095
                  33.343455888899777 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0077
                  BBHHHHHH...HHTTHHHHHHHH CS
         Ank    3 nTPLHlAa...tngkkriiklLL 22  
                  nTPLH+A+   +      ++ LL
  CDO72005.1 1151 NTPLHIAVkqtSLP---TVRQLL 1170
                  8******9444333...666555 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0053
                  SBBHHHHHHHHTTHHHHHHHH CS
         Ank    2 GnTPLHlAatngkkriiklLL 22  
                  G T+LH+A+ +   +i++ L+
  CDO72005.1 1184 GSTALHIAVKRSLSEIAR-LV 1203
                  89*******777777777.55 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.021        64       9      37 ..     508     536 ..     505     552 .. 0.86
   2 ?    2.3   0.0     0.081   2.4e+02       6      26 ..     688     708 ..     687     720 .. 0.84
   3 ?    2.7   0.1     0.061   1.8e+02       6      30 ..    1035    1059 ..    1034    1063 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
     DUF1843   9 qAiasGDLakMKalaaqaeqqLaeygdia 37 
                 +Ai sGD a   +++++ e+ L+ ++ + 
  CDO72005.1 508 KAIVSGDPASVAKIVSAGETDLNRRDHVG 536
                 7***********************99985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.081
     DUF1843   6 aiqqAiasGDLakMKalaaqa 26 
                 +++ A+ sG L   ++l+a+ 
  CDO72005.1 688 PLHYAVISGSLGAVDELLAKG 708
                 79**************99874 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.061
     DUF1843    6 aiqqAiasGDLakMKalaaqaeqqL 30  
                  ai+ A+  + L+ +Kal   +  q+
  CDO72005.1 1035 AITTAVIGNELEALKALNNLRSVQM 1059
                  9***************987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 9602.53
//
Query:       CDO72006.1  [L=362]
Description: hypothetical protein BN946_scf184943.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.21   11.7   1.2        4.2    7.5   0.0    2.9  3  Adipogenin  Adipogenin


Domain annotation for each model (and alignments):
>> Adipogenin  Adipogenin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00024       4.2      22      53 ..      21      52 ..       5      57 .. 0.83
   2 ?   -1.3   0.3      0.13   2.3e+03      28      52 ..     129     159 ..     107     161 .. 0.47
   3 ?    1.4   0.0     0.018   3.3e+02       5      30 ..     176     201 ..     173     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00024
  Adipogenin 22 clpvalllfllivwlrfllsqdseendsdlcl 53
                c+  ++ l+l  + ++fll + s+ n   + l
  CDO72006.1 21 CMTYGIYLVLAAICIHFLLKRRSKTNSQRIIL 52
                99999*******************99887776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
  Adipogenin  28 llfllivwl....rfllsqdsee..ndsdlc 52 
                 +l+ + +w+     +ll   se    d d+c
  CDO72006.1 129 ILLPICLWIgavcAYLLPHRSERsrTDCDIC 159
                 2222334432222456655555311456666 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.018
  Adipogenin   5 lvplvndltlsflvfwlclpvalllf 30 
                    lv+   + f   ++cl ++l ++
  CDO72006.1 176 SASLVQTTIINFQTAFYCLSITLNIL 201
                 567888889999999****9998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2593.51
//
Query:       CDO72007.1  [L=176]
Description: hypothetical protein BN946_scf184943.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1246.03
//
Query:       CDO72008.1  [L=332]
Description: hypothetical protein BN946_scf184943.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2441.32
//
Query:       CDO72009.1  [L=175]
Description: hypothetical protein BN946_scf184943.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-18   66.8   0.5      4e-18   66.0   0.5    1.4  1  DUF3328   Domain of unknown function (DUF3328)
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.23   11.4   0.0    1.4  1  DUF1265   Protein of unknown function (DUF1265)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.5   4.4e-22     4e-18     103     219 ..      45     165 ..      30     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 4.4e-22
     DUF3328 103 lrrlgkdpaaelevedkseg........gyiaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiLrqsimChaDvtli.....tf 188
                 +  l +++a++++ ++   g        g   g+++fHqLHCL+ +r+a+ +         + + e + +H++HC+++ rq ++C ++v l+       
  CDO72009.1  45 VHYLPNNSAEWHSMFPVGSGgfvrlgprGRLFGVSMFHQLHCLDKMRRAVVE---------PPPSEWESWHTQHCLNYVRQMLLCASNVRLEpvkeiES 134
                 66666666444444333333477777778899******************32.........333344689**********************5554433 PP

     DUF3328 189 nwvkgtkgpvpdfntehqCrdfealldWaee 219
                 +  +++++ v++++ eh+Crd++ l++ aee
  CDO72009.1 135 HAGDKKEAKVDGLGLEHRCRDWSLLRRVAEE 165
                 333334444555999*******999876666 PP

>> DUF1265  Protein of unknown function (DUF1265)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.23      10      30 ..     111     131 ..     107     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
     DUF1265  10 lmYVknlLivAedaklsnvqe 30 
                 l YV ++L+ A + +l+ v+e
  CDO72009.1 111 LNYVRQMLLCASNVRLEPVKE 131
                 79**************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1282.48
//
Query:       CDO72010.1  [L=211]
Description: hypothetical protein BN946_scf184943.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-17   61.8   0.9    5.9e-16   58.9   0.3    2.2  2  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0     0.007   1.3e+02      11      65 ..      17      71 ..       7      98 .. 0.44
   2 !   58.9   0.3   3.3e-20   5.9e-16     110     215 ..      90     188 ..      68     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.007
     DUF3328 11 rrllllvlllllllllllilssllsssekkaak..........kkspsspspaldaieyelkqfk 65
                ++ll+++ll l+++ll +++  +l  + +++ +           +            +y ++++ 
  CDO72010.1 17 YVLLCASLLGLAISLLPFAARKTLLPPLESPSSkplseytyvgEDY----------PDYYPVELG 71
                4456666666666666666655555544444443333322222222..........223333333 PP

  == domain 2  score: 58.9 bits;  conditional E-value: 3.3e-20
     DUF3328 110 p.aaelevedkseg.......gyiaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiLrqsimChaDvtlitfnwvkgtkgpvpd 200
                 + +++l+v ++ +g       g + gl  fHq+HCL ++r+a+  e++        +  +   H++HC+++Lrq+imC a+ t+++           ++
  CDO72010.1  90 SeREWLSVYPPGGGflrlgeeGRPFGLALFHQMHCLMRIRRAM--ETR--------TSSD---HVHHCFNYLRQTIMCEANPTVEPVIPIL--GRRSVN 173
                 3566777777777778888889999******************..333........3344...**********************988866..688888 PP

     DUF3328 201 fntehqCrdfealld 215
                  +  + C+d++++  
  CDO72010.1 174 AEIPRVCKDWTQVYA 188
                 89999*****99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1469.70
//
Query:       CDO72011.1  [L=77]
Description: hypothetical protein BN946_scf184943.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 584.97
//
Query:       CDO72012.1  [L=415]
Description: hypothetical protein BN946_scf184943.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-06   28.3   0.1      0.012   15.4   0.0    3.1  3  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00036       6.5       3      39 ..      64      98 ..      62     112 .. 0.76
   2 !    2.5   0.0     0.006   1.1e+02      71     101 ..     151     180 ..     138     217 .. 0.82
   3 !   15.4   0.0   6.6e-07     0.012     101     133 ..     306     336 ..     295     346 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00036
       DDE_3  3 vfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvn 39
                +++DEs f ++++rr+ w  k ++++  ++g  +  +
  CDO72012.1 64 WYHDESVFYTHDRRRTRWVHKSEKAVPHAKG--EGAS 98
                9*******************99987433333..3333 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.006
       DDE_3  71 lletalqakkivlilDnasiHkseslrelve 101
                 l ++++++   vli  na++H +++  +l +
  CDO72012.1 151 LSRHYPDE-DHVLIFNNATTHLKRAADALSA 180
                 45566666.99**********9988777655 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 6.6e-07
       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrel 133
                 +e   ++++l+lP+   elN iE++w++ kr  
  CDO72012.1 306 KE--CSFTVLFLPKFHCELNFIEQCWGYAKRIY 336
                 33..78999********************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3146.19
//
Query:       CDO72013.1  [L=558]
Description: hypothetical protein BN946_scf184943.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-37  128.7  52.8    5.4e-36  124.2  53.5    2.4  2  MFS_1     Major Facilitator Superfamily
    8.1e-15   54.3   8.1    2.1e-13   49.6  11.6    1.5  2  TRI12     Fungal trichothecene efflux pump (TRI12)
    4.3e-13   48.9  12.0    4.3e-13   48.9  12.0    2.9  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        2.5    6.3  18.5        1.4    7.2   3.7    3.9  4  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2  53.5   1.2e-39   5.4e-36       2     347 ..      41     434 ..      40     440 .. 0.81
   2 ?   -2.3   0.0      0.35   1.6e+03     212     225 ..     502     515 ..     481     543 .. 0.57

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 1.2e-39
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlga 99 
                  +a+flsal+ s++++alp ++ ++++  ++++ ++ ++y+l+ ++  +++G++++ fGrr+vll+glllfa+g +l++  a+s+ +l+ +r +qGlg+
  CDO72013.1  41 TIATFLSALDTSAVSTALP-TIVNHFH--GQQFVWIGSAYTLAGVAILPLAGHFANLFGRRPVLLVGLLLFAFGsALCGG-AQSMAMLIGGRTVQGLGS 135
                 699****************.9****99..*********************************************777777.36777************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla..sslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 g+++++  +++ad++p +erg + g +++ +s+++i+gpl+gg++a    + Wr++fy++ +++ ++++l +++l  + p+ + ++   +         
  CDO72013.1 136 GVILTLTEIILADLVPLRERGAYQGAIGLIWSIASIIGPLVGGAFAarKDWTWRGLFYLNLPLTGISLILCVFFLNLKTPRAPLSERLSRIdwfgnlli 234
                 *********************************************9555566***************99866666666666666666555599****** PP

       MFS_1 189 ...........................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsgll 244
                                                              +   p +p +++l ++  + +  i+ +l +f++s++l++lp+y+q   + s  +
  CDO72013.1 235 igsttsallgltwggiqfswgsanvlvplivgfvgifawviyeIYVPVEPTIP-FRLLNNRTSV-SGYIGTALHGFVISAALFYLPVYFQACKDSS-PV 330
                 ************99999988888888887777777777776654444444444.8888888877.57777778888************99999999.56 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll...vlvliGfglgfvfpsllalasdlappeeagtasgl 340
                  +g+ +  ++l +a++a++ag+ ++ +++ ++ +++  +++++ +gl  +  ++ a+  ++   +++ iGfgl f+ +++  la   +  e +++a+++
  CDO72013.1 331 GSGVNMLPYSLSIAPFAIVAGATATGMNKYKPQNIIAWACITIGMGLQSTLGADAATRNWIgfqIVAGIGFGLLFTATTFPILAPLPV--ELNASALSF 427
                 6666666677777777777777776666666666666666666666655555555555555212555588888888888888888888..999999999 PP

       MFS_1 341 fntagsl 347
                 f +++++
  CDO72013.1 428 FIFIRTF 434
                 9998876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.35
       MFS_1 212 llialllfffgfsg 225
                 ++ia+++++f  ++
  CDO72013.1 502 VMIAIAGVGFLSAF 515
                 22222222222222 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6  11.6   4.6e-17   2.1e-13      37     309 ..      24     294 ..       2     387 .. 0.76
   2 ?   -2.1   0.0      0.21   9.3e+02     503     586 ..     471     552 ..     427     555 .. 0.65

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 4.6e-17
       TRI12  37 yrsprvvasfaafslnv.vatyf.vlqasa..salpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkf 131
                   sp   a+f    l + +at++  l++sa  +alp i++     +   + s+ +t+     + + g +++ fgrrp++++  +l   g+ +   a+ +
  CDO72013.1  24 VASPPKTATFWLSLLTItIATFLsALDTSAvsTALPTIVNHFHGQQFVWIGSA-YTLAGVAILPLAGHFANLFGRRPVLLVGLLLFAFGSALCGGAQSM 121
                 55666666665444443145554245555432799999998866555555554.555443334578***********************999999**** PP

       TRI12 132 ntllaamtllgvaagpaga.splfvgelms..nktkflgllivsipvvvtsglspylgqrlaiqgswrw..ifyiyiitsaiavllivvwyyppsfaql 225
                   l+   t+ g+ +g   + + +++ +l+   ++  + g + + i  +  s ++p +g  +a + +w w  +fy+ + ++ i+++l v       f +l
  CDO72013.1 122 AMLIGGRTVQGLGSGVILTlTEIILADLVPlrERGAYQGAIGL-IWSI-ASIIGPLVGGAFAARKDWTWrgLFYLNLPLTGISLILCVF------FLNL 212
                 ***************9755277889999861144556665433.3333.445899*****99999988844677777777766666554......6789 PP

       TRI12 226 hgkkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdt 309
                 +  ++   e l+++dw g +l+i  ++  llg++wgg     w sa+v+  +  g   +  + +ye+y  pv+p +p  l+++ 
  CDO72013.1 213 KTPRAPLSERLSRIDWFGNLLIIGSTTSALLGLTWGGIQF-SWGSANVLVPLIVGFVGIFAWVIYEIY-VPVEPTIPFRLLNNR 294
                 999**********************************865.6*****9998888988899999*****.59******9998753 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.21
       TRI12 503 ieavkalpgmtteiaavvsramadsytasyanvyyfamalgvipiiaslcmrdl..dryltdhvphqlydrkkadkdvlegdsesq 586
                    +  +pg+ + +   v  a+ads       ++ + +a+  +  ++++ mr++  +r + +    +  +r +a k   egds ++
  CDO72013.1 471 YSIIPQVPGLPEPLKDQVRDAFADSLKV----LWEVMIAIAGVGFLSAFLMREIpmQRSVDEAWGLEQKERERARKAKEEGDSATE 552
                 4556677777777777777777777654....445566777778888888888621445555556667788888888888888775 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9  12.0   9.7e-17   4.3e-13      47     190 ..      69     208 ..      31     216 .. 0.89
   2 ?   -2.1   0.3      0.28   1.3e+03     318     364 ..     231     272 ..     217     279 .. 0.59
   3 ?    0.8   3.3     0.038   1.7e+02      61     122 ..     350     407 ..     299     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 9.7e-17
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                 +  +i s++ + +++   +ag +++ fGR+++ll++ +lf  g++l++ a+   s+ +li gR + G+g G++ +l+ + ++ + p + Rga  +   l
  CDO72013.1  69 QFVWIGSAYTLAGVAILPLAGHFANLFGRRPVLLVGLLLFAFGSALCGGAQ---SMAMLIGGRTVQGLGSGVILTLTEIILADLVPLRERGAYQGAIGL 164
                 55677777777777778899*******************************...********************************************* PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                  +++  +++  +g +++  ++ ++wr l++l+l ++ + lil +f
  CDO72013.1 165 IWSIASIIGPLVGGAFAARKD-WTWRGLFYLNLPLTGISLILCVF 208
                 *********************.************99887777665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHH CS
    Sugar_tr 318 tllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfa 364
                 +ll++G+++ a++ +  g i + +++a+      v++ +i+ f+ +fa
  CDO72013.1 231 NLLIIGSTTSALLGLTWGgIQFSWGSAN------VLVPLIVGFVGIFA 272
                 4677777777777777775555555555......44444444444444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH CS
    Sugar_tr  61 iGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl 122
                 +G+  +     +  +k+  +ia ++  ig  lq +  ++ ++   i  ++++Gig Gl  + 
  CDO72013.1 350 AGATAT----GMNKYKPQNIIAWACITIGMGLQSTLGADAATRNWIGFQIVAGIGFGLLFTA 407
                 333333....3556799999999999******9999999999999999********987654 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.7    0.0087        39       3      83 ..      37     115 ..      35     117 .. 0.87
   2 ?    7.2   3.7    0.0003       1.4     132     233 ..     121     210 ..     115     225 .. 0.80
   3 ?    4.9   0.4    0.0015       6.5     285     375 ..     285     375 ..     277     383 .. 0.89
   4 ?   -0.7   0.0     0.075   3.3e+02     216     256 ..     500     548 ..     494     557 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0087
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslll 83 
                 l+ + +++++ a+  + +++++ ti  +F+   ++  +i s++ ++ ++++ + ++f++   r  ++ +g+ll+a+gs l+
  CDO72013.1  37 LLTITIATFLSALDTSAVSTALPTIVNHFH--GQQFVWIGSAYTLAGVAILPLAGHFANLFGRRPVLLVGLLLFAFGSALC 115
                 567788889999999999999999999995..7899***********************9655556669********9986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0003
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaa 230
                 + +++ + +++G+G+ +i tl    + D v  ++   y g++  ++ +  ++G l+G++++              kd  W g ++l+  ++g+ l+l++
  CDO72013.1 121 MAMLIGGRTVQGLGSGVILTLTEIILADLVPLRERGAYQGAIGLIWSIASIIGPLVGGAFAA------------RKDWTWRGLFYLNLPLTGISLILCV 207
                 45788899999999999999999999999999999999999999999999999999987765............4677888888888888888888888 PP

                 xxx RF
        OATP 231 ipl 233
                 ++l
  CDO72013.1 208 FFL 210
                 765 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0015
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 285 kalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsll 375
                 ++  rll+n++ +   ++++++ +++++   +lp y +     s+  + + + ++++  a + i++g   +   k ++++++++++++  +
  CDO72013.1 285 TIPFRLLNNRTSVSGYIGTALHGFVISAALFYLPVYFQACKDSSPVGSGVNMLPYSLSIAPFAIVAGATATGMNKYKPQNIIAWACITIGM 375
                 56679*******************************9999999998888888899999999999999999999999999999999998665 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.075
                 xxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx RF
        OATP 216 WlgflilgvllllaaiplffFPke........lpkkkeerakkkseees 256
                 W  ++ ++ + +l+a+++   P +        l++k++era+k++ee +
  CDO72013.1 500 WEVMIAIAGVGFLSAFLMREIPMQrsvdeawgLEQKERERARKAKEEGD 548
                 77899999999***********997766555555444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4108.67
//
Query:       CDO72014.1  [L=589]
Description: hypothetical protein BN946_scf184943.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-43  149.7   0.2    1.5e-43  149.4   0.2    1.1  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.2   8.2e-48   1.5e-43       1     324 [.      66     428 ..      66     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 8.2e-48
                     HHHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEE..EETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST......... CS
  Beta-lactamase   1 ldrlvrelmaqggipGvavavvrdgkvvldkggGv..adleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP......... 84 
                     +d+ ++++ a+g+i +++vavv    ++++k +G    +  +g p t  + +r+aSv+K+ft +  l l ++G+l++ddpV+kylP         
      CDO72014.1  66 VDQFFTNRFAEGDIDSLSVAVVTSTGPLYEKNFGTirGNETNGPPTTSHSQYRLASVSKLFTILEGLILEQKGALSWDDPVQKYLPqfkyrpdgl 160
                     57889999999**********************988878888889999*********************************************** PP

                     ....TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH................HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHH CS
  Beta-lactamase  85 ....efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada................aellralatlppkyapGtkwgYsntgygllgellekv 159
                         +    + ++iTl +L++H sGl ++++++++++ ++d                 + l  a++++++ ++p    +Ysntg gllg+++ ++
      CDO72014.1 161 apnnKGLETDRAPITLFQLASHMSGLGRDWPPGTVKDWPHDMmgggppptngnpfpshEALYNAISKHHLTSPPSFYPAYSNTGTGLLGMVVSAA 255
                     ****888888889*************9999999999999999***************************************************** PP

                     H....T.SH...HHHHHHHHTTTTTTSTTEESSTTGGGGGGB.EEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHHHHHCCSSSSHH CS
  Beta-lactamase 160 t....g.rs...leqllreeilrpLgmkdtelgppesgdprd.aagytgngpearappanlpaeaegagglistardlarflglalegglllsae 245
                     +    g +s   +++ll++ +++pLgm+  ++ + e   + + a + +++++++++ +a++     +agg +s+++d+ ++ ++ l++ +  s  
      CDO72014.1 256 SsianGdKStisYADLLERDLFKPLGMNGSHFLTTEKNKHLVvAPSVAPEVADQDFLDAMN-----PAGGQFSSLSDMIKVTQMILNPARPDSLI 345
                     *99994354677*******************988777755540444444444444444444.....77899************************ PP

                     HHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH....TEEEEEEE..STEEEEEEEECGGTEEEEEEESBCSSHHHHHHHHHH CS
  Beta-lactamase 246 tlaqltaklssgttrpagiraglglGwvladktga....pgtfghtG..ggygtyvfvdpeanlvvavltnrdppnedaaedarl 324
                     t      +l++   + + +  + g+ w + +  ++    ++++++ G   gy+t+++v p ++++++vl+ + +p  daa+ ++ 
      CDO72014.1 346 TSYSRDKWLQTVHAFEEDDWTEIGFIWEIIKAADSngrlRKIYWKLGamAGYHTAIAVHPGTGYGIVVLMGGRYP--DAAKLTYD 428
                     ***************************9998888899***********************************995..66665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4324.07
//
Query:       CDO72015.1  [L=105]
Description: hypothetical protein BN946_scf184943.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-11   43.3   0.9    3.8e-11   42.9   0.9    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.9   2.1e-15   3.8e-11      67     141 ..      14      87 ..       2      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 2.1e-15
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn   H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO72015.1  14 LLGTLHDHRLGPSTIIFQHDNDLKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5677888888888999999**9**************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 715.89
//
Query:       CDO72016.1  [L=606]
Description: hypothetical protein BN946_scf184943.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-38  133.1   0.7    2.2e-38  132.3   0.7    1.3  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.7   1.2e-42   2.2e-38       2     318 ..      70     458 ..      66     468 .. 0.90

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 1.2e-42
                     HHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEE..EETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST.......... CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvrdgkvvldkggGv..adleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP.......... 84 
                     d+ ++ + a+g+i +++vavv     ++++ +G   a+  +g p t d  +r+aSv+K+ft +  l l ++G+l++ddpV+k+l           
      CDO72016.1  70 DEFFSSRFAEGDIDSLSVAVVTSAGALYEQNFGTvrANETDGPPTTSDAQYRLASVSKLFTVLEGLVLEQRGALSWDDPVQKHLKdftyrpdgls 164
                     556666777899********************99999999999**************************************************** PP

                     ...TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH................HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHH CS
  Beta-lactamase  85 ...efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada................aellralatlppkyapGtkwgYsntgygllgellekvt 160
                        +  +p  ++iTl +L++H sGl ++++ + ++e ++da                + + +a+++++++++p +  +Ysntg+g+lg++l +++
      CDO72016.1 165 pknKGLAPEHAPITLLQLASHMSGLGRDWPAGIAKEWPYDAtgggpppdnghpypthEAMYKAVKKHHLVSPPWSYPSYSNTGMGILGMALSAAS 259
                     ***999999999*************9999999999999999****************************************************** PP

                     ....T.SH...HHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC..........TTTBEEEEHHHHHHHHHHHHH CS
  Beta-lactamase 161 ....g.rs...leqllreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeae..........gagglistardlarflglale 237
                         g +s   +++l+++ +++p+g++  ++   ++ ++ +   +   ++e            +          +agg +s+++dl ++ ++ l+
      CDO72016.1 260 rvadGnQSrisFADLMKRDVFEPMGLNGSHFLATAENRHLVVVPS--IAQE------------YvdqdfldamnPAGGQFSSLSDLIKVTQMILN 340
                     99995455777********************99888855544444..1111............11223334556899****************** PP

                     CCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH.....................................TEEEEEEE..STEEE CS
  Beta-lactamase 238 gglllsaetlaqltaklssgttrpagiraglglGwvladktga.....................................pgtfghtG..ggygt 293
                     + +  s  t      +l+    + + +  ++gl w + ++ ++                                      + f   G   g+++
      CDO72016.1 341 PARPDSLITSYSRDKWLRPVHAFEEDDWTEVGLAWEIIKRADShgrlrkiywkrassrspsaaaavrhialrnrtgsrvfFSFFPAVGelVGWHS 435
                     *************************************9999999********************************998877777778999**** PP

                     EEEEECGGTEEEEEEESBCSSHHHH CS
  Beta-lactamase 294 yvfvdpeanlvvavltnrdppneda 318
                     +v+v p ++++++vl+++ +p  da
      CDO72016.1 436 AVAVQPGTGYGIIVLMSGRYP--DA 458
                     ********************7..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4317.71
//
Query:       CDO72017.1  [L=977]
Description: hypothetical protein BN946_scf184943.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-54  185.4  16.2    2.3e-54  184.4   4.8    2.3  2  ThrE      Putative threonine/serine exporter
    2.3e-10   40.7   2.3    2.3e-10   40.7   2.3    2.3  2  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.4   4.8   2.5e-58   2.3e-54       1     239 [.     545     783 ..     545     785 .. 0.94
   2 !    6.9   3.5   0.00041       3.7     108     198 ..     818     910 ..     813     962 .. 0.76

  Alignments for each domain:
  == domain 1  score: 184.4 bits;  conditional E-value: 2.5e-58
        ThrE   1 dlilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsvdeeeesittvrrv.rsrgvnleklsevnelsreiaageisleeaeerLde 98 
                 d+il+l+++++++G +t+r+++++++++++l+    +++++p  + +s+++ ++s++ ++ + + ++++ +kl+e +el+++++++eis++ea+ +Ld+
  CDO72017.1 545 DFILKLARAMMMFGGPTHRLQAQIQATGKVLET-PLSCMYLPDVMLISFEDPSTSTSNIKFIrQGSSLDIGKLQEAHELYWRVIHDEISVKEASMELDN 642
                 69*******************************.8**************64566666688898999********************************* PP

        ThrE  99 Ierskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlllakrglnsfvleavaaflasllallavslglglnpdaiiigsillLv 196
                 ++r++p y++w+ vl+ g ++a+++ +  +g++id +++f +g+l+ +++l+ a+ +l+s+v+e++ a + s++a+++ s +    ++ai+ +s++l++
  CDO72017.1 643 LMRRRPLYKNWQIVLIGGACSASICSVSfNGSFIDSIMSFPLGCLLIIIQLFAARNELYSNVFEITVATIFSFIAAALSSAK-FFCYSAIASSSVVLIL 740
                 **************999999998886655**********************************************9999954.2336************ PP

        ThrE 197 PGlpltnavrDllsgdlvsGlaRlveailialaiafGivlals 239
                 PG+++++++++l+s+++vsG++R++ +++++l+++fG +++++
  CDO72017.1 741 PGFIVLCGSLELSSRNIVSGAVRVCFSCIYSLFLGFGLAIGAT 783
                 ***************************************9976 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00041
        ThrE 108 rwlvvlaaglaaaafallfggdw..idflvaflagllggllrlll.akrglnsfvleavaaflasllallavslglglnpdaiiigsillLvPG 198
                  w++ l + l + +++l   + w   ++ + ++++++g ++++++ ++++  s ++ av+a+ +++++ l +++ ++ n+  i+i +il+ +P 
  CDO72017.1 818 LWWAFLTVPLYSLFLSLRNYAPWrhRELYLLVAVSCIGWVTNHFTgTRFKGQSDISAAVGALAVGFVSNLYGRF-FNGNAFVIMITGILFQLPS 910
                 5777777777777777777665522577888999***********9999************************8.6889999999999998884 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7  10.2      0.69   6.2e+03      29     125 ..     684     784 ..     656     787 .. 0.79
   2 !   40.7   2.3   2.6e-14   2.3e-10      20     127 ..     842     959 ..     822     961 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.69
      ThrE_2  29 lGavgwlvylllmelgvsialasflaalaigllsellArriktPvtvflipgllplvPGlaaYktvlslvqgn....leeavengiealliagalavGl 123
                 lG++  ++ l++   +   ++  ++ a+++++++  l+  +      ++ ++++ + PG  +    l+l ++n       ++   i  l+  ++la+G+
  CDO72017.1 684 LGCLLIIIQLFAARNELYSNVFEITVATIFSFIAAALSSAKFFCYSAIASSSVVLILPGFIVLCGSLELSSRNivsgAVRVCFSCIYSLFLGFGLAIGA 782
                 6677777777777777666666777778888888888888888899999999**********9999999999866666777778888899999999998 PP

      ThrE_2 124 vl 125
                 ++
  CDO72017.1 783 TA 784
                 75 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 2.6e-14
      ThrE_2  20 krallvagllGavgwlvylllme.lgvsialasflaalaigllsellArriktPvtvflipgllplvPGlaaYktvlslvqgn.........leeaven 108
                 +r l++ + + ++gw+++ +  + ++ +  ++ +++ala+g++s+l++r +   ++v++i g+l   P + a   ++++v  +         +   +++
  CDO72017.1 842 HRELYLLVAVSCIGWVTNHFTGTrFKGQSDISAAVGALAVGFVSNLYGRFFNGNAFVIMITGILFQLPSGLANGGLFNFVHAQesgsssnevYLSGFQT 940
                 488999999**********99999********************************************************7666777777778888999 PP

      ThrE_2 109 giealliagalavGlvlvs 127
                  ++ +++ ++l vGl ++ 
  CDO72017.1 941 ALQLISVSIGLTVGLGISL 959
                 9999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 6010.49
//
Query:       CDO72018.1  [L=437]
Description: hypothetical protein BN946_scf184943.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   14.9  11.4      0.022   14.2  11.4    1.3  1  DUF3552   Domain of unknown function (DUF3552)
       0.11   11.9   4.7       0.15   11.5   4.7    1.2  1  DUF2884   Protein of unknown function (DUF2884)
       0.19   11.0   0.5        0.3   10.3   0.5    1.2  1  MPS2      Monopolar spindle protein 2
       0.38   10.1   4.8       0.98    8.7   4.5    1.6  1  FAM76     FAM76 protein
       0.45   11.2   6.2       0.64   10.7   5.0    1.9  2  YabA      Initiation control protein YabA
       0.68    8.5   7.5       0.89    8.1   7.5    1.1  1  AAA_13    AAA domain
        9.2    5.3   7.5         15    4.6   7.5    1.2  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1


Domain annotation for each model (and alignments):
>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  11.4   8.5e-06     0.022      57     130 ..     350     418 ..     324     423 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.5e-06
     DUF3552  57 eakeeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeele 130
                  a+e+++       +e  +  +e +r+ +   +ke +L +k+++l++k+++l++k++ l++k + l +  +ele
  CDO72018.1 350 MARENARM-----ARENARMAHENARMAHENAEKERALAEKDQALSQKDQALSQKDQALAEKDRALARLAAELE 418
                 33333333.....4444444455555555555555555555555555555555555555555555555555444 PP

>> DUF2884  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.7     6e-05      0.15     128     226 ..     323     421 ..     288     423 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
     DUF2884 128 esldeafdkefeqeieelveesiGsilsalgsemlesegdnleafeqrmeklgekieeeveeqakalekkaealCeslkeldaleqqLqkkipeLkeyq 226
                 +++ + fd+e+ +  + l e+  G + +a  ++ +++e++ ++  + rm+  + + e+ + e+++al +k +al ++ ++l++++++L +   eL+ ++
  CDO72018.1 323 STVRDLFDEELKKLYRALREAVEGALQMARENARMARENARMAHENARMAHENAEKERALAEKDQALSQKDQALSQKDQALAEKDRALARLAAELEAFK 421
                 448899********************************999***********************************************99888887776 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00012       0.3     145     198 ..     365     421 ..     300     425 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
        MPS2 145 kqesPeklrrsnrklkaLevr...veslkdELeakdevlrekeRelleLkkrlseyk 198
                  +e+ +  +   +k +aL  +   + + ++ L++kd+ l+ek+R l  L   l+ +k
  CDO72018.1 365 AHENARMAHENAEKERALAEKdqaLSQKDQALSQKDQALAEKDRALARLAAELEAFK 421
                 2333444444555666775541113334557***********************998 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.5   0.00038      0.98     202     257 ..     363     418 ..     338     424 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00038
       FAM76 202 snetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaell 257
                 +  ++++ +  ++ ++  a+++  + + +  + l+qkdq+l ekd+ ++ l ael+
  CDO72018.1 363 RMAHENARMAHENAEKERALAEKDQALSQKDQALSQKDQALAEKDRALARLAAELE 418
                 33333345555556666666777778888889999999999999999999998876 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5   6.5e+03      82      93 ..      81      92 ..      60      95 .. 0.83
   2 ?   10.7   5.0   0.00025      0.64       4      71 ..     334     401 ..     324     416 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
                XXXXXXXXXXXX CS
        YabA 82 HiCnvlyGsrrk 93
                 iC++++ ++r+
  CDO72018.1 81 RICHLSFMKERQ 92
                589999999887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegke 71 
                 k+l+++l+e  e   ++ +e +++ +e a++ +ena++  en +  + l+e++++ ++k+++ls+  +
  CDO72018.1 334 KKLYRALREAVEGALQMARENARMARENARMAHENARMAHENAEKERALAEKDQALSQKDQALSQKDQ 401
                 34455555555555555555555666666666666666666655555555555555555555554444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.5   0.00035      0.89     265     367 ..     317     420 ..     310     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00035
      AAA_13 265 lpaerkaaLeahFddefeekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfk.svelesvka 362
                 ++a    +  + Fd+e ++ +++L +++e  +++ +e + +  + +  a+en +++++++e ++++ + +++L +  +al++K + +++ +  l +++a
  CDO72018.1 317 IEALYNSTVRDLFDEELKKLYRALREAVEGALQMARENARMARENARMAHENARMAHENAEKERALAEKDQALSQKDQALSQKDQALAEkDRALARLAA 415
                 566667778899*****************9999999888888888888999999999999999999999999999999999999998874666777777 PP

      AAA_13 363 kiesi 367
                 ++e++
  CDO72018.1 416 ELEAF 420
                 77766 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.5    0.0057        15      34     120 ..     333     419 ..     327     425 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0057
       Atg14  34 lksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdles 120
                 lk+   +l++ +e al+  +e+ + +++  + +    ++  + a++++ l+e  + lsq ++++ +k + la+++++l++  ++le+
  CDO72018.1 333 LKKLYRALREAVEGALQMARENARMARENARMAHENARMAHENAEKERALAEKDQALSQKDQALSQKDQALAEKDRALARLAAELEA 419
                 455555666777777777774444444444444444455667788888899999999999999999999999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1409  (0.0785878); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 2969.44
//
Query:       CDO72019.1  [L=99]
Description: hypothetical protein BN946_scf184943.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 739.30
//
Query:       CDO72020.1  [L=493]
Description: hypothetical protein BN946_scf184943.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.9    8.6   4.6       0.83    9.7   0.5    2.2  2  Elf1      Transcription elongation factor Elf1 like


Domain annotation for each model (and alignments):
>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3     0.076   1.4e+03       3      34 ..      71     103 ..      68     109 .. 0.60
   2 ?    9.7   0.5   4.6e-05      0.83      16      75 ..     209     268 ..     188     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.076
        Elf1   3 Rkk..kakkrkkkkkkklptkFdCpfCnheksve 34 
                 Rk+  +a  +k+ ++k+l ++ +   C+ + +v+
  CDO72020.1  71 RKRtmAAI-TKEMRRKELLKTSEAALCCFSGTVA 103
                 45532222.2333344488888999998888876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 4.6e-05
        Elf1  16 kklptkFdCpfCnheksvevkldkkekiaevsCkvCgesfe.tkvna.lsepvDvYskwiDa 75 
                  +    F+C +C+++ks ++    +   +  +C  C ++f+ +++++ l ++   Y++w+D+
  CDO72020.1 209 SRATAPFHCDRCSSTKSTDIVCVLR--QGLPKCDRCFLQFTgCWAQKiLGAKTKSYAEWFDS 268
                 456778*********9988877766..67889******999866655166889999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3571.43
//
Query:       CDO72021.1  [L=391]
Description: hypothetical protein BN946_scf184943.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-11   41.8   0.0    1.3e-10   41.2   0.0    1.3  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
      3e-07   30.7   0.0    4.6e-07   30.1   0.0    1.3  1  RT_RNaseH    RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.5e-14   1.3e-10       2      97 ..     166     265 ..     165     269 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.5e-14
  RT_RNaseH_2   2 teeqekafeklkealtsapvLahpdpd..kpfiletDaSdtgigavLsqedddgk..erpiafaSrklskaernysttekellAivwalkkfrhyllg 95 
                  +e+q ka+e+lk+al ++p L+  +++  +p+il++D S  ++g    q d+++   ++   f S +l+++e   s+ ++el+++++al+  + yl g
   CDO72021.1 166 SEAQLKAMEDLKQALLESPALRTINYEspAPVILTVDTSYIAVGYHPAQCDEQKPqsRYYSRFGSITLNERESCFSQPKLELYGLFRALQATKLYLIG 263
                  78999*****************9998833579*****************99987665788899999******************************99 PP

  RT_RNaseH_2  96 rk 97 
                   +
   CDO72021.1 264 IH 265
                  54 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   5.2e-11   4.6e-07       4     102 ..     195     298 ..     192     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 5.2e-11
                 S-EEEEEEECTEEEEEEEEEETTE....EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--EEEE-SS--TTTTT----.-..--HHH CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreedge..erpiafaSrklsgaernystiekellAivaalkkfrhylqg.rkftvitDhknlkyllskksln..grlar 97 
                  p+il++D s +++g    q +e++   +    f S +l++ e+ +s+ ++el+++  al+  + yl g ++  v  D +++k +l++ +l+    +++
  CDO72021.1 195 APVILTVDTSYIAVGYHPAQCDEQKPqsRYYSRFGSITLNERESCFSQPKLELYGLFRALQATKLYLIGiHNLVVEVDARSIKGMLNNPDLApsVSMNH 293
                 5899****************6666556588999************************************666**************9888532488999 PP

                 HHHHC CS
   RT_RNaseH  98 WaleL 102
                 W l +
  CDO72021.1 294 WILAI 298
                 99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 2686.56
//
Query:       CDO72022.1  [L=1112]
Description: hypothetical protein BN946_scf184943.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00055   20.4   0.0     0.0015   19.1   0.0    1.7  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0067   17.0   0.0      0.014   16.0   0.0    1.6  1  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.045   13.5   0.0      0.088   12.6   0.0    1.4  1  Asp_protease     Aspartyl protease


Domain annotation for each model (and alignments):
>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.5e-07    0.0015       6      87 ..     624     705 ..     619     707 .. 0.89
   2 ?   -3.6   0.1       2.9   1.7e+04      50      78 ..     730     758 ..     719     761 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.5e-07
                      TTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEE..EE.EETTEEEEEEEEEESSSSEEEEH CS
  gag-asp_proteas   6 ngkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsv..kiggielrnvsavvlegelddlLLGl 87 
                      n + v+ +vD G   +++see   +lgl  ++   + ++  angev  + + ++++  k+ +i+l  ++++v+++++ dlLLG 
       CDO72022.1 624 NKEYVEGVVDPGCMVIAMSEEACHALGLWYDPS-VTLRMVSANGEVNSSLGLVRNIpfKVADIVLY-LQVHVIRNAAYDLLLGR 705
                      6667899*************************6.79**********99999999764488999997.9***************6 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
                      STT-EEEEEEEEEE.EETTEEEEEEEEEE CS
  gag-asp_proteas  50 eveakrvrldsvkiggielrnvsavvleg 78 
                        +++ ++++++k  +  +++v +v+ e+
       CDO72022.1 730 PNMGQVATIPTIKRTSGDVNEVAVVISEE 758
                      55677888999999999999999998875 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06     0.014       9      90 .]     627     707 ..     619     707 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds..lklggltlknvpalvldlgeeidglLGmdf 90 
                      v+ ++D G+ ++ +s+e+ ++lgl  ++s +t r+ +a+gev ++l+ +++  +k+++++l  +++ v+  ++  d+lLG +f
      CDO72022.1 627 YVEGVVDPGCMVIAMSEEACHALGLWYDPS-VTLRMVSANGEVNSSLGLVRNipFKVADIVLY-LQVHVIR-NAAYDLLLGRPF 707
                     56789************************8.6**********999999999755788888885.7888888.788888888876 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.088      29     113 ..     621     705 ..     613     716 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
  Asp_protease  29 vevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGvGtkkilGrvhsaevklgdlflpvalsvledkevdlllGl 113
                   +  n+  v+  vd G     +s+++    gl     + ++ +     +++ lG v  +  k++d +l ++++v+ + + dlllG 
    CDO72022.1 621 LMANKEYVEGVVDPGCMVIAMSEEACHALGLWYDPSVTLRMVSANGEVNSSLGLVRNIPFKVADIVLYLQVHVIRNAAYDLLLGR 705
                   5679999***********99*999988888877666666666666678999********************************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 7509.55
//
Query:       CDO72023.1  [L=202]
Description: hypothetical protein BN946_scf184943.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1633  (0.0910815); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1375.27
//
Query:       CDO72024.1  [L=156]
Description: hypothetical protein BN946_scf184943.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1058.20
//
Query:       CDO72025.1  [L=506]
Description: hypothetical protein BN946_scf184943.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-15   55.4   9.4    2.1e-07   31.2   0.2    4.5  6  HAMP          HAMP domain
     0.0012   18.9   5.3       0.37   10.8   0.1    3.0  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
  ------ inclusion threshold ------
      0.037   14.2   0.2         13    6.0   0.1    3.5  4  Fib_alpha     Fibrinogen alpha/beta chain family
        0.6   10.4  14.2         16    5.8   0.9    5.0  3  DUF948        Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.8   1.3e+04       6      17 ..      45      56 ..      44      57 .. 0.60
   2 ?   -2.0   0.0       1.1   4.9e+03      41      51 ..     160     170 ..     160     172 .. 0.84
   3 ?   -2.3   0.0       1.4   6.3e+03      19      30 ..     222     233 ..     219     238 .. 0.74
   4 ?   -1.7   0.0      0.91   4.1e+03      42      51 ..     276     285 ..     273     287 .. 0.76
   5 !   31.2   0.2   4.6e-11   2.1e-07       2      53 .]     328     379 ..     327     379 .. 0.96
   6 !   27.1   0.1   8.9e-10     4e-06       5      52 ..     423     470 ..     422     471 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.8
                THHHHHHHHHHH CS
        HAMP  6 ilrPLrrLaraa 17
                i+r+L  +ar +
  CDO72025.1 45 IMRSLSAMARRM 56
                666666666654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHHH CS
        HAMP  41 arafNaMldrL 51 
                 +ra+N M+ +L
  CDO72025.1 160 GRALNGMSINL 170
                 69*****9888 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.4
                 HHTTTBTSSTCC CS
        HAMP  19 riaaGdldtrlp 30 
                 ++++Gd++++l 
  CDO72025.1 222 NMSSGDVTSPLV 233
                 6899****9953 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.91
                 HHHHHHHHHH CS
        HAMP  42 rafNaMldrL 51 
                   +NaM+d+L
  CDO72025.1 276 DVINAMVDKL 285
                 569*****98 PP

  == domain 5  score: 31.2 bits;  conditional E-value: 4.6e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 la ++++ +r +a++++++a Gdl+++++v+ r Ei eL  ++N M+ rLr+
  CDO72025.1 328 LAANLTNQVRSIAKVTKAVALGDLSKQIEVDARGEILELKNTVNGMVVRLRA 379
                 7889999******************************************985 PP

  == domain 6  score: 27.1 bits;  conditional E-value: 8.9e-10
                 TTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +++  +r +a ++ ++a+Gdl++ + ++   E+ +L r++N M+d+L 
  CDO72025.1 423 SLTDQVRSIANVTTAVARGDLTQKINIEVEGEMLTLKRTVNSMVDQLS 470
                 567789****************************************97 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   8.2e-05      0.37      32      91 ..     270     340 ..     254     348 .. 0.89
   2 !    8.3   1.6   0.00049       2.2       6     123 ..     354     477 ..     346     488 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.2e-05
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt...........rldtlltnLtdalnalqdtlrneLtnln 91 
                   ++ ql+  ++a+  +L++++++++++++e+ t           +++ +  +Lt  +n+l+ +l+n+  ++ 
    CDO72025.1 270 VMIQLKDVINAMVDKLGQFAKEVTRVSQEVGTegklggqalvlDVEGTWRELTGVVNKLAANLTNQVRSIA 340
                   45699999**********************999******99999999*************99999998885 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00049
  Baculo_PEP_C   6 qLnggggnqfldLtnvLnairlqnvqilaqlatlldai..etqLn..alsedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltn 96 
                   q+ +   ++ l+L n++n +   +  ++a++++   ++  ++qL+  a   d++ +  el+++++ + + Ltd++ +++  +t   + + +++i  +
    CDO72025.1 354 QIEVDARGEILELKNTVNGMVVRLRALAAEVTRVTMEVgsKGQLGgqAHVPDVEGVWLELTRNVNRMCSSLTDQVRSIAnvTTAVARGDLTQKINIE 450
                   7778888889999999999988888888888888777644577862144568888888999999999999999999998663333333333444446 PP

  Baculo_PEP_C  97 LlssvtNinstLnnllqalnnldlgal 123
                      ++  ++ t+n+++  l +++++ +
    CDO72025.1 451 VEGEMLTLKRTVNSMVDQLSAFASEVT 477
                   777888888888888888888876654 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.1   4.6e+02      28      66 ..      33      71 ..      27      87 .. 0.84
   2 ?   -2.9   0.1       1.6   7.1e+03     106     125 ..     273     292 ..     259     299 .. 0.57
   3 ?    2.2   0.0     0.041   1.8e+02      55     111 ..     330     384 ..     311     391 .. 0.63
   4 ?    6.0   0.1    0.0028        13      47     109 ..     414     474 ..     406     483 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.1
                CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha 28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslr 66
                ky+  ++ ++e++ ++l+ ++++  +aee  ++i+ s  
  CDO72025.1 33 KYDGPTDWQIETIMRSLSAMARRMYTAEEALNAIRASES 71
                788889999*********************999988754 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 106 vLqnvlesneqkiqkLeqdi 125
                 +L++v+++ + k+ +  +++
  CDO72025.1 273 QLKDVINAMVDKLGQFAKEV 292
                 55555555555554444444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHH CS
   Fib_alpha  55 eelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvl 111
                  +l+++++++ + +++ +     + k+++ + + eil+lk+t++  + ++r+L   +
  CDO72025.1 330 ANLTNQVRSIAKVTKAVAL--GDLSKQIEVDARGEILELKNTVNGMVVRLRALAAEV 384
                 3333444433333333333..566677777777788888888888888888876555 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0028
                 CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH CS
   Fib_alpha  47 isnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqn 109
                  +n ++  ++l+ +++++ + + + ++    +++k++ e+e e+l+lk+t+++ + ++ +  +
  CDO72025.1 414 TRNVNRMCSSLTDQVRSIANVTTAVAR--GDLTQKINIEVEGEMLTLKRTVNSMVDQLSAFAS 474
                 455566666667777777666666666..6999******************999999887655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.9     0.009        40      25      78 ..     286     347 ..     262     357 .. 0.56
   2 ?    5.8   0.9    0.0036        16      51      78 ..     412     439 ..     357     449 .. 0.80
   3 ?    1.8   0.1     0.064   2.9e+02      28      56 ..     455     483 ..     443     505 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.009
      DUF948  25 kktldeaaatieele...........kqvdpilkevedllakvnelledvneklekvdplteava 78 
                 ++ ++e+++  +e++            +v+++ +e++++++k  +   ++++++ ++ ++t+ava
  CDO72025.1 286 GQFAKEVTRVSQEVGtegklggqalvLDVEGTWRELTGVVNKLAA---NLTNQVRSIAKVTKAVA 347
                 333333333333333555555554445555566665555544444...77778888888888775 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0036
      DUF948  51 dllakvnelledvneklekvdplteava 78 
                 +l+++vn++ + +++++ ++ ++t+ava
  CDO72025.1 412 ELTRNVNRMCSSLTDQVRSIANVTTAVA 439
                 5788899999999999999999999997 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.064
      DUF948  28 ldeaaatieelekqvdpilkevedllakv 56 
                 +  +++t++++ +q+ +   ev+++  +v
  CDO72025.1 455 MLTLKRTVNSMVDQLSAFASEVTRVALEV 483
                 44456666666666666666666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3584.38
//
Query:       CDO72026.1  [L=911]
Description: hypothetical protein BN946_scf184943.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-30  103.5   0.5    2.4e-29  102.1   0.1    2.0  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    3.9e-29  100.8  10.3    1.3e-07   31.9   0.1    5.1  4  HAMP            HAMP domain
    3.8e-26   91.4   0.5    4.4e-24   84.8   0.2    2.9  3  Response_reg    Response regulator receiver domain
      7e-16   58.0   2.1    1.8e-15   56.7   1.1    2.3  2  HisKA           His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.047   13.5   0.0       0.11   12.4   0.0    1.6  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
        2.2    8.3   4.9         12    5.9   1.0    3.3  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.7   1.4e+04       5      20 ..     351     366 ..     349     397 .. 0.76
   2 !  102.1   0.1   7.9e-33   2.4e-29       1     108 [.     493     610 ..     493     614 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHHHHH CS
   HATPase_c   5 rLrqiisnlvdNavkf 20 
                 ++ q++snl d   k+
  CDO72026.1 351 QINQMVSNLRDSIQKN 366
                 6789999999888887 PP

  == domain 2  score: 102.1 bits;  conditional E-value: 7.9e-33
                 EHHHHHHHHHHHHHHHHHHHHS....TTTEEEEEEEE...EE..TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfat....kageieveika...se..ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmg 89 
                 gd+ rLrq+i nlv+Na+kf++     +g++ ++++    ++  ++l++ v+D+GiGi k++l ++f+ f q d+st+r++ggtGlGlsi+k+lv+lm+
  CDO72026.1 493 GDSLRLRQVITNLVGNAIKFTPskvsRKGHVALSCRLlakDDqhVTLEFCVSDTGIGIAKDKLTMIFDTFCQaDGSTTREYGGTGLGLSISKRLVTLMQ 591
                 799*****************334445777887777767652246888889************************************************* PP

                 TEEEEEEETTTEEEEEEEE CS
   HATPase_c  90 GeiwvesepgrGttftftl 108
                 G++wvese   G++f ft+
  CDO72026.1 592 GHMWVESEVANGSKFFFTI 610
                 ***************9987 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   8.2e-10   2.4e-06       3      51 ..       2      50 ..       1      52 [. 0.93
   2 !   31.5   0.2   5.7e-11   1.7e-07       1      51 [.     124     174 ..     124     175 .. 0.96
   3 !   31.9   0.1   4.3e-11   1.3e-07       2      51 ..     217     267 ..     216     268 .. 0.95
   4 !   12.8   0.1   3.8e-05      0.11       2      53 .]     310     361 ..     306     361 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 8.2e-10
                HHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP  3 arrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51
                a +++  +r ++++++++a+Gdl+ ++ v+ + E+ eL  ++N+M+ rL
  CDO72026.1  2 ATNLTDQVRSISEVTKAVANGDLSRTVNVDVQGEMLELKTTVNQMVARL 50
                56778889***************************************99 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 5.7e-11
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                 l+a ++++ +r +a++++++a Gdl++r++v+ r E+ +L +++N M ++L
  CDO72026.1 124 LMAMNLTNQVRSIAEVTKAVAGGDLTKRITVDVRGEMLDLKETVNGMTESL 174
                 578999******************************************998 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 4.3e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldrL 51 
                 +a +++  +r +a+a+r++a+Gdl++ ++      Ei +L+ ++N M+d+L
  CDO72026.1 217 MASNLTLQVRTIAQATRAVAKGDLTQKVTGvPVSGEILDLVNTINSMIDQL 267
                 78889999**********************9******************98 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 3.8e-05
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +a++++  +r  a+  ++  +Gd++  ++v+   E++ L   +N+M+ +Lr+
  CDO72026.1 310 MANNLTTQVRGFAQISAAAMDGDFSRFITVEASGEMDSLKTQINQMVSNLRD 361
                 578888889999999999999*****************************96 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.5e+04      71     102 ..     121     152 ..     114     155 .. 0.62
   2 ?    3.8   0.0     0.021        64      59     111 ..     683     738 ..     674     739 .. 0.86
   3 !   84.8   0.2   1.5e-27   4.4e-24       1     111 [.     760     879 ..     760     880 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5
                   TSEEEEEESSTSHHHHHHHHHCTESEEEESSG CS
  Response_reg  71 elpviiltahseeedavealkagaddflsKpf 102
                   +++ +++  +++   + e+ ka a + l+K +
    CDO72026.1 121 NVNLMAMNLTNQVRSIAEVTKAVAGGDLTKRI 152
                   55556666666666666666666666666665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.021
                   HHHHHHHHHCT..TTSEEEEEESSTS.HHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  59 lellkeireed..pelpviiltahse.eedavealkagaddflsKpfdpeeLlkal 111
                   l +++++re++  + +p ++l+ +s+   +++ +l+ g++  ++ p+++++L +al
    CDO72026.1 683 LSVTENLREHEhlRYIPTVLLSPESSpRLNLKWCLDNGISSQITTPVTEQDLASAL 738
                   67899**99997778*******7766367788899****************99876 PP

  == domain 3  score: 84.8 bits;  conditional E-value: 1.5e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.....vdlillDinmpgmdGlellkeireed.....pelpviiltahseeedav 87 
                   +li++D+ ++++l  ++le+ g  +v+ ae+g+ a++ +k++      +d+il+D++mp m G+e+++ ir+ +     + +p+i+ltah+   d++
    CDO72026.1 760 ILIAEDNLVNQKLAVKILEKYGH-QVEIAENGQLAVDAFKARVqrnrpFDVILMDVSMPFMGGMEATELIRTYEqthnlEPTPIIALTAHAMIGDRE 855
                   8**********************.**************9554444557**********************99985544555**************** PP

                   HHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  88 ealkagaddflsKpfdpeeLlkal 111
                   ++l+ag+dd+++Kp+++++L++ +
    CDO72026.1 856 RCLQAGMDDHITKPLRRSDLMNSI 879
                   ********************9987 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.4     1e+04      50      60 ..     351     361 ..     330     362 .. 0.68
   2 !   56.7   1.1   5.9e-19   1.8e-15       1      63 [.     379     440 ..     379     442 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.4
                 HHHHHHHHHHH CS
       HisKA  50 rldhlvedlLd 60 
                 +++++v++l+d
  CDO72026.1 351 QINQMVSNLRD 361
                 67777777765 PP

  == domain 2  score: 56.7 bits;  conditional E-value: 5.9e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsr 63 
                 s+++fla+++HE+rtP+++i+g++e+  ++ +l+ +++e+l  ++s ar l+ +++d+Ld+s+
  CDO72026.1 379 SKSEFLANMSHEIRTPMNGIIGMTELTLDS-DLNRSQRENLLLVHSLARSLLLIIDDILDISK 440
                 799***********************8775.89****************************98 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.6e-05      0.11       6      80 ..     501     583 ..     496     632 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
  HATPase_c_3   6 AlaelvdNsld...Adaen..........vkievnknrgktgeivieDdGkGmseeelknalr.latsskeakrkstslGkkGiGlklA 80 
                  +++ lv N++    +   +          + + ++++++ t e+++ D G G+ +++l   +  + + + +   + + +G  G+Gl  +
   CDO72026.1 501 VITNLVGNAIKftpS---KvsrkghvalsCRLLAKDDQHVTLEFCVSDTGIGIAKDKLTMIFDtFCQADGS---TTREYGGTGLGLSIS 583
                  666777777774441...22334444444777777888889*******************99625555555...789999999997444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.13     4e+02      52      79 ..      34      61 ..       4      66 .. 0.83
   2 ?   -0.2   0.0      0.32   9.5e+02      51      81 ..     157     187 ..     152     203 .. 0.87
   3 ?    5.9   1.0    0.0039        12      18      67 ..     344     394 ..     340     422 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
  CENP-F_leu_zip 52 aevetlkeeieelaeelreleldLvalr 79
                     e+ +lk+ ++++ ++l+ l ++++ ++
      CDO72026.1 34 GEMLELKTTVNQMVARLSILASEVTRVS 61
                    5788899999999999999999988776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
  CENP-F_leu_zip  51 kaevetlkeeieelaeelreleldLvalrse 81 
                     + e+  lke ++ ++e+l+ +  +++ + +e
      CDO72026.1 157 RGEMLDLKETVNGMTESLSLFADEVTRVAKE 187
                     6789999***********9999999887766 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0039
  CENP-F_leu_zip  18 kadsLkdkvenLerelemseenqekvileaEtskaevet.lkeeieelaee 67 
                     + dsLk +++++ ++l +s ++++++   aE +    ++ l ++ +e+++ 
      CDO72026.1 344 EMDSLKTQINQMVSNLRDSIQKNTAAREAAELANRSKSEfLANMSHEIRTP 394
                     789999999999999999999999999999966444333255555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.50
# Mc/sec: 5528.16
//
Query:       CDO72027.1  [L=381]
Description: hypothetical protein BN946_scf184943.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-43  148.8   0.1    2.5e-43  148.5   0.1    1.1  1  Peptidase_C13  Peptidase C13 family
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.33   11.2   0.0    1.7  1  ArgoMid        Mid domain of argonaute


Domain annotation for each model (and alignments):
>> Peptidase_C13  Peptidase C13 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.1   2.8e-47   2.5e-43       1     227 [.      27     258 ..      27     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 2.8e-47
                    EEEEEEE---SGGGHHHHHHHHHHHHHHHCTT--GGGEEEEE---STT-TT-SSTT--BSSTT.--B-STT.--ESBEGGG-SHHHHHHHHH..T- CS
  Peptidase_C13   1 lyavlvAGsngydnyrhqadvchayqllkkkglkdenivvvmydDiaereenPlagkiinkpk.gedvykg.vkidYtgkkvtkenflavll..Gd 92 
                    ++avlv+ s+++ nyrh a++  +y+++k+ g++d ni+++  dD+a +++n ++g ++++     d+y   +++dY+g +vt enfl vl+  G 
     CDO72027.1  27 NWAVLVCASRYWFNYRHMANALGMYRTVKRLGIPDSNIILMLADDVACNPRNKFPGCVYSSSAkTLDLYGDnIEVDYRGYEVTVENFLRVLTalGR 122
                    6**********************************************************87662679996659******************83354 PP

                    TC.G..TT-------TTSEEEEEEES-EETTEEE-SSSSEEEHHHHHHHHHHHHHCT--SEEEEEEESTTGGGGTTTS-TTSSEEEEESS-TTS-- CS
  Peptidase_C13  93 ks.v..gsgkvlksgkeDnvfiyltdhGapgvlevpeeddleakdLaeaLkkmhakkkykklviyleaceSgsmfeellkdinvyaltAanadess 185
                     +     s+++l++    nvfiy+t hG++++l++ ++++++a d+a+a ++m +kk+y++l++++++c++  m ++ + + nv+a+ ++  +e+s
     CDO72027.1 123 VEpSvpRSKRLLTDD-RSNVFIYMTGHGGNEFLKFQDSEEISAFDIADAVAQMWEKKRYNELFFMIDTCQANTMYSK-FYSPNVLATGSSVIHENS 216
                    444256666666665.569**********************************************************.9***************** PP

                    BEECE.CTTTTCEEEEHHHHHHHHHHHH.S-TTT-BHHHHHHH CS
  Peptidase_C13 186 fgtycedeedgtylgdlfsvawledsdd.edlsketlekqfel 227
                    ++   +d ++g    d++   +l+ ++  +++s++t+++ f++
     CDO72027.1 217 YSHE-NDRDIGVAVIDAYTHYVLQFMEGiNKTSQATMQDLFDT 258
                    ***4.4899999999*9988777777765668899****9986 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.7e-05      0.33      19      50 ..      23      54 ..      15      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
     ArgoMid 19 akikkWAilcfasqrkvkenkledfikqlvki 50
                 + ++WA+l++as+ +++++++++ + +++ +
  CDO72027.1 23 SHTNNWAVLVCASRYWFNYRHMANALGMYRTV 54
                57899******************999888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.53
# Mc/sec: 2171.59
//
Query:       CDO72028.1  [L=263]
Description: hypothetical protein BN946_scf184943.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 1603.86
//
Query:       CDO72029.1  [L=558]
Description: hypothetical protein BN946_scf184943.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-24   86.6   0.0    1.5e-21   76.9   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.2e-09   36.5   0.0    1.6e-07   31.8   0.0    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.026   13.7   0.1       0.11   11.7   0.0    1.9  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.096   12.9   0.8        8.3    6.7   0.1    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   3.3e-25   1.5e-21       2     245 ..      15     301 ..      14     313 .. 0.78
   2 !    7.5   0.1   0.00048       2.1     260     291 ..     385     416 ..     367     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 3.3e-25
                  SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....................HHHHCHHHHCCCCHCCTCE CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias....................evvkklnqgielllgeevv 76 
                   v+v+G+  +G +aa  laq   +  +v+lv +++ ++n+  +l+  ++  +++++ +                     e  + l+ +++l ++  v+
   CDO72029.1  15 TVAVLGASYGGARAASLLAQglpQHWRVVLV-DRNSHMNHLYVLPRYAVLPGHEHKAFIpydnvflppatasdassptpESPNDLSRHVRLHAN--VL 109
                  69******************9988*******.77777777777754444333333333348***************999666788889888888..99 PP

                  EEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BC.TCTTC........TTBEECCSECHHHHHHCCSS-T.........SEEEEES-SH CS
                  xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxx.......xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxx RF
  Pyr_redox_2  77 kidpgkkkvklekkke.....gdeekiaydklvlAtGssprdl.gipGv.......aenvgklvrtldsaealklkllp.........krivvvGgGy 152
                  ++ +++ +++l k+       +  +++ +++lv A Gs+   + ++ G        +     +v+ ++ +++   ++l+          +++vvGgG+
   CDO72029.1 110 SL-REH-ELTLDKSFPehgifD--RTLRFEYLVYALGSHLPSPiNLWGPvadeevdKS---GVVDVVRGTKEGGVAWLKrfqkrvqraSSVLVVGGGA 200
                  99.444.788855444677543..69************55555555555544444333...344555555555555555777888888888******* PP

                  HHHHHHHHHHHH..T-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEE..EEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 153 iGvElAaalakl..gkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge....kle..vvledgeeidadlvvvavGvrpste 242
                   G+ +A  +a++  + +vtl++ r rll+ +d+++ a++   l + +v + lg +   +  ++      +e  v +++g+ei a+lv++++G +p+t+
   CDO72029.1 201 LGIQYATDIAEIypATRVTLLHSRHRLLPRFDEAMHAEILSTLSALNVCTILGDRLDLASLEKGadasGAEriVRTQSGREIRAELVLLCTGQTPNTT 298
                  ********999877789***************************************64444444767744478************************9 PP

                  HCS CS
                  xxx RF
  Pyr_redox_2 243 lle 245
                  ll 
   CDO72029.1 299 LLH 301
                  985 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00048
                  --TTSBESSTTEEE-GGGCTECCSS--HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 260 vdeflrtnvpgiyaiGDvaggkggpelaqaAv 291
                   d++ r+  ++i+aiGD a+  g ++  ++A 
   CDO72029.1 385 EDPHTRVAAEHIFAIGDAADAFGAVNAGHNAF 416
                  5899999************6666666666665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.074   3.3e+02       2      34 ..      16      51 ..      15      56 .. 0.79
   2 !   31.8   0.0   3.5e-11   1.6e-07       1      63 [.     192     256 ..     192     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.074
                EEEECSSHHHHHHHHHHHH.TTS..EEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalae.lgk..kVtvversdkl 34
                v+v+G++y g  +A+ la+ l +  +V +v+r++++
  CDO72029.1 16 VAVLGASYGGARAASLLAQgLPQhwRVVLVDRNSHM 51
                89**************98756643478888887766 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 3.5e-11
                 EEEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg..kkVtvversdkllrllDeeaskilqeklekngievllntkv 63 
                 +v+vvGgG +g+ +A+ +ae+    +Vt+++ + +ll+ +De++ +++   l+++++  +l+ ++
  CDO72029.1 192 SVLVVGGGALGIQYATDIAEIYpaTRVTLLHSRHRLLPRFDEAMHAEILSTLSALNVCTILGDRL 256
                 699*****************87669******************************9998888765 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.3   1.4e+03     187     228 ..       9      51 ..       4      54 .. 0.78
   2 ?   11.7   0.0   2.4e-05      0.11     186     242 ..     185     241 ..     172     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.3
  K_oxygenase 187 ellakkriaVvGsGqSaaeifedllrr.qkkvelklvtrseal 228
                  + +a+k++aV G+   +a  +  l++   ++  + lv r++++
   CDO72029.1   9 SIQASKTVAVLGASYGGARAASLLAQGlPQHWRVVLVDRNSHM 51 
                  578999*******999999999999984446888888887766 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.4e-05
  K_oxygenase 186 eellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfvneifs 242
                  ++ +++ +++VvG+G  + + + d+++ ++++ ++l+ ++++l p  d  +  ei+s
   CDO72029.1 185 KRVQRASSVLVVGGGALGIQYATDIAEIYPATRVTLLHSRHRLLPRFDEAMHAEILS 241
                  3478999*****************************************999999987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0018       8.3       1      30 [.      18      50 ..      18      51 .. 0.89
   2 ?    3.9   0.1     0.014        62       1      30 [.     195     226 ..     195     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
                   EE--SHHHHHHHHHHHC...CTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak...agfdvlllekrdr 30
                   ++Ga  +G+ aA+lLa+   ++ +v+l++++++
     CDO72029.1 18 VLGASYGGARAASLLAQglpQHWRVVLVDRNSH 50
                   79**************9765588*******988 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
                    EE--SHHHHHHHHHHHC.C.TEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak.a.gfdvlllekrdr 30 
                    +vG+G+ G  +A  +a+ +   +v+ll +r+r
     CDO72029.1 195 VVGGGALGIQYATDIAEiYpATRVTLLHSRHR 226
                    8************9999644558999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3677.25
//
Query:       CDO72030.1  [L=345]
Description: hypothetical protein BN946_scf184943.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.019   15.1   0.5      0.019   15.1   0.5    2.0  2  DUF2545          Protein of unknown function (DUF2545)
       0.44   10.6  17.3        1.8    8.6   0.4    2.4  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF2545  Protein of unknown function (DUF2545)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.5   2.2e-06     0.019      25      72 ..     124     170 ..     118     175 .. 0.86
   2 ?   -1.2   0.2      0.26   2.3e+03      33      40 ..     234     241 ..     202     269 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-06
     DUF2545  25 avaaissllgmviLaaliyfftlwltdGnelvsGifllLaPaiGliir 72 
                 + aa+s++l+ vi a++++ff +  +d    v+ i +lLa a+Gli+r
  CDO72030.1 124 VCAALSTILVQVIAAGVLFFFGVGSQDA-MAVTIIGTLLANAAGLILR 170
                 56899*****************987765.558889***********98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.26
     DUF2545  33 lgmviLaa 40 
                 ++++iL  
  CDO72030.1 234 VALLILWM 241
                 22223322 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4   0.00021       1.8      44      99 ..     123     185 ..     121     191 .. 0.41
   2 ?    5.7  10.8    0.0016        14      29      88 ..     221     280 ..     217     307 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00021
  Phage_holin_3_6  44 gvlallalllllvala.....lalaa.lwlaalivaavllvlagvlalvglk..klkkakplpe 99 
                      +v+a+l+ +l+ v +a     ++++   ++a +i++ +l+ +ag+ +l+  +  +l++ +++pe
       CDO72030.1 123 VVCAALSTILVQVIAAgvlffFGVGSqDAMAVTIIGTLLANAAGL-ILRHQQqkELRSTRAVPE 185
                      555555555555555422211333313555555554333333333.332222124444444555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0016
  Phage_holin_3_6  29 eakragsgagllgaagvlallalllllval..a.lalaalwlaalivaavllvlagvlalvgl 88 
                       a+ +g++a l ++a++++ +all+++ +l  + ++l    la   ++a++ v a+   + g 
       CDO72030.1 221 RASTLGVLATLGVVALLILWMALLVFTTTLrrVdAWL---VLAQCALGAAYTVYAARTWRCGA 280
                      5677888889999999999999999999997634333...57777778888777766555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2312.92
//
Query:       CDO72031.1  [L=519]
Description: hypothetical protein BN946_scf184943.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-08   32.1   0.3    1.9e-07   31.0   0.3    1.5  2  Peptidase_M20  Peptidase family M20/M25/M40
    1.9e-06   27.7   0.0    5.9e-06   26.2   0.0    1.8  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.79   7.1e+03     125     146 ..     101     126 ..      76     163 .. 0.56
   2 !   31.0   0.3   2.1e-11   1.9e-07       3     172 ..     182     449 ..     180     488 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.79
                    ESHEEEC....CHHHHHHHHHHHHHH CS
                    xxxxxxx....xxxxxxxxxxxxxxx RF
  Peptidase_M20 125 gapvtln....dsplvkalaeaaeel 146
                    ++p++++    +s+++ ++++ ++el
     CDO72031.1 101 EKPPAYDsgglSSDVISTMENKLKEL 126
                    33444443444455555555555544 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 2.1e-11
                    EEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Peptidase_M20   3 gsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavfel 97 
                    +s +D++p                 G  +G+G++    + +a+  a++a   e+ + +gtivll +p+EE g gG   lle g+    ++da +  
     CDO72031.1 182 NSEMDALP-----------------GIGHGCGHNLIAMSGVAVSLAIQAALIEH-DIPGTIVLLGTPAEEEG-GGKIVLLErGA--YVGMDACIMS 256
                    67788888.................777******98777777777766655554.459************65.88888888433..3456664444 PP

                    EEESSSBTCHSTETEEEE.............................................................................. CS
                    xxxxxxxxxxxxxxxxxx.............................................................................. RF
  Peptidase_M20  98 hieepgileagklaigvv.............................................................................. 115
                    h   p+   ++  +i ++                                                                              
     CDO72031.1 257 H---PTSGPDNFSGIWPGvacqhmdveffghgahagsapwegqnaldaafvayagisalrqqikpdqrvhgivvgkdwapngtsegclvmssssdi 349
                    4...44444222333444558888888888888888888888888889999999999999999999999999999999999999999999****** PP

                    ..........................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH.T CS
                    ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.x RF
  Peptidase_M20 116 ..........................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsg.pggtdarff.a 167
                                                              k+ev+l  g+   + n + l +  a+++ + +g ++ ++  g   +td++ + +
     CDO72031.1 350 gtvipdyaklryivraanwvelealrdrviacfdaaalatscKIEVKLSAGYFELRNN-DVLGRQYANVVGQRYGMTTVRTSEGaKFSTDFGNVtH 444
                    **************************************99655666644555555555.8888888888888889886665666789999999954 PP

                    TTEEE CS
                    xxxxx RF
  Peptidase_M20 168 giptv 172
                     +p++
     CDO72031.1 445 TLPAL 449
                    44533 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.6e-10   5.9e-06       9     105 ..     277     386 ..     274     390 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.6e-10
                 EEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.........TCCTCCCCCEECCE-C...................CCCEESSEEEEEEEEE CS
   M20_dimer   9 gkitvkgkagHsg.apgagaNAieklarllaeledeegdia....eerslprttlnvtgiegGs...................aknvipdeaeakidiR 83 
                 + +++ g+++H+g ap  g+NA+ ++  + a + +++++i+                 gi  G                      +vipd+a++ +++R
  CDO72031.1 277 MDVEFFGHGAHAGsAPWEGQNALDAAFVAYAGISALRQQIKpdqrV-----------HGIVVGKdwapngtsegclvmssssdIGTVIPDYAKLRYIVR 364
                 67999******************************99888855551...........44444444422222222243333345667************* PP

                 HHHHHHHHHHHHHHHHHHTSCC CS
   M20_dimer  84 llpgedpeevleeieeilekea 105
                   +  ++e++++++ + ++++a
  CDO72031.1 365 AANWVELEALRDRVIACFDAAA 386
                 **************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3584.22
//
Query:       CDO72032.1  [L=260]
Description: hypothetical protein BN946_scf184943.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-45  155.0   0.0    1.5e-43  149.0   0.0    2.2  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.019   15.4   0.8      0.058   13.8   0.2    2.1  2  Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)
      0.047   13.0   0.0      0.065   12.6   0.0    1.1  1  DUF2235        Uncharacterized alpha/beta hydrolase domain (D
       0.07   12.7   0.0      0.093   12.3   0.0    1.2  1  DLH            Dienelactone hydrolase family
      0.093   12.4   0.0        3.7    7.1   0.0    2.5  3  Abhydrolase_1  alpha/beta hydrolase fold
       0.56   10.0   1.4          2    8.1   1.3    2.0  2  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   0.0   4.9e-47   1.5e-43       4     210 ..       3     223 ..       1     225 [. 0.96

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 4.9e-47
        FSH1   4 kkkiLcLhGytqsgeiFraktsalrkllkk....................lnvelvyldaplelaekadlpkseseeee..............kseeee 68 
                  kk+L+LhGy+qs++iF+++++alrk + k                    +++ +v++dap++l ++adl ++ +++++              ++  + 
  CDO72032.1   3 AKKVLMLHGYAQSATIFSKRLGALRKTCGKdiefgtvactqcmymnpncsQQYLAVFVDAPHVL-TPADLAEAFQSSNDssslddlgapeaatETDPAL 100
                 69**************************************************************.9****99888777789*********999899999 PP

        FSH1  69 esraWfrkkdekneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepkyeeyyeedkiqtptLhv 167
                   r+W+  ++   +  gle+s+  +++y+++ + + Gi GFSqGaa+aa++a+l+                 ++Gf++++p  ++ +  ++++tptLh+
  CDO72032.1 101 APRGWWSVDAARTKTVGLEDSIMLLREYLTKDH-YEGIFGFSQGAAMAAIMAALVT----------------AAGFRPKSPLCDAIF-LPSFSTPTLHI 181
                 9******************************99.*****************98766................69*************.99********* PP

        FSH1 168 lGelDtvvdeerseaLaeafknsskvlkHpggHfvPnkkeyvd 210
                 lG++D +v eer+++L ++ +n ++v +H+ggHfvP+k+++++
  CDO72032.1 182 LGRNDVIVVEERAKSLLDVSAN-KRVEYHDGGHFVPSKANWRN 223
                 **********************.***************99876 PP

>> Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   1.9e-05     0.058      38      73 ..     145     180 ..     135     183 .. 0.91
   2 ?   -1.9   0.0       1.5   4.6e+03      52      66 ..     214     228 ..     211     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
  Cyd_oper_YbgE  38 llwavcagvvhGvGFrprkalwrllFsPllallill 73 
                     + a+ a++v   GFrp++ l  ++F+P ++ + l 
     CDO72032.1 145 AMAAIMAALVTAAGFRPKSPLCDAIFLPSFSTPTLH 180
                    57899**************************99875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
  Cyd_oper_YbgE  52 FrprkalwrllFsPl 66 
                    F+p ka wr ++ ++
     CDO72032.1 214 FVPSKANWRNFLKAY 228
                    99*******988766 PP

>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.065     100     122 ..     137     159 ..     105     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
     DUF2235 100 lfGFSRGAytaRalagmlekvGl 122
                 +fGFS GA +a ++a +++ +G 
  CDO72032.1 137 IFGFSQGAAMAAIMAALVTAAGF 159
                 8******************9997 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.1e-05     0.093      82     172 ..     118     203 ..      85     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
         DLH  82 lkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealka 172
                 l++++  l++   ++++  g+ Gf  G+a+a  +aa v     a++f ++sp  + +  +  ++p l ++g +D ++  + ++ l    ++
  CDO72032.1 118 LEDSIMLLREYL-TKDHYEGIFGFSQGAAMAAIMAALV----TAAGFRPKSPLCDAIFLPSFSTPTLHILGRNDVIVVEERAKSLLDVSAN 203
                 456666666666.5667779*****************9....699****99999***********************99998887665544 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         1   3.1e+03       3      19 ..       6      22 ..       5      31 .. 0.86
   2 ?    7.1   0.0    0.0012       3.7      54      93 ..     113     153 ..      93     162 .. 0.84
   3 ?    2.1   0.0     0.042   1.3e+02     205     252 ..     175     215 ..     165     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1
                   EEEE-STTTCGGGGTTG CS
  Abhydrolase_1  3 lvilhGlpgssdvwaer 19
                   +++lhG++ s+ ++ +r
     CDO72032.1  6 VLMLHGYAQSATIFSKR 22
                   799*****999998875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0012
                    HSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHH CS
  Abhydrolase_1  54 ygtasvaddldrildalgddklt.lvGhSmGGmialayaae 93 
                      t+ ++d++  +++ l  d+   + G+S+G ++a+ +aa+
     CDO72032.1 113 TKTVGLEDSIMLLREYLTKDHYEgIFGFSQGAAMAAIMAAL 153
                    4667788888899**************************96 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.042
                    HCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 205 relknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHla 252
                            ptl i g++D +v + +a++ l+   +  ++v + d+gH++
     CDO72032.1 175 ST------PTLHILGRNDVIVVEeRAKSLLD--VSANKRVEYHDGGHFV 215
                    34......***************99999998..44447*********97 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.71   2.1e+03      15      29 ..       4      18 ..       2      27 .. 0.76
   2 ?    8.1   1.3   0.00068         2     109     120 ..     137     148 ..     135     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.71
                   EEEEEE--TT--SHH CS
  Abhydrolase_2 15 avviflHGlGdsgha 29
                   + v++lHG+  s+  
     CDO72032.1  4 KKVLMLHGYAQSATI 18
                   679999**9887755 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00068
                    EEEETHHHHHHH CS
  Abhydrolase_2 109 igGFSqGaalal 120
                    i+GFSqGaa+a 
     CDO72032.1 137 IFGFSQGAAMAA 148
                    89********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1720.34
//
Query:       CDO72033.1  [L=776]
Description: hypothetical protein BN946_scf184943.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-23   82.2   0.0    3.7e-23   81.4   0.0    1.4  1  Bromodomain  Bromodomain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   2.1e-27   3.7e-23       3      83 ..      72     152 ..      70     153 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 2.1e-27
                  HHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain   3 kilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  k++++++++++++ Fl+pvdp+++p y +vi++P+dL t+  k+e++ Yksl++f  dl+l+ +Na+++n++g+ +y  ae
   CDO72033.1  72 KLITQIKKKDDYAFFLQPVDPAQVPGYADVISRPMDLGTMTTKVERGRYKSLEEFASDLRLVTTNAKTFNPPGTIYYTEAE 152
                  7899*************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5337.04
//
Query:       CDO72034.1  [L=124]
Description: hypothetical protein BN946_scf184943.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.47
# Mc/sec: 793.21
//
Query:       CDO72035.1  [L=435]
Description: hypothetical protein BN946_scf184943.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        2.6    7.8   5.1       0.61    9.9   0.3    2.2  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   3.4e-05      0.61      95     184 ..     115     209 ..      90     235 .. 0.66
   2 ?   -1.0   0.1      0.07   1.3e+03     137     176 ..     259     298 ..     231     307 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.4e-05
  FA_desaturase  95 yllrlllgllvlg.....wllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllalvl.... 180
                      + ++lg lv       ++ + +   ++ +++ r++ ++     + +++w  +l+  +++ la+++++g ++  ++++ +++++++lal+     
     CDO72035.1 115 QNASWVLGRLVRDyenrkFKSGSL---TIAFYRTRKDGPEAGVPARDWVYWSGVLV--ILAQLAISVVPGALHGnWIVLIVAVGGTVLALLGsgmp 205
                    333333333333322211444333...66677777777777777788888888888..77788888878877777888888888888888765555 PP

  FA_desaturase 181 nyve 184
                    ++ e
     CDO72035.1 206 QWRE 209
                    5555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.07
  FA_desaturase 137 llawlllllawlglwlalllllglalllwlvplllllfll 176
                    l + ++  l ++ ++++ll + gl + +w++ ++ +l ++
     CDO72035.1 259 LSTSFMSGLLAISWIVLLLTVEGLDGDAWYLLAIGGLGMV 298
                    3333333333334444444444444446666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2878.09
//
Query:       CDO72036.1  [L=395]
Description: hypothetical protein BN946_scf184943.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-123  410.9   0.0   3.6e-123  410.8   0.0    1.0  1  NUP       Purine nucleoside permease (NUP)


Domain annotation for each model (and alignments):
>> NUP  Purine nucleoside permease (NUP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.8   0.0    2e-127  3.6e-123       5     313 .]      56     369 ..      33     369 .. 0.94

  Alignments for each domain:
  == domain 1  score: 410.8 bits;  conditional E-value: 2e-127
         NUP   5 vivsmFegEaqawlerlk...laenitvpglsplypevhcnadgsvcqlvtGegeinaaasimaLvlsprFdLtktYfliaGiaGvnPkaatiGsvafa 100
                 ++v  F +E  aw +  +   l +nitvpg+splyp+ hc+ dg+vcq+vtG geinaa++i+aLv+sp F+L++tYfliaGiaG++Pk +t+Gsv+fa
  CDO72036.1  56 FVVYQFGEEGRAWNDIPEfdlLGRNITVPGFSPLYPQAHCTMDGDVCQMVTGAGEINAASTITALVHSPLFNLSRTYFLIAGIAGISPKLGTLGSVTFA 154
                 45555559*****965558999***************************************************************************** PP

         NUP 101 ryavqvdlqyeidarelpkdwstgylplgtkepneypkeiygtevfelneaLrdwAvelakkakLkdseeaaayrakY....eyaaAqkpPsvvkcdtl 195
                 r+ vqv+lq+e+dare+p ++stgylp+g+ +p+eyp+ +ygtevfe+n++Lr++A+++a+k +L+d+e+ ++yra+Y    e+aaA+ pPsvv+cdt+
  CDO72036.1 155 RFSVQVALQHEFDAREMPPGFSTGYLPQGSFTPDEYPRRLYGTEVFEVNDDLRHVAIAMAQKGRLSDDERSREYRARYrsspEFAAATGPPSVVACDTA 253
                 *********************************************************************************99**************** PP

         NUP 196 tsdtywsGkllseaaenltkllTngtgtycttaqEdnatleallraakaglvDfsRvivlRtasnFdrpppgvsaleslleaeqggfeaalenlylaGs 294
                 t+dt+wsG+ll+ea+e++t+l+Tngt++yctt+qEd++tl+allr a  gl+DfsR+i++RtasnFdrp+ g+sa+++l+    +g+e a+ n+ laG+
  CDO72036.1 254 TADTFWSGRLLAEAFEDTTRLFTNGTAKYCTTQQEDSGTLAALLRGALVGLIDFSRIIIMRTASNFDRPYLGQSAAANLF--LMSGYELAIMNIPLAGV 350
                 ********************************************************************************..459************** PP

         NUP 295 evveeivknWestykkgvk 313
                 +vv++i+++W  ++++g+k
  CDO72036.1 351 PVVQGIISQWVGKFEQGIK 369
                 ***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2710.75
//
Query:       CDO72037.1  [L=421]
Description: hypothetical protein BN946_scf184943.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.9e-108  361.2   8.1    1.3e-74  251.4   6.2    2.0  2  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   8.7e-36   1.6e-31      49     152 ..      85     190 ..      47     206 .. 0.80
   2 !  251.4   6.2     7e-79   1.3e-74     169     325 .]     224     380 ..     219     380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 8.7e-36
  Glyco_transf_15  49 kPie.denenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeewsyPefideekaakar 141
                         + ++  nA+ll+l+rnsel + ++s+k++e+rFnk+fnYp+vf+n+ pft++fke+++++v+ + ++fg+ip+e+w  P++ideekaa +r
       CDO72037.1  85 IGSNgTRRANAVLLMLARNSELDDAITSVKELEQRFNKRFNYPWVFLNEVPFTDEFKESMSSVVS-GPISFGVIPPEHWYQPDWIDEEKAADSR 177
                      222324455********************************************************.**************************** PP

  Glyco_transf_15 142 eelad..iaygds 152
                       +++   + yg +
       CDO72037.1 178 AQMVAdnVVYGGK 190
                      9997657777765 PP

  == domain 2  score: 251.4 bits;  conditional E-value: 7e-79
  Glyco_transf_15 169 hellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkflkenkefieeknslsflsdddqdtynlCeFwsn 262
                      h+l+++y++YwRveP+++++cd +yD f +m++++k+ygFt+sl+e  +t+ tlWd +k+f++ n++++  +ns+++ls+d++ tyn+C+Fwsn
       CDO72037.1 224 HPLVQRYKWYWRVEPNVHFHCDTDYDPFLFMEENDKLYGFTISLYEWPKTVATLWDAVKEFIDANPQYVPANNSMNYLSNDGGATYNMCHFWSN 317
                      899******************************************************************************************* PP

  Glyco_transf_15 263 feigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdkihffedigyshdp 325
                      fei+++d++r+eay+kfFeyl+skGgf+YerWgdapvhsi++ l++ kd+ihff+digy+hdp
       CDO72037.1 318 FEIANMDLWRGEAYSKFFEYLESKGGFYYERWGDAPVHSIGAGLFARKDQIHFFDDIGYQHDP 380
                      *************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2918.20
//
Query:       CDO72038.1  [L=247]
Description: hypothetical protein BN946_scf184943.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1785.86
//
Query:       CDO72039.1  [L=138]
Description: hypothetical protein BN946_scf184943.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-32  110.9   0.0    5.1e-30  104.5   0.0    2.0  2  Acid_PPase  Acid Phosphatase


Domain annotation for each model (and alignments):
>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.2   0.00083        15       1      11 [.       4      14 ..       4      15 .. 0.90
   2 !  104.5   0.0   2.8e-34   5.1e-30      76     169 .]      15     111 ..      14     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.00083
                ---SEEEE-ST CS
  Acid_PPase  1 elpklivFDLD 11
                +lpkl++FDLD
  CDO72039.1  4 RLPKLVAFDLD 14
                58********* PP

  == domain 2  score: 104.5 bits;  conditional E-value: 2.8e-34
                 HHHHHHHTT-G..............GGESEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHHHHH CS
  Acid_PPase  76 arelLkllein....dakekekklldvfddveiykgsktkhfeklkkktgieyedmlfFDdesrnievesrlgvtfvlvpdGltreefekglkewrkk 169
                 ar++L+ll i     +++e+ +++ ++fd++eiy+gsk+khf++l++ktg++y++mlfFDde+rn eves lgvtf+lvp+G+  ++fe+gl+ewrk+
  CDO72039.1  15 ARQALNLLLIPppagHKDESPTPAVKFFDQMEIYPGSKIKHFKELHRKTGLPYSEMLFFDDERRNSEVES-LGVTFCLVPNGVDDRTFEHGLTEWRKR 111
                 899********999999999**************************************************.************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1132.22
//
Query:       CDO72040.1  [L=598]
Description: hypothetical protein BN946_scf184943.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.8   3.2    1.1e-08   34.8   3.2    2.7  4  F-box-like  F-box-like
     0.0062   16.9   2.1       0.77   10.3   0.1    4.7  7  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.98   8.8e+03       3      10 ..      23      30 ..      22      31 .. 0.84
   2 !   34.8   3.2   1.2e-12   1.1e-08       3      46 ..      55     102 ..      53     104 .. 0.79
   3 ?   -3.6   0.0       1.3   1.1e+04      11      17 ..     219     225 ..     217     230 .. 0.75
   4 ?   -3.7   0.0       1.3   1.2e+04      28      39 ..     375     386 ..     373     388 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.98
  F-box-like  3 rLPdEiLl 10
                +LP ++Ll
  CDO72040.1 23 SLPRDLLL 30
                8*****98 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 1.2e-12
  F-box-like   3 rLPdEiLlqIFsyL.ppsd...LlrlalVCrrWrrvaldtplLWrrlv 46 
                  LP E+L++IF ++  +++   +l l  VCr+W  +a++tp+LWrrl+
  CDO72040.1  55 MLPSELLIEIFLCVqRDYEltrWLVLPSVCRYWFYIASTTPELWRRLT 102
                 69*********7653333422266667*******************97 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.3
  F-box-like  11 qIFsyLp 17 
                  IFs+L+
  CDO72040.1 219 SIFSQLH 225
                 79**985 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 1.3
  F-box-like  28 CrrWrrvaldtp 39 
                 C rW ++   +p
  CDO72040.1 375 CQRWPSASVADP 386
                 99**88776665 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0011        10      20      33 ..     171     185 ..     162     196 .. 0.68
   2 !   10.3   0.1   8.6e-05      0.77       1      36 [.     176     216 ..     176     224 .. 0.78
   3 ?    1.2   0.0     0.063   5.6e+02       1      32 [.     203     231 ..     203     239 .. 0.75
   4 ?    0.4   0.0      0.11   9.6e+02      15      31 ..     243     259 ..     222     263 .. 0.64
   5 ?   -0.7   0.0      0.25   2.2e+03      18      33 ..     419     434 ..     412     442 .. 0.78
   6 ?   -0.2   0.1      0.16   1.5e+03      13      30 ..     438     458 ..     424     461 .. 0.60
   7 ?   -2.9   0.0       1.2   1.1e+04      21      30 ..     510     519 ..     494     522 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0011
                 H..H-TT--EEE-.-S CS
       LRR_4  20 e..klpnLkeLdLsgN 33 
                    ++p+L++L+L +N
  CDO72040.1 171 DshSMPQLRSLYL-HN 185
                 23359********.66 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.6e-05
                 SS--EEE--SS---E-S-.HH...H.-TT--EEE-.-S--- CS
       LRR_4   1 pnLevLdLsnNqltdipl.le...k.lpnLkeLdLsgNnli 36 
                 p+L++L+L+n +++d+ + l+     lp+L++L   g+n +
  CDO72040.1 176 PQLRSLYLHNMMVRDVHPsLSlsaErLPSLRSLRAYGMNIL 216
                 78*******99999877774445755*******98777655 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.063
                 SS--EEE--SS---E-S-HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLdLsg 32 
                 p+L++L   + ++ + +    + +L++L L +
  CDO72040.1 203 PSLRSLRAYGMNILSSSI---FSQLHTLRLAD 231
                 689999999866777555...89999998844 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.11
                 E-S-HHH-TT--EEE-. CS
       LRR_4  15 diplleklpnLkeLdLs 31 
                  i+  ++l n ++L++s
  CDO72040.1 243 FIGMARNLSNIEHLHVS 259
                 45555579999999885 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.25
                 -HHH-TT--EEE-.-S CS
       LRR_4  18 lleklpnLkeLdLsgN 33 
                 +l++ p L++L + +N
  CDO72040.1 419 FLGNTPGLHVLQIESN 434
                 4666999999999777 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 0.16
                 --E-S-....HHH-TT--EEE- CS
       LRR_4  13 ltdipl....leklpnLkeLdL 30 
                 ++  ++    l+ lp L+eL++
  CDO72040.1 438 MKNMDWratlLA-LPELRELTV 458
                 555555445355.999999976 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 1.2
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                  +p+Lk L L
  CDO72040.1 510 PCPDLKCLRL 519
                 3788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4227.99
//
Query:       CDO72041.1  [L=117]
Description: hypothetical protein BN946_scf184943.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-12   47.2   1.6    3.6e-12   46.3   1.6    1.4  1  Hva1_TUDOR  Hypervirulence associated proteins TUDOR domain


Domain annotation for each model (and alignments):
>> Hva1_TUDOR  Hypervirulence associated proteins TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   1.6     2e-16   3.6e-12       5      59 .]      46     107 ..      46     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2e-16
  Hva1_TUDOR   5 swkwggGestGkVeevl....tedteakg..vtvnaskddPryeiend.ntGkevahkesel 59 
                 +w+wggG+++G+V+e++     e t+ kg  +t+na++ dP++ i +d +  ++v+++++el
  CDO72041.1  46 TWRWGGGTAEGEVAEIVeegkAEVTSNKGntITRNAKPGDPAVKIARDgRPKNDVVKLAHEL 107
                 6*******************9999***********************977789*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 874.15
//
Query:       CDO72042.1  [L=710]
Description: hypothetical protein BN946_scf184943.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-16   57.8   0.0    1.4e-15   56.8   0.0    1.6  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
     0.0017   18.7   0.2     0.0043   17.4   0.2    1.7  1  DUF4413        Domain of unknown function (DUF4413)
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.032   14.1   0.1    1.6  1  DUF659         Protein of unknown function (DUF 659)
       0.13   12.6   0.1        0.4   11.0   0.1    1.8  1  DUF2197        Uncharacterized protein conserved in bacteria 
       0.77   10.1   4.5          3    8.2   0.5    3.3  3  HBS1_N         HBS1 N-terminus


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0     4e-19   1.4e-15       1      85 [.     588     666 ..     588     667 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 4e-19
                    HHHHHHT------TT....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHH CS
  Dimer_Tnp_hAT   1 eldkyleelpvlrrkeksefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqw 85 
                    eld yl++ +  +       d+ +ww   ++ +P ls++a d+L+ip++s+  Er+Fs +   l   rn+l +++  allc+  w
     CDO72042.1 588 ELDIYLKA-EPEDV-----TDPFSWWYACRHAFPRLSRMALDYLAIPATSVDVERVFSRGRLLLPHVRNRLGSQTTRALLCVGAW 666
                    78889999.55554.....59**************************************98888888**************9888 PP

>> DUF4413  Domain of unknown function (DUF4413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   1.2e-06    0.0043       6      78 ..     429     507 ..     425     526 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
     DUF4413   6 pTanlfFneilevkkllkewakseddlls...kmaekmqekfdkywk..ksnlllaiaviLDPryKl.kyvefalkkiy 78 
                 p+  ++ + + ++ ++l+++ ++e+++ +   + ++  ++++ ky++  +s  ++ ia++L PryK   + +  ++++ 
  CDO72042.1 429 PSLASVIPAMEHMSRTLDSYIQDEEHYEHsirAALSLAKKTLVKYYNltDSADTYRIAMVLHPRYKTaYFKKLNWTRLW 507
                 566677777888888898888887765551214444445599****777******************444455565555 PP

>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   9.1e-06     0.032      27     133 ..     158     268 ..     146     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.1e-06
      DUF659  27 kswektgcsillDgwtdkkgrslinflvscpk....GtvFlksvdassekktaeylaelldkvieevgaen.Vvqvitdnasnykkagklleekyptif 120
                  + +++  s ++D wt+ ++   + f+v+ +k     ++ l  v+     +++ +la+ + +v+ e g ++  + v  dnasn+ +   +le   p++ 
  CDO72042.1 158 RTHTRSETSFTTDAWTSPNHCAYVAFSVHFEKdgkpMSMLLDFVELA-VSHSGVNLATAFAEVVHEFGIDEkMLAVTCDNASNNDTMIDALELDVPSFG 255
                 44566688999*******************99754335666666666.899999**************76559******************99999976 PP

      DUF659 121 wtpcaahclnlml 133
                      ++c++ + 
  CDO72042.1 256 GRKMRTRCFDHIA 268
                 6555555555544 PP

>> DUF2197  Uncharacterized protein conserved in bacteria (DUF2197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00011       0.4      27      54 ..      74     103 ..      71     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
     DUF2197  27 rpihtYmCkeCeeRiae..ktkeRaatGkF 54 
                 rp h++ Ck+C+++i +   t+++ +tG+ 
  CDO72042.1  74 RPYHIFSCKKCSHKIDRylDTQDKNSTGNL 103
                 9**************864468999999985 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.18   6.3e+02      16      51 ..      14      49 ..       5      55 .. 0.84
   2 ?    8.2   0.5   0.00084         3      11      37 ..     317     351 ..     296     362 .. 0.77
   3 ?   -0.7   0.0      0.51   1.8e+03      28      39 ..     644     655 ..     642     659 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.18
      HBS1_N 16 eLsdedqarLrscldevrevLgeeaskvtvtekqik 51
                eLs ed +  + +++   + L+e++++v+ +e++++
  CDO72042.1 14 ELSSEDDESPERGTASAESDLEEDNGPVESPEEELE 49
                899999999999999999999999999988888875 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00084
      HBS1_N  11 eeeee........eLsdedqarLrscldevrevLg 37 
                  +++e         Ls+ed+a   + +  vr+vL+
  CDO72042.1 317 GDDDEdglvdelsTLSEEDRAEVLENIRPVRTVLA 351
                 2222235777899*********************9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.51
      HBS1_N  28 cldevrevLgee 39 
                  l++vr+ Lg++
  CDO72042.1 644 LLPHVRNRLGSQ 655
                 689*******54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 4745.53
//
Query:       CDO72043.1  [L=950]
Description: hypothetical protein BN946_scf184943.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 6406.20
//
Query:       CDO72044.1  [L=721]
Description: hypothetical protein BN946_scf184943.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-13   50.2   0.0    4.8e-13   48.7   0.0    1.8  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.7e-17   4.8e-13      17      83 ..     595     662 ..     579     665 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.7e-17
                    ....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHH CS
  Dimer_Tnp_hAT  17 k.sefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcie 83 
                    +  ef++l++w+++++++P l+++a d+L +p+ss+ +E +Fs+++ + + +rn l+  ++e l  ++
     CDO72044.1 595 DsGEFNLLHYWQTHETEFPYLFRVALDILPVPASSVPCEHVFSACKDIDTLRRNALDEGMLEILQVLK 662
                    2579*****************************************99999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4611.68
//
Query:       CDO72045.1  [L=400]
Description: hypothetical protein BN946_scf184943.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-10   40.1   1.0      6e-10   40.1   1.0    1.7  2  Abhydrolase_6  Alpha/beta hydrolase family
    1.1e-09   37.9   0.0    3.8e-08   32.9   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    6.3e-08   32.7   0.0    1.5e-07   31.5   0.0    1.7  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.2e-07   31.6   0.0      3e-06   27.1   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0014   18.8   0.0     0.0033   17.6   0.0    1.5  1  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
      0.021   13.8   0.0      0.031   13.2   0.0    1.2  1  DUF818         Chlamydia CHLPS protein (DUF818)
      0.034   13.7   0.0       0.06   12.9   0.0    1.5  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.059   13.2   0.0       0.12   12.3   0.0    1.4  1  Ser_hydrolase  Serine hydrolase
       0.11   12.2   0.0       0.19   11.4   0.0    1.3  1  PGAP1          PGAP1-like protein
       0.16   11.4   0.0       0.33   10.4   0.0    1.5  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.52   9.3e+02      75     187 ..      10     138 ..       9     150 .. 0.29
   2 !   40.1   1.0   3.3e-13     6e-10       5     197 ..     126     350 ..     122     365 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.52
                    HHHHHHHHHHCC.........EEEEES-..----TTTS----TTHHHHHHTT-C.....CCCHCCHS-HSCCCCHHH....C....CCCHCHCCCG CS
  Abhydrolase_6  75 GGalalaaapla.......lvvgvlldppptalpagllaaalelllallallrl.....lawlsreplprlfladed....a....daawrarlar 150
                    GG+la++   +        l  +++++   +a+p+  ++a+ +++ + +  + +     +++  ++ l++ +   +     a     +++ + l+ 
     CDO72045.1  10 GGLLAML---HKfayfssfL-YACIIAL--LATPFFQRHAVYQHAVRIPWGAKFdlpekYRLAPGKTLNCKLTTSDNvtigAwfvlSEPFYQSLRQ 99 
                    6666666...5544444421.2222222..222333333333333322221111111111222111122211111111111011111222222222 PP

                    HHHHCCHHC.HTTCCHHTT-TTGCEEEC.TT-CHHHHCH CS
  Abhydrolase_6 151 laallaglg.llpaaawadlpvpllvlg.geDplvprll 187
                    ++++l ++  +   +a++++p+ l+ +g ++ ++ pr +
     CDO72045.1 100 ASPSLEQPSlAAVQEAVRTCPTILYFHGnAATRAAPRRV 138
                    222222222122233444444444443344444444444 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 3.3e-13
                    --GC.....G...C.HHHHHHHHCCTCEEEEE--TTSTS-GGCS..--HHH.CHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6   5 HGagssassW...l.vapLaallaagvhvlapDlpGhGrsdppp..ldled.ladl.aalldelaagggpvvlvGHSlGGalalaaapla...... 86 
                    HG  +++ +    + ++ +  +l+  v  la+D++G+G+sd+ p  ++l++ + +  + lld  a  + +v lvGHSlG+ + ++   la      
     CDO72045.1 126 HGNAATRAAPrrvQhYSAFSSRLRTNV--LAIDYRGFGDSDGTPseDGLTEdAKTAwRWLLDQGA-KPEDVMLVGHSLGTGVTSR---LAtflare 215
                    665554333322212444455555556..*********776666335553323333455666665.99999********776666...33333566 PP

                    ....EE.EEES-.............----TTTS----TTHHHHHH.TT-CCCCHCCH....S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTC CS
  Abhydrolase_6  87 ..lvvg.vlldppp...........talpagllaaalelllalla.llrllawlsre....plprlfladedadaawrarlarlaallaglgllpa 163
                        +g  ll+p             +++p++ +   +++ ++ll+ llr  ++++++    +  +lf+a      + ++++ ++ ++++ l+ l  
     CDO72045.1 216 gvKPRGvALLAPFTslssvletydiGGFPILQPLQTFAMGRKLLKkLLR-HEFDTLGvikdINVPLFIA-----HSQNDMDIPHHHSRTLLDVLLD 305
                    6855666888882233333333322222222222222222233333333.4666555565777779999.....8888888888877776664444 PP

                    CHHTT-TTGC.....EEECTT-C.......HHHHCHHCCCHSTTEE CS
  Abhydrolase_6 164 aawadlpvpl.....lvlggeDp.......lvprllerllaqagar 197
                    +++++ pv++      +l +eD          +r ++  l+ ++++
     CDO72045.1 306 PHLPASPVSFpdtpdQILSSEDYatfleaqKQRRAARNELV-RKVE 350
                    44444444444444422256666665322222233333333.4444 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.1e-11   3.8e-08      29     115 ..     147     233 ..     117     265 .. 0.77
   2 ?    3.1   0.0     0.026        47     173     215 ..     259     301 ..     246     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.1e-11
  Hydrolase_4  29 aqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel.plfllGhSmGGliallyl...lrypdkvaglilsaPalkika 115
                  +   +v+a+D+rG+G s+g     ps d +++D++++++ + ++  +   ++l+GhS+G  ++ +++   +r+  k +g+ l aP+ ++ +
   CDO72045.1 147 RLRTNVLAIDYRGFGDSDGT----PSEDGLTEDAKTAWRWLLDQGAKPeDVMLVGHSLGTGVTSRLAtflAREGVKPRGVALLAPFTSLSS 233
                  44568************876....569***********99997776666*************9998887566666899*******998765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.026
  Hydrolase_4 173 llelldamkrleeraakitlPllllhGeaDkvvdpeasrelye 215
                  l +ll+   +++   ++i++Pl++ h+++D  +++  sr l++
   CDO72045.1 259 LKKLLRHEFDTLGVIKDINVPLFIAHSQNDMDIPHHHSRTLLD 301
                  5555555556666678999************999999998876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   8.6e-11   1.5e-07       1     115 [.     122     233 ..     122     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 8.6e-11
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-.TT...HHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehp.fP...aavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalra 92 
                    ++yfHG + +   ++  +++ + ++++l+  v+++dYr   +    P     +eda +a+rwl++q    ga+p+ ++l+G S G   +  +a  +
     CDO72045.1 122 ILYFHGNAATRAAPRRVQHYSA-FSSRLRTNVLAIDYRGFGDSDgTPsedGLTEDAKTAWRWLLDQ----GAKPEDVMLVGHSLGTGVTSRLATFL 212
                    6999999988888877766655.999************765543133111579*************....8**********************888 PP

                    HHTT---EEEEEEESE-SSTSST CS
  Abhydrolase_3  93 rdegepkvagqvliyPvtdlert 115
                    ++e ++k++g++l+ P t l ++
     CDO72045.1 213 ARE-GVKPRGVALLAPFTSL-SS 233
                    887.699*********9877.33 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.7e-09     3e-06       1      91 [.     120     209 ..     120     233 .. 0.87
   2 ?    2.2   0.0     0.066   1.2e+02     206     232 ..     260     298 ..     230     320 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.7e-09
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHH.CTTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacinddygtasvaddldrilda.lgddkltlvGhSmGGmialaya 91 
                    p+++++hG +++   +++  ++ + a++   +  v+++D rG+g S+  p+   +d  t +     +++ld+  + + + lvGhS+G+ + + +a
     CDO72045.1 120 PTILYFHGNAATRAAPRR--VQHYSAFSsrlRTNVLAIDYRGFGDSDGTPS---EDGLTEDAKTAWRWLLDQgAKPEDVMLVGHSLGTGVTSRLA 209
                    689***************..9999999999*********************...78888888888889976615666666********9988877 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.066
                    C............THHHHSEEEEEEETTCSSSCHHHHHH CS
  Abhydrolase_1 206 e............lknvlaptlvisgtsDplvppkaled 232
                    +            +k++++p ++ ++++D+ +p+++++ 
     CDO72045.1 260 KkllrhefdtlgvIKDINVPLFIAHSQNDMDIPHHHSRT 298
                    14444555555559****************999977654 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.9e-06    0.0033      13     100 ..     138     225 ..     136     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.9e-06
                   SGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSS....SEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEE CS
  Thioesterase  13 asvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpeg....PyalfGhSlGgllAfevArqLesqGlavkslfli 100
                   +++++ ++s+l+++   vla+ ++g++ d+   +s + l +   +a r+  ++g     + l+GhSlG  ++ ++A+ L ++G +++++ l 
    CDO72045.1 138 VQHYSAFSSRLRTN---VLAIDYRGFG-DSDGTPSEDGLTEDAKTAWRWLLDQGakpeDVMLVGHSLGTGVTSRLATFLAREGVKPRGVALL 225
                   578**********9...*********7.6666666666666666666665554433136899*************************99876 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.031     162     230 ..     140     206 ..     122     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
      DUF818 162 slkrlakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtlvqa 230
                  +  ++ +l++n+l  +Y G  +s G  + + l++  +   r+L D+  G k ++++  G+sLGt v +
  CDO72045.1 140 HYSAFSSRLRTNVLAIDYRGFGDSDGTPSEDGLTEDAKTAWRWLLDQ--GAKPEDVMLVGHSLGTGVTS 206
                 566788899************************************95..7777899999******9976 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.4e-05      0.06      61     157 ..     153     252 ..     151     356 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
                    EEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHH.HHHHHHH...CTT..--TTEEEEEEECE-S-TCCCCSECTTEEB CS
  Peptidase_S15  61 VvqdvrGtggSeGeftvgdsdeaedgadvidWlakqpwsnGkVgmtGiSYl.Gttqlla...aat..gvpalkaivpeaaisdlyddyyregGlvr 150
                    +  d rG+g+S+G      +  +ed++ + +Wl  q      V  +G S + G+t+ la   a +  ++++++ ++p  ++s++ +  y  gG+  
     CDO72045.1 153 LAIDYRGFGDSDGTPSE--DGLTEDAKTAWRWLLDQGAKPEDVMLVGHSLGtGVTSRLAtflAREgvKPRGVALLAPFTSLSSVLE-TYDIGGFPI 245
                    5679*********9887..9999**************************9734544333111444224667889999999999999.888888887 PP

                    CCHHHHH CS
  Peptidase_S15 151 apgglsw 157
                    ++ + ++
     CDO72045.1 246 LQPLQTF 252
                    7776666 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.5e-05      0.12      52      92 ..     188     230 ..     174     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.5e-05
                    C-STTEEEEEETCHHHHHHHHHHHTTSSSE..EEEEEET--SG CS
  Ser_hydrolase  52 aaeekvvlvAHSlgclavlhaaelqlakkv..agalLVapadv 92 
                    a +e+v+lv HSlg  ++ ++a+  +++ v  +g+ L ap+  
     CDO72045.1 188 AKPEDVMLVGHSLGTGVTSRLATFLAREGVkpRGVALLAPFTS 230
                    67899*****************9777766633699****9874 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.19      86     113 ..     186     214 ..     178     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
       PGAP1  86 sekeptsviliGHSmG.Givaraaltlkn 113
                 +  +p++v+l+GHS+G G+ +r+a++l++
  CDO72045.1 186 QGAKPEDVMLVGHSLGtGVTSRLATFLAR 214
                 56789***********8999999998865 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019      0.33      46     170 ..     174     304 ..     167     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
                   HHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH...H-GGG-SEEEEESE---CCCHHCSTTS.....THH.HCCCC--TTTCHHHHHHHHH CS
  Peptidase_S9  46 dDfiaaaealakegyvdserlaitGgSyGGyltgaaln...qrpdlFkaavaevpvvdvlrydsdtdl.....lte.eymewgnpeeneegykelsp 133
                   +D  +a+++l ++g  ++e +++ G+S G  +t  +++   +++ + ++++  +p++ + +   + d+     l++ ++  +g +  ++  ++e+ +
    CDO72045.1 174 EDAKTAWRWLLDQGA-KPEDVMLVGHSLGTGVTSRLATflaREGVKPRGVALLAPFTSLSSVLETYDIggfpiLQPlQTFAMGRKLLKKLLRHEFDT 269
                   788899999999995.699999******965554433323377788899999999999988888888888888888888899988778887888888 PP

                   H-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH CS
  Peptidase_S9 134 yspldnvkaypplLlihGlaDdrvppaealklvaaLq 170
                   +   +   +++pl++ h+++D  +p  ++ +l++ L 
    CDO72045.1 270 LGVIKD--INVPLFIAHSQNDMDIPHHHSRTLLDVLL 304
                   888888..************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2918.25
//
Query:       CDO72046.1  [L=1216]
Description: hypothetical protein BN946_scf184943.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-70  237.2   5.2    4.1e-32  111.7   3.5    3.2  3  HCO3_cotransp   HCO3- transporter family
    5.7e-30  104.2   0.0    7.5e-19   67.5   0.0    2.3  2  FMO-like        Flavin-binding monooxygenase-like
    2.9e-06   26.7   0.2      0.012   14.9   0.0    3.1  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    2.3e-05   23.8   0.0    0.00092   18.5   0.0    2.8  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00073   18.4   2.8     0.0011   17.8   0.7    2.0  2  Sulfate_transp  Sulfate permease family
    0.00098   19.3   0.5      0.015   15.5   0.0    2.7  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0036   17.3   3.0      0.011   15.7   0.0    3.3  4  NAD_binding_9   FAD-NAD(P)-binding
     0.0073   15.6   0.1       0.38   10.0   0.0    2.2  2  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   3.5   1.8e-35   4.1e-32       8     166 ..      48     207 ..      44     218 .. 0.91
   2 !   80.1   0.0   6.7e-26   1.5e-22     240     412 ..     232     405 ..     223     412 .. 0.89
   3 !   42.9   0.0   1.3e-14   2.8e-11     423     507 ..     491     577 ..     477     578 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 1.8e-35
  HCO3_cotransp   8 fgGLveDikrrlplYlsDftdalnlqclasvlFlYfaclspaitFGgLlgeategaigvseslvsaaisgilfalfagqpllilgstgPllvfeki 103
                     +G+++Dik r+p+YlsD+ d+ n +++ +++ ++fa+++p i+F+  l e t ++ gvse+l+s  ++ ++f++f++qpl+i g tgP+ v +k 
     CDO72046.1  48 GRGIIRDIKARTPYYLSDWADSWNYRVIPAIVLIFFANVLPGIAFSLDLIE-TTQQYGVSEVLLSSFMAAFIFSIFGAQPLCIAGVTGPITVLNKT 142
                    46*******************************************866655.55677*************************************** PP

  HCO3_cotransp 104 lykfckel..gldylslrvwiglwlalillilvatdasalvkyitrfteeifallIslifiyeal 166
                    ++++ +++    +yl++  w+ lw a++  i++a++ + ++ky+t f  ++f +++s +++   +
     CDO72046.1 143 IFDIIERQpdPPNYLQFVGWVYLWGAILHWITAALNWCNFLKYVTLFSCDTFGFYVSWVYLEYGV 207
                    ****988722579********************************************99986655 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 6.7e-26
  HCO3_cotransp 240 lvpdvallsliLflgtfllalfLkkfkksrflptkvRelisDfavliailvmvlvdvllg.vetpklevpeefkptse.krgwlinpleknpwwlv 333
                     + d a++ +iL+l   + ++ ++++ +s +++++vR++++D++++i++++ +++ ++      +  ++p++       +r wl+  + +++  +v
     CDO72046.1 232 STLDGAFVGIILALLMTVTSFLFRTLSQSGYFHRHVRRFLADYGMPISLVASSAMAYWGRfNAANPTTLPTGHAFLPAgDRPWLV-RFWELDGKWV 326
                    466889999************************************************99853445566666555554458*****.6778899999 PP

  HCO3_cotransp 334 laavlpallvtiLifmdqqitavivnrkenkLkKgsgyhlDLlvvavlilvlsllGlPwlvaatvlsitHvnslkvese 412
                     +a+  ++ + +L+f d+++++++ +     L+K  g+h D++++++++++ +llG+P   + +++++ H +sl v+ +
     CDO72046.1 327 GIAFPFGVALWVLFFFDHNVSSLMAQGSAFPLRKPPGFHYDFFLLGITTFIAGLLGIPAPNGLIPQAPIHTTSLLVMGH 405
                    99************************************************************************98865 PP

  == domain 3  score: 42.9 bits;  conditional E-value: 1.3e-14
  HCO3_cotransp 423 lgvrEqRvtgllvfiliglsvl..ltpvlklIPmpVLyGvFLYmgvtsLkgiqlfdRilLllmpakhqpdtiYlrkvplrkvhlFTl 507
                    + v EqRv++l+   l+ + +   + +vl+lIP  VL G+F Ymgv +L+g+ ++ +il ++ +    + ++ lr+v+  ++ lF +
     CDO72046.1 491 IAVVEQRVSNLAQGSLCLVLLTgpFLHVLNLIPRGVLAGLFWYMGVDALEGNGITRKILYFFRDRALTSAEEPLRRVRKSRILLFVA 577
                    6899*******987766555555599**********************************************************976 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   3.3e-22   7.5e-19       2     208 ..     710     944 ..     709     952 .. 0.81
   2 !   34.4   0.0   3.8e-12   8.6e-09     296     344 ..     961    1009 ..     957    1141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 3.3e-22
    FMO-like   2 kkvaviGaGvsGlasikccle......egleptcfersddiGGlw......r.fkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnskll 87 
                 k +a++GaG +Gla +k+ l+      +g e + +++  ++GGlw      r +   +e   + +y  + +n+    + +++f  p   p f  ++ ++
  CDO72046.1 710 KSIAIVGAGSAGLAILKTLLDfpldvrDGWEIVLYDQRRNVGGLWlpdppgRpLPSPPELPESPVYPLLHTNTPHPTMTYPNFTYPPLTPLFPSHEYVQ 808
                 89****************98744444478899*************4433332234556778999*********************************** PP

    FMO-like  88 eylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtek...e......gkkesavfdavmvctGhhvnphlpl.esfpG......iekfkGqyf 170
                  y   fa++ +ll y+++  +v++       +  Gqwe+  ++   +       k+ +  fd ++v  Gh  +ph+p+ +   G          k +++
  CDO72046.1 809 RYHYDFADHNGLLPYVRLFHKVAAASWV-GNADGGQWEIEVHElnaDdpreppAKTFKKTFDHLVVANGHNHYPHIPKwNGTEGwlantpAGTPKREIL 906
                 ******************9999987765.56899****9654312221222224777899*****************84333342111113456889** PP

    FMO-like 171 hsrdykepevfkgkrvlviGlGnsggdiavelsrtaeq 208
                 hs  y+ p+ ++++ v+++G G sg d a ++ + a+ 
  CDO72046.1 907 HSIYYRWPQKYTNRAVIIVGAGASGRDAALQVGKVARV 944
                 *******************************9998864 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 3.8e-12
    FMO-like  296 vkvkssvkeltetsaifedgtveedidvvifatGytfafpfleeslvkv 344 
                  v  k+++  +t+ts++fedg+v +d+d vi+ tGy f  pfl  +  +v
  CDO72046.1  961 VIPKPRIAYFTNTSVVFEDGSVLDDVDSVILGTGYEFRVPFLSSPHSSV 1009
                  55699*************************************8754443 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.13     3e+02       2      12 ..     714     724 ..     713     735 .. 0.82
   2 !   14.9   0.0   5.2e-06     0.012     149     185 ..     904     940 ..     865     966 .. 0.72
   3 !    7.3   0.0    0.0011       2.4     245     301 ..     973    1030 ..     960    1033 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
  Pyr_redox_3   2 IiGaGPaGlaa 12 
                  I+GaG aGla+
   CDO72046.1 714 IVGAGSAGLAI 724
                  9********97 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 5.2e-06
  Pyr_redox_3 149 lvkhyskvkefhkyagqkvvViGgknSavDaAlelvr 185
                     h+ +++ ++ky+++ v+++G++ S+ DaAl++ +
   CDO72046.1 904 EILHSIYYRWPQKYTNRAVIIVGAGASGRDAALQVGK 940
                  3459999999***********************9765 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0011
  Pyr_redox_3  245 ykvktedgkkvevkddvvlatGykpdlsflkk.slfeldedgrpvlteeteetnvpgl 301 
                     v +edg+ ++  d v+l tGy+  + fl++ +   l+ d    +++ t  t v++l
   CDO72046.1  973 TSVVFEDGSVLDDVDSVILGTGYEFRVPFLSSpHSSVLEVDPDTSYNSTTAPTLVSNL 1030
                   4678999*999999*****************976666677889999999999999987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.1e-07   0.00092       2     164 ..     711     941 ..     710    1023 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.1e-07
                  SEEEE--SHHHHHHHHHHHH......HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.................................... CS
                  xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq......agakvtlvelegtclnggcllskallgvaedaeias.................................... 57 
                  +++++G+G AGla  +tl         g +++l+ +++  ++g  l+ +  +  ++++e  +                                    
   CDO72046.1 711 SIAIVGAGSAGLAILKTLLDfpldvrDGWEIVLY-DQRRNVGGLWLPDPPGRPLPSPPELPEspvypllhtntphptmtypnftyppltplfpsheyv 807
                  79******************9999888*******.6665666666666655555555554446778888888888999999************99777 PP

                  ..............HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEEEC.......TCEEEEEESEEEE---EEE-BCTCT...TC.......TTBE CS
                  ..............xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx...xx......xxxxx RF
  Pyr_redox_2  58 ..............evvkklnqgielllgee.vvkidpgkkkvklekkke.......gdeekiaydklvlAtGssprdlgip...Gv......aenvg 124
                                     +   ++++++++ v + d g+ ++++ +++         +++k ++d+lv+A G +++ ++ip   G        + ++
   CDO72046.1 808 qryhydfadhngllP----YVRLFHKVAAASwVGNADGGQWEIEVHELNAddpreppAKTFKKTFDHLVVANG-HNHYPHIPkwnGTegwlanTPAGT 900
                  777777766644331....23333333334546666666666666555557788899999*************.777777774435555566422222 PP

                  ECCSECHH.HHHHCCSS-TSEEEEES-SHHHHHHHHHHHHH CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 125 klvrtlds.aealklkllpkrivvvGgGyiGvElAaalakl 164
                     ++l+s   ++ +k +++ +++vG+G+ G + A +  k+
   CDO72046.1 901 PKREILHSiYYRWPQKYTNRAVIIVGAGASGRDAALQVGKV 941
                  2222233313444455555999**********999986555 PP

>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.7     5e-07    0.0011       5      72 ..      75     147 ..      73     190 .. 0.86
   2 ?   -0.5   0.1      0.18   3.9e+02     317     358 ..     498     540 ..     493     549 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5e-07
  Sulfate_transp   5 liaGitvallaiPqalayal.laglppiygL....yssvvpqlvyalfGtsrqlavGpvavlslivgeiiakv 72 
                     ++a +++++ +++ ++a++l l +   +yg+     ss+++++++++fG  +  + G ++ ++++  +i++ +
      CDO72046.1  75 IPAIVLIFFANVLPGIAFSLdLIETTQQYGVsevlLSSFMAAFIFSIFGAQPLCIAGVTGPITVLNKTIFDII 147
                     678899999*********************88888*********************************99977 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.18
  Sulfate_transp 317 lsglvsalvvllvl.lvltplleyiPkavLaaiiivagkglLv 358
                     +s+l  + + l++l   +  +l+ iP+ vLa++  ++g+++L+
      CDO72046.1 498 VSNLAQGSLCLVLLtGPFLHVLNLIPRGVLAGLFWYMGVDALE 540
                     555555544433330456778999************9999886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.9e-06     0.015       1      34 [.     714     753 ..     714     760 .. 0.87
   2 ?    0.6   0.4      0.31   6.9e+02       1       8 [.     924     931 ..     924     941 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.9e-06
                    EE--SHHHHHHHHHHH......CCTEEEEEE-SSSSSSGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLa......kagfdvlllekrdrlGGr 34 
                    IvGaG +Gl++  +L       ++g +++l+++r+ +GG 
     CDO72046.1 714 IVGAGSAGLAILKTLLdfpldvRDGWEIVLYDQRRNVGGL 753
                    9*************9845555457**************96 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.31
                    EE--SHHH CS
  NAD_binding_8   1 IvGaGlsG 8  
                    IvGaG+sG
     CDO72046.1 924 IVGAGASG 931
                    9******9 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.9e-06     0.011       1      45 [.     713     757 ..     713     763 .. 0.91
   2 ?   -2.3   0.3       1.7   3.8e+03       2      13 ..     924     935 ..     923     941 .. 0.81
   3 ?   -1.6   0.0       1.1   2.4e+03     135     155 ..     974     995 ..     970     996 .. 0.85
   4 ?   -1.5   0.0      0.98   2.2e+03      12      48 ..    1090    1123 ..    1085    1163 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.9e-06
  NAD_binding_9   1 aivGaGprGlavlerLlara.kkkspleitlfdpsepgagrvwrtd 45 
                    aivGaG +Gla+l+ Ll+   + ++  ei l+d++    g+ w +d
     CDO72046.1 713 AIVGAGSAGLAILKTLLDFPlDVRDGWEIVLYDQRRNV-GGLWLPD 757
                    8*******************9999**********8887.7899877 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
  NAD_binding_9   2 ivGaGprGlavl 13 
                    ivGaG++G  ++
     CDO72046.1 924 IVGAGASGRDAA 935
                    9******96655 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.1
  NAD_binding_9 135 avlladgasl.aadaVvLAlGh 155
                     v+ +dg+ l ++d+V+L +G 
     CDO72046.1 974 SVVFEDGSVLdDVDSVILGTGY 995
                    578899999989********96 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.98
  NAD_binding_9   12 vlerLlarakkkspleitlfdpsepgagrvwrtdqse 48  
                     +l++L+ar   ++ l+   fdp++ g + v++++ ++
     CDO72046.1 1090 MLDELVAR---EAALRAEGFDPYKVGHRLVASSETDH 1123
                     66777777...57788888899988888888877543 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.019        41      19      36 ..     711     728 ..     707     755 .. 0.71
   2 !   10.0   0.0   0.00017      0.38       9      39 ..     911     941 ..     902     948 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.019
                 EEEEE--SHHHHHHHHHH CS
        Thi4  19 DvvivGaGssGLtaayyl 36 
                  ++ivGaGs+GL+  ++l
  CDO72046.1 711 SIAIVGAGSAGLAILKTL 728
                 589*********987665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00017
                 HHHHHHHTEEEEEEE--SHHHHHHHHHHHHC CS
        Thi4   9 fedllkyaesDvvivGaGssGLtaayylakk 39 
                 ++  +ky +  v+ivGaG+sG  aa  ++k 
  CDO72046.1 911 YRWPQKYTNRAVIIVGAGASGRDAALQVGKV 941
                 333479*******************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 8604.77
//
Query:       CDO72047.1  [L=406]
Description: hypothetical protein BN946_scf184943.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-33  114.2   2.2    1.3e-32  112.4   0.1    2.2  2  EHN            Epoxide hydrolase N terminus
    1.9e-13   50.6   0.1    3.3e-13   49.9   0.1    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    9.2e-05   23.1   5.0    0.00024   21.8   5.0    1.8  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
        0.2   11.2   0.6       0.59    9.7   0.1    1.9  2  NTP_transf_5   Uncharacterised nucleotidyltransferase


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.1   2.8e-36   1.3e-32       2     108 .]       7     116 ..       6     116 .. 0.93
   2 ?    1.3   0.2     0.095   4.3e+02      43      62 ..     274     293 ..     224     303 .. 0.75

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 2.8e-36
         EHN   2 rpfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearlnsfpqfkteid.....gldihFihlrsakpdaiPl 95 
                 rpf++svp+ ++d l+k+l+ltr+pe+ +++   w++G++++ +++l+++W++++dWr++e ++n++p f+ +id     +l+ih++h++s+ ++aiPl
  CDO72047.1   7 RPFTLSVPDCDIDLLHKKLDLTRFPEDLENA--GWDYGAPLSDVQKLVEHWRTKFDWRKAEVEINKLPMFTRDIDveshgTLNIHYVHQKSKVQNAIPL 103
                 79***********************766555..6*9**************************************7555545**********99****** PP

         EHN  96 lllhGWPgsflef 108
                 l++hGWPg+fle+
  CDO72047.1 104 LFVHGWPGNFLEV 116
                 ***********96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.095
         EHN  43 delkelldyWkeeydWraee 62 
                 +++ e l  W++ey W ++e
  CDO72047.1 274 AWIYEKLVSWTDEYPWTDNE 293
                 677777789*******9876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1   7.3e-17   3.3e-13       2     112 ..     102     214 ..     101     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 7.3e-17
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.....TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.....gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaa 92 
                    +l+++hG+pg++   ++  + p L ++      f+v++l l+G+g+S++++      +    +a++l++++ +lg ++ ++ G+++G  +++++  
     CDO72047.1 102 PLLFVHGWPGNFLEVRK--ILPLLTQNsadhpSFHVVALSLPGFGFSEAPKK---AAFAGRQYAEVLNKLMLSLGYEEYVYQGGDWGHVLGAHAVT 192
                    89***************..******99************************9...8999999********************************** PP

                    HH.GGGEEEEEEESE.CSSCCH CS
  Abhydrolase_1  93 ey.perVkalvllga.idpaas 112
                     y ++++ka  +  + + p+  
     CDO72047.1 193 HYgNKHIKAWHTNMPlCRPPTL 214
                    ********99998887555444 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   5.0   5.2e-08   0.00024       1      97 [.     103     207 ..     103     384 .. 0.42

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.2e-08
                    EEEE--GC.....G....C.HHHHHHHHCCT......CEEEEE--TTSTS-GGCS.--HHHCHHHHHHHCCTT.............TTSEEEEEET CS
  Abhydrolase_6   1 vlllHGagssassW....l.vapLaallaag......vhvlapDlpGhGrsdppp.ldledladlaalldelaa...........gggpvvlvGHS 73 
                    +l++HG       W    l v+ +++ll++       +hv+a++lpG+G+s+ p   +++  +++a++l++l             g+     +GH 
     CDO72047.1 103 LLFVHG-------WpgnfLeVRKILPLLTQNsadhpsFHVVALSLPGFGFSEAPKkAAFAG-RQYAEVLNKLMLslgyeeyvyqgGD-----WGHV 185
                    79****.......8665447888888888888888999***********886666266655.999*******877866666654333.....7777 PP

                    CHHHHHHHHHHCC...EEEEES-.. CS
  Abhydrolase_6  74 lGGalalaaapla.lvvgvlldppp 97 
                    lG++ +++   +   +++     +p
     CDO72047.1 186 LGAHAVTH---YGnKHIKAWHTNMP 207
                    77777777...55633333333322 PP

>> NTP_transf_5  Uncharacterised nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00013      0.59      95     142 ..      16      68 ..      14     102 .. 0.70
   2 ?   -1.2   0.0      0.28   1.3e+03     106     125 ..     160     181 ..     155     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
  NTP_transf_5  95 gDiDllvkredldraeelLeelGyelesd.......gsekhevyyrekkgveiel 142
                   +DiDll k+ dl r  e Le++G+  + +        +++   + +  +++e+e+
    CDO72047.1  16 CDIDLLHKKLDLTRFPEDLENAGWDYGAPlsdvqklVEHWRTKFDW--RKAEVEI 68 
                   7***********************9888766666653333334445..4444443 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.28
  NTP_transf_5 106 ldraeelLeelGyelesd..gs 125
                   ++  ++l+++lGye   +  g+
    CDO72047.1 160 AEVLNKLMLSLGYEEYVYqgGD 181
                   6678899******977663422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2902.33
//
Query:       CDO72048.1  [L=425]
Description: hypothetical protein BN946_scf184943.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-33  113.6   1.1    1.9e-32  111.8   0.3    2.1  2  EHN            Epoxide hydrolase N terminus
    6.9e-13   48.8   0.1    1.2e-12   48.0   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0029   18.2   2.0     0.0029   18.2   2.0    2.3  2  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.3   3.2e-36   1.9e-32       3     108 .]       8     116 ..       6     116 .. 0.93
   2 ?   -0.3   0.0      0.23   1.4e+03      43      62 ..     274     293 ..     251     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 3.2e-36
         EHN   3 pfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearlnsfpqfkteid..g...ldihFihlrsakpdaiPll 96 
                 pfk+svp++++d l+k+l+ltr+p+e +++  +w++G++++ +++l ++Wk+++dWr++ea++n++p f+ +i+  g   l+ih++h++s+ ++aiPll
  CDO72048.1   8 PFKLSVPDSDIDLLHKKLDLTRFPDELENA--AWNYGAPLSDIQRLFEHWKTKFDWRRAEAEINKLPMFTRDIEveGhgtLNIHYVHQKSEVQHAIPLL 104
                 8***********************987666..5*9*************************************95442456**********99******* PP

         EHN  97 llhGWPgsflef 108
                 ++hGWPg fle+
  CDO72048.1 105 FVHGWPGDFLEV 116
                 **********96 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
         EHN  43 delkelldyWkeeydWraee 62 
                 +++ e l  W++ y W + e
  CDO72048.1 274 AWIYEKLVSWTDAYPWTDDE 293
                 567777789*******9887 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1     2e-16   1.2e-12       2     106 ..     102     207 ..     101     226 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 2e-16
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.....TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.....gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaa 92 
                    +l+++hG+pg +   ++  + p L k+      f+v++l l+G+g+S++++    + +    +a+++++++ +lg ++ ++ G+++G +++l++  
     CDO72048.1 102 PLLFVHGWPGDFLEVRK--ILPFLTKKstdypSFHVVALSLPGFGFSEAPKK---PGFAGRQYAEVFNKLMLSLGYEEYVYQGGDWGHLLGLHAVT 192
                    89***************..********************************9...8999999********************************** PP

                    HH.GGGEEEEEEESE CS
  Abhydrolase_1  93 ey.perVkalvllga 106
                     y  +++ka  +  a
     CDO72048.1 193 HYgHQHIKAWHTNMA 207
                    ***999*99887777 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.6   9.8e+03     140     168 ..      37      63 ..      12      77 .. 0.55
   2 !   18.2   2.0   4.9e-07    0.0029       1      60 [.     103     166 ..     103     401 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                    CCCCHCHCCCGHHHHCCHHCHTTCCHHTT CS
  Abhydrolase_6 140 adaawrarlarlaallaglgllpaaawad 168
                    a   ++a+l++ ++l+ ++ +    +w++
     CDO72048.1  37 AAWNYGAPLSDIQRLFEHWKTKF--DWRR 63 
                    23444444455555555444433..4443 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 4.9e-07
                    EEEE--GC.....G....C.HHHHHHHHCCT......CEEEEE--TTSTS-GGCS.--HHHCHHHHHHHCCT CS
  Abhydrolase_6   1 vlllHGagssassW....l.vapLaallaag......vhvlapDlpGhGrsdppp.ldledladlaalldel 60 
                    +l++HG       W    l v+ ++++l++       +hv+a++lpG+G+s+ p   +++  +++a++ ++l
     CDO72048.1 103 LLFVHG-------WpgdfLeVRKILPFLTKKstdypsFHVVALSLPGFGFSEAPKkPGFAG-RQYAEVFNKL 166
                    79****.......7655347887777777777778999***********664443355555.5555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2934.70
//
Query:       CDO72049.1  [L=1255]
Description: hypothetical protein BN946_scf184943.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-31  107.3   0.1    4.7e-31  107.3   0.1    2.8  3  EHN            Epoxide hydrolase N terminus
      5e-05   23.1   0.1    9.4e-05   22.2   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0038   17.8   4.0      0.018   15.7   4.0    2.4  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
        1.9    6.3   5.3        3.6    5.4   5.3    1.4  1  V_ATPase_I     V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.1   1.1e-34   4.7e-31       3     108 .]       9     117 ..       7     117 .. 0.92
   2 ?   -3.3   0.3       2.6   1.1e+04      69     101 ..     177     209 ..     171     214 .. 0.68
   3 ?   -1.8   0.1      0.87   3.9e+03      43      62 ..     258     277 ..     240     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 1.1e-34
         EHN   3 pfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearlnsfpqfkteid..g...ldihFihlrsakpdaiPll 96 
                 pf +svp+++++ l+k+l+l r+p+e +++   w++G++++ +++l+++W++++dWr++ea++n++p f+ +i+  g   l+ih++h++s+ ++aiPll
  CDO72049.1   9 PFILSVPDSDIELLHKKLDLVRFPDELENA--GWNYGAPLSDIQRLVEHWRTKFDWRKAEAEINKLPMFTRDIEveGhgtLNIHYVHQKSKVQSAIPLL 105
                 8999********************987776..5*9*************************************95442456**********99******* PP

         EHN  97 llhGWPgsflef 108
                 ++hGWPg fle+
  CDO72049.1 106 FVHGWPGDFLEV 117
                 **********96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
         EHN  69 pqfkteidgldihFihlrsakpdaiPllllhGW 101
                 + ++t++  l  hF+ +r  +  + Pl+++   
  CDO72049.1 177 KAWHTNMPMLVPHFVLFRRPSIFSNPLVFMGTL 209
                 556667766778999999533335799998655 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.87
         EHN  43 delkelldyWkeeydWraee 62 
                 +++ e l  W+++y W + e
  CDO72049.1 258 AWIYEKLVSWTDKYPWTDDE 277
                 567777789*******9876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.1e-08   9.4e-05       2      54 ..     103     155 ..     102     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.....TSEEEEEEETTSTTSSSTTTGB.CHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.....gfdvillDlrGvgySspapacinddy 54 
                    +l+++hG+pg +   ++  + p L ++      f+v++l l+G+g+S+++     + +
     CDO72049.1 103 PLLFVHGWPGDFLEVRK--ILPLLTQSsahhpSFHVVALSLPGFGFSDAPRK---PGF 155
                    89***************..******99**********************998...344 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   4.0     4e-06     0.018       1      47 [.     104     155 ..     104     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4e-06
                    EEEE--GC.....G....C.HHHHHHHHCCT......CEEEEE--TTSTS-GGCS.--H CS
  Abhydrolase_6   1 vlllHGagssassW....l.vapLaallaag......vhvlapDlpGhGrsdppp.ldl 47 
                    +l++HG       W    l v+ +++ll++       +hv+a++lpG+G+sd p   ++
     CDO72049.1 104 LLFVHG-------WpgdfLeVRKILPLLTQSsahhpsFHVVALSLPGFGFSDAPRkPGF 155
                    79****.......7655346676655555555556999***********6655443333 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.3    0.0008       3.6      60     166 ..     538     643 ..     515     654 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0008
  V_ATPase_I  60 eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlek.akefleeeeeeeeeeeseeeeeekeeeeeeeseeeeeeelleeeee 157
                 e+++e+++e+   + ++ ++ + ++++e+++ +++l +e+ ++ e+++v +  ++++++++ e+e+e+e+e+e+e+++ee+++es++eee+e+l+ +  
  CDO72049.1 538 ESESEKENESGGTRRSRAVRLAMRKVREVERMARQLDAEMMRVDEEQEVTRVgCADMVSDD-EDEDEDEDEDEDEDEDEEDDDESDDEEESEMLDVHA- 634
                 555566666666677788888999*************************986266666655.334444444444445555556666666666665444. PP

  V_ATPase_I 158 lsfvaGvik 166
                    vaG++ 
  CDO72049.1 635 SVSVAGAVC 643
                 445777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.47u 0.36s 00:00:01.83 Elapsed: 00:00:00.56
# Mc/sec: 6741.14
//
Query:       CDO72050.1  [L=202]
Description: hypothetical protein BN946_scf184943.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1392.36
//
Query:       CDO72051.1  [L=446]
Description: hypothetical protein BN946_scf184943.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00049   20.3   0.0     0.0014   18.9   0.0    1.7  1  stn_TNFRSF12A   Tumour necrosis factor receptor stn_TNFRSF12A
  ------ inclusion threshold ------
      0.041   14.4   0.2      0.041   14.4   0.2    1.9  2  CEND1           Cell cycle exit and neuronal differentiation 
      0.067   13.9   1.7       0.38   11.4   1.7    2.3  1  RCR             Chitin synthesis regulation, resistance to Co
      0.087   13.0   0.4       0.19   12.0   0.4    1.5  1  TrbC            TrbC/VIRB2 family
       0.18   11.6   0.0       0.44   10.3   0.0    1.6  2  Acetyltransf_2  N-acetyltransferase


Domain annotation for each model (and alignments):
>> stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.9e-07    0.0014      53     108 ..     225     282 ..     188     289 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.9e-07
  stn_TNFRSF12A  53 aslpaekrsdlllklaaappasfrllwpilGGalslalvlglls..Gflvwrrcrrre 108
                     + p+ ++s ++++ ++a  +s   l pilGGa+    v ++l+  Gf+++rr rrr+
     CDO72051.1 225 LMSPSLSSSPAQASGSTAVATSSTHLAPILGGAIGGVAVAAILAliGFFLFRRQRRRQ 282
                    34445555666666778888888999*******87555555433229999*****996 PP

>> CEND1  Cell cycle exit and neuronal differentiation protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.1e-05     0.041      58     145 ..     191     277 ..     184     279 .. 0.75
   2 ?   -3.1   0.3       2.9     1e+04      11      21 ..     373     383 ..     359     404 .. 0.46

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
       CEND1  58 kktpakadpallnnhsnlkPapaaaeapsspdatp.epkgpgdgaeedeaasPgGrGpsifenlkPLl..vaGGvavaalalilGvafLar 145
                 k   a+++ ++    s lk ++ ++ a+ssp  +   p   +  a+ +++++     +++   l P+l   +GGvavaa+  ++G  ++ r
  CDO72051.1 191 KDFAATNNNTFTHCNSTLKASSISSIASSSPTSSLmSPSLSSSPAQASGSTA----VATSSTHLAPILggAIGGVAVAAILALIGFFLFRR 277
                 5677888899999999******999999999988645555555555553333....3567789****97779********99999866555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
       CEND1  11 pkadakataea 21 
                   a ++a + +
  CDO72051.1 373 SSASSQAVSTG 383
                 22222222222 PP

>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.7   0.00011      0.38       7     107 ..     260     375 ..     257     439 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
         RCR   7 iiivlillvllltlrvakrRrrrGlqplygtgWlvsa............pppPsYgqsqqqynqa.esltsatvptytpnaneedaGyydqeGkfhe.. 90 
                  ++v+++l l+++++  ++Rrr+G +p+      +++             +p s   + q+ + + ++l ++  p  +   +  d+Gy +  Gk ++  
  CDO72051.1 260 GVAVAAILALIGFFLFRRQRRRQGPKPIDLSKEYSDRstlnsdqqpmsvVTPFS--VAGQSSTSPvHTLRAQDFPRLNDA-PVADSGYGG--GKLTMse 353
                 5778899999999***************86555544234566665655322222..222222233233445555666655.569999988..7776677 PP

         RCR  91 .....lqqPqqayqreesaees 107
                         P+ a+++++s+++ 
  CDO72051.1 354 eyallPRSPHGARTHKRSQSSA 375
                 8888766666666665555443 PP

>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   5.3e-05      0.19      13      71 ..     220     276 ..     208     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
        TrbC  13 lalalalvllllaspalAqaaggdpvetvlqnivdfltgplakviatiaiivaGimlaf 71 
                   + +++   l++spa A+++  + v t  + +   l g ++ v++  +++ +G+ l+ 
  CDO72051.1 220 SPTSSLMSPSLSSSPAQASGS--TAVATSSTHLAPILGGAIGGVAVAAILALIGFFLFR 276
                 5677899999********988..9***************66666666666677776654 PP

>> Acetyltransf_2  N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012      0.44     129     207 ..     148     236 ..     117     256 .. 0.74
   2 ?   -3.1   0.0       1.5   5.3e+03     102     112 ..     340     352 ..     339     370 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
                     EEEEEEETTCEEEEEEEETTEEE.........EEEEEEEEEB-HHHHHHHHHHHHHSTT-HHHCS-EEEEEETTEEEEEETTEEEEE..E CS
  Acetyltransf_2 129 ifrlveeeenewvlekkkreewv.........klYsftleprqiedfeeandylstspdsvftkkllcslatpdgrltLvgrtlter..e 207
                      + l ++ +  w++ ++ r + +         + + + ++   i+df ++n ++ t+ +s++  +++ s a ++    L+  +l+++  +
      CDO72051.1 148 LYSLFWDTG-AWYVTTRLRARENltihdvpviTRFYVYTKETMIKDFAATNNNTFTHCNSTLKASSISSIASSSPTSSLMSPSLSSSpaQ 236
                     566666666.666666555555556777777755556677889*******************************9999999999998332 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
                     E-SSSSCG...-S CS
  Acetyltransf_2 102 vDvGFGgs..tlt 112
                     +D+G+Gg   t+ 
      CDO72051.1 340 ADSGYGGGklTMS 352
                     89***99844444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3209.24
//
Query:       CDO72052.1  [L=309]
Description: hypothetical protein BN946_scf184943.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2183.09
//
Query:       CDO72053.1  [L=975]
Description: hypothetical protein BN946_scf184943.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1442  (0.0804284); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.00u 0.38s 00:00:02.38 Elapsed: 00:00:00.68
# Mc/sec: 4304.94
//
Query:       CDO72054.1  [L=265]
Description: hypothetical protein BN946_scf184943.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-17   63.9   0.0    1.6e-17   63.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.4e-13   50.2   0.0    3.3e-13   49.7   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.3e-10   39.5   0.0    4.6e-10   39.0   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      7e-07   28.6   0.0    1.1e-06   28.0   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    2.8e-06   26.7   0.0     0.0041   16.3   0.0    2.5  2  NAD_binding_4    Male sterility protein
    0.00051   20.0   0.1     0.0011   19.0   0.0    1.5  2  NAD_binding_10   NAD(P)H-binding
    0.00067   19.2   0.0     0.0012   18.4   0.0    1.4  1  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.017   14.3   0.0        1.2    8.2   0.0    2.6  3  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.063   12.8   0.0      0.098   12.2   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
       0.19   11.3   0.0       0.27   10.8   0.0    1.2  1  Enterotoxin_a    Heat-labile enterotoxin alpha chain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0     9e-21   1.6e-17       1     173 [.       6     184 ..       6     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 9e-21
                 EEEETTTSHHHHHHHHHHHHCT.....SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHHHSHHHH.HHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.....yevigldrlssasntarledlelveldltdrsalerlfkee..qpdavihlAavggvaassedpadf.iekn 91 
                 +l+tGa Gf+G +l++al++ +     +++i +d  + + +++   ++  +++dltd+++ + lf+++   pd+v+ l   g  ++ sed+ df ++ n
  CDO72054.1   6 VLITGAGGFLGGQLARALASDThtapaVRLILVDVVEPKAPQNV--EAVTIKADLTDPTQADGLFDTKfgVPDTVYCL--HGIMSRGSEDNFDFgVKVN 100
                 79********************6665555566666644444443..3489****************99888*******..778888888888884469* PP

                 THHHHHHHHHHHHHTCT.....EEEEEEEGGGGTSCSSSS.BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE CS
   Epimerase  92 lqgtlnlleaarkagvk.....rllflsSsevYGkdaeqp.keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnly 173
                 +  ++++l+aar ag +     +++f sS +vYG + + p  +++t    +  p+s+Y++aKl  e  + +y++ + ++  ilrl +++
  CDO72054.1 101 IDSVRTVLDAARHAGQRsgtviKFIFTSSLAVYGGPLP-PvATQDT----IaTPQSAYGMAKLVDEIFINEYTRRGFVDGRILRLPTIV 184
                 ************9988888889************8888.7555555....459***********************9999999998876 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.9e-16   3.3e-13       1     169 [.       7     169 ..       7     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.9e-16
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev..qpdevynLAAqshVdvsfek 94 
                    LiTG  Gf G  la+ L +  ++   + r+     ++ +e  a  p    + +   +k+DltD ++ + l++     pd+vy L +    + s ++
     CDO72054.1   7 LITGAGGFLGGQLARALASDTHTAPAV-RL---ILVDVVEPKA--P---QNVEAVTIKADLTDPTQADGLFDTKfgVPDTVYCLHGIMS-RGSEDN 92 
                    9******************98877554.33...3334444432..2...23456789**************998778*******99765.567777 PP

                    HHHHHHHHTHHHHHHHHHHHHCT....TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalgle..kkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyre 169
                     +  ++vn+  + ++L+a+r++g +  + ++f+++S+  vYG +     t +t  +P+s Y++aKl+ + ++ +y +
     CDO72054.1  93 FDFGVKVNIDSVRTVLDAARHAGQRsgTVIKFIFTSSLAVYGGPLPPVATQDTIATPQSAYGMAKLVDEIFINEYTR 169
                    78889*****************97733469***************999*************************9986 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.6e-13   4.6e-10       1     178 [.       7     187 ..       7     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.6e-13
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee.lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegv....dvvihlaslvdvagkltedeimkvnvk 94 
                 ++tG++GFlG +l ++L +  + +  vr + ++  +++    ++v+   +i++D+td  + +   +      d v  l++++   +++++d   kvn+ 
  CDO72054.1   7 LITGAGGFLGGQLARALASDTHtAPAVRLILVDVVEPK--APQNVEAV-TIKADLTDPTQADGLFDTKfgvpDTVYCLHGIMSRGSEDNFDFGVKVNID 102
                 69***************99887799***9877666666..45666666.7889999998887776643222478888999999999************* PP

   3Beta_HSD  95 GTrnvleacvkag.....vrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlkngg..rlyTcaLRp 178
                   r+vl+a+++ag     v ++++tSs+ v g+     ++     ++    ++q+ay   K + E ++ +   r + +g   rl T+ +Rp
  CDO72054.1 103 SVRTVLDAARHAGqrsgtVIKFIFTSSLAVYGG--PLPPVA----TQDTIATPQSAYGMAKLVDEIFINEYTRRGFVDGRilRLPTIVVRP 187
                 *********999755556889**********99..555666....6667788999999999999999999999999999888999999998 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.1e-10   1.1e-06       3     142 ..       6     170 ..       4     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.1e-10
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH..--SEEEE------HHHHHHSHHHHHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkea..kpdvvvnaAAytavDkaEseeeaayav 77 
                    +l+tGa+G lG +La++la++ + + a+ r                    ++dltd+++++ l++ +   pd v+ +         E++ +   +v
     CDO72054.1   6 VLITGAGGFLGGQLARALASDTHTAPAV-RLilvdvvepkapqnveavtiKADLTDPTQADGLFDTKfgVPDTVYCLHG-IMSRGSEDNFDFGVKV 99 
                    79*****************887444444.447999*****************************875335888876555.456789********** PP

                    HTHHHHHHHHHHHHCT......-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SS CS
  RmlD_sub_bind  78 naeavealAeaaaavg......alLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkk 142
                    n ++v+++ +aa+++g      +++i+ S+  V+ G  +   ++d    P+++YG +Kl  E  ++++  +
     CDO72054.1 100 NIDSVRTVLDAARHAGqrsgtvIKFIFTSSLAVYGGPLPPVATQDTIATPQSAYGMAKLVDEIFINEYTRR 170
                    ********99999988555555689************9999999999***************999997765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0009       1.6       1      23 [.       8      30 ..       8      65 .. 0.78
   2 !   16.3   0.0   2.3e-06    0.0041     108     233 ..      97     210 ..      89     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0009
                   EE-TTSHHHHHHHHHHHHHS-.T CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev 23
                   +TGa GFLG  L + L ++t   
     CDO72054.1  8 ITGAGGFLGGQLARALASDTHTA 30
                   8*************999776544 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.3e-06
                    HHHHHHHHHHHHHHHTSSS--.....-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EE CS
  NAD_binding_4 108 lrvNveGtrevlelakklkkl....kvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvrearrrsglpvv 199
                    ++vN++++r vl+ a+   +       +++ S+ +v+g     v                 ++++ +  + +Y   K + E  ++e+ rr+ +   
     CDO72054.1  97 VKVNIDSVRTVLDAARHAGQRsgtvIKFIFTSSLAVYGGPLPPV----------------ATQDTIATPQSAYGMAKLVDEIFINEYTRRGFVDGR 176
                    78999999999999995444444446788888844444444354................67888899999*******************999*** PP

                    EEEE-EEE--SSST---TTSHHHHHHHHHHHH-E CS
  NAD_binding_4 200 ivRpsiitgesktGwingsdlgirgllgliakgv 233
                    i+R+++i+ ++   ++  s+++ ++  ++ a  v
     CDO72054.1 177 ILRLPTIVVRPGAPSAAASSFVSALEAVAGADAV 210
                    ********98877666666644444444444444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.9e-07    0.0011       1     114 [.      10     142 ..      10     189 .. 0.69
   2 ?   -2.7   0.0       2.5   4.5e+03      55      64 ..     201     210 ..     192     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.9e-07
                     TTTSHHHHHHHHHHHHC-T-E...EEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT...T-.SEEEES-.....--TCCHHHH...... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghe...vtalvRnpeklaeleaeeglevvegdvtdvedlaealk...ga.daVvsal.....ggggkdeeg...... 77 
                     GA G  G +l++ l++++ h+   v+++  +  + +  +++ ++ ++++d+td+ +    ++   g+ d+V++ +     g++++          
      CDO72054.1  10 GAGGFLGGQLARALASDT-HTapaVRLILVDVVEPK-APQNVEAVTIKADLTDPTQADGLFDtkfGVpDTVYCLHgimsrGSEDN---Fdfgvkv 99 
                     9****************6.66122444444433322.34566677788******9999999855544699999995543322222...2455666 PP

                     ....HHHHHHHHHHCT.....--EEEEEEETTTTSGCGCHHHHHHH CS
  NAD_binding_10  78 ....aknivdaakeag.....vkRfvlvsaigvgdevpgefgewnk 114
                         +++++daa+ ag     v +f++ s++ v+    g+++++++
      CDO72054.1 100 nidsVRTVLDAARHAGqrsgtVIKFIFTSSLAVYG---GPLPPVAT 142
                     7788********98764444577999999999995...55555544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
                     HHHHTT-SEE CS
  NAD_binding_10  55 aealkgadaV 64 
                      ea++gadaV
      CDO72054.1 201 LEAVAGADAV 210
                     5899999999 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.6e-07    0.0012       1     133 [.       4     123 ..       4     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.6e-07
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 +vvl+tGa++ +G ++a++la++  +  +v     ++ e ++     + +a++i++D+td ++++ l+++    +g  d ++   Gi     +s+ se+
  CDO72054.1   4 NVVLITGAGGFLGGQLARALASDTHTAPAVRLILVDVVEPKAPQ---NVEAVTIKADLTDPTQADGLFDTK---FGVPDTVYCLHGI-----MSRGSED 91 
                 69*********************999988888877774444443...467*****************9986...6777777777789.....7888999 PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEE CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvn 133
                 +++  ++vN+ +v  +  a+  a   q+sG+++ 
  CDO72054.1  92 NFDFGVKVNIDSVRTVLDAARHA--GQRSGTVIK 123
                 99999999999988877775555..888888864 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00066       1.2       1      35 [.       6      44 ..       6      69 .. 0.78
   2 ?   -0.6   0.0      0.32   5.8e+02      94     119 ..      90     115 ..      87     134 .. 0.79
   3 ?    2.6   0.0     0.035        63     129     156 ..     144     171 ..     137     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00066
                     EEEETTTSHHHHHHHHHHHHH....B-SEEEEEES-HHH CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk....kpkkiillerdElk 35
                     vl+tGagG +G +l r +++      + ++il++  E k
       CDO72054.1  6 VLITGAGGFLGGQLARALASDthtaPAVRLILVDVVEPK 44
                     89*************999876433234567777777765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                      HHSHHHHHHHHHHHHHHHHHHHHHTT CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieag 119
                      e n   ++k N+ + ++v++aa +ag
       CDO72054.1  90 EDNFDFGVKVNIDSVRTVLDAARHAG 115
                      66777899*************99876 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.035
                      GGGSS--SHHHHHHHHHHHHHHHGGG-- CS
  Polysacc_synt_2 129 DKAvnPtnvmGatKrlaekllqalakes 156
                      D  + P +++G++K++ e ++ ++ ++ 
       CDO72054.1 144 DTIATPQSAYGMAKLVDEIFINEYTRRG 171
                      77889*************9999887765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05     0.098      37     133 ..      44     131 ..      16     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
                   HHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGT CS
  adh_short_C2  37 laeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnlssvgae 132
                    a +  ++v +++D td++q + l+++   kfg  D +    gi+ +        s+++fd  ++vn+ s+  ++ aa+++ +++g ++   ++++ 
    CDO72054.1  44 KAPQNVEAVtIKADLTDPTQADGLFDT---KFGVPDTVYCLHGIMSR-------GSEDNFDFGVKVNIDSVRTVLDAARHAGQRSGTVIKFIFTSSL 130
                   3333334445***************98...9***************9.......679****************************999987666655 PP

                   S CS
  adh_short_C2 133 r 133
                    
    CDO72054.1 131 A 131
                   4 PP

>> Enterotoxin_a  Heat-labile enterotoxin alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.27      12      58 ..      59     105 ..      50     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                    XXXXXX-EEEEEESS-HHHHHHHTEE--TTHHCCCCCSSGSB--HHH CS
  Enterotoxin_a  12 ssslyandlyradsrtPdevkrsgGllprGqseayergtplninlld 58 
                    + ++ a++l+ ++   Pd v    G+++rG ++ ++ g ++ni +  
     CDO72054.1  59 TDPTQADGLFDTKFGVPDTVYCLHGIMSRGSEDNFDFGVKVNIDSVR 105
                    56778999**********************************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1909.89
//
Query:       CDO72055.1  [L=288]
Description: hypothetical protein BN946_scf184943.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-75  254.8   0.0    1.2e-75  254.6   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.0   6.7e-80   1.2e-75       2     280 .]       7     287 ..       6     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 254.6 bits;  conditional E-value: 6.7e-80
                    HHHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHH CS
  F_bP_aldolase   2 nlkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaie 97 
                    ++  +l+kA+eegy++ a  +++ + v ++++aae+++sP+I+q+++ ++a+       + +++ +aa+   +asvp+a+hlDH+++ e+l+ a++
     CDO72055.1   7 RTLSILRKAEEEGYGILAQTCYDANCVIGLVRAAERCRSPAIIQMFPVTLAFG---KGPWLQFCLNAAH---QASVPIAVHLDHATDPEHLELALS 96 
                    6789**********************************************655...5588889999998...889********************9 PP

                    H.....S-SEEEE--TTS-.HHHHHHHHHHHHHHHHHTT-EEEEE-----------.TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS CS
  F_bP_aldolase  98 a.....gfsSvMiDgSelp.leeNialtkevverahalgvsvEaElGriggeedgv.vaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpk 186
                           f+S+M+D+S+ +  eeNia+++ +vera+ +g++vE+ElGr++g+e g+   +++ +T+p++a ef++ tg  +lA++iGn HGvy ++
     CDO72055.1  97 LaeqgiVFDSIMVDASHAEtDEENIAIARPYVERAERCGIAVEVELGRLEGGEAGLrMINDAKLTRPDKAREFMDGTGARILAPSIGNLHGVYLNP 192
                    9999988*********998689*******************************99975577799******************************** PP

                    ..--THHHHHHHHHH...--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHGGE-HHH-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 187 pkLdferlkeiqkav...vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkkekenkkydprkllkeaeeamkevvkekiellgsag 279
                    p+++ ++lk+++k     vpl+lHG++g+p e ++++i++G++KiNi++  r+ y+k++ ++ ++k     + + ea++ + +v+ + ++l+gsag
     CDO72055.1 193 PNFRQDILKDLHKSFrgsVPLCLHGTDGLPYELFKECIRNGISKININSWGRDPYAKKLAESLQSK--PFPDAVDEAVQVFVDVCDRFFHLFGSAG 286
                    ***********************************************************7774444..23356999*******************9 PP

                    - CS
  F_bP_aldolase 280 k 280
                    k
     CDO72055.1 287 K 287
                    7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2197.18
//
Query:       CDO72056.1  [L=458]
Description: hypothetical protein BN946_scf184943.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-27   96.7   0.0      2e-27   96.3   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
     0.0028   16.2   0.0     0.0043   15.6   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.037   13.0   0.0      0.058   12.3   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
      0.063   12.6   0.0      0.096   12.0   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      0.074   12.3   0.0       0.14   11.4   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
       0.17   11.7   0.0       0.67    9.8   0.0    2.0  1  MerR             MerR family regulatory protein


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   6.8e-31     2e-27     103     363 .]     171     446 ..     167     446 .. 0.85

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 6.8e-31
                    -THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 103 yasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                    ++++   l + g++ v  ++y +e+f    e   ++++e      ktk i++ +p+NPtG+++++  +   ++la+++n+ l+vDe+Y +f  +++
     CDO72056.1 171 HDPFRMTLTMLGIKPVLLHTYAKEGFLPSPERCADLITE------KTKAIVLVTPNNPTGAIYPPSLIASFAKLARQRNVALVVDETYRDFITTHT 260
                    78888899999****************************......************************************************965 PP

                    ..HTHHH.......HGGSTTSTT.....EEEEEESSSTTSSGGG-EEEEEEEH.HHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 199 ..davat.......ranveeepn.....llivgslsKafGlaGeRvGyilgna.avvsqlrklsrpfls.ssllqaavaaalsdallkqseleemr 278
                          +        +++ ++++      + + s+sK++ ++G R+G i++++  + s ++ l +  +  + + +++++a l  +l+   ++ e++
     CDO72056.1 261 phH---LfskpanaPSDAVPADWdwrgtFIHLFSFSKSYCIPGHRLGLICASPdVMPSIVKALDSLQICaPRP-PQVALAPLLPSLRA--FVRETA 350
                    441...2344555555555555578888999********************6615556666666655553444.44445555555644..****** PP

                    HHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTS...........TTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 279 qrlqkrrkelrdeLaelglkvlasqsgmflltdlsae..takelskkLleevgvyvtpgtsftv...........pgrlRitvAglteeeleelve 361
                      +++r++ ++++L  + +k+  sq+g++ +++ + +   a+e+++ L++e gv+ +p   f+              ++R++vA++++ ++e ++ 
     CDO72056.1 351 MAVAHRHTLFKARL-PARWKIG-SQGGYYAFVRHPFAgrHANEVCQRLAQEMGVVTLPAGFFGPkgeedrtvmdeDRWVRFSVANVDDRKVELVCV 444
                    **************.6699965.58********9999999********************99999*********999***************9998 PP

                    HH CS
  Aminotran_1_2 362 al 363
                    +l
     CDO72056.1 445 RL 446
                    76 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-06    0.0043     127     176 ..     200     252 ..     173     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-06
                      HHHHHHHCCTTEEEEEEESS-TTTT----...HHHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP 127 leelekaikentklvylEtptnpllkvvD...iekiaklakkagvlvvvDntf 176
                      +e+ +  i+e+tk++ l tp np+  +     i++ akla++++v +vvD t+
       CDO72056.1 200 PERCADLITEKTKAIVLVTPNNPTGAIYPpslIASFAKLARQRNVALVVDETY 252
                      6788899*****************99975444888899999999*******97 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05     0.058     126     175 ..     197     249 ..     185     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                  CBEGGGHHHH--TTEEEEEEESBETTTTEB--...HHHHHHHHHHTT-EEEEE CS
  Aminotran_5 126 eldldelekllnektklvaithvsnvtGtiqp...veeigklakkkgalvlvD 175
                  +  +++ ++l++ektk++ +   +n tG i p   +++++kla+++++ ++vD
   CDO72056.1 197 LPSPERCADLITEKTKAIVLVTPNNPTGAIYPpslIASFAKLARQRNVALVVD 249
                  55689999*********************988666788899999********9 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.2e-05     0.096      82     119 ..     180     218 ..     176     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
                      HTT-EEEEE-B.-TTTSSB-GGGCGGG--TTEEEEEEB- CS
  DegT_DnrJ_EryC1  82 elgakpvfvDv.dpdtynidpaaieaaitertkaIlpVh 119
                       lg kpv++    ++ + ++p++ + +ite+tkaI++V 
       CDO72056.1 180 MLGIKPVLLHTyAKEGFLPSPERCADLITEKTKAIVLVT 218
                      6899999998725567899*****************995 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.6e-05      0.14     125     167 ..     208     249 ..     175     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                       ek+k+i+l + nn   G ++++  ++  a++a+++++ l++D
       CDO72056.1 208 TEKTKAIVLVTPNN-PTGAIYPPSLIASFAKLARQRNVALVVD 249
                      35789999987777.59*************************9 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00022      0.67       8      30 ..     180     202 ..     179     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00022
                 HHTTTHHHHHHHHHTTSSTSEEE CS
        MerR   8 ltGvsprtLRyYEreGLipppeR 30 
                 ++G+ p  L+ Y +eG +p+peR
  CDO72056.1 180 MLGIKPVLLHTYAKEGFLPSPER 202
                 79*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3191.52
//
Query:       CDO72057.1  [L=1258]
Description: hypothetical protein BN946_scf184943.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-36  124.9   0.0      5e-36  124.3   0.0    1.3  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    1.6e-20   73.1   0.0    3.9e-20   71.9   0.0    1.7  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    5.5e-09   36.3   0.0    1.6e-08   34.8   0.0    1.8  2  RNase_H          RNase H
    7.9e-09   35.4   1.2    1.8e-08   34.2   1.2    1.6  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
     0.0057   17.3   0.1      0.017   15.8   0.1    1.8  1  zf-RVT           zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.4e-39     5e-36       3     221 ..     517     770 ..     515     771 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.4e-39
                 -TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGG CS
       RVT_1   3 Kkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellr 90 
                 K+g      p+ yRpi+l  +  k+l++++a rL  ++    ll+ n +g r gr t dav   ++ +k +++k+   ++l+lD+ +aF sv++++ll+
  CDO72057.1 517 KPGkpsylvPKAYRPIALEDTSSKVLESVVARRLAGLAemHGLLPANHFGGRAGRTTTDAVlflTQRVKDAWRKGHVATVLFLDITSAFPSVNHARLLH 615
                 5556668899**************************9988899*********************9999999**************************** PP

                 GGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH......HHHH CS
       RVT_1  91 kltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee......lqel 183
                  l + +vp+ l+ +i++fls+r + v+++  +s+++  + glpqGs+lSP+l+ ++  +ll+  +++ ++     ++DD++++++s++       l  l
  CDO72057.1 616 NLRKRQVPEDLVLWIQDFLSDRCTQVKFDDFTSEPLHASSGLPQGSPLSPILYLFYSADLLEVTDSKDPSKASGGFIDDTMLIVTSPTFeqniavLTDL 714
                 ****************************88889*********************************99******************99999******** PP

                 HHHHHHHHHHTT--BEGGG-EEE.......................ESSEEETTEE CS
       RVT_1 184 leaveewlkesglkinpeKtklvlft.................v.kseevkyLGvt 221
                 +  +  w k++ +++  +K +++++t                    se+ +yLG++
  CDO72057.1 715 VPQLLGWSKSHACRFDVAKFQMLHCTrnekrynplplviddhhIlPSESARYLGII 770
                 **************************************9998648*********97 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.1e-23   3.9e-20       2     118 ..     113     234 ..     112     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.1e-23
  Exo_endo_phos_2   2 liisvYippsd..elenlestlekllselkspkiiilGDfNakhplWgsedtds...sargeeLiefleehslsllnllksgptfkssng..ss 88 
                       i+svY+pps+  +++ l+++l++ l  +   + ii+G fNa+h +W+++   +   ++++e+L+ +l e++ls l l++ +pt++s ++   s
       CDO72057.1 113 SIFSVYNPPSSdsAIQPLQRALSDPLALNA--PAIIVGGFNAHHLMWSGPLVPQrtaRSDAESLLLLLAEFDLS-LALPPGTPTYWSDSHhtAS 203
                      69*********5566666666666665555..9****************544445569****************.666677899999999888* PP

  Exo_endo_phos_2  89 tiDltltsdnlals.kleleeedlgSDHrpi 118
                      t+Dl++ts++la+s +   ++  +gSDH +i
       CDO72057.1 204 TLDLVFTSTSLANSvTSCSTDYGHGSDHCAI 234
                      **************955556689*****987 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   4.5e-12   1.6e-08       4     142 ..     956    1089 ..     953    1090 .. 0.72
   2 ?   -3.7   0.0       3.3   1.2e+04      78     126 ..    1123    1175 ..    1116    1177 .. 0.65

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 4.5e-12
                  EEEEEEEEEECTTTCEEEEEEECTT..EEEEEEECCCCHHH....HHHHHHHHHHHHTT.SCSEEE...EEES-HHHHHHHHCCCHHHHHTTSSSET CS
     RNase_H    4 vvvYtDGsclgnpgeggagavlykegarnisapleeaqtnn....raELsAvieaLkalksdekvn...iytDSkYvvkgitqwvhrwkknawktts 93  
                    v+tDGs +   g  ga+a++++  +++  ++++  ++n       EL  ++ aL   +s+++v+   i  D k ++ ++ +      ++ ++ ++
  CDO72057.1  956 FCVFTDGSGF--AGDIGAAAFAKGR-NQEHVRRVNLGSDNEhivfEGELAGMVLALDVIESEPRVTranILLDNKAAIRAVSK------RRPRPGQQ 1043
                  579*****77..4444555555433.344445555456666222257**********777885555555*****999997775......66666666 PP

                  TSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H   94 eqkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142 
                     +++     + lk+  +  ++++ wv+gH+Gv  gNe+aD+ Ak+a+
  CDO72057.1 1044 LV-ELFH-RRLKHLKSKRRSLSITVVWVPGHKGV-AGNERADMEAKDAS 1089
                  66.5777.6666777888999*************.5**********985 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
                  HCCCHHHHHTTSSSETTSSBHTT....HHHHHHHHHCHC.SSEEEEEE-SCCSS CS
     RNase_H   78 tqwvhrwkknawkttseqkpvkn....kdlaellkelak.kkkvqlkwvkgHaG 126 
                   +w  rwk  ++ t  +  +v      k++ +l+k+l + + ++  +   gH G
  CDO72057.1 1123 RDWTDRWKASKQGTRLAR-NVDPsppgKQVLKLFKDLPRrQASILTQLRSGHVG 1175
                  468899988887665555.45556677888888888877455566666666665 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   1.2   5.1e-12   1.8e-08       2     233 .]      13     231 ..      12     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 5.1e-12
                    EEEESTGCHHHHTHHHHHHHHHHHHHHCTT...SEEEEEEEBSCTCHHHHHHHHH.....................................TTCE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx.....................................xxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltayda...DvlgLQEvdddelsriplllal.....................................ggfl 57 
                    + N+  q             l+++l ++++   D+l+LQE    +ls+  ll+++                                        +
     CDO72057.1  13 SLNCRKQ----------PEVLKSVLNTTNPaewDLLCLQE---PPLSIDRLLSFRsprwnlvlpssaasrgegemirsviyvnnhlpsdlytQISV 95 
                    6677775..........77799******999*********...555555555555**9*9999999999999999999999999999999884444 PP

                    EEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  58 gasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapvivaGDf 153
                    ++ +               v+ + +l sl    f+ +n ++   +++pl + l                            ++++ +ap+i++G f
     CDO72057.1  96 PSLD--------------IVALKLSLPSLSLSIFSVYNPPSSDSAIQPLQRALS---------------------------DPLALNAPAIIVGGF 150
                    4444..............588899999999999999999999999999777776...........................6689*********** PP

                    SSSTSGGGBSCGHHHHHHCTTTHH.........SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 154 Narpsdddsrvlrtrglalapapv.........glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                    Na++  ++ ++   r ++ + +            l+l++g+pt++  ++ + s+lD ++ s++la  +++   +++         +SDH
     CDO72057.1 151 NAHHLMWSGPLVPQRTARSDAESLllllaefdlSLALPPGTPTYWSDSHHTASTLDLVFTSTSLANSVTSCSTDYGH--------GSDH 231
                    **999999999999999888887356677889******************************777777777777774........6999 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.7e-06     0.017      31      79 ..    1161    1208 ..    1145    1212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.7e-06
      zf-RVT   31 kvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCp 79  
                  +   +l  l ++++  +  l++ ++ ss+ C+ C+   Et++H +l+C+
  CDO72057.1 1161 RQASILTQLRSGHVGLNAFLHRIKAVSSPLCSTCQS-AETVQHYLLTCR 1208
                  5555666677788888999*****************.6**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 8694.39
//
Query:       CDO72058.1  [L=845]
Description: hypothetical protein BN946_scf184962.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6257.93
//
Query:       CDO72059.1  [L=184]
Description: hypothetical protein BN946_scf184962.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.6   0.0    2.1e-13   50.2   0.0    1.1  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.2e-17   2.1e-13     273     324 .]      33      88 ..       2      88 .. 0.70

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.2e-17
     Plavaka 273 e.....lkklwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 +      ++  +  g+k +++p+w++lp+++i++++tpD+L ql +gv+k Hlv+W+
  CDO72059.1  33 NpgtrcWRRGSHITGIKCIQQPYWANLPFVNIYRSITPDILRQLCQGVVK-HLVSWI 88 
                 343344444556689***********************************.*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1305.16
//
Query:       CDO72060.1  [L=210]
Description: hypothetical protein BN946_scf184962.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1670.24
//
Query:       CDO72061.1  [L=291]
Description: hypothetical protein BN946_scf184962.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2305.74
//
Query:       CDO72062.1  [L=589]
Description: hypothetical protein BN946_scf184962.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-75  255.0   4.1    1.6e-54  185.3   3.9    3.0  2  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   1.2e-22   2.2e-18       1      84 [.     228     311 ..     228     313 .. 0.94
   2 !  185.3   3.9   8.9e-59   1.6e-54     140     324 .]     313     480 ..     310     480 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.2e-22
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkger 84 
                 F+++  ++k++D+lp + ++wk e ++  g+  +e+++ +ke++elw+rd +++i+el+gnp+f+d + yaPe++y+d + ++r
  CDO72062.1 228 FQSNYLFYKMVDQLPGRAVNWKLEVFEAVGDEVGEDGQPKKERVELWMRDAVHCIRELMGNPAFRDCICYAPEKHYADPQGKTR 311
                 899999************************999********************************************8844455 PP

  == domain 2  score: 185.3 bits;  conditional E-value: 8.9e-59
     Plavaka 140 nipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgw 238
                 n+++++ rk+ ++++vll+yLp++kl+++  s++ r l +++lfH+c++++lep  +a+k+gv mtcadg +rrv+pila y+aD+pEq+lva++ ++ 
  CDO72062.1 313 NLDQNMWRKPFSHTTVLLGYLPVAKLECF--SEKRRALEQYHLFHQCMKALLEPFIAAAKDGVLMTCADGLIRRVFPILATYVADHPEQCLVAACQENY 409
                 8999*************************..89999999************************************************************ PP

     Plavaka 239 CpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 Cpk  a+ +   +              + ++a++    ++++ gl + ie Fwedlp+++i+++ltpD+LHql+kgvfkdHlv+Wv
  CDO72062.1 410 CPKDPARITAALE-------------GAARSATQ-KPPECSQWGLCA-IELFWEDLPHCNIFAALTPDILHQLHKGVFKDHLVSWV 480
                 **97666555433.............22222322.4568******97.77***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4215.95
//
Query:       CDO72063.1  [L=130]
Description: hypothetical protein BN946_scf184962.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 949.73
//
Query:       CDO72064.1  [L=779]
Description: hypothetical protein BN946_scf184962.g7, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-17   63.2   0.0    4.8e-17   62.3   0.0    1.4  1  rve              Integrase core domain
    4.1e-11   42.7   0.1    4.6e-10   39.3   0.1    2.2  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    0.00021   21.1   0.2    0.00059   19.7   0.2    1.7  1  gag_pre-integrs  GAG-pre-integrase domain
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.32   10.8   0.0    1.6  1  rve_3            Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.1e-20   4.8e-17       2     115 ..     472     587 ..     471     590 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.1e-20
         rve   2 trpgelwqvDvt.vvripdggg.kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftr 98 
                 t+p el+++D+   +r ++ g+ ++y++ ++d fs+l +a++l++++da  +++  ++ ++ + g++++rv+sD+g ey  ++f++ l dlgi+ + + 
  CDO72064.1 472 TEPLELVHTDLDgPMRTASVGSgFLYFASFIDNFSGLGIAYFLKHKSDALKAFDNFKAWAETQTGKKIKRVRSDRGGEYLFNKFTQHLLDLGIEYQKST 570
                 789********998887777666**************************************************************************** PP

         rve  99 pgrpqdnGkvErfhrtl 115
                 p +pq+nG++E  +rt+
  CDO72064.1 571 PDSPQQNGRAECWNRTI 587
                 ****************8 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1     1e-13   4.6e-10      22     135 ..      59     175 ..      24     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1e-13
  Retrotran_gag_2  22 elvkeektakevWdkLkelyekksaankltlrkklfsl.kmkegesvadhinkleelvneLsalgvkiddedkvvllLasLPesyetfvtaies 114
                      ++v  + +ak++Wd Lk+++   ++a  + l+  + +l  m ++  ++d + +  + +++ s+ g  ++++ +vv +L++LP+sy+t+ t + s
       CDO72064.1  59 KRVAASYSAKDMWDVLKKEFGTPDTAEAIGLLMSFSNLpPMMDTHPLRDQLGTYITRIRDASNGGMHFTESQQVVFILMKLPPSYSTLSTSLTS 152
                      5677889******************************94599999************************************************* PP

  Retrotran_gag_2 115 ..seedltleevieklleeeerr 135
                        s +d t++ ++ k+l ee+ r
       CDO72064.1 153 shSLKDWTVKWIQGKVLAEESLR 175
                      9******************9765 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   1.3e-07   0.00059      20      51 ..     429     458 ..     412     467 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-07
  gag_pre-integrs  20 nkssinlWHrRLGHpsfsrlkkLfkkgllpgl 51 
                      +k++ + WH+R+GH + ++l++L k+  ++g+
       CDO72064.1 429 SKTDYKTWHCRFGHTGKEALHHLPKN--VKGV 458
                      578899*****************974..5555 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.2e-05      0.32       2      38 ..     563     599 ..     562     619 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.2e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellneelfrs 38 
                 gie + + p +PqqNg +E  n+t+ +++ ++ ++  
  CDO72064.1 563 GIEYQKSTPDSPQQNGRAECWNRTIIEKAMSMLHRAG 599
                 78899999****************9988877666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.57
# Mc/sec: 4136.49
//
Query:       CDO72065.1  [L=410]
Description: hypothetical protein BN946_scf184962.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-48  164.5   0.1    4.7e-48  163.9   0.1    1.3  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.1   2.6e-52   4.7e-48      80     241 ..       1     166 [.       1     167 [. 0.94

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 2.6e-52
       RVT_2  80 ldvdsafLnaeldeevyvkqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyv..rgtgegklivalyvddlliagsd 176
                 +dv++af n++l+ee+y+ qP G ++ ++e++v+ L+k++yGlkqa++ Wn ki+k L +lgf+rs +  G+yv  r+ g+   iv lyvddll+ g+d
  CDO72065.1   1 MDVKTAFPNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASRQWNLKIHKSLLDLGFTRSYSDVGVYVywRQGGDKVTIVILYVDDLLLLGDD 99 
                 9**********************************************************************98644777777799************** PP

       RVT_2 177 ikiledvkkelakkfklkdlgkvskfLGieiaqeag..giklsladyiakvvkkfeltdaktvatPl 241
                  k ++++k  l+k++k+ dlg+v++fLG+ i  +     i++ +++yi+++++ f+++d+k+ +tPl
  CDO72065.1 100 RKHIKQIKDALKKQYKMTDLGTVKRFLGLRISHDRTirRIEIDQEEYIQSIIERFDMADCKPAHTPL 166
                 *******************************986551168899***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2793.56
//
Query:       CDO72066.1  [L=93]
Description: hypothetical protein BN946_scf184962.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00019   21.9   0.2    0.00025   21.6   0.2    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   1.4e-08   0.00025       1      64 [.      17      82 ..      17      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.4e-08
                   XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  1 eptaenikkvlkaagv..eveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaa 64
                   +p+a+++k vl a+ v  e ++ar++  +++l+g di+    + +++l++a++ +aaa ++++aa+
     CDO72066.1 17 SPSAADVKDVLGAVSVqsEFDDARLEKIIHELQGGDIDRSSRALRSSLCSAQTGSAAAKGQQQAAK 82
                   59*********9998866899**************************9966666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 675.41
//
Query:       CDO72067.1  [L=130]
Description: hypothetical protein BN946_scf184962.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.085   13.3   0.0       0.11   13.0   0.0    1.2  1  Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger 


Domain annotation for each model (and alignments):
>> Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.9e-06      0.11      41      86 ..      51     108 ..       6     117 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-06
  Na_Ca_ex_C  41 dgklveea...........eeseeakdleesr.kevirilkelkqkyPdkdleqleel 86 
                 dg+  e++            + e+ +d+e++r  e+ +i++ l+++ P+ +++ l+ l
  CDO72067.1  51 DGESEEDRtatqqpfdlasWRLEKRHDMEHARsIEYRSIMRYLRRQAPEDTRKRLVML 108
                 2222222233444577776667899*******88*******************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 946.60
//
Query:       CDO72068.1  [L=600]
Description: hypothetical protein BN946_scf184962.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-25   90.2   0.0    2.9e-25   89.2   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40
      2e-12   47.0   0.5    6.7e-12   45.3   0.3    2.0  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   3.2e-29   2.9e-25       1     205 [.     177     590 ..     177     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 3.2e-29
                    EEEEES-BSS.TTCG.GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHHTTTCES CS
                    xxxxxxxxxx.xxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeet.dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegleerekvd 92 
                    ll +H+DvVp e  t d+w++ pfs+  +  +++GrG++d+k g+++ + a+++l   g+kp +++vl+   dEE g+ +Ga a+ + l+ +   +
     CDO72068.1 177 LLTAHQDVVPvEPLTvDEWHHpPFSGFYDGEYIWGRGSCDDKPGLIGTFTAVEELLHIGFKPTRSVVLAYGIDEERGGiSGATAIRDYLL-DTYGE 271
                    689*******9777889**********9988********************************************877899999999777.45667 PP

                    EEEEEEEESSSBTCHSTETEEEE......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxx......................................................................... RF
  Peptidase_M20  93 avfelhieepgileagklaigvv......................................................................... 115
                    ++f++++ e+g+        +v+                                                                         
     CDO72068.1 272 YAFSILVDEGGGYRVTD---NVImstpgvaekgkfdvrfeisapgghssvppehtsigmlaavikqlesnphtahlnrsgiyysllqcqaahdhgl 364
                    77778888777777333...33345577888888888888******************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     CDO72068.1 365 sshlrdlitrsrtsdralaaleaelartdrlfgalagttqavdvvrggvktnalperaevvvnhridihssvaalkkriaavvqpvaerfgldlda 460
                    ************************************************************************************************ PP

                    ..............................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEES.....SSBHTHHHHTTT.EEEEE CS
                    ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.....xxxxxxxxxxxx.xxxxx RF
  Peptidase_M20 116 ..............................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsg.....pggtdarffagi.ptvmi 174
                                                   + +++ +++ p++l ++ ++ +l ++ +   g++   ++++g     +   d+++++++ + ++ 
     CDO72068.1 461 fgenvvlpsdgeresagllrisdafgtalePAPITPMGESGPFKLLSGTIIGVLGASNRT--GYDkKIFVAPGmstgnTVLPDTKHYWKLtKHIFR 554
                    ***************************996699999999999999999999999888666..6664333344444357777799999999545555 PP

                    EE.SS..G..GCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xx.xx..x..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 175 fg.pg..s..glaHspnEyvdledlekgikvlarll 205
                    +g  +  +   +aH++nE ++ e + ++i++++ ++
     CDO72068.1 555 YGhINtaDsyNGAHTVNEALRAEGFIEAIRFFTWII 590
                    99777543899*******************998766 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.7   6.3e+03      36      48 ..      87      99 ..      78     146 .. 0.55
   2 !   45.3   0.3   7.5e-16   6.7e-12       2     106 ..     298     452 ..     297     454 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.7
                HHHCSCTTEEC.. CS
   M20_dimer 36 llaeledeegdia 48
                +l++le+e++  +
  CDO72068.1 87 FLNALEAEYNTDE 99
                5666666655433 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 7.5e-16
                 EB-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC..................................................... CS
   M20_dimer   2 ghkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdia................................................... 48 
                 ++kG  +++ ++   +gHs+ +p++   +i +la ++ +le++++  +                                                   
  CDO72068.1 298 AEKGKFDVRFEISAPGGHSSvPPEHT--SIGMLAAVIKQLESNPHTAHlnrsgiyysllqcqaahdhglsshlrdlitrsrtsdralaaleaelartdr 394
                 7999**********************..***************99888************************************************998 PP

                 ...TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  49 eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                 +   l++tt +v +++gG ++n++p++ae+ ++ R+  ++++++++++i+++++ +a+
  CDO72068.1 395 LFGALAGTTQAVDVVRGGVKTNALPERAEVVVNHRIDIHSSVAALKKRIAAVVQPVAE 452
                 777899**********************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.48
# Mc/sec: 3783.45
//
Query:       CDO72069.1  [L=270]
Description: hypothetical protein BN946_scf184962.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-14   51.8   0.1    1.1e-13   51.1   0.1    1.3  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.03   14.3   2.7       0.07   13.1   2.6    1.7  1  ATP_sub_h  ATP synthase complex subunit h
        2.6    8.5   5.7        3.7    8.0   5.7    1.2  1  NUDE_C     NUDE protein, C-terminal conserved region


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   1.8e-17   1.1e-13       1      69 [.       9      76 ..       9      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.8e-17
                HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST CS
      UQ_con  1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtk 69
                rl ke+  ++k++p+ + a++ ++ n+ +w+ +i gp+d+pY+gg ++  l fp++YP+kpP +k+ t+
  CDO72069.1  9 RLSKEYIAMQKEPPPFVWAAPDEK-NILTWNYIIRGPPDSPYAGGEYHGVLLFPSEYPFKPPGIKMLTP 76
                799******************996.****************************************9983 PP

>> ATP_sub_h  ATP synthase complex subunit h
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.6   1.2e-05      0.07      20      57 ..     170     212 ..     157     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
   ATP_sub_h  20 keLkayk.....pkplkaadaegaVkkwsaPaaPkaPeleadl 57 
                 keL+a       p+p+ +++ +++V ++++P++P++P++ +++
  CDO72069.1 170 KELRASAsstnpPSPTPPTSCAASVATFTTPQTPAMPTSASAS 212
                 677766666666777779999*****************64443 PP

>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.7   0.00062       3.7      65     133 ..     147     216 ..     129     242 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00062
      NUDE_C  65 lrrrkplsl.sspstpqsleiekrspavqasss.PviatppekslsslatgsetatppsPpasess..dllrk 133
                 +r r+ ++   +p++   +++++++ +++ass+ P   tpp++   s+a   + +tp +P++  s+  ++ +k
  CDO72069.1 147 KRFREAFPEyCTPTARDVPNMAQKELRASASSTnPPSPTPPTSCAASVA---TFTTPQTPAMPTSAsaSSDDK 216
                 3445555554444444666677777777776432556666666655555...566777776655553322223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1931.70
//
Query:       CDO72070.1  [L=214]
Description: hypothetical protein BN946_scf184962.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1596.24
//
Query:       CDO72071.1  [L=450]
Description: hypothetical protein BN946_scf184962.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-68  231.5   0.0    1.5e-68  231.3   0.0    1.1  1  DAP3       Mitochondrial ribosomal death-associated protein 3
    1.9e-06   28.4   0.0    3.2e-06   27.6   0.0    1.3  1  AAA_16     AAA ATPase domain
     0.0091   16.0   0.0      0.017   15.1   0.0    1.4  1  ResIII     Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.041   13.8   0.0    1.4  1  ATPase_2   ATPase domain predominantly from Archaea
       0.04   14.2   0.0       0.14   12.4   0.0    1.9  1  AAA_22     AAA domain
      0.076   12.2   0.0       0.11   11.7   0.0    1.2  1  DUF2075    Uncharacterized conserved protein (DUF2075)
      0.083   12.6   0.0       0.14   11.9   0.0    1.4  1  AAA_30     AAA domain
      0.084   12.6   0.0        0.2   11.4   0.0    1.6  1  IstB_IS21  IstB-like ATP binding protein
        0.1   12.9   0.0       0.33   11.3   0.0    1.8  2  AAA_19     AAA domain
       0.11   12.0   0.0       0.17   11.3   0.0    1.2  1  PhoH       PhoH-like protein
       0.16   11.8   0.0       0.31   10.8   0.0    1.4  1  AAA_29     P-loop containing region of AAA domain
       0.16   10.8   0.0       0.24   10.3   0.0    1.1  1  AAA_10     AAA-like domain


Domain annotation for each model (and alignments):
>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3   0.0     1e-71   1.5e-68       1     311 [.     138     441 ..     138     442 .. 0.96

  Alignments for each domain:
  == domain 1  score: 231.3 bits;  conditional E-value: 1e-71
                 ----SHHHHHHHHHTTS.-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS--EEEEES-GGGGTSS-S--EEESTTSSEEE-HHHHHHHHHHHTTSSH CS
        DAP3   1 llvReetlelikklkka.dkkkkvkrlvltGekgsGKSvlLlqalayAlekgwvvlhvpeaedlvngtteyapseseeklyvQpeataalLsrilkaNe 98 
                 ++vRe+t++++++l++a  +++k +r+v+tG+ gsGKS l+lqa+ y+++k+w+ l +p+a +lvn++t+ya+++ ++++y Qp+ +++lL+r+   N+
  CDO72071.1 138 SVVREATVDVLDQLDNAaGSSSKENRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTLYIPRAISLVNSSTAYAYDA-RTQTYGQPAFAQQLLKRFADVNA 235
                 69***************99********************************************************.*********************** PP

                 HHHTT-EE-S-EE-SSS-EE-SSEEHHHHHHHHHH-SSSHHHHHHHHHHHHHHHTTSS--EEEEEE-GGGGSS-BS---TTS--B-GGGBHHHHTTHHH CS
        DAP3  99 evLkklklskeyellkresvkagstLleLvklgikdaksawdvfqallkeLkaqskgrvpvlvtvDglnallkntkyksadkkpihahdLtlvkhfldl 197
                 ++L++l+++ +y+l  +++v+ag++L++L+++g++ +++a++v++ +l+eL  q+k   pvl++vD+++al  +++y+++ +k +++ +L l++++l++
  CDO72071.1 236 ALLQSLSVQGSYPLE-ERTVPAGAPLANLINVGVEIQHYAPTVLKLVLDELALQTK--YPVLLAVDDFQALYCTSQYRDTFFKSVKSYHLMLPRTLLEF 331
                 **************8.9***************************************..***************************************** PP

                 ..HS--SSS-EEEEE---SS-SS--SS---HHHHHTTTTTGGG-S-E................EEE--.---GGGTHHHHHHHHHTT---STTSSHHHH CS
        DAP3 198 lsgksklknggvvvaLaatsssntpksatlevallqeearpqldpYvkkydkrvaealkgkvepieve.glskeEarslleyyadsgvlqekvneelve 295
                 +sgk+++++g+++ aL+  +++++    +l  al+ e+     +pYv + +++++e  + +++ + v+ +l+ +Ea+s+++++++ + l    ++e++ 
  CDO72071.1 332 ASGKKNFARGAFLGALSMQDTKFRAP-LELIEALGLEPL-GPSNPYVPR-QPELVEYAN-GLKNFPVPeQLTVDEAASIYDLWQKTKALHLPLSDEMFL 426
                 ************99999999999888.566667776666.689****77.999999988.9******999***************************** PP

                 HHHHHTTSS-HHHHHH CS
        DAP3 296 eklslsgngnprelek 311
                  k++ + ngn + + k
  CDO72071.1 427 AKYTEA-NGNAGRFVK 441
                 ****99.***999877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.2e-09   3.2e-06       4     147 ..     140     303 ..     138     324 .. 0.59

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.2e-09
      AAA_16   4 GReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipy..salaqalareellrqlldeaesaeleaw 97 
                  Re+ ++ L ++ +++ s++  + ++++G +G+GKs l+ ++ ++  ++++++l+     +   s+++y  +a +q+  +   ++q l +     +++ 
  CDO72071.1 140 VREATVDVLDQLDNAAGSSSKeNRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTLYIPRAISlvNSSTAYayDARTQTYGQ-PAFAQQLLK----RFADV 233
                 5777775555544444444446999**************77777888887888555555554556655554445555544.333333333....22233 PP

      AAA_16  98 rekleeala.............avpelagaea............srllellkrll.allsrderplvlvlDdlqwa 147
                  ++l+++l+             a++      +            +    +lk  l +l+ +++ p++l +Dd+q +
  CDO72071.1 234 NAALLQSLSvqgsypleertvpAGA------PlanlinvgveiqHYAPTVLKLVLdELALQTKYPVLLAVDDFQAL 303
                 3333333332223334344333222......1334555777885444555555557777777999*********54 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.017      11      56 ..     143     197 ..     135     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                 HHHHHT...........TTSEEEEEESTTSTHHHHHHHHHHHH-S.........- CS
      ResIII  11 aienlleklks.....krdkrglikmaTGtGKTlvaaklierllkkgkee....k 56 
                 a  ++l++l++      +++r+++    G+GK+++++++++++ +k++      +
  CDO72071.1 143 ATVDVLDQLDNaagssSKENRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTlyipR 197
                 44555556655666678999*************************9874444444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.7e-05     0.041      18     131 ..     159     304 ..     146     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienledkdkyviyy...ialreesiskldefieeeeekkklekal............................... 82 
                 ++++ ++ +G  gsGK+ L+ ++++   +k+   +y+   i+l ++s++++ +   +++ +  ++++l                               
  CDO72071.1 159 SKENRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTLYIpraISLVNSSTAYAYDARTQTYGQPAFAQQLlkrfadvnaallqslsvqgsypleertvpag 257
                 345567779******************999998888733356666666666665458888888888888999999999999999999999998766432 PP

    ATPase_2  83 ..giavpkaeleeilk...eksklvfkaielllekikkkgkk.iiiiiDelqkli 131
                   +     a+l   ++   e + ++   ++l+l+++  + k  + + +D++q l 
  CDO72071.1 258 apL-----ANL---INvgvEIQHYAPTVLKLVLDELALQTKYpVLLAVDDFQALY 304
                 221.....222...22335778999999999999999999984445689988775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.6e-05      0.14       6     104 ..     162     304 ..     157     331 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.6e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsst.sskdllrellralglelka..................... 70 
                 + +v tG +G+GK++l+ + ++  +++++  +            ++++ + +++  +t ++  ++++ll+ + + + a                     
  CDO72071.1 162 NRIVFTGKAGSGKSYLMLQAVQY-CIQKE--WltlyipraislvNSSTAYAYDARTQTyGQPAFAQQLLKRFADVNAAllqslsvqgsypleertvpag 257
                 56899***********9998875.44333..35579999999977777779999999999999********9988888999999998888888888888 PP

      AAA_22  71 ............erlsseellealeqalrarav.ielliiDEaqhlr 104
                               +    +l+++ + l  + + ++ll +D++q l 
  CDO72071.1 258 aplanlinvgveIQHYAPTVLKLVLDELALQTKyPVLLAVDDFQALY 304
                 87777777666544444444466666666666677888888888875 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.4e-05      0.11       4      29 ..     164     189 ..     161     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
     DUF2075   4 vlVtGvaGtGKtvvllnllaeledde 29 
                 ++ tG+aG+GK++++l+++  + ++e
  CDO72071.1 164 IVFTGKAGSGKSYLMLQAVQYCIQKE 189
                 5779***************9993332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.3e-05      0.14      16      62 ..     159     212 ..     149     284 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-05
      AAA_30  16 sgdrvavltGpAGtGKttalkalreaweaag.......grviglAptgkaAkvL 62 
                 s++   v tG AG+GK++++ ++++   +++       + + ++ ++ + A + 
  CDO72071.1 159 SKENRIVFTGKAGSGKSYLMLQAVQYCIQKEwltlyipRAISLVNSSTAYAYDA 212
                 34446789**********998888776666545666655555555555555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013       0.2      46      95 ..     160     210 ..     138     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavraglsvlfv.rvedLveelkrarr 95 
                 k++ iv++G +G GKs+l     +  +++++ +l++ r+  Lv++  +   
  CDO72071.1 160 KENRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTLYIpRAISLVNSSTAYAY 210
                 556699**************999999****999998466677776555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00022      0.33       7     119 ..     158     309 ..     152     323 .. 0.55
   2 ?   -3.4   0.0       7.6   1.1e+04     103     117 ..     395     409 ..     380     416 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp...eeillvaftgrAakelrerlaalgaeatTiHrlal......................... 77 
                  +ke+ ++ t+ +G+GK++++ ++v+++++ + + +   + i lv  ++  a     r++++g++a       +                         
  CDO72071.1 158 SSKENRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTLyipRAISLV--NSSTAYAYDARTQTYGQPA-------Faqqllkrfadvnaallqslsvqgsy 247
                 788899999********************9996654222222222..2222223333343345552.......22222333444555555555556666 PP

      AAA_19  78 ....................ldfddlltealelleeaeeekklqeee..llivDEfqdvd.elqy 119
                                     +++++      ++l+   +e  lq ++  ll vD fq ++   qy
  CDO72071.1 248 pleertvpagaplanlinvgVEIQHYA---PTVLKLVLDELALQTKYpvLLAVDDFQALYcTSQY 309
                 666666666666666665442222222...12222122223333333336777777777666555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.6
      AAA_19 103 eellivDEfqdvdel 117
                  e l vDE+  +++l
  CDO72071.1 395 PEQLTVDEAASIYDL 409
                 457899999888744 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.17      19      52 ..     161     193 ..     146     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                 -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEE CS
        PhoH  19 ndivfaiGpaGtGKtylavalavealkkkkvkri 52 
                 ++ ++ +G+aG+GK+yl +  av+++ +k+   +
  CDO72071.1 161 ENRIVFTGKAGSGKSYLML-QAVQYCIQKEWLTL 193
                 4445668**********76.57888777776555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.31      24      43 ..     163     180 ..     151     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
      AAA_29  24 atlltGpsGsGKSTllDAiq 43 
                  +++tG+ GsGKS l+  +q
  CDO72071.1 163 RIVFTGKAGSGKSYLM--LQ 180
                 689**********987..44 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.24      15      55 ..     155     195 ..     147     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
      AAA_10  15 kgsktnasasliiGdlGnGKSvlakllvlyisllggkalii 55 
                  gs ++    +++G+ G GKS+l+  +v y+   +   l+i
  CDO72071.1 155 AGSSSKENRIVFTGKAGSGKSYLMLQAVQYCIQKEWLTLYI 195
                 5777777888******************9998777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3434.23
//
Query:       CDO72072.1  [L=739]
Description: hypothetical protein BN946_scf184962.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.4e-103  344.4   0.3   9.2e-103  343.7   0.3    1.3  1  Kinesin         Kinesin motor domain
    2.8e-52  176.6   0.0    4.7e-51  172.7   0.0    2.6  1  Microtub_bd     Microtubule binding
     0.0032   18.1   9.8     0.0032   18.1   9.8    3.8  4  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
  ------ inclusion threshold ------
      0.014   15.4   5.0      0.014   15.4   5.0    4.1  6  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
      0.056   12.9  21.1       0.13   11.8  21.1    1.5  1  Golgin_A5       Golgin subfamily A member 5
       0.52   10.4   5.4       0.39   10.8   0.8    2.8  2  XLF             XLF-Cernunnos, XRcc4-like factor, NHEJ compon
       0.63    9.3   9.8        1.5    8.1   9.8    1.6  1  FAM76           FAM76 protein
        1.1    8.9  17.3       0.67    9.6  10.9    2.6  2  SHE3            SWI5-dependent HO expression protein 3
        1.1    9.3  25.6       0.19   11.8  14.3    2.9  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
        2.2    6.7  23.3        1.2    7.6   8.9    2.2  2  Macoilin        Macoilin family
        2.3    8.5  14.5        9.7    6.6   5.8    4.1  3  KxDL            Uncharacterized conserved protein
        2.8    6.8  28.6       0.83    8.5  20.0    2.3  2  Spc7            Spc7 kinetochore protein
        4.5    6.9  31.0         45    3.6  30.0    2.8  1  Lebercilin      Ciliary protein causing Leber congenital amau
        4.9    7.3   9.6        0.5   10.6   4.7    1.8  2  T2SSN           Type II secretion system (T2SS), protein N
        8.9    3.7  26.4         14    3.1  26.4    1.1  1  DUF3584         Protein of unknown function (DUF3584)
        9.2    6.8  32.5       0.97   10.0   6.4    2.9  2  APG6_N          Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.7   0.3  8.2e-106  9.2e-103      26     332 ..     402     725 ..     374     726 .. 0.94

  Alignments for each domain:
  == domain 1  score: 343.7 bits;  conditional E-value: 8.2e-106
                 CEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC...................TTTSBSHHHH CS
     Kinesin  26 eeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk...................eeeeeGiipr 105
                 + +++s++ ++++ e +f+Fd+vf++++tq+ev+ee+ ++l +s+ +Gyn+++faYGqtgsGK++Tmeg                    ++  +G+ipr
  CDO72072.1 402 RASSESATGQERKDEWQFTFDRVFEPHSTQAEVFEEI-SQLAQSCTDGYNVCVFAYGQTGSGKSFTMEGGsvrsssstanhvvtqpigqSDVTAGMIPR 499
                 56677888899999**********************5.*******************************99*****************98899****** PP

                 HHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHC CS
     Kinesin 106 aleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSS 204
                 a+e++F+  ++ +++  ++++++ ++lEiYne+i DLL + +  +kkk +i++d+k+g+++v++++ v + sa++v +ll++++ +r+va+t +ne+SS
  CDO72072.1 500 AVEQVFRVADDLRSK-GWQYKMEGQFLEIYNETINDLLGKGE-FDKKKHEIKHDPKTGRTTVTDVNVVPLASATQVRTLLAVAQGRRTVAATLMNERSS 596
                 *********999987.9***********************95.556679************************************************** PP

                 CSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSS.TCHHHHHHHHHHHHHHHHHHHHHHHHHHT...CCTSTSCGGGSHHHHHTGGGHS CS
     Kinesin 205 RSHavftitleqknlkeeteekvkisklnLvDLAGsErasktga.aegerlkEaaniNkSLlaLgrvisaLaek...kkskhipYRdSkLTrlLqdsLg 299
                 RSH+vft++++ +n  ++++     ++lnLvDLAGsEr++k+ga  ++erlkE++niNkSL+aLg+vi+aL ek   k++khipYR+SkLT lLq+sL+
  CDO72072.1 597 RSHSVFTLRIRGENALTGES---CEGSLNLVDLAGSERLEKSGAaGDRERLKETQNINKSLSALGDVIAALGEKgegKSDKHIPYRNSKLTYLLQNSLS 692
                 **************887776...889*****************9667889**************************99********************* PP

                 SSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCT CS
     Kinesin 300 Gnsktlmivtvspssenleetlstlkfaerake 332
                 Gnsktlm++++sp +++l+e+l++l+fa+++++
  CDO72072.1 693 GNSKTLMFLNLSPLATHLHESLCSLRFATKVNN 725
                 *****************************9987 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.0   4.2e-54   4.7e-51       2     149 .]     316     536 ..     315     536 .. 0.90

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 4.2e-54
                  HHHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T.EEEETT....T.................................................... CS
  Microtub_bd   2 ekeetlRrkleNtiqelkGniRvfarvrpelesekakikfp....e.................................................eek 46 
                  ++ e+ Rrkl+N +qelkGniRvf+rvrp l+s+ ++ +f+    +                                                 +e+
   CDO72072.1 316 REGESVRRKLHNMVQELKGNIRVFVRVRPVLRSDIITTTFNlsggSfgaitdgtgspdpeeearmreeamapiafpdkmdhreivlrassesatgQER 413
                  567899***************************9866666654441555556666777777788888888888888899999************9889 PP

                  TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHHTT--EEEEEEES....................................ST-HCHHHHHHHHHHCC CS
  Microtub_bd  47 kkkkefsFdrvfeseseqeevfeeisqlvqsaldgynvcifaygqTGsGKtyTmeg....................eeeeagmipraveeifetisel 124
                  k + +f+Fdrvfe++s+q+evfeeisql+qs+ dgynvc+faygqTGsGK++Tmeg                    ++ +agmiprave++f+++ +l
   CDO72072.1 414 KDEWQFTFDRVFEPHSTQAEVFEEISQLAQSCTDGYNVCVFAYGQTGSGKSFTMEGgsvrsssstanhvvtqpigqSDVTAGMIPRAVEQVFRVADDL 511
                  9999**************************************************************999999998778899***************** PP

                  TSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 125 kekgwkyeielqfveiynekvqDlL 149
                  ++kgw+y++e+qf+eiyne+++DlL
   CDO72072.1 512 RSKGWQYKMEGQFLEIYNETINDLL 536
                  ************************8 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   4.7       0.6   6.7e+02      38      77 ..     141     180 ..     134     199 .. 0.45
   2 ?    4.7  10.6     0.041        46      15      89 ..     164     238 ..     152     241 .. 0.88
   3 !   18.1   9.8   2.8e-06    0.0032      22      98 ..     203     282 ..     201     283 .. 0.86
   4 ?   -0.4   0.2       1.5   1.7e+03      11      66 ..     297     330 ..     284     337 .. 0.45

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.6
  HIP1_clath_bdg  38 rlkeeaerkleeqkeelekLkreleakraelarlkssLes 77 
                     +++++  r ++ ++    +L +el+++ra+ + l++s e 
      CDO72072.1 141 SIQQQIARIEAARAADAARLDAELAQERAKRSDLQASHEA 180
                     4455555555555555555555555444444444433222 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.041
  HIP1_clath_bdg  15 lsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssql 89 
                     l + r++++++++  + l++el ++k ++  + +e     ++L++  ++++ e+++l++ L+++ ++  +l++ l
      CDO72072.1 164 LAQERAKRSDLQASHEALSRELTNAKTQEIAQRQELFIASDELNNLRQRHEREISELQADLRRKDRELRELNEDL 238
                     5678999****************************9999999999999999***********9999999888776 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 2.8e-06
  HIP1_clath_bdg  22 qeeverekkeleeelerlkeeaerkleeqkeelekL...kreleakraelarlkssLesseqsgeqlssqlaaLqaEkes 98 
                      +e+++ +++ e+e+ +l+++ +rk +e +e  e L   +++le++r+ +++lk++++++++s+  l++ql aLqaEk++
      CDO72072.1 203 SDELNNLRQRHEREISELQADLRRKDRELRELNEDLricQADLERERDTVKSLKATIAQQATSQLSLTAQLGALQAEKAA 282
                     58999999*******99999988887766665555522379*************************************85 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.5
  HIP1_clath_bdg  11 vtkqlsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakra 66 
                     ++ ql  a +   ++ere                      + e e+++r l++  +
      CDO72072.1 297 LAIQLERAHKRIADLERE----------------------AREGESVRRKLHNMVQ 330
                     333333333333333333......................3333333333333333 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         6   6.7e+03      49      67 ..      17      35 ..      14      37 .. 0.69
   2 ?   -0.0   1.8      0.79   8.9e+02      37      67 ..     159     189 ..     144     196 .. 0.77
   3 ?   -1.1   3.1       1.7   1.9e+03      38      67 ..     160     189 ..     155     216 .. 0.67
   4 ?   15.4   5.0   1.3e-05     0.014       1      72 [.     218     289 ..     218     290 .. 0.94
   5 ?   -0.6   0.2       1.3   1.4e+03      49      67 ..     301     319 ..     294     334 .. 0.56
   6 ?   -3.4   0.0       9.1     1e+04      14      21 ..     661     668 ..     643     677 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6
  TMF_DNA_bd 49 ikelkkkleklekeleele 67
                 ++lk+k +++e   +el+
  CDO72072.1 17 TNSLKRKAATQENIGAELQ 35
                5677888888877666666 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.79
  TMF_DNA_bd  37 kLrkknkelekeikelkkkleklekeleele 67 
                 +L++++++   + ++l+   e l++el++ +
  CDO72072.1 159 RLDAELAQERAKRSDLQASHEALSRELTNAK 189
                 5777888888888888888888888887766 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.7
  TMF_DNA_bd  38 Lrkknkelekeikelkkkleklekeleele 67 
                 L++++++   + ++l+   e l++el++ +
  CDO72072.1 160 LDAELAQERAKRSDLQASHEALSRELTNAK 189
                 555556666666666666666666665554 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.3e-05
  TMF_DNA_bd   1 sslekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72 
                 s+l+++l+ KD ++ +L e +   ++   +++ t+k+L+++++++ +++ +l+ +l  l+ e +  ++++++
  CDO72072.1 218 SELQADLRRKDRELRELNEDLRICQADLERERDTVKSLKATIAQQATSQLSLTAQLGALQAEKAAVQAEFDR 289
                 5899****************************************************9999999998888765 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.3
  TMF_DNA_bd  49 ikelkkkleklekeleele 67 
                 +++  k++++le+e  e e
  CDO72072.1 301 LERAHKRIADLEREAREGE 319
                 4445555555555544444 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 9.1
  TMF_DNA_bd  14 IaqLmeEG 21 
                 Ia+L e G
  CDO72072.1 661 IAALGEKG 668
                 44444444 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  21.1   0.00011      0.13      45     223 ..     160     324 ..     131     351 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikd 143
                 l ael + +++r  l+++ ++l+ ++ + +t+    e  q +e   + ++l++l+++ e e     e++a+l+r+++elr l+e+l+     +q+ +++
  CDO72072.1 160 LDAELAQERAKRSDLQASHEALSRELTNAKTQ----EIAQRQELFIASDELNNLRQRHERE---ISELQADLRRKDRELRELNEDLR----ICQADLER 247
                 22333333333333333333333333333333....4444445555555555555544422...23355666666666666666666....44444444 PP

   Golgin_A5 144 rekeieklrnqlttkslsssseselesRlkqLtesLiqKQtvlEalsteknslvlQLeRleqqikevqseaengtalnle 223
                   + +++l++ ++   ++ +s+  l + l +L     + Q+  +     k  l++QLeR+ + i +++ ea++g++++ +
  CDO72072.1 248 ERDTVKSLKATIA---QQATSQLSLTAQLGALQAEKAAVQAEFDRTCGTKADLAIQLERAHKRIADLEREAREGESVRRK 324
                 4455666666665...556678899********************************************99876655432 PP

>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00035      0.39     138     176 ..     208     246 ..     203     257 .. 0.89
   2 ?   -1.3   0.0       1.9   2.1e+03      39      62 ..     393     416 ..     390     445 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
         XLF 138 qasaelkrqveeLieilkeKDavIskLldklessGadls 176
                 ++ + ++r++ eL + l++KD++++ L+++l++  adl+
  CDO72072.1 208 NLRQRHEREISELQADLRRKDRELRELNEDLRICQADLE 246
                 5667899**************************999997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
         XLF  39 eldrdeilkrakeentsidpsede 62 
                 ++d++ei+ ra++e+++ +  +de
  CDO72072.1 393 KMDHREIVLRASSESATGQERKDE 416
                 7999********999865544444 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.8    0.0013       1.5     180     296 ..     166     284 ..     119     288 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
       FAM76 180 kkrssrlevskle.eek....laeekesnetskksldsnssdhlvavtqLke.eiaslkkqleqkdqellekdkkitelkaellekekelreklkelek 272
                 ++   r + s+l+ +++      ++++++e ++++     sd+l ++ q +e ei +l+  l++kd el e +  +   +a+l++++ ++ + lk++ +
  CDO72072.1 166 QE---RAKRSDLQaSHEalsrELTNAKTQEIAQRQELFIASDELNNLRQRHErEISELQADLRRKDRELRELNEDLRICQADLERERDTV-KSLKATIA 260
                 22...2222222211111121222223333333456677899999999998757***************************998766665.56788888 PP

       FAM76 273 eakekieklekkirellkevaels 296
                 +  +++ +l+++  +l+ e+a+++
  CDO72072.1 261 QQATSQLSLTAQLGALQAEKAAVQ 284
                 88888999***********99986 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.9    0.0006      0.67      26     119 ..     182     282 ..     169     289 .. 0.82
   2 ?    2.3   0.3       0.1   1.1e+02      57      93 ..     297     333 ..     293     339 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0006
                 HHHHHH.HHHHHHHHHHHHH..HHHHHHH..HHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH CS
        SHE3  26 sqeLle.klelaqkkeskfl..enlaslk..hENd..nLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqY 117
                 s+eL++ k +  +++++ f+  ++l++l+  hE +   L++ L+RK+r l++l+++l   +   e  +   k lk  + ++  s+ +l+++l  l+++ 
  CDO72072.1 182 SRELTNaKTQEIAQRQELFIasDELNNLRqrHEREisELQADLRRKDRELRELNEDLRICQADLERERDTVKSLKATIAQQATSQLSLTAQLGALQAEK 280
                 4455433667777888888766789999544777644699*******************************************************9976 PP

                 HH CS
        SHE3 118 da 119
                  a
  CDO72072.1 281 AA 282
                 55 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  57 LsslLkRKerrlkdlekelselkesveelklekkqlk 93 
                 L   L+R  +r+ dle+e  e ++   +l+   ++lk
  CDO72072.1 297 LAIQLERAHKRIADLEREAREGESVRRKLHNMVQELK 333
                 56679*************9998776666666555555 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   3.4      0.13   1.4e+02      82     132 ..     157     207 ..     137     211 .. 0.81
   2 ?   11.8  14.3   0.00017      0.19      13     134 ..     211     331 ..     203     337 .. 0.85
   3 ?   -2.8   0.0       5.3   5.9e+03      99     121 ..     525     547 ..     514     553 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.13
  CENP-F_leu_zip  82 keeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLq 132
                        L+ el +++ + s+L+++++ l++ l ++  +++  ++e   a +eL+
      CDO72072.1 157 AARLDAELAQERAKRSDLQASHEALSRELTNAKTQEIAQRQELFIASDELN 207
                     567999999999999999999999999999999888888888888877775 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00017
  CENP-F_leu_zip  13 KeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnssle 107
                     ++ er+ + L+    + +rel +++e++     + E ++ +v++lk+ i + a++   l+++L al+ ek  ++ e      +  +L    +  +
      CDO72072.1 211 QRHEREISELQADLRRKDRELRELNEDLRICQADLERERDTVKSLKATIAQQATSQLSLTAQLGALQAEKAAVQAEFDRTCGTKADLAIQLERAH 305
                     46799999999999*****************************************************************9999999999999999 PP

  CENP-F_leu_zip 108 nlleekEqekvqmkeeskaaveeLqtq 134
                     + + ++E e ++  e+  ++++ + ++
      CDO72072.1 306 KRIADLEREAREG-ESVRRKLHNMVQE 331
                     9999999995543.3333333333333 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.3
  CENP-F_leu_zip  99 LeslnsslenlleekEqekvqmk 121
                     Le  n++++ ll + E +k++ +
      CDO72072.1 525 LEIYNETINDLLGKGEFDKKKHE 547
                     89999999999999999977654 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   9.8     0.031        35     392     471 ..     138     223 ..       3     233 .. 0.62
   2 ?    7.6   8.9    0.0011       1.2     395     489 ..     227     325 ..     219     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.031
    Macoilin 392 l..skkdalvrLe....adikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqql 471
                    s ++++ r+e    ad ++L aeL+++r + ++l+   ++l+ e  ++k++  ++++e       l++l + + ++  +lq  
  CDO72072.1 138 RfdSIQQQIARIEaaraADAARLDAELAQERAKRSDLQASHEALSRELTNAKTQEIAQRQELFIASDELNNLRQRHEREISELQAD 223
                 1334455566777333358999****************999999999999999999999998888888888777666666555543 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
    Macoilin 395 kd.alvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekrLke.ekeara..slekqL 489
                 kd +l  L++d++  +a+L+ +r t + l+  i   ++++ sl ++l++l+ e+  +q+ ++    +k     +l++  kr+ + e+ear   s+ ++L
  CDO72072.1 227 KDrELRELNEDLRICQADLERERDTVKSLKATIAQQATSQLSLTAQLGALQAEKAAVQAEFDRTCGTKADLAIQLERAHKRIADlEREAREgeSVRRKL 325
                 44145579*****************************************************99999998888888888887654355555311444444 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.1   3.5e+03      69      81 ..      15      27 ..      12      44 .. 0.76
   2 ?    6.6   5.8    0.0086       9.7      29      81 ..     203     262 ..     181     266 .. 0.61
   3 ?    5.4   0.5      0.02        23      26      80 ..     263     317 ..     256     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.1
        KxDL 69 kkirslkaklakk 81
                 +++slk+k+a++
  CDO72072.1 15 TRTNSLKRKAATQ 27
                6778888888776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0086
        KxDL  29 nreLlelnalsqerlaklrarfkqgtkllkevkkdLesif.......kkirslkaklakk 81 
                 + eL +l++  +++ ++l+a+++++ + l+e+++dL+ ++        +++slka++a++
  CDO72072.1 203 SDELNNLRQRHEREISELQADLRRKDRELRELNEDLRICQadlererDTVKSLKATIAQQ 262
                 456666666666666666666666666666666555554411111116677777777765 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.02
        KxDL  26 nkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklak 80 
                   ++  L+++   +q++ a ++a+f +   +  ++  +Le  +k+i  l++++++
  CDO72072.1 263 ATSQLSLTAQLGALQAEKAAVQAEFDRTCGTKADLAIQLERAHKRIADLEREARE 317
                 556778888888999999********************************99875 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  20.0   0.00074      0.83     139     253 ..     141     262 ..     137     268 .. 0.85
   2 ?    1.6   4.0     0.092     1e+02     198     262 ..     270     334 ..     253     337 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00074
        Spc7 139 gLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe...aaeeles.....idkeeLeelre....elaelkaeieekkkelael 225
                 ++++++ ++ ++  +d+++L+++ ++  +   +l++ +++l++el++ ++   a     +     i ++eL++lr+    e++el+a++++k +el el
  CDO72072.1 141 SIQQQIARIEAARAADAARLDAELAQERAKRSDLQASHEALSRELTNAKTqeiA-----QrqelfIASDELNNLRQrherEISELQADLRRKDRELREL 234
                 677777788888889********************************9994332.....3335669999***9997444469999************** PP

        Spc7 226 qeqleeleekieelkeqkseleeeiaea 253
                 +e+l   ++++e  ++  ++l++ ia++
  CDO72072.1 235 NEDLRICQADLERERDTVKSLKATIAQQ 262
                 ***********99999999999999986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.092
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                  ++L +l+ e a+++ae ++     a+l  qle+  ++i++l+ + +e e+  ++  ++++e kg
  CDO72072.1 270 TAQLGALQAEKAAVQAEFDRTCGTKADLAIQLERAHKRIADLEREAREGESVRRKLHNMVQELKG 334
                 66788888888888888888888888888888888888888888888887777777777777665 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  30.0      0.04        45      16     182 ..     167     332 ..     147     337 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.04
  Lebercilin  16 LqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkkLsedk 114
                  + + ++lq   e+l++E+   k++   q ++L     +  eL +l +rh+ E+  l+++lR++  + rel+++l+  +a+l+r +d++k lk+   ++
  CDO72072.1 167 ERAKRSDLQASHEALSRELTNAKTQEIAQRQEL---FIASDELNNLRQRHEREISELQADLRRKDRELRELNEDLRICQADLERERDTVKSLKATI-AQ 261
                 455667888889999999999899888888888...345668889999**********************************************66.56 PP

  Lebercilin 115 nLaereeLqkkLeeleakleekeekike...Lerkleleeksfrrqlaaekkktkeaqeevkalqeeierl 182
                 +   +  L+ +L +l+a+  + + ++++    +  l  + +  ++++a  ++ ++e ++  ++l++ +++l
  CDO72072.1 262 QATSQLSLTAQLGALQAEKAAVQAEFDRtcgTKADLAIQLERAHKRIADLEREAREGESVRRKLHNMVQEL 332
                 77789999999998887765555444321113344444444444444444444455555555555555554 PP

>> T2SSN  Type II secretion system (T2SS), protein N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.7   0.00044       0.5     106     198 ..     205     303 ..     143     313 .. 0.73
   2 ?   -2.5   0.2       4.4     5e+03     118     174 ..     581     636 ..     561     668 .. 0.42

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
       T2SSN 106 e...lrfgrg.gcqalqGtlnwrnaevsslsgslplgdlraelsce...ggqltltlsdqs.gpLslegqgslnaagtyrvagtlkptaeappaLaqaL 196
                 e   lr++++ ++ +lq+ l+ ++ e+ +l+++l     +a+l+ e     +l++t+++q+ ++Lsl++q+   +a++  v++++  t +++++La +L
  CDO72072.1 205 ElnnLRQRHErEISELQADLRRKDRELRELNEDLR--ICQADLERErdtVKSLKATIAQQAtSQLSLTAQLGALQAEKAAVQAEFDRTCGTKADLAIQL 301
                 245599*********************99999666..556666655558899******9999********99999999*****************9999 PP

       T2SSN 197 sl 198
                 + 
  CDO72072.1 302 ER 303
                 75 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.4
       T2SSN 118 qGtlnwrnaevsslsgslplgdlraelsceggqltltlsdqs.gpLslegqgslnaag 174
                 qG+ +++++ +++ s  ++   ++++++  +++lt +  + s + ++l g+ +l + g
  CDO72072.1 581 QGRRTVAATLMNERSS-RSHSVFTLRIRG-ENALTGESCEGSlNLVDLAGSERLEKSG 636
                 4444444444422222.222334444442.2222222222222333333333333333 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  26.4     0.012        14     239     424 ..     138     332 ..     132     338 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.012
     DUF3584 239 aiekvrpeieklqe...efeq.leslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealee 333
                 ++ +++++i+++++   ++++ l   +++ +    +l+a  e+l++++++ ++++ + +q+l    del++ +++ + e+s+++a+l +k +el +l+e
  CDO72072.1 138 RFDSIQQQIARIEAaraADAArLDAELAQERAKRSDLQASHEALSRELTNAKTQEIAQRQELFIASDELNNLRQRHEREISELQADLRRKDRELRELNE 236
                 455555555555541113333033333444556678999999999999999999999999999999999999999999999999999999999999999 PP

     DUF3584 334 qkkkyedadieklkadldqlpsirsele....eleeeldaltekhqdvqekydrrkqkikeeleeeleklker.leaireekdrl..kaaieealeal 424
                 + +   +ad+e+ +     l ++ ++ +     l ++l al  +  +vq+++dr     k +l+ +le+ ++r ++  re+++    + + ++ +++l
  CDO72072.1 237 DLRIC-QADLERERDTVKSLKATIAQQAtsqlSLTAQLGALQAEKAAVQAEFDRTCG-TKADLAIQLERAHKRiADLEREAREGEsvRRKLHNMVQEL 332
                 99876.577777776666665544333301113457788888888899999998654.6788888888888886777777776633344444444444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  23.4      0.27   3.1e+02      15     127 ..     143     260 ..     134     267 .. 0.62
   2 ?   10.0   6.4   0.00086      0.97      20     108 ..     244     325 ..     241     336 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.27
      APG6_N  15 dkqleqaekerda.YeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne.lqle 111
                 ++q+++ e+ r a   +  ++l +e+ + ++ + ++e+l +el + + +e +  +eL  + +e  +l++  +   +el+a  + ++r++re ne l++ 
  CDO72072.1 143 QQQIARIEAARAAdAARLDAELAQERAKRSDLQASHEALSRELTNAKTQEIAQRQELFIASDELNNLRQRHEREISELQADLRRKDRELRELNEdLRIC 241
                 555555555554313445567777766666689999*******************99666666555555555555555555555555555555555555 PP

      APG6_N 112 lleleeeld...sleaqye 127
                 +++le e+d   sl+a ++
  CDO72072.1 242 QADLERERDtvkSLKATIA 260
                 5555555550005555554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00086
      APG6_N  20 qaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynel 108
                 ++e+erd+ ++  +++ +++++         +l  +l +l++e+++ ++e +++  ++++l+ +l+ +++  ++le+e ++  + +++l
  CDO72072.1 244 DLERERDTVKSLKATIAQQATS-------QLSLTAQLGALQAEKAAVQAEFDRTCGTKADLAIQLERAHKRIADLEREAREGESVRRKL 325
                 5677777777777777777444.......346777777777777777777777777777777777777777777777766554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1508  (0.0841095); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.48
# Mc/sec: 4667.69
//
Query:       CDO72073.1  [L=633]
Description: hypothetical protein BN946_scf184962.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-11   41.8   0.1    2.1e-10   40.5   0.1    1.7  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
    1.8e-08   34.3   3.9    9.2e-06   25.7   0.6    2.5  2  zf-GRF           GRF zinc finger
  ------ inclusion threshold ------
      0.014   15.2   0.0       0.39   10.6   0.0    2.3  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   3.5e-14   2.1e-10       1     233 []       4     298 ..       4     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.5e-14
                    EEEEESTG...............CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH................. CS
                    xxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
  Exo_endo_phos   1 ltwNvngq...............aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsp................. 64 
                    l+wN+ng                +            ++d+l   +aD++++QE++ + + +    +  g+f+ + s +                  
     CDO72073.1   4 LSWNINGIrtlpkyhpwntfkscEG-----------ILDEL---KADIICFQELKSSRALISRDVATPGHFDAFLSFPVakggysgvgvftdsrta 85 
                    79*****655554444433221111...........33333...55*******7777665554444334444444444466666666666666788 PP

                    ..............................................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEE CS
                    ..............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 ..............................................tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqln 114
                                                                  t +    g+g a++  f l+ l                         +++
     CDO72073.1  86 vplkaeeglsgrlqpqpslsaeecispsyplpedivaypdekgevpTSFDDLDGEGRALVLDFGLFVL------------------------INVY 157
                    88999999999999999999999999999999999999999999999999999999999999999888........................2222 PP

                    E..CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH.....................H.......... CS
                    x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................x.......... RF
  Exo_endo_phos 115 i..ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap.....................v.......... 177
                    +  +++    +  +  +l l+ +v     ++++ v+v+GD N+  +  d  +                                            
     CDO72073.1 158 CpnETSDARLSFKMNYHLMLQERVRKVIEEEHREVVVVGDINVCATPLDHCD-----------GhlpshqatfydhparawfhnwLsprgpmidvv 242
                    255667777777778899999999999****************444444444...........133444445666777776665505566667778 PP

                    .......SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 178 .......glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                            + +++++ +  ++  ++g r+D+il++++l ++ +   + p        l++SDH
     CDO72073.1 243 refwpdrKGLYTCWNMRIQARETNYGTRVDYILVTKGLLPWIQHGDILPS-------LKGSDH 298
                    88999*******************************88888887777775.......799**9 PP

>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.6   1.5e-09   9.2e-06       2      31 ..     556     586 ..     555     591 .. 0.91
   2 !    9.3   0.1    0.0002       1.2      34      44 ..     607     617 ..     600     618 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.5e-09
      zf-GRF   2 lCk.cgrlavlltvrktgpNkGRkFYkCpkg 31 
                  C  +g++ ++ tv+k gpNkG+ F+ C+ +
  CDO72073.1 556 NCYvHGEPTKMYTVNKPGPNKGKTFFLCSRP 586
                 688899**********************976 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0002
      zf-GRF  34 kqCgFFkWade 44 
                   C+FFkW  e
  CDO72073.1 607 YRCNFFKWTSE 617
                 47******865 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.4e-05      0.39       2      41 ..     152     200 ..     151     218 .. 0.89
   2 ?    2.1   0.0     0.027   1.6e+02      80     119 .]     261     302 ..     246     302 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.4e-05
  Exo_endo_phos_2   2 liisvYippsd..........elenlestlekllselkspkiiilGDfNa 41 
                       +i+vY+p+++              l++ ++k+++e ++ +++++GD+N+
       CDO72073.1 152 VLINVYCPNETsdarlsfkmnYHLMLQERVRKVIEEEHR-EVVVVGDINV 200
                      579**************998777789999********97.9********7 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.027
  Exo_endo_phos_2  80 tfkssngsstiDltltsdnlals..kleleeedlgSDHrpil 119
                      + +++n+ + +D +l+++ l+    + ++ +   gSDH pi+
       CDO72073.1 261 QARETNYGTRVDYILVTKGLLPWiqHGDILPSLKGSDHCPIY 302
                      4455667889999999999999877778888899*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 4920.60
//
Query:       CDO72074.1  [L=127]
Description: hypothetical protein BN946_scf184962.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-10   39.9   5.7    5.5e-10   39.3   5.7    1.3  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0032   17.8   0.2     0.0054   17.0   0.2    1.4  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.059   14.2   1.3      0.059   14.2   1.3    1.9  2  zf-C2H2_4    C2H2-type zinc finger
      0.073   13.3   0.1        0.1   12.8   0.1    1.2  1  UPAR_LY6_2   Ly6/PLAUR domain-containing protein 6, Lypd6
       0.17   12.3   3.6       0.32   11.4   3.6    1.5  1  zf-met       Zinc-finger of C2H2 type


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   5.7   1.5e-13   5.5e-10       1      27 []      59      85 ..      59      85 .. 0.99

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.5e-13
                 ECBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  1 qfYCvlCdKyFksenaldnHlkSKkHK 27
                 q+YCv+C+KyF++++al+ H+kSK HK
   CDO72074.1 59 QHYCVECAKYFETDHALRSHWKSKVHK 85
                 8*************************9 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.5e-06    0.0054      48      81 ..      58      90 ..      37     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
   zf-C2H2_2 48 eekleClyCekefkslealreHmkkkgHckinee 81
                 + + C+ C k f++ +alr+H k+k H++  + 
  CDO72074.1 58 AQ-HYCVECAKYFETDHALRSHWKSKVHKRRCKA 90
                44.99************************97554 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4         5   1.8e+04      21      24 .]       8      11 ..       5      11 .. 0.76
   2 ?   14.2   1.3   1.6e-05     0.059       1      22 [.      60      81 ..      60      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5
   zf-C2H2_4 21 kthH 24
                +thH
  CDO72074.1  8 RTHH 11
                7888 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.6e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkt 22
                ++C  C k F + +aL++H+k+
  CDO72074.1 60 HYCVECAKYFETDHALRSHWKS 81
                68******************97 PP

>> UPAR_LY6_2  Ly6/PLAUR domain-containing protein 6, Lypd6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.9e-05       0.1      28      62 ..      59      93 ..      49     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
  UPAR_LY6_2 28 dvycpretkycltvhllesegksvsvtkrcatlee 62
                 +yc + +ky  t h l+s+ ks+  ++rc +l e
  CDO72074.1 59 QHYCVECAKYFETDHALRSHWKSKVHKRRCKALRE 93
                57****************************98766 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.6     9e-05      0.32       2      25 .]      61      84 ..      60      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9e-05
      zf-met  2 yCelCnvtfnsesqlksHlqGKkH 25
                yC  C ++f    +l+sH ++K+H
  CDO72074.1 61 YCVECAKYFETDHALRSHWKSKVH 84
                9*********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1065.63
//
Query:       CDO72075.1  [L=146]
Description: hypothetical protein BN946_scf184962.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1070.18
//
Query:       CDO72076.1  [L=989]
Description: hypothetical protein BN946_scf184962.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.59
# Mc/sec: 5029.77
//
Query:       CDO72077.1  [L=759]
Description: hypothetical protein BN946_scf184962.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-105  352.0   2.8     6e-105  351.7   2.8    1.0  1  Anoctamin  Calcium-activated chloride channel


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.7   2.8  3.3e-109    6e-105       1     438 [.     169     688 ..     169     700 .. 0.86

  Alignments for each domain:
  == domain 1  score: 351.7 bits;  conditional E-value: 3.3e-109
   Anoctamin   1 IrdyFGekiAlYFawlgfytsallppavlGlllflyglatitlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelkr 99 
                 Ir++FGe +AlYF +l+fyt+ ll+++++G+l++++        + +++ +++ ++ +W+++f+e+W+ +++ l+++Wgt++  ++e++r+++      
  CDO72077.1 169 IREQFGEAVALYFHFLSFYTKHLLFISLVGVLFYFF--------SLPYSTWYSSILLLWSITFVEWWRIKQRILSVRWGTKGSFRVEKRRAQYV----- 254
                 8*******************************9997........45799*******************************98888998899998..... PP

   Anoctamin 100 espvtgeeefyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvke.....llsflptvlnlvlililnevykklaiwltdlEnhrtq 193
                    +        p+wk+ l+ +l+slp++l  +++ v++v+++++++++++v+++++     ++ f+pt+l + l++ l  +y++ a++lt++Enh +q
  CDO72077.1 255 ---P-------LPWWKKDLR-MLASLPVIL--FFASVLAVILTAIFIFEAFVTQLYTgpghrFIGFSPTILFVALVPRLLAIYHSYAVRLTNWENHGHQ 340
                 ...2.......59***6655.********5..4568888999998999********976554444********************************** PP

   Anoctamin 194 seyekslilKvflfqfvnsylslfyiaFvkgkflkypgkylr.....................................................rsee 239
                 s+++ sl++K+f ++++ +yl + + aFv+++f +++++ ++                                                     +s +
  CDO72077.1 341 STHDASLTIKTFSLSAIVAYLGIALSAFVYVPFGEEVMAAVQhylfyrdtpfhttartwlssvysalpsnvtapfnatgdaqkagassnrtfwerDSGS 439
                 **********************************99999999***************************************************855556 PP

   Anoctamin 240 cdeegcleelkeqLaiilvtkqllnnilevllPylkeklkk...............................kkk....esekdekeeeeskkltqaek 303
                  + + + ++l+ q+++++vt+q++n++le++lP+  + + +                               + +    e ++  ++eee+++l+++++
  CDO72077.1 440 ARGKLSSTRLQDQMFAFTVTNQVINTFLEIGLPFATRAVASvrsgkglslaapaaganggngngkkkrvmfeD-QsaeaEAQRLADQEEEREFLDRVKR 537
                 6666677**************************9844433355566666666666666666666555555541.156668889999999********** PP

   Anoctamin 304 eyelkkyedlfddYlemviqfGyvtlFsaafPlapllallnniieirldafklvtelrRpvperaesiGiWqkilealgvlavitnallialtsdp... 399
                 e  l++y+ lf dY emv qfGyvtl+s+++Plap++ llnn++e+r+dafk+  ++rRp+p r+++iG+W+++l++l++l+ +tn++l+ l+  p   
  CDO72077.1 538 EVALPDYD-LFADYSEMVTQFGYVTLWSTIWPLAPVMSLLNNWLELRSDAFKISVHVRRPIPTRTDTIGPWLDALTFLTWLGALTNSALVYLFR-Prdh 634
                 *******6.99*******************************************************************************6555.2345 PP

   Anoctamin 400 ................ek.dteqylsvlaarlafvvvlehvvlllkyliavlipdi 438
                                 ++  + q+   l+  l++ +++ h +++l++li+++++ +
  CDO72077.1 635 ckplgtslshshhhlsNPnAPAQQ--YLMSALLIALAASHGYIILRMLIRHTLERV 688
                 667777777777666533344444..444444445558************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4949.78
//
Query:       CDO72078.1  [L=832]
Description: hypothetical protein BN946_scf184962.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-34  116.3   0.1    1.4e-33  115.7   0.1    1.3  1  VHS        VHS domain
    7.4e-15   54.3   0.0    1.3e-14   53.5   0.0    1.4  1  SH3_1      SH3 domain
    2.4e-14   52.7   0.1    4.9e-14   51.8   0.1    1.6  1  SH3_2      Variant SH3 domain
    3.7e-14   52.3   0.1    7.5e-14   51.3   0.1    1.6  1  SH3_9      Variant SH3 domain
    2.5e-13   50.1   0.8    5.4e-13   49.1   0.8    1.6  1  GAT        GAT domain
     0.0078   16.1   5.2      0.018   14.9   5.2    1.6  1  UIM        Ubiquitin interaction motif
  ------ inclusion threshold ------
       0.11   11.7   0.2       0.19   11.0   0.2    1.2  1  IKBKB_SDD  IQBAL scaffold dimerization domain


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.1   5.6e-37   1.4e-33       4     141 .]       7     143 ..       4     143 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 5.6e-37
                 HHHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCS.TCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTC CS
         VHS   4 asslekliekATdeslreedlslileicDlinek.eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekkns 101
                 a+++++++ k Tde l+ e+++lil++cD ++e+ e+g++ ++ +  k++ ++np+v+l++L+l++al kNcG ++h eias+ f++ l kl++ +  +
  CDO72078.1   7 ANNYDEVVAKTTDENLTGENWELILNLCDKVQEEgEQGARGVIAAALKRLAHRNPNVQLYTLTLVEALSKNCGVEVHREIASRAFTQGLEKLVTDRTTH 105
                 677999****************************999************************************************************** PP

                 HCS.HHHHHHHHHHHHHHHTTT-TTGHHHHHHHHHHHHTT CS
         VHS 102 klakvkkkvlelleeWadafknkpelkkisdvykllkrkg 141
                 ++  v+k+vl+l+  W+ +f+++p l  +++ y++lk +g
  CDO72078.1 106 DK--VRKRVLNLVAVWTAEFEKDPTLGLMEECYENLKARG 143
                 96..*********************************987 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   5.1e-18   1.3e-14       1      48 []     285     330 ..     285     330 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 5.1e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +Al+ ++++e++EL f+kGD+i+v++++ ++Ww+g+lk  g++G++P+
  CDO72078.1 285 RALHTFTPTEPGELAFEKGDIIKVVDRNYKDWWRGQLK--GRTGIFPV 330
                 79************************************..69*****5 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   1.9e-17   4.9e-14       1      56 [.     283     335 ..     283     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.9e-17
                 EEEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   1 yvraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                 +vra+ +++++ ++eL f+kGd+ikv+   +++  +ww+g+ +Gr G+fP ++ve+
  CDO72078.1 283 RVRALHTFTPTEPGELAFEKGDIIKVV---DRNYKDWWRGQLKGRTGIFPVNYVEP 335
                 69*************************...99999*******************98 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   2.9e-17   7.5e-14       1      49 []     286     334 ..     286     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.9e-17
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 Al+ ++p+e+ eL +++GD+i v ++   +W++g+l+GrtG +P+nyve
  CDO72078.1 286 ALHTFTPTEPGELAFEKGDIIKVVDRNYKDWWRGQLKGRTGIFPVNYVE 334
                 899*********************9989********************7 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.8   2.1e-16   5.4e-13       3      76 ..     360     431 ..     358     432 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.1e-16
         GAT   3 naklLsemLsstepd.eellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlkk 76 
                 n++ L  mL +++p  ++l++ne ++eLy++c +++p+i+kli++++++    a+l ++N+ + ++ + ++r+++
  CDO72078.1 360 NVDRLLTMLRNMDPArDNLADNEEIQELYRSCMTLRPKIVKLIDKYSQKR---ADLVSMNETFVKARTIFDRMME 431
                 999*********98889*******************************99...6******************987 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   5.2   7.1e-06     0.018       2      16 ..     165     179 ..     164     179 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.1e-06
         UIM   2 EdedLqrAlalSlqE 16 
                 E+e+LqrAl+ S+q+
  CDO72078.1 165 EEEELQRALEISMQD 179
                 9*************8 PP

>> IKBKB_SDD  IQBAL scaffold dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   7.5e-05      0.19     119     194 ..     361     437 ..     344     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.5e-05
   IKBKB_SDD 119 sekllkaWkemeekaeqcgqeeevkkLdeeimalqteivelqrsPlar.rqgevledleekaielykkLrekpkkdq 194
                  ++ll+  ++m+ + ++ + +ee+++L  + m+l+ +iv l  +  ++      +++   ka+ ++ ++ e++  ++
  CDO72078.1 361 VDRLLTMLRNMDPARDNLADNEEIQELYRSCMTLRPKIVKLIDKYSQKrADLVSMNETFVKARTIFDRMMEESLARH 437
                 58999***********************************97665555145667999999******99999887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 5190.16
//
Query:       CDO72079.1  [L=138]
Description: hypothetical protein BN946_scf184962.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-17   61.8   0.0    5.6e-17   61.7   0.0    1.0  1  UQ_con    Ubiquitin-conjugating enzyme
     0.0035   17.6   0.0     0.0037   17.5   0.0    1.2  1  RWD       RWD domain
  ------ inclusion threshold ------
       0.11   12.3   0.1       0.14   12.1   0.1    1.2  1  UEV       UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   9.4e-21   5.6e-17      20     111 ..      29     124 ..       9     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 9.4e-21
                 EEEE..TTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-...CGGGSTTT--TTSHHHHHHHHHHHHHHS- CS
      UQ_con  20 klvd..denlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevc...ldiLkeekWspaltlesvllsiqsLlaep 111
                 +l+d  d  + +w+++i+gp +t+ e+ ++ l+++  e+YP +pP+v+f++++  P v+  +G+v    l +L   +W++  ++e+vl++i   +a+ 
  CDO72079.1  29 GLEDsdDIMMSHWNGTIIGPGHTVHENRIYSLKITCGENYPDQPPTVQFISRVNLPFVSqVDGKVDpnkLPVLA--HWNRNNSIETVLVEIRREMASF 124
                 444422467889***********************************************99****744488999..7************998766555 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.2e-07    0.0037      46      81 ..      40      84 ..       6     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.2e-07
                ............TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS- CS
                x.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 46 e.........feekkkpslkleiklpeeYPeeaPiislsstenlp 81
                +         ++  ++  ++l+i++ e+YP+++P +++ s  nlp
  CDO72079.1 40 HwngtiigpgHTVHENRIYSLKITCGENYPDQPPTVQFISRVNLP 84
                36666666667777888899***************9998877554 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.3e-05      0.14      54     120 ..      62     130 ..      28     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
                 EE--TTTTTS--EE.EE-GCC--TSGGGG.GB-TTSBB--HHHHS--TTT--...HHHHHHHHHH-----XX CS
         UEV  54 iwvlesyPveaPiv.yvkptksmvikkne.nvdaqGlvylpyLeeWkreksn...lvslvqelaqafeeesP 120
                 i   e+yP ++P+v +++  +   + +   +vd +   +lp+L +W+r++s    lv++ +e+a+  +++ P
  CDO72079.1  62 ITCGENYPDQPPTVqFISRVNLPFVSQVDgKVDPN---KLPVLAHWNRNNSIetvLVEIRREMASFNNRKLP 130
                 556799******98345554444555544577777...89********776545566666777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1065.67
//
Query:       CDO72080.1  [L=517]
Description: hypothetical protein BN946_scf184962.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-76  258.0  19.4    1.9e-76  257.8  19.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.6e-32  111.3  31.4    2.2e-31  109.1  22.6    2.0  2  MFS_1     Major Facilitator Superfamily
    4.7e-10   38.5  12.0      2e-08   33.1   1.2    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)
    1.6e-06   27.6  14.3    4.5e-06   26.2   3.6    2.3  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.018   15.2  16.0      0.047   13.9   3.0    3.2  2  DUF3792   Protein of unknown function (DUF3792)
       0.29    9.4  13.0       0.06   11.6   0.8    2.7  3  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.8  19.4   6.4e-80   1.9e-76       2     452 .]      52     498 ..      51     498 .. 0.93

  Alignments for each domain:
  == domain 1  score: 257.8 bits;  conditional E-value: 6.4e-80
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                  ++a+l++  +g+d  + g+ +++  f++ fg + +++         gl+++++++G ++G+lfag+++d++G + +++ ++++++igav+qa+a    
  CDO72080.1  52 LFIAYLCSATNGFDANTFGGLSAIDTFVSYFGITPENQ---------GLVAALYVIGNVAGCLFAGPCADKYGSRVGMASGSFICIIGAVMQATAR--- 138
                 589********************************996.........89***********************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn..adgwrillglqlvpallllilllflPESPry 197
                 ++  l+ gR+++G+g+ l+++  P y+ E+A +k+Rg l++ yq++  +G +v++++ +gln +++  +++wr++l++q++p++l+l++++f+PE+Pr+
  CDO72080.1 139 NLSTLMGGRFILGLGAVLVQTAGPAYVVEMAYPKYRGLLTGAYQTCFFLGTIVSTWLEYGLNFVTEtpQWTWRLPLAIQALPSVLVLAFVWFIPETPRW 237
                 9***************************************************************999******************************** PP

                 HHHTT-HHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH.........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH. CS
    Sugar_tr 198 lvekgkeeeakevlaklrge..edadrelaeekdsleaeqeee....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks. 289
                 ++ +gk e+a+e+l k  g+  +d    + e k++le  + +       + +el+ s++ r+r++++  +++f          yy p + +++g++ + 
  CDO72080.1 238 YIGQGKIEQAREILIKYHGDgdSDSPIVALELKEMLEVISARGsdkrWWDFRELFNSRSARYRTFLISCIAFFGTWDL-PPTSYYFPLMAKTAGITSEr 335
                 ****************55554344444445556666655444465356666899999999999999999999887654.6789999***********99 PP

                 ..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHH CS
    Sugar_tr 290 ..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRsk 386
                   ll +++   + ++a + +++  dr+GRR+ll+ +++gm++  ++++ ++ +++a+  + ++v i+f+++f+++fa+ w+p   ++ +E+   ++R+k
  CDO72080.1 336 tqLLLNALQTPIMMAAALSGLMWQDRLGRRKLLIASSTGMSLSVAVIT-ACTAQQAGRPVVGGVGIAFVYVFLVVFAFAWTPAQSLYPTEVLAFNTRAK 433
                 ***********************************************9.8888888889**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 387 alaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +la+   + ++a+++ +++ p++  + + + +++++    +l++++++++++etkg  leei+ +f
  CDO72080.1 434 GLALMNLLVNVASMFNTYVPPVAITRAS-WRFYIFYILWDALGALVIYLTFVETKGMNLEEIDHIF 498
                 ****************************.*********************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1  22.6   7.5e-35   2.2e-31       2     325 ..      56     421 ..      55     425 .. 0.83
   2 !   16.1  13.5   1.4e-06    0.0041      50     171 ..     353     482 ..     348     512 .. 0.66

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 7.5e-35
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 +l+ + ++++++++g +  + +  + +gi+p  +gl+++ly +g +++ l++G+ +d++G+r  +  g ++ ++g +++  +  +l +l+ +r++ Glg
  CDO72080.1  56 YLCSATNGFDANTFGGLSAIdTFVSYFGITPENQGLVAALYVIGNVAGCLFAGPCADKYGSRVGMASGSFICIIG-AVMQATaRNLSTLMGGRFILGLG 153
                 689999*********************************************************999999999999.444423266669*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 a ++ +ag a++++++ ++ rg+ +g ++++f lG+i+   l   l          Wr++  i a+ s+l++  f++++pe+p+    + ++e+     
  CDO72080.1 154 AVLVQTAGPAYVVEMAYPKYRGLLTGAYQTCFFLGTIVSTWLEYGLNFVTEtpqwtWRLPLAIQALPSVLVLA-FVWFIPETPRWYIGQGKIEQAreil 251
                 ********************************************998444488889**************955.7899999999999999999999*** PP

       MFS_1 189 ..........................kgtgpaplvpawkallkdpvlw..illialllfffgfsg..lltllplylqevlgls....glllaglllall 253
                                           ++   + + + +++l++++      +li+++ ff  + +  +++++pl + ++ g++     lll++l  +++
  CDO72080.1 252 ikyhgdgdsdspivalelkemlevisARGSDKRWWD-FRELFNSRSARyrTFLISCIAFFGTWDLppTSYYFPL-MAKTAGITsertQLLLNALQTPIM 348
                 *****8888888887777777777775555555555.8888888866345578888888888888*********.6*******8877666666444443 PP

       MFS_1 254 alvgailallagrls.drlgrrrrlllallllllaalglallavt..ssavllllvlvl..iGf.glgfvfpsllala 325
                 ++     a l+g +  drlgrr+ l+ +  +++l+++ +  + +     +v++ +++++  + +  ++f+++++++l 
  CDO72080.1 349 MA-----AALSGLMWqDRLGRRKLLIASSTGMSLSVAVITACTAQqaGRPVVGGVGIAFvyVFLvVFAFAWTPAQSLY 421
                 33.....447777777******************99999999999875566655533333344448888888888775 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.4e-06
       MFS_1  50 lplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqGlgagalfpagaaliadwfpke...........ergraigllsagfslG 133
                 l +  + dr+Grr++l+++ ++++l++++++ +    +         v+ G+g ++++   ++++ +w+p +            r+++++l+++ ++++
  CDO72080.1 353 LSGLMWQDRLGRRKLLIASSTGMSLSVAVITACtaqqA------GRPVVGGVGIAFVYVFLVVFAFAWTPAQslyptevlafnTRAKGLALMNLLVNVA 445
                 4555789*******************555552232332......333444444444444444444444444444444444444**************** PP

       MFS_1 134 ailgpllggllasslgWravfyilaivsllafv.lflll 171
                 +++   + ++ ++ ++Wr  fyi+ i+   ++  +++l 
  CDO72080.1 446 SMFNTYVPPVAITRASWR--FYIFYILWDALGAlVIYLT 482
                 ******************..5555555333333022333 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   1.2   6.7e-12     2e-08      77     238 ..      86     253 ..      68     261 .. 0.78
   2 !   10.4   3.8   5.1e-05      0.15      89     213 ..     349     479 ..     299     493 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.7e-12
       TRI12  77 sensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagp.agasplfvgelmsnktkflgllivsip 174
                  en++l+++l+ +g+    l  g  +d++g r  +     + ++ga++ +ta ++ tl+    +lg+ a     a p +v e+     k+ gll+ +  
  CDO72080.1  86 PENQGLVAALYVIGNVAGCLFAGPCADKYGSRVGMASGSFICIIGAVMQATARNLSTLMGGRFILGLGAVLvQTAGPAYVVEMAY--PKYRGLLTGAYQ 182
                 59****************************************************************9887515789******875..578899998887 PP

       TRI12 175 vvvtsg..lspylgqrlai...qgswrwifyiyiitsaiavllivvwyyppsfaql..hgkkvrkreelak 238
                 +    g  +s +l   l       +w w + + i      ++l  vw+ p + +    +gk  + re l k
  CDO72080.1 183 TCFFLGtiVSTWLEYGLNFvteTPQWTWRLPLAIQALPSVLVLAFVWFIPETPRWYigQGKIEQAREILIK 253
                 765544226777766665411145788888887777777778889***99665544115666666776665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5.1e-05
       TRI12  89 tgqavsilvmgrltdrfgrrpfvilthi.lgl.vgaivgctatkfnt.....l.laam.tllgv.aagpagasplfvgelmsnktkflgllivsipvvv 177
                 +  a+s l+     dr+grr ++i++   + l v  i  cta++        + +a +  +l v a   + a  l+  e+++ +t+  gl ++ + v v
  CDO72080.1 349 MAAALSGLM---WQDRLGRRKLLIASSTgMSLsVAVITACTAQQAGRpvvggVgIAFVyVFLVVfAFAWTPAQSLYPTEVLAFNTRAKGLALMNLLVNV 444
                 344444444...57*********9865325553777889***98753111111122221233331556677889*********************9999 PP

       TRI12 178 tsglspylgqrlaiqgswrw.ifyiyiitsaiavlli 213
                  s  + y+      + swr+ ify  i+  a+  l+i
  CDO72080.1 445 ASMFNTYVPPVAITRASWRFyIFY--ILWDALGALVI 479
                 999999*99988889999952444..55555555544 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   3.6   1.5e-09   4.5e-06      25     172 ..      84     234 ..      77     249 .. 0.91
   2 !    6.7   3.1    0.0012       3.7     231     312 ..     343     425 ..     309     441 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.5e-09
       MFS_4  25 lslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallf 123
                 +++ + gl+aa   +G  +G l+a   + +  +R+++  g + + + ++  a ++++++++  Rf++G+++ +v  +g + v++ a ++ r+ + ++  
  CDO72080.1  84 ITPENQGLVAALYVIGNVAGCLFAGPCADKYGSRVGMASGSFICIIGAVMQATARNLSTLMGGRFILGLGAVLVQTAGPAYVVEMAYPKYRGLLTGAYQ 182
                 678899********************************************************************************************* PP

       MFS_4 124 aGvGlGiavsgllvllllqlglsasslW...lalavlsavllllvalllpra 172
                     lG +vs  l + l+ +    +++W   la+ +l  vl+l+ ++ +p++
  CDO72080.1 183 TCFFLGTIVSTWLEYGLNFVTETPQWTWrlpLAIQALPSVLVLAFVWFIPET 234
                 *************************999444466777778888888888854 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
       MFS_4 231 lWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllG..ltflaitalvlqlarelappat 312
                 l + + +aa+++ l+w+ +  r++l  a    + + ++ ++++++ ++   ++v++v++     fl++ a++ + a+ l+p ++
  CDO72080.1 343 LQTPIMMAAALSGLMWQDRLGRRKLLIASSTGMSLSVAVITACTAQQA-GRPVVGGVGIAfvYVFLVVFAFAWTPAQSLYPTEV 425
                 44445689***************************9999999999655.6999*998655115677777888888888888776 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.0   1.6e-05     0.047      19     104 ..      72     154 ..      65     162 .. 0.73
   2 ?    6.8   3.9    0.0025       7.5      15      92 ..     345     420 ..     336     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.6e-05
     DUF3792  19 lllilalllyftslsekvlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsllikksgsafslkllikllll 104
                 l++i +++ yf+  +e++   l+ ++++++ ++g+++ag  a+k g   G++ G ++++i  +++  + ++ s++++  +i  l +
  CDO72080.1  72 LSAIDTFVSYFGITPENQG--LVAALYVIGNVAGCLFAGPCADKYGSRVGMASGSFICIIGAVMQATA-RNLSTLMGGRFILGLGA 154
                 6777788888888888776..9999******************************9888854444444.33333344444333333 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0025
     DUF3792  15 itlilllilalllyftslsekvlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsllikksgsa 92 
                 + +++ ++l+ l+++  l    l i+++  + lsv++    ++ +a++   + G+ ++++y+++ ++++++++ ++s+
  CDO72080.1 345 TPIMMAAALSGLMWQDRLGRRKLLIASSTGMSLSVAVITACTAQQAGRP-VVGGVGIAFVYVFL-VVFAFAWTPAQSL 420
                 55788999999************************99998777666655.48888888888888.7788877665554 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2   0.00086       2.6      22      84 ..      73     135 ..      52     141 .. 0.90
   2 ?   11.6   0.8     2e-05      0.06     134     184 ..     142     192 ..     134     200 .. 0.91
   3 ?   -2.4   0.9      0.37   1.1e+03      47      85 ..     375     412 ..     366     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00086
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  22 stittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgsllla 84 
                 s+i t+   F+++ ++ gl+a+++ ign++ +lf +  +++      ++ g++++ +g+++ a
  CDO72080.1  73 SAIDTFVSYFGITPENQGLVAALYVIGNVAGCLFAGPCADKYGSRVGMASGSFICIIGAVMQA 135
                 678899999********************************9999999**********99876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalG 184
                  ++ + ++lG+Ga++++t G +Y+ + + +k   l+ g+++++ +lG ++ 
  CDO72080.1 142 TLMGGRFILGLGAVLVQTAGPAYVVEMAYPKYRGLLTGAYQTCFFLGTIVS 192
                 57899******************************************9875 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.37
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  47 ignillilfvsYfggrghrPrwigigallmalgslllal 85 
                 ++ + ++++ +  ++++ rP + g+g+ ++ ++ +++a+
  CDO72080.1 375 MS-LSVAVITACTAQQAGRPVVGGVGIAFVYVFLVVFAF 412
                 44.446677788899999999999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.34s 00:00:01.12 Elapsed: 00:00:00.58
# Mc/sec: 2698.30
//
Query:       CDO72081.1  [L=747]
Description: hypothetical protein BN946_scf184962.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-155  519.0   6.1   1.3e-155  519.0   6.1    1.8  2  Sec6      Exocyst complex component Sec6
    0.00088   18.3   1.1     0.0089   15.0   0.4    2.5  2  Vps53_N   Vps53-like, N-terminal
      0.003   17.1   0.0     0.0068   15.9   0.0    1.5  1  HECT      HECT-domain (ubiquitin-transferase)
     0.0048   17.2   0.0      0.029   14.7   0.0    2.4  2  ACDC      AP2-coincident C-terminal
  ------ inclusion threshold ------
      0.036   13.8   5.6       0.96    9.3   2.0    3.7  3  SKA2      Spindle and kinetochore-associated protein 2
      0.045   13.3   6.3       0.11   12.1   0.5    2.9  3  Vps5      Vps5 C terminal like
       0.36   11.0   6.3       0.78    9.9   0.0    4.4  4  Vps51     Vps51/Vps67
       0.95    9.1   8.0       0.27   10.9   0.2    3.1  4  DUF3348   Protein of unknown function (DUF3348)
        3.9    7.6  15.0        7.8    6.6   0.0    5.9  7  COG2      COG (conserved oligomeric Golgi) complex component,


Domain annotation for each model (and alignments):
>> Sec6  Exocyst complex component Sec6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.093   1.8e+02     445     507 ..      58     119 ..      39     131 .. 0.81
   2 !  519.0   6.1  6.6e-159  1.3e-155       1     574 []     179     734 ..     179     734 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.093
                 HHHHCSS----.SHHHHHHHHHHHHHHHHHHHHHHHHTT-..---CCCCTTHHHH....HHHH-- CS
        Sec6 445 lralrkkklkf.aakkqkkfaekikrDaeklydffeklgseedaaylkqklraie.lllellele 507
                 lr l + ++++ + k+  ++ +++ +D + + ++f+++ +    ++++ +++  e ++ +lle  
  CDO72081.1  58 LRKLFGTRNSVqSIKDEMETVDRMCSDPTHAVSTFDQISR---VSMVHRNFEQTEeMVNNLLEMN 119
                 577888888888888888999***************9999...8899999999984446666644 PP

  == domain 2  score: 519.0 bits;  conditional E-value: 6.6e-159
                 HHHHHHHHHHHHHHHHHHHHSTTSSSCHHHH....HHHHHHHHHHHHHCCCCS.----TT--...............-----HHHHHHHHHHHHHHHHC CS
        Sec6   1 fskvdkliekFdkllweiirslielvregntslvvrlvkiverEekeDeklealreltkkekdeedaanfr.....arrprnykkkflealeesveerf 94 
                 f+++ +lie+Fd+ + e++r+++ +vr+gn  +vvrl+k+ve+E +eDek+ a++ ++k+ k ++ a++fr     ar  ++y+ k+++ +  s++++f
  CDO72081.1 179 FERLTGLIEAFDQYVLELARNILPIVRAGNPDVVVRLLKVVEMEAREDEKAIAIKLVKKAGK-MDAASKFRsmqanARVIKHYRSKVMKCITDSIQAKF 276
                 89********************************************************9955.69999999**************************** PP

                 TS--S---TT--HHHHH...HHHHHHHHHHHHCCCCCS-TTT-HHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHH.HTTTSSHHHC.CC CS
        Sec6  95 eeckekfseddkklellenldwlledLevVkdelaplfPpswkifktyvkiYhnklhdllqelvsseleaedilailewvkkYskklsklnpelefkkk 193
                 +e+ + ++ d+    +le+l ++++dL+ +++ ++p+fPps++i++tyv+ Yh++l++ +++lv+se+ea  +l++ +w+k+Y+k++ +    l++  +
  CDO72081.1 277 DELYAAHERDP--AGFLESLVFIYKDLIRIESDVVPCFPPSYDIWQTYVREYHKALNKTITRLVNSEPEASALLTLHAWIKEYKKSMRE----LGIPSE 369
                 **********8..788899******************************************************************9999....889899 PP

                 C---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---..EESSSEE-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH CS
        Sec6 194 elkpllldekkeeLledYlklivkkmkeWldnllktEvkkftereeppeededglyvlplpvdvfqmlaeqvdvaaeskqakilvgvleelsellksrq 292
                 +l+p+ll++k++ L+edYl+li kk++eW +nl+ktEv +ft+reeppe ++dgly + ++v+++ m+++qvd a +s+q+ +l++ +ee++++++s q
  CDO72081.1 370 WLEPPLLEGKEQSLIEDYLQLIIKKLDEWSENLMKTEVAAFTAREEPPEISSDGLYTTAGTVIFLDMVNQQVDLALDSGQGLVLARAIEEVNRVMRSIQ 468
                 9************************************************************************************************** PP

                 HHHHHHHHC-TTSTT.............HHHHHHHHHHHHHHHHH...HHHHHC.........---HHHHHHHHHHHHHHHHHHHHHHCHHHHCCTTCC CS
        Sec6 293 dawqelleeelkkymsvknnereeskpglveyliAlaNdqlkcadyaeslsskylelvsskyeeriteefeelldgfvdlskeaisalleiifnDLkpa 391
                 d w +l++ e+kk ++ +    ee+++glvey+iAlaNdq+k+ad++e+ls+++++lvs+ky   i+++++++ldg+ d++k+ +++l+ iifnDLkpa
  CDO72081.1 469 DRWVKLVDTEYKKHTEKP----EEVPGGLVEYCIALANDQIKSADFTEALSARIEPLVSEKYRVTIHDKLNDALDGYLDVAKKYTQTLILIIFNDLKPA 563
                 *************95444....4699************************************************************************* PP

                 CCHHHHTTTSSHHHHHHHHHHHHTTTTGGGS.S-HHHHHHHHHHHHHHHHHHHHHHHCSS----SHHHHHHHHHHHHHHHHHHHHHHHHTT-..---CC CS
        Sec6 392 lsklftkkWytgelmeqivetiedYlndykeylspelfevlleelldelvveYlralrkkklkfaakkqkkfaekikrDaeklydffeklgseedaayl 490
                 +++lf ++Wy+g+ + qi+et++dYl+dy+ yl+++lfevlle+lld+ +v+Yl al ++        +++++e++++D++++y+ff  + +    + l
  CDO72081.1 564 IKQLFGPSWYEGTHA-QIIETMRDYLSDYQAYLNESLFEVLLEDLLDTYLVTYLTALANGPKLN----MPAATERMRQDIDEAYKFFGTYKK---MKEL 654
                 ***********9765.7****************************************9986555....8***********************...777* PP

                 CCTTHHHH...HHHH--SHHHHHHHHHHHHHS-TT--HHHHHHHHHCCSS-STCHHHHHHHHTT---SS----....-SSCCCS CS
        Sec6 491 kqklraielllelleledpdavplevetllesypdisedhveavlkaRkDldksevkelveqlkeikkevesavepprtifsrv 574
                 ++++++++ +l +le+++ ++v+l +++++ + +   +++vea++kaR+Dld+s v e+++++k+ +ke   ++  ++ti++++
  CDO72081.1 655 EPQMEVLDQVLSMLEASK-SLVFLSYWQFA-KVHGPCIQFVEALMKARGDLDRSSVSEVMDSVKRKVKEENLTD--QPTIMKKI 734
                 ********889*******.***********.6777779***************************988755554..49999985 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   4.5e-06    0.0089       9     130 ..      11     131 ..       3     161 .. 0.88
   2 ?    0.8   0.0     0.096   1.9e+02     343     377 ..     280     340 ..     198     343 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.5e-06
     Vps53_N   9 yinellpteqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiAKknltts 107
                  + e l +   la++   +kkl++e   +d+ ++s v++q++ +++g ++l    ++++++ ++++++        + v+    +I++  +  +n  ++
  CDO72081.1  11 AVGEYLQSPDDLAKVAAFRKKLEKEKASIDARLRSGVKEQLDATRDGLRKLFGTRNSVQSIKDEMETVDRMCSDPTHAVSTF-DQISRVSMVHRNFEQT 108
                 5666677777899999999*************************************************99999999999875.78************** PP

     Vps53_N 108 iTtlkrLkmLvtavesleallsk 130
                   ++++L  + + ++ le +l++
  CDO72081.1 109 EEMVNNLLEMNSKLDMLERMLEE 131
                 99999999999999999999875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.096
     Vps53_N 343 a.......................fegaisscFephltl...yiesqektlsellekfvse 377
                                         +e  +  cF p +++   y+++  k l++++ ++v++
  CDO72081.1 280 YaaherdpagfleslvfiykdlirIESDVVPCFPPSYDIwqtYVREYHKALNKTITRLVNS 340
                 0444444555555555555555557888889999998873336889999999999888865 PP

>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.4e-06    0.0068     144     229 ..      36     125 ..      11     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHTGGGHHHHHHHHHHHHTTS.-HHHHTTS.-HHHHHHHHBCSS.S..--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 144 klyvnyllkksvekqleaflkGfsevi.pskalklf.daeelellisGed.e.lidvedlrrnteykggynaesetiewlweilkefspe 229
                 k+ ++++l  +v++ql+a ++G+++++  +++++ + d+ e    ++ +  + + ++++++r++ +++ +++++e++++l+e+ ++++  
  CDO72081.1  36 KASIDARLRSGVKEQLDATRDGLRKLFgTRNSVQSIkDEMETVDRMCSDPtHaVSTFDQISRVSMVHRNFEQTEEMVNNLLEMNSKLDML 125
                 56799**********************64556665514456666788887546999*************************986555544 PP

>> ACDC  AP2-coincident C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.9   3.8e+03       8      36 ..     550     578 ..     547     600 .. 0.66
   2 !   14.7   0.0   1.5e-05     0.029      12      71 ..     601     666 ..     592     674 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.9
        ACDC   8 KeaikliLeDLlnnclpqlasslanktss 36 
                 ++ i++i +DL+  +   + +s  + t  
  CDO72081.1 550 QTLILIIFNDLKPAIKQLFGPSWYEGTHA 578
                 56688999999988888777776655443 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.5e-05
        ACDC  12 kliLeDLlnnclpqlasslanktss......kelkrvieahikyvenakslkelqpylklFstcil 71 
                 +++LeDLl+  l+ + + lan ++       +++++ i+ + k+    k++kel+p ++++++ + 
  CDO72081.1 601 EVLLEDLLDTYLVTYLTALANGPKLnmpaatERMRQDIDEAYKFFGTYKKMKELEPQMEVLDQVLS 666
                 78********************999*********************************99998875 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.034        67      41      95 ..      23      77 ..      12      92 .. 0.82
   2 ?    9.3   2.0   0.00048      0.96       4      57 ..     108     160 ..     106     191 .. 0.79
   3 ?   -1.8   0.0       1.3   2.6e+03      21      39 ..     268     286 ..     220     307 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.034
        SKA2 41 vkLlerlkkvkeelqaLkeqceellaekkelidkirttlvanrellqqLqasael 95
                +k+ +  kk+ +e +++ ++++   +e+ + ++   ++l ++r+ +q+++ ++e+
  CDO72081.1 23 AKVAAFRKKLEKEKASIDARLRSGVKEQLDATRDGLRKLFGTRNSVQSIKDEMET 77
                5566666899999999999999999999999999999999*********999964 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00048
        SKA2   4 vdklealFqkaesdLdyvqhrLekefqqsypdnaeNpvkLlerlkkvkeelqaL 57 
                  +++++ + +++s+Ld++++ Le++ ++++     ++++++ +l+++ +  ++ 
  CDO72081.1 108 TEEMVNNLLEMNSKLDMLERMLEEDRNDILGPAP-HLLRIHFQLNRLEAFRNQT 160
                 688999************************9995.9999999888887644444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.3
        SKA2  21 vqhrLekefqqsypdnaeN 39 
                 ++   +  f + y+ ++++
  CDO72081.1 268 ITDSIQAKFDELYAAHERD 286
                 3333344444555554444 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   5.4e-05      0.11      30     108 ..      48     126 ..      44     136 .. 0.95
   2 ?   -3.8   0.0       3.8   7.5e+03      45      63 ..     163     181 ..     151     191 .. 0.51
   3 ?    3.3   0.2     0.026        52      12      68 ..     631     686 ..     626     734 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
        Vps5  30 kqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvlt 108
                 k++ld+  + L+kL  + ++++s + e+ ++    +   ++ ++ +   ++s +  ++ ++ee +++lle++++ d+l+
  CDO72081.1  48 KEQLDATRDGLRKLFGTRNSVQSIKDEMETVDRMCSDPTHAVSTFDQISRVSMVHRNFEQTEEMVNNLLEMNSKLDMLE 126
                 7899**********************************************************************99874 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.8
        Vps5  45 kaiellvsqrkelasatae 63 
                 +a +++ + r++l    + 
  CDO72081.1 163 QAKKSSADTRNTLTRWFER 181
                 3333333334333333333 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.026
        Vps5  12 isksstkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelaksl 68 
                 ++ + + ++E  ++F + k ++ +le q+  L +++++l+++++ +  +  ++ak+ 
  CDO72081.1 631 TERMRQDIDEAYKFFGTYK-KMKELEPQMEVLDQVLSMLEASKSLVFLSYWQFAKVH 686
                 5667788999999998765.799******************9999999999998875 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00039      0.78       8      84 ..       8      92 ..       1      94 [. 0.77
   2 ?   -2.6   0.2         3     6e+03      59      73 ..     114     128 ..     101     132 .. 0.56
   3 ?   -1.5   0.0       1.4   2.8e+03       4      27 ..     587     610 ..     584     612 .. 0.84
   4 ?    0.6   0.1       0.3   5.9e+02      55      77 ..     646     668 ..     631     675 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00039
       Vps51  8 aeayvrellakst.lkellkveasllseiraldselkalVydn.......YskLisasdtIrkmksemdkldqklselkqaiski 84
                a + v e l++ + l+++ +++++l++e+   d+ l++ V +         +kL+ + + ++++k+em+++d + s+ ++a+s +
  CDO72081.1  8 AAQAVGEYLQSPDdLAKVAAFRKKLEKEKASIDARLRSGVKEQldatrdgLRKLFGTRNSVQSIKDEMETVDRMCSDPTHAVSTF 92
                55555555554433899***********************976333333369********************9999988888766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
       Vps51  59 tIrkmksemdkldqk 73 
                  + +m+s++d l+ +
  CDO72081.1 114 NLLEMNSKLDMLERM 128
                 344455555555555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.4
       Vps51   4 pdfdaeayvrellakstlkellkv 27 
                   +d +ay++e l +  l++ll +
  CDO72081.1 587 YLSDYQAYLNESLFEVLLEDLLDT 610
                 56799*********9999999876 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.3
       Vps51  55 sasdtIrkmksemdkldqklsel 77 
                  + ++ ++++ +m+ ldq ls l
  CDO72081.1 646 GTYKKMKELEPQMEVLDQVLSML 668
                 55555555555555555555444 PP

>> DUF3348  Protein of unknown function (DUF3348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.33   6.5e+02      35     118 ..       9      93 ..       2     107 .. 0.72
   2 ?   10.9   0.2   0.00013      0.27     162     217 ..     124     180 ..     118     186 .. 0.79
   3 ?    0.6   0.1      0.18   3.6e+02      46      94 ..     228     275 ..     225     289 .. 0.77
   4 ?   -3.8   0.0       4.1   8.2e+03     210     225 ..     348     363 ..     328     364 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.33
     DUF3348  35 adrLsqwLdwtdaiaLssalna.kapaaasearaadeeaeaelarvRaaLaaaiaadsalaaarrraaakaaaeeepaeaeadfa 118
                 a+  + +L+  d +a  +a  +  ++++as +++ ++  +++l  +R+ L +   ++++ ++ + ++++  ++ ++p++a  +f 
  CDO72081.1   9 AQAVGEYLQSPDDLAKVAAFRKkLEKEKASIDARLRSGVKEQLDATRDGLRKLFGTRNSVQSIKDEMETVDRMCSDPTHAVSTFD 93 
                 6677888888888888888877434444444445555579999999999999999999988888888777777777777766665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00013
     DUF3348 162 vmeraLaarersllaavPalLekrFerlrkaeqaalaeaeaaaeaaaaa.apgaWLd 217
                 ++er+L++  + +l+  P lL  +F+  r ++ ++++ ++a++++a ++ +   W++
  CDO72081.1 124 MLERMLEEDRNDILGPAPHLLRIHFQLNRLEAFRNQTMHQAKKSSADTRnTLTRWFE 180
                 69***********************98887777777777666665554416677876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.18
     DUF3348  46 daiaLssalnakapaaasearaadeeaeaelarvRaaLaaaiaadsala 94 
                  aia++ + +a +  aas+ r+++++ ++ +++ R++ ++ i+++ +++
  CDO72081.1 228 KAIAIKLVKKAGKMDAASKFRSMQAN-ARVIKHYRSKVMKCITDSIQAK 275
                 69999999999888888888887664.8899999999999998876655 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 4.1
     DUF3348 210 aapgaWLdvFrkdlqs 225
                  + +aW++ ++k +++
  CDO72081.1 348 LTLHAWIKEYKKSMRE 363
                 3678999999999987 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.32   6.4e+02      78     108 ..      25      56 ..      22      83 .. 0.53
   2 ?    1.8   0.9      0.12   2.4e+02      11      76 ..      90     155 ..      75     206 .. 0.65
   3 ?   -4.0   0.0       7.5   1.5e+04      65      87 ..     248     270 ..     242     277 .. 0.62
   4 ?    2.5   0.0     0.072   1.4e+02      35      53 ..     323     341 ..     317     364 .. 0.91
   5 ?   -0.5   0.0      0.62   1.2e+03      30      56 ..     455     481 ..     446     552 .. 0.73
   6 ?    6.6   0.0    0.0039       7.8      23      57 ..     576     611 ..     564     620 .. 0.87
   7 ?   -2.1   0.0       1.9   3.8e+03      89     107 ..     705     723 ..     681     736 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.32
        COG2  78 laaarkkvesvreklsereee.veskleeake 108
                 +aa+rkk+e+ ++++++r +  v+++l++ ++
  CDO72081.1  25 VAAFRKKLEKEKASIDARLRSgVKEQLDATRD 56 
                 55666666666666665543225555554433 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
        COG2  11 pdFdpdqFvse.lrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleeves 76 
                  +Fd+++ vs   r++ + e++ ++L ++ ++l+  l ++ +ed +d +    hL  +  +l+++e 
  CDO72081.1  90 STFDQISRVSMvHRNFEQTEEMVNNLLEMNSKLD-MLERMLEEDRNDILGPAPHLLRIHFQLNRLEA 155
                 5777777777777777777777777777777775.46667777777766666666666666666654 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 7.5
        COG2  65 vglqeeleevesplaaarkkves 87 
                 +++q++ + +++  ++++k +++
  CDO72081.1 248 RSMQANARVIKHYRSKVMKCITD 270
                 56666666666666666665554 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.072
        COG2  35 Leaylkllekellelvned 53 
                  ++y k l+k + +lvn++
  CDO72081.1 323 VREYHKALNKTITRLVNSE 341
                 689**************86 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.62
        COG2  30 slrrdLeaylkllekellelvnedyad 56 
                    ++ +  + +++++ ++lv+++y+ 
  CDO72081.1 455 RAIEEVNRVMRSIQDRWVKLVDTEYKK 481
                 555667777788888888888888875 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0039
        COG2  23 rhgvpLeslrrdLeaylkllekellelvnedyad.F 57 
                  h++ +e++r+ L +y+++l+++l e+  ed+ d +
  CDO72081.1 576 THAQIIETMRDYLSDYQAYLNESLFEVLLEDLLDtY 611
                 688999********************9999988766 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 1.9
        COG2  89 reklsereeeveskleeak 107
                 r+++se +  v+ k++e +
  CDO72081.1 705 RSSVSEVMDSVKRKVKEEN 723
                 5667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 4680.18
//
Query:       CDO72082.1  [L=486]
Description: hypothetical protein BN946_scf184962.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-33  115.2  28.4      3e-33  115.2  28.4    1.3  1  MFS_1     Major Facilitator Superfamily
    4.7e-06   25.7   8.7    4.7e-06   25.7   8.7    2.2  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.029   14.1   0.5      0.051   13.3   0.5    1.3  1  DUF2101   Predicted membrane protein (DUF2101)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2  28.4     5e-37     3e-33       8     352 ..      66     430 ..      61     431 .. 0.78

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 5e-37
       MFS_1   8 salarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpa 105
                 + la++ + p++p  +a++l +++ +i+l++tl  + aa++sl+++  s  +Grr v++++l ++++g  +++ + +s+++l++ rv+q+lga++++++
  CDO72082.1  66 AVLASGSFVPSVP-EIARELDSTGPVINLAITLSIICAAIGSLFWATYSGTYGRRVVYIWSLPCLCIG-SIGVATsHSVPALMIWRVIQALGASSGLSV 162
                 56889999*****.9*****************************************************.55552348888******************* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.....kgtgpaplvp. 198
                 ga ++ d++  eerg a+g++ ++  +G++++p++gg+ ++++ Wra+ +++ i++l+  +   ++++ +++  + ++ ++ +     k   ++ +++ 
  CDO72082.1 163 GAGAVGDMYRLEERGTAMGIFFGSCFVGPAVAPVAGGIATHYATWRAAQWAIFIMGLVPYIP--IVFWLPETLDPEVARTKFLeasggKEGRRFVWLNp 259
                 **********************************************************9663..44444444444443333333446655555555553 PP

       MFS_1 199 .awkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgailallagrlsdr.............lgrrrrlllall 282
                     all++p    +li++    + +s+ l  l+ ++  + + +++  ++g+++ +++l+++++a+lag l+dr             ++  r +    +
  CDO72082.1 260 fKSLALLRSPN---ILITVSDPVTRMSAlLIPLSYTI-GKAYSITNEAIIGMFFLASGLGNIFGAPLAGHLADRaviegrarrggvwYPEDRLRATLSG 354
                 31333444443...44444444234444255555554.7777777779******************************999999997777888888888 PP

       MFS_1 283 llllaalglallavtssavllll.......vlvliGfglgfv.fpsllalasdlappeeagtasglfntagslggalg 352
                 +l+l+ l+ +l ++++  v +++        l++ G+++ ++ +p++ ++++ l+  ++++ + ++ + +++++ al+
  CDO72082.1 355 ALFLVPLSTLLSGLATQFVPGMIgivinviCLFVNGVAVDIMlTPPSSYYVDILH--SRSAEVWAASSAVRQFAVALS 430
                 8888888888888884444444433355535555999555553777777777777..999999999999999998876 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   8.7   7.9e-10   4.7e-06      53     194 ..      96     232 ..      66     250 .. 0.90
   2 ?   -1.4   0.1      0.14   8.2e+02      46      72 ..     303     329 ..     284     330 .. 0.82
   3 ?   -3.7   2.0      0.66   3.9e+03     373     373 ..     402     402 ..     352     467 .. 0.47

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 7.9e-10
                 HTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHH CS
    Sugar_tr  53 siflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGi 151
                  + ++ a+iGslf  + + ++GR+ +++ +  +++ig++  a+++   sv +l++ Rv+  +g+     +    ++ +   + Rg+ ++++  ++ +G 
  CDO72082.1  96 TLSIICAAIGSLFWATYSGTYGRRVVYIWSLPCLCIGSIGVATSH---SVPALMIWRVIQALGASSGLSVGAGAVGDMYRLEERGTAMGIFFGSCFVGP 191
                 45578899*************************************...***************9999999999************************** PP

                 HHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHH.HGGGS--- CS
    Sugar_tr 152 lvaaifglglnktsnadgwrillglqlvpalllli.lllflPES 194
                  va + g +  ++     wr  ++  +++ l+  i ++++lPE+
  CDO72082.1 192 AVAPVAGGIATHYAT---WRAAQWAIFIMGLVPYIpIVFWLPET 232
                 *******99999999...99999999999976555266778987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.14
                 .HHHHHHHTHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdr 72 
                   +g+++ +  +G i+G+ +ag l+dr
  CDO72082.1 303 AIIGMFFLASGLGNIFGAPLAGHLADR 329
                 578999999999999999999999987 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 0.66
                 H CS
    Sugar_tr 373 v 373
                  
  CDO72082.1 402 S 402
                 2 PP

>> DUF2101  Predicted membrane protein (DUF2101)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   8.5e-06     0.051      42     143 ..     377     477 ..     365     483 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.5e-06
     DUF2101  42 lyliislvlvflksllvlllaalleflllryilirniellidfeayrafylavsviailaylgyvllrklslelyyylvyllvivivvlvfryyfksry 140
                 + ++i ++ +f++ + v ++++     ++  +  r  e+     a r+f +a+s+  il  ++ + + + + +l+  ++ +++i ++++++ry  ++r 
  CDO72082.1 377 IGIVINVICLFVNGVAVDIMLTPPSSYYVDILHSRSAEVWAASSAVRQFAVALSTAGILPLINAIGV-AATDALFAVIAWVGFIRLIIVTIRYGERMRQ 474
                 55899**********9999999999999999999***************************998766.5577899999**************9888776 PP

     DUF2101 141 grD 143
                   D
  CDO72082.1 475 WVD 477
                 555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3172.46
//
Query:       CDO72083.1  [L=712]
Description: hypothetical protein BN946_scf184962.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-37  128.9   0.0    3.4e-37  128.2   0.0    1.3  1  CN_hydrolase  Carbon-nitrogen hydrolase
    2.3e-23   82.6   0.0    7.1e-23   81.0   0.0    1.7  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.0   3.7e-41   3.4e-37      14     260 ..       5     270 ..       2     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 3.7e-41
                   HHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHB....HSSSHHHHHHHHHHHHHTEEEEEE..EEEEEC.CTTEEEEEEEEEEEET CS
  CN_hydrolase  14 leanlqklleliaeAarkgadLivlPElfitgykeeahfleaAe....aglgetlallaalarkngiavvig..lierel.tngklqayntavlldl 103
                   +++nlq++le i+ A++kga L v PEl itgy + +hfle ++    +   e+la + + +   +i++ ig  + ++++ +n+++  +n+++ll +
    CDO72083.1   5 IQGNLQRILESIRIAKEKGATLRVGPELEITGYGCMDHFLEGDTglhsW---EVLAEILKSSDAKDIVCDIGmpVVHKNViYNCRVIIHNSQILLIR 98 
                   579**************************************99996665...********************6666666699999999********* PP

                   TSEE...EEEEE-SS--EECTTSCECCGHHTSCS.............-SSS-EEEETTEEEEEEEGGGGGSHHHHHH.HHHTT-SEEEEBH.GCCCT CS
  CN_hydrolase 104 dgkl...vgkyrKlhLfpgeprpptaverelfep.............gdgipvfdtpvgkiGaaiCyeigfpellra.lalkgaeilvnlserapvp 183
                    +++    g+yr+l++f + +++ ++ve +++++             gd  +v++t  ++iG++ C+e + p + ++ ++l+g+ei +n s++++++
    CDO72083.1  99 PKMWmanDGNYRELRWF-TPWAKHRQVEDHYLPRiiraitgqekvpfGD--AVISTVDTCIGVELCEELFTPASPHIlMGLDGVEIFTN-SSGSHHE 191
                   *999*************.89*****************************..**************************************.8899999 PP

                   CHHHHHHHHHHHHH..HHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTE...EEEEEEEHHHHHHHH CS
  CN_hydrolase 184 ksmgppqwellgra..ralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeeg...vliaeidladvratr 260
                    ++     +l+ +a   a  +g++ ++anq g+  ++++ ++ ++a+i  +Gr++a+ ++++ +   v++a+id +dvra r
    CDO72083.1 192 LRKLYRRIDLMKEAtmKASVGGVY-LYANQQGC--DGDRLYYDGCAMIVVNGRVVAQGSQFSLKdveVVTATIDIEDVRAHR 270
                   999999999986651167779***.********..***************************99999***********9865 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   7.9e-27   7.1e-23       8     198 ..     332     593 ..     329     605 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 7.9e-27
                   HHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHH......................................TCGEEEEEE--SSSTTHHHHHHHH CS
  NAD_synthase   8 flkeyvkkagakgvvlGlSGGvDSslvaalavkal......................................gkenvlalllPssvsseedvedal 66 
                   +l +y++++  +g  + lSGG+DS  ++++  ++                                        +  +++ ++ +++ss+   + a+
    CDO72083.1 332 WLWDYLRRSRTQGYFIPLSGGIDSCATSVIVYSMCrlvaeaarngdaqviadarriagepegseytpvdprefAHRIFHTCYMGTENSSPATRKRAK 428
                   7889********************988887776666778*******************************99989999******************* PP

                   HHHHHHTSEEEE---HHHHHHHHHHHHHHH..............-HHHHHHHHHHHHHHHHHHHHH........HHTEEEB---BHHHHTTT-S-TT CS
  NAD_synthase  67 alaenlgievktidikpivrafeqelkeak..............edlakgNlkaRiRmailyaian........klnllvlgTgnksElvvGyfTky 141
                    lae +g     ++++  v+a+++ +   +              e+la +N++aR+Rm+i y +a         + +llvlg  n  E + GyfTky
    CDO72083.1 429 DLAEAIGSYHIDMNMDTLVTAVRDLFAYVTgvkprfrvhggtqaENLALQNIQARLRMVIAYLFASlmpwvrgrQGGLLVLGSANVDESLRGYFTKY 525
                   ***********************9555544456677888888989*******************96222222225579******************* PP

                   TTT--SBETTTTS-HHHHHHHHHHTT......--HHHHCS--B--S.....STT-BHHHHHSS-HHHH CS
  NAD_synthase 142 GDgaadlapiaellKtevkeLakeln......vPervlkkpPsAdL.....kpgqtDeeeLgikYdel 198
                      +ad++pi+ + Kt+ k+  ++        +    l+  P+A+L        q+De+++g++Ydel
    CDO72083.1 526 DCSSADVNPIGAISKTDLKKFIAYARdafdlpILTDFLEAVPTAELepiteTYVQADEADMGMTYDEL 593
                   *********************999877888777799**********88877778************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4823.47
//
Query:       CDO72084.1  [L=200]
Description: hypothetical protein BN946_scf184962.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1229  (0.0685482); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 1262.57
//
Query:       CDO72085.1  [L=228]
Description: hypothetical protein BN946_scf184962.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-07   30.0   0.6    1.8e-05   24.0   0.1    2.1  2  Lycopene_cycl   Lycopene cyclase protein
    5.5e-06   25.8   0.0    2.4e-05   23.7   0.0    1.8  2  Thi4            Thi4 family
    1.2e-05   25.1   1.1    4.1e-05   23.3   1.1    1.7  1  DAO             FAD dependent oxidoreductase
    1.5e-05   24.4   0.1    3.7e-05   23.1   0.1    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.5e-05   25.0   0.2    0.00012   22.1   0.2    2.2  1  NAD_binding_9   FAD-NAD(P)-binding
    0.00015   21.2   2.5    0.00036   19.9   2.5    1.6  1  FAD_binding_3   FAD binding domain
    0.00052   19.4   0.0     0.0045   16.3   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0015   18.7   0.1     0.0039   17.4   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.003   16.5   0.4     0.0054   15.6   0.1    1.5  2  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.01   14.9   1.3      0.017   14.3   0.6    1.6  2  FAD_binding_2   FAD binding domain
      0.015   14.0   0.8      0.027   13.2   0.8    1.7  1  HI0933_like     HI0933-like protein
      0.019   14.3   0.1      0.025   13.9   0.1    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
      0.063   13.8   0.2       0.43   11.2   0.1    2.2  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.066   13.0   0.0       0.52   10.1   0.0    2.1  2  Lsm_C           Lsm C-terminal
      0.073   12.6   0.1       0.13   11.8   0.0    1.5  2  DUF4147         Domain of unknown function (DUF4147)
       0.14   11.2   0.2       0.26   10.4   0.0    1.5  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   1.6e-08   1.8e-05       1      38 [.      37      77 ..      37      96 .. 0.84
   2 ?    4.7   0.1     0.011        13      86     139 ..     160     219 ..     141     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.6e-08
  Lycopene_cycl  1 DvvviGaGpAglslAarltea...kpglkvvlieaspsllf 38
                   Dvv++G+GpAgl+lA  l ++   +  +k+vl+ea++ +  
     CDO72085.1 37 DVVIVGGGPAGLALATALSSNsllRDTMKIVLVEAGDLSKV 77
                   9****************95552336789********98744 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
  Lycopene_cycl  86 skrlkeellerlv.engvkll.eakvesveeeea....geslvvleggrkirarlvvdar 139
                      +l++ ll+rl  +++v+   + kv+s++ ee     g  lv l++gr +r rl v a 
     CDO72085.1 160 NLNLQRALLRRLHdTSAVEIAdKVKVQSIQREERegggGWPLVHLSDGRVLRTRLLVSAM 219
                    55799999****9777776542689****9888653334579************999884 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.2e-08   2.4e-05       5      50 ..      23      72 ..      20     118 .. 0.68
   2 ?   -0.6   0.0      0.59   6.6e+02      31      58 ..     174     199 ..     172     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.2e-08
                HHHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHC....TTS-EEEEESS CS
        Thi4  5 veryfedllkyaesDvvivGaGssGLtaayylakk....pdlkvailers 50
                ++r f     + e+DvvivG+G++GL+ a  l+ +      +k++++e+ 
  CDO72085.1 23 LRRRFASTTAHQETDVVIVGGGPAGLALATALSSNsllrDTMKIVLVEAG 72
                57888899999*********************998444346899999974 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.59
                 HHHHHHHHCTTS-EEEEESSSS--TTTT CS
        Thi4  31 taayylakkpdlkvailersvspGGGaw 58 
                 t+a  +a k  +kv  + r+   GGG w
  CDO72085.1 174 TSAVEIADK--VKVQSIQREEREGGGGW 199
                 567788888..99999999999999999 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.1   3.6e-08   4.1e-05       1      91 [.      37     147 ..      37     225 .. 0.47

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.6e-08
                 EEEEECTSHHHHHHHHHHHHTT.......EEEEESSSSTTSSGGGSSEEEEESSS.STHHSTH.......HHHHHHHHHH.......HHHHHHHHHHSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg.......VtllekgdiagsgaSgrnsgllhsgl.rylpeas.......elarlsleal.......eelreleeelgi 77 
                 dvvi+GGG +Gl+ A +L+          ++l+e+g ++++ a +   +  +s   ++  +as         +  ++e++       + ++ +++  +i
  CDO72085.1  37 DVVIVGGGPAGLALATALSSNSllrdtmkIVLVEAG-DLSKVANWTQPAGTYSNRvSSITNASqsflqeiGAWSHVEESRtcpidemQIWDGVSDA-RI 133
                 9*****************76545556899*******.65544444444433333331111121223333322344444444445444666666666.67 PP

                 TTSEEEEEEEEEES CS
         DAO  78 didyrrtGllslaa 91 
                  +  +    l +a 
  CDO72085.1 134 TFSIHDDHALGVAG 147
                 77777777777764 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   3.3e-08   3.7e-05       2      51 ..      37      90 ..      36     202 .. 0.67
   2 ?    0.0   0.0      0.35   3.9e+02     185     234 ..     163     218 ..     140     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.3e-08
                 SEEEE--SHHHHHHHHHHHH.....HTS-EEEEETTHCHHHCSHHHHCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.....agakvtlvelegtclnggcllskallgvae 51
                 dvv++GgGpAGla+a+ l+        +k++lve  g +  +  + ++a + + +
   CDO72085.1 37 DVVIVGGGPAGLALATALSSnsllrDTMKIVLVE-AGDLSKVANWTQPAGTYSNR 90
                 9******************98887779******5.44444444444444444444 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.35
                  HHHHHHHHHHHT.TEEEEESCEEEEEEETTE....EEE.EEETTSCEEEESEEEE- CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealeke.Gvevklgtsvkeidgnge....kle.vvledgeeidadlvvva 234
                  l++al ++l++   ve+  + +v+ i+++++        v+l+dg+++ ++l+v a
   CDO72085.1 163 LQRALLRRLHDTsAVEIADKVKVQSIQREERegggGWPlVHLSDGRVLRTRLLVSA 218
                  45555666665557888888888888888876554333788999999988888866 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   1.1e-07   0.00012       1      68 [.      39     100 ..      39     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.1e-07
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddppt 68 
                    +ivG+Gp+Gla++++L +++  ++ ++i l++   +   +v++ +q++    N ++s    +t+ +++
     CDO72085.1  39 VIVGGGPAGLALATALSSNSLLRDTMKIVLVEAGDLS--KVANWTQPAGTYSNRVSS----ITNASQS 100
                    7*******************999*********98886..678888877755554444....4444433 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   2.5   3.2e-07   0.00036       1     133 [.      35     190 ..      35     196 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
                    EEEEEEE--SHHHHHHHHHHHHTTHH.....EEEEES......SSSSCCSS....S--EEEHHHHHHHHHTT-HHHHHHHS.EECCCCEEEEEEEC CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvr.....vvlvek......rsttvvlp....radglnqrtmellrqlGledrilaeg.apnelmgealynel 80 
                    etdV+IVG+GpaGl la+ Ls+          vlve        ++t + +    r + +++ +   l+++G +  +++    p + m++  + + 
     CDO72085.1  35 ETDVVIVGGGPAGLALATALSSNSLLrdtmkIVLVEAgdlskvANWTQPAGtysnRVSSITNASQSFLQEIGAWSHVEESRtCPIDEMQIWDGVS- 129
                    69****************99987332455554444431111111222222233345555555566666666666666544303333333333333. PP

                    CCC.......CEEEEEHH.CHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEE CS
  FAD_binding_3  81 sdt.......pkaradle.lesspervtvypqteleriLvehaeerg.lqvrfktevesleq 133
                     d         ++ + +  +e+  ++ t+    +l+r+L+ ++  +  +++  k +v+s+++
     CDO72085.1 130 -DAritfsihDDHALGVAgAEAPSQMSTMTENLNLQRALLRRLHDTSaVEIADKVKVQSIQR 190
                    .2223433333333333344555555556666666666666666666666666666666655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     4e-06    0.0045       1      33 [.      39      75 ..      39     107 .. 0.82
   2 ?    0.7   0.0      0.22   2.5e+02      87     111 ..     168     192 ..     139     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl....edylilEkgnig 33
                 +I+G+GPaGla a++l  + l     +++ +E g ++
   CDO72085.1 39 VIVGGGPAGLALATALSSNSLlrdtMKIVLVEAGDLS 75
                 7***************999885544467777777765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
  Pyr_redox_3  87 lrevaksfelpiklfeeVesvkked 111
                  lr++ ++  ++i  + +V+s+++e+
   CDO72085.1 168 LRRLHDTSAVEIADKVKVQSIQREE 192
                  6778888888888888888888865 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.5e-06    0.0039       1      29 [.      40      73 ..      40      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-06
                   EE--SHHHHHHHHHHHCC.....TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.....gfdvlllekrd 29
                   IvG+G +Gl++A +L+ +       +++l+e++d
     CDO72085.1 40 IVGGGPAGLALATALSSNsllrdTMKIVLVEAGD 73
                   9***************743333377999999875 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.8e-06    0.0054       1      38 [.      37      76 ..      37      80 .. 0.82
   2 ?   -3.1   0.0       2.3   2.6e+03     160     204 ..     168     216 ..     153     218 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.8e-06
                    EEEEE--SHHHHHHHHHHHHH..TTTSSEEEEEE-SSS-- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalaka..lkgklevtlveseeigt 38
                    ++vivGGG+aG   A+al+    l++++++ lve+ ++ +
      CDO72085.1 37 DVVIVGGGPAGLALATALSSNslLRDTMKIVLVEAGDLSK 76
                    69***********99999864215666*******988765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
                     HHHHHHHCT-EEEE-.-EEEEEE-T...TS-EEEEEETTS-EEE-SEEE CS
  Trp_halogenase 160 LrrvaearGvtrveg.kvvevqlde...dgrveslrledgreveadlfi 204
                     Lrr      v++ +  kv+++q +e    g    ++l+dgr++  +l +
      CDO72085.1 168 LRRLHDTSAVEIADKvKVQSIQREEregGGGWPLVHLSDGRVLRTRLLV 216
                     4444444444433321233333332212455566777777777777766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.6   1.5e-05     0.017       1      21 [.      37      57 ..      37      78 .. 0.86
   2 ?   -1.5   0.0      0.88   9.8e+02     134     172 ..     153     193 ..      99     212 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                   SEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaea 21
                   Dv+++G+G AGLa A++++ +
     CDO72085.1 37 DVVIVGGGPAGLALATALSSN 57
                   9***************99875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.88
                    ......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTT CS
  FAD_binding_2 134 r.etlvtghallarlvesarkag.vdfqerteadeLivedg 172
                    +  t+++  +l  +l++++ +   v++ ++ +++++ +e++
     CDO72085.1 153 QmSTMTENLNLQRALLRRLHDTSaVEIADKVKVQSIQREER 193
                    33444555555556666665555577877777777777654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   2.4e-05     0.027       2      31 ..      37      71 ..      36     218 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
                 SEEEE--SHHHHHHHHHH.....HHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisa.....akrgkrVlllek 31
                 dv+++GgG+AGl  A ++      +   +++l+e+
   CDO72085.1 37 DVVIVGGGPAGLALATALssnslLRDTMKIVLVEA 71
                 8***********99988822222233455666665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.3e-05     0.025       1     129 [.      37     194 ..      37     199 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaA.....araGakvlLveergvlGGlltsglvatdignkaee.qvvtgiareflerlrq..rgga......rlkkrskwn. 82 
                   Dvv+vGGgpaG+a A a       r   k +Lve  +       + + ++  g+++++ + +t   + fl+++ +  +         ++ + + w  
    CDO72085.1  37 DVVIVGGGPAGLALATALssnslLRDTMKIVLVEAGDL---SKVANWTQP-AGTYSNRvSSITNASQSFLQEIGAwsH--VeesrtcPIDEMQIWDg 127
                   9**********987776411222466779999998665...344444444.444444458888888888888877431..22222332223333314 PP

  FAD_oxidored  83 ....................tfepevakavleeml.aeagvtvllntrlvevekegkriesvtveske 129
                                       +  p+ + ++ e++  ++a ++ l++t +ve+  +  +++s++ e++e
    CDO72085.1 128 vsdaritfsihddhalgvagAEAPSQMSTMTENLNlQRALLRRLHDTSAVEIADKV-KVQSIQREERE 194
                   45666667766777766666666666666666665566667777777776666653.67777766655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00039      0.43       2      20 ..      38      56 ..      37      82 .. 0.76
   2 ?   -0.1   0.0       1.3   1.4e+03      44      70 ..     165     192 ..     151     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
                EEEECSSHHHHHHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalae 20
                vv+vGgG  gl lA+al+ 
  CDO72085.1 38 VVIVGGGPAGLALATALSS 56
                8****************54 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHT.TEEEECSEEEEEEEEET CS
   Pyr_redox  44 kilqeklekn.gievllntkveeiegse 70 
                 ++l ++l +   +e+  + kv++i+ +e
  CDO72085.1 165 RALLRRLHDTsAVEIADKVKVQSIQREE 192
                 5555555555478888888888887665 PP

>> Lsm_C  Lsm C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.68   7.6e+02      21      31 ..      32      42 ..      12      44 .. 0.72
   2 ?   10.1   0.0   0.00047      0.52       8      37 ..     157     186 ..     153     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.68
                EETTTTEEEET CS
       Lsm_C 21 vieeanvvvvl 31
                 ++e++vv+v+
  CDO72085.1 32 AHQETDVVIVG 42
                5799*****97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00047
                 HHHHS...TTTEEEETTTTEEEETTTEEEE CS
       Lsm_C   8 vekelnlrpglVkvieeanvvvvldrikVs 37 
                 ++ +lnl+++l +   ++++v++ d++kV 
  CDO72085.1 157 MTENLNLQRALLRRLHDTSAVEIADKVKVQ 186
                 567899**********************95 PP

>> DUF4147  Domain of unknown function (DUF4147)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.13      19      69 ..      17      72 ..       4     110 .. 0.68
   2 ?   -3.1   0.0       4.1   4.6e+03     123     144 ..     148     169 ..     144     177 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                HHTTHHHH--.........-SEEEEEESTTHHHHHHHHH..HHHG..EEEEEEETT CS
     DUF4147 19 vkralslkee..eldlskkkrvvvvgaGKAaaamaaalee.ealk..sgvvvvkkg 69
                ++r  +l+++  +++ +++++vv+vg G A +a+a al++ + l+   ++v v+ g
  CDO72085.1 17 IRRSNTLRRRfaSTTAHQETDVVIVGGGPAGLALATALSSnSLLRdtMKIVLVEAG 72
                4444333333556777899****************999985444444455666544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.1
                 S--B-TT--HHHHHHHHHHHHH CS
     DUF4147 123 laaPaegitledkqaltkaLla 144
                  +aP++  t+++  +l++aLl+
  CDO72085.1 148 AEAPSQMSTMTENLNLQRALLR 169
                 5778888888888888888887 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00024      0.26       2      34 ..      35      70 ..      34      80 .. 0.83
   2 ?   -3.2   0.0       3.1   3.5e+03     287     310 ..     169     192 ..     157     196 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
  K_oxygenase  2 ilDligiGiGpsnLsLailleevk...kelkalfle 34
                   D++++G Gp+ L+La +l++++   +++k++ +e
   CDO72085.1 35 ETDVVIVGGGPAGLALATALSSNSllrDTMKIVLVE 70
                 57******************9998776666666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.1
  K_oxygenase 287 qkvkgeerlrllpnrevesaeaeg 310
                  +++++++ +++  +++v+s+++e+
   CDO72085.1 169 RRLHDTSAVEIADKVKVQSIQREE 192
                  566677778888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1607.26
//
Query:       CDO72086.1  [L=179]
Description: hypothetical protein BN946_scf184962.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-06   27.1   0.0    2.2e-06   26.7   0.0    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
     0.0048   16.9   0.1     0.0068   16.4   0.1    1.2  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.5e-10   2.2e-06     339     382 ..      38      81 ..      28      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.5e-10
       UDPGT 339 PktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeak 382
                 P t+  +tH+G n+v+E +++G+ +++ P+  dq+ N+ ++++ 
  CDO72086.1  38 PATGWCLTHGGHNTVLECVHSGILIIIWPIAVDQPSNAMHLTHN 81 
                 7888899*********************************9986 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   7.6e-07    0.0068      75     118 ..      42      81 ..      30      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.6e-07
                      EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHH CS
  Glyco_tran_28_C  75 LvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakeleka 118
                       +++++G++t++E+++ g   I+ p       +q  Na+ l+++
       CDO72086.1  42 WCLTHGGHNTVLECVHSGILIIIWPIAV----DQPSNAMHLTHN 81 
                      689***************9998888877....9*****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1210.37
//
Query:       CDO72087.1  [L=129]
Description: hypothetical protein BN946_scf184962.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 945.68
//
Query:       CDO72088.1  [L=2232]
Description: hypothetical protein BN946_scf184962.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-253  843.7   0.0   1.5e-253  843.4   0.0    1.1  1  ACC_central      Acetyl-CoA carboxylase, central region
   2.6e-173  577.2   0.0   3.4e-173  576.8   0.0    1.1  1  Carboxyl_trans   Carboxyl transferase domain
    6.7e-53  179.3   0.0    1.6e-52  178.1   0.0    1.6  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.9e-30  104.6   0.1    8.4e-30  103.6   0.1    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    4.9e-21   74.8   0.0    3.1e-20   72.3   0.0    2.4  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    2.2e-13   49.8   0.0    4.5e-13   48.8   0.0    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme
    0.00019   21.5   0.0    0.00071   19.7   0.0    1.9  2  ATP-grasp_3      ATP-grasp domain
    0.00044   19.9   0.0    0.00099   18.7   0.0    1.5  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
  ------ inclusion threshold ------
      0.034   13.7   0.1      0.076   12.6   0.1    1.5  1  ATP-grasp        ATP-grasp domain
      0.041   13.6   0.0        0.1   12.3   0.0    1.6  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
       0.11   12.6   0.1        1.1    9.3   0.0    2.6  3  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
       0.14   12.0   0.0       0.64    9.9   0.0    2.1  1  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> ACC_central  Acetyl-CoA carboxylase, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  843.4   0.0    1e-256  1.5e-253       1     733 []     747    1466 ..     747    1466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 843.4 bits;  conditional E-value: 1e-256
                   EESXCCCXXXXEBXXSXXXXXX-SS.STTSCHHHHHHHHCHHHHHHHHT-SHTTTCCHHHHHHHHHHTSTCHHHHHHHHHHCCCTTTS-HHHHHHH CS
  ACC_central    1 eLDDpskVkkaepFegqlpelgsptsvvgekphqrlaallsaleniLaGYdnqakiketlkeLievLrdpeLPllelqevlsalsgrlPakleksl 96  
                   +LDDp++Vk+a+pFeg lp+lg+p+ vvg+kphqrl+ +l++l+niL+GYdnqa +++tlk+LievL++peLP++e++++ls+lsgr+P+kle+++
   CDO72088.1  747 TLDDPARVKHAKPFEGLLPPLGTPS-VVGNKPHQRLHFYLDVLNNILDGYDNQAVMAQTLKDLIEVLENPELPFSEVSAILSTLSGRIPNKLEDAI 841 
                   69***********************.********************************************************************** PP

                   HHHHHHHHHC..T..SS--HHHHHHHHHHHCTT-TTTTTTTTHHHHSHHHHHHHCCCTTCCHHHHHHCCCCCCCHHHHHHHHHT.ST-HHHHHHHH CS
  ACC_central   97 rkelekaasnitsvlaeFPakqlrkildsflaeltkkadrevlealvqplvqlverYrnGlkghelsvvlsLLeeYlevEklFqdgsreedvvlkL 192 
                   r+ ++ a+s+ ++  aeFPa+++rk++d+f++++++ +dr+++++++ pl+++verY++Glk+he +++++LL +Y e+EklF  gs  e  vl+L
   CDO72088.1  842 RSAIDLAKSKGEG--AEFPAARIRKLIDHFMEDNVRPQDRTMFRTQLGPLMDVVERYQGGLKAHETDIIAGLLAKYEETEKLFG-GS-IEARVLTL 933 
                   **********666..********************999*********************************************7.66.9******* PP

                   HHH-STCHHHHHHHHHHHHTHHHHHHHHHHHHHHCHCCCCHTCCCCCCCHHHHHCCCT--STTTHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH CS
  ACC_central  193 ReknkddlakVvdivlShsqvskKnkLilalldelkpekpssselakelrevLkkLasLesketskVaLkArevLiqaklPsleerknqmesilks 288 
                   Re++kd+l+kVv++vlSh  + +K  L++a+l+++k++  ++++ +++l +vL+ La+Le++++++V+LkArevLi++++Ps+eer +qme il+ 
   CDO72088.1  934 REQYKDNLDKVVSLVLSHIMAHRKGRLVMAILEHVKNRGMTVTDPNSRLYQVLQGLAALEARSSTQVSLKAREVLISCQMPSYEERRAQMEGILRA 1029
                   ************************************9999999***************************************************** PP

                   HHSBSSTTSS-...SS--HHHHHHHHT-SS-SHHHHCCCCCSSSHHHHHHHHHHHHHHHTTTSEEEEEEEEESS......STCEEEEEEE-T---T CS
  ACC_central  289 svdesgygesk...repslevlkeLidsettvfDvLpsfFyhsdevvrlaalevYvrraYraYelksiqhheeee.....splivewqFklpsshs 376 
                   s+ +s yges+   r ps +vl eLids++tv+DvLp+f++ +++ +  aalevYvrraY+aY+l s++++e +       p +++w+F+l +shs
   CDO72088.1 1030 SISNSYYGESGspaRVPSTDVLHELIDSRYTVYDVLPTFWNYTNQEIVHAALEVYVRRAYKAYTLLSVDYEEGDGlddgeAPNVLTWRFNLGQSHS 1125
                   ************************************************************************9989999999**********9998 PP

                   CGCSSS--SSSSS-B--TT-EEESSTTTS--S-SSSS--EEEEEEEESSCCGHHHHHHCHHCTS-----------....-----------EEEEEE CS
  ACC_central  377 eeksasssstsssesesskriasvsdlsslsskseeepkrtGvmvafksledleealdevleefeeskksesseekeeeeeesssseepinvlnva 472 
                   + ++         +se  +r+asvsdl++++s+++++p rtG++++f +le l++ +d+v ++++  +       ++e +++   ++ep nvln a
   CDO72088.1 1126 PPSTP------RLQSEAPRRQASVSDLTYMISAHHKQPLRTGAIASFPNLEALKRGFDKVASALPVFD-------PQEYQQRYGANNEPPNVLNMA 1208
                   76554......34566666899******************************************7733.......33455667889********** PP

                   ECETTT-S...CCCCCCCCHHHHHHCCCHHHHTTEEEEEEEE--TS---EEEEEET...TTEEECTTCTS-CCCHHHCTCCCGTTEEEEEE--SST CS
  ACC_central  473 irsaenad...deellekleeilkelkeeLeaagvrrvTfivgrkgeyPkyfTFre.rdeykEdeiiRhiEPalafqLELnrLsnfdikpvptenr 564 
                   +r  ++a+   d+++ ek+ e+++ +++ L ++gvrrv+++++r g+yP y+T r  + +++E+ +iRhiEPalafqLEL+rLsn++++p++te++
   CDO72088.1 1209 LRIFNEAEdmsDDAWYEKIVELVNGHRDVLTRRGVRRVSILICRPGQYPVYYTLRDmNGSWQEETAIRHIEPALAFQLELSRLSNYTLTPCFTESK 1304
                   **666666567999******************************************9899************************************ PP

                   TEEEEEEEESS-T....T-EEEEEEEEE-BSS--TTS-HHCHHHHHHHHHHHHHHHHHHH...C--TTBSSEEEEEEEEEEESS-HHHHHHHCCCH CS
  ACC_central  565 qiHlYeavakeeekkevtdkRfFvRaiirhsdlrdkeasaeyliseaerlllealdeLEvaskkeakrtdlnHiFlnfvpeveldpeeveeavrsf 660 
                   q+H+Y+avake++     d+RfF+Ra++r++++r+++++a+ylise++rl++++ld+LEv +++e++++d+nHiF+nf++++ +++e+v ea+++f
   CDO72088.1 1305 QLHIYHAVAKENQ----LDNRFFIRALVRPGRIRGTMNMAKYLISETDRLVTTILDALEV-VSAEHRNADCNHIFMNFIYNLPVTYEDVLEAISGF 1395
                   *************....*******************************************.9999******************************* PP

                   HHHHHHHHHHTTEEEEEEEEEEC-TTT-SEEEEEEEEEETTSSCEEEEEEEEEE-TT.SSEEEEESST-STTS CS
  ACC_central  661 lerygkRlwrLrVlqaEirivirlsetgkaiplRlvitnesGyvlkielYkEvkdektgevvfksigkkgplh 733 
                   +er+gkRlwrL+V+++Eir+v+++ ++g+ +p+R+vi+n+sG++++++ Y+E++++k g++++ksig+kgplh
   CDO72088.1 1396 IERHGKRLWRLHVTGSEIRMVLED-KDGNVTPIRCVIENVSGFIVNYHGYQEITTDK-GTTILKSIGEKGPLH 1466
                   ***********************7.777778**************************.*************99 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  576.8   0.0  2.3e-176  3.4e-173       1     491 [.    1564    2115 ..    1564    2118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 576.8 bits;  conditional E-value: 2.3e-176
                      SSCTTCEEEEEEEEHTTSGGGEBEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEE...ECHHHHHHH CS
  Carboxyl_trans    1 kehprGkltareridllldpgsFgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgek...llkaqeeai 90  
                      +e+p+G++ + +++d+++++gsFg+ edlff+ +++++r+++lpr++++++sGa+iG a+e +  ++++++++  p+kg++   l+ ++++++
      CDO72088.1 1564 PEYPEGRRAVAIANDITFKIGSFGPAEDLFFYLASQYAREHGLPRIYLSANSGARIGLAEEALNLFSVAWNDPEHPEKGFNylyLTHENYLKL 1656
                      69*******************************************************************************777666666666 PP

                      HH..............TEEEEEEEEE-ES.SSGHHSSHHHHHHHHHHHHHHHHHHHCS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEEES CS
  Carboxyl_trans   91 ka..............gepligindsgGa.egriqegveslrgsGkifgenskasgeIpqislvtgrcaGggaYlpalgdrvimveetskifl 168 
                      ++               e +++i+d++G  +g   +gve+l+gsG i+ge+s+a+++I++i+lvt r++G+gaYl++lg+r+++ve+ ++i+l
      CDO72088.1 1657 QEkaagavrtveieenSERRHKITDIIGLqDG---LGVECLKGSGLIAGETSRAYDDIFTITLVTARSVGIGAYLVRLGQRAVQVEG-QPIIL 1745
                      6699999*********9************666...****************************************************.***** PP

                      STHHHHHHHHSSCC-SSCHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----ECSSGSSSH..HCS-CTTTS---HH CS
  Carboxyl_trans  169 tGpdvikkvlgreevtseelgGatqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivetadepdrdlieivPdnakkpyDvr 261 
                      tG+++++kvlgre++ts+ ++G+tq+m+k+Gv+hlta++d+e+ + i ++lsy+P+++    ++ Pi++ ad++dr+ i ++P+  k pyD+r
      CDO72088.1 1746 TGAPALNKVLGREVYTSNLQLGGTQIMHKNGVSHLTASSDLEGAAHILDWLSYIPEQKG---APLPILDLADPWDRE-IGYIPP--KGPYDPR 1832
                      *******************************************************5555...5*************7.******..9****** PP

                      HHHHCEEC............TTC-EEESTTSSTTEEEEEEEETTEEEEEEEE--S....................EEETTEE-HHHHHHHHHH CS
  Carboxyl_trans  262 eviarlvd............egeFlEikegyAktvVvGfArlgGipvGvvAnetr....................veaGqvlfidsavKaarf 322 
                      ++i++++d            +g+F+E+++g+A+tvVvG+ArlgGip+Gv+ +etr                    +eaGqv++++sa+K+a++
      CDO72088.1 1833 WLIEGKTDeatndwlpgffdRGSFQETLSGWAQTVVVGRARLGGIPMGVITVETRtierivpadpanpssfeqriMEAGQVWYPNSAYKTAQA 1925
                      ********************************************************************************************* PP

                      HHHHHHTT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE-T..EEEHHHHHTTTGGGSTTTTE.EETTT-EEESS-HHH CS
  Carboxyl_trans  323 irlcdaenlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitvilr..kayGGayvvmdskingadlv.aawptariaVlgpeg 412 
                      i ++++e lPl+i+a++rGf++Gq+++y++ilk+G+k+vd+l+++++P++++i++  +++GGa+vv+d++in++++  +a+ +ar+++l+peg
      CDO72088.1 1926 IFDFNREGLPLIIFANWRGFSGGQQDMYDEILKQGSKIVDGLSSYRQPVFVYIVPngELRGGAWVVLDPSINSEQMEmYADVEARAGILEPEG 2018
                      **************************************************************************65489999*********** PP

                      HHHHHSHHHHHHHHHHH................HHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHTTSSSEEEHGGGH CS
  Carboxyl_trans  413 aveilfrkekaaaemer................kdlaae......rkkklkeyeeellnpyvaaargfaDavidpsetraklvialelewkka 483 
                      +vei+ r++k  ++mer                k    +      +++ l+++e  l++ y+++a+ +aD++++++++ ak++++  + ++++
      CDO72088.1 2019 IVEIKMRRDKILKTMERldatyanlkkdstdasK----TpeeraaATEALAQREALLMPTYKQIALLYADLHDRTGRMEAKGCAKPMVWKDAR 2107
                      *****************99999877766655541....155556699***********************************98776666666 PP

                      HHHHHHHH CS
  Carboxyl_trans  484 rklparkr 491 
                      r +++  r
      CDO72088.1 2108 RRFYWAVR 2115
                      69**9877 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1   0.0   1.1e-55   1.6e-52      22     209 ..     207     390 ..     190     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.1 bits;  conditional E-value: 1.1e-55
                  SSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCEC CS
  CPSase_L_D2  22 apvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql 119
                  a v+t+ee la a++igyPv+ika+ g+GGkG r +++ + +++++++   e +     + +++ k   + +++Ev++l+D++gn+i ++ r++s+q+
   CDO72088.1 207 ACVTTVEEGLARAEQIGYPVMIKASEGGGGKGIRKVESADAFKNAFHAVAGEIP----GSPIFIMKLAGQARHLEVQLLADQYGNAISLFGRDCSVQR 300
                  3489**************************************999998888885....789************************************* PP

                  TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GC CS
  CPSase_L_D2 120 rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLe 209
                  r+qk+ie+AP    ++e+++++++aav++++ vg+v+agtve+l+++ ++ +y++E+N+Rl+ve++ +e++ G++l +++++ia+g++L+
   CDO72088.1 301 RHQKIIEEAPVTIAKPETFEKMERAAVRLAKLVGYVSAGTVEYLYSHAEDVFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPLH 390
                  ****************************************************************************************97 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.1   5.6e-33   8.4e-30       2     110 .]      39     158 ..      38     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 5.6e-33
                    --EEEE---HHHHHHHHHHHHHT.........T-EEEEEEEGG..GTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTT CS
  Biotin_carb_N   2 ikkvlianrGeiAvriiravrel.........gietvavysee..danslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGfls 86 
                    i+kvlian+G +Av+ ir++r++         +ie+++++++e  + n++++r+ad++ve+++++++++Y+n++ iv++a+++g++av+ G+G++s
     CDO72088.1  39 ITKVLIANNGIAAVKEIRSIRQWsyetfgterAIEFTVMATPEdlKVNAEYIRMADRYVEVPGGTNNHNYANVDLIVDVAERAGVHAVWAGWGHAS 134
                    78******************************9********994456899********************************************** PP

                    T-HHHHHHHHHTT-EESSS-HHHH CS
  Biotin_carb_N  87 EnaefaeaveeagivfiGPsaeal 110
                    En++++ea+++++ivfiGP+ +a+
     CDO72088.1 135 ENPRLPEALAANKIVFIGPPGSAM 158
                    ********************9987 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   2.1e-23   3.1e-20       2     107 ..     434     540 ..     433     541 .. 0.99
   2 ?   -1.5   0.0       1.8   2.7e+03       7      33 ..     674     701 ..     669     721 .. 0.75

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2.1e-23
                    EEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEES.S-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   2 aRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieG.vktnieflrailedeef 96 
                    +Ri+aE+p+ +f pssG ++el++ ++++v+ + +v++    ++y Ds +++++++ge+r+e  +++  aL+el i+G ++t++e+l ++le ++f
     CDO72088.1 434 VRITAENPDAGFKPSSGSLQELNFRSSTNVWGYFSVNSAGGLHQYADSQFGHIFAYGEDRSESRKNMVVALKELSIRGdFRTTVEYLIKLLELQAF 529
                    8*********************************************************************************************** PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    ++++++t++l+
     CDO72088.1 530 EENTITTGWLD 540
                    *********98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                    E.ETTTTTEE--CE-SEEE---STTEEE CS
  Biotin_carb_C   7 E.dpeknflpssGkvtelelpegpgvRv 33 
                    E dp++  +ps+Gk+ ++ + +g ++  
     CDO72088.1 674 EnDPTQLRSPSPGKLVRFLVESGDHINA 701
                    558888899********99998887755 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0     3e-16   4.5e-13       2      72 ..     679     745 ..     678     746 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 3e-16
                    EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEEC..TTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveegvvevlvkvGdkVkagqvlaevea..mKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    +++sP++G++v+     +lv+ Gd+++ag+ +ae+ea  mKm m++ a ++G+v+ ++++ G ++e gd+l +
     CDO72088.1 679 QLRSPSPGKLVR-----FLVESGDHINAGEQYAEIEAcvMKMYMPLVASEDGIVQFVKQP-GVSLEPGDILGI 745
                    89**********.....*******************777*********************.*********976 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   4.8e+03      85     126 ..      79     120 ..      67     122 .. 0.82
   2 !   19.7   0.0   4.7e-07   0.00071      26     159 ..     218     362 ..     195     364 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.2
                  SEEEEEEEEEEEET....TEEEEEEES----HHHHHHHHHHH CS
  ATP-grasp_3  85 kvlvlavnrqliekaekefvyaGnvtpietelkeevvelaee 126
                  +  +l vn ++i +a + +   G++ + ++ + + +v++ae+
   CDO72088.1  79 TPEDLKVNAEYIRMADRYVEVPGGTNNHNYANVDLIVDVAER 120
                  5678999*****999999999999999999999999999887 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.7e-07
                  ESS--SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEEEEEEEE.EET....TEEEEEEES-- CS
  ATP-grasp_3  26 eleeeekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvlavnrql.iekaekefvyaGnvtpie 113
                  ++e+  +++ +K ++G+gg+++r+ve  ++ ++a++ v+         +++   + ++l v+ll+d+  + +  + r   +++++++++    vt ++
   CDO72088.1 218 RAEQIGYPVMIKASEGGGGKGIRKVESADAFKNAFHAVAgeipgspifIMKLAGQARHLEVQLLADQYGNAISLFGRDCsVQRRHQKIIEEAPVTIAK 315
                  5667799**********************999999988889999997777777778899999999988877777766651444444444444444444 PP

                  --HHHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3 114 telkeevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                   e  e+++++a ++ + + g ++   v+ +++   +  y++E NPRl+
   CDO72088.1 316 PETFEKMERAAVRLAKLV-GYVSAGTVEYLYSHaeDVFYFLELNPRLQ 362
                  444555555555554444.55555557777666446789*******97 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.6e-07   0.00099      32     173 ..     219     358 ..     198     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.6e-07
                      HHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC.TT- CS
  Dala_Dala_lig_C  32 eeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakysddka 122
                       e++gypv++K+++ G   G+ kves++ +k+a+++ +     + +++ +   ++r +ev +l ++  ++ ++  +    ++ + ++k + ++a
       CDO72088.1 219 AEQIGYPVMIKASEGGGGKGIRKVESADAFKNAFHAVAGEipGSPIFIMKLAgQARHLEVQLLADQYGNAISLFGRD--CSVQRRHQKII-EEA 309
                      6899*****************************9986543225679999999999*****99996665544443322..23445555554.333 PP

                      EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEE CS
  Dala_Dala_lig_C 123 qlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvN 173
                       +++    ++e+ ek++ +a++  k+++    + v +++ ++e+ +++ E+N
       CDO72088.1 310 PVTI---AKPETFEKMERAAVRLAKLVGYVSAGTVEYLYsHAEDVFYFLELN 358
                      3322...245566677777777777777777777777775666777777777 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.1e-05     0.076      14     159 ..     209     360 ..     202     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.1e-05
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEEEEETTEEEE CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGe.tafypvvetvqedgilrl 107
                 v++ ee  + ae++g+pv++K +  g  GkG   v+s++  ++a++a+     + ++ + + +   + l v    ++ G+ ++ +     vq++    +
  CDO72088.1 209 VTTVEEGLARAEQIGYPVMIK-ASEGGGGKGIRKVESADAFKNAFHAVageiPGSPIFIMKLAGQARHLEVQLLADQYGNaISLFGRDCSVQRRHQKII 306
                 66777777888**********.666779***************99999888778899999999999988888888888874556666666777766666 PP

                 EEECEE-SCH.HHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS CS
   ATP-grasp 108 svapaevsek.aqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapR 159
                   ap ++ +    +k e+ a ++++ +g+v   +vE  + + ++  ++ El pR
  CDO72088.1 307 EEAPVTIAKPeTFEKMERAAVRLAKLVGYVSAGTVEYLYSHAEDvFYFLELNPR 360
                 6777776554277889999999********9999**999877776789999999 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.9e-05       0.1      47     119 ..     320     395 ..     290     404 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.9e-05
  ATPgrasp_Ter  47 eelielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlgys.alaGvnlpylalklllgleteeveep 119
                   e++  +a rla+ +g      v + + +++   + LE NpR +     + +++Gvnlp + l+ ++g + + +++ 
    CDO72088.1 320 EKMERAAVRLAKLVGYVSAGTVEYLYSHAEdvFYFLELNPRLQVEHPTTeMVSGVNLPAAQLQIAMGIPLHRIRHI 395
                   445556666777777666666776666655569**********9988773678*************9876666655 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00074       1.1      18      75 ..     162     216 ..     159     221 .. 0.93
   2 ?   -1.1   0.0       1.4     2e+03      39      66 ..     654     682 ..     648     684 .. 0.78
   3 ?   -3.7   0.0       8.4   1.3e+04      21      56 ..    2158    2195 ..    2157    2196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00074
      Fer2_4  18 GdtvasAllangvdvprsckygrprgelcaggeCrnClVevegepnvracstpvedGl 75 
                 Gd++ s + a+++dvp++ ++g     ++    ++   V+v ++   +ac+t+ve+Gl
  CDO72088.1 162 GDKISSTIVAQSADVPTMAWSG---SGITKTVLDPAGFVTVPDDVYRAACVTTVEEGL 216
                 99*******************5...6789999*************************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
      Fer2_4  39 grprgelcaggeCrnClVevegepnv.ra 66 
                  ++ g l  +   ++Cl+e e++p + r+
  CDO72088.1 654 REEVGALRLMVDSKTCLIEQENDPTQlRS 682
                 4556888999999********99986465 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.4
      Fer2_4   21 vasAllangvd..vprsckygrprgelcaggeCrnClV 56  
                  +a+Al + + +  + ++ +++ +r +l    e+r++ V
  CDO72088.1 2158 IAQALENLDLTnsLAQLKADHLARRMLALAHEDRKATV 2195
                  77888877753225578889999999999999999988 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00043      0.64       3      28 ..     678     703 ..     674     710 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00043
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGd 28 
                      +++ +p +G++++ +V+ G++++aG 
       CDO72088.1 678 TQLRSPSPGKLVRFLVESGDHINAGE 703
                      6899*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.51
# Mc/sec: 13115.98
//
Query:       CDO72089.1  [L=106]
Description: hypothetical protein BN946_scf184962.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-44  149.7   0.4    2.3e-44  149.5   0.4    1.0  1  Ribosomal_L35Ae  Ribosomal protein L35Ae
    0.00046   20.4   0.0      0.089   13.0   0.0    2.2  2  RimM             RimM N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L35Ae  Ribosomal protein L35Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.4   2.5e-48   2.3e-44       1      95 []       6     100 ..       6     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 2.5e-48
                      -EEEEEEEEEE--SSSSS-EEEEEEESS--SHHHHHCCTT-EE..EEE-......TTT-EEEEEEEEECTTTTEEEEEETT--SSS-TT-EEEE CS
  Ribosomal_L35Ae   1 LyvkavflgykrgkrnqrentaLlkiegvkskeeaefylGkrvayvykakkkkkgskvrviwGkvtrahGnsgvvrakFkknLppkaigarvrv 94 
                      Ly+k+++lg+kr+krn+r+nt+Ll+iegv +k++a+fylGkrvay+y+ak++ +gskvrviwG++tr+hGnsg+v++kF++nLpp+a+ga+vrv
       CDO72089.1   6 LYAKGRVLGHKRAKRNTRPNTSLLQIEGVVTKKDAQFYLGKRVAYIYRAKREIQGSKVRVIWGRITRPHGNSGAVKSKFRSNLPPHAFGASVRV 99 
                      8********************************************************************************************* PP

                      . CS
  Ribosomal_L35Ae  95 m 95 
                      m
       CDO72089.1 100 M 100
                      9 PP

>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0019        17      51      78 ..      21      48 ..       2      55 .. 0.76
   2 !   13.0   0.0     1e-05     0.089       2      29 ..      67      94 ..      66     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
                EEETTEEEEEETT--SHHHHHTTTT-EE CS
        RimM 51 rvhkkgvivklegvddrdaAealkgael 78
                +++ ++ ++++egv +  +A+ + g ++
  CDO72089.1 21 NTRPNTSLLQIEGVVTKKDAQFYLGKRV 48
                355999**************99999888 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1e-05
                EEEEEEEETTTTEEEEEE-SSSGGGGGG CS
        RimM  2 vGkIvgahGlkGevkVkpftdfpealfk 29
                 G+I+++hG  G vk k  ++ p + f 
  CDO72089.1 67 WGRITRPHGNSGAVKSKFRSNLPPHAFG 94
                59*************9999987666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 740.13
//
Query:       CDO72090.1  [L=473]
Description: hypothetical protein BN946_scf184962.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-149  497.2   0.0   2.6e-149  497.0   0.0    1.0  1  ArgJ      ArgJ family


Domain annotation for each model (and alignments):
>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.0   0.0  1.5e-153  2.6e-149       3     376 .]      50     473 .]      48     473 .] 0.94

  Alignments for each domain:
  == domain 1  score: 497.0 bits;  conditional E-value: 1.5e-153
                 EEEXXSSS....SXXEEEEEEEE..EEEEEEEEEXXSSXXHHHHHHHHHHH.HHS.EEEEEEEEEEXXXSXHHHHHHHHHHHHHHHHHHHTSX..GGGE CS
        ArgJ   3 agvaagikkk..kkdlalivsee..pasaaavfTknkvkAapvkvsrevlkkkkg.aravvvnsgnANavtgeqGledaeemaeavaealgik..eeev 94 
                 +g+++g+kkk    dla+i+s++  p+saaa+fT+n++kAapv vs+evl++++g aravvvnsg+ANavtg+qG+eda++m++a++++l  +  ++e+
  CDO72090.1  50 TGLHCGVKKKpeLLDLAVILSNSsrPTSAAACFTRNAFKAAPVIVSQEVLQSSSGrARAVVVNSGCANAVTGKQGMEDAWAMVRATDSLLPNPpsSSET 148
                 689*****776799*****98765599************************99988**********************************6553366** PP

                 EEEEEEESSXXXXHHHHHHHHHHX....X..........HHHHHHHXSSXSSXXEEEEEEEE.TEEEEEEEEEEXSSSXXXXE..............E- CS
        ArgJ  95 lvasTGviGerlpmekieagieklvekle..........eeaaeAimTTDtvpKlaavevel.gkevtiagiaKGaGmihPnm..............aT 168
                 lv+sTGviG++lp+ ki+agi++l    e          e+aa+A+mTTDt+pKl+a+++++ gke+++ag+ KGaGmihP+m              aT
  CDO72090.1 149 LVMSTGVIGQTLPIAKILAGIRALGPGKEgilgstfeawERAARAFMTTDTFPKLRARTFTInGKEYRMAGMDKGAGMIHPDMgppapsatsagqlhAT 247
                 **********************999765467778888999**********************889********************************** PP

                 -EEEEEE-----HHHHHHHHHHHHHHTGGGB-SSS---SS-EEEEEE--TT..........TT.STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEE CS
        ArgJ 169 mLafittDaavsaealqellkeavdksFnsisvDgdtSTnDtvlllAngaa..........eeeeedleefeealtevlqeLakqivrDGEGatklvev 257
                 +L++i+tDaavs+++lq++l+ avd+sFnsisvDgd+STnDt+++lAngaa          e++ e++e+f+++lt+++++Lak +vrDGEGatk+v+v
  CDO72090.1 248 LLGCILTDAAVSPRSLQSALTYAVDRSFNSISVDGDMSTNDTIIVLANGAAtaaeeaeideERHPEAYETFKQELTAFAADLAKLVVRDGEGATKFVTV 346
                 **************************************************77899999985444899******************************** PP

                 EEEEESSHHHHHHHHHHHHT-HHHHHHHHTT---HHHHHHHHHHSS..S---TTS-EE........TTEEEEETTEE----HHHHHHHHH-SSEEEEEE CS
        ArgJ 258 eVkgakseeeAkkvaksvanssLvKtAlfGeDanwGRilaavGyag..aeldpekvsv......llgevkvlekgepeevdeerakeilkeeeveievd 348
                 +V+ga+++++A++va+ +++s+LvKtAlfGeDanwGRilaa+G+ +  a+ldp++v+v       +  + +l +gepe+vde rakei+++e++ei+v+
  CDO72090.1 347 TVEGAPTYKDAHRVASRISTSALVKTALFGEDANWGRILAATGSIPlsAPLDPTRVNVsfipadGTAPLPLLVNGEPEKVDEVRAKEIISQEDLEIKVE 445
                 *********************************************76688********8887764466******************************* PP

                 --SSSEEEEEEEE---HHHHHHHTT-XX CS
        ArgJ 349 lgegeeeatvwtcDLsyeYvkiNadYrt 376
                 lg g+e+a++wtcD+syeYv+iN+dYrt
  CDO72090.1 446 LGIGSESAKYWTCDFSYEYVRINGDYRT 473
                 ***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3343.92
//
Query:       CDO72091.1  [L=988]
Description: hypothetical protein BN946_scf184962.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-23   83.6   0.0    2.3e-23   82.8   0.0    1.4  1  PH_10     Pleckstrin homology domain
    0.00011   22.5   0.0    0.00028   21.2   0.0    1.6  1  VWA       von Willebrand factor type A domain
     0.0014   18.6   0.1     0.0061   16.5   0.0    2.2  2  VWA_3     von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> PH_10  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   3.8e-27   2.3e-23       3     123 .]     228     353 ..     226     353 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 3.8e-27
       PH_10   3 fGeLllhdtltVkkdsdsereyevyLFekillcvkevkeekkkksksssllkkksssss............kkkktklqLKGrilisnvtevtssskpg 89 
                 +G L ++d l+V++ ++  re+ vyLF ++++cv e     +kk++  +ll+   + s             + ++  l+LKGri+i+++++vt++s +g
  CDO72091.1 228 LGPLQMYDLLSVRR-DNLVREFFVYLFREAIICVVE-----EKKRSLGRLLSSAGAASGfgdgsgsgsingSAQRGVLRLKGRIYIRHIRQVTDTSVAG 320
                 79************.*********************.....66666777777776666688899999999999************************** PP

       PH_10  90 syslqiswkgdkelesftlrfkneeqlkkWesal 123
                 + sl+i+++ d++l+sf+l fk++++l++W+s++
  CDO72091.1 321 ELSLTIDME-DERLDSFILIFKDRSSLETWKSHI 353
                 *********.777******************976 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.7e-08   0.00028      73     171 ..     566     662 ..     554     665 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.7e-08
                 GGGGSSC-HHHHHHHHHHHHHHHHGTSSTTSEEEEEEEESS--CSS..HTHHHHHHHHGCTEEEEEEEESSSHHHHHHHHHSSSSCHHCEEEESSHHHH CS
         VWA  73 ysgggttntgkalkyaleklfkssagaRenakkviilltdGksndg..dpkeaaneakeqgikvfavGvgnadekelLnkiasepgeghvftvtdfeel 169
                 +s+ ++t++ +a++++l+ +++++++   n +  ++l++d  ++    +++ ++++a ++++ ++++G+g  ++ + L  +++ ++ g++ +v+d+ +l
  CDO72091.1 566 TSPDEKTDVVTAVNNGLDVVLQRKQR---NPVTGFVLVSDASDTTRraQMDLVLARAEAANVPIHSFGYGRSHDPASLWLMSNHTS-GTYTFVKDWYDL 660
                 56677788******************...9**********88877448*********************99999998988877777.********9877 PP

                 HH CS
         VWA 170 ee 171
                 ++
  CDO72091.1 661 RD 662
                 65 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     1e-06    0.0061      82     155 .]     576     653 ..     506     653 .. 0.78
   2 ?   -2.9   0.1      0.95   5.6e+03      61      88 ..     879     908 ..     858     946 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-06
       VWA_3  82 gaLkealr...qpakpgevrsvilltDgssaqgeervsdlis.rar.ekirfhalglgsslsaamlqaLAeasgGtyef 155
                  a +  l+   q++++  v   +l++D s + +    +dl+  ra  +++++h++g g s+++a l +++  + Gty f
  CDO72091.1 576 TAVNNGLDvvlQRKQRNPVTGFVLVSDAS-DTTRRAQMDLVLaRAEaANVPIHSFGYGRSHDPASLWLMSNHTSGTYTF 653
                 55553333222455666677788888888.5555566777763344599****************************86 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.95
       VWA_3  61 lqealqkike.lels.lgasnlegaLkeal 88 
                 lq +lq i + l+++ +++s + +  ke+l
  CDO72091.1 879 LQTVLQNITQsLPPPnRDGSTTTRNRKEIL 908
                 333333333332222255555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6638.24
//
Query:       CDO72092.1  [L=303]
Description: hypothetical protein BN946_scf184962.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0027   18.0   0.3     0.0053   17.1   0.3    1.5  1  zf-RING_2     Ring finger domain
     0.0051   16.8   1.8       0.01   15.8   1.8    1.5  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
       0.31   10.8   2.1        1.2    8.9   2.1    1.9  1  zf-RING_11    RING-like zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   8.9e-07    0.0053       2      27 ..     137     168 ..     136     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.9e-07
   zf-RING_2   2 eCpICleelssadsvl.....llp.CgHvfhr 27 
                 eCp+Cle+lss+ +++     ++p CgH  h+
  CDO72092.1 137 ECPVCLEPLSSSFRLPgekphIVPeCGHALHE 168
                 9********9999966544444425***9996 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.8   1.7e-06      0.01       1      21 [.     138     167 ..     138     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
  zf-RING_UBOX   1 CpIClelft........dP.lvlpCGHtFC 21 
                   Cp+Cle+++        +P +v++CGH ++
    CDO72092.1 138 CPVCLEPLSssfrlpgeKPhIVPECGHALH 167
                   *************99998877768***876 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.1    0.0002       1.2       1      25 [.     137     167 ..     137     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0002
  zf-RING_11   1 eCsICLeefk.....pgq.alfilpCsHtFH 25 
                 eC +CLe++      pg+   ++++C+H+ H
  CDO72092.1 137 ECPVCLEPLSssfrlPGEkPHIVPECGHALH 167
                 8*****9876444466673557888***988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2009.39
//
Query:       CDO72093.1  [L=602]
Description: hypothetical protein BN946_scf184962.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-28  100.0   0.0    1.6e-28   99.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
        0.1   12.9   1.5       0.37   11.1   0.3    2.4  2  DUF4129         Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   1.8e-32   1.6e-28     131     407 ..      79     371 ..       3     372 .. 0.79

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 1.8e-32
  Pkinase_fungal 131 kaeeeketekleleeplarqraivgRgTtcwrarkegergkeyv.vKdsWrdaerk..sEaelLkkaeergvegvarlvahedveekdddi...a 219
                     + +++ + +++ + ++++    + gRgT+ + a      + ++v +Kd+Wr +     +E+++L++ ++ +v  v +l++h d+ +++ ++    
      CDO72093.1  79 EVPHDGRMHNFLVGKRVFCAPGMAGRGTRGFVALDAAAASVRFVwLKDAWRTNYMFvaPEGDVLQELNNVSVPYVPTLICHGDIPGQETQTptwW 173
                     66889999***************************99998999968*****8776455**************************95555554134 PP

  Pkinase_fungal 220 eiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssv.stskrsrlenrvhrrlvispvGkpiekaespkellealr 313
                     e ++ l + ++    s+  +vs  +s ++ss++ v++++ +s k+   +  +  + + ++  +l+   h r+v+++v+ ++ ++++  +ll+ + 
      CDO72093.1 174 ERKNPLPTPQP----STSPLVSPAQSIASSSRTLVNPRSLQSTKRSAYEMEEGASgNGREDCPLRCHKHYRIVVKEVAMKLVNFQDGHQLLSIIF 264
                     44555544444....5555666555555777777777777776666554444444555555557888999************************* PP

  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilit.......dskke...gerkglLiDLDlakelsddssesgarertGTleFmaievlkgee.....Hsy 393
                     +++ +h + +lka+i+HrDiS +Nili+       d+       + +glL+D +l k l+ +     +r+   T+  +ai v +  e      ++
      CDO72093.1 265 NCVCAHSEAVLKANIMHRDISGGNILILpkavvdpDD--GsidMRWTGLLVDWELSKPLKGEAGLPRPRQPERTVRDLAIHVRRRAEqprqeIEI 357
                     ****************************777775522..145599***************98888899***************964445555899 PP

  Pkinase_fungal 394 rhDLESffyvllwi 407
                      + LESff v l+ 
      CDO72093.1 358 SDELESFFHVTLYY 371
                     9*********9985 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.3   2.7e+03      11      35 ..       7      37 ..       3      65 .. 0.59
   2 ?   11.1   0.3   4.2e-05      0.37      14      51 ..     329     375 ..     322     383 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.3
     DUF4129 11 er.gldrrpg...eTprEyarrv..riapsp 35
                e+ gld+ ++       Ey++ +  r+ap++
  CDO72093.1  7 EAlGLDPTAHrvlPGSAEYVQMLkvRVAPEG 37
                5556666666333356788888888888873 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.2e-05
     DUF4129  14 ldrrpgeTprEyarrv.riapspaa......alaal..aelfeearY 51 
                 ++r+p +T r++a +v r+a +p++      +l+ +  ++l++++rY
  CDO72093.1 329 RPRQPERTVRDLAIHVrRRAEQPRQeieisdELESFfhVTLYYAVRY 375
                 366688*******9998776666664444446666678********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4201.95
//
Query:       CDO72094.1  [L=206]
Description: hypothetical protein BN946_scf184962.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1582.88
//
Query:       CDO72095.1  [L=343]
Description: hypothetical protein BN946_scf184962.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-10   39.5   0.0    6.3e-10   39.0   0.0    1.2  1  Asp            Eukaryotic aspartyl protease
  ------ inclusion threshold ------
       0.25   11.3   1.3       0.35   10.8   0.4    1.6  2  Protocadherin  Protocadherin


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0     7e-14   6.3e-10     194     309 ..      53     174 ..      41     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7e-14
                 EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET...TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGE.EEESSSTTSEEEESE....EECC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx....xxxx RF
         Asp 194 lcssgcqailDtGTsllalptsivekiakaigakkses...egeyvvdCdslsslpdisftiggakitvpvselv.lkeeeseesqCilgl....vsee 284
                 +++++++a lDtGTs + +p+  +e+i   i +++++    + +++v C+ ++ + + sf  gg  + + + +++ ++ +++++ +Ci  +     s++
  CDO72095.1  53 VTATSTAAELDTGTSGILAPSYYAEAIYGRIPGATQTMqgnSTYWLVPCN-IKMNITWSFA-GGFLYPMHPADVIdVQFNSNGTFSCIGTIfptdPSDD 149
                 577889999******************9998655554413346789****.5777788888.*******9999885777777789****9977543344 PP

                 TSSSEEEEHHHHTTEEEEEETTTTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 285 egdlwiLGdvFlrsayvvfdldnnr 309
                  +   iLG +Flr+ y ++d+++  
  CDO72095.1 150 PEFDFILGATFLRNTYQLYDYGDMS 174
                 44568****************9865 PP

>> Protocadherin  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   3.9e-05      0.35      32      72 ..     277     314 ..     249     318 .. 0.70
   2 ?   -1.9   0.0       0.3   2.7e+03     188     209 ..     319     340 ..     316     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.9e-05
  Protocadherin  32 slskdrlkiliavlaGvvtvilvilivvlvRycrqkaksgy 72 
                    s+ +   +i++a laGv+ v+l+++iv  +R  r++  +gy
     CDO72095.1 277 STLTRNANIILALLAGVF-VLLLVVIVLSIRASRAN--KGY 314
                    35567889********98.56666788889966655..555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.3
  Protocadherin 188 dNtFvgtgdslSkgSdqsSd.Ys 209
                    + tF  +gd++  +S+++S  Y 
     CDO72095.1 319 SATFA-GGDKTFEASESYSTpYD 340
                    56998.89**********98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2502.28
//
Query:       CDO72096.1  [L=469]
Description: hypothetical protein BN946_scf184962.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0069   16.6   0.3       0.14   12.4   0.2    2.3  2  COX7C     Cytochrome c oxidase subunit VIIc


Domain annotation for each model (and alignments):
>> COX7C  Cytochrome c oxidase subunit VIIc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   7.8e-06      0.14      23      57 ..     256     291 ..     241     294 .. 0.89
   2 ?    1.5   0.0      0.02   3.6e+02       3      31 ..     390     421 ..     388     429 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.8e-06
                 -STTTSSSS--SSH.HHHHHHHHHHHHHHHHHHHHH CS
       COX7C  23 egpysnLPFsknnK.ipfavkywgflgvgFalPFla 57 
                 ++p + +PF++ ++   f + +w++ g    +PF++
  CDO72096.1 256 PNPAHKVPFHVARRdRLFVITLWVVQGNMHIIPFIS 291
                 4699**********9*******************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.02
                 .XXXXXXXXXXX....XXXX-S--STTTSSSS CS
       COX7C   3 rlvarRafhtsar...srsghykegpysnLPF 31 
                 ++ arR++ +      +  g +k+ ++++LP+
  CDO72096.1 390 QQGARRKLVQEDDrafHPAGVFKDEVRTSLPY 421
                 5667888888774555556667799*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3269.87
//
Query:       CDO72097.1  [L=178]
Description: hypothetical protein BN946_scf184962.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-13   48.2   0.2    1.4e-12   47.7   0.2    1.3  1  HIG_1_N   Hypoxia induced protein conserved region
  ------ inclusion threshold ------
      0.018   15.1   0.5      0.025   14.6   0.5    1.2  1  DUF2076   Uncharacterized protein conserved in bacteria (DUF2
        2.2    8.7   6.5        3.7    8.0   6.5    1.3  1  Cgr1      Cgr1 family


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.2   2.3e-16   1.4e-12       1      52 []      33      84 ..      33      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 2.3e-16
     HIG_1_N  1 eeplvpiGilatvgalvrglrsmkrgdskqsnrlmraRiaaQaftvlalvaG 52
                e+p+vp+ +++t++ l+ ++ +++r+ds+ +n++ r R++ Q++t+ a+v+G
  CDO72097.1 33 ENPFVPVLAGLTTVSLIVAASKLRRRDSVSMNHWLRVRVVMQGLTICAVVGG 84
                79************************************************98 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.5   4.2e-06     0.025      61     113 ..     122     173 ..     111     178 .] 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.2e-06
     DUF2076  61 nariqeLeaqlqqlqqqaqeaqaqpssggFLsglFGggkkerpqpspqarpaa 113
                 ++ri++Le+++ +l+ qaq +  + s+ g ++g FG+g + + +++++++p+ 
  CDO72097.1 122 ADRIEKLEEEI-HLRGQAQTSGVAGSGSGWFGGWFGKGGSGSTPTAQSSTPSS 173
                 479********.7888888888899999*********9999444444444443 PP

>> Cgr1  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.5   0.00061       3.7      48      91 ..      92     135 ..      89     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00061
        Cgr1  48 klekeLkdekeaerqrrieaikerrkakeEkeRleelaakmhak 91 
                 k +ke  +  e+er   ++a ++r +a+eE  R+e+l++ +h +
  CDO72097.1  92 KHQKEAAAAAENERVLERAAFEARLRAAEEADRIEKLEEEIHLR 135
                 4577888888889999999999999***************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1264.90
//
Query:       CDO72098.1  [L=156]
Description: hypothetical protein BN946_scf184962.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-34  117.9   0.0    2.8e-28   98.1   0.0    2.1  2  Urm1      Urm1 (Ubiquitin related modifier)
    0.00017   22.1   0.0    0.00026   21.5   0.0    1.4  1  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> Urm1  Urm1 (Ubiquitin related modifier)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.1e-07    0.0027       2      26 ..      34      58 ..      33      66 .. 0.89
   2 !   98.1   0.0   3.2e-32   2.8e-28      26      96 .]      86     156 .]      74     156 .] 0.95

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.1e-07
                EEEEEETTCGGGCTT-SEEEEEE-S CS
        Urm1  2 veleflgGlelllekkkkhkvelei 26
                v++ef+gGlell++++++h+v l++
  CDO72098.1 34 VKVEFGGGLELLFSNQRSHRVALPA 58
                89*******************9984 PP

  == domain 2  score: 98.1 bits;  conditional E-value: 3.2e-32
                 SSSSS-BHHHHHHHHCCCC-SSGHHHCBSTTSB-TTEEEEETTCEHHHCTCCCSB--TTEEEEEEETTT-- CS
        Urm1  26 ieseevnleeliayikknlikerkevFlekdkvrPGilvLindaDwellgekdyelkdkDkivFistlhGG 96 
                 + +++v+l+ li ++++nl+ker e+F+e+++vrPGilvL+ndaDwel+ge +y+lkd+D+ivFistlhGG
  CDO72098.1  86 APKKPVDLSYLIFWLRDNLLKERAELFIENGTVRPGILVLVNDADWELEGEGEYQLKDGDEIVFISTLHGG 156
                 56899*****************************************************************9 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.9e-08   0.00026      31      77 .]     104     156 .]      82     156 .] 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.9e-08
                 HHHHTCHHG.....TTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  31 Lgerypela.....lerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77 
                 L ++  el+      ++++ v+vN+ + +   + +++lkdgDe++++    GG
  CDO72098.1 104 LLKERAELFiengtVRPGILVLVNDADWELeGEGEYQLKDGDEIVFISTLHGG 156
                 4444445557788888**************66***************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.34s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 864.28
//
Query:       CDO72099.1  [L=181]
Description: hypothetical protein BN946_scf184962.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 1114.60
//
Query:       CDO72100.1  [L=235]
Description: hypothetical protein BN946_scf184962.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-09   35.8   0.0    8.8e-09   35.4   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   4.9e-13   8.8e-09     177     239 ..      14      78 ..       8      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.9e-13
       RVT_2 177 ikiledvkkelakkfklkdlgkvskfLGieiaq..eaggiklsladyiakvvkkfeltdaktvat 239
                 i  + ++k +l k+f++ dlg+++  LGi++++   +  i l++++yi ++++kf ++++ +++t
  CDO72100.1  14 IAHIRRFKDDLRKHFDITDLGELHYILGIQVVRdrPTHAIYLNQTAYIRSMLEKFSMASCAPTTT 78 
                 67899**************************994457899********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1718.89
//
Query:       CDO72101.1  [L=307]
Description: hypothetical protein BN946_scf184962.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-16   59.4   3.7    3.4e-16   59.2   2.2    1.8  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    9.3e-06   25.4   0.1      2e-05   24.3   0.1    1.6  1  Retrotran_gag_3  gag-polypeptide of LTR copia-type
     0.0024   17.6   2.6     0.0049   16.7   2.6    1.5  1  zf-CCHC_2        Zinc knuckle
     0.0041   16.8   0.4     0.0041   16.8   0.4    2.0  2  DUF4219          Domain of unknown function (DUF4219)
     0.0047   17.0   2.6     0.0047   17.0   2.6    1.9  2  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
      0.032   14.1   3.4       0.07   13.0   3.4    1.5  1  zf-CCHC_6        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.45   1.3e+03      28      42 ..      66      80 ..      60      81 .. 0.83
   2 !   59.2   2.2   1.1e-19   3.4e-16       1     137 [.      82     222 ..      82     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.45
  Retrotran_gag_2 28 ktakevWdkLkelye 42
                      t++++W++++++y+
       CDO72101.1 66 PTTAKAWKAMQKEYM 80
                     477889******997 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 1.1e-19
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankl.tlrkklfslkmkegesvadhinkleelvneLsalgvkiddedk 93 
                      w  +d+ a+++++ + ++s  +++ ++k+ake+Wd+ k++y   ++   + + +++l++lk+ ++  +a+hi+++  l + ++++g++i+d  +
       CDO72101.1  82 WLLRDDTAQGTMLIAADKSAQTHIVDCKNAKEMWDTWKKVYVTHQQRIDIhYHSEELYTLKYVDSMPMANHIARILRLKQAIRDTGKEIKDLHI 175
                      5568999**********************************9998877776889**************************************** PP

  Retrotran_gag_2  94 vvllLasLPes..yetfvtaies.seedltleevieklleeeerrke 137
                      +  l+ sLP++  ++ ++ ++ s ++e+lt e v+  l+ e +rr +
       CDO72101.1 176 ARALVLSLPKTpsWDVIKIQLFSlEQEKLTSELVTPTLQAEVNRRTR 222
                      *********9777***************************9999875 PP

>> Retrotran_gag_3  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   6.7e-09     2e-05       4      48 .]      12      56 ..       9      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.7e-09
  Retrotran_gag_3  4 dnpGlvlvsvqLdgdNYssWkramrlaLsvKnklGFvdGslkkPa 48
                     + +++ l +  L+++NY+ W + m + L+ K ++  +dGs  +Pa
       CDO72101.1 12 TGTSSELRFAKLNSENYREWAINMKATLKLKMLWRIIDGSELEPA 56
                     56788899999*****************************99886 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.6   1.6e-06    0.0049       5      20 ..     257     272 ..     257     273 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
   zf-CCHC_2   5 vChiCgkkGHyIqdCP 20 
                 +C+ C +kGH+ ++CP
  CDO72101.1 257 KCRYCRAKGHWAKTCP 272
                 7*************** PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4   1.4e-06    0.0041       1      26 [.      23      48 ..      23      48 .. 0.95
   2 ?   -2.8   0.4       1.8   5.4e+03       6       9 ..     115     118 ..     111     119 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
     DUF4219  1 LdgtNYatWklrMklyLiaqdLWevV 26
                L+++NY +W++ Mk+ L+ + LW ++
  CDO72101.1 23 LNSENYREWAINMKATLKLKMLWRII 48
                899********************986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
     DUF4219   6 YatW 9  
                 ++tW
  CDO72101.1 115 WDTW 118
                 4555 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.7   1.4e+04      11      14 ..     152     155 ..     151     155 .. 0.85
   2 !   17.0   2.6   1.6e-06    0.0047       2      17 ..     257     272 ..     256     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.7
                 STTT CS
     zf-CCHC  11 Hiar 14 
                 Hiar
  CDO72101.1 152 HIAR 155
                 ***8 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.6e-06
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 kC++C   GH+a+ Cp
  CDO72101.1 257 KCRYCRAKGHWAKTCP 272
                 8**************9 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.4   2.4e-05      0.07       3      25 ..     257     277 ..     256     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.4e-05
   zf-CCHC_6   3 KCknCGAFGHtarSkrCPmkcwn 25 
                 KC+ C+A GH a  k+CP ++ +
  CDO72101.1 257 KCRYCRAKGHWA--KTCPRRQED 277
                 9***********..****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2217.24
//
Query:       CDO72102.1  [L=96]
Description: hypothetical protein BN946_scf184962.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 677.99
//
Query:       CDO72103.1  [L=319]
Description: hypothetical protein BN946_scf184962.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-43  147.5   0.0      2e-42  145.9   0.0    1.7  1  Peroxidase_2  Peroxidase, family 2


Domain annotation for each model (and alignments):
>> Peroxidase_2  Peroxidase, family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   1.1e-46     2e-42       2     186 ..      63     271 ..      62     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 1.1e-46
  Peroxidase_2   2 eyiapgpndsRspCPgLNaLANHGylprdGknitvselvaalrevynlspdlaallallavl.........tfdledlakHnviEhDaSltreDlyl 89 
                   ey +p+++dsR+ CP+LNa+ANHG + rdGkni++++l +a+ +vyn+sp+++ +la+ a+           +dl+dl+ Hn iEhDaSl re +++
    CDO72103.1  63 EYTPPRNGDSRCSCPALNAMANHGLIARDGKNIKFTDLYTAIGRVYNFSPAFCYVLASNAAGllvrnystdRLDLSDLDAHNCIEHDASLFRECVRV 159
                   69*********************************************************996667777777899*******************9994 PP

  Peroxidase_2  90 g...................ddvkldktlfkellskesseggkltledlaearvrreaesratnpefslsavqalvaygeaalllevfggkesvdke 167
                   +                   d+ k+ + l++ells+ +  +g+lt +d+++   +r+ e++++np+fsl ++++++++ + ++l+ vfg      ++
    CDO72103.1 160 SviwvvgdlaatgvdsyddpDQGKICEPLVEELLSSGTGPDGNLTSNDVSRLLGKRRVEAKRQNPKFSLASFHKMFGSFNGSTLIVVFG----GLVK 252
                   445555566667788888844499**********9557899***********************************************7....5689 PP

  Peroxidase_2 168 vlrsffgeErlpegwkrra 186
                    lr+f++eErlp+gw+ r+
    CDO72103.1 253 DLRAFLTEERLPDGWEPRT 271
                   9**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2338.46
//
Query:       CDO72104.1  [L=298]
Description: hypothetical protein BN946_scf184962.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2253.79
//
Query:       CDO72105.1  [L=1276]
Description: hypothetical protein BN946_scf184962.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-23   83.4   2.6    7.7e-23   81.6   2.6    2.0  1  Sds3      Sds3-like


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   2.6   4.3e-27   7.7e-23       1     116 [.     445     561 ..     445     567 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4.3e-27
        Sds3   1 lleklskiessFaelRDklYrerLteLqteltllqqGthpellrklrdleeerDaeLkrlrlreeyqlkriekefkadiekakqeheklv.kllkekly 98 
                 +l++l+ ie +Fa lR++lY e++  L +e  l+ +Gthpell+   +l+++rD+ L+++ +r++y++ ++ k +k d+e ++++++  + ++l+++++
  CDO72105.1 445 ALDELAAIELKFALLRERLYVEKMDTLAWEEGLIADGTHPELLHLHAELSKRRDKCLELASRRRDYEVANVTKRRKLDEEGVWSWWKVDArDELQTEMI 543
                 5799***********************************************************************************765168****** PP

        Sds3  99 eelekkikrLkeeklllD 116
                 +e+++k++rL++e++ l+
  CDO72105.1 544 SETNSKRRRLERERRALE 561
                 ***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1221  (0.068102); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.31u 0.32s 00:00:01.63 Elapsed: 00:00:00.50
# Mc/sec: 7614.90
//
Query:       CDO72106.1  [L=306]
Description: hypothetical protein BN946_scf184962.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-49  169.2   0.0    1.9e-49  168.7   0.0    1.1  1  Peroxidase_2  Peroxidase, family 2


Domain annotation for each model (and alignments):
>> Peroxidase_2  Peroxidase, family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   0.0   1.1e-53   1.9e-49       2     186 ..      63     253 ..      61     254 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 1.1e-53
  Peroxidase_2   2 eyiapgpndsRspCPgLNaLANHGylprdGknitvselvaalrevynlspdlaallallavl.........tfdledlakHnviEhDaSltreDlyl 89 
                   +yi+p+++dsRs CP+LNa+ANHG lprdGkni+++el  a+r+vyn+sp+++  + ++ ++          fdl d++ Hn iEhDaSltr D y 
    CDO72106.1  63 QYIPPREGDSRSSCPALNAMANHGLLPRDGKNIKFNELGVAIRRVYNFSPTFCFSVPNYIAQalvrnyrtdRFDLADIDAHNCIEHDASLTRVDSYD 159
                   69***************************************************9999999977888888899************************7 PP

  Peroxidase_2  90 gdd.vkldktlfkellskesseggkltledlaearvrreaesratnpefslsavqalvaygeaalllevfggkesvdkevlrsffgeErlpegwkrr 185
                   ++d +k+ k l++ell++ +  gg+lt +dl++   +r+ e++++np+fsl  v++++++++a++ll++fg     +++ l  f++eErlp+gw+ r
    CDO72106.1 160 DPDqAKIAKALVEELLNSGTGPGGDLTPNDLSRLLGKRRVEAKRRNPKFSLAFVHKMFGSSNASTLLTIFG----GRVQDLHPFLHEERLPDGWEPR 252
                   6555*************65789************************************************7....689****************998 PP

  Peroxidase_2 186 a 186
                   +
    CDO72106.1 253 T 253
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2373.14
//
Query:       CDO72107.1  [L=347]
Description: hypothetical protein BN946_scf184962.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-10   40.1   0.0    7.1e-10   39.0   0.0    1.5  1  NUDIX     NUDIX domain
    5.1e-07   29.7   0.0    0.00082   19.3   0.0    2.6  2  DUF4743   Domain of unknown function (DUF4743)


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   7.9e-14   7.1e-10      15     116 ..     184     296 ..     171     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7.9e-14
                 SEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEE....EEEEEEEEEEEEEEEEEEEEEEEEEEE..EEECSGCSST.STT CS
       NUDIX  15 gevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaell....ellgrlhylapydgpygdeheilyvfl..eevegelepn.den 102
                   +++ rr+  k+++pg  +  ++G++e+g  + ++++ E  EE+ ++++ +    + +g++ y+++++  +  + e+ yv++   ++++ ++p+  ++
  CDO72107.1 184 YNIWVPRRAatKQTWPGyLDnSVAGGIEAGLGVFDCVVKESMEEASIPEDVVrryaRPTGSVSYFFQTPRGWL-QPEVEYVYElsLPPNSGVQPQpLDG 281
                 449999***999999995557**********888************977888666677777777777666666.99999999998555555555569** PP

                 TEEEEEEEEHHHH.H CS
       NUDIX 103 evsevrwvpleel.l 116
                 ev++++++pl+++  
  CDO72107.1 282 EVESFELLPLKKVvE 296
                 ***********9932 PP

>> DUF4743  Domain of unknown function (DUF4743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.2e-08   0.00082      26     100 ..      42     128 ..      11     135 .. 0.68
   2 !    7.5   0.0   0.00042       3.7     106     119 ..     150     163 ..     142     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.2e-08
                 TEEEEEEEHHHHHHHCT-TTTEEE-SS............EEEE-TT--SHHHHHHHHHHHHHHHHHTT......SS----S-EEEE-SS CS
     DUF4743  26 gqqvGlirpdvaeklrkfpdvFevseke...........aveLapslktyeeRtaaveevleelreegsf...valkgwRdElYeVras 100
                  + vGl+rp+++e+lrk  +       +            v++a+  kt+ +R++ +++++e++r+ g     +  ++wR+ElY+V ++
  CDO72107.1  42 SAAVGLLRPEIVEQLRKEAQSSPSP--SwyfgsdeagkqWVSFADGIKTPSARSRVMKDLCERWRDTGLWpdeISPRKWRNELYPVYRN 128
                 4679999999999998744321111..1223333345779***************************95543356789********865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00042
                 -EEEEGGGTGGGT- CS
     DUF4743 106 llkleRaaaplfGv 119
                  +++eRaa+ lfG+
  CDO72107.1 150 AFRMERAASGLFGI 163
                 799**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2805.42
//
Query:       CDO72108.1  [L=234]
Description: hypothetical protein BN946_scf184962.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-74  249.6   0.0    1.1e-73  247.1   0.0    1.8  1  RNA_Me_trans  Predicted SAM-dependent RNA methyltransferase


Domain annotation for each model (and alignments):
>> RNA_Me_trans  Predicted SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   0.0     6e-78   1.1e-73       2     199 ..       5     230 ..       4     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: 247.1 bits;  conditional E-value: 6e-78
  RNA_Me_trans   2 yviEhleeel......seWvllEYrhiakevgae.nliltslskasleslpeelksl.....aklelekesveellkelkevkkekvclLDpkaeke 86 
                   yviEh+ee++      ++Wv+lEY+h+ +++g++ ++++t+ls  s+++l++ +++      a++ ++++sv ++++e+ +v+ ekvclLDpkaeke
    CDO72108.1   5 YVIEHMEEDEetpksiPKWVELEYMHMRTLAGPGaTVHFTHLSPGSCNTLSALFSQDgdsskAEAYAHQNSVLQIMEEK-GVPLEKVCLLDPKAEKE 100
                   9******99999*********************978********99999877777668887777788888********5.9**************** PP

  RNA_Me_trans  87 lspedaee.fdvflfGGIlGddpprdRTselrkkgfegRrLGpvqmttDtAvrvtklvvedkvkle.................eieyvdepelkfnk 165
                   lsped+++ f++flfGGIlGddpprdRT elr +gf+gRrLGpvqmttDtA++vtk+vv+dk++l+                   +  d+p++ fn+
    CDO72108.1 101 LSPEDGDGrFEWFLFGGILGDDPPRDRTGELRVLGFPGRRLGPVQMTTDTALGVTKIVVQDKKRLSeipflvrmlnylrtglfLTPLQDHPTIVFNA 197
                   *******99*********************************************************9999999999999999888999********* PP

  RNA_Me_trans 166 kesvempfrYvkdeegkpllpegmlellkkdlek 199
                   kesvempfrY+  + ++p+lp+gm+e+l++dl++
    CDO72108.1 198 KESVEMPFRYIS-DGKEPILPPGMREHLHEDLNR 230
                   ************.69****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1520.24
//
Query:       CDO72109.1  [L=365]
Description: hypothetical protein BN946_scf184962.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-66  223.7   0.0    3.4e-66  223.4   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.38   11.0   0.0    1.7  2  RNA_binding   RNA binding


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.0   3.8e-70   3.4e-66       1     292 [.      31     323 ..      31     325 .. 0.94

  Alignments for each domain:
  == domain 1  score: 223.4 bits;  conditional E-value: 3.8e-70
                   .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........--SSSTTSSSS-H CS
  Aldo_ket_red   1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........dlrdaeiksglsk 83 
                   +l+lG++++g+k      ++++ke++++ll++++eaG nf+DtA+ Y++ +see++Ge++++ r+ r+++iiatK         d  ++++  g + 
    CDO72109.1  31 PLCLGAMSIGDKwekygmGAMNKETSFKLLDAFYEAGGNFIDTANGYQDESSEEFIGEWMEA-RGVRDQMIIATKYttnfkrhaDIPQKTNYTGNNL 126
                   69************************************************************.****************998877777777777777 PP

                   HHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHH CS
  Aldo_ket_red  84 eniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegll 176
                   ++++ s+e+slk+L+t+y+D+l++H++d+++  +eev+  l+ lv +Gk+ ++G+S +++++++ka    + ++k+++v++q  +++l++++e++++
    CDO72109.1 127 KSLHLSVEASLKKLRTNYIDILYVHWWDFDTT-VEEVMNGLHNLVVSGKVLYLGISDTPAWIVSKAnlyaRLTGKTPFVIYQGAWSVLQRDFEREII 222
                   8*******************************.**************************************************************** PP

                   HHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT-.-HHHHHHHHHTTSTT-SEEEE--SSHHHHHH CS
  Aldo_ket_red 177 elckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgv.slaqlalryalsqpavgivipgasnieqled 272
                   ++++++g++l ++ +l+ G       s+++  +++             + + +++l+e+ak+ g  s++++a++y++++ + +++i+g +++eql +
    CDO72109.1 223 PMAREEGLALAPWNVLAAGRTV---FSPAWERTED-------------EKKVCKALEEVAKQVGAkSIQAVAIAYVMQKTPYVFPIIGGRKPEQLYA 303
                   *****************98765...3444443333.............34889*********7777******************************* PP

                   HHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 273 nldalelklseeevaeldel 292
                   n++al++ ls+e++++l+++
    CDO72109.1 304 NIEALDISLSDEQIKYLESI 323
                   *****************998 PP

>> RNA_binding  RNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.76   6.8e+03      74      81 ..     160     167 ..     117     181 .. 0.54
   2 ?   11.0   0.0   4.2e-05      0.38      10      78 ..     251     322 ..     245     326 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.76
                  HHHHHCCH CS
  RNA_binding  74 keLlkele 81 
                  +e++++l 
   CDO72109.1 160 EEVMNGLH 167
                  33333333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.2e-05
                  TTC-HHHHHHHHHTTSTTS..E---EEEEEE-CC.C-EEEEEEEEESSHHH.HHHHHHHHHHHCCCCHHHHHH CS
  RNA_binding  10 aTEdeekVlealsnllpee..eveieeeeaeGhy.gnpitileaelekkka.kkvlkkllellreeeikeLlk 78 
                   TEde+kV +al+++ ++   + +i+   +     + p+++  +  +k ++  + ++ l  +l++e+ik+L++
   CDO72109.1 251 RTEDEKKVCKALEEVAKQVgaK-SIQAVAIAYVMqKTPYVFPIIGGRKPEQlYANIEALDISLSDEQIKYLES 322
                  7***************988742.34333332222244555555555555556666667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2596.35
//
Query:       CDO72110.1  [L=343]
Description: hypothetical protein BN946_scf184962.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-67  225.2   0.1    1.3e-66  224.8   0.1    1.1  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.17   12.2   0.1       0.61   10.4   0.0    1.9  2  RNA_binding   RNA binding


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.1   1.4e-70   1.3e-66       1     292 [.      31     323 ..      31     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 1.4e-70
                   .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........--SSSTTSSSS-H CS
  Aldo_ket_red   1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........dlrdaeiksglsk 83 
                   +l+lG++++g+k      ++++ke++++ll++++eaG nf+DtA+ Y++ +see++Ge++++ r+ r+++iiatK         d  ++++  g + 
    CDO72110.1  31 PLCLGAMSIGDKwdkygmGAMNKETSFKLLDAFYEAGGNFIDTANGYQDESSEEFIGEWMEA-RGVRDQMIIATKYttnfkrhaDIAQKTHYTGNNL 126
                   69************************************************************.*************999998888888888888888 PP

                   HHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHH CS
  Aldo_ket_red  84 eniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegll 176
                   ++++ s+e+slk+L+t+y+D+l++H++d+++  +eev+  l+ lv +Gk+ ++G+S +++++++ka    +  +k+++v++q  +++l++++e++++
    CDO72110.1 127 KSLHLSVEASLKKLRTNYIDILYVHWWDFDTT-VEEVMNGLHNLVVSGKVLYLGISDTPAWIVSKAnlyaRLMGKTPFVIYQGAWSVLQRDFEREII 222
                   8*******************************.**************************************************************** PP

                   HHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT-.-HHHHHHHHHTTSTT-SEEEE--SSHHHHHH CS
  Aldo_ket_red 177 elckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgv.slaqlalryalsqpavgivipgasnieqled 272
                   ++++++g++l ++ +l+gG       ++++  ++              + + +++l+e+ak+ g  s++++a++y++++ + +++i+g +++eql +
    CDO72110.1 223 PMAREEGLALAPWNVLAGGRTV---SRPDWERTE-------------DEKKVCKALEEVAKQVGAkSIQAVAIAYVMQKTPYVFPIVGGRKPEQLYA 303
                   *****************99887...344444333.............334789*********7777******************************* PP

                   HHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 273 nldalelklseeevaeldel 292
                   n++ale+ ls+e++++l+++
    CDO72110.1 304 NIEALEISLSAEQIKYLESV 323
                   ****************9985 PP

>> RNA_binding  RNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.33     3e+03      42      54 ..     123     135 ..      90     181 .. 0.56
   2 ?   10.4   0.0   6.8e-05      0.61      10      76 ..     251     320 ..     248     324 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.33
                  C-EEEEEEEEESS CS
  RNA_binding  42 gnpitileaelek 54 
                  gn+ + l++ +e 
   CDO72110.1 123 GNNLKSLHLSVEA 135
                  5555544444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.8e-05
                  TTC-HHHHHHHHHTTSTTS..E---EEEEEE-CC.C-EEEEEEEEESSHHH.HHHHHHHHHHHCCCCHHHH CS
  RNA_binding  10 aTEdeekVlealsnllpee..eveieeeeaeGhy.gnpitileaelekkka.kkvlkkllellreeeikeL 76 
                   TEde+kV +al+++ ++   + +i+   +     + p+++  +  +k ++  + ++ l  +l+ e+ik+L
   CDO72110.1 251 RTEDEKKVCKALEEVAKQVgaK-SIQAVAIAYVMqKTPYVFPIVGGRKPEQlYANIEALEISLSAEQIKYL 320
                  6**************9988742.343333322221444444444445555555566666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2768.18
//
Query:       CDO72111.1  [L=323]
Description: hypothetical protein BN946_scf184962.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-08   33.9   3.0    0.00079   19.9   0.0    3.5  4  TPR_19    Tetratricopeptide repeat
    3.7e-07   30.2   5.0    0.00041   20.4   0.4    3.4  4  TPR_9     Tetratricopeptide repeat
    7.2e-07   28.9   1.8      0.055   13.6   0.0    4.5  5  TPR_2     Tetratricopeptide repeat
    1.2e-06   28.1   0.3      0.085   12.7   0.0    3.1  3  TPR_1     Tetratricopeptide repeat
      1e-05   25.9   3.8     0.0008   20.0   0.2    4.6  5  TPR_14    Tetratricopeptide repeat
    4.7e-05   23.3   0.5       0.26   11.6   0.0    3.4  3  TPR_8     Tetratricopeptide repeat
    5.8e-05   22.7   0.1      0.041   13.6   0.2    2.7  2  TPR_11    TPR repeat
     0.0021   18.7   2.6        0.5   11.1   0.0    4.8  6  TPR_16    Tetratricopeptide repeat
     0.0023   18.2   3.5        1.1    9.6   0.0    3.2  3  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.056   13.8   0.0    1.8  1  DUF5601   Domain of unknown function (DUF5601)
      0.038   13.0   0.0      0.051   12.6   0.0    1.1  1  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
      0.048   14.1   0.8        7.5    7.2   0.0    3.6  3  TPR_17    Tetratricopeptide repeat
       0.15   11.8   0.6         24    4.6   0.0    2.5  3  RPN7      26S proteasome subunit RPN7


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         4   5.5e+03      46      61 ..      89     104 ..      88     107 .. 0.83
   2 !   19.9   0.0   5.8e-07   0.00079       8      55 ..     119     166 ..     114     171 .. 0.90
   3 !   11.5   0.1   0.00024      0.33      26      61 ..     171     206 ..     162     209 .. 0.90
   4 !   11.0   0.4   0.00033      0.45       5      58 ..     184     237 ..     181     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4
      TPR_19  46 alLdalpeedpddary 61 
                 ++L+ l +++pd++r+
  CDO72111.1  89 RCLKILADKFPDSPRV 104
                 6788899999999998 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 5.8e-07
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 +  l+++ ++l+ed   a+++ + A +l ++g +d+A + L+a ++ +
  CDO72111.1 119 EVVLRYYDELLEEDSSRAAIWRRKAHVLRQMGKIDKAVEELSAMLDTF 166
                 556899************************************998865 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00024
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpddary 61 
                 e +l LA+++l   q++ A + L+ +++  p+++ y
  CDO72111.1 171 EGWLELADIYLTCQQYTYALQSLSHALLLSPQNPSY 206
                 6799***************************99877 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00033
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++y+ Al+ l+ al  +p+n+   l+ Ae  + + ++  A ++  +  +++ dd
  CDO72111.1 184 QQYTYALQSLSHALLLSPQNPSYFLQFAETAYLAEDIPLALKMFLQTVDMTDDD 237
                 68999***********************************99988888777775 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.8   2.4e+03      37      57 ..      51      72 ..      51      89 .. 0.67
   2 ?   -1.9   0.0       2.8   3.9e+03       3      25 ..      72      98 ..      70     103 .. 0.70
   3 !   20.4   0.4     3e-07   0.00041       6      57 ..     113     164 ..     110     166 .. 0.94
   4 !    9.7   0.0   0.00065       0.9      29      63 ..     170     204 ..     166     208 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.8
       TPR_9 37 lllaqlGclsaAladLeayl.a 57
                l+la l++ ++++ad  +++ +
  CDO72111.1 51 LALAALDQGNTEVADVRTFAlS 72
                5678888888888888888752 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
       TPR_9  3 aiaireedweralavverllll....a 25
                +i+  + d+++al + +r l +    +
  CDO72111.1 72 SIYVTPPDAAVALYAPQRCLKIladkF 98
                578888888889888888887744444 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 3e-07
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayla 57 
                    e+ e+ l++++ ll  ++ ++  +r  + +l q+G + +A+++L a+l+
  CDO72111.1 113 EATERPEVVLRYYDELLEEDSSRAAIWRRKAHVLRQMGKIDKAVEELSAMLD 164
                 567999*******************************************997 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00065
       TPR_9  29 peerrdRGlllaqlGclsaAladLeaylalapdap 63 
                 +e +++ + ++    ++  Al+ L ++l l+p++p
  CDO72111.1 170 VEGWLELADIYLTCQQYTYALQSLSHALLLSPQNP 204
                 678*****************************987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.9   1.1e+04       8      19 ..      28      39 ..      25      39 .. 0.80
   2 ?   -0.4   0.0       1.2   1.7e+03       7      20 ..      51      64 ..      49      64 .. 0.83
   3 ?   -0.1   0.0      0.95   1.3e+03      16      31 ..     117     132 ..     109     134 .. 0.77
   4 !    9.8   0.0   0.00065      0.89       1      25 [.     136     160 ..     136     165 .. 0.88
   5 !   13.6   0.0     4e-05     0.055       2      34 .]     171     203 ..     170     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.9
       TPR_2  8 Glayyklgdyee 19
                Gla+++ g y++
  CDO72111.1 28 GLALLEHGSYAK 39
                899999998876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.2
       TPR_2  7 lGlayyklgdyeeA 20
                l+la++ +g+ e A
  CDO72111.1 51 LALAALDQGNTEVA 64
                899******98755 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.95
       TPR_2  16 dyeeAleafekAleld 31 
                 ++e  l+++++ le d
  CDO72111.1 117 RPEVVLRYYDELLEED 132
                 5566689******987 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00065
       TPR_2   1 aealynlGlayyklgdyeeAleafe 25 
                 a ++ + + +++++g+ ++A+e + 
  CDO72111.1 136 AAIWRRKAHVLRQMGKIDKAVEELS 160
                 679******************9876 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 4e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 e++ +l+++y+  ++y  Al+ +  Al l P+n
  CDO72111.1 171 EGWLELADIYLTCQQYTYALQSLSHALLLSPQN 203
                 89*****************************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.7   9.2e+03       7      17 ..      51      61 ..      51      62 .. 0.77
   2 !   12.1   0.0   9.6e-05      0.13       1      22 [.     136     157 ..     136     159 .. 0.94
   3 !   12.7   0.0   6.2e-05     0.085       2      34 .]     171     203 ..     170     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.7
                HHHHHHHTT-H CS
       TPR_1  7 lGnayfklgky 17
                l++a + +g+ 
  CDO72111.1 51 LALAALDQGNT 61
                68888999985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.6e-05
                 HHHHHHHHHHHHHTT-HHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAle 22 
                 a ++ +++++++++gk d+A+e
  CDO72111.1 136 AAIWRRKAHVLRQMGKIDKAVE 157
                 678*****************97 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 6.2e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 + +  l+ +y+  ++y  Al+  + AL l P+n
  CDO72111.1 171 EGWLELADIYLTCQQYTYALQSLSHALLLSPQN 203
                 789****************************97 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.9   2.7e+03      17      33 ..      45      61 ..      29      72 .. 0.71
   2 ?   -1.7   0.0       5.6   7.8e+03      23      37 ..      90     104 ..      88     110 .. 0.77
   3 ?    5.2   0.1     0.034        47      11      42 ..     112     143 ..     106     143 .. 0.89
   4 !   20.0   0.2   5.8e-07    0.0008       2      43 ..     137     178 ..     135     179 .. 0.95
   5 !    9.1   0.0    0.0019       2.7       2      42 ..     171     211 ..     170     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.9
      TPR_14 17 pdeAiallrralalaPd 33
                +de ++l+ +al+++ +
  CDO72111.1 45 WDEVEKLALAALDQGNT 61
                56777777777776544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.6
      TPR_14  23 llrralalaPddaea 37 
                 +l+ + +++Pd++++
  CDO72111.1  90 CLKILADKFPDSPRV 104
                 566677799**9986 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.034
      TPR_14  11 llalGdpdeAiallrralalaPddaeawllla 42 
                 ++a ++p+  +++++++l+ + + a++w++ a
  CDO72111.1 112 MEATERPEVVLRYYDELLEEDSSRAAIWRRKA 143
                 6788899999******************9976 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 5.8e-07
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + +++ a++l++ G+ d+A++ l ++l+++ ++ e wl+la+
  CDO72111.1 137 AIWRRKAHVLRQMGKIDKAVEELSAMLDTFYTEVEGWLELAD 178
                 579999**********************************97 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0019
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 e +l+la+++l+ +++  A++ l  al l P+++ + l+ a
  CDO72111.1 171 EGWLELADIYLTCQQYTYALQSLSHALLLSPQNPSYFLQFA 211
                 78*******************************98777655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.2   4.4e+03       7      20 ..      51      64 ..      50      65 .. 0.85
   2 !    8.0   0.0    0.0027       3.7       4      23 ..     139     158 ..     136     162 .. 0.86
   3 !   11.6   0.0   0.00019      0.26       2      34 .]     171     203 ..     170     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.2
                HHHHHHHTT-HHHH CS
       TPR_8  7 lgsiylklgdyeeA 20
                l+++ l++g+ e A
  CDO72111.1 51 LALAALDQGNTEVA 64
                899999***99976 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHTT-HHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkey 23 
                 + +++++++++g++++A+e 
  CDO72111.1 139 WRRKAHVLRQMGKIDKAVEE 158
                 5589*************996 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00019
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 e ++ l++iyl+ ++y  A +++ +al l+p+n
  CDO72111.1 171 EGWLELADIYLTCQQYTYALQSLSHALLLSPQN 203
                 789****************************86 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0062       8.5       2      18 ..     144     160 ..     143     162 .. 0.89
   2 !   13.6   0.2     3e-05     0.041       2      32 ..     178     208 ..     177     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0062
      TPR_11   2 dayyeqGkyeeAieaYk 18 
                 +++++ Gk+++A+e+++
  CDO72111.1 144 HVLRQMGKIDKAVEELS 160
                 789***********975 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3e-05
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayy 32 
                 d+y   ++y+ A+++++ Al l+P+n++ ++
  CDO72111.1 178 DIYLTCQQYTYALQSLSHALLLSPQNPSYFL 208
                 899************************9886 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.88   1.2e+03      38      51 ..      25      38 ..       6      39 .. 0.77
   2 ?    1.7   0.1      0.31   4.2e+02       2      16 ..      50      64 ..      49      65 .. 0.79
   3 ?   -1.3   0.0       2.7   3.8e+03      18      32 ..      89     103 ..      88     109 .. 0.78
   4 !    6.8   0.0    0.0076        11      18      61 ..     123     163 ..     122     165 .. 0.87
   5 !   11.1   0.0   0.00036       0.5       3      54 ..     142     190 ..     140     206 .. 0.84
   6 ?   -1.0   0.0       2.1   2.9e+03       4      27 ..     211     234 ..     208     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.88
      TPR_16 38 lllgdaalrqgrla 51
                +++g+a+l++g +a
  CDO72111.1 25 FESGLALLEHGSYA 38
                78999999999998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.31
      TPR_16  2 alaraalragdyddA 16
                +la+aal++g+ + A
  CDO72111.1 50 KLALAALDQGNTEVA 64
                578899999988766 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.7
      TPR_16  18 aaleaalkrdpssPd 32 
                 + l+++ +++p+sP+
  CDO72111.1  89 RCLKILADKFPDSPR 103
                 67889999**88884 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0076
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 ++++++l+ d   + +a+ +  ++ ++ + g  ++A++ + a+l
  CDO72111.1 123 RYYDELLEED---SSRAAIWRRKAHVLRQMGKIDKAVEELSAML 163
                 7899999999...999********99999999999998877776 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00036
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 +a+ +++ g+ d+A++ l a l+ +      +e +l+l+d++l  + ++ A+
  CDO72111.1 142 KAHVLRQMGKIDKAVEELSAMLDTF---YTEVEGWLELADIYLTCQQYTYAL 190
                 79***********************...99999*********9766665555 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 2.1
      TPR_16   4 araalragdyddAaaaleaalkrd 27 
                 a  a+ a d + A++++ +++++ 
  CDO72111.1 211 AETAYLAEDIPLALKMFLQTVDMT 234
                 556666788899999999998877 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       7.4     1e+04       9      20 ..      51      62 ..      49      64 .. 0.48
   2 !    9.6   0.0   0.00077       1.1       2      31 ..     135     164 ..     134     172 .. 0.83
   3 !    8.1   0.3    0.0024       3.3       6      74 ..     173     233 ..     168     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.4
      TPR_12  9 laavlrrlgryd 20
                la++ + +g+ +
  CDO72111.1 51 LALAALDQGNTE 62
                455555555544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00077
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekale 31 
                 +a+++++ a+vlr++g+ d+A e l + l+
  CDO72111.1 135 RAAIWRRKAHVLRQMGKIDKAVEELSAMLD 164
                 6899999**************998876665 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0024
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 + +la++++  ++y+ Al+ l +al +      p++p    +    +++ +++++   Al+++ +++++
  CDO72111.1 173 WLELADIYLTCQQYTYALQSLSHALLLS-----PQNPS---YFLQFAETAYLAEDIPLALKMFLQTVDM 233
                 448************************9.....99877...6999999999999999999999999887 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.1e-05     0.056       5      45 ..     144     184 ..     140     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-05
     DUF5601   5 sfvrkisqrsisieelSemVqdFyqnlaerlnktplyktvs 45 
                 +++r++ + +  +eelS m   Fy+  + +l+   +y t++
  CDO72111.1 144 HVLRQMGKIDKAVEELSAMLDTFYTEVEGWLELADIYLTCQ 184
                 899999999999*****************999999998765 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.7e-05     0.051     188     337 ..      90     238 ..      83     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHTT-GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-H.HHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HH CS
       ChAPs 188 alellekLkeeepevvillarvllladeEvdavkllneeleeeekd.aelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledie 285
                 +l++l     ++p v + l+ + + a e  + v   ++el ee ++ a++   +a+ l +  k + A+e  +   ++   e + W +L+++Y++ +++ 
  CDO72111.1  90 CLKILADKFPDSPRVDV-LTGIRMEATERPEVVLRYYDELLEEDSSrAAIWRRKAHVLRQMGKIDKAVEELSAMLDTFYTEVEGWLELADIYLTCQQYT 187
                 55565555555666554.4556666666666666667776555444489999999999999999999999999999999******************** PP

                 HHHHHHHT-.---SS--------SS-------EB---TTSS--TT-------- CS
       ChAPs 286 nALltLNsc.PmftykekdvlrriapakseddlhlPlpldvvldevselnsse 337
                  AL +L     +++ +  ++l+ ++ a   +d  +Pl l++ l+ v+  ++ +
  CDO72111.1 188 YALQSLSHAlLLSPQNPSYFLQFAETAYLAED--IPLALKMFLQTVDMTDDDD 238
                 ******86505567777888888888885555..5555555555555444443 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0055       7.5       1      34 []     124     157 ..     124     157 .. 0.94
   2 ?    2.0   0.1      0.24   3.3e+02      14      33 ..     171     190 ..     168     191 .. 0.83
   3 ?    0.6   0.1      0.67   9.2e+02       5      28 ..     196     219 ..     193     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0055
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +y + le d + a  +  +A +l++ G+ ++A++
  CDO72111.1 124 YYDELLEEDSSRAAIWRRKAHVLRQMGKIDKAVE 157
                 699***************************9975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.24
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 + + +LA ++l   ++  A+
  CDO72111.1 171 EGWLELADIYLTCQQYTYAL 190
                 6799*******999997776 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.67
      TPR_17   5 aleldPnnadaynnLAelllknGd 28 
                 al l P n+  + + Ae+ + + d
  CDO72111.1 196 ALLLSPQNPSYFLQFAETAYLAED 219
                 88899*****99999999877766 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.2   5.8e+03     109     131 ..      17      39 ..       7      43 .. 0.77
   2 ?    4.5   0.1     0.019        26      32      65 ..     132     165 ..     119     169 .. 0.84
   3 ?    4.6   0.0     0.018        24      38      97 ..     172     228 ..     168     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.2
                 HHHHHHHHHHHHHHHHHTT-HHH CS
        RPN7 109 werknrlkvyeGlallairkfke 131
                 ++rk +    +Glall+ + +++
  CDO72111.1  17 QSRKSKETFESGLALLEHGSYAK 39 
                 67788888889999999998875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC CS
        RPN7  32 keeirrakldlaehYlkigdleeAlkaysrirey 65 
                 +++ ++ + ++a+   ++g++++A++ +s++++ 
  CDO72111.1 132 DSSRAAIWRRKAHVLRQMGKIDKAVEELSAMLDT 165
                 56777889999******************99985 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHH CS
        RPN7  38 akldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskyle 97 
                 ++l+la+ Yl++ +++ Al+ +s ++     + +  + +l++ ++a+ ++d+ l+ k   
  CDO72111.1 172 GWLELADIYLTCQQYTYALQSLSHAL---LLSPQNPSYFLQFAETAYLAEDIPLALKMFL 228
                 6899******************9984...4444566778888888888888877666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2201.50
//
Query:       CDO72112.1  [L=864]
Description: hypothetical protein BN946_scf184962.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-56  189.6   0.0    1.7e-31  109.8   0.0    2.3  2  Pterin_bind  Pterin binding enzyme
    1.6e-37  128.5   0.0    1.7e-22   80.1   0.0    2.4  2  FolB         Dihydroneopterin aldolase
    1.8e-34  118.6   0.0    3.8e-34  117.6   0.0    1.6  1  HPPK         7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0     2e-25   1.2e-21       1      70 [.     532     601 ..     532     609 .. 0.96
   2 !  109.8   0.0   2.8e-35   1.7e-31      68     244 .]     618     847 ..     614     847 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 2e-25
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHH CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrd 70 
                  m+ lN+tpdsfsdg+ + +l +al+ a++ v++GA+i+Digg strPga++v++eee +rvvpv++a+r+
   CDO72112.1 532 MATLNATPDSFSDGSAHYNLPDALSYANSAVSDGANIIDIGGYSTRPGASYVSPEEEFSRVVPVVQAIRG 601
                  788*****************************************************************97 PP

  == domain 2  score: 109.8 bits;  conditional E-value: 2.8e-35
                  HHHHCTSEEEEE-S-HHHHHHHHHTTSEEEEETTTTS............SSTTHHHHHHHHT-EEEEESECSSTTTHCCCC.CCCS.......SHHHH CS
  Pterin_bind  68 lrdeadvpisiDttkaevaeaAlkagadivNdvsgee............rdpkmlelvaeagaavvvmhmrgtpktmqeee.gqye.......dvvee 145
                  ++++a ++is+Dt+++evae+ + aga+ +Ndv +++            +++km ++ ++  ++v++mh+rg +   + ++  +y         v e 
   CDO72112.1 618 IAKTAATLISVDTFRWEVAEESVHAGANCINDVYAFTgpdwpatdrsaqHFAKMRQVTRDLAVPVILMHSRGPASANKDYSqYDYAadgdgrgAVLEA 715
                  6677889****************************************************************555544444422221111122268999 PP

                  HHHHHHHHHHHHHH..TT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHTTS....................SEBEEEGTTGHHHHHHH..CTTC. CS
  Pterin_bind 146 veaflearveaaee..aGvaperillDpgigfgkteehnlellrrldelreale....................vpvllGvSrksflgrll..elgk. 218
                  v+++l a+v+aa++   G++++ +++Dpg+gf+kt e nle+lr+ + + ++                      +p+l+G+Srksflg++l  +  + 
   CDO72112.1 716 VRVELGAKVNAAVKgrGGIRRWLVIVDPGLGFSKTVEGNLEVLRDSSSVVSEYSerlrkvtappsrpsrnplagYPMLIGASRKSFLGAILerP--Dt 811
                  **********9986337***************************977764444466679999****************************9532..35 PP

                  ..........HGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 219 ..........aeeRdagtaaflalaaaaGadivrVh 244
                            + eRd +taa+++ a+++Ga++vrVh
   CDO72112.1 812 vghyegrqtrPVERDYATAAAVSCAVQQGATVVRVH 847
                  789********************************9 PP

>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.1e-15   6.3e-12      21     111 .]      33     123 ..      28     123 .. 0.93
   2 !   80.1   0.0   2.9e-26   1.7e-22       2     111 .]     137     242 ..     136     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 1.1e-15
                 C-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHST.ESEEEEEEEETTSSS.TCESEEEEEEE CS
        FolB  21 lkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefp.vekvevrveKpnapi.gaadavgveit 111
                 ++Q+v+v+ +++ d+++aa++ddl+++v+Y ++a+++k++  ++ f ++Eala+ri+e+  ++fp + ++++++   +a++ g   + gve+t
  CDO72112.1  33 HPQPVLVTCSIAHDVRHAAANDDLSHSVNYSAVASNIKAVGDAEVFPSIEALADRICETHARRFPaAGALTLSIARTKALLyG--TSFGVELT 123
                 69****************************************99*********************99999*********7544..68888875 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 2.9e-26
                 EEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHST..ESEEEEEEEETTS CS
        FolB   2 eikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefp..vekvevrveKpna 98 
                 +++gl ++ai G++p+Er++kQrv +d+ l+       +s  l+ ++dY++l++++ ++ve+s++ ++E+la++ia+++l+      + ++vr++Kp+a
  CDO72112.1 137 FLRGLACYAILGIHPHERQRKQRVCIDVFLTK-----ERSRGLHPSLDYRTLEQQLFDFVEESKYLTVESLASEIAKHVLNFVAdeQSYATVRISKPSA 230
                 89****************************43.....57778*******************99****************97666656679********* PP

                 SSTCESEEEEEEE CS
        FolB  99 pigaadavgveit 111
                 +++ a+a++ e+t
  CDO72112.1 231 LLT-AEASELEVT 242
                 744.677776664 PP

>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   6.3e-38   3.8e-34       2     112 .]     298     448 ..     297     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 6.3e-38
                 EEEEE-SSSHHHHHHHHHHHHHH..............EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--C..STS-BS- CS
        HPPK   2 lalGsNlgdreanleealealee..............kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEkelgrer..rwgpRtl 81 
                 +a+G+Nlgdr an+e al+ le                vv++S +yet+p+   +qp+F+N++++vet+l+p++ll+ lk+iE+++gr++  r+gpR +
  CDO72112.1 298 IAVGANLGDRFANIEYALRLLEIpgadidnpvgeprvVVVDTSFMYETAPMyvaEQPRFINCACMVETNLEPRALLSFLKQIENAVGRVEsfRNGPRAI 396
                 99*******************545666777888875445799*********9988**********************************6577****** PP

                 EEEEEEET.....................EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  82 DlDillyg.....................ltlPhprlaeraFvlvplaelap 112
                 DlDi+ly+                     l++Phprl er+Fvl+pl ++ p
  CDO72112.1 397 DLDIVLYDslvidtrpesargnfdnlsgeLVVPHPRLSEREFVLRPLSDMIP 448
                 ***********************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 6331.46
//
Query:       CDO72113.1  [L=866]
Description: hypothetical protein BN946_scf184962.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-61  206.5   0.0    1.1e-60  205.2   0.0    1.7  1  Pkinase         Protein kinase domain
      2e-44  151.8   0.0    5.1e-44  150.5   0.0    1.6  2  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-39  136.0   0.4      3e-39  134.9   0.4    1.6  1  DUF3543         Domain of unknown function (DUF3543)
     0.0026   17.1   0.0      0.032   13.6   0.0    2.3  1  Kinase-like     Kinase-like
     0.0073   16.2   0.7      0.066   13.1   0.0    2.7  3  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.11   11.2   0.0       0.27   10.0   0.0    1.6  1  Pkinase_fungal  Fungal protein kinase
       0.16   10.7   0.0       0.23   10.2   0.0    1.1  1  UNC-79          Cation-channel complex subunit UNC-79


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   4.4e-64   1.1e-60       1     260 [.      36     337 ..      36     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 205.2 bits;  conditional E-value: 4.4e-64
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH......... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle......... 90 
                 y+ ++ lG+Gsf++Vy++++++t+++vA+K+++++  + k  ++++ Ei+ilk+l+h++i rl++v++ ++++yl++e++ gg+la++++         
  CDO72113.1  36 YVIVSDLGKGSFATVYRGYHEQTHQQVAIKTVSRSGLSPKLFDNLQGEIEILKSLSHRHITRLLDVIRAERNIYLIMEFCAGGDLANYIKkrgrvegle 134
                 567889*********************************999************************************************777777777 PP

                 ...............HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.............EEE-SGTTSEESSSSCSBCTTTSCG CS
     Pkinase  91 ...............rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.............lKitDFGlakelessskltsfvgts 161
                                ++g lse  ++++++q+++++++l ++++iHrD+Kp+N+L++  g              lK++DFG+a+ l +   +++ +g++
  CDO72113.1 135 yipspgaaptyyphpKSGGLSEIVVRSFLRQLARAIKFLRQRNLIHRDIKPQNLLLNPAGPdeyarghpvgvpvLKVADFGFARFLPQAMMAETLCGSP 233
                 77777776666666555666666**********************************63333445555788899************************* PP

                 GGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.......SHH...HHHTTS-HHHHHHHHHHT-SSGCCST CS
     Pkinase 162 eYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.......etkeklpeaseiseeakdllkkllkkdpkkRl 253
                  Y+APE+l++++y++k+D+Ws+G +lye+  gkppf+++++ e  +k+ d  + i k  +         + k +e + +++++k l++ llk+ p +R 
  CDO72113.1 234 LYMAPEILSYQKYDSKADLWSVGAVLYEMAVGKPPFRAQNHIELLKKIEDS-KGI-KFPDedpqaiaRAQAKGEEVKVVPQDIKMLIRALLKRIPAERA 330
                 *************************************88887766655555.222.22113444554667777777888******************** PP

                 THHHHHT CS
     Pkinase 254 taeellq 260
                  +e+   
  CDO72113.1 331 NFEQFFT 337
                 *999765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0     2e-47   5.1e-44       4     235 ..      39     298 ..      36     304 .. 0.93
   2 ?   -2.4   0.0      0.92   2.4e+03     225     255 ..     305     335 ..     295     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 2e-47
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..... CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..... 95 
                   ++lG+G+f++V++g+ +    +++++Va+Kt+ +++ + +  ++l  e++i+k+l+h++i +ll v+  e+++++++e+++gGdL ++++k+     
   CDO72113.1  39 VSDLGKGSFATVYRGYHE----QTHQQVAIKTVsRSGLSPKLFDNLQGEIEILKSLSHRHITRLLDVIRAERNIYLIMEFCAGGDLANYIKKRgrveg 132
                  578************999....999********445566666899999************************************************** PP

                  .................CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.............TTEEEE-STTTHEETTTSSEEEETT CS
  Pkinase_Tyr  96 .................ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.............nkvvkisDfGLardiekddeyvkke 163
                                   ++  l+   + sf  q+A+++++L +++l+Hrd+  +N Ll+                v k++DfG ar +    +  ++e
   CDO72113.1 133 leyipspgaaptyyphpKSGGLSEIVVRSFLRQLARAIKFLRQRNLIHRDIKPQNLLLNPagpdeyarghpvgVPVLKVADFGFARFL---PQAMMAE 227
                  ***************9999999999999*******************************99999*****999889*************...6666666 PP

                  SSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHH CS
  Pkinase_Tyr 164 eaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeely 235
                  +   +  +mapE+l+++k+ sk+D Ws G +l+E++  g+ p++  ++ e+l+k++++k ++ p++ p++++
   CDO72113.1 228 TLCGSPLYMAPEILSYQKYDSKADLWSVGAVLYEMAV-GKPPFRAQNHIELLKKIEDSKGIKFPDEDPQAIA 298
                  6666777***************************998.***************************9999886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.92
                  -BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 225 ekpekcpeelyelmkkcweedpeeRptfsel 255
                  e+ + +p++++ l++  +++ p+eR++f++ 
   CDO72113.1 305 EEVKVVPQDIKMLIRALLKRIPAERANFEQF 335
                  566778999*******************985 PP

>> DUF3543  Domain of unknown function (DUF3543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.4   1.2e-42     3e-39       3     251 .]     600     828 ..     598     828 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.2e-42
     DUF3543   3 edtklletleelaakadvvyefAevKfkql..iPlapsskeglgaeeaksesnsssaiedeeltpeaivslseealvLYvkalsllakamdiaskwWkk 99 
                 e+++ll+ leela+k++v+ ++A++++  +  +P++p  + ++  +++++   ++  + + +    + +  +  +++LY+  +s+ +k++d  +++ ++
  CDO72113.1 600 EEEELLSSLEELAQKTEVLEHWADEMYDYVkaFPQKPLPDPKQFSRRDGE---PERLAARRKNADIQAEYNAMTCVALYMLLMSFAQKGIDKLRNYHEH 695
                 5689***********************888889****9999777776664...333333333344556666889**********************777 PP

     DUF3543 100 kn..akkgekvvslrlnevvqwirerFnevleKaefvrlklqeaqkqlpedhpesaessseevslsegvtaekLiYDrAlemSraAAvnEltged..lk 194
                  +  +++ge ++s+ ++e++ w++e+F +++++a +v+++l ++                    + ++ ++++L+YDrAl++Sr+AA +El ++    +
  CDO72113.1 696 MQmrDPDGEWEASEGFDEALTWFKEHFIKCHDRAALVKTWLPAQY-------------------TGPPTFLDQLVYDRALQLSRTAARKELFDQAqsPD 775
                 7788889***********************************777...................46688**********************99865599 PP

     DUF3543 195 gCelaYetaiwmLealldedeeeenkkeeeldeeDrkviekliksiknRLkalrkkl 251
                 +Ce  Ye+++w+L+al+d+  +++n     + eeDr++i+++ik++k RL ++r+++
  CDO72113.1 776 ECEKLYEESLWCLYALQDDVLQTDN----PFIEEDRNTIATWIKRTKLRLVRCRARM 828
                 *******************999987....9************************997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.2e-05     0.032     143     283 ..     157     324 ..     148     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekggl.mlggf...taLvragtkvvlsevekgfaPpEllgsrggytrk...nktkmthklda 233
                  ++ r  l  ql r +  L+++ l+h +++++nlll++ g+  + +g     +  ++ + + +   +++     l+gs   y         k+  k d 
   CDO72113.1 157 IVVRSFL-RQLARAIKFLRQRNLIHRDIKPQNLLLNPAGPDeYARGHpvgVPVLKVADFGFARFLPQAMMAETLCGS-PLYMAPeilSYQKYDSKADL 252
                  5667777.78999999**********************985245554112355666666776777788888888888.44554311145678899*** PP

  Kinase-like 234 WqlGlviyriwclklPltlate.eakeew.....................kfklckkipekvkaLlkkfLql 283
                  W +G+v y ++  k P+  +   e  ++                      k + +k +p+ +k+L++ +L++
   CDO72113.1 253 WSVGAVLYEMAVGKPPFRAQNHiELLKKIedskgikfpdedpqaiaraqaKGEEVKVVPQDIKMLIRALLKR 324
                  ****************97654312222225678888899999999999999999999999999999999987 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.64   1.6e+03      32      84 ..      75     122 ..      52     134 .. 0.70
   2 !   13.1   0.0   2.6e-05     0.066     149     183 ..     159     193 ..     139     206 .. 0.79
   3 ?   -1.8   0.2      0.91   2.3e+03      85     140 ..     612     665 ..     595     674 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.64
                 S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  32 raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr 84 
                 ++   +++e ++l+ L+ + + +   v+     +e +   ++++e++ g +l++
  CDO72113.1  75 KLFDNLQGEIEILKSLSHRHItRLLDVIR----AERN--IYLIMEFCAGGDLAN 122
                 57778889999999999888866666666....2333..478999999999988 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC.. CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvdpd 183
                  + +l++la+      ++ l+H+D++p+Nll++p+
  CDO72113.1 159 VRSFLRQLARAIKFLRQRNLIHRDIKPQNLLLNPA 193
                 34488888888888999***************943 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCC CS
         APH  85 klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllase 140
                 ++  ++l+++++++ ++ +a+ q + +   +  f+++d e++r+ ++++++++++e
  CDO72113.1 612 AQKTEVLEHWADEMYDYVKAFPQKPLP--DPKQFSRRDGEPERLAARRKNADIQAE 665
                 556678888888888999998888533..344444456888888888777777666 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.27     312     399 ..     166     254 ..     158     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilit....dskke.......gerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrh 395
                     l+ aIk    L  + +++HrDi  +N+l++    d   e       g +   ++D+ +a  l +   +  a++  G + +ma e+l+ ++     
      CDO72113.1 166 LARAIKF---LR-QRNLIHRDIKPQNLLLNpagpD---EyarghpvGVPVLKVADFGFARFLPQ---AMMAETLCGSPLYMAPEILSYQKYDSKA 250
                     4444443...44.899**************44443...35555666666777999999999996...34456799********999987777777 PP

  Pkinase_fungal 396 DLES 399
                     DL S
      CDO72113.1 251 DLWS 254
                     7766 PP

>> UNC-79  Cation-channel complex subunit UNC-79
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.9e-05      0.23     422     490 ..     604     675 ..     597     681 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.9e-05
      UNC-79 422 aestlekl..ktefvcdWlkevikthyevfvscLlPhPaeyarvgghwdtlasrts..qlkeglnrllcLvPY 490
                   s+le+l  kte++ +W +e+   + ++f +  lP P +++r +g+++ la r +   ++  +n + c+  Y
  CDO72113.1 604 LLSSLEELaqKTEVLEHWADEMY-DYVKAFPQKPLPDPKQFSRRDGEPERLAARRKnaDIQAEYNAMTCVALY 675
                 56899998778999999*98865.699************************9876511577777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5889.60
//
Query:       CDO72114.1  [L=570]
Description: hypothetical protein BN946_scf184962.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-37  128.3   0.1    5.2e-37  126.7   0.1    1.9  1  Plus-3    Plus-3 domain


Domain annotation for each model (and alignments):
>> Plus-3  Plus-3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.1   2.9e-41   5.2e-37       1     109 []     228     331 ..     228     331 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 2.9e-41
      Plus-3   1 dlnkirlsRskleklleepffedavkgcfvRvkigeeretgqpvyrlaqivgvkeeekgkpyklkkgkkttnkylklrhgkseksfrlekvSnspftee 99 
                 dlnk+r++R++++k++++p+fed++kg++vR++ig+e  ++qpvyr++++v++ +++  kpyk+  +++ +n+ l+l+hg s+++f+++kvSn+pf+++
  CDO72114.1 228 DLNKCRVTRTQIAKFCMAPWFEDYIKGAWVRYLIGQE--GNQPVYRICEVVDI-AANLVKPYKV--DEQLVNQELELKHGGSTRKFTMDKVSNAPFEQR 321
                 79*********************************76..89************.689*******..6789**********999**************** PP

      Plus-3 100 Eferwkktle 109
                 Efer++k++e
  CDO72114.1 322 EFERLVKSCE 331
                 *******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1739  (0.0969937); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 3432.15
//
Query:       CDO72115.1  [L=386]
Description: hypothetical protein BN946_scf184962.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-29  102.3  11.9    2.2e-29  101.6  11.9    1.4  1  Sof1         Sof1-like domain
    4.5e-21   74.8   9.9    2.1e-07   31.5   0.2    5.7  6  WD40         WD domain, G-beta repeat
    3.5e-07   30.4   0.0      0.046   14.0   0.0    3.7  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> Sof1  Sof1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6  11.9   3.7e-33   2.2e-29       1      87 []     295     381 ..     295     381 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 3.7e-33
        Sof1   1 AkAseklgvlsaReraaleyreaLkekykhmpeikrIarhRhvPkaikkakkekremkeaekrKeenrrkhskkgsvprkserkkkv 87 
                 A+As+klg+++aReraa+eyre+Lk ++k+  e+++Iar Rh+Pk+++ka+++kr+m+ea++ Kee+rrkhs++g+ + k+erkk+v
  CDO72115.1 295 AHASDKLGIITARERAAIEYRESLKARWKADAEVNKIARTRHLPKPVYKAAQLKRTMLEAQRVKEERRRKHSRAGESKPKAERKKVV 381
                 89************************************************************************97777******86 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0031        19       5      34 ..      11      42 ..       8      46 .. 0.66
   2 !   20.0   0.1   1.6e-07   0.00094       5      38 .]      55      88 ..      51      88 .. 0.81
   3 ?    1.0   0.0      0.15   9.2e+02      12      38 .]     139     166 ..     119     166 .. 0.64
   4 ?   -1.9   0.0       1.3   7.5e+03      15      34 ..     184     204 ..     183     208 .. 0.62
   5 !   31.5   0.2   3.5e-11   2.1e-07       3      38 .]     215     251 ..     213     251 .. 0.94
   6 !   17.5   0.0   9.5e-07    0.0057      18      38 .]     274     294 ..     261     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0031
                EEEESS.SSEEEEE.EETTSSEEEEEETTSEE CS
        WD40  5 rtltGH.ssvtsla.fspdgawlasGsdDgtv 34
                 +l+GH + v  +a  +   + +asGs+Dg +
  CDO72115.1 11 ASLEGHvDAVETMArKPETLDIVASGSWDGGL 42
                678999777864433222225599*****966 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.6e-07
                EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                ++ ++H++ v++++f +  ++l+ ++ D+++++Wd
  CDO72115.1 55 HIEDAHKGkVSGVCFGQQDRLLS-CGVDRNIKLWD 88
                445699555************95.666*******9 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.15
                 SEEEEEEETTSSE.EEE.EETTSEEEEEE CS
        WD40  12 svtslafspdgaw.las.GsdDgtvriWd 38 
                  vt+++f+   a  las Gs D++  ++d
  CDO72115.1 139 TVTAVRFNLAEASvLASiGS-DRSFTLYD 166
                 38888543333332442378.99988876 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.3
                 EEEEETTSSE..EEEEETTSEE CS
        WD40  15 slafspdgaw..lasGsdDgtv 34 
                 +l++sp  +   l+ +s+D+++
  CDO72115.1 184 ALSWSPTFPTtvLL-ASEDHNL 204
                 56666666555566.4668876 PP

  == domain 5  score: 31.5 bits;  conditional E-value: 3.5e-11
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++++GH   v s++++p g  ++sG++D+tvriW+
  CDO72115.1 215 PTQIYKGHvAAVMSCDWCPTGLEFVSGGWDRTVRIWK 251
                 7899****999*************************6 PP

  == domain 6  score: 17.5 bits;  conditional E-value: 9.5e-07
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 +  d ++++sGsdDg+vriW+
  CDO72115.1 274 YTGDARFVLSGSDDGNVRIWK 294
                 5678899*************6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.7e-06     0.046       6      70 ..      29      92 ..      27     101 .. 0.88
   2 !    6.0   0.0    0.0024        15      35      89 ..     134     187 ..     117     231 .. 0.87
   3 ?    0.1   0.0      0.17     1e+03      29      67 ..     218     252 ..     185     270 .. 0.60
   4 !    5.9   0.0    0.0027        16      33      77 ..     261     305 ..     229     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.7e-06
  ANAPC4_WD40  6 tmDLiAlatedgellvfRlngqr.vwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70
                 t D++A ++ dg l+v+ ++ +r ++++ ed+++++v+++++ ++++lL  +++  +++l d+++g
   CDO72115.1 29 TLDIVASGSWDGGLIVHDVSRRRsLFHI-EDAHKGKVSGVCFGQQDRLLSCGVD-RNIKLWDSHKG 92
                 78*****************986637777.9********************9985.56899999887 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  35 dkedsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++ ++v++++++  + ++La   sd +  l+d+ +gk  + + ++     + l+W
   CDO72115.1 134 PTSTETVTAVRFNLAEaSVLASIGSDRSFTLYDIRTGKAERRIIMQMR--SNALSW 187
                  6778999999999765379*******************9998888777..466666 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.17
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  ++    +++   v s  W p g  ++ +  d +vr+ + 
   CDO72115.1 218 IY----KGHVAAVMSCDWCPTGLEFVSGGWDRTVRIWKE 252
                  33....336677888889999988888888888888765 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0027
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                   ++k+ ++v s  +  d ++   + +dg+vr+ +a+  + +  ++
   CDO72115.1 261 YHTKRMQRVMSTLYTGDARFVLSGSDDGNVRIWKAHASDKLGIIT 305
                  4457888999999********************999877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2711.53
//
Query:       CDO72116.1  [L=426]
Description: hypothetical protein BN946_scf184962.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3214.64
//
Query:       CDO72117.1  [L=138]
Description: Class II peroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-06   26.9   0.0    4.3e-06   26.6   0.0    1.1  1  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.4e-10   4.3e-06       3      78 ..      52     138 .]      50     138 .] 0.75

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.4e-10
                 HHHHHCCCCTTTHCH...HHHHHHHHHHTT.............SSTTSCHHH.TCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHH CS
  peroxidase   3 afvkaalkadrdmgp...sllrlafhdcfv.............gGcdgsvll.lepektapaNaslrkgldvldaikakleaacpgvvScADl 78 
                 +++++ l + +++     + lrl+fhd+++             gG+dgs+ + ++ e + ++N +l+++++  +++ ++++      v++ADl
  CDO72117.1  52 DDLQKNLFDGGRCNEeahESLRLTFHDAIAispaleaqgifggGGADGSIAIfSHIETSFHPNIGLDEVVEKQRPFLERHN------VGVADL 138
                 56666666655565522256********9999**********99******8857888899*******76666655555544......777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1015.08
//
Query:       CDO72118.1  [L=339]
Description: hypothetical protein BN946_scf184962.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2596.20
//
Query:       CDO72119.1  [L=499]
Description: hypothetical protein BN946_scf184962.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.037   13.9   0.0    1.6  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.1e-06     0.037       6      44 ..      12      50 ..      12      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-06
  F-box-like  6 dEiLlqIFsyL..ppsdLlrlalVCrrWrrvaldtplLWrr 44
                +E+L +I ++   + + L+r+a+V+r + + a     LW +
  CDO72119.1 12 PEVLREIMRHNahNEQALARCARVSRAFSDPA--IEVLWEE 50
                799*****985324558*************99..5589975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 3296.88
//
Query:       CDO72120.1  [L=796]
Description: hypothetical protein BN946_scf184962.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-44  150.0   0.0    1.1e-43  149.0   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
    7.4e-24   84.2   0.0    4.3e-23   81.8   0.0    2.2  2  Helicase_C  Helicase conserved C-terminal domain
    1.1e-18   67.2   0.0    2.4e-18   66.1   0.0    1.6  1  DUF4217     Domain of unknown function (DUF4217)
      0.009   15.4   3.7        2.6    7.3   2.3    2.9  2  CMS1        U3-containing 90S pre-ribosomal complex subunit
  ------ inclusion threshold ------
        7.1    5.5  11.2        1.2    8.0   1.6    2.2  2  DUF913      Domain of Unknown Function (DUF913)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   0.0   3.2e-47   1.1e-43       1     175 [.      76     242 ..      76     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 3.2e-47
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 tdiQa+++p+ l+g+dvl+aa+TGsGKTlaflipvl+i+y++    ++g  ali++PtreL+ ++l+ +  + +    ++ l+igg++ +d++++l ++
  CDO72120.1  76 TDIQAKSLPISLKGKDVLGAARTGSGKTLAFLIPVLEILYRRkwGPQDGLGALIISPTRELIFDVLRSIGGYHS---FSAGLVIGGKNLKDERERL-SR 170
                 89***************************************977699999***************999998888...567899*************.** PP

                 CSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ++i+v+tpgrl++++ +t  ++ +++++lVlDEadr+ld+gf +++ ++l++l       +++rq++++SAT ++++ +
  CDO72120.1 171 MNILVATPGRLLQHMdQTIGFESDNLQMLVLDEADRILDMGFHRTLTALLSHL-------PKSRQTLLFSATQTESIAD 242
                 ***************788889********************************.......68899*******9977665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.71   2.6e+03       6      44 ..     216     259 ..     213     274 .. 0.60
   2 !   81.8   0.0   1.2e-26   4.3e-23       2     110 ..     281     390 ..     279     391 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.71
                 HHHHHHHTTTTSEEEEEESSHH.HHHH.HHHHHHHT...TSTEE CS
  Helicase_C   6 llellkleeeggkilifvntid.rlek.vklllekk...gikva 44 
                 l++ll++  + +++l+f+ t++ ++ + ++l l+     gi+ +
  CDO72120.1 216 LTALLSHLPKSRQTLLFSATQTeSIADlARLSLKDPvriGIEET 259
                 66677677889999999999995443333443333244455555 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 1.2e-26
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 kl+ l  ++ +++ + k+l+f+ +++++   ++ +++ + gi  + lhg+ +q  r++++++f + ++ vL atd+a+rG+d+p+v+ V ++d+p++ +
  CDO72120.1 281 KLDVLWSFI-KSHLQTKTLVFMSSCKQVRFvFETFCKMHpGIPLLHLHGKQKQMTRLATFQRFTSMKHAVLFATDIAARGLDFPSVDWVLQVDAPEDAE 378
                 566677776.7899************99545444444448*********************************************************** PP

                 HHHHHHTTSSST CS
  Helicase_C  99 syiqriGRtgRa 110
                 +yi+r+GRt+R+
  CDO72120.1 379 TYIHRVGRTARY 390
                 ***********7 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   6.6e-22   2.4e-18       1      61 []     432     492 ..     432     492 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 6.6e-22
     DUF4217   1 iqqkleslcakdrdlkelAqkAfvsyvraYsvhlake..iFrvkkLdlealAksfGLleaPki 61 
                 i ++l++l ++d+++k+l+q+Afvsy+r  s +l k+  iF++++L++e++A+++GL+++Pki
  CDO72120.1 432 IANQLQKLAFQDPEIKYLGQRAFVSYLR--SIYLHKDksIFKLDELPVERYAAALGLPGMPKI 492
                 568*************************..555555555***********************8 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0018       6.4     174     209 ..     167     203 ..     162     209 .. 0.90
   2 !    7.3   2.3   0.00072       2.6      12      43 ..     696     727 ..     682     745 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0018
        CMS1 174 kksrigiavGtpgRildLl.eeeslsvdeLkrivlDa 209
                 + sr+ i v tpgR+l+ + ++  ++ d+L+ +vlD 
  CDO72120.1 167 RLSRMNILVATPGRLLQHMdQTIGFESDNLQMLVLDE 203
                 56899*************977788***********96 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00072
        CMS1  12 nkekgkkkksekkRskkkerkkgklketqDvk 43 
                 +k+ +k kk+ekkR++k+++++ +  +  Dv 
  CDO72120.1 696 DKAVAKEKKREKKRKRKEREREENYDSEGDVA 727
                 34445555555555444444444444444544 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.6   0.00034       1.2     217     312 ..     429     556 ..     419     581 .. 0.50
   2 ?    2.3   2.5     0.019        67     241     298 ..     666     759 ..     655     790 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00034
      DUF913 217 asnlGssfdELvRhhpsLktaiikavikmlarvvelgkeka......akllved..................................assasskseas 275
                  ++++++++ L+ + p++k    +a ++ l+ +  l k+k+            +                                             
  CDO72120.1 429 TQSIANQLQKLAFQDPEIKYLGQRAFVSYLRSIY-LHKDKSifkldeL-----PveryaaalglpgmpkikffskemakkkknasravG---------- 511
                 5678888888888888888888888888888875.5555554444220.....144466666666777777776555432222221111.......... PP

      DUF913 276 ssssssetkeeek..ssededvemeda.........eeetesesdese 312
                   +++s+t+ e++  ss+de++  e +         +++++ +s++s+
  CDO72120.1 512 --EVNSTTRPEQNqeSSDDESESSE-EssgeddsvpQKPQDGQSEHSA 556
                 ..22222222222222222222222.1233332222222222222222 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.019
      DUF913 241 avikmlarvvelgkeka....akllved......assasskseasssssssetkeeek...............................ssededveme 298
                  v++  ++v+e g+++a     kl   d      a   ++k+ +++  +++e++ ee+                               + +++++e e
  CDO72120.1 666 EVFRSAEEVKEAGRKFAeserGKLQEADvvdkavA---KEKKREKK-RKRKEREREENydsegdvamgptvaglddddgyvspdfdlpsE-SESEDEWE 759
                 67788899999999999777655555445543220...22222222.2222222222222233344555555544444443333333311.11111222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1757  (0.0979977); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 5134.19
//
Query:       CDO72121.1  [L=1385]
Description: hypothetical protein BN946_scf184962.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-64  215.5   0.0    8.3e-27   93.9   0.0    3.6  3  AAA_5      AAA domain (dynein-related subfamily)
      0.003   18.0   0.2          5    7.5   0.0    4.1  4  AAA_16     AAA ATPase domain
      0.005   17.0   0.1         12    6.1   0.0    3.5  3  AAA_lid_7  Midasin AAA lid domain
  ------ inclusion threshold ------
      0.018   15.3   0.0        1.2    9.4   0.0    2.7  2  CbbQ_C     CbbQ/NirQ/NorQ C-terminal
       0.03   14.8   0.0       0.11   12.9   0.0    2.1  1  AAA        ATPase family associated with various cellular act
      0.079   13.4   0.1       0.51   10.8   0.0    2.2  2  MCM_lid    MCM AAA-lid domain
       0.22   11.6   0.1        1.1    9.4   0.0    2.1  2  AAA_2      AAA domain (Cdc48 subfamily)


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   3.3e-30   8.3e-27       1     138 []      72     228 ..      72     228 .. 0.93
   2 !   26.4   0.0   2.2e-09   5.5e-06      13     105 ..     454     546 ..     451     581 .. 0.88
   3 !   91.1   0.0   2.4e-29   6.1e-26       1     131 [.     771     907 ..     771     914 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 3.3e-30
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE... CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll... 95 
                 dv+Lv +pG   ++la  ++++ln+e+e v+l+rd  e++lk++rei+ +g+ ++vdsp+vra+++g+il+l++ve+ae+ ++++L++lle+r++l   
  CDO72121.1  72 DVFLVSQPGPYARRLALTFCRLLNSEYEFVALHRDVGETELKQGREIRpGGNLVYVDSPAVRAVKSGRILILEGVEKAERGIMPILNNLLENREMLvkw 170
                 69999****************************************************************************************987222 PP

                 ...-SSSEEE---...................-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  96 .leeggelvkaknddller.............frviatanpld.rslnelspalrsRf 138
                  l++g++ v+  ++ ll++             frvia a p++ + + +l+p++rsRf
  CDO72121.1 171 nLDDGTHIVHPHRYALLNQdehfkafipahknFRVIAIAAPVPpYPGYPLDPPFRSRF 228
                 25688999999999855555*************************************9 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.2e-09
                 HHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE- CS
       AAA_5  13 selaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvka 105
                 + l + ++a+l+ e+e v +++ +  ++l++rr+++ +g ts+++spl + a +g+++ l + + +  ++++sL +l+ +r++ l e ++ v+ 
  CDO72121.1 454 TLLLRTFSAMLGYELEDVHMYKELGGRELIMRRKVEeGGATSWEPSPLIEGAWQGRMVHLSGMD-VIGSTAGSLARLMQDREIELWEKKRIVRR 546
                 678999******************************9***************************.7789***************9888887765 PP

  == domain 3  score: 91.1 bits;  conditional E-value: 2.4e-29
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 +++L+G++G+gK+++++rl+++l+r+ ey+ql+rdtt ++l  ++ ++ng  +++dspl ra++ g+i+++DE ++a  +v++++ sl  + +l+l +g
  CDO72121.1 771 HLVLLGNQGVGKNKVVDRLCQLLGRPREYIQLHRDTTVNQLMFQTVLENGVIKYTDSPLLRAIKLGRIIIIDEADKAAEHVVAIFRSLAGHGQLSLSDG 869
                 799************************************************************************************************ PP

                 SSEEE---.............-EEEEEESS--...-TT-TT CS
       AAA_5 100 gelvkaknddller.......frviatanpld..rslnels 131
                 +++   k+ +   +       fr+i +an++   + +n   
  CDO72121.1 870 RRVRETKERE---DdvvvhpnFRLILLANRPGypFLGNHFL 907
                 9988777754...1234578*********998665555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.94   2.4e+03      94     164 ..     101     166 ..      67     172 .. 0.63
   2 !    7.5   0.0    0.0019         5      25      69 ..     770     808 ..     755     833 .. 0.68
   3 ?    3.8   0.0     0.026        66     137     164 ..     837     864 ..     827     872 .. 0.85
   4 ?    0.2   0.1      0.34   8.8e+02      81     127 ..    1101    1160 ..    1081    1169 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.94
      AAA_16  94 leawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 ++ +r+  e++l++++e+++     l ++ + ++ ++ + +   +l+l+ +++a+ + + +l +Ll+++e+
  CDO72121.1 101 VALHRDVGETELKQGREIRPG--GNLVYVDSPAV-RAVKSG--RILILEGVEKAERGIMPILNNLLENREM 166
                 555555555666655555555..33333322333.333323..6999999999999999999999998775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                 e ++l G++GvGK ++v++l + l + +      ++ ql+++++ 
  CDO72121.1 770 EHLVLLGNQGVGKNKVVDRLCQLLGRPR------EYIQLHRDTTV 808
                 7899*****************7666652......33333344444 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.026
      AAA_16 137 lvlvlDdlqwadeaslqllaaLlrlles 164
                  ++++D++++a e+  +++++L+  ++ 
  CDO72121.1 837 RIIIIDEADKAAEHVVAIFRSLAGHGQL 864
                 59********************998775 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.34
      AAA_16   81 llrqlldeaesaeleawrekleeala....avpelagaea.........srllellkrll 127 
                  l +++ d+ +++++e +r++l ++l+    +++e++g  a          +l++ll +l+
  CDO72121.1 1101 LKNDVPDHVKERARELARQELARRLEelnmSAGEAKGYTAlfsaveghiAQLHDLLENLA 1160
                  223333334444444455555555553333444444444477666666666666666665 PP

>> AAA_lid_7  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.44   1.1e+03      64     100 ..     246     283 ..     229     287 .. 0.81
   2 !    6.1   0.0    0.0047        12      12      59 ..     610     655 ..     604     689 .. 0.75
   3 !    5.7   0.0    0.0065        17       6      59 ..     931     981 ..     928     996 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.44
   AAA_lid_7  64 g.flspsvreeifleavdvFaaslstqedrlrvaevia 100
                 g ++s+ +  + ++ ++d+++++  ++e+r+++  v  
  CDO72121.1 246 GsTPSQGADSQFYQKLRDIILSTQIASESRHALDAVAR 283
                 24789999999***********9999999998877665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0047
   AAA_lid_7  12 llasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsal 59 
                 ++++++++l+++ ++ rs  +s   +  ++r++++R L++ +rR+++ 
  CDO72121.1 610 CPTPIVNTLLKFADKYRSSMTSD--AVQKNRKLGTRSLIRIARRVAKF 655
                 56677777777777777777666..559****************9764 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0065
   AAA_lid_7   6 lqskf.pllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsal 59 
                 l++   +l+++++ +l++++++lr+++++     +   + slR+Ll++ r ++a 
  CDO72121.1 931 LSQLApKLSEDLILRLVAAFHDLRKAYEAG----TVTYPYSLRELLNLVRHMQAY 981
                 66666558999****************998....99***********99988765 PP

>> CbbQ_C  CbbQ/NirQ/NorQ C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00048       1.2       5      53 ..     604     655 ..     600     673 .. 0.82
   2 ?    2.9   0.0     0.052   1.3e+02       1      46 [.     927     974 ..     927    1010 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00048
                 HHHHHT--HHHHHHHHHHHHHHHTTBTTT...BSS---HHHHHHHHHHHTTT CS
      CbbQ_C   5 varesgldeevakkLVklAneiRnlkegg...LeegvSTRlLvyaAkLiasg 53 
                 + +++g+++ ++++L k+A + R    ++    +  + TR L++ A+ +a++
  CDO72121.1 604 ILSQTGCPTPIVNTLLKFADKYRSSMTSDavqKNRKLGTRSLIRIARRVAKF 655
                 45679******************9998887668889**********999987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.052
                 HHHHHHHHH.T--HHHHHHHHHHHHHHHTTBTTT.BSS---HHHHHHH CS
      CbbQ_C   1 Eaeivares.gldeevakkLVklAneiRnlkegg.LeegvSTRlLvya 46 
                 E++++++ + +l+e+++ +LV++ +++R+  e g  +   S R L + 
  CDO72121.1 927 ERKLLSQLApKLSEDLILRLVAAFHDLRKAYEAGtVTYPYSLRELLNL 974
                 77888999999*****************88877659999999998764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.4e-05      0.11       2      75 ..     773     861 ..     772     900 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.4e-05
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS..STTHHHHHHHHHHHHHHHTS.TS.EEEEEETGGGHHHHH.........T CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellsk..yvgesekkirelfkeakeka.kp.silfiDEidalaksr.........s 75 
                 +l G+ G+GK  ++  +++ lg  +e++++   + +++  ++   e+ + ++ ++    a k   i++iDE+d+ a++          +
  CDO72121.1 773 VLLGNQGVGKNKVVDRLCQLLGrpREYIQLHRDTTVNQlmFQTVLENGVIKYTDSPLLRAiKLgRIIIIDEADKAAEHVvaifrslagH 861
                 799******************96677999999999988666677778888887773223354669*********988765554444443 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2     3e+03      53      65 ..     643     655 ..     622     661 .. 0.80
   2 ?   10.8   0.0    0.0002      0.51      13      60 ..     933     979 ..     930     981 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHH CS
     MCM_lid  53 esliRLseAlAkl 65 
                  sliR+++ +Ak 
  CDO72121.1 643 RSLIRIARRVAKF 655
                 59******99996 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0002
                 TT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHH CS
     MCM_lid  13 kikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLse 60 
                 ++ Pklse+    l+ a+++lRk  e + + ++p + R+L  l+R  +
  CDO72121.1 933 QLAPKLSEDLILRLVAAFHDLRKAYE-AGTVTYPYSLRELLNLVRHMQ 979
                 689********************995.5699*************9655 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.92   2.3e+03      60     105 ..     129     163 ..     122     169 .. 0.82
   2 ?    9.4   0.0   0.00041       1.1       7     116 ..     773     872 ..     770     877 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.92
                 TTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHHH- CS
       AAA_2  60 ppgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqileg 105
                 +p+  +++ g i+ l+ ++K+ +           g++ +L ++le+
  CDO72121.1 129 SPAVRAVKSGRILILEGVEKAER-----------GIMPILNNLLEN 163
                 566666777779***********...........999999999887 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00041
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTS.........EEEEETGGG------------- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegG.........ivllDEidKihpkessgadvSr 92 
                  llg++gvGk+ + + l +ll     ++ i +   +       +  +e+ v +          + ++          i+ +DE dK+++          
  CDO72121.1 773 VLLGNQGVGKNKVVDRLCQLLGR--PREYIQLHRDTTVNqlmfQTVLENGVIK----------YTDSPllraiklgrIIIIDEADKAAE---------- 849
                 57888999999999999999873..3333333222222201113333333333..........33333555555556************.......... PP

                 HHHHHHHHHHHH--EE-------E CS
       AAA_2  93 egVqrdLLqileggtltdkqgrkv 116
                   V+ ++  +  +g+l+ ++gr+v
  CDO72121.1 850 -HVVAIFRSLAGHGQLSLSDGRRV 872
                 .88888888888888888888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.44
# Mc/sec: 9510.19
//
Query:       CDO72122.1  [L=529]
Description: hypothetical protein BN946_scf184962.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-38  131.8   0.0    4.2e-38  131.5   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
     0.0081   14.7   0.0      0.019   13.5   0.0    1.5  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   4.7e-42   4.2e-38       2     362 ..     131     516 ..     130     517 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 4.7e-42
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                     v+nL+s +++g++g++ ++++a ++ +  g++++g+  +yg++d++ +le+++a+flg        +eaa+++++ ++ + +++++++k  +gd 
     CDO72122.1 131 TVTNLASYNFTGLAGNEDIKAAAVETLRkyGLGSCGPPGFYGTQDVHIQLEQDIADFLG--------TEAAILYSQAFSTISSVIPAFCK--RGDI 216
                    689*************9999999999999******************************........9*********************9..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE......TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEE CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk......ktkvilvesphNPtGtvatleeleklldlakkynlllf 185
                    i++++ +   ++++l++s+++v+ y        h+d+e+le  l++  +++        +++i++e+++  +G++ +l++l++l   +kky+ +l+
     CDO72122.1 217 IVADRGVNFAIQKGLQISRSTVRWYD-------HNDMESLEHVLESVEKERRkrkgplTRRFIVTEGIFDHDGAMSDLPKLVEL---KKKYKYRLI 302
                    **************************.......************977666689999999************************...********* PP

                    EEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 186 vDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrl 281
                    +De  + +  g     +t  ++ e  n+   gs++  +++ G   G+++g++ vv+++r+  ++f +s++++a+++ a+s    + +++    ++l
     CDO72122.1 303 LDESVSFGSVG-----RTGRGLTELYNVPASGSVANGLSSCG---GFCAGSSIVVNHQRINGTSFVFSAAMPALLTVAASEGINILRNTPSILSTL 390
                    ****9999999.....55556666678899************...*************************************************** PP

                    HHHHHHHHHHHHHSTEEEECCS..CSSEEEEEETHH..................................CHHHHHHH...HHHTCTEEEEEGGGG CS
  Aminotran_1_2 282 qkrrkelrdeLaelglkvlasq..sgmflltdlsae..................................takelskk...Lleevgvyvtpgtsf 338
                    q++ + +r+ L++ + ++++s+  s++++l+   +                                   ++k l+++    l + gv +t+ +  
     CDO72122.1 391 QENVRAVRAILDRVDCIHIPSHpaSAVIHLQIRWPTlqvpthttsspsklsksnplsvkprdppqfnvelEEKLLQDVvdeALAQ-GVMITRAKRL 485
                    ********************988899***99888889********9999999999999999999988885444444446664445.7777776666 PP

                    TS......TTEEEEEC.TTS-HHHHHHHHHH CS
  Aminotran_1_2 339 tv......pgrlRitv.Aglteeeleelvea 362
                    +       + ++R+ + A+l+++e+e++++ 
     CDO72122.1 486 RGqelievRPSIRLAItAALSRKECEKAANV 516
                    55777777667****************9975 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.1e-06     0.019      56     175 ..     179     306 ..     173     314 .. 0.71
   2 ?   -3.5   0.0      0.32   2.9e+03      74     114 ..     327     367 ..     325     385 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-06
                      HHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT............T CS
  Cys_Met_Meta_PP  56 vleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike............n 137
                       le+ ia+  g+eaa+++s   ++i+++i a++k Gd iv+++ +    +  ++k l+ +  +v+++d +d+e+le+++++             
       CDO72122.1 179 QLEQDIADFLGTEAAILYSQAFSTISSVIPAFCKRGDIIVADRGV----NFAIQKGLQISRSTVRWYDHNDMESLEHVLESvekerrkrkgplT 268
                      79**************************************99866....455555666666666777776666666665542222222222222 PP

                      EEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 138 tklvylEtptnpllkvvDiekiaklakkagvlvvvDnt 175
                       + + +E + +    + D++k+++l kk +  +++D +
       CDO72122.1 269 RRFIVTEGIFDHDGAMSDLPKLVELKKKYKYRLILDES 306
                      34666777777777777777777777777777777765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.32
                      SSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHH CS
  Cys_Met_Meta_PP  74 ssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkk 114
                      +sG  A  ++    + aG+ ivv+++  +gt+ +++  ++ 
       CDO72122.1 327 ASGSVANGLSSCGGFCAGSSIVVNHQRINGTSFVFSAAMPA 367
                      57777777777777788999999999999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3619.49
//
Query:       CDO72123.1  [L=851]
Description: hypothetical protein BN946_scf184962.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1778  (0.0991689); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 5108.77
//
Query:       CDO72124.1  [L=332]
Description: hypothetical protein BN946_scf184962.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2512.15
//
Query:       CDO72125.1  [L=507]
Description: hypothetical protein BN946_scf184962.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-08   32.6   0.6    1.2e-07   31.8   0.6    1.4  1  Myb_DNA-binding  Myb-like DNA-binding domain
    0.00014   22.0   0.0    0.00014   22.0   0.0    3.4  3  Cir_N            N-terminal domain of CBF1 interacting co-rep
     0.0027   17.9   0.4     0.0076   16.5   0.4    1.8  1  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.6     2e-11   1.2e-07       1      45 [.     431     480 ..     431     481 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2e-11
                      CSSSBHHHHHHHHHHHHH..HT..TCHHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkk..hG..nrWkkIaerlg.gRtekqcrsrwrny 45 
                      +++W+  E++lL++++++   G  nrW+kI++ ++  Rt+ q+ sr ++y
       CDO72125.1 431 KQAWSVSEQHLLERLLEEipEGekNRWSKISKAMNgRRTARQVASRVQKY 480
                      689***************66557788*********77***********99 PP

>> Cir_N  N-terminal domain of CBF1 interacting co-repressor CIR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.3e-08   0.00014       1      24 [.      11      34 ..      11      47 .. 0.84
   2 ?   -1.8   0.4      0.63   3.8e+03      22      32 ..     141     151 ..     129     154 .. 0.65
   3 ?   -3.4   6.7         2   1.2e+04      20      33 ..     270     283 ..     266     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.3e-08
                SS-TTSHHHHHHHHHHHHHHHHHH CS
       Cir_N  1 SWHPgllkNqerVWkaEqkaleEk 24
                S+HP  ++N+erV+++E++a  + 
  CDO72125.1 11 SYHPYRRDNIERVRRDEEEARRRA 34
                89*****************97665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.63
                 HHHHHHHHHHH CS
       Cir_N  22 eEkkkieerkk 32 
                 ++ ++++e+++
  CDO72125.1 141 ADIERLKELRR 151
                 45567777766 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHH CS
       Cir_N  20 aleEkkkieerkke 33 
                  + E++ki+e+kk 
  CDO72125.1 270 RAREREKIRELKKR 283
                 56788888888875 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4   1.3e-06    0.0076       1      38 [.     434     476 ..     434     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklveky....gndWknIaealn.rRtpkqcfdr 38 
                     W++ E+ +L +l e+      n W++I++a+n rRt+ q+  r
      CDO72125.1 434 WSVSEQHLLERLLEEIpegeKNRWSKISKAMNgRRTARQVASR 476
                     9999***********77643469********779999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3474.00
//
Query:       CDO72126.1  [L=181]
Description: hypothetical protein BN946_scf184962.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-21   75.5   2.7    1.6e-19   70.2   2.3    2.2  1  Polysacc_synt_4  Polysaccharide biosynthesis


Domain annotation for each model (and alignments):
>> Polysacc_synt_4  Polysaccharide biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   2.3   9.1e-24   1.6e-19       1     186 [.      20     145 ..      20     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 9.1e-24
  Polysacc_synt_4   1 aEislavkvlerrevpcnlLvFGlghesllwkslnkggrlvlleeddeivekvkkefpeleayevkY.ktkvsdadeLlsaakkeaecrpvqnl 93 
                      +E+++avk++e++++++nlL           +++ ++++l+l+++ddei+e+  kefpel   e +Y k+ v+d+d L+s+ +k          
       CDO72126.1  20 IEKQFAVKAVEHAQTYWNLL-----------EKV-NPRELRLTKMDDEIFEHAMKEFPELA--ENNYeKLLVIDEDWLKSESGK---------- 89 
                      699*****************...........***.7899*********************4..5578799**************.......... PP

  Polysacc_synt_4  94 lasdckLalrdLPnevyeekWDvilvDaprgfaeeapgrmediytagvlaRarkseeyseetdvfvhdvqrkvekafseeFlceeiavnregl 186
                                        ++W        r f+++++++++d y++g l+R+++++eyse++++fv+++q          F+  eia+nr gl
       CDO72126.1  90 ------------------KRW--------RDFIQQYEKKIQD-YNFGSLIRTDARQEYSETNTIFVTRIQ----------FYVFEIARNRLGL 145
                      ..................9**........*************.***************************..........**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2033  (0.113392); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1229.44
//
Query:       CDO72127.1  [L=311]
Description: hypothetical protein BN946_scf184962.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-34  119.5   0.9    4.9e-32  111.0   0.3    2.1  2  adh_short        short chain dehydrogenase
    2.1e-34  119.1   0.1    1.5e-21   77.0   0.1    2.4  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      1e-06   28.8   0.1    1.6e-06   28.1   0.1    1.2  1  KR               KR domain
     0.0032   16.7   0.1     0.0046   16.1   0.1    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.021   15.4   0.3      0.058   14.0   0.3    1.8  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.021   14.7   0.3       0.03   14.2   0.3    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.029   13.7   0.0      0.046   13.0   0.0    1.3  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
       0.75    8.6   3.8        1.6    7.6   2.0    2.2  3  Dak1             Dak1 domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.3   2.2e-35   4.9e-32       1     148 [.      39     194 ..      39     209 .. 0.93
   2 !    7.1   0.0    0.0015       3.3     150     174 ..     219     243 ..     217     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 2.2e-35
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTT..SHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvt..dreevealvekavkklgkldvLvnNAGitgsgpfsel 96 
                 kv++vtG++sGIG  ia +++++Gakv++++r+e++l+e+ + l ++   + ++i +D++  +++ ++al ++++++  k+++LvnN G ++ +pf ++
  CDO72127.1  39 KVAVVTGGGSGIGSMIASAYVQNGAKVYIASRKEKQLKEMSEALTKKgPGSCHYIVADISvqSKAGCDALADAIKARESKIHILVNNSGASWGAPFDNV 137
                 89*********************************************9889999999998778999********************************* PP

                 SHHH.HHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGGTSB-TTBHH CS
   adh_short  97 seee.wervievNltgvflltravlpaml....kqssGrIvnvsSvagkvpvagvaa 148
                  e+e w++++++N++++f +t+a++p +     + + Gr++n+sSvag    a+++ 
  CDO72127.1 138 PEKEgWDKILSLNVKSIFYMTAALTPLLAkdatSFEPGRVINISSVAGITTTAQGSK 194
                 ***************************9977666788***********988887765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHGGGTEEE CS
   adh_short 150 sAsKaavagltrslakelaptgirv 174
                 ++sKaav++lt  la  lap+ i+v
  CDO72127.1 219 GTSKAAVNHLTILLATTLAPKFITV 243
                 58*******************9998 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   6.9e-25   1.5e-21       4     137 ..      48     191 ..      42     207 .. 0.88
   2 !   39.7   0.0   1.7e-13   3.9e-10     133     231 ..     210     300 ..     202     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 6.9e-25
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH.-HHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflet.sree 94 
                   sgIG  iA a+ ++Ga+v ++ ++e++ k+  e+l+++++ +  +    + V++++ ++al+++++++  k++ilvnn g +    +pf ++ ++e+
    CDO72127.1  48 SGIGSMIASAYVQNGAKVYIASRKEKQlKEMSEALTKKGPGSchYivADISVQSKAGCDALADAIKARESKIHILVNNSGASWG--APFDNVpEKEG 142
                   8**************************999999999999865444235555789999**************************9..*****9789** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC......CEEEEEEEGGGTSBSTT CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg......gsivnlssvgaervvpn 137
                   +d++l+ n++s+f+++ a+ pl+++       g+++n+ssv++  ++++
    CDO72127.1 143 WDKILSLNVKSIFYMTAALTPLLAKDatsfepGRVINISSVAGITTTAQ 191
                   *********************887777999***********99877655 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 1.7e-13
                   SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEE CS
  adh_short_C2 133 rvvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvv 229
                     +p+    g++Kaa+++lt  lA  l+pk i+v    p+ +    + g+k  ++ +e l++  p+gr+g p+++a +alfLas++ +y++G+++v 
    CDO72127.1 210 DFIPDCWTDGTSKAAVNHLTILLATTLAPKFITVF---PSKMT---SFGLK--QHGEEGLADGNPFGRIGHPRDMAGVALFLASPAGAYVSGTHIVL 298
                   55777788899******************999874...44443...34444..7789999************************************* PP

                   ST CS
  adh_short_C2 230 Dg 231
                   Dg
    CDO72127.1 299 DG 300
                   *9 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   7.3e-10   1.6e-06       4     146 ..      42     192 ..      40     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7.3e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-.EEEE----TT..-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealga.evevvaaDvs..dkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 ++tGG  g+G  +a   +++ga+ + + sR+++   + k++ ++l+++g  +++++ aD+s  +k+   al ++ika+e++i+  ++  g++  +++++
  CDO72127.1  42 VVTGGGSGIGSMIASAYVQNGAK-VYIASRKEK---QLKEMSEALTKKGPgSCHYIVADISvqSKAGCDALADAIKARESKIHILVNNSGASWGAPFDN 136
                 89*******************96.789999944...445566777777644667777666611667789*****************************9 PP

                 -.-HHHHHHHHTTTTHHHHHHHHHTTT........S--SEEEEEEEHHHHH--TT- CS
          KR 100 m.taedleqvlapKvkGawnLhelled........esldffvlfSSiagllgsagq 146
                 + ++e ++++l+  vk +  +  +l++         +   ++ +SS+ag++ +a+ 
  CDO72127.1 137 VpEKEGWDKILSLNVKSIFYMTAALTPllakdatsFEPGRVINISSVAGITTTAQG 192
                 84567799999999998877777766554433322222346777888877766554 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1     2e-06    0.0046       2      63 ..      42      97 ..      41     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-06
                     EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--T CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdv 63
                     +vtG+g  iGs + +  +++  +k+++ +r+E++l e+++ l+++   +        +++d+
       CDO72127.1 42 VVTGGGSGIGSMIASAYVQN-GAKVYIASRKEKQLKEMSEALTKKGPGSCH-----YIVADI 97
                     69*********988887765.5789****************9877666322.....234443 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   2.6e-05     0.058       2      49 ..      42      85 ..      39      86 .. 0.87
   2 ?   -2.5   0.0       3.5   7.9e+03      18      61 ..     112     125 ..     106     131 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqek 49
                vv  Gg+ ig + A+a+ + g+kV++  r++k l    +e+s++l++k
  CDO72127.1 42 VVTGGGSGIGSMIASAYVQNGAKVYIASRKEKQL----KEMSEALTKK 85
                45558889**************************....8888888775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.5
                 HHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSE CS
   Pyr_redox  18 laelgkkVtvversdkllrllDeeaskilqeklekngievllnt 61 
                 +++  +k++                              +l n+
  CDO72127.1 112 IKARESKIH------------------------------ILVNN 125
                 455555555..............................54444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   1.3e-05      0.03       2      44 ..      40      84 ..      39     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                EEEE.--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N  2 vavi.GaGt.mGagiaavfasagleVvlvdiseealekalekiek 44
                vav+ G G  +G+ ia++ +++g +V +  ++e++l++  e+++k
  CDO72127.1 40 VAVVtGGGSgIGSMIASAYVQNGAKVYIASRKEKQLKEMSEALTK 84
                67664555459****************************999987 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.046       5      77 ..       6      79 ..       2      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
                   HHHHHTT.--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHH CS
  THF_DHG_CYH_C  5 lgrlvkg.eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeit 77
                   lg+++ g  +  + + p+ + ++   +  +++gk +vv G ++ +g+ +a    +++a V ++ +k k+l+e+ 
     CDO72127.1  6 LGEMAFGkARGPREAKPTQISDFSIPALFDVKGKVAVVTGGGSGIGSMIASAYVQNGAKVYIASRKEKQLKEMS 79
                   666666644567777777778887788899****************************************9976 PP

>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.0   0.00071       1.6      26      51 ..      36      62 ..      26      69 .. 0.80
   2 ?   -0.3   0.0      0.18     4e+02     223     247 ..     109     128 ..      60     131 .. 0.71
   3 ?   -2.8   0.0      0.99   2.2e+03     193     208 ..     247     262 ..     236     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00071
                -TTS-EEEEEEEESSTTTTG.GGBSBT CS
        Dak1 26 kkgkValisgGGSGHePaha.gfVGkg 51
                 kgkVa+++gGGSG   + a  +V +g
  CDO72127.1 36 VKGKVAVVTGGGSGIGSMIAsAYVQNG 62
                589***********8777652466655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
                 HHHHHH.....TT-EEEEEEEE-BS CS
        Dak1 223 leklledkelkkgdevvllvNglGg 247
                  +++     +++++++ +lvN+ G+
  CDO72127.1 109 ADAI-----KARESKIHILVNNSGA 128
                 2222.....334889999****998 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.99
                 TEEEETE-TTS---SE CS
        Dak1 193 deielGlGiHgEpGve 208
                 +   +Gl  HgE+G+ 
  CDO72127.1 247 KMTSFGLKQHGEEGLA 262
                 566799999****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2087.13
//
Query:       CDO72128.1  [L=261]
Description: hypothetical protein BN946_scf184962.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-68  228.9  11.9      6e-68  228.7  11.9    1.0  1  Thaumatin  Thaumatin family
  ------ inclusion threshold ------
      0.078   12.9   0.0       0.18   11.8   0.0    1.6  1  PQQ        PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> Thaumatin  Thaumatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7  11.9   6.7e-72     6e-68       1     214 []      26     261 .]      26     261 .] 0.89

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 6.7e-72
                 E-SSS-EE.....EE.EETTT.........EEEEE-TT-EEEEE--.-..SEEEEEEECEEE-.TTS..EECCS--TTBSS-S..S-.--SS--EEEEE CS
   Thaumatin   1 Nkcsftvw.....pailtnag...sealektgfelepgesrtlsvpakw.sgriwgRtgCsfd.ssg..sCatGdcggkleCk..gaggappatlaeft 85 
                 N+c+ft++     pai+t+ +   +++ + tg+e  +++s++++vp++w +griw+R++C+f+ + g  sC+ G+c+g leC+  +++g+ppatlaeft
  CDO72128.1  26 NNCPFTICilscrPAIFTDLNvgsATPAQPTGWEQGAYQSVSFYVPNNWaAGRIWARRDCDFStNPGpnSCLDGGCNGGLECDphTGTGVPPATLAEFT 124
                 899999975555689999886554444559*******************99************7445435*************8888999********* PP

                 ECECCC..EEEEEEE-TT-BSS-EEEEE-S.----EE-S-CCCC--GGGE........ETTEE--HHHHH....--HHHH-SCGGG...G--..--HHH CS
   Thaumatin  86 leekkekkqdfYdvslvdGynlpvsitpae.ckvaecaadlnkaCpaelkvkrkdsegkvvaCksaCeaf....nsdeyCCtgeyatpetCk..pteys 177
                 l+ + +++ d+Ydvslv Gynlpv+i++++ c+va+c +dl ++Cpa+lk ++ ds+g +v+C+saCea      ++ +CCtg+++tp+tC+  ++ey+
  CDO72128.1 125 LSPD-GSNSDWYDVSLVAGYNLPVRISNNKgCHVADCPVDLGPNCPAPLK-GPFDSTGFPVGCRSACEAGlgdpVNNPNCCTGTHNTPATCPpsGVEYY 221
                 *986.568*******************6556*******************.99****************9765444459*************77789** PP

                 HHHHHH-TTSBSSTT-HCCC-..EEE..ETT--EEEEE-- CS
   Thaumatin 178 klfkkaCpdaysYayddasst..ftc.skkkadytvtfcp 214
                 ++fk++Cp++y Yayd++s t  +tc  +++adytvtfcp
  CDO72128.1 222 SYFKSNCPNSYVYAYDESSGTalWTCpGTSQADYTVTFCP 261
                 ******************99667***98899********8 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05      0.18       7      25 ..     228     246 ..     223     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                 ETTSEEEEEETTTCCEEEE CS
         PQQ   7 sadGylyAlDadTGkvlWr 25 
                 +++ y+yA+D ++G+ lW+
  CDO72128.1 228 CPNSYVYAYDESSGTALWT 246
                 8999***********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1987.67
//
Query:       CDO72129.1  [L=474]
Description: hypothetical protein BN946_scf184962.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-41  141.4   0.0    4.8e-41  140.7   0.0    1.2  1  ThiF             ThiF family
    0.00035   20.8   1.3     0.0037   17.5   1.3    2.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00039   20.8   0.1    0.00091   19.6   0.1    1.6  1  NAD_binding_7    Putative NAD(P)-binding
     0.0034   17.3   0.0      0.007   16.3   0.0    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
      0.031   13.8   0.1      0.057   13.0   0.1    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.072   12.4   0.3       0.13   11.5   0.3    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
        0.1   12.2   0.0       0.18   11.3   0.0    1.3  1  MTS              Methyltransferase small domain
       0.11   12.0   0.2        0.2   11.2   0.2    1.4  1  DAO              FAD dependent oxidoreductase
       0.12   11.5   0.3        0.2   10.9   0.3    1.3  1  FAD_binding_3    FAD binding domain


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   2.4e-44   4.8e-41       2     217 ..      97     347 ..      96     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 2.4e-44
                 HHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   2 srqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritde 100
                 +r++a++ge+ ++k+r+ +v++vG+Gg+Gs+++++L++sG++k++lvD+D++ ls lnR+  ++ +d+G+pK++++++al+++   vev a  e + ++
  CDO72129.1  97 ARNYAFFGEEAMAKIRKGTVVVVGCGGVGSWAAVMLVRSGISKIRLVDFDQVTLSSLNRHATATLADVGTPKVKCIERALKKFSRIVEVDARIELWRKD 195
                 699***********************************************************************************************8 PP

                 CS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEE.EE.....CCS-ECTSS-...............TGGS.EECCCCEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.....xxxxxxxxxx...............xxxxxxxxxxxxxx RF
        ThiF 101 tvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvi.ip.....gktgcyeCld...............psstedptekkvpl 178
                 t   +ll ++D+V+da+Dni++++ + ++c+ + i + +++ +g++++ + + i+     + ++  +  +               +             
  CDO72129.1 196 T-GGDLLAGADWVIDAIDNITTKVDLLKYCHDNNIRVFSSMGSGAKCDPTRVqISdisytMYDPLARAVRrrlrlegvssgvpvvY------------- 280
                 7.67************************************************6433334444444444445555555444444330............. PP

                 HH.........................HHHCT........E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCC CS
                 xx.........................xxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 179 ct.........................siagn........ipaiatttavvaglaalellkllsgkeklens 217
                                            +            +p++++++a++++ +a+ +l  + gk+ ++n 
  CDO72129.1 281 -StevpgevkllplpeeefqkgnvkelG---VfddfrvriLPVLGPLPAIFGLNIATYILCEIAGKP-INNP 347
                 .033333333333445554444443331...24446667799************9999998887776.4444 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.3   1.8e-06    0.0037       1      96 [.     116     231 ..     116     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..................TTTCEEEEE--TTT...HHHHHHHHHTTSSEE CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka..................lgvrfeaialdaen...yeavLaallkegdlv 73 
                      v+++G+G+vG+ +a +l+r++    +i ++d+++  l  l  +a                  l++   ++++da     ++++   ll+++d v
       CDO72129.1 116 VVVVGCGGVGSWAAVMLVRSGIS--KIRLVDFDQVTLSSLNRHAtatladvgtpkvkcieraLKKFSRIVEVDARIelwRKDTGGDLLAGADWV 207
                      89******************977..899999999888888887788899999*9999999985555566666666522246778899******* PP

                      EE-SSGG.GHHHHHHHHHHHT-EE CS
  Sacchrp_dh_NADP  74 vnlsppi.ssldvlkaCietgvhy 96 
                      ++++ +i    d+lk+C+++ +++
       CDO72129.1 208 IDAIDNItTKVDLLKYCHDNNIRV 231
                      *******8888********99876 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   4.6e-07   0.00091       3      89 ..     109     231 ..     107     242 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.6e-07
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleag.akvtvvapevkeele..................................elvklaeeelekd..... 58 
                     ++++ +v+vvG G v+   +  l+++g  k+ +v+ +    ++                                                    
     CDO72129.1 109 AKIRKGTVVVVGCGGVGSWAAVMLVRSGiSKIRLVDFDQVTLSSlnrhatatladvgtpkvkcieralkkfsrivevdA-----------Rielwr 193
                    688999**********************99******9963333366666777777777555444444444443333333...........034444 PP

  NAD_binding_7  59 .......legadlviaatddrelneriaeaakarrilv 89 
                           l+gad vi a+d+   +  + +++++++i v
     CDO72129.1 194 kdtggdlLAGADWVIDAIDNITTKVDLLKYCHDNNIRV 231
                    4455556999***********************99976 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.5e-06     0.007       1      98 [.     115     222 ..     115     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.5e-06
                 EEEEE--SCCHHHHHHHHHHTT-.EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-...........HHHHCCCHHCEEEES-HHHHHC-SEEEE-S- CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagl.eVvlvdiseealekalekieksleklvekgklk...........eeeveaalarisfttdleeavdadlviEavv 87 
                 +v v+G+G +G+  a +++++g+ +++lvd ++ +l + +++++++l+ +    k+k             ev+a+++  + +t  + +++ad+vi a+ 
  CDO72129.1 115 TVVVVGCGGVGSWAAVMLVRSGIsKIRLVDFDQVTLSSLNRHATATLADVG-TPKVKcieralkkfsrIVEVDARIELWRKDTGGDLLAGADWVIDAI- 211
                 699*******************856***********999999999887753.3344445555555544566777777777777777777******997. PP

                 SSHHHHHHHHH CS
     3HCDH_N  88 EnlelKrkvfa 98 
                 +n++ K ++++
  CDO72129.1 212 DNITTKVDLLK 222
                 78899988876 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.9e-05     0.057       2      43 ..     115     157 ..     114     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideekvdklnsgk 43 
                     +++v+G G vG   a++l + g  ++ +vD d+ + ++ln+  
      CDO72129.1 115 TVVVVGCGGVGSWAAVMLVRSGiSKIRLVDFDQVTLSSLNRHA 157
                     589*******************77999*************976 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   6.6e-05      0.13      21      86 ..     109     173 ..     101     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
                  CEETCB---EEEEESTSHHHHHHHHHHHHTT.-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHH CS
  AlaDh_PNT_C  21 GgvpgvepakvlviGgGvaGlqAiatakglg.akVtvlDvrparleqles.lgakfvevlksqeella 86 
                  +++   ++++v+v+G G +G  A+ + ++ g  k++++D ++ +l  l+    a+  +v + + + ++
   CDO72129.1 109 AKI---RKGTVVVVGCGGVGSWAAVMLVRSGiSKIRLVDFDQVTLSSLNRhATATLADVGTPKVKCIE 173
                  445...59*********99999999999988468999***9999999998655555555444444444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.1e-05      0.18      26     102 ..     107     183 ..     105     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.1e-05
                 HCHCCTCSEEEEET-T.TSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEE CS
         MTS  26 tlpkelsgkvlDlGcG.aGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdliv 102
                 ++ k ++g+v+ +GcG +G  +a+++ +s   ++ lvd d   l s ++ ++a+ ++v + +  ++e +  kkf  iv
  CDO72129.1 107 AMAKIRKGTVVVVGCGgVGSWAAVMLVRSGISKIRLVDFDQVTLSSLNRHATATLADVGTPKVKCIERAL-KKFSRIV 183
                 567778999******649*********************************9999998888888888777.7776665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   9.9e-05       0.2       2      29 ..     116     146 ..     115     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.9e-05
                 EEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarrg...Vtllekg 29 
                 vv++G G +G+++A  L r g   + l++ +
  CDO72129.1 116 VVVVGCGGVGSWAAVMLVRSGiskIRLVDFD 146
                 9****************99998898888755 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   9.8e-05       0.2       3      31 ..     115     144 ..     113     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.8e-05
                    EEEEE--SHHHHHHHHHHHHTTHH.EEEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvr.vvlve 31 
                    +V++VG G +G  +a +L + G++  +lv+
     CDO72129.1 115 TVVVVGCGGVGSWAAVMLVRSGISkIRLVD 144
                    69*********************9556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3607.48
//
Query:       CDO72130.1  [L=841]
Description: hypothetical protein BN946_scf184962.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5669.25
//
Query:       CDO72131.1  [L=297]
Description: hypothetical protein BN946_scf184962.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.6e-132  438.1   2.2   1.1e-131  437.9   2.2    1.0  1  Vps26       Vacuolar protein sorting-associated protein 26
    0.00079   19.5   1.7       0.37   10.9   0.0    3.3  4  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Vps26  Vacuolar protein sorting-associated protein 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.9   2.2  1.2e-135  1.1e-131       3     274 ..       8     279 ..       6     280 .. 0.99

  Alignments for each domain:
  == domain 1  score: 437.9 bits;  conditional E-value: 1.2e-135
                 TSEEEEEEETTTTTS-EEEEE-GGG-EEEEEEE-TT--EEEEEEEEESST--EEESEEEEEEEEEEEETTTGGGEEEEEEEEEEEE-SEEESS-EEEEE CS
       Vps26   3 ttidieikldneeerktvdvktekgkkeklkvyedgeslsGvvtirlkdskkvehqGikveliGqiellydkgnsvdfislvkdlakpGelqesksfpf 101
                 +++d++ikl+ e+erk+v++k ek k+ + +vy+dge ++G+vt+r++d+kk+ h+Gikve+iG+iel+yd+g++++f+sl+++la pGe++++++f+f
  CDO72131.1   8 SPVDVDIKLEGEDERKKVEIKGEKDKMISCPVYYDGEPVAGQVTVRVRDGKKLAHEGIKVEFIGSIELFYDRGHHHEFLSLSQELAAPGEMRQAQTFDF 106
                 799************************************************************************************************ PP

                 EETS----S--EE-SSEEEEEEEEEEEE-SSS-EEEEEEEEE---B---S----EEEEEEETTTEEEEEEES-SEEETT-EEEEEEEEEEE-S-EEEEE CS
       Vps26 102 efkklekryesYkGknvklrYvlrvtvvRklkditkekdlivhefttaPevnksvklevGiedclhiefeyskskyhLkdvivGkiyfllvrikiksme 200
                  fk++ek+yesY+G nvklrY+++vt++R++ d+tke dl+vh++ + P++n+s+k+evGiedclhiefey+kskyhLkdvivGkiyfllvrikik+me
  CDO72131.1 107 LFKNVEKQYESYQGINVKLRYFVKVTISRRIADVTKERDLWVHSYRMPPDSNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHME 205
                 *************************************************************************************************** PP

                 EEEEEEEEESSTTCEEEEEEEEEEEEEEES---TT-EEEEEEEGGGG-----EEEETTTEEEEEEEEEEEEETT CS
       Vps26 201 lslikrestGlaenvakdsetiakyeimDGasvrgesiPirlflsgydltPtlrdvnkkfsvkyylnlvlvded 274
                 ls+i+re+tG+ +n++++seti+k+eimDGa+vrge+iPirlfl g+dltPt+rdvnkkfsv+yylnlvl+de+
  CDO72131.1 206 LSIIRRETTGAPPNQYNESETITKFEIMDGAPVRGETIPIRLFLGGFDLTPTFRDVNKKFSVRYYLNLVLIDEE 279
                 ************************************************************************98 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   4.1e-05      0.37      10      44 ..      38      74 ..      35      93 .. 0.82
   2 !    5.7   0.0    0.0016        14      93     127 ..     103     137 ..      82     149 .. 0.84
   3 ?   -0.5   0.0      0.13   1.2e+03       2      24 ..     172     194 ..     171     225 .. 0.82
   4 ?   -2.7   0.0      0.63   5.6e+03     114     127 ..     266     279 ..     256     293 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.1e-05
                EEEETT--EEEEEEE-CCCCTT...CEEEEEEEEEEE CS
  Arrestin_N 10 evyhpgetvdGkvlleteelkka..rkvkielsgkar 44
                +vy+ ge+v+G+v+++ ++ kk+  +++k+e+ g ++
  CDO72131.1 38 PVYYDGEPVAGQVTVRVRDGKKLahEGIKVEFIGSIE 74
                69*************8776665422789999988775 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0016
                 EEEEEE---TTS--SECSGEEEEEEEEEEEEECCC CS
  Arrestin_N  93 afpFsfelPknlpsSfeGkaggvrYevkvtldrpw 127
                 +f F f+  ++   S +G   + rY+vkvt+ r  
  CDO72131.1 103 TFDFLFKNVEKQYESYQGINVKLRYFVKVTISRRI 137
                 7888888888899999***************9975 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.13
                 EEEES-SEEEEETT--EEEEEEE CS
  Arrestin_N   2 tieldkrdevyhpgetvdGkvll 24 
                 +ie++ ++  yh  + + Gk+ +
  CDO72131.1 172 HIEFEYNKSKYHLKDVIVGKIYF 194
                 68899889999******999875 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.63
                 EEEEEEEEEEECCC CS
  Arrestin_N 114 gvrYevkvtldrpw 127
                 +vrY++ ++l +++
  CDO72131.1 266 SVRYYLNLVLIDEE 279
                 56666665543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2000.98
//
Query:       CDO72132.1  [L=365]
Description: hypothetical protein BN946_scf184962.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    8.5   7.5         72    4.6   0.0    3.6  3  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.004        72       2      24 .]     252     277 ..     251     277 .. 0.91
   2 ?   -0.2   0.0      0.15   2.6e+03      12      24 .]     314     326 ..     308     326 .. 0.84
   3 ?    3.6   2.9    0.0089   1.6e+02       1      22 [.     331     353 ..     331     354 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.004
   zf-C2H2_4   2 kCpi..CgksFsskka.LlrHlkthH 24 
                 +Cp   Cg s + k++ ++ H++t H
  CDO72132.1 252 RCPMlgCGISLPAKDSaWRGHFRTAH 277
                 799999******99998******988 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
   zf-C2H2_4  12 skkaLlrHlkthH 24 
                 s +++ rHl+++H
  CDO72132.1 314 SVESIGRHLLNVH 326
                 5667889***999 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0089
   zf-C2H2_4   1 fkCpiCgksFsskka.LlrHlkt 22 
                 ++Cp+Cg     +++  +rH++t
  CDO72132.1 331 HRCPVCGVEKAQRYSsCQRHINT 353
                 68****88888555559999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.58
# Mc/sec: 1892.49
//
Query:       CDO72133.1  [L=157]
Description: hypothetical protein BN946_scf184962.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.8   0.1       0.03   14.3   0.1    1.3  1  MatC_N    Dicarboxylate carrier protein MatC N-terminus


Domain annotation for each model (and alignments):
>> MatC_N  Dicarboxylate carrier protein MatC N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.7e-06      0.03      24     115 ..       3      92 ..       1     117 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-06
      MatC_N  24 nmgllalaaafligt.vllgldpkevlagfPadlfltlvavtylfaiarvnGtidlLvkvavravrgrvaaipwvlfllaalltalGalspaa 115
                  + ++a++++fl ++  +lg  + e++a   ++l   +  ++ + ++a + Gt+  L +   +      + +     ++ ++  a Ga++  a
  CDO72133.1   3 RIVAVAFIFSFLFASsEVLGAPAREIIARQIGNLQCNIDRLSIVAGLATTQGTLKKLSQQFAQSDPNSASSVES---AIDSISGAQGAIGVIA 92 
                 6789********9862689************************************9999876554444444444...4444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.53
# Mc/sec: 884.93
//
Query:       CDO72134.1  [L=600]
Description: hypothetical protein BN946_scf184962.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-25   88.7   0.0    2.3e-19   70.0   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.2e-19   70.3   0.0    2.5e-19   69.3   0.0    1.5  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   2.6e-23   2.3e-19       2     128 ..     126     323 ..     125     338 .. 0.89
   2 !   16.5   0.0   5.5e-07     0.005     186     253 ..     474     536 ..     466     538 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 2.6e-23
                    EEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB......CHH................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacin.....ddy................................... 54 
                    ++ +++G+pgs ++w +  ++p+ +     ++d+i++D+rGvg+++p+  c +       +                                   
     CDO72134.1 126 SVFLNPGGPGSPGKWLATQMGPYVQMLlgeDYDIIGFDPRGVGETEPRTQCFPspeahAAFiantplergfdvgpnltdpmnrehliqlqrhadal 221
                    799********************9999999*********************888777633377777777788899999999999************ PP

                    ...................SHHHHHHHHHHH..HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE.......CSSCCHHHHHHHHHHH CS
  Abhydrolase_1  55 ...................gtasvaddldri..ldalgddkltlvGhSmGGmialayaaeyperVkalvllga.......idpaaslieaqrqqak 122
                                       gt+s+a+d+++i  l   +d ++++ G S+G+ ++  +  ++p+rV ++vl+g        + pa+++++  +q+a+
     CDO72134.1 222 wqtkmqvcaqsmgdklrymGTVSIARDVEFIasLLDGKDAPINYYGLSYGTVLGQLLINMFPDRVGRVVLDGIvdavewtSLPAYKWERHLQQSAE 317
                    *****************************99899999999*********************************99988888888888887777776 PP

                    HHHCHH CS
  Abhydrolase_1 123 sfpdff 128
                    +  ++f
     CDO72134.1 318 TAYEMF 323
                    655555 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.5e-07
                    HHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSSHH CS
  Abhydrolase_1 186 lksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpk.krlvvisdagHlaf 253
                    + +  ++p+++s+++   l +      p+l++s t Dp++p  ++  la+ +++ +r++v + agH+a+
     CDO72134.1 474 HHWPVSPPERFSGPWNHTLSN------PILLVSNTADPITPMANGLLLADRFSGfSRHLVQDSAGHCAL 536
                    678889999999999999999......***************************************986 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   2.8e-23   2.5e-19      11     103 .]     469     563 ..     460     563 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 2.8e-23
  Abhydrolase_4  11 sllsCagwpvspqrprdestakg.aapvLllqnerDpaTPyegakklakalgg.avlvtvegeGHgalaagntCvdkavdaYLltGelpaddtvC 103
                    +   C++wpvsp +      +++ ++p+Ll++n+ Dp+TP++ +  la+++ g +++++++++GH+ala ++ C+   v+a++++G+lp++++vC
     CDO72134.1 469 TDWGCHHWPVSPPERFSGPWNHTlSNPILLVSNTADPITPMANGLLLADRFSGfSRHLVQDSAGHCALALPSLCMIMNVRAFFADGTLPDEGAVC 563
                    4445*******99998888776646*********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3838.15
//
Query:       CDO72135.1  [L=507]
Description: hypothetical protein BN946_scf184962.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-17   63.1   0.0    2.8e-16   59.9   0.0    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
    3.2e-05   24.0   0.1     0.0012   19.0   0.0    2.5  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.2e-20   2.8e-16       2     222 ..      52     437 ..      51     447 .. 0.69

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.2e-20
                    EEEEE-STTTCGGGGTTGHHHHHHHHT...........TSEEEEEEETTSTTSSSTTTGB......CHH........................... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd...........gfdvillDlrGvgySspapacin.....ddy........................... 54 
                    ++ +++G+pg  +v  + + +p++++            ++d+i++D+rG g+++pa  c +     + +                           
     CDO72135.1  52 SVFLNPGGPGAPGVSLATSSGPDFQQIvtygpfrivgeEYDIIGFDPRGIGETEPATQCYSnpaarQAFiantvldrgydvapdvgdpfnryhliq 147
                    799*******5555555555555555555555557************************777777733366666666677788888888999**** PP

                    ...........................SHHHHHHHHHHH.HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE...CSSCCHHHHHH. CS
  Abhydrolase_1  55 ...........................gtasvaddldri.ldalgddklt.lvGhSmGGmialayaaeyperVkalvllga...idpaaslieaq. 117
                                               gt +v +d+d+i +   g d l+  +G+S+G++i+ ++  + p+rV ++v +g    +++++ ++  + 
     CDO72135.1 148 tqrdadglyksqfeicdqtmgdrirymGTSTVVRDIDFItKLLDGEDALInFWGFSYGSAIGQYLVNMLPDRVGHVVIDGVldaVAWSSVPSYKWe 243
                    ***************************999*********633334445555*********************************999888886550 PP

                    HHHHHHHHCHHCHHHHHHHH..HHHHHHHHCCSCHHHHHHHHHHHHHH................................................ CS
  Abhydrolase_1 118 rqqaksfpdffdgyaadcar..npagplladelaaleqrhrlvdalkf................................................ 163
                    r+++    d    +  +ca+  ++++ l+ + + + e  ++ v a+++                                                
     CDO72135.1 244 RTWLVYTDDVYKLFMSECAKagPTQCALAKHANETGEDVLARVEAFVNdlyyeplavpnatlpgiltngrarvyimgslisptswpsaaseiaqal 339
                    445555555566666666552245666666666666666666666666666666666666666666666666666666666666666666666666 PP

                    .............................................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEE CS
  Abhydrolase_1 164 .............................................pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlapt 214
                                                                  d +   + s     s +++g +++  ++p+++++++ + l +      p 
     CDO72135.1 340 agngtamlnavnekdtkdlersavscndaapfappkpqqvideqlYDLAHVSRFSLAVVTSEPDAGCQFWPVTPPERFEGPWNRTLKN------PM 429
                    6666666666666666666666666666666666666666665332222222222233445555566666666666666666666666......66 PP

                    EEEEETTC CS
  Abhydrolase_1 215 lvisgtsD 222
                    l+is t+ 
     CDO72135.1 430 LIISNTHT 437
                    66666665 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0019        17      12      43 ..     403     435 ..     393     436 .. 0.78
   2 !   19.0   0.0   1.3e-07    0.0012      70     103 .]     433     466 ..     410     466 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
  Abhydrolase_4  12 llsCagwpvspqrprdestakg.aapvLllqne 43 
                     + C++wpv+p +  +   +++ ++p+L+++n+
     CDO72135.1 403 DAGCQFWPVTPPERFEGPWNRTlKNPMLIISNT 435
                    445******999998888776646999999997 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.3e-07
  Abhydrolase_4  70 geGHgalaagntCvdkavdaYLltGelpaddtvC 103
                    +++H++la ++ C  +av+aY+++G+lpa +tvC
     CDO72135.1 433 SNTHTSLALPSICKARAVRAYFANGTLPAVGTVC 466
                    468999999************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3685.83
//
Query:       CDO72136.1  [L=154]
Description: hypothetical protein BN946_scf184962.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0077   16.4   4.0     0.0085   16.3   4.0    1.2  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
  ------ inclusion threshold ------
      0.034   14.9   3.1      0.049   14.4   3.1    1.3  1  WAK_assoc        Wall-associated receptor kinase C-terminal
       0.13   12.1   7.6       0.21   11.5   7.6    1.3  1  betaPIX_CC       betaPIX coiled coil
       0.24   11.3   0.7       0.45   10.4   0.7    1.4  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
       0.28   11.5   3.8       0.33   11.3   3.8    1.1  1  DUF3619          Protein of unknown function (DUF3619)
        0.3   10.5   4.1       0.31   10.4   4.1    1.1  1  DUF4746          Domain of unknown function (DUF4746)
       0.32   11.7  17.5       0.42   11.3  17.5    1.1  1  DUF4398          Domain of unknown function (DUF4398)
       0.55    9.5   9.5       0.77    9.1   9.5    1.2  1  U79_P34          HSV U79 / HCMV P34
          1    9.6   9.0        1.3    9.3   9.0    1.1  1  Vfa1             AAA-ATPase Vps4-associated protein 1
        1.3    7.7   4.0        1.5    7.5   4.0    1.0  1  TSA              Type specific antigen
        2.3    7.5   9.5          3    7.1   9.5    1.1  1  DUF4407          Domain of unknown function (DUF4407)
        4.3    7.5  10.5        8.3    6.6  10.5    1.4  1  Zn_clus          Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   4.0   5.7e-06    0.0085      45     110 ..       4      67 ..       2     122 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.7e-06
      CENP-Q  45 lhslelLeaeiekeeralerdyeaLreLeknakaeare.rkeklkkehvllqesdseelslleassd 110
                  +++++Le+++e+++++ +++++  r+  ++a ++++e r + +k     ++esd+e++s +e++++
  CDO72136.1   4 TDAVKQLEQQLEQLKKKVAEEERVARRQAEEAARKREEeRAQAKK---RKAPESDDESDSGEEVEQE 67 
                 567788888888888887777777766555555555552444333...3577777777777777765 PP

>> WAK_assoc  Wall-associated receptor kinase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.1   3.3e-05     0.049      41     100 ..      45      99 ..       4     103 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.3e-05
   WAK_assoc  41 pvsesalkeleeeeskegleevLkkgFelewkeksseCseCeksgGrCgynqtseeftCl 100
                 +    +++++ e++++++ +e +++++ l     ++ C++C+++g rC ++  +++ tC+
  CDO72136.1  45 QA---KKRKAPESDDESDSGEEVEQELGLLVP--RRGCERCREKGVRCTFRPGKRNSTCV 99 
                 22...233444457889999**********99..79***************999999997 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.6   0.00014      0.21      42      79 ..       5      43 ..       2      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
  betaPIX_CC 42 devqelkqenkklkksl.eeEqkaRkdLEkvvrkllksi 79
                d v++l+q++ +lkk++ eeE+ aR++ E+  rk  ++ 
  CDO72136.1  5 DAVKQLEQQLEQLKKKVaEEERVARRQAEEAARKREEER 43
                99***********9887367777********99976655 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7    0.0003      0.45      13      39 ..       1      27 [.       1      29 [. 0.94

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
  HU-CCDC81_bac_2 13 isyeeAlqkiekeveelkqeLeeegrv 39
                     +s ++A++++e++ e+lk++  ee+rv
       CDO72136.1  1 MSATDAVKQLEQQLEQLKKKVAEEERV 27
                     6899********************997 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.8   0.00022      0.33       6      53 ..       3      50 ..       1      74 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
     DUF3619  6 ArkvaaaLdegaadlpediaeRLaaAReqAlarkkpeaaaravaaala 53
                A + +++L+++ ++l++++ae  ++AR+qA +++++++++ra a++  
  CDO72136.1  3 ATDAVKQLEQQLEQLKKKVAEEERVARRQAEEAARKREEERAQAKKRK 50
                6778899***********************988886644444444433 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.1   0.00021      0.31      60     124 ..       9      67 ..       3     112 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
     DUF4746  60 plevkveveeeeelveevsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveee 124
                 +le++ e+ ++     +v++ee++ + q++e+++++++e+ ++++ +a+e+++e++++e +ve+e
  CDO72136.1   9 QLEQQLEQLKK-----KVAEEERVARRQAEEAARKREEERAQAKKRKAPESDDESDSGE-EVEQE 67 
                 44444444444.....3333333333333333333322222222223333333333332.33333 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  17.5   0.00028      0.42      22      72 ..       3      52 ..       1      57 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
     DUF4398 22 ApaeleeAreaLaqAeaamaekdyeeAdhlaylAerdaelAearAkaakae 72
                A+++ ++ +++L+q ++++ae++   A++ a++A r+ e  +a+Ak++ka 
  CDO72136.1  3 ATDAVKQLEQQLEQLKKKVAEEER-VARRQAEEAARKREEERAQAKKRKAP 52
                67789999**********966555.5**********************995 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   9.5   0.00051      0.77     139     206 ..       6      66 ..       2      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00051
     U79_P34 139 cveklekegraldrkkaddeqrkrsgkqkekrkvedidkkkedekrkeeerkksdedkssdkkeelde 206
                  v++le++   l +k a++e+  r       r+ e+  +k+e+e+ +  +rk  ++d +sd+ ee+++
  CDO72136.1   6 AVKQLEQQLEQLKKKVAEEERVAR-------RQAEEAARKREEERAQAKKRKAPESDDESDSGEEVEQ 66 
                 577888888888888888888777.......8999****************************99876 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.0   0.00088       1.3      63     122 ..       5      65 ..       1      74 [. 0.61

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00088
        Vfa1  63 kkkkeleeeiekvkkeyeekqkkkkekekkk.kekdkkdkdkkkekekdkkkekekeeekk 122
                  + k+le+++e++kk++ e+++  +++ ++  ++++++  + kk k  ++++e+++ ee +
  CDO72136.1   5 DAVKQLEQQLEQLKKKVAEEERVARRQAEEAaRKREEERAQAKKRKAPESDDESDSGEEVE 65 
                 4567899999999999999888777666655223334444444445555555554433333 PP

>> TSA  Type specific antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.0     0.001       1.5     350     418 ..       4      72 ..       1      76 [. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
         TSA 350 sdslkdlykdlvklrrhagikkamekladqeeedaknqdkadckkaqgaeekskkdkkkeaefdlsmiv 418
                 +d +k+l ++l +l+++      + +  ++e    +++++a+ kk++  e   + d+++e e +l ++v
  CDO72136.1   4 TDAVKQLEQQLEQLKKKVAEEERVARRQAEEAARKREEERAQAKKRKAPESDDESDSGEEVEQELGLLV 72 
                 68999*********9988766555555444444445556699******999*************99988 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.5     0.002         3     189     241 ..       4      56 ..       2      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
     DUF4407 189 kaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaadd 241
                 +++ ++++++l++lk+k+ +++r+a+++ae a  ++e ++++a++++a ++dd
  CDO72136.1   4 TDAVKQLEQQLEQLKKKVAEEERVARRQAEEAARKREEERAQAKKRKAPESDD 56 
                 57789999999999999999999999999999888888877777777655554 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  10.5    0.0056       8.3       2      24 ..      76     102 ..      74     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0056
                 S-HHHHHCT---ST....SSSS-HHHH CS
     Zn_clus   2 aCdnCrkkKvKCda....kkPaCsnCk 24 
                 +C++Cr k v+C      ++ +C +C+
  CDO72136.1  76 GCERCREKGVRCTFrpgkRNSTCVECQ 102
                 799999999999996654444499997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3154  (0.175916); expected 358.6 (0.02)
Passed bias filter:                     1617  (0.0901891); expected 358.6 (0.02)
Passed Vit filter:                       308  (0.0171789); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 1157.40
//
Query:       CDO72137.1  [L=361]
Description: hypothetical protein BN946_scf184962.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-13   51.2   0.0    2.8e-13   50.1   0.0    1.6  1  rve             Integrase core domain
    2.2e-07   30.7   0.0    4.1e-07   29.8   0.0    1.5  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
  ------ inclusion threshold ------
      0.039   13.0   0.4        5.2    6.0   0.1    2.4  3  Ferrochelatase  Ferrochelatase


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   4.7e-17   2.8e-13      17     118 ..       7     107 ..       1     108 [. 0.94

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 4.7e-17
         rve  17 ipdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtl 115
                 +p+ gg + +lvvvd  ++  + +++ d  +as +++l  + v + +gv p  v+sD+gse++s+ fr + + l++r+ ft  ++p+  G  Er ++tl
  CDO72137.1   7 LPNSGGYSAILVVVDRLTKQGIFIPTHDTLTASELADLFVMHVFSKHGV-PSHVTSDRGSEFVSHFFRSLGKALDMRLHFTSGYHPEGDGQTERVNQTL 104
                 3688999******************************************.************************************************* PP

         rve 116 kde 118
                 ++ 
  CDO72137.1 105 EQY 107
                 985 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.8e-11   4.1e-07       1      52 [.     293     347 ..     293     349 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6.8e-11
                 EEEEEEEEEEEETTEEC..EEEEEEETTSTG..GGTEEEEGGGCSSHSHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgle..leYlVKWkglpy..sentWEpeenlekcfqelideFk 52 
                 ye+ +I+d+++d+ ++   l YlV+W g+    +e +W  +++l++  qel+  F+
  CDO72137.1 293 YEIAEILDSKIDRRRRScqLLYLVRWAGYEGtdEETSWILATELGHA-QELVADFH 347
                 7899*************************9984556*********88.*******9 PP

>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1   0.00087       5.2     171     213 ..      37      75 ..       4     115 .. 0.70
   2 ?    4.8   0.1     0.002        12     136     211 ..     117     197 ..      99     201 .. 0.77
   3 ?   -3.6   0.0      0.75   4.5e+03     208     236 ..     324     356 ..     317     357 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00087
                     HHHHHTTS-HC.C-EEEEEEE--BHHHHT.TT-SHHHHHHHHH CS
  Ferrochelatase 171 ikealeelpeekkakllfsaHglPeravkkkgdpYqqqveeta 213
                        +l++l     +  +fs Hg+P  + +++g  + ++  ++ 
      CDO72137.1  37 TASELADL----FVMHVFSKHGVPSHVTSDRGSEFVSHFFRSL 75 
                     55555554....36679***************98776654443 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.002
                     HHHHHHH..HH..TT-SSE.EEEE---TT-HHHHHHHHHHHHHHHTTS-HC.C-EEEEEEE--BHHHHT.TT-SHHHHHHH CS
  Ferrochelatase 136 eeleral..kk..kreape.vrvirqfydhpgyiealaesikealeelpeekkakllfsaHglPeravkkkgdpYqqqvee 211
                     +++ + l  ++   ++ap+ ++ i+ f+ ++gy  a++ + ++ l ++++++ a+ l   H++ +++++++  +Yq q ++
      CDO72137.1 117 DNWSKLLplAEftYNNAPNaTTGISPFFANKGYNPAISVHPERDLTSARAREFAVDLDELHSVLRQQITEAQARYQVQADK 197
                     55555554433554444443778************************984444788999*********999999*999776 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.75
                     HHHHHHHHHHHHT....TT-S..-EEEEEE---SS CS
  Ferrochelatase 208 qveetarlvaeal....glke..evelayqSrvGp 236
                       eet+ ++a +l    +     +++ ay S++Gp
      CDO72137.1 324 TDEETSWILATELghaqE--LvaDFHAAYPSKLGP 356
                     556777777778754432..044799999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2856.44
//
Query:       CDO72138.1  [L=236]
Description: hypothetical protein BN946_scf184962.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        9.6    6.1  15.6        1.6    8.6   6.6    2.6  3  betaPIX_CC   betaPIX coiled coil


Domain annotation for each model (and alignments):
>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.6     9e-05       1.6      42      76 ..       5      40 ..       2      52 .. 0.83
   2 ?    3.5   0.3    0.0034        61      47      68 ..     125     146 ..     110     152 .. 0.76
   3 ?   -3.3   0.1      0.48   8.6e+03      67      76 ..     168     177 ..     161     181 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 9e-05
  betaPIX_CC 42 devqelkqenkklkksl.eeEqkaRkdLEkvvrkll 76
                d v++l+q++ +lkk++ e+E+ aR++ E+  rk  
  CDO72138.1  5 DAVKQLEQQLEQLKKKVaEDERVARRQAEEEARKRE 40
                89***********9877478999******9999865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0034
  betaPIX_CC  47 lkqenkklkksleeEqkaRkdL 68 
                  +q ++k+ + l+eE   R +L
  CDO72138.1 125 TRQALHKMWRYLDEEVEVREEL 146
                 4677788888888888888776 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.48
  betaPIX_CC  67 dLEkvvrkll 76 
                 ++E vvr ++
  CDO72138.1 168 KMEAVVREVV 177
                 3555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2499  (0.139383); expected 358.6 (0.02)
Passed bias filter:                     1192  (0.0664845); expected 358.6 (0.02)
Passed Vit filter:                       184  (0.0102627); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 1614.91
//
Query:       CDO72139.1  [L=718]
Description: hypothetical protein BN946_scf184962.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-19   70.4   0.0      2e-19   69.7   0.0    1.4  1  Transposase_21  Transposase family tnp2
     0.0044   16.3   1.3     0.0062   15.8   0.0    1.8  2  Plavaka         Plavaka transposase
     0.0051   16.3   0.0     0.0085   15.6   0.0    1.2  1  DUF1258         Protein of unknown function (DUF1258)


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   3.4e-23     2e-19      28     155 ..     313     442 ..     285     484 .. 0.86

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 3.4e-23
  Transposase_21  28 rnvrlglatdGfnPfgsm..sssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkd.idvylePlvddlkelweeGvetydalkeekfn 119
                      ++ ++l  d fnPfg+    +s+s+  v l+ +nlPP l    +n+ l+ +ipGp++P+ d ++ y++Plvd+l+++w++Gv   da++   + 
      CDO72139.1 313 VHLVFSLFIDWFNPFGNKkaGKSHSIGGVYLVCLNLPPHLRYRPENIYLAGVIPGPTEPDVDqLNHYIRPLVDELLTIWHRGVYLSDATS--AWL 405
                     567778899******98622579************************************97659********************999975..689 PP

  Transposase_21 120 lravllwtindfPalstlsGlst.kgklacvtCkknt 155
                     +ra+l+  + d Pal +++G +  ++++ c  C  + 
      CDO72139.1 406 IRAALIPLVCDLPALRKTAGFASySAHNFCSFCLLKK 442
                     9*******************85416677898886554 PP

>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.41   2.4e+03     238     260 ..     198     222 ..     195     248 .. 0.63
   2 !   15.8   0.0     1e-06    0.0062     219     320 ..     411     520 ..     379     523 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.41
     Plavaka 238 wCpkctakkkelgdl..eeselrtr 260
                  Cpkc+a++    +   ++++ r+r
  CDO72139.1 198 SCPKCHATYRPDSKRpkSPYPERCR 222
                 6888888765443321233444444 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1e-06
     Plavaka 219 aayiaDypEqvlvaci....vqgwCpkctakkkelgdl..eeselrtreetlelleeaade.....lkklwkeyglkgviepFwedlpradihelltpD 306
                  + ++D p     a+      ++ C+ c  kk+++++l  ++ ++r+r+++ e+ ++ +d       ++l++e+g++        +lp+ d+ ++   D
  CDO72139.1 411 IPLVCDLPALRKTAGFasysAHNFCSFCLLKKDQIDNLdrSTWPRRSRADHYECARKWRDAkteaeRERLFNEHGIRWSE---LLRLPYWDPTRFALVD 506
                 556666665555555433336799************97556678999999999988887645555556677777777544...5689************ PP

     Plavaka 307 lLHqlikgvfkdHl 320
                  +H l  g + +H+
  CDO72139.1 507 AMHNLFLGELRHHC 520
                 ******99999885 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-06    0.0085     106     212 ..     328     441 ..     305     458 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
     DUF1258 106 GvsikGnkkklWPvslilvdlPvaemqkstnillegivecsenPstalWna.llPlilsdles.ktGk.....vkkvkfkarivtltadqPakrslfGl 197
                 G + +G+++ +  v l+ ++lP  +  +  ni l g++ +  +P     n+ + Pl+   l   ++G       +    +a ++ l  d Pa r   G+
  CDO72139.1 328 GNKKAGKSHSIGGVYLVCLNLPPHLRYRPENIYLAGVIPGPTEPDVDQLNHyIRPLVDELLTIwHRGVylsdaTSAWLIRAALIPLVCDLPALRKTAGF 426
                 4455666777899999****************************998888725577744333224554111113445578889999************* PP

     DUF1258 198 rahqsekscffclst 212
                 ++ ++++ c fcl +
  CDO72139.1 427 ASYSAHNFCSFCLLK 441
                 ************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4781.66
//
Query:       CDO72140.1  [L=385]
Description: hypothetical protein BN946_scf184962.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.69   10.3   4.8        3.5    8.0   1.4    2.1  2  Fez1         Fez1
        7.4    6.8   7.6        1.1    9.5   2.3    2.2  2  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.4     0.001       9.4      58     153 ..      61     167 ..      41     171 .. 0.68
   2 ?    8.0   1.4   0.00039       3.5      51     115 ..     141     241 ..     127     299 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.001
        Fez1  58 eesleektlelevcenelqrk....kseaellrekvekleeelkelreelselsleeeeaa.......lesdeakaqrqeaeeleelkreverlraeLk 145
                  +++ +  +el+ c++ l r+    k     +++++ ++eee+ +lr++ +++++    a        l+  ++  +++++++++ l+++++ ++ eL+
  CDO72140.1  61 YAEAIHELEELNSCNAALYRAvldmKRGWRSVSDRMVHIEEEILQLRQDHEQSARPGILAYqqaqgayLHGVRKSFRHRSEDSMQGLTARLKAVELELN 159
                 444455667889999999998888788889999***************988866554443344445543333333344446777777777777777777 PP

        Fez1 146 eerqkkee 153
                   + ++++
  CDO72140.1 160 VLKSRCKQ 167
                 77766655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00039
        Fez1  51 eeeikeleesleektlelevcenelqrk..............kseaellrekvekleeelkelreelselsleeeeaa..................... 114
                 e++++ l ++l+  +lel+v++++ +++              ++ ae++ +++++le+e++   ++++el + +++ +                     
  CDO72140.1 141 EDSMQGLTARLKAVELELNVLKSRCKQEdannksvgevllsiQTWAENTTDRMRELEAEVSTATSAVNELRELDHNPSsffrmpfadpdedgsepvvgq 239
                 445555555555555555555555555534443444444333777777777777777777777766666544433333566666666666665555554 PP

        Fez1 115 .l 115
                  +
  CDO72140.1 240 sS 241
                 43 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3       0.2   1.7e+03      38      58 ..      92     112 ..      55     116 .. 0.60
   2 ?    9.5   2.3   0.00012       1.1       9      77 ..     139     211 ..     132     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.2
  TMF_TATA_bd  38 leaerdeareeivklmkenee 58 
                  ++     ++eei++l ++ e+
   CDO72140.1  92 VSDRMVHIEEEILQLRQDHEQ 112
                  333344445555555554444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
  TMF_TATA_bd   9 psvqlverlsseirrlEgElaslkeelerleaerdeareeivklm....keneelkelkkeleelekeleelq 77 
                   s   ++ l ++++  E El+ lk+++++  a+ +++ e ++++     +++++++el++e+++ ++ ++el+
   CDO72140.1 139 RSEDSMQGLTARLKAVELELNVLKSRCKQEDANNKSVGEVLLSIQtwaeNTTDRMRELEAEVSTATSAVNELR 211
                  566678899******************************9999983433455666777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2890.90
//
Query:       CDO72141.1  [L=241]
Description: hypothetical protein BN946_scf184962.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1724.01
//
Query:       CDO72142.1  [L=166]
Description: hypothetical protein BN946_scf184962.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1042.68
//
Query:       CDO72143.1  [L=181]
Description: hypothetical protein BN946_scf184962.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1349.10
//
Query:       CDO72144.1  [L=390]
Description: hypothetical protein BN946_scf184962.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.46   10.4   2.5        9.1    6.3   0.1    2.6  2  Flg_hook  Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4    0.0042        76      39      76 ..     151     188 ..     139     193 .. 0.86
   2 ?    6.3   0.1   0.00051       9.1      40      77 ..     316     353 ..     303     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0042
                 EEEEEE-SCHHHHHHHHTHHHHHHHHHCCTTCCEEEEE CS
    Flg_hook  39 svqltaenpetrelLeqnlprLreaLaaaGlklddlsv 76 
                    ++a+n  ++++L ++l++  ++ +a G  l++ls 
  CDO72144.1 151 AGVVRASNLTVKDALAASLGQFVSEAQATGRVLQRLSA 188
                 567899*******************9999999988775 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00051
                 EEEEE-SCHHHHHHHHTHHHHHHHHHCCTTCCEEEEEE CS
    Flg_hook  40 vqltaenpetrelLeqnlprLreaLaaaGlklddlsvs 77 
                 v  +a++ ++++  +++l +Lre+L++  +  +d+ v 
  CDO72144.1 316 VAYVAATTQALQVADADLTELRERLSDGSIAGADIPVE 353
                 667889999******************98888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3014.40
//
Query:       CDO72145.1  [L=373]
Description: hypothetical protein BN946_scf184962.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-05   25.1   0.1       0.17   12.2   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.8e-05   24.8   5.0      0.028   15.3   0.0    5.8  6  WD40         WD domain, G-beta repeat
     0.0054   16.6   0.0       0.16   11.8   0.0    2.6  3  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.057   13.9   2.0      0.069   13.6   0.2    2.0  2  DUF3681      Protein of unknown function (DUF3681)


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.099   4.4e+02      41      89 ..      19      66 ..       9      83 .. 0.75
   2 !    7.2   0.0    0.0013         6      15      77 ..     119     193 ..     112     200 .. 0.78
   3 !   12.2   0.0   3.8e-05      0.17      29      87 ..     230     288 ..     201     293 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.099
  ANAPC4_WD40 41 vrsLaWkpdgklLa.vaysdgevrlldaesgkvvhslsvksekavtclgW 89
                 v+++a++  g+ ++  ++ d    +  a ++k++++++ +s   v  ++W
   CDO72145.1 19 VSAVAFSYLGNYIVtAGVGDCMAYVWRAADQKLLSTVKSSSA--VLAIDW 66
                 667777777776651456777777888888888888877766..888888 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  15 edgellvfRln..gqrvwtl.......eedkedsevrsLaWkpdgk...lLavaysdgevrlldaesgkvvhsls 77 
                  + + ++  R n  +q+v +l        +++++  v+s++W ++++   lL v+y    v+l+d  +  vv++++
   CDO72145.1 119 KAEVVIWRRQNaiWQHVTDLrsppsssLNEDSELLVTSVHWTKSDRhpsLLLVSYMFHGVSLFDTADWSVVRNIP 193
                  45555556665446888888999998878889999******9988645589999999999999999988888775 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.8e-05
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  v +++++ e+ +   + + + g+ L  +   g+v+l ++++g+v +++s ++ ++v+ +
   CDO72145.1 230 VKSFTQPVEELRAVPVIFVHGGHALLGGSTTGTVHLWNVHNGRVHQKFSLGHRNSVMAI 288
                  444577777788888889999*****************************999988876 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.3e-06     0.028       8      37 ..      13      44 ..       6      45 .. 0.84
   2 ?   -2.9   0.0       3.6   1.6e+04      10      24 ..      58      66 ..      50      82 .. 0.56
   3 ?    0.6   0.0      0.27   1.2e+03      22      37 ..     111     125 ..      92     126 .. 0.76
   4 ?    0.2   0.1      0.37   1.7e+03      10      28 ..     134     156 ..     129     166 .. 0.63
   5 ?    3.1   0.1     0.043   1.9e+02      21      38 .]     250     267 ..     193     267 .. 0.73
   6 ?    0.4   0.0      0.32   1.4e+03       8      19 ..     278     293 ..     272     308 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.3e-06
                ESS.SSEEEEEEETTSSEEEEE..ETTSEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasG..sdDgtvriW 37
                +GH ++v+++afs  g++++++  + D+  ++W
  CDO72145.1 13 RGHvGGVSAVAFSYLGNYIVTAgvG-DCMAYVW 44
                7**999************9976255.******* PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.6
                SSSEEEEEEETTSSE CS
        WD40 10 Hssvtslafspdgaw 24
                 s v ++      +w
  CDO72145.1 58 SSAVLAI------DW 66
                4457788......44 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.27
                 SSEEEEEETTSEEEEE CS
        WD40  22 gawlasGsdDgtvriW 37 
                  ++lasG  +  v iW
  CDO72145.1 111 ASYLASGA-KAEVVIW 125
                 46799999.9999999 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.37
                 SSSEEEEEEETTSSE......EEEE CS
        WD40  10 Hssvtslafspdgaw......lasG 28 
                 H  vt+l+ +p++++      l+++
  CDO72145.1 134 H--VTDLRSPPSSSLnedselLVTS 156
                 4..8888877777665555545554 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.043
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                  g+ l+ Gs  gtv++W+
  CDO72145.1 250 GGHALLGGSTTGTVHLWN 267
                 333345678899999998 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.32
                 E.SS.SSEEEEE..EE CS
        WD40   8 t.GH.ssvtsla..fs 19 
                 + GH +sv +++  ++
  CDO72145.1 278 SlGHrNSVMAISanYN 293
                 349*999999965533 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.7e-05      0.16     105     161 ..      21      77 ..      17      80 .. 0.83
   2 ?   -1.4   0.0       0.4   1.8e+03      48      96 ..     140     190 ..     131     219 .. 0.64
   3 ?    1.2   0.0     0.063   2.8e+02      82     155 ..     260     296 ..     245     319 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E.EEE-TT.SSEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl.vewspd.gryvlTa 161
                 ++ fs+ g+++++aG g+      +w   + k +++++++ a+l ++w p+  + ++T 
  CDO72145.1  21 AVAFSYLGNYIVTAGVGDC--MAYVWRAADQKLLSTVKSSSAVLaIDWLPQrEDAFVTG 77 
                 689***************9..5567***************999648**99723466665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.4
                 T--EEECCEESSS.EEEEEE-TTSS-.EEEEESSSSCEEEEEECS.CEEEE CS
       eIF2A  48 kkksevvelkkegpihdvaWspkske.faviyGkmpakvslfdlk.vkvis 96 
                 + +s++++ + e  +  v+W ++ ++  +++  +m   vslfd+   +v+ 
  CDO72145.1 140 SPPSSSLNEDSELLVTSVHWTKSDRHpSLLLVSYMFHGVSLFDTAdWSVVR 190
                 555566666666678888887765541455566888888888874355554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.063
                 SCEEEEEEC.SCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTS CS
       eIF2A  82 pakvslfdl.kvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdg 155
                   +v+l+++ +++v  k++  +rN++                                      +a + +++p+ 
  CDO72145.1 260 TGTVHLWNVhNGRVHQKFSLGHRNSV--------------------------------------MAISANYNPAA 296
                 22333333312333333333333332......................................22222222222 PP

>> DUF3681  Protein of unknown function (DUF3681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         2   8.9e+03      51      69 ..      31      49 ..      17      61 .. 0.71
   2 ?   13.6   0.2   1.5e-05     0.069      59      91 ..     313     345 ..     293     350 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
     DUF3681 51 vvvfGlaeasvgfWvsgdp 69
                +v +G+ + ++ +W + d+
  CDO72145.1 31 IVTAGVGDCMAYVWRAADQ 49
                4556777777777777665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.5e-05
     DUF3681  59 asvgfWvsgdperrravGktvlwvsvlplvlva 91 
                 a v +Wv+++  rr+ v  t  +v ++pl+lv+
  CDO72145.1 313 APVVIWVARNIGRRHKVSATCHFVQIVPLLLVV 345
                 67899************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2625.90
//
Query:       CDO72146.1  [L=402]
Description: hypothetical protein BN946_scf184962.g89, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2738.12
//
Query:       CDO72147.1  [L=296]
Description: hypothetical protein BN946_scf184962.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-22   77.7   0.0    2.4e-20   72.9   0.0    2.1  1  Sad1_UNC  Sad1 / UNC-like C-terminal


Domain annotation for each model (and alignments):
>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   1.3e-24   2.4e-20       7     131 ..     141     292 ..     138     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1.3e-24
                 -GGGGGSS--STT-SEEEESS-EEEEEEEEEEEEEEEEEEE---GGGSG.-TTSB-EEEEEEESSTT---.......................-EEEEE CS
    Sad1_UNC   7 apkvilqedyspgeCwsfkgsrgfvvieLseeiiveavtlehveksvap.isSapKdfevsgskrypekk.......................wvllge 81 
                 +p+v+l+ed+ +g+Cw +++++++++i   +  ++++vt++hv++++++ i  ap++++++g+ ++p++                        + ll++
  CDO72147.1 141 PPDVVLNEDLRVGSCWLISDTHAQLAIVIPKLLYPTNVTIDHVPREITVdIGQAPRHMRLWGLLEDPTNRdlyyaivgtgnatsappisgrhvYALLAD 239
                 6899****************************************************************999********************999***** PP

                 EE-.-TTS-SEEEEE--TT---...-EEEEEEEE--BSS-SSEEEESEEEEEEE CS
    Sad1_UNC  82 fsy.dedgknaqtFeleeskdi...lvkyvkleilsnyGneeytclyrlrVyGt 131
                 fsy    ++++qtF+++++  +   ++ +v lei +n+G++  tclyr+r++G 
  CDO72147.1 240 FSYdIHAQSHIQTFQVDPRLVAsriYFGMVILEIIDNWGST-STCLYRVRIHGD 292
                 ***5577899********9544567****************.9**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2034.69
//
Query:       CDO72148.1  [L=261]
Description: hypothetical protein BN946_scf184962.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1835.47
//
Query:       CDO72149.1  [L=570]
Description: hypothetical protein BN946_scf184962.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   14.1   1.9       0.22   11.7   0.3    2.4  2  DUF3467   Protein of unknown function (DUF3467)


Domain annotation for each model (and alignments):
>> DUF3467  Protein of unknown function (DUF3467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   1.2e-05      0.22      38      87 ..     187     238 ..     137     283 .. 0.84
   2 ?    1.2   0.1     0.024   4.4e+02      28      47 ..     325     347 ..     276     370 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
     DUF3467  38 psEfiidFlqlvpgrp.earvksrvvl.spaaakqlvaaLqknldlyetrfG 87 
                 + E+++  lq+++g++ + r + +v++ s++  kql+++L+++l+++e++ +
  CDO72149.1 187 NAEVVLLLLQQMSGVQaSFREQAEVIKeSLETNKQLQELLAQHLKRFEHNVT 238
                 45788888998867776888888888857999****************9877 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.024
     DUF3467  28 Ysnga.ivmtspsEfiidF..lq 47 
                 Y ng  +v  +p+ f+idF  ++
  CDO72149.1 325 YKNGEgNVVCTPEKFRIDFehPW 347
                 6666425667999******5533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4005.27
//
Query:       CDO72150.1  [L=346]
Description: hypothetical protein BN946_scf184970.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00025   22.0   0.0    0.00051   21.0   0.0    1.6  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
      0.002   18.5   0.5     0.0052   17.1   0.2    1.8  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.7e-08   0.00051       1      96 []      35     134 ..      35     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.7e-08
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefna..ktgakytkkqlknrlkklrkeyklvkellersg...fsWDpttk.tvtAd 89 
                     +W+ e+ek +v  l ++v ++       +k  +++ +++ ++     +  +t + +kn++ ++++ y ++ +l+++ g   f+W +++   ++ +
      CDO72150.1  35 KWTLEDEKAFVGYLTDHVAERGD---GNYKMTTFNAAAAYLEGrrTADGPKTGTGCKNKWARIKETYMVCYKLKQNHGtsgFTWSEEKGaDIGIE 126
                     6****************887555...6788888888888888753556789999*******************986543349**98875246666 PP

  Myb_DNA-bind_3  90 de.vWkey 96 
                     de +W++y
      CDO72150.1 127 DEpIWEAY 134
                     44367776 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   5.7e-07    0.0052       2      77 ..      34     108 ..      33     119 .. 0.78
   2 ?   -2.0   0.0      0.53   4.8e+03      75      89 ..     143     157 ..     132     158 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.7e-07
                     SSS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC-...---HHHHHHHHHHHHHHHHCSSSSSS-- CS
  Myb_DNA-bind_4   2 dkWteeetklLieawgerilelrfqergkkrnkklWeevaeamaergy...krspeqCkeKienLkkrYkkekerekgs 77 
                      kWt e  k+++   +++ + + +++ g+ + + ++ + a+ ++ r     +++ + Ck+K+  +k +Y  + + +++ 
      CDO72150.1  34 AKWTLEDEKAFVGYLTDH-VAE-RGD-GNYKMT-TFNAAAAYLEGRRTadgPKTGTGCKNKWARIKETYMVCYKLKQNH 108
                     69***************5.444.466.899999.*********977553446*****************8776644343 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.53
                     S----S---TT-XXX CS
  Myb_DNA-bind_4  75 kgsgsswpffeelda 89 
                     + +++ wp ++ +d+
      CDO72150.1 143 QFKNKGWPLYDAVDR 157
                     345578999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.33s 00:00:00.94 Elapsed: 00:00:00.56
# Mc/sec: 1858.70
//
Query:       CDO72151.1  [L=278]
Description: hypothetical protein BN946_scf184970.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-18   64.8   0.0    8.7e-18   64.5   0.0    1.1  1  DDE_Tnp_4    DDE superfamily endonuclease
    1.4e-05   24.9   0.0    3.4e-05   23.6   0.0    1.6  1  DDE_Tnp_1    Transposase DDE domain
     0.0044   16.6   0.0     0.0077   15.9   0.0    1.4  1  Plant_tran   Plant transposon protein
  ------ inclusion threshold ------
      0.031   14.6   0.1       0.14   12.5   0.0    1.9  2  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   1.9e-21   8.7e-18       2     158 .]      46     205 ..      45     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.9e-21
   DDE_Tnp_4   2 Dgteipiqrpsnleeraqtysnykkkntlkvlivvdpng.kiifvskgypGsvsDkeilensgllkalkeavkpg.dvilaDkgFklsekllvpykk.. 96 
                 Dg++i +  p +   ++++  n+k+  + +v ++++ +   +++v  g +Gs++D++++++ +  +       pg  + laD+g+   + llvpy++  
  CDO72151.1  46 DGSHIVTAPPLD---ERSASRNRKGGISQNVFATCTLDTlLFTYVLSGIEGSATDSTVFQMARQADFRV----PGdRYYLADAGYGFVDVLLVPYRGvr 137
                 99*******998...888889************99988625778******************9999944....555*************99****99** PP

   DDE_Tnp_4  97 .......kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                        + + +  ++e+ fn ++a+ r  +Er++g lk+rf ilr   +++ ++   ++  ++c+LhN
  CDO72151.1 138 yhlaewgRAGLKPVNKEELFNLRHAKLRNAIERIFGILKKRFPILRAGCEYD-MKYQVRLPPALCALHN 205
                 *****888888888899***********************************.9999999999999999 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.6e-09   3.4e-05       7     193 ..      43     184 ..      38     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7.6e-09
   DDE_Tnp_1   7 livDattvrvpgtkedarwgykggkykygy..klhiavdtrsglilsvvi.t.pgnvhdskglkqlldelrpr..kgklvlaDaGYa.saelldtleek 98 
                  + D++++ +  +     ++++++ +k g+  ++ + + + +  +  +v+    g+  ds++++   +++++r   ++++laDaGY+    ll   +  
  CDO72151.1  43 GAADGSHIVTAPPL--DERSASRN-RKGGIsqNVFATCTLDTL-LFTYVLsGiEGSATDSTVFQM-ARQADFRvpGDRYYLADAGYGfVDVLLVPYR-- 134
                 57799999998888..33333433.356666588888888875.566666368**********99.899999999***********96644444444.. PP

   DDE_Tnp_1  99 gvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrl 193
                 gv y ++                   + ++   k+++k++ ++ +                           ++lR  iEr+F+ lk +f ++r 
  CDO72151.1 135 GVRYHLA-------------------EWGRAGLKPVNKEELFNLR--------------------------HAKLRNAIERIFGILKKRFPILRA 184
                 5555443...................5788888888888877776..........................9****************9988875 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06    0.0077     141     197 ..     152     207 ..     115     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
  Plant_tran 141 ekkklfaqkqeaarkdverafGvlqarfkivakparlwekedlakimkaciilhnmi 197
                 +k++lf  +    r  +er fG+l+ rf i+++ +  ++ +   ++  a   lhn i
  CDO72151.1 152 NKEELFNLRHAKLRNAIERIFGILKKRFPILRAGC-EYDMKYQVRLPPALCALHNFI 207
                 6899**************************96554.455555555555666667765 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05      0.14      19      65 ..     134     181 ..     119     184 .. 0.82
   2 ?   -0.7   0.0      0.41   1.9e+03      29      61 ..     236     268 ..     208     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
  DDE_Tnp_1_2  19 rgIrasipplgrpakn.kaapkkqarederarnvvErsfgwlkrrrsl 65 
                  rg+r + +  gr   +  +++  +  + ++ rn++Er fg lk+r+ +
   CDO72151.1 134 RGVRYHLAEWGRAGLKpVNKEELFNLRHAKLRNAIERIFGILKKRFPI 181
                  56666777777776666667788999999***************9966 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
  DDE_Tnp_1_2  29 grpaknkaapkkqarederarnvvErsfgwlkr 61 
                  + pa + ++ ++ +r+d++a  + E   gwl +
   CDO72151.1 236 EGPATRAERSRADSRRDYIAQTMWESYQGWLRQ 268
                  455555667788888999988888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1961.36
//
Query:       CDO72152.1  [L=101]
Description: hypothetical protein BN946_scf184970.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 744.92
//
Query:       CDO72153.1  [L=401]
Description: hypothetical protein BN946_scf184970.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.007   16.6   0.0      0.023   15.0   0.0    1.8  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-06     0.023      13     163 ..     113     274 ..     105     287 .. 0.69
   2 ?   -1.9   0.0      0.19   3.3e+03       9      21 ..     388     400 ..     385     401 .] 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-06
      TAXi_N  13 plklvvDtGsdltWvqCkpcka....cssqkkpvfdpsksstykavpcssslCk.......aceasssaksgsssstceyeisygadgssssGvlatdt 100
                 ++++ +DtGs+ tWv+     +    +   +++ +  s  +  ++v ++++          + ++ ++++ +s  +  +y  +        +  l++ +
  CDO72153.1 113 TFMMFIDTGSNTTWVKNASYLRllddQ---NHTCDAWSDDHLPRQVYSGKPPKPvsgremiQQSWVKKYDDKSAARIFQYPLTDD-TALPYKTILGHQV 207
                 5899***********995554475552...4444444444444444444444434445433446777777777777777777774.7778999****** PP

      TAXi_N 101 ltlsstdgksvkvp.nlvfGCgksnlgglaa.gadGilGLGrgklSlvsqlaskg..slgnkFsyCL 163
                 + l++++ +++++p +   + +   +  l +  +dGi+ LG ++    s+ +  +  s+  +F+y +
  CDO72153.1 208 INLDTKQRQHKDLPfHYQYALAVAVNDLLEEdPTDGIIALGLSNYQATSRNNPVRvpSFLDTFGYTI 274
                 ***999998888888888887775555555526********99998888888776778888888877 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.19
      TAXi_N   9 tppqplklvvDtG 21 
                  ppqpl + +DtG
  CDO72153.1 388 APPQPLRVCLDTG 400
                 59**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2937.76
//
Query:       CDO72154.1  [L=465]
Description: hypothetical protein BN946_scf184970.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3479.42
//
Query:       CDO72155.1  [L=541]
Description: hypothetical protein BN946_scf184970.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-24   84.1   0.0    1.1e-23   83.5   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    4.7e-05   23.3   2.2    9.5e-05   22.3   2.2    1.6  1  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
      0.012   15.4   3.2       0.02   14.7   3.2    1.3  1  zf-CCHC_2        Zinc knuckle
      0.031   14.0   0.0      0.096   12.4   0.0    1.8  1  DUF4219          Domain of unknown function (DUF4219)
       0.15   12.0   0.5       0.35   10.9   0.5    1.5  1  zf-CCHC_3        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0     3e-27   1.1e-23       1     135 [.     347     481 ..     347     484 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 3e-27
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w++k++ a+a I+l i+++++ ++ + + a+evW+ L  +++  +  ++++l++++ ++ +++++ +++ i++++ +++ L +++++i+de  +
       CDO72155.1 347 WREKNKLARAEIILNIEPAQYGHT-SGTYAYEVWEELRRIHQARGFGTRMALLRNFWRMAKRPDQPMTSWIADVRRAARTLDEIDAPIEDEHTI 439
                      99*********************9.899****************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyetfvtaies.seedltleevieklleeeerr 135
                      + l + LP+ y++++  ++s +e +l+le+vi++l++ee r 
       CDO72155.1 440 LVLTNGLPDAYSQVIVSLDStPEHELSLEHVIKRLVNEEARV 481
                      ***************************************985 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   2.2   2.7e-08   9.5e-05       2      18 .]     510     526 ..     509     526 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.7e-08
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C++C + GH+ rdCp+
  CDO72155.1 510 TCFKCTKKGHYQRDCPQ 526
                 8***************7 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.2   5.5e-06      0.02       6      21 .]     511     526 ..     510     526 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.5e-06
   zf-CCHC_2   6 ChiCgkkGHyIqdCPt 21 
                 C  C kkGHy +dCP+
  CDO72155.1 511 CFKCTKKGHYQRDCPQ 526
                 899************7 PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.7e-05     0.096       5      25 ..     305     325 ..     305     325 .. 0.98

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
     DUF4219   5 NYatWklrMklyLiaqdLWev 25 
                 NY++W + ++++L ++ LWe+
  CDO72155.1 305 NYTEWIIGIQALLTRKSLWEI 325
                 9******************97 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   9.8e-05      0.35       3      24 ..     507     528 ..     506     535 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.8e-05
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknag 24 
                 ++++C kC kkGH+   C++ +
  CDO72155.1 507 ERITCFKCTKKGHYQRDCPQLN 528
                 5799**********99999733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3885.89
//
Query:       CDO72156.1  [L=251]
Description: hypothetical protein BN946_scf184970.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-10   39.5   0.1    8.4e-09   35.2   0.0    2.1  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0057     1e+02       1      29 [.      52      80 ..      52      85 .. 0.82
   2 !   35.2   0.0   4.7e-13   8.4e-09      21     134 ..      86     202 ..      82     206 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0057
  Retrotran_gag_2  1 wkkkdakalalIvlsisdsllelvkeekt 29
                     wkkkd++a++lI    + + ++l++++++
       CDO72156.1 52 WKKKDDQAKGLIWMRTATNYHYLLETKEE 80
                     9***********98888888888776655 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 4.7e-13
  Retrotran_gag_2  21 lelvkeektakevWdkLkelyekksaankltlrkklfsl.kmkegesvadhinkleelvneLsalgvkiddedkvvllLasLPesyetfvtaie 113
                       +++  + +ak++Wd Lk+++   ++a  + l+  + +l  m+++  ++d + +  + + + s+ g  ++++ ++v +L++L +sy+t+ t + 
       CDO72156.1  86 KKRIAASYSAKDMWDVLKKEFGTPDTAEAIGLLMSFSNLpPMTDTRPLRDQLGTYITRIWDASNGGMHFTESHQAVFILMKLLPSYSTLSTSLT 179
                      57889999******************************945***************************************************** PP

  Retrotran_gag_2 114 s..seedltleevieklleeeer 134
                      s  + +d t+e ++ k+l ee+ 
       CDO72156.1 180 SshPLKDWTIEWIQGKVLAEESL 202
                      ********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1900.19
//
Query:       CDO72157.1  [L=215]
Description: hypothetical protein BN946_scf184970.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   24.4   2.2    3.1e-05   23.8   2.2    1.3  1  zf-CCHC    Zinc knuckle
     0.0039   17.0   3.2     0.0065   16.3   3.2    1.3  1  zf-CCHC_2  Zinc knuckle
  ------ inclusion threshold ------
       0.11   12.5   0.5       0.11   12.5   0.5    1.6  2  zf-CCHC_3  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   2.2   5.2e-09   3.1e-05       2      18 .]     184     200 ..     183     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.2e-09
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C++C + GH+ rdCp+
  CDO72157.1 184 TCFKCTKKGHYQRDCPQ 200
                 8***************7 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.2   1.1e-06    0.0065       6      21 .]     185     200 ..     184     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
   zf-CCHC_2   6 ChiCgkkGHyIqdCPt 21 
                 C  C kkGHy +dCP+
  CDO72157.1 185 CFKCTKKGHYQRDCPQ 200
                 899************7 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.1   6.3e+03       8      12 ..       2       6 ..       2       7 .. 0.85
   2 ?   12.5   0.5   1.8e-05      0.11       3      24 ..     181     202 ..     180     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
   zf-CCHC_3  8 QkClk 12
                Q+Cl+
  CDO72157.1  2 QRCLT 6 
                9**97 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.8e-05
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknag 24 
                 ++++C kC kkGH+   C++ +
  CDO72157.1 181 ERITCFKCTKKGHYQRDCPQLN 202
                 5799**********99999733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1734.36
//
Query:       CDO72158.1  [L=326]
Description: hypothetical protein BN946_scf184970.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2554.04
//
Query:       CDO72159.1  [L=634]
Description: hypothetical protein BN946_scf184970.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-09   36.0   0.0    1.4e-08   34.7   0.0    1.8  1  SAM_2     SAM domain (Sterile alpha motif)
    0.00012   22.4   0.0    0.00027   21.3   0.0    1.5  1  SAM_1     SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.096   13.0   0.8       0.17   12.1   0.1    1.7  2  DUF4508   Domain of unknown function (DUF4508)


Domain annotation for each model (and alignments):
>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.4e-12   1.4e-08       1      64 [.     554     614 ..     554     616 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.4e-12
                 GGGHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHH CS
       SAM_2   1 veswsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqe 64 
                 v+ + ledv  WLrs++l++yt+nF++ ++     +  ++e  L++ G+ ++g r+k+lk ++ 
  CDO72159.1 554 VDPKLLEDVPGWLRSLRLHKYTPNFEGMNWRD---MVVMDEAALEAKGVAALGARRKMLKTFEV 614
                 577889************************99...779**********************9986 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.5e-08   0.00027       6      58 ..     560     610 ..     558     615 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.5e-08
                 SSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHH CS
       SAM_1   6 edVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIly 58 
                 edV  WL+s++l++Y+ +F +g+ +++ +  ++e  Le+ gv  lG r+k+l+
  CDO72159.1 560 EDVPGWLRSLRLHKYTPNF-EGM-NWRDMVVMDEAALEAKGVAALGARRKMLK 610
                 799****************.666.9**************************96 PP

>> DUF4508  Domain of unknown function (DUF4508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.2   7.3e+03       7      17 ..      78      88 ..      74      95 .. 0.70
   2 ?   12.1   0.1   2.9e-05      0.17       2      52 ..     106     156 ..     105     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
     DUF4508  7 vlqWfkewsel 17
                + qWf+++ ++
  CDO72159.1 78 IDQWFETFQNY 88
                55788777655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.9e-05
     DUF4508   2 qelryvlqWfkewselqredFlevlveklvkkkvnglldsleslevqdkpl 52 
                 +el  + qWfk  se++r   l+ l+++ ++ +++  ++ l+++  +d  +
  CDO72159.1 106 EELSAIEQWFKVLSEAERTAALYSLLQHSTQVQIRFFITVLQQMARSDPMT 156
                 6888999*******************************9999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4246.13
//
Query:       CDO72160.1  [L=656]
Description: hypothetical protein BN946_scf184970.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-09   37.8   0.1    2.5e-05   24.7   0.0    2.5  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.4e-09   2.5e-05       1      80 [.     227     301 ..     227     312 .. 0.73
   2 !   10.8   0.2   2.6e-05      0.46     121     146 .]     311     336 ..     302     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.4e-09
         HET   1 YeaLSYvWgdsk..e.keeievngklleltenledalqvlrk.lgerylWiDaiCInQdddkekskqvqlmadIYsnAelviva 80 
                 Y+ +S+vW d    + ++ +++    ++++    +   ++r+ ++  + W D++CI  d +k +++ v+lm++ Y++A +v++ 
  CDO72160.1 227 YVSISHVWADGVgsNtEKGLPL----CQVK----RISGHARAlSEGGWFWMDSLCIPSD-EKMRTEAVRLMGKTYKEAGQVVAF 301
                 8999999966652232344443....4444....4445566633459**********99.99****************999875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 2.6e-05
         HET 121 llekeeraieellespwfkRvWvlQE 146
                   + +e+ i ++++s w++RvW+lQE
  CDO72160.1 311 RASPNEDFILRIATSGWMRRVWTLQE 336
                 5667889999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 4217.05
//
Query:       CDO72161.1  [L=380]
Description: hypothetical protein BN946_scf184970.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-32  111.3   0.0    6.6e-32  110.7   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    5.1e-15   55.8   0.0    2.1e-14   53.8   0.0    2.0  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   7.4e-36   6.6e-32       1     117 [.      52     177 ..      52     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 7.4e-36
      DIOX_N   1 iPvidlspl....sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg.kkldwkes 92 
                 iP+i+l+++    +d+++++a+a+++r+Ac +vGffyv+ hg+pe++i ++ +aa++FFalP+  K++l  +ks +f+Gy++l  e+ ++ +++d++e+
  CDO72161.1  52 IPIINLQAAqaahADHATKRALADEIRDACINVGFFYVKDHGIPEQVITNAVAAAKRFFALPQPAKDALdiHKSANFKGYTALLGENSNPaNRGDLHEG 150
                 9******99998666699***************************************************977788***********99999******** PP

      DIOX_N  93 fdlgtelpeddp..agkplegpnqwPe 117
                 fd+g+e p++++  ++  ++g n+wP+
  CDO72161.1 151 FDIGWEDPTGASraDDGAMTGENVWPD 177
                 ******998777778889********7 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.3e-18   2.1e-14       4      99 ..     225     333 ..     222     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.3e-18
                   EEEEEEE-S-...--------EEEEEESSS...........EEEEEEE-TT---EEEE.TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-- CS
  2OG-FeII_Oxy   4 llvlnyypph...pdpevilglgahtdasl...........ltillqddvgglevfkd.gkwlrvppvdnslivniGdallflsngryksvlHrVlp 85 
                   +++l yy p+    d+    g+gaht+              +til qd+v  l+v+++ gkw++  p +++l+vn Gd++  ++n  +ks+ Hr+  
    CDO72161.1 225 IMRLLYYAPQtgeVDDR-VEGIGAHTEIVSlrvpwmlitqcFTILWQDEVPALQVLNNdGKWIDAVPIPGTLVVNLGDQFARWTNDVFKSTVHRAV- 319
                   67788888885543333.56666666665545555555555**************955377**********************************9. PP

                   --GTGSEEEEEEEE CS
  2OG-FeII_Oxy  86 vnegerRvsiayfi 99 
                    + g +R+si +f+
    CDO72161.1 320 NRSGVERYSIPLFF 333
                   777778*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2627.05
//
Query:       CDO72162.1  [L=247]
Description: hypothetical protein BN946_scf184970.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-33  116.4   0.0    2.2e-33  115.4   0.0    1.5  1  adh_short     short chain dehydrogenase
    1.1e-23   84.1   0.0    5.1e-23   81.9   0.0    1.8  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      1e-06   28.8   0.3      2e-06   27.8   0.3    1.4  1  KR            KR domain
  ------ inclusion threshold ------
      0.086   13.4   0.6       0.18   12.4   0.6    1.5  1  Pyr_redox     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   4.8e-37   2.2e-33       2     184 ..      25     234 ..      24     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 4.8e-37
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S............. CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi............. 87 
                 v++vtG++ GIG+ iak+l  +Ga v++v+r+ e le++a e  ++  +++++q Dvt+re+++a+ +++++k+g +++LvnNAG+             
  CDO72162.1  25 VAVVTGGGTGIGLMIAKTLEHNGAVVYIVSRRLEVLEAAAREHSRH-GNLVPLQSDVTSRESMQAVADTIRQKHGFVNLLVNNAGMaksflpklpgpgq 122
                 89****************************************9996.79******************************************99999665 PP

                 .....S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH........HCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT CS
   adh_short  88 .....tgsgpfselseeewervievNltgvflltravlpaml........kqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptg 171
                       +    +    +e+ + ++vN+t++  ++ a+l+ ++         +   +I++vsS  g  k      ++Y+ sKaa ++l + la+ l++++
  CDO72162.1 123 admkkYQELLWNAGPPNEFSDAFDVNVTAAWYCAVAFLDLLDaankrgniPGVTSQIITVSSGGGfrKDDKVFSVPYTLSKAAATHLGKMLAHFLKDWN 221
                 3332211222222344567777*******************9954433333334468********54445667789*********************** PP

                 EEEEEEEESSBSS CS
   adh_short 172 irvnavaPGlvdT 184
                 ir n+vaPG++ +
  CDO72162.1 222 IRSNVVAPGIFPS 234
                 *********9866 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.1e-26   5.1e-23       4     175 ..      33     233 ..      28     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.1e-26
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG...........CSS-GG CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapk...........lkgpfl 88 
                    gIG  iAk+l  +Ga v ++ ++ e  +++++ ++++g+ v l+ DVt++e+++a+++++++k+g ++ lvnnag+a++             +++ 
    CDO72162.1  33 TGIGLMIAKTLEHNGAVVYIVSRRLEVLEAAAREHSRHGNLVpLQSDVTSRESMQAVADTIRQKHGFVNLLVNNAGMAKSflpklpgpgqaDMKKYQ 129
                   69***********************997777777777888889***********************************9999998877655334444 PP

                   GH.....-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..........CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEE CS
  adh_short_C2  89 et.....sreefdraldvnlyslfllakaalplmkeg..........gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNa 168
                   e+     + +ef +a+dvn+++++++a a+l l+ +           ++i+++ss g+ r  ++     y+ +Kaa  +l + lA+ l + +iR N+
    CDO72162.1 130 ELlwnagPPNEFSDAFDVNVTAAWYCAVAFLDLLDAAnkrgnipgvtSQIITVSSGGGFRKDDKVFsvPYTLSKAAATHLGKMLAHFLKDWNIRSNV 226
                   43222345699*********************55433344689988888*********99977766689**************************** PP

                   EEE--BH CS
  adh_short_C2 169 vspgpik 175
                   v+pg+  
    CDO72162.1 227 VAPGIFP 233
                   ****865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.3   4.6e-10     2e-06       4      93 ..      27     111 ..      24     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.6e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93 
                 ++tGG  g+Gl +a++l ++ga  + ++sR+ +     +a  +e +++g     ++ Dv+++++++a+ ++i+++++ ++  ++ Ag+++
  CDO72162.1  27 VVTGGGTGIGLMIAKTLEHNGAV-VYIVSRRLE---VLEAAAREHSRHGNL-VPLQSDVTSRESMQAVADTIRQKHGFVNLLVNNAGMAK 111
                 8****************999985.889999944...444455777777765.56778********************9999999999875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   3.9e-05      0.18       3      35 ..      27      60 ..      25      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
                EEECSSH.HHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  3 vvvGgGy.iglElAgalaelgkkVtvversdkll 35
                vv GgG+ igl+ A++l + g+ V++v r+ ++l
  CDO72162.1 27 VVTGGGTgIGLMIAKTLEHNGAVVYIVSRRLEVL 60
                66677755**********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1745.43
//
Query:       CDO72163.1  [L=338]
Description: Glycoside Hydrolase Family 16 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2211.34
//
Query:       CDO72164.1  [L=856]
Description: hypothetical protein BN946_scf184970.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-20   73.4   0.1    4.6e-20   72.3   0.1    1.6  1  Dynamin_N    Dynamin family
    1.3e-13   51.0   0.0    4.8e-13   49.2   0.0    2.1  1  MMR_HSR1     50S ribosome-binding GTPase
    1.5e-07   31.2   0.7    3.3e-06   26.8   0.7    2.6  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.7e-05   24.1   1.1       0.15   11.9   0.4    2.7  2  RsgA_GTPase  RsgA GTPase
     0.0012   18.5   0.6      0.023   14.3   0.6    2.4  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.004   16.3   0.0      0.007   15.5   0.0    1.3  1  IIGP         Interferon-inducible GTPase (IIGP)
     0.0053   17.0   0.0        2.3    8.4   0.0    3.4  3  Roc          Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
       0.04   13.7   0.0      0.098   12.4   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
      0.079   12.4   0.2        2.9    7.3   0.0    2.6  2  Arf          ADP-ribosylation factor family
       0.11   12.0   0.1        3.4    7.2   0.0    2.3  2  FeoB_N       Ferrous iron transport protein B
       0.14   12.2   0.0       0.35   10.9   0.0    1.6  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   2.8e-23   4.6e-20       1     165 [.     209     380 ..     209     382 .. 0.77

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2.8e-23
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C......CS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--SS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas......eravkeelkek....ekkledfsevreeieketekiagankgiskk 89 
                 ++v G+ ++GKS+++naLlg++i+p++++p+T +++e++  +e++ +      ++ v +++ ++    ++ l d++++  e e+ ++ ++  + +    
  CDO72164.1 209 VLVTGDLNAGKSTFVNALLGREIMPVDQQPCTTAFCEVHDATENDGKeelhilKEGVPYSVTDEstftRASLADLDAIVSENENDSQVLKVYLRDPR-- 305
                 78**************************************998886644445534444444444555566666666666666666666664333332.. PP

                 -EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEE CS
   Dynamin_N  90 villkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvl 165
                     + ls    +++l+D PGl++ n++    v+   ++ d++++v+sa++ ++ s ++fl ++  +k   +ivv+
  CDO72164.1 306 DPQASLLSNGIVDISLIDAPGLNRDNTHT-TRVFARQEEIDVVVFVVSAENHFTLSAKEFLMNASHEKAYLFIVVN 380
                 3366777888889***********88777.55566669*************************9999999999987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.9e-16   4.8e-13       1     114 []     208     381 ..     208     381 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.9e-16
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke................................................... 47 
                 +v++ G  N+GKSt++nal+g+    v ++p tT   + +  ++++ +                                                   
  CDO72164.1 208 KVLVTGDLNAGKSTFVNALLGReIMPVDQQPCTTAFCEVHDATENDGKeelhilkegvpysvtdestftrasladldaivsenendsqvlkvylrdprd 306
                 5899*****************9678************99999965533589999999999999************************************ PP

                 ............EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  48 ............ielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                             i l+D pG ++  +++   ++ f++ ee d++++vv+a+ ++++   +e+    +++k  l++v+nk
  CDO72164.1 307 pqasllsngivdISLIDAPG-LN--RDNTHTTRVFARQEEIDVVVFVVSAE-NHFTLSAKEFLMNASHEKAYLFIVVNK 381
                 ********************.65..34558999****99*********977.547666677766666688889999998 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.7     2e-09   3.3e-06       5     154 ..     208     423 ..     204     511 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2e-09
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST...HCHSHHHHHHTSCSSCEEEEEE.................................... CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv...lDtlkeErergiTiksaaisle.................................... 64 
                 ++ + g++++GK+T++ +Ll +  +  +++  +  +++    D ++++ +  + i  + + ++                                    
  CDO72164.1 208 KVLVTGDLNAGKSTFVNALLGREIMPVDQQPCT--TAFcevHDATENDGKEELHILKEGVPYSvtdestftrasladldaivsenendsqvlkvylrdp 304
                 688999999999999999995544333322222..2223334444444444444444433333334444444447777777777778888888889999 PP

                 .......TTCSSEEEEEEEESSSGG...GHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHHHH.HHHHHHH CS
    GTP_EFTU  65 .......ketkkylinliDtPGHvd...FskevirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl..kaelkeiv.eevkqkl 150
                         +     i+liD+PG       +  v +  + +D++v+vv+a++  +   +e l  a+ e+  +++++NK  ++  ka+++++v e++k +l
  CDO72164.1 305 rdpqaslLSNGIVDISLIDAPGLNRdntHTTRVFARQEEIDVVVFVVSAENHFTLSAKEFLMNASHEKAYLFIVVNKYEQIrdKAKCRRLVlEQIK-QL 402
                 99998654788899********65423366666677889******************************************885555554414444.44 PP

                 HHH.................H CS
    GTP_EFTU 151 srk.................e 154
                 s +                  
  CDO72164.1 403 SPRtyedaedlvhfvdsqqaL 423
                 333344444444444444440 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00043      0.69      88     125 ..     193     232 ..     174     243 .. 0.82
   2 !   11.9   0.4   9.3e-05      0.15      15      68 ..     343     394 ..     327     427 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00043
                  TTHHHHHHHCTT..SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  88 egleelkellkd..ktsvlvGqSGvGKStLinallpelel 125
                  ++l++l+++++d  + +++ G   +GKSt++nall+++ +
   CDO72164.1 193 NHLDKLRSRIEDksSKVLVTGDLNAGKSTFVNALLGREIM 232
                  67899999999952334667**************998655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9.3e-05
                  S--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHH CS
  RsgA_GTPase  15 NvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleel 68 
                   +d ++ vvs++ ++++l   + fL+ a ++++ + iv+nK + + ++ ++++l
   CDO72164.1 343 EIDVVVFVVSAE-NHFTL-SAKEFLMNASHEKAYLFIVVNKYEQIRDKAKCRRL 394
                  689999999999.66655.5789**********************999944433 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   1.4e-05     0.023      61     171 ..     265     404 ..     207     407 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                 ECCHCTT-HHHHHHHHHHHH..............................TT-SEEEEEECTTTTHHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHC CS
        cobW  61 iCctlredllkelealeere..............................erldviliEttGlaePapvafteeelksdltldavvavvDaknleaeee 129
                 ++ ++ ++ + + ++l+++                               +++d+ li + Gl   ++   t++ ++++ ++d+vv+vv+a+n     +
  CDO72164.1 265 VPYSVTDESTFTRASLADLDaivsenendsqvlkvylrdprdpqasllsnGIVDISLIDAPGLNRDNTH--TTRVFARQEEIDVVVFVVSAENHF-TLS 360
                 455555555444444444444455556666666666666688888888888999999999997766666..5889999*************9984.566 PP

                 CHHHHHHHHHHTSSE.EEEE-HHHHCHC...HHHHHHHHHHHHT CS
        cobW 130 kieekaedqlaaadl.lvlnKtDlldee.allekleerlrqlnp 171
                  +e +++   ++a l +v+nK++++ ++ +  + + e+++ql+p
  CDO72164.1 361 AKEFLMNASHEKAYLfIVVNKYEQIRDKaKCRRLVLEQIKQLSP 404
                 6666777777777652789********94444556777777776 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.3e-06     0.007      14      55 ..     185     226 ..     174     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.3e-06
                 HT-HHHHHHHHHHHHHHHHT--EEEEEEESTTSSHHHHHHHH CS
        IIGP  14 egnlqkvvsiikeaikeiesaklkiavtGdsGnGkssFinaL 55 
                 ++++ ++v  +++  + ie +  k+ vtGd  +Gks+F+naL
  CDO72164.1 185 DDRILNAVNHLDKLRSRIEDKSSKVLVTGDLNAGKSTFVNAL 226
                 66788899999999999************************9 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       2.3       1      38 [.     208     245 ..     208     261 .. 0.77
   2 ?    2.5   0.0     0.098   1.6e+02      63     119 ..     324     383 ..     308     384 .. 0.67
   3 ?    1.5   0.0       0.2   3.3e+02      54     116 ..     795     855 ..     775     856 .] 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdflt 38 
                 Kv++ Gd ++GK+++++ ++ +++ +  ++ +   f++
  CDO72164.1 208 KVLVTGDLNAGKSTFVNALLGREIMPVDQQPCTTAFCE 245
                 899*****************999988887777777655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.098
                 E-SGGCTTT.T-HHHHCTSCEEEEEEEGHHHHCHHHHHHHH..HHHCSSS-EEEEEE-TT CS
         Roc  63 taGqerfrs.lhplylreaalailvydsrssenlkeWlkel..kkvagkspvilvgnkiD 119
                   G +r ++ +++++ r++++ ++v+  + ++++    ke+  ++  +k+ +++v+nk++
  CDO72164.1 324 APGLNRDNThTTRVFARQEEIDVVVFVVSAENHFTLSAKEFlmNASHEKAYLFIVVNKYE 383
                 55555544438899****999999888665555555555550044455667889999986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.2
                 TCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHHHHHCSSS..-EEEEEE CS
         Roc  54 kkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlkelkkvagks..pvilvgn 116
                 k ++l+ WD+   erfr+ ++   re + a   + +++ +++ eW++e++++ag+    v+l+g+
  CDO72164.1 795 KVLRLASWDL--RERFRAAMEERGREVHGAEE-I-EKRAKRALEWFHEVERRAGEVreSVVLIGT 855
                 4566666776..56677666665555555521.1.334455669*******99964226788775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05     0.098      19      42 ..     202     226 ..     193     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
      AAA_29  19 idlkg.atlltGpsGsGKSTllDAi 42 
                 i+ k+  +l+tG+  +GKST++ A+
  CDO72164.1 202 IEDKSsKVLVTGDLNAGKSTFVNAL 226
                 44455579**************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0018       2.9      10      40 ..     200     232 ..     192     250 .. 0.78
   2 ?    2.1   0.1     0.072   1.2e+02      80     131 ..     342     388 ..     336     419 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0018
                 T...TTEEEEEEEESTTSSHHHHHHHHHHSSCE CS
         Arf  10 lk..kkelrilllGLDnaGKtTilkklkleelv 40 
                 ++  +k+ ++l+ G  naGK+T ++ l   e++
  CDO72164.1 200 SRieDKSSKVLVTGDLNAGKSTFVNALLGREIM 232
                 433389********************9988875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.072
                 TTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS CS
         Arf  80 ektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpeal 131
                 e++d+v+fvv + ++  l  + +   ++l +   +++ l ++ NK +   + 
  CDO72164.1 342 EEIDVVVFVVSAENHFTL--SAK---EFLMNASHEKAYLFIVVNKYEQIRDK 388
                 578999999977665444..444...45667778899999999*98765544 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0021       3.4       2      24 ..     208     230 ..     207     274 .. 0.86
   2 ?    2.3   0.0     0.066   1.1e+02      49      91 ..     319     356 ..     308     396 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0021
                 EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak 24 
                 +v + G+ n+Gk+t++nal g +
  CDO72164.1 208 KVLVTGDLNAGKSTFVNALLGRE 230
                 68899**************9975 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.066
                 EEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGH CS
      FeoB_N  49 veivDlPGiYslsayseeekvardflleeepdvvvnvvdatnl 91 
                 ++++D PG         + + +r f  +ee+dvvv vv a+n 
  CDO72164.1 319 ISLIDAPGLNR-----DNTHTTRVFARQEEIDVVVFVVSAENH 356
                 56666666432.....33455677777999********99873 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.35       9      40 ..     197     227 ..     186     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                 HHHHHHHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE   9 algkklakalgdvilLeGdLGaGKTtlvrgla 40 
                 +l +++ +  ++ +l +GdL aGK+t+v +l+
  CDO72164.1 197 KLRSRIED-KSSKVLVTGDLNAGKSTFVNALL 227
                 44444443.245699*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 5844.79
//
Query:       CDO72165.1  [L=588]
Description: hypothetical protein BN946_scf184970.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-27   93.0   0.0    1.5e-26   92.4   0.0    1.3  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    3.2e-11   43.6   0.3    6.8e-11   42.5   0.3    1.6  1  Lactamase_B     Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.028   13.9   0.0    1.4  1  Lactamase_B_2   Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   2.5e-30   1.5e-26       1      94 []     477     585 ..     477     585 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 2.5e-30
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGis........kssfdgrGnvsfGikeqii..fpeieydkd..kgifGmditivttak...td 80 
                     p+Gvkv+L+g++my+fl+ l+e+vlpr+rdF+G+         ++ ++++G+vsfG+++ +   fp+ie++ d   ++fGm+i+++t+ak   ++
      CDO72165.1 477 PVGVKVDLKGQQMYDFLSVLVEFVLPRVRDFHGVLmegpsnrlDKMSSASGVVSFGLPPTALglFPQIEVNLDayPQTFGMHIHFITNAKgvgAQ 571
                     79********************************999**9999999999************************99889***************9* PP

  Ribosomal_L5_C  81 eearallkelgipf 94 
                     ++arall++++ipf
      CDO72165.1 572 NRARALLSGFQIPF 585
                     *************9 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   1.1e-14   6.8e-11      17      86 ..      65     154 ..      51     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.1e-14
                  EEEES--SCHHHHHHHH....................HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHH CS
  Lactamase_B  17 viLiDtGtsteaaraal....................elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmee 86 
                  ++++D G+  + + +                       l++ g++pkdv++vil+HlH+DHiGg++ +v+at v  g  ++ +++  +  
   CDO72165.1  65 HLVFDLGLRRDPSTFPPivqgvvekympytvpqtvdeSLKKGGIEPKDVKTVILSHLHWDHIGGAEPFVNATFVLGGGARALLENAYPAN 154
                  556666666666666556666666666666666666679999******************************998777766655554444 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.8e-06     0.028      27      49 ..     109     131 ..      94     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.8e-06
                    -..SEEEEE-SS--HHHHGGGGC CS
  Lactamase_B_2  27 elppidaVllthaHyDHlagllt 49 
                    e+++++ V+l+h H+DH+ g+  
     CDO72165.1 109 EPKDVKTVILSHLHWDHIGGAEP 131
                    6789**************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4593.56
//
Query:       CDO72166.1  [L=636]
Description: hypothetical protein BN946_scf184970.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-22   78.3   0.0    1.4e-09   37.9   0.0    2.6  2  Peptidase_M64  IgA Peptidase M64


Domain annotation for each model (and alignments):
>> Peptidase_M64  IgA Peptidase M64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.3e-13   2.3e-09       3      65 ..     140     202 ..     139     208 .. 0.96
   2 !   37.9   0.0     8e-14   1.4e-09      64     256 ..     220     522 ..     213     525 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.3e-13
                    EEE-S-TTTSEEEEEEEES--GGGHHHHHHHHHHHHHHHTTSTTTTTTGGGEEEEEE----SS CS
  Peptidase_M64   3 llesgakkdkldvlilgdGYtaaerekfekdArklvealfsaepfkeykadfnvwavkapsee 65 
                    l  sg++++++d+  ++dGYt+ e++kf +dA +l+e +  ++ f   k  +n+wa ++ps+e
     CDO72166.1 140 LITSGDSNNRVDLVFFADGYTEYEKDKFIEDALRLAEDISGNQTFYTVKPLLNFWAAFTPSKE 202
                    567999*******************************************************97 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 8e-14
                    SSSS-BBGGGTB----TT--BSSBTTBTTB-B---HHHHHHHHT..TS--SEEEEEES-SS--EEEETTTEEEEESSSTTHHHHHHHHHHHHTT-- CS
  Peptidase_M64  64 eesGvsrpltgverrsalgstydafdseRyllvvenrakrdaas..fapydlvivlvNtekYgGgGifnlyatvaadnsyatyilvHElgHslagL 157
                    ++sG+  ++ g  +++++g++ d  ++ R +  +++++ r a        d++i+++N+  YgG G  + +++++   ++   +l HElgHs+   
     CDO72166.1 220 AQSGI--GSGGKPKETPFGLYRDGTEL-RAVYYSKPEVARAACFslGDQCDFPILMGNDPLYGGLG--GEFTVITPSFANGALVLRHELGHSVIDV 310
                    56788..67788889999987776664.4444444444444433238899*************988..6688999999999*************** PP

                    ----EES-----TSS-TTS--SSTT-B-SSSGGG.TTGGGS-TT--SS--GGGT.......................................... CS
  Peptidase_M64 158 adEYeytsdvayesaeerkEpwepNvtaltdpakaKWkdllkettplPtpwskke......................................... 212
                     +EY  ++  ay        ++ +N t         W+++l++     t  ++++                                         
     CDO72166.1 311 GEEY--DGGFAYFGV-----NAAHNRTL----TDVPWAHWLTNASA-HTHGHDHAeplarversvmpmqaypwtllntstpwsttfnssgtyawhl 394
                    ****..444444442.....34444444....56678888888776.56666665788888888888889999999999***************** PP

                    ....................................................................................TT-SS--EEEET CS
  Peptidase_M64 213 ...................................................................................keagkvGafeGaa 225
                                                                                                       +++g++ ++    
     CDO72166.1 395 vrfslsglpeqddlrveldgkdlgwvprkdigvdrwhydiklnrtlkggehkvqfvlknktregeaqlcsvevlefgdesefvSTPGHYSLYPTFS 490
                    ************************************************************************************************ PP

                    EEEEEEEESS.S--TTT-SSS-S--HHHHHHH CS
  Peptidase_M64 226 yeakgvyrpq.ldcimktrdaakfcavcrrai 256
                     +++ +yrp+ +dc m+   + +fc+ c +++
     CDO72166.1 491 DKNETSYRPTnEDCLMRIVTTPNFCKACTEGL 522
                    *********7479***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.53
# Mc/sec: 3630.83
//
Query:       CDO72167.1  [L=1921]
Description: hypothetical protein BN946_scf184970.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-72  241.8   0.0    1.2e-71  241.2   0.0    1.3  1  Pkinase         Protein kinase domain
    6.4e-50  169.8   0.0    1.5e-49  168.7   0.0    1.6  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00063   19.1   1.7      0.092   12.0   0.2    2.8  2  DUF4704         Domain of unknown function (DUF4704)
     0.0019   17.1   0.0     0.0019   17.1   0.0    1.9  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.013   14.8   0.1       0.28   10.4   0.0    2.6  3  Kinase-like     Kinase-like
          2    7.3  14.9       0.16   10.9   0.5    3.0  3  RICTOR_N        Rapamycin-insensitive companion of mTOR, N-te


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2   0.0   4.1e-75   1.2e-71       1     264 []      17     269 ..      17     269 .. 0.97

  Alignments for each domain:
  == domain 1  score: 241.2 bits;  conditional E-value: 4.1e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+    lG+G+fG+Vy+a++ +tg++vA+K+i+ +++ k++  ++++Ei +lk+l+hpniv+++++ ++ ++ly++le++e+g+l+++ ++ g+++e+ 
  CDO72167.1  17 YQLGDSLGKGAFGQVYRALNWATGETVAIKEIQLSNIPKSEIGQIMSEIDLLKNLNHPNIVKYKGFEKTREYLYIILEFCENGSLHNICKKFGKFPETL 115
                 677889********************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 +  +++q+legl ylH++g+iHrD+K +NiL +++g +K++DFG+a+    +    + +vg+++++APEv+++++ ++++D+Ws+G++++ell gkpp+
  CDO72167.1 116 VGVYIAQVLEGLVYLHDQGVIHRDIKGANILTNKDGCVKLADFGVASSTAAGAVrDDAVVGSPYWMAPEVIEQSGATTASDIWSVGCTVIELLEGKPPY 214
                 ***********************************************999988758899**************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +           ld + ++++i++  + + p ++  s+ +kd+l  +++kd + R++a++ll+hp++
  CDO72167.1 215 H----------FLDPMPALFRIVN--DDSPPIPEGASPIVKDFLYHCFQKDCNLRVSAKKLLRHPWM 269
                 *..........8999999999985..589999999*******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   0.0   4.9e-53   1.5e-49       2     257 ..      18     265 ..      17     266 .. 0.94
   2 ?   -4.0   0.3       2.4   7.2e+03      62     118 ..     867     921 ..     842     925 .. 0.56

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 4.9e-53
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlk.eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  +lg++lG+GafG+V+++        + ++Va+K ++ ++  ++e  ++++e++++k+l+hpnivk+ g+   +e l+i++e++++G+L++  +k    
   CDO72167.1  18 QLGDSLGKGAFGQVYRALNW----ATGETVAIKEIQlSNIPKSEIGQIMSEIDLLKNLNHPNIVKYKGFEKTREYLYIILEFCENGSLHNICKKF--G 109
                  57899************887....7999******9636778889***********************************************9997..8 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllw 196
                  k+  + +  +++qv +G+ yL+++ ++Hrd+   N+L +++ +vk++DfG+a+++      v+++    +  WmapE+++++  t++sD+Ws G +++
   CDO72167.1 110 KFPETLVGVYIAQVLEGLVYLHDQGVIHRDIKGANILTNKDGCVKLADFGVASST--AAGAVRDDAVVGSPYWMAPEVIEQSGATTASDIWSVGCTVI 205
                  88888888999******************************************99..667778888888999************************** PP

                  HHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 197 EiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  E+++ g+ py+ l+++ +l ++ ++   + pe +++ +++++ +c+++d + R + ++l++
   CDO72167.1 206 ELLE-GKPPYHFLDPMPALFRIVNDDSPPIPEGASPIVKDFLYHCFQKDCNLRVSAKKLLR 265
                  ***9.*************************************************9999865 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.4
                  TB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  62 nivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmey 118
                  ++ + lg     ++ll   e+++  +L ++L++   ++l+++  l  +lq A+++e 
   CDO72167.1 867 HVRNALGTRKVVRRLLRACELLQPEHLVQMLKAV--KHLSMNANLLEVLQNANAIEI 921
                  4445555555555555566666666666666665..666666666666666666655 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   3.1e-05     0.092      59     112 ..     668     717 ..     643     723 .. 0.87
   2 !    5.3   0.1    0.0032       9.6      64     117 ..     755     811 ..     739     836 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
     DUF4704  59 atllsliaelleasstnqqqlvqtkGflvlaflLqkvspkhLtrevleallsla 112
                  +ll++    +++ +++q+qlv+ +G+l + ++L++ +++ +t+++l+++  l+
  CDO72167.1 668 DQLLNI----IHDTPEMQSQLVSAHGMLAILEVLESRTSRDVTLKLLQIINALV 717
                 455555....5889************************************9987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0032
     DUF4704  64 liaelleasstnqqqlvqtkGflvlaflLqkvspk..hLtrevleallslakvlk.e 117
                 +i  l+++s  + q +++++G+ vl  lL++   +  +L  + l+ + s+++ ++ +
  CDO72167.1 755 FIRLLCHSSVLTLQMFISCRGLKVLVDLLDEDYTEqsELVVHALNGICSVFELQSpT 811
                 66667788888889999************8754442366667777777766666633 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.3e-07    0.0019     312     396 ..     120     196 ..     106     200 .. 0.83
   2 ?   -6.6   4.8         6   1.8e+04     260     279 ..    1676    1695 ..    1610    1733 .. 0.50

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.3e-07
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                     ++++++g+  L+ ++g++HrDi   Nil +     ++ +  L+D+ +a++++    +  +   +G +++ma ev++++  +   D
      CDO72167.1 120 IAQVLEGLVYLH-DQGVIHRDIKGANILTN-----KDGCVKLADFGVASSTAA--GAVRDDAVVGSPYWMAPEVIEQSGATTASD 196
                     568899999***.***************99.....899*************96..44455689***********99766665555 PP

  == domain 2  score: -6.6 bits;  conditional E-value: 6
  Pkinase_fungal  260 esskkvekrsvdssvstskr 279 
                      +++++++++   +++st kr
      CDO72167.1 1676 KGQSPTSTNAQAQQTSTVKR 1695
                      11111111111111111111 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.56   1.7e+03      17      61 ..      20      63 ..      12      95 .. 0.68
   2 ?   10.4   0.0   9.4e-05      0.28     152     191 ..     122     161 ..     104     208 .. 0.72
   3 ?    0.5   0.1     0.098   2.9e+02      78     136 ..     876     931 ..     866     955 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.56
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlke 61
                 g+ l+kg ++ v+++ + +tge +a+k   l + + k+++ ++  
   CDO72167.1 20 GDSLGKGAFGQVYRALNWATGETVAIKEIQLSNIP-KSEIGQIMS 63
                 67799999******************998876654.555555444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.4e-05
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaL 191
                  q++    +L+++g++h +++  n+l +++g ++l +f+  
   CDO72167.1 122 QVLEGLVYLHDQGVIHRDIKGANILTNKDGCVKLADFGVA 161
                  55555679*****************************854 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.098
  Kinase-like  78 kdhlrlllpfdlvkiqkkkpfiqlkskesiywvvnallllpaasvdleilnkvlqkrse 136
                  k+++rll + +l + ++  ++ ++ ++ s+   +n+l++l++a+  +eil+k+l+++s+
   CDO72167.1 876 KVVRRLLRACELLQPEHLVQMLKAVKHLSMN--ANLLEVLQNANA-IEILVKILDEQSS 931
                  6788999999999999999999999999888..9*******9975.9*******99887 PP

>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.34     1e+03     125     186 ..     644     708 ..     634     721 .. 0.63
   2 ?   10.9   0.5   5.4e-05      0.16     129     199 ..     756     831 ..     752     859 .. 0.75
   3 ?    3.4   3.6      0.01        31      17     272 ..     868    1120 ..     853    1128 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.34
    RICTOR_N 125 rricletLaElllldpelvveagGlrvllnalldgsselaesllv.....allylLdspetrkylrk 186
                 ++   +++ El+   p+  ++  + + lln++ d ++e+++ l++     a+l++L+s ++r +  k
  CDO72167.1 644 CNTVTQLIDELTPSAPDFQLRD-ACDQLLNIIHD-TPEMQSQLVSahgmlAILEVLESRTSRDVTLK 708
                 5555566666666666666654.56677888884.55566665555666688888888888875444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.4e-05
    RICTOR_N 129 letLaElllldpelvveagGlrvllnalldgsselaesllv.....allylLdspetrkylrkgldleillspftd 199
                 + +L+  ++l  ++++++ Gl+vl+++l + + e +e ++      + +  L+sp+t++ +   +  e ll p+++
  CDO72167.1 756 IRLLCHSSVLTLQMFISCRGLKVLVDLLDEDYTEQSELVVHalngiCSVFELQSPTTKNDFCRMFIREGLLDPLSS 831
                 7899************************************955555556777888887766666666666666665 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.01
    RICTOR_N   17 lkydlsleellkriqfmLldeskevraagyRilRylisdseslklllklkldiliirSLekdsk..sevEReq.ALkLirafleikkgake..lsks 108 
                  ++++l +++++ r+  +    + e     ++++++l ++ + l++l++ +   ++++ L+ +s+  + +E+    +     ++ ++k+++e   + +
  CDO72167.1  868 VRNALGTRKVVRRLLRACELLQPEHLVQMLKAVKHLSMNANLLEVLQNANAIEILVKILDEQSSgpYGTEMSNhIFQTCYNLCRLNKSRQEeaAQAG 964 
                  5555555555555554444444444455678888888888888888888888888888888777445556643144555666666666666889*** PP

    RICTOR_N  109 vvralvavaehedDrlrricletLaElllldpe...lvveagGlrvllnalldgsselaesllvallylLdspetrk..ylrkgldleillspftds 200 
                  ++ +l  v+e++  +l++ +l +L++l+    +   l+ + +Gl++ l++l d ++++++  l a+l++L+ ++ r    l k   l+ ll  f + 
  CDO72167.1  965 IIPSLKRVIESSS-PLKQFALPILCDLASAGKScriLLWQHDGLSMYLRLLEDPYFQVSS--LEAILSWLQDETARIedELIKPDALDALLRCFVS- 1057
                  **********665.*************98654422278899***********99999987..6889****99998852234444478888888888. PP

    RICTOR_N  201 lekekkkesneeklqnsakaisslLksWsGlialsmnnfrplksLvsaLripslevrkaildllfdllrikp 272 
                          ++++ ++n    ++++L+  +  i++ + +++ +k L++ L  ++  vr  +l +l  ++++ p
  CDO72167.1 1058 --------AKANSFENLLDPFLKILRIST-SITIGIAKSQFFKRLIDKLGSSKAVVRLNLLRILRTVCDVHP 1120
                  ........233335666666666666544.445555666777777777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.28u 0.31s 00:00:01.59 Elapsed: 00:00:00.47
# Mc/sec: 12234.89
//
Query:       CDO72168.1  [L=672]
Description: hypothetical protein BN946_scf184970.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-58  197.6   0.4    5.1e-58  196.2   0.4    1.7  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
       0.17   11.8   0.0       0.34   10.8   0.0    1.4  1  DUF3361       Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.2   0.4   5.7e-62   5.1e-58       8     203 ..      29     235 ..      23     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 196.2 bits;  conditional E-value: 5.7e-62
                   SS--E...........EEEEEEESSS-TTSGGG--EEEEE-STSTSSC..S-EEEEE-HHHHH...HHHHTT....-SEEETCHHHHHHT-HHHHHH CS
  Ribosomal_L1   8 kfdes...........veialnlttkkpkkadqrkpgkipLphplgke..vkiclitkdpqaeyakeakeag..riakviglkklkkkyksfeakrk 89 
                   kf+e+           ++++l ++tk ++ +++ kp +ip++ p+ ++  + icli+kdpq+ey++ ++e+g   i++v+++k+lk k k+fea+r 
    CDO72168.1  29 KFEEQkaenqllggkeQNVWLVVNTKLMHPEKKIKPARIPVKYPIVDPrtSPICLIVKDPQREYKDLIAEKGikFISRVVDIKHLKGKWKPFEARRM 125
                   3443334446888888*******88887777777**********88776788********************************************* PP

                   TCCH-SEEEEEGGGHHHHHHHCHHHHGGGT-S-ECC...CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L1  90 llkefdlfladdrimpllpklLGkvfgkrkkmPipv.ltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvek 185
                   llke  lflad+r++pllp lLGk+f+++kk+Pipv +t+    +d+k e+e+a++st++++ ++gtc+s+k+G++s+++++++eN+++++ ++v++
    CDO72168.1 126 LLKENGLFLADERVVPLLPGLLGKKFFEAKKQPIPVcMTR----KDLKGELERAISSTYFHQ-NQGTCTSIKIGNISQKPSQVLENLQTALPEVVKH 217
                   ************************************7776....79************9999.********************************** PP

                   STTTSGSEEEEEEEETTS CS
  Ribosomal_L1 186 vpkkwkniksiylkttms 203
                   ++++w+ni+s+++kt++s
    CDO72168.1 218 IKGGWDNIQSFFIKTNSS 235
                   ***************998 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.8e-05      0.34       6      59 ..     181     234 ..     178     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.8e-05
     DUF3361   6 FisrdGlkllvkiveegkesgeilayaLtafleLmdhgivsWdtlsdeFikkia 59 
                 F +++G  + +ki + +++  ++l+++ ta+ e+++h   +Wd++++ Fik+  
  CDO72168.1 181 FHQNQGTCTSIKIGNISQKPSQVLENLQTALPEVVKHIKGGWDNIQSFFIKTNS 234
                 667788888888888888899*****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1443  (0.0804841); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.44u 0.39s 00:00:01.83 Elapsed: 00:00:00.57
# Mc/sec: 3548.52
//
Query:       CDO72169.1  [L=335]
Description: hypothetical protein BN946_scf184970.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-31  107.9   0.1    5.2e-31  107.3   0.1    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.5e-20   73.1   0.0      1e-19   71.9   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    4.3e-13   49.1   0.3    8.5e-11   41.7   0.0    2.9  3  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.1   8.7e-35   5.2e-31       1     125 [.     152     281 ..     152     286 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 8.7e-35
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHT..TESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakkl..GadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee 96 
                 gvG+aa+qlA+ +Ga +v+a++s+++kl+++ +l  Ga++v+nyk+ d+ e++k++t+g+gvdv++++vG ++ ++  +++l+++Gr+++ ++++g e+
  CDO72169.1 152 GVGIAAIQLARLYGAnTVTATASTKDKLDMLLSLpgGATHVVNYKTQDFAEEVKKITDGKGVDVIIDFVG-QSHWQKNIDSLAYDGRMTLLAVLSGAEV 249
                 9**************99999*************9988*******555***********************.**********************777776 PP

                 ..EEHHHHHHTT-EEEEE-SSCHHHHHHH.HH CS
  ADH_zinc_N  97 ..fdlrnlllkeksilGsllgslreefke.al 125
                   f+l ++l+k+++i+Gs+l   +e++++ ++
  CDO72169.1 250 snFSLLPILYKRLRIQGSTLRARSEDYQAeLV 281
                 69********************9999997555 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.7e-23     1e-19       2     131 ..     188     330 ..     187     331 .. 0.78

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.7e-23
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEE..EE----............S-EEE-CHHHCTTT-EEEE--GGG. CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrl..vsiggpp...........lsaallkpakkrkgrsvkyeflfsm 81 
                   GA++v++y+t+df+    + t+g+gvDv++d vg+ ++ ++ ++ l+  Gr+  + +++             l ++l+ + +  + rs +y+  + +
    CDO72169.1 188 GATHVVNYKTQDFAeevkKITDGKGVDVIIDFVGQSHW-QKNIDSLAYDGRMtlLAVLS-GaevsnfsllpiLYKRLRIQGSTLRARSEDYQAEL-V 281
                   9*****************9*****************99.78888886669985433332.13456666666644444444444444555555555.4 PP

                   ..-.-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEE CS
  ADH_zinc_N_2  82 kasaqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKi 131
                    ++ +++++e+++     G++r+ + +v+p++e+++Ahr +e+++  GKi
    CDO72169.1 282 ARF-KREAFEHITGSSGNGRIRTYIHKVYPWTEIQDAHREMEANKNSGKI 330
                   555.7777*****************************************9 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.4e-14   8.5e-11       1      60 [.      28      87 ..      28      92 .. 0.96
   2 !    6.2   0.0    0.0015       8.9      86     108 ..      86     108 ..      85     109 .. 0.90
   3 ?   -1.7   0.1      0.45   2.7e+03      52      64 ..     137     149 ..     134     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.4e-14
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60
                pg+vl+kvka g+++ D+   +g+  l+  +p ilG E++G v+evg++v+ +k Gd+V+
  CDO72169.1 28 PGKVLVKVKAFGLNRMDILQREGKYPLPPGAPDILGVEFSGHVVEVGDGVTAWKEGDEVL 87
                589********************99*********************************97 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0015
                 ETTTSS-SSSBSEEEECGGGEEE CS
       ADH_N  86 llgvsldGgfaeyvvvpekklvk 108
                 +lg+   G++aey+v+p+++l+k
  CDO72169.1  86 VLGLASGGAYAEYIVAPDRNLIK 108
                 6889999************9987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.45
                 S--TT-EEEE-SE CS
       ADH_N  52 klkvGdrVvvepl 64 
                 ++k+Gd+V+v++ 
  CDO72169.1 137 EVKKGDNVLVHAG 149
                 68999*9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2108.53
//
Query:       CDO72170.1  [L=411]
Description: hypothetical protein BN946_scf184970.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00034   20.9   8.1        3.6    8.1   0.1    6.0  6  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
          1    9.6   0.0          1    9.6   0.0    3.8  6  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0066        60       2      14 ..      38      50 ..      29      59 .. 0.61
   2 ?   -0.1   0.0      0.16   1.4e+03      24      37 ..      90     102 ..      81     109 .. 0.64
   3 ?    2.4   0.1     0.025   2.2e+02      21      41 ..     156     173 ..     148     175 .. 0.75
   4 ?    0.1   0.0      0.13   1.2e+03      22      39 ..     213     229 ..     202     233 .. 0.68
   5 !    4.1   0.1    0.0077        69      20      33 ..     233     252 ..     214     261 .. 0.64
   6 !    8.1   0.1    0.0004       3.6       1      35 [.     296     336 ..     296     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0066
                S--EEE--SS--- CS
       LRR_4  2 nLevLdLsnNqlt 14
                +L++L  s+N + 
  CDO72170.1 38 KLRTLEVSHNLIE 50
                4555555555544 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
                 T--EEE-.-S---- CS
       LRR_4  24 nLkeLdLsgNnlit 37 
                 +L++L+L + +l +
  CDO72170.1  90 SLQTLHL-ETSLQD 102
                 5777777.443334 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.025
                 H-TT--EEE-.-S-----GGG CS
       LRR_4  21 klpnLkeLdLsgNnlitdlde 41 
                 +l +L++L++ ++  + dl++
  CDO72170.1 156 NLSSLRHLTI-DC-EL-DLPP 173
                 699******9.88.55.5555 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.13
                 -TT--EEE-.-S-----G CS
       LRR_4  22 lpnLkeLdLsgNnlitdl 39 
                 + +L++L+L    +  dl
  CDO72170.1 213 FASLRTLTL-TDIQWVDL 229
                 778999999.43355555 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.0077
                 H......H-TT--EEE-.-S CS
       LRR_4  20 e......klpnLkeLdLsgN 33 
                         lp L++L++ +N
  CDO72170.1 233 DamtvslTLPRLQTLHVYSN 252
                 24444445999999999666 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0004
                 SS--EEE--SS---.E-S-HH......H-TT--EEE-.-S-- CS
       LRR_4   1 pnLevLdLsnNqlt.diplle......klpnLkeLdLsgNnl 35 
                 +nL++L+L  + l+ di++l         p L++L+L  N +
  CDO72170.1 296 QNLQTLYLE-TFLSdDIEWLVealsfvRSPGLRTLSLVYNGR 336
                 69*******.67*******555565756899******88844 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011         1       2      16 ..      36      50 ..      35      52 .. 0.90
   2 ?   -2.6   0.1      0.93   8.4e+03       3      10 ..      89      96 ..      89      97 .. 0.84
   3 ?   -3.3   0.2       1.6   1.4e+04       3       8 ..     158     163 ..     156     165 .. 0.64
   4 ?   -3.5   0.3       1.7   1.6e+04       4      11 ..     215     222 ..     215     223 .. 0.76
   5 ?   -3.0   0.0       1.2   1.1e+04       4      13 ..     243     252 ..     241     260 .. 0.78
   6 ?    0.8   0.0     0.074   6.6e+02       3      14 ..     324     335 ..     322     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
       LRR_6  2 nthLteLdLsgNdIg 16
                +++L++L++s+N I 
  CDO72170.1 36 CSKLRTLEVSHNLIE 50
                89**********996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.93
       LRR_6  3 thLteLdL 10
                ++L++L+L
  CDO72170.1 89 RSLQTLHL 96
                5899**98 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.6
       LRR_6   3 thLteL 8  
                 ++L++L
  CDO72170.1 158 SSLRHL 163
                 677777 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.7
       LRR_6   4 hLteLdLs 11 
                 +L++L L+
  CDO72170.1 215 SLRTLTLT 222
                 68999887 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 1.2
       LRR_6   4 hLteLdLsgN 13 
                  L++L++ +N
  CDO72170.1 243 RLQTLHVYSN 252
                 6999998666 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.074
       LRR_6   3 thLteLdLsgNd 14 
                 + L++L+L +N+
  CDO72170.1 324 PGLRTLSLVYNG 335
                 569******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2836.05
//
Query:       CDO72171.1  [L=457]
Description: hypothetical protein BN946_scf184970.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.022   14.4   0.0    1.2  1  MIF4G     MIF4G domain


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.2e-06     0.022      55     135 ..     215     309 ..     178     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHSH........HHHHHHHHHHHHHHHHHHC......-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHG CS
       MIF4G  55 lyarlcgklnsrfq........qnFrikllnklqeefekry......eleneleenedgnrrrrlglvrflgelfklkmltskilldclkellss 135
                 l+a +++++++ f+          Fr +l +++  efe  +           +++  +   +++l  v f+gelf +++++  +++ cl+ l s+
  CDO72171.1 215 LVAPFAKAVHDAFKsfaggvctAAFRMHLMQCVWAEFEAIWqlgspsSFLTPSNKWPQTYLSQALVVVSFIGELFSCHLVHAGFVYQCLRLLVSD 309
                 55666666677777777777778888888888889998888888888777777888888899999************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3353.78
//
Query:       CDO72172.1  [L=555]
Description: hypothetical protein BN946_scf184970.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-89  299.1   0.0    9.7e-89  298.6   0.0    1.2  1  COesterase     Carboxylesterase family
    1.5e-05   25.0   0.3    8.6e-05   22.5   0.3    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6   0.0   1.1e-92   9.7e-89       6     493 ..      22     509 ..      17     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 298.6 bits;  conditional E-value: 1.1e-92
                 EETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SS.EEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSSTTS CS
  COesterase   6 etslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtg.vrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekkeakk 103
                 ++   ++ G++++     + + F GiPYAe P+g+lRF++P+ +++     +dA++f+++Cp   +              EDCL++nv  P  + ++  
  CDO72172.1  22 QLGGSTLIGTQNT----GQTEFFGGIPYAESPTGQLRFAPPVLKTDPGVaSFDASNFGASCPIGGQSN----------PVEDCLTINVLRPLGT-SSGA 105
                 5555555555555....4789**********************5555544************999522..........47***********985.8899 PP

                 SEEEEEEE--STTTS-BGCGS-THHHHHHH.....TSEEEEE----HHHHH-B-..SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHH CS
  COesterase 104 klPVlVwihGggfqtgsaseydgsaLaaeg.....nvivVtinYRlGvlGFlst..gdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAG 195
                 +lPV+Vwi+Gggfq g+as+ydg  ++ +g      ++ V +nYRlG+lGF +    ++    N+Gl+D+ +AL+WV++nI +FGGdp++vt+f +sAG
  CDO72172.1 106 GLPVMVWIYGGGFQAGDASQYDGIGFTITGinrgtPIVYVDFNYRLGALGFPQGveATSRGALNLGLKDMLTALQWVQHNIVAFGGDPSKVTVFAQSAG 204
                 99************************9999999999***************999555567777************************************ PP

                 HHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSH..HHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--S..S CS
  COesterase 196 aasvsllllsplsrglfkraIlqSGsalspwaiqkk..arkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdg..d 290
                 +++ + l l    + l + aI +SG+  +   +  +   r++ + +a+  +c+ ++s+++++clr+ s ++ll+aq    + +s +++++aPv+dg   
  CDO72172.1 205 SVALANLFLNSNLETLARAAIFESGAQSTLPMLPGSrrDRNWQNFVAAVPECSGANSSDTFDCLRQASISTLLNAQGA-ASGQSGEQFPWAPVIDGvgG 302
                 *99999999988899**********8766544444448889999999999**************************88.899999**********9889 PP

                 SSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHS.........TTTSSTCH.HHH CS
  COesterase 291 flpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeyt.........deadrdda.eks 377
                 ++p+ P++ll+  +    p + G n deg+ f+++ l++++++++   ++ + + +     +    +++   +++ y           + ++     + 
  CDO72172.1 303 VIPDLPSKLLAAGKfsRLPFISGSNLDEGTQFVSTSLSTTDQLSQFLVNFIDPAETGSTPSA---VDAAVMRLLQLYPddpaqgspyGSGNNTFGlGSE 398
                 9***********77*********************999988777777777666644444444...5666666777776555555544333333331444 PP

                 HHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHHSSTTS.. CS
  COesterase 378 rkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFaktgnPnk.. 474
                 +k+ +++ +dv f+   ++  ++ + +g pvY+Y f+ ++     ++  gv+hg+el yvf++p +e+       ++ls+ m +yw +Fa++ nPn   
  CDO72172.1 399 YKRAAAIGGDVWFHSVRRAWDQAASGQGVPVYAYLFTDPQ--AVGDPAQGVAHGSELGYVFNQPGEEPA------RTLSAVMKDYWLSFATSLNPNDgk 489
                 55555666666666555555555558999*******9988..3445689***************99887......89********************99 PP

                 .TTSS----B.TTTBEEEEE CS
  COesterase 475 .eeeekWpkytkeeekylki 493
                  ++++ W +yt++++  + +
  CDO72172.1 490 gNSRPTWTQYTPSNQASIAV 509
                 99*********999987765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.3   9.5e-09   8.6e-05       1      87 [.     110     210 ..     110     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 9.5e-09
                    EEEE--STTTS--TTTT...HHHHHHHHHHHTSEEEEEE---T....T...TS....-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth...dalcrelakelgavvvsvdYrlA....P...eh....pfPaavedalaalrwlaeqawelgadpsrivlaGdSaGG 82 
                    +v++ GGGf +g+++++     +++ + + + +v v  +Yrl     P   e+     +   ++d+l+al+w++ +  ++g dps+++++ +SaG 
     CDO72172.1 110 MVWIYGGGFQAGDASQYdgiGFTITGINRGTPIVYVDFNYRLGalgfPqgvEAtsrgALNLGLKDMLTALQWVQHNIVAFGGDPSKVTVFAQSAGS 205
                    69999*********999666678999999************97444432222311114555678************88*****************7 PP

                    HHHHH CS
  Abhydrolase_3  83 nlaaa 87 
                       a+
     CDO72172.1 206 VALAN 210
                    54444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3971.02
//
Query:       CDO72173.1  [L=302]
Description: hypothetical protein BN946_scf184970.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-17   61.5  43.3    5.5e-09   35.4  22.4    2.1  2  MFS_1         Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2  12.8   2.9e-12   5.2e-08      65     153 ..       1      89 [.       1      93 [. 0.94
   2 !   35.4  22.4   3.1e-13   5.5e-09      28     148 ..     136     258 ..     118     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.9e-12
       MFS_1  65 lllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav 153
                 ++ gl+l++++ l+++ fa+ +w l+l+  v  G+g+g+l+  ++ l+ +wf++ +rg+a g++ ag++lG    p +  +l++ +g r++
  CDO72173.1   1 MWSGLVLYFAA-LFCSsFATEVWqLILLQGVGVGVGGGLLYMPVIKLLPEWFSE-RRGLAGGIIFAGTGLGGFAFPFILNALLDRVGLRWT 89 
                 7899*******.555559999**9999999***********************9.********************************9997 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 3.1e-13
       MFS_1  28 gispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fa.sslwlllvlrvlqGlgagalfpagaaliadwfpk.eergra 122
                   s  ++  +l+l+   a+v++++lG+lsdrf + + ++++++l++al++++l+ fa + ++l +++ ++ Gl +g++ +  +a + +  ++ e  g+a
  CDO72173.1 136 A-SQLTATVVLALFNSSAVVGQIILGHLSDRF-PYPvIMVFSALGSALAAFFLWgFAnAAIFLYFFAVIFGGLSGGFSSTWPHASVEAAGNQpEYAGMA 232
                 3.66778889999*******************.6666************888888988889999999999999999999999****9999998899999 PP

       MFS_1 123 igllsagfslGailgpllggllassl 148
                 ++  + + +++a++gp+++gll++++
  CDO72173.1 233 FAGTAFFKGISAVIGPIISGLLLEAG 258
                 9*********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2152.88
//
Query:       CDO72174.1  [L=385]
Description: hypothetical protein BN946_scf184970.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0097   16.3   2.5        3.1    8.3   0.9    4.5  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.25   11.2   4.0        2.9    7.7   0.1    3.8  3  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   1.3e+04       1      13 [.      45      56 ..      45      63 .. 0.53
   2 !    5.3   0.1    0.0032        28      18      32 ..     105     124 ..      74     132 .. 0.74
   3 !    8.3   0.9   0.00035       3.1       1      33 [.     115     152 ..     115     157 .. 0.79
   4 ?    2.8   0.0      0.02   1.8e+02      20      32 ..     320     335 ..     292     348 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
                SS--EEE--SS-- CS
       LRR_4  1 pnLevLdLsnNql 13
                p+L+++ ++ +++
  CDO72174.1 45 PSLRTVVIN-CRI 56
                445555554.344 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0032
                 -.....HHH-TT--EEE-.- CS
       LRR_4  18 l.....leklpnLkeLdLsg 32 
                 +     l+ +p+L++L+Lsg
  CDO72174.1 105 FsvpisLAHFPSLRSLTLSG 124
                 544335568*********87 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00035
                 SS--EEE--S...S-..--E-S-HHH-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsn...Nq..ltdiplleklpnLkeLdLsgN 33 
                 p+L++L Ls+   N   + d+ +l++l  L++L+L  N
  CDO72174.1 115 PSLRSLTLSGptrNEldIHDLCPLSQLSGLESLTLGAN 152
                 799******76557666667777999*********556 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.02
                 H...H-TT--EEE-.- CS
       LRR_4  20 e...klpnLkeLdLsg 32 
                 +   ++p+L +L++++
  CDO72174.1 320 SlaaGCPDLSTLYMTR 335
                 23347********954 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00033       2.9      12      58 ..      74     124 ..      71     130 .. 0.72
   2 ?    5.3   0.8    0.0018        16      44      58 ..     110     124 ..     108     154 .. 0.58
   3 ?   -0.9   0.0      0.16   1.4e+03      20      54 ..     286     321 ..     281     324 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00033
                 --SEE-TTSSTT-TT--EEE--SS.---G...GGGGGGTT--S-.EEE--S CS
       LRR_8  12 rltslddeaFkglsnLkvLdLsnN.lltt...lspgafsgLpsLrsLdLsg 58 
                 rl sl  +  +++++L++L   +  +ltt     p +++++psLrsL+Lsg
  CDO72174.1  74 RLRSLTHDLSSRVPQLTELTFCYGgSLTTaqfSVPISLAHFPSLRSLTLSG 124
                 5666666666667777777776655555533356999************97 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0018
                 GGTT--S-.EEE--S CS
       LRR_8  44 afsgLpsLrsLdLsg 58 
                 +++++psLrsL+Lsg
  CDO72174.1 110 SLAHFPSLRSLTLSG 124
                 455566666666654 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.16
                 SSTT.-TT--EEE--SS---GGGGGGGTT--S-.EE CS
       LRR_8  20 aFkg.lsnLkvLdLsnNllttlspgafsgLpsLrsL 54 
                 +F++ +++L+ ++++  + +  sp+ ++g p L sL
  CDO72174.1 286 TFSRsWPSLEAFSITGHNSKGNSPRFLVGIPGLLSL 321
                 555559999999998888888889999999988666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2817.50
//
Query:       CDO72175.1  [L=71]
Description: hypothetical protein BN946_scf184970.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       130  (0.00725082); expected 358.6 (0.02)
Passed bias filter:                      111  (0.00619109); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 542.23
//
Query:       CDO72176.1  [L=571]
Description: hypothetical protein BN946_scf184970.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0013   18.2   0.0     0.0023   17.5   0.0    1.3  1  DUF676        Putative serine esterase (DUF676)
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.024   14.5   0.0    1.4  1  Palm_thioest  Palmitoyl protein thioesterase
       0.23   11.1   0.0       0.39   10.4   0.0    1.2  1  PGAP1         PGAP1-like protein


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.9e-07    0.0023      80     132 ..     187     230 ..     172     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.9e-07
      DUF676  80 kiSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPhLGvlys 132
                  i f++hS+Ggl  r+ i  +k              p  ++t+a+Ph G+ ++
  CDO72176.1 187 GINFLAHSMGGLDCRHLISHIKPTD---------YAPLSLTTIATPHRGSPFM 230
                 599****************998333.........3699*********998776 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.1e-06     0.024      46     113 ..     166     234 ..     116     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
  Palm_thioest  46 sffgnlndqveavckklelangfhaiGfSQGglflRaliercddkkn.vrnlislggpqaGvfglllck 113
                   +++++  ++++ + +     +g++++++S Ggl +R+li ++++ +    +l ++++p+ G   + +c+
    CDO72176.1 166 GSVSSRAENLDRFLRGRASGRGINFLAHSMGGLDCRHLISHIKPTDYaPLSLTTIATPHRGSPFMDWCR 234
                   333333444444444445679*********************8877687799********987654554 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.5e-05      0.39      92     136 ..     187     230 ..     175     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.5e-05
       PGAP1  92 sviliGHSmGGivaraaltlknyikqsvntiltlasPhalpplsf 136
                  +  ++HSmGG+  r ++ + +  + +  ++ t+a+Ph  +p  +
  CDO72176.1 187 GINFLAHSMGGLDCRHLISHIKPTDYAPLSLTTIATPHRGSPF-M 230
                 577899**************998888889999*******9997.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4122.97
//
Query:       CDO72177.1  [L=557]
Description: hypothetical protein BN946_scf184970.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-52  178.6  40.5    2.3e-52  178.3  40.5    1.1  1  AA_permease_2  Amino acid permease
    6.6e-12   44.8  40.2    1.3e-07   30.6  23.8    2.1  2  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3  40.5   2.6e-56   2.3e-52       1     424 [.      59     524 ..      59     526 .. 0.87

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 2.6e-56
  AA_permease_2   1 lsllsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaa....fgkkvaflsawfnwfayv 89 
                    +sll+++a++++++  +g++ ++   ++asgg + ++w+w++  +++++ ++ +aE++s  p+s G+y +++++    ++ ++ ++++w+n+ ++v
     CDO72177.1  59 FSLLDTVAFAFSIMSVIGGVSSTlsfGLASGGHLGMVWGWFIPYLFVICIAASMAEMASSVPTSAGLYYFSAKLaperYSALASWVTGWANVTGQV 154
                    7999**********888888777888899****************************888**************4444478888************ PP

  AA_permease_2  90 pvlasilsvaasyllnalgpdlqgn....twltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...ste 178
                      ++si + +a+++ +a++ ++++       +ty+i  ail ++ ++++     +++   +  ++    +++ +i+l ++++d++  ++    s+e
     CDO72177.1 155 TLVCSIDYTVAQMITTAIAVNTDNAvvlgAGPTYGILLAILFVHGVVCSADSMRTDWWSPFASLTAG-ATVAAVIALLVCAGDRKVPTQTaffSFE 249
                    ******************98765557776669*************************9988777777.5899999999999999877766678999 PP

  AA_permease_2 179 tdtffpngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvnia..flgvvpddeianlsnlgsvaalffeavggk 270
                    ++t + n  + +ll++++ +ws++G++saa+++ee     + +p+ai ++++ v+++++ + ia  f++++ +  +++ + ++ +++l+++ +g++
     CDO72177.1 250 NHTGWRNDGWAFLLSFAAPMWSLTGYDSAAHIAEETAGaaRAAPIAILVSVAAVGGMGWILLIAasFATASVPALLDT-ELSLPMGQLLLDVLGKR 344
                    99999886666899*********************6644789*****************9888732344444444444.335669*********66 PP

  AA_permease_2 271 vvaiivvilial....................sllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllas 343
                     + +i ++ i+                       ++++ ++ + +srv++a+ardg+lP  +++ + + ++++p++a++l++ +s +l+ l+ + s
     CDO72177.1 345 GMLAIWSFTIIAqvrpprlarpnradsqraigLQFLCGAAQAVDASRVVFAFARDGALPwsTWWERLDaRTQTPVNAVWLVVALS-ALCGLLGF-S 438
                    55555555555599*****************999***************************************************.66667777.5 PP

  AA_permease_2 344 saaynfllsvsslgliisyllliigalilrkkrphlkr.....pgkilvaiigalfllfllvalffppkgpatqssliyt.iiltva 424
                    ++a++ l+ +s++gl+ sy+ +i++++   +++ +++      ++ +++++i++l+++f++v+l fpp + +t   + y+ +i++++
     CDO72177.1 439 ATAFSSLAGASVIGLYTSYATPIFLRITSGRRKLVRGPfslgeWY-MPIGAISVLWVTFIVVLLSFPPSQTTTAVQMDYAsVIVFAV 524
                    9***********************999999888887655555476.89*****************************9996555554 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6  23.8   1.5e-11   1.3e-07       6     256 ..      70     316 ..      65     357 .. 0.73
   2 !   20.2   8.4   2.1e-08   0.00019     308     471 ..     386     537 ..     379     541 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.5e-11
  AA_permease   6 alggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpe....lGfviGlnylfswit.vlaleltaas 98 
                  ++ +viG g+   l++ l+++G+lg++ ++ ++++++++++ s++e+a+ +p s+g y+++++   ++    +++v+G+  +  ++t v  +++t+a+
   CDO72177.1  70 SIMSVIG-GVSSTLSFGLASGGHLGMVWGWFIPYLFVICIAASMAEMASSVPTSAGLYYFSAKLAPERysalASWVTGWANVTGQVTlVCSIDYTVAQ 166
                  5555666.67778999*******************************************999888776111245666666443333313345666666 PP

  AA_permease  99 iliqfwelvtdlpkawvt........gavflvvlliinlvgvkvygeaefi..lalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknn 185
                  ++ + +  +td+     +        g ++l++l++  +v    + ++ ++  +a++   a +a +i + +   + k  + +  f ++ ++++    +
   CDO72177.1 167 MITTAIAVNTDNA----VvlgagptyG-ILLAILFVHGVVCSADSMRTDWWspFASLTAGATVAAVIALLVCAGDRK-VPTQtAFFSFENHTG----W 254
                  6666665566655....1345688855.66777777777777777788*****999988888888888843333333.333235555555555....3 PP

  AA_permease 186 lppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligl 256
                    +g          +f+  f++ + ++tG+ + a ia+E++  +++ P+ail  v  ++ +  ++l+++++
   CDO72177.1 255 RNDG---------WAFLLSFAAPMWSLTGYDSAAHIAEETAGAARAAPIAILVSVAAVGGMGWILLIAASF 316
                  3333.........68**************************************999998776655555544 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.1e-08
  AA_permease 308 lysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsie 402
                   + asRv++++a+dg++P   ++ +   + + P++a+ l+ ++s+l+ ll  +++a       ++++++++ + +++ ++++ + +R +   ++    
   CDO72177.1 386 AVDASRVVFAFARDGALPwstWWERLDARTQTPVNAVWLVVALSALCGLLGFSATA-------FSSLAGASVIGLYT-SYATPIFLRITSGRRKLVRG 475
                  5679****************66666677999*******************999999.......88888877766666.56667779999888888888 PP

  AA_permease 403 elgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvk 471
                   ++   +++p g+i+vl + ++i+++l++ +++t  ++ ++++     a+ + + +f+  ++ + l ++
   CDO72177.1 476 PFSLGEWYMPIGAISVLWV-TFIVVLLSFPPSQT--TTAVQMD----YASVIVFAVFVFAGCSWLLSAR 537
                  8888899999999988765.55566666666666..2333333....3333444444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3583.75
//
Query:       CDO72178.1  [L=808]
Description: hypothetical protein BN946_scf184970.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   35.0   0.1     0.0002   21.1   0.1    2.7  2  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   1.7e-05       0.3       3      57 ..     485     539 ..     484     549 .. 0.85
   2 !   21.1   0.1   1.1e-08    0.0002      96     135 ..     697     734 ..     686     746 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.7e-05
       DDE_3   3 vfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglaf.vtfee 57 
                 +f+DE+ f+ ++++r aw +++++  l+++gr++ + +  +++e++g+ +   +++
  CDO72178.1 485 LFHDECCFHVNDYKRSAWLPPDTTI-LQKKGRGRLIHVSDFITEATGRLViHDEDG 539
                 79**********************8.999999999999999999998888555555 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.1e-08
       DDE_3  96 lrelveeeadrlellylPpySPelNpiEivwsklkrellk 135
                 l+ l++e  +++e ++lP+   elNpiE+ w+++k++ ++
  CDO72178.1 697 LEMLIRE--AGHECIFLPKFHCELNPIEMYWGWCKYRYRE 734
                 4556777..9**************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 5034.04
//
Query:       CDO72179.1  [L=321]
Description: hypothetical protein BN946_scf184970.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-44  149.7   0.2    8.3e-44  149.4   0.2    1.1  1  adh_short     short chain dehydrogenase
    3.6e-37  128.2   0.1    4.6e-37  127.8   0.1    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.3e-07   31.7   0.1      2e-07   31.1   0.1    1.2  1  KR            KR domain
      0.002   17.6   0.0     0.0031   16.9   0.0    1.2  1  DUF1776       Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.045   13.8   0.0    1.7  1  DUF3012       Protein of unknown function (DUF3012)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.2   2.3e-47   8.3e-44       2     191 ..      45     239 ..      44     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 2.3e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 v+++tGa+sGIGra a elak G k++++d +e+ l e+a+e+ +   ++++l +++Dv++ ++ve+l +k+ + +g++ vL+nNA+i  ++ +s    
  CDO72179.1  45 VAVITGAASGIGRAAALELAKIGLKIAIADVNEQGLGETAAEVAKIvgESNVLSVPTDVSKLDQVERLRDKVYEAWGEVGVLMNNAAI-APKGTSWEGL 142
                 89*******************************************998889*************************************.5666667778 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTT.EEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT...EEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpamlkqss.GrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg...irvnavaPGlvdTdmakelr 191
                 ++w++v++vNl+gv+++ ++++p ml q++   I+n++S +g    +g +aY A+Kaav++lt+sla+el++t     + + + PG + T+m+ +++
  CDO72179.1 143 DNWRKVFDVNLFGVLNVQQTFVPLMLHQENpSIIINTGSKQGITNPPGNPAYNATKAAVKSLTESLAHELRETPavnLTAHLLIPGWTYTGMTGAAE 239
                 89************************665516679*************************************97755788899*********98765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.1   1.3e-40   4.6e-37       1     194 [.      50     250 ..      50     261 .. 0.91

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.3e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   GaasgIGra+A +la+ G +++++d+ne++  ++++e+a+ +g++ v  +++DV++ +qve+l ++v e +g++ +l+nna+iapk  g       +
    CDO72179.1  50 GAASGIGRAAALELAKIGLKIAIADVNEQGlGETAAEVAKIVGESnVlsVPTDVSKLDQVERLRDKVYEAWGEVGVLMNNAAIAPK--GT-SWEGLD 143
                   9*****************************99**********9777779*************************************..44.444689 PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG...GTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp...kgiRvNavspgpikTlaasgikg 184
                   ++++++dvnl +++++ + ++plm ++   + i+n+ s ++    p++ ay+a+Kaa+++lt +lA+el +    + + +   pg++ T ++ +++g
    CDO72179.1 144 NWRKVFDVNLFGVLNVQQTFVPLMLHQenpSIIINTGSKQGITNPPGNPAYNATKAAVKSLTESLAHELREtpaVNLTAHLLIPGWTYTGMTGAAEG 240
                   **********************776665778899999**9999999999********************985456899999***********99999 PP

                   HHHHHHHHHH CS
  adh_short_C2 185 fdelleelea 194
                   +++   ++ a
    CDO72179.1 241 KEKPAGAWTA 250
                   8876666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   5.6e-11     2e-07       4     176 ..      47     221 ..      45     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 5.6e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 +itG++ g+G++ a  la+ g +  +    + +   + +a++a++   + +v  v+ Dvs+ d+ve+l +++ +  +++   ++ A ++  k  +    
  CDO72179.1  47 VITGAASGIGRAAALELAKIGLKIAIADVNE-QGLGETAAEVAKIVG-ESNVLSVPTDVSKLDQVERLRDKVYEAWGEVGVLMNNAAIAP-KGTSWEGL 142
                 8********************7644443334.455555667777776.6899999******************98899866666666655.55677789 PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE- CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwg 176
                 +++++v+   + G+ n+++++ +     e+  +++ + S  g++  +g  +Y a+ a + +l e+ +++  ++ ++n++
  CDO72179.1 143 DNWRKVFDVNLFGVLNVQQTFVPlmlhqENPSIIINTGSKQGITNPPGNPAYNATKAAVKSLTESLAHELRETPAVNLT 221
                 *******************9987777769999******************************99999888888888776 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.8e-07    0.0031     113     187 ..     142     214 ..     138     226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.8e-07
     DUF1776 113 lsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrp 187
                 l++w++++  +l+  + + q ++pl+    ++++ ii+ + s     n+p  +    +  a+++l+e+L++elr+
  CDO72179.1 142 LDNWRKVFDVNLFGVLNVQQTFVPLMLH--QENPSIIINTGSKQGITNPPGNPAYNATKAAVKSLTESLAHELRE 214
                 589***********************98..6899999999999999999999999******************94 PP

>> DUF3012  Protein of unknown function (DUF3012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.045      11      27 ..     241     257 ..     240     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
     DUF3012  11 keKpkgdWtaneatdFA 27 
                 keKp+g Wta+e++ ++
  CDO72179.1 241 KEKPAGAWTAQETVLYM 257
                 79************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2194.13
//
Query:       CDO72180.1  [L=469]
Description: hypothetical protein BN946_scf184970.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3215.55
//
Query:       CDO72181.1  [L=605]
Description: hypothetical protein BN946_scf184970.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0034   17.2   4.0      0.004   17.0   1.0    2.7  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.0   2.2e-07     0.004       7      45 ..      11      67 ..       9      68 .. 0.64
   2 ?   -2.2   0.1      0.22   3.9e+03       8      25 ..     541     558 ..     540     559 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.2e-07
  F-box-like  7 EiLlqIF.................syL.p..psdLlrlalVCrrWrrvaldtplLWrrl 45
                +iL  IF                 + L +  +++L++ ++VC ++r++a   p LW+++
  CDO72181.1 11 DILHCIFqyfevehwqyatsevysDPLeNarLQSLTASTRVCTHFRDAA--LPVLWKTI 67
                688888844444444444443333123221144699999**********..77****97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.22
  F-box-like   8 iLlqIFsyLpps.dLlrla 25 
                 iL +IF+ L+ + +Llrl+
  CDO72181.1 541 ILDRIFH-LDVTpSLLRLS 558
                 6778996.88666999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3988.89
//
Query:       CDO72182.1  [L=1039]
Description: hypothetical protein BN946_scf184970.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-55  185.9   0.0    1.3e-54  185.5   0.0    1.2  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
    4.4e-19   67.6   0.0    5.6e-14   50.7   0.0    2.1  2  Bac_GDH        Bacterial NAD-glutamate dehydrogenase


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.0   1.4e-58   1.3e-54       1     240 [.     677     937 ..     677     941 .. 0.87

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 1.4e-58
                    T--.TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--.SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSH CS
  ELFV_dehydrog   1 GGs.ldrpeaTglGvvyyveemlkklkldslegkrvaisGs.GnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykk 94 
                    GG+ +d +++T+l+v++yv  ++k+l+l++ + ++v+++G+ G++gs+++ll+     k++a++D+sGv++dp Gl++eel++l++ rk v+ ++ 
     CDO72182.1 677 GGVpHDVYGMTSLSVRQYVLGIYKQLGLREKDITKVQTGGPdGDLGSNEILLS---SDKTIAIIDGSGVLHDPAGLNREELVRLAKLRKPVAFFDV 769
                    99*9*************************************************...66**************************999999777776 PP

                    H.........STSTSEEESHHSHH...................HHSS-SEEEE-.SSTTSB-HHHHTHTH....HTT-SEEE-SSSS-B-HHHHHH CS
  ELFV_dehydrog  95 s.........sekkaeyieneeel...................lelkvdilvPc.Atqneideenakali....kngvklvvEgANlpttqeAkei 157
                    s         +      +e++ ++                   l++k+d++vPc +++++++ +n++al+    k + k++vEgANl++tq+A+  
     CDO72182.1 770 SklskdgylvK------VEEQ-DVklpsgevvldgtdfrngahLRFKADLFVPCgGRPEAVNISNVAALVdadgKPHFKYIVEGANLFLTQQARLF 858
                    66655455441......3332.444555555789999888888889************************8888889******************* PP

                    HHHTT-EEE-HHHHTTHHHHHHHHHHHHHHCT----HHHHHHHHHHH...HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHH CS
  ELFV_dehydrog 158 leeagvlvvpdkaaNaGGVtvSslEmlqnlarlswteeevdeklkki...mkeifkavveeaeeykqelvkganiagfekvaeamk 240
                    le+++v++++d +aN+GGVt+SslE+l+ l     +++e+++ +  +    +e++k++v+ +++     + ++++a+f  +++++ 
     CDO72182.1 859 LEKRKVILFKDSSANKGGVTSSSLEVLAGLGL---SSQEYVDLMIFKdgkPSEFYKSYVRDIQQ----KIIENAAAEFSCIWREHA 937
                    ****************************9666...66666666655546789999999999999....8899999*******9985 PP

>> Bac_GDH  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   6.3e-18   5.6e-14     605     776 ..     403     590 ..     386     599 .. 0.83
   2 !   14.8   0.0   4.4e-07    0.0039    1057    1100 ..     841     884 ..     832     966 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 6.3e-18
     Bac_GDH 605 ltfsqeyieetllkhpeiarllvelFearfdpaleeeeeeeee..............ekleeeieeaL.devasldedrilrrllelieatlRtnfyqk 688
                  tf++e i++++ +h+++ +ll+  F +   p+++e+++   +              +    e+ +++  +v + +e ++l ++l + + +l+tnfyq 
  CDO72182.1 403 ETFTRESIAQVIHAHADLINLLYVNFAMTHYPETDEAAQLMPTlsyqrlrtqmpltdS----ELYDKIrRTVPNKHELQVLESFLIFNKHVLKTNFYQP 497
                 578999***************************9988876655899999888744433....4444441469999999********************9 PP

     Bac_GDH 689 dedgeakeyislKldpskipelPePr.PlfEifVysprvegvHLRggkvARGGlR..WSDRreDfRt.......EvLGLvKaQqvKNavIVPvGaKGG 776
                      +k  +s++l+p+ +pe+  P+ P+   fV   ++ g H+R+ +vARGG+R   S  re +         E  GL  +Q  KN  I   GaKG 
  CDO72182.1 498 -----TKVALSFRLAPDFLPEVEYPKkPYGMFFVIGGEFRGFHIRFKDVARGGIRivMSRNRENYSInqrmlfdENYGLASTQSLKNKDIPEGGAKGT 590
                 .....6889****************64788889**********************55588899985322224448889*********99999999995 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.4e-07
     Bac_GDH 1057 kvvgEGgNLGltQlgRiEyalkggrintDaiDNsaGVdcSDhEV 1100
                  k + EG+NL ltQ++R+   ++++ +  D   N +GV +S  EV
  CDO72182.1  841 KYIVEGANLFLTQQARLFLEKRKVILFKDSSANKGGVTSSSLEV 884 
                  789****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 6405.25
//
Query:       CDO72183.1  [L=905]
Description: hypothetical protein BN946_scf184970.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-09   37.1   0.3    1.9e-06   28.3   0.0    2.4  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.1e-10   1.9e-06       1      80 [.     470     545 ..     470     552 .. 0.77
   2 !    5.5   1.2    0.0012        21     122     146 .]     556     580 ..     546     580 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.1e-10
         HET   1 YeaLSYvWgdskekeeievngklleltenledalqvl.rk..lgerylWiDaiCInQdddkekskqvqlmadIYsnAelviva 80 
                 Y+a+S+vW +   +++      +  l++ + + l++l rk   +    WiD++C+ ++ ++ ++  ++lm+d Y++A++v+v 
  CDO72183.1 470 YVAISHVWAEGMGSTT------EEGLPRCVVKRLTHLtRKllPESGAFWIDSLCVPRE-TSMRKLAIRLMGDTYRQATMVLVI 545
                 9*******77654222......2346666666666552445346688***********.89999****************985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0012
         HET 122 lekeeraieellespwfkRvWvlQE 146
                  +++e+ i  + +s w +R+W+ QE
  CDO72183.1 556 ANSHEENILWIGSSAWIRRIWTAQE 580
                 5566677777899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 6194.26
//
Query:       CDO72184.1  [L=310]
Description: hypothetical protein BN946_scf184970.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2139.21
//
Query:       CDO72185.1  [L=551]
Description: Glycoside Hydrolase Family 20 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-78  264.3   0.2    4.4e-76  256.6   0.2    2.1  1  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
    1.5e-17   64.5   0.0    2.8e-17   63.6   0.0    1.5  1  Glycohydro_20b2  beta-acetyl hexosaminidase like
    4.1e-07   30.8   0.1    1.2e-06   29.3   0.0    1.8  2  Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.6   0.2   7.4e-80   4.4e-76       1     353 [.     174     506 ..     174     507 .. 0.90

  Alignments for each domain:
  == domain 1  score: 256.6 bits;  conditional E-value: 7.4e-80
  Glyco_hydro_20   1 fkyRGlmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieVi 95 
                     ++yRG+mlD++R+f++v++ikr++Dam+++K+ ++HwH++D+q+++le++ y eL+ kga+++s         +Y+ +d+++iv+YA +rgi+V+
      CDO72185.1 174 YPYRGFMLDTSRNFFPVSDIKRTLDAMSWVKMSQFHWHVSDSQSFPLEVPGYTELASKGAYDPSM--------VYSPSDVQDIVSYAGARGIDVM 260
                     99*************************************************************99........********************** PP

  Glyco_hydro_20  96 pEidmPgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkkkqwkkspeiqalikeeg 190
                     +Eid+PgH++ + +a pe +++  +                         +f + +l  va +fps+++ +GGDE++++++ ++p  qa +k+ g
      CDO72185.1 261 IEIDTPGHTAIISAAHPEHIACA-E--------------------ASPWTTFANGLLASVARMFPSSVMSTGGDELNAECYAQDPDTQADLKATG 334
                     ******************99982.1....................1234579999*************************************998 PP

  Glyco_hydro_20 191 lksveelqsyfvkrvekilkekgkkligWdeilekgkasklakknttvqsWrelekeaaeklakkgydvilspadalYlDfgqekkeeeegleia 285
                      +++e+    f+++++  ++++gk++++W+e++ +++  +++ ++t+v +W +   ++a ++a+k+++++  p+d++YlD+g +++  +++++ +
      CDO72185.1 335 -RTLEQALDVFTQKTHAAIRAEGKTPAVWEEMVLDHN--VTLGNDTIVLVWIS--SANAAAVAAKNFRLVHGPSDYFYLDCGAGEWIGDDVAAHS 424
                     .89999999***************************9..999999********..568999***********************99998877766 PP

  Glyco_hydro_20 286 t.....faslekv.................ynyepvakeaastslseeekkkkilGveaalWtEvirdsaeleyrvfPRlaalAErlWsk 353
                     +     f++++kv                 y ++p+a+       ++++++ ++lG+e  lWtE+   +++l+  v+PR+a+ AE+ W++
      CDO72185.1 425 NswcdpFKTWQKVsmmvaervlpshrgkqsYTFDPLANI------TKSQAH-LVLGGEQLLWTEQS-GPENLDPIVWPRAASSAEVFWTG 506
                     677778777777766666665665554444555555555......567775.**************.9********************96 PP

>> Glycohydro_20b2  beta-acetyl hexosaminidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   4.7e-21   2.8e-17       1     137 []      19     151 ..      19     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 4.7e-21
  Glycohydro_20b2   1 lwPaPteytigsktlrlspsnfrlkvesaaseaveellheafdrtlkelfkskvvpwakeprnskfepkvstavskkkediktvevsltsekse 94 
                      lwP+P++++igs  l+l+p  f ++v+ a++    + l++a++rt + l+++k  + +  + +s++++       +   +++++++slt+ +++
       CDO72185.1  19 LWPQPRSLEIGSAALKLAP-TFDIHVNIAHPP---SDLEDAVSRTKAFLRNDKLGRLVVGRGASDHAA------VQRARSLSSLQLSLTHGSAV 102
                      7******************.888888888844...48**********************888888776......467888********777754 PP

  Glycohydro_20b2  95 ....ae.el.tlevdEsYtLsvksasgsakisansvlGalhGLeTlqQL 137
                           e +l  +   E YtL+v+++ + a i ans+lG+l+GL+T++QL
       CDO72185.1 103 ksitDEtRLpIGTRSEGYTLHVPADGSPAAIVANSSLGLLRGLTTFSQL 151
                      444436788445568*******87777*********************9 PP

>> Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     2e-10   1.2e-06       3     114 ..      18     158 ..      16     170 .. 0.76
   2 ?   -3.6   0.0         3   1.8e+04      35      45 ..     332     342 ..     323     362 .. 0.51

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2e-10
  Glyco_hydro_20b   3 aviPePqeveaqegefalgsevtivvee....aadeatadllaevlkaatgirlteakepgkgdi.......rllalkd............... 70 
                      a++P+P+++e ++++++l  +  i+v+       +e+++ + ++ l++ +  rl+  +++ +++              +               
       CDO72185.1  18 ALWPQPRSLEIGSAALKLAPTFDIHVNIahppSDLEDAVSRTKAFLRNDKLGRLVVGRGASDHAAvqrarslS-----Slqlslthgsavksit 106
                      79*************99997766666433333888999*********66666777555555554434444330.....1556666677788888 PP

  Glyco_hydro_20b  71 ......aelgaEgYrLavded..titiegkdtdGlfyGvqTLrqllpqaagg 114
                             ++++EgY+L v +d   ++i ++++ Gl+ G++T+ ql+ + ag+
       CDO72185.1 107 detrlpIGTRSEGYTLHVPADgsPAAIVANSSLGLLRGLTTFSQLWYEYAGQ 158
                      8899999**********9887669**********************998743 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
  Glyco_hydro_20b  35 atadllaevlk 45 
                      at ++l++ l+
       CDO72185.1 332 ATGRTLEQALD 342
                      44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3562.56
//
Query:       CDO72186.1  [L=238]
Description: hypothetical protein BN946_scf184970.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.002   17.5   0.0     0.0041   16.4   0.0    1.4  1  DUF3450   Protein of unknown function (DUF3450)
  ------ inclusion threshold ------
      0.043   14.1   0.6       0.19   12.1   0.2    2.1  2  TPR_12    Tetratricopeptide repeat
      0.095   12.7   0.1       0.31   11.0   0.0    2.0  2  Cbl_N     CBL proto-oncogene N-terminal domain 1


Domain annotation for each model (and alignments):
>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.9e-07    0.0041      58     125 ..      26      93 ..      21     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.9e-07
     DUF3450  58 eeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeqfveldlPflleeRq 125
                 + ++ l+   +++++  ++q++e+  l+ q +  e+ie+++  +l+k   +L qf++  +P + +e +
  CDO72186.1  26 SAVDTLRGHIAEVRDGSEEQRRELGVLKPQDKTPEQIEQRVAAYLDKCYWQLAQFYRYSVPCRIDEAE 93 
                 5677888889999999**********************************************999865 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.1e-05      0.19      18      73 ..      88     141 ..      73     144 .. 0.84
   2 ?   -0.6   0.0      0.27   1.6e+03       8      22 ..     162     176 ..     149     178 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
      TPR_12  18 rydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 r deA+ +l++ ++ a +l G++++ + + + + ++   a+++ +eA++l++ea +
  CDO72186.1  88 RIDEAEPYLREIIRYA-KLKGGKRDVAPELYLAVAIHK-AAEKEQEAISLFTEAFN 141
                 789*********9999.788999977777777777775.999***********975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.27
      TPR_12   8 nlaavlrrlgrydeA 22 
                 ++a +lrr +r +eA
  CDO72186.1 162 HWARLLRRVERVQEA 176
                 355666666666666 PP

>> Cbl_N  CBL proto-oncogene N-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.2e-05      0.31      44      93 ..      95     146 ..      69     154 .. 0.82
   2 ?   -2.2   0.1      0.63   3.8e+03      29      38 ..     194     203 ..     162     221 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHS..-HHH..HTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHHT-T CS
       Cbl_N  44 lLrevaekrrekeea..lseaeylriflanllkkskqvakLfkeakeklfee 93 
                  Lre+++ ++ k  +  +    yl++ +++ ++k +++++Lf ea ++l  +
  CDO72186.1  95 YLREIIRYAKLKGGKrdVAPELYLAVAIHKAAEKEQEAISLFTEAFNSLDMD 146
                 6788877766544333388889*********************998877655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.63
                 SSSS-HHHHH CS
       Cbl_N  29 nspPylldll 38 
                   pP l+ l+
  CDO72186.1 194 LPPPKLKALV 203
                 3355555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1724.31
//
Query:       CDO72187.1  [L=415]
Description: Glycoside Hydrolase Family 20 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-90  302.2   0.0      7e-90  301.9   0.0    1.0  1  Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domai
  ------ inclusion threshold ------
      0.012   15.0   0.1       0.38   10.1   0.0    2.2  2  Cellulase       Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.9   0.0   7.9e-94     7e-90       1     353 [.      38     370 ..      38     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 301.9 bits;  conditional E-value: 7.9e-94
  Glyco_hydro_20   1 fkyRGlmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieVi 95 
                     ++yRG+mlD+aR++++v++ikr++Dam+++KlN +HwH++D+q++++ei+ + +L++kga+++s+        +Y+ +d+r+i++YA +rgi+V+
      CDO72187.1  38 YPYRGFMLDTARNYFPVADIKRTLDAMSWVKLNEFHWHIVDSQSFPFEIPGFTDLAQKGAYSSSQ--------VYSLSDVRDIISYAGARGIDVM 124
                     99*************************************************************99........********************** PP

  Glyco_hydro_20  96 pEidmPgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkkkqwkkspeiqalikeeg 190
                      Eid+PgH++ +++a pe+v++ + ++ +   ++ e++ ++l  +  ++ ++++k+++ va++fps+++ +GGDE++++++  ++  qa +++ g
      CDO72187.1 125 VEIDTPGHTAIIAEAHPEYVAC-PGATPWA-TYANEPPAGQLRFADSKVTDYIAKLFTAVATIFPSKLFSTGGDELNTNCYAIDEPTQASLNATG 217
                     **********************.7888888.8999*********************************************************998 PP

  Glyco_hydro_20 191 lksveelqsyfvkrvekilkekgkkligWdeilekgkasklakknttvqsWrelekeaaeklakkgydvilspadalYlDfgqekkeeeegleia 285
                      +++e+    f+++++k l+ kgk++++W+e++  ++  ++++k+t v +W +   ++++++a+kgy++i +++d++YlD+g + ++  +++  +
      CDO72187.1 218 -RTLEQALDAFTQETHKALEVKGKTPVVWEEMVLVHN--VTLSKETKVLVWIS--SDNVKAVAEKGYKLIHAASDYFYLDCGGGGWVGANPNGNS 307
                     .889999999************************999..899999********..679***************************9988765433 PP

  Glyco_hydro_20 286 t...faslekvynyepvakeaastslseeekkkkilGveaalWtEvirdsaeleyrvfPRlaalAErlWsk 353
                         f+++++ y+++p+a+  a      ee  k++lG++  lWtE+   +++l++ v+PR+a+ AE  W++
      CDO72187.1 308 WcdpFKTWQHAYSFNPTANLTA------EES-KLVLGGQHLLWTEQS-GPQNLDSIVWPRAASSAELFWTG 370
                     3347***************965......444.49*************.9********************96 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.2e-05      0.38      59     116 ..     104     186 ..      71     190 .. 0.69
   2 ?    2.7   0.0    0.0079        71     143     187 ..     266     311 ..     207     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHTT-EEEEEEESS...................TTT..CSSSSTTTTHHH......HHHHHHHHHHHHHHHH CS
   Cellulase  59 nslerveevvkyakenglyvildiHse...................egw..ltkadgnssedt......aeeffkklwtqiAery 116
                  sl++v +++ ya ++g+ v+++i  +                     w  + ++++ ++          +++++kl t++A+ +
  CDO72187.1 104 YSLSDVRDIISYAGARGIDVMVEIDTPghtaiiaeahpeyvacpgaTPWatYANEPPAGQ--LrfadskVTDYIAKLFTAVATIF 186
                 5899********************999777777777766666655544444222222222..12333336677777888888766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0079
                 HHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHT.BHHHHHCTSG CS
   Cellulase 143 eeadevkayaeeaikaIRavgpnrliivegnswsg.nldgavlndP 187
                  ++d+vka+ae+ +k I a+    ++ ++g +w g n++g+   dP
  CDO72187.1 266 ISSDNVKAVAEKGYKLIHAASDYFYLDCGGGGWVGaNPNGNSWCDP 311
                 5678999999999999999999999999999998844444333366 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2990.21
//
Query:       CDO72188.1  [L=545]
Description: hypothetical protein BN946_scf184970.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-45  154.6   0.1    1.8e-45  154.0   0.1    1.3  1  ENTH      ENTH domain
    0.00014   20.9   0.0     0.0002   20.5   0.0    1.2  1  ANTH      ANTH domain
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.061   13.2   0.0    1.3  1  VHS       VHS domain


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.1     3e-49   1.8e-45       2     124 ..      34     156 ..      33     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 3e-49
                 -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B-TT CS
        ENTH   2 seteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktlsefkyidee 100
                 se+e+kvr+atn++pwG+s++l++eia+ t++ ++++ei+  i+ r+ +++ ++wr+++KaL+l+eYL+knGse+v+d+++++is+ik+l++f+y+de+
  CDO72188.1  34 SEMEAKVRDATNDEPWGASSTLMQEIAQGTFNFQNFNEIMPAIYSRFMEKEARQWRQIYKALQLLEYLIKNGSERVVDDARSHISTIKMLRNFYYVDEK 132
                 89************************************************************************************************* PP

                 S-B-HHHHHHHHHHHHHHHT-HHH CS
        ENTH 101 gkdeglniRkkakkiislledeer 124
                 gkd+g+n+R++ak++++ll d e+
  CDO72188.1 133 GKDQGVNVRNRAKELVELLGDVEK 156
                 *******************99886 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.4e-08    0.0002       2     118 ..      36     151 ..      35     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.4e-08
                 HHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHC..TSS.SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHST CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrl..kltrnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsss 98 
                 +e+ v+ At+ +   +   +++ei  +t + +++++++ a+ +r   k++r+w + +KaL l+  l++ G+++v  ++ s+ ++i+ l n+       +
  CDO72188.1  36 MEAKVRDATNDEPWGASSTLMQEIAQGTFNFQNFNEIMPAIYSRFmeKEARQWRQIYKALQLLEYLIKNGSERVVDDARSHISTIKMLRNFYY---VDE 131
                 5678999999999999**************9************984456799***********************999999888888888766...457 PP

                 HHHHHHHHHHHHHHHHHHHH CS
        ANTH  99 kswdysafiraYakyLderl 118
                 k++d++ ++r+ ak L e l
  CDO72188.1 132 KGKDQGVNVRNRAKELVELL 151
                 89999999998776666555 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.061      55     117 ..      86     151 ..      38     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                 SSHHHHHHHHHHHHHHHHHSHHHH....HHHHTSHHHHHHHHHHHHCTTTCHCS.HHHHHHHHHHHH CS
         VHS  55 knphvallaLklldalvkNcGskf....hleiaskeflnelvklilekknsklakvkkkvlelleeW 117
                 ++   ++ aL+ll++l+kN+ +++    ++ i++ ++l +++  + ek +++  +v+++++el+e +
  CDO72188.1  86 RQWRQIYKALQLLEYLIKNGSERVvddaRSHISTIKMLRNFYY-VDEKGKDQGVNVRNRAKELVELL 151
                 45567899***************94444467999999999998.88888888889*****9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3641.61
//
Query:       CDO72189.1  [L=321]
Description: hypothetical protein BN946_scf184970.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00063   19.6   1.0     0.0007   19.5   0.1    1.4  2  DUF4515        Domain of unknown function (DUF4515)
     0.0011   19.2   0.2     0.0069   16.7   0.1    2.1  2  BLOC1_2        Biogenesis of lysosome-related organelles comp
      0.003   17.4   1.3      0.027   14.3   0.4    2.2  2  CdvA           CdvA-like coiled-coil domain
     0.0039   17.2   0.1     0.0069   16.4   0.1    1.4  1  DUF1664        Protein of unknown function (DUF1664)
     0.0097   16.3   0.0      0.018   15.5   0.0    1.5  1  NPV_P10        Nucleopolyhedrovirus P10 protein
  ------ inclusion threshold ------
      0.035   14.0   0.0      0.057   13.2   0.0    1.3  1  SKA1           Spindle and kinetochore-associated protein 1
      0.044   11.6   0.1      0.064   11.1   0.1    1.1  1  Myosin_tail_1  Myosin tail
      0.055   13.7   1.0          2    8.8   0.1    2.6  2  KxDL           Uncharacterized conserved protein
      0.058   13.8   4.0       0.23   11.8   4.0    2.1  1  CCDC53         Subunit CCDC53 of WASH complex
      0.061   13.8   0.1       0.13   12.8   0.1    1.5  1  DUF16          Protein of unknown function DUF16
      0.062   12.4   0.6      0.086   12.0   0.1    1.4  2  RmuC           RmuC family
      0.071   13.6   0.0       0.14   12.7   0.0    1.4  1  Spectrin       Spectrin repeat
      0.073   12.5   0.0       0.11   11.9   0.0    1.2  1  DUF1202        Protein of unknown function (DUF1202)
       0.11   12.8   0.4       0.21   11.9   0.4    1.4  1  DUF4164        Domain of unknown function (DUF4164)
       0.12   12.4   0.7       0.22   11.5   0.7    1.4  1  TMF_DNA_bd     TATA element modulatory factor 1 DNA binding
       0.15   10.9   0.2       0.24   10.2   0.2    1.2  1  Spc7           Spc7 kinetochore protein
       0.23   11.7   0.9       0.29   11.4   0.1    1.6  1  Ntox28         Bacterial toxin 28
       0.24   11.4   0.0       0.39   10.7   0.0    1.3  1  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.28   11.6   3.1        0.2   12.1   0.5    1.9  2  CLZ            C-terminal leucine zipper domain of cyclic nuc
       0.36   10.9   1.1       0.77    9.8   0.1    1.8  2  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
       0.39   11.1   3.1        1.4    9.4   0.7    2.5  3  FlaC_arch      Flagella accessory protein C (FlaC)
        0.4   10.6   2.3       0.48   10.4   0.4    1.9  2  Prefoldin_2    Prefoldin subunit
        2.3    8.3   8.8       0.11   12.5   3.2    1.8  2  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> DUF4515  Domain of unknown function (DUF4515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1     9e-07    0.0007      41     101 ..     107     168 ..      99     173 .. 0.90
   2 ?   -3.3   0.1       8.8   6.9e+03     106     119 ..     265     278 ..     259     284 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9e-07
     DUF4515  41 laskyekqtaeLqkqLlqkekeqaklkkeLqale.diaklkeqqerkiqtLeeekekvqaet 101
                 +++ +  + + +++qL ++ + ++ l+k  +ale  +++lke+++++++ Lee   k++++ 
  CDO72189.1 107 MKKDFVGRFNDINEQLGENYDGIKALEKSVKALEsSVSELKESVDKRVDGLEERFGKMERQL 168
                 567788899************************8459*********************9876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.8
     DUF4515 106 relklqfLkekaal 119
                 +++  q+L+ k++l
  CDO72189.1 265 KRMMKQLLRSKKDL 278
                 34444555555555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   8.8e-06    0.0069      48      88 ..     110     150 ..     101     162 .. 0.77
   2 ?    1.3   0.0      0.53   4.1e+02      70      93 ..     150     173 ..     148     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.8e-06
     BLOC1_2  48 kkleklnekyeelqpylqqidqiekqvteLeeavseLDeys 88 
                 +++ + n  +e+l ++ + i+++ek+v+ Le+ vseL e +
  CDO72189.1 110 DFVGRFNDINEQLGENYDGIKALEKSVKALESSVSELKESV 150
                 556777888999**********************9985433 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.53
     BLOC1_2  70 iekqvteLeeavseLDeyskeLEa 93 
                 ++k+v+ Lee   +++   +++Ea
  CDO72189.1 150 VDKRVDGLEERFGKMERQLRRIEA 173
                 677777777777777777777775 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   3.5e-05     0.027      25      63 ..     130     168 ..     114     174 .. 0.86
   2 ?    1.5   0.0      0.31   2.4e+02      83     112 ..     260     289 ..     258     299 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-05
        CdvA  25 ekleealkklkekakelkeklkkrlkeledqikslekal 63 
                 + le+++k+l+   +elke ++kr++ le+   ++e+ l
  CDO72189.1 130 KALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQL 168
                 579*******************************99987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.31
        CdvA  83 aieairellesaleekeeikklleklskle 112
                 ++ +++++++++l++k+++++  + l + e
  CDO72189.1 260 SKRSFKRMMKQLLRSKKDLDESFKYLFDEE 289
                 677899999999999999999999886555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   8.9e-06    0.0069      55     122 ..     102     166 ..      86     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.9e-06
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 e + + k+++  r + ++++l e+ + +k++++ v+++++ +se++e    v++ v gle++  ++e 
  CDO72189.1 102 EFVINMKKDFVGRFNDINEQLGENYDGIKALEKSVKALESSVSELKES---VDKRVDGLEERFGKMER 166
                 557789************************************999865...45566666666555553 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.4e-05     0.018      12      71 ..     128     181 ..     113     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.4e-05
     NPV_P10  12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnpdevP 71 
                  ika+++ V+al+++v +++e + +      ++d++ +   ++e ++  I+ +L + + P
  CDO72189.1 128 GIKALEKSVKALESSVSELKESVDK------RVDGLEERFGKMERQLRRIEALLGGRQNP 181
                 6999999999999999999998876......78888888888888888888888866555 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.4e-05     0.057      24     121 ..     128     225 ..     107     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  24 dlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeeaekakkpk 121
                  ++++e++v+ale+++++lk+ +++  + +++   ++e+ l++ e l   ++n  ++   ++++ + +  ++  +e e+++ + ++ +++a+++++p 
  CDO72189.1 128 GIKALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQLRRIEALLGGRQNPTPGTSASEDSDHGDGGSQHHSEAEDTAPQPQQAVQPAPAPTQPV 225
                 47899999***************999999999999999999888876666666666656555555555555555555555555555444444444443 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   8.2e-05     0.064     347     417 ..     104     171 ..      96     180 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.2e-05
  Myosin_tail_1 347 lqelrqkhtqaleelseqleqakrskaslekakqaLesenkelqaelkslqqakqdseqkrkkleaqlqel 417
                    + ++++     +++++eql +     ++lek+ +aLes ++el++ +    +     e++  k+e ql+ +
     CDO72189.1 104 VINMKKDFVGRFNDINEQLGENYDGIKALEKSVKALESSVSELKESVD---KRVDGLEERFGKMERQLRRI 171
                    556777777777777888877777777788888888887777776543...33333455555555555544 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.38     3e+02      31      61 ..     142     172 ..     126     176 .. 0.76
   2 ?    8.8   0.1    0.0026         2      43      69 ..     257     283 ..     252     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.38
        KxDL  31 eLlelnalsqerlaklrarfkqgtkllkevk 61 
                  ++el + +++r+  l++rf +  + l+++ 
  CDO72189.1 142 SVSELKESVDKRVDGLEERFGKMERQLRRIE 172
                 5677888888899999999988888887775 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0026
        KxDL  43 laklrarfkqgtkllkevkkdLesifk 69 
                  ++ +  fk+ +k l + kkdL+ +fk
  CDO72189.1 257 SSSSKRSFKRMMKQLLRSKKDLDESFK 283
                 5678899******************99 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.0    0.0003      0.23       3      86 ..     102     222 ..     100     277 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0003
      CCDC53   3 qfvistv.qfLNrFatecEekLvevekrlqrleitlalLEakLs....Sip....gleeveaeaaeastsddn.......................... 66 
                 +fvi++  +f  rF + +E+ L e  + ++ le +++ LE+  s    S++    glee             +                          
  CDO72189.1 102 EFVINMKkDFVGRFNDINEQ-LGENYDGIKALEKSVKALESSVSelkeSVDkrvdGLEERF-----------Gkmerqlrrieallggrqnptpgtsas 188
                 788887527999**999886.9999999999999999999765533345543222222222...........233345556778998777777777766 PP

      CCDC53  67 ...................aarkgppppppsseaaaaaa 86 
                                    a     p+p+++ ++a a++
  CDO72189.1 189 edsdhgdggsqhhseaedtA-----PQPQQAVQPAPAPT 222
                 65555555554333222210.....11111111111111 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00017      0.13      29      88 ..     108     171 ..      99     179 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00017
                 -..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHH CS
       DUF16  29 kdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln....kvdetleli 88 
                 k++   r+++i++++  +   i++le+ v++++  ++elk+ ++++ + l+    k+++ l+ i
  CDO72189.1 108 KKDFVGRFNDINEQLGENYDGIKALEKSVKALESSVSELKESVDKRVDGLEerfgKMERQLRRI 171
                 5556668889999999999999999999999999999999999887766665555666666655 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00011     0.086     229     284 ..     116     174 ..     108     180 .. 0.92
   2 ?   -3.9   0.0       7.7     6e+03     249     265 ..     264     280 ..     257     295 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
        RmuC 229 eeiaellgelydkfekfgedleklgkklekaqksydkavkkle...gnilrkaeklkel 284
                 ++i e+lge yd ++ +++++++l+++++++++s+dk v+ le   g++ r+++++++l
  CDO72189.1 116 NDINEQLGENYDGIKALEKSVKALESSVSELKESVDKRVDGLEerfGKMERQLRRIEAL 174
                 6899***************************************99999******99886 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.7
        RmuC 249 leklgkklekaqksydk 265
                 ++++ k+l +++k++d+
  CDO72189.1 264 FKRMMKQLLRSKKDLDE 280
                 33333444444443333 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00017      0.14      44     101 ..     116     173 ..     107     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  44 kaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkq 101
                  ++ ++l ++ + +kal++  ++l+++  + +e + +r+++l+er+ ++++++ + ++
  CDO72189.1 116 NDINEQLGENYDGIKALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQLRRIEA 173
                 566778888889999************9*********************999877665 PP

>> DUF1202  Protein of unknown function (DUF1202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.11     125     175 ..     101     151 ..      95     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
     DUF1202 125 dkylivnsedfnyrfsqleaalraqkasipalekelkaldkkivvakkead 175
                 d ++i   +df  rf++++  l  + + i alek +kal+  +   k + d
  CDO72189.1 101 DEFVINMKKDFVGRFNDINEQLGENYDGIKALEKSVKALESSVSELKESVD 151
                 567888899*******************************99987777666 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   0.00027      0.21       4      46 ..     130     173 ..     124     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
     DUF4164   4 keleaaltrLeaaldsLEkavdrrleaerkr.deleaeiealge 46 
                 k le+  + Le ++ +L ++vd+r++  ++r +++e++++++++
  CDO72189.1 130 KALEKSVKALESSVSELKESVDKRVDGLEERfGKMERQLRRIEA 173
                 45666677777777777777777777776666777777766654 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   0.00029      0.22      35      72 ..     129     170 ..     121     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
  TMF_DNA_bd  35 ikkLrkknkelekeikelk....kkleklekeleeleerlke 72 
                 ik L k +k le++++elk    k+++ le+ + ++e+ l++
  CDO72189.1 129 IKALEKSVKALESSVSELKesvdKRVDGLEERFGKMERQLRR 170
                 9*****************966666666666666666666665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00031      0.24     138     194 ..     116     172 ..     113     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00031
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeele 194
                 +++ e+l en++g+++ ++ +++ e+ ++el+++++++ + lee++ k++++ + +e
  CDO72189.1 116 NDINEQLGENYDGIKALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQLRRIE 172
                 678999999999999999999999999999999999999999999999998777766 PP

>> Ntox28  Bacterial toxin 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00038      0.29      54     102 ..     126     175 ..     104     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00038
      Ntox28  54 tdaqkGLenvrralekelenppdsdteR.evLerklkeavleLdrvedfl 102
                  d  k Le+  +ale ++ ++++s  +R + Le++  +  ++L+r+e +l
  CDO72189.1 126 YDGIKALEKSVKALESSVSELKESVDKRvDGLEERFGKMERQLRRIEALL 175
                 34556688888999999999999999999999999999999999999887 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0005      0.39      45     101 ..     113     168 ..      99     177 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0005
  Baculo_PEP_C  45 tqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssv 101
                   +++n+++e+l +    + ++l++++++L++++ +l+++++++ ++l+     +  ++
    CDO72189.1 113 GRFNDINEQLGENYDGI-KALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQL 168
                   56667777776655444.368888888888888888888888888877666655554 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   0.00025       0.2      22      70 ..     125     173 ..     114     174 .. 0.84
   2 ?   -1.1   0.1       3.3   2.6e+03      47      63 ..     264     280 ..     259     290 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
         CLZ  22 agaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkLEk 70 
                   +  k le+ v+ Less+  L+  + + ++ +e+   k+++ + ++E+
  CDO72189.1 125 NYDGIKALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQLRRIEA 173
                 44566899********************************999999985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.3
         CLZ  47 larLlaeyessqrkLkq 63 
                 ++r+++++  s++ L +
  CDO72189.1 264 FKRMMKQLLRSKKDLDE 280
                 56666666666555543 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00099      0.77      61     112 ..     117     168 ..     108     174 .. 0.72
   2 ?   -1.0   0.1       2.2   1.7e+03      97     122 ..     260     285 ..     255     288 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00099
  TPR_MLP1_2  61 alreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekri 112
                 +++e+l e  + i+ l++++++++++++e +es +++ + le++  ++e+++
  CDO72189.1 117 DINEQLGENYDGIKALEKSVKALESSVSELKESVDKRVDGLEERFGKMERQL 168
                 5667777777777777777777777777777777777777777777777655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.2
  TPR_MLP1_2  97 qkeelekelselekriedlneqNklL 122
                  k ++++ +++l +  +dl+e  k L
  CDO72189.1 260 SKRSFKRMMKQLLRSKKDLDESFKYL 285
                 45566666666666666666655555 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.7    0.0018       1.4       2      39 ..     115     152 ..     114     164 .. 0.79
   2 ?    2.2   0.0      0.31   2.4e+02       1      20 [.     153     172 ..     153     176 .. 0.87
   3 ?   -2.4   0.0       8.5   6.6e+03      17      40 ..     262     285 ..     256     287 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0018
   FlaC_arch   2 idelEnklsklsteletvkkeneelsksveelkenVkd 39 
                  +++ ++l++    ++ ++k+ + l++sv elke+V +
  CDO72189.1 115 FNDINEQLGENYDGIKALEKSVKALESSVSELKESVDK 152
                 57777888888888889999999999999999999843 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.31
   FlaC_arch   1 ridelEnklsklsteletvk 20 
                 r+d lE++++k++ +l  ++
  CDO72189.1 153 RVDGLEERFGKMERQLRRIE 172
                 8999********99998776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.5
   FlaC_arch  17 etvkkeneelsksveelkenVkdl 40 
                  + k+ +++l  s ++l+e++k l
  CDO72189.1 262 RSFKRMMKQLLRSKKDLDESFKYL 285
                 566777777777778888887765 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00061      0.48      58      96 ..     134     172 ..     131     179 .. 0.72
   2 ?   -3.0   0.0         9     7e+03      89     100 ..     268     279 ..     258     286 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00061
                  E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  58 qdkeevkeeLeerketlekeiktlekqleklekeleelk 96 
                  ++++ +++ + e ke+++k+++ le++  k+e++l+ ++
   CDO72189.1 134 KSVKALESSVSELKESVDKRVDGLEERFGKMERQLRRIE 172
                  667777777777777777777777777777777776655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9
                  HHHHHHHHHHHH CS
  Prefoldin_2  89 ekeleelkeelq 100
                   k+l   k+ l 
   CDO72189.1 268 MKQLLRSKKDLD 279
                  222222222222 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       5.3   4.1e+03     177     199 ..      43      67 ..      12      89 .. 0.50
   2 ?   12.5   3.2   0.00014      0.11     159     214 ..     206     263 ..     127     285 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.3
  Mito_fiss_reg 177 s..lppppppppppippespsvlds 199
                    +  ++p  p +p  ++   p++lds
     CDO72189.1  43 VslFSPANPTKPFNMTTVEPQGLDS 67 
                    1234455554444433333333333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00014
  Mito_fiss_reg 159 dllepksssaspslep...sss.lppppppppppi..ppespsvldssnsaielikqrrgak 214
                    d + p++++a     p   +++ + pp ppp pp+   p++++v+++s s+  l   +++ +
     CDO72189.1 206 D-TAPQPQQAVQ---PapaPTQpVQPPQPPPIPPThlAPPTAPVIHTSVSSPSLRSSSSKRS 263
                    1.1111111111...11122221224545455552454455566666666655555444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      991  (0.0552736); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 2039.20
//
Query:       CDO72190.1  [L=821]
Description: hypothetical protein BN946_scf184970.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.48   10.1   5.9        1.2    8.8   0.2    3.3  3  PTCRA     Pre-T-cell antigen receptor


Domain annotation for each model (and alignments):
>> PTCRA  Pre-T-cell antigen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1    0.0055        99      51      76 ..     180     205 ..     175     212 .. 0.84
   2 ?    8.8   0.2   6.9e-05       1.2      59     110 ..     290     340 ..     249     356 .. 0.80
   3 ?   -1.9   0.1      0.14   2.5e+03      87     118 ..     496     528 ..     471     536 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0055
       PTCRA  51 aldaftyGpspaadGtwtslaqlslp 76 
                 + d+  yGps ++   w s+++l+ +
  CDO72190.1 180 SRDSTVYGPSSSNADDWLSMSNLAST 205
                 568999*************9999755 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 6.9e-05
       PTCRA  59 pspaadGtwtslaqlslpseelaaweplvchtgpgageksrstqplqlsgea 110
                 p  + d t ++++qls+++   +a++  v h +p++ +++    p q   +a
  CDO72190.1 290 PE-SGDLTRSRMGQLSVSTRPATAFDGTVTHFEPQQFTHDGMVSPTQSEQHA 340
                 33.468999**************************99999888888855433 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.14
       PTCRA  87 vchtgpgageksrstqplqlsg.easaartlpa 118
                 +  ++pg++ + rs +  qls   + +a+t ++
  CDO72190.1 496 IAASRPGSHIRVRSRRSSQLSEpSTPTASTSKE 528
                 456899999999999999999944444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5323.85
//
Query:       CDO72191.1  [L=209]
Description: hypothetical protein BN946_scf184970.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-22   79.3   0.3    2.9e-22   79.3   0.3    1.4  2  RNA_pol_Rpb4  RNA polymerase Rpb4
  ------ inclusion threshold ------
      0.023   14.9   0.3      0.036   14.2   0.3    1.3  1  p25-alpha     p25-alpha
       0.12   11.3   0.5       0.13   11.2   0.5    1.1  1  Miga          Mitoguardin
       0.71   10.3   3.8       0.41   11.0   1.5    1.7  2  Nnf1          Nnf1


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.3   6.6e-26   2.9e-22       1     120 [.      10     141 ..      10     144 .. 0.86
   2 ?   -3.5   0.1       2.7   1.2e+04      47      48 ..     167     168 ..     151     185 .. 0.49

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 6.6e-26
                   EE-HHHHHHHHHHHHHHHHCHHHHHTC.....CCC.........CHHSHCHTCHHCHHHHHHHHHHHC..THHTTSSHHHHHHHHHHHTTSTSTHHH CS
  RNA_pol_Rpb4   1 lLsnsEvllvlkeeleerknkdkkese.....ddk.........isekeevkgnlnkilkktleyltn..kfsrlkneekfnelvellksfeLtkaE 81 
                   lLsn+Evl +lk ele  +   +k+ +     + +         ++  ++v++nl+++  ++++yl+   ++ +l++ee +++l ++l + +LtkaE
    CDO72191.1  10 LLSNYEVLTLLK-ELESDHLARTKT-AirikkE-EeaaglppkhQAPPDDVCENLRTVEVEAIQYLSAdyQPTALQSEEGIAQLTRTLGQWDLTKAE 103
                   69**********.888887765544.3478751.1456777766788899*****************8677889999999***************** PP

                   HHHHHHCSTSSHHHHHHHSTTGTTTSTSHHHHHHHHHHH CS
  RNA_pol_Rpb4  82 klqlvnlkPesavelktlieeleerfedeqleeiLdelk 120
                   klq+vnl+P++ vel++++eele rf d ++++iL+ +k
    CDO72191.1 104 KLQIVNLAPTEPVELYVIVEELEDRFGD-KMDDILNAVK 141
                   **************************86.7999999987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
                   HH CS
  RNA_pol_Rpb4  47 kt 48 
                   +t
    CDO72191.1 167 ET 168
                   22 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3     8e-06     0.036      71     145 ..     124     208 ..     117     209 .] 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8e-06
   p25-alpha  71 laekkfkkkkkeeeleliekliegkgPklqgvtkatkagavdrltDts..kYTGshke.........rfDesgkgkglagredred 145
                   e++f +k+++     ++  +++++P+++g+t+ ++a++  +   t+  +YT  + e          fD++g+g g++g  d++d
  CDO72191.1 124 ELEDRFGDKMDDILN-AVKSSLKEASPTMNGTTENQAAEESMQVETTTyvEYTEEYTEqwgydanevVFDDTGEGAGVEGDLDVDD 208
                 456668666666666.4555555555*****9998888877766444323788888889999**9***************999976 PP

>> Miga  Mitoguardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   2.8e-05      0.13     118     203 ..      92     176 ..      21     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
        Miga 118 aansaswdkeeeeelklenitvltpenlylmGmelleealrrweqaLtvrsrqaedeascssvklgagdaiaeeevedvksaefie 203
                  +   +wd ++ e+l+++n+++++p +ly+   el +    ++++ L++++++ ++++ +++ ++++ +a+++ +ve+++  e++e
  CDO72191.1  92 RT-LGQWDLTKAEKLQIVNLAPTEPVELYVIVEELEDRFGDKMDDILNAVKSSLKEASPTMNGTTENQAAEESMQVETTTYVEYTE 176
                 22.568**************************999999999*********999988888888888888888888887777666655 PP

>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.5   9.2e-05      0.41      23     106 ..       8      91 ..       2      93 .. 0.77
   2 ?   -1.9   0.0      0.96   4.3e+03      80      80 ..     144     144 ..     121     170 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.2e-05
                 HHHHHHTTHHHHHHHHH..HHHHHHHCCHH-T..........TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  23 eeIleerdvvekLneLD..dlieeAkerreegeeeasrpevpphtLpPeeliaahlapakkeeqeeLearlqeleaenaelaeeve 106
                 +++l + +v   L eL+   l++  +  r ++eeea  +  pp+  +P ++++ +l++   e+ + L a +q +  + +e   +++
  CDO72191.1   8 SALLSNYEVLTLLKELEsdHLARTKTAIRIKKEEEA--AGLPPKHQAPPDDVCENLRTVEVEAIQYLSADYQPTALQSEEGIAQLT 91 
                 578889999999999986566665554444433333..347899999*************************99988888777765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.96
                 H CS
        Nnf1  80 k 80 
                 +
  CDO72191.1 144 L 144
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1494.10
//
Query:       CDO72192.1  [L=611]
Description: hypothetical protein BN946_scf184970.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-32  110.2   0.6    7.6e-32  110.2   0.6    2.2  2  NOT2_3_5  NOT2 / NOT3 / NOT5 family


Domain annotation for each model (and alignments):
>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.6       0.4   7.2e+03      13      13 ..     336     336 ..     286     382 .. 0.60
   2 !  110.2   0.6   4.2e-36   7.6e-32       2     131 .]     446     568 ..     445     568 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.4
    NOT2_3_5  13 e 13 
                 +
  CDO72192.1 336 H 336
                 0 PP

  == domain 2  score: 110.2 bits;  conditional E-value: 4.2e-36
    NOT2_3_5   2 sllnspdsedaekprqyep..klphptsisypqeplyeklesakklekldedtLFyiFYysqgtleqllAakeLkkrsWryhkelktWflreekeepke 98 
                 s++ +p++++++ + ++ep  +lp++    y+ +p      s++k+  ++++tLF++FY s+++  q++Aa+eL++r+Wryhkel++W+++e++++p++
  CDO72192.1 446 STFITPWADSSAAH-TVEPdfHLPAC----YNVQPP---PPSPNKVAVFSDETLFFMFYASPRDALQEIAAQELYNRNWRYHKELRLWITKESGTQPSQ 536
                 78999***999666.89998999999....*99984...67999************************************************999**** PP

    NOT2_3_5  99 kteeyekgsYkyFDyetWlkrrkkdfkleyekL 131
                 k +  e+g+Y y+D + W+k r k++++ y++L
  CDO72192.1 537 KVPGGEQGTYSYWDPDMWEKSR-KEMTVLYADL 568
                 **************669*****.7888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4141.65
//
Query:       CDO72193.1  [L=550]
Description: hypothetical protein BN946_scf184970.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-61  206.4   0.0    5.2e-37  127.9   0.0    3.0  2  COesterase      Carboxylesterase family
  ------ inclusion threshold ------
       0.17   10.3   0.0       0.28    9.6   0.0    1.3  1  Hydantoinase_B  Hydantoinase B/oxoprolinase


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   3.4e-24     3e-20       2     108 ..      26     140 ..      25     142 .. 0.90
   2 !  127.9   0.0   5.8e-41   5.2e-37     167     497 ..     208     522 ..     207     535 .. 0.82

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 3.4e-24
                 SSEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHH..............BES- CS
  COesterase   2 spvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleaw..............vsED 86 
                 +p+v++ +G+  G +       + + FlGiP++++Pvg+lRF+ P++ +p++g+   t+f+p+Cpq+a + + +++ +                  +ED
  CDO72193.1  26 APTVQLDQGTFIGATDG-----TLNKFLGIPFGKAPVGDLRFNLPVAVDPYNGTHTVTSFGPSCPQQAVNFNFPSQLEADAvnyiinsiyqivfpAQED 119
                 57899999999999888.....8899******************************************999888877666689**************** PP

                 --EEEEEEESSSSSTTSSEEEE CS
  COesterase  87 CLyLnvytPkekkeakkklPVl 108
                 CL Lnv +P+ + + + +lPV+
  CDO72193.1 120 CLNLNVIVPAGT-KPNANLPVV 140
                 **********97.566666*97 PP

  == domain 2  score: 127.9 bits;  conditional E-value: 5.8e-41
                 HHHHHHHHHHGGGGTEEEEEEEE.EEETHHHHHHHHHHHS..GGGTTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-H CS
  COesterase 167 vlALrWVkenIasFGGdpervtl.fGesAGaasvslllls..plsrglfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksa 262
                 +lALrW+++ I++FGGdp +vt  +G   Ga sv+l+l++    s+glf+ a +qSGs++    i++  +   ++l +++gc  s ++++++clr+ ++
  CDO72193.1 208 RLALRWIQKYISAFGGDPTKVTMcMGRERGAISVALHLITngGNSEGLFRGAFMQSGSPIPVGDITH-GQADYDTLVSETGC--SGAADTLQCLRQVPY 303
                 68********************758***************444677************998888887.666778999*****..8999*********** PP

                 HHHHHCCGG..SSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCC..HH CS
  COesterase 263 eelldaqek..aleasssklvsfaPvvdgdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaek..ke 355
                 ++l +a     ++  ++s ++++ P vdg+fl+++P++l+++ +  +vp ++G  +deg+lf   +l+   +++++ +++ +s++  ++ +++++    
  CDO72193.1 304 DKLKKAVDAspGIFSPNSLRLTWLPRVDGKFLTDTPQNLVQQGSvaNVPFVTGDCDDEGTLFSLSTLNI--TTEEELRSYVTSNYLPQAENKNVDqlF- 399
                 *******99999999***************************77********************88876..344444444444444433333333441. PP

                 HHHHHHHHHHS.........TTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSG CS
  COesterase 356 elseaikeeyt.........deadrddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllek 445
                        + y          d+   +     +k+l+++ +d +f+ap + +++++ s +++++ +  +  +      +  g++h++++  +fg   l  
  CDO72193.1 400 -------TLYPaditqgspfDTGVLNALTPQYKRLAAMQGDLVFQAPRRYFLQHR-SDKQSTWSFLSKRLK----GLPDLGSAHATDILNIFGGGEL-- 484
                 .......222222223334556667777778889999***************999.888899988875443....44579*************8876.. PP

                 CSS-HHHHHHHHHHHHHHHHHHHHSSTTSTTSS----B.TTTBEEEEESSSS CS
  COesterase 446 eeftkedeklsrkmmtywtnFaktgnPnkeeeekWpkytkeeekylkinlkp 497
                                +y+ nFa++ +Pn+++ ++Wpky++++ k+l+++ + 
  CDO72193.1 485 --------------ADYLINFANNLDPNGNTVPSWPKYSASSPKLLTFTDDV 522
                 ..............578*****************************999876 PP

>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   3.1e-05      0.28     244     326 ..      64     144 ..      34     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3.1e-05
  Hydantoinase_B 244 ikvtv.tidgdeatvDftgtspqvkgniNaplavtlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnv 326
                     + v+v   +g++ +  f  + pq + n+N+p +    av y+++++ +  +p  e cl+ ++v++p g+  n++   +vv+  +
      CDO72193.1  64 LPVAVdPYNGTHTVTSFGPSCPQQAVNFNFPSQLEADAVNYIINSIYQIVFPAQEDCLN-LNVIVPAGTKPNAN--LPVVARDW 144
                     445563367888999********************************9999******97.7999****966665..55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3998.39
//
Query:       CDO72194.1  [L=553]
Description: hypothetical protein BN946_scf184970.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-76  255.7   2.5    1.4e-56  192.0   0.1    2.0  2  TrkH      Cation transport protein


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.5   6.1e-22   1.1e-17     110     239 ..      85     218 ..      73     233 .. 0.91
   2 !  192.0   0.1   7.9e-61   1.4e-56     292     499 ..     241     462 ..     238     465 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 6.1e-22
        TrkH 110 laylsl.ptlgrgsaflylseaqkeelggkelrslselikilvvyyvgleilafvllvvliytakaysev....vdstgvsplwwaffhsmSafnnlGf 203
                 ++yls+ +t++r+s f++l+  + eelgg+e+r+l +l+ i+ vyy+gl  ++f++  + + + k ++      ++ ++++ +w  +f  m a  n G+
  CDO72194.1  85 VPYLSFsATVKRNSSFYGLTADNIEELGGVEYRALCSLSWIIPVYYFGLLGVSFIVTAPYMTLPK-WQVNfhppLQHKDINAIWFSAFQIMGAWANTGM 182
                 68***********************************************9999999988887766.55545666************************* PP

        TrkH 204 sltpnSlasfnknivillvaiifiilGnigFpillr 239
                 sl ++ +++f++++ + +++ii +++Gn++ pi+ +
  CDO72194.1 183 SLVDQNMVPFQTAYPMVIFIIICVLAGNTALPIFGS 218
                 ************9999999**************866 PP

  == domain 2  score: 192.0 bits;  conditional E-value: 7.9e-61
        TrkH 292 tdnilfilldegslvvksipkgsrvlkalFqsvstrtaGFsvvdlsnlhpaikvllvlmmyigglpgStaggIrrtnvyeefslgkyeieqekepkav. 389
                 t+ ++  +ld g+ + +s+p g ++++a++ +++ r aG++ +++s+l pa++vl v+mmyi   p  +a+++r+tnvyee sl++ye+e+e+++  + 
  CDO72194.1 241 TNLFFYLILDIGNPATESLPFGVKFIDAILDAAACRNAGYQPIPISSLMPAVQVLSVIMMYIAIFP--IAMSVRATNVYEEKSLLIYESESEEDE--Ln 335
                 56678899**********************************************************..*******************99988774..23 PP

        TrkH 390 ..........skksidg....khlerqllvdlwslflvlliilileglklsdvqepd.fsffdiLfevvSaygtvGLSlG.a.knaslsaqlttisklv 471
                           s++ i g    +h +rql++d+w l++ l++++i+e   l+d ++ + fs+f++Lfe vSaygtvGLSlG + +n sls  + t+sklv
  CDO72194.1 336 ddthwntpseSRVAIWGryllRHTRRQLSFDMWWLAVSLFLLCIIERSNLTDPAKLSyFSIFALLFELVSAYGTVGLSLGiPgANYSLSGGMHTLSKLV 434
                 4678999999667676622226789****************************996549**************************************** PP

        TrkH 472 lialmirGrlrglpvlldraillpsdkl 499
                 ++a+m+rGr+rglpv+ldra+l+ps++l
  CDO72194.1 435 ICAVMLRGRHRGLPVALDRAVLMPSEFL 462
                 *************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3704.14
//
Query:       CDO72195.1  [L=909]
Description: hypothetical protein BN946_scf184970.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00013   22.6   0.2        1.7    9.6   0.0    4.3  3  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.096   12.2   0.6        8.4    5.9   0.0    2.6  2  PQQ_2        PQQ-like domain
       0.15   12.4   0.1        7.4    7.0   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.18   1.1e+03       2      27 ..     133     160 ..     132     168 .. 0.67
   2 !    6.5   0.0    0.0027        16      22      38 .]     346     363 ..     328     363 .. 0.69
   3 !    9.6   0.0   0.00028       1.7       4      37 ..     823     858 ..     820     859 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.18
                 EEEEEEESS.SS..EEEEEEETTSSEEEE CS
        WD40   2 qclrtltGH.ss..vtslafspdgawlas 27 
                 +++r l++H ++  v+ +a+s d  ++ s
  CDO72195.1 133 EPVRGLRAHdGDtdVHLCAWSADELLV-S 160
                 5788999**744679555599887775.3 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0027
                 SSEEEEE.ETTSEEEEEE CS
        WD40  22 gawlasG.sdDgtvriWd 38 
                    l+ G  dDgt+ iW+
  CDO72195.1 346 AERLLVGgADDGTIAIWS 363
                 4445445269*******5 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00028
                 EEEEESS.SSEEEEEEETTSSEEEEEE.TTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGs.dDgtvriW 37 
                 l++l+GH +  t+++fspdg+ l++ s +   v +W
  CDO72195.1 823 LYVLEGHkKRTTACSFSPDGRRLVTLSlEESVVLVW 858
                 7899***8889***********98734356666666 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2    0.0057        34     112     158 ..     215     263 ..     189     280 .. 0.68
   2 ?    5.9   0.0    0.0014       8.4     108     144 ..     782     822 ..     775     857 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0057
       PQQ_2 112 lrssaspava..gdtvvvgessgklvaldpkdGkvlWerelaaprgtse 158
                 l ++ + +++  +  v++ + +g +v  ++k+G+++ ++++ +++ +++
  CDO72195.1 215 LQPKVAQTIVlsSYDVAALTLGGHVVSTRVKNGRRRIHHTSVDASDSVA 263
                 4444444444556677777889999999999999988887744444443 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0014
       PQQ_2 108 epaelrssaspava....gdtvvvgessgklvaldpkdGkv 144
                 e +++++++ p+v+    +++++vg+s g +v++d+k+  +
  CDO72195.1 782 EILSHIVQTFPTVDfhmgSQRLAVGTSEGAVVMYDLKTATR 822
                 777889999999999999******************99665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   5.9e+03      35      61 ..     141     166 ..     135     170 .. 0.72
   2 ?    0.5   0.0      0.13   7.8e+02      48      69 ..     345     366 ..     340     379 .. 0.86
   3 ?    7.0   0.0    0.0012       7.4      45      82 ..     795     832 ..     789     858 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdge 61 
                  ++ d  v+  aW+ d+ lL+ +++dg 
   CDO72195.1 141 HDGDTDVHLCAWSADE-LLVSVWHDGI 166
                  5667788888998775.7777788876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaes 69 
                    ++lL+ + +dg++ + + es
   CDO72195.1 345 SAERLLVGGADDGTIAIWSLES 366
                  56899999*********99987 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                   +++  + Lav++s+g+v ++d ++++ +  l+ ++++
   CDO72195.1 795 DFHMGSQRLAVGTSEGAVVMYDLKTATRLYVLEGHKKR 832
                  567778899************99999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 6262.73
//
Query:       CDO72196.1  [L=275]
Description: hypothetical protein BN946_scf184970.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1929.50
//
Query:       CDO72197.1  [L=364]
Description: hypothetical protein BN946_scf184970.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-39  134.8   0.0    4.2e-39  134.0   0.0    1.4  1  AAA              ATPase family associated with various cellul
      2e-10   40.3   0.0    5.2e-10   39.0   0.0    1.8  1  AAA_lid_3        AAA+ lid domain
    6.2e-07   29.3   0.0    1.3e-06   28.2   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    2.8e-05   24.6   0.1    0.00096   19.6   0.0    2.5  2  AAA_16           AAA ATPase domain
    3.8e-05   23.9   0.0    6.9e-05   23.0   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
    4.9e-05   23.4   0.0    9.9e-05   22.4   0.0    1.6  1  AAA_14           AAA domain
    8.9e-05   22.5   0.5     0.0013   18.7   0.5    2.6  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0001   22.6   0.1      0.003   17.8   0.0    2.4  2  AAA_22           AAA domain
    0.00018   22.1   0.0    0.00037   21.0   0.0    1.5  1  AAA_18           AAA domain
    0.00036   20.5   0.1    0.00097   19.1   0.0    1.6  1  Rad17            Rad17 P-loop domain
    0.00036   20.0   0.2     0.0019   17.6   0.2    1.9  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00045   20.4   0.0    0.00077   19.6   0.0    1.4  1  AAA_33           AAA domain
    0.00055   20.2   0.1     0.0038   17.5   0.0    2.2  2  AAA_28           AAA domain
    0.00059   19.6   0.0     0.0011   18.8   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.003   17.0   0.1        1.8    8.0   0.0    2.8  3  TniB             Bacterial TniB protein
     0.0035   17.7   0.0     0.0072   16.7   0.0    1.6  1  RNA_helicase     RNA helicase
     0.0043   16.3   0.1     0.0069   15.6   0.1    1.3  1  TIP49            TIP49 P-loop domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.019   15.1   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.011   15.3   0.2      0.043   13.3   0.0    2.1  1  AAA_7            P-loop containing dynein motor region
      0.012   14.9   0.1      0.024   13.9   0.1    1.4  1  Zeta_toxin       Zeta toxin
      0.012   15.2   0.2       0.16   11.5   0.2    2.2  2  AAA_25           AAA domain
      0.014   15.8   0.0      0.032   14.7   0.0    1.7  1  AAA_17           AAA domain
      0.017   14.9   0.1      0.028   14.2   0.1    1.5  1  AAA_24           AAA domain
       0.02   15.4   0.0      0.066   13.7   0.0    1.7  1  ABC_tran         ABC transporter
      0.021   14.8   0.1      0.046   13.6   0.1    1.6  1  NACHT            NACHT domain
      0.026   14.3   0.0      0.048   13.4   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.032   14.2   0.0      0.087   12.8   0.0    1.7  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.044   13.1   0.0        1.6    8.0   0.0    2.8  3  ATPase           KaiC
      0.048   13.9   0.1        0.5   10.6   0.0    2.1  2  Hydin_ADK        Hydin Adenylate kinase-like domain
      0.065   12.9   0.0       0.23   11.2   0.0    1.8  1  Sigma54_activat  Sigma-54 interaction domain
      0.075   12.9   0.0       0.16   11.8   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
        0.1   11.7   0.0       0.19   10.8   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.14   12.3   0.0       0.25   11.4   0.0    1.3  1  tRNA_lig_kinase  tRNA ligase kinase domain
       0.14   12.3   0.0       0.33   11.1   0.0    1.6  1  SKI              Shikimate kinase
       0.15   12.0   0.0        0.8    9.6   0.0    2.0  2  ATPase_2         ATPase domain predominantly from Archaea
       0.17   11.7   0.0       0.28   10.9   0.0    1.3  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.18   10.9   0.0       0.31   10.2   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
       0.19   11.4   0.0        0.8    9.4   0.0    2.1  2  Guanylate_kin    Guanylate kinase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.0   8.9e-42   4.2e-39       1     131 [.     139     267 ..     139     268 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 8.9e-42
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+GppG+GKT+laka+ake+g++f++i +s l++k+ ges+k +++lf+ a++ + psi+fiDEid++ ++r+++++e++  + ++++t +dg++++
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNKWYGESNKLVAGLFSLARKTQ-PSIVFIDEIDSFLRERTKGDHEVTGMMKAEFMTLWDGLTSS 236
                 79******************************************************9.***************************************** PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkieie 131
                 +++++v+gatnrp+++d+a+l +R+ +++ i+
  CDO72197.1 237 TDRILVLGATNRPNDIDSAIL-RRMPKRFAIG 267
                 *********************.7****99886 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.1e-12   5.2e-10       2      39 ..     291     328 ..     290     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.1e-12
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeit 39 
                 +++ +LAe+ +G SG Dl++lcr+Aa++ +r+ + e++
  CDO72197.1 291 FSIRALAEKADGLSGSDLKELCRNAAMRPMREYMREVG 328
                 57899****************************99986 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.8e-09   1.3e-06      35      96 ..     138     207 ..     130     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.8e-09
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvlek.....agdlaalltnleek...dvlfideihrl 96 
                  vll+GpPG Gkt lak +ake g+++   ++ vl +     ++ l+a l +l +k    ++fidei  +
  CDO72197.1 138 GVLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNkwygeSNKLVAGLFSLARKtqpSIVFIDEIDSF 207
                 59************************9999999987522222567988888886542337*******765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     2e-06   0.00096      22      56 ..     134     165 ..     125     178 .. 0.80
   2 ?    2.3   0.0      0.41   1.9e+02     122     147 ..     183     207 ..     178     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggifl 56 
                 g p  vll G++G+GK+ l+++l+++     + f+
  CDO72197.1 134 GAPKGVLLFGPPGCGKTMLAKALAKESG---ATFI 165
                 7899*******************98544...4454 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.41
      AAA_16 122 llkrllallsrderplvlvlDdlqwa 147
                 l++ l++l+++  +p ++++D+++ +
  CDO72197.1 183 LVAGLFSLARK-TQPSIVFIDEIDSF 207
                 55667788888.777********965 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.5e-07   6.9e-05       6      83 ..     139     210 ..     135     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.5e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG---- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk 83 
                 +ll gp g+Gkt+lakala+   +    ++i + as l+     e+++lv+ l        ++ +  iv++DEid   ++
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGA----TFINIAASVLTNkwYGESNKLVAGLF----SLARKTQPSIVFIDEIDSFLRE 210
                 4677******************96....************55555666666655....566788999********87775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.1e-07   9.9e-05       4      75 ..     138     206 ..     135     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.1e-07
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                  +++ G+  +GKT+l+k l+ke+      ++ i+    ++k + +++kl   +++++++ + +++f+DEi  
  CDO72197.1 138 GVLLFGPPGCGKTMLAKALAKESG---ATFINIAASVLTNKWYGESNKLVAGLFSLARKTQPSIVFIDEIDS 206
                 57899*****************99...89999999988888888888899999998666699********76 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.5   2.8e-06    0.0013       1      27 [.     138     164 ..     138     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.8e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnrev 27 
                 +vlL GppG+gK++la+ la+  ++++
  CDO72197.1 138 GVLLFGPPGCGKTMLAKALAKESGATF 164
                 59*****************98665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.4e-06     0.003       8      48 ..     139     170 ..     135     187 .. 0.80
   2 ?    2.0   0.0      0.51   2.4e+02      86     105 ..     191     211 ..     172     246 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.4e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48 
                 ++++G++G+GKT+l++ l+++          +++++ + ++
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKES---------GATFINIAAS 170
                 589***************9987.........5555555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.51
      AAA_22  86 lraravielliiDEaqh.lr.s 105
                 +r+++  +++ iDE++  lr +
  CDO72197.1 191 ARKTQP-SIVFIDEIDSfLReR 211
                 445555.99*******966551 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.8e-07   0.00037       1      25 [.     139     184 ..     139     231 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.8e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....................g 25 
                 +ll G+pG+GKt lak+L+k+ g                      +
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGAtfiniaasvltnkwygesnklV 184
                 799****************997445444444444444433333333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.1e-06   0.00097      43      80 ..     135     171 ..     125     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.1e-06
       Rad17  43 rkkriLLisGPsGCgkstvvkvLskelgiklrewlnpv 80 
                 ++k + L+ GP+GCgk+   k L+ke g  +++   +v
  CDO72197.1 135 APKGV-LLFGPPGCGKTMLAKALAKESGATFINIAASV 171
                 55555.567*******************9988766555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2     4e-06    0.0019      25      43 ..     139     157 ..     133     159 .. 0.90
   2 ?   -0.7   0.0       1.6   7.6e+02      92     120 ..     178     209 ..     159     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4e-06
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtmlak+l+
    CDO72197.1 139 VLLFGPPGCGKTMLAKALA 157
                   89**************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
  Mg_chelatase  92 GggskpkpGeislahn...GvLfLDElpefkr 120
                   G ++k   G  sla++    ++f+DE+  f r
    CDO72197.1 178 GESNKLVAGLFSLARKtqpSIVFIDEIDSFLR 209
                   667788888889987633369******99976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.6e-06   0.00077       2      29 ..     139     166 ..     139     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.6e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavlls 29 
                 vll G+pG+GK+ la+ l+k+ ga++++
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGATFIN 166
                 7899*******************76665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0         2   9.6e+02     130     151 ..      54      75 ..      43     110 .. 0.82
   2 !   17.5   0.0     8e-06    0.0038       2      39 ..     139     176 ..     138     194 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2
      AAA_28 130 dleereaiderlrealrelgip 151
                 +++er++++++ ++al+ lg++
  CDO72197.1  54 SPHERKEVKQKSLKALESLGHR 75 
                 7888888888888888888875 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 8e-06
      AAA_28   2 ivitGgestGKTtlleaLaargypvvpEaareileekl 39 
                 + ++G++++GKT l++aLa++   ++  +a  +l++k+
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNKW 176
                 6799***************9866666666666666665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-06    0.0011      40      71 ..     129     160 ..     119     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-06
   IstB_IS21  40 tlsfiekkenivllGpsGvGKshlaialgvea 71 
                 + s + + ++++l+Gp+G GK+ la al++e 
  CDO72197.1 129 SSSLLGAPKGVLLFGPPGCGKTMLAKALAKES 160
                 5667788899******************9875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.9   1.4e+03     103     132 ..      57      86 ..      47      92 .. 0.79
   2 !    8.0   0.0    0.0038       1.8      36      60 ..     137     161 ..     125     172 .. 0.86
   3 ?    5.7   0.0     0.018       8.6     106     147 ..     182     223 ..     165     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.9
        TniB 103 rvskleqqvlrllrelkvrvLiiDEihnll 132
                 + ++ +q+ l+ l++l+ r L +DE +  +
  CDO72197.1  57 ERKEVKQKSLKALESLGHRDLKLDEYEAQI 86 
                 456788899999999999999999987665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0038
        TniB  36 pnlllvGdsnnGKtmivekFarlhp 60 
                 + +ll+G++ +GKtm+++  a++  
  CDO72197.1 137 KGVLLFGPPGCGKTMLAKALAKESG 161
                 689**************99888765 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.018
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalk 147
                 kl +   +l r++++ ++ iDEi+++l+ + +  +e++ ++k
  CDO72197.1 182 KLVAGLFSLARKTQPSIVFIDEIDSFLRERTKGDHEVTGMMK 223
                 55666778899****************999999988888877 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-05    0.0072       1      26 [.     139     164 ..     139     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++l+Gp+g+GK++lak Lak+   ++
    CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGATF 164
                   689****************9987666 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.5e-05    0.0069      50      87 ..     136     171 ..     126     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgse 87 
                  ++vLl Gp+g Gkt la a++ke g    f+ +++s 
  CDO72197.1 136 PKGVLLFGPPGCGKTMLAKALAKESG--ATFINIAASV 171
                 599*********************88..6788888875 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     4e-05     0.019      22      84 ..     137     210 ..     130     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4e-05
                      S-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.............HHHHHHTTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  22 lpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.............ldlleqakggtLylkdiadlska 84 
                        v+l G++G+gk++ A++L+k+sg      +++ ++  +              +l  + ++ + ++ +i+++ ++
       CDO72197.1 137 KGVLLFGPPGCGKTMLAKALAKESGA--TFINIAASVLTNkwygesnklvaglFSLARKTQPSIVFIDEIDSFLRE 210
                      569*******************9998..444454555444456666677777677777788889999998888666 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.2e-05     0.043      27      58 ..     130     161 ..     125     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.2e-05
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkld 58 
                 + ll + k vll Gp G+GKt+++k l k+  
  CDO72197.1 130 SSLLGAPKGVLLFGPPGCGKTMLAKALAKESG 161
                 567888899****************9988766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1     5e-05     0.024      15      48 ..     135     166 ..     125     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5e-05
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvvr 48 
                  Pk +ll G pG+GK+ la++l++e   +  ++ 
  CDO72197.1 135 APKGVLLFGPPGCGKTMLAKALAKES--GATFIN 166
                 799*********************98..555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00034      0.16      36      54 ..     139     157 ..     130     160 .. 0.86
   2 ?    1.0   0.0      0.59   2.8e+02     132     170 ..     186     223 ..     175     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00034
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pg+GKt+la  la
  CDO72197.1 139 VLLFGPPGCGKTMLAKALA 157
                 79************98877 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.59
      AAA_25 132 aleaaieevegvrlvviDplsralggdensnsdvgalve 170
                  l   +++  ++  v iD ++++l+   + +++v+ +++
  CDO72197.1 186 GLFSLARK-TQPSIVFIDEIDSFLRERTKGDHEVTGMMK 223
                 55556667.5799************99999999865554 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.7e-05     0.032       1      26 [.     142     167 ..     142     228 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.7e-05
                 EE-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa 26 
                 +G+PG+GK+ +++ l+++ g t+++ 
  CDO72197.1 142 FGPPGCGKTMLAKALAKESGATFINI 167
                 6*********************9985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   5.9e-05     0.028       4      44 ..     138     179 ..     135     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.9e-05
      AAA_24   4 kiliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfp 44 
                  +l++Gp+g GKT+lak l  +  + fi++ +++  ++ + ++
  CDO72197.1 138 GVLLFGPPGCGKTMLAKALakESGATFINIAASV-LTNKWYGE 179
                 589****************877777888777765.44444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   0.00014     0.066      14      35 ..     139     160 ..     131     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00014
                 EEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagll 35 
                 v ++G+ G+GK+ L+k+la+++
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKES 160
                 789***************9986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.8e-05     0.046       3      23 ..     139     159 ..     137     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-05
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l G++G+GKT+L++ la +
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKE 159
                 7899*************9975 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0    0.0001     0.048       4      71 ..     142     204 ..     139     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.0001
  Viral_helicase1   4 hGvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                       G pGcGK+ l + l+++s   +  +    +l +++  ++++l v ++ s+  +        i+++DE+
       CDO72197.1 142 FGPPGCGKTMLAKALAKESgATFINIAA-SVLTNKWYGESNKL-VAGLFSLARKTQ----PSIVFIDEI 204
                      588***************8744433433.68888887555555.444444444433....469999997 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00018     0.087      20      46 ..     137     163 ..     122     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00018
                 EEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve 46 
                 + +lL G+ G+GKT+l+++lak+ g +
  CDO72197.1 137 KGVLLFGPPGCGKTMLAKALAKESGAT 163
                 4599******************99987 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0034       1.6      21      40 ..     138     157 ..     101     168 .. 0.77
   2 ?    1.5   0.0      0.32   1.5e+02     105     134 ..     181     211 ..     163     234 .. 0.80
   3 ?   -2.1   0.0       4.2     2e+03      62      79 ..     319     336 ..     314     344 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0034
      ATPase  21 vvlitGepGtGKtifalqFl 40 
                  vl+ G pG+GKt++a+  +
  CDO72197.1 138 GVLLFGPPGCGKTMLAKALA 157
                 489************98765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.32
      ATPase 105 eelieelaeaikeikakrvviDsitgl.aye 134
                 ++l++ l +  ++++ + v iD i+++  ++
  CDO72197.1 181 NKLVAGLFSLARKTQPSIVFIDEIDSFlRER 211
                 67888899999**************993332 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.2
      ATPase  62 dlrenakslGwdleklee 79 
                  +re ++++G dle+l++
  CDO72197.1 319 PMREYMREVGGDLERLQQ 336
                 68999********99987 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0011       0.5       2      34 ..     139     171 ..     138     176 .. 0.89
   2 ?    0.7   0.0       1.2   5.6e+02      45      67 ..     304     326 ..     294     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
   Hydin_ADK   2 iivhGaPlsGKtatavtLakkYeaAlltiDsvv 34 
                 +++ G+P  GKt  a +Lak+ +a +++i   v
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGATFINIAASV 171
                 5678***********************997655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.2
   Hydin_ADK  45 aGlrArelCaeaaieqaekekee 67 
                 +G   +elC +aa++   +   e
  CDO72197.1 304 SGSDLKELCRNAAMRPMREYMRE 326
                 677779*******9987776555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00048      0.23      22      56 ..     136     167 ..     127     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00048
                      SS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEE CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheaskrkekpfvav 56 
                      +  vl+ G  G+GK++la+a+ ++s    + f+++
       CDO72197.1 136 PKGVLLFGPPGCGKTMLAKALAKESG---ATFINI 167
                      5679****************988775...455544 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.16       2      30 ..     139     167 ..     138     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG +kt+l+kalak  +++f  i
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKESGATFINI 167
                 7999****************999998655 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00041      0.19     117     138 ..     139     160 ..     123     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v+++Gp+ +Gkt+la+a+ak +
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKES 160
                 8999***************965 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00053      0.25       9      72 ..     146     213 ..     143     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00053
                      TSSHHHHHHHHHHH-TT.SEEEEGGGS-TT...-SS-HHHHHHHTTSSTT--EEEEES---SHHHHHH CS
  tRNA_lig_kinase   9 GCGkttvaltlenlfge.WghvqnDnitgk...dkkklvkealellkkdeskvvlvDrnnhqkreRkq 72 
                      GCGkt  a++l +  g  +  +    +t+k   + +klv  + +l +k + ++v++D  ++  reR +
       CDO72197.1 146 GCGKTMLAKALAKESGAtFINIAASVLTNKwygESNKLVAGLFSLARKTQPSIVFIDEIDSFLRERTK 213
                      9*************9998999999999999886778899999998899999**************986 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00069      0.33       1      23 [.     145     167 ..     145     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00069
                 TTSSHHHHHHHHHHHHTSEEEEH CS
         SKI   1 mGaGKstvGkllAkklglefiDl 23 
                 +G+GK+ ++k+lAk+ g +fi +
  CDO72197.1 145 PGCGKTMLAKALAKESGATFINI 167
                 6*******************975 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0017       0.8      23      44 ..     139     160 ..     134     172 .. 0.87
   2 ?   -0.5   0.0         2   9.5e+02     112     163 ..     189     244 ..     162     253 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0017
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl 44 
                 ++++Gp g+GKt L k +++++
  CDO72197.1 139 VLLFGPPGCGKTMLAKALAKES 160
                 679************9998765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2
    ATPase_2 112 kikkkgkkiiiiiDelqklidlgln....gaellvkeLlnliesltkekhlcvvic 163
                 ++ +k +  i++iDe+        +      + + +e+++l++ lt++++ ++v+ 
  CDO72197.1 189 SLARKTQPSIVFIDEIDSFLRERTKgdheVTGMMKAEFMTLWDGLTSSTDRILVLG 244
                 45566555789999988776555552222223344566677777777777666665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0006      0.28       2      24 ..     137     159 ..     136     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0006
   PduV-EutP   2 kkilliGkvgsGKttLtqalkge 24 
                 k +ll+G+ g+GKt L++al +e
  CDO72197.1 137 KGVLLFGPPGCGKTMLAKALAKE 159
                 669*****************876 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00066      0.31      54     116 ..     137     204 ..     129     254 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00066
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLrlie..vekedlkelpklve...llrerperfilfvDDL 116
                 + vLL+G  G+GK  l kal +e  ++ + +    ++++   e +klv+    l+++ +  i+f+D +
  CDO72197.1 137 KGVLLFGPPGCGKTMLAKALAKESGATFINIAAsvLTNKWYGESNKLVAglfSLARKTQPSIVFIDEI 204
                 569******************99887765543211233333444444441113345555567777765 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0017       0.8       3      38 ..     137     173 ..     135     181 .. 0.83
   2 ?   -2.6   0.0       7.9   3.7e+03      15      36 ..     249     270 ..     238     275 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
                    SEEEEESTTTSSHHHHHHHHHHHSTTTEE.E--EEES CS
  Guanylate_kin   3 rpvvlvgpsgaGksslkkaLlselpekfg.vsvshtT 38 
                    + v l gp g Gk +l kaL +e   +f  +  s  T
     CDO72197.1 137 KGVLLFGPPGCGKTMLAKALAKESGATFInIAASVLT 173
                    66899*******************9999536655555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.9
                    HHHHHHHHHHHSTTTEEE--EE CS
  Guanylate_kin  15 ksslkkaLlselpekfgvsvsh 36 
                     + + +a+l++ p++f++  + 
     CDO72197.1 249 PNDIDSAILRRMPKRFAIGLPD 270
                    457899999******9987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2462.43
//
Query:       CDO72198.1  [L=1059]
Description: hypothetical protein BN946_scf184970.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-12   45.4   0.0    4.1e-11   42.5   0.0    2.0  2  Transposase_21  Transposase family tnp2
     0.0016   17.7   8.5     0.0027   16.9   8.5    1.3  1  DUF2457         Protein of unknown function (DUF2457)
  ------ inclusion threshold ------
       0.03   13.8   0.0      0.062   12.8   0.0    1.4  1  DUF1258         Protein of unknown function (DUF1258)
      0.083   12.5   0.0        0.2   11.2   0.0    1.6  1  DUF4218         Domain of unknown function (DUF4218)
          1    9.4   6.2         11    6.1   5.0    2.2  2  RXT2_N          RXT2-like, N-terminal
        1.1   10.0  13.3       0.32   11.7   9.2    2.2  3  FYDLN_acid      Protein of unknown function (FYDLN_acid)
        7.5    5.6   6.4         12    4.9   6.4    1.2  1  Astro_capsid_p  Turkey astrovirus capsid protein


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.6e-14   4.1e-11      30     149 ..     403     520 ..     393     530 .. 0.88
   2 ?   -0.2   0.0      0.18   4.7e+02      40      63 ..     688     711 ..     684     717 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.6e-14
  Transposase_21  30 vrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlravl 124
                     + l ++ dG   +   s+s  +W  + + ++lPP l  k++++l   +i Gp++P k++d ++ P +  l  l +eG++++da +++ f+ +  l
      CDO72198.1 403 MTLMFSLDGAQLYE--SKSSDCWFYVWVLFDLPPTLRYKKRYVLPGAVIGGPRKP-KNVDSFIFPGLYHLAALQREGLTVWDAAEDRLFQSHLFL 494
                     56677778887777..455579*********************************.79************************************* PP

  Transposase_21 125 lwtindfPalstlsGlst.kgklacv 149
                     l    d Pa+++l Gl+  +g ++c 
      CDO72198.1 495 LLVTADGPAMAYLNGLVGhQGAHGCR 520
                     ***************98625667774 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
  Transposase_21  40 nPfgsmsssysvWpvllipynlPP 63 
                     nP  ++ss y  W  ll  y l P
      CDO72198.1 688 NPAEKISSGYKAWEFLLYVYGLLP 711
                     999*****************9877 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   8.5     1e-06    0.0027      48     116 ..      95     164 ..      84     236 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
     DUF2457  48 eEaeeeeeee....eddeedeeddddddddedddedddeedededddstved.lseeasdGyetDnEaGFAdSd 116
                 ++ae+ +       + dee ++d+d++ddd+ddd+d+d++d+ +     ++   s+  +d  e D +aG A  d
  CDO72198.1  95 ADAEMPD--LmdpmHSDEEMDDDEDNEDDDDDDDNDNDNDDDVA--VVGSSLpRSSPFDDILEGDTDAGPATGD 164
                 2222222..12122344443333333333333333333333333..1222223566678888999999988888 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.062      97     209 ..     402     523 ..     368     529 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
     DUF1258  97 nlslllsidGvsikGnkk.klWPvslilvdlPvaemqkstnillegivecsenPsta...lWnallPlilsdleskt..Gkvkkvkfkari..vtltad 187
                  ++l+ s+dG ++  +k    W   ++l dlP ++  k   +l  +++ +  +P  +   ++  l  l     e  t    ++   f+ ++  + +tad
  CDO72198.1 402 DMTLMFSLDGAQLYESKSsDCWFYVWVLFDLPPTLRYKKRYVLPGAVIGGPRKPKNVdsfIFPGLYHLAALQREGLTvwDAAEDRLFQSHLflLLVTAD 500
                 57999*******98877669*******************************999865111344444444444443321134566678877522678*** PP

     DUF1258 188 qPakrslfGlrahqseksc.ffc 209
                  Pa   l Gl  hq ++ c ++c
  CDO72198.1 501 GPAMAYLNGLVGHQGAHGCrLYC 523
                 *****************996688 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05       0.2      33      88 ..     774     829 ..     744     844 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
     DUF4218  33 ffdvmvHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsiaEayv 88 
                 f    vH + H+v e+   GP ++ + +++e ++  + + ++++a+p   ++E  +
  CDO72198.1 774 FVRQSVHATTHIVPEIFRLGPGTLYTQWTLENYIGSITREIKQHATPYANVSERAL 829
                 667789*****************************************999988765 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.0    0.0041        11      56      80 ..     109     133 ..      81     151 .. 0.59
   2 ?    1.8   0.0     0.085   2.2e+02       6      49 ..     728     771 ..     727     785 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0041
      RXT2_N  56 ekekeekeeeeedeegdeededddd 80 
                 ++e +++e++e+d+++d++d+d+dd
  CDO72198.1 109 DEEMDDDEDNEDDDDDDDNDNDNDD 133
                 2333333333333333333433333 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.085
      RXT2_N   6 KLkkkaefvhegrLnsskgdeelkkkveyngserkilsrnpier 49 
                 KL +  +++ ++rL++++ + ++++ vey+    ++ ++++ier
  CDO72198.1 728 KLVSAVRVILQRRLEPAQLPGAHRNFVEYAEGLESLYYQRRIER 771
                 999999****************9*******99999999888887 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   9.2   0.00013      0.32      45     101 ..      79     136 ..      66     140 .. 0.53
   2 ?   -3.4   0.0         6   1.5e+04      12      21 ..     308     317 ..     306     329 .. 0.65
   3 ?   -2.5   0.0       3.3   8.5e+03      59      95 ..     367     401 ..     339     410 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
  FYDLN_acid  45 raaaaeaeeakkkkeeeedeedeeeeedvsdedadeeeee.dddddvdleedddddvf 101
                 r+aaa+a++a  ++ e+++e  +  +   sde+ d++e++ ddddd+d ++d+dddv+
  CDO72198.1  79 RSAAARARHAGITAMEADAEMPDLMDPMHSDEEMDDDEDNeDDDDDDDNDNDNDDDVA 136
                 3444444444333333333444444444555555555555244445667777777776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6
  FYDLN_acid  12 CpscgakFYD 21 
                 Cp cg+  YD
  CDO72198.1 308 CPFCGEARYD 317
                 5555555554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
  FYDLN_acid  59 eeeedeedeeeeedvsdedadeeeeedddddvdleed 95 
                 +++e+ +++   +dv   +a  e+   +dd+  l++d
  CDO72198.1 367 QAKEHPHASPVLDDVYYGQAYLEA--VQDDTRPLGDD 401
                 233333333333333333333333..34443333222 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.4    0.0047        12     230     281 ..      88     134 ..      51     141 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0047
                     ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX CS
  Astro_capsid_p 230 aeeeisdpsdeedeevsdeetdtevesdeDeddevdrfDletsyeSeaeDdd 281
                     a  + ++++ e  + ++   +d+e+++deD++d+ d+ D ++      +Ddd
      CDO72198.1  88 AGITAMEADAEMPDLMDPMHSDEEMDDDEDNEDDDDDDDNDND-----NDDD 134
                     3334444444444455566666666666666666666555332.....3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 6789.37
//
Query:       CDO72199.1  [L=641]
Description: hypothetical protein BN946_scf184970.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   13.4   0.0       0.21   11.7   0.0    2.0  1  LEA_6     Late embryogenesis abundant protein 18


Domain annotation for each model (and alignments):
>> LEA_6  Late embryogenesis abundant protein 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05      0.21      18      46 ..     608     636 ..     604     641 .] 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
       LEA_6  18 kYkdLEDYkrkgYGteGHqepkpgrGaga 46 
                  Yk+L  Ykr++Y + G ++p   r a++
  CDO72199.1 608 WYKNLSSYKRNAYAASGGRDPSSSRMAAS 636
                 5********************99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1683  (0.0938703); expected 358.6 (0.02)
Passed bias filter:                      863  (0.0481343); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 4538.00
//
Query:       CDO72200.1  [L=1191]
Description: hypothetical protein BN946_scf184970.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-38  131.2   0.1    2.7e-38  130.4   0.1    1.4  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    5.4e-36  122.6   0.0    9.5e-36  121.9   0.0    1.4  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    5.8e-29  101.2   0.1    9.3e-29  100.5   0.1    1.3  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    3.7e-20   71.8   0.7    7.4e-20   70.8   0.7    1.5  1  Integrase_H2C2   Integrase zinc binding domain
    3.6e-14   53.0   0.0    1.2e-13   51.3   0.0    2.0  1  rve              Integrase core domain
    9.5e-05   22.2   0.0    0.00017   21.4   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
     0.0003   21.4   0.0    0.00058   20.5   0.0    1.4  1  Asp_protease_2   Aspartyl protease
    0.00071   19.7   0.0     0.0019   18.4   0.0    1.8  1  zf-H2C2          H2C2 zinc finger
     0.0049   16.8   0.5     0.0049   16.8   0.5    2.3  3  Chromo           Chromo (CHRromatin Organisation MOdifier) do
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.023   15.3   0.0    1.4  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
      0.015   15.5   1.4       0.05   13.8   1.4    1.8  1  DUF4726          Domain of unknown function (DUF4726)
       0.35   11.2   4.7       0.45   10.8   1.2    2.6  2  DUF4129          Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.1   1.8e-41   2.7e-38       3     105 .]     514     617 ..     512     617 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 1.8e-41
                 TS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHHH CS
   RT_RNaseH   3 skpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarWa 99 
                 ++p+ le+DAs++++gavLsq ++dg ++piaf+S+++s++erny++++kellAi+ al++frhyl g ++ f++ tDhknl+y  ++++ln+r+arW+
  CDO72200.1 514 NDPYRLECDASNYAVGAVLSQ-RQDGVWHPIAFLSKAMSSTERNYEIYDKELLAIMTALDEFRHYLMGaAQpFEIWTDHKNLEYYRKPQKLNRRQARWV 611
                 67999****************.9*********************************************9778*************************** PP

                 HHC-XX CS
   RT_RNaseH 100 leLsey 105
                  eL++y
  CDO72200.1 612 SELANY 617
                 ****99 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   6.4e-39   9.5e-36       1      99 [.     487     586 ..     487     587 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 6.4e-39
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllg..r 96 
                  W+++q +af +lk+a++sapvLa+p ++ p+ le+DaS++++gavLsq++d g ++piaf S+++s++erny++++kellAi+ al++frhyl+g  +
   CDO72200.1 487 WGPTQAQAFAALKSAICSAPVLAIPTDNDPYRLECDASNYAVGAVLSQRQD-GVWHPIAFLSKAMSSTERNYEIYDKELLAIMTALDEFRHYLMGaaQ 583
                  9**************************************************.67****************************************9766 PP

  RT_RNaseH_2  97 kft 99 
                  +f+
   CDO72200.1 584 PFE 586
                  665 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.1   6.2e-32   9.3e-29       1     222 []     264     425 ..     264     425 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 6.2e-32
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ++Kk+ g+ Rp+     dy +ln +++k           +++p  ++              ++k k+a++++klD++ ++++v+ +  ++ ++af+++ 
  CDO72200.1 264 VKKKD-GKLRPV----QDYCKLNDITVK---------NRYPLPLVQDL-------------INKLKRARYFTKLDIRWGYNNVRIRPGDEWKAAFRTN- 334
                 69***.*****9....9***********.........***********.............8999*********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                                         +g++e  ++ +G+++SP++f+ +mn+l+r l +r    +++ Y DDili++++ ee+ +++++v + l+e++l +
  CDO72200.1 335 ------------------------RGLFEPLVMFFGLTNSPATFQSMMNDLFRNLINR---GVVIIYLDDILIFTRTLEEHRRVVREVLQILRENKLYL 406
                 ........................9********************************7...799*********************************** PP

                 EGGG-EEE.....ESSEEETTEEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvtl 222
                 ++eK+++      +++++yLG+++
  CDO72200.1 407 KDEKCEFE-----RTKIEYLGMII 425
                 ********.....9*******975 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.7   4.9e-23   7.4e-20       2      58 .]     719     777 ..     718     777 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 4.9e-23
  Integrase_H2C2   2 pkslrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkps 58 
                     +++lr++i++  Hds  agH+G+ kt e++ r y+Wp+++ d+++y+  Ce+Cqr+k++
      CDO72200.1 719 DRHLRERIIRMNHDSvsAGHPGRYKTQELVTRDYWWPRLQGDIRRYIEGCEVCQRTKAR 777
                     689******************************************************85 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   8.1e-17   1.2e-13       6     118 ..     796     906 ..     791     907 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 8.1e-17
         rve   6 elwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqd 104
                 e++++D++ +++p+ +g   +l vvd  s+ ++a+++  e +a+ +++l  + v r++g+ p++v+sD+g++++s+ ++++ + lgi+  ++ p++pq+
  CDO72200.1 796 EVISIDMV-GALPESEGYDAILNVVDLRSKQLIAIPCNVELSAEGWAQLFFQHVYRRKGL-PRKVISDRGPQFVSRFLKALYELLGIKGNPSTPYHPQT 892
                 67888988.444689999******************************************.************************************** PP

         rve 105 nGkvErfhrtlkde 118
                  G  Er ++ +++ 
  CDO72200.1 893 DGQTERVNQEIEQY 906
                 *********99985 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   0.00017      33     132 ..      10     111 ..       6     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
       RVP_2  33 atvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksve..ieiqgiefladlilLdlkdlDviLgmdWLsknkanidcaekkvt 129
                  + L+dsG + s i   fv+++++++ +L  p+ +    +   +   i++ ve  ++i +++  + l +  l + D+ +g +WL  ++ +id +++++ 
  CDO72200.1  10 VQALLDSGCTGSSIDVDFVRRNHIPTRKLPRPIPVYNADNTLNKGGPISEYVEgiVRIGDHSERMTLAVTSLGKSDIFIGYEWLRFHNPEIDWHSQTIK 108
                 5679*******************************9984444455678888865599****************************************98 PP

       RVP_2 130 ltk 132
                 + +
  CDO72200.1 109 FDR 111
                 876 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.9e-07   0.00058      10      90 .]      10      92 ..       4      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.9e-07
  Asp_protease_2 10 vrfllDTGasttlispelaeklglkvreseltvrvsgagge.vka...rlvrldslklggltlknvpalvldlgeeidglLGmdf 90
                    v++llD+G++++ i+ +++++  +++r++++++ v  a+ + +k+   ++++   +++g+ + ++++++v+ lg ++d+ +G+++
      CDO72200.1 10 VQALLDSGCTGSSIDVDFVRRNHIPTRKLPRPIPVYNADNTlNKGgpiSEYVEGIVRIGD-HSERMTLAVTSLG-KSDIFIGYEW 92
                    799***************************9999977766544433114455555*****.5668999999966.9999999986 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.3e-06    0.0019       4      39 .]     737     772 ..     735     772 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                  H G  k+ +l++r Y w+++   +++ i+ C +Cq
  CDO72200.1 737 GHPGRYKTQELVTRDYWWPRLQGDIRRYIEGCEVCQ 772
                 699999*****************************9 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       8.2   1.2e+04      18      26 ..     704     712 ..     688     715 .. 0.63
   2 ?   -3.2   0.0       5.4   8.1e+03      44      54 .]     986     996 ..     978     996 .. 0.79
   3 !   16.8   0.5   3.3e-06    0.0049       2      52 ..    1094    1144 ..    1093    1146 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.2
                 EEEEEEETT CS
      Chromo  18 leYlVKWkg 26 
                 +e lV Wkg
  CDO72200.1 704 EEGLVTWKG 712
                 455899998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.4
                 SHHHHHHHHHH CS
      Chromo  44 fqelideFkkr 54 
                 +qe+ ++F++r
  CDO72200.1 986 AQEQMKRFHDR 996
                 6999*****98 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 3.3e-06
                  EEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSH..SHHHHHHHH CS
      Chromo    2 eVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekc..fqelideFk 52  
                   +e+I++++  +++l  +Y ++Wk+ p se  W ++++  k   + +li  F+
  CDO72200.1 1094 DIEEIVNSKRERGRL--YYHIRWKDRPRSEWQWLTAAETRKYpgAIDLIATFH 1144
                  69*************..****************99999888855555555555 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.5e-05     0.023       9      91 ..       9      94 ..       6      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                     EEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTST.T-EEE..EEE.EEEE.EETTEEEEEEEEEESSSSEEEEHHHHH CS
  gag-asp_proteas  9 pvkflvDTGAsstiiseelaerlglsrkedkgkvevktangev.eakrv..rld.svkiggielrnvsavvlegelddlLLGldfLk 91
                     +v++l+D+G + ++i  ++++r ++++++ +++  v +a+ +  +++++  +++  v+ig+++ r ++++v++  ++d+ +G ++L+
       CDO72200.1  9 SVQALLDSGCTGSSIDVDFVRRNHIPTRKLPRPIPVYNADNTLnKGGPIseYVEgIVRIGDHSER-MTLAVTSLGKSDIFIGYEWLR 94
                     699************************************99974665553345535899998776.788888888899999988875 PP

>> DUF4726  Domain of unknown function (DUF4726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.4   3.4e-05      0.05      19      67 ..     953    1002 ..     947    1008 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
     DUF4726   19 grpppqpsrderaqqlldaveqrqrqlldti.aaceemlrqlgrrrpepa 67  
                  g  p +p r+e aq+++d v++ + +   ++ aa e+m r   rrr ep 
  CDO72200.1  953 GTTPRRPVRNETAQEFVDRVNRIREEAASAMrAAQEQMKRFHDRRRGEPR 1002
                  77899***************9866666555427889999999******95 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2    0.0003      0.45      16      44 ..     959     988 ..     952    1005 .. 0.84
   2 ?    0.3   0.1      0.59   8.8e+02      44      62 ..    1107    1125 ..    1091    1130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
     DUF4129  16 rrpgeTprEyarrv.riapspaaalaalae 44 
                 + + eT++E++ rv ri+ ++a a++a+ e
  CDO72200.1 959 PVRNETAQEFVDRVnRIREEAASAMRAAQE 988
                 3467********************999855 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.59
     DUF4129   44 elfeearYGgrpasaeeyr 62  
                  +l++++r+ +rp s+ ++ 
  CDO72200.1 1107 RLYYHIRWKDRPRSEWQWL 1125
                  89************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 7915.03
//
Query:       CDO72201.1  [L=403]
Description: hypothetical protein BN946_scf184970.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-07   29.9   3.5    8.1e-07   29.2   0.1    2.6  2  Retrotrans_gag   Retrotransposon gag protein
    1.3e-06   28.2   2.3    2.5e-06   27.3   2.3    1.4  1  zf-CCHC          Zinc knuckle
      0.004   17.1   4.0     0.0099   15.8   4.0    1.6  1  Apolipoprotein   Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.016   15.4   0.9      0.038   14.1   0.9    1.6  1  DUF2890          Protein of unknown function (DUF2890)
      0.043   13.9   4.1       0.06   13.4   0.6    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.12   11.7   0.7       0.21   10.9   0.7    1.2  1  DUF4407          Domain of unknown function (DUF4407)
       0.13   12.7   0.2       0.54   10.7   0.0    2.1  3  TRCF             TRCF domain
       0.17   12.2   1.8        0.3   11.4   1.8    1.3  1  OmpH             Outer membrane protein (OmpH-like)
        0.2   12.1   4.6       0.26   11.7   0.1    2.2  2  RecX             RecX family
       0.22   11.3   2.8       0.43   10.3   2.8    1.5  1  zf-CCHC_5        GAG-polyprotein viral zinc-finger
       0.24   11.2   1.1       0.42   10.4   1.1    1.4  1  zf-CCHC_4        Zinc knuckle
       0.44   10.4   2.6        0.7    9.8   2.6    1.3  1  zf-CCHC_2        Zinc knuckle
       0.67    9.8   5.2       0.14   12.1   1.3    1.7  2  GvpL_GvpF        Gas vesicle synthesis protein GvpL/GvpF
        1.9    8.1   8.4       0.14   11.8   3.5    1.5  2  DUF5549          Family of unknown function (DUF5549)
        3.9    8.2   8.1        3.2    8.5   6.3    1.8  2  DUF4404          Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.9       0.8   9.6e+02      47      78 ..      26      58 ..      14      78 .. 0.61
   2 !   29.2   0.1   6.8e-10   8.1e-07       8      94 ..     143     230 ..     137     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.8
  Retrotrans_gag 47 dqleeelsslrQgtesvreYvtrf.ktladqld 78
                    ++le++ +sl + +  ++e+ ++f ++l ++l+
      CDO72201.1 26 AELEQRQRSLDEANAVINEARDQFtEQLEQRLR 58
                    445555555555566666666666444444444 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 6.8e-10
  Retrotrans_gag   8 egaAkswlkslvarsida.sesWkdlkkaflktflpserkdqleeelsslrQ..gtesvreYvtrfktladqldevlteeakiekflaGL 94 
                     +g+A++w +  v++  ++   sW+d+ + ++++f +++ + +++ ++ +l+   +  + +eY++ f++l ++ +  + eea+ ++f++GL
      CDO72201.1 143 TGRAAAWRTLQVEKYGREgYPSWEDFASSLRDQFGDPDPRTTAQIRIARLSMetDRLTADEYINAFEQLEHRTE--FGEEALRVQFRRGL 230
                     688888877666666666799******************************954556788**************..*************9 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   2.3   2.1e-09   2.5e-06       3      18 .]     348     363 ..     347     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.1e-09
                 TSSSSSSSSTTTTSTS CS
     zf-CCHC   3 CynCGepGHiardCpk 18 
                 C++CG+ GHi rdCp+
  CDO72201.1 348 CFTCGQRGHIQRDCPN 363
                 ***************6 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   4.0   8.3e-06    0.0099      24      88 ..      10      77 ..       4      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-06
                    HHHHHHHHHHHHHHHHHHH...HHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH CS
  Apolipoprotein 24 aqelrdrlskeleelrarl...raeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaa 88
                    + + +++l  e + lra+l   ++ l+e++a + + rd++ eql+q+l e  q+la  +e +  +l++
      CDO72201.1 10 NSSDPTTLHSEIQRLRAELeqrQRSLDEANAVINEARDQFTEQLEQRLRERSQELAHSLEGRLVSLLE 77
                    556789999***********999********************************9999887766655 PP

>> DUF2890  Protein of unknown function (DUF2890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   3.1e-05     0.038       7     116 ..     239     342 ..     234     386 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
     DUF2890   7 lqlpppppt.deeeywdsqaeevldeeeelmedldsldeaseaeevsdetpspsvafPspapqklatvpsiattsapqappalpvrrpnrrwdttgtra 104
                  +lp pp t    +yw    +    + ee    + + d as+        p+p+ a P p         s a+ s pqa  a p      r d+tg   
  CDO72201.1 239 TNLPTPPTTlAATKYWARHFDREHRRREEERHRFTR-DLASR---GRGTNPAPARASPTPSAA---MQTSRAAPSVPQAASASPTTTSTDRRDSTGVTF 330
                 467666666345678887766544443333333322.33444...234557776666555433...44799999**********************999 PP

     DUF2890 105 akskrpptlaai 116
                 + + +p  + a 
  CDO72201.1 331 GGTGQPMDIDAA 342
                 988888655543 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   5.1e-05      0.06      31      56 ..      16      41 ..      15      41 .. 0.94
   2 ?   -0.1   0.2      0.84     1e+03      28      41 ..     188     201 ..     186     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
     DUF1192 31 lLeaEIaRleaaiakkkasraAAeal 56
                +L +EI+Rl+a++++++ s + A+a+
  CDO72201.1 16 TLHSEIQRLRAELEQRQRSLDEANAV 41
                699********************996 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.84
     DUF1192  28 rIalLeaEIaRlea 41 
                 rIa L  E +Rl a
  CDO72201.1 188 RIARLSMETDRLTA 201
                 9*******999976 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   0.00018      0.21     131     171 ..      17      57 ..       7      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
     DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk 171
                 l +e+++l+a++++ q+ +d+a+a ++++r++++++l++  
  CDO72201.1  17 LHSEIQRLRAELEQRQRSLDEANAVINEARDQFTEQLEQRL 57 
                 67899999999999999999999999999999999999765 PP

>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.9   7.1e+03      32      44 ..      19      31 ..      16      46 .. 0.79
   2 ?   -2.3   0.1       5.1   6.1e+03      30      47 ..      34      51 ..      23      60 .. 0.73
   3 ?   10.7   0.0   0.00045      0.54      34      72 ..     165     203 ..     160     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.9
        TRCF 32 eeldeleeeLiDr 44
                +e+++l++eL+ r
  CDO72201.1 19 SEIQRLRAELEQR 31
                6788899998887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.1
        TRCF 30 teeeldeleeeLiDrFGk 47
                + +e +++ +e +D+F +
  CDO72201.1 34 SLDEANAVINEARDQFTE 51
                567777777777777754 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00045
        TRCF  34 ldeleeeLiDrFGklpeevenLlevarlkllakklgiek 72 
                  +++++ L+D+FG++ + +   +++arl +  ++l  ++
  CDO72201.1 165 WEDFASSLRDQFGDPDPRTTAQIRIARLSMETDRLTADE 203
                 579999**********************99998887665 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.8   0.00025       0.3      24      73 ..      17      65 ..      12      80 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHH CS
        OmpH 24 lekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelq 73
                l +++++l+aele+++++l+++ + ++++  +  +e+ eq l+++ qel 
  CDO72201.1 17 LHSEIQRLRAELEQRQRSLDEANAVINEARDQF-TEQLEQRLRERSQELA 65
                445555666666666666666666665333332.5555555666666554 PP

>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.8      0.55   6.6e+02      46      95 ..      22      69 ..      18      79 .. 0.61
   2 ?   11.7   0.1   0.00022      0.26      41     106 ..     215     280 ..     195     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.55
                HHHHHHHHTTT--HHHHHHHHTTS-HHHHHHHHHHHHHHHTTTS-HHHHH CS
        RecX 46 rrikqeLkqkGiseelieqaleeldeeeqarelaekklkklkkeedekek 95
                +r+++eL q+  s + ++++++e    +q +e++e++l++ ++e    ++
  CDO72201.1 22 QRLRAELEQRQRSLDEANAVINE--ARDQFTEQLEQRLRERSQELAHSLE 69
                68999999999999999999984..3333444444444443333334444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00022
                 ----HHHHHHHHHTTT--HHHHHHHHT.TS-HHHH.HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTT CS
        RecX  41 rgyGprrikqeLkqkGiseelieqale.eldeeeq.arelaekklkklkkeedekekqklvrfLarrG 106
                 ++ G+ +++ +  ++G+++ l ++ ++  +  ++  a++ +++++++  ++++e+e+++ +r La+rG
  CDO72201.1 215 TEFGEEALRVQF-RRGLPAWLLDKLTNlPTPPTTLaATKYWARHFDRE-HRRREEERHRFTRDLASRG 280
                 566666666664.68999999998888533333336***********9.5788**************9 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.8   0.00036      0.43       2      19 ..     345     362 ..     344     365 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00036
                 --B-TTT-SSBS-TTT-- CS
   zf-CCHC_5   2 pglCpRCkkgkHwardCh 19 
                  g C  C+++ H  rdC 
  CDO72201.1 345 RGMCFTCGQRGHIQRDCP 362
                 699**************5 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00035      0.42      31      48 ..     345     362 ..     343     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
   zf-CCHC_4  31 rsfCyiCgvlGHsdkrCd 48 
                 r +C++Cg  GH  ++C+
  CDO72201.1 345 RGMCFTCGQRGHIQRDCP 362
                 568**************8 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.6   0.00059       0.7       5      21 .]     347     363 ..     347     363 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00059
   zf-CCHC_2   5 vChiCgkkGHyIqdCPt 21 
                 +C  Cg+ GH  +dCP+
  CDO72201.1 347 MCFTCGQRGHIQRDCPN 363
                 7***************6 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.3   0.00011      0.14     133     187 ..      18      77 ..      10     108 .. 0.80
   2 ?   -1.9   0.1       2.1   2.5e+03      99     122 ..     202     225 ..     198     281 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
   GvpL_GvpF 133 dpelrelreeieaases.....gtayllrkrlgqrleealeerreelaeeleeaLaplae 187
                 + e+++lr+e+e++++s     +   ++r ++ ++le++l+er +ela  le +L +l e
  CDO72201.1  18 HSEIQRLRAELEQRQRSldeanAVINEARDQFTEQLEQRLRERSQELAHSLEGRLVSLLE 77 
                 456666666666666666665545789999***********************9988766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
   GvpL_GvpF  99 delreaLerlagkvEygvkvlwde 122
                 de+ +a+e+l+ ++E+g ++l  +
  CDO72201.1 202 DEYINAFEQLEHRTEFGEEALRVQ 225
                 667777777777777764444433 PP

>> DUF5549  Family of unknown function (DUF5549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.5   0.00011      0.14      81     166 ..     240     326 ..     233     342 .. 0.79
   2 ?   -4.1   0.2       9.1   1.1e+04      85     102 ..     348     365 ..     347     369 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
     DUF5549  81 slpscsctsqpshiqpgtvrrpprgrggwevrrrp.....grgrgrqrrwgleraeqaerglagepgagpktppvtlpsstppaqdgkkea 166
                  lp+ + t  +++ +     r +r r     r+r       rgrg      + ra  +  + ++ ++a p+ p ++  s+t  + d +  +
  CDO72201.1 240 NLPTPPTTLAATKYWARHFDREHRRREE--ERHRFtrdlaSRGRG--TNPAPARASPTPSAAMQTSRAAPSVPQAASASPTTTSTDRRDST 326
                 5888888989989999888888888864..455442343355555..5567*******************************999977655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 9.1
     DUF5549  85 csctsqpshiqpgtvrrp 102
                 c  + q +hiq+++  r 
  CDO72201.1 348 CFTCGQRGHIQRDCPNRK 365
                 88899999*999987665 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.3    0.0027       3.2       1      53 [.      17      68 ..      17      78 .. 0.85
   2 ?   -2.9   0.0       9.2   1.1e+04      63      79 ..     360     376 ..     356     377 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0027
     DUF4404  1 LkelLekLheeLeqnesldeetralLeslaedieellaeedaaaeeeelaerl 53
                L +++++L++eLeq ++  +e +a++++++++  e+l++   + ++e la  l
  CDO72201.1 17 LHSEIQRLRAELEQRQRSLDEANAVINEARDQFTEQLEQRLRERSQE-LAHSL 68
                67899**********999999*****************998888886.55554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.2
     DUF4404  63 eHPklagvlreildsLa 79 
                 + P+ + v+r++++ L+
  CDO72201.1 360 DCPNRKIVVRNLVQQLS 376
                 66888899999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1561  (0.0870656); expected 358.6 (0.02)
Passed bias filter:                     1109  (0.0618551); expected 358.6 (0.02)
Passed Vit filter:                       197  (0.0109878); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 2609.85
//
Query:       CDO72202.1  [L=306]
Description: hypothetical protein BN946_scf184970.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-21   75.8   0.0    6.4e-21   75.1   0.0    1.4  1  Asp       Eukaryotic aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   3.6e-25   6.4e-21      72     314 ..      54     303 ..       2     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 3.6e-25
                 EEEEEEEEETTEEEEEEEEEEEEEESSHHHTTSSSSEEEE-S-GGGSCGGSCCH...HHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  72 flsqdtvkvggltvknqefgeatkepgstflaakfdGiLGlgfkeisveeatpv...fdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGs 167
                 f+++d v+++g+tv+++ +g+ t  ++      + dG+ Gl+ ++ + +++++     ++ +++g ++   f++ +   +++ g++vfG +D++k kG 
  CDO72202.1  54 FFVRDDVQFAGVTVHDFLVGNITLGDD-----LPGDGVAGLSPPASDNDDFSNGqglIETFCQEGHLAPCQFGLAFG--KDNHGSLVFGEMDQTKTKGP 145
                 6899*****************999998.....589*******999988885444444999****************7..8889**************** PP

                 EEEEEESSTSSTEEEEEEEEETTEEE.....EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET......TCEEEEETTGGGGSEEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 168 ltyvpvtskgywqielesvtvggktv.....lcssgcqailDtGTsllalptsivekiakaigakkses......egeyvvdCdslsslpdisftigga 255
                 +t++p t +  wq+  +  +++++ +       ++ +  ++D+GT  +++p ++v+++ +  g + +e+          + dC+       +sf  ++ 
  CDO72202.1 146 VTVLPTTDQDSWQVL-NATEANSTVLvvdgkPFAHIVPTLVDSGTPNIIGPLETVRALLQSQGYNVTEQtngfvtVALGTYDCARPAARVGFSFPPSTE 243
                 ************983.333444333332222225566667*******************99998888874444443344569***99999999999999 PP

                 EEEEEGGGGEEEESSSTTSEEEESE..EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 256 kitvpvselvlkeeeseesqCilgl..vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                    v +++ vl++++++  +C+ ++  +s+ + + w +G++  +  yv +dldn++v++A 
  CDO72202.1 244 VHYVDLEANVLNRTADG-RICTANIlgTSTVDAPFWSIGQTWFQGRYVQHDLDNSTVSFAD 303
                 9*************987.7******99999999**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2222.37
//
Query:       CDO72203.1  [L=281]
Description: hypothetical protein BN946_scf184970.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-10   40.2   0.0    7.4e-10   39.7   0.0    1.3  1  Metallophos    Calcineurin-like phosphoesterase
    1.5e-05   25.3   0.0    0.00079   19.7   0.0    2.2  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.038   14.7   0.2      0.096   13.4   0.1    1.7  2  TetR_C_33      Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.2e-13   7.4e-10       2     204 .]      10     249 ..       9     249 .. 0.63

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.2e-13
                  EEEEEESBTB..........TTCCTHHHHHHHHHHHHHHHTTESEEEEEST...SSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHH.HHHHHH CS
  Metallophos   2 rilvigDlHl..........algggqlddllkllddllreekpdlvllaGD...lvdrgdlekellellaalvkypipvylllGNHegfee.ellnky 85 
                  ri +i+DlHl           +g+g+l++++       +  ++ ++l  GD    vd+  l +++  +l+++      ++ ++GNHe  +  +l ++ 
   CDO72203.1  10 RIQIISDLHLeverasskqtTDGDGGLYQFDFPA----CA-DHLALL--GDigmTVDDR-LFTWIRAQLERFAV----IFYVPGNHE-PYWsSLDESH 94 
                  6779*****9999999977766777777776544....33.445666..**99655555.77735555999999....7********.6665666665 PP

                  HHHHHHHHHHEHHHCEEETSEEEEEETTE.........EEEEEEESE......CEEE....THHHHHHHHHHHSCHHHHCC.....HHHHHH....HH CS
  Metallophos  86 gylgifsepwrsdaevfnnlplaslgsgs.........lkvlllhGg......spel....lvsldklgslnleleapepg.....dewlkd....le 155
                    l+ f++   ++  + ++ pl +++  +         ++vl           +p +     +sl++ ++++ + +++ ++      +wl++      
   CDO72203.1  95 SRLAQFAAACATE-PCDSGRPLGQFVVLNrtrydlsatTTVLG---CtlwarlNPADldilRWSLTDFRRIEGFNPTKYQEehardVQWLSQavaeIA 188
                  5555553333333.44444444443333332222211222222...2334556333368885566666666666665555566699************ PP

                  HHTTCSEEEEEESSESS........CSSSCSCCHHHHH....HHHHHTT.....ESEEEEESSSSE CS
  Metallophos 156 krekadwvivlgHsply........rgsgylfgdeale....dllkkyg.....vdlvisGHtHvy 204
                  ++e+++ +i+++H+ ++        + +g++ +  a+e    +           v+++ +GHtH++
   CDO72203.1 189 QFEPHRRLIIMTHHAPTvegtgdpkYANGPTNSAFATEfvgsE-----IwrpelVKVWMFGHTHWC 249
                  ******************8876655444444444444444432.....0446669*********96 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.3e-07   0.00079       3     141 ..      11     260 ..      10     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-07
  Metallophos_2   3 laiiSDlH.......snldaleav.........lealkevgvdaiihaGDl.eeeepevleellela....pvlaVrGNnD............... 62 
                    + iiSDlH       s                 ++    + +d++ ++GD+ ++++     ++++++     + +V+GN++               
     CDO72203.1  11 IQIISDLHleverasS-------KqttdgdgglYQFDFPACADHLALLGDIgMTVDDRLFTWIRAQLerfaVIFYVPGNHEpywssldeshsrlaq 99 
                    779*****66654430.......2334456665555555569********975555543333333334445999********************** PP

  Metallophos_2  63 ................................................................eevveedvlreaaelgtdlpeeaelelagek. 93 
                                                                                          +  +e++  + +  ++a+ e+a+++ 
     CDO72203.1 100 faaacatepcdsgrplgqfvvlnrtrydlsatttvlgctlwarlnpadldilrwsltdfrriegF---NPTKYQEEHARDVQWLSQAVAEIAQFEp 192
                    *********************************************99999999988877644330...3333333333333334555666655555 PP

  Metallophos_2  94 ....vlliHgdpl..............gvkdalaellkeaeegsd..vvvcGHtHvpevekeggvlvv 141
                        + ++H+ p               + + a + + +e + ++   v ++GHtH    ++++g++vv
     CDO72203.1 193 hrrlIIMTHHAPTvegtgdpkyangptNSAFATEFVGSEIWRPELvkVWMFGHTHWCCDFEREGIRVV 260
                    555799****988*****99888775444444444444444444455********9999999999888 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.6e-05     0.096       9      75 ..      63     143 ..      58     147 .. 0.82
   2 ?   -2.3   0.0       1.3   7.8e+03      35      54 ..     168     187 ..     150     216 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
                 HHHHHH-HHHHHHCCSS--TT-S-H..GHHCCCCHHHHHHHHHHHGGG---TH.............-.-CCHHHHHHHHHHHH CS
   TetR_C_33   9 rrfAlahpaeYallfgspvpgyaap..delaaagarvlalllaalaalvaagl.............p.padavaaaralwaal 75 
                  ++ +a+ +++a++f   vpg ++p  + l ++ +r+ +  +a++ +  ++g+             + +a ++ +  +lwa+l
  CDO72203.1  63 FTWIRAQLERFAVIF--YVPGNHEPywSSLDESHSRLAQFAAACATEPCDSGRplgqfvvlnrtryDlSATTTVLGCTLWARL 143
                 68*************..*******9887999******9999999987768888777788887777752444777777778776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                 HHCCCCHHHHHHHHHHHGGG CS
   TetR_C_33  35 elaaagarvlalllaalaal 54 
                 +++++ ar ++ l +a+a+ 
  CDO72203.1 168 KYQEEHARDVQWLSQAVAEI 187
                 45555555566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1989.06
//
Query:       CDO72204.1  [L=754]
Description: Glycoside Hydrolase Family 37 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-96  322.2   0.1    8.7e-84  282.2   0.0    2.4  2  Trehalase  Trehalase
     0.0064   15.5   0.0      0.025   13.5   0.0    1.8  2  GDE_C      Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.2   0.0   9.7e-88   8.7e-84       3     390 ..      83     502 ..      81     521 .. 0.92
   2 !   37.0   0.4     2e-13   1.8e-09     461     509 ..     652     699 ..     646     702 .. 0.85

  Alignments for each domain:
  == domain 1  score: 282.2 bits;  conditional E-value: 9.7e-88
                 TTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHTTT CS
   Trehalase   3 fgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrkikk 101
                 ++d kt+vD + +++ +++l++++a +++    +i++  +  f+++ f  +g ele+++  +++ qp   l+ ++d+ ++++a+ ++  w +l+r+ + 
  CDO72204.1  83 YSDPKTIVDKPTSKKSQQVLEDFSAIQNS----TITEGAIVTFLDNDFRGEGLELEAVELAEFNAQPA-LLNNVSDPLVKAFAQTVHGYWAQLIRQTNS 176
                 89*********************999888....599*******************************9.88999*********************9997 PP

                 S......-SCE-TTECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHH CS
   Trehalase 102 k......vgllpeassllplpkpfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyek 194
                 +      +++ p +ssl+pl++ fvVPGgRFrE YyWDsY++++GL++s+ + ++++ ++nf+ +ie++G+i+Ng+R YYl RSQPPl+  m+ +++++
  CDO72204.1 177 SalcpegTENGPCESSLIPLNHTFVVPGGRFREQYYWDSYWIVQGLIKSELFSIVNDTLQNFVDEIEHFGFIPNGGRIYYLDRSQPPLFIRMLSDYVSA 275
                 63332225788999************************************************************************************* PP

                 CHCCHHHHHHHHHHHHHHHCCTTTCCETTCCC..-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTT.........................HCCHHHH CS
   Trehalase 195 teddallravlaalkkeyefwmaeqrldevtk..lskryllnrygvpeetprpesyledketaeklk.........................kerkkee 266
                  +d+a+l+++l+  +ke++ w+ ++r+ +vt+  ++++y +  y v++  prpesy + k +                              +e+++e+
  CDO72204.1 276 SNDTAILERALPLAEKELKWWT-DNRTLNVTSpfTNQSYPMAHYSVNNTAPRPESYFQGKTSTMLSAiddlltivraldystandptlqtplTEEEREN 373
                 **********************.666666665224579******************98776554444569999******************999***** PP

                 HCCCCHHHHHCCHHCHHHHCCC.....CTT-S.TCCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE- CS
   Trehalase 267 vyrelkaaaesgwdlssRwlre.....sghdtgellelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvyl 360
                 +y+el+++ae+gwd+ssRw+++     s ++t  l +l+  +++pv LN++lyk+   +a ++d+ ++s++++ +++ a   ++ i + +W+  + +++
  CDO72204.1 374 LYAELASGAETGWDYSSRWMAQplaggSNNTTPALRSLNVREIIPVCLNSILYKAHGLLADLYDAQKNSASATAHRSTAASIRAGILDLFWDPTKLAFY 472
                 ********************9866533445566899*************************************************************** PP

                 -EETTTTEE----BGGGGHHHHCT-S-HHH CS
   Trehalase 361 DYdlkkkkqtnyesatnlvpLwaglaskeq 390
                 D++l ++ +++ ++a++++pLw g++ +e 
  CDO72204.1 473 DFNLTSNARSSLFTAATFYPLWNGIVPDEL 502
                 ************************999876 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2e-13
                 HHHHHHHHCTSEBSCEETTSTSTTBTT-SSSSTTCSBHHHHHHHHHHHC CS
   Trehalase 461 tvtkafsdegklvEKYdvtreaeygGgggeyvlqeGFGWvNgvvlelLe 509
                 +vt++ +++g+++EK+ +++  + g  ggey++q GFGW+Ngv l + +
  CDO72204.1 652 NVTQSVNNTGNMFEKFSISDIDSAG-RGGEYTVQAGFGWTNGVLLWVAS 699
                 578899999**********655555.*****************987655 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.8e-06     0.025      50     123 ..     226     296 ..     214     359 .. 0.86
   2 ?   -1.0   0.0     0.073   6.5e+02     164     219 ..     414     469 ..     389     505 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-06
       GDE_C  50 grfeeAreilltFaktlrh.GliPNlldegqealyntvdaslwlieaiekYleyagdaeilrriypvlqeilqky 123
                 ++f    + l++F + + h G iPN    g  ++y  + ++  +i+ +++Y+++++d++il+r++p  ++ l+++
  CDO72204.1 226 ELFSIVNDTLQNFVDEIEHfGFIPN----GGRIYYLDRSQPPLFIRMLSDYVSASNDTAILERALPLAEKELKWW 296
                 567777789999*9998877****9....789**********************************766655554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.073
       GDE_C 164 RdGkaveinaLwyaaLkileelaekalgeakkssykelaekikesfekkFwdeaaa 219
                 R+  +v +n++ y+a  +l+ l   + + a+++ +++ a+ i++     Fwd+++ 
  CDO72204.1 414 REIIPVCLNSILYKAHGLLADLYDAQKNSASATAHRSTAASIRAGILDLFWDPTKL 469
                 5556888999999999999999998999999999999**************97763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 4717.85
//
Query:       CDO72205.1  [L=566]
Description: hypothetical protein BN946_scf184970.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-08   34.2   0.0    4.4e-08   32.8   0.0    1.7  2  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    2.5e-08   34.1   0.1    5.4e-08   33.1   0.1    1.5  1  PWI              PWI domain
  ------ inclusion threshold ------
        9.8    6.4   6.0       0.71   10.1   0.8    1.7  2  Hydin_ADK        Hydin Adenylate kinase-like domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   7.4e-12   4.4e-08       1      64 [.      16      79 ..      16      83 .. 0.96
   2 ?   -3.8   0.0         2   1.2e+04      35      45 ..     219     229 ..     216     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 7.4e-12
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64
                lfVg ++  +t+  L e+++ +Gp +s+k   +  +k++gf+f eF++++ A +A+  lng +l
  CDO72205.1 16 LFVGSISGGITDAFLNEILKACGPLNSFKRLITPANKPQGFGFAEFQDPDGALRAMTLLNGVEL 79
                8***********************************************************9876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2
                 TTSEEEEEEEE CS
       RRM_1  35 tgkskgfafVe 45 
                 +g +k+++fV+
  CDO72205.1 219 QGYNKPVGFVR 229
                 67899****96 PP

>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1     9e-12   5.4e-08       2      67 ..     486     550 ..     485     553 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 9e-12
         PWI   2 vlkpWIakkitellg.feDdvvieyvlnlLeeekeldpkklqinltgfLekeaekFvkeLWelllsa 67 
                 +++p +++++t++lg  eDd +i +vl++L++  +  p+kl + l+ +Le+ea++Fv  +W+ ++ +
  CDO72205.1 486 KFEPLVKRQMTKYLGeLEDDDLIMFVLEHLKD--HKGPQKLVEGLEPVLEEEASEFVVSIWRQIIFE 550
                 578999********647*************88..7***************************99976 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.4       1.7     1e+04      56      67 ..     292     303 ..     254     312 .. 0.52
   2 ?   10.1   0.8   0.00012      0.71      46     124 ..     334     423 ..     327     457 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
   Hydin_ADK  56 aaieqaekekee 67 
                  a+e+a+ke+ee
  CDO72205.1 292 IARERAMKEAEE 303
                 233333333333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00012
   Hydin_ADK  46 GlrArelCaeaaieqaekekeeaaeeaekkegqlsvealvkktselssaaeekaas..............skiskkkktsvvsgkkkaesega 124
                  lrAr l ae a +++ +  ee ++e  +     s+  l++++ e+++ +ee++++              s ++  kkt++ +++k++ + g 
  CDO72205.1 334 TLRARRLAAEQAADEESRLYEEREAENLR---RESEAFLARQMDEMQQLQEEQRKAgmllddgapvklgvSLAAAVKKTETAPKEKASAVFGP 423
                 79*****9999988888887777666654...4678899999999999988877777889988988888866666677777766555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3564.75
//
Query:       CDO72206.1  [L=148]
Description: hypothetical protein BN946_scf184970.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1090.17
//
Query:       CDO72207.1  [L=1028]
Description: hypothetical protein BN946_scf184970.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-32  111.4  34.5    1.1e-20   73.7  15.4    2.4  2  ATP-synt_C  ATP synthase subunit C
      3e-28   98.5   0.0    5.3e-28   97.7   0.0    1.4  1  Sad1_UNC    Sad1 / UNC-like C-terminal


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5  11.1   3.3e-15     3e-11       2      60 .]      16      74 ..      15      74 .. 0.96
   2 !   73.7  15.4   1.2e-24   1.1e-20       1      60 []      91     150 ..      91     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.3e-15
                HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  2 gaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60
                g+  a++++++g+ +g++k g ++  +++++p+l++k +i++++a++ia+ygL+v++++
  CDO72207.1 16 GCTSAIVFTCIGASYGTAKSGVGISAMSVLRPDLMMKCVIPVIMAGIIAIYGLVVSVLI 74
                6778999*************************************************997 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 1.2e-24
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 lgagl+vGl++l++G++iG++g+ag+r++a++p+lf+++++il+fae+++lygLivali+
  CDO72207.1  91 LGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALIM 150
                 7*********************************************************97 PP

>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0     6e-32   5.3e-28       3     130 ..     278     403 ..     276     405 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 6e-32
                 EE-B-GGGGGSS-...-STT-SEEEESS-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSTT---...-EEEEEEE--TTS-SEEEEE CS
    Sad1_UNC   3 keakapkvilqed...yspgeCwsfkgsrgfvvieLseeiiveavtlehveksvapisSapKdfevsgskrypekk...wvllgefsydedgknaqtFe 95 
                 k+ak+p++il+++   y++++C    ++++fv++eL+e+i +++v+l+++e+    +s  +Kdf+v +sk+y  ++   w+  g+++ +++ + +q+F+
  CDO72207.1 278 KSAKNPSAILSSKkdrYMLSPC---AEKEQFVIVELCEDIRIDTVQLANYEF----FSGVFKDFTVRVSKTYYPNDpdsWTYAGTYR-AKNARGVQSFH 368
                 57899*****99999*******...78889**********************....***************99998999********.9********** PP

                 --TT----EEEEEEEE--BSS-SSEEEESEEEEEE CS
    Sad1_UNC  96 leeskdilvkyvkleilsnyGneeytclyrlrVyG 130
                   ++  ++++y+++++ s+yGne+y++l++lrVyG
  CDO72207.1 369 TPPTLRDFYRYIRIDFHSHYGNEYYCPLSLLRVYG 403
                 *****99***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 6843.96
//
Query:       CDO72208.1  [L=1068]
Description: hypothetical protein BN946_scf184970.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-78  262.0   0.0    1.3e-77  261.6   0.0    1.2  1  p450             Cytochrome P450
    2.7e-30  105.6   0.0    4.3e-30  104.9   0.0    1.3  1  FAD_binding_1    FAD binding domain
    4.9e-25   88.4   0.0    9.6e-25   87.5   0.0    1.5  1  Flavodoxin_1     Flavodoxin
    4.4e-10   40.2   0.0    9.1e-10   39.2   0.0    1.6  1  NAD_binding_1    Oxidoreductase NAD-binding domain
     0.0012   19.0   0.0     0.0034   17.5   0.0    1.8  1  Flavodoxin_NdrI  NrdI Flavodoxin like
  ------ inclusion threshold ------
       0.15   12.3   0.0       0.34   11.2   0.0    1.6  1  Flavodoxin_5     Flavodoxin domain
       0.18   11.5   0.0       0.32   10.7   0.0    1.4  1  Flavodoxin_3     Flavodoxin domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.6   0.0   4.9e-81   1.3e-77       2     460 ..       6     458 ..       5     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 261.6 bits;  conditional E-value: 4.9e-81
                 -SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH...HHHHH CS
        p450   2 pgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang...ekwkk 97 
                 p+p+++p++g++  +++ + + + l+ l+++yg+i++l + +++ ++ +++ +  e+   k+  f ++  +  l+  r    g g+++a+    + w  
  CDO72208.1   6 PSPPAVPFLGHINTIDK-DLPIRSLDLLARQYGEIYQLNVLGQKKIFANSYALQNELSDEKR--FLKK-VSGGLNEVR-NAAGDGLFTARVpeeKNWYI 99 
                 5667************6.677777*************************9999888877774..5554.666666644.78899999988766689*** PP

                 HHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH.......HHHCHH CS
        p450  98 lRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelss.......llskss 188
                  +++l+p +  + +   +++ + +++++lv k+++   ++ ++d++ ++++ +ld+i+ ++++ r++    +++ e+++++e+l+        +l  +s
  CDO72208.1 100 AHHLLMPCFSAS-SVyGMTNDMMDIISQLVLKWERFGPKA-VIDPSIDFTRLTLDAISLCAMSYRYG-TSPRSAVEAMALIEDLHPfavamvdFL-IES 194
                 ************.7779999999999**********9999.9*************************.555556677777777755444422133.346 PP

                 HHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 189 vqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLy 287
                  +  + +++++ ++t+++ k++e +++l++l+++++ ++r++  ++     d l+ +++ + +k+ +  lsde++++++l++l+aG++Tts  l+++ y
  CDO72208.1 195 GKRADRPNIVRSMMTSTNAKYEEDQRILAQLVNEILDDHRANPPEK----PDILSTMINGR-DKETGLGLSDENIKHNLLTFLIAGHETTSGMLTFTTY 288
                 667788889********************************99988....8*********8.6666679****************************** PP

                 HHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS-- CS
        p450 288 eLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFd 384
                 +L+knPe+++klreEid+ +gd r+ t  d++klpyl av +E++Rl p++p   + + ++d+vi+g yl++kGt +i+n+y  hrdp+v+ +++e+F+
  CDO72208.1 289 YLLKNPEAMRKLREEIDTKIGD-RPATVHDVNKLPYLLAVMRESMRLGPTAP-ARSVAPLEDTVIGGkYLVEKGTSIIINTYNAHRDPKVWgEDAEVFR 385
                 **********************.79***************************.88889999************************************** PP

                 GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSSSE CS
        p450 385 peRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkpik 460
                 peR ld k  +  ++ a+ PFG G R CiG+++A  e +l+l+t+Lq+F++ + ++ + + +l++  l+++p +++
  CDO72208.1 386 PERMLDGKF-EALPPNAWQPFGYGMRGCIGRPFAWQEAQLALITVLQRFDLVM-HDPTYELQLKQ-TLTIKPHNFY 458
                 ********9.66****************************************8.65666666665.3777776665 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   1.7e-33   4.3e-30      10     222 .]     686     887 ..     678     887 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 1.7e-33
                    EEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEHHHHHHHTB CS
  FAD_binding_1  10 lakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTlrqalkyyl 105
                    l +v +nr Lt+p++     h+e+ + + g++Y  Gd+l++ p N+e +V   l ++gl +  ++ +el + ++   ++ p+ +p+ +++++  y+
     CDO72208.1 686 LGTVIDNRVLTSPNAP-TKRHIEFALPE-GMTYRAGDYLAILPLNPERTVRRALARFGLSA--EQEIELSSGGP---TSLPVNKPVHIFAIFSGYV 774
                    5678899999997665.4469***9975.9*******************************..**********6...79***************** PP

                    --SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTTTTEEEEEE CS
  FAD_binding_1 106 ditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvhpdevhltv 201
                    ++  p + + +  L++  ++e + + L  L++d     yke++++++ ++l++lee+p ++lpl+ +l++lp ++ R YSiSss+  +p++v lt+
     CDO72208.1 775 ELSQPATMREIDILLKAKNSEASAEGLSELARD-----YKEKVFERRLSVLDILEEYPDIDLPLSTFLQMLPSMRIRQYSISSSPLWNPQHVTLTI 865
                    ******************************986.....********************************************************** PP

                    E--EE--.-SSS--EE-HHHHH CS
  FAD_binding_1 202 vVveyet.dgegrirkGvcsny 222
                     V + +   g  + + Gv+s+y
     CDO72208.1 866 SVIDAPAiSGRTEPFLGVASTY 887
                    ******9888888899****98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   3.8e-28   9.6e-25       1     143 []     507     641 ..     507     641 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 3.8e-28
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   +lYgS+tGn+e++A+++a ++  hgf+    s+  +d ++s+++++  l++vt+  ++G+p +n++ +f+++l++ +    d  l  v+favfg+G+
    CDO72208.1 507 VLYGSNTGNSESFAQRIASDAPVHGFR---ASMGTLDSAFSHLPQDGPLIIVTA-SYEGEPADNAA-HFVEWLTNLQ---GDHALAAVKFAVFGCGN 595
                   89************************5...8888888779**************.889********.9999999983...6789************* PP

                   TTSSS.TTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  98 sayen.FcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   + +++ ++ + + +d+ l ++Ga+rl+  +e d    ++  eaf++W
    CDO72208.1 596 RDWQKtYQRIPRLIDNTLAQRGATRLTDRGESDAGG-ADFFEAFDAW 641
                   ****************************99988877.7999999999 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   3.6e-13   9.1e-10       1     108 [.     920    1032 ..     920    1033 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.6e-13
                     EEEEGGGGHHHHHHHHHHHHHCT...TCSEEEEEEEESSGC.GSTT.HHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH.. CS
  NAD_binding_1    1 miagGtGiaPvrsvlraileeak...dktkvvlvyGnrtee.dlly.reeleelakklpgrlkvvavvsreeagweggkgrvqdalleells.. 87  
                     m ++G+G+aP+r++l++++++++      k  l++G+r+ + d ly  +el+e+  +  g + v ++ sr ++++ +g  +vqd+++ +  +  
     CDO72208.1  920 MFCAGSGLAPMRGFLQERAMQKQagrEVAKSLLFFGCRSPKeDYLYgDAELREW--SEMGVVDVRPAFSRSSDDS-EGCRYVQDRVRHDKPDvv 1010
                     88*****************9966788778999*******998887736799999..4445567888888888776.7888******88877798 PP

                     .HSSTTEEEEEECSHHHHHHHH CS
  NAD_binding_1   88 .lkkeethvyvCGppgMikavr 108 
                        + +  +yvCG+ + + +v+
     CDO72208.1 1011 rAFLMGGKFYVCGASKIASGVK 1032
                     8668999******999988876 PP

>> Flavodoxin_NdrI  NrdI Flavodoxin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0034       1      89 [.     507     604 ..     507     615 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
                      EEE--TT-HHHHHHHHH-S....-EEEE-SS.......TT--.---SS-EEEEEE--TTSSSSTS..S-HHHHHHHTSHHHHHCEEEEEEEE-G CS
  Flavodoxin_NdrI   1 vvysSlsgntkrFveklel....eaqriple.......ekeeelevdepyvlivptygegeekka..vpkqvieflnkeknrkllrGviasGnr 81 
                      v+y S +gn+++F ++++     +      +       ++ ++l  d p ++++ +y+++  ++a  + + +++   ++  ++   +v ++Gnr
       CDO72208.1 507 VLYGSNTGNSESFAQRIASdapvHGF----RasmgtldSAFSHLPQDGPLIIVTASYEGEPADNAahFVEWLTNLQGDHALAAVKFAVFGCGNR 596
                      78***************996543223....2334554444455999************998877656777777777777777788899****** PP

                      GGGGGTTH CS
  Flavodoxin_NdrI  82 nfgeqyal 89 
                       + ++y  
       CDO72208.1 597 DWQKTYQR 604
                      *****975 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.34       2      69 ..     507     574 ..     506     629 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Flavodoxin_5   2 ilYsSrdGqTkkiaeriaeelreegelvdvedvekesedlesydavvigasvyygkllpelakFvekh 69 
                   +lY S++G+++  a+ria     +g  +++  ++ +  +l +    +i+++ y g+   ++a+Fve  
    CDO72208.1 507 VLYGSNTGNSESFAQRIASDAPVHGFRASMGTLDSAFSHLPQDGPLIIVTASYEGEPADNAAHFVEWL 574
                   89****************************9998777777777889999999*************943 PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.32       2      68 ..     507     576 ..     506     611 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
  Flavodoxin_3   2 ilysSltGNTkkvAeaikealeeekeivsikeakek...veeadvvfvGfwvdkgtadeealkfletlkn 68 
                   +ly S+tGN ++ A+ i++ ++ +    s+++ +++   +++   +++ +  + g++ ++a++f+e l n
    CDO72208.1 507 VLYGSNTGNSESFAQRIASDAPVHGFRASMGTLDSAfshLPQDGPLIIVTASYEGEPADNAAHFVEWLTN 576
                   89*******************9977778888888877778888899999999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 7600.53
//
Query:       CDO72209.1  [L=471]
Description: hypothetical protein BN946_scf184970.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-77  260.5   0.0    3.3e-77  260.2   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.2   0.0   1.8e-81   3.3e-77       1     456 [.       6     442 ..       5     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: 260.2 bits;  conditional E-value: 1.8e-81
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkkl 98 
                 P++p  +pl+gn+  +++ + +++ l++l+kkyg+i+ l + + + vv+++  ++ ev   k   fs+++ e+ ++ ++ + +g   +     + w   
  CDO72209.1   6 PRPP-GVPLLGNVDAIDQ-NAPFQSLHDLAKKYGEIYELEMLGAKRVVINSQALMSEVSDEK--RFSKKIAENSTQLRNAAGDGLFTARLPEeKNWYIA 100
                 4555.9**********95.888888**********************************999..5999999999998776666666665556799**** PP

                 HHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH CS
        p450  99 Rrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp 196
                 +++l+p +  + k  +l + + +++++lv k+++    +  +d++ ++s+++ld+++ ++  ++f   ++   + +v++ + l++ +  ++      ++
  CDO72209.1 101 HNLLMPLFKPD-KIcNLADDMMDIVSQLVLKWQRLGPDA-IIDTAADVSRVTLDIVCLCAILNSFY--RETVHPFAVTMSDFLLEST--KR---GARPQ 190
                 *********99.66699999999999********99999.7**********************965..7776778999999995544..34...33333 PP

                 HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH CS
        p450 197 llkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPev 295
                  ++ l+   ++k+++ +k+l++++d+++ +rr+  +++     d l  l+  k +k+ ++ l ++ ++ ++l++l+aG++Tts  l +aLy+L+++Pe+
  CDO72209.1 191 AVQNLLVAENKKYEDDMKTLFKTTDEILAQRRALGSDK----QDILGTLMYGK-DKETGQGLPEKTIQYNLLTFLIAGHETTSGMLVFALYYLLTHPEA 284
                 45556788899999999*************99987777....8*********8.5554469************************************** PP

                 HHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TT CS
        p450 296 qeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldek 392
                 ++klr Eid++lg+ r +t +dl+ +pyl av +EtLRl+p++p   + + ++d+vi+g y i kG  +ivn+y+++rd +v+ ++++eF+peR ld k
  CDO72209.1 285 MRKLRDEIDTTLGG-RLFTTKDLNTMPYLIAVMRETLRLSPTAP-ARTVAPFEDTVIGGkYPIAKGESIIVNTYSCQRDRKVWgEDADEFRPERMLDGK 381
                 ************99.68***************************.77788999********************************************** PP

                 SCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEES CS
        p450 393 gnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllpp 456
                   +  +  a+ +FG G R+CiG  +A  e +++l+t++q+F++ + + + + +  ++  l+++p
  CDO72209.1 382 Y-DTLPRQAWQAFGYGERACIGGAFAWQEAQIALVTIFQQFDLAMADPNYKLTVKQT--LSIKP 442
                 9.56****************************************9766555555554..55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3385.74
//
Query:       CDO72210.1  [L=501]
Description: hypothetical protein BN946_scf184970.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-90  303.0   0.2    1.9e-90  302.5   0.2    1.2  1  ALG11_N          ALG11 mannosyltransferase N-terminus
    1.4e-25   89.8   0.0    2.8e-25   88.8   0.0    1.5  1  Glycos_transf_1  Glycosyl transferases group 1
    3.5e-12   46.9   0.0      1e-11   45.4   0.0    1.7  2  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0001   22.4   0.0    0.00021   21.4   0.0    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00061   18.6   0.0    0.00096   17.9   0.0    1.2  1  Glyco_transf_20  Glycosyltransferase family 20
     0.0058   17.0   0.0      0.013   15.9   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.064   12.7   0.0       0.11   11.9   0.0    1.3  1  ABC_transp_aux   ABC-type uncharacterized transport system


Domain annotation for each model (and alignments):
>> ALG11_N  ALG11 mannosyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.5   0.2   7.5e-94   1.9e-90       2     208 ..      48     254 ..      47     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 302.5 bits;  conditional E-value: 7.5e-94
     ALG11_N   2 kivgffHPycnaggGGErVLwaavkalqkekkkvkivvYtgdlevskeeilekvkerfnieldkkrikfvaLkkrklveaktyprfTLlgqslgsvlla 100
                 ki+gffHPycnaggGGErVLwaa++alq+++++v+ vvY+gd++++ke+i++kvk rf+iel++++++fv+L++r+lve++++prfTLlgqslgs++la
  CDO72210.1  48 KIIGFFHPYCNAGGGGERVLWAAISALQRKEPEVVAVVYSGDTDATKEKIIDKVKARFDIELSPTTLHFVFLQSRHLVEDSAWPRFTLLGQSLGSMWLA 146
                 79************************************************************************************************* PP

     ALG11_N 101 leallklvpdvfidtmGyaftyplvkllagvkvvaYvHYPtistdmlkrvkereakynnkeavakskllsllkllYyklfallYslvgsladvvmvnss 199
                 +ea++ l+pd+fidtmGyaft+p+v+l+ +++v+aYvHYPtist ml+rv++r++ ++n+e++++s+ll++ kllYy++f+++Y +  ++a ++mvns+
  CDO72210.1 147 YEAMTFLIPDLFIDTMGYAFTFPVVSLVGNIPVGAYVHYPTISTTMLSRVRSRSQGVTNSEVISSSALLTYGKLLYYRIFMYYYAYSLRQARFLMVNST 245
                 *************************************************************************************************** PP

     ALG11_N 200 WTknhiksl 208
                 WTknh++s+
  CDO72210.1 246 WTKNHVDSI 254
                 ******987 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   1.1e-28   2.8e-25       9     170 ..     301     474 ..     294     476 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 1.1e-28
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC...HCSCEEEEEES.......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCE CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkq...lnpnvklviaG......ngeeekelkklaeelelsdnviflgevsredleellkna 93 
                      +++ ++++iils++++++eK++   ++af++l +     +  v+lv++G      + ++ ++l+ la el+++d+v+f+ + s+ ++  +l++a
       CDO72210.1 301 SPLEGRERIILSIAQFRPEKDHPAQLRAFHKLLELypeYRGSVQLVLIGgsrnvdDATRVENLHMLARELGIRDHVQFVVNASYAEVLRWLSRA 394
                      5677899**************************99988888999**********9999************************************ PP

                      SEEEEEESSBSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT...SEEEE-TT-HHHHHHHHHHHHHSH.HHHHHHHHHHH CS
  Glycos_transf_1  94 difvlpsisEgfGivllEAmaaglpviasn.aggpaevvkdge...tGllvkpnnaealaeairkllede.elrerlgenar 170
                      +i + ++  E+fGi+++E maag++ +a++  g++++++++     tG++  ++  e++aea+r +l+ + e   +l+++ar
       CDO72210.1 395 SIGLSTMVDEHFGINIVEFMAAGVIPVAHAsGGPLLDIIVPLNgepTGYHATTP--ETFAEAFRTVLTLPkEAELALRQRAR 474
                      ******************************777779****99999*****9999..**************655556666666 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.8   7.2e+03      20      46 ..      67      97 ..      63     117 .. 0.56
   2 !   45.4   0.0     4e-15     1e-11       2     132 ..     308     459 ..     307     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.8
                     HHHHHHHHH.HH...EEEEEES---...HHH CS
  Glyco_trans_1_4 20 lleavpllrkkd...vrlvivGdgp.rpeel 46
                     l  a+ +l++k+   v +v  Gd +  +e++
       CDO72210.1 67 LWAAISALQRKEpevVAVVYSGDTDaTKEKI 97
                     5667766665533555566666554433333 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 4e-15
                      EEEEEES---GG.GTHHHHHHHHHHHH.H.H.....EEEEEES---.........HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkk.d.....vrlvivGdgprp.......eeleelaa..gleerveftGfv..edlaellaaadvfva 78 
                      ++il + ++ +++k +   l+a+++l++  +     v+lv++G++ r+       e+l+ la+  g++++v+f+     +++ ++l++a++ + 
       CDO72210.1 308 RIILSIAQF-RPEKDHPAQLRAFHKLLELyPeyrgsVQLVLIGGS-RNvddatrvENLHMLARelGIRDHVQFVVNAsyAEVLRWLSRASIGLS 399
                      578899999.55599999999997777333134578*******54.333456666777766657999*******9998899************* PP

                      --..---SHHHHHHHHTT-EEEE-TGGG.TTT--.....TTSSEE--TT-HHHHHHHHHHHH CS
  Glyco_trans_1_4  79 Ps..egfglkllEamaaglpvVatdvgg.iaevv.....gengllvppgdpealaeailrLl 132
                      ++  e fg+ ++E maag+  Va + gg + +++     + +g+ +    pe +aea  ++l
       CDO72210.1 400 TMvdEHFGINIVEFMAAGVIPVAHASGGpLLDIIvplngEPTGYHAT--TPETFAEAFRTVL 459
                      ***99*********************984588888887436789887..9*******99887 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   8.1e-08   0.00021       2     150 ..      61     253 ..      60     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 8.1e-08
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev.......................elvvrvprvplpllkrllrslaflrrlrrllkrekp 73 
                     GG er+++  + aL+r+  eV+ v+ ++d ++ +e                           + v+   +p +  l++sl +++ + +++    p
      CDO72210.1  61 GGGERVLWAAISALQRKEPEVVAVVYSGDTDATKEKiidkvkarfdielspttlhfvflQSRHLVEDSAWPRFTLLGQSLGSMWLAYEAMTFLIP 155
                     9*******************988865555555555558999***************9996667777777788889999999999999999999** PP

  Glyco_transf_4  74 DvvHahspaalgaallalrrrlgiplVltvHglye.......................krllkarlkplsrllralerrllrradrviavSeata 145
                     D+    + +a+ + ++ l    +ip+ ++vH +                         + ll + + +++r++ +++++ lr+a+ + ++S +t+
      CDO72210.1 156 DLFIDTMGYAFTFPVVSLV--GNIPVGAYVHYPTIsttmlsrvrsrsqgvtnsevissSALLTYGKLLYYRIFMYYYAYSLRQARFLMVNSTWTK 248
                     ***7777777778888888..7***********************************87777778888888999999999*************** PP

  Glyco_transf_4 146 delre 150
                     +++ +
      CDO72210.1 249 NHVDS 253
                     99876 PP

>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.7e-07   0.00096     272     321 ..     303     352 ..     292     385 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.7e-07
                      T.TTSEEEEEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB- CS
  Glyco_transf_20 272 fenkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavps 321
                      +e++ ++il+  ++   k  + +l+af ++Le ype+rg v lv i  + 
       CDO72210.1 303 LEGRERIILSIAQFRPEKDHPAQLRAFHKLLELYPEYRGSVQLVLIGGSR 352
                      567789**************************************997543 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.1e-06     0.013       1      83 [.     396     483 ..     392     486 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.1e-06
  Glyco_trans_1_2   1 ivLnpsrsespnlrlfEaaacGafaltdda..egleelftpgkevilfe..dleelaekiryllanpeerr.aiaeaarervlaehty 83 
                      i+L +  +e +   ++E +a+G++ ++ ++  + l+ ++  + e   ++  ++e +ae++r +l+ p+e++ a++++ar ++ ++++ 
       CDO72210.1 396 IGLSTMVDEHFGINIVEFMAAGVIPVAHASggPLLDIIVPLNGEPTGYHatTPETFAEAFRTVLTLPKEAElALRQRARTWAVQKFSA 483
                      567777778899999*************88988888888888888888888******************9989999999998888776 PP

>> ABC_transp_aux  ABC-type uncharacterized transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05      0.11      92     180 ..      29     108 ..      15     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
  ABC_transp_aux  92 isveekdelktkrvymglvieygdkeetipllkn..tsesnlEyeltsairkltdkkkpkvgfl.tghgelslsspseadfleeleenYnve 180
                     i+++        +++  l +e   k+++i ++++  + +   E  l +ai++l++k++ +v+++ +g  +++       ++++++++++++e
      CDO72210.1  29 IQQR-------AKLFGILGAEDAHKKKIIGFFHPycNAGGGGERVLWAAISALQRKEPEVVAVVySGDTDATK-----EKIIDKVKARFDIE 108
                     3333.......5666666677888999*********888889********************99677776665.....35999**9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3328.51
//
Query:       CDO72211.1  [L=434]
Description: hypothetical protein BN946_scf184970.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3098.98
//
Query:       CDO72212.1  [L=638]
Description: hypothetical protein BN946_scf184970.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-10   38.6   5.2    1.4e-09   38.0   5.2    1.2  1  Tetraspanin  Tetraspanin family


Domain annotation for each model (and alignments):
>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   5.2     8e-14   1.4e-09      10     228 ..     362     549 ..     358     550 .. 0.72

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 8e-14
                  XXXXXXXXXXXXXX..XXXXXXXX.....................XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--H CS
                  xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  10 llfwligivllavG..vwlrlkhaeaalacllsesaedpailaillivvGv.llfllgflGcigalkenkcllltfsllllvlfllelaagilgfvfs 104
                  l++ ++++++++ +  + ++l    a+++++  +   d + l  ++i +++ +l++++++G+ g+l +++ +l+++ lll   fl +l++g   +  s
   CDO72212.1 362 LVLSVCSVLVYGTAglICAILTWFRAWNSAD-VMYVADYDLL--VFITLSAsILLFTALIGFSGTLLNSRPILAVYGLLLWPAFLSLLVVGYTSYKRS 456
                  4455666666665433333333344444444.4445555555..477777769999********************************9777665555 PP

                  HH........HHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SSHH..HHGSSTT-SSSCGCC..................S--HHHHHHHHC--XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin 105 dkargkvseiinnaievkyrddldlkkcqnlldslqkklsCCGvnsykDwsdnpsrencsvPesCclptpnqayleasksiytegCidklvnwiksnl 202
                            ++++++  + ++            +q+ l+CCG+ s          ++  + +sC  +tp              gC+ kl ++ + nl
   CDO72212.1 457 AF-------ALDRKLNLAWSQWYT----PLGRRVIQDALRCCGFYS--AL------HEAAPSKSCYPRTPL------------PGCKGKLWRFERANL 523
                  55.......477777666666644....4677899********944..33......556677899999985............7************** PP

                  XXX.XXXX.XXX.XXXXXXXXXXXXXX CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Tetraspanin 203 kllgggvaalgl.iqlvgillslilcc 228
                   l+ +g ++ ++ +++++i++sl+ ++
   CDO72212.1 524 ALI-WGTVFSLVpVHILNIFVSLLCAN 549
                  ***.66665666699999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4626.63
//
Query:       CDO72213.1  [L=324]
Description: hypothetical protein BN946_scf184970.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-38  133.0   0.0    1.1e-18   67.5   0.0    2.0  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    9.1e-10   39.0   0.5    6.6e-07   29.8   0.0    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    7.1e-08   32.0   0.1     0.0039   16.5   0.0    3.0  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    7.9e-06   25.3   0.0    5.7e-05   22.5   0.0    2.0  2  Thi4            Thi4 family
    1.6e-05   24.2   1.5     0.0026   16.9   0.1    2.3  2  FAD_binding_2   FAD binding domain
    3.5e-05   23.6   0.0    0.00011   21.9   0.0    1.6  2  DAO             FAD dependent oxidoreductase
    3.9e-05   22.9   1.1     0.0047   16.1   0.1    3.1  4  GIDA            Glucose inhibited division protein A
     0.0012   18.3   0.1     0.0074   15.7   0.1    2.0  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0015   18.7   0.0     0.0037   17.5   0.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.031   13.5   0.0    1.3  1  FAD_binding_3   FAD binding domain
      0.019   13.7   0.4      0.043   12.5   0.4    1.6  1  HI0933_like     HI0933-like protein
      0.024   13.5   0.0      0.052   12.4   0.0    1.5  2  Trp_halogenase  Tryptophan halogenase
      0.084   12.5   0.3         18    4.9   0.1    3.0  3  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   1.1e-20   1.5e-17       2     134 ..      20     161 ..      19     169 .. 0.89
   2 !   67.5   0.0   8.1e-22   1.1e-18     161     292 ..     173     302 ..     168     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.1e-20
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvkl 87 
                  +vv+iG+GpAG++aa++la+a+++ +l+e   ++g   +g+   ++ +++++++++ ++            ++l+ g + +++ +v k+d  ++ + +
   CDO72213.1  20 KVVIIGSGPAGHTAAIYLARANLNPVLFEgfmANGFAAGGQLTTTTDVENFPGFPSGILgpelmekfrA--QSLRFGTKIITE-TVSKVDLSARPFRY 114
                  8***************************99*888888999999999***************77766532..466666665555.8************* PP

                  TEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  88 ekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsae 134
                    + ++d+e  ++d l++AtG+s+++l+++G+  +++ ++++++ ++
   CDO72213.1 115 WREFQEDQEPETADCLIIATGASAKRLHLKGEDIYWQSGISACAVCD 161
                  ********************************888888888888776 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 8.1e-22
                  HHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHT.TEEEEESCEEEEEEETTE.....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 161 laklgkevtlveardrllraldkelsaaleealeke.Gvevklgtsvkeidgnge.....kle.vvledgeeidadlvvvavGvrpstelleeklgle 251
                  l+k+g++v+++ +r +l       +s++++++l  + ++++ ++t+++e +g+g+     +++ v +++++ +++  +++a+G +p t+l+  + +l+
   CDO72213.1 173 LTKYGSHVYVLVRRGELR------ASKIMQKRLMSNpKITILWNTVAVECQGDGDllnnlRIKnVLTGEEKDLPVNGLFYAIGHEPATQLV--RGQLQ 262
                  7899*******9999996......9******************************999776779**************************5..99*** PP

                  EEETTEEE--TTS.BESSTTEEE-GGGCTECCSS--HHHHHH CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 252 lderggivvdefl.rtnvpgiyaiGDvaggkggpelaqaAvq 292
                  +d++g+iv+ +   +t+v+g++a+GDv+  ++++++a ++  
   CDO72213.1 263 TDPDGYIVTVPGTtQTSVKGVFAAGDVQ--DKRYRQAITSAG 302
                  *******7665554**************..777777776655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0078        11       1      23 [.      20      42 ..      20      49 .. 0.86
   2 !   29.8   0.0   4.8e-10   6.6e-07      18      76 ..     173     226 ..     171     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0078
                EEEEECSSHHHHHHHHHHHHTTS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgk 23
                kvv++G+G  g  +A +la+ + 
  CDO72213.1 20 KVVIIGSGPAGHTAAIYLARANL 42
                79****************98765 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 4.8e-10
                 HHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox  18 laelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesv 76 
                 l+++g++V+v++r+ +l+      aski+q++l  n +i++l+nt+++e +g++d ++ +
  CDO72213.1 173 LTKYGSHVYVLVRRGELR------ASKIMQKRLMSNpKITILWNTVAVECQGDGDLLNNL 226
                 89****************......****************************99865555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00014      0.19       1      24 [.      22      45 ..      22      55 .. 0.88
   2 ?    0.8   0.0      0.16   2.3e+02     118     147 ..     120     147 ..      81     156 .. 0.79
   3 !   16.5   0.0   2.8e-06    0.0039     182     305 .]     172     287 ..     169     287 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledy 24
                 +IiG GPaG +aai l +a+l+ +
   CDO72213.1 22 VIIGSGPAGHTAAIYLARANLNPV 45
                 7********************654 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.16
  Pyr_redox_3 118 tsketyeAkkviiAtGefdkPnklnipGee 147
                   ++e  +A+ +iiAtG     ++l+ +Ge+
   CDO72213.1 120 EDQEPETADCLIIATGA--SAKRLHLKGED 147
                  45666788999999998..77777888876 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 2.8e-06
  Pyr_redox_3 182 elvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslf 279
                  +l ++g++V v++r+ e+++++   +     + ++++  l+++ +++   +   + +++  +  +v t ++k + v +  ++a+G +p +++++  ++
   CDO72213.1 172 DLTKYGSHVYVLVRRGELRASKIMQKRL---MSNPKITILWNTVAVECQGD--GDLLNNL-RIKNVLTGEEKDLPV-NGLFYAIGHEPATQLVR-GQL 261
                  6788999999999998888875333322...22333333333222333333..2233322.233555667677777.7789**********999.899 PP

  Pyr_redox_3 280 eldedgrpvlteeteetnvpglflaG 305
                  ++d dg++v  + t +t v+g+f aG
   CDO72213.1 262 QTDPDGYIVTVPGTTQTSVKGVFAAG 287
                  999*********************99 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.1e-08   5.7e-05      16      63 ..      17      61 ..      13      69 .. 0.86
   2 ?   -0.0   0.0      0.31   4.3e+02      89     122 ..     180     215 ..     168     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.1e-08
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                + s vvi+G+G++G taa yla++ +l+ +++e  ++ G     GGql
  CDO72213.1 17 MHSKVVIIGSGPAGHTAAIYLARA-NLNPVLFEGFMANG--FAAGGQL 61
                6799********************.*********99976..5567776 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.31
                 SEEEESEHHHHHHHHHHHHH.TSTTEEEE.ESEEEE CS
        Thi4  89 dyvvvkdaalftstllskvl.qlanvkll.navave 122
                  yv+v+   l  s+++ k l   + + +l n+vave
  CDO72213.1 180 VYVLVRRGELRASKIMQKRLmSNPKITILwNTVAVE 215
                 588999999999999987651556665543677776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.9e-06    0.0026       2      43 ..      21      59 ..      20      69 .. 0.83
   2 !    6.8   0.1    0.0023       3.1     351     406 ..     236     294 ..     118     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqG 43
                   v++iGsG AG +AA+ +a+a+l+ ++ e   +   + ++++G
     CDO72213.1 21 VVIIGSGPAGHTAAIYLARANLNPVLFEGFMA---NGFAAGG 59
                   9*********************9999887666...5555555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0023
                    TTTSEEE.......EEEEEEEES-EEEBETTSBE...STTEEESSBTEEE-STCEESSS CS
  FAD_binding_2 351 padrpipgpfyavkvvpaqhytmgGvetdengrv...ldadgqpipGLYAaGevaaggv 406
                    ++d p+ g fya+   pa+    g ++td++g      + +++ ++G +AaG v    +
     CDO72213.1 236 EKDLPVNGLFYAIGHEPATQLVRGQLQTDPDGYIvtvPGTTQTSVKGVFAAGDVQDKRY 294
                    34445558999999999999999********9887779999***********9975555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.9e-08   0.00011       1      91 [.      20     134 ..      20     157 .. 0.82
   2 !    5.6   0.0    0.0072        10     155     207 ..      89     141 ..      70     198 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.9e-08
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH...............................HHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas...............................elarlsleale 66 
                 +vviiG+G +G ++A +Lar++   +l+e       +   +++g+l+    + ++                                  +++ls++ ++
  CDO72213.1  20 KVVIIGSGPAGHTAAIYLARANlnPVLFEGF-M---ANGFAAGGQLTTTT-DVENFPgfpsgilgpelmekfraqslrfgtkiitetvSKVDLSARPFR 113
                 59*****************99899*****98.4...45899999999976.355433567889999**********************999******** PP

                 HHHHHHHHHSSTTSEEEEEEEEEES CS
         DAO  67 elreleeelgididyrrtGllslaa 91 
                 ++re++e+++++       +l++a+
  CDO72213.1 114 YWREFQEDQEPE----TADCLIIAT 134
                 *******98864....455566654 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0072
                 HHHHTT-EEEESECEEEEEEEE..TCEEEEE..EECTEEEEEEEEEEE--GGGHHHH CS
         DAO 155 aaealGveilegtevtgleeed..gkvwgve..rttpgendaadavVnaaGawsdll 207
                 +  + G +i+++ +v +++      + w+ +  +++p+   +ad++++a+Ga ++ l
  CDO72213.1  89 QSLRFGTKIITE-TVSKVDLSArpFRYWREFqeDQEPE---TADCLIIATGASAKRL 141
                 444446677776.5555533211123344443211113...3688888888887633 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.4e-06    0.0047       1      28 [.      20      47 ..      20      78 .. 0.82
   2 ?   -1.2   0.0       0.6   8.3e+02     134     158 ..     120     143 ..      96     154 .. 0.68
   3 ?   -2.7   0.0       1.7   2.3e+03      98     118 ..     192     212 ..     186     219 .. 0.87
   4 ?    3.8   0.1     0.018        25     352     391 ..     278     318 ..     271     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.4e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                +v++iG G AG  AA+ +ar++++ +L+
  CDO72213.1 20 KVVIIGSGPAGHTAAIYLARANLNPVLF 47
                69*********************99998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.6
                 TTS-EEEECEEEE--TT-BT-EEEE CS
        GIDA 134 edgetikakavviatGtflkgkihi 158
                 ed+e  +a++ +iatG+ ++ + h+
  CDO72213.1 120 EDQEPETADCLIIATGA-SAKRLHL 143
                 55555677899*****9.5555554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
                 HHHHHHHHHTSTTEEEEES-E CS
        GIDA  98 skevteklenepnleiieeev 118
                 sk ++++l ++p+++i+ ++v
  CDO72213.1 192 SKIMQKRLMSNPKITILWNTV 212
                 7889***********998776 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.018
                 BSSSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHHCTS CS
        GIDA 352 tkkvkgLflAGqinGteGYeEa...aaqGllAGinaarkakgk 391
                 t +vkg+f+AG++     Y  a   a++G++A++ a r ++++
  CDO72213.1 278 T-SVKGVFAAGDVQDKR-YRQAitsAGSGCMAALEAERLIAEE 318
                 4.499*********998.866522267*********9998876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.3e-06    0.0074       2      40 ..      21      63 ..      20     105 .. 0.83
   2 ?    0.1   0.0      0.28   3.8e+02      90     126 ..     192     229 ..     168     240 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLve....ergvlGGllts 40
                  vv++G+gpaG +AAi  ara  + +L e    +    GG+lt 
    CDO72213.1 21 VVIIGSGPAGHTAAIYLARANLNPVLFEgfmaNGFAAGGQLTT 63
                  9*************************99555344446777765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
  FAD_oxidored  90 kavleeml.aeagvtvllntrlvevekegkriesvtve 126
                    +++++ l +++++t+l nt++ve++ +g+ ++ ++++
    CDO72213.1 192 SKIMQKRLmSNPKITILWNTVAVECQGDGDLLNNLRIK 229
                   445555444999**********9999987445544443 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.7e-06    0.0037       1      38 [.      23      64 ..      23      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.7e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-..SSSS..SSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvllle..krdr..lGGraasy 38
                   I+G+G +G +aA +La+a+++ +l+e  ++++   GG++++ 
     CDO72213.1 23 IIGSGPAGHTAAIYLARANLNPVLFEgfMANGfaAGGQLTTT 64
                   9************************93323332255666655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.2e-05     0.031       3      23 ..      20      40 ..      18      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
                   EEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLsea 23
                   +V+I+G+GpaG ++a  L++a
     CDO72213.1 20 KVVIIGSGPAGHTAAIYLARA 40
                   8*****************997 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   3.1e-05     0.043       2      31 ..      20      49 ..      19      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 +v++iG G+AG  aAi +a+++ + +l+e 
   CDO72213.1 20 KVVIIGSGPAGHTAAIYLARANLNPVLFEG 49
                 79*******************999999985 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.8e-05     0.052       1      22 [.      20      41 ..      20      47 .. 0.92
   2 ?   -2.5   0.0       1.3   1.7e+03     361     409 ..      84     131 ..      49     165 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.8e-05
                    EEEEE--SHHHHHHHHHHHHHT CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakal 22
                    k+vi+G G+aG +aA++la+a 
      CDO72213.1 20 KVVIIGSGPAGHTAAIYLARAN 41
                    79*****************985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                     HHHHHHHHHHHHHHHHHHHHHHHT----SSHHHHHHCTS---HHHHHHH CS
  Trp_halogenase 361 aefnrevarelervrdfiilhYkatkredtpfWralreleipdelkekv 409
                     ++f ++  r  +++    ++  ++++r    +Wr+ +e + p++    +
      CDO72213.1  84 EKFRAQSLRFGTKIITETVSKVDLSARPF-RYWREFQEDQEPETADCLI 131
                     55555544444444444444444444443.5777777777776655444 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.013        18       1      26 [.      21      46 ..      21      55 .. 0.89
   2 ?   -0.3   0.0      0.56   7.7e+02      55      76 ..     106     134 ..      77     141 .. 0.65
   3 ?    3.6   0.0     0.034        47      16      61 ..     172     217 ..     169     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
                EEEES-SHHHHHHHHHHHHHTHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtl 26
                ++i+G+G  G + a +La+a+ +++l
  CDO72213.1 21 VVIIGSGPAGHTAAIYLARANLNPVL 46
                68*****************8887665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.56
                 CEEECCH.......SCCCCS-ESEEEE-S CS
        ApbA  55 pealsae.......ekselepidlvivtv 76 
                 + ++++        e++e e +d +i+++
  CDO72213.1 106 DLSARPFrywrefqEDQEPETADCLIIAT 134
                 33333335555567889999******998 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.034
                 HHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCH CS
        ApbA  16 kLakagadvtlilrsrrlealkknGlrltseggeeilrppealsae 61 
                  L+k g +v++++r+ +l a k    rl s+ + +il++++a++++
  CDO72213.1 172 DLTKYGSHVYVLVRRGELRASKIMQKRLMSNPKITILWNTVAVECQ 217
                 6889999*******999***********************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2519.11
//
Query:       CDO72214.1  [L=444]
Description: hypothetical protein BN946_scf184970.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.6e-110  367.2   0.0   9.3e-110  366.9   0.0    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    0.00021   20.4   0.2    0.00066   18.8   0.2    1.7  2  IMPDH         IMP dehydrogenase / GMP reductase domain
      0.002   17.5   0.0        1.9    7.7   0.0    2.5  3  ThiG          Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
      0.032   13.4   0.2      0.047   12.8   0.2    1.2  1  Glu_synthase  Conserved region in glutamate synthase


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.9   0.0  2.1e-113  9.3e-110       7     343 ..      60     434 ..      52     438 .. 0.89

  Alignments for each domain:
  == domain 1  score: 366.9 bits;  conditional E-value: 2.1e-113
                 HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS-HHHHH CS
      FMN_dh   7 kkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvastsleeva 105
                 +  f +v g ag++ t+r+nraaf +++++pr+lrdv+++++ t+l+G ++++P++iaP+g+++++h+dgela+araaak++ip++ls ++s s+e+va
  CDO72214.1  60 PGSFTFVFGNAGSGETYRNNRAAFTKWQIVPRMLRDVTHRSIDTKLFGVTHPAPLIIAPLGVQGILHADGELATARAAAKLEIPMILSGASSRSIEAVA 158
                 36899********************************************************************************************** PP

                 HHHT.T-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT-.-BSTT-T.G.TTGGGSTSGSCCTTH................. CS
      FMN_dh 106 aaae.gplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngf.slppklklrnllqelakpewaaeal................. 185
                 +a++ g++wfqly+p ++e+t +ll ra++ gy+ lv+t+Dt+  g+R +d+++ f  +  +++++ +l+  a  + +                     
  CDO72214.1 159 QANGdGHRWFQLYWPINDEITLSLLSRAKNNGYSGLVVTLDTMAIGWRPHDVDSAFlPFAHSIGVQVALSDPAFMKLQ---Glepnaadeitefpynpa 254
                 *76636************************************************764444456655544444444443...2344789999******** PP

                 ................THHHHHHCCCHB-TC-.-HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHH..... CS
      FMN_dh 186 ..............kkasaaaefvgkqldpsl.twddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpei..... 264
                               + ++ a+++ ++ ++ ++ twd+++ lre++++pl++KG+l++eda++a++ G+dgivvSNHGGRq+dg+++++ +L +i     
  CDO72214.1 255 kfdelyvkgdektrRGVQLASAWGQQAVNGTFrTWDQLAFLRENWQGPLILKGILSPEDAELAIDNGADGIVVSNHGGRQVDGSISSLLALERImqspk 353
                 ********98765444444447777777777789*********************************************************88888777 PP

                 ..HHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHC CS
      FMN_dh 265 ..veavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldr 343
                   ++++ g++++l+D+G r+G+D+++A+alGA+a+llGR ++y+l ++G+eGve +++ l a++e t+ l G++s+ae++ 
  CDO72214.1 354 vrAAQASGKLTILFDSGTRSGADIFRAIALGAQAILLGRTYAYALTIAGQEGVEAYIKSLLADFELTLGLSGFRSIAEIQG 434
                 55445557**********************************************************************985 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   1.5e-07   0.00066     153     240 ..     308     395 ..     285     404 .. 0.74
   2 ?   -1.8   0.0      0.26   1.2e+03     298     329 ..     405     436 ..     397     441 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-07
                 E-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 153 vataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGslla 240
                 + + e a+  i++gad++ v    G      + + +   ++    +v +a+++ + +++ D G ++  di +A+a+Ga+a++lG+  a
  CDO72214.1 308 ILSPEDAELAIDNGADGIVVSNHGGRQVDGSISSLLALERIMQSPKVRAAQASGKLTILFDSGTRSGADIFRAIALGAQAILLGRTYA 395
                 55666667777777777777766665555555555566666666666677777789****************************9987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.26
                 -HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 298 svkevveqlvgglrsgmgylGaktieelkeka 329
                  v+++++ l+++   ++g  G ++i+e++ ka
  CDO72214.1 405 GVEAYIKSLLADFELTLGLSGFRSIAEIQGKA 436
                 58899999999****************99876 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.1     5e+03     123     167 ..     190     233 ..     186     235 .. 0.70
   2 !    7.7   0.0   0.00043       1.9     163     204 ..     288     328 ..     273     334 .. 0.88
   3 !    7.0   0.0   0.00073       3.3     171     209 ..     358     396 ..     344     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
                 T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHH CS
        ThiG 123 GFevlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnkeal 167
                 G++ l+ + d + +  r ++v  +a +P+a  iG    l++++++
  CDO72214.1 190 GYSGLVVTLDTMAIGWRPHDVD-SAFLPFAHSIGVQVALSDPAFM 233
                 6666666666666666666765.4678999999999888887766 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00043
                 -HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 163 nkealkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 +  +l +++e+ + P+i+  Gi sp+da  a++ Gad++++ 
  CDO72214.1 288 TWDQLAFLRENWQGPLILK-GILSPEDAELAIDNGADGIVVS 328
                 55689999********995.******************9985 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00073
                 HHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHT CS
        ThiG 171 ieeakvPvivDAGigspsdaaqamelGadavllntavae 209
                  ++ k+ ++ D G +s  d+  a+ lGa+a+ll  + a 
  CDO72214.1 358 QASGKLTILFDSGTRSGADIFRAIALGAQAILLGRTYAY 396
                 45558899************************9876665 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2     1e-05     0.047     266     305 ..     354     393 ..     321     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
                   HHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHH CS
  Glu_synthase 266 lkeeglrdrvsliadGglktgadvvkalalGAdavgigta 305
                   +++ +   ++++  d g ++gad++ a+alGA+a+ +g++
    CDO72214.1 354 VRAAQASGKLTILFDSGTRSGADIFRAIALGAQAILLGRT 393
                   5666777899999**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.37s 00:00:01.01 Elapsed: 00:00:00.57
# Mc/sec: 2341.98
//
Query:       CDO72215.1  [L=163]
Description: hypothetical protein BN946_scf184970.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1084.34
//
Query:       CDO72216.1  [L=389]
Description: hypothetical protein BN946_scf184970.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-91  307.4   0.0    1.5e-91  307.1   0.0    1.1  1  FMN_dh        FMN-dependent dehydrogenase
     0.0016   17.5   0.1     0.0033   16.5   0.1    1.4  2  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
      0.011   14.8   0.1      0.019   14.2   0.1    1.3  1  Glu_synthase  Conserved region in glutamate synthase
       0.13   11.6   2.2         12    5.1   0.0    3.1  4  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.1   0.0   3.3e-95   1.5e-91       7     298 ..      51     380 ..      43     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 307.1 bits;  conditional E-value: 3.3e-95
                 HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS-HHHHH CS
      FMN_dh   7 kkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvastsleeva 105
                 + af yv g ag+  t+++nr+++++++l+pr lrdv++++++tt++Gqk+++P+++aP+g+++++h+++ela+a aa+++g+p++lst+as s+e+va
  CDO72216.1  51 EDAFLYVFGNAGTDETFHDNRKELSKWKLVPRQLRDVTHRSIETTIFGQKYPSPLFLAPIGVQGIVHREAELATAAAARELGVPMILSTAASRSIEAVA 149
                 4799*********************************************************************************************** PP

                 HHHT.T-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT-.-BSTT-T.G.TTGGGSTSGSCCTTH................. CS
      FMN_dh 106 aaae.gplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngf.slppklklrnllqelakpewaaeal................. 185
                 +a++ g++wfqly+p + e+t +llkra++ gy++lv+t+Dt+ lg+R +d+++ +  +  +++   +   l++p  ++++                  
  CDO72216.1 150 QANGtGQRWFQLYWPLNPEITLSLLKRAKENGYTTLVVTLDTMSLGWRPHDIDTAYlPFYHAVG---AQIGLTDPVFMKGFGmepfahddvpefpydpa 245
                 *76636************************************************5535555566...44455555555555555679************ PP

                 ...............THHHH......HHCCCHB-TC-.-HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHH CS
      FMN_dh 186 .............kkasaaa......efvgkqldpsl.twddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpei 264
                              +     +      e+v+++ +    twd+++ +r+++++plv+KGvl++eda++a++aG+dgivvS HGGRq+dg+++++ +L +i
  CDO72216.1 246 kfderikqgdkkaA-----ElcrlgvEWVHQVAEGVYhTWDQLAFVRKHWDGPLVLKGVLSVEDAELAINAGADGIVVSTHGGRQIDGSIPALWALEKI 339
                 ***99998764332.....1233446777776654436**********************************************************999 PP

                 .......HHHH..SS-EEEESS--SHHHHHHHHHTT-SEEE CS
      FMN_dh 265 .......veavggrievlvDgGirrGsDvlkAlalGAdavl 298
                        ++++ gr++vl+D+Gir+G+D+++A+a+GA++vl
  CDO72216.1 340 cqaprvqQAQLSGRFTVLYDSGIRTGTDIFRAIAIGAQGVL 380
                 8866655555568**************************97 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.91   4.1e+03     288     307 ..     111     130 ..     101     151 .. 0.52
   2 !   16.5   0.1   7.3e-07    0.0033     108     234 ..     257     380 ..     250     384 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.91
                 BEEEEEE--B-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       IMPDH 288 Gvegrvpykgsvkevveqlv 307
                 Gv+g v+ ++++++      
  CDO72216.1 111 GVQGIVHREAELATAAAARE 130
                 44444444444444444333 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 7.3e-07
                 HHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 108 rvkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakka 206
                 ++++l++ gv+ +   +a+g  + + ++++ ++k++ +  ++   v + e a+  i+agad++ v    G      + a     ++    +v +a+ + 
  CDO72216.1 257 KAAELCRLGVEWV-HQVAEGVYH-TWDQLAFVRKHW-DGPLVLKGVLSVEDAELAINAGADGIVVSTHGGRQIDGSIPALWALEKICQAPRVQQAQLSG 352
                 5566666666654.356666543.567888899998.556666668889999999**********9888855444555555555555555555555555 PP

                 T-EEEEES---SHHHHHHHHHTT-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 207 gvpviaDGGikysgdivkAlaaGadavm 234
                   +v+ D Gi++  di +A+a+Ga+ v+
  CDO72216.1 353 RFTVLYDSGIRTGTDIFRAIAIGAQGVL 380
                 69**********************9886 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   4.1e-06     0.019     253     300 ..     330     379 ..     296     386 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
                   --HHHHHHHHHH..HHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEE CS
  Glu_synthase 253 lPlelalaevdq..tlkeeglrdrvsliadGglktgadvvkalalGAdav 300
                   +P + al ++ q  ++++ +l  r ++  d g++tg+d++ a+a+GA+ v
    CDO72216.1 330 IPALWALEKICQapRVQQAQLSGRFTVLYDSGIRTGTDIFRAIAIGAQGV 379
                   7888888888773359999****************************866 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3       0.5   2.3e+03     189     215 ..     124     149 ..     108     154 .. 0.61
   2 ?   -1.5   0.0      0.28   1.3e+03     119     168 ..     177     225 ..     165     230 .. 0.81
   3 ?    5.1   0.0    0.0027        12     165     205 ..     281     320 ..     272     345 .. 0.88
   4 ?    4.5   0.0    0.0041        18     177     202 ..     355     380 ..     339     383 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.5
                 HHHHHHHTT-SEEEESHHHHTSSSHHH CS
        ThiG 189 daaqamelGadavllntavaeakdpva 215
                  aa+a elG+  +l  ta +++ + va
  CDO72216.1 124 TAAAARELGVPMIL-STAASRSIEAVA 149
                 45666677776544.455555555554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.28
                 HHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHH CS
        ThiG 119 LvkeGFevlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnkealk 168
                   ++G++ l+ + d + l  r +++ + a +P+  ++G+  Gl+++ ++k
  CDO72216.1 177 AKENGYTTLVVTLDTMSLGWRPHDIDT-AYLPFYHAVGAQIGLTDPVFMK 225
                 457899999999999999999999986.5679999999999999988775 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0027
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESH CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavllnt 205
                  +l +++++ + P+++  G+ s +da  a++ Gad++++ t
  CDO72216.1 281 DQLAFVRKHWDGPLVLK-GVLSVEDAELAINAGADGIVVST 320
                 57889999999999985.999*****************998 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0041
                 -BEEES---SHHHHHHHHHTT-SEEE CS
        ThiG 177 PvivDAGigspsdaaqamelGadavl 202
                  v+ D Gi++ +d+  a+ +Ga++vl
  CDO72216.1 355 TVLYDSGIRTGTDIFRAIAIGAQGVL 380
                 5889*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2764.66
//
Query:       CDO72217.1  [L=133]
Description: hypothetical protein BN946_scf184970.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-15   54.2   0.0    1.5e-14   53.5   0.0    1.3  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   8.4e-19   1.5e-14      18      84 ..      17      83 ..       6      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 8.4e-19
                   ..--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHH CS
  Dimer_Tnp_hAT 18 sefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieq 84
                    e+++le+w+e+++ yP+l+++a dvL  ++s + +E +Fs ++++++e+r+++ p+ +  l  +++
     CDO72217.1 17 LEVNLLEYWEERQHQYPLLFRVALDVLPAQASAVPCEEVFSSSKETITERRTKMAPDLLSELQMLKH 83
                   589********************************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 963.85
//
Query:       CDO72218.1  [L=866]
Description: hypothetical protein BN946_scf184970.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 5489.47
//
Query:       CDO72219.1  [L=1070]
Description: hypothetical protein BN946_scf184970.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-112  374.9   0.0   4.6e-112  374.4   0.0    1.2  1  Plavaka   Plavaka transposase
    0.00023   21.4   0.0    0.00046   20.4   0.0    1.4  1  CHDCT2    CHDCT2 (NUC038) domain


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.4   0.0  5.2e-116  4.6e-112       1     324 []     260     575 ..     260     575 .. 0.96

  Alignments for each domain:
  == domain 1  score: 374.4 bits;  conditional E-value: 5.2e-116
     Plavaka   1 FknakeLlktiDs.lpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 Fkna+eL+++iD+ +p g+p++ ++ev ++ge            +e+++rd++++i++l+g+p+fa+ l+++Per+y+d++++ rvy +m+tg+w+w++
  CDO72219.1 260 FKNANELNAIIDKkVPAGRPRFIRREVVIAGEA-----------FEIFYRDIIAWIRALFGDPEFAGILVFTPERHYADADETIRVYFDMHTGRWWWDT 347
                 9******************************87...........**********************************99888**************** PP

     Plavaka  99 qie.ekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLke 196
                 q + ++ + gat++p+i+ssDKT+l+ f g+k+ayPvY++iGn+pk+vrrk+sr++++llayLp ++l++i+ s++ r+++ ++l+Hacl+ il+pLk+
  CDO72219.1 348 QRAlDQLKPGATIIPIIISSDKTQLTLF-GSKTAYPVYMTIGNLPKDVRRKPSRRGQILLAYLPSTRLQHIT-SHASRRRALANLYHACLTYILRPLKH 444
                 *55455456*******************.******************************************7.6666666******************* PP

     Plavaka 197 agkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdl.eeselrtreetlelleeaade...lkklwkeyglkgviepFw 291
                 ag +g+ + ++dg+ rr +pi+a  ++Dy Eq+l a++++g+Cpkc ++++e+g l  e + r+ +++l++l++++++   +++++ke+g+k++i+p+w
  CDO72219.1 445 AGINGIALVSGDGVSRRGHPIFALHVGDYLEQLLAAGCKHGECPKCPIPRDEIGILsPERPFRDLDKVLAALRKVSQGpraYTRACKEAGIKPIIRPYW 543
                 ******************************************************976677***************977999****************** PP

     Plavaka 292 edlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 +dlp+++i++l+ pDlLHql++gv+k Hlv W+
  CDO72219.1 544 ADLPFVNIYRLIVPDLLHQLYQGVIK-HLVGWL 575
                 **************************.*****6 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.1e-08   0.00046      14     131 ..     702     820 ..     696     834 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-08
      CHDCT2  14 lagvvlhGyaRwqDiqndprfai..inepFkseaekgnfleiknkflarrfklleqalvieeqlrraallnlqeekekvgslaqrfaelellaeshqkl 110
                 + +++l+G +   D q  +r+ i    e+++++++k +f ++   +l+rr k+l + + i+ +l+ ++++++++++++  +++++  + e+l++sh + 
  CDO72219.1 702 VLAIILFGTTDNYDTQYTERLHIdfAKEAYRATNHKDEFPQMT-LWLERREKILRHEVYIHWRLECVSQSHSSDREHDLYAVSASSPHPEHLSSSHGHP 799
                 567899999999999999988875579************9995.79***************************************************** PP

      CHDCT2 111 lkesaagnknanavlekvLnq 131
                 ++ s++g ++a++  + +  q
  CDO72219.1 800 VRISRNGRHQARDDAAACAPQ 820
                 *******99998876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 6677.99
//
Query:       CDO72220.1  [L=733]
Description: hypothetical protein BN946_scf184970.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-42  144.6   0.9    1.5e-20   73.7   0.0    2.3  2  Plavaka          Plavaka transposase
  ------ inclusion threshold ------
      0.028   13.8   1.0       0.34   10.2   0.2    2.2  2  Rhomboid_SP      Rhomboid serine protease
      0.057   13.5   0.1       0.15   12.1   0.1    1.7  1  PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
       0.23    9.5   6.9       0.34    8.9   6.9    1.1  1  DNA_pol_phi      DNA polymerase phi


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   3.3e-24   1.5e-20       1     101 [.      49     145 ..      49     154 .. 0.95
   2 !   68.9   1.1   9.9e-23   4.4e-19     277     324 .]     159     206 ..     144     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 3.3e-24
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweqq 99 
                 +kn+k+L+k+iD+lp  + ewk   ++veg+l++ +++  +ee++lw + p+++++el+gnp+f+ +++ya+ r  +   +g r ysem+tgdw+ ++q
  CDO72220.1  49 YKNKKALFKKIDQLPA-GSEWKLDILTVEGDLNGPNGQPLSEELDLWRQCPVDAVRELMGNPAFRAYMAYAAVRMKR---NGVRFYSEMNTGDWWGDVQ 143
                 89**************.********************************************************9988...78**************999 PP

     Plavaka 100 ie 101
                 ++
  CDO72220.1 144 TA 145
                 43 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 9.9e-23
     Plavaka 277 lwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 ++ ++gl++v+epFw+dlp++di++++tpD+LHql+kgv+k+Hl++Wv
  CDO72220.1 159 QYTTHGLRPVYEPFWADLPHTDIFACITPDILHQLHKGVIKEHLLQWV 206
                 56789******************************************8 PP

>> Rhomboid_SP  Rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.034   1.5e+02      74     108 ..     452     488 ..     449     492 .. 0.76
   2 ?   10.2   0.2   7.6e-05      0.34     125     158 ..     610     642 ..     602     654 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.034
  Rhomboid_SP  74 afrlveevdglsvPqtPltPgv..aslcsftssrsgl 108
                  a+r+  + +   + + PltP++  +sl+++tss  +l
   CDO72220.1 452 ALRQLVNSNVARAYHVPLTPSAhrVSLSTLTSSYGAL 488
                  6666666777778889999987557999999997776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.6e-05
  Rhomboid_SP 125 lkaaaallkGrslregtarrarrrsfvapsflee 158
                    aaa+l+kGrsl ++ ++   rrs+ ++s  ++
   CDO72220.1 610 AAAAASLMKGRSLLKSLSNA-PRRSLSTSSIPDN 642
                  568999********998876.8999999997765 PP

>> PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.4e-05      0.15      50      92 ..     100     146 ..      94     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
  PolyA_pol_arg_C  50 krakrllehprFraayDfLlLraesgev....leelaewWtefqead 92 
                      +   +l+ +p Fra + + + r + + v    +++ ++wW ++q+ad
       CDO72220.1 100 DAVRELMGNPAFRAYMAYAAVRMKRNGVrfysEMNTGDWWGDVQTAD 146
                      567899****************977777799999**********997 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.9   7.7e-05      0.34     624     692 ..     391     456 ..     382     466 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 7.7e-05
  DNA_pol_phi 624 vLearenkegqaelfedededeeddeeeeeeddeededseedddeeesdedeededdedvdeidelrek 692
                   Lea+ + ++++   ed ++d+++ +++++++ e   + e d+d++ + e e++ dd++v+    lr+ 
   CDO72220.1 391 LLEAELQRARESGGCEDVEDDDSEGQQDSGDEGERGGEGEADEDDDVDVEGEKQHDDGEVKA---LRQL 456
                  688888889999999999999999999999*9********9999999999999999999986...4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4857.40
//
Query:       CDO72221.1  [L=558]
Description: hypothetical protein BN946_scf184970.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3771.31
//
Query:       CDO72222.1  [L=699]
Description: hypothetical protein BN946_scf184970.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4878.92
//
Query:       CDO72223.1  [L=74]
Description: hypothetical protein BN946_scf184970.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.7    8.0  16.1        3.3    7.7  16.1    1.1  1  Mucin     Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  16.1   0.00018       3.3      35     105 ..       6      69 ..       2      73 .. 0.41

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00018
       Mucin  35 vveaaegqskltttttttkppttttttt.tasttittkttkattttttttttttateaPsdavttaeaPttt 105
                 + ++ + q+++t+ tt++ ++ttt + +  +s + +tk t+      +++ t  a +a        +aPt+t
  CDO72223.1   6 SQKSDKKQDQTTSDTTSVLSTTTTLVESkKTSDSEDTKKTTM-----NDSATSFAKKAAE---EGWNAPTAT 69 
                 344445555655555555555555555422223333333322.....2222333333332...344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2200  (0.122706); expected 358.6 (0.02)
Passed bias filter:                      800  (0.0446204); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 548.21
//
Query:       CDO72224.1  [L=210]
Description: hypothetical protein BN946_scf184970.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-42  143.6   0.1    6.6e-42  142.6   0.0    1.5  2  NFACT-R_1   NFACT protein RNA binding domain


Domain annotation for each model (and alignments):
>> NFACT-R_1  NFACT protein RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.0   3.7e-46   6.6e-42       1     108 [.       1     111 [.       1     112 [. 0.96
   2 ?   -2.7   0.0       0.5     9e+03      57      71 ..     149     164 ..     127     174 .. 0.51

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 3.7e-46
   NFACT-R_1   1 kvfwFkssdg...ylvimGkDkqeneelikkyleesdvwfhvdkessahvylrlsege.leeipeelleeaaqlakanSiagnklssvdvvyvpasnls 95 
                 +v +F+s+      +++mGkDk+ene+lik+++++ dvwfhvdk ssahvylr+++g+ ++ ipe ll+++aql+kanSi+gnk+++++++y+pa+nl+
  CDO72224.1   1 MVLFFTSTAVdppATIYMGKDKFENEDLIKYAWPQ-DVWFHVDKLSSAHVYLRMPDGMsWDAIPEPLLNDCAQLVKANSIEGNKKDNLTIIYTPADNLK 98 
                 8999995554588**********************.********************999**************************************** PP

   NFACT-R_1  96 ktapldtGsvgfk 108
                 kt+++++G+v+f+
  CDO72224.1  99 KTGDMAVGQVSFH 111
                 ************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.5
   NFACT-R_1  57 eeipeel.leeaaqla 71 
                 e+i++e   + aa+ a
  CDO72224.1 149 ERIKKENaAKRAAAAA 164
                 3333222133333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2101  (0.117184); expected 358.6 (0.02)
Passed bias filter:                      814  (0.0454013); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.38s 00:00:01.06 Elapsed: 00:00:00.60
# Mc/sec: 1047.45
//
Query:       CDO72225.1  [L=450]
Description: hypothetical protein BN946_scf184970.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-60  204.0   0.0    1.6e-59  201.9   0.0    1.7  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0     9e-64   1.6e-59      86     437 ..       5     410 ..       2     429 .. 0.87

  Alignments for each domain:
  == domain 1  score: 201.9 bits;  conditional E-value: 9e-64
                 SSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS............EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHH CS
        p450  86 gvlfangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess............elditellskaaldvigsilFgarfdlledekls 171
                 g+l a+g+++k++Rr+ t+++  + ++ sl++++ + + +l +k+ + ++e++            +ld+  ++s+a++dvig   F  +f+ +  + ++
  CDO72225.1   5 GMLAAEGQMHKRQRRVATAAFSIQ-QMrSLVPVTFQKGLELKNKWLSLVSEAHdlspdekahggvKLDVCLWVSRATFDVIGLAGFDYQFNAIHGQTNE 102
                 8999********************.777***************************************************************88777754 PP

                 HHHHHHHHHHHHHHCHHHHCC....CCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.....SCSSCSHHHHHHHHC..TTCTCTSSS CS
        p450 172 elvkaveelssllskssvqll....llfp.llkylptkllrklkeavkklkdlldklieerretldsa.....kksrrdfldalllak..kekkgeskl 258
                  ++++ e+  +  s+++  l+    l+fp + +++p++ +r +++ +++++ ++ +l++e++++++++       s +d+l+all++    +   ++ +
  CDO72225.1 103 LFMAYKEMFETAISQQNGGLWdllaLYFPiIDRIWPGERYRVVRKSHEVINRVAGRLVQEKKSKIEESekagsIYSGKDLLSALLKSNiaVDLPPDQRI 201
                 44444443333455554444411116788889999*********************************9999966899*********9775555558** PP

                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT.........T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS CS
        p450 259 sdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr.........eptyddlqklpyldavikEtLRlhpvvplllpRevtk 348
                 sde++ +++ ++lfaG+dT+s t++w Ly+Lak+P+vqe+lr E+  v + +             y  +++lpyl++v+kEtLRl+p+v++++ R++t+
  CDO72225.1 202 SDEDILHNINTFLFAGSDTSSLTMTWLLYLLAKYPDVQERLRAELLGVAPVAPldsltedeiASLYTAIANLPYLEKVVKETLRLIPPVHSSI-RVATQ 299
                 *********************************************999866556667777666678899*********************777.99999 PP

                 ........CEEETT..........EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
        p450 349 ........dvvirg..........ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklf 425
                         +v +rg          +++pkG  v v++ a + d ev+ p+  +F+p+R+++  +   ++ + +   l F+aGpR+CiG ++ + e+k+f
  CDO72225.1 300 edviptstPVDLRGpgdkvekansFVMPKGACVHVPIEAFNLDREVWgPDGWSFNPDRWDKLPEavkAQPGLYNNILTFSAGPRSCIGVKFSIIEIKMF 398
                 777777775555556677777889***********************************98777667667889999*********************** PP

                 HHHHHHHEEEEE CS
        p450 426 latlLqnFevel 437
                 +  lL +F++  
  CDO72225.1 399 IYILLTHFKFAE 410
                 *********974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.37s 00:00:01.04 Elapsed: 00:00:00.58
# Mc/sec: 2349.61
//
Query:       CDO72226.1  [L=428]
Description: hypothetical protein BN946_scf184970.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-81  273.7   6.2    2.6e-81  273.5   6.2    1.0  1  Asp              Eukaryotic aspartyl protease
    5.3e-14   52.9  10.5    1.4e-11   45.0   5.9    3.4  3  TAXi_N           Xylanase inhibitor N-terminal
    1.2e-05   25.8   0.1       0.33   11.6   0.0    2.6  2  Asp_protease_2   Aspartyl protease
     0.0041   17.6   0.0       0.89   10.2   0.0    2.5  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
  ------ inclusion threshold ------
      0.029   14.2   0.0       0.53   10.1   0.0    2.3  2  TAXi_C           Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.5   6.2   7.2e-85   2.6e-81       2     314 ..     119     426 ..     118     427 .. 0.96

  Alignments for each domain:
  == domain 1  score: 273.5 bits;  conditional E-value: 7.2e-85
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepgs 99 
                 + g+isiGtp q+ft++fDTGSsdlWVpss+c+    c+ h+ty+pskSst +k++ s++isYGdg ++sG+ ++d+v+vgg++v+ q ++ +tke+++
  CDO72226.1 119 WTGTISIGTPAQSFTIDFDTGSSDLWVPSSSCS---SCRGHKTYNPSKSSTSSKKSGSFEISYGDGsTASGTPYTDSVTVGGVKVTSQYLAAVTKESEE 214
                 679*****************************8...7************************************************************95 PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggktvlcss 197
                  f++ + dG+LGlg+++is+ + +p+f + v++g ++  vfs+ l    ++g+e+  Gg++e  y+Gs+   +++s kgywqi   svt++gkt+  +s
  CDO72226.1 215 -FTQDPADGLLGLGYPAISSLNHNPFFFTAVQEGAVSDGVFSFKLG---KSGSELYIGGTNEDLYTGSIESHKLSSsKGYWQIGGASVTINGKTA--AS 307
                 .88888***************************************7...99***********************9989*****************..9* PP

                 EEEEEEETTCSSEEEEHHHHHHHHHHHTTEE..EETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE...EECCTSSSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
         Asp 198 gcqailDtGTsllalptsivekiakaigakk..sesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl...vseeegdlwiL 291
                 +++ ++D+G +++++p +++e+++ +i+++   +e++g y + Cds   +p+i+f+ gg++ +v+ +++ l e+e+++++C+ +l       ++++w+L
  CDO72226.1 308 KFDTVIDSGSTIMTAPPQAAEAFWAKISGSRiyDEEQGLYSFPCDS---EPEIAFSWGGKSWSVSGEDFNLGETEQGSGECVGALsggNLGLGSSTWLL 403
                 ***************************99852267789*******7...9***********************************888788899***** PP

                 EHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 292 GdvFlrsayvvfdldnnrvglAe 314
                 Gd+F++++y+vf +d+n vg+Ae
  CDO72226.1 404 GDTFMKNVYTVFSVDDNSVGFAE 426
                 **********************8 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   5.9   3.8e-15   1.4e-11       4     147 ..     122     235 ..     119     269 .. 0.74
   2 ?    0.9   0.0      0.13   4.5e+02       3      34 ..     298     329 ..     297     364 .. 0.74
   3 ?   -2.5   0.1       1.5   5.3e+03     131     150 ..     389     408 ..     362     417 .. 0.65

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.8e-15
      TAXi_N   4 sisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatdtlt 102
                 +isiGtp+q++++++DtGs+ +Wv  + c+                     +c+ ++      + s++s+ss+++ ++eisyg dgs++sG+  td++t
  CDO72226.1 122 TISIGTPAQSFTIDFDTGSSDLWVPSSSCS---------------------SCRGHKTY----NPSKSSTSSKKSGSFEISYG-DGSTASGTPYTDSVT 194
                 89************************3333.....................44444444....5667788899999******8.*************** PP

      TAXi_N 103 lsstdgksvkvpnlvfGCgk.snlgglaagadGilGLGrgklSlvs 147
                 +     ++vkv++  ++ ++ ++++  ++ adG+lGLG+ ++S ++
  CDO72226.1 195 V-----GGVKVTSQYLAAVTkESEEFTQDPADGLLGLGYPAISSLN 235
                 *.....889999666666662555555668*********9999655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
      TAXi_N   3 vsisiGtppqplklvvDtGsdltWvqCkpcka 34 
                 v+i+ +t + ++  v+D Gs ++    ++ +a
  CDO72226.1 298 VTINGKTAASKFDTVIDSGSTIMTAPPQAAEA 329
                 688999999************99888876665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
      TAXi_N 131 gadGilGLGrgklSlvsqla 150
                  + G lGLG++   l + + 
  CDO72226.1 389 LSGGNLGLGSSTWLLGDTFM 408
                 36789999998877766666 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.1e-05      0.33      11      88 ..     133     226 ..     120     228 .. 0.65
   2 !   11.4   0.0   0.00011      0.38       2      35 ..     297     334 ..     296     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
  Asp_protease_2  11 rfllDTGasttlispelaekl........glkvreseltvrvsg......aggevkarlvrldslklggltlknvpalvld......lgeeidgl 85 
                     +  +DTG+s + ++++   ++             +s++  + sg       +g++ + +   ds+++gg++++++ ++ +        ++++dgl
      CDO72226.1 133 TIDFDTGSSDLWVPSSSCSSCrghktynpS----KSSTSSKKSGsfeisyGDGSTASGTPYTDSVTVGGVKVTSQYLAAVTkeseefTQDPADGL 223
                     5669**********9999998765533331....222222222211221134444445555778*********9986555547777777899*** PP

  Asp_protease_2  86 LGm 88 
                     LG+
      CDO72226.1 224 LGL 226
                     **7 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
  Asp_protease_2   2 pvtinG....kpvrfllDTGasttlispelaeklglkv 35 
                     +vtinG     +++ ++D+G++ ++ +p++ae+   k 
      CDO72226.1 297 SVTINGktaaSKFDTVIDSGSTIMTAPPQAAEAFWAKI 334
                     69****66655679*****************9875555 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00025      0.89      14      87 ..     136     226 ..     123     228 .. 0.65
   2 ?    4.8   0.0     0.012        42       2      31 ..     297     330 ..     296     343 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
                      EETT-SS-EEEHHHHHHT..........TGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEEESS.......SSEEEEH CS
  gag-asp_proteas  14 vDTGAsstiiseelaerl..........glsrkedkgkvevktangeveakrvrldsvkiggielrnvsavvlegel.......ddlLLGl 87 
                      +DTG s+  ++++    +            +++++ g++e++ ++g++  ++ + dsv++gg++++   ++ +++e        +d+LLGl
       CDO72226.1 136 FDTGSSDLWVPSSSCSSCrghktynpskSSTSSKKSGSFEISYGDGSTASGTPYTDSVTVGGVKVTSQYLAAVTKESeeftqdpADGLLGL 226
                      7999999999999999995444443332233333345566688888888888899999999999887665555544412334345559997 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
                      EEEETTEE....EEEEEETT-SS-EEEHHHHHHT CS
  gag-asp_proteas   2 kvkingkp....vkflvDTGAsstiiseelaerl 31 
                      +v+ingk+    ++ ++D+G + ++ +++ ae+ 
       CDO72226.1 297 SVTINGKTaaskFDTVIDSGSTIMTAPPQAAEAF 330
                      6899998533336899****99999999888865 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.069   2.5e+02      11      54 ..     293     332 ..     291     339 .. 0.81
   2 ?   10.1   0.0   0.00015      0.53      93     160 ..     355     425 ..     351     426 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.069
                 ETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHH CS
      TAXi_C  11 vngkrlplpasaldldktgsggtvlstgtpytvletdvYralvk 54 
                 ++g+ + ++ ++       +  tv+++g+++++ ++++ +a+ +
  CDO72226.1 293 IGGASVTINGKTA----ASKFDTVIDSGSTIMTAPPQAAEAFWA 332
                 7888898888885....68999*********9999988776655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00015
                 --EEEEESSS-EEEE-GGGGEEE-S..SSEEEE-EEE-..-S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  93 Ptitlvleggaewtisgenllvkve..ggvvClafves..gvagesavviGglqlednllvFDleksrlgFs 160
                 P+i +    g++w +sge++ + ++  g+  C++ +++     g+s+  +G   +++++ vF ++++ +gF+
  CDO72226.1 355 PEIAFSWG-GKSWSVSGEDFNLGETeqGSGECVGALSGgnLGLGSSTWLLGDTFMKNVYTVFSVDDNSVGFA 425
                 55556555.899*****96665555226699*******65445788999**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2994.65
//
Query:       CDO72227.1  [L=279]
Description: hypothetical protein BN946_scf184970.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-29  101.5   0.0    7.6e-29  100.9   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.2e-05   25.7   0.2     0.0042   17.6   0.1    2.4  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   8.4e-33   7.6e-29       5     118 .]       6     130 ..       3     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 8.4e-33
      DIOX_N   5 dlspl.sdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg.kkldwkesfdlgte 98 
                 dl+++ s d + r+ + +++r+Ac +vGffyv+nhg+ e+ ++++++a+++FF+lP+e+K++l  +k+ +f+Gy+++ + + d+ +++d++e+f++g+e
  CDO72227.1   6 DLKDIdSPDpDVRHTLGQAVRDACINVGFFYVKNHGIAEDTVNQALSASKDFFSLPLEKKMELdiRKTSNFKGYNPVLSSNNDPlNRGDLHEGFEFGWE 104
                 67767533426699*************************************************866667*****************************9 PP

      DIOX_N  99 lp....eddp...agkplegpnqwPee 118
                        d +   ++  + g n+wP+e
  CDO72227.1 105 EMqareHD-EkraHDGVMAGNNVWPSE 130
                 54555322.23556677********86 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00065       5.8       5      28 ..     178     203 ..     174     204 .. 0.73
   2 !   17.6   0.1   4.7e-07    0.0042      64     100 ..     203     238 ..     201     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00065
                   EEEEEE-S------..---EEEEEES CS
  2OG-FeII_Oxy   5 lvlnyypphpdpev..ilglgahtda 28 
                   +++ +ypp++ p +   +g+gahtd 
    CDO72227.1 178 MRVLHYPPQNGPVDdrVIGIGAHTDL 203
                   555566***55555559*******96 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.7e-07
                   E-HHHHHHTTS-S----EEE----GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  64 iGdallflsngryksvlHrVlpvnegerRvsiayfie 100
                    Gd++  ++n  +ks+ Hr+   + g rR+si +f+ 
    CDO72227.1 203 LGDQFARWTNDVFKSTVHRAI-NRSGVRRYSIPLFFG 238
                   79******************9.888999*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1858.15
//
Query:       CDO72228.1  [L=106]
Description: hypothetical protein BN946_scf184970.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 764.91
//
Query:       CDO72229.1  [L=594]
Description: hypothetical protein BN946_scf184970.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-11   43.3   0.1    1.8e-10   41.4   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
    7.7e-11   41.9   0.1    1.6e-10   40.9   0.1    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    5.7e-09   36.5   0.4    3.3e-08   34.0   0.0    2.5  2  Methyltransf_11  Methyltransferase domain
    5.8e-08   32.7   0.1    1.5e-07   31.3   0.0    1.8  1  Methyltransf_31  Methyltransferase domain
    4.5e-07   29.9   0.0      6e-06   26.2   0.0    2.2  2  Methyltransf_23  Methyltransferase domain
    3.6e-05   23.4   0.0    6.5e-05   22.5   0.0    1.4  1  MTS              Methyltransferase small domain
      9e-05   23.2   0.2    0.00026   21.7   0.0    1.9  1  Methyltransf_12  Methyltransferase domain
    0.00021   20.8   0.0    0.00036   20.0   0.0    1.3  1  TehB             Tellurite resistance protein TehB
    0.00057   19.8   0.1     0.0011   18.9   0.1    1.4  1  Methyltransf_18  Methyltransferase domain
     0.0047   16.7   0.2     0.0076   16.0   0.2    1.3  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
      0.013   16.5   0.0      0.033   15.2   0.0    1.7  1  Methyltransf_24  Methyltransferase domain
      0.017   14.1   0.0      0.025   13.5   0.0    1.3  1  Methyltransf_9   Protein of unknown function (DUF1698)
      0.021   14.9   0.4      0.053   13.6   0.4    1.6  1  Vps51            Vps51/Vps67
      0.034   13.4   0.0      0.059   12.7   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
      0.065   12.9   0.0        0.1   12.3   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
      0.073   12.9   0.0       0.16   11.8   0.0    1.5  1  PRMT5            PRMT5 arginine-N-methyltransferase
       0.14   11.5   0.1       0.23   10.7   0.1    1.3  1  Methyltransf_2   O-methyltransferase domain
       0.16   11.9   0.0       0.33   10.9   0.0    1.4  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.8e-13   1.8e-10       1      97 []     259     358 ..     259     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.8e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCG..BSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaed..lpfedgsfDlvvssga.lhhlsdedlekalkei 89 
                      v+d+GcGtG l+l +ak+ g+++v ++D s+ + e+a++ +++++l   +++++g++ed  lp+  +++D++vs  + + +l ++ l+ +++  
       CDO72229.1 259 VMDVGCGTGILSLFAAKA-GAKRVFAIDASDIA-EKAAQIVKDNELddIITVIRGKVEDikLPEGYDHVDIIVSEWMgYALLYESMLDSVISAR 350
                      89****************.69*******99765.77777788888888999********44455666*******77768889999********* PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                       r L+p+G
       CDO72229.1 351 DRFLRPDG 358
                      ******99 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   1.6e-13   1.6e-10     162     233 ..     256     331 ..     246     358 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.6e-13
        PrmA 162 geevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva..lseellk....eekadvivaN 233
                 ++ v+DvG+G+GiL++ aak gak+v+a+D  ++A k+a+  ++ N++++ ++v+    e++ k      ++d+iv+ 
  CDO72229.1 256 DAVVMDVGCGTGILSLFAAKAGAKRVFAIDASDIAEKAAQ-IVKDNELDDIITVIrgKVEDI-KlpegYDHVDIIVSE 331
                 5679*******************************88776.5999*****999842222222.234467789999975 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   3.4e-11   3.3e-08       2      94 ..     261     360 ..     260     362 .. 0.82
   2 ?   -1.5   0.0       4.1   4.1e+03      18      34 ..     384     402 ..     373     418 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 3.4e-11
                      EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT..-EEEEEEES-CCC-...CCHHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfedn..sfDlvvssevlhhv...edpekalkeiaRv 87 
                      dvGcGtG+l+   ak+g +rv+++D s+ + k+a+  + +e l   ++++++ +e+++++++   +D++vs ++   +     ++++++   R 
       CDO72229.1 261 DVGCGTGILSLFAAKAGaKRVFAIDASDIAEKAAQIVKDNE-LddIITVIRGKVEDIKLPEGydHVDIIVSEWMGYALlyeSMLDSVISARDRF 353
                      9***********************99988887774444333.2366999*******999996559*******95555555499*********** PP

                      EEEEEEE CS
  Methyltransf_11  88 LkpgGll 94 
                      L+p+G +
       CDO72229.1 354 LRPDGGI 360
                      ****965 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.1
                      T..SEEEEEES-HHHHHHH CS
  Methyltransf_11  18 g..arvvgvDlskemlkla 34 
                      g  ++v+g+Dls+ + ++ 
       CDO72229.1 384 GfwSDVYGFDLSAMAKDVY 402
                      3458999***998776655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.5e-10   1.5e-07       4     124 ..     256     371 ..     254     404 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.5e-10
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklled..ekfDlilsn...evlnaladpd 91 
                      + +v+D+GCGtG l++ +a ++g  ++v+ iD s  a e+A ++ ++++ld  +++ +g +e+++  l +  + +D+i+s     +l + + +d
       CDO72229.1 256 DAVVMDVGCGTGILSLFAA-KAG-AKRVFAIDASDIA-EKAAQIVKDNELDdIITVIRGKVEDIK--LPEgyDHVDIIVSEwmgYALLYESMLD 344
                      5689***************.766.477*******988.8888889999999789*********88..4444599******9988888999**** PP

  Methyltransf_31  92 kileeiervlkpggilliedprllaelpakvee 124
                      +++    r l+p+g +++ + +      +++ +
       CDO72229.1 345 SVISARDRFLRPDGGIMAPSQS------KMMFA 371
                      ****************987776......44444 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     6e-09     6e-06      21     113 ..     254     358 ..     233     365 .. 0.74
   2 ?    0.8   0.0      0.39   3.9e+02      42      60 ..     382     402 ..     371     446 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6e-09
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd...ppell 102
                      ++++ v+d+GcGtGil+  +++ g+  v ++D+s++a + a+         +++ +  ++  ++ +e  ++ d+Iv+  + + + +   + +++
       CDO72229.1 254 FRDAVVMDVGCGTGILSLFAAKAGAkRVFAIDASDIAEKAAQivkdneldDIITVIRGKVEDIKLPEGYDHVDIIVSEWMGYALLYesmLDSVI 347
                      7899****************99999789999999998887777778888777777777777777777777888888876655555323344566 PP

  Methyltransf_23 103 rqiatllkpgG 113
                      +   + l+p+G
       CDO72229.1 348 SARDRFLRPDG 358
                      66666666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.39
  Methyltransf_23  42 engf..svtgvDlspeaveia 60 
                      + gf  +v+g+Dls +a + +
       CDO72229.1 382 RIGFwsDVYGFDLSAMAKDVY 402
                      3355569*******9987655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.5e-08   6.5e-05      31     102 ..     255     329 ..     229     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.5e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.E..EEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeae..vtlvdvdarAlesakenleankle.vevvasdvleeveekkfdliv 102
                 ++  v+D+GcG+G+l++ +ak+  +    +++ d+  +A ++ k n  +  +  ++   +d+      +++d+iv
  CDO72229.1 255 RDAVVMDVGCGTGILSLFAAKAGAKRVfaIDASDIAEKAAQIVKDNELDDIITvIRGKVEDIKLPEGYDHVDIIV 329
                 56679****************988843335555555666555555555544444444444544444455666666 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.6e-07   0.00026       1      98 [.     260     359 ..     260     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.6e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnn.nnvelealdlldldgg.ssfDlvv...asnvlhhlkdirevldni 89 
                      +++GcGtG l+   +++   +++ ++D s  a  +a++  +++e ++  ++++ +++d ++l++g +++D++v   +  +l +   +++v++  
       CDO72229.1 260 MDVGCGTGILSLFAAKA-GAKRVFAIDASDIAE-KAAQIVKDNELDDIiTVIRGKVED-IKLPEGyDHVDIIVsewMGYALLYESMLDSVISAR 350
                      69******999998888.888888999999999.888888888877751666666666.55666569999999777777777778888999999 PP

  Methyltransf_12  90 rklLkpgGr 98 
                       + L+p+G 
       CDO72229.1 351 DRFLRPDGG 359
                      999999985 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.6e-07   0.00036      16     119 ..     241     349 ..     230     362 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.6e-07
                 ----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-E.EEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEE...EEEESS.GGGS- CS
        TehB  16 tathsevveavkivkpgkvldlgcgqgrnslylsllgyd.vtawdknensiafleeikekenlknistalydineaklderydf...ilstvv.lmfle 109
                 ++    +++  ++ + + v+d+gcg g  sl+ +  g + v a+d  + + +  + +k+ e  + i+    +++++kl e yd    i+s  + + +l 
  CDO72229.1 241 ATYAKYILSNPDVFRDAVVMDVGCGTGILSLFAAKAGAKrVFAIDASDIAEKAAQIVKDNELDDIITVIRGKVEDIKLPEGYDHvdiIVSEWMgYALLY 339
                 444445677788999999****************99964378888887777777766666655544555567888889888875111555432245555 PP

                 GGGHHHHHHH CS
        TehB 110 aeripsiien 119
                 + ++ s+i+ 
  CDO72229.1 340 ESMLDSVISA 349
                 5566666655 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.1e-06    0.0011      15      97 ..     256     339 ..     250     357 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk.ee..e.vdtvviaGmGgelil 97 
                      +++v+D+G+  g+l+++++k g ak+v a+D +    eka + +++++l+d i+v+ ++  e +k +e  + vd++v   mG  l  
       CDO72229.1 256 DAVVMDVGCGTGILSLFAAKAG-AKRVFAIDAS-DIAEKAAQIVKDNELDDIITVIRGKV-EDIKlPEgyDhVDIIVSEWMGYALLY 339
                      6799**************9766.78******87.5789999********99999998886.44443443445888888888877655 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   7.6e-06    0.0076     101     172 ..     256     325 ..     228     353 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.6e-06
                 T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEE CS
      Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrv 172
                 + vV+dv  G G +++ +ak + akrv+aid    + k   + +k N++++++++i + ++++  ++  d+v
  CDO72229.1 256 DAVVMDVGCGTGILSLFAAK-AGAKRVFAIDASDIAEKA-AQIVKDNELDDIITVIRGKVEDIKLPEGYDHV 325
                 679****************9.88999******9888775.6789*******************998777775 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.3e-05     0.033       3      61 ..     262     316 ..     260     338 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.3e-05
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseea 61 
                      +G+  G  +l+ +    ++ga r++a+d    ae+aa+++++++ldd++++i+++ e+ 
       CDO72229.1 262 VGCGTGILSLFAA----KAGAKRVFAIDASDIAEKAAQIVKDNELDDIITVIRGKVEDI 316
                      6755666666655....4455699*****99999*********************9884 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.025      90     208 ..     230     352 ..     157     365 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                     TTEEE--SEEHHHHHHHHGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EE CS
  Methyltransf_9  90 fGvdidteWrsdwkWdrvlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafd 184
                     + v i+   r+    + +l     +++ +++dvGcg+G      + +gak v+ id s +     + v+     d   +++   +e+++  e++d
      CDO72229.1 230 HAVMIQDKVRTATYAKYILSNPDVFRDAVVMDVGCGTGILSLFAAKAGAKRVFAIDASDIAEKAAQIVKDNE-LDDIITVIRGKVEDIKLPEGYD 323
                     5556666666655555555555567899**************9***************99888888777655.6667777878899888777776 PP

                     EE...EE..ES-GGG-S-HHHHHHHHHCT CS
  Methyltransf_9 185 tv...fs..mGvlyhrrsPldhllqlkdq 208
                      v    s  mG     +s ld ++  +d 
      CDO72229.1 324 HVdiiVSewMGYALLYESMLDSVISARDR 352
                     55211334466655666777777666665 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   5.4e-05     0.053      13      81 ..     145     211 ..     135     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.4e-05
       Vps51  13 rellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqai 81 
                 +ell++++ k+l + ++++ +  + l++ ++ l y  Y++++s    ++ + +e+++ld ++s+ ++a+
  CDO72229.1 145 EELLKQEPPKDLTAAQRRISALQQKLNQAKQDLAY--YRRFVSERLNLAGLADELKNLDVSTSTTHAAV 211
                 47899*****************************9..*************************9998876 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05     0.059      63     162 ..     256     360 ..     219     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
                 T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.....--SEEEEES-GGGTSGGG.HHHHHHHHHHH CS
        CMAS  63 GmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.....kvdrvvsvgafehvgken.ydtffkklkkl 155
                    ++d+GcG G l   a++    +v+++  S+  a++a + v++ +l++  +v   + ed++      +vd +vs  +  ++ +e+ +d  +++ ++ 
  CDO72229.1 256 DAVVMDVGCGTGILSLFAAKAGAKRVFAIDASD-IAEKAAQIVKDNELDDIITVIRGKVEDIKLpegydHVDIIVSEWMGYALLYESmLDSVISARDRF 353
                 56799****************666788888776.566777899999********999999987444566777788866665555444145566666667 PP

                 S-TT-EE CS
        CMAS 156 lkedGll 162
                 l++dG +
  CDO72229.1 354 LRPDGGI 360
                 7766655 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001       0.1      26      83 ..     236     300 ..     234     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                    HHHHHHHHH..HHCCC..HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H...HHHHHHHHH CS
  Cons_hypoth95  26 drvrealFn..ilaae..iegarvLDlfaGsGalglEAlSRgakkavlvekdk...eavkilken 83 
                    d+vr a +   il++   +++a v+D+ +G+G l+l A+  gak++ +++ ++   +a++i+k+n
     CDO72229.1 236 DKVRTATYAkyILSNPdvFRDAVVMDVGCGTGILSLFAAKAGAKRVFAIDASDiaeKAAQIVKDN 300
                    677777775223333367999****************************9986111455566655 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.16      62     147 ..     245     334 ..     204     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                 C.........-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHTTCCGCEEEES-CCCCCHCC...-ECEEEE---B CS
       PRMT5  62 s........ekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneekWeekveviksdmrelkaee...kvdllvsELLG 147
                 +         ++ v++ vG G G l    + a + +k    +++a++  + a  + q  v+ ++ ++ ++vi+  + ++k +e   +vd++vsE +G
  CDO72229.1 245 KyilsnpdvFRDAVVMDVGCGTGILSL--FAAKAGAK----RVFAIDASDIAEKAAQ-IVKDNELDDIITVIRGKVEDIKLPEgydHVDIIVSEWMG 334
                 255555555678899999999998853..44444444....6788887777766654.4488899999*****9888888888888********999 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00023      0.23      50     128 ..     243     321 ..     218     337 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
                     HHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS----- CS
  Methyltransf_2  50 vakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslPea 128
                      ak +l + d+ +  +++DvG GtG l   ++ +    +v   D ++++e+A + + + ++++ ++++ G + + +lPe+
      CDO72229.1 243 YAKYILSNPDVFRDAVVMDVGCGTGILSLFAA-KAGAKRVFAIDASDIAEKAAQIVkDNELDDIITVIRGKVEDIKLPEG 321
                     56778888887777899********8766555.55778999**************9777888999********99***76 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00033      0.33      26      68 ..     256     295 ..     238     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekae 68 
                      +  v+DvG+G g Ls   a        +v++ida++   ++a+
       CDO72229.1 256 DAVVMDVGCGTGILSLFAAK---AGAKRVFAIDASDIAEKAAQ 295
                      66799************999...7789******9875555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4072.52
//
Query:       CDO72230.1  [L=1021]
Description: hypothetical protein BN946_scf184970.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-20   72.0   0.2    6.6e-20   71.0   0.2    1.6  1  RPAP1_C       RPAP1-like, C-terminal
    7.6e-11   41.6   6.2    7.6e-11   41.6   6.2    2.0  3  RPAP1_N       RPAP1-like, N-terminal
  ------ inclusion threshold ------
      0.067   13.1   2.3       0.14   12.0   2.3    1.5  1  Remorin_C     Remorin, C-terminal region
       0.14   13.0   0.0       0.38   11.6   0.0    1.7  1  DMAP_binding  DMAP1-binding Domain
        1.9    8.7   7.5         12    6.1   0.2    2.7  2  Metal_resist  Heavy-metal resistance


Domain annotation for each model (and alignments):
>> RPAP1_C  RPAP1-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.2   1.9e-23   6.6e-20       2      66 ..     244     309 ..     243     310 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.9e-23
     RPAP1_C   2 lRFdfdGdlvpl..adelethrgLhhHgdepalaGYTlkElfqLarSavpsQralalqtLgrilekl 66 
                 +RFd++G+ +p   +++l+th gLhhH+ e ++aGYTl+++f L+rS+vp+Qra +l +L++i +kl
  CDO72230.1 244 VRFDLSGTPIPAllSSKLPTHLGLHHHA-EGSHAGYTLEDIFLLSRSTVPAQRASMLGILAKIAHKL 309
                 7**********9999************9.889********************************997 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   6.2   2.1e-14   7.6e-11       4      46 .]      22      64 ..      20      64 .. 0.96
   2 ?   -3.5   0.1       2.6   9.2e+03      17      26 ..     600     609 ..     600     610 .. 0.88
   3 ?   -3.4   0.0       2.4   8.5e+03      20      41 ..     640     661 ..     640     661 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.1e-14
     RPAP1_N  4 deENrarLasMspeEIeeereeLlesLdPkllefLlkRankke 46
                +eEN +r+++M++eE+e+er+e+l +++P++ e L+k ++++e
  CDO72230.1 22 EEENIQRIEAMTEEEREQERAEILDKFGPNVAEVLRKAREARE 64
                69************************************99986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.6
     RPAP1_N  17 eEIeeereeL 26 
                 e+I+++re L
  CDO72230.1 600 EDILAARERL 609
                 78*****998 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.4
     RPAP1_N  20 eeereeLlesLdPkllefLlkR 41 
                 eeer   le++  +    L kR
  CDO72230.1 640 EEERSSVLETIKKAFSSGLEKR 661
                 7999999999988877777666 PP

>> Remorin_C  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3     4e-05      0.14      31      88 ..      16      74 ..      11      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
   Remorin_C 31 aWenekkakaeaelrk.leeklEkkrakaleklknklariekkAeekRasaeakrreee 88
                 W n+  ++  ++++  +ee+ E++ra+ l+k+  ++a++ +kA e+R+  ++ ++ e+
  CDO72230.1 16 GWRNHMEEENIQRIEAmTEEEREQERAEILDKFGPNVAEVLRKAREAREGKRKANHDET 74
                699998887777776516799***************************97766666555 PP

>> DMAP_binding  DMAP1-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.38      23      59 ..      30      67 ..      21     114 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
  DMAP_binding 23 GdiTeKgyekkklkLLreFlpnslkaenqa.apeskls 59
                  + +Te++ e++++++L++F pn ++  ++a ++ + ++
    CDO72230.1 30 EAMTEEEREQERAEILDKFGPNVAEVLRKArEAREGKR 67
                  679*****************844333322212211111 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   2.3     0.011        40      20      74 ..      10      64 ..       3      70 .. 0.70
   2 ?    6.1   0.2    0.0033        12      90     119 ..     602     631 ..     598     635 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
                  XXXXXXXTTHHBH.HHHHHHHS-TTHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist 20 gpggpppggpargraellraalgLpaeqraelra.alrdharelralrrelraarr 74
                  ++++p +++++++  e  ++ +++++e+r++ ra +l+++  ++ +  r +r+ar+
    CDO72230.1 10 PQSDPDGWRNHME-EENIQRIEAMTEEEREQERAeILDKFGPNVAEVLRKAREARE 64
                  5556666666666.5555666666666666666516666669************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0033
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Metal_resist  90 ieaalaeiraaqaalraqieeallefaatl 119
                   i aa++++  ++++++++i+ea+++f ++ 
    CDO72230.1 602 ILAARERLTVQDEEVWRRIWEAAAAFLEGA 631
                   889***********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 6481.39
//
Query:       CDO72231.1  [L=157]
Description: hypothetical protein BN946_scf184970.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1170.91
//
Query:       CDO72232.1  [L=941]
Description: Glycoside Hydrolase Family 131 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-90  301.8   0.0    6.2e-90  301.4   0.0    1.2  1  GH131_N         Glycoside hydrolase 131 catalytic N-terminal 
    1.9e-44  151.4   0.0    4.1e-44  150.3   0.0    1.5  2  Pro-kuma_activ  Pro-kumamolisin, activation domain
    0.00025   20.4   0.3    0.00049   19.5   0.3    1.4  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> GH131_N  Glycoside hydrolase 131 catalytic N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.4   0.0     1e-93   6.2e-90       1     257 []     649     930 ..     649     930 .. 0.95

  Alignments for each domain:
  == domain 1  score: 301.4 bits;  conditional E-value: 1e-93
     GH131_N   1 vlfDGRvpanataadfdklstsqvkpyltvvkgsesaseyltlskeakspa.........dksktkvlkvkiddkSiFvp.genaqtgfrRaellpqkd 89 
                 v++DGRvp n+t+ad+++++    +pyltvvkgse+a++y +l+ + ksp+          +++++v++v+id++SiF+p g+ +q+gfrR++l+++++
  CDO72232.1 649 VIWDGRVPFNVTDADLNTST----GPYLTVVKGSENATHYCHLLGHSKSPTplwneglipLVPQEQVISVTIDNSSIFIPgGGPPQFGFRRTDLIAAVN 743
                 89*****************9....***********************************888***********************************99 PP

     GH131_N  90 e....lndaieeGvttfhfSvkkdearplnltheyqivflEsaysshvfdlkvgtpfgsdta.....radtlkvldaalktlfstpfekgtwhNFavev 179
                      l + +e+ +t+fhfS++kd  rpln++heyqivf+E++++shvf +++g+ f+ +t      +a+++kvld+al+ lfstpf+ + whNFavev
  CDO72232.1 744 GehteLISRMEQNTTVFHFSIQKDDLRPLNYSHEYQIVFIEPNDGSHVFGIQLGSAFTDPTGplpatNAHSFKVLDHALNMLFSTPFTSNAWHNFAVEV 842
                 755555566**************************************************55555555******************************** PP

     GH131_N 180 dfdastlqvyyStgeapLkkvtepiandts....ggggefhfgllklplan.......qsdvvhdGiqesgiqegliysGvfvEdstdg 257
                 d++++tl v+yS++++ L+ v e ++n ts    +g+g+fh++llklp+++       q dvvh+Giqe  ++egl+ysGvfvE++ +g
  CDO72232.1 843 DWNNRTLAVWYSQNAELLRLVKEMTPNPTSaagpNGQGDFHIALLKLPIVDpadspadQGDVVHHGIQEG-TTEGLFYSGVFVESALKG 930
                 ******************************99997888********************************.*************98665 PP

>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.0   6.8e-48   4.1e-44       2     142 .]      38     179 ..      37     179 .. 0.98
   2 ?   -3.9   0.0       2.6   1.6e+04      53      74 ..     487     508 ..     483     513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 6.8e-48
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasr..hsdtkgwiafsatv 94 
                     +w++  +++++ +lp+r+gL+qnnl++ e++l  vs+p+sp+ygkh ++++v + faps+e+i+aV+nwL++sgia++r   s++kgwi+++at+
      CDO72232.1  38 DWVQSRKLEPDAVLPMRFGLTQNNLHRIEEMLLSVSHPSSPSYGKHFSPADVVDIFAPSDETIAAVTNWLVESGIAKERlrLSASKGWIEVNATT 132
                     6999******************************************************************************************* PP

  Pro-kuma_activ  95 aqverllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     a+ve l +++++ Y+h  ++ + + c +ys+Pe++++++d+i+pt +f
      CDO72232.1 133 AEVEDLIDAEYHVYTH-PSGAQQISCHSYSVPEHVRDHIDLIQPTVHF 179
                     ***************8.6***************************886 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.6
  Pro-kuma_activ  53 vaelfapseeaidaVrnwLess 74 
                     + + fa  + + +aV+++L+++
      CDO72232.1 487 FSNFFALPDYQATAVTSFLTNH 508
                     6788999999999*****9976 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   8.2e-08   0.00049     124     264 ..     381     567 ..     354     582 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.2e-08
                   EEEE-EESCETTCHHCHHHHHHHHHHHH.CC.T-EEEEE--SS-T-HH............EEE-TTCEECTTTSTTCEEEEEES............. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxx............. RF
  Peptidase_S8 124 vinmslgestslpktgrsiealainravnkk.gvlvviSaGNngktgs............slqagspvgtpstsknvitvgayt............. 194
                   v++ s+g +++ + t+   +  ++++++    g+ v  S+G +g  g                +  +  +p t+  v++vga++             
    CDO72232.1 381 VVSASYG-QDEGSVTEAYAARQCAEYGKLGMlGTTVLYSSGDDGVAGNggvclgpdgtpsRRGTRFSPDFPVTCPFVTAVGATQvnpgstvndpega 476
                   8889999.444444443333335555554445999999999999666655554454433322222233335555789999999999999******** PP

                   .................................TTSSB-TT--B-TT.......-EEEE-S-.CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHH CS
                   .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 .................................tegkiapfSsrGpssdgklkpdivapGgn.ivstwsrqsnnsaglssyqsmsGTSmAsPnaaga 257
                                                    ++   a f ++G +      pdi+a G+n +v+ +++          + ++ GTS ++P++ ++
    CDO72232.1 477 ceqvifsgggfsnffalpdyqatavtsfltnhpPPFTSAQFNNSGTVRG---FPDISANGANyVVAVAGE----------FVLVFGTSCSAPVVGSM 560
                   ****************************888888888888888888765...8*********44444443..........669************** PP

                   HHHHHHH CS
                   xxxxxxx RF
  Peptidase_S8 258 aAlllsa 264
                   ++l+ +a
    CDO72232.1 561 ITLINDA 567
                   ***9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 7324.16
//
Query:       CDO72233.1  [L=289]
Description: hypothetical protein BN946_scf184970.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-17   63.3   1.5    3.1e-09   36.1   0.0    3.0  3  SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
     0.0033   17.5   0.3     0.0065   16.5   0.3    1.4  1  DUF1192       Protein of unknown function (DUF1192)
  ------ inclusion threshold ------
      0.088   13.2   0.3      0.088   13.2   0.3    1.7  2  CLZ           C-terminal leucine zipper domain of cyclic nucl


Domain annotation for each model (and alignments):
>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   5.1e-13   3.1e-09      78     151 ..       6      71 ..       3      82 .. 0.87
   2 !   22.8   0.0   5.4e-09   3.2e-05     220     296 ..     145     216 ..     128     220 .. 0.80
   3 ?    2.0   0.2      0.01        63     357     384 ..     240     267 ..     230     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 5.1e-13
  SWI-SNF_Ssr4  78 fasDGyvWadaEqayklevgnGltlEiylqkaGyapg.eqvalhaRrRyRlvpskvpnpnapqpDpsLwivhYsk 151
                   f+ DG v+ d +q y++ +g G  lE+   k G++pg +++a + RrRyRl ++  p  +       L ++hY +
    CDO72233.1   6 FPIDGLVYLDRDQRYNVPIGGGRELEVVEVKYGFIPGiDTTAYRVRRRYRLAKGGHP--Q-------LVLIHYCR 71 
                   899************************************************975544..3.......55555555 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 5.4e-09
  SWI-SNF_Ssr4 220 vPqqmayppqqgqvgppakraarasaaqaaaaaaaeadleledeedvsrgDllDhlTPReiskaRYqqnhewmeEil 296
                    Pq+    +q+ ++ +  kra r s++  +   a+ a+   ed++   + D   ++  R ++ +RY++nhe+m+E++
    CDO72233.1 145 NPQALLA-HQNSSMEALEKRALRRSTSIGNRPGAT-AAARGEDDD---SADESETISTRTLALTRYRRNHEYMNEVF 216
                   3666555.55578888889*999999988888665.555778888...689999**********************9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.01
  SWI-SNF_Ssr4 357 rvaekveetkaeieklkaeHakrlaklk 384
                     +ekv++ +aeie+lk + a r + l+
    CDO72233.1 240 DLDEKVAKLNAEIEELKTKAAARKEALS 267
                   5789**************9998877765 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   1.1e-06    0.0065      23      51 ..     239     267 ..     224     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
     DUF1192  23 eELeerIalLeaEIaRleaaiakkkasra 51 
                 e+L+e +a+L aEI+ l+++ a++k+  +
  CDO72233.1 239 EDLDEKVAKLNAEIEELKTKAAARKEALS 267
                 89****************99887766544 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.89   5.3e+03      50      64 ..     149     163 ..     146     166 .. 0.64
   2 ?   13.2   0.3   1.5e-05     0.088      25      61 ..     237     273 ..     233     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.89
         CLZ  50 LlaeyessqrkLkqR 64 
                 Lla  +ss + L++R
  CDO72233.1 149 LLAHQNSSMEALEKR 163
                 666666666666666 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.5e-05
         CLZ  25 eqkeleekverLessLeaLqtrlarLlaeyessqrkL 61 
                 ++++l+ekv +L++++e L+t+ a   + ++s++ ++
  CDO72233.1 237 KKEDLDEKVAKLNAEIEELKTKAAARKEALSSTADHM 273
                 5799*******************99888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2282.50
//
Query:       CDO72234.1  [L=140]
Description: hypothetical protein BN946_scf184970.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-25   87.4   0.1    1.3e-24   86.8   0.1    1.3  1  HIT       HIT domain
    1.9e-10   41.2   0.5      3e-10   40.6   0.3    1.5  2  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
    6.5e-05   22.8   0.2    0.00011   22.0   0.2    1.4  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.1   2.1e-28   1.3e-24       1      95 [.      16     106 ..      16     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2.1e-28
                 TGCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC CS
         HIT   1 ekeipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHvipr 95 
                 ++eips +++e+d+v+ fldi p ++gh L+ipk h+++lh++++e +a++l a+kk+a al+     + ++++ nng+ a+q+v h+H+Hvip+
  CDO72234.1  16 KGEIPSFKLIETDKVFSFLDIGPLSKGHALIIPKYHAEKLHEVPDEYFADVLPAAKKIALALGV----ENYNLLQNNGRIAHQEVDHVHFHVIPK 106
                 579************************************************************8....79***********************98 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.3     5e-14     3e-10       1     106 [.       8     110 ..       8     118 .. 0.87
   2 ?   -1.9   0.0      0.75   4.5e+03      44      60 ..     122     138 ..     108     140 .] 0.64

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 5e-14
                 T-HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG-.-TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT--S-S--EE CS
      DcpS_C   1 kwvfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdL.tkehlpllkemrekakkvieekynevdaeelrvgvhyqPsvyhlHlH 98 
                 +++f++++kg++p+  ++e++k+  + Di p +k h l+ipk + ++l+++ ++   ++l + ++ a ++  e+yn       + g  +++ v+h+H+H
  CDO72234.1   8 SCIFCKIIKGEIPSFKLIETDKVFSFLDIGPLSKGHALIIPKYHAEKLHEVpDEYFADVLPAAKKIALALGVENYNL----LQNNGRIAHQEVDHVHFH 102
                 69*************************************************44457788888888888888888865....4568999*********** PP

                 EEE..... CS
      DcpS_C  99 visldfes 106
                 vi + + +
  CDO72234.1 103 VIPKPAAT 110
                 **987765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.75
                 ---SGGG--TTTTTHHH CS
      DcpS_C  44 dikslrdLtkehlpllk 60 
                 + +s+ +L++ h +l+ 
  CDO72234.1 122 KKPSMDELKQLHAELIT 138
                 45566666666666655 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   1.9e-08   0.00011      10     112 ..       5     109 ..       1     116 [. 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.9e-08
                 HHHH-S--.--SS---SS--S-B-SSEEEE---S-SSTT-EEEEESS--SSTTSS-HHHHHHHHHHHHHHHHHHHHTT--EEEEEE-..SSS-----EE CS
    CwfJ_C_1  10 sldsClfC.lsnpklekhlivsignkvYlalpkgpLssgHvliipieHisallsldeevldeirkfrkalvkmykkqdkdavvfEis..sersvHlaiq 105
                 sl sC fC + + + ++  ++   +kv+  l  gpLs+gH liip  H+++l ++++e   ++    k ++     ++ +++       +++  H++ +
  CDO72234.1   5 SLASCIFCkIIKGEIPSFKLIE-TDKVFSFLDIGPLSKGHALIIPKYHAEKLHEVPDEYFADVLPAAKKIALALGVENYNLLQNNGRiaHQEVDHVHFH 102
                 5667777755566667766666.5788899999*************************999999999988888888888888776444499999***** PP

                 EEE--HH CS
    CwfJ_C_1 106 vipvpks 112
                 vip p+ 
  CDO72234.1 103 VIPKPAA 109
                 **98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1027.99
//
Query:       CDO72235.1  [L=835]
Description: hypothetical protein BN946_scf184970.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-40  139.7   0.0    8.8e-29  100.7   0.0    2.2  2  Pkinase        Protein kinase domain
      3e-27   95.5   0.0    2.7e-23   82.6   0.0    2.1  2  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
      0.017   14.2   0.1      0.025   13.6   0.1    1.1  1  Seadorna_VP7   Seadornavirus VP7
      0.017   14.7   0.0       0.03   13.9   0.0    1.3  1  RIO1           RIO1 family
      0.018   14.9   0.0      0.041   13.8   0.0    1.6  1  APH            Phosphotransferase enzyme family
        0.1   11.9   0.0       0.17   11.2   0.0    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
       0.14   11.1   0.0       0.25   10.2   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain
       0.18   11.1   0.0        5.6    6.2   0.0    2.1  2  Kinase-like    Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   3.9e-32   8.8e-29       2     150 ..     157     312 ..     156     324 .. 0.93
   2 !   36.9   0.0   1.1e-12   2.5e-09     159     259 ..     396     489 ..     382     493 .. 0.81

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 3.9e-32
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS. CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgs. 94 
                 +    +G+G+f+ +  a  +++g +vAvK++++ + +k+ +     k+++rE ++ ++l+h++i+ l+ v +++   ++v+ y++ g+l+d+l+r+g  
  CDO72235.1 157 TLGPIVGRGGFSIIRTAS-SAQGGTVAVKIVRRADLDKQPDpalarKSLQREAAVWASLNHEHILPLFTVNHTPYADFFVTLYCPAGSLFDILKRDGRp 254
                 566789*******99999.799***********9999988899999************************************************76655 PP

                 .--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSS CS
     Pkinase  95 .lseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakeles 150
                  l++++a  +++q+++gl+y+H  +g +H DlK eN+L+de g+ Ki+DFG+a+++ +
  CDO72235.1 255 aLPQDDAGMMFRQVVRGLRYMHeVAGYVHGDLKLENVLVDEMGVCKIADFGMARKIGE 312
                 6*********************6688****************************9865 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 1.1e-12
                 SCGGGS-HHHH....TTSCB..SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCC CS
     Pkinase 159 gtseYlAPEvl....keney..skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkk 251
                 g+  Y APE+l    ++ +y   ++ D+W+lG++ly lltgk pfs+  +   + k+l+               ++ ++ i ++  ++l+ ++++   k
  CDO72235.1 396 GSLPYAAPELLlppnNAASYaaHPAQDIWALGIMLYALLTGKLPFSDPFEPRLQMKILHG-------------VFDMPQGIGRSGEQVLNGCIERSVAK 481
                 7899********9985555556899*********************44444444444444.............56778899999*************** PP

                 STTHHHHH CS
     Pkinase 252 Rltaeell 259
                 R+t++++ 
  CDO72235.1 482 RWTIAMVD 489
                 **998765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   1.2e-26   2.7e-23       6     166 ..     161     323 ..     156     348 .. 0.83
   2 !   10.9   0.0   8.7e-05       0.2     172     254 ..     401     487 ..     390     491 .. 0.76

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1.2e-26
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH......HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateee......keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                   +G+G f+ +  ++       +  +VavK++++   +++      +++l +ea++  +l+h++i+ l  v       ++vt y++ G+L + L+++ +
   CDO72235.1 161 IVGRGGFSIIRTASSA-----QGGTVAVKIVRRADLDKQpdpalaRKSLQREAAVWASLNHEHILPLFTVNHTPYADFFVTLYCPAGSLFDILKRDGR 253
                  6788888888888777.....8999******76544443344556899***********************999999*******************9* PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSST CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeak 166
                  ++l  +d   +  qv +G++y+++   +vH dl   NvL++e  v+ki+DfG+ar+i + d+  ++ee +
   CDO72235.1 254 PALPQDDAGMMFRQVVRGLRYMHEVAgYVHGDLKLENVLVDEMGVCKIADFGMARKIGEIDDDLESEEDE 323
                  **********************99765******************************6655554444443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.7e-05
                  S-HHHHHHSE......EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 172 mapEslkekk......ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfse 254
                   apE l   +         + D+W+ G++l+ ++t g+ p+++  + ++  k+ +g   ++p+ + ++  ++++ c e++ ++R t++ 
   CDO72235.1 401 AAPELLLPPNnaasyaAHPAQDIWALGIMLYALLT-GKLPFSDPFEPRLQMKILHG-VFDMPQGIGRSGEQVLNGCIERSVAKRWTIAM 487
                  555555332223333366788**************.*******9777776666655.5788999999999**********999988765 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.1e-05     0.025     152     187 ..     270     304 ..     262     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
  Seadorna_VP7 152 kdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   + L  +h e  +++hGD + en++ D++G+ k+ D 
    CDO72235.1 270 RGLRYMH-EVAGYVHGDLKLENVLVDEMGVCKIADF 304
                   5677889.999**********************995 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05      0.03     105     149 ..     259     304 ..     250     311 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 105 eeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 ++a  ++++v++ +r + + ag+vH+DL   Nvlvde   + i D+
  CDO72235.1 259 DDAGMMFRQVVRGLRYMHEVAGYVHGDLKLENVLVDEMgVCKIADF 304
                 56778999****************************9845556666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05     0.041     163     197 ..     276     308 ..     182     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++ ++ +HgDl++ N+lvd  +  v  + Df++a+
  CDO72235.1 276 HEVAGYVHGDLKLENVLVD--EMGVCKIADFGMAR 308
                 688999*************..67776899999986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-05      0.17     104     167 ..     243     305 ..     238     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
         Kdo 104 dLedllakwae..laeelkrallkavgrliaklhr.agvnHadlyaknillqqeeeeeaeiwliDld 167
                 +L d+l++  +  l++    +++++v r  + +h+ ag  H+dl   n+l+++ +     + + D+ 
  CDO72235.1 243 SLFDILKRDGRpaLPQDDAGMMFRQVVRGLRYMHEvAGYVHGDLKLENVLVDEMG----VCKIADFG 305
                 666666654445677888899*************85799*************998....56666665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.25     211     256 ..     264     309 ..     258     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
  Haspin_kinase 211 ifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                    +f q+v  L    +   + H dL+l+n+Lvd+ +   + d+ ++R 
     CDO72235.1 264 MFRQVVRGLRYMHEVAGYVHGDLKLENVLVDEMGVCKIADFGMARK 309
                    5777788887777778899*************************95 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.03        67     153     195 ..     268     311 ..     262     326 .. 0.83
   2 ?    6.2   0.0    0.0025       5.6     230     255 ..     420     445 ..     379     482 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.03
  Kinase-like 153 lirlaanLqa.kglvhgkftvdnllldekgglmlggftaLvrag 195
                  ++r   ++++  g vhg+++ +n+l de g  ++ +f+  ++ g
   CDO72235.1 268 VVRGLRYMHEvAGYVHGDLKLENVLVDEMGVCKIADFGMARKIG 311
                  55555555542699***********************9877766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0025
  Kinase-like 230 kldaWqlGlviyriwclklPltlate 255
                  + d W+lG+  y +   klP+  + e
   CDO72235.1 420 AQDIWALGIMLYALLTGKLPFSDPFE 445
                  469*****************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5816.05
//
Query:       CDO72236.1  [L=297]
Description: hypothetical protein BN946_scf184970.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-35  121.2   0.0    1.5e-33  116.3   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0021        38      21      77 ..       8      57 ..       2      91 .. 0.74
   2 !  116.3   0.0   8.1e-38   1.5e-33     260     415 ..     145     296 ..     125     297 .] 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0021
                CHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHH CS
        p450 21 elhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallat 77
                ++ e  ++l+ +ygpi+r+ +++ +++   + eavke++  +g+ f +    a ++t
  CDO72236.1  8 KRREWTHHLHLRYGPIVRIAPNEVSFA---SREAVKEIYTSGGSGFDK----ARFYT 57
                556667899**********99886654...567999999999844444....44443 PP

  == domain 2  score: 116.3 bits;  conditional E-value: 8.1e-38
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTE CS
        p450 260 deelaatvlellfaGvdTtsstlswaLyeLa..knPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgy 355
                  +  a ++++ l+aG+dTt  +l++ +++L     ++vqe+l+ E+          + + l +lpyldav+kE LR+ +++p++ pR+v+    v++g+
  CDO72236.1 145 YKAAASECMDHLVAGIDTTGDGLCFLMHQLSlpASQHVQERLHAELAA-------NSAASLDDLPYLDAVVKEGLRIFSPIPMSFPRVVPAgGKVVDGV 236
                 5667789********************97652279**********543.......35678*******************************6677777* PP

                 EE-TT-EEEEEHHHHHT.-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTH CS
        p450 356 lipkGtevivnlyalhr.dpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGe 415
                  +p Gt+v+  +++lhr d++vfp PeeF+peR+l+e+g+    +  f++F+aG R CiG+
  CDO72236.1 237 WLPGGTIVSCQPHTLHRlDESVFPLPEEFRPERWLQEEGA-AERNQLFFAFSAGGRGCIGK 296
                 ****************88*********************5.588999*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2222.35
//
Query:       CDO72237.1  [L=728]
Description: hypothetical protein BN946_scf184970.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   23.6   1.8    0.00062   19.5   0.1    2.6  2  zf-H2C2_5  C2H2-type zinc-finger domain
     0.0012   19.5   3.4        1.1   10.3   0.1    3.1  2  zf-C2H2_4  C2H2-type zinc finger
     0.0068   16.4   1.4       0.24   11.5   0.1    2.4  2  zf-BED     BED zinc finger
  ------ inclusion threshold ------
      0.038   14.3   0.8        1.3    9.3   0.6    2.7  2  zf-Di19    Drought induced 19 protein (Di19), zinc-binding
        1.1    9.9   7.8        6.3    7.5   0.1    3.4  3  zf-C2H2    Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.031   1.1e+02       8      24 ..     480     496 ..     475     497 .. 0.83
   2 !   19.5   0.1   1.7e-07   0.00062       6      24 ..     553     571 ..     551     572 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.031
   zf-H2C2_5   8 YstawksnLkRHlrrkH 24 
                 + t ++s+L  H++ +H
  CDO72237.1 480 FETLSRSTLSLHIKGQH 496
                 778899********988 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.7e-07
   zf-H2C2_5   6 CDYstawksnLkRHlrrkH 24 
                 C+Y++ + s+L+RHl+++H
  CDO72237.1 553 CSYKSPTGSDLRRHLKKVH 571
                 ******************* PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.5   0.00089       3.2       2      24 .]     475     496 ..     474     496 .. 0.92
   2 !   10.3   0.1   0.00031       1.1       4      24 .]     551     571 ..     551     571 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00089
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkthH 24 
                 kC+iC ++  s+++L+ H+k +H
  CDO72237.1 475 KCKICFETL-SRSTLSLHIKGQH 496
                 8********.9999999**9988 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00031
   zf-C2H2_4   4 piCgksFsskka..LlrHlkthH 24 
                 p+C  s++s+++  L+rHlk++H
  CDO72237.1 551 PLC--SYKSPTGsdLRRHLKKVH 571
                 78*..777777788********9 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   6.6e-05      0.24      10      43 ..     470     496 ..     468     497 .. 0.81
   2 ?    3.4   0.1     0.023        81      33      43 ..     561     571 ..     552     572 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
                 --GGSS--EETTTTEE----SSTHHHHHHHHHS- CS
      zf-BED  10 vslkeqkavCryCgkilsrgggttnLkrHLrrkH 43 
                 v+   qk++C++C ++lsr+     L+ H++ +H
  CDO72237.1 470 VP---QKVKCKICFETLSRS----TLSLHIKGQH 496
                 55...9*************6....7777777666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
                 HHHHHHHHHS- CS
      zf-BED  33 tnLkrHLrrkH 43 
                 + L+rHL++ H
  CDO72237.1 561 SDLRRHLKKVH 571
                 78*******99 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   0.00037       1.3       2      32 ..     473     503 ..     472     532 .. 0.82
   2 ?    1.7   0.0     0.087   3.1e+02      35      53 ..     551     571 ..     543     572 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
     zf-Di19   2 sftCPyCgkeltvkeLveHvedeHrveskev 32 
                 +++C  C ++l+ ++L  H++ +H ++++  
  CDO72237.1 473 KVKCKICFETLSRSTLSLHIKGQHARNKEDL 503
                 689999******************9988753 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.087
     zf-Di19  35 PvCaek..vtkdlvaHltleh 53 
                 P+C+ k  ++ dl +Hl+  h
  CDO72237.1 551 PLCSYKspTGSDLRRHLKKVH 571
                 899977335569999998877 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.5    0.0088        31       2      23 .]     475     496 ..     474     496 .. 0.93
   2 ?   -0.9   0.1      0.77   2.8e+03       1       8 [.     505     514 ..     505     531 .. 0.82
   3 ?    7.5   0.1    0.0018       6.3       5      23 .]     552     571 ..     551     571 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0088
                 EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                 kC++C ++  ++s L  Hi+  H
  CDO72237.1 475 KCKICFETL-SRSTLSLHIKGqH 496
                 8********.9*******99877 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.77
                 EEET..TTTE CS
     zf-C2H2   1 ykCp..dCgk 8  
                 y+C+  +Cg 
  CDO72237.1 505 YRCSvrGCGF 514
                 8999999994 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0018
                 TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                  C+++ ++ s+L+rH+++ H
  CDO72237.1 552 LCSYKSPTGSDLRRHLKKvH 571
                 6999*************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 5026.94
//
Query:       CDO72238.1  [L=407]
Description: hypothetical protein BN946_scf184970.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-39  135.2   0.0    1.8e-38  132.5   0.0    1.9  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   9.8e-43   1.8e-38      44     292 ..     130     354 ..     128     356 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 9.8e-43
                   THHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.............HHHHHHHHHHHH CS
  Aldo_ket_red  44 gqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp............sieevldaleelv 128
                   g++e+++G+al +s+++r++v +++K+      ++  + +e+++++l+esl++L+t+y+Dl+l+H+p    +            +   +++ leelv
    CDO72238.1 130 GRNEKEVGQALRESGVPRDQVWLTSKL------WNTFHAPEDVEHALDESLRNLDTEYLDLYLIHWPIAFKKgsnneldpeltaNPYPTWKKLEELV 220
                   89*************************......**********************************999999************************ PP

                   HTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HH CS
  Aldo_ket_red 129 keGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsk 224
                   ++Gk+r+iGvSnf++ +l+++  +  k+k++++qve n +    + +ll+ +k++++ l aysplg+     k++                     k
    CDO72238.1 221 DKGKVRNIGVSNFNIPRLRNLtANPLKYKPAVNQVELNYW--NPQPELLKWAKENNLLLEAYSPLGSN----KQV---------------------K 290
                   *********************88888999***********..************************43....222.....................2 PP

                   HHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 225 nldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   + ++++e++++ake ++++aq+ +++ +  +++++v+p++ +++++ +n+ ++  +l+++ +++l+++
    CDO72238.1 291 ETLQVPEVQAIAKELNITPAQAIISWHV--QRGTVVLPKSVTASRVIENFHVV--RLPDDLFDKLEKA 354
                   23789***********************..9**********************..****999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2777.41
//
Query:       CDO72239.1  [L=168]
Description: hypothetical protein BN946_scf184970.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1221.01
//
Query:       CDO72240.1  [L=379]
Description: hypothetical protein BN946_scf184970.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-39  133.7   0.2    9.9e-39  133.3   0.2    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      3e-13   50.1   0.1    2.4e-10   40.8   0.0    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    3.7e-09   36.3   0.2    1.1e-08   34.7   0.0    1.7  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    8.7e-08   32.3   0.7      0.011   15.8   0.1    3.9  4  NAD_binding_9   FAD-NAD(P)-binding
    1.7e-07   30.4   0.7     0.0079   15.1   0.0    2.4  2  Trp_halogenase  Tryptophan halogenase
    2.6e-07   30.5   5.8      0.033   13.8   0.2    4.0  4  DAO             FAD dependent oxidoreductase
    0.00059   19.0   0.1       0.72    8.8   0.0    3.0  3  Lycopene_cycl   Lycopene cyclase protein
    0.00068   18.4   0.2        3.5    6.2   0.0    3.8  4  HI0933_like     HI0933-like protein
    0.00085   19.7   0.0       0.11   12.9   0.0    2.8  3  NAD_binding_7   Putative NAD(P)-binding
      0.001   18.2   4.6        7.6    5.5   0.1    4.4  5  GIDA            Glucose inhibited division protein A
     0.0024   17.1   0.0       0.68    9.0   0.0    2.2  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
     0.0027   17.9   0.1       0.49   10.7   0.0    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0049   17.1   0.1        4.6    7.5   0.0    2.5  2  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
      0.044   13.0   0.0        1.1    8.4   0.0    2.1  2  StbA            StbA protein
       0.05   13.1   0.0       0.77    9.3   0.0    2.1  2  DUF1188         Protein of unknown function (DUF1188)
        0.1   11.9   0.3        8.1    5.7   0.0    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.12   11.6   0.0        9.8    5.3   0.0    2.2  2  Thi4            Thi4 family
       0.16   11.2   0.6        6.1    6.0   0.0    2.2  2  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.2   9.9e-42   9.9e-39       2     290 ..      11     302 ..      10     309 .. 0.80

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 9.9e-42
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......HHHHCHHHH.CCCCHCCTCEEEE...ESC.EE CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxx.xxxxxxxxxxxxx...xxx.xx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias......evvkklnqg.ielllgeevvkid...pgk.kk 84 
                  +vv++GgG+AG+  a++l++    ++++++lv  ++ ++ +  + +  ++ ++ed+ + +      + +   ++g ++     +vv+i    pgk +k
   CDO72240.1  11 NVVIVGGGWAGTLIARQLSAkldaSKHRIILV-NNRPFFIH-LIATARMTVTPEDRLEDKalvpfdK-LFYNGNGtVKIG---NVVSIAetaPGKgGK 102
                  79*****************999888*******.66666555.5556666666666655557999954.343334414433...466664333777677 PP

                  EEETEEECTCEEEEEESEEEE---E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHH...T-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
  Pyr_redox_2  85 vklekkkegdeekiaydklvlAtGs.sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalakl...gkevtlveardrll 178
                  v+l     +d+e+i y +lvlAtGs +p  ++ p    +v    r+  +  + k+++ + ++v+vGgG++G+E+A++ +++   +k+vtlv+  + ll
   CDO72240.1 103 VVL-----EDGEEIPYSALVLATGSiWPGPINFPQKDADV----RAHINSWRSKYEKAN-HVVIVGGGAVGIETAGEVKEAwpqKKKVTLVHSENLLL 190
                  777.....8899************978888899*993333....555555666666665.9****************7665552667*********** PP

                  .TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.EEESEEEE-S-EEES-HHCSHCCT-EE.EETTEEE--TTSBES.STTEE CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxx RF
  Pyr_redox_2 179 .raldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee.idadlvvvavGvrpstelleeklglel.derggivvdeflrtn.vpgiy 272
                    ++++++++ +e++++++G+ + lg +  +i ++g+ + v++e+g+e  dadlvv a G rp+t ++  +lg  + +++g + vd+fl++  +pg++
   CDO72240.1 191 nDTYPDKFRKDIEQRVRRKGISLILGDKL-DIPPEGT-VGVTTEKGKElPDADLVVPAFGSRPNTGFI-STLGQDVvTQHGTVRVDKFLEVPgHPGVF 285
                  *****************************.*****98.8899999999679**************999.7777776689************88***** PP

                  E-GGGCTECCSS--HHHH CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 273 aiGDvaggkggpelaqaA 290
                  a+GD++ + +  ++a +A
   CDO72240.1 286 AAGDII-DWKEQKQAAKA 302
                  ******.55555555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0093       9.2       1      32 [.      11      46 ..      11      69 .. 0.72
   2 !   40.8   0.0   2.4e-13   2.4e-10       1      63 [.     153     219 ..     153     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0093
                EEEEECSSHHHHHHHHHHHH.TT...SEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalae.lg...kkVtvversd 32
                +vv+vGgG+ g   A  l++ l    +++ +v +++
  CDO72240.1 11 NVVIVGGGWAGTLIARQLSAkLDaskHRIILVNNRP 46
                59*********9999999552433335666666665 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 2.4e-13
                 EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg...kkVtvversdkll.rllDeeaskilqeklekngievllntkv 63 
                 +vv+vGgG +g+E Ag+ +e     kkVt+v+ ++ ll   ++++++k ++++++++gi ++l+ k+
  CDO72240.1 153 HVVIVGGGAVGIETAGEVKEAWpqkKKVTLVHSENLLLnDTYPDKFRKDIEQRVRRKGISLILGDKL 219
                 89****************99655669************************************99876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.1   1.1e+03       1      17 [.      13      29 ..      11      42 .. 0.78
   2 !   34.7   0.0   1.1e-11   1.1e-08     104     305 .]      92     288 ..      75     288 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
  Pyr_redox_3  1 iIiGaGPaGlaaaielk 17
                 +I+G+G aG  +a +l 
   CDO72240.1 13 VIVGGGWAGTLIARQLS 29
                 79999999988887765 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 1.1e-11
  Pyr_redox_3 104 VesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkya.gqkvvViGgknSavDaAlelvrk...gaeVtvvtrgs 197
                  + + ++ ++g +v  + e++  + +++AtG    P   n+p ++   ++ + ++  +ky+  ++vv++Gg+  ++++A e+ ++    ++Vt+v++++
   CDO72240.1  92 IAETAPGKGGKVVLEDGEEIPYSALVLATGS-IWPGPINFPQKD-ADVRAHINSWRSKYEkANHVVIVGGGAVGIETAGEVKEAwpqKKKVTLVHSEN 187
                  455556677788888899999999*******.889999999998.45544444433456547899*************987665555**********9 PP

  Pyr_redox_3 198 eiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk.slfeldedgrpvlteete 294
                   + ++  ++  + + die+r+++   ++ i ++   +++     e ++ v+te+gk++   d vv a G +p++ f++   +   ++ g++ +++  e
   CDO72240.1 188 LLLND--TYPDKFRKDIEQRVRR---KG-ISLILGDKLDIPP--EGTVGVTTEKGKELPDADLVVPAFGSRPNTGFISTlGQDVVTQHGTVRVDKFLE 277
                  88776..4666799999999987...35.9999998776544..57899*****************************96444556889999999999 PP

  Pyr_redox_3 295 etnvpglflaG 305
                      pg+f aG
   CDO72240.1 278 VPGHPGVFAAG 288
                  99999999988 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.1e-05     0.011       1      37 [.      13      48 ..      13      59 .. 0.90
   2 !    9.7   0.0   0.00078      0.78     121     154 ..      86     121 ..      77     123 .. 0.83
   3 ?    1.9   0.1      0.19   1.9e+02       1      32 [.     155     184 ..     155     220 .. 0.80
   4 ?   -0.2   0.0      0.87   8.6e+02     128     154 ..     222     248 ..     190     250 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   +ivG+G +G++++++L a+  ++s+++i l++++++ 
     CDO72240.1 13 VIVGGGWAGTLIARQLSAKL-DASKHRIILVNNRPFF 48
                   7******************8.9*********999875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00078
  NAD_binding_9 121 raevvdleeradgq..avlladgaslaadaVvLAlG 154
                     ++vv+++e+a g   +v+l+dg+++ + a+vLA+G
     CDO72240.1  86 IGNVVSIAETAPGKggKVVLEDGEEIPYSALVLATG 121
                    56899999988654349******************9 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.19
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfd 32 
                    +ivG+G+ G+ ++ ++ +    +++ ++tl+ 
     CDO72240.1 155 VIVGGGAVGIETAGEVKEAW--PQKKKVTLVH 184
                    79********9999987775..6666666665 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.87
  NAD_binding_9 128 eeradgqavlladgasl.aadaVvLAlG 154
                     ++++ + v++++g++l +ad Vv A G
     CDO72240.1 222 PPEGT-VGVTTEKGKELpDADLVVPAFG 248
                    44433.469999999988******9998 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.9e-06    0.0079       1      39 [.      11      50 ..      11      87 .. 0.86
   2 !   13.4   0.3   2.7e-05     0.027       2      36 ..     154     188 ..     153     190 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.9e-06
                    EEEEE--SHHHHHHHHHHHHHTTTS.SEEEEEE-SSS--- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk.levtlveseeigtv 39
                    ++vivGGG aG l A  l+  l+ + +++ lv+   ++++
      CDO72240.1 11 NVVIVGGGWAGTLIARQLSAKLDASkHRIILVNNRPFFIH 50
                    69********************9999******98877665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.7e-05
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlveseei 36 
                     +vivGGG  G  +A  +++a  +k +vtlv se++
      CDO72240.1 154 VVIVGGGAVGIETAGEVKEAWPQKKKVTLVHSENL 188
                     9*******************************975 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   3.3e-05     0.033       2      29 ..      12      45 ..      11      58 .. 0.79
   2 ?    4.1   0.1     0.029        29     158     202 ..      79     122 ..      58     141 .. 0.76
   3 !   11.1   0.4   0.00021      0.21       1      29 [.     153     186 ..     153     193 .. 0.83
   4 ?    2.4   0.0     0.098        98     144     203 ..     194     250 ..     169     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
                EEEECTSHHHHHHHHHHHHT.T.....EEEEESS CS
         DAO  2 vviiGGGiiGlstAyeLarr.g.....Vtllekg 29
                vvi+GGG +G  +A++L+++       ++l+  +
  CDO72240.1 12 VVIVGGGWAGTLIARQLSAKlDaskhrIILVNNR 45
                9****************76542335678888766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.029
                 HTT-EEEESECEEEEEEEE.TCEEEEEEECTEEEEEEEEEEE--GG CS
         DAO 158 alGveilegtevtgleeed.gkvwgverttpgendaadavVnaaGa 202
                 ++ +++  g +v+++ e+  gk+++v + ++ge+  + a+V+a+G 
  CDO72240.1  79 NGNGTVKIG-NVVSIAETApGKGGKV-VLEDGEEIPYSALVLATGS 122
                 455788888.9999966556888888.555677656789******3 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00021
                 EEEEECTSHHHHHHHHHHHHT.T....EEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g....Vtllekg 29 
                 +vvi+GGG +G+ tA e  ++ +    Vtl+ ++
  CDO72240.1 153 HVVIVGGGAVGIETAGEVKEAwPqkkkVTLVHSE 186
                 7*****************7655345789999876 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.098
                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE--GGG CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gen.daadavVnaaGaw 203
                  p k+ + + ++++++G+ +++g    ++  + ++ +gv  tt+ g +   ad vV a G  
  CDO72240.1 194 YPDKFRKDIEQRVRRKGISLILG-DKLDI--PPEGTVGV--TTEkGKElPDADLVVPAFGSR 250
                 688999999999***********.44566..44456899..7777888755588**999954 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00072      0.72       2      23 ..      12      32 ..      11      49 .. 0.77
   2 ?   -0.5   0.0      0.49   4.9e+02     108     140 ..      88     121 ..      74     132 .. 0.76
   3 !    6.1   0.1    0.0048       4.8       2      38 ..     154     190 ..     153     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00072
  Lycopene_cycl  2 vvviGaGpAglslAarlteakp 23
                   vv++G+G Ag ++A +l +ak 
     CDO72240.1 12 VVIVGGGWAGTLIARQL-SAKL 32
                   9***************9.4443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.49
  Lycopene_cycl 108 kvesveeeea.geslvvleggrkirarlvvdarg 140
                     v s++e        vvle+g++i+ ++ v a+g
     CDO72240.1  88 NVVSIAETAPgKGGKVVLEDGEEIPYSALVLATG 121
                    5556655544255789**********99999999 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0048
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpg.lkvvlieaspsllf 38 
                    vv++G+G+ g+  A ++ ea p+  kv+l+  s++ll 
     CDO72240.1 154 VVIVGGGAVGIETAGEVKEAWPQkKKVTLV-HSENLLL 190
                    8****************8887761567777.6666654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011        11       2      21 ..      11      30 ..      10      53 .. 0.74
   2 ?   -0.7   0.0      0.45   4.5e+02     132     164 ..      92     122 ..      78     125 .. 0.67
   3 !    6.2   0.0    0.0035       3.5       2      31 ..     153     185 ..     152     191 .. 0.77
   4 ?    2.4   0.0     0.051        50     368     388 ..     274     294 ..     261     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
                 SEEEE--SHHHHHHHHHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaak 21
                 +v+++GgG AG + A ++++
   CDO72240.1 11 NVVIVGGGWAGTLIARQLSA 30
                 79************998843 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.45
                  EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 132 vksvekeedgkfrvktkseeeleadklvlAtGG 164
                  +++     ++  +v ++++ee+  ++lvlAtG+
   CDO72240.1  92 IAET--APGKGGKVVLEDGEEIPYSALVLATGS 122
                  3333..3334446666789************96 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0035
                  SEEEE--SHHHHHHHHHHHH...TT--EEEE-S CS
  HI0933_like   2 dviviGgGaAGlmaAisaak...rgkrVlllek 31 
                  +v+++GgGa G+ +A ++++   ++k+V+l+ +
   CDO72240.1 153 HVVIVGGGAVGIETAGEVKEawpQKKKVTLVHS 185
                  79*************998652225788888765 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.051
                  TT-BBTTSTTEEE-GGGBSEE CS
  HI0933_like 368 ktmeskkvpgLffaGEvlDve 388
                  k +e+   pg+f aG ++D++
   CDO72240.1 274 KFLEVPGHPGVFAAGDIIDWK 294
                  67889999***********96 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.11   1.1e+02       8      27 ..      10      29 ..       8      75 .. 0.67
   2 !   12.9   0.0   0.00011      0.11       8      41 ..     152     196 ..     149     260 .. 0.59
   3 ?   -1.2   0.0       2.8   2.8e+03      26      43 ..     299     316 ..     268     333 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
  NAD_binding_7  8 kkvlvvGgGevAarkvrkll 27
                   ++v++vGgG  ++  +r+l 
     CDO72240.1 10 RNVVIVGGGWAGTLIARQLS 29
                   78*******99875555443 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
  NAD_binding_7   8 kkvlvvGgGevAarkvrklle...agakvtvvapev........k 41 
                     +v++vGgG v+ + +  + e   +++kvt+v  e          
     CDO72240.1 152 NHVVIVGGGAVGIETAGEVKEawpQKKKVTLVHSENlllndtypD 196
                    79**********998877777222569****99884344332221 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.8
  NAD_binding_7  26 lleagakvtvvapevkee 43 
                     ++a+ + tvva +v ++
     CDO72240.1 299 AAKANTHATVVAANVVSF 316
                    445566666666666554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0076       7.6       1      18 [.      11      28 ..      11      44 .. 0.84
   2 ?    5.1   0.0      0.01        10     116     156 ..      87     128 ..      74     144 .. 0.72
   3 ?    1.1   2.3      0.17   1.7e+02       2      20 ..     154     172 ..     153     191 .. 0.82
   4 ?    2.8   0.0     0.051        51      95     150 ..     196     249 ..     190     269 .. 0.84
   5 ?   -1.9   0.0       1.4   1.4e+03     348     364 ..     274     290 ..     261     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0076
                CEEEE-SSHHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaa 18
                +v+++GgG+AG+  A ++
  CDO72240.1 11 NVVIVGGGWAGTLIARQL 28
                59*********9877765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.01
                 S-EEEEEECT.TEEEEEEETTS-EEEECEEEE--TT-BT-EE CS
        GIDA 116 eeveelivee.kkvkgvvtedgetikakavviatGtflkgki 156
                 ++v ++  +  +k   vv+edge+i  +a v+atG+   g i
  CDO72240.1  87 GNVVSIAETApGKGGKVVLEDGEEIPYSALVLATGSIWPGPI 128
                 5566663322455556*******************9555544 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
                 EEEE-SSHHHHHHHHHHHH CS
        GIDA   2 viViGgGhAGceAAlaaar 20 
                 v+++GgG  G+e A ++++
  CDO72240.1 154 VVIVGGGAVGIETAGEVKE 172
                 9************987765 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEEC.EEEE--TT CS
        GIDA  95 elyskevteklenepnleiieeeveeliveekkvkgvvtedgetikak.avviatGt 150
                 ++++k++++++++ + +++i +   ++ +  + + gv+te+g+++ +   vv a G+
  CDO72240.1 196 DKFRKDIEQRVRR-KGISLILGDKLDIPP--EGTVGVTTEKGKELPDAdLVVPAFGS 249
                 5788888888888.99*******999977..8899*******999776477778787 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.4
                 TTSBBSSSBTEEE-CGG CS
        GIDA 348 ntLetkkvkgLflAGqi 364
                 + Le+  ++g+f+AG+i
  CDO72240.1 274 KFLEVPGHPGVFAAGDI 290
                 56899999*******99 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0065       6.5     188     228 ..       6      48 ..       2      58 .. 0.77
   2 !    9.0   0.0   0.00069      0.68     151     225 ..     115     186 ..      97     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0065
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrr..qkkvelklvtrseal 228
                   + ++++++vG+G  +  i+++l ++  ++k  + lv  ++ +
   CDO72240.1   6 AQFPRNVVIVGGGWAGTLIARQLSAKldASKHRIILVNNRPFF 48 
                  566899******************9943344667666666665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00069
  K_oxygenase 151 nlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrr.qkkvelklvtrs 225
                  +lvl++G+    P  + + +  +   H ++  ++    ++++++++vG+G  + e + ++ +   +k++++lv ++
   CDO72240.1 115 ALVLATGSIWPGPINFPQKD-ADVRAHINSWRSK---YEKANHVVIVGGGAVGIETAGEVKEAwPQKKKVTLVHSE 186
                  67888887777777777655.3444555554444...58999***************9999995556899988765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00049      0.49       1      25 [.      14      42 ..      14      56 .. 0.81
   2 ?    4.6   0.0     0.038        38       1      25 [.     156     183 ..     156     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
                   EE--SHHHHHHHHHHHCC....TEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka....gfdvlll 25
                   IvG+G +G ++A+ L+ +    ++++ l+
     CDO72240.1 14 IVGGGWAGTLIARQLSAKldasKHRIILV 42
                   9**************97544456676665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.038
                    EE--SHHHHHHHHHHHCC...TEEEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka...gfdvlll 25 
                    IvG+G+ G  +A + ++a   +++v+l+
     CDO72240.1 156 IVGGGAVGIETAGEVKEAwpqKKKVTLV 183
                    9***********9999866658888885 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0046       4.6       1      35 [.      12      50 ..      12      70 .. 0.78
   2 !    7.2   0.0    0.0058       5.7       1      29 [.     154     185 ..     154     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0046
                EEEES-SHHHHHHHHHHHHTT....EEEEEEESSHHHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg....kdvvvidkdeerve 35
                ++i+G G  G+ +a++Ls++     ++++++ +++  ++
  CDO72240.1 12 VVIVGGGWAGTLIARQLSAKLdaskHRIILVNNRPFFIH 50
                79****************965588877998888775555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0058
                 EEEES-SHHHHHHHHHHHHTT...EEEEEEES CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg...kdvvvidk 29 
                 ++i+G G vG + a e++e++   k+v+++ +
  CDO72240.1 154 VVIVGGGAVGIETAGEVKEAWpqkKKVTLVHS 185
                 79*****************9988866887765 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.075        75     271     308 ..       7      47 ..       1      55 [. 0.82
   2 ?    8.4   0.0    0.0011       1.1     260     301 ..     139     181 ..     130     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.075
        StbA 271 gyth.vmvvGGG..aeliaeaikkatevsdekvikvdnpqf 308
                 ++++ v++vGGG    lia ++  + + s++++i+v+n  f
  CDO72240.1   7 QFPRnVVIVGGGwaGTLIARQLSAKLDASKHRIILVNNRPF 47 
                 56666999***95558******************9998766 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0011
        StbA 260 erviravsefsgythvmvvGGGaeliaea..ikkatevsdekvi 301
                  ++++  s++++ +hv++vGGGa  i++a  +k+a   +++kv 
  CDO72240.1 139 AHINSWRSKYEKANHVVIVGGGAVGIETAgeVKEAWP-QKKKVT 181
                 56667778999************99988644777654.445554 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00077      0.77      37      83 ..       3      54 ..       1      73 [. 0.78
   2 ?    1.6   0.0      0.16   1.6e+02      41      94 ..     149     205 ..     131     247 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00077
                TT--E..EEEEEES-CCCHHHHHHHHCCC.....EEEEEEESSGGGGGGSSS CS
     DUF1188 37 eeeeleeknvlviGaYltGaaiakkLskk.....eevtlvDiephlkellek 83
                e++   ++nv+++G    G+ ia++Ls+k     ++++lv  +p   +l+ +
  CDO72240.1  3 EDKAQFPRNVVIVGGGWAGTLIARQLSAKldaskHRIILVNNRPFFIHLIAT 54
                5555559****************99875331114789999999999998876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
                 E..EEEEEES-CCCHHHHHHHHCC....CEEEEEEESSGGGGGGSSST...HHHHHHHHTT CS
     DUF1188  41 leeknvlviGaYltGaaiakkLsk....keevtlvDiephlkellekd...vefklsleev 94 
                  + ++v+++G   +G+ +a ++++    k++vtlv  e+ l     +d    +f+ ++e+ 
  CDO72240.1 149 EKANHVVIVGGGAVGIETAGEVKEawpqKKKVTLVHSENLL----LNDtypDKFRKDIEQR 205
                 257889999*9999999998877533325889998765543....3333444555555554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.027        27      28      50 ..       9      28 ..       5      43 .. 0.72
   2 ?    5.7   0.0    0.0081       8.1      28      46 ..     151     169 ..     145     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.027
                 --EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakgl 50
                 p +v+++GgG aG+     a++l
   CDO72240.1  9 PRNVVIVGGGWAGTLI---ARQL 28
                 568**********853...3333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0081
                  --EEEEESTSHHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiat 46 
                  + +v+++GgG +G++ +  
   CDO72240.1 151 ANHVVIVGGGAVGIETAGE 169
                  678**********998865 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.028        28      19      39 ..      11      31 ..       3      45 .. 0.82
   2 ?    5.3   0.0    0.0099       9.8      18      43 ..     152     178 ..     135     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.028
                EEEEE--SHHHHHHHHHHHHC CS
        Thi4 19 DvvivGaGssGLtaayylakk 39
                +vvivG+G +G   a+ l+ k
  CDO72240.1 11 NVVIVGGGWAGTLIARQLSAK 31
                79**************99987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0099
                 EEEEEE--SHHHHHHHHHHHHC.TTS- CS
        Thi4  18 sDvvivGaGssGLtaayylakk.pdlk 43 
                   vvivG+G+ G+ +a  + ++ p+ k
  CDO72240.1 152 NHVVIVGGGAVGIETAGEVKEAwPQKK 178
                 469**********99999988877654 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0061       6.1       3      22 ..      11      30 ..      10      43 .. 0.90
   2 ?    3.4   0.1     0.038        38       3      21 ..     153     171 ..     151     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0061
                   EEEEE--SHHHHHHHHHHHH CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLse 22
                   +V+IVG+G aG + a+ Ls 
     CDO72240.1 11 NVVIVGGGWAGTLIARQLSA 30
                   69**************9986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.038
                    EEEEE--SHHHHHHHHHHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLs 21 
                     V+IVG+G +G+ +a + +
     CDO72240.1 153 HVVIVGGGAVGIETAGEVK 171
                    69**********9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2719.19
//
Query:       CDO72241.1  [L=446]
Description: hypothetical protein BN946_scf184970.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.3   0.0    2.5e-07   31.0   0.0    1.7  1  RNase_H   RNase H
    5.2e-06   27.1   0.0    9.8e-06   26.2   0.0    1.4  1  zf-RVT    zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.8e-11   2.5e-07       3     142 ..     129     266 ..     127     267 .. 0.63

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.8e-11
                 SEEEEEEEEEECTTTCEEEEEEECTT...EEEEEEEC....CCCHHHHHHHHHHHHHHHTT.SC....SEEEEEES-HHHHHHHHCCCHHHHHTTSSSE CS
     RNase_H   3 avvvYtDGsclgnpgeggagavlykeg.arnisaple....eaqtnnraELsAvieaLkalksd....ekvniytDSkYvvkgitqwvhrwkknawktt 92 
                 a+ vYtDGs    +g  ga+a+ly  g a+ +  pl        t   aE+ A    ++ l+++    ++  i  D   +++ + + + ++   ++  t
  CDO72241.1 129 AYRVYTDGSDI--EGGVGAAALLYAPGrAQPRVLPLYlgpsTHHTVYEAEIVATLLGVELLRREthctQQASIALDNMAAIQ-ASE-LRTTGPARY-LT 222
                 5679*****55..33335555556555433333333232335778889******9999866555445566669999988888.555.333322222.23 PP

                 TTSSBHTTHHHHHHHHHCHC.SSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  93 seqkpvknkdlaellkelak.kkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 +    ++       lk + + + +++l+wv+gHa vp gNe+aD++Ak+aa
  CDO72241.1 223 D----LFH-AAVRNLK-IDRpNLRLTLRWVPGHADVP-GNEAADEAAKAAA 266
                 2....223.2233332.3333799************9.**********987 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.1e-09   9.8e-06      27      80 ..     334     387 ..     319     390 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.1e-09
      zf-RVT  27 kappkvkfflWlllknrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80 
                  +p ++  +l    +n++p ++ l++ g +  ++C+ C+qe Et+ H +++Cp 
  CDO72241.1 334 DIPRRHANLLVQFRTNHVPLQSYLHRFGRAPAATCPTCQQEPETVPHYLFACPT 387
                 68999999999999**************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3080.39
//
Query:       CDO72242.1  [L=241]
Description: hypothetical protein BN946_scf184970.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-24   85.9   0.0    4.8e-24   84.9   0.0    1.7  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   2.7e-28   4.8e-24       2     118 ..      19     130 ..      18     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 2.7e-28
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCT CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsg 100
                 ++G+t+++i+g d+ v+a+d+r ++g +++++  + K+f+++d+ ++a+ G aaD++++v++++++++ yr  + +++p++    ++a+++q +++ ++
  CDO72242.1  19 DNGGTILAIAGADFTVIAGDTRQSEGYSIQTRY-APKVFRLTDRAVLAVNGFAADGNMFVKKVKQRLEWYRHAHAKDMPLR----AIARLIQTMLYAQR 112
                 68***************************9999.7**********************************************....************** PP

                 TTTTSEEEEEEEEETTTE CS
  Proteasome 101 rrpfgvslliagvdeegg 118
                 + p++v  +++g+ e+g 
  CDO72242.1 113 FFPYYVYNILGGIEEDGS 130
                 **************8874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1771.60
//
Query:       CDO72243.1  [L=235]
Description: hypothetical protein BN946_scf184970.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-14   51.5   0.2    4.9e-09   35.9   0.1    3.1  3  adh_short     short chain dehydrogenase
    4.9e-11   42.6   0.0    5.2e-10   39.3   0.0    2.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0     0.002        18       2      26 ..       6      30 ..       5      32 .. 0.89
   2 !   35.9   0.1   5.4e-13   4.9e-09      60     121 ..      30      91 ..      27      94 .. 0.95
   3 !    8.3   0.0   0.00016       1.4     156     186 ..     113     144 ..     110     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.002
                EEEEESTTSHHHHHHHHHHHHTT-E CS
   adh_short  2 vvlvtGassGIGraiakelakeGak 26
                 v vtGassG+ r +a+ +++eG k
  CDO72243.1  6 LVSVTGASSGFRRLLAEIILEEGEK 30
                588*****************99976 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 5.4e-13
                 SHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHH CS
   adh_short  60 dreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlp 121
                 ++++++ ++ +a++ +g++dv+vnNA+ +  g+++++ ee+ + ++e+N+ g++++tr++++
  CDO72243.1  30 KAADISSAFHRAKDTFGRVDVVVNNAAFAALGEVKSVREEDARLMFETNFWGAIHVTREAVK 91 
                 678999****************************************************9976 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHGG.GTEEEEEEEESSBSSHH CS
   adh_short 156 vagltrslakelap.tgirvnavaPGlvdTdm 186
                 ++g+++sla e+ p ++i+v+ v P++++T+ 
  CDO72243.1 113 LEGFSESLAAEIDPsWNIKVTLVEPAGFETGG 144
                 789*********98356************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   5.8e-14   5.2e-10      52     118 ..      30      94 ..      21     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 5.8e-14
                   SHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCT CS
  adh_short_C2  52 deeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmk 118
                   + +++ +++ +++++fg++D++vnna++a    g++ ++ +e+ + ++++n+ ++++++++a++l  
    CDO72243.1  30 KAADISSAFHRAKDTFGRVDVVVNNAAFAAL--GEVKSVREEDARLMFETNFWGAIHVTREAVKLSP 94 
                   6789***************************..*****************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1751.20
//
Query:       CDO72244.1  [L=685]
Description: hypothetical protein BN946_scf184970.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 5061.16
//
Query:       CDO72245.1  [L=585]
Description: hypothetical protein BN946_scf184970.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-12   46.0   0.0    1.2e-11   45.0   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   6.5e-16   1.2e-11       9     109 ..     181     286 ..     173     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 6.5e-16
                 HHHHTTTTSEEEEEESSHH.HHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   9 llkleeeggkilifvntid.rlek....vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                 l+++  +g k l+f  +i+ +++      ++l  +++ +++ ++++ +++ re + ++f+ ge   L +td+ ++Gidip+++ V++  +  +++s++q
  CDO72245.1 181 LVETVLRGLKFLVFFDNIEeSIKAclvvRQWLPPEHHDRIVWFNADNTTRFRESTTAKFQCGELIGLFCTDAFGMGIDIPDIDIVVQWRPTCSLDSLWQ 279
                 3466689999*********6454355655666556689************************************************************* PP

                 HHTTSSS CS
  Helicase_C 103 riGRtgR 109
                 r GR++R
  CDO72245.1 280 RFGRAAR 286
                 ******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3829.17
//
Query:       CDO72246.1  [L=826]
Description: hypothetical protein BN946_scf184970.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.4   0.1        0.2   11.6   0.1    2.0  1  PuR_N     Bacterial purine repressor, N-terminal


Domain annotation for each model (and alignments):
>> PuR_N  Bacterial purine repressor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.1e-05       0.2      32      58 ..     392     418 ..     387     422 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
       PuR_N  32 aAKSsiSeDlaiikealekeglGklet 58 
                   +S iS+ +a+i+e++++ g+G +e+
  CDO72246.1 392 LNQSKISDNIAAIQEMFKQAGVGDVES 418
                 56799*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5777.06
//
Query:       CDO72247.1  [L=510]
Description: hypothetical protein BN946_scf184970.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.4e-103  344.8  22.4   9.2e-103  344.5  22.4    1.1  1  Sugar_tr  Sugar (and other) transporter
    2.3e-17   63.0  35.4    2.3e-17   63.0  35.4    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.025   15.1   0.5      0.044   14.3   0.5    1.4  1  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.5  22.4  1.5e-106  9.2e-103       2     452 .]      16     474 ..      15     474 .. 0.96

  Alignments for each domain:
  == domain 1  score: 344.5 bits;  conditional E-value: 1.5e-106
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 a+v++ g +lfgYdtg+ g+++++  f ++fg +  k++ +   ++  s+ +vs++++Ga++G+l + +l+  +GRk+sl i++++f++ga+lq +a g
  CDO72247.1  16 AFVVYWGIVLFGYDTGIGGGVVAQDYFRSHFGITALKGQAQVkkANEISSNVVSVLQAGAFFGALGSAPLSAAVGRKWSLFIFTIIFSVGAILQTVAGG 114
                 78999999***********************98877765444558999*************************************************** PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPry 197
                  + +  ++ gRv++G+g+G++s+++P +++E +pk++Rg++++l+q ++++G +++++++l          wri++g+qlv+  l++i+ll++ ESPr+
  CDO72247.1 115 SRGLGYIYGGRVVAGLGIGAISAVSPAFVAECSPKDVRGRITGLFQIGVAIGVMLSYFINL----------WRIPFGFQLVLVGLMAIGLLTIKESPRW 203
                 **********************************************************987..........**************************** PP

                 HHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.. CS
    Sugar_tr 198 lvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.. 289
                 l +kg+  ea + l+ lr  +++d+ + +e++++ea+ eee        wke +  k+++ r++i+vv+ ++qq +G n++ yy+p+if ++g++ +  
  CDO72247.1 204 LASKGRMAEALANLSYLRRRSPDDPTIRAEMAEIEAAIEEErearaGLGWKEAFFGKGNLIRFVIAVVIFLLQQWSGQNSVGYYAPQIFTSIGYTGTsn 302
                 *************************************999999999999*********************************************99889 PP

                 .HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS.........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHH CS
    Sugar_tr 290 .llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilg..ivalllvaks......kaasivaivfialfialfalgwgpvpwvlvsEl 378
                  ll+++i+g+v++vat v  +fl d +GR+  l+++a+gm i+f+i+g     ++ +++         as ++ +++++++ +++lgwgp+pwv+v+++
  CDO72247.1 303 sLLASGIYGIVKVVATAVFvFFLADTLGRKLSLFISAMGMGILFFIIGalLKSFPPPSNArvggdpPPASKAMAAMLYIYVLMYSLGWGPIPWVYVADI 401
                 9***************998679**************************87666666666689999999******************************* PP

                 SHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 379 fpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 fp+++R  +la+a a++wl+nf+++ ++ ++  ++g ++ fl+f+ +++ ++ +  + +petkgr+lee++ +f
  CDO72247.1 402 FPTRTRHYGLAVASASQWLFNFVVAKVTLTLETNLG-YKLFLMFGTINIGGMAVFALLIPETKGRSLEEMDIIF 474
                 ************************************.*********************************9876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0  35.4   3.9e-21   2.3e-17       5     344 ..      23     417 ..      19     426 .. 0.69
   2 !    5.0  12.6    0.0016       9.4      50     178 ..     320     465 ..     318     472 .. 0.75

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 3.9e-21
       MFS_1   5 aflsalarsilgpalpl.alaedlgispse..........igl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa...sslwl 87 
                 ++l +++ +i g ++ + +  +++gi++            i+  ++++  +ga++++l  ++ls  +Gr++ l++  ++f++g ++l  +a    +l +
  CDO72247.1  23 IVLFGYDTGIGGGVVAQdYFRSHFGITALKgqaqvkkaneISSnVVSVLQAGAFFGALGSAPLSAAVGRKWSLFIFTIIFSVG-AILQtVAggsRGLGY 120
                 5666666666667777777777777444443333333333333588888889999999999999999****999999999999.555545567555669 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspke 186
                 ++ +rv++Glg ga+ +++ a++a+ +pk+ rgr +gl+++    G+++g +l+ ++     Wr +f +  ++  l+++    ll+ ++++r+  s+ +
  CDO72247.1 121 IYGGRVVAGLGIGAISAVSPAFVAECSPKDVRGRITGLFQI----GVAIGVMLSYFIN---LWRIPFGFQLVLVGLMAI---GLLTIKESPRWLASKGR 209
                 **********************************9988766....5555556667777...7***************99...99999999999999999 PP

       MFS_1 187 ee..................................kgtgpaplvp..awk.allkdpvlw....illialllfffgfsglltllplylqevlglsgll 244
                                                     + +         +wk a++ +  l     +++i ll  + g +++ ++ p +  +  g++g  
  CDO72247.1 210 MAealanlsylrrrspddptiraemaeieaaieeerEAR------AglGWKeAFFGKGNLIrfviAVVIFLLQQWSGQNSVGYYAPQI-FTSIGYTGTS 301
                 9899****9999999998888888888888665433333......24445504555555533332233333333666666*******7.9******556 PP

       MFS_1 245 laglllallalvgail.allagrlsdrlgr.....rrrlllallllllaalglallavt................ssavllllvlvl....iGfglgfv 317
                  ++l+++++++v +++ a+++ +l+d lgr       ++ +++l+++++al+      +                s +++++ +l++    +++g+g  
  CDO72247.1 302 NSLLASGIYGIVKVVAtAVFVFFLADTLGRklslfISAMGMGILFFIIGALLK-----SfpppsnarvggdpppaS-KAMAA-MLYIyvlmYSLGWG-- 391
                 66666666666666665668888889999933333333333444444444444.....256666999999888742.22222.33331112444555.. PP

       MFS_1 318 fpsllalasdlappeeagtasglfnta 344
                  p+ +++++d +p++ +   +++++  
  CDO72247.1 392 -PIPWVYVADIFPTRTRHYGLAVASAS 417
                 .88999999999988777666666654 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0016
       MFS_1  50 lplGrlsdrfGrrrvlllglllfalg.lllll.f......ass.........lw.lllvlrvlqGlgagalf.pagaaliadwfpkeergraigllsag 129
                 +++ +l+d +Gr+  l++++ ++++  +++++ +      + +            +++++  +  l++++++ p+  +++ad+fp + r  +++++sa+
  CDO72247.1 320 VFVFFLADTLGRKLSLFISAMGMGILfFIIGAlLksfpppS-NarvggdpppASkAMAAMLYIYVLMYSLGWgPIPWVYVADIFPTRTRHYGLAVASAS 417
                 677799********777777777777344444424434430.2444455555333677777777777766663677799******************** PP

       MFS_1 130 fslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                   l   + + +   l ++lg+  +f++++ + + ++ +f+ll+pe++ +
  CDO72247.1 418 QWLFNFVVAKVTLTLETNLGYK-LFLMFGTINIGGMAVFALLIPETKGR 465
                 *****99999999999****98.89999999999999989998887765 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   7.3e-06     0.044       4      48 ..     207     251 ..     204     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.3e-06
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48 
                  g+ aeAla l+++   +p+++ +r+ +Ae+  a  +  eA+a L
  CDO72247.1 207 KGRMAEALANLSYLRRRSPDDPTIRAEMAEIEAAIEEEREARAGL 251
                 6999****************************9999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3656.55
//
Query:       CDO72248.1  [L=231]
Description: hypothetical protein BN946_scf184970.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1734.05
//
Query:       CDO72249.1  [L=88]
Description: hypothetical protein BN946_scf184970.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-33  113.0   4.6    6.1e-16   58.2   0.7    2.1  2  Con-6          Conidiation protein 6
  ------ inclusion threshold ------
      0.044   13.2   0.0      0.049   13.1   0.0    1.1  1  Adeno_hexon_C  Hexon, adenovirus major coat protein, C-termin
      0.079   12.8   0.8          2    8.2   0.1    2.2  2  LacI           Bacterial regulatory proteins, lacI family


Domain annotation for each model (and alignments):
>> Con-6  Conidiation protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.2   2.6e-19   1.6e-15       2      34 .]       4      36 ..       4      36 .. 0.97
   2 !   58.2   0.7     1e-19   6.1e-16       3      33 ..      55      85 ..      53      86 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 2.6e-19
       Con-6  2 penvirGyKAtLsNPnvSeeAKehAkeeLeklg 34
                p+++i+G+KA+++NP vS+eAKeh+++ +++l+
  CDO72249.1  4 PTRQIGGHKAAINNPKVSDEAKEHSRQAIDELE 36
                89*****************************97 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 1e-19
       Con-6  3 envirGyKAtLsNPnvSeeAKehAkeeLekl 33
                 ++ +GyKAtL+NPnvSeeAKehAke+Le+ 
  CDO72249.1 55 VRQNAGYKATLKNPNVSEEAKEHAKEVLEER 85
                58899************************96 PP

>> Adeno_hexon_C  Hexon, adenovirus major coat protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.2e-06     0.049     169     221 ..      21      74 ..       6      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-06
                    -B--TTSSSSSSSTT-----S.TTSSSSS----TTT--TTSSS-SSSS---S-- CS
  Adeno_hexon_C 169 srqvpdyldttlydlltativ.vqdttsatsrdiirnnsgleakrsnpslsaqt 221
                    s ++ +++ +++ +l +   +   +++ +  +d +r+n+g++a   np +s++ 
     CDO72249.1  21 SDEAKEHSRQAIDELESQPETqETRAGYEEDKDEVRQNAGYKATLKNPNVSEEA 74 
                    5666677778876666654431346677899******************99876 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00034         2      22      45 ..      16      39 ..      13      40 .. 0.89
   2 ?    3.0   0.1     0.015        87      23      40 ..      67      84 ..      64      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00034
                TSSSSTHHHHHHHHHHHHHTTB-T CS
        LacI 22 nkerVseetrerVeaameelnYiP 45
                n+++Vs+e +e   +a++el+ +P
  CDO72249.1 16 NNPKVSDEAKEHSRQAIDELESQP 39
                6789***************98666 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.015
                SSSSTHHHHHHHHHHHHH CS
        LacI 23 kerVseetrerVeaamee 40
                +++Vsee +e   +++ee
  CDO72249.1 67 NPNVSEEAKEHAKEVLEE 84
                689*******99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1179  (0.0657594); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 574.59
//
Query:       CDO72250.1  [L=989]
Description: hypothetical protein BN946_scf184970.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-21   77.0   0.0    3.4e-21   76.1   0.0    1.5  1  ERCC4     ERCC4 domain


Domain annotation for each model (and alignments):
>> ERCC4  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   1.9e-25   3.4e-21       1     153 [.     750     897 ..     750     900 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1.9e-25
                 EEGGGCTSHHHH..HHTTTSEEEEE--SSSSE.EE...CTT...............EEEEEEEHHHHHHHHCCSHHHHHHHHHHH.H-SEEEEEEES.. CS
       ERCC4   1 iDsrelksgieeylleelgvevvietlpigdyilwrrkvkaeynleldieepceekvlverksaddlvasikdgrleeqvsrlkrngykkpillveg.. 97 
                 +D+re++s+++   l+  g+ v + tl++gdy ++   +++               ++verks+ dlv+s+++grl+ q++ ++  +yk pill+e   
  CDO72250.1 750 VDMREFRSSLPSL-LHASGLLVLPVTLTVGDY-IL---TPD---------------ICVERKSIPDLVSSFNSGRLYTQCELMSA-HYKQPILLIEFee 827
                 8************.******************.99...999...............*****************************.***********86 PP

                 .....-GGGTT........................THHH.HHHHHHHHHHHH.S-EEEEESSHHHHHHHH CS
       ERCC4  98 .....ldqykrknknsrnkqykakvrq........inrktiesaLvqlqldf.gvsilttesanetaewl 153
                      l++    + + ++++y+ k             +++i+s+Lv l+l+f +v+il+++s+  tae+ 
  CDO72250.1 828 hksfsLEAVADVKAYAKSNKYPPKKKGdpradnasSAAQSIQSKLVLLTLTFpRVRILWSSSPYATAEIF 897
                 4444444444444444455544444448887776544447***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 6184.27
//
Query:       CDO72251.1  [L=200]
Description: hypothetical protein BN946_scf184970.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1494.21
//
Query:       CDO72252.1  [L=427]
Description: hypothetical protein BN946_scf184970.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.52   11.3  11.9        2.6    9.1   0.6    3.9  3  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.1    0.0012        22       2      23 ..      11      30 ..      10      31 .. 0.80
   2 ?    9.1   0.6   0.00015       2.6       1      24 []      35      61 ..      35      61 .. 0.94
   3 ?    0.8   0.1     0.066   1.2e+03       6      24 .]      83     101 ..      81     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkth 23
                 C++Cgk+   k++L rH ++h
  CDO72252.1 11 HCDQCGKRV--KRDLARHKRSH 30
                6****6666..67789999999 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
   zf-C2H2_4  1 fkCpi..C.gksFsskkaLlrHlkthH 24
                f+Cp+  C g+ F+ ++++ +H+++ H
  CDO72252.1 35 FRCPWpvCkGRGFRQRSNIIHHVEKWH 61
                7899999*****************999 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.066
   zf-C2H2_4   6 CgksFsskka.LlrHlkthH 24 
                 C + F +  + L rH + +H
  CDO72252.1  83 CAAHF-DEGSvLTRHRREQH 101
                 77788.55554999**9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3050.68
//
Query:       CDO72253.1  [L=232]
Description: hypothetical protein BN946_scf184970.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-51  174.0   0.1    3.2e-51  173.8   0.1    1.1  1  Rot1      Chaperone for protein-folding within the ER, fungal


Domain annotation for each model (and alignments):
>> Rot1  Chaperone for protein-folding within the ER, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.1   1.8e-55   3.2e-51       1     162 [.      33     191 ..      33     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.8e-55
        Rot1   1 lvGtWssksnkvltGpgfydpveekliePsltGisysFteDGfyEealyrvvanpknpsCpkavlqfqHGtyeleangslvltPievDGRqllsdpCkk 99 
                 ++GtWss s++v+tG +f +p + +++ P  tG+sysF+++G+yE a yr ++n + p+C ++vl + HG+y+l +ngs+ l P + DG q+++dpC++
  CDO72253.1  33 ITGTWSSGSKQVVTG-KFANPSNLSFNYPPTTGVSYSFADNGWYEVARYRFNGNGSLPNCITGVLNWHHGHYQLLDNGSILLIP-NGDGYQQIQDPCAA 129
                 68*************.5*******************************************************************.56************ PP

        Rot1 100 kkstytrynqselfkkyevlvdeyhgvkrlnlyqfdgspmqplylaykppqmlPtetlnptek 162
                 +++ +  yn +el++++++++d  ++  +l++++fdg+p++pl+ +y+pp+mlP ++l  ++ 
  CDO72253.1 130 ETNFIENYNDTELYQRWQIFMDL-NDGPKLHIFEFDGTPVAPLFQIYNPPSMLPPTQLRNVTP 191
                 *********************96.56689************************9888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1657.84
//
Query:       CDO72254.1  [L=312]
Description: hypothetical protein BN946_scf184970.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-09   36.3   1.0    6.5e-09   35.8   1.0    1.2  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    1.2e-05   25.1   0.0      3e-05   23.8   0.0    1.7  2  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   1.0   7.2e-13   6.5e-09       4      38 ..      92     126 ..      89     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7.2e-13
                      BEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEE CS
  Glycos_transf_3   4 lvDivgTGGdgantfNiStaaaivvAaaGvkvakh 38 
                      +vDivg GGdg+ntf +S +aaiv+A+aG++v+k 
       CDO72254.1  92 VVDIVGRGGDGHNTFDVSPTAAIVAAGAGARVVKV 126
                      79*******************************95 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.4e-09     3e-05       3      62 ..      15      78 ..      13      79 .. 0.90
   2 ?   -2.7   0.0      0.63   5.6e+03      45      57 ..     170     182 ..     166     182 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.4e-09
                     HHHHHHTT..---HHHHHHHHHHHHT.TSS-HHHHHHHHHHHHHH-..--HHHHHHHHHHHHHH CS
  Glycos_trans_3N  3 iikklrdg.eeLtaeeirfaihgilk.gevtdaqiaAfLmAlrlkG..etaeEiaalaeAmres 62
                     ++ kl++  e  ta++   a++ i++ + v+++qi++fL+Al++ +    ++ + a+a ++r++
       CDO72254.1 15 LLGKLVKTpEYYTADDFTLALECIFTpDVVPPVQIGSFLTALHIERveRRPDFLQAAANVLRKR 78
                     677888886689**************999*****************999999999999999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.63
                      H---HHHHHHHHH CS
  Glycos_trans_3N  45 kGetaeEiaalae 57 
                         tae +a++a+
       CDO72254.1 170 EPATAEDLANAAR 182
                      5568899998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2200.41
//
Query:       CDO72255.1  [L=147]
Description: hypothetical protein BN946_scf184970.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-14   52.6   2.7    6.5e-14   52.1   2.7    1.2  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    4.4e-06   26.4   0.0    6.9e-06   25.8   0.0    1.3  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   2.7   7.2e-18   6.5e-14       4      41 ..      92     129 ..      89     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 7.2e-18
                      BEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-S CS
  Glycos_transf_3   4 lvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnr 41 
                      +vDivgTGGdg+ntfN+St+aaiv+A+aG++v+k + r
       CDO72255.1  92 VVDIVGTGGDGHNTFNVSTTAAIVAAGAGARVVKVSMR 129
                      79********************************9876 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   7.7e-10   6.9e-06       3      62 ..      15      78 ..      13      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 7.7e-10
                     HHHHHHTT..---HHHHHHHHHHHHT.TSS-HHHHHHHHHHHHHH-..--HHHHHHHHHHHHHH CS
  Glycos_trans_3N  3 iikklrdg.eeLtaeeirfaihgilk.gevtdaqiaAfLmAlrlkG..etaeEiaalaeAmres 62
                     ++ kl++  e  ta++   a++ i++ + v+++qi++fL+Al++ +    ++ + a+a ++r++
       CDO72255.1 15 LLGKLVKTpEYYTADDFTLALECIFTpDVVPPVQIGSFLTALHIERveRRPDFLQAAANVLRKR 78
                     677888886699**************999*****************999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1094.81
//
Query:       CDO72256.1  [L=436]
Description: hypothetical protein BN946_scf184970.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3379.42
//
Query:       CDO72257.1  [L=141]
Description: hypothetical protein BN946_scf184970.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1137.81
//
Query:       CDO72258.1  [L=323]
Description: hypothetical protein BN946_scf184970.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-27   95.2   0.0    1.4e-24   86.6   0.0    2.0  2  adh_short        short chain dehydrogenase
    2.8e-17   63.1   0.0    2.1e-16   60.2   0.0    2.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    8.6e-09   35.5   0.0    1.3e-08   35.0   0.0    1.2  1  KR               KR domain
     0.0015   18.1   0.0     0.0024   17.4   0.0    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0041   17.4   0.2       0.01   16.1   0.1    1.7  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
        0.1   13.1   0.1        0.2   12.1   0.1    1.4  1  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   4.7e-28   1.4e-24       1     141 [.      33     179 ..      33     188 .. 0.94
   2 !    6.7   0.0    0.0015       4.5     146     188 ..     199     241 ..     191     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 4.7e-28
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 +vv+vtG+ sGIG+++ k+l++ +akv++++rs +k+e+++++lk++ g++a+++++D+++ ++++++ ++  +k  +l++L nNAG+    p+  l++
  CDO72258.1  33 RVVIVTGGNSGIGYETIKALLQHNAKVYMASRSRDKAEAAIAKLKDAtGKEAIFLELDLSSLASIKRAAKEFLAKERELHILFNNAGV-MWPPVDWLTK 130
                 59*********************************************9****************************************.6778888999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH......HCTTEEEEEEEEGGGTS CS
   adh_short  99 eewervievNltgvflltravlpaml......kqssGrIvnvsSvagkv 141
                 + ++  + +N+ g f  t++++pa+l        + +r++++sS  + +
  CDO72258.1 131 DGYDLQFGTNVLGHFYFTELLMPALLagvessPDHHARVITTSSFGAYM 179
                 99**********************9999988778999******987755 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
                 BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short 146 vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                  a Y  sK++ +  ++++a+ +a++gi  ++v+P +++   + 
  CDO72258.1 199 EALYYQSKFGNVVVAHEIARRYADKGIISISVNPDGTAAICTS 241
                 678999********************99999999888765555 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     7e-20   2.1e-16       4     139 ..      42     185 ..      37     262 .. 0.91

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 7e-20
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   sgIG+++ kal ++ a+v ++ +++++ ++++++l++++g+e + le+D ++ ++++++++e  +k  +l+il+nnag++ +   p+  ++++++d 
    CDO72258.1  42 SGIGYETIKALLQHNAKVYMASRSRDKaEAAIAKLKDATGKEaIfLELDLSSLASIKRAAKEFLAKERELHILFNNAGVMWP---PVDWLTKDGYDL 135
                   8**************************99***********88547*************************************...9999******** PP

                   HHHHHTHHHHHHHHHHHHHCTSC........CEEEEEEEGGGTSBSTTTT CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg........gsivnlssvgaervvpnyn 139
                    + +n+ + f++++ ++p++ +g        ++++++ss+ga + + ny+
    CDO72258.1 136 QFGTNVLGHFYFTELLMPALLAGvesspdhhARVITTSSFGAYMETLNYD 185
                   ******************555555667888899********988777775 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   4.3e-12   1.3e-08       3      92 ..      35     121 ..      33     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 4.3e-12
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92 
                 +++tGG  g+G e+++ l+++ a ++ + sRs   +++++a ia+l++  g e  ++++D+s+ ++++++ +e+ a+e++++  ++ Agv+
  CDO72258.1  35 VIVTGGNSGIGYETIKALLQHNA-KVYMASRS---RDKAEAAIAKLKDAtGKEAIFLELDLSSLASIKRAAKEFLAKERELHILFNNAGVM 121
                 79*****************9976.68999999...567778999999977***************************************97 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.1e-07    0.0024       1      63 [.      35     104 ..      35     228 .. 0.89
   2 ?   -3.3   0.0       1.6   4.8e+03     153     170 ..     239     257 ..     236     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.1e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee 63 
                 ++VtG++  iG  ++kall+++ +v   +r +++ + a +++l         + eldl   ++++r+ ke+
  CDO72258.1  35 VIVTGGNSGIGYETIKALLQHNAKVYMASRSRDKAEAA-IAKLkdatgkeaIFLELDLSSLASIKRAAKEF 104
                 68**********************99999996655544.4445588**************99888877764 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHHH.T-EEEEEEES CS
   Epimerase 153 veayaaqy.glnaiilrlf 170
                 ++++ ++  g+na+il ++
  CDO72258.1 239 CTSASQEDhGWNATILYPT 257
                 5555444449999999775 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.5e-06      0.01       2      68 ..      36     102 ..      35     107 .. 0.87
   2 ?   -2.9   0.0       2.5   7.4e+03      13      43 ..     212     241 ..     210     255 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.5e-06
                      EEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHT CS
  Sacchrp_dh_NADP   2 liiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallk 68 
                      ++ G+  ++G  +++ l++h+    ++  a+rs++k+ea++ak+   +g+++++ +ld +  ++ ++++ k
       CDO72258.1  36 IVTGGnSGIGYETIKALLQHNA---KVYMASRSRDKAEAAIAKLkdaTGKEAIFLELDLSSLAS-IKRAAK 102
                      56666679************97...6***************9999999**********999999.777665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                      HHHHHHCTCCT-GEEEEEESSHHHHHHHHCH CS
  Sacchrp_dh_NADP  13 vaellarhfdvdaeitvadrskeklealaak 43 
                      va+++ar+    + i+ ++ + ++ +a++ +
       CDO72258.1 212 VAHEIARRYAD-KGIISISVNPDGTAAICTS 241
                      66677776554.3666666666666666655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.7e-05       0.2       4      92 ..      29     118 ..      27     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
  NAD_binding_7   4 dlkgkkvlvvGgGe.vAarkvrklleagakvtvvapevkeeleelvklaeeel.ekdlegadlviaatddrelneriaeaakarrilvnva 92 
                    dl+g+ v+v Gg++ ++++ ++ ll+ +akv + +    ++   + kl++ +  e+ + + dl   a  +r+ +e +a++ +  +il+n a
     CDO72258.1  29 DLTGRVVIVTGGNSgIGYETIKALLQHNAKVYMASRSRDKAEAAIAKLKDATGkEAIFLELDLSSLASIKRAAKEFLAKERE-LHILFNNA 118
                    6888889999887559*****************9999555555555666555435667778888888877777777776665.88888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2291.37
//
Query:       CDO72259.1  [L=143]
Description: hypothetical protein BN946_scf184970.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-57  191.3   2.9    8.1e-57  191.1   2.9    1.0  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   2.9   4.5e-61   8.1e-57       1     141 [.       1     142 [.       1     143 [] 0.98

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 4.5e-61
                     -EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS.-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHH CS
  Clat_adaptor_s   1 mikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdskl.sniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdky 94 
                     mi++il++n++gk+rl k+y+++dd++k +l  ev++lv+ Rd+k+ sn+ve++++k++Y+rya+L+F+++vd ++nel++le+ihlfve+Ld +
      CDO72259.1   1 MIRFILVQNRQGKTRLSKWYVPYDDDEKVRLRGEVHRLVAPRDQKYqSNFVEFRNHKIVYRRYAGLFFCICVDANDNELAYLEAIHLFVEVLDSF 95 
                     89******************************************988************************************************ PP

                     CTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHHH CS
  Clat_adaptor_s  95 fgnVceldlvfnfekvylildEivsgGeiletskkevlkrvelldkl 141
                     f nVceldlvfnf+kvy+ildE++ +Gei etsk+ vl+r+e+l+kl
      CDO72259.1  96 FDNVCELDLVFNFYKVYAILDEVFLAGEIEETSKDVVLARLEQLEKL 142
                     *******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 995.38
//
Query:       CDO72260.1  [L=467]
Description: hypothetical protein BN946_scf184970.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-97  327.1   0.3    3.3e-52  177.7   0.2    2.9  2  Gpi16     Gpi16 subunit, GPI transamidase component


Domain annotation for each model (and alignments):
>> Gpi16  Gpi16 subunit, GPI transamidase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0   2.2e-46   3.9e-42     112     242 ..       8     134 ..       3     153 .. 0.88
   2 !  177.7   0.2   1.9e-56   3.3e-52     349     539 ..     182     436 ..     137     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 2.2e-46
       Gpi16 112 eadakwlkLtnaLsGlfCaslnfidstrttrPalsfqpegdhses.eklkllygslPrevvCtENLtpflkLLPckgkaGissLLdghklfdasyqsms 209
                 ++d++w+ L n+L+GlfCasl  +d++rtt+P+l+fqpeg+ ++    ++l++++lP+e vCtENLtpflkLLPck+ +Gi+ LL++h++fda++++++
  CDO72260.1   8 SVDERWQGLRNSLAGLFCASLGHLDDQRTTSPTLTFQPEGSLPNFtYPHQLRHATLPSEHVCTENLTPFLKLLPCKSLSGIAHLLNPHRVFDADWHGLG 106
                 4699*************************************888768899************************************************* PP

       Gpi16 210 idvrpvceeeeseckleleqtidlvldverskr 242
                 ++vr  +     ++ +e++   ++v+d+ r ++
  CDO72260.1 107 VHVRYRE-----RVGVEVRLAFQAVFDPVRYSH 134
                 ***8886.....777777777788887765543 PP

  == domain 2  score: 177.7 bits;  conditional E-value: 1.9e-56
       Gpi16 349 pleepllyaersltgsgqerGglqiiltnpsaseevefvyfeslPWfvrvylhtLkvelddk...................................ae 412
                   + + ++++r l g +q +  l  ++tn+    +v+  y+e++PW +++ylhtL +++dd+                                   a 
  CDO72260.1 182 VSSLTDISVRRNLKGTSQADAHLTLEVTNNL-PVRVKTGYLETMPWHLQFYLHTLCAHVDDSqrgkyqsylphtgvsilcpmwllalgldegtpidaAL 279
                 3357789************************.679**************************99******************************998867 PP

       Gpi16 413 kksesevikelyyrPaldrkrptqlelllelPaestvvltydfekaiLryteYpPDAnrGfdiaaAvitv.......................leekss 488
                  ++++++++ l+y P +  +rp+ l+  l+lP+++t++lt+d+ k +Lryte+pPDA+rG+d+++Av+                         +     
  CDO72260.1 280 FHRPDDLVNILSYTPPVPHSRPALLQAVLTLPPHTTLRLTMDVSKPFLRYTEHPPDAQRGWDLPPAVLVPfafgeedrpefdpspsnepnstwV----- 373
                 7999***************************************************************988787777777777666555555551..... PP

       Gpi16 489 ea.............velrttslLlsLptPDfSMPYNViiltsTvlaLafGslfnlltrrfvae 539
                  +              +++t ++L++L tPDfSMPYNVii+++T++aL+fGs+fnlltrrfv +
  CDO72260.1 374 -ErrvssyprrhsrpRRIYTPVMLVDLATPDFSMPYNVIIMSCTLIALIFGSVFNLLTRRFVVV 436
                 .05555556666666**********************************************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3155.75
//
Query:       CDO72261.1  [L=804]
Description: hypothetical protein BN946_scf184970.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-87  289.8   0.0    1.8e-42  144.9   0.0    2.3  2  AAA              ATPase family associated with various cellul
    4.4e-23   80.8   0.2    2.1e-12   46.7   0.1    2.7  2  AAA_lid_3        AAA+ lid domain
    8.2e-13   48.5   0.0    3.2e-07   30.4   0.0    4.0  2  AAA_5            AAA domain (dynein-related subfamily)
    1.6e-12   48.2   2.0    4.1e-05   24.0   0.1    4.1  4  AAA_16           AAA ATPase domain
    5.7e-12   45.7   0.0    0.00034   20.4   0.0    3.6  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    8.9e-09   35.7   0.0     0.0015   18.7   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.4e-07   31.9   0.1     0.0034   17.6   0.0    4.1  4  AAA_22           AAA domain
    1.7e-07   31.5   0.0    0.00036   20.7   0.0    2.5  2  AAA_33           AAA domain
    4.7e-06   26.5   0.0      0.001   18.8   0.0    2.3  2  IstB_IS21        IstB-like ATP binding protein
    1.2e-05   24.7   0.0      0.011   15.0   0.0    2.7  3  TIP49            TIP49 P-loop domain
    1.7e-05   24.8   0.0       0.11   12.5   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    2.9e-05   24.1   0.0       0.12   12.4   0.0    2.3  2  AAA_14           AAA domain
     0.0001   22.2   0.0      0.015   15.1   0.0    2.2  2  AAA_11           AAA domain
    0.00027   21.3   0.0       0.11   12.9   0.0    2.4  2  RNA_helicase     RNA helicase
    0.00031   20.7   0.0      0.072   13.0   0.0    3.8  3  NACHT            NACHT domain
    0.00039   20.0   0.0       0.26   10.8   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
    0.00081   18.8   0.2       0.31   10.4   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0011   19.2   0.0      0.091   13.0   0.0    2.6  2  AAA_28           AAA domain
     0.0021   18.0   0.0        1.5    8.6   0.0    2.5  2  AAA_3            ATPase family associated with various cellul
     0.0022   18.0   0.0       0.11   12.4   0.0    2.6  2  Rad17            Rad17 P-loop domain
     0.0024   18.4   0.0     0.0087   16.6   0.0    2.0  2  AAA_18           AAA domain
     0.0032   17.1   1.4        1.5    8.3   0.1    3.8  4  AAA_25           AAA domain
     0.0036   17.2   0.0       0.69    9.7   0.0    3.4  4  Bac_DnaA         Bacterial dnaA  protein
     0.0054   16.0   0.0      0.066   12.5   0.0    2.3  2  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.018   14.8   0.1       0.21   11.3   0.0    2.5  2  AAA_30           AAA domain
      0.021   14.6   0.0       0.83    9.3   0.0    2.2  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.022   13.9   0.0        3.7    6.6   0.0    2.5  3  DUF815           Protein of unknown function (DUF815)
      0.023   14.4   0.0       0.67    9.6   0.0    2.9  2  Sigma54_activat  Sigma-54 interaction domain
      0.024   15.1   0.0       0.44   11.0   0.0    2.4  2  ABC_tran         ABC transporter
      0.043   13.6   0.0       0.33   10.6   0.0    2.2  2  AAA_24           AAA domain
      0.043   13.0   0.0       0.13   11.4   0.0    1.7  2  DAP3             Mitochondrial ribosomal death-associated pro
      0.047   13.0   0.0        4.4    6.6   0.0    2.3  2  ATPase           KaiC
      0.049   13.1   0.0        0.4   10.1   0.0    2.2  2  PhoH             PhoH-like protein
      0.053   13.8   0.0       0.95    9.8   0.0    2.4  2  AAA_19           AAA domain
        0.1   11.5   0.0       0.88    8.4   0.0    2.2  2  AFG1_ATPase      AFG1-like ATPase
       0.12   11.5   0.0       0.29   10.2   0.0    1.5  2  Parvo_NS1        Parvovirus non-structural protein NS1
       0.13   12.4   0.0        3.3    7.8   0.0    2.4  2  Sigma54_activ_2  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   3.7e-45   1.8e-42       1     131 [.     295     431 ..     295     432 .. 0.98
   2 !  142.8   0.0   1.6e-44   7.8e-42       1     131 [.     575     706 ..     575     707 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 3.7e-45
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 vll+GppGtGKT la+a+a ++++++l ++g+el s y ge+e++ir++f+ea++ + p+i+++DE+da++++r +g   e+e+rvv+qLlt +dg+++
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSSVLIVNGPELSSAYHGETEARIRDVFAEARSRS-PCIIVLDEVDAICPRReDGPGGEVEKRVVAQLLTLMDGMEE 392
                 79******************************************************9.****************8888********************* PP

                 S.....SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  99 k.....eskvivigatnrpdkldpallr.gRfdrkieie 131
                       ++kv+v+++tnrp+ +dpal+r gRfdr+iei+
  CDO72261.1 393 AgkdgsQGKVVVVATTNRPNAIDPALRRpGRFDREIEIG 431
                 ******999***************************986 PP

  == domain 2  score: 142.8 bits;  conditional E-value: 1.6e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvk 97 
                 vllyGppG+ KTll++a a+e+gv+fl ++g+ell+kyvgese+ +re+f++a++ a psi+f+DEidala+sr  s+s  + ++ v+  Ll+e+dgv+
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATESGVNFLAVKGPELLNKYVGESERAVREIFSKARAAA-PSIIFFDEIDALATSRngSDSGGGAHDGVLTSLLNEMDGVQ 672
                 79******************************************************9.****************8877888999*************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +  + v++++atnrpd++d+al+r gR+dr+++++
  CDO72261.1 673 QLVG-VTIVAATNRPDTIDSALMRpGRLDRILYVG 706
                 *877.**************************9986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.4e-10   1.1e-07       3      34 ..     457     488 ..     455     501 .. 0.90
   2 !   46.7   0.1   4.3e-15   2.1e-12       2      36 ..     730     764 ..     729     785 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.4e-10
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrg 34 
                 dl  +A++ +Gy+GADl+a++reA+ l+++r 
  CDO72261.1 457 DLRSIAAKAHGYVGADLSAVVREAGTLTIKRW 488
                 8999************************9995 PP

  == domain 2  score: 46.7 bits;  conditional E-value: 4.3e-15
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 +dl+e+A++TeG+SGA++ alc+eAall+++r+i 
  CDO72261.1 730 LDLEEIASMTEGCSGAEMTALCQEAALLTMKRDIN 764
                 69******************************986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   6.7e-10   3.2e-07       1      79 [.     294     365 ..     294     421 .. 0.63
   2 !   12.6   0.0   0.00021     0.099       1      76 [.     574     642 ..     574     696 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 6.7e-10
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngtt.slvdsplvraar..egeilvlDEveraes 79 
                 +vlL GppGtgK+ la+ +aa +n++v++v++++      l   ++  ++t+ + +d  +  +ar  +++i+vlDEv+ + +
  CDO72261.1 294 GVLLHGPPGTGKTHLARAIAASTNSSVLIVNGPE------LSSAYH--GETEaRIRDVFA--EARsrSPCIIVLDEVDAICP 365
                 59******************************99......555555..222203344444..44445**********97654 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00021
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEver 76 
                 +vlL GppG+ K+ l++  a   + +++ v +++       + ++    g+ ++   ++  +ar   ++i+++DE++ 
  CDO72261.1 574 GVLLYGPPGCSKTLLVRACATESGVNFLAVKGPEL------LNKYV---GESERAVREIFSKARaaAPSIIFFDEIDA 642
                 59****************99999999999988874......44444...22222223333344434777777777775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   8.4e-08   4.1e-05       4      51 ..     262     319 ..     260     331 .. 0.79
   2 ?    2.0   0.0      0.49   2.4e+02     122     146 ..     339     362 ..     324     392 .. 0.72
   3 !   16.9   0.2   1.3e-05    0.0063      19      62 ..     567     607 ..     547     645 .. 0.79
   4 ?    0.5   0.0       1.5   7.1e+02     122     148 ..     619     644 ..     616     669 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 8.4e-08
      AAA_16   4 GReeeleqLlsale.rvrsgrp.........elvllsGesGvGKsslvrellralekd 51 
                 G ++++ q+++++e ++ +++          + vll+G++G+GK+ l+r+++ + + +
  CDO72261.1 262 GLDKQITQIRDLIEiPLTRPELfrqfglkppRGVLLHGPPGTGKTHLARAIAASTNSS 319
                 6788888888888875555555777888889********************9765544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.49
      AAA_16 122 llkrllallsrderplvlvlDdlqw 146
                  +++ +a +++ ++p ++vlD+++ 
  CDO72261.1 339 RIRDVFAEARS-RSPCIIVLDEVDA 362
                 34444444555.6789******994 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.3e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdq 62 
                 +    p+ vll+G++G+ K+ lvr++++   ++g+ fl+ k  +
  CDO72261.1 567 LGVRAPRGVLLYGPPGCSKTLLVRACAT---ESGVNFLAVKGPE 607
                 55556799******************97...4455565555554 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 1.5
      AAA_16 122 llkrllallsrderplvlvlDdlqwad 148
                 ++++++++++  + p ++++D+++ + 
  CDO72261.1 619 AVREIFSKARA-AAPSIIFFDEIDALA 644
                 56778889998.889********9664 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     7e-07   0.00034      36      71 ..     295     330 ..     286     361 .. 0.92
   2 !   17.7   0.0   4.6e-06    0.0022      32      97 ..     571     644 ..     534     648 .. 0.75
   3 ?    2.9   0.0      0.17        81      22      58 ..     688     725 ..     670     731 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7e-07
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvlek 71 
                 vll+GpPG Gkt la+ ia+  ++++ i  gP l+ 
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSSVLIVNGPELSS 330
                 9*******************************9976 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.6e-06
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrls 97 
                 a   vllyGpPG  kt l +  a+e gv++ +  gP l      e ++ +  ++++ ++    ++f dei  l+
  CDO72261.1 571 APRGVLLYGPPGCSKTLLVRACATESGVNFLAVKGPELlnkyvgESERAVREIFSKARAAapSIIFFDEIDALA 644
                 55679*******************************87332222334556666666543322688888887765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.17
      RuvB_N  22 fieaakkreealdhvllyGpPGl.Gkttlakiiakelg 58 
                 +i++a +r   ld +l +GpP   G+  + +i ++++ 
  CDO72261.1 688 TIDSALMRPGRLDRILYVGPPDYeGRVEILRIRTRKMS 725
                 588999999999*******9975467666666666665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.1e-06    0.0015       6     128 ..     295     409 ..     290     428 .. 0.75
   2 !   14.3   0.0     7e-05     0.034       7     105 ..     576     670 ..     573     673 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.1e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrdLLqi 102
                 +ll gp g+Gkt la+a+a   +    +++ +++  el    +     +  i    +  +     i+ lDE+d i+p+  +  g +v ++ V+  LL +
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTN----SSVLIVNGPELSS--AYHGETEARIRDVFAEARSRSPCIIVLDEVDAICPRreDGPGGEV-EKRVVAQLLTL 386
                 6899****************999....599999*999999..33333333344444444445555************9744444555.45688899*** PP

                 HH--EE-------EE-TT-EEEEEE- CS
       AAA_2 103 leggtltdkqgrkvdtknilfImtga 128
                 ++g +   k+g   +  ++++++t++
  CDO72261.1 387 MDGMEEAGKDG---SQGKVVVVATTN 409
                 **988777777...555566666666 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 7e-05
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG----..---------HHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpk..essgadvSregVqrdLL 100
                 ll gp g+ kt+l +a a    v    ++  +   ell      ++v + + a   + +++      i+++DEid  + +  +s +    ++gV++ LL
  CDO72261.1 576 LLYGPPGCSKTLLVRACATESGV----NFLAVKGPELLN-----KYVGESERAVREIFSKARAAapsIIFFDEIDALATSrnGSDSGGGAHDGVLTSLL 665
                 67889999999999999998887....888888888888.....55555555555555554444577*********9997666667777889******9 PP

                 HHHH- CS
       AAA_2 101 qileg 105
                 + ++g
  CDO72261.1 666 NEMDG 670
                 98887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.1e-06    0.0034       8      52 ..     295     330 ..     290     333 .. 0.88
   2 ?    3.6   0.0      0.15        73      85     130 ..     346     407 ..     331     414 .. 0.65
   3 ?    4.2   0.0       0.1        48       8      28 ..     575     595 ..     570     628 .. 0.81
   4 ?    0.7   0.0       1.2   5.9e+02      80     106 ..     621     655 ..     606     683 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.1e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpssts 52 
                 ++++G++GtGKT+l+r ++ +          +++v+ v+ p+++s
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAAST---------NSSVLIVNGPELSS 330
                 689******************9.........99999999888775 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.15
      AAA_22  85 alraravielliiDEaqhlr...s........eealeeLrsllnl......srkgvqliLvGt 130
                  +r+r+ + ++++DE++ +    +        ++++ +L +l++       + ++ ++++v t
  CDO72261.1 346 EARSRS-PCIIVLDEVDAICprrEdgpggeveKRVVAQLLTLMDGmeeagkDGSQGKVVVVAT 407
                 344444.59*********987651455666777777777777776666666566666666665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.1
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 ++++G++G+ KT+l+r  + +
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATE 595
                 689************987766 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 1.2
      AAA_22  80 ealeqalraravielliiDEaqhlr...s......e 106
                 + +   +ra+a ++++  DE++ l    +       
  CDO72261.1 621 REIFSKARAAA-PSIIFFDEIDALAtsrNgsdsggG 655
                 33444444444.59*********9775403445553 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.5e-07   0.00036       2      46 ..     295     341 ..     295     435 .. 0.78
   2 !    8.2   0.0    0.0052       2.5       2      41 ..     575     616 ..     575     646 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 7.5e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt 46 
                 vll+G+pG+GK++la+ +++ +   + +++ ++l++++ g+ + +++
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNssVLIVNGPELSSAYHGETEARIR 341
                 799***************98888988889****99999886665555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0052
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtd 41 
                 vll G+pG+ K+ l++  + + g  +  +  ++l+++++g+ 
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATESGvnFLAVKGPELLNKYVGES 616
                 7899*******************8888889999988888753 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.1e-06     0.001      49      71 ..     294     316 ..     287     362 .. 0.76
   2 ?    5.1   0.0     0.035        17      47      88 ..     572     610 ..     567     651 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.1e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +++l Gp+G+GK+hla a++ ++
  CDO72261.1 294 GVLLHGPPGTGKTHLARAIAAST 316
                 689****************8654 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.035
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavraglsvlfvrvedLve 88 
                   +++l Gp+G  K+ l  a ++e   +g++ l v+ ++L++
  CDO72261.1 572 PRGVLLYGPPGCSKTLLVRACATE---SGVNFLAVKGPELLN 610
                 56899***********98887654...344444444455555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.1     2e+03     107     129 ..      29      51 ..      11      60 .. 0.64
   2 !   15.0   0.0   2.3e-05     0.011      51      98 ..     293     338 ..     286     349 .. 0.83
   3 !    6.4   0.0    0.0091       4.4      50      98 ..     572     618 ..     566     629 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.1
                 XXXXXXX-S-EEEEEEEEEEE.. CS
       TIP49 107 igvrikeekevleGevvelevee 129
                 ++  i  + +v+ G+v+ l+ ++
  CDO72261.1  29 VNAEILKQAKVYAGDVIGLSQAD 51 
                 34556666666666666666554 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 r+vLl Gp+gtGkt la ai+ + +++v   +++g e+ s+    te+
  CDO72261.1 293 RGVLLHGPPGTGKTHLARAIAASTNSSV--LIVNGPELSSAYHGETEA 338
                 89*******************9988776..567788877777666665 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0091
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                  r+vLl Gp+g  kt l  a + e g  v f a++g e+    v  +e 
  CDO72261.1 572 PRGVLLYGPPGCSKTLLVRACATESG--VNFLAVKGPELLNKYVGESER 618
                 699*******************9987..99********99888887774 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00023      0.11      20      49 ..     293     324 ..     268     338 .. 0.78
   2 !    9.8   0.0    0.0015      0.74      19      61 ..     572     614 ..     544     623 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00023
                 EEEEEEESTTSSHHHHHHHHHHHTT--..--- CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evk 49 
                 + +lL+G+ G+GKT+l+r++a++ + +   v+
  CDO72261.1 293 RGVLLHGPPGTGKTHLARAIAASTNSSvlIVN 324
                 349******************99876554455 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0015
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYel 61 
                  + +lL+G+ G+ KT lvr+ a + gv+  +vk P   l+++Y  
  CDO72261.1 572 PRGVLLYGPPGCSKTLLVRACATESGVNflAVKGP--ELLNKYVG 614
                 3359***********************99999999..57777755 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00025      0.12       5      76 ..     295     363 ..     292     405 .. 0.81
   2 !    9.3   0.0    0.0023       1.1       5      76 ..     575     643 ..     572     652 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT l++ ++ +     +s+l +n  + + + + ++e ++ +++ e  ++    +++lDE+  +
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTN---SSVLIVNGPELSSAYHGETEaRIRDVFAEARSR-SPCIIVLDEVDAI 363
                 7899**************98888...9******99988876665553677888886444.7889*****9876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0023
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  + KT l++ ++ e+     ++l ++  +  +k   ++e+  ++i++k+++   +++f+DEi  +
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATESG---VNFLAVKGPELLNKYVGESERAVREIFSKARAAAPSIIFFDEIDAL 643
                 6899***************9998...677777776666666666666666666665556899*******876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.1e-05     0.015      20      44 ..     295     319 ..     282     357 .. 0.68
   2 ?    4.6   0.0     0.048        23      19      41 ..     574     596 ..     562     634 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-05
      AAA_11  20 tliqGPPGtgKTktivellsqllsr 44 
                 +l++GPPGtgKT+   ++ ++ +s+
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSS 319
                 79***********999999988733 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.048
      AAA_11  19 itliqGPPGtgKTktivellsql 41 
                  +l+ GPPG+ KT  + +   + 
  CDO72261.1 574 GVLLYGPPGCSKTLLVRACATES 596
                 4799*********9998887776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00022      0.11       1      49 [.     295     334 ..     295     360 .. 0.66
   2 ?    5.9   0.0     0.033        16       1      20 [.     575     594 ..     575     646 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00022
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwdgYtg 49 
                   ++l+Gp+g+GK++la+ +a++  +++   +              +  + Y+g
    CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSSVlivN------------GPELSSAYHG 334
                   689**************7776665543333............3333333443 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.033
  RNA_helicase   1 iwlyGpsgeGKStlakeLak 20 
                   ++lyGp+g+ K++l++  a+
    CDO72261.1 575 VLLYGPPGCSKTLLVRACAT 594
                   689***********998443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00015     0.072       3      27 ..     295     319 ..     293     420 .. 0.76
   2 ?    1.9   0.0      0.39   1.9e+02       3      21 ..     575     593 ..     573     598 .. 0.86
   3 ?   -0.3   0.0       1.8   8.9e+02      58     136 ..     609     686 ..     604     719 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00015
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 v+l+G++G GKT+L++ +a    ++
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSS 319
                 89****************9876665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.39
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 v+l G++G+ KT L++  a
  CDO72261.1 575 VLLYGPPGCSKTLLVRACA 593
                 899************9766 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.8
                 HCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH...........HHHHHCTTTTT--EEEEEEECCCHHHHC CS
       NACHT  58 lfsqlpepaapvsevwavllelperlLlilDglDelvtdlgq..kekqpvrtlLselirkkllpeasllltvrpralrdle 136
                 l +   e++++v+e+++   + +    + +D +D l+t  +   ++  + + +L++l+++  + ++  l+ v+  a  + +
  CDO72261.1 609 LNKYVGESERAVREIFSKARAAA-PSIIFFDEIDALATSRNGsdSGGGAHDGVLTSLLNE--MDGVQQLVGVTIVAATNRP 686
                 55556667777777444433333.334669****99997776777777888899999998..7777777666655555544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00054      0.26      30      71 ..     289     330 ..     277     349 .. 0.81
   2 ?    6.6   0.0      0.01       4.9      26      54 ..     565     593 ..     559     603 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00054
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                 lk  + vll Gp GtGKt +++ +  + +++ ++++  ++s+
  CDO72261.1 289 LKPPRGVLLHGPPGTGKTHLARAIAASTNSSVLIVNGPELSS 330
                 5566789****************9999998877777766666 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdll 54 
                  +l +++ + vll+Gp G++Kt++++ + 
  CDO72261.1 565 ARLGVRAPRGVLLYGPPGCSKTLLVRACA 593
                 5666788899**************98754 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00064      0.31      25      43 ..     295     313 ..     292     320 .. 0.90
   2 ?    6.0   0.0     0.014       6.8      25      41 ..     575     591 ..     565     595 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll GppG+GKt la++++
    CDO72261.1 295 VLLHGPPGTGKTHLARAIA 313
                   79*************9986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.014
  Mg_chelatase  25 lllvGppGsGKtmlakr 41 
                   +ll+GppG+ Kt+l ++
    CDO72261.1 575 VLLYGPPGCSKTLLVRA 591
                   89************986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00019     0.091       2      35 ..     295     333 ..     294     361 .. 0.73
   2 ?    3.5   0.0      0.16        78       2      36 ..     575     614 ..     574     643 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00019
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareil 35 
                 + + G+++tGKT l++a+aa     + +v  pE    + 
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAAStnsSVLIVngPELSSAYH 333
                 6799***************86533333446666666555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.16
      AAA_28   2 ivitGgestGKTtlleaLaar.gyp..vv..pEaareile 36 
                 + + G++++ KT l++a a + g++   v  pE   +++ 
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATEsGVNflAVkgPELLNKYVG 614
                 6799*************99766555214456666555554 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0032       1.5       2      26 ..     295     319 ..     294     326 .. 0.89
   2 ?    6.8   0.0     0.012       5.9       2      31 ..     575     604 ..     574     641 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0032
       AAA_3   2 vllegvPGlaktllvkalakaldle 26 
                 vll+g PG++kt l++a+a + + +
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSS 319
                 89*****************998765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG +ktllv+a a+  +++f  ++
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATESGVNFLAVK 604
                 7999****************9999987665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.4   1.9e+02      48      72 ..     295     319 ..     289     359 .. 0.74
   2 !   12.4   0.0   0.00024      0.11      47     113 ..     574     641 ..     554     659 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.4
       Rad17  48 LLisGPsGCgkstvvkvLskelgik 72 
                 +L+ GP+G gk+   + ++     +
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSS 319
                 68999***99998887777655544 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00024
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn.qksdfkgltekesrflsqiesfkele 113
                  +L+ GP+GC+k+  v+  + e g+++     p +l++     +  ++ ++ k     + i  f e+ 
  CDO72261.1 574 GVLLYGPPGCSKTLLVRACATESGVNFLAVKGPELLNKYVGeSERAVREIFSKARAAAPSIIFFDEID 641
                 46899*******************99998888877755433256666666766666677777777764 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-05    0.0087       1      37 [.     295     349 ..     295     409 .. 0.80
   2 ?   -1.9   0.0       9.5   4.6e+03       1      21 [.     575     595 ..     575     628 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..................gvnlrdvakengl 37 
                 +ll G+pG+GKt la++++ ++++                    ++rdv++e ++
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSsvlivngpelssayhgetEARIRDVFAEARS 349
                 7899**************9998666787777777777777777777777766655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 9.5
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 +ll G+pG+ Kt l ++ + +
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATE 595
                 7899*****999888876554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0032       1.5      36      57 ..     295     316 ..     265     328 .. 0.88
   2 ?    1.2   0.0       0.5   2.4e+02     127     175 ..     337     386 ..     326     393 .. 0.80
   3 ?    3.6   0.0     0.091        44      36      51 ..     575     590 ..     568     632 .. 0.86
   4 ?   -2.1   0.0       5.1   2.5e+03     128     184 ..     618     680 ..     599     682 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0032
      AAA_25  36 allaGapgtGKttlaldlalav 57 
                 +ll G+pgtGKt la  +a+++
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAAST 316
                 689************9999875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.5
      AAA_25 127 tadvdaleaaieevegvrlvviDplsralggdensnsdv..galvealeri 175
                 +a ++++ a++++   +  +v+D ++++++  e+    +  +++v++l  +
  CDO72261.1 337 EARIRDVFAEARS-RSPCIIVLDEVDAICPRREDGPGGEveKRVVAQLLTL 386
                 5678889999999.67**************988887663379999988765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.091
      AAA_25  36 allaGapgtGKttlal 51 
                 +ll+G+pg+ Kt l+ 
  CDO72261.1 575 VLLYGPPGCSKTLLVR 590
                 69**********9875 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 5.1
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsd......v.galvealeriarrtgaavl 184
                 ++v+++  ++++ + +  + +D ++++    + s+s       v ++l++ ++ +++  g++++
  CDO72261.1 618 RAVREIFSKARA-AAPSIIFFDEIDALATSRNGSDSGggahdgVlTSLLNEMDGVQQLVGVTIV 680
                 567778888888.558899988888866663333333355666468888888888888888876 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0014      0.69      37      59 ..     295     317 ..     290     323 .. 0.88
   2 ?    1.3   0.0      0.51   2.5e+02     130     198 ..     400     465 ..     395     479 .. 0.76
   3 ?    0.3   0.0       1.1   5.4e+02      37      58 ..     575     596 ..     568     646 .. 0.88
   4 ?   -1.4   0.0       3.6   1.8e+03     162     184 ..     704     726 ..     659     739 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0014
                 EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevl 59 
                 ++++g+ G GktHL +ai+  + 
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTN 317
                 79****************98776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.51
                 T-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHHHHH- CS
    Bac_DnaA 130 gkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefiaerv 198
                 gk vv+++   P++++    r   rf++   ++i  pd e r  il+  +++   ev+ + l+ ia + 
  CDO72261.1 400 GKVVVVATTNRPNAIDPAL-RRPGRFDRE--IEIGIPDAEARYHILEVLLSKTPHEVTGDDLRSIAAKA 465
                 5667777777777765543.335677775..566679**************999999999999999876 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.1
                 EEEE-SSSSSHHHHHHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignev 58 
                 +++yg+ G  kt L++a + e 
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATES 596
                 79**************998765 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 3.6
                 E-----HHHHHHHHHHHHHHTT- CS
    Bac_DnaA 162 dieppdletrlailkkkieaekl 184
                  + ppd+e r++il+ + ++ ++
  CDO72261.1 704 YVGPPDYEGRVEILRIRTRKMSV 726
                 5789**********977665554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00014     0.066      15      53 ..     291     327 ..     282     342 .. 0.85
   2 ?    0.5   0.0      0.66   3.2e+02      15      47 ..     571     601 ..     564     609 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvvrldpDd 53 
                  P  +ll G pG GK++la+++++++  +++v+ +++ +
  CDO72261.1 291 PPRGVLLHGPPGTGKTHLARAIAAST--NSSVLIVNGPE 327
                 57889********************8..88888887655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.66
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvv 47 
                  P  +ll G pG+ K+ l ++ ++e   + n++
  CDO72261.1 571 APRGVLLYGPPGCSKTLLVRACATES--GVNFL 601
                 68899****************99997..55555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00043      0.21      19      43 ..     293     317 ..     282     331 .. 0.81
   2 ?   -0.2   0.0       1.4     7e+02      21      39 ..     575     593 ..     562     597 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00043
      AAA_30  19 rvavltGpAGtGKttalkalreawe 43 
                 r ++l+Gp+GtGKt++ +a+++  +
  CDO72261.1 293 RGVLLHGPPGTGKTHLARAIAASTN 317
                 56899*************9987655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
      AAA_30  21 avltGpAGtGKttalkalr 39 
                 ++l Gp+G  Kt +++a +
  CDO72261.1 575 VLLYGPPGCSKTLLVRACA 593
                 6899**********99875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0017      0.83       2      70 ..     296     359 ..     295     363 .. 0.64
   2 ?    2.9   0.0      0.15        75       5      73 ..     579     642 ..     575     646 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvdsflmalvkstkgkililDE 70 
                      + hG pG GK++l r ++ +      n++ + +++       + +  + r  d f +a+++s    i++lDE
       CDO72261.1 296 LLHGPPGTGKTHLARAIAAST-----NSS-VLIVNGPElssAYHGETEARIRDVFAEARSRS--PCIIVLDE 359
                      68****************983.....222.22222211344555666666666677777666..44788887 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.15
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEyll 73 
                      G pGc K+ l+r  + +s +++ +++   ell++ + ++++  vr + s   a+ +s    i+++DE+ +
       CDO72261.1 579 GPPGCSKTLLVRACATESgVNFLAVKG-PELLNKYVGESER-AVREIFSKARAAAPS----IIFFDEIDA 642
                      78*************999988888888.8999999855554.466666666666665....9****9855 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0076       3.7      52      82 ..     291     321 ..     264     362 .. 0.88
   2 ?   -2.2   0.0       3.8   1.9e+03     137     153 ..     396     412 ..     371     420 .. 0.69
   3 ?    4.3   0.0     0.041        20      54      82 ..     573     601 ..     561     640 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0076
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegL 82 
                 p + vLL G  GtGK  l +a+ ++++++ L
  CDO72261.1 291 PPRGVLLHGPPGTGKTHLARAIAASTNSSVL 321
                 56789*****************999888765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.8
      DUF815 137 eakpenvliyaTsNrRh 153
                 + ++ +v++ aT+Nr +
  CDO72261.1 396 DGSQGKVVVVATTNRPN 412
                 3456799*******976 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.041
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegL 82 
                 + vLL+G  G+ K  lv+a+ +e   + L
  CDO72261.1 573 RGVLLYGPPGCSKTLLVRACATESGVNFL 601
                 569*****************998766655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0014      0.67      24      46 ..     294     316 ..     284     327 .. 0.85
   2 ?    0.8   0.0      0.71   3.5e+02      24      46 ..     574     596 ..     562     647 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
                      -EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  24 svlitGesGtGKellaraiheas 46 
                       vl++G  GtGK+ larai +++
       CDO72261.1 294 GVLLHGPPGTGKTHLARAIAAST 316
                      69****************98755 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.71
                      -EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  24 svlitGesGtGKellaraiheas 46 
                       vl+ G  G+ K+ll ra+ ++s
       CDO72261.1 574 GVLLYGPPGCSKTLLVRACATES 596
                      57778888888877777765544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00091      0.44       6      67 ..     287     346 ..     285     396 .. 0.78
   2 ?    1.1   0.0       1.1   5.2e+02       8      34 ..     569     595 ..     565     599 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00091
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe 67 
                 + lk+ + v + G+ G+GK+ L++++a  ++     + ++g +l++  + +++++i+ ++ e
  CDO72261.1 287 FGLKPPRGVLLHGPPGTGKTHLARAIAASTNS--SVLIVNGPELSSAYHGETEARIRDVFAE 346
                 7788888999*****************98763..3333456666666666666666666555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.1
                 EETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagl 34 
                 +++ + v + G+ G+ K+ L+++ a +
  CDO72261.1 569 VRAPRGVLLYGPPGCSKTLLVRACATE 595
                 556667899************997765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00069      0.33       5      29 ..     295     323 ..     292     370 .. 0.82
   2 ?    0.1   0.0       1.2   5.6e+02       5      22 ..     575     592 ..     571     644 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00069
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfi 29 
                 +l+ Gp+g+GKT+la+ +      ++l++
  CDO72261.1 295 VLLHGPPGTGKTHLARAIaastNSSVLIV 323
                 799************99877666666665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.2
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g  KT l++  
  CDO72261.1 575 VLLYGPPGCSKTLLVRAC 592
                 89**********998765 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.13      26      69 ..     295     337 ..     286     343 .. 0.88
   2 ?   -2.4   0.0       4.3   2.1e+03      26      47 ..     575     593 ..     571     611 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
                 EEEE-SSSSSTTTTHHHHHHHGGGS--EEEEES-GGGGTSS-S- CS
        DAP3  26 lvltGekgsGKSvlLlqalayAlekgwvvlhvpeaedlvngtte 69 
                 ++l+G +g+GK+ +L+ a+a  +++ +++++ pe ++  +g+te
  CDO72261.1 295 VLLHGPPGTGKT-HLARAIAASTNSSVLIVNGPELSSAYHGETE 337
                 789********7.9*****************9999988888887 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.3
                 EEEE-SSSSSTTTTHHHHHHHG CS
        DAP3  26 lvltGekgsGKSvlLlqalayA 47 
                 ++l+G +g+ K++l+    a A
  CDO72261.1 575 VLLYGPPGCSKTLLVR---ACA 593
                 689*********9863...444 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0091       4.4      14      37 ..     287     310 ..     259     320 .. 0.80
   2 ?    3.9   0.0      0.06        29      15      37 ..     568     590 ..     560     600 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0091
      ATPase  14 gGipegrvvlitGepGtGKtifal 37 
                  G+   r vl+ G pGtGKt +a 
  CDO72261.1 287 FGLKPPRGVLLHGPPGTGKTHLAR 310
                 68888899************9985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.06
      ATPase  15 GipegrvvlitGepGtGKtifal 37 
                 G+   r vl++G pG+ Kt+++ 
  CDO72261.1 568 GVRAPRGVLLYGPPGCSKTLLVR 590
                 66777889************976 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00082       0.4      22      43 ..     295     316 ..     289     322 .. 0.87
   2 ?   -0.2   0.0       1.2   5.8e+02      22      42 ..     575     595 ..     569     600 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00082
                 EEEE--TTSSTTHHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalavea 43 
                 v   Gp GtGKt+la a+a++ 
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAAST 316
                 5678*************99875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.2
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v   Gp G+ Kt+l  a+a e
  CDO72261.1 575 VLLYGPPGCSKTLLVRACATE 595
                 6789**********9999875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0     0.002      0.95      12      34 ..     294     316 ..     289     348 .. 0.85
   2 ?    1.0   0.0      0.98   4.7e+02      12      31 ..     574     593 ..     566     629 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.002
      AAA_19  12 vllvtaGpGtGKTrvlkhivall 34 
                  +l+ ++pGtGKT++ ++i a  
  CDO72261.1 294 GVLLHGPPGTGKTHLARAIAAST 316
                 5899**********999988765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.98
      AAA_19  12 vllvtaGpGtGKTrvlkhiv 31 
                  +l+ ++pG+ KT ++++  
  CDO72261.1 574 GVLLYGPPGCSKTLLVRACA 593
                 5899*********9998764 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0018      0.88      59      79 ..     289     309 ..     255     317 .. 0.84
   2 ?   -0.1   0.0      0.68   3.3e+02      59      79 ..     569     589 ..     552     594 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0018
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtylm 79 
                   +p+rg+ l+G+ G GKt+l 
   CDO72261.1 289 LKPPRGVLLHGPPGTGKTHLA 309
                  579****************95 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.68
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtylm 79 
                  v+++rg+ l+G+ G  Kt l+
   CDO72261.1 569 VRAPRGVLLYGPPGCSKTLLV 589
                  679***************997 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00059      0.29     117     138 ..     295     316 ..     286     324 .. 0.88
   2 ?   -3.3   0.0       7.9   3.8e+03     117     135 ..     575     593 ..     574     596 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00059
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v+++Gp+ tGkt la+aIa  +
  CDO72261.1 295 VLLHGPPGTGKTHLARAIAAST 316
                 899***************9765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.9
   Parvo_NS1 117 vwfyGpantGktnlaeaIa 135
                 v++yGp+ + kt l +a a
  CDO72261.1 575 VLLYGPPGCSKTLLVRACA 593
                 799*********9998865 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0069       3.3      24      56 ..     295     327 ..     290     365 .. 0.78
   2 ?    1.7   0.0      0.53   2.6e+02      23      81 ..     574     643 ..     566     648 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0069
                      EEEEEETT--HHHHHHCC--TTS-EE--SSTTH CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleifvver 56 
                      v+l G++G+gk+  Ar+++ +    + i++  +
       CDO72261.1 295 VLLHGPPGTGKTHLARAIAASTNSSVLIVNGPE 327
                      9******************99988888876555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.53
                      -EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H........HHHHHH...TTTSEEEEEE-TT- CS
  Sigma54_activ_2  23 pvfltGekGsgkelvArlLhknsgpwleifvverlaklp........ldlleq...akggtLylkdiadl 81 
                       v+l G++G+ k+l  r+ + +sg +   ++  +l +           +++ +   a + ++++ +i+ l
       CDO72261.1 574 GVLLYGPPGCSKTLLVRACATESGVNFLAVKGPELLNKYvgeseravREIFSKaraAAPSIIFFDEIDAL 643
                      699**********999988887776554433333332112333333355555533346666777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 5298.95
//
Query:       CDO72262.1  [L=268]
Description: hypothetical protein BN946_scf184970.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-43  148.9   0.0    2.2e-43  148.5   0.0    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.2e-35  122.7   0.0      3e-35  121.5   0.0    1.6  1  adh_short     short chain dehydrogenase
      4e-07   30.1   0.0    8.6e-07   29.0   0.0    1.5  2  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   3.7e-47   2.2e-43       3     232 ..      23     253 ..      20     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 3.7e-47
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +gIG+ iA  + ++G +v ++ ++ ++ +++++el+++++   + +++D ++ e+v++lv+e+  + + l++lvnnag +         ++ e++ 
    CDO72262.1  23 SRGIGKMIATGFVKNGSKVYISSRSAKDcEATAQELTAAGPGVcIpIPADMQKLEEVDRLVKELSVREKALHVLVNNAGATWG-------ATLEDYP 112
                   59**************************99999***9999877569************************************9.......899**** PP

                   HHHHHHTHHHHHHHHHHHH.HCTSC.....CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  97 raldvnlyslfllakaalp.lmkeg.....gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   r++    + l ll +aa++  m        ++i+n+ s+ + +v  + + ay+a+Ka+l++l+r lA  lgp+gi+ N+ + gp + +++++    +
    CDO72262.1 113 RVFTLTQKCLPLLREAAEQgGMDGDvyhdpARIINVGSIEGLIVPMHETyAYSASKAGLHQLSRHLAGRLGPEGITSNTLACGPFESKMMAQTL--K 207
                   *******************95554456677*********99998555556***************************************88876..8 PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   el + ++a++plgr+gtpe+va a++fLas + +++tG+t+ vDgG
    CDO72262.1 208 ELGDSIRAMIPLGRIGTPEDVAGACIFLASRAGAWVTGATIQVDGG 253
                   *********************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0     5e-39     3e-35       1     191 [.      15     206 ..      15     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 5e-39
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 kvvlvtG+s+GIG+ ia  ++k+G kv++ +rs++++e++a+el ++     ++i++D+++ eev++lv++   + + l+vLvnNAG t+       + 
  CDO72262.1  15 KVVLVTGGSRGIGKMIATGFVKNGSKVYISSRSAKDCEATAQELTAAgPGVCIPIPADMQKLEEVDRLVKELSVREKALHVLVNNAGATW-----GATL 108
                 89*********************************************77789************************************65.....5567 PP

                 HHHHHHHHHHTHHHHHHHHHHHHH.HH...HCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpa.ml...kqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 e++ rv+ +  + + ll +a+ +  m+    +  +rI+nv+S+ g  vp+ ++ aYsAsKa++++l+r la  l p+gi+ n++a+G+++++m++++ 
  CDO72262.1 109 EDYPRVFTLTQKCLPLLREAAEQGgMDgdvYHDPARIINVGSIEGlIVPMHETYAYSASKAGLHQLSRHLAGRLGPEGITSNTLACGPFESKMMAQTL 206
                 8999*****999887777766665787888899************779*********************************************98765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.4e-10   8.6e-07       2      98 ..      16     109 ..      15     115 .. 0.87
   2 ?   -3.5   0.0       1.4   8.6e+03     143     162 ..     158     177 ..     145     191 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.4e-10
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE.----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevev.vaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 ++l+tGG  g+G+ +a+  +++g  ++ + sRs    +d +a+ +el+a g  v + ++aD  + ++v +l++e++ +e++++  ++ Ag++  ++le
  CDO72262.1  16 VVLVTGGSRGIGKMIATGFVKNGS-KVYISSRS---AKDCEATAQELTAAGPGVCIpIPADMQKLEEVDRLVKELSVREKALHVLVNNAGATWGATLE 109
                 579*******************96.58999999...456677899999998876543899*****************************987666665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.4
                 -TT-HHHHHHHHHHHHHHHH CS
          KR 143 sagqanYaaaNaflDalaey 162
                 + +  +Y+a  a l++l ++
  CDO72262.1 158 MHETYAYSASKAGLHQLSRH 177
                 34455677776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1810.90
//
Query:       CDO72263.1  [L=351]
Description: hypothetical protein BN946_scf184970.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-132  440.5   0.0   2.1e-132  440.3   0.0    1.0  1  Coprogen_oxidas  Coproporphyrinogen III oxidase
  ------ inclusion threshold ------
        0.1   11.3   0.0       0.13   10.9   0.0    1.1  1  T6SS_VasE        Bacterial Type VI secretion, VC_A0110, EvfL,


Domain annotation for each model (and alignments):
>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.3   0.0  2.4e-136  2.1e-132       1     296 []      12     351 .]      12     351 .] 0.93

  Alignments for each domain:
  == domain 1  score: 440.3 bits;  conditional E-value: 2.4e-136
  Coprogen_oxidas   1 kveellkelqdeivkaleeldgka.kfkedewereeggggisrvledgk..........vfekagvnvsvvegklpesavkqmraekk...eel 80 
                      +vee++++lqd+iv+ale+ld++a +fk+d+w r++gg+g s+v++             v+ekagvn+svv+g lp+ a+kqmra+++   + +
       CDO72263.1  12 RVEEYISKLQDDIVSALEKLDPNApTFKRDSWLRAQGGRGLSCVFAVPVpppgvaqqetVLEKAGVNISVVHGMLPPPAIKQMRADHSsipDIQ 105
                      689******************99889*******************97666777777777****************************9997778 PP

  Coprogen_oxidas  81 eeleffaagvslvihprnPlvPtvhlnyryfeaee.............kkkawWFgGgaDLtPsylfeedavhfHktlkeacdkhdkelypkfK 161
                      ++++ffaag+slvihprnP++Ptvh+nyryfe++e             k+ awWFgGg DLtPsyl+eeda+hfH+tlk+acd+h++++yp+fK
       CDO72263.1 106 SSVPFFAAGISLVIHPRNPHAPTVHANYRYFEITEtpteeeqaagksgKVIAWWFGGGGDLTPSYLYEEDAIHFHRTLKAACDPHGAAVYPTFK 199
                      89*******************************999998888777665589******************************************* PP

  Coprogen_oxidas 162 kwcDeyFyikhRkeaRGvGGiffddlk.........es.....aeelfafvksvgeaflpaYlpivekrkdtpyteeerewqllrrgryveFnL 241
                      kwcDeyF+i+hR+eaRG+GGiffddl          ++     ae++fafvk++g+af+p+Y+pi+e+r++tp +++er+wqllrrgryveFnL
       CDO72263.1 200 KWCDEYFHITHRGEARGIGGIFFDDLCedphrrfapDDsrpktAEDIFAFVKAAGDAFVPSYVPILERRMRTPSDDHERRWQLLRRGRYVEFNL 293
                      ***************************6666555550056666*************************************************** PP

  Coprogen_oxidas 242 vyDrGtkfGLqte.grvesiLmslPptarweyelepe..egseeaellevlkkpreWv 296
                      vyDrGtkfGL+t+ +r+esiLmslP+tarwey++e    ++s+e +l+evlk+preWv
       CDO72263.1 294 VYDRGTKFGLMTPgARIESILMSLPETARWEYMSELGtdPESREGKLVEVLKNPREWV 351
                      *************9*******************99765599****************8 PP

>> T6SS_VasE  Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05      0.13     359     404 ..     103     148 ..      70     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.5e-05
   T6SS_VasE 359 kirelvnsalpGiplrplpvaPrqipyragyvYFeLdkkgelwkql 404
                 +i++ v     Gi+l   p+ P++  ++a+y YFe+ ++    +q 
  CDO72263.1 103 DIQSSVPFFAAGISLVIHPRNPHAPTVHANYRYFEITETPTEEEQA 148
                 56666666778*************************9876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2762.03
//
Query:       CDO72264.1  [L=366]
Description: hypothetical protein BN946_scf184970.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.087   12.9   0.6       0.21   11.7   0.6    1.6  1  Antimicrobial_5  Bee antimicrobial peptide


Domain annotation for each model (and alignments):
>> Antimicrobial_5  Bee antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   1.2e-05      0.21       5      18 ..     229     242 ..     227     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
  Antimicrobial_5   5 kpPpggrkPFPTFP 18 
                      + ++++++P PTFP
       CDO72264.1 229 QQGAQRWRPRPTFP 242
                      5689*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2915.67
//
Query:       CDO72265.1  [L=300]
Description: hypothetical protein BN946_scf184970.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-08   35.2   1.7    2.4e-08   34.2   1.7    1.6  1  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.021   14.4   0.2       0.04   13.4   0.1    1.7  2  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   1.7   2.6e-12   2.4e-08       4     159 ..      45     230 ..      43     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.6e-12
                  CSSEEEEEE..ETTCEEEES--SCHHHHHHHH...................HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHH CS
  Lactamase_B   4 dpvnsylie..gdggviLiDtGtsteaaraal...................elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeap 80 
                  +p+ ++l++    g+ +++D G+    +                        l + g++p  v++vi++HlH+DH+G+   ++ at +  g+ ++ ++
   CDO72265.1  45 CPSLAFLLRhsATGDRVVFDLGIRRNLDTHPPavqqlnagrtvvipqtvaeSLERGGVDPATVKTVIVSHLHFDHVGDTSLFPAATFILGGEARDFLA 142
                  578889999877899999999999999999999999999999999999999**********************************9998888887777 PP

                  CCHCHHHHHHHHHCCHH..........TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCC CS
  Lactamase_B  81 alfmeeaddaasrkgll..........lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgr 159
                   + +++  +++   ++           +++ ++++p     ++ g++ +     + + pgh ++ ++  + g  + ++GD+ +   +++
   CDO72265.1 143 LHGYPAD-PESLCLQSAvpldrtvfldKEFTHIIGPFSRAYDYFGDGSMYIIDAPGHLPGHVNVLARTNATGSWIYLAGDTAHDVRILT 230
                  7777766.444444444577777555444444444444444444444444444444444444444444445555555566655555555 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.5e-06      0.04      27      48 ..     103     124 ..      65     173 .. 0.85
   2 ?   -3.0   0.0      0.47   4.2e+03     137     145 ..     216     224 ..     203     264 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-06
                    -..SEEEEE-SS--HHHHGGGG CS
  Lactamase_B_2  27 elppidaVllthaHyDHlagll 48 
                    +++ ++ V+++h H+DH+ +  
     CDO72265.1 103 DPATVKTVIVSHLHFDHVGDTS 124
                    567899************8865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.47
                    EEEESS-S- CS
  Lactamase_B_2 137 vyyigDtgy 145
                    +y +gDt++
     CDO72265.1 216 IYLAGDTAH 224
                    666666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2141.04
//
Query:       CDO72266.1  [L=413]
Description: hypothetical protein BN946_scf184970.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-14   52.4   0.1      1e-13   51.4   0.1    1.5  1  ArfGap    Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   5.7e-18     1e-13      42     113 ..      28      98 ..      25     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 5.7e-18
                 HHCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGHHHHHHHHHHHHTCHTT CS
      ArfGap  42 vHrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekrskssskekreefirakYeekkf 113
                 vHr++gvhis+vrs++ld+w+ ++l+++k +gN+ a e++ ++  +   + +s++k+k+++ +++ Y+e+  
  CDO72266.1  28 VHRNMGVHISFVRSTNLDSWQLNQLRTMKVGGNASATEFFTKHGGAALLS-DSDTKKKYSSRVAELYKEELA 98 
                 9*******************************************998888.9999************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2909.78
//
Query:       CDO72267.1  [L=262]
Description: Glycoside Hydrolase Family 12 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-38  132.2  13.5    6.2e-38  130.9  13.5    1.6  1  Glyco_hydro_12  Glycosyl hydrolase family 12
  ------ inclusion threshold ------
       0.39   10.1   2.5        9.1    5.7   0.1    2.2  2  DUF5560         Family of unknown function (DUF5560)


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9  13.5   6.9e-42   6.2e-38       2     214 .]      32     261 ..      31     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 6.9e-42
                     EEEEEE--TTEEEEEEEEEEEE-SSEEEEEEEEEEEEESSGB--EEEEE-BGGGTB--TT----EEGGGEEEEEEEEEEEEE..-TT--EEEEEE CS
  Glyco_hydro_12   2 pysvennlWgskegsgsvavkvdgekitssgasahtswkekgypevygGeksvksysnsgvalpvkvssvssiptevsfsid..dtnvkanvayd 94 
                      y++ +nlWg+++g gs++ +        +  s+ t w++++ p+  + + +v+ +s++gv+l    s +ss+pt  +++++     ++a+v+yd
      CDO72267.1  32 AYTLCQNLWGESAGVGSQSSTL--LSANGNSVSWRTVWNWQNNPNNVKSYANVEHNSAKGVQL----SRLSSAPTAWQWEYEskSNPIRADVSYD 120
                     69999**************776..466777789***************************999....999**********9963455******** PP

                     EEEESSTT-S..--TT-EEEEEEEE.EES---SSEEEE.EEEETTEEEEEEE.EESSSEEEEEEESS.--EEEEEEHHHHHHHHH.......... CS
  Glyco_hydro_12  95 lflaaeknqv..tsigdvElmiWlarygniqPiGekie.tavvgGetWelwlGaeaeqdvlsFvaks.pikgysfDvkdFldalt.......... 175
                     ++l ++++    +s   +E+miWl   g iqP+G++i+  +++ G+tW+lw G +a+++vlsFv+++  i+++  D+k F+              
      CDO72267.1 121 IWLGNQPTGNpaSSASSYEIMIWLSGQGGIQPVGSQIQsGISIAGHTWNLWRGPNANWQVLSFVSANgDITNFNADLKSFFGVFLafqsqttnsd 215
                     ***87765444288899********************9789***********************865279***********9866788999**** PP

                     .........-SS---GGGSEE-EEEEE--B..--TT-EEEEEEEEEEE CS
  Glyco_hydro_12 176 .........sargldaedlylislqiGtEpftgspetlkvenfsasve 214
                              +++g+   ++y+ ++q GtEpftgs++ l  +nf + ++
      CDO72267.1 216 dnggadylvQNQGVS-TSQYVQAIQTGTEPFTGSAS-LLTQNFNVALN 261
                     *****9998888876.579****************9.88899988765 PP

>> DUF5560  Family of unknown function (DUF5560)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.5    0.0025        22      98     147 ..      19      70 ..      13      92 .. 0.77
   2 ?    5.7   0.1     0.001       9.1      91     125 ..     118     152 ..      86     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0025
     DUF5560  98 stptgpppcspggnhplca.lsgrgggrcsips.lsssstfslfssgcwnpr 147
                  t +g   c p g + lc  l g   g  s  s l s+   s+    +wn +
  CDO72267.1  19 QTISGQYDCMPAGAYTLCQnLWGESAGVGSQSStLLSANGNSVSWRTVWNWQ 70 
                 56789999**********5488998888877653566667777777788765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.001
     DUF5560  91 qhtpplpstptgpppcspggnhplcalsgrgggrc 125
                  +   l   ptg p  s      +  lsg+gg + 
  CDO72267.1 118 SYDIWLGNQPTGNPASSASSYEIMIWLSGQGGIQP 152
                 455568899**********************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2026.10
//
Query:       CDO72268.1  [L=365]
Description: Glycoside Hydrolase Family 12 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-32  112.7  11.5    3.2e-32  112.2  11.5    1.1  1  Glyco_hydro_12  Glycosyl hydrolase family 12
  ------ inclusion threshold ------
       0.14   11.2   2.2       0.19   10.7   2.2    1.2  1  DEC-1_N         DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2  11.5   3.6e-36   3.2e-32       2     213 ..      40     247 ..      39     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 3.6e-36
                     EEEEEE--TTEEEEEEEEEEEE-SSEEEEEEEEEEEEESSGB--EEEEE-BGGGTB--TT----EEGGGEEEEEEEEEEEEE..-TT--EEEEEE CS
  Glyco_hydro_12   2 pysvennlWgskegsgsvavkvdgekitssgasahtswkekgypevygGeksvksysnsgvalpvkvssvssiptevsfsid..dtnvkanvayd 94 
                      y++ +nlWg++ g gs++ +      + +  s+ t+ +++         ++vksy+n   +  + ++++ s+pt+ ++ ++   + + a+v+yd
      CDO72268.1  40 AYTLCQNLWGASTGVGSQSTTL--LSASGNSVSWSTTYQWSQ------SPDNVKSYANVYHNTAKGMQDIVSAPTTWQWYYQsaSSDLAADVSYD 126
                     69999**************777..477788889********5......555666666666666666789**********99866788******** PP

                     EEEESSTT-S..--TT-EEEEEEEE.EES---SSEEEE.EEEETTEEEEEEE.EESSSEEEEEEE.SS--EEEEEEHHHHHHHHH-SS---GGGS CS
  Glyco_hydro_12  95 lflaaeknqv..tsigdvElmiWlarygniqPiGekie.tavvgGetWelwlGaeaeqdvlsFva.kspikgysfDvkdFldaltsargldaedl 185
                     +++   ++    +    +E+miWl   g ++ iG+ ++  +++gG tW+l  G + ++dv+sF++ +  i+ +  D+++F+++l +++g++ + +
      CDO72268.1 127 IWTGVPQSGDpaSAASSYEIMIWLSDRGGVGGIGNVVAqNLKLGGYTWTLKHGPNSNWDVFSFITaEGDITDFNADLNNFFQYLIEQQGVA-KTQ 220
                     ***87665433277889*******************98789**********************8615689***************999986.689 PP

                     EE-EEEEE--B..--TT-EEEEEEEEEE CS
  Glyco_hydro_12 186 ylislqiGtEpftgspetlkvenfsasv 213
                     yl ++q GtEpftgs++ l    ++++v
      CDO72268.1 221 YLQAIQSGTEPFTGSGN-LVTTTYTVDV 247
                     ****************9.8888888887 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   2.1e-05      0.19      73     159 ..     194     294 ..     177     314 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.1e-05
     DEC-1_N  73 Gqlinlqalpqdl.llppmdlgpqvGaalqsl....lplqsldgllGaa........apapalaaapppapapvp.ddpapapaapqaaafaffnpanl 157
                 G + +++a  +++ +   ++ g    + lq +     p+++  +l+ ++        a  p  +a+p p+p+p+p  +p+p p+  + +  +    + l
  CDO72268.1 194 GDITDFNADLNNFfQYLIEQQGVAKTQYLQAIqsgtEPFTGSGNLVTTTytvdvstsADQPSSSASPSPSPSPSPsPSPSPSPSQTSRGVNSGISTSAL 292
                 555555555555543333444444444444444445455555555554445555555999*************99445788887776665555555555 PP

     DEC-1_N 158 da 159
                  +
  CDO72268.1 293 SS 294
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2676.44
//
Query:       CDO72269.1  [L=292]
Description: hypothetical protein BN946_scf184970.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-14   52.3   0.0      8e-14   51.6   0.0    1.3  1  DDE_3          DDE superfamily endonuclease
    4.7e-07   30.0   0.5    5.5e-05   23.3   0.1    2.8  2  HTH_Tnp_Tc3_2  Transposase
    0.00048   19.6   0.0     0.0011   18.4   0.0    1.6  1  Sigma70_r4     Sigma-70, region 4
    0.00085   19.1   0.1     0.0062   16.3   0.0    2.4  2  HTH_23         Homeodomain-like domain
     0.0012   18.9   0.0     0.0041   17.2   0.0    2.0  2  HTH_28         Helix-turn-helix domain
     0.0018   18.0   0.2     0.0054   16.5   0.0    2.0  2  HTH_38         Helix-turn-helix domain
     0.0094   15.9   0.0      0.045   13.7   0.0    2.2  2  HTH_11         HTH domain
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.047   13.3   0.0    1.6  1  GntR           Bacterial regulatory proteins, gntR family
      0.025   14.4   0.2      0.081   12.7   0.0    1.9  2  HTH_IclR       IclR helix-turn-helix domain
      0.079   13.2   0.0       0.14   12.4   0.0    1.4  1  UPF0122        Putative helix-turn-helix protein, YlxM / p13 
       0.13   12.3   0.0       0.28   11.2   0.0    1.6  1  HTH_Crp_2      Crp-like helix-turn-helix domain
       0.16   12.1   0.0       0.32   11.1   0.0    1.4  1  HTH_AraC       Bacterial regulatory helix-turn-helix proteins


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   5.4e-17     8e-14       2     135 ..     148     291 ..     147     292 .] 0.75

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 5.4e-17
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrg.......rvnligaldekgglafvtfeetlnaedfae.....flerlletalqakkivlilDna 88 
                 vvf  Es+f+l ++ +r w ++ k e  ++++          +v++ g ++ +g  ++ ++ +t++a+  ++     +l +l +++l++++i++  Dn 
  CDO72269.1 148 VVFSNESQFDLFPTSGRQWCPRRKGEAHYPRNTIPcvpakggKVTVWGCITSRGVGHLHQIIGTMDAKMYRDileesLLGTLYDHHLSPRTIIFQHDND 246
                 688889999999999998876544433333332223333344************66666666666666665500004555677888888899999**** PP

       DDE_3  89 siHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk 135
                 + Hks+ ++e++e+  +++ +l +P+ SP++N+iE+vw ++k++l +
  CDO72269.1 247 PKHKSHLVQEWLEK--QNILVLPWPSSSPDFNIIENVWAHIKKRLER 291
                 **************..***************************9875 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.041        61      28      42 ..      33      47 ..      24      78 .. 0.84
   2 !   23.3   0.1   3.7e-08   5.5e-05      29      66 ..      96     133 ..      86     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.041
  HTH_Tnp_Tc3_2 28 ksvsreTirrrLrka 42
                   +++ r+T+r++L++ 
     CDO72269.1 33 VHCDRSTVRQVLQQV 47
                   47999*******975 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.7e-08
  HTH_Tnp_Tc3_2  29 svsreTirrrLrkaglkkrkprkkplLskknrkaRLeF 66 
                    + s +T+ rrL ++gl +++ ++kplL+k n ++R  +
     CDO72269.1  96 HASTRTVCRRLAEIGLPGWVRQRKPLLKKSNLAQRKVW 133
                    56899***************************999665 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.5e-07    0.0011       7      41 ..       7      44 ..       3      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.5e-07
                HHHHHHHHHHH...TTT--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4  7 ererevlelrf...geglTleEIgerlgiSrerVrqie 41
                ++ +++l l+    ge+l+l+EI+ + +  r++Vrq +
  CDO72269.1  7 AKRQKILDLYHpvnGEPLSLSEIAGHVHCDRSTVRQVL 44
                56689999999*************************86 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.1e-06    0.0062       3      40 ..       5      46 ..       3      53 .. 0.85
   2 ?   -0.9   0.0       1.1   1.6e+03      30      37 ..      98     105 ..      77     111 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.1e-06
      HTH_23  3 sereRlrilllla....eGlsvreIAreLgvsrrTvyrwlkr 40
                s  +R++il l+     e ls +eIA + ++ r+Tv+++l+ 
  CDO72269.1  5 STAKRQKILDLYHpvngEPLSLSEIAGHVHCDRSTVRQVLQQ 46
                66789999999999766689*******************987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
      HTH_23  30 srrTvyrw 37 
                 s rTv+r 
  CDO72269.1  98 STRTVCRR 105
                 44555543 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.7e-06    0.0041       1      51 [.       8      63 ..       8      64 .. 0.84
   2 ?   -2.9   0.0       5.1   7.7e+03      22      29 ..     232     239 ..     231     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
      HTH_28  1 qRleiiklla..aGh..svreaArelgisrrtvyrWikryeegGiagLvprr.rrp 51
                +R +i+ l+   +G+  s +e+A +++++r+tv++ +++  + G      r+ +rp
  CDO72269.1  8 KRQKILDLYHpvNGEplSLSEIAGHVHCDRSTVRQVLQQVSSSGQLNYDIRPkGRP 63
                5899999999999**9**********************988888766666652566 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.1
      HTH_28  22 lgisrrtv 29 
                 +++s+rt+
  CDO72269.1 232 HHLSPRTI 239
                 799***98 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-06    0.0054       3      41 ..       2      44 ..       1      46 [. 0.85
   2 ?   -3.2   0.1         5   7.5e+03       2      20 ..      63      81 ..      62      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
      HTH_38  3 khLsleeReeIerlla..eG..lslreIArrLgrspsTIsREl 41
                ++Ls + R++I +l+    G  lsl+eIA ++++++sT+   l
  CDO72269.1  2 TRLSTAKRQKILDLYHpvNGepLSLSEIAGHVHCDRSTVRQVL 44
                5899**********955577668888*************8766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5
      HTH_38  2 ykhLsleeReeIerllaeG 20
                ++ Ls ++ +e++  l++G
  CDO72269.1 63 PRILSKQDLQELQLALDRG 81
                6789999988888877776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     3e-05     0.045      13      46 ..      21      57 ..       8      63 .. 0.82
   2 ?   -1.6   0.1       1.9   2.8e+03      28      39 ..      98     109 ..      97     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
      HTH_11 13 rgpisgeeLAeeLnvSrrtvrrdIkaLeelg...vpI 46
                 +p+s +e+A + ++ r+tvr+ +++ +++g   ++I
  CDO72269.1 21 GEPLSLSEIAGHVHCDRSTVRQVLQQVSSSGqlnYDI 57
                466***********************99999766665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
      HTH_11  28 SrrtvrrdIkaL 39 
                 S+rtv r+++++
  CDO72269.1  98 STRTVCRRLAEI 109
                 99***9999875 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.047      21      52 ..      21      51 ..       9      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                TSB---HHHHHHHHTS-HHHHHHHHHHHHHTT CS
        GntR 21 GdkLPsereLaaefgVsrttvReALrrLeaeg 52
                G++L s +e+a   + +r+tvR++L++ ++ g
  CDO72269.1 21 GEPL-SLSEIAGHVHCDRSTVRQVLQQVSSSG 51
                99**.*********************988877 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.4e-05     0.081      16      41 ..      21      46 ..      19      56 .. 0.85
   2 ?   -2.2   0.1       2.6   3.9e+03      31      47 ..      95     111 ..      94     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
                BSS-BHHHHHHHHTS-HHHHHHHHHH CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqt 41
                +++l+lse+A + +  +Stv+  Lq 
  CDO72269.1 21 GEPLSLSEIAGHVHCDRSTVRQVLQQ 46
                579********************997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.6
                 -HHHHHHHHHHHHHTTS CS
    HTH_IclR  31 pkStvhRlLqtLvelGy 47 
                 p ++++  ++ L e G+
  CDO72269.1  95 PHASTRTVCRRLAEIGL 111
                 67899999999999886 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.3e-05      0.14      17      58 ..       4      48 ..       1      56 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.3e-05
     UPF0122 17 LLTekqanylelyya...dDlSlsEiAeefnvsrqavydnikrte 58
                L T k ++ l+ly     + lSlsEiA + +  r++v + +++++
  CDO72269.1  4 LSTAKRQKILDLYHPvngEPLSLSEIAGHVHCDRSTVRQVLQQVS 48
                7799999******8533378*******************999876 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00019      0.28      21      67 ..      23      73 ..       4      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ET.EE.EEES-HHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis..rg.rr.irildleaLra 67
                pl+  e+A ++   r+tv ++l++ +  g +    + ++  ril+ + L++
  CDO72269.1 23 PLSLSEIAGHVHCDRSTVRQVLQQVSSSGQLNydIRpKGrPRILSKQDLQE 73
                8999*************************9997623332388998888887 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.32       8      32 ..      23      47 ..      21      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
                T--HHHHHHHTTSSHHHHHHHHHHH CS
    HTH_AraC  8 nltiediAdelgfSrsyFsrlFkke 32
                +l++ +iA +++++rs+ +++++++
  CDO72269.1 23 PLSLSEIAGHVHCDRSTVRQVLQQV 47
                79*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2215.88
//
Query:       CDO72270.1  [L=159]
Description: hypothetical protein BN946_scf184970.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-13   48.6   0.0    9.4e-13   48.4   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.7e-11   42.7   0.0    5.1e-11   42.6   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.9e-08   34.6   0.0    2.5e-08   34.2   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0052   16.9   0.0     0.0085   16.2   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.1e-16   9.4e-13      35     117 .]      41     138 ..       6     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.1e-16
                     EEE...EEETTEEEEEEEEEEEET..............TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHH CS
  Acetyltransf_1  35 llv...aeedgeliGfisllkipd..............ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairl 111
                     + +   + e  ++++ isl+ +p               ++ +va  + +a +p+y+gkG+G++Ll+++ e a +e g+  i++   +    a + 
      CDO72270.1  41 FHFgafVPESSTPVAVISLFYDPSlssatqnlasqsvdPSSRVARFRKFACDPAYQGKGIGTRLLQHAFEVAAKEmGCSVIWC---DARLSAAGW 132
                     222244788899*****9999999***********************************************************...669999*** PP

                     HHHTTE CS
  Acetyltransf_1 112 YeklGF 117
                     Ye+ G+
      CDO72270.1 133 YERRGM 138
                     **9995 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.1e-14   5.1e-11      55     127 .]      87     159 .]      39     159 .] 0.90

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 1.1e-14
  Acetyltransf_10  55 sllfVdpeyrgqGigkaLleaveee.aekdgikleltvnaspyavpfYeklGFkavgeeqeenGirfvpMekel 127
                        ++ dp+y+g+Gig++Ll+++ e  a+++g +  + ++a   a + Ye+ G+++vg+ +++  i++v+M +el
       CDO72270.1  87 RKFACDPAYQGKGIGTRLLQHAFEVaAKEMGCS-VIWCDARLSAAGWYERRGMRKVGKIFYKGDIEYVRMMREL 159
                      56789*****************99945555555.99999999****************************8875 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.6e-12   2.5e-08      26      73 ..      85     137 ..      54     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 5.6e-12
                     CTEEEEE-GGGTTSSHHHHHHHH.....TT.SEEE.EE.EEEETHHHHHHHHHHTT CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLlea.....ae.kgii.le.qlelnaekaikfYeklG 73 
                        ++a dp+y+gkGiG++Ll++     a+  g+  ++  ++l    a+++Ye+ G
      CDO72270.1  85 RFRKFACDPAYQGKGIGTRLLQHafevaAKeMGCSvIWcDARL---SAAGWYERRG 137
                     344599****************756664225777633355555...679*****99 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.9e-06    0.0085      25      56 ..      84     115 ..      68     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
  Acetyltransf_CG  25 ldfthTeVpeelrGkGiAkkLvkaalddaree 56 
                        f +   +++++GkGi+ +L ++a++ a +e
       CDO72270.1  84 ARFRKFACDPAYQGKGIGTRLLQHAFEVAAKE 115
                      566677789*****************988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1187.25
//
Query:       CDO72271.1  [L=221]
Description: hypothetical protein BN946_scf184970.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-43  147.5   0.0    2.3e-43  147.2   0.0    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    2.2e-20   72.2   0.4    3.8e-20   71.5   0.4    1.4  1  UBA_3      Fungal ubiquitin-associated domain
     0.0015   18.2   0.0     0.0021   17.8   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
       0.15   12.3   0.2       0.28   11.5   0.2    1.3  1  FeoA       FeoA domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   0.0   5.2e-47   2.3e-43       1     139 [.       7     144 ..       7     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 5.2e-47
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltle 98 
                 r++ke+++ +++k+s i+ +lvdd n f++ + + gpedtpYegg F++++ +p++YP++p k+kf+tk++HPn++ +sG++cldiLk+  Wsp+ltl+
  CDO72271.1   7 RVNKEIADCKNDKSSKITIDLVDD-NPFHLIGAFDGPEDTPYEGGRFQVDIVIPDNYPFQPVKMKFITKVYHPNISsASGAICLDILKDA-WSPVLTLK 103
                 789********************8.***************************************************************66.******** PP

                 HHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  99 svllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 s l+s+qsLl +p+p++p ++e+ak++ + r+ ++++++++
  CDO72271.1 104 STLISLQSLLCSPEPRDPQDAEVAKHYMTSRSSFEDTARYW 144
                 *************************************9876 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.4   8.4e-24   3.8e-20       1      55 []     168     221 .]     168     221 .] 0.99

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 8.4e-24
                 S-SS----SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT- CS
       UBA_3   1 deaqlyGidrdlVdefvsqGFekdkvievLkrLgiksldpednetankileELLk 55 
                 de++++G+d+ +V +f++ GFe+ kvi+vL+rL++++++ + n+++++++eELLk
  CDO72271.1 168 DEVAMAGLDKAHVAQFEALGFERAKVIDVLRRLNYRGAN-VANINDDRVVEELLK 221
                 89***********************************99.**************9 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.7e-07    0.0021      34     120 ..      48     129 ..      14     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.7e-07
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgdedaefagE 120
                 +gg +++ +v+pd++p+ p  v  +  +++   p i++ +ga+Cl       d+w p  +++  l +lq +L    +++ +dae+a+ 
  CDO72271.1  48 EGGRFQVDIVIPDNYPFQP--VKMKFITKV-YHPNISSASGAICL---DILKDAWSPVLTLKSTLISLQSLLCsPEPRDPQDAEVAKH 129
                 79*****************..555545534.577888989*****...999*********************9999999999999875 PP

>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   6.2e-05      0.28      14      60 ..     170     215 ..     162     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-05
                 EEEE-TT.SSHHHHHHHHT--TT-EEEEEEE-TTS-SEEEEETTEEE CS
        FeoA  14 iarisdedpellrrLremGlvpGarievvarapfggplvvrvgdtrv 60 
                 +a ++  d+++ ++++++G+   ++i v++r +++g  v  ++d rv
  CDO72271.1 170 VA-MAGLDKAHVAQFEALGFERAKVIDVLRRLNYRGANVANINDDRV 215
                 44.447899*********************9999***9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1721.56
//
Query:       CDO72272.1  [L=618]
Description: hypothetical protein BN946_scf184970.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-36  125.4   1.1    3.6e-33  114.6   0.4    2.7  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    4.1e-16   59.1   1.3    8.4e-16   58.1   0.1    2.1  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    1.8e-07   30.9   0.1      6e-07   29.3   0.0    1.9  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.4   6.1e-37   3.6e-33       2     170 ..       3     209 ..       2     210 .. 0.95
   2 !    8.4   0.0   0.00026       1.5     124     155 ..     579     610 ..     550     612 .. 0.82

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 6.1e-37
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.......TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT-- CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeq......girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriP 92 
                   t+a +++r+L+++g++h+f + Gs+  ++l+ l+++        ++++++ +E +a  aA+gya++tgkp++v+v++ +G+  + +a+++A + ++P
    CDO72272.1   3 TTASVFFRTLANAGITHAFVNWGSDHCAFLEDLHRQYvetgktVVDIITCPSEYVALSAAHGYAQVTGKPAAVIVHVDVGTQAMAGAVHNADRGQVP 99 
                   67899*****************************9989999999***************************************************** PP

                   EEEEEEE--CCCHH................................S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEE CS
  TPP_enzyme_N  93 llvlsgdrptslrg................................qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvyl 157
                   +l+++g++p +  g                                  v+ ++ dq a++r++ +y+ +++s +++ +++ rA+++a s+++gPvyl
    CDO72272.1 100 VLIFAGSAPFTANGelrgsknefqmwlqgsysctppllpfvrdadmYTVTPDVPDQPAIVRQYMRYVAQIQSGKNVDKVIMRALQIASSQPKGPVYL 196
                   ******************************************998644444466******************************************* PP

                   EEEHHHCC-EEEH CS
  TPP_enzyme_N 158 elpkdvlleevde 170
                     +++++++++de
    CDO72272.1 197 WAAREIIDQDADE 209
                   ********99885 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00026
                   SSEEEE-SSGGGHHHHHHHHHHHHHSSS--EE CS
  TPP_enzyme_N 124 tkyaervtspeelpealrrAirtalsgrpgPv 155
                     ++++v++++el++++++A+++ +++r+ +v
    CDO72272.1 579 GAWSRQVARADELQSVFEEAVKVVMQQRRCAV 610
                   479*********************99998776 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.81   4.9e+03      33      75 ..      58     100 ..      42     104 .. 0.57
   2 ?   -2.2   0.0      0.54   3.2e+03     111     145 ..     153     190 ..     138     196 .. 0.72
   3 !   58.1   0.1   1.4e-19   8.4e-16      10     153 .]     453     613 ..     445     613 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.81
                   HHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SE CS
  TPP_enzyme_C  33 glpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpi 75 
                   +l+aA+G +    +   v +  D g++ +  ++ +a r ++p+
    CDO72272.1  58 ALSAAHGYAQVTGKPAAVIVHVDVGTQAMAGAVHNADRGQVPV 100
                   5566666655322223333334555555555555555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.54
                   --HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH.....CS CS
  TPP_enzyme_C 111 vdfaklaealGak.garvekadveeleealkeal.....ek 145
                   +d  ++++++ ++ +a++++   + +++++ +al     + 
    CDO72272.1 153 PDQPAIVRQY-MRyVAQIQSG--KNVDKVIMRALqiassQP 190
                   5777888888.5548999999..999999999986654444 PP

  == domain 3  score: 58.1 bits;  conditional E-value: 1.4e-19
                   HHHHTTSSSSEEECETTTS-TTTHHHHHHHHHH....HST.TSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH...HHHHT CS
  TPP_enzyme_C  10 arllkvkrprsyltsgglgtmGyglpaAiGakl....akp.drevvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmtggq...qepfg 96 
                   ++++  + p+ +++s g +++G+ l+a++Ga+l    ak+    vv+++GDG +l+    + ++ a r+  p++++vlnN+g+   +       p g
    CDO72272.1 453 WNHIAPNAPGCMFMS-GGTSLGWVLGASVGASLgarvAKKsYDLVVSLTGDGNYLFGapTSTYWVARRYETPFLMIVLNNRGWFSPKYSmraVYPDG 548
                   555566667666665.667788888888888886554554247**********666545899**************************966544444 PP

                   CCTTTTSBB........BS----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH....CSSSEEEEEE CS
  TPP_enzyme_C  97 gkrksgpagk.......dlkpvdfaklaealGak.garvekadveeleealkeal....ekkgpaliev 153
                   ++++++   +       +++++d+  +a a+G     +v +a  +el+ +++ea+    +++++a++e+
    CDO72272.1 549 HGSTATG--EqlsvgfgKEHNPDYGGIAVAAGGAwSRQVARA--DELQSVFEEAVkvvmQQRRCAVVEC 613
                   4444443..2468999889***********988868898888..*****99999988889999999986 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         1   6.3e+03     102     116 ..      72      86 ..      62      96 .. 0.59
   2 !   29.3   0.0     1e-10     6e-07       1     137 []     234     367 ..     234     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
                   TT-EEEEEESSCCCC CS
  TPP_enzyme_M 102 peakiihididpaei 116
                   p a i+h+d+  + +
    CDO72272.1  72 PAAVIVHVDVGTQAM 86 
                   445688888765433 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 1e-10
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   ++ ++++l +a+ p+i+  +  ++  a   l++l++ l i v++      +ip dhp++lg ++g          l +aD+v+al ++  ++ ++++
    CDO72272.1 234 VKTIVAALTNAEYPLIVTANPGRNPAAVPLLAALSNILAIGVISCAPSSVAIPADHPHFLGhFFGG-----KLPYLPDADVVIALDVDVPWVDVFDN 325
                   57899******************************************************9954442.....35567999************999887 PP

                   TTTTTTT-EEEEEESSC..CCCTTCC.--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  97 epefapeakiihididp..aeigkny.qvdlaivgdvketleaL 137
                    p+  ++ak+  +d dp   ++g ++ ++d+   +d+ ++l++L
    CDO72272.1 326 APR--SDAKVFILDNDPlkRNFGWSHvHADMLCTADAETALSQL 367
                   774..455899999998555666555246666677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4224.63
//
Query:       CDO72273.1  [L=545]
Description: hypothetical protein BN946_scf184970.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-23   82.4   3.5    1.1e-20   74.0   1.7    3.1  2  TPP_enzyme_N     Thiamine pyrophosphate enzyme, N-terminal TP
    1.1e-19   70.7   0.0    1.9e-19   69.9   0.0    1.4  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
      1e-12   48.0   0.0    1.4e-11   44.2   0.0    2.4  2  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
     0.0015   18.3   3.9     0.0027   17.5   0.9    2.5  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
       0.12   11.5   0.4       0.28   10.3   0.0    1.8  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
       0.21   11.6   9.2       0.44   10.6   3.9    2.6  2  Gly-zipper_Omp   Glycine zipper


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   1.7   3.6e-24   1.1e-20       2     107 ..       3     124 ..       2     145 .. 0.90
   2 !    5.6   0.0    0.0037        11     113     155 ..     493     537 ..     478     539 .. 0.73

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 3.6e-24
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.......TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT-- CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeq......girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriP 92 
                   t+a +l++a +++g++h+f + G++  ++l++l++e+       +++v++ hE +a  aA+gya++tgkp++v+v++ +G+  + +a+++  + r+P
    CDO72273.1   3 TTASILFKAFAEAGITHAFVNWGNDHPAFLEELERERveggktIVEIVTCPHEMVALSAAQGYAQVTGKPAAVIVHVDVGTQGLAGAVHNVDRGRTP 99 
                   67889************************************999***************************************************** PP

                   EEEEEEE--CCCHH..........S CS
  TPP_enzyme_N  93 llvlsgdrptslrg..........q 107
                   +l+++g +p+++ +          +
    CDO72273.1 100 VLIFAGAAPHAKSQpqgpvylwarR 124
                   **********998855555555544 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0037
                   -T.-CCHHHCCCS.SEEEE-SSGGGHHHHHHHHHHHHHSSS--EE CS
  TPP_enzyme_N 113 el.dqlalfrpvt.kyaervtspeelpealrrAirtalsgrpgPv 155
                   e+ d +++++     +  rv+++++l+++l++A+r+  ++++ +v
    CDO72273.1 493 EMpDYSQVAAAAGgAWGKRVERADDLQSVLEEAVRVVVKEKRSAV 537
                   555555554433337999*******************88887776 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   6.5e-23   1.9e-19       9     153 .]     380     540 ..     373     540 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 6.5e-23
                   HHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHH....H.STTSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH...HHHH CS
  TPP_enzyme_C   9 aarllkvkrprsyltsgglgtmGyglpaAiGakl....a.kpdrevvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmtggq...qepf 95 
                   ++ +l+  +p+s+++ +g +++Gy+l+aA+Ga l    a k+++ + a+vGDG fl+    ++++ a r+n p+++v+lnN+g+   +       p 
    CDO72273.1 380 TWSYLRPGQPGSMIS-SGASSLGYALGAAVGAYLgsfvArKEHELIAAVVGDGVFLFGvpASAFWMARRYNTPFLTVILNNGGWFSPKSSmmgVYPD 475
                   566777778888877.69****************8877534578999*******98875679**********************9999996663333 PP

                   TCCTTTTSBB.......BS----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH....CSSSEEEEEE CS
  TPP_enzyme_C  96 ggkrksgpagk......dlkpvdfaklaealGak.garvekadveeleealkeal....ekkgpaliev 153
                   g ++ ++   +      + + +d+ ++a+a+G   g rve+a  ++l+ +l+ea+    ++k++a++++
    CDO72273.1 476 GLGKAASG--QqltvgfGPEMPDYSQVAAAAGGAwGKRVERA--DDLQSVLEEAVrvvvKEKRSAVVDC 540
                   33333332..245788756667********98888*******..**********99999999****996 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   4.8e-15   1.4e-11       2     129 ..     159     281 ..     158     291 .. 0.84
   2 ?    0.8   0.0      0.12   3.7e+02      10      49 ..     420     459 ..     418     498 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 4.8e-15
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   + +a++l +a+ p+i++ +  ++ ++   l  l+  l i v+t+   + +ip++hp+y+g ++g       n++l++aD++++l ++  +i  +g++
    CDO72273.1 159 STIADALLQARFPLIIAANSGRNPNTVPLLSTLSTLLAIGVFTSCPSAVCIPWTHPNYIGlSFG-----GKNDLLDHADVIIILDVDIPWIDAVGNK 250
                   5789******************************************************885544.....66************************88 PP

                   TTTTTT-EEEEEESSC..CCCTTCC--SEEEECT CS
  TPP_enzyme_M  98 pefapeakiihididp..aeigknyqvdlaivgd 129
                   p+  ++a++  id dp  +++g ++ vd ++++ 
    CDO72273.1 251 PR--EDARVFVIDADPlkTTMGWSH-VDAELLCR 281
                   84..234788888887546677766.66666554 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
                   H-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGT CS
  TPP_enzyme_M  10 aakrpvilvGggvarsgaseelrelaeklgiPvvttlmgk 49 
                   +++ ++ +vG gv  +g+ + +  +a++++ P++t     
    CDO72273.1 420 EHELIAAVVGDGVFLFGVPASAFWMARRYNTPFLTVILNN 459
                   56777889*************************8876554 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.9   9.1e-07    0.0027       2      30 ..     401     429 ..     400     429 .. 0.91
   2 ?    0.2   0.1      0.24   7.2e+02      27      32 ..     502     507 ..     495     515 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.1e-07
  Rick_17kDa_Anti   2 GaliGAaaGgvaGaaigggggrvlGavvG 30 
                      G ++GAa+G+++G+ ++++ + +++avvG
       CDO72273.1 401 GYALGAAVGAYLGSFVARKEHELIAAVVG 429
                      5689************777*********9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
  Rick_17kDa_Anti  27 avvGAa 32 
                      a++G+a
       CDO72273.1 502 AAAGGA 507
                      222222 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.4e-05      0.28     115     171 ..     402     460 ..     391     485 .. 0.73
   2 ?   -3.6   0.1       1.7     5e+03       3      33 ..     511     541 ..     510     543 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
  DXP_synthase_N 115 tsisaalGlavardlkg.ekkkvvaviGDgaltgGmafealnnigelkkkll.vilNdN 171
                      ++ aa+G +  + ++  e++ + av+GDg +  G+   a+  + + ++ +l vilN+ 
      CDO72273.1 402 YALGAAVGAYLGSFVARkEHELIAAVVGDGVFLFGVPASAFWMARRYNTPFLtVILNNG 460
                     3556666666666655515566778*******************999887652677754 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
  DXP_synthase_N   3 kinspedlkklskeeleelaeelrefliesv 33 
                     ++++ +dl+++ +e ++ + +e r+ +++ +
      CDO72273.1 511 RVERADDLQSVLEEAVRVVVKEKRSAVVDCI 541
                     6788899999999999999999999988765 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.9   0.00015      0.44       2      31 ..     401     429 ..     390     432 .. 0.67
   2 ?    3.3   0.2     0.028        85      30      43 ..     500     513 ..     499     516 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggrgtGaliGAavG 31 
                     G a+GAa+Ga +G+ v  r    li+A+vG
      CDO72273.1 401 GYALGAAVGAYLGSFVA-RKEHELIAAVVG 429
                     55667777777777766.556666666666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
  Gly-zipper_Omp  30 vGaavGgliGaamd 43 
                     v aa+Gg++G+ ++
      CDO72273.1 500 VAAAAGGAWGKRVE 513
                     56899999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3883.79
//
Query:       CDO72274.1  [L=354]
Description: hypothetical protein BN946_scf184970.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0058   17.2   0.0        1.7    9.3   0.0    3.3  2  DNA_ligase_A_C  ATP dependent DNA ligase C terminal region


Domain annotation for each model (and alignments):
>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.014   2.5e+02      15      41 ..      19      45 ..       9      69 .. 0.81
   2 !    9.3   0.0   9.6e-05       1.7      20      88 ..     204     305 ..     202     313 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.014
                    TTEEEEEEEE-SS--HHHHHHHHHHHG CS
  DNA_ligase_A_C 15 dgkleyvgkvgtGfsdaeleelrkklk 41
                    + +l++++ v+  f++a+ ++l+++l+
      CDO72274.1 19 KPTLVSLCTVSRQFQAASERALYNTLQ 45
                    66799*******************997 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 9.6e-05
                     EEEEE-SS--HHHHHHHHHHHG....GGEECTTCE.SS---HHHHTT.EE.......................E-TT-EE..........EEEES CS
  DNA_ligase_A_C  20 yvgkvgtGfsdaeleelrkklk....elerkkppf.aekvpeeekrd.vW.......................vePelvv..........eVkfa 75 
                      v++v+t f++++le+ r++l+    +l+++k+++ +    ++++ d  +                       v     +          eV  +
      CDO72274.1 204 PVCRVKTCFTHSRLEDKRTELDilaaSLRQSKKRLrT-LDIADSSYDaGFslellrrvtdvslsselryigtlV-----LpvvgqqlrciEVDVS 292
                     6999999999999999999999888855555555531.222222222222333333334444444433344441.....2444555566899999 PP

                     EEECTSSSTTEEC CS
  DNA_ligase_A_C  76 eitasgkykaslR 88 
                     e+ +s++++a+lR
      CDO72274.1 293 EWDPSPTHPAALR 305
                     9999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2405.89
//
Query:       CDO72275.1  [L=285]
Description: hypothetical protein BN946_scf184970.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-39  133.3   0.0    9.3e-39  132.9   0.0    1.1  1  adh_short       short chain dehydrogenase
    1.7e-29  103.1   0.0    2.1e-29  102.7   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    5.9e-10   39.3   0.0    1.1e-09   38.5   0.0    1.4  1  KR              KR domain
     0.0011   18.5   0.1     0.0042   16.6   0.1    1.8  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0015   18.5   0.6      0.003   17.5   0.6    1.7  1  NAD_binding_10  NAD(P)H-binding
     0.0062   15.7   0.0     0.0087   15.2   0.0    1.2  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   3.1e-42   9.3e-39       2     191 ..       6     198 ..       5     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 3.1e-42
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v ++tG s G+Gr + + +++++ +vv+++r   +l+ ++++ ++  +++l+++vDvt  eeve ++++a+  +g++dv+vnNAG ++ g+++++++++
  CDO72275.1   6 VWFITGTSTGFGRTLTELVLERDERVVATARDLTTLHDLLAKYGQ--DRLLVVKVDVTRIEEVEVAFARAKLGFGRIDVVVNNAGYAHLGEVESMDDST 102
                 568*****************************************8..69************************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEESSBSSHHHHHHC CS
   adh_short 101 wervievNltgvflltravlpaml....kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelap.tgirvnavaPGlvdTdmakelr 191
                  ++++e+N+ g++++tr +++ +      + +Gr  ++sSv g v++   + Y+AsK+a++g+t+sl++el p ++i+++ + PG ++T+ + ++r
  CDO72275.1 103 AREIFETNFWGALKVTRRAIEFFResnpPGVGGRLLQISSVLGVVGLGAHTFYAASKFALEGMTESLSQELDPaWNINITLIEPGWFRTAAVSKIR 198
                 **********************9977777889***************************************98367*************9988765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   7.1e-33   2.1e-29       1     191 [.      11     206 ..      11     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 7.1e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   G   g Gr + +++ e+  +vv+t ++      +++l +++g++   v+++DVt+ e+ve ++++++  fg++D++vnnag+a+   g++++++++ 
    CDO72275.1  11 GTSTGFGRTLTELVLERDERVVATARDLTT---LHDLLAKYGQDrllVVKVDVTRIEEVEVAFARAKLGFGRIDVVVNNAGYAHL--GEVESMDDST 102
                   566899******************999887...999999999887655*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC......CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg......gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTlaasgikg 184
                    ++++++n+ ++++++++a++ ++e+      g+++ +ssv + +++  ++ y+a+K ale++t +l  el p  +i +  + pg+ +T a+s+i+ 
    CDO72275.1 103 AREIFETNFWGALKVTRRAIEFFRESnppgvgGRLLQISSVLGVVGLGAHTFYAASKFALEGMTESLSQELDPaWNINITLIEPGWFRTAAVSKIRW 199
                   *********************88887789999*****************************************77*******************987 PP

                   HHHHHHH CS
  adh_short_C2 185 fdellee 191
                   +++  ++
    CDO72275.1 200 APQHPAY 206
                   7665555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   3.7e-13   1.1e-09       3     178 ..       7     184 ..       6     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3.7e-13
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-.EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealga.evevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  +itG   g+G++l++  +e+  +++v ++R+       ++l + l+++g  +  vv++Dv+  ++ve +++++k  +++i  v++ Ag ++ + +e+m
  CDO72275.1   7 WFITGTSTGFGRTLTELVLER-DERVVATARDL------TTLHDLLAKYGQdRLLVVKVDVTRIEEVEVAFARAKLGFGRIDVVVNNAGYAHLGEVESM 98 
                 57**********999877666.67899999*93......34555667775548999*******************999********************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT........S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--B CS
          KR 101 taedleqvlapKvkGawnLhelled........esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglw 178
                 ++++ +++++  + Ga  + +   +             ++ +SS+ g++g   ++ Yaa    l+++ e+ +++  pa  in++l+
  CDO72275.1  99 DDSTAREIFETNFWGALKVTRRAIEffresnppGVGGRLLQISSVLGVVGLGAHTFYAASKFALEGMTESLSQELDPAWNINITLI 184
                 ****************99986554444446555566789*******************************************9987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.4e-06    0.0042       2     158 ..       8     171 ..       7     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S---HHHHH....H CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfke....e.qpdavihlAavggvaass....e 82 
                 ++tG +   G+ l++ +le++ +v++ +r+ ++ +      l          +v++d+t  +++e +f++    + ++d+v++ A++++ ++      +
  CDO72275.1   8 FITGTSTGFGRTLTELVLERDERVVATARDLTTLHD-----LlakygqdrlLVVKVDVTRIEEVEVAFARaklgFgRIDVVVNNAGYAHLGEVEsmddS 101
                 79**99999**************9999999444433.....234447899999*********9999998722222469*******99888764311113 PP

                 SHHHHHHHHTHHHHHH....HHHHHHHTCT....EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHH CS
   Epimerase  83 dpadfieknlqgtlnl....leaarkagvk....rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaa 158
                 ++ +++e+n+ g+l++    +e  r++++     rll++sS  v G +                ++ Yaa+K a e ++e++ +
  CDO72275.1 102 TAREIFETNFWGALKVtrraIEFFRESNPPgvggRLLQISS--VLGVVGL------------GAHTFYAASKFALEGMTESLSQ 171
                 55678889987766551111566667766667799999999..5553333............4556688888888888877766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   9.9e-07     0.003       5      69 ..      15      88 ..      11     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.9e-07
                    HHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES-- CS
  NAD_binding_10  5 kvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealk.......gadaVvsalg 69
                    + Gr l++  l+r + +v+a +R+   l++l     +++l vv++dvt  e+++ a++        +d+Vv ++g
      CDO72275.1 15 GFGRTLTELVLER-DERVVATARDLTTLHDLLakyGQDRLLVVKVDVTRIEEVEVAFAraklgfgRIDVVVNNAG 88
                    679**********.69**********999987455569*******************977777766788888874 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.9e-06    0.0087       3      74 ..       7     102 ..       5     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-06
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH.....--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkea.....kpdvvvnaAAytavDkaEseeeaa 74 
                    + +tG +   G+ L++++ e++  v+a+ r+                   ++d+t+ e+v+ +++ a     + dvvvn A y    ++Es  ++ 
     CDO72275.1   7 WFITGTSTGFGRTLTELVLERDERVVATARDlttlhdllakygqdrllvvKVDVTRIEEVEVAFARAklgfgRIDVVVNNAGYAHLGEVESMDDST 102
                    579***************************9*******************************9987722222579***************986643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1950.33
//
Query:       CDO72276.1  [L=294]
Description: hypothetical protein BN946_scf184970.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-32  113.1   0.0    1.5e-32  112.7   0.0    1.1  1  adh_short       short chain dehydrogenase
    2.2e-26   92.9   0.0    2.8e-26   92.5   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    8.1e-10   38.9   0.0    1.4e-09   38.1   0.0    1.3  1  KR              KR domain
    3.9e-05   23.6   0.2    5.6e-05   23.1   0.2    1.3  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.084   13.0   0.1        0.2   11.8   0.1    1.5  1  DUF4232         Protein of unknown function (DUF4232)
       0.25   11.1   0.8        6.5    6.6   0.0    2.5  2  PriCT_1         Primase C terminal 1 (PriCT-1)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   4.9e-36   1.5e-32       8     189 ..      10     194 ..       7     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 4.9e-36
                 TTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHH CS
   adh_short   8 assGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervie 106
                 a++G+Gra+ + ++++G + v+++r  +++  ++++  +  +++l+i++Dvt+ +ev +++++++  +g+ldv+ n A+   +g+++ + +e+ ++ ie
  CDO72276.1  10 ATAGLGRALTELVLAKGDTAVATARGVSAIDDLKAQYPS--DRLLVIKMDVTKPQEVADAFAEVKRTVGRLDVVFNSAASGAFGEVETVRDEDARAEIE 106
                 789***********************9999999999885..79******************************************************** PP

                 HHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEESSBSSHHHHH CS
   adh_short 107 vNltgvflltravlpaml....kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelap.tgirvnavaPGlvdTdmake 189
                 vN+ g+  ++r+ ++ +      + +Gr  +vsS++g  +++g+  Y+AsK+a++gl+++la el p ++i+v+ v P + +T+ +++
  CDO72276.1 107 VNFWGAWYVSRESVKFFRevnaPGVGGRLLQVSSMTGVIGSPGLGFYCASKFALEGLSEALAAELDPaWNIKVTLVEPDAYRTPGRRK 194
                 ****************9988778899***************************************98367**********99998776 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   9.4e-30   2.8e-26       3     182 ..      11     195 ..       9     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 9.4e-30
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                     g+Gra+ +++ ++G + v+t ++ +a   +++l+++++++   v+++DVt++++v+++++ev++++g+lD+++n+a+      g+++++ +e+ +
    CDO72276.1  11 TAGLGRALTELVLAKGDTAVATARGVSA---IDDLKAQYPSDrllVIKMDVTKPQEVADAFAEVKRTVGRLDVVFNSAASGAF--GEVETVRDEDAR 102
                   489********************99999...9********888655************************************9..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC......CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg......gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTlaasgi 182
                     ++vn+ ++++++++ ++ ++e       g+++ +ss+ + ++ p+   y+a+K ale+l+ +lA+el p  +i+v  v p + +T+  +++
    CDO72276.1 103 AEIEVNFWGAWYVSRESVKFFREVnapgvgGRLLQVSSMTGVIGSPGLGFYCASKFALEGLSEALAAELDPaWNIKVTLVEPDAYRTPGRRKV 195
                   *******************77664456699*****************************************77*************9977665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.8e-13   1.4e-09       9     178 ..      11     182 ..       9     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 4.8e-13
                 TSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHH CS
          KR   9 lGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedl 105
                 + gLG++l++  ++kg + +  ++R         + i+ l+a+    +  v+++Dv+++++v+ +++e+k++ +++  v+++A   + + +e++ +ed 
  CDO72276.1  11 TAGLGRALTELVLAKGDTAV-ATARG-------VSAIDDLKAQypSDRLLVIKMDVTKPQEVADAFAEVKRTVGRLDVVFNSAASGAFGEVETVRDEDA 101
                 67888888888888887764.45666.......34677777775566999************************************************* PP

                 HHHHTTTTHHHHHHHHHTTT........S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE--B CS
          KR 106 eqvlapKvkGawnLhelled........esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwglw 178
                 ++ ++  + Gaw + + + +             ++ +SS+ g++gs+g + Y a    l++l e  +++  pa  i+ +l+
  CDO72276.1 102 RAEIEVNFWGAWYVSRESVKffrevnapGVGGRLLQVSSMTGVIGSPGLGFYCASKFALEGLSEALAAELDPAWNIKVTLV 182
                 **************987766663344445556799*************************************999998876 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   1.9e-08   5.6e-05       2      73 ..      10      90 ..      10     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.9e-08
                    TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT...TTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC CS
  NAD_binding_10  2 AtGkvGrllvkellargghevtalvRnpeklaeleae...eglevvegdvtdvedlaealk.......gadaVvsalggggk 73
                    At + Gr+l++  la+g  + +a +R  + +++l+a+   ++l v+++dvt+++++a+a++         d+V+ ++++g+ 
      CDO72276.1 10 ATAGLGRALTELVLAKG-DTAVATARGVSAIDDLKAQypsDRLLVIKMDVTKPQEVADAFAevkrtvgRLDVVFNSAASGAF 90
                    78899***********6.7889**********9995544489******************9565555445888888865544 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.6e-05       0.2      61     125 ..      17      80 ..       6      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
     DUF4232  61 aavpvtLapGesAyaglrwtnaggdgdgectaaglrvtppdgtksvtvpdlgatgtdvdvgkltv 125
                 a ++++La G++A a+ r ++a +d +++ +++ l v+  d tk+++v+d + ++ + +vg+l+v
  CDO72276.1  17 ALTELVLAKGDTAVATARGVSAIDDLKAQYPSDRLLVIKMDVTKPQEVAD-AFAEVKRTVGRLDV 80 
                 334499**************************9**************993.44445555666665 PP

>> PriCT_1  Primase C terminal 1 (PriCT-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0022       6.5      44      61 ..     204     221 ..     201     222 .. 0.90
   2 ?    2.3   0.3     0.046   1.4e+02      57      67 .]     269     279 ..     267     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
     PriCT_1  44 rlepPLdesEvrktarSv 61 
                 +++++L++s++r++++Sv
  CDO72276.1 204 YSKSDLPASQLRAIWDSV 221
                 6689*************8 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.046
     PriCT_1  57 tarSvarwvwr 67 
                 t +S++r++w+
  CDO72276.1 269 TSTSIYRRTWN 279
                 779*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2157.23
//
Query:       CDO72277.1  [L=1054]
Description: Glycoside Hydrolase Family 35 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-61  206.4   0.0    1.9e-59  201.9   0.0    2.1  1  Glyco_hydro_35  Glycosyl hydrolases family 35
    1.7e-57  193.0   1.8    1.6e-31  109.2   0.0    2.9  2  BetaGal_dom4_5  Beta-galactosidase jelly roll domain
    4.6e-36  124.3   0.9    7.8e-36  123.6   0.9    1.3  1  BetaGal_dom2    Beta-galactosidase, domain 2
    1.4e-18   66.2   0.0    4.7e-18   64.5   0.0    1.9  1  BetaGal_dom3    Beta-galactosidase, domain 3
     0.0039   16.6   0.0      0.033   13.5   0.0    2.1  1  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_35  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0   5.2e-63   1.9e-59       2     311 ..     106     414 ..     105     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 201.9 bits;  conditional E-value: 5.2e-63
                     EEETTEEE-EEEEEE-GGGS-.GGGHHHHHHHHHHCT-SEEEEE--HHHH-SCTTB---SGGG-CHHHHHHHHHCT-EEEEEEES---TTBGGGG CS
  Glyco_hydro_35   2 llidgerflllsGeihyfRlp.pelWedvlekvkalGlnaietYveWnlhepkegkydfeGaldlekFlklaqeagLyvilRpGpYicaEwdaGG 95 
                     l++ g+r++l sGe+h fRlp p+lW d+++k+ a+Gln +++Y++ +l +p++g +df+  + l++ +++a+ ag++++lRpGpYi+aE+ aGG
      CDO72277.1 106 LFLHGQRLFLHSGEFHTFRLPvPDLWLDIFQKMVAAGLNGVSIYIHMGLTNPAPGVIDFNDWRALQSIFDAAKLAGIFIVLRPGPYINAETTAGG 200
                     8899******************************************************************************************* PP

                     --GGGGGSTTS-TTSS-HHHHHHCHHHHHHHHHHHHHCBGGGTSSEEEEEESSSGG.GT---HHHHHHHHHHHCCCT-SSCBEEECESTTTCCCT CS
  Glyco_hydro_35  96 lpaWllkkkeiklRssdeafleavekyleailkkvkkllltnGGpiilvQvEneYg.skavdkaylralakalkeklaekallftadvpseevae 189
                     +++W ++   ++lR++ +++++a+e y++ i+k+  +  +t GGp+++vQv+neY+ s  + ++y ++l+k++++ +    l+++  +  +++ +
      CDO72277.1 201 IAHWATSLVAGTLRTNASDWTAAYEPYINGIIKETVPNEVTSGGPVLAVQVDNEYSqSPITRAEYFANLEKQYRDGGLLVPLTYNDPGMGRNFIN 295
                     ********************************************************87888999**99999999987763333333344444555 PP

                     TSSTTT.SCEEEEEECTTS.T..........HHHHHHHHHH-TTS--EEEEEESS---BTTS--HHHHHHHCCHHHHHHHCCC......SEEEEE CS
  Glyco_hydro_35 190 kgtlpeedilatvgfgsdaka..........keafkllkefspekPlvvsefwtgwfdewgekkaarsaeelaeevervlakn.....issvnlY 269
                     ++++   di+  ++++ + +           +++ + + e++p++P  ++ef++g fd+wg++ +  ++  +  ++++v++k+     ++++++Y
      CDO72277.1 296 GTGAV--DIYGLDSYPQGFDCsnpthwapvvTNYHQYHIENNPSEPWYMPEFQGGSFDPWGGPGYDACEVLTGPDFQDVFYKQnwasnVKLISYY 388
                     54554..59999999888444455788888777777789******************************************99999999****** PP

                     ECE--B-GCC-B-CCTT.SB--TT-SB-TTS---HHHHHHHH CS
  Glyco_hydro_35 270 MihGGTnfGflaganflgtsYdydApldEagnltpkylelke 311
                     M++G                Ydy++ + E++ l+pk+ e+k+
      CDO72277.1 389 MFYG----------------YDYGSSIRETRALSPKFDEIKR 414
                     **98................7888888888888888877775 PP

>> BetaGal_dom4_5  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.4   1.2e-26   4.5e-23       1     114 []     739     853 ..     739     853 .. 0.93
   2 !  109.2   0.0   4.6e-35   1.6e-31       1     112 [.     903    1018 ..     903    1020 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.2e-26
  BetaGal_dom4_5   1 Yderqgwhlpgkttsnnskwplt....vlyssdygfhagvrlyrgtfdldlpsgldvslsltlsggtafrvsvwlNGyqlgsyv.phigpqvtFp 90 
                     +d++ +w+++++tt+n +++pl     vl+++dygf+++++l+rg+f    +s + +s++lt++gg++f++svw+N++ + ++  +  + +  F+
      CDO72277.1 739 FDDS-AWVVANHTTTNITRKPLFgdgrVLFGCDYGFCENNVLWRGHF---NGSTSTTSVNLTINGGSSFAASVWINDKLIDTVHnGADQINALFT 829
                     8999.**************9988999*********************...9999****************************6634466677789 PP

  BetaGal_dom4_5  91 vpegilnyngenvlavlvdamged 114
                     +peg ++  ++nv++vl+d+mg+d
      CDO72277.1 830 FPEGSVKIGEDNVVTVLQDHMGND 853
                     9********************986 PP

  == domain 2  score: 109.2 bits;  conditional E-value: 4.6e-35
  BetaGal_dom4_5    1 Yderqgwhlpgkttsnnskwpltvlyssdygfhagvrlyrgtfdldlpsgldvslsltl.....sggtafrvsvwlNGyqlgsyvphigpqvt 88  
                      ++erqgwhlpg++ s+++  +++ l+ +  + +agv ++ +tfdl++psg+d+ ls+++     ++g+a+r+ +++NG+++g+ v+++gpq +
      CDO72277.1  903 FGERQGWHLPGFDLSSAN-FTARGLSEGLPSGGAGVGFFVTTFDLKIPSGTDTMLSFVFdggsgNSGQAYRALLFVNGWKFGKRVANVGPQAS 994 
                      89***********95533.33234555555599*******************************9**************************** PP

  BetaGal_dom4_5   89 Fpvpegilnyngenvlavlvdamg 112 
                      Fpvp+gil+y+g+n++av+++a++
      CDO72277.1  995 FPVPPGILDYDGKNTVAVALWALN 1018
                      *********************987 PP

>> BetaGal_dom2  Beta-galactosidase, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.9   2.2e-39   7.8e-36      14     169 ..     442     599 ..     434     612 .. 0.81

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 2.2e-39
                   .BS-TTEEEEEEE-.STT-EEEEEEESSTT---EEEE-EEEEETT.EEEEE-TTSS-EEEESS-EEEEEEEEEET.TEEEEEESSEEEEEEEETTEE CS
  BetaGal_dom2  14 ttsnsaiavtelrnpdtkasFyvvrhadysslestsfklkvnTsaaGnltiPqlggsltLngrdSKilVtDYdvG.gktLlYStAEvlTwkklddkt 109
                   ++sns+ ++t l+npdt+++F++ r++d++s++s sf+++v+Ts +G+lt+P + g + L+gr+SK++VtDY++G + ++lYStA ++   ++++++
    CDO72277.1 442 NVSNSEAFITLLKNPDTGTGFFISRQTDSTSTSSISFNITVPTS-HGTLTLPLTTGAIALDGRQSKVIVTDYSFGsKGSVLYSTASIFFAGTIGSRD 537
                   4689****************************************.6*****************************5579****************** PP

                   EEEEEE-TT-EEEEEEE-...SS-..EEEEESTEEEE-SSEEEEEEE--SS.-EEEEE.T.TEE CS
  BetaGal_dom2 110 vlvlYggegetgefalkg...kskgsssvvegskikskngalvlnwytqsegrtvvkl.gngll 169
                   vl l+g++++++e a++     +  +ss v +s++++++g ++++  + + ++ +v++ +++++
    CDO72277.1 538 VLFLFGDADQSHEAAIAFtgnGARIQSSRVRFSTSRASRGVTTVT--VLPGSTGLVTIwDSDTQ 599
                   ****************98554333345555555666666666666..33333455555333444 PP

>> BetaGal_dom3  Beta-galactosidase, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   1.3e-21   4.7e-18       1      68 [.     613     692 ..     613     701 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.3e-21
  BetaGal_dom3   1 WvpdltssPaes..............enessviVkGpYLvRsasi..sgstLaltGDlnatttleviapssvktltwNgkklet 68 
                   W+p++   P+++              +n+  v+V GpYLvR+as+   g+tLal+GDln+t+ l+viap sv+++twNg+++e 
    CDO72277.1 613 WAPAV---PSATrnsisgfehfwqfgTNT-IVLVGGPYLVRNASLadGGRTLALRGDLNSTVMLTVIAPPSVSAVTWNGQRVES 692
                   77777...444445577788888874455.9**************755569******************************985 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.1e-06     0.033      10     153 ..     129     274 ..     122     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.1e-06
                     CHHHHHHHHHHHHT--EEEE-TT-HHHH-SBTTB---HH...HHHHHHHHHCTT-EEEEE-S........TTS--HHHHHH-GGGS-B-TTS-B- CS
  Glyco_hydro_42  10 eaweedirlmkeagvnvvrlgefaWaklePeegkydFew...LdevldllekagikviLatp........taapPaWlvkkyPeilavdadgskr 93 
                     + w + +++m  ag+n v++ +     ++P  g  dF+    L+ ++d ++ agi ++L+++         +++ +W +     +l+++a++   
      CDO72277.1 129 DLWLDIFQKMVAAGLNGVSIYIHM-GLTNPAPGVIDFNDwraLQSIFDAAKLAGIFIVLRPGpyinaettAGGIAHWATSLVAGTLRTNASD--- 219
                     679999*************87665.5789******9975588*******************9888666544455555555555555544433... PP

                     -SSSS----TT-HHHHHHHH.HHHHHHHHHHTT-TTEEEEE-SSSTTTT....S--SHHHHHHHH CS
  Glyco_hydro_42  94 kfgsrqhiclsspvyrekva.kivealaerYkdhpavilwhidnEygch....ecycetceeaFr 153
                                  +y  ++   i e + ++ ++ + v+++++dnEy++     + y  + e+++r
      CDO72277.1 220 ----------WTAAYEPYINgIIKETVPNEVTSGGPVLAVQVDNEYSQSpitrAEYFANLEKQYR 274
                     ..........3334444443135567788888888888888888888876666667777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 6794.19
//
Query:       CDO72278.1  [L=132]
Description: hypothetical protein BN946_scf184970.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 965.45
//
Query:       CDO72279.1  [L=141]
Description: hypothetical protein BN946_scf184970.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   16.1   0.0     0.0095   15.4   0.0    1.3  1  adh_short  short chain dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.3e-07    0.0095     151     186 ..      14      50 ..       8      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-07
                 HHHHHHHHHHHHHHHHHGGG.TEEEEEEEESSBSSHH CS
   adh_short 151 AsKaavagltrslakelapt.girvnavaPGlvdTdm 186
                 +s aa++glt++l +el p+ +i+v+ + PG  +T+ 
  CDO72279.1  14 SSFAALEGLTEALVQELDPKwNIKVTLIEPGWYKTEG 50 
                 6779*************98626************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1049.92
//
Query:       CDO72280.1  [L=751]
Description: Glycoside Hydrolase Family 15 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-26   92.6   0.0    4.3e-17   62.0   0.0    2.1  2  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.4e-21   4.3e-17       4     125 ..     320     448 ..     317     450 .. 0.88
   2 !   28.5   0.0   3.5e-11   6.3e-07     254     378 ..     567     671 ..     539     711 .. 0.85

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.4e-21
                     HHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHH.HHHHHHHHCT CS
  Glyco_hydro_15   4 ldlylrnvktlilleqnpvtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrg.lleamvrqag 88 
                     ++++ r++ +l+ll+++p tG+++ASp+ s+p         DYr+ W+RDs++++ a+++lg+  e++a+++ + + +  l  g +l+  +  + 
      CDO72280.1 320 KEAVTRSALALKLLIYEP-TGAVVASPTFSLPeylggtrnwDYRASWIRDSSFTLYALIRLGFTHEANAYMEFIFERCSVLLIGtILRYTIHVEC 413
                     68999*************.*******************************************999*******98777666555536666555544 PP

                     S.-BTTB-TTSCGGGG--EE-TTS-B--S-..-S--BT CS
  Glyco_hydro_15  89 k.vekfketqstkgLhakyftktgstvvGddewghlQl 125
                     +  ++f e+++t   h+ + ++++++++G+ + +h+Ql
      CDO72280.1 414 TgEKEFPEVELT---HLDGHKGSKPVRIGNGAIDHVQL 448
                     413789******...**********************7 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.5e-11
                     HHTTS--S-BCHHHHHHHHCS-TTS-TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS--SBTT--CGSSSBSCT--BHHHHHHHHHHH CS
  Glyco_hydro_15 254 qvqeyrealdasllllpelyfvpaddvdeeyqnpqsprllaqslyildsllsegflavgeldplvrRysedvkpdklglsGrpyylctlwtvetl 348
                     q +e  + ld++ll++p + f ++ d          pr+l+++++il s ++ g+ ++g    lv+Ry  ++ +d++g++++ + lctlw     
      CDO72280.1 567 QSYEDLDILDSALLIMPLVFFSTPVD----------PRFLSTLRQILLSPERGGLTSNG----LVYRYDVKKTDDGVGGEEGTFCLCTLW----- 642
                     4556678999****************..........*******************8777....5**************************..... PP

                     HHHHHHHHHHTE-EEEECCCHHHHHHHTTT CS
  Glyco_hydro_15 349 ldelyekagkgrlwglvryalglleklves 378
                       e++++ag+    + +++a+g++e++ + 
      CDO72280.1 643 CVEALARAGEYD-KAMLERAVGMFEDFLQY 671
                     777777777765.67889999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5780.20
//
Query:       CDO72281.1  [L=499]
Description: hypothetical protein BN946_scf184970.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-41  142.2   0.0    5.6e-34  118.1   0.0    2.1  2  His_Phos_2  Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
       0.21   11.4   0.2       0.38   10.5   0.2    1.4  1  Gemini_mov  Geminivirus putative movement protein


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   8.4e-09   7.6e-05       2      91 ..     131     202 ..     130     206 .. 0.90
   2 !  118.1   0.0   6.3e-38   5.6e-34     181     383 .]     246     458 ..     213     458 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 8.4e-09
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHH CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfr 91 
                 +++v ++ RHG+R+P  +   ++ s  +   +               k ++f++ y        ++ l++++ l+++G  q++e+G+  +
  CDO72281.1 131 ITQVNILQRHGSRYPNADDGQNYSSAVDHLAS---------ADKFRDKRLKFLEEY--------KYDLGADD-LVPFGASQTFESGQIAY 202
                 789*************************8888.........566778999***888........********.*************9765 PP

  == domain 2  score: 118.1 bits;  conditional E-value: 6.3e-38
                 HHHTGGHCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHH.HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTT CS
  His_Phos_2 181 pikvakrvdelvkylkedmdeniakrleqlcpgesnllakerwdklercfyekn.kfdiskicdlydemkydalhnrylkdleelyklakvipqEygig 278
                  +++a +++ +++ +++ ++++iakrl+   pg+ +l+++++ +++ +c +e   k+++s++c +++e   +++ ++y  dle++yk         g+g
  CDO72281.1 246 DCPNAGDGTREMEIWRSAFAPPIAKRLSRGAPGA-ELTNDDVFNLMAMCPFESVaKETMSPFCAMFTE--DEFRAFEYHGDLEKYYKT--------GYG 333
                 36777889*************************8.*******************9*************..******************........*** PP

                 CCCCHHHHHHHHHHHHHHHCTSSSEECCS....CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS..........TTT..HCCCS-CT-EEE CS
  His_Phos_2 279 peeklkiGllllnpllkkilndlqrtree....atperhvrlrlyfthdshiysllnaLglpeelagedslaa.........ldrlsaspelpymsqiv 364
                 +++++ +G++++n+ll++++  +++++++     +++ ++ ++++fth++ ++++ +a+gl++++ ++d +++          +++ as+++p++s++v
  CDO72281.1 334 EKLGPIQGVGYVNELLARLTGTPVKDHTThnasLEFPLDRVFYADFTHENLMIAVYAAMGLFNVTVPLDPRHMpppdhedpsGQSWVASRMVPFSSRMV 432
                 ***************************99******************************************99************************** PP

                 EEEEEE.......TCTTTEEEEEEEC CS
  His_Phos_2 365 felyed.......ssekkfyvrllls 383
                 +e+  +       ++e+ +yvr+l++
  CDO72281.1 433 TERLACvrpgtdgEEEEGTYVRVLVN 458
                 ******999986544444*****997 PP

>> Gemini_mov  Geminivirus putative movement protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   4.3e-05      0.38       3      57 ..       3      54 ..       1      60 [. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.3e-05
  Gemini_mov  3 saklavplspqnalyqkPrvptaapssselpwsrvgeiailtlvavlvlYLlytl 57
                s+k a+p++p+ a     + +ta+ s +  +w + g i   + + vl+ Y ++t+
  CDO72281.1  3 SSKNAPPTLPTVAA---HVAATADHSRPRREWVTTGCIRTTVTFVVLAAYFAWTW 54
                56667777777766...3456777788899*********999999*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.55
# Mc/sec: 2709.54
//
Query:       CDO72282.1  [L=203]
Description: hypothetical protein BN946_scf184970.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.061   12.9   1.4       0.12   12.0   1.4    1.5  1  TF_Zn_Ribbon  TFIIB zinc-binding


Domain annotation for each model (and alignments):
>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.4   6.4e-06      0.12      11      30 ..     113     142 ..     100     150 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-06
                   C..........HEETSTTCEEESSSSBEEE CS
  TF_Zn_Ribbon  11 l..........veDpergelvCtdCGlVle 30 
                   l          v D+ +g  +C++CG++l 
    CDO72282.1 113 LreeyrkalwrVSDTGSGSCTCPSCGSLLR 142
                   2666666666699**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1423.35
//
Query:       CDO72283.1  [L=334]
Description: hypothetical protein BN946_scf184970.g135 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-21   76.0   0.0      5e-21   75.1   0.0    1.4  1  EHN       Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   2.8e-25     5e-21       2      96 ..       7     109 ..       6     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 2.8e-25
         EHN   2 rpfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearlnsfpqfkteid..g...ldihFihlrs.....akp 90 
                 ++f +svp+++++ l+k+l+l r+p+e + +  +w++G++++e+++l+++Wk+++dWr++ea++n++p f+ +i+  g   ldih++h++      + +
  CDO72283.1   7 KSFALSVPDSDVELLHKKLDLVRFPDELEGA--DWDYGAPLSEIQRLVEHWKSTFDWRKAEAEINKLPMFTRDIEveGhgtLDIHYVHKKRpghflEVR 103
                 6799*********************876665..6*9*************************************95442456********9535554444 PP

         EHN  91 daiPll 96 
                 +++Pll
  CDO72283.1 104 KMLPLL 109
                 556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2290.31
//
Query:       CDO72284.1  [L=389]
Description: hypothetical protein BN946_scf184970.g136 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-26   92.9  47.9    2.6e-26   92.4  47.9    1.2  1  MFS_1     Major Facilitator Superfamily
     0.0029   16.2  28.4     0.0023   16.6  27.2    1.3  1  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4  47.9   2.9e-30   2.6e-26       2     348 ..      59     389 .]      54     389 .] 0.84

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 2.9e-30
       MFS_1   2 llaaflsalarsilgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGl 97 
                 +la+f+++ + + +g++  ++  ++l    ps+i ++ ++  + ++++  ++G++ d +G+r +++ g +l++++ ++++ +++ ++ ++l+  vl G+
  CDO72284.1  59 FLALFCTFGQLNSFGTFQEWYSDHQLRtTPPSTIAWIGSIQLWIFFFSGGFIGHVFDVYGPRVMMMPGTILLVFS-TMMTsLSTKFYqYILAQGVLFGI 156
                 788888888888888888854444444477888******************************************.777757799999*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 g g++f  ++a+i+ +f++  rg a+g++ ag+++G ++ p+    l + +g+ ++  i +++sl a  +  +  +++ ++++ +s+k+       +p+
  CDO72284.1 157 GVGMMFYPSLAAISSYFNR-YRGTALGIAFAGSGVGGVVYPIMFRELFEKVGFGWAVRISGFISLAA--C--CIAVATVSTNQSSSQKK-------TPI 243
                 *******************.***********************************************..5..44444444444444433.......477 PP

       MFS_1 197 vpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglalla 295
                 ++ ++ l+  p+l+ l++++ll+++g+++ +++l  y  ++ ++s +  a+++l+++ ++g+ ++l    +sd lgr  ++++  +++l+++l+++++ 
  CDO72284.1 244 LD-ITVLRDVPFLL-LIAGSLLICLGLFIPFIYLAEY-ATDNHIS-ANAALYVLSAMNAGGILGRLAPPLVSDVLGR--FNVIVPSAFLMGLLAVVFWL 336
                 77.999*****997.**********************.*******.4444444555555555557555555588888..66666677777777777777 PP

       MFS_1 296 vtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                 ++++ + ++++ vl+Gf++g + ++++ ++++  p  + gt +g+  ++ s+g
  CDO72284.1 337 FAKTLTTIIIFAVLYGFFSGAFIAMIIPCVAQISPDGKIGTRIGVLYSIVSFG 389
                 77668888889999*******************************99888876 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  27.2   2.5e-07    0.0023      53     335 ..     106     362 ..     100     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.5e-07
       MFS_2  53 vGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfi.wllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvla 150
                 +G +i ++   +G r   ++ ++i+l+      f++  +s s+kf  ++l++ +l+ i + ++  p  sl+++ ++ +  R ++ ++ +  s +ggv+ 
  CDO72284.1 106 SGGFIGHVFDVYGPRV-MMMPGTILLV------FSTMMTSLSTKFYqYILAQGVLFGIGVGMMFYP--SLAAISSYFNRYRGTALGIAFAGSGVGGVVY 195
                 5666666666666644.5555555555......555555555555427788889999999999877..566777889999******************9 PP

       MFS_2 151 ailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllY 249
                  i+   l+   g       g+ + ++ +  L+++++ +++  t ++          +++k+++l+    v+r+ +fl+l+++ ll  l+l++ +  l+ 
  CDO72284.1 196 PIMFRELFEKVGF------GWAVRISGFISLAACCIAVATVSTNQS---------SSQKKTPILDI--TVLRDVPFLLLIAGSLLICLGLFIPFIYLAE 277
                 9999999999998......999999999999999988887777766.........37899999986..599*********************9999999 PP

       MFS_2 250 yltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallp 335
                 y+t+   +++aa ++l ++ ++++lg +  + +   lg+ n+++ +a l+ +l v+++l+ ++ l++ ++++v++gf+ g++  ++
  CDO72284.1 278 YATDNHISANAALYVLSAMNAGGILGRLAPPLVSDVLGRFNVIVPSAFLMGLLAVVFWLF-AKTLTTIIIFAVLYGFFSGAFIAMI 362
                 9999999999999999999*********999999**************************.****************977755443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 2604.28
//
Query:       CDO72285.1  [L=316]
Description: hypothetical protein BN946_scf184970.g137 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-10   40.1  37.4    5.1e-06   25.7  18.8    2.6  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  10.3   1.7e-08    0.0003       8     102 ..      62     158 ..      50     163 .. 0.80
   2 !   25.7  18.8   2.8e-10   5.1e-06     200     348 ..     173     316 .]     159     316 .] 0.66

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.7e-08
       MFS_1   8 salarsilgpalplalaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagal 102
                  + + +++g++ +++ a++l+ + +s+i+++ +l  ++  ++  +lGr+ d +G+r +l+ g +l++++ ++++ ++  ++ +llv  +l+Gl +g+l
  CDO72285.1  62 CCGQLTAFGAFQTWYAANQLHdLPASTISWIGSLQLWLLYFSGGILGRIFDAYGPRVILIPGSALLVFS-TMIMsVCKKYYqFLLVQGLLTGLSYGML 158
                 33333444444444777777769999*******************************999999999999.555535688888***********99986 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 2.8e-10
       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                  + ++  p+++ l++++ll+ fg+++ +++l  y    +g s g  ++ ++++++ ++++++++  ++l+d +gr  +++ + + ll+++l+l+++ ++
  CDO72285.1 173 ASVVRDTPFIL-LITGCLLINFGLFIPFVYLADY-SIYRGVSsG--TSFYIISAMNAGSIFGRIAPSFLADYIGR--FNIAIPSTLLMGVLALCFWMFA 265
                 45666667665.8888888888888888888888.888888852..44444555555555558888888888877..4444444444444444444444 PP

       MFS_1 298 ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                  s v+++++ +l+G+++g + ++ + ++++    ee gt +g+  ++ s+g
  CDO72285.1 266 RSLVAIIFFAILYGCFSGAFLAMQIPCIAQISKIEEVGTRIGILYSVASFG 316
                 446777777777888888888888888888888888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2115.91
//
Query:       CDO72286.1  [L=219]
Description: hypothetical protein BN946_scf184970.g138 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.029   13.2   0.0      0.037   12.9   0.0    1.1  1  Amnionless   Amnionless
       0.04   14.5   0.1       0.13   12.8   0.0    1.8  2  Alpha_GJ     Alphavirus glycoprotein J
        1.5    8.7   3.9        3.2    7.6   3.9    1.6  1  VPDSG-CTERM  VPDSG-CTERM motif


Domain annotation for each model (and alignments):
>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-06     0.037     284     377 ..     110     204 ..      86     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-06
  Amnionless 284 ssdeeiqivildpekgsyaerlaqelladiaehgealgilsaeletsgasssdssaag....apgesaglvlgivfglvlllllllillllllrrkgv 377
                 + ++ +++++++  + +y   l   + +   ++   ++++s ++ t+++s++d  ++     ++++ +  v+g ++g++l lll++++++++lrr+  
  CDO72286.1 110 DGNHTLELIVTE-ATKEYPFMLDMVMFRISTQQY--QNLASDRATTNSSSGADPASTSstssKSHSVLPAVIGGIIGVALCLLLTTFGVFMVLRRRRH 204
                 567888889998.555555444444444444554..455555555544444444333333556666777788889999**************999865 PP

>> Alpha_GJ  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.84     5e+03      45      60 ..      75      90 ..      53     102 .. 0.71
   2 ?   12.8   0.0   2.2e-05      0.13      59     110 ..     150     202 ..     137     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.84
    Alpha_GJ 45 tganatsaaaastiaa 60
                 + n ts+  ast + 
  CDO72286.1 75 VDGNMTSTRGASTLPG 90
                4567777777777655 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.2e-05
    Alpha_GJ  59 aatvgapptdstvaaetPgpflptdfalPlviGGlc..a..ltlaamGaGallrrc 110
                 a+t ++  +d    a t  ++ ++   lP+viGG+   a  l l++ G   +lrr+
  CDO72286.1 150 ATTNSSSGAD---PASTSSTSSKSHSVLPAVIGGIIgvAlcLLLTTFGVFMVLRRR 202
                 3333333333...35677778888899*******8622311345677777777774 PP

>> VPDSG-CTERM  VPDSG-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.9   0.00054       3.2       9      26 .]     186     203 ..     178     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00054
  VPDSG-CTERM   9 laLLglgLlgLlglRRrr 26 
                  l LL++ ++++++lRRrr
   CDO72286.1 186 LCLLLTTFGVFMVLRRRR 203
                  77***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1531.16
//
Query:       CDO72287.1  [L=338]
Description: hypothetical protein BN946_scf184970.g139 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0084   16.1   0.0      0.012   15.6   0.0    1.2  1  PTP_tm    Transmembrane domain of protein tyrosine phosphatas
  ------ inclusion threshold ------
      0.088   12.7   0.0       0.15   12.0   0.0    1.4  1  PDGLE     PDGLE domain
       0.44   10.0   4.1        1.1    8.7   4.1    1.7  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> PTP_tm  Transmembrane domain of protein tyrosine phosphatase, receptor type J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06     0.012     157     184 .]     155     186 ..     130     186 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-06
      PTP_tm 157 iaGavlGcilgalvi....vavgGfifwrkkr 184
                  +Ga++G +lga++i     a+g f++wr++r
  CDO72287.1 155 PVGAIVGGVLGAVAIlalvLALGWFLWWRRRR 186
                 467888888877766111156799******98 PP

>> PDGLE  PDGLE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.4e-05      0.15      51      89 .]     140     178 ..     100     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
       PDGLE  51 talLpDYsfkgaeekkagtsvAgivGvlltlalagligf 89 
                  a+LpD    g+ ++++g +v g++G++++lal++++g+
  CDO72287.1 140 LAPLPDKPETGERTTPVGAIVGGVLGAVAILALVLALGW 178
                 6899999999999999******************99986 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.1   0.00019       1.1      20      38 .]     167     185 ..     155     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
        SKG6  20 VaViiivLlailifvrRRk 38 
                 Va+ ++vL+ + ++++RR+
  CDO72287.1 167 VAILALVLALGWFLWWRRR 185
                 8999************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2252.91
//
Query:       CDO72288.1  [L=246]
Description: hypothetical protein BN946_scf184970.g140 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-17   62.6   1.4      3e-17   62.6   1.4    1.7  2  EB1       EB1-like C-terminal motif
    1.1e-06   28.8   0.3      2e-06   27.9   0.3    1.5  1  CH        Calponin homology (CH) domain


Domain annotation for each model (and alignments):
>> EB1  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.78     7e+03      15      36 ..      80      99 ..      79     100 .. 0.65
   2 !   62.6   1.4   3.3e-21     3e-17       1      41 []     184     228 ..     184     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.78
                HHHHHHHTT----HHHHHHHHH CS
         EB1 15 IEilcqtepeleedlpivkkik 36
                +E l+  + + +++l++++ ik
  CDO72288.1 80 VEKLV--KCKMQDNLEFLQWIK 99
                67788..345556788877665 PP

  == domain 2  score: 62.6 bits;  conditional E-value: 3.3e-21
                 HHHHHHHHHHHHHHHHHHHHH.....TT----HHHHHHHHHHHHS- CS
         EB1   1 LekERdFYFsKLRdIEilcqt.....epeleedlpivkkikkILYa 41 
                 LekERdFYF+KLRdIEil+q+     e e++ d+p++  i+kILY+
  CDO72288.1 184 LEKERDFYFAKLRDIEILVQQqlealEVEGK-DDPVMRDIQKILYS 228
                 8*******************99***666666.*************7 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.3   2.2e-10     2e-06       2     104 ..       3     102 ..       2     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.2e-10
                 HHHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT...HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHT...TSHH CS
          CH   2 eqkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks...efkkleNinlaldvaekklgvpkvlieaedlve...gknk 94 
                 e++ ell+W+n+ l+ +  kv      e++ +G ++c+++++++ +  ++++++++   e++ + N++  l+ + ++ +++k    +e+lv+    +n 
  CDO72288.1   3 ESRTELLAWLNDLLQVNYTKV------EQCGTGGAYCQIMDSIYRDV-PMARVKMNakhEYEFIANFK-ILQNCFRAHKIEKPI-LVEKLVKckmQDNL 92 
                 57899*********9998877......8***************8876.888887777889*******9.7777999******99.*******7766666 PP

                 HHHHHHHHHH CS
          CH  95 svltllaqLf 104
                 ++l+++  + 
  CDO72288.1  93 EFLQWIKRFW 102
                 7777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1731.63
//
Query:       CDO72289.1  [L=358]
Description: hypothetical protein BN946_scf184970.g141 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-07   29.6   0.4    1.2e-06   28.3   0.0    2.0  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.5e-11   1.2e-06       2      48 .]       2      47 ..       1      47 [. 0.94
   2 ?   -3.6   0.2      0.63   1.1e+04      42      47 ..     273     278 ..     272     279 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 6.5e-11
  F-box-like  2 srLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrlvlr 48
                ++LP+E+ + I sy  +++dLl+l+ +++ ++r+a  +p+++  +vlr
  CDO72289.1  2 AQLPPEVFSVIVSYAtSQRDLLALSYTSKAFQRAA--EPRIYESMVLR 47
                78************98899****************..99****99986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.63
  F-box-like  42 Wrrlvl 47 
                 W+rl++
  CDO72289.1 273 WHRLYR 278
                 999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2439.95
//
Query:       CDO72290.1  [L=190]
Description: hypothetical protein BN946_scf184970.g142 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.5    8.7   9.7        2.3    8.0   0.0    2.3  2  ERbeta_N  Estrogen receptor beta


Domain annotation for each model (and alignments):
>> ERbeta_N  Estrogen receptor beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   7.7     0.022     4e+02      46      79 ..       5      38 ..       1      53 [. 0.78
   2 ?    8.0   0.0   0.00013       2.3      12      65 ..      48     101 ..      38     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.022
    ERbeta_N 46 sipsnasdsesssvrqslSpsllWpspghvsplt 79
                s +s++s+s s++ + s+ p + W++++h+s + 
  CDO72290.1  5 SPSSSSSLSSSPASSLSSAPLATWSPAQHMSNVN 38
                445666778888888889999**********874 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00013
    ERbeta_N  12 lpvesspiyipssYvesrhdysalaFysPavlnYsipsnasdsesssvrqslSp 65 
                 l+ +  pi   +s   s   +++++F +  ++ Y++ +  +   +++vr+++S 
  CDO72290.1  48 LHGNAPPIASLPSLAHSLSAFPTMTFVTNDMVHYGTLGRKKGVSEAKVRKTASS 101
                 55666677777778888889*****************99888888999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1384.27
//
Query:       CDO72291.1  [L=937]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-81  270.2   0.0      9e-81  269.6   0.0    1.2  1  Chitin_synth_1   Chitin synthase
    6.3e-29   99.7   0.1    1.2e-28   98.8   0.1    1.5  1  Chitin_synth_1N  Chitin synthase N-terminal
    6.1e-24   84.5   0.1    3.9e-17   62.1   0.0    2.2  2  Chitin_synth_2   Chitin synthase
  ------ inclusion threshold ------
      0.017   15.1  16.6       0.36   10.7  16.6    2.6  1  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.6   0.0     2e-84     9e-81       1     163 []     291     453 ..     291     453 .. 1.00

  Alignments for each domain:
  == domain 1  score: 269.6 bits;  conditional E-value: 2e-84
  Chitin_synth_1   1 mynEdkellarTLkgvmkNieelkkrkkskvwgkdsWkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttqlsvde 95 
                     mynEd+el++rT++gvmkNi++l+kr++sk+wgkd+Wkk+vVcivsDGr ki+++tl+v+aa+gvyq+gvak+ vngk+v+ah++eyttq+sv++
      CDO72291.1 291 MYNEDEELFCRTMHGVMKNIAHLCKRDRSKTWGKDGWKKVVVCIVSDGRLKINSRTLSVIAAMGVYQDGVAKNAVNGKPVVAHIYEYTTQISVTP 385
                     9********************************************************************************************** PP

  Chitin_synth_1  96 elklkenekslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                     ++kl+++e+++vpvq++fclke+n+kkinShrW+fnaf+++lqP+vcvlldvGt+pg++s+y+lwkaf
      CDO72291.1 386 SMKLEGAERGIVPVQIIFCLKEQNQKKINSHRWFFNAFGPILQPNVCVLLDVGTMPGPTSIYHLWKAF 453
                     ******************************************************************98 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.1   2.7e-32   1.2e-28       2      73 .]     219     290 ..     218     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 2.7e-32
  Chitin_synth_1N   2 kkvkLlngnlvldlpvpkkllkalpeeekeseEfthmRYtAvTcdPddftkegytLRqalyg..ReteLlIviT 73 
                      kkv+L++gnlvld  vp+kll+++p +  +++EfthmRY+A+TcdP+df+++g+tLRq +y+  R+teL+Iv+T
       CDO72291.1 219 KKVELFHGNLVLDSAVPTKLLNMCPMR--NEREFTHMRYSAATCDPNDFKDSGFTLRQVHYDppRRTELFIVMT 290
                      89***********************66..9*******************************************9 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   8.7e-21   3.9e-17     204     375 ..     431     605 ..     427     636 .. 0.80
   2 !   20.0   0.2     5e-08   0.00022     423     491 ..     749     816 ..     744     837 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 8.7e-21
  Chitin_synth_2 204 ivlmvdadtkvapdsltrlvaalvkdpeilglcGetk.iankke.sw...vtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgad 293
                     +++++d  t   p s+ +l  a+  ++++ g cGe   +  k        + a q fey +s  l k +es+fG +t lPG fs+yr  a ++ +
      CDO72291.1 431 VCVLLDVGTMPGPTSIYHLWKAFDINSNVGGACGEIVaLKGKYMrNLinpLVAAQNFEYKMSNILDKPLESIFGYITVLPGAFSAYRYIALQNDQ 525
                     56778999999999*********************6413322221121114577*********************************99998866 PP

  Chitin_synth_2 294 gkwvPilvspeiveeysenvvdtlhkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstv 375
                         P+  +  + e+      d +   n ++l edr l   l+ k        +v++a + t +Pd+   l+sqrrrw+n + 
      CDO72291.1 526 TGEGPL-QKYFLGEKMHGAGAD-IFTAN-MYLAEDRILCwELVSKRGGAWILHYVKSAYAVTDVPDQVPELISQRRRWLNGSF 605
                     656664.444455555555555.56666.5799*****8468889999999*****************************764 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 5e-08
  Chitin_synth_2 423 silksklvpviplvllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswGe 491
                     s++++++ + i + lla  lGl  +  +++ + +++++ +l yll  P +  vl +yaf ++ d swG 
      CDO72291.1 749 SLFTNSIFRNIVISLLAT-LGLYFLASLIHFEPWHMITSFLQYLLMAPSYISVLNVYAFANVHDVSWGT 816
                     566777788888888875.8***999999*9************************************96 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  16.6   7.9e-05      0.36       3     182 ..     433     653 ..     431     809 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.9e-05
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaela.spevaivqgpvlv.....m.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq...e 86 
                      +llD  t++ p +++ +   ++ + +v+ ++g +++     m n  n l+  + ++++ + + d +  + +g  + ++G+ ++ r  alq    
       CDO72291.1 433 VLLDVGTMPGPTSIYHLWKAFDiNSNVGGACGEIVAlkgkyMrNLINPLVAAQNFEYKMSNILDKPLESIFGYITVLPGAFSAYRYIALQndqT 526
                      788888888999999888899977899999999997333223455677777788889*********************************7750 PP

  Glyco_trans_2_3  87 vg....................gwdgdessvsEDfdmglrlqrkG...yrvrfvpeslvkekspltlraalrQrkRwayGc.....el...ekl 149
                       g                    +    +  ++ED  ++  l +k    +++++v ++   + +p+ +   + Qr+Rw+ G       +   + +
       CDO72291.1 527 -GegplqkyflgekmhgagadiFTA--NMYLAEDRILCWELVSKRggaWILHYVKSAYAVTDVPDQVPELISQRRRWLNGSffaaiHStvkF-H 616
                      .255555555555556676663444..689***********766558999999999999*********************766544114432.2 PP

  Glyco_trans_2_3 150 illvrllgylgsllwsa.lplhlallllfslla...l 182
                      +++ +++ +l++++ +  l+  +++l+ ++++    +
       CDO72291.1 617 YIYRSSHSWLRKFWIHVeLLYQCFNLFFSWFALgnyF 653
                      2244444555555433323333333333332222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6796.34
//
Query:       CDO72292.1  [L=600]
Description: hypothetical protein BN946_scf184970.g144 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-81  272.9  33.5    1.5e-76  257.9  15.3    3.0  2  AA_permease    Amino acid permease
    1.2e-31  110.0  17.1    2.5e-31  109.0  17.1    1.5  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.16   11.7   0.1       0.41   10.4   0.1    1.6  1  NCE101         Non-classical export protein 1
        1.4    9.4   6.2        1.7    9.1   0.6    3.0  3  DUF4231        Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.9  15.3   3.3e-80   1.5e-76       4     331 ..       1     322 [.       1     336 [. 0.92
   2 !   17.3  10.2   3.1e-07    0.0014     337     473 ..     390     562 ..     382     567 .. 0.80

  Alignments for each domain:
  == domain 1  score: 257.9 bits;  conditional E-value: 3.3e-80
  AA_permease   4 vialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasili 101
                  +i++ggviGtglf+g++ +++++Gp+ga+l+y ++g+v+++  +s+ge+  + p++gg   +a  f++p+lGf+ G+  +++w ++  l++taa+ ++
   CDO72292.1   1 MISIGGVIGTGLFLGSADAIRNGGPVGAFLGYSIVGTVVYCLCVSVGEMIAYLPNVGGVVGLADLFVDPALGFSLGWAAWYNWSVT--LQITAAAVVL 96 
                  8**********************************************************************************875..7999****** PP

  AA_permease 102 qfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfa.keeega 197
                  ++w     +p   + + +fl++ ++in +  ++yge+ef l+++k+ +i+  i++g  +  g+  ++g+ gf++++++ +   ++l      + ++g+
   CDO72292.1  97 GYWDPKARMP-VAAASGLFLIIATAINCFPSRYYGEVEFYLSCMKVCTIVFIILIGLLVDLGAS-SQGPiGFKYWKEQPF-SPQYL----GiDGAKGQ 187
                  **********.555555*********************************99999966665555.777779********9.33444....3558**** PP

  AA_permease 198 fknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlaplina 294
                  f++f +v+++++f+f G e  +i+agEv d  +++P+a ++v irit+fY++++l++gllvp ++++l+ +  s   spfvi+++ ++ +vl++l+na
   CDO72292.1 188 FLGFWAVIMQASFSFFGSEVPGIAAGEVIDATRNVPRALRKVWIRITLFYLGGVLCAGLLVPATNPDLVGEDESSrHSPFVIAFNLAKFKVLPDLVNA 285
                  ********************************************************************987666679********************* PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkv 331
                  +il++a+s+a s +y++sR l++la++g+aP++++ +
   CDO72292.1 286 CILVSAWSAAASDIYISSRFLFFLARRGHAPSFFGHL 322
                  *******************************887654 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3.1e-07
  AA_permease 337 PlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalky.....qgrsieelgf...........kaallplgvilv 418
                  Pl+++l+s+ +++l +l +++ +a   +f++l+a++ ++ l  w  ++++y+r+ +   y     + +s e+++            +a+++p++++++
   CDO72292.1 390 PLASVLFSASVGFLTFLSSAAGSA-SAAFQWLVAVASVASLQSWAGMLFTYIRWHQGTAYvenmsRDMSPEDAQTvreqikvikknRAPCQPYLAYYA 486
                  9***************98888888.99****************************9877632222222222222112222222223799********* PP

  AA_permease 419 laaliiillilalyay....................ltvkkgpkdwgaasfa.aaylivllfliilvgvklhvknk 473
                  + ++i++l++++++ +                     ++ + +k  +++s++ +ay+ ++ fl++ +g+kl+++++
   CDO72292.1 487 FSLCILVLMTNGWAVFvhsgwrigkvlgpdvmgdavPQYDAAEKETNPVSQFlSAYVPIPFFLLLTFGYKLIKQTR 562
                  *********************************9987778888888877655278***************999876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0  17.1   5.5e-35   2.5e-31       9     370 ..       2     440 ..       1     503 [. 0.84

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 5.5e-35
  AA_permease_2   9 lvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++ig vig+g f  +  ++ +ggp+ ++ +  +v+ ++++++    E+ ++ lp+ gG+++ +  +  + ++f  +w++w+ ++++l    + aa+
     CDO72292.1   2 ISIGGVIGTGLFLGSadAIRNGGPVGAFLGYSIVGTVVYCLCVSVGEMiAY-LPNVGGVVGLADLFVDPALGFSLGWAAWYNWSVTL---QITAAA 93 
                    89***********99**9999***966555555555558899999999899.*********************************99...566677 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpn.gwpgv...... 190
                      l+ ++p+    + ++     ++li+ ++in++  + ++ + ++l  +k+  +++++i++gl++   g +s+ +   +++  + ++p++      
     CDO72292.1  94 VVLGYWDPK---ARMPVAAASGLFLIIATAINCFPSRYYGEVEFYLSCMKV-CTIVFIILIGLLVD-LGASSQGPIGFKYWKEQpFSPQYlgidga 184
                    777779998...5889999999*****************************.7*********9995.44444444555566666666654444555 PP

  AA_permease_2 191 .......llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddei.....anlsnlgsvaalffeavggkvv 272
                           +++++++ +sf G e+    + e  + +++vp+a+  +++ ++++yl+  + +   vp  +      +++s+ +s++ + f+ +  kv+
     CDO72292.1 185 kgqflgfWAVIMQASFSFFGSEVPGIAAGEviDATRNVPRALRKVWIRITLFYLGGVLCAGLLVPATNPdlvgeDESSR-HSPFVIAFNLAKFKVL 279
                    6666666889999*****************744449*******************966666666666666667655555.889********99*** PP

  AA_permease_2 273 aiivvilialsllgaintavigssrvlealardgvlPrffakv..................................................... 315
                      +v+++i +s++ a+ + +++ssr+l+ lar g  P+ff +                                                      
     CDO72292.1 280 PDLVNACILVSAWSAAASDIYISSRFLFFLARRGHAPSFFGHLfklndkrpvsaaaadnmvdvsdggtdlenernssdfgeqssshhhstsvedgl 375
                    ***********************************************************************9888888888887666666666666 PP

  AA_permease_2 316 .....nkfgs.......piraiiltaivslillllfllas.saaynfllsvsslgliisyllliigal 370
                         +           p++++ ++a v ++ +l ++++s saa+++l++v+s++++ s++ ++++++
     CDO72292.1 376 pdhpsD---EkqssyvlPLASVLFSASVGFLTFLSSAAGSaSAAFQWLVAVASVASLQSWAGMLFTYI 440
                    666652...044458889**********9888877777779***************999987776655 PP

>> NCE101  Non-classical export protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   9.2e-05      0.41       6      23 ..      66      83 ..      64      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.2e-05
      NCE101  6 flDPlLaifiGvaaYyly 23
                f+DP L++++G aa+y +
  CDO72292.1 66 FVDPALGFSLGWAAWYNW 83
                79**************77 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       2.2   9.7e+03      48      61 ..      80      93 ..      34     119 .. 0.62
   2 ?    2.1   0.0     0.059   2.6e+02      20      61 ..     139     204 ..     131     228 .. 0.85
   3 ?    9.1   0.6   0.00039       1.7      14      83 ..     383     452 ..     378     456 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.2
     DUF4231 48 iltallsalvaila 61
                + ++ + + ++  a
  CDO72292.1 80 WYNWSVTLQITAAA 93
                33333222222222 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.059
     DUF4231  20 lrlitivlgallpilvs........................sklgagvsvlkiltallsalvaila 61 
                 ++++tiv+ +l+ +lv                         +++ga++++l + ++++ a+ ++  
  CDO72292.1 139 MKVCTIVFIILIGLLVDlgassqgpigfkywkeqpfspqylGIDGAKGQFLGFWAVIMQASFSFFG 204
                 688999999999999999999999999999999999999998889999999999999998888765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00039
     DUF4231  14 krrfrllrlitivlgallpilvs..sklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsL 83 
                 k++ ++l l++++++a + +l    s  g+ + ++++l+a++s+++  l+++ +      rW++  + +E++
  CDO72292.1 383 KQSSYVLPLASVLFSASVGFLTFlsSAAGSASAAFQWLVAVASVAS--LQSWAGMLFTYIRWHQGTAYVENM 452
                 6677889999999999888888766678888889999988888766..566666666666688887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4279.26
//
Query:       CDO72293.1  [L=465]
Description: hypothetical protein BN946_scf184970.g145 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        3.1    7.9   8.1        8.2    6.5   0.6    3.2  3  Phage_holin_3_7  Putative 3TM holin, Phage_holin_3


Domain annotation for each model (and alignments):
>> Phage_holin_3_7  Putative 3TM holin, Phage_holin_3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.48   8.6e+03      58      71 ..       9      22 ..       7      22 .. 0.75
   2 ?    4.8   0.2    0.0016        29      50      74 ..      64      90 ..      47     110 .. 0.70
   3 ?    6.5   0.6   0.00046       8.2       9      48 ..     209     248 ..     203     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.48
  Phage_holin_3_7 58 vlinvvLlvlvlra 71
                     +l n++L++lv++a
       CDO72293.1  9 TLQNATLAALVCAA 22
                     56788999999875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0016
  Phage_holin_3_7 50 yre..vdlaevlinvvLlvlvlrarGN 74
                     +++   ++a++l+++ L+++ +  +GN
       CDO72293.1 64 RDSvpSAWASTLLTASLVIAAMVQKGN 90
                     444446677777777777777777777 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.00046
  Phage_holin_3_7   9 iavrLltyrRngarhrrgiswlAyllivasgsvairillg 48 
                      ++  L  +r ++ +h++++ w+ +ll  +  ++ + ++l+
       CDO72293.1 209 LIFFLARFRARDINHKYMVVWVFWLLFSLGTTLCLTVVLA 248
                      5666888*******************98888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3271.63
//
Query:       CDO72294.1  [L=444]
Description: hypothetical protein BN946_scf184970.g146 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-27   93.9  60.2    8.9e-21   74.2  29.8    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2  29.8     5e-25   8.9e-21       2     266 ..      62     307 ..      61     311 .. 0.85
   2 !   30.4  24.8     1e-11   1.8e-07      26     172 ..     284     432 ..     283     440 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 5e-25
       MFS_1   2 llaaflsalarsilgpalplalaed.lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGl 97 
                 +la+f+s+ + + +g++ +++  ++  ++ ps+i ++ +l  ++++++  ++Grl d +G+r +ll+g l++++g ++++ ++++++ ++l+  vl ++
  CDO72294.1  62 FLALFCSFGQLNSFGTFQTWYAEHQlSHLPPSTIAWIGSLQLWVFFFSGAFVGRLFDAHGPRLILLFGSLILVFG-TMMTsISAQYYqYVLAQGVLVAV 159
                 899***************9744444366***********************************************.777746699999*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 g g++f  ++a+i+  f+   r+ a+g++ ag++lG ++ p+    l + +g+ ++  i +++sl+++ ++++ ++ + p+++ ++           p+
  CDO72294.1 160 GIGTVFYPSLAAISTHFKN-LRSTALGIAIAGSGLGGVVYPIMYQQLFTRVGFAWTVRISGFISLVLCGVAIATITSRLPKPQYDA-----------PW 246
                 ******************9.***********************************************6655555555555555555...........55 PP

       MFS_1 197 vpawkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagr 266
                 ++  k l+  p+ + ++++ +l++fg+++ ++++  y  +++g+s  ++++++ ++ +++        ++gr
  CDO72294.1 247 FD-AKVLRDTPFRL-VILGGILISFGLFIPSFYIVDY-STDRGISpqTAFYVLSVMNAGG--------IVGR 307
                 55.88888888776.9999999999************.*******443344444444444........4444 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1e-11
       MFS_1  26 dlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 d gisp+++  +l++  +g +v+ l  + l+d +Gr  +l+ +++l +l++ll++ fa+sl +++++ v+ G+++ga++++++  +++++  +e g  i
  CDO72294.1 284 DRGISPQTAFYVLSVMNAGGIVGRLAPACLADVLGRFNILVPCAFLAGLSVLLFWtFAHSLVAIMLFAVVYGFFSGAFNALVIPCVVQISDVREYGTRI 382
                 56899999999***************************************666666877777************************************* PP

       MFS_1 124 gllsagfslGailgpllggllasslgWrav.fyilaivsllafvlfllll 172
                 g+l++ +s+ a++g +++g+++ ++g +++ + +l +++++a+ lf+l+ 
  CDO72294.1 383 GVLYSIISFPALCGGPVAGAMLKAGGGSYLgMTMLSGATIIAGSLFMLWA 432
                 **********************8887444424444555555555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3078.41
//
Query:       CDO72295.1  [L=941]
Description: Glycoside Hydrolase Family 35 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-62  211.9   1.4    2.5e-62  211.3   1.4    1.1  1  Glyco_hydro_35  Glycosyl hydrolases family 35
    4.3e-50  169.0   0.1    1.6e-24   86.7   0.0    2.8  2  BetaGal_dom4_5  Beta-galactosidase jelly roll domain
    7.5e-34  117.1   0.1    1.3e-33  116.4   0.1    1.3  1  BetaGal_dom2    Beta-galactosidase, domain 2
    7.1e-20   70.4   0.1    3.1e-19   68.3   0.1    2.1  2  BetaGal_dom3    Beta-galactosidase, domain 3
      0.004   16.5   0.1      0.021   14.2   0.1    1.9  1  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_35  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.3   1.4     7e-66   2.5e-62      42     311 ..      57     339 ..      54     343 .. 0.90

  Alignments for each domain:
  == domain 1  score: 211.3 bits;  conditional E-value: 7e-66
                     EEE--HHHH-SCTTB---SGGG-CHHHHHHHHHCT-EEEEEEES---TTBGGGG--GGGGGSTTS-TTSS-HHHHHHCHHHHHHHHHHHHHCBGG CS
  Glyco_hydro_35  42 etYveWnlhepkegkydfeGaldlekFlklaqeagLyvilRpGpYicaEwdaGGlpaWllkkkeiklRssdeafleavekyleailkkvkklllt 136
                      +Y++W+l +p++g +df+  + l+  +++a+ ag++v+lRpGpYi+aE+ aGGl++W+++  e+ +R++++++ +a++ y+++i++  k+ ++t
      CDO72295.1  57 YIYIHWGLTNPAPGVFDFDDWRALQPIFDAAKLAGIFVVLRPGPYINAETTAGGLALWSTSLVEGAARTNSSTWNAAYQPYVSKIIEAAKPNQVT 151
                     58********************************************************************************************* PP

                     GTSSEEEEEESSSGG.GT---HHHHHHHHHHHCCCT-SSCBEEECESTTTCCCTTSSTTT.SCEEEEEECTTS.T..........HHHHHHHHHH CS
  Glyco_hydro_35 137 nGGpiilvQvEneYg.skavdkaylralakalkeklaekallftadvpseevaekgtlpeedilatvgfgsdaka..........keafkllkef 220
                     +GGp++l+Q++neY+ +   +++y + l+++++++++   l+++  + ++++ +++++p+  ++  + ++ + +           ++  + + e+
      CDO72295.1 152 EGGPMLLLQIDNEYSqTPIGNAEYFADLEEQYRSNGVVVPLTYNDPGEKMQFVNGTGAPD--LYGLDFYPNNFNCspgafwnpvpTNFHQYHLET 244
                     ***************766678899999999999988887777777788888999989999..665544433322244556777854445556999 PP

                     -TTS--EEEEEESS---BTTS--HHHHHHHCCHHHHHHHCCC......SEEEEEECE--B-GCC-B-CCTT.SB--TT-SB-TTS---HHHHHHH CS
  Glyco_hydro_35 221 spekPlvvsefwtgwfdewgekkaarsaeelaeevervlakn.....issvnlYMihGGTnfGflaganflgtsYdydApldEagnltpkylelk 310
                     +p++P  ++ef++g  d wg++ ++r++e++  ++e+v++kn     ++++++YM++GGTn+G +a++ ++ tsYdy  +++E++ l +ky e+k
      CDO72295.1 245 APDRPFYLPEFQGGSHDYWGGPGYERCRERVGPDFEDVYYKNnwasnAKMQSVYMFYGGTNWGGIAYPGAY-TSYDYSGAIKETRLLWEKYDEMK 338
                     ******************************************9**999******************99999.**********************9 PP

                     H CS
  Glyco_hydro_35 311 e 311
                     +
      CDO72295.1 339 R 339
                     7 PP

>> BetaGal_dom4_5  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1   7.8e-26   2.8e-22       1     114 []     668     784 ..     668     784 .. 0.93
   2 !   86.7   0.0   4.4e-28   1.6e-24       1     101 [.     836     940 ..     836     941 .] 0.93

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 7.8e-26
  BetaGal_dom4_5   1 Yderqgwhlpgkttsnnskwplt....vlyssdygfhagvrlyrgtfdldlpsgldvslsltlsggtafrvsvwlNGyqlgsyv..phigpqvtF 89 
                     Yd++  w+ +++t++n + +p+     vly++dyg+++++ l+rg+f    ++g +++++lt++ggtaf++svwlN  +l ++   +  g++ +F
      CDO72295.1 668 YDDS-SWVIANHTSTNITIPPAFgdgrVLYGCDYGYCENIILWRGHF---DATGAEIGANLTINGGTAFAASVWLNNVFLKTVSdfSAAGESNSF 758
                     9***.*********99887775599**********************...9999****************************9899666666666 PP

  BetaGal_dom4_5  90 .pvpegilnyngenvlavlvdamged 114
                       +p+ +l+  ++nvl++++d+mg+d
      CDO72295.1 759 fDFPHSALRLGKDNVLTIVLDHMGND 784
                     6**********************986 PP

  == domain 2  score: 86.7 bits;  conditional E-value: 4.4e-28
  BetaGal_dom4_5   1 Yderqgwhlpgkttsnnskwpltvlyssdygfhagvrlyrgtfdldlpsgldvslsltl.....sggtafrvsvwlNGyqlgsyvphigpqvtFp 90 
                     Y+er+gwhlpg++  ++++ +++ l+s+    +agv ++ +tf+ld+p++ld+ ls+++     ++g+ +r+  ++NG+ +g+ v+++gpq +Fp
      CDO72295.1 836 YAERAGWHLPGFPA-KSPQFTARELSSGLPDGRAGVGFFITTFKLDIPEELDAMLSFEFdggaqNAGAPYRAIFFVNGWHFGKRVGNVGPQARFP 929
                     9************9.44777766788888889*******************************999***************************** PP

  BetaGal_dom4_5  91 vpegilnynge 101
                     vp+gil+y+g+
      CDO72295.1 930 VPPGILDYRGT 940
                     *********97 PP

>> BetaGal_dom2  Beta-galactosidase, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.1   3.5e-37   1.3e-33      18     173 ..     379     537 ..     371     546 .. 0.80

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 3.5e-37
                   TTEEEEEEE-.STT-EEEEEEESSTT---EEEE-EEEEETT.EEEEE-TTSS-EEEESS-EEEEEEEEEET.TEEEEEESSEEEEEEEETTEEEEEE CS
  BetaGal_dom2  18 saiavtelrnpdtkasFyvvrhadysslestsfklkvnTsaaGnltiPqlggsltLngrdSKilVtDYdvG.gktLlYStAEvlTwkklddktvlvl 113
                   ++ ++t lrnpdt+++F +vr+ + +s ++ sfkl++++s +G+l+iP ++  ++Lngr+SK++V+DY++G + t+lYStA v+   k++ ++vl +
    CDO72295.1 379 DKAFATYLRNPDTGTGFVIVRQLNGTSIDNISFKLTIPSS-HGQLEIPAYAPAISLNGRQSKLIVADYTFGsSGTVLYSTASVFFAGKIGARDVLFV 474
                   567899**********************************.6*****************************558*********************** PP

                   EE-TT-EEEEEEE-....SS-..EEEEESTEEEE-SSEEEEEEE--SS.-EEEEE.T.TEEEEEE CS
  BetaGal_dom2 114 Yggegetgefalkg....kskgsssvvegskikskngalvlnwytqsegrtvvkl.gngllvyll 173
                   Yg++++++e++l         +++s+  +s ++s    ++++   q+ ++++v+l +++++++l 
    CDO72295.1 475 YGDSDQSHEISLILsgraG--KRASSKRVSYTHSDGAFTTISISSQRGEKRLVTLwESSTQLVLF 537
                   *********9987644431..22222222334444445888878888889999885333444443 PP

>> BetaGal_dom3  Beta-galactosidase, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.76   2.7e+03      34      52 ..     470     489 ..     466     506 .. 0.77
   2 !   68.3   0.1   8.7e-23   3.1e-19       1      75 [.     547     633 ..     547     635 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.76
  BetaGal_dom3  34 stLaltGDlnatttlevi.a 52 
                   ++L + GD++++ ++  i  
    CDO72295.1 470 DVLFVYGDSDQSHEISLIlS 489
                   578899******99998844 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 8.7e-23
  BetaGal_dom3   1 WvpdltssPaes............enessviVkGpYLvRsasi..sgstLaltGDlnatttleviapssvktltwNgkklettktkyGs 75 
                   W+p++ ++P+++            +n+ sv+V GpYLvR+a++   g+tLa++GDln +++l+viap+svkt+twNg ++ ++   +G 
    CDO72295.1 547 WAPAV-RAPTADtisgletfwqfgTNT-SVLVGGPYLVRNATLqdGGRTLAIRGDLNGSVPLTVIAPESVKTVTWNGARVGVQGAGTGV 633
                   88888.777777788899999995555.***************534459*******************************998777775 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   5.9e-06     0.021      32     153 ..      60     184 ..      51     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.9e-06
                     T-HHHH-SBTTB---HH...HHHHHHHHHCTT-EEEEE-STTS--HHHHHH-GGGS-B-TTS-B--SSSS----TT-HHHHHHHHHHHHHH.HHH CS
  Glyco_hydro_42  32 faWaklePeegkydFew...LdevldllekagikviLatptaapPaWlvkkyPeilavdadgskrkfgsrqhiclsspvyrekvakiveal.aer 122
                     + W  ++P  g +dF     L+ ++d ++ agi v+L+++    P   +++    la   + s  + ++r + ++ + +y+ +v ki+ea   ++
      CDO72295.1  60 IHWGLTNPAPGVFDFDDwraLQPIFDAAKLAGIFVVLRPG----PYINAETTAGGLAL-WSTSLVEGAARTNSSTWNAAYQPYVSKIIEAAkPNQ 149
                     5799**********974488******************98....55555555555654.35567778899999999*************995578 PP

                     HTT-TTEEEEE-SSSTTTT....S--SHHHHHHHH CS
  Glyco_hydro_42 123 YkdhpavilwhidnEygch....ecycetceeaFr 153
                      ++ + ++l +idnEy+++    + y  + ee++r
      CDO72295.1 150 VTEGGPMLLLQIDNEYSQTpignAEYFADLEEQYR 184
                     999999**********9988888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6709.73
//
Query:       CDO72296.1  [L=222]
Description: hypothetical protein BN946_scf184970.g148 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-53  179.4   0.2    6.3e-53  179.1   0.2    1.0  1  adh_short     short chain dehydrogenase
    3.9e-44  151.0   0.1    4.5e-44  150.8   0.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      3e-15   56.6   0.5    4.4e-15   56.0   0.5    1.2  1  KR            KR domain
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.38   10.8   0.1    1.9  1  SASP          Small, acid-soluble spore proteins, alpha/beta 


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.2   1.4e-56   6.3e-53       2     189 ..       7     198 ..       6     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 1.4e-56
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 v+++tGa++GIGr ia +lak+G ++ +  + rs++kle++a+e+++e g +++ + +Dv+++e+v++lv+++v++lg+l+++++NAGi+ ++  +e+s
  CDO72296.1   7 VAIITGAAEGIGRGIALRLAKDGLDLGLfdLPRSQQKLEQLAEEIRKEfGVRVVNVYGDVSKEEDVKRLVDTVVQELGSLWAMIANAGISVNRVLHETS 105
                 89************************9966779****************************************************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +e+ ++vi+vN++g+f   + ++ +++ ++++GrIv  sS+agk+++ag+++Ys +K+a++g+t+s+a ++ ++gi+vn+ aPG++dT+++  
  CDO72296.1 106 AEDLDKVINVNFKGTFFSYKYAAIQLIkQGKGGRIVGASSIAGKKGMAGQTVYSGTKFAIRGMTQSAAIDYGKYGITVNSYAPGVIDTPLMGY 198
                 ****************9999888777758899********************************************************99865 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.1     1e-47   4.5e-44       1     186 [.      12     203 ..      12     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 1e-47
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea...kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Gaa+gIGr+iA +la+ G ++ l dl +++   ++ +ee+ +e+g +v  +  DV++ee+v++lv++vv+++g+l  ++ nagi+ +    ++ets 
    CDO72296.1  12 GAAEGIGRGIALRLAKDGLDLGLFDLPRSQqklEQLAEEIRKEFGVRVvnVYGDVSKEEDVKRLVDTVVQELGSLWAMIANAGISVN--RVLHETSA 106
                   9*************************9988434455666666666664699************************************..99****** PP

                   HHHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   e++d++++vn++++f   k+a+  l+k+g  g+iv  ss++++++++++++y+ +K a+ ++t+++A ++g++gi+vN+ +pg+i+T+++  +++ +
    CDO72296.1 107 EDLDKVINVNFKGTFFSYKYAAIqLIKQGkgGRIVGASSIAGKKGMAGQTVYSGTKFAIRGMTQSAAIDYGKYGITVNSYAPGVIDTPLMGYLDEYH 203
                   *******************988778888888*********************************************************998887655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.5   9.8e-19   4.4e-15       4     152 ..       9     161 ..       7     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 9.8e-19
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 +itG++ g+G+ +a  la++g    l  l Rs++   + ++l +e+++  g++v  v  Dvs++++v++l++++ +e +++   i  Ag++ ++ l e+
  CDO72296.1   9 IITGAAEGIGRGIALRLAKDGlDLGLFDLPRSQQ---KLEQLAEEIRKEfGVRVVNVYGDVSKEEDVKRLVDTVVQELGSLWAMIANAGISVNRVLHET 104
                 8********************8889999999944...4445667777666************************************************* PP

                 -HHHHHHHHTTTTHHHH.....HHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR 101 taedleqvlapKvkGaw.....nLhelledesldffvlfSSiagllgsagqanYaaa 152
                 +aedl++v++  +kG+         +l+++ +   +v  SSiag  g+agq+ Y+ +
  CDO72296.1 105 SAEDLDKVINVNFKGTFfsykyAAIQLIKQGKGGRIVGASSIAGKKGMAGQTVYSGT 161
                 ***************962222245678888999*********************865 PP

>> SASP  Small, acid-soluble spore proteins, alpha/beta type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   8.6e-05      0.38       6      29 ..      38      60 ..      36      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.6e-05
                GGGHHHHHHHHHHHHHHHT---ST CS
        SASP  6 peakeaLdqlKyEvAaElGvslgk 29
                p ++++L+ql  E+ +E+Gv    
  CDO72296.1 38 PRSQQKLEQLAEEIRKEFGVRV-V 60
                899****************986.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1553.39
//
Query:       CDO72297.1  [L=658]
Description: hypothetical protein BN946_scf184970.g149 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-64  217.7   0.0    5.4e-62  210.0   0.0    2.0  2  p450      Cytochrome P450
  ------ inclusion threshold ------
      0.047   14.0   3.3      0.055   13.8   1.6    1.9  2  DUF2499   Protein of unknown function (DUF2499)


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0   0.00064       5.7      19      62 ..     110     152 ..      94     176 .. 0.82
   2 !  210.0   0.0     6e-66   5.4e-62      96     447 ..     241     616 ..     213     625 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00064
                 TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTS CS
        p450  19 keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikk 62 
                 + ++h+ l + +++yg +++++++ ++ ++ ++pe++k  l ++
  CDO72297.1 110 RYMIHS-LLEWAEEYGTVYNFRVMFEDRIMTTEPEYIKMMLATD 152
                 567888.888999*************************999876 PP

  == domain 2  score: 210.0 bits;  conditional E-value: 6e-66
                 HHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH................HHHHHHHH CS
        p450  96 kklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek................lselvkav 177
                 + +R+ +t+ ++s   + +  +++++ ae  ++k+ ++  +   +d ++++s+++ld+ ++ lFg+ + +l+ +                 + + v+a+
  CDO72297.1 241 RFHRT-MTRPFFSR-DRiTHFDIFDRHAEHALDKMADRLRQGIPVDWQDVVSRFTLDSATEFLFGKDVRSLDAPLpypstvapptpprvhpADRCVRAF 337
                 45555.55566666.56689*********************99************************************************889***** PP

                 HHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC...SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHH CS
        p450 178 eelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa...kksrrdfldalllakkekkgesklsdeelaatvlellfa 273
                 e+ ++ + + + ++l+  pl+ ++ ++ ++ l+ + + ++ ++++ ++ r e+++     ++s+ +  d+  l + +  +  + + ++++ ++l++l+a
  CDO72297.1 338 EAALEAT-SVRGRFLQSWPLFEFWGDRVKKYLRTIDELVDPIVENALKSRAEKINAGivsNESKEQVRDDETLLE-HLAKF-TNDPKDIKDEILNILIA 433
                 ***9988.6799*******99999999999999998888888888888888888888999445555555544443.11111.33458************ PP

                 HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.......EEE-TT-EEEE CS
        p450 274 GvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.......ylipkGteviv 365
                 G dTt+ tl++a y La++P+v ++lr E+++v+g + +pty+++ +++y++a+i+E+LRl p+vp   +R+  ++++ +        y ip  t+++ 
  CDO72297.1 434 GRDTTACTLTFAVYALAEHPDVLKRLRTEVMSVVGPSGRPTYEHVREMKYMRAFINEVLRLWPPVP-VNSRCSIEPMTWKSikpgqpdYYIPPRTRCLY 531
                 **********************************99999***************************.889*****9987433334566*********** PP

                 EHHHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEE CS
        p450 366 nlyalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppil 447
                 ++  +hr+++++ p++ +Fdp+RFld+++       ++f flPF aGpR+C+G+++A+ e++ +l++lLq+F+    ++++ p  +
  CDO72297.1 532 SVLIMHRRKDLWgPDAMNFDPDRFLDDRVqkyLV-TNPFIFLPFNAGPRICLGQQFAYNEVSFMLVRLLQRFSSIALRQEAHPAAM 616
                 *****************************87543.89***********************************98877776666555 PP

>> DUF2499  Protein of unknown function (DUF2499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.6   6.1e-06     0.055       2      47 ..      44      89 ..      43      93 .. 0.94
   2 ?   -2.6   0.0      0.75   6.7e+03       9      28 ..     113     130 ..     106     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.1e-06
     DUF2499  2 LSlptWiiHissvlEwllAilliwrygevsgrkelrvlalamlPal 47
                +SlptW++ ++ +l w +A + ++++ ++++ ++ r+ +  m P  
  CDO72297.1 44 ISLPTWLVALAYLLSWPIAFTALVQWHDYTNARRARASGAVMPPEI 89
                69***********************************999999976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.75
     DUF2499   9 iHissvlEwllAilliwryg 28 
                 i   s+lEw+     ++++ 
  CDO72297.1 113 I--HSLLEWAEEYGTVYNFR 130
                 4..59999998777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4755.69
//
Query:       CDO72298.1  [L=285]
Description: hypothetical protein BN946_scf184970.g150 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2059.45
//
Query:       CDO72299.1  [L=1084]
Description: hypothetical protein BN946_scf184970.g151 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0049   16.5   0.0      0.012   15.2   0.0    1.6  1  DUF4218   Domain of unknown function (DUF4218)


Domain annotation for each model (and alignments):
>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.7e-07     0.012      37      90 ..     797     853 ..     784     876 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.7e-07
     DUF4218  37 mvHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrn...karpeGsiaEayvae 90 
                   H+ +Hlv  ++  GPv++ + y +eR+   l k+ +n     ++e +++ + +++
  CDO72299.1 797 YFHILIHLVIFIRRFGPVYAWWAYMFERFNGWLAKVNHNghkGGELEATMMRSWIKN 853
                 56999999999*****************87777665544111344555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 7377.94
//
Query:       CDO72300.1  [L=499]
Description: hypothetical protein BN946_scf184970.g152 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.049   13.0   2.2       0.13   11.6   2.2    1.7  1  DUF4407         Domain of unknown function (DUF4407)
      0.062   13.7   0.8       0.17   12.3   0.8    1.7  1  CLZ             C-terminal leucine zipper domain of cyclic nu
       0.13   10.9   0.1       0.18   10.4   0.1    1.1  1  Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-
       0.45   10.8   1.9       0.49   10.7   0.4    1.8  2  Spc24           Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   2.9e-05      0.13     129     202 ..      24     102 ..       3     128 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
     DUF4407 129 aa......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake...........kkaqldaaqaelael 202
                 +a      l++ la+l + +++l+a++d++++++d+l++e+++  +++ +++  +  G+  a+ +           k            ++
  CDO72300.1  24 KAldgvktLDESLARLIRMTQDLEATVDSLQTHVDCLENELAEMGQNEHSDQRRAATGEVVACGQesgaqatrpesK------------KA 102
                 2255555599999999999***********************88888888887888888888877444333322221............22 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   3.8e-05      0.17      14      59 ..      31      76 ..      26      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
         CLZ 14 lLDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyessqr 59
                 LDe+ a      ++le  v++L+++++ L++ la + ++  s qr
  CDO72300.1 31 TLDESLARLIRMTQDLEATVDSLQTHVDCLENELAEMGQNEHSDQR 76
                5999998999999**********************99887777776 PP

>> Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   4.1e-05      0.18     292     400 ..      20     129 ..       4     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.1e-05
                     HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GG.TSS-EE-----EE----SS-SSSS-SS---SSS...-HHHHHHT-S CS
  Ceramidase_alk 292 efestkiigerqfekakellksakeevsgkvksrhqyvdmskvevklk.ngtevktckaalGysfaagttdgpgafdftqgeteknplwklvrkl 385
                      ++s    g + ++++ + l + ++ ++ +v+s +++vd+ + e++   ++++    +aa G  +a g + g+ a++ +  + ++n+l +++rk+
      CDO72300.1  20 AVASKALDGVKTLDESLARLIRMTQDLEATVDSLQTHVDCLENELAEMgQNEHSDQRRAATGEVVACGQESGAQATRPESKKARDNALQDAIRKC 114
                     45666777777777777777778899*************9999988875677788899*******************9999999**********9 PP

                     S-S---HHHHHHTTT CS
  Ceramidase_alk 386 llakpskeqkecqap 400
                     l + +  +q++ + p
      CDO72300.1 115 LCSIMGIAQSSSELP 129
                     888776666666555 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00011      0.49       2      47 ..      32      77 ..      31     104 .. 0.86
   2 ?   -2.3   0.1       1.2   5.4e+03      21      43 ..     219     241 ..     205     253 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
       Spc24  2 ldnekfriakelsdleselesleselaelkeeleeleeeseekese 47
                ld+ + r++   +dle++++sl+++ + l++el+e+ +++++++++
  CDO72300.1 32 LDESLARLIRMTQDLEATVDSLQTHVDCLENELAEMGQNEHSDQRR 77
                788899999***************************9998884443 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
       Spc24  21 esleselaelkeeleeleeesee 43 
                 +s +s++ +  +e++ ++++ ++
  CDO72300.1 219 QSKTSQKGKSAKEIHLVKNKINN 241
                 45555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3607.74
//
Query:       CDO72301.1  [L=189]
Description: hypothetical protein BN946_scf184970.g153 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-30  103.5   0.0    8.6e-30  103.3   0.0    1.1  1  DSPc             Dual specificity phosphatase, catalytic doma
    4.6e-05   23.7   0.0    6.9e-05   23.1   0.0    1.2  1  Init_tRNA_PT     Rit1 DUSP-like domain
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.014   14.9   0.0    1.1  1  Y_phosphatase    Protein-tyrosine phosphatase
      0.035   14.2   0.0      0.045   13.9   0.0    1.2  1  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   1.9e-33   8.6e-30       1     132 [.      34     170 ..      34     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 1.9e-33
                 EEEEECCHHC.HHHHHHHTCSEEEEESSSSSEC.....ECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHH CS
        DSPc   1 lylgskstas.lallsklgitlvinvtkevpna.....nalkkseieklripvedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliia 93 
                 lylgs s++  ++ll+ ++i++ + v  + p+      +a++  + e  r+ + d+++++++++le +v+ id+  ++g++vlVHCq G+sRSa+++ia
  CDO72301.1  34 LYLGSFSAILdPSLLASHHIQALVQVL-DAPWLpsvdaHAAQGIKLESYRLDILDSSSADLRPHLETTVRWIDDHLRRGQNVLVHCQQGVSRSAAVVIA 131
                 7*********9*************999.666667888877788888899999999******************************************** PP

                 HHHHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHHH CS
        DSPc  94 YlmktknlslneayeflkerrpaispnagfirqLleyek 132
                 Yl++t+n+++++a++++k +r +i pn gf+r L ++ek
  CDO72301.1 132 YLIYTHNMTYDSAFDLVKRKRACIKPNSGFVRCLQDWEK 170
                 *************************************97 PP

>> Init_tRNA_PT  Rit1 DUSP-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.5e-08   6.9e-05      13      63 ..      89     137 ..      72     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.5e-08
  Init_tRNA_PT  13 gsknLrtalpkivdfvrkrlsedkkkkilvacetGkdlsvgvaLailcklf 63 
                   +s +Lr +l++ v ++ ++l++++  ++lv+c++G + s++v++a l+++ 
    CDO72301.1  89 SSADLRPHLETTVRWIDDHLRRGQ--NVLVHCQQGVSRSAAVVIAYLIYTH 137
                   5899*****************998..9********9999999999988776 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.2e-06     0.014     169     199 ..     110     140 ..      89     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-06
                    TSS-EEEECSSSSHHHHHHHHHHHHHHHHHH CS
  Y_phosphatase 169 ksgpvvVhCsaGvgRtgtfvaldillqqlea 199
                    + + v+VhC +Gv+R++++v + +++ +  +
     CDO72301.1 110 RGQNVLVHCQQGVSRSAAVVIAYLIYTHNMT 140
                    4579************988877766655444 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.045      91     155 ..      69     134 ..      49     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                      HHHHHHHTT-EEEEEEE-TTS---.HHHHHHHHHHHHTS.-TT-EEEEE-SSSSHHHHHHHHHHHHH CS
  PTPlike_phytase  91 erelaeelslrYaRipitdekape.eedfdalvsilkea.pektalvfnCqmGrgRTTtamviatLl 155
                      +++ a++ +l+ +R+ i d+ + +    +++ v+ + +   + + ++++Cq G+ R+  a+via+L+
       CDO72301.1  69 DAHAAQGIKLESYRLDILDSSSADlRPHLETTVRWIDDHlRRGQNVLVHCQQGVSRS-AAVVIAYLI 134
                      56778888999999999887766526799999*****99899**************7.567777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1310.09
//
Query:       CDO72302.1  [L=497]
Description: hypothetical protein BN946_scf184970.g154 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-48  164.2   0.0    2.8e-48  163.7   0.0    1.2  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    8.5e-32  109.1   0.7    2.2e-31  107.8   0.2    2.0  2  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    2.3e-08   33.8   0.0    5.7e-08   32.5   0.0    1.7  1  SLBB          SLBB domain
  ------ inclusion threshold ------
      0.064   13.3   0.3       0.12   12.5   0.3    1.3  1  DUF3568       Protein of unknown function (DUF3568)


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.0   6.2e-52   2.8e-48       1     149 [.      82     255 ..      82     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 6.2e-52
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk.......kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealeka 90 
                   +k++g++GrGGagfP+++K+++++k          +yl+vNa+E+EPg++kDr +mr +ph+++eG+ +a +a++a+ ++i++r+e +++++++++a
    CDO72302.1  82 IKDSGLRGRGGAGFPSGLKWSFMNKP-GwekdprpRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNANAAYIYIRGEFYQEASHVQQA 177
                   79*********************983.25788999************************************************************** PP

  Complex1_51K  91 laeakaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaa 149
                   ++ea++ag+           +d+ ++++ag+Y++Gee+aLiesl+g+ + pr kpp  advg+     +v NveT+a 
    CDO72302.1 178 INEAYKAGFlgkdacgtgysFDVYLHRGAGAYICGEETALIESLEGKqGKPRLKPPfpADVGLfgcptTVANVETVAV 255
                   *******************************************************99999999************985 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.89     4e+03      19      29 ..     258     268 ..     258     273 .. 0.85
   2 !  107.8   0.2   4.9e-35   2.2e-31       2      84 ..     371     453 ..     370     454 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.89
                  HHHHIIIIHHH CS
  NADH_4Fe-4S  19 tpCreGtkrll 29 
                  t Cr G ++ +
   CDO72302.1 258 TICRRGAPWFA 268
                  68******986 PP

  == domain 2  score: 107.8 bits;  conditional E-value: 4.9e-35
                  HHHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTHHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   2 varrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCalgdsaanpvlsalrkFreefea 84 
                  +++r+ +fy++esCG+CtpCreGt+++ ++++r+++g+g+++++d+l el+++++g+++Calgd+aa+p++ ++r+Fr e+e+
   CDO72302.1 371 AIARFSHFYKHESCGQCTPCREGTTWMMNIMDRFVEGRGHQREIDMLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVER 453
                  6789****************************************************************************986 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.3e-11   5.7e-08       2      57 ..     281     331 ..     280     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.3e-11
                 EEEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSSSS-- CS
        SLBB   2 VtVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGpmmgi 57 
                 ++++G+V++P+++e  + ++l+dlie+++G+ + ++        l  ++pgG++ ++
  CDO72302.1 281 YCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVRGGWD------NLlGIVPGGSSVPV 331
                 69*************************8888888873......788999****9987 PP

>> DUF3568  Protein of unknown function (DUF3568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   2.7e-05      0.12      15      53 ..     144     184 ..     142     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
     DUF3568  15 lasCaalvagaa.agagtvayvnGelkae...yeanlkkvykA 53 
                 + +C  lvag a  + +++ y++Ge+++e   ++  ++++ykA
  CDO72302.1 144 VEGC--LVAGRAmNANAAYIYIRGEFYQEashVQQAINEAYKA 184
                 6789..999999889************9955566667777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3603.17
//
Query:       CDO72303.1  [L=1075]
Description: hypothetical protein BN946_scf184970.g155 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-09   36.7   0.2    6.6e-09   35.8   0.2    1.5  1  DUF659    Protein of unknown function (DUF 659)
  ------ inclusion threshold ------
       0.78   10.6   5.4       0.14   13.0   0.4    2.3  2  DUF3306   Protein of unknown function (DUF3306)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   7.3e-13   6.6e-09      22     152 .]     457     587 ..     440     587 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7.3e-13
      DUF659  22 vkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdass.ekktaeylaelldkvieevgaenVvqvitdnasnykkagklleekypti 119
                  k++++  +++ ++i++Dg +++ + s+  + +++p++  ++ s ++ + e +t   + +++ + i e+g +    v++d++    ++   ++ ++pti
  CDO72303.1 457 SKQLEEVQKHDNLTITFDGNSTR-RDSIYFVHATTPHREHYFISGHVGTdEHHTVPWVKSKILQSIGEIGISRTAAVCSDSTVVTLNTRAEINLEIPTI 554
                 567778889999*******7765.578899999****9777777777765999999******************************************* PP

      DUF659 120 fwtpcaahclnlmledilklkwvkevlekakki 152
                 f    ++h+l+ ++ di+kl+++ e +  +kki
  CDO72303.1 555 FDLRDCCHQLHNIIADITKLSAFTEPISTMKKI 587
                 *******************************98 PP

>> DUF3306  Protein of unknown function (DUF3306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   1.6e-05      0.14      34      95 ..     354     416 ..     339     420 .. 0.77
   2 ?   -2.2   0.6      0.84   7.5e+03      20      41 ..     963     984 ..     940    1016 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
     DUF3306  34 eaaeaeesveaaapeaeeaeeaeaeeeletlpdvealtaesdfaaFlakgVsee..vkraALrk 95 
                 ++ ++++++++++p a+  +  ++ +e++++p +++l++e  + aF+a+gV+++   +raAL++
  CDO72303.1 354 QDCDSHQQTAHSTPSASL-SSVPSSSEPPAVPVPKKLKTEGTLDAFVAQGVKQKrtAQRAALQQ 416
                 444555666666666666.78889999************************9752278888875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.84
     DUF3306  20 pepaqseeeaaeeeeaaeaees 41 
                 ++p +++e+++++ +++++ +s
  CDO72303.1 963 ERPLATHEAESDSLSDESEDDS 984
                 2222222222222222211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 6974.58
//
Query:       CDO72304.1  [L=1188]
Description: hypothetical protein BN946_scf184977.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-18   65.7   0.0    5.2e-18   64.6   0.0    1.6  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   2.9e-22   5.2e-18      20      86 .]    1105    1171 ..    1090    1171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 2.9e-22
                     --HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHHH CS
  Dimer_Tnp_hAT   20 fdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqwl 86  
                      d+l wwke+ s++P++ ++ard L+ip++s+a Er Fs++ + +++ r sl+  +    +c++ w+
     CDO72304.1 1105 RDPLAWWKEHASSFPVIARMARDFLAIPATSVAVERLFSKSRHLCSDVRASLKAMTITEAMCVKYWI 1171
                     69****************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.51
# Mc/sec: 7024.72
//
Query:       CDO72305.1  [L=549]
Description: hypothetical protein BN946_scf184977.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.6e-132  441.4  36.3   4.4e-132  441.1  36.3    1.0  1  AA_permease    Amino acid permease
    1.4e-35  123.0  39.4    1.6e-35  122.7  39.4    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.1  36.3    5e-136  4.4e-132       1     473 [.      51     511 ..      51     515 .. 0.98

  Alignments for each domain:
  == domain 1  score: 441.1 bits;  conditional E-value: 5e-136
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +i++ggviGtglf+g++  l+++Gp+g+ll+y+ +g+v + vm+slge++ + p  gg  ++a+rf++p+++f++G+ny+++w + l++el aa+
   CDO72305.1  51 HIAMISIGGVIGTGLFLGTATSLQSGGPVGLLLGYAAVGTVCYSVMISLGEMVAYLPLPGGHIKLAERFVDPAFSFTMGWNYWYNWTIILPAELSAAA 148
                  899*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfa.kee 194
                   li++w  +++++   v++++ lvv+++in++g+ vyge efi+a+ik+i+i a+ii+gi+l  gg+pn+++ gfr+++++g      ++++ + + +
   CDO72305.1 149 VLINYW--TKEVN-NAVWITICLVVVVTINMFGAGVYGECEFIFASIKVITITALIILGIVLDLGGGPNHDRiGFRYWKQPGP-----FVQYHKiGGA 238
                  ******..*****.*********************************************************************.....5555445569 PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapl 291
                  +g+f+++++v+ +++f+f G+e+vai+agE+k+P++++Pkai++v +ri++fY++++++igllvp +d++l   + +a +spfvi+i+++g+s+l+++
   CDO72305.1 239 KGQFLGWFAVLTQAAFSFIGTEIVAIAAGEAKNPRRNLPKAIKRVYVRILLFYIGGVIIIGLLVPSTDPSLALTTSDAgKSPFVIAIRHAGISGLPSV 336
                  **********************************************************************998888888******************* PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                  ina++lt+a+s+a+s ly++sR+ly la+ g aPk+++k +k+g P+++++l++++s la++  s+ ++   vf ++++++ ++gl++w  i+++y+r
   CDO72305.1 337 INAALLTSAWSAASSDLYTSSRALYGLAMVGNAPKIFRKTTKNGLPIASLILCSAFSTLAYMGISSGSG--RVFGWFVNMTSIAGLMTWFGICVTYVR 432
                  *************************************************************77777777..*************************** PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  f k +k qg + + l++  al+p+ ++++l+++++i+ + ++  +l+     ++w +  f+  y+ + lf i+++g kl+++++
   CDO72305.1 433 FYKGFKMQGFDRKTLPYAHALQPYAAWYALFMCLLICFFSGWSVFLK-----GNWAVDQFVTNYIPLALFPILYIGAKLYFRTP 511
                  ***********************************************.....*****************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7  39.4   1.8e-39   1.6e-35       6     414 ..      52     487 ..      47     503 .. 0.83

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 1.8e-39
  AA_permease_2   6 afalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                     ++++ig vig+g f  +  ++ sggp+ +l +  av+ ++++v++ + E+ ++ lp  gG +  ++++  + + f+++w +w+ + + l++ ls+
     CDO72305.1  52 IAMISIGGVIGTGLFLGTatSLQSGGPVGLLLGYAAVGTVCYSVMISLGEMvAY-LPLPGGHIKLAERFVDPAFSFTMGWNYWYNWTIILPAELSA 146
                    6899***********998888999****9999999999999**********888.************************************99998 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt....ff 183
                    aa  + ++  +++++  w+t     ++l++v++in +g   ++   +i + +k+ ++++ liilg+++  ggg +              +    ++
     CDO72305.1 147 AAVLINYW-TKEVNNAVWIT-----ICLVVVVTINMFGAGVYGECEFIFASIKV-ITITALIILGIVLDLGGGPNHDrigfrywK----QpgpfVQ 231
                    88877775.56776654444.....5699999**********************.8************88777775577755431....2232222 PP

  AA_permease_2 184 pn...gwpg.v...llgllivlwsfdGfesaanvseevkk..kdvpkai..figllivlvlyllvniaflgvvpddei..anlsnlgsvaalffea 266
                     +   g +g +   +++l+++++sf+G e +a  + e+k+  +++pkai  +++ ++ + ++ ++ i +l  ++d ++  ++++   s++ +  + 
     CDO72305.1 232 YHkigGAKGqFlgwFAVLTQAAFSFIGTEIVAIAAGEAKNprRNLPKAIkrVYVRILLFYIGGVIIIGLLVPSTDPSLalTTSDAGKSPFVIAIRH 327
                    22333555433566889999*****************9998679*****6666666666666667777777777888765455555668******* PP

  AA_permease_2 267 vggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisy 362
                    +g + + +++++++  s++ a+ + +++ssr l+ la  g  P+ f+k+ k+g pi+++il   +s++ ++ ++ +s+  + + ++++s++ +  +
     CDO72305.1 328 AGISGLPSVINAALLTSAWSAASSDLYTSSRALYGLAMVGNAPKIFRKTTKNGLPIASLILCSAFSTLAYMGISSGSGRVFGWFVNMTSIAGLMTW 423
                    **********************************************************************9999888**************99999 PP

  AA_permease_2 363 llliigalilrkkrphl..kr..........pgkilvaiigalfllfllvalffppkgpatqss 414
                    + + ++++  +k  + +   r          p++++ a++++l+++f+  +  f   + a+ + 
     CDO72305.1 424 FGICVTYVRFYKGFKMQgfDRktlpyahalqPYAAWYALFMCLLICFFSGWSVFLKGNWAVDQF 487
                    9998888866665553333444687777777777889999999999998888887777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3532.72
//
Query:       CDO72306.1  [L=864]
Description: hypothetical protein BN946_scf184977.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5944.44
//
Query:       CDO72307.1  [L=846]
Description: Glycoside Hydrolase Family 74 / Carbohydrate-Binding Module Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-16   57.6   8.3    0.00021   20.2   0.0    6.4  7  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
    2.3e-13   49.9  10.4    2.3e-13   49.9  10.4    2.2  2  CBM_1           Fungal cellulose binding domain
    3.6e-10   38.3  32.4       0.35   11.0   0.0   10.2  9  BNR             BNR/Asp-box repeat
    1.3e-08   34.1   5.0      0.035   14.1   0.0    6.4  8  BNR_6           BNR-Asp box repeat


Domain annotation for each model (and alignments):
>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.38   1.7e+03      11      43 ..      27      59 ..      24      65 .. 0.86
   2 !   20.2   0.0   4.7e-08   0.00021      12     115 ..      71     188 ..      66     209 .. 0.84
   3 !   10.0   0.1   6.1e-05      0.27     376     396 ..     239     259 ..     217     263 .. 0.81
   4 !    3.2   0.2    0.0071        32       2      15 ..     345     358 ..     330     375 .. 0.72
   5 !    4.3   0.0    0.0032        14       2      52 ..     520     569 ..     502     589 .. 0.77
   6 !   14.6   0.1   2.4e-06     0.011       2      60 ..     602     659 ..     601     666 .. 0.90
   7 !    3.7   0.0    0.0048        22     380     399 ..     694     713 ..     690     773 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.38
                    SS-EE-GGGGTTEEBE-EEE-STTS--EEEEEE CS
  Sortilin-Vps10 11 ktwkkvkeklkgeaiqeivvhpfdkkkaylltd 43
                     twk+vk    g ++ +iv++p +k  ay+ td
      CDO72307.1 27 YTWKNVKIGGGGGFVPNIVFNPSQKGLAYARTD 59
                    69****9999999999*********99998776 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4.7e-08
                     S-EE-GGGGTTEEBE.....-EEE-STTS--EEEEEE.........S-EEEEESSTTSSEEEEE-SS-BS.........S--EEESSETTEEEEE CS
  Sortilin-Vps10  12 twkkvkeklkgeaiq.....eivvhpfdkkkaylltd.........skklyvttDrGktwkkfklpfkpsl......saeplsfhakdkdwlial 86 
                     +w+ + +  ++  ++     ++ ++p d ++ yl t          +++++++tD+Gkt+    lpfk          +e+l+++++ ++ l + 
      CDO72307.1  71 SWTPLLDFVDDARWNywgvdALATDPVDPDRLYLATGmytnswdpkNGQILISTDQGKTFIPSLLPFKVGGnmpgrgMGERLAVDPNSNNILFFG 165
                     5666666666666666667688999*********9999999****9****************999999866667778889999999877766666 PP

                     .......BTTS-EEEESSTTSSEEEEESS CS
  Sortilin-Vps10  87 gekkeskdckkkayystdggkswkklqes 115
                            +  + ++ std+g++w+++++ 
      CDO72307.1 166 ------ARSGNGLWKSTDFGATWTQVKDF 188
                     ......689999*************9875 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 6.1e-05
                     S-EEEEESSSSSS-EEEESS- CS
  Sortilin-Vps10 376 eadtfiSrDaGltWkevlkga 396
                     + ++f+S+DaG+tW+ v  ++
      CDO72307.1 239 SDNIFVSTDAGATWSAVAGQN 259
                     5689**********9997655 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.0071
                     EEEEESSTTSS-EE CS
  Sortilin-Vps10   2 evyiSeDeGktwkk 15 
                     ++++S+D+Gktw+ 
      CDO72307.1 345 QIFRSTDSGKTWTG 358
                     45666666666654 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.0032
                     EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESS CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttD 52 
                     +v iS+D+G+tw++    +++ a    v    + ++++  t+++ ++v++D
      CDO72307.1 520 QVAISTDSGNTWSQDYGAPDDVAGG-KVAISANGDTVLWKTSGNGILVSQD 569
                     5778888888888887777766654.4444556677777777777777777 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 2.4e-06
                     EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEE CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkf 60 
                     ++y+S D Gkt++   +  ++++  +++vhp     + + t +k ++ +tD G+t++ +
      CDO72307.1 602 KFYLSVDGGKTFTATGSLGSSTSPAKVIVHPNVTGDVWVST-DKGIFHSTDTGSTFTAI 659
                     79*************9988888888**********999966.699***********975 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.0048
                     EEESSSSSS-EEEESS-EEE CS
  Sortilin-Vps10 380 fiSrDaGltWkevlkgahky 399
                     f S+DaG++W ++ + ah +
      CDO72307.1 694 FRSDDAGANWVKINDAAHGF 713
                     55677777777776666654 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.8       2.1   9.4e+03       7      12 ..     353     358 ..     353     361 .. 0.84
   2 !   49.9  10.4     5e-17   2.3e-13       2      29 .]     813     840 ..     812     840 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.1
       CBM_1   7 GigWtG 12 
                 G++WtG
  CDO72307.1 353 GKTWTG 358
                 899**9 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 5e-17
       CBM_1   2 wgQCGGigWtGpTtCvsgatCtyqNeyY 29 
                 +gQCGGigWtG+T+C++g+tC++qN+yY
  CDO72307.1 813 YGQCGGIGWTGATACAAGSTCVAQNPYY 840
                 **************************** PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0019       8.6       2      10 ..     122     130 ..     121     130 .. 0.92
   2 !    7.5   1.5    0.0012       5.3       1      11 [.     173     183 ..     173     184 .. 0.87
   3 !   11.0   0.0   7.8e-05      0.35       1      11 [.     243     253 ..     243     254 .. 0.91
   4 !    7.5   1.0    0.0012       5.2       1      11 [.     347     357 ..     347     357 .. 0.91
   5 !    4.7   0.6    0.0096        43       2      11 ..     523     532 ..     522     533 .. 0.91
   6 !    7.2   0.0    0.0015       6.6       1      11 [.     604     614 ..     604     615 .. 0.90
   7 ?    0.4   0.0      0.26   1.2e+03       1       8 [.     639     646 ..     639     646 .. 0.90
   8 ?    0.7   0.3      0.21   9.2e+02       1      11 [.     647     657 ..     647     658 .. 0.88
   9 !    6.3   0.0    0.0028        12       1      11 [.     694     704 ..     694     705 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0019
                 EESSTTSS- CS
         BNR   2 yStDgGktW 10 
                 +StD+Gkt+
  CDO72307.1 122 ISTDQGKTF 130
                 8*******8 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0012
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + StD+G tW+
  CDO72307.1 173 WKSTDFGATWT 183
                 56********7 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 7.8e-05
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 ++StD G tWs
  CDO72307.1 243 FVSTDAGATWS 253
                 79********9 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0012
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + StD GktW+
  CDO72307.1 347 FRSTDSGKTWT 357
                 68********6 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.0096
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 +StD G tWs
  CDO72307.1 523 ISTDSGNTWS 532
                 8********9 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0015
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y S DgGkt++
  CDO72307.1 604 YLSVDGGKTFT 614
                 78*******97 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.26
                 EEESSTTS CS
         BNR   1 yyStDgGk 8  
                 ++StD G+
  CDO72307.1 639 WVSTDKGI 646
                 79****97 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.21
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 ++StD G t++
  CDO72307.1 647 FHSTDTGSTFT 657
                 68*******97 PP

  == domain 9  score: 6.3 bits;  conditional E-value: 0.0028
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + S+D G +W 
  CDO72307.1 694 FRSDDAGANWV 704
                 68********5 PP

>> BNR_6  BNR-Asp box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   5.2e+03       3      11 ..     122     130 ..     120     132 .. 0.87
   2 !   14.1   0.0   7.9e-06     0.035       1      14 []     172     185 ..     172     185 .. 0.95
   3 ?    1.4   0.0       0.1   4.6e+02       1      11 [.     242     252 ..     242     255 .. 0.91
   4 !    6.6   0.1    0.0021       9.3       1      12 [.     346     357 ..     346     359 .. 0.93
   5 ?   -2.9   0.0       2.4   1.1e+04       4       8 ..     532     536 ..     532     537 .. 0.85
   6 ?   -2.8   0.0       2.2     1e+04       4      12 ..     606     614 ..     604     615 .. 0.74
   7 ?   -4.0   0.0         4   1.8e+04       1      11 [.     646     656 ..     646     657 .. 0.79
   8 !    7.7   0.1   0.00096       4.3       2      14 .]     694     706 ..     694     706 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
       BNR_6   3 rSeDfGknf 11 
                 +S D Gk+f
  CDO72307.1 122 ISTDQGKTF 130
                 68999***9 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.9e-06
       BNR_6   1 LyrSeDfGknfkqi 14 
                 L++S DfG++++q+
  CDO72307.1 172 LWKSTDFGATWTQV 185
                 8***********97 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
       BNR_6   1 LyrSeDfGknf 11 
                 +++S D G+++
  CDO72307.1 242 IFVSTDAGATW 252
                 9*******999 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0021
       BNR_6   1 LyrSeDfGknfk 12 
                 ++rS D Gk+++
  CDO72307.1 346 IFRSTDSGKTWT 357
                 9**********7 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.4
       BNR_6   4 SeDfG 8  
                 S D+G
  CDO72307.1 532 SQDYG 536
                 89*** PP

  == domain 6  score: -2.8 bits;  conditional E-value: 2.2
       BNR_6   4 SeDfGknfk 12 
                 S D Gk+f+
  CDO72307.1 606 SVDGGKTFT 614
                 6677***96 PP

  == domain 7  score: -4.0 bits;  conditional E-value: 4
       BNR_6   1 LyrSeDfGknf 11 
                 ++ S D G +f
  CDO72307.1 646 IFHSTDTGSTF 656
                 89999988777 PP

  == domain 8  score: 7.7 bits;  conditional E-value: 0.00096
       BNR_6   2 yrSeDfGknfkqi 14 
                 +rS+D G+n+++i
  CDO72307.1 694 FRSDDAGANWVKI 706
                 9*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 5388.60
//
Query:       CDO72308.1  [L=524]
Description: hypothetical protein BN946_scf184977.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.9  14.6      0.028   14.9   0.1    7.4  8  LRR_4     Leucine Rich repeats (2 copies)
    0.00014   21.6   5.3         35    4.8   0.0    7.3  7  LRR_6     Leucine Rich repeat
    0.00021   21.0  13.0       0.84    9.5   0.3    6.3  7  LRR_8     Leucine rich repeat
  ------ inclusion threshold ------
       0.11   13.1  10.0         38    5.4   0.0    6.6  7  LRR_1     Leucine Rich Repeat
       0.16   11.9   0.0        0.4   10.6   0.0    1.7  1  DUF4224   Domain of unknown function (DUF4224)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00068       2.4       3      36 ..     155     192 ..     150     196 .. 0.75
   2 ?   -1.3   0.0      0.93   3.3e+03      19      28 ..     227     235 ..     215     244 .. 0.75
   3 !   11.2   0.2   0.00011      0.38       2      33 ..     263     297 ..     260     302 .. 0.85
   4 ?    4.7   0.0     0.012        42       3      30 ..     310     340 ..     309     343 .. 0.83
   5 ?    0.9   0.1      0.19   6.7e+02      13      36 ..     369     390 ..     364     394 .. 0.79
   6 !   12.6   2.3   4.1e-05      0.15       3      38 ..     413     454 ..     411     459 .. 0.79
   7 !   14.9   0.1   7.7e-06     0.028       1      33 [.     443     477 ..     443     486 .. 0.83
   8 ?    1.8   0.0     0.098   3.5e+02       3      33 ..     469     502 ..     467     504 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00068
                 --EEE--.SS---E-S-...HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLs.nNqltdipl...leklpnLkeLdLsgNnli 36 
                 Le+L L    ++ d  +   ++klp+L++L+L g++++
  CDO72308.1 155 LEELELTgFAKIADQTFatvISKLPSLRKLNLRGCTKV 192
                 67777774457777777555558*********888665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.93
                 HHH-TT--EE CS
       LRR_4  19 leklpnLkeL 28 
                 l ++++Lk+L
  CDO72308.1 227 L-NCKQLKVL 235
                 3.59999988 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00011
                 S--EEE--SS---E-S-...HHH-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipl...leklpnLkeLdLsgN 33 
                 nL++L L++  l+d      l+ +pnL+ LdLs+ 
  CDO72308.1 263 NLRSLKLRQAALSDAAVnqtLAICPNLERLDLSFT 297
                 9********9***9888776556*********764 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.012
                 --EEE--SS---E-S-HH..H.-TT--EEE- CS
       LRR_4   3 LevLdLsnNqltdiplle..k.lpnLkeLdL 30 
                 Le+L L ++++++ +ll     l  Lk+L L
  CDO72308.1 310 LEKLVLTSTKISSQDLLTmiApLMRLKVLAL 340
                 9***************886644888888855 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.19
                 --E-S-HHH-TT--EEE-.-S--- CS
       LRR_4  13 ltdiplleklpnLkeLdLsgNnli 36 
                 ltd   le++ +L+  +L gN+++
  CDO72308.1 369 LTD--ILENCSDLERMNLVGNTKL 390
                 555..6889******999999777 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 4.1e-05
                 --EEE--SS---E-S-..HH..........H-TT--EEE-.-S----- CS
       LRR_4   3 LevLdLsnNqltdipl..le..........klpnLkeLdLsgNnlitd 38 
                  ++L+L++  +t++ +  le          + pnL++L+L +N+   +
  CDO72308.1 413 CKHLNLAG--ITSLRSsdLEglahpdnvdeGSPNLQHLNL-NNT---S 454
                 799****9..999999774466688899988*********.663...3 PP

  == domain 7  score: 14.9 bits;  conditional E-value: 7.7e-06
                 SS--EEE--SS---E-S-HH.H.-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdiplle.k.lpnLkeLdLsgN 33 
                 pnL++L+L+n+ + d   ++ + + +L++L + g 
  CDO72308.1 443 PNLQHLNLNNTSVDDTAAPYiSaCVDLQTLEVAGT 477
                 8*************988866644*******99776 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.098
                 --EEE--SS---E-S-HH...H-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdiplle...klpnLkeLdLsgN 33 
                 L++L  ++++ t+ +l+     +  L +LdL+++
  CDO72308.1 469 LQTLEVAGTKFTSAGLFPiidACERLVKLDLTSC 502
                 899999999999999944464599******9665 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0098        35       3      14 ..     179     190 ..     177     194 .. 0.85
   2 ?    0.1   0.0      0.32   1.1e+03       3      17 ..     262     276 ..     260     279 .. 0.81
   3 ?    3.1   0.1     0.034   1.2e+02       2      12 ..     286     296 ..     286     299 .. 0.90
   4 ?   -2.5   0.0       2.2   7.9e+03       5      17 ..     310     322 ..     310     325 .. 0.83
   5 ?    2.9   0.2     0.039   1.4e+02       2      17 ..     442     457 ..     441     460 .. 0.84
   6 ?    2.6   0.0     0.049   1.8e+02       5      21 ..     469     485 ..     465     487 .. 0.86
   7 ?    1.3   0.0      0.13   4.6e+02       2      13 ..     491     502 ..     490     505 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0098
       LRR_6   3 thLteLdLsgNd 14 
                 ++L++L+L+g+ 
  CDO72308.1 179 PSLRKLNLRGCT 190
                 79********96 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
       LRR_6   3 thLteLdLsgNdIgD 17 
                 ++L++L L+   ++D
  CDO72308.1 262 SNLRSLKLRQAALSD 276
                 89******9888877 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.034
       LRR_6   2 nthLteLdLsg 12 
                 +++L+ LdLs+
  CDO72308.1 286 CPNLERLDLSF 296
                 799*******8 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.2
       LRR_6   5 LteLdLsgNdIgD 17 
                 L++L L++ +I+ 
  CDO72308.1 310 LEKLVLTSTKISS 322
                 78999**999985 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.039
       LRR_6   2 nthLteLdLsgNdIgD 17 
                 +++L++L+L+   ++D
  CDO72308.1 442 SPNLQHLNLNNTSVDD 457
                 689******9988887 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.049
       LRR_6   5 LteLdLsgNdIgDeGae 21 
                 L++L+++g +++ +G+ 
  CDO72308.1 469 LQTLEVAGTKFTSAGLF 485
                 99*************96 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.13
       LRR_6   2 nthLteLdLsgN 13 
                 +  L +LdL+++
  CDO72308.1 491 CERLVKLDLTSC 502
                 56799******9 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0016       5.7      42      59 ..     172     189 ..     142     190 .. 0.75
   2 ?   -3.3   0.1       2.3   8.1e+03       3      17 ..     222     236 ..     221     238 .. 0.67
   3 !    9.5   0.3   0.00023      0.84      23      59 ..     260     297 ..     255     299 .. 0.88
   4 ?   -0.0   0.1      0.21   7.5e+02       3      15 ..     310     322 ..     306     341 .. 0.63
   5 ?    1.2   0.1      0.09   3.2e+02      30      59 ..     359     387 ..     347     390 .. 0.70
   6 !    5.9   0.0    0.0031        11      23      56 ..     441     474 ..     435     479 .. 0.67
   7 ?   -2.4   0.0       1.2   4.3e+03      50      59 ..     493     502 ..     489     507 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
                 GGGGTT--S-.EEE--SS CS
       LRR_8  42 pgafsgLpsLrsLdLsgN 59 
                 + ++s LpsLr+L+L+g+
  CDO72308.1 172 ATVISKLPSLRKLNLRGC 189
                 578899*********986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
                 -SEEE-TTS--SEE- CS
       LRR_8   3 LtsLdLsnNrltsld 17 
                 L s+ L++ +l++l+
  CDO72308.1 222 LASILLNCKQLKVLK 236
                 667777777777664 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00023
                 T-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS CS
       LRR_8  23 glsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgN 59 
                 +lsnL++L+L++  l+    +++++ +p+L+ LdLs +
  CDO72308.1 260 QLSNLRSLKLRQAALSDaAVNQTLAICPNLERLDLSFT 297
                 59***********99998667**************976 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.21
                 -SEEE-TTS--SE CS
       LRR_8   3 LtsLdLsnNrlts 15 
                 L++L+L++++++s
  CDO72308.1 310 LEKLVLTSTKISS 322
                 5555555555544 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.09
                 EE--SS---GGGGGGGTT--S-.EEE--SS CS
       LRR_8  30 LdLsnNllttlspgafsgLpsLrsLdLsgN 59 
                 + L++ +l++l  + +++++ L+ ++L gN
  CDO72308.1 359 MTLTDDTLRSL-TDILENCSDLERMNLVGN 387
                 55666677777.577777777777777777 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0031
                 T-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 g +nL++L+L+n + +   +  +s +  L+ L +
  CDO72308.1 441 GSPNLQHLNLNNTSVDDTAAPYISACVDLQTLEV 474
                 5688888888888776666666666666666655 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 1.2
                 S-.EEE--SS CS
       LRR_8  50 sLrsLdLsgN 59 
                 +L +LdL+++
  CDO72308.1 493 RLVKLDLTSC 502
                 4445555444 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.029     1e+02       1      10 [.     180     189 ..     180     204 .. 0.90
   2 ?   -2.7   0.2       4.9   1.7e+04       1       8 [.     263     270 ..     263     271 .. 0.83
   3 ?    2.1   0.0      0.13   4.7e+02       1       9 [.     288     296 ..     288     323 .. 0.87
   4 ?   -1.6   0.1         2   7.3e+03       2      11 ..     366     377 ..     365     393 .. 0.64
   5 ?   -2.2   0.0       3.3   1.2e+04       3       8 ..     414     419 ..     413     432 .. 0.65
   6 ?    5.4   0.0     0.011        38       1      11 [.     444     454 ..     444     466 .. 0.80
   7 ?    1.7   0.0      0.18   6.4e+02       2      12 ..     494     504 ..     493     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
       LRR_1   1 nLrhLdLsnn 10 
                 +Lr+L+L+++
  CDO72308.1 180 SLRKLNLRGC 189
                 69*******9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.9
       LRR_1   1 nLrhLdLs 8  
                 nLr+L L+
  CDO72308.1 263 NLRSLKLR 270
                 89**9886 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.13
       LRR_1   1 nLrhLdLsn 9  
                 nL++LdLs 
  CDO72308.1 288 NLERLDLSF 296
                 8******75 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2
       LRR_1   2 LrhL.d.Lsnnp 11 
                 Lr+L d L+n++
  CDO72308.1 366 LRSLtDiLENCS 377
                 666642367776 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 3.3
       LRR_1   3 rhLdLs 8  
                 +hL+L 
  CDO72308.1 414 KHLNLA 419
                 789984 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.011
       LRR_1   1 nLrhLdLsnnp 11 
                 nL+hL+L+n +
  CDO72308.1 444 NLQHLNLNNTS 454
                 8******9976 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.18
       LRR_1   2 LrhLdLsnnpl 12 
                 L +LdL+++++
  CDO72308.1 494 LVKLDLTSCRG 504
                 889******86 PP

>> DUF4224  Domain of unknown function (DUF4224)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011       0.4      17      34 ..     229     246 ..     227     249 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF4224  17 saQakwLranGipfvvra 34 
                 ++Q k+L+a Gip +++a
  CDO72308.1 229 CKQLKVLKAAGIPNWTDA 246
                 69**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.41s 00:00:01.10 Elapsed: 00:00:00.60
# Mc/sec: 2628.71
//
Query:       CDO72309.1  [L=523]
Description: hypothetical protein BN946_scf184977.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3361.92
//
Query:       CDO72310.1  [L=446]
Description: hypothetical protein BN946_scf184977.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3116.85
//
Query:       CDO72311.1  [L=272]
Description: hypothetical protein BN946_scf184977.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-23   83.9  23.5      4e-11   43.1   5.6    3.1  2  DUF846    Eukaryotic protein of unknown function (DUF846)
     0.0011   18.3   5.4      0.023   14.0   1.3    2.1  2  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> DUF846  Eukaryotic protein of unknown function (DUF846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   9.9   4.9e-14   4.4e-10       2      78 ..      65     126 ..      64     140 .. 0.86
   2 !   43.1   5.6   4.5e-15     4e-11      89     138 ..     180     229 ..     166     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.9e-14
      DUF846   2 hpvallfhllfklaailvylfgslfsnsfilkfvvlilllaldfwvvknisGrlLvgLrwwnevdedgeskwvFesr 78 
                 hp++l+f+++f++aai vy++ ++f+++++l+ v++++lla+dfw+++               vd+dges+wvFesr
  CDO72311.1  65 HPTVLFFLYFFRIAAITVYILSGFFISNYVLSSVIVVVLLAMDFWNCR---------------VDDDGESYWVFESR 126
                 9********************************************986...............55556666666655 PP

  == domain 2  score: 43.1 bits;  conditional E-value: 4.5e-15
      DUF846  89 sklFWlllyvtpllwvvllilailslkllwlllviialvlsltnlygftk 138
                 +++FW+++y++pllw++lli++il+++l+++++v++alv+++tn++gft+
  CDO72311.1 180 RRMFWIAVYTFPLLWLALLIVSILKFNLSFIPIVVLALVFNVTNAIGFTY 229
                 68**********************************************85 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1   0.00062       5.6     188     241 ..      67     118 ..      43     126 .. 0.76
   2 !   14.0   1.3   2.6e-06     0.023     179     249 ..     173     242 ..     148     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00062
        UbiA 188 arillalllavlllallllllalllllylllalllaalallraarlvrrrdakk 241
                 ++   ++l+++ ++a++++ l ++    ++l++++++++l++ ++++r +d+ +
  CDO72311.1  67 TVL--FFLYFFRIAAITVYILSGFFISNYVLSSVIVVVLLAMDFWNCRVDDDGE 118
                 333..5566666666889999999999**************9999988877765 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.6e-06
        UbiA 179 lpvvlGrkaarillalllavlllallllllalllllylllalllaalallraarlvrrrdakkaakfflfl 249
                  pv+l  ++ ++ +a++++ ll++ ll++  l   l ++  ++la+++ +  a  +++ d+++++k++ +l
  CDO72311.1 173 APVLLRVRRMFW-IAVYTFPLLWLALLIVSILKFNLSFIPIVVLALVFNVTNAIGFTYADRDAKQKWANNL 242
                 699999999999.555666666668888889999999999999999****************999998555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1829.24
//
Query:       CDO72312.1  [L=686]
Description: hypothetical protein BN946_scf184977.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-21   74.3   0.0    4.9e-19   68.5   0.0    2.9  1  DSPc           Dual specificity phosphatase, catalytic domain
     0.0055   16.3   0.0     0.0083   15.7   0.0    1.2  1  Y_phosphatase  Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   5.4e-23   4.9e-19       1     132 [.     155     336 ..     155     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 5.4e-23
                 EEEEECCHHC.HHHHHHHTCSEEEEESSSSSEC..ECCTTTTSEEEEEC.CES.................................STTSCCGGGHHHH CS
        DSPc   1 lylgskstas.lallsklgitlvinvtkevpna..nalkkseieklrip.ved.................................ehetkiskyleea 62 
                 ++lgs+ ++     l + gi+ v+nv+kev+    +  ++s + +++ p ++                                   +++ +++ +++a
  CDO72312.1 155 IWLGSEDNVRdWRGLMERGIKSVLNVAKEVQTDfdQSVAQSMRPFMSTPdLHAtrtsvagrestyypahlpsgrpamhylklhwshGQDDLVQEGFPAA 253
                 67888888887788888999999999999987677445566666666665555777777777888888889999999999999986778889999**** PP

                 HHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHHHHHTSC.............HHHHHHHHHHHSTT-SSTHHHHHHHHHHHH CS
        DSPc  63 vefidkakqkgkkvlVHCqaGisRSatliiaYlmktknls.............lneayeflkerrpaispnagfirqLleyek 132
                  +f+d a ++g  vlVHCq+G+sRSatl+ia  m+    +             ++ ay+f+ke++++i pn+++i qLl+ye+
  CDO72312.1 254 FRFVDRALERGDGVLVHCQCGVSRSATLVIALVMRAAAQRspsvpsevwalkgMQGAYSFVKEKSKWIGPNMSLIYQLLDYER 336
                 **********************************987644111111111111145688888********************97 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.2e-07    0.0083     137     199 ..     232     293 ..     204     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.2e-07
                    EEEESSS-SSS...SGSCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHH CS
  Y_phosphatase 137 qlqytnWpdhg...vpesaksllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqlea 199
                    ++   +W++ +   v+e   +++++++++ ++       v+VhC  Gv+R++t+v + ++   +++
     CDO72312.1 232 HYLKLHWSHGQddlVQEGFPAAFRFVDRALERG----DGVLVHCQCGVSRSATLVIALVMRAAAQR 293
                    444445554442237777777778888877777....99****************99888766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4516.56
//
Query:       CDO72313.1  [L=343]
Description: hypothetical protein BN946_scf184977.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-34  117.6   0.0    4.1e-34  116.9   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    1.2e-32  112.8   0.0    1.7e-32  112.3   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.3e-06   28.6   0.0    0.00024   21.3   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain
     0.0092   16.2   0.0      0.034   14.3   0.0    1.9  2  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   9.2e-38   4.1e-34       2      99 .]     105     202 ..     104     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 9.2e-38
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-SE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGkf 97 
                    ++l+ek  vs++t+i+rf+lp+++++lglp+Gqh+ ++++i+g++++RsYtp+ss+++ G+++ll+k y++G++s + + lkigd++++kGP+G+f
     CDO72313.1 105 FPLKEKIAVSPNTAIYRFALPHPDDVLGLPIGQHISVSAEINGKDIMRSYTPTSSDDDLGHFDLLIKSYEKGNISRYVSLLKIGDKIRVKGPKGQF 200
                    689********************************************************************************************* PP

                    EC CS
  FAD_binding_6  98 eY 99 
                    +Y
     CDO72313.1 201 RY 202
                    99 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   3.9e-36   1.7e-32       1     108 [.     212     319 ..     212     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 3.9e-36
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    miagGtGi+P+++++ra+l+++ d+tk+ l+y+n + ed+l+++el+ela+k+++r++v++v+++++ +wegg g+v+++ +e++++ ++++  v+
     CDO72313.1 212 MIAGGTGITPMLQIIRAALKNPLDRTKLSLIYANVNPEDILLKKELDELAAKHSHRFRVYYVLNNPPPSWEGGAGFVTKEHIEQHIPRTDKDIKVL 307
                    9********************99****************************************************************99******* PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    +CGpp+Mi+a++
     CDO72313.1 308 MCGPPPMITAMK 319
                    ********9987 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.3e-08   0.00024       4      67 ..     210     267 ..     207     275 .. 0.86
   2 !    5.3   0.0    0.0045        20     133     153 ..     300     320 ..     289     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.3e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegn 67 
                    + ++agG+Gitp++ i++  lk+      + +k++li ++ + +++  +k+ L+el+ ++s  +
     CDO72313.1 210 IGMIAGGTGITPMLQIIRAALKNPL----DRTKLSLIYANVNPEDIL-LKKELDELAAKHSH-R 267
                    569******************9996....9***************95.55599999999887.3 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0045
                    xxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 133 knssvgvfvCGppklvkevkk 153
                     ++ + v++CGpp ++  +kk
     CDO72313.1 300 TDKDIKVLMCGPPPMITAMKK 320
                    57899**********998887 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.6e-06     0.034      66     120 ..     146     199 ..     122     200 .. 0.89
   2 ?   -1.4   0.0      0.56   2.5e+03      28      55 ..     298     325 ..     287     335 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.6e-06
  FAD_binding_9  66 derpvmRtYtvraldaeaeeldidfvlHgdegpaarwAaqAqpGdelaivgPgga 120
                    + + +mR+Yt+ + d + + +d+ +   ++ g  +r+ +  + Gd++ + gP+g+
     CDO72313.1 146 NGKDIMRSYTPTSSDDDLGHFDLLIKSYEK-GNISRYVSLLKIGDKIRVKGPKGQ 199
                    55779*****************99999988.*********************997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.56
  FAD_binding_9  28 dgtDqhikLllpepgqtepelppeltee 55 
                    + tD+ ik+l+  p   ++++  +l+e 
     CDO72313.1 298 PRTDKDIKVLMCGPPPMITAMKKHLAEL 325
                    6899999999988887777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2574.46
//
Query:       CDO72314.1  [L=239]
Description: hypothetical protein BN946_scf184977.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1821.85
//
Query:       CDO72315.1  [L=276]
Description: hypothetical protein BN946_scf184977.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-08   34.1   0.0      5e-08   33.3   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
     0.0021   18.0   0.1     0.0047   16.9   0.1    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.031   14.6   0.0      0.063   13.6   0.0    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain
       0.12   12.7   0.0       0.24   11.7   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
       0.32   11.4   1.0       0.62   10.5   0.0    1.9  2  Jag_N     Jag N-terminus


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.4e-11     5e-08       1      73 [.       6      84 ..       6      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.4e-11
                EES-TTSHHHHHHHHHHHHHT--.....EEEE---TTTT.HHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-G CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglp.....vevvevtpgeh.deellaknplgkvPvLeddgealtdSlaIidyLeelypg 73
                Ly f  S+++  + laL e+g+p     +++ ++ +ge+  +++  ++++ ++P+L+ dg+a+t + ++++yL e +p 
  CDO72315.1  6 LYTFGLSVWSAAPELALVELGYPedavdIKIINLVEGENfTPQFTSITRNATLPTLVADGKAYTNTKDVVHYLIEHAPK 84
                8999******************8666557777777999999*********************************99885 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.3e-06    0.0047      20      69 .]     199     264 ..     172     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 TT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-...............---.TT-HHHHHHHHH CS
     GST_C_2  20 ahLadspflfGdqptlaDialapflvrlraagpgf...............dir.eaypnlraWler 69 
                 a L  s fl+G +p+  D+ la++lvr    + ++               +i  + +  ++aW+er
  CDO72315.1 199 AALPESGFLGGQNPGEDDFHLAAWLVRIAHLTGATadkdgikaleketkkPIPpKVAAYWAAWVER 264
                 4566777********************965554554556678777777774443667777777776 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05     0.063       4      74 ..       5      78 ..       2      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
                EEESSSTSHTHHHHHHHHHHTT-E...EEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHH CS
       GST_N  4 tlysirgsprahrirlllaakgve...yevvpldfeageekspellklnplgkvPaLedngkkltESraIleYi 74
                +ly++  s ++ +++l+l ++g +   + ++ +++ +ge+  p+++++  ++ +P+L+ +gk  t +   ++Y+
  CDO72315.1  5 ILYTFGLSVWSAAPELALVELGYPedaVDIKIINLVEGENFTPQFTSITRNATLPTLVADGKAYTNTKDVVHYL 78
                689999999**********999863336667788999***********************99877776666665 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05      0.24       4      67 ..      14      78 ..      11      81 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
                HHHHHHHHHHHCT--EE......EEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHH CS
     GST_N_2  4 wahRvlialalkgledi......isvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryl 67
                w+    +al ++g +        i+ v    +g++ +++f  ++ + t+P+L+  dg+ ++ +++ + yl
  CDO72315.1 14 WSAAPELALVELGYPEDavdikiINLV----EGENFTPQFTSITRNATLPTLVA-DGKAYTNTKDVVHYL 78
                555556666666666552332213334....6888889***************6.99*999999999998 PP

>> Jag_N  Jag N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.62       9      29 ..      17      37 ..      15      39 .. 0.91
   2 ?   -3.0   0.2       2.7   9.6e+03      32      38 ..     202     208 ..     202     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
       Jag_N  9 AiekAlkeLgvsrdeveieVl 29
                A e Al eLg ++d v+i+++
  CDO72315.1 17 APELALVELGYPEDAVDIKII 37
                6689****************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
       Jag_N  32 gskGfLG 38 
                 +++GfLG
  CDO72315.1 202 PESGFLG 208
                 789***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2215.99
//
Query:       CDO72316.1  [L=562]
Description: hypothetical protein BN946_scf184977.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-23   82.0   0.4    6.1e-23   82.0   0.4    2.5  3  CAP        Cysteine-rich secretory protein family
  ------ inclusion threshold ------
        2.8    7.8  14.0        3.8    7.3  14.0    1.3  1  SPX        SPX domain


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.9      0.75   6.7e+03      40      40 ..     209     209 ..     128     253 .. 0.60
   2 !   82.0   0.4   6.8e-27   6.1e-23       1     114 [.     261     362 ..     261     369 .. 0.90
   3 ?   -1.8   0.0       0.6   5.4e+03       8      31 ..     519     542 ..     505     554 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.75
                 - CS
         CAP  40 s 40 
                 s
  CDO72316.1 209 S 209
                 1 PP

  == domain 2  score: 82.0 bits;  conditional E-value: 6.8e-27
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH.............HHHHHT CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegsighftnll 99 
                 l+ahN +Ra++g++pL+w+++L++ Aq++a++c  +hs     p g++l ++  +++          +++av+sW +e   y++++ + +   hft+++
  CDO72316.1 261 LQAHNSVRAQHGAAPLTWSDDLAAKAQQWADNCVFQHSGGKLGPFGENLAAGTGSSY---------GIQAAVKSWTDEVSQYDPNNPQPS---HFTQVV 347
                 789******************************777777777777777777777777.........9****************9999988...****** PP

                 -SS--EEEEEEEEBT CS
         CAP 100 wpkstkvGcavatcg 114
                 w+++t+vGcav  c 
  CDO72316.1 348 WKATTQVGCAVQSCN 362
                 ************997 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.6
                 HHHTT----EE-HHHHHHHHHHHH CS
         CAP   8 RaaaglppLkwdatLekaAqdhar 31 
                 R ++gl pL + +++ ++A+  +r
  CDO72316.1 519 RDELGLTPLHYYDSAIQLARHASR 542
                 68999*****99999999998776 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  14.0   0.00042       3.8      62     136 ..     157     259 ..      85     351 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00042
         SPX  62 e.................rtepstsaaadesgnsaadasssepkdeae.......slprrsplsrssrssssygglvssppsansssssddssesnpa. 135
                                   + +p+ts++++++++ a++++s++p+d+         ++p  +p+s+s++++ + +g ++ + ++n +++s++s+++ ++ 
  CDO72316.1 157 LvasttapaskatthsttSAKPTTSSTTEHTTTPASTSHSDAPQDTTVtitksspKQPAATPNSSSGSNDNNDSGNSNGNDNSNGNGGSSSSDGATSQs 255
                 044322222112122333444444444444444444444444444444666566666666666666677777777766666666666666666666333 PP

         SPX 136 ...d 136
                    +
  CDO72316.1 256 didQ 259
                 3330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 4146.77
//
Query:       CDO72317.1  [L=129]
Description: hypothetical protein BN946_scf184977.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 922.44
//
Query:       CDO72318.1  [L=271]
Description: hypothetical protein BN946_scf184977.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-11   43.1   0.0    5.9e-09   36.1   0.1    2.3  2  DUF2012   Protein of unknown function (DUF2012)


Domain annotation for each model (and alignments):
>> DUF2012  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0018        32       8      34 ..      39      62 ..      33      66 .. 0.81
   2 !   36.1   0.1   3.3e-13   5.9e-09      48     123 .]     113     185 ..     111     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0018
     DUF2012  8 antrvlLdsgqqrkfkalvrrDGsFif 34
                 +++v+Ld g+    ++ v+rDGsF++
  CDO72318.1 39 GQAKVVLDDGKM---RGGVTRDGSFTM 62
                567888888777...9*********97 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 3.3e-13
     DUF2012  48 speyvFepyrVdvkdkgkakasklrivetaevnvvdesgneesyplkikavarreyyeerekfsilsLlknPmvLl 123
                 + ++  +++rVdv  +    ++++ ++    + +     +  +yp+++ a +r++y+++ e+f+il++++nPm+++
  CDO72318.1 113 HTDHLLPQLRVDVF-QSDTLPEVRPYFPGTPLSP--AAPATLPYPIVLSARGRADYFVPHESFNILAMFQNPMMMM 185
                 5689999******9.5555566777777777766..667789*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2103.66
//
Query:       CDO72319.1  [L=286]
Description: hypothetical protein BN946_scf184977.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-31  108.4   0.9    3.2e-31  107.6   0.9    1.3  1  Fcf1      Fcf1


Domain annotation for each model (and alignments):
>> Fcf1  Fcf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.9   1.8e-35   3.2e-31       8      99 .]      74     164 ..      69     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 1.8e-35
                 EEEEEHHHHHHHHHCT..-HHHHHHHTTSEEE----SS---HHHHHHHHH-BTB-TT-EEEE-S-HHHHHHHHTSTT--EEEEE--EEEE-- CS
        Fcf1   8 kpliTqCviaeleklgkklkealkiaktferlkCnhkkptsaddClvsvvkkkknkkryivAtqDkdlrrrlrkipgvPilyikrsvmvlEk 99 
                 + +iTqC+i+el+ +gk+ + a+++aktfer+kCnh+++++ ddC+ svv + +nk+ry+vA+  ++lr++lr+ipgvPi++++rsvm+lE+
  CDO72319.1  74 QSVITQCCIHELYLQGKEQQPAVDLAKTFERRKCNHREAIPGDDCISSVVGD-TNKHRYVVASHSHELRQKLRAIPGVPIVHMNRSVMILEP 164
                 679************************************************5.5************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2364.77
//
Query:       CDO72320.1  [L=350]
Description: hypothetical protein BN946_scf184977.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-58  192.8  14.6    1.5e-10   41.4   0.5    6.8  7  WD40           WD domain, G-beta repeat
    6.6e-29  100.1   0.3      2e-06   28.0   0.0    6.0  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    3.8e-13   49.8   0.1    7.8e-05   22.6   0.0    4.1  4  eIF2A          Eukaryotic translation initiation factor eIF2A
    3.3e-10   39.2   7.1     0.0084   14.8   0.3    5.6  6  Nup160         Nucleoporin Nup120/160
    3.8e-09   36.0   4.4      0.012   14.6   1.7    4.4  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    1.2e-07   31.4   0.0     0.0013   18.1   0.0    3.4  3  WD40_like      WD40-like domain
    0.00016   21.1   0.0       0.14   11.4   0.0    2.5  2  RAB3GAP2_N     Rab3 GTPase-activating protein regulatory subu
    0.00093   18.3   0.0      0.027   13.5   0.0    2.6  3  Coatomer_WDAD  Coatomer WD associated region
     0.0045   16.4   0.3        9.7    5.4   0.0    3.4  4  Nbas_N         Neuroblastoma-amplified sequence, N terminal
  ------ inclusion threshold ------
      0.016   14.1   0.1       0.39    9.6   0.0    2.8  3  PALB2_WD40     Partner and localizer of BRCA2 WD40 domain
      0.039   12.0   0.0        0.3    9.0   0.1    2.2  2  IKI3           IKI3 family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   7.7e-12   1.3e-08       3      38 .]      71     107 ..      69     107 .. 0.91
   2 !   41.4   0.5   9.4e-14   1.5e-10       2      38 .]     112     149 ..     111     149 .. 0.92
   3 !   36.1   0.1   4.5e-12   7.4e-09       4      38 .]     156     191 ..     153     191 .. 0.95
   4 !   37.3   0.1   1.9e-12     3e-09       1      38 []     195     233 ..     195     233 .. 0.94
   5 !   24.3   0.1   2.4e-08     4e-05       1      38 []     237     276 ..     237     276 .. 0.92
   6 !   23.1   0.1   5.7e-08   9.3e-05       2      38 .]     281     320 ..     280     320 .. 0.89
   7 ?   -0.9   0.0       2.3   3.8e+03       3      15 ..     326     339 ..     324     344 .. 0.67

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 7.7e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ l+GH  s++s++fspdg++las+  D+ +++Wd
  CDO72320.1  71 PTYMLSGHsRSISSVKFSPDGKMLASCAADKLIKLWD 107
                 67889***666****************99*******9 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 9.4e-14
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++t++GH  +++++a+s++g +las+sdD+tvr+W+
  CDO72320.1 112 DIIHTFEGHsEGISDVAWSSNGEFLASASDDKTVRLWS 149
                 679******666*************************5 PP

  == domain 3  score: 36.1 bits;  conditional E-value: 4.5e-12
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +r+l GH ++v ++ f+p++++lasG+ D tvr+Wd
  CDO72320.1 156 VRVLQGHtNFVFCVNFNPSSTLLASGGFDETVRVWD 191
                 799****999****************99*******9 PP

  == domain 4  score: 37.3 bits;  conditional E-value: 1.9e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++l+tl +H ++vt++ f++dg+++as+ +Dg +riWd
  CDO72320.1 195 GKTLKTLPAHsDPVTAVTFNHDGTLIASCAMDGLIRIWD 233
                 6899******666****************99*******9 PP

  == domain 5  score: 24.3 bits;  conditional E-value: 2.4e-08
                 TEEEEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssv.tslafspdgawlasGsdDgtvriWd 38 
                 gqcl+tl    +++ ++++f p+++++++++ D t+r+W+
  CDO72320.1 237 GQCLKTLADDdNPIcSHVKFTPNSRFILASTQDSTIRLWN 276
                 799***9877788979************999********8 PP

  == domain 6  score: 23.1 bits;  conditional E-value: 5.7e-08
                 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 +c++t+tGH +  +++   f p  + ++sGs+D +v++Wd
  CDO72320.1 281 KCVKTYTGHtNRTYCIFadFAPGRKHIVSGSEDMKVYLWD 320
                 8********87766666679*******************9 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 2.3
                 EEEEEESSSS.EEE CS
        WD40   3 clrtltGHss.vts 15 
                  +++l+GH + v +
  CDO72320.1 326 IVQVLDGHRDvVIA 339
                 68899***553334 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.2e-09     2e-06      37      81 ..      78     122 ..      72     126 .. 0.91
   2 !   23.0   0.0   4.6e-08   7.4e-05      37      90 ..     120     172 ..     117     174 .. 0.91
   3 !   17.0   0.0   3.3e-06    0.0054      39      88 ..     164     212 ..     159     213 .. 0.90
   4 !   19.0   0.0   7.9e-07    0.0013      38      78 ..     205     245 ..     203     252 .. 0.88
   5 !   13.5   0.0     4e-05     0.065      42      86 ..     252     295 ..     244     300 .. 0.85
   6 ?    1.9   0.0      0.17   2.7e+02      50      81 ..     304     335 ..     298     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.2e-09
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++++++s++++pdgk+La   +d  ++l dae+g+++h+++ +se
   CDO72320.1  78 HSRSISSVKFSPDGKMLASCAADKLIKLWDAENGDIIHTFEGHSE 122
                  6789************************************98876 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.6e-08
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++ ++++aW+ +g++La a +d +vrl + e+  vv+ l+ +++  v c++++
   CDO72320.1 120 HSEGISDVAWSSNGEFLASASDDKTVRLWSLETFAVVRVLQGHTN-FVFCVNFN 172
                  567899**********************************99988.69999986 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 3.3e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  + v +++++p+ +lLa +  d +vr+ d+  gk++++l+++s+  vt ++
   CDO72320.1 164 NFVFCVNFNPSSTLLASGGFDETVRVWDVARGKTLKTLPAHSDP-VTAVT 212
                  5678899***********************************95.88876 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 7.9e-07
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  +  v+++ +++dg+l+a    dg +r+ d esg+++++l  
   CDO72320.1 205 SDPVTAVTFNHDGTLIASCAMDGLIRIWDTESGQCLKTLAD 245
                  5689********************************99854 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 4e-05
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  +++++ p+ +++  +++d+++rl + ++ k+v++++ ++++   c
   CDO72320.1 252 SHVKFTPNSRFILASTQDSTIRLWNTQTSKCVKTYTGHTNR-TYC 295
                  5899******************************9988774.555 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.17
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvkse 81 
                   k ++ + +d +v l d ++ ++v+ l+ +++
   CDO72320.1 304 RKHIVSGSEDMKVYLWDLQTREIVQVLDGHRD 335
                  57789999999************999988877 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.6e-05     0.059     101     162 ..      80     140 ..      65     147 .. 0.84
   2 !   22.6   0.0   4.8e-08   7.8e-05      59     160 ..     122     222 ..     117     224 .. 0.81
   3 !   19.1   0.1   5.8e-07   0.00095     104     170 ..     209     275 ..     204     296 .. 0.77
   4 ?    2.1   0.0     0.093   1.5e+02      75     103 ..     306     334 ..     299     340 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                 ES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE-TTSSEEEEEE CS
       eIF2A 101 qkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvewspdgryvlTat 162
                 ++  +++fsp gk+++ +    l   +++wd ++ + i+++e  ++  ++v ws +g++++ a+
  CDO72320.1  80 RSISSVKFSPDGKMLASCAADKL---IKLWDAENGDIIHTFEghSEGISDVAWSSNGEFLASAS 140
                 455689*****************...********999999973255689**********99887 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 4.8e-08
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEE...E-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE..E-TT--EEEE- CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtif...fspkgklvllaGfgnlaGeleiwdvkkkkkiaka..eaanatlvews 152
                 eg i dvaWs++++ f+      +++v l++l+  +++++ + + N +f   f+p+ +l++ +Gf ++   + +wdv + k+++++  ++   t v ++
  CDO72320.1 122 EG-ISDVAWSSNGE-FLA-SASDDKTVRLWSLETFAVVRVLQGHTNFVFcvnFNPSSTLLASGGFDET---VRVWDVARGKTLKTLpaHSDPVTAVTFN 214
                 44.9*******996.543.557889********99999999999997654449**************9...*******9998888621445578999** PP

                 TTSSEEEE CS
       eIF2A 153 pdgryvlT 160
                  dg++++ 
  CDO72320.1 215 HDGTLIAS 222
                 *9999865 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 5.8e-07
                 -EEEE-TTSSEEEEE-TTSSS-EEEEEETT...TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS CS
       eIF2A 104 NtiffspkgklvllaGfgnlaGeleiwdvk...kkkkiakaeaanatlvewspdgryvlTattaprlrvd 170
                  ++ f+  g+l++ + +  l   + iwd++    +k++a  +++ +++v++ p++r++l +t    +r+ 
  CDO72320.1 209 TAVTFNHDGTLIASCAMDGL---IRIWDTEsgqCLKTLADDDNPICSHVKFTPNSRFILASTQDSTIRLW 275
                 6799**********987766...******9553456677778999**************99875444433 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.093
                 EEEESSSSCEEEEEECSCEEEEEEEEES- CS
       eIF2A  75 aviyGkmpakvslfdlkvkviskleeqkr 103
                  ++ G  ++kv+l+dl+ + i+++   +r
  CDO72320.1 306 HIVSGSEDMKVYLWDLQTREIVQVLDGHR 334
                 589**************999988766665 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.071   1.2e+02     229     257 ..      90     118 ..      76     128 .. 0.82
   2 !    6.9   0.1    0.0013       2.1     229     253 ..     132     156 ..     123     161 .. 0.82
   3 ?    3.4   0.0     0.015        24     228     255 ..     171     200 ..     160     205 .. 0.80
   4 !   10.5   0.0   0.00011      0.17     220     257 ..     206     245 ..     201     252 .. 0.84
   5 !   14.8   0.3   5.2e-06    0.0084     228     256 ..     256     286 ..     248     296 .. 0.83
   6 ?    0.6   0.0       0.1   1.7e+02     229     257 ..     303     331 ..     288     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.071
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatid 257
                 + ++l++   d+ +++W+ ++g ++ t++
  CDO72320.1  90 DGKMLASCAADKLIKLWDAENGDIIHTFE 118
                 77899999**************9998865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
                 TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkcl 253
                 +  +l+++s d+++r+W+l+t  ++
  CDO72320.1 132 NGEFLASASDDKTVRLWSLETFAVV 156
                 5679****************97666 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.015
                 ...TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkclat 255
                     +t+l++   d ++rvW+++ gk+l t
  CDO72320.1 171 FnpSSTLLASGGFDETVRVWDVARGKTLKT 200
                 5556777778888**********9999876 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00011
                 EEET......TTTEEEEEETT-EEEEEETTTTEEEEE.EE CS
      Nup160 220 dvavavvei.gqtylfalsrdgkLrvWnlltgkclat.id 257
                 d+++av+   + t++++   dg +r+W++++g+cl t  d
  CDO72320.1 206 DPVTAVTFNhDGTLIASCAMDGLIRIWDTESGQCLKTlAD 245
                 56666765579999*********************99555 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 5.2e-06
                 ...TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkclati 256
                    ++ +++a ++d ++r+Wn++t kc+ t 
  CDO72320.1 256 FtpNSRFILASTQDSTIRLWNTQTSKCVKTY 286
                 245899**********************984 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.1
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatid 257
                 g++++++ s d k+ +W+l+t  ++ + d
  CDO72320.1 303 GRKHIVSGSEDMKVYLWDLQTREIVQVLD 331
                 8999999**************99998765 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00029      0.48     184     215 ..      75     107 ..      67     112 .. 0.87
   2 !    7.8   0.0   0.00085       1.4     183     216 ..     116     150 ..     107     160 .. 0.85
   3 ?    1.1   0.0     0.097   1.6e+02     185     216 ..     160     192 ..     149     200 .. 0.82
   4 !   14.6   1.7   7.2e-06     0.012     186     283 ..     203     286 ..     191     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00029
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffq 215
                 ++ hs  i++  fspdG  la +++d ++k++ 
  CDO72320.1  75 LSGHSrSISSVKFSPDGKMLASCAADKLIKLWD 107
                 566776899*********************996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00085
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqv 216
                  +e hs  i++ a+s++G  la as d +v+++ +
  CDO72320.1 116 TFEGHSeGISDVAWSSNGEFLASASDDKTVRLWSL 150
                 57888867***********************9976 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.097
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqv 216
                 + h+  + +  f p  t la    d +v+ + v
  CDO72320.1 160 QGHTnFVFCVNFNPSSTLLASGGFDETVRVWDV 192
                 4565479999*********************98 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 7.2e-06
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkeesdeqfWrfaitgadnnselklWscelWtClqti 283
                  hs  ++  +f  dGt +a +++dG+++ +     d+e+ +CL      d  +++s +     k +++    rf+  ++ ++s ++lW++++ +C++t 
  CDO72320.1 203 AHSdPVTAVTFNHDGTLIASCAMDGLIRIW-----DTESGQCLKTLAD-DDNPICSHV-----KFTPN---SRFI-LASTQDSTIRLWNTQTSKCVKTY 286
                 455468999*******************98.....678999**98765.667888744.....22232...2565.56778899***********9996 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0049         8       3      62 ..      82     141 ..      80     162 .. 0.86
   2 !   18.1   0.0     8e-07    0.0013       3      93 ..     166     259 ..     164     296 .. 0.74
   3 ?    3.7   0.0      0.02        32       7      48 ..     299     340 ..     291     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0049
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlD 62 
                 i s+ +s++g++++  + d+ +++ + e+++++  +e+ ++ +  v   ++  +l  + D
  CDO72320.1  82 ISSVKFSPDGKMLASCAADKLIKLWDAENGDIIHTFEGHSEGISDVAWSSNGEFLASASD 141
                 67999************************************9999888888888876655 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8e-07
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllenee..evenekieedistvkvidd 93 
                 ++ +++++ ++l++ Gg d++++v ++  +++   +   +d v  v + +d  li  +++DG i   + e ++  ++   + +   s vk + +
  CDO72320.1 166 VFCVNFNPSSTLLASGGFDETVRVWDVARGKTLKTLPAHSDPVTAVTFNHDGtLIASCAMDGLIRIWDTESGQclKTLADDDNPICSHVKFTPN 259
                 789*********************************************8887477789******998888888333333333334466666544 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.02
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvsivesfedSvifv 48 
                 d+ +  + i+ G++d k+ + +l++ e+v+++++ +d vi v
  CDO72320.1 299 DFAPGRKHIVSGSEDMKVYLWDLQTREIVQVLDGHRDVVIAV 340
                 6666678899***************************99965 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.4e-05      0.14     283     347 ..      55     119 ..      34     148 .. 0.80
   2 !    7.2   0.1    0.0016       2.6     330     354 ..     315     339 ..     300     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
  RAB3GAP2_N 283 keekkkpkvepaaplslrfgLkDskRegesivlsPsgrlaavtDsLgRVlLlDvqagvvvRlWKG 347
                 +++  kp++    + ++ + L+ + R++ s+  sP+g+++a + +   + L+D+++g ++  + G
  CDO72320.1  55 PPPVPKPESRYVPNYRPTYMLSGHSRSISSVKFSPDGKMLASCAADKLIKLWDAENGDIIHTFEG 119
                 44455555555666788899****************99888665555599************999 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0016
  RAB3GAP2_N 330 RVlLlDvqagvvvRlWKGYRDAqcg 354
                 +V L+D+q++++v++ +G RD  ++
  CDO72320.1 315 KVYLWDLQTREIVQVLDGHRDVVIA 339
                 79*******************9775 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05     0.027     117     170 ..      91     147 ..      75     190 .. 0.71
   2 ?    2.1   0.0      0.05        82     126     165 ..     185     226 ..     176     248 .. 0.84
   3 ?   -1.5   0.0       0.6   9.7e+02      35      62 ..     251     279 ..     233     318 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                    XXXXXXXX.XX.XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 117 GalLgvks.egsvsfYDweqgklvrridvkk..vknVvwsddgelvalvskdtvyil 170
                    G +L  +  ++ + ++D e+g +++  + ++  +++V ws +ge++a +s+d+++ l
     CDO72320.1  91 GKMLASCAaDKLIKLWDAENGDIIHTFEGHSegISDVAWSSNGEFLASASDDKTVRL 147
                    66666554155899*************965336****************99998765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.05
                    X.XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 126 gsvsfYDweqgklvrridvk..kvknVvwsddgelvalvskd 165
                    ++v ++D+++gk+++ +  +  +v+ V  + dg+l+a ++ d
     CDO72320.1 185 ETVRVWDVARGKTLKTLPAHsdPVTAVTFNHDGTLIASCAMD 226
                    458899**********9977436*************988654 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.6
                    XXXXXXXXXXXXXXX.XXXXXXXXXXXXX CS
  Coatomer_WDAD  35 pqslshnpngrfvlV.cgdgeyiiytala 62 
                      ++++ pn rf+l   +d+++ + +++ 
     CDO72320.1 251 CSHVKFTPNSRFILAsTQDSTIRLWNTQT 279
                    46788999999999965666666655333 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.38   6.2e+02     233     257 ..      83     107 ..      75     116 .. 0.83
   2 ?    2.9   0.1     0.036        58      48      72 ..     126     150 ..      84     164 .. 0.80
   3 !    5.3   0.0    0.0064        10     211     260 ..     145     194 ..     131     207 .. 0.75
   4 !    5.4   0.0    0.0059       9.7     229     273 ..     205     249 ..     200     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.38
      Nbas_N 233 fkmslspdgtllavihfsgklsiwd 257
                   + +spdg +la       + +wd
  CDO72320.1  83 SSVKFSPDGKMLASCAADKLIKLWD 107
                 567789*******999888888887 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.036
      Nbas_N  48 rvawshdctllayaestgtvrvfdl 72 
                  vaws +  +la a    tvr++ l
  CDO72320.1 126 DVAWSSNGEFLASASDDKTVRLWSL 150
                 6999999999999999999999877 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0064
      Nbas_N 211 rgllkllslklysrkaeekdgvfkmslspdgtllavihfsgklsiwdips 260
                   l+ l ++ +    +   + vf + + p  tlla   f   + +wd+  
  CDO72320.1 145 VRLWSLETFAVVRVLQGHTNFVFCVNFNPSSTLLASGGFDETVRVWDVAR 194
                 344445555555555677889**************************975 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0059
      Nbas_N 229 kdgvfkmslspdgtllavihfsgklsiwdipslkqrgeweqeeqp 273
                  d v  +++  dgtl+a   + g + iwd  s +   +  ++++p
  CDO72320.1 205 SDPVTAVTFNHDGTLIASCAMDGLIRIWDTESGQCLKTLADDDNP 249
                 577788889999999999999999999999887766666666666 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.085   1.4e+02     299     347 ..     178     229 ..     169     233 .. 0.67
   2 ?    9.6   0.0   0.00024      0.39     295     349 ..     220     274 ..     212     276 .. 0.89
   3 ?   -0.6   0.0      0.29   4.7e+02     182     215 ..     296     329 ..     278     341 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.085
  PALB2_WD40 299 ltsG....aiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsv 347
                 l+sG    ++ vWd+ +g+    l+++sd   + v + +  + + +   dG +
  CDO72320.1 178 LASGgfdeTVRVWDVARGKTLKTLPAHSDPV-TAVTFNHDGTLIASCAMDGLI 229
                 5555344478999999999999999988864.556666655555555566665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00024
  PALB2_WD40 295 aaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlv 349
                 +a+    G i +Wd   g+c   l+   +   s v+++  +  +la  +d ++ +
  CDO72320.1 220 IASCAMDGLIRIWDTESGQCLKTLADDDNPICSHVKFTPNSRFILASTQDSTIRL 274
                 667777899******************99********************999865 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.29
  PALB2_WD40 182 afaeveGekdallgttvlnniviWnlktGqllkk 215
                  fa+    +  +++ + + ++ +W+l+t  +++ 
  CDO72320.1 296 IFADFAPGRKHIVSGSEDMKVYLWDLQTREIVQV 329
                 5777777777888888899999999999877765 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00018       0.3     292     332 ..     109     150 ..      77     153 .. 0.75
   2 ?   -0.1   0.0       0.1   1.7e+02     237     275 ..     228     269 ..     198     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00018
                 XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS
        IKI3 292 rhgefslrlekeeeevqsLaWsadSevLavrledr.vqlwti 332
                 + g++  ++e ++e + ++aWs+++e La +  d+ v+lw  
  CDO72320.1 109 ENGDIIHTFEGHSEGISDVAWSSNGEFLASASDDKtVRLWSL 150
                 457888889999******************888877****86 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.1
                 XXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
        IKI3 237 alrvyere.ga.LdsvsekvdgleeaLaWrPsGsli.Astqr 275
                  +r+++ e g+ L++ +++ + + +++++ P+   i Astq 
  CDO72320.1 228 LIRIWDTEsGQcLKTLADDDNPICSHVKFTPNSRFIlASTQD 269
                 577777776667777777777777777777777655355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 2314.84
//
Query:       CDO72321.1  [L=258]
Description: hypothetical protein BN946_scf184977.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-23   83.0   0.0    3.1e-23   82.4   0.0    1.3  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   1.7e-27   3.1e-23       3     140 ..      69     226 ..      67     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 1.7e-27
  CSN8_PSD8_EIF3K   3 kaelytniLlkaLtqndladfrlllkrlpaaiqqs...............deeiqklltLetlLeeanyakfwstlksd...dlsadltadvag 78 
                      +++++ niL+kaLt+ + +df+l+  +l +                     + +  l++L  lL+++++ +fw++++s    +l +++t  + g
       CDO72321.1  69 NPDVVINILIKALTSAPFPDFSLCISLLDERPASAtstaaaanpdepdplPQLLPVLTQLHGLLQQCRFPRFWALYRSAavePLRDNYTVECVG 162
                      678999********************9988777777889*********999999999******************99972225566******** PP

  CSN8_PSD8_EIF3K  79 leelvReeiaklvgkaYesIsadvlaelLglssdeelekfvkevgWeldaat..vivpfnpe.ea 140
                      +e++vR+ +++ v+ a++sIs ++l ++L+ls  +el  ++++ gW++da+t  v+vp np+ ++
       CDO72321.1 163 FEDAVRDVAVRAVKAAFTSISRERLGSYLDLS-GTELNAYIEKLGWTIDASTgvVSVPPNPDnQI 226
                      ********************************.****************7661145666776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1839.98
//
Query:       CDO72322.1  [L=613]
Description: hypothetical protein BN946_scf184977.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-56  191.9  13.0    1.9e-56  191.5  13.0    1.1  1  Aa_trans      Transmembrane amino acid transporter protein
     0.0002   20.6   6.6    0.00034   19.8   6.6    1.4  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5  13.0   2.1e-60   1.9e-56       7     371 ..     185     558 ..     179     564 .. 0.91

  Alignments for each domain:
  == domain 1  score: 191.5 bits;  conditional E-value: 2.1e-60
    Aa_trans   7 savlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsylili 105
                 + +ln +   +G G+L+ P Af+ +G+i+G il++ ++++s+yt+ +L+ +     +++r++sY+d+g++++Gp+ + +i++++ ++lf v+v+ + l 
  CDO72322.1 185 KQLLNAVAVLFGIGMLSEPLAFAYAGWIGGSILIIGYGYISCYTAKILAHIVL---EDPRIRSYADIGRKAFGPRSSPLISAIFGLELFTVCVALVTLY 280
                 5678999999*****************************************98...489**************************************** PP

    Aa_trans 106 gdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetv...kkasklkglflaigii 201
                 +d+l+a+++++      s +++ li  +i+ip +++  ls Lsy+S+++++s++ +  i+++    l+k++  g  ++++     + ++++l +a+g +
  CDO72322.1 281 ADSLYAVIPKY------SANTYKLIGLAIFIP-AVMLPLSILSYASIIGIFSLIGI--IGIILFDGLTKYDSPGSLWSPAdtsLGIDNMQELGIAFGLF 370
                 *********85......999************.66667***************864..44444444444444444444444444677788999****** PP

    Aa_trans 202 vFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkss...ilivivnlllvlhlilsfplqlhplrqv 297
                 +  f+ghav++++  +++dps f     ++++++++at +y+++G++GY +FGn+v +++ + l k++    l +++   lv+  ++ f l + pl   
  CDO72322.1 371 MAGFSGHAVIPTLARDMRDPSRFD---EMINWAFVIATGTYAVLGVAGYIMFGNSVSDEFSQDLIKYNvhpSLNTLALWGLVITPLTKFALTARPLNVT 466
                 ************************...8***************************************999999999*********************** PP

    Aa_trans 298 venllikk..................eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkl 371
                 +e ll                       +++  + ++ ++++l  v r++l+++++ ++++vp++a v++++G+t+s+ l+ i P++ +++l
  CDO72322.1 467 LEVLLGIDtsgvaqadahghgtttlpSSSSPLRNAPKALKRTLIAVERTALTLLAVAVSILVPEFASVMAVLGSTFSFVLCIIGPVVAKIAL 558
                 *****888***************999888888888888999999999**************************************9998876 PP

>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   6.6   3.8e-08   0.00034      15     168 ..     193     341 ..     184     430 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.8e-08
  Trp_Tyr_perm  15 tviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAyisggGsilselle 111
                   +  G Gml+ P+a a ag i   +l+i    ++++++ +l+ ++l+ +   s++++ +k +G     ++ + + + l+   vA ++   + l+ +++
    CDO72322.1 193 VLFGIGMLSEPLAFAYAGWIGGSILIIGYGYISCYTAKILAHIVLEDPRIRSYADIGRKAFGPRSSPLISAIFGLELFTVCVALVTLYADSLYAVIP 289
                   56799******************************************************************************************** PP

  Trp_Tyr_perm 112 easgialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllalllskv 168
                   ++s     a++  li  +++ + v+l  ++ ++ + + +f ++  + ++l+ +l+k 
    CDO72322.1 290 KYS-----ANTYKLIGLAIFIPAVMLPLSILSYASIIGIFSLIGIIGIILFDGLTKY 341
                   ***.....4444444444445555555566666666555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4281.48
//
Query:       CDO72323.1  [L=431]
Description: hypothetical protein BN946_scf184977.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-22   79.5   0.3    1.9e-22   78.6   0.3    1.4  1  Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
    2.3e-17   63.5   0.1    2.2e-15   57.0   0.0    2.1  2  Abhydrolase_1   alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.3   2.1e-26   1.9e-22       1      62 [.      80     144 ..      80     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 2.1e-26
  Abhydro_lipase   1 vseiirkhGypveeheVqTeDGYiLtlhRipaknk...svssklekkpvVlLqHGLlasSevwvl 62 
                     ++ +++ +Gy+ eeh+V T+DGY+L+lhR+pak+    ++   +++kpvV+L+HGLl++Sevwv+
      CDO72323.1  80 FQRLCEIFGYEHEEHVVLTKDGYLLGLHRLPAKKGehrTHFGTSTGKPVVYLHHGLLMNSEVWVC 144
                     5789*****************************997776778899*******************8 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   2.5e-19   2.2e-15       1      95 [.     127     236 ..     127     243 .. 0.90
   2 !    4.4   0.0    0.0027        24     189     230 ..     298     350 ..     290     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.5e-19
                    SEEEEE-STTTCGGGGTTGHHH.HHHHHT....TSEEEEEEETTSTTSSSTTTGB...........CHHSHHHHHHHHHHHHHHCTTSSEEEEEET CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaergla.paLakd....gfdvillDlrGvgySspapacin..........ddygtasvaddldrildalgddkltlvGhS 81 
                    pv+ ++hGl+++s+vw ++  + + La++    gfdv+l + rG+ yS++++  ++          d++   ++ d++ +il  ++  +l +vG+S
     CDO72323.1 127 PVVYLHHGLLMNSEVWVCLTHPeRSLAFTlvelGFDVWLGNNRGNKYSKKSIHYNPntpkfwdysiDEFAWHDIPDSISYILSVTKEPSLSYVGFS 222
                    79*************998433312444448888*********************99**************************************** PP

                    HHHHHHHHHHHHHG CS
  Abhydrolase_1  82 mGGmialayaaeyp 95 
                    +G+++a+a+++ +p
     CDO72323.1 223 QGTAQAFAALSIHP 236
                    ***********996 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0027
                    HHHHHHCCHHHHHHHHHC.......THHHHS.......EEEEEEETTCSSSCH.HHH CS
  Abhydrolase_1 189 ieqwpttdsaklllrlre.......lknvla.......ptlvisgtsDplvpp.kal 230
                    + +w +  +++++++++        +            p+++++g+sD lv++  +l
     CDO72323.1 298 VVHWFQIMRNAKFQMYDDdvqrvvlV----RrapappaPIVLLYGDSDSLVDIdVML 350
                    67788888888888888765555553....04444788**************94444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3028.03
//
Query:       CDO72324.1  [L=145]
Description: hypothetical protein BN946_scf184977.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-22   77.7   0.1    1.2e-21   77.0   0.1    1.3  1  WSD       Williams-Beuren syndrome DDT (WSD), D-TOX E motif


Domain annotation for each model (and alignments):
>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   6.7e-26   1.2e-21      20      99 .]      15      93 ..      11      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 6.7e-26
         WSD 20 kgtgrlfveepsegdievllekreekesekrr.eeeeeeevleegewavysskeqleeLiesLnprgvREsaLkealekek 99
                +gtgr+fv++pse+d+evl +++e   ++krr eee+ee++l++gewavy++ ++++e++++Lnp+gvRE aLk+a +k++
  CDO72324.1 15 YGTGRIFVQGPSEFDVEVLRRREED--VDKRRrEEEGEEGMLDVGEWAVYNDVDEVREFVDWLNPKGVRELALKNAFTKWW 93
                89***********999999777554..555555**********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1090.54
//
Query:       CDO72325.1  [L=662]
Description: hypothetical protein BN946_scf184977.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-31  108.3   2.3    1.2e-25   90.0   0.6    2.9  2  WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodel
    1.2e-13   51.2   0.1    1.3e-12   47.9   0.0    2.5  2  DDT              DDT domain
    1.3e-06   27.8   0.0    3.4e-06   26.4   0.0    1.7  1  WHIM1            WSTF, HB1, Itc1p, MBD9 motif 1
  ------ inclusion threshold ------
      0.023   14.8   0.2      0.044   13.9   0.2    1.5  1  DDHD             DDHD domain


Domain annotation for each model (and alignments):
>> WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.6   2.6e-29   1.2e-25       1      78 [.      29     106 ..      29     113 .. 0.97
   2 !   16.8   0.0   1.6e-06    0.0072      74     101 .]     124     151 ..     111     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2.6e-29
  WAC_Acf1_DNA_bd   1 evfvikqTgEvftdyeeylerldlykqkvftceitgksnltyfeAlesEkeaskeleekfpealkkpvlelvqfstrs 78 
                      evf++++TgE+f++ye+y++r+++y+ k+f+ce+tgks+l yf+AlesE++++++++++fp++lk++vl+ vq +t s
       CDO72325.1  29 EVFYLAETGEIFETYEAYAARMSFYRLKQFQCEVTGKSGLDYFQALESERQEARTMHSRFPDQLKAAVLKAVQWRTFS 106
                      79***********************************************************************99876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.6e-06
  WAC_Acf1_DNA_bd  74 fstrsrlddLvedvyeelkerffvgEeV 101
                       + + r+d+Lve vy+++k+r++++E+V
       CDO72325.1 124 EEVMGRIDHLVEAVYDRFKDRYYPDEKV 151
                      556789********************98 PP

>> DDT  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.28   1.3e+03      14      35 ..     103     128 ..     102     137 .. 0.84
   2 !   47.9   0.0   2.8e-16   1.3e-12       5      57 ..     436     488 ..     432     490 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.28
         DDT  14 hvFgelLgL....spftlddlesALl 35 
                 ++F+  L L    +p+ +++le+++ 
  CDO72325.1 103 RTFSIQLWLtspsNPIMFSTLEEVMG 128
                 588888888999999********996 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 2.8e-16
         DDT   5 dlLmvweFLhvFgelLgLspftlddlesALlsqdpmgpseLlaeihiaLLkal 57 
                  +Lm+w+F  v+g++L++spft+dd+ +AL ++  + p++Ll+eih  L+  l
  CDO72325.1 436 AFLMTWNFVVVYGQPLHISPFTMDDFDAALRHSLIEPPCQLLSEIHATLIYNL 488
                 68*****************************9999878*********998665 PP

>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   7.6e-10   3.4e-06      13      46 .]     607     640 ..     600     640 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 7.6e-10
                 CSTCCCS-HHHHHHHHHHHHHHHCCC-CCHHHHH CS
       WHIM1  13 kggYyeLspeeklkiLkiLcdlllsssavReeie 46 
                 k+ Yy L+p +++ iL ++c+l++ss+a+  ++e
  CDO72325.1 607 KQLYYKLPPKDRVDILAFMCNLAVSSKAIHMHME 640
                 566***************************9998 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   9.8e-06     0.044      72     164 ..     294     390 ..     281     514 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.8e-06
        DDHD  72 lkPvsiprykrrkllhlelkesltsigaalkqkvsglvsslsa....llnrslelaeeesaslaessksherasesskasqeskaaesstasssaks 164
                 +kP    ry  +  + +e++++++++++  ++k ++++++ ++      +r  + ae+e+ ++a +++++++a+e+ ++ q+ k+++++ a++++k+
  CDO72325.1 294 VKPAIAARYGVNTVMPEEIRKGVENLKKGESDKRKKIWEEKEGpaskRQKRAAAAAENEKILQAIAEQREREAREKAEHAQRAKEESERLAAEKKKK 390
                 6788888888899999************************994433333444444455555555555444444444444444333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1920  (0.107089); expected 358.6 (0.02)
Passed bias filter:                      878  (0.0489709); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 4340.17
//
Query:       CDO72326.1  [L=713]
Description: hypothetical protein BN946_scf184977.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4950.36
//
Query:       CDO72327.1  [L=366]
Description: hypothetical protein BN946_scf184977.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-10   39.4   0.1    1.7e-09   38.5   0.1    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
  ------ inclusion threshold ------
       0.03   14.3   0.6       0.13   12.3   0.5    2.1  2  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.1   1.9e-13   1.7e-09      50     120 .]      44     112 ..       2     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.9e-13
                   EESS.HHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  50 aysd.leelladpeidavivatpngtheelakaaleagkhvllEKPlattveeakelvelaekkgklvsvgy 120
                   ay++ +++l+     davi+ tp +th+ +a+ a+e+g hvl+ KP +  +    el+e+a+k++++++v++
    CDO72327.1  44 AYKEaIDKLS---PGDAVIIFTPDSTHYPIALYAIEHGLHVLVTKPAVQLLHHHVELIEAAKKHNVVCFVEH 112
                   3333333333...479****************************************************9986 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   1.5e-05      0.13       9      61 ..     130     179 ..     126     272 .. 0.76
   2 ?   -0.0   0.1     0.096   8.6e+02      37      55 ..     251     269 ..     218     324 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
                     TSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSE CS
  GFO_IDH_MocA_C   9 lGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqp 61 
                     lGe++ ++  +  +++++  ++r +++  k++ ++++l++H+iD+  w++   
      CDO72327.1 130 LGEFNFFS-AWMSQPKSQLETFRAWAG--KDSDISYYLSSHHIDIHCWIMQDK 179
                     56666665.566667777788888888..8****************9999653 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.096
                     HCSTSHHHHTCHHHHHHHH CS
  GFO_IDH_MocA_C  37 kksgGvlgdlgiHdiDllq 55 
                     +++g + +d ++  +D+++
      CDO72327.1 251 AEKGEINVDQAHRGYDVVH 269
                     3444444444444455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2455.87
//
Query:       CDO72328.1  [L=440]
Description: hypothetical protein BN946_scf184977.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-37  127.6   0.6    4.6e-37  126.6   0.6    1.6  1  Cyclin_N  Cyclin, N-terminal domain
    1.7e-07   31.3   0.2    4.8e-07   29.9   0.2    1.9  1  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.6   5.2e-41   4.6e-37       1     126 [.      81     208 ..      81     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 5.2e-41
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS..---HHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeis..ppkled 97 
                 +i  +++e e++++ +   +dqqpe++++mR+ l+d+lve++  f+l+petl+l++n++dR++sk+ v  ++ qlvg+++L++AaK+e+++  +p+++d
  CDO72328.1  81 EIRAYMHEMERNTMCSIASMDQQPEIRWHMRPCLVDFLVELHFLFRLRPETLYLTLNIIDRYVSKRVVYVKHYQLVGCAALWIAAKFEDAKerVPTVQD 179
                 57889**********************************************************************************998888****** PP

                 HHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  98 lvyitdeafteeeilemErliLetLnfdl 126
                 l+ +++e+++e+ +++mE ++L+t++++l
  CDO72328.1 180 LAQMCQETYDESAFIQMEGHVLSTIQWSL 208
                 ***************************98 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.2   5.3e-11   4.8e-07       1      70 [.     211     273 ..     211     321 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 5.3e-11
                 --HHHHHHHH.HCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHH CS
    Cyclin_C   1 ptplsFlrrf.lkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetleh 70 
                 pt+ s+lr + +      e+++++++a++l+e+tl   +f +yp S iA +al lar   +++        
  CDO72328.1 211 PTAESWLRILcCGP--VIEEQKVQHVARFLMEITLFYREFCQYPSSAIALGALTLARFLCGKG------RR 273
                 8999***9984444..44455************************************996322......22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3021.69
//
Query:       CDO72329.1  [L=1135]
Description: hypothetical protein BN946_scf184977.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        0.1   12.9   0.2       0.21   11.9   0.2    1.4  1  Importin_rep_5  Importin repeat


Domain annotation for each model (and alignments):
>> Importin_rep_5  Importin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   1.1e-05      0.21      27      52 ..      20      45 ..      11      45 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
  Importin_rep_5 27 nipkvvdsVvqALeaksiqGktAekv 52
                    + +  vdsVv A++++s+q++ A+ v
      CDO72329.1 20 STSDAVDSVVDAVAKASLQDEVATDV 45
                    56789******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 8041.37
//
Query:       CDO72330.1  [L=1228]
Description: hypothetical protein BN946_scf184977.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-179  598.8   0.0   1.6e-179  598.4   0.0    1.2  1  RdRP      RNA dependent RNA polymerase


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  598.4   0.0  8.7e-184  1.6e-179       1     586 []     435    1029 ..     435    1029 .. 0.93

  Alignments for each domain:
  == domain 1  score: 598.4 bits;  conditional E-value: 8.7e-184
        RdRP    1 vtptriilegpeleksnrvlRrfkegsdrFlrvkfpdedge..rldse.dgeellkervkkvlkegiviagrkfeflafsdsqlrehsvwffapf.. 92  
                  vtpt+++legp +e+snr++R++   +d+Flrv+f+de++   r+d+e dg++++ +rvk +l +g++iag +f fla+s+s+l+eh vwf++pf  
  CDO72330.1  435 VTPTTMLLEGPFPERSNRIMRKYYTSQDSFLRVSFQDENRLqlRFDREvDGRDFIARRVKPILLNGLTIAGAHFDFLAYSQSALKEHAVWFVKPFrh 531 
                  79************************************99899****************************************************88 PP

        RdRP   93 .eeeger..isaeeirkwlgdf......enisqsvaKyaaRlglalSttrptvvkvereqiiieeidDvkneekdiylftDGvGliSrelarkiakk 180 
                   +e+g +  ++ae+i+k +g+f      +++++++a+yaaR+++a+++t+++ ++v+  qii  +  D+k +   iy+ftDGvG+iS++la++i+++
  CDO72330.1  532 rDEQGYTtiVDAETIIKGIGTFknlsfdRDLMRCPARYAARISQAFTATDAS-ISVDVGQII--QGSDIK-DPSGIYSFTDGVGTISPQLAKEIWRA 624 
                  733443468*************99988558899******************8.998999977..666875.34679********************* PP

        RdRP  181 lglkk.....aeelPsafQiRigGaKGvlavdkrlkpekielrpSqiKfkseeddsekrtleivkvsskpkpayLnrqlikiLedlgvpeevflell 272 
                  l+ k+     ++++P a+QiR++G+KG+l+vd rl+ + i lrpS++Kf+++    e++t+ei+++++kp  +yLnr+li++L+ lg+p+ev++ ++
  CDO72330.1  625 LQEKRrrgrrDRTYPRAYQIRFQGSKGMLSVDYRLAGRAILLRPSMVKFEAP----ESLTIEIARAFDKPGIYYLNRPLIMLLDGLGIPHEVLQTMQ 717 
                  ***99*****8899*********************5578**********777....569************************************** PP

        RdRP  273 kealeelrealkdagaaaell.kka.gdpskleellaelldsgfdpseldpflrsllkalvkeslrklkekarIpvpksatllgvaDetgvLkegev 367 
                  ++a++e++ + ++ + +a+ll  ++ g +++l++ +  l+++g+   + d+f++++++ +++++lr+lk++arIpvp+++tl+gvaD +g+L+ege+
  CDO72330.1  718 DNAVREVQASVQSLERSARLLeGHGlGASFRLTSAMLGLHKLGLGALDGDHFWEQMMEFAMNHVLRELKHHARIPVPNGWTLVGVADVHGYLREGEI 814 
                  *********************6556899****************99988************************************************ PP

        RdRP  368 fvqlsealdqedeksktkllkgdvlVtRnPalhpgDiqvvkav.dvp.....elrhlkdviVFstkGdrslaselsGGDlDGDkywViwdpelefap 458 
                  f +++++     ++++   l+g+ l++R+P++hpgD+qvv+a+ ++p     e ++l++++VFs kG r+l+s+l+GGDlDGD y+V+  pel   p
  CDO72330.1  815 FACIDSP-----DNNRLVYLEGPTLISRSPTIHPGDVQVVRAIgRPPpgspfERESLRNTVVFSIKGARPLPSCLGGGDLDGDVYNVTSMPELL--P 904 
                  *555553.....333566777**********************87757**99999*************************************97..5 PP

        RdRP  459 akpsneepadyeea.kpkeldrevtvediadffveymksdvlGlisnahlaiadq.eegiddpkclkLaelhskaVDypKtGipvdkkeiprelkkp 553 
                    ++ +++a+ye + k+k +d+e+t+ d+adf++ey++sd+lG+i   +l+iadq   gi dp+clkLa lhs+aVDypKtG pv   eipr ++  
  CDO72330.1  905 R-QT-YPAANYE-PaKRKLVDHESTMADVADFVAEYITSDTLGIIGSTWLIIADQsTLGILDPDCLKLAALHSDAVDYPKTGQPVPVGEIPRLKM-- 996 
                  4.45.89*****.76889999*****************************************************************9999**987.. PP

        RdRP  554 kekPdfkekekkekakkpyykskkilgkLyrev 586 
                  k+kPd+ + e+ ++ ++++y+s+++lgkLyr++
  CDO72330.1  997 KAKPDWSAPETVTEDHSNFYESSRALGKLYRSI 1029
                  789***99998777789**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 7750.13
//
Query:       CDO72331.1  [L=104]
Description: hypothetical protein BN946_scf184977.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-11   43.1   0.1    3.6e-11   42.6   0.1    1.3  1  LSM       LSM domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.018   14.7   0.0    1.4  1  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1     4e-15   3.6e-11       7      65 ..      39      99 ..      33     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4e-15
                TTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET..EEEEEEEEEEEGGGEEEE CS
         LSM  7 inkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk..ekrklglvliRGnnivli 65
                ++ +v++ l+n+++l  ++k+fD++ N++ ++    +++k   ++r+++++++RG++++l+
  CDO72331.1 39 NHTQVLISLRNNKKLLARVKAFDRHSNMMWTEMPKGKNKKPvnKDRFISKMFLRGDSVILV 99
                5789*************************99998877777799****************98 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     2e-06     0.018       5      37 ..      32      64 ..      30      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-06
                HHHHHHHCT-EEEEEETTS-EEEEEEEEE-SSE CS
         Hfq  5 fLnqlrkekipvtifLvnGiklkGviksfDnft 37
                +L+q+ +++++v i L n  kl  ++k+fD ++
  CDO72331.1 32 VLQQAVRNHTQVLISLRNNKKLLARVKAFDRHS 64
                79****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 798.47
//
Query:       CDO72332.1  [L=628]
Description: hypothetical protein BN946_scf184977.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-122  407.3   0.0   3.3e-122  407.3   0.0    2.1  2  Pescadillo_N  Pescadillo N-terminus
      5e-08   33.3   0.0    1.1e-07   32.1   0.0    1.7  1  BRCT_2        BRCT domain, a BRCA1 C-terminus domain
     0.0014   19.0   0.0     0.0031   17.9   0.0    1.6  1  BRCT          BRCA1 C Terminus (BRCT) domain
     0.0015   18.8   0.0     0.0039   17.5   0.0    1.7  1  LIG3_BRCT     DNA ligase 3 BRCT domain
  ------ inclusion threshold ------
       0.11   12.6  26.7        3.9    7.5   0.0    2.4  2  YL1           YL1 nuclear protein


Domain annotation for each model (and alignments):
>> Pescadillo_N  Pescadillo N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.3   0.0  9.2e-126  3.3e-122       1     264 [.       6     269 ..       6     277 .. 0.98
   2 ?   -7.7  10.2         5   1.8e+04      36     106 ..     552     621 ..     549     627 .. 0.67

  Alignments for each domain:
  == domain 1  score: 407.3 bits;  conditional E-value: 9.2e-126
  Pescadillo_N   1 kkkkegeakkyitrkqalkkLqlslkdFRrLCilKGiyPrepkkkkkankgstaaktyYyakdikfLlhepilekfreikafakklkkalakkekek 97 
                   +k+k+g+ak y+tr++a+kkLq+sl+dFRrLCilKGi+Prep+++kkankgs+a++ +Yyakdi++L+hep+l+k+re+kafakkl +al+++e+++
    CDO72332.1   6 QKGKAGAAKAYMTRSAAVKKLQCSLADFRRLCILKGIFPREPRNRKKANKGSSAPTNFYYAKDIAYLAHEPVLRKLREHKAFAKKLARALGRGEWSS 102
                   699********************************************************************************************** PP

  Pescadillo_N  98 akrleknkpkykldhiikeRYPtfidAlrdldDaLsliflfatlpktkkikekliekcerlaeefqayviksrslrkvFlSiKGiYyqaeikgqkvt 194
                   ak+le+nkp y+ldhiikeRYPtf+dA+rd+dDaL++iflfa+lp+++k++ +l+e+c rla+e+q yv++++slrkvFlSiKG+Yyqae+ +q+vt
    CDO72332.1 103 AKSLEDNKPVYRLDHIIKERYPTFVDAVRDIDDALCMIFLFASLPSDSKVSPSLVENCARLAAEWQLYVMHTHSLRKVFLSIKGVYYQAEVFDQTVT 199
                   ************************************************************************************************* PP

  Pescadillo_N 195 WlvPykfaqklekdvdfkvmltflefYetllkfvnfkLykslnlkyppkldeekdekaaelealsleeka 264
                   WlvPy+f+q++++dvd++vmltfle+Y+tll+fv fkLy++ +l ypp ld++kd  aa + a++l+e +
    CDO72332.1 200 WLVPYQFTQTIPTDVDVRVMLTFLELYQTLLGFVFFKLYTDAGLVYPPPLDTQKDDGAAGVGAFNLQEAK 269
                   ****************************************************************999876 PP

  == domain 2  score: -7.7 bits;  conditional E-value: 5
  Pescadillo_N  36 GiyPrepkkkkkankgstaaktyYyakdikfLlhepilekfreikafakklkkalakkekekakrleknkp 106
                   G + +e kk +k+ k+  aa     ++d++ ++  +  +k+ e+  + +k k+a++++  e+ kr  +++ 
    CDO72332.1 552 GTFEKEAKKAQKKAKKAEAAAEEEAERDMNKMMMSNKQRKLYERMKYGQK-KRAEERQTLEQKKRAIEKEK 621
                   66778888877777777777777888888888888777777776666655.45666666666666555544 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.2e-11   1.1e-07       2      81 ..     367     462 ..     366     466 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.2e-11
      BRCT_2   2 sklFeglrFYindaepspsreklkklIeknGGev...........vetitsavyiviaesneee........laekrkrrvvspkyIkdCikkgkllpl 81 
                 +klF +++F++     ++sr  ++ +++++GG++            ++ +++ ++vi+ +   +        ++++r+r++v+p+++ dC+++gk+l  
  CDO72332.1 367 AKLFAPYTFWL---SRETSRPIFEFIVRSFGGRIgwpatsgsgspFDENDESITHVIIDRPLVQrqneseeeKERRRRRKYVQPQWVVDCVNAGKILLE 462
                 69*********...7779****************88777666665222244567777777666677888899999********************9854 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.6e-07    0.0031      10      79 .]     374     454 ..     366     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.6e-07
                 EEEEEESTSSHHHHHHHHHHHHTTCEE...........ESSCSTTSSEEEESSS....HSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT  10 kfvitgvldnftrdeleelikehGGkv...........ttevskktthlvvgep....esrslkylealklnipivheewlldci 79 
                 +f +     ++ r+  e +++++GG++            +e+++ +th++++ p      + ++ ++  ++  + v ++w++dc+
  CDO72332.1 374 TFWL---SRETSRPIFEFIVRSFGGRIgwpatsgsgspFDENDESITHVIIDRPlvqrQNE-SEEEKERRRRRKYVQPQWVVDCV 454
                 5555...567889999**************************************9886333.557888889999**********5 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0039      38      79 ..     411     457 ..     405     459 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
   LIG3_BRCT  38 ekekeaTHvvvskke.....eskkekeksknakaVtaewiwesIkkr 79 
                 e+ +++THv+ + +      es++eke   + k V ++w+ ++++++
  CDO72332.1 411 ENDESITHVIIDRPLvqrqnESEEEKERRRRRKYVQPQWVVDCVNAG 457
                 67789*****99665788889999999999**************976 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0011       3.9      31      83 ..     323     442 ..     318     451 .. 0.79
   2 ?    5.5  23.5    0.0045        16      56     187 ..     496     623 ..     484     627 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
                 xxxxxxxxxxxxxxxxx................................................................xxxxxxxxxxxxxx.... RF
         YL1  31 eedDeefeseeeeeeee................................................................nsDsdfdsdeedee.... 61 
                  edDeef++++ e+ e+                                                                 s s fd+++e       
  CDO72332.1 323 NEDDEEFVEDNTEDPEDhapaapayttatlptlktlstiprstsaklfapytfwlsretsrpifefivrsfggrigwpatsGSGSPFDENDESIThvii 421
                 59******9999888889*************************************************************99777777666664447887 PP

                 .....xxxxxxxxxxxxxxxxxxxxxx RF
         YL1  62 .....sdeeedeeegekelerqerkkr 83 
                      +   ++e+e+eke    +r++r
  CDO72332.1 422 drplvQ--RQNESEEEKE----RRRRR 442
                 755433..3333333332....22222 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0045
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  56 deedeesdeeedeeegekelerqerkkr.kkekkkrkaqkkkskkkkkkqkkkkkkkidp........qakeprpkkkseraswlpaeslltpkrRkss 145
                 +eede     e+ e++ +e+ ++e ++r +k+  k+     +++++ +++ ++ ++ ++         +   ++ kk +++a++ +a++++++ +R   
  CDO72332.1 496 EEEDEV----EEMEQEGAEVSEEEGAARpAKSVLKA-----AAAAEDDAALHAAEVAAEAagvdygtfE---KEAKKAQKKAKKAEAAAEEEA-ERDMN 581
                 222222....22222224455666666632222222.....2222222333334443333444433331...333444455555555555344.48888 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 146 Rastvenkeqleerlkereerrkkilermrkkaarkkkkkke 187
                 +     ++++l+er+k  +++r++ +++ ++k++  +k+kk+
  CDO72332.1 582 KMMMSNKQRKLYERMKYGQKKRAEERQTLEQKKRAIEKEKKR 623
                 888888999999*99999888888777666666555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2405  (0.13414); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 4006.20
//
Query:       CDO72333.1  [L=1441]
Description: hypothetical protein BN946_scf184977.g30, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-33  114.1   0.0    9.5e-33  113.4   0.0    1.3  1  Sec7      Sec7 domain
    6.5e-13   49.1   0.0    1.2e-12   48.2   0.0    1.5  1  PH_9      Pleckstrin homology domain
    3.8e-09   37.0   0.0    8.6e-09   35.9   0.0    1.6  1  PH        PH domain


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   1.6e-36   9.5e-33      44     179 ..     565     697 ..     550     701 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.6e-36
                 CCS-HHHHHHHHC.SGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SSHHHHHHHHHHHHHHHHHTTCTCG-SHHHHHHHHHHHHHHHHHHC- CS
        Sec7  44 pgldkkklGeylg.kekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgEaqkierilekFaekyfeqnpevfenadavfvLaysiimLntdlhn 141
                 + ++k+++ ++l+ + ++f+ + l+++++ f+f g +ld AlR++l ++ lp E q+i+r++e+Fa +y++ np++f++ d  ++La+s+imL+td+ n
  CDO72333.1 565 EAVSKAEVASILAsSADAFHARALRAYIERFNFVGDPLDVALRKLLMDVGLPRETQQIDRVIEAFAARYVQCNPNLFSSDDHPYILAFSLIMLHTDAFN 663
                 567899999999944559********************************************************************************* PP

                 TTSCCS--HHHHHHCTTTTBTTB---HHHHHHHHHHHH CS
        Sec7 142 pqvkkkmtledFiknnrgindgkdlpeefLeeiYdsIk 179
                 ++ k+km++ d+ikn+r       +  e+L+  Yd+I 
  CDO72333.1 664 KSNKRKMSKPDYIKNTR-LP---GVAPEVLDCFYDNIV 697
                 ****************9.33...378888888888885 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0     2e-16   1.2e-12       2     119 .]     838     961 ..     837     961 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 2e-16
        PH_9   2 kegivqrkllleskgkktplkkrgWkevyavlkklvLylykdee.....esesaetedlks...lknakllgkirlhhaLaekasdYkkkshvFrLqta 92 
                 k g v rk  + + g+++   +r+Wke ++ l + +L +++d       +++ ++t         + +++   +++  a+a   + Y++ ++  rL + 
  CDO72333.1 838 KVGLVLRKDDTIEGGRRA--LNRKWKEWCLLLTGSQLLFFRDSAwanniQAQLGRTDGQVIlqqASLPQPDEMMSVRDAIAVFDKSYTRYPNTLRLVMP 934
                 567788888888888888..89********************6655445333333333333333566688999************************** PP

        PH_9  93 dgaeylfqtsdakevqeWvdtiNyvAA 119
                 dg+++l+q++d+ke++eW+++iNy+ A
  CDO72333.1 935 DGRQFLIQAQDEKEMNEWISRINYASA 961
                 ************************987 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.4e-12   8.6e-09       5     104 ..     840     960 ..     836     961 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.4e-12
                 EEEEEETSSSSC.......SEEEEEEEEETTEEEEESST.....TCTTESSEEEEEESTTEEEEEEEC............TTSSSSTSEEEEEESTSSS CS
          PH   5 GwLlkkgsgkkk.......swkkrwfvLkdsellyyknd.....ksekdkepkgsislsncevvevva............tedpkrkfcfelriverng 79 
                 G +l+k+ +  +       +wk+  + L++s+ll+++++        +  +  g + l++++  ++++            ++++  +++++l+++  +g
  CDO72333.1 840 GLVLRKDDTIEGgrralnrKWKEWCLLLTGSQLLFFRDSawannIQAQLGRTDGQVILQQASLPQPDEmmsvrdaiavfdKSYTRYPNTLRLVMP--DG 936
                 5644444444444778889***8888888999************555555555555555555555555555555555532345555555555555..99 PP

                 TEEEEEEESSHHHHHHHHHHHHHHH CS
          PH  80 srtyllqasseeerkeWikaiqsai 104
                  r++l+qa +e e++eWi+ i+ a+
  CDO72333.1 937 -RQFLIQAQDEKEMNEWISRINYAS 960
                 .********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9972.91
//
Query:       CDO72334.1  [L=454]
Description: hypothetical protein BN946_scf184977.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3078.60
//
Query:       CDO72335.1  [L=216]
Description: hypothetical protein BN946_scf184977.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1498.67
//
Query:       CDO72336.1  [L=79]
Description: hypothetical protein BN946_scf184977.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-27   94.6   9.2    1.2e-13   50.8   1.4    2.1  2  Con-6            Conidiation protein 6
  ------ inclusion threshold ------
      0.013   15.7   3.8      0.036   14.3   2.7    2.0  2  ATP-synt_DE      ATP synthase, Delta/Epsilon chain, long alph
       0.31   11.2   1.1        8.5    6.5   0.2    2.1  2  Glyco_transf_8C  Glycosyl transferase family 8 C-terminal
       0.73   10.0   3.0        5.6    7.1   0.7    2.1  2  YhzD             YhzD-like protein
       0.94    9.3   7.0       0.32   10.8   1.6    2.0  2  SpoIIIAH         SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> Con-6  Conidiation protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   1.3   1.4e-16   5.1e-13       1      34 []       3      36 ..       3      36 .. 0.98
   2 !   50.8   1.4   3.5e-17   1.2e-13       3      33 ..      49      79 .]      47      79 .] 0.94

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 1.4e-16
       Con-6  1 dpenvirGyKAtLsNPnvSeeAKehAkeeLeklg 34
                +p+nv+rG+K tLsN n SeeAKe+A e+L++++
  CDO72336.1  3 NPGNVARGLKGTLSNANNSEEAKERAAERLQQME 36
                8*******************************97 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 3.5e-17
       Con-6  3 envirGyKAtLsNPnvSeeAKehAkeeLekl 33
                + v rG+KA++sNP  S+eAK+h+k++Le++
  CDO72336.1 49 GQVERGHKAAISNPKNSDEAKQHSKKVLEDM 79
                7899*************************98 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.7   9.9e-06     0.036       9      32 ..      22      46 ..      17      50 .. 0.77
   2 ?    0.2   0.0      0.27   9.6e+02      10      21 ..      67      78 ..      64      79 .] 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHHHHHHHHS.S-HHHH CS
  ATP-synt_DE  9 eeAkerAeerLeeasddn.idyarA 32
                 eeAkerA erL++ ++++ id  +A
   CDO72336.1 22 EEAKERAAERLQQMEESGeIDSPEA 46
                 9************866655776555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHH CS
  ATP-synt_DE 10 eAkerAeerLee 21
                 eAk+  +++Le 
   CDO72336.1 67 EAKQHSKKVLED 78
                 799999999985 PP

>> Glyco_transf_8C  Glycosyl transferase family 8 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.021        74      21      38 ..      15      32 ..      12      36 .. 0.81
   2 ?    6.5   0.2    0.0024       8.5      19      36 ..      57      74 ..      55      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.021
  Glyco_transf_8C 21 llppktakemkkkaKhlf 38
                     l ++++++e+k++a   +
       CDO72336.1 15 LSNANNSEEAKERAAERL 32
                     779*********996655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0024
  Glyco_transf_8C 19 vpllppktakemkkkaKh 36
                      +  +pk+++e+k+ +K 
       CDO72336.1 57 AAISNPKNSDEAKQHSKK 74
                     56779***********97 PP

>> YhzD  YhzD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.7    0.0016       5.6      22      40 ..      17      35 ..      13      40 .. 0.87
   2 ?    3.1   0.1     0.029     1e+02      24      39 ..      63      78 ..      60      79 .] 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0016
        YhzD 22 eAadDeeAkekGekkLkek 40
                +A++ eeAke + ++L++ 
  CDO72336.1 17 NANNSEEAKERAAERLQQM 35
                699*************864 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.029
        YhzD 24 adDeeAkekGekkLke 39
                ++ +eAk++ +k L++
  CDO72336.1 63 KNSDEAKQHSKKVLED 78
                5789*******99986 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.6     9e-05      0.32     121     149 ..      11      39 ..       8      44 .. 0.89
   2 ?    1.7   0.3     0.055     2e+02     123     141 ..      57      75 ..      47      79 .] 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9e-05
                 HHHHHT-TTS-HHHHHHHHHHHHHHHHHH CS
    SpoIIIAH 121 LqeiinnenlseeekqeAqqqllelteke 149
                 L+ +++n n+see+k+ A ++l++++e  
  CDO72336.1  11 LKGTLSNANNSEEAKERAAERLQQMEESG 39 
                 667899********************975 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.055
                 HHHT-TTS-HHHHHHHHHH CS
    SpoIIIAH 123 eiinnenlseeekqeAqqq 141
                 + i+n+++s+e+kq   + 
  CDO72336.1  57 AAISNPKNSDEAKQHSKKV 75 
                 6788899999988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 539.24
//
Query:       CDO72337.1  [L=234]
Description: hypothetical protein BN946_scf184977.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   11.5  20.6       0.35   10.9  20.6    1.3  1  MARVEL    Membrane-associating domain


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  20.6     2e-05      0.35       6     138 ..       8     137 ..       4     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2e-05
      MARVEL   6 lgilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdi 104
                  +++ ++ +++aii lgl a +++++  l+    +  ++av++av++++++ ++lv++l++  +  +++  +++l++   + +l+l+ + a a    d 
  CDO72337.1   8 RLVVLGWTIFCAIILLGLGAHALSAVGNLALPTFAWSGLAVATAVLTVVTVPAMLVIDLLR--TGAFTSMIVLELAWLSFLGVLFLATGGASAENAAD- 103
                 567888999999************9999999999999**********************86..55577778889999999999999999999999999. PP

      MARVEL 105 scafe...snqysasltvrcgqaqaavafgflavllf 138
                    f+   s+  +a    +c++  aa+afgfl +l+ 
  CDO72337.1 104 ---FWvqcSTWFPAAARAVCNETSAAAAFGFLGWLAL 137
                 ...4455445556677889***************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 1441.86
//
Query:       CDO72338.1  [L=82]
Description: hypothetical protein BN946_scf184977.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-32  109.5   7.7    1.4e-15   57.0   1.6    2.1  2  Con-6        Conidiation protein 6
     0.0044   16.9   2.8      0.024   14.5   0.7    2.0  2  SpoIIIAH     SpoIIIAH-like protein
  ------ inclusion threshold ------
      0.014   15.6   1.1      0.024   14.9   1.1    1.6  1  ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-he


Domain annotation for each model (and alignments):
>> Con-6  Conidiation protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   1.6   2.4e-19   1.4e-15       1      34 []       3      36 ..       3      36 .. 0.98
   2 !   56.4   0.5   3.5e-19   2.1e-15       1      34 []      47      80 ..      47      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.4e-19
       Con-6  1 dpenvirGyKAtLsNPnvSeeAKehAkeeLeklg 34
                +p+nv+rG+KA++sNPn SeeAK++A e+L++l+
  CDO72338.1  3 NPGNVARGLKAAISNPNNSEEAKQRASERLQELE 36
                8*******************************97 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 3.5e-19
       Con-6  1 dpenvirGyKAtLsNPnvSeeAKehAkeeLeklg 34
                ++ nv+ G+KA++ NPnvSe AKeh+ ++L+++g
  CDO72338.1 47 HEDNVASGHKAAIRNPNVSEGAKEHSAQVLDEMG 80
                678******************************8 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.7   3.9e-06     0.024     121     148 ..      11      38 ..       7      44 .. 0.90
   2 ?    3.0   0.1     0.013        76     110     145 ..      44      79 ..      37      81 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-06
                 HHHHHT-TTS-HHHHHHHHHHHHHHHHH CS
    SpoIIIAH 121 LqeiinnenlseeekqeAqqqlleltek 148
                 L++ i+n+n+see+kq A ++l+el+  
  CDO72338.1  11 LKAAISNPNNSEEAKQRASERLQELESS 38 
                 8899*********************976 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHH CS
    SpoIIIAH 110 ReqkrsknketLqeiinnenlseeekqeAqqqllel 145
                 R+   ++     ++ i n+n+se +k+   q l e+
  CDO72338.1  44 RQAHEDNVASGHKAAIRNPNVSEGAKEHSAQVLDEM 79 
                 444455555556789999999999999988887776 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.1   3.9e-06     0.024       9      26 ..      22      39 ..      17      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHHHHHHHHHS CS
  ATP-synt_DE  9 eeAkerAeerLeeasddn 26
                 eeAk+rA erL+e ++++
   CDO72338.1 22 EEAKQRASERLQELESSG 39
                 9************65543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 561.43
//
Query:       CDO72339.1  [L=597]
Description: hypothetical protein BN946_scf184977.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-45  155.3   0.0    1.6e-45  154.7   0.0    1.3  1  RNA_pol_Rpb8  RNA polymerase Rpb8
    6.9e-42  143.6   0.0    9.4e-42  143.1   0.0    1.2  1  TTL           Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb8  RNA polymerase Rpb8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   1.8e-49   1.6e-45       1     139 []     451     597 .]     451     597 .] 0.92

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 1.8e-49
                   EEEEEEEEEE-..TT-SSEEEEEEEESS-S-EEEEEEETTTS---SS-EEEEEEES-----.......-------------....GGS-CGGGSSEE CS
  RNA_pol_Rpb8   1 ediFevkdvdkdgkkfdrVsRieaeseslemeltlDintelyplkegdkltlvlasslsld.......gskdeeeakkswe....geksladkydYv 86 
                   +diF+++++dk+gkkfdrVsR++a+s++++m+ltlD+n+el+pl++g++++l+lassls+        g +de++ ++ w+    g++ l d+y+Yv
    CDO72339.1 451 DDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELFPLQNGQSFALALASSLSRAppgaagtG-DDEDKDRDVWRpdakGRRGLDDDYEYV 546
                   79**********************************************************989888531.44555566663477799********** PP

                   EBEEEEEEEE-ST..T-EEEEEEBTTBEEEEEBSHHTTTSGSSS.EEBEBEE- CS
  RNA_pol_Rpb8  87 myGkvYkieeeeskeekvkvyvSfGGLlmaLegdakklsklevdkrvYlLirk 139
                   myGkvY++++ ++  e v++y+SfGGLlm+L+g+ ++++++ +++ v++L+r+
    CDO72339.1 547 MYGKVYRFDSGSA--EIVTAYASFGGLLMSLTGSFRHMTSIVLGDPVFILLRR 597
                   **********997..9***********************************97 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.0     1e-45   9.4e-42      54     290 ..     131     422 ..      70     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 1e-45
                 HHHHHTTTS--S-B----SS---XX------BSSTHHHHHH.........................HH..SSS-EEEEB--SSB--BTT.......... CS
         TTL  54 laefveeaekeesntwIvKpsasarGkgirvfnkledikki.........................vsqsqkeplvvqkYierPLLidg.......... 117
                 ++  +e  ++++s++wI+Kp++ +rG+g r+f++ e++++i                         v  sq +++v+q+Y+  PLL+d           
  CDO72339.1 131 YDLSEEIEKQDPSKWWILKPGMADRGMGLRLFHTREELQAIfeefeqndsddeesegsdsgrrdtsVVTSQLRHFVIQEYLGTPLLLDPaqvplegspv 229
                 3444444556666***************************9*************************9999***************************** PP

                 ........EEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 118 ........rKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYsp.......svsdlddlevHLTNysiqkksk.slneesnekkgkkwslqelekylee 200
                         +KF+lR+y + ++   ++vYvY++ l++f++ +Ysp       + +   dl +HLTN+s+q +   +  +  +e  g++   +      + 
  CDO72339.1 230 ppmqdlrgHKFHLRVYCVASG--AIKVYVYDRILALFSAIPYSPpsvrqdgAEEHTVDLAAHLTNTSLQTERGeAGVRLLDELIGCHVLSDPGHLAFSH 326
                 ********************9..**********************9999998889999*************6666888889999999999999999999 PP

                 XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX.XXXXXX CS
         TTL 201 vrkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDili........denlkpwLlEvNasPdlksttkldaelkeeliddvlnlvvvppd 290
                  + + i+ +i ++  +t+ aa ve+   ++q+ +n+fel+G+D++i         +++++ LlEvN++P ++ t++  + + e+l++++ + +v p +
  CDO72339.1 327 DDISAIKLQISDVLSETFKAA-VEM-SVHFQPVPNAFELFGIDFVIthdpspnaARKFQVNLLEVNSEPAIELTGPRLTWILEDLFKAIARKCVAPFF 422
                 9********************.665.679*************************9*********************************9997766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4183.65
//
Query:       CDO72340.1  [L=288]
Description: hypothetical protein BN946_scf184977.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-22   78.1   0.0    1.1e-07   31.2   0.0    3.0  3  MMM1      Maintenance of mitochondrial morphology protein 1


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.9e-09   3.5e-05       2      39 ..      40      77 ..      39      97 .. 0.85
   2 !   20.5   0.0   1.1e-08    0.0002     101     169 ..     109     184 ..     103     199 .. 0.84
   3 !   31.2   0.0   6.4e-12   1.1e-07     269     309 ..     216     256 ..     200     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.9e-09
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        MMM1  2 sftqGllvGqlsvvllliifikffifgeasskeskass 39
                +ftqGl++Gq s++lll++++k+ +f   + +  +++s
  CDO72340.1 40 TFTQGLILGQASILLLLFLVLKYLFFDADPDRPYRKAS 77
                6***********************99888877666554 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.1e-08
                 --B--HHHHHHHHHHHHHHHH-TT......HHHHHH.HHHHHHHHGGCS-TTEEEEEEEEEE--S---EEEEEEE. CS
        MMM1 101 qpesLDWfnvLiaqtiaqfreeal......ekdnil.ksLnealnseelpdyldkikvteidlGedfPifsncrii 169
                 + es +W n ++ q+++ +r +        e d++  + ++e+ n+ +   +ld ikv ++dlG   P +  +ri 
  CDO72340.1 109 EVESSEWLNLFLQQVLDAYRVKLRnglsgpEGDEVArRRVEEFANKMRPTGFLDYIKVHDVDLGTSSPRLTRARIH 184
                 679*****************9999888998666766156777888888889********************99995 PP

  == domain 3  score: 31.2 bits;  conditional E-value: 6.4e-12
                 -SS-EEEEEEEEESSSSTT-TTHHHHHHHHHHHHHHHHHHH CS
        MMM1 269 lpdyrldlsvksliGsrsklqdvPkiaslvearlkkWfeer 309
                   d+ ld+++ sl+Gsr+kl+dvPk+ +l+ +++++ ++e+
  CDO72340.1 216 HSDFTLDIKTTSLMGSRAKLEDVPKLHELILHQIRRVIIEK 256
                 469********************************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1885.43
//
Query:       CDO72341.1  [L=1380]
Description: hypothetical protein BN946_scf184977.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-66  223.8   0.0    5.8e-66  223.0   0.0    1.3  1  Nucleoporin_N  Nup133 N terminal like
    2.2e-33  115.9   0.0    4.9e-33  114.7   0.0    1.5  1  Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-term


Domain annotation for each model (and alignments):
>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.0   0.0   6.4e-70   5.8e-66       4     433 ..      93     574 ..      91     575 .. 0.81

  Alignments for each domain:
  == domain 1  score: 223.0 bits;  conditional E-value: 6.4e-70
                    SCEEEEEEE--HCHHHTTS--SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS...EEEEEE----S---EEEEEE---SSSS-SSSCEEEEECT CS
  Nucleoporin_N   4 dfykvsklalPdelleelnhtesstkgglfpeigrawitvdnklflWnYnstasspstdtipydgeehtilavglLvkpkpgtfveevgllLvvat 99 
                    +f k  ++ +P+ l + +++t+  t++gl pe++r wi++d +lflW+Y +++     +  ++ +++  i++v+ Lvkpk+g+f +e++ lLv++t
     CDO72341.1  93 PFQKRRHIGIPESLWQYYTSTNLATHMGLLPELDRVWISIDHNLFLWDYVDGQ-----ELSSFTEQPDVITHVA-LVKPKSGVFIDEITSLLVICT 182
                    677778889*******************************************9.....****************.********************* PP

                    TSEEEEECECCS----...----EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTS.SEEEEEEC-SSS-CEEEEEEEEE-SSSS-...--S CS
  Nucleoporin_N 100 tgeivyweviysaasl...lstnelslfntdlsvssdgeivtqvinseptgriflagstg.rlyeltyrdssgwpslkckkicltkgglssllsil 191
                    ++ + +++v+ +  +      ++e +l+ td+svs d  ++++ + ++p+grif++gs + +lye++y+ ++gw++++++ i+++ gg+    s+l
     CDO72341.1 183 PITVLLLGVSTTPVPGpnnQMRKEIKLYATDMSVSCD-VEMSS-VVGTPDGRIFMSGSQDgNLYEFHYQEKEGWFGKRVQLINHSVGGVQ---SLL 273
                    **********99865567878***************9.55555.88999*********999*****************************...*** PP

                    SS--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-EEEEEEES-TTTS.SCEEE CS
  Nucleoporin_N 192 pgvlsgasereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplaskslkildispvsaees.sllhl 286
                    p +       ++i++l++d+ r+  y+l++k +i v++++   g+++  +  +i++ ++ a + ++++s+ l + +++++ +++++++es s ++l
     CDO72341.1 274 PRIGA----TNRIISLVSDPARNCFYSLTAKNTISVWRTN---GDKHVQHLQTISNLYKAA-QDKAPGSPALTPQNFNVVALHVIDPSESrSGVQL 361
                    ***88....****************************966...666666667777777766.99************************984569** PP

                    EEEECSSSEEEEEEEEE.........EEECTTT-EEEEEEEEE...................EEEECCCCCSSSSS........SSBECC-CC... CS
  Nucleoporin_N 287 vaitsngvrlylllsss.........ssdspsalslvsvrfpp...................krlntysskllenk........kksklllps... 343
                    vait ngvrly++ ss+            +  +lslv+vr+pp                   +                     + s+ ++ +   
     CDO72341.1 362 VAITTNGVRLYFSPSSFgstygwnasAAPGYRNLSLVHVRLPPpnlihpdeqsnpfrgaaaaY------------GvgqgpqqqSTSRPYIITnle 445
                    ***********************9766666789999*******99999997666666555542............233344444444445555558 PP

                    .SSETTCEEEEEEES-.-SEEEEEEE.....................EE-TTTTSSS........ESEEEECCS--S.E-EEE.EE--T--T--CC CS
  Nucleoporin_N 344 .kiispgiflfvvfdk.ssavvlvsl.....................pdtgilkksq........lvedasflpldg.kwedi.islrksfdatil 406
                     + +  gi++ v ++   +a++l+++                     p + + +++         l e a+++++ g +w  + ++ +k  ++t+ 
     CDO72341.1 446 dTCYDLGITVGVQRGDvADADYLLCMapdlaqigsfgqvrgpqmqqaPQYVSHPYNTnavasrvpLTERATLINIPGlTWGMApVPRSKYSSVTSA 541
                    888999999999998886777777774333333333333332222222222222222444445556666666666666666666666665555555 PP

                    C.....CCCSSTTCTTTTS---.EEEETTTEEE CS
  Nucleoporin_N 407 p.....sgyenesatqykePar.valltntGvv 433
                    p         ne+atq++ePar +++ltn G++
     CDO72341.1 542 PantpaPLVTNELATQFSEPARqYIILTNGGLH 574
                    599888999**********************99 PP

>> Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   5.5e-37   4.9e-33     174     459 ..     803    1139 ..     796    1200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 5.5e-37
                     XXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHH.....HHHHHHHHHHXX CS
  Nucleoporin_C  174 lerlldLtklllkdlfapn.........lssiinrnisrgesieleatllqeicgslcsltdvllfraiErlrwake.....qkdkklqnaikl 253 
                     +e++  +++l+++dl++           + +iin++i ++ s ++++++lq++cgs+cs++dv+l++a E++r+  e      ++  l ++ +l
     CDO72341.1  803 TEVQKLISSLTFEDLITSDkgvtasralVNVIINQQIGQQISVDTISEVLQQRCGSFCSTDDVMLYKARENVRKSVEtrnplERQTWLGESLRL 896 
                     566777889999999999999999999999***********************************************9998888888999**** PP

                     XXXXXXX.........XXXHHHHHHHHHHHHTSXHHHHHHHHHHHHH..HHHXS...........SSSXHHHH......HHHHHHH........ CS
  Nucleoporin_C  254 lekaydearkeqilkLlsigkleeaielaekledfralvellleianklasdkg...........ederkelyekaeelekriely........ 328 
                     + k  ++         l+++kl+e     ++l++ +++vel l  a+  ++d +           +d r +       +e+r + y        
     CDO72341.1  897 FMKGARN---------LEFEKLREICGDYQQLNYAKGAVELPLYCAQAFDPDLQgqeywvagspaNDPRAQ------FWERRKKCYelvldsls 975 
                     *******.........******************************9885555567778655544444444......4577777778889999* PP

                     ..............................SSSXXHHHHHHHHHHHHHTTXGGGGGGX..XXTTHHHHHHHTX...XHHHHHHTHHHHXXSHHH CS
  Nucleoporin_C  329 ..............................fekfgkaFayalYdwlisqgqqekLLdlkedtsfilpFLrekp...elakllWiydvkekdfee 389 
                                                   f++ ++ F+  lYdwli  g+ ++LL++  + +++   Lr +p   e  +llW ++vk  +   
     CDO72341.1  976 vfeercvtekqgqegaddpdavrshayelaFASEDEMFHSTLYDWLIGRGMADELLEM--RPAYLEAHLRREPvtvEKYQLLWQFYVKDGQPLR 1067
                     **********************************************************..****************9***************** PP

                     HHHHHHHHHSS.SSXXXHHHHHH.HHHH....X---HHH................HGGGHHHHHHHHHHHHHHHH. CS
  Nucleoporin_C  390 AAeiLysLals.keqlvlskrie.LSla....kLaqLaeleesekekkglekklekieellevaaiQddllalilp 459 
                     AAe+L  La s +++l l+ r+e L la    k    +       ++++  + l+++ee+leva++Q +l+++ lp
     CDO72341.1 1068 AAEVLTILAEStEFNLPLETRLEyLTLAvgnaKSHPVSV----GGRHETAIAFLTDLEEKLEVAQVQLELYNTLLP 1139
                     *********87257889**********966663333333....2333355667788*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 8917.11
//
Query:       CDO72342.1  [L=422]
Description: hypothetical protein BN946_scf184977.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-67  226.0   0.0    6.2e-67  225.7   0.0    1.0  1  Pkinase        Protein kinase domain
    6.5e-26   91.2   0.0    1.2e-25   90.3   0.0    1.4  2  Pkinase_Tyr    Protein tyrosine kinase
    5.9e-07   29.1   0.1    7.5e-05   22.2   0.1    2.2  2  Kinase-like    Kinase-like
     0.0062   16.2   0.0     0.0096   15.5   0.0    1.2  1  RIO1           RIO1 family
  ------ inclusion threshold ------
      0.096   11.6   0.2       0.22   10.4   0.2    1.6  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   0.0   1.7e-70   6.2e-67       1     264 []      92     378 ..      92     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 1.7e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH.HHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle.rkgsls 96 
                 ye+l+ + eGs+G+V++a++k+tg+ivA+Kk+k +++k+    ++lrEi+ l  +kh+n+v + ev+     +++++v++++e++ l++ll+   + + 
  CDO72342.1  92 YERLNSIEEGSYGVVFRARDKQTGDIVALKKLKLDEEKHGFPITALREINALMVCKHENVVGIREVVVGdtLTQVFIVMDFIEHD-LKTLLSvMPSPFL 189
                 67888999*********************************************************99763367999*******77.*****965667** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyell 191
                 ++e+k ++ q+l++++++H++ i+HrDlK++N+L++++g +K++DFGla+++        lt+ v+t +Y+APE+l +++ ys++vD+Ws+G+i++ell
  CDO72342.1 190 QSEVKTLMLQLLSAVAHCHERWILHRDLKTSNLLMNNRGTIKVADFGLARRYGDPVGvggLTQLVVTLWYRAPEILmGATTYSTAVDMWSVGCIFAELL 288
                 ******************************************************999999****************999******************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.......................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.......................seeakdllkkllkkdpkkRltaeellqhpyl 264
                  ++p+f+    k     e++ +++i+k+lg +t++++p  +++                        +  +dl+++ll++dp+kR++aee+l+hpy+
  CDO72342.1 289 LNEPLFQ---AK----GEIEMMFMIFKLLGpPTNQAWPGYHTLplaksitlpaphppqlrqripyiTNAGLDLMSRLLAYDPEKRISAEEALKHPYF 378
                 *******...33....477778899*****988999999999999999************************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   3.4e-29   1.2e-25       5     200 ..      96     289 ..      92     316 .. 0.86
   2 ?   -3.1   0.0         1   3.7e+03     234     254 ..     351     371 ..     341     374 .. 0.79

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 3.4e-29
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkekek 99 
                  +++ eG++G V++++ k    ++   Va+K+lk + +++      l+e++ ++ +kh+n+v +  v++     +++iv++++++ dL++ L     ++
   CDO72342.1  96 NSIEEGSYGVVFRARDK----QTGDIVALKKLKLDEEKHGfPITALREINALMVCKHENVVGIREVVVgdTLTQVFIVMDFIEH-DLKTLLSVM-PSP 187
                  6799**********999....89999******87766665478899**********************7666779*******98.9*******9.999 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllw 196
                  +  +++  ++lq+ +++++ +++ ++Hrdl + N L++++ ++k++DfGLar+  +       ++  + + + apE+l+  + ++++ D+Ws G +  
   CDO72342.1 188 FLQSEVKTLMLQLLSAVAHCHERWILHRDLKTSNLLMNNRGTIKVADFGLARRYGDPVGVGGLTQLVVTLWYRAPEILMGATtYSTAVDMWSVGCIFA 285
                  9999999**********************************************94333334444455555566***9987665*************** PP

                  HHHT CS
  Pkinase_Tyr 197 Eift 200
                  E++ 
   CDO72342.1 286 ELLL 289
                  *986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                  HHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 234 lyelmkkcweedpeeRptfse 254
                    +lm++ +++dpe+R + +e
   CDO72342.1 351 GLDLMSRLLAYDPEKRISAEE 371
                  568999**********98765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0042        15      17      57 ..      95     135 ..      89     149 .. 0.82
   2 !   22.2   0.1   2.1e-08   7.5e-05     113     238 ..     166     282 ..     156     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0042
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkdle 57 
                   + +++g  +vvf+++d++tg+ +a+k   l +e     + 
   CDO72342.1  95 LNSIEEGSYGVVFRARDKQTGDIVALKKLKLDEEKHGFPIT 135
                  567899999******************99888876655555 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.1e-08
  Kinase-like 113 allllpaasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve....k 205
                   ++++  ++ dl++l +v+ +     +++    +  l lql+  +a+ +++ ++h +++  nll++++g +++ +f+  +r+g+ v +   ++     
   CDO72342.1 166 VFIVMDFIEHDLKTLLSVMPSPF--LQSE---VKT-LMLQLLSAVAHCHERWILHRDLKTSNLLMNNRGTIKVADFGLARRYGDPVGVgGLTQlvvtL 257
                  57777777777777777776543..2222...233.34799999****************************************99984333355444 PP

  Kinase-like 206 gfaPpEllgsrggytrknktkmthkldaWqlGl 238
                   +  pE+l           t+++ ++d W +G 
   CDO72342.1 258 WYRAPEILMG--------ATTYSTAVDMWSVGC 282
                  5788888766........467888999999995 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.7e-06    0.0096      46     149 ..     127     235 ..     104     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.7e-06
                 -HHHHHHHHHHHHHHHHHHHHHTT.--S--EE...EEETTEEEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEE CS
        RIO1  46 nprklvklwaekEfrnLkrleeag.vpvPkpi...elkrhvlvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlv 139
                 + ++   ++a +E+++L+  ++++ v + +++   +l +  +vm+fi++d   +  +   +  ++e ++l+ ++l++++    e  + H DL   N+l+
  CDO72342.1 127 EEKHGFPITALREINALMVCKHENvVGIREVVvgdTLTQVFIVMDFIEHDLKTLLSVMPSPfLQSEVKTLMLQLLSAVAHCH-ERWILHRDLKTSNLLM 224
                 45555677888888888888877645566665333567788*******88888888888886699***********877776.999************9 PP

                 ETT.EEEE--G CS
        RIO1 140 ded.kvviIDv 149
                 ++   + + D+
  CDO72342.1 225 NNRgTIKVADF 235
                 98767777776 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   6.1e-05      0.22     207     256 ..     192     240 ..      87     247 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.1e-05
  Haspin_kinase 207 qalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                    +++ ++ q ++ ++   +++ + HRdL+  n L+++ +++ + d+ l+R 
     CDO72342.1 192 EVKTLMLQLLSAVAHCHERWIL-HRDLKTSNLLMNNRGTIKVADFGLARR 240
                    5555555665555555555544.*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 2679.83
//
Query:       CDO72343.1  [L=438]
Description: hypothetical protein BN946_scf184977.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-11   44.0   0.0    2.5e-05   24.6   0.0    2.4  2  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
    1.8e-10   40.8   1.6    5.1e-10   39.4   1.6    1.8  1  Myb_DNA-bind_2  Rap1 Myb domain
  ------ inclusion threshold ------
       0.28   11.8   3.5        2.3    8.8   3.5    2.4  1  Rap1-DNA-bind   Rap1, DNA-binding


Domain annotation for each model (and alignments):
>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.1e-09   2.5e-05       7      79 ..      11      91 ..       2      93 .. 0.91
   2 !   17.6   0.0   6.2e-07    0.0037       2      78 ..      92     179 ..      91     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.1e-09
      BRCT_2  7 glrFYindaepspsreklkklIeknGGevvetitsavyiviaesneee........laekrkrrvvspkyIkdCikkgkll 79
                 ++F+i +++p++ ++++ + I + GG+v+ +  +a +i++ + + ee        ++e+++r +v ++y+++C  +g ll
  CDO72343.1 11 AIKFFIQKDIPEEIQAEVCETIASLGGRVEPKVPRAGFILVQPGTAEEerlrlcwsTSERPERYFVPYTYVEACKVSGMLL 91
                69*****99**********************************999999******999999*************9888777 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 6.2e-07
      BRCT_2   2 sklF....eglrFYindaeps.psreklkklIeknGGevvetitsavyiviaesneee......laekrkrrvvspkyIkdCikkgkl 78 
                 +++F    +++r  i +++ + + r+ l + I + GG  +++ +sa +i+  +++e         + ++++ v s+ ++k Ci+kg++
  CDO72343.1  92 KQIFihngQPIRMHIDSSIANvNVRAALSARIMHSGGDPTASAQSARVILADPNTEIFqhlvktYQGEPEKYVESYLWVKKCIEKGQV 179
                 67899999999999987777789********************999888888777777*****6555566666699*********997 PP

>> Myb_DNA-bind_2  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   1.6   8.5e-14   5.1e-10       2      58 ..     198     263 ..     197     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 8.5e-14
  Myb_DNA-bind_2   2 RlpyteeeDaailkyvkekersp..asvkGnkiwkel.......ekkhltrHsWQslkdRylkrlr 58 
                     R+ +tee+ + + +++  k  ++     +Gn+++++l       e   +trH+WQs+++Ry+k   
      CDO72343.1 198 RTQFTEEDEQHLCNWIAAKIPYKetGGRTGNRLYQQLcemahdpEYAWVTRHTWQSWRERYKKNAT 263
                     99**************87765552255789*****88433333333569*************9765 PP

>> Rap1-DNA-bind  Rap1, DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.5   0.00039       2.3      63      79 ..     247     263 ..     200     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00039
  Rap1-DNA-bind  63 prHtensWrdryrKfvl 79 
                     rHt +sWr+ry+K  +
     CDO72343.1 247 TRHTWQSWRERYKKNAT 263
                    59************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3142.25
//
Query:       CDO72344.1  [L=510]
Description: hypothetical protein BN946_scf184977.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-60  204.8   0.1    2.1e-60  204.4   0.1    1.1  1  FAD-oxidase_C    FAD linked oxidases, C-terminal domain
    8.3e-34  116.3   0.4    1.7e-33  115.3   0.4    1.4  1  FAD_binding_4    FAD binding domain
  ------ inclusion threshold ------
      0.022   14.6   0.0      0.039   13.8   0.0    1.4  1  Methyltransf_14  C-methyltransferase C-terminal domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4   0.1   3.6e-64   2.1e-60       2     250 .]     255     508 ..     254     508 .. 0.95

  Alignments for each domain:
  == domain 1  score: 204.4 bits;  conditional E-value: 3.6e-64
                    -SEEEEEEEEESSHHHHHHHHHHHHHH.T---SEEEEE-HHHHHHHHHTS-SS...TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-..E CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqa.giipaalelmdkkaldlveatkgak...kglpdeeealllvefegddeeeaeeelealveailea..t 91 
                    p+a +++++a+p fe+++  + e++++  +i++a+e+md++ +dl+ ++ +      +  +++++ +lve++g ++e++ee+l+ l+e+++ea   
     CDO72344.1 255 PQASNNVMLALPKFENVLPLFKETKRQlSEILSAFEFMDRTVYDLAVKHGQGRaldPADVEGADCFVLVETSGGKREHDEEKLNSLLESLMEAdeP 350
                    999*************************************************777333335689********************988888875225 PP

                    EEEE..........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH.......EEEEEEEEEETTEEEEEEEEEEE CS
  FAD-oxidase_C  92 gaadvlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyg.......levvlfgHagdgnlhlyilfdla 180
                     + ++++a+++a+  alw++R+++ +     +  +++ ++++D+svP++++ ++v ++k+ l+++g        +vv +gH+gdgnlhl++  ++ 
     CDO72344.1 351 LINTGVLATSPAQFSALWAIREGLTE-----AVSKEGKAYKYDISVPLHKFKEVVDRTKEQLRQKGllhddavKHVVGYGHVGDGNLHLNVVAAAY 441
                    67778*********************.....899999***********************************999********************* PP

                    ..--TT--THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 181 deaeeeraeklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                     ++ e+++e++v+e+   +++++Gsis+EHG+G++k + l+++k+++ ++ m++iKa++DP+gi+NPgkv
     CDO72344.1 442 TPEIEAALEPFVYEL---VASYKGSISAEHGIGVMKTHALQYSKSPTSIEWMKKIKALFDPNGIMNPGKV 508
                    ***************...***************************************************8 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.4   2.8e-37   1.7e-33       4     136 ..      82     215 ..      80     217 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 2.8e-37
                    EEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGS CS
  FAD_binding_4   4 vvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipg 98 
                    v++p++++ev+++++++n++++ ++++Gg ++l+g++v  ++ ++l+l ++ +i+++d+ +g++++ aG++l+ l  +l  ++ +++l+ g+  ++
     CDO72344.1  82 VLKPRTTQEVSEIVKWCNQRRIGIVPQGGNTGLVGGSVpVRDELILSLANMSKIRSFDDVSGILVADAGCILQSLSDFLVSHHHIVPLDLGAKGSC 177
                    899*******************************999999********99********************************************** PP

                    BHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEE CS
  FAD_binding_4  99 tvGGaiatnagGygsekyGlirdnvlglevvladGevv 136
                     +GG+++tnagG +  +yG+++ +vlglevvl+dG+++
     CDO72344.1 178 QIGGNVSTNAGGLRLLRYGSLHGTVLGLEVVLPDGTIL 215
                    ************************************98 PP

>> Methyltransf_14  C-methyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.5e-06     0.039      27      87 ..     376     437 ..     366     487 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.5e-06
  Methyltransf_14  27 ellaeE.kaagldeletyaeFaervekvkeellalllelkaegkkvvgYGAaakgntllnyc 87 
                      e + +E ka + d + + ++F+e v+++ke+l++  l   ++ k+vvgYG    gn  ln++
       CDO72344.1 376 EAVSKEgKAYKYDISVPLHKFKEVVDRTKEQLRQKGLLHDDAVKHVVGYGHVGDGNLHLNVV 437
                      445555155666777789****************999999****************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3567.58
//
Query:       CDO72345.1  [L=207]
Description: hypothetical protein BN946_scf184977.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1401.70
//
Query:       CDO72346.1  [L=355]
Description: hypothetical protein BN946_scf184977.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-07   32.1  11.7       0.14   13.1   0.2    5.4  5  WD40         WD domain, G-beta repeat
    0.00011   22.4   0.0       0.18   12.1   0.0    3.7  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.21   11.4   0.0       0.55   10.1   0.0    1.6  1  KTSC         KTSC domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.5e-05      0.39       7      38 .]      13      47 ..       8      47 .. 0.73
   2 !    4.8   0.0    0.0094        56      16      36 ..      72      92 ..      65      94 .. 0.87
   3 ?   -1.3   0.3      0.82   4.9e+03       3       3 ..     131     131 ..     101     155 .. 0.61
   4 !    6.6   0.1    0.0027        16      12      31 ..     216     235 ..     207     239 .. 0.85
   5 !   13.1   0.2   2.4e-05      0.14      24      38 .]     274     299 ..     248     299 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
                EESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40  7 ltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38
                   H + v+++a     + + +as+++D+ v iWd
  CDO72346.1 13 PQQHyFTVNDVAidPACSPTHFASAGRDRRVLIWD 47
                456766788887655555555889999*******9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0094
                EEEETTSSEEEEEETTSEEEE CS
        WD40 16 lafspdgawlasGsdDgtvri 36
                ++++pdg++la  +dDg+v++
  CDO72346.1 72 VKYHPDGSMLAIQCDDGSVYL 92
                679*******98677***986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.82
                 E CS
        WD40   3 c 3  
                 c
  CDO72346.1 131 C 131
                 3 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0027
                 SEEEEEEETTSSEEEEEETT CS
        WD40  12 svtslafspdgawlasGsdD 31 
                 +v+sl+ spd  +la+G  D
  CDO72346.1 216 DVNSLSLSPDALYLAAGRTD 235
                 49*************99556 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 2.4e-05
                 E...........EEEEETTSEEEEEE CS
        WD40  24 w...........lasGsdDgtvriWd 38 
                 w           l++G+ Dg vr+Wd
  CDO72346.1 274 WvdgaprgvgvgLVTGGSDGCVRLWD 299
                 344444455555788977*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     3e-05      0.18      42      66 ..      70      94 ..      42     118 .. 0.80
   2 ?   -1.1   0.0      0.39   2.3e+03      65      82 ..     142     159 ..     131     184 .. 0.57
   3 !    4.9   0.0    0.0052        31      33      68 ..     209     244 ..     189     262 .. 0.82
   4 ?   -0.8   0.0      0.32   1.9e+03      52      69 ..     285     302 ..     280     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
  ANAPC4_WD40 42 rsLaWkpdgklLavaysdgevrlld 66
                 + ++++pdg++La+ ++dg+v l++
   CDO72346.1 70 EVVKYHPDGSMLAIQCDDGSVYLHS 94
                 4589*****************9875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
  ANAPC4_WD40  65 ldaesgkvvhslsvksek 82 
                  +d+   kvv ++++++e 
   CDO72346.1 142 FDVVRNKVVVEFDAAKEA 159
                  555555555555555442 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0052
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  ++dk +  v+sL+ +pd   La +  d+   ++da 
   CDO72346.1 209 STDKASMDVNSLSLSPDALYLAAGRTDNWADVYDAR 244
                  67889999********************99999875 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.32
  ANAPC4_WD40  52 lLavaysdgevrlldaes 69 
                   L+ + sdg vrl d+  
   CDO72346.1 285 GLVTGGSDGCVRLWDVRR 302
                  589999*******99975 PP

>> KTSC  KTSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   9.2e-05      0.55       8      30 ..      72      94 ..      69     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.2e-05
                EEEETTTTEEEEEETTTEEEEEE CS
        KTSC  8 igYdpetqtLeieFkngsvyqYs 30
                + Y+p+ + L+i+ ++gsvy +s
  CDO72346.1 72 VKYHPDGSMLAIQCDDGSVYLHS 94
                78******************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2445.34
//
Query:       CDO72347.1  [L=108]
Description: hypothetical protein BN946_scf184977.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   14.2   0.0      0.061   13.5   0.0    1.3  1  CSD2      Cold shock domain


Domain annotation for each model (and alignments):
>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.4e-06     0.061      41      73 ..      60      92 ..      49      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-06
        CSD2 41 npeGevievLGkkgdpgveilsilakhglpeeF 73
                ++ G v + LG+ +  g ++++i+a+h++ +e+
  CDO72347.1 60 DAAGAVPKCLGRLDLTGEDMDAIAASHDIAKEW 92
                488****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 757.73
//
Query:       CDO72348.1  [L=446]
Description: hypothetical protein BN946_scf184977.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-05   21.8   0.1    0.00015   21.2   0.1    1.2  1  BAF250_C  SWI/SNF-like complex subunit BAF250/Osa


Domain annotation for each model (and alignments):
>> BAF250_C  SWI/SNF-like complex subunit BAF250/Osa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   8.4e-09   0.00015       6      46 ..     382     422 ..     379     441 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.4e-09
    BAF250_C   6 clcvSnilRsLsfvpgndtelakhkalllilgrllllhheh 46 
                  l+v ni+R+Ls    n++ lakh++ll +l rl  l  + 
  CDO72348.1 382 ILAVVNIIRNLSLATENQEYLAKHPKLLHVLLRLCALVRST 422
                 589*******************************9887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3062.14
//
Query:       CDO72349.1  [L=157]
Description: hypothetical protein BN946_scf184977.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-22   78.7  11.1    1.2e-20   74.2   1.3    2.1  2  DUF1764   Eukaryotic protein of unknown function (DUF1764)


Domain annotation for each model (and alignments):
>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   3.3   9.5e-05       1.7       9      57 ..       4      54 ..       2      73 .. 0.54
   2 !   74.2   1.3   6.9e-25   1.2e-20      33     100 .]      90     157 .]      62     157 .] 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.5e-05
     DUF1764  9 eeideifseskkkkkekekeeeee..ekekkkkskkkkkkkkkkeeekkfe 57
                +eid+if+++ +++    + ++++  +++k kk+kk k++k+k+++ + ++
  CDO72349.1  4 SEIDAIFASKGTSSLPAPSPSSSSqpSEKKSKKKKKGKSAKRKRDHADPMH 54
                689****98888877777666544322222222222222333333333333 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 6.9e-25
     DUF1764  33 ekekkkkskkkkkkkkkkeeekkfedse.skkrrktedGlpvYteeeLgigkadgGgtplCPFdCeCCF 100
                  ++++ +  + kk kk +e+e++f+ds+ + +rr+te+G+++Y+e+eLgi + +gG+tplCPFdC+CCF
  CDO72349.1  90 PHSTVGAPPNVKKPKKVREDEARFKDSRgTGPRRTTEEGFAIYKEDELGITD-QGGDTPLCPFDCQCCF 157
                 5555556667788888999999******999********************8.9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1156.72
//
Query:       CDO72350.1  [L=267]
Description: hypothetical protein BN946_scf184977.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1985.12
//
Query:       CDO72351.1  [L=254]
Description: hypothetical protein BN946_scf184977.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-55  186.5   0.0      3e-55  186.3   0.0    1.1  1  Ras          Ras family
    1.2e-34  119.1   0.0    1.7e-34  118.6   0.0    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    7.8e-15   54.8   0.0    3.4e-14   52.7   0.0    1.7  2  Arf          ADP-ribosylation factor family
      2e-06   27.3   0.0    2.3e-06   27.1   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
      3e-05   23.7   0.0    3.6e-05   23.4   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00019   21.5   0.0    0.00031   20.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00038   20.9   0.4    0.00062   20.2   0.4    1.4  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.045   14.3   0.5       0.12   12.9   0.5    1.7  1  Usp          Universal stress protein family
      0.052   13.4   0.2        6.4    6.6   0.0    2.9  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   0.0   1.5e-58     3e-55       1     160 [.      16     209 ..      16     211 .. 0.99

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 1.5e-58
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klvl+G+ avGK+s++lrfv+++F+ ++e+Tig++f+t++++++++ ++ eiwDTAGqe+f+sl+++yyr+a+++++vyd+t+++s+e++k+wv+e++r
  CDO72351.1  16 KLVLLGEAAVGKSSIVLRFVSNEFQPNKEPTIGAAFLTQKCRLEDRVLRYEIWDTAGQERFHSLAPMYYRNAQAAVVVYDVTKASSLEKAKTWVKELQR 114
                 99************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGG..................................G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee..................................kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +a+ n++i+L GnK+Dl +                                   r+v +ee+e++a+e gl f+etSAkt e+v e+f+e++++i
  CDO72351.1 115 QANPNIVIALAGNKIDLVTpsassaspspesedeaddatatpgettasgepesLRQVPREEAEAYAQEAGLLFFETSAKTGEGVVEIFTEIAKKI 209
                 ****************************************************99**************************************998 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   8.6e-38   1.7e-34       1     120 []      16     131 ..      16     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 8.6e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+vl+G+++vGK+s++ rfv+++f++++++tig+ flt+++ +++        + ++++iWDtaGqerf+sl+p+y+r+a++a++vyd   ++s e++k
  CDO72351.1  16 KLVLLGEAAVGKSSIVLRFVSNEFQPNKEPTIGAAFLTQKC-RLED-------RVLRYEIWDTAGQERFHSLAPMYYRNAQAAVVVYDvtkASSLEKAK 106
                 99************************************998.3332.......4589*******************************54222347889 PP

                 HHHHHHHHHCSSS-EE.EEEE-TTT CS
         Roc  97 eWlkelkkvagkspvi.lvgnkiDl 120
                 +W+kel+++a+ ++vi l gnkiDl
  CDO72351.1 107 TWVKELQRQANPNIVIaLAGNKIDL 131
                 9******9988665543999***95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   1.7e-17   3.4e-14      12     129 ..      12     133 ..       2     148 .. 0.85
   2 ?   -0.3   0.0      0.32   6.4e+02     151     174 ..     185     208 ..     165     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.7e-17
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE....EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnvee....leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLk 105
                 + +++++llG  + GK+ i+ ++ ++e++    PTig    +    le + l++++wD  Gqe+  +l   Y+++ +a + v D+++ + le+ak+ +k
  CDO72351.1  12 SVQVKLVLLGEAAVGKSSIVLRFVSNEFQPnKEPTIGAAFLTqkcrLEDRVLRYEIWDTAGQERFHSLAPMYYRNAQAAVVVYDVTKASSLEKAKTWVK 110
                 56799**********************985389****765431122566899**********************************************9 PP

                 HHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf 106 alleeeelkevallvlaNKqDlpe 129
                 +l +++ + ++++ + +NK+Dl +
  CDO72351.1 111 EL-QRQANPNIVIALAGNKIDLVT 133
                 97.6677888999999*****976 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.32
                 EEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 151 leiqkcsavkgeglkeglewlses 174
                 l  +++sa +geg+ e ++ ++++
  CDO72351.1 185 LLFFETSAKTGEGVVEIFTEIAKK 208
                 567899**********99998876 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09   2.3e-06       1     130 [.      16     138 ..      16     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.2e-09
   Gtr1_RagA   1 kvLLmGksgsGKtsmr.siiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k++L+G+   GK+s+  + + ++++++   ++ga+  ++k ++   + l  ++wD  Gqe+f        +   +rn ++ + V Dv++ +  e+ +t+
  CDO72351.1  16 KLVLLGEAAVGKSSIVlRFVSNEFQPNKEPTIGAAFLTQKCRL-EDRVLRYEIWDTAGQERFHSL-----APMYYRNAQAAVVVYDVTKASSLEKAKTW 108
                 899***********9736778889***********99999999.58899**********998765.....58899*************66555555555 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedere 130
                 ++ l+  rq +p++ +    +K+Dl++ ++ +
  CDO72351.1 109 VKELQ--RQANPNIVIALAGNKIDLVTPSASS 138
                 54444..699****************977655 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.8e-08   3.6e-05      67     193 ..      60     210 ..      19     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.8e-08
                 CSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHH.HHHHHHHHHTTTE.EEEEE..ESCGST.....HHHHHHHHHHHHHHHHHH... CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqt.eevlrlalkegvp.iivfi..NKmDrl.....kaelkeiveevkqklsrk... 153
                  +  ++ + Dt G + F +     +r +  av+v d+++       ++ ++ ++++  p i++++  NK+D +      a+ +   e+  ++ +++   
  CDO72351.1  60 DRVLRYEIWDTAGQERFHSLAPMYYRNAQAAVVVYDVTKASSLEKaKTWVKELQRQANPnIVIALagNKIDLVtpsasSASPSPESEDEADDATATpge 158
                 66778999*****************************988554440444444444433354444445******99777444444444444344344788 PP

                 ..............HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 ..............eeklekygekgekevpvvfgSalkgegvktllealvellp 193
                                e+ e+y++++     ++ +Sa++gegv +++  + +++p
  CDO72351.1 159 ttasgepeslrqvpREEAEAYAQEA--GLLFFETSAKTGEGVVEIFTEIAKKIP 210
                 8899998888888767776676554..6999***************99999887 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.6e-07   0.00031       2     110 ..      17     122 ..      16     128 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSST..TSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkp..gtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeel 97 
                  +++G   vGKS+++ + + ++ + +++p  g+   +++ r++ +  ++e++Dt+G  e   + ++l+  + ++ +a ++++ v  +  ++l++ +  +
  CDO72351.1  17 LVLLGEAAVGKSSIVLRFVSNEFQPNKEPtiGAAFLTQKCRLEDRVLRYEIWDTAG-QE---RFHSLAPMYYRNAQAAVVVYDV--TkASSLEKAKTWV 109
                 6899***************997766666633555555555555444889*******.54...3337888888766655554444..4223566666667 PP

                 HHHHHHTTSEEEE CS
    MMR_HSR1  98 eelleeakkplil 110
                 +el+++a+ ++++
  CDO72351.1 110 KELQRQANPNIVI 122
                 7776655555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.4   3.1e-07   0.00062      27     107 ..      17     145 ..       2     202 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.1e-07
      AAA_16  27 vllsGesGvGKsslv.rellralekd.....ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaeleawrekle 102
                 ++l Ge++vGKss+v r + ++++ +     g+ fl++kc+  ++ ++y  +++++ + e +  l+ +                 ++  ++  w ++l+
  CDO72351.1  17 LVLLGEAAVGKSSIVlRFVSNEFQPNkeptiGAAFLTQKCRLEDRVLRY-EIWDTAGQ-ERFHSLAPMyyrnaqaavvvydvtkaSSLEKAKTWVKELQ 113
                 789************7777777777799***************999888.45555534.6666665555555444444444444466666667777776 PP

      AAA_16 103 eala...........................a 107
                 ++++                           +
  CDO72351.1 114 RQANpnivialagnkidlvtpsassaspspeS 145
                 66667777777777777777777766655441 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   5.9e-05      0.12      42     119 ..     148     226 ..      88     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-05
                 SHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHH.HHHHHHTTSSEEEEESCCSSTTTT CS
         Usp  42 rasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeei.levaeeedadliVvGsrgrsglsr 119
                 +a++a++++ e+++  e e+ ++  +++a++ a+eag    e+  + g++  ei +e+a+++ +d i+  srg  g  +
  CDO72351.1 148 EADDATATPGETTASGEPESLRQVPREEAEAYAQEAGLLFFETSAKTGEGVVEIfTEIAKKIPIDQILASSRGGAGRPG 226
                 333444444444444444444444444448899*********************89*****************665554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0032       6.4     102     122 ..      17      37 ..       9      49 .. 0.82
   2 ?    3.1   0.1     0.041        82      54      63 ..     127     136 ..      72     218 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                   vl+G+  vGKS+++ +++++
   CDO72351.1  17 LVLLGEAAVGKSSIVLRFVSN 37 
                  699***********9887776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.041
                  E-GGG--HHH CS
  RsgA_GTPase  54 nKiDlleeee 63 
                  nKiDl++ + 
   CDO72351.1 127 NKIDLVTPSA 136
                  5566555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1749.04
//
Query:       CDO72352.1  [L=662]
Description: hypothetical protein BN946_scf184977.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-54  185.7   4.2    2.6e-52  178.0   2.0    2.3  2  Alginate_lyase  Alginate lyase
  ------ inclusion threshold ------
      0.035   13.7   0.2      0.073   12.6   0.2    1.5  1  DUF5029         Domain of unknown function (DUF5029)


Domain annotation for each model (and alignments):
>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00029       2.6       3      26 ..      68      93 ..      66     131 .. 0.74
   2 !  178.0   2.0   2.9e-56   2.6e-52       4     263 ..     247     514 ..     238     516 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00029
                    CCCCCCHHTTS-TCCHHHHCCCC..H CS
  Alginate_lyase  3 taksklsdksgdkhdylseapyw..d 26
                      k + +++sgd hdyls+apy+  d
      CDO72352.1 68 VTKNSVEPPSGDVHDYLSWAPYHwpD 93
                    4455555***************9442 PP

  == domain 2  score: 178.0 bits;  conditional E-value: 2.9e-56
                     CCCCCHHTTS-TCCHHHHCCCCHCTCCCH.S.CCCCTTSSCHCCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHCTTTCCCC CS
  Alginate_lyase   4 aksklsdksgdkhdylseapywdatkpdglpyvrrdgqrnpnedaecdlkaleawadavallalayyltgdkrYaekagellraWfldpktrmnp 98 
                     ak+k s+ ++++ + l+ ++ w       +pyv rdg++np+ +   d+ a+ +++++v   a ay  ++   Y + ++++++a+fl+p+t+mnp
      CDO72352.1 247 AKTKASKCTPSPTKSLAPSATW-----TTCPYVVRDGKVNPDVRTLPDSPAVVDMSQSVLYNAIAYGMSKTRSYSQNVAKFIDAFFLTPATAMNP 336
                     4444445555555555555555.....99****************************************************************** PP

                     CCCCCCCBTT.........GGGGGGH....HHHHHHHHC..TTCSSSHHHHHHHHHHHHHHHHHHHHHCHHHCCCCTGCSHHHHHHHHHHHHHHH CS
  Alginate_lyase  99 nleyaqaikg.......grgagiidt....evldalall..eaakalpekerkaiekWfkklldwlqtsrkgkdekaaknNHgywaalqvaaial 180
                     n++y q ++g       g  +gi+d+    +v++a++l+   a+++++++ +ka+  W+k ++ w+q+s+ gk+ +++ nNH ++++ q+aa+ +
      CDO72352.1 337 NMNYGQQVRGpgkdhqmGTFTGILDLrgvvKVVNAIQLMkaAASPDWTAARDKAMTSWMKSYVSWMQNSALGKETASKANNHFSFYVNQLAAAQM 431
                     ***************************************9999**************************************************** PP

                     HTT-HHHHHHHHHHHHHHHHHHHS-TTS-BHHHHGSGGGHHHHHHHHHHHHHHHHHHHHCTT--GTC..TCTCCCHHHHHHHHH CS
  Alginate_lyase 181 vlgdrdlldkalkrykrailndqiapdGslpeElaRgtralhYsnfaLqalvmiaelaerngvdlwey.sedgktlkkavdfll 263
                     + gd++ ++++lk+y +  + dq+a+ G +p E+ R tr++hY  f+L+a ++ a+l+++ g + w+  s+ g+t++ a+d+++
      CDO72352.1 432 YNGDTQGAQNTLKSYFTNQFLDQVAASGEQPFEAVR-TRPYHYRCFNLEAIITNAKLGDQLGMNFWTAkSKYGATIQTALDYTM 514
                     ******************99****************.********************************************986 PP

>> DUF5029  Domain of unknown function (DUF5029)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   8.2e-06     0.073      98     176 ..     343     423 ..     334     447 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.2e-06
     DUF5029  98 dvatpgtkknmctfngvrqgdsvyvvvndpqmtlataq.tlahqgdkse.aairayisnlsksylndltvtkdgtqgkkyi 176
                 +v  pg  ++m tf g+ +   v  vvn  q+  a+a    +   dk+  + +++y+s + +s l   t +k   +   y+
  CDO72352.1 343 QVRGPGKDHQMGTFTGILDLRGVVKVVNAIQLMKAAASpDWTAARDKAMtSWMKSYVSWMQNSALGKETASKANNHFSFYV 423
                 5789***************************88877752456666776515699***********9999998776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4721.24
//
Query:       CDO72353.1  [L=655]
Description: hypothetical protein BN946_scf184977.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4694.89
//
Query:       CDO72354.1  [L=181]
Description: hypothetical protein BN946_scf184977.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-32  111.2   0.0      7e-32  110.7   0.0    1.2  1  AAA_18           AAA domain
    1.8e-06   28.5   0.0    4.8e-06   27.0   0.0    1.8  1  AAA_17           AAA domain
    1.8e-06   28.4   0.0    3.6e-06   27.4   0.0    1.5  1  AAA              ATPase family associated with various cellul
    6.3e-05   23.3   0.0    0.00025   21.3   0.0    2.0  3  AAA_28           AAA domain
    6.6e-05   23.2   0.0    0.00015   22.1   0.0    1.5  2  AAA_22           AAA domain
    0.00014   22.0   0.0     0.0018   18.4   0.0    2.1  2  AAA_33           AAA domain
     0.0003   20.9   0.0      0.006   16.7   0.0    2.1  2  ADK              Adenylate kinase
      0.003   17.4   0.0       0.66    9.8   0.0    2.2  2  dNK              Deoxynucleoside kinase
     0.0084   15.6   0.0      0.015   14.7   0.0    1.5  2  KTI12            Chromatin associated protein KTI12
     0.0098   15.3   0.3       0.34   10.2   0.0    2.1  2  ATPase           KaiC
     0.0099   16.3   0.1      0.015   15.7   0.1    1.8  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.019   15.0   0.0    1.3  1  AAA_14           AAA domain
      0.013   15.2   0.1      0.026   14.3   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.016   15.5   0.2      0.039   14.3   0.2    1.6  1  AAA_19           AAA domain
       0.03   14.2   0.7       0.18   11.7   0.2    2.1  2  NTPase_1         NTPase
       0.03   14.0   0.0      0.051   13.3   0.0    1.5  1  AAA_24           AAA domain
      0.045   13.0   0.0      0.069   12.4   0.0    1.4  1  Zeta_toxin       Zeta toxin
      0.049   12.9   0.0      0.075   12.3   0.0    1.4  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.062   13.0   0.2       0.12   12.1   0.2    1.4  1  AAA_30           AAA domain
      0.076   13.1   0.1       0.35   11.0   0.1    2.0  1  SKI              Shikimate kinase
      0.098   11.7   0.1       0.15   11.1   0.1    1.3  1  T2SSE            Type II/IV secretion system protein
      0.098   11.6   0.7       0.15   11.0   0.1    1.6  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.099   12.6   0.0       0.14   12.0   0.0    1.3  1  Rad17            Rad17 P-loop domain
        0.1   12.3   0.1        1.6    8.4   0.0    2.3  2  Arnt_C           Aminoarabinose transferase C-terminal domain
        0.1   13.0   0.0       0.19   12.1   0.0    1.5  1  RNA_helicase     RNA helicase
       0.12   12.7   0.9         27    5.3   0.1    2.6  2  RII_binding_1    RII binding domain
       0.18   11.6   0.0       0.26   11.0   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0     1e-34     7e-32       1     130 []      10     132 ..      10     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1e-34
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk 96 
                 I++tGtpG+GKtt a+ L+++  +   ++n++d++ke++l++e+d+e   +s  +dedk   lld+le  +s    ++ +++d+h ++ ++e++ d++ 
  CDO72354.1  10 IVVTGTPGTGKTTHAELLAQESPIplkHINVGDLVKEKNLYEEYDEE--WQSYTVDEDK---LLDELEPLAS----EGGIILDWHTCDIFPERWADLV- 98 
                 99****************99977799*********************..**********...*******876....8999******************. PP

      AAA_18  97 vvLtaspeelleRlekRgyeeakikeneeaeild 130
                 vvL+++  +l++RlekRgy  +ki+en+eaei+d
  CDO72354.1  99 VVLRCNHTMLWDRLEKRGYPLKKIQENNEAEIMD 132
                 *******************************996 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.3e-09   4.8e-06       1     116 [.      13     109 ..      13     131 .. 0.64

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 7.3e-09
                 EE-TTSSHHHHHHHHHHHH..TEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky..gfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 +G PG GK+t +e l+++    ++h++ Gdl+ e    ++    ++e +    +++++l++e++      a+++g+++d h +        d +p+   
  CDO72354.1  13 TGTPGTGKTTHAELLAQESpiPLKHINVGDLVKEKNLYEEY---DEEWQSYT-VDEDKLLDELEP----LASEGGIILDWHTC--------DIFPE--- 92 
                 69***************9755899********876444444...44444444.444445555543....33457888888875........44554... PP

                 HHH..SEEEEEE--HHHHH CS
      AAA_17  98 eelkpdaiilleadpeeil 116
                 + +  d++++l ++   + 
  CDO72354.1  93 RWA--DLVVVLRCNHTMLW 109
                 233..55666666654444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   5.4e-09   3.6e-06       2      38 ..      11      53 ..      10      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5.4e-09
                EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SS.....S CS
         AAA  2 llyGppGtGKTllakavakelgvefleisgsell.sk.....y 38
                +++G+pGtGKT+ a+ +a+e+ +++  i++ +l+ +k     y
  CDO72354.1 11 VVTGTPGTGKTTHAELLAQESPIPLKHINVGDLVkEKnlyeeY 53
                789*******************************333544440 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.7e-07   0.00025       2      22 ..      10      30 ..       9      78 .. 0.82
   2 ?   -1.4   0.0       3.6   2.4e+03     137     155 ..     104     122 ..      92     129 .. 0.70
   3 ?   -2.5   0.0       7.8   5.2e+03      30      47 ..     142     159 ..     119     173 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.7e-07
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                iv+tG+++tGKTt +e La++
  CDO72354.1 10 IVVTGTPGTGKTTHAELLAQE 30
                9******************86 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
      AAA_28 137 iderlrealrelgipviiv 155
                  +++l + l+++g+p+  +
  CDO72354.1 104 NHTMLWDRLEKRGYPLKKI 122
                 4667777777777776665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.8
      AAA_28  30 aareileeklakgedalp 47 
                 +a ei+ e++ +g+++l+
  CDO72354.1 142 YAPEIVVELQSEGTEDLE 159
                 333444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.2e-07   0.00015       4      83 ..       6      72 ..       3      85 .. 0.81
   2 ?   -2.3   0.0       7.2   4.8e+03      55      55 ..     141     141 ..     106     171 .. 0.55

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.2e-07
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseelleale 83
                +a ++vvtG +GtGKTt ++ l+++          + ++ ++++  + + k+l++e  +++++     + +++ ll+ le
  CDO72354.1  6 KAPVIVVTGTPGTGKTTHAELLAQES---------PIPLKHINVGDLVKEKNLYEEYDEEWQSY----TVDEDKLLDELE 72
                6889*********************8.........88888999999999999999999999863....344555555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.2
      AAA_22  55 d 55 
                 +
  CDO72354.1 141 S 141
                 2 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.8e-06    0.0018       1      35 [.       9      45 ..       9      83 .. 0.70
   2 ?    1.4   0.0      0.47   3.2e+02      99     123 ..      96     120 ..      85     144 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.8e-06
      AAA_33  1 lvllvGlpGsGKstlaerllkklg..avllssdtlrr 35
                ++++ G pG+GK+t ae l+++ +    +++  +l +
  CDO72354.1  9 VIVVTGTPGTGKTTHAELLAQESPipLKHINVGDLVK 45
                7999******************998877777766665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.47
      AAA_33  99 vrivvvetdeetlkeRlakRaangd 123
                 +++vv+++    l +Rl+kR  + +
  CDO72354.1  96 DLVVVLRCNHTMLWDRLEKRGYPLK 120
                 689999999***********88654 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     9e-06     0.006       1      36 [.      12      49 ..      12      71 .. 0.78
   2 ?    2.3   0.0      0.25   1.7e+02     103     123 ..      95     132 ..      90     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9e-06
                EEESTTSSHHHHHHHHHHHHT..SEEEEHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
         ADK  1 llGaPgaGKGtqaeklvkkyg..lahlstGdllRaevk 36
                + G+Pg+GK t ae l+++    l+h+  Gdl++++  
  CDO72354.1 12 VTGTPGTGKTTHAELLAQESPipLKHINVGDLVKEKNL 49
                57***************99651168********98764 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.25
                 ESEEEEEE--HHHHHHHHHT.................G CS
                 xxxxxxxxxxxxxxxxxxxx.................x RF
         ADK 103 ldlvleldvpeevlveRltg.................D 123
                  dlv+ l++++ +l +Rl +                 D
  CDO72354.1  95 ADLVVVLRCNHTMLWDRLEKrgyplkkiqenneaeimD 132
                 58899999999999999998777777777654444440 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00099      0.66       1      34 [.      10      43 ..      10      72 .. 0.77
   2 ?    6.0   0.0     0.015       9.8     119     149 ..      92     121 ..      76     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00099
                EEEEESTTSSHHHHHHHHHCCSTCEEEE-HHHHC CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvfeEpvdkw 34
                ivv G+ g GK+t ++lL+++ +++  +  v + 
  CDO72354.1 10 IVVTGTPGTGKTTHAELLAQESPIPLKHINVGDL 43
                89******************99876666555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.015
                 HCCH-SEEEEEE--HHHHHHHHHHCTTCCCT CS
         dNK 119 elakpdlliYLkasletclerikkRgreeek 149
                 e +  dl++ L+++  ++  r++kRg   +k
  CDO72354.1  92 ERW-ADLVVVLRCNHTMLWDRLEKRGYPLKK 121
                 334.8********************987654 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.3e-05     0.015       2      24 ..       8      30 ..       7      66 .. 0.86
   2 ?   -2.9   0.0       5.4   3.6e+03     164     178 ..     129     143 ..     115     170 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
                .EEEEE--TTSSHHHHHHHHHHH CS
       KTI12  2 pLvvltGlPssGKstrakeLaka 24
                p +v+tG P +GK+t a+ La++
  CDO72354.1  8 PVIVVTGTPGTGKTTHAELLAQE 30
                89****************99986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.4
                 HHHHHHHHHHTS--S CS
       KTI12 164 eilkaliekkklkpn 178
                 ei++++ie+ + + +
  CDO72354.1 129 EIMDVVIEEARSSYA 143
                 444444444433332 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00051      0.34      20      36 ..       8      24 ..       4      31 .. 0.85
   2 ?    3.3   0.0     0.068        45      62     118 ..     107     172 ..      97     181 .] 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00051
      ATPase 20 rvvlitGepGtGKtifa 36
                 v+ +tG+pGtGKt+ a
  CDO72354.1  8 PVIVVTGTPGTGKTTHA 24
                5899**********976 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.068
      ATPase  62 dlrenakslGwdlekleeegklaiidasesaeesaee.........kdkedleelieelaeaikei 118
                  l  + ++ G  l+k++e+++  i+d++ ++++s+ +         +++edle+ ++++ + i++ 
  CDO72354.1 107 MLWDRLEKRGYPLKKIQENNEAEIMDVVIEEARSSYApeivvelqsEGTEDLESNVSRIVQWIEAW 172
                 5667888899999***********999988877666677888855555555555555555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.3e-05     0.015      23      47 ..       5      30 ..       1     171 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-05
      AAA_16 23 rp.elvllsGesGvGKsslvrellra 47
                r  ++++++G +G+GK++ ++ l+++
  CDO72354.1  5 RKaPVIVVTGTPGTGKTTHAELLAQE 30
                334899**************999874 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.9e-05     0.019       3      58 ..       8      59 ..       6      88 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-05
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelile 58
                +++v+tG   +GKTt ++ l++e+ ++ ++i   +l +e++  ++      e++++
  CDO72354.1  8 PVIVVTGTPGTGKTTHAELLAQESPIPLKHINVGDLVKEKNLYEEYD----EEWQS 59
                799******************99998889998888888877543322....22222 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.9e-05     0.026      36      72 ..      10      46 ..       2      54 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.9e-05
      RuvB_N 36 vllyGpPGlGkttlakiiakelgvklkitsgPvleka 72
                ++++G PG Gktt a+++a+e  + lk+     l k+
  CDO72354.1 10 IVVTGTPGTGKTTHAELLAQESPIPLKHINVGDLVKE 46
                7899*****************9999887665555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   5.9e-05     0.039       9      26 ..       6      23 ..       2      33 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-05
      AAA_19  9 kekvllvtaGpGtGKTrv 26
                k++v++vt+ pGtGKT+ 
  CDO72354.1  6 KAPVIVVTGTPGTGKTTH 23
                7899************96 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00027      0.18       2      21 ..      10      29 ..       9      34 .. 0.87
   2 ?    0.5   0.0      0.75     5e+02     138     167 ..     116     146 ..      95     147 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00027
                EEEE--TTSSHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvle 21
                +++TG pG+GKtT  + +++
  CDO72354.1 10 IVVTGTPGTGKTTHAELLAQ 29
                89***********9887665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.75
                 SHHHHHHHT-TT-EEEE.--TTTTTTHHHHH CS
    NTPase_1 138 lalveeirerkdvkvfe.vteenrdalleei 167
                    +++i+e++++++++ v+ee r + + ei
  CDO72354.1 116 GYPLKKIQENNEAEIMDvVIEEARSSYAPEI 146
                 4457888888888888845566676666665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.6e-05     0.051       2      25 ..       7      31 ..       6      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-05
      AAA_24  2 klkiliyGpsgiGKTtlakel.gpk 25
                +  i+++G +g+GKTt a  l +++
  CDO72354.1  7 APVIVVTGTPGTGKTTHAELLaQES 31
                5789*************99886444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001     0.069      13      41 ..       5      32 ..       1      72 [. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
  Zeta_toxin 13 qerPklillgGqpGAGKselaellkdele 41
                ++ P +i++ G pG GK++ aell++e  
  CDO72354.1  5 RKAP-VIVVTGTPGTGKTTHAELLAQESP 32
                4555.57789**************99974 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011     0.075       3      24 ..       9      30 ..       7      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
     DUF2075  3 vvlVtGvaGtGKtvvllnllae 24
                v++VtG +GtGKt  +  l+ e
  CDO72354.1  9 VIVVTGTPGTGKTTHAELLAQE 30
                89***********877766665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00018      0.12      17      38 ..       6      27 ..       2      31 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      AAA_30 17 gdrvavltGpAGtGKttalkal 38
                ++ v v+tG +GtGKtt  + l
  CDO72354.1  6 KAPVIVVTGTPGTGKTTHAELL 27
                556899***********87766 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00052      0.35       1     157 [.      16     169 ..      16     170 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00052
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHH..HHSEEEEEE--HHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellk..ekgiviyLdvslee 97 
                 +G+GK+t ++llA++  +++  +      + +k+  e ++ e ++++   E ++l+el        a  GG++l+  + ++       +v+ L+++ + 
  CDO72354.1  16 PGTGKTTHAELLAQESPIPLKHINV-GDLVKEKNLYEEYD-EEWQSYTVDEDKLLDELEPL-----ASEGGIILDWHTCDIFPerWADLVVVLRCNHTM 107
                 699***********99888776642.22333345566665.55999999999999998777.....88899999999999998444577999******* PP

                 HHHHHHHTTSSGGGCSCHHHHHH.HHHHH.HHHHHHCC.SSCEEEECTSSHHHHHHHHHHHHH CS
         SKI  98 llerlkadkeRPllqekskeeel.leela.ereplyee.aadvvvdeseeskeevaeeileal 157
                 l +rl+++   Pl + ++++e++ ++    e +++y+  +   +  e +e+ e  +++i++++
  CDO72354.1 108 LWDRLEKRGY-PLKKIQENNEAEiMDVVIeEARSSYAPeIVVELQSEGTEDLESNVSRIVQWI 169
                 *****99999.7776555544331333333444444431333333333333377777777776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00023      0.15     129     152 ..       7      30 ..       1      42 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
       T2SSE 129 rglilvsGgTgsGKttllyallke 152
                   +i+v+G+ g+GKtt +  l +e
  CDO72354.1   7 APVIVVTGTPGTGKTTHAELLAQE 30 
                 5689************98877665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00023      0.15      25      50 ..       3      28 ..       1      32 [. 0.84
   2 ?   -2.3   0.0       2.6   1.7e+03     194     207 ..     133     146 ..     106     173 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
                G-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealg 50
                ++ +a v+ +tG+PG+Gk t  e l+
  CDO72354.1  3 TSRKAPVIVVTGTPGTGKTTHAELLA 28
                566899**************998776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
                 HHCSTTBTTB--EE CS
        MeaB 194 eleeekekeWrpkv 207
                  + ee+++++ p++
  CDO72354.1 133 VVIEEARSSYAPEI 146
                 33344444445544 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00022      0.14      42     103 ..       4      68 ..       1      76 [. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00022
       Rad17  42 srkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn...qksdfkgltekesrfl 103
                 srk  +++++G +G gk+t  + L++e  i l++   + ++ke +      ++ ++ t  e+++l
  CDO72354.1   4 SRKAPVIVVTGTPGTGKTTHAELLAQESPIPLKHINVGDLVKEKNLyeeYDEEWQSYTVDEDKLL 68 
                 4556699*********************9999887777777776654434456666666666655 PP

>> Arnt_C  Aminoarabinose transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0025       1.6      55      97 ..      85     127 ..      68     135 .. 0.90
   2 ?    1.4   0.0      0.36   2.4e+02      48      68 ..     156     176 ..     145     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0025
                 -SHHHHHHHHHCS-S-EEEE-HHHHHHHTT.TS--EEEEE-SS CS
      Arnt_C  55 ptleaFaarWredkkalalmspetyeeLkaqglpmrviardar 97 
                 +t + F +rW +   +l   ++  +++L+++g p++ i+++++
  CDO72354.1  85 HTCDIFPERWADLVVVLRCNHTMLWDRLEKRGYPLKKIQENNE 127
                 58899*********************************99875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.36
                 HSGGGSB-SHHHHHHHHHCS- CS
      Arnt_C  48 qepekwiptleaFaarWredk 68 
                 ++ e  + ++ +++++Wr+d+
  CDO72354.1 156 EDLESNVSRIVQWIEAWRKDR 176
                 55667788899*******987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00029      0.19       1      35 [.      10      50 ..      10      76 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00029
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall...kkl...klkkkdsvy 35
                  i+++G +g+GK+t a+ La++     k++   +l k++++y
    CDO72354.1 10 IVVTGTPGTGKTTHAELLAQESPiplKHInvgDLVKEKNLY 50
                  789**************999876222333444333334443 PP

>> RII_binding_1  RII binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.042        28      10      19 .]     130     139 ..     128     139 .. 0.90
   2 ?    5.3   0.1     0.041        27       1      13 [.     156     168 ..     156     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.042
  RII_binding_1  10 ivslVIqeAv 19 
                    i ++VI+eA+
     CDO72354.1 130 IMDVVIEEAR 139
                    889******8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.041
  RII_binding_1   1 deiEeaanRivsl 13 
                    +++E  ++Riv+ 
     CDO72354.1 156 EDLESNVSRIVQW 168
                    789********95 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00039      0.26       1      23 [.      10      33 ..      10      76 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrts.l 23
                     ivv G pG GK+t+   l+++s  
       CDO72354.1 10 IVVTGTPGTGKTTHAELLAQESpI 33
                     79***********98888877552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1256.70
//
Query:       CDO72355.1  [L=166]
Description: hypothetical protein BN946_scf184977.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.31s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1113.69
//
Query:       CDO72356.1  [L=187]
Description: hypothetical protein BN946_scf184977.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1261.61
//
Query:       CDO72357.1  [L=368]
Description: hypothetical protein BN946_scf184977.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   72.9   7.1    2.7e-20   72.9   7.1    2.6  3  PAPA-1    PAPA-1-like conserved region
  ------ inclusion threshold ------
      0.038   14.4   1.2      0.038   14.4   1.2    4.7  3  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> PAPA-1  PAPA-1-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4       1.2   1.1e+04      19      24 ..      11      16 ..       4      41 .. 0.57
   2 ?    0.6   0.3      0.11   9.9e+02      34      57 ..     118     141 ..     104     169 .. 0.52
   3 !   72.9   7.1     3e-24   2.7e-20       1      76 [.     189     274 ..     189     279 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
                HHHHHH CS
      PAPA-1 19 krleee 24
                   eee
  CDO72357.1 11 ESEEEE 16
                222222 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
                 XXXXXXXXXX..XXXXXXXXXXXX CS
      PAPA-1  34 kkqagkkkkkkkakaaaeaeeeee 57 
                 +++a++    +++++ +++e++++
  CDO72357.1 118 RRRAPRGSDIESEDEDDDEEDDDD 141
                 333333333322222222222222 PP

  == domain 3  score: 72.9 bits;  conditional E-value: 3e-24
                 XXXXHHHHHHHHHHHHHHHHHHHHHHXHHHHHHXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXX--S.-EEEEE-SS CS
      PAPA-1   1 EqalrraEmarrRknqsekrleeekaeTInkLLkkqagkkkkkkk.........akaaaeaeeeeeeaeeaerpap.liRwvsnkd 76 
                 E+al+r+E+ar+R+n++ek+le+ekaeTIn+LLkkq++ + k+++          +++a  e e+ee +e+  p p ++Rw+s+++
  CDO72357.1 189 EIALKREETARKRRNLTEKKLEDEKAETINRLLKKQSRARGKRNAlstaedkptPAENAPGEGEDEEVAENLAPPPtMFRWISRAQ 274
                 89**********************************99888887799998776633333344444444444456668******987 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -17.9  23.3         2   1.8e+04      48      50 ..      43      45 ..       1      97 [. 0.63
   2 ?   14.4   1.2   4.2e-06     0.038      18      64 ..     109     154 ..     100     171 .. 0.60
   3 ?   -1.4   2.9      0.36   3.2e+03      26      69 ..     198     231 ..     177     238 .. 0.51

  Alignments for each domain:
  == domain 1  score: -17.9 bits;  conditional E-value: 2
     PBP1_TM 48 ddd 50
                d d
  CDO72357.1 43 DAD 45
                222 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.2e-06
     PBP1_TM  18 akparkkasrrrr.rdddyddeyddeedDdddddeeeevprkgkkkkp 64 
                 ++++ +++srrr  r  d++   +de dD++ddd++   +  + +++ 
  CDO72357.1 109 TNNTPSRVSRRRApRGSDIES--EDEDDDEEDDDDSTSAATTAAGARA 154
                 344455555544325777777..6666666666666666555555554 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.36
     PBP1_TM  26 srrrrr..dddyddeyddeedDdddddeeeevprkgkkkkpprkkr 69 
                 +r+rr+  +               +d+  e++ r  kk++  r kr
  CDO72357.1 198 ARKRRNltEKKL------------EDEKAETINRLLKKQSRARGKR 231
                 333333222222............3444444555544444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 2432.71
//
Query:       CDO72358.1  [L=384]
Description: hypothetical protein BN946_scf184977.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2893.85
//
Query:       CDO72359.1  [L=315]
Description: hypothetical protein BN946_scf184977.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-20   73.1   0.1    2.8e-17   63.0   0.0    2.4  2  Cyclin_C_2  Cyclin C-terminal domain
    2.2e-09   37.1   0.4    4.8e-09   36.0   0.0    1.8  2  Cyclin_N    Cyclin, N-terminal domain
     0.0029   17.6   0.0     0.0061   16.6   0.0    1.6  1  TFIIB       Transcription factor TFIIB repeat
  ------ inclusion threshold ------
      0.029   14.5   2.2      0.065   13.4   2.3    1.5  2  Sec16_N     Vesicle coat trafficking protein Sec16 N-terminus
      0.071   13.5   0.2        0.2   12.0   0.2    1.7  1  POPLD       POPLD (NUC188) domain
        5.8    6.7   6.1        7.8    6.3   5.1    1.7  2  Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain


Domain annotation for each model (and alignments):
>> Cyclin_C_2  Cyclin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0015       4.4      24      66 ..      57      98 ..      47     116 .. 0.88
   2 !   63.0   0.0   9.5e-21   2.8e-17       1      78 [.     137     213 ..     137     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
  Cyclin_C_2 24 iekaykrareilkssalltDayflytPsqIalaallladekla 66
                +e+++++a ++lk + +l + ++   P  ++l al+la ++ +
  CDO72359.1 57 PEEVEATAATYLK-RFYLKNTVMDWHPKNVMLTALFLATKTTN 98
                578899999****.************************98765 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 9.5e-21
  Cyclin_C_2   1 hPfRpLeGflldLkalgkslekriekaykrareilkssalltDayflytPsqIalaallladeklaerYleeklgkee 78 
                 h +R+L+G++ld+++l++++ + ++kay+ a  +++ +a ltDa f+ytPsqIala+++la  ++a+++ + k++ + 
  CDO72359.1 137 HSHRALWGIWLDMQSLPDVSIEVLSKAYEAALGHVR-AARLTDAEFIYTPSQIALACFSLASPAMASSWAHAKFPLTP 213
                 889*********************************.*************************************8753 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.6e-12   4.8e-09      38     125 ..      47     132 ..      37     134 .. 0.92
   2 ?   -2.8   0.1       1.7   5.1e+03      75      85 ..     187     197 ..     183     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.6e-12
                 HHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT- CS
    Cyclin_N  38 lvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfd 125
                 + +++ +f++ +e+ ++a++yl Rf+ k+ v   + + v++t+L+lA+K+ +  p +le ++  +      +++l++E l+ + L fd
  CDO72359.1  47 IAQLCGHFRFPEEVEATAATYLKRFYLKNTVMDWHPKNVMLTALFLATKTTNH-PISLEAYASHIP-RTAPSDVLDLEFLVAQSLGFD 132
                 7899**********************************************887.999999998877.5669***************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                 HHHHHHHHHHH CS
    Cyclin_N  75 lvgatcLllAa 85 
                  ++++c +lA+
  CDO72359.1 187 QIALACFSLAS 197
                 6899*****98 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06    0.0061       1      58 [.      47     104 ..      47     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                 HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HH CS
       TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqk 58 
                 i +++ +  +pe+V+  A   +k+ + ++++    p++++ ++l++A++  ++  +++
  CDO72359.1  47 IAQLCGHFRFPEEVEATAATYLKRFYLKNTVMDWHPKNVMLTALFLATKTTNHPISLE 104
                 6789************************************************999875 PP

>> Sec16_N  Vesicle coat trafficking protein Sec16 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.4   7.1e+03      79     108 ..      91     120 ..      89     121 .. 0.77
   2 ?   13.4   2.3   2.2e-05     0.065     139     185 ..     264     313 ..     217     315 .] 0.67

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.4
     Sec16_N  79 Ffssaskseskkeeepidkltrkstsqvld 108
                 F++ + ++++ + e  +++++r + s+vld
  CDO72359.1  91 FLATKTTNHPISLEAYASHIPRTAPSDVLD 120
                 677777777777666668999999999998 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.2e-05
     Sec16_N 139 kqeeksaSeedlaarweaelsd.evpeespveddLAerw..kafLDdDDD 185
                 k+++++  ++d++ r +ae +  + +e  p  ++LA +    a+LDdDDD
  CDO72359.1 264 KKQQEQERKADEKRRRKAEAARiSMEESDPFGSELARKAaaTAELDDDDD 313
                 34444566778888888888888888888889****88622579***988 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   6.6e-05       0.2      41      81 ..     250     290 ..     237     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
       POPLD  41 pyfPddypdtkagekeekeeeeeaeekwerkPpskRvnysk 81 
                    P++ p+t+a+ k ++e+e++a ek  rk ++ R++ ++
  CDO72359.1 250 CKNPEKIPGTNAYIKKQQEQERKADEKRRRKAEAARISMEE 290
                 56799*******************************99865 PP

>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   3.9e+03      60      80 ..      84     104 ..      49     125 .. 0.56
   2 ?    6.3   5.1    0.0026       7.8     112     160 ..     236     286 ..     230     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
  Sde2_N_Ubi  60 sdvslssllassadsellslr 80 
                 + +  + +la++++++ +sl+
  CDO72359.1  84 NVMLTALFLATKTTNHPISLE 104
                 333333333333333333333 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0026
  Sde2_N_Ubi 112 nndscRdldGrRLrtvkeaka...laeylaekperekkekearrkrleavve 160
                 + ++ R++d rRLr  k+  +    + y++++ e+e+k+ e+rr+++ea   
  CDO72359.1 236 DVEAVREVD-RRLRLCKNPEKipgTNAYIKKQQEQERKADEKRRRKAEAARI 286
                 567888888.99999988766233589*********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2249.94
//
Query:       CDO72360.1  [L=1416]
Description: hypothetical protein BN946_scf184977.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-15   56.7   0.0      3e-15   55.6   0.0    1.6  1  GYF       GYF domain
     0.0028   17.4   0.1     0.0058   16.4   0.1    1.6  1  GYF_2     GYF domain 2


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   3.4e-19     3e-15       1      43 [.    1116    1158 ..    1116    1160 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.4e-19
         GYF    1 WeYkdpqgevqGPFsseeMqkWykagYFkdgllvrrvedsefy 43  
                  W+Y+dp+g+v+GP++++ Mq+Wy++g ++++l+vrr+edse++
  CDO72360.1 1116 WFYRDPKGVVHGPWKASLMQAWYRDGLLPPDLPVRREEDSEYT 1158
                  *************************************999986 PP

>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   6.5e-07    0.0058       1      47 [.    1116    1163 ..    1116    1164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.5e-07
       GYF_2    1 Wyyad.ngqqqGPfsleeLkelaasgeitpdtlVWreGmddWkpasev 47  
                  W+y+d +g  +GP   + +++++++g + pd  V+re  ++++ ++++
  CDO72360.1 1116 WFYRDpKGVVHGPWKASLMQAWYRDGLLPPDLPVRREEDSEYTLLKDL 1163
                  *****888*********************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.24s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 9244.16
//
Query:       CDO72361.1  [L=936]
Description: hypothetical protein BN946_scf184977.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-16   58.9   0.4    2.9e-09   36.9   0.0    2.9  3  Amidohydro_3  Amidohydrolase family
    2.7e-14   53.2   0.0      1e-12   48.1   0.0    2.8  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.1e-08   0.00082       3      64 ..     152     208 ..     150     237 .. 0.84
   2 !   36.9   0.0   3.3e-13   2.9e-09     363     469 ..     397     485 ..     361     487 .. 0.77
   3 ?   -2.0   0.0      0.21   1.9e+03       1      15 [.     599     613 ..     599     613 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.1e-08
  Amidohydro_3   3 iDakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltavrdqagttpkgrwivge 64 
                   iDa+Gr v PG vD H+H+    + + r+++++++r+  ++ +  ++ + a+       i g+
    CDO72361.1 152 IDAQGRWVSPGIVDLHSHIGVDASPAlRGTSDDNSRKGPVQPTSLVLPGSANA------IGGQ 208
                   9*****************55555888899999999999999999999888887......5444 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 3.3e-13
  Amidohydro_3 363 llnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelae 459
                   l ++g++v++ sD        +p + + + ++ + +++++     l+ + ala++T++pA+++g+++r G + +G+dAD+v++d  pl++ ++    
    CDO72361.1 397 LADNGLHVIMKSD--------HPVLNSRFLLYEAQQAYYY----GLPHNVALAAVTTTPARVMGQDHRIGYVSEGYDADIVLWDSHPLALGAT---- 477
                   5666666666666........3333333333333332222....3566779****************************************99.... PP

  Amidohydro_3 460 arvrltvvdG 469
                     + ++++dG
    CDO72361.1 478 --PQQVWIDG 485
                   ..99999998 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.21
  Amidohydro_3   1 eviDakGrlvlPGFv 15 
                   + i+++G+  +PG+v
    CDO72361.1 599 QLINLEGGAIAPGLV 613
                   68***********98 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   1.1e-16     1e-12       2     338 ..     159     482 ..     158     503 .. 0.68
   2 ?   -0.4   0.0     0.064   5.8e+02     216     299 ..     813     898 ..     680     903 .. 0.72

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.1e-16
                   EEE-EEEEEEECETTECSSS..........GHHHHH...........STTHHHHHHHHHHHHHHH....HTTEEEEEEEEHSSTH.........HHH CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga..........tledwl...........vppetaaealesgiktal....ksGtttvadmgattst.........gie 64 
                   v PG++D+H H+  +    a                           +p++  a + +  + ++     ks+t++ ++ ++ t +           +
    CDO72361.1 159 VSPGIVDLHSHIGVD----AspalrgtsddN----SrkgpvqptslvLPGSANAIGGQGIVIKLRrptdKSPTGMLLENPYETNRtlydpavafRYR 247
                   889999999999644....333345534440....25555556666588888888888888776633336999999999998888999997776667 PP

                   HHHHHHHTSSSEEEEEEESSEGGS....GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCH CS
  Amidohydro_1  65 alleaaeelplglrilggkvsldr....gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkg 157
                    ++ a+ e   ++r + g++ +d     ++a     ++++  ++     ++ka     v    ++  +f++++  eal  + +  ++v+ H+ et  
    CDO72361.1 248 QMKHACGE---NPRRIYGFTRMDIawgfREAYEKARKIKQSQDEY----CAKA-----VRGEWAGLGEFPEDLQWEALVDVLRGRVKVQNHCYETID 332
                   77778888...9999999999998887644444444444444444....6553.....444445555666665444554555669999999999887 PP

                   HHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE.....HHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECT CS
  Amidohydro_1 158 evedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagva.....hcpfsnsilrsgrealrkaldeGvkvglgtDga 249
                      d+++      e+++               +  ah ++l p++++   +++    va        + +s+ +s+  a r + d+G++v++ +D+ 
    CDO72361.1 333 LD-DMVRLTN---EFKFSIAA-----------FHHAHETYLVPETLKA--AYGHPPAVAlfatnARYKRESYRGSEF-APRILADNGLHVIMKSDHP 411
                   76.8888888...77444444...........3335556666553333..222233333444444456677777777.55555566*********** PP

                   TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEE CS
  Amidohydro_1 250 asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvi 338
                     ++ + ll e  +a+            +gl+ + al+++T+ +A+++g d+++G + +G+dAD+v++d ++      l+   ++++v+
    CDO72361.1 412 VLNSRF-LLYEAQQAY-----------YYGLPHNVALAAVTTTPARVMGQDHRIGYVSEGYDADIVLWDSHP------LALGATPQQVW 482
                   ******.889999999...........999**************************************8865......22233334444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.064
                   E...HHHHHHHH...........SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT CS
  Amidohydro_1 216 a...hcpfsnsi...........lrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalg 298
                         pf+++            ++++ +a+ +a++  v vg+g+ +a + ++  l  ++++a++        ++ g+++ ++al++a++n  k lg
    CDO72361.1 813 IispTRPFPEEWekrrinpgpplSETNAIAVLQAHN--VTVGVGVVEAWMARNTRL--DIAWAAL--------ESGGQIEKADALALASTNVEKLLG 897
                   255545555555555555555555555555555544..777777777766666644..5666662........346889999999999999999988 PP

                   - CS
  Amidohydro_1 299 l 299
                   +
    CDO72361.1 898 F 898
                   7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6501.53
//
Query:       CDO72362.1  [L=279]
Description: hypothetical protein BN946_scf184977.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-14   52.2  17.4     0.0042   17.5   0.1    4.5  4  zf-C2H2        Zinc finger, C2H2 type
    7.9e-10   38.7  16.4      0.082   13.8   0.2    4.6  4  zf-C2H2_4      C2H2-type zinc finger
     0.0046   16.9   9.9       0.37   10.9   0.2    3.7  4  zf-C2H2_6      C2H2-type zinc finger
     0.0062   16.6   3.9       0.68   10.1   0.0    3.7  4  zf_ZIC         Zic proteins zinc finger domain
  ------ inclusion threshold ------
      0.027   14.6   5.8       0.79    9.8   0.1    3.2  3  zf-C2H2_aberr  Aberrant zinc-finger
      0.059   13.1   1.7       0.11   12.1   0.9    1.7  2  BDHCT_assoc    BDHCT-box associated domain on Bloom syndrome 
      0.063   13.7   1.1         35    5.0   0.0    3.7  3  zf-met         Zinc-finger of C2H2 type
       0.33   11.6   5.8         17    6.1   0.0    3.7  3  FOXP-CC        FOXP coiled-coil domain
       0.79    9.5   9.8        5.1    7.0   0.0    3.9  4  zf-C2H2_11     zinc-finger C2H2-type
        3.6    8.0   7.5         22    5.5   0.8    3.7  4  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
        6.4    6.6   7.6         36    4.2   0.0    4.1  4  zf-H2C2_5      C2H2-type zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00026      0.43       7      23 .]      27      43 ..      27      43 .. 0.97
   2 !   16.6   0.2   4.9e-06    0.0079       3      23 .]      82     105 ..      80     105 .. 0.92
   3 !   14.3   4.5   2.6e-05     0.043       1      23 []     111     136 ..     111     136 .. 0.97
   4 !   17.5   0.1   2.5e-06    0.0042       5      23 .]     233     252 ..     231     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
                TEEESSHHHHHHHHHCC CS
     zf-C2H2  7 gksFkrksnLkrHirtH 23
                gk+F+++  L++H+++H
  CDO72362.1 27 GKVFSQQKGLRAHLKIH 43
                79*************99 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.9e-06
                 ET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 Cp..dCgksFkrksnLkrHirt.H 23 
                 C+  +Cgk Fk+k  L++H ++ H
  CDO72362.1  82 CDvdGCGKDFKSKKALNTHHNIaH 105
                 88889***************9988 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2.6e-05
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ++Cp  +C + F  k++L+rH+ + H
  CDO72362.1 111 FVCPhdHCRRAFGYKHLLQRHLAKlH 136
                 89********************9999 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 2.5e-06
                 TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                 dC ++F+r ++L+rH++  H
  CDO72362.1 233 DCQYVFSRAYDLRRHLQAeH 252
                 9***************9877 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0019         3       7      23 ..      27      43 ..      27      44 .. 0.93
   2 !   13.8   0.2   5.1e-05     0.082       2      22 ..      81     103 ..      80     105 .. 0.85
   3 !   10.7   4.4    0.0005      0.82       1      24 []     111     136 ..     111     136 .. 0.90
   4 !   11.5   0.1   0.00028      0.45       6      24 .]     234     252 ..     232     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
   zf-C2H2_4  7 gksFsskkaLlrHlkth 23
                gk+Fs +k+L+ Hlk h
  CDO72362.1 27 GKVFSQQKGLRAHLKIH 43
                689************99 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.1e-05
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkt 22 
                 +C++  Cgk F+skkaL++H + 
  CDO72362.1  81 ICDVdgCGKDFKSKKALNTHHNI 103
                 688888*************9765 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0005
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 f Cp+  C++ F  k+ L+rHl++ H
  CDO72362.1 111 FVCPHdhCRRAFGYKHLLQRHLAKLH 136
                 7899999*****888889****9988 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00028
   zf-C2H2_4   6 CgksFsskkaLlrHlkthH 24 
                 C+ +Fs+ ++L+rHl++ H
  CDO72362.1 234 CQYVFSRAYDLRRHLQAEH 252
                 9***************998 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.3    0.0012       1.9       8      24 ..      27      43 ..      27      46 .. 0.91
   2 !   10.9   0.2   0.00023      0.37       7      22 ..      87     103 ..      81     107 .. 0.83
   3 ?   -3.1   0.1       5.4   8.9e+03      10      15 ..     141     146 ..     140     147 .. 0.85
   4 ?    2.1   0.1      0.13   2.1e+02       7      24 ..     234     252 ..     233     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
   zf-C2H2_6  8 sksFpslqaLggHkksH 24
                +k+F+ ++ L+ H+k H
  CDO72362.1 27 GKVFSQQKGLRAHLKIH 43
                79************987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00023
   zf-C2H2_6   7 CsksFpslqaLggHk.k 22 
                 C+k F+s +aL++H  +
  CDO72362.1  87 CGKDFKSKKALNTHHnI 103
                 **************655 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.4
   zf-C2H2_6  10 sFpslq 15 
                 sF+s++
  CDO72362.1 141 SFSSGD 146
                 8***98 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.13
   zf-C2H2_6   7 CsksFpslqaLggHk.ksH 24 
                 C  +F+  ++L+ H+ ++H
  CDO72362.1 234 CQYVFSRAYDLRRHLqAEH 252
                 6669**********98878 PP

>> zf_ZIC  Zic proteins zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.031        50      24      44 ..      87     107 ..      83     108 .. 0.94
   2 ?    0.8   0.3      0.34   5.6e+02      20      40 ..     114     134 ..     110     137 .. 0.83
   3 !   10.1   0.0   0.00042      0.68      15      42 ..     225     252 ..     213     253 .. 0.84
   4 ?   -2.2   0.0       2.9   4.7e+03       5      19 ..     257     271 ..     255     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.031
                 ----BSSHHHHHHHHHCTTT- CS
      zf_ZIC  24 CsktFstmhelVtHltveHVG 44 
                 C+k F++   l tH  + H G
  CDO72362.1  87 CGKDFKSKKALNTHHNIAHLG 107
                 *******************98 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
                 S-------BSSHHHHHHHHHC CS
      zf_ZIC  20 pkkpCsktFstmhelVtHltv 40 
                 p+  C + F+  h l  Hl+ 
  CDO72362.1 114 PHDHCRRAFGYKHLLQRHLAK 134
                 6678*******9999999875 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00042
                 TT-SSS-------BSSHHHHHHHHHCTT CS
      zf_ZIC  15 eeqgspkkpCsktFstmhelVtHltveH 42 
                  + ++ k  C+ +Fs+ ++l  Hl  eH
  CDO72362.1 225 GSSSKRKNDCQYVFSRAYDLRRHLQAEH 252
                 566788999******************9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.9
                 ---B---B--TT-SS CS
      zf_ZIC   5 kqelsCkWideeqgs 19 
                  + ++ +W+ +e+++
  CDO72362.1 257 ERAMVDEWVSSEKSR 271
                 5678889*9998865 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00049      0.79     142     161 ..      81     100 ..      75     107 .. 0.85
   2 ?    4.0   0.5     0.029        48      27      67 ..     101     138 ..      97     144 .. 0.75
   3 ?    2.8   0.1     0.072   1.2e+02       6      32 ..     232     257 ..     230     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
  zf-C2H2_aberr 142 yCripGCgkrfkslmaYkYh 161
                     C + GCgk fks  a   h
     CDO72362.1  81 ICDVDGCGKDFKSKKALNTH 100
                    6************9998877 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.029
  zf-C2H2_aberr  27 hslytnsefslkCpvrkCsesivelentelleehlekehaa 67 
                    h++      +++Cp  +C      +  + ll+ hl k ha 
     CDO72362.1 101 HNIAHLGRRDFVCPHDHC---RRAFGYKHLLQRHLAKLHAP 138
                    555555557889999999...55678889999999999985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.072
  zf-C2H2_aberr   6 kaCdlkyssvlglrrhlveykhslytn 32 
                    ++C+  +s+ + lrrhl+ ++h ++++
     CDO72362.1 232 NDCQYVFSRAYDLRRHLQ-AEHGIHVE 257
                    68**************95.68877765 PP

>> BDHCT_assoc  BDHCT-box associated domain on Bloom syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   1.7e+03      28      59 ..     131     163 ..     119     178 .. 0.67
   2 ?   12.1   0.9   6.9e-05      0.11      28      69 ..     199     240 ..     180     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
  BDHCT_assoc  28 elklphlpsnslsteecl.ltttpgktgfsatk 59 
                  +l+ +h p +s+s+++    ++ p+ +g   ++
   CDO72362.1 131 HLAKLHAPDQSFSSGDEGnDASKPDSSGEVDAH 163
                  566778888998887654145566666655444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.9e-05
  BDHCT_assoc  28 elklphlpsnslsteeclltttpgktgfsatkknlserplfs 69 
                  +  +phlp++ l+t+  + ttt+  tg+s+++kn+++ +++ 
   CDO72362.1 199 QCPFPHLPPSFLPTSTEQETTTSTLTGSSSKRKNDCQYVFSR 240
                  5679******************************99887765 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.44   7.1e+02       8      21 ..      28      41 ..      27      44 .. 0.83
   2 ?    5.0   0.0     0.021        35       6      19 ..      87     100 ..      85     100 .. 0.96
   3 ?    3.8   0.0     0.049        80       6      21 ..     234     249 ..     232     250 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.44
      zf-met  8 vtfnsesqlksHlq 21
                ++f+ ++ l++Hl+
  CDO72362.1 28 KVFSQQKGLRAHLK 41
                68999999****98 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.021
      zf-met   6 CnvtfnsesqlksH 19 
                 C + f+s+++l++H
  CDO72362.1  87 CGKDFKSKKALNTH 100
                 99***********9 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.049
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C+ +f+   +l+ Hlq
  CDO72362.1 234 CQYVFSRAYDLRRHLQ 249
                 ***************8 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.082   1.3e+02       7      30 ..      82     105 ..      80     111 .. 0.89
   2 ?    2.7   0.4      0.12     2e+02       7      34 ..     113     140 ..     109     144 .. 0.85
   3 ?    6.1   0.0      0.01        17      11      33 ..     233     255 ..     232     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.082
     FOXP-CC   7 CkWPgCekvledveeflkhlnseH 30 
                 C+  gC k +++ +++  h n +H
  CDO72362.1  82 CDVDGCGKDFKSKKALNTHHNIAH 105
                 77779**************99999 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
     FOXP-CC   7 CkWPgCekvledveeflkhlnseHaldd 34 
                 C    C +++   + +++hl + Ha+d+
  CDO72362.1 113 CPHDHCRRAFGYKHLLQRHLAKLHAPDQ 140
                 666679999999999*********9986 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.01
     FOXP-CC  11 gCekvledveeflkhlnseHald 33 
                 +C+ v++ + ++ +hl+ eH + 
  CDO72362.1 233 DCQYVFSRAYDLRRHLQAEHGIH 255
                 6*******************864 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.3   2.1e+03      14      26 ..      30      42 ..      27      43 .. 0.83
   2 ?    7.0   0.0    0.0031       5.1      10      28 ..      87     105 ..      85     105 .. 0.97
   3 ?    0.9   1.4      0.25   4.1e+02       9      25 ..     117     133 ..     116     136 .. 0.86
   4 ?    4.6   0.1     0.017        28       9      26 ..     233     250 ..     226     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
  zf-C2H2_11 14 ftSqlsLsRHlfI 26
                f+ q  L+ Hl I
  CDO72362.1 30 FSQQKGLRAHLKI 42
                8889999***988 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0031
  zf-C2H2_11  10 CGlcftSqlsLsRHlfIvH 28 
                 CG  f S+ +L+ H  I H
  CDO72362.1  87 CGKDFKSKKALNTHHNIAH 105
                 ******************9 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.25
  zf-C2H2_11   9 eCGlcftSqlsLsRHlf 25 
                 +C + f  +  L+RHl 
  CDO72362.1 117 HCRRAFGYKHLLQRHLA 133
                 79999999999****95 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.017
  zf-C2H2_11   9 eCGlcftSqlsLsRHlfI 26 
                 +C   f+ +  L+RHl+ 
  CDO72362.1 233 DCQYVFSRAYDLRRHLQA 250
                 78999999999****985 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         1   1.7e+03       9      22 ..      28      41 ..      27      41 .. 0.88
   2 ?    5.5   0.8     0.013        22       7      20 ..      87     100 ..      87     102 .. 0.96
   3 ?   -0.9   0.1       1.4   2.2e+03       6      21 ..     117     132 ..     116     133 .. 0.81
   4 ?    3.7   0.0     0.049        81       7      21 ..     234     248 ..     233     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1
                 BBBSSHHHHHCCTT CS
  zf-C2H2_jaz  9 KyFksenaldnHlk 22
                 K F+ ++ l++Hlk
   CDO72362.1 28 KVFSQQKGLRAHLK 41
                 78999999****97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
                  TTBBBSSHHHHHCC CS
  zf-C2H2_jaz   7 CdKyFksenaldnH 20 
                  C K Fks +al +H
   CDO72362.1  87 CGKDFKSKKALNTH 100
                  99***********9 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.4
                  TTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   6 lCdKyFksenaldnHl 21 
                  +C + F   + l+ Hl
   CDO72362.1 117 HCRRAFGYKHLLQRHL 132
                  8999998888888887 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.049
                  TTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHl 21 
                  C+  F+ +++l+ Hl
   CDO72362.1 234 CQYVFSRAYDLRRHL 248
                  9*************8 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.31   5.1e+02      15      24 ..      35      43 ..      31      44 .. 0.82
   2 ?    3.2   0.3     0.045        73      12      24 ..     124     136 ..     123     138 .. 0.81
   3 ?   -3.5   0.1       5.6   9.1e+03      19      25 ..     163     169 ..     158     170 .. 0.77
   4 ?    4.2   0.0     0.022        36      15      24 ..     243     252 ..     234     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.31
   zf-H2C2_5 15 nLkRHlrrkH 24
                 L+ Hl+ +H
  CDO72362.1 35 GLRAHLK-IH 43
                5899***.*9 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.045
   zf-H2C2_5  12 wksnLkRHlrrkH 24 
                 +k  L+RHl++ H
  CDO72362.1 124 YKHLLQRHLAKLH 136
                 56679*****888 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.6
   zf-H2C2_5  19 HlrrkHt 25 
                 H  ++H+
  CDO72362.1 163 HSHNIHE 169
                 9999996 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.022
   zf-H2C2_5  15 nLkRHlrrkH 24 
                 +L+RHl++ H
  CDO72362.1 243 DLRRHLQAEH 252
                 7*****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2129.20
//
Query:       CDO72363.1  [L=498]
Description: hypothetical protein BN946_scf184977.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-24   84.8   0.0      1e-23   84.3   0.0    1.2  1  Sin_N     Sin-like protein conserved region


Domain annotation for each model (and alignments):
>> Sin_N  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   5.8e-28     1e-23       2     207 ..       4     242 ..       3     291 .. 0.70

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 5.8e-28
       Sin_N   2 dDpVveeidVylskslsdkLyllQYPlrpa.....drpyddeqvkevrvkpkqqklelelaidtesknydknkgeqlalaadgk........tkasekt 87 
                 +D++v +i+V+l+++l+++L+l QYPl ++       +   ++  ++rvkpk ++le+++++dt+ +  + ++ ++l +a  ++        +k +++ 
  CDO72363.1   4 EDRLVSVIPVHLTNALEPNLHLHQYPLLTRplevpPSAAASGKRIRARVKPKVKRLEVHVPVDTRPEVWNAERSKELGAARVEDdkeknqelAKVKQRE 102
                 79************************98763322212223344445*************************9999999766666777766652222222 PP

       Sin_N  88 .fsselmdkqtlsssraldasnyavGilkdgelhltPlegilqlrpsfsyldkadkkkkeklsqqeskaen..........eeqdeeeee......... 166
                   + +l + + + s++  ++  y+ G+l++g lhl+P++ + q+rp+++y+d  ++k++  +  ++s++++          +       +         
  CDO72363.1 103 gEEPRLTE-VRMRSEQVPQMGVYVLGVLREGRLHLHPISETHQFRPTLTYMDMHTRKTRR-TRGDDSDEDDgpppdpdepvP-------Apapkkekkp 192
                 23333444.6666775559*********************************99999993.333344444434444444442.......1444444457 PP

       Sin_N 167 ...akavtvkfkr.......aeterqkkareq........SyallkkkeeeEpWiklev 207
                    ak+v+v++++       +          q         + ++  +ee+E+W + e+
  CDO72363.1 193 pgdAKEVQVAIRKtgevsglQ---------FQggmtqvrrDMLTMIHAEEDEQWDDYEY 242
                 777888999888844443321.........22223333335667777778888877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3462.96
//
Query:       CDO72364.1  [L=838]
Description: hypothetical protein BN946_scf184977.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-07   30.9  10.3     0.0042   17.3   3.0    3.8  3  LIM             LIM domain


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   3.0   2.4e-07    0.0042      19      40 ..     534     555 ..     504     573 .. 0.81
   2 !   14.2   0.1   2.1e-06     0.037       1      29 [.     641     671 ..     641     680 .. 0.93
   3 ?    1.4   0.1     0.021   3.7e+02      32      53 ..     688     709 ..     686     712 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.4e-07
                 TEEEETTTSB-TTT-SB-CTT. CS
         LIM  19 dkvwHeeCFtCsdCqkeLkegs 40 
                  k++H +CF+C++C++ +++ +
  CDO72364.1 534 PKTYHASCFRCTVCDQLFQDSE 555
                 589*************998865 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.1e-06
                 -TTT--BE-..TTTEEEEETTEEEETTTSB- CS
         LIM   1 CagCnkkia..drelvlkaldkvwHeeCFtC 29 
                 C gC+k+++  +r +v   ++ +wH +C++C
  CDO72364.1 641 CPGCHKSVSpmERGVVPGPQGSRWHAACLVC 671
                 9********8888899999************ PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.021
                 T-SB-CTT.CEEETTEEEEHHH CS
         LIM  32 CqkeLkegsfyekdgklyCkkd 53 
                 C+k+L++   + kdg + C+++
  CDO72364.1 688 CGKKLDSAAKTDKDGGVWCREC 709
                 9999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5340.91
//
Query:       CDO72365.1  [L=253]
Description: Glycoside Hydrolase Family 131 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-59  199.5   0.0    8.5e-59  199.3   0.0    1.0  1  GH131_N   Glycoside hydrolase 131 catalytic N-terminal domain


Domain annotation for each model (and alignments):
>> GH131_N  Glycoside hydrolase 131 catalytic N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   0.0   4.7e-63   8.5e-59       1     256 [.      18     249 ..      18     250 .. 0.94

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 4.7e-63
     GH131_N   1 vlfDGRvpanataadfdkls.tsqvkpyltvvkgs...esaseyltlskeakspadksktkvlkvkiddkSiFvpgenaqtgfrRaellpqkdelndai 95 
                 +l+DGR++++++aadfd++s ++qv++y+t++ g+   e+as++ltl +e+k+pa++++++++kvki+ +S +    n+   + R+ellpq++    + 
  CDO72365.1  18 ILWDGRFNNYTSAADFDQWSwSNQVGQYQTYIYGNlhgEKASSWLTLGSEYKNPATTAEKQGVKVKINGSSTW----NGG-PMLRTELLPQTT----NS 107
                 79******************99*************9999**********************************....887.9**********9....45 PP

     GH131_N  96 eeGvttfhfSvkkdearplnltheyqivflEsaysshvfdlkvgtpfgsdtaradtlkvldaalktlfstpfekgtwhNFavevdfdastlqvyyStge 194
                  +G+ +fh+S++  + +p++  +e+qivf+E     h+ d+k+g+++g+ +  adtl+v  ++ k+++s++ +kgtw+NF +ev+   s  ++++Stg+
  CDO72365.1 108 LTGHLYFHVSLQIPTVNPPDPAYEHQIVFWE----GHYADIKYGQLSGQ-NGVADTLQV-ITGGKSIWSVQPVKGTWYNFILEVG---SPGGLWVSTGS 197
                 58*****************************....9*********9998.5667*****.*************************...*********** PP

     GH131_N 195 apLkkvtepiandtsggggefhfgllklplanqsdvvhdGiqesgiqegliysGvfvEdstd 256
                 + L+kv+  + n ++  g+++h+g l+lp         +G+ ++ ++ +  y+G++vEds  
  CDO72365.1 198 SSLQKVYSGSLNGNG--GTDWHIGALRLP--------LNGVTQQITETDFWYGGIYVEDSGP 249
                 ***********9998..447*********........6777777688899*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1761.05
//
Query:       CDO72366.1  [L=420]
Description: hypothetical protein BN946_scf184977.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3085.72
//
Query:       CDO72367.1  [L=267]
Description: hypothetical protein BN946_scf184977.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1954.00
//
Query:       CDO72368.1  [L=218]
Description: hypothetical protein BN946_scf184977.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-20   70.4   0.5    1.8e-19   69.6   0.5    1.5  1  DnaJ             DnaJ domain
  ------ inclusion threshold ------
       0.17   11.7   0.0       0.26   11.0   0.0    1.2  1  DUF445           Protein of unknown function (DUF445)
       0.65   10.3   5.8        1.2    9.5   5.8    1.4  1  DUF456           Protein of unknown function (DUF456)
        3.6    7.5   7.2        1.9    8.4   0.1    3.0  3  Rick_17kDa_Anti  Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.5   4.1e-23   1.8e-19       1      63 []       6      73 ..       6      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 4.1e-23
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTT..TS..CCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPD..kn..pkdp.eaeekFkeineAyevLsdpekRkqYD 63
                dyY++Lgvs+ a+ +eI+ aY+k +l+ HPD   n  p+++  a+e+F+ +++Ay vLsdp++Rk+YD
  CDO72368.1  6 DYYKLLGVSQIATVEEIRTAYKKESLRTHPDrlVNasPEEKqAATERFQAVADAYFVLSDPTRRKEYD 73
                8******************************6623665555699***********************9 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.8e-05      0.26     330     361 ..     130     161 ..     124     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.8e-05
      DUF445 330 leelIelivgkeLqaIrinGtlvGgliGllly 361
                  eel+   v + L + +++G+++G+ iG++++
  CDO72368.1 130 FEELLRPEVERHLPWWTWLGAVCGAGIGFIIA 161
                 6888889999******************9986 PP

>> DUF456  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.8   0.00026       1.2      60     100 ..     143     183 ..     139     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00026
      DUF456  60 skrgligaivGaivGffllpplGlllgpflgaflgEllrar 100
                 ++++ +ga+ Ga +Gf++  ++Gl++g+++g  lg +  a+
  CDO72368.1 143 PWWTWLGAVCGAGIGFIIANIPGLMVGMYAGNRLGAIRDAK 183
                 689999*********98888999999999998888744333 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00042       1.9      21      39 ..     144     162 ..     140     163 .. 0.82
   2 ?    0.9   0.4     0.094   4.2e+02       9      28 ..     168     190 ..     167     197 .. 0.75
   3 ?    0.2   0.2      0.15   6.9e+02      24      33 ..     206     215 ..     204     218 .] 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00042
  Rick_17kDa_Anti  21 ggrvlGavvGAaaGavaGn 39 
                      ++++lGav GA++G +++n
       CDO72368.1 144 WWTWLGAVCGAGIGFIIAN 162
                      7889999999999988776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.094
  Rick_17kDa_Anti   9 aGgvaGaaigg...gggrvlGav 28 
                      +G +aG+++g+    +g++++av
       CDO72368.1 168 VGMYAGNRLGAirdAKGKSVAAV 190
                      56678888877777788888887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.15
  Rick_17kDa_Anti  24 vlGavvGAaa 33 
                      +++ v+GAaa
       CDO72368.1 206 LAAKVLGAAA 215
                      5677888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1716.88
//
Query:       CDO72369.1  [L=934]
Description: hypothetical protein BN946_scf184977.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 6099.25
//
Query:       CDO72370.1  [L=228]
Description: hypothetical protein BN946_scf184977.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-38  132.8   0.0    1.8e-19   70.2   0.0    2.0  2  Formyl_trans_N   Formyl transferase
  ------ inclusion threshold ------
      0.096   12.6   0.1       0.16   11.9   0.1    1.3  1  MannoseP_isomer  Mannose-6-phosphate isomerase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   1.5e-20   1.3e-16       2     101 ..      12     120 ..      11     124 .. 0.89
   2 !   70.2   0.0     2e-23   1.8e-19     101     179 ..     134     216 ..     127     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.5e-20
                     EEEEEESESSHHHHHHHHHHHHTTSE.CEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC........SCCCCCCCHHHHHHHHCTT-SEEEEES CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsle.advvlvvsnkdkaaglekaeaasiptkvfeekk........leprsqfeeelaeelkelkadlivlag 87 
                     +ivvlisg+g+nlqal+da+++  l    + lv+sn++ a+gl++a++a++ + ++             + r  ++ e+ + ++ +++dl+vlag
      CDO72370.1  12 RIVVLISGSGTNLQALIDAQNTPALPsTRICLVLSNRKAAYGLTRAAQANPSIPTAYLGLqpylkanpGKTRDDYDLEVGRIVARENPDLVVLAG 106
                     9************************989999****************998655554444444888887888999********************* PP

                     --S---HHHHHSST CS
  Formyl_trans_N  88 ymkllpkelvqavr 101
                     +m ++++ +++ v+
      CDO72370.1 107 WMHIMGDGFLDVVN 120
                     *********98775 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 2e-23
                     TTSEEEEESSSTTTTBSS-HHHHHHHTTSSE....EEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N 101 rlkilniHpSLLPrfkGaaaiqraleaGdke....tGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalve 179
                     + +++n+Hp+L+++f+Ga+ai+ra+ea +k     +Gv++h v  e+D G+++++ +vei++ + +e  eqr++++e k++ve
      CDO72370.1 134 PIPVINLHPALPGAFDGAHAIERAYEAFQKGeikiSGVMVHRVVKEVDRGEPVLVREVEILPGEPLEAFEQRLHQVEWKLIVE 216
                     4579********************99887766667********************************************9997 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.7e-05      0.16      55      99 ..     178     223 ..     165     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
  MannoseP_isomer  55 evldegeryqvkritvkPgekls.lqkhhhraehWvvvkGtakvtv 99 
                      + +d+ge   v+ +++ Pge l   ++  h+ e  ++v+Gtakv +
       CDO72370.1 178 KEVDRGEPVLVREVEILPGEPLEaFEQRLHQVEWKLIVEGTAKVLN 223
                      568999999************96267889**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1563.35
//
Query:       CDO72371.1  [L=164]
Description: hypothetical protein BN946_scf184977.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-23   82.2   0.0    3.1e-23   81.7   0.0    1.2  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   1.7e-27   3.1e-23       1      73 [.       6      78 ..       6      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.7e-27
                EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5  1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73
                tl+e+skhn+++++wv+i++kVYDv++fl +hpGg+++ilkyaGkDat a + + h ++++ k+l    ++G+l
  CDO72371.1  6 TLDEVSKHNSQSSCWVIIKDKVYDVTEFLPDHPGGAKIILKYAGKDATSAYEPI-HPPDALDKHLPPeKHLGVL 78
                689***************************************************.****999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1070.81
//
Query:       CDO72372.1  [L=739]
Description: hypothetical protein BN946_scf184977.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.4   0.2      0.063   13.0   0.2    1.7  1  SAP       SAP domain
       0.11   12.3   1.2       0.23   11.3   1.2    1.5  1  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2     7e-06     0.063       1      29 [.      10      38 ..      10      43 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7e-06
                HTT--HHHHHHHHHHTT--TTS-HHHHHH CS
         SAP  1 lskltVaeLKeeLkkrGLptsGkKaeLie 29
                l++l+ ++L++++k +G++ + k + Li+
  CDO72372.1 10 LKNLKRSDLQKICKDYGIKANLKTEALID 38
                689***************99877666666 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   2.5e-05      0.23      13      60 ..     264     310 ..     259     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.5e-05
                 XXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC  13 kkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieer 60 
                  +++ +++   q + a++a++ +l  + ++L+aev+ L+ ++ +++++
  CDO72372.1 264 QNQIGSMQLELQRRSAQEADIHTLASQVMSLKAEVESLR-SQTAVTAQ 310
                 567777777778899***********************6.77777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5166.99
//
Query:       CDO72373.1  [L=426]
Description: hypothetical protein BN946_scf184977.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-58  198.2   0.0    8.6e-56  189.2   0.0    2.1  2  Pkinase        Protein kinase domain
    6.9e-26   91.1   0.0      9e-26   90.7   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0014   17.6   0.1      0.002   17.1   0.1    1.1  1  Haspin_kinase  Haspin like kinase domain
     0.0018   17.6   0.0     0.0028   17.0   0.0    1.2  1  Kinase-like    Kinase-like
     0.0032   16.8   0.1     0.0048   16.3   0.1    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.055   13.4   0.8       0.12   12.3   0.1    1.9  2  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.2   0.0   2.9e-59   8.6e-56       1     248 [.      18     297 ..      18     306 .. 0.86
   2 !    7.1   0.0    0.0011       3.1     247     264 .]     362     379 ..     354     379 .. 0.93

  Alignments for each domain:
  == domain 1  score: 189.2 bits;  conditional E-value: 2.9e-59
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS....CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk....hpnivrlyevfee.....kdelylvleyveggeladlle 90 
                 y+ l+ lGeG++G+V+ a++k t+++vA+Kk+   + +     ++lrE+k+lk ++     +ni+ ++++++       +e+y+++e+++++ l+++++
  CDO72373.1  18 YKILHGLGEGAYGTVVAALHKPTNREVAIKKVLPFEHTL-FCLRTLRELKLLKFFSetcvNENIISILDIVKPtsyddFKEIYFIQELMQTD-LHRVIR 114
                 677889**************************9877665.5569********9988877799********9988888899**********76.*****7 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH.TTSCBSHHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl.keneyskkvDvW 181
                   ++l++++++ +++q+l++l+ +Hs+ i+HrDlKp+N+L++ + +lK++DFGla+  +s+++       +t++v+t++Y+APE++ + ++y+k++D+W
  CDO72373.1 115 -TQQLTDDHCQYFIYQTLRALKTMHSADIVHRDLKPANLLLNANCDLKVCDFGLARSTRSTTPggkeaglMTEYVATRWYRAPEIMlSFKMYTKAIDIW 212
                 .689********************************************************9999*********************9899********** PP

                 HHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.......SHH...HHHTTS...........................-HHHHHHHHHHT- CS
     Pkinase 182 slGvilyelltgkppfsgekgkekvekeldqlekilkilg.......etkeklpeasei...........................seeakdllkkllk 246
                 ++G+il+ell+g+p+f+g++  ++          il+++g                  i                           s+ea+d+l+k l 
  CDO72373.1 213 AVGCILAELLNGRPLFPGRDYGHQLD-------LILDVIGtptleefY---------GItsrrsrdyiralpirkrrpftalfpkaSPEAIDFLQKTLL 295
                 *****************555444333.......345555422111121.........22333344446778899999999999999********99886 PP

                 SS CS
     Pkinase 247 kd 248
                 +d
  CDO72373.1 296 WD 297
                 65 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
                 SSGCCSTTHHHHHTSGGG CS
     Pkinase 247 kdpkkRltaeellqhpyl 264
                  dpkkRlt++++l+hpyl
  CDO72373.1 362 FDPKKRLTVDQALEHPYL 379
                 79**************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0     3e-29     9e-26       3     202 ..      20     224 ..      18     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 3e-29
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS....-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl....khpnivkllgvct.....keepllivteyvkgGdLlkf 91 
                  + + lGeGa+G+Vv +  k     ++ +Va+K++    +     + l+e+k++k +     ++ni+++l ++      + ++++++ e+++  dL+  
   CDO72373.1  20 ILHGLGEGAYGTVVAALHK----PTNREVAIKKVLPFEHTLFCLRTLRELKLLKFFsetcVNENIISILDIVKptsydDFKEIYFIQELMQT-DLHRV 112
                  5678************999....8999*******99998888999999999998652113579*********9765544556********86.9**** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS.-HHHHHHSE.EEH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWm.apEslkekk.fts 184
                  +r++   +lt ++   f++q  ++++ ++s ++vHrdl   N Ll+ n   k++DfGLar++ ++          ++ +  +W+ apE++ + k +t+
   CDO72373.1 113 IRTQ---QLTDDHCQYFIYQTLRALKTMHSADIVHRDLKPANLLLNANCDLKVCDFGLARSTRSTTPGgkeAGLMTEYVATRWYrAPEIMLSFKmYTK 207
                  **98...9*****************************************************966555421133345668999988***8765443999 PP

                  HHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlg 202
                  + D+W+ G +l E+++ g
   CDO72373.1 208 AIDIWAVGCILAELLN-G 224
                  99***********997.5 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   6.9e-07     0.002     112     258 ..      28     172 ..      13     178 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.9e-07
  Haspin_kinase 112 lssevyqtke..kdkevvl.Kviplevledvtiskelslkelkslklvkgty.pglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev... 200
                     ++ v  + +  +++ev++ Kv+p+    + t   +  l elk lk +  t  ++ ++ + d v+   p +y++    ++ + + + tdL +v   
     CDO72373.1  28 AYGTVVAALHkpTNREVAIkKVLPF----EHTLFCLRTLRELKLLKFFSETCvNENIISILDIVK---PTSYDD-FKEIYFIQELMQTDLHRVirt 115
                    5555555544454556555156788....455555666788888888887731233334444444...444554.455777778888999999754 PP

  Haspin_kinase 201 klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRles 258
                    +  + ++++   +q++  L+   +  +  HRdL+  n L+++n    ++d+ l+R ++
     CDO72373.1 116 QQLTDDHCQYFIYQTLRALKTMHS-ADIVHRDLKPANLLLNANCDLKVCDFGLARSTR 172
                    444457899999999999998865.5899**************************874 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.5e-07    0.0028     125     238 ..     103     216 ..      69     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.5e-07
  Kinase-like 125 eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..........kgfaPpEl 212
                  e+++  l+ +  t++   ++++  +  q +r    +++  +vh ++++ nlll+ +  l++ +f+  +      +    e          + +  pE+
   CDO72373.1 103 ELMQTDLHRVIRTQQLTDDHCQYFI-YQTLRALKTMHSADIVHRDLKPANLLLNANCDLKVCDFGLARSTRSTTP-GGKEaglmteyvatRWYRAPEI 198
                  3333334444444666678998888.99************************************86555554444.3333123333444445555555 PP

  Kinase-like 213 lgsrggytrknktkmthkldaWqlGl 238
                  + s   +++     +t ++d W++G 
   CDO72373.1 199 MLS---FKM-----YTKAIDIWAVGC 216
                  555...444.....777888888885 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.6e-06    0.0048     104     164 ..     108     165 ..      54     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwli 164
                 dL  ++++ ++l +   +  + ++ r+ + +h+a++ H+dl + n+ll+++   +++++  
  CDO72373.1 108 DLHRVIRT-QQLTDDHCQYFIYQTLRALKTMHSADIVHRDLKPANLLLNANC--DLKVCDF 165
                 77777775.66777778888888999**********************9987..4444433 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     4e-05      0.12     152     197 ..     127     169 ..      83     171 .. 0.74
   2 ?   -1.6   0.1      0.69   2.1e+03     194     229 ..     344     379 ..     343     394 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++++l+al     ++ ++H+Dl+p Nll++++ +    v Df++a+
  CDO72373.1 127 IYQTLRALKTM-HSADIVHRDLKPANLLLNANCDLK--VCDFGLAR 169
                 55555555554.67889*************554444..88998885 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.69
                 TT-EEEECCHHHHCCHHH.CSCHCCCHCHHHHHHHHC CS
         APH 194 edaglgpplyDlavllrs.wtseldpeflaallraye 229
                 +dag+g p++D a  l+  ++ + +  +++al + y+
  CDO72373.1 344 DDAGTG-PAADAALPLAQtFDPKKRLTVDQALEHPYL 379
                 789999.899999999554555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2995.01
//
Query:       CDO72374.1  [L=412]
Description: hypothetical protein BN946_scf184977.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.045   13.7   0.0        3.9    7.5   0.0    2.7  2  CusF_Ec       Copper binding periplasmic protein CusF
      0.054   13.6   0.2       0.45   10.7   0.1    2.5  3  Cupredoxin_1  Cupredoxin-like domain
      0.058   13.0   0.0        3.5    7.3   0.0    2.4  2  NADH_dh_m_C1  NADH dehydrogenase [ubiquinone] 1 subunit C1, m


Domain annotation for each model (and alignments):
>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00065       3.9      35      58 ..      44      67 ..      42      73 .. 0.82
   2 ?    3.1   0.0     0.016        96      43      59 ..     257     273 ..     253     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00065
                -TTSEESS-STT-EEEEEEEEETT CS
     CusF_Ec 35 adpallaglkaGdkVrFefekrdg 58
                a++  l++  +Gd+V+F+f++++ 
  CDO72374.1 44 AHETILKNAYVGDQVKFHFHQKNH 67
                5677899999***********975 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.016
                 -STT-EEEEEEEEETTC CS
     CusF_Ec  43 lkaGdkVrFefekrdgg 59 
                  k+ d V+Fef++++  
  CDO72374.1 257 AKPNDVVSFEFHQKNHT 273
                 599**********9754 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.35   2.1e+03      42      58 ..      55      71 ..      26      78 .. 0.72
   2 ?   -3.4   0.0       1.7     1e+04      57      77 ..     169     189 ..     151     191 .. 0.70
   3 ?   10.7   0.1   7.5e-05      0.45      16      62 ..     225     280 ..     212     290 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.35
  Cupredoxin_1 42 gekvklkiknkdktpee 58
                  g +vk+++++k  t+++
    CDO72374.1 55 GDQVKFHFHQKNHTATQ 71
                  77788888888877754 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
  Cupredoxin_1  57 eefesedlgeekvlapgkttt 77 
                   ++f+   l++ k+l+ g++++
    CDO72374.1 169 ANFKKAALEIGKELQAGASSS 189
                   566666788889998888765 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 7.5e-05
  Cupredoxin_1  16 a.....aaaektveitvkdg....gfePskievkagekvklkiknkdktpeefese 62 
                   a     +++++++++ v       +++P+++ +k +  v++++++k  t+++ +++
    CDO72374.1 225 AplsqsSQSANVIKVIVGGAngqlTYTPDHVSAKPNDVVSFEFHQKNHTATQSSFN 280
                   3454435555666666653366889**********************999776665 PP

>> NADH_dh_m_C1  NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00059       3.5      15      33 ..       9      27 ..       4      31 .. 0.90
   2 ?    2.9   0.0     0.014        86      20      38 ..     316     333 ..     309     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00059
  NADH_dh_m_C1 15 LkVgLtlGttvflWvyLik 33
                  L V L+lG ++  Wvy i+
    CDO72374.1  9 LSVALALGLSASAWVYDIQ 27
                  88**************775 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.014
  NADH_dh_m_C1  20 tlGttvflWvyLikqHned 38 
                   t+  t+ +Wvy  +qH+ d
    CDO72374.1 316 TVKDTAPIWVY-CRQHKPD 333
                   77889******.5999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2678.33
//
Query:       CDO72375.1  [L=521]
Description: hypothetical protein BN946_scf184977.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-33  113.4   0.1      7e-32  109.3   0.1    2.4  2  DKCLD        DKCLD (NUC011) domain
    4.2e-24   84.5   1.0    7.5e-24   83.7   1.0    1.4  1  TruB_C_2     tRNA pseudouridylate synthase B C-terminal domai
      2e-21   75.7   1.0    3.9e-21   74.8   1.0    1.5  1  PUA          PUA domain
    2.3e-21   76.7   0.2    9.5e-18   65.0   0.2    3.5  1  TruB_N       TruB family pseudouridylate synthase (N terminal
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.029   14.6   0.0    1.7  1  UPF0113      UPF0113 PUA domain
        4.7    7.7   7.7        7.2    7.1   7.7    1.2  1  SOBP         Sine oculis-binding protein
        9.5    6.8  14.9         19    5.8  14.9    1.4  1  APG6_N       Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> DKCLD  DKCLD (NUC011) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.1   2.7e-35     7e-32       1      58 []      34      91 ..      34      91 .. 0.99
   2 ?    1.3   0.0      0.15   3.8e+02       4      28 ..     277     301 ..     275     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 2.7e-35
                XXXXX....XXX-EEESS-----TTSS--GGG--HHHHHHTEEEEEEE-SSS-HHHHH CS
       DKCLD  1 tsewpllLknydkllvrtehytplpaGssPlkRpieeyikyGvinLDKPsnPsSHEVV 58
                ts+wpllLknydkllvr+ h+tp+paG+sPlkR+i  y+k+GvinLDKPsnPsSHEVV
  CDO72375.1 34 TSQWPLLLKNYDKLLVRSAHFTPIPAGCSPLKRDIATYVKSGVINLDKPSNPSSHEVV 91
                689******************************************************9 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
                 XX....XXX-EEESS-----TTSS- CS
       DKCLD   4 wpllLknydkllvrtehytplpaGs 28 
                 ++ lL+ y++++v+ ++ + + +G 
  CDO72375.1 277 LESLLTGYKRIVVKDSAVNAVCYGA 301
                 6789************999999986 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   1.0   2.9e-27   7.5e-24       1      63 [.     215     281 ..     215     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 2.9e-27
                 HHHHHHHHHHTTS-EEEEEEEEEEETTE.GG-..B-HHHHHHHHHHHHT..--H.HHHHEEEGGGGG CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpf.deedmvtledLedavllyke..dee.LdrlllPlesal 63 
                 RtLc ++G++Lg+g+h++eLRR+r+g++ +++dmvt++d+ da+++y++  de+ L+r+++Ples+l
  CDO72375.1 215 RTLCVHLGLLLGVGGHMQELRRVRSGALsENDDMVTMHDVLDAQWMYDNtrDESyLRRVIRPLESLL 281
                 9***************************99999****************97777***********98 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   1.0   1.5e-24   3.9e-21       1      73 [.     285     357 ..     285     358 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 1.5e-24
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHHHCTSEEEEEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdfeegdvVaivdedgelvavGlanysseelakikggksveierv 73 
                 +r+vv+d+Av+a+++ga+L++pG++++e d++ +++V++++++ge++a+++a++s+ ela++++g++++++r+
  CDO72375.1 285 KRIVVKDSAVNAVCYGAKLMIPGLLRYEADISLNEEVVLMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRC 357
                 69********************************************************************997 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   3.7e-21   9.5e-18       1     149 []      95     214 ..      95     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 3.7e-21
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCT...TS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE-------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleyll...eadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmyS 96 
                 +r+l+++k Gh+GtLDp++tG+L+v++++aT+l+++ +   +  KeY+a++rl+ +  +                  ++l ++++++tG++ q+pp +S
  CDO72375.1  95 RRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQvliSIGKEYVAVLRLHSALPNP-----------------TALPRAIQTLTGALFQRPPLIS 176
                 89*******************************97644333889*********9876544.................468899**************** PP

                 -------------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
      TruB_N  97 AvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
                 Avk                 r+ r  tiye +lle++e+   + + v+c++GtYi
  CDO72375.1 177 AVK-----------------RQLRVRTIYESKLLEFDEKrnLAVFWVSCEAGTYI 214
                 ***.................999*************98887899**********8 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.1e-05     0.029       2      56 ..     287     342 ..     286     362 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
     UPF0113   2 vvvkekaeklFLYGrdvlkesilkitesvkenqvvvVlnengeplGiGkirkdt.k 56 
                 +vvk +a + + YG +++  ++l+++ ++  n+ vv++ ++ge++++++++ +t +
  CDO72375.1 287 IVVKDSAVNAVCYGAKLMIPGLLRYEADISLNEEVVLMTTKGEAIALAIAQMSTvE 342
                 79************************************************998763 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.7    0.0028       7.2      59     172 ..     387     499 ..     372     517 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0028
        SOBP  59 ksaGseaqLitPdlwlsncr.srsaspaskrsesvspeps....ksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpgl 152
                  + G++ + +tP  w ++      ++pa++++  v p+p+    +s+s+++s   +++ k + +v+ +   ++   ++  +  ea       r ++++l
  CDO72375.1 387 GKYGEKIEGVTPAEWSRDYVdYNRDQPATTEAAPVAPQPEpsatESSSKDKSEKAEKKRKRKSEVPDADGDVSMAAEADGEEDEAA------RAERKRL 479
                 446777899******99985256788999999888888775454444444444444445555555555444443333333332222......3333333 PP

        SOBP 153 rkpkqvkagsskssetkagl 172
                 +k+k+++ + +k+ e + ++
  CDO72375.1 480 KKEKKAAEKAAKGGEEEDEE 499
                 33333333333333333222 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  14.9    0.0074        19      34      95 ..     444     515 ..     428     519 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0074
      APG6_N  34 klkkekkeeek................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeeleale 95 
                 k k+      k                + ee+e+++ e ++l+ke++++++  k  e+e+ee ++e++ l++e++a+e
  CDO72375.1 444 KRKR------KsevpdadgdvsmaaeaDGEEDEAARAERKRLKKEKKAAEKAAKGGEEEDEEARRERKRLKKEKKARE 515
                 3333......03345567888888888788999*****************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1692  (0.0943722); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.43s 00:00:01.36 Elapsed: 00:00:00.60
# Mc/sec: 2595.83
//
Query:       CDO72376.1  [L=123]
Description: hypothetical protein BN946_scf184977.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-48  161.4   0.8    9.6e-48  161.1   0.8    1.0  1  Ribosomal_L22e   Ribosomal L22e protein family
  ------ inclusion threshold ------
      0.014   14.2   0.1      0.015   14.1   0.1    1.0  1  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> Ribosomal_L22e  Ribosomal L22e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.8   1.1e-51   9.6e-48       3     109 .]      12     119 ..      10     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 1.1e-51
  Ribosomal_L22e   3 klkftidcskpvedkildvaefekfLkerikvngktgnlgdkveiere.gkskvtvtsevkfskrylkyltkkyLkkkqlrdwlrvvasskesYe 96 
                     k+kf+id+s+p++d+++dva+fekfL++rikvngktg+lg++v+i+r+ g+sk+tvts+v+fskrylkyltkk+Lkk+ lrdw+rvvas k+ Y+
      CDO72376.1  12 KHKFVIDYSRPASDGVFDVAAFEKFLHDRIKVNGKTGQLGENVKIHRDvGDSKITVTSNVPFSKRYLKYLTKKFLKKNALRDWIRVVASAKDVYQ 106
                     79********************************************984577******************************************* PP

  Ribosomal_L22e  97 Lryfnieedeeee 109
                     Lr++ni+  +eee
      CDO72376.1 107 LRFYNIQAADEEE 119
                     *******999886 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.6e-06     0.015     173     262 ..      30     120 ..      10     123 .] 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-06
                      HHHHHHHHTSH.HHHHH-TTEEEEEEEEEEEETTEEEEEEEEEEEGGG--SHHHHHHHHHHHHHHHHHHHHHHSTTSEEE.EEE-TT-BGGG CS
  AdoMet_Synthase 173 vleterllnsk.elkkklpevGeDiKvmglRekkkielTvavalvdrlvkdleeYlevkeeikeeveelakkltkereve.vevNtaDkkee 262
                      v + e++l+++ ++  k+ ++Ge +K+     ++ki++T  v++ +r++k l++ + +k+++++ ++ +a+ +   ++++  ++ +aD++ee
       CDO72376.1  30 VAAFEKFLHDRiKVNGKTGQLGENVKIHRDVGDSKITVTSNVPFSKRYLKYLTKKFLKKNALRDWIRVVASAKDV-YQLRfYNIQAADEEEE 120
                      6778888886535678899*********9999**********************************999886555.4444145777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.48
# Mc/sec: 776.08
//
Query:       CDO72377.1  [L=1403]
Description: hypothetical protein BN946_scf184977.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-17   61.9   0.0    1.5e-16   60.6   0.0    1.7  1  HA2          Helicase associated domain (HA2)
    2.8e-14   53.4   0.1      6e-14   52.3   0.1    1.5  1  Helicase_C   Helicase conserved C-terminal domain
    2.6e-08   34.1   0.0    6.2e-08   32.9   0.0    1.6  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    4.7e-06   26.9   0.0    1.3e-05   25.5   0.0    1.7  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.098   13.2   0.0       0.33   11.5   0.0    1.9  2  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   4.2e-20   1.5e-16       1      98 [.    1117    1226 ..    1117    1232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 4.2e-20
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.........e.....eekak 83  
                  A+  Lv++ AL++++++T++Gr +++lP +++l+k+Ll+a+   ++cld+++ti+A l+ +++fl +   e+e e++         +     ++ a+
  CDO72377.1 1117 AVSALVEVRALTPNEEITPMGRLLSQLPTDVHLGKFLLIATL--FRCLDPALTIAATLNSKSPFLTPLGLEQEAERAklsfrvensDfltihNAFAS 1211
                  7889************************************55..5***********************99988887766665554414445566666 PP

         HA2   84 kkrkeeekarrklah 98  
                  ++r++++  +rk+++
  CDO72377.1 1212 WRRASANGIARKFCK 1226
                  777776666666665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   1.7e-17     6e-14      17     110 ..     931    1049 ..     912    1050 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.7e-17
                  SEEEEEESSHHHHHH.HHHHHHHT......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH......... CS
  Helicase_C   17 gkilifvntidrlek.vklllekk......gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv......... 97  
                  + il+f++   ++ +  ++l+ ++       +++ +lh++++++++ ++++    g ++++iat++ae+Gi+ip++++Vi+ +  r++         
  CDO72377.1  931 SAILVFMPGMGEIRRlNDILTDHRsfgaedRFRIYPLHSTISSEQQGAVFDIPPPGVRKIVIATNIAETGITIPDITCVIDTGKHREMrfdekrqis 1027
                  6788999988866444344422223455558******************************************************999999999*** PP

                  .........HHHHHHHTTSSST CS
  Helicase_C   98 .........tsyiqriGRtgRa 110 
                           +++ qr+GR+gR+
  CDO72377.1 1028 rlvetfiarSNAAQRRGRAGRV 1049
                  *********************7 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.7e-11   6.2e-08       2      72 ..    1295    1366 ..    1294    1369 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.7e-11
                   HHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTT.T...TSSSEEEEEEEEESSSEEEEEEEEE- CS
  OB_NTP_bind    2 raillaGlypqiarkdpskkdyktartktrvfihpsSvlak.nekekepewvvytelvettklylrdltaid 72  
                    a+l+aGlyp+i   d  + +++t ++++++++hpsSv+++ + +++  + ++y +++ ++kly+ ++ +++
   CDO72377.1 1295 NAALAAGLYPKILAVDAARGELRTITNNQQASFHPSSVNFRkRLNDFGVNHLCYFTIMHSKKLYAWETGPVE 1366
                   689**********99999999***99***************99999******************97776665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.6e-09   1.3e-05       6     135 ..     649     806 ..     646     807 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.6e-09
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka........................erlsseelle 80 
                 +ilv+ Ge+G+GK+t +  +  +++  +     rp  +++t p   s  +l++++ r+lg+++ a                        +         
  CDO72377.1 649 QILVLSGETGCGKSTQVPAFILEDQLLK----GRPCKIYCTEPRRISAISLAQRVSRELGEPAGAvgtgnslvgyairlesninrrtrlA--------- 734
                 79********************985332....37777788888888*********************99999999999986665333322......... PP

      AAA_22  81 aleqalrarav...............ielliiDEaqhlr..seealeeLrsllnlsrkgvqliLvGtp.elrk 135
                 ++++ +  r+                i  +iiDE++  +  s+ +l  L+sll  +r +++++L+  + e++k
  CDO72377.1 735 YVTNGIALRMLeggsgqggqgtafdeITHIIIDEVHERTieSDFLLIVLKSLLA-QRPDLKVVLMSATlEAEK 806
                 3333333333344446777799***************54467999999988888.799999999877767665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         5   1.8e+04      83      96 ..      72      85 ..      42     112 .. 0.48
   2 ?   11.5   0.0   9.3e-05      0.33       8      36 ..     645     673 ..     640     693 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5
                TCHHHHHHHSTTGG CS
                xxxxxxxxxxxxxx RF
    ABC_tran 83 eeiekalsklglke 96
                + ++++++k+++k 
  CDO72377.1 72 QSLQNLIDKFQDKV 85
                22222222222222 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.3e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllk 36 
                 l+ ++++++ Ge+G+GKSt + +++ + +
  CDO72377.1 645 LEMSQILVLSGETGCGKSTQVPAFILEDQ 673
                 57799**************9888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 8329.51
//
Query:       CDO72378.1  [L=1551]
Description: hypothetical protein BN946_scf184977.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-67  225.1   1.1    1.8e-66  224.3   1.1    1.4  1  SNF2_N           SNF2 family N-terminal domain
    3.2e-48  163.5  17.8    3.2e-48  163.5  17.8    2.6  3  DBINO            DNA-binding domain
    3.7e-16   59.4   0.0      1e-15   58.0   0.0    1.9  2  Helicase_C       Helicase conserved C-terminal domain
      2e-06   27.9   0.0    4.9e-06   26.7   0.0    1.6  1  ResIII           Type III restriction enzyme, res subunit
    3.4e-05   23.2   0.0     0.0009   18.5   0.0    2.6  2  HDA2-3           Class II histone deacetylase complex subunit
  ------ inclusion threshold ------
       0.31   11.4  13.3        2.4    8.6  13.3    2.7  1  HSA              HSA
       0.37   11.0   1.5       0.71   10.1   0.2    2.2  2  DNA_pol_B_thumb  DNA polymerase beta thumb


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.3   1.1   7.1e-70   1.8e-66      49     349 ..     705     996 ..     692     997 .. 0.89

  Alignments for each domain:
  == domain 1  score: 224.3 bits;  conditional E-value: 7.1e-70
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH....--------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk....mkkkntkva 143
                 a+++++  +GiLaDemGLGKTvq+++l++   +  e +        + gp+L+v+Pas+l++W++ei r+v++ +   + ++ + +    +  ++++++
  CDO72378.1 705 ATLYEQGINGILADEMGLGKTVQSISLLA---YLAETHD-------IWGPFLVVSPASTLHNWQQEITRFVPKLKALPYWGNPKDRatlrKFWSKKEIS 793
                 5678999**********************...5444444.......569**************************999988888776666333345677 PP

                 --------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 144 pklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfd 242
                  ++ a ++v+it+Y+ + +++      + +++v+w++++lDE++++kns s   ++++ ++ +nr++ltGTPiqns+++l++Ll+f++++ f++++ f+
  CDO72378.1 794 YDQDAPFHVLITSYQLIIQDQ------QYFQRVKWQYMILDEAQNIKNSSSARWKTLLGFQCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFN 886
                 77888889**********999......89********************************************************************** PP

                 HHTHHHHH........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-H CS
                 xxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 243 kllqrpie........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskeki 333
                 ++++++ie        + +e++ +rL+ +l+++mlrr+k+ v+ +l +k+e+ i+++ls+ +r +Y+     l++  ++ ll+++    +++s     +
  CDO72378.1 887 EWFSKDIEnaaenkgsKLNEHQLRRLHMILKPFMLRRVKRHVQNELSEKIEKDIYVELSARQRALYK---ALLANVSVQDLLEKAANMGDADS--ARSL 980
                 ***************999*************************************************...55555566666666544444444..3569 PP

                 HHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxx RF
      SNF2_N 334 lelllelrqacnhpql 349
                 ++l+++ r+++nhp+l
  CDO72378.1 981 MNLVMQFRKVVNHPEL 996
                 9*************98 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5  17.8   1.3e-51   3.2e-48       2     133 ..     433     564 ..     432     565 .. 0.99
   2 ?   -1.4   1.3       1.1   2.7e+03      27     109 ..     610     645 ..     597     650 .. 0.49
   3 ?   -2.8   0.1         3   7.6e+03      14      69 ..     937     992 ..     918     999 .. 0.62

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1.3e-51
       DBINO   2 eekrkkvwknivkkdipkvyrakaqaekkrlanakkvaklcarevrrkasksskatkdlqlrakrlvremllfwkknekeereerkkaekealekakke 100
                 ee+++kvw++i+++d+ kvy+++a+ +++r +++ ++a+l++ ++rr   k++katkd+q++akrl+reml+fwkknekeer++r++++kea+++a+ e
  CDO72378.1 433 EEAQRKVWMTIARRDVVKVYKFHAAGYQTRRQQLSRLATLASIQARRPFLKTAKATKDTQAKAKRLMREMLVFWKKNEKEERDVRRREKKEAIDRARIE 531
                 7899*********************************************************************************************** PP

       DBINO 101 eeereakRqqrkLnFLitQTELYshFiskklkt 133
                 ee+rea Rq+rkL+FLi+QTELYshF+++klkt
  CDO72378.1 532 EEKREAARQARKLEFLISQTELYSHFVGNKLKT 564
                 *******************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
       DBINO  27 aekkrlanakkvaklcarevrrkasksskatkdlqlrakrlvremllfwkknekeereerkkaekealekakkeeeereakRq 109
                 ++++  a akk a+   +                                               +a+ ++k++e ++ akRq
  CDO72378.1 610 NAQAAIALAKKRAQEFDT-----------------------------------------------QAALERKTNEALKLAKRQ 645
                 444444444444443333...............................................444445555555555555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3
       DBINO  14 kkdipkvyrakaqaekkrlanakkvaklcarevrrkasksskatkdlqlrakrlvr 69 
                  kdi     a+++a  k l  +  v +l ++ + +  ++s+++  +l+++ +++v 
  CDO72378.1 937 EKDIYVELSARQRALYKALLANVSVQDLLEKAANMGDADSARSLMNLVMQFRKVVN 992
                 44555555555555555555555666777777777777777777777777777765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         7   1.8e+04      11      59 ..     431     472 ..     424     479 .. 0.56
   2 !   58.0   0.0   4.1e-19     1e-15       2     111 .]    1278    1390 ..    1277    1390 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 7
                 HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeil 59 
                 +lee ++k+ + + ++d +   k+     ++++a ++ + +q +r+++l
  CDO72378.1 431 TLEEAQRKVWMTIARRDVV---KVY----KFHAAGYQTRRQQLSRLATL 472
                 4566777777777777755...444....34555555555555555555 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 4.1e-19
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlp 94  
                  kl++l +ll +l++ ++++li+ + +++++   ++l   +++k+++l+g+ + ++r++++ +++ + ++  ++++t++++ Gi+++ +++Vi++d +
  CDO72378.1 1278 KLARLDALLqELKAGDHRCLIYFQMTRMMDLmEEYL-IYRQYKYLRLDGSSKLEDRRDMVMEWQtRPDIFiFILSTRAGGLGINLTAADTVIFYDHD 1373
                  6788888888889**************998755555.5668**************99999999864444449************************* PP

                  SSHHHHHHHHTTSSSTT CS
  Helicase_C   95 rnvtsyiqriGRtgRag 111 
                  +n+++  q+++R++R g
  CDO72378.1 1374 WNPSNDAQAMDRAHRLG 1390
                  ***************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.9e-09   4.9e-06       4     170 ..     693     860 ..     681     861 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.9e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG...............GEEEES CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke...........igkkvs 90 
                 l+eyQ + ++ l ++l  ++  +g+++ + G GKT+ +++l ++l++ +++   fl++ p    l  +++e+++f ++ ++              k++s
  CDO72378.1 693 LKEYQLKGLNWL-ATLY-EQGINGILADEMGLGKTVQSISLLAYLAETHDIWgPFLVVSPAS-TLHNWQQEITRFVPKLKALpywgnpkdratLRKFWS 788
                 556666666544.4444.7888*************************999885666666655.56789********99865588888888777555555 PP

                 SS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS-S CS
      ResIII  91 gdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATpe 170
                 +++ +    ++   ++l+t++q + +d+       + ++r + +++i DEa +++ ++   w+  l  f+   +l lT+Tp 
  CDO72378.1 789 KKEISY--DQDAPFHVLITSYQLIIQDQ-------QYFQRVKWQYMILDEAQNIKNSSsaRWKT-LLGFQCRNRLLLTGTPI 860
                 555544..55566899999999999999.......899999*************9974448888.556699999999***95 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.059   1.5e+02      10      67 ..     942     996 ..     938     998 .. 0.72
   2 !   18.5   0.0   3.5e-07    0.0009      82     241 ..    1268    1408 ..    1260    1433 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.059
                 E---HHHHHHHHHHHHHTH.HHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGG CS
      HDA2-3  10 tpltelqkelteqivslhy.edllkyvetsdsqeklslsikslticlenlslvanHPsL 67 
                 + l+ +q++l++ ++   + +dll+        ++     +++++++ + + v nHP L
  CDO72378.1 942 VELSARQRALYKALLANVSvQDLLEKAANMGDADSA---RSLMNLVM-QFRKVVNHPEL 996
                 578899999999998765427777766333333333...67888888.99*******98 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.5e-07
                  HHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEE CS
      HDA2-3   82 lpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltih 178 
                  ++++l++ SgK++ l  l++ +   +       l+  +  + +dL E +l+ ++ k+ r++g + +++ +++              ++ +   + ++
  CDO72378.1 1268 EAKRLIYDSGKLARLDALLQELKAGD----HRCLIYFQMTRMMDLMEEYLIYRQYKYLRLDGSSKLEDRRDMV-------------MEWQTRPDIFI 1347
                  46799*********************....8889999999999***************************999.............34455556666 PP

                  EEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---.-------EEEEEETTSHHH CS
      HDA2-3  179 llsttrqltkdksllenikfdliiafDssvdtsspsveslrtqn.rkknklpiirlvpinSieH 241 
                  ++ +tr         + + +d +i  D + ++s++   + r ++  + +++ ++rl++  +i+ 
  CDO72378.1 1348 FILSTRAGGL---GINLTAADTVIFYDHDWNPSNDAQAMDRAHRlGQTRQVTVYRLITKGTIDE 1408
                  6666666533...355566688888888888888877777766523444588888888887775 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  13.3   0.00092       2.4      29      69 ..     485     527 ..     460     545 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00092
                 HHHHH..HHHHHHHHHHHHHHH--XXXXXXXXXXXXXXXXXXX CS
         HSA  29 erksk..rakakklaravakyhnniekeeqkriereekerlka 69 
                 ++  k  +akak+l r ++ ++++ ekee  + +re ke + +
  CDO72378.1 485 AKATKdtQAKAKRLMREMLVFWKKNEKEERDVRRREKKEAIDR 527
                 4444455***************************999998755 PP

>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00028      0.71      11      59 ..     889     944 ..     886     955 .. 0.68
   2 ?   -3.1   0.1       3.6   9.1e+03       9      24 ..    1109    1124 ..    1108    1125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
                      HHHHHHHHHHCTTEEEETTEEE.................ETCCCEEEC-SSHHHHHHHC CS
  DNA_pol_B_thumb  11 FnrdlRrlakkkglkLnssglrd..........ekgkaeddddgelvevetErdvfelL 59 
                      F +d+ + a++kg kLn++ lr+          +   + +++ ++ +  + E+d++  L
       CDO72378.1 889 FSKDIENAAENKGSKLNEHQLRRlhmilkpfmlR---RVKRHVQNELSEKIEKDIYVEL 944
                      899*******************866665544431...2333344444445577776555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.6
                       HHHHHHHHHHHHCTTE CS
  DNA_pol_B_thumb    9 ktFnrdlRrlakkkgl 24  
                        tF r+lR +  ++ +
       CDO72378.1 1109 PTFARHLRARQLEERW 1124
                       69******99888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 9924.80
//
Query:       CDO72379.1  [L=496]
Description: hypothetical protein BN946_scf184977.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.5e-119  397.2   0.0   7.2e-119  396.8   0.0    1.1  1  Lyase_1      Lyase
    7.8e-20   71.0   0.1    1.8e-19   69.9   0.1    1.7  1  FumaraseC_C  Fumarase C C-terminus
  ------ inclusion threshold ------
      0.052   13.4   0.0       0.12   12.3   0.0    1.5  1  ADH_N        Alcohol dehydrogenase GroES-like domain
      0.082   12.8   0.2        8.1    6.4   0.0    2.5  2  P22_Cro      DNA-binding transcriptional regulator Cro
       0.16   11.1   0.0       0.26   10.4   0.0    1.2  1  G-alpha      G-protein alpha subunit


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.8   0.0    2e-122  7.2e-119       1     312 []      42     373 ..      42     373 .. 0.99

  Alignments for each domain:
  == domain 1  score: 396.8 bits;  conditional E-value: 2e-122
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.......HHHHHHHHHHHTTSST...HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.......alaalkkaaakanvdl...keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlne 89 
                 g+++v+a++++g++t+rs++nf +++  ++       a+++lkkaa ++nv +    ++ +ai++a+dev++ gkl+ +f+l+v+q+gsgt++nmn+ne
  CDO72379.1  42 GELQVPAERYWGAQTQRSLQNFDIGGPAERlpeplikAFGVLKKAASIVNVTYgldPKIGQAIQQAADEVIS-GKLMSEFPLVVFQTGSGTQSNMNVNE 139
                 7899**********************9999******************************************.************************** PP

                 HHH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHH CS
     Lyase_1  90 vig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaea 178
                 vi+    e+lg      ++v+pnd+v+++qSsnD++pTa+++a++++++  Llpal++L+dal +k +ef++++kiGrThlqdAtP+tlgqe+s+y+++
  CDO72379.1 140 VISnraiEILGgergskKPVHPNDHVNMSQSSNDTFPTAMHVAAVTEIHRSLLPALTELRDALAAKQREFDHIIKIGRTHLQDATPLTLGQEFSGYVQQ 238
                 ****9999999*****99********************************************************************************* PP

                 HHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TS CS
     Lyase_1 179 lerdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.ag 275
                 + + + r+k++l   l +l++ggtavgtgln+++ f+ +va+e++k+tg++  +apn+fea++++Da+ve++gal+++a+sL+k+a+D+r+l sg+ +g
  CDO72379.1 239 VSNGIDRVKDVL-PRLSLLAQGGTAVGTGLNTKKGFDVKVAAEISKLTGIEfKTAPNKFEALAAHDALVEAHGALNTVACSLMKIANDIRYLGSGPrCG 336
                 ************.7788899999**************************************************************************** PP

                 SEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 276 lvelslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                 l+el+l+e+epGSSiMPgKvNP+q+E++t+v+++v+G
  CDO72379.1 337 LGELQLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMG 373
                 ************************************9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   5.1e-23   1.8e-19       1      54 []     439     492 ..     439     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 5.1e-23
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH. CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMtg 54 
                  L+T Ln h+GY++ ak Ak+A+keg+tl+ea+++lg+lt ee+d+ ++pe M++
   CDO72379.1 439 LATILNSHLGYDNVAKCAKKAHKEGITLKEATVALGFLTPEEFDAKVRPELMLH 492
                  79**************************************************86 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05      0.12      18      54 ..     211     247 ..     207     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
                 HHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS-- CS
       ADH_N  18 lhilkggkelevklplilGHEivGeveevgpevkklk 54 
                   i  g+++l+ ++pl+lG E++G v++v ++++++k
  CDO72379.1 211 HIIKIGRTHLQDATPLTLGQEFSGYVQQVSNGIDRVK 247
                 455556689999******************9998875 PP

>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.015        54      34      52 ..      29      47 ..      25      55 .. 0.82
   2 ?    6.4   0.0    0.0022       8.1       4      24 ..      75      95 ..      73     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.015
                -HHHHHHHHHHTTTSS--H CS
     P22_Cro 34 PelrayqierlTaGkLkvq 52
                 +++ y+ier T G L+v 
  CDO72379.1 29 TMQQKYRIERDTFGELQVP 47
                57889***********986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0022
                HHHHHHSSHHHHHHHHTS-HH CS
     P22_Cro  4 dvikhFGgvekvAkalgvtks 24
                 +ik FG  +k+A+ ++vt++
  CDO72379.1 75 PLIKAFGVLKKAASIVNVTYG 95
                689***************975 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.2e-05      0.26      56     103 ..     389     434 ..     379     468 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.2e-05
                 HHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS- CS
     G-alpha  56 latwraviqlnivrsiktilealesleselsesfelqelkerldplkk 103
                 l+ +++vi++n+++si+++ +a +s+++++   +  +++++r++ l++
  CDO72379.1 389 LNVFKPVIIKNVLQSIRLLADASRSFTKNC--VVGIKANEKRINTLLH 434
                 4569*********************99988..4566777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3210.32
//
Query:       CDO72380.1  [L=246]
Description: hypothetical protein BN946_scf184977.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-50  171.7   1.4    1.7e-50  171.5   1.4    1.0  1  PEX11     Peroxisomal biogenesis factor 11 (PEX11)
  ------ inclusion threshold ------
       0.03   14.1   0.1        5.7    6.8   0.0    2.5  2  DUF4190   Domain of unknown function (DUF4190)


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   1.4   1.9e-54   1.7e-50       3     223 .]      16     239 ..      14     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 1.9e-54
       PEX11   3 klvkflaqtqgrDKllRalqYasrllayllerkgsskelvkklkklesqfslsRKllRlgkflehlqaaaklldnkledpvlrllavlrnlgyalYlll 101
                 + +++l++t grDKl R +qY++r+ a+ll ++g++  +++++ +l+s+++l+RKllRlgkf+e+ qa+ ++l +++ +   r++ ++r+lgy +Yl+l
  CDO72380.1  16 QSLRVLNTTIGRDKLYRGVQYFARFFAWLLLSRGYKI-QAARWDALKSHLGLGRKLLRLGKFMENAQAILRTL-STPGETGERVAMIGRHLGYFGYLFL 112
                 6789*****************************8765.5689****************************875.77778999***************** PP

       PEX11 102 Dhvlwlkklgllkvknak..klsrlssrfwlfglvlslvrdlyelrllqekekklkkek...kekeereeeklaavlkkrpallldlvknllDllialn 195
                 D++ w++++++++ ++++  k+ ++ ++fw+ g+v+s++  l +  +l +  kkl+++    k++e++ + kl+ ++  r a++ + + +llD+ i+ +
  CDO72380.1 113 DNISWAHSIKFYNLQPSTaqKINKRVMQFWFTGIVFSIAHGLLKAGRLANDVKKLQNQTwaeKSAEAERDLKLRDLQLAREAVRYQFIIDLLDVWIPAT 211
                 *************9999999*********************************9998888776666666777*************************** PP

       PEX11 196 elgilklsdgvvGlaGliSSllgllqlw 223
                 ++g+++l+dgv Gl+Gli+Sl+ l+q+w
  CDO72380.1 212 NIGLVNLNDGVLGLFGLITSLMALRQQW 239
                 ***************************9 PP

>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0   0.00063       5.7      37      58 ..      90     111 ..      82     113 .. 0.84
   2 ?    4.5   0.0    0.0032        28      17      33 ..     221     237 ..     211     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00063
     DUF4190  37 sgerGkglAiaGivlGwiglll 58 
                  ge+G+ +A++G  lG++g l+
  CDO72380.1  90 PGETGERVAMIGRHLGYFGYLF 111
                 469***************9876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0032
     DUF4190  17 iitgivavilGhvAlrq 33 
                 +++g++++i+  +Alrq
  CDO72380.1 221 GVLGLFGLITSLMALRQ 237
                 58999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1904.70
//
Query:       CDO72381.1  [L=342]
Description: hypothetical protein BN946_scf184977.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-26   91.5   0.0    1.2e-25   90.0   0.0    1.7  2  LIAS_N       N-terminal domain of lipoyl synthase of Radical_
    3.4e-08   34.1   0.1    6.9e-08   33.0   0.1    1.5  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.3e-29   1.2e-25      16     108 .]      19     102 ..       6     102 .. 0.89
   2 ?   -2.7   0.0      0.87   7.8e+03      81      97 ..     230     246 ..     202     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.3e-29
      LIAS_N  16 saltkaastsssltdekkelleeGPdlqDFvsgdkedkseweeykgnlkrekgerlrLPswlktkiPlGknynkikndlreLnLhtvCeeaRC 108
                 ++ +++ +t ss++  + ++l++GP+l+DF+++ ++d+     + gn +++     rLPs+lkt+iP G++++kik+dlr+LnLhtvCeeaRC
  CDO72381.1  19 RTHARCLATPSSSKGSFSQTLADGPSLDDFIADRVPDR----VVLGNKNAP-----RLPSYLKTTIPKGASFAKIKKDLRGLNLHTVCEEARC 102
                 33378899999999***********************9....788888888.....9************************************ PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.87
      LIAS_N  81 iPlGknynkikndlreL 97 
                 + +G+n +++ + lreL
  CDO72381.1 230 LGVGENEEQVMHALREL 246
                 34677778888888877 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   7.7e-12   6.9e-08      45     166 ..     122     245 ..     112     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 7.7e-12
                  TT.SEEEEEESSTGGGS...TTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHH CS
                  xx.xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Radical_SAM  45 kg.vkevilgggeplly...pdfvellerlaklavpgiritvetngtlpdeeklerllelgvdrvslgleaaddekvlklmn.rghtfeevlealekl 137
                  +g + +++l+g++ l++   ++f+e + +++++  p i +   t  +  + e+++  ++ g+d++++++e++        ++ r+  f + l++le +
   CDO72381.1 122 RGaTATIMLMGDTYLADggaYHFAETIMKIKQK-APQILVEALTGDFAGNLEHVAVVAKSGLDVYAHNIETVEA--LTPFVRdRRAKFRQSLQVLEHA 216
                  454778888888888884445555555555555.5999999999999999**********************99..566666699************* PP

                  HHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 138 reagikrvvdrivglpGendeeleellel 166
                  +++g+k++++ ++++ Gen+e++ + l++
   CDO72381.1 217 KKSGVKVTKTSMMLGVGENEEQVMHALRE 245
                  *********************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2398.61
//
Query:       CDO72382.1  [L=178]
Description: Glycosyltransferase Family 8 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-08   32.7   0.0    7.2e-08   32.3   0.0    1.2  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0     4e-12   7.2e-08     140     253 ..      24     131 ..       6     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4e-12
  Glyco_transf_8 140 fkkylnksepliaenfkpeacy.FnaGvllfdldewrkenitetlikwlnlnekrtllklgdqdilnivfkgkvkeldkkynvlglgyeqskksk 233
                      +++++++ p + ++++p++ +  n+Gv+++++ + + e+i ++l +    +   + + ++dqd+l  +fkg++k+l+ +yn l +++    +  
      CDO72382.1  24 AAETNEDKAPPALTESSPRPYAlLNSGVVVLHPSREAFEDIYRFLASP---QV--KEYCFPDQDLLAEYFKGRWKPLPWYYNGLKTLR--AIHPG 111
                     566777888888888888776527*********998888887777776...33..3678*****************************..66666 PP

  Glyco_transf_8 234 keitenaaviHyiGpaKPWl 253
                         ++++ +Hyi + KPW 
      CDO72382.1 112 LWSDDEVRCVHYILKDKPWT 131
                     66669**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1260.58
//
Query:       CDO72383.1  [L=366]
Description: hypothetical protein BN946_scf184977.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-83  278.0   0.0    1.1e-82  277.8   0.0    1.0  1  Peptidase_M22   Glycoprotease family
  ------ inclusion threshold ------
      0.066   13.3   0.3       0.21   11.7   0.0    1.9  2  HTH_13          HTH DNA binding domain
      0.076   12.7   0.0          2    8.0   0.0    2.1  2  Carbam_trans_N  Carbamoyltransferase N-terminus


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.8   0.0   1.9e-86   1.1e-82       2     270 ..      45     331 ..      44     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 277.8 bits;  conditional E-value: 1.9e-86
                    CEXEEEEEEEEE....S.SSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHC CS
  Peptidase_M22   2 vlanvvasqkelhakyG.GvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahala 96 
                    vl+nv ++++   +++G G++P++++++H+e+ l +i+ al +ag sl d+d+I++tkgPG++ +L  ++ +A++l+l +nkPlvgVnh+ +h+++
     CDO72383.1  45 VLSNVRHTYI---TPPGeGFLPRDTAQHHREWALTIINDALRKAGESLHDVDCICFTKGPGMGAPLVSVALVARTLSLLYNKPLVGVNHCVGHIEM 137
                    7888888886...99999****************************************************************************** PP

                    CHCT.SECSSCEEEEESSSTEEEEEECTTEEEEEEEESSSEHHHHHHHHHHHHT..SSCCH..HHHHHHCTC.S.......EETTEEE.CHHHHHH CS
  Peptidase_M22  97 arle.ekeefPvvllvsGghtqvylvkegryeilgetlddaagealdkvarllglpypggp..kieklakeg.kkiefprplkgldfsfsGlktav 188
                    +r e ++ ++Pvvl+vsGg+tqv++++++ y+i+getld+a+g++ld++ar+++l+++++p  +ie+ ak+g + + +p++ kg+d+s+sG+ t++
     CDO72383.1 138 GR-EiTGAQNPVVLYVSGGNTQVIAYSQQCYRIFGETLDIAVGNCLDRFARVINLSNDPSPgyNIEQEAKKGkRLLPLPYTTKGMDISLSGILTST 232
                    **.55988******************99*****************************877777*********55599******************* PP

                    HHHHSTT.................HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCH CS
  Peptidase_M22 189 lkeleke.................vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaa 267
                       ++++                  +dl++s+qe+v+++lve+tera+++ +++e++i+GGv++n+rL+e++  +a+e+g k+++++++yc dn++
     CDO72383.1 233 EAYTTDKrfrpngpsaedgddiitPQDLCFSLQEHVFAMLVEITERAMAHIGSREVLIVGGVGCNERLQEMMGVMASERGGKVFATDERYCIDNGI 328
                    **99442356889************************************************************99999****************** PP

                    HHH CS
  Peptidase_M22 268 mia 270
                    mia
     CDO72383.1 329 MIA 331
                    **8 PP

>> HTH_13  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05      0.21      10      44 ..     104     143 ..     103     146 .. 0.83
   2 ?   -2.1   0.1      0.71   4.3e+03      28      42 ..     278     288 ..     270     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
      HTH_13  10 srPlVsagmvakeLkvtpr....aalklvkelgl.RElTG 44 
                   PlVs+++va++L +       ++++ v  +++ RE+TG
  CDO72383.1 104 GAPLVSVALVARTLSLLYNkplvGVNHCVGHIEMgREITG 143
                 57************986433344999*************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.71
      HTH_13  28 raalklvkelglREl 42 
                 ra    ++ +g+RE+
  CDO72383.1 278 RA----MAHIGSREV 288
                 43....677888886 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.016        98      45      72 ..      75     102 ..      63     121 .. 0.81
   2 ?    8.0   0.0   0.00033         2     266     305 ..     258     297 ..     221     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.016
  Carbam_trans_N  45 lkaidyaleeagvelsdiDqivfdeidg 72 
                     l  i+ al +ag +l+d+D+i f + +g
      CDO72383.1  75 LTIINDALRKAGESLHDVDCICFTKGPG 102
                     467999*****************98766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00033
  Carbam_trans_N 266 edlaAsiqvflErlvvevlnivyeklkirnLclaGGvalN 305
                     +dl  s+q+ +  ++ve ++ ++++ ++r   + GGv+ N
      CDO72383.1 258 QDLCFSLQEHVFAMLVEITERAMAHIGSREVLIVGGVGCN 297
                     49999*********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2584.82
//
Query:       CDO72384.1  [L=209]
Description: hypothetical protein BN946_scf184977.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-11   44.6   0.0    2.9e-11   43.8   0.0    1.4  1  AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
    0.00088   18.6   0.0     0.0012   18.2   0.0    1.2  1  AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   3.2e-15   2.9e-11       1      49 [.       7      53 ..       7      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 3.2e-15
                 EE---SSTT----SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHH CS
  AlaDh_PNT_N  1 gvpkEikagErRvaltPatvkkLvkaGhevlVesgaGegagfsdeeYee 49
                 +++ E+k+ ErR a+tP+t+kkL++aG++++Ve++   +++f+deeYe 
   CDO72384.1  7 WLRCEKKQFERRTAITPTTAKKLIDAGFSIFVERDS--QRIFKDEEYEM 53
                 5789********************************..*********95 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-07    0.0012      88     200 ..      72     195 ..      38     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-07
                  HHHH-SEEEE---BTTSS---SC-HHHHHTS-TT..EEEEETTGGGT........-SBTT-..-TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHH CS
  AlaDh_PNT_C  88 avkeadvvigtvlipGkkaPkLvteemvksMkpg..sVivDvAidqG........Gnvets..rltthgepvveekgvvhygvanlpgavprtasall 173
                   + ++d+ i ++ +     P L +e++ ++ k+    V+vDv++d+          n++t+  ++t + e    +    ++    lp+ +pr+as+ +
   CDO72384.1  72 DILDVDIFINCIYLSSPIPPFLTKEQIAAAGKDRrlRVVVDVSCDTTnphnplpiYNINTTfsKPTVPVEVGEGNPPLSVVSIDHLPTLLPREASEQF 169
                  67789999999998877777776666666555443369*******6545555555677755457777777777777899******************* PP

                  HHHHHHHHHHHCHHHTCCHHHCTSHHH CS
  AlaDh_PNT_C 174 tnntlpyleelladkglkkalkedeal 200
                  ++++lp l+el  +++ +++  e e l
   CDO72384.1 170 SEALLPSLLEL-PNRKTARVWVEAENL 195
                  ***********.666666777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1395.46
//
Query:       CDO72385.1  [L=424]
Description: hypothetical protein BN946_scf184977.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2945.42
//
Query:       CDO72386.1  [L=490]
Description: hypothetical protein BN946_scf184977.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3456.23
//
Query:       CDO72387.1  [L=420]
Description: hypothetical protein BN946_scf184977.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-21   76.3   0.0    2.6e-21   75.7   0.0    1.3  1  Acyltransferase  Acyltransferase
    3.7e-08   33.3   0.0    6.4e-06   26.2   0.0    2.4  2  Acyltransf_C     Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   2.9e-25   2.6e-21       9     134 ..     124     277 ..     113     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 2.9e-25
  Acyltransferase   9 nlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR...ksnaraagslenise..lleeg..kl. 94 
                      nlp  ++a+l+aNHq y+D+ + w+l y ++++++v+i++kk+l+++p+lg++m+ ++fif+ R   +++    +sl+ +++      +  +l 
       CDO72387.1 124 NLP--QKAVLIANHQVYADWWYAWALTYFMGTHKDVFIVLKKSLKWVPVLGWGMQFFNFIFLARswaSDRIHLSKSLSWLARraEK--EdsPLt 213
                      555..59************************77*******************************5544444444555555553333..355889 PP

  Acyltransferase  95 vviFPEGtrsre...................gellpfkkGlvrlaakak.....kgvpivPvai 134
                       +++PEGt  ++                     llp ++Gl +++++++      ++ ++++a+
       CDO72387.1 214 FILYPEGTLISKdtrpiskkyadklgipdmtHTLLPRSTGLHYSLRSLApripnLQLLDITMAY 277
                      ********999999**************996666*************99888777777777776 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0043        38       5      23 ..     299     319 ..     295     326 .. 0.83
   2 !   26.2   0.0   7.2e-10   6.4e-06      21      55 ..     343     382 ..     337     398 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0043
  Acyltransf_C   5 G.kpsevhiyvrriple.evP 23 
                   G  p  vh+++r+++++ +vP
    CDO72387.1 299 GiSPPAVHMHIRKFDVNrDVP 319
                   556779*********997888 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 7.2e-10
  Acyltransf_C  21 evPed.eeelaeWlhelfeeKDklleeFyktgtFe....p 55 
                   ++Pe   e+ + Wl+ l++eKDkl+  F++tg+ +    p
    CDO72387.1 343 DIPEAeREAFELWLRSLWREKDKLIGRFLETGSLDapteP 382
                   69***55999**********************99765442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2944.63
//
Query:       CDO72388.1  [L=462]
Description: hypothetical protein BN946_scf184977.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-32  111.7  37.7    4.1e-32  111.4  37.7    1.0  1  Aa_trans         Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
      0.071   12.5   1.3      0.089   12.1   0.1    1.7  2  Enoyl_reductase  Trans-2-enoyl-CoA reductase catalytic region
          5    7.7   7.8         17    5.9   1.5    3.2  3  GTA_holin_3TM    Holin of 3TMs, for gene-transfer release
        5.3    6.9   8.2       0.21   11.4   0.6    2.8  2  CoxIIa           Cytochrome c oxidase subunit IIa family


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4  37.7   9.1e-36   4.1e-32      10     406 ..      63     442 ..      57     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 9.1e-36
    Aa_trans  10 lnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsyliligdl 108
                 +++i +iv+ G+L+LP A++  G++++lil+++ +++ lyt+ lL++ +    +++     gd gy ++Gp g+ i ++  +++ ++++ s  il g+l
  CDO72388.1  63 AFMIAEIVSNGMLTLPNAMAVVGIVPSLILTIFLGVFALYTAKLLIDFKL---NHPDVHNMGDAGYIMFGPIGREILSAGTIIFAIFAVGS-EILSGQL 157
                 67899********************************************8...589******************************95555.5666666 PP

    Aa_trans 109 lpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaigiivFAftg 207
                   ++++++     l+ v+f +i++++i++Lsl + l  L +l ll++v++++  + + ++v  +    +  v+  tv   +++ + flai+  vF+++g
  CDO72388.1 158 ALSMLSNN----GLCAVVFLAIFSAAIFLLSLPRTLGGLDWLGLLSAVFITI--CGFLAMVGAGANPVPGRVVVATV--PTTFYEAFLAITGPVFSYAG 248
                 66666653....79************************************96..45555554444444444444444..356669************** PP

    Aa_trans 208 havlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvvenllikke 306
                 h +++ ++ e+++p++    +k+  +   ++t++y+++ +v+Y+  G++v + +ll+lp+ +    i  +l +++ ++s  l++h++ + +   ++++ 
  CDO72388.1 249 HFMFFILISEMRKPED-A--MKAAWVLQGFSTAFYAVFSVVVYVYIGSTVASPALLSLPPVW--SKITFALGMVNFLISGALYAHAAAKLIFIRFFRR- 341
                 ****************.4..5788888889*****************************885..6666666778999*******************98. PP

    Aa_trans 307 avagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlk...liktekksleklvkkkildlicivlglllvfy 402
                   +   + ++ + +++++++ ++ + ++ + A  vp ++ + +++ +++++  ++ + ++f+l     +k  + +l++ +  ++l++ ++  g++++++
  CDO72388.1 342 --SRHIYSHTSLGWTVWVLLCFASTGVAFVFATAVPIFSYLAGITASLFASWYTYGIAGFFWLHdtyHLKGGFDGLKRKWIGTLLATSTVLAGAFICIA 438
                 ..999999*****************************************************99621133445677788888888888999999999999 PP

    Aa_trans 403 glav 406
                 g++v
  CDO72388.1 439 GTYV 442
                 8887 PP

>> Enoyl_reductase  Trans-2-enoyl-CoA reductase catalytic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.68   3.1e+03     138     151 ..     284     297 ..     279     299 .. 0.81
   2 ?   12.1   0.1     2e-05     0.089     109     161 ..     403     458 ..     401     460 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.68
                      EEEEEEE---GGGH CS
  Enoyl_reductase 138 ktvaysYiGpelta 151
                      + v y YiG+++++
       CDO72388.1 284 SVVVYVYIGSTVAS 297
                      5789*****99876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2e-05
                      HHHHHHHSSHHH..HHHHHHH.HHTT-EEEEEEEEEEEE---GGGHHHHTSSHHHH CS
  Enoyl_reductase 109 eetvkvmGGeDW..elWieaL.keadvlaegaktvaysYiGpeltapiYregtiGk 161
                      ++t +  GG D   ++Wi +L ++  vla  +  +a +Y+  +l a+ Yr+g +Gk
       CDO72388.1 403 HDTYHLKGGFDGlkRKWIGTLlATSTVLAGAFICIAGTYVSAKLIADAYRQGLVGK 458
                      5788888888853378**87526789****************************97 PP

>> GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.032   1.4e+02      94     120 ..      78     104 ..      38     105 .. 0.73
   2 ?    2.0   0.1     0.064   2.8e+02      98     117 ..     223     242 ..     201     249 .. 0.66
   3 ?    5.9   1.5    0.0039        17      72     119 ..     242     291 ..     235     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.032
  GTA_holin_3TM  94 aaialglalvPepLwwllggvvgfyfv 120
                    + ++++++ vP  ++++++gv ++y++
     CDO72388.1  78 PNAMAVVGIVPSLILTIFLGVFALYTA 104
                    344555589***************976 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.064
  GTA_holin_3TM  98 lglalvPepLwwllggvvgf 117
                    +++a+vP ++++++++++g 
     CDO72388.1 223 VVVATVPTTFYEAFLAITGP 242
                    334689***********995 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0039
  GTA_holin_3TM  72 Pllgyvtlalllwai..vldPllaaaialglalvPepLwwllggvvgfyf 119
                    P++ y++  ++++ i  + +P+ a  +a +l+++  ++++++++vv +y 
     CDO72388.1 242 PVFSYAGHFMFFILIseMRKPEDAMKAAWVLQGFSTAFYAVFSVVVYVYI 291
                    89999887777776666**************************9998886 PP

>> CoxIIa  Cytochrome c oxidase subunit IIa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   4.7e-05      0.21       7      29 ..      80     102 ..      79     105 .. 0.93
   2 ?   -4.3   1.8       3.9   1.7e+04      15      26 ..     277     288 ..     269     291 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHH CS
      CoxIIa   7 aLavivvLtatILvFWfgvFyvF 29 
                 a+av+++    IL+  +gvF+++
  CDO72388.1  80 AMAVVGIVPSLILTIFLGVFALY 102
                 8********************98 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHH CS
      CoxIIa  15 tatILvFWfgvF 26 
                 ta+  vF  +v+
  CDO72388.1 277 TAFYAVFSVVVY 288
                 666677766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3139.67
//
Query:       CDO72389.1  [L=379]
Description: hypothetical protein BN946_scf184977.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-05   23.1   3.8        2.4    8.7   0.5    4.9  5  LRR_4     Leucine Rich repeats (2 copies)
     0.0048   16.6   2.5      0.072   12.9   0.0    3.4  4  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.26   2.3e+03      16      32 ..     100     116 ..      96     119 .. 0.68
   2 !    8.7   0.5   0.00027       2.4       1      33 [.     171     203 ..     171     208 .. 0.77
   3 !    5.4   0.1     0.003        27       2      36 ..     195     233 ..     194     241 .. 0.70
   4 !    8.4   0.1   0.00032       2.9      18      39 ..     268     286 ..     258     306 .. 0.78
   5 ?   -0.5   0.0      0.21   1.8e+03      17      35 ..     323     341 ..     315     348 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.26
                 -S-HHH-TT--EEE-.- CS
       LRR_4  16 iplleklpnLkeLdLsg 32 
                 +  + +l+ L++++L g
  CDO72389.1 100 LRTILGLKGLRSVTLGG 116
                 44433599999999954 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00027
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgN 33 
                 pn ++L Lsn  lt ip         L++L L +N
  CDO72389.1 171 PNIRTLRLSNVALTVIPAmmAH-PSRLTHLIL-NN 203
                 799******99*****997433.455999988.44 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.003
                 S--EEE--SS---.E-S-HH.....H-TT--EEE-..-S--- CS
       LRR_4   2 nLevLdLsnNqlt.diplle.....klpnLkeLdL.sgNnli 36 
                 +L++L L+n  +  ++++l      +  +L++L++  gN  i
  CDO72389.1 195 RLTHLILNN--VDlEVGFLPdlchgSWESLRVLTViGGN-GI 233
                 79******9..6655677443556458889999973445.54 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.00032
                 -..HHH-TT--EEE-.-S-----G CS
       LRR_4  18 l..leklpnLkeLdLsgNnlitdl 39 
                    ++ +pnL+ L+Lsg+    d+
  CDO72389.1 268 DdmPS-CPNLRNLHLSGF----DV 286
                 44456.9********998....55 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.21
                 S-HHH-TT--EEE-...-S-- CS
       LRR_4  17 plleklpnLkeLdL..sgNnl 35 
                 ++ + lp+L+ L +  sg nl
  CDO72389.1 323 SSSA-LPHLRRL-VapSGTNL 341
                 4445.99**999.54776644 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.34   3.1e+03      43      58 ..     101     116 ..      98     118 .. 0.71
   2 !   12.9   0.0     8e-06     0.072      19      58 ..     165     203 ..     161     206 .. 0.88
   3 ?    1.9   0.1     0.022     2e+02      47      58 ..     272     283 ..     262     307 .. 0.76
   4 ?   -3.8   0.0       1.3   1.2e+04      47      54 ..     326     333 ..     323     334 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.34
                 GGGTT--S-.EEE--S CS
       LRR_8  43 gafsgLpsLrsLdLsg 58 
                 +++ gL+ Lrs +L g
  CDO72389.1 101 RTILGLKGLRSVTLGG 116
                 5667888888877766 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8e-06
                 TSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--S CS
       LRR_8  19 eaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsg 58 
                  + ++++n ++L Lsn  lt++ p ++++ ++L++L L++
  CDO72389.1 165 AMAFRFPNIRTLRLSNVALTVI-PAMMAHPSRLTHLILNN 203
                 555669****************.9*************987 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.022
                 T--S-.EEE--S CS
       LRR_8  47 gLpsLrsLdLsg 58 
                 ++p+Lr L+Lsg
  CDO72389.1 272 SCPNLRNLHLSG 283
                 556666666665 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 1.3
                 T--S-.EE CS
       LRR_8  47 gLpsLrsL 54 
                  Lp+Lr L
  CDO72389.1 326 ALPHLRRL 333
                 45555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2423.77
//
Query:       CDO72390.1  [L=1064]
Description: hypothetical protein BN946_scf184977.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-09   35.0   0.2    1.1e-05   24.8   0.0    2.7  3  Hydrolase_4    Serine aminopeptidase, S33
    1.6e-06   27.9   0.0    4.4e-06   26.5   0.0    1.7  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.032   12.9   0.0      0.056   12.1   0.0    1.2  1  Ndr            Ndr family


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.35   2.1e+03     107     187 ..     352     434 ..     346     438 .. 0.71
   2 !   24.8   0.0   1.9e-09   1.1e-05      30     117 ..     571     656 ..     552     717 .. 0.78
   3 !    7.0   0.0   0.00052       3.1     195     236 ..    1003    1044 ..     994    1046 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.35
  Hydrolase_4 107 saPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadpl..v.hgkitvrlllelldamkrleera 187
                  s+Pa ++++k + ++ ++ ++  ++++++   ++++ +++  + +pe vaa++a +     + + +v++l+e +  + ++e+ra
   CDO72390.1 352 SSPA-EPREKRPQTSPQRTVAPSISEIIRAHAPPEQQQTHGKCPEPEAVAAVKAAEDegDlISRSSVDTLAEEIHHTIQAEKRA 434
                  5666.5666634777888889999999999999999999999999999986655443113366777777777777777777766 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 1.9e-09
  Hydrolase_4  30 qGfavyalDhrGhGrse.....gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva.glilsaPalkikakl 117
                   G+  +++D  G Gr+e      +rg +p++ ++v+ +  ++          ++ +++hS G+  a++++ ryp++++  + l aP+++  +  
   CDO72390.1 571 MGIRLITIDRWGLGRTEvpknkSARG-IPEWASLVEEVLDHL---N----IDQCSVMAHSAGAPYAMAFANRYPERIRgEVCLLAPWVAGGEGG 656
                  4999*************988766666.888888887775554...3....55799***********************8899******998764 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00052
  Hydrolase_4  195 lllhGeaDkvvdpeasrelyerlgskdktlklypglyHelln 236 
                    + +G++D+ + ++a r + +++g +++++k+++g+ H+l++
   CDO72390.1 1003 RIWYGDRDEKIAENAVRWMENAMGPDKCQVKVIKGADHSLMF 1044
                   5899***********************************986 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   7.4e-10   4.4e-06      29     109 ..     572     649 ..     548     680 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 7.4e-10
                    TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSS CS
  Abhydrolase_1  29 gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidp 109
                    g ++i++D  G g+++ ++++  +  g+   a  ++ +ld+l++d+  +++hS G   a+a+a +yper+++ v+l a ++
     CDO72390.1 572 GIRLITIDRWGLGRTEVPKNK--SARGIPEWASLVEEVLDHLNIDQCSVMAHSAGAPYAMAFANRYPERIRGEVCLLA-PW 649
                    789*****************9..88999999****************************************9888777.34 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.3e-06     0.056      72     128 ..     587     643 ..     582     659 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-06
                 ---TT-----HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEE CS
         Ndr  72 slpedyqfpslddladqllavldhfklksviglGvgaGAyilarfalkhperveglv 128
                 ++p+++    + + a  +++vldh+++++   +   aGA   + fa ++per+ g v
  CDO72390.1 587 EVPKNKSARGIPEWASLVEEVLDHLNIDQCSVMAHSAGAPYAMAFANRYPERIRGEV 643
                 67888888888999999************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 6932.31
//
Query:       CDO72391.1  [L=936]
Description: hypothetical protein BN946_scf184977.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.8e-103  345.9   1.1   4.9e-103  345.5   1.1    1.2  1  Erythro_esteras  Erythromycin esterase
     0.0038   17.1   0.4     0.0038   17.1   0.4    3.0  2  TMEM154          TMEM154 protein family
  ------ inclusion threshold ------
      0.039   14.0   0.4      0.039   14.0   0.4    1.9  2  PRIMA1           Proline-rich membrane anchor 1
       0.97    9.4   2.6          2    8.4   2.6    1.5  1  DUF3377          Domain of unknown function (DUF3377)


Domain annotation for each model (and alignments):
>> Erythro_esteras  Erythromycin esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.5   1.1  1.1e-106  4.9e-103       1     343 [.      64     455 ..      64     456 .. 0.91

  Alignments for each domain:
  == domain 1  score: 345.5 bits;  conditional E-value: 1.1e-106
                      HHHC---EEEEEEEHHHHHHHHHHHHHS-.......S-GGGT...........S-CCC-CHHHHHHHHHHHHHHHSTT-SS-.....-EEEEEE CS
  Erythro_esteras   1 veehGfrtvalEadwpdalrvdryvrggt.......gdaeea........krfptwmWrneevlelveWlReyNagrpkker.....vrfyGlD 74 
                      +ee+Gf+++a+Eadwpda r++ry++gg+       +             +rfp+wmW+ne + +++e+l+++N++  ++ +     v+fyG+D
       CDO72391.1  64 IEEKGFTAIAVEADWPDAFRINRYIHGGQladgtkiK----NardalaefERFPKWMWKNEVMPPFIEYLKQHNERTMEDTKdgsktVSFYGMD 153
                      89***************************86643332....26677999*************************8666666699********** PP

                      -S---HHHHHHHHHHHHCHCCCCHHHHHHHCCHGGCS.........TSSCCCCCHHHHHHHHHHHHCCHGGG...........GG.TSHHHHHH CS
  Erythro_esteras  75 lqslresldavldyLakvdpelagaareryaclapla.dp..raarsaeaaelrscedevvallkellakreeyaa......edg.eaeeffsa 158
                      l+sl++s+++v++yL++vdpe a+aar+ry+c+++++ d+  + a + +   ++ c++ev+++lk ll +r++  +       +g  +ee+f a
       CDO72391.1 154 LYSLHRSAQQVIEYLERVDPEGAKAARKRYNCFERFGeDTmrY-AYETQFGLKKDCHREVIENLKNLLLNRQKILEkemgknVNGhPREEQFVA 246
                      ************************************6577853.4445688***************8888887766667665444889****** PP

                      HHHHHHHHHHHHHC.....CSSSSSCHHHHHHHHHHHHHHHHHHHH.........HHSSEEEEEEHHHHSSS-STTTT-S...S-HHHHHHHHH CS
  Erythro_esteras 159 eqnarlvknaeryyra...gdeeswnlrllalRDrhMaenleallehe.......argkivvwAHNsHigdaratdmgkerg.lnaGqllrerl 241
                      e+na +vk+ae+yyr+   +d  swnl     RD h+a  +  ++++        +r+k+vvwAHNsH+gdaratdmg++rg +n+Gq +re +
       CDO72391.1 247 EMNALVVKDAEEYYRTmmtEDVLSWNL-----RDDHFARAVASIAQFLgpsekgpGRAKVVVWAHNSHVGDARATDMGRRRGeINVGQRCREIF 335
                      *******************999*****.....**************999999***99*********************99999*********** PP

                      GGG.EEEEEEEEEEEEEEEC-.......EEEE----TTSHHHHHHCSS-SEEEEEG-................CHHHHHHEE............ CS
  Erythro_esteras 242 gde.yvaiGftfgtgtvaaasewgepmevmtvrppppgslEallhaagppdflldlr...............neelrewleeprleraiGv..r 317
                      gd+ +++iGf +++gtv+a ++w+ep+  + ++pp +gslEa++++ +  d+++ ++               ++el + l++pr++r+iGv  r
       CDO72391.1 336 GDDkVFNIGFLTNRGTVTASHNWDEPPFLQWMNPPIEGSLEAIFDKWADMDTFIVTHkivtdekgrtkkfkvSHELSDFLDRPRYQRFIGViyR 429
                      **********************************************999899988833555566778899999********************* PP

                      EEE---SB-BTTSHHHH-SEEEEEEE CS
  Erythro_esteras 318 peterqshyveaslaeqfDalifvde 343
                      + te  shy+++s a+qfD + +++e
       CDO72391.1 430 RLTEVPSHYSKCSAAKQFDCIAHIRE 455
                      ************************98 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.7  16.0         4   1.8e+04      16      46 ..     670     694 ..     635     768 .. 0.71
   2 !   17.1   0.4   8.5e-07    0.0038       5      86 ..     774     858 ..     766     872 .. 0.77

  Alignments for each domain:
  == domain 1  score: -11.7 bits;  conditional E-value: 4
     TMEM154  16 tleeesadatsaasteseslkqeeakeslss 46 
                  ++++s+ ++++++t +     ++  +s+s 
  CDO72391.1 670 SANPTSTSPSTTQVT-Q-----TTVAQSTSA 694
                 222222333333333.2.....222222222 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 8.5e-07
     TMEM154   5 eksgdtaletatleeesa...datsaasteseslkqeeakeslssaelsnesdqlelvlmiiiPlvllillllvviiliqkkkrk 86 
                 + s+++al+ ++ ++++a   +++s+  t  ++ ++ ++ +s + + +s +  ++ +++++++ + ll+l+ll+ ++++++ ++ 
  CDO72391.1 774 SGSATSALSATGQPQPTAgnpPSASPIHTSPPPTATGTSPASNNGPATSSTGVSKTVIIIVAVLASLLVLMLLAAVLVMMIRNQA 858
                 568899******9999983333445555555556688888999999999999999999999998888888888877777776664 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   8.7e-06     0.039      25      83 ..     792     851 ..     770     874 .. 0.55
   2 ?   -7.2   3.6         4   1.8e+04      28      33 ..     922     927 ..     919     931 .. 0.44

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.7e-06
      PRIMA1  25 rypplpppppppppprllsltaaestvsple..pwwselviiiavvcaslvfllvlviicy 83 
                  +pp  +p    ppp    ++ a+++ + +      + ++ii+av  + lv++l++  +  
  CDO72391.1 792 GNPPSASPIHTSPPPTATGTSPASNNGPATSstGVSKTVIIIVAVLASLLVLMLLA-AVLV 851
                 36777777766677766544433333333332145555677777766555555443.3333 PP

  == domain 2  score: -7.2 bits;  conditional E-value: 4
      PRIMA1  28 plpppp 33 
                 p+pppp
  CDO72391.1 922 PIPPPP 927
                 223322 PP

>> DUF3377  Domain of unknown function (DUF3377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.6   0.00045         2      24      60 ..     824     861 ..     819     863 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00045
     DUF3377  24 sgtvnaiaVvvPlvLllciLvliyailq.frrkgtprr 60 
                 +g+ + ++++v ++ +l++L+l++a+l  + r  + rr
  CDO72391.1 824 TGVSKTVIIIVAVLASLLVLMLLAAVLVmMIRNQAARR 861
                 566889999999999*******9999885656666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1136  (0.063361); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 5816.95
//
Query:       CDO72392.1  [L=196]
Description: hypothetical protein BN946_scf184977.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   12.4   0.0      0.053   12.2   0.0    1.0  1  Cas_Csd1  CRISPR-associated protein (Cas_Csd1)


Domain annotation for each model (and alignments):
>> Cas_Csd1  CRISPR-associated protein (Cas_Csd1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-06     0.053     285     403 ..      67     186 ..      21     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-06
    Cas_Csd1 285 rlkklleairggkk......ldldettrfyvlgLapnagRlsvrfyreltlgeflknlkrwfedlaivkkkkeevgapslkrllkaladdksklknvpp 377
                  +++l++++r  k+      ++++  ++f ++ L  n gR+  ++     + e+   l+ ++   a+++ +++ ++ap +k++lk+++  k++++    
  CDO72392.1  67 YVNALIHSPRCSKAsrdrirESPEFGNEFAMISLLSNVGRINTTM---AFFPEMKTALRTYHPVPALQRTNGNLQDAPRIKNILKSCY-LKGEAQ-GAV 160
                 4555555555555455555434445799*************9887...5699999****************9*99*************.776665.344 PP

    Cas_Csd1 378 nlagrllrailegtpyPedllaaavr 403
                 +   ++l  i +g+  P ++++ ++ 
  CDO72392.1 161 SKPADMLARIRSGKVPPTSIVNVIFI 186
                 55678889999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1298.03
//
Query:       CDO72393.1  [L=943]
Description: hypothetical protein BN946_scf184977.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.3   0.1     0.0055   16.7   0.1    1.9  1  MIT       MIT (microtubule interacting and transport) domain
     0.0039   16.6   1.3     0.0068   15.8   1.3    1.3  1  DUF3543   Domain of unknown function (DUF3543)


Domain annotation for each model (and alignments):
>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   6.2e-07    0.0055       1      53 [.     189     248 ..     189     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.2e-07
         MIT   1 ldkAlelvkkAveeDnagnye.eAlelYkealelLlqalke......kneerrellreki 53 
                 l +Alel+++Av++D+ ++ +  A+ +Y  ++ lL++++ +      ++++rr+  r+ +
  CDO72393.1 189 LTRALELAREAVKLDSTNDDPyGAVMAYARSVALLSEVMERvmrgedSTDRRRNGRRRSV 248
                 679*************9987659***************9944655333337777777655 PP

>> DUF3543  Domain of unknown function (DUF3543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.3   7.6e-07    0.0068     175     247 ..     191     272 ..     189     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.6e-07
     DUF3543 175 rAlemSraAAvnEltgedlkgCelaYetaiwmLealldedeeeenkkee.........eldeeDrkviekliksiknRLkal 247
                 rAle++r+A +   t++d  g+ +aY+ ++ +L  +++     e+++++         + +ee+ +  + + +  ++R++ l
  CDO72393.1 191 RALELAREAVKLDSTNDDPYGAVMAYARSVALLSEVMERVMRGEDSTDRrrngrrrsvVAQEEEVRRLKSIHDTYAERMNIL 272
                 9************************************654443333333344566777777777777788888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6639.99
//
Query:       CDO72394.1  [L=367]
Description: hypothetical protein BN946_scf184977.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.2e-110  366.7   0.0   1.2e-109  365.9   0.0    1.3  1  Septin        Septin
    1.8e-06   28.0   0.0    4.2e-06   26.8   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
    0.00063   19.8   3.5      0.077   13.0   0.0    3.0  3  Dynamin_N     Dynamin family
     0.0069   15.9   0.1        0.3   10.6   0.0    2.7  3  GTP_EFTU      Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.018   14.4   0.0    1.4  1  AIG1          AIG1 family
      0.032   13.6   0.1      0.097   12.0   0.1    1.8  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.054   13.4   3.8       0.13   12.1   0.5    2.9  3  RsgA_GTPase   RsgA GTPase
       0.11   11.6   0.0       0.25   10.4   0.0    1.5  1  IIGP          Interferon-inducible GTPase (IIGP)


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.9   0.0  5.5e-113  1.2e-109       1     275 [.      14     290 ..      14     296 .. 0.97

  Alignments for each domain:
  == domain 1  score: 365.9 bits;  conditional E-value: 5.5e-113
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylr 98 
                 kg++ft+mvvG+sg+G+tt++ntl+e+++ +++  ++++  ++++ ++ik  +v++eedgv++ lt++DtpgfGd++dn+ +++ iv y++ q++++l+
  CDO72394.1  14 KGVQFTVMVVGASGTGRTTFVNTLCESEVLPHKVCDNPETaHIEEGIRIKPVNVELEEDGVRIALTIVDTPGFGDNIDNEFAFQEIVGYLERQYDDILS 112
                 79*********************************99988799******************************************************** PP

                 HCTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHH CS
      Septin  99 eesklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelse 196
                 ees++kR  ++ D+RvHa+lyfi Ptgh l+++d+elm++ls +vn+iPvi+KaD+lt +El+ fKk+i+e++++++i++y++p   e++dee+ + + 
  CDO72394.1 113 EESRIKRnPRFRDNRVHALLYFIPPTGHALREMDIELMRRLSPRVNVIPVIGKADSLTPSELRGFKKRIMEDIDHYDIPVYNFPYDVEEDDEETIQDNS 211
                 *******999************************************************************************888888888999***** PP

                 HHHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XX CS
      Septin 197 klkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklskl 275
                 +l++ +Pf+i+gs+e+ie +g+ vr+R ypWG+ ev+n++h+dF  Lr +ll+thl dLk  t+++lYetyR+ekls++
  CDO72394.1 212 ELRAMMPFSIIGSEEEIEIDGQPVRARIYPWGIAEVDNPSHCDFSRLRGALLNTHLADLKALTHDVLYETYRTEKLSRT 290
                 ****************************************************************************976 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.9e-09   4.2e-06       2      96 ..      20     148 ..      19     165 .. 0.58

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.9e-09
                 EEEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE.......ETTEE.....EEEEECGGC.......................SSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk.......lkgke.....ielvDtpGl.......................iegase 62 
                 v++vG + +G +t++n+l+++     +v d p t    + +r+k       +   +     +++vDtpG+                       i ++++
  CDO72394.1  20 VMVVGASGTGRTTFVNTLCESevlPHKVCDNPETAHIEEGIRIKpvnveleE---DgvriaLTIVDTPGFgdnidnefafqeivgylerqyddILSEES 115
                 89******************95434588888876655566666654444332...0444449*******766666666666555543333222111111 PP

                 HHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1  63 ekglgkaflaleeadlillvvdaseeklkpldee 96 
                 + + + +f+  ++++++l+ +  + + l+++d e
  CDO72394.1 116 RIKRNPRFR-DNRVHALLYFIPPTGHALREMDIE 148
                 222222222.344666666665443345555555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.4e-05     0.077       1      34 [.      20      55 ..      20      58 .. 0.86
   2 !    5.8   0.0    0.0057        13     103     119 ..      78      94 ..      71     112 .. 0.75
   3 ?   -0.8   0.5      0.61   1.4e+03      53      81 ..     310     340 ..     277     358 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                EEEEEBTTTTHHHHHHHHHTS--S-..--SSS---S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp..rgpnptTrr 34
                ++vvG+   G ++++n L+++++lp  +  np T+ 
  CDO72394.1 20 VMVVGASGTGRTTFVNTLCESEVLPhkVCDNPETAH 55
                79***********************55556788875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0057
                 EEEEE---B-SSSGTTS CS
   Dynamin_N 103 ltlvDlPGldsvnkrdq 119
                 lt+vD+PG+ ++ +++ 
  CDO72394.1  78 LTIVDTPGFGDNIDNEF 94 
                 8********99777665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.61
                 SSEEEE..T-EB--CHHHHHHHHHHHHHHHT CS
   Dynamin_N  53 eelkek..ekkledfsevreeieketekiag 81 
                 ++lke+  ++++e++ e++  +++e +++ +
  CDO72394.1 310 VRLKEEqlRREEEKLREIELRVQREINEKRQ 340
                 3333333444444444444444444444333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00013       0.3       6      82 ..      20      88 ..      17      95 .. 0.78
   2 ?    1.7   0.0     0.069   1.6e+02     121     153 ..     155     188 ..     145     231 .. 0.70
   3 ?   -1.7   0.0      0.78   1.8e+03      72      85 ..     244     257 ..     199     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSH.HHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGG CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlk.eErergiTiksaaisleketkkylinliDtPGHvd 82
                ++++g   +G tT++ +L ++    +k         v+D+ + +  e gi ik  +++le+++ +  ++++DtPG  d
  CDO72394.1 20 VMVVGASGTGRTTFVNTLCESEVLPHK---------VCDNPEtAHIEEGIRIKPVNVELEEDGVRIALTIVDTPGFGD 88
                778888888999999988855444333.........45654415789*************9999***********766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.069
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrk 153
                  +v++i +i K+D l  +el+  ++ + +++++ 
  CDO72394.1 155 PRVNVIPVIGKADSLtPSELRGFKKRIMEDIDHY 188
                 5799**********98788888888888877555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.78
                 EEEEEESSSGGGHH CS
    GTP_EFTU  72 inliDtPGHvdFsk 85 
                 i+ +D P H dFs+
  CDO72394.1 244 IAEVDNPSHCDFSR 257
                 677999*****986 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.1e-06     0.018       2      74 ..      19     100 ..      18     111 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.1e-06
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EE........EEEEETT..EEEEEEE--SCCCTTCCHHCHHHHHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqk........ksrtwdg..kkinViDTPglfdlsvsadkiskeiv 74 
                 t+++vG +g+G+ + +N++ ++++   k+++++ t + ++        ++ ++dg    + ++DTPg  d   +++++ +eiv
  CDO72394.1  19 TVMVVGASGTGRTTFVNTLCESEVLPHKVCDNPETAHIEEgirikpvnVELEEDGvrIALTIVDTPGFGDN-IDNEFAFQEIV 100
                 799****************999997666666665555554111111005556666545678******8775.45666777776 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.3e-05     0.097      42      65 ..      20      43 ..      11      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
                  EEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLilSlat 65
                  ++v+Ga+g+G +t++ntL  S ++
    CDO72394.1 20 VMVVGASGTGRTTFVNTLCESEVL 43
                  89****************877665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5     6e-05      0.13     101     125 ..      19      43 ..      10      90 .. 0.64
   2 ?   -0.5   0.0      0.44   9.9e+02      44      80 ..     154     193 ..     141     217 .. 0.69
   3 ?   -3.0   0.1       2.7     6e+03      65      90 ..     317     342 ..     310     360 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6e-05
                  EEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelel 125
                  t+++vG SG G++t++n+l +++ l
   CDO72394.1  19 TVMVVGASGTGRTTFVNTLCESEVL 43 
                  67889**************998433 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.44
                  HTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEE CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeee...eleelkeelealgyevl 80 
                  + +++++ v+ K+D l+ +e     ++++e++ +++++v+
   CDO72394.1 154 SPRVNVIPVIGKADSLTPSElrgFKKRIMEDIDHYDIPVY 193
                  56788899999***99999966544555556666666655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.7
                  HHHHHHHHHHTTSEEEE--TTTHTTH CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegl 90 
                  l++ +e+l++++++v    ++++++l
   CDO72394.1 317 LRREEEKLREIELRVQREINEKRQEL 342
                  56666666666666554333333333 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00011      0.25      35      55 ..      17      37 ..      11      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                -EEEEEEESTTSSHHHHHHHH CS
        IIGP 35 klkiavtGdsGnGkssFinaL 55
                +  ++v+G sG+G+ +F+n+L
  CDO72394.1 17 QFTVMVVGASGTGRTTFVNTL 37
                6789****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2641.84
//
Query:       CDO72395.1  [L=941]
Description: hypothetical protein BN946_scf184977.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-68  230.4   0.0      3e-68  229.6   0.0    1.4  1  MutS_V    MutS domain V
    3.1e-38  131.9   4.8      6e-38  131.0   4.8    1.5  1  MutS_III  MutS domain III
    1.1e-23   83.6   0.0    4.3e-23   81.7   0.0    2.1  2  MutS_I    MutS domain I
    5.9e-10   39.6   0.4    1.3e-09   38.5   0.0    1.8  2  MutS_II   MutS domain II
    3.8e-05   23.4   0.0    0.00012   21.7   0.0    1.8  1  AAA_27    AAA domain
    0.00063   20.3   0.1     0.0082   16.7   0.0    2.2  2  AAA_23    AAA domain
     0.0075   16.0   0.0      0.016   14.9   0.0    1.5  1  AAA_29    P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.058   13.4   0.0       0.19   11.8   0.0    1.9  1  AAA_14    AAA domain
        0.1   12.2   0.0       0.18   11.4   0.0    1.3  1  SASRP1    Spermatogenesis-associated serine-rich protein 1
       0.13   12.1   0.0       0.26   11.1   0.0    1.5  1  DUF3126   Protein of unknown function (DUF3126)


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.6   0.0   1.7e-71     3e-68       2     186 ..     719     914 ..     718     916 .. 0.90

  Alignments for each domain:
  == domain 1  score: 229.6 bits;  conditional E-value: 1.7e-71
                 EEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHHH CS
      MutS_V   2 litGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaial 100
                 +itGpnmaGkst+lrq+ali++laq+Gsfvpa++aei+ivd++f+Rvga+Ddl +++stFmvEmlE + il++at +slvi+DE+GRGt+++dGlaia 
  CDO72395.1 719 IITGPNMAGKSTLLRQTALIAILAQTGSFVPADYAEIGIVDRVFSRVGAKDDLFRDRSTFMVEMLEASDILRRATPNSLVIMDEVGRGTTVEDGLAIAF 817
                 9************************************************************************************************** PP

                 HHHHHHHHTT--EEEEEES-GGGGGHHHH..........STTEEEEEEEEEEET.TEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHHH CS
      MutS_V 101 avaeyllekikaktlfatHyheltklaek..........leevknlhlavkeee.edivflykvkegaaeksyGikvaklaglPesvverArevlke 186
                 a +++ll+ + ++++fatH+helt++             +++++ +  +v+e e   +++ + +++g++++s+G+kva+lag+Pes ++ Ar++l+ 
  CDO72395.1 818 AAVHHLLTVNGCRAMFATHFHELTDMLGYdpvthqgqgpFSQIAFYCTDVDEVEdGYFTYSHLLSPGVNRNSHGLKVAQLAGMPESAINVARSALTW 914
                 ************************987653333233333344666666666655378999999****************************998875 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   4.8   3.4e-41     6e-38       1     191 []     330     664 ..     330     664 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 3.4e-41
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislgkakardlk 98 
                 +T+r+Lei+e +r+g+++gsLl+v++rTvT +G+RlL +wl++P+t+++eIn+R+++V++   ++ lr++l +llr  +D  R+++++ lg+++  dl+
  CDO72395.1 330 HTVRALEIREGMREGGSTGSLLSVIKRTVTTSGTRLLSRWLCSPSTSVTEINTRQSLVAFfHAKPFLRQDLLQLLRDAEDATRIVQKFLLGRGSFFDLS 428
                 59*******99999999******************************************98889******************************99*** PP

                 HHHHHHHHHHTTTTT---SSTHHHHH...................HHHH...HHHHHHB-SS--SSGGGS--B-T........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxx...xxxxxxxxxxxxxxxxxxxxxxx........................ RF
    MutS_III  99 allealkaleelvallekeklaesee...................esla...elleeaideeplalekegedlra........................ 151
                 a+ ++++ + +++a   +e++ e++e                   ++l+   + ++ a+++ ++a+ +++e+ ++                        
  CDO72395.1 429 AICTTIDIWSSIKAKILEEREIERQEgrlidesqwasiialmdrlSDLSglgSKIRMALVQRTPAAIEDEEIAEHlpsslspmqtrdfrnplgllewti 527
                 *99999999888888877777666668999999999999888877333344477777788888888888888888888888888888999999999999 PP

                 .................................................................................................HH CS
                 .................................................................................................xx RF
    MutS_III 152 .................................................................................................ie 153
                                                                                                                  i 
  CDO72395.1 528 rpefssqlktlhstlqslldekdklerrlqtlfdaptltlraspgqgmhvhvarkshasqlksskdfvalsesgttctffnrewsqlaaqicettmaIS 626
                 9999999999999999999999999999999999***************************************************************99 PP

                 HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 154 aleqelfqelleeveealerlrrlaealaeLDvllSlA 191
                  +e+e+f+ l++ev+++++ lrr+a++++eLDv l++A
  CDO72395.1 627 TAEKEAFELLRNEVTAHSHFLRRNARIIDELDVTLAFA 664
                 999**********************************9 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   2.4e-26   4.3e-23       2     112 ..      39     151 ..      38     152 .. 0.86
   2 ?   -3.9   0.0       9.1   1.6e+04      51      67 ..     889     906 ..     884     910 .. 0.69

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 2.4e-26
                 HHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHT.T-EEEEEEE-S-HHHH..S.S-- CS
      MutS_I   2 plmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvek.gykVavveqtetpaek..kgvvk 97 
                 pl +  l+  ++y++++l+ rvG+fYe ++++A  ++r+l+i+ltk++   +++i m+g+P + l+kyl+ Lv+     Va++e    +     kg ++
  CDO72395.1  39 PLANEILDNLARYPHCILLTRVGQFYESYFDQAAEVSRLLNIKLTKKTW-GGQRILMCGFPLMHLNKYLKMLVQDhSRFVAMCEEFPRNPSLgaKGGFE 136
                 555666666678*********************************7775.5556********************64888******86544435699*** PP

                 EEEEEEEBTTC-TTS CS
      MutS_I  98 revvrviTpGtltde 112
                 r+vvr++TpGtl+de
  CDO72395.1 137 RRVVRIVTPGTLIDE 151
                 ************986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.1
                 SSSC..EEEEEEEHHHHH CS
      MutS_I  51 sseke.ipmagvPehale 67 
                 s++ +  + ag+Pe+a++
  CDO72395.1 889 SHGLKvAQLAGMPESAIN 906
                 444455788999998876 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   7.2e-13   1.3e-09       6      59 ..     177     229 ..     160     250 .. 0.84
   2 ?   -3.8   0.1       8.3   1.5e+04      22      44 ..     535     558 ..     532     562 .. 0.61

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 7.2e-13
                 EEEETTTSE.EEEEEEETTTTEEEEEEEEE-HHHHHHHHHH-ESEEEEESS-SCC CS
     MutS_II   6 isekregrr.vGlafiDlstgefvvsefedfeeleaeLsrlsPkElllpedlses 59 
                 +se  +++  vGla+iD+stgef++ +++  + l +eL+r+sPkE++l++  se+
  CDO72395.1 177 LSE-SSASVqVGLAWIDVSTGEFYTRSIP-LAGLRDELVRISPKEVVLDQRSSED 229
                 444.444555*******************.9******************998876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.3
                 TTTTEEEEEEEEE.-HHHHHHHHH CS
     MutS_II  22 lstgefvvsefed.feeleaeLsr 44 
                 l+t    +++  d  ++le +L+ 
  CDO72395.1 535 LKTLHSTLQSLLDeKDKLERRLQT 558
                 556666666666666666666654 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.9e-08   0.00012      14      44 ..     704     733 ..     694     752 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 6.9e-08
      AAA_27  14 ftdrsldfsaeeadlhliyGpNEAGKstalr 44 
                 ft ++++f   +++lh+i GpN AGKst+lr
  CDO72395.1 704 FTPNTVTFT-PDSRLHIITGPNMAGKSTLLR 733
                 99999***9.89*****************98 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.27   4.9e+02     124     177 ..     417     557 ..     336     590 .. 0.63
   2 !   16.7   0.0   4.6e-06    0.0082      10      37 ..     704     733 ..     702     759 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.27
      AAA_23 124 llgskkiilnlilflgqerfeefelkdkke..................................................................... 153
                  l  + + ++l++++   + +   +++ +e                                                                     
  CDO72395.1 417 FLLGRGSFFDLSAICTTIDIWSSIKAKILEereierqegrlidesqwasiialmdrlsdlsglgskirmalvqrtpaaiedeeiaehlpsslspmqtrd 515
                 444555555555555555533333333333333334444444444444444444444444444444444444444444444444445555666665555 PP

      AAA_23 154 ..................rleelekeleeledekkllekleq 177
                                   +l+ l   l+ l dek++le+++q
  CDO72395.1 516 frnplgllewtirpefssQLKTLHSTLQSLLDEKDKLERRLQ 557
                 556666666666666666777777777777777777766654 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.6e-06
      AAA_23  10 frdqeidF..skgltlItGpNGaGKTTild 37 
                 f   ++ F  ++ l +ItGpN aGK+T+l+
  CDO72395.1 704 FTPNTVTFtpDSRLHIITGPNMAGKSTLLR 733
                 544455554499****************95 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.2e-06     0.016      12      39 ..     704     732 ..     702     747 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.2e-06
      AAA_29  12 fdghtieidlkg.atlltGpsGsGKSTll 39 
                 f+ +t+++++++  +++tGp+ +GKSTll
  CDO72395.1 704 FTPNTVTFTPDSrLHIITGPNMAGKSTLL 732
                 55567888888889**************9 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001      0.19       3      82 ..     716     812 ..     714     833 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
      AAA_14   3 kilvitGaRrvGKTtllkqlikell......vkkesilyinldderd.......kkladpe...kllelileklke......ekktylflDEiqevpew 79 
                 ++ +itG+  +GK+tll+q +   +        + ++ +i + d  +       +    ++   +++ ++le   +        ++++++DE+ + +++
  CDO72395.1 716 RLHIITGPNMAGKSTLLRQTALIAIlaqtgsFVPADYAEIGIVDRVFsrvgakdD---LFRdrsTFMVEMLEA--SdilrraTPNSLVIMDEVGRGTTV 809
                 6679***************985444645555333444444433333354443221...122222344333333..023445666788999999887777 PP

      AAA_14  80 eka 82 
                 e+ 
  CDO72395.1 810 EDG 812
                 665 PP

>> SASRP1  Spermatogenesis-associated serine-rich protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.18      68     117 ..     492     547 ..     449     558 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
      SASRP1  68 lpevqkekypeef..sllklqtkdgqrp....ewtfyprfssnihtyhvgkqcffn 117
                  + +++e+  e +  sl  +qt+d + p    ewt+ p fss+++t h   q +++
  CDO72395.1 492 PAAIEDEEIAEHLpsSLSPMQTRDFRNPlgllEWTIRPEFSSQLKTLHSTLQSLLD 547
                 4455555555554438889*******9999999***************99888765 PP

>> DUF3126  Protein of unknown function (DUF3126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.26       1      33 [.     548     580 ..     548     585 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
     DUF3126   1 EiaklqayLrrtfgneklkvkarpkkddsaEvy 33 
                 E +kl++ L+ +f  ++l+++a p +++ + v+
  CDO72395.1 548 EKDKLERRLQTLFDAPTLTLRASPGQGMHVHVA 580
                 568*************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 5845.72
//
Query:       CDO72396.1  [L=775]
Description: hypothetical protein BN946_scf184977.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.7e-139  465.2   0.1   1.8e-138  462.4   0.1    1.9  1  Aconitase    Aconitase family (aconitate hydratase)
    7.5e-35  120.1   0.0    1.5e-34  119.1   0.0    1.5  1  Aconitase_C  Aconitase C-terminal domain
    0.00017   20.4   0.0     0.0011   17.7   0.0    1.9  2  DUF521       Protein of unknown function (DUF521)


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.4   0.1    3e-142  1.8e-138       1     461 []      50     474 ..      50     474 .. 0.93

  Alignments for each domain:
  == domain 1  score: 462.4 bits;  conditional E-value: 3e-142
   Aconitase   1 ekiwdahlv..ee........egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernker 86 
                 eki+++h++  e+        +g+ y+   p+rv++qd+++++al ++++a+ +             +vp+++++dh+++a+e++ek+l++++ +n+e+
  CDO72396.1  50 EKILYSHIHepERtlanggikRGETYLqlkPERVAMQDASAQMALLQFMSAGMSR-----------CAVPASIHCDHLIQAAEGAEKDLKRSIVTNQEV 137
                 799999988551156666665556666667**********************999...........9******************************** PP

   Aconitase  87 yefLksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlv 185
                 ++fL+saa+++gi++++pg+GI+Hq++lE+ +a pg++++gtDSHT+++gglG+laiGvGg++a+++l+g+p+elk+p+++gv+ltG+l+ ++t+kDl+
  CDO72396.1 138 FDFLESAARKYGIEFWKPGSGIIHQIVLEN-YAAPGMLMLGTDSHTPNAGGLGMLAIGVGGADAVDALTGTPWELKAPRIIGVHLTGQLSGWATPKDLI 235
                 ******************************.******************************************************************** PP

   Aconitase 186 lavigklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalfelaadedaeydkvleldl 284
                 l+++gkl+++g++g ++E+fG+gv + s+++ aT+aNM+aEvGAtt++fp++ ++ +YL+atgr+++a   +a+dka++   l+ de+aeyd++++++l
  CDO72396.1 236 LHLAGKLTVRGGTGSILEYFGPGVFNQSCTGLATVANMGAEVGATTSTFPYTPRMRAYLQATGRAPVA---AAADKAARNGFLSPDEHAEYDEIIQINL 331
                 ****************************************************************9998...4555555544599*************** PP

   Aconitase 285 stlepsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPG 383
                 s+lep+++gp++P+ a+pls++ +  f                +++g+k +   +++a+igSCTNss+ed++ +a+l+++a+++glk+k   +++v+PG
  CDO72396.1 332 SELEPTINGPFTPDLATPLSKFGS--FV---------------KENGWKDE---LSAALIGSCTNSSYEDMTSVADLARQAKQAGLKTKV--PFLVTPG 408
                 *******************77774..44...............6789***9...*******************************88776..******* PP

   Aconitase 384 SevvkayleaeGlleiLekaGfevvgagCstCignsdrleegeaivsssNRNFegRq..gpntrayLaSPelvvaaAlaG 461
                 Se+++a++e++ +++ Le++G++v++++C              ai++s+NRNF+ R+  ++ t+++LaSP +v+a+A++G
  CDO72396.1 409 SEQIRATIERDQITKELEDVGATVLANAC--------------AILTSFNRNFKSRNdgNRLTMNFLASPTIVTAMAFSG 474
                 *****************************..............68************53355556************998 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   2.5e-38   1.5e-34       3     128 ..     565     694 ..     563     697 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 2.5e-38
                  CCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEE....EHHHHHHHHHHTT--EEEE--SSBTBS---THHHHH CS
  Aconitase_C   3 kllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgeke....dvvdaaerykkegaklvviagknfGeGSSRehAAka 96 
                  +l++++G++t+d++s+++++lk+++++ ++++n+ l++ + e+ ++n + d d +++e     ++  a+r+k  ++++ +i ++n+GeGS+RehAA++
   CDO72396.1 565 VLMRVRGKCTTDHISAAGPWLKYKGHLTNISENLLLQAVNDEGGEVNVAFDHDHSPTEsetdTIPAVAKRFKARKQPWALIVDENYGEGSAREHAALQ 662
                  67899******************************************99988888777666688999******************************* PP

                  HHHTTEEEEEES-B-HHHHHHHHHTT-EEEEE CS
  Aconitase_C  97 lrllGikaviaeSFerIfennliknglLplef 128
                  +r++G  +++a SF+rI+e+nl+k+g+Lpl f
   CDO72396.1 663 PRFYGCAMIVARSFARIHETNLKKQGILPLWF 694
                  ******************************87 PP

>> DUF521  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.049   2.9e+02     340     377 ..     247     283 ..     240     300 .. 0.82
   2 !   17.7   0.0   1.9e-07    0.0011     298     366 ..     374     446 ..     358     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.049
      DUF521 340 glveklekaGvkvlsdtCmvvsplikkkevkkvatnSg 377
                 g+ ++le +G  v++++C+ ++ ++++  +++ at S 
  CDO72396.1 247 GTGSILEYFGPGVFNQSCTGLATVANMG-AEVGATTST 283
                 566789*****************99996.999999994 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.9e-07
      DUF521 298 cPhlsleElrelaell...kgkkkkvkvelwvttsre.vkeeaerlglveklekaGvkvlsdtCmvvsplikk 366
                 c   s+e++ ++a+l    k+ + k kv+++vt + e +++++er  ++++le+ G++vl++ C +++ + ++
  CDO72396.1 374 CTNSSYEDMTSVADLArqaKQAGLKTKVPFLVTPGSEqIRATIERDQITKELEDVGATVLANACAILTSFNRN 446
                 55566777766666664448888899*******8654499*************************99777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5049.74
//
Query:       CDO72397.1  [L=213]
Description: hypothetical protein BN946_scf184977.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1591.61
//
Query:       CDO72398.1  [L=294]
Description: hypothetical protein BN946_scf184977.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-52  176.6  13.3      7e-52  176.6  13.3    1.4  2  ATG16          Autophagy protein 16 (ATG16)
     0.0023   17.5   0.8     0.0023   17.5   0.8    2.3  2  Flagellar_rod  Paraflagellar rod protein
     0.0056   16.9  24.9      0.077   13.2   4.8    3.0  3  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
  ------ inclusion threshold ------
      0.053   14.2   3.1      0.053   14.2   3.1    3.1  3  YabA           Initiation control protein YabA
       0.15   12.5   6.5         16    6.0   0.1    3.4  3  FlaC_arch      Flagella accessory protein C (FlaC)
       0.48    9.2  20.5      0.033   13.1   6.8    2.4  3  Spc7           Spc7 kinetochore protein
       0.71   11.0  14.8       0.33   12.1   3.6    2.8  2  SOGA           Protein SOGA
        1.1    9.1   5.0        2.9    7.8   0.2    3.3  3  DASH_Dam1      DASH complex subunit Dam1
        1.4    9.5  10.2       0.27   11.7   0.5    3.2  3  Cep57_MT_bd    Centrosome microtubule-binding domain of Cep57
        2.1    7.4  14.8        1.7    7.7   1.4    2.4  3  Atg14          Vacuolar sorting 38 and autophagy-related subu
        2.3    8.7  29.0       0.96    9.9  10.1    4.5  2  ZapB           Cell division protein ZapB
        3.1    7.9   6.3        1.9    8.5   1.8    2.2  2  DUF1664        Protein of unknown function (DUF1664)
        4.2    7.8  20.6       0.56   10.6   4.7    3.0  3  CENP-H         Centromere protein H (CENP-H)
        8.3    6.6  12.2        9.7    6.4   2.3    2.3  2  Fib_alpha      Fibrinogen alpha/beta chain family
        9.2    6.8   9.6        4.3    7.9   0.8    2.4  2  DUF16          Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6  13.3   5.8e-55     7e-52       3     200 .]      11     223 ..       9     223 .. 0.94
   2 ?   -3.5   0.1       8.5     1e+04      37      47 ..     236     246 ..     229     283 .. 0.46

  Alignments for each domain:
  == domain 1  score: 176.6 bits;  conditional E-value: 5.8e-55
       ATG16   3 laqLreRdarqekafaeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgela 101
                 + +L eR+ar e ++a +i++y+rL+++t++l+++na+l +a+ +a++++ss+  +   + + + +n++++a+i+sle+++++lr+ela++yk++g++a
  CDO72398.1  11 RLRLVERNAR-ECSYAPIIEQYRRLAQQTKLLKERNASLLRAMGNARPNPSSS--TVFVPGTGD-DNPVRAAYIASLESQISSLRDELATVYKTQGQNA 105
                 679******9.*********************************999844433..333333333.599******************************* PP

       ATG16 102 qrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq...................dlqDElsaLqlqlnqaEeklrklekEN 181
                 qrll++ne+l+++ee ++ d+e+l+++++e+a l++k+++++e ++ek+++ q                   +l+DE+++Lql+l+q+Ee++++l+k+N
  CDO72398.1 106 QRLLAMNETLREKEELSRLDAENLRKARDEIAILRKKVEQHNELMAEKDRTAQvrsmtpppqyvlvpkpviqILHDEITTLQLELSQIEERNQTLTKDN 204
                 *************************************************************************************************** PP

       ATG16 182 keLveRWmkrkaqeAekmN 200
                 ++L++RW++ k+ e ++mN
  CDO72398.1 205 AKLLQRWLDAKQAEVNRMN 223
                 ******************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.5
       ATG16  37 enaklekaaas 47 
                 ++a+l+k+ + 
  CDO72398.1 236 RQAALNKSVSI 246
                 23333222222 PP

>> Flagellar_rod  Paraflagellar rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.0      0.71   8.5e+02       6     232 ..     111     145 ..     103     163 .. 0.59
   2 !   17.5   0.8   1.9e-06    0.0023      65     120 ..     188     244 ..     172     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.71
  Flagellar_rod   6 vidakkrlkeaveeDlekikekreeeaaadekqrkrykaqreesdkflqeneeqqeklvreieelereLqklaeerrelvedrieaeerEekRetd 101
                    + +  +++ e  + D+e++ ++r e+a  ++k                                                                
     CDO72398.1 111 MNETLREKEELSRLDAENLRKARDEIAILRKKVE-------------------------------------------------------------- 144
                    5566666666666777777777777666555433.............................................................. PP

  Flagellar_rod 102 yeeFlkvaeqhkqkLrktlenldkaldlarsleelVkegvkklkakqdklqnalselllevrkefleafralyltlgeltykKerrleeldrqirl 197
                                                                                                                    
     CDO72398.1   - ------------------------------------------------------------------------------------------------   -
                    ................................................................................................ PP

  Flagellar_rod 198 aeiqrelamesldPnakeyseakkelleqkkevee 232
                                                      +
     CDO72398.1 145 ----------------------------------Q 145
                    ..................................2 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.9e-06
  Flagellar_rod  65 reieelereLqklaeerrelvedrieaeerEekRetdyeeFlk.vaeqhkqkLrktl 120
                     e+ + e++ q+l++  ++l ++++ a+++E +R  ++++F + + ++++++L+k++
     CDO72398.1 188 LELSQIEERNQTLTKDNAKLLQRWLDAKQAEVNRMNEANQFYEeLQSRRQAALNKSV 244
                    46777777778******************************9626677777888776 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.34   4.1e+02      64      89 ..      29      54 ..       7      56 .. 0.73
   2 !   11.3   7.1   0.00025       0.3      21      91 ..      80     154 ..      77     159 .. 0.80
   3 !   13.2   4.8   6.4e-05     0.077      21      84 ..     176     240 ..     173     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.34
  TMF_TATA_bd 64 keleelekeleelqeryetlLellGe 89
                 ++++ l ++ + l+er  +lL  +G 
   CDO72398.1 29 EQYRRLAQQTKLLKERNASLLRAMGN 54
                 56777888999999999999998885 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00025
  TMF_TATA_bd  21 irrlEgElaslkeelerleaerdeareeivklm...keneelkelk.keleelekeleelqeryetlLellGeks 91 
                  i +lE++++sl++el+++ + + + ++ ++++    +e eel++l+ ++l++ + e++ l+++ e+  el+ ek+
   CDO72398.1  80 IASLESQISSLRDELATVYKTQGQNAQRLLAMNetlREKEELSRLDaENLRKARDEIAILRKKVEQHNELMAEKD 154
                  789*******************9999999988722245555555441567888889***************9996 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 6.4e-05
  TMF_TATA_bd  21 irrlEgElaslkeelerleaerdeareeivklmke.neelkelkkeleelekeleelqeryetlL 84 
                  i+ l  E+++l+ el+++e+  ++++++ +kl+++  ++++++ ++++e ++ +eelq+r +++L
   CDO72398.1 176 IQILHDEITTLQLELSQIEERNQTLTKDNAKLLQRwLDAKQAEVNRMNEANQFYEELQSRRQAAL 240
                  566788**************************976379999999******************998 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.2   2.7e+03      21      41 ..      28      48 ..      16      60 .. 0.67
   2 ?    2.1   4.1      0.26   3.1e+02      13      53 ..      83     130 ..      77     162 .. 0.41
   3 ?   14.2   3.1   4.4e-05     0.053      17      74 ..     176     233 ..     173     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
                HHHHHHHHHHHHHHHHHHHHH CS
        YabA 21 leeleelkeelaelleenaeL 41
                 e+ ++l ++++ l e+na+L
  CDO72398.1 28 IEQYRRLAQQTKLLKERNASL 48
                455556666666666666655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHH..........X CS
        YabA  13 leeqleelleeleelkeelaelle....enaeLeleneklrerl..........e 53 
                 le+q       +++l++ela++++    + ++L + ne+lre+           +
  CDO72398.1  83 LESQ-------ISSLRDELATVYKtqgqNAQRLLAMNETLREKEelsrldaenlR 130
                 3333.......33333333333321110234455555555554422322222220 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  17 leelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLa 74 
                 ++ l++e+++l+ el+++ e+n++L+ +n kl +r  +++++e ++ +e ++ +e+L+
  CDO72398.1 176 IQILHDEITTLQLELSQIEERNQTLTKDNAKLLQRWLDAKQAEVNRMNEANQFYEELQ 233
                 567899**************************99998888888888888888888876 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.013        16       2      38 ..      80     116 ..      79     118 .. 0.76
   2 ?    3.5   0.2     0.082        98       7      34 ..     119     147 ..     117     152 .. 0.88
   3 ?    4.9   0.3     0.029        35       7      38 ..     181     205 ..     176     211 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
   FlaC_arch   2 idelEnklsklsteletvkkeneelsksveelkenVk 38 
                 i +lE+++s+l  el+tv k++ +  + +  ++e+ +
  CDO72398.1  80 IASLESQISSLRDELATVYKTQGQNAQRLLAMNETLR 116
                 5578888888888888888888888777777777765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.082
   FlaC_arch   7 nklsklst.eletvkkeneelsksveelk 34 
                 ++ls+l+  +l  +++e+  l+k+ve+ +
  CDO72398.1 119 EELSRLDAeNLRKARDEIAILRKKVEQHN 147
                 6899999989***************9865 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.029
   FlaC_arch   7 nklsklsteletvkkeneelsksveelkenVk 38 
                         e++t++ e++++++  ++l ++  
  CDO72398.1 181 D-------EITTLQLELSQIEERNQTLTKDNA 205
                 4.......455555555555555555544333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       4.1   4.9e+03     174     190 ..      29      45 ..      24      49 .. 0.58
   2 ?   13.1   6.8   2.8e-05     0.033     156     227 ..      85     155 ..      77     162 .. 0.86
   3 ?    4.6   2.7      0.01        12     173     263 ..     180     235 ..     171     251 .. 0.38

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.1
        Spc7 174 eekaeleeeleklqeaa 190
                 e++ +l ++ + l+e++
  CDO72398.1  29 EQYRRLAQQTKLLKERN 45 
                 55556666666666554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.8e-05
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqe 227
                 +++++ ++el ++++   ++ ++l +  e+l+e +eel+ +d e+L+++r+e+a l +++e++++ +ae+ +
  CDO72398.1  85 SQISSLRDELATVYKTQGQNAQRLLAMNETLRE-KEELSRLDAENLRKARDEIAILRKKVEQHNELMAEKDR 155
                 577888888888999999999999999999999.889************************99998888765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.01
        Spc7 173 eeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgw 263
                 + e ++l+ el +++e+++ l++ + + L+   ++ ++  +                                   +++ea++++ee ++ 
  CDO72398.1 180 HDEITTLQLELSQIEERNQTLTKDNAKLLQRWLDAKQAEVN-----------------------------------RMNEANQFYEELQSR 235
                 33333333333333333333333323222222222222222...................................233333333332222 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.6   0.00028      0.33      23      87 ..      80     145 ..      77     153 .. 0.88
   2 ?    3.8   3.5      0.11   1.3e+02      10      75 ..     177     236 ..     173     260 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00028
        SOGA  23 lseleeenkqlteeLnk.yksklgeeessleeeeeassdsskeaelkeeLklarlqineLsgkvvk 87 
                 ++ le +  +l+ eL+  yk++ ++ ++ l+ +e+  ++++ ++   e+L+ ar +i +L +kv +
  CDO72398.1  80 IASLESQISSLRDELATvYKTQGQNAQRLLAMNETLREKEELSRLDAENLRKARDEIAILRKKVEQ 145
                 7889***********864899888899999998888888888888999***************975 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
        SOGA  10 qfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklar 75 
                 q   +E + l  +ls++ee n+ lt++ +k+     + ++++       + ++++++  eeL++ r
  CDO72398.1 177 QILHDEITTLQLELSQIEERNQTLTKDNAKLLQRWLDAKQAE------VNRMNEANQFYEELQSRR 236
                 677888899999999999999999998777655444444333......333344444444444443 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.25     3e+02       1      29 [.      83     115 ..      83     120 .. 0.69
   2 ?   -0.6   0.1      0.99   1.2e+03       5      34 ..     129     148 ..     125     152 .. 0.53
   3 ?    7.8   0.2    0.0024       2.9       3      31 ..     174     202 ..     173     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
   DASH_Dam1   1 lepafaeLaDsletLdk....nledLqqihesL 29 
                 le ++++L D+l+t+ k    n ++L  ++e+L
  CDO72398.1  83 LESQISSLRDELATVYKtqgqNAQRLLAMNETL 115
                 578999999999998542222667777766666 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.99
   DASH_Dam1   5 faeLaDsletLdknledLqqihesLsdfNe 34 
                 +++  D+++ L+k++e+           Ne
  CDO72398.1 129 LRKARDEIAILRKKVEQ----------HNE 148
                 44445566666666555..........444 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0024
   DASH_Dam1   3 pafaeLaDsletLdknledLqqihesLsd 31 
                 p ++ L+D+++tL+  l+++++ +++L++
  CDO72398.1 174 PVIQILHDEITTLQLELSQIEERNQTLTK 202
                 77899*****************9999986 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2         1   1.2e+03      14      40 ..      84     110 ..      80     124 .. 0.54
   2 ?    1.9   1.6      0.26   3.1e+02       9      46 ..     117     158 ..     109     163 .. 0.71
   3 ?   11.7   0.5   0.00023      0.27       8      44 ..     165     203 ..     159     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1
  Cep57_MT_bd  14 aevlkeLedEfehlklelqelaaqyna 40 
                  ++ +  L dE++   +   + a+++ a
   CDO72398.1  84 ESQISSLRDELATVYKTQGQNAQRLLA 110
                  444555666665555444444444444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.26
  Cep57_MT_bd   9 pkeaL....aevlkeLedEfehlklelqelaaqynaldpslg 46 
                   ke+L    ae l++  dE++ l+++ ++ ++ + + d  ++
   CDO72398.1 117 EKEELsrldAENLRKARDEIAILRKKVEQHNELMAEKDRTAQ 158
                  455553334666889999999999999999998888886555 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00023
  Cep57_MT_bd   8 spkeaL..aevlkeLedEfehlklelqelaaqynaldps 44 
                  +p+ +L  + v++ L+dE++ l+lel++ +++ + l++ 
   CDO72398.1 165 PPQYVLvpKPVIQILHDEITTLQLELSQIEERNQTLTKD 203
                  7888898899********************999988854 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.2     5e+03     103     117 ..      33      47 ..      26      59 .. 0.55
   2 ?    7.0   3.7    0.0023       2.7      58     117 ..      97     156 ..      73     164 .. 0.62
   3 ?    7.7   1.4    0.0014       1.7      69     136 ..     176     243 ..     169     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.2
       Atg14 103 klaklsdklkkRrsd 117
                 +la++ + lk+R+++
  CDO72398.1  33 RLAQQTKLLKERNAS 47 
                 344444444444433 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0023
       Atg14  58 ledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsd 117
                   +   +++++l  +  + ++++e  ++  + l++ ++ei++ +kk++++++ ++++ ++
  CDO72398.1  97 VYKTQGQNAQRLLAMNETLREKEELSRLDAENLRKARDEIAILRKKVEQHNELMAEKDRT 156
                 334444555555555555555555566667777788889999999999999999855544 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0014
       Atg14  69 leelksliadlrerlqelkdklsqlkkeieekkkk.laklsdklkkRrsdleslqneleerrkkqiakl 136
                 ++ l  +i  l+ +l++++++ ++l+k +++  ++ l ++++++  R+ +++  ++el++rr++ ++k 
  CDO72398.1 176 IQILHDEITTLQLELSQIEERNQTLTKDNAKLLQRwLDAKQAEV-NRMNEANQFYEELQSRRQAALNKS 243
                 56666777777777888888888887777776555255555555.799999999999999999888765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.022        27      14      38 ..      25      49 ..      21      62 .. 0.73
   2 ?    9.9  10.1    0.0008      0.96      14      49 ..     177     227 ..     175     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.022
        ZapB 14 qkaidtitlLqmeieeLkeeneelk 38
                   i+++++L ++ + Lke+n++l 
  CDO72398.1 25 APIIEQYRRLAQQTKLLKERNASLL 49
                5567888888888888888887764 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0008
        ZapB  14 qkaidtitlLqmeieeLkeeneelkeenrele...............eene 49 
                 q + d+it+Lq e+++ +e+n++l++ n++l                e n+
  CDO72398.1 177 QILHDEITTLQLELSQIEERNQTLTKDNAKLLqrwldakqaevnrmnEANQ 227
                 56679***********************99998888887766655542222 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.8    0.0016       1.9      45     111 ..      82     151 ..      77     159 .. 0.80
   2 ?    1.3   0.2      0.28   3.4e+02      86     106 ..     180     200 ..     173     238 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0016
     DUF1664  45 svskqleqvs...eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeave 111
                 s+ +q+ ++    +++ +t+ + ++r+  ++++l e +e+s+  +e++ ++r++++ ++++ve+ +e++ 
  CDO72398.1  82 SLESQISSLRdelATVYKTQGQNAQRLLAMNETLREKEELSRLDAENLRKARDEIAILRKKVEQHNELMA 151
                 5555666665111445567888899999**********************************99887765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
     DUF1664  86 keevtevredlseigedvesv 106
                 ++e+t+++ +ls+i+e  +++
  CDO72398.1 180 HDEITTLQLELSQIEERNQTL 200
                 344444444444444433333 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   1.9e+03      27      50 ..      29      52 ..      15      62 .. 0.72
   2 ?    4.1   5.2      0.05        60      15      78 ..      80     146 ..      73     162 .. 0.61
   3 ?   10.6   4.7   0.00047      0.56      18      82 ..     179     243 ..     175     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
      CENP-H 27 eeltevekenlrlkrknrelaael 50
                e+  ++ ++++ lk++n++l++ +
  CDO72398.1 29 EQYRRLAQQTKLLKERNASLLRAM 52
                455566677777777777776655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.05
      CENP-H  15 llklsqelrelqeeltevekenlrlkrknrelaaellelakekesek......eklkeelekleaelkks 78 
                 ++ l++++++l++el++v k + +  ++   + ++l   ++++e  +       k+++e++ l++++++ 
  CDO72398.1  80 IASLESQISSLRDELATVYKTQGQNAQRLLAMNETL---REKEELSRldaenlRKARDEIAILRKKVEQH 146
                 677788888888888887665443333333333333...2222222244556667888888888888765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00047
      CENP-H  18 lsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkksrqrw 82 
                 l+ e+++lq el+++e+ n  l++ n++l+++ l  ++++ ++ +++++  e+l++  +++ +++
  CDO72398.1 179 LHDEITTLQLELSQIEERNQTLTKDNAKLLQRWLDAKQAEVNRMNEANQFYEELQSRRQAALNKS 243
                 78899999***********************9965555544444777888888888887777766 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.3    0.0081       9.7      32     101 ..      82     147 ..      77     161 .. 0.77
   2 ?    5.2   2.5     0.018        22      33      90 ..     179     236 ..     175     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0081
                 CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH CS
   Fib_alpha  32 dvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe 101
                 +++ ++++l++el+++ +++ +  +   +++++lrek++ ++   + ++k ++    ei+ l++++ ++ 
  CDO72398.1  82 SLESQISSLRDELATVYKTQGQNAQRLLAMNETLREKEELSRLDAENLRKARD----EIAILRKKVEQHN 147
                 67889999********9999999999999999999999998865555555544....4446666666554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
                 CCHHHCCCCCCCCCCCCHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
   Fib_alpha  33 vkkdlekleneleeisnstkea.eelvkeikdslrekqkskkdndnvikksskeleeei 90 
                 +++++++l+ el++i++++++  ++  k ++  l +kq++ +   n  +++ +el+++ 
  CDO72398.1 179 LHDEITTLQLELSQIEERNQTLtKDNAKLLQRWLDAKQAEVN-RMNEANQFYEELQSRR 236
                 6789************99988615566666666666666666.6777788888887543 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.8    0.0036       4.3      28      86 ..      98     158 ..      74     163 .. 0.85
   2 ?    3.0   2.3      0.12   1.4e+02      41      87 ..     184     228 ..     176     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0036
                 B-....BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHH CS
       DUF16  28 fkds..nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetle 86 
                 +k +  n qrL  ++++++ ++e     +++ +k  ++i  l++++++ +e + + d+t +
  CDO72398.1  98 YKTQgqNAQRLLAMNETLREKEELSRLDAENLRKARDEIAILRKKVEQHNELMAEKDRTAQ 158
                 66556699***********99999999999*****************99999998888876 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
                 HHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHH CS
       DUF16  41 akvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlel 87 
                 ++++    qi++ +q+ +k ++k+  l+   +a+++e+n+++e+ ++
  CDO72398.1 184 TTLQLELSQIEERNQTLTKDNAKL--LQRWLDAKQAEVNRMNEANQF 228
                 566777788888999999888888..99999*********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1637  (0.0913046); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 2157.32
//
Query:       CDO72399.1  [L=249]
Description: hypothetical protein BN946_scf184977.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-57  194.0   0.2    1.5e-57  193.7   0.2    1.1  1  Ras              Ras family
    2.7e-32  111.5   0.0    4.4e-32  110.8   0.0    1.3  1  Roc              Ras of Complex, Roc, domain of DAPkinase
    3.8e-14   52.5   0.0    4.8e-14   52.2   0.0    1.1  1  Arf              ADP-ribosylation factor family
    2.1e-07   31.0   0.0    3.9e-07   30.2   0.0    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
    1.4e-06   27.8   0.0    1.8e-06   27.5   0.0    1.2  1  Gtr1_RagA        Gtr1/RagA G protein conserved region
    2.9e-06   27.0   0.0    6.3e-05   22.6   0.0    2.2  1  GTP_EFTU         Elongation factor Tu GTP binding domain
    9.4e-05   22.4   0.2     0.0056   16.6   0.1    2.3  2  RsgA_GTPase      RsgA GTPase
    0.00078   19.3   0.5      0.025   14.3   0.1    2.1  2  ATP_bind_1       Conserved hypothetical ATP binding protein
    0.00098   18.9   0.1       0.21   11.3   0.0    2.2  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0027   17.3   0.0     0.0083   15.7   0.0    1.7  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0047   16.2   0.2      0.067   12.5   0.0    2.2  2  Septin           Septin
     0.0081   15.6   0.0      0.012   15.0   0.0    1.3  1  SRPRB            Signal recognition particle receptor beta su
     0.0088   16.4   0.0      0.015   15.7   0.0    1.6  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.025   14.9   0.0    1.7  1  AAA_22           AAA domain
      0.019   14.5   0.0      0.032   13.7   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.025   14.3   0.0      0.047   13.4   0.0    1.5  1  AAA_24           AAA domain
      0.038   14.0   0.0      0.066   13.2   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
      0.058   13.3   0.5       0.11   12.4   0.0    1.6  2  ATPase_2         ATPase domain predominantly from Archaea
      0.069   13.3   0.1       0.16   12.2   0.1    1.7  1  Ribonuc_red_2_N  Class II vitamin B12-dependent ribonucleotid
      0.079   12.9   0.0       0.14   12.1   0.0    1.4  1  NTPase_1         NTPase
      0.099   12.6   0.0       0.19   11.6   0.0    1.4  1  NACHT            NACHT domain
       0.11   12.8   0.0       0.16   12.2   0.0    1.4  1  Glyco_hydro_75   Fungal chitosanase of glycosyl hydrolase gro
       0.19   12.3   0.0        1.3    9.6   0.0    2.0  2  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.2   1.9e-60   1.5e-57       1     161 [.      53     219 ..      53     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 1.9e-60
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K++++Gds+vGKtsl++++v+++F+++y++Tig+df+tke++vd++ v++++wDTAGqe+f+sl  ++yr+a++++lvyd++s++sfe++++w +e+  
  CDO72399.1  53 KVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVMVDDRLVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFETLDSWRDEFLI 151
                 89**********************************************************************************************999 PP

                 HST....TTSEEEEEEETTTGGG.G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae....envpivLvGnKvDlee.kravsteegeelakelg.lkfletSAktnenveeafeellreil 161
                 +a+    en+p+v++GnK+D+ee kr+vs++++ ++++++g ++++etSAk++ nve+af+++++++l
  CDO72399.1 152 QASphdpENFPFVVLGNKIDMEEsKRQVSQKRAMTWCQSKGnIPYFETSAKEAINVEQAFQTVAKNAL 219
                 99889999*************9879***************99**********************9876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   5.6e-35   4.4e-32       1     120 []      53     172 ..      53     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 5.6e-35
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kv+++GdsgvGKtsl++++v+++fs+++k+tig+dfltkev+ +     d+  + v++++WDtaGqerf+sl   ++r+a++++lvyd   ++s+e+l+
  CDO72399.1  53 KVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVM-V-----DD--RLVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDvnsAKSFETLD 143
                 9**************************************984.2.....23..4699*******************************7755678999* PP

                 HHHHHHHHHCS....SS.-EEEEEE-TTT CS
         Roc  97 eWlkelkkvag....ks.pvilvgnkiDl 120
                 +W +e+  +a+    ++ p++++gnkiD+
  CDO72399.1 144 SWRDEFLIQASphdpENfPFVVLGNKIDM 172
                 ***998655432222224899******96 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   6.1e-17   4.8e-14      15     173 ..      52     216 ..      39     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 6.1e-17
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 l++++lG  + GKt +++++ ++++++  + Tig  f ++e+++  + +++++wD  Gqe+  +l   +++  d  + v D++  + +e+  +  +++l
  CDO72399.1  52 LKVIILGDSGVGKTSLMNQYVNKRFSNqYKATIGadFLTKEVMVddRLVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFETLDSWRDEFL 150
                 79**********************9875789998445678898844569**************************999999988887776665555544 PP

                 ...TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 109 ...eeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                    + ++ ++ +++vl+NK+D++e+   ++++++ +++  ++k ++  +++sa +  +++++++ +++
  CDO72399.1 151 iqaSPHDPENFPFVVLGNKIDMEESK--RQVSQKRAMTWCQSKGNIPYFETSAKEAINVEQAFQTVAK 216
                 1004556679************9975..5667777777777778888999999999999999988776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     5e-10   3.9e-07       1     101 [.      53     146 ..      53     169 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 5e-10
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldee 96 
                 +v+i+G + vGK++L+n+ ++++   + k+    d  +++v +++    ++l+Dt+G  e   + ++lg af +   ad  +lv d++  +++    e+
  CDO72399.1  53 KVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVMVDDrlVTMQLWDTAG-QE---RFQSLGVAFYR--GADCCVLVYDVNsAKSF----ET 141
                 699******************98766666666666666666655535789*******.54...44489999996..56777777775521222....44 PP

                 HHHHH CS
    MMR_HSR1  97 leell 101
                 l +++
  CDO72399.1 142 LDSWR 146
                 44443 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.3e-09   1.8e-06       1     142 [.      53     190 ..      53     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.3e-09
   Gtr1_RagA   1 kvLLmGksgsGKts.mrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kv+++G sg GKts m++ + + ++ +   ++ga   +++  v   + +t++lwD  Gqe+f+   +   +     ++ vl  V Dv+s +  e+l+++
  CDO72399.1  53 KVIILGDSGVGKTSlMNQYVNKRFSNQYKATIGADFLTKEVMV-DDRLVTMQLWDTAGQERFQSLGVAFYR---GADCCVL--VYDVNSAKSFETLDSW 145
                 89************55677777777777777777666655555.46677*************988644433...3455555..5599999877888877 PP

   Gtr1_RagA  99 ke.ilealrqysp.eakvfvlihKmDliqedereeifeerkeeire 142
                 ++  l +++ ++p +  + vl +K+D+  e++r+  +++ ++  ++
  CDO72399.1 146 RDeFLIQASPHDPeNFPFVVLGNKIDME-ESKRQVSQKRAMTWCQS 190
                 6525555555555256788899****86.66666666655554444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   8.1e-08   6.3e-05      70     190 ..     100     216 ..      50     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 8.1e-08
                 EEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHH.....HHHH...TTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  70 ylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlr.....lalk...egvpiivfiNKmDrlkaelkeiveevkqklsrkeekleky 160
                  +++l Dt G + F++   + +r +D++vlv d+++     t   +r     +a+    e+ p++v+ NK+D+ +++ + +++ + +            
  CDO72399.1 100 VTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFETLDSWRdefliQASPhdpENFPFVVLGNKIDMEESKRQVSQKRAMTWC---------- 188
                 567899*****************************8866666555542222266542226677*********97777666666666333.......... PP

                 HHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 161 gekgekevpvvfgSalkgegvktllealve 190
                 + kg  ++p + +Sa+++ +v++ ++++ +
  CDO72399.1 189 QSKG--NIPYFETSAKEAINVEQAFQTVAK 216
                 3344..699999999999999988888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   7.2e-06    0.0056     102     122 ..      54      74 ..      49     114 .. 0.86
   2 ?    3.7   0.0     0.067        52      36      96 ..     147     213 ..     124     220 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.2e-06
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  ++++G SGvGK++L+n+ +++
   CDO72399.1  54 VIILGDSGVGKTSLMNQYVNK 74 
                  6899************99876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.067
                  HHHHHHHHH...TT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  36 drfLvlaee...kgiepvivlnKiDlleeee...eleelkeelealgyevllvsaktkegleelkel 96 
                  d fL++a     ++ + v++ nKiD+ e+++   + +++    ++ +++ + +sak+  ++e+  + 
   CDO72399.1 147 DEFLIQASPhdpENFPFVVLGNKIDMEESKRqvsQKRAMTWCQSKGNIPYFETSAKEAINVEQAFQT 213
                  556666654111455667777*****99999553333334444566688888998888777765555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.059        46       1      21 [.      56      76 ..      56      84 .. 0.78
   2 !   14.3   0.1   3.2e-05     0.025      70     194 ..      84     202 ..      73     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.059
  ATP_bind_1  1 vvGpaGsGKttfvgalseile 21
                ++G  G+GKt+++++ ++ + 
  CDO72399.1 56 ILGDSGVGKTSLMNQYVNKRF 76
                6899*********99776555 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.2e-05
  ATP_bind_1  70 valeflresldwldeelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnk 165
                 + ++fl++++  +d++l        l Dt GQ ++  +  +          ++a ++v + D++ +++     ++ ++ l+  s     + P+vv  nk
  CDO72399.1  84 IGADFLTKEV-MVDDRL----VTMQLWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSAKSfetLDSWRDEFLIQASPHDPENFPFVVLGNK 169
                 5567777777.666666....5789*********999998888........9**************9977666789999999***************** PP

  ATP_bind_1 166 fDllkek....lekeleffedvealslllekee 194
                 +D+ ++k    +++++ + +   ++ + +++ +
  CDO72399.1 170 IDMEESKrqvsQKRAMTWCQSKGNIPYFETSAK 202
                 ***887777766777777776666655555554 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00027      0.21       3      34 ..      53      86 ..      51      97 .. 0.76
   2 ?    5.5   0.0     0.017        13      97     140 ..     168     213 ..     154     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
   PduV-EutP  3 killiGkvgsGKttLtqalkgeel..kYkktqai 34
                k++++G +g+GKt+L+++  ++++  +Yk t   
  CDO72399.1 53 KVIILGDSGVGKTSLMNQYVNKRFsnQYKATIGA 86
                89*************9888777652257766555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.017
   PduV-EutP  97 tkidlaedeeniea..veelLksaGaekifevsavekegieellky 140
                  kid+ e++ ++++  + ++ +s G    fe+sa e +++e+ ++ 
  CDO72399.1 168 NKIDMEESKRQVSQkrAMTWCQSKGNIPYFETSAKEAINVEQAFQT 213
                 59999999999976225678999999999***********998776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05    0.0083       3      69 ..      54     133 ..      52     154 .. 0.74
   2 ?   -1.4   0.0         2   1.5e+03     144     162 ..     164     182 ..     158     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                 EEEEESTTCCHHHHHHHHHCT--SS-E.EEEESS-..SSCHCCCCCC.........HCCCT......EEEETTTTECCHCTT-H CS
        cobW   3 tvltGflGsGKTtLlnhllenraglkl.avivNef..gevsiDaell.........retgve.....ivelenGciCctlredl 69 
                 +++ G  G GKT+L+n+++++r ++++ a i  +f  +ev +D +l+         +    e      v +  G  Cc l  d+
  CDO72399.1  54 VIILGDSGVGKTSLMNQYVNKRFSNQYkATIGADFltKEVMVDDRLVtmqlwdtagQ----ErfqslGVAFYRGADCCVLVYDV 133
                 6889999************77765554388999993346999*****5555543321....25555588999999999976665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
                 EEEEE-HHHHCHC..HHHH CS
        cobW 144 llvlnKtDlldeeallekl 162
                 +++ nK+D+ ++++++++ 
  CDO72399.1 164 VVLGNKIDMEESKRQVSQK 182
                 5788999998888655543 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   8.6e-05     0.067       5      37 ..      52      84 ..      49     108 .. 0.76
   2 ?    1.3   0.0      0.22   1.7e+02     187     227 ..     146     187 ..     130     191 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.6e-05
                EEEEEEEBTTSSCCCCCCTTSSSS--------- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeeklee 37
                + +++ G+sg+Gkt+l+n  ++++  ++ k + 
  CDO72399.1 52 LKVIILGDSGVGKTSLMNQYVNKRFSNQYKATI 84
                6899****************9999888755444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.22
                 -SCCHHHHHHHHHHC-SEEB-SSSSEEEE.SSSEEEEEEETT CS
      Septin 187 edeeakelseklkeslPfaivgsneliek.kgkkvrgRkypW 227
                  de   ++s +  e++Pf ++g +  +e+ k +  + R+  W
  CDO72399.1 146 RDEFLIQASPHDPENFPFVVLGNKIDMEEsKRQVSQKRAMTW 187
                 4555566666667899********999994455557788888 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.012       5      92 ..      53     142 ..      50     186 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
                 EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq..essaalkv.ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkev 92 
                 +v+++G s  GKTsl+++  ++ + + + +   +  ++++v  +++  +++l D  G+e++++ l   +   +    lv+ v S+     +
  CDO72399.1  53 KVIILGDSGVGKTSLMNQYVNKRFSNQYKATigADFLTKEVmVDDRLVTMQLWDTAGQERFQS-LGVAFYRGADCCVLVYDVNSAKSFETL 142
                 69********************88777665545555666664677788999********9975.444445556677777777776555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05     0.015      22      51 ..      48      79 ..      38     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
      AAA_16 22 grp.elvllsGesGvGKsslvrell.ralekd 51
                gr    v++ G+sGvGK+sl+++   ++++ +
  CDO72399.1 48 GRVlLKVIILGDSGVGKTSLMNQYVnKRFSNQ 79
                55556699*************66541455544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.2e-05     0.025       9      44 ..      55     101 ..      53     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee...........erpevvf 44 
                 ++ G sG+GKT l+++++++    ++ ++            ++++v+
  CDO72399.1  55 IILGDSGVGKTSLMNQYVNKRFSNQYKATigadfltkevmVDDRLVT 101
                 799**************998644444333466665555554444455 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.1e-05     0.032      35      63 ..      53      81 ..      37      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekyl 63
                +v++ G++G+GKt++++++++k  +++y+
  CDO72399.1 53 KVIILGDSGVGKTSLMNQYVNKRFSNQYK 81
                6899**************88776666665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.1e-05     0.047       4      24 ..      53      72 ..      51     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.1e-05
      AAA_24  4 kiliyGpsgiGKTtlakelgp 24
                k++i G+sg+GKT+l++++  
  CDO72399.1 53 KVIILGDSGVGKTSLMNQY-V 72
                89***************99.3 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.5e-05     0.066       2      48 ..      54     101 ..      53     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.5e-05
                 EEEE--SSSSHHHHHHHGG.GGBS--EEEEE--TT--HHHHH--B--. CS
       AAA_5   2 vlLvGppGtgKselaerla.aalnreveyvqltrdtteedlkgrreik 48 
                 v+++G++G+gK++l+ ++  +++ +++    + +++t+e ++  r ++
  CDO72399.1  54 VIILGDSGVGKTSLMNQYVnKRFSNQYKATIGADFLTKEVMVDDRLVT 101
                 89***********99876515569999999999999999888888776 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.11      23      49 ..      54      80 ..      46      92 .. 0.85
   2 ?   -2.4   0.1       4.6   3.6e+03      73     109 ..     174     214 ..     166     226 .. 0.42

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
    ATPase_2 23 yfiYGpegsGKtaLlkeiienledkdk 49
                + i G  g+GKt+L+++ ++++ + ++
  CDO72399.1 54 VIILGDSGVGKTSLMNQYVNKRFSNQY 80
                5799****************9955444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
    ATPase_2  73 eekkklekal.........giavpkaeleeilkeksklvfkaiell 109
                 e+k++++++          +i+  ++++     ++  +v++a++ +
  CDO72399.1 174 ESKRQVSQKRamtwcqskgNIPYFETSA-----KEAINVEQAFQTV 214
                 4444444444333333322222222222.....3333444444433 PP

>> Ribonuc_red_2_N  Class II vitamin B12-dependent ribonucleotide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1    0.0002      0.16      49      88 ..     167     206 ..     132     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
  Ribonuc_red_2_N  49 eerlgsEtsakqvvdRlagtwtewgkkegyfdteedakaf 88 
                       +++  E+s +qv ++ a tw+++  +  yf+t++ + + 
       CDO72399.1 167 GNKIDMEESKRQVSQKRAMTWCQSKGNIPYFETSAKEAIN 206
                      567899**************************99877665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.14       1      57 [.      53     112 ..      53     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                 EEEEE--TTSSHHHHHHHHHHHH...GGGEE.E..EEEEEE-------EEEEEET.T--E CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkvg.G..fyteevreggrrigFkivdlasgee 57 
                 kv+i G +GvGKt l+++ +++  s+++k + G  f+t+ev  ++r +  ++ d a +e+
  CDO72399.1  53 KVIILGDSGVGKTSLMNQYVNKRFSNQYKATiGadFLTKEVMVDDRLVTMQLWDTAGQER 112
                 58999*************999998888876434459*******99999999999954444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.19       3      21 ..      54      72 ..      52      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                vi+ G++G+GKT L+ + +
  CDO72399.1 54 VIILGDSGVGKTSLMNQYV 72
                89************98766 PP

>> Glyco_hydro_75  Fungal chitosanase of glycosyl hydrolase group 75
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021      0.16      14      64 ..     126     180 ..     107     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
  Glyco_hydro_75  14 rCksspdtqpetsfkdlvksy......giedldaeehpYvVlgnegksfdpkeagve 64 
                      C    d++++ sf+ +++s+      + +  d+e++p+vVlgn+   +++++++v 
      CDO72399.1 126 CCVLVYDVNSAKSFE-TLDSWrdefliQASPHDPENFPFVVLGNKI-DMEESKRQVS 180
                     456777888899995.888897666666788999*********964.3333333333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0017       1.3       1      25 [.      54      87 ..      54     116 .. 0.65
   2 ?    0.3   0.0       1.2   9.5e+02      29      80 ..     177     230 ..     164     235 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0017
      AAA_18  1 IlltGtpGvGKttlak.eLskrlgf........g 25
                +++ G +GvGKt+l + +++kr  +         
  CDO72399.1 54 VIILGDSGVGKTSLMNqYVNKRFSNqykatigaD 87
                79***********986144555433455444433 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.2
      AAA_18  29 rdvakenglllevdpe...aldeskrldedkldklldaleenssaleegknlvid 80 
                 r+v +++ + +++ +     ++ s ++ +++ +++++++ +n+  +e+ + l++d
  CDO72399.1 177 RQVSQKRAMTWCQSKGnipYFETSAKEAINV-EQAFQTVAKNALQQEQDDQLYVD 230
                 5666777777777777775333333333333.44555555555555666777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1758.27
//
Query:       CDO72400.1  [L=736]
Description: hypothetical protein BN946_scf184977.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.8e-117  391.7   0.2     1e-116  389.8   0.2    1.9  1  Oxysterol_BP  Oxysterol-binding protein
      5e-16   58.8   0.2    1.8e-15   56.9   0.0    2.0  2  PH_8          Pleckstrin homology domain
      1e-07   32.4   0.0    2.1e-07   31.4   0.0    1.6  1  PH            PH domain


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.8   0.2  1.7e-120    1e-116       1     373 []     391     723 ..     391     723 .. 0.95

  Alignments for each domain:
  == domain 1  score: 389.8 bits;  conditional E-value: 1.7e-120
                   HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCEEE CS
  Oxysterol_BP   1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkgfr 97 
                   sl+++lkk++GkDLsk++lPv+fnepl++Lq+ ae+ley +lL++aa+++d++eR++yVaaFa+S+ya+t +r+ +K FNP+LGEtfe +r    ++
    CDO72400.1 391 SLFAVLKKNVGKDLSKVALPVTFNEPLTMLQKAAEELEYYNLLSHAAQSQDPVERICYVAAFAVSTYANTKYRTGRKGFNPMLGETFEEIR----MH 483
                   6899********************************************999***************************************9....78 PP

                   EEEEEEETTTTEEEEEEEECTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEEEEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEEETTT--EEEE CS
  Oxysterol_BP  98 fiaEQVsHhPpvsAfhaesegweldgeikvkskflgkslevkpeGtahlellkksgehYtwtkpttivhniivgklwvelsgeveitnhstgdkakl 194
                   f+aE+V+H+P + A+hae egwel+++++ k+kf+gks+e++p+Gt+hl+l    +eh++w++p+++++n+++g++++e++g++ i+n+s gd+++l
    CDO72400.1 484 FLAEKVCHNPVILAWHAEGEGWELYATSSGKTKFWGKSMEIIPQGTIHLKL---GEEHFQWNRPSSFIRNLMMGTKYLEHVGKMVIKNTSRGDSCTL 577
                   9**************************************************...48***************************************** PP

                   EEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT-BSXXGCGSSTTBCCCCCCH---.--...GGG--HHHHC CS
  Oxysterol_BP 195 eFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedasekskvkekeeqeefeseklWkaspl.pkaeeyygftkfavt 290
                   +Fk+ g+++    n v+g+v ++++e l++++Gkwde++  k                          +++ + lW+ +p  ++a +yygft f +t
    CDO72400.1 578 DFKEGGYWG--PTNVVSGTVSSSSGEALANLEGKWDEQMARKLD------------------------SSHLHILWRITPFpKNAMQYYGFTAFGIT 648
                   ********7..89*************************999433........................346789*******555555********** PP

                   CT---.TT.GGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT----SSEEEEETTTTSSCEEEC-S-HHH CS
  Oxysterol_BP 291 lNeieeke.kslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekkewkpkwFekekdpdtgeevwkykgeywe 373
                   lNei+++   +l+ptDsR+RpD rale+gd+++Ae+eK+r+E+ QRerr++   + e  p+wF+++ d+      w+ykg+ywe
    CDO72400.1 649 LNEITPDLeGKLPPTDSRYRPDVRALENGDLETAEREKQRVEDLQRERRAQG--R-ECSPRWFKQVGDE------WIYKGGYWE 723
                   ******8789**************************************9974..3.579*****99994......********7 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   3.1e-19   1.8e-15       1      88 [.      41     126 ..      41     127 .. 0.93
   2 ?   -1.7   0.2      0.62   3.7e+03      66      86 ..     503     523 ..     497     525 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.1e-19
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplslaiisaneekreiiidsGaevWeLkasnekdfqeWvealeka 88 
                 g++lkkrrk++qg+a+R+F+L ++s+ l Y   + ++  r ++ l++a+is+   +++i +ds    +++k  +++df++W+ a+ k+
  CDO72400.1  41 GWVLKKRRKRMQGFARRYFTL-YSSGLLCYSF-EPGQPPRDQVLLTQAAISTAPGRKDIHVDSQHATFHIKCLSQEDFDKWMVAFRKI 126
                 899******************.7777777665.668899**********************************************986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.62
        PH_8  66 evWeLkasnekdfqeWveale 86 
                 e WeL a+++ + + W +++e
  CDO72400.1 503 EGWELYATSSGKTKFWGKSME 523
                 67**************98876 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   3.5e-11   2.1e-07       1     104 [.      37     127 ..      37     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.5e-11
                 EEEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHH CS
          PH   1 vvkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWika 99 
                 v++eGw+lkk+ ++  ++ +r+f+L +s ll y+ +   +   p+  + l+++ ++      +++ +  + +    +++  t+++++ s+e+  +W+ a
  CDO72400.1  37 VIHEGWVLKKRRKRMQGFARRYFTLYSSGLLCYSFE---PGQPPRDQVLLTQAAIS------TAPGRKDIHV---DSQH-ATFHIKCLSQEDFDKWMVA 122
                 689***9999999888********************...****************9......4555555555...2356.9****************** PP

                 HHHHH CS
          PH 100 iqsai 104
                 +++++
  CDO72400.1 123 FRKIL 127
                 *9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4953.29
//
Query:       CDO72401.1  [L=656]
Description: Glycoside Hydrolase Family 3 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-49  168.9   0.2    3.4e-49  167.6   0.1    1.8  2  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    3.1e-22   79.4   0.1    1.9e-15   57.1   0.1    3.1  2  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    3.3e-18   65.6   0.0    8.3e-18   64.3   0.0    1.7  1  Fn3-like         Fibronectin type III-like domain
  ------ inclusion threshold ------
       0.23   11.6   0.1       0.38   11.0   0.1    1.2  1  DARPP-32         Protein phosphatase inhibitor 1/DARPP-32
        2.6    8.4   6.6        1.2    9.5   2.7    2.6  2  DUF11            Domain of unknown function DUF11


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   3.7e+03     113     149 ..     202     237 ..     185     242 .. 0.76
   2 !  167.6   0.1   9.5e-53   3.4e-49       2     204 .]     273     523 ..     272     523 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
                      SSEEEEEEESSGG--TTTGTTTEEEEEE-S.--GCCHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Glyco_hydro_3_C 113 knvvvvlqsggpvavepwkeenvkAilaaw.lpGqegG 149
                      +n v  +qsg++ +  ++ ++ ++ ilaaw l Gq++G
       CDO72401.1 202 QNLVNAVQSGQVPEA-RI-DDLATRILAAWyLLGQDSG 237
                      566666777777766.56.6688999999944688887 PP

  == domain 2  score: 167.6 bits;  conditional E-value: 9.5e-53
                      EEEEEGSS--S-S-STEEEEEESGGGS................SS-SS-BSSS----S---HHHHHHHHHHH............-HHHHHHHHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxx RF
  Glyco_hydro_3_C   2 VLLkNennlLPLkkklkkiaviGpnad................etlklGggsgtvtvsylvsplegirerles..........eegideaveaa 69 
                      +LLkN n++LPL k  k+iav+G+ a+                + l +G+gsgt  ++yl+ p+++i++r+++          +++ + a++aa
       CDO72401.1 273 ILLKNVNKALPL-KAPKSIAVVGNGATnsskgpngyedrsgddGVLGMGWGSGTDDYPYLIAPVDAITARAKNdgttvttslsDTDLSGAANAA 365
                      8***********.7778*********9********************************************99**********99********* PP

                      HHTSEEEEEEEES...SB-TT........SCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHHHHHH CS
                      xxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  70 keaDvavvvvgedpeiegEgv........Drtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpGqegGtaiad 154
                      + +Dva v++ +d   +gEg+        Dr+dl+  ++ d l+++va++nkn++vv++s gp+ ve+w +++nv+A++++ lpGqe+G++++d
       CDO72401.1 366 RGKDVAFVFITAD---SGEGYltvennagDRNDLNAWHSGDVLVQQVASVNKNTIVVVNSVGPIIVEKWiDHPNVTALVWSGLPGQEAGNGLVD 456
                      *************...8888888888899*****************************************999********************* PP

                      HHTTSS---B--SS-EESSSGGG........................S.-----S...ETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..xx..........xx.xxxxxx...xxxxxxxxx RF
  Glyco_hydro_3_C 155 vLfGdvnPsGkLpvtfpksledlpd.dyyeek..dt..........yk.fegtpl...YpeGlglsY 204
                      vL+ ++nP+G+Lp+t+ ks +d+     y+ +   +          y+ f+ + +   +++G+glsY
       CDO72401.1 457 VLYDAYNPGGRLPFTIGKSITDYSAqVLYSGSgiVQipyneglfidYRhFDAAGIsprFEFGFGLSY 523
                      ***********************55333333334114555666666554444444566888888887 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   5.2e-19   1.9e-15      84     251 ..      14     179 ..       5     179 .. 0.91
   2 !   17.1   0.0   7.6e-07    0.0027     274     318 ..     178     227 ..     177     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.2e-19
                    SS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT- CS
  Glyco_hydro_3  84 eg.tlfPsalalaatssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdg 178
                    +    fP ++  aat++++l++e g ++++e    g+++ ++P++               + dp+l + la ++++G+q+agv a++KH++    +
     CDO72401.1  14 DLvSAFPPEINVAATFNRTLMRERGAAMGAEFKGKGVHVALGPMIG--------------GGDPFLSGELAFETITGIQSAGVQACAKHYIN---N 92 
                    45578***************************************84..............78*****************************9...5 PP

                    SSETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---..............BGGG-HHHHIIIIIIIS---SEE CS
  Glyco_hydro_3 179 avdshkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgt..............patgskklltdvLRkelGFdGvv 251
                    +++  ++   ++ + +  +e + +pf   ++a+v sVM +  q  +l+++                  + + l ++L+ e GF+G v
     CDO72401.1  93 EQEHFRDSSSSNVDDRTEHELYSYPFMRSVQANVASVMCSYNQSRSLEDHdtwtvsdeyqvngtYSCENDQTLNGILKGEFGFQGSV 179
                    99999999999999999***********************88888888889*********99985555666777***********76 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 7.6e-07
                    HHHHT-SBEES-S---SG.....HHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 274 aLkAGvDilLvpeertse.....ikalkkavkeGeltearidesvrrvlr 318
                    +++AG+D+ +  ++          ++l++av++G+++earid+ ++r+l 
     CDO72401.1 178 SVNAGLDMTMPGDTTLGSgqtyfGQNLVNAVQSGQVPEARIDDLATRILA 227
                    699*******99887655788889************************85 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.3e-21   8.3e-18       1      71 []     576     645 ..     576     645 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.3e-21
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 ev qlY+s+p s ++  +  LkgF+ v+L pGes+tvt+tl r d+svwd+ +++w + +G   + vg+ss
  CDO72401.1 576 EVPQLYTSPPAS-ANSAPFNLKGFDSVFLGPGESTTVTMTLARIDFSVWDVPSHSWQIAKGVTGISVGASS 645
                 8**********9.99******************************************************98 PP

>> DARPP-32  Protein phosphatase inhibitor 1/DARPP-32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00011      0.38      65     110 ..     106     151 ..      88     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
    DARPP-32  65 pkrrnpcvytpPslkavQrlaeahlqklgaeenledspdgqeeede 110
                   r+++  y  P ++ vQ  + + +++ +++ +led++  + +++ 
  CDO72401.1 106 DDRTEHELYSYPFMRSVQANVASVMCSYNQSRSLEDHDTWTVSDEY 151
                 56889999****************************9974433333 PP

>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   8.6e+03      20      27 ..     384     391 ..     342     418 .. 0.66
   2 ?    9.5   2.7   0.00034       1.2      15      76 ..     559     615 ..     540     618 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
       DUF11  20 ltvtNtgp 27 
                 ltv N+ +
  CDO72401.1 384 LTVENNAG 391
                 44444444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00034
       DUF11  15 tvtytltvtNtgpasangv.vvtDtlPaglayvsvsasqgtasaltsvgsLeagesatlsftv 76 
                  vt+t t+tN+g+++ ++v ++   +Pa+ +  ++  + g       +  L +ges+t+++t+
  CDO72401.1 559 VVTVTFTLTNNGTVAGTEVpQLYTSPPASANSAPFNLK-GFD-----SVFLGPGESTTVTMTL 615
                 69*************98885677777888888888888.222.....2457899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4434.72
//
Query:       CDO72402.1  [L=278]
Description: hypothetical protein BN946_scf184977.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2098.79
//
Query:       CDO72403.1  [L=187]
Description: hypothetical protein BN946_scf184977.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      113  (0.00630264); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1521.99
//
Query:       CDO72404.1  [L=382]
Description: hypothetical protein BN946_scf184977.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-40  137.4   0.0    1.9e-13   50.0   0.0    3.2  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    2.6e-06   27.0   0.0     0.0018   17.8   0.0    2.4  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    6.9e-05   22.6   0.0    0.00069   19.4   0.0    2.2  2  RRM_occluded  Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.058   13.5   0.0       0.23   11.6   0.0    2.0  1  RRM_7         RNA recognition motif
      0.087   12.8   0.0        2.1    8.4   0.0    2.4  2  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.9e-13     7e-10      15      70 .]       2      59 ..       1      59 [. 0.94
   2 !   45.4   0.0   1.5e-15   5.3e-12       1      51 [.      79     130 ..      79     133 .. 0.97
   3 !   50.0   0.0   5.3e-17   1.9e-13       1      70 []     185     249 ..     185     249 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.9e-13
                HHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1 15 LkelFskfGpiksiklvrd..etgkskgfafVeFeskedAekAlealngkklggrelk 70
                L e+F   Gp++++k+++d   ++   +++fVe+ + ++Ae Al++lng+k+ ++e++
  CDO72404.1  2 LTEIFAVAGPVQHVKIIPDrnYQHGGLNYGFVEYMDMRAAETALQTLNGRKIFDTEIR 59
                789****************988888899*************************99986 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 1.5e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFesked 51 
                 +fVg+L+p+v++e L + Fs fG  ++++++ d + gks+g++f  F +k d
  CDO72404.1  79 VFVGDLSPEVNDEVLAKAFSAFGTLSDARVMWDmNSGKSRGYGFLAFRDKTD 130
                 8************************************************987 PP

  == domain 3  score: 50.0 bits;  conditional E-value: 5.3e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++VgnL p++t+ +L  lF+ +G  ++i++  d     +gfafV+ +++e A+ A+ +l+g+ ++gr++k
  CDO72404.1 185 VYVGNLVPYATQADLIPLFQSIGYLSEIRMQAD-----RGFAFVKLDTHEHAAMAIVQLQGQLVHGRPIK 249
                 8********************************.....*****************************996 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.1e-07    0.0018      45     103 ..       3      67 ..       1      79 [. 0.82
   2 !    6.8   0.0    0.0014       4.9      26     101 ..     182     255 ..     160     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.1e-07
       RRM_5  45 FnlfclYgnvervkflktkk......etalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                   +f++ g v++vk++  ++      ++ +v+  d +a+e+a+q Ln+ k+f+++++v    q +
  CDO72404.1   3 TEIFAVAGPVQHVKIIPDRNyqhgglNYGFVEYMDMRAAETALQTLNGRKIFDTEIRVNWAYQGQ 67 
                 568999999******977653344446889************************99998876654 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0014
       RRM_5  26 gsVllVyglepdkvnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                 ++ + V +l p    +  l  lf   g ++ ++ ++  ++ a+v++    ++  a+  L+++ ++g++++    K 
  CDO72404.1 182 NTTVYVGNLVPYATQA-DLIPLFQSIGYLSEIR-MQADRGFAFVKLDTHEHAAMAIVQLQGQLVHGRPIKCSWGKD 255
                 5566666666655444.4667777778888887.78999******************************9988776 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.17   6.2e+02      42      70 ..      32      60 ..       2      62 .. 0.73
   2 !   19.4   0.0   1.9e-07   0.00069      20      71 ..     201     251 ..     183     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.17
  RRM_occluded 42 ivefkdekiagkasLaLdgsefegkklrc 70
                  +ve+ d ++a  a+  L+g ++ + ++r+
    CDO72404.1 32 FVEYMDMRAAETALQTLNGRKIFDTEIRV 60
                  68999988888888899999998888876 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.9e-07
  RRM_occluded  20 alveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrcG 71 
                    l+++  g + +i +++d + A+v+++ +++a+ a+ +L+g+  +g+ ++c+
    CDO72404.1 201 PLFQSI-GYLSEIRMQADRGFAFVKLDTHEHAAMAIVQLQGQLVHGRPIKCS 251
                   577777.999*****************************************7 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.5e-05      0.23       3      59 ..      78     127 ..      76     132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.5e-05
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfed 59 
                  vFvG l +++++e l ++f++fg+++      a+    ++  s   +gy fl f d
  CDO72404.1  78 HVFVGDLSPEVNDEVLAKAFSAFGTLS-----DARVMWDMN--SGKSRGYGFLAFRD 127
                 69**********************975.....222222222..22235777777665 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00059       2.1      33      53 .]      19      45 ..       4      45 .. 0.74
   2 ?    1.8   0.0     0.068   2.4e+02      17      52 ..     199     234 ..     191     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00059
  Nup35_RRM_2 33 p......kevsvmyvkfesekdaekAL 53
                 p      ++ ++ +v++++ ++ae+AL
   CDO72404.1 19 PdrnyqhGGLNYGFVEYMDMRAAETAL 45
                 34445467889***************8 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.068
  Nup35_RRM_2  17 VlehFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                   ++ F+s+G   ++ +   + +++vk  +   a++A
   CDO72404.1 199 LIPLFQSIGYLSEIRMQADRGFAFVKLDTHEHAAMA 234
                  55669************999******9999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2854.19
//
Query:       CDO72405.1  [L=279]
Description: hypothetical protein BN946_scf184977.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-24   85.4   3.3    1.2e-23   84.1   3.3    1.6  1  Band_7         SPFH domain / Band 7 family
    6.5e-06   25.4   2.7    9.2e-06   24.9   2.7    1.2  1  YdfA_immunity  SigmaW regulon antibacterial
  ------ inclusion threshold ------
       0.17   12.7   0.1        0.3   11.9   0.1    1.4  1  DUF4587        Domain of unknown function (DUF4587)


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   3.3     2e-27   1.2e-23       2     176 ..      27     214 ..      26     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 2e-27
      Band_7   2 iieegevgvvvr..fGklsrvlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrv.pddapklvaaveresanldnlirrvl 97 
                  ++ g+++v++    G  +r  + G+hf +P++++ ++++ r+   ++s   t+ +kD ++v i+ +v  r   ++ + +++++  + ++ ++++ ++ 
  CDO72405.1  27 DVPGGYRAVMFDrfSGVRERASPEGTHFLVPWLQKAILYDCRIKPRNIST--TTGSKDLQMVSITLRVLSRPdIEHLSNIYKTL--GLDYDERVLPSIG 121
                 5899******6654444444999***************************..****************9998879999999999..999999999999* PP

      Band_7  98 esalrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaea..............qaeiaraea 176
                 +++l++++++++++el+  re + ++++++l +++ ++++ ++dv+it++++ +e+ qa++akq a+++a              qa++ rae+
  CDO72405.1 122 NEVLKSIVAQFDAAELITQREVVSSRIREDLLQRAGEFNIILEDVSITHLTFGKEFTQAVEAKQIAQQDAerakfivekaeqerQAAVIRAEG 214
                 **********************************************************************99988776555555555555555 PP

>> YdfA_immunity  SigmaW regulon antibacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   2.7   1.5e-09   9.2e-06     138     283 ..      87     229 ..      64     248 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.5e-09
  YdfA_immunity 138 Giqlkvkar..vtvranierlvGgageetiiarvGegivttiGsaeshkevlenPdsisktvlekgldagtafeilsidiadvdvgenigaklqad 231
                     i l+v +r  +   +ni + +G   +e ++  +G+ ++++i +  +  e++ + + +s ++ e  l+ +  f+i+     dv++++      +  
     CDO72405.1  87 SITLRVLSRpdIEHLSNIYKTLGLDYDERVLPSIGNEVLKSIVAQFDAAELITQREVVSSRIREDLLQRAGEFNIIL---EDVSITHL-TFGKEFT 178
                    455555444225556899********************************************************985...45555543.2333567 PP

  YdfA_immunity 232 qaeadkkiaqakaeerramavakeqemkakvqemrakvveaeaevPkalaea 283
                    qa   k+iaq  ae+ + +   +eqe +a v +++ +  ea a + kal +a
     CDO72405.1 179 QAVEAKQIAQQDAERAKFIVEKAEQERQAAVIRAEGE-AEAAATISKALDRA 229
                    8888899999999999999999999999988776655.36666666666544 PP

>> DUF4587  Domain of unknown function (DUF4587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.1e-05       0.3       4      74 ..     147     209 ..     144     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.1e-05
     DUF4587   4 sikeDlvelmllQnAQmhQilmqnlmlkaLppsalspsqpaqkqvllelqqeepeeapvveeaekekppsv 74 
                 +i+eD     llQ A  + i+++ + + +L    + +++ ++kq+   +qq++++++ +ve+ae+e++ +v
  CDO72405.1 147 RIRED-----LLQRAGEFNIILEDVSITHLTFGKEFTQAVEAKQI---AQQDAERAKFIVEKAEQERQAAV 209
                 66666.....58*******************99988877455554...5999999999*******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2053.82
//
Query:       CDO72406.1  [L=618]
Description: hypothetical protein BN946_scf184977.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.2    7.4   8.1         12    6.2   0.1    3.3  3  PRODH     Proline utilization A proline dehydrogenase N-termi


Domain annotation for each model (and alignments):
>> PRODH  Proline utilization A proline dehydrogenase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.33   5.9e+03      14      32 ..      43      61 ..      43      74 .. 0.72
   2 ?    6.2   0.1   0.00069        12      19      45 ..     196     222 ..     195     224 .. 0.90
   3 ?    4.8   0.3    0.0019        33      29      47 ..     329     347 ..     323     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.33
       PRODH 14 pEaecVapLleaArlpeae 32
                +E+  +++L  +  l++++
  CDO72406.1 43 DEEATLEDLQRQQGLDDDD 61
                6777777777777777765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00069
       PRODH  19 VapLleaArlpeaeraairalArkLve 45 
                 ++pLl  A+ p +  aa++a+A++  +
  CDO72406.1 196 LPPLLSLATHPTSSPAAVHAHAHDATT 222
                 79********************98766 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0019
       PRODH  29 peaeraairalArkLveal 47 
                 + a+r++ir+ A++Lv ++
  CDO72406.1 329 DSAMRSRIRTAAAQLVPQV 347
                 4799************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4148.29
//
Query:       CDO72407.1  [L=724]
Description: hypothetical protein BN946_scf184977.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-52  176.5   7.3    7.6e-26   91.1   4.9    3.3  2  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   1.2e-26   2.2e-22       3     101 ..     116     227 ..     114     242 .. 0.84
   2 !   91.1   4.9   4.2e-30   7.6e-26     214     324 .]     244     334 ..     240     334 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 1.2e-26
     Plavaka   3 nakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereyt...........de.kkg.ervyse 88 
                 ++++L++tiDs+p  ++ew+  e++++g+ ++e+++ m+e++++w+rdp++vi++l+gnpdf++++dyaP +e+            ++ +++ +r+++e
  CDO72407.1 116 SKQTLYETIDSIPGPSAEWTLIEITIQGTERDEHGNLMTETVDVWVRDPVAVIRDLIGNPDFDGDIDYAPVQEFLteiaqelseaaEQgQSEvDRILTE 214
                 7899************************999***************************************887765555555543322223357***** PP

     Plavaka  89 mmtgdwaweqqie 101
                 m+t++w+ ++q +
  CDO72407.1 215 MNTAEWWPRIQAS 227
                 **********933 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 4.2e-30
     Plavaka 214 vipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglkgviepFwedlpradihelltpDlLHqli 312
                  +pilaay aDypEq+lv+c ++++Cp+                 + ++tl++l++ +   ++l+ + gl++v +pFw+dlp+++i++++ pDlLHql+
  CDO72407.1 244 FFPILAAYLADYPEQCLVCCNKENRCPT-----------------DPATTLAVLQDPH---SELFARLGLRDVPDPFWADLPYTNIFNCIVPDLLHQLH 322
                 69*************************5.................2456788888884...69************************************ PP

     Plavaka 313 kgvfkdHlvkWv 324
                 kgvf  Hlv+Wv
  CDO72407.1 323 KGVFMTHLVSWV 334
                 ***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4649.80
//
Query:       CDO72408.1  [L=388]
Description: hypothetical protein BN946_scf184977.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-18   66.7   0.1    3.6e-09   36.7   0.0    2.8  2  Asn_synthase  Asparagine synthase
  ------ inclusion threshold ------
      0.085   12.3   0.0       0.15   11.6   0.0    1.5  1  QueC          Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     4e-13   3.6e-09      16     144 ..     129     316 ..     124     325 .. 0.90
   2 !   27.1   0.0   3.4e-10   3.1e-06     202     264 ..     318     380 ..     315     387 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 4e-13
  Asn_synthase  16 advpvGalLSGGlDSSliaalaarqsk.........................................splktFsigf...ee.kgsdeakyakeva 67 
                   ++ +v++++SGG+DS+++a+la+r+ +                                          +  t+++ +   +   g +e++  k+++
    CDO72408.1 129 GQARVAVFFSGGIDSTMLAFLADRHVDptepidllnvafenprkiavkatgnigglpkrekkqklrdpLDYSTVTVSYdvpDRlTGLQEVEELKRLC 225
                   5789**************************************************************9877888888885542289************ PP

  Asn_synthase  68 ehlgte..htelvlteeelldalpdviyhleepfadrsaiplyllsrlakrkgvk.............vvLsGeGaDElfgGYpyfykaals 144
                      +++   +++ ++ + + +++++++    +++  + ai+ly+++r + +  +              v+L G G+DEl gGY  +++ a +
    CDO72408.1 226 PNRKWNflEVNVPFKSQNARATVEALMFPSRTVMDLSLAIALYFAARGIGQVRSHpgaeplpytsparVLLNGLGSDELLGGYG-RHRTAFK 316
                   99999988899999**************99999999*************5444447789999999999****************.9998754 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 3.4e-10
  Asn_synthase 202 egedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrggie 264
                   +g++++ +el+l++ ++ + +l r Dr   ++g E+R+Pfl   +v++ ++lp++lk++++ e
    CDO72408.1 318 AGWQAVIEELQLEIDRIPTRNLGRDDRVISSWGKETRHPFLSLSVVNFLAQLPVHLKMDPRLE 380
                   67899999**************************************************98765 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.6e-05      0.15       3      27 ..     134     158 ..     132     253 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
                 EEE--SSHHHHHHHHHHHHH-SEEE CS
        QueC   3 vvllSGGlDSttvlalakkegkeve 27 
                  v +SGG+DSt++++la ++++  e
  CDO72408.1 134 AVFFSGGIDSTMLAFLADRHVDPTE 158
                 589**************99986443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2672.83
//
Query:       CDO72409.1  [L=1202]
Description: hypothetical protein BN946_scf184977.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-25   88.2   0.0    3.9e-25   88.2   0.0    3.0  3  HA2          Helicase associated domain (HA2)
    1.3e-20   73.5   0.0    3.2e-20   72.3   0.0    1.7  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    7.4e-10   39.1   0.4    1.2e-08   35.3   0.0    2.8  3  Helicase_C   Helicase conserved C-terminal domain
    8.7e-08   32.1   0.0    1.9e-07   31.0   0.0    1.5  1  DEAD         DEAD/DEAH box helicase
    1.7e-06   28.4   0.8    5.3e-05   23.5   0.0    3.1  3  AAA_22       AAA domain
     0.0041   17.1   0.0      0.057   13.4   0.0    2.5  2  ResIII       Type III restriction enzyme, res subunit
     0.0074   15.6   0.0      0.015   14.6   0.0    1.5  1  DUF2075      Uncharacterized conserved protein (DUF2075)
     0.0078   16.6   0.0      0.028   14.8   0.0    1.9  2  AAA_19       AAA domain
     0.0085   15.8   0.0      0.022   14.5   0.0    1.7  1  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.013   14.8   0.0       0.03   13.7   0.0    1.5  1  ATPase       KaiC
       0.27   11.7  14.1       0.73   10.3   1.2    2.8  2  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.8       1.9   3.2e+03      64      86 ..      40      74 ..      14     104 .. 0.60
   2 ?   -3.1   0.5       5.7   9.4e+03      77      79 ..     248     261 ..     215     280 .. 0.49
   3 !   88.2   0.0   2.4e-28   3.9e-25       1     106 [.     875    1004 ..     875    1006 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.9
         HA2 64 fleeneeekeeeee...........e.eekakkkr 86
                +++++eeeke+e++           + ++++kkk+
  CDO72409.1 40 IVPKSEEEKEKERRlkmreemlaqlDsKANSKKKK 74
                44444444444444655554444331222222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.7
         HA2  77 e....e.......e 79 
                 e    +       +
  CDO72409.1 248 EssaeDepeqpaeD 261
                 12111112112111 PP

  == domain 3  score: 88.2 bits;  conditional E-value: 2.4e-28
         HA2    1 AlelLvalgAL.......deegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee............. 77  
                  A++ L++lgAL       +  g++T++Gr m+ +Plspr+++mL+ +  +++gcl++vitiv+alsv+++f++e++ + +++e+             
  CDO72409.1  875 AEKVLTHLGALaptksgaTLGGSITDIGRMMSLFPLSPRFSRMLVSG--RQHGCLPYVITIVSALSVGDPFVREESLDLDKDESdtedeeegmqhlt 969 
                  89*********888877655688************************..778***********************9998887777877777666555 PP

         HA2   78 e.....eekakkkrkeeekarrklahkda.egDhl 106 
                  +     +e ++ +rk++ ++++ +a  ++ ++D+l
  CDO72409.1  970 SeavraKEVRRVRRKAFFQSQALHAALGNsSSDVL 1004
                  15566677777788888887777777777889987 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0     2e-23   3.2e-20       1      82 [.    1073    1166 ..    1073    1167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2e-23
                   HHHHHHHHHTTCEEEEEE.............TTCC....EEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHH CS
  OB_NTP_bind    1 lraillaGlypqiarkdp.............skkd....yktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllf 79  
                   lr++++aG+++q+a +++             +  +    y+ + +++ vfihpsSvla+   + +p++vv+ e v+t+++y++++t i+ awL  +
   CDO72409.1 1073 LRQLIAAGFIDQVAVRKDiaqkgigsgtqytT--SrgvaYQALGIDEDVFIHPSSVLAN---QRPPDYVVFLEVVRTSRVYIKGVTTINGAWLPAL 1163
                   79************999988888874443332..03355666656*************8...59******************************99 PP

                   STT CS
  OB_NTP_bind   80 agq 82  
                   +++
   CDO72409.1 1164 GKS 1166
                   976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.71   1.2e+03      44      64 ..      78      98 ..      47     113 .. 0.76
   2 ?   -2.8   0.0       4.9     8e+03      12      35 ..     602     626 ..     593     650 .. 0.64
   3 !   35.3   0.0   7.1e-12   1.2e-08      41     111 .]     725     813 ..     704     813 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.71
                EEESTTSTHHHHHHHHHHHHT CS
  Helicase_C 44 avlhgelpqnereeileqfnk 64
                 ++  +l+q+er+e +e+  k
  CDO72409.1 78 KYIEKKLKQEERLELFEKLSK 98
                4678899********999865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.9
                 HTTTTSEEEEEESSHHHHHH.HHHH CS
  Helicase_C  12 leeeggkilifvntidrlek.vkll 35 
                  +   g ilif++ ++++   ++ l
  CDO72409.1 602 ARLPPGGILIFLTGQNEITGvCRKL 626
                 4557888999999999774344444 PP

  == domain 3  score: 35.3 bits;  conditional E-value: 7.1e-12
                 STEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH..................HHHHHHHTTSSSTT CS
  Helicase_C  41 ikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv..................tsyiqriGRtgRag 111
                 +++++l++ l+++++ ++++    g + v++at+vae++++ip++++V++++  ++                   +s+ qr+GR+gR g
  CDO72409.1 725 MHIVPLYALLSSEKQMQVFKPPPPGMRLVVVATNVAETSLTIPGIRYVVDCGRAKERrydvtngiqafqvswiskASAAQRAGRAGRTG 813
                 6788999999************9***99**************************7755577899999999*****************86 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.2e-10   1.9e-07       7     171 ..     388     552 ..     384     556 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.2e-10
                 HHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEE.EEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   7 aiplilgggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkal.ivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 ++++il +  v++++eTGsGKT+     +++          g+++p ++ +  P r  a  +++++   ++ ++ rv+  i       + ++   ++ i
  CDO72409.1 388 IMEAILLNSVVIICGETGSGKTTQVPQFLYE----AgfgsPGSDNPGMIgVTQPRRVAAMSMASRVAHELSLTSSRVSYQIR-----YDATVS-PSTSI 476
                 567888899*************985555555....455556665555553788*************9999976666653333.....333344.66999 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSE...EEEEESSBS.H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx.x RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrq...vivlSATlp.k 171
                  ++t g l++ l    + l++ +++++DEa++ + +       ++r+++  +++ +dgk+  +   +i++SATl   
  CDO72409.1 477 KFMTDGVLLRELA-TDFLLKKYSVIIIDEAHERSMNtdILIGVLSRVVKLREEMWKDGKEGIKplrLIIMSATLRvA 552
                 **********885.4557*************98777444445555555555555666663333355*******9755 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4      0.25   4.1e+02      35      90 ..      29      88 ..      14      99 .. 0.64
   2 !   23.5   0.0   3.2e-08   5.3e-05       6     102 ..     396     507 ..     394     531 .. 0.82
   3 ?   -3.0   0.0         5   8.1e+03      39      72 ..     605     638 ..     592     657 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.25
      AAA_22 35 aee.erpevvfvtlpsst......sskdllrellralglelkaerlsseellealeqalrara 90
                a   ++++ + + +p+s+       + ++++e+l +l++++++  +++++l +++e+ l++  
  CDO72409.1 29 A-PdHPDPNAPIIVPKSEeekekeRRLKMREEMLAQLDSKANS--KKKKRLDKYIEKKLKQEE 88
                3.2434444433333333343424566679999*****99999..999999999999988765 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 3.2e-08
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelka..................erlsseellea 81 
                 ++++++Ge+G+GKTt + ++l+++              +p+ + vt p      +++++++++l l  ++                     +   l+e+
  CDO72409.1 396 SVVIICGETGSGKTTQVPQFLYEAG------FgspgsDNPGMIGVTQPRRVAAMSMASRVAHELSLTSSRvsyqirydatvspstsikFMTDGVLLREL 488
                 5789*******************83......13346899**************************9998899******999977777433444444477 PP

      AAA_22  82 leqalraravielliiDEaqh 102
                  ++ l +++   ++iiDEa+ 
  CDO72409.1 489 ATDFLLKKYS--VIIIDEAHE 507
                 7777777777..*******97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelkaer 72 
                 +p+ +++ l+++++ + ++r+l   +g+++ +er
  CDO72409.1 605 PPGGILIFLTGQNEITGVCRKLEARYGQKALEER 638
                 5556677778888888888888888888777722 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.36   5.9e+02      28      39 ..     399     410 ..     390     419 .. 0.81
   2 !   13.4   0.0   3.5e-05     0.057     122     170 ..     486     550 ..     451     551 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.36
                 EEEESTTSTHHH CS
      ResIII  28 likmaTGtGKTl 39 
                 +i  +TG+GKT 
  CDO72409.1 399 IICGETGSGKTT 410
                 67789******7 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.5e-05
                 .....HHHTTT-SEEEEETGGGTTS.............T....TTHHHHHT---SEEEEEESS-S CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak............k....swreilekfkeavllglTATpe 170
                 +e  +++l +++ viiiDEaH  + +            k     w+  +e +k+  l+ ++AT++
  CDO72409.1 486 RELATDFLLKKYSVIIIDEAHERSMNtdiligvlsrvvKlreeMWKDGKEGIKPLRLIIMSATLR 550
                 4557888999999********999986666666555551555699999***************75 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.1e-06     0.015       2      98 ..     396     506 ..     395     516 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.1e-06
     DUF2075   2 avvlVtGvaGtGKtvvllnllael............eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekke 85 
                 +vv++ G++G+GKt    ++l+e+                + r+++ +s   +  + l  + ++ +  + + +a   +s+ i+ ++ +   ++ + +  
  CDO72409.1 396 SVVIICGETGSGKTTQVPQFLYEAgfgspgsdnpgmIGVTQPRRVAAMSMASRVAHELSLTSSRVS-YQIRYDATVSPSTSIKFMTDGvllRELATDFL 493
                 699*********************998887666655444466666666666666655555444444.6667777778899999999889*9999***** PP

     DUF2075  86 epkedvvivDEAh 98 
                  +k  v+i+DEAh
  CDO72409.1 494 LKKYSVIIIDEAH 506
                 ************* PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.1   5.1e+03      63      78 ..     115     138 ..      82     203 .. 0.57
   2 !   14.8   0.0   1.7e-05     0.028       8     115 ..     393     509 ..     386     529 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.1
      AAA_19  63 aalgaeatTiHrlal........l 78 
                  + g++ t +Hrl           
  CDO72409.1 115 LGTGKPSTHLHRLEKeedlevkrA 138
                 334444444555522333333330 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.7e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhival..lvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.............ldfddlltealell 91 
                 l ++v+++ +  G+GKT+ + + + +  + + g+ +p  i +  + + Aa+ ++ r+  + +   T  r++              +             
  CDO72409.1 393 LLNSVVIICGETGSGKTTQVPQFLYEagFGSPGSDNPGMIGVTQPRRVAAMSMASRV--AHELSLTSSRVSYqirydatvspstsI------------- 476
                 67899**************99988551156777788888888888888999999988..333345555554454433332222222............. PP

      AAA_19  92 e.........eaeeekklqeee.llivDEfqdvd 115
                 +         e +++ +l +++ ++i+DE+ + +
  CDO72409.1 477 KfmtdgvllrELATD-FLLKKYsVIIIDEAHERS 509
                 222244444355555.5557777******97654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.022       9      98 ..     388     506 ..     382     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkal.reaweaa.g...............grviglAptgkaAkvLa.................eelgieasti 73 
                 ++ea+l ++  v+++ G  G+GKtt + +      ea  g               +rv++++  +++A++L+                  ++ i+ +t 
  CDO72409.1 388 IMEAILLNS--VVIICGETGSGKTTQVPQFlY---EAGfGspgsdnpgmigvtqpRRVAAMSMASRVAHELSltssrvsyqirydatvsPSTSIKFMTD 481
                 566777777..9*************8876633...33333556***************************99777776666666555444888899999 PP

      AAA_30  74 akllkrlkgrarlepgtllivDEag 98 
                   ll++l+    l++ +++i+DEa 
  CDO72409.1 482 GVLLRELATDFLLKKYSVIIIDEAH 506
                 9999888876888899*******95 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05      0.03      16      43 ..     392     419 ..     385     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
      ATPase  16 ipegrvvlitGepGtGKtifalqFlikg 43 
                 i  ++vv i+Ge+G+GKt+ + qFl++ 
  CDO72409.1 392 ILLNSVVIICGETGSGKTTQVPQFLYEA 419
                 66789*********************85 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.7     0.012        20     133     176 ..      38     107 ..       3     138 .. 0.60
   2 ?   10.3   1.2   0.00045      0.73      21      34 ..     397     410 ..     393     656 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
      AAA_23 133 nlilflgqerfeefel................kdkkerleelekeleeledekkllekl..........e 176
                 ++i+ + +e++e++++                ++kk+rl+++++++ ++e++ +l+ekl          +
  CDO72409.1  38 PIIVPKSEEEKEKERRlkmreemlaqldskanSKKKKRLDKYIEKKLKQEERLELFEKLsksqahgsaaL 107
                 4555555555333333333333333344444477788888888888888888888888855555554441 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00045
      AAA_23  21 ltlItGpNGaGKTT 34 
                 +++I+G++G+GKTT
  CDO72409.1 397 VVIICGETGSGKTT 410
                 789**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1447  (0.0807072); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.48
# Mc/sec: 7592.73
//
Query:       CDO72410.1  [L=550]
Description: hypothetical protein BN946_scf184977.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-43  147.3   1.5    3.1e-43  147.2   0.1    1.7  2  ORC_WH_C  Origin recognition complex winged helix C-terminal


Domain annotation for each model (and alignments):
>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.28   4.9e+03      92      98 ..     298     304 ..     261     327 .. 0.54
   2 !  147.2   0.1   1.8e-47   3.1e-43       1     140 []     362     546 ..     362     546 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.28
    ORC_WH_C  92 kekeede 98 
                 +++  +e
  CDO72410.1 298 DREPHEE 304
                 1111111 PP

  == domain 2  score: 147.2 bits;  conditional E-value: 1.8e-47
    ORC_WH_C   1 RaaiesaLaepedylrcal..............eeee..eeeeslaslpdtsilyklyleagrliNvyDwyeaFkqvlekereedkeseaeeeekak.. 81 
                 R +++saL+ p+d++r+++              ++ e   +e+ +++lpdtsi++++y eagr++NvyDw+e+F+ vle++r+e ++ e++  ++++  
  CDO72410.1 362 RPTVVSALLYPYDFARAHAelvqtssswedagpSQPEpfVREPDMWELPDTSIAFRRYMEAGRMVNVYDWFESFAVVLESQRRELRRLEKATARRSSaq 460
                 889****************9**9999998887744447899****************************************999887776666666679 PP

    ORC_WH_C  82 ...........................eeeaekkkkkkekeedeedeeewekelqarFiralheLellGliketgrkadhvaklvw 140
                                            ee  ++++ ++e+e de++ee+w+ e+qarFiralheL+++G++k+tgrk dhv k+++
  CDO72410.1 461 pndkqpvqngrgrrrgstasarmdvdgEEGGNDENVESEEEMDEKEEERWKIEVQARFIRALHELDYMGFVKHTGRKPDHVIKAIY 546
                 9*************************9999999***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3590.50
//
Query:       CDO72411.1  [L=495]
Description: hypothetical protein BN946_scf184977.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     1e-124  415.7   0.0   1.2e-124  415.4   0.0    1.1  1  6PGD           6-phosphogluconate dehydrogenase, C-terminal d
    7.2e-48  162.7   0.0    1.1e-47  162.2   0.0    1.2  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
        1.6    8.6   5.7        2.9    7.8   0.3    2.4  2  CoatB          Bacteriophage coat protein B


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.4   0.0    2e-128  1.2e-124       1     289 []     185     481 ..     185     481 .. 0.97

  Alignments for each domain:
  == domain 1  score: 415.4 bits;  conditional E-value: 2e-128
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvp 99 
                 GhyVKmvHNGieygdmqliaE+yd+lk++lgl+++eiae+Fe+Wnkg l+s+Lieita+il+ +d+ dg+plv kilD+agqkGTgkwt+++al+ g+p
  CDO72411.1 185 GHYVKMVHNGIEYGDMQLIAESYDILKRGLGLKESEIAEIFETWNKGVLDSFLIEITANILKFNDD-DGEPLVTKILDSAGQKGTGKWTAIAALDAGMP 282
                 9****************************************************************7.899***************************** PP

        6PGD 100 vptiaeavfaRllSslkeervkaskllkeeee.keeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiIrakfldki 197
                 v++i eavfaR+lSslkeer++ask+++++++  ++ dk++fi+dl++Alyaski+sY+qg++l+++ +k+ gw+ln+a ia++WrgGCiI++ fl +i
  CDO72411.1 283 VTLIGEAVFARCLSSLKEERIRASKQIAGPQKePFKGDKKQFIDDLEQALYASKIISYTQGFMLMRQTAKDLGWSLNYAGIAHMWRGGCIIKSVFLGDI 381
                 ***************************876666999*************************************************************** PP

        6PGD 198 keafeknpelenllldpefakelkealealrrvvalaveagipvpalsaalaYldslrserlpanliqaqrDyFGahtyervdk........egkfhte 288
                 ++a++k+ +le+ll+d++f+k++++a++ +rr++a+av +gip+pa+s+ala++d++rse +panliqaqrDyFGaht++ +          ++ +h++
  CDO72411.1 382 TAAYQKKGDLESLLFDDFFNKAVHKAQPGWRRIIAQAVLWGIPTPAFSTALAFFDGYRSEVVPANLIQAQRDYFGAHTFRVMPGkenaklkaGEDIHVN 480
                 *******************************************************************************99755456667777778888 PP

        6PGD 289 W 289
                 W
  CDO72411.1 481 W 481
                 7 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.0   1.8e-51   1.1e-47       1     152 [.       7     175 ..       7     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 162.2 bits;  conditional E-value: 1.8e-51
                    EEEEE--SHH....HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT- CS
  NAD_binding_2   1 kigfiGlGvM....Gsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasl...dvvitmvkagkavdeviegllealkkgd 84 
                    +ig+iGl+vM    G+n++ln+ ++g++v++ynrt++kv+++++++     +++a+++eel+a+l   +++i++vkag+avd++ie+l+++l++gd
     CDO72411.1   7 DIGLIGLAVMvifaGQNLILNMNDKGFTVVAYNRTTSKVDHFLENEakgtkVVGAHTVEELCAKLkrpRKIILLVKAGPAVDSFIEQLIPHLEPGD 102
                    69*******************************************88899999******************************************* PP

                    EEEE-S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE......E CS
  NAD_binding_2  85 ilidgstsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga......k 152
                    i+idg++s++ d++++ k+l++kg+ f++ +VSGGeegA++G+ s+m+GGs +a++++k++++a +a      +
     CDO72411.1 103 IIIDGGNSHYPDSIRRCKYLESKGFLFVGSGVSGGEEGARHGP-SLMPGGSPAAWPAIKEIFQATAAqvngepC 175
                    *******************************************.***********************5544444 PP

>> CoatB  Bacteriophage coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3   0.00048       2.9      19      35 ..       5      21 ..       1      22 [. 0.85
   2 ?    2.6   0.9     0.021   1.2e+02      17      31 ..     278     292 ..     272     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00048
       CoatB 19 kadiaaiGaaVLvvlVg 35
                + di++iG aV+v+ +g
  CDO72411.1  5 VGDIGLIGLAVMVIFAG 21
                579**********9875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.021
       CoatB  17 tAkadiaaiGaaVLv 31 
                 +A+ ++++iG aV++
  CDO72411.1 278 DAGMPVTLIGEAVFA 292
                 6999*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3671.60
//
Query:       CDO72412.1  [L=819]
Description: hypothetical protein BN946_scf184977.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-26   93.6   0.0    2.8e-26   92.8   0.0    1.5  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   1.5e-30   2.8e-26       2     223 .]     119     380 ..     118     380 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 1.5e-30
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglel..pfdeeelrkileelleannsen....gr..lrllvsrgggglgaatsepsvavyvsal 86 
                  lfE++++y   ng++  f+ d +++R++ sae++ ++l  +f+ e++ ++++el++ ++ +     g+  l ++  +++  lg   + ++++++v+++
   CDO72412.1 119 LFEGLKAYrdtNGKVtlFRPDMNMKRMNTSAERIAMPLvkSFNGEAMVQLMKELIRLDKHWIpdlpGYslLTCMAVGTQPALG-VAPPKEALLFVICS 215
                  7*******99999999899************88755544489***********************976767777777776666.9999********** PP

  Aminotran_4  87 ppgpeseke.....lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevl.lvdedgnvtEgstsNv.fivk....ggelitPplssgiL 173
                  p gp++ +      l+ +t + +r+++    ++    ny+  v+a+++a+e+g+ + l l  ++ ++tE++t+N  +++k      el+tPpl++ iL
   CDO72412.1 216 PVGPYYPQGfkpvaLYGTTEY-TRASPGGIGAYKLGANYAAGVAAQKKAAEQGYVQNLwLHGPEHYITEVGTMNAfVVFKrsdgSVELVTPPLDGIIL 312
                  ************755555555.7777777777777888***************9988868889999*********666668987779*********** PP

  Aminotran_4 174 pGitrrallelakal..gleve...........ereitlkdle......eadeafltntlrgvlpvrsi 223
                  pG+tr+++l+lak++  g +++           er++t+k+++      +  e f t+t++ + pv +i
   CDO72412.1 313 PGVTRDSVLALAKEHsaG-KIRvpeltdklvvsERPVTMKEVKeaaqkgDLVEFFGTGTAAVISPVDRI 380
                  **************9653.455668889999999999999999999988899**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5447.28
//
Query:       CDO72413.1  [L=118]
Description: hypothetical protein BN946_scf184977.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 801.67
//
Query:       CDO72414.1  [L=162]
Description: hypothetical protein BN946_scf184977.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1189.32
//
Query:       CDO72415.1  [L=1019]
Description: hypothetical protein BN946_scf184977.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-10   39.5  26.8    8.7e-06   25.9  11.3    2.8  3  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.57     1e+04      45      53 ..     186     194 ..     173     199 .. 0.74
   2 !   19.9   6.1   3.6e-08   0.00065       5      62 .]     253     313 ..     249     313 .. 0.90
   3 !   25.9  11.3   4.8e-10   8.7e-06      15      60 ..     327     368 ..     317     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.57
         IBR  45 gfefCfnCk 53 
                 + ++C+ C+
  CDO72415.1 186 RAATCVICR 194
                 467888887 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.6e-08
         IBR   5 klklkksles.dpnlkwCprpdCeaiiekseg.cksvtCskCgfefCfnCkkewHegl.sC 62 
                 k  +kk++e  ++++++C    C+a++       +++ C+ C  ++C +Ckk++H++  +C
  CDO72415.1 253 KVVEKKTIEFgTKDRVYCCIRTCSAFLGAATVvAADLLCTVCWVSTCGHCKKAAHSKSiQC 313
                 566789999999***************99999888899*****************977677 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 4.8e-10
         IBR  15 dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHegl 60 
                  + +k Cp  +C++++e + gc ++ C+ C+++fC+ C ++w   +
  CDO72415.1 327 AEGWKRCP--GCGHLVELTIGCYHMICR-CRHQFCYLCTAKWRT-C 368
                 4569****..******************.*************74.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6606.09
//
Query:       CDO72416.1  [L=207]
Description: hypothetical protein BN946_scf184977.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-18   65.4   0.8    4.6e-16   59.3   0.1    2.4  2  HIT       HIT domain
     0.0011   19.5   0.3      0.003   18.0   0.3    1.7  2  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.2    0.0066        59       6      42 ..      13      49 ..       9      53 .. 0.80
   2 !   59.3   0.1   5.2e-20   4.6e-16      29      96 ..      53     120 ..      49     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0066
                CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGG CS
         HIT  6 stvvyeddlvlafldidpkapghlLvipkkhlselhd 42
                 +v+y+  l+ a+++ +p +pg  L ++  h  +lh+
  CDO72416.1 13 RQVFYRSRLAAAIVNLKPIVPGPHLRPRVPHRHRLHH 49
                6899****************99777666666666665 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 5.2e-20
                 EEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT  29 lLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                 +Lvip + +++l dl+++ela+l++ v++v k++++++ ++gl+++ ++g++agq+v+h+H+H++pr+
  CDO72416.1  53 VLVIPTRIAPRLADLKHDELADLIASVQHVGKVIERVYGADGLTIACQDGKAAGQTVPHVHFHLLPRK 120
                 7*****************************************************************96 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   3.4e-07     0.003      37     107 ..      53     124 ..      14     129 .. 0.84
   2 ?   -2.0   0.0      0.55   4.9e+03      49      74 ..     168     192 ..     162     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.4e-07
                 EEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T.-EEEEE--SCCCT--S-S--EEEEE...... CS
      DcpS_C  37 llvipkrdikslrdLtkehlpllkemrekakkvieekyne.vdaeelrvgvhyqPsvyhlHlHvisldfesp 107
                 +lvip r  + l dL++++l  l + ++ + kvie+ y + +     + g  + ++v h+H+H++  + +++
  CDO72416.1  53 VLVIPTRIAPRLADLKHDELADLIASVQHVGKVIERVYGAdGLTIACQDGKAAGQTVPHVHFHLLPRKLQGD 124
                 59****************9999999999999*******6654444556699*************98887765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.55
                 GG--TTTTTHHHHHHHHHHHHHHHTT CS
      DcpS_C  49 rdLtkehlpllkemrekakkvieeky 74 
                 +d++ ++  +lk++++ a++++  + 
  CDO72416.1 168 EDME-KEARWLKTFFDAAEAAAAAEG 192
                 4444.456799999988888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1521.67
//
Query:       CDO72417.1  [L=258]
Description: hypothetical protein BN946_scf184977.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-74  250.8   0.0    1.5e-74  250.6   0.0    1.0  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho
  ------ inclusion threshold ------
      0.031   14.3   0.1      0.073   13.1   0.1    1.6  1  Lac_bphage_repr  Lactococcus bacteriophage repressor
       0.22   10.9   0.0       0.33   10.3   0.0    1.1  1  Evf              Virulence factor Evf


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.6   0.0   2.6e-78   1.5e-74       2     218 ..      16     230 ..      15     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 250.6 bits;  conditional E-value: 2.6e-78
                      SHHHHHHHHHHHHHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS---GG CS
  Glucosamine_iso   2 dkeelaealaarivealeealaergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERfVpaddpdsNaklareallskvkipea 95 
                      +++el +ala+ iv+a++e ++++gr+++a+sGGs+pk+l  ++ +      a++w+k++vf++DER+Vp d++dsN++l  ++l+skv+ip +
       CDO72417.1  16 NDQELQAALAHFIVKAQKESIEKKGRFTVAISGGSLPKQLAGLIDNP-----AVKWDKWQVFYADERVVPLDHEDSNHHLNTRELFSKVPIPRQ 104
                      6799**************************************99963.....49**************************************** PP

                      GEE-S-TTSSTHHHHHHHHHHHHHHHHCC....SSSSSESEEEE---TTS-BTTB-TTCHHHHCSSSSEEEESSBSTSSS-EEEE-HHHHTTCS CS
  Glucosamine_iso  96 nvhpikesaaeapeaaaaayeeelkella....kelpvfDlvlLGmGpDGHtaSLFPgspeleetdrlvvavedspkpppeRitlTlpvlnsar 185
                      n+h+i+ s a+++e+ a+aye+el +++a     ++p fDlvlLG+GpDGHt+SLFPg++ l e+dr+v+ +edspkppp+R+tlTlpvln+a+
       CDO72417.1 105 NIHTIDPSLADDLEELADAYEKELIREFAmkdsARFPIFDLVLLGIGPDGHTCSLFPGHALLSEEDRWVAYIEDSPKPPPRRVTLTLPVLNHAA 198
                      ******99999*************999999**99************************************************************ PP

                      EEEEEEESHHHHHHHHHHHTT..TTTSGGGGH- CS
  Glucosamine_iso 186 evlflvaGeeKaealeevlsgedpeelPaalve 218
                      +++f+v+Ge+Ka++l+ +l+ e ++ lPa++v+
       CDO72417.1 199 RIAFVVTGESKADVLHTILD-EPEKGLPASRVR 230
                      *******************9.556899*****7 PP

>> Lac_bphage_repr  Lactococcus bacteriophage repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.2e-05     0.073       8      26 ..      54      72 ..      50      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
  Lac_bphage_repr  8 DLaklvDdskvDWdeWVSF 26
                      La l+D++ v Wd+W  F
       CDO72417.1 54 QLAGLIDNPAVKWDKWQVF 72
                     6999************766 PP

>> Evf  Virulence factor Evf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.6e-05      0.33     204     230 ..      16      42 ..      13      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.6e-05
         Evf 204 edpeiktafdnfilknkkssieesddf 230
                 +d+e+++a+ +fi+k +k sie+   f
  CDO72417.1  16 NDQELQAALAHFIVKAQKESIEKKGRF 42 
                 689*******************98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1766.17
//
Query:       CDO72418.1  [L=114]
Description: hypothetical protein BN946_scf184977.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   54.2   0.1    2.2e-14   53.9   0.1    1.1  1  PXA         PXA domain
  ------ inclusion threshold ------
      0.051   13.4   0.0      0.059   13.2   0.0    1.2  1  TMEM132D_N  Mature oligodendrocyte transmembrane protein, TME


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   2.4e-18   2.2e-14     125     181 ..      12      68 ..       6      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 2.4e-18
         PXA 125 aylrslverlLslllppedlesetvrtlvreilanvvlkplleklsdPdfinqliik 181
                  ylr++v+++L++ lpp+d+++et+r+++re++ nv    +l +l++P+fi+++i +
  CDO72418.1  12 VYLRQAVDHVLKYSLPPQDYQPETERYIIREVVLNVLAASVLPRLTQPWFIHKIILD 68 
                 5*****************************************************986 PP

>> TMEM132D_N  Mature oligodendrocyte transmembrane protein, TMEM132D, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.6e-06     0.059      54     123 ..      35     110 ..      12     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.6e-06
  TMEM132D_N  54 veqvvplellqssslleisnkftvnwkvravive...ek..vssskpkvqvLFylaGrdwd.dakakeklpCvrlf 123
                 +e+ + +e++++    ++ +++t +w ++  i++   ++  v + +  v++LFyl+ r    +  + +   Cv+l+
  CDO72418.1  35 TERYIIREVVLNVLAASVLPRLTQPWFIHKIILDllgPEipVDAAEVSVRILFYLTSRGMAgQDVPVACRLCVHLH 110
                 5666777788888888899999****99999986333442266778889*****9887776334455666688876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 819.97
//
Query:       CDO72419.1  [L=119]
Description: hypothetical protein BN946_scf184977.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 809.53
//
Query:       CDO72420.1  [L=732]
Description: hypothetical protein BN946_scf184977.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-11   42.5   0.0    1.1e-10   41.6   0.0    1.4  1  PWI             PWI domain
     0.0042   16.9   0.0      0.013   15.3   0.0    1.9  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.038   14.1   0.1    1.6  1  RRM_3           RNA binding motif
       0.22   11.5   6.2       0.36   10.8   6.2    1.3  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        1.3    8.7  10.1        2.9    7.6  10.1    1.5  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.2e-14   1.1e-10       2      65 ..      10      75 ..       9      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.2e-14
         PWI  2 vlkpWIakkitellgfeDdvvieyvlnlLeee..keldpkklqinltgfLekeaekFvkeLWelll 65
                 lkpW  ++++ ++++e   +++yvl+lL+++  +    k+l  +l++fLeke++ Fv+ L+ +l 
  CDO72420.1 10 HLKPWLVRTLEPICDAEPSALADYVLALLKHNapEPELRKELVVQLEEFLEKESASFVDTLFTVLR 75
                59***************************7644233345899********************9885 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.7e-06     0.013      14      67 ..     307     354 ..     293     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
                 HHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1  14 eLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                  + ++FskfG ++++ + +     ++  a V+F s+++A kA +   +  +g+r
  CDO72420.1 307 AVNDWFSKFGTVTNVAVDS-----HTAKALVTFSSHDEAYKAWK-SEEAIFGNR 354
                 6789********6666655.....8*****************98.555555555 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     1e-05     0.038      15      59 ..     305     349 ..     294     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
                 HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHH CS
       RRM_3  15 redikellsklgevayvdyekgdkegevrFkedeeakkalekate 59 
                    + + +sk+g+v  v++ +  +++ v F +++ea ka+++  +
  CDO72420.1 305 LGAVNDWFSKFGTVTNVAVDSHTAKALVTFSSHDEAYKAWKSEEA 349
                 567899**********************************98765 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.2    0.0001      0.36     149     297 ..     369     531 ..     319     593 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
       TFIIA 149 sgaqqiaaqplqqvvqq.sqgsaaqssvaalqaq.sqqaqalaepqqqlekq..........qqqqqqqqqqqqqqqvqqqqqe.......esqqaqqa 228
                 +++q+++a+ +  v q  + +sa   s a+++++  +++ + + p ++ +++          +q+  +qq + q++               ++q+++  
  CDO72420.1 369 QVGQRMLAASAPVVAQRaAVQSAPGPSYAPSEGSpAPHTPTSTAPASR-KPSvtssasalaaKQRLLEQQIAEQKS-------LmallstaSPQEKKDI 459
                 445555544444443333333333344444444433333333333333.111333333444322222222222222.......0122211111111111 PP

       TFIIA 229 sqe..qvag.sqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidri.re.........ealkakelekesk 297
                   +  +    +++++s t+ a++++ +++    ++ + + ++++++  l+re++d+  +          e        +es+
  CDO72420.1 460 MARlrK--LnEEMKPSATSAAASQSPQRTASSPAQRAGSTPRTEEQARLEREKLDKElELhhastnaegE--------EEST 531
                 111221..11233333333333222222222334444444444444455555555442112111111110........1111 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.1   0.00081       2.9       6     162 ..     393     547 ..     389     558 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00081
                 XXXXXXXXXX.......XXXXXXXX--STTS----------TTT--HHHH............HHS-HHHHHHHHHHHHHHHHH---------------- CS
  Cwf_Cwc_15   6 RPtfdpakGk......ealrgpskqyssrdlpahtkLKfRqegqgteeel............ekrdlraeLeeaeaeakakkrkkaeleaeeeeekekk 86 
                  P ++p +G       +++   s++ s  + ++    K R   q+ +e++            ek+d+ a L + ++e k + +++a++++ +++ +++ 
  CDO72420.1 393 GPSYAPSEGSpaphtpTSTAPASRKPSVTSSASALAAKQRLLEQQIAEQKslmallstaspqEKKDIMARLRKLNEEMKPSATSAAASQSPQRT-ASSP 490
                 5888888888888777555555556666666666666666666666444433345566666566666666666665555555443333332221.1111 PP

                 ---------------------..----------------------------------------------------- CS
  Cwf_Cwc_15  87 eeeeeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikrerae 162
                 +++  +    + r++e++  e++++d++ e ++                + + + +e+ t+eL + Lek+k+e a 
  CDO72420.1 491 AQRAGS----TPRTEEQARLEREKLDKELELHH---------------ASTNAEGEEESTEELKAKLEKLKAEAAS 547
                 111111....11111111122234444444432...............3334445577899999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1299  (0.0724525); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 4669.83
//
Query:       CDO72421.1  [L=431]
Description: hypothetical protein BN946_scf184977.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-13   49.6  24.3    2.1e-07   31.1   3.4    2.7  2  IBR         IBR domain, a half RING-finger domain
     0.0013   19.0   3.0     0.0013   19.0   3.0    3.8  4  zf-RING_2   Ring finger domain
     0.0027   17.5   0.7     0.0027   17.5   0.7    4.1  3  zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
     0.0059   16.5   0.6     0.0059   16.5   0.6    3.9  3  zf-C3HC4    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   3.4   4.6e-11   2.1e-07      13      62 .]     309     364 ..     300     364 .. 0.76
   2 !   23.5  13.0   1.1e-08   4.9e-05      15      58 ..     378     418 ..     373     421 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.6e-11
         IBR  13 es.dpnlkwCprpdCeaiiekseg.....cksvtCskCgfefCfnCkkewHeglsC 62 
                 e  + ++++C +p C +++ +  +      ++++C++C   +C +Ck++ H+g+ C
  CDO72421.1 309 EFtTADRVYCHNPACATFLGPALDedslnATTLRCPECDAGTCASCKEQIHPGVPC 364
                 3337889************555553344344488********************99 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.1e-08
         IBR  15 dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHe 58 
                 ++ ++ Cp   C++++e s gc ++ C+ C+++fC+ C ++w e
  CDO72421.1 378 EKGWQRCP--SCKHLVELSFGCYHIICR-CNKQFCYLCAAPWKE 418
                 66799***..9*****************.*************86 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   3.0     3e-07    0.0013       2      36 ..     237     269 ..     236     282 .. 0.83
   2 ?   -0.7   0.6      0.42   1.9e+03      33      43 ..     336     346 ..     308     347 .. 0.48
   3 ?   -1.3   2.5      0.63   2.8e+03      18      32 ..     343     357 ..     327     366 .. 0.64
   4 ?   -3.6  15.8       3.3   1.5e+04       2      35 ..     383     418 ..     382     422 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3e-07
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrs 36 
                 +C++C ++++   sv+ l+CgH f+r+C+++++++
  CDO72421.1 237 SCALCGDDIE--GSVVHLDCGHAFDRTCIAEMFTK 269
                 7********6..5777778**********997654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.42
   zf-RING_2  33 wlrssstCPlC 43 
                 +++++ +CP C
  CDO72421.1 336 LNATTLRCPEC 346
                 34455559988 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.63
   zf-RING_2  18 llpCgHvfhreCler 32 
                 + +C    + +C e+
  CDO72421.1 343 CPECDAGTCASCKEQ 357
                 224766677777655 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.3
   zf-RING_2   2 eCpIC..leelssadsvlllpCgHvfhreClerwlr 35 
                  Cp C  l els +   +++ C++ f++ C++ w +
  CDO72421.1 383 RCPSCkhLVELSFGCYHIICRCNKQFCYLCAAPWKE 418
                 699996667777777777888***********9964 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.7     6e-07    0.0027       2      31 ..     238     267 ..     237     271 .. 0.88
   2 ?    0.4   1.9      0.14   6.1e+02      14      28 ..     342     356 ..     333     364 .. 0.65
   3 ?   -7.5  15.2         4   1.8e+04      15      35 ..     401     417 ..     383     421 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsL 31 
                 C++C d ++  +v   CgH f + Ci+++ 
  CDO72421.1 238 CALCGDDIEGSVVHLDCGHAFDRTCIAEMF 267
                 *********988888***********9865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
  zf-C3HC4_2  14 vvtpCgHvfCqkCil 28 
                 +  +C  ++C++C  
  CDO72421.1 342 RCPECDAGTCASCKE 356
                 333788888888865 PP

  == domain 3  score: -7.5 bits;  conditional E-value: 4
  zf-C3HC4_2  15 vtpCgHvfCqkCilrsLeekn 35 
                 +  C+ +fC+ C +++    +
  CDO72421.1 401 ICRCNKQFCYLCAAPW----K 417
                 4489********9998....3 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.6   1.3e-06    0.0059       1      32 [.     238     269 ..     238     281 .. 0.88
   2 ?   -1.3   0.4      0.47   2.1e+03      34      41 .]     339     346 ..     333     346 .. 0.74
   3 ?   -6.4  13.9         4   1.8e+04       1      30 [.     384     417 ..     384     422 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks 32 
                 C++C + ++  +  l+C+H+f ++Ci ++  +
  CDO72421.1 238 CALCGDDIEGSVVHLDCGHAFDRTCIAEMFTK 269
                 ***************************99874 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
                 SSB--TTT CS
    zf-C3HC4  34 kkvkCPlC 41 
                 ++  CP+C
  CDO72421.1 339 TTLRCPEC 346
                 5667***9 PP

  == domain 3  score: -6.4 bits;  conditional E-value: 4
                 -TTT-S--SS-E.....E-TTS--B-CHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn....elleCkHsfCskCirkil 30 
                 Cp C++ ++        +  C+ +fC+ C   + 
  CDO72421.1 384 CPSCKHLVELSFgcyhIICRCNKQFCYLCAAPWK 417
                 7777777777667777888999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.92
# Mc/sec: 1420.06
//
Query:       CDO72422.1  [L=105]
Description: hypothetical protein BN946_scf184977.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 750.97
//
Query:       CDO72423.1  [L=250]
Description: hypothetical protein BN946_scf184977.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0031   18.0   0.0     0.0042   17.5   0.0    1.3  1  Sld5      GINS complex protein
  ------ inclusion threshold ------
       0.14   12.4   0.1       0.23   11.6   0.1    1.4  1  SLD5_C    DNA replication complex GINS protein SLD5 C-terminu


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.7e-07    0.0042      26     108 ..      50     157 ..      11     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.7e-07
                 CHHHHHHCCCHHTTSSSSTTTTTTHHHHHHHHHHHHT.HCHHHHHHHHHHHHHHHHHHHTHCHHHHHH..............................H CS
        Sld5  26 spesleailedetkssdlpslpphflelavkllelardldelkrllrdllevRlakirkfaenledaa..............................g 94 
                  ++ l++  e+  + ++ p+  p+   + ++++++ r+    kr+l++++  R++ ++++ +++++a+                               
  CDO72423.1  50 IEDALSRSFENSAD-APEPDKDPYMPTILLYQTAILRN----KRCLLAYHHHRIEFLKDLYWSVGGALplllavppagagasagahaggagaagxxxxX 143
                 33444444444444.488899999999999********....***********************9997777777777766666666666666666665 PP

                 TS-TCCHCCS-HHH CS
        Sld5  95 ggggellsglseeE 108
                   +++ +s+ls++E
  CDO72423.1 144 XXPQDVRSKLSPHE 157
                 55666666666665 PP

>> SLD5_C  DNA replication complex GINS protein SLD5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.6e-05      0.23       7      52 ..     205     246 ..     199     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
      SLD5_C   7 VFvrvgkdvgtvtieelgedgdvelekGdiyvvRYsvvkdlvesGk 52 
                 V vrv +d+ +v   elg     + ++G  ++vR s++++l+ +G 
  CDO72423.1 205 VHVRVVRDC-GVVHTELGAI---DFKRGHRFLVRRSDIEHLIVQGY 246
                 889******.5555555555...8******************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1809.22
//
Query:       CDO72424.1  [L=202]
Description: hypothetical protein BN946_scf184977.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-14   53.6   0.8    1.7e-07   31.2   0.2    2.2  2  LysM        LysM domain
  ------ inclusion threshold ------
       0.43   10.9   0.0       0.43   10.9   0.0    2.6  3  fn2         Fibronectin type II domain
       0.64    8.5   4.8       0.33    9.4   0.1    2.0  2  Agro_virD5  Agrobacterium VirD5 protein


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.2   2.8e-11   1.7e-07       1      43 [.      29      74 ..      29      75 .. 0.95
   2 !   21.2   0.0   3.7e-08   0.00022       1      43 [.      85     129 ..      85     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.8e-11
                EEE-TT--HHHHHHHCTCHHHHHHHHC....TCSSCGG--TTEEEEE CS
        LysM  1 YtVkkGDTLwsIAkrygitveklleaN....nlsspdkifpGqkLki 43
                YtVk+GD + +I+++++++  +l+  N    n  +++ +++Gq+L++
  CDO72424.1 29 YTVKEGDWCDTISAANNVSTYQLAIVNaksiNSACNN-LQVGQVLCL 74
                9****************************98888888.*******97 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 3.7e-08
                 EEE-TT--HHHHHHHCTCHHHHHHHHC...TCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaN...nlsspdkifpGqkLki 43 
                 ++V+k +T+  I + y+i+   l + N     s+++ +++G +L++
  CDO72424.1  85 HVVQKDETCDLITGTYNINATLLYANNpqiDSSCDN-LYIGEVLCV 129
                 89*****************55555555955555555.********8 PP

>> fn2  Fibronectin type II domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.2e-05      0.43       4      34 ..      14      44 ..      12      50 .. 0.89
   2 ?   -2.5   0.3       1.1   6.4e+03      13      19 ..      79      85 ..      75      93 .. 0.67
   3 ?    0.9   0.1     0.096   5.7e+02      19      27 ..     190     199 ..     184     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
                SEEETTEEESS-B-TTT.SSS-EEESSSBHH CS
         fn2  4 PFtykgktytsCttdgrssgrpWCattsnyd 34
                PF+ + +   sCt++   ++  WC t s ++
  CDO72424.1 14 PFVAQAVLAASCTRQYTVKEGDWCDTISAAN 44
                9***********************9987665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                SS-B-TT CS
         fn2 13 tsCttdg 19
                ++Ct+++
  CDO72424.1 79 EDCTNTH 85
                5788765 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.096
                 T.T.SSS-EE CS
         fn2  19 g.rssgrpWC 27 
                 + ++++ pWC
  CDO72424.1 190 DeDDEDLPWC 199
                 4245679*** PP

>> Agro_virD5  Agrobacterium VirD5 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   5.5e-05      0.33     298     349 ..      46      97 ..      13     114 .. 0.83
   2 ?    0.7   1.0     0.024   1.4e+02     620     657 ..     157     194 ..     147     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 5.5e-05
  Agro_virD5 298 alarlaaqeasnlqslacsqlearrvlnfgssgsdadqtesiakssrlddvs 349
                 + +++ a  +++  + ac +l+  +vl +g+ g d+ +t+ + k +  d ++
  CDO72424.1  46 VSTYQLAIVNAKSINSACNNLQVGQVLCLGTEGEDCTNTHVVQKDETCDLIT 97 
                 5677777778888899**************************9999888766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.024
  Agro_virD5 620 kallvaalnrtaaligaspleaqsstakveyatdefde 657
                 ka+  +a   taa+  a+p  + ss+a +  a de de
  CDO72424.1 157 KAASTTAASTTAASTSAAPSPTSSSAAPTATADDEDDE 194
                 7788889999**********999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1379.18
//
Query:       CDO72425.1  [L=298]
Description: hypothetical protein BN946_scf184977.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-79  266.5   0.0    2.5e-79  266.2   0.0    1.0  1  ParA         NUBPL iron-transfer P-loop NTPase
    6.8e-11   42.3   0.0    2.2e-10   40.7   0.0    1.9  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.1e-09   37.5   0.1      2e-06   27.9   0.0    2.1  2  AAA_31       AAA domain
    0.00053   19.4   0.0     0.0012   18.2   0.0    1.6  2  MipZ         ATPase MipZ
     0.0012   18.5   0.2     0.0022   17.6   0.0    1.5  2  AAA_25       AAA domain
     0.0045   16.2   3.6     0.0052   16.0   0.6    2.2  3  ArsA_ATPase  Anion-transporting ATPase
  ------ inclusion threshold ------
       0.11   11.9   0.1       0.18   11.2   0.1    1.3  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.2   0.0   9.9e-83   2.5e-79       2     232 ..      16     269 ..      15     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 266.2 bits;  conditional E-value: 9.9e-83
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLa.......kkglkvgllDaDiyGpsiprllgvee.ekpeqs.ekkliPveakgikvmSigflle.......s 84 
                 vkkviav+SgKGGVGKStvavnlA++La       ++  +vg+lD+Di+Gpsip+l+ +e+ ++p+ + +  ++Pv ++g+ +mS+gfll+       s
  CDO72425.1  16 VKKVIAVASGKGGVGKSTVAVNLAFSLAmhaehapRQRPRVGVLDLDIFGPSIPKLMALENvDEPQLTeAGAIVPVVNHGLPCMSMGFLLPkapgtdsS 114
                 9**************************9888877778889******************9995345555344599****************855555545 PP

        ParA  85 edeavvwrGpmkskaikqllkdvewge......lDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgf 177
                  d++vvwrG m++ka++qll dv+w +      lD+L+iD+PPGtgD+ lt+ q ++++gaviV+tpq+val+dv+k+++mf+kv+v+++G++ N s+f
  CDO72425.1 115 ADTPVVWRGLMVQKAVQQLLFDVDWRDmeggseLDVLVIDMPPGTGDVPLTLGQLVNVDGAVIVSTPQDVALTDVRKGVSMFQKVSVPIVGLLLNESHF 213
                 79***********************74444445****************************************************************** PP

        ParA 178 vcpkcgekteifgk.gggeklaeelgvpllgeipldpeireasdegkplvlkepes 232
                 +cp+c++ +e+fg+    +++a+++gv++lge+pl p +++ +d+g p++l +++s
  CDO72425.1 214 ICPSCATPHELFGSpAAFRATAARFGVDVLGELPLVPGVSRGGDRGVPYALYSTDS 269
                 ************9835668999**************************98887765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   8.4e-14   2.2e-10       1     126 [.      20     260 ..      20     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.4e-14
                 EEEEESSTTSSHHHHHHHHHHHHH.......HTT--EEEEEEEESSCCCCHHTTEB-HHHH...................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................... RF
        CbiA   1 iaiastkGGvGKTtlaanLarala.......rrglrVllvDaDpqannlaileglendiep...................................... 54 
                 ia+as+kGGvGK+t+a+nLa++la       r++ rV ++D+D  +++   l+ len  ep                                      
  CDO72425.1  20 IAVASGKGGVGKSTVAVNLAFSLAmhaehapRQRPRVGVLDLDIFGPSIPKLMALENVDEPqlteagaivpvvnhglpcmsmgfllpkapgtdssadtp 118
                 89*********************9555555555679************9999999999999************************************** PP

                 .....................................................................CCHCCCHHHHHHCHCHHHH....EEEEEEE CS
                 .....................................................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
        CbiA  55 .....................................................................dlkrllellealgkkkall..lkiagvvln 82 
                                                                                      d+ +++ ++++++ +   l   + +++ + 
  CDO72425.1 119 vvwrglmvqkavqqllfdvdwrdmeggseldvlvidmppgtgdvpltlgqlvnvdgavivstpqdvaltDVRKGVSMFQKVSVPIVGLllNESHFICPS 217
                 *********************************************************************************999777787788888888 PP

                 EESS...-TTCHHHHHHHHHHCTS-EEEEEE--CCHCCCCHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  83 rvdgeneetllkealeelkqrygvpvlgviprdeavaeaparge 126
                    + + + +   + ++  +r+gv vlg++p + +v++   rg 
  CDO72425.1 218 CATPHELFGSPAAFRATA-ARFGVDVLGELPLVPGVSRGGDRGV 260
                 888888899888888886.589************9999888775 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   7.7e-10     2e-06       2      29 ..      18      45 ..      17      63 .. 0.89
   2 !    7.7   0.0    0.0012       3.1     117     167 ..     147     199 ..     131     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7.7e-10
      AAA_31  2 kvIaianqKGGvGKTTtsvnlaaalakl 29
                kvIa+a  KGGvGK+T +vnla +la  
  CDO72425.1 18 KVIAVASGKGGVGKSTVAVNLAFSLAMH 45
                9************************964 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
      AAA_31 117 eYDyiiiDcpPsLg..lltenaLvasdsviipvqaeayaleGleqllktieev 167
                 e D+ +iD+pP  g   lt   Lv  d  +i+  +++ al  +++ ++++++v
  CDO72425.1 147 ELDVLVIDMPPGTGdvPLTLGQLVNVDGAVIVSTPQDVALTDVRKGVSMFQKV 199
                 679*********994347999*******************9988877766665 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.8e-07    0.0012       2      40 ..      19      64 ..      18      81 .. 0.78
   2 ?   -2.6   0.0         1   2.6e+03      98     109 ..     146     157 ..     134     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.8e-07
                EEEE--SSTTSSHHHHHHHHHHHHHTTT-.......-EEEEE--TT CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGa.......rvaaidldlr 40
                vi ++  kGG Gkst+av +a +L+ +         rv+++dld+ 
  CDO72425.1 19 VIAVASGKGGVGKSTVAVNLAFSLAMHAEhaprqrpRVGVLDLDIF 64
                899*********************9654322333337999999975 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
                 HH-SEEEEE--S CS
        MipZ  98 aeldfividtPG 109
                 +eld++vid P 
  CDO72425.1 146 SELDVLVIDMPP 157
                 68899****973 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.7e-07    0.0022      32      74 ..      17      56 ..       9      74 .. 0.77
   2 ?   -3.6   0.0       2.6   6.7e+03     137     150 ..     142     155 ..     117     155 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.7e-07
      AAA_25 32 agelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkV 74
                ++ +a+  G +g+GK+t+a++la+++a   ++ +     ++ +V
  CDO72425.1 17 KKVIAVASGKGGVGKSTVAVNLAFSLAmHAEHAPR----QRPRV 56
                56788999*******************54443322....33344 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
      AAA_25 137 ieevegvrlvviDp 150
                 +e   +++++viD+
  CDO72425.1 142 MEGGSELDVLVIDM 155
                 33334588888885 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6     2e-06    0.0052       5      28 ..      22      45 ..      17      49 .. 0.83
   2 ?   -0.2   0.1      0.18   4.5e+02     122     137 ..     145     161 ..     133     178 .. 0.76
   3 ?   -1.9   0.0      0.56   1.4e+03     210     244 ..     176     210 ..     168     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
                 EEEESTTSSHHHHHHHHHHHHHHT CS
  ArsA_ATPase  5 lvgGKGGVGKttvsaatavklsek 28
                 + +GKGGVGK+tv+  +a  l+ +
   CDO72425.1 22 VASGKGGVGKSTVAVNLAFSLAMH 45
                 458****************99976 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
                  CSSSSEEEEESBS.CCH CS
  ArsA_ATPase 122 eeeydvvvlDtaP.TGh 137
                  ++e dv+v+D +P TG+
   CDO72425.1 145 GSELDVLVIDMPPgTGD 161
                  6789********96775 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.56
                  EEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE CS
  ArsA_ATPase 210 rlVvipEklslkEteRaikeLkkygikvdavivNk 244
                  ++V++p  ++l + ++ ++ ++k+++ +  ++ N+
   CDO72425.1 176 VIVSTPQDVALTDVRKGVSMFQKVSVPIVGLLLNE 210
                  68999999999999999999999999998888886 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.1e-05      0.18       6      27 ..      24      45 ..      18      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.1e-05
   Fer4_NifH  6 yGkGGiGksttsqnlsaalaem 27
                 GkGG+Gkst + nl+ +la +
  CDO72425.1 24 SGKGGVGKSTVAVNLAFSLAMH 45
                5***************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2260.46
//
Query:       CDO72426.1  [L=1166]
Description: hypothetical protein BN946_scf184977.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-22   79.4   0.0    7.3e-22   78.2   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
    3.1e-20   72.6   0.0    1.2e-19   70.7   0.0    1.9  2  Helicase_C  Helicase conserved C-terminal domain
    4.1e-17   62.5   0.0    1.2e-16   60.9   0.0    1.8  2  DEAD        DEAD/DEAH box helicase
      0.003   17.3   0.0     0.0052   16.5   0.0    1.4  1  SWI2_SNF2   SWI2/SNF2 ATPase
  ------ inclusion threshold ------
      0.019   15.3   0.0       0.15   12.3   0.0    2.5  2  AAA_22      AAA domain
       0.19   11.7   1.7       0.46   10.5   1.7    1.7  1  PGA2        Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   2.5e-25   7.3e-22      23     169 ..      33     178 ..      15     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2.5e-25
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkkakekdstnkkilvttiqsldads 118
                   ++ l++++TG GKT++a  ++ +++++++  k++f++p+k l+ q +++  k+   + ++    +++vs+dk+++   +  +k+++ +t q+l +d+
  CDO72426.1  33 LFENTLVALPTGLGKTFIAGVVMLNYYNWFPDGKVIFVAPTKPLVAQQIDACHKTCGIPGSAaaeLTGNVSKDKRIN---AWRTKRVFYATPQTLLNDL 128
                 357899*******************************************9997776555444356888899999999...999**************** PP

                 ........HHHTTT-SEEEEETGGGTTS.TTTHHH....HHT---SEEEEEESS- CS
      ResIII 119 eeeeeeseellrdrfdviiiDEaHrlgakkswrei....lekfkeavllglTATp 169
                       + + +   + +i+iDEaHr +++ ++ ++    +++++++ +l+lTATp
  CDO72426.1 129 -----IQGHVDALDIVLIVIDEAHRGTGDYAYAQVvrfmMQHNPHFRILALTATP 178
                 .....99999999999************989999879999999***********9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   3.8e+03      40      96 ..      92     166 ..      63     171 .. 0.52
   2 !   70.7   0.0   4.1e-23   1.2e-19      16     110 ..     382     487 ..     363     488 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
                 TSTEEEESTTSTHHHHH..............HHHHHHHTTS...........SS.EEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C  40 gikvavlhgelpqnere..............eileqfnkge...........sd.vLiatdvaerGidipkvnlVinfdlprn 96 
                 g  +a l+g+ ++++r+                                    d vLi  d a rG        V++f ++ n
  CDO72426.1  92 GSAAAELTGNVSKDKRInawrtkrvfyatpqT--------LlndliqghvdaLDiVLIVIDEAHRGTGDYAYAQVVRFMMQHN 166
                 56666666666666666333333222222222........0222222223334557788888888776666666666666655 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 4.1e-23
                 TSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTT.........STHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C  16 ggkilifvntidrlek.vklllekk.gikvavlhge.........lpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                  +++++fv +++ +e+ v+ll++++  i++ ++ g+           q+e++e++eqf++g+++vL++t+++e+G+di +v+l++ +d+++++ ++ qr
  CDO72426.1 382 PSRAMVFVSFRECVEEiVELLNKESpIIRAKPFIGQgtdkqgkkgYAQKEQLEVIEQFKAGTYNVLVSTSIGEEGLDIGEVDLIVCYDAQKTPIRMLQR 480
                 57899*******998877888555577999999998889999999****************************************************** PP

                 HTTSSST CS
  Helicase_C 104 iGRtgRa 110
                 iGRtgR 
  CDO72426.1 481 IGRTGRK 487
                 ******6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   4.1e-20   1.2e-16       2     173 ..      23     182 ..      22     185 .. 0.84
   2 ?   -2.1   0.0      0.95   2.8e+03      48      94 ..     383     436 ..     238     466 .. 0.70

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4.1e-20
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 d+Q ++++  l  ++ lva +TG GKT ++ + +l+     +  +  k+++v+Pt+ L+ q+++ + k +   +  +  ++g+v++++ +++  ++ ++
  CDO72426.1  23 DYQYNIVKKSL-FENTLVALPTGLGKTFIAGVVMLNYY---NWFPDGKVIFVAPTKPLVAQQIDACHKTCGIPGSAAAELTGNVSKDKRINAW-RTKRV 116
                 67888888888.569********************776...479999***********************97676666778999999999999.99*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 +++tp+ l++ l +g+++  ++ ++V+DEa+r   +  + + ++ ++++          + ++++l+AT+ +++
  CDO72426.1 117 FYATPQTLLNDLIQGHVDALDIVLIVIDEAHRGTGDyAYAQVVRFMMQHN--------PHFRILALTATPGSKP 182
                 *********97778**9999999*********999945555555555555........4567*******98655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.95
                 -EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.........TSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
        DEAD  48 pkalivePtreLaeqtlnnlkkfkkyidlrvlliig.........gvaardqlskl 94 
                  +a++ +  re +e++++ l+k    i+  ++ +ig         g a+++ql+++
  CDO72426.1 383 SRAMVFVSFRECVEEIVELLNKESPIIR--AKPFIGqgtdkqgkkGYAQKEQLEVI 436
                 5666777777777777776666555433..33223322222222245555555555 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.7e-06    0.0052      28     162 ..      44     183 ..      30     227 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
   SWI2_SNF2  28 GSGKsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfak.ageekpkqaesrkeL..kelleke.sekiifttiqKfeeeekeklevlsereni 122
                 G GK++   +++ +  +  + + kv++v   k L  Q  +  +k +g   +  ae + ++   +++++  +++++ +t q + ++      ++++ + +
  CDO72426.1  44 GLGKTFIAGVVMLNYYN-WFPDGKVIFVAPTKPLVAQQIDACHKtCGIPGSAAAELTGNVskDKRINAWrTKRVFYATPQTLLNDLI--QGHVDALDIV 139
                 55666665555555555.566777777777777765544444441443333333333332003445332377777777777765422..3456666778 PP

   SWI2_SNF2 123 ivlvDEaHRsqyg....elakklrkalpnaafigFTGTPilkkd 162
                 ++++DEaHR   +    ++ + ++++ p+  ++++T TP +k +
  CDO72426.1 140 LIVIDEAHRGTGDyayaQVVRFMMQHNPHFRILALTATPGSKPE 183
                 8999*****9877667799999*****************87754 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.1e-05      0.15      13     102 ..      42     148 ..      37     213 .. 0.81
   2 ?   -0.9   0.0      0.61   1.8e+03      38      71 ..     750     792 ..     727     820 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
      AAA_22  13 esGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka...................erlsseell.ealeqalrar 89 
                 ++G GKT+ +  ++ ++ ++     ++ +v+fv ++++    + d +++ + + g+ + +                     ++ + ll ++++ +++a 
  CDO72426.1  42 PTGLGKTFIAGVVMLNYYNWF----PDGKVIFVAPTKPLvaQQIDACHKTCGIPGSAAAEltgnvskdkrinawrtkrvFYATPQTLLnDLIQGHVDAL 136
                 689999986655555553332....37788888888888666666788888888887777999999999999999988866777777779999999999 PP

      AAA_22  90 avielliiDEaqh 102
                 +  +l++iDEa++
  CDO72426.1 137 DI-VLIVIDEAHR 148
                 99.*********8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.61
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelka.........e 71 
                  +++v+ vt+p +  + +l+ +l++  +++lka         +
  CDO72426.1 750 LERSVIDVTAPDDAPRGSLAAMLFSSPERPLKAkqaaprsisR 792
                 678999*******************999999996555554441 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.7   0.00015      0.46      60     121 ..     610     668 ..     599     705 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
        PGA2  60 kkakvspnalRggeaksgesdedddegeeeed.vakasgvpewgkkarkrqkkvlkkleeeae 121
                 k++kv p++l  ++    + d+dd+e+e +     +++++++  ++a+k+ k++ ++  ++  
  CDO72426.1 610 KRVKVRPEELEHAD----QDDSDDEEIEAGVFaPRRTASTSAVPESAKKKTKALARSATTAGT 668
                 68899999998866....579999999999887788999999**************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 8088.09
//
Query:       CDO72427.1  [L=247]
Description: hypothetical protein BN946_scf184977.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1733.49
//
Query:       CDO72428.1  [L=431]
Description: hypothetical protein BN946_scf184977.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-11   44.4   0.1    2.6e-11   43.2   0.1    1.7  1  G-patch        G-patch domain
    3.5e-06   27.1   5.3    5.3e-06   26.6   5.3    1.3  1  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
      4e-05   23.9   1.6    6.2e-05   23.2   1.6    1.3  1  zf-met         Zinc-finger of C2H2 type
    0.00036   20.6   0.0    0.00036   20.6   0.0    2.5  3  G-patch_2      G-patch domain
      0.005   16.9   3.4     0.0082   16.2   3.4    1.3  1  zf-DBF         DBF zinc finger
     0.0059   16.9   0.6     0.0097   16.2   0.6    1.3  1  zf-C2H2_2      C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.078   13.1   0.4       0.13   12.4   0.4    1.3  1  zf-C2H2_aberr  Aberrant zinc-finger
       0.96   10.8   2.7       0.48   11.8   0.6    1.5  2  DUF393         Protein of unknown function, DUF393
          4    6.7  11.1        5.6    6.3  11.1    1.1  1  DUF4820        Domain of unknown function (DUF4820)


Domain annotation for each model (and alignments):
>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   1.3e-14   2.6e-11       2      43 ..      28      69 ..      27      71 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.3e-14
     G-patch  2 sniGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGlG 43
                +niG+ mL+kmGW +G+ LG +++G++ePi  ++k d +GlG
  CDO72428.1 28 NNIGFSMLAKMGWVEGSPLGISGEGRVEPIPFYVKNDLTGLG 69
                8**************************************999 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   5.3   2.6e-09   5.3e-06       2      24 ..     125     149 ..     124     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.6e-09
                  CBBTTTTBBBSSHHHHHCCTTS..H CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS..K 24 
                  fYC++C+K+F++  ++d+H +S  +
   CDO72428.1 125 FYCEVCEKQFQNVAQYDEHTNSyaH 149
                  9*********************444 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.6   3.1e-08   6.2e-05       1      22 [.     125     146 ..     125     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.1e-08
      zf-met   1 fyCelCnvtfnsesqlksHlqG 22 
                 fyCe+C ++f++ +q++ H ++
  CDO72428.1 125 FYCEVCEKQFQNVAQYDEHTNS 146
                 8*******************98 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.8e-07   0.00036      16      59 ..      29      72 ..      15      74 .. 0.92
   2 ?   -3.1   0.4       4.3   8.6e+03      33      50 ..      86     103 ..      83     106 .. 0.70
   3 ?   -1.7   0.6       1.6   3.1e+03      44      51 ..     170     177 ..     159     196 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
   G-patch_2 16 eFGaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGakp 59
                + G  +L  MGW eg + g +++grv+p+ +  + ++ GLG + 
  CDO72428.1 29 NIGFSMLAKMGWVEGSPLGISGEGRVEPIPFYVKNDLTGLGKTN 72
                67889************************************875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.3
   G-patch_2  33 igknkkgrvkpeepkrRp 50 
                 ++ +++  vk+ e++rR 
  CDO72428.1  86 RELDSERMVKETEEQRRQ 103
                 555666678889999986 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.6
   G-patch_2  44 eepkrRpg 51 
                 ee++rR++
  CDO72428.1 170 EEINRRKE 177
                 23333322 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.4   4.1e-06    0.0082       2      26 ..     123     150 ..     122     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
      zf-DBF   2 ksGYCEnCrvkfed...leeHlksekHr 26 
                 ++ YCE+C+++f++   ++eH +s  H 
  CDO72428.1 123 RPFYCEVCEKQFQNvaqYDEHTNSYAHH 150
                 689*********98333679****9996 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   4.9e-06    0.0097      38      82 ..     113     157 ..      85     168 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.9e-06
   zf-C2H2_2  38 glleylrekieekleClyCekefkslealreHmkkk.gHckineee 82 
                  + + ++  +   + C +Cek+f++++++ eH ++  +H+ki+ ++
  CDO72428.1 113 AVQSEISTVLRP-FYCEVCEKQFQNVAQYDEHTNSYaHHHKIRFRD 157
                 444455555555.99******************9972566776654 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   6.6e-05      0.13     141     170 ..     125     152 ..     112     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.6e-05
  zf-C2H2_aberr 141 iyCripGCgkrfkslmaYkYhckkflhslk 170
                    +yC++  C k+f+++  Y  h++ + h  k
     CDO72428.1 125 FYCEV--CEKQFQNVAQYDEHTNSYAHHHK 152
                    89998..********************876 PP

>> DUF393  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         9   1.8e+04      48      70 ..      86     109 ..      73     118 .. 0.53
   2 ?   11.8   0.6   0.00024      0.48       7      48 ..     127     175 ..     126     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9
      DUF393  48 eqldslllv.ieagrvysgsdAal 70 
                 ++lds+ +v + ++++ ++ +A++
  CDO72428.1  86 RELDSERMVkETEEQRRQREEAVA 109
                 455555444333333444444443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00024
      DUF393   7 CplCnravqflerrdrk.......grirfadlqsasgkallkelgidae 48 
                 C +C++  q + ++d++       ++irf+d+q a+ +++ +e +i+++
  CDO72428.1 127 CEVCEKQFQNVAQYDEHtnsyahhHKIRFRDMQAAQRASRNTEEEINRR 175
                 **************98778888889*******99999999888888854 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.1    0.0028       5.6      95     200 ..      76     186 ..      67     200 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0028
     DUF4820  95 dmvrfiQtrRrkLraikvrglkvkrlrkaeakseaeakkallkkirltLstliC...srpgrsip.....vsseldnsartlterksekesaesseskk 185
                  m++   ++Rr L + ++     ++ r++e  ++   + a+ ++i+  L+   C    +  + +      ++s + +  + +++ ++++ +a ++++++
  CDO72428.1  76 RMIETTVSQRRELDSERMVKETEEQRRQRE--EAVARRAAVQSEISTVLRPFYCevcEKQFQNVAqydehTNSYAHHHKIRFRDMQAAQ-RASRNTEEE 171
                 688888899****99999666666656666..444455566666777777777744355554444666755555555444444444444.444444444 PP

     DUF4820 186 rnkeerdaeseeess 200
                  n++++++ + ee++
  CDO72428.1 172 INRRKEKERKREEKE 186
                 444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1650  (0.0920297); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 2932.87
//
Query:       CDO72429.1  [L=793]
Description: hypothetical protein BN946_scf184977.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-41  139.7   0.1    1.9e-22   79.1   0.1    2.5  2  Bromodomain  Bromodomain
      6e-20   71.2   0.7    1.4e-19   70.0   0.7    1.7  1  BET          Bromodomain extra-terminal - transcription regul
  ------ inclusion threshold ------
      0.046   14.3   8.7       0.17   12.5   8.7    2.1  1  SPT6_acidic  Acidic N-terminal SPT6
       0.31   11.1   0.5        2.1    8.4   0.1    2.3  2  DUF1664      Protein of unknown function (DUF1664)
       0.67    9.7   8.8        2.5    7.9   8.8    2.0  1  DUF3381      Domain of unknown function (DUF3381)
        3.4    7.7   5.8        1.1    9.3   1.8    2.3  2  FlxA         FlxA-like protein


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   2.4e-19     7e-16       5      82 ..     234     325 ..     230     327 .. 0.90
   2 !   79.1   0.1   6.5e-26   1.9e-22       1      81 [.     444     529 ..     444     532 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 2.4e-19
                  HHHBHTTTCGGGGCSTT-GCC..STTHHHH.SS---HHHHHHHH............HTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain   5 lsellehklaepFlepvdpee..fpdyyavikkPldLstIkkkl............esnkYksladfeadlkllfsNarkyngegsviyela 82 
                  +++l++ k+a pFl pvdp     p y+++ik+P+d+st+++kl            ++  Y+s  +f ad++l+fsN+ ++ng++++i+++ 
   CDO72429.1 234 VRTLKKLKDAGPFLTPVDPVAlgIPHYPTIIKHPMDFSTVERKLassnpakpdpnpANPRYHSASEFIADIRLIFSNSLTFNGPDHPITQMG 325
                  5689999**********6665227******************99999999999999********************************9875 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 6.5e-26
                  HHHHHHHBHTTT...CGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHH CS
  Bromodomain   1 lekilsellehk...laepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyel 81 
                  +eki+++l +++   +a+pF epv   +   p+y+++ikkP+dLst+kkkl+ ++Y + ++f++d+kl+++N++++n++g++++e+
   CDO72429.1 444 CEKIWKDLHQKQhytIAHPFYEPVdpIKMGIPEYPKIIKKPMDLSTMKKKLDAGEYMNAEKFREDFKLMIKNCMTFNPPGNPVHEA 529
                  899**9988888889*********888999*****************************************************987 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.7   4.6e-23   1.4e-19       2      63 ..     648     709 ..     647     710 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 4.6e-23
         BET   2 mtyeeKkeLseeInkLpgeklgrvveIIqerepelqsdedEiElDidaldddtLreLekyvk 63 
                 +t+e+Kk Ls+ I+kL+g kl+rv++II+e  pe++++ +EiEl+id+l+ ++L +L+++v 
  CDO72429.1 648 LTFEQKKDLSDTISKLDGAKLERVIQIIHEGVPEIRDSTEEIELEIDQLPAAVLTKLYNFVI 709
                 7***********************************************************96 PP

>> SPT6_acidic  Acidic N-terminal SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   8.7   5.8e-05      0.17       2      50 ..     557     609 ..     554     657 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.8e-05
  SPT6_acidic   2 ssEEedddeeeerk..vregFIvdddeeeeeeeese.e.....eeekkrrkkkkkrr 50 
                  ++EEe+dd+e+er+    eg I d + + e+ ++ + +     +   +++kkk+k+r
   CDO72429.1 557 EEEEEEDDSEAERApsGIEGMIADMETQIENMKN-HlAslkrpK---EKEKKKEKKR 609
                  3344666666666511569*****8644333333.323453322...2222222222 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.44   1.3e+03      43      60 ..     578     595 ..     561     603 .. 0.61
   2 ?    8.4   0.1    0.0007       2.1      59     110 ..     651     700 ..     646     706 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.44
     DUF1664  43 vesvskqleqvseslaat 60 
                 ++++ +q+e+++++la+ 
  CDO72429.1 578 IADMETQIENMKNHLASL 595
                 344444444444444444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0007
     DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeav 110
                 ++k++Ls+ i ++d    + +++++ i+e v e+r+ ++ei+ +++++ +av
  CDO72429.1 651 EQKKDLSDTISKLDGA--KLERVIQIIHEGVPEIRDSTEEIELEIDQLPAAV 700
                 68***********974..44567777999******************99887 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.8   0.00083       2.5     102     155 ..     555     610 ..     536     613 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00083
                 .............X.XXXX..XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 102 eekeeeeeedeeee.eeeeeeaeeeel.deeeeiekeleelkeeekkkkKrekkka 155
                 ee+eeeee+d+e e + +  e    ++ ++ e+++++l++lk  ++k+kK+ekk++
  CDO72429.1 555 EEEEEEEEDDSEAErAPSGIEGMIADMeTQIENMKNHLASLKRPKEKEKKKEKKRE 610
                 22222222222212222222223333335556778888888888888888888886 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.8   0.00037       1.1      13      50 ..     572     608 ..     555     613 .. 0.75
   2 ?   -3.7   0.1       4.1   1.2e+04      36      55 ..     642     661 ..     635     662 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
        FlxA  13 sgsasqiasLqkQiknlqkqLkelsesdeltkeekkkq 50 
                 sg++  ia ++ Qi+n+++ L +l+  +e+ k+   k+
  CDO72429.1 572 SGIEGMIADMETQIENMKNHLASLKRPKEKEKKKE-KK 608
                 56777899999999999999999999944444422.22 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.1
        FlxA  36 lsesdeltkeekkkqqqliq 55 
                 ++++d lt e+kk   ++i+
  CDO72429.1 642 VTDDDVLTFEQKKDLSDTIS 661
                 67788999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1546  (0.086229); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 5069.36
//
Query:       CDO72430.1  [L=581]
Description: hypothetical protein BN946_scf184977.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-19   69.2  10.3    0.00053   20.7   0.2    6.6  6  WD40         WD domain, G-beta repeat
    1.4e-05   25.2   0.1       0.58   10.5   0.0    5.1  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.5e-05   24.9   0.1       0.28   11.0   0.0    3.5  3  eIF2A        Eukaryotic translation initiation factor eIF2A
    8.7e-05   21.6   0.2    0.00029   19.9   0.0    1.9  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
        0.3   11.6   1.6       0.57   10.7   0.1    2.3  2  LRV          Leucine rich repeat variant


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   3.6e-07    0.0013       6      38 .]     119     152 ..     114     152 .. 0.88
   2 ?    3.7   0.0     0.035   1.3e+02      12      29 ..     171     192 ..     160     202 .. 0.69
   3 !   20.7   0.2   1.5e-07   0.00053       6      38 .]     220     254 ..     215     254 .. 0.87
   4 !   11.9   0.0   8.9e-05      0.32      11      37 ..     276     302 ..     263     303 .. 0.81
   5 !   12.1   0.0   8.2e-05      0.29      12      38 .]     322     350 ..     311     350 .. 0.74
   6 ?    1.7   0.0      0.16   5.7e+02      18      31 ..     375     387 ..     363     398 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.6e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l+ H + v++l  +p+ga ++sGs D  +++Wd
  CDO72430.1 119 ILKDHtKVVSALTMDPSGARIVSGSHDYDCKLWD 152
                 678994448***************99*******9 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.035
                 S..EEEEEEETTSSE..EEEEE CS
        WD40  12 s..vtslafspdgaw..lasGs 29 
                 s  +++++fs dg+   ++sG+
  CDO72430.1 171 SyyIHDVKFSNDGQQflVVSGT 192
                 23599*********95435664 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.5e-07
                 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                   +GH    t++a++p  +  ++++s D t+riWd
  CDO72430.1 220 NTSGHvAELTACAWHPKDPQtFITSSVDSTIRIWD 254
                 558**8889****99999998779999*******9 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 8.9e-05
                 SSEEEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40  11 ssvtslafspdgawlasG.sdDgtvriW 37 
                 + v+++a+spdg+++  G + Dg +++W
  CDO72430.1 276 TKVNACAYSPDGSLI-GGaCQDGALHMW 302
                 459***********7.34458******* PP

  == domain 5  score: 12.1 bits;  conditional E-value: 8.2e-05
                 S......EEEEEEETTSSEEEE.EETTSEEEEEE CS
        WD40  12 s......vtslafspdgawlas.GsdDgtvriWd 38 
                 +      v+s+    dg+ +++ G+ D tv++Wd
  CDO72430.1 322 GtetgslVYSV----DGRTVLTrGG-DDTVKLWD 350
                 33444566777....****886599.*******9 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.16
                 EETTSSEEEEEETT CS
        WD40  18 fspdgawlasGsdD 31 
                 fspd+ ++++G   
  CDO72430.1 375 FSPDHGYIVTGA-G 387
                 9********985.3 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.72   2.6e+03      37      66 ..     123     152 ..     119     157 .. 0.87
   2 ?    3.2   0.0     0.031   1.1e+02      36      73 ..     169     206 ..     157     219 .. 0.82
   3 ?    4.1   0.0     0.016        58      38      75 ..     225     263 ..     215     272 .. 0.76
   4 !   10.5   0.0   0.00016      0.58      29      74 ..     266     311 ..     259     320 .. 0.81
   5 ?    0.2   0.0      0.27   9.6e+02      35      69 ..     319     353 ..     309     358 .. 0.86
   6 ?   -1.6   0.0      0.99   3.6e+03      59      91 ..     394     424 ..     389     441 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.72
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlld 66 
                  + + v++L   p+g  ++ + +d  ++l d
   CDO72430.1 123 HTKVVSALTMDPSGARIVSGSHDYDCKLWD 152
                  5677999**************999999977 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.031
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  + +  ++++++++dg+ + v+   ++ +l+d   +++ 
   CDO72430.1 169 AGSYYIHDVKFSNDGQQFLVVSGTTQAKLYDRDGEELA 206
                  56667999**********************97766654 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.016
  ANAPC4_WD40  38 dsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhs 75 
                    e ++ aW+p++ + +  +  d+++r+ d+e+++  ++
   CDO72430.1 225 VAELTACAWHPKDpQTFITSSVDSTIRIWDVEDKRKQKT 263
                  45678889*9976478888999**********9865554 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  v++ +e +   +v++ a++pdg+l+  a++dg++++ + +s  v  
   CDO72430.1 266 VVKSKERGARTKVNACAYSPDGSLIGGACQDGALHMWQTKSNFVRP 311
                  44457778889************************99988876655 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.27
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++++ e  sL ++ dg+       d +v+l d  s
   CDO72430.1 319 HAKGTETGSLVYSVDGRTVLTRGGDDTVKLWDLRS 353
                  567888889********************999765 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.99
  ANAPC4_WD40  59 dgevrlldaesgkvvhslsvksekavtclgWge 91 
                  +g++ +l+  + ++v+ l+v+s+   +++ W +
   CDO72430.1 394 KGHLLFLNKDTLETVKDLEVEST--PVKVYWHS 424
                  66777777777788888888877..67777764 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   7.8e-05      0.28      61      98 ..     173     208 ..     161     221 .. 0.85
   2 !    5.0   0.0    0.0054        19      63     160 ..     229     339 ..     214     352 .. 0.62
   3 !    4.8   0.0    0.0066        24     102     161 ..     370     432 ..     343     440 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.8e-05
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEE CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdlkvkviskl 98 
                  ihdv+ s+++++f+v+ G  +a  +l+d +++ ++++
  CDO72430.1 173 YIHDVKFSNDGQQFLVVSGTTQA--KLYDRDGEELATY 208
                 49*****************9876..5899888877765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0054
                 EEEEE-TTSS-EEEEESSSSCEEEEEECS..........CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT.....TTEEE..EEEE-T CS
       eIF2A  63 hdvaWspkskefaviyGkmpakvslfdlk..........vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk.....kkkki..akaeaa 144
                  + aW pk  +   i   +++++ ++d++          vk + +  + k N+  +sp g l+  a      G+l +w++k        +i  a+a+ +
  CDO72430.1 229 TACAWHPKDPQTF-ITSSVDSTIRIWDVEdkrkqktvivVKSKERGARTKVNACAYSPDGSLIGGA--C-QDGALHMWQTKsnfvrPSMSIegAHAKGT 323
                 5677888776654.4567888888888844556665544444444455677999999999887433..2.34888888887522111112211334445 PP

                 T--EEEE-TTSSEEEE CS
       eIF2A 145 natlvewspdgryvlT 160
                 ++ ++ +s dgr vlT
  CDO72430.1 324 ETGSLVYSVDGRTVLT 339
                 5566667777777766 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0066
                 S--EEEE-TTSSEEEEE-..TTSSS-EEEEEETTTTEEEEEEE-TT-.-EEEE-TTSSEEEEE CS
       eIF2A 102 krNtiffspkgklvllaG..fgnlaGeleiwdvkkkkkiakaeaana.tlvewspdgryvlTa 161
                 + N+if  ++g +v  aG   +  +G+l +++++++++++ +e + + ++v w+ + + +lT 
  CDO72430.1 370 QTNAIFSPDHGYIVTGAGatVKGGKGHLLFLNKDTLETVKDLEVESTpVKVYWHSKINQILTG 432
                 6788888888888877764468889*****************988764789999998888886 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.37   1.3e+03     184     217 ..     120     154 ..     113     195 .. 0.70
   2 !   19.9   0.0     8e-08   0.00029     127     216 ..     212     304 ..     162     315 .. 0.78
   3 ?   -3.1   0.0      0.81   2.9e+03     194     216 ..     329     351 ..     318     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.37
    Ge1_WD40 184 ieehslivea.afspdGtalatasedGevkffqvy 217
                 +++h+++v+a ++ p G+ +   s+d   k++   
  CDO72430.1 120 LKDHTKVVSAlTMDPSGARIVSGSHDYDCKLWDFG 154
                 56777666553788999999999999988888753 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 8e-08
    Ge1_WD40 127 CPyipeedaeesdddeaskllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsl.....iveaafspdGtalatasedGevkffqv 216
                  Pyi + +++  +++ a+ +    + +  + +  + + s  ++++++ ++++++++ ++++       +   a+spdG  +  a++dG ++++q 
  CDO72430.1 212 DPYIRDMKNT--SGHVAELTACAWHPKDPQTFITSSVDSTIRIWDVEDKRKQKTVIVVKSKERgartkVNACAYSPDGSLIGGACQDGALHMWQT 304
                 5777766653..344455555556777789999999*****************9999988743344559999*********************96 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.81
    Ge1_WD40 194 afspdGtalatasedGevkffqv 216
                 ++s dG ++ t   d +vk++ +
  CDO72430.1 329 VYSVDGRTVLTRGGDDTVKLWDL 351
                 5899**99999999999999975 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.9   6.9e+03       9      14 ..     510     515 ..     510     516 .. 0.85
   2 ?   10.7   0.1   0.00016      0.57       6      23 ..     532     547 ..     531     552 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
         LRV   9 rrPdlP 14 
                 +rPdlP
  CDO72430.1 510 HRPDLP 515
                 69***9 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
         LRV   6 aVArrPdlPpeaLerLah 23 
                  V+++  lP+eaL+ La+
  CDO72430.1 532 HVVQN--LPREALLKLAA 547
                 599**..*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4075.67
//
Query:       CDO72431.1  [L=173]
Description: hypothetical protein BN946_scf184977.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0039   16.6   0.0     0.0081   15.6   0.0    1.5  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime
  ------ inclusion threshold ------
      0.025   14.5   0.8      0.044   13.7   0.8    1.5  1  MAM33     Mitochondrial glycoprotein
      0.058   13.2   0.0       0.13   12.1   0.0    1.6  1  LpxD      UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltran


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-06    0.0081       2      29 ..      44      71 ..      43      83 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
      SRF-TF  2 IeneraRqvtFsKRrnGLfKKAsELsvL 29
                +en++aR+ t +KR   L+KKA  L v 
  CDO72431.1 44 VENPKARTRTHNKRARVLVKKAMALNVV 71
                79*********************99886 PP

>> MAM33  Mitochondrial glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   7.4e-06     0.044      93     152 ..      52     161 ..      11     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.4e-06
       MAM33  93 e....................................................eeesfpvrlsvtiekpgksggaLelectaqdgefvidnvsyykdae 139
                 +                                                      ++f  +l vt+ k+  ++ aL+   +a + +f+++ ++  k++e
  CDO72431.1  52 RthnkrarvlvkkamalnvvskpyllvycarpesvchkngiavtfisdnlkriVGADFIQNLHVTVMKG--THDALSTAQVALQTNFEVERLRREKEEE 148
                 15555566666666666666666666666666666666666666666666666678999**********..77************************** PP

       MAM33 140 lakeetaeadwkr 152
                  a    aea++ +
  CDO72431.1 149 TARRIAAEAQVDA 161
                 *****99998743 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.2e-05      0.13      14      55 ..      37      78 ..      29      86 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
                -TTCEEEE-SCCCGGGCCC---SEEEEEHHHHCCHTTSCS.E CS
        LpxD 14 gpgdlsFlanpkylkqlattkAgavivppdlaealpanaali 55
                g + l+F++npk + + ++ +A +++ ++ +++ +++ + l+
  CDO72431.1 37 GDNNLTFVENPKARTRTHNKRARVLVKKAMALNVVSKPYLLV 78
                5688***************99998776655555544554445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1326.26
//
Query:       CDO72432.1  [L=206]
Description: hypothetical protein BN946_scf184977.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1502.15
//
Query:       CDO72433.1  [L=177]
Description: hypothetical protein BN946_scf184977.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-16   59.2   0.0    8.4e-16   58.4   0.0    1.4  1  Rhodanese   Rhodanese-like domain
  ------ inclusion threshold ------
      0.085   13.1   0.0       0.34   11.2   0.1    1.9  2  Multi_ubiq  Multiubiquitin


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   9.4e-20   8.4e-16      14     106 ..      77     169 ..      64     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 9.4e-20
   Rhodanese  14 va..llDvRppeeYekghIpgAvnv.skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawke 106
                 ++  l+DvR+p+e  +g+Ip Avn+  +   +  + ++a+++e++   +++   ++++v++yc++g+r++ aa  +k+ Gy+n+ +++G++ +w e
  CDO72433.1  77 PDkyLIDVREPDEVVQGSIPSAVNLpLSVLSNALQLPPAEFKEKFGFEKPR---PNQEVIFYCRSGKRSTTAADVAKRNGYTNILNYKGSWLEWIE 169
                 3456*********************65555666788888888888888886...**************9999999999***99***********75 PP

>> Multi_ubiq  Multiubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.8e-05      0.34       6      38 ..      52      83 ..      52      94 .. 0.74
   2 ?   -1.3   0.0      0.31   2.8e+03      28      41 ..     126     138 ..     123     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.8e-05
  Multi_ubiq  6 NgrpfewpdpvitGreivalAgpdpaddpvvle 38
                ++ +++w++++it++e++    ++  +d  ++ 
  CDO72433.1 52 DDLQRDWDAKEITYEELKPKTLQPS-PDKYLID 83
                56799************98877777.4444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.31
  Multi_ubiq  28 pdpaddpvvleivt 41 
                 p+p +++v+++ + 
  CDO72433.1 126 PRP-NQEVIFYCRS 138
                 555.9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1120.83
//
Query:       CDO72434.1  [L=184]
Description: hypothetical protein BN946_scf184977.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-29  103.0   0.0    2.7e-29  102.7   0.0    1.1  1  Ctr       Ctr copper transporter family


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.5e-33   2.7e-29       2     148 .]      16     172 ..      15     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.5e-33
         Ctr   2 lFhwstddtilfrsWritskgqlagsciglfllaifyeflralrerlerewdrhl.a...rsrekrkaassplvdssssseeeaea............. 83 
                 + h++  d +lf++W+++skg++ag+cigl l+ai+ +++ a+r+ +e  w+r   +   ++++++  + + ++++++++     a             
  CDO72434.1  16 WLHFTSGDNLLFKTWHPSSKGAIAGACIGLALFAILERWVDAMRALAESHWRRSAlSlmsNEKNESPCHTADAFEQDKKA-----Aeveevkaaplpsh 109
                 8899999*********************************************9996233322222222222222222222.....12223345444332 PP

         Ctr  84 kstsslskseakksvrttpe....qqlirallyvvqvllaYilMLlvMtyNvglflavilGagvGeflf 148
                 +s + ++  ++             +++ r +ly++q+ll Y+lM++vM++++ +++++i+G+g+Ge+lf
  CDO72434.1 110 RSGHPARALRTIP------PfiasHDIPRGALYAFQALLMYALMMAVMSFQAAYIISIIVGLGIGEVLF 172
                 2222333333333......2555567*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1430.84
//
Query:       CDO72435.1  [L=226]
Description: hypothetical protein BN946_scf184977.g135 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.6   5.6       0.24   11.8   5.6    1.4  1  MGC-24    Multi-glycosylated core protein 24 (MGC-24), sialom
        0.8    8.0   6.1       0.95    7.8   6.1    1.0  1  DUF515    Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.6   2.7e-05      0.24      46     119 ..     142     221 ..     131     226 .] 0.51

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
      MGC-24  46 vnvtelcsaaskstpkptnstaktt..tkpsstttstsvatsgttnttvtptsqparkstFDaAsF.....iGGivLvLgv 119
                 +++++l+ a +++ p++++ t+ t+   +p+st+ + ++ t+++++ + + ts ++ +st +aAs      + Giv +Lg 
  CDO72435.1 142 YQCADLTLADNATIPSSVSCTNATNaaVTPVSTSVAPTA-TQTSPTGSGSSTSSAQPTSTSNAASStlvmgVSGIVGILGA 221
                 555566666666666555444333300334444433322.44444444455555555666666663222225677777775 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.1   0.00011      0.95     318     383 ..     156     224 ..     126     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00011
      DUF515 318 sssvs.eesstsssessstsespGdvsisds.ssasdsssvsqstseslsssisYsv.NLaeiLkAiaa 383
                  ssvs +++ +  +   sts +p  +  s + s +s+ss++  sts+++ss++   v  + +iL A+aa
  CDO72435.1 156 PSSVScTNATNAAVTPVSTSVAPTATQTSPTgSGSSTSSAQPTSTSNAASSTLVMGVsGIVGILGAVAA 224
                 444441334445556668999998776665415677788888899999*********99*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1460.49
//
Query:       CDO72436.1  [L=84]
Description: hypothetical protein BN946_scf184977.g136 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.018   15.2   0.2      0.019   15.1   0.2    1.0  1  Alpha-amylase_N  Alpha amylase, N-terminal ig-like domain
      0.032   13.1   0.3      0.037   12.9   0.3    1.0  1  XRCC4            DNA double-strand break repair and V(D)J rec
      0.045   13.6   0.0      0.046   13.6   0.0    1.1  1  SSFA2_C          Sperm-specific antigen 2 C-terminus


Domain annotation for each model (and alignments):
>> Alpha-amylase_N  Alpha amylase, N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   3.2e-06     0.019      38     110 ..       2      77 ..       1      83 [. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.2e-06
                      EEEEEETTS-.TTS--EEEEEEEEEE-SSEEEEEEEEE-TTS-EEEEEEEE-..TS.-EEEEESSEEESSHHHH.. CS
  Alpha-amylase_N  38 eliygdpyeweekwkseetemkkiasdelfdYweaeltlkkkrlrYlFelee..dg.eslvytekgfydekplddi 110
                      +l+++d+  we   ++   +++++ +del +   a ++ ++  + Y+F+l++  d  +++v+  +   +e++++++
       CDO72436.1   2 RLFHQDTEAWEVVDSKAVEPVSMYDEDELQELQVARVHDTTMHRTYMFDLKHaaDLpNAIVFARNKLLQEAAEKEY 77 
                      6899******88888888899*****************************98533323455555555555555533 PP

>> XRCC4  DNA double-strand break repair and V(D)J recombination protein XRCC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   6.1e-06     0.037      54     109 ..      17      72 ..       7      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-06
       XRCC4  54 rEAkdmemerekYvdeLrkalvleaeeaekykFdlskdeeesevlhlsyekklkdv 109
                 +  + + m  e  ++eL+ a v++++ + +y Fdl++    ++++ ++ +k l++ 
  CDO72436.1  17 KAVEPVSMYDEDELQELQVARVHDTTMHRTYMFDLKHAADLPNAIVFARNKLLQEA 72 
                 4445689999****************************************999986 PP

>> SSFA2_C  Sperm-specific antigen 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.7e-06     0.046      94     129 ..      18      55 ..       2      76 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.7e-06
     SSFA2_C  94 rssvlply.entlqelqvkr.rsLnlfrtqmmDLelsl 129
                   + +++y e+ lqelqv r +   + rt m DL  + 
  CDO72436.1  18 AVEPVSMYdEDELQELQVARvHDTTMHRTYMFDLKHAA 55 
                 333455683568*******956799*********8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 639.02
//
Query:       CDO72437.1  [L=407]
Description: hypothetical protein BN946_scf184977.g137 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-108  363.5   2.9    1.7e-60  205.4   0.2    2.0  2  V-ATPase_C  V-ATPase subunit C


Domain annotation for each model (and alignments):
>> V-ATPase_C  V-ATPase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.4   0.2   9.3e-65   1.7e-60       2     188 ..       8     198 ..       7     199 .. 0.98
   2 !  159.7   0.3   7.5e-51   1.3e-46     211     352 ..     198     341 ..     198     362 .. 0.89

  Alignments for each domain:
  == domain 1  score: 205.4 bits;  conditional E-value: 9.3e-65
  V-ATPase_C   2 wLisvpgektseqtleelnkalskkskn...selykfeipdlkvgtLDsLvalsddLgKldafvesvvkKvartlaevledqkdkleenllvngksles 97 
                 w++svp++++ e  ++el+++l ++sk    s++++++ip +k+gtLDsLv+ls++L K+daf++++v+K+++tl+++l+++ +kl++++lvn+++++ 
  CDO72437.1   8 WIVSVPETGDAEGLFHELSTKLCSSSKAvqpSNIAQLSIPTFKTGTLDSLVTLSEELPKHDAFFTATVAKTVDTLRNLLNNDPHKLAQHILVNEQPVDA 106
                 **********************9888777899******************************************************************* PP

  V-ATPase_C  98 Yltk.FqWdeakypvkqslkelvdiiskevtqidedlktksaaYnelksslqalerkktgnLltrsLadlvkkedfvldseyLttllViVpk 188
                 Yl + ++W+e +y v++sl+e+vd+++ke+t+id+ +k+k+++Yn +k++l +l+rkktgnL++rsL d+v++e+f+ dseyL+t+lV+Vpk
  CDO72437.1 107 YLLRgWSWNEGRYGVQRSLREMVDVLNKEMTSIDNVMKSKLNNYNLAKGALVQLQRKKTGNLSVRSLVDIVRREHFIRDSEYLETVLVAVPK 198
                 **888**************************************************************************************8 PP

  == domain 2  score: 159.7 bits;  conditional E-value: 7.5e-51
  V-ATPase_C 211 kklaeDneyaLftVtlfkkvveefkakarekkfivReFsydeeeleeekeeltkleaekkkqe..gelvrllkvnFsevfvawiHlkalrvFvEsvLRY 307
                 k++a+D++y Lf V++fk+v++ef +k+re+k+ivR+F+++ee+l++++eel+ + +++k+++  +el++l ++nFse+f++++Hlk++++FvEsvLRY
  CDO72437.1 198 KLIASDDDYSLFGVVIFKRVHDEFVQKCRENKYIVRDFTFSEEALDKQREELEAADTTEKELWrqTELLQLSRTNFSESFQILVHLKIIQLFVESVLRY 296
                 5799*********************************************************9844579******************************* PP

  V-ATPase_C 308 GlpvnFqalllqpekkkekklreeLnklfahldssakkgkvkkdd 352
                 Glp+++  ++++pe+k++k+  ++L+++fa+l+++a+ +k k ++
  CDO72437.1 297 GLPAHYIGFFIKPEPKTTKRTLAILQSQFAYLGGRANPDKAKGKS 341
                 *******9999999*********************7777655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2726.74
//
Query:       CDO72438.1  [L=1180]
Description: hypothetical protein BN946_scf184977.g139 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-45  154.3   0.0    1.2e-44  152.7   0.0    1.9  1  Urb2      Urb2/Npa2 family


Domain annotation for each model (and alignments):
>> Urb2  Urb2/Npa2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0   6.7e-49   1.2e-44       3     205 .]     951    1179 ..     949    1179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 6.7e-49
        Urb2    3 alevlesllskkpalfsqynveqtLslvstvlspssaeess...eifsalckllssilrhhrdklsgrfhlllavlqaLlellra............ 84  
                  ++e++ + +s++pa+++  ++ +++s++ +vl  ss +e+s   ++f+ ++++ls+++r++rd + + +++l  vl++L+++lr+            
  CDO72438.1  951 VVEFVVRQCSDRPASLRVADLPSLWSFIRSVLAGSSTHEHStdtAVFHGVVNILSALVRLRRDLVLNTLPHLGFVLRQLVSCLRSlrpqlggkqsrm 1047
                  567778889***********************99998888899999***************************************999999888877 PP

        Urb2   85 .......eetsgstelsakhAkalaRlltslceptvssv.....ssLtsetsslkkplgkhapllLvaYiklqle...ggiprevreaLepGiyail 166 
                         +  s s++l+a++ kalaRllt+l+++t  +v     +  +++ +sl +p++kha ++L+aY++++ +   + +++ +r +L+pG++a++
  CDO72438.1 1048 vmdtlprW-ISSSQPLGAQESKALARLLTTLTTKTMIRVhgagaE--SQKPESLMRPFSKHAAYVLTAYVEAVNDplcF-VSSGIRRELQPGLFALC 1140
                  77666554.699***********************9999*99552..6899************************9965.9**************** PP

        Urb2  167 dvlsqee.lrllnaaLdasgravfkeLykdYkkfgKwkgk 205 
                  d+l++++ ++++ +aLd +g+av+k+L+k+Y+k +++ gk
  CDO72438.1 1141 DMLGEHNrDAMMVSALDTGGKAVMKALWKEYEK-QRYVGK 1179
                  *******9*************************.***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 7722.67
//
Query:       CDO72439.1  [L=360]
Description: hypothetical protein BN946_scf184977.g140 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-60  203.8   0.0    6.6e-38  130.7   0.0    2.2  2  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.076   12.3   0.0       0.13   11.6   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   6.2e-24   5.6e-20       2      84 ..      40     122 ..      39     125 .. 0.96
   2 !  130.7   0.0   7.3e-42   6.6e-38     126     287 ..     123     275 ..     121     279 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 6.2e-24
                      -S-GGG----HHHHHHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHH CS
  Beta_elim_lyase   2 LlSDsvtkgteamsdaqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihf 84 
                      + SD++t +t+ m ++ ++a +Gd++Y e +t+ ++e+++a+++gke alf+p+Gt++n+i+l+++l q+ ++v++++++hi +
       CDO72439.1  40 FISDTITAPTPDMYAYASKASIGDAVYHE-PTTLAFEAHMARITGKEDALFLPSGTMSNQIALRTHLkQPPYAVLCDHRSHIVR 122
                      89*************************75.9999*********************************9*************986 PP

  == domain 2  score: 130.7 bits;  conditional E-value: 7.3e-42
                      -EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH....HH CS
  Beta_elim_lyase 126 ekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddeledyl 219
                       ++++isl++T n   G++ + ee+ ++++ a++ g+++hlDgAR++  a++ g ++ke+++ +Dsv+++l+K+l+a++G+ l++++d    ++
       CDO72439.1 123 SPTEVISLENTLN---GTIFPHEEIVRISEYAHRVGVKMHLDGARIWHVAAETGISIKELCAPFDSVSLCLSKGLGAPIGSCLVGQKD----FI 209
                      5799*********...************************************************************************....** PP

                      HHHHHHHHHHT---SSTHHHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT--EEECCGTTCCE CS
  Beta_elim_lyase 220 aerveqrkylggglrqagvlaaleagiraleeglaslerdhktaeqlaeklelvrlaiprrvytqehl 287
                      a+++++rk  ggg+rq g++ a  a+ +al+++  +l   h+ +++l ++l+++ + i  +v+t +++
       CDO72439.1 210 AKARWFRKLFGGGMRQTGFMTA--AAAYALTHNFPRLPAVHQLTKKLEAGLREIGVDIIGPVDTCMVF 275
                      **********************..***********************************999987766 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05      0.13      16      57 ..      62     103 ..      50     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.4e-05
                      SS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1  16 sgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLra 57 
                      ++ + ++p++ +FE+ +a+ +g++ a+ + sGt ++++aLr 
       CDO72439.1  62 GDAVYHEPTTLAFEAHMARITGKEDALFLPSGTMSNQIALRT 103
                      456677999*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2477.91
//
Query:       CDO72440.1  [L=74]
Description: hypothetical protein BN946_scf184977.g141 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-16   60.8   1.7    1.4e-16   60.3   1.7    1.2  1  zf-met2   Zinc-binding
    7.1e-09   36.4  10.0    7.1e-09   36.4  10.0    1.8  2  4F5       4F5 protein family


Domain annotation for each model (and alignments):
>> zf-met2  Zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   1.7   1.6e-20   1.4e-16       1      37 [.      36      71 ..      36      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.6e-20
     zf-met2  1 iCkiCrqtFmcTtkevlLkeHaenKHpKdtveeCFPg 37
                iC++CrqtF+ Tt+ ++L+eHa+nKH K+ ++eCFP+
  CDO72440.1 36 ICQTCRQTFLLTTRPPALEEHAQNKHGKT-MAECFPN 71
                8****************************.******7 PP

>> 4F5  4F5 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4  10.0   7.9e-13   7.1e-09       1      38 []       1      34 [.       1      34 [. 0.97
   2 ?   -0.3   0.2      0.23   2.1e+03      16      31 ..      54      64 ..      52      67 .. 0.49

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 7.9e-13
                ---SGGGTTTSTTT---SS...SS-SS-SS----TT-- CS
         4F5  1 MtRGnQRdqaRernqKKaaeqkgkgaksglkaaerale 38
                M++G++++q+Rern+ Ka    ++g ks+lk +++a++
  CDO72440.1  1 MGNGAKAAQKRERNAAKA----ASGPKSQLKVNQQAMN 34
                ******************....799***********97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
                --SS...SS-SS-SS- CS
         4F5 16 KKaaeqkgkgaksglk 31
                +++a++k      g++
  CDO72440.1 54 EEHAQNK-----HGKT 64
                5555554.....3344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 517.55
//
Query:       CDO72441.1  [L=97]
Description: hypothetical protein BN946_scf184977.g142 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-21   74.6   0.5      4e-21   74.4   0.5    1.1  1  zf-Tim10_DDP  Tim10/DDP family zinc finger


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.5   2.2e-25     4e-21       4      63 ..      22      82 ..      19      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 2.2e-25
  zf-Tim10_DDP  4 eqeqqvanaqelvnkltekCfkkCi.gkypgssLdsseesCldnCvdryldvsnlvskrlq 63
                  ++ q+++++++++n+l+++C++kCi ++y +++L+++e++C+d+Cv+++++v+++v++++q
    CDO72441.1 22 MATQELDMITDIFNRLVSSCHAKCIsPRYAEGDLNKGESVCIDRCVAKFFEVNKKVGEKMQ 82
                  7899*********************888*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 706.90
//
Query:       CDO72442.1  [L=699]
Description: hypothetical protein BN946_scf184977.g143 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-06   27.3  15.6       0.01   16.7   0.1    7.0  8  WD40         WD domain, G-beta repeat
    0.00015   22.0   0.1       0.12   12.7   0.0    4.5  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0064   16.4   0.0      0.015   15.2   0.0    1.5  1  BAT          GAF and HTH_10 associated domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2   1.2e+04      12      20 ..      23      31 ..      13      64 .. 0.75
   2 !    9.3   0.1   0.00038       2.3       5      36 ..     142     174 ..     138     176 .. 0.85
   3 ?   -0.2   0.2      0.38   2.2e+03      23      35 ..     230     242 ..     224     242 .. 0.86
   4 ?   -0.7   0.2      0.53   3.2e+03      21      38 .]     275     291 ..     260     291 .. 0.67
   5 !   16.7   0.1   1.7e-06      0.01       3      34 ..     297     329 ..     295     333 .. 0.90
   6 ?    3.7   0.0     0.022   1.3e+02       2      35 ..     358     406 ..     357     407 .. 0.82
   7 ?    1.2   0.0      0.13   7.8e+02      18      29 ..     517     528 ..     499     532 .. 0.78
   8 ?   -1.1   0.0       0.7   4.2e+03      14      36 ..     569     592 ..     557     594 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2
                SEEEEEEET CS
        WD40 12 svtslafsp 20
                 vt+l+f+p
  CDO72442.1 23 AVTALCFPP 31
                488888665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00038
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 rt++ + ++++s++ +p ++ la G++Dg+vr+
  CDO72442.1 142 RTISSQgGPIWSISPNPASTILALGCEDGSVRL 174
                 667777667************988999*****8 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.38
                 SEEEEE.ETTSEEE CS
        WD40  23 awlasG.sdDgtvr 35 
                 +wl++G s D ++r
  CDO72442.1 230 SWLVAGlS-DSSLR 242
                 79****88.99987 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.53
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 dg+ + sG+  g+v++Wd
  CDO72442.1 275 DGTIV-SGDSMGNVKFWD 291
                 55553.564468899998 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 1.7e-06
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 
                 +l+++ GH  +v +l  spdga + +++ D++v
  CDO72442.1 297 QLQSFQGHaADVLCLTISPDGAAVYTSGVDQKV 329
                 6899****999*************999999987 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.022
                 EEEEEEESSSSEEEEE.EETTSSE...............EEEEETTSEEE CS
        WD40   2 qclrtltGHssvtsla.fspdgaw...............lasGsdDgtvr 35 
                 +c r l  H +v++la ++p  ++               lasG+ D +v 
  CDO72442.1 358 TCSRRLHSH-DVRALAiWPPFTPLppshqrqfavdvapvLASGGLDMSVV 406
                 588888899.9****99777777777788888999999889999998885 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.13
                 EETTSSEEEEEE CS
        WD40  18 fspdgawlasGs 29 
                  s+dg+w+a ++
  CDO72442.1 517 ISDDGKWIAVSD 528
                 799****98654 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 0.7
                 EEEEEETTSSEE..EEEETTSEEEE CS
        WD40  14 tslafspdgawl..asGsdDgtvri 36 
                 +sl f pd++ l  a+++   tv i
  CDO72442.1 569 SSLLFTPDSSKLilATST-SSTVVI 592
                 577788999885224555.777776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2   1.3e+04      53      66 ..      54      67 ..      54      69 .. 0.87
   2 !   12.7   0.0     2e-05      0.12      36      90 ..     146     201 ..     133     202 .. 0.86
   3 ?    2.1   0.0     0.041   2.5e+02      52      88 ..     277     312 ..     227     315 .. 0.83
   4 ?   -2.4   0.0         1   6.2e+03      12      33 ..     455     480 ..     453     490 .. 0.71
   5 ?    0.1   0.0      0.17     1e+03      34      70 ..     561     598 ..     534     609 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
  ANAPC4_WD40 53 Lavaysdgevrlld 66
                 L+++ ++g+++l++
   CDO72442.1 54 LVIGRANGNIELCE 67
                 789999****9986 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.avtclgWg 90 
                  ++++ + s++ +p  ++La +++dg+vrl++    ++ h  + ++ k ++ ++ Wg
   CDO72442.1 146 SQGGPIWSISPNPASTILALGCEDGSVRLVSLLYDELTHLRRFDRVKsRILSIAWG 201
                  6778889999999*******************999999998888766589999996 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.041
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                   ++ + s g+v++ d+++ + ++s++ ++ + v cl+
   CDO72442.1 277 TIVSGDSMGNVKFWDSKTCTQLQSFQGHAAD-VLCLT 312
                  4677888999999999999999999988885.88876 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1
  ANAPC4_WD40  12 latedgellvfRlngqrvwtl....e 33 
                  la +   l++ R  g  vw +    +
   CDO72442.1 455 LAKKARLLMCTREAGLTVWRIaprqQ 480
                  56677778899999999999955332 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.17
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdg.evrlldaesg 70 
                   ++++s  +sL + pd + L  a+s + +v ++d+ s+
   CDO72442.1 561 LNGPSSGASSLLFTPDSSKLILATSTSsTVVIIDVGSA 598
                  55667778999999999988888887658999998765 PP

>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-06     0.015      56     110 ..     107     161 ..     101     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-06
         BAT  56 rdaaedldavedvrvvseeddgtlleltvsgpslastlaehGgtvrsaeaedgra 110
                 r+a e++++++++r+ s+++++ l+e+ ++  ++ +t++++Gg + s++ ++ ++
  CDO72442.1 107 RAAQEEIPSWSNLRLFSAGGGSELVEWDIERGCIKRTISSQGGPIWSISPNPAST 161
                 67889****************************************9999985554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5090.71
//
Query:       CDO72443.1  [L=211]
Description: hypothetical protein BN946_scf184977.g144 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-24   86.3   0.3    2.4e-24   85.3   0.3    1.5  1  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.3   1.4e-28   2.4e-24       1      62 []     128     189 ..     128     189 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.4e-28
  Mpv17_PMP22   1 gllegksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  g +eg+s+e+ik++ ++ + p+l+anw vWp+aql+nF+f+Pl +Rv+f ++++++W+ yLS
   CDO72443.1 128 GAMEGRSVEHIKQRYQDLYKPALIANWQVWPLAQLVNFRFMPLPYRVPFQSTCGVFWTLYLS 189
                  679**********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1722.39
//
Query:       CDO72444.1  [L=101]
Description: hypothetical protein BN946_scf184977.g145 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-07   29.4   0.2    4.3e-06   27.0   0.2    1.9  2  PTH2      Peptidyl-tRNA hydrolase PTH2


Domain annotation for each model (and alignments):
>> PTH2  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.036   6.5e+02      42      78 ..      25      59 ..       5      75 .. 0.70
   2 !   27.0   0.2   2.4e-10   4.3e-06       1      21 [.      81     101 .]      81     101 .] 0.98

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.036
                HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SE CS
        PTH2 42 llkeWeeegqkkivlkveseeeLlelaakakalglpa 78
                +l +W  ++++ +vl++++ +e +   +ka++  ++ 
  CDO72444.1 25 ALGAW--SSSEGTVLEAPNTNEVKPQPTKATDVDMSE 59
                46667..455667888888888877777777666655 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.4e-10
                 EEEEEEEESSSSS-HHHHHHH CS
        PTH2   1 lkmvlvvrkDLkmskGkiaaq 21 
                 +kmvlvvr+DL+m++Gkiaaq
  CDO72444.1  81 CKMVLVVRTDLGMTTGKIAAQ 101
                 7*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 770.29
//
Query:       CDO72445.1  [L=564]
Description: hypothetical protein BN946_scf184977.g146 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-45  154.4   0.0    4.4e-45  153.6   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    2.9e-25   88.7   0.0    1.8e-24   86.2   0.0    2.3  3  Helicase_C  Helicase conserved C-terminal domain
    5.5e-17   61.7   0.4    1.1e-16   60.8   0.4    1.5  1  DUF4217     Domain of unknown function (DUF4217)
    0.00036   20.6   0.0    0.00077   19.5   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
        1.9    8.9   9.4        4.9    7.6   9.4    1.8  1  PBP1_TM     Transmembrane domain of transglycosylase PBP1 at 


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0   1.2e-48   4.4e-45       1     175 [.      52     223 ..      52     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 153.6 bits;  conditional E-value: 1.2e-48
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t+iQ++aip +l g+dvl+aa+TGsGKTlaflip+++ + +   k ++g+ +++++PtreLa q++  +k+++ + + +   i+gg +++ +  kl++g
  CDO72445.1  52 TPIQEKAIPPLLAGKDVLGAARTGSGKTLAFLIPAVEMLHRLkfKPRNGTGIIVITPTRELALQIFGVAKELMAHHSQTFGIIMGGANRKGEEIKLQKG 150
                 89**********************************9998779999999*************************988777799*************9** PP

                 CSEEEEEHHHHHHHHH.CTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddlls.tgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 v+++++tpgrl+d+l+ t+ + ++++++lV+DEadr+l+ gf++++++i+n lp      k+ rq +++SAT +++v++
  CDO72445.1 151 VNLLIATPGRLIDHLEgTKGFVFKNLKCLVIDEADRILEVGFEEQMKKIINILP------KEGRQSMLFSATQTTKVTD 223
                 ***************54888*********************************5......45678*******9988876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.8     1e+04      15      35 ..      99     117 ..      88     157 .. 0.52
   2 ?   -1.3   0.0      0.75   2.7e+03       3      29 ..     196     221 ..     194     248 .. 0.76
   3 !   86.2   0.0   4.9e-28   1.8e-24       4     111 .]     264     370 ..     261     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.8
                 TTSEEEEEESSHH.HHHHHHHH CS
  Helicase_C  15 eggkilifvntid.rlekvkll 35 
                 +g  i+++++t++  l   +++
  CDO72445.1  99 NGTGIIVITPTRElAL---QIF 117
                 4445566666666433...222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.75
                 HHHHHHHHHHTTTTSEEEEEESSHH.HH CS
  Helicase_C   3 leallellkleeeggkilifvntid.rl 29 
                 +++++++l   +eg+++++f+ t++ ++
  CDO72445.1 196 MKKIINIL--PKEGRQSMLFSATQTtKV 221
                 56777887..789999999999987543 PP

  == domain 3  score: 86.2 bits;  conditional E-value: 4.9e-28
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 + l+ +l ++++++k+++f  ++++++   +ll  ++ +i v+ lhg+ +q++r  ++ +f + e+ +L++tdva+rG+dipkv+ ++++d+p+++++y
  CDO72445.1 264 LLLYTFL-KKNIKKKMVVFFSSCNSVKYhGELL--NFiDIPVLDLHGKQKQQKRTNTFFEFCNAETGILLCTDVAARGLDIPKVDWIVQYDPPDDPRDY 359
                 5678888.89****************7766666..6679**********************999999******************************** PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+r+GRt+Rag
  CDO72445.1 360 IHRVGRTARAG 370
                 *********97 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.4   2.9e-20   1.1e-16       1      61 []     410     470 ..     410     470 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 2.9e-20
     DUF4217   1 iqqkleslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 +q++le+l+ k++ l+ +Aq++++sy++aY+++++k i++v++Ldl ++ k+fG++ +P++
  CDO72445.1 410 VQSQLEKLLQKNYHLYRSAQDGYRSYLQAYASYSLKKIYDVNQLDLVKVGKAFGFSVPPRV 470
                 699********************************************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.1e-07   0.00077      28     168 ..      69     216 ..      49     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.1e-07
                 EEEESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH. CS
      ResIII  28 likmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadse 119
                 l ++ TG+GKTl   + ++e l++  k +      ++++ p+++l  q     k+++  + +  g ++ g ++k  + k ++  ++l++t  +l  ++ 
  CDO72445.1  69 LGAARTGSGKTLAFlIPAVEMLHR-LKFKprngtGIIVITPTRELALQIFGVAKELMAHHSQTFGIIMGGANRKGeEIKLQKGVNLLIATPGRLIDHL- 165
                 55678******9995555555554.4444578999***************8887777776666555544444444333558899**************. PP

                 .......HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---..SEEEEEESS CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke..avllglTAT 168
                    e ++ +  ++ ++++iDEa r+ +    +++++i++ +++     + ++AT
  CDO72445.1 166 ---EGTKGFVFKNLKCLVIDEADRILEVgfeEQMKKIINILPKegRQSMLFSAT 216
                 ...889999999999*********999766569999988886555555556676 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.4    0.0014       4.9      25      69 ..     484     533 ..     475     556 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
     PBP1_TM  25 asrrrrr....dddydd.eyddeedDdddddeeeevprkgkkkkpprkkr 69 
                 + ++r++    d+++++ +  d+edD + +d++e+  r+g++++++ ++ 
  CDO72445.1 484 SGKKRKHgdgsDEEWEEiDAVDKEDDSNAEDDDEQNVRHGRREQSKARRI 533
                 33444442233777777888899999998888888889989888555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 3814.94
//
Query:       CDO72446.1  [L=203]
Description: hypothetical protein BN946_scf184977.g147 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-38  130.2   0.3      1e-37  129.8   0.3    1.0  1  UPF0121   Uncharacterised protein family (UPF0121)
  ------ inclusion threshold ------
      0.083   12.9   5.9       0.09   12.8   0.2    2.4  2  NdhL      NADH dehydrogenase transmembrane subunit


Domain annotation for each model (and alignments):
>> UPF0121  Uncharacterised protein family (UPF0121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.3   1.2e-41     1e-37      67     234 ..       6     181 ..       4     186 .. 0.92

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 1.2e-41
     UPF0121  67 rlpqlrlsreylerllledsvhyLlysliFlfsaPvtlallPvflfallHaasytktlld............vlgsnslvvarllkvislvesqaeniL 153
                 +l++++ ++ ++ r+ll+++v+y+l ++ + fsaPvtlal+P+++f+l+Ha+++t+t l                 +  ++a+ l  + +v++++ n++
  CDO72446.1   6 SLGTPQPNAVWIRRALLDENVQYFLMAFFWWFSAPVTLALVPYAIFSLFHALTFTRTTLLpqflppgpppqpGAAPTPHPIAKKL--QVWVKANYDNAM 102
                 67888999999************************************************99********9554444555566666..9*********** PP

     UPF0121 154 rliAlieivlmpllivllllgkaslllpllYyqfLklRYsSrrnPytreafseLrvlletlanhpscPavirslieklial 234
                 r++A++e+v++  +i+ l+l  +sll+pl+Y++fL+ R+   ++  trea++ ++v + +++n+p  P+v+ + +  + +l
  CDO72446.1 103 RAVAFTELVILTRVIFGLFLRWNSLLTPLIYAHFLRQRWF--QSKFTREAVAYVDVRIRNFVNSPGKPPVLAQGYGYVTDL 181
                 ****************************************..*****************************9988776666 PP

>> NdhL  NADH dehydrogenase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.2     0.019   1.7e+02      38      58 ..      15      35 ..      13      55 .. 0.82
   2 ?   12.8   0.2     1e-05      0.09      15      52 ..     117     154 ..     103     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.019
        NdhL 38 RWyvaskiErlliymlvflfF 58
                 W ++  ++  ++y+l+ +f+
  CDO72446.1 15 VWIRRALLDENVQYFLMAFFW 35
                599999********9997764 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1e-05
        NdhL  15 aylalsvlYllviPlilylwlrkRWyvaskiErlliym 52 
                  +++   +  l+ Pli   +lr+RW++ ++   +++y+
  CDO72446.1 117 IFGLFLRWNSLLTPLIYAHFLRQRWFQSKFTREAVAYV 154
                 4445555667899***************9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1546.59
//
Query:       CDO72447.1  [L=98]
Description: hypothetical protein BN946_scf184977.g148 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.12   12.5   3.8       0.16   12.1   3.8    1.2  1  Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, ch
        2.1    7.9   8.1        2.5    7.6   8.1    1.0  1  DUF1700      Protein of unknown function (DUF1700)


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.8   1.8e-05      0.16      42      94 ..      27      85 ..      15      88 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
                 HHHHHHHH.HHHHHHHHHHHHHHHSST........HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Oxidored_q4 42 fylvallF.liFDvevvflfpwavslkel......glfgliemllFllillvglvYewkk 94
                 f ++  +F l+ D+ v +l   a ++ +       g++g++++ +F ++l+ gl+Y w +
   CDO72447.1 27 FAVFQAIFaLVQDLVVSVL-QLAQAFVSFvaglfqGAVGFVAANFFAIVLVGGLYYWWTH 85
                 5555555524444443333.3333333223335558899******************976 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.1   0.00028       2.5      78     148 ..      11      77 ..       2      81 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00028
     DUF1700  78 vskailavigLsllnlilvlipliviislvlsllvvalallvsplvllvksllkgfeelslnvfvsigllg 148
                 ++++ l++ig slln ++    ++  i++++  lvv+++ l+  +v  v++l++g   + +  f++i l+g
  CDO72447.1  11 LVES-LTAIGASLLNSVFA---VFQAIFALVQDLVVSVLQLAQAFVSFVAGLFQGAVGFVAANFFAIVLVG 77 
                 5544.577999***98774...44455566666777888889999999999**999999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 778.43
//
Query:       CDO72448.1  [L=937]
Description: hypothetical protein BN946_scf184977.g149 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-34  115.8   3.8      1e-09   38.7   0.0    4.6  4  CBS       CBS domain
      3e-14   52.3   0.7    6.6e-14   51.2   0.7    1.6  1  Sgf11     Sgf11 (transcriptional regulation protein)


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.8e-09   4.3e-05       8      52 ..     115     159 ..     108     162 .. 0.87
   2 !   38.7   0.0   1.1e-13     1e-09       1      52 [.     174     225 ..     174     230 .. 0.90
   3 !   22.8   0.0     1e-08   9.1e-05       6      53 ..     289     343 ..     282     346 .. 0.85
   4 !   27.7   0.2     3e-10   2.6e-06       3      47 ..     359     403 ..     357     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.8e-09
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 + +tvp++ t++ea +l + k+ ++++VVd+d+ l Gi+t +Dl+
  CDO72448.1 115 PALTVPENITVSEASQLCAAKRTDCVLVVDDDEGLSGIFTAKDLA 159
                 557**************889999******77777*********97 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 1.1e-13
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 V++imtr++++ + +t+  eal+lm++k++++lPV +e+g++vG++  + ++
  CDO72448.1 174 VSQIMTRNPMVTRDTTSATEALQLMVQKHFRHLPVCNEEGNVVGLLDITKVF 225
                 89*******88888888****************************9888765 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1e-08
                 BSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.....ETTT..BEEEEEEHHHHHH CS
         CBS   6 trdvvtvppdttleealelmrekgvsrlPVV.....dedg..klvGivtlrDllr 53 
                 ++++ tv p tt++++++lm+e++ ++++V+        g  k+ Gi+t +D++ 
  CDO72448.1 289 RTQPATVGPKTTVRDVAKLMKERRTTAVCVMepaapGQAGapKIAGIFTSKDIVL 343
                 56999***************888899****9999974455779**********85 PP

  == domain 4  score: 27.7 bits;  conditional E-value: 3e-10
                 HHSBSSCEEEETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEE CS
         CBS   3 dimtrdvvtvppdttleealelmrekg.vsrlPVVdedgklvGivt 47 
                  +mt+ + t+pp++t+++al++m   g +  lPVV+ dg+lv iv 
  CDO72448.1 359 RVMTPHPDTAPPTMTIHDALKKMYT-GhYLNLPVVEADGRLVAIVD 403
                 58*********************44.3588******9******995 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.7   7.3e-18   6.6e-14       2      33 .]     683     714 ..     682     714 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 7.3e-18
                 C-EEE-TTTSSEEEGGGHHHHHHHHCHHXXXX CS
       Sgf11   2 seyvtCpnCgRqiaasRFApHLekClgrgrrr 33 
                 ++y++C+ C+R+ia++R+ApHL+ C+g+g rr
  CDO72448.1 683 TAYFECLECKRPIASNRYAPHLSSCMGIGNRR 714
                 68***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 5943.47
//
Query:       CDO72449.1  [L=326]
Description: hypothetical protein BN946_scf184977.g150 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-07   28.5  21.4    1.3e-05   24.3  21.4    2.0  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3  21.4   7.5e-10   1.3e-05     120     334 ..      48     319 ..      19     326 .] 0.71

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.5e-10
       MFS_1 120 graigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllll...............peepperkrkspkeee.......... 188
                 + a+ + + + s+ +++g  +++l+++s+      W   +y   ++s++ + ++l  +                              +          
  CDO72449.1  48 MVAYVISAFARSFISAVGGFAAPLVCQSIVatgirWANFYYGSLVLSAVNISFILYAFwpieaelrtdaelawK--------------Llsatsdasda 132
                 444444444555555556666665554444455457777**********9653223333344443333333330..............24666677777 PP

       MFS_1 189 ........................................kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsgllla 246
                                                         +  +++ ++  +ka l++ + w ++l+al++++   s++  ++ +yl  v++ +   ++
  CDO72449.1 133 psseavepqspssaggtapvlgkasvlgprsthhsccmkgEANQQSDWSA-YKAALTHLQTWtSALFALIYTG-SESATQGFIVVYLLAVRNAN-PNTV 228
                 77777778888888888999999999999999999999999999999999.***********98888888886.8999****************.6777 PP

       MFS_1 247 glllallalvgailallagrlsdr...lgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeea 334
                 g++ + ++ ++a +++++g+l        r+++    +++ ++a+++ +l+ +  s +  +++ ++iG+ +g +fp+ la a dl+p+e +
  CDO72449.1 229 GYVTSGFWGGMALSRFIWGYLGSFitfRRRKWIVQACIVFPVIAFAMNLLILLVPSFIENAISTAVIGTVYGPIFPANLASARDLLPAELH 319
                 777777888888889999999977664344445555566666777777777777888999999999********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2285.16
//
Query:       CDO72450.1  [L=440]
Description: hypothetical protein BN946_scf184977.g151 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.005   17.0   0.1      0.012   15.7   0.1    1.6  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus
  ------ inclusion threshold ------
        5.9    6.3   6.1          1    8.8   1.9    1.8  2  Spo7      Spo7-like protein


Domain annotation for each model (and alignments):
>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.4e-06     0.012       8      72 ..     350     415 ..     344     426 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-06
     UPF0242   8 iiflYllPll.llaiysiqllseqksWs....llsiGlllaaaGsLlllllllkwekalkekleksklee 72 
                 ++f+Y l  + +l + + +++s  k W+    + +i+++l+++ s++++l++ ++ + lke++ k+k+++
  CDO72450.1 350 VYFVYKL--VkVLRFHNTETFS--KVWQtlstFSVIAIILLIITSVFAFLVMNNFGRGLKEQIAKNKTKQ 415
                 4555543..369**********..9**94443334899***********************776665544 PP

>> Spo7  Spo7-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.36   3.2e+03      25      51 ..     270     300 ..     264     310 .. 0.61
   2 ?    8.8   1.9   0.00012         1      23      87 ..     330     394 ..     325     402 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.36
        Spo7  25 rarrrkytlflll....Lalviafflyalfl 51 
                 +++  ++++fl l    L+++++f++  ++l
  CDO72450.1 270 KTMFAQHQIFLCLvkfdLFFWVGFSVQFIWL 300
                 5555677777765344456666666666555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00012
        Spo7  23 elrarrrkytlflllLalviafflyalflapredgsgvggsvywvvevvekvlliggvvTlvLfw 87 
                 + ++ ++    f++  a+ +++f+y+l    r +++++  +v  +++++  +++i  ++T v  +
  CDO72450.1 330 ARHESKWMMLSFMTGCAGAMVYFVYKLVKVLRFHNTETFSKVWQTLSTFSVIAIILLIITSVFAF 394
                 5667899999******************999**99999999999999*************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3058.89
//
Query:       CDO72451.1  [L=670]
Description: Glycoside Hydrolase Family 78 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-13   49.7   0.3    1.5e-12   47.4   0.1    1.9  2  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
    1.3e-09   37.7   0.3    1.6e-08   34.3   0.0    2.7  3  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do
  ------ inclusion threshold ------
      0.011   14.6   0.1      0.042   12.8   0.1    1.7  1  GDE_C            Amylo-alpha-1,6-glucosidase
      0.023   14.7   0.0      0.055   13.5   0.0    1.7  1  Bac_rhamnosid    Bacterial alpha-L-rhamnosidase concanavalin-
      0.038   14.2   0.3          3    8.2   0.0    2.8  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.13   4.8e+02       3      22 ..     183     202 ..     181     208 .. 0.84
   2 !   47.4   0.1   4.3e-16   1.5e-12      21     253 ..     232     462 ..     227     469 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.13
                      -EEEEES-HHHHHHHHHHHH CS
  Bac_rhamnosid6H   3 tgsfecsdpllnrlhenvlw 22 
                       g+f+++d+ lnr++ +  +
       CDO72451.1 183 SGWFHSNDEQLNRIWYAGAY 202
                      59*************87665 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 4.3e-16
                      HHHHHHTBSSSB-S-SSSS----BHHHHHHHHHHHHHHB--HHHHHHHHHHHHHH--TTS--BSBSS--TT--B--TTTTTHHHHHHHHHHHHH CS
  Bac_rhamnosid6H  21 lwsvrsnflgvptDCPqrdErlgWtgdaqlfaptasylydveaflekwlrdladeqrengavptvaPevlgalsetaeWadaivivpwelyety 114
                      l+++  n  +  tD+ +r  rl W gd+++ +p+ + +      +++ l+ l   q ++g++p+      + +  + +    ++i + +ly ++
       CDO72451.1 232 LNTTITNGTSALTDGAKR-DRLVWSGDMSIAVPGIALTTSDLISVRNALDSLFVLQSPTGMLPYAGYPFNERGLVSFTYHLYALIGVANLYLYS 324
                      677888999*********.9**************99999999999*******************665555999999****************** PP

                      --HHHHHHHHHHHHHHHHHHHHTSBT.TB.--S-S--STT.....-SS----HHHHHHHHHHHHHHHHHHHHHHTTS..--HHHHHHHHHHHHH CS
  Bac_rhamnosid6H 115 gDkeilkkqYesmkryldylkqrsddgleelskfqlgDWldpeardgaaktekalvataylvrslklvakiaellgkeedakkyaalaeelkaa 208
                      gDk++l++++++ kr +++ + + d+     + ++  DWl    r g     +++ a+  l+++l+l   +a+  g+  +a++ya+ a ++++a
       CDO72451.1 325 GDKAFLHEKWTAWKRGMEWATAQIDS-TGLANVTAPNDWL----RFG--MGGHNIEANSILYYTLSLGVALATDEGEYTTAAQYAQIASRIQQA 411
                      ************************99.3446788889***....222..33344448999999999999************************* PP

                      HHHHHB.-TTS......-BTT--HHHHHHHHHTT-S-GGGH.HHHHHHHHH CS
  Bac_rhamnosid6H 209 fnkkyldsetg......svandtqtanalpLafglvpeaeraakvaerlvk 253
                          +++++ g      +++   q  na + + gl+ +a++ +++ ++l++
       CDO72451.1 412 AVPLLWQPSVGlfrdneTTTLAPQDGNAWAVKSGLITNASQITAISQALEA 462
                      ******999996554444444449999999999999999998888877765 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.43   1.5e+03      24      42 ..      85     103 ..      77     109 .. 0.79
   2 ?   -1.2   0.0      0.49   1.7e+03      31      53 ..     130     152 ..     128     158 .. 0.81
   3 !   34.3   0.0   4.3e-12   1.6e-08      11      70 ..     573     631 ..     563     634 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.43
                      EEEEEEEETTEEEEEEEEE CS
  Bac_rhamnosid_C  24 svkasfeslyGkikvdWkr 42 
                      +v+ ++ s+ G+i + ++ 
       CDO72451.1  85 WVNLNVSSPTGSIGITFSE 103
                      8999999999999888765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.49
                      ETTEEEEEEEEEETTEEEEEEEE CS
  Bac_rhamnosid_C  31 slyGkikvdWkredgkftlnvsv 53 
                      s+ G ++  W +e+g f++   v
       CDO72451.1 130 STPGHYEAPWDKERGAFRYLTVV 152
                      566999999********987666 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 4.3e-12
                      EEEE----BTTB-EEEEEEEETTEEEEEEEEEETTEEEEEEEE-TT-EEEEEEE-SSGGG CS
  Bac_rhamnosid_C  11 kiviaPkpggdlksvkasfeslyGkikvdWkredgkftlnvsvPanttaeVvLpgekeek 70 
                      +++iaP+ g+ l++v++ f + +Gk++++W+ ++ +f+l++s P +t+ +V +p  +++ 
       CDO72451.1 573 TWTIAPQLGD-LTHVDTGFSTSKGKFSSKWTTSGTTFSLSISTPKGTKGTVGIPLPANQN 631
                      799****998.*******************************************988765 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.2e-05     0.042      34     218 ..     254     421 ..     237     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
       GDE_C  34 WGRDtfIaLsGllLvtgrfeeAreillt.FaktlrhGliPNlldegqealyntvdaslwlieaiekYleyagdaeilrriypvlqeilqkyvqGtky.k 130
                 W  D  Ia++G++L+t      r+ l + F  +   G++P +    +e   ++    l+ +  + + + y+gd+++l++ +        ++ +G+++ +
  CDO72451.1 254 WSGDMSIAVPGIALTTSDLISVRNALDSlFVLQSPTGMLPYAGYPFNERGLVSFTYHLYALIGVANLYLYSGDKAFLHEKWT-------AWKRGMEWaT 345
                 999***********************764889999******99999999999***************************998.......7888888855 PP

       GDE_C 131 igldeedglisagerlnqlTWmDakvkgepvtPRdGkaveinaLwyaaLkileelaekalgeakkssykelaekikesfekkFwdeaa 218
                 +++d ++gl +  +   ++ W+  ++         G  +e n++ y +L++   la+++ + +++ +y+++a++i++      w+++ 
  CDO72451.1 346 AQID-STGLANVTA---PNDWLRFGMG--------GHNIEANSILYYTLSLGVALATDEGEYTTAAQYAQIASRIQQAAVPLLWQPSV 421
                 7888.999999888...7778877765........66799999999999999999998877799999999999999987777777655 PP

>> Bac_rhamnosid  Bacterial alpha-L-rhamnosidase concanavalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.055       6      38 ..      72     103 ..      68     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                    TEEEEEEEEEEEEEEEEEE---TT-EEEEEEES CS
  Bac_rhamnosid   6 gttvlDlGqnlaGvirlkvkgeeGtevklrfgE 38 
                    + + +D+G+n+aG++ l+v+ ++G+ + + f+E
     CDO72451.1  72 SSATYDFGKNIAGWVNLNVSSPTGS-IGITFSE 103
                    56779****************9995.5666655 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.032   1.1e+02      28      77 ..     585     634 ..     570     637 .. 0.84
   2 ?    8.2   0.0   0.00084         3      35      54 ..     648     667 ..     639     670 .] 0.90

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.032
  CarboxypepD_reg  28 tvastttdadGafrlrglpp.gtysvtvsapGyatatreevtltagqtttl 77 
                       v +  + ++G+f+ +  +  +t+s+ +s p     t+ ++ l a+q++tl
       CDO72451.1 585 HVDTGFSTSKGKFSSKWTTSgTTFSLSISTPKGTKGTV-GIPLPANQNKTL 634
                      5778899*******987777999**************9.7*****999886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00084
  CarboxypepD_reg  35 dadGafrlrglppgtysvtv 54 
                      d++G+++++gl  g+y+ +v
       CDO72451.1 648 DSTGRYWISGLSGGEYEFVV 667
                      89**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4736.51
//
Query:       CDO72452.1  [L=147]
Description: hypothetical protein BN946_scf184977.g153 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.04   13.6   0.1      0.053   13.2   0.1    1.1  1  Use1           Membrane fusion protein Use1
       0.15   11.9   1.0        0.3   10.9   1.0    1.4  1  Synaptobrevin  Synaptobrevin


Domain annotation for each model (and alignments):
>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.9e-06     0.053     173     241 ..      73     142 ..      59     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-06
        Use1 173 rnLKenslaasqiikkDtetlsksekaadqnlaslkkeserleeh.skskvkcllwlllfvvlvvFismv 241
                 + LK+ +  +++ +++ t  ls++  a  +    l+    r+++  +++ +++l  +++ ++++ F+ +v
  CDO72452.1  73 KILKDITIGIGNEVRDSTIQLSQMNDAFAETSGILSGTFRRMNNMaARQGCRWLWYIVFLIIVFWFFIIV 142
                 5689999999999*******************************76999999865555444444444444 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   3.3e-05       0.3      36      86 ..      86     144 ..      82     146 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
                    HCCCCHHHHHHHHHHHHHHHHHHHHHH.HHTX.......XXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  36 LvdktenLqssaqqFkkqarklkrkmw.wknm.......kliiililvvlililiiiiv 86 
                      d t +L+++ ++F +++  l  ++  ++nm        l+ i++l++++ ++ii+++
     CDO72452.1  86 VRDSTIQLSQMNDAFAETSGILSGTFRrMNNMaarqgcrWLWYIVFLIIVFWFFIIVWW 144
                    66888899999999999998887665424555777777545667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1030.24
//
Query:       CDO72453.1  [L=557]
Description: hypothetical protein BN946_scf184977.g154 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-38  130.7   0.1    6.8e-38  130.7   0.1    1.7  2  Peptidase_C48   Ulp1 protease family, C-terminal catalytic do
  ------ inclusion threshold ------
       0.68   10.1   7.1        1.5    9.0   7.1    1.6  1  DUF3347         Protein of unknown function (DUF3347)
        2.9    8.6   6.8       0.86   10.3   0.9    3.0  2  HTH_32          Homeodomain-like domain
        5.3    7.0   5.3         14    5.7   5.3    1.6  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3         1   4.6e+03      46      71 ..     167     192 ..     155     207 .. 0.44
   2 !  130.7   0.1   1.5e-41   6.8e-38       1     205 [.     362     545 ..     362     552 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1
                    ......SS.......TCHCHHHCTTC CS
  Peptidase_C48  46 dfkknkskkkfkeskkkdlyngvrrw 71 
                    ++kk+ +++    +++k+ ++  ++ 
     CDO72453.1 167 SIKKYIEREHIHAKQHKARVQEEKKR 192
                    33333333333333333333333333 PP

  == domain 2  score: 130.7 bits;  conditional E-value: 1.5e-41
                    ---BHHHHHHHHHHHHHHHHH........CCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCCS..-GGG-SEEEE CS
  Peptidase_C48   1 ewlndtvidfylkllaerles........seskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyi 88 
                    +wlnd++i+fy +l+ +r e+         ++k  + h+++tff skL+      ++              + +++++wt+k    d+f+kd+i+i
     CDO72453.1 362 QWLNDEIINFYGQLILTRAEEskenppkkGSKKPLNAHYFSTFFWSKLK------GQ------------GYQKARMSKWTKKI---DIFSKDVILI 436
                    7***************999986432221112455689************......22............2334799*******...********** PP

                    EEEC.TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTH CS
  Peptidase_C48  89 PinedgkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaega 184
                    P+n ++ HW +++in ++k+i+ +DS++  +      ++++ l++yL ee  +kk+k +d t ++  +l  +pqq+n++DCG+++++f+e l++g 
     CDO72453.1 437 PVNHNNAHWTAAAINFRKKRIESYDSMGMERG-----QVFKLLRQYLDEEHRDKKKKPFDFTGWQDYTLPDTPQQENGYDCGVFTCQFLEALSRGE 527
                    ********************************.....*********************************************************99 PP

                    HCHHHHHSS.HHHHHHHHHHH CS
  Peptidase_C48 185 pqessvtltekdvdsfrkkla 205
                    ++     +t+ +++++r+k+ 
     CDO72453.1 528 EDFP---FTQDNMPYLRRKMV 545
                    8886...999*******9986 PP

>> DUF3347  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.1   0.00034       1.5      41     129 ..     116     220 ..      70     235 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00034
     DUF3347  41 e.................eeeekdeklke.vlesYlklkdALvaddakeakkaakkleeklkavdtsklkekekkelkeiseelkekaekiaeskdiee 121
                 +                 ++++++++l++ v+++Y ++  AL+++ + + k+  k +e++  +   ++ k++ ++e k  +ee++++++++ + k  + 
  CDO72453.1 116 KvsglhgdtrsaglmsppSTQASESSLRSaVTQQYPEVGAALAETAQRRQKSIKKYIEREHIHA--KQHKARVQEEKKRTREEMEKDLKELYHIKRSAG 212
                 012222222222222233223344444446******************9999999999875555..666777777778888888888888888888899 PP

     DUF3347 122 qReaFkkl 129
                  R++F+++
  CDO72453.1 213 FRSDFESF 220
                 99999876 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.35   1.6e+03      37      56 ..     168     186 ..     116     210 .. 0.67
   2 ?   10.3   0.9   0.00019      0.86       5      71 ..     300     357 ..     298     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.35
      HTH_32  37 iiallreeprWsprqlaarl 56 
                 i++ + e+ + +++q  ar+
  CDO72453.1 168 IKKYI-EREHIHAKQHKARV 186
                 33333.22255555555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00019
      HTH_32   5 wlkRyneeGle.gLkdrprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyr 71 
                   +R ++e +e  L+++ r++ p  l++e +a++ al  ++ +   +++a++       +vSh+ + r
  CDO72453.1 300 LAQRAKDEEIEqRLRPK-RKPLPTSLPPEDEAEVDALF-RK-KGVISKIARE-------QVSHEDISR 357
                 55777777777777777.3335558*************.55.5577778873.......488888887 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.3     0.003        14      78     209 ..      71     222 ..      68     236 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.003
                     HHHHHHH-S-S---HHHHHHHTTHHHHHHC--------------...................-------------------------------- CS
  Neur_chan_memb  78 Vlnvhhrsprthtmpawvrkvfldklprllfmkrpsevkdnekkl..................ssgasseaeelilskskseskkaklseeqgse 154
                     V n+h+r+++++++ a   + +l k   +    + s++k+  ++                   s++as+++ +  ++++ +e+ +a  ++ q  +
      CDO72453.1  71 VRNIHQRTQSHQSVGASQSRPILSKYASMQANAVASTSKNTLEASkvsglhgdtrsaglmsppSTQASESSLRSAVTQQYPEVGAALAETAQRRQ 165
                     78999999999999999999999888888888887777777666678888888887777766522222233333333333333222222222222 PP

                     ------SS---TTGGG--.......-----TTTTTHHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 155 kastckckckegeeaspstqlsk..eelspelkkavegvkyiadhlraededksvke 209
                     k+ ++ +++++ ++++++++ ++  ++  +e++k +++  +i+++   +++++s + 
      CDO72453.1 166 KSIKKYIEREHIHAKQHKARVQEekKRTREEMEKDLKELYHIKRSAGFRSDFESFRS 222
                     222222222222222222222223366666666666666666666655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1588  (0.0885716); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 3557.85
//
Query:       CDO72454.1  [L=436]
Description: hypothetical protein BN946_scf184977.g155 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-47  162.3   0.0    1.9e-47  161.8   0.0    1.2  1  Pkinase         Protein kinase domain
    2.3e-26   92.6   0.0      3e-26   92.3   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0013   18.7   0.0     0.0045   17.0   0.0    1.7  2  APH             Phosphotransferase enzyme family
     0.0027   17.1   0.0     0.0041   16.5   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.063   12.0   0.0      0.099   11.4   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0   5.4e-51   1.9e-47       2     259 ..      21     280 ..      20     284 .. 0.84

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 5.4e-51
                 EEEEEEEEESSEEEEEEEETT.....TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   2 ekleklGeGsfGkVykaveke.....tgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgs 94 
                 + l+ +G+G++G+Vy+av+ +     ++   A+K+i+k  ++k++  +v+rEi++   +  hpniv+l ++fe+ +++y++l++ +gg+l++   +kg+
  CDO72454.1  21 QLLRLIGSGTYGVVYQAVDLHpsadpESLYRAIKIISKIGRTKSQIGAVRREIALQSLVAgHPNIVTLCDAFEDAEYFYIILDFYRGGDLFEQCCEKGT 119
                 67899*************8652222144567**************9************99*****************************9999887666 PP

                 ..--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCB.SHHHHHHHHHH CS
     Pkinase  95 ..lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvl....keney.skkvDvWslGv 185
                   +++e ++k + +++ +l+ +H+++i HrDlKpeN+L++e+g  + ++DFGla++       +  +gt  Y++PE +    + +++  + +D+W+lGv
  CDO72454.1 120 yvFNDELLRKAFVSLVDALQACHDAKIYHRDLKPENVLVSEDGSeVYLADFGLATNRVIVD--EFGCGTTIYMSPECIgretGFKPFcARFSDIWALGV 216
                 579*************************************88888*********9988865..778************85433377778899******* PP

                 HHHHHHHSS-STTTSSHHHH.HHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 186 ilyelltgkppfsgekgkek.vekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                 il+++++g++p++  + ++  +++ +++           ++ l     ise a d+l+++++ +p +R+t  el 
  CDO72454.1 217 ILVNMISGRHPWERATMDDYcFSHFVHD----------PDFLL-DVLPISEGACDILQSMFALNPLTRPTLPELR 280
                 *************444443202222222..........23332.33457*********************99875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   8.2e-30     3e-26       2     257 ..      21     281 ..      20     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 8.2e-30
                  EEEEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg.ekekkevkVavKtl.keeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  +l + +G+G++G V+++   + + + +++  a+K++ k + t+++  ++ +e+++ + +  hpniv l  +  ++e  +i++++ +gGdL +   +k 
   CDO72454.1  21 QLLRLIGSGTYGVVYQAVDLHpSADPESLYRAIKIIsKIGRTKSQIGAVRREIALQSLVaGHPNIVTLCDAFEDAEYFYIILDFYRGGDLFEQCCEKG 118
                  57789***********986655999999*******9556788888999999***999999********************************999997 PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.....EEHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.....ftsksDv 188
                  +  ++ + l +  + + ++++  ++ k+ Hrdl   NvL+se+   v ++DfGLa +        ++e +     +m+pE++ +++     +   sD+
   CDO72454.1 119 TYVFNDELLRKAFVSLVDALQACHDAKIYHRDLKPENVLVSEDGsEVYLADFGLATNR-----VIVDEFGCGTTIYMSPECIGRETgfkpfCARFSDI 211
                  88888888889999***************************97659*********988.....677777778888*******9999989988999*** PP

                  HHHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypgl..kneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  W+ Gv+l  +++ g++p+++   ++  + +++++   l     ++e   +++++ ++ +p  Rpt+ el++
   CDO72454.1 212 WALGVILVNMIS-GRHPWERAtmDDYCFSHFVHDPDFLLDVLPISEGACDILQSMFALNPLTRPTLPELRK 281
                  ************.****98763256667888999999999999**********************999976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.37   1.3e+03      37     108 ..      69     144 ..      58     147 .. 0.80
   2 !   17.0   0.0   1.2e-06    0.0045     166     199 ..     144     176 ..     121     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS........HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr........klsaaqlpellealgeflaalhqv 108
                 +rre al  l+a++    P ++ ++   e++++ + ++ +  g +l +          +++ l++++  l+++l a h++
  CDO72454.1  69 VRREIALQSLVAGH----PNIVTLCDAFEDAEYFYIILDFYRGGDLFEqccekgtyVFNDELLRKAFVSLVDALQACHDA 144
                 67888888888888....78888899999999999999998888888888888887777888888888888888888876 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.2e-06
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 + + H+Dl+p N+lv +d+ +v ++ Df++a+  
  CDO72454.1 144 AKIYHRDLKPENVLVSEDGSEV-YLADFGLATNR 176
                 6688************888888.********975 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0041     107     173 ..     113     177 ..     106     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
         Kdo 107 dllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrl 173
                 ++++k+   +++el r+ +  +  + +  h+a+++H+dl + n+l+ +++    e++l D+  a +r+
  CDO72454.1 113 QCCEKGTYvFNDELLRKAFVSLVDALQACHDAKIYHRDLKPENVLVSEDG---SEVYLADFGLATNRV 177
                 56666555666666666666777788999******************998...99*****98887776 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05     0.099     310     382 ..     129     191 ..     119     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFma 382
                     +a+   + +++  + +a+i HrD   +N+l+     e++ +  L+D+ la++        +++   GT+ +m+
      CDO72454.1 129 KAFVSLVDALQACH-DAKIYHRDLKPENVLVS----EDGSEVYLADFGLATNRVI-----VDEFGCGTTIYMS 191
                     68888889999999.****************9....6788999***999998764.....3344566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.57
# Mc/sec: 2286.62
//
Query:       CDO72455.1  [L=81]
Description: hypothetical protein BN946_scf184977.g156 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-11   42.2   0.0    7.5e-11   42.2   0.0    1.0  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom
  ------ inclusion threshold ------
      0.042   14.2   0.1      0.049   14.0   0.1    1.1  1  DUF2039       Uncharacterized conserved protein (DUF2039)
      0.048   13.9   0.0       0.06   13.6   0.0    1.1  1  RIG-I_C-RD    C-terminal domain of RIG-I


Domain annotation for each model (and alignments):
>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.2e-14   7.5e-11      25      89 ..      20      76 ..       2      81 .] 0.75

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.2e-14
                  CEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEEECSCC.CCCCCTCEEEEGGG CS
  Yippee-Mis18 25 lnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYksteee.lkykrglfiletka 89
                   n+v  ++  r++++g+++v+d         ++C +C+++lGwkY  + e  +kyk+g++ile + 
    CDO72455.1 20 VNVVEGEPNDRQMTTGNHTVRD---------IYCVKCGQTLGWKYDYAYEPsQKYKEGKYILERNL 76
                  4555555556666666666666.........***************999988**********9876 PP

>> DUF2039  Uncharacterized conserved protein (DUF2039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   8.3e-06     0.049      19      56 ..      31      67 ..      19      77 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.3e-06
     DUF2039 19 ktkkieklavegvCerCkdkieWkvkykkYkaltkkkk 56
                ++++ +++  +  C +C +++ Wk +y  Y++ +k k+
  CDO72455.1 31 QMTTGNHTVRDIYCVKCGQTLGWKYDYA-YEPSQKYKE 67
                4444555667788*************95.666655544 PP

>> RIG-I_C-RD  C-terminal domain of RIG-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     1e-05      0.06      38      73 ..      21      57 ..      13      62 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
  RIG-I_C-RD 38 kvkekkkkekkf.edfekkgkikCkkCkkdwGimmky 73
                +v e +++++++    ++ ++i+C kC++++G  + y
  CDO72455.1 21 NVVEGEPNDRQMtTGNHTVRDIYCVKCGQTLGWKYDY 57
                5555566666665888899*************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.33s 00:00:00.84 Elapsed: 00:00:00.53
# Mc/sec: 462.27
//
Query:       CDO72456.1  [L=493]
Description: hypothetical protein BN946_scf184977.g157 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-104  350.3   0.0   1.4e-104  349.8   0.0    1.2  1  DUF1729   Domain of unknown function (DUF1729)
  ------ inclusion threshold ------
       0.18   11.8   1.2       0.38   10.8   0.3    2.1  2  TubC_N    TubC N-terminal docking domain


Domain annotation for each model (and alignments):
>> DUF1729  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.8   0.0  1.6e-108  1.4e-104       1     263 [.     229     492 ..     229     493 .] 0.97

  Alignments for each domain:
  == domain 1  score: 349.8 bits;  conditional E-value: 1.6e-108
     DUF1729   1 piilqwtggraGGHHSledleaplletYakiRkqkNvvlvvGsGlgdaedsieyltGeWsk.elglppmPvdgillgsavmvakEaktseevkqlivet 98 
                 p+i+qwtggraGGHHS+ed+++p+l+tY+ iR+++N++lv+G G+g a+d+++yltG+Ws+ ++gl pmP+dg+l++s+vmvakEa+ts++vk liv++
  CDO72456.1 229 PVIMQWTGGRAGGHHSCEDFHQPILATYGAIRQHSNLILVGGFGFGGADDVWPYLTGDWSVeRFGLQPMPFDGFLFASRVMVAKEAHTSSSVKDLIVAA 327
                 79**********************************************************637************************************ PP

     DUF1729  99 pGvkdeeWeatykkpaGgvvsvrSelgepihkianraaklwkeldetifsleavekrkaalekkrdeiierlnkdyakpwfavdeege.lveleemtYs 196
                  Gv+d++We ty+k++Gg+++vrSelgepihkia+r+ klwke+d+t+f+l ++ekr a+l ++r+eii++ln ++akpwf+  ++g+   ++++mtY+
  CDO72456.1 328 SGVDDSQWEGTYSKETGGILTVRSELGEPIHKIATRGIKLWKEFDDTVFKL-PKEKRAAWLAERRAEIIAKLNLNFAKPWFGW-KDGSvVEDIADMTYE 424
                 ***************************************************.*****************************99.66772556******* PP

     DUF1729 197 evvrRlveLaflksrkewidpswkklfqdllqrveeRl.taeehgeaesllesvealedPaeavetll 263
                 ev+  ++ L+++ ++++wid s+++l+ d+l+rvee l  ++  g+++s l+s+++l++P+++ve+++
  CDO72456.1 425 EVTLQMIRLMYVAHQERWIDISLRNLTGDWLRRVEEHLaGVNGGGQKASILQSYSVLDKPQAFVEEFF 492
                 **************************************77888899******************9997 PP

>> TubC_N  TubC N-terminal docking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.4   1.3e+04       8      21 ..      43      56 ..      42      56 .. 0.83
   2 ?   10.8   0.3   4.3e-05      0.38       5      50 ..     357     398 ..     355     399 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.4
      TubC_N  8 lealgIkLwleggr 21
                l  +g+++ + g++
  CDO72456.1 43 LDGRGVRVIVAGDK 56
                6679****999997 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.3e-05
      TubC_N   5 laelealgIkLwleggrLrfrApkgaltpelraklkerKaeIiafL 50 
                 +++++ +gIkLw e +   f+ pk+      +a+l+er+aeIia L
  CDO72456.1 357 IHKIATRGIKLWKEFDDTVFKLPKE----KRAAWLAERRAEIIAKL 398
                 678899***************9997....6899**********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3258.68
//
Query:       CDO72457.1  [L=121]
Description: hypothetical protein BN946_scf184977.g158 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 883.11
//
Query:       CDO72458.1  [L=252]
Description: hypothetical protein BN946_scf184977.g159 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2019.67
//
Query:       CDO72459.1  [L=137]
Description: hypothetical protein BN946_scf184977.g160 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-54  182.0   7.9    4.9e-54  181.8   7.9    1.0  1  Cornichon  Cornichon protein


Domain annotation for each model (and alignments):
>> Cornichon  Cornichon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   7.9   2.7e-58   4.9e-54       2     122 .]       6     126 ..       5     126 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.8 bits;  conditional E-value: 2.7e-58
   Cornichon   2 llfilaliltaallflsvyfiialsDleadyinpidlcsklNplvlpelilhafltllfllsgewilfllnlpllayniyrvmskqglydpteifnqlk 100
                 +lf+++++++a+llf +v+fii++sDle+dyinpidlc+klN++vlpe i+hafl+llfllsg+wi+flln+pllayni+++  ++++yd+teif++l 
  CDO72459.1   6 WLFLFSVLMAAGLLFTMVFFIIMFSDLECDYINPIDLCNKLNQFVLPENIAHAFLSLLFLLSGQWIAFLLNAPLLAYNINKIRGGSHMYDATEIFRTLP 104
                 89************************************************************************************************* PP

   Cornichon 101 khkkesmiklafylllffiyLY 122
                 +hkkes++kl+fyll+ff+yLY
  CDO72459.1 105 NHKKESFFKLGFYLLSFFYYLY 126
                 *********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1004.73
//
Query:       CDO72460.1  [L=105]
Description: hypothetical protein BN946_scf184980.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.34   10.7   6.1       0.49   10.2   6.1    1.3  1  Coilin_N    Coilin N-terminus
       0.42   11.3  21.5       0.59   10.8  21.5    1.2  1  DUF4398     Domain of unknown function (DUF4398)
       0.85   10.0  15.2        1.4    9.3  15.2    1.4  1  DBINO       DNA-binding domain


Domain annotation for each model (and alignments):
>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.1   8.2e-05      0.49      65     132 ..      21      88 ..      20     101 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.2e-05
    Coilin_N  65 rvlrdndcirVklegsetkleaqesededsresasksasttkqkkkkKrekkqeeqdeqkasqaakdk 132
                 rvlr+++ +r+  e +e++++  e+ ++ ++e  +k++++ ++k+++  e+ ++   e  ++++ k+ 
  CDO72460.1  21 RVLREAEELRAAGERDEREQRVREAREKAEQERLAKEKAENERKEREAAESRKRPAGEAPRGTPPKKT 88 
                 79*********666666666666666666666666655555555555555555555555555554444 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  21.5   9.8e-05      0.59      15      77 ..       4      70 ..       1      71 [. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.8e-05
     DUF4398 15 aagaeeyApae.leeAreaLaqAeaamaekdyeeAdhlaylAerdae...lAearAkaakaeaeaaa 77
                ++g +e+ p e le+  + L++Ae++ a+++ +e ++  ++A+++ae   lA+++A+ +++e+eaa+
  CDO72460.1  4 NDGNAEETPQErLERLDRVLREAEELRAAGERDEREQRVREAREKAEqerLAKEKAENERKEREAAE 70
                466666666666*************9999999999**********99999**************986 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  15.2   0.00023       1.4      58     111 ..      13      66 ..       3      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00023
       DBINO  58 kdlqlrakrlvremllfwkknekeereerkkaekealekakkeeeereakRqqr 111
                 ++   r  r+ re        e++ere+r ++ +e++e+++  +e+ e++R++r
  CDO72460.1  13 QERLERLDRVLREAEELRAAGERDEREQRVREAREKAEQERLAKEKAENERKER 66 
                 56667888999****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1963  (0.109487); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 818.32
//
Query:       CDO72461.1  [L=902]
Description: hypothetical protein BN946_scf184980.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-38  131.6   4.6    2.7e-38  130.7   4.6    1.4  1  Cerato-platanin  Cerato-platanin


Domain annotation for each model (and alignments):
>> Cerato-platanin  Cerato-platanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   4.6   1.5e-42   2.7e-38       3     118 ..      32     146 ..      30     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.5e-42
  Cerato-platanin   3 vsydtgyddanrsltvvscsdGsnGlitkywptqgavknfpriGGlsaiagwnsancGtcykityngktiyvlaidaagaGfniakkamdeltn 96 
                      ++ydt yd+ ++sl+ v+cs+G+ Gl t+ + t+g++++ +++GG++a+agwnsancGtc++++yng ti+vlaid+a +G+n++++am++lt 
       CDO72461.1  32 ITYDTVYDKKSNSLDIVACSNGKYGLETRGYTTFGSLPA-TYVGGVQAVAGWNSANCGTCWQVSYNGTTINVLAIDHADSGVNLGENAMNKLTH 124
                      78***********************************97.79**************************************************** PP

  Cerato-platanin  97 gqaaelGrvdaeveevalsdcg 118
                      g+a++ G v+a+v++v++ +cg
       CDO72461.1 125 GHAVQRGVVHAKVKQVDAINCG 146
                      *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 6010.11
//
Query:       CDO72462.1  [L=1744]
Description: hypothetical protein BN946_scf184980.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.51
# Mc/sec: 10276.46
//
Query:       CDO72463.1  [L=928]
Description: hypothetical protein BN946_scf184980.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-60  202.3   0.0    7.4e-60  201.8   0.0    1.2  1  PRMT5_C          PRMT5 oligomerisation domain
    1.1e-58  198.4   0.1    1.3e-56  191.6   0.1    2.3  1  PRMT5_TIM        PRMT5 TIM barrel domain
    1.7e-56  190.8   0.0    4.3e-56  189.5   0.0    1.6  2  PRMT5            PRMT5 arginine-N-methyltransferase
    1.8e-12   47.2   0.2    7.6e-11   42.0   0.1    2.6  2  Ank_5            Ankyrin repeats (many copies)
    2.7e-12   46.9   0.0      6e-06   26.7   0.0    2.9  2  Ank_4            Ankyrin repeats (many copies)
      2e-09   37.9   0.0    5.2e-09   36.6   0.0    1.7  1  Ank_2            Ankyrin repeats (3 copies)
      5e-08   33.0   0.2    0.00069   20.0   0.0    3.2  3  Ank              Ankyrin repeat
    1.5e-06   28.1   0.0    0.00023   21.3   0.0    3.1  2  Ank_3            Ankyrin repeat
    8.8e-05   23.1   0.0     0.0002   22.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0066   16.2   0.0      0.012   15.4   0.0    1.3  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
      0.017   15.8   0.0      0.036   14.7   0.0    1.5  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> PRMT5_C  PRMT5 oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   4.5e-63   7.4e-60       1     177 []     668     926 ..     668     926 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 4.5e-63
                 EEEEEEEEEE-HHHHHHHHT...-HHHCS-EEEB--S-EESSS...........S-EEEEEEESS-TTSS...........-S-EEEEEEEEE-SSEEE CS
     PRMT5_C   1 sytsyiaPisapklyqklks...ekaletpyvvklvkvdklse...........kvkevweFehpneeke..........eenersktlefkikekaei 75 
                 syt+y+aP+s++kly++ ++   +ka+etpyvv+l++++ ls+           +++e+weFehp ++++          ++n+rs++l+f+i + +++
  CDO72463.1 668 SYTAYVAPLSSSKLYNETRAmkdSKAMETPYVVMLHAINVLSDngggisgtcgpRIQECWEFEHPRKDAAlteqglpltnSHNARSAKLTFHIPNAGVL 766
                 7****************99988779************************************************************************** PP

                 EEEEEEEEEEEETTEEEE-SCCC...--TT-TS---EEEEEEEEEEE-TTEEEEEEEEEEEESSEEEEEEEEEECSTTS-E.................. CS
     PRMT5_C  76 hGlagyFeavLYkdvelSilPetkeaktkdliSWfpiffPlkkpllvkddselevslwRktdekkvWYEWsvesfvylvls.................. 156
                 hG+ gyFeavLY++v lSi+P+ + + +kd+ SWfp+ffPlk+pl+++ dsel+vs+wR td++kvWYEW  e+f  + +s                  
  CDO72463.1 767 HGFGGYFEAVLYGHVGLSIHPDRMAQISKDMLSWFPLFFPLKDPLYLPADSELTVSIWRLTDARKVWYEWYAEAFLPVPSSsvhspiwrdtlspmspsg 865
                 *****************************************************************************77779***************** PP

                 ................................................---BSGGGSS--E CS
     PRMT5_C 157 ........................................hvrvkvgvselhnvngraysi 177
                                                            vk+++++lhn++g++++i
  CDO72463.1 866 dnsflspvastptivtsplldvpqltlevpsqqlerhkdgVSLVKISQTALHNPGGESSWI 926
                 *************************************999889*************99987 PP

>> PRMT5_TIM  PRMT5 TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.1   8.2e-60   1.3e-56       1     249 [.     248     518 ..     248     526 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 8.2e-60
                 T-SEEEEETT-CCHHT-....................SSSTTCCC--S-SS--CCCS-HHHHHHHEEEE--TT--TT-SSHHHHHHHHHHHHHHHHHHH CS
   PRMT5_TIM   1 gydfvvlpltnarfkde..................kkdeeadaerrvppltrsdvvlspsdwsqsviglisewidldsedeeirkdsekvLkkelayaa 81 
                 gyd v++pltn+++k++                    +++a+a+r++p++ r++v++s+ ++ ++vi+lis+w++ld +d+ +r+d+e           
  CDO72463.1 248 GYDTVCVPLTNEKWKTRwrelcilsqdpedsaerlAIEQRAEAWRSKPAFFRDEVTISRLEEAEGVIPLISDWLELDASDDWVRHDAEI---------- 336
                 79********************************98899******************************************99999874.......... PP

                 HHT-SEEEEE--SS..--HHHHHHHHHHHCCSSS-EEEEEEESSGGGCTT-STCTTS----S.......................CCGHHHHHHHHHHH CS
   PRMT5_TIM  82 ylglralilpgpslreklanyaraissalesanavtisisiplaedkeleeeeetlanaleg.......................dllstWelWntirt 157
                      ++ilp+ps+r+++ +yara++++l++   +++si++p++ + +  +  ++ +    +                        +++tWe+W+tirt
  CDO72463.1 337 -----CVILPAPSNRTQVGSYARAVNACLAKIPFMELSIRVPIYDPTSVLQVPSRAP----SpvgskrssaasmgaeeamgtppeSNMTTWEMWDTIRT 426
                 .....8***********************99999************76544444443....134558999**************999************ PP

                 HTTT-TCEEEECC--.CCGTSHHHHCCCCCTTEEEEEEECGG-EESTTT-EE--HHHHHHHHHHHHTT-EEEEESSSTTTTTCCCHCHHHHHH CS
   PRMT5_TIM 158 lcgyssrLsVaLeLp.kelpskeelerWlaEPvkliilsasiFltnkkgypvLskahqallkeffklnvkiiLsgvekkaksskgdvkaylky 249
                 +cgy++rL++aL+L+ + + s ++l++W+aEPv+ ++l+as+F+ n+kgypvL+k  q++++ ++kl++++iLsg +  +k+ +g+++ay +y
  CDO72463.1 427 ICGYNPRLTLALDLTpPLPLSSSVLDQWSAEPVRHLWLPASAFIANAKGYPVLPKGTQSFIRDIMKLQPNVILSG-TRAKKHARGGEAAYAQY 518
                 ***************88888999****************************************************.9***************8 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.0   2.6e-59   4.3e-56      20     173 .]     519     665 ..     512     665 .. 0.95
   2 ?   -3.0   0.0       3.4   5.6e+03      19      46 ..     813     840 ..     807     843 .. 0.82

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 2.6e-59
                 TTTS---HHHHHHHCC-CCHHHHHHHHHHHHHHHHCTCCGTCC.-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHTT CS
       PRMT5  20 PlsdnLesatYevFEkdkvKYelYeeAiekalsdlkkekkkksekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneekW 118
                 Pl+dnL+s+tY++FE+d+vKY+ YeeAi  als++ +        k++++v+GaGRGplv ralka+e++k ++  ++avEKnpna+vtLq++ + ++W
  CDO72463.1 519 PLMDNLQSITYHTFEQDPVKYRNYEEAIFLALSEWPNPG------KVTLCVAGAGRGPLVARALKAIERSK-KEAFVYAVEKNPNAYVTLQER-HRSEW 609
                 9**********************************9877......4678**********************.9999*****************.88999 PP

                 CCG.CEEEES-CCCCCHCC-ECEEEE---BTTBCCCSHHHHHHCCGGGCECCEEEE CS
       PRMT5 119 eek.veviksdmrelkaeekvdllvsELLGSfgdnELsPEcldgvqkflkeegisi 173
                 +++ v+++  dmr+l+ +ekvd+l+sELLGSfgdnELsPEcldg+ +flk++gisi
  CDO72463.1 610 GDEkVKLLYGDMRTLEVPEKVDILISELLGSFGDNELSPECLDGASRFLKPDGISI 665
                 6655**************************************************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
                 -TTTS---HHHHHHHCC-CCHHHHHHHH CS
       PRMT5  19 qPlsdnLesatYevFEkdkvKYelYeeA 46 
                  P   +L  +++   +  kv Ye+Y eA
  CDO72463.1 813 LPADSELTVSIWRLTDARKVWYEWYAEA 840
                 4888899999999999999******998 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   4.7e-14   7.6e-11       8      55 ..       2      49 ..       1      50 [. 0.96
   2 ?    2.6   0.0      0.11   1.8e+02       1      19 [.      59      76 ..      52      80 .. 0.57

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.7e-14
       Ank_5  8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55
                ++n +d++ +tp+h Aa+yg+ +++++L+ rg d n+td++G+t+l +
  CDO72463.1  2 SPNVPDPNTYTPMHAAASYGHINILEYLVSRGGDVNVTDNDGDTPLYV 49
                79*******************************************975 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
       Ank_5  1 Llehgpadvnrldgggntp 19
                L+ehg a vnr++ +g++p
  CDO72463.1 59 LVEHG-ATVNRQNDEGMSP 76
                45555.5555555555554 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.7e-09     6e-06       2      40 ..      11      48 ..      10      50 .. 0.95
   2 !   17.1   0.0   3.7e-06     0.006      13      41 ..      52      79 ..      51      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.7e-09
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalh 40
                +t++h+aa++g++ ++++L+++g d+n + +++G+t+l+
  CDO72463.1 11 YTPMHAAASYGHINILEYLVSRGGDVNVT-DNDGDTPLY 48
                79***************************.999*****8 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.7e-06
       Ank_4 13 rlelvrlLlekgadinaqdnrsGetalhi 41
                ++e++r+L+e+ga +n+q n++G+++ ++
  CDO72463.1 52 NIETARWLVEHGATVNRQ-NDEGMSPAQY 79
                89****************.******9775 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.2e-12   5.2e-09      22      83 .]       8      70 ..       2      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.2e-12
       Ank_2 22 pnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83
                p  n  t++h+Aa++g+++i+++L++       +dndg tpL++   + ++e++++L+e+ga +n+++
  CDO72463.1  8 P--NTYTPMHAAASYGHINILEYLVSRggdvnvTDNDGDTPLYVV--E-NIETARWLVEHGATVNRQN 70
                3..579*******************9666766677********98..3.56**************986 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.2e-07   0.00069       3      32 .]      11      41 ..       9      41 .. 0.94
   2 !    9.6   0.0   0.00079       1.3       1      32 []      42      71 ..      42      71 .. 0.89
   3 ?   -2.6   0.0       5.8   9.4e+03       6      11 ..     174     180 ..     174     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.2e-07
                BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank  3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32
                +TP H Aa++g+ +i+++L+ +G ++n +dn
  CDO72463.1 11 YTPMHAAASYGHINILEYLVsRGGDVNVTDN 41
                8*******************7778*****97 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00079
                TSBBHHHHHH.HHTTHHHHHHHH.TTTSTTCBTT CS
         Ank  1 dGnTPLHlAa.tngkkriiklLL.hGAnlnaldn 32
                dG+TPL + + ++     +++L+ hGA +n +++
  CDO72463.1 42 DGDTPLYV-VeNIE---TARWLVeHGATVNRQND 71
                8*******.84665...*************9985 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.8
                 HHHHH.H CS
         Ank   6 LHlAa.t 11 
                 LHlAa +
  CDO72463.1 174 LHLAAiR 180
                 9**9952 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.4e-07   0.00023       2      31 .]      10      38 ..       9      38 .. 0.94
   2 ?    3.3   0.0       0.1   1.7e+02       7      30 ..      48      67 ..      42      68 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.4e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvna 31
                 +tp+h Aa++g+++i+++L+  +g dvn+
  CDO72463.1 10 TYTPMHAAASYGHINILEYLVS-RGGDVNV 38
                69********************.9****95 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.1
       Ank_3  7 hlAarsgnleivkfLlenkgadvn 30
                + +++++ +  +++L+e +ga vn
  CDO72463.1 48 Y-VVENIET--ARWLVE-HGATVN 67
                5.4444444..9*****.9**998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.2e-07    0.0002       4      97 .]     564     662 ..     562     662 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-07
                      ET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHH.HHHHHHH CS
  Methyltransf_25   4 lGcGtGrltlalakrl...g.kakvtgvDiseemleaareraeeegl...nvefvqgdaedlpfedgsfDlvvssgalhhlsdedl.ekalkei 89 
                      +G+G+G l+++++k++   + +a v++v+ ++++  + +er+++e +   +v+++ gd+++l+ ++ ++D+ +s   l  + d++l +++l+ +
       CDO72463.1 564 AGAGRGPLVARALKAIersKkEAFVYAVEKNPNAYVTLQERHRSE-WgdeKVKLLYGDMRTLEVPE-KVDILIS-ELLGSFGDNELsPECLDGA 654
                      59999999999999987652599******************9874.3368*************997.*******.67888777776379***** PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                      +r Lkp+G
       CDO72463.1 655 SRFLKPDG 662
                      *******9 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.3e-06     0.012     109     175 ..     566     636 ..     541     686 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.3e-06
                 -TTTCCHH....HCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE- CS
      Met_10 109 AGiGpfai....piakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmn 175
                 AG Gp+      +i +  k+ +v+a+++nP+++  l+e  +    +++vk + +D r++  ++++d ++ +
  CDO72463.1 566 AGRGPLVAralkAIERSKKEAFVYAVEKNPNAYVTLQERHRSEWGDEKVKLLYGDMRTLEVPEKVDILISE 636
                 555555321112355666899*************************************9998888876655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.2e-05     0.036       4      94 ..     565     664 ..     562     665 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
                      T-TTSHHHHHHH....HTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHHHHHHH CS
  Methyltransf_11   4 GcGtGrlaeala....krg...arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv...edpekalkeia 85 
                      G+G+G l++       +     a v++v+ ++++  + +e+ + e    kv+++ +d+++l +++ ++D+ +s      +   e   ++l+ + 
       CDO72463.1 565 GAGRGPLVARALkaieR-SkkeAFVYAVEKNPNAYVTLQERHRSEWGdeKVKLLYGDMRTLEVPE-KVDILISELLG-SFgdnELSPECLDGAS 655
                      67776555554435532.246799*********99888777777655889**************9.9**99988744.444768899******* PP

                      HHEEEEEEE CS
  Methyltransf_11  86 RvLkpgGll 94 
                      R Lkp+G+ 
       CDO72463.1 656 RFLKPDGIS 664
                      *******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6469.14
//
Query:       CDO72464.1  [L=763]
Description: hypothetical protein BN946_scf184980.g5, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-14   51.4   2.8    1.3e-13   50.2   2.8    1.6  1  GATA      GATA zinc finger
     0.0021   18.3   0.1      0.025   14.8   0.0    2.3  2  PAS_4     PAS fold
     0.0098   16.2   0.0       0.03   14.6   0.0    1.9  1  PAS_3     PAS fold
  ------ inclusion threshold ------
       0.17   12.0   0.0       0.33   11.1   0.0    1.4  1  DUF2318   Predicted membrane protein (DUF2318)


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   2.8     3e-17   1.3e-13       1      33 [.     509     541 ..     509     544 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3e-17
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkk 33 
                 C++C++t++p+WR+gp+g+k LCnaCGl+++  
  CDO72464.1 509 CASCKATQSPEWRKGPSGKKDLCNACGLRFARS 541
                 ******************************875 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.7e-06     0.025       6      72 ..      83     149 ..      79     160 .. 0.88
   2 ?    0.6   0.1      0.15   6.6e+02      28      60 ..     642     675 ..     634     696 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-06
       PAS_4   6 dalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleel 72 
                 ++++ l  d+++ly+ +  a+++g +++ l+G++l +++ ++ +a   ++l +vle+++ + +++ +
  CDO72464.1  83 CYWTLLTYDLTFLYLDPVLASHLGEQADLLVGRSLLDYVHPDEQASAKNDLGAVLESKTLHGSVTRV 149
                 57888899*****************************99999**************99877666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
       PAS_4  28 fgappeellGktlaellpee.daarleralrrvl 60 
                 ++a++++++G++ a++++ + ++   ++ +++v+
  CDO72464.1 642 MQAERQQHYGQHAAQFYSLPpSQSMQQPGMQHVA 675
                 567999********87776667777777777776 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.7e-06      0.03       2      50 ..      95     141 ..      94     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.7e-06
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkge 50 
                 +y+++     lG +++ l g+  s+ld+vhp++++ ++++l ++l++++
  CDO72464.1  95 LYLDPVLASHLGEQADLLVGR--SLLDYVHPDEQASAKNDLGAVLESKT 141
                 7899999999***********..********************998877 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.3e-05      0.33      15      74 ..     487     550 ..     482     560 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.3e-05
     DUF2318  15 gkevrflvvkksdgklrvaldaCevC...ekkgYv..qegeelvCknCgvrfaldsigekkGGCn 74 
                 g++ +f+   ++ g+  v++  C  C   ++ ++    +g++  C++Cg rfa ++ + k+GG +
  CDO72464.1 487 GSKEQFTGSSRTAGNPPVGVTHCASCkatQSPEWRkgPSGKKDLCNACGLRFARSRAK-KEGGSQ 550
                 566677778889999999********8776667774568999***************9.889865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5421.46
//
Query:       CDO72465.1  [L=306]
Description: hypothetical protein BN946_scf184980.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-27   92.6  19.7    1.5e-09   38.0   1.4    4.4  4  LRR_4     Leucine Rich repeats (2 copies)
      3e-24   84.5  19.6      3e-10   39.7   2.4    4.3  4  LRR_8     Leucine rich repeat
    1.4e-15   57.3   6.3    1.1e-09   38.0   0.3    3.0  3  LRR_9     Leucine-rich repeat
    7.2e-05   22.8  21.4        2.6    8.9   0.2    7.0  7  LRR_1     Leucine Rich Repeat
    8.3e-05   22.3  16.6       0.93    9.7   0.8    6.0  7  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.049   13.6   0.2       0.14   12.1   0.1    1.8  2  LRR_5     BspA type Leucine rich repeat region (6 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1     3e-05     0.088       1      39 [.     115     154 ..     115     160 .. 0.87
   2 !   20.8   1.7   1.2e-07   0.00037       2      42 ..     163     204 ..     162     207 .. 0.85
   3 !   31.6   0.3   5.1e-11   1.5e-07       3      44 .]     211     251 ..     209     251 .. 0.93
   4 !   38.0   1.4     5e-13   1.5e-09       1      44 []     253     295 ..     253     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgNnlitdl 39 
                 ++L+ L+L++N ++ +++  ++ l+  + Ld  +N +i+ +
  CDO72465.1 115 KHLKRLCLRQNFISHLDPevFNALTEIEDLDFYDN-KIKHV 154
                 68****************98889*********666.88765 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.2e-07
                 S--EEE--SS---E-S-.HH.H-TT--EEE-.-S-----GGGG CS
       LRR_4   2 nLevLdLsnNqltdipl.le.klpnLkeLdLsgNnlitdldeL 42 
                 nL++LdLs N l+ +p  le +l++L+++   +N +i+ +++L
  CDO72465.1 163 NLTTLDLSFNLLKHVPEeLEaNLKSLRTVFFVQN-RISHITNL 204
                 9************777777757*******99888.99888887 PP

  == domain 3  score: 31.6 bits;  conditional E-value: 5.1e-11
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGGXX CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLkn 44 
                 L++L L++N+++ i++l  l nL+eL+L g n+it+l++L+n
  CDO72465.1 211 LRSLELGGNKIRQIEGLDALVNLEELWL-GKNKITKLEGLEN 251
                 9***************999*********.666******9986 PP

  == domain 4  score: 38.0 bits;  conditional E-value: 5e-13
                 SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGGXX CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLkn 44 
                 ++L++L++++N++t++++le+l nL+eL+Ls+N  i++l++L++
  CDO72465.1 253 KKLKILSIQSNRITKLEGLEGLENLEELYLSHN-GISKLEGLEK 295
                 69****************************999.9999999975 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   2.4     1e-13     3e-10       2      61 .]     116     174 ..     115     174 .. 0.97
   2 !   28.2   3.6   3.8e-10   1.1e-06       1      61 []     162     221 ..     162     221 .. 0.91
   3 !   15.1   0.1   4.7e-06     0.014      26      61 .]     210     243 ..     205     243 .. 0.93
   4 !   34.7   4.4   3.7e-12   1.1e-08       2      61 .]     232     287 ..     231     287 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1e-13
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++L L+ N +++ld+e+F+ l+  + Ld  +N+++++   a+  +++L+ LdLs N L
  CDO72465.1 116 HLKRLCLRQNFISHLDPEVFNALTEIEDLDFYDNKIKHV-GSALNTMSNLTTLDLSFNLL 174
                 8**************************************.6*****************87 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 3.8e-10
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT-.-S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgL.psLrsLdLsgNrL 61 
                 +nLt+LdLs+N l++++ e   +l++L++    +N+++++    + gL + LrsL L gN++
  CDO72465.1 162 SNLTTLDLSFNLLKHVPEELEANLKSLRTVFFVQNRISHIT--NLTGLgATLRSLELGGNKI 221
                 69**************************************6..66666247*********97 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 4.7e-06
                 T--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  L++L+L+ N+++ ++   ++ L +L++L L  N++
  CDO72465.1 210 TLRSLELGGNKIRQIE--GLDALVNLEELWLGKNKI 243
                 699************6..**************9997 PP

  == domain 4  score: 34.7 bits;  conditional E-value: 3.7e-12
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 nL++L L +N++t+l+    ++l++Lk+L++ +N++t l+   ++gL++L++L+Ls+N +
  CDO72465.1 232 NLEELWLGKNKITKLEG--LENLKKLKILSIQSNRITKLE--GLEGLENLEELYLSHNGI 287
                 89*************86..89******************6..****************86 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00036       1.1      49     104 ..     100     155 ..      80     157 .. 0.88
   2 !   20.1   0.6   1.2e-07   0.00036      43     114 ..     140     213 ..     133     215 .. 0.87
   3 !   38.0   0.3   3.7e-13   1.1e-09      22     107 ..     212     294 ..     208     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00036
       LRR_9  49 lsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqela 104
                 ls   i kl    + k lk l l +n i ++ +++ ++l ++e l + +n++++++
  CDO72465.1 100 LSSASISKLGLQRFGKHLKRLCLRQNFISHLDPEVFNALTEIEDLDFYDNKIKHVG 155
                 6788899999889999***********************************99865 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.2e-07
       LRR_9  43 qfdtidlsdndirkld.gfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPl.aslkk 114
                   + +d+ dn+i+++   +  +  l tl l+ n + ++ e+le  l +l+++ + +n++ ++++l  l a+l++
  CDO72465.1 140 EIEDLDFYDNKIKHVGsALNTMSNLTTLDLSFNLLKHVPEELEANLKSLRTVFFVQNRISHITNLTGLgATLRS 213
                 56779*********962699*******************************************99988445555 PP

  == domain 3  score: 38.0 bits;  conditional E-value: 3.7e-13
       LRR_9  22 reldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladld 107
                 r l+l g+ki +ie l a +  ++ + l  n+i kl+g+  lk+lk+l++++nri+++ egle  l nleel l++n + +l  l+
  CDO72465.1 212 RSLELGGNKIRQIEGLDALV-NLEELWLGKNKITKLEGLENLKKLKILSIQSNRITKL-EGLE-GLENLEELYLSHNGISKLEGLE 294
                 7899************9966.678888******************************8.6775.689*************998876 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         6   1.8e+04      14      23 .]      99     108 ..      94     108 .. 0.78
   2 !    7.6   0.3    0.0023       6.9       1      20 [.     116     135 ..     116     138 .. 0.87
   3 !    7.0   0.2    0.0038        11       1      13 [.     163     175 ..     163     203 .. 0.84
   4 ?    4.3   0.0      0.03        88       2      15 ..     211     224 ..     210     229 .. 0.82
   5 ?    2.9   0.2     0.083   2.5e+02       1      14 [.     232     245 ..     232     252 .. 0.81
   6 ?    2.8   0.1     0.092   2.7e+02       1      14 [.     254     267 ..     254     274 .. 0.83
   7 !    8.9   0.2   0.00086       2.6       1      16 [.     276     294 ..     276     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
       LRR_1  14 glppnsfqnL 23 
                 +l+++s+++L
  CDO72465.1  99 RLSSASISKL 108
                 7889999886 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0023
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +L++L L++n++++l p+ f
  CDO72465.1 116 HLKRLCLRQNFISHLDPEVF 135
                 69***********9999877 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0038
       LRR_1   1 nLrhLdLsnnpll 13 
                 nL++LdLs n l 
  CDO72465.1 163 NLTTLDLSFNLLK 175
                 8*********983 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.03
       LRR_1   2 LrhLdLsnnpllgl 15 
                 Lr+L L++n + ++
  CDO72465.1 211 LRSLELGGNKIRQI 224
                 9********98554 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.083
       LRR_1   1 nLrhLdLsnnpllg 14 
                 nL++L L+ n ++ 
  CDO72465.1 232 NLEELWLGKNKITK 245
                 8*********9843 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.092
       LRR_1   1 nLrhLdLsnnpllg 14 
                 +L+ L + +n+++ 
  CDO72465.1 254 KLKILSIQSNRITK 267
                 7*********9854 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.00086
       LRR_1   1 nLrhLdLsnnpl...lglp 16 
                 nL++L+Ls+n +   +gl+
  CDO72465.1 276 NLEELYLSHNGIsklEGLE 294
                 8*********984545555 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       5.1   1.5e+04       4      12 ..     116     124 ..     115     125 .. 0.72
   2 ?   -3.0   0.0       3.7   1.1e+04       7      16 ..     143     152 ..     141     155 .. 0.72
   3 !    9.7   0.8   0.00031      0.93       3      15 ..     162     174 ..     160     175 .. 0.86
   4 !    7.0   0.0    0.0024       7.1       4      15 ..     210     221 ..     209     223 .. 0.92
   5 ?   -0.1   0.0      0.45   1.3e+03       4      16 ..     232     244 ..     225     246 .. 0.87
   6 ?    5.0   0.1      0.01        30       3      16 ..     253     266 ..     251     272 .. 0.90
   7 !    7.3   0.1    0.0019       5.6       4      16 ..     276     288 ..     273     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.1
       LRR_6   4 hLteLdLsg 12 
                 hL+ L L+ 
  CDO72465.1 116 HLKRLCLRQ 124
                 999996665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.7
       LRR_6   7 eLdLsgNdIg 16 
                  Ld  +N+I 
  CDO72465.1 143 DLDFYDNKIK 152
                 5888899996 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00031
       LRR_6   3 thLteLdLsgNdI 15 
                 ++Lt+LdLs+N +
  CDO72465.1 162 SNLTTLDLSFNLL 174
                 89*********65 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0024
       LRR_6   4 hLteLdLsgNdI 15 
                 +L++L+L gN+I
  CDO72465.1 210 TLRSLELGGNKI 221
                 8**********9 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.45
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L+eL L  N+I+
  CDO72465.1 232 NLEELWLGKNKIT 244
                 7899999999997 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.01
       LRR_6   3 thLteLdLsgNdIg 16 
                  +L+ L++++N I+
  CDO72465.1 253 KKLKILSIQSNRIT 266
                 68**********98 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0019
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L+eL Ls+N+I+
  CDO72465.1 276 NLEELYLSHNGIS 288
                 89*********97 PP

>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.8e-05      0.14      29     110 ..     112     194 ..      94     226 .. 0.61
   2 ?   -1.3   0.0      0.66     2e+03      55      66 ..     251     262 ..     229     291 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
       LRR_5  29 aFsnctslksitlpss.lteigsyaFsncssltsitips.sltsigeyaFsncsslkeitlpsn.lttigssaFsnc.slesitip 110
                  F +   lk + l ++ ++ ++ ++F+  ++++++++ + +++++g+ a + +s+l++++l+ n l+ + ++  +n  sl+++ + 
  CDO72465.1 112 RFGKH--LKRLCLRQNfISHLDPEVFNALTEIEDLDFYDnKIKHVGS-ALNTMSNLTTLDLSFNlLKHVPEELEANLkSLRTVFFV 194
                 55544..6666665554566666666666667777665523444443.44446677766666554556666666665566655443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.66
       LRR_5  55 ncssltsitips 66 
                 n ++l+ ++i+s
  CDO72465.1 251 NLKKLKILSIQS 262
                 222333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2278.98
//
Query:       CDO72466.1  [L=392]
Description: hypothetical protein BN946_scf184980.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-16   59.1  28.3    9.3e-15   54.7  21.6    3.3  2  DUF4078      Domain of unknown function (DUF4078)
  ------ inclusion threshold ------
       0.26   11.9   1.3       0.42   11.2   0.3    1.9  2  Acyl-thio_N  Acyl-ATP thioesterase


Domain annotation for each model (and alignments):
>> DUF4078  Domain of unknown function (DUF4078)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.5       0.3   2.7e+03      44      72 ..      66      95 ..      63     103 .. 0.63
   2 !   54.7  21.6     1e-18   9.3e-15      10      67 ..     217     273 ..     208     323 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.3
     DUF4078 44 RkkqmeeLeelreeT.eeqRkkreelkekR 72
                R+++  eLee+ + T e +R+  e++++  
  CDO72466.1 66 RAARDIELEEISKPTlESARAILERKAKMY 95
                666667888888888556666666555544 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 1e-18
     DUF4078  10 eesatppeevhYdaekEvRtkGvgfyaFskDeeeRkkqmeeLeelreeTeeqRkkree 67 
                  e  ++p ++hYda++EvR kG+gfy+Fs+Dee+R+kqmeeL+++reeTe+ R+++++
  CDO72466.1 217 AE-ENNPLNIHYDATREVRAKGAGFYQFSADEETRRKQMEELRKAREETERTRAETRA 273
                 44.45579*********************************************99865 PP

>> Acyl-thio_N  Acyl-ATP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   4.7e-05      0.42       2      57 ..       9      63 ..       8      94 .. 0.80
   2 ?   -2.2   0.0      0.64   5.7e+03      49      77 ..     267     295 ..     245     333 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.7e-05
  Acyl-thio_N  2 vataaasaffpvpssssdaeakaskklgegkesldlrGikakpasssgalkvkana 57
                 +a + as+ff + ++ +++e++ +k+   gk++l ++G+k  ++ s + +k+ +  
   CDO72466.1  9 AAGVSASSFFDLKAELAKKEEEFAKNKAAGKSNLVVGGVKRDDKIS-QWAKANPGV 63
                 57899**************999999999***********9887763.333333333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.64
  Acyl-thio_N  49 galkvkanaqavpkvngtkvgladseekv 77 
                  ++++++a+   +  + g +vg +d++  +
   CDO72466.1 267 TRAETRAEDLRPGEIEGLNVGAEDTAGPF 295
                  34455555555555666665555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2769.49
//
Query:       CDO72467.1  [L=260]
Description: hypothetical protein BN946_scf184980.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   44.2   2.1    3.6e-10   40.2   2.1    2.5  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0015   18.1   0.6     0.0031   17.1   0.6    1.6  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   2.1   4.1e-14   3.6e-10      46     185 ..     116     248 ..      62     251 .. 0.70

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 4.1e-14
                  EEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH..TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEET CS
  Lactamase_B  46 davilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll..lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveyg 141
                    v+l+H H+DHi g++ ++e   +    +  +  a+++          g+    ++++  ++++++  +d  ++g+ +    ++pgh+++ + ++++
   CDO72467.1 116 YVVVLSHCHYDHILGVEQFAEDSLILASGHDPAFLAPETLPQHSLCADLGIHapSYRPVLLSHQAQITSRDRKTLGMTL---LHTPGHTPDEVALWDE 210
                  5799****************98777666666665555555553333333322346666666666666666666666654...5999************ PP

                  TCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHH CS
  Lactamase_B 142 ggkvlftGDallagetgridltlrgaevrdpsdaekyldsllkl 185
                  ++++l++GD+l+++  + ++        +  + +  ++dsl+ l
   CDO72467.1 211 EEGMLYVGDTLYERAPIIFPS------EGSIVKWLGTIDSLTAL 248
                  ************999999999......77777787777777766 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.6   3.4e-07    0.0031      33      53 ..     117     141 ..     113     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.4e-07
                    EEE-SS--HHHHGGGGCCCC....C CS
  Lactamase_B_2  33 aVllthaHyDHlaglltlre....l 53 
                    +V+l+h+HyDH+ g+  ++e    l
     CDO72467.1 117 VVVLSHCHYDHILGVEQFAEdsliL 141
                    69**************999955542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1898.82
//
Query:       CDO72468.1  [L=135]
Description: hypothetical protein BN946_scf184980.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-07   29.6   0.0    7.6e-06   26.5   0.0    2.0  2  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.033   5.8e+02       1      17 [.      10      27 ..      10      52 .. 0.78
   2 !   26.5   0.0   4.3e-10   7.6e-06      19      77 .]      75     135 .]      61     135 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.033
                EEETTCCHHHHT.CEEEE CS
        ThiS  1 vllfaelrelag.eeele 17
                vl+fa + +++g  +e +
  CDO72468.1 10 VLYFAAASTATGlTTEAV 27
                89*********9644443 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 4.3e-10
                 SSTSBHHHHHHHHHHHTCHHG...TTTTEEEEETTEEEGCCTTTSB--TTCEEEEEESTTC- CS
        ThiS  19 aegstvaelleaLgerypela...lerrvavavNgeivprlwldtelkdgDevailppVaGG 77 
                 + g  +++l + L +r+p+       ++   av++e+v++  ++ +lk g eva++ pV+GG
  CDO72468.1  75 SGGLPLSALADVLVARHPGTGlreILAQSQWAVDEEMVDD-PANVVLKGGEEVAVICPVSGG 135
                 45888999**********999999779*************.89******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 990.37
//
Query:       CDO72469.1  [L=273]
Description: hypothetical protein BN946_scf184980.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-26   91.5   0.0      6e-26   90.9   0.0    1.2  1  TPK_catalytic   Thiamin pyrophosphokinase, catalytic domain
    2.3e-22   78.5   0.2    3.5e-22   77.9   0.2    1.3  1  TPK_B1_binding  Thiamin pyrophosphokinase, vitamin B1 binding


Domain annotation for each model (and alignments):
>> TPK_catalytic  Thiamin pyrophosphokinase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   6.7e-30     6e-26      29     119 ..      66     176 ..      55     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 6.7e-30
  TPK_catalytic  29 lellpdvivGDlDSirpevkefyeskgteivkkpdqdstDlekaialvlekekedk....................nksivvlgalggRfDhtlan 104
                    + ++pd+i+GDlDS+r++v+ +y+s+g++iv+++dq+stDl+k+ia + e+e+ ++                    +++iv+lg+l+gR+D+t+++
     CDO72469.1  66 STFTPDLIKGDLDSLRDDVRAYYSSRGVRIVQDNDQYSTDLMKCIAALVEDERAERhvevrepssscpvsaahstkQNTIVLLGGLSGRLDQTVHT 161
                    5789*******************************************9999988889*************************************** PP

  TPK_catalytic 105 invllklkkkkikvv 119
                    +++++k++k++ + +
     CDO72469.1 162 LSLVHKMRKTRKRTF 176
                    *******99988766 PP

>> TPK_B1_binding  Thiamin pyrophosphokinase, vitamin B1 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.2   3.9e-26   3.5e-22       1      69 [.     191     258 ..     191     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 3.9e-26
                     EEEE..E-BTTB.-EEEEEESSSSEEEEEEESBSS-EEEEEESTTCETEEEEEBS.SSEEEEEEESBSE CS
  TPK_B1_binding   1 ehrirvkreeqegkyvgliPlggevtglttkGlkwnledwelefggllstSNeveeeeeavtietdsgv 69 
                     ehri+v+++  +g+++gl+P+g ++t ltt+Gl+wnl++++  f+g++stSN++++ee +vt++t++++
      CDO72469.1 191 EHRIQVDHTL-FGPTCGLLPVGIDSTILTTTGLRWNLTKHPSCFDGMVSTSNHLVPEEPVVTVKTTKPI 258
                     7*********.********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1916.75
//
Query:       CDO72470.1  [L=391]
Description: hypothetical protein BN946_scf184980.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.9   0.0    3.2e-07   31.3   0.0    1.9  2  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.8e-11   3.2e-07       2      68 ..      34      99 ..      33     104 .. 0.91
   2 ?   -3.7   0.0         1   1.8e+04      61      76 .]     207     222 ..     206     222 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.8e-11
                SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.TSCEEEEECEBSS-BETTTEEEEEETT CS
          CS  2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki.gkeklliegeLfgpIdpeesswtiesk 68
                +y+W+Q+ d+ +v + ++  ++ +++v+v ++ ++l +++ g+  ++++g+L+g++++  s w +e++
  CDO72470.1 34 SYSWHQSHDQATVLLLLPY-DTVEEEVSVIIEDDYLVAGVgGQ-HPVVKGKLYGKVNTAASVWQLEPR 99
                79****************9.9*******************666.5566999**************975 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
                 EEEEEETTEEEEEEEB CS
          CS  61 sswtieskkveitLkK 76 
                 s  t +++ + i+L+K
  CDO72470.1 207 SLHTGTGRLLTIHLEK 222
                 5566678889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2892.61
//
Query:       CDO72471.1  [L=1184]
Description: hypothetical protein BN946_scf184980.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 8025.91
//
Query:       CDO72472.1  [L=191]
Description: hypothetical protein BN946_scf184980.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-36  125.2   2.5    1.9e-36  124.8   2.5    1.2  1  Erg28     Erg28 like protein


Domain annotation for each model (and alignments):
>> Erg28  Erg28 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   2.5     1e-40   1.9e-36       1     110 []      67     175 ..      67     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 1e-40
       Erg28   1 glLpkwllfvsvvslgnslqnyvtlkltrrvYsgkpkeqvtplsaRtfgtwtllsaivrlyaaynienkalyqlalltyvialvhflsEllvfktaklg 99 
                 g+Lp w l+v+v++++n++ ++++++ +rr+Y++ p + v+pl++Rtf++wtl+sa+vr+yaayni+nk +y+lal+ty++a++hf sEl++f+ta+ +
  CDO72472.1  67 GWLPTWQLIVAVTATLNTIGSLTSVAGSRRLYNNAP-AFVNPLQSRTFAIWTLTSAVVRFYAAYNINNKLIYDLALFTYLFAFFHFGSELMIFRTARPS 164
                 79**********************************.************************************************************** PP

       Erg28 100 kgllfplivat 110
                  ++++p++v+t
  CDO72472.1 165 PPNMSPVVVST 175
                 *********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1436.56
//
Query:       CDO72473.1  [L=576]
Description: hypothetical protein BN946_scf184980.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-06   26.9   0.3     0.0011   18.9   0.0    4.2  5  LRR_6       Leucine Rich repeat
      2e-05   24.4   0.1    7.5e-05   22.5   0.1    2.1  1  F-box-like  F-box-like
     0.0047   17.3   0.2       0.44   11.0   0.1    3.7  4  LRR_4       Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.18   11.6   0.1         17    5.3   0.1    3.0  2  LRR_8       Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   5.6e+03       4      13 ..     332     341 ..     330     342 .. 0.83
   2 !   18.9   0.0   2.4e-07    0.0011       3      23 ..     421     441 ..     421     442 .. 0.94
   3 ?    2.2   0.0     0.055   2.5e+02       5      23 ..     449     468 ..     447     469 .. 0.85
   4 ?   -0.5   0.0      0.39   1.8e+03       5      13 ..     513     521 ..     510     528 .. 0.83
   5 ?   -3.7   0.0         4   1.8e+04       4      11 ..     537     544 ..     536     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
       LRR_6   4 hLteLdLsgN 13 
                  L++ dL+g+
  CDO72473.1 332 DLEAIDLTGC 341
                 58999***99 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2.4e-07
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 ++Lt+LdLs+  I+ eG+ aL
  CDO72473.1 421 PNLTHLDLSCTRITPEGLAAL 441
                 58*****************99 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.055
       LRR_6   5 LteLdLsgNd.IgDeGaeaL 23 
                 L++L L  ++ +++e + a+
  CDO72473.1 449 LQSLALERCNwLTGESLRAF 468
                 88899999999****99886 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.39
       LRR_6   5 LteLdLsgN 13 
                 L +LdLs+ 
  CDO72473.1 513 LVYLDLSSA 521
                 889****86 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 4
       LRR_6   4 hLteLdLs 11 
                  L++L Ls
  CDO72473.1 537 RLRSLGLS 544
                 69999997 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.7e-08   7.5e-05      18      47 ..      65      92 ..       8      93 .. 0.62

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.7e-08
  F-box-like 18 psdLlrlalVCrrWrrvaldtplLWrrlvl 47
                 ++L++l+lV + W+++a   p LWr++ +
  CDO72473.1 65 RRTLANLCLVNKAWYDAA--KPWLWRKIEI 92
                457***************..88*****966 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   1.1e+04      21      33 ..     329     341 ..     323     342 .. 0.79
   2 !   11.0   0.1   9.9e-05      0.44      20      37 ..     414     434 ..     395     440 .. 0.67
   3 ?   -1.5   0.0      0.88   3.9e+03      22      32 ..     475     485 ..     447     494 .. 0.58
   4 ?    1.0   0.0      0.14   6.2e+02       3      31 ..     513     544 ..     506     550 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
                 H-TT--EEE-.-S CS
       LRR_4  21 klpnLkeLdLsgN 33 
                  +++L+ +dL+g+
  CDO72473.1 329 ECKDLEAIDLTGC 341
                 4899999999775 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.9e-05
                 H....H-TT--EEE-.-S---- CS
       LRR_4  20 e....klpnLkeLdLsgNnlit 37 
                 e     +pnL++LdL ++++it
  CDO72473.1 414 EplvlAFPNLTHLDL-SCTRIT 434
                 233344999999999.776776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.88
                 -TT--EEE-.- CS
       LRR_4  22 lpnLkeLdLsg 32 
                   +L+eL+L g
  CDO72473.1 475 AQDLRELSLYG 485
                 45577777755 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.14
                 --EEE--SS---.E-S-..HHH-TT--EEE-. CS
       LRR_4   3 LevLdLsnNqlt.dipl..leklpnLkeLdLs 31 
                 L +LdLs+  +t di l  ++  p L++L Ls
  CDO72473.1 513 LVYLDLSSAPVTrDILLdvCAPQPRLRSLGLS 544
                 67888888888877655443347888888775 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0038        17      25      38 ..     421     434 ..     417     458 .. 0.74
   2 ?    2.8   0.0     0.022        99      22      58 ..     509     545 ..     504     547 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0038
                 TT--EEE--SS--- CS
       LRR_8  25 snLkvLdLsnNllt 38 
                 +nL++LdLs+ ++t
  CDO72473.1 421 PNLTHLDLSCTRIT 434
                 66777777766665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.022
                 TT-TT--EEE--SS.---GGGGGGGTT--S-.EEE--S CS
       LRR_8  22 kglsnLkvLdLsnN.llttlspgafsgLpsLrsLdLsg 58 
                 k + +L +LdLs+    + +  ++++  p+LrsL Ls+
  CDO72473.1 509 K-NGQLVYLDLSSApVTRDILLDVCAPQPRLRSLGLSQ 545
                 5.4789999999996666699999999999**999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 4058.31
//
Query:       CDO72474.1  [L=439]
Description: hypothetical protein BN946_scf184980.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-32  111.7  33.0    5.4e-19   68.6  14.6    2.2  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0  10.3   3.4e-17     6e-13      46     150 ..      49     167 ..      47     168 .. 0.93
   2 !   68.6  14.6     3e-23   5.4e-19       3     150 ..     265     422 ..     263     423 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 3.4e-17
                 HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHH................HT CS
    Na_Ca_ex  46 gnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkldlgllllvallllllvlllllplfv................pg 128
                 ++++ Eli++iia+++ e +++ ++++Gs++ nlllv+G++++ g+  + se+  + +++++l + ll+++v+++l+p+++                  
  CDO72474.1  49 FGNAVELIVAIIALVHCELQIVQSSLVGSILSNLLLVLGMCFFAGG-MKFSEQ-GFGISVTQLNSSLLIISVIAVLIPAAFhlvadssigdpkeasdLL 145
                 67999*****************************************.666666.677777889999999999999****99****************** PP

                 EEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 129 rltvleglvllllYalylvlsl 150
                  +++  +++ll++Y+ ylv++l
  CDO72474.1 146 SVSRGSAIILLFIYGSYLVFQL 167
                 ********************98 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++l+++ ++l++v+a++lv+s++ ++++ gi+ +++Gl+ll++++++ E+++++++ ++++ +l++g ++Gs i++ l+vi++i+ ++++  +++sl +
  CDO72474.1 265 IGLLAVVTVLVAVTAEWLVDSINGLVETGGINREFIGLILLPIVGNAAEHVTAVTVSVKDKLTLSLGVAVGSSIQIALFVIPFIVTLAWIMGKPLSLLF 363
                 578999*********************99************************************************************9999888877 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHH..............HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfv..............pgrltvleglvllllYalylvlsl 150
                 d     + +++l+l+ + l +p +               +g+ ++leg++l+ lY++ ++ ++
  CDO72474.1 364 DP----FESIVLFLSGMSLSTPIKRdilrgvlvvnyvvqDGKSNWLEGMILMCLYVILALTFW 422
                 77....3333333344555566666788999**************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3258.99
//
Query:       CDO72475.1  [L=847]
Description: hypothetical protein BN946_scf184980.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-88  295.6  17.7    2.3e-44  151.2   5.7    2.4  2  adh_short        short chain dehydrogenase
    1.4e-69  234.2  16.8    1.5e-35  122.8   4.0    3.2  3  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.6e-23   83.6  11.1    6.9e-15   55.4   2.9    2.2  2  KR               KR domain
    9.1e-18   64.0   0.0    2.4e-17   62.6   0.0    1.7  1  MaoC_dehydratas  MaoC like domain
    2.1e-06   27.9   0.0    8.6e-06   25.9   0.0    2.0  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
    3.8e-05   23.6  10.0     0.0049   16.8   1.8    2.5  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00051   19.5   4.6       0.22   10.9   0.1    3.5  3  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.081   12.2   8.8       0.15   11.4   0.8    2.9  3  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
       0.13   12.9   1.9       0.53   11.0   0.1    2.9  2  CoA_binding      CoA binding domain
       0.21   11.6   4.5        6.6    6.8   0.4    3.0  2  DUF543           Domain of unknown function (DUF543)
        2.9    8.0   5.7        4.2    7.4   0.4    2.9  3  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   5.7   1.4e-47   2.3e-44       2     182 ..      10     187 ..       9     198 .. 0.94
   2 !  149.8   4.1   3.8e-47   6.2e-44       1     184 [.     309     489 ..     309     497 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 1.4e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +v+vtGa++G+G+a++  +a++Ga+vvv d s++++++v++e+ ++g ka++ ++ v+d    ea++++a++ +g++ +L nNAGi +++ f++++++e
  CDO72475.1  10 TVVVTGAGGGLGKAYSLLFASRGANVVVNDVSQAAAQKVVDEITKAGGKAVTNTASVAD---GEAVIKTAIEAFGNITILLNNAGILRDKGFKNMTDQE 105
                 79********************************************9999999998886...56788999999************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182
                 w++++ v l+g +++++a+ p++ kq  GrIvn++S ag+++++g+a YsA+K +++g+t++la e a+++i+ +++aP + 
  CDO72475.1 106 WDQIMLVHLKGSYSCAKAAWPYFQKQGFGRIVNTASAAGLYGNFGQANYSAAKMGLVGFTKALAAEGARYNIKTMVIAPMAA 187
                 ******************************************************************************9654 PP

  == domain 2  score: 149.8 bits;  conditional E-value: 3.8e-47
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+v++tGa+sG+Gra+a ++a+ Ga+vvv d+ ++ ++ v++ + ++g ka+a+ +   ++e+ ea+v++a +++g+++vLv+NAG+++ ++f++lse+
  CDO72475.1 309 KTVVITGAGSGLGRAYAVHYARLGANVVVNDIDNKLAKSVVDTITKAGGKAVAAVG---SAEDGEAIVKAALDNFGGVHVLVANAGVARLSAFEKLSEK 404
                 79*********************************************999988755...666788999******************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSS CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdT 184
                 +w+++++v l +++++++av p++lkq+ GrIv+++S+ag+++++g+a+Y+++Ka+++g+t++la e ++++i  n+v P++ + 
  CDO72475.1 405 DWDEILAVHLRSTYKCAKAVWPHFLKQKFGRIVTMGSQAGLYGLPGLASYATAKAGIIGFTKTLAIEGKKYNILANVVIPAAASI 489
                 ********************************************************************************98765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   3.4   1.1e-36   1.8e-33       1     179 [.      15     191 ..      15     233 .. 0.91
   2 !  122.8   4.0   9.4e-39   1.5e-35       1     178 [.     315     491 ..     315     496 .. 0.91
   3 ?    1.0   0.0      0.16   2.6e+02     202     232 ..     492     522 ..     489     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 1.1e-36
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   Ga  g+G+a   ++a++Ga+vv+ d++++a +k v+e+++++g++v  ++ ++ ++ ea+++++ e fg++ il+nnagi ++  + f +++++e+d
    CDO72475.1  15 GAGGGLGKAYSLLFASRGANVVVNDVSQAAaQKVVDEITKAGGKAV--TNTASVADGEAVIKTAIEAFGNITILLNNAGILRD--KGFKNMTDQEWD 107
                   7889**************************8899999999888776..567888889999***********************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   +++ v l++ +++akaa p+++++  g+ivn++s ++  +  +++ y+aaK +l+++t++lA+e ++++i+  +++p +    ++
    CDO72475.1 108 QIMLVHLKGSYSCAKAAWPYFQKQgfGRIVNTASAAGLYGNFGQANYSAAKMGLVGFTKALAAEGARYNIKTMVIAPMAAS-AMT 191
                   *******************999988**************************************************998766.333 PP

  == domain 2  score: 122.8 bits;  conditional E-value: 9.4e-39
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   Ga sg+Gra A ++a+ Ga+vv+ d+++++ k+ v+++++++g++v  + V + e+ ea+v+++ ++fg++++lv nag+a+   + f+++s++++d
    CDO72475.1 315 GAGSGLGRAYAVHYARLGANVVVNDIDNKLaKSVVDTITKAGGKAV--AAVGSAEDGEAIVKAALDNFGGVHVLVANAGVARL--SAFEKLSEKDWD 407
                   889***************************6666666666655554..4499*******************************..************ PP

                   HHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG CS
  adh_short_C2  97 raldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla 178
                   ++l+v l+s++++aka+ p  +k++ g+iv++ s ++  ++p+ + y++aKa+++++t++lA e  +++i  N+v p +   +a
    CDO72475.1 408 EILAVHLRSTYKCAKAVWPhFLKQKfGRIVTMGSQAGLYGLPGLASYATAKAGIIGFTKTLAIEGKKYNILANVVIPAAASIEA 491
                   *******************6555559**************************************************98876665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.16
                   B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 202 gtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   ++ e +a ++ fL sd+++ +tG+ +   +G
    CDO72475.1 492 VKEEYIAPLVGFLSSDANEETTGSLFQTAAG 522
                   678899*****************98876666 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   2.9   4.2e-18   6.9e-15       2     168 ..      10     173 ..       9     187 .. 0.82
   2 !   32.9   1.2   3.5e-11   5.6e-08       2     156 ..     310     461 ..     309     480 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 4.2e-18
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t+++tG+ GgLG++ +   a++ga+ +v        ++++++ ++e+++ g +  +  a v+d +av ++   + + +++i+  ++ Ag+lrdk +++m
  CDO72475.1  10 TVVVTGAGGGLGKAYSLLFASRGANVVVNDVS----QAAAQKVVDEITKAGGKAVTNTASVADGEAVIKT---AIEAFGNITILLNNAGILRDKGFKNM 101
                 689********************987765333....4677889***************9**999887554...445579******************** PP

                 -HHHHHHHHTTTTHHHHHHHHH....TTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhel....ledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqgl 168
                 t+++++q++   +kG+    ++    ++++    +v ++S+agl+g++gqanY+aa   l ++ +  +++g+
  CDO72475.1 102 TDQEWDQIMLVHLKGSYSCAKAawpyFQKQGFGRIVNTASAAGLYGNFGQANYSAAKMGLVGFTKALAAEGA 173
                 ***************9888776222267799999**********************8755555554444443 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 3.5e-11
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t++itG+  gLG++ a + a+ ga+ +v        ++ +k+ ++++++ g +  +    v ++++ ea+++++ ++++ ++  +  Agv+r +++e++
  CDO72475.1 310 TVVITGAGSGLGRAYAVHYARLGANVVVND----IDNKLAKSVVDTITKAGGKAVA---AVGSAEDGEAIVKAALDNFGGVHVLVANAGVARLSAFEKL 401
                 689********************9877643....4567888899999999887654...4789999999****************************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNafl 156
                 +++d++++la  ++ +    +++ +    ++   +v++ S agl+g +g a+Ya+a a +
  CDO72475.1 402 SEKDWDEILAVHLRSTYKCAKAVWPhflkQKFGRIVTMGSQAGLYGLPGLASYATAKAGI 461
                 *********9999888776666544344499999*********************98755 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.5e-20   2.4e-17       4      84 ..     773     847 .]     770     847 .] 0.91

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.5e-20
                      CCTTSEEEEEEEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEE CS
  MaoC_dehydratas   4 naigekvetekeitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvr 84 
                      +++++ +++  e ++   ++aly+l sgD+np+H+ pefA+++gf++pI+hG+++++i+ k+v + +g+     ++ ikvr
       CDO72475.1 773 KPPQRRPDAVLEEKTLTIQAALYRL-SGDTNPLHILPEFAAVGGFDKPILHGLCSMGISGKHVLKSFGE-----YKDIKVR 847
                      4688999999999999*********.***************************************9999.....6666665 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.3e-09   8.6e-06       8     129 ..     615     733 ..     610     736 .. 0.81
   2 ?   -1.9   0.0       2.1   3.4e+03      26      48 ..     798     820 ..     795     825 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.3e-09
  MaoC_dehydrat_N   8 epvkaevereavrefakavgetnpa.yldeeaaraagyrsliaPptflivlatkap...ellealgidlsrllhgeqefeyhepiraGDeltte 97 
                      e+++++ ++++v  +   vg+t++   +  e+     ++ + a ptf ++ +++a    +l      + ++llhgeq +e ++pi  ++el  e
       CDO72475.1 615 EQTEYSYTERDVILYNLGVGATEQElQWTYEN-----HENFAALPTFGVIPQFQASaglSLDWLPNFNPAKLLHGEQYLEIKAPIPTSGELVNE 703
                      56789999999999999999999554899888.....79**********9999886553333555899************************** PP

  MaoC_dehydrat_N  98 sriadvydkkgvGalefivvettvtnqr.Gepv 129
                      +r+ +v dk   G+++ ++v  ++ +++ G+++
       CDO72475.1 704 ARLMEVLDK---GKAAAVTVVVETKDKHsGKVI 733
                      ********9...777777777666666525555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
  MaoC_dehydrat_N  26 vgetnpayldeeaaraagyrsli 48 
                       g+tnp+++ +e a+  g++++i
       CDO72475.1 798 SGDTNPLHILPEFAAVGGFDKPI 820
                      699*********99999999876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.8     3e-06    0.0049       1      52 [.      10      62 ..      10      88 .. 0.83
   2 !   11.2   1.4   0.00016      0.26       2      51 ..     311     361 ..     310     402 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
                EEEEE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTT CS
     3HCDH_N  1 kvaviGa.GtmGagiaavfasagleVvlvdiseealekalekieksleklvek 52
                +v v Ga G +G+    +fas+g +Vv+ d+s++a++k+ ++i+k   k+v +
  CDO72475.1 10 TVVVTGAgGGLGKAYSLLFASRGANVVVNDVSQAAAQKVVDEITKAGGKAVTN 62
                5889999678*********************************9966555544 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00016
                 EEEE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTT CS
     3HCDH_N   2 vaviGaGt.mGagiaavfasagleVvlvdiseealekalekieksleklve 51 
                 v + GaG  +G+  a   a+ g +Vv+ di+++ ++++ ++i+k   k+v+
  CDO72475.1 311 VVITGAGSgLGRAYAVHYARLGANVVVNDIDNKLAKSVVDTITKAGGKAVA 361
                 8899999769********************************995554443 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3     0.009        15      33      74 ..       5      47 ..       1      70 [. 0.80
   2 !   10.9   0.1   0.00013      0.22      24      71 ..     296     344 ..     282     390 .. 0.85
   3 ?    3.5   0.0     0.025        40     129     151 ..     698     720 ..     696     740 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.009
                  -GTTSEEEEES-S.HHHHHHHHHHHHTT-EEEEESSSHHHHHC CS
  2-Hacid_dh_C 33 elsgktvGiiGlG.rIGqavakrlkafgmkviaydrskkkeee 74
                  + +g tv + G+G  +G+a   ++++ g++v++ d+s+ + ++
    CDO72475.1  5 SFKGHTVVVTGAGgGLGKAYSLLFASRGANVVVNDVSQAAAQK 47
                  67899******9637**********************886663 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00013
                   HTTCCGSBS-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHH CS
  2-Hacid_dh_C  24 ksekallgkelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkk 71 
                   ++e+a +  +  gktv i G+G+ +G+a a   + +g++v++ d  +k 
    CDO72475.1 296 SNEQASPEVRFDGKTVVITGAGSgLGRAYAVHYARLGANVVVNDIDNKL 344
                   567778888999**********769******************998764 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.025
                   GGGB-HHHHHHHHHTTSCCEEEE CS
  2-Hacid_dh_C 129 GglvdeeaLleaLksgkiagaal 151
                   G+lv+e+ L+e+L++gk a++ +
    CDO72475.1 698 GELVNEARLMEVLDKGKAAAVTV 720
                   99***************996554 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   9.2e-05      0.15      31     112 ..       3      80 ..       1     103 [. 0.80
   2 ?    5.1   0.2    0.0077        13      31      76 ..     303     348 ..     299     376 .. 0.73
   3 ?   -1.7   0.1      0.98   1.6e+03      75     100 ..     474     499 ..     457     501 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.2e-05
                    T---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGGS-TT-EEEE---EEC CS
  THF_DHG_CYH_C  31 gielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikaemvkegavviDvGinrv 112
                    + + +g++vvv G++  +gk+ +ll+++++a V v + +    ++++ e   + + +G + + +   v +g +vi   i+  
     CDO72475.1   3 QLSFKGHTVVVTGAGGGLGKAYSLLFASRGANVVVNDVSQAAAQKVVDE---I-TKAGGKAVTNTASVADGEAVIKTAIEAF 80 
                    56789****************************9998887777766655...4.4455555677788888888888877766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0077
                    T---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHH CS
  THF_DHG_CYH_C  31 gielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaei 76 
                    ++  +gk+vv+ G+++ +g++ a+  ++ +a V v +   k  +++
     CDO72475.1 303 EVRFDGKTVVITGAGSGLGRAYAVHYARLGANVVVNDIDNKLAKSV 348
                    57789***********************999998887766433332 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.98
                    HHHCCSSEEEE-SS-TT-B-GGGS-T CS
  THF_DHG_CYH_C  75 eitreadivvvavGkpelikaemvke 100
                    ++   a++v+ a+ + e +k+e++ +
     CDO72475.1 474 KYNILANVVIPAAASIEAVKEEYIAP 499
                    5566799**************99975 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00032      0.53      60      95 ..      30      65 ..      10      66 .. 0.88
   2 ?   -0.7   0.1       1.4   2.3e+03      62      91 ..     332     361 ..     309     365 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
                 HCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESS CS
  CoA_binding 60 ktevdvavitvPaesaqeavdelveagikgiviite 95
                 + +++v v  v++++aq++vde  +ag k + + ++
   CDO72475.1 30 SRGANVVVNDVSQAAAQKVVDEITKAGGKAVTNTAS 65
                 44699**************************99875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
                  TTTEEEEES-HHHHHHHHHHHHHTT-SEEE CS
  CoA_binding  62 evdvavitvPaesaqeavdelveagikgiv 91 
                  +++v v  + ++ a+++vd   +ag k ++
   CDO72475.1 332 GANVVVNDIDNKLAKSVVDTITKAGGKAVA 361
                  455666666667777777777777777765 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.014        23      53      67 ..      11      25 ..       2      29 .. 0.86
   2 ?    6.8   0.4    0.0041       6.6      53      67 ..     311     325 ..     307     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
      DUF543 53 pvalGaGvGiGaAYt 67
                +v+ GaG G+G+AY+
  CDO72475.1 11 VVVTGAGGGLGKAYS 25
                6889**********7 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0041
      DUF543  53 pvalGaGvGiGaAYt 67 
                 +v+ GaG G+G+AY+
  CDO72475.1 311 VVITGAGSGLGRAYA 325
                 7999**********7 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.4    0.0026       4.2       9      70 ..       5      64 ..       1      92 [. 0.79
   2 ?   -0.5   0.1      0.71   1.2e+03       9      41 ..     305     337 ..     298     355 .. 0.68
   3 ?    1.7   0.1      0.15   2.4e+02       3      56 ..     345     401 ..     343     424 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0026
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHH CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelk 70
                  s+k+++v++ GaG    ++ + L a++  +vvv   +++ a+++++e+ ++    +++++  
    CDO72475.1  5 SFKGHTVVVTGAGGGLGKAYSLLFASRGANVVVNDVSQAAAQKVVDEITKA--GGKAVTNTA 64
                  57899*********9999*****9999999*****************9655..445555554 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.71
                   ..TT-EEEEES-SH.HHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH   9 slkekkvlliGaGe.maelvakhLlakgvkkvvv 41 
                   ++++k+v++ GaG  +++  a h ++ g++ vvv
    CDO72475.1 305 RFDGKTVVITGAGSgLGRAYAVHYARLGAN-VVV 337
                   57899********74566666666666666.444 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.15
                   HHHHHS.....TT-EEEEES-SHHHHHHHHHHHCC.T-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH   3 akkkle...slkekkvlliGaGemaelvakhLlak.gvkkvvvaNRtlerakelaeel 56 
                   ak+ ++   +  +k v  +G  e +e ++k+ l++ g  +v+vaN  ++r +++ + l
    CDO72475.1 345 AKSVVDtitKAGGKAVAAVGSAEDGEAIVKAALDNfGGVHVLVANAGVARLSAFEK-L 401
                   55555543355678899999999999999975554477789999999999887743.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5774.52
//
Query:       CDO72476.1  [L=358]
Description: hypothetical protein BN946_scf184980.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-40  138.8   0.0    1.2e-28  100.4   0.0    2.1  2  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.5e-13   2.7e-09       1      71 [.      12      75 ..      12      81 .. 0.87
   2 !  100.4   0.0   6.5e-33   1.2e-28     127     348 ..      82     314 ..      79     323 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.5e-13
  CoA_transf_3  1 LaGvrVldlsq.....vlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlk 71
                  L+G++V+++s      +  Gp+a+++LAd+GA+VI++++p++               s +  +++r+Krs+a+D k
    CDO72476.1 12 LEGIKVVEVSIdtfagLAPGPMAGMILADFGADVIRIDRPSQ------------AAPSPAPDVLARGKRSIAIDPK 75
                  89******99988888999*********************22............256778899***********87 PP

  == domain 2  score: 100.4 bits;  conditional E-value: 6.5e-33
  CoA_transf_3 127 GpkakrpgyDlvaqaasGlmsltgepdgpPvkvgvplgDi.vtgllaavailaallarertGkGqvidvslleaalallapqlley.latgevperq 221
                   G+++ ++g+Dl++ a sG++s+   + ++P  + + l+D+  +gl++a +il+al++r r G+Gqv+d+ ++ ++  l+++ ll   l t +   r+
    CDO72476.1  82 GSHKGMAGHDLNYLALSGVLSMLPGE-RKPEFPLNILADFaGGGLMCATGILLALMERTRSGRGQVVDADMVSGVRYLSSFPLLLSqLCTPHFGDRR 177
                   88999*****************8654.56677777777774789*********************************99998855445555555444 PP

  CoA_transf_3 222 ..gnrdpaaapygvyrtkdg.wvaiaaatdkqwaalck.algrpe...laedprfatnasrlenr....aeldaelaewlaertaaewlellaaagv 307
                     g  d +a++y+vy+++dg w+++++ ++++++++++ ++g+       ed    +++++         +l+  +++ +a ++++ w++l+++ + 
    CDO72476.1 178 gaGLLDGGAPFYNVYTCADGrWMSVGCLEPQFFREFLRrFIGALPpgfALEDGWRPSEDDQH--DpnlwPRLKTFMDRGFALQPRDYWAKLFDRSDA 272
                   2377788*****************************99888875557744555555555533..33478**************************** PP

  CoA_transf_3 308 paapvntleevld.dpqlaarglvvevddpdygevpvvglpv 348
                   +a pv ++ee+++ ++    rg  v  ++p+++++p v+  +
    CDO72476.1 273 CAVPVLSVEEAAAlAKSSSSRGGPVPAPHPTLERTPSVAPLP 314
                   ***********996888899999*******998888776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2456.60
//
Query:       CDO72477.1  [L=630]
Description: hypothetical protein BN946_scf184980.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-13   49.0   0.0    3.5e-12   46.3   0.0    2.1  1  Drf_GBD   Diaphanous GTPase-binding Domain


Domain annotation for each model (and alignments):
>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     2e-16   3.5e-12      12     186 ..      70     324 ..      60     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2e-16
     Drf_GBD  12 lFeelleelnlpeekreallalpiekKwqlvvqdkkkkakke......................................................... 53 
                  F+ ll++l++p   r +l++++++ K+ +  + +   +  +                                                         
  CDO72477.1  70 DFDRLLDDLQIPPTLRPKLATMDPTVKAAFLKSSHVLAQMRPvanppltprglrkahsseslasmasprpkkpsleqydlspapsrqyatghsrgvsid 168
                 588889999999999999999999999988888877666666888889999999999999999999999999999999999999999999999999999 PP

     Drf_GBD  54 ..............eklsksksksneeespesyvkklkddslke...kqlesLrVaLrtqplsWvkrFieleGlvaLlnvLskinekkaee.eedlkke 134
                                 + ++++k+    spe yv  l  +s++    +++++Lr  Lr++  sW   F+ ++G  a+l  L++i + + +e ++d +  
  CDO72477.1 169 mrrqpvnvkpvpiaPLKPNKEKKKAIAISPERYVSILLGHSSTVldvEVVKKLRLLLRNEAASWTDVFVRAGGYDAILTRLNEILDVEWREeQHDDQML 267
                 9999999999988644445566777889*********9999999999**********************************9998766544389999** PP

     Drf_GBD 135 yeiikClKalmNnkvGldavla.hksvikllaqsldser....lktrklvlelLtal 186
                 +e+++C Kal  + vG +a  a +++  + l+  l+s++    + tr+l++elL  l
  CDO72477.1 268 HELLRCVKALTTSVVGCNALRAsCPEPWDKLVVLLYSDKrpgeIATRQLIIELLRSL 324
                 *****************9876669999999999999986333379999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4379.72
//
Query:       CDO72478.1  [L=433]
Description: hypothetical protein BN946_scf184980.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3121.03
//
Query:       CDO72479.1  [L=333]
Description: hypothetical protein BN946_scf184980.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-31  109.1   0.0    2.3e-31  108.6   0.0    1.2  1  CRAL_TRIO    CRAL/TRIO domain
    8.4e-14   51.5   1.8    1.2e-13   51.0   0.0    2.2  3  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
     0.0033   17.6   0.0     0.0056   16.8   0.0    1.4  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   3.9e-35   2.3e-31       4     159 .]     117     260 ..     114     260 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 3.9e-35
   CRAL_TRIO   4 leggkvgihgrDkegrpvlylrlgrfdpkklsleelvralvlvlerllkeleedgqvegvtvviDlkglslskmlwkp.isllkkilkilqdnyperlg 101
                 + +gk +i g+D ++rp +ylr++r++++++   ++v+++v+ lerl +++ +  ++e++++++D+ +   ++    p ++++k++l+ilq++yperlg
  CDO72479.1 117 AVTGKMVIWGYDTDHRPAIYLRPSRQNTEESI--RQVHYVVWALERLTELMGP--GIETLALMVDFADRA-KN----PsLGQAKRVLDILQTHYPERLG 206
                 56899************************999..9*************99999..*************99.44....44******************** PP

   CRAL_TRIO 102 kilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                 ++l+vn+P+l++++fkl+ pf+d+ tr K++f+   ++    e  + peql +e+GG+
  CDO72479.1 207 RALVVNVPFLVNAFFKLITPFIDPLTRPKLRFN--PDCL--GEGLFMPEQLLSEWGGS 260
                 *********************************..5674..89999**********95 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0     2e-17   1.2e-13       2      53 ..      38      93 ..      37      94 .. 0.94
   2 ?   -3.7   0.1       2.5   1.5e+04      18      23 ..     266     271 ..     260     275 .. 0.74
   3 ?   -1.7   0.0      0.57   3.4e+03      41      50 ..     299     308 ..     299     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2e-17
  CRAL_TRIO_N  2 ydellahlqeseyk........lteeekfWltredhddaclLRfLRArkw.dvekAikrLe 53
                 yde+l+h+ +++y         lt+eekfWl+ e     c+LRf RA kw    +AikrLe
   CDO72479.1 38 YDEVLKHFDKEDYVlpgvddgaLTDEEKFWLSCE-----CILRFIRAVKWaSPLAAIKRLE 93
                 9*********************************.....***********55558899997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.5
  CRAL_TRIO_N  18 eeekfW 23 
                  e+ek W
   CDO72479.1 266 EHEKYW 271
                  699999 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.57
  CRAL_TRIO_N  41 rkwdvekAik 50 
                  r+wdv+ A++
   CDO72479.1 299 REWDVKCAVE 308
                  89***98876 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.4e-07    0.0056      49     129 ..     180     258 ..     139     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.4e-07
  CRAL_TRIO_2  49 ssenkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyvsrleeLarkid.rtqllkslP 129
                  ++ ++psl+ +k+v+++l+ +y+++l +  +v+  + v +++  + ++f  +  r k+++  +   L ++++ ++qll++ +
   CDO72479.1 180 DRAKNPSLGQAKRVLDILQTHYPERLGRALVVNVPFLVNAFF-KLITPFIDPLTRPKLRF--NPDCLGEGLFmPEQLLSEWG 258
                  3479**************************************.78888878877888776..34445556666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2195.76
//
Query:       CDO72480.1  [L=91]
Description: hypothetical protein BN946_scf184980.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-12   46.7   0.2    5.1e-12   45.7   0.2    1.5  1  Complex1_LYR    Complex 1 protein (LYR family)
    0.00049   20.8   1.5     0.0006   20.5   1.5    1.2  1  Complex1_LYR_2  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.2   5.7e-16   5.1e-12       2      54 ..       9      59 ..       8      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 5.7e-16
  Complex1_LYR  2 qvLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgr 54
                  +++sLY+ l R +r +pd+    +f  + R  F+kn++++Dp++ie+++k g+
    CDO72480.1  9 RAISLYKELHRLGREYPDPA--YNFHKKLRGLFEKNRNLSDPQEIEKAIKLGE 59
                  789*****************..9***************************986 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.5   6.7e-08    0.0006       2      50 ..      11      58 ..      10      83 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.7e-08
  Complex1_LYR_2  2 lsLYrrllrelrelppelrslgdayvraefrrhkhlknpeeialflknq 50
                    +sLY++l r+ r ++p++   ++ ++r  f+++++l++p+ei + +k  
      CDO72480.1 11 ISLYKELHRLGR-EYPDPAYNFHKKLRGLFEKNRNLSDPQEIEKAIKLG 58
                    89*********9.9999*************************9777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 691.50
//
Query:       CDO72481.1  [L=433]
Description: hypothetical protein BN946_scf184980.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3092.37
//
Query:       CDO72482.1  [L=398]
Description: Glycoside Hydrolase Family 17 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-07   30.0   6.6    1.1e-05   25.2   6.6    2.7  1  Glyco_hydro_17  Glycosyl hydrolases family 17


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   6.6   6.2e-10   1.1e-05     229     308 ..     317     391 ..     118     393 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.2e-10
  Glyco_hydro_17 229 tdielvvsEtGWPsdGs.tga.slenaatyveNlikkvkeGtpskpgkgietyvfalFdEnqKpees..vekhfGvfkpdkslk 308
                     ++ ++ ++EtGWP++ +  g+ s + ++++  Nl    k+Gt          + f+ FdE +K+e+   ve h+G+f ++++lk
      CDO72482.1 317 NQPRFFIAETGWPTASKdAGNeSNGPSIASEPNLQ-ANKNGT--------GYFFFEYFDETWKDEQFggVEGHWGLFYSNRTLK 391
                     45589*********999544413344566666663.445555........479************8667**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2748.31
//
Query:       CDO72483.1  [L=442]
Description: hypothetical protein BN946_scf184980.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-38  132.0   0.0    2.8e-38  131.1   0.0    1.4  1  RhoGAP    RhoGAP domain
     0.0093   15.6   0.6         12    5.4   0.0    2.3  2  Spt20     Spt20 family
  ------ inclusion threshold ------
      0.076   12.9   0.0       0.17   11.8   0.0    1.5  1  DUF1899   Domain of unknown function (DUF1899)
        0.1   11.7   0.0        0.1   11.7   0.0    1.5  2  DUF1708   Domain of unknown function (DUF1708)


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.0   6.3e-42   2.8e-38       1     149 [.     117     271 ..     117     274 .. 0.94

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 6.3e-42
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT....TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHH..HHTSSSHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds....dleeedvhavaslLKrfLrelpepLltkelyeelie..aaksedeeerl 93 
                 P++v+kc  ++++++ ++ g +Rvsgs++r++el++af++ ++  +    + e+++ h+vas+++r+L ++pep++++++y+ + +  a k  +++e +
  CDO72483.1 117 PVVVAKCGLYLKENATEVAGTFRVSGSTKRMRELQAAFETPPRYGKnldwKKENYTTHDVASVFRRYLTQMPEPVIPHDMYHLFRDalAKKPFNQDEVI 215
                 99*****************************************999999999999******************************6434444688888* PP

                 HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TSS CS
      RhoGAP  94 ealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpkse 149
                   +k+l++ +P++n+ +L y+l++L+ +a++s++n MtaknLa++f P L+ ++s+
  CDO72483.1 216 ATYKRLIRAMPRANQYLLLYVLDLLSVFARKSDKNLMTAKNLAVIFRPALIAHPSH 271
                 ****************************************************9986 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0  15.8         4   1.8e+04      92     139 ..       7      46 ..       1      60 [. 0.39
   2 !    5.4   0.0    0.0027        12      19      87 ..      59     214 ..      51     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: -7.0 bits;  conditional E-value: 4
       Spt20  92 rDhrnsvaqsqktqdqkqsq.qnqqqqqqqqqqqqqqqqqqeqqqqqne 139
                 + h + ++q          +  ++q+ q +++   qqq +++++ +q +
  CDO72483.1   7 SQHPQQHQQP---------PdEQPQNRQDEHRRHFQQQYSYQTHPSQPS 46 
                 2222222222.........133333333333333333333333333333 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0027
       Spt20  19 hlypnhfrfslklnlqsqekkkenss......................................................................... 44 
                 + + nhf+f  k++   +ekk+e +                                                                          
  CDO72483.1  59 KAWWNHFTFAQKIKKDADEKKEEEHHvfgkplkeslkyasvqistanangelyvwgyipvvvakcglylkenatevagtfrvsgstkrmrelqaafetp 157
                 567799999888887777777777778999999999999999999999999999999999999999999999999************************ PP

       Spt20  45 ....eslrlpynselkelleyvdreti........PealmelLrdan..ikfYeGcl 87 
                     + l++++++ + +   +v r+++        P++++ l+rda     f ++ +
  CDO72483.1 158 prygKNLDWKKENYTTHDVASVFRRYLtqmpepviPHDMYHLFRDALakKPFNQDEV 214
                 ****99*******9988888899999999999999********99643344555555 PP

>> DUF1899  Domain of unknown function (DUF1899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.17       8      33 ..      82     107 ..      78     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
     DUF1899   8 fRhvfgkpakkeecydnirvsknawd 33 
                 ++hvfgkp+k+ + y ++++s+   +
  CDO72483.1  82 EHHVFGKPLKESLKYASVQISTANAN 107
                 58*******************98665 PP

>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.1       1.5   6.6e+03     341     357 ..      44      68 ..       5      90 .. 0.36
   2 ?   11.7   0.0   2.3e-05       0.1      76     157 ..     176     259 ..     138     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.5
     DUF1708 341 e...........rpttpsWadflssglk 357
                 +               + W +f +  ++
  CDO72483.1  44 QpshdsalaptkASLKAWWNHF-T--FA 68 
                 1233445533311122223333.2..22 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.3e-05
     DUF1708  76 LisvlkylWsrlpggvvgwdaYeeFkkkEkeselprdaFltfipkslss..earasivydFldLlvaiaahgkknglggrklsr 157
                 + sv +   +++p+ v+++d+Y+ F+ + +++ +++d      ++ +    +a++  +   ldLl+  a ++ kn ++++ l+ 
  CDO72483.1 176 VASVFRRYLTQMPEPVIPHDMYHLFRDALAKKPFNQDEVIATYKRLIRAmpRANQYLLLYVLDLLSVFARKSDKNLMTAKNLAV 259
                 56677777899*************************9888877777765325666677889******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2847.41
//
Query:       CDO72484.1  [L=377]
Description: hypothetical protein BN946_scf184980.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2750.44
//
Query:       CDO72485.1  [L=304]
Description: hypothetical protein BN946_scf184980.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   10.7   6.9       0.45    9.1   0.0    2.1  2  Dor1             Dor1-like family
       0.26   10.6   5.1       0.47    9.8   5.1    1.3  1  DUF4407          Domain of unknown function (DUF4407)
        0.7    9.8  16.2       0.18   11.7  12.4    1.8  2  DASH_Spc19       Spc19
        1.2    9.3  11.2       0.78    9.9   7.5    2.2  2  Med9             RNA polymerase II transcription mediator com
        1.5    8.1   8.2          3    7.1   8.2    1.4  1  Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
        1.8    8.8  19.9      0.079   13.1   9.5    3.1  3  Cnn_1N           Centrosomin N-terminal motif 1
          3    8.8   7.1        5.7    7.9   7.1    1.4  1  DUF1764          Eukaryotic protein of unknown function (DUF1
        4.5    7.1  12.7       0.85    9.4   8.4    1.8  2  DUF724           Protein of unknown function (DUF724)
        4.8    7.8   7.4         12    6.5   7.4    1.8  1  COX16            Cytochrome c oxidase assembly protein COX16
          6    5.3  14.1       0.79    8.2   9.9    1.5  2  LCD1             DNA damage checkpoint protein
        7.2    6.6   6.8        1.3    9.0   0.2    2.6  2  CSN7a_helixI     COP9 signalosome complex subunit 7a helix I 


Domain annotation for each model (and alignments):
>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00028      0.45     267     319 ..      69     120 ..      41     128 .. 0.85
   2 ?    2.1   4.4     0.038        62      42     109 ..     215     280 ..     211     304 .] 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00028
        Dor1 267 swvlskissflqtlermlkrgievslekvldqlmyfaksfgrvgaDfrallpp 319
                 +  l++i ++l+t++r  + + ev+++++ d +   ++s++    D++  +pp
  CDO72485.1  69 Q-SLQQIHQNLDTITRVFPGSQEVRRRQLKDLMLTLLSSLQEHQMDLEDAIPP 120
                 3.689***********************8888888999**********99997 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.038
        Dor1  42 idaaealeairqelediraqledLvlklpkLteectrfskkaeeisek.....rkenkllldkheqllellel 109
                 +       +  +e e+++ +++ L+ ++  L+e+ ++ +++ ++ +ek     ++e++ l ++ ++++++le+
  CDO72485.1 215 A-------DANKEKEKSKTEVAGLRAQIQLLQESLENERAERKRKVEKekeerKREVNNLREERKRMVNDLEV 280
                 3.......44455555556666666666666666666666555555555554488888899999999999987 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.1   0.00029      0.47     130     219 ..     205     299 ..     187     302 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00029
     DUF4407 130 a....ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.atarlaalrael 219
                 +    l++++a+++++ ++ ++e++ ++a+++ l++ +++e    k + ++ ++ +  +  + +++ ++  ++l+ +ka    ++a+l++++a+l
  CDO72485.1 205 TssppLEKQIADANKEKEKSKTEVAGLRAQIQLLQESLENERAERKRKVEKEKEERKREVNNLREERKRMVNDLEVWKALTLkRDADLTERNAQL 299
                 34455778888888888888888888888888888888888888774444445555555555555555555555555553112788887777775 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.94   1.5e+03       5      17 ..      68      80 ..      57     120 .. 0.62
   2 ?   11.7  12.4   0.00011      0.18      62     150 ..     207     299 ..     201     304 .] 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.94
                HHHHHHHHHHHHH CS
  DASH_Spc19  5 vsSLrssvslLqs 17
                v+SL+++ ++L++
  CDO72485.1 68 VQSLQQIHQNLDT 80
                4444444444432 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX....XXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19  62 ePqieellekaekeleklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk....ltkeelerlkkLkqkKerL 150
                  P +e+++  a+ke ek +++   L+a+++l++  l+n+++++k++ e+e++++++e ++ +ee+k+  +     ++  l+r  +L ++  +L
  CDO72485.1 207 SPPLEKQIADANKEKEKSKTEVAGLRAQIQLLQESLENERAERKRKVEKEKEERKREVNNLREERKRMVNdlevWKALTLKRDADLTERNAQL 299
                 68999*********************************9888888888887777666666555555443355554444445555566666665 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.46   7.5e+02       4      32 ..      45      72 ..      42      99 .. 0.57
   2 ?    9.9   7.5   0.00048      0.78      11      68 ..     212     273 ..     206     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.46
        Med9  4 Pliydilksiekdpnlsskdletktgelr 32
                P+ + i++ + k+  ++ ++l   +++l+
  CDO72485.1 45 PEHVRIIRVVLKAD-NEHQKLLELVQSLQ 72
                66666666665555.33333322222222 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00048
        Med9  11 ksiekdpnlsskdletktgelrhkLkkarelirelpg.....idrsveeqeaeieeleeqlak 68 
                 k+i +++ ++ ++ +t++++lr +++   e +++        +++ +ee+++e+++l+e+ ++
  CDO72485.1 212 KQIADAN-KEKEKSKTEVAGLRAQIQLLQESLENERAerkrkVEKEKEERKREVNNLREERKR 273
                 7788888.999**********************977799*******************99775 PP

>> Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.2    0.0018         3     154     229 ..     211     282 ..     206     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
  Phlebovirus_NSM 154 dktisrktkesEediknqvl..hseieqlknelqkkRndikrgqekrdakklveesmArvkdlkeelkiltdelsqik 229
                      +k i    ke E+ +k+ v+    +i++l++ l+  R +     +kr ++k  ee +  v++l+ee k + ++l+  k
       CDO72485.1 211 EKQIADANKEKEK-SKTEVAglRAQIQLLQESLENERAE-----RKRKVEKEKEERKREVNNLREERKRMVNDLEVWK 282
                      6778888899998.9999963368899999988866666.....999*********************9999887655 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.8      0.18     3e+02      31      69 ..      72     117 ..      55     118 .. 0.66
   2 ?   13.1   9.5   4.9e-05     0.079       9      66 ..     221     278 ..     208     284 .. 0.87
   3 ?   -2.0   0.0       2.5   4.1e+03      39      51 ..     290     302 ..     285     304 .] 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.18
      Cnn_1N  31 eklse.........eqkeellkenielkveveslqkelkekkkllrea 69 
                 +++++           ++e+ +   +lk+ + +l  +l+e +  l++a
  CDO72485.1  72 QQIHQnldtitrvfPGSQEVRR--RQLKDLMLTLLSSLQEHQMDLEDA 117
                 4444444444444444444444..789999999999999999888876 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.9e-05
      Cnn_1N   9 idkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkll 66 
                  +k k E  +L+ +i+ L+e le+ + e k++++ke  e k ev +l+ e k++ + l
  CDO72485.1 221 KEKSKTEVAGLRAQIQLLQESLENERAERKRKVEKEKEERKREVNNLREERKRMVNDL 278
                 5666889999****************************************88776554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
      Cnn_1N  39 eellkenielkve 51 
                  +l + n +lkv 
  CDO72485.1 290 ADLTERNAQLKVC 302
                 5788889999985 PP

>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.1    0.0035       5.7      16      80 ..     216     287 ..     204     296 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0035
     DUF1764  16 seskkkkkekekeeeee..........ekekkkkskkkkkkkkkkeeekkfedseskkrrktedGlpvYteeeLg 80 
                 +++k+k+k+k+++   +          e+ +++++++k+k +k+kee+k+ +++ +++r+++ + l v+++  L+
  CDO72485.1 216 DANKEKEKSKTEV---AglraqiqllqESLENERAERKRKVEKEKEERKREVNNLREERKRMVNDLEVWKALTLK 287
                 3333333333322...123456788754444444444444444444444444444799999*******9987776 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         1   1.7e+03      96     117 ..      63      84 ..      49     119 .. 0.50
   2 ?    9.4   8.4   0.00052      0.85     114     173 ..     210     277 ..     202     283 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
      DUF724  96 kLlslkdeqtklleerkklekk 117
                 kLl+l ++ +++++++  + + 
  CDO72485.1  63 KLLELVQSLQQIHQNLDTITRV 84 
                 4444444444444444443333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00052
      DUF724 114 lekkieeeesekrkleeeidelekkilelerqlallk........ekkeaadkeiarlkseaekleee 173
                 lek+i+++++ek+k ++e++ l  +i+ l++ l+  +        ++ke+ ++e+ +l+ e +++ ++
  CDO72485.1 210 LEKQIADANKEKEKSKTEVAGLRAQIQLLQESLENERaerkrkveKEKEERKREVNNLREERKRMVND 277
                 89*************************99999999988555555555555555555555555555444 PP

>> COX16  Cytochrome c oxidase assembly protein COX16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.4    0.0073        12      28      76 ..     246     288 ..     211     291 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0073
       COX16  28 vrdrkvkelskeealelkkkrrkv.dleeeyerlqakldlddWenkRvpR 76 
                 + +r +++++ke+    ++++r+v +l+ee++r+++  dl+ W+    +R
  CDO72485.1 246 RAER-KRKVEKEK----EERKREVnNLREERKRMVN--DLEVWKALTLKR 288
                 1111.23333333....35566667***********..899999877776 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.84   1.4e+03     533     544 ..      62      73 ..      36     117 .. 0.46
   2 ?    8.2   9.9   0.00048      0.79       2      41 ..     231     270 ..     231     278 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.84
                 HHHHHHTTHHHH CS
        LCD1 533 aeaakLvdklre 544
                 ++  +Lv++l++
  CDO72485.1  62 QKLLELVQSLQQ 73 
                 222222222222 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        LCD1   2 LrdkLelLeqekekeleklknskkqlkesheeelekLkke 41 
                 Lr++++lL+++ e+e++++k++ +++ke+ ++e+++L++e
  CDO72485.1 231 LRAQIQLLQESLENERAERKRKVEKEKEERKREVNNLREE 270
                 8*************************************98 PP

>> CSN7a_helixI  COP9 signalosome complex subunit 7a helix I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00077       1.3      23      38 ..     210     225 ..     209     236 .. 0.85
   2 ?   -0.9   2.0      0.99   1.6e+03      36      47 ..     245     256 ..     241     266 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00077
  CSN7a_helixI  23 iEtqverANaeknkai 38 
                   +E+q++ AN+ek+k+ 
    CDO72485.1 210 LEKQIADANKEKEKSK 225
                   69**********9975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.99
  CSN7a_helixI  36 kaikhkekieqE 47 
                   +++++k k+e+E
    CDO72485.1 245 ERAERKRKVEKE 256
                   566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2509  (0.139941); expected 358.6 (0.02)
Passed bias filter:                      871  (0.0485805); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 2275.65
//
Query:       CDO72486.1  [L=276]
Description: hypothetical protein BN946_scf184980.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   41.5   0.1    2.1e-10   40.9   0.1    1.2  1  Ferritin_2  Ferritin-like domain
  ------ inclusion threshold ------
       0.09   12.3   0.0       0.14   11.7   0.0    1.2  1  DUF5039     Domain of unknown function (DUF5039)


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   2.3e-14   2.1e-10       2      81 ..      41     122 ..      40     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.3e-14
  Ferritin_2   2 dvdiLnfAlnlEyleaafYtaalegasldd..kalldaevrevaeeiakheeaHveflkaaleGaaavakptfdfafdpfad 81 
                 d++ L+ Al  Ey+e + ++++l+++s +d  +a+l+a++r ++e +a++e++H+++l++ l+ ++a ++++++++f++++d
  CDO72486.1  41 DFQSLSLALYQEYIELDLFHHGLAQFSTEDfdAAGLNAQDRYLIEFMADQEVGHASLLSNILGPDSAAKQCNYTYPFQTVHD 122
                 7889************************99********************************767778*******8888776 PP

>> DUF5039  Domain of unknown function (DUF5039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.5e-05      0.14      20      51 ..     121     152 ..     117     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
     DUF5039  20 keyswllveayadyceannkyisindvdylki 51 
                 ++ sw l + y+  c +nn ++ +++ + l+i
  CDO72486.1 121 HDMSWTLLAPYITSCPENNTHLVWQNFPALNI 152
                 689***********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2114.87
//
Query:       CDO72487.1  [L=372]
Description: hypothetical protein BN946_scf184980.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-103  346.7   0.0   1.7e-103  346.5   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.5   0.0  9.5e-108  1.7e-103       2     342 .]       9     341 ..       8     341 .. 0.93

  Alignments for each domain:
  == domain 1  score: 346.5 bits;  conditional E-value: 9.5e-108
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvv 98 
                   LF+Pi++g+ +L +R+v ap+tr+ra d   v +dl  eyy+qr + p+tl+itea+f++++ gg +n pgiw++ qi++w+k+t+avh++gs++  
    CDO72487.1   9 LFQPIQVGDIKLAHRVVLAPLTRYRADDAH-VHTDLGFEYYRQRGSVPGTLLITEATFISAQAGGAPNVPGIWNDAQIAAWKKITDAVHAKGSYIYC 104
                   9*************************9999.999*************************************************************** PP

                   EEE--GGGS..SCSTCEC......SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHH.TT-SEEEEEE-CTSHHHHHH-TTT--- CS
  Oxidored_FMN  99 qlwhlGreakseyladqe....vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraie.AgfDgVeihganGYLlnqFlspksnkr 190
                   qlw lGr+a    l++++    ++s+s p+ l+a      ++v ++eltk+eik++iq ++ AA +a++ AgfDgVe+hganGYL++qFl+  snkr
    CDO72487.1 105 QLWSLGRAARPAALKQENpafpYVSAS-PIPLKAT----PNDV-PRELTKDEIKEYIQWHATAAVNAVHkAGFDGVEVHGANGYLIDQFLQDVSNKR 195
                   *********988888888677777777.6666666....5566.89**********************99*************************** PP

                   -STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTTHHHHHH CS
  Oxidored_FMN 191 tDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqekntefv 287
                   tDeygGs+enRarF+lev+daV+ a+g+ + ++RlSp +v++++        + +l+++ ++r +   +la++h+++p    +g++      +++f+
    CDO72487.1 196 TDEYGGSIENRARFALEVMDAVVAAIGQSKAAIRLSPWSVYQDMRMDDPKPTFTYLVEQFKQRYP---HLAYLHVVTPN--APGNQGPADPADADFI 287
                   *****************************************9997665558999**********9...*********65..55555555448***** PP

                   CCCHS.SEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 288 kevwk.kplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   +e+w   p+i +g++++e+   +  ae+  +++++gR+fla+pdl+++l+k++pln
    CDO72487.1 288 YEHWApRPVISTGGYDRES--GIKTAEQTGQIIGYGRPFLANPDLPFRLEKNIPLN 341
                   ***9758************..99******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2650.61
//
Query:       CDO72488.1  [L=865]
Description: Glycoside Hydrolase Family 55 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-85  284.7  24.7    1.4e-73  247.3  11.8    3.0  3  Pectate_lyase_3  Pectate lyase superfamily protein
    1.3e-05   24.8   4.2     0.0038   16.9   0.6    2.6  2  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.3  11.8   1.6e-77   1.4e-73       1     215 []      69     309 ..      69     309 .. 0.95
   2 ?   -3.3   0.3      0.74   6.7e+03     179     201 ..     354     375 ..     331     390 .. 0.69
   3 !   46.2   0.6   5.4e-16   4.8e-12       1      72 [.     438     501 ..     438     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 247.3 bits;  conditional E-value: 1.6e-77
                      SEEGGGGT---EEEEE-HHHHHHHH..............HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TT CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkais........casatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyv 86 
                      frnVkd+GakgDGvtDdtaai++ais        c ++t ++avVYfP+GtYlvsspii+++++qL+Gd++ +p+l a+++f+g ++id+dp  
       CDO72488.1  69 FRNVKDFGAKGDGVTDDTAAINAAISsgnrcgngCGQSTISPAVVYFPQGTYLVSSPIISYYYTQLIGDAKHMPTLVASPNFQGIAVIDADP-- 160
                      8******************************************************************************************9.. PP

                      T-..-EEEEEEEEEEEGGGG-SS---S..SEEEES-EEEEEEEEEEES-SSEEE-SSS---TT---SS--EEEEES-EEES-SS-SEEES.... CS
  Pectate_lyase_3  87 sggsealiatnnfyrqirnlkiditav..apgatgihwqtaqatslenvefemseasgtkhqgifiengsggflndlvfsglgdigiavg.... 174
                           +++++ nfy++irn+kid++++  + +atgihwq++qatsl n++f+ms+a+g+ hqgi +engsggf+ dlvf+g g++g+ vg    
       CDO72488.1 161 ----GWYVNQDNFYHSIRNFKIDVSRMptSASATGIHWQVSQATSLINIVFQMSTAAGNAHQGIWMENGSGGFMGDLVFNG-GKFGMWVGnqqy 249
                      ....49*********************655555************************************************.*******88*** PP

                      ..............-EEEEEES-EEE-S--SEE.....E-TT-EEEEEEEEEESSSEEEE CS
  Pectate_lyase_3 175 ..............nqqftvrnitfnnattgie.....vlwgwgwtlknvkinncegGid 215
                                     + ftvrnit+nna+t+++      lw+wgwt+++v+innc++G+d
       CDO72488.1 250 veissrheitlmgtGHRFTVRNITVNNANTAVSdrpvyGLWNWGWTFQGVTINNCQVGFD 309
                      ***************************9999752222268******************85 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.74
                      EEES-EEE-S--SEEE-TT-EEE CS
  Pectate_lyase_3 179 tvrnitfnnattgievlwgwgwt 201
                      +++ni+ nn  t++ v  g   +
       CDO72488.1 354 VLNNIKLNNVPTAVGVANGQV-V 375
                      568888888888888875433.3 PP

  == domain 3  score: 46.2 bits;  conditional E-value: 5.4e-16
                      SEEGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-T CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaa 72 
                      f++Vk+ GakgDG+tDdtaaiq+         + ++++f aG Y+vs++i ++ g+q+vG++ + ++l   +
       CDO72488.1 438 FISVKSQGAKGDGQTDDTAAIQAYS-------GCKIIFFDAGVYVVSNTITIPAGTQIVGEA-WSTILGTGN 501
                      79********************887.......99***************************9.444443332 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   4.3e-07    0.0038       1      30 [.      77     104 ..      77     109 .. 0.83
   2 !    8.5   0.2   0.00018       1.6       1      15 [.     446     460 ..     446     465 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-07
                     ---EEEEE-HHHHHHHHHHS-TTS-EE-TT CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaapvgkkidGrG 30 
                     akGDGvtdDt+a+++++++  +++  +G G
      CDO72488.1  77 AKGDGVTDDTAAINAAISS--GNRCGNGCG 104
                     89***************99..555556665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00018
                     ---EEEEE-HHHHHH CS
  End_N_terminal   1 akGDGvtdDtdalse 15 
                     akGDG tdDt+a+++
      CDO72488.1 446 AKGDGQTDDTAAIQA 460
                     89**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5905.86
//
Query:       CDO72489.1  [L=594]
Description: hypothetical protein BN946_scf184980.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-19   68.7   0.0    6.9e-19   67.8   0.0    1.5  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    1.2e-11   44.8   0.0    3.2e-11   43.4   0.0    1.8  1  Ribosomal_L5    Ribosomal protein L5


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   7.7e-23   6.9e-19       1      88 [.     484     564 ..     484     582 .. 0.84

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 7.7e-23
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttaktdeearallk 88 
                     +i+v+vt+rg+k++e+l++ l+v++++l       +++f+++Gn++fGi+e+i++ + +yd+ +gifGmd+++v+ ++ ++ ar+  k
      CDO72489.1 484 KIAVHVTIRGPKAEEILERGLKVKEYELV------RKNFSETGNFGFGIDEHIDL-GARYDPTIGIFGMDFYVVMGRPGARVARRKQK 564
                     69***************************......********************.**********************5553332222 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.5e-15   3.2e-11      15      57 .]     441     480 ..     440     480 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.5e-15
                   EE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  15 mgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57 
                   + vGe+g++   l++a k+L+++tGQ+Pv +ka++++++F+iR
    CDO72489.1 441 ISVGESGDR---LTRASKVLEQLTGQTPVTSKARYTVRQFGIR 480
                   579******...******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4043.67
//
Query:       CDO72490.1  [L=422]
Description: hypothetical protein BN946_scf184980.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-09   35.9   0.0    1.5e-08   34.9   0.0    1.5  1  Josephin  Josephin
  ------ inclusion threshold ------
       0.04   13.8   3.0       0.04   13.8   3.0    4.9  5  UIM       Ubiquitin interaction motif
        1.8    7.0  12.2        2.9    6.3  12.2    1.3  1  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> Josephin  Josephin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.5e-12   1.5e-08     125     162 ..      51      88 ..      30      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.5e-12
    Josephin 125 gaWynldSklkepekiektelsefLrqvksegysvfvv 162
                 g+W+nl+S l++pe i k +l +fL+q+++egysvf+v
  CDO72490.1  51 GHWFNLNSFLNRPERIGKLYLGMFLQQAEAEGYSVFAV 88 
                 89**********************************88 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4   0.00045       2.7       1      15 [.     144     158 ..     144     159 .. 0.90
   2 ?   -7.8   4.6         3   1.8e+04       2       5 ..     211     214 ..     210     215 .. 0.45
   3 ?    6.9   1.5    0.0011       6.7       1      13 [.     284     296 ..     284     298 .. 0.93
   4 ?   13.8   3.0   6.8e-06      0.04       1      16 [.     331     346 ..     331     346 .. 0.95
   5 ?   -1.0   1.2      0.36   2.1e+03      11      16 ..     406     411 ..     406     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00045
         UIM   1 dEdedLqrAlalSlq 15 
                 dEd +Lq+Al+ Sl+
  CDO72490.1 144 DEDFELQAALQASLS 158
                 78999********96 PP

  == domain 2  score: -7.8 bits;  conditional E-value: 3
         UIM   2 Eded 5  
                 +d+d
  CDO72490.1 211 DDDD 214
                 4443 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0011
         UIM   1 dEdedLqrAlalS 13 
                 dEde ++rAla S
  CDO72490.1 284 DEDELFRRALAES 296
                 8**********87 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 6.8e-06
         UIM   1 dEdedLqrAlalSlqE 16 
                 dEd++Lq+Al+ Sl++
  CDO72490.1 331 DEDQELQAALRASLET 346
                 8*************95 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.36
         UIM  11 alSlqE 16 
                 +lS++E
  CDO72490.1 406 QLSMEE 411
                 79***9 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  12.2   0.00048       2.9     256     343 ..     241     327 ..     225     351 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00048
        FUSC 256 laallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaarraerlarhrdh 343
                  +a+++++a++++ a+++++++++a ++a +r+ +ra+++ +d +++l++r++ + ++laq +a+ +  ea+ a+ ++++++a+h ++
  CDO72490.1 241 QRAVMERMARMQEVALQQQYQEEVAGFDAMARRRQRAPPEGQDDEDELFRRALAESEALAQQHAARQVEEAESAS-AAPPPPAWHQHR 327
                 4566666666677999*********************************************88888888888777.888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2881.09
//
Query:       CDO72491.1  [L=295]
Description: hypothetical protein BN946_scf184980.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-65  222.0   0.0    1.5e-65  221.7   0.0    1.0  1  ATG27          Autophagy-related protein 27
    0.00085   18.5   0.0     0.0014   17.8   0.0    1.2  1  Man-6-P_recep  Mannose-6-phosphate receptor


Domain annotation for each model (and alignments):
>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.7   0.0   1.6e-69   1.5e-65       3     264 .]      17     291 ..      14     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 221.7 bits;  conditional E-value: 1.6e-69
       ATG27   3 lllallaaasaa..ldCskivvdkglkkydlsklkgphsvstseetppsktnttytldiCeplkkkkdvkkedqCpkgtrvCgitrvikkdekdeitqv 99 
                 l++al++a++ +  +dC+ i+vd +l+ ydl++l+g+hsvs++ + ppsk ++++t+++C++l++k+dv+ edqCp+gtr+C ++++ k+ ++d++ +v
  CDO72491.1  17 LVTALASAQEDTkpFDCR-ITVD-DLQ-YDLESLAGEHSVSRELSVPPSKIEDKVTFNLCADLERKSDVPTEDQCPEGTRACLVRTNRKEGHSDRVFSV 112
                 33333333333359****.9999.999.**************************************************************999****** PP

       ATG27 100 ipi.ggksldpkvtrlkesdekeglrlelkggky......gkkkqkaiieflC..dekslkfksydeeeeeekdvlrlewktkyACekaekdkkdsskk 189
                 ip+ ++++ +++ trl++  + +g++l++ g+ y         +q + +e+lC  + +++ f+syd+++      l+lew+ +++C  +  +++ds+k 
  CDO72491.1 113 IPLaNSSASAVTPTRLSS--P-KGIELTFAGSPYpsvvnaDPIPQYFHLELLCstEISNINFTSYDGKD------LNLEWSAPAGCGFSGPSDDDSEKP 202
                 ***666666777777754..5.79***************999***********5556677*******99......***********9776655555544 PP

       ATG27 190 kek.................sgwGfFtwlfiilflataaYlifgswlNynryGargwDllphgdtirdlPyllkDvvrkvlgtvqgs.gsrgG 264
                 + k                 sg+G   ++f+++fla++aY+++g+++Ny++yGa+g+Dl+ph+d++r++Py+l+Dvv+++++ ++ + +srgG
  CDO72491.1 203 D-KgddgdsgsggdkhesvgSGLG---YFFLLFFLAFVAYFALGAYYNYTTYGATGADLIPHRDFWREVPYMLRDVVSHLCSAIRPRqASRGG 291
                 4.35899*********98777777...69*********************************************************999**98 PP

>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-07    0.0014     165     228 ..     224     287 ..     212     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-07
  Man-6-P_recep 165 vGsillivllslvavyligGflyqrlvvgakGleqiPnyafWqdlGnlvadGCdfvCrsk.sree 228
                    +G  +l+ +l+ va y+  G  y+    ga G + iP+  fW+++  ++ d    +C +  +r++
     CDO72491.1 224 LGYFFLLFFLAFVA-YFALGAYYNYTTYGATGADLIPHRDFWREVPYMLRDVVSHLCSAIrPRQA 287
                    34456666666665.8899999*******************************999986436665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2010.17
//
Query:       CDO72492.1  [L=455]
Description: hypothetical protein BN946_scf184980.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 2983.88
//
Query:       CDO72493.1  [L=299]
Description: hypothetical protein BN946_scf184980.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-50  169.9   0.1    6.7e-50  169.7   0.1    1.1  1  AIM24     Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.1   3.7e-54   6.7e-50       1     201 []      77     275 ..      77     275 .. 0.96

  Alignments for each domain:
  == domain 1  score: 169.7 bits;  conditional E-value: 3.7e-54
                 EEEESS.SS-EEEEEE-TT-EEEE-CCGEEEEETTEEEEE--------------EEEEEEES.SS-EEEEE--SSSEEEEEEEGGTT.EEEEEGGGEEE CS
       AIM24   1 fevlge.pssllsvtLspgeelyaerGalvamsgkvemetgllkalkrlltgeslfllkftakissgtvllapklpgtivtlelgggdwlivqkdafLA 98 
                 f++ ++ + ++l + L+pg e+ a++G++vam+ +v+++++++ ++k+++tg  ++ ++ft+   +g+vl+ap   g++v+++l+g++++ v++dafLA
  CDO72493.1  77 FRIDHRdSNTMLYLRLQPGYEVKAKPGSMVAMDASVSIRGKFKFSMKKMFTGGDMSESTFTG---PGEVLIAPEIWGDVVPIHLDGQTQWRVGRDAFLA 172
                 677777799****************************************************5...5******************9999*********** PP

                 EETT-EEEEEEEE--.SSGGGTS-EEEEEEESSSEEEEEEECSEEEEEEE.EEEEEEEGGGEEEEETTEEEEEEEETT---STTTTS-EEEEEEEEEEE CS
       AIM24  99 atgnveldikfqkgl.kglfggeglflqkltGrGlvalsgyGaiyeielkageelvvdpghlvafsgslkfdiervgglkrrligGeglflkltGpgtv 196
                 +t +v+ ++k+q gl k+lf+geglf++ + G G +++++ Gai++ +l++ge+ +vd+ghlva+++  k++  ++gg+++   + egl++++tGpg v
  CDO72493.1 173 CTMGVSRQTKSQ-GLgKALFSGEGLFVYNVMGAGILWVTSLGAIFSRTLQPGEQWIVDNGHLVAWTAEYKVERINAGGFLSGAHTDEGLVCRFTGPGIV 270
                 ************.6789*************************************************9999998899*********************** PP

                 EEESS CS
       AIM24 197 llqsr 201
                 ++q+r
  CDO72493.1 271 YIQTR 275
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2108.35
//
Query:       CDO72494.1  [L=188]
Description: hypothetical protein BN946_scf184980.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.067   13.4   0.1       0.12   12.6   0.1    1.4  1  stn_TNFRSF12A    Tumour necrosis factor receptor stn_TNFRSF12
       0.13   12.0   0.7       0.19   11.5   0.7    1.3  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.4e-05      0.12      73     107 ..      26      61 ..       5      69 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
  stn_TNFRSF12A  73 asfrllwpilGGalslalv.lgllsGflvwrrcrrr 107
                       r l pil Ga+s  +v ++ + G++vw   r r
     CDO72494.1  26 HGHRALTPILSGAISGGIVgVAWIIGIIVWLYKRHR 61 
                    457899*********99987999*******544433 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   2.2e-05      0.19       5      67 ..      11      71 ..       8      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
  Phage_holin_2_4  5 tiealaaagnkatggGavvsfaGflasselialvGlavAliGlLvnWyYkreanRRaaaehel 67
                     +i+a++   ++ +   +  ++   l+ +   ++vG+a  +iG++v W Ykr    R a+ +  
       CDO72494.1 11 AIDAMTPQESREAALHGHRALTPILSGAISGGIVGVAW-IIGIIV-WLYKRHRRARRAKAAGY 71
                     57777777777777777777777788888889999874.889766.99999877666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1162.12
//
Query:       CDO72495.1  [L=586]
Description: hypothetical protein BN946_scf184980.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-203  676.2   0.0   3.6e-203  675.9   0.0    1.1  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  675.9   0.0    2e-207  3.6e-203       1     517 []      57     583 ..      57     583 .. 0.97

  Alignments for each domain:
  == domain 1  score: 675.9 bits;  conditional E-value: 2e-207
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kp+igi  +++e +pc+ hl +la++vkeg++++g v++ f+tigvsDgi+mg++gmrysLpsR+liads+et++ aq++D+++ i+gCDK++Pg+++a
  CDO72495.1  57 KPQIGISPVWWEGNPCNNHLLDLARKVKEGCTQEGLVGLTFSTIGVSDGITMGTDGMRYSLPSRDLIADSIETVVMAQHYDGNISIPGCDKNMPGCVIA 155
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmea..........gkkk....kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsas 184
                 a+r+n+P+++v+gG++++          g  +    ++++ ++fe++ga+a gki+ee+  ++ +++cpg+G+C+gm+TAntm++++e+lGlslp+sas
  CDO72495.1 156 ACRHNRPTVIVYGGTIQPgvrqvdcpslG--HkkgdNMNIADAFESYGAFAVGKITEEQRLDVVRHSCPGPGACGGMFTANTMSSVLEVLGLSLPYSAS 252
                 ******************66666655553..0447799************************************************************* PP

    ILVD_EDD 185 ipatsaerkelaeeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedlh 283
                 ipat+ae+++++ +a+k + +l+e dlkp+dilt+++f NAi+++ ++GGStNavlHllA+Ar+a+v+lt+ddf+++++++p+la+lkPsgky medlh
  CDO72495.1 253 IPATYAEKAQECVKAAKYLKRLLELDLKPKDILTRNSFLNAITIVNVIGGSTNAVLHLLAMARAADVDLTIDDFQKVADRTPYLADLKPSGKYVMEDLH 351
                 *************************************************************************************************** PP

    ILVD_EDD 284 raGGvpavlkeLlka.gllhgdvltvtgktlaenlee...aevkeqdvirplekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdsee 378
                 ++GG+pa+lk+Ll++ +l++g  +tvtgktlaenle+    ++++qdv+rpl++p++++g+l +L+GnLap+ av+K++++e   l+feg A++fds  
  CDO72495.1 352 KVGGIPALLKYLLNHtDLIDGTQMTVTGKTLAENLEDvpeLQFADQDVVRPLSNPIKATGHLMILRGNLAPDTAVAKITGKE--GLRFEGIAKCFDSIP 448
                 *************999*******************99654455**************************************9..9************** PP

    ILVD_EDD 379 eaveailkgkikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlel 477
                  +++a++kg+i+ag+ ++ ry+GPkGgpGmpE    t+al+g+glg k alitDGRfSGas+g++ighv+PEA +gGpialvedGD i id+ekr++++
  CDO72495.1 449 PFFTALEKGEITAGMAIIFRYQGPKGGPGMPE----TAALMGAGLGGKTALITDGRFSGASRGFIIGHVVPEAFVGGPIALVEDGDKIIIDAEKRSIDW 543
                 *******************************9....6899*********************************************************** PP

    ILVD_EDD 478 evseeelaaRraawkpekkvktrgllakyaklvssaseGA 517
                 +v+eee ++Rr++w +++  ++rg+l +ya+ v  a+ GA
  CDO72495.1 544 LVDEEEQKRRRERWVQREYREKRGVLYRYARDVAPANVGA 583
                 ***************9555566***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4011.90
//
Query:       CDO72496.1  [L=617]
Description: hypothetical protein BN946_scf184980.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-19   67.6   0.0    2.1e-05   24.1   0.1    3.9  3  TPR_1       Tetratricopeptide repeat
    3.7e-17   61.0   1.9    0.00012   21.9   0.1    5.1  5  TPR_2       Tetratricopeptide repeat
    2.9e-12   45.8   0.2      0.011   15.9   0.0    4.7  4  TPR_8       Tetratricopeptide repeat
    8.3e-12   45.6   0.8    2.2e-06   28.2   0.1    3.8  3  TPR_16      Tetratricopeptide repeat
    1.2e-09   38.1   9.7      0.012   16.3   0.0    5.8  5  TPR_14      Tetratricopeptide repeat
    4.1e-09   36.6   7.2     0.0037   17.5   0.1    4.7  5  TPR_12      Tetratricopeptide repeat
    1.7e-08   33.9   0.0        0.4   10.8   0.0    3.9  3  TPR_7       Tetratricopeptide repeat
    2.4e-08   33.5   2.2    0.00065   19.3   0.1    4.0  4  TPR_11      TPR repeat
    2.8e-07   30.4   0.2      0.016   15.5   0.0    4.4  4  TPR_17      Tetratricopeptide repeat
    1.9e-06   28.3   4.8      0.016   15.7   0.0    3.9  3  TPR_19      Tetratricopeptide repeat
    4.7e-05   22.7   2.5      0.023   13.9   0.1    2.5  2  TPR_15      Tetratricopeptide repeat
    0.00097   18.9   2.7        2.3    8.2   0.1    4.2  4  TPR_10      Tetratricopeptide repeat
     0.0013   19.2   2.4        5.5    7.9   0.0    4.8  3  TPR_6       Tetratricopeptide repeat
     0.0087   16.3   0.3      0.025   14.8   0.0    2.0  1  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
       0.01   15.3   0.0       0.09   12.2   0.0    2.4  3  Coatomer_E  Coatomer epsilon subunit
      0.013   15.6   2.0        1.3    9.2   0.2    3.2  3  TPR_9       Tetratricopeptide repeat
      0.024   15.0   0.2        1.5    9.2   0.0    3.3  3  TPR_20      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.8e-08   5.1e-05       3      34 .]     474     505 ..     472     505 .. 0.92
   2 !   24.1   0.1     2e-08   2.1e-05       3      34 .]     508     539 ..     506     539 .. 0.96
   3 !   16.0   0.0   7.1e-06    0.0075       2      32 ..     541     571 ..     540     573 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.8e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 +  +lG++++   +yd A +++e AL+++Pn+
  CDO72496.1 474 VQIGLGVLFYTSSDYDRAKDCFEAALSIRPND 505
                 5678**************************97 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 2e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  +++lG  + + +k++eAl +y++AL+l+P++
  CDO72496.1 508 LWNRLGSSLSNGNKPEEALGAYREALQLRPTY 539
                 6*****************************97 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 +a yn G+a+++ g ++eA+e++  AL  ++
  CDO72496.1 541 RAIYNVGVACLNIGAHKEAIEHFLSALAMQE 571
                 578***********************98765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.59   6.2e+02      10      29 ..     333     352 ..     332     354 .. 0.89
   2 ?   -1.4   0.0       3.2   3.4e+03       2      26 ..     362     386 ..     361     392 .. 0.79
   3 !   20.3   0.0   3.7e-07   0.00039       3      34 .]     474     505 ..     472     505 .. 0.92
   4 !   21.9   0.1   1.1e-07   0.00012       3      34 .]     508     539 ..     506     539 .. 0.95
   5 !   12.5   0.0   0.00012      0.12       3      31 ..     542     570 ..     540     573 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.59
       TPR_2  10 ayyklgdyeeAleafekAle 29 
                 +++++g + eA+ ++e+A++
  CDO72496.1 333 LLARNGSLSEAALLLEAAIQ 352
                 5789999***********98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.2
       TPR_2   2 ealynlGlayyklgdyeeAleafek 26 
                 ea+  lG+      + + A +a+ +
  CDO72496.1 362 EAWILLGETRSMDERDDAAMRALME 386
                 8999***999888888888887766 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 3.7e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 +   lG + y + dy++A+++fe+Al++ Pn+
  CDO72496.1 474 VQIGLGVLFYTSSDYDRAKDCFEAALSIRPND 505
                 66789*************************97 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 1.1e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++++lG ++ + +++eeAl a+++Al+l P++
  CDO72496.1 508 LWNRLGSSLSNGNKPEEALGAYREALQLRPTY 539
                 7*****************************85 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 0.00012
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 a yn G a+++ g ++eA+e+f  Al+  
  CDO72496.1 542 AIYNVGVACLNIGAHKEAIEHFLSALAMQ 570
                 789**********************9875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.65   6.8e+02       2      31 ..     362     391 ..     361     393 .. 0.85
   2 !   15.9   0.0     1e-05     0.011       6      34 .]     477     505 ..     472     505 .. 0.88
   3 !   13.2   0.0   7.8e-05     0.082       3      33 ..     508     538 ..     506     539 .. 0.95
   4 !    9.8   0.0   0.00092      0.97       2      32 ..     541     571 ..     540     573 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.65
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 ea+ +lg + +  ++ ++A+ ++++ ++ +
  CDO72496.1 362 EAWILLGETRSMDERDDAAMRALMEGVKRA 391
                 899999999999999999999999998876 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpdn 34 
                  lg +  +  dy+ Ak ++e al+++p++
  CDO72496.1 477 GLGVLFYTSSDYDRAKDCFEAALSIRPND 505
                 5788888999*****************96 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++++lgs +++ ++ eeA  +y++al+l+p+
  CDO72496.1 508 LWNRLGSSLSNGNKPEEALGAYREALQLRPT 538
                 69***************************97 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00092
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 +a yn g ++l+ g ++eA+e +  al +++
  CDO72496.1 541 RAIYNVGVACLNIGAHKEAIEHFLSALAMQE 571
                 789***********************99876 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   3.7    0.0034       3.6       6      61 ..     333     389 ..     331     397 .. 0.89
   2 !   28.2   0.1   2.1e-09   2.2e-06       3      66 ..     478     538 ..     476     540 .. 0.94
   3 !   24.4   0.1   3.3e-08   3.4e-05       3      63 ..     512     569 ..     510     576 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0034
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraal 61 
                 +++r+g   +Aa +leaa+  +      +eA+ llg+ +    r ++A  al +   
  CDO72496.1 333 LLARNGSLSEAALLLEAAIQHGDLGEGGYEAWILLGETRSMDERDDAAMrALMEGVK 389
                 78999*****************99999*********************988887654 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.1e-09
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 l+ +++ + dyd+A   +eaal  +   P ++  ++ lg ++   +  +eA+ +yr+al+  p 
  CDO72496.1 478 LGVLFYTSSDYDRAKDCFEAALSIR---PNDYLLWNRLGSSLSNGNKPEEALGAYREALQLRPT 538
                 6778999******************...99999**************************99886 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 3.3e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 l+ ++ + +++++A+ a+++al ++   P   +A ++ g+a+l  g ++eA++ +++al+ 
  CDO72496.1 512 LGSSLSNGNKPEEALGAYREALQLR---PTYTRAIYNVGVACLNIGAHKEAIEHFLSALAM 569
                 5677778899***************...*****************************9854 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   1.0    0.0039       4.1       3      43 ..     326     369 ..     325     370 .. 0.78
   2 ?    1.4   0.3      0.74   7.8e+02       2      33 ..     362     393 ..     361     402 .. 0.85
   3 !   16.3   0.0   1.2e-05     0.012       6      42 ..     477     513 ..     472     515 .. 0.89
   4 !   14.8   0.1   3.7e-05     0.039       4      37 ..     509     542 ..     508     549 .. 0.90
   5 ?    3.0   0.0      0.22   2.3e+02       9      32 ..     548     571 ..     541     590 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0039
      TPR_14   3 allalaeallalGdpdeAiallrralala...Pddaeawlllaq 43 
                 al+++ ++l+++G + eA+ ll++a++++    +  eaw+ll++
  CDO72496.1 326 ALQDAKDLLARNGSLSEAALLLEAAIQHGdlgEGGYEAWILLGE 369
                 67788899*******************64111444688888876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.74
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPd 33 
                 ea+ +l+e     ++ d+A+++l + +++a +
  CDO72496.1 362 EAWILLGETRSMDERDDAAMRALMEGVKRAEA 393
                 789999999999999*******9998887765 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.2e-05
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawllla 42 
                  l+ +++++ d+d+A +++++al+  P+d  +w +l+
  CDO72496.1 477 GLGVLFYTSSDYDRAKDCFEAALSIRPNDYLLWNRLG 513
                 5778899999***********************9997 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 3.7e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaea 37 
                 + +l++ l +  +p+eA+ ++r+al+l P+  +a
  CDO72496.1 509 WNRLGSSLSNGNKPEEALGAYREALQLRPTYTRA 542
                 78999************************99877 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.22
      TPR_14   9 eallalGdpdeAiallrralalaP 32 
                  a+l+ G ++eAi+++  ala + 
  CDO72496.1 548 VACLNIGAHKEAIEHFLSALAMQE 571
                 5788899************99655 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.47     5e+02      35      73 ..     316     352 ..     310     355 .. 0.84
   2 ?   -0.2   1.1       1.1   1.2e+03      25      76 ..     346     392 ..     332     393 .. 0.60
   3 !   10.8   0.0   0.00045      0.48      48      76 ..     475     503 ..     461     504 .. 0.91
   4 !   16.8   0.0   5.8e-06    0.0061       7      75 ..     476     536 ..     473     538 .. 0.90
   5 !   17.5   0.1   3.5e-06    0.0037       3      49 ..     541     586 ..     539     599 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.47
      TPR_12  35 rllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ++l+p h    ++l++  +l+ + g + eA  lle a++
  CDO72496.1 316 KYLDPSH--SKSALQDAKDLLARNGSLSEAALLLEAAIQ 352
                 5666777..7789999999***************99986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 lle+a++       +  ++  ++ + Lg++ ++ +r ++A ++l e +++ae
  CDO72496.1 346 LLEAAIQHG-----DLGEGGYEAWILLGETRSMDERDDAAMRALMEGVKRAE 392
                 444443333.....33333445677888888888888888888888777766 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00045
      TPR_12  48 lrnLgrlyralgryeeAlelleealaiae 76 
                 +++Lg l++ + +y+ A + +e al i++
  CDO72496.1 475 QIGLGVLFYTSSDYDRAKDCFEAALSIRP 503
                 6799*********************9986 PP

  == domain 4  score: 16.8 bits;  conditional E-value: 5.8e-06
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                   l+++ +   +yd A +++e+al i+     p+ +l     + Lg  ++  +++eeAl +++eal+++
  CDO72496.1 476 IGLGVLFYTSSDYDRAKDCFEAALSIR-----PNDYL---LWNRLGSSLSNGNKPEEALGAYREALQLR 536
                 5799999999*****************.....77766...599******999**************997 PP

  == domain 5  score: 17.5 bits;  conditional E-value: 3.5e-06
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlr 49 
                  +++ n++++++  g + eA+e++  al++++++ G +++++ ttlr
  CDO72496.1 541 RAIY-NVGVACLNIGAHKEAIEHFLSALAMQESSGGAKSEQLWTTLR 586
                 5666.*****************************9999977666654 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0011       1.1       5      30 ..     478     503 ..     477     506 .. 0.83
   2 !    8.7   0.0    0.0018       1.9       2      29 ..     509     536 ..     508     540 .. 0.91
   3 !   10.8   0.0   0.00038       0.4       1      34 [.     542     575 ..     542     577 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltk 30 
                 L++l+    dy++A +++e++L ++ 
  CDO72496.1 478 LGVLFYTSSDYDRAKDCFEAALSIRP 503
                 88998899************777664 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 +++L++  s+ ++ eeA++ y+++L+l+
  CDO72496.1 509 WNRLGSSLSNGNKPEEALGAYREALQLR 536
                 799********************99886 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00038
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 a++n ++++ + G ++eAie++  +La+ ++ ++
  CDO72496.1 542 AIYNVGVACLNIGAHKEAIEHFLSALAMQESSGG 575
                 67899*******************9998777665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.3   2.4e+03       4      22 ..     334     352 ..     332     352 .. 0.82
   2 !    9.9   0.0   0.00053      0.56       3      36 ..     481     514 ..     479     519 .. 0.90
   3 !   19.3   0.1   6.2e-07   0.00065       9      40 ..     521     552 ..     518     554 .. 0.89
   4 ?    1.5   0.0      0.23   2.5e+02       8      23 ..     554     569 ..     551     573 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
      TPR_11   4 yyeqGkyeeAieaYkkAlk 22 
                 +   G + eA   +++A++
  CDO72496.1 334 LARNGSLSEAALLLEAAIQ 352
                 6678999999999999996 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGl 36 
                 ++y   +y+ A  ++++Al ++P++  +++ LG 
  CDO72496.1 481 LFYTSSDYDRAKDCFEAALSIRPNDYLLWNRLGS 514
                 5788889*************************96 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 6.2e-07
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 k eeA+ aY++Al+l+P++ +a yn G+a ++
  CDO72496.1 521 KPEEALGAYREALQLRPTYTRAIYNVGVACLN 552
                 569************************99765 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.23
      TPR_11   8 GkyeeAieaYkkAlkl 23 
                 G  +eAie++  Al+ 
  CDO72496.1 554 GAHKEAIEHFLSALAM 569
                 7789*********986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.5   2.7e+03      14      32 ..     362     380 ..     360     384 .. 0.78
   2 ?   -0.4   0.0       1.9     2e+03      13      33 ..     472     492 ..     471     493 .. 0.83
   3 !   15.5   0.0   1.6e-05     0.016       1      33 [.     494     526 ..     494     527 .. 0.96
   4 !    8.5   0.0    0.0027       2.8       1      34 []     528     561 ..     528     561 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.5
      TPR_17  14 daynnLAelllknGdlmtA 32 
                 +a+ +L+e+ ++  + + A
  CDO72496.1 362 EAWILLGETRSMDERDDAA 380
                 79******99977665554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.9
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 +d+   L++l++   d+++A+
  CDO72496.1 472 PDVQIGLGVLFYTSSDYDRAK 492
                 5666679************97 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.6e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +++ al + Pn+  ++n L+  l++ +++++A+
  CDO72496.1 494 CFEAALSIRPNDYLLWNRLGSSLSNGNKPEEAL 526
                 89**************************99995 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0027
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +y++al+l P++  a +n +++ l++G +++A++
  CDO72496.1 528 AYREALQLRPTYTRAIYNVGVACLNIGAHKEAIE 561
                 59*************************9999985 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.1      0.63   6.6e+02       3      34 ..     336     370 ..     324     391 .. 0.64
   2 !   10.1   0.0   0.00084      0.89      12      58 ..     459     505 ..     449     512 .. 0.74
   3 !   15.7   0.0   1.5e-05     0.016       6      48 ..     521     563 ..     516     578 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.63
      TPR_19   3 aegdyaeAlalleqalqe...dpknaearllLAea 34 
                  +g + eA+ lle+a+q+     +  ea++lL e 
  CDO72496.1 336 RNGSLSEAALLLEAAIQHgdlGEGGYEAWILLGET 370
                 56777788888888876655433355555556655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00084
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 +  ++ ++    +++++++L  + + + ++d A+++ +a++   p+d
  CDO72496.1 459 KVAREQYSRGQIDPDVQIGLGVLFYTSSDYDRAKDCFEAALSIRPND 505
                 33444334444499999*******************99999999995 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.5e-05
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48 
                 +++eAl ++++alq  p + +a ++   a+l+ g  +eA++  
  CDO72496.1 521 KPEEALGAYREALQLRPTYTRAIYNVGVACLNIGAHKEAIEHF 563
                 789************************************9865 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3     0.001       1.1     107     192 ..     321     407 ..     316     444 .. 0.83
   2 !   13.9   0.1   2.2e-05     0.023     124     233 ..     486     598 ..     449     601 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
      TPR_15 107 frsprlLssalellerakdydriaellksleeeeaae.qsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliD 192
                 ++s   L+ a +ll r + +++ a ll+ + +  ++  +    +++++e  +   + daA+r++ e++++a +  ++ a++l l i 
  CDO72496.1 321 SHSKSALQDAKDLLARNGSLSEAALLLEAAIQHGDLGeGGYEAWILLGETRSMDERDDAAMRALMEGVKRAEAAGAAGAGMLSLAIT 407
                 688999***********************99999965388899****************************9998888888876664 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.2e-05
      TPR_15 124 kdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrrae.Lrellkawkara....esdasLw 217
                  dydr ++ ++   +++   ++ + + +++++ ++ +++++Al +yreAl+l p+ + ++ +   + ++ g  +e + + l+a+  ++    +++++Lw
  CDO72496.1 486 SDYDRAKDCFEA--ALSIRPNDYLLWNRLGSSLSNGNKPEEALGAYREALQLRPTYTRAIYNVGVACLNIGAHKEaIEHFLSALAMQEssggAKSEQLW 582
                 566666666666..33333467889999********************************999999999999998778888888888899999****** PP

      TPR_15 218 gplaaAlllLgrpkkA 233
                   l  A +++ rp+ A
  CDO72496.1 583 TTLRRAFQTMDRPDLA 598
                 *********9999876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.8   1.9e+03      12      30 ..     334     352 ..     333     352 .. 0.85
   2 ?    3.1   0.0     0.091        96       8      32 ..     478     502 ..     474     502 .. 0.90
   3 !    8.2   0.1    0.0022       2.3       6      32 ..     510     536 ..     510     536 .. 0.94
   4 ?    4.3   0.0     0.038        40       5      34 ..     543     572 ..     541     578 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
      TPR_10  12 lrqrgrydeAealleeala 30 
                 l + g + eA  lle a++
  CDO72496.1 334 LARNGSLSEAALLLEAAIQ 352
                 56788899********996 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.091
      TPR_10   8 LanalrqrgrydeAealleealair 32 
                 L+++ +   +yd+A + +e al+ir
  CDO72496.1 478 LGVLFYTSSDYDRAKDCFEAALSIR 502
                 788889999*************997 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0022
      TPR_10   6 nNLanalrqrgrydeAealleealair 32 
                 n L+  l++ ++ +eA+  ++eal++r
  CDO72496.1 510 NRLGSSLSNGNKPEEALGAYREALQLR 536
                 789*********************986 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.038
      TPR_10   5 lnNLanalrqrgrydeAealleealairrr 34 
                   N ++a  + g ++eA +++  ala+++ 
  CDO72496.1 543 IYNVGVACLNIGAHKEAIEHFLSALAMQES 572
                 56899999999****************986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0052       5.5       5      32 ..     477     504 ..     455     505 .. 0.83
   2 ?    6.7   0.0     0.012        13       5      32 ..     511     538 ..     511     539 .. 0.91
   3 ?    0.2   0.0       1.4   1.5e+03       2      23 ..     542     563 ..     541     568 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                  l+ +++   d+d+A++ +e  ++  P+
  CDO72496.1 477 GLGVLFYTSSDYDRAKDCFEAALSIRPN 504
                 5777777645**************9998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                 +l+ s+ +++++++Al a+++ ++  P+
  CDO72496.1 511 RLGSSLSNGNKPEEALGAYREALQLRPT 538
                 6899999999*************99885 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleal 23 
                 A y+ + + ++ g + +A+e +
  CDO72496.1 542 AIYNVGVACLNIGAHKEAIEHF 563
                 88*********88*****9976 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-05     0.025       5      80 ..     488     564 ..     484     566 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHH.HHH--HHHHHH...HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   5 yknAiflaerllaaetespedayl...lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 y+ A  ++e +l   + +p+d +l   l+ +l + ++ ++A+  +r+a +l+++  ++ y  + ++l ++ ++eAi ++ 
  CDO72496.1 488 YDRAKDCFEAAL---SIRPNDYLLwnrLGSSLSNGNKPEEALGAYREAlQLRPTYTRAIYNVGVACLNIGAHKEAIEHFL 564
                 555555666666...4455554443778999**********************************************986 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   1.1e+03      68     121 ..     363     416 ..     320     421 .. 0.81
   2 ?   -1.4   0.0       1.2   1.2e+03     181     235 ..     451     506 ..     446     522 .. 0.75
   3 ?   12.2   0.0   8.6e-05      0.09     216     267 ..     521     572 ..     515     594 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
                 HHHHHHHHHH-STTHHHHHHHHHHHHHS----S-HHHHHHHHHHHHHTT-HHHH CS
  Coatomer_E  68 Avrllaeylnspsrkeeilaelkeeladseiesnevlrllaaivflkegdfdda 121
                 A  ll e +++++r ++++  l e + + e    + + +l+  + + +++f++a
  CDO72496.1 363 AWILLGETRSMDERDDAAMRALMEGVKRAEAAGAAGAGMLSLAITFTNESFEKA 416
                 555778888999999999999999998888888888888888888888888877 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
                 THHHHHHH.HHHHHHHHS---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-H CS
  Coatomer_E 181 ekiqdAyy.ifqelsekykstplllngkAvvslllgryeeAeslLkeaLdkdakde 235
                 e++ +A++ +  e   + +  p++  g  v   +  +y+ A+   + aL   ++d+
  CDO72496.1 451 EQVTEAFLkVAREQYSRGQIDPDVQIGLGVLFYTSSDYDRAKDCFEAALSIRPNDY 506
                 6677777545666666667788888999999999999********99999999886 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 8.6e-05
                 -HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-T CS
  Coatomer_E 216 ryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlklshp 267
                 ++eeA    +eaL+  + +  ++ N+ va++++g  +e++e++ls l  + +
  CDO72496.1 521 KPEEALGAYREALQLRPTYTRAIYNVGVACLNIGAHKEAIEHFLSALAMQES 572
                 79*******************************************9987654 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.6   1.7e+03      38      60 ..     333     355 ..     320     386 .. 0.75
   2 ?    9.2   0.2    0.0013       1.3       8      60 ..     485     537 ..     478     537 .. 0.91
   3 ?    8.1   0.0    0.0028       2.9       8      62 ..     519     573 ..     512     586 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
       TPR_9  38 llaqlGclsaAladLeaylalap 60 
                 lla+ G ls+A+  Lea++++ +
  CDO72496.1 333 LLARNGSLSEAALLLEAAIQHGD 355
                 78999999999999999998865 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 + d++ra  + e  l + P+d  ++   G  l   + +++Al +   +l+l p
  CDO72496.1 485 SSDYDRAKDCFEAALSIRPNDYLLWNRLGSSLSNGNKPEEALGAYREALQLRP 537
                 679****************************9999999999999999998876 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0028
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                  ++ e+al ++   l+l P   + ++  G++    G+ ++A++ +  +la++++ 
  CDO72496.1 519 GNKPEEALGAYREALQLRPTYTRAIYNVGVACLNIGAHKEAIEHFLSALAMQESS 573
                 577899*************************************999999888754 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.3   3.1e+02      24      55 ..     363     394 ..     346     406 .. 0.83
   2 ?   -0.8   0.0       1.9     2e+03      11      44 ..     495     528 ..     489     534 .. 0.87
   3 ?    9.2   0.0    0.0014       1.5       7      55 ..     525     573 ..     519     598 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.3
      TPR_20  24 arldlAlallaagryeeAleqLleilkrdrkw 55 
                 a + l +   + +r ++A+ +L+e +kr  ++
  CDO72496.1 363 AWILLGETRSMDERDDAAMRALMEGVKRAEAA 394
                 55667778888999*************98776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.9
      TPR_20  11 leaalaanpddldarldlAlallaagryeeAleq 44 
                 +eaal  +p+d+ +   l   l  +++ eeAl +
  CDO72496.1 495 FEAALSIRPNDYLLWNRLGSSLSNGNKPEEALGA 528
                 68899999999999999*************9975 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0014
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                  l + ++al+ +p+   a +++  a l  g ++eA+e++l+ l+ + + 
  CDO72496.1 525 ALGAYREALQLRPTYTRAIYNVGVACLNIGAHKEAIEHFLSALAMQESS 573
                 56788999*********************************99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3756.56
//
Query:       CDO72497.1  [L=529]
Description: hypothetical protein BN946_scf184980.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0014   18.4   0.0     0.0042   16.8   0.0    1.8  2  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
       0.62   10.3   3.1        3.1    8.0   0.1    3.1  2  TetR_C_31      Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.2   1.1e+04      18      31 ..      98     111 ..      86     117 .. 0.69
   2 !   16.8   0.0   4.7e-07    0.0042      37      79 ..     374     416 ..     369     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.2
                    ..--HHHHHHHTTT CS
  Dimer_Tnp_hAT  18 sefdvlewwkenss 31 
                      ++v+ w+ ++++
     CDO72497.1  98 AAIEVVRWFNNHGA 111
                    46789999988875 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.7e-07
                    HHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHH CS
  Dimer_Tnp_hAT  37 sklardvLsipvssaasErsFstlgkvllesrnsleplnveal 79 
                     kla+++Ls  v sa +E +Fs  gk+ ++ rn+l+p++v  +
     CDO72497.1 374 VKLAIRILSAAVNSAGPECVFSDFGKTRTKDRNRLRPSHVHDI 416
                    589***********************************99876 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00035       3.1      40      79 ..     151     190 ..     141     206 .. 0.92
   2 ?    0.8   0.5     0.064   5.8e+02      36      66 ..     404     434 ..     401     441 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHH CS
   TetR_C_31  40 LraalarlrralrealaallaalGlpdpeeaarllvaald 79 
                 Lr+al +++++ r+ l+++ +++   ++ e+ar+++a +d
  CDO72497.1 151 LRPALEACVARNRQTLVEIGEKSQTSNAKETARRVIASID 190
                 9************************88888******9886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.064
                 CSCHHHHHHHHHHHHHHHHHHHHHHHHCSS- CS
   TetR_C_31  36 rrPeLraalarlrralrealaallaalGlpd 66 
                  r +Lr++  +   +lr al++ + a+G+ +
  CDO72497.1 404 DRNRLRPSHVHDISTLRMALRREHVAAGRSN 434
                 5889************************953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3588.46
//
Query:       CDO72498.1  [L=473]
Description: hypothetical protein BN946_scf184980.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.49   10.9   6.0       0.16   12.4   2.5    2.0  2  Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) pr
        1.6    8.6   7.2        0.4   10.6   2.2    2.3  2  Takusan      Takusan
        5.9    7.4   8.7       0.76   10.3   3.8    1.9  2  DUF3106      Protein of unknown function (DUF3106)


Domain annotation for each model (and alignments):
>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         1     6e+03      66      75 ..     137     146 ..     127     160 .. 0.63
   2 ?   12.4   2.5   2.7e-05      0.16      36      76 ..     387     428 ..     385     429 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
  Fungal_TACC  66 kEKqeLlkll 75 
                  +E q+Ll+l+
   CDO72498.1 137 NEHQKLLELV 146
                  4555555543 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.7e-05
  Fungal_TACC  36 yqkkl.dklelenkslkqeieqLkkqleaerkEKqeLlklld 76 
                  y kk+ + +++e+ + k+e+e L+ q+e++++E+++Ll  l+
   CDO72498.1 387 YDKKIaEAVKKEQAERKREVELLTTQIEMVKEERKRLLDDLE 428
                  4444415678888999*********************98665 PP

>> Takusan  Takusan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       0.2   1.2e+03      66      82 ..     138     154 ..     131     160 .. 0.64
   2 ?   10.6   2.2   6.8e-05       0.4      10      41 ..     397     428 ..     392     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.2
     Takusan  66 qhekvMsdlqklqneis 82 
                 +h+k +  +q+lq+ + 
  CDO72498.1 138 EHQKLLELVQSLQQIHQ 154
                 45666666666665543 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.8e-05
     Takusan  10 lekeqakkklEeLkleLrkitreRdELrdiLa 41 
                  e+ ++k ++E L+++++ +++eR  L d L 
  CDO72498.1 397 KEQAERKREVELLTTQIEMVKEERKRLLDDLE 428
                 5788999******************9999886 PP

>> DUF3106  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.71   4.2e+03      30      51 ..     156     177 ..     137     192 .. 0.54
   2 ?   10.3   3.8   0.00013      0.76      23      89 ..     398     464 ..     389     472 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.71
     DUF3106  30 lleiaerykkltpeeqkrlqer 51 
                 l +i++ ++  ++ ++++l++ 
  CDO72498.1 156 LDTITRVFPGSQEVQRRQLKDL 177
                 3334444444444444444444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
     DUF3106  23 speqreklleiaerykkltpeeqkrlqermeewakLspeqreqarenyqklkqLppeereelrekwe 89 
                 ++++r++ +e+ ++  ++ +ee+krl + +e w++L  e+ + +r++ ++l++  +e ++ ++e w+
  CDO72498.1 398 EQAERKREVELLTTQIEMVKEERKRLLDDLEVWKALAIERDADLRARDADLRSRDAELKNCIEELWK 464
                 5677888889999999*************************************99999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3071.53
//
Query:       CDO72499.1  [L=289]
Description: hypothetical protein BN946_scf184980.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-12   47.8   0.0    3.6e-12   46.3   0.0    1.8  1  Abhydrolase_4  TAP-like protein
     0.0001   22.0   0.1    0.00056   19.6   0.1    2.0  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     4e-16   3.6e-12       6     100 ..     169     259 ..     164     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 4e-16
  Abhydrolase_4   6 aalaesllsCagwpvspqrprdestakg.aapvLllqnerDpaTPyegakklakalgg.avlvtvegeGHgalaagntCvdkavdaYLltGelpad 99 
                    a++      C  wpv+ ++  +   +++ a++vL+++n +D+aTP+  a+++a+ lg+ a+lv ++g G      ++tC  + ++ YL++G+lpad
     CDO72499.1 169 AFWPIPWHRCLYWPVRAVERYQGPFDRTlANRVLVIGNAYDNATPFFEAEHTADVLGDqAALVKQNGFG------YSTCTANIIRGYLANGTLPAD 258
                    555555556******999999999887757****************************99999988866......568****************96 PP

  Abhydrolase_4 100 d 100
                     
     CDO72499.1 259 H 259
                    4 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   6.2e-08   0.00056      74     125 ..      14      65 ..       6      76 .. 0.82
   2 ?   -0.5   0.0      0.09   8.1e+02     190     234 ..     179     221 ..     171     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.2e-08
                    SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHH CS
  Abhydrolase_1  74 kltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfp 125
                    +l+++G S+ +m+++++  ++p+rV +++l+g +d  +   +  +q ++ +p
     CDO72499.1  14 PLNYWGLSYSTMVGAWFMNMFPDRVGNVILDGVLDATSVATKQSYQTVHDHP 65 
                    799******************************6666666666666665555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.09
                    HHHHHCCHHHHHHHHHCTHHHHS.EEEEEEETTCSSSCHHHHHHHH CS
  Abhydrolase_1 190 eqwpttdsaklllrlrelknvla.ptlvisgtsDplvppkaledla 234
                     +wp+++   +++ +++    la  +lvi+ ++D+++p  + e  a
     CDO72499.1 179 LYWPVRAVERYQGPFDR---TLAnRVLVIGNAYDNATPFFEAEHTA 221
                    67777777777777777...44459999999999999877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:01.36
# Mc/sec: 643.30
//
Query:       CDO72500.1  [L=493]
Description: hypothetical protein BN946_scf184980.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-12   46.1   0.1      2e-05   24.5   0.0    3.4  3  O-FucT    GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.1e-09     2e-05       1      58 [.      71     121 ..      71     138 .. 0.84
   2 !   10.5   0.3     2e-05      0.35     161     202 ..     263     300 ..     192     311 .. 0.67
   3 !    6.7   0.0   0.00028       5.1     304     330 ..     442     477 ..     385     484 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-09
      O-FucT   1 YllynpaeGgfNnqrdvilrmvavarllnaTLVlPpwdqlshwrdsskqnrlpFsdfF 58 
                 +l y p +G f+nqr ++++++++ar+ln+TL lP +     + d+   ++ pF++++
  CDO72500.1  71 FLAYLPHSG-FHNQRIALENALVLARILNRTLLLPLIR----LGDPL--SYAPFDELY 121
                 688889999.*************************984....56665..566777666 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 2e-05
      O-FucT 161 v...daLrF.skeieelaaklvkrllekrkakggpylalHLRrekD 202
                     + + F ++++ ++a+ ++++l       gg yl++HLR++ D
  CDO72500.1 263 KrirERMAFkNPHLVRAAEVIRAAL-------GGSYLGVHLRIG-D 300
                 1455668883467777777777777.......9**********9.8 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.00028
      O-FucT 304 a.........aiDqiicsrsdvFigtyeStfsafvk 330
                            +D ++ +++   +gt +Stfsafv+
  CDO72500.1 442 GvplggflmpFLDAMVVGQAWQVVGTEQSTFSAFVS 477
                 14444555559***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3306.65
//
Query:       CDO72501.1  [L=1170]
Description: hypothetical protein BN946_scf184980.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-44  150.4   1.2    7.1e-20   71.7   0.1    3.9  4  Abhydrolase_1  alpha/beta hydrolase fold
    7.4e-42  141.7   0.0    2.6e-20   72.4   0.0    2.5  2  Abhydrolase_4  TAP-like protein
    0.00079   18.8   0.0         29    3.8   0.0    5.2  6  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.044   13.7   0.0        5.2    6.9   0.0    2.3  2  Ser_hydrolase  Serine hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   1.6e-23   7.1e-20       2     106 ..     133     289 ..     132     312 .. 0.84
   2 !    5.9   0.0    0.0019       8.5     206     251 ..     472     533 ..     393     536 .. 0.72
   3 !   68.2   0.1   1.9e-22   8.4e-19       2     118 ..     700     872 ..     699     912 .. 0.85
   4 ?   -0.2   0.0      0.14   6.4e+02     144     240 ..     953    1089 ..     929    1102 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1.6e-23
                    EEEEE-STTTCGGG.GTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.CHH....................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdv.waerglapaLakd...gfdvillDlrGvgySspapacinddy....................................... 54 
                    ++vi++G+pg s+  +++r+    +++     fd++++D+rG g S+pa +c +dd                                        
     CDO72501.1 133 TIVINPGGPGASGTyFIGRAG-AKISRVvgdSFDILGFDPRGTGASTPAATCFSDDSqrrlwqlqddhrllnltngaleiqrararmiaarceemi 227
                    79********66652555333.344444899*********************99333455566666667899999999999999999********* PP

                    ..........SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  55 ..........gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllga 106
                              +t +va+d+  i ++lg++kl ++G+S+G+ ++ ++ a+yp++V +l+ +g 
     CDO72501.1 228 ggkwgigrflSTPNVARDMLEISQQLGQEKLLYWGFSYGSVLGQYFSAMYPDKVGRLIIDGV 289
                    **********999***********************************************98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0019
                    C................THHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 206 e................lknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHl 251
                                      +n + p lvis+++Dp+ p  +a++       ++rl+v   +gH+
     CDO72501.1 472 CaewkirpkwrwtgpldAHNTSHPLLVISTRNDPVSPLpDAKVVHG-RYAGSRLLVQNSYGHC 533
                    04444444444455555599999**************966555444.4444488877777776 PP

  == domain 3  score: 68.2 bits;  conditional E-value: 1.9e-22
                    EEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB..CHH....................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacin.ddy....................................... 54 
                    +++i++G+pg+s+    +  ++++++     fd++++D+rG g S+p+ +c   d                                         
     CDO72501.1 700 TILINPGGPGGSGTDLVARAGQNISRIvgdSFDILGFDPRGIGASTPSASCFEtD-Sqrklwnlqeghrllnvtddtlairlarertvaercdeki 794
                    79********777755555*******9************************7750.255666667777778888889999999999999******* PP

                    ..........SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE....CSSCCHHHHHHH CS
  Abhydrolase_1  55 ..........gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllga....idpaaslieaqr 118
                              +t +va+d+  i+ +lg++kl ++G+S+G+ ++ ++ a yp+++ +++ +g     +  aa ++    
     CDO72501.1 795 ggewgigrfmSTPDVARDMLEIVHQLGQEKLQYWGFSYGSILGQYFSAIYPDKIGRVIIDGVydayNYRAALWNTNLV 872
                    **********9999***********************************************97665555555555544 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.14
                     HHCCSCHHHHHHHHHHHHHH...............HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC................ CS
  Abhydrolase_1  144 ladelaaleqrhrlvdalkf...............pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre................ 206 
                     +ad ++a+eqr +   al+                p+ +++  + + + a ++  ++ ++ e++++++++ + ++                   
     CDO72501.1  953 VADTVRAIEQRNQ--SALVAlapkivdpveckcaiPEPWRSDTEAFNAVACGDGDQHPYDPETYAAYYRDLSAQSELVapfwavhylqcaewri 1044
                     6667777777744..4666677777777777777777777777777777788888888888888888888877777768888888888888888 PP

                     .........THHHHS..EEEEEEETTCSSSCHHHHHHHHHCHTSE CS
  Abhydrolase_1  207 .........lknvla..ptlvisgtsDplvppkaledlaqllpkk 240 
                              l +++   p+l+is + Dp+ p        + + ++
     CDO72501.1 1045 rpkwrwtgpLEAMNTshPVLLISPRFDPVCPLTDAKAVHERFGGS 1089
                     88888899977777777******9*99999997776666666665 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   3.3e-22   1.5e-18       5     103 .]     462     562 ..     458     562 .. 0.90
   2 !   72.4   0.0   5.9e-24   2.6e-20       4     103 .]    1028    1129 ..    1025    1129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3.3e-22
  Abhydrolase_4   5 gaalaesllsCagwpvspqrprdesta.kga.apvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGelpa 98 
                       +    l+Ca w+ +p++      + +++ +p L++++++Dp+ P+  ak ++ ++ g++l+++++ GH++l++++ C  k+++aY+++G+lp+
     CDO72501.1 462 APLWGIYYLMCAEWKIRPKWRWTGPLDaHNTsHPLLVISTRNDPVSPLPDAKVVHGRYAGSRLLVQNSYGHCSLSGPSLCTGKHIRAYFENGTLPE 557
                    5567777788******9999988888524445**************************************************************** PP

  Abhydrolase_4  99 ddtvC 103
                    ++tvC
     CDO72501.1 558 PGTVC 562
                    ****9 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 5.9e-24
  Abhydrolase_4    4 fgaalaesllsCagwpvspqrprdesta..kgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLltGe 95  
                     +  ++a   l+Ca w  +p++      +  ++++pvLl++ + Dp++P+  ak++++++gg+ l+++++ GH++l+a++ C  k+v+aY+ +G+
     CDO72501.1 1028 VAPFWAVHYLQCAEWRIRPKWRWTGPLEamNTSHPVLLISPRFDPVCPLTDAKAVHERFGGSGLLVQNSFGHCSLSAPSLCTAKHVRAYMVNGT 1121
                     567899999******999999888777522335************************************************************* PP

  Abhydrolase_4   96 lpaddtvC 103 
                     lp+++tvC
     CDO72501.1 1122 LPEPGTVC 1129
                     *******9 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.043   1.9e+02       4      48 ..     131     180 ..     128     197 .. 0.70
   2 !    3.6   0.0    0.0073        33      69     106 ..     249     286 ..     237     301 .. 0.87
   3 ?   -1.9   0.0      0.36   1.6e+03     187     208 ..     489     510 ..     482     523 .. 0.82
   4 ?   -0.4   0.0      0.13   5.7e+02      22      47 ..     721     746 ..     696     758 .. 0.81
   5 ?    0.8   0.0     0.053   2.4e+02      54     106 ..     805     853 ..     797     869 .. 0.81
   6 !    3.8   0.0    0.0064        29     151     218 ..    1010    1087 ..     998    1099 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.043
  Hydrolase_4   4 kavvvlvHGlaehsgry.....aelaeaLaaqGfavyalDhrGhGrsegk 48 
                  k+++v+ +G    sg y        + + +   f+++++D rG G s ++
   CDO72501.1 131 KGTIVINPGGPGASGTYfigraGAKISRVVGDSFDILGFDPRGTGASTPA 180
                  566666666655555552221145667888999*************9854 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0073
  Hydrolase_4  69 vkeehpelplfllGhSmGGliallyllrypdkvaglil 106
                  + ++ ++++l  +G S G+++ + + ++ypdkv +li+
   CDO72501.1 249 ISQQLGQEKLLYWGFSYGSVLGQYFSAMYPDKVGRLII 286
                  4566677899***********************99997 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.36
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpe 208
                  a++ + Pll+++  +D+v +  
   CDO72501.1 489 AHNTSHPLLVISTRNDPVSPLP 510
                  677889***********98755 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.13
  Hydrolase_4  22 elaeaLaaqGfavyalDhrGhGrseg 47 
                  + + + +   f+++++D rG G s +
   CDO72501.1 721 QNISRIVGDSFDILGFDPRGIGASTP 746
                  5566778889*************975 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.053
  Hydrolase_4  54 sfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglil 106
                  s+ d+ +D+ ++v+++     +++l  +G S G+++ + + + ypdk+ ++i+
   CDO72501.1 805 STPDVARDMLEIVHQLG----QEKLQYWGFSYGSILGQYFSAIYPDKIGRVII 853
                  56667777777776666....556778*******************9988886 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.0064
  Hydrolase_4  151 dpevvaayeadplv.hgkitvrlllelldamkrleeraakit.........lPllllhGeaDkvvdpeasrelyerlg 218 
                   dpe  aay +d    ++ +   ++++ l+ +++  + ++++t          P+ll++   D+v++  ++++++er g
   CDO72501.1 1010 DPETYAAYYRDLSAqSELVAPFWAVHYLQCAEWRIRPKWRWTgpleamntsHPVLLISPRFDPVCPLTDAKAVHERFG 1087
                   8999999999999999999999********************99999999999*****************99999987 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0012       5.2     104     153 ..     483     533 ..     468     537 .. 0.84
   2 ?    4.2   0.0    0.0077        34     101     153 ..    1047    1100 ..    1024    1105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0012
                    GCTTS-SSHHCCHCEEEEETTBTTC-HHHHHHH.HHHCT-EEEEETT-TTS CS
  Ser_hydrolase 104 efaplpreklpfpslvvaSenDpyvsfeeaeel.aeawgaelvdlgeaGHi 153
                       pl +++ + p lv++ +nDp+ +   a+ + ++  g++l + ++ GH 
     CDO72501.1 483 WTGPLDAHNTSHPLLVISTRNDPVSPLPDAKVVhGRYAGSRLLVQNSYGHC 533
                    56788889999999****************987256679999999999996 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0077
                     GGCGCTTS-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT.-EEEEETT-TTS CS
  Ser_hydrolase  101 elaefaplpreklpfpslvvaSenDpyvsfeeaeelaeawg.aelvdlgeaGHi 153 
                     + +   pl++ + + p l+++ + Dp+++ + a+++ e++g + l + ++ GH 
     CDO72501.1 1047 KWRWTGPLEAMNTSHPVLLISPRFDPVCPLTDAKAVHERFGgSGLLVQNSFGHC 1100
                     555667778888888999*********************972556666778886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 7825.64
//
Query:       CDO72502.1  [L=475]
Description: hypothetical protein BN946_scf184980.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-05   23.9   0.0      0.035   13.8   0.0    2.7  2  PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr


Domain annotation for each model (and alignments):
>> PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     2e-06     0.035      17      42 ..     156     181 ..     141     199 .. 0.79
   2 !    6.6   0.0   0.00032       5.8     139     246 ..     337     442 ..     283     450 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-06
  PC-Esterase  17 rlafVGDSlarnqweSLlClLssave 42 
                   ++++GDS+ +n++ SL ClL   v 
   CDO72502.1 156 GWLLIGDSVTENHFFSLSCLLYPHVL 181
                  5789*****************87764 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00032
  PC-Esterase 139 nvkelevleay.rkalrtlakwvdknldskktkvffrtispsHfeggewneggsCk.eteplkeeeveleglekelrkvveeevekekktrvelldit 234
                   ++e e++e++ +ka ++ + w  +  +++ ++v+ r + p H   ++         e +p + + +++++++ +++++ +  ++++k  ++++l i 
   CDO72502.1 337 LLDEAEREEQLaEKASKERLPWNGRDRKRAPRQVLARAYLPGHEDCHDYRA---PWtEYKPGRWGWYNWNQIQ-DFNRIFDTILASRKFPDIHYLPID 430
                  333333333221344444444444444444456666666666633222222...2225555555544444443.466677777778888889999999 PP

  PC-Esterase 235 klselRkDgHps 246
                  + + lR+D+H +
   CDO72502.1 431 RPARLRPDAHAA 442
                  999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3427.60
//
Query:       CDO72503.1  [L=376]
Description: Carbohydrate-Binding Module Family 1 / Carbohydrate Esterase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-23   81.5   0.7    1.2e-22   80.6   0.7    1.4  1  Esterase_phd   Esterase PHB depolymerase
    4.6e-14   52.1   8.2    1.9e-13   50.1   8.2    2.2  1  CBM_1          Fungal cellulose binding domain
    7.5e-10   38.6   0.5    1.5e-09   37.7   0.5    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0032   16.4   0.0     0.0072   15.2   0.0    1.5  1  COesterase     Carboxylesterase family
  ------ inclusion threshold ------
      0.055   13.3   0.0       0.09   12.6   0.0    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.7   3.2e-26   1.2e-22       5     187 ..     120     310 ..     117     326 .. 0.78

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.2e-26
  Esterase_phd   5 lyl.ppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwyk..dtdraGrGeaavvvalvdalvdehrvdaar 98 
                   +y+  p + ++  pl+v  h ct s++ + +G+++  la+ +G+vvlyp      ++  cw+        ++G  ++  +++ ++  +++ +vd+ r
    CDO72503.1 120 MYVyKPARVQAKPPLIVASHYCTGSAQAYYSGSKFAQLAETYGYVVLYPSS---PHSGTCWDVSSteTLTHNGGSDSLGIASAARYAITNWGVDPDR 213
                   56623667777789***********************************86...68999**998752456778888999****************** PP

  Esterase_phd  99 vyvaGlsaGaaladllalhypdvfaavalhsGlalGeaadvisaldvmrrGlrqapaaavd...alveagaypg....lpal.vvqGdadtvvavkn 187
                   v+  G s+Ga ++++la  ypdvf a  + sG+a+G+ a      d       q     ++   a+   +aypg     p + v +G adt++ ++n
    CDO72503.1 214 VFAVGTSSGAMMTNVLAGAYPDVFKAGIVDSGVAFGCFALPGQPEDSWNAQCAQGQLILTGqqwAQKVFSAYPGytgtYPKIqVWHGTADTTLYPQN 310
                   *************************************886666555555544444433333111333344677622233555477899999988888 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   8.2   5.2e-17   1.9e-13       1      29 []      23      59 ..      23      59 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 5.2e-17
       CBM_1  1 lwgQCGGigWtGpTtC........vsgatCtyqNeyY 29
                +wgQCGGigWtGpTtC        v+g+tC++ N++Y
  CDO72503.1 23 VWGQCGGIGWTGPTTCarthalytVAGSTCVKENDWY 59
                5**********************999*********** PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.5   4.2e-13   1.5e-09      11     161 ..     159     310 ..     149     317 .. 0.69

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.2e-13
                   HCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHH...HHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCH CS
  Peptidase_S9  11 adrGyvvvvanirGsggyGeafhdagkrklgqnefdD...fiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlry 104
                      Gyvv+++    s + G  +  + ++ l  n  +D   +  aa++++++  vd++r+++ G+S G ++t+++++  pd+Fka++   +v+     
    CDO72503.1 159 ETYGYVVLYPS---SPHSGTCWDVSSTETLTHNGGSDslgIASAARYAITNWGVDPDRVFAVGTSSGAMMTNVLAGAYPDVFKAGIVDSGVAFGCFA 252
                   55566666665...5555566666555555555555522267899999**99***********************************9998765554 PP

                   HCSTTS..THH.HCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THH CS
  Peptidase_S9 105 dsdtdl..lte.eymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppae 161
                      +    +++   +++   + ++   k +s+y  ++    yp++ + hG+aD+   p++
    CDO72503.1 253 LPGQPEdsWNAqCAQGQLILTGQQWAQKVFSAYPGYTG--TYPKIQVWHGTADTTLYPQN 310
                   44432234555222222222223334445677777777..9************9998886 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-06    0.0072     176     235 ..     203     260 ..     201     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2e-06
                 HGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSHHHHH CS
  COesterase 176 nIasFGGdpervtlfGesAGaasvsllllsplsrglfkraIlqSGsalspwaiqkkarkr 235
                  I + G dp+rv  +G+s+Ga++ ++l       + fk  I+ SG+a+  +a+  ++ ++
  CDO72503.1 203 AITNWGVDPDRVFAVGTSSGAMMTNVLAG--AYPDVFKAGIVDSGVAFGCFALPGQPEDS 260
                 58999******************998764..45568************999998885544 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.5e-05      0.09      57      99 ..     201     240 ..     180     310 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
                    HHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT--- CS
  Abhydrolase_3  57 rwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk 99 
                    r++ +   + g+dp+r++ +G+S G+ ++ ++a +  d  + +
     CDO72503.1 201 RYAIT---NWGVDPDRVFAVGTSSGAMMTNVLAGAYPDVFKAG 240
                    33333...589********************997766654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2747.83
//
Query:       CDO72504.1  [L=357]
Description: Carbohydrate-Binding Module Family 1 / Carbohydrate Esterase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-20   71.8   0.0    9.4e-20   71.1   0.0    1.3  1  Esterase_phd  Esterase PHB depolymerase
    3.1e-12   46.2   2.1    8.5e-12   44.8   2.1    1.8  1  CBM_1         Fungal cellulose binding domain
    4.3e-07   29.6   0.4    8.1e-07   28.7   0.4    1.3  1  Peptidase_S9  Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.028   13.3   0.3      0.028   13.3   0.3    1.9  3  COesterase    Carboxylesterase family


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   2.1e-23   9.4e-20       8     188 ..     106     292 ..     100     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 2.1e-23
  Esterase_phd   8 ppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwyk..dtdraGrGeaavvvalvdalvdehrvdaarvyva 102
                    p ++++  pl+v  h ct +++ + +G+++  la+ +G+ vl+p      + + cw+        ++G  ++  ++  ++  + + +vd+ rv+  
    CDO72504.1 106 KPARPQAKPPLIVASHFCTGTAQIYFEGSKFAQLAETFGYLVLFPSS---PHPDLCWDVSSaeTLTHNGGSDSLSIANAARFAIANWGVDPNRVFAV 199
                   478999999************************************75...6899****987524567788889999*****99************** PP

  Esterase_phd 103 GlsaGaaladllalhypdvfaavalhsGlalGeaadv...isaldvmrrGlrqapaaavdalveagaypgl....pal.vvqGdadtvvavkna 188
                   G s+Ga ++++la  ypd f a  + sG+a+G+ ++     +  +v  +G     +     lv   a+pg+    p +   +G  dt+v v+n 
    CDO72504.1 200 GTSSGAMMTSVLAGAYPDIFKAGVVDSGVAFGCFSSPgplDTFNEVCASGNVIMTGQQWAQLVFN-AFPGFtgprPKIqTWHGTVDTTVFVQNF 292
                   *********************************88741113444555666655555555555544.7777544334443568888888888775 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   2.1   1.9e-15   8.5e-12       2      28 ..      28      54 ..      27      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.9e-15
       CBM_1  2 wgQCGGigWtGpTtCvsgatCtyqNey 28
                +gQCGG+g+tGpT C++g+tC++qN +
  CDO72504.1 28 FGQCGGQGFTGPTICAAGSTCVEQNSF 54
                8************************86 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.4   1.8e-10   8.1e-07      48      99 ..     178     229 ..     165     234 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.8e-10
                   HHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE-- CS
  Peptidase_S9  48 fiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvv 99 
                   + +aa++++++  vd++r+++ G+S G ++t ++++  pd+Fka+v   +v+
    CDO72504.1 178 IANAARFAIANWGVDPNRVFAVGTSSGAMMTSVLAGAYPDIFKAGVVDSGVA 229
                   678999999999***********************************99985 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.22     1e+03     176     190 ..      89     103 ..      88     105 .. 0.87
   2 ?   13.3   0.3   6.3e-06     0.028     177     225 ..     186     232 ..     183     256 .. 0.84
   3 ?   -3.8   0.1      0.93   4.2e+03      43      64 ..     269     291 ..     269     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.22
                 HGGGGTEEEEEEEEE CS
  COesterase 176 nIasFGGdpervtlf 190
                 +I +FG +p++v  f
  CDO72504.1  89 QITNFGTNPNNVGMF 103
                 799********9765 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.3e-06
                 GGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEEES--TTST CS
  COesterase 177 IasFGGdpervtlfGesAGaasvsllllsplsrglfkraIlqSGsalsp 225
                 Ia+ G dp+rv  +G+s+Ga++ s+l       + fk  ++ SG+a+  
  CDO72504.1 186 IANWGVDPNRVFAVGTSSGAMMTSVLAG--AYPDIFKAGVVDSGVAFGC 232
                 99********************998754..4456899999999999865 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.93
                 TS--BE.----SSEEECBS---B CS
  COesterase  43 FkkPep.aepwtgvrdAtkfspa 64 
                 F  P+p  ++w+g++d+t f ++
  CDO72504.1 269 FTGPRPkIQTWHGTVDTTVFVQN 291
                 66688877999999999988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2441.32
//
Query:       CDO72505.1  [L=1071]
Description: hypothetical protein BN946_scf184980.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   14.6   2.4         14    6.8   0.1    4.2  4  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.31   5.5e+03      15      28 ..      53      69 ..      49      75 .. 0.72
   2 ?    3.8   0.0    0.0067   1.2e+02      15      38 .]     109     137 ..     100     137 .. 0.80
   3 ?   -0.4   0.0      0.15   2.6e+03       8      28 ..     179     203 ..     175     207 .. 0.66
   4 ?    6.8   0.1   0.00078        14      13      38 .]     228     253 ..     214     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.31
                EEEEETTSSE...EEEE CS
        WD40 15 slafspdgaw...lasG 28
                ++a+spd  +   +a G
  CDO72505.1 53 CFAWSPDPVLddlVAVG 69
                999***98887755566 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0067
                 EEE.EETTSSEEEEEET....TSEEEEEE CS
        WD40  15 sla.fspdgawlasGsd....DgtvriWd 38 
                 +la  s d ++la G d    D+++ iWd
  CDO72505.1 109 ALAfSSADPSYLAVGLDkvrnDPSLLIWD 137
                 55557889999*999545777*******9 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.15
                 ESSSS...EEEEEEETTSSEEE.EE CS
        WD40   8 tGHss...vtslafspdgawla.sG 28 
                   H +   v+sla+ p ++ l+ +G
  CDO72505.1 179 QQHAPvenVSSLAWLPQSSSLLlAG 203
                 5675555589999888877753255 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.00078
                 EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  13 vtslafspdgawlasG.sdDgtvriWd 38 
                 v ++a++p  a  +++ + Dg v iWd
  CDO72505.1 228 VQGIATDPFDAHRVASfG-DGIVSIWD 253
                 889999999999666746.*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 7254.36
//
Query:       CDO72506.1  [L=1093]
Description: hypothetical protein BN946_scf184980.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-40  137.5   0.1    2.4e-30  105.7   0.0    2.4  2  AIRS_C          AIR synthase related protein, C-terminal doma
    2.5e-31  108.0   0.0      6e-31  106.8   0.0    1.7  2  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe
    8.2e-22   77.5   0.0    1.8e-21   76.4   0.0    1.6  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe
    1.6e-14   53.6   0.0    2.7e-14   52.9   0.0    1.3  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
  ------ inclusion threshold ------
       0.12   13.0   0.5       0.86   10.3   0.0    2.4  2  AIRS            AIR synthase related protein, N-terminal doma


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   6.7e-34   2.4e-30       2     154 ..     504     661 ..     503     663 .. 0.96
   2 !   29.5   0.0     2e-10     7e-07      13     115 ..     924    1019 ..     918    1036 .. 0.81

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 6.7e-34
                 TTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTH CS
      AIRS_C   2 pGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidldkv 94 
                 pG ++i++g+    +Glgg + s+++ +  +++ld  +vq++++++ +++++v +a+  l  ++++ ++hDv++GGL++al+e++++s++ga++++ ++
  CDO72506.1 504 PGAKIIVLGGpgllIGLGGGAASSQVSGAGSADLDFASVQRDNAEMQRRCQQVIDACTNLgdDNPIQSIHDVGAGGLSNALPELVHDSDLGATFEIRDI 602
                 899******************9999999999888877************************************************************** PP

                 HHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEEEE CS
      AIRS_C  95 pifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeelsvi 154
                  + d  +sp+e+++ e+++r+++a++pe+ad +++++e+e++p ++++G++ +++el v+
  CDO72506.1 603 LVADSSMSPMEIWCNESQERYVLAISPEKADLFRSLAERERCP-FSIVGTANDSDELVVT 661
                 ******************************************7.**********999886 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 2e-10
                  SCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH.HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHHHHHHHH CS
      AIRS_C   13 Glggagtslkrkileeeglddsavqlgdvlleptliyvkralaal.kglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdelesplemll 108 
                   lgg++++ + k++ + + d     +++++ ++    + +a+ ++  + v a hD ++GGL  +l ema+a++ g++++ld++ + +   + + +l+
  CDO72506.1  924 RLGGSAVAQVFKQVGSGAPD-----VVEAQDVKSFFVASQAIRQElPDAVLAYHDRSDGGLFTTLVEMAFAGRTGLQVNLDAISAGS---DYISALF 1012
                  67888977777777777666.....9999999999999999999999**********************************555444...4566666 PP

                  CSTTTEE CS
      AIRS_C  109 sensGrl 115 
                   e+ G +
  CDO72506.1 1013 NEELGAV 1019
                  6665544 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   1.7e-34     6e-31       2     115 .]      71     202 ..      70     202 .. 0.83
   2 ?   -3.5   0.0       2.7   9.8e+03      46      56 ..     311     321 ..     311     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1.7e-34
   FGAR-AT_N   2 yvhfvel.....eeels...eeeravleqlLeygdk......leeeeeegelllVvPRlGtiSpWsSkAtdIahncgle.kvkRiErgiayvlel...k 82 
                 y+h+v++     e +ls   +  r++l++lL+ygd+      +++ +e+ ++ +V+PR+G+iSpWsSkAtdIa +c l+ +v+R+Erg ayv+++   +
  CDO72506.1  71 YIHLVACrspaaEGQLSnaeSPFRRILDRLLDYGDNvqlpgtASALSERRNVAFVLPRPGSISPWSSKATDIAAICRLReQVERLERGFAYVFTTndgS 169
                 7788887556554455422255689**********9555555555556666****************************9***************6444 PP

   FGAR-AT_N  83 elseeelaalaalLhDrmtesvleeledaealF 115
                 ++++e ++++a l+hDrmt++v+ +l+d+e++F
  CDO72506.1 170 DVTSELVDRIAPLIHDRMTQVVQLSLPDTETIF 202
                 999999************************998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
   FGAR-AT_N  46 lGtiSpWsSkA 56 
                 +GtiS++s +A
  CDO72506.1 311 IGTISAYSDNA 321
                 69******887 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0     5e-25   1.8e-21       1      50 []     228     281 ..     228     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 5e-25
  FGAR-AT_linker   1 LeeankelglaLsdeEidylqeaf....eklgrnPtdvElemfaqvwSEHCrHK 50 
                     L +ankelglaLs +Eidyl +a+    + ++rnPtd+El+mfaqv+SEHCrHK
      CDO72506.1 228 LVAANKELGLALSSDEIDYLIDAYvtgnSPINRNPTDAELFMFAQVNSEHCRHK 281
                     5689**********************9989***********************9 PP

>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   7.4e-18   2.7e-14     206     260 .]    1034    1091 ..    1030    1091 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 7.4e-18
    GATase_5  206 pegiagitspdGRvlalmpHpervveavqksiipe...eeeeevspwlrlFenavkyv 260 
                  p gi+g+ +pdGRvlalmpHpervv+  ++s++p+   + +++++pw+rlF++a+k++
  CDO72506.1 1034 PGGITGVQTPDGRVLALMPHPERVVTLESNSWYPPefaGAWQGTGPWFRLFQSARKWC 1091
                  579*******************************9665567779*************8 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024      0.86       5      52 ..     359     407 ..     319     457 .. 0.77
   2 ?   -0.2   0.3      0.45   1.6e+03      24      54 ..     795     836 ..     761     892 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00024
                 EEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTT..TEEEEEEEEEEEE CS
        AIRS   5 vvvttdshnrpvlvepvhfiGakavavnlsDlaam..GArPlalllslal 52 
                 ++v++++hn+p++v+p+ + +a++ ++ ++D  a+  G +P a l  +++
  CDO72506.1 359 ILVKVETHNHPTAVSPYPG-AATGSGGEIRDEGAVgrGSKPKAGLAGFTV 407
                 599****************.***********7765226777776666665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC............H CS
        AIRS  24 iGakavavnlsDlaamGArPlalllslalp............w 54 
                  ++ ava+ l +l+a + r l+  + l+ +             
  CDO72506.1 795 STRMAVAESLMNLVAANVRDLG-RVKLSANwmcaaskegegaA 836
                 4678888888888888877774.33333333355555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1093 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.54
# Mc/sec: 6051.03
//
Query:       CDO72507.1  [L=476]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-30  106.3   0.0    3.4e-30  105.7   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
      2e-09   37.5   0.0      3e-09   36.9   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    6.5e-08   32.2   0.0    3.8e-07   29.8   0.0    1.9  1  Glyco_transf_21  Glycosyl transferase family 21
     0.0081   16.1   5.6      0.015   15.2   5.6    1.5  1  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   7.5e-34   3.4e-30       3     229 ..      52     284 ..      50     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 7.5e-34
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      d++++Vpt+++ ++  e  +s l+    + e+ ++++e+  + l+++   a +++++rv +v+ a+      k+  ++++++++++d++++ Dd
       CDO72507.1  52 DVTIIVPTIDAGEEFKEAAHSWLV--GKPKEILIITEEKMLGPLQELAN-AVDPERIRVLTVPFAN------KRLQMSHGIKNTTTDIIVFADD 136
                      599*********************..799********999997766644.4455555555555555......8999****************** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqffltpkvgavgtpvflln...rstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele........gl 178
                      D+++ P++l+++l+ f+++kvg vgt+++++    r t++ +l a+++ +r++++ + ++  g  ++l+G++ ++r+ +lk++e         +
       CDO72507.1 137 DAIWPPTLLPYVLACFEDQKVGGVGTSQRVQPvgdRMTVWEVLAAFRLSIRNIEIASSTHIDGgLPCLSGRTAAYRTVILKDPEflhgfthdYW 230
                      *******************************76334477**********************9856*************************9856 PP

  Glyco_tranf_2_3 179 dp..lflltdDyelglrlrragfrtay..vpgaavrevfpsslkayikqrnRwvy 229
                       +  + + +dD++l++++ ++g+ t++  +++a+  ++  +  +++ kq  Rw++
       CDO72507.1 231 LGkyQLNSGDDKFLTRWMVSHGWSTYVqvCKEAELLSTM-KPNWRFLKQVLRWTR 284
                      66699********************97446666544332.45999********97 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   6.7e-13     3e-09       2     165 ..      55     215 ..      54     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6.7e-13
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-TT CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdpd 95 
                      +++pt    ++ +e+ +s l     + +ei+++      +  + l +++  ++r+rv++ +    k   + +g++++t+d+i+f D+D +++p 
       CDO72507.1  55 IIVPTIDAGEEFKEAAHSWLVG---KPKEILIITEEKMLGPLQELANAV-DPERIRVLTVPFA-NKRLQMSHGIKNTTTDIIVFADDDAIWPPT 143
                      8888888888888888888887...888999998888666666666666.5**********88.****************************** PP

                      HHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS..EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHH CS
  Glycos_transf_2  96 wleklvealekdgadvvlgqrprifgetdeiernkrv..generlyfkerkrslkgnlsfeigsaallrrea 165
                       l+ +++ +e+  +++v  + ++ +++++   +      +   r  +      ++g+l++ +g  a++r  +
       CDO72507.1 144 LLPYVLACFEDQKVGGVGTSQRVQPVGDRMTVWEVLAafRLSIRNIEIASSTHIDGGLPCLSGRTAAYRTVI 215
                      ***********8888888777777666655555444432333333333333444556667777777776655 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   8.4e-11   3.8e-07      17     173 .]     114     284 ..     104     284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 8.4e-11
  Glyco_transf_21  17 pKvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdak...glaaaleaafln.tlagvlqa.kl.sglgfavGk 104
                      +K  +++++++   +d++v++D+d++ +p+ L  +la +ed+kvg V    ++ +     +++  l+a  l+  +  ++++ +  +gl +  G 
       CDO72507.1 114 NKRLQMSHGIKNTTTDIIVFADDDAIWPPTLLPYVLACFEDQKVGGVGTSQRVQPVGdrmTVWEVLAAFRLSiRNIEIASStHIdGGLPCLSGR 207
                      466699****************************************9877776554423389998877777525567777754567******** PP

  Glyco_transf_21 105 smalrreaLeaiGGfealad..eL.......AeDyalgkllraaGlkvvlspapiaqtsvpr.rsslrallaRqlrWar 173
                      + a+r+ +L++   +  + +  +L        +D +l++++ ++G+++++     + + +++ +  +r +l+++lrW r
       CDO72507.1 208 TAAYRTVILKDPEFLHGFTHdyWLgkyqlnsGDDKFLTRWMVSHGWSTYVQVC-KEAELLSTmKPNWR-FLKQVLRWTR 284
                      *********98554444443112322223447999999999999999877654.24444444544687.9999999976 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   5.6   3.3e-06     0.015       1     172 [.     130     329 ..     130     402 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.3e-06
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaelaspevaivqgpvlvmnvanwleelaalf...faedhgkdilvrealgrvvpsv.Gsgaflrrsalqevg.. 88 
                      ii++ D+D   pp  l +++a +++++v+ v +   v++v++ ++ + +l     +++ + + +++  + + +p+  G+ a+ r   l++    
       CDO72507.1 130 IIVFADDDAIWPPTLLPYVLACFEDQKVGGVGTSQRVQPVGDRMTVWEVLAafrLSIRNIEIASST-HIDGGLPCLsGRTAAYRTVILKDPEfl 222
                      7999********************9*********99986655555555444311677777777775.6667788777************88844 PP

  Glyco_trans_2_3  89 ......gwdgdes....svsEDfdmglrlqrkGyrv..rfvpes.lvkekspltlraalrQrkRwayGceleklil.................. 151
                            +w    +    + ++D+++   + ++G+ +    + e+ l  +  p+  + +l+Q  Rw+++      ++                  
       CDO72507.1 223 hgfthdYWL---GkyqlNSGDDKFLTRWMVSHGWSTyvQVCKEAeLLSTMKPN--WRFLKQVLRWTRNT-----WRsdlrslfmeryiwtahpy 306
                      545444555...05555777777777777799977732233333366666666..78***********6.....33222222112222233333 PP

  Glyco_trans_2_3 152 ........lvrllgylgsllwsalplhla 172
                              l++++ +l+ +      +++a
       CDO72507.1 307 vaytmvdkLFNPFTLLAGP------VLVA 329
                      3333222211111111111......1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.54
# Mc/sec: 2638.77
//
Query:       CDO72508.1  [L=456]
Description: hypothetical protein BN946_scf184980.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-30  104.1  26.3    5.3e-15   55.2   5.5    2.1  2  Sugar_tr  Sugar (and other) transporter
    4.6e-20   71.9  21.5    8.9e-11   41.3   1.8    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   5.5   5.9e-19   5.3e-15       6     199 ..      52     243 ..      48     254 .. 0.81
   2 !   54.8  12.8   8.1e-19   7.3e-15     291     435 ..     288     427 ..     255     434 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 5.9e-19
                 HHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT..... CS
    Sugar_tr   6 alggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk..... 99 
                  +g +l  Yd+++i++++t+l+  ++ +  ++  +  e     g+i + +++G++iG++ +g+ +d+fGRk ++    +l + +++ +++a+ +     
  CDO72508.1  52 GVGFFLDAYDLFIINPVATMLQ--YRLYGGNELPPGLE-----GFIKAGANIGSVIGQFAFGYSADYFGRKAVYGKELMLIIFATIGTICAPTGaisps 143
                 4666999***************..66666666655544.....9****************************997766666667777777775567788 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHH.HHHHGGGS---HHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpall.llilllflPESPry 197
                  s+  l+v R+++Gig+G+ + ++   +   A  k Rg+l s+      +G +v++  + ++  + +   + +    + v   +  l+ +l+lPES ry
  CDO72508.1 144 GSLIWLAVWRIILGIGIGGDYPMSASVATDRANLKRRGTLLSYIFANQGWGSFVGSLATIIILLCYK-HVMEVDGQTSKVDGAFgTLYQRLTLPESTRY 241
                 999******************************************************9999988888.5555544444443333156667889999888 PP

                 HH CS
    Sugar_tr 198 lv 199
                   
  CDO72508.1 242 VE 243
                 74 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 8.1e-19
                 HHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskal 388
                 ++++iv ++ fv    + i++++++GR+ + + G++ +a+++ il++ ++ l++        ++v++a+  ++f++g +++ +++ +E+fp+++R++a 
  CDO72508.1 288 VGNLIVTALGFVPGYYVtILTIEKLGRKWIQIQGFLLAALFLGILAGKFHELST------ASFVVCFAFLQFFFNFGANTTTYCYPAEVFPTRFRASAH 380
                 6899999999997766659********************999999833333333......457788888888*************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 389 aiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvff 435
                  +++a+     ++ +l f  +t++ig + v ++f g++++++ f+++
  CDO72508.1 381 GMSAACGKAGAIISALAFNSLTKKIGTPAVLWIFFGCCIAGAGFTLL 427
                 ********************************************975 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  12.2   3.7e-13   3.3e-09       3     144 ..      53     205 ..      51     208 .. 0.82
   2 !   41.3   1.8   9.9e-15   8.9e-11      40     178 ..     293     434 ..     254     452 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 3.7e-13
       MFS_1   3 laaflsalarsilgpalplalaedlg....ispseigllltlyalgaavaslplGrlsdrfGrrrvll..lglllfalglllll.fa....sslw.lll 89 
                 +++fl a++ +i++p+++ +l+  l     + p   g++ ++  +g++++++ +G+ +d fGr+ v+   l+l++fa  +++++  +    s++  +l+
  CDO72508.1  53 VGFFLDAYDLFIINPVAT-MLQYRLYggneLPPGLEGFIKAGANIGSVIGQFAFGYSADYFGRKAVYGkeLMLIIFATIGTICApTGaispSGSLiWLA 150
                 689999999999999999.55444333555778888889999*************************755555555555577774113568788889** PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggll 144
                 v r++ G+g g+ +p++a++++d ++ ++rg  ++++ a  + G+ +g l+  ++
  CDO72508.1 151 VWRIILGIGIGGDYPMSASVATDRANLKRRGTLLSYIFANQGWGSFVGSLATIII 205
                 ************************************************8876655 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 9.9e-15
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll..fa....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagf 130
                 + alg++ + +++   ++++Gr+++ + g+ll al+ ++l +  f+    +s+   +++l ++  +g   ++++ + + a++fp + r++a g+ +a+ 
  CDO72508.1 293 VTALGFVPGYYVTILTIEKLGRKWIQIQGFLLAALFlGIL-AgkFHelstASFVvCFAFLQFFFNFG---ANTTTYCYPAEVFPTRFRASAHGMSAACG 387
                 4678889999999999********************4444.45885554455554566666666666...6**************************** PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                  +Gai+ +l+   l+  +g +av +i+ + ++ ++  f lllpe + +
  CDO72508.1 388 KAGAIISALAFNSLTKKIGTPAVLWIFFGCCIAGAG-FTLLLPEVRDR 434
                 **************************9999999966.33444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2777.15
//
Query:       CDO72509.1  [L=753]
Description: hypothetical protein BN946_scf184980.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-207  689.1   0.0   6.1e-207  688.9   0.0    1.0  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase
  ------ inclusion threshold ------
       0.18   10.2   0.0       0.26    9.7   0.0    1.1  1  Dymeclin         Dyggve-Melchior-Clausen syndrome protein


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  688.9   0.0  6.9e-211  6.1e-207       1     586 [.      27     669 ..      27     670 .. 0.93

  Alignments for each domain:
  == domain 1  score: 688.9 bits;  conditional E-value: 6.9e-211
                      S-------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHSSHT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-GCCC CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpllseeelekteklveeflkgeGpkLqerLraekekktsknwledwWedyaYleyrdplvlnsnpfllleddp 94 
                      Lp+LP+P+LedT++ryl++l+ l+++ e+++t+++ve+fl+++Gp++qe+L++++++  + +++e++W++ +Yl++ dp+vl  npf++le+dp
       CDO72509.1  27 LPKLPIPPLEDTCRRYLTALEGLQDPREHAETRRAVEDFLHNDGPRIQEKLKEYAKD--KASYIEEFWYE-SYLSHSDPVVLALNPFFVLENDP 117
                      9**************************************************998888..67*********.*********************** PP

                      CTSTCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--TSS---EEEEEETTEEEEEECECEC CS
  Carn_acyltransf  95 dpkeknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykkedkesrhivVlrkgqfYkvdvledd 188
                      + +++ qql raA+li+s+l f+++lr++ lepd++ +g+pl+m+qy+rlf+t+RiP++   k++     ++esrhivVlr+gqfY++dvl+ +
       CDO72509.1 118 T-PDRGQQLPRAASLIVSSLGFIHDLRAGILEPDTV-RGTPLDMDQYTRLFGTARIPTERGCKMEV----HPESRHIVVLRRGQFYWFDVLDAE 205
                      *.9999999*************************77.59******************944445554....456******************557 PP

                      TTEE--HHHHHHHHHHHHHHHHCCG....----GGGGGGS-HHHHHHHHHHHCC-TCHHHHHHHHHHCSS-EEEE----SS---HCCHHHHHHC CS
  Carn_acyltransf 189 ggrllspaelekqleeIlsdsekees...aeepvgvlTtenRdewakareellksekkNkeslelIesalfvvcLDdespededeeelakqllh 279
                      ++ +l+++e+ ++l++I+ d+++ +    a++++gvl+tenR++w+++r++l+++ k+N+++le+I++alf+vcLDd+spe+  e  l++++l+
       CDO72509.1 206 NRPVLTEREILRNLQAIVGDADQMPIhevAKNSIGVLSTENRKVWSQLRKALIRN-KNNESCLEVIDNALFIVCLDDASPENLAE--LCDNFLC 296
                      7789**************55545554679**********************9985.55*********************877777..******* PP

                      T...........TCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S.......................---- CS
  Carn_acyltransf 280 g...........sgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekn.......................eeks 339
                      g           ++ nRW+DK lq+iv+++G ag+nfEH+++Dg++vlr++ d++t+  +  a+++n                       +   
       CDO72509.1 297 GtydlkggiqvgTCVNRWYDK-LQIIVCADGAAGINFEHTGVDGHTVLRFAADIFTEGLMLLARSINpsaptlfhaplspyaksykpprgK--- 386
                      8889999999*9*********.********************************************9*******99999998777666542... PP

                      S-SSS...............-EEE-----HHHHHHHHHHHHHHHHHHCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS---E CS
  Carn_acyltransf 340 sssees...........lpepeklefkldeelkeaieeaetrldklisdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygklaat 422
                           s            ++p+kle++l +el++ i++aetrl++li ++d+++lefk yGk+fi+++++spDaf+Qma+Q+Ayy lyg++++t
       CDO72509.1 387 -----SgtqtppptyviDTAPKKLEWTLYPELRAGIRFAETRLSDLICQNDCQALEFKTYGKNFITSHGFSPDAFVQMAFQAAYYGLYGRIECT 475
                      .....1333344458998899************************************************************************* PP

                      EEEEE-TTSTT--EEEEE---HHHHHHHHHHHSSCTHCCHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT.--HH........... CS
  Carn_acyltransf 423 yEsastrkFrhGRtEtirsvteeslafvkamdskasdeeklellrkAvkahskltkeaakGkGvdrHLfaLkllakel.eseg........... 504
                      yE+a+t++F hGRtE+ir+v++++++f+k++ s+a +++k++ lrkA++ h++ltk+++kG G+drHL+aL++l++++ e+e+           
       CDO72509.1 476 YEPAMTKAFLHGRTEAIRTVQPHTVDFIKTFFSEAPNAQKIASLRKACEGHVQLTKDCSKGLGQDRHLYALYCLVQRErERESqaaaakeypde 569
                      *******************************99*******************************************9974444789**999999 PP

                      .....................SS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES--SSTT-EEEEEEEETC.EEEEEEETCTTS--HHHHHH CS
  Carn_acyltransf 505 .....................eelpelFkdplykklnnwrLsTSqlsspalkgfGfgpvvpdGyGigYiikddsisfvisskkksetsserfae 577
                                            +lp++F+d+++  ln+ +LsTS++++pal++fGfgpv++dG+GigYiikd+ is++ ssk   + +++rf++
       CDO72509.1 570 degrpasptstassgsnahnkPPLPAIFTDSGWLLLNRSILSTSNCGNPALRLFGFGPVAADGFGIGYIIKDEGISVCASSK---HLQTRRFLD 660
                      9999999999999999999999999********************************************************7...78******* PP

                      HHHHHHHHH CS
  Carn_acyltransf 578 aLeealedi 586
                      +L+ +l d+
       CDO72509.1 661 TLKGYLLDV 669
                      *****9997 PP

>> Dymeclin  Dyggve-Melchior-Clausen syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   2.9e-05      0.26      26      80 ..     245     298 ..     236     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 2.9e-05
    Dymeclin  26 addafWdqllsfslktptsvqdvfalvepaaeilalrnespgnLatLlrkavekl 80 
                 ++ + W+ql ++ ++++++++ ++++ ++a  i  l ++sp+nLa L+  ++  +
  CDO72509.1 245 ENRKVWSQLRKALIRNKNNESCLEVI-DNALFIVCLDDASPENLAELCDNFLCGT 298
                 38899******999999999999998.*********************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5079.16
//
Query:       CDO72510.1  [L=151]
Description: hypothetical protein BN946_scf184980.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1076.04
//
Query:       CDO72511.1  [L=554]
Description: hypothetical protein BN946_scf184980.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.018   14.5   0.3      0.041   13.3   0.3    1.5  1  SKG6             Transmembrane alpha-helix domain
       0.11   12.2   0.0       0.27   11.0   0.0    1.6  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
       0.98    9.9   5.8        1.3    9.4   1.0    2.9  2  Bowman-Birk_leg  Bowman-Birk serine protease inhibitor family


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   6.8e-06     0.041       1      37 [.     222     256 ..     222     257 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.8e-06
        SKG6   1 psdssnsntvaIavaVaVPVaViiivLlailifvrRR 37 
                 ps+  +  ++ Iav +a +V+V +i++l +++  rR+
  CDO72511.1 222 PSK--SALAAQIAVPIAAGVGVALIAILLFYLYQRRK 256
                 566..44555566655555555555555555545655 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.5e-05      0.27      38      69 ..     237     268 ..     209     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
  Phage_holin_2_4  38 vGlavAliGlLvnWyYkreanRRaaaehelre 69 
                       G+ vAli +L+ + Y+r + RR++   ++r 
       CDO72511.1 237 AGVGVALIAILLFYLYQRRKWRRHQHPRDRRT 268
                      5999********************99998886 PP

>> Bowman-Birk_leg  Bowman-Birk serine protease inhibitor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3     0.063   3.8e+02       3      19 ..     131     146 ..     131     146 .. 0.88
   2 ?    9.4   1.0   0.00023       1.3       7      16 ..     545     554 .]     544     554 .] 0.95

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.063
                      SSE.EEESSSSTEEEEC CS
  Bowman-Birk_leg   3 KeCvectrSdPPrcvCs 19 
                      K C  + +S++  c C+
       CDO72511.1 131 KAC-SANSSNYGECTCN 146
                      568.899*********6 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00023
                      EEESSSSTEE CS
  Bowman-Birk_leg   7 ectrSdPPrc 16 
                      +ctrS+PPrc
       CDO72511.1 545 VCTRSSPPRC 554
                      7********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4010.87
//
Query:       CDO72512.1  [L=348]
Description: hypothetical protein BN946_scf184980.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-21   75.1   0.1    8.8e-21   74.7   0.1    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1   4.9e-25   8.8e-21       2     107 ..     147     308 ..     146     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 4.9e-25
                    EEEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB...CHH...................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacin..ddy...................................... 54 
                    +l++++G+pg+s+ ++ +  + ++++     +dv+++D+rG g ++pa +c +  +                                        
     CDO72512.1 147 TLLLNPGGPGGSGTEFIARRGIDISQIvggSYDVLGFDPRGIGATTPAARCFDteS-Qwklwelqrdtrllnltddtvhiarareklltarceeki 241
                    79********99997776666677777************************87652.0577777777778888888999999999*********** PP

                    ..........SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE....C CS
  Abhydrolase_1  55 ..........gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllga....i 107
                              gt  va+d+  i+++lg++k++++G+S+G+ ++ ++aa+yp++V +l+ +g     +
     CDO72512.1 242 ggewgiarfaGTHLVARDMLEIVERLGQQKVHYWGFSYGTVLGQYFAALYPQKVGRLIIDGVfdayS 308
                    **********8888**********************************************9954441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2480.25
//
Query:       CDO72513.1  [L=350]
Description: hypothetical protein BN946_scf184980.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-37  128.2   2.8    5.4e-37  127.4   2.8    1.4  1  ETF        Electron transfer flavoprotein domain
    2.2e-33  114.1   0.5    4.5e-33  113.1   0.5    1.5  1  ETF_alpha  Electron transfer flavoprotein FAD-binding domain
  ------ inclusion threshold ------
       0.16   12.0   3.7       0.27   11.3   3.6    1.4  1  E_Pc_C     Enhancer of Polycomb C-terminus


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   2.8   9.1e-41   5.4e-37       2     178 ..      26     203 ..      25     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 9.1e-41
                 EEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-.CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC.--SEEEEESS CS
         ETF   2 lvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeea.lrealaamGadkvilvddpalagydaeatakalaalikke.dpdlvlagat 98 
                 lvl eh+  g+++  +l+al+aA +l    gg+v+++vvG p +++  +++a + +G+ +v++  ++++a+  +e ++++l +l+ ++  +++v+ +++
  CDO72513.1  26 LVLLEHR-AGVIDSGSLSALTAAQQL----GGQVSGLVVGAPDEVKGvVEKAKKLKGLNTVLHSASEQYAHTIPEVVSPLLEKLLSDNsPYTHVVSAHS 119
                 799***9.9*****************....9*********97776667999*************************************88********* PP

                 CCHHHHHHHHHHHCT-EEEEEESEEEEETCC..EEEEEECCCCTEEEEEE-T..SSSEEEEE-TTSS----S-TT---EEEE-- CS
         ETF  99 aigkqvaprlAalLgvplitdvteleveggk..ltvtRpieggnglaevvea..dlpavltvrpgafepaaimaakkkeveeve 178
                 +  k ++pr+Aa+L++p ++d+t+le +g +   t+tRpi++gn++a+v+ +   +++++tvr++af++ a++++++ e + v+
  CDO72513.1 120 SSAKSILPRVAARLDLPAVSDITSLEHDGSSnaTTFTRPIYAGNAIATVRAPesVRVKFFTVRSTAFKASATDESAQVEDKAVD 203
                 ****************************666*******************997668999**********888887666544444 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.5   7.5e-37   4.5e-33       2      84 .]     226     309 ..     225     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 7.5e-37
                 -TTT-S-EEEE-GGGSSGGGHH.HHHHHHHHHT-EEEE-HHHHTTTSS-CCCB-SSSS-----S-EEEES----HHHHGGGTT- CS
   ETF_alpha   2 dLeeakvvvsgGrGlkskenle.lleelaealgaavgasRavvdagwipeerqvGqtGktvaPklyiavGisGaiqhlaGmkes 84 
                 dL +a++vvsgGr+lk++e+++  le la+ lgaa+gasRa+vdag+++++ qvGqtGk+vaP+lyia+GisGaiqhlaGmk+s
  CDO72513.1 226 DLGSASRVVSGGRALKNAETFKaTLEPLADVLGAAIGASRAAVDAGYADNSLQVGQTGKVVAPELYIAIGISGAIQHLAGMKDS 309
                 7999*****************879**********************************************************97 PP

>> E_Pc_C  Enhancer of Polycomb C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.6   4.6e-05      0.27      57     166 ..      42     146 ..      35     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
      E_Pc_C  57 SAlvtteqllalktkedvvlgigvnGvlsasgvykglhltsttsaalvtssssstlssstllqpssnstsssshsalshkttaaststtqvllgnnirL 155
                 SAl  ++ql  + +   v++   v Gv++ +   kgl    t+  +    s+  +++ +++++p    +  s +s+ +h ++a s+s+  +l+  + rL
  CDO72513.1  42 SALTAAQQLGGQVSGLVVGAPDEVKGVVEKAKKLKGLN---TVLHSA---SEQYAHTIPEVVSPLL-EKLLSDNSPYTHVVSAHSSSAKSILPRVAARL 133
                 89999999999888866777789*******99999997...555222...4445556667777766.56778999************************ PP

      E_Pc_C 156 svpsas..aslna 166
                   p+ s  +sl++
  CDO72513.1 134 DLPAVSdiTSLEH 146
                 **99886633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2444.06
//
Query:       CDO72514.1  [L=429]
Description: hypothetical protein BN946_scf184980.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-13   49.6   0.0    2.3e-10   40.3   0.0    2.2  2  FAD_binding_3   FAD binding domain
    0.00012   22.3   0.2    0.00034   20.8   0.2    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
       0.02   14.5   1.6      0.045   13.3   1.6    1.5  1  DAO             FAD dependent oxidoreductase
      0.046   13.0   0.1      0.068   12.4   0.1    1.2  1  Thi4            Thi4 family
      0.057   12.3   0.4        1.1    8.0   0.1    2.1  2  Trp_halogenase  Tryptophan halogenase
      0.082   12.1   0.0       0.24   10.6   0.0    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   7.5e-14   2.3e-10       3     172 ..       7     182 ..       5     194 .. 0.72
   2 !    7.1   0.0   0.00091       2.7     283     347 ..     313     370 ..     308     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 7.5e-14
                    EEEEE--SHHHHHHHHHHHHT.THHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHH..HHHSEECCCCEEEEEEECCCCCEEEEEHHCHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLsea.GvrvvlvekrsttvvlpradglnqrtmellrqlGledri..laegapnelmgealynelsdtpkaradleless 95 
                     V+I G+G  Gl+la  Ls++  +rv + e  ++  + + + ++ qrt e+l+ lGl +++  +a+++p +  g  +  + sd p+   +   +++
     CDO72514.1   7 RVAICGGGIGGLTLAVALSRYpDIRVDVYEAAAQFKEIGAGVMMWQRTWEILKLLGLGKEFgdIAHASPDSSPGVGFDYRKSDQPEEGFRFY-LFQ 101
                    79******************9448999999999999999*********************93334555555555544444345566666666.555 PP

                    ST-.CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEE....ECCTTEEEEEEEEEEEE--GTT-HHHHHH CS
  FAD_binding_3  96 per.vtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevr....dketgeeetvrakYlvGaDGgrStvrktl 172
                     ++    +   +++ +Lv+h+ +  + +++   + +  q++++ + +         ++   t +++ lvG+DG +S +rk++
     CDO72514.1 102 VPYgCIRFHRAQFLDVLVDHLPAGVAHFGRRLTFYNTAQTTSQTSGRRDseitLYFADG-ATATCDLLVGCDGIKSVIRKKM 182
                    55505568999*********765557776666655444444443333332221333344.4899***************986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00091
                    ETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTT.SS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 283 kgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkG.eAkeelLdtYeeerravaqavvd 347
                    +gr+ l GDA        G G   ai+Da+ La  L++  +  +  ++ L +Ye+ r+++a+ +++
     CDO72514.1 313 QGRIALLGDA--------GAGAGQAIEDAFILAEILGHPSTTlSTLSQTLSAYEAVRLPMANHILK 370
                    5666666665........99999***************98752466899************98875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   1.1e-07   0.00034       1      29 [.      10      39 ..      10      41 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrd 29
                   I G+G++Gl++A +L+++ +++v+++e++ 
     CDO72514.1 10 ICGGGIGGLTLAVALSRYpDIRVDVYEAAA 39
                   67***************99********986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.6   1.5e-05     0.045       1      32 [.       7      41 ..       7      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSST CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdia 32
                +v+i GGGi Gl+ A +L+r +   V ++e++ ++
  CDO72514.1  7 RVAICGGGIGGLTLAVALSRYPdirVDVYEAAAQF 41
                59*****************998899*****99665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.3e-05     0.068      18      52 ..       6      40 ..       1      54 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvs 52
                  v+i G+G  GLt a  l++ pd++v + e+   
  CDO72514.1  6 FRVAICGGGIGGLTLAVALSRYPDIRVDVYEAAAQ 40
                5699*************************998654 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00036       1.1       1      63 [.       7      67 ..       7     127 .. 0.72
   2 ?    2.5   0.0     0.018        53     189     220 ..     154     185 ..     130     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00036
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-.SSS---SS-EE--THHHHTHHHHT--HHHH CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlves.eeigtvgvGeatipsirkllrlLgideeef 63
                    ++ i GGG+ G + A al+++   +++v + e+ +++  +g G      + ++l+lLg+  e f
      CDO72514.1  7 RVAICGGGIGGLTLAVALSRYP--DIRVDVYEAaAQFKEIGAGVMMWQRTWEILKLLGLGKE-F 67
                    689******************9..67888888625788888888888888888888888743.5 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.018
                     EEEETTS-EEE-SEEEE-SGGG-IIIIIIT-- CS
  Trp_halogenase 189 slrledgreveadlfiDcsGfrgllieqaLkt 220
                      l  +dg +   dl + c G ++ + ++ L+ 
      CDO72514.1 154 TLYFADGATATCDLLVGCDGIKSVIRKKMLED 185
                     57889*******************99998875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.9e-05      0.24       2      31 ..       7      37 ..       6      97 .. 0.79
   2 ?   -2.6   0.0      0.84   2.5e+03     214     239 ..     150     176 ..     135     186 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.9e-05
                 SEEEE--SHHHHHHHHHHHHH.TS-EEEEET CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqa.gakvtlvel 31
                 +v++ GgG++Gl++a  l+++  ++v ++e+
   CDO72514.1  7 RVAICGGGIGGLTLAVALSRYpDIRVDVYEA 37
                 7888888888888888888855777777763 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.84
                  E.EEEEEETTSCEEEESEEEE-S-EEE CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 214 e.klevvledgeeidadlvvvavGvrp 239
                  + ++++   dg +  +dl+v + G++ 
   CDO72514.1 150 DsEITLYFADGATATCDLLVGCDGIKS 176
                  246778899999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2744.31
//
Query:       CDO72515.1  [L=1259]
Description: hypothetical protein BN946_scf184980.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-58  196.5   2.7    5.1e-55  186.3   0.5    3.5  3  NUC173     NUC173 domain
    6.5e-05   22.8   0.2       0.83   10.1   0.1    3.8  4  HEAT       HEAT repeat
    0.00042   19.0   0.1        2.3    6.7   0.1    3.8  3  Adaptin_N  Adaptin N terminal region
  ------ inclusion threshold ------
      0.036   13.2   0.1      0.036   13.2   0.1    5.7  5  MMS19_C    RNAPII transcription regulator C-terminal
      0.048   14.2   1.8         70    4.1   0.0    5.3  6  HEAT_EZ    HEAT-like repeat


Domain annotation for each model (and alignments):
>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.29   1.1e+03     141     174 ..     323     357 ..     303     374 .. 0.56
   2 !  186.3   0.5   1.4e-58   5.1e-55       6     204 .]     394     602 ..     389     602 .. 0.93
   3 !    7.8   0.0   0.00067       2.4       3      79 ..     919     996 ..     917    1008 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.29
      NUC173 141 sveakiletlveqiWslLPsfcelptDlkesf.kk 174
                 +++a+ + t  +++W+ L s  e+p  ++ +   +
  CDO72515.1 323 HTNAEECATHLTKVWKALWSLLESPDGITRKSaAQ 357
                 34455555566666666666666665554442222 PP

  == domain 2  score: 186.3 bits;  conditional E-value: 1.4e-58
      NUC173   6 leslL.slkyqaawkevlevlsalfeklgkrs....spl......lkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnleeeeeek 93 
                 ++  L sl y++a++evl v+s+l+e+l+ r     + +      l ++++++++ r +++fe+k+++d+++++a++ +Gp+v+L++lPLnle  + ++
  CDO72515.1 394 TTAALdSLAYARAIPEVLLVISSLIENLRFRNgsrkT-TtaaeqlLLPLITKIADFRIQKTFEHKEAVDATLSTAMKILGPQVILRALPLNLETVDRQA 491
                 44455599********************888866541.1556666************************************************88888* PP

      NUC173  94 lsegraWLLPlLrdnvrnaeLafFveellplaealeqkakeaeeakksveakiletlveqiWslLPsfcelptDlkesf.kklaklLsnaLyeqpeLrl 191
                 ++e+ra+LLPlL  + + + La+Fv++++pl+e++++ + +ae++++++eak++++lveqiW  LP++c  + Dlkes+ +++++lLs++Ly+qp+Lr+
  CDO72515.1 492 GREPRAFLLPLL-AQPHPSPLAHFVSYFVPLTERMFDLQTTAETEGRHSEAKVWSVLVEQIWMGLPGYCWGTIDLKESLtQQFSQLLSQLLYNQPNLRP 589
                 ************.99************************************************************************************ PP

      NUC173 192 tickaLrkLvesn 204
                 ++++aL+ +v+sn
  CDO72515.1 590 AVLRALKVMVDSN 602
                 **********997 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00067
      NUC173   3 lkaleslLslkyqaawkevlevlsalfeklgkrs.spllkkilktlgelreseefelkkeadevigaairamGpevvL 79 
                 +++l  +L    ++ +k vl +++ +++++     +p+lk+++  l  + +++++++k ++ +++   ir  G e v 
  CDO72515.1 919 FTTLLVFLGSANREIVKSVLGFIKLAIHTMPADLlRPHLKDLVPALLRWSHDHKNHFKAKVRHIFERMIRRFGWEDVY 996
                 5566667777778999**************8888899****************99******************99875 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0009       3.2       5      28 ..     152     175 ..     151     177 .. 0.83
   2 !   10.1   0.1   0.00023      0.83       4      30 ..     339     365 ..     337     366 .. 0.92
   3 ?   -3.0   0.0       3.7   1.3e+04      12      29 ..     828     845 ..     824     846 .. 0.84
   4 ?   -3.1   0.0       4.1   1.5e+04       1      11 [.     960     970 ..     960     973 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0009
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 +++l  Dp p+VR+ Aa+ + +++
  CDO72515.1 152 IVQLTLDPRPKVRKKAAEVIKDVL 175
                 567778************998765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00023
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 +l++ll++p+   R++Aa+aL  l+++
  CDO72515.1 339 ALWSLLESPDGITRKSAAQALSSLCKC 365
                 58899********************97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.7
                 SSHHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgalae 29 
                 ps + R aA+  ++a+ +
  CDO72515.1 828 PSEKARNAAFDLIVAMGK 845
                 78889*****99999876 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4.1
                 HHHHHHHHHT- CS
        HEAT   1 llPlllkllsD 11 
                 l+P+ll++ +D
  CDO72515.1 960 LVPALLRWSHD 970
                 79*****9988 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1   0.00064       2.3     113     296 ..     146     364 ..     132     381 .. 0.72
   2 ?    2.2   0.0     0.014        51     258     298 ..     563     602 ..     520     619 .. 0.88
   3 !    4.6   0.0    0.0027       9.6     353     410 ..     888     950 ..     862     972 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00064
                 HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCT....T-SSH.............HHHHHHHHHHHHHHCCCCCCC..HHHH CS
   Adaptin_N 113 edlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikell....sdkdp.............gvvlaAvalleeikkndrlll..kllp 191
                 ++ + +i +l  d++p vrkkAa  i +++++ p  l k  ++e++ e +    ++ +                  aA++ll+++ ++   +l  + l+
  CDO72515.1 146 RQAFMTIVQLTLDPRPKVRKKAAEVIKDVLSAPPLPLAKHpYAEKVAEWVkaalAEISAgglpkfkgkkadtEGSEAAIHLLTFL-RPVLPTLpaDSLS 243
                 56667788888899*********99999999955555555555554444411115555577778888888887778888888888.5544444556666 PP

                 HHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH.....HHHHHHHCGGCG...........CSSCHHHHHHHHHCCHCCCCST...HHHCCHHCHH CS
   Adaptin_N 192 klvrrLcnllteldpwlqvkiiklltrlarqepeersk...kellesllnllq...........ssnnaVlletvnlivelapkne...livlavnaLv 273
                 ++++ L  l    +p+l     ++l++l     +++ +   + + e l+  l+           s+ + Vl +t  ++++   + e    ++++ +aL 
  CDO72515.1 244 SITSSLLILPRLGNPYLSQSAYSILSDLLTLSMDDPTVdlqSHMSELLKVILSsppiktdaalnSAWANVLGNTMLAYHHTNAE-EcatHLTKVWKALW 341
                 777776644477889999888888888888888888665533444444444449999999999788888999999999974433.34668899****** PP

                 HHHHSSCCTCHHHHHCHHHHHHH CS
   Adaptin_N 274 rllsskdenlryvaLrtllkivk 296
                 +ll+s+d  +r  a ++l++++k
  CDO72515.1 342 SLLESPDGITRKSAAQALSSLCK 364
                 *******999*999999999997 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.014
                 CCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N 258 lapknelivlavnaLvrllsskdenlryvaLrtllkivkke 298
                 ++ k +l +++ + L +ll ++++ lr ++Lr+l  +v ++
  CDO72515.1 563 IDLKESLTQQFSQLLSQLLYNQPN-LRPAVLRALKVMVDSN 602
                 677788999*************99.**********999887 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0027
                 XHHHHHHHHHHHHHHHHHS.....CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTT CS
   Adaptin_N 353 dedfksklvkaIgrlaekf.....atdaewvldvllellslsgesvkdeivevirdliqkvpe 410
                 ++ + s++v+aI+rl   f      ++++ + ++ll +l +++  ++++++ +i+  i++ p+
  CDO72515.1 888 TPHMISATVTAIARLVFEFresisSQMQSEIFTTLLVFLGSANREIVKSVLGFIKLAIHTMPA 950
                 45578999***********9999999********************************99986 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.5     0.024        86     350     378 ..      78     106 ..       2     132 .. 0.77
   2 ?   -0.4   0.3      0.14   4.9e+02     187     236 ..     326     376 ..     260     402 .. 0.63
   3 ?   -0.7   0.0      0.17   5.9e+02     275     311 ..     568     603 ..     565     641 .. 0.68
   4 ?    1.4   0.2     0.038   1.4e+02     118     221 ..     661     763 ..     657     765 .. 0.78
   5 ?   13.2   0.1     1e-05     0.036     347     422 ..     890     966 ..     874     967 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.024
     MMS19_C 350 enyLvALshllkhvPkslllpeLptLlPl 378
                 +++L+ L+ + + vP+ ++ + L+tLl+l
  CDO72515.1  78 PAVLYLLAAVASFVPHPVIRTNLSTLLSL 106
                 67778888888888888888888888776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.14
     MMS19_C 187 lpdlsellnelle..llaseaespflrlaylrllallvNKflkdedlselld 236
                  +++++ l+++ +  +++ e+ + ++r+++ ++l++l  K+ + + ++++++
  CDO72515.1 326 AEECATHLTKVWKalWSLLESPDGITRKSAAQALSSLC-KCFTPATIKAAVK 376
                 24455555555558888888888888888888888886.5555555555544 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.17
     MMS19_C 275 platelldkLlelLsedaelgqlvakafgvlvsddev 311
                 +l++++ + L +lL ++++l+ +v +a++v v   +v
  CDO72515.1 568 SLTQQFSQLLSQLLYNQPNLRPAVLRALKVMVDS-NV 603
                 4567777777777779999999999999999844.54 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.038
     MMS19_C 118 evlgriinlivrslssskqqevleevvalfltgdaskkfeplsesas.esqkqliilftailaalrkevklpdlsellnellellaseaespflrlayl 215
                 +v+g++i++ ++   +++  + ++++valf+++ a++  + +++ ++ + +++++++ + +l  + +  + +d  el++  l++ + e++++  ++   
  CDO72515.1 661 HVVGDVISAWIAIAYPKEVTQAYKKLVALFKQNLAKA--QNFHQPNKnQASDSMTVVTQDLLLLILPYLSSEDATELFQLYLRTDVLESRDNGVQKRGY 757
                 5788888888888889999999999999999886666..777777664666666689999999999999999999999999987777777777777777 PP

     MMS19_C 216 rllall 221
                 + la l
  CDO72515.1 758 KTLARL 763
                 777666 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 1e-05
     MMS19_C 347 etkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksile.espslvsehlssLvprLLk 422
                 +  ++  +A++ l+    +s+  +  ++++ +Ll  L   ++e+ +s+L  +k ++    ++l+ +hl++Lvp LL+
  CDO72515.1 890 HMISATVTAIARLVFEFRESISSQMQSEIFTTLLVFLGSANREIVKSVLGFIKLAIHtMPADLLRPHLKDLVPALLR 966
                 5555666677777777777777777789*****************************55599*************97 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.39   1.4e+03      35      49 ..     154     168 ..     143     171 .. 0.83
   2 ?   -3.8   0.0         5   1.8e+04      21      48 ..     282     304 ..     281     305 .. 0.81
   3 ?    4.1   0.0      0.02        70      22      55 .]     329     362 ..     309     362 .. 0.74
   4 ?   -1.8   0.0       1.4     5e+03       1      12 [.     585     596 ..     568     615 .. 0.62
   5 ?   -2.0   0.0       1.6   5.8e+03       8      41 ..     896     930 ..     894     939 .. 0.73
   6 ?    3.3   0.0     0.034   1.2e+02      19      34 ..     950     965 ..     943     969 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.39
     HEAT_EZ  35 alLnddsdeVRaaAa 49 
                 +l  d+ ++VR++Aa
  CDO72515.1 154 QLTLDPRPKVRKKAA 168
                 566899*******98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5
     HEAT_EZ  21 llqplvpeilpaLlalLnddsdeVRaaA 48 
                 +lq + +e+l+  l     +s+++++ A
  CDO72515.1 282 DLQSHMSELLKVIL-----SSPPIKTDA 304
                 67888999999999.....999888776 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.02
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++++++++ +aL +lL++++  +R+ Aa aL+ l
  CDO72515.1 329 CATHLTKVWKALWSLLESPDGITRKSAAQALSSL 362
                 66677777788889999988899********986 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.4
     HEAT_EZ   1 wrvRraAawaLG 12 
                 +++R a+++aL 
  CDO72515.1 585 PNLRPAVLRALK 596
                 345555666663 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.6
     HEAT_EZ   8 awaLGrlaggepellqp.lvpeilpaLlalLndds 41 
                 + a++rl ++ +e ++  +++ei   Ll +L + +
  CDO72515.1 896 VTAIARLVFEFRESISSqMQSEIFTTLLVFLGSAN 930
                 56788877777777655599999999998887655 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.034
     HEAT_EZ  19 pellqplvpeilpaLl 34 
                 ++ll+p++++++paLl
  CDO72515.1 950 ADLLRPHLKDLVPALL 965
                 689************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 7799.60
//
Query:       CDO72516.1  [L=465]
Description: hypothetical protein BN946_scf184980.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-08   31.9   0.0    2.6e-07   30.3   0.0    1.8  2  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
      0.075   12.2   0.8       0.19   10.8   0.0    2.0  2  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera
       0.14   12.0   0.8       0.26   11.2   0.1    1.7  2  pPIWI_RE_Z       pPIWI RE three-gene island domain Z


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   4.3e-11   2.6e-07      55     124 ..      13      88 ..       1     106 [. 0.86
   2 ?   -3.0   0.0      0.83     5e+03      56      73 ..     180     205 ..     166     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 4.3e-11
  Acyltransferase  55 i.pllgflmrllgfifidR.....ksnaraagsleniselleegklvviFPEGtrsregellpfkkGlvrlaakak 124
                         ++++l++++g+++i+R      +  +  ++++++ e+le g+ v++FPEG       + p k+Gl+rl+ +a 
       CDO72516.1  13 RkTITSWLIESAGTVPIKRrkdfaHDTVDNSNAMQYLMEALELGDAVCLFPEGMSRYHPTIAPLKTGLARLVSDAL 88 
                      34799***************9999888888999********************99999999**********99885 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.83
  Acyltransferase  56 pllgflmrllgfifidR........k 73 
                        lg+ m+l++++ + R         
       CDO72516.1 180 APLGTSMSLGDYVRVVRtfleafklA 205
                      66788888888888888555554441 PP

>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.2e-05      0.19     164     262 ..      29     132 ..      22     165 .. 0.72
   2 ?   -3.1   0.4      0.59   3.5e+03      14      45 ..     325     356 ..     318     363 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.2e-05
  Lip_A_acyltrans 164 islRerfggkllprknaikelikalrkgevvvllpDqdlgrkdsvfvpf...Fgepaatttspaklalktkaavipvaiirkkdg...skytvs 251
                      i++R+ f  + ++ +na++ l++al  g +v+l p+  + r +   +p+   +++    + s ++     + +v+++ i +  +    s   v+
       CDO72516.1  29 IKRRKDFAHDTVDNSNAMQYLMEALELGDAVCLFPEG-MSRYHPTIAPLktgLARLVSDALSRNRHNPDFEVDVLTCSITYMHRQhfrSDVLVT 121
                      789********************************85.55555677777322333333344444555555588999999888888666667788 PP

  Lip_A_acyltrans 252 vhPaldlsste 262
                      +hP++++++++
       CDO72516.1 122 FHPPMKFTPKN 132
                      89999998887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.59
  Lip_A_acyltrans  14 wlvwlgiavllllallPesvlrkilkglgrla 45 
                      ++ ++ + +++l+a +P  +l   l   + ++
       CDO72516.1 325 FVSFVCVYFVMLVATFPVALLTATLVPAAMWM 356
                      34488889999999999988877776666665 PP

>> pPIWI_RE_Z  pPIWI RE three-gene island domain Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.2     7e+03      72     101 ..     361     389 ..     357     402 .. 0.63
   2 ?   11.2   0.1   4.3e-05      0.26      38      83 ..     416     460 ..     415     464 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.2
  pPIWI_RE_Z  72 weealeaYrelperlrgYeidedgelarrr 101
                 +e+a++a+r l++ lr   i e+  l+r r
  CDO72516.1 361 LEDAVAAFRALNSLLRLLWIGEPA-LRRMR 389
                 567788888877777777777776.33333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.3e-05
  pPIWI_RE_Z  38 YpfaaargapldeeqrqalanaRhllwelrsrraweealeaYrelp 83 
                 Y fa++ g ++   + ++ + a++ + + r++r+w+e+l+ Y++++
  CDO72516.1 416 Y-FAQVGGREKGRVRGRWASKAKYFSVRRRRKRDWNETLRLYDKVD 460
                 6.9999999999*******************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3127.00
//
Query:       CDO72517.1  [L=200]
Description: hypothetical protein BN946_scf184980.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.038   13.9   3.0      0.071   13.0   3.0    1.5  1  Amastin          Amastin surface glycoprotein
       0.05   13.2   9.4       0.07   12.7   9.4    1.2  1  DUF998           Protein of unknown function (DUF998)
       0.15   11.7   2.0       0.24   11.0   2.0    1.4  1  Wzy_C            O-Antigen ligase
        0.9    9.1   5.0       0.62    9.7   3.1    1.6  1  SUR7             SUR7/PalI family
        1.8    8.6   8.2        2.8    8.0   8.2    1.2  1  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.0     2e-05     0.071      74     150 ..      96     170 ..      69     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
     Amastin  74 lvlaaalllsvllllccsslkwvclllnivsvvtllivwalmvavyykrfCdalksttakygaGFgLlvvawlldli 150
                 +v ++a++++v+   + + + + + +l+++ v+ ++iv  +++++y+++  +++     + g G++L  ++w++ ++
  CDO72517.1  96 VVACLAIMFGVTTHSRRRRIWKSVSVLVALHVLSQIIVFGVVTHLYRTDAFPTFAHA--RPGLGYVLNTLSWVFGIL 170
                 57788888999999888999999999*********************9988766554..58***********98775 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   9.4   1.9e-05      0.07      44     137 ..      92     194 ..      82     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
      DUF998  44 aglvllgllvlalavgllraargragragrlllavaglg.lvlag....vfptdpgggsp...slsglvHglasavaflalavavllla..saarrraw 132
                  g+ ++++l++ ++v + + +r+r+++ +++l+a+ +l+  ++ g    ++ td  ++++   +  g+v +  s+v++++++++v++ +  +++++r++
  CDO72517.1  92 IGFAVVACLAIMFGVTTHS-RRRRIWKSVSVLVALHVLSqIIVFGvvthLYRTDAFPTFAharPGLGYVLNTLSWVFGILVTAGVVTTGisAERGHRWA 189
                 5788999999999986654.**************88887655555444477777777777***9**********************9999666666666 PP

      DUF998 133 allrl 137
                 a  r+
  CDO72517.1 190 AGNRA 194
                 65554 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   6.7e-05      0.24      20      78 ..      96     151 ..      77     196 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.7e-05
       Wzy_C  20 igllvalivlliifykrripfllllg.ilvgvilliilfvlstnletlknitkafgkldk 78 
                 +++++a+++++  + +rr+ ++ +++ +++ v+  ii+f + t l++      af + ++
  CDO72517.1  96 VVACLAIMFGVTTHSRRRRIWKSVSVlVALHVLSQIIVFGVVTHLYRTD----AFPTFAH 151
                 3347788888888888888888888878888888888888888888665....4555555 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.1   0.00017      0.62     124     174 ..      93     142 ..      80     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00017
        SUR7 124 vlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfv 174
                  + +++ + +++++  +++ +r++   +++l  l +l+ ++ ++++t l+ 
  CDO72517.1  93 GFAVVACLAIMFGVT-THSRRRRIWKSVSVLVALHVLSQIIVFGVVTHLYR 142
                 455555555555553.3346666999999********************97 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.2   0.00078       2.8      51     134 ..      85     176 ..      77     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00078
  Polysacc_synt_C  51 plfgivGaaiatvlallvvavlnlyalrrllgiklellrrllkpllaalvmgivvylllllllglllla..........alalllavlvgalvY 134
                       +fg +G+ +a v++l++++ +  +  rr++  ++     +  ++l+ +++++vv++l++     ++ +          +l+ ++++lv a v 
       CDO72517.1  85 SYFGELGIGFAVVACLAIMFGVTTHSRRRRIWKSV--SVLVALHVLSQIIVFGVVTHLYRTDAFPTFAHarpglgyvlnTLSWVFGILVTAGVV 176
                      57899**************************9999..55556899999**99999988888877777778899998876556677766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1465.61
//
Query:       CDO72518.1  [L=201]
Description: hypothetical protein BN946_scf184983.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1616.18
//
Query:       CDO72519.1  [L=197]
Description: hypothetical protein BN946_scf184983.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1587.90
//
Query:       CDO72520.1  [L=233]
Description: hypothetical protein BN946_scf184983.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   51.4   0.7    2.4e-12   47.1   0.1    2.7  3  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    3.2e-11   43.5   2.7    4.1e-11   43.2   0.3    2.2  3  PEMT        Phospholipid methyltransferase
    2.5e-06   26.5   0.6    3.4e-06   26.1   0.6    1.2  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.33     2e+03      44      62 ..      46      66 ..       5      81 .. 0.61
   2 !   47.1   0.1   4.1e-16   2.4e-12       3      62 ..     103     161 ..     100     172 .. 0.86
   3 ?    1.1   0.0     0.091   5.4e+02      74      93 ..     191     210 ..     180     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
        ICMT 44 lrHPnYllf..vilelatllL 62
                +r   Yl++  v++ +a  lL
  CDO72520.1 46 VRFLAYLVWlaVLPTIASTLL 66
                344556665223345544444 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 4.1e-16
        ICMT   3 llvllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllL 62 
                 +l +++  +rl+  + lG+ +t  v+++++h +v +g+y+y+rHP+Y++ vil l++  L
  CDO72520.1 103 ILTIAGGSFRLWSYRVLGDLFTYEVVLKENHAIVSNGPYAYVRHPSYTG-VILMLVGEHL 161
                 45789999*****************************************.5555554444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.091
        ICMT  74 lalvalllfvRikeEekaLa 93 
                  ++ a+ l+ R   E+k+L+
  CDO72520.1 191 ALFGAISLYRRCAVEDKQLQ 210
                 4567899**********997 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.4   8.3e+03      76      90 ..      53      67 ..      42      72 .. 0.53
   2 !   43.2   0.3   6.8e-15   4.1e-11       2      69 ..      97     162 ..      96     172 .. 0.93
   3 ?   -0.9   0.0      0.35   2.1e+03      78     104 ..     190     215 ..     183     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
        PEMT 76 lllallvllvylial 90
                ++la+l++++  ++l
  CDO72520.1 53 VWLAVLPTIASTLLL 67
                445555555544444 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 6.8e-15
        PEMT   2 rlilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLi 69 
                 r++lG++l ++g  ++l+s++ lg+  t+     l++++++v++G+Y y+++P y+g++l+++G  L+
  CDO72520.1  97 RFLLGTILTIAGGSFRLWSYRVLGDLFTYEV--VLKENHAIVSNGPYAYVRHPSYTGVILMLVGEHLM 162
                 6899*************************55..56999**************************9998 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.35
        PEMT  78 lallvllvylialkfvEephlakiYgk 104
                 +al+ ++  +  +  vE++ l++++g+
  CDO72520.1 190 IALFGAISLYRRCA-VEDKQLQERFGD 215
                 45555555555555.999999999985 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.6   5.7e-10   3.4e-06     346     431 ..     130     232 ..     115     233 .] 0.84

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.7e-10
  ERG4_ERG24 346 ktGskLlvsGWyglarkinYlgDwlqslswsLatgfq................svlpyfyv.lyFlvlLvhRelRDeekCkkkYGedweeYkkkvpyki 427
                 k+ + ++ +G y+++r++ Y+g +l+ +   L+   +                +v+++ ++ l+ ++ L  R + ++++ ++++G+ w eY  +v++k+
  CDO72520.1 130 KENHAIVSNGPYAYVRHPSYTGVILMLVGEHLMQFGDagyvpycgirhtpfapIVYSWPFIaLFGAISLYRRCAVEDKQLQERFGDGWKEYAARVRWKL 228
                 556678899***************99887777644446888999999****999999966515667888888899999********************* PP

  ERG4_ERG24 428 ipyv 431
                  pyv
  CDO72520.1 229 FPYV 232
                 ***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1935.20
//
Query:       CDO72521.1  [L=387]
Description: hypothetical protein BN946_scf184983.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3043.12
//
Query:       CDO72522.1  [L=367]
Description: hypothetical protein BN946_scf184983.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-10   40.9   2.0    4.6e-10   40.5   2.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00016   21.4   0.0    0.00038   20.2   0.0    1.6  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   2.0   5.1e-14   4.6e-10       1     217 [.      31     355 ..      31     358 .. 0.56

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 5.1e-14
                    EEEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTS.TS-...............GGCS--HHH...CHHH.HHHHCCTT.............. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.vhvlapDlpGh.Grs...............dpppldled...ladl.aalldelaa............. 62 
                    ++l+HG g +++++   +L++++a+   + l + ++ + G s               +++p++l++   + ++ ++ +                  
     CDO72522.1  31 IVLIHGWGWHSGVF--KRLLPFAAQNnTRLLLVNRRDYpG-SkpytpeerkhfacvaEGAPDSLQAkedAKAVmRDRA----Relfdflvdyvrre 119
                    8*****77444444..466555555554449*******88.2233334444444444555555544333222222222....12222444466667 PP

                    ........TTSEEEEEETCH.HHHHHHHHHCC.............EE.EEES-..........----TTTS----TTHHHHHHTT-CCCCHCCH.. CS
  Abhydrolase_6  63 .......gggpvvlvGHSlG.Galalaaapla...........lvvg.vlldp........pptalpagllaaalelllallallrllawlsre.. 128
                             g +v+vG+SlG +++ +++a++             v++ vl d+        p   +p+++ + + e l    +++r++ w++++  
     CDO72522.1 120 kvpqangKEGGIVIVGWSLGsTWITSLLASVDqfpeddvqlskYVRRvVLFDAsficygytP---PPDSYEPLYDESLSDSERVARFAVWVTGYya 212
                    778888888999********7789999666669*********95455699999766655542...4444455555555555555555444433332 PP

                    .............S-HSCCCCHHH....C..CCCHCHCCCGHH..................................HHCCHHCHTTCCHHTT-TT CS
  Abhydrolase_6 129 .............plprlfladed....a..daawrarlarla..................................allaglgllpaaawadlpv 171
                                 + +  + ++++    +  +                                              +l  +  + a++w+d+ v
     CDO72522.1 213 hgdvwtegdkaleY-RNALPDPPPtmtrMtpQDL--------VettcgppqepggsepvlaqvgvrqggwlamkdgaFYLREPQVHGASNWTDVEV 299
                    33333333366641.2244444443222122111........122223334555566666666666666666655445555555777999999999 PP

                    GCEEECTT-C..........HHHHCHHCCCHSTTEEET....CE...SSS-HHHHSHHHH CS
  Abhydrolase_6 172 pllvlggeDp..........lvprllerllaqagarlp....vvlpgaGHlphleepdev 217
                      l+ g  D+          l++r l+++   +g+r+     v + ga H+ + + p+++
     CDO72522.1 300 VALW-G--DRsiwempwgtmLLQRELDEAKK-EGKRVRevkaVRFNGANHFAQWDLPEKT 355
                    9944.3..44445555566688888888888.66666333367777****9998888765 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.2e-08   0.00038       2     143 ..      30     222 ..      29     234 .. 0.83
   2 ?   -2.6   0.0      0.39   3.5e+03     238     255 ..     333     350 ..     320     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.2e-08
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH...........................SHHHHHHHHH..HHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddy...........................gtasvaddld..rild 68 
                    ++v++hG++  s+v+ +  l p  a++  +++l++ r ++ S+p   +  +++                            ++ + d+++  ++ +
     CDO72522.1  30 TIVLIHGWGWHSGVFKR--LLPFAAQNNTRLLLVNRRDYPGSKPYTPEERKHFacvaegapdslqakedakavmrdrareLFDFLVDYVRreKVPQ 123
                    69***************..**************************987665556677777777777777777777777767777999999888888 PP

                    HCTTSSEE.EEEETHHHHHHHHHHHHH..........GGGEEEEEEESE.............CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHH CS
  Abhydrolase_1  69 algddklt.lvGhSmGGmialayaaey..........perVkalvllga.............idpaaslieaqrqqaksfpdffdgyaadcarnpa 140
                    a g +  + +vG+S+G++  + ++a             ++V+++vl +a              +p ++ +  +   +++f  +  gy+a + ++++
     CDO72522.1 124 ANGKEGGIvIVGWSLGSTWITSLLASVdqfpeddvqlSKYVRRVVLFDAsficygytpppdsYEPLYDESLSDSERVARFAVWVTGYYAHGDVWTE 219
                    888888777*********999998888899999999999999999999999999988888777777778888888888888888888888877777 PP

                    HHH CS
  Abhydrolase_1 141 gpl 143
                    g++
     CDO72522.1 220 GDK 222
                    765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.39
                    TSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 238 pkkrlvvisdagHlafle 255
                    ++++ v++ +a H+a+++
     CDO72522.1 333 REVKAVRFNGANHFAQWD 350
                    557789999*****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2852.80
//
Query:       CDO72523.1  [L=341]
Description: hypothetical protein BN946_scf184983.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-71  240.5   0.0    2.5e-71  240.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.0   1.4e-75   2.5e-71       1     291 [.      19     330 ..      19     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 1.4e-75
                   .EEEE-SSS-ST.....TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.................--SSST CS
  Aldo_ket_red   1 elglGtwqlgsk....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.................dlrdae 76 
                   +++lG +++g+     ++ ++eea++ ++ a+e+Gi++fDtA+vY +g se++lG+a+kk + +ree++i tK+                 ++    
    CDO72523.1  19 KIILGCMSYGDSkwadWVLDEEEAIKHIKFAYEHGITTFDTANVYSNGLSEIILGNAIKKLSLPREELVIMTKLyapvasdtgintigknpQDLGII 115
                   69********99************************************************************************9998885444444 PP

                   TSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEE...S--HHHHHHH.HHTTT--EEEEE-B-BTT-H CS
  Aldo_ket_red  77 iksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvS...nfsveqleka.kkkkkvkivavqveynllre 169
                   ++ gl++++i  s+++sl rL++dy+D+l++Hr d+++p iee+++al+++vk+G +r+iG S    ++  q++++  +++ +++++ q++y+ll +
    CDO72523.1 116 NQHGLNRKHIFDSVKASLNRLQLDYIDVLQCHRFDYNTP-IEETMQALHDVVKAGYVRYIGMSscyAYQFHQMQHYaITHNLTPFISMQNHYSLLYR 211
                   56688999*******************************.***********************655566666776699******************* PP

                   HHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------....TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE CS
  Aldo_ket_red 170 leeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd....ertsknldaaeelselakehgvslaqlalryalsqpavgivip 262
                   +ee+++++++k  gv+ i++spl++G+lt+  + e++  +++             +++   + +++++e+a+++gvs+a ++l++++s+p+v+ +i+
    CDO72523.1 212 EEEREMFPTLKLFGVGSIPWSPLARGMLTRPLTAESKRAKTD-------AsltyYKNDASGEIIKRVEEIANKKGVSMARVSLAWIMSKPGVTAPII 301
                   *****************************7777555544322.......122348899999************************************ PP

                   --SSHHHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 263 gasnieqlednldalelklseeevaelde 291
                   g+++++ led+l+al+++l+e+e+++l+e
    CDO72523.1 302 GTTSLQNLEDILGALDVTLTEDEIKYLEE 330
                   *************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2852.89
//
Query:       CDO72524.1  [L=952]
Description: hypothetical protein BN946_scf184983.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   50.9   0.1    2.6e-13   50.1   0.1    1.4  1  DUF659    Protein of unknown function (DUF 659)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   1.4e-17   2.6e-13       1     136 [.     325     460 ..     325     475 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.4e-17
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvFlksvdassekktaeylaelldkvieevgaen.V..vq 96 
                 Ps++ L+++++  +v+++    +      + + ++i +Dg t +++r+l++f+v+c+++++ ++++d+s+e ktae+l++++ +v+  +  e  V  + 
  CDO72524.1 325 PSRKVLTTRIIPGTVKQYRSIAQ---LACKGKLVTIQCDGFTAANRRHLVSFMVTCERKVYTVRTFDTSTEPKTAENLVKMIYQVMRMLEDEWeVipIA 420
                 78888888888888888855555...588999********************************************************99998751257 PP

      DUF659  97 vitdnasnykkagklleekyptifwtpcaahclnlmledi 136
                 + td + + ++a  ++  ++++++   c+ah++++++ d 
  CDO72524.1 421 ITTDCSGESRAARARILGERSSLVTPDCYAHQVERVVIDY 460
                 7899999999***********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 6971.45
//
Query:       CDO72525.1  [L=255]
Description: hypothetical protein BN946_scf184983.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-20   71.8   0.2    7.5e-20   71.2   0.2    1.2  1  ADH_zinc_N       Zinc-binding dehydrogenase
    3.7e-08   34.5   0.1    8.3e-08   33.4   0.1    1.6  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0014   18.0   0.2     0.0025   17.2   0.2    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.012   16.3   0.0      0.024   15.3   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
      0.013   16.1   0.4      0.036   14.7   0.2    1.8  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.2   2.1e-23   7.5e-20       1     128 [.      94     218 ..      94     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.1e-23
                 HHHHHHHHHHH.HTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAk.alGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 g+G+ a+q+Ak +lG+ + ia d+ +e l+la++ Gad v  +ke    +++ +   +  +dvv+++vG ++t++ a++ll+ gG++ v+G+g     f
  CDO72525.1  94 GLGHNAIQIAKhILGVrTLIASDIRQESLQLARESGADLVAVPKE---LKALFKEK-KLRPDVVVDVVGKQDTFDLAVSLLRIGGKILVMGLGDATICF 188
                 89*********8889999*************************66...33333333.579*******************************98888889 PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdll 128
                 ++  l+ k+++++ s+ +  +e++++ l+ +
  CDO72525.1 189 QPLILAQKQITVQTSFAAA-NEDLEQSLAAI 218
                 999999*************.99999976655 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   2.3e-11   8.3e-08       2     129 ..     129     249 ..     128     253 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.3e-11
                   T-SEEE.ETT.STTHH.HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--..S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHH CS
  ADH_zinc_N_2   2 GAdevi.dyr.tedfe.aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp.lsaallkpakkrkgrsvkyeflfsmkasaqadileel 93 
                   GAd v    + +  f+ +   +   Dvv+d vg++++++ ++++l+ gG+++++g g+  ++++ l       ++++++++ f + a  ++d le+ 
    CDO72525.1 129 GADLVAvPKElKALFKeK---KLRPDVVVDVVGKQDTFDLAVSLLRIGGKILVMGlGDAtICFQPLI----LAQKQITVQTSF-AAA--NED-LEQS 214
                   566666322234444322...2348********66666*******888***9999776443333333....333455555555.233..689.**** PP

                   HHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SS CS
  ADH_zinc_N_2  94 aalieeGklrpvvdrvfpleeaaeAhrylesgrarG 129
                   +a i++Gk++p v+ + pl++    ++ le+g  r 
    CDO72525.1 215 LAAIAAGKIKPKVE-ERPLNDCGAVIQGLEKGEIRA 249
                   *************9.689999999988888887665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   6.9e-07    0.0025      27      96 ..      83     154 ..      61     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.9e-07
                  ---EEEEESTSHHHHHHHHHHHH.TT-EE.EEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEE CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakg.lgakV.tvlDvrparleqleslgakfvevlksqeellaeavkeadvvi 96 
                   + + lv+G G  G +Ai++ak  lg ++  + D+r++ l+  ++ ga  v v k+ ++l++e+  + dvv+
   CDO72525.1  83 PEDTLLVVGCGGLGHNAIQIAKHiLGVRTlIASDIRQESLQLARESGADLVAVPKELKALFKEKKLRPDVVV 154
                  455689***************973666551678******************************999999998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   6.7e-06     0.024       2      55 ..      88     148 ..      87     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.7e-06
                      EEET-TT.SHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH.....TTTTEEEEESBC CS
  Methyltransf_25   2 LdlGcGt.Grltlalakrl.gkakvtgvDiseemleaareraee.....eglnvefvqgda 55 
                      L +GcG  G++++++ak++ g  ++++ Di +e l+ are  ++     ++l++ f ++++
       CDO72525.1  88 LVVGCGGlGHNAIQIAKHIlGVRTLIASDIRQESLQLARESGADlvavpKELKALFKEKKL 148
                      66999876**********9999*****************9997754444333555555554 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   9.9e-06     0.036      24      89 ..     111     179 ..      91     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.9e-06
                    EEEEEESS.EEE-TTHHHHHT--CB---HHHHHHHH..S-EEEEE-S--HHHHTTHHHHHHTTEEEE-S CS
  NAD_binding_3  24 lvavadrd.sllskdrkallasealtldlddliahl..dpdvvVEcasseavaelvlkaLkagkdvvta 89 
                      +  d +   l+ +r++ +   a++++l++l+++   +pdvvV++ +++ + +l+++ L+ g  ++++
     CDO72525.1 111 TLIASDIRqESLQLARESGADLVAVPKELKALFKEKklRPDVVVDVVGKQDTFDLAVSLLRIGGKILVM 179
                    333333332334444889999999*********977878*********************999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1868.72
//
Query:       CDO72526.1  [L=222]
Description: hypothetical protein BN946_scf184983.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-07   31.9   6.0    3.1e-06   27.3   1.2    2.7  2  zf-H2C2_2  Zinc-finger double domain
    0.00034   20.9   1.5    0.00034   20.9   1.5    2.1  2  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
       0.01   16.6   1.3       0.01   16.6   1.3    2.2  2  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   1.2   5.2e-10   3.1e-06       2      25 ..     150     175 ..     149     175 .. 0.92
   2 !    6.3   0.3    0.0024        15       1      10 [.     179     188 ..     179     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 5.2e-10
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 L+ H+++Htgekp++Cp  +C+ +F+
  CDO72526.1 150 LQIHLYTHTGEKPFTCPheSCGRSFS 175
                 667***************99***995 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0024
   zf-H2C2_2   1 nLrrHirkHt 10 
                 n rrH r+Ht
  CDO72526.1 179 NMRRHARVHT 188
                 789******9 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       0.4   2.4e+03      15      23 .]     149     157 ..     146     157 .. 0.84
   2 !   20.9   1.5   5.7e-08   0.00034       1      23 []     163     187 ..     163     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.4
                 HHHHHHHCC CS
     zf-C2H2  15 nLkrHirtH 23 
                  L+ H+ tH
  CDO72526.1 149 TLQIHLYTH 157
                 6999*9999 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5.7e-08
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 ++Cp   Cg+sF+  sn++rH r+H
  CDO72526.1 163 FTCPheSCGRSFSVLSNMRRHARVH 187
                 89**********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.64   3.8e+03      14      23 ..     148     157 ..     145     158 .. 0.78
   2 ?   16.6   1.3   1.7e-06      0.01       1      23 [.     163     187 ..     163     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.64
   zf-C2H2_4  14 kaLlrHlkth 23 
                  +L+ Hl th
  CDO72526.1 148 WTLQIHLYTH 157
                 56899**999 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.7e-06
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 f+Cp+  Cg+sFs  ++++rH + h
  CDO72526.1 163 FTCPHesCGRSFSVLSNMRRHARVH 187
                 89***********9999****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1653.08
//
Query:       CDO72527.1  [L=1086]
Description: hypothetical protein BN946_scf184983.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-49  167.0   0.0    1.6e-29  103.2   0.0    4.2  3  ABC_tran        ABC transporter
    3.6e-14   53.3   0.5    0.00011   22.2   0.2    4.3  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    1.2e-13   51.0   0.0    4.1e-05   23.1   0.0    4.1  3  SMC_N           RecF/RecN/SMC N terminal domain
    1.4e-09   37.7   0.1    2.8e-09   36.8   0.1    1.5  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
    8.8e-07   28.6   0.5      0.069   12.9   0.1    3.3  3  AAA_29          P-loop containing region of AAA domain
    9.2e-07   29.6   3.6     0.0013   19.3   0.0    2.7  2  AAA_23          AAA domain
    5.5e-06   26.4   0.1      0.023   14.8   0.0    3.0  2  MMR_HSR1        50S ribosome-binding GTPase
    9.3e-06   25.9   0.0       0.27   11.3   0.1    3.0  3  DUF87           Helicase HerA, central domain
    2.1e-05   24.8   0.0       0.53   10.5   0.0    3.2  3  AAA_28          AAA domain
    2.2e-05   24.9   0.2       0.65   10.4   0.0    3.8  3  AAA_16          AAA ATPase domain
    2.5e-05   24.6   0.4       0.56   10.5   0.0    3.9  3  AAA_22          AAA domain
    2.7e-05   24.7   0.0       0.11   13.0   0.0    2.6  2  AAA_18          AAA domain
      9e-05   22.4   0.0      0.092   12.7   0.0    2.6  2  RsgA_GTPase     RsgA GTPase
    9.1e-05   22.4   0.1      0.081   12.8   0.0    3.2  3  NACHT           NACHT domain
    0.00018   21.7   0.0       0.09   12.9   0.0    2.7  2  AAA_33          AAA domain
    0.00056   19.0   0.4       0.25   10.3   0.1    2.3  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
     0.0018   18.0   0.1        2.1    8.1   0.0    2.7  2  AAA_24          AAA domain
     0.0045   15.7   0.0        1.1    7.8   0.0    2.4  2  AAA_13          AAA domain
     0.0049   16.6   0.2        4.6    6.9   0.0    3.5  3  AAA_30          AAA domain
     0.0069   16.8   0.1        3.3    8.2   0.0    2.7  2  RNA_helicase    RNA helicase
      0.007   16.6   0.0        6.5    7.0   0.0    2.6  2  Roc             Ras of Complex, Roc, domain of DAPkinase
     0.0076   16.4   8.8        1.5    9.3   0.1    5.5  5  HEAT            HEAT repeat
  ------ inclusion threshold ------
      0.011   15.7   0.1        7.9    6.5   0.0    3.0  2  AAA_14          AAA domain
      0.015   15.6   8.4          1    9.8   0.1    5.1  5  HEAT_2          HEAT repeats
      0.016   15.7   6.1        0.2   12.2   0.6    4.0  3  HEAT_EZ         HEAT-like repeat
      0.018   14.2   0.7      0.058   12.5   0.1    2.0  2  IFRD            Interferon-related developmental regulator (I
      0.027   13.6   0.7       0.15   11.1   0.4    2.0  2  MMS19_C         RNAPII transcription regulator C-terminal
      0.027   14.3   0.0      0.061   13.2   0.0    1.6  1  Tudor-knot      RNA binding activity-knot of a chromodomain
      0.028   14.2   0.2        9.5    5.9   0.1    2.5  2  ATP_bind_1      Conserved hypothetical ATP binding protein
      0.046   13.2   0.0        3.1    7.2   0.0    2.3  2  Arf             ADP-ribosylation factor family
      0.048   13.6   0.1        3.3    7.6   0.0    2.4  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.052   12.7   0.0       0.26   10.4   0.0    1.9  2  G-alpha         G-protein alpha subunit
      0.053   13.1   0.0        3.1    7.3   0.0    2.4  2  AAA_27          AAA domain
      0.061   12.5   0.0         10    5.2   0.0    2.5  2  NB-ARC          NB-ARC domain
      0.075   12.6   0.3         11    5.5   0.2    2.7  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
      0.079   12.7   1.6        3.1    7.4   0.1    2.3  2  AAA_15          AAA ATPase domain
      0.084   10.4   1.5        4.4    4.7   0.1    2.1  2  DUF3584         Protein of unknown function (DUF3584)
        0.1   12.1   0.0        2.3    7.7   0.0    2.2  2  AAA_7           P-loop containing dynein motor region
       0.13   12.2   0.2         37    4.1   0.0    3.3  3  ATPase_2        ATPase domain predominantly from Archaea
       0.13   11.8   1.0         14    5.2   0.1    3.5  3  AAA_25          AAA domain
       0.17   11.7   0.0         15    5.3   0.0    2.5  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
       0.18   11.9   0.1        1.3    9.0   0.0    2.3  2  Dynamin_N       Dynamin family
       0.19   10.3   1.5        0.6    8.6   1.4    1.7  1  Adaptin_N       Adaptin N terminal region
       0.38   10.8   1.4         20    5.2   0.1    3.4  2  AAA_5           AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       6.4   2.6e+03      25      73 ..     117     164 ..     116     205 .. 0.71
   2 !   56.8   0.1   8.2e-18   3.3e-15       3     137 .]     472     599 ..     470     599 .. 0.69
   3 !  103.2   0.0     4e-32   1.6e-29       2     137 .]     713     943 ..     712     943 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 6.4
                 HHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  25 StLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpe 73 
                 +t  k++++l  p++ +i ++  +d+ +  + ++r ++gvl    ++ ++
  CDO72527.1 117 TTATKAILKLFPPESTRIVFRtLEDILD--KGKWRTKVGVLDAMRSFANT 164
                 68899999*****999998886677777..88999999999877444443 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 8.2e-18
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTC.....HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxx.....xxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdee.....iekal 89 
                 +  l l +g++++i+G nG+GKStL++ l        G++  ++           + +++++  e++l+ e t  +        +          +k++
  CDO72527.1 472 HTRLRLFRGRRYGILGTNGSGKSTLMRQLR------DGKV--EN--------FPPQDQLRCVMVEHSLQGEDTSLSVldfvasdK---AlahvpRSKIR 551
                 5678999******************98774......5777..32........234445555555555555555444434443331...12333355555 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++l  ++++d ++ +    LSgG+k +++lara+l +++llllDEpt+
  CDO72527.1 552 EQLLEVGFDDARQADVVGGLSGGWKMKLELARAMLYNADLLLLDEPTN 599
                 55555556666665667******************************8 PP

  == domain 3  score: 103.2 bits;  conditional E-value: 4e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.....................EETTCEGGG........B-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei.....................lldgkdlke........qeleslrkeigvlpqepqlf 71 
                  nvs  l+ +++v+ivG+nGaGKStL+kll+g++ p+eG++                     +l+++++++        +++e+l+k  +vl+ e++  
  CDO72527.1 713 YNVSCALSLSSRVGIVGPNGAGKSTLVKLLTGETVPQEGTVykhpalrigyvsqhathhierHLEKTPIQYiqwrfqdgHDREILEKATRVLTDEDKAL 811
                 69************************************************************9******************************995555 PP

                 TTSB.HHHH................................................................HHHTCHHHHHHHSTTGGTTCBGESTT CS
                 xxxx.xxxx................................................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  72 pelt.vren................................................................esdeeiekalsklglkelkdtvvkss 105
                  e++ v++n                                                                ++d  ++ ++++l++++l+ ++++++
  CDO72527.1 812 LETEfVGKNgqrrklelimgrqklkksfqyeikwrgldhrfnswipreellekgfgklvqqfddlessregagQRDTSAHVVRKHLEDIGLDGDIAQYN 910
                 555559999********************************************************8888877777777******************999 PP

                 S.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 106 p.ssLSgGqkqrvalarallkkpkllllDEpta 137
                   + LSgGqk ++++a++l+++p++ +lDEp++
  CDO72527.1 911 EiAGLSGGQKIKLVIAACLWNNPQICVLDEPSN 943
                 99*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0029       1.2       3      19 ..     484     500 ..     483     516 .. 0.86
   2 !   12.6   0.0   0.00021     0.087     238     303 .]     572     632 ..     519     632 .. 0.77
   3 !   22.2   0.2   2.6e-07   0.00011       3     300 ..     726     972 ..     725     975 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0029
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 ++ G NgsGKS+L++ l
  CDO72527.1 484 GILGTNGSGKSTLMRQL 500
                 689**********9866 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00021
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 S G k  l l+ a+l+ +   +lll+DEp n+L+ + ++ l + l + ++  + +++ +H+  +ld
  CDO72527.1 572 SGGWKMKLELARAMLYNA---DLLLLDEPTNHLDRASVKWLEQYLMAQKN--VTCLIISHDSGFLD 632
                 555555566666677777...9************9999999988877766..********988776 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 2.6e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgllld 101
                 +++GpNg+GKS+L ++l +          + + ++   + +  +  + + + +  +e ++e++++q + +r+    +r+++        ++  + l++ 
  CDO72527.1 726 GIVGPNGAGKSTLVKLLTG---------ETVPQEGTVYKHPALRIGYVSQHATHHIERHLEKTPIQYIQWRFQDGHDREIL--------EKATRVLTDE 807
                 69***************64.........67888888889999999999999999999999999999999999999999999........8888888888 PP

      AAA_21 102 krsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveiels 200
                 +++l e+ ++  ++++ +  +   ++k +   +++++ +g +  ++++  ++ ll++       +g l  + d +  ++e+   ++ + ++ + ++e+ 
  CDO72527.1 808 DKALLETEFVGKNGQRRKLELIMGRQKLKKSFQYEIKWRGLDHRFNSWIPREELLEK------GFGKLVQQFDDLESSREGAGQRDTSAHVVRKHLEDI 900
                 888888888888888888888888888888888888777777777777777766666......777777777777777777777777777777777777 PP

      AAA_21 201 dlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                  l+  + ++++++ +                      S G+k    +++a+l  ++   + ++DEp n+L+ ++l  l+  +ke s     v++ +H+ 
  CDO72527.1 901 GLDGDIAQYNEIAGL----------------------SGGQKIK-LVIAACLWNNP--QICVLDEPSNFLDREALGGLAVAIKEWSG---AVVIISHNE 971
                 776666555555555......................*******.99999998888..9*************888888877765555...999999996 PP

      AAA_21 300 l 300
                 +
  CDO72527.1 972 E 972
                 6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0049         2      26      42 ..     482     498 ..     471     501 .. 0.80
   2 !   13.1   0.0   0.00012     0.048     137     205 ..     571     634 ..     539     646 .. 0.84
   3 !   23.1   0.0     1e-07   4.1e-05      27     203 ..     725     975 ..     713     985 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0049
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                    i+G NGSGKs l+ 
  CDO72527.1 482 RYGILGTNGSGKSTLMR 498
                 5679*********9986 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00012
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 LSgG k    + L +A  +   a l llDe   +LD + vk + ++l +++ n+  ++is+++++l  +
  CDO72527.1 571 LSGGWK----MKLELARAMLYNADLLLLDEPTNHLDRASVKWLEQYLMAQK-NVTCLIISHDSGFLDTV 634
                 555544....6788899999999************************9987.9999******9998766 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 1e-07
                 EEEEESTTSSHHHHHHHHHHHCTT......TTTTTTCHCCCCCC--BTTCSSTTEEEEE...EEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGer.....sakklrseklsdlihkskekasvkkaeve...itfdnedkklkiekeevsisrrvkrkge.seykingk 116
                   ivGpNG+GKs l+  +      +     +  +lr   +s+  ++ + +++++k  ++     f++  ++ +i ++ + + +    k    e ++ gk
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLTGETVPQegtvyKHPALRIGYVSQHATH-HIERHLEKTPIQyiqWRFQDGHDR-EILEKATRVLTDED-K-AlLETEFVGK 819
                 569***********99884322222111112234555555554444.455555555554000445444444.23333332222222.2.2356777899 PP

                 EE-HHHHHHHHHCTT-STT...........................................................................CS-HH CS
                 xxxxxxxxxxxxxxxxxxx...........................................................................xxxxx RF
       SMC_N 117 evtkkevsellesagiske...........................................................................lLSgG 140
                 + ++++++ ++ +++++k+                                                                            LSgG
  CDO72527.1 820 NGQRRKLELIMGRQKLKKSfqyeikwrgldhrfnswipreellekgfgklvqqfddlessregagqrdtsahvvrkhledigldgdiaqyneiaGLSGG 918
                 9999999999999999999******************************************************************************** PP

                 HHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 141 ektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 +k    + L++A    +   +++lDe    LD +    +a  +ke s    +++is++ee+++
  CDO72527.1 919 QK----IKLVIAACLWNNPQICVLDEPSNFLDREALGGLAVAIKEWS--GAVVIISHNEEFVH 975
                 *9....78888888899999**************************9..889*******9987 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   6.8e-12   2.8e-09       5      53 ..     828     875 ..     825     876 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 6.8e-12
                 EEEEEEEETTEECEEEEEEETTSTGGGTEEEE.GGGCSSHSHHHHHHHHH CS
      Chromo   5 rIidhrtdkdgleleYlVKWkglpysentWEp.eenlekcfqelideFkk 53 
                  I+++++ k+    +Y +KW+gl++  n+W p ee+lek f +l+++F++
  CDO72527.1 828 LIMGRQKLKKSF--QYEIKWRGLDHRFNSWIPrEELLEKGFGKLVQQFDD 875
                 599*********..******************66788888********87 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00036      0.15      25      39 ..     483     497 ..     471     499 .. 0.83
   2 !   12.9   0.1   0.00017     0.069      24      39 ..     724     739 ..     713     749 .. 0.78
   3 ?   -1.9   0.0       7.3     3e+03       3      14 ..    1065    1076 ..    1064    1083 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00036
      AAA_29  25 tlltGpsGsGKSTll 39 
                 + + G++GsGKSTl+
  CDO72527.1 483 YGILGTNGSGKSTLM 497
                 5699*********97 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00017
      AAA_29  24 atlltGpsGsGKSTll 39 
                  + ++Gp+G+GKSTl+
  CDO72527.1 724 RVGIVGPNGAGKSTLV 739
                 4669***********8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 7.3
      AAA_29    3 rlqlvNWgtfdg 14  
                  r++ +NW tf g
  CDO72527.1 1065 RIRKLNWLTFGG 1076
                  78889*****87 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0014      0.57      23      40 ..     484     501 ..     478     532 .. 0.89
   2 !   19.3   0.0   3.2e-06    0.0013      23     128 ..     726     833 ..     720     887 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0014
      AAA_23  23 lItGpNGaGKTTildAik 40 
                  I G NG+GK+T+++ ++
  CDO72527.1 484 GILGTNGSGKSTLMRQLR 501
                 599**********98665 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.2e-06
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks..........grgfe..ksdveiesegkvkayveltfenkdgrytrsiererelskkkgkttkkakl 109
                  I+GpNGaGK+T++  ++  +  + ++               +      ++ +e + e++  +y++ +f++ ++r+   i ++ ++  +++++   + +
  CDO72527.1 726 GIVGPNGAGKSTLVKLLTGETVPQEGTV---YkhpalrigyvS---QhaTHHIERHLEKTPIQYIQWRFQDGHDRE---ILEKATRVLTDEDKALLE-T 814
                 59***********997665555443332...134577554322...123555666666888888999998888865...444444444443332222.2 PP

      AAA_23 110 elleideleqfisellgsk 128
                 e ++++ ++++++ ++g++
  CDO72527.1 815 EFVGKNGQRRKLELIMGRQ 833
                 2233333344444333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0047       1.9       2      25 ..     483     504 ..     482     626 .. 0.83
   2 !   14.8   0.0   5.6e-05     0.023       1      24 [.     724     747 ..     724     773 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0047
                 EEEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekai 25 
                  +i+G   +GKStL+++l +   +
  CDO72527.1 483 YGILGTNGSGKSTLMRQLRDG--K 504
                 589**************9764..3 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.6e-05
                 EEEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgeka 24 
                 +v+ivG   +GKStL++ ltge++
  CDO72527.1 724 RVGIVGPNGAGKSTLVKLLTGETV 747
                 69******************9843 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00099       0.4      24      44 ..     481     501 ..     474     518 .. 0.86
   2 !   11.3   0.1   0.00067      0.27      22      48 ..     721     747 ..     714     753 .. 0.87
   3 ?   -2.0   0.0       7.8   3.2e+03     152     182 ..    1049    1079 ..    1009    1085 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00099
       DUF87  24 rHlAilgsTGsGKSntvavLl 44 
                 r+ +ilg+ GsGKS++++ L 
  CDO72527.1 481 RRYGILGTNGSGKSTLMRQLR 501
                 889**************9875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00067
       DUF87  22 vtrHlAilgsTGsGKSntvavLleell 48 
                 ++ +++i+g  G+GKS++v++L  e +
  CDO72527.1 721 LSSRVGIVGPNGAGKSTLVKLLTGETV 747
                 5889******************98877 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 7.8
       DUF87  152 kekeelrklknqaiarlldkledllrkggsf 182 
                  k+k++++++k q ++r ++kl++l + g + 
  CDO72527.1 1049 KKKLTRNQQKAQEERRRIRKLNWLTFGGPKP 1079
                  3345689999999999999999998876665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         5     2e+03      77      94 ..     392     409 ..     390     451 .. 0.72
   2 !   10.3   0.0    0.0015      0.62       4      38 ..     485     521 ..     482     553 .. 0.75
   3 !   10.5   0.0    0.0013      0.53       2      44 ..     725     772 ..     724     811 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5
      AAA_28  77 fcDrglldtlaYaraygg 94 
                 + Dr++ d++a++r  g 
  CDO72527.1 392 VHDRNFTDSAAWHRCVGA 409
                 78***********99876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0015
      AAA_28   4 itGgestGKTtlleaLaargypvv..pEaareileek 38 
                 i+G+ ++GK+tl+++L + +++ +  ++  r ++ e+
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVENFppQDQLRCVMVEH 521
                 89**************977666554455555555555 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0013
      AAA_28   2 ivitGgestGKTtlleaLa.ar....gypvvpEaareileeklakged 44 
                 + i+G+ ++GK+tl++ L+ ++    g+++ + a r  + +++a+++ 
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLTgETvpqeGTVYKHPALRIGYVSQHATHHI 772
                 779****************62244435555555555444444444443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.42   1.7e+02      96     144 ..     213     278 ..     133     294 .. 0.66
   2 ?    7.5   0.0     0.012       4.9      29      46 ..     485     502 ..     468     624 .. 0.74
   3 !   10.4   0.0    0.0016      0.65      27      63 ..     725     771 ..     714     888 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.42
      AAA_16  96 awrekleeala................avpelagaeasrllellkrll.allsrderplvlvlDdl 144
                 ++  +l + ++                 v+e+++ +   l  ll r+l +++ + +r +v+v+D+l
  CDO72527.1 213 PHIPALVKCMSnpdavpacikalsnttFVAEVTAPALAVLVPLLIRALnDRSMEVQRRTVVVIDNL 278
                 3333333333355544444444444443444444444888889999999999999999******98 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.012
      AAA_16  29 lsGesGvGKsslvrellr 46 
                 + G  G+GKs+l+r+l++
  CDO72527.1 485 ILGTNGSGKSTLMRQLRD 502
                 78*************996 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0016
      AAA_16  27 vllsGesGvGKsslvrellralekd..........ggiflrgkcdql 63 
                 v ++G+ G GKs+lv+ l  +   +          ++ +++++++++
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLTGETVPQegtvykhpalRIGYVSQHATHH 771
                 5689***********99996555554656655555444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       2.3   9.3e+02      80     103 ..     254     281 ..     231     300 .. 0.73
   2 !   10.5   0.0    0.0014      0.56      10      62 ..     485     538 ..     480     625 .. 0.72
   3 !    8.4   0.0    0.0061       2.5      10      29 ..     727     746 ..     725     780 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2.3
      AAA_22  80 ealeqalrarav....ielliiDEaqhl 103
                  +l +al++r++    + +++iD+  +l
  CDO72527.1 254 PLLIRALNDRSMevqrRTVVVIDNLVKL 281
                 55666666666666669******98665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0014
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellr 62 
                 + G  G+GK+tl+r+l++ ++e +++ + + ++v v+ + ++  +s ++l  +++
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVE-NFPPQDQLRCVMVEHSLQGedTSLSVLDFVAS 538
                 67999*************9854.44444555555444443333355555555555 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0061
      AAA_22  10 vtGesGtGKTtllrrlleql 29 
                 ++G+ G+GK+tl++ l+ + 
  CDO72527.1 727 IVGPNGAGKSTLVKLLTGET 746
                 89************998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00027      0.11       3      42 ..     485     528 ..     484     555 .. 0.79
   2 !    9.0   0.0    0.0048         2       1      19 [.     725     743 ..     725     806 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00027
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf...gvnlrdvakenglllevd 42 
                 + Gt G+GK+tl + L++   ++    ++lr+v  e+ l  e++
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKvENfppQDQLRCVMVEHSLQGEDT 528
                 89**************8875444699888888877777766655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0048
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 +++ G+ G+GK+tl k L 
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLT 743
                 689*************994 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       5.5      99     122 ..     480     503 ..     472     541 .. 0.78
   2 !   12.7   0.0   0.00022     0.092     102     130 ..     725     753 ..     699     778 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.013
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++   ++G  G GKStL+ +l+  
   CDO72527.1 480 GRRYGILGTNGSGKSTLMRQLRDG 503
                  5666789**************986 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00022
                  EEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgev 130
                  + +vG+ G+GKStL++ l++e+  + g v
   CDO72527.1 725 VGIVGPNGAGKSTLVKLLTGETVPQEGTV 753
                  4589****************965555544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         3   1.2e+03      77     110 ..     265     293 ..     253     303 .. 0.81
   2 !   12.8   0.0    0.0002     0.081       5      85 ..     485     592 ..     481     638 .. 0.65
   3 ?    5.5   0.0     0.036        15       3      20 ..     725     742 ..     723     817 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3
                 CCSCCCEEEEEE-STT-SS-TCH.........HH CS
       NACHT  77 lelperlLlilDglDelvtdlgqkekqpvrtlLs 110
                 +e+++r++ ++D l +lv+d++      + t Ls
  CDO72527.1 265 MEVQRRTVVVIDNLVKLVRDPNV-----AATYLS 293
                 7899*************999887.....555555 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.0002
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C........................CHHHHCCS CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse........................vwavllel 79 
                 + G +GsGK+tL+++l +   e+ +pq++  l  ++  ++l+ + +++s+ d+++s+      p s+                        +w++ lel
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVENFPPQDQ--LRCVMVEHSLQGEDTSLSVLDFVASDKALAHVPRSKireqllevgfddarqadvvgglsgGWKMKLEL 581
                 89*****************9999999975..55555555566655567777877776554444444444455555555555666666666666666666 PP

                 CCCEE.....E CS
       NACHT  80 perlL.....l 85 
                 ++ +L     l
  CDO72527.1 582 ARAMLynadlL 592
                 66666666633 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.036
                 EEEEC-TTTCHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkl 20 
                 v + G++G GK+tL++ l
  CDO72527.1 725 VGIVGPNGAGKSTLVKLL 742
                 6699**********9866 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.037        15       6      19 ..     487     500 ..     485     520 .. 0.90
   2 !   12.9   0.0   0.00022      0.09       4      91 ..     727     828 ..     725     837 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.037
      AAA_33   6 GlpGsGKstlaerl 19 
                 G +GsGKstl ++l
  CDO72527.1 487 GTNGSGKSTLMRQL 500
                 99*********997 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00022
      AAA_33   4 lvGlpGsGKstlaerllkklg...avllssdtlrrrlfg.........tdqqsktdytrvldr..lyqilnelarkalsagrnvildatnlsrrerarf 88 
                 +vG++G+GKstl++ l  ++    +++   ++lr  ++            ++++ +y++++++    + + e a+++l+ +  ++l   ++ ++ ++r+
  CDO72527.1 727 IVGPNGAGKSTLVKLLTGETVpqeGTVYKHPALRIGYVSqhathhierHLEKTPIQYIQWRFQdgHDREILEKATRVLTDEDKALLETEFVGKNGQRRK 825
                 69************9976666777888888886665555333333333334444488998877777777778899999999999999988888777776 PP

      AAA_33  89 lkl 91 
                 l+l
  CDO72527.1 826 LEL 828
                 665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0088       3.6      19      49 ..     470     500 ..     462     507 .. 0.82
   2 !   10.3   0.1    0.0006      0.25      15      52 ..     708     745 ..     693     753 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0088
                 HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB  19 lerllakaGraqvvGltGvPGaGkstlveal 49 
                 l++ + +  r ++ G+ G+ G+Gkstl+ +l
  CDO72527.1 470 LSHTRLRLFRGRRYGILGTNGSGKSTLMRQL 500
                 5566666678899**************9987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0006
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealgle 52 
                 +k  l +++     + +vG+ G  GaGkstlv+ l+ e
  CDO72527.1 708 SKPSLYNVSCALSLSSRVGIVGPNGAGKSTLVKLLTGE 745
                 5566666666777789****************998755 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0097         4       2      22 ..     480     500 ..     479     529 .. 0.85
   2 !    8.1   0.0    0.0051       2.1       4      23 ..     724     743 ..     721     750 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0097
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 ++++ i G +g+GK+tl+++l
  CDO72527.1 480 GRRYGILGTNGSGKSTLMRQL 500
                 57889**************99 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0051
      AAA_24   4 kiliyGpsgiGKTtlakelg 23 
                 ++ i+Gp+g+GK+tl+k l+
  CDO72527.1 724 RVGIVGPNGAGKSTLVKLLT 743
                 799*************9884 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0027       1.1      21      42 ..     485     506 ..     476     536 .. 0.84
   2 ?    5.1   0.0     0.018       7.2      21      40 ..     727     746 ..     717     778 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
      AAA_13  21 iYGwNGaGKTtLSrllrslelg 42 
                 i G+NG+GK+tL r lr+ + +
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVE 506
                 78**************997554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.018
      AAA_13  21 iYGwNGaGKTtLSrllrsle 40 
                 i G NGaGK+tL +ll   +
  CDO72527.1 727 IVGPNGAGKSTLVKLLTGET 746
                 679***********998754 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       6.7   2.7e+03      56      81 ..      32      60 ..      20      80 .. 0.69
   2 ?    5.3   0.0     0.035        14      23      40 ..     485     502 ..     476     511 .. 0.87
   3 ?    6.9   0.0     0.011       4.6      21      45 ..     725     750 ..     715     807 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.7
      AAA_30 56 gkaAkvLae...elgieastiakllkrlk 81
                ++aA++La+   ++g+e+ t a++l++l 
  CDO72527.1 32 KAAADRLAReisKTGLESLTDANILSTLH 60
                45667777522267889999999998776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.035
      AAA_30  23 ltGpAGtGKttalkalre 40 
                 + G  G+GK+t++++lr+
  CDO72527.1 485 ILGTNGSGKSTLMRQLRD 502
                 77999*********9986 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.011
      AAA_30  21 avltGpAGtGKttalkal.reaweaa 45 
                 + ++Gp G+GK+t++k l  e++ ++
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLtGETVPQE 750
                 6799************9944555544 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.052        21       3      20 ..     485     502 ..     484     520 .. 0.85
   2 !    8.2   0.0     0.008       3.3       3      35 ..     727     754 ..     725     769 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.052
  RNA_helicase   3 lyGpsgeGKStlakeLak 20 
                   + G +g GKStl+++L +
    CDO72527.1 485 ILGTNGSGKSTLMRQLRD 502
                   6799**********9865 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.008
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvy 35 
                   ++Gp+g GKStl+k L+ +       +++++vy
    CDO72527.1 727 IVGPNGAGKSTLVKLLTGETV-----PQEGTVY 754
                   79*************765554.....5555555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.017       7.1       4      26 ..     485     507 ..     482     542 .. 0.81
   2 ?    7.0   0.0     0.016       6.5       2      26 ..     725     749 ..     724     787 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
                 EESSTTSSHHHHHHCHCT-CCC- CS
         Roc   4 lvGdsgvGKtsllkrfvedkfse 26 
                 ++G +g+GK++l++++ ++k+++
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVEN 507
                 79***************999875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.016
                 EEEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfse 26 
                 v +vG +g+GK++l+k ++ +++ +
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLTGETVPQ 749
                 679*************999888754 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1         8   3.3e+03      17      30 ..      72      85 ..      72      86 .. 0.90
   2 ?   -0.8   0.0       6.5   2.6e+03       4      29 ..     100     125 ..      98     127 .. 0.74
   3 ?    5.7   0.1     0.053        22       2      29 ..     177     204 ..     177     206 .. 0.89
   4 !    9.3   0.1    0.0038       1.5       1      22 [.     252     273 ..     252     285 .. 0.80
   5 ?    1.4   0.0       1.2     5e+02      14      29 ..     309     324 ..     303     325 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 8
                HHHHHHHHHHHHHC CS
        HEAT 17 ReaAakaLgalaev 30
                Re+Aa a+  la v
  CDO72527.1 72 RESAAIAFHSLATV 85
                99********9987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 6.5
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +l +l +D+   VR aA  a  a+++
  CDO72527.1 100 FLYELYMDKGDVVRTAATTATKAILK 125
                 5666667777789****999888776 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.053
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 +P +  +++D+ +eV +aA+k+ +al+ 
  CDO72527.1 177 IPKVEAAMHDTKAEVSSAAIKCATALCT 204
                 58888999**************999996 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0038
                 HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAak 22 
                 l+Pll+++l+D s+eV + ++ 
  CDO72527.1 252 LVPLLIRALNDRSMEVQRRTVV 273
                 79*************9555554 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgalae 29 
                 peVR+ A  aLg+l +
  CDO72527.1 309 PEVRAFAESALGTLQK 324
                 9***********9976 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.028        11       5      27 ..     483     505 ..     479     638 .. 0.89
   2 ?    6.5   0.0     0.019       7.9       5      35 ..     725     754 ..     722     807 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.028
      AAA_14   5 lvitGaRrvGKTtllkqlikell 27 
                 + i G   +GK+tl++ql + + 
  CDO72527.1 483 YGILGTNGSGKSTLMRQLRDGKV 505
                 579999***********977666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.019
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesily 35 
                 + i+G+  +GK+tl+k l  e   ++e ++y
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLTGETV-PQEGTVY 754
                 679************99988776.5554444 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.93   3.8e+02      56      86 ..      87     119 ..      15     121 .. 0.48
   2 ?    9.8   0.1    0.0025         1       6      75 ..     141     226 ..     137     236 .. 0.75
   3 ?    3.6   0.1      0.22        91      33      52 ..     253     272 ..     208     295 .. 0.63
   4 ?    3.7   0.1      0.19        79       2      56 ..     254     320 ..     253     330 .. 0.48
   5 ?    1.5   0.0      0.98     4e+02       5      29 ..     300     324 ..     292     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.93
      HEAT_2  56 gaigdpe...alpaLkellddddddvvReaAaea 86 
                 ga   p    +l++L el+  d+ dvvR+aA+ a
  CDO72527.1  87 GAACAPLllpSLSFLYELY-MDKGDVVRTAATTA 119
                 2222222333677888866.67888888888765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0025
      HEAT_2   6 qalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai....gdpe...alpaLkelldddd 75 
                  +l +   + ++  +++a+ +++n+          +++p +  ++ d++++v  aa++ + a+    ++p+    +paL +++ ++d
  CDO72527.1 141 DIL-DKGKWRTKVGVLDAMRSFANTardavanelgTTIPKVEAAMHDTKAEVSSAAIKCATALcttlANPDlspHIPALVKCMSNPD 226
                 555.667777777888888877777676777767788*********************99988444433553337999999998765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.22
      HEAT_2  33 lpaLvellededpavRraaa 52 
                 +p+L+++l+d +++v+r  +
  CDO72527.1 253 VPLLIRALNDRSMEVQRRTV 272
                 45555555555555555444 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.19
      HEAT_2   2 daLlqalendpdpevrraairaLg....rignpea........lpaLvelled.edpavRraaaeaLg 56 
                 ++L+ al nd + ev+r+++ ++       ++p +        ++ + ++++  + p+vR+ a  aLg
  CDO72527.1 254 PLLIRAL-NDRSMEVQRRTVVVIDnlvkLVRDPNVaatylsplVEGVEKIAKGaAFPEVRAFAESALG 320
                 5667777.777777777777666655543344422222222224444444422133555555555555 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.98
      HEAT_2   5 lqalendpdpevrraairaLgrign 29 
                  ++++  ++pevr+ a  aLg+++ 
  CDO72527.1 300 EKIAKGAAFPEVRAFAESALGTLQK 324
                 56777799************97654 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.78   3.2e+02       3      49 ..      71     117 ..      70     119 .. 0.84
   2 ?    1.4   0.1       1.2   4.7e+02      20      44 ..     209     228 ..     193     231 .. 0.80
   3 ?   12.2   0.6   0.00048       0.2       6      48 ..     230     272 ..     229     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.78
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAa 49 
                 +R++Aa a+ +la + + +++pl+   l +L  l +d+ d VR+aA 
  CDO72527.1  71 ERESAAIAFHSLATVLGAACAPLLLPSLSFLYELYMDKGDVVRTAAT 117
                 588888899668888888899988899999999999999999***96 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 1.2
     HEAT_EZ  20 ellqplvpeilpaLlalLnddsdeV 44 
                 ++l+p++p++++++       +d+V
  CDO72527.1 209 PDLSPHIPALVKCMS-----NPDAV 228
                 578999999999998.....76665 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00048
     HEAT_EZ   6 aAawaLGr...laggepellqplvpeilpaLlalLnddsdeV.RaaA 48 
                 a++ aL++   +a++ +++l+    +++p+L+++Lnd s eV R ++
  CDO72527.1 230 ACIKALSNttfVAEVTAPALA----VLVPLLIRALNDRSMEVqRRTV 272
                 567899999998877777777....*****************66665 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.8   1.1e+03     132     188 ..      62     118 ..      53     126 .. 0.71
   2 ?   12.5   0.1   0.00014     0.058      69     162 ..     163     247 ..     153     277 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.8
        IFRD 132 iikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqsieaadsa 188
                 ++++++  ++  +aai   +l+t++g+a    ++ ++ fl e+++ +g  +  a  +
  CDO72527.1  62 YATNKKSGYERESAAIAFHSLATVLGAACAPLLLPSLSFLYELYMDKGDVVRTAATT 118
                 555555355556666666689999999999999999999999999999887765544 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00014
        IFRD  69 hyleefveerlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLglltfvggadee 162
                 + + + v+++l t ++ +e +++  k+e  ++A+k++++lc tl           +l+p++ +++k  s +++a  a+i+aL+ +tfv++ +  
  CDO72527.1 163 NTARDAVANELGTTIPKVEAAMHDTKAEVSSAAIKCATALCTTLAN--------PDLSPHIPALVKCMS-NPDAVPACIKALSNTTFVAEVTAP 247
                 567899*************************************553........478999999999999.999***************987755 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.62   2.5e+02     362     418 ..     163     220 ..     161     223 .. 0.86
   2 ?   11.1   0.4   0.00037      0.15     364     418 ..     241     297 ..     209     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.62
     MMS19_C 362 hvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksile.espslvsehlssLvp 418
                 ++ ++ + +eL t +P +  a++ ++aev ++++++ +++++  ++  +s+h+ +Lv+
  CDO72527.1 163 NTARDAVANELGTTIPKVEAAMHDTKAEVSSAAIKCATALCTtLANPDLSPHIPALVK 220
                 667788999********************************96335557889999997 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00037
     MMS19_C 364 PkslllpeLptLlPlLlqaLdlpdaevkastLetlksile..espslvsehlssLvp 418
                   ++  p L  L+PlL++aL+  + ev++ t  ++ ++++   +p++ + +ls Lv+
  CDO72527.1 241 VAEVTAPALAVLVPLLIRALNDRSMEVQRRTVVVIDNLVKlvRDPNVAATYLSPLVE 297
                 568999*********************************99999*********9997 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00015     0.061      12      53 ..     819     861 ..     801     863 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00015
                 TTSCEEEEEEEEEEE.TSSCEEEEEEETTS-CCC-EEEETTTE CS
  Tudor-knot  12 kdgelrkAeilsire.kkgkyeYYVHYeefNkRlDeWVsaeri 53 
                 k+g+ rk e++  r+  k++ +Y + +++++ R + W+++e++
  CDO72527.1 819 KNGQRRKLELIMGRQkLKKSFQYEIKWRGLDHRFNSWIPREEL 861
                 489999999999999445559*******************987 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.025        10       1      17 [.     485     501 ..     485     507 .. 0.89
   2 ?    5.9   0.1     0.023       9.5       1      17 [.     727     743 ..     727     755 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.025
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 ++G+ GsGK+t++++l 
  CDO72527.1 485 ILGTNGSGKSTLMRQLR 501
                 68***********9986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.023
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 +vGp G+GK+t+v+ l+
  CDO72527.1 727 IVGPNGAGKSTLVKLLT 743
                 79***********9875 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0076       3.1      16      46 ..     482     512 ..     470     539 .. 0.80
   2 ?    3.3   0.0      0.13        51      15      39 ..     723     747 ..     713     758 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0076
                 EEEEEESTTSSHHHHHHHHHHSSCEECSSSS CS
         Arf  16 rilllGLDnaGKtTilkklkleelvttvPTi 46 
                 r  +lG  ++GK+T++ +l+++++++  P  
  CDO72527.1 482 RYGILGTNGSGKSTLMRQLRDGKVENFPPQD 512
                 55689*******************9988865 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
                 EEEEEEESTTSSHHHHHHHHHHSSC CS
         Arf  15 lrilllGLDnaGKtTilkklkleel 39 
                  r+ ++G  +aGK+T++k l+ e +
  CDO72527.1 723 SRVGIVGPNGAGKSTLVKLLTGETV 747
                 68889***********998877655 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0082       3.3       8      35 ..     485     512 ..     479     531 .. 0.77
   2 ?    3.3   0.0      0.17        70       8      25 ..     727     744 ..     722     761 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0082
  Ploopntkinase3   8 lvGqPGaGkstlmaeltkgfdrskveqe 35 
                     ++G+ G+Gkstlm +l +g + +   q+
      CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVENFPPQD 512
                     789*************998776655544 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.17
  Ploopntkinase3   8 lvGqPGaGkstlmaeltk 25 
                     +vG  GaGkstl+  lt 
      CDO72527.1 727 IVGPNGAGKSTLVKLLTG 744
                     89***********99985 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00064      0.26      28      80 ..     485     535 ..     477     600 .. 0.82
   2 ?   -0.9   0.0       1.7   7.1e+02      27      44 ..     726     743 ..     719     808 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
                 EEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHH CS
     G-alpha  28 llGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktileales 80 
                 +lG+++SGKsT+++ql+  + ++f  +   ++r v+ ++ ++  +t l  l++
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKVENFPPQ--DQLRCVMVEHSLQGEDTSLSVLDF 535
                 79***************7777778877..677777777777666666665555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
                 EEEESTTSSHHHHHHHHH CS
     G-alpha  27 lllGqseSGKsTilkqlk 44 
                  ++G ++ GKsT++k l 
  CDO72527.1 726 GIVGPNGAGKSTLVKLLT 743
                 578999999999998654 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.17        68      31      48 ..     485     502 ..     475     503 .. 0.91
   2 ?    7.3   0.0    0.0077       3.1      31      74 ..     727     765 ..     720     807 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.17
      AAA_27  31 iyGpNEAGKstalrAisd 48 
                 i+G+N +GKst++r ++d
  CDO72527.1 485 ILGTNGSGKSTLMRQLRD 502
                 89***********98765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0077
      AAA_27  31 iyGpNEAGKstalrAisdllfGipertkdnflhdakkLrigavl 74 
                 i+GpN AGKst+++    ll G ++  ++  +++   Lrig v 
  CDO72527.1 727 IVGPNGAGKSTLVK----LLTG-ETVPQEGTVYKHPALRIGYVS 765
                 89*********876....4433.444455566666666666555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.025        10      24      41 ..     484     501 ..     478     596 .. 0.84
   2 ?    4.5   0.0     0.042        17      23      38 ..     725     740 ..     716     778 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.025
                 EEEESTTSSHHHHHHHHC CS
      NB-ARC  24 alvGmgGvGKttlakqil 41 
                 ++ G  G+GK+tl++q  
  CDO72527.1 484 GILGTNGSGKSTLMRQLR 501
                 689************975 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.042
                 EEEEESTTSSHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlak 38 
                 v++vG  G GK+tl+k
  CDO72527.1 725 VGIVGPNGAGKSTLVK 740
                 89************97 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.078        32       4      21 ..     484     501 ..     482     529 .. 0.86
   2 ?    5.5   0.2     0.028        11       3      21 ..     725     743 ..     723     753 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.078
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                 ++ G  GsGK+tL+++l 
  CDO72527.1 484 GILGTNGSGKSTLMRQLR 501
                 578999********9985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++++G+ G+GK+tL++ l+
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLT 743
                 579***********98776 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.084        34      28      43 ..     485     500 ..     484     507 .. 0.89
   2 ?    7.4   0.1    0.0077       3.1      22      43 ..     722     742 ..     715     744 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.084
      AAA_15  28 liGkNnsGKSsileal 43 
                 + G+N+sGKS++++ l
  CDO72527.1 485 ILGTNGSGKSTLMRQL 500
                 56*********99765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0077
      AAA_15  22 seeltvliGkNnsGKSsileal 43 
                 s+    ++G+N++GKS+++++l
  CDO72527.1 722 SS-RVGIVGPNGAGKSTLVKLL 742
                 55.5669************998 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.011       4.4      22      36 ..     485     499 ..     477     500 .. 0.88
   2 ?    4.6   0.1     0.011       4.6      14      37 ..     719     742 ..     716     743 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
     DUF3584  22 ieGtNaaGKTtLlrL 36 
                 i GtN++GK tL+r 
  CDO72527.1 485 ILGTNGSGKSTLMRQ 499
                 89***********95 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
     DUF3584  14 ldldghtnieGtNaaGKTtLlrLi 37 
                 l l+ ++ i+G N+aGK tL +L+
  CDO72527.1 719 LSLSSRVGIVGPNGAGKSTLVKLL 742
                 789999***************997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.41   1.7e+02      37      54 ..     484     501 ..     472     524 .. 0.82
   2 ?    7.7   0.0    0.0056       2.3      31      88 ..     720     778 ..     712     782 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.41
       AAA_7  37 llvGptGtGKtviikdll 54 
                  + G+ G+GK++++++l 
  CDO72527.1 484 GILGTNGSGKSTLMRQLR 501
                 578***********9875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0056
       AAA_7  31 knkkpvllvGptGtGKtviikd.llkkldkekylsltinfsaqtsanqlqdiiesklek 88 
                 + +  v +vGp G GK++++k  + +++++e +++++  +     +++  + ie++lek
  CDO72527.1 720 SLSSRVGIVGPNGAGKSTLVKLlTGETVPQEGTVYKHPALRIGYVSQHATHHIERHLEK 778
                 55677889**************7777888888888888888888888888888888887 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.68   2.8e+02     107     151 ..     261     301 ..     229     308 .. 0.72
   2 ?    4.1   0.0      0.09        37      25      40 ..     485     500 ..     479     509 .. 0.88
   3 ?    2.2   0.0      0.36   1.5e+02      25      41 ..     727     743 ..     720     834 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.68
    ATPase_2 107 elllekikkkgkkiiiiiDelqklidlglngaellvkeLlnlies 151
                 ++  ++++   ++ +++iD l kl+    n a+ +++ L++ +e+
  CDO72527.1 261 NDRSMEVQ---RRTVVVIDNLVKLV-RDPNVAATYLSPLVEGVEK 301
                 33333333...3489********99.7788889999988887766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.09
    ATPase_2  25 iYGpegsGKtaLlkei 40 
                 i G  gsGK++L++++
  CDO72527.1 485 ILGTNGSGKSTLMRQL 500
                 88************96 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.36
    ATPase_2  25 iYGpegsGKtaLlkeii 41 
                 i Gp g GK++L+k + 
  CDO72527.1 727 IVGPNGAGKSTLVKLLT 743
                 78**********99665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.035        14     126     177 ..     253     304 ..     233     308 .. 0.84
   2 ?   -0.7   0.0       2.2   8.9e+02      38      52 ..     485     499 ..     476     501 .. 0.79
   3 ?    2.4   0.0      0.24     1e+02      34      50 ..     723     739 ..     709     769 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.035
      AAA_25 126 ltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriar 177
                 ++  ++al ++  ev +  +vviD+l ++++  + +++  ++lve +e+ia+
  CDO72527.1 253 VPLLIRALNDRSMEVQRRTVVVIDNLVKLVRDPNVAATYLSPLVEGVEKIAK 304
                 566788899999999999***********99888888888999999999964 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.2
      AAA_25  38 laGapgtGKttlald 52 
                 + G  g+GK+tl  +
  CDO72527.1 485 ILGTNGSGKSTLMRQ 499
                 67999******9766 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.24
      AAA_25  34 elallaGapgtGKttla 50 
                 + + ++G+ g+GK+tl+
  CDO72527.1 723 SRVGIVGPNGAGKSTLV 739
                 566689*********97 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.13        52       6      26 ..     485     505 ..     481     511 .. 0.87
   2 ?    5.3   0.0     0.037        15       3      27 ..     724     748 ..     722     787 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.13
   PduV-EutP   6 liGkvgsGKttLtqalkgeel 26 
                 ++G+ gsGK tL+++l++ ++
  CDO72527.1 485 ILGTNGSGKSTLMRQLRDGKV 505
                 68**************98665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.037
   PduV-EutP   3 killiGkvgsGKttLtqalkgeelk 27 
                 ++ ++G+ g+GK tL + l+ge++ 
  CDO72527.1 724 RVGIVGPNGAGKSTLVKLLTGETVP 748
                 77799***************98764 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1         3   1.2e+03       3      18 ..     485     500 ..     484     505 .. 0.84
   2 ?    9.0   0.0    0.0032       1.3       1      30 [.     725     753 ..     725     819 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3
                 EEEBTTTTHHHHHHHH CS
   Dynamin_N   3 vvGsqSsGKSSvlnaL 18 
                 ++G+  sGKS+++ +L
  CDO72527.1 485 ILGTNGSGKSTLMRQL 500
                 689999*****98766 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0032
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnp 30 
                 + +vG   +GKS+++  L+ge + p + ++
  CDO72527.1 725 VGIVGPNGAGKSTLVKLLTGETV-PQEGTV 753
                 679******************96.554444 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.4    0.0015       0.6     116     227 ..     177     289 ..     149     354 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0015
                 HHHHHHHHT-SSHHHHHHHHHHHHHCCCC..CHHCCCCCHHHHHHHCTT-SS..HHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHHHHHHCS-HHHH CS
   Adaptin_N 116 apaikkllkdrspyvrkkAalailklykk..dpdllrkqlveeikellsdkd..pgvvlaAvalleei.kkndrlllkllpklvrrLcnllteldpwlq 209
                  p+++++++d+++ v+++A+ ++++l     +pdl ++  ++ +++ +s  d  p +   A++  +++ + +  +l+ l+p+l+r L++  ++  +   
  CDO72527.1 177 IPKVEAAMHDTKAEVSSAAIKCATALCTTlaNPDLSPH--IPALVKCMSNPDavPAC-IKALSNTTFVaEVTAPALAVLVPLLIRALNDR-SMEVQRRT 271
                 56788899999999999999999999877668888766..89999999888854322.23333333332223333347777777777766.55555566 PP

                 HHHHHHHCC---SSHHHH CS
   Adaptin_N 210 vkiiklltrlarqepeer 227
                 v++i+ l +l+r +  ++
  CDO72527.1 272 VVVIDNLVKLVRDPNVAA 289
                 666666666666555444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.34   1.4e+02       4      20 ..     485     501 ..     484     511 .. 0.91
   2 ?    5.2   0.1     0.048        20       4      22 ..     727     745 ..     724     756 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.34
                 EE--SSSSHHHHHHHGG CS
       AAA_5   4 LvGppGtgKselaerla 20 
                 ++G  G+gKs+l+++l 
  CDO72527.1 485 ILGTNGSGKSTLMRQLR 501
                 589***********986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.048
                 EE--SSSSHHHHHHHGGGG CS
       AAA_5   4 LvGppGtgKselaerlaaa 22 
                 +vGp G gKs+l++ l   
  CDO72527.1 727 IVGPNGAGKSTLVKLLTGE 745
                 79************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1086 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              44  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.46
# Mc/sec: 7140.79
//
Query:       CDO72528.1  [L=405]
Description: hypothetical protein BN946_scf184983.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.7   1.3        2.1    8.8   0.7    2.5  2  SCIMP     SCIMP protein


Domain annotation for each model (and alignments):
>> SCIMP  SCIMP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.018   3.3e+02      17      70 ..      25      79 ..      21     113 .. 0.61
   2 ?    8.8   0.7   0.00011       2.1      60     101 ..     295     338 ..     278     364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.018
       SCIMP 17 ivvsvvlglilycvcrrllrqGkkweiakslkqkerdeekmyenvlnq.spvqlP 70
                i v v l  ++  v  +llr+ +k++  k     + d ek    v    +++++P
  CDO72528.1 25 ITVVVLLFNMILAVSFCLLRNRRKLKNHKRRVSASVDPEKCETSVALVvTADTVP 79
                3334444444456777888888888888877777777777766654331334455 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00011
       SCIMP  60 nvlnqspvqlPplPPrgllssedsspqetksqp..patyslvnk 101
                 n + +sp ++  lPP+ +++s+  sp+et+sq+  +++ysl + 
  CDO72528.1 295 NSNPHSPPRIEWLPPKMSTVSDMPSPRETNSQSslSTMYSLHEA 338
                 555667888889*****************999844688987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2863.90
//
Query:       CDO72529.1  [L=337]
Description: Auxilliary Activities Family 9 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-61  205.6   0.1    7.8e-61  205.6   0.1    1.4  2  Glyco_hydro_61  Glycosyl hydrolase family 61
     0.0054   16.7  12.4     0.0097   15.9  12.4    1.5  1  Mucin           Mucin-like glycoprotein
  ------ inclusion threshold ------
        2.1    6.9   9.6        2.7    6.6   9.6    1.0  1  Hamartin        Hamartin protein
        4.5    6.8   9.2        6.4    6.3   9.2    1.2  1  EVI2A           Ectropic viral integration site 2A protein (E


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   0.1   1.7e-64   7.8e-61       1     187 [.      23     216 ..      23     228 .. 0.91
   2 ?   -3.4   0.1       1.7   7.5e+03      61      61 ..     280     280 ..     248     315 .. 0.52

  Alignments for each domain:
  == domain 1  score: 205.6 bits;  conditional E-value: 1.7e-64
                     XEEEEEEEETTEEEE--.........TSSSB-B---SSS--BGGTTSCHHCCSTTB..--SSBEEEETTSEEEEEEESSC-TT--S-EEEEEEE- CS
  Glyco_hydro_61   1 Hgvvksltvngkeyegd.........pevvrwsrkakdngpvtdvtspdiaCnkag..paaavaevkaGdtvtfewkekwissHkGpvlvYlakc 84 
                     Hg+vk++ ++ ++y+++         p + r +r+  d+gpv dvtspdiaCnk+g   ++a a+++aGd++tf+w+ +w+++H+Gpv++Y+a+c
      CDO72529.1  23 HGYVKKYEIGSQTYPAWdpfndpyasPVPNRIERHIPDDGPVLDVTSPDIACNKGGetGVNAFATIAAGDKITFDWT-NWPADHQGPVSTYMASC 116
                     9*************99999******988899999*******************76633444559*************.7**************** PP

                     SSS-GTTT--GGGCEEEEEEEE-EETE-STEHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB.--. CS
  Glyco_hydro_61  85 asgddcktvdgsglkWfKideegldasakkWatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgtalpe. 178
                       ++dc+++d s++kWfKid +g+++  +kWa+++l++ng k++  iP++l++GeYl+RhEi+ALhs g   ++QfYp+Caq++Vtgsg++ p+ 
      CDO72529.1 117 --NGDCSKFDVSDAKWFKIDAAGYSN--GKWAATQLIDNGYKWTSVIPSELKAGEYLVRHEIVALHSVG---QPQFYPGCAQVKVTGSGSKEPSg 204
                     ..579*******************84..57*************************************85...8*****************77844 PP

                     ...EEGCCSS-T CS
  Glyco_hydro_61 179 ...vsfpgayka 187
                        vs+pg+y++
      CDO72529.1 205 selVSLPGLYNN 216
                     579*******87 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
                     E CS
  Glyco_hydro_61  61 v 61 
                      
      CDO72529.1 280 T 280
                     1 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  12.4   2.2e-06    0.0097      39     113 ..     243     319 ..     189     325 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
       Mucin  39 aegqskltttttttkpp.ttttttt.tasttittkttkattttttttttttateaPsdavttaeaPtttttrapsrl 113
                 ++g++++++t  + +p+ t++ +++ ++st + t tt++  t++  t + ++t + +++v+++  Pttt t   s  
  CDO72529.1 243 SSGSDDTDSTPASSTPAhTSSAAPEkASSTQVHTATTTSVHTSAPATSSQASTASRASSVASSSKPTTTGTGRCSAK 319
                 34444444443333333033333433445556667777766666666666666666777999999999987666654 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.6    0.0006       2.7     366     447 ..     242     326 ..     224     335 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0006
    Hamartin 366 sstpeaagkatpe.tTPakssrklppslsesavvvalpassrksspprkdeks..esskpdlskqeevenekeleeslkskssvt 447
                 ss  ++   +tp+ +TPa++s+ +p+++s+ +v++a+++s ++s+p  +++ s  +++++  s+++++++ ++  ++++++ +v+
  CDO72529.1 242 SSSGSDDTDSTPAsSTPAHTSSAAPEKASSTQVHTATTTSVHTSAPATSSQAStaSRASSVASSSKPTTTGTGRCSAKRRRGMVK 326
                 4444445788999899999999999999999999999999999999888888853333444555555555555555555666655 PP

>> EVI2A  Ectropic viral integration site 2A protein (EVI2A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.2    0.0014       6.4      56     126 ..     259     330 ..     237     336 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
       EVI2A  56 sntnpvtpevdkkskstetletetsspsvslapkseeelttpsvvrnsssttqstents.kskseifKkevC 126
                  +t++++pe +  ++  ++++t+++++ ++ ++++++    +sv+++s +tt++t++ s k ++ ++K+ v 
  CDO72529.1 259 AHTSSAAPEKASSTQVHTATTTSVHTSAPATSSQASTASRASSVASSSKPTTTGTGRCSaKRRRGMVKRHVS 330
                 23344444443333333333334455556666666667777889999999****998763777889998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2412.58
//
Query:       CDO72530.1  [L=259]
Description: hypothetical protein BN946_scf184983.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-17   61.8   4.0      7e-17   61.0   4.0    1.4  1  Homeodomain     Homeodomain
    3.2e-05   23.7   0.7    0.00011   22.0   0.1    2.3  2  Homeobox_KN     Homeobox KN domain
  ------ inclusion threshold ------
      0.044   13.6   0.0      0.077   12.9   0.0    1.3  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.064   13.1   0.4      0.085   12.7   0.4    1.1  1  Exo84_C         Exocyst component 84 C-terminal
        7.5    6.4  11.9         11    5.8  11.9    1.3  1  SPX             SPX domain


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   4.0     2e-20     7e-17       1      57 []     102     158 ..     102     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2e-20
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57 
                  ++kR +  +eql++L++ ++++  ps+eer eLAkklg++ r V++WFqN+R+ +++
   CDO72530.1 102 KKKRKRADAEQLKVLNETYNRTAFPSTEERVELAKKLGMSARSVQIWFQNKRQAMRQ 158
                  79***************************************************9996 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.5   5.5e+03       7      11 ..      77      81 ..      74      82 .. 0.76
   2 !   22.0   0.1   3.1e-08   0.00011       9      39 ..     124     154 ..     116     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
  Homeobox_KN  7 hnPYP 11
                   PYP
   CDO72530.1 77 ASPYP 81
                 67*** PP

  == domain 2  score: 22.0 bits;  conditional E-value: 3.1e-08
  Homeobox_KN   9 PYPseedKeeLlkeTglsvkqitnWFINaRr 39 
                   +Ps e++ eL+k+ g+s++ ++ WF N R+
   CDO72530.1 124 AFPSTEERVELAKKLGMSARSVQIWFQNKRQ 154
                  79***************************95 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.077      10      34 ..     130     154 ..     123     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
  YdaS_antitoxin  10 gqkaLAealgvsqqaVsqWlkgkkq 34 
                     ++++LA++lg+s + V+ W + k+q
      CDO72530.1 130 ERVELAKKLGMSARSVQIWFQNKRQ 154
                     6889****************99988 PP

>> Exo84_C  Exocyst component 84 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   2.4e-05     0.085      63     115 ..     112     164 ..     101     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
     Exo84_C  63 asklsrellsknevkklksnvslLirLgledkArelfLenrsnliqkrirqik 115
                 + k+ +e  +++ + +++++v+l  +Lg++ ++ +++++n+++++++ +rq  
  CDO72530.1 112 QLKVLNETYNRTAFPSTEERVELAKKLGMSARSVQIWFQNKRQAMRQSSRQAA 164
                 445667777788888999********************************976 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.9     0.003        11      62     152 ..     129     248 ..      92     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.003
         SPX  62 e.....................rtepstsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpa.... 135
                 e                     +++   +  a ++++++a as+s++ +++ s+p+++p+s s +++ sygg +ss   ++s s+ + s + +p+    
  CDO72530.1 129 EervelakklgmsarsvqiwfqNKR---Q--AMRQSSRQAAASASPTTSQPYSTPSHTPGSASLPPQGSYGGHPSSAMGSSSISQAGYSTPRPPSqmgg 222
                 3444555566666665555433111...2..22222223333333333333399999999999**************9999999999999999876666 PP

         SPX 136 .........dssssssssesesssss 152
                          +s+++ss+ +s +++++
  CDO72530.1 223 mhhpssrlnPSPNPSSHRRSHEEEQQ 248
                 66655443322222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2010.11
//
Query:       CDO72531.1  [L=525]
Description: hypothetical protein BN946_scf184983.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-17   63.0   0.0    4.4e-17   62.3   0.0    1.3  1  Pkinase      Protein kinase domain
    9.6e-06   25.1   0.0    1.5e-05   24.4   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
        1.1    8.9   5.2        1.7    8.3   5.2    1.2  1  PAP1         Transcription factor PAP1


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   7.3e-21   4.4e-17       2     107 ..     412     525 .]     411     525 .] 0.91

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 7.3e-21
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.......CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.......hpnivrlyevfeekdelylvleyveggeladllerk 92 
                 +kl+++G+G+fG+V  ++e++tg+ +A+K+++k ++  k +  +v++E  +l++ +        + iv+l+++f++ d+lylvley+ gg+l +ll ++
  CDO72531.1 412 VKLKTIGHGAFGVVSLVRERSTGQLFAMKQLRKTDMLRKGQeGHVRAERDLLRSASlastpgsAEWIVKLFYSFQDRDHLYLVLEYMGGGDLLNLLIER 510
                 6899*****************************99977766699*******999876665666678********************************* PP

                 SS--HHHHHHHHHHH CS
     Pkinase  93 gslseeeakkiakqi 107
                  +++e+ ++++++++
  CDO72531.1 511 DVFDEDFTRFYVAEV 525
                 **********99876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.6e-09   1.5e-05       4      95 ..     414     510 ..     411     520 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.6e-09
                  EEEEEEESSEEEEEEEEET......TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkg......ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrk 94 
                   k++G+GafG V   + ++       k+ ++++   K  + +   + +++ll+ a++ ++  + + ivkl     ++++l++v+ey+ gGdLl+ L +
   CDO72531.1 414 LKTIGHGAFGVVSLVRERStgqlfaMKQLRKTDMLRKGQEGHV--RAERDLLRSASLASTPgSAEWIVKLFYSFQDRDHLYLVLEYMGGGDLLNLLIE 509
                  689*********9988885444443333333333333332222..2368999999999999999******************************9977 PP

                  T CS
  Pkinase_Tyr  95 k 95 
                  +
   CDO72531.1 510 R 510
                  6 PP

>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.2   0.00029       1.7      94     185 ..     219     309 ..     191     344 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00029
        PAP1  94 nnnys.nsaanegltrgstassaesqsstysansgtstssdSPsssseshqgqlSScgTSPEPstqSPaakksketsstieeeevahttidge 185
                 + + s ++a ++++ r     s++++s ++ a  + ++ s SP s  ++ q+ +S    SP P + SP   ++ +++   ++   ah++ + e
  CDO72531.1 219 KPTPSsSDALSNQALRVVNGMSTTNSSVITTA--ARENVSLSPLSPITQPQSPNSPAQLSPSPVQLSPPLGQPGNSTIRWTSGLPAHPEHEQE 309
                 33334234444444444444444443333333..3344468***************************9998666553444445555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3758.86
//
Query:       CDO72532.1  [L=333]
Description: hypothetical protein BN946_scf184983.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-18   67.1   0.0    2.3e-18   66.5   0.0    1.1  1  Pkinase      Protein kinase domain
    1.3e-06   28.0   0.0    1.8e-06   27.5   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.11   13.2   0.0       0.28   11.9   0.0    1.7  1  Pkinase_C    Protein kinase C terminal domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   3.8e-22   2.3e-18     151     256 ..      72     167 ..      63     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 3.8e-22
                 SCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SS CS
     Pkinase 151 sskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkd 248
                 ++ + s++gt  Y++PEv+++++y+ ++D+WslGvi++e l+g ppf    ++   ++ ++q     kil+ ++++ +p +  +s+ea +l+++ll+ +
  CDO72532.1  72 RKLAYSVCGTNSYMSPEVIRGHGYTFSCDWWSLGVIMFECLYGFPPFV---SN--SRHVTRQ-----KILNwKQSLRFPSRPRVSHEAVNLMEQLLC-E 159
                 344889******************************************...22..2456666.....788878899********************8.5 PP

                 GCCSTTHH CS
     Pkinase 249 pkkRltae 256
                 p++Rl+ +
  CDO72532.1 160 PEDRLGSQ 167
                 88888755 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     3e-10   1.8e-06     170     242 ..      83     157 ..      67     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3e-10
                  GGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH...HTTEES-BBTTSBHHHHHHHHHHT CS
  Pkinase_Tyr 170 kWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl...kegkrlekpekcpeelyelmkkcw 242
                   +m+pE+++ + +t + D Ws Gv+++E +  g  p+ + + + + +k+   k++ r +    +++e  +lm++ +
   CDO72532.1  83 SYMSPEVIRGHGYTFSCDWWSLGVIMFECLY-GFPPFVSNSRHVTRQKIlnwKQSLRFPSRPRVSHEAVNLMEQLL 157
                  79**************************998.****9888777766666544777788888889999999999855 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.28       2      45 ..     229     284 ..     228     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
   Pkinase_C   2 esdeDtsNFDpeFTeedprdtppddm..............pagspltssvqenFrGFt 45 
                  s+eDt++FD++   e++  +                   + g+ l+  +  +F GFt
  CDO72532.1 229 RSPEDTRHFDDDIPPEPLAPANG--AaadatrdpllrdkvHGGEILEVRKALAFAGFT 284
                 79********9988888444444..345888888888888888888888889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2559.83
//
Query:       CDO72533.1  [L=678]
Description: Carbohydrate-Binding Module Family 1 / Glycoside Hydrolase Family 18 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-84  282.7   0.1    8.2e-84  282.0   0.1    1.2  1  Glyco_hydro_18  Glycosyl hydrolases family 18
    3.4e-13   49.3  13.0    7.4e-13   48.2  13.0    1.6  1  CBM_1           Fungal cellulose binding domain
  ------ inclusion threshold ------
       0.11   12.7   0.2       0.26   11.5   0.2    1.6  1  Phage_CII       Bacteriophage CII protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.0   0.1   1.4e-87   8.2e-84       3     312 .]     287     623 ..     286     623 .. 0.94

  Alignments for each domain:
  == domain 1  score: 282.0 bits;  conditional E-value: 1.4e-87
                     EEEEEGGGGGSSGC....SHTTTESEEEEEEEEEEETTTEEEESS.TTHH.................HHHHHHHHHHHHTSTT-EEEEEEEETTT CS
                     xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   3 vgYysswesygnny....lpsaklthiiyaFakidgengkvvvsd.wedl.................gnfeqlkklkkkknpgvkvllsiGGwtd 75 
                     vgY+ +w+ yg+++    +p ++lthi+yaFa++++++g+v++sd w+d                  gnf++l klk ++++++kv+lsiGGwt+
      CDO72533.1 287 VGYFVNWGIYGRKFppslIPVDNLTHILYAFANLKPDTGEVFLSDtWADQeihypgdswndqgknlyGNFKALYKLK-RDHRHLKVILSIGGWTY 380
                     8*********9864456799*********************************************************.***************** PP

                     TTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHH.HHHH.HTSTTCEEEEEEESSHHHHHHHCHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  76 ssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelreald.kaka.tegkkllLsaavpasasdlskgydlpk 168
                     s +f+ ++ ++a r kf++s ++ll+++g+DG+Did+eyp++ +e++++y++ll+elr+ald +a++  ++ ++lL++a+p+++++++k  ++++
      CDO72533.1 381 SPSFHPIVINPALRSKFVASSIRLLEDNGLDGLDIDYEYPQN-DEQARGYVQLLRELRQALDaHAQRkGANYRFLLTIAAPCGPDNYEKL-HVRD 473
                     ****************************************87.666****************766666667789************9999.**** PP

                     HHHHTSEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS........TSTTTEEEHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx RF
  Glyco_hydro_18 169 iakylDyvnvmtYDfhgswdnvtghhaplydaslnvdeavkeylkagvpakklvlGvpfygrawalvsgadn........tkeegvlsykelkel 255
                     + ++lD+ n+m+YDf gswd+v+gh+a++++  +++++a++ y+++gvp +k+v+G+p ygr++ +++g++          +e+gv++y++l+  
      CDO72533.1 474 MDQSLDFWNMMAYDFAGSWDQVAGHQANVFGGPISASQAINWYISQGVPRDKIVMGIPLYGRSFMNTEGPGRpfqgigpgSWEQGVYDYRALPL- 567
                     *****************************************************************999966699999999**********9998. PP

                     HTEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 256 lkkakakrkydskakapyvydge..efvsyDdpksikakadyvkakglgGvmiWsldqD 312
                        +++ +  d+k  a++ yd +  e++s+D+++  + k d++k+++l+G m+W+l++D
      CDO72533.1 568 ---PGSYVFQDEKLIASWSYDYQkkEMISFDNEQVGRWKGDWIKKEQLRGSMFWELSGD 623
                     ...4666667888888999999999********************************98 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2  13.0   1.2e-16   7.4e-13       1      29 []      24      52 ..      24      52 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.2e-16
       CBM_1  1 lwgQCGGigWtGpTtCvsgatCtyqNeyY 29
                +wgQCGGigWtG+TtC++g++Ct+qN yY
  CDO72533.1 24 VWGQCGGIGWTGSTTCTAGSVCTVQNAYY 52
                5**************************** PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   4.3e-05      0.26      30      51 ..     589     610 ..     578     624 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.3e-05
                 HHHHTSSTTTHHHHHHHHHHHH CS
   Phage_CII  30 aeaiGvdeskisrwktDwipka 51 
                  e+i  d+ ++ rwk+Dwi k 
  CDO72533.1 589 KEMISFDNEQVGRWKGDWIKKE 610
                 489****************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4609.48
//
Query:       CDO72534.1  [L=520]
Description: hypothetical protein BN946_scf184983.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2263  (0.12622); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.47
# Mc/sec: 3323.37
//
Query:       CDO72535.1  [L=516]
Description: hypothetical protein BN946_scf184983.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-18   65.3   0.0    9.3e-18   64.5   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.4e-05   24.1   0.1    0.00019   21.7   0.1    2.3  2  GTP_EFTU_D2  Elongation factor Tu domain 2
  ------ inclusion threshold ------
       0.12   12.1   0.2        1.3    8.8   0.0    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   1.6e-21   9.3e-18       4     188 ..     195     413 ..     192     452 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.6e-21
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...............................TTCSSEE CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...............................ketkkyl 71 
                 + ++++g vD+GK+T+++ L+  + ++ + +++      l ++k+E e g T ++    l                                ++++++ 
  CDO72535.1 195 VRCAVVGNVDSGKSTTLGVLTRGALDDGRGRARV----SLFRHKHEIESGRTSSVGMEILGfgpsgkpilpptahstdpetirreklgweeiSRQASKI 289
                 5799*****************8888877744433....4889999999998888776666688**************************976699999* PP

                 EEEEEESSSGGGHHHHHHH..HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH....HHHHHHH.HH CS
    GTP_EFTU  72 inliDtPGHvdFskevirg..lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk....eekleky.ge 162
                 i++ D  GH+ + k++  g       +++l+v  + G    ++e+l +al++ vp++v+i+K+D++  + l+++ve++++k        e+++++  ++
  CDO72535.1 290 ISFSDLAGHERYLKTTLYGltSGSPSCVILIVGGNAGLIGMSKEHLAIALALSVPVVVCITKIDMTpPNILEKTVEQISRKTPVFvksmETAVTVSqAF 388
                 *******************4444689****************************************877788888888888744444442222222244 PP

                 TTTTTEEEEEEBTTTTBTHHHHHHHH CS
    GTP_EFTU 163 kgekevpvvfgSalkgegvktlleal 188
                  +e+  pv+  S ++geg++ l +++
  CDO72535.1 389 GKERLAPVFQLSNVTGEGLDYL-RTF 413
                 44489************99833.333 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.3   7.6e+03      37      57 ..     308     328 ..     298     333 .. 0.73
   2 !   21.7   0.1   3.2e-08   0.00019       1      42 [.     447     487 ..     447     498 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                  EEEEETEEESEEETTSEEEEE CS
  GTP_EFTU_D2  37 sletfhededeavaganaGvi 57 
                  +l    + + ++++g+naG+i
   CDO72535.1 308 GLTSGSPSCVILIVGGNAGLI 328
                  555555667778999999998 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 3.2e-08
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEET CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfh 42 
                  Gtv++g++ sG ++ Gd v ++++ +++ ++ t+++s+e+ +
   CDO72535.1 447 GTVIDGIINSGSIRAGDAVLFGPD-SNGNFHATTVKSIERKR 487
                  9********************884.347779********984 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.051   3.1e+02       1      18 [.     199     216 ..     199     230 .. 0.81
   2 ?    8.8   0.0   0.00022       1.3     148     233 ..     334     412 ..     324     416 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.051
  ATP_bind_1   1 vvGpaGsGKttfvgalse 18 
                 vvG + sGK+t  g l+ 
  CDO72535.1 199 VVGNVDSGKSTTLGVLTR 216
                 89*********9998876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00022
  ATP_bind_1 148 alsamlrlelPhvvvlnkfDllkek.lekeleffedvealslllekee..ekykklaeaiaelleefalvlrflplssekeesiedlls 233
                  l++ l l++P vv+++k+D+   + lek +e ++          k+    k  + a ++++++ +  l   +++ls+ ++e++++l +
  CDO72535.1 334 HLAIALALSVPVVVCITKIDMTPPNiLEKTVEQIS---------RKTPvfVKSMETAVTVSQAFGKERLA-PVFQLSNVTGEGLDYLRT 412
                 578999***************88667666666655.........23333445556777888888888888.777788888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 3922.57
//
Query:       CDO72536.1  [L=540]
Description: hypothetical protein BN946_scf184983.g19, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-09   37.4   1.3    3.6e-07   30.4   0.4    2.4  2  zf-RING_2     Ring finger domain
    3.3e-08   33.7   0.6    3.1e-07   30.6   0.1    2.2  2  zf-rbx1       RING-H2 zinc finger domain
    1.5e-07   31.1   0.1    0.00019   21.1   0.0    2.5  2  zf-RING_11    RING-like zinc finger
    2.6e-07   30.3   4.7    7.9e-07   28.8   1.6    2.4  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    2.3e-06   27.3   0.2    2.7e-05   23.9   0.0    2.2  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    4.8e-05   23.3   1.7     0.0031   17.5   0.3    2.6  2  zf-RING_UBOX  RING-type zinc-finger
    0.00018   21.4   0.6    0.00047   20.1   0.1    1.8  2  zf-RING_5     zinc-RING finger domain
    0.00035   20.4   0.5     0.0008   19.2   0.5    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
    0.00066   19.7   0.3     0.0032   17.5   0.1    2.0  2  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
      0.029   14.7   0.8      0.056   13.8   0.8    1.4  1  zf-RING-like  RING-like domain
      0.031   14.1   2.2      0.049   13.5   0.5    1.9  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
        0.1   12.4   0.1        0.1   12.4   0.1    1.6  1  zf-RING_4     RING/Ubox like zinc-binding domain
       0.17   11.9   1.5       0.59   10.2   1.3    2.0  2  zf-C3H2C3     Zinc-finger
       0.21   11.8   1.6       0.56   10.4   0.5    2.2  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.22   11.2   3.8        0.1   12.2   1.1    1.7  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
       0.38   10.7   1.5       0.95    9.4   1.5    1.6  1  PHD           PHD-finger
       0.54   10.5   4.7       0.85    9.8   1.8    2.4  2  FANCL_C       FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.02        21       3      17 ..     423     437 ..     421     440 .. 0.86
   2 !   30.4   0.4   3.4e-10   3.6e-07      14      44 .]     491     522 ..     483     522 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.02
   zf-RING_2   3 CpICleelssadsvl 17 
                 C+ICl++++ +++v+
  CDO72536.1 423 CAICLMDFEAPKRVR 437
                 ********9988775 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 3.4e-10
   zf-RING_2  14 dsvlllpCgHvfhreClerwlrssst.CPlCr 44 
                 + ++ll CgH fh+ C++ wl++ s  CP+C+
  CDO72536.1 491 QPLRLLSCGHAFHQPCVDPWLTNVSGrCPTCQ 522
                 4466779*************7655445****5 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.54   5.7e+02       2      13 ..     422     433 ..     421     444 .. 0.86
   2 !   30.6   0.1   2.9e-10   3.1e-07      25      55 .]     491     522 ..     469     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.54
     zf-rbx1   2 tCaiCrneleea 13 
                  CaiC + +e++
  CDO72536.1 422 VCAICLMDFEAP 433
                 6*****999865 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 2.9e-10
     zf-rbx1  25 cpvvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                  p+ l +CgHaFH+ C++ Wl++ + +CP+c+
  CDO72536.1 491 QPLRLLSCGHAFHQPCVDPWLTNvSGRCPTCQ 522
                 4666779****************999*****6 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.003       3.2       2      13 ..     423     434 ..     423     439 .. 0.80
   2 !   21.1   0.0   1.8e-07   0.00019      12      29 .]     490     507 ..     483     507 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.003
  zf-RING_11   2 CsICLeefkpgq 13 
                 C+ICL +f+  +
  CDO72536.1 423 CAICLMDFEAPK 434
                 ********9655 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.8e-07
  zf-RING_11  12 gqalfilpCsHtFHfkCI 29 
                  q l++l+C+H+FH+ C+
  CDO72536.1 490 AQPLRLLSCGHAFHQPCV 507
                 5899*************7 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1       0.2   2.1e+02       2      14 ..     423     435 ..     422     438 .. 0.83
   2 !   28.8   1.6   7.5e-10   7.9e-07      11      40 .]     491     521 ..     489     521 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.2
  zf-C3HC4_2   2 CpiCldmlkdpsv 14 
                 C+iCl  ++ p +
  CDO72536.1 423 CAICLMDFEAPKR 435
                 *****99998865 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 7.5e-10
  zf-C3HC4_2  11 dpsvvtpCgHvfCqkCilrsLeekn.eCPlC 40 
                 +p+++  CgH f+q C++++L++ + +CP+C
  CDO72536.1 491 QPLRLLSCGHAFHQPCVDPWLTNVSgRCPTC 521
                 5888999****************999***** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.38   4.1e+02       1      12 [.     423     434 ..     423     444 .. 0.88
   2 !   23.9   0.0   2.5e-08   2.7e-05      10      41 .]     491     521 ..     471     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.38
                 -TTT-S--SS-E CS
    zf-C3HC4   1 CpiCleeakepn 12 
                 C+iCl  ++ p+
  CDO72536.1 423 CAICLMDFEAPK 434
                 *****9998876 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.5e-08
                 S-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  10 epnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 +p +ll C+H+f+++C++ +l  + +  CP+C
  CDO72536.1 491 QPLRLLSCGHAFHQPCVDPWLT-NVSGRCPTC 521
                 66789*****************.67777**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.034        36       1      11 [.     423     433 ..     423     439 .. 0.87
   2 !   17.5   0.3     3e-06    0.0031      10      38 ..     491     518 ..     477     530 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.034
  zf-RING_UBOX   1 CpIClelftdP 11 
                   C ICl +f+ P
    CDO72536.1 423 CAICLMDFEAP 433
                   *********99 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3e-06
  zf-RING_UBOX  10 dPlvl.pCGHtFCreCl..welskslegafkC 38 
                   +Pl l +CGH F+++C+  w      + + +C
    CDO72536.1 491 QPLRLlSCGHAFHQPCVdpW----LTNVSGRC 518
                   6834449**********655....33333344 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.2   3.4e+03      36      42 ..     420     426 ..     415     432 .. 0.74
   2 !   20.1   0.1   4.4e-07   0.00047      13      43 ..     491     522 ..     481     523 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
   zf-RING_5  36 eavCpiC 42 
                 +avC iC
  CDO72536.1 420 RAVCAIC 426
                 5677777 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 4.4e-07
   zf-RING_5  13 ekfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 ++  l+sCgH f++ C++  l + + +Cp+C+
  CDO72536.1 491 QPLRLLSCGHAFHQPCVDPWLtNVSGRCPTCQ 522
                 56889**************99999*******8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.5   7.6e-07    0.0008      11      41 ..     493     526 ..     486     530 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.6e-07
  Prok-RING_4  11 ailepCgHlvCkeCfdsk..dls.sCPlCqrris 41 
                   +l +CgH + + C d +  + s +CP Cqr ++
   CDO72536.1 493 LRLLSCGHAFHQPCVDPWltNVSgRCPTCQRPVE 526
                  6799**************655559******9875 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   1.6e+03      21      32 ..     420     431 ..     406     435 .. 0.83
   2 !   17.5   0.1     3e-06    0.0032      46      83 ..     492     527 ..     486     529 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
                 SSB-TTT-SBTT CS
  zf-ANAPC11  21 ddvcGicrvsfd 32 
                   vc ic ++f+
  CDO72536.1 420 RAVCAICLMDFE 431
                 569999999997 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3e-06
                 -EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB--B CS
  zf-ANAPC11  46 plvlGkckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                 pl l +c h+fh+ c+  wl +  + g+cp c++ ++l
  CDO72536.1 492 PLRLLSCGHAFHQPCVDPWLTN--VSGRCPTCQRPVEL 527
                 677889**************75..7799****987665 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   5.3e-05     0.056      18      43 .]     497     521 ..     495     521 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-05
  zf-RING-like  18 sCnvrlHvdCfqhyirthsskkCpkC 43 
                   sC  ++H+ C++  + t++s +Cp+C
    CDO72536.1 497 SCGHAFHQPCVDPWL-TNVSGRCPTC 521
                   7*************9.********** PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.5   1.6e+03       4       9 ..     422     427 ..     415     434 .. 0.61
   2 ?   13.5   0.5   4.7e-05     0.049      17      48 ..     495     526 ..     490     527 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.5
                 B-TTTS CS
  zf-C3HC4_3   4 eCviCl 9  
                  C iCl
  CDO72536.1 422 VCAICL 427
                 344443 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.7e-05
                 ETTEEEEEE-HHHHHHHHH.TT-B-TTT--B-- CS
  zf-C3HC4_3  17 llpCgHlvlCeeCaekllk.rkkkCpiCrrpie 48 
                 ll CgH  + + C++ +l   + +Cp C+rp+e
  CDO72536.1 495 LLSCGHA-FHQPCVDPWLTnVSGRCPTCQRPVE 526
                 789****.9********9999**********97 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.7e-05       0.1      19      46 ..     497     524 ..     482     526 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.7e-05
   zf-RING_4  19 eCgyqiClfCyhrileeeegrCPaCree 46 
                 +Cg+ + + C +  l++ +grCP C+++
  CDO72536.1 497 SCGHAFHQPCVDPWLTNVSGRCPTCQRP 524
                 7************************987 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         4   4.2e+03       9      25 ..     410     426 ..     408     431 .. 0.70
   2 ?   10.2   1.3   0.00056      0.59      16      34 ..     497     521 ..     491     522 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4
   zf-C3H2C3   9 dypfvaysCkHlvHakC 25 
                 +ypfv    +  v a C
  CDO72536.1 410 EYPFVRLEGNRAVCAIC 426
                 58888777766666666 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00056
   zf-C3H2C3  16 sCkHlvHakCadeev......CPkC 34 
                 sC H +H+ C+d+        CP+C
  CDO72536.1 497 SCGHAFHQPCVDPWLtnvsgrCPTC 521
                 9***********9533334449999 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.8e+03       1      11 [.     423     433 ..     416     436 .. 0.75
   2 ?   10.4   0.5   0.00053      0.56      14      42 .]     496     521 ..     491     521 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
  zf-C3HC4_4   1 CPiCldYLekP 11 
                 C iCl  +e P
  CDO72536.1 423 CAICLMDFEAP 433
                 77777666666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00053
  zf-C3HC4_4  14 leCGhsfClsCisslqkepdgeqllCplC 42 
                 l+CGh f + C++ +  + +g    Cp C
  CDO72536.1 496 LSCGHAFHQPCVDPWLTNVSGR---CPTC 521
                 79***************99885...**99 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.9   4.2e+03      12      24 ..     414     426 ..     410     428 .. 0.72
   2 ?   12.2   1.1   9.7e-05       0.1      23      47 ..     497     520 ..     494     522 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.9
  Zn_ribbon_17  12 lavkgrvvlcgvC 24 
                   ++++g+  +c  C
    CDO72536.1 414 VRLEGNRAVCAIC 426
                   5667777778777 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.7e-05
  Zn_ribbon_17  23 vCeHvlHasCarewfenddlaeCps 47 
                   +C+H  H+ C++ w++n   + Cp+
    CDO72536.1 497 SCGHAFHQPCVDPWLTNVS-GRCPT 520
                   7****************99.99996 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.5    0.0009      0.95      20      50 ..     497     522 ..     496     524 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0009
                 TTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD  20 gCkrwfHqkClkppleseekpegewlCekCk 50 
                 +C+++fHq C++p l+  +++     C++C+
  CDO72536.1 497 SCGHAFHQPCVDPWLT--NVSG---RCPTCQ 522
                 6*************99..5555...799997 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       9.4   9.9e+03       5      11 ..     423     429 ..     420     435 .. 0.76
   2 ?    9.8   1.8    0.0008      0.85      27      67 ..     497     527 ..     494     530 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.4
                 -SSS--S CS
     FANCL_C   5 CgiCyay 11 
                 C iC+  
  CDO72536.1 423 CAICLMD 429
                 9999875 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0008
                 T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG CS
     FANCL_C  27 kCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyCkkkisv 67 
                 +C++ fH+ C+  Wl ++           G+CP C++++++
  CDO72536.1 497 SCGHAFHQPCVDPWLTNV----------SGRCPTCQRPVEL 527
                 7*************9864..........5999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3512.86
//
Query:       CDO72537.1  [L=362]
Description: Class II peroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-31  106.1   4.8    1.5e-30  104.9   1.6    2.4  2  Peroxidase_ext  Fungal peroxidase extension region
    2.9e-29  102.4   0.0      5e-29  101.6   0.0    1.4  1  peroxidase      Peroxidase


Domain annotation for each model (and alignments):
>> Peroxidase_ext  Fungal peroxidase extension region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.032   2.8e+02       6      36 ..       9      39 ..       5      52 .. 0.76
   2 !  104.9   1.6   1.7e-34   1.5e-30       1      77 [.     287     362 .]     287     362 .] 0.98

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.032
  Peroxidase_ext  6 FkaamakLallGqdrskLidCSdvipvpkpa 36
                    F +++a L +      + + CSd + +++ a
      CDO72537.1  9 FVSVLAALGVANGAITRRVTCSDGVNTATNA 39
                    55666666666666666789*****999876 PP

  == domain 2  score: 104.9 bits;  conditional E-value: 1.7e-34
  Peroxidase_ext   1 kmassFkaamakLallGqdrskLidCSdvipvpkpavnkpatfPagttpkdleltCateaFPtLtvdpGattslipv 77 
                     k++s+Fkaa+ k+++lG+d+s+LidCS+++p+p p++++ a+fPag++++d+e++Ca+++FPtL++dpG++ts++pv
      CDO72537.1 287 KLQSAFKAAFRKMTVLGHDESQLIDCSELVPTPPPPAST-AHFPAGLSNADIEQACASTPFPTLPTDPGPVTSVAPV 362
                     6899*********************************99.***********************************97 PP

>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   5.6e-33     5e-29       1     228 [.      47     283 ..      47     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 5.6e-33
                 HHHHHHHCCCCTTTHCH...HHHHHHHHHHTT.............SSTTSCHHH.TCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHH CS
  peroxidase   1 vrafvkaalkadrdmgp...sllrlafhdcfv.............gGcdgsvll.lepektapaNaslrkgldvldaikakleaacpgvvScADliala 82 
                 vr+++++ l + +++g    + lrl+fhd++              gG+dgs+ +  + e + +aN +++   +++d+ k  ++++    +S AD+i++a
  CDO72537.1  47 VRDDIQQNLFDGGECGEdvhESLRLTFHDAIGisqsatsrgqfggGGADGSIAIfEDIETNFHANLGVD---EIIDEQKPFVQRS---NISTADFIQFA 139
                 5777888888888888844455*******88888888899999999******883555666999*****...8888888888774...5********** PP

                 HHHHHHCT.T--..--EE---S-SSGGGS-S...-.-TS-HHHHHHHHHHHT.--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HHS CS
  peroxidase  83 ardavela.ggplvpvslGRrDatessasevsnlPdptasvdelrdkfarkg.ltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCasg 179
                 ++ +v+++ g p  +v lGR Dat++       +P+p+++vd ++++fa+ g +t+ee+vaL+ +Hti +a              ++d+++ ++     
  CDO72537.1 140 GAIGVSNCpGAPQLDVFLGRADATQPAPDLT--VPEPFDTVDSILARFADAGnFTPEEVVALLVSHTIAAAD-------------HVDPTIPGT----- 218
                 ********888877*************9533..6*********9999977766*******************.............466777764..... PP

                 .........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCCC CS
  peroxidase 180 ntelvdld.tptkfdnsyfknlle....................krgllrsDqvllsdsetralvekyae 228
                      ++d tp+ fd+++f +++                     +++ l+sD +l++ds+t++ ++++ +
  CDO72537.1 219 -----PFDsTPELFDTQFFIETQLrgtlfpgtggnqgevesplaGELRLQSDSELARDSRTACEWQSFVN 283
                 .....7888***********99999**************************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2725.38
//
Query:       CDO72538.1  [L=372]
Description: Class II peroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-27   95.0   1.2    4.1e-27   93.9   1.2    1.6  1  Peroxidase_ext  Fungal peroxidase extension region
    8.2e-24   84.6   0.0    1.6e-23   83.6   0.0    1.5  1  peroxidase      Peroxidase


Domain annotation for each model (and alignments):
>> Peroxidase_ext  Fungal peroxidase extension region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   1.2   4.6e-31   4.1e-27       3      78 ..     291     365 ..     289     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 4.6e-31
  Peroxidase_ext   3 assFkaamakLallGqdrskLidCSdvipvpkpavnkpatfPagttpkdleltCateaFPtLtvdpGattslipvc 78 
                     ++ F+ +++ L++lGqd ++L+dC +v+p+p p+v++ a+fPag+t++d+e++Ca ++FPtL+++pG++ts+++++
      CDO72538.1 291 QQMFQFVFHDLSILGQDINQLVDCTEVVPIPAPPVGQ-AHFPAGLTHADIEQACADTPFPTLPTAPGPKTSVASIP 365
                     789**********************************.***********************************987 PP

>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.7e-27   1.6e-23       2     227 ..      48     284 ..      47     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.7e-27
                 HHHHHHCCCCTTTHCH...HHHHHHHHHHTT.............SSTTSCHHH.TCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHH CS
  peroxidase   2 rafvkaalkadrdmgp...sllrlafhdcfv.............gGcdgsvll.lepektapaNaslrkgldvldaikakleaacpgvvScADlialaa 83 
                 r+++++ l + +++ +   + lrl+fhd+++             gG+dgs+ + ++ e + ++N +l++++++ +++ a+++      +S+AD+i++a+
  CDO72538.1  48 RDDLQENLFHGGQCTAeahEALRLTFHDAIAispaleaqgkfggGGADGSIAIfSDIETNFHPNIGLDEVVEMQKPFIARHN------LSVADFIQFAG 140
                 566666666666666633466*******99999**********99******8857778889******************999......8********** PP

                 HHHHHCTT--...--EE---S-SSGGGS-S...-.-TS-HHHHHHHH...HHHT--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HH CS
  peroxidase  84 rdavelaggp.lvpvslGRrDatessasevsnlPdptasvdelrdkf...arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCas 178
                 + +v++++g       +GR+Dat++    +  +P+p+++ d++ d+    ++  +++  +v+L+ aHt+ +a+              +d++ +      
  CDO72538.1 141 AIGVSNCAGApQLSAFVGRKDATQPAPDGL--VPEPFHTPDQIFDRLadaSQGEFDPILTVWLLTAHTVAAAN-------------DVDPTRS------ 218
                 *******555477**************777..7*********99998342344599999**************.............3344433...... PP

                 S.........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCC CS
  peroxidase 179 gntelvdld.tptkfdnsyfknlle....................krgllrsDqvllsdsetralvekya 227
                       ++d tp+ +d+++f++++                     +++ l+sD  +++ds+t++ ++++ 
  CDO72538.1 219 ----GLPFDsTPELWDTQFFVETQLrgtsfpgsggnqgevesalaGELRLQSDHTIARDSRTACEWQSFV 284
                 ....468899************9999*************************************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2812.14
//
Query:       CDO72539.1  [L=369]
Description: Class II peroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-26   92.1   1.2    3.9e-26   90.8   1.2    1.7  1  Peroxidase_ext  Fungal peroxidase extension region
    8.5e-21   74.7   0.1    2.1e-20   73.4   0.0    1.7  2  peroxidase      Peroxidase


Domain annotation for each model (and alignments):
>> Peroxidase_ext  Fungal peroxidase extension region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   1.2   4.3e-30   3.9e-26       3      78 ..     291     365 ..     289     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 4.3e-30
  Peroxidase_ext   3 assFkaamakLallGqdrskLidCSdvipvpkpavnkpatfPagttpkdleltCateaFPtLtvdpGattslipvc 78 
                     +  F+ +++ +++lGqd ++L+dC +v+pvp p+++  a+fPag+t +d++++Ca ++FPtL++dpG++ts++pv+
      CDO72539.1 291 QAMFQFVFHDMSILGQDINSLVDCTEVVPVPAPVQGV-AHFPAGLTIDDVNIACAETPFPTLPTDPGPATSVAPVP 365
                     568**********************************.************************************98 PP

>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.38   3.4e+03      55      86 ..      10      40 ..       5      43 .. 0.70
   2 !   73.4   0.0   2.4e-24   2.1e-20       2     228 ..      48     285 ..      47     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.38
                HHHHHHHHHHCTT.....S-HHHHHHHHHHHH CS
  peroxidase 55 ldvldaikakleaacpgvvScADlialaarda 86
                + ++ + + ++ a  ++ vSc D +  a+++a
  CDO72539.1 10 FTLVATLQGAFAA-LTRRVSCPDGVNTATNAA 40
                5555666666665.455799999999998887 PP

  == domain 2  score: 73.4 bits;  conditional E-value: 2.4e-24
                 HHHHHHCCCCTTTHCHHH...HHHHHHHHTT.............SSTTSCHHH.TCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHH CS
  peroxidase   2 rafvkaalkadrdmgpsl...lrlafhdcfv.............gGcdgsvll.lepektapaNaslrkgldvldaikakleaacpgvvScADlialaa 83 
                 r+++++ l + +++ ++    lrl+fhd+++             gG+dgs+ + ++ e   ++N +l++ +++ +++ a+++      +S+AD+i++a+
  CDO72539.1  48 RDDLQQNLFQGGQCTAEAhesLRLTFHDAIAispaleaqgifggGGADGSIAIfSDIETGFHPNIGLDEIVELQKPFIARHN------LSVADFIQFAG 140
                 667777777777777744445********9999**********99******8846666679*******************99......8********** PP

                 HHHHHCT.T--..--EE---S-SSGGGS-S...-.-TS-HHHHHHHH...HHHT--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HH CS
  peroxidase  84 rdavela.ggplvpvslGRrDatessasevsnlPdptasvdelrdkf...arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCas 178
                 + + +++ g p     +GR Dat++    +  +P+p+++ d++ ++    ++  +++  +v+L+ aHt+ +a+              +d+++ ++    
  CDO72539.1 141 AIGASNCaGAPQLAAFVGRVDATKPAPDGL--VPEPFHTPDQIFARLadaSQGEFDEILTVWLLVAHTVAAAN-------------DVDPTVPGS---- 220
                 ******9455577**************777..7*********766652424445888899*************.............566677664.... PP

                 S.........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCCC CS
  peroxidase 179 gntelvdld.tptkfdnsyfknlle....................krgllrsDqvllsdsetralvekyae 228
                       ++d tp+ +d+++f ++l                     + + l+sD ++++d++ ++ ++++ +
  CDO72539.1 221 ------PFDsTPEIWDTQFFIETLLngttfpgtannqgevaaplkGLLRLQSDFAIARDNRSACEWQSFVN 285
                 ......8898**********998888******************9999************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2997.98
//
Query:       CDO72540.1  [L=349]
Description: Class II peroxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-25   88.2   0.1    4.6e-25   87.4   0.1    1.5  1  Peroxidase_ext  Fungal peroxidase extension region
    2.2e-21   76.6   0.0      3e-21   76.2   0.0    1.2  1  peroxidase      Peroxidase


Domain annotation for each model (and alignments):
>> Peroxidase_ext  Fungal peroxidase extension region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.1   5.1e-29   4.6e-25       3      77 ..     276     349 .]     274     349 .] 0.97

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 5.1e-29
  Peroxidase_ext   3 assFkaamakLallGqdrskLidCSdvipvpkpavnkpatfPagttpkdleltCateaFPtLtvdpGattslipv 77 
                        F+ +++ L++lGqd ++L+dC +v+pvpkp+v++ ++fPag+t +d++ +Ca ++FP L++dpG+ ts++pv
      CDO72540.1 276 HDMFQFVFHDLSILGQDINSLVDCTEVVPVPKPVVGR-THFPAGLTIRDVNHACAETPFPVLPTDPGPRTSVAPV 349
                     578**********************************.***********************************97 PP

>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   3.3e-25     3e-21       2     228 ..      33     270 ..      32     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 3.3e-25
                 HHHHHHCCCCTTTHCHHH...HHHHHHHHTT.............SSTTSCHHH.TCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHH CS
  peroxidase   2 rafvkaalkadrdmgpsl...lrlafhdcfv.............gGcdgsvll.lepektapaNaslrkgldvldaikakleaacpgvvScADlialaa 83 
                 r+++++ l + +++ ++    lrl+fhd+++             gG+dgs+ + +e e   ++N +l++ ++  +++ ++++      +++AD+i++a+
  CDO72540.1  33 REDLQKNLFDGGQCNAEAhesLRLTFHDAIAispaleaqgkfggGGADGSIAIfSEIETGFHPNIGLDEIVEKQRPFINRHN------LGVADFIQFAG 125
                 677777777877777744445*******99999**********99******884667777********77777777777776......8********** PP

                 HHHHHCT.T--..--EE---S-SSGGGS-S...-.-TS-HHHHHHHH...HHHT--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HH CS
  peroxidase  84 rdavela.ggplvpvslGRrDatessasevsnlPdptasvdelrdkf...arkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCas 178
                 + + +++ g p     +GR+Dat++    +  +P+p+++ d++ d+    ++  +++  +v+L+ aHt+ +a+              +d+++ ++    
  CDO72540.1 126 AIGASNCpGAPQLAAFVGRKDATQPAPDGL--VPEPFHTPDQIFDRLadaSQGEFDPILTVWLLTAHTVAAAN-------------DVDPTIPGS---- 205
                 *******888877**************777..7*********99998342344599999**************.............567777765.... PP

                 S.........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCCC CS
  peroxidase 179 gntelvdld.tptkfdnsyfknlle....................krgllrsDqvllsdsetralvekyae 228
                       ++d tp+ fd+++f++++                     +++ l+sD  +++d++t++ ++++ +
  CDO72540.1 206 ------PFDsTPGVFDSQFFVETTLqgtlfpgdgpnqgevksplrGEMRLQSDFLIARDNRTACEWQSFIN 270
                 ......8888***********99989*************************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2800.77
//
Query:       CDO72541.1  [L=502]
Description: hypothetical protein BN946_scf184983.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-158  528.6   0.0   1.4e-158  528.3   0.0    1.0  1  Peptidase_C1_2  Peptidase C1-like family
    7.6e-07   29.4   0.0      0.018   15.1   0.0    2.4  2  Peptidase_C1    Papain family cysteine protease
     0.0064   15.7   0.0       0.01   15.0   0.0    1.2  1  Phage_portal_2  Phage portal protein, lambda family


Domain annotation for each model (and alignments):
>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.3   0.0  2.3e-162  1.4e-158       2     438 .]      49     499 ..      48     499 .. 0.95

  Alignments for each domain:
  == domain 1  score: 528.3 bits;  conditional E-value: 2.3e-162
                     S-HHHHHHHHHHHCTSHHHHHHHHHHTTS-HHHHHB-HHHHHH-----SEE-SS-..S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HH CS
  Peptidase_C1_2   2 ltkeklekfskefkadpknkvianaakksglleallnkkvkkelervFstevetd..evtnqkqsGRCWlFaalnvlRlkllkklklkefelsqa 94 
                     l+ +++++++  + + pk +++++ +++s++ eal +++++ ++ +vF+ e++    ++tnqk+sGRCWlFa++nvlR++++kkl+l +f+lsqa
      CDO72541.1  49 LSLSNIDAWEDAVDQSPKLQLARTILNHSNIREALVSRSAQIADAHVFNLELDFKtaPITNQKSSGRCWLFATTNVLRYNVMKKLNLADFQLSQA 143
                     67899********************************************99975555************************************** PP

                     HHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHH-TT-S-B-HHHHHHHHHHH---BGGGS-S-CHHHBHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_C1_2  95 ylffwDklEkanyFleniietadepldsRlvkfllatpqqDGGqwdmlvslvekyGvvPkkvypesfnseasrelnelLnkklrkdaleLRklve 189
                     ylffwDkl+k+ny+le  i+ ad p+d+Rl+ +l ++  +DGGqwdm+v+l+e yGvvP+ +ypes +s+ s+ +n+lL++klr++al+LR+l +
      CDO72541.1 144 YLFFWDKLNKSNYYLELSIQHADLPVDDRLIYHLSDDLISDGGQWDMVVNLLETYGVVPQPAYPESLHSSLSSPINTLLKTKLREHALILRDLSA 238
                     *******************************************************************************************9977 PP

                     TTTTCH.........HHHHHHHHHHHHHHHHHHHHC---S...SSEEEEEE-TTS-EEEEEEE-HHHHHHHCTT..S-CCCEEEEE--T-TTS-T CS
  Peptidase_C1_2 190 egkdke.........eieakkeelleeifrllaialgePp...ktFdfeyrdkdknyhkekdltpkeFyekyvk..ldledkvslinaPtadkpy 270
                     + ++++         ++++kkeell+e++ +++ +lg Pp   ++F+++y+dkd +  + ++ tp+eFy+ ++       d  slin+P  +++y
      CDO72541.1 239 SLRTNSalseqailaTLRSKKEELLQEVYVVMSATLGVPPrpnEKFTWDYYDKDGKAGSWNG-TPLEFYKAFAYdkYSPADSFSLINDP--RNEY 330
                     65444311111111156789*******************98889***************999.*******977545999**********..99** PP

                     TEEEEETT--SSTT---EEEEE--HHHHHHHHHHHHHTT--EEEEE-TTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTS----EEEEE CS
  Peptidase_C1_2 271 nklytvellgnvvggrkvlylnvevevlkklviaqlkdgeavwFGsdvgkemdrktGlldldlykleelldvdlklskAerldygeslmtHamvl 365
                     +klytv+ lgn+ ggr+vly+n+e+e lk++v++qlk+g  v+FG+dvg+ +dr +G++d+ l+++e+++d+++ l+kA+rl+++es mtHamv+
      CDO72541.1 331 GKLYTVDKLGNIWGGRPVLYVNTEIENLKQAVVKQLKAGHPVFFGCDVGQFSDRVQGIMDTALFEYEATFDIKFGLTKADRLRTNESSMTHAMVI 425
                     *********************************************************************************************** PP

                     EEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEHHHHHHHEEEEEEEGGGS-HHHHHHHHS.--EEE-TTSCCC CS
  Peptidase_C1_2 366 tgvdvdddgkvtkwkvEnsWGedsGekGyfvmsdewfdeyvyevvvdkkylpeellealee.epivLeaWDplg 438
                      gv++d+ g++ ++kvEnsWG+  G+kGyfvmsd+wf+++vy+vv+ k   p el +++ee e +vL++WDp+g
      CDO72541.1 426 SGVHLDAAGRPVRYKVENSWGDAVGDKGYFVMSDAWFEQFVYQVVIPKALAPRELVKVFEEgEKQVLPPWDPMG 499
                     ************************************************************999**********8 PP

>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.9e-05      0.18      15      53 ..     105     143 ..      97     153 .. 0.87
   2 !   15.1   0.0   3.1e-06     0.018     159     201 ..     414     458 ..     353     466 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
                   G---B-TSSBTHHHHHHHHHHHHHHHHHHSSS---B-HH CS
  Peptidase_C1  15 tpvkdqgsCGsCWafsavgaledrlaiktkkklvslSeq 53 
                    p+ +q+s G CW f+++++l   ++ k +   ++lS+ 
    CDO72541.1 105 APITNQKSSGRCWLFATTNVLRYNVMKKLNLADFQLSQA 143
                   699*******************99999998888888876 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.1e-06
                   CETSS-EEEEEEEEEEEET..TEEEEEEE-SBTTTSTBTTEEEEE CS
  Peptidase_C1 159 csktelnhavlivGygven..gkkyWivkNsWgtdwgekGYiria 201
                    ++++++ha++i G   +   +   + v NsWg+  g+kGY+ ++
    CDO72541.1 414 TNESSMTHAMVISGVHLDAagRPVRYKVENSWGDAVGDKGYFVMS 458
                   445678899888887766654555689***************997 PP

>> Phage_portal_2  Phage portal protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.7e-06      0.01     134     183 ..     400     447 ..     383     469 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-06
  Phage_portal_2 134 vplqlqllepdrldtdknvleegnrirqGvefdadgrpvaYwiyrehpgd 183
                     +  ++ l  +drl t+++ + ++  +++Gv +da grpv Y + +++ gd
      CDO72541.1 400 FDIKFGLTKADRLRTNES-SMTHAMVISGVHLDAAGRPVRYKVENSW-GD 447
                     778888999****88555.5667*******************98875.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3423.25
//
Query:       CDO72542.1  [L=310]
Description: hypothetical protein BN946_scf184983.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00042   19.9   0.0    0.00085   18.9   0.0    1.4  1  DUF4218        Domain of unknown function (DUF4218)
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.038   13.9   0.0    1.3  1  NiFe-hyd_HybE  [NiFe]-hydrogenase assembly, chaperone, HybE


Domain annotation for each model (and alignments):
>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   9.4e-08   0.00085      25      72 ..       8      55 ..       2      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.4e-08
     DUF4218 25 lEkiFppaffdvmvHLivHlvdeaklaGPvhyrnmypveRkllvlkky 72
                l ++F   +     H+ +Hl +   l GPvh+ + yp+eR+   l++ 
  CDO72542.1  8 LQQLFEWHHLVPNNHISLHLRECLELFGPVHAWWAYPFERFNGLLQGL 55
                66777777777889**************************98877765 PP

>> NiFe-hyd_HybE  [NiFe]-hydrogenase assembly, chaperone, HybE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.3e-06     0.038      61     106 ..     121     166 ..     116     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-06
  NiFe-hyd_HybE  61 eedwsalpagekeelelPsgdfeflvaeeeglgrylacSLfspmee 106
                     e++++ + + k++ +lP+  +++lv++ ++++r+ + SLf+pm +
     CDO72542.1 121 SENANTFEYNVKKSATLPRALYDLLVDRVQRISRLPFTSLFAPMAD 166
                    56677778888999******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2196.69
//
Query:       CDO72543.1  [L=1008]
Description: hypothetical protein BN946_scf184983.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-11   42.5   0.0    3.3e-10   39.6   0.0    2.0  2  Transposase_21  Transposase family tnp2
  ------ inclusion threshold ------
      0.017   14.6   0.0       0.03   13.8   0.0    1.3  1  DUF1258         Protein of unknown function (DUF1258)


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   3.7e-14   3.3e-10      32     149 ..     353     468 ..     345     478 .. 0.87
   2 ?    0.2   0.0     0.042   3.8e+02      40      63 ..     638     661 ..     616     667 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3.7e-14
  Transposase_21  32 lglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlravllw 126
                     l ++ dG   +   s+s  +W ++ + ++lPP    k++++l   +i Gpk+P k++d ++ P +  l  l  eG+  +da +++ f+    ll 
      CDO72543.1 353 LMFSLDGAQLYE--SKSSDCWFLVWVLFDLPPTARYKKRYVLPGAVIGGPKKP-KNVDSFIFPSLYHLAALQCEGLAIWDAAENRLFRSYLFLLL 444
                     566667777776..455679*********************************.79*************************************** PP

  Transposase_21 127 tindfPalstlsGlst.kgklacv 149
                        d Pa+++l Gl+  +g ++c 
      CDO72543.1 445 VTADGPAMAYLNGLVGhQGAHGCR 468
                     *************98615666774 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.042
  Transposase_21  40 nPfgsmsssysvWpvllipynlPP 63 
                     nP  ++ss y  W  ll  y l P
      CDO72543.1 638 NPAEKISSGYKAWEFLLYVYGLLP 661
                     99******************9877 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.4e-06      0.03      98     209 ..     351     471 ..     343     476 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-06
     DUF1258  98 lslllsidGvsikGnkk.klWPvslilvdlPvaemqkstnillegivecsenPsta...lWnallPlilsdleskt..Gkvkkvkfkar..ivtltadq 188
                 + l+ s+dG ++  +k    W + ++l dlP +   k   +l  +++ + ++P  +   ++ +l  l     e       +++  f+    ++ +tad 
  CDO72543.1 351 MVLMFSLDGAQLYESKSsDCWFLVWVLFDLPPTARYKKRYVLPGAVIGGPKKPKNVdsfIFPSLYHLAALQCEGLAiwDAAENRLFRSYlfLLLVTADG 449
                 56789******98877669*******************************999764333677777777777776432256677778765115789**** PP

     DUF1258 189 PakrslfGlrahqseksc.ffc 209
                 Pa   l Gl  hq ++ c ++c
  CDO72543.1 450 PAMAYLNGLVGHQGAHGCrLYC 471
                 ****************996677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 6948.11
//
Query:       CDO72544.1  [L=289]
Description: hypothetical protein BN946_scf184983.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2032.37
//
Query:       CDO72545.1  [L=229]
Description: hypothetical protein BN946_scf184983.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0058   17.6   2.5       0.22   12.6   0.1    2.5  2  AvrLm4-7  Avirulence Effector AvrLm4-7


Domain annotation for each model (and alignments):
>> AvrLm4-7  Avirulence Effector AvrLm4-7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.2e-05      0.22      65      84 ..      53      72 ..      39      74 .. 0.85
   2 !    4.4   0.4    0.0042        76      11      53 ..     154     198 ..     144     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
    AvrLm4-7 65 iCtvtawRfrEWmseleeks 84
                 C+v++w  rEW++  ++++
  CDO72545.1 53 LCQVSFWHKREWQEAEKTSK 72
                5************9877665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0042
    AvrLm4-7  11 eaeaCeeda...eklekeCaelaqkykdyseqnekrlGrditaela 53 
                 +++ C e +   ++++++  ++ ++y+++ +++e+++ rd  ++ +
  CDO72545.1 154 RTQ-CYELQlceDNWKADKVAVISNYTQWKKKHEEQVARDTAKTRN 198
                 444.76666677889999999999************9999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1571.83
//
Query:       CDO72546.1  [L=402]
Description: hypothetical protein BN946_scf184983.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-07   29.1   0.0    3.7e-06   27.1   0.0    2.0  2  rve             Integrase core domain
  ------ inclusion threshold ------
      0.061   13.6   0.1       0.15   12.2   0.0    1.6  2  DDE_Tnp_IS240   DDE domain
        0.1   12.7   0.1       0.24   11.6   0.1    1.6  1  Integrase_H2C2  Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.2e-10   3.7e-06      69     112 ..     116     158 ..      94     164 .. 0.92
   2 ?   -1.7   0.0      0.54   3.2e+03      87     106 ..     287     306 ..     284     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.2e-10
         rve  69 rvlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfh 112
                 ++++Dngs++  +a+r++ ++++ ++    p++++ nG+vEr h
  CDO72546.1 116 ELVTDNGSAFL-SAVRDLEKRFNLHHIKISPYNSKANGIVERSH 158
                 789********.7*****************************99 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.54
         rve  87 ladlgirvsftrpgrpqdnG 106
                  ++++i+ s++r+ rp++ G
  CDO72546.1 287 MRHMQIEKSLNRKMRPRYTG 306
                 6899************9876 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.6e-05      0.15      60     111 ..     115     166 ..     109     186 .. 0.86
   2 ?   -3.2   0.0       1.5   8.8e+03      84     104 ..     245     265 ..     232     278 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
  DDE_Tnp_IS240  60 eeivtDkasayasalkelkreg.elfdevshvqvkylnnriEsdhrtlKkrlr 111
                    +e+vtD  sa++sa++ l + +   + ++s +++k  n ++E++h   ++ l+
     CDO72546.1 115 VELVTDNGSAFLSAVRDLEKRFnLHHIKISPYNSKA-NGIVERSHFDTRQVLF 166
                    589*******************55567999999999.99******99988775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.5
  DDE_Tnp_IS240  84 fdevshvqvkylnnriEsdhr 104
                    +d+ s +++++ + riE+  +
     CDO72546.1 245 HDQLSLLKSRVYRARIEAAKK 265
                    455555666655666665544 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     4e-05      0.24       3      22 ..      67      86 ..      65      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
  Integrase_H2C2  3 kslrkeilkeaHdsagHlGi 22
                    ++ r +il++aHd++gH G 
      CDO72546.1 67 PEKRLDILRAAHDHLGHRGQ 86
                    57899************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2763.59
//
Query:       CDO72547.1  [L=193]
Description: hypothetical protein BN946_scf184983.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   25.0   2.1    2.5e-05   24.2   2.1    1.4  1  zf-CCHC     Zinc knuckle
     0.0018   18.0   2.2     0.0033   17.1   2.2    1.4  1  zf-C2H2_10  C2H2 zinc-finger
  ------ inclusion threshold ------
       0.02   14.7   0.3      0.041   13.7   0.3    1.5  1  zf-CCHC_6   Zinc knuckle
      0.037   13.7   0.5      0.065   13.0   0.5    1.3  1  zf-CCHC_4   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   2.1   5.5e-09   2.5e-05       1      17 [.     136     152 ..     136     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.5e-09
                 SCTSSSSSSSSTTTTST CS
     zf-CCHC   1 rkCynCGepGHiardCp 17 
                 +kC++C e+GH+a +Cp
  CDO72547.1 136 NKCFYCREVGHRAANCP 152
                 69**************9 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.2   7.4e-07    0.0033       5      22 ..     137     154 ..     135     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.4e-07
  zf-C2H2_10   5 tCSYChetGHtRAkCekR 22 
                 +C YC+e+GH  A+C ++
  CDO72547.1 137 KCFYCREVGHRAANCPAK 154
                 799************876 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   9.1e-06     0.041       3      28 ..     137     160 ..     135     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.1e-06
   zf-CCHC_6   3 KCknCGAFGHtarSkrCPmkcwngal 28 
                 KC  C+  GH+a    CP k+ n++ 
  CDO72547.1 137 KCFYCREVGHRA--ANCPAKRNNNPK 160
                 9***********..78*****98865 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   1.4e-05     0.065      32      48 ..     136     152 ..     133     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 ++C+ C+ +GH +++C+
  CDO72547.1 136 NKCFYCREVGHRAANCP 152
                 78**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1357.51
//
Query:       CDO72548.1  [L=799]
Description: hypothetical protein BN946_scf184983.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-55  187.0   0.0    8.2e-31  107.2   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.035   14.0   0.0    1.6  2  APH             Phosphotransferase enzyme family
      0.019   14.3   0.0      0.033   13.5   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   9.2e-26   5.5e-22      18     213 ..     282     500 ..     268     514 .. 0.83
   2 !  107.2   0.0   1.4e-34   8.2e-31     279     407 ..     517     656 ..     498     657 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 9.2e-26
  Pkinase_fungal  18 kdwedvlvvgelkkksee........eklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlgl 104
                     k w+d +  +e+k +s++         ++++ l q+a+ya   ++a p   F + ++++g+++ + +fDR G+ +s   ++ +++++firv+ ++
      CDO72548.1 282 KFWSDRAGFIEVKASSQQrpevdvkkREVSQILAQVANYASVHLSARPFSVFSVSIMIFGCDFCIAIFDRGGAQVSPIYNMFNNSDTFIRVIRSV 376
                     5566655566665555431111111135678889999*******************************************************998 PP

  Pkinase_fungal 105 l.lmdddeLGlDptiv......tesdgrrsyeikaeeeketekleleeplarqraivgRgTtcwrarkeger....gkeyvvKdsWrdaerksEa 188
                     + +++d+eLGlDp+++       +s g++  +++a ++++ +  ++   + ++ ++ gR+T++w +r+ +++    g ++++K +Wr+++r+sE 
      CDO72548.1 377 TrILSDAELGLDPSVSlappplSSSSGGPAWIVGAVGSDKRRWCTIGPAIWSSFCLFGRATAVWPVREINKHdelvGDDMILKSTWRSSDRNSES 471
                     73689****************5449999*****99999999999999*********************9998999*99***************** PP

  Pkinase_fungal 189 elLkkaeergvegvarlvahedve.....e 213
                      + +++ + +  g+a+++a  dv      +
      CDO72548.1 472 FIYQNI-QGSHPGLAKFIAGGDVVfpfhnD 500
                     ******.8899********99998775432 PP

  == domain 2  score: 107.2 bits;  conditional E-value: 1.4e-34
  Pkinase_fungal 279 rsrlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga.. 371
                     r + +++v++rl+i++vGkp++++++ +elle+l+ a+k+hr L  +++iLHrD+S++N+l+  + ++++  g+L DL++a   + +++++++  
      CDO72548.1 517 RGE-RTKVLHRLLIESVGKPVWEYQTDRELLEGLIGALKAHRFLS-EQNILHRDVSAGNVLLALDPEKQGTAGFLTDLEYAHMGAVVTRTRQEtv 609
                     333.59***************************************.*****************888889************98887777775556 PP

  Pkinase_fungal 372 ....rertGTleFmaievlkg...eeHsyr....hDLESffyvllwi 407
                          +  GTl+Fm+ ++l +   ++Hs+     +D+ESf++vll+ 
      CDO72548.1 610 eaptAYGPGTLQFMSRRLLAAlisGQHSVTttihDDVESFLWVLLYA 656
                     67778899***********9654355766544449**********96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   7.3e+03      92     124 ..     152     181 ..     137     212 .. 0.55
   2 ?   14.0   0.0   5.9e-06     0.035     137     200 ..     535     599 ..     505     618 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCC CS
         APH  92 pellealgeflaalhqvdpaalpladflaqdle 124
                  e ++a+ +  +al+++   a++ ++++  +le
  CDO72548.1 152 LEEGGAVYRQVKALQNM---ARRADRMTVAQLE 181
                 55555555555555555...2222222222222 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.9e-06
                 CGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE-.--TT-EEEE CS
         APH 137 laselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGvi.Dfedaglgp 200
                 +  e++ ++e le  ++ al+a++   +++ +lH+D + gN+l+   p+++   G++ D+e+a++g 
  CDO72548.1 535 PVWEYQTDRELLEG-LIGALKAHRF-LSEQNILHRDVSAGNVLLAldPEKQGTAGFLtDLEYAHMGA 599
                 55555665555555.999******9.599****************9977777778877999999994 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.5e-06     0.033     109     137 ..     549     577 ..     531     586 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-06
                  HHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr 109 alqvAkGmeyLeskklvHrdlaarNvLls 137
                   +   k+ ++L++++++Hrd++a NvLl+
   CDO72548.1 549 LIGALKAHRFLSEQNILHRDVSAGNVLLA 577
                  555667889******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5361.95
//
Query:       CDO72549.1  [L=294]
Description: hypothetical protein BN946_scf184983.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-38  131.9   0.0    3.2e-38  131.4   0.0    1.1  1  ARD           ARD/ARD' family
    2.7e-10   39.8   0.1    5.1e-10   38.9   0.1    1.4  1  Cupin_2       Cupin domain
    1.1e-06   28.6   0.3    1.7e-06   28.0   0.3    1.3  1  AraC_binding  AraC-like ligand binding domain
    4.3e-05   22.6   0.1    5.6e-05   22.2   0.1    1.1  1  Sugar_tr      Sugar (and other) transporter
  ------ inclusion threshold ------
      0.024   13.9   0.1        1.3    8.2   0.0    2.1  2  Lyx_isomer    D-lyxose isomerase
       0.03   14.0   0.1      0.055   13.2   0.0    1.4  1  Cupin_8       Cupin-like domain
      0.058   13.0   0.0      0.092   12.3   0.0    1.2  1  Cupin_1       Cupin
       0.12   12.1   0.1       0.19   11.4   0.1    1.2  1  3-HAO         3-hydroxyanthranilic acid dioxygenase
       0.15   12.1   0.0       0.25   11.3   0.0    1.4  1  Pirin         Pirin


Domain annotation for each model (and alignments):
>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   1.6e-41   3.2e-38       1     150 [.       2     150 ..       2     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 1.6e-41
         ARD   1 riyimddseegderlphhtspkekaeelelaklgvlrwkldaddeee.aeeeekilktkeeekkdidvevlkestpnfdeklekFfeEhlhedeeirli 98 
                 r+y++d+++ gd+rlph++     +  + la lgvl+w+++ d  e  + + + i + ++++ +d+      +  + f+ek++ Ff+Eh hedeeir++
  CDO72549.1   2 RAYYYDNAP-GDQRLPHDSG--RDVPLETLAALGVLYWRIPVDAPEGwERKIDAIAEERKYSSRDVVTANKDALGAAFEEKMAMFFKEHIHEDEEIRYL 97 
                 578999998.7********9..66666778889999*****99876515677888999999999995555566789*********************** PP

         ARD  99 veGtgyFdvr.skdeawirvlvekGDLivlPagiyhrFtltednkvkalRlFv 150
                 +eG+++Fdvr ++ ++w+r+++e+GD+i+lPagiyhrF l+e+++ + lRlF+
  CDO72549.1  98 LEGSAFFDVReHTTDSWVRCHLEAGDMIILPAGIYHRFSLDEQEHARTLRLFK 150
                 **********77899*************************************6 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   2.6e-13   5.1e-10      12      68 ..      85     146 ..      79     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 2.6e-13
                 EEECSSSEEEEEEEEESEEEEEECTE......EEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2  12 pshrHpgedeffyVleGegeltvdge......eveleaGdsvyfpagtpHrfrNtgdeparll 68 
                 ++h+H++e e++y leG + + v ++      +++leaGd+++ pag  Hrf  +++e ar l
  CDO72549.1  85 KEHIHEDE-EIRYLLEGSAFFDVREHttdswvRCHLEAGDMIILPAGIYHRFSLDEQEHARTL 146
                 79******.*************9988899999************************9999976 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3   8.5e-10   1.7e-06      15      69 ..      83     144 ..      74     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.5e-10
                   SEEEETT-SEEEEEEEEE-EEEEETTEE......EEE-TT-EEEE-TTS-EEEEE-TTS.EE CS
  AraC_binding  15 sfpphvhdeyvihyvteGtgrlrlngrt......ydlgpGdlfLlppgepHdyesdsed.gw 69 
                    f++h h+  +i y +eG++ + ++++t      ++l++Gd+++lp g  H++  d+++   
    CDO72549.1  83 FFKEHIHEDEEIRYLLEGSAFFDVREHTtdswvrCHLEAGDMIILPAGIYHRFSLDEQEhAR 144
                   79*****************************************************9966433 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.8e-08   5.6e-05     392     451 ..     218     274 ..     211     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.8e-08
                 HHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 392 vavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                  ++nw + ++i+ ++  ++++i+ ++ f ++ gl+++f+   + ++pet+g+ lee++  
  CDO72549.1 218 GMTNWGCDLVIGATYLSFMDRITPAGAFGFYEGLCYAFV---LCCFPETAGLRLEEVQLN 274
                 79********************************98865...5667**********9865 PP

>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.017        34     185     218 ..      63      98 ..      53     103 .. 0.88
   2 ?    8.2   0.0   0.00067       1.3     142     176 ..     105     139 ..     101     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
  Lyx_isomer 185 evstvndDetDnrFleplgRf..seieedeeplhll 218
                 +v t n D+    F+e+++ f  ++i+edee  +ll
  CDO72549.1  63 DVVTANKDALGAAFEEKMAMFfkEHIHEDEEIRYLL 98 
                 68999*************9995557******99998 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00067
  Lyx_isomer 142 DGvkktvaageklrlkpGesitlepglyHkfwaek 176
                 D +++t++++ + +l+ G+ i+l  g+yH+f  ++
  CDO72549.1 105 DVREHTTDSWVRCHLEAGDMIILPAGIYHRFSLDE 139
                 6678889999999******************9775 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.8e-05     0.055     209     233 ..     112     136 ..      98     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
     Cupin_8 209 kkalevtlnaGevLylPalWfHeVk 233
                  + ++++l+aG+++ lPa+ +H+ +
  CDO72549.1 112 DSWVRCHLEAGDMIILPAGIYHRFS 136
                 46889*****************976 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.6e-05     0.092      49     100 ..      87     136 ..      74     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.6e-05
                 EEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEE CS
     Cupin_1  49 hyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqy 100
                 h+h   +ei y l+G+++   v ++   +  +  l++Gd++++Pag+ h + 
  CDO72549.1  87 HIH-EDEEIRYLLEGSAF-FDVREHTTDSWVRCHLEAGDMIILPAGIYHRFS 136
                 889.999***********.677777644455555*************99765 PP

>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.3e-05      0.19      49      93 ..      87     133 ..      82     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.3e-05
                 EE-SS-EEEEEEES-EEEEEEETTCCC..EEEE-TTEEEEE-TT--E CS
       3-HAO  49 hleegeeffyqkkGdmvlkvldegkar..divireGeifllParvph 93 
                 h++e ee+ y ++G+  + v ++++       +++G++ +lPa + h
  CDO72549.1  87 HIHEDEEIRYLLEGSAFFDVREHTTDSwvRCHLEAGDMIILPAGIYH 133
                 9***********************9984556789*********9988 PP

>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.25      24     108 .]      63     153 ..      46     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                 CEEESS.S.ETT..EEEET-EEEEEEEBSEEEEEEEECSEE.....EEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS..SS-EEEEEEEE CS
       Pirin  24 defdpaelevge..edvigagfpphphrgletvtylleGev.....ehrDslGnkgvirpGdvqwmtAgsGivhsEmneee..eesleglqlWv 108
                 d +++++ + g+  e+++++ f++h h++ e + ylleG+      eh      +  +++Gd+ ++ Ag  i h    +e+   ++l+++++W+
  CDO72549.1  63 DVVTANKDALGAafEEKMAMFFKEHIHEDEE-IRYLLEGSAffdvrEHTTDSWVRCHLEAGDMIILPAG--IYHRFSLDEQehARTLRLFKIWL 153
                 4455555455556689999**********66.69*****8634334566566667889********995..666544444433889999***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2139.47
//
Query:       CDO72550.1  [L=273]
Description: hypothetical protein BN946_scf184983.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1854.51
//
Query:       CDO72551.1  [L=1528]
Description: hypothetical protein BN946_scf184983.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-33  114.6  26.6    4.1e-07   30.6   0.0   10.9 11  WD40          WD domain, G-beta repeat
    7.6e-14   51.8   0.2      0.033   14.5   0.0    7.2  7  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.6e-11   44.4   0.0    7.7e-11   42.2   0.0    2.2  2  NACHT         NACHT domain
    4.5e-05   23.9   0.1    0.00019   21.9   0.0    2.1  2  AAA_16        AAA ATPase domain
     0.0002   20.8   0.0        2.1    7.6   0.0    3.9  4  WD40_like     WD40-like domain
     0.0005   19.1   0.1        5.7    5.8   0.0    3.8  3  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    0.00075   19.8   0.0     0.0018   18.5   0.0    1.6  1  AAA_22        AAA domain
     0.0016   18.3   2.4        4.2    7.4   0.0    4.8  5  PD40          WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.021   15.2   0.0       0.19   12.1   0.0    2.3  2  DUF296        Plants and Prokaryotes Conserved (PCC) domain
      0.031   13.5   0.0      0.057   12.6   0.0    1.3  1  NB-ARC        NB-ARC domain
       0.14   10.7   0.1        1.8    7.0   0.0    2.4  2  Cytochrom_D1  Cytochrome D1 heme domain
        0.2   10.8   0.1       0.38   10.0   0.1    1.4  1  KAP_NTPase    KAP family P-loop domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   6.8e-05       0.1       9      38 .]     840     867 ..     828     867 .. 0.82
   2 !   22.2   0.1   1.2e-07   0.00018       4      38 .]     874     909 ..     871     909 .. 0.89
   3 !   30.6   0.0   2.7e-10   4.1e-07       2      37 ..     914     950 ..     913     951 .. 0.93
   4 !   20.8   0.0   3.4e-07   0.00051       6      38 .]     960     992 ..     956     992 .. 0.90
   5 !   10.4   0.1   0.00064      0.96       4      38 .]     999    1033 ..     996    1033 .. 0.89
   6 ?   -2.5   0.0       7.9   1.2e+04      12      38 .]    1051    1076 ..    1040    1076 .. 0.69
   7 ?    5.7   0.1      0.02        30       3      37 ..    1199    1235 ..    1197    1236 .. 0.64
   8 !   12.3   0.3   0.00016      0.24       2      37 ..    1241    1278 ..    1240    1279 .. 0.79
   9 !    6.7   0.0    0.0099        15      12      29 ..    1300    1317 ..    1291    1325 .. 0.85
  10 ?   -1.7   0.1       4.3   6.4e+03      10      29 ..    1364    1384 ..    1355    1393 .. 0.70
  11 ?    2.0   0.0       0.3   4.5e+02       8      23 ..    1422    1438 ..    1416    1442 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.8e-05
                 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvriWd 38 
                 G   + +++ spdg++++sG++ g + +W+
  CDO72551.1 840 GN--IEAVDLSPDGRYIVSGHETGAIWLWN 867
                 33..99***********************8 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.2e-07
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +  + GH+  v+s++fsp g+ ++sGsdD tv++Wd
  CDO72551.1 874 IVAFQGHTRiVRSVSFSPTGKEVLSGSDDVTVKLWD 909
                 55699**6657************************9 PP

  == domain 3  score: 30.6 bits;  conditional E-value: 2.7e-10
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 +cl tl  Hs  ++s+a+spdga+ asGs D+tv +W
  CDO72551.1 914 TCLATLQKHSQlIRSVAWSPDGALAASGSFDKTVVLW 950
                 79*******6679************************ PP

  == domain 4  score: 20.8 bits;  conditional E-value: 3.4e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l GH ++v+++ f  dg +l s+s+D+t riWd
  CDO72551.1 960 VLLGHeDHVNHVVFAADGILL-SASEDKTSRIWD 992
                 5679*888************9.6899*******9 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00064
                  EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  +r+l+ H ssv + a s+dg+ +a+G d g v iW+
  CDO72551.1  999 IRVLR-HsSSVQCAAASSDGRSVACGLDTGEVVIWN 1033
                  56776.8788**************9988*******8 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 7.9
                  SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   12 svtslafspdgawlasGsdDgtvriWd 38  
                  +v sl f  ++++ a++ +  ++ +W+
  CDO72551.1 1051 PVVSLTFYLNHQL-AAAYEYSSCTLWN 1076
                  4667755555555.7789999999997 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.02
                  EEEEEE..SSSSEEEEEEETTSSE..EEEEETTSEEEEE CS
        WD40    3 clrtlt..GHssvtslafspdgaw..lasGsdDgtvriW 37  
                  c+rt++  G  +    a+ p g++  +a+ ++D +v++W
  CDO72551.1 1199 CVRTFErsGA-GC-RTAWTPAGDLrvIACTGKDYKVHVW 1235
                  5555542222.33.345889999985565599******* PP

  == domain 8  score: 12.3 bits;  conditional E-value: 0.00016
                  EEEEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40    2 qclrtltGHss.vtslafspdgaw.lasGsdDgtvriW 37  
                  + + tl GHs+ +++l+f  dg   ++s+s+Dgt+  W
  CDO72551.1 1241 RSIATLAGHSDyISALCFVGDGGKqIVSASYDGTICRW 1278
                  5678999**556*****66666666899999****877 PP

  == domain 9  score: 6.7 bits;  conditional E-value: 0.0099
                  SEEEEEEETTSSEEEEEE CS
        WD40   12 svtslafspdgawlasGs 29  
                  s+ +la+s+dg+w++s+s
  CDO72551.1 1300 SIEALAVSSDGQWILSAS 1317
                  5999**********9987 PP

  == domain 10  score: -1.7 bits;  conditional E-value: 4.3
                  SSS..EEEEEEETTSSEEEEEE CS
        WD40   10 Hss..vtslafspdgawlasGs 29  
                  H +  + s+afs d +  ++G 
  CDO72551.1 1364 H-HllIFSVAFSEDCSRALAGN 1384
                  3.477999*9*99988877775 PP

  == domain 11  score: 2.0 bits;  conditional E-value: 0.3
                  ESS.SSEEEEEEETTSS CS
        WD40    8 tGH.ssvtslafspdga 23  
                  tG  +sv++++fspd++
  CDO72551.1 1422 TGArDSVCHISFSPDSR 1438
                  577778*********97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0038       5.6      37      78 ..     838     879 ..     820     883 .. 0.87
   2 !   14.5   0.0   2.2e-05     0.033      37      90 ..     880     932 ..     876     934 .. 0.93
   3 !    9.6   0.0   0.00076       1.1      35      71 ..     920     956 ..     916     976 .. 0.85
   4 ?    5.9   0.1      0.01        15       2      85 ..     930    1009 ..     929    1022 .. 0.79
   5 !    9.1   0.0    0.0011       1.6      11      76 ..    1021    1086 ..    1015    1100 .. 0.86
   6 ?    5.4   0.0     0.015        23      19      77 ..    1135    1204 ..    1127    1212 .. 0.80
   7 ?    2.6   0.0      0.11   1.7e+02      45      87 ..    1213    1256 ..    1207    1261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0038
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  + ++++++  +pdg+ ++ +++ g++ l + ++g  + +++ 
   CDO72551.1 838 PAGNIEAVDLSPDGRYIVSGHETGAIWLWNTQTGAPIVAFQG 879
                  567899999*************************99988875 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.2e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + + vrs++++p gk    + +d +v+l d+ +++++ +l+ +s+  + ++ W+
   CDO72551.1 880 HTRIVRSVSFSPTGKEVLSGSDDVTVKLWDVMTETCLATLQKHSQL-IRSVAWS 932
                  56779**************************************996.******7 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00076
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +k+++ +rs+aW+pdg l a +  d +v l  + s +
   CDO72551.1 920 QKHSQLIRSVAWSPDGALAASGSFDKTVVLWRVTSDE 956
                  578899***********************99998876 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.01
  ANAPC4_WD40    2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85  
                   +w+p   L A ++ d+ +++ R+   +   +   +++ +v+++ +  dg l   a +d + r+ d++ ++ ++ l+ +s+  v+
   CDO72551.1  930 AWSPDGALAASGSFDKTVVLWRVTSDEEPAV-LLGHEDHVNHVVFAADGIL-LSASEDKTSRIWDIHGKTAIRVLRHSSS--VQ 1009
                   7999999999999999999999977554444.3468889999999999955.5678999999999998888877766655..55 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0011
  ANAPC4_WD40   11 Alatedgellv.fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76  
                   A + ++ge+++ +R +g+r+ +l+++++ s v sL +  + + La ay+ +++ l ++ sg++++s 
   CDO72551.1 1021 ACGLDTGEVVIwNRGDGHRLRSLANPTSTSPVVSLTFYLN-HQLAAAYEYSSCTLWNVFSGELLKSE 1086
                   556666776553899**********************987.669******************99875 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.015
  ANAPC4_WD40   19 llvfRlngqrvwtl............eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77  
                   + + R   +rv ++              d++d ev +L+ +pd +l  vay   ++ ll+a++g++v++++
   CDO72551.1 1135 VGIVRRYRKRVLGFilgkeegvsaeeYLDDSDVEVADLSLSPDRRLVLVAYPR-RLLLLNASTGECVRTFE 1204
                   666677777777777777777776655578999**************999975.7899*********9987 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.11
  ANAPC4_WD40   45 aWkpdg..klLavaysdgevrlldaesgkvvhslsvksekavtcl 87  
                   aW p g  +++a   +d +v++ + e+g+ + +l  +s+  ++ l
   CDO72551.1 1213 AWTPAGdlRVIACTGKDYKVHVWETETGRSIATLAGHSD-YISAL 1256
                   698888224566666899*************99988887.47766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   5.1e-14   7.7e-11       2     142 ..     271     428 ..     270     458 .. 0.78
   2 ?   -3.0   0.0       4.1   6.1e+03      41      77 ..    1315    1351 ..    1312    1368 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 5.1e-14
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.......-HCHHHCCCCTS--SSS-C......................... CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna....rsladllfsqlpepaapvse......................... 71 
                 +++++G aG GK+tL+q +a+ w e+k  +        ++++++ +++n+    r++a++l+ ++p   ++                            
  CDO72551.1 271 ILWIHGLAGFGKSTLAQTVATWWDEDKILGAS------FFCARDGDRSNVmcifRTIAYQLACHFPGFHDALLDvlkadpdvsasfptqqlkklivepl 363
                 68*************************88853......45555555556658998888888888888888888889999999999************** PP

                 .CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHH.HCTTTTT--EEEEEEECCCHHHHCTTSSCE CS
       NACHT  72 .vwavllelperlLlilDglDelvtdlgqkekqpvrtlLsel.irkkllpeasllltvrpralrdleeqleea 142
                  v++ +   p+r+++++D+lDe+ +d          t L++l +  + l   ++++t+rp+    + +++ e 
  CDO72551.1 364 kVVKARGDFPDRVVIVIDALDECTDDGAV------STILTSLsLHVSELAPLKFVITSRPEEN--ITRGFMEL 428
                 ***********************985444......55555443555559999999****9987..55554443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.1
                  ETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHC CS
       NACHT   41 slrelsrsgnarsladllfsqlpepaapvsevwavll 77  
                  s +++++s + +s adll+++  +p++++ +++a++l
  CDO72551.1 1315 SASTRNDSPPDTSSADLLAKPSRPPSDQPGRYRALRL 1351
                  56667777666999******99999999988777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.3e-07   0.00019      23     150 ..     268     389 ..     252     412 .. 0.73
   2 ?   -3.2   0.0       6.2   9.3e+03     106     132 ..     755     802 ..     703     806 .. 0.49

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.3e-07
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd...g.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea. 116
                 +++++ ++G +G GKs+l++++++ + +d   g  +f + + d++         + +++r ++  ql+ +     ++ ++++l+++l+a p+++++ + 
  CDO72551.1 268 DSSILWIHGLAGFGKSTLAQTVATWWDEDkilGaSFFCARDGDRS--------NVMCIFR-TIAYQLACH-----FPGFHDALLDVLKADPDVSASFPt 352
                 4489********************999996664233333333333........4777845.888888877.....8999999******88888888778 PP

      AAA_16 117 srllellkrllallsrder.p..lvlvlDdlqwadea 150
                 ++l  l+ + l+  + +++ p  +v+v+D l+   ++
  CDO72551.1 353 QQLKKLIVEPLKVVKARGDfPdrVVIVIDALDECTDD 389
                 88888888888444444444456*********87773 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.2
      AAA_16 106 a.....................avpelagaeasrllellkrllallsr 132
                                       +v++  +a++ +++++ k++++++++
  CDO72551.1 755 LnmlslplpgmdapdllhdcerIVRAFYPAISASFFQVYKAAVVFSPT 802
                 234444443343344444444466666666667777777777777666 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   2.5e+02       3      42 ..     842     881 ..     840     919 .. 0.82
   2 !    7.6   0.0    0.0014       2.1       4     108 ..     927    1033 ..     924    1038 .. 0.87
   3 ?   -0.1   0.0       0.3   4.5e+02      23      48 ..    1071    1096 ..    1061    1098 .. 0.92
   4 !    6.1   0.0    0.0041       6.1      14      73 ..    1222    1283 ..    1218    1294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfe 42 
                 i ++d+s++g +i+ G +   + + +++++  +  +++ +
  CDO72551.1 842 IEAVDLSPDGRYIVSGHETGAIWLWNTQTGAPIVAFQGHT 881
                 5689999999999999999999999999999988877655 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0014
   WD40_like    4 YsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevenekieedistvkv..iddklliG 98  
                   s+  s++g l + G+ d+++ +  + s+e+  ++ + ed v +v +  d  +l ++ D t    +++ +  ++  +    + ++    ++  ++ G
  CDO72551.1  927 RSVAWSPDGALAASGSFDKTVVLWRVTSDEEPAVLLGHEDHVNHVVFAADGILLSASEDKTSRIWDIHGKTAIRVLRHSSSVQCAAAssDGRSVACG 1023
                  588999*****************************************************99999999999988888877777776551155689999 PP

   WD40_like   99 tnkGsiyvfs 108 
                   ++G++ +++
  CDO72551.1 1024 LDTGEVVIWN 1033
                  9999998887 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.3
   WD40_like   23 kctvlkleslesvsivesfedSvifv 48  
                   ct+ ++ s+e+  +++sf+ Sv f+
  CDO72551.1 1071 SCTLWNVFSGELLKSEDSFSSSVAFS 1096
                  7***********************97 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0041
   WD40_like   14 lilyGgkddkctvlkleslesvsivesfedSvifvkllddd..lilvvtlDGtillsllene 73  
                  +i+  gkd k+ v ++e++ s+  +++ +d +    ++ d   +i+ ++ DGti   +l  +
  CDO72551.1 1222 VIACTGKDYKVHVWETETGRSIATLAGHSDYISALCFVGDGgkQIVSASYDGTICRWTLDVG 1283
                  68999****************************99999886668999*******88777665 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011        16     175     218 ..     868     912 ..     850     917 .. 0.73
   2 !    4.8   0.0    0.0077        11     181     220 ..     916     956 ..     911     970 .. 0.83
   3 !    5.8   0.0    0.0038       5.7     179     246 ..     996    1060 ..     954    1076 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.011
    Ge1_WD40 175 eeieegllkieehs.liveaafspdGtalatasedGevkffqvyl 218
                  ++   ++ ++ h+  + + +fsp G  +   s d +vk++ v  
  CDO72551.1 868 TQTGAPIVAFQGHTrIVRSVSFSPTGKEVLSGSDDVTVKLWDVMT 912
                 344445789999993455679********************9975 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0077
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffqvyled 220
                 l  +++hs li + a+spdG+  a  s d +v +++v   +
  CDO72551.1 916 LATLQKHSqLIRSVAWSPDGALAASGSFDKTVVLWRVTSDE 956
                 56788998678889*********************997655 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0038
    Ge1_WD40  179 egllkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldn 246 
                  ++ +++ +hs  + +aa s+dG ++a     Gev  +     d ++ r L    P    ++ sl f  n
  CDO72551.1  996 KTAIRVLRHSsSVQCAAASSDGRSVACGLDTGEVVIWN--RGDGHRLRSLA--NPTSTSPVVSLTFYLN 1060
                  466777777559*********************98774..23334444443..4555566666555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06    0.0018       6     127 ..     270     411 ..     267     420 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..........erpevvfvtlpsstsskdllrellralglelka.....................erl 73 
                 +il ++G +G GK+tl+++++ + de++                            +   ++r ++ +l   ++                      +++
  CDO72551.1 270 SILWIHGLAGFGKSTLAQTVATWWDEDKILGAsffcardgdrS-------------NVMCIFRTIAYQLA--CHFpgfhdalldvlkadpdvsasfPTQ 353
                 7899*******************98654443344554444321.............33333333333333..444455555555555555667778999 PP

      AAA_22  74 sseellealeqalrarav...ielliiDEaqhlrs....eealeeLrsllnlsrkgvqliL 127
                 +++ l+    + ++ar++   +++++iD  +  +      ++l+ L sl+   + + +l +
  CDO72551.1 354 QLKKLIVEPLKVVKARGDfpdRVVIVIDALDECTDdgavSTILTSL-SLHV--SELAPLKF 411
                 999999999999999999**********999974322334444444.3333..34444444 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.033        49       9      24 ..     840     855 ..     835     855 .. 0.83
   2 ?    2.4   0.0      0.11   1.6e+02      12      20 ..     927     935 ..     921     939 .. 0.79
   3 ?   -3.3   0.0       6.6   9.9e+03      15      23 ..    1012    1020 ..    1010    1021 .. 0.77
   4 !    7.4   0.0    0.0028       4.2       4      30 ..    1294    1320 ..    1291    1327 .. 0.84
   5 ?   -2.3   0.2       3.2   4.8e+03      14      20 ..    1431    1437 ..    1431    1438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.033
                 S.EEEEEE-TTSSEEE CS
        PD40   9 gnegaPsfSPDGkrla 24 
                 gn++a  +SPDG++++
  CDO72551.1 840 GNIEAVDLSPDGRYIV 855
                 57788889******96 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                 EEEEE-TTS CS
        PD40  12 gaPsfSPDG 20 
                  + ++SPDG
  CDO72551.1 927 RSVAWSPDG 935
                 5679****9 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.6
                  EE-TTSSEE CS
        PD40   15 sfSPDGkrl 23  
                  + S DG++ 
  CDO72551.1 1012 AASSDGRSV 1020
                  679***986 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0028
                  --SSSS.EEEEEE-TTSSEEEEEEECT CS
        PD40    4 ltntpgnegaPsfSPDGkrlaFsSdRg 30  
                  l+ +++ ++a ++S DG+++  +S+R+
  CDO72551.1 1294 LFRSDESIEALAVSSDGQWILSASTRN 1320
                  56788889999*********9999998 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 3.2
                  EEE-TTS CS
        PD40   14 PsfSPDG 20  
                  +sfSPD 
  CDO72551.1 1431 ISFSPDS 1437
                  59****7 PP

>> DUF296  Plants and Prokaryotes Conserved (PCC) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.19       3      43 ..     701     742 ..     699     775 .. 0.84
   2 ?   -0.3   0.0      0.93   1.4e+03      54      92 ..    1348    1389 ..    1299    1398 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 EEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.E CS
      DUF296   3 hvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.r 43 
                 h+ r e Ged+v+a+e+f++ +  + +  ls +G+v+++  +
  CDO72551.1 701 HLCRAELGEDLVAALEDFCKTHLLHWLEALSLMGCVKDAVdA 742
                 7889999*******************************9942 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.93
                  -EEEEEEEEEEEE.TT...EEEEEEEEETTSEEEEEEEEEE.E CS
      DUF296   54 rfeilslsGtilp.dg...lHlhvslagedgqvvgGhlaegpl 92  
                   + +l +sG +l+ ++   l ++v+++ +  ++++G++  g++
  CDO72551.1 1348 ALRLLDASGHVLWiEHhhlLIFSVAFSEDCSRALAGNVE-GEV 1389
                  56789999999996333455677788886699****998.744 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-05     0.057      18      41 ..     267     290 ..     258     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
                 SCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC  18 lqslvvalvGmgGvGKttlakqil 41 
                 ++s ++ ++G +G GK+tla+ + 
  CDO72551.1 267 PDSSILWIHGLAGFGKSTLAQTVA 290
                 6778*****************986 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0012       1.8      11      96 ..     857     943 ..     847     949 .. 0.90
   2 ?    0.6   0.1       0.1   1.5e+02      30      94 ..     960    1023 ..     944    1043 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0012
                   EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSE.EEEEEE--TTSEEEEEEE CS
  Cytochrom_D1  11 erdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGln.arsvavSqddryvivgnY 96 
                     ++g + l + ++   +  ++++  +  s+ f++ g+ v+  + D +v+l D+++++ +a+++  ++  rsva S d+ +++ g++
    CDO72551.1 857 GHETGAIWLWNTQTGAPIVAFQGHTRIVRSVSFSPTGKEVLSGSDDVTVKLWDVMTETCLATLQKHSQlIRSVAWSPDGALAASGSF 943
                   5678899999999999999********************************************88777369***********99987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
                    EEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEE CS
  Cytochrom_D1   30 vletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivg 94  
                    vl ++ +    +vfa dg  ++ ++ D +  + D++ k+ ++ ++  +  +  a S d+r v+ g
    CDO72551.1  960 VLLGHEDHVNHVVFAADG-ILLSASEDKTSRIWDIHGKTAIRVLRHSSSVQCAAASSDGRSVACG 1023
                    555555544557899977.567899***********************************99987 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00025      0.38     173     194 ..     374     395 ..     335     419 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
  KAP_NTPase 173 krlVvviDdLDrceteevlqll 194
                  r+V+viD+LD c+++ +++++
  CDO72551.1 374 DRVVIVIDALDECTDDGAVSTI 395
                 599************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 9808.02
//
Query:       CDO72552.1  [L=1427]
Description: hypothetical protein BN946_scf184983.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-39  131.0  34.7    8.1e-08   32.8   0.1   11.5 12  WD40           WD domain, G-beta repeat
    1.7e-18   66.7   5.0     0.0013   19.0   0.0    8.1  8  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    5.2e-10   39.5   0.1    1.2e-09   38.3   0.1    1.6  1  NACHT          NACHT domain
    2.8e-06   27.8   1.0    8.4e-05   23.0   0.0    3.2  3  AAA_16         AAA ATPase domain
    4.3e-05   23.8   0.0    0.00013   22.3   0.0    1.8  1  AAA_22         AAA domain
     0.0011   18.1   0.4       0.34    9.8   0.1    3.5  3  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0036   16.0   0.2       0.82    8.2   0.1    3.0  3  Nup160         Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.026   13.9   0.0         10    5.3   0.0    3.6  4  WD40_like      WD40-like domain
      0.038   13.2   0.0      0.082   12.1   0.0    1.4  1  NB-ARC         NB-ARC domain
      0.058   12.4   0.0       0.47    9.4   0.0    2.4  4  Coatomer_WDAD  Coatomer WD associated region
       0.06   13.1   0.0       0.26   11.0   0.0    2.0  2  AAA_30         AAA domain
       0.11   11.7   0.0       0.21   10.8   0.0    1.4  1  KAP_NTPase     KAP family P-loop domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.5e-07    0.0013      11      38 .]     742     770 ..     732     770 .. 0.83
   2 !   32.8   0.1   5.4e-11   8.1e-08       2      38 .]     775     812 ..     774     812 .. 0.92
   3 !   26.9   0.3   4.1e-09   6.2e-06       2      37 ..     817     853 ..     816     854 .. 0.92
   4 !   21.1   0.0   2.8e-07   0.00042       7      38 .]     864     895 ..     858     895 .. 0.87
   5 ?    5.1   0.1     0.032        47       4      38 .]     902     936 ..     899     936 .. 0.79
   6 ?    0.1   0.0       1.2   1.8e+03      15      37 ..     957     977 ..     941     978 .. 0.83
   7 ?   -2.2   0.0       6.4   9.6e+03      14      26 ..     994    1006 ..     990    1008 .. 0.85
   8 ?   -1.2   0.0         3   4.4e+03      12      34 ..    1070    1091 ..    1062    1093 .. 0.74
   9 !    7.9   1.0     0.004       5.9       1      37 [.    1099    1134 ..    1099    1135 .. 0.83
  10 !   24.1   0.1     3e-08   4.5e-05       1      38 []    1139    1178 ..    1139    1178 .. 0.86
  11 !    8.3   0.1     0.003       4.4      11      30 ..    1198    1217 ..    1189    1220 .. 0.81
  12 ?   -1.7   0.2       4.3   6.4e+03      10      38 .]    1262    1291 ..    1251    1291 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.5e-07
                 SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ss.vtslafspdgawlasGsdDgtvriWd 38 
                 s+ +++l fspdg++++sG+++g v +W+
  CDO72552.1 742 SDyIYALEFSPDGRYIVSGHEKGAVWLWN 770
                 3379************************8 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 5.4e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++l  ++GH + v+s++fsp g+ ++sGs D tv+iWd
  CDO72552.1 775 SPLVPFEGHtGAVSSVSFSPTGKEILSGSHDTTVKIWD 812
                 678889***777****************99*******9 PP

  == domain 3  score: 26.9 bits;  conditional E-value: 4.1e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +cl t++ H   v s+ + pdga+ asGsdD+tv +W
  CDO72552.1 817 SCLATWEKHsEAVLSVTWAPDGALAASGSDDRTVVLW 853
                 69999****555************************* PP

  == domain 4  score: 21.1 bits;  conditional E-value: 2.8e-07
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l GH + v+++ f   g +l s+sdD+t+riWd
  CDO72552.1 864 LLGHeDQVNHVGFAAKGILL-SASDDKTCRIWD 895
                 669*777****9******98.6888*******9 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.032
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +r+l+ H ssv +   s+dg ++a+G d g + iW+
  CDO72552.1 902 IRVLR-HsSSVQCATASSDGGFVACGLDIGEIVIWN 936
                 56776.8788*************9986666666665 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 1.2
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 slaf p++++  ++  D ++ +W
  CDO72552.1 957 SLAFYPNNHL--AAYNDSSCTLW 977
                 8999999999..4888****999 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 6.4
                  EEEEEETTSSEEE CS
        WD40   14 tslafspdgawla 26  
                  +s+afs+dg ++a
  CDO72552.1  994 HSVAFSRDGVLIA 1006
                  5899*****9875 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 3
                  SEEEEEEETTSSEEEEEETTSEE CS
        WD40   12 svtslafspdgawlasGsdDgtv 34  
                   vt+la s+d ++++ +   + +
  CDO72552.1 1070 EVTDLALSSDRRLVLVAY-ERRL 1091
                  39***9999999988666.5555 PP

  == domain 9  score: 7.9 bits;  conditional E-value: 0.004
                  TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37  
                  g+c+r+++ H ++ + + +sp+g+++a+ + D  +++W
  CDO72552.1 1099 GECMRVIK-HsGGWHTI-WSPHGDLFACTGPDTMIHVW 1134
                  57888876.75558777.********98899******* PP

  == domain 10  score: 24.1 bits;  conditional E-value: 3e-08
                  TEEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40    1 gqclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38  
                  g+++ t++GH + +t+l+ + ++g+ ++s+s+Dgt+r W+
  CDO72552.1 1139 GRPMATFSGHsKRITALCfTGDEGQQIVSASWDGTIRRWN 1178
                  57899*****888*****7666666699*********998 PP

  == domain 11  score: 8.3 bits;  conditional E-value: 0.003
                  SSEEEEEEETTSSEEEEEET CS
        WD40   11 ssvtslafspdgawlasGsd 30  
                   s+ +la+s+dg+w++s+s+
  CDO72552.1 1198 ESIEALAVSSDGQWILSASW 1217
                  5699************9986 PP

  == domain 12  score: -1.7 bits;  conditional E-value: 4.3
                  S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   10 H.ssvtslafspdgawlasGsdDgtvriWd 38  
                  H  ++ slafs   +  ++G+  g v ++d
  CDO72552.1 1262 HrHWIGSLAFSEGCTRALAGTNGGEVFLYD 1291
                  4346999*9999999988888777777665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.9e-06    0.0088      26      73 ..     727     777 ..     702     784 .. 0.86
   2 !   19.0   0.0   8.7e-07    0.0013      37      90 ..     783     835 ..     779     837 .. 0.93
   3 !   10.2   0.1   0.00049      0.73      35      72 ..     823     860 ..     820     877 .. 0.82
   4 ?    4.0   0.1     0.042        63      38      86 ..     868     913 ..     862     919 .. 0.81
   5 ?    3.3   0.0      0.07     1e+02      33      81 ..     947     993 ..     914     999 .. 0.77
   6 !    7.1   0.0    0.0044       6.6      35      77 ..    1065    1106 ..    1046    1110 .. 0.86
   7 !    8.5   0.0    0.0017       2.5      46      89 ..    1115    1157 ..    1112    1182 .. 0.72
   8 ?   -1.9   0.1       2.9   4.3e+03      44      68 ..    1401    1425 ..    1400    1427 .] 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.9e-06
  ANAPC4_WD40  26 gqrvwtl...eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                   q+vw++   ++++++  + +L+++pdg+ ++ ++++g+v l + ++g  +
   CDO72552.1 727 AQKVWNAtlsSTTSPSDYIYALEFSPDGRYIVSGHEKGAVWLWNTQTGSPL 777
                  59*****9998899999****************************999876 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 8.7e-07
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + + v+s++++p gk +  + +d++v++ d+ ++ ++ +++ +se av +++W+
   CDO72552.1 783 HTGAVSSVSFSPTGKEILSGSHDTTVKIWDVATASCLATWEKHSE-AVLSVTWA 835
                  6789***************************************99.6******7 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00049
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  +k+++ v s+ W pdg l a + +d +v l ++ +g+ 
   CDO72552.1 823 EKHSEAVLSVTWAPDGALAASGSDDRTVVLWHVITGEE 860
                  578899***************************99986 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.042
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  + +v+++ +  +g  L  a +d ++r+ d+++++ ++ l+ +s+  v+c
   CDO72552.1 868 EDQVNHVGFAAKGI-LLSASDDKTCRIWDIHTKTAIRVLRHSSS--VQC 913
                  66889999999985.55788999***********9999887766..655 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.07
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++ +     sLa+ p+++l   ay+d+++ l +a++g++++s +++ +
   CDO72552.1 947 ANPRTRPPLISLAFYPNNHL--AAYNDSSCTLWEASNGELLKSEDISYS 993
                  55555566678999999997..6799**************998776655 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0044
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77  
                   d++d+ev++La + d +l  vay+  ++rll+a++g++++ ++
   CDO72552.1 1065 DDTDGEVTDLALSSDRRLVLVAYE-RRLRLLNASTGECMRVIK 1106
                   6789***********999999996.59**********998765 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0017
  ANAPC4_WD40   46 WkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89  
                   W+p g l+a    d+ +++ + e+g+ + ++s +s+ ++t l +
   CDO72552.1 1115 WSPHGDLFACTGPDTMIHVWETETGRPMATFSGHSK-RITALCF 1157
                   777777777777777777777777777777777776.4666654 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 2.9
  ANAPC4_WD40   44 LaWkpdgklLavaysdgevrlldae 68  
                   ++W  +g+  + +  +g+v l d++
   CDO72552.1 1401 MHWAASGNTVVYVGRQGQVVLADMS 1425
                   68*****************999875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   8.2e-13   1.2e-09       2     137 ..     190     342 ..     189     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 8.2e-13
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-......-HCHHHCCCCTS--SSS-C.......CHHHHCCSCCCEE...... CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna...rsladllfsqlpepaapvse.......vwavllelperlL...... 84 
                 +++++G aG GK+t ++ +a+ w+e+   + +     f++ r+ +rs+     r++a++l+  +p+  ++ ++       +   +++lp + L      
  CDO72552.1 190 ILWIHGLAGFGKSTIARTIAQWWKEDGILGAT-----FFCARDGERSNLRsifRTIAYQLACRYPAFCDALTRvieadpdI---RVSLPSQQLkelive 280
                 68*************************88854.....44555555544447799999999999999999999966664441...555665555666777 PP

                 ................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCT CS
       NACHT  85 ................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdlee 137
                                  ++D+lDe+ ++        + + Ls  i++  l+  ++++t+rp+    + +
  CDO72552.1 281 plksaktqqdfpsriaVVIDALDECTDQEAV---STILKSLSLHISE--LTPLKFVITSRPEEN--ITR 342
                 7777777777777777**********96655...5556666556777..9999********987..444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.6e-08   8.4e-05      24     149 ..     188     307 ..     178     331 .. 0.63
   2 ?   -0.3   0.0      0.84   1.3e+03      72     107 ..     451     499 ..     429     551 .. 0.67
   3 ?    0.5   0.1      0.45   6.7e+02      60     137 ..     637     709 ..     607     711 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.6e-08
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea.srlle 121
                 ++++ ++G +G GKs+++r++++ +++dg++ ++  c + +   ++s l +++ r ++  ql+ +      +a+ ++l+++++a p+++ +++ ++l e
  CDO72552.1 188 SSILWIHGLAGFGKSTIARTIAQWWKEDGILGATFFCARDG---ERSNLRSIF-R-TIAYQLACR-----YPAFCDALTRVIEADPDIRVSLPsQQLKE 276
                 3899******************9999995333555555551...112233333.3.444444444.....33333334444444444444444799999 PP

      AAA_16 122 llkrllallsrder...plvlvlDdlqwade 149
                 l+ + l+ ++++++    + +v+D l+   +
  CDO72552.1 277 LIVEPLKSAKTQQDfpsRIAVVIDALDECTD 307
                 999999999996666444*********7776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.84
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala...............a 107
                  +++l  ++l++q+l++a++++ e +r++l+ +l+               a
  CDO72552.1 451 ALRML--DTLYKQVLNRAREKLDESARARLKIVLGivtlaeerlspasidA 499
                 56666..37899999999999999999999888886666555554444442 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.45
      AAA_16  60 cdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.avpelagaeasrllellkrllallsrderpl 137
                 c     +++++++++al+  + l +  d+++sa+++ ++ kl+   + +v++    ++ +++++ k++++++++ e+pl
  CDO72552.1 637 C-----DTHLLHWLEALSLLGCLDAAVDALQSAQARTDAPKLLHDCErIVRAFYLPISASFFQVYKSAIVFSPT-ESPL 709
                 3.....34577788888555555555555555555555555444444566777777779999999999988888.7665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   8.6e-08   0.00013       6     130 ..     189     333 ..     186     339 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 8.6e-08
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsst..sskdllrellralglelka...................erlsseelle 80 
                 +il ++G +G GK+t +r+++++ +        +++++   f+++  ++  ++++++r ++ +l  +  a                   + ++++el+ 
  CDO72552.1 189 SILWIHGLAGFGKSTIARTIAQWWK--------EDGILgatFFCARDGErsNLRSIFRTIAYQLACRYPAfcdaltrvieadpdirvslPSQQLKELIV 279
                 7899*******************85........555556655555555577***********99977777****************6666666666665 PP

      AAA_22  81 aleqalrarav...ielliiDEaqhlrseealeeL...rsllnlsrkgvqliLvGt 130
                    + ++++++   + +++iD  +  + +ea++++    sl+   + +++l +v+t
  CDO72552.1 280 EPLKSAKTQQDfpsRIAVVIDALDECTDQEAVSTIlksLSLHI--SELTPLKFVIT 333
                 555555555559*************854666666533224444..66666666655 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00023      0.34     175     242 ..     771     834 ..     753     860 .. 0.75
   2 ?    3.1   0.0     0.024        36     178     215 ..     898     936 ..     859     978 .. 0.77
   3 ?    0.2   0.0      0.19   2.9e+02     181     221 ..    1142    1184 ..    1127    1191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
    Ge1_WD40 175 eeieegllkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssll 242
                  ++ + l+ +e h+  +++ +fsp G  +   s+d +vk + v      +  CL  W  h    ls   
  CDO72552.1 771 TQTGSPLVPFEGHTgAVSSVSFSPTGKEILSGSHDTTVKIWDVA-----TASCLATWEKHSEAVLSVTW 834
                 44445678899998799************************986.....567*****999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.024
    Ge1_WD40 178 eegllkieehs.liveaafspdGtalatasedGevkffq 215
                 +++ +++ +hs  + +a+ s+dG  +a     Ge+  + 
  CDO72552.1 898 TKTAIRVLRHSsSVQCATASSDGGFVACGLDIGEIVIWN 936
                 4467777777559**************999999988775 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
    Ge1_WD40  181 llkieehs.liveaafspd.GtalatasedGevkffqvylede 221 
                  +  ++ hs  i+   f+ d G  +  as dG+++ + + ++++
  CDO72552.1 1142 MATFSGHSkRITALCFTGDeGQQIVSASWDGTIRRWNLDVQKD 1184
                  66778888678888998776999***********999877644 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1   0.00055      0.82     233     258 ..     799     825 ..     783     865 .. 0.76
   2 ?    4.1   0.0      0.01        15     229     256 ..     878     906 ..     867     921 .. 0.80
   3 ?   -1.7   0.0      0.57   8.6e+02     232     251 ..    1164    1183 ..    1139    1210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00055
                 EEEEETT-EEEEEETTTTEEEEE.EE- CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat.idl 258
                 +++ s d ++++W+++t++clat    
  CDO72552.1 799 ILSGSHDTTVKIWDVATASCLATwEKH 825
                 556689****************95544 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
                 TTTEEEEEETT-EEEEEETTTTEEEEE.E CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat.i 256
                 ++ +l+++s d++ r+W++ t++ +++ +
  CDO72552.1 878 AKGILLSASDDKTCRIWDIHTKTAIRVlR 906
                 567899****************9998744 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.57
                  EEEEEETT-EEEEEETTTTE CS
      Nup160  232 ylfalsrdgkLrvWnlltgk 251 
                   ++++s dg++r Wnl+ +k
  CDO72552.1 1164 QIVSASWDGTIRRWNLDVQK 1183
                  57899***********9665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.048        72       3      49 ..     745     791 ..     743     808 .. 0.81
   2 ?    2.5   0.0      0.05        75       3      47 ..     787     831 ..     785     837 .. 0.91
   3 ?    5.3   0.0    0.0069        10       3     108 ..     829     936 ..     827     939 .. 0.84
   4 ?   -1.3   0.0       0.7   1.1e+03       9      71 ..    1116    1180 ..    1115    1191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.048
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvk 49 
                 iY++++s++g +i+ G ++  + + +++++     +e+ +  v  v 
  CDO72552.1 745 IYALEFSPDGRYIVSGHEKGAVWLWNTQTGSPLVPFEGHTGAVSSVS 791
                 9************************9999999888888777665555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.05
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvif 47 
                 + s+ +s+ g+ il G++d ++++ ++ +       e+ ++ v+ 
  CDO72552.1 787 VSSVSFSPTGKEILSGSHDTTVKIWDVATASCLATWEKHSEAVLS 831
                 56899***************************9999999999875 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0069
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevenekieedistvk..viddklliGt 99 
                 + s+   ++g l + G++d ++ + ++ ++e+  ++ + ed v +v +  +  +l ++ D t    +++ +  ++  +    + +++   +++ ++ G 
  CDO72552.1 829 VLSVTWAPDGALAASGSDDRTVVLWHVITGEEPVVLLGHEDQVNHVGFAAKGILLSASDDKTCRIWDIHTKTAIRVLRHSSSVQCATasSDGGFVACGL 927
                 678889999****************************************************99999999999887777766666554005556788888 PP

   WD40_like 100 nkGsiyvfs 108
                 + G+i +++
  CDO72552.1 928 DIGEIVIWN 936
                 889888775 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.7
   WD40_like    9 skkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd..lilvvtlDGtillslle 71  
                  s++g+l++  g d  + v ++e++  +  + + +  +    +  d+  +i+ ++ DGti    l 
  CDO72552.1 1116 SPHGDLFACTGPDTMIHVWETETGRPMATFSGHSKRITALCFTGDEgqQIVSASWDGTIRRWNLD 1180
                  567889999999999999************99999999999988877789999******776665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.5e-05     0.082      18      42 ..     186     210 ..     178     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
                 SCSEEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  18 lqslvvalvGmgGvGKttlakqiln 42 
                 ++s ++ ++G +G GK+t+a+ i +
  CDO72552.1 186 PGSSILWIHGLAGFGKSTIARTIAQ 210
                 67889****************9976 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   3.3e+03      21      48 ..     731     758 ..     727     766 .. 0.82
   2 ?    9.4   0.0   0.00031      0.47      35     160 ..     787     924 ..     779     936 .. 0.84
   3 ?   -1.9   0.0      0.84   1.3e+03     122     179 ..     968    1025 ..     961    1044 .. 0.82
   4 ?   -2.6   0.0       1.4   2.1e+03     120     168 ..    1083    1131 ..    1066    1173 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  21 lslqlkelgsieiypqslshnpngrfvl 48 
                     + +l +  s + y+ +l+++p+gr+++
     CDO72552.1 731 WNATLSSTTSPSDYIYALEFSPDGRYIV 758
                    56677888899999***********986 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00031
                    XXXXXXXXXXXXXXX.XXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXX.XXXXXXXXXXXXXXXXXXX...XXX CS
  Coatomer_WDAD  35 pqslshnpngrfvlV.cgdgeyiiyt.....alalrnkaygkgldfvwvssnrfavles.sksvkifknf.kekktksikleyqvdkifg...Gal 119
                    + s+s++p+g+ +l    d + +i        la  +k     l+++w++ ++ a+  s  ++v++ + +  e+ +  + +e qv+ +     G l
     CDO72552.1 787 VSSVSFSPTGKEILSgSHDTTVKIWDvatasCLATWEKHSEAVLSVTWAPDGALAASGSdDRTVVLWHVItGEEPVVLLGHEDQVNHVGFaakGIL 882
                    5689999999999987445555555466687788889999999**********999999899999988775666778899999999996679**** PP

                    XXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
  Coatomer_WDAD 120 LgvksegsvsfYDweqgklvrridvkk.vknVvwsddgelva 160
                    L ++++++  ++D+ +++ +r ++ ++ v+    s dg +va
     CDO72552.1 883 LSASDDKTCRIWDIHTKTAIRVLRHSSsVQCATASSDGGFVA 924
                    ***********************9887699999999999888 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.84
                     XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
  Coatomer_WDAD  122 vksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyilsynleavee 179 
                     + +++s ++++  +g+l+++ d++  + V  s dg l+al++ + +++ + ++ +ve+
     CDO72552.1  968 AYNDSSCTLWEASNGELLKSEDISYSHSVAFSRDGVLIALAEASRMTVQEWSSGVVEQ 1025
                     556677888899999999999999889**************99999998877776665 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.4
                     XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  120 LgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvy 168 
                      +v  e  + + +  +g+  r i+ +   + +ws+ g+l+a +  dt++
     CDO72552.1 1083 VLVAYERRLRLLNASTGECMRVIKHSGGWHTIWSPHGDLFACTGPDTMI 1131
                     3444444466666666677777777766677777777777777555443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.26      20      53 ..     190     225 ..     184     234 .. 0.81
   2 ?   -3.4   0.0       4.6   6.9e+03     118     133 ..     861     876 ..     852     915 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
      AAA_30  20 vavltGpAGtGKttalkalreaweaag..grviglA 53 
                 +  ++G AG GK+t+ +++++ w+++g  g  + +A
  CDO72552.1 190 ILWIHGLAGFGKSTIARTIAQWWKEDGilGATFFCA 225
                 67799*******************999555555555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
      AAA_30 118 kvilvGDerQlasVea 133
                  v+l+G e+Q + V+ 
  CDO72552.1 861 PVVLLGHEDQVNHVGF 876
                 5899999999998875 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014      0.21     171     197 ..     291     318 ..     192     338 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
  KAP_NTPase 171 lqkrlVvviDdLDrceteevlq.lleav 197
                   +r+ vviD+LD c+++e+++ +l+ +
  CDO72552.1 291 FPSRIAVVIDALDECTDQEAVStILKSL 318
                 368************9877765155554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.45
# Mc/sec: 9511.25
//
Query:       CDO72553.1  [L=913]
Description: hypothetical protein BN946_scf184983.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.1e-106  354.6   0.1   7.3e-106  354.0   0.1    1.2  1  Plavaka      Plavaka transposase
     0.0024   17.8   0.8     0.0069   16.4   0.8    1.8  1  zf-C2H2_6    C2H2-type zinc finger
     0.0045   17.3   0.4      0.017   15.5   0.4    2.1  1  zf-met       Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.034   15.0   0.6       0.65   11.0   1.1    3.0  2  zf-C2H2_4    C2H2-type zinc finger
      0.096   13.0   1.0       0.25   11.7   0.6    1.9  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
        2.9    8.5   6.3       0.81   10.3   1.5    2.8  3  zf-C2H2      Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.0   0.1  2.4e-109  7.3e-106       1     324 []     121     451 ..     121     451 .. 0.94

  Alignments for each domain:
  == domain 1  score: 354.0 bits;  conditional E-value: 2.4e-109
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgd...... 93 
                 F++a++Ll++iD+lp g+++w s+ ++++g++++++p+w++++y +++r+pl+v +++ g+ df +  dy+P++e+    +g+++ys++m+g+      
  CDO72553.1 121 FESADDLLSHIDALPFGEAPWISFRIRYAGHVDANSPSWKRHTYIVHMRNPLRVAENMAGSADFLGTWDYTPFEEFL--GEGCQRYSNLMSGRchssmd 217
                 99***************************************************************************..789*********97444444 PP

     Plavaka  94 ....waweqq......ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipkl.kkikkskefrklfkr 180
                     wa++q+      i+e+p  eg++l p+il+ DKTt sv+tg+++++PvY+s+Gni++e+r+ a+r+avv+la+Lpip + +++++++efr  f++
  CDO72553.1 218 hdsrWAYKQAllqdtiITEHPeLEGTMLTPIILGADKTTCSVATGHQSFHPVYISLGNIHNEMRQ-AHRDAVVPLAFLPIPTCaREHENDEEFRI-FRK 314
                 444477777798888655666688*****************************************.*****************899988888888.*** PP

     Plavaka 181 qlfHaclarilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwk 279
                 q++Ha+la+il+pL+++++ ++vm+c+dgh+rr+i+ l+++iaDypEqv+++++ qgwCpk++a+   +       +r  + ++e+l+e+++    l++
  CDO72553.1 315 QVYHAALAQILAPLRPGMTVPHVMRCPDGHFRRAIFELGPFIADYPEQVYLSGVLQGWCPKSEAHVCLM------LPRADNVHTECLHETFT-SAVLYD 406
                 **************************************************************9998765......68888888999999997.899*** PP

     Plavaka 280 eyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                  +g++++++pF++++pradihelltpDlLHqlikg+fkdHlv+Wv
  CDO72553.1 407 VFGVVADVKPFTSHFPRADIHELLTPDLLHQLIKGTFKDHLVTWV 451
                 ********************************************8 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   2.3e-06    0.0069       4      26 ..       5      27 ..       3      27 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
   zf-C2H2_6  4 CsvCsksFpslqaLggHkksHrk 26
                C++C++sF+s+   + H++++++
  CDO72553.1  5 CDICKRSFSSQNGFNDHNYRYHQ 27
                ******************99885 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   5.6e-06     0.017       2      19 ..       4      21 ..       3      23 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.6e-06
      zf-met  2 yCelCnvtfnsesqlksH 19
                +C++C+++f+s++ +++H
  CDO72553.1  4 FCDICKRSFSSQNGFNDH 21
                6****************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   0.00022      0.65       3      19 ..       5      21 ..       3      26 .. 0.94
   2 ?   -1.9   0.0         3   8.9e+03      10      20 ..     121     131 ..     119     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
   zf-C2H2_4  3 CpiCgksFsskkaLlrH 19
                C+iC++sFss++++++H
  CDO72553.1  5 CDICKRSFSSQNGFNDH 21
                **************999 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3
   zf-C2H2_4  10 FsskkaLlrHl 20 
                 F s ++Ll+H+
  CDO72553.1 121 FESADDLLSHI 131
                 9999******7 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   8.3e-05      0.25       3      20 ..       4      21 ..       3      22 .. 0.95
   2 ?   -4.0   0.0         6   1.8e+04      11      21 ..     121     131 ..     120     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.3e-05
                 BBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz  3 YCvlCdKyFksenaldnH 20
                 +C +C++ F+s+n +  H
   CDO72553.1  4 FCDICKRSFSSQNGFNDH 21
                 7************99999 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
                  BSSHHHHHCCT CS
  zf-C2H2_jaz  11 FksenaldnHl 21 
                  F+s+ +l  H+
   CDO72553.1 121 FESADDLLSHI 131
                  99999**9997 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5   0.00027      0.81       3      23 .]       5      26 ..       4      26 .. 0.90
   2 ?   -2.0   0.0       2.1   6.2e+03      10      20 ..     121     131 ..     120     132 .. 0.89
   3 ?   -2.9   0.3         4   1.2e+04      14      21 ..     162     169 ..     160     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
                ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  3 CpdCgksFkrksnLkrHirt.H 23
                C++C++sF+++  ++ H  + H
  CDO72553.1  5 CDICKRSFSSQNGFNDHNYRyH 26
                *****************77766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                 ESSHHHHHHHH CS
     zf-C2H2  10 FkrksnLkrHi 20 
                 F + ++L +Hi
  CDO72553.1 121 FESADDLLSHI 131
                 8899******8 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4
                 HHHHHHHH CS
     zf-C2H2  14 snLkrHir 21 
                 + + +H+r
  CDO72553.1 162 HTYIVHMR 169
                 67889998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 6504.92
//
Query:       CDO72554.1  [L=706]
Description: hypothetical protein BN946_scf184983.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4689.57
//
Query:       CDO72555.1  [L=541]
Description: hypothetical protein BN946_scf184983.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 3428.32
//
Query:       CDO72556.1  [L=309]
Description: hypothetical protein BN946_scf184983.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2177.55
//
Query:       CDO72557.1  [L=480]
Description: hypothetical protein BN946_scf184983.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-51  173.4   0.5    7.1e-51  172.3   0.5    1.6  1  Cnd1_N         non-SMC mitotic condensation complex subunit 1
     0.0078   16.4   0.0      0.018   15.2   0.0    1.7  1  DehI           Halocarboxylic acid dehydrogenase DehI
  ------ inclusion threshold ------
      0.033   14.5   0.0      0.077   13.3   0.0    1.6  1  FKS1_dom1      1,3-beta-glucan synthase subunit FKS1, domain-
      0.048   12.1   0.0      0.091   11.2   0.0    1.3  1  Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehyd
        1.6    7.7   5.5       0.44    9.6   1.1    2.3  2  RELT           Tumour necrosis factor receptor superfamily me


Domain annotation for each model (and alignments):
>> Cnd1_N  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.5     2e-54   7.1e-51       2     166 .]      75     250 ..      74     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 2e-54
      Cnd1_N   2 klksklldlllsglsallesvesdlessdeadsvashknaLemygfllqwlvealekessskssaasasa........rgrkkk....kkkkkkkeeaw 88 
                 ++++k+ld+++s+  a+le+  +d++ +++++++ +hk +Lemy+fll w+v+a++k+++  +++ +a++         gr++k    ++ ++k  e+w
  CDO72557.1  75 SHMTKILDSISSAYLAHLEAAVRDVD-EEDQHTFMAHKMPLEMYAFLLNWFVSAAKKVKAAGDDDLPAQTtttttkskHGRGGKaaasRSTARKPSEEW 172
                 6899**********************.5669****************************99998855555666777777777779999999******** PP

      Cnd1_N  89 dweaqrerileliakvlelklsrlfqttserdeFislftrpaysllEneallKdksirdaifkvlclavkkhghalaa 166
                 +w++q++++l+li++vl lk +r++qt++er++Fi++++rp+y+++Ene+++K+++ir a++k +clavk+ gh laa
  CDO72557.1 173 SWQDQIPHTLKLISHVLHLKSQRIWQTSAERENFINCVVRPVYHVMENEQFMKSADIRRAVYKAICLAVKHQGHILAA 250
                 **************************************************************************9876 PP

>> DehI  Halocarboxylic acid dehydrogenase DehI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     5e-06     0.018       6      48 ..     196     237 ..     194     294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5e-06
        DehI   6 iFralAnypeflrlawqqlkpaletkeFeaaAaalreevlsdv 48 
                 i+++ A+ ++f++++++ ++ ++e ++F ++A+ +r  v+ ++
  CDO72557.1 196 IWQTSAERENFINCVVRPVYHVMENEQFMKSAD-IRRAVYKAI 237
                 8****************************9997.666677666 PP

>> FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.077      52      94 ..     185     228 ..     160     237 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
   FKS1_dom1  52 leeileekvse.aaaseeeesfLkkvitPlyevlrkqeaeknke 94 
                 ++++l+ k ++  ++s e e+f++ v++P+y+v++++++ k+ +
  CDO72557.1 185 ISHVLHLKSQRiWQTSAERENFINCVVRPVYHVMENEQFMKSAD 228
                 44445444444567788999**************9988887655 PP

>> Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05     0.091     117     177 ..     210     270 ..     207     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
                    HTS-EEEE--HHHHHHHS-EEEEEEEEEEEEE-TTS-EEEEEEEEEEEESSTHHHCHCCHC CS
  Ald_Xan_dh_C2 117 tgrpVklvldReedmlatgkrhpfkikykvgadkdGkitaldvdlladaGayadlspavle 177
                    + rpV  v++ e+ m ++  r++++  + ++++ +G+i+a ++ +++   +y +l+++++e
     CDO72557.1 210 VVRPVYHVMENEQFMKSADIRRAVYKAICLAVKHQGHILAAQISIMQSLQYYEHLAEPMAE 270
                    569**********************************************999999988876 PP

>> RELT  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.55     2e+03      15      23 ..     348     356 ..     345     356 .. 0.82
   2 ?    9.6   1.1   0.00012      0.44       5      23 ..     435     453 ..     431     454 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.55
        RELT  15 LlGvLiChv 23 
                 L+G +iC +
  CDO72557.1 348 LIGSIICKL 356
                 99*****75 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
        RELT   5 vLVpvFflmGLlGvLiChv 23 
                 +L p F +m L+Gv++C++
  CDO72557.1 435 FLRPRFLVMSLIGVIVCNL 453
                 56688************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3311.91
//
Query:       CDO72558.1  [L=917]
Description: hypothetical protein BN946_scf184983.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-05   23.3   0.1    8.5e-05   21.9   0.0    1.6  2  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.8e-09   8.5e-05      40     148 ..     299     405 ..     285     416 .. 0.88
   2 ?   -3.4   0.0      0.26   4.6e+03      40      63 ..     572     595 ..     569     598 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.8e-09
  Transposase_21  40 nPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalkeekfnlravllwtindfPal 134
                       ++  s++   W  + + + l P    k++++l   +i Gp++P k++d ++ P +     l  eG++ ++a +++ +     ll +  d P++
      CDO72558.1 299 QLYQ--SKASDSWFYIWVIFELSPDRRYKKRYVLPGGVIGGPNKP-KNVDSFMYPGLYHTAALQLEGLSLWNAAENRLYISYIYLLLAGADRPGM 390
                     5554..455568999******************************.79*********************************************** PP

  Transposase_21 135 stlsGlstk.gklac 148
                     ++lsGl+ + g ++c
      CDO72558.1 391 AYLSGLVGHlGRYGC 405
                     *****9876355555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.26
  Transposase_21  40 nPfgsmsssysvWpvllipynlPP 63 
                     nP  +++s y  W  l   y l P
      CDO72558.1 572 NPAEKLTSGYKAWEFLTYVYGLLP 595
                     99999*********9999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6447.50
//
Query:       CDO72559.1  [L=1481]
Description: hypothetical protein BN946_scf184983.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-28   97.1  38.1    4.2e-06   27.4   0.2   11.6 12  WD40           WD domain, G-beta repeat
      6e-14   52.1   4.2      0.069   13.4   0.1    8.2 10  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.7e-10   41.0   0.0      1e-09   38.5   0.0    2.3  2  NACHT          NACHT domain
    6.6e-07   29.9   0.2      5e-06   27.0   0.0    2.5  2  AAA_16         AAA ATPase domain
     0.0075   16.5   0.0      0.027   14.7   0.0    2.0  1  AAA_22         AAA domain
     0.0083   15.4   0.0      0.015   14.6   0.0    1.4  1  KAP_NTPase     KAP family P-loop domain
     0.0095   15.2   0.0      0.018   14.2   0.0    1.3  1  NB-ARC         NB-ARC domain
  ------ inclusion threshold ------
      0.011   14.5   0.3        3.4    6.2   0.2    3.3  4  Nup160         Nucleoporin Nup120/160
      0.023   14.6   3.9      0.088   12.8   0.1    3.9  5  PD40           WD40-like Beta Propeller Repeat
      0.049   12.7   0.0        8.6    5.3   0.0    2.4  2  Coatomer_WDAD  Coatomer WD associated region
       0.15   10.7   0.0       0.47    9.1   0.0    1.7  2  DUF5018        Domain of unknown function (DUF5018)
        0.2   12.1   0.0        3.3    8.1   0.0    2.6  2  AAA            ATPase family associated with various cellular


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.9   4.3e+03       2      16 ..     185     197 ..     184     205 .. 0.70
   2 !    8.5   0.3    0.0027         4      12      30 ..     798     819 ..     789     828 .. 0.72
   3 !   27.4   0.2   2.8e-09   4.2e-06       7      38 .]     838     870 ..     832     870 .. 0.91
   4 !   23.2   0.8     6e-08     9e-05       2      37 ..     875     911 ..     874     912 .. 0.91
   5 !   21.2   0.0   2.6e-07   0.00039       6      38 .]     921     953 ..     916     953 .. 0.87
   6 ?    5.1   0.0      0.03        45       2      37 ..     958     993 ..     957     994 .. 0.81
   7 ?    2.7   0.1      0.18   2.7e+02      12      37 ..    1010    1036 ..     996    1037 .. 0.69
   8 !    8.4   0.1    0.0029       4.3      10      37 ..    1162    1189 ..    1149    1190 .. 0.83
   9 !   17.1   0.0   4.9e-06    0.0073       1      38 []    1194    1233 ..    1194    1233 .. 0.81
  10 ?    1.0   0.0      0.59   8.9e+02      13      28 ..    1255    1271 ..    1248    1275 .. 0.74
  11 ?    0.4   0.1      0.94   1.4e+03       9      36 ..    1316    1344 ..    1309    1346 .. 0.73
  12 ?   -2.4   0.0       7.1   1.1e+04      13      23 ..    1381    1391 ..    1372    1395 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.9
                 EEEEEEESSSSEEEE CS
        WD40   2 qclrtltGHssvtsl 16 
                 +c++tl+ H  ++s+
  CDO72559.1 185 ECVKTLSWH--IHSF 197
                 89*****99..5444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0027
                 S...EEEEEEETTSSEEEEEET CS
        WD40  12 s...vtslafspdgawlasGsd 30 
                 +   +t+l+fs+d ++++sG++
  CDO72559.1 798 PggaITALDFSSDERYIVSGHR 819
                 3445****************84 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 2.8e-09
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++GH ++++s++fsp  + ++sGs D tv++Wd
  CDO72559.1 838 FEGHtGHICSVSFSPTAKEFLSGSGDTTVKLWD 870
                 8899888****************99*******9 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 6e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +cl t+  H   v+s+a+s dga+ asGs D+tv +W
  CDO72559.1 875 TCLATWQKHsEAVSSVAWSLDGALAASGSVDKTVVLW 911
                 59999999*555************************* PP

  == domain 5  score: 21.2 bits;  conditional E-value: 2.6e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l GH + v+++ f  +g +l s+sdD+t+r+Wd
  CDO72559.1 921 VLLGHeDQVNHVGFAAEGILL-SASDDKTCRVWD 953
                 566**777************8.6888*******9 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.03
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++r+l+ H ssv  +a s+ g ++a+G   g v iW
  CDO72559.1 958 KPIRVLR-HsSSVQRVAASSGGELIACGLVTGDVDIW 993
                 6899998.8788*************988556666666 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.18
                  S..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   12 s..vtslafspdgawlasGsdDgtvriW 37  
                  +  v slaf+pd ++  ++ +  ++ +W
  CDO72559.1 1010 FnrVISLAFHPDDHLA-AAYEHSSCILW 1036
                  23467999*****995.57777777777 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.0029
                  SSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   10 HssvtslafspdgawlasGsdDgtvriW 37  
                  Hs+   +a+s+ g+++a+ + D  +++W
  CDO72559.1 1162 HSDAQRIAWSSAGDFFACTGQDDAIYLW 1189
                  54556789********98899******* PP

  == domain 9  score: 17.1 bits;  conditional E-value: 4.9e-06
                  TEEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40    1 gqclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38  
                  g+++ tl GH  ++++l+ + ++g+ ++s+s Dgt+r W+
  CDO72559.1 1194 GRPIATLAGHsMDINALCfTGDEGQQIISASHDGTIRRWN 1233
                  57899*****666****965555555888888*****998 PP

  == domain 10  score: 1.0 bits;  conditional E-value: 0.59
                  EEEEEEETTSSEEE.EE CS
        WD40   13 vtslafspdgawla.sG 28  
                  + +la+s dg+w++ ++
  CDO72559.1 1255 IDALAVSADGQWILfAS 1271
                  66899*******85244 PP

  == domain 11  score: 0.4 bits;  conditional E-value: 0.94
                  SS.SSEEEEEEETTSSEEEEE.ETTSEEEE CS
        WD40    9 GH.ssvtslafspdgawlasG.sdDgtvri 36  
                   H +++ s+afs d +  ++G +  g++ +
  CDO72559.1 1316 NHdGWIFSVAFSEDRTRALAGiD-TGKIFL 1344
                  58667*********999877755.555555 PP

  == domain 12  score: -2.4 bits;  conditional E-value: 7.1
                  EEEEEEETTSS CS
        WD40   13 vtslafspdga 23  
                  + +++fspd++
  CDO72559.1 1381 IFHIKFSPDNR 1391
                  8899*****87 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.8   1.3e+04      34      48 ..     180     194 ..     161     198 .. 0.70
   2 !    7.1   0.0    0.0044       6.6      17      89 ..     775     850 ..     757     853 .. 0.71
   3 !   13.4   0.1   4.6e-05     0.069      37      90 ..     841     893 ..     836     895 .. 0.92
   4 !   11.5   0.4   0.00019      0.29      34      75 ..     880     921 ..     868     937 .. 0.79
   5 ?    2.2   0.0      0.15   2.3e+02      38      80 ..     926     967 ..     923     974 .. 0.79
   6 ?    4.0   0.0     0.041        62      28      80 ..     950    1008 ..     943    1011 .. 0.83
   7 !   10.8   0.0   0.00032      0.48       8      75 ..     979    1046 ..     972    1058 .. 0.85
   8 ?    1.4   0.0      0.27     4e+02      28      59 ..    1111    1144 ..    1095    1165 .. 0.72
   9 !    9.0   0.0    0.0011       1.7      34      87 ..    1158    1210 ..    1144    1216 .. 0.83
  10 ?   -2.7   0.0       5.1   7.6e+03      46      67 ..    1457    1478 ..    1456    1480 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.8
  ANAPC4_WD40  34 edkedsevrsLaWkp 48 
                  ++k ++ v+ L+W+ 
   CDO72559.1 180 DEKVEECVKTLSWHI 194
                  456677888899875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0044
  ANAPC4_WD40  17 gellvfRlngqrvwtl...eedkedsevrsLaWkpdgklLavaysdge.vrlldaesgkvvhslsvksekavtclgW 89 
                   +l+ f    ++ w++   +++++++ +++L ++ d++ ++ ++  ++ v l + ++g+ + +++ ++ + ++++++
   CDO72559.1 775 RSLVQFLRGAEKAWSTtlsSTPSPGGAITALDFSSDERYIVSGHRFSAvVWLWSTQTGTGLVAFEGHTGH-ICSVSF 850
                  3344444455889999899899**********************98761567888999988888888774.777665 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 4.6e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + +++ s++++p  k +  +  d++v+l d+ +++++ +++ +se av+++ W+
   CDO72559.1 841 HTGHICSVSFSPTAKEFLSGSGDTTVKLWDVATATCLATWQKHSE-AVSSVAWS 893
                  6788999************************************99.6******7 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00019
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                   +k+++ v+s+aW+ dg l a +  d +v l ++ +g+    
   CDO72559.1 880 WQKHSEAVSSVAWSLDGALAASGSVDKTVVLWHVTTGEEPLV 921
                  4788999*****************************986555 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.15
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  + +v+++ +  +g +L  a +d ++r+ da+s k ++ l+ +s
   CDO72559.1 926 EDQVNHVGFAAEG-ILLSASDDKTCRVWDASSNKPIRVLRHSS 967
                  5678888888877.566788999***********998877665 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.041
  ANAPC4_WD40   28 rvwtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80  
                   rvw++          ++s+v+ +a +  g+l+a +   g v + +  +g+ ++sl +++
   CDO72559.1  950 RVWDAssnkpiRVLRHSSSVQRVAASSGGELIACGLVTGDVDIWNQGDGHRLRSLACSR 1008
                   56666555444445678999999***************************999999876 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00032
  ANAPC4_WD40    8 DLiAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75  
                   +LiA +  +g++ +    +g+r+ +l+ + + ++v sLa++pd++ La ay+ +++ l +++sg++++ 
   CDO72559.1  979 ELIACGLVTGDVDIWNQgDGHRLRSLACSRSFNRVISLAFHPDDH-LAAAYEHSSCILWSVSSGQLLKD 1046
                   688888888888876554999999998899999**********98.799***************99864 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.27
  ANAPC4_WD40   28 rvwtl..eedkedsevrsLaWkpdgklLavaysd 59  
                   r  +   e+++  +ev +L+ +pd +l+ vay  
   CDO72559.1 1111 RALGSmmEKEEGAGEVLGLSLSPDRRLILVAYRH 1144
                   44444557788899*****************975 PP

  == domain 9  score: 9.0 bits;  conditional E-value: 0.0011
  ANAPC4_WD40   34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87  
                   +d + s  + +aW+  g ++a   +d ++ l + ++g+ + +l  +s + ++ l
   CDO72559.1 1158 RDIKHSDAQRIAWSSAGDFFACTGQDDAIYLWETKTGRPIATLAGHSMD-INAL 1210
                   5567788999******************************999888774.6665 PP

  == domain 10  score: -2.7 bits;  conditional E-value: 5.1
  ANAPC4_WD40   46 WkpdgklLavaysdgevrllda 67  
                   W  +g+  a   ++g++ l+d+
   CDO72559.1 1457 WAASGNTVAYTQEQGQLILMDV 1478
                   8889999999999999999887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   6.8e-13     1e-09       2     163 ..     253     437 ..     252     440 .. 0.77
   2 ?   -2.5   0.0       2.7   4.1e+03     119     150 ..    1030    1056 ..    1024    1061 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 6.8e-13
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.......-HCHHHCCCCTS--SSS-C......................... CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna....rsladllfsqlpepaapvse......................... 71 
                 +++++G aG GK+tL+q +a+ w e+k  + +      ++++++ +++++    r++a++l+  +p   ++                            
  CDO72559.1 253 ILWIHGLAGFGKSTLAQTVAQWWDEDKILGAT------FFCARDGDRSDVrciyRTIAYQLACRFPGFHDALLDvlkadpdvsasfpvqqlkklivepl 345
                 68*************************88854......55555555556646787777777777777777766688889999999************** PP

                 .CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTT.TT--EEEEEEECCCHHHHCTTSSCE........EEEE--TCCHHHHHHHHC CS
       NACHT  72 .vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkl.lpeasllltvrpralrdleeqleea......ivlevegfsesrrkqlvrky 162
                  v + +   p+r++ ++D+lDe+ +  g+     v   L++l +  + l+  ++++t+rp+    + +++  +      ++l + ++ e  +kq v+ +
  CDO72559.1 346 sVAKARGGFPHRIVVVIDALDECTD-EGA-----VSIILKSLSQHVSeLQPLRFVITSRPEEN--ISRGFLLEalranaQHLSLTEIPEALAKQDVSNF 436
                 ***********************98.444.....4555555555432299999*******998..4444333335666788888888888877777666 PP

                 T CS
       NACHT 163 f 163
                 +
  CDO72559.1 437 L 437
                 5 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.7
                  T--EEEEEEECCCHHHHCTTSSCE..EEEE-- CS
       NACHT  119 peasllltvrpralrdleeqleeaivlevegf 150 
                   ++++l++v++++l  l+  +  +   +  +f
  CDO72559.1 1030 HSSCILWSVSSGQL--LKDEFNNS---QTTAF 1056
                  5799*********9..88888877...44445 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   3.3e-09     5e-06      10     167 ..     235     391 ..     232     395 .. 0.74
   2 ?   -1.2   0.0       1.6   2.3e+03      72     107 ..     514     580 ..     493     618 .. 0.64

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.3e-09
      AAA_16  10 eqLlsalervrsgrp..elvllsGesGvGKsslvrellralekd...ggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekle 102
                 e++++ +++++++ p  +++ ++G +G GKs+l++++++ + +d   g+ f  + + d++         ++++ r ++  ql+ +     ++ ++++l+
  CDO72559.1 235 EEVRHDVNKLAADFPnsSILWIHGLAGFGKSTLAQTVAQWWDEDkilGATFfCARDGDRS--------DVRCIYR-TIAYQLACR-----FPGFHDALL 319
                 5666666777777777799*******************9999996664333344444444........6999966.999999866.....9999999** PP

      AAA_16 103 ealaavpelagaea.srllellkrllallsrder.p..lvlvlDdlqwade.aslql.laaLlrllesk.pl 167
                 ++l+a p+++++ + ++l  l+ + l+ ++ ++  p  +v+v+D l+   + +  ++ l++L + ++   pl
  CDO72559.1 320 DVLKADPDVSASFPvQQLKKLIVEPLSVAKARGGfPhrIVVVIDALDECTDeGAVSIiLKSLSQHVSELqPL 391
                 ****7777777777888888888888666665556255*********7655366666788888888774466 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala.................................a 107
                  ++ l  + l++q+l++a++++ + +r++l+  l+                                 a
  CDO72559.1 514 ALRKL--DALYEQVLARAAEKLDDTARARLKVILGtvtlaeellspasidilldlnlgdvrrilpvlnA 580
                 55666..36888888888888888999988888886666555555555555544444444444444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.8e-05     0.027       6      65 ..     252     308 ..     249     400 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsst..sskdllrellralg 65 
                 +il ++G +G GK+tl+++++++ de++         +   f+++  +   + + ++r ++ +l 
  CDO72559.1 252 SILWIHGLAGFGKSTLAQTVAQWWDEDKI--------LgatFFCARDGDrsDVRCIYRTIAYQLA 308
                 7899*******************986533........2332222222223344444555544444 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.9e-06     0.015     173     211 ..     356     396 ..     158     404 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.9e-06
  KAP_NTPase 173 krlVvviDdLDrceteevlqll..eavkllfslkpvvfila 211
                  r+VvviD+LD c++e +++++   + +++ +l+p  f++ 
  CDO72559.1 356 HRIVVVIDALDECTDEGAVSIIlkSLSQHVSELQPLRFVIT 396
                 69***************999764457788888888888886 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05     0.018      10      42 ..     242     273 ..     234     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                 HHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  10 ekLlekdelqslvvalvGmgGvGKttlakqiln 42 
                 +kL   d ++s ++ ++G +G GK+tla+ + +
  CDO72559.1 242 NKLA-ADFPNSSILWIHGLAGFGKSTLAQTVAQ 273
                 6777.7778899*****************9976 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0023       3.4     238     271 ..     862     892 ..     854     911 .. 0.86
   2 ?    3.3   0.0     0.018        26     230     257 ..     937     965 ..     927     979 .. 0.78
   3 ?   -0.3   0.0      0.21   3.2e+02     494     530 ..    1115    1151 ..    1105    1156 .. 0.87
   4 ?   -3.3   0.0       1.7   2.6e+03     233     248 ..    1220    1235 ..    1211    1237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0023
                 TT-EEEEEETTTTEEEEE.EE--.-SSSTTS--SS CS
      Nup160 238 rdgkLrvWnlltgkclat.idllrdeeaqdesssk 271
                  d ++++W+++t++clat +  +    ++++s+++
  CDO72559.1 862 GDTTVKLWDVATATCLATwQKHS----EAVSSVAW 892
                 599***************88877....77777777 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.018
                 TTEEEEEETT-EEEEEETTTTEEEEE.EE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat.id 257
                 + +l+++s d++ rvW+ +++k++++ + 
  CDO72559.1 937 EGILLSASDDKTCRVWDASSNKPIRVlRH 965
                 56899*****************9998444 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.21
                  HHHHTSSSSG-EEEEEEBTTTTBEEEEETTEEEEEE- CS
      Nup160  494 lceeldkaaseplsLsldpqadvpwlirrdslslirp 530 
                   ++e ++ a+e l+Lsl+p+   +++ +r +l+l+++
  CDO72559.1 1115 SMMEKEEGAGEVLGLSLSPDRRLILVAYRHRLGLVNA 1151
                  5677788899***********************9986 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.7
                  EEEEETT-EEEEEETT CS
      Nup160  233 lfalsrdgkLrvWnll 248 
                  + ++s dg++r Wnl+
  CDO72559.1 1220 IISASHDGTIRRWNLD 1235
                  678999********97 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.8   4.2e+03       7      17 ..    1058    1069 ..    1053    1070 .. 0.65
   2 ?   -2.9   0.0       4.9   7.3e+03      15      23 ..    1130    1138 ..    1129    1142 .. 0.85
   3 ?   -3.1   0.0       5.6   8.4e+03      21      30 ..    1166    1175 ..    1164    1187 .. 0.68
   4 ?   12.8   0.1   5.9e-05     0.088      12      30 ..    1256    1274 ..    1251    1280 .. 0.82
   5 ?   -1.0   0.0       1.3   1.9e+03       6      22 ..    1316    1332 ..    1316    1334 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.8
                  SSS..EEEEEE- CS
        PD40    7 tpg.negaPsfS 17  
                  ++g ++  Ps+S
  CDO72559.1 1058 QNGlHIAYPSWS 1069
                  445577788887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.9
                  EE-TTSSEE CS
        PD40   15 sfSPDGkrl 23  
                  s+SPD + +
  CDO72559.1 1130 SLSPDRRLI 1138
                  78***9987 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.6
                  SEEEEEEECT CS
        PD40   21 krlaFsSdRg 30  
                  +r+a+sS ++
  CDO72559.1 1166 QRIAWSSAGD 1175
                  7999999665 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 5.9e-05
                  EEEEE-TTSSEEEEEEECT CS
        PD40   12 gaPsfSPDGkrlaFsSdRg 30  
                   a ++S DG+++ F+S+++
  CDO72559.1 1256 DALAVSADGQWILFASRKD 1274
                  56689************87 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.3
                  SSSS.EEEEEE-TTSSE CS
        PD40    6 ntpgnegaPsfSPDGkr 22  
                  n++g++++ +fS D +r
  CDO72559.1 1316 NHDGWIFSVAFSEDRTR 1332
                  8999********99987 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0057       8.6      37     160 ..     847     982 ..     840     995 .. 0.76
   2 ?    4.5   0.0    0.0099        15      37      87 ..    1128    1181 ..    1110    1198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0057
                    XXXXXXXXXXXXX.XXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXX.XXXXXXXXXXXXXXXXXXX...XXXXX CS
  Coatomer_WDAD  37 slshnpngrfvlV.cgdgeyiiyt.....alalrnkaygkgldfvwvssnrfavles.sksvkifknf.kekktksikleyqvdkifg...GalLg 121
                    s+s++p+ + +l   gd + ++        la  +k     ++++w+  ++ a+  s  k+v++ +    e+    + +e qv+ +     G lL 
     CDO72559.1 847 SVSFSPTAKEFLSgSGDTTVKLWDvatatCLATWQKHSEAVSSVAWSLDGALAASGSvDKTVVLWHVTtGEEPLVLLGHEDQVNHVGFaaeGILLS 942
                    667777666665555555555554555655666667777777888999999888888888888875442666667888899999986669999999 PP

                    XXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
  Coatomer_WDAD 122 vksegsvsfYDweqgklvrridvkk.vknVvwsddgelva 160
                    ++++++  ++D  ++k +r ++ ++ v++V  s  gel+a
     CDO72559.1 943 ASDDKTCRVWDASSNKPIRVLRHSSsVQRVAASSGGELIA 982
                    9999999999999999999999886699999999999988 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0099
                     XXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD   37 slshnpngrfvlVcgdgeyiiyt...alalrnkaygkgldfvwvssnrfavles 87  
                      ls +p++r++lV   ++  +++    ++ r+ +   ++  +w+s ++f + + 
     CDO72559.1 1128 GLSLSPDRRLILVAYRHRLGLVNaltGQDTRDIKHSDAQRIAWSSAGDFFACTG 1181
                     58999********9999998888666889999999999*******999766554 PP

>> DUF5018  Domain of unknown function (DUF5018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.86   1.3e+03     178     202 ..     794     818 ..     789     819 .. 0.86
   2 ?    9.1   0.0   0.00031      0.47     259     313 ..    1175    1227 ..    1156    1247 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.86
     DUF5018 178 AtisPdPsvealdyeeevkltVtAh 202
                  t sP  +++ald++++ ++ V  h
  CDO72559.1 794 STPSPGGAITALDFSSDERYIVSGH 818
                 5889999*************99866 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00031
     DUF5018  259 klvlnegaeekvyl.nkatGekvGtidlgsvslsngavtsDeagnlllcnlaakga 313 
                    + ++g+++++yl +++tG+ + t+   s++ ++ + t+De+++++ +++   ++
  CDO72559.1 1175 DFFACTGQDDAIYLwETKTGRPIATLAGHSMDINALCFTGDEGQQIISASH---DG 1227
                  5788******99875899********9999****************98875...34 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.65   9.8e+02      78     126 ..      97     144 ..      73     175 .. 0.69
   2 ?    8.1   0.0    0.0022       3.3       3     117 ..     256     405 ..     254     415 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.65
                 CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSE CS
         AAA  78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdr 126
                 +s+ ++++v++L   + ++++  ++v+    t   d ++pal   R+d+
  CDO72559.1  97 KSSARTEAVKTLHGYIIWLNNMLENVLSADSTDMQDCVPPALQ-ARLDQ 144
                 4556666677777777777777676777666777777777777.44443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0022
                 EESSTTSSHHHHHHHHHHHH......THEEEEEETTTCSSS.....................................STTHHHHHHHHHHHHHHHTS. CS
         AAA   3 lyGppGtGKTllakavakel......gvefleisgsellsk.....................................yvgesekkirelfkeakeka. 57 
                 ++G  G GK++la+ va+ +      g++f+     +   +                                      v++ +k i e ++ ak+   
  CDO72559.1 256 IHGLAGFGKSTLAQTVAQWWdedkilGATFFCARDGDRS-DvrciyrtiayqlacrfpgfhdalldvlkadpdvsasfPVQQLKKLIVEPLSVAKARGg 353
                 799***************963332223443322222222.12345555555556666667777777777777777777788888888888888888778 PP

                 ..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTH CS
         AAA  58 ..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                   +  +++iD +d+ + +           +v+ +l+ l++  ++ +++ +++++  ++++++
  CDO72559.1 354 fpHRIVVVIDALDECTDEG----------AVSIILKSLSQHVSELQPLRFVITSRPEENISR 405
                 8555888888888887776..........777777777777777777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 9112.51
//
Query:       CDO72560.1  [L=1213]
Description: hypothetical protein BN946_scf184983.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-47  162.2   0.0    1.6e-47  161.5   0.0    1.3  1  DUF3337      Domain of unknown function (DUF3337)
    1.1e-23   83.1   3.6    2.9e-06   27.9   0.0    5.9  5  WD40         WD domain, G-beta repeat
    0.00057   18.9   0.0     0.0022   17.0   0.0    1.8  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0057   16.9   0.1       0.17   12.2   0.0    3.1  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.043   14.5   0.0      0.083   13.6   0.0    1.4  1  RAWUL        RAWUL domain RING finger- and  WD40-associated u
      0.052   12.2   0.1       0.92    8.1   0.0    2.6  3  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> DUF3337  Domain of unknown function (DUF3337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   5.4e-51   1.6e-47       1     172 []    1014    1194 ..    1014    1194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 5.4e-51
     DUF3337    1 lPkdtliiiseespesgnvrdlyrgtvgdlgedvdlleevlPsWllevllenkipikesvkisFvLlplpssklkedklpelekknsrLtanrmLrv 97  
                  lP++t+iiisee  + +++ +lyrg+++++g+d+++leev+P+Wlle+ll nk+p+  ++kisFvLlp+++ +   ++lpel +       +r+Lrv
  CDO72560.1 1014 LPPHTSIIISEE--APSGWVTLYRGSISSTGNDTRQLEEVMPMWLLECLLLNKVPTIPITKISFVLLPYKEPDG--ESLPELLN-------TRFLRV 1099
                  7***********..7788***************************************************66655..58999888.......8***** PP

     DUF3337   98 rKileyvaeklekktkeskass....................eeeekeeedkklkpeeklellCndqvlpptmtLatvktfiWkssgDlvlhYrl 172 
                  rK++++v++kle+ +    +++                     ++++e+++++ ++e+++e+lCnd+vlp +mtLa+v++f+W++s++lv+hYr+
  CDO72560.1 1100 RKLTNHVQDKLERIAAGLPSPIhpasnaptprssfdtrslasGRARSEHHEHRPRAEDQYEILCNDMVLPLDMTLAAVRQFVWRQSAELVMHYRR 1194
                  ************77666555449999**************9966667778889****************************************96 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0013       3.8      10      37 ..      95     123 ..      88     124 .. 0.84
   2 !   27.9   0.0   9.7e-10   2.9e-06       8      38 .]     141     172 ..     133     172 .. 0.89
   3 !   13.9   0.0   2.6e-05     0.077      11      38 .]     196     223 ..     182     223 .. 0.86
   4 !   20.6   0.0     2e-07   0.00059       3      38 .]     229     265 ..     227     265 .. 0.89
   5 !    7.5   0.4    0.0027       8.2       2      24 ..     270     292 ..     269     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
                 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriW 37 
                 H ++++++  + +++ l+s+s Dg+++ W
  CDO72560.1  95 HsDWINDMILCNYNQTLVSASSDGSIKAW 123
                 8555999999999999998877*****99 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 9.7e-10
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H + v++l ++++++w+asGs D+t++iWd
  CDO72560.1 141 GTHaDYVRCLTYCREQQWFASGSFDRTIKIWD 172
                 579666*************************9 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 2.6e-05
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                  s+++la++p+g+ +asGs  + +r+Wd
  CDO72560.1 196 ASIYALATDPYGSIIASGSPERVIRMWD 223
                 349************************9 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 2e-07
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  + +l GH ++++++  s d ++l++Gs D ++++W+
  CDO72560.1 229 RIAKLVGHtDNIRAILISEDAKYLLTGSADASIKLWS 265
                 567899**766*************************5 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0027
                 EEEEEEESS.SSEEEEEEETTSSE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw 24 
                 +cl+t+t H  sv+sl fs++ a+
  CDO72560.1 270 RCLHTFTHHtESVWSL-FSSHPAL 292
                 7********888****.6655555 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29   8.8e+02     185     219 ..      93     128 ..      85     134 .. 0.78
   2 !   17.0   0.0   7.3e-07    0.0022     222     288 ..     214     280 ..     206     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvyle 219
                 + hs  i + ++     +l  as+dG +k +  + +
  CDO72560.1  93 QMHSdWINDMILCNYNQTLVSASSDGSIKAWTPHSH 128
                 55665788888889999999*********9976655 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 7.3e-07
    Ge1_WD40 222 eeprCLheWkPhdGkslssll.fldnhkeesdeqfWrfaitgadnnselklWscelWtClqtikfaps 288
                 + +r +  W P  Gk ++ l+   dn++    ++  ++++tg+ +   +klWs ++ +Cl t   +++
  CDO72560.1 214 SPERVIRMWDPRSGKRIAKLVgHTDNIRAILISEDAKYLLTGSAD-ASIKLWSLSSQRCLHTFTHHTE 280
                 56799999***********99678999998777888******976.67**************876655 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.61   1.8e+03      39      70 ..     145     176 ..     139     182 .. 0.87
   2 ?    2.8   0.0     0.049   1.5e+02      33      81 ..     190     238 ..     150     244 .. 0.79
   3 !   12.2   0.0   5.7e-05      0.17      25      85 ..     226     283 ..     209     289 .. 0.88
   4 ?   -3.3   0.0       3.8   1.1e+04      39      79 ..     599     638 ..     594     643 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.61
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesg 70 
                    vr+L +  + + +a +  d ++++ d  ++
   CDO72560.1 145 DYVRCLTYCREQQWFASGSFDRTIKIWDLATA 176
                  56999*********************998775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.049
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  e+++++ ++ +La  p g+++a +  +  +r+ d  sgk + +l  +++
   CDO72560.1 190 EAAGPKASIYALATDPYGSIIASGSPERVIRMWDPRSGKRIAKLVGHTD 238
                  5667889999*****************************9998866555 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 5.7e-05
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +g+r+ +l   ++  ++r++  ++d k L  + +d +++l + +s++++h+++ ++e+ v 
   CDO72560.1 226 SGKRIAKL--VGHTDNIRAILISEDAKYLLTGSADASIKLWSLSSQRCLHTFTHHTES-VW 283
                  56777777..688899************************************999885.54 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 3.8
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  + vr+++ +   + L v +  gev + d+  g ++  ++ +
   CDO72560.1 599 GLVRCVMLNDRVHALTVDT-AGEVAVWDVVRGACLGRYPSE 638
                  5677777777777777755.589999999999888777665 PP

>> RAWUL  RAWUL domain RING finger- and  WD40-associated ubiquitin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-05     0.083      37      73 .]    1158    1193 ..    1143    1193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
                  EEE..TTSEEE--TTCBHHHHHHHTT-SSS-EEEEEE CS
       RAWUL   37 iveilyegeftLngsltLelvnekyWkrnkPLeLyYr 73  
                  + eil+++ + L+ ++tL  v ++ W++++ L ++Yr
  CDO72560.1 1158 QYEILCNDMV-LPLDMTLAAVRQFVWRQSAELVMHYR 1193
                  56899*****.*************************8 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.94   2.8e+03     216     245 ..      93     123 ..      81     124 .. 0.78
   2 ?    0.7   0.0     0.054   1.6e+02     229     252 ..     155     178 ..     142     205 .. 0.84
   3 ?    8.1   0.0   0.00031      0.92     223     259 ..     243     278 ..     216     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.94
                 ECEEEEET......TTTEEEEEETT-EEEEE CS
      Nup160 216 alsldvavavvei.gqtylfalsrdgkLrvW 245
                 +  +d +++++    +++l+++s+dg +++W
  CDO72560.1  93 QMHSDWINDMILCnYNQTLVSASSDGSIKAW 123
                 45666777777667889999999***99999 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.054
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                 +q+  ++ s d+++++W+l+t++ 
  CDO72560.1 155 EQQWFASGSFDRTIKIWDLATASA 178
                 5556666789***********875 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00031
                 T.....TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltgkclatidll 259
                 + ++e + +yl++ s d  +++W+l++++cl t++  
  CDO72560.1 243 ILISE-DAKYLLTGSADASIKLWSLSSQRCLHTFTHH 278
                 44566.99***********************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 7468.65
//
Query:       CDO72561.1  [L=79]
Description: hypothetical protein BN946_scf184983.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.046   13.8   0.2      0.086   12.9   0.2    1.5  1  Squash    Squash family serine protease inhibitor


Domain annotation for each model (and alignments):
>> Squash  Squash family serine protease inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   4.8e-06     0.086       6      22 ..      36      52 ..      34      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-06
                ---B-SSGGGSSTT-EE CS
      Squash  6 IlmeCkrDsDCladCvC 22
                I+ +C++D DC a+  C
  CDO72561.1 36 IFSNCTTDADCTAGETC 52
                8999********98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 576.42
//
Query:       CDO72562.1  [L=93]
Description: hypothetical protein BN946_scf184983.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   13.2   0.0       0.12   12.9   0.0    1.2  1  DX        DX module


Domain annotation for each model (and alignments):
>> DX  DX module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.4e-06      0.12      47      63 ..      44      60 ..      19      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.4e-06
          DX 47 ekkCssnrdCkegsvCv 63
                   C+s +dC+ g+vC 
  CDO72562.1 44 PDTCTSAADCTDGDVCF 60
                359*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 694.36
//
Query:       CDO72563.1  [L=128]
Description: hypothetical protein BN946_scf184983.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.061   13.8   0.0      0.091   13.2   0.0    1.2  1  DX        DX module


Domain annotation for each model (and alignments):
>> DX  DX module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.1e-06     0.091      44      62 ..      76      94 ..      53      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-06
          DX 44 kaeekkCssnrdCkegsvC 62
                ++   +C++++dC+ g+vC
  CDO72563.1 76 SQALLFCNTDADCGTGEVC 94
                223459************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 851.64
//
Query:       CDO72564.1  [L=694]
Description: hypothetical protein BN946_scf184983.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-09   36.7   0.2      4e-09   35.8   0.0    1.5  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.023   14.6   0.2       0.05   13.5   0.2    1.5  1  NACHT           NACHT domain
      0.044   13.0   0.0       0.12   11.6   0.0    1.7  2  KAP_NTPase      KAP family P-loop domain
       0.09   11.7   1.3       0.23   10.3   1.1    1.6  2  Phage_min_cap2  Phage minor capsid protein 2
       0.11   13.3   0.2       0.23   12.3   0.2    1.4  1  PRC2_HTH_1      Polycomb repressive complex 2 tri-helical dom


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.68   2.4e+03     256     261 ..      88      93 ..      29     141 .. 0.45
   2 !   35.8   0.0   1.1e-12     4e-09      35     117 ..     213     296 ..     174     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.68
  Pkinase_fungal 256 lkkses 261
                     ++++e 
      CDO72564.1  88 KEAEEE 93 
                     111111 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 1.1e-12
  Pkinase_fungal  35 eeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlgll.lmdddeLGlDpt 117
                     + k++  l+q+a+yar  ++a p   F + ++++g+++ + +fDR G+ +s   d+ ++p++firv+ +++ +++d+eLG Dp+
      CDO72564.1 213 KRKVSRILTQVANYARLHLSARPFSVFSVSIMIFGCDFCVAIFDRGGAQVSPIYDMFRNPDTFIRVIRSVTrVLSDAELGRDPS 296
                     345677899**********************************************************99873689*******96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.4e-05      0.05      61     132 ..     338     404 ..     302     426 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                 CCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT  61 qlpepaapvsevwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpral 132
                 ql+e++ ++ ++ +  +  p r+  ++D+lDe+ ++        + + Ls  i++  l+  ++++t+rp+  
  CDO72564.1 338 QLKELIVEPLKFAKAQQDFPSRIAVVIDALDECTDQEAV---STILKSLSLHISE--LTPLKFVITSRPEEN 404
                 445555555555556667899999**********96655...5556666556777..9999*******9876 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.2e-05      0.12     171     198 ..     356     384 ..     277     403 .. 0.77
   2 ?   -3.7   0.0       1.5   5.4e+03     179     205 ..     562     588 ..     562     589 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
  KAP_NTPase 171 lqkrlVvviDdLDrceteevlq.lleavk 198
                   +r+ vviD+LD c+++e+++ +l+ + 
  CDO72564.1 356 FPSRIAVVIDALDECTDQEAVStILKSLS 384
                 5689***********98777651555544 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.5
  KAP_NTPase 179 iDdLDrceteevlqlleavkllfslkp 205
                 iD+L r+ + ev+ +l a++++++++ 
  CDO72564.1 562 IDALLRLPSGEVRRILPALNAVVHMPA 588
                 89999*****************99876 PP

>> Phage_min_cap2  Phage minor capsid protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   6.3e-05      0.23      28     123 ..      37     133 ..      34     136 .. 0.84
   2 ?   -2.2   0.0      0.42   1.5e+03     135     154 ..     516     535 ..     512     547 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.3e-05
  Phage_min_cap2  28 iarrikktgeltntaewqieklaelgllnreilkliskltgksekelrkllkeagdkaiksddkelaiykeaglep..kplekseelqqlveayl 120
                     + rr+k  +  +++ ++  +kl+e g++ r+++ l +++ +  + ++ +l kea +++   dd el+  ++a++ p  k+ +++ ++++ +ea++
      CDO72564.1  37 VLRRLKIDTVSSDIVQLCQQKLKEGGAVYRQVKALQNMARRADRMTVAQLEKEAEEEQHDYDD-ELSDSEAAQATPnvKKSRRERNMYEPLEAIF 130
                     78*****999*********************98877777777777777777777666666666.*****99999998788999999999999998 PP

  Phage_min_cap2 121 kqt 123
                     + +
      CDO72564.1 131 DAI 133
                     876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.42
  Phage_min_cap2 135 altslekaYerildeavakv 154
                     al++l+  Y+++ld+a++k 
      CDO72564.1 516 ALRMLDTLYKQVLDRATEKL 535
                     66899999******999986 PP

>> PRC2_HTH_1  Polycomb repressive complex 2 tri-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.5e-05      0.23      18      82 ..      68     136 ..      64     149 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.5e-05
  PRC2_HTH_1  18 vnaLmqyeekeeeseseskekksek...kkkkk.kaeedeekeekikkekskekkkfpadiiFqaIssv 82 
                 v+aL ++ ++ ++ +  + ek++e+   + +++ + +e+++ + ++kk++ + +   p ++iF+aIssv
  CDO72564.1  68 VKALQNMARRADRMTVAQLEKEAEEeqhDYDDElSDSEAAQATPNVKKSRRERNMYEPLEAIFDAISSV 136
                 667777666666544444444433311122222023334444567777777888889**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4612.41
//
Query:       CDO72565.1  [L=702]
Description: hypothetical protein BN946_scf184983.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-51  175.6   0.0    2.1e-28   99.2   0.0    2.4  2  Pkinase_fungal  Fungal protein kinase
     0.0092   15.9   0.0      0.017   15.0   0.0    1.4  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.031   13.6   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   1.3e-24     8e-21      35     210 ..     190     373 ..     151     391 .. 0.82
   2 !   99.2   0.0   3.5e-32   2.1e-28     281     407 ..     397     560 ..     377     561 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.3e-24
  Pkinase_fungal  35 eeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlgll.lmdddeLGlDptiv.....tesd 123
                     + k++  l+q+a+yar  ++a p   F + ++++g+++ + +fDR G+ +s   d+ ++p++firv+ +++ +++d+eLG Dp+++      +s 
      CDO72565.1 190 KRKVSRILTQVANYARLHLSARPFSVFSVSIMIFGCDFCVAIFDRGGAQVSPIYDMFRNPDTFIRVIRSVTrVLSDAELGRDPSVSlapssDRSP 284
                     345677899**********************************************************99873689**********9998743378 PP

  Pkinase_fungal 124 grrsyeikaeeeketekleleeplarqraivgRgTtcwrarkeger...gkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahed 210
                     g++  +++a ++++ +  +   ++ ++ ++ gR+ ++w +r+ +++   g ++++K +Wr+++r+sE  + +++ + +  g+a+++   d
      CDO72565.1 285 GGPVWIVGAVGSDKRRWCTTGPIIWSSLSLFGRASAVWPVRELKDNklvGGDMILKSTWRSSDRDSESFVYQNI-KGSHPGLAKFIVGGD 373
                     8888888777666655555558888889**************99999**99***********************.778889998876555 PP

  == domain 2  score: 99.2 bits;  conditional E-value: 3.5e-32
  Pkinase_fungal 281 rlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgare.. 373
                     + +++v +rl+i++vGkp++ +++ +elle+l+ a+k+hr L  +++iLHrD+S++N+l+  + ++++  g+L DL++a   +  ++++++    
      CDO72565.1 397 E-RTKVWHRLLIESVGKPVWAYQTDRELLEGLIGALKAHRFLS-EQNILHRDVSAGNVLLALDPEQQGTAGFLTDLEYARMGAVITRTRQETVea 489
                     3.599**************************************.*****************889999************9888766666543356 PP

  Pkinase_fungal 374 ..............................rtGTleFmaievlk....gee...HsyrhDLESffyvllwi 407
                                                     GTl+Fm+ ++l     g++    ++++D+ESf++vll+ 
      CDO72565.1 490 ptaygpvradlrepmqrthttfvttqrgagISGTLQFMSRRLLAalmsGQQsvtTTVQDDVESFLWVLLYA 560
                     778889999999999999999999999999************99555522267799*************96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.9e-06     0.017     120     200 ..     398     477 ..     383     499 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-06
                 CHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE-.--TT-EEEE CS
         APH 120 aqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGvi.Dfedaglgp 200
                 ++ +++  ++es   +++  +++ ++e le  ++ al+a++   +++ +lH+D + gN+l+   p+++   G++ D+e+a++g 
  CDO72565.1 398 RTKVWHRLLIESV--GKPVWAYQTDRELLEG-LIGALKAHRF-LSEQNILHRDVSAGNVLLAldPEQQGTAGFLtDLEYARMGA 477
                 5555555555555..5666666665555555.9********9.59*****************9977777778877999999995 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.2e-06     0.031     111     137 ..     429     455 ..     416     463 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-06
                  HHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr 111 qvAkGmeyLeskklvHrdlaarNvLls 137
                     k+ ++L++++++Hrd++a NvLl+
   CDO72565.1 429 GALKAHRFLSEQNILHRDVSAGNVLLA 455
                  5567889******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4961.92
//
Query:       CDO72566.1  [L=287]
Description: hypothetical protein BN946_scf184983.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-27   95.0   8.0    8.7e-14   51.2   3.2    3.0  3  Sugar_tr  Sugar (and other) transporter
     0.0037   16.2   6.9       0.56    9.1   5.0    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   5.6e-13     5e-09     105     143 ..      36      74 ..      21      76 .. 0.91
   2 !    9.6   0.0     4e-05      0.36     185     216 ..     115     146 ..     112     165 .. 0.83
   3 !   51.2   3.2   9.7e-18   8.7e-14     274     379 ..     171     283 ..     164     287 .] 0.86

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5.6e-13
                 GGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr 105 livgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                  i gR+l+ igvG+as+++P+yi+E++p++lRg++v+l+
  CDO72566.1  36 HIGGRFLIFIGVGIASCIAPVYIQELSPTRLRGRMVVLN 74 
                 5778********************************997 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 4e-05
                 HHHGGGS---HHHHHHTT-HHHHHHHHHHHHH CS
    Sugar_tr 185 lilllflPESPrylvekgkeeeakevlaklrg 216
                  ++ lflPESPr  + +++ ++a++++ak+  
  CDO72566.1 115 YLFPLFLPESPRIIIVRQNFKAARKTMAKIYA 146
                 67889***********************9654 PP

  == domain 3  score: 51.2 bits;  conditional E-value: 9.7e-18
                 HHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHH.......HHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHH CS
    Sugar_tr 274 myysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllG.......aagmaicfvilg.ivalllvakskaasivaivfialfialfa 364
                   +s t+f++ g++++ +v +iv+ +n+++t+va+  +d ++RR++l+++       ++ +++ f+++  +    +++ s+ +s +++v+++l++a fa
  CDO72566.1 171 STLSATLFKESGFDQPTAVDLIVSGTNVISTLVALNYIDIISRRRILIFSvpsvivgLVLASVSFHFMMrGQLVDGTHYSTTWSALVLVGMILYVASFA 269
                 56799*******************************************997776666777777777777666666666669****************** PP

                 TTTTHHHHHHHHHHS CS
    Sugar_tr 365 lgwgpvpwvlvsElf 379
                 +g+g v+w    Elf
  CDO72566.1 270 TGLGNVLWQQ-GELF 283
                 ********87.7776 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00028       2.5     306     340 ..      39      73 ..      24      76 .. 0.82
   2 !    9.1   5.0   6.3e-05      0.56      40     312 ..     192     261 ..     165     278 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00028
       MFS_1 306 vlvliGfglgfvfpsllalasdlappeeagtasgl 340
                 + +li +g+g++++++ +++++l p++ +g+++ l
  CDO72566.1  39 GRFLIFIGVGIASCIAPVYIQELSPTRLRGRMVVL 73 
                 556777899999******************99876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 6.3e-05
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgp 138
                 +++ + ++++l++   +d ++rrr+l++++ + ++g                                                               
  CDO72566.1 192 IVSGTNVISTLVALNYIDIISRRRILIFSVPSVIVG--------------------------------------------------------------- 227
                 344445555666655566666666666666666666............................................................... PP

       MFS_1 139 llggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqev 237
                                                                                                                    
  CDO72566.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

       MFS_1 238 lglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.........ssavllllvlvliGf 312
                                                                   +++  +  ++         ++++ ++ +lvl+G+
  CDO72566.1 228 --------------------------------------------------LVLASVSFHFmmrgqlvdgTHYSTTWSALVLVGM 261
                 ..................................................4444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2132.76
//
Query:       CDO72567.1  [L=230]
Description: hypothetical protein BN946_scf184983.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-75  253.3   0.0    2.7e-75  253.1   0.0    1.0  1  LamB_YcsF  LamB/YcsF family


Domain annotation for each model (and alignments):
>> LamB_YcsF  LamB/YcsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.0   1.5e-79   2.7e-75      16     238 ..       1     222 [.       1     223 [. 0.95

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 1.5e-79
                 -S-HHHHCCC-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT----EE---HHHHH CS
   LamB_YcsF  16 lgdDeallplvtsaNiACGfHaGdpevmrktvelakekgVaiGAhpgypDlegFGRremelspeelealvlyQigaLkafakaegvklshvkpHGaLyn 114
                 +gdDeal+++++ aN+ACGfHa+d ++m++tv+lak+++V +GAhp++pD++gFGRrem+++p el+++++yQ+gaL +f+ a++vkl+h+kpHGa+y 
  CDO72567.1   1 MGDDEALMKTIHLANVACGFHASDFSIMNETVRLAKANNVLVGAHPSLPDRQGFGRREMKMEPGELASCFIYQVGALLGFLVAHDVKLNHIKPHGAVYG 99 
                 89************************************************************************************************* PP

                 HHHH-HHHHHHHHHHHHHH-TT.TEEEETTSHHHHHHHHCT--EEEEEETTB-B-TTSSB--TTSTTSB---HHHHHHHHHHHHHTSEEEBTTSSEEE- CS
   LamB_YcsF 115 qaakdeelaeavveavkaldpelillglagseleeaaeeaglkvvaevfaDraYeadgslvprsqpgaviedpeevaervlklveegkvtavdgeevel 213
                 ++a+d++la+a+v ++k++  +++++glag+++++aaee g++++ae+faD +Y+++g+l+ +++++ v    + v +rv++l+ee+k+t+v+g +++l
  CDO72567.1 100 MTARDPALARAAVGVAKTF--GVPFMGLAGTHHQKAAEELGVPFIAEWFADLDYSPEGNLLITKKHDPV--PLSVVQDRVKRLLEEQKITTVSG-QLPL 193
                 *******************..8****************************************9999765..567899*****************.6777 PP

                 --S....EEEE-SSSHHHHHCHCCCCHHH CS
   LamB_YcsF 214 kad....sicvHgDtpeavelaravreal 238
                  a     sic+H+Dtp+ave+ ++v++ +
  CDO72567.1 194 PAGvtevSICCHSDTPGAVEITKTVKALV 222
                 6655577*****************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1707.35
//
Query:       CDO72568.1  [L=788]
Description: hypothetical protein BN946_scf184983.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-52  176.5   0.0    6.6e-29  100.9   0.0    2.8  3  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.013   15.5   0.7      0.022   14.7   0.0    1.7  2  APH             Phosphotransferase enzyme family
      0.019   14.2   0.0      0.034   13.4   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
       0.04   14.7   0.6      0.092   13.6   0.6    1.5  1  PRC2_HTH_1      Polycomb repressive complex 2 tri-helical dom


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4     0.084   3.8e+02     216     282 ..     115     192 ..      89     219 .. 0.60
   2 !   71.8   0.0   9.9e-24   4.4e-20      36     211 ..     277     460 ..     249     478 .. 0.84
   3 !  100.9   0.0   1.5e-32   6.6e-29     281     407 ..     483     646 ..     463     647 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.084
  Pkinase_fungal 216 ddiaeiRkgldvtkaekfrskrkvvsssssqe...lsskaevklkksesskkvekrsvdssv..stskrsr........l 282
                     d ++  R++l+   a  + ++ k++++  +++   + ++ e + ++++++++  +rsv++    ++skr+r        +
      CDO72568.1 115 DVVQLCREKLEEGGA--VYRQVKALQDLARRAdgkTVEQLEREAEEEQAEDDEGARSVQAAAkvKKSKRERamykplevI 192
                     444666777766666..222333333333333444556666666666777777777777666557777777444444440 PP

  == domain 2  score: 71.8 bits;  conditional E-value: 9.9e-24
  Pkinase_fungal  36 eklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlgll.lmdddeLGlDptiv.....tesdg 124
                      k++  l+q+a+yar  ++a p   F + ++++g+++ + +fDR G+ +s   ++ ++p++firv+ +++ ++ d+eLG Dp+++      +s g
      CDO72568.1 277 RKVSRILTQVANYARLHLSARPFSVFSVSIMIFGCDFCVAIFDRGGAQVSPISNMFSNPDTFIRVIRSVTrVLGDAELGRDPSVSlapssDTSPG 371
                     45677899**********************************************************998736899*********99998533788 PP

  Pkinase_fungal 125 rrsyeikaeeeketekleleeplarqraivgRgTtcwrarkeger...gkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahedv 211
                     ++  +++a +++e    +   ++ ++ ++ gR+T +w +r+ +++   g ++++K +Wr+++r++E  + +++ + +  g+a+++   d 
      CDO72568.1 372 GPVWIVGAVGSDERLWCTTGPVIWSSLSLFGRATGVWPVRELKNNklvGRDMILKSTWRSSDRDPESFVYQNI-KGSHPGLAKFIVGGDA 460
                     888888777666655555557788888***************9999**99***********************.7788999998776665 PP

  == domain 3  score: 100.9 bits;  conditional E-value: 1.5e-32
  Pkinase_fungal 281 rlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgare.. 373
                     + +++v++rl+i++vGkp++++++ +elle+l+ a+k+hr L  +++iLHrD+S++N+l+  + ++++  g+L DL++a   +   +++++    
      CDO72568.1 483 E-RTKVLHRLLIESVGKPVWEYQTDRELLEGLIGALKAHRFLS-EQNILHRDVSAGNVLLALDPEQQGTAGFLTDLEYARMGAVIPRTRQETVea 575
                     3.599**************************************.*****************889999************9877666666543356 PP

  Pkinase_fungal 374 ..............................rtGTleFmaievlk....gee...HsyrhDLESffyvllwi 407
                                                     GTl+Fm+ ++l     g++    ++++D+ESf++vll+ 
      CDO72568.1 576 ptaygpvradlrepmqrthttfvatqrgagISGTLQFMSRRLLAalmsGQQsvtTTVQDDVESFLWVLLYA 646
                     778888899999999999999999999999************99555522267799*************96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       1.1     5e+03      97     116 ..     129     148 ..     108     184 .. 0.48
   2 ?   14.7   0.0     5e-06     0.022     135     200 ..     497     563 ..     469     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
                 HHHHHHCCHHCH.-STTTB- CS
         APH  97 algeflaalhqvdpaalpla 116
                 a+ +  +al++++ +a++ +
  CDO72568.1 129 AVYRQVKALQDLARRADGKT 148
                 44444444444422222211 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5e-06
                 CCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE-.--TT-EEEE CS
         APH 135 rllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGvi.Dfedaglgp 200
                 +++  e++ ++e le  ++ al+a++   +++ +lH+D + gN+l+   p+++   G++ D+e+a++g 
  CDO72568.1 497 GKPVWEYQTDRELLEG-LIGALKAHRF-LSEQNILHRDVSAGNVLLAldPEQQGTAGFLtDLEYARMGA 563
                 5555666665555555.9*********.59*****************9977777778877999999994 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.5e-06     0.034     109     137 ..     513     541 ..     498     548 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.5e-06
                  HHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr 109 alqvAkGmeyLeskklvHrdlaarNvLls 137
                   +   k+ ++L++++++Hrd++a NvLl+
   CDO72568.1 513 LIGALKAHRFLSEQNILHRDVSAGNVLLA 541
                  555667889******************97 PP

>> PRC2_HTH_1  Polycomb repressive complex 2 tri-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   2.1e-05     0.092      18      82 ..     134     199 ..     130     212 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
  PRC2_HTH_1  18 vnaLmqyeekeeeseseskekksekkkk.kkkaeedeekeekikkekskekkkfpadiiFqaIssv 82 
                 v+aL    ++ + ++ e+ e ++e+++  + +  ++ +  +k+kk+k + +   p ++iF+aIssv
  CDO72568.1 134 VKALQDLARRADGKTVEQLEREAEEEQAeDDEGARSVQAAAKVKKSKRERAMYKPLEVIFDAISSV 199
                 556666665555555444444433332202222223345578888888889999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5490.36
//
Query:       CDO72569.1  [L=100]
Description: hypothetical protein BN946_scf184983.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   38.2   0.0    1.4e-09   38.0   0.0    1.0  1  LamB_YcsF  LamB/YcsF family


Domain annotation for each model (and alignments):
>> LamB_YcsF  LamB/YcsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   7.9e-14   1.4e-09     159     237 ..      12      91 ..       2      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 7.9e-14
                 EEEEETTB-B-TTSSB--TTSTTSB---HHHHHHHHHHHHHTSEEEBTTSSEEE---S....EEEE-SSSHHHHHCHCCCCHH CS
   LamB_YcsF 159 vaevfaDraYeadgslvprsqpgaviedpeevaervlklveegkvtavdgeevelkad....sicvHgDtpeavelaravrea 237
                  +e+faD +Y+++g+l+ +++++ v      v ++v++l+ee+k+t+v+g +++l a     sic+H+D ++ v++ ++v++ 
  CDO72569.1  12 STEWFADLDYSPEGNLLITKKHDPV--PLCVVQDKVKRLLEEQKITTVSG-QLPLPAGvtelSICCHSDIQGTVKIEKTVKAF 91 
                 589***************9999765..5678999****************.67776656677***************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 714.31
//
Query:       CDO72570.1  [L=809]
Description: hypothetical protein BN946_scf184983.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-51  173.7   0.0    3.8e-29  101.7   0.0    2.4  3  Pkinase_fungal  Fungal protein kinase
     0.0084   16.1   0.3      0.027   14.4   0.0    1.8  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.02   14.2   0.0      0.034   13.4   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.4      0.83     5e+03     247     255 ..     158     167 ..     104     205 .. 0.42
   2 !   69.5   0.0   3.8e-23   2.3e-19      36     207 ..     294     474 ..     254     486 .. 0.85
   3 !  101.7   0.0   6.4e-33   3.8e-29     280     407 ..     503     667 ..     483     668 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 0.83
  Pkinase_fungal 247 e.....lsskaevk 255
                     +          + +
      CDO72570.1 158 AdrmtvA----QLE 167
                     1211110....111 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 3.8e-23
  Pkinase_fungal  36 eklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlgll.lmdddeLGlDptiv......tesd 123
                      +++  l+q+a+ya   ++a p   F + ++++g+++ + +fDR G+ +s   d+  ++++firv+ +++ ++ d+eLG Dp+++       +s 
      CDO72570.1 294 REVSRILTQVANYASLHLSARPFSVFSVSIMIFGCDFCVAIFDRGGAQVSPIYDMFCNSDTFIRVIRSVTrVLGDAELGRDPSVSlapvplSSSS 388
                     35667799**********************************************************998736899**************954499 PP

  Pkinase_fungal 124 grrsyeikaeeeketekleleeplarqraivgRgTtcwrarkeger...gkeyvvKdsWrdaerksEaelLkkaeergvegvarlva 207
                     g++  +++a ++++ +  +    + ++ ++ gR+T++w +r+ +++   g ++++K +Wr+++r++E  + +++ + +  g+a+++ 
      CDO72570.1 389 GGPAWIVDAVGSDKRRWCTTGPAIWSSLSLFGRATAVWPVREIKDNklvGGDMILKSTWRSSDRDPESFVYQNI-NGSHPGLAKFIT 474
                     9999***8777777666666699*******************988889*99*******************9999.667788888765 PP

  == domain 3  score: 101.7 bits;  conditional E-value: 6.4e-33
  Pkinase_fungal 280 srlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgare. 373
                      + +++v++rl+i++vGkp++++++ +elle+l+ a+k+hr L  +++iLHrD+S++N+l+  + ++++  g+L DL++a   +  ++++++   
      CDO72570.1 503 GE-RTKVLHRLLIESVGKPVWEYQTDRELLEGLIGALKAHRFLS-EQNILHRDVSAGNVLLALDPEQQGTAGFLTDLEYARMGAVITRTRQETVe 595
                     33.59***************************************.*****************889999************988876666654335 PP

  Pkinase_fungal 374 ...............................rtGTleFmaievlk....gee...HsyrhDLESffyvllwi 407
                                                      GTl+Fm+ ++l     g++    ++++D+ESf++vll+ 
      CDO72570.1 596 aptaygpvradlrepmqrthttfvvtqrgagISGTLQFMSRRLLAalmsGQQsvtTTVQDDVESFLWVLLYA 667
                     6778889999999999999999999999999************99555522267799*************96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.38   2.3e+03      85     138 ..     131     179 ..     116     202 .. 0.58
   2 !   14.4   0.0   4.5e-06     0.027     137     200 ..     520     584 ..     490     605 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCG CS
         APH  85 klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarlla 138
                  + ++q+ e ++a+ +  +al+++   a++ ++++  +le ++ +e+   ++++
  CDO72570.1 131 VQLCQQKLEEGGAVYRQVKALQNM---ARRADRMTVAQLEREAEEEQH--DYDD 179
                 566778888888888888888888...444444443333333333333..3333 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.5e-06
                 CGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE-.--TT-EEEE CS
         APH 137 laselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGvi.Dfedaglgp 200
                 +  e++ ++e le  ++ al+a++   +++ +lH+D + gN+l+   p+++   G++ D+e+a++g 
  CDO72570.1 520 PVWEYQTDRELLEG-LIGALKAHRF-LSEQNILHRDVSAGNVLLAldPEQQGTAGFLtDLEYARMGA 584
                 55555665555555.999******9.599****************9977777778877999999995 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-06     0.034     109     137 ..     534     562 ..     519     570 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-06
                  HHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr 109 alqvAkGmeyLeskklvHrdlaarNvLls 137
                   +   k+ ++L++++++Hrd++a NvLl+
   CDO72570.1 534 LIGALKAHRFLSEQNILHRDVSAGNVLLA 562
                  555667889******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 5218.94
//
Query:       CDO72571.1  [L=190]
Description: hypothetical protein BN946_scf184983.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-06   24.8   1.3     0.0016   17.4   0.0    2.0  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.19   11.3   1.0        0.3   10.7   0.1    1.7  2  TMEM100   Transmembrane protein 100


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.3   0.00035       3.2     301     345 ..      39      82 ..      38      89 .. 0.83
   2 !   17.4   0.0   1.7e-07    0.0016     376     430 ..      90     144 ..      86     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS CS
    Sugar_tr 301 fvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks 345
                 +++t+va+  +d + R ++l++++  m++ +v+ + va+ +++ +
  CDO72571.1  39 IIFTLVALNYIDIINRSRILIFSVPSMIVGLVLAS-VAFHFTTHK 82 
                 689*****************************999.555555443 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.7e-07
                 HHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHH CS
    Sugar_tr 376 sElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfi 430
                  Elf +++R+++ ++a+++   +n+l+  ++  +++ i  ++   ++agl++l++
  CDO72571.1  90 GELFALEFRDIGVSLATTTERACNLLTRATYLSLMDCIMRAGACGFYAGLCLLGY 144
                 59*************************************99999999*9999986 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.3e-05       0.3      58      83 ..      58      83 ..      54      92 .. 0.89
   2 ?   -2.8   0.1      0.48   4.3e+03      48      69 ..     118     139 ..     101     149 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.3e-05
     TMEM100 58 iPfgvvvLvaGvvvtavaytfnshgs 83
                + f+v ++++G+v ++va+ f +h+ 
  CDO72571.1 58 LIFSVPSMIVGLVLASVAFHFTTHKT 83
                569999*****************975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.48
     TMEM100  48 GaekscYrCviPfgvvvLvaGv 69 
                  + +s   C++  g+  + aG+
  CDO72571.1 118 ATYLSLMDCIMRAGACGFYAGL 139
                 4455555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1335.59
//
Query:       CDO72572.1  [L=481]
Description: hypothetical protein BN946_scf184983.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-20   74.2   0.0    2.6e-20   73.0   0.0    1.6  1  FAD_binding_3   FAD binding domain
    7.5e-07   29.3   1.1    1.9e-06   28.0   1.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.1e-06   27.8   1.2     0.0013   17.7   1.2    2.4  2  Trp_halogenase  Tryptophan halogenase
    2.2e-06   27.1   0.3    6.2e-06   25.7   0.3    1.6  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00024   20.3   1.9       0.15   11.0   0.0    2.1  2  Lycopene_cycl   Lycopene cyclase protein
     0.0013   17.9   3.5     0.0021   17.2   3.5    1.3  1  FAD_binding_2   FAD binding domain
     0.0014   18.2   1.8     0.0031   17.1   1.8    1.6  1  DAO             FAD dependent oxidoreductase
     0.0043   16.3   0.4     0.0084   15.4   0.4    1.4  1  Thi4            Thi4 family
     0.0057   16.0   1.0      0.017   14.4   0.5    1.9  2  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0075   15.4   0.0       0.01   14.9   0.0    1.2  1  SE              Squalene epoxidase
     0.0088   15.4   0.8      0.012   15.0   0.8    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.011   14.5   2.0      0.022   13.5   2.0    1.4  2  HI0933_like     HI0933-like protein
      0.011   16.3   0.5      0.031   14.8   0.3    1.9  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.069   12.2   3.3       0.11   11.6   3.3    1.2  1  GIDA            Glucose inhibited division protein A
        0.1   11.9   0.6       0.18   11.1   0.6    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.39   10.4   1.5       0.67    9.6   1.5    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   2.3e-23   2.6e-20       2     345 ..      35     382 ..      34     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.3e-23
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC..CEEEEEHHCHHC CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt..pkaradleless 95 
                      Vl+VG G  Gl +a+ L +aG +v+l e  +   + + +  +++   +llr  G+ ++++a +++ e +    yn+ +++    +  d+e e+ 
     CDO72572.1  35 LHVLVVGCGMGGLAAAHCLGQAGHKVTLFESAAAIGEVGAGIQVTPNVSRLLRRWGVGEKLEAVAVRPEAIVLRKYNT-GERvaYTRWSDME-EQY 128
                    57*******************************9999999999***********************************.4445778888899.888 PP

                    ST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHH.HTGGEEEEEEEEEEEEEE CS
  FAD_binding_3  96 pervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrkt.lgiefegeetvyeagvld 189
                    +  ++ +   +l ++L +   +++ +++r k  v+s+    e   + v+   +ge   v+ + +vGaDG++S + +  lg + ++e  + +a    
     CDO72572.1 129 GAPYYHIHRADLHKLLFDL--AAPfMTLRLKSTVVSVDP--EA--PSVTLA-SGE--VVHGDLIVGADGVKSMIQRVvLGHTNPAEP-TGDAVYRA 214
                    888889999*********9..556578888888885533..33..333333.344..5**************986651555544433.33344444 PP

                    EEEEC.-SCCCTTCCEEEEECCTTEE.......EEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHH.HHTTSSCEEEEEEEEEEEEEE CS
  FAD_binding_3 190 vlfda.dlsdiveplvlilsaesrgv.......mviPlen.tlerfyvqvearaekeersekfteeevkarlre.ivgektldveieevsawtvaq 275
                    +++++  l+d+  +  ++ ++e +g        m    +  ++ ++++  + + ++e+++ + + ++++a+    +  + +l   ++++ +w++ +
     CDO72572.1 215 IIPTDyLLKDPELK-PFVDHPEMTGWmgpgrhiMAYNIRAkKEFNIVLAHPDDGSVESWTAEGSADKMRADFADfEPRIRKLLGFVKSTLKWRLMD 309
                    44444344433322.444444444445555522333333312222333333333444555555444444443221223344444455555555444 PP

                    EE.ESSSEET..TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHH CS
  FAD_binding_3 276 rv.aekyrkg..rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqav 345
                    r   +k+ +   +v l GDA+H + P  +qG  +ai+Da  L+  L      +  + lL++Ye+ r+++ +++
     CDO72572.1 310 RQpLKKWIHSsyKVILLGDACHPMLPYRAQGAAMAIEDAAVLGNLLSRLNDPSQLKPLLQAYEDLRLPRTAET 382
                    3324555444479***********************************9999999************998776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.1   1.7e-09   1.9e-06       1      32 [.      39      70 ..      39      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.7e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   +vG G++Gl+aA+ L +ag++v+l+e++  +G
     CDO72572.1 39 VVGCGMGGLAAAHCLGQAGHKVTLFESAAAIG 70
                   8***************************9999 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.2   1.1e-06    0.0013       2      67 ..      37      98 ..      36     128 .. 0.90
   2 !    7.7   0.0    0.0012       1.4     148     218 ..     132     198 ..     106     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S.SS---SS-EE--THHHHTHHHHT--HHHHCHHC CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvese.eigtvgvGeatipsirkllrlLgideeeflret 67
                    +++vG G  G  aA  l++a+   ++vtl es+ +ig vg G   +p++  llr+ g+ e+  l+++
      CDO72572.1 37 VLVVGCGMGGLAAAHCLGQAG---HKVTLFESAaAIGEVGAGIQVTPNVSRLLRRWGVGEK--LEAV 98
                    89*******************...99*****9637***********************998..5555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
                     EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT CS
  Trp_halogenase 148 AyhldaalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaL 218
                      yh+ +a + k+L + a      r++ +vv+v+ ++     s++l++g++v +dl++ + G ++++   +L
      CDO72572.1 132 YYHIHRADLHKLLFDLAAPFMTLRLKSTVVSVDPEA----PSVTLASGEVVHGDLIVGADGVKSMIQRVVL 198
                     499999999999999999988888888887776554....789*********************9887776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.3   5.5e-09   6.2e-06       2     103 ..      36     183 ..      35     199 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.5e-09
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE..........TTHCHHHCSHHHHCHHHHHHHHHHHHH................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve..........legtclnggcllskallgvaedaeias................................ 57 
                  +v+v+G G++Glaaa+ l+qag+kvtl+e                 +++ +s  l++++  ++ ++                                
   CDO72572.1  36 HVLVVGCGMGGLAAAHCLGQAGHKVTLFEsaaaigevgaG----IQVTPNVSRLLRRWGVGEKLEAvavrpeaivlrkyntgervaytrwsdmeeqyg 129
                  699*************************877665533331....222222233333222222222244555666688888888888888888888888 PP

                  ............HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEE CS
                  ............xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ............evvkklnqg.ielllgeevvkidpgkkkvklekkkegdeekiaydkl 103
                              + +  l +  ++l+l+++vv++dp++  v+l      ++e +  d +
   CDO72572.1 130 apyyhihradlhKLLFDLAAPfMTLRLKSTVVSVDPEAPSVTL-----ASGEVVHGDLI 183
                  8888888888886667777776777788778888888888888.....33444444544 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   1.9    0.0022       2.5       2      34 ..      37      67 ..      36      74 .. 0.91
   2 !   11.0   0.0   0.00014      0.15      75     144 ..     126     192 ..     111     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasp 34
                   v+v+G+G  gl+ A+ l   ++g kv+l e+++
     CDO72572.1 37 VLVVGCGMGGLAAAHCL--GQAGHKVTLFESAA 67
                   89***************..999*****999876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00014
  Lycopene_cycl  75 illgraYgrvsskrlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglasl 144
                     + g +Y  +++++l++ l    +     +l+++v sv +e     +v+l+ g+ +++ l+v a g+ s 
     CDO72572.1 126 EQYGAPYYHIHRADLHKLLFDLAAPFMTLRLKSTVVSVDPEAP---SVTLASGEVVHGDLIVGADGVKSM 192
                    345569**********9999888899999*********99988...9*******************7654 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   3.5   1.9e-06    0.0021       2      33 ..      37      68 ..      36      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   v+V+G G++GLaAA+ + +aG+kv++ e + +
     CDO72572.1 37 VLVVGCGMGGLAAAHCLGQAGHKVTLFESAAA 68
                   9*************************998765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.8   2.8e-06    0.0031       1      34 [.      36      71 ..      36     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.8e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags 34
                +v+++G G+ Gl++A+ L ++g  Vtl+e++  +g+
  CDO72572.1 36 HVLVVGCGMGGLAAAHCLGQAGhkVTLFESAAAIGE 71
                79****************999999******977774 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   7.5e-06    0.0084      19      54 ..      36      70 ..      30      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.5e-06
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspG 54
                 v++vG G  GL+aa+ l+++ + kv+++e+  ++G
  CDO72572.1 36 HVLVVGCGMGGLAAAHCLGQA-GHKVTLFESAAAIG 70
                699******************.*********99998 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.5   1.5e-05     0.017       1      27 [.      44      70 ..      44      70 .. 0.91
   2 ?   -1.0   0.0      0.74   8.3e+02     225     257 ..     154     184 ..     137     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                   HHHHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvG 27
                   + GLaaA++L +aG++Vt++E+   +G
     CDO72572.1 44 MGGLAAAHCLGQAGHKVTLFESAAAIG 70
                   78*******************977666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.74
                    EETSEEEEEEEEETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 225 irlntrVkeikregdgvtvtledgevveaDaVv 257
                    +rl + V +++   +  +vtl +gevv++D +v
     CDO72572.1 154 LRLKSTVVSVDP--EAPSVTLASGEVVHGDLIV 184
                    778888888887..556666679*******987 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.2e-06      0.01     112     187 ..     303     378 ..     243     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.2e-06
          SE 112 gklrsmpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkR 187
                  k r m  + l+   +++  +illGDa     P  + G ++a++D+++l +ll+ l+d s+ + +l++ ++  + R
  CDO72572.1 303 LKWRLMDRQPLKKWIHSSYKVILLGDACHPMLPYRAQGAAMAIEDAAVLGNLLSRLNDPSQLKPLLQAYEDLRLPR 378
                 3889999999999999999**********99***********************9988877777777666665555 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.8   1.1e-05     0.012       2      35 ..      37      70 ..      36     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlG 35
                  v+VvG g++G+aAA    +aG kv L e    +G
    CDO72572.1 37 VLVVGCGMGGLAAAHCLGQAGHKVTLFESAAAIG 70
                  9***************************998888 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.0     2e-05     0.022       2      37 ..      36      71 ..      35      73 .. 0.95
   2 ?   -3.6   0.0       3.1   3.5e+03     124     167 ..     152     192 ..     143     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +v+v+G G  Gl aA  ++++g++V+l+e+a ++g+
   CDO72572.1 36 HVLVVGCGMGGLAAAHCLGQAGHKVTLFESAAAIGE 71
                 699****************************99985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.1
                  -EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 124 vklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  ++lrl+++v sv+ e+    +v++ s+e ++ d +v A G +S+
   CDO72572.1 152 MTLRLKSTVVSVDPEA---PSVTLASGEVVHGDLIVGADGVKSM 192
                  5778888888884444...4577777999999999999999987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   2.8e-05     0.031       1      55 [.      36      91 ..      36     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngi 55
                +v+vvG G  gl +A  l + g+kVt++e +  +   + + ++  ++ + l++ g+
  CDO72572.1 36 HVLVVGCGMGGLAAAHCLGQAGHKVTLFESAAAIGeVGAGIQVTPNVSRLLRRWGV 91
                79*****************************9999878888888777777777666 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.3   9.5e-05      0.11       2      37 ..      37      71 ..      36      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.5e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37
                v V+G G+ G++AA  + ++G+kv+L+ ++   i+e
  CDO72572.1 37 VLVVGCGMGGLAAAHCLGQAGHKVTLF-ESAAAIGE 71
                89************************9.44455544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   0.00016      0.18      26      61 ..      32      67 ..      14      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                 B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 26 vepakvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 +++ +vlv+G G+ Gl+A++   + g kVt+++  +
   CDO72572.1 32 AHRLHVLVVGCGMGGLAAAHCLGQAGHKVTLFESAA 67
                 45668**************************99765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.5    0.0006      0.67       1      28 [.      37      64 ..      37      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0006
                EEEES-SHHHHHHHHHHHHHTHCEEEE- CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlil 28
                ++++G+G  G   a++L +ag++vtl  
  CDO72572.1 37 VLVVGCGMGGLAAAHCLGQAGHKVTLFE 64
                68***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3115.48
//
Query:       CDO72573.1  [L=334]
Description: hypothetical protein BN946_scf184983.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-65  219.3  12.8    8.1e-65  219.2  12.8    1.0  1  DUF3533   Protein of unknown function (DUF3533)


Domain annotation for each model (and alignments):
>> DUF3533  Protein of unknown function (DUF3533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2  12.8   4.5e-69   8.1e-65      16     345 ..       4     333 ..       1     334 [] 0.96

  Alignments for each domain:
  == domain 1  score: 219.2 bits;  conditional E-value: 4.5e-69
     DUF3533  16 ywGalyrrsdrlknlnvlvVneDeggseltpvvgeavaqainettss.slgtwtvvnpsefkeseeeveelvhkekywgaivvkenateklyaalsang 113
                 ywGal +  + + nl  l++++D+        +g+ ++qa+++ ++     +w++++ ++ + ++ ++ + v +e++w a+v+++nat +l +a   ng
  CDO72573.1   4 YWGALASSAKLVGNLDALFIDRDGS------RIGQGLTQAVQKYSAPgPNLNWRFIKATNLS-DDSDIIRMVLQEQIWVAVVIQPNATFRLATAR-MNG 94 
                 *************************......99********99999999999*********9.********************************.*** PP

     DUF3533 114 assynstelleliyesgRdattvssyilpaltqleaaalakygsqllqqliqslsntaqaaqlsna.......llaspiafnsidlrPftdgvalaplq 205
                 + +y+++ +++++y ++R++ +   y++p++tq+ +a +++y +++ q + +++++  q ++++ +       +++++i+++ ++lrP++ ++a a++ 
  CDO72573.1  95 DHTYDPSTAIKVYYSQARNEIATGNYVVPITTQVLQATTSAYATSTAQRVFAQINSNGQPNSTALQmianapqTISPAISWTMVNLRPYQAPAAQAVTL 193
                 ******************************************999999999999988777776555677789*************************** PP

     DUF3533 206 vgliyliiltffqfaflgklhaemglsrklkfkqllvyrllisvvslfvlSlffslvslafqvdf.tvafGr.agFvvyWmitwlvmaavglanenvas 302
                 vg i+l+i++f+ +++   ++a +  s+++ f  +l++rl++ ++++f lSl + l++laf++++ t++fG+ agF+++W++ +l maa+gl +e +++
  CDO72573.1 194 VGNIFLCIFAFMITMANSTARAIV--SPHMAFMPYLALRLIVPLLAYFPLSLSYALINLAFDLPInTNRFGQgAGFMIFWVYVYLGMAALGLSIEAMIT 290
                 ************************..***************************************6689***99************************* PP

     DUF3533 303 ilgppylpvwllfwvilNvsstfvPlelspgFYrygyalPlhn 345
                 il p++ p++l +++  Nvs+ ++P el p+ Y+yg  +P+ n
  CDO72573.1 291 ILTPRFTPFFLFTLILYNVSPVVLPDELQPAIYTYGSGFPIWN 333
                 ****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2320.53
//
Query:       CDO72574.1  [L=442]
Description: hypothetical protein BN946_scf184983.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-28   98.3  24.5    6.2e-28   97.7  24.5    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7  24.5   3.4e-32   6.2e-28      13     325 ..      92     430 ..      80     438 .. 0.81

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.4e-32
       MFS_1  13 silgpalplalaedlgispseigl....................lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllv 90 
                 ++++      ++++l+is+ ++++                    l t+++lg++v+++p ++l +r+ + +vl ++ ll+a   ++ +  ++++  +++
  CDO72574.1  92 TAVNYGNLYGMTKTLHISGNQFSWlasgestnrgikeptlsrrtLDTAFYLGYLVGNYPDSWLLQRYPAGKVLSITTLLWATI-MITTpACTNFASIMA 189
                 4444444449**************999999999999999999999999***********************************.555522499889*** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrks 183
                  r++ G+ +++++p++  +++ w++++e ++    ++++++ + i+g  l+  +  ++       W ++f+il++++++++v+ ++++p++p++ +  +
  CDO72574.1 190 NRFFLGVLEAIITPGMTLMTSIWYAQSEVPFRHLAWYSFNGWAGIFGGFLAYGVG-HIEhpqialWKYIFLILGGMCVVFAVILWFFFPDSPVKARFLT 287
                 ***********************************************99999999.666799********************88888888888888888 PP

       MFS_1 184 pkeee............kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqe.vlglsglllaglllallalvgailallagrlsd 269
                  +e+             ++  ++++ +  k+ l dp  w    +l+++++++++    ++ +  +   + + ll ++  ++++++v+   +l+ag++++
  CDO72574.1 288 NEEKIlavkrvaeakvgVKNTQFKWYQ-VKHALVDPTTW----ILFVATIATQIPNGIITNF-STvLIKST-LLNTV--SSAVQIVS---MLIAGWILR 374
                 88887***9999999999999999999.********666....4444444444433333333.22034444.56666..99999999...99******7 PP

       MFS_1 270 rlgrrrrlllallllllaalglallavt..ssavllllvlvl..iGfglgfvfpsllala 325
                      ++++   + +++aa++l++l+    ++ ++++++  +  +Gf+l++v+++ + l+
  CDO72574.1 375 I----ITMTACNVTCIIAAASLVYLPSDqrWNHLVSYWFTSFetVGFALSLVMVANNRLV 430
                 6....7999999999999999999999955333333333333558888777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3316.18
//
Query:       CDO72575.1  [L=528]
Description: hypothetical protein BN946_scf184983.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-29  102.8  31.1    2.5e-29  102.3  31.1    1.1  1  MFS_1            Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3  31.1   1.4e-33   2.5e-29      42     353 .]      92     418 ..      74     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.4e-33
       MFS_1  42 algaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpl 139
                 alg++v+++p ++l + +   +vl ++ ll+a   ++ +  ++++   ++ r++ Gl +++++p++a l++ w++++e ++   +++++++ + i+g  
  CDO72575.1  92 ALGYLVGNYPDSWLLQHYPTGKVLAITTLLWATV-VITTpACTGFAGTMANRFFLGLLEAIVTPGMALLTSIWYAQSEVPFRSLIWYSFNGWAGIFGGF 189
                 89********************************.666633499889**************************************************** PP

       MFS_1 140 lggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee............kgtgpaplvpawkallkdpvlwillialllff 220
                 ++  +  ++       W ++f+il+++s++++v+ ++++p++p++ + ++p+e+             ++  ++++ + +k+ l dp  w+l++a++ + 
  CDO72575.1 190 VAYGIG-HIEnpkialWKYIFLILGGMSAVFAVILWFFFPDSPVDARFFTPEEKVlavkrvaeaklgVKNTKFKWYQ-IKQALVDPKTWLLFVASIAAQ 286
                 ******.55569**************************************************999999999999999.***********6666666665 PP

       MFS_1 221 fgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfp 319
                  + +g+++ + +++ + +g++  l+++ll a+++ v +++ llag++  r++++r +++a + ++++ ++ +++ ++s++ +  l+ + ++ ++++ f+
  CDO72575.1 287 -IPNGIVSNFSTIIIKGMGFT-TLQSTLLDAASSGVQIASLLLAGWICMRFKNMRVITMAAGNITCIIAAACVTYLPSDQKWNRLIAYWFTSFQSVGFS 383
                 .6666666666667*******.899999999999999999*************99999999999999999999999999*****9999999999999** PP

       MFS_1 320 sllalasdlapp.eeagtasglfntagslggalgp 353
                 ++l+++s++++   +  + ++++ + +++g ++gp
  CDO72575.1 384 LSLVMISNNIGGfTKKTFTTAVTFVGYCVGNIIGP 418
                 **********552666677777779999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3537.64
//
Query:       CDO72576.1  [L=177]
Description: hypothetical protein BN946_scf184983.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1209.40
//
Query:       CDO72577.1  [L=303]
Description: hypothetical protein BN946_scf184983.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.034   13.6   0.0    1.7  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.9e-06     0.034      57      95 ..     106     144 ..      56     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-06
                     EEEEEEEETGGTSTTEEEEE.EEETT-TTEEEEEEEBTTB CS
  Glyco_hydro_16  57 vvtafylssedekahdEiDi.EflGndtgkvqtnvygkGk 95 
                     +++a++    d+++++EiD+ E + nd+   q++++++  
      CDO72577.1 106 TWPALWEVGADWPNQGEIDVlEGV-NDQAPNQSTLHTSSG 144
                     8******9999***********99.889999999997644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2271.38
//
Query:       CDO72578.1  [L=114]
Description: hypothetical protein BN946_scf184983.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-12   46.6   0.7      4e-12   46.2   0.7    1.2  1  COX7C     Cytochrome c oxidase subunit VIIc


Domain annotation for each model (and alignments):
>> COX7C  Cytochrome c oxidase subunit VIIc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.7   2.2e-16     4e-12      18      62 ..      27      73 ..      10      74 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 2.2e-16
                XX-S.--S.TTTSSSS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       COX7C 18 sghy.keg.pysnLPFsknnKipfavkywgflgvgFalPFlavrwQl 62
                + h+ ke  +++n+PF  +n+ +fav+y g  +++Fa+PF+av +Ql
  CDO72578.1 27 GLHPlKEHaAHHNMPFTYDNRRKFAVRYAGAAATFFAIPFVAVAYQL 73
                33331477799***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 865.88
//
Query:       CDO72579.1  [L=305]
Description: hypothetical protein BN946_scf184983.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.7   1.3      0.019   15.7   1.3    2.4  2  Mif2_N    Kinetochore CENP-C fungal homologue, Mif2, N-termin


Domain annotation for each model (and alignments):
>> Mif2_N  Kinetochore CENP-C fungal homologue, Mif2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   1.3   1.1e-06     0.019      35     123 ..      47     134 ..      40     151 .. 0.80
   2 ?    1.2   4.5     0.032   5.8e+02      62     129 ..     173     252 ..     141     258 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-06
      Mif2_N  35 sPeksekengeeeeeeededesge.edmdleessgpepadllsgrressrlplprarSPaktslksparrnsslaresqeerpsssPsra 123
                 sP+  +++  e++ + +  +++++ +++++ + s  epa + +g+   + +pl r+ SP+k + + + r+  +l ++ ++++ps+ P++a
  CDO72579.1  47 SPDATDRSPAEQSADAQGRRRRSSfSHLNIGTLSLCEPAPIDEGED--EDVPLVRSSSPTKAAASKARRKIGALFQRLHRRKPSKVPRHA 134
                 6666655555555555666666667****************99998..899999*********977777777777888888999999875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.032
      Mif2_N  62 dleessgpepadllsgrressrlplprarSPaktslk..s.parrnsslaresqeerpsssPsraasq.........ktv 129
                 + + s g  pa    gr + +  p+  + SP  t+ +  s + +r++++ r++++  + ssP + +++         k+v
  CDO72579.1 173 SGQASPGVAPAPKTPGRGRCTSAPTTPGASPWSTKSGrsStSWQRSPKTPRSAKSWLSDSSPGSLSITgsvtsslrrKHV 252
                 33455666666667777777888888899999665541131446777777888999999999998877666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2037.83
//
Query:       CDO72580.1  [L=374]
Description: hypothetical protein BN946_scf184983.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-17   62.2   0.0    9.2e-17   61.3   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.1e-14   53.4   0.0    2.6e-14   53.0   0.0    1.1  1  NAD_binding_4    Male sterility protein
    5.7e-13   48.5   0.0    9.3e-12   44.5   0.0    2.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.2e-10   41.4   0.2    5.9e-07   29.2   0.0    2.6  3  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    8.5e-09   35.6   0.7    0.00024   21.0   0.0    2.3  2  NAD_binding_10   NAD(P)H-binding
     0.0003   20.8   2.2     0.0036   17.2   2.2    2.2  1  KR               KR domain
     0.0032   17.0   0.0      0.012   15.2   0.1    1.9  2  NmrA             NmrA-like family
     0.0073   15.8   0.7       0.02   14.4   0.0    2.0  3  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.058   12.5   0.7        1.4    7.9   0.7    2.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   4.6e-20   9.2e-17       1     233 [.      10     290 ..      10     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 4.6e-20
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..............................EEEE--TT-HH.HHHHHHHHHT-SEE CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..............................elveldltdrs.alerlfkeeqpdav 68 
                 +lVtGa+GfiG+ +v +ll++gy+v+g  r  ++ +t ++  +                                + + l  ++ a++++++  ++d v
  CDO72580.1  10 VLVTGANGFIGQWVVLELLSRGYTVHGTVRTADKVATLSDLVArkspegkvrfkgfvvpditavratpaaapfMTCSAGLSSQDgAFDEAVQ--GVDGV 106
                 79*****************************77777665554499**************************886666667766669999999..9**** PP

                 EE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHH.TCTEEEEEEEGGGGT...............SCSSSSBSTCSTTS----SSHHHHHHHHHHH CS
   Epimerase  69 ihlAavggvaassedpadfieknlqgtlnlleaarka.gvkrllflsSsevYG...............kdaeqpkeettltgplkpnspYaaaKlagek 151
                 ihlA   +++   edp++ i+  ++gt+ +l+ a ka  vkr++ +sS +                  +d  + +  + +  + +    Y a+K+++e+
  CDO72580.1 107 IHLASPTSIH--LEDPQAAIKPAVKGTTSILHSALKArTVKRMVIASSISAIAsgsicpprvyteedwNDRAV-QVTENEGRNAPGLIKYEASKTLAER 202
                 ***7766665..59******************999887999*******6665536666666655544322211.222222223356678********** PP

                 HHHHHHHHHT....-EEEEEEESEEESTT....S-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-S CS
   Epimerase 152 lveayaaqyg....lnaiilrlfnlyGpr....ngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagd 233
                  ++++ +++     ++ ++++++ ++Gp      + ++   v pa++ k+l ++         +a    ++v+D+ e+++ +le  +ag 
  CDO72580.1 203 AAWEFMEKHRagvcFDLCVINPSLVFGPMvddtLPSPDALPVTPAMVYKALFAR--PSPAECTSACFNCVDVRDITEMFVKALETEEAGG 290
                 *********7689999*************9865455557789999999999988..45556679999*****************966654 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.3e-17   2.6e-14       1     209 [.      12     234 ..      12     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.3e-17
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHH.......HHTTTEEEEE--TTSGGGG--HHH..HHHHHHH CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallk.......elaerikvveGDlseprlGLseed..lqelaee 87 
                    +TGa GF+G+ ++ +LL++    +++  vR+ ++ + +  l   +++k+ + +++         +a r ++ ++ ++    GLs++d  ++e ++ 
     CDO72580.1  12 VTGANGFIGQWVVLELLSRGY--TVHGTVRTADKVATLSDL---VARKSPEGKVRFkgfvvpdITAVRATPAAAPFMTCSAGLSSQDgaFDEAVQG 102
                    7****************9987..9********998888777...55555555553368889999999****************98754499***** PP

                    --EEEE--SS-S..STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCC..HHHH CS
  NAD_binding_4  88 vdviihsaAtvnf.depykellrvNveGtrevlelakklkklkvllhvST..ayvngeregeveekvyeegekeekldederaklkglpn..tYeq 178
                    vd +ih a  +++  e+ + ++++ v+Gt  +l  a k +  k ++  S+  a+++g        +vy e++ ++++ + +++++++ p   +Ye 
     CDO72580.1 103 VDGVIHLASPTSIhLEDPQAAIKPAVKGTTSILHSALKARTVKRMVIASSisAIASGSIC---PPRVYTEEDWNDRAVQVTENEGRNAPGliKYEA 195
                    *********99861568889**********************999999988444444444...56999999999999999999999999888**** PP

                    HHHHHHHHHHHHHHHH---E....EEEEE-EEE-....- CS
  NAD_binding_4 179 sKalaEklvrearrrsglpv....vivRpsiitg....e 209
                    sK laE+   e +++++  v    +++ ps + g    +
     CDO72580.1 196 SKTLAERAAWEFMEKHRAGVcfdlCVINPSLVFGpmvdD 234
                    *********9999887766444449*******9955541 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   4.7e-15   9.3e-12       1     191 [.      11     237 ..      11     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 4.7e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee..lkevrvlD.................lrespelleelskvnvkk.......viegDvtdkdkleealegvdvvihl 73 
                 +vtG+ GF+G+ +v eL++++     +vr +D                 +r++  +  +++ v+ +        +  g   +    +ea++gvd vihl
  CDO72580.1  11 LVTGANGFIGQWVVLELLSRGYtvHGTVRTADkvatlsdlvarkspegkVRFKGFVVPDITAVRATPaaapfmtCSAGLSSQDGAFDEAVQGVDGVIHL 109
                 69******************9866679************99666666664444444444444444336677542444444555689************* PP

   3Beta_HSD  74 aslvdvagkltedeimkvnvkGTrnvleacvka.gvrvlvYtSsaevvgpnslgeeilngdEeleyesl...........hqdaypesKalaEklvlka 160
                 as + ++ ++ +    k  vkGT ++l +++ka  v+++v  Ss++++   s   + +  +E+++   +               y  sK laE++  + 
  CDO72580.1 110 ASPTSIHLEDPQA-AIKPAVKGTTSILHSALKArTVKRMVIASSISAIASGSICPPRVYTEEDWNDRAVqvtenegrnapGLIKYEASKTLAERAAWEF 207
                 ******9966665.77889********99988637*************998888888888888876555332222222112236999******999999 PP

   3Beta_HSD 161 NgrtlknggrlyTcaLRpagiyGegdkllvp 191
                  + + + g  +  c + p+ ++G+  + ++p
  CDO72580.1 208 ME-KHRAGVCFDLCVINPSLVFGPMVDDTLP 237
                 88.7788889999***********8777665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     3e-10   5.9e-07       1      49 [.      11      57 ..      11      76 .. 0.76
   2 !    9.4   0.0   0.00032      0.64      76     129 ..     103     152 ..      91     156 .. 0.85
   3 ?   -2.4   0.0       1.3   2.5e+03     226     243 ..     272     289 ..     258     327 .. 0.52

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3e-10
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...T CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkee 49
                   L+TG +GfiG++++  Ll++gy+vhg+vr +++++  +++ l  +++ e
     CDO72580.1 11 LVTGANGFIGQWVVLELLSRGYTVHGTVRTADKVA--TLSDLVARKSPE 57
                   9****************************998855..455555444433 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00032
                    -SEEEE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  76 pdevynLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaSt 129
                    +d v++LA    ++  +e+P++ ++  v Gt+ +L  + ++   + +r+++aS+
     CDO72580.1 103 VDGVIHLASPTSIH--LEDPQAAIKPAVKGTTSILHSALKAR--TVKRMVIASS 152
                    599*****999987..59******************997765..4679999998 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
                    HHHHHHHHHHHHHCSS-- CS
  GDP_Man_Dehyd 226 vkDyveamwlmlqqdkpe 243
                    v+D+ e+++++l+ +++ 
     CDO72580.1 272 VRDITEMFVKALETEEAG 289
                    444444444444444332 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.2e-07   0.00024       1      36 [.      14      48 ..      14      59 .. 0.92
   2 !   12.9   0.1   3.8e-05     0.076      48     101 ..      90     155 ..      69     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaele 36
                    GA+G +G+ +v ell+r g++v+  vR+++k+a l+
      CDO72580.1 14 GANGFIGQWVVLELLSR-GYTVHGTVRTADKVATLS 48
                    9****************.5*************9875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.8e-05
                     TT-CCHHHHHHTT-SEEEES---TCC...HHHH.........HHHHHHHHHHCT--EEEEEEETTT CS
  NAD_binding_10  48 vtdvedlaealkgadaVvsalggggk...deeg.........aknivdaakeagvkRfvlvsaigv 101
                      ++  +  ea++g+d V+  +++++    d ++         +  +  a+k+  vkR+v+ s+i +
      CDO72580.1  90 SSQDGAFDEAVQGVDGVIHLASPTSIhleDPQAaikpavkgtTSILHSALKARTVKRMVIASSISA 155
                     45567899***********9987777766444467777777566667899*************987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   2.2   1.8e-06    0.0036       2     141 ..       9     157 ..       8     162 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.............--HHHHH..............HHHHHHHTT-EEEE----TT-HHHHHHHHHHH CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsa...........aadedska..............liaelealgaevevvaaDvsdkdavealleei 75 
                 ++l+tG+ G +G+ ++  l+++g + +  + R+a           +      +               i++++a+ a   ++ +    +++  a    +
  CDO72580.1   9 AVLVTGANGFIGQWVVLELLSRGYT-VHGTVRTAdkvatlsdlvaR------KspegkvrfkgfvvpDITAVRATPAAAPFMTCSAGLSSQDGA----F 96 
                 689*****************99953.44555554223333333221......012222233334333444444444444444444333333322....2 PP

                 HHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHH.HHHHHTTTS--SEEEEEEEHHHHH CS
          KR  76 kaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGaw.nLhelledesldffvlfSSiagll 141
                 ++  + + Gvih A        ++   ed +++++p vkG+   Lh +l+ ++++ +v+ SSi+++ 
  CDO72580.1  97 DEAVQGVDGVIHLASP------TSIHLEDPQAAIKPAVKGTTsILHSALKARTVKRMVIASSISAIA 157
                 2222566777777654......56778999**********85379*******************975 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   6.1e-06     0.012       1      98 [.      10     148 ..      10     160 .. 0.66
   2 ?   -2.6   0.0       1.7   3.4e+03     177     205 ..     265     293 ..     257     305 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.1e-06
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S................-SHHHHHHHHSTTEEEES-TT.............................. CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt................kselakslkeaGvelvkgdld.............................. 53 
                 +lv+Ga G +G+ vv  ll++g++v   vR                                    ++                               
  CDO72580.1  10 VLVTGANGFIGQWVVLELLSRGYTVHGTVRTAdkvatlsdlvarkspeG-----------------KVRfkgfvvpditavratpaaapfmtcsaglss 91 
                 79****************************9855555444444333330.................333333333555566666666666666666666 PP

                 -HHHHHHHHTT-SEEEE---GG...........S-HHHHHHHHHHHHHHHS.-SEEE CS
        NmrA  54 dkeslvealkgvdvvfsvtgfy...........skeiedgkklvdAakeaG.vkhfi 98 
                 ++   +ea++gvd+v+   + +           +  ++  + + + a +a  vk+++
  CDO72580.1  92 QDGAFDEAVQGVDGVIHLASPTsihledpqaaiKPAVKGTTSILHSALKARtVKRMV 148
                 888999999999999988776644555554444444445555555555555566655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
                 S-EE.-HHHHHHHHHHHHHHHHHHHTTEEE CS
        NmrA 177 avll.daeeDiGafvikilkdprklkgkri 205
                 a ++ ++++Di ++ +k+l+ ++ + g+ri
  CDO72580.1 265 ACFNcVDVRDITEMFVKALETEE-AGGERI 293
                 44556788888888888887544.455555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05      0.02       2      64 ..       9      73 ..       8      82 .. 0.80
   2 ?   -2.1   0.2       1.1   2.3e+03     151     178 ..     123     150 ..     120     156 .. 0.84
   3 ?   -3.6   0.0       3.3   6.5e+03     138     154 ..     183     198 ..     175     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreev 64
                +vlvtGa + IG+ ++ el+++G++v  + r+++k++++ + + ++  + k+ +  + v d ++v
  CDO72580.1  9 AVLVTGANGFIGQWVVLELLSRGYTVHGTVRTADKVATLSDLVARKspEGKVRFKGFVVPDITAV 73
                69**********************************88887777776666666666655555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHGGGTEEEEEEE CS
   adh_short 151 AsKaavagltrslakelaptgirvnava 178
                 A K av+g t+ l+  l+ + ++ +++a
  CDO72580.1 123 AIKPAVKGTTSILHSALKARTVKRMVIA 150
                 6799999999999999999999988887 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.3
                 GGTSB-TTBHHHHHHHH CS
   adh_short 138 agkvpvagvaaYsAsKa 154
                  g    +g++ Y AsK 
  CDO72580.1 183 EG-RNAPGLIKYEASKT 198
                 44.45678889999995 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.7   0.00072       1.4      69     133 ..      96     157 ..      10     163 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00072
                      HHHHTT..T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHT.T-SEEEEEEEGGGSS CS
  Polysacc_synt_2  69 lekaleelkvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaiea.gvkkvvliStDKAvn 133
                       ++a++  +vd v+h A    + l  e p  aik  v gt+++++ a++a  vk++v+ S+  A+ 
       CDO72580.1  96 FDEAVQ--GVDGVIHLASPTSIHL--EDPQAAIKPAVKGTTSILHSALKArTVKRMVIASSISAIA 157
                      334444..8999999999887766..6789999999999999999997652799999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.33s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2300.57
//
Query:       CDO72581.1  [L=351]
Description: hypothetical protein BN946_scf184983.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-43  147.6   0.0    2.9e-41  141.6   0.0    2.0  2  NmrA            NmrA-like family
    6.8e-15   55.4   0.0    1.4e-14   54.4   0.0    1.6  1  NAD_binding_10  NAD(P)H-binding
    6.5e-05   22.5   0.0    0.00013   21.5   0.0    1.6  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0024   16.9   0.0     0.0039   16.3   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.041   14.0   0.0      0.092   12.9   0.0    1.7  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
      0.065   12.6   0.0       0.11   11.8   0.0    1.4  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
       0.14   11.6   0.2       0.41   10.1   0.0    1.8  2  adh_short       short chain dehydrogenase


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   1.1e-44   2.9e-41       1     201 [.       6     204 ..       6     217 .. 0.90
   2 ?    4.2   0.0      0.01        27     201     229 ..     233     261 ..     220     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 1.1e-44
                 EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG....S-HHHHHHHHHHHHHHHS CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy....skeiedgkklvdAakeaG 93 
                 I+v+GaTG+qG+svv++llk  + + vra++Rd++s +a++l ++Gve+vk+dl + e   +a+ ++ +vf  t+fy    + e   gk++vdAa++aG
  CDO72581.1   6 IAVTGATGQQGSSVVDFLLKepETFAVRAITRDPTSPAAQALVARGVEVVKADLSSLEETTAAFTDAWGVFGLTQFYvhgfEGEQLHGKNIVDAAVKAG 104
                 89******************999*********************************************************999999************* PP

                 -SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE.-HHHHHHHHHH CS
        NmrA  94 vkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll.daeeDiGafvi 191
                 vkh+++S++   + +      a   + sKa ie+ v a+gip+tfvy ++++enf + +    +   +++   +++   + p+  ++ ++++D G  v+
  CDO72581.1 105 VKHLVWSTVEGREGEC-----AAISWRSKALIEDRVIASGIPHTFVYIPMYYENFWTDFFA--PSYDEEK--GFNWTVGFLPDVPIFaFSVTDLGGLVV 194
                 *********9999555.....7789******************************987766..3333333..36666666666666678********** PP

                 HHHHHHHHHT CS
        NmrA 192 kilkdprklk 201
                  ++ +p+k+ 
  CDO72581.1 195 PAFREPEKYT 204
                 *******984 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.01
                 TTEEEEE-SEEE-HHHHHHHHHHHHTS-E CS
        NmrA 201 kgkriklagntlsgneivelfekkigktv 229
                  g  ik   + l++ +i++ f++++g+++
  CDO72581.1 233 AGAKIKTVVEWLTLRDIASQFSEVTGEKA 261
                 688999********************985 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.3e-18   1.4e-14       1     142 [.      10     146 ..      10     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 5.3e-18
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHC..HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-....--TCCHHHHHHHHHHHHHHC CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpekl..aeleaeeglevvegdvtdvedlaealkgadaVvsal....ggggkdeegaknivdaakea 88 
                     GAtG+ G+ +v+ ll++   ++v+a++R+p +   ++l  + g+evv++d+++ e+ ++a+++a  V+  +     g ++++   knivdaa +a
      CDO72581.1  10 GATGQQGSSVVDFLLKEPeTFAVRAITRDPTSPaaQAL-VARGVEVVKADLSSLEETTAAFTDAWGVFGLTqfyvHGFEGEQLHGKNIVDAAVKA 103
                     9****************************864311344.479*************************99997776444446667*********** PP

                     T--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEE CS
  NAD_binding_10  89 gvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivr 142
                     gvk++v+ +  g +     e            ++ k+  e+ + asg+  T+v 
      CDO72581.1 104 GVKHLVWSTVEGREG----ECAA-------ISWRSKALIEDRVIASGIPHTFVY 146
                     *******88776553....2222.......234556666666666666666665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     5e-08   0.00013       1      62 [.       6      71 ..       6     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5e-08
                EEEETTTSHHHHHHHHHHHHCTSE..EEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgye..vigldrlssasntarledl..elveldltdrsalerlfke 62
                i VtGatG+ Gs +v+ ll++  +  v +++r++++ + ++l     e+v++dl   ++++++f +
  CDO72581.1  6 IAVTGATGQQGSSVVDFLLKEPETfaVRAITRDPTSPAAQALVARgvEVVKADLSSLEETTAAFTD 71
                78********************6656999999999999888887789********99999999885 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0039       1     114 [.       7     111 ..       7     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +vtG++G  G+++v  L+++ e   vr++  +  ++  + l   +v+ v+++D+ + ++ ++a  ++  v+ l +   v+g   e+      ++G +n+
  CDO72581.1   7 AVTGATGQQGSSVVDFLLKEPETFAVRAITRDPTSPAAQALVARGVE-VVKADLSSLEETTAAFTDAWGVFGL-TQFYVHGFEGEQ------LHG-KNI 96 
                 69***************************999999998888888888.*********************9999.677788844444......788.89* PP

   3Beta_HSD 100 leacvkagvrvlvYt 114
                 ++a+vkagv+ lv+ 
  CDO72581.1  97 VDAAVKAGVKHLVWS 111
                 *************84 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.6e-05     0.092       3      56 ..       6      53 ..       4     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
                EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-B CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgva 56
                +av+Ga+G  G++vv+ + +++++  v a+ r++++  ++ +   +     gv+
  CDO72581.1  6 IAVTGATGQQGSSVVDFLLKEPETFAVRAITRDPTSPAAQAL---V---ARGVE 53
                89******************************9932222222...2...22333 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.4e-05      0.11       2      36 ..       8      44 ..       7      71 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
                   EETTTSHHHHHHHHHHHHC..T-CCEEEEEEESS-TT CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlek..gyevhgivrrsssfnt 36
                   +TG +G+ Gs ++++Ll++   + v  i+r+ +s ++
     CDO72581.1  8 VTGATGQQGSSVVDFLLKEpeTFAVRAITRDPTSPAA 44
                   9****************98334556666666555554 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00016      0.41       1      71 [.       4      72 ..       4      78 .. 0.92
   2 ?   -1.9   0.0      0.76     2e+03      13      34 ..      93     114 ..      92     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                k + vtGa++  G  +++ l+ke  + +v +++ ++   +a+ l + g  + ++++D+++ ee+ a++ +a
  CDO72581.1  4 KLIAVTGATGQQGSSVVDFLLKEPETFAVRAITRDPTSPAAQALVARG--VEVVKADLSSLEETTAAFTDA 72
                6789*********************************99****99865..99************9998876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.76
                 HHHHHHHHHHTT-EEEEEESCH CS
   adh_short  13 GraiakelakeGakvvvvdrse 34 
                 G++i+++ +k+G+k++v +  e
  CDO72581.1  93 GKNIVDAAVKAGVKHLVWSTVE 114
                 7888888888888888855444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2353.97
//
Query:       CDO72582.1  [L=459]
Description: hypothetical protein BN946_scf184985.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3441.23
//
Query:       CDO72583.1  [L=481]
Description: hypothetical protein BN946_scf184985.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3560.89
//
Query:       CDO72584.1  [L=390]
Description: hypothetical protein BN946_scf184985.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-48  165.4  15.1    1.9e-25   89.6   3.8    2.0  2  Glyco_hydro_28  Glycosyl hydrolases family 28
     0.0022   17.9   0.8     0.0081   16.1   0.1    2.3  2  Cadherin_5      Cadherin-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   3.8   2.1e-29   1.9e-25       5     171 ..      55     232 ..      52     236 .. 0.90
   2 !   82.2   3.3   3.8e-27   3.4e-23     193     320 ..     234     374 ..     233     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 2.1e-29
  Glyco_hydro_28   5 vlsqlevpksgelldllklkgplksgttvtlegtttak...........vkekngkddivisgekitvlgisGkgtidGqGqawwdgkgkkkkeg 88 
                     + s++++p+s +l+ ++kl+ +   +++++l+gt +++           +   + +d++ +     ++++++G+gtidG Gqaw d  +k  ++ 
      CDO72584.1  55 ACSTVTIPTSTTLSIQSKLNMTGTLNKHINLQGTIKFNpdidywtdnafT--FDFQDQAAFWLLGGKNIVLDGGGTIDGSGQAWYDAFAK--DSS 145
                     56899****99999999999999999************999988766332..33344566777778999******************998..999 PP

  Glyco_hydro_28  89 kkkpkflvikkvknskiknlniknspvfhfsvesgkdltisditidasagd....hNtDgidvgsskgvtisntnikngDDciains 171
                        p +l++ + +n +++n+++++ p     v++g+ +t+ +iti a +++    +NtDg d+ +s+ v i+++ni+ngDDc++ ++
      CDO72584.1 146 TLRPILLTLFQATNVTVQNIRMIDGPEWINFVNEGQHITFRNITISAVSTSknaaKNTDGWDIFRSDDVVIEDSNINNGDDCVSFKP 232
                     99***************************9******************9999999****************************9876 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 3.8e-27
  Glyco_hydro_28 193 Svggrsd..ntVknvtvkdskvknsenGvRIKtik...gatgtvsnvkyeniklknvaypividqdYen.keptgkptsgvkisdvtfknvtgtv 281
                     S+g+++   + V+nv   + +++n++nG RIK++      +g v n++++  + +nv +pi+idq Ye   + + k +s+  i+dv f+n+ gt+
      CDO72584.1 234 SLGQYEGeyDIVQNVLATNIHMSNAQNGARIKAWAgkgVGSGLVKNITFSGFVETNVDNPIIIDQCYETsADDCAKYPSNTYIQDVWFNNISGTS 328
                     66766554588***********************965556899*************************97889***9****************** PP

  Glyco_hydro_28 282 ks.aeav..kllcekgskcsdvtmsdvkitg.g...kstskcknvk 320
                     ++ ++av  +l c+ + +csd++++d+++t  +     +++c+nv+
      CDO72584.1 329 SGkEKAVvaSLSCSPDGRCSDINVNDINVTPpSkygTPQFSCQNVQ 374
                     996444423699**9999***********9543444999*****98 PP

>> Cadherin_5  Cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1     9e-07    0.0081       5      85 ..      28     111 ..      25     122 .. 0.77
   2 ?   -1.3   0.1      0.25   2.3e+03      56      74 ..     221     241 ..     187     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9e-07
  Cadherin_5   5 Pvvssevtla.agseDtaltitaaq..LLanasDvdgdtLsvssltadaenGtvv..dngdGtftftpeanynGevtlsYtvsDge 85 
                 P +s+++tl+ +gs D +  ++aa+   ++ ++ + + tLs++s    + +Gt+    n  Gt+ f+p+ +y  +  ++++ +D  
  CDO72584.1  28 PSASGTCTLSsSGSDDAPALLKAAAdsACSTVTIPTSTTLSIQSKL--NMTGTLNkhINLQGTIKFNPDIDYWTDNAFTFDFQDQA 111
                 777777666514566667777766544677777777899***9864..3458998557899**********************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
  Cadherin_5  56 vdngdGtftftpe..anynGe 74 
                 ++ngd+ ++f+p    +y+Ge
  CDO72584.1 221 INNGDDCVSFKPSslGQYEGE 241
                 567888888888732355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2809.92
//
Query:       CDO72585.1  [L=495]
Description: hypothetical protein BN946_scf184985.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3610.76
//
Query:       CDO72586.1  [L=508]
Description: hypothetical protein BN946_scf184985.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3370.79
//
Query:       CDO72587.1  [L=453]
Description: hypothetical protein BN946_scf184985.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-07   29.6   0.8    1.4e-06   28.1   0.3    2.2  2  F-box-like  F-box-like
    0.00012   21.9   0.3     0.0029   17.4   0.0    2.8  2  F-box       F-box domain
  ------ inclusion threshold ------
      0.023   15.1   0.4        4.2    7.9   0.2    3.3  3  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.3   2.3e-10   1.4e-06       3      47 ..       7      49 ..       5      50 .. 0.95
   2 ?   -3.5   0.0       1.7     1e+04       7      17 ..     341     351 ..     341     356 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.3e-10
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47
                 LP ++L  I++ L+ +dL  +a+ ++ ++ +a  tplL+r+l +
  CDO72587.1  7 FLPLDVLPLILENLHRRDLHTCAQLSKAFHHAA--TPLLYRTLDV 49
                7********************************..*******986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.7
  F-box-like   7 EiLlqIFsyLp 17 
                 E L+++F  L+
  CDO72587.1 341 ECLCTVFPKLE 351
                 78999997663 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.8e-07    0.0029       6      35 ..       8      37 ..       6      40 .. 0.94
   2 ?    1.3   0.1     0.056   3.3e+02       7      20 ..     224     237 ..     208     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.8e-07
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwri 35
                LP++vl  ILe+L  +dl  +++ Sk ++ 
  CDO72587.1  8 LPLDVLPLILENLHRRDLHTCAQLSKAFHH 37
                9*************************9987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.056
                 -HHHHHHHHHTS-H CS
       F-box   7 PsevlrhILerLpl 20 
                 Ps+ +++IL +Lp 
  CDO72587.1 224 PSAAILEILTFLPR 237
                 677999***99995 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.91   5.4e+03       3      30 ..     139     169 ..     139     172 .. 0.64
   2 ?    7.9   0.2    0.0007       4.2       2      31 ..     189     221 ..     188     236 .. 0.78
   3 ?    3.3   0.0      0.02   1.2e+02      15      31 ..     339     356 ..     333     361 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.91
                 --EEE--.SS---E-S-..HHH-TT--EEE- CS
       LRR_4   3 LevLdLs.nNqltdipl..leklpnLkeLdL 30 
                 L++L ++  + l+d  +  l+ ++ L+++++
  CDO72587.1 139 LRELVIRtFCGLSDDAWdrLQDFTGLTKVSI 169
                 6667777667777644455556888888776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0007
                 S--EEE--.SS---E-S-...HHH-TT--EEE-. CS
       LRR_4   2 nLevLdLs.nNqltdipl...leklpnLkeLdLs 31 
                 +L++L L+ +  l+   +   l+ lpnL++L L 
  CDO72587.1 189 SLTHLELGvS-SLSRAHPlylLSHLPNLRVLRLK 221
                 6999999965.8996666364446*******994 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.02
                 E-S-HHH.-TT--EEE-. CS
       LRR_4  15 dipllek.lpnLkeLdLs 31 
                 di+ l   +p+L++L++s
  CDO72587.1 339 DIECLCTvFPKLETLSCS 356
                 5555555599*****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3207.26
//
Query:       CDO72588.1  [L=360]
Description: hypothetical protein BN946_scf184985.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-21   75.3   0.1    1.5e-20   73.6   0.0    1.8  2  Evr1_Alr      Erv1 / Alr family
    1.8e-12   47.7   0.0    2.8e-12   47.0   0.0    1.3  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   1.6e-24   1.5e-20      10      97 ..       1      81 [.       1      84 [. 0.91
   2 ?   -1.6   0.0      0.44   3.9e+03       7      42 ..     329     357 ..     326     358 .. 0.55

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.6e-24
                HHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHCHHHCC CS
    Evr1_Alr 10 laaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcsedkvke 97
                ++ ++pe+pt++++++l   +++++l++++ypC eCa +f+++l++ pp+  ++sr++++lWl+ +HN+Vn+rl+k+efdc   +++e
  CDO72588.1  1 MTLRFPEDPTQDERDAL---NNYFHLLSRLYPCGECAAEFQQLLKKFPPQ--TSSRRSAALWLCFVHNQVNERLGKPEFDCA--HLDE 81
                67889999999888877...****************************98..9****************************9..5555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.44
                 HHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSC CS
    Evr1_Alr   7 lHtlaaevpekpteeqqkelavlkaflkliakfypC 42 
                 lH l +e++e + + ++      ++++k+ +++y C
  CDO72588.1 329 LHHLEVEYAE-SFAVNK------ENWRKVASRVYGC 357
                 6777777765.222222......4456666666666 PP

>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   3.1e-16   2.8e-12      70     212 ..     131     307 ..      88     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 3.1e-16
  TP_methylase  70 eal...aealragkdVvllvsGDPlvygtgselvealrareagieveviPGvsslqaaaarlgiplteggevlsvl.lpglakeeereleallan.. 160
                   e+    + + ++++d+ llv GDP+ ++t+  +v  lrar  +i+++vi   s+++a+ a+  +  + g++v+ v+ +++++  +++ ++++ +n  
    CDO72588.1 131 ETQsdeILKDADKEDISLLVVGDPYGATTHTDIV--LRARSLNIPTRVIHNASIMNAVGACGLQLYNFGQTVSLVFfTETWK--PDSFYDRIKENad 223
                   222233555566689*******************..99999******************99777777777777777755544..8888888888888 PP

  TP_methylase 161 ..gdtlvll..................kaprk......laelaelL.......kea...lyddttpvavveragtedervvrgtleel 212
                      +tlvll                  +   +      +++++ +L       + +   ++d+t+ +a+ + +g ++er+v gtl+el
    CDO72588.1 224 lgMHTLVLLdikvkeqseenlargrkiY---EpprymsIPQAVSQLleiermrR-SgtlIPDETLAIALSRVGGGPEERIVAGTLAEL 307
                   8889*****7777777776665555552...04445665555555555555423.258566666666666668888*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2621.51
//
Query:       CDO72589.1  [L=571]
Description: hypothetical protein BN946_scf184985.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-89  298.8   0.0    5.3e-89  298.4   0.0    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.5e-12   47.3   0.2    6.1e-12   45.4   0.2    2.0  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
        0.2   11.7   0.1       0.73    9.9   0.0    1.9  2  DUF4539          Domain of unknown function (DUF4539)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.4   0.0   8.9e-93   5.3e-89       4     313 ..     230     565 ..     227     566 .. 0.97

  Alignments for each domain:
  == domain 1  score: 298.4 bits;  conditional E-value: 8.9e-93
                  HHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   4 lrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvfqi 97 
                  ++ + r+l lr e  s+vl+lr+ +++++r+ l e++ +e+++P+L+++++e+ga+lFk+       +++    +Ltqs+qlyle+++++ +++vf++
   CDO72589.1 230 IQADLRHLVLRGETASAVLKLRAALLNSFRQSLIEHDLLEVTPPCLVQTQVEGGATLFKL-------DYYgqpaFLTQSSQLYLETCLPS-LGDVFCV 319
                  67889*******************************************************.......77778889***************.******* PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCC.CCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS........... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakd.iefvirrnskdlkkpfkrltykeaieklnei........... 183
                   ++FRaE+s+t+rhl+E+t++eae++fi+++d+m+ +e +i+++v+++l+++a+  + ++ ++n++ + +pf rl+y++ai++lne+           
   CDO72589.1 320 QESFRAENSHTRRHLSEYTHLEAELAFITFDDLMDHIETVICETVDKLLQNPASAaLIKQLNPNFTAPVRPFLRLSYVDAIKWLNEHdirheaedaqg 417
                  **************************************************9987614567889999******************************** PP

                  .................-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTS....TTBBSEEEEEETTE.EEEEEEEB--SHHHHHHHHHH CS
                  .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .................gkdldkaderalvkkeknepvfvtdfPaelkpFyarkeedd....kkltesyDllingv.ElvgGslRiedpeeleeklks 259
                                   g+d+ +a er +++    +pvf++ fPaelk Fy++k  ++    ++ tes Dll++gv E+vgGs+Ri d++el e +k+
   CDO72589.1 418 nvikddqgkpvmvehkvGDDIAEAAERRMTD-ILGSPVFLYGFPAELKAFYMKKMPKNradgPTFTESCDLLMPGVgEIVGGSMRIADEKELLEAYKR 514
                  *******************************.999******************999988999************************************ PP

                  CCHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 260 kgldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  +g+d   +++++w++++++yG+++hgG+glG++R++++l++   +r+ +++P++
   CDO72589.1 515 EGID---PAPYYWFTDQRKYGTCEHGGYGLGVERFLAWLANRYTVRECSLYPRW 565
                  ****...**********************************************9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.2     1e-15   6.1e-12       1      75 [.     129     207 ..     129     208 .. 0.86
   2 ?   -1.6   0.0      0.47   2.8e+03      15      36 ..     341     362 ..     330     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1e-15
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET.HHHHHHHTTS-TTSEEEEEEEEEECTTS.....SEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr.eeatklaenlkeGdvvrvtGrvkrrpgg.....elelkveeiel 75 
                      V+v G+v++   r+ + +if++lrDgtg +q+vl    ++t+ a +l+ ++ ++v G++++ p+g       el+v+ +++
       CDO72589.1 129 VKVDGWVHRL--RDQKEIIFVVLRDGTGYLQCVLSGkVAQTYDALTLTLESTIEVVGTLQTVPEGktapsGHELVVDYWRV 207
                      89********..************************777777777788**************7765555558888877765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.47
                      ETTEEEEEEEETTEEEEEEEET CS
  tRNA_anti-codon  15 ggkvifidlrDgtgriqvvlfr 36 
                      ++ ++fi+ +D  + i+ v+  
       CDO72589.1 341 EAELAFITFDDLMDHIETVICE 362
                      56789*****999888877655 PP

>> DUF4539  Domain of unknown function (DUF4539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00012      0.73      15      46 ..     140     169 ..     130     181 .. 0.79
   2 ?   -3.0   0.0       1.3   7.8e+03      21      39 ..     344     362 ..     334     368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
     DUF4539  15 tlnslgdalvtlkDptGeidgtihrkvleeyg 46 
                  +++   ++v+l+D tG +++++  kv ++y 
  CDO72589.1 140 DQKE--IIFVVLRDGTGYLQCVLSGKVAQTYD 169
                 3333..49*******************99885 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
     DUF4539  21 dalvtlkDptGeidgtihr 39 
                  a++t+ D  ++i+ +i +
  CDO72589.1 344 LAFITFDDLMDHIETVICE 362
                 4899999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4038.23
//
Query:       CDO72590.1  [L=502]
Description: hypothetical protein BN946_scf184985.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3973.38
//
Query:       CDO72591.1  [L=230]
Description: hypothetical protein BN946_scf184985.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1699.68
//
Query:       CDO72592.1  [L=417]
Description: hypothetical protein BN946_scf184985.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3102.17
//
Query:       CDO72593.1  [L=424]
Description: hypothetical protein BN946_scf184985.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-36  124.9   0.0    1.4e-23   83.6   0.0    2.2  2  Pkinase      Protein kinase domain
    1.6e-19   70.2   0.0      2e-11   43.7   0.0    2.2  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
        0.4    8.5   1.6       0.53    8.1   1.6    1.1  1  DUF5521      Family of unknown function (DUF5521)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   2.3e-27   1.4e-23       3     108 ..     166     272 ..     164     273 .. 0.96
   2 !   45.5   0.0   9.9e-16   5.9e-12     162     264 .]     265     362 ..     263     362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 2.3e-27
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                  +++lG+GsfG+V  ++++++ + +A+K+++kek+  +k+ +++++E ++l+ ++hp+i++l+++f+++ +ly+v+++v+ggel++ll+r+  +++  a
  CDO72593.1 166 IQRTLGTGSFGRVHLVRSRHNMRFYAIKVLNKEKIVRMKQeSHTRNEQAMLQAVQHPFIINLWGTFQDTANLYMVMDFVPGGELFTLLRRSNRFPDPVA 264
                 5789*******************************99999899******************************************************** PP

                 HHHHHHHH CS
     Pkinase 101 kkiakqil 108
                 k++a++i+
  CDO72593.1 265 KFYAAEII 272
                 ****9985 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 9.9e-16
                 GGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....H CS
     Pkinase 162 eYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....a 255
                 ++ A E++++ +y k+vD+++lGv+++e+l+g ppf+   +      ++  ++   ki +    +  ++  + ++a+dl+ k +++dp+kR++     a
  CDO72593.1 265 KFYAAEIIGNARYNKSVDWYALGVLIFEMLSGLPPFH---E-----PDISPVVLYEKIAQ--GPSCIKWPAFHPNATDLILKFMERDPSKRFGnlqhgA 353
                 68999********************************...2.....24555555556664..4577888999********************9999999 PP

                 HHHHTSGGG CS
     Pkinase 256 eellqhpyl 264
                  ++ +hp++
  CDO72593.1 354 GDVFAHPWF 362
                 99*****98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.3e-15     2e-11       3      95 ..     166     256 ..     164     262 .. 0.84
   2 !   24.5   0.0   2.4e-09   1.4e-05     169     249 ..     264     345 ..     258     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.3e-15
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  ++++lG G+fG+V+  + +    ++    a+K+l++e+  + +++++  +e +++++++hp i++l g   ++ +l++v+++v+gG+L + Lr++
   CDO72593.1 166 IQRTLGTGSFGRVHLVRSR----HNMRFYAIKVLNKEKivRMKQESHTRNEQAMLQAVQHPFIINLWGTFQDTANLYMVMDFVPGGELFTLLRRS 256
                  6899**********99999....66677899999554311445556677799999999**********************************997 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 2.4e-09
                  GGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTT..TTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 169 vkWmapEslkekkftsksDvWsfGvllwEiftlgespy..pglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                   k++a E++ + +++++ D ++ Gvl++E+++ g  p+  p++++  ++ek+ +g  + k    +++ ++l+ k +e+dp++R
   CDO72593.1 264 AKFYAAEIIGNARYNKSVDWYALGVLIFEMLS-GLPPFhePDISPVVLYEKIAQGPSCIKWPAFHPNATDLILKFMERDPSKR 345
                  589*****************************.99997225679999**********999999******************99 PP

>> DUF5521  Family of unknown function (DUF5521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.6   8.8e-05      0.53     575     648 ..      89     163 ..      65     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 8.8e-05
     DUF5521 575 tlrnankpstsqaarkesqsqerd.skrhdddrsssslqtasaslslskkkrilqgpsaklvavpqpeasaqtkg 648
                    na+ +sts+aa + + s++   s +h++ +s s+++t+      s+k+ + q p a ++ v +++ s +  +
  CDO72593.1  89 KHVNADSASTSSAASSYTVSSQSAlSLSHEHRASISTQRTSLHEWVDSQKQAMQQDPPAAEIEVRRTKGSYRLSD 163
                 45699******99998776655550555555555555666666788999***************99998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2885.19
//
Query:       CDO72594.1  [L=96]
Description: hypothetical protein BN946_scf184985.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 702.93
//
Query:       CDO72595.1  [L=342]
Description: hypothetical protein BN946_scf184985.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-17   61.3   0.0    1.4e-16   60.6   0.0    1.4  1  DDE_3          DDE superfamily endonuclease
    2.9e-09   37.0   4.9    5.6e-07   29.7   2.1    3.1  3  HTH_Tnp_Tc3_2  Transposase
    1.1e-06   28.2   0.1    3.1e-06   26.8   0.1    1.7  1  HTH_38         Helix-turn-helix domain
      7e-06   25.7   0.1    5.1e-05   22.9   0.0    2.4  2  HTH_23         Homeodomain-like domain
    5.2e-05   23.3   0.0    5.2e-05   23.3   0.0    3.0  3  HTH_28         Helix-turn-helix domain
    0.00035   20.3   0.0    0.00088   19.0   0.0    1.7  1  HTH_IclR       IclR helix-turn-helix domain
    0.00066   19.6   0.1      0.007   16.3   0.0    2.3  2  HTH_11         HTH domain
     0.0027   17.7   2.6     0.0034   17.4   0.0    2.4  2  HTH_29         Winged helix-turn helix
      0.003   17.1   1.0     0.0053   16.2   0.0    1.9  1  Sigma70_r4     Sigma-70, region 4
     0.0046   16.3   0.7      0.023   14.1   0.1    2.4  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
     0.0059   16.5   0.1      0.012   15.5   0.1    1.5  1  HTH_Crp_2      Crp-like helix-turn-helix domain
     0.0087   16.1   0.0      0.018   15.1   0.0    1.5  1  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
     0.0089   15.9   0.7       0.02   14.7   0.0    1.9  2  MarR_2         MarR family
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.062   13.0   0.0    1.8  1  GntR           Bacterial regulatory proteins, gntR family
      0.025   14.6   0.1        2.4    8.3   0.0    3.0  2  HTH_7          Helix-turn-helix domain of resolvase
      0.052   13.5   0.0       0.13   12.2   0.0    1.7  1  MarR           MarR family
       0.13   12.1   0.0       0.36   10.8   0.0    1.7  1  TrmB           Sugar-specific transcriptional regulator TrmB
       0.15   12.0   2.3       0.41   10.5   0.0    2.4  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.18   11.7   1.9       0.38   10.7   0.1    2.1  2  Phage_NinH     Phage NinH protein


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.4e-19   1.4e-16       2     138 ..     148     295 ..     147     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.4e-19
       DDE_3   2 vvfiDEsgfqlgtvrrrawak..kGkr....er.leeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqak.....kivlilDna 88 
                 vvf DEs+f+l ++ +r w +  kG+         + +g +g+v++ g ++ +g  ++  +e+t++a+  ++ le+ l   l+       +i++  Dn 
  CDO72595.1 148 VVFSDESQFSLFPTPGRQWCRrrKGEAhfaqNIiPRVTGGGGKVTVWGCITSRGVGRLHRIEGTMDAKMYRHILEDSLLGTLHDHrlgpsTIIFQHDND 246
                 89*****************75227777665322345667777*****************************999986655555445666699999**** PP

       DDE_3  89 siHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrs 138
                 + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r +
  CDO72595.1 247 PKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPR 295
                 **************..****************************9984444 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.017        16      15      41 ..      25      46 ..      17      51 .. 0.83
   2 !   29.7   2.1   5.9e-10   5.6e-07       2      64 ..      72     131 ..      71     136 .. 0.92
   3 ?   -0.7   0.0       1.9   1.8e+03       4      27 ..     239     262 ..     237     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.017
  HTH_Tnp_Tc3_2 15 tlreLanelkeeGksvsreTirrrLrk 41
                   +l ++a+++     ++ r+T+rr+L++
     CDO72595.1 25 SLSDIARHV-----HCDRSTVRRVLQR 46
                   566666666.....9**********97 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 5.9e-10
  HTH_Tnp_Tc3_2   2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLrkaglkkrkprkkplLskknrkaRL 64 
                    r++v  +++ +   +++ +++l     + s++T+rrrL ++gl +r+ r+kplL+k   ++R 
     CDO72595.1  72 RELVLAIDRGRALNATDAQRQL---TPHASARTVRRRLAEIGLPGRVRRRKPLLKKSSLAQRR 131
                    7899999999999*********...9******************************9988885 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.9
  HTH_Tnp_Tc3_2   4 IvrlvrkdPritlreLanelkeeG 27 
                    I+ + ++dP+ t+r +++ l++++
     CDO72595.1 239 IIFQHDNDPKHTARLVQEWLEHQN 262
                    6777789******99988876655 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   3.3e-09   3.1e-06       3      43 ..       2      46 ..       1      46 [. 0.91

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.3e-09
      HTH_38  3 khLsleeReeIerlla..eG..lslreIArrLgrspsTIsRElkR 43
                ++Ls + R++I +l++   G  lsl++IAr++++++sT+ R l+R
  CDO72595.1  2 TRLSTAKRQKILDLYQpvNGepLSLSDIARHVHCDRSTVRRVLQR 46
                589************88788668888*****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.4e-08   5.1e-05       3      44 ..       5      50 ..       3      54 .. 0.85
   2 ?   -0.7   0.0       1.5   1.4e+03      30      38 ..      98     106 ..      85     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.4e-08
      HTH_23  3 sereRlrilllla....eGlsvreIAreLgvsrrTvyrwlkryree 44
                s  +R++il l++    e ls ++IAr+ ++ r+Tv+r+l+r   +
  CDO72595.1  5 STAKRQKILDLYQpvngEPLSLSDIARHVHCDRSTVRRVLQRVSSS 50
                66799999999999866689*********************96445 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
      HTH_23  30 srrTvyrwl 38 
                 s rTv+r l
  CDO72595.1  98 SARTVRRRL 106
                 789999755 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   5.6e-08   5.2e-05       1      52 []       8      64 ..       8      64 .. 0.87
   2 ?   -0.2   0.8       1.2   1.1e+03       5      41 ..      74     111 ..      72     120 .. 0.62
   3 ?   -2.7   0.2         7   6.6e+03      30      37 ..     164     171 ..     164     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.6e-08
      HTH_28  1 qRleiiklla..aGh..svreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +R +i+ l++  +G+  s +++Ar+++++r+tv+r ++r  + G  +   r+ +rpr
  CDO72595.1  8 KRQKILDLYQpvNGEplSLSDIARHVHCDRSTVRRVLQRVSSSGKLDYDIRPkGRPR 64
                5999******99***99**********************999888777777535775 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.2
      HTH_28   5 iikllaaGhsvreaArelgisr.rtvyrWikryeegGi 41 
                  ++++ +G++ +++ ++ ++++  + +  ++r+ e+G+
  CDO72595.1  74 LVLAIDRGRALNATDAQRQLTPhASARTVRRRLAEIGL 111
                 56777777777776666666555777777777777665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7
      HTH_28  30 yrWikrye 37 
                 ++W++r  
  CDO72595.1 164 RQWCRRRK 171
                 68999954 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.3e-07   0.00088      16      41 ..      21      46 ..      12      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.3e-07
                BSS-BHHHHHHHHTS-HHHHHHHHHH CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqt 41
                +++l+ls++Ar+ +  +Stv+R Lq 
  CDO72595.1 21 GEPLSLSDIARHVHCDRSTVRRVLQR 46
                5789********************95 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.4e-06     0.007      12      46 ..      20      57 ..       8      63 .. 0.79
   2 ?    0.5   0.0      0.63   5.9e+02      28      39 ..      98     109 ..      96     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.4e-06
      HTH_11 12 argpisgeeLAeeLnvSrrtvrrdIkaLeelg...vpI 46
                + +p+s +++A++ ++ r+tvrr +++ +++g   ++I
  CDO72595.1 20 NGEPLSLSDIARHVHCDRSTVRRVLQRVSSSGkldYDI 57
                3455***********************99999666555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.63
      HTH_11  28 SrrtvrrdIkaL 39 
                 S rtvrr+++++
  CDO72595.1  98 SARTVRRRLAEI 109
                 78******9976 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.6e-06    0.0034      14      59 ..      25      68 ..      19      71 .. 0.80
   2 ?   -1.7   0.7       3.1     3e+03      29      55 ..      99     124 ..      97     131 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.6e-06
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGlaalld..rrrsgrprnrlse 59
                + s+iA+ + ++r+tv+r+l r    G  +l+   r+ +grpr  ls 
  CDO72595.1 25 SLSDIARHVHCDRSTVRRVLQRVSSSG--KLDYdiRP-KGRPRI-LSK 68
                4899***********************..44433455.799995.775 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
      HTH_29  29 vyrwlkrfeegGlaalld.rrrsgrprn 55 
                  +++++r  e Gl    + rrr++ +++
  CDO72595.1  99 ARTVRRRLAEIGL--PGRvRRRKPLLKK 124
                 5777888888886..4444566666654 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.7e-06    0.0053       8      43 ..       8      46 ..       3      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.7e-06
                HHHHHHHHHH...TTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4  8 rerevlelrf...geglTleEIgerlgiSrerVrqiekr 43
                + +++l l+    ge+l+l++I+++ +  r++Vr+ + r
  CDO72595.1  8 KRQKILDLYQpvnGEPLSLSDIARHVHCDRSTVRRVLQR 46
                6688999999************************98766 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.4e-05     0.023      29      51 ..      25      47 ..      21      48 .. 0.91
   2 ?   -1.0   0.1       1.2   1.2e+03      40      49 ..      98     107 ..      96     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
  HTH_Tnp_ISL3 29 svkavArqlgvSwtTVwrildry 51
                  s +++Ar+++++ +TV+r+l r+
    CDO72595.1 25 SLSDIARHVHCDRSTVRRVLQRV 47
                  889*****************986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
  HTH_Tnp_ISL3  40 SwtTVwrild 49 
                   S++TV+r+l 
    CDO72595.1  98 SARTVRRRLA 107
                   789****986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.3e-05     0.012      21      68 .]      23      74 ..       4      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ET.EE.EEES-HHHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis..rg.rr.irildleaLral 68
                pl+  ++A+++   r+tv r+l++ +  g ++   + ++  ril+ + Lr+l
  CDO72595.1 23 PLSLSDIARHVHCDRSTVRRVLQRVSSSGKLDydIRpKGrPRILSKQDLREL 74
                8999***************************986343333999999999985 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05     0.018       8      32 ..      23      47 ..      21      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
                T--HHHHHHHTTSSHHHHHHHHHHH CS
    HTH_AraC  8 nltiediAdelgfSrsyFsrlFkke 32
                +l++ diA +++++rs+ +r+++++
  CDO72595.1 23 PLSLSDIARHVHCDRSTVRRVLQRV 47
                79*******************9985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.2e-05      0.02      18      49 ..      22      51 ..      17      55 .. 0.89
   2 ?   -2.9   0.2       7.2   6.8e+03      31      44 ..      91     104 ..      89     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
                TTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTT CS
      MarR_2 18 pgrdltvgelarrlglsksavsrilkrLvaaG 49
                ++  l+ +++ar+ + ++s+v r+l+r ++ G
  CDO72595.1 22 EP--LSLSDIARHVHCDRSTVRRVLQRVSSSG 51
                34..9**********************98877 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.2
                 HTSSHHHHHHHHHH CS
      MarR_2  31 lglsksavsrilkr 44 
                  +l+++a  r+++r
  CDO72595.1  91 RQLTPHASARTVRR 104
                 58889998888887 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.6e-05     0.062      21      54 ..      21      53 ..       9      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
                TSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        GntR 21 GdkLPsereLaaefgVsrttvReALrrLeaeglv 54
                G++L s +++a   + +r+tvR++L+r ++ g +
  CDO72595.1 21 GEPL-SLSDIARHVHCDRSTVRRVLQRVSSSGKL 53
                99**.**********************9998865 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0025       2.4      22      43 ..      24      45 ..       5      47 .. 0.90
   2 ?    2.9   0.0      0.12   1.1e+02       1      15 [.      61      75 ..      61      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0025
                --STTTSSSS---SSSS--SS- CS
       HTH_7 22 isiskIAkevnisRsTvYRyla 43
                 s s+IA+ v + RsTv R+l 
  CDO72595.1 24 LSLSDIARHVHCDRSTVRRVLQ 45
                5779****************95 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
                S---SS-HHHHGGGG CS
       HTH_7  1 GRpsklskndinrvv 15
                GRp+ lsk d+ ++v
  CDO72595.1 61 GRPRILSKQDLRELV 75
                9*******8876666 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.13      16      40 ..      22      46 ..      20      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                TTEEHHHHHHHHTS-HHHHHHHHHH CS
        MarR 16 gplsvseLakklgvskstvtrvldr 40
                +pls+s++a+++++++stv rvl r
  CDO72595.1 22 EPLSLSDIARHVHCDRSTVRRVLQR 46
                689******************9976 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038      0.36      20      50 ..      21      51 ..      18      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
                HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCT CS
        TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkG 50
                 +p++ ++ia+++  +rs+v +vL++ ++ G
  CDO72595.1 21 GEPLSLSDIARHVHCDRSTVRRVLQRVSSSG 51
                578999*******************988776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00044      0.41      18      36 ..      24      42 ..      20      46 .. 0.88
   2 ?   -0.1   0.5       0.9   8.5e+02      30      39 ..      98     107 ..      96     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00044
  HTH_AsnC-type 18 isyaeLAervGlSestvlr 36
                   +s +++A+ v++++stv+r
     CDO72595.1 24 LSLSDIARHVHCDRSTVRR 42
                   699***************9 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.9
  HTH_AsnC-type  30 SestvlrRvr 39 
                    S+ tv+rR++
     CDO72595.1  98 SARTVRRRLA 107
                    899*****85 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00041      0.38      21      38 ..      28      45 ..      25      50 .. 0.88
   2 ?   -0.5   0.2       1.3   1.2e+03      18      36 ..      85     105 ..      76     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00041
  Phage_NinH 21 EvARrlkcsRatvRkYvr 38
                ++AR+++c+R+tvR+ ++
  CDO72595.1 28 DIARHVHCDRSTVRRVLQ 45
                68************9775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
  Phage_NinH  18 nqtEvARrlkcs..RatvRkY 36 
                 n t++ R+l  +    tvR+ 
  CDO72595.1  85 NATDAQRQLTPHasARTVRRR 105
                 889999999755115689985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2279.39
//
Query:       CDO72596.1  [L=1467]
Description: hypothetical protein BN946_scf184985.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-64  216.3   0.3    7.6e-64  215.6   0.3    1.3  1  SNF2_N      SNF2 family N-terminal domain
    1.6e-17   63.8   0.1    1.2e-15   57.8   0.0    2.5  2  Helicase_C  Helicase conserved C-terminal domain
    1.5e-10   41.4   0.0    4.2e-10   39.9   0.0    1.8  2  ResIII      Type III restriction enzyme, res subunit
    5.7e-05   22.9   0.0    0.00028   20.7   0.0    2.1  2  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.3   1.7e-67   7.6e-64      51     349 ..     658     935 ..     645     936 .. 0.89

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 1.7e-67
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                  ++ + +GiLaDemGLGKT+q++al++++             + + gp+Li+vP+s+l +We e+++++++ ++  l y+g++k++k+  ++  +    
  CDO72596.1 658 IHSRNLNGILADEMGLGKTIQTIALLAHLAC----------DRGIWGPHLIIVPTSVLLNWEMEFKKFLPGFKV--LSYHGNTKQRKE-LRQGWNNKYH 743
                 567789*********************4444..........234679*************************86..777776543443.5556666778 PP

                 --EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTT.T--HHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreep.fgekqtfdkllqr 247
                 ++v++t+Y   sr+a      +v+k+++w +++lDE+h++kn +s+  ++++ +++ +r++ltGTP+qn+l++l++Ll+fL+ +  f + + f +++ +
  CDO72596.1 744 FNVCVTSYALASRDA------HVFKRKRWYYMILDEAHMIKNFKSQRWNTLLMFRSFRRLLLTGTPLQNNLTELWALLQFLMSGTdFANLKEFGEWFAN 836
                 89*************......9***********************************************************99754999********** PP

                 HHH.........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHH CS
                 xxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 248 pie.........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilell 337
                 p e          ++++++ +L+++l++++lrr k+dvek+lP+k e+i++++lsk +r +Y              + +r+e   + +s   +ki ++l
  CDO72596.1 837 PLEkaielgaidDETQQRVTKLHTVLRPYLLRRLKRDVEKELPQKYEHIVMCPLSKRQRFLYD------------EFMSRAETRHDLQSGVYQKIANIL 923
                 ***********999999**********************************************............555555555566665557899*** PP

                 HHHHHHHH---X CS
                 xxxxxxxxxxxx RF
      SNF2_N 338 lelrqacnhpql 349
                 ++lr+++nhp+l
  CDO72596.1 924 MQLRKVVNHPDL 935
                 **********98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.023     1e+02      18      74 ..     695     751 ..     678     800 .. 0.74
   2 !   57.8   0.0   2.7e-19   1.2e-15       2     111 .]    1176    1288 ..    1175    1288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.023
                 EEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESG CS
  Helicase_C  18 kilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfn.kgesdvLiatd 74 
                   li+v+t   l+    + +k+  g+kv+ +hg  ++++r+e  + +n k +++v +++ 
  CDO72596.1 695 PHLIIVPTSVLLNWEMEF-KKFlpGFKVLSYHG--NTKQRKELRQGWNnKYHFNVCVTSY 751
                 556677777755432222.344569********..5666667666676345555666655 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 2.7e-19
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlpr 95  
                  kl+ l +ll ++++ g+++lif++ ++ l+ ++ +l+ +g+ +++l+g ++ ++r+ i e+fn + ++  ++ +++ ++ Gi+++++++Vi++d ++
  CDO72596.1 1176 KLQVLARLLrERKAGGHRVLIFTQMTRILDILETFLNLHGYLYLRLDGATKIEDRQYITERFNsDPRIFcFISSSRSGGVGINLTGADTVIFYDSDF 1272
                  778889999899999************998889999999************************5445556999999********************* PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  n++   q  +R++R+g
  CDO72596.1 1273 NPQMDRQCEDRAHRIG 1288
                  **************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   9.4e-14   4.2e-10       3     169 ..     643     803 ..     641     805 .. 0.75
   2 ?   -4.0   0.0       2.9   1.3e+04      56      96 ..    1331    1376 ..    1320    1396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 9.4e-14
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.... 96 
                 +lr+yQ+  + ++l++++  r+ +g+++ + G GKT+  ++l ++l+  +++    l++vp+  +l  ++ efkkfl+  +     +++g++k++    
  CDO72596.1 643 NLRPYQQAGL-EWLASIH-SRNLNGILADEMGLGKTIQTIALLAHLACDRGIWgPHLIIVPTS-VLLNWEMEFKKFLPGFK---VLSYHGNTKQRkelr 735
                 799**97655.6778999.9*******************999999999888777899999986.5667*********9853...334444444443331 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATp 169
                    +++ + +++vt++  +++d        + ++r+r  ++i DEaH ++  k   w+  l +f+++ +l lT+Tp
  CDO72596.1 736 qGWNNKYHFNVCVTSYALASRD-------AHVFKRKRWYYMILDEAHMIKNFKsqRWNT-LLMFRSFRRLLLTGTP 803
                 2333344445555555555555.......5******************99874447777.788899*********9 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.9
                  -EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B-- CS
      ResIII   56 kflflvprkslleqtleefkkflseayke.....igkkvsgdkkka 96  
                  + lf+   ++ l ++l ef++  + ++++     +++ vs+d +++
  CDO72596.1 1331 RSLFVEGHENALTRALGEFEDAEDAQAAQiaareEMQLVSEDAQDF 1376
                  6688888888888999999888887776666555555566666655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.45     2e+03      79     115 ..     240     277 ..     224     305 .. 0.70
   2 !   20.7   0.0   6.3e-08   0.00028      16     141 ..     664     785 ..     645     809 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.45
                 EEEETTSSHHHHHHHHH.TTCSEEEEEHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
        DEAD  79 lliiggvaardqlskld.ngvdivvgtpgrlddllstg 115
                 +  + ++++++ l++l  n++d+v+   ++ + +++++
  CDO72596.1 240 HFSVASDKEKKRLKALArNTLDLVIEEWKKAVYHVRQQ 277
                 44455677777777775366999998888888888332 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 6.3e-08
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvdivvgtpgrlddlls 113
                 + ++a e G GKT    i++l++++ ++g  g   li++Pt  L +    ++kkf+     +vl+  g++++r++l++   n++++ v  ++  +   +
  CDO72596.1 664 NGILADEMGLGKTIQ-TIALLAHLACDRGIWG-PHLIIVPTSVLLN-WEMEFKKFLPG--FKVLSYHGNTKQRKELRQGWnNKYHFNVCVTSYALASRD 757
                 55788899*****98.5666666655355555.6789999999986.67789***996..789999999999999998852556665555555554445 PP

                 CTSSHCTTEEEEEEETHHHHHHTTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEadrlldqgfsdf 141
                  + ++ ++  +++lDEa+++ + + +++
  CDO72596.1 758 AHVFKRKRWYYMILDEAHMIKNFKSQRW 785
                 5667789999*********998844443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 9268.30
//
Query:       CDO72597.1  [L=584]
Description: hypothetical protein BN946_scf184985.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-12   47.1  15.6    1.9e-07   30.8   1.9    3.2  2  ArsB      Arsenical pump membrane protein
  ------ inclusion threshold ------
      0.089   12.9   2.5       0.41   10.8   0.3    2.8  2  DUF1003   Protein of unknown function (DUF1003)
       0.29   11.4   5.2        1.7    9.0   1.6    3.5  3  Gate      Nucleoside recognition


Domain annotation for each model (and alignments):
>> ArsB  Arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   6.1   6.4e-07    0.0038      39     215 ..      98     262 ..      84     310 .. 0.70
   2 !   30.8   1.9   3.2e-11   1.9e-07     272     398 ..     417     552 ..     400     577 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.4e-07
        ArsB  39 vnfhdvltvtgiv..wnatlafvaiilislildnigffewaalhmakaakgygvrmfvyvsllgaivaalfandgaaliltpivlamvralhfneklvf 135
                   ++d +  tg v   n    f+++  is+ ld  g+f + a+ +a      g ++f y+ l+ ++   ++ nd   l+ tp +  + r   +n    +
  CDO72597.1  98 GTLRDGIVGTGGVrpLNIMGLFISLAYISISLDATGLFRFLAFWVASRGGSSGRKLFTYLYLFFSLCGIVVGNDPVILVGTPFLAYFTRVAGINPPTAW 196
                 3567777777776334667789************************************************************99999998888876544 PP

        ArsB 136 pfiiasgfiadttslpfvvsnlvnivsadyfhitfidyasrmvvpylfsllasi.ivlylffrks..ipkrydltevkkpvea 215
                  f   s          f v+n+        f ++f  ya+++v+p+l + ++   ++l+++fr    +p+r d+    + v a
  CDO72597.1 197 IF---S---------HFAVANMG-----RLFWVAFKPYAAHVVLPFLAAAVCVFpVLLFVLFRSPtlVPRRIDIGLEPEEVHA 262
                 33...2.........46666664.....4689999999999999999887776625567888863338999998755555544 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 3.2e-11
        ArsB 272 vvkeapwaivffsigmyvvvygvrnagltdvlsdviqaaadq.glfagtigmgfiaailssim.nnlp.tvmidal.....aiagtdthgmmrealiya 362
                 v    p a++ f+  m+++v g+   g  +v++   +a   + g +    gmgf++++l +    n+  t+++  +     + + +      r+  iya
  CDO72597.1 417 VAARLPVALLPFAFLMFILVQGLAAQGWVQVFARWWDAWVRRtGTLGAVGGMGFLTCVLCNFCgTNIGaTILLARVlqewtSSSSAAVNPRTRDGAIYA 515
                 5667899******************************98776156666668********987534554144443331111133445566678******* PP

        ArsB 363 nvigsdlg.pkitpigslatllwlhvlshkgmkiswg 398
                   igs++g p +t   sla llwl++  +kg+++   
  CDO72597.1 516 VAIGSNFGaPTLTFSASLAGLLWLQINRQKGIQVRGL 552
                 *******87899********************98644 PP

>> DUF1003  Protein of unknown function (DUF1003)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.088   5.3e+02       1      20 [.      13      32 ..      13      90 .. 0.86
   2 ?   10.8   0.3   6.8e-05      0.41      13      58 ..     534     576 ..     522     581 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.088
     DUF1003  1 mGsakFlvlftaivilWial 20
                +G++  +++ ++++i+ ia+
  CDO72597.1 13 VGTWPAILTLVLFFIANIAV 32
                69999999999999988776 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.8e-05
     DUF1003  13 ivilWialnllvlpglkpfDpypFillnlvlslqaalaaplIllsq 58 
                   +lW+ +n     +  ++    F +lnl +s+ a+laa ++l+ q
  CDO72597.1 534 AGLLWLQINRQ---KGIQVRGLQFLVLNLPISFVAMLAASVVLVGQ 576
                 55677777744...566777788*********************99 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.13   7.6e+02      43      61 ..      15      33 ..      10      41 .. 0.90
   2 ?   -0.4   0.0      0.23   1.4e+03      49      68 ..     275     294 ..     269     418 .. 0.75
   3 ?    9.0   1.6   0.00028       1.7       4      75 ..     425     503 ..     423     538 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
        Gate 43 dwkatvslltgfaakevvv 61
                +w+a+ +l++ f+a+ +v+
  CDO72597.1 15 TWPAILTLVLFFIANIAVI 33
                7************999886 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.23
        Gate  49 slltgfaakevvvgtlgtly 68 
                 +ll+  +a  v+v+t+g++ 
  CDO72597.1 275 ALLVATLAVLVGVSTIGVPV 294
                 67777777888888888875 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00028
        Gate   4 agpiillasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtly........tsalgel 75 
                 ++p+ +l++il++ l ++++++ ++++ +  +++ g  l     +++lt ++ + ++  + +t+         ts+ +++
  CDO72597.1 425 LLPFAFLMFILVQGLAAQGWVQVFARWWDAWVRRTG-TLGAVGGMGFLTCVLCNFCGTNIGATILlarvlqewTSSSSAA 503
                 689*******************************99.8888889999999988888888877776566666654433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4087.33
//
Query:       CDO72598.1  [L=178]
Description: hypothetical protein BN946_scf184985.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1275.17
//
Query:       CDO72599.1  [L=273]
Description: hypothetical protein BN946_scf184985.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-34  116.3   0.1      1e-17   63.8   0.0    2.4  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1     1e-17   1.8e-13       2      72 ..      10      81 ..       9      88 .. 0.86
   2 !   63.8   0.0   5.6e-22     1e-17       2      93 ..      94     179 ..      93     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1e-17
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTT.TSCSSHHHHHHHHHHHHHHHGGGTTHHHHH CS
   Mito_carr  2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskk.sksaaildvlkkiykeeGlrglyrGllpnl 72
                +++++ +l aGg+aga+++l+++Pld++K+r+q++++  +  +k ++++ +   i++ e  ++ly+Gl++ l
  CDO72599.1 10 PVGIATQLTAGGIAGAMEALCCHPLDTIKVRMQLSRSGRAPgTKPRGFIATGAMIVRRETPLALYKGLGAEL 81
                578899****************************98886550444449*9*******************987 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 5.6e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 el+ ++++++G+++ga++ +  +P+d++Kt    q+  ++      i+++ +++++eeG++++y+G++p++lrvap +a+ f++ye ++ ++
  CDO72599.1  94 ELPSWQHMMIGLVSGAMGPFSNAPIDTIKTPPPGQSAFQR------IAHIAREMWREEGFSSFYKGITPRVLRVAPGQAIVFAVYERVRSVM 179
                 5789*************************97666665544......9****************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1947.09
//
Query:       CDO72600.1  [L=171]
Description: hypothetical protein BN946_scf184985.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1231.29
//
Query:       CDO72601.1  [L=336]
Description: hypothetical protein BN946_scf184985.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2649.78
//
Query:       CDO72602.1  [L=576]
Description: hypothetical protein BN946_scf184985.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4347.78
//
Query:       CDO72603.1  [L=283]
Description: hypothetical protein BN946_scf184985.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1887.20
//
Query:       CDO72604.1  [L=391]
Description: hypothetical protein BN946_scf184985.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-21   77.4   6.0    1.7e-21   76.8   6.0    1.2  1  Peptidase_S8  Subtilase family
      3e-16   59.8   0.1    5.6e-16   59.0   0.1    1.5  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   6.0   1.9e-25   1.7e-21       1     223 [.     173     368 ..     173     386 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.9e-25
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g+gv v v+DtG++ +h++++                    ++a+  +t++++++d++gn   HGth+AG++a        + gva  a +++vkvl
    CDO72604.1 173 GEGVDVYVIDTGINVHHVEFE--------------------GRASWGKTIPRDDVDEDGNG--HGTHCAGTIASR------RYGVAKAAHVIAVKVL 241
                   78999**************99....................789999***********988..**********99......**************** PP

                   STTSB-HH..HHHHHHHHHHHH.CT-S....................EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE CS
                   xxxxxxxxxxxxxxxxxxxxxx.xxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaae.dkvd....................vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslq 173
                   + +g+     +++i+++++aa     +                    v nmslg + + ++ ++     a+n av + g+ + ++aGN++       
    CDO72604.1 242 GSNGSGT--MSDVIAGVIWAAGeA-KKkaaaaleefrktgktshkgsVANMSLG-GGKSQTLDK-----AVNGAV-DAGMHFAVAAGNDN------R 322
                   7776543..49**********944.44599************************.555555554.....9*****.99************......5 PP

                   -TTCEECTTTSTTCEEEEEESTTSSB-TT--B-TT.......-EEEE-S- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 174 agspvgtpstsknvitvgayttegkiapfSsrGpssdgklkpdivapGgn 223
                   + ++ ++p+ ++ +itvga t  +k a+fS++  ++    k + +a +++
    CDO72604.1 323 DACN-NSPAAAEKAITVGASTLGDKRAYFSNHRTCQL---KLAMLALATE 368
                   5555.78999999*******************99995...6666665555 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   6.3e-20   5.6e-16       1      81 [.      51     128 ..      51     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 6.3e-20
                   EEEEEE-TTS-HHHHHHHHHHHHH....HHHHTT....--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsllksvlkge..dsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsvrl 81 
                   +YIV+fk+ +++a   + h++  q l+ s    +   + + g+ + Y+ +f+G+a+k++e+++e+lr +pe+++Ve+Dq+vr+
    CDO72604.1  51 SYIVVFKDSVEPAL-MQNHMNFLQTLHAS----DplAHVFDGLTHVYDSHFKGYAGKFSEATIEQLRVMPEIDYVEKDQVVRT 128
                   6******9887777.77777777766666....344678******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2922.35
//
Query:       CDO72605.1  [L=357]
Description: hypothetical protein BN946_scf184985.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2573.47
//
Query:       CDO72606.1  [L=512]
Description: hypothetical protein BN946_scf184985.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-43  147.6   1.5    5.8e-43  147.1   1.5    1.2  1  Sulfate_transp  Sulfate permease family
    4.9e-10   39.1   0.0    3.2e-06   26.7   0.0    3.2  2  STAS            STAS domain
  ------ inclusion threshold ------
        2.1    7.4   4.1        5.3    6.0   4.1    1.6  1  FUSC-like       FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   1.5   9.7e-47   5.8e-43     127     370 ..       3     247 ..       1     258 [. 0.87

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 9.7e-47
  Sulfate_transp 127 llsqikvllglervskkeslvsvlsslftnlekvnlakvvlgllllvvLlvtkellkklkkl.lvipapaelvavivatlvsaifelkreagvki 220
                      l+ ++++l+ +  ++  +++  + + ft+++k   +++ ++  +l+vL+ ++++++  + + + ++ p  +++v+++tl+s  f   ++ gv i
      CDO72606.1   3 GLTNLEHVLQPK--TTLDKFFFLVENAFTHAHK---LTATISFGALAVLVGMRSFKRVCRRYwFIYRLPEVFIVVVLSTLLSDKF-DWDKDGVEI 91 
                     566677777776..7777777788888888877...889999999*******99877777778999*******************.6888***** PP

  Sulfate_transp 221 vgeip..sg..lpelslpkvdwsllsallpdalaialvglleaiavsksldkkkgykvdsnkELvAlGfsNilsslfgg.lpatgafsrsavnik 310
                     +g++p  +g  + ++ l+k++  +l+++ ++a+ i +vg+l++i ++k+ +++ gy++++n+ELvAlG+ Ni++s+++g lpa+g+++rs +n  
      CDO72606.1  92 LGSVPinTGssFLQFPLRKITLRYLRKTTSTAVLISVVGFLDSIVAAKQNASRFGYSISPNRELVALGAGNIAGSFIPGtLPAYGSITRSKLNGD 186
                     998763366446666666**********************************************************96549************** PP

  Sulfate_transp 311 aGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkel.kklwkls 370
                      G++tq+++lv + +vll+  +l p l+y+Pk+vLa+ii +++ +lL el++  +  wk++
      CDO72606.1 187 LGGRTQMASLVCSTIVLLATFFLLPWLYYLPKCVLASIICLIVFSLLGELPHDaMFYWKMR 247
                     ************************************************9987636667754 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   5.4e-10   3.2e-06       6      86 ..     315     432 ..     310     439 .. 0.93
   2 !    6.3   0.0    0.0012       7.3      79     117 .]     449     487 ..     447     487 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 5.4e-10
                 ECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC.............................................-SEEEEEEEEEEEE-HHHHH CS
        STAS   6 eiegililrldgpidfanaesfkeklkravgeeperve.....................................kkeslkslildlsavsfiDssGvr 67 
                 + +g+li+r+++ +df++  +f   l   ++ +p + +                                      +++   l++ l +v+ iD s+v+
  CDO72606.1 315 DAQGVLIVRIRENLDFGTFAEFPHLLLFPTARTPPNANahrlfctfciantaqlkerlrrlelyghdkhhpadepHRRDADVLVFHLADVDTIDASAVQ 413
                 57899******************99999999999999999**********************************999999******************* PP

                 HHHHHHHHHHHTT-EEEEE CS
        STAS  68 aLkeilkelkrigvevvlv 86 
                  + e+++ +k +g+ ++++
  CDO72606.1 414 IFYELVETYKVRGCGLLVA 432
                 **********999988776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0012
                 TT-EEEEES--HHHHHHHHHTTCGGCC..SEEESSHHHH CS
        STAS  79 igvevvlvnikpevreklektgffdeveeeklfltvhdA 117
                 +gv +++  +k   r+ +ek+g+   ++ee + ++v++A
  CDO72606.1 449 RGVGLYITHLKRGPRRSFEKAGIVGLLGEEAFCKDVASA 487
                 89********************************99987 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.1   0.00088       5.3       4      46 ..     194     236 ..     193     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00088
   FUSC-like   4 vtllcfalaslivqlllpypwlfvlglllstflftmlgalGqr 46 
                 ++l+c +++ l++ +llp+ + ++  +l s++++++++ lG+ 
  CDO72606.1 194 ASLVCSTIVLLATFFLLPWLYYLPKCVLASIICLIVFSLLGEL 236
                 6899************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3633.82
//
Query:       CDO72607.1  [L=730]
Description: hypothetical protein BN946_scf184985.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 5533.82
//
Query:       CDO72608.1  [L=913]
Description: hypothetical protein BN946_scf184985.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-44  151.2   0.0      6e-44  150.6   0.0    1.2  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
      0.022   14.7   0.2      0.072   13.0   0.0    1.8  2  DUF2490   Protein of unknown function (DUF2490)


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   6.7e-48     6e-44      40     321 ..     200     488 ..     171     489 .. 0.88

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 6.7e-48
     Plavaka  40 mkeeyelwfrdplevikellgnpdfadeldyaPereytdekkg...ervysemmtgdwaweqqieekptegatlvpvilssDKTtlsvftgnkeayPvY 135
                 + + y+++ r  +++   l+++  +a ++++++ r ++ +  g    r ++e +t++ +w+++     ++  + +  +l sDKT+ls f g+++ yP+ 
  CDO72608.1 200 TARIYTFYGRSLWDWALTLVRDRILAPHFAWHAIRLFKWN--GvcwVRFITEPYTANAWWRIE--GLLPSNGVPLCFVLYSDKTHLSSF-GSQKGYPIM 293
                 56779999******************************66..32359****************..33345667777899**********.********* PP

     Plavaka 136 lsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvaci 234
                   ++n+p+++r++    +  ++++Lp+ + ++ + +++f    kr ++H+c+ +ile L ++gk g+  +c+d  +r  +pi+ +  aDy+Eq+++a i
  CDO72608.1 294 ARLANLPSAIRNSEGFGGGQVVGFLPVVEDENEEGKASFTA-HKRVVWHECFWIILEFLAKVGKLGELFKCGDDILRLLFPIILILAADYEEQAVMALI 391
                 *****************************988888888888.********************************************************9 PP

     Plavaka 235 ..vqg..wCpkctakkkelgdl...eeselrtreetlelleeaade....lkklwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlv 321
                    qg   Cp c ++++e   l     ++lrt e+ ++l++e+a++     ++ ++  gl+++++ Fw+  p++d++++l+ D LH  + g+f +Hl+
  CDO72608.1 392 rgLQGvaPCPVCLVPAEEQSILgmePLYPLRTVETSQRLVNETANStiaaREAVLQPLGLRPIQNVFWK-IPYCDVYSALSFDRLHAYHSGLFRHHLF 488
                 55344448*******9997542222678***********99998777887777999************6.9*************************97 PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.39   3.5e+03      25      99 ..     514     585 ..     506     614 .. 0.68
   2 ?   13.0   0.0   8.1e-06     0.072       8      80 ..     635     710 ..     630     777 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.39
     DUF2490  25 yRlrd..dlsefnqillrpglgyklnkklsvslgyayeeekekkknntedriwqqflitlkklg..rftlshRfRlEqR 99 
                 +R+r+  ++ e+ ++ +  g+ y+  +k+ v + y +        +++  r +  ++    k++   +   +R  +++R
  CDO72608.1 514 PRWRNldHFAEVAKVTFADGGKYEAISKVLVPATYNI------MSQHPDTRGYRLLQCI-RKYNilDIHAGLRVYTDER 585
                 5555532666999999999999999999999999998......2334555555444444.3333335666666666666 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.1e-06
     DUF2490   8 evkgkikkkwsvsleaqyRlrddlsefnqillrpglgyklnkklsvslgyay...eeekekkknntedriwqqfli 80 
                 + ++ki +k+   + a yR r ++++++q l+r+  +  + +++++++ y+    + + e++++ +  r+++ +l 
  CDO72608.1 635 NYNTKIFEKLHRPVKAAYRNRTNFKNVEQQLARIDHEALVADHIRAHIQYLDdelKGDPEDEEEVPTYRFHHIYLG 710
                 67999***********************************************998445555555577777765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 6249.02
//
Query:       CDO72609.1  [L=189]
Description: hypothetical protein BN946_scf184985.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1486.09
//
Query:       CDO72610.1  [L=134]
Description: hypothetical protein BN946_scf184985.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0019   18.9   0.0     0.0031   18.2   0.0    1.3  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
       0.11   12.3   0.3       0.15   11.8   0.3    1.2  1  DUF4448       Protein of unknown function (DUF4448)


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.5e-07    0.0031       2      93 .]      45     132 ..      44     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.5e-07
  GPI-anchored   2 sPssgevvtagkpvtitWkdsgtdp.....gtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                    P +g+v+  g+  ++tW++ +  p     +   ++L++g     ++   + ++ +   g  ++tvp  + ++++Y l +  +s +    +S++F+i
    CDO72610.1  45 YPHAGTVWYKGQRHNVTWDTAN-HPvnitnKLGRIWLRKGDI---TTPVILGENFDILLGRIEVTVPW-VIPDTDYSLVLFGDSGN----FSPQFSI 132
                   699*****************76.4534443666788888876...77888999999999*******88.66789*******77774....9****97 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   1.7e-05      0.15      24      49 ..      40      65 ..      33      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
     DUF4448 24 sePFCtPkegselkvgktYyiTWdpr 49
                + P   P+ g+ ++ g+ + +TWd+ 
  CDO72610.1 40 TPPVTYPHAGTVWYKGQRHNVTWDTA 65
                557778******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1058.45
//
Query:       CDO72611.1  [L=200]
Description: hypothetical protein BN946_scf184985.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1483.27
//
Query:       CDO72612.1  [L=365]
Description: hypothetical protein BN946_scf184985.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.0   0.1    1.8e-07   31.2   0.1    1.4  1  Sld7_C    Sld7 C-terminal domain
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.36   11.0   0.0    1.6  1  SGS       SGS domain


Domain annotation for each model (and alignments):
>> Sld7_C  Sld7 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1     2e-11   1.8e-07       1      76 [.     292     358 ..     292     360 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2e-11
      Sld7_C   1 eeqnkealsklilagLRlrGlsqseaeeaaekeeykelYhmtykaaeFAlRkelakkklqikleklqdtVekLLkl 76 
                 e++nk+a++k + + L  +G+s++       + e+k l+++ y+++ FAlR+ +a+  + i+++ + + V +++++
  CDO72612.1 292 EKENKTAVKKAVTKCLGKHGISKT-------HAEFKDLFQTCYHGTSFALRRCMAR--SLIEPSVIERFVVAHVTM 358
                 689*********************.......**********************997..556666666655555555 PP

>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     4e-05      0.36      13      52 ..     298     344 ..     283     346 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4e-05
         SGS  13 eekeekke...........eegeaalnklFkklYadadedtrrammKSyve 52 
                   k    +           ++++a+ ++lF++ Y++++   rr m +S +e
  CDO72612.1 298 AVK----KavtkclgkhgiSKTHAEFKDLFQTCYHGTSFALRRCMARSLIE 344
                 222....24556888888888999************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2670.66
//
Query:       CDO72613.1  [L=502]
Description: hypothetical protein BN946_scf184985.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-62  208.3   1.4    1.1e-33  116.3   0.2    2.2  2  Cyclase   Putative cyclase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.2   6.2e-38   1.1e-33       1     135 [.       6     161 ..       6     162 .. 0.89
   2 !   91.1   0.1   3.8e-30   6.8e-26       1     136 []     335     490 ..     335     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 6.2e-38
     Cyclase   1 idLshplsedtpvwp.dp...................islsehtGTHlDapgHfae..ktidelpleelvgpavvldvsakaaaedyeiitaedlea.. 75 
                 +dLsh+l+e+++v+p dp                   is+++htGTH+Dap+Hf +  + id+lpl+++vg++vv+dv++k+     e+it ed+    
  CDO72613.1   6 VDLSHTLDENVQVYPgDPtfsccpvlnikqdgwnvhnISMGTHTGTHVDAPYHFLAkgARIDDLPLSTFVGNVVVVDVTRKN---AKEVITWEDISPhs 101
                 7*************6566778899999***************************998889******************8874...44688*****8855 PP

     Cyclase  76 .alakqgveikpgdivlirTgwskrledkeky.rnpglseeaaewlaekgvkavGvDtlsvD 135
                  +++++    k g +v++rT+ws++ +++++y ++p l ++aa+ l++ gvk++GvD+ls D
  CDO72613.1 102 dVIQRKA-AQKHGVFVFLRTDWSQY-WKSDAYlEHPFLARDAAQRLIDLGVKLIGVDALSPD 161
                 5445554.5689***********99.6789999***************************99 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 3.8e-30
     Cyclase   1 idLshplsedt.pvw.pdp....................islsehtGTHlDapgHfae..ktidelpleelvg.pavvldvsakaaaedyeiitaedle 74 
                 idL++pl ++  p+  ++p                    ++l++htGTH+Dap+Hf+   +t+d+l+l+ l + pavv d++ak+   + e i  +dl 
  CDO72613.1 335 IDLTQPLVPGKvPACaGHPcynaslnyslakgdfanvhaLTLGTHTGTHIDAPYHFFMdgATVDQLDLSILSAvPAVVADLRAKT---SHERIVWDDLT 430
                 799999977443555334455566777888889999999*****************99899********99999*******8874...445679***** PP

     Cyclase  75 aalakqgveikpgdivlirTgwskrledkeky.rnpglseeaaewlaekgvkavGvDtlsvDa 136
                 aa+++++ +     ++l+ Tgws+  +++++y ++p l++++a+ l++ +v+++G+Dt+s D+
  CDO72613.1 431 AAADEIQ-R-SGARVLLLCTGWSRD-WNTPNYsKHPFLDPDVARRLLDLDVQVIGLDTMSPDK 490
                 *998888.3.4678999******99.7899**999*************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3546.36
//
Query:       CDO72614.1  [L=976]
Description: Glycoside Hydrolase Family 31 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-139  466.5   4.2   1.1e-139  466.5   4.2    1.5  2  Glyco_hydro_31   Glycosyl hydrolases family 31
      7e-20   71.1   0.3    2.2e-19   69.5   0.3    2.0  1  Gal_mutarotas_2  Galactose mutarotase-like
    5.5e-06   26.6   0.0    1.4e-05   25.3   0.0    1.7  1  DUF5110          Domain of unknown function (DUF5110)


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.52   3.1e+03     145     165 ..     216     237 ..     139     274 .. 0.67
   2 !  466.5   4.2  1.8e-143  1.1e-139       1     440 []     354     809 ..     354     809 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.52
                     B-TTSHHHHH.HHHHHHHHHHC CS
                     xxxxxxxxxx.xxxxxxxxxxx RF
  Glyco_hydro_31 145 pDftnpeare.wwkkelkkfll 165
                       +++ e+++ ww++ +++f  
      CDO72614.1 216 AAWFEGETEDgWWEETFNSFTD 237
                     3466667777677777766654 PP

  == domain 2  score: 466.5 bits;  conditional E-value: 1.8e-143
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTTSS-HHHHHHHHHHT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdkerFpdpkemvdelhek 95 
                     +++ Gptp++v++qyt+ltG+palp+ walG+hq+r++y ++e+v++v ++f+e++iP+dv++lDi+y +++k+f wd++ Fpdp +m++++++ 
      CDO72614.1 354 FILPGPTPADVFAQYTRLTGTPALPAHWALGYHQCRWNYISSEDVRSVQQRFDEEDIPVDVFWLDIEYAEDHKYFMWDHKLFPDPVDMIKDVEAI 448
                     7899**************************************************************************999***********777 PP

                     T-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS..TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCT........CT--EEEE-STTT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxx RF
  Glyco_hydro_31  96 gvklvvivdpaiskqeeeyeafdegkekgvflknkdgs..ykgk.wpgstafpDftnpearewwkkelkkflld........lgvdglwiDmnep 179
                     + k+vvivdp++++  ++y++++e++e +v++k kdg+  y+g  w+gs+a++Df+np+  +wwk  +k +  +         +   +w+Dmnep
      CDO72614.1 449 ERKMVVIVDPHLKR-TNDYPVYKEATELDVLVKVKDGKtdYEGWcWSGSSAWVDFFNPKSWDWWKGLFKINGPSygwhwtesTENTHIWNDMNEP 542
                     999*********76.56******************9999888889********************7655443326777888778889******** PP

                     B.SCCCCHH.HHCCCTSCETTCC..HHHHCCCHHHHHHHHHH.HHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHH CS
                     xxxxxxxxx.xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 180 snfeegsds.eekeaketkaags..hydvhnlygllmakaty.eglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfs 270
                     s+f+ ++ s +    +e+ + g   h+d+hn+ g+l ++ t  + +++ +p krpf+ltRs++aGsqr++a+W+Gdn  +We++   ++++l+ +
      CDO72614.1 543 SIFNGPEISmP----RENIHYGGweHRDLHNINGMLFHNLTSqAVMERSNPPKRPFVLTRSFYAGSQRFGAMWTGDNLGTWEHMGVGVKMVLANN 633
                     *9987775544....33446666899*************999345555566******************************************** PP

                     TTT--SEEEECT-SG.HCHHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH CS
                     xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 271 lsGvpfwgaDigGFe.ntteelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplfle 364
                     ++G++f g+D+gGF+ n+++e+++RW+ +Gaf Pffr H++ d+kr+ep++++e++++++r++++lRy++lP++Yt+f+ea+ tglpv+rp ++ 
      CDO72614.1 634 IAGFSFAGSDVGGFFgNPEPEMLVRWYGVGAFAPFFRAHAHIDTKRREPYLLDEPYKSIVRDILRLRYSMLPVWYTAFREASVTGLPVLRPHYVA 728
                     ***************9******************************************************************************* PP

                     -TT-CCCCC--S-EEETTT.EEE----STT-SEEEEEE-.SSEEEETTT--EEES...SEEEEEE--TTSS-EEEETTEEE CS
                     xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 365 fpedektfdiddqfmfGds.LLvaPvleeeatsvevyLP.ggkWydfwtgekyeg...gqtveltapldeiplfvraGaIi 440
                      p+de  f+iddq+++G+s LLv+Pv+++  t+ +vyLP ++ +yd+++++ y+g   g++v++ a+l++ipl++r+G+I+
      CDO72614.1 729 MPHDEGGFAIDDQYFIGSSgLLVKPVTHKSVTEETVYLPeDQVYYDYFSHQAYRGaakGKNVTVPAELHQIPLLIRGGSIV 809
                     *****************999*******9999********777*************864335566666889**********7 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.3   3.7e-23   2.2e-19       3      66 .]     257     331 ..     255     331 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.7e-23
                      EEEEEES-SS-SS-TTE.........EEEE-----TS-HCC.CTS-SCEEEEEEEE..TCEEEEEE--SSSEEEE CS
  Gal_mutarotas_2   3 hvyGlGEkagplnlrgt.........ryrlwntdafgyeaessdplYgsiPfmisl..segyGvfvdnpaetwfD 66 
                      hvyG++++a++l+l +t         +yrl+n d+f+y a+s+++lYgsiPfm ++  ++++G+f +  +etw+D
       CDO72614.1 257 HVYGIPQHATRLSLPTTtgegayysdPYRLYNADVFEYLADSTMSLYGSIPFMQAHsaDSTVGIFNVIGSETWID 331
                      9*********************************************************667*************9 PP

>> DUF5110  Domain of unknown function (DUF5110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.3e-09   1.4e-05       2      50 ..     827     878 ..     826     889 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.3e-09
                 CEEEEE..--TTSEEEEEEE-SSSSCCCCTBEEEEEEEEEC.-STTCEEEEE CS
     DUF5110   2 Ltldvy..gggegsftlYeDDGetydYekGeyaktkftvea.dggkltltig 50 
                  tl+v   ++g+++ +lY DDGety +++G + + +f +++ ++++  + i+
  CDO72614.1 827 FTLRVAldKDGNARGELYLDDGETYSHREGNFIWREFAAQKlTKKSKGVRIS 878
                 5999999888899999**********************99974455445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6496.17
//
Query:       CDO72615.1  [L=253]
Description: hypothetical protein BN946_scf184985.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1735.18
//
Query:       CDO72616.1  [L=415]
Description: hypothetical protein BN946_scf184985.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2802.83
//
Query:       CDO72617.1  [L=823]
Description: hypothetical protein BN946_scf184985.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-53  179.9   0.0    8.9e-53  179.0   0.0    1.5  1  Helicase_C_2  Helicase C-terminal domain
    9.8e-40  136.0   0.1    9.2e-37  126.3   0.1    2.6  1  DEAD_2        DEAD_2
     0.0059   16.4   0.1      0.041   13.6   0.0    2.3  3  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.022   14.3   0.4      0.056   13.0   0.4    1.7  1  AAA_25        AAA domain
      0.034   13.6   0.0       0.28   10.6   0.0    2.1  2  PhoH          PhoH-like protein
      0.042   13.9   0.0        1.6    8.7   0.0    2.4  2  ResIII        Type III restriction enzyme, res subunit
       0.18   11.2   0.3       0.31   10.4   0.3    1.3  1  ThrE          Putative threonine/serine exporter


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.0   3.5e-56   8.9e-53       1     169 [.     595     794 ..     595     796 .. 0.93

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 3.5e-56
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeel....eskkieifvee.keesrekvleeyke.....k.....kkkgaillavcrGklsEGidfsd 82 
                   l +l+++vpgg++vf+pSy++l+ v++ + +++     + k+++f e+ ++++ e vl++y +     +     k++ga+l+av+++klsEG++f+d
    CDO72617.1 595 LFNLSNIVPGGMVVFVPSYSFLHAVMKLWGSSGlldkLNAKKKVFSEPqSSNEVEGVLRDYATeiqatDepgqkKRRGALLFAVVGAKLSEGLNFAD 691
                   57899**************************885665667779999997888**********977665156678*********************** PP

  Helicase_C_2  83 dllraviivglPfpnpkdpeveakreyldekgk................knsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeirek 163
                   dl+ravii+glPf+n+ +pe++++++y+ + ++                k++g e+y++++++avnQ+iGR+iRh++D++a++l+D R+a+++ir+k
    CDO72617.1 692 DLARAVIIIGLPFANLGSPELRERMDYVVRMEQrrlaanpsttaggrnaKDAGTELYENMCMNAVNQSIGRAIRHREDWAALILVDGRYASARIRRK 788
                   ****************************9988889*************9999********************************************* PP

  Helicase_C_2 164 lpkwlr 169
                   lpkw +
    CDO72617.1 789 LPKWTE 794
                   ****87 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.1   3.6e-40   9.2e-37       1     157 [.     199     386 ..     199     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 3.6e-40
                 EEESSHHHHHHHHHHHHHHHHHCH...............H....................HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHC CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykk...............k....................kekvkvviLgSRknlCineevkkekkekavneaCkelkk 64 
                 y+sRThsql+qv++el+kl+ +k                +                        ++v+LgSRk+lCine v++  k  +++eaC+++  
  CDO72617.1 199 YASRTHSQLAQVLHELEKLH-IKLnisvaaleksstttpNpkkrtashleedgssmndeqACGPRAVSLGSRKQLCINEYVRE--KAGDLDEACRQMLG 294
                 9*****************95.55446667776666655505566677777788888865445579****************99..56899********9 PP

                 CHHCCHTTTTTT-SCC...CCHHHHHHHHHHC---CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCC CS
      DEAD_2  65 kkaeekeekCsffenl...eelkklkkllleevvdiedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAh 157
                 +k ++   +C++  +     ++ +l++++l+ + die+l+ +g+   +CPY+ +r+++++a++++lpY++Ll++ +re+l  i+l+n+ivi+DEAh
  CDO72617.1 295 EKGKK---RCPHLPAAeeeMKMLDLRDQILAVPKDIEELYLTGQAADTCPYFGARRAIPQAQLVLLPYNLLLQRTAREALG-IDLENQIVIIDEAH 386
                 99876...99998777422444455*******************************************************6.************** PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.6e-05     0.041       2      82 ..      21     229 ..      20     273 .. 0.83
   2 ?   -0.8   0.0      0.43   1.1e+03     123     132 ..     378     387 ..     343     403 .. 0.86
   3 ?   -2.9   0.0         2   5.1e+03      85     120 ..     448     486 ..     416     490 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHH....TTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS.............................................. CS
                 xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx.............................................. RF
        DEAD   2 diQaeaiplil....gggdvlvaaeTGsGKTlaflipvlqivyet...kgktg.............................................. 47 
                 diQ+  + +++    + +  + + +TG+GKTl  l + l ++ ++       +                                              
  CDO72617.1  21 DIQRDLMRHVYacieDRKVAITESPTGTGKTLSLLCASLTWLRDEqvrA---Rkgklsvreddadapdwvvaqtmerrkreleaedleyaerlaaarkr 116
                 56666666665555366788899****************9996655541...14457788888899999999999999999999999999999999999 PP

                 ..............................................................................-EEEEEESSHHHHHHHHHHHH CS
                 ..............................................................................xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  48 ..............................................................................pkalivePtreLaeqtlnnlk 68 
                                                                                               +k+++ + t++   q+l++l+
  CDO72617.1 117 eaqlrrvmrghvrkrqkvaaeaegpsqdlgdaedetflpeseensetgcnlspavlalmkklqgnlsaspeeekeptcTKIFYASRTHSQLAQVLHELE 215
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 HHTTTSTSEEEEEE CS
                 xxxxxxxxxxxxxx RF
        DEAD  69 kfkkyidlrvllii 82 
                 k+  +++++v ++ 
  CDO72617.1 216 KLHIKLNISVAALE 229
                 99998776666443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.43
                 EEEEEETHHH CS
                 xxxxxxxxxx RF
        DEAD 123 rflVlDEadr 132
                 +++++DEa+ 
  CDO72617.1 378 QIVIIDEAHS 387
                 589*****96 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
                 SSHHHHHHHHHTT.CSEEEEEHHHHHHHH..HCTSSHCT CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxx RF
        DEAD  85 vaardqlskldng.vdivvgtpgrlddll..stgklnls 120
                  +ar ++++ +++ +d+ v+t  +l++ l  +t+ +nl 
  CDO72617.1 448 RDARVKVEAGKSRpPDVEVMTSAKLLQRLgrKTEGINLL 486
                 233333333333379999999999998666666667765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   2.2e-05     0.056      29     131 ..      33     125 ..      22     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
      AAA_25  29 llpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtllt 127
                 ++   ++a+   ++gtGKt  +l  +l++++++++      + +k  + + Ed++ + + ++ a+  + r++++l + dl+     +L+a+++++++l 
  CDO72617.1  33 CIEDRKVAITESPTGTGKTLSLLCASLTWLRDEQV------RARKGKLSVREDDA-DAPDWVVAQTME-RRKRELEAEDLEYA--ERLAAARKREAQLR 121
                 67788999***********************9954......7889999999****.666666655544.34677777777554..56777666666654 PP

      AAA_25 128 advd 131
                 ++++
  CDO72617.1 122 RVMR 125
                 4443 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.28      11      50 ..      29      68 ..      23      70 .. 0.89
   2 ?   -0.1   0.0       0.2   5.2e+02     115     129 ..     372     386 ..     366     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                HHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S CS
        PhoH 11 eylealkkndivfaiGpaGtGKtylavalavealkkkkvk 50
                +++  +++ ++ +   p+GtGKt+  +++ ++ l++++v+
  CDO72617.1 29 HVYACIEDRKVAITESPTGTGKTLSLLCASLTWLRDEQVR 68
                56778999****************9999999999999885 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.2
                 T--B-SEEEEE-SGG CS
        PhoH 115 GrTlndafvilDEAQ 129
                 G  l++ +vi+DEA 
  CDO72617.1 372 GIDLENQIVIIDEAH 386
                 66799********95 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00062       1.6       4      46 ..      19      61 ..      16      77 .. 0.78
   2 ?    2.5   0.0     0.052   1.3e+02     131     142 ..     375     386 ..     328     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00062
                E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH..HHHHH CS
      ResIII  4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva..aklie 46
                +++ Q + ++ + + +  +++k ++ + +TGtGKTl +  a+l++
  CDO72617.1 19 PYDIQRDLMRHVYACI--EDRKVAITESPTGTGKTLSLlcASLTW 61
                6678888888898888..59999999*********8663355555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.052
                 TT-SEEEEETGG CS
      ResIII 131 drfdviiiDEaH 142
                  +++++iiDEaH
  CDO72617.1 375 LENQIVIIDEAH 386
                 34569******* PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00012      0.31     149     205 ..     564     619 ..     552     624 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
        ThrE 149 llakrglnsfvleavaaflasllallavslglglnpdaiiigsillLvPGlpltnav 205
                 + ++ +  +++ e+v a+ a +la  ++s  +  n+++i+ g+++++vP ++++ av
  CDO72617.1 564 KYQHLNPATYFHEVVEAARAVILAGGTMS-PILFNLSNIVPGGMVVFVPSYSFLHAV 619
                 5556666789999***********99999.47899*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 5220.71
//
Query:       CDO72618.1  [L=327]
Description: hypothetical protein BN946_scf184985.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-48  162.0   0.1    2.2e-16   59.5   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.053   13.7   0.5         14    5.9   0.0    2.7  2  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.5e-20   2.2e-16       2      93 ..       4      96 ..       3     100 .. 0.89
   2 !   42.5   0.0   4.9e-15   4.4e-11       5      82 ..     126     220 ..     124     232 .. 0.77
   3 !   56.4   0.2   2.3e-19   2.1e-15       4      85 ..     246     324 ..     244     327 .] 0.94

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.5e-20
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTT.TSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskk.sksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                +l++l++ l+G+l+ a+a ++ +Pld+v trlqt +++s+  ++ ++il vl++++++eGl+gly Gl +    + ++++l+f +y  l+ ++
  CDO72618.1  4 SLPPLAQALSGALGSATANSISYPLDLVATRLQTTSSRSNRlRGLRGILYVLRHVLRTEGLAGLYDGLAADTASTLISNFLYFYFYTLLHAVV 96
                5788999***************************8887655044444***************************************9887765 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 4.9e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...............CCCSSTTTSCSS.............HHHHHHHHHHHHHHHGGGTTHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqt...............qkksskksksaa.............ildvlkkiykeeGlrglyrGllpnllrv 75 
                 v  el++G lag+++  + tPl vv +rlqt               +          +             + +v+++iy ++Gl+g + G+ p+l   
  CDO72618.1 126 VPTELAVGFLAGVASRAMSTPLSVVTVRLQTwendedadssddeenD----------PmtsrsrplkkspqFSEVIQNIYANQGLSGSWAGFKPTLPLC 214
                 67899**************************9988877666555551..........13344445555677***********************98665 PP

                 HHHHHHH CS
   Mito_carr  76 apasalk 82 
                   + al+
  CDO72618.1 215 L-TPALT 220
                 5.55555 PP

  == domain 3  score: 56.4 bits;  conditional E-value: 2.3e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvl 85 
                 s+l+ +l+G++a a+a+ +++Pl ++K+r+q+++k +  s    + dv  + + eeG rgly+Gl+++l++ ++++++++++
  CDO72618.1 246 SALSAFLSGATANALAVACVYPLLLAKVRVQAARKGGDVSS---MTDVWLRAINEEGWRGLYQGLVAQLVKGFVNQGVTMLV 324
                 57889*******************************99876...*********************************99876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0023        21      29      46 ..      52      69 ..      49      73 .. 0.90
   2 ?    5.9   0.0    0.0016        14      31      46 ..     290     305 ..     285     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0023
      HTH_28 29 vyrWikryeegGiagLvp 46
                +y++++ ++++G+agL++
  CDO72618.1 52 LYVLRHVLRTEGLAGLYD 69
                89**************98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0016
      HTH_28  31 rWikryeegGiagLvp 46 
                 +W+++ +e+G+ gL++
  CDO72618.1 290 VWLRAINEEGWRGLYQ 305
                 8*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2201.16
//
Query:       CDO72619.1  [L=323]
Description: hypothetical protein BN946_scf184985.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-50  170.5   3.7    2.5e-49  167.6   3.7    2.0  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
    8.1e-22   77.7   0.0    2.4e-21   76.1   0.0    1.9  1  3HCDH          3-hydroxyacyl-CoA dehydrogenase, C-terminal do
      0.006   16.8   0.3      0.015   15.5   0.3    1.7  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   3.7   4.1e-53   2.5e-49       2     175 ..      10     197 ..       9     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 4.1e-53
                 EEEE--SCCHHHHHHHHHHT.T-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasa.gleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfae 99 
                 ++viGaG+mG gia v a + +++V l d s ++++++l+ + k l+k v+kgk+++e +++a +r+ + +dl++++d+d+v+Eav Enl+lK+++f+ 
  CDO72619.1  10 LGVIGAGQMGLGIAFVSAVHaKVPVLLHDKSVAQIKSGLSLMDKLLSKDVSKGKITQEAAKEARDRVAVVDDLKKFRDVDMVVEAVSENLALKQAIFRS 108
                 69**************99776****************************************************************************** PP

                 HHCCS-TTSEEEE--SSS-HHHHCCCS.............SSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEE CS
     3HCDH_N 100 lekiakpdailasnTSslsiselaeal.............krperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpv 175
                 l++ ++p++ila+nTSs+si+++a+++             ++p+rv+glHFfnP+p+mkLvE++++ +Ts+et+++++++a++ gk +v
  CDO72619.1 109 LSADLSPKTILATNTSSISITKIAASTipegktasdpegqASPSRVVGLHFFNPVPVMKLVELIAAVQTSKETLERARAFATACGKGAV 197
                 ***********************9876443332322222245678*****************************************998 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   4.1e-25   2.4e-21       1      97 []     226     320 ..     226     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 4.1e-25
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHH.....HHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSS CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfel.....ldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgf 94 
                 GFv+n +l+p+ln       egva+  diD++++lg+++pmGp++l     +d +gld++++i ++l+ ++g+++y+ps lle++v+a+ lg+k+gkgf
  CDO72619.1 226 GFVANALLMPFLN-------EGVATRDDIDKTFKLGMNHPMGPLQLvylftADFIGLDTCLAIQQTLYTGTGDSKYRPSVLLERMVDAQWLGKKSGKGF 317
                 8999999999877.......589**********************84444469********************************************** PP

                 SBC CS
       3HCDH  95 yky 97 
                 y+y
  CDO72619.1 318 YDY 320
                 *99 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   2.5e-06     0.015       2      88 ..      10     107 ..       9     136 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.5e-06
                    EEEE--SHHHHHHHHHH.HHTT-EEEEE-SSHHHHHHHHHTT.......EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnl.lkagykvavynrtkekveelvaeg.......akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdil 86 
                    +g+iG G+MG  +a    ++a+  v +++ + +++++ ++         ++  +  +e+++++    +v+  +k+ ++vd v+e + e+l+  + +
     CDO72619.1  10 LGVIGAGQMGLGIAFVSaVHAKVPVLLHDKSVAQIKSGLSLMdkllskdVSKGKITQEAAKEArdrVAVVDDLKKFRDVDMVVEAVSENLALKQAI 105
                    7************976537999*******9997766544433344555566666666666666532233334666667777777766666544444 PP

                    EE CS
  NAD_binding_2  87 id 88 
                      
     CDO72619.1 106 FR 107
                    33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2237.37
//
Query:       CDO72620.1  [L=128]
Description: hypothetical protein BN946_scf184985.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 963.67
//
Query:       CDO72621.1  [L=142]
Description: hypothetical protein BN946_scf184985.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-16   59.9   0.0    2.3e-16   59.7   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   1.3e-20   2.3e-16     171     255 ..       8      90 ..       1      91 [. 0.85

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 1.3e-20
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHHHHHHH CS
  polyprenyl_synt 171 eelealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkkaekeedvkealel 255
                      ++  ++  +++ +G++FQi+DDy++l +++++ +K +++D++egk+++pi++  + a+ ++r ++ ++l+k+++++  +k+++++
       CDO72621.1   8 NTDVDYVPLVNLFGVYFQIRDDYMNLQSTQYTDNKGFAEDVTEGKFSFPIVHGTR-ADTSNR-QILNVLQKRPTTPTLKKHMIAY 90 
                      3336788999*********************************************.777767.8999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1169.99
//
Query:       CDO72622.1  [L=2553]
Description: hypothetical protein BN946_scf184985.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-84  283.8   0.2    2.2e-84  283.8   0.2    4.4  5  Gcn1_N         Generalcontrol nonderepressible 1 (Gcn1) N-ter
    8.4e-35  115.8  33.0      0.077   13.3   0.0   22.2 22  HEAT           HEAT repeat
    1.4e-32  111.6  25.5    0.00038   20.9   0.1   16.7 16  HEAT_EZ        HEAT-like repeat
    7.6e-25   87.1  32.4    4.7e-05   23.7   0.1   13.8 16  HEAT_2         HEAT repeats
    3.1e-13   50.1   0.0       0.55   10.3   0.0    9.7 10  Cnd1           non-SMC mitotic condensation complex subunit 1
    3.8e-10   39.7   0.0     0.0089   15.6   0.0    6.2  7  CLASP_N        CLASP N terminal
    2.1e-08   33.6   9.1       0.22   10.6   0.0    7.3  7  IFRD           Interferon-related developmental regulator (IF
    1.5e-06   27.1   2.3       0.23   10.0   0.1    7.0  7  Adaptin_N      Adaptin N terminal region
      4e-06   26.6   0.1       0.28   10.7   0.0    5.3  5  Tti2           Tti2 family
    2.8e-05   23.0   1.2        2.5    6.7   0.0    5.7  7  Ecm29          Proteasome stabiliser
     0.0001   22.8   0.0         20    5.9   0.0    6.5  7  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    0.00065   19.9   0.4          4    7.9   0.0    4.3  4  Cohesin_HEAT   HEAT repeat associated with sister chromatid c
     0.0027   17.7   0.0      0.032   14.2   0.0    3.0  1  UNC45-central  Myosin-binding striated muscle assembly centra
     0.0051   16.7   3.9        3.8    7.5   0.0    6.0  7  DUF3437        Domain of unknown function (DUF3437)
  ------ inclusion threshold ------
      0.014   15.1   0.3         24    4.5   0.1    4.6  4  NUC173         NUC173 domain
      0.052   14.1   0.7         15    6.2   0.1    5.1  5  Ipi1_N         Rix1 complex component involved in 60S ribosom
       0.14   12.2   6.4        6.2    7.0   0.0    5.8  4  Arm            Armadillo/beta-catenin-like repeat
        3.9    6.5  21.5         14    4.7   0.1    7.6 10  MMS19_C        RNAPII transcription regulator C-terminal


Domain annotation for each model (and alignments):
>> Gcn1_N  Generalcontrol nonderepressible 1 (Gcn1) N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   0.2   2.2e-87   2.2e-84       1     333 [.     415     741 ..     415     743 .. 0.94
   2 ?   -3.3   0.0       4.1     4e+03      72     115 ..    1818    1862 ..    1811    1870 .. 0.75
   3 ?    0.7   0.1      0.26   2.6e+02     228     304 ..    1884    1970 ..    1879    1991 .. 0.80
   4 ?   -1.8   0.1       1.4   1.4e+03     245     304 ..    2093    2149 ..    2059    2172 .. 0.70
   5 ?   -0.0   0.2      0.42   4.2e+02       9     120 ..    2335    2440 ..    2326    2460 .. 0.68

  Alignments for each domain:
  == domain 1  score: 283.8 bits;  conditional E-value: 2.2e-87
      Gcn1_N   1 adhRvllaemLsalppsesvsskileglapllaKEtnEaalaaevsalakhltfllksgvevpkkvvdaivkGladkKppvRrlwalrvGevlwnleee 99 
                 +dhRv l++mL a++ps+ vss+ l+  +pllaKEt++aa+++++ +l++hl++ l+s+++vp++ ++ i+k++++ Kp  Rr+++  vG+++w+le+ 
  CDO72622.1 415 PDHRVGLYSMLGAVRPSQPVSSTTLQIGLPLLAKETHDAAVTVLAGSLTPHLAWSLRSNSPVPSDSAALIAKEMNSSKPLARRAFCSMVGNAFWQLEK- 512
                 8************************************************************************************************6. PP

      Gcn1_N 100 llsssvaaskfaeavlpkLektlkevvanPlpaaqsglvseayvvlalllgrlsssgsskvesllkkasivkqllalepKpsfLlnpkvYsKltseedl 198
                    +s a+ +fa+av+p+Le++lk+v+anP++a++++   eay+++a+llg+ls+s+  +++++++ ++++++++a ++KpsfLl++kvY+Kl+ e+++
  CDO72622.1 513 --VESPASIAFAKAVMPSLETNLKTVAANPVTAPAGPV--EAYIATAILLGPLSRSK--QFDEVITGNATIQSITAAGSKPSFLLWDKVYQKLSGEDEE 605
                 ..3444458*****************************..**************997..99************************************** PP

      Gcn1_N 199 kWllRAlaavasalkeess.eeaaktawaqafiylivsssvspevRrealealsklyaanpelvskviiealwswlesleeae.kdsaavlaktenen. 294
                  WllRA++av++++k+e   +e+++++ ++ f++l+++  +sp++Rr+al +l+kl+aa+pel++   i a++ +++++++   k +aa+  +te+++ 
  CDO72622.1 606 LWLLRAVEAVLPFFKDEFLrNEQSRISAGSIFLHLAMDG-SSPTIRRSALATLEKLAAAQPELIGLSTIAAITTYFSKVQTTHlKTTAANGEETEARSn 703
                 *****************999*******************.9*************************************944441444444444444448 PP

      Gcn1_N 295 ....LslvlkaiclspaeklgkdvdeevlekqlvellVlarhe 333
                     Ls+v+ a+ +     +g+++ ++v+e++l++++ +a+++
  CDO72622.1 704 ketrLSAVILACGA-----FGAQCPQDVKERLLMDFVLVAHQP 741
                 9999**********.....**********************85 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.1
      Gcn1_N   72 kGladkKppvRrlwalrvGevlwnleee.llsssvaaskfaeavl 115 
                   G+ d    +R + ++ vGe+l++++    + + +++++ +e+v+
  CDO72622.1 1818 RGMFDPGWRIRQASITLVGELLFKVSGIsGKAEIEEEEEIVETVV 1862
                  66777777899*************998764444444566666665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.26
      Gcn1_N  228 afiylivsssvspevRrealealsklyaanpelvskviiealwswlesleeaekdsaavlaktenen...........Lslvlkaicl 304 
                  a +yl+ +  + + vR++ +++ ++l+ + p +v +++ e + ++++ l ++e d+++++a+t +e            L +vl++++ 
  CDO72622.1 1884 AALYLARQD-SVNVVRQASIHIWKALVHNTPRTVREILPELMEQIILLLTSDEVDQQETAARTVTELcrksgekmlsdLVAVLRTMSG 1970
                  678888888.77889**********************999999999988888888888888777776777888887777777777665 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.4
      Gcn1_N  245 ealealsklyaanpelvskviiealwswlesleeaekdsaavlaktenenLslvlkaicl 304 
                   al +l +++ +  ++  +v+++al ++ e+  + +kd+  +l++  +e ++++++++c 
  CDO72622.1 2093 RALASLMTVAGSALSKRLNVVLSALVKVHEDP-TTTKDE--ELKSAIEEAIHALMRSVCD 2149
                  45566666666666666677777777777766.333333..3333445557777777775 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.42
      Gcn1_N    9 emLsalppsesvsskileglapllaKEtnEaalaaevsalakhltfllksgvevpkkvvdaivkGladkKppvRrlwalrvGevlwnleee.llsss 104 
                  +mL+ +p      +    +l  ++ K +++ a  a  s  a++l +l+k++    ++vv+++  G  +   ++   ++l+++ v+ ++ ++   ++ 
  CDO72622.1 2335 TMLERIPA---FVKPFFPQLQRVFVKSASDPASLAVRSNAAHALGVLMKNQPR-VDPVVTELLTGARSNEDAIAASLLLALARVVRSAGSNvGDKA- 2426
                  45555553...566667778888889999998888888888888888888755.468888888888888888888888888888888875422222. PP

      Gcn1_N  105 vaaskfaeavlpkLek 120 
                     +++a+ +++ +++
  CDO72622.1 2427 --REACADLIIETFKE 2440
                  ..23444444444444 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.34   3.4e+02       6      28 ..     365     387 ..     360     389 .. 0.80
   2 ?    4.3   0.0     0.062        62       4      28 ..     636     661 ..     635     663 .. 0.88
   3 !    7.3   0.2    0.0066       6.6       5      26 ..    1158    1179 ..    1154    1181 .. 0.87
   4 ?   -2.2   0.0       7.2   7.1e+03       8      18 ..    1262    1272 ..    1258    1278 .. 0.84
   5 ?    0.9   0.0      0.72   7.2e+02       1      30 [.    1339    1368 ..    1339    1369 .. 0.87
   6 ?    2.5   0.0      0.22   2.2e+02       6      30 ..    1382    1406 ..    1376    1407 .. 0.86
   7 !    6.8   0.0    0.0092       9.1       1      20 [.    1459    1478 ..    1459    1481 .. 0.94
   8 ?    0.8   0.0      0.78   7.8e+02       1      29 [.    1497    1525 ..    1497    1527 .. 0.92
   9 !   11.4   0.0   0.00032      0.32       1      30 [.    1538    1567 ..    1538    1568 .. 0.93
  10 ?    1.5   0.0      0.49   4.9e+02       1      29 [.    1614    1642 ..    1614    1644 .. 0.94
  11 !   13.3   0.0   7.7e-05     0.077       9      30 ..    1664    1685 ..    1656    1686 .. 0.82
  12 ?   -1.5   0.0       4.3   4.3e+03       1      18 [.    1733    1750 ..    1733    1751 .. 0.93
  13 !   12.6   0.0   0.00013      0.13       1      23 [.    1774    1796 ..    1774    1804 .. 0.87
  14 ?    5.0   0.0     0.037        37       1      28 [.    1812    1839 ..    1812    1842 .. 0.93
  15 ?   -2.3   0.0       8.1     8e+03      10      22 ..    1891    1903 ..    1884    1910 .. 0.80
  16 ?    4.6   0.0     0.049        49       1      29 [.    1923    1951 ..    1923    1953 .. 0.91
  17 ?    3.4   0.0      0.12   1.2e+02       4      29 ..    1964    1989 ..    1961    1991 .. 0.87
  18 !   10.1   0.1   0.00079      0.79       2      30 ..    2004    2032 ..    2003    2033 .. 0.85
  19 ?    2.6   0.1       0.2     2e+02       4      29 ..    2159    2184 ..    2156    2186 .. 0.90
  20 ?    3.0   0.1      0.16   1.6e+02       4      30 ..    2200    2226 ..    2198    2227 .. 0.89
  21 !   10.2   0.0   0.00078      0.78       2      29 ..    2266    2293 ..    2265    2295 .. 0.93
  22 !   10.6   0.1   0.00057      0.56       3      30 ..    2353    2381 ..    2351    2382 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.34
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 l+  ++++p VR +A+  +  l+
  CDO72622.1 365 LNSAKSTNPIVRINAVTLFKVLV 387
                 455689**********9998776 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.062
                 HHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsD.pspeVReaAakaLgala 28 
                 ++l+l +D +sp +R++A+ +L +la
  CDO72622.1 636 IFLHLAMDgSSPTIRRSALATLEKLA 661
                 57888899899***********9997 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0066
                  HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLga 26  
                  ll  l+++++ VR+ Aa aL++
  CDO72622.1 1158 LLAFLEHENAYVRSCAASALAD 1179
                  78889**************985 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 7.2
                  HHT-SSHHHHH CS
        HEAT    8 llsDpspeVRe 18  
                  +l D +p+VR+
  CDO72622.1 1262 ALGDRHPDVRR 1272
                  689*******7 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.72
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  ++  l+ +l+ p+ +V +a+  +L  l+++
  CDO72622.1 1339 IVERLVGALKTPAEQVQMAVSDCLSPLVQI 1368
                  56778999999*************999875 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.22
                  HHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    6 lkllsDpspeVReaAakaLgalaev 30  
                   +l+++ps   R+ Aa+ L+ ++++
  CDO72622.1 1382 DELCNSPSYAARRGAAYGLAGVVKG 1406
                  6899***************999887 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0092
                  HHHHHHHHHT-SSHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaA 20  
                  +lPlll+   D  p+VRea+
  CDO72622.1 1459 VLPLLLNSFGDGVPDVREAT 1478
                  69****************95 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.78
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  +lP ll+ l  + ++  + +++ Lg +a 
  CDO72622.1 1497 VLPSLLSGLDEKQWRTKKGSIELLGMMAY 1525
                  69***********************9985 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 0.00032
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  ++P l   l+D++++VR+aA k+L ++ ev
  CDO72622.1 1538 VIPRLTGVLTDSHAQVRAAANKSLKQFGEV 1567
                  589999********************9987 PP

  == domain 10  score: 1.5 bits;  conditional E-value: 0.49
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  ++P++ + l+  s++  + Aa+ +g+la+
  CDO72622.1 1614 VIPIIERGLRERSADTKKKAAQIVGNLAS 1642
                  589************************97 PP

  == domain 11  score: 13.3 bits;  conditional E-value: 7.7e-05
                  HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    9 lsDpspeVReaAakaLgalaev 30  
                  l Dp pe R++AakaLg+l+e 
  CDO72622.1 1664 LADPVPEARATAAKALGTLVER 1685
                  79*****************985 PP

  == domain 12  score: -1.5 bits;  conditional E-value: 4.3
                  HHHHHHHHHT-SSHHHHH CS
        HEAT    1 llPlllkllsDpspeVRe 18  
                  llP ++ + ++p + VRe
  CDO72622.1 1733 LLPDIIANAQSPRSTVRE 1750
                  799999***********7 PP

  == domain 13  score: 12.6 bits;  conditional E-value: 0.00013
                  HHHHHHHHHT-SSHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAaka 23  
                  ++P++l+ lsD++  VReaA +a
  CDO72622.1 1774 IIPPILSGLSDSEDYVREAAMRA 1796
                  79******************987 PP

  == domain 14  score: 5.0 bits;  conditional E-value: 0.037
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  llP l + + Dp +++R+a++  +g+l+
  CDO72622.1 1812 LLPELERGMFDPGWRIRQASITLVGELL 1839
                  7999*********************997 PP

  == domain 15  score: -2.3 bits;  conditional E-value: 8.1
                  T-SSHHHHHHHHH CS
        HEAT   10 sDpspeVReaAak 22  
                  +D+   VR+a++ 
  CDO72622.1 1891 QDSVNVVRQASIH 1903
                  89999*****975 PP

  == domain 16  score: 4.6 bits;  conditional E-value: 0.049
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  l+  ++ ll++++ ++ e+Aa+++++l++
  CDO72622.1 1923 LMEQIILLLTSDEVDQQETAARTVTELCR 1951
                  78899999*999999************97 PP

  == domain 17  score: 3.4 bits;  conditional E-value: 0.12
                  HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgalae 29  
                  +l ++  + +p+ Re ++++L++l++
  CDO72622.1 1964 VLRTMSGSADPRKREGVCLTLCELMQ 1989
                  67788899****************98 PP

  == domain 18  score: 10.1 bits;  conditional E-value: 0.00079
                  HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgalaev 30  
                  + ++   l D++++VR+aAaka+  l e+
  CDO72622.1 2004 ISMVRASLVDDEANVRAAAAKAFDVLQEY 2032
                  667778899**************999876 PP

  == domain 19  score: 2.6 bits;  conditional E-value: 0.2
                  HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgalae 29  
                  lll + +++s + R +A++ ++ ++e
  CDO72622.1 2159 LLLGWAKHESVKRRVSACELFAIFCE 2184
                  79999****************99997 PP

  == domain 20  score: 3.0 bits;  conditional E-value: 0.16
                  HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    4 lllkllsDpspeVReaAakaLgalaev 30  
                   l++ll D + +V  aA +aL  +++ 
  CDO72622.1 2200 QLVSLLDDREVSVHTAAWNALDVFVKS 2226
                  6899*****************999875 PP

  == domain 21  score: 10.2 bits;  conditional E-value: 0.00078
                  HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgalae 29  
                  +P+++  l+  s e+Re Aa+a+g+l+e
  CDO72622.1 2266 VPIIIAGLTTGSNEQREQAAYAIGDLVE 2293
                  7999999999****************98 PP

  == domain 22  score: 10.6 bits;  conditional E-value: 0.00057
                  HHHHHHHT-SSHH.HHHHHHHHHHHHHHC CS
        HEAT    3 PlllkllsDpspe.VReaAakaLgalaev 30  
                   +++k  sDp++  VR++Aa aLg l+++
  CDO72622.1 2353 RVFVKSASDPASLaVRSNAAHALGVLMKN 2381
                  5789999**88888************986 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.8   2.8e+03      42      55 .]     647     660 ..     638     672 .. 0.62
   2 ?    2.7   0.0      0.19   1.9e+02      33      53 ..    1158    1178 ..    1149    1179 .. 0.87
   3 ?    0.6   0.0      0.87   8.6e+02       2      54 ..    1269    1324 ..    1268    1325 .. 0.67
   4 ?    4.1   0.1     0.072        71       4      53 ..    1315    1363 ..    1312    1365 .. 0.77
   5 ?    1.7   0.0       0.4   3.9e+02      19      48 ..    1449    1478 ..    1434    1478 .. 0.84
   6 !   20.4   0.0   5.4e-07   0.00054       1      52 [.    1510    1561 ..    1510    1564 .. 0.93
   7 ?   -2.2   0.0       6.5   6.5e+03      24      40 ..    1571    1587 ..    1568    1590 .. 0.72
   8 !   20.9   0.1   3.8e-07   0.00038       3      54 ..    1671    1720 ..    1669    1721 .. 0.90
   9 ?    5.6   0.0     0.024        24       4      31 ..    1711    1739 ..    1711    1756 .. 0.89
  10 !   18.2   0.0   2.7e-06    0.0027      22      51 ..    1767    1796 ..    1746    1796 .. 0.91
  11 ?   -1.7   0.0       4.6   4.6e+03      23      52 ..    1806    1835 ..    1802    1838 .. 0.78
  12 !   11.2   0.0   0.00041      0.41      16      53 ..    1910    1947 ..    1904    1949 .. 0.87
  13 !    8.3   0.1    0.0034       3.4       4      52 ..    1977    2026 ..    1974    2029 .. 0.78
  14 ?   -1.7   0.0       4.5   4.5e+03      30      50 ..    2198    2217 ..    2183    2217 .. 0.84
  15 ?    6.4   0.0     0.013        13      22      53 ..    2262    2289 ..    2255    2291 .. 0.70
  16 !   15.7   0.1   1.6e-05     0.016       3      55 .]    2325    2378 ..    2323    2378 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.8
     HEAT_EZ  42 deVRaaAagaLgnl 55 
                 +++R  A+ +L++l
  CDO72622.1 647 PTIRRSALATLEKL 660
                 34455555555544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.19
     HEAT_EZ   33 LlalLnddsdeVRaaAagaLg 53  
                  Lla+L+++++ VR  Aa aL+
  CDO72622.1 1158 LLAFLEHENAYVRSCAASALA 1178
                  788899*************95 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.87
     HEAT_EZ    2 rvRraAaw.aLGrlaggepellqplvpeilpaLl..alLnddsdeVRaaAagaLgn 54  
                   vRr+ ++ +++ + ++++  l+ l++   ++L+  ++ + +sd +++a+++ +g+
  CDO72622.1 1269 DVRRGMLNcGMAVIDQHGSTRLPELISMFEAELAstSAGTESSDQIKEAVVILFGR 1324
                  6788888888855555555555555555555555666666689999******9998 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.072
     HEAT_EZ    4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53  
                  ++a++  +Gr+a    +   p +p i+  L+ +L+++   V+ a+  +L+
  CDO72622.1 1315 KEAVVILFGRVA-RHLDSSDPRLPSIVERLVGALKTPAEQVQMAVSDCLS 1363
                  566666667655.34444566899*********************99997 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.4
     HEAT_EZ   19 pellqplvpeilpaLlalLnddsdeVRaaA 48  
                  ++l +p++  +lp+Ll+   d  ++VR+a+
  CDO72622.1 1449 GRLFEPYIIHVLPLLLNSFGDGVPDVREAT 1478
                  5778899999*****************996 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 5.4e-07
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  wr + + +  LG +a ++p +l++ +p ++p L   L+d+++ VRaaA   L
  CDO72622.1 1510 WRTKKGSIELLGMMAYCAPKQLSQSLPIVIPRLTGVLTDSHAQVRAAANKSL 1561
                  8999999999**************************************8766 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 6.5
     HEAT_EZ   24 plvpeilpaLlalLndd 40  
                  p+++ ++p +l+++ d+
  CDO72622.1 1571 PEIQSLVPVFLKAMVDP 1587
                  67888888888777665 PP

  == domain 8  score: 20.9 bits;  conditional E-value: 3.8e-07
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaLgn 54  
                   R+ Aa aLG+l     +l +++ p+++p Ll++L++d + V R+ Aa  L+ 
  CDO72622.1 1671 ARATAAKALGTLV---ERLGEGHFPDLVPGLLRTLKTDTSGVdRQGAAQGLSE 1720
                  6999******744...7*******************************99985 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.024
     HEAT_EZ    4 RraAawaLGr.laggepellqplvpeilp 31  
                  R +Aa +L++ lag ++e +++l+p+i++
  CDO72622.1 1711 RQGAAQGLSEvLAGLGMERMEGLLPDIIA 1739
                  889*****99****************997 PP

  == domain 10  score: 18.2 bits;  conditional E-value: 2.7e-06
     HEAT_EZ   22 lqplvpeilpaLlalLnddsdeVRaaAaga 51  
                   qp++p+i+p+ l++L+d++d VR+aA +a
  CDO72622.1 1767 FQPHLPKIIPPILSGLSDSEDYVREAAMRA 1796
                  69*************************997 PP

  == domain 11  score: -1.7 bits;  conditional E-value: 4.6
     HEAT_EZ   23 qplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  +++++ +lp+L +++ d+  ++R+a++   
  CDO72622.1 1806 SKAIDLLLPELERGMFDPGWRIRQASITLV 1835
                  67889999****999999888888877655 PP

  == domain 12  score: 11.2 bits;  conditional E-value: 0.00041
     HEAT_EZ   16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53  
                   + p++++  +pe++ + + lL++d+ + +++Aa++ +
  CDO72622.1 1910 HNTPRTVREILPELMEQIILLLTSDEVDQQETAARTVT 1947
                  67899*****************9999999*****9976 PP

  == domain 13  score: 8.3 bits;  conditional E-value: 0.0034
     HEAT_EZ    4 RraAawaLGr..laggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  R++++++L +  + +  + + +++ ++i+    a L dd+++VRaaAa a+
  CDO72622.1 1977 REGVCLTL-CelMQSTTDTQREGQEDDIISMVRASLVDDEANVRAAAAKAF 2026
                  66666666.55555555556667999**********************986 PP

  == domain 14  score: -1.7 bits;  conditional E-value: 4.5
     HEAT_EZ   30 lpaLlalLnddsdeV.RaaAag 50  
                  +++L++lL  d+ eV   +Aa+
  CDO72622.1 2198 IRQLVSLL--DDREVsVHTAAW 2217
                  789*****..888887777776 PP

  == domain 15  score: 6.4 bits;  conditional E-value: 0.013
     HEAT_EZ   22 lqplvpeilpaLlalLnddsdeVRaaAagaLg 53  
                  ++     ++p  +a+L++ s e R++Aa+a+g
  CDO72622.1 2262 IS----PMVPIIIAGLTTGSNEQREQAAYAIG 2289
                  44....455555666667777**********9 PP

  == domain 16  score: 15.7 bits;  conditional E-value: 1.6e-05
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55  
                  v+ a ++aL ++++  p  ++p+ p++ + +++  +d+ + +VR +Aa+aLg l
  CDO72622.1 2325 VKSAILSALTTMLERIPAFVKPFFPQLQRVFVKSASDPASlAVRSNAAHALGVL 2378
                  5667777**99999************************99999********975 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.3   5.3e+03      38      53 ..     366     381 ..     357     394 .. 0.78
   2 ?   -1.4   0.0       3.1   3.1e+03      10      29 ..     643     662 ..     636     678 .. 0.59
   3 ?    6.1   0.0     0.015        14      33      56 ..    1155    1178 ..    1122    1198 .. 0.81
   4 ?   -2.9   0.0       9.1   9.1e+03      38      49 ..    1261    1272 ..    1259    1278 .. 0.61
   5 !    9.2   0.0    0.0015       1.5      28      84 ..    1335    1397 ..    1306    1401 .. 0.68
   6 ?    4.1   0.0     0.061        61      32      87 ..    1459    1520 ..    1446    1521 .. 0.74
   7 !   16.5   0.0   8.5e-06    0.0085       1      70 [.    1498    1583 ..    1498    1591 .. 0.73
   8 !   23.7   0.1   4.7e-08   4.7e-05      10      87 ..    1623    1718 ..    1615    1719 .. 0.84
   9 !    8.4   0.0    0.0028       2.8      30      83 ..    1772    1831 ..    1754    1838 .. 0.68
  10 ?    1.3   0.4      0.47   4.7e+02      48      84 ..    1867    1902 ..    1859    1906 .. 0.76
  11 ?    0.8   0.1      0.64   6.4e+02      31      73 ..    1922    1967 ..    1892    1985 .. 0.64
  12 !   12.5   0.6   0.00015      0.15      15      86 ..    1940    2025 ..    1924    2027 .. 0.71
  13 !   13.0   1.2   0.00011       0.1       8      74 ..    1968    2052 ..    1959    2068 .. 0.69
  14 ?    1.9   0.1       0.3     3e+02      10      56 ..    2165    2221 ..    2157    2237 .. 0.74
  15 ?   -2.7   0.0       8.2   8.1e+03      34      58 ..    2267    2291 ..    2265    2302 .. 0.56
  16 !   13.6   0.2   6.9e-05     0.069      12      78 ..    2321    2400 ..    2310    2412 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.3
      HEAT_2  38 ellededpavRraaae 53 
                 + +++++p vR +a++
  CDO72622.1 366 NSAKSTNPIVRINAVT 381
                 5567888888888885 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.1
      HEAT_2  10 ndpdpevrraairaLgrign 29 
                 + ++p +rr a+ +L +++ 
  CDO72622.1 643 DGSSPTIRRSALATLEKLAA 662
                 44555566666666654433 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.015
      HEAT_2   33 lpaLvellededpavRraaaeaLg 56  
                  l  L+ +le+e+++vR  aa aL+
  CDO72622.1 1155 LSDLLAFLEHENAYVRSCAASALA 1178
                  667888999999999999999987 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 9.1
      HEAT_2   38 ellededpavRr 49  
                  ++l d +p+vRr
  CDO72622.1 1261 QALGDRHPDVRR 1272
                  455566666665 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0015
      HEAT_2   28 gnpealpaLvellededpavRraaaeaLg....aig..dpealpaLke.llddddddvvReaAa 84  
                  + p++++ Lv +l+++ + v++a+ + L+     ++   +e ++ L + l+++++ + +R a a
  CDO72622.1 1335 RLPSIVERLVGALKTPAEQVQMAVSDCLSplvqIMKtpPSELIDRLMDeLCNSPSYAARRGA-A 1397
                  33599***********************8766433322577787777648888888887765.4 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.061
      HEAT_2   32 alpaLvellededpavRraaaeaLgai.......gdpealpaLkellddddddvvReaAaeaL 87  
                  +lp+L++   d  p+vR+a  +a+  i       g++ +lp+L+  ld+++++  +  ++e L
  CDO72622.1 1459 VLPLLLNSFGDGVPDVREATEDAARVImanmsgyGLKTVLPSLLSGLDEKQWRT-KKGSIELL 1520
                  69999999***********99999533333454489***********8877765.66666655 PP

  == domain 7  score: 16.5 bits;  conditional E-value: 8.5e-06
      HEAT_2    1 ldaLlqalendpdpevrraairaLg.......rignpea.......lpaLvellededpavRraaaeaLgaigd.......pealpaLkel 70  
                  l+ Ll+ l + + + +++  i+ Lg       +    ++       +p L+ +l+d+++ vR+aa ++L ++g+       ++ +p+ +++
  CDO72622.1 1498 LPSLLSGL-DEKQWRTKKGSIELLGmmaycapK----QLsqslpivIPRLTGVLTDSHAQVRAAANKSLKQFGEvisnpeiQSLVPVFLKA 1583
                  57899999.9999************88744441....223344666**************************9544332233345555555 PP

  == domain 8  score: 23.7 bits;  conditional E-value: 4.7e-08
      HEAT_2   10 ndpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLg....aigd...pealpaLkellddddddvvReaAaeaL 87  
                  +  + +++++a++  g++++            ++lp+++ +l d+ p+ R++aa+aLg    ++g+   p+ +p L++ l++d++ v R+ Aa++L
  CDO72622.1 1623 RERSADTKKKAAQIVGNLASLtdskdfvpylsRLLPMVHVVLADPVPEARATAAKALGtlveRLGEghfPDLVPGLLRTLKTDTSGVDRQGAAQGL 1718
                  5567788888888888776655667888888899************************55544565669*************************98 PP

  == domain 9  score: 8.4 bits;  conditional E-value: 0.0028
      HEAT_2   30 pealpaLvellededpavRraaaeaLgai...gdpealpaLkelldd...ddddvvReaA 83  
                  p+++p +++ l+d++ +vR+aa +a   i    +++a+++L+  l +   d+ +++R+a+
  CDO72622.1 1772 PKIIPPILSGLSDSEDYVREAAMRAGRMIvtnYSSKAIDLLLPELERgmfDPGWRIRQAS 1831
                  789999999999999999999998876664433466555544333221115556666655 PP

  == domain 10  score: 1.3 bits;  conditional E-value: 0.47
      HEAT_2   48 RraaaeaLgaigdpealpaLkellddddddvvReaAa 84  
                  R+a +e Lg  ++++ l+aL  l+++d++ vvR+a++
  CDO72622.1 1867 RKALVEVLGVERRDRILAALY-LARQDSVNVVRQASI 1902
                  677777777777777888887.677788888888876 PP

  == domain 11  score: 0.8 bits;  conditional E-value: 0.64
      HEAT_2   31 ealpaLvellededpavRraaaeaLgaigd...pealpaLkelldd 73  
                  e+++ ++ ll++++ + +++aa++  ++ +   ++ l+ L + l++
  CDO72622.1 1922 ELMEQIILLLTSDEVDQQETAARTVTELCRksgEKMLSDLVAVLRT 1967
                  6666777777777777777777777776321224444444444443 PP

  == domain 12  score: 12.5 bits;  conditional E-value: 0.00015
      HEAT_2   15 evrraairaLgrignp....ealpaLvellededpavRraaaeaLgai..........gdpealpaLkellddddddvvReaAaea 86  
                  e++++++ +L r+  +    ++++ L+ +  ++dp+ R+ ++ +L ++          g ++++ +  ++ + dd++ vR+aAa+a
  CDO72622.1 1940 ETAARTVTELCRKSGEkmlsDLVAVLRTMSGSADPRKREGVCLTLCELmqsttdtqreGQEDDIISMVRASLVDDEANVRAAAAKA 2025
                  345555555554333335557788888888999**********997776666666656678888888888889999999**99998 PP

  == domain 13  score: 13.0 bits;  conditional E-value: 0.00011
      HEAT_2    8 lendpdpevrraairaLg....rignp..........ealpaLvellededpavRraaaeaLg....aigd...pealpaLkellddd 74  
                  ++ ++dp  r  ++ +L     +   +          +++ +++  l d++++vR+aaa+a       ig    +e++p L+e+l+++
  CDO72622.1 1968 MSGSADPRKREGVCLTLCelmqS---TtdtqregqedDIISMVRASLVDDEANVRAAAAKAFDvlqeYIGAraiDETIPTLLEALRQP 2052
                  44578888888888888864440...2333455555599********************98842322334334588999999999876 PP

  == domain 14  score: 1.9 bits;  conditional E-value: 0.3
      HEAT_2   10 ndpdpevrraairaLg......rignp....ealpaLvellededpavRraaaeaLg 56  
                  ++++ + r  a++  +      ++++     + ++ Lv+ll+d +  v  aa +aL 
  CDO72622.1 2165 KHESVKRRVSACELFAifceesELDSSlyrvDWIRQLVSLLDDREVSVHTAAWNALD 2221
                  788888888999999955544433333666677999*****************9995 PP

  == domain 15  score: -2.7 bits;  conditional E-value: 8.2
      HEAT_2   34 paLvellededpavRraaaeaLgai 58  
                  p+++  l++ + + R++aa a+g +
  CDO72622.1 2267 PIIIAGLTTGSNEQREQAAYAIGDL 2291
                  4555555555555555555555543 PP

  == domain 16  score: 13.6 bits;  conditional E-value: 6.9e-05
      HEAT_2   12 pdpevrraairaLgrignp..........ealpaLvelleded.pavRraaaeaLgai.g.dpealpaLkellddddddv 78  
                    p v+ a++ aL ++ ++          ++++ +v+ ++d+   avR +aa+aLg + +  p++ p+ +ell+  ++ +
  CDO72622.1 2321 YPPGVKSAILSALTTMLERipafvkpffpQLQRVFVKSASDPAsLAVRSNAAHALGVLmKnQPRVDPVVTELLTGARSNE 2400
                  5677889999999976665556676777799**********76269**********663325999999999998766543 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   1.3e+03      30      93 ..     642     668 ..     631     698 .. 0.62
   2 ?    3.2   0.0      0.08        80      57      84 ..    1152    1179 ..    1137    1206 .. 0.72
   3 !    6.6   0.0    0.0071       7.1      28     148 ..    1261    1387 ..    1258    1401 .. 0.79
   4 ?   -0.6   0.0       1.2   1.2e+03      38     126 ..    1393    1492 ..    1386    1496 .. 0.77
   5 ?    2.2   0.0      0.17   1.7e+02      60     104 ..    1539    1584 ..    1529    1609 .. 0.76
   6 ?    3.2   0.0     0.085        84      23     107 ..    1615    1705 ..    1592    1723 .. 0.80
   7 !   10.3   0.0   0.00055      0.55      15     133 ..    1767    1918 ..    1762    1965 .. 0.71
   8 ?    5.0   0.8     0.023        23      22     154 ..    1882    2020 ..    1877    2026 .. 0.75
   9 ?    5.6   0.1     0.015        15      32     106 ..    1971    2051 ..    1943    2078 .. 0.70
  10 ?    1.6   0.0      0.26   2.5e+02       3     114 ..    2326    2441 ..    2324    2456 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
        Cnd1  30 LkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenai 93 
                 +  ++                                     p+++ +ala l++++  ++++i
  CDO72622.1 642 MDGSS-------------------------------------PTIRRSALATLEKLAAAQPELI 668
                 34445.....................................5555555555555555544444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.08
        Cnd1   57 kgflselaklleDenprVvanalaalte 84  
                  +gfls+l+  le en+ V++ a +al +
  CDO72622.1 1152 EGFLSDLLAFLEHENAYVRSCAASALAD 1179
                  6677777777777777777777777766 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0071
        Cnd1   28 krLkDedpyVRktaaivvakLilnd.mvkekgflselakll......eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqi 117 
                  ++L D++p VR+  + +   +i++    +  +++s+++  l      +++++++ + +++++  +++   +     lp+i+ +l+ al++  e+ q+
  CDO72622.1 1261 QALGDRHPDVRRGMLNCGMAVIDQHgSTRLPELISMFEAELastsagTESSDQIKEAVVILFGRVARHL-DSSDPRLPSIVERLVGALKTPAEQVQM 1356
                  568888888888888888888655424444445555544442222456788999999999999999996.5778889******************** PP

        Cnd1  118 tilefLlsyipkdkqeaeslveklcprlqha 148 
                   + ++L+  ++  k    +l+++l+++l ++
  CDO72622.1 1357 AVSDCLSPLVQIMKTPPSELIDRLMDELCNS 1387
                  **********9999999*******9999765 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.2
        Cnd1   38 RktaaivvakL...ilndmvkekgflselaklleDenp.rVvanalaalteiseksenaiynllpdiisklsd.......alnecsewgqitilefL 123 
                  R+ aa+++a +   +    +ke +++++l+++ eD+++ + ++ a +a++  s+  ++++    ++++  l++       +  e++e++ ++i+  +
  CDO72622.1 1393 RRGAAYGLAGVvkgLGISAIKEYNIFERLKTATEDKKRfEPRQGAMFAFETFSSTLGRLFEPYIIHVLPLLLNsfgdgvpDVREATEDAARVIMANM 1489
                  67777777777666777889999999*******9998536788899999999999667777777777776666666677777789999999999888 PP

        Cnd1  124 lsy 126 
                  + y
  CDO72622.1 1490 SGY 1492
                  776 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.17
        Cnd1   60 lselaklleDenprVvanalaalteisek.senaiynllpdiiskl 104 
                  + +l   l+D++++V+a a  +l++  e  s+ +i +l+p  ++ +
  CDO72622.1 1539 IPRLTGVLTDSHAQVRAAANKSLKQFGEViSNPEIQSLVPVFLKAM 1584
                  67889999************99999999955444555555555555 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.085
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL....ilndmvkekg.flselaklleDenprVvanalaalteisek.senaiynllpdiisklsda 107 
                  ++ ++++L+ +++  +k aa +v +L     ++d+v     +l ++   l D+ p+ +a a  al  + e+ +e  +  l+p ++  l+++
  CDO72622.1 1615 IPIIERGLRERSADTKKKAAQIVGNLasltDSKDFVPYLSrLLPMVHVVLADPVPEARATAAKALGTLVERlGEGHFPDLVPGLLRTLKTD 1705
                  5567899****************999876555678877666888888899************99999999976677777777777777655 PP

  == domain 7  score: 10.3 bits;  conditional E-value: 0.00055
        Cnd1   15 vpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteisek....senaiynllpdiisklsd 106 
                  ++  + ++++p+ ++L+D++ yVR+ a+ +   +++n   k  + +l el++ + D+  r+++ ++++  e++ k    s++a ++   +i+  +++
  CDO72622.1 1767 FQPHLPKIIPPILSGLSDSEDYVREAAMRAGRMIVTNYSSKAIDlLLPELERGMFDPGWRIRQASITLVGELLFKvsgiSGKAEIEEEEEIVETVVA 1863
                  5556668899**************9887776666888888888889**********************99999987555557777777777777775 PP

        Cnd1  107 ..alne............................csewgqitilefLlsyipkdkqe 133 
                    +                               + +++ i+i ++L++ +p++ +e
  CDO72622.1 1864 esS--RkalvevlgverrdrilaalylarqdsvnVVRQASIHIWKALVHNTPRTVRE 1918
                  330..1334444444444444444444445555566666666666666666666664 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.023
        Cnd1   22 lvepLrkrLkDedpyVRktaaivvakLilndmvkekg....flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsew 114 
                  ++  L+ + +D+   VR+  + +   L++n+   +++    +++++  ll+ ++   ++ a    te+ +ks++++++ l  ++  +s + +  +++
  CDO72622.1 1882 ILAALYLARQDSVNVVRQASIHIWKALVHNTPRTVREilpeLMEQIILLLTSDEVDQQETAARTVTELCRKSGEKMLSDLVAVLRTMSGSADPRKRE 1978
                  677889999999999**99999999999888877777323344555556655555557888889999999999999999999999999998889999 PP

        Cnd1  115 gqitilefLlsyipkdkq..eaeslveklcprlqhansavvl 154 
                  g +  l  L++ ++++++  + ++++  + + l   +  v  
  CDO72622.1 1979 GVCLTLCELMQSTTDTQRegQEDDIISMVRASLVDDEANVRA 2020
                  999999999998888777234567777777766666655555 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.015
        Cnd1   32 DedpyVRktaaivvakLilndm.....vkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsd 106 
                    dp  R+   +++++L++ ++      +e +++s+++  l D++++V+a a  a+  ++e  + +ai +  p+++  l +
  CDO72622.1 1971 SADPRKREGVCLTLCELMQSTTdtqreGQEDDIISMVRASLVDDEANVRAAAAKAFDVLQEYiGARAIDETIPTLLEALRQ 2051
                  55555566666666666443321111133555899999999***************9999998778888888888877764 PP

  == domain 10  score: 1.6 bits;  conditional E-value: 0.26
        Cnd1    3 Ralairtlg..cirvpnlveylvepLrkrL....kDe.dpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksena 92  
                  ++ ++ +l+    r+p++v ++ ++L++ +    +D+ +  VR +aa ++  L++n+   +  ++ el++  + +++ + a+ l+al  + + ++++
  CDO72622.1 2326 KSAILSALTtmLERIPAFVKPFFPQLQRVFvksaSDPaSLAVRSNAAHALGVLMKNQPR-VDPVVTELLTGARSNEDAIAASLLLALARVVRSAGSN 2421
                  56666666665668888888888888864322226652568999999999999988864.5567888888888888888888888888888776666 PP

        Cnd1   93 iynllpdiisklsdalnecsew 114 
                  +    ++ +  l   +++++e+
  CDO72622.1 2422 VGDKAREACADLI--IETFKEQ 2441
                  6555555555555..4455555 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   1.1e+03      50     100 ..      35      85 ..      34     103 .. 0.89
   2 !   15.6   0.0   8.9e-06    0.0089      81     207 ..    1445    1568 ..    1436    1576 .. 0.92
   3 ?    2.9   0.0      0.07        70      82     162 ..    1605    1687 ..    1588    1705 .. 0.80
   4 !    6.5   0.0    0.0055       5.5      54     162 ..    1733    1843 ..    1725    1875 .. 0.73
   5 ?    4.5   0.1     0.023        23      72     211 ..    1900    2037 ..    1881    2047 .. 0.74
   6 ?   -3.8   0.0       7.5   7.5e+03     142     208 ..    2167    2228 ..    2140    2230 .. 0.71
   7 ?   -1.9   0.0       2.1   2.1e+03      87     130 ..    2343    2384 ..    2325    2411 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
     CLASP_N  50 clkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLl 100
                 ++k+ ++a+  a + L t+  ++  ++lke + +l ++ d ++ ++++++ 
  CDO72622.1  35 IMKDWSNAMRAAQTRLFTSSTKARTQFLKEELLVLANHGDLSLSQIMDIFK 85 
                 578888999999999**************************9999999875 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.9e-06
     CLASP_N   81 aiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas.fspri.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllld 175 
                  + +l++ ++p++ ++lp+Ll+  gd    ++++++ a   +++n+s +  +  l  l ++l +K  +++  s+++L ++    +   ++l++sl   
  CDO72622.1 1445 SSTLGRLFEPYIIHVLPLLLNSFGDGVPDVREATEDAARVIMANMSgYGLKTvLPSLLSGLDEKQWRTKKGSIELLGMMAYCAP---KQLSQSL--P 1536
                  5678888**************************************98888888*******************************...8888888..5 PP

     CLASP_N  176 liekslkkgleDanptVRetaRstfweffkvw 207 
                   + + l+ +l+D+  +VR +a + + +f +v 
  CDO72622.1 1537 IVIPRLTGVLTDSHAQVRAAANKSLKQFGEVI 1568
                  69********************9999997775 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.07
     CLASP_N   82 iqlkeqldpmveillptLlkllgdtKkiisqn.an.qalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfe 162 
                   + +++l+ ++ i+   L ++ +dtKk ++q  +n ++l++    +++ +r+l ++ v l d  +++R+++a+ L +l++r +
  CDO72622.1 1605 YIDHSSLALVIPIIERGLRERSADTKKKAAQIvGNlASLTDSKDFVPYLSRLLPMVHVVLADPVPEARATAAKALGTLVERLG 1687
                  45566689999999999999999999999996233256888888999999999999999999999999999999999998876 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0055
     CLASP_N   54 lleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfs.pri.lqvlsvalqdKnvqpRe 148 
                  ll  i+ +++s r+t+    ++ll  l  +++ +++p + +++p +l  l+d  + ++++a  a   +++n s +  ++ l  l+ ++ d   ++R+
  CDO72622.1 1733 LLPDIIANAQSPRSTVREGFMSLLVFLPATFGARFQPHLPKIIPPILSGLSDSEDYVREAAMRAGRMIVTNYSSKaIDLlLPELERGMFDPGWRIRQ 1829
                  5667888999999999999999999999999999999999999999999999999999999999999999988220233445566666666666666 PP

     CLASP_N  149 ysaiwLkilltrfe 162 
                   s++++  ll + +
  CDO72622.1 1830 ASITLVGELLFKVS 1843
                  66666655555555 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.023
     CLASP_N   72 tgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas..fsprilqvlsvalqdKnvqpReysaiwLkilltrfeshks 166 
                  +++h+ k l++   + + + +  l++ ++ ll +      ++a+ +++ l+++ +  + ++++ vl + +    ++ Re ++  L  l+++ +    
  CDO72622.1 1900 ASIHIWKALVHNTPRTVREILPELMEQIILLLTSDEVDQQETAARTVTELCRKSGekMLSDLVAVLRTMSGSADPRKREGVCLTLCELMQSTT---- 1992
                  667888888888888888888888888888888888888999999******999933444555555555555556666655555555555555.... PP

     CLASP_N  167 kleasllldliekslkkgleDanptVRetaRstfweffkvwPsrA 211 
                    ++++  d i  ++++ l D + +VR +a ++f  + ++  +rA
  CDO72622.1 1993 DTQREGQEDDIISMVRASLVDDEANVRAAAAKAFDVLQEYIGARA 2037
                  344444448899*****************9999977776666655 PP

  == domain 6  score: -3.8 bits;  conditional E-value: 7.5
     CLASP_N  142 KnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwP 208 
                   +v+ R  ++++ +i+ +++e     l+ sl       +l+++l D + +V  +a +++  f k +P
  CDO72622.1 2167 ESVKRRVSACELFAIFCEESE-----LDSSLYRVDWIRQLVSLLDDREVSVHTAAWNALDVFVKSVP 2228
                  477888888888888888888.....44444333355778888888888888888777777777666 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 2.1
     CLASP_N   87 qldpmveillptLlkllgdtKki.isqnanqalaallsnasfspr 130 
                   ++p+  +l  +++k  +d   + +++na++al  l++n +   r
  CDO72622.1 2343 FVKPFFPQLQRVFVKSASDPASLaVRSNAAHALGVLMKNQP---R 2384
                  46666667777778888887765268999999999999877...3 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.089        88     202     275 ..    1324    1388 ..    1261    1396 .. 0.72
   2 ?   -1.2   0.0      0.83   8.3e+02     216     243 ..    1531    1558 ..    1519    1561 .. 0.77
   3 !   10.6   0.0   0.00022      0.22      61     154 ..    1593    1683 ..    1589    1715 .. 0.84
   4 ?   -1.5   0.0       1.1   1.1e+03      35     181 ..    1729    1868 ..    1703    1887 .. 0.77
   5 !    8.3   1.1    0.0011       1.1      71     207 ..    1912    2033 ..    1899    2069 .. 0.79
   6 !    5.8   0.4    0.0063       6.3     195     242 ..    2171    2216 ..    2091    2224 .. 0.84
   7 ?    2.5   0.0     0.066        66     121     153 ..    2347    2378 ..    2273    2445 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.089
        IFRD  202 lLltllpssklnkkleedleealealvelLdssdvevriAAGeaiALlfElsreedeefeeeeeedteelleql 275 
                   ++ +l      ++ + +l +++e+lv  L+ +  +v++A +  +  l  + +++ +e   +    ++el+++ 
  CDO72622.1 1324 RVARHL------DSSDPRLPSIVERLVGALKTPAEQVQMAVSDCLSPLVQIMKTPPSELI-DR--LMDELCNSP 1388
                  444444......22223346789*************************999999988877.55..899999875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.83
        IFRD  216 leedleealealvelLdssdvevriAAG 243 
                  l+++l  ++++l+ +L++s+ +vr AA 
  CDO72622.1 1531 LSQSLPIVIPRLTGVLTDSHAQVRAAAN 1558
                  444454469*****************96 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00022
        IFRD   61 sllellsshyleefveerlatlldalekslkkgkseEqalAlkalall.citlgagdesee..ileelkpvLkriikdssvslsakaaaieaLgllt 154 
                  +l +ll++ +++    ++la +++++e+ l++ +++ +  A+++++ l  +t    d+++   +l +l p++  ++ d    ++a+a+a++aLg+l+
  CDO72622.1 1593 ALSSLLKTSFMHYIDHSSLALVIPIIERGLRERSADTKKKAAQIVGNLaSLT----DSKDFvpYLSRLLPMVHVVLADPV--PEARATAAKALGTLV 1683
                  67788899999999999*******************7777777766551677....444446699999999999999999..************886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.1
        IFRD   35 dweekLkqaidelteksaktReaaLesllellsshyleefveerlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkr 131 
                    e  L ++i + +  +++ Re  ++ ll  l   + ++  + +l ++++ +++ l  +++  + +A++a  ++ +t      s + ++ l p L+r
  CDO72622.1 1729 RMEGLLPDIIANAQSPRSTVREGFMS-LLVFLPATFGAR-FQPHLPKIIPPILSGLSDSEDYVREAAMRAGRMI-VT----NYSSKAIDLLLPELER 1818
                  56667777777777777777775544.444444444444.4677888888888888877777888888887766.77....7888899999999999 PP

        IFRD  132 iikdssvslsakaaaieaLg..lltfvggadeeeieelmeflleifssdgqs 181 
                   + d      +++a i+  g  l+ + g ++++eiee  e+ +++++++  +
  CDO72622.1 1819 GMFDPG--WRIRQASITLVGelLFKVSGISGKAEIEEEEEIVETVVAESSRK 1868
                  999998..99999999999986667777888999999999999999887765 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0011
        IFRD   71 leefveerlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLglltfvggadeeeieel 167 
                   ++ v+e l +l+++++  l +++ + q +A++ ++ lc       + e++l +l+ vL+++  +++     ++    +L+l+ ++ + ++++ e +
  CDO72622.1 1912 TPRTVREILPELMEQIILLLTSDEVDQQETAARTVTELCRK-----SGEKMLSDLVAVLRTMSGSAD----PRKREGVCLTLCELMQSTTDTQREGQ 1999
                  577899999*****************************877.....7799****9999998755444....55556678889*99999999999999 PP

        IFRD  168 meflleifssdgqsieaadsaskalvtaalsawglLltll 207 
                   + + +++  ++   ea++       +aa +a  +L  ++
  CDO72622.1 2000 EDDIISMVRASLVDDEANV------RAAAAKAFDVLQEYI 2033
                  9999999999998666544......445555555555555 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.0063
        IFRD  195 aalsawglLltllpssklnkkleedleealealvelLdssdvevriAA 242 
                    +sa +l +  +++s+l ++l +   + +++lv+lLd+ +v+v +AA
  CDO72622.1 2171 RRVSACELFAIFCEESELDSSLYR--VDWIRQLVSLLDDREVSVHTAA 2216
                  4578888999999*******9999..899******************9 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.066
        IFRD  121 ileelkpvLkriikdssvslsakaaaieaLgll 153 
                  ++ +l++v+ + ++d + sl+++++a++aLg+l
  CDO72622.1 2347 FFPQLQRVFVKSASDPA-SLAVRSNAAHALGVL 2378
                  45566666666666666.999********9987 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.71   7.1e+02     154     184 ..     361     396 ..     326     406 .. 0.72
   2 ?    1.4   0.0     0.092        92     245     386 ..    1316    1369 ..    1149    1389 .. 0.52
   3 ?   -0.6   0.0      0.38   3.7e+02     114     197 ..    1613    1702 ..    1585    1707 .. 0.66
   4 ?   -1.0   0.0      0.48   4.7e+02     113     165 ..    1772    1824 ..    1768    1857 .. 0.74
   5 !   10.0   0.1   0.00023      0.23     319     414 ..    1896    1997 ..    1878    2049 .. 0.82
   6 !    4.7   0.0    0.0094       9.3     144     180 ..    2188    2225 ..    2164    2245 .. 0.75
   7 ?   -0.3   0.0      0.31   3.1e+02     119     148 ..    2355    2385 ..    2318    2465 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.71
                 HHHHHHCTT-SSHHHHHHHHHHHHHH.....HCCCC CS
   Adaptin_N 154 veeikellsdkdpgvvlaAvalleei.....kkndr 184
                 +  + ++ ++++p+v  +Av+l++ +     +  d+
  CDO72622.1 361 LTPTLNSAKSTNPIVRINAVTLFKVLvghnrNSADQ 396
                 555556668888888888888888887554434444 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.092
                  CHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHH CS
   Adaptin_N  245 naVlletvnlivelapknelivlavnaLvrllsskdenlryvaLrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeiv 341 
                  +aV++   +++ +l+++++ +  +v++Lv  l+++ e +++++ ++                                                   
  CDO72622.1 1316 EAVVILFGRVARHLDSSDPRLPSIVERLVGALKTPAEQVQMAVSDC--------------------------------------------------- 1361
                  3333333333333444433333444444444444444444444333................................................... PP

                  HHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH CS
   Adaptin_N  342 keLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllell 386 
                                                       l+ l++++
  CDO72622.1 1362 -------------------------------------LSPLVQIM 1369
                  .....................................33333333 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.38
                  HHHHHHHHHHT-SSHHHHHHHHHHHHHCCCC..CHHCCCCC..HHHHHHHCTT-SSHHHHHHHHHHHHHH..HCCCCCCCHHHHHHHCCH CS
   Adaptin_N  114 dlapaikkllkdrspyvrkkAalailklykk..dpdllrkq..lveeikellsdkdpgvvlaAvalleei..kkndrlllkllpklvrrL 197 
                   + p i++ l+ rs+  +kkAa+++  l ++  ++d ++    l++ ++  l+d  p   ++A ++l  +  +  +  + +l+p l r L
  CDO72622.1 1613 LVIPIIERGLRERSADTKKKAAQIVGNLASLtdSKDFVPYLsrLLPMVHVVLADPVPEARATAAKALGTLveRLGEGHFPDLVPGLLRTL 1702
                  466889999999999999999999999999865444444433357777777788777777777777777753333333236666666665 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.48
                  HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SS CS
   Adaptin_N  113 edlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkd 165 
                  +++ p i + l+d++ yvr +A  a   ++ ++++   + l++e++  + d  
  CDO72622.1 1772 PKIIPPILSGLSDSEDYVREAAMRAGRMIVTNYSSKAIDLLLPELERGMFDPG 1824
                  67888888889999999999888888888887777753437777776666555 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00023
                  HHHHHHHHHHCCCXXT..TTHHHHHHHHHHHT...TSSXXHHHHHHHHHHHHHHHHHS.CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHST CS
   Adaptin_N  319 sirlkaldlllklvde..sNvkeivkeLkkyv...kevadedfksklvkaIgrlaekf.atdaewvldvllellslsgesvkdeivevirdliqkvp 409 
                   +r+  +++  +lv    + v+ei+ eL++++     + + d  + +++++ +l+ k+ +++ ++ ++vl  +  +++   ++ ++  +++l+q + 
  CDO72622.1 1896 VVRQASIHIWKALVHNtpRTVREILPELMEQIillLTSDEVDQQETAARTVTELCRKSgEKMLSDLVAVLRTMSGSADPRKREGVCLTLCELMQSTT 1992
                  45677799999998642289***********8777455566789**************999999999999999999999999999*******99988 PP

                  TTSTT CS
   Adaptin_N  410 elhee 414 
                  + ++e
  CDO72622.1 1993 DTQRE 1997
                  77665 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.0094
                  CCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.H CS
   Adaptin_N  144 kdpdllrkqlveeikellsdkdpgvvlaAvalleei.k 180 
                  +d++l+r +++ ++++ll+d++++v +aA ++l+   k
  CDO72622.1 2188 LDSSLYRVDWIRQLVSLLDDREVSVHTAAWNALDVFvK 2225
                  488899888**********************9987653 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 0.31
                  HHHHHT-SSH.HHHHHHHHHHHHCCCCCHHC CS
   Adaptin_N  119 ikkllkdrsp.yvrkkAalailklykkdpdl 148 
                    k ++d+ +  vr++Aa+a+  l+k++p  
  CDO72622.1 2355 FVKSASDPASlAVRSNAAHALGVLMKNQPRV 2385
                  3344555555788888888888888777765 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   1.2e+03     109     157 ..     345     393 ..     263     404 .. 0.77
   2 !   10.7   0.0   0.00028      0.28      78     158 ..    1494    1572 ..    1442    1586 .. 0.80
   3 ?    0.7   0.0       0.3     3e+02     259     277 ..    1649    1667 ..    1628    1703 .. 0.69
   4 ?    1.4   0.0      0.19   1.9e+02     117     146 ..    1767    1796 ..    1752    1814 .. 0.79
   5 ?    5.2   0.0     0.013        13     127     160 ..    2200    2239 ..    2166    2248 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
        Tti2 109 irqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtllekless 157
                 +  +++    +++ ++  p Ln + +t++ v+++++ l + l+ + ++s
  CDO72622.1 345 LPAYSHPVEGDSFRRLLTPTLNSAKSTNPIVRINAVTLFKVLVGHNRNS 393
                 4455555225789999999*******************99999887665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00028
        Tti2   78 lerfdeslsddesrkpWksgdlkaisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk 158 
                  l+ + +sl +  ++k+W+ ++  +i +l ++ + + ++ +++++p+++P +  +l d++ +v++ + k L+++ e +++ +
  CDO72622.1 1494 LKTVLPSLLSGLDEKQWR-TKKGSIELLGMMAYCAPKQ-LSQSLPIVIPRLTGVLTDSHAQVRAAANKSLKQFGEVISNPE 1572
                  555556777777889***.555799********9*999.99********************************99999875 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.3
        Tti2  259 tvkhLkrlipllseilsnP 277 
                  +v +L+rl+p+++ +l +P
  CDO72622.1 1649 FVPYLSRLLPMVHVVLADP 1667
                  4566666666666666665 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.19
        Tti2  117 ieanwplivPpiLnllDdtdtsvKlrGlkl 146 
                  ++ ++p i+PpiL+ l d++  v++ +++ 
  CDO72622.1 1767 FQPHLPKIIPPILSGLSDSEDYVREAAMRA 1796
                  5679****************9999988776 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.013
        Tti2  127 piLnllDdtdtsvKlrGlklLqtlleklessk......ll 160 
                   +++llDd+++sv + + + L+ +++++++++       l
  CDO72622.1 2200 QLVSLLDDREVSVHTAAWNALDVFVKSVPKDEleplvvPL 2239
                  5899*************************99877776644 PP

>> Ecm29  Proteasome stabiliser
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0025       2.5     390     456 ..    1320    1386 ..    1279    1398 .. 0.77
   2 ?    2.6   0.0     0.043        43     231     305 ..    1537    1612 ..    1507    1725 .. 0.76
   3 ?   -2.5   0.0       1.5   1.5e+03      16      50 ..    1766    1800 ..    1762    1811 .. 0.81
   4 ?   -2.4   0.0       1.4   1.4e+03      75     125 ..    1891    1945 ..    1870    2018 .. 0.65
   5 ?    2.1   0.1     0.062        61     390     476 ..    2093    2181 ..    2080    2195 .. 0.76
   6 ?   -1.2   0.0      0.63   6.3e+02     381     439 ..    2277    2340 ..    2271    2357 .. 0.79
   7 ?    3.6   0.0     0.021        21     375     480 ..    2358    2456 ..    2291    2463 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0025
       Ecm29  390 ealGlLakrapslvredlsliefLFdsLeeeesevrvsIqeALssllsafkeleseaskekLeelll 456 
                     G  a++ +s+  +  s++e+L  +L++ +++v++++ ++Ls l++ +k ++se + + + el+ 
  CDO72622.1 1320 ILFGRVARHLDSSDPRLPSIVERLVGALKTPAEQVQMAVSDCLSPLVQIMKTPPSELIDRLMDELCN 1386
                  4556677777766666689********************************9977766666667665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.043
       Ecm29  231 evlpallvasadsdssvsdraeelLKrlsvdledealvdkLfslflgs..keeskispaspalrlkIlslLskSvla 305 
                   v+p l  + +ds  +v  +a++ LK++   + +++ +++L+ +fl    ++++  +++s+ l++  ++++ +S+la
  CDO72622.1 1537 IVIPRLTGVLTDSHAQVRAAANKSLKQFGEVISNPE-IQSLVPVFLKAmvDPAKTPNALSSLLKTSFMHYIDHSSLA 1612
                  356666666677777777777777777777555554.5777777776666777777777777777777777777754 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
       Ecm29   16 kLeklLskfLpplLlklasphasvRkkVieilqhi 50  
                   ++  L k+ pp+L+ l+ ++  vR++ +     i
  CDO72622.1 1766 RFQPHLPKIIPPILSGLSDSEDYVREAAMRAGRMI 1800
                  6899999*******************999765555 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.4
       Ecm29   75 easslvrnfsllyiekgidRlsaeerkellpkllkgis....kkpsqhqarlfnl 125 
                  ++s +v + + + i k++   ++++ +e+lp+l+++i     + + ++q+++ + 
  CDO72622.1 1891 QDSVNVVRQASIHIWKALVHNTPRTVREILPELMEQIIllltSDEVDQQETAART 1945
                  3444444445555666666666666666666666665544443333444444444 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.062
       Ecm29  390 ealGlLakrapslvredlsliefLFdsLeeee.....sevrvsIqeALssllsafkeleseaskekLeellleyleadeeesaersvryvav 476 
                  +al++L+  a s  +++l+++   + ++ e++     +e++++I+eA+  l++++ +    +  + L  lll + ++++ ++ ++++ + a+
  CDO72622.1 2093 RALASLMTVAGSALSKRLNVVLSALVKVHEDPtttkdEELKSAIEEAIHALMRSVCDV---EGLNTLMLLLLGWAKHESVKRRVSACELFAI 2181
                  567777777777777777777777777777766665579****************866...5689999999998876666666666666665 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 0.63
       Ecm29  381 seelrslaYealGlLakrapslvred..lsliefLFdsLeeee...sevrvsIqeALssllsaf 439 
                  s+e+r++a  a+G+L++r++++  +   + +   L +  ++++   + v+++I +AL+++l+ +
  CDO72622.1 2277 SNEQREQAAYAIGDLVERTEESAMKPfvVPFTGPLIRVATQATtypPGVKSAILSALTTMLERI 2340
                  678899998999****999999988866556666666555555555899999999999999865 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.021
       Ecm29  375 eknssaseelrslaYealGlLakrapslvredlsliefLFdsLeeeesevrvsIqeALssllsafkeleseaskekLeellleyleadeeesaersv 471 
                  + ++ as+ +rs a +alG L+k++p +      +++ L++  +++e+ ++ s+  AL  ++++   +  ++ +e   +l++e +   +e+++e++ 
  CDO72622.1 2358 SASDPASLAVRSNAAHALGVLMKNQPRVD----PVVTELLTGARSNEDAIAASLLLALARVVRSAGSNVGDKAREACADLIIETF---KEQHEESYY 2447
                  3345678999****************885....689999999999999**************9998777888899999*****99...578888888 PP

       Ecm29  472 ryvavkyan 480 
                  r va+ +a 
  CDO72622.1 2448 RSVAALFAA 2456
                  888887764 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.3     3e+02       3      44 ..    1434    1475 ..    1432    1481 .. 0.92
   2 ?    3.7   0.0     0.098        97      24      89 ..    1493    1558 ..    1477    1566 .. 0.82
   3 ?    3.0   0.0      0.16   1.6e+02       3      70 ..    1513    1580 ..    1511    1586 .. 0.85
   4 ?    5.9   0.0      0.02        20      10      48 ..    1756    1794 ..    1747    1831 .. 0.80
   5 ?   -0.1   0.0       1.4   1.4e+03      24      48 ..    1999    2023 ..    1916    2042 .. 0.69
   6 ?   -1.4   0.0       3.6   3.6e+03      27      95 ..    2155    2224 ..    2135    2226 .. 0.70
   7 ?   -2.4   0.0       7.5   7.5e+03       8      57 ..    2409    2459 ..    2406    2467 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.3
  Vac14_Fab1_bd    3 rkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvR 44  
                     r+g++ ++ + + +l++  ++y+ ++++ +l++f D    vR
     CDO72622.1 1434 RQGAMFAFETFSSTLGRLFEPYIIHVLPLLLNSFGDGVPDVR 1475
                     89*********************************9877776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.098
  Vac14_Fab1_bd   24 yleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89  
                      l+++++++l+ +++k+ r++  ++E l  +a  a +++ + l  +   l+ +++Ds+++v+ +a+
     CDO72622.1 1493 GLKTVLPSLLSGLDEKQWRTKKGSIELLGMMAYCAPKQLSQSLPIVIPRLTGVLTDSHAQVRAAAN 1558
                     577888889999999999999999999999999999999999999999999999999999998875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.16
  Vac14_Fab1_bd    3 rkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneif 70  
                     +kg++  L  +a    k++++ l  +++ +  +++D+ ++vR  a  sl     v+ +  ++ l  +f
     CDO72622.1 1513 KKGSIELLGMMAYCAPKQLSQSLPIVIPRLTGVLTDSHAQVRAAANKSLKQFGEVISNPEIQSLVPVF 1580
                     78888889999999999999999*******************99999998888888877777777666 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.02
  Vac14_Fab1_bd   10 LaavaialekkikeyleeivkpvlkcfsDkdsrvRyyac 48  
                     L ++  + +++ +++l +i++p+l+ +sD+++ vR  a+
     CDO72622.1 1756 LVFLPATFGARFQPHLPKIIPPILSGLSDSEDYVREAAM 1794
                     55566677788999********************97766 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.4
  Vac14_Fab1_bd   24 yleeivkpvlkcfsDkdsrvRyyac 48  
                       ++i+++v +++ D+++ vR  a+
     CDO72622.1 1999 QEDDIISMVRASLVDDEANVRAAAA 2023
                     3345555555555555555554443 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 3.6
  Vac14_Fab1_bd   27 eivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga.elldrll 95  
                     +++  +l   + ++ + R  acE +   +  ++ +   +  +    lv+l+ D + sv+++a + ld  +
     CDO72622.1 2155 TLMLLLLGWAKHESVKRRVSACELFAIFCEESELDSSLYRVDWIRQLVSLLDDREVSVHTAAwNALDVFV 2224
                     5555666666667777788888866555666665555555566678999999999999988745676655 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 7.5
  Vac14_Fab1_bd    8 igLaavaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakv 57  
                     ++La v  + +++  ++  e   + ++++f+++ ++  y ++ +l+    v
     CDO72622.1 2409 LALARVVRSAGSNvGDKAREACADLIIETFKEQHEESYYRSVAALFAALSV 2459
                     566666666666634567777888999******999999999999976655 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.004         4      27      40 ..    1546    1559 ..    1534    1561 .. 0.80
   2 ?   -1.7   0.0       3.9   3.9e+03      21      38 ..    1776    1793 ..    1771    1793 .. 0.79
   3 ?   -2.9   0.0       9.2   9.2e+03      23      42 .]    1816    1835 ..    1813    1835 .. 0.89
   4 ?    6.4   0.3     0.011        11      17      38 ..    2001    2022 ..    1991    2023 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.004
                    HHSS-HHHHHHHHH CS
  Cohesin_HEAT   27 ltDsspsVRdAaLe 40  
                    ltDs ++VR+Aa +
    CDO72622.1 1546 LTDSHAQVRAAANK 1559
                    9***********87 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.9
                    HHHHHHHHSS-HHHHHHH CS
  Cohesin_HEAT   21 dtiarrltDsspsVRdAa 38  
                      i + l+Ds+  VR+Aa
    CDO72622.1 1776 PPILSGLSDSEDYVREAA 1793
                    55778899**999***98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9.2
                    HHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT   23 iarrltDsspsVRdAaLell 42  
                    ++r + D+   +R A++ l+
    CDO72622.1 1816 LERGMFDPGWRIRQASITLV 1835
                    7899***********99886 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.011
                    HHHHHHHHHHHHSS-HHHHHHH CS
  Cohesin_HEAT   17 pevldtiarrltDsspsVRdAa 38  
                    +++++++ + l+D ++ VR+Aa
    CDO72622.1 2001 DDIISMVRASLVDDEANVRAAA 2022
                    489999***************8 PP

>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.3e-05     0.032      12      81 ..    2392    2470 ..    2366    2484 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
                     T.....---TTHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTS CS
  UNC45-central   12 m.....rqpesvrslallilskll....daakeefeeaiseflesllekgdeddllnalsvltalFpvvpdvasalfls 81  
                           ++++ + +  ll+l+++      + +++ +ea+++ + + ++++ e+++ + +++l a + v pdv + ++ s
     CDO72622.1 2392 LltgarSNEDAIAASLLLALARVVrsagSNVGDKAREACADLIIETFKEQHEESYYRSVAALFAALSVFPDVVKPIVSS 2470
                     04455578889999999*******888877889999*************************************999865 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.42   4.2e+02      22      52 ..    1332    1363 ..    1313    1366 .. 0.84
   2 ?    2.6   0.0      0.13   1.3e+02       8      54 ..    1517    1564 ..    1511    1567 .. 0.83
   3 ?   -1.8   0.0       3.1   3.1e+03      21      38 ..    1770    1787 ..    1766    1802 .. 0.76
   4 !    7.5   0.0    0.0038       3.8       4      56 ..    1898    1951 ..    1895    1956 .. 0.84
   5 ?   -3.4   0.0       9.9   9.9e+03      20      51 ..    2104    2136 ..    2093    2140 .. 0.65
   6 ?   -1.9   0.1       3.2   3.1e+03       9      51 ..    2331    2375 ..    2326    2381 .. 0.72
   7 ?   -2.7   0.0       5.8   5.7e+03      32      61 ..    2410    2445 ..    2405    2472 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.42
     DUF3437   22 vPkwlpevleeLaraardpa.pirktvkktls 52  
                  + + lp+++e+L+ a ++pa +++ +v+++ls
  CDO72622.1 1332 SDPRLPSIVERLVGALKTPAeQVQMAVSDCLS 1363
                  55789***************88******9996 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
     DUF3437    8 vlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktlseF 54  
                  +  l+ +    p ++ + lp v+ +L+   +d++ ++r++++k l++F
  CDO72622.1 1517 IELLGMMAYCAPKQLSQSLPIVIPRLTGVLTDSHaQVRAAANKSLKQF 1564
                  5555555567899999************99999889**********99 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.1
     DUF3437   21 dvPkwlpevleeLaraar 38  
                  ++Pk +p++l+ L++ + 
  CDO72622.1 1770 HLPKIIPPILSGLSDSED 1787
                  589********9998654 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0038
     DUF3437    4 rhaavlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktlseFkr 56  
                  r+a++    Alv+ +p +v + lpe++e++    ++++ + ++t+ +t++e  r
  CDO72622.1 1898 RQASIHIWKALVHNTPRTVREILPELMEQIILLLTSDEvDQQETAARTVTELCR 1951
                  678899999********************8886666665899999999988665 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 9.9
     DUF3437   20 ydvPkwlpevleeLaraardpa.pirktvkktl 51  
                    + k l  vl++L++  +dp+    ++ k+++
  CDO72622.1 2104 SALSKRLNVVLSALVKVHEDPTtTKDEELKSAI 2136
                  456677788899999988888744555566555 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3.2
     DUF3437    9 lglsAlvlafpydvPkwlpevleeLaraardpa..pirktvkktl 51  
                   +l  +++  p  v ++ p++   +++ a+dpa   +r+++ ++l
  CDO72622.1 2331 SALTTMLERIPAFVKPFFPQLQRVFVKSASDPAslAVRSNAAHAL 2375
                  466677777778888888888888888999998644888877776 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 5.8
     DUF3437   32 eLaraardpa.pirktvkkt.....lseFkrthqDt 61  
                  +Lar  r+    ++++++++     ++ Fk +h+++
  CDO72622.1 2410 ALARVVRSAGsNVGDKAREAcadliIETFKEQHEES 2445
                  555544444434555555541111145566666654 PP

>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.061        61     173     198 ..    1086    1111 ..    1077    1113 .. 0.88
   2 ?   -2.1   0.0       2.5   2.5e+03      57     105 ..    1476    1523 ..    1441    1607 .. 0.56
   3 ?    0.6   0.0      0.37   3.7e+02       5      83 ..    1593    1696 ..    1589    1711 .. 0.64
   4 ?    4.5   0.1     0.024        24      24      73 ..    2094    2143 ..    2082    2158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.061
      NUC173  173 kklaklLsnaLyeqpeLrltickaLr 198 
                  +++a+lL   Ly+++ +r++ ++aL+
  CDO72622.1 1086 SEIAELLHGTLYQEVYVRTSCLQALQ 1111
                  79***********************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
      NUC173   57 elkkeadevigaairamGpevvLevlPLnleeeeeeklsegraWLLPlL 105 
                  e +++a +vi a ++  G ++vL  l   l+e+ +  +++g   LL ++
  CDO72622.1 1476 EATEDAARVIMANMSGYGLKTVLPSLLSGLDEK-QWRTKKGSIELLGMM 1523
                  556677777777777778877777666666643.223344444444444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.37
      NUC173    5 aleslLslkyqaawkev.levlsalfe.klgkrs...spllkkilktlgelresee....................felkkeadevigaairamGpe 76  
                  al+slL++++ + +++  l ++  ++e  l++rs   ++  ++i+ +l++l +s++                     e +  a +++g+ ++ +G  
  CDO72622.1 1593 ALSSLLKTSFMHYIDHSsLALVIPIIErGLRERSadtKKKAAQIVGNLASLTDSKDfvpylsrllpmvhvvladpvPEARATAAKALGTLVERLGEG 1689
                  6677777777777766424444444441467777544445777777777777777656666666666666666663367778888888888888877 PP

      NUC173   77 vvLevlP 83  
                   + +++P
  CDO72622.1 1690 HFPDLVP 1696
                  7777776 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.024
      NUC173   24 vlsalfeklgkrsspllkkilktlgelreseefelkkeadevigaairam 73  
                   l++l+++ g++ s+ l+ +l  l +++e+++ +  +e++++i  ai+a+
  CDO72622.1 2094 ALASLMTVAGSALSKRLNVVLSALVKVHEDPTTTKDEELKSAIEEAIHAL 2143
                  6889999999999999***************8888889999999998875 PP

>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.015        15      11      83 ..     635     702 ..     628     717 .. 0.61
   2 ?   -1.3   0.0       3.5   3.5e+03       3      62 ..    1649    1704 ..    1647    1722 .. 0.75
   3 ?   -2.1   0.0       6.1     6e+03       3      31 ..    1767    1795 ..    1765    1808 .. 0.85
   4 ?   -0.3   0.1       1.6   1.6e+03      25      81 ..    1897    1949 ..    1894    1969 .. 0.65
   5 ?   -1.0   0.0       2.8   2.8e+03      11      62 ..    2004    2051 ..    2000    2073 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.015
      Ipi1_N  11 llyirsAmTHispdIredslkfLdllLevapeelvssawvktLnnflallgwsk....eksskgstsakatssssss 83 
                 +++++ Am   sp Ir+++l++L+ l  + pe++       t+  + + +++ +    +++ +++     + +  +s
  CDO72622.1 635 SIFLHLAMDGSSPTIRRSALATLEKLAAAQPELIGL----STIAAITTYFSKVQtthlKTTAANG-----EETEARS 702
                 679999********************9999999333....4444444444442210022222222.....2222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.5
      Ipi1_N    3 laphaeslllyirsAmTHispdIredslkfLdllLevapeelvssawvktLnnflallgw 62  
                  + p+ ++ll +++  +    p+ r+++ k L  l+e  +e     ++  ++ ++l  l  
  CDO72622.1 1649 FVPYLSRLLPMVHVVLADPVPEARATAAKALGTLVERLGEG----HFPDLVPGLLRTLKT 1704
                  56888888888999999999999*************99987....555666666666655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 6.1
      Ipi1_N    3 laphaeslllyirsAmTHispdIredslk 31  
                  ++ph ++++  i s+++     +re +++
  CDO72622.1 1767 FQPHLPKIIPPILSGLSDSEDYVREAAMR 1795
                  79***************999999999887 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.6
      Ipi1_N   25 IredslkfLdllLevapeelvssawvktLnnflallgwskeksskgstsakatssss 81  
                  +r+ s+++ ++l++ +p+  v++   +++++++ ll ++  + ++++t a  t +  
  CDO72622.1 1897 VRQASIHIWKALVHNTPRT-VREILPELMEQIILLLTSD--EVDQQETAA-RTVTEL 1949
                  8999999999999999999.7777779999999999994..444444433.222322 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.8
      Ipi1_N   11 llyirsAmTHispdIredslkfLdllLevapeelvssawv..ktLnnflallgw 62  
                  ++++r+++    +++r+ + k +d+l e+++        +  +t+ ++l+ l++
  CDO72622.1 2004 ISMVRASLVDDEANVRAAAAKAFDVLQEYIGAR------AidETIPTLLEALRQ 2051
                  56666666666789****************999......233677777777766 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.6   4.5e+03      19      41 .]     639     662 ..     636     662 .. 0.79
   2 ?    2.9   0.0      0.12   1.2e+02      14      37 ..    1340    1363 ..    1337    1377 .. 0.67
   3 ?    7.0   0.0    0.0063       6.2      16      41 .]    1926    1951 ..    1917    1951 .. 0.88
   4 ?   -0.5   0.0       1.4   1.4e+03      14      32 ..    2198    2216 ..    2198    2220 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.6
                 HHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm  19 rLLs.sedeevqeeAawALsNLaa 41 
                 +L     ++++++ A+++L  Laa
  CDO72622.1 639 HLAMdGSSPTIRRSALATLEKLAA 662
                 555567899**********98875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
                  HHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   14 vppLvrLLssedeevqeeAawALs 37  
                  v++Lv  L+++ e+vq ++  +Ls
  CDO72622.1 1340 VERLVGALKTPAEQVQMAVSDCLS 1363
                  666777777777777766666665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0063
                  HHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   16 pLvrLLssedeevqeeAawALsNLaa 41  
                  + + LL+s+ ++ qe Aa++++ L++
  CDO72622.1 1926 QIILLLTSDEVDQQETAARTVTELCR 1951
                  5677999******************7 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.4
                  HHHHHHHTTTSSHHHHHHH CS
         Arm   14 vppLvrLLssedeevqeeA 32  
                  +++Lv+LL++  ++v ++A
  CDO72622.1 2198 IRQLVSLLDDREVSVHTAA 2216
                  689******9999998877 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.6   3.6e+03     131     240 ..     274     405 ..     270     417 .. 0.53
   2 ?   -1.9   0.0       1.3   1.3e+03     382     409 ..     641     668 ..     637     674 .. 0.86
   3 ?    4.7   0.1     0.014        14     333     421 ..    1289    1381 ..    1284    1384 .. 0.87
   4 ?    0.6   0.1      0.25   2.4e+02     372     420 ..    1494    1542 ..    1493    1583 .. 0.69
   5 ?    2.6   0.0     0.058        57     333     423 .]    1614    1701 ..    1610    1701 .. 0.83
   6 ?    2.4   0.0     0.066        66     369     399 ..    1768    1798 ..    1731    1816 .. 0.78
   7 ?    1.4   0.5      0.14   1.4e+02      21     154 ..    1856    1995 ..    1846    2063 .. 0.68
   8 ?   -2.4   0.0       1.9   1.9e+03      58     100 ..    2107    2147 ..    2043    2169 .. 0.69
   9 ?   -4.1   0.0       6.3   6.3e+03     280     308 ..    2197    2226 ..    2190    2238 .. 0.73
  10 ?    2.2   0.0     0.077        77     279     363 ..    2328    2418 ..    2323    2423 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.6
     MMS19_C 131 lssskqqevleevvalfltgdask......kfeplsesasesqkqli.............................ilftailaalrkevklpdlsell 194
                 +++s ++++l+ + ++ lt+ +        +             + +                             +++  +l a +  v+  +  +ll
  CDO72622.1 274 IDPSLKSDILQLYTTAVLTSRTPVsshissA-----------MHNFVastvtpddftsiilpamekallrspeislSIIAEFLPAYSHPVEGDSFRRLL 361
                 5556666666666666665533333333331...........222222333333333334555555555666555555555555555555556666666 PP

     MMS19_C 195 nellellaseaespflrlaylrllallvNKflkdedlselldelle 240
                 + +l+  + ++++p+ r+ ++ l+ +lv +  +++d + +++ell+
  CDO72622.1 362 TPTLN--SAKSTNPIVRINAVTLFKVLVGHNRNSADQEYATNELLS 405
                 66666..666788888888888888887444444555555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
     MMS19_C 382 aLdlpdaevkastLetlksileespslv 409
                 a+d +++++++s+L tl+ ++  +p+l+
  CDO72622.1 641 AMDGSSPTIRRSALATLEKLAAAQPELI 668
                 77889999***********999888876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.014
     MMS19_C  333 vlpklvegfks..........sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvpr 419 
                   lp+l++ f++          s++++ke++ + +  + +h+ +s   p Lp+++  L+ aL++p ++v+ ++ ++l+++++    +++   s+L+ r
  CDO72622.1 1289 RLPELISMFEAelastsagteSSDQIKEAVVILFGRVARHLDSS--DPRLPSIVERLVGALKTPAEQVQMAVSDCLSPLVQ----IMKTPPSELIDR 1379
                  5788888888888888889999*******************998..6********************************99....666666666666 PP

     MMS19_C  420 LL 421 
                  L+
  CDO72622.1 1380 LM 1381
                  65 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.25
     MMS19_C  372 LptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprL 420 
                  L+t+lP Ll +Ld ++   k+ ++e l  ++  +p+ +s+ l  ++prL
  CDO72622.1 1494 LKTVLPSLLSGLDEKQWRTKKGSIELLGMMAYCAPKQLSQSLPIVIPRL 1542
                  6677777777777777777777777777776666666666676666666 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.058
     MMS19_C  333 vlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprLLkl 423 
                  v+p +  g ++++ +tk+       +l + + ++  +p+L+ LlP++   L+ p +e +a + + l  ++e   +l + h  +Lvp LL++
  CDO72622.1 1614 VIPIIERGLRERSADTKKKAAQIVGNLASLTDSKDFVPYLSRLLPMVHVVLADPVPEARATAAKALGTLVE---RLGEGHFPDLVPGLLRT 1701
                  667777777776666666666666777777888999***********************999999999999...58888*********985 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.066
     MMS19_C  369 lpeLptLlPlLlqaLdlpdaevkastLetlk 399 
                   p+Lp+++P +l +L+ +++ v+ +++   +
  CDO72622.1 1768 QPHLPKIIPPILSGLSDSEDYVREAAMRAGR 1798
                  69*************9999999999887655 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.14
     MMS19_C   21 rvLeaLaelssekqlfetlvi....rllnkldlvlksnessaayahailstllkllekkqtdlekeellnsyydrivprlltlvvsaastss..... 108 
                  ++ e++ + ss+k+l+e+l +    r+l +l l+ +++ +    ++     + k+l +         ++   + +i+p l+++++   ++++     
  CDO72622.1 1856 EIVETVVAESSRKALVEVLGVerrdRILAALYLARQDSVN---VVRQASIHIWKALVH---------NTPRTVREILPELMEQIILLLTSDEvdqqe 1940
                  5666666667778888888777777788888666666554...222222222233333.........334445555555555544433333334444 PP

     MMS19_C  109 .........siltddrllevlgriinlivrslssskqqevleevvalfltgdask 154 
                           +  + +++l+ l+ +++++  s ++ k + v+  + +l+ ++++++
  CDO72622.1 1941 taartvtelCRKSGEKMLSDLVAVLRTMSGSADPRKREGVCLTLCELMQSTTDTQ 1995
                  5558888888889999999999999999999999999999999999999887776 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 1.9
     MMS19_C   58 aayahailstllkllekkqtdlekeellnsyydrivprlltlv 100 
                  ++   ++ls+l+k+ e  +  + k+e+l+s +++ ++ l+++v
  CDO72622.1 2107 SKRLNVVLSALVKVHEDPT--TTKDEELKSAIEEAIHALMRSV 2147
                  2344477777777777755..6677777777777777777765 PP

  == domain 9  score: -4.1 bits;  conditional E-value: 6.3
     MMS19_C  280 lldkLlelLs.edaelgqlvakafgvlvsd 308 
                  ++ +L++lL+  + ++ +++ +a+ v+v+ 
  CDO72622.1 2197 WIRQLVSLLDdREVSVHTAAWNALDVFVKS 2226
                  678999999944444455666788888775 PP

  == domain 10  score: 2.2 bits;  conditional E-value: 0.077
     MMS19_C  279 elldkLlelLs.edaelgqlvakafgvlvsddev.....vlskknhanirlLykQrfFstvlpklvegfkssdsetkenyLvALshllkhv 363 
                   +l+ L ++L+  +a ++ +  ++  v+v+   +     v s   ha   l+  Q   + v+ +l++g++s+++ + +  L AL+ ++++ 
  CDO72622.1 2328 AILSALTTMLErIPAFVKPFFPQLQRVFVKSASDpaslaVRSNAAHALGVLMKNQPRVDPVVTELLTGARSNEDAIAASLLLALARVVRSA 2418
                  567777777776667778888888888888855567888899999999999999999999************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.41u 0.32s 00:00:01.73 Elapsed: 00:00:00.51
# Mc/sec: 15189.30
//
Query:       CDO72623.1  [L=537]
Description: hypothetical protein BN946_scf184985.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-44  150.2  50.4    2.7e-40  138.4  53.0    2.1  2  MFS_1     Major Facilitator Superfamily
    1.2e-07   30.6  12.5    1.2e-07   30.6  12.5    2.0  2  TRI12     Fungal trichothecene efflux pump (TRI12)
      7e-06   25.2  16.5      7e-06   25.2  16.5    3.0  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4  53.0   4.6e-44   2.7e-40       1     352 [.      45     397 ..      45     398 .. 0.83
   2 !    7.4   0.0   0.00031       1.9     140     188 ..     458     503 ..     435     527 .. 0.71

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 4.6e-44
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l++++s+l+++i+++alp +++ +++ ++s+++++ + y+l++ ++++++Gr+sd fGr+  l++++ +f +g+l++ f++++  l+vlr l+G+g+
  CDO72623.1  45 LSLCILVSTLDATIVATALP-TISAAFN-AGSVVSWVPSSYFLTSTAFQPIYGRFSDIFGRKAALCMAMGIFMIGSLAAGFSQTIIQLIVLRGLAGAGG 141
                 5799****************.*******.**********************************************777779555559***********9 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee..kgtgpapl 196
                 g++  ++a++     +    g++ g++++ +++G+++gpllgg+la+ +gWr++f++  +vs+ a+v+++l lp +++e    ++         g a  
  CDO72623.1 142 GGIRHNIAVAQQPAKAFLVSGKYQGIIGVVVAFGFAVGPLLGGVLAEKAGWRWCFWVTLPVSVCAVVVVILILPLKAVEGNIAKKLAVVdyL--GTALT 238
                 8887777555444444478**********************************************999888888888888888777775332..22222 PP

       MFS_1 197 vpawkallkdpvlw....illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalg 290
                 +     l   p +w     + i++l+++f+f+++l++lp y+q  lg+s ++ +g++l  + +    +++++g++++ +gr r ++++++++ ++a+ +
  CDO72623.1 239 LA-GCTLIILPLIWvtviGVYITMLINGFVFYSALFYLPQYFQVGLGYS-AIRSGIFLLPVLVSQTLASFISGQIITWTGRyRATIYVGFGVWAVACGC 335
                 22.33444445567777778888888899********************.677775555555555555*************555566666666666666 PP

       MFS_1 291 lallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 l  + +++ + ll+++++l+G+g+g +  + +++a+ +++++ +  ++++ n+++ lgg l+
  CDO72623.1 336 LSTVTPATPQGLLVFFMLLAGTGAGGTLQTTTVAAQASVSRRDMSVVTAVRNFIRLLGGTLS 397
                 6666666666666668888999*****99999999999999******************986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00031
       MFS_1 140 lggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 lg+++    g+r+vf+++a + ++a v +++l++ ++ +r+ + + +++
  CDO72623.1 458 LGAYVK---GFRSVFILNASLNAVATVAAIALIRHTDLNRGDEDELRKR 503
                 333333...7*****************9999997777777766666664 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6  12.5     2e-11   1.2e-07      40     260 ..      36     251 ..       9     256 .. 0.74
   2 ?   -0.2   1.3     0.042   2.5e+02     473     555 ..     405     489 ..     298     518 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2e-11
       TRI12  40 prvvasfaafslnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkf.ntllaa 137
                  +vva f ++sl ++ + +     a+alp i          s + + + +  +    + gr++d fgr+  + ++  + ++g++     + f +t++  
  CDO72623.1  36 RKVVAVFFGLSLCILVSTLDATIVATALPTISAAFNAGSVVSWVPSSYFLTSTAFQPIYGRFSDIFGRKAALCMAMGIFMIGSLA----AGFsQTIIQL 130
                 469***********9999999999********999887776666555555555556789**********9988877777766654....4441456666 PP

       TRI12 138 mtllgvaagpagasp..lfvgelmsnktkflgllivsipvvvtsg..lspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrk 232
                 + l g+a    g     + v +  ++   + g     i vvv  g  ++p lg  la +  wrw f++ + +s  av+++++   p  ++ + g+ ++k
  CDO72623.1 131 IVLRGLAGAGGGGIRhnIAVAQQPAKAFLVSGKYQGIIGVVVAFGfaVGPLLGGVLAEKAGWRWCFWVTLPVSVCAVVVVILIL-P--LKAVEGNIAKK 226
                 6666766444444430044444333333333566556666665542279************************99998776653.4..56778877665 PP

       TRI12 233 reelakldwigiilvivgvslfllgvsw 260
                    la +d++g  l  +g +l++l + w
  CDO72623.1 227 ---LAVVDYLGTALTLAGCTLIILPLIW 251
                 ...9********************9998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.042
       TRI12 473 lashlssalrgtdipqasfsslleaaks.grieavkalpgmtteiaavvsramadsytasyanvyyfamalgvipiiaslcm.rd 555
                 +++ l   ++  ++p +++s++++  +  g   a          i+a v++ +  +y   +  v+ +  +l  +  +a++++ r 
  CDO72623.1 405 INNSLRHYMKSIGLPLSTISAIVDDPTVlGARTAATDSTFADLGISAAVAEHILGAYVKGFRSVFILNASLNAVATVAAIALiRH 489
                 4455666788888888888888876553244444444444556799999999999999999999999999988888877654243 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  16.5   1.2e-09     7e-06      46     189 ..      74     211 ..      50     216 .. 0.87
   2 !    8.1   2.5   0.00017         1      44      96 ..     161     213 ..     144     240 .. 0.82
   3 !    4.3  12.0    0.0025        15      14     126 ..     258     369 ..     242     426 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.2e-09
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                 + ++++ s++++ +++ + + g ++d+fGRk +l +a  +f+ig++  ++++   ++ +liv R l+G g G++   + + ++      + g+  ++  
  CDO72623.1  74 SVVSWVPSSYFLTSTAFQPIYGRFSDIFGRKAALCMAMGIFMIGSLAAGFSQ---TIIQLIVLRGLAGAGGGGIRHNIAVAQQPAKAFLVSGKYQGIIG 169
                 567899999*******************************************...9******************99998877665556667******** PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 + ++fG+ v+  +g +l++  +   wr+ ++++l  ++  +++++
  CDO72623.1 170 VVVAFGFAVGPLLGGVLAEKAG---WRWCFWVTLPVSVCAVVVVI 211
                 *************999998877...********999987666654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00017
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-T CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaa 96 
                 s +++g+i  ++ +G ++G l++g l+++ G ++++ ++  ++v + v+ +++
  CDO72623.1 161 SGKYQGIIGVVVAFGFAVGPLLGGVLAEKAGWRWCFWVTLPVSVCAVVVVILI 213
                 56788999999*************************99888888877776655 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0025
                 HHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH..HHHHHHHHHHHHH-TTTTSS-TGGGGGHH CS
    Sugar_tr  14 YdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslli..aavlfvigavlqaaakgknsvevlivgRv 110
                 Y t +i++f+  ++ ++   ++ +++  + s+++sg+++  +lv +++ s+++g ++++ GR  + +   ++v +v++++l+ +++++    +l++  +
  CDO72623.1 258 YITMLINGFVFYSA-LFYLPQYFQVGLGY-SAIRSGIFLLPVLVSQTLASFISGQIITWTGRYRATIYvgFGVWAVACGCLSTVTPAT-PQGLLVFFML 353
                 45556666665555.33333334444344.79******************************88877734677889999999999955.6777888899 PP

                 HHHHHHHHHHHHHHHH CS
    Sugar_tr 111 lvGigvGlasvlvPmy 126
                 l+G g+G++  ++++ 
  CDO72623.1 354 LAGTGAGGTLQTTTVA 369
                 *******998887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3724.04
//
Query:       CDO72624.1  [L=129]
Description: hypothetical protein BN946_scf184985.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00033   21.0   0.0     0.0011   19.4   0.0    1.8  1  HMG_box   HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     6e-08    0.0011       1      48 [.      17      69 ..      17      72 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6e-08
                --SS--HHHHHHHHHHHHHHHHS.....TTS-HHHHHHHHHHHHHHSHHHHHH CS
     HMG_box  1 pkRplsafflfskeqraklkaen.....PelknaeiskklgekWkalseeeKk 48
                p+Rp + f+lf+ ++ +++ +        +l+ + +s+ lge W+al+ +eK 
  CDO72624.1 17 PPRPANKFILFRLAKCKEMEQASealcgGTLQQRHLSVDLGEAWNALPVDEKN 69
                89*********9877777766542222257889******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 926.04
//
Query:       CDO72625.1  [L=136]
Description: hypothetical protein BN946_scf184985.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0013   19.4   0.0     0.0018   19.0   0.0    1.2  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
      0.081   12.7   0.1       0.12   12.1   0.1    1.3  1  DUF4448       Protein of unknown function (DUF4448)


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     2e-07    0.0018       2      93 .]      47     134 ..      46     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2e-07
  GPI-anchored   2 sPssgevvtagkpvtitWkdsgtdp.....gtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                    P +g+v+  g+  ++tW++ +  p     +   ++L++g     ++   +a++ +   g  ++tvp  + ++++Y + +  +s +    +S+ Fti
    CDO72625.1  47 YPHAGTVWYKGQRHNVTWDTTN-HPvnitnKLGRIMLRKGDI---TTPLILAKDFDILLGRIEVTVPW-VIPDNDYSVVLFGDSGN----FSPEFTI 134
                   699*****************64.4534333555677777755...89999******999*******88.66789*******77774....9****98 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.4e-05      0.12      26      50 ..      44      68 ..      33      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
     DUF4448 26 PFCtPkegselkvgktYyiTWdprf 50
                P   P+ g+ ++ g+ + +TWd++ 
  CDO72625.1 44 PVTYPHAGTVWYKGQRHNVTWDTTN 68
                6678******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 983.52
//
Query:       CDO72626.1  [L=98]
Description: hypothetical protein BN946_scf184985.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-10   40.2   0.0    4.2e-10   39.9   0.0    1.1  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.3e-14   4.2e-10      12      88 ..       5      83 ..       1      88 [. 0.88

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.3e-14
                TGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEEC...SCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEE CS
        YCII 12 asleeraallaahlayleelkkeGvllaaGpklv...idGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlvee 88
                ++ ++r+a++++hl+  + ++++G + +aG++l+   i++p+ae k ++g++ i+ea++l+ ++++++rd ++++G++ +
  CDO72626.1  5 GAPQRRQAVREKHLEDARLHASAGIIKLAGAMLTpesIESPTAE-KKMVGSVFICEAESLQHVHDLLKRDVYYTSGVWDK 83
                44589**************************9863336789997.99******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 717.11
//
Query:       CDO72627.1  [L=334]
Description: hypothetical protein BN946_scf184985.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0081   16.2   0.0      0.014   15.4   0.0    1.3  1  Cu-oxidase_3  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.8e-07     0.014      20     102 ..     137     221 ..     122     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.8e-07
                   ECTSSBS-EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG.....GSC.SGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT CS
  Cu-oxidase_3  20 vNgqfpgptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDGvpg.vtqcpiqpgesftyrftvkqqagtlwYhshlsl 102
                   +  ++pgp+   ++ +t+  +  N++ d+  s    G++  +++  DG+p  +++   +p  +  ++   +++agt+ Y +h+s+
    CDO72627.1 137 YSRSYPGPHAGSTTQRTLLSHGGNSAlDQASSHRSRGIRSMGNVAEDGPPAsLPTSSFSPALHSLPTAATQNPAGTMVYAPHASA 221
                   67899*******************99799999999*************87527999**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2313.84
//
Query:       CDO72628.1  [L=605]
Description: hypothetical protein BN946_scf184985.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-21   74.4   0.1    1.3e-20   73.3   0.1    1.6  1  DNA_pol_B_thumb  DNA polymerase beta thumb
      1e-17   64.4   0.0      2e-17   63.4   0.0    1.5  1  DNA_pol_B_palm   DNA polymerase beta palm
    9.6e-11   41.9   0.0    3.1e-10   40.3   0.1    1.8  2  HHH_8            Helix-hairpin-helix domain
      3e-09   36.6   0.0      1e-08   34.9   0.0    1.9  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
    2.1e-05   24.8   0.0    4.1e-05   23.9   0.0    1.4  1  BRCT_2           BRCT domain, a BRCA1 C-terminus domain
     0.0048   17.5   0.0      0.017   15.7   0.0    1.9  1  HHH_5            Helix-hairpin-helix domain
      0.006   16.8   0.0      0.049   13.9   0.0    2.3  2  Cdd1             Pathogenicity locus


Domain annotation for each model (and alignments):
>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.1   5.1e-24   1.3e-20       1      70 []     539     602 ..     539     602 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 5.1e-24
                      HHHHHHS-HHHHHHHHHHHHCT.TEEEETTEEE.......ETCCCEEEC-SSHHHHHHHCTS----GGGTT CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkk.glkLnssglrdekgkaeddddgelvevetErdvfelLglpyipPeeRe 70 
                      a+++++Gs +F+rdlR++ak+k g+k++ssg++       ++ d + +  +tE++vf+l+gl++++P++R+
       CDO72628.1 539 AVIGWSGSIMFQRDLRQWAKDKlGMKFDSSGIT-------RRYDSKEIHPKTEKEVFDLFGLEWVDPTWRN 602
                      89*******************************.......8999999***********************7 PP

>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   7.7e-21     2e-17       1     113 [.     409     532 ..     409     533 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 7.7e-21
                     -EEHHHHHHHHHHHHHHHHHH-TT-EEEE-HHHHTT-SEESSEEEEEEBTTBSTTSS--HHHHHHHHHHHHHTTSEEEEEE..E-SSEEEEEEE- CS
  DNA_pol_B_palm   1 riPreEvealealvkkaakeldpevevivcGSYRRgaessGDvDvlitkkdakseskklkklleklvkklkkkgfltdsLavesgeskfmGvcrl 95 
                     +iPr+Eve++ ++v ++++el+p++  +++G +RRg+ +s DvD++ t++da++     k+l +++v+kl+k+g++t+ ++     s f+G   l
      CDO72628.1 409 KIPRDEVEEMGRAVMHELNELEPGCVSTIVGGHRRGKPESNDVDIVFTHPDAEK----VKGLCKRFVRKLHKRGMVTHVMH----LSGFHGHNPL 495
                     6**************************************************999....68******************998....4566666666 PP

                     --S.................S..STS-EEEEEEEEE- CS
  DNA_pol_B_palm  96 pee.................e..kkelhrRiDlklvp 113
                     +++                 +  ++ + rR+Dl + p
      CDO72628.1 496 RTThwdslekaltvfilpqsSpfYRGTRRRLDLIFAP 532
                     66666666666666666665356889999***99877 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   1.2e-13   3.1e-10       1      68 []     234     299 ..     234     299 .. 0.97
   2 ?   -2.3   0.0       2.3   5.8e+03      49      62 ..     321     334 ..     307     336 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.2e-13
                 HHHHHHHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHHHHH CS
       HHH_8   1 NkeiadaLeeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakieeile 68 
                 N+++++ L+ + + + l+ +++  +++Y+rA + i+a+p++i+sl++ ++klp iG ki   +ee+l+
  CDO72628.1 234 NQDLVRELDIIRQSRALE-GEERSALSYQRALSIIKAYPDKIRSLKQ-VEKLPFIGVKISGLVEEFLD 299
                 99****************.899*************************.******************95 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.3
                 CTTSTT--HHHHHH CS
       HHH_8  49 ltklpgiGkkiaak 62 
                 ++++ giG+ +a++
  CDO72628.1 321 FSSVYGIGPNTARR 334
                 46788****99986 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.5   1.2e+04      21      30 ..     273     282 ..     270     288 .. 0.79
   2 !   34.9   0.0   3.9e-12     1e-08       2      29 ..     320     347 ..     319     356 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.5
  DNA_pol_lambd_f  21 Girtledlra 30 
                       ir+l+++ +
       CDO72628.1 273 KIRSLKQVEK 282
                      6899999976 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 3.9e-12
  DNA_pol_lambd_f   2 lFtkvyGVGpktAkkwyakGirtledlr 29 
                      lF++vyG+Gp tA+++y+ G+r+l+dl 
       CDO72628.1 320 LFSSVYGIGPNTARRLYNLGLRSLDDLE 347
                      8*************************96 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-08   4.1e-05      11      84 ..      44     124 ..      35     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-08
      BRCT_2  11 Yindaeps.psreklkklIeknGGevvetitsavyiviaesneee......laekrkrrvvspkyIkdCikkgkllpleny 84 
                 Yi++ + + +++++l  l e + G v+++ t+a++i++a s            + +++ vv+p++++d++k+g+ lp  +y
  CDO72628.1  44 YIVQGKLDvQTIAELFGLAERHAGGVCKDATEADVIITAISMRRRferhvpWGVAKNKAVVTPQWLRDSVKNGSALPCGKY 124
                 7775455558999999**************99988877777766699***99999999*******************9999 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.5e-06     0.017       5      29 ..     322     346 ..     318     370 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.5e-06
                 HTSTT--HHHHHHHHTTT--SHHHH CS
       HHH_5   5 lsvsGiGpktAlallsaGiesvedl 29 
                  sv GiGp tA++l++ G +s++dl
  CDO72628.1 322 SSVYGIGPNTARRLYNLGLRSLDDL 346
                 5889********************9 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.56   1.4e+03       3      20 ..     275     292 ..     273     312 .. 0.83
   2 !   13.9   0.0   1.9e-05     0.049       5      34 ..     318     347 ..     314     353 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.56
        Cdd1   3 kalkelqdiPniGkalae 20 
                 ++lk+ +++P iG +++ 
  CDO72628.1 275 RSLKQVEKLPFIGVKISG 292
                 67999********99976 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.9e-05
        Cdd1   5 lkelqdiPniGkalaedlvelGirsveelk 34 
                 l+ + ++ +iG+++a+ l++lG+rs+++l+
  CDO72628.1 318 LSLFSSVYGIGPNTARRLYNLGLRSLDDLE 347
                 66789999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4220.40
//
Query:       CDO72629.1  [L=408]
Description: hypothetical protein BN946_scf184985.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.35   10.5   2.9       0.57    9.8   2.9    1.3  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.9   3.2e-05      0.57      42     120 ..     328     405 ..     269     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3.2e-05
                    HHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HH.HHHHHHHHHHHHHTTT-EEEEE...........ETGGGGGGGGHHHHH CS
  FAD-oxidase_C  42 aldlveatkgakkglpdeeealllvefegdde.eeaeeelealveaileatgaadv.lvaqdeaeaealwkaRkaalpylr 120
                    a   + ++ + +k+l ++e+ l+l  +++  + eea++e+ea+ve+ +e++ a++    a++e++++ l  +R ++l++l 
     CDO72629.1 328 A---ATEQPERPKRLSQREKILMLARMHAKTPlEEAKAEVEAEVEKQAEEEQAQEQaKAAEEEEKKATLGGLRNRLLRILG 405
                    2...2333333378999999999*999999998999999999********9999972555555555699*****9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2192  (0.12226); expected 358.6 (0.02)
Passed bias filter:                      861  (0.0480228); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 2818.47
//
Query:       CDO72630.1  [L=162]
Description: hypothetical protein BN946_scf184985.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   41.4   0.0    3.1e-10   40.3   0.0    1.6  1  FLILHELTA  Hypothetical protein FLILHELTA


Domain annotation for each model (and alignments):
>> FLILHELTA  Hypothetical protein FLILHELTA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.7e-14   3.1e-10      15      88 .]      23     119 ..      10     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.7e-14
   FLILHELTA  15 rklrsapvshvtsFLiLHElTAivPllglfalfhyldleed........................eellpaalvseaveegverferylrkkgwfgfe 88 
                 ++ r+   s  +sF +LHElTAi+P++g+f+    l + e+                        ++++ +  v+e++ eg  r+er+ r+ gwfgfe
  CDO72630.1  23 KRTRTPLPSLAVSFAVLHELTAILPIVGFFYGARALGVGENivravarpqgetsqhqdgyfaryrDTWVAE-RVREWMVEGEVRAERVGRRYGWFGFE 119
                 55566667889*************************97777778888888999999999998887667777.669999*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1110.44
//
Query:       CDO72631.1  [L=136]
Description: hypothetical protein BN946_scf184985.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0023   18.6   0.0     0.0032   18.2   0.0    1.2  1  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
       0.11   12.3   0.1       0.16   11.8   0.1    1.2  1  DUF4448       Protein of unknown function (DUF4448)


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07    0.0032       2      93 .]      47     134 ..      46     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.6e-07
  GPI-anchored   2 sPssgevvtagkpvtitWkdsgtdp.....gtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                    P +g+v+  g+  ++tW++ +  p     +   ++L++g     ++   +a++ +   g  ++tvp  + ++++Y + +  +s +    +S+ Fti
    CDO72631.1  47 YPHAGTVWYKGQRHNVTWDTTN-HPvnitnKLGRIMLRKGDI---TTPLILAKDFDILLGRIEVTVPW-VIPDSDYSVVLFGDSGN----FSPEFTI 134
                   699*****************64.4534333555677777755...89999******999*******88.6678********77774....9****98 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.8e-05      0.16      26      50 ..      44      68 ..      34      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
     DUF4448 26 PFCtPkegselkvgktYyiTWdprf 50
                P   P+ g+ ++ g+ + +TWd++ 
  CDO72631.1 44 PVTYPHAGTVWYKGQRHNVTWDTTN 68
                5567******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1003.76
//
Query:       CDO72632.1  [L=349]
Description: hypothetical protein BN946_scf184985.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-21   75.7   0.1    5.8e-21   74.4   0.1    1.7  1  DNA_pol_B_thumb  DNA polymerase beta thumb
    1.3e-10   41.4   0.0    6.4e-10   39.3   0.1    2.0  2  HHH_8            Helix-hairpin-helix domain
    3.9e-10   39.4   0.0    2.2e-09   37.0   0.0    2.3  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
    2.7e-08   34.0   0.0    4.8e-08   33.2   0.0    1.4  1  DNA_pol_B_palm   DNA polymerase beta palm
    0.00099   19.3   0.0      0.009   16.2   0.0    2.3  2  Cdd1             Pathogenicity locus
     0.0016   19.0   0.0     0.0062   17.1   0.0    1.9  2  HHH_5            Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.088   13.2   0.0        2.3    8.7   0.0    2.7  2  IMS_HHH          IMS family HHH motif


Domain annotation for each model (and alignments):
>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   2.3e-24   5.8e-21       1      70 []     283     346 ..     283     346 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 2.3e-24
                      HHHHHHS-HHHHHHHHHHHHCT.TEEEETTEEE.......ETCCCEEEC-SSHHHHHHHCTS----GGGTT CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkk.glkLnssglrdekgkaeddddgelvevetErdvfelLglpyipPeeRe 70 
                      a+++++Gs +F+rdlR++ak+k g+k++ssg++       ++ d + +  +tE++vf+l+gl++++P++R+
       CDO72632.1 283 AVIGWSGSIMFQRDLRQWAKDKlGMKFDSSGIT-------RRYDSKEIHPKTEKEVFDLFGLEWVDPTWRN 346
                      89*******************************.......8999999***********************7 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   2.5e-13   6.4e-10       1      67 [.       2      66 ..       2      67 .. 0.97
   2 ?   -1.1   0.0      0.96   2.5e+03      49      62 ..      89     102 ..      75     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.5e-13
                HHHHHHHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHHHH CS
       HHH_8  1 NkeiadaLeeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakieeil 67
                N+++++ L+ + + + l+ +++  +++Y+rA + i+a+p++i+sl++ ++klp iG ki    ee+l
  CDO72632.1  2 NQDLVRELDIIRQSRALE-GEERSALSYQRALSIIKAYPDKIRSLKQ-VEKLPFIGVKISGLAEEFL 66
                99****************.899*************************.*****************98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.96
                 CTTSTT--HHHHHH CS
       HHH_8  49 ltklpgiGkkiaak 62 
                 ++++ giG+ +a++
  CDO72632.1  89 FSSVYGIGPNTARR 102
                 57889*****9986 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.8   4.7e+03      21      30 ..      41      50 ..      38      59 .. 0.74
   2 !   37.0   0.0   8.5e-13   2.2e-09       2      29 ..      88     115 ..      87     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.8
  DNA_pol_lambd_f 21 Girtledlra 30
                      ir+l+++ +
       CDO72632.1 41 KIRSLKQVEK 50
                     6899999877 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 8.5e-13
  DNA_pol_lambd_f   2 lFtkvyGVGpktAkkwyakGirtledlr 29 
                      lF++vyG+Gp tA+++y+ G+r+l+dl+
       CDO72632.1  88 LFSSVYGIGPNTARRLYNLGLRSLDDLK 115
                      8**************************8 PP

>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.9e-11   4.8e-08      32     113 ..     184     276 ..     166     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.9e-11
                     HHHTT-SEESSEEEEEEBTTBSTTSS--HHHHHHHHHHHHHTTSEEEEEE..E-SSEEEEEEE---S.................S..STS-EEEE CS
  DNA_pol_B_palm  32 SYRRgaessGDvDvlitkkdakseskklkklleklvkklkkkgfltdsLavesgeskfmGvcrlpee.................e..kkelhrRi 107
                      +RRg+ +s DvD++ t++da++     k+l +++v+kl+++g++t+ ++     s f+G   l+++                 +  ++ + rR+
      CDO72632.1 184 QHRRGKPESNDVDIVFTHPDAEK----VKGLCKRFVRKLHQRGMVTHVMH----LSGFHGHNPLRTThwdslekaltvfilpqsSpfYRGTRRRL 270
                     58******************999....68******************998....45666666666666666666666666666535688999*** PP

                     EEEEE- CS
  DNA_pol_B_palm 108 Dlklvp 113
                     Dl + p
      CDO72632.1 271 DLIFAP 276
                     *99877 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.4     1e+03       3      19 ..      43      59 ..      41      75 .. 0.85
   2 !   16.2   0.0   3.5e-06     0.009       4      35 ..      85     116 ..      82     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.4
        Cdd1  3 kalkelqdiPniGkala 19
                ++lk+ +++P iG +++
  CDO72632.1 43 RSLKQVEKLPFIGVKIS 59
                67999********9986 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.5e-06
        Cdd1   4 alkelqdiPniGkalaedlvelGirsveelkg 35 
                 +l+ + ++ +iG+++a+ l++lG+rs+++lk 
  CDO72632.1  85 TLSLFSSVYGIGPNTARRLYNLGLRSLDDLKV 116
                 57789999**********************95 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5   6.4e+03       4      11 ..      48      55 ..      29      62 .. 0.56
   2 !   17.1   0.0   2.4e-06    0.0062       5      30 ..      90     115 ..      84     130 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
                HHTSTT-- CS
       HHH_5  4 LlsvsGiG 11
                + +++ iG
  CDO72632.1 48 VEKLPFIG 55
                23333343 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.4e-06
                 HTSTT--HHHHHHHHTTT--SHHHHH CS
       HHH_5   5 lsvsGiGpktAlallsaGiesvedla 30 
                  sv GiGp tA++l++ G +s++dl+
  CDO72632.1  90 SSVYGIGPNTARRLYNLGLRSLDDLK 115
                 5889********************95 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.21   5.4e+02       4      23 ..      38      58 ..      36      65 .. 0.81
   2 ?    8.7   0.0   0.00088       2.3      14      32 .]      90     108 ..      89     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.21
     IMS_HHH  4 vkefLwpl.pitkipGiGgkl 23
                 ++++ +l  + k+p iG k 
  CDO72632.1 38 YPDKIRSLkQVEKLPFIGVKI 58
                57888889899*******886 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00088
     IMS_HHH  14 tkipGiGgklgekLeklGi 32 
                 ++++GiG+ ++ +L +lG+
  CDO72632.1  90 SSVYGIGPNTARRLYNLGL 108
                 79**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2440.41
//
Query:       CDO72633.1  [L=988]
Description: hypothetical protein BN946_scf184985.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-125  418.6   0.0   3.1e-125  417.7   0.0    1.4  1  Plavaka         Plavaka transposase
  ------ inclusion threshold ------
      0.094   12.3   0.0       0.18   11.4   0.0    1.3  1  Glyco_hydro_cc  Glycosyl hydrolase catalytic core
       0.99    9.3   3.4       0.34   10.8   0.1    1.9  2  zf-C2H2_9       C2H2 type zinc-finger (1 copy)


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.7   0.0  5.2e-129  3.1e-125       1     323 [.     221     539 ..     221     540 .. 0.97

  Alignments for each domain:
  == domain 1  score: 417.7 bits;  conditional E-value: 5.2e-129
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegeleeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweqq 99 
                 F+++  ++k+iD+lp g+++w+ e ++  g++ +e++k ++e +elw rd++++++el+gnp f+d ++yaPe++y+d++ + r+y +m+t++w+w++q
  CDO72633.1 221 FESNYLFYKKIDALPGGQASWNVEVFEAVGDRLGEDGKPRTECVELWKRDVVDCVRELMGNPLFRDVIRYAPEKQYADAEGKARIYGNMWTANWWWDVQ 319
                 889999***********************************************************************99777***************** PP

     Plavaka 100 ieekptegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkeag 198
                 ++   ++ at++p+il+sDKTtls ++g+k+a+PvYl++Gni+k+ rrk+s +a+vll+yLp+ kl+++  s++ r+l  ++lfH+c++ +l+pL +ag
  CDO72633.1 320 MQ--MPDDATIAPLILASDKTTLSRMSGDKSAWPVYLTLGNIDKNERRKPSAHATVLLGYLPVVKLECF--SDKCRSLEGYRLFHQCMRSLLAPLIAAG 414
                 44..4689*************************************************************..9*************************** PP

     Plavaka 199 kkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaade.lkklwkeyglkgviepFwedlpr 296
                 k+gv mtcadg vrrv+pilaayiaD+pEq+lva++ +++Cpkc ++++++g++  s l++ +++le+l+++a++    ++ + gl++ +epFwedlp+
  CDO72633.1 415 KEGVLMTCADGRVRRVYPILAAYIADHPEQCLVAACQENRCPKCPVDPDKRGEPVFSCLKDPDRVLEALRSVAEGeKPPEFTAWGLRA-VEPFWEDLPH 512
                 *****************************************************95569*************99765777********8.56******** PP

     Plavaka 297 adihelltpDlLHqlikgvfkdHlvkW 323
                 +di+++ltpD+LHql+kgvfkdHlv+W
  CDO72633.1 513 CDIFTALTPDILHQLHKGVFKDHLVSW 539
                 *************************** PP

>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     3e-05      0.18     182     211 ..     693     722 ..     685     739 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
  Glyco_hydro_cc 182 asqeetkeflnevlawldsqeyVeryawfg 211
                     + +++++++++++++wld+qe V+r++ + 
      CDO72633.1 693 GASNKQATYIQQMTRWLDRQEAVHRFSCYL 722
                     5677899*******************9887 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   5.6e-05      0.34       2      22 ..      10      30 ..       9      35 .. 0.90
   2 ?   -3.4   0.6       1.5     9e+03       3       9 ..     454     460 ..     453     464 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
                -B-TTT--B-SSHHHHHHHHH CS
   zf-C2H2_9  2 plCPvCevkfnswkdlseHil 22
                +lCP C  ++n+ + +s+H+ 
  CDO72633.1 10 NLCPTCGEELNTAQGVSAHLS 30
                69*****************85 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
                 B-TTT-- CS
   zf-C2H2_9   3 lCPvCev 9  
                 +CP C v
  CDO72633.1 454 RCPKCPV 460
                 7999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 6947.48
//
Query:       CDO72634.1  [L=552]
Description: hypothetical protein BN946_scf184985.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.36   11.7   7.6       0.93   10.4   7.6    1.7  1  PRKG1_interact  cGMP-dependent protein kinase interacting dom
       0.59    9.4   6.6        1.2    8.4   6.6    1.4  1  DUF4407         Domain of unknown function (DUF4407)
       0.64    7.9   4.6       0.92    7.3   4.6    1.1  1  V_ATPase_I      V-type ATPase 116kDa subunit family
       0.84    8.5  10.0        1.4    7.7  10.0    1.3  1  Paramyxo_ncap   Paramyxovirus nucleocapsid protein
        3.7    7.3   5.8         27    4.5   5.5    2.0  2  EMC3_TMCO1      Integral membrane protein EMC3/TMCO1-like
          4    7.4  10.5        6.9    6.6  10.5    1.3  1  FAM60A          Protein Family FAM60A
        6.2    6.2   8.6         11    5.5   8.6    1.3  1  PIEZO           Piezo
        9.8    4.6  11.8         13    4.2  11.8    1.1  1  Macoilin        Macoilin family


Domain annotation for each model (and alignments):
>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.6   0.00041      0.93      10      81 ..      49     118 ..      41     148 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis.eleeelkeleeLra 81 
                     ++++   kr+Le ++ke ++lk++ +klk+++     +++s +  + +e++s   + s e eee ++++  r+
      CDO72634.1  49 EDKQTAVKRKLEAMQKEYKKLKQQAKKLKTSKAG---SKTSESAGNASESSSESSSFSpESEEEDETVATTRK 118
                     45677899*******************9977543...333333334444444444444445555544444443 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.6   0.00053       1.2     119     202 ..      29     131 ..      16     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00053
     DUF4407 119 eakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake...................kkaqldaaqae 198
                 +a++ + + ++ ++++ + +e++++a +++++a ++++++l+++a+k  + + g++t+  aG+  +  +                   +k q ++a+a+
  CDO72634.1  29 AADDRSGRARKPSKKQAEINEDKQTAVKRKLEAMQKEYKKLKQQAKKLKTSKAGSKTSESAGNASESSSesssfspeseeedetvattRKHQSADATAR 127
                 33444444444477777778888899********************99999999999999999999888777777776666555555555555555555 PP

     DUF4407 199 lael 202
                 la  
  CDO72634.1 128 LAVC 131
                 5554 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.6   0.00041      0.92      60     148 ..      34     121 ..      17     163 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00041
  V_ATPase_I  60 eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeeseeeeeekeeeeeeeseeeee 148
                 + + ++p++k+ +  e++ + ++++l+ ++++++klk++ ++l+  ka  ++ ++  + ++e+++e++s + e+e+e+e+ ++++++++
  CDO72634.1  34 SGRARKPSKKQAEINEDKQTAVKRKLEAMQKEYKKLKQQAKKLKTSKAGSKTSESAGN-ASESSSESSSFSPESEEEDETVATTRKHQS 121
                 5566778888888888999999999************999999988877655555554.433333333333333322222222222222 PP

>> Paramyxo_ncap  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.0   0.00064       1.4     398     499 ..      26     129 ..      18     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00064
  Paramyxo_ncap 398 aakttddrtsravgpkqaqvsflrsdrseeeqk.raskkeekrekqsrkearesskedkkkeatdeeaaslsketlldvdttsesde.dpleskks 491
                    a +++ddr+ ra  p + q  + + +++  ++k +a +ke k+ kq+ k+ ++s+  +k++e++ + + s+s+++ +  + ++e+++   + +++s
     CDO72634.1  26 AIEAADDRSGRARKPSKKQAEINEDKQTAVKRKlEAMQKEYKKLKQQAKKLKTSKAGSKTSESAGNASESSSESSSFSPESEEEDETvATTRKHQS 121
                    66899***********99999888877776655155667777788888888888888888888888888888777777776666555145667789 PP

  Paramyxo_ncap 492 aeallklr 499
                    a+a ++l 
     CDO72634.1 122 ADATARLA 129
                    99999886 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.5     0.012        27      39      87 ..      47      95 ..      43     104 .. 0.86
   2 ?    0.3   0.0      0.22   4.9e+02     135     155 ..     159     179 ..     142     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
  EMC3_TMCO1 39 idkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsem 87
                i+ +k+++++++ +++qk++++l+++ +klk  k  ++  e +++ se 
  CDO72634.1 47 INEDKQTAVKRKLEAMQKEYKKLKQQAKKLKTSKAGSKTSESAGNASES 95
                6778899************************999999888887777765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.22
  EMC3_TMCO1 135 rglesldvrfvssiswYflcs 155
                  ++++  v+fv+s sw f +s
  CDO72634.1 159 VNVHGRAVSFVTSASWSFAIS 179
                 5679999*********99776 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  10.5    0.0031       6.9      78     166 ..      31     119 ..      22     141 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0031
      FAM60A  78 daragpglkslaklkkk..ekkesskkieekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekkrkkllekkkk 166
                 d r+g + k  +k+ +   +k+++ k + e ++k+ kk k++ k+ +++++ s++ +e++ + s+s+se+s+ s ++ee+ ++  +++ k+
  CDO72634.1  31 DDRSGRARKPSKKQAEIneDKQTAVKRKLEAMQKEYKKLKQQAKKLKTSKAGSKT-SESAGNASESSSESSSFSPESEEEDETVATTR-KH 119
                 5566666664444444421223334444445555555544433333222222222.22222222222333322222222211111111.11 PP

>> PIEZO  Piezo
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.6    0.0047        11     101     155 ..      41      98 ..      33     131 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0047
       PIEZO 101 vkarkeeekksleqlkrqmerikakqqkikkgkkeseeeelak.eeeee..eeeaeee 155
                  k++ e ++ + + +kr++e ++++++k+k+++k+ +++++ + ++e+   ++e+++e
  CDO72634.1  41 SKKQAEINEDKQTAVKRKLEAMQKEYKKLKQQAKKLKTSKAGSkTSESAgnASESSSE 98 
                 5666666666677777777777777777777755555544222122222221111111 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  11.8    0.0059        13     293     410 ..      36     148 ..       2     162 .. 0.43

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0059
    Macoilin 293 skskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaaenslpnnq 391
                    k+++k+ + ++ +++ v+ + ++ ++  ++  +++ kk ++++ags +s s++  ++s+s +ss s ++++ +++     ++++k++  +  +   
  CDO72634.1  36 RARKPSKKQAEINEDKQTAVKRKLEAMQKEYKK-LKQQAKKLKTSKAGSKTSESAGNASESSSESSSFSPESEEEDETV----ATTRKHQSADATARLA 129
                 122222222222222333333333332222222.223344444444455555555544444444444444433333332....2233444444555566 PP

    Macoilin 392 lskkdalvrLeadikkLka 410
                 +++   + rL   +++L+a
  CDO72634.1 130 VCHFRVIARLRLAVHRLRA 148
                 6666667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2244  (0.12516); expected 358.6 (0.02)
Passed bias filter:                      965  (0.0538234); expected 358.6 (0.02)
Passed Vit filter:                       171  (0.00953762); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.43
# Mc/sec: 3816.69
//
Query:       CDO72635.1  [L=166]
Description: hypothetical protein BN946_scf184985.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-18   65.9   0.0    3.5e-18   65.6   0.0    1.1  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
      7e-05   22.4   1.3    0.00011   21.8   0.1    2.0  2  DUF4219          Domain of unknown function (DUF4219)


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   3.9e-22   3.5e-18       1     111 [.      55     164 ..      55     166 .] 0.97

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 3.9e-22
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w++k++ a+a I+l i+++++ ++ + + a+evW+ L  +++  +  ++++l++++ ++ +++++ +++ i++++ +++ L +++++i+de  +
       CDO72635.1  55 WREKNNLARAEIILNIEPAQYGHT-SGTYAYEVWEELRRIHQARGFGTRMALLRNFWRMAKRPDQPMTSWIADVRRAARTLDEIDAPIEDEHTI 147
                      99*********************9.899****************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyetfvta 111
                      + l + LP+ y++++  
       CDO72635.1 148 LVLTNGLPDAYSQVIIS 164
                      ************99865 PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.2e-08   0.00011       1      25 [.       9      33 ..       9      33 .. 0.94
   2 ?   -2.4   0.1      0.45     4e+03       6      10 ..      84      88 ..      84      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-08
     DUF4219  1 LdgtNYatWklrMklyLiaqdLWev 25
                L+ +NY++W + ++++L +++LWe+
  CDO72635.1  9 LNDENYTEWIISIQALLTRKGLWEI 33
                6779*******************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.45
     DUF4219  6 YatWk 10
                Y++W 
  CDO72635.1 84 YEVWE 88
                88885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1137.10
//
Query:       CDO72636.1  [L=289]
Description: hypothetical protein BN946_scf184985.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1966.78
//
Query:       CDO72637.1  [L=871]
Description: hypothetical protein BN946_scf184985.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-09   35.2   0.0    2.3e-05   24.2   0.0    3.4  3  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00031       5.6       2      40 ..     473     510 ..     472     526 .. 0.75
   2 ?   -1.7   0.0      0.12   2.1e+03      51      92 ..     546     597 ..     542     602 .. 0.72
   3 !   24.2   0.0   1.3e-09   2.3e-05      96     135 ..     743     780 ..     691     792 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00031
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnl 40 
                 v+++DEsgf+++++++  w k G+   l+++ ++  + +
  CDO72637.1 473 VIVHDESGFHANDYQGNYWLKGGEHV-LKKKDKGWLIMV 510
                 789********************996.444444444444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.12
       DDE_3  51 afvtfeetlnaedfaeflerlletalqak..........kivlilDnasiHk 92 
                 +++++  +++  d +  +e+++e+ ++a+           i+ i Dn s H 
  CDO72637.1 546 RVTIYPSSRKGSDNYWNMEQMIEQLQNAIpiahrlfpnaVIHWIFDNSSCHG 597
                 5566666677777777777777777777777778888778888999999986 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 1.3e-09
       DDE_3  96 lrelveeeadrlellylPpySPelNpiEivwsklkrellk 135
                 l++++e+  ++ + ++lP+  PelNpiE  w++ k+++++
  CDO72637.1 743 LEQVIEQ--AGDVCHFLPKFHPELNPIEYYWGWAKNYFRE 780
                 5666777..88899**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5792.87
//
Query:       CDO72638.1  [L=302]
Description: hypothetical protein BN946_scf184985.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-26   91.8   0.2    6.3e-26   91.4   0.2    1.1  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    4.3e-21   74.9   0.0    8.8e-21   73.9   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    3.9e-06   27.5   0.0    7.3e-06   26.6   0.0    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.5e-05   24.6   0.3    0.00017   21.9   0.3    2.0  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.2   1.4e-29   6.3e-26       1     140 [.     139     278 ..     139     285 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 1.4e-29
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfas 96 
                    g+G+ +    ln+ R ++ ++a+g+++ ++ ++++ya +r++fg+pl+++qlv++kl++ ++e++   l+ +++ ++ d+gk ++  +sm+K   +
     CDO72638.1 139 GQGLGAPFGCLNNARYGISWGAMGALEDCVHRTRAYALERQQFGRPLASFQLVQKKLVDAHTEATFGLLASLQVGRLKDEGKVAPEMISMVKRNNC 234
                    5788888899************************************************************************************** PP

                    HHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHH CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGyleeypverlyrdarvlrigeGtsei 140
                      a e a++ +++lGg+++++ey+v r++ + +v   +eGt  +
     CDO72638.1 235 GKALEHARRVLDILGGNACSDEYHVGRHVANLQVVNTYEGTYAM 278
                    *****************************************766 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0     2e-24   8.8e-21       1      97 []      36     128 ..      36     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2e-24
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfed 96 
                    +f+lTEp++Gsd a+++tta+e dg ++v+nG+K+wi+na+ a++++++ar   +  +++++ f+++++++g+s   i++kl+lr   tg +++++
     CDO72638.1  36 CFGLTEPNHGSDPAGMETTATEVDG-GFVINGAKTWISNAPVADVFIIWAR--CKW-DGKVRGFILEKGMKGLSAPAIKNKLALRCSLTGSIFLDN 127
                    9*****************7777777.8************************..455.699*************************99899999998 PP

                    . CS
  Acyl-CoA_dh_M  97 v 97 
                    v
     CDO72638.1 128 V 128
                    7 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.6e-09   7.3e-06      82     113 .]       1      32 [.       1      32 [. 0.95

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.6e-09
                    HHHHHHTTHHHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  82 lgvhsslvapailrfGteeqkrryLpklasge 113
                    ++v+sslv+++i+++Gt++qk++yLp la+g+
     CDO72638.1   1 MSVQSSLVMHPIYAYGTQAQKDKYLPLLAKGK 32 
                    689**************************995 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   3.7e-08   0.00017       3     131 ..     156     274 ..     154     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.7e-08
                    HHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaav 98 
                    i+  a Ga++ ++  + ++a er++  +g++la ++ +q +l +a ++     +  +++ +      +++ +v++e+    +r+       a +++
     CDO72638.1 156 ISWGAMGALEDCVHRTRAYALERQQ--FGRPLASFQLVQKKLVDAHTEATFGLLASLQVGRL-----KDEGKVAPEMISMVKRNN---CGKALEHA 241
                    666789*******************..*****************999865544444444444.....455555677666555554...57889999 PP

                    HHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGG CS
  Acyl-CoA_dh_2  99 dalfeaaGgsalrkesplqRlwRDahaaaaHaa 131
                    +++ ++ Gg+a+ +e+++ R+  ++++++++++
     CDO72638.1 242 RRVLDILGGNACSDEYHVGRHVANLQVVNTYEG 274
                    9****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2119.87
//
Query:       CDO72639.1  [L=379]
Description: hypothetical protein BN946_scf184985.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00018   22.0   4.7    0.00038   21.0   4.7    1.4  1  Fez1             Fez1
     0.0026   17.8   2.2      0.027   14.6   2.2    2.2  1  Med9             RNA polymerase II transcription mediator com
     0.0064   16.3  10.8      0.011   15.5  10.8    1.3  1  ERM              Ezrin/radixin/moesin family
     0.0085   15.6   1.7      0.013   15.0   1.7    1.2  1  Allexi_40kDa     Allexivirus 40kDa protein
  ------ inclusion threshold ------
      0.013   15.6   1.2      0.024   14.8   1.2    1.4  1  COG5             Golgi transport complex subunit 5
      0.026   13.7   1.2       0.04   13.1   1.2    1.2  1  SPESP1           Sperm equatorial segment protein 1
       0.06   13.5   1.7       0.13   12.4   1.7    1.5  1  DUF4449          Protein of unknown function (DUF4449)
      0.067   12.1   8.1        0.1   11.5   8.1    1.2  1  Spc7             Spc7 kinetochore protein
        0.1   12.8   5.9       0.23   11.7   5.9    1.6  1  Cnn_1N           Centrosomin N-terminal motif 1
       0.16   10.5   2.4       0.22   10.1   2.4    1.1  1  FapA             Flagellar Assembly Protein A
        1.3    9.0   8.6       0.44   10.5   2.7    2.2  2  Prefoldin        Prefoldin subunit
        1.4    9.1   6.0       0.66   10.1   1.9    2.3  2  Swi5             Swi5
        1.8    9.1   8.8          7    7.2   3.7    2.8  2  DUF4140          N-terminal domain of unknown function (DUF41
        2.4    8.2  10.4        9.7    6.2  10.4    1.8  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
        3.5    8.1   8.9        1.8    9.0   0.2    2.7  2  Snapin_Pallidin  Snapin/Pallidin
        3.6    8.1  14.2         10    6.6  14.2    1.7  1  APG6_N           Apg6 coiled-coil region
        5.1    7.5   7.4         18    5.7   0.5    2.5  2  TSC22            TSC-22/dip/bun family
        5.3    7.7  10.2        3.5    8.3   2.7    2.7  3  YabA             Initiation control protein YabA


Domain annotation for each model (and alignments):
>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   4.7   3.8e-07   0.00038       7     119 ..       9     115 ..       8     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.8e-07
        Fez1   7 QksGEis.lLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreels 104
                 Q +GE + +L  QLk+++ ++ + ++e + lkaq+  +  +l++     ++++es+e+ ++ele+++nel+ +++eae++ +++++    ++  +++ +
  CDO72639.1   9 QLTGEFAnFLNAQLKECREQLRRITEENILLKAQVDAI--ELRQPSVVESDVQESIENLEAELEELKNELSVAREEAEIKAQEATTWRMRCEAAQSSTA 105
                 66889874799***********************9765..79999999999999999999999999999999999999888865555554444444433 PP

        Fez1 105 elsleeeeaalesde 119
                 e     ++  l+ ++
  CDO72639.1 106 E-----RQVDLKRTA 115
                 3.....333333333 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.2   2.7e-05     0.027      28      68 ..      15      78 ..       2      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-05
        Med9 28 tgelrhkLkkarelirelpg.......................idrsveeqeaeieeleeqlak 68
                +++l+ +Lk++re++r + +                       +++s+e+ eae+eel+++l  
  CDO72639.1 15 ANFLNAQLKECREQLRRITEenillkaqvdaielrqpsvvesdVQESIENLEAELEELKNELSV 78
                799*********************************************************9976 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  10.8   1.1e-05     0.011      36     133 ..      23     118 ..      16     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
         ERM  36 elLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekllealstp 133
                 ++  e++rr  ee  lL+++  ++e         +++ +e+ e+le++l+e + e++  +ee e k++ea++++++ e+a+ +  e +  l++ +++ 
  CDO72639.1  23 KECREQLRRITEENILLKAQVDAIELRQP--SVVESDVQESIENLEAELEELKNELSVAREEAEIKAQEATTWRMRCEAAQSSTAERQVDLKRTAAKD 118
                 56679999999999999988887765544..555667889999*****************************************99998888877665 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.7   1.3e-05     0.013      77     151 ..      19      92 ..       9     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
  Allexi_40kDa  77 ttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsss 151
                   +++L e r++lr++t++   lk++ + +el++ +  +s++++++e +e +leel+++l  ++++e++ +++  ++
    CDO72639.1  19 NAQLKECREQLRRITEENILLKAQVDAIELRQPSVVESDVQESIENLEAELEELKNELS-VAREEAEIKAQEATT 92 
                   6799******************************************************4.444444444333332 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.2   2.4e-05     0.024      38     110 ..      18      91 ..       5     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHH CS
        COG5  38 lnydiqeldkrlrqlitsnhleLlehlskskslss..vlselksslesLsasyerlkskvlepyeeaeklqsalk 110
                 ln  ++e++++lr+++  +   L ++++ ++  +   v s++++s+e+L+a +e lk++++   eeae + +++ 
  CDO72639.1  18 LNAQLKECREQLRRITE-ENILLKAQVDAIELRQPsvVESDVQESIENLEAELEELKNELSVAREEAEIKAQEAT 91 
                 78899*******98665.5567889999988766556899************************99997766665 PP

>> SPESP1  Sperm equatorial segment protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.2     4e-05      0.04     183     267 ..       8      95 ..       4     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
      SPESP1 183 PqLsGesei.ekle.dlfgkhsqslnnediLkkisdinsqvqqvlLsdslkpeyredikasrehLkrslaLa.aaaehkLekmYksql 267
                 PqL Ge++   +++ ++  ++ + +++e+iL k      +++q ++ +s  +e  e+++a  e+Lk  l++a + ae k ++    ++
  CDO72639.1   8 PQLTGEFANfLNAQlKECREQLRRITEENILLKAQVDAIELRQPSVVESDVQESIENLEAELEELKNELSVArEEAEIKAQEATTWRM 95 
                 9****98641444546778888999********999999*******************************994468888777655555 PP

>> DUF4449  Protein of unknown function (DUF4449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.7   0.00013      0.13      37     106 ..      53     119 ..      47     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
     DUF4449  37 alekqirdaleklDaelyevkqeaerakeeaksdpenapniysryldalkkkftkkkekaeekekakkad 106
                 ++e  +++++e+l+ael e+k+e   a+eea+  + ++++ ++ + +a++ +  +++ + +++  a+k++
  CDO72639.1  53 VVESDVQESIENLEAELEELKNELSVAREEAEI-KAQEATTWRMRCEAAQSSTAERQVDLKRT--AAKDE 119
                 7999*********************99999999.777889***********988888777773..34443 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   8.1    0.0001       0.1     157     251 ..      17     112 ..       2     132 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
        Spc7 157 lLekqeeeldellpeleeekaeleeeleklqeaaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeia 251
                  L++q +e  e l +++ee   l+++++ ++ ++ ++ ++d +e++e+l  el+elk+e++  ++e + + ++ ++ + + e+++++ +e + +++
  CDO72639.1  17 FLNAQLKECREQLRRITEENILLKAQVDAIELRQPSVVESDvQESIENLEAELEELKNELSVAREEAEIKAQEATTWRMRCEAAQSSTAERQVDLK 112
                 355555556666666666666666666666666666655666666666666666666666666666666666666666666666665555554444 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.9   0.00023      0.23       2      61 ..      22      85 ..      21      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
      Cnn_1N  2 lrEqeeqidkLkKENFdLKLriyfLeerleklse....eqkeellkenielkveveslqkelke 61
                l+E  eq+ +++ EN  LK ++   e r+    e    e++e+l++e+ elk e+   + e + 
  CDO72639.1 22 LKECREQLRRITEENILLKAQVDAIELRQPSVVEsdvqESIENLEAELEELKNELSVAREEAEI 85
                8**********************99999999888888899999999999999999888887654 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4   0.00022      0.22     335     407 ..      18      89 ..       4     128 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
        FapA 335 lkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkee 407
                 l+++lke++e+l+++ ee   lk++++ ++  ++++ +es+ +e++++l+ ++e+lk+el+  +ee +   +e
  CDO72639.1  18 LNAQLKECREQLRRITEENILLKAQVDAIEL-RQPSVVESDVQESIENLEAELEELKNELSVAREEAEIKAQE 89 
                 3445555555555555555555555444444.44555666666666666666666666665555555533333 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.25   2.4e+02      81     111 ..      17      47 ..      13      49 .. 0.87
   2 ?   10.5   2.7   0.00044      0.44      71     118 ..      54     101 ..      52     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  81 llkkkleelekqlekleeeleklkdqittle 111
                 +l+ +l+e ++ql+ ++ee   lk+q++ +e
  CDO72639.1  17 FLNAQLKECREQLRRITEENILLKAQVDAIE 47 
                 7899999999999999999999999998876 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00044
                 EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  71 veksleeAiellkkkleelekqlekleeeleklkdqittleanlaqly 118
                 ve +++e+ie l+ +leel++ l +  ee+e +++++tt ++ +++ +
  CDO72639.1  54 VESDVQESIENLEAELEELKNELSVAREEAEIKAQEATTWRMRCEAAQ 101
                 8999***********************************999988766 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.95   9.5e+02       2      27 ..      19      44 ..      18      54 .. 0.75
   2 ?   10.1   1.9   0.00067      0.66       2      35 ..      59      92 ..      58     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.95
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Swi5  2 eaeikeleeqleelekelaelkeelk 27
                +a++ke++eql+++ +e   lk++ +
  CDO72639.1 19 NAQLKECREQLRRITEENILLKAQVD 44
                57788888888888888887777765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00067
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHH CS
        Swi5  2 eaeikeleeqleelekelaelkeelkekkdpeet 35
                +++i++le++leel++el+ ++ee + k++ ++t
  CDO72639.1 59 QESIENLEAELEELKNELSVAREEAEIKAQEATT 92
                789*********************9998854444 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.6     0.049        49      70      97 ..      18      45 ..       5      46 .. 0.87
   2 ?    7.2   3.7    0.0071         7      67      96 ..      55      84 ..      39      93 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.049
     DUF4140 70 lraeleeledelaaledelaaaearlaf 97
                l+a+l+e++++l+++++e   ++a+ ++
  CDO72639.1 18 LNAQLKECREQLRRITEENILLKAQVDA 45
                899***************9999999765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0071
     DUF4140 67 lkalraeleeledelaaledelaaaearla 96
                 + +++++e+le+el++l++el++a+++ +
  CDO72639.1 55 ESDVQESIENLEAELEELKNELSVAREEAE 84
                345666666666666666666666666544 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.4    0.0097       9.7      61     152 ..      37     122 ..      16     131 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0097
     UPF0242  61 lkeklekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellq 152
                 + +k +   +e ++  ++e d      +e++e+l++e eeLk+el+   ee e   +e    +++ ea++   +e + +l+ + a+  el+ 
  CDO72639.1  37 ILLKAQVDAIELRQPSVVESD-----VQESIENLEAELEELKNELSVAREEAEIKAQEATTWRMRCEAAQSSTAERQVDLKRTAAK-DELFV 122
                 333345556666666666666.....7789**************************************999999988888877544.44444 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2    0.0018       1.8       2      38 ..       9      45 ..       8      50 .. 0.93
   2 ?    3.5   1.4     0.099        98      32      51 ..      58      77 ..      52     108 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0018
  Snapin_Pallidin  2 aLaegllellepkldeldeklkelrqsQeeLleqldr 38
                     +L+ ++ + l  +l+e++e+l+ ++++   L++q+d 
       CDO72639.1  9 QLTGEFANFLNAQLKECREQLRRITEENILLKAQVDA 45
                     68999*****************************995 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.099
  Snapin_Pallidin 32 LleqldrlnekLkeleeaqe 51
                     ++e++++l ++L+el+++ +
       CDO72639.1 58 VQESIENLEAELEELKNELS 77
                     45666666666666665544 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  14.2      0.01        10      33     118 ..      27     110 ..      13     119 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
      APG6_N  33 kklkkekkeeekqdeeleeleee............leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne.lqlelleleee 118
                 ++l++                ee            l++ +  e++ +e +++le+e eel++el+ ++ee ++++++e+  wr + e  q   +e + +
  CDO72639.1  27 EQLRRI--------------TEEnillkaqvdaieLRQPSVVESDVQESIENLEAELEELKNELSVAREE-AEIKAQEATTWRMRCEaAQSSTAERQVD 110
                 333333..............2222222223333449999999**********************977665.5677888999998887566666666555 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.5     0.019        18      19      48 ..      18      47 ..      13      55 .. 0.83
   2 ?    4.7   1.4     0.039        39      12      39 ..      58      85 ..      56     102 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
       TSC22 19 LkekIkeLeernseleeENslLkalaspeq 48
                L  + ke  e+ +++ eEN lLka++    
  CDO72639.1 18 LNAQLKECREQLRRITEENILLKAQVDAIE 47
                778999*****************8876555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.039
       TSC22 12 VrEeVevLkekIkeLeernseleeENsl 39
                V+E +e+L  +  eL ++ s  +eE ++
  CDO72639.1 58 VQESIENLEAELEELKNELSVAREEAEI 85
                6777777777777777777777777665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.3     0.093        92      20      48 ..      18      46 ..       9      58 .. 0.79
   2 ?    8.3   2.7    0.0035       3.5      12      69 ..      57     114 ..      51     137 .. 0.82
   3 ?   -2.5   0.0       8.1   8.1e+03      60      80 ..     264     284 ..     246     285 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.093
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 20 lleeleelkeelaelleenaeLelenekl 48
                l+++l+e +e+l +++een  L+++ + +
  CDO72639.1 18 LNAQLKECREQLRRITEENILLKAQVDAI 46
                67899999999999999999998876654 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXX CS
        YabA  12 eleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelseg 69 
                 +++e++e+l +eleelk+el+   ee +    e ++ r r e ++++++e++ +l+++
  CDO72639.1  57 DVQESIENLEAELEELKNELSVAREEAEIKAQEATTWRMRCEAAQSSTAERQVDLKRT 114
                 678999**************99999988888899999999977777777777666554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.1
                 XXXXXXXXXXXXXXXXXXXXX CS
        YabA  60 kekkkelsegkenLarlYeeG 80 
                 k+++++ ++    L++lYe+G
  CDO72639.1 264 KTQRAKGKTYLPVLRELYEKG 284
                 222233333345678899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2407.29
//
Query:       CDO72640.1  [L=105]
Description: hypothetical protein BN946_scf184985.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   34.3   0.0    2.8e-08   34.0   0.0    1.1  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.6e-12   2.8e-08       8      87 ..      11      90 ..       5      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.6e-12
                EE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEE.EEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEE CS
        YCII  8 ydkpasleeraallaahlayleelkkeGvllaa.GpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlve 87
                y +p+++++r a+++ hla   + k+ +v  a+  p+++ d p+ae k ++g+f+++e+++ + a+++++ d +++++++ 
  CDO72640.1 11 YTDPEAVQRRLAVRESHLAAAAQNKAIKVGGAMlSPNEALDKPDAE-KKMIGSFMVIECDTYADARKMIESDIYWTSNVWD 90
                7789999**************999998887777789999999**97.99*************************9999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 796.11
//
Query:       CDO72641.1  [L=229]
Description: hypothetical protein BN946_scf184985.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-13   48.4   0.0    1.2e-12   48.0   0.0    1.2  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   6.8e-17   1.2e-12       3     110 ..     118     222 ..     116     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 6.8e-17
                  EEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEE...EEEEGGGHHHS.TTEEEEEEEETTEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggk...vyvksyslvfldeglvldfvedlgtlg 95 
                  + +t++Aae+l+++ + ++ +  lr++v+ gg       C+ g++y+l+l +++ e++d ++++  +k   +yv+  s+ +l +g ++df ++l +++
   CDO72641.1 118 LDMTDRAAEQLRAVAQREGPDaaLRIAVESGG-------CH-GYQYKLELAKNK-EPDDYHFSHPRIKpsnIYVDAVSMSLL-KGSTIDFATELIGSS 205
                  679**************99999**********.......**.************.9999999988775445***********.9************** PP

                  EE.EETCCEEEE.EEEE CS
  Fe-S_biosyn  96 Lk.sdngilddn.vglg 110
                  ++  dn+ ++++ +g+g
   CDO72641.1 206 FRvVDNPQAKGSgCGCG 222
                  *9899*99997547765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1857.82
//
Query:       CDO72642.1  [L=198]
Description: hypothetical protein BN946_scf184985.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1532.01
//
Query:       CDO72643.1  [L=488]
Description: hypothetical protein BN946_scf184985.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 3900.92
//
Query:       CDO72644.1  [L=191]
Description: hypothetical protein BN946_scf184985.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1344.06
//
Query:       CDO72645.1  [L=334]
Description: hypothetical protein BN946_scf184985.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-08   34.6  11.4    1.5e-08   34.6  11.4    2.0  2  bZIP_1      bZIP transcription factor
    3.8e-06   26.9  12.4    3.8e-06   26.9  12.4    2.6  2  bZIP_2      Basic region leucine zipper
  ------ inclusion threshold ------
       0.49   11.2   6.6        1.1   10.1   6.6    1.6  1  KIAA1430    KIAA1430 homologue
          2    8.4  17.3        2.5    8.0  17.3    1.1  1  TFIIA       Transcription factor IIA, alpha/beta subunit
        2.9    6.4   5.7        4.3    5.8   5.7    1.2  1  FapA        Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6  11.4   4.2e-12   1.5e-08       5      57 ..     199     251 ..     197     254 .. 0.92
   2 ?   -1.2   0.7      0.62   2.2e+03      28      39 ..     266     277 ..     261     296 .. 0.49

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 4.2e-12
                 XXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 KrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkeve 57 
                 Kre r+ kNR aA  sRqRK++e e+ e rv++Le+eN+ L   +++ + +++
  CDO72645.1 199 KREARLVKNRAAAFLSRQRKREEFENMEIRVAELEQENARLLALAQQSQQQSK 251
                 9**************************************99998888877765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHH CS
      bZIP_1  28 ieeLerrvkaLe 39 
                 +e+L r+ ++ +
  CDO72645.1 266 VEQLRRQLAETQ 277
                 333333333333 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  12.4   1.1e-09   3.8e-06       5      49 ..     199     248 ..     197     253 .. 0.83
   2 ?   -2.5   4.2       1.6   5.9e+03      42      51 ..     267     276 ..     261     294 .. 0.56

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.1e-09
                 XXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH....HHHHH CS
      bZIP_2   5 yrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqL....rqkve 49 
                 +re R  kNr+Aa  sR++k+++ e++e rv eLe+eNa+L    +q ++
  CDO72645.1 199 KREARLvKNRAAAFLSRQRKREEFENMEIRVAELEQENARLlalaQQSQQ 248
                 5677888**********************************664333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHH CS
      bZIP_2  42 aqLrqkveqL 51 
                 +qLr+++++ 
  CDO72645.1 267 EQLRRQLAET 276
                 4444444433 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.6    0.0003       1.1      15      83 ..     208     288 ..     197     302 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
    KIAA1430  15 kapkkpshlskkkkklqlee..erlkeiereNqiLleklseimrrkgk.............kksassqsqksktaskslnaenr 83 
                 +a   +++ls+++k++++e+   r++e e+eN +Ll   ++ ++++++              ++ ++q  ++++++  l+a+ r
  CDO72645.1 208 RA---AAFLSRQRKREEFENmeIRVAELEQENARLLALAQQSQQQSKSqaapqpdpsllseVEQLRRQLAETQKRERELAAKLR 288
                 33...34556666666665533899***********765555555533555555555555444444444444444444444444 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  17.3   0.00069       2.5      60     264 ..      95     312 ..      72     333 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00069
       TFIIA  60 fvlqlpqslkqalqasaaaa..........sqapastsqslpslvipagksvqslta......nssaataatfslpakleppvqipagvtlqtasgqly 142
                 +v++ +  +++        +           ++p++++q lp    +++   +   +      +++ at ++ s+ +  + p   p+++ +++a+g+  
  CDO72645.1  95 QVFDFAPGANPGTP-----DmaasspasspDSSPQTQAQPLPHRGTATH-RSS---SfsasssSTRGATPSAGSVVVPAKRPSVGPTSTATKKARGERI 184
                 33333333333222.....022222322223333333333333333322.222...1233555666677777777777788888889999999999666 PP

       TFIIA 143 kvnv............qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqa. 228
                 +v+             +a+  +++aa+ l  + + ++ ++ +  va+l++++  + ala+++qq++k+q+  q  ++ + +  + + q +e q++++  
  CDO72645.1 185 TVKDfvppdvtglskrEARLVKNRAAAFLSRQRKREEFENMEIRVAELEQENARLLALAQQSQQQSKSQAAPQPDPSLLSEVEQLRRQLAETQKREREl 283
                 555566777787777888888888888887775555555556677777777666666666666633222222222222222233333332333322221 PP

       TFIIA 229 sqe....qvagsqvessqtdgaedaleeespvlegelsae 264
                   +    + + ++v+++q  +a+           g++ + 
  CDO72645.1 284 AAKlraeEEEAAAVQAEQGRKAD-----------GVKVEA 312
                 11122211111222222222222...........222222 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.7    0.0012       4.3     341     432 ..     217     313 ..     198     330 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
        FapA 341 eleeeleeleeeleklkkk...ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikvnk.eiypgvkikig 432
                 + +ee e++e ++ +l+++   +  l + ++++  ++   +   +ll + e+l+++l+e +++  el ++l+  +eea  +++++ +  +gvk++ +
  CDO72645.1 217 RKREEFENMEIRVAELEQEnarLLALAQQSQQQSKSQAAPQPDPSLLSEVEQLRRQLAETQKRERELAAKLRAEEEEAaAVQAEQgRKADGVKVEAD 313
                 4444444444444444444333222222122222233333334455555566666666666666666666666655555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2020  (0.112667); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2258.83
//
Query:       CDO72646.1  [L=700]
Description: hypothetical protein BN946_scf184985.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-53  182.4   3.6    1.7e-53  182.0   3.6    1.1  1  ABC_membrane  ABC transporter transmembrane region
    2.8e-31  108.9   0.0    7.7e-31  107.4   0.0    1.8  2  ABC_tran      ABC transporter
    2.5e-06   27.1   0.1     0.0014   18.1   0.0    2.3  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00031   20.1   0.0    0.00095   18.5   0.0    1.8  1  Zeta_toxin    Zeta toxin
    0.00064   20.1   1.3     0.0053   17.1   0.4    3.0  2  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.036   13.8   0.0        0.1   12.3   0.0    1.8  1  AAA_29        P-loop containing region of AAA domain
      0.048   13.7   0.0      0.099   12.7   0.0    1.4  1  DUF87         Helicase HerA, central domain
      0.059   13.3   0.4       0.25   11.3   0.0    2.2  3  RsgA_GTPase   RsgA GTPase
      0.076   12.8   0.2        1.5    8.6   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
       0.17   12.1   0.4        1.4    9.2   0.4    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   3.6   9.7e-57   1.7e-53       2     269 ..     112     380 ..     111     385 .. 0.97

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 9.7e-57
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSC CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpet..ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtns 96 
                    ++i l++++ ++s+ +p+ +g+++d++++++ +      l + s llll++   ++++ ++ +l+   g+r++ rlr +++ + lrq+++f + + 
    CDO72646.1 112 GIAIGLLFVSSAVSMSVPFTIGKLIDFFTTTNPQIPfgLSLGQASALLLLMFTTGAAANAGRAMLMRLSGQRIVARLRERTYAAALRQEVEFVE-KG 207
                   68999************************9888877999****************************************************987.69 PP

                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                    G++lsrl+ d s + ++++++l++ ++s+++  +gl+ mfy+++ ltl++l ++p + l ++++++ lkkl+++ q+a++++++va+E+ls++rtV
    CDO72646.1 208 EGDVLSRLSVDSSIVGESVTQNLSDGLRSIVMASAGLGAMFYISPTLTLLMLTVVPPVSLGAVFYGRYLKKLSNRTQEALGDMTKVAQEALSALRTV 304
                   9************************************************************************************************ PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfai 269
                   +af++ ++++ekf+++++++++ ++k aia+g+++g+t   g++  ++ l +G+tlv++g++svgdl+ +l++  +
    CDO72646.1 305 QAFNAAPQEQEKFHQKVTTVLTLARKEAIASGIFFGATGWSGNVTLLALLGYGGTLVSKGTISVGDLTSLLLYTVY 380
                   ******************************************************************9999888765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.2   1.6e+04      98     117 ..     218     238 ..     194     241 .. 0.69
   2 !  107.4   0.0   4.3e-34   7.7e-31       1     137 []     449     595 ..     449     595 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.2
                 TCBGESTTS.GGS-HHHHHHH CS
                 xxxxxxxxx.xxxxxxxxxxx RF
    ABC_tran  98 kdtvvkssp.ssLSgGqkqrv 117
                 + ++v++s  ++LS G ++ v
  CDO72646.1 218 DSSIVGESVtQNLSDGLRSIV 238
                 345565555688999988766 PP

  == domain 2  score: 107.4 bits;  conditional E-value: 4.3e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 lk+++l++  ge va+vG++G+GKS++ +ll++ ++p +G++++dg+d++e + +s+r+ igv+pq+p lf ++ +++n       + +e+ie+a+++ 
  CDO72646.1 449 LKDLNLEVAMGESVAVVGQSGSGKSSINALLMRYYDPVKGKVTFDGQDIREFKPSSWRSIIGVVPQDPILFTGT-IASNiaygnpnATREQIEAAAREA 546
                 799***********************************************************************.99999***9998888899999999 PP

                 TTGG......TTCBGESTTS....GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxx......xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke......lkdtvvkssp....ssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +               ++    +sLSgGq+qr+a+arallkkp +l lDE+t+
  CDO72646.1 547 NCEFvwgmpqG------FDTeisrASLSGGQRQRLAIARALLKKPAILALDEATS 595
                 98885544332......33333449****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0025       4.5      26      41 ..     461     476 ..     446     482 .. 0.83
   2 !   18.1   0.0   7.8e-07    0.0014     130     210 ..     560     638 ..     554     646 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0025
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                   a+vG+ GSGKs++ 
  CDO72646.1 461 SVAVVGQSGSGKSSIN 476
                 4689**********95 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 7.8e-07
                 TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH..HCTTSEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke..ksknaQfivislreemlekadklvg 210
                 ++is+ +LSgG+++ +a+a        k+ ++  lDe  + LD++  ++v + +++  +  ++  +++++r  ++++a+++v 
  CDO72646.1 560 TEISRASLSGGQRQRLAIAR----ALLKKPAILALDEATSSLDATSEHRVNDAIDKilRGRQTTCLIVAHRLSTIARAERIVV 638
                 5789999******9766653....456777899*********************972245566789************99875 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.3e-07   0.00095      18      60 ..     461     503 ..     447     515 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.3e-07
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60 
                 ++ ++Gq+G+GKs++ +ll ++ ++ ++ v++d+ d+Re+ P 
  CDO72646.1 461 SVAVVGQSGSGKSSINALLMRYYDPVKGKVTFDGQDIREFKPS 503
                 67899***********************************995 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   2.6e+03      82     132 ..     276     330 ..     264     339 .. 0.60
   2 !   17.1   0.4     3e-06    0.0053      12     127 ..     449     613 ..     442     692 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
      AAA_16  82 lrqlldeaesaeleawrekleeala.....avpelagaeasrllellkrllallsr 132
                 l++l +++++ +l++  +  +eal+     ++ ++a++e + ++++++  l l+++
  CDO72646.1 276 LKKLSNRTQE-ALGDMTKVAQEALSalrtvQAFNAAPQEQEKFHQKVTTVLTLARK 330
                 5555555444.444444444444443444434445555558888888888888776 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3e-06
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde...........aesaeleawre 99 
                 L+++   v++g  e+v ++G+sG+GKss+   l+r++   +g + + + ++ ++  p s + +++        + ++            +  +++a re
  CDO72646.1 449 LKDLNLEVAMG--ESVAVVGQSGSGKSSINALLMRYYDPVKGKV-TFDGQDIREFKP-SSWRSII------GVVPQDpilftgtiasnIAYGNPNATRE 537
                 54444467777..79**************999998665553333.222222211222.2222222......2222222223334443366667777777 PP

      AAA_16 100 kleeala................................................avpelagaeasrllellkrll 127
                 ++e+a++                                                a+++l++ +++r+++++ ++l
  CDO72646.1 538 QIEAAAReancefvwgmpqgfdteisraslsggqrqrlaiarallkkpailaldeATSSLDATSEHRVNDAIDKIL 613
                 7777777777888888888888877554444444444444455555554444444444444444455555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05       0.1      17      38 ..     454     475 ..     445     480 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTl 38 
                 +e+ + +++ ++G+sGsGKS++
  CDO72646.1 454 LEVAMGESVAVVGQSGSGKSSI 475
                 667766799***********97 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.5e-05     0.099      16      45 ..     452     481 ..     442     484 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
       DUF87  16 ldlnklvtrHlAilgsTGsGKSntvavLle 45 
                 l+l+ +  +++A++g++GsGKS   a+L++
  CDO72646.1 452 LNLEVAMGESVAVVGQSGSGKSSINALLMR 481
                 6777788999*************9999986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.6   8.3e+03     112     132 ..      75      96 ..      75      98 .. 0.81
   2 ?   11.3   0.0   0.00014      0.25      89     119 ..     448     478 ..     435     493 .. 0.75
   3 ?   -1.9   0.1       1.6   2.8e+03     119     142 ..     597     620 ..     594     629 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.6
                  HHHHHHHHCT.T-----S---- CS
  RsgA_GTPase 112 KStLinallp.elelktgevse 132
                  K +L+ +l+p +++ kt++vs+
   CDO72646.1  75 KKSLLSRLVPpDAQDKTKSVSS 96 
                  6789999998678899999986 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinal 119
                   l++l+ +++  + +++vGqSG GKS++  al
   CDO72646.1 448 ILKDLNLEVAMgESVAVVGQSGSGKSSIN-AL 478
                  5666666665558999***********64.44 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
                  HCTT-----S-------------- CS
  RsgA_GTPase 119 llpelelktgevseklgrGkhTTt 142
                  l+ + e ++++  +k  rG+ TT 
   CDO72646.1 597 LDATSEHRVNDAIDKILRGRQTTC 620
                  66677889999999999*****96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.088   1.6e+02       3      15 ..     463     475 ..     461     503 .. 0.89
   2 ?    8.6   0.0   0.00083       1.5     219     282 ..     538     609 ..     489     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.088
      AAA_21   3 vliGpNgsGKSnL 15 
                 +++G  gsGKS++
  CDO72646.1 463 AVVGQSGSGKSSI 475
                 79*********97 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00083
      AAA_21 219 r...........gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell 282
                             +v+ +  g++ e++ ++lS G+++ la++ all  +   ++l++DE  ++L+    +r+ + +
  CDO72646.1 538 QieaaareanceFVWGMPQGFDTEISRASLSGGQRQRLAIARALLKKP---AILALDEATSSLDATSEHRVNDAI 609
                 244455556677999999*******************99999999766...*******99999976665555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4    0.0008       1.4      62      88 ..     583     609 ..     551     611 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0008
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllell 88 
                 +++++++LDEA s+lD++s +++ +++
  CDO72646.1 583 KKPAILALDEATSSLDATSEHRVNDAI 609
                 4589*************9988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 4173.90
//
Query:       CDO72647.1  [L=119]
Description: hypothetical protein BN946_scf184985.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-09   36.9   0.0      5e-09   36.5   0.0    1.2  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.8e-13     5e-09       8      90 ..      19     102 ..      12     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.8e-13
                 EE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSC....SSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEEEE CS
        YCII   8 ydkpasleeraallaahlayleelkkeGvllaaGpklvid....GpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveere 90 
                  d p+   +ra++++ah++    l ++Gvl ++G+ l+ +    +p+a  k+  g+ + v+a++l+ea ei+++dPf+++G v +r 
  CDO72647.1  19 LDVPN--AQRAKHYEAHVKLSMPLIEKGVLRLGGALLAPTakssDPDA-LKNPKGSWIFVQAESLEEAWEIVKQDPFYASGEVWDRD 102
                 45566..68************************766554411114555.69999***************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 903.06
//
Query:       CDO72648.1  [L=119]
Description: hypothetical protein BN946_scf184985.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-08   32.6   0.0    1.1e-07   32.2   0.0    1.1  1  YCII      YCII-related domain
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.15   12.5   0.0    1.3  1  DUF4288   Domain of unknown function (DUF4288)


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.2e-11   1.1e-07       3      86 ..      14      98 ..      13     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.2e-11
                EEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCG...GCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEE CS
        YCII  3 yvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaet...keqlgGfyiveaadldeaieiaardPfveaGlv 86
                +v++  d p+   +r ++++ahl +   l ++G + +aG+ l+ ++++++    +   g+++iv+a+dl++a ei+++dPf+++G v
  CDO72648.1 14 FVVHTFDVPN--AQRTKHTDAHLVRIVPLIQQGIVKFAGALLTPTSKTTDSdtlAKTAGSILIVRAKDLEQAWEIVKQDPFYASGEV 98
                6677777788..6899**********************999988888876522245679*************************987 PP

>> DUF4288  Domain of unknown function (DUF4288)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05      0.15      10      43 ..      56      89 ..      48     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
     DUF4288 10 iisegsedeqeqfeErlvLvkAdseeeAyekaek 43
                ++++ ++d  ++   ++++v+A++ e+A+e++++
  CDO72648.1 56 TSKTTDSDTLAKTAGSILIVRAKDLEQAWEIVKQ 89
                45554445555555789***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 829.92
//
Query:       CDO72649.1  [L=94]
Description: hypothetical protein BN946_scf184985.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.5   3.8       0.15   11.9   3.8    1.4  1  ARGLU     Arginine and glutamate-rich 1
       0.64   10.5   2.8         30    5.3   2.8    2.3  1  LRV       Leucine rich repeat variant


Domain annotation for each model (and alignments):
>> ARGLU  Arginine and glutamate-rich 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.8   1.7e-05      0.15       5      46 ..      30      68 ..      27      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
       ARGLU  5 sklieeevarRveeavakrVeeelekrkeeiekeverrveea 46
                +k+ eee+ + +e++++ +V +e++   + +++ev++r+ e 
  CDO72649.1 30 KKVFEEELGKELEKLIKAEVLQEID---DLVKAEVAERLPEY 68
                6999*********************...9*********9875 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   2.8    0.0033        30       3      23 ..      57      79 ..      55      81 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0033
         LRV  3 VRaaVArrP..dlPpeaLerLah 23
                V a VA+r    lP++ L +++h
  CDO72649.1 57 VKAEVAERLpeYLPRDLLDEMLH 79
                67778888322477777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 711.65
//
Query:       CDO72650.1  [L=81]
Description: hypothetical protein BN946_scf184985.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 651.17
//
Query:       CDO72651.1  [L=362]
Description: hypothetical protein BN946_scf184985.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1746  (0.0973841); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 2452.48
//
Query:       CDO72652.1  [L=291]
Description: hypothetical protein BN946_scf184985.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-27   94.0   0.0    1.2e-26   93.6   0.0    1.2  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.0   6.7e-31   1.2e-26       1     141 [.      40     226 ..      40     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 6.7e-31
                      EEEE--TT--HHHHHHHHHHHHHSSES...EEEEEESSTHCSST-.SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH............... CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed...livgvpsdeppkkkk.kplasaeeRlemlela.kevdevisvdpweltr............... 74 
                      +a+G+F p+++ Hlr++e+ak+++ +     +vg + +++++++k ++l sa++R+ m+ la ++++++++vdpwe  +               
       CDO72652.1  40 VACGSFSPVTYLHLRMFEMAKDYVRQNtdfEVVGGYLSPVSDQYKkPGLLSAHHRVNMCNLAaEQTSQWLMVDPWEAFQdyqrtavvldhfdye 133
                      69***********************999**8888888887777754*******************************************88887 PP

                      HHHHHTTTT.........EEEEEEEHHHHHHHHCHH.....HHHHHHHHHHHEEEEEE............HTTCEEEEEEECCTTTCSHHHHH CS
  CTP_transf_like  75 evlkklkpd.........klylvigadvledfsewk.....eleeilgnvklvvvsrp............ekqanvllkaekrtngiSstkir 141
                        +k+ +++          ++l++g d+++++se+      +l++ilg++++++++r               ++n++l+++   n++Sstk+r
       CDO72652.1 134 INTKRGGIElpdgtrkpaRIMLLAGSDLIATMSEPGvwseaDLDHILGRYGVMIIERAgadmdqaidslsRWRHNIHLIHQLVQNDVSSTKVR 226
                      4444444433335555679*************8888999******************************999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2148.98
//
Query:       CDO72653.1  [L=134]
Description: hypothetical protein BN946_scf184985.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-17   63.3   0.0    2.7e-17   63.1   0.0    1.0  1  Amidohydro_1  Amidohydrolase family
    4.9e-11   42.8   0.0    5.6e-11   42.6   0.0    1.1  1  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0     3e-21   2.7e-17     236     344 .]      42     129 ..      30     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 3e-21
                   HHHTSC.EEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTS CS
  Amidohydro_1 236 ldeGvk.vglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkd 331
                   +++G k    gtD   +g++++l +++r+              +g+sl ea+++aT+n+A++lgl++++G++ +G dADlvv+            ++
    CDO72653.1  42 VKDGDKlYLEGTD-TLAGSVVTLDKCVRNFS----------RFTGCSLGEAIKCATFNPARCLGLAHRKGTLRAGADADLVVL-----------DRK 116
                   6666662344899.88888888877788888..........4788**************************************...........*** PP

                   EEEEEEEETTEEE CS
  Amidohydro_1 332 gnvkkvivkGklv 344
                   g+v +++vkGk v
    CDO72653.1 117 GKVLSTWVKGKEV 129
                   **********987 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   6.2e-15   5.6e-11     408     448 ..      76     116 ..      53     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 6.2e-15
  Amidohydro_3 408 lsleealalyTrgpAkalgledrkGtLevGadADlvvldad 448
                    sl ea++  T +pA+ lgl +rkGtL++GadADlvvld++
    CDO72653.1  76 CSLGEAIKCATFNPARCLGLAHRKGTLRAGADADLVVLDRK 116
                   599***********************************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1037.44
//
Query:       CDO72654.1  [L=200]
Description: hypothetical protein BN946_scf184985.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00045   19.6   0.0    0.00053   19.4   0.0    1.0  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     3e-08   0.00053       1     126 [.      60     184 ..      60     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3e-08
                   EEEE-EEEEEEECETTECSSSGHHHHH...STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHH...HHHT.SSSEEEEEEESSEG CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwl...vppetaaealesgiktalksGtttvadmgattst....giealle...aaee.lplglrilggkvsl 86 
                   i+ PG+ID+++ +  ++ +            ++e ++++l+++++  ++ G+t+ + +++t+++     i  ll+   a  + + lg +++g++  +
    CDO72654.1  60 ILSPGFIDIQINGAYNFDF-------SvydGDDEAYRAGLKRVAENIVETGVTSLLPTIITQERslypKILNLLRpytAPNSaTLLGWHAEGPFIQF 149
                   689**********977533.......2344999****************************999**99888888856444449889*****998888 PP

                   GSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGT CS
  Amidohydro_1  87 drgsaetskasreklkagaaetikgkadgvvkvalaphea 126
                   + + + + +   +  k++     k ++d+  k  la++e+
    CDO72654.1 150 A-KRGAHAPQFLVSAKEEL----KSFEDVYGKENLADAED 184
                   8.66666666666665555....44444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1553.03
//
Query:       CDO72655.1  [L=805]
Description: hypothetical protein BN946_scf184985.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5587.82
//
Query:       CDO72656.1  [L=700]
Description: hypothetical protein BN946_scf184985.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-27   94.1   0.1    4.4e-27   94.1   0.1    4.9  6  Kri1_C     KRI1-like family C-terminal
      5e-25   88.0   8.2      5e-25   88.0   8.2    6.4  6  Kri1       KRI1-like family


Domain annotation for each model (and alignments):
>> Kri1_C  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.77   6.9e+03      63      75 ..      20      32 ..       2      41 .. 0.47
   2 ?   -4.2   0.5         2   1.8e+04      68      75 ..      98     105 ..      84     117 .. 0.46
   3 ?   -5.0   5.1         2   1.8e+04      70      84 ..     228     242 ..     222     251 .. 0.43
   4 ?   -5.3   6.2         2   1.8e+04      68      88 ..     361     381 ..     354     389 .. 0.60
   5 ?    0.3   1.6     0.088   7.9e+02      69      82 ..     488     501 ..     478     507 .. 0.51
   6 !   94.1   0.1   4.9e-31   4.4e-27       2      81 ..     539     616 ..     538     623 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.77
      Kri1_C 63 Yrdkekkkkdkkk 75
                Y ++ + +k++++
  CDO72656.1 20 YAKAFEYRKEREE 32
                3333333333333 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2
      Kri1_C  68 kkkkdkkk 75 
                 ++k++ ++
  CDO72656.1  98 EEKQRTRD 105
                 22233333 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 2
      Kri1_C  70 kkdkkklkkkkrlre 84 
                 +++kkk kk k+ +e
  CDO72656.1 228 AQEKKKSKKGKKEKE 242
                 333333333333332 PP

  == domain 4  score: -5.3 bits;  conditional E-value: 2
      Kri1_C  68 kkkkdkkklkkkkrlrewrke 88 
                 k++++kkk +k+++l ++++e
  CDO72656.1 361 KEAREKKKARKEEELLKKKEE 381
                 555555555555555555544 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.088
      Kri1_C  69 kkkdkkklkkkkrl 82 
                 + k+kkk kkkk+ 
  CDO72656.1 488 EFKKKKKKKKKKKA 501
                 33333333333333 PP

  == domain 6  score: 94.1 bits;  conditional E-value: 4.9e-31
      Kri1_C   2 kleelvdeyykldledvigdlkvrFkYrevspesFgLtareILladDkeLnefvglkklapYrdkekkkkdkkklkkkkr 81 
                 klee++de y ld++dv+ ++++rFkY++v+p++FgLt+ eIL+a+D+eLn+++g+kklapYr++ k   + ++ k+ +r
  CDO72656.1 539 KLEEYMDELYGLDFNDVVAGMPTRFKYTKVEPQNFGLTPAEILMATDAELNSYMGIKKLAPYRKEGK--GRTWDSKRAAR 616
                 89**************************************************************984..34444444444 PP

>> Kri1  KRI1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.8     0.019   1.7e+02      20      54 ..      24      56 ..      17      66 .. 0.60
   2 ?   -4.4   4.2         2   1.8e+04      12      30 ..      98     116 ..      90     194 .. 0.47
   3 ?   -7.3   8.7         2   1.8e+04       1      21 [.     230     250 ..     177     255 .. 0.74
   4 ?  -10.3  12.7         2   1.8e+04       2      25 ..     231     254 ..     222     349 .. 0.58
   5 !   88.0   8.2   5.6e-29     5e-25       1     101 [.     369     482 ..     369     484 .. 0.88
   6 ?   -1.4  11.6      0.38   3.4e+03       8      78 ..     488     554 ..     482     571 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.019
        Kri1 20 lkreeieeklekikkaag......eeeaalkeleeeeledl 54
                   ++ +e+l+k+k+++g      +        e++++e+l
  CDO72656.1 24 FEYRKEREELAKLKEEYGsdvdedD--------EDDDSEEL 56
                55566789999*******4443221........22222222 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
        Kri1  12 eelkrlkklkreeieekle 30 
                 ee++r + ++ ++ +ek +
  CDO72656.1  98 EEKQRTRDIQLSKRTEKDK 116
                 4444544444433333322 PP

  == domain 3  score: -7.3 bits;  conditional E-value: 2
        Kri1   1 erkeeekeekkeelkrlkklk 21 
                 e+k+++k +k++e ++ k+  
  CDO72656.1 230 EKKKSKKGKKEKEPAKSKQEE 250
                 455555556666666655554 PP

  == domain 4  score: -10.3 bits;  conditional E-value: 2
        Kri1   2 rkeeekeekkeelkrlkklkreei 25 
                 +k+++k +k++e ++ k+   +e+
  CDO72656.1 231 KKKSKKGKKEKEPAKSKQEEDQEF 254
                 455555555555555555555443 PP

  == domain 5  score: 88.0 bits;  conditional E-value: 5.6e-29
        Kri1   1 erkeeekeekkeelkrlkklkreeieeklekikkaag.....................eeeaalkeleeeeledlldgdfDpekwdrkmkklFgeeyya 78 
                 +rkeee  +kkee+krlk+lk++e++ kle+i++++g                     +   al      e  dl +g++Dp+k+d+ m+k+++++  +
  CDO72656.1 369 ARKEEELLKKKEEVKRLKALKMKELQAKLERIRHEGGkkieetqgvsqrmftvggkhaDVVIAL------EELDL-EGEWDPAKHDQAMAKIYANDVVD 460
                 59***********************************************999865433333333......44477.*********************** PP

        Kri1  79 eedeeekkPkwdddidikdivpd 101
                 e  ++e+kP wdddidi+divp+
  CDO72656.1 461 ET-VDEEKPHWDDDIDIGDIVPP 482
                 86.67888************986 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.38
        Kri1   8 eekkeelkrlkklkreeieeklekikkaageeeaalkeleeeeledlldgdfDpekwdrkmkklFgeeyya 78 
                 e kk+++k++kk   +eiee    i +   e e+     +eee++ +  ++    k ++ m +l+g ++++
  CDO72656.1 488 EFKKKKKKKKKKKAEDEIEEGGVDIDEMDAEVERP--PQDEEEWDGT--EEMRKRKLEEYMDELYGLDFND 554
                 44555555555555556666666666665533333..3335677776..7778899999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2024  (0.11289); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.53
# Mc/sec: 3951.42
//
Query:       CDO72657.1  [L=529]
Description: hypothetical protein BN946_scf184985.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0049   16.7   0.0      0.014   15.3   0.0    1.8  1  F-box     F-box domain
  ------ inclusion threshold ------
      0.071   13.4   0.1        2.9    8.2   0.0    3.4  3  B5        tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-06     0.014       4      43 ..       4      43 ..       1      45 [. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwrilidsdrlw 43
                 +LP+++l+ IL+ +++ ++  l+r+ + ++ +  ++rl 
  CDO72657.1  4 QNLPLDLLLMILRICSPQTIAILMRTYRAVYEAAEGPRLL 43
                69******************************99999986 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.35   3.1e+03      22      48 ..     142     169 ..     136     176 .. 0.74
   2 ?    8.2   0.0   0.00033       2.9      40      62 ..     314     339 ..     194     340 .. 0.78
   3 ?   -0.0   0.0      0.13   1.1e+03      17      40 ..     506     529 .]     498     529 .] 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.35
                 HHHHHHTT-E.EESSTTCEEEE--TT.- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
          B5  22 ikiLkrlgceriekdkdlllVtvPsw.R 48 
                 i++L+rl ++   +++  ll   P++ R
  CDO72657.1 142 IRTLRRLAVDELDENAHALLLSLPPTlR 169
                 7889999998778888888888777757 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00033
                 EEEE--TT-..TT-.-SHHHHHHHHH CS
                 xxxxxxxxx..xxx.xxxxxxxxxxx RF
          B5  40 llVtvPswR..sDl.ereeDliEEva 62 
                 l + vP  R   D+ ++ +Dl+EEv+
  CDO72657.1 314 LVCRVPELRlrGDVtVHSCDLMEEVL 339
                 66789998642699559*******96 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.13
                 -HHHHHHHHHHTT-E.EESSTTCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
          B5  17 seeeiikiLkrlgceriekdkdll 40 
                 ++ee++  L +lg+   ++d++++
  CDO72657.1 506 DREEVVAALGELGFGGAQDDDEGW 529
                 679***********9877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3756.46
//
Query:       CDO72658.1  [L=786]
Description: hypothetical protein BN946_scf184985.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.5    8.1  12.2         18    5.3   0.1    2.5  2  UL42      HCMV UL42


Domain annotation for each model (and alignments):
>> UL42  HCMV UL42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   8.8    0.0043        78      35      66 ..      13      43 ..       4      55 .. 0.80
   2 ?    5.3   0.1   0.00099        18      84     121 ..     132     171 ..     114     179 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0043
        UL42 35 ppppdcspppyrppyclvsspsprhtfdmdmm 66
                pppp  sppp rpp  + +s + r+ + +dm 
  CDO72658.1 13 PPPPPSSPPP-RPPLSFPASTARRYILALDMS 43
                4444456655.9***************99996 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.00099
        UL42  84 wkwtfallvvailgiiflavv....ftvvinrdsanittgtq 121
                 w w+     +ail + ++avv    ftvv       + +gt 
  CDO72658.1 132 WVWA--AAAIAILAVAVVAVVvpvyFTVVKPNRHNSVKSGTV 171
                 5554..444445544444443222288887555556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5091.82
//
Query:       CDO72659.1  [L=250]
Description: hypothetical protein BN946_scf184985.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.038   13.8   0.0       0.07   12.9   0.0    1.5  1  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer


Domain annotation for each model (and alignments):
>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.9e-06      0.07     131     163 ..     158     190 ..     150     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-06
  WES_acyltransf 131 illkvHHAliDGvgglkllarlldldpddpprp 163
                     +++k  H ++DG++g++l++ +ld   ++p + 
      CDO72659.1 158 VIFKAAHTIADGISGTTLARTFLDVLCSPPVPV 190
                     889*********************988877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1877.87
//
Query:       CDO72660.1  [L=314]
Description: hypothetical protein BN946_scf184985.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2192.45
//
Query:       CDO72661.1  [L=525]
Description: hypothetical protein BN946_scf184985.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-23   82.2   0.0    7.6e-23   80.4   0.0    2.0  2  TEA       TEA/ATTS domain


Domain annotation for each model (and alignments):
>> TEA  TEA/ATTS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   4.2e-27   7.6e-23       2      68 .]      53     119 ..      52     119 .. 0.90
   2 ?   -2.1   0.0      0.23   4.1e+03       5      15 ..     305     315 ..     303     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 4.2e-27
         TEA   2 ekvWppeledafleallliPpmgrrklklegklhgRnelIseyIlkktgkertrKQvsShiQvlkkt 68 
                 e vWpp le+a++e+l+++ p + r+    g+++ Rn++Is+yI++ tgk+rt+KQv+S++Q+l++t
  CDO72661.1  53 EVVWPPYLEAALVEGLEKYQPVESRTSRSFGRFPMRNKFISDYIFNVTGKRRTPKQVGSRLQQLRDT 119
                 78*****************555555555559**********************************85 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.23
         TEA   5 Wppeledafle 15 
                 Wp e+e +fl 
  CDO72661.1 305 WPSEMECTFLY 315
                 99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3875.53
//
Query:       CDO72662.1  [L=552]
Description: hypothetical protein BN946_scf184985.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.8e-117  391.3   0.0     4e-115  385.5   0.0    2.0  1  DUF4246   Protein of unknown function (DUF4246)


Domain annotation for each model (and alignments):
>> DUF4246  Protein of unknown function (DUF4246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.5   0.0  2.2e-119    4e-115       2     452 ..      32     487 ..      31     488 .. 0.87

  Alignments for each domain:
  == domain 1  score: 385.5 bits;  conditional E-value: 2.2e-119
     DUF4246   2 tvrEvamlklmeaitdkpdWekkvfdeeivakWkkealaaeeeel.......................lsekmadwcieELrdkakef.eetglvavld 76 
                 t+ E+ m+ l   ++ kp+W++kv d++ivakW++e+++++ + +                       ++++++d++++EL+++a++  ++tg+     
  CDO72662.1  32 TLVELRMHWLLGMVRSKPQWWEKVNDPAIVAKWRREIVDEDAKPVeklwggeerfnygrgekqwprdpITDAQLDYVLDELKYEASRRdSQTGI-Y-AT 128
                 789*********************************999988887999*************************************999345566.3.33 PP

     DUF4246  77 sssavvksDtlvseelkeeLkkavakLedvpeeekdwhpgsdeqvldlVhpslfplvYgrtrvlkdgvvkledalesagkGevlek............k 163
                 +  +v++s +l+ +++k++L + v+ Le++peee dwhpgs++qvldl+hpsl++l  g++ +  +++ +  d l+  ++ e l +             
  CDO72662.1 129 AIPKVYESRSLILRDVKAALISGVSALESTPEEERDWHPGSNQQVLDLLHPSLYCLRIGQSYIHARNS-SSGDPLRVQTEEEYLDNrpdlnfflnyqpF 226
                 479**********************************************************9996666.444555555555544333444445555557 PP

     DUF4246 164 llskkfqwLPcevefsedgksvkitSYINnLhpkkhkelYsviekliekaiplwnevlaklkeeereprrieeeepeeeeeeeeedeeeeeereeewee 262
                  +s+k+qwLP+++++s++g+ vk   YINn+hp +h+el   i ++++++ pl+++vl++   + + p  +                   + ++  w +
  CDO72662.1 227 AVSSKYQWLPTDFAVSAEGE-VKPLGYINNIHPIHHHELDLHIPSILSRFTPLFEHVLSE-VLSPEPPIAV-------------------NVNPYLWYQ 304
                 9***************9998.**************************************8.3344444444...................123456765 PP

     DUF4246 263 errkvvlpepeksfsykeeksvklkeeefkkkgLqVivklanieLtPekpeyeggswhveGqlnEhIvAtalyyydseNitesrLsFrqkvdeeeakee 361
                 + +++   e+    s+ +ek +++     + ++LqVivklani LtPekp+y+ggswhveG+ nE+IvAt+lyyy s+NitesrL+Fr+ v + +  ++
  CDO72662.1 305 HLEEPDSNED---GSC-TEKWIEF---PLRGRTLQVIVKLANIVLTPEKPRYPGGSWHVEGMANEEIVATGLYYYASSNITESRLAFRTVVGHPN-VSD 395
                 5443344443...222.2344444...24679*********************************************************777744.679 PP

     DUF4246 362 leyeqddhealeevfgien.esslqelGsvetkegrllaFpNvlqhrvepfeLaDktkpGhrkilaLfLVDPhiriistanVppQqkdwwae 452
                 +++++ d + + + +g+   +   q lG+  ++e++++aFpNv+qhrv+ feL+D++kpGhrk l++ LVDP+ ri st+ Vpp q+dw+++
  CDO72662.1 396 MKHQHGDVQGFYTAYGFARyDGMNQALGHLIAEEDKCIAFPNVYQHRVDGFELTDPSKPGHRKTLCFSLVDPTARIHSTSDVPPKQEDWMTD 487
                 99*****************6688******************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3856.19
//
Query:       CDO72663.1  [L=395]
Description: hypothetical protein BN946_scf184985.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-51  172.9   0.0    1.1e-50  172.4   0.0    1.3  1  MAGE            MAGE family
  ------ inclusion threshold ------
       0.11   10.8   1.4       0.15   10.4   1.4    1.1  1  Adeno_terminal  Adenoviral DNA terminal protein


Domain annotation for each model (and alignments):
>> MAGE  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.0   1.2e-54   1.1e-50       1     212 [.      68     333 ..      68     334 .. 0.92

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 1.2e-54
        MAGE   1 LVRlalacesqrtpIrRedikkkvlgkqgkrafkkvfeeaqkqLrdvFGmeLvelpskeekkstessqekraaekak....skkstrsksyiLvstlpe 95 
                 LVRlal+ e++r p++R++i+kkvlg+ ++r+f++vf +a+++L+ +FGmeLvel s  ++++++ +  +  + k+     +++st +ksyiL+stl+ 
  CDO72663.1  68 LVRLALFHEQRRIPLKRDEISKKVLGS-STRSFNAVFLAANDILKTTFGMELVELHSSSQDNDIDAMDAE--MLKTAglkkKAASTGTKSYILRSTLDT 163
                 8**************************.57****************************988888777777..455555555899*************** PP

        MAGE  96 eyreaaaiiapskiesealeekeaa............................ykGiltvvlslillsggsiseqeLekyLkrlgldenst...skeit 163
                  ++++a +++ +  e e++e+++++                             +Gil+v+l+l+l++g+si++++L++ Lkrl+l++n +   s ++t
  CDO72663.1 164 VLIDKACAPDAEIRELEQAENPDENeefaeddnpvgtrstgsifawhhadqlaSVGILYVILALVLVEGRSINDNDLRAILKRLQLPSNVSiplSSQST 262
                 ***999888888877777777777799**************************************************************779997779* PP

        MAGE 164 klklkldelLkklvkqgYlvreke.....................s.kasdeeeekveyrvGpRakvEige 212
                 +++l++d++L+ l +qgYl++ +                      +  ++d+  + +e+r+GpRa++E+ge
  CDO72663.1 263 TQNLSIDAYLSLLSRQGYLDKHRLgtagrgapkrarasqrasqavAgAHDDSVLAAYEWRWGPRAHAEVGE 333
                 *****************************************9998556778888999************97 PP

>> Adeno_terminal  Adenoviral DNA terminal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.4   1.7e-05      0.15     311     369 ..       7      67 ..       2     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.7e-05
  Adeno_terminal 311 RrR.reesPlppPeeeeeGiaaeeeeeeeeeeeeledev.issvaelirlLeeeLseearr 369
                     R+R  ++s   pP   + G a +   e+ e+ee+ +++   ++v  ++++L++eL  +ar+
      CDO72663.1   7 RQRhSQPSQSQPPRDTQGGRARRGRAEDHEDEESTNENDeGEAVEIAVEKLQQELERKARD 67 
                     44436677778999999****999886666666555544055566689***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2712.68
//
Query:       CDO72664.1  [L=310]
Description: hypothetical protein BN946_scf184985.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-105  352.4   1.6   1.6e-105  352.1   1.6    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
    3.9e-10   39.6   0.9      6e-10   39.0   0.1    1.7  2  PEP_mutase       Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.1   1.6  1.8e-109  1.6e-105       1     258 [.      24     282 ..      24     283 .. 0.99

  Alignments for each domain:
  == domain 1  score: 352.1 bits;  conditional E-value: 1.8e-109
  Pantoate_transf   1 kvtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeq 94 
                      kvt+++l++m+ +g++iamlTayd++tA++++++gvd+ LVGDsl++v+lgy++t+++tl+em++h++aVarg+++ l+vad+Pfg+y++s e+
       CDO72664.1  24 KVTIQELQQMRVAGKPIAMLTAYDYPTARACEAHGVDITLVGDSLAQVCLGYDDTTRLTLDEMLHHIRAVARGSRTPLLVADMPFGTYHVSAED 117
                      69***********************************************************************99******************* PP

  Pantoate_transf  95 alenAarllkeggadavKleggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaela 188
                      a++nA+r+++egga+avK+egg ev+etvk+l++ gipVm+H+Gl+Pq++  l+g+++qg++++ a+++l++a+aleeaGafa+vlEa+p++l+
       CDO72664.1 118 AIRNAVRIVREGGAEAVKIEGGLEVVETVKRLTQIGIPVMAHVGLMPQRHVMLSGFRAQGRDAAGAMDVLRSALALEEAGAFAMVLEAIPHALG 211
                      ********************************************************************************************** PP

  Pantoate_transf 189 keitekls.iptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelaesieeavkaYaeevkegsFPa 258
                      + it++l+   tIGIGAGa++dGqvlv++D++g+ + ++++fv+++a++++++e++v+ Y+e+v+e+sFPa
       CDO72664.1 212 TYITKRLQrAFTIGIGAGAETDGQVLVWDDMVGTWHGHQARFVRRFADVKSEVEKGVRGYVEAVRERSFPA 282
                      *******8799***********************************************************7 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   6.7e-14     6e-10       2     107 ..      31     139 ..      30     162 .. 0.84
   2 ?   -2.3   0.1      0.27   2.4e+03      90     105 ..     189     204 ..     177     209 .. 0.63

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 6.7e-14
  PEP_mutase   2 raLhakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevvslPl.ivDledG.y.gespeevaetvrrliaa 97 
                 ++++  g+p+ ++ a+D  +a+++e++g++   ++       lG++D+ +l+l+e+l+++ra+a+  + Pl  +D+  G y  ++ + ++++vr + + 
  CDO72664.1  31 QQMRVAGKPIAMLTAYDYPTARACEAHGVDITLVGDSLAQVCLGYDDTTRLTLDEMLHHIRAVARGSRTPLlVADMPFGtYhVSAEDAIRNAVRIVREG 129
                 56777899**********************9999988888999***************************95679987755333456678888888899 PP

  PEP_mutase  98 GvvgvniEDk 107
                 G+ +v iE  
  CDO72664.1 130 GAEAVKIEGG 139
                 999***9976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.27
  PEP_mutase  90 tvrrliaaGvvgvniE 105
                     l++aG+ ++++E
  CDO72664.1 189 SALALEEAGAFAMVLE 204
                 3444556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2185.38
//
Query:       CDO72665.1  [L=889]
Description: hypothetical protein BN946_scf184985.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6254.29
//
Query:       CDO72666.1  [L=123]
Description: hypothetical protein BN946_scf184985.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 807.60
//
Query:       CDO72667.1  [L=630]
Description: hypothetical protein BN946_scf184985.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   12.1   0.1       0.34   10.9   0.1    1.5  1  Lac_bphage_repr  Lactococcus bacteriophage repressor


Domain annotation for each model (and alignments):
>> Lac_bphage_repr  Lactococcus bacteriophage repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.9e-05      0.34      17      44 ..     134     161 ..     123     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
  Lac_bphage_repr  17 kvDWdeWVSFDGkPltDeVKkilkailG 44 
                       +D d  VSF G+ l+D V ++l  i+ 
       CDO72667.1 134 EIDLDIPVSFGGHGLSDPVPHALSRIYW 161
                      5899999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4409.60
//
Query:       CDO72668.1  [L=325]
Description: hypothetical protein BN946_scf184985.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-31  109.8   0.0      2e-31  109.4   0.0    1.2  1  NmrA            NmrA-like family
    4.5e-14   52.8   0.2    1.1e-13   51.5   0.2    1.6  1  NAD_binding_10  NAD(P)H-binding
     0.0032   16.5   0.0     0.0048   15.9   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0071   16.8   0.1      0.013   15.9   0.1    1.4  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
  ------ inclusion threshold ------
      0.025   14.1   0.1       0.11   11.9   0.0    1.9  2  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   5.5e-35     2e-31       1     207 [.       8     208 ..       8     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 5.5e-35
                 EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S..-SHHHHHHHHSTTEEEES-TT-.HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-S CS
        NmrA   1 IlviGaTGrqGksvvrallk.aghkvralvRdt..kselakslkeaGvelvkgdldd.keslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvk 95 
                 +lv+GaTG+ G+s+v+ ll+  ++++ alvR    ++ + +++ +aGve+  gdl d  e l eal+gv+  +s+++     ied+k+  +Aak+aGv+
  CDO72668.1   8 VLVLGATGHTGGSIVKGLLAsGKFRIAALVRPAslSKPATNAFRDAGVEIRTGDLRDgVEKLTEALQGVNILISAVS--AWVIEDQKDAFRAAKAAGVE 104
                 79**************9998688********98889******************976379*****************..889***************** PP

                 EEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHH CS
        NmrA  96 hfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikil 194
                 ++++  +g    r       + ++d+K  i++ v++lg+ ytf+  g +m+  l+l+      +   ++ ++++   g+ + vll++ + iG++v+ i+
  CDO72668.1 105 RLVPCDFGTPGARG-----VRLLHDQKLAIRDFVKELGVGYTFIDVGWWMQLGLPLPER--SANPFMKTLSYEIYDKGD-DKVLLTDLNHIGTYVARIV 195
                 *********99555.....6679********************************8887..666666677899999999.555556************* PP

                 HHHHHHTTEEEEE CS
        NmrA 195 kdprklkgkrikl 207
                  dpr+l+  +i  
  CDO72668.1 196 ADPRTLNHAVIVW 208
                 ******7776654 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.2     3e-17   1.1e-13       1     145 [.      12     147 ..      12     154 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 3e-17
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHH....HCHHHHCTTTCEEEE--TT-.CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpe....klaeleaeeglevvegdvtd.vedlaealkgadaVvsalggggkdeegaknivdaakeagv 90 
                     GAtG++G  +vk lla+g++++ alvR ++     ++++ +++g+e+ +gd+ d ve+l+eal+g+++ +sa+++     e  k + +aak+agv
      CDO72668.1  12 GATGHTGGSIVKGLLASGKFRIAALVRPASlskpATNAF-RDAGVEIRTGDLRDgVEKLTEALQGVNILISAVSAWVI--EDQKDAFRAAKAAGV 103
                     9**************************854221133345.57***********978*****************98776..458999********* PP

                     -EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-C CS
  NAD_binding_10  91 kRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpgg 145
                     +R+v +     g     +      + ++  ++ k a  + +++ g+ +T++  g+
      CDO72668.1 104 ERLVPCDFGTPG-----A------RGVRLLHDQKLAIRDFVKELGVGYTFIDVGW 147
                     ****98775544.....2......3345667788888888888888888888887 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06    0.0048       1      80 [.       9      89 ..       9     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlD....lrespelleelskvnvkkviegDvtd.kdkleealegvdvvihlaslvdva 80
                +v+G++G  G ++vk L+  ++    r++        s++  + ++  +v+ + +gD++d  +kl+eal+gv+++i   s+  + 
  CDO72668.1  9 LVLGATGHTGGSIVKGLLASGK---FRIAAlvrpASLSKPATNAFRDAGVE-IRTGDLRDgVEKLTEALQGVNILISAVSAWVIE 89
                69*******************7...44444111144455555677777777.99*****94589**********99876665444 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   3.7e-06     0.013       2      91 ..       8     100 ..       7     104 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.7e-06
                     EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG....GGTTTECEBEEE...GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHT CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk....aleegkdlkved...vdeeelkevdivflalpagvskelapklaea 89 
                     v ++GatG +G  +++ L  + ++ +++l+  ++   k+ ++a++    +   +++  ++d     +e+l++v+i+++a++a v ++  +++++a
      CDO72668.1   8 VLVLGATGHTGGSIVKGLLASGKFRIAALVRPAS-LSKPATNAFRdagvE---IRTGDLRDgveKLTEALQGVNILISAVSAWVIEDQKDAFRAA 98 
                     789*****************99999999887666.666666666653432...33334444332467888************9999999999887 PP

                     TS CS
  Semialdhyde_dh  90 gv 91 
                     ++
      CDO72668.1  99 KA 100
                     65 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.11       1      65 [.       8      76 ..       8     108 .. 0.76
   2 ?   -0.3   0.0      0.17     6e+02      93     129 ..     273     309 ..     200     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
                EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC....EEEE--TT-HH.HHHHHHHHHT- CS
   Epimerase  1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl....elveldltdrs.alerlfkeeqp 65
                +lV+GatG  G  +vk ll+ g  ++ +l r  s s+ a ++      e+ ++dl+d++ +l+++++  ++
  CDO72668.1  8 VLVLGATGHTGGSIVKGLLASGkFRIAALVRPASLSKPATNAFRdagvEIRTGDLRDGVeKLTEALQ--GV 76
                79********************86688888887766666555446678********99856666666..44 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBST CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkee 129
                 +++++++ +    ++krl +l   e+Y+++++   ee
  CDO72668.1 273 MLSMHVFRENTLENAKRLGYLDARELYPDVPQHTVEE 309
                 4455555555566888999999999999998853333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2396.06
//
Query:       CDO72669.1  [L=752]
Description: hypothetical protein BN946_scf184985.g88, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.5e-207  687.8   0.0   5.4e-206  685.1   0.0    1.8  1  Ceramidase_alk   Neutral/alkaline non-lysosomal ceramidase, N
    4.2e-46  156.9   0.1    7.6e-46  156.0   0.1    1.5  1  Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C


Domain annotation for each model (and alignments):
>> Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  685.1   0.0    6e-210  5.4e-206       1     502 [.      61     587 ..      61     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: 685.1 bits;  conditional E-value: 6e-210
                     EEEEEEEEE----SEEEEEESS--SS-EEEEESS--EEEEEEEEESS.S--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--B CS
  Ceramidase_alk   1 YlvGvgkaDiTGpvaevnlmGYakleqkasGlhqRlysraFivadae.kkkrvvfvsldaamvsqavrlevlkkLkakygdlYteenvalsgtHt 94 
                     Yl+G+g+aDiTGpv+e+n+mGYa+l+q+ +Glh+R++sraFivada  +++r+vf+++d+am+++ vr++++++L++++  lYt+en+als+tH+
      CDO72669.1  61 YLLGLGIADITGPVVETNMMGYASLAQVDTGLHMRQRSRAFIVADAVnSSNRIVFINADIAMGDTGVRRSIVSALSEQFPGLYTNENIALSSTHQ 155
                     9********************************************886888******************************************** PP

                     SBEE----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T..T-TT-TTS---EEEEEEEEE.. CS
  Ceramidase_alk  95 HsgpggylqyllyqitslGfvkqsfdaivdgivksikrAheslkpgklsvgkgelldaninRSpsaYlanPeeerakYksnvdkemtlLkledas 189
                     Hsg ggyl++ll+qit+lG+vkq+ daiv g+v +++rAh+sl+pgklsvg++++ld+n nRSpsaYlanP+eera+Yk++ dk++tlL+++da+
      CDO72669.1 156 HSGVGGYLENLLPQITALGYVKQTADAIVAGTVLAVQRAHASLAPGKLSVGNTTVLDGNRNRSPSAYLANPAEERARYKYDQDKDLTLLRFDDAN 250
                     *********************************************************************************************87 PP

                     .T-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT--S.....TT-EEEEE-SS-TTEES-SS.......................... CS
  Ceramidase_alk 190 dkkeiGvlnwfavHgtslnntntlisgDNkGvAayllekevekkeksgkekfvaafaqsnvGDvspnvlGalCed.....sgeeCdlekstCegk 279
                     ++ + G+++++avHgts++++ntl+s+DNkG+Aayl+e ++       +++fvaafaqsnvGD+spn+lGa+Ce+     +g++Cd+++stC +k
      CDO72669.1 251 GN-ARGFISFYAVHGTSIYENNTLVSSDNKGMAAYLYEPNAMPG----NNTFVAAFAQSNVGDTSPNTLGAFCESpgqpwDGQPCDFDHSTCGNK 340
                     76.***********************************999876....699***********************98888999************* PP

                     SSS..TS.SSTS..................-HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GGTSS-EE-----EE--- CS
  Ceramidase_alk 280 sekcagr.gpgk..................defestkiigerqfekakellksakeevsgkvksrhqyvdmskvevklkngtevktckaalGysf 355
                     +e+c+gr  p+                    +fes++ii+++q++ ak+l++++ ++++g+vk++h+y++ms  +++l+ngt+v+tc++a+G+sf
      CDO72669.1 341 TEDCHGRfVPTWflhiitnqvfcsgpgfriSDFESNRIIAQHQVDGAKTLMSQQLTPITGTVKWVHTYMNMSFRSFNLPNGTTVQTCPPAMGFSF 435
                     *****974233345555555555555558868*************************************************************** PP

                     -SS-SSSS-SS---SSS......-HHHHHHT-SS-S---HHHHHHTTT--EEE--T..T-SS-SS-SEEEEEEEEETTEEEEE-SSEE-HHHHHH CS
  Ceramidase_alk 356 aagttdgpgafdftqgete...knplwklvrklllakpskeqkecqapkpilldtgelkkpyawapeivdvqilriGqlvivavpgEvttmaGrR 447
                     a+gttdgpgafdf qg+++   +np+w++v+ +++  p+++q++cq pkpill+tg ++ py+w+p++vd+q+lriGq+vi+++pgE+ttm+GrR
      CDO72669.1 436 AGGTTDGPGAFDFIQGDNSsmpQNPFWEIVKGAVTPLPDQQQVDCQFPKPILLNTGFAHVPYEWSPNTVDIQMLRIGQFVILVMPGELTTMSGRR 530
                     ***************77443349************************************************************************ PP

                     HHHHHHHHHGGGT....--EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-TTHH CS
  Ceramidase_alk 448 lreavkealksegkk..eeevvlaglaNtYshYvtTeeEYqvQrYEgastlyGphtl 502
                     +rea++++l seg    ++ vv+ag+aNtY+hYv+T+eEY+vQrYEgast++G+ + 
      CDO72669.1 531 MREALRAKLISEGVLgdNAYVVIAGPANTYAHYVATREEYSVQRYEGASTIFGQSSA 587
                     ***********987577************************************9865 PP

>> Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   0.1   8.5e-50   7.6e-46       2     168 .]     592     751 ..     591     751 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 8.5e-50
                      HHHHHHHHHT..-----------.-GG--B-S--------STT--TT-EEE---..S.EETT-EEEEEEEE--GGG---TTS-SEEEEEE...S CS
  Ceramidse_alk_C   2 kklaralaagepeelkkgptPpdlsskqlslitgvvvDtaplgksFGdvltdve.ks.yragdtvsvtFvganPrnnlrlegtFlaVerleeee 93 
                      ++l++ la++ + +  + p+Pp+ +sk++sl+t+vv+D+a + ++FGdvltdv+ +s y+ag+ v +tFvg    nnlrle+tFl+V++l    
       CDO72669.1 592 SSLVSFLADHATGQPTSDPAPPEQTSKAISLQTPVVFDAAGIDHDFGDVLTDVRtSSpYTAGEAVIATFVG----NNLRLEQTFLTVDQL---V 678
                      567888888866777789************************************7446************9....99************9...3 PP

                      -S--EEEEETTSTTEEEEEEEET..TTEEEEEEEEE-..-T--SEEEEEEEEEEEE-TTT--EEEEEEE---EEE CS
  Ceramidse_alk_C  94 gkkWetvrtDadwetrfeWkrtssllgtsevtieWeipeedakaGtYRiryfGdaksslggkitpfeGtSseFtv 168
                      +++W+ vr+D++++t+++W+rts++lgts+v+i+W i e  +++GtYR++yfGd+k  l g+itpf G Ss+F +
       CDO72669.1 679 DGQWKAVRSDSHPSTTYQWTRTSTVLGTSTVNITWLI-EIGTPSGTYRVTYFGDSKP-LIGNITPFVGHSSNFAI 751
                      579**********************************.4369**************8.6789***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5363.36
//
Query:       CDO72670.1  [L=445]
Description: hypothetical protein BN946_scf184985.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00057   19.4   0.0    0.00098   18.6   0.0    1.4  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.5e-08   0.00098      70     228 ..      31     197 ..       9     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.5e-08
                 STTS.B-HHHHHHHHHHHHHHHHHCH............TCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---....S-TTSTTGGG-TTTT CS
  His_Phos_2  70 kwggelthaGrkqaeelGrqfrqrYp............lgLlrlhltykdlkirassegRviaSAaafakGllglegelt....dllskdkdllddsna 152
                  + +  t+ G++qa +lG+++r+ Y               L +l+     +k+   + + v +SA a ++Gl++++  ++    +++ +   l  ++  
  CDO72670.1  31 DYTQ-STPLGEVQAHQLGTYLRNLYLnpsssshirgiqSDLVDLKQVHVRVKVGGEGAS-VFDSATALLQGLFPPNPSNKitlaNETTVMAPLNGYQYI 127
                 5566.9****************************8888778877543355555555444.*************99986668888888889999999999 PP

                 CCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHH.HHHHHHH CS
  His_Phos_2 153 akdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedmdeniakrleqlcpgesnllake.rwdkler 228
                  + +++      ++ ++e  ++cpaf++   ++ +  ++ k+  ++ ++ ++  l++++ g  ++++++ +wd +++
  CDO72670.1 128 PVETVEP----SNDRSLEPWTDCPAFQK-HVQDVQKSDEFKQMSQKAQPFFN-SLKDFVYGR-EISMENiVWDYVNS 197
                 9999998....33333345569******.66666666666666666666665.888886665.34444315555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3121.08
//
Query:       CDO72671.1  [L=319]
Description: hypothetical protein BN946_scf184985.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-15   57.1   0.8    2.2e-15   56.7   0.8    1.2  1  SRP_TPR_like     Putative TPR-like repeat
    3.3e-08   33.8   1.0    9.3e-08   32.4   1.0    1.8  1  SRP72            SRP72 RNA-binding domain
    2.3e-07   30.9   4.9    0.00019   21.6   0.4    2.3  2  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    1.1e-06   28.3   7.5     0.0056   16.7   0.3    3.9  4  TPR_2            Tetratricopeptide repeat
     0.0011   19.4  18.2      0.064   13.8   0.3    3.8  4  TPR_19           Tetratricopeptide repeat
     0.0012   18.6   2.8       0.45   10.4   0.4    3.1  3  TPR_1            Tetratricopeptide repeat
     0.0016   18.5   5.3       0.02   15.1   0.1    2.9  3  TPR_9            Tetratricopeptide repeat
     0.0022   18.1   4.4        3.9    7.9   0.1    4.0  4  TPR_8            Tetratricopeptide repeat
     0.0044   17.6   3.7      0.092   13.4   0.2    3.5  3  TPR_6            Tetratricopeptide repeat
     0.0064   15.7   5.8       0.14   11.4   3.1    2.2  2  TPR_15           Tetratricopeptide repeat
     0.0072   17.1  13.2       0.37   11.7   0.5    4.1  3  TPR_14           Tetratricopeptide repeat
     0.0075   16.7   1.9       0.48   10.9   0.5    2.3  2  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
  ------ inclusion threshold ------
      0.012   15.7   0.1          2    8.5   0.0    2.4  2  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
      0.014   15.0   0.0      0.021   14.4   0.0    1.2  1  Lant_dehydr_C    Lantibiotic biosynthesis dehydratase C-term
       0.02   15.2   6.1       0.02   15.2   6.1    2.4  2  TPR_12           Tetratricopeptide repeat
      0.023   14.7   4.6       0.18   11.9   0.4    3.2  3  TPR_7            Tetratricopeptide repeat
      0.044   14.4   5.6      0.044   14.4   5.6    3.8  3  TPR_16           Tetratricopeptide repeat
       0.05   13.4   0.7      0.077   12.7   0.7    1.3  1  DUF2989          Protein of unknown function (DUF2989)
       0.15   11.8   0.2       0.21   11.3   0.2    1.2  1  DUF2225          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.8   2.4e-18   2.2e-15       4     114 ..      59     184 ..      56     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 2.4e-18
  SRP_TPR_like   4 eyekilrlegkelkkf..kvvaliklekyeeaLkllkkgsalsedvrfEkaYvlYklkkykkalkilkkveaee.....kvkvlksqvlYrlgsyek 93 
                   + +kilrle    +    k   l++ ++y+ aL+++  ++a  +   fEkaY lY+l++  +a ++l+k++aee     +v +l++q++Yr g+y+ 
    CDO72671.1  59 TCDKILRLEPRDADALqtKLFLLLQTDQYAAALTMIGGEDANGDVHAFEKAYSLYRLHREDEAESVLEKLKAEEqaddrGVLHLEAQLAYRQGKYQA 155
                   5689****988877554599****************99996666667**********************99987222234669************** PP

  SRP_TPR_like  94 A...YklL.....skekkedelvvNllAv 114
                   A   Y++L        +++ ++  Nl A 
    CDO72671.1 156 AvdlYNQLldtaePDSEEQSDILTNLEAA 184
                   ******99998554455566788898875 PP

>> SRP72  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.0   9.8e-11   9.3e-08       9      56 ..     231     280 ..     224     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 9.8e-11
       SRP72   9 eetatsekgkkkkrkkkrkRkvklPKnydpgvt..pDPERWLPrreRSsY 56 
                  + ++++  ++  ++ k+ R  ++PK   pgvt  pDPERWL ++eRS++
  CDO72671.1 231 ASAPARDPAENAAKRPKKVRMKRVPKGVIPGVTppPDPERWLKKSERSTF 280
                 556677777777677788888888******997446************98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.4     2e-07   0.00019       4      81 ..      52     127 ..      49     128 .. 0.92
   2 !   11.9   0.6   0.00021       0.2      21      51 ..     133     166 ..     126     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2e-07
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ++ nAi  ++++l  e+++++++  +   l+++ qy  A++ +     + +    ++ +A +l+ L++ +eA+++Lek
  CDO72671.1  52 HFANAIKTCDKILRLEPRDADALQTKLFLLLQTDQYAAALTMIGGE--DANGDVHAFEKAYSLYRLHREDEAESVLEK 127
                 789**********9999999999999999999999***********..77777779********************98 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00021
                 --HHH..HHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3  21 esped..ayllAlclylngqykrAyellrka.kl 51 
                 + ++   ++l A+  y++g+y+ A +l++++ ++
  CDO72671.1 133 QADDRgvLHLEAQLAYRQGKYQAAVDLYNQLlDT 166
                 33344447888*****************998555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0076       7.1      14      34 .]      50      70 ..      45      70 .. 0.88
   2 ?   -2.3   0.0       7.3   6.8e+03      10      21 ..      80      91 ..      79      92 .. 0.81
   3 ?    6.3   0.7     0.013        12       5      27 ..     106     128 ..     105     133 .. 0.90
   4 !   16.7   0.3     6e-06    0.0056       3      29 ..     139     165 ..     138     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0076
       TPR_2 14 lgdyeeAleafekAleldPnn 34
                 g+++ A++ ++k l+l+P++
  CDO72671.1 50 GGHFANAIKTCDKILRLEPRD 70
                599****************86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.3
       TPR_2 10 ayyklgdyeeAl 21
                ++++ ++y+ Al
  CDO72671.1 80 LLLQTDQYAAAL 91
                578999999997 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.013
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                 ++ ++++y+l + +eA+  +ek 
  CDO72671.1 106 FEKAYSLYRLHREDEAESVLEKL 128
                 6789**************99996 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 6e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 +l+  ++++y++g+y+ A++++++ l 
  CDO72671.1 139 VLHLEAQLAYRQGKYQAAVDLYNQLLD 165
                 57899*******************996 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   6.8e-05     0.064       5      47 ..      51      93 ..      47      96 .. 0.93
   2 !    8.3   0.7    0.0036       3.4      32      67 ..     109     145 ..      96     146 .. 0.80
   3 !    9.0   0.5    0.0021         2       2      24 ..     148     171 ..     147     189 .. 0.75
   4 ?   -2.2   0.3       6.5   6.2e+03       4      17 ..     217     230 ..     210     243 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.8e-05
      TPR_19  5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAeal 47
                g +a+A++   ++l  +p +a+a+     +ll++ q+++A  +
  CDO72671.1 51 GHFANAIKTCDKILRLEPRDADALQTKLFLLLQTDQYAAALTM 93
                899*************************************876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0036
      TPR_19  32 AeallalgqldeAealLdalpeedpdd.aryasLlAk 67 
                 A  l+ l + deAe +L++l +e++ d   +  L A+
  CDO72671.1 109 AYSLYRLHREDEAESVLEKLKAEEQADdRGVLHLEAQ 145
                 6678999******************984555566666 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0021
      TPR_19   2 laegdyaeAlalleqalqe.dpkn 24 
                 + +g+y++A++l+ q+l+  +p++
  CDO72671.1 148 YRQGKYQAAVDLYNQLLDTaEPDS 171
                 789************985536663 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 6.5
      TPR_19   4 egdyaeAlalleqa 17 
                 ++++a+Ala  +++
  CDO72671.1 217 QQQPASALASVAAV 230
                 45555555544443 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0     0.007       6.6      15      34 .]      51      70 ..      46      70 .. 0.90
   2 ?   -1.3   0.1       2.4   2.3e+03       7      21 ..     108     122 ..     105     127 .. 0.71
   3 !   10.4   0.4   0.00048      0.45       8      26 ..     144     162 ..     139     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.007
                T-HHHHHHHHHHHHHHSTTH CS
       TPR_1 15 gkydeAleyyekALelnPnn 34
                g +  A++ ++k L+l+P +
  CDO72671.1 51 GHFANAIKTCDKILRLEPRD 70
                67999*************75 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
                 HHHHHHHTT-HHHHH CS
       TPR_1   7 lGnayfklgkydeAl 21 
                 +++ +++l + deA+
  CDO72671.1 108 KAYSLYRLHREDEAE 122
                 677788888888886 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00048
                 HHHHHHTT-HHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyek 26 
                 +++ +++gky+ A++ y++
  CDO72671.1 144 AQLAYRQGKYQAAVDLYNQ 162
                 7889*************98 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.1e-05      0.02      10      49 ..      52      91 ..      46      93 .. 0.94
   2 ?    4.9   0.2     0.031        29      36      60 ..     144     168 ..     135     182 .. 0.80
   3 ?   -2.0   0.2       4.3   4.1e+03       9      31 ..     218     240 ..     217     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
       TPR_9 10 dweralavverllllaPddpeerrdRGlllaqlGclsaAl 49
                +++ a+++++ +l l P+d++ +    +ll q ++++aAl
  CDO72671.1 52 HFANAIKTCDKILRLEPRDADALQTKLFLLLQTDQYAAAL 91
                899************************************8 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.031
       TPR_9  36 GlllaqlGclsaAladLeaylalap 60 
                 ++l +++G ++aA++  ++ l+ a+
  CDO72671.1 144 AQLAYRQGKYQAAVDLYNQLLDTAE 168
                 7899**********99999886665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.3
       TPR_9   9 edweralavverllllaPddpee 31 
                 ++ + ala v  +   + +dp e
  CDO72671.1 218 QQPASALASVAAVASAPARDPAE 240
                 67788899888888888888877 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0084       7.9       8      33 ..      44      69 ..      37      70 .. 0.84
   2 ?   -1.3   0.1       3.7   3.5e+03       1      20 [.      71      90 ..      71      93 .. 0.82
   3 ?    1.9   0.3      0.37   3.4e+02       6      26 ..     107     127 ..     105     131 .. 0.84
   4 !    7.9   0.1    0.0041       3.9       4      29 ..     140     165 ..     138     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0084
                HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldpd 33
                 ++ ++ g + +A++++ k l+l+p 
  CDO72671.1 44 LCAQIDGGHFANAIKTCDKILRLEPR 69
                6778889****************996 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.7
                CCHHHHHHHHHHHTT-HHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeA 20
                a+a++ +  ++l++ +y +A
  CDO72671.1 71 ADALQTKLFLLLQTDQYAAA 90
                567888888999999*9999 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.37
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyek 26 
                  +++ +  l + +eA++++ek
  CDO72671.1 107 EKAYSLYRLHREDEAESVLEK 127
                 578888889999999999999 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                 +++ +++   +g+y++A+  y++ l+
  CDO72671.1 140 LHLEAQLAYRQGKYQAAVDLYNQLLD 165
                 6778999****************987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.3   1.3e+03      10      31 ..      47      68 ..      43      70 .. 0.84
   2 ?    2.0   0.2      0.44   4.2e+02       5      28 ..     107     130 ..     105     132 .. 0.81
   3 !   13.4   0.2   9.7e-05     0.092       6      33 .]     143     171 ..     139     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6 10 yrklgdtdkAlealerlikeYP 31
                ++ +g  ++A+++ +++++  P
  CDO72671.1 47 QIDGGHFANAIKTCDKILRLEP 68
                5677899********9999877 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.44
                 HHHHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrk.lgdtdkAlealerlik 28 
                   a+s+++   + d+A   le+l  
  CDO72671.1 107 EKAYSLYRlH-REDEAESVLEKLKA 130
                 5688999956.999*******9975 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHH.-TT- CS
       TPR_6   6 lalsyrklgdtdkAlealerlike.YPdS 33 
                  a++ +++g++++A++++++l++   PdS
  CDO72671.1 143 EAQLAYRQGKYQAAVDLYNQLLDTaEPDS 171
                 588888999*************9866666 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        12     160     198 ..      51      89 ..      40     100 .. 0.87
   2 !   11.4   3.1   0.00015      0.14     117     187 ..     109     178 ..      99     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
      TPR_15 160 gqtdaAlrdyreAlalapdsselraallWlliDlgrrae 198
                 g+ ++A++   + l+l+p ++++ ++ l+ll+ ++++a 
  CDO72671.1  51 GHFANAIKTCDKILRLEPRDADALQTKLFLLLQTDQYAA 89 
                 6778899999**********************9999885 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
      TPR_15 117 lellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraall 187
                  ++l+r++  d+ +++l++l++ee+a ++  +l + a+l+ ++g+ +aA+ +y + l+ a  +se ++ +l
  CDO72671.1 109 AYSLYRLHREDEAESVLEKLKAEEQA-DDRGVLHLEAQLAYRQGKYQAAVDLYNQLLDTAEPDSEEQSDIL 178
                 57888999999999999998877776.67899999999999999999999999999998877777666655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0019       1.8      13      39 ..      49      75 ..      37      84 .. 0.86
   2 ?    4.1   0.6      0.11     1e+02       8      40 ..     109     142 ..     105     146 .. 0.69
   3 !   11.7   0.5   0.00039      0.37       8      35 ..     144     172 ..     137     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0019
      TPR_14 13 alGdpdeAiallrralalaPddaeawl 39
                  G ++ Ai+ ++++l+l P da+a+ 
  CDO72671.1 49 DGGHFANAIKTCDKILRLEPRDADALQ 75
                5799******************98873 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.11
      TPR_14   8 aeallalGdpdeAiallrralal.aPddaeawll 40 
                 a  l++l + deA+ +l+++ a  + dd+ ++ l
  CDO72671.1 109 AYSLYRLHREDEAESVLEKLKAEeQADDRGVLHL 142
                 67899**************844314455544444 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00039
      TPR_14   8 aeallalGdpdeAiallrralala.Pdda 35 
                 a++ +++G++++A++l++++l++a Pd++
  CDO72671.1 144 AQLAYRQGKYQAAVDLYNQLLDTAePDSE 172
                 89999*****************7538876 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.035        33      71     120 ..      39      88 ..      20      94 .. 0.84
   2 !   10.9   0.5    0.0005      0.48      49     109 ..     111     178 ..     107     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.035
                      HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH- CS
  Alkyl_sulf_dimr  71 kvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqa 120
                      ++ + + ++++ g +  a++ +++++  +p++a+a + k   l q  + a
       CDO72671.1  39 RLFTSLCAQIDGGHFANAIKTCDKILRLEPRDADALQTKLFLLLQTDQYA 88 
                      566677789999*************************9999998876655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0005
                      GTS---HHHHHHHHHHHTT......SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH.STT-HHHHHHH CS
  Alkyl_sulf_dimr  49 nLnplppeekakrlvelmG......gaekvlekakealkegdyrwaaellnhlvfa.dpenaeakelk 109
                      +L +l++e++a+ ++e +       ++  +  +a+ a+++g+y++a+ l n+l+   +p+ +e+ +++
       CDO72671.1 111 SLYRLHREDEAESVLEKLKaeeqadDRGVLHLEAQLAYRQGKYQAAVDLYNQLLDTaEPDSEEQSDIL 178
                      677777788887777776656666466667778999******************85488877776654 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0021         2      15      38 ..      51      74 ..      46      78 .. 0.88
   2 ?    4.5   0.0     0.038        36      12      30 ..     148     166 ..     139     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
                T-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C 15 geYseArryvdalLeiEPenrQaq 38
                g + +A + +d +L++EP+   a+
  CDO72671.1 51 GHFANAIKTCDKILRLEPRDADAL 74
                56899*************998886 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.038
                 HHHT-HHHHHHHHHHHHHH CS
  Fis1_TPR_C  12 yklgeYseArryvdalLei 30 
                 y++g+Y+ A  + ++lL  
  CDO72671.1 148 YRQGKYQAAVDLYNQLLDT 166
                 9***************975 PP

>> Lant_dehydr_C  Lantibiotic biosynthesis dehydratase C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.2e-05     0.021     139     264 ..     134     244 ..     132     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-05
                    HHHHHHHHHH..HHHHTT--HHHHHHHHHHHHSSSS-HHHHH..HHHHHHHHHHHHTSTTHHH.HHHHHHHHHHHTHHHHHHHHHHHHHHHH-SSS CS
  Lant_dehydr_C 139 adSravlallsservrsreqrlglalqlvdvllstfgldleekvdlleryaeaflaefsdtkkalrealdrkyraqrealearlravlaaaaepes 234
                    ad r vl+l   ++ ++r+ + ++a++l  +ll+t+++d ee+ d+l+++++        ++k   + +++ + +  +al + l++ l++a  p++
     CDO72671.1 134 ADDRGVLHLE--AQLAYRQGKYQAAVDLYNQLLDTAEPDSEEQSDILTNLEA--------AQK-HLDFINSGFLHALDALPSVLSNSLQTAPPPQQ 218
                    6777888888..999*************************************........222.45679999999999999999999999998766 PP

                    -SS.....HHHHHHHHHHHHHHHHHHHHHH CS
  Lant_dehydr_C 235 egesadlppflaewaerlrelrrrlealea 264
                    +++    ++++   a + +++r+ +e++++
     CDO72671.1 219 QPA----SALASVAAVASAPARDPAENAAK 244
                    666....55555777777777777777644 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.8   3.6e+03      54      65 ..      80      91 ..      53      94 .. 0.67
   2 ?   15.2   6.1   2.1e-05      0.02      10      76 ..     109     168 ..     104     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.8
      TPR_12 54 lyralgryeeAl 65
                l++++++y++Al
  CDO72671.1 80 LLLQTDQYAAAL 91
                455566666665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.1e-05
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a  l+rl r deA++ lek  +       ++ ++   +l+  ++l +++g+y++A++l+++ l+ ae
  CDO72671.1 109 AYSLYRLHREDEAESVLEKLKA-------EEQADDRGVLHLEAQLAYRQGKYQAAVDLYNQLLDTAE 168
                 7789999999999999999922.......333344458***********************999775 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15   1.4e+02      12      34 ..      50      72 ..      44      74 .. 0.80
   2 ?   -1.3   0.3       3.2     3e+03      16      16 ..     119     119 ..     106     136 .. 0.56
   3 ?   11.9   0.4   0.00019      0.18       6      33 ..     144     171 ..     139     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
       TPR_7 12 lGdyeeAielyeqsLaltkdped 34
                 G++++Ai+ + + L+l+ ++ d
  CDO72671.1 50 GGHFANAIKTCDKILRLEPRDAD 72
                699**********8888876655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.2
       TPR_7  16 e 16 
                 +
  CDO72671.1 119 D 119
                 3 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00019
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpe 33 
                 a+l  r+G+y+ A++ly q+L +++ ++
  CDO72671.1 144 AQLAYRQGKYQAAVDLYNQLLDTAEPDS 171
                 5666689************887665544 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.078        73       7      53 ..      47      90 ..      44      92 .. 0.81
   2 ?   14.4   5.6   4.7e-05     0.044       2      66 ..     107     169 ..     106     172 .. 0.81
   3 ?   -2.5   4.1       8.9   8.4e+03      10      36 ..     217     243 ..     217     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.078
      TPR_16  7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53
                 ++ g+++ A++  +  l++    P++a+Al  +  ++l+   +a+A
  CDO72671.1 47 QIDGGHFANAIKTCDKILRLE---PRDADALQTKLFLLLQTDQYAAA 90
                57889****************...99999986666666666666666 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.7e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++a++++r+ + d+A+ +le + +      d++  l l +++a+rqg +++A++ly+ +l+ a  
  CDO72671.1 107 EKAYSLYRLHREDEAESVLEKLKAEE--QADDRGVLHLEAQLAYRQGKYQAAVDLYNQLLDTAEP 169
                 57889999999999999997776666..5778899999999999999999999999999976654 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.9
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeA 36 
                 +++++ A+a   a+  + +++P+  +A
  CDO72671.1 217 QQQPASALASVAAVASAPARDPAENAA 243
                 678999999999999999999987777 PP

>> DUF2989  Protein of unknown function (DUF2989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   8.2e-05     0.077     112     198 ..     111     196 ..     100     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-05
     DUF2989 112 lyyhWsrfgdqeAlkkflalekqgeleeae.lqlalAtyylkrdaekakklllkaLelskkddkvdpeillsLasiyqkqknlekaYl 198
                 ++y+  r  ++eA + + +l+++++ ++   l l+    y + + + a +l++++L++ ++d + +++il++L   ++++  +++ +l
  CDO72671.1 111 SLYRLHR--EDEAESVLEKLKAEEQADDRGvLHLEAQLAYRQGKYQAAVDLYNQLLDTAEPDSEEQSDILTNLEAAQKHLDFINSGFL 196
                 4555555..67777778888888888776514455556799999*****************************998887766666655 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00022      0.21     139     199 ..     104     171 ..      90     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
     DUF2225 139 lflkkAlelykeayekesfpvegideat.......vlYLiaeLerrlgnkeealrwlskvigskkask 199
                    +kA+ ly+   e e ++v +  +a+       vl L a+L++r g+++ a+  +++++++ +  +
  CDO72671.1 104 HAFEKAYSLYRLHREDEAESVLEKLKAEeqaddrgVLHLEAQLAYRQGKYQAAVDLYNQLLDTAEPDS 171
                 45677888888777777666544433336788888************************998765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2265.68
//
Query:       CDO72672.1  [L=188]
Description: hypothetical protein BN946_scf184985.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00039   20.1   0.0    0.00047   19.8   0.0    1.1  1  RTA1      RTA1 like protein
     0.0044   17.3   0.1     0.0065   16.7   0.1    1.2  1  DUF4381   Domain of unknown function (DUF4381)
  ------ inclusion threshold ------
      0.037   13.5   0.0       0.05   13.1   0.0    1.2  1  Rax2      Cortical protein marker for cell polarity
       0.16   11.3   0.1       0.24   10.8   0.1    1.2  1  DUF5305   Family of unknown function (DUF5305)
       0.18   12.7   0.0        0.5   11.3   0.0    1.7  1  EphA2_TM  Ephrin type-A receptor 2 transmembrane domain


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.3e-07   0.00047      87     144 ..       4      62 ..       1      82 [. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.3e-07
        RTA1  87 aaGGglaasasssae.aklGeniiiaGlalQvvvlvvFlllaldFllrvrkskkfkkfl 144
                 a+G+++++++s+ +  +++ ++++  G++l vv+ +vF+ la+ F++r +k+k+ k  l
  CDO72672.1   4 ATGSATSSASSTISPaQSKSATVLALGISLAVVATLVFGGLAVYFVRRRYKRKQAKERL 62 
                 667777777777665899******************************99766666544 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.8e-06    0.0065      13      64 ..      23      69 ..      15      86 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
     DUF4381 13 swwPpapGwwlllaalllllllvlalwllrrrkrnrreAlreLaalradead 64
                s   +a G  l ++a   l++ +la++ +rrr + r++A + La+l+  +++
  CDO72672.1 23 SATVLALGISLAVVA-T-LVFGGLAVYFVRRRYK-RKQAKERLAELS--AHR 69
                677788895555533.3.4444444444444433.566666666666..222 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05      0.05     168     212 ..      27      75 ..       7      78 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
        Rax2 168 IgLAlALgtvallgllgiilayirkkregyepakp.....ridenemldr 212
                  +L+++L++va l+  g+ ++++r++ +   +ak+       ++ + +  
  CDO72672.1  27 LALGISLAVVATLVFGGLAVYFVRRRYKRK-QAKErlaelSAHRRTAMVS 75 
                 589999999999999999999988776553.3333022245555555555 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.8e-05      0.24     107     156 ..      20      70 ..       2      71 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
     DUF5305 107 vkespslae.......gilliilgllaliglvvlirriiftsskaekyelelekilk 156
                  +      +       gi l+++++l  +gl+v ++r + ++++a+++ +el+ +++
  CDO72672.1  20 QS------KsatvlalGISLAVVATLVFGGLAVYFVRRRYKRKQAKERLAELSAHRR 70 
                 23......2333355899999999999999999999999999999999999999987 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014       0.5       4      59 ..      30     164 ..      27     166 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
    EphA2_TM   4 aavaglvllvilvilvlvlvrrrsknrkqksdl..................................k............................... 37 
                 ++ +++v  +++  l++++vrrr k++++k+ +                                  +                               
  CDO72672.1  30 GISLAVVATLVFGGLAVYFVRRRYKRKQAKE-RlaelsahrrtamvsvdpshlaarvtpfgvdapelEvpkfvhqpgqnmrvayrrsdggwefhhaapv 127
                 5566777777778888888855555555554.4477777776666666665555555555444444404444444444555555555555556666666 PP

    EphA2_TM  38 ..............skeekkeeensgkk.glktYvDP 59 
                               s++++ke++   ++ +++ Yv+P
  CDO72672.1 128 pnqsldltrdfttySRANTKEKKLRPGElTTRGYVEP 164
                 6666666666654422222222222223567777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1567.68
//
Query:       CDO72673.1  [L=3314]
Description: hypothetical protein BN946_scf184985.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.5e-178  593.8   6.6   3.5e-178  593.8   6.6    4.8  5  DRIM            Down-regulated in metastasis
    1.7e-26   93.1   0.0      1e-24   87.3   0.0    3.4  2  Dynamin_M       Dynamin central region
    1.7e-11   44.4   0.0    1.7e-10   41.2   0.0    2.4  2  Dynamin_N       Dynamin family
     0.0011   19.4   5.0        0.3   11.6   0.0    6.5  6  HEAT_EZ         HEAT-like repeat
     0.0025   17.8   0.1       0.01   15.8   0.0    2.0  2  KIND            Kinase non-catalytic C-lobe domain
     0.0087   15.7   4.8        4.1    6.9   0.0    5.1  4  CLASP_N         CLASP N terminal
     0.0093   16.1   3.3         99    3.6   0.0    6.5  5  HEAT            HEAT repeat
  ------ inclusion threshold ------
      0.014   15.0   5.0      0.084   12.4   0.4    3.8  3  MMS19_N         Dos2-interacting transcription regulator of R
       0.02   15.1   0.1       0.13   12.4   0.0    2.6  2  GED             Dynamin GTPase effector domain
       0.03   15.0   0.6        9.7    7.0   0.0    4.8  3  Bcl-2           Apoptosis regulator proteins, Bcl-2 family
      0.031   14.5   6.4         30    4.7   0.0    6.4  6  Condensin2nSMC  Condensin II non structural maintenance of ch
       0.23   12.1   2.7         15    6.3   0.7    4.4  3  DUF4404         Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.19   2.9e+02     203     238 ..     115     159 ..      94     347 .. 0.50
   2 !  593.8   6.6  2.3e-181  3.5e-178       6     622 ..     826    1427 ..     823    1428 .. 0.94
   3 ?    1.8   0.2      0.04        59     385     458 ..    1649    1721 ..    1543    1885 .. 0.72
   4 ?    2.4   0.6     0.026        39     382     517 ..    2022    2169 ..    1995    2228 .. 0.80
   5 ?   -2.7   0.2      0.92   1.4e+03     131     505 ..    2476    2526 ..    2456    2591 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.19
        DRIM 203 kelgsklapflpkllklllyclaaaqrrlksssee..............e 238
                 + l + lap  p++lk ll +l ++    ++   +               
  CDO72673.1 115 HDLRTTLAPEYPRILKRLLQLLPRSI--SAE---AltallatfsalfkyV 159
                 33333333333333333333332222..111...0111222233333330 PP

  == domain 2  score: 593.8 bits;  conditional E-value: 2.3e-181
        DRIM    6 dlkalLklfakfknpkalykseelyeallelLsngdeeiQklALkclltyknpaltpYkenLenLlddkkfrdeLtkfklsseesieeehraelmpv 102 
                  +l  +Lklf+kf+np al  ++ +++++ +lL+++d+ +Q+lA+ clltyk+pal+  +++L+ Lld++++rdeLt++ l    +ie+++r+el++v
  CDO72673.1  826 KLAGWLKLFSKFSNPNALRSTDTMRALYVSLLAHPDRSLQRLAFSCLLTYKSPALVSREDSLRMLLDETRWRDELTQLDLV---QIEQDERHELVDV 919 
                  6788**************************************************************************999...9************ PP

        DRIM  103 llRiLyGrmiskkgssasgkagqqarRaavLrfLaglseeelssFldlalgplkkvleaaetqgsdelkelvnkldevdleevlplrrqlgflnlle 199 
                  ++R+LyG m+++kg +++g+     rRaa+L++Lag+++eel  ++dl+l+p+ k + ++e +   +            ++e ++ ++q+gfl+ll 
  CDO72673.1  920 IIRLLYGMMLERKG-RTRGA----DRRAAILSSLAGCTDEELPLLVDLMLQPVRKDRPTQEGD--FAIC---------PVHEDVSEKQQVGFLTLLG 1000
                  **************.87777....4****************************9775444432..2222.........58999************** PP

        DRIM  200 dvlkelgsklapflpkllklllyclaaaqrrlksssee...............eeeeeeevla........sllkniRqlglkcLvdlfsnfgesed 273 
                  dvlk+lgs++ + +p ll++ll ++a+aq+ l+ ++++               +        +        ++l++iR+lglk+L+d+f+    + d
  CDO72673.1 1001 DVLKHLGSRMVSKWPVLLETLLDLIANAQASLDGQKDDrvdegaeedaeaedeD--------QgaessassRTLRSIRKLGLKRLADFFRAPIIY-D 1088
                  ********************************9999999999887666544322........1444566779*******************9988.9 PP

        DRIM  274 wspyldaifeevvsPrlekLpsenlqspsaLlkLfltWsssprlaplLakydssvlpavielLsapkakesVvefvldivenllkladeeeeeeede 370 
                  +s+yl+ +f++++sPrl++L  en+qspsaLl Lf  W++++++a +L++yd++vlp+++++L a+++k++V++ v+dive+l  l+ ++       
  CDO72673.1 1089 FSSYLPEMFRACISPRLPTLDLENTQSPSALLDLFYSWTQRQEYAVYLVRYDDRVLPKIYDCLVATNVKPAVISKVFDIVEHLQALSIAD------- 1178
                  *************************************************************************************98774....... PP

        DRIM  371 eeigselLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrlyde 467 
                  e+i +++ +phvs lL++l++l+ +s+ +++  ++ l +r+++iLs+lap+++d  qa+ Lldl+ plLrkp+++v+ek+kv++ +il nl++l++e
  CDO72673.1 1179 ETILETVFKPHVSRLLANLTTLVSRSKGVTSAVTDVLGRRQISILSELAPYLSDGIQAKMLLDLFSPLLRKPHKAVPEKVKVDMTSILRNLFPLIQE 1275
                  67************************8888888899************************************************************9 PP

        DRIM  468 ...dev.dlpekllktlsslfsrlkdreaRklLcevlkalakkdpeleevadllsdLNayskrrldepDfdrRlsAFkkineekyksltleqwlpll 560 
                       + + + k++  ls+lf++l++r+aR +L++++  la+ +p ++ +a+l++ LNays++rl+e DfdrRl+AF+++ne++yk+++ + wlp++
  CDO72673.1 1276 lsdA-EsEPFVKTYALLSQLFQTLRSRQARIALVKAFRCLAEVQPLITALAELMDSLNAYSTKRLEEADFDRRLEAFTQLNEKLYKTFSCRDWLPII 1371
                  *743.348899**********************************99************************************************** PP

        DRIM  561 hnclffirdeeelsirsnAsellkrfieaaaskseeepskleleellkdillpalkrglrsk 622 
                  +n+l fi+d+ el+irsnA+++lkrfi+ +a+++ e+      ee++ ++l+p+lk+glrsk
  CDO72673.1 1372 YNMLSFIQDPVELTIRSNAATALKRFIDFVADQRGEY------EETFLKVLYPGLKNGLRSK 1427
                  *******************************988666......467**************98 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.04
        DRIM  385 lLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllplLrkpsrrvsektkvelLkil 458 
                  lL +l ++lek ++ + + + +++   ++i  +l pl + + q s+Ll++l ++Lr +s+++++ ++  l +i 
  CDO72673.1 1649 LLPSLISYLEKRDETEDSLRIPVATGVVQIAKHL-PLEQRDAQISKLLTVLSQVLRSKSQETRDLARETLCRIA 1721
                  2233333332221111111222222222222222.222333344444444444444444444444444443333 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.026
        DRIM  382 vsslLeylsalleksaaskkdkskellereleiLsrl.aplvedseqassLldlllplLrk.....................psrrvsektkvelLk 456 
                  v++  + l+++l++       +s+++ e++l  L++l ap +e+ e +++++++l  ++ +                     +s +v+e  ++ lL+
  CDO72673.1 2022 VQTAFKFLATILREH------PSAQVKEKDLVYLLELlAPDLEEPERQAAVFTMLRAIIARrfvvpeiydimgkvaeimvtsQSPQVQELCRGALLQ 2112
                  455555666666555......8899999999999988899999999999999999999988899999999999888888888777888888888888 PP

        DRIM  457 ilenllrlydedevdlpekllktlsslfsrlkdreaRklLcevlkalakkdpe.l.eevadll 517 
                  +l    +      +   +k +  l + +s++ + + Rk+ +e+l+a+ +k+++ l +e adll
  CDO72673.1 2113 FLLDYPQG-----KGRLKKQMAFLVKNLSYVYE-SGRKSVMELLSAIIAKFETsLvQEYADLL 2169
                  88888877.....66677777777777777654.57888888888877666642357777775 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 0.92
        DRIM  131 avLrfLagl....seeelssFldlalgplkkvleaaetqgsdelkelvnkldevdleevlplrrqlgflnlledvlkelgsklapflpkllklllyc 223 
                  a+L  +a +    + e+l++Fl  +l+p                                                                     
  CDO72673.1 2476 AILKWFAAMasymEAEQLEHFLVHILSP--------------------------------------------------------------------- 2503
                  3333333322222334444444444444..................................................................... PP

        DRIM  224 laaaqrrlkssseeeeeeeeevlasllkniRqlglkcLvdlfsnfgesedwspyldaifeevvsPrlekLpsenlqspsaLlkLfltWsssprlapl 320 
                                                                                                                   
  CDO72673.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

        DRIM  321 LakydssvlpavielLsapkakesVvefvldivenllkladeeeeeeedeeeigselLlphvsslLeylsalleksaaskkdkskellereleiLsr 417 
                                                                                                                   
  CDO72673.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

        DRIM  418 laplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrlydedevdlpekllktlsslfsrlkdreaRklLcevlkalak 505 
                                                                                   ++++++d++ R + ++ lk+la 
  CDO72673.1 2504 -----------------------------------------------------------------VYRVVEDDTIRDSQMDELKTLAI 2526
                  .................................................................33333333333333333333332 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.44   6.6e+02     206     260 ..     261     314 ..     254     318 .. 0.85
   2 !   87.3   0.0   6.8e-28     1e-24       4     267 ..    2832    3130 ..    2830    3146 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.44
   Dynamin_M 206 palkcvelVyeelekiveklekelkrFpnLreeikevvedllreqeeptkemien 260
                  + +  +lV+  l+ ++++++   ++F    e+i +v +++++e  e+ ++ i +
  CDO72673.1 261 ASEDSFTLVRRVLTALIHHCKG-AEQFTPASEAIVSVFSEVVKEADEEKTSRILD 314
                 56777899***********977.468******************99988877765 PP

  == domain 2  score: 87.3 bits;  conditional E-value: 6.8e-28
   Dynamin_M    4 ilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkl....adkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekel 96  
                   ++n++ pL +G+++V+   ++ I ++ + ++a++ E+++F++ + +++l    +++ Gt+ L ++L+++L e +++ lP+++++++e+l+++ ++l
  CDO72673.1 2832 YIRNQDEPLTHGWFCVKQPDSRAIASGITWAQARQVERDYFDTVSPWSRLglehQNRLGTHKLVERLSDVLSEKVSQRLPSIQEELQELLATTDEQL 2928
                  689********************************************65433346899*************************************** PP

   Dynamin_M   97 eelgeskpsdeektklllqlitkfkedfkklieGe..sevstkelsggarireiFnetlekslekidpleelsd....................... 168 
                  ++l ++ ++  ++ + +l+l++ f++ + + +eG+  +   +  l+     ++ F + + ++  +++p+e  s                        
  CDO72673.1 2929 NKLPKPPSN--DALSEVLHLLSTFTKGLAQFLEGTpdA---DGLLQSIRPACDTFRQAIRATEPDFRPYESQSYqrdpgaykyvppsfllheegeym 3020
                  ****97655..89*********************9431...33344444466666665555555555555444355555666666666666666666 PP

   Dynamin_M  169 ..........eeirtairnsrGrelplfvpekaFealvkkqikkleepalkcvelVyeelekivek.lekelkrFpnLreeikevvedllreqeept 254 
                            +++    +++  relp  +p  + e  ++  i+++++p   + ++++  l k v+k ++++++++p L +++ ++++d+++ ++ +t
  CDO72673.1 3021 pkddssaifiDDVMRRAQQAITRELPHHYPFVVTEQYINAFIAQWRKPTEILFREIQRILVKHVKKfVSEHFSQYPILLSRVHSIISDFISASSGHT 3117
                  6666666777888888888888********************************************8888*************************** PP

   Dynamin_M  255 kemienliemela 267 
                   e++e +++ e+ 
  CDO72673.1 3118 IEHLEWFLALEKR 3130
                  ********99984 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.64   9.6e+02     118     159 ..    1817    1858 ..    1802    1866 .. 0.85
   2 !   41.2   0.0   1.1e-13   1.7e-10      62     167 ..    2706    2817 ..    2638    2818 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.64
                  TSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBT CS
   Dynamin_N  118 dqelvkeyikkadiilavtsanhdlsnsealflarevdpkgk 159 
                    +++ +yi++++i  ++++  + l ++e l++ ++v++  +
  CDO72673.1 1817 SFAILAKYITPQKISSLLLPIRSILQETETLKVMQQVEELLR 1858
                  448899******************************987665 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 1.1e-13
                  B--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-S..SSGTTS.......HHHHHHH.STTEEEEEEEETTS-CCC-CHH CS
   Dynamin_N   62 ledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGlds..vnkrdq.......elvkeyi.kkadiilavtsanhdlsnseal 148 
                   +df+++ ee ++  ++      ++s++ ++l+i +++ ++l++ DlPGl+     ++d+       elv + i ++++iil+ +++++d+ n+ a 
  CDO72673.1 2706 STDFDRFLEEDSELLDREL----NFSTNAVSLQISGPDIEDLSFCDLPGLIAsvGSAGDEgdidlvrELVSSWIeRPSCIILLTVACETDFQNQGAH 2798
                  3444444444433333333....667779*********************9843445555************************************* PP

                  HHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  149 flarevdpkgkrtivvltk 167 
                  +lar++dpkg rti+vltk
  CDO72673.1 2799 QLARAYDPKGLRTIGVLTK 2817
                  ******************9 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2         2     3e+03      20      40 ..     119     137 ..     113     151 .. 0.80
   2 ?   -0.3   0.0       1.1   1.7e+03       6      34 ..     225     253 ..     224     263 .. 0.86
   3 ?   -3.1   0.0       8.4   1.2e+04       4      28 ..     940     962 ..     940     967 .. 0.69
   4 !   11.6   0.0    0.0002       0.3       3      51 ..    1386    1438 ..    1385    1441 .. 0.92
   5 ?   -0.9   0.1       1.7   2.5e+03      25      48 ..    1690    1713 ..    1672    1717 .. 0.83
   6 ?    1.7   0.1      0.27     4e+02      36      53 ..    2323    2340 ..    2319    2342 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
     HEAT_EZ  20 ellqplvpeilpaLlalLndd 40 
                  +l+p+ p+il+ Ll+lL  +
  CDO72673.1 119 TTLAPEYPRILKRLLQLL--P 137
                 578999*********888..4 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLl 34 
                 a+aw + +++   +++l+++   ++ +L+
  CDO72673.1 225 ACAWIFVTACKSVSQTLHTATASLISPLV 253
                 789999999*******************9 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.4
     HEAT_EZ   4 RraAaw.aLGrlaggepellqplvpe 28 
                 RraA++  L+   g+ +e l++lv+ 
  CDO72673.1 940 RRAAILsSLA---GCTDEELPLLVDL 962
                 5666665665...8888888887765 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.0002
     HEAT_EZ    3 vRraAawaLGr....laggepellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                  +R +Aa aL r    +a +++e+ +++++++ p L ++L+++  +VRa  +g 
  CDO72673.1 1386 IRSNAATALKRfidfVADQRGEYEETFLKVLYPGLKNGLRSKTELVRAEILGV 1438
                  5889999****************************************977665 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.7
     HEAT_EZ   25 lvpeilpaLlalLnddsdeVRaaA 48  
                  +++++l  L + L+++s+e+R  A
  CDO72673.1 1690 QISKLLTVLSQVLRSKSQETRDLA 1713
                  78899****************987 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.27
     HEAT_EZ   36 lLnddsdeVRaaAagaLg 53  
                  lL  +++ VR+aA++ Lg
  CDO72673.1 2323 LLLFPHAWVRTAACRLLG 2340
                  555677779********9 PP

>> KIND  Kinase non-catalytic C-lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.8e-06      0.01     107     171 ..    1018    1085 ..    1010    1089 .. 0.86
   2 ?   -2.4   0.0       2.5   3.7e+03     120     139 ..    2419    2438 ..    2372    2497 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.8e-06
                  HHHHHHHHTT----.--....-------------------SS-----SHHHHHHHHHHTSSSGGGHHH CS
        KIND  107 LEeLidlmtnadee.ees..etkDEGyeaeeeeeeeedeektessvrtlkdvlklCashlpepseaee 171 
                  LE+L+dl++na+ + +++  +  DEG e++ e e+e++ +++  s+rtl+ + kl  ++l++  +a+ 
  CDO72673.1 1018 LETLLDLIANAQASlDGQkdDRVDEGAEEDAEAEDEDQGAESSASSRTLRSIRKLGLKRLADFFRAPI 1085
                  89********9998843334899*********99999999****************999998777665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
                  ---..--------------- CS
        KIND  120 eeesetkDEGyeaeeeeeee 139 
                  +e+s+ +D G e+++ e+e+
  CDO72673.1 2419 DETSSDEDSGDEDDQGEDEH 2438
                  12222333344444433333 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0027       4.1      49      99 ..     101     152 ..     100     183 .. 0.90
   2 ?   -2.5   0.0         2     3e+03      84     113 ..    1182    1211 ..    1179    1214 .. 0.87
   3 ?    0.7   0.1      0.22   3.3e+02      52     126 ..    1248    1322 ..    1230    1339 .. 0.80
   4 ?    4.9   0.1     0.012        17      51     152 ..    2124    2230 ..    2116    2244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
     CLASP_N  49 eclkqlleailkalssLrttlsstgchllkelaiqlkeqldpm.veillptL 99 
                 e+l+ ll+++ k +++Lrttl  +   +lk+l++ l +++ +  + +ll t+
  CDO72673.1 101 EGLRALLDLFQKLAHDLRTTLAPEYPRILKRLLQLLPRSISAEaLTALLATF 152
                 5799********************************9998766566666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
     CLASP_N   84 lkeqldpmveillptLlkllgdtKkiisqn 113 
                  l++ ++p v +ll +L +l++  K ++s+ 
  CDO72673.1 1182 LETVFKPHVSRLLANLTTLVSRSKGVTSAV 1211
                  6677999*******************9986 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.22
     CLASP_N   52 kqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas 126 
                  ++  +a+ ++++   t++  ++  l++el+  + e + +    l +++ +l + +  i+  +a+ +la +   ++
  CDO72673.1 1248 RKPHKAVPEKVKVDMTSILRNLFPLIQELSDAESEPFVKTYALLSQLFQTLRSRQARIALVKAFRCLAEVQPLIT 1322
                  5555667777777789999999*************9999999999999999999999999999999988766555 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.012
     CLASP_N   51 lkqlleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllg.dtKkiisqnanqalaallsnasfspri...lqvlsvalqdK 142 
                  lk+ +  ++k+ls ++ ++ +  ++ll+ ++  ++++ ++++++ l+  L+ +++ d     ++ a+  +++ll  ++ ++r     +v s a+q+ 
  CDO72673.1 2124 LKKQMAFLVKNLSYVYESGRKSVMELLSAIIAKFETSlVQEYADLLFVGLVMVIAnDESTKCREMAAELIKSLLGRLETTQRNlimSHVHSWAVQQT 2220
                  6777788899999999999999999**999999999988899**99999998876256678999999999999999998887533335556677777 PP

     CLASP_N  143 nvqpReysai 152 
                   +q+  +sa+
  CDO72673.1 2221 QPQLTRVSAQ 2230
                  7776666665 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.1   3.1e+03       1      21 [.    1269    1290 ..    1269    1292 .. 0.76
   2 ?    2.6   0.0      0.14   2.1e+02       6      29 ..    1375    1399 ..    1370    1401 .. 0.80
   3 ?   -0.2   0.1       1.1   1.7e+03       1      28 [.    1694    1721 ..    1694    1723 .. 0.89
   4 ?    3.6   0.0     0.067        99       6      27 ..    2175    2196 ..    2170    2199 .. 0.82
   5 ?    2.8   0.1      0.12   1.8e+02      12      28 ..    2327    2343 ..    2327    2346 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.1
                  HHHHHHHHHT-..SSHHHHHHHH CS
        HEAT    1 llPlllkllsD..pspeVReaAa 21  
                  l+Pl+++l sD  ++p+V   A+
  CDO72673.1 1269 LFPLIQEL-SDaeSEPFVKTYAL 1290
                  78*****5.77678888887776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
                  HHHHT-SSHH.HHHHHHHHHHHHHH CS
        HEAT    6 lkllsDpspe.VReaAakaLgalae 29  
                  l+ ++Dp    +R++Aa aL +++ 
  CDO72673.1 1375 LSFIQDPVELtIRSNAATALKRFID 1399
                  666789888878********99976 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  ll +l + l+++s e R+ A ++L+++a
  CDO72673.1 1694 LLTVLSQVLRSKSQETRDLARETLCRIA 1721
                  567788889****************997 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.067
                  HHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    6 lkllsDpspeVReaAakaLgal 27  
                  +   +D+s + Re+Aa+ +  l
  CDO72673.1 2175 MVIANDESTKCREMAAELIKSL 2196
                  55579************99877 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.12
                  SSHHHHHHHHHHHHHHH CS
        HEAT   12 pspeVReaAakaLgala 28  
                  p++ VR aA++ Lg l+
  CDO72673.1 2327 PHAWVRTAACRLLGMLY 2343
                  5778**********986 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.5   3.7e+03      37     133 ..     246     305 ..     197     348 .. 0.56
   2 ?    1.9   0.0     0.089   1.3e+02      13      75 ..    1477    1542 ..    1470    1586 .. 0.72
   3 ?   12.4   0.4   5.6e-05     0.084      10     133 ..    2016    2178 ..    2012    2206 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
     MMS19_N  37 eeevevLvqFflsrledfavlkealkgllaLlrl....kkfsaee..avevlralfeevhvqslaqadRklvyelldallekhrealkelgedflegfv 129
                 ++ ++ Lv+F l+  + ++++  + + l+aL+++    ++f++++  +v+v++                                            +v
  CDO72673.1 246 ASLISPLVRFHLTSDASEDSFTLVRRVLTALIHHckgaEQFTPASeaIVSVFS-------------------------------------------EVV 301
                 44444444444444443333333444444444221111222111112233333...........................................333 PP

     MMS19_N 130 elvd 133
                 + +d
  CDO72673.1 302 KEAD 305
                 3333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.089
     MMS19_N   13 dkvRakavslLaevlsrlp..kkklseeevevLvqFflsrle.dfavlkealkgllaLlrlkkfsa 75  
                   ++R++a++ Lae +++ +  +++l e  + ++ ++++s  + d+ +++ea+ + ++++++ ++ a
  CDO72673.1 1477 IHRRTRAIRRLAEYAEQGHlrSTTLAEIFIPLVGNYIASTESvDHHLVNEAILATSQMAKHLNWGA 1542
                  579***********99876425577777778888888888889****************8754433 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 5.6e-05
     MMS19_N   10 seddkvRakavslLaevlsrlpkkklseeevevLvqFflsrledfavlkealkgllaLlrl..................kkfsaeeavevlra.... 84  
                  s++ ++ + a ++La++l++ p+ +++e+++  L++ ++  le+ +  ++++  l+a++ +                   + ++ +++e++r     
  CDO72673.1 2016 STEPDTVQTAFKFLATILREHPSAQVKEKDLVYLLELLAPDLEEPERQAAVFTMLRAIIARrfvvpeiydimgkvaeimVTSQSPQVQELCRGallq 2112
                  567778899*************88***********************************55333333333333333333222333344444447777 PP

     MMS19_N   85 ..................lfeevhvqslaqadRklvyelldallekhreal.kelgedflegfvelvd 133 
                                    l++  +++   ++ Rk+v+ell+a+++k++++l +e  + ++ g+v ++ 
  CDO72673.1 2113 flldypqgkgrlkkqmafLVK--NLSYVYESGRKSVMELLSAIIAKFETSLvQEYADLLFVGLVMVIA 2178
                  777777777776666532333..46668999******************9988888854555554443 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.3   7.9e+03      51      71 ..    2702    2722 ..    2690    2729 .. 0.79
   2 ?   12.4   0.0   8.6e-05      0.13      19      91 ..    3232    3311 ..    3214    3312 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.3
                  CTTSGGGHHHHT---SCHCCC CS
         GED   51 kLykkedldeLLkEdeeiaek 71  
                   L  + d+d++L+Ed+e+ ++
  CDO72673.1 2702 ILNPSTDFDRFLEEDSELLDR 2722
                  5667889********998765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.6e-05
                  HHHHHHHHHHHHHHHHHHTHHH..HCCCCCHHHCCTTSGGG.....HHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCH CS
         GED   19 ivrktiadqiPkaimhllvnea..keslqkellakLykked.....ldeLLkEdeeiaekRkelkkrlealkkAreilse 91  
                  ++ k+ +d+i  ai + lv  +  ++ l+k+l + L   +      ++e ++E  ++ e+R+el k+ e+l+ Ar+ l e
  CDO72673.1 3232 VAYKRFSDNIAMAIDYELVFGLdrGQALEKALRSGLGIGSPegharCKEYIQEPRHVFERREELMKKRERLETARRKLME 3311
                  3578999999999999999766225789999999987655555777*****************************99865 PP

>> Bcl-2  Apoptosis regulator proteins, Bcl-2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.7     7e+03       8      61 ..     187     241 ..     182     313 .. 0.66
   2 ?    1.8   0.0      0.26   3.9e+02      30      81 ..    1521    1572 ..    1495    1577 .. 0.72
   3 ?    7.0   0.0    0.0065       9.7      29      67 ..    2298    2336 ..    2278    2367 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.7
                 CHHHHHHHHHHHCHHHHH....SSHCHHHHHHHHCCTTS--SCHHHHHHHHHHHHH CS
       Bcl-2   8 leekhqeefsrllnrlels..eealelfakvaeelfsdgelnWgrvvalfafagal 61 
                 +++   e + + l+rl+++  e+ ++++a+  +e++ d  + W  v a   + ++l
  CDO72673.1 187 VQRATAEVWGATLRRLKIAlrEDCVRILAASSNEVLGDA-CAWIFVTACKSVSQTL 241
                 566666666666777777443455555777777777774.7776665555555544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.26
                  HCHHHHHHHHCCT.TS--SCHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHH CS
       Bcl-2   30 lelfakvaeelfs.dgelnWgrvvalfafagalaerlvrdglpellrrlvell 81  
                  ++l+++ + +  +  ++lnWg   al+    +la++   + ++ ++r++v++l
  CDO72673.1 1521 HHLVNEAILATSQmAKHLNWGAYYALVQRYLKLARQKDAS-EKVYVRAIVAIL 1572
                  45555555555555458****************9996665.666788888876 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0065
                  SHCHHHHHHHHCCTTS--SCHHHHHHHHHHHHHHHHHHH CS
       Bcl-2   29 alelfakvaeelfsdgelnWgrvvalfafagalaerlvr 67  
                   +++++  a+ + +++++nW+ vv+l+ f  a ++++++
  CDO72673.1 2298 LHKVLRDRADVITQEDKVNWSSVVSLLLFPHAWVRTAAC 2336
                  45678888999999778**********997776666555 PP

>> Condensin2nSMC  Condensin II non structural maintenance of chromosomes subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.32   4.7e+02      50     109 ..     225     285 ..     159     296 .. 0.75
   2 ?    4.7   0.0      0.02        30     111     148 ..    1236    1273 ..    1210    1274 .. 0.91
   3 ?   -3.1   0.0       5.5   8.3e+03      76     141 ..    1379    1439 ..    1373    1442 .. 0.70
   4 ?   -1.2   0.0       1.4   2.1e+03      88     119 ..    1831    1862 ..    1801    1864 .. 0.80
   5 ?    0.9   0.1      0.32   4.8e+02      29      63 ..    2143    2177 ..    2125    2236 .. 0.69
   6 ?    3.6   0.1     0.047        70      27     104 ..    3032    3112 ..    3010    3122 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.32
  Condensin2nSMC  50 aygeilfraWkkasgelkeeieesciqdlmeaalhakr.kklakklrkvLsafhsk.kkeke 109
                     a + i+++a k +s++l++    s+i+ l++  l+++  +  ++ +r+vL+a++++ k  ++
      CDO72673.1 225 ACAWIFVTACKSVSQTLHTAT-ASLISPLVRFHLTSDAsEDSFTLVRRVLTALIHHcKGAEQ 285
                     334456666665555554444.8889999999998887788999999999999887776665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.02
  Condensin2nSMC  111 eemlvrlyepilwrsLkvanskvRanAaelladaFPle 148 
                       +ml+ l +p+l +  k+   kv+ + +++l ++FPl+
      CDO72673.1 1236 AKMLLDLFSPLLRKPHKAVPEKVKVDMTSILRNLFPLI 1273
                      58**********************************97 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.5
  Condensin2nSMC   76 qdlmeaalhakrkklakklrkvLsafhskkkekeveemlvrlyepilwrsLkvanskvRanAaell 141 
                      qd +e +++++   +a++l+++++  + +  + e ee+ ++++ p l   L+++   vRa+ + ++
      CDO72673.1 1379 QDPVELTIRSN---AATALKRFIDFVADQ--RGEYEETFLKVLYPGLKNGLRSKTELVRAEILGVF 1439
                      44444444444...777777777777774..45678899999999999999999999998877777 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.4
  Condensin2nSMC   88 kklakklrkvLsafhskkkekeveemlvrlye 119 
                      ++l   +r++L++  + k  ++vee+l r+ +
      CDO72673.1 1831 SSLLLPIRSILQETETLKVMQQVEELLRRIAS 1862
                      677778999****9999*********999876 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.32
  Condensin2nSMC   29 ikeilkaiksqipkleksvleaygeilfraWkkas 63  
                       k +++++   i k+e+s++++y+++lf   +++ 
      CDO72673.1 2143 RKSVMELLSAIIAKFETSLVQEYADLLFVGLVMVI 2177
                      57788999999***************998766543 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.047
  Condensin2nSMC   27 klikeilkaiksqipklek.svleaygeilfraWkkasgelkeeieesciqdlmeaalhakr...kklakklrkvLsafhsk 104 
                      ++++ + +ai  ++p+     v+e+y ++++  W+k ++ l +ei+  ++ + +++ +  +    + l +++ +++s f+s 
      CDO72673.1 3032 DVMRRAQQAITRELPHHYPfVVTEQYINAFIAQWRKPTEILFREIQ-RILVKHVKKFVSEHFsqyPILLSRVHSIISDFISA 3112
                      6777888899999976554388999999999999999999888884.44444444444444333377777888888888776 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.36   5.3e+02      14      56 ..    2509    2551 ..    2504    2562 .. 0.83
   2 ?    6.3   0.7    0.0099        15      10      74 ..    2900    2971 ..    2892    2974 .. 0.75
   3 ?   -1.5   0.0       2.6   3.9e+03      55      83 .]    3166    3194 ..    3156    3194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.36
     DUF4404   14 qnesldeetralLeslaedieellaeedaaaeeeelaerlnea 56  
                  +++++ +++ ++L++la +++ l++++  +++ +++ +++++ 
  CDO72673.1 2509 EDDTIRDSQMDELKTLAIELQDLVQSKVGTSKFANVYNGIRQK 2551
                  689999*******************998888776666666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0099
     DUF4404   10 eeLe.....qnesldeetralLeslaedieellaeedaaaeeee..laerlneaverFeeeHPklagvlrei 74  
                  + L+     + +s++ee ++lL++ +e++++l +  ++ a +e   l  + ++ +++F e  P+++g+l++i
  CDO72673.1 2900 DVLSekvsqRLPSIQEELQELLATTDEQLNKLPKPPSNDALSEVlhLLSTFTKGLAQFLEGTPDADGLLQSI 2971
                  44443332356789999999999999999977776666666655889999999999**99999999999988 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.6
     DUF4404   55 eaverFeeeHPklagvlreildsLanmGi 83  
                  + +er+ ee  ++++ ++++l+ L+++G+
  CDO72673.1 3166 NKLERYMEEQSEMQKYINRVLNGLTDIGL 3194
                  56788888999999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.62u 0.37s 00:00:01.99 Elapsed: 00:00:00.53
# Mc/sec: 18653.37
//
Query:       CDO72674.1  [L=530]
Description: hypothetical protein BN946_scf184985.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-121  405.4  24.9   3.5e-121  405.2  24.9    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.6e-18   65.3  42.3    7.1e-14   51.5  15.4    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.2  24.9  3.9e-125  3.5e-121       2     451 ..      26     485 ..      25     486 .. 0.94

  Alignments for each domain:
  == domain 1  score: 405.2 bits;  conditional E-value: 3.9e-125
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 + +aa+gg+lfgYdtg+i++++ + + +k fg+  s+ss+     +++ +l+vsi+++G ++G++ + +++d +GR+ ++++++++f+ g  lq  a+ 
  CDO72674.1  26 TAFAAFGGMLFGYDTGTIAGIIQMEDWIKTFGVRDSNSSTGYslPTSRESLVVSILSAGTFLGAMSGAPAADSLGRRIGIMVSCMVFSLGVTLQTGAH- 123
                 6789*****************************999999888789*****************************************************. PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPry 197
                   ++  ++vgR+++G+gvGl+s+l+Pmy+sE +pk +Rga+vs+yq+ait+G l+aa+++ ++++ +n++ w+i + +ql++a +l++++++lPE+Pr+
  CDO72674.1 124 --NLATFVVGRFFAGFGVGLVSTLIPMYQSECSPKWIRGAIVSCYQWAITIGLLLAAVINNATKDRHNHSAWQISISMQLIWAFVLFVGMIWLPETPRW 220
                 ..9************************************************************999999****************************** PP

                 HHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHH CS
    Sugar_tr 198 lvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksl 290
                 l++ ++ ++a + la+lr  +++d+ ++ e +++  + e+e     + +++++ s+++ +  r+ +g++lq++qqltG+n+i yy+ t+f ++g+++++
  CDO72674.1 221 LIKMNRPDDAAKALARLRSLPENDPVVQSELAEITSALEAErgmgqSSYLDCFRSTHNkIALRTYTGIALQAWQQLTGVNFISYYGITFFTSAGIQNPF 319
                 ****************999966666666666666666665566667777888888888999************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRska 387
                 l+++ + +vn+ +t+ +++ vdrfGRR lll+Ga+ m++c  +++  +v++ +++   a + ++i  +++++  fa++wgpv wv+v E+fp++vR+k+
  CDO72674.1 320 LISVAINIVNMGMTLPGMWAVDRFGRRSLLLWGAVLMCVCEYLVAilGVTISINNL--AGQRALIGIVCIYVGTFAATWGPVAWVIVGEIFPLNVRAKG 416
                 *****************************************999954444444444..899999999******************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 388 laiavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                 +++++a+nwl+n + ++ +p+++++ +     g +vf+++++ ++  iif++f++petkg++le+i+ l
  CDO72674.1 417 ISLSAASNWLWNWALAFATPYLVNSGKgdaglGVKVFFIWGSTCAGCIIFTYFCIPETKGLSLEQIDLL 485
                 *****************************************************************9865 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5  15.4     8e-18   7.1e-14       2     189 ..      30     239 ..      29     320 .. 0.77
   2 !   17.6  21.0   1.5e-07    0.0014      39     176 ..     323     475 ..     297     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 8e-18
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg...........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwl 87 
                 +++++l +++ ++++ ++ +    +++g           +  s  +l++++ ++g++++++ +++ +d +Grr  ++++  +f+lg +l    a++l +
  CDO72674.1  30 AFGGMLFGYDTGTIAGIIQMeDWIKTFGvrdsnsstgysLPTSRESLVVSILSAGTFLGAMSGAPAADSLGRRIGIMVSCMVFSLGvTLQTG-AHNLAT 127
                 68999999999999999999988889996655444443333333556***************************666666666666234444.39988* PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrks 183
                 ++v+r+++G+g g++ +++  + ++ +pk  rg  +++++ ++ +G +l++++  +  +  +   W+ +  +  i ++++fv     ++ ++++r+  +
  CDO72674.1 128 FVVGRFFAGFGVGLVSTLIPMYQSECSPKWIRGAIVSCYQWAITIGLLLAAVINNATKDRHNhsaWQISISMQLIWAFVLFV---GMIWLPETPRWLIK 223
                 *******************************************************9999888999**************999...77777777777777 PP

       MFS_1 184 pkeee..........k 189
                   +            +
  CDO72674.1 224 MNRPDdaakalarlrS 239
                 6666444555544441 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.5e-07
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa........sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                 ++  ++ + ++lp+++ +drfGrr++ll+g++l++++  l+++++        ++   l+ ++ +  G +a++  p++ +++ ++fp + r+++i+l +
  CDO72674.1 323 VAINIVNMGMTLPGMWAVDRFGRRSLLLWGAVLMCVCeYLVAILGvtisinnlAGQRaLIGIVCIYVGTFAATWGPVAWVIVGEIFPLNVRAKGISLSA 421
                 44567788999**************************7666666234445444334433444445788888999************************* PP

       MFS_1 128 agfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeep 176
                 a++ l     + + ++l+ s+         vf+i +  ++ ++++ ++ +pe++
  CDO72674.1 422 ASNWLWNWALAFATPYLVNSGKgdaglGVKVFFIWGSTCAGCIIFTYFCIPETK 475
                 *999999888899999995555688775567***********997666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3639.16
//
Query:       CDO72675.1  [L=549]
Description: hypothetical protein BN946_scf184985.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-121  406.9  17.5   1.2e-121  406.7  17.5    1.0  1  Sugar_tr  Sugar (and other) transporter
    5.5e-20   71.6  41.1    3.2e-17   62.5  12.4    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.7  17.5  1.4e-125  1.2e-121       2     451 ..      35     494 ..      34     495 .. 0.96

  Alignments for each domain:
  == domain 1  score: 406.7 bits;  conditional E-value: 1.4e-125
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 + +aa+gg+lfgYdtg+i + l++ + +k fg   +++s+     +++ +livsi+++G +iG+l++ +++d+fGR+ s++ ++++f+ g +lq  a  
  CDO72675.1  35 TAFAAFGGVLFGYDTGTIQGLLEMRDWLKTFGEPDYSASTGFslPTSRESLIVSILSAGTFIGALVGAPMADIFGRRRSIMLSCLVFSLGVALQTGAA- 132
                 6789**********************9999998888877665779*****************************************************. PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPry 197
                   ++  ++ gR+++G+gvG++s+lvP+y+sE Apk +Rg lvs+yq+ait+G+l+aai++ ++++  n++ w+i +++ql++al+l++++++lPE+Pr+
  CDO72675.1 133 --NLATFVCGRFFAGLGVGFISTLVPIYQSECAPKGIRGGLVSCYQWAITVGQLLAAIVNNATKNRPNHSSWQISIAVQLMWALILFVGMFWLPETPRW 229
                 ..9************************************************************999999****************************** PP

                 HHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHH CS
    Sugar_tr 198 lvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksl 290
                 lv+ +++++a  +l++lr  +++d+ +++e +++  + ++e     + +++++    + +  r+++g+++q++qql Gin+i yy+ t++ ++g+++++
  CDO72675.1 230 LVKEDRTDDAADSLSRLRSLPKEDPTVQNELEEIVSGLRQErdagiNSYLDCFRMGPNkIAFRTFTGIAVQAWQQLAGINFIAYYGVTFYTSAGINNPF 328
                 ********************9999999988888888877778788777777777777799*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskala 389
                 l++i v  v   +tf+++f+ d +GRR+ll++Ga+ m+ic  +++i  l l++ + aa+ ++++++a++ia+fa +wgpv wv+  E+fp+++R+k+ +
  CDO72675.1 329 LISIAVALVASGMTFISMFVTDTLGRRPLLFWGAVAMCICEYLIAILGLTLPSDNIAAQKALVALVAIYIAAFASTWGPVAWVITGEIFPLELRAKGVS 427
                 *********************************************888888888899****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 390 iavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                 +++a+nw++n + ++ +p+++++       g +vf+v+++ +v  ++f++f++petkg++le+++ +
  CDO72675.1 428 LSAASNWIWNWALAFATPYLVNSGRgdaglGVKVFFVWGSTCVGCAVFTYFCIPETKGLSLEQVDLV 494
                 ***********************999**99*********************************9866 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5  12.4   3.5e-21   3.2e-17       3     189 ..      40     248 ..      38     322 .. 0.74
   2 !   11.6  24.0   1.1e-05     0.095      37     176 ..     330     484 ..     293     502 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 3.5e-21
       MFS_1   3 laaflsalarsilgpalpl.alaedlg...........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwll 88 
                 ++++l +++ +++  +l +    +++g           +  s  +l++++ ++g+++++l++++++d fGrrr ++l+ l+f+lg +l    a++l ++
  CDO72675.1  40 FGGVLFGYDTGTIQGLLEMrDWLKTFGepdysastgfsLPTSRESLIVSILSAGTFIGALVGAPMADIFGRRRSIMLSCLVFSLGvALQTG-AANLATF 137
                 6666677777777777766666666665554333333233333577***************************999999999999344444.38988** PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrksp 184
                 + +r+++Glg g++ +++ ++ ++ +pk  rg  +++++ ++ +G +l++++  +     +   W+ +  +    +l++fv     ++ ++++r+ +++
  CDO72675.1 138 VCGRFFAGLGVGFISTLVPIYQSECAPKGIRGGLVSCYQWAITVGQLLAAIVNNATKNRPNhssWQISIAVQLMWALILFV---GMFWLPETPRWLVKE 233
                 ****************************************************999886666778**************999...666666666666655 PP

       MFS_1 185 keee..........k 189
                  +            +
  CDO72675.1 234 DRTDdaadslsrlrS 248
                 444334555555551 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.1e-05
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf..a.......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraig 124
                 +  ++al+a+ ++++ ++++d +Grr++l++g+++++++  l++++  +       +    l++++ +  +++a++  p++ +++ ++fp e r+++++
  CDO72675.1 330 ISIAVALVASGMTFISMFVTDTLGRRPLLFWGAVAMCICeYLIAILglTlpsdniaA-QKaLVALVAIYIAAFASTWGPVAWVITGEIFPLELRAKGVS 427
                 4455888899999999***********************666666543254444422.33357777777888889************************ PP

       MFS_1 125 llsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeep 176
                 l +a++ +     + + ++l+ s+         vf++ +  ++ ++v+ ++ +pe++
  CDO72675.1 428 LSAASNWIWNWALAFATPYLVNSGRgdaglGVKVFFVWGSTCVGCAVFTYFCIPETK 484
                 ****99999988889999999554468877556799999999999998666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3748.46
//
Query:       CDO72676.1  [L=686]
Description: hypothetical protein BN946_scf184985.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-18   64.9   0.0    2.1e-17   63.5   0.0    1.6  1  AAA_30           AAA domain
    2.1e-14   54.0   0.0    7.1e-07   29.3   0.0    2.3  2  AAA_11           AAA domain
    1.3e-13   51.0   0.0    3.2e-13   49.7   0.0    1.6  1  AAA_12           AAA domain
    3.8e-12   46.8   0.0    1.3e-11   45.1   0.0    1.8  1  AAA_19           AAA domain
    4.4e-05   23.9   0.0    9.2e-05   22.9   0.0    1.5  1  AAA_16           AAA ATPase domain
    0.00075   19.3   0.0        1.4    8.6   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00075   19.4   0.1       0.35   10.8   0.0    2.4  2  NACHT            NACHT domain
     0.0018   17.8   0.0     0.0043   16.5   0.0    1.6  1  PhoH             PhoH-like protein
     0.0023   18.2   0.0      0.015   15.6   0.0    2.1  2  AAA_22           AAA domain
     0.0068   16.8   0.0      0.016   15.6   0.0    1.7  1  AAA              ATPase family associated with various cellul
     0.0092   15.8   0.0      0.048   13.5   0.0    2.0  1  Helicase_RecD    Helicase
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.022   13.8   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.03   14.5   0.0      0.058   13.6   0.0    1.6  1  AAA_33           AAA domain
      0.044   13.4   0.0        1.3    8.6   0.0    2.3  2  SRP54            SRP54-type protein, GTPase domain
       0.05   13.1   0.0        3.9    6.9   0.0    2.3  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
       0.08   12.9   0.0       0.14   12.2   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   1.9e-20   2.1e-17       2     130 ..     364     545 ..     363     554 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.9e-20
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.....................eelgieastiakllkr 79 
                 ln +Qa++v+a+ + ++ +++++Gp+GtGKtt+++a+  +we++  +v ++A ++   k++a                                     
  CDO72676.1 364 LNGSQAQVVAAMRSLEEPLVIVHGPPGTGKTTTIAAALYLWEQEYSPVWVIAQSNVGVKNIArtlikrgidfklivskefyveW--------------- 447
                 899*********************************************************994444433333222222222220............... PP

      AAA_30  80 lk.................................................grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQla 129
                                                                    g  r+ p + l+vDEa+ +dt ++ +l+ + ++   k+ + GD++Ql+
  CDO72676.1 448 -HehlyeeleerlirsdelisdpveterkirgslvvlctiamlsnpaiddsGVFRFVPMERLLVDEASQIDTFEFMHLFHKFRD-LQKICMFGDPKQLP 544
                 .234455666777777778888888888888888899999999999*****8899****************************9.99***********9 PP

      AAA_30 130 s 130
                 +
  CDO72676.1 545 P 545
                 8 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   6.3e-10   7.1e-07       2      76 ..     364     430 ..     363     442 .. 0.83
   2 !   22.4   0.0   7.8e-08   8.7e-05     190     256 ..     473     545 ..     441     549 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 6.3e-10
      AAA_11   2 lndsqreaiksalsese.itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                 ln sq++ ++ + s +e +++++GPPGtgKT+ti++ l            +++   + v a+SN+ v +++  l++
  CDO72676.1 364 LNGSQAQVVAAMRSLEEpLVIVHGPPGTGKTTTIAAALYLW---------EQEYSPVWVIAQSNVGVKNIARTLIK 430
                 89999999966655444479*****************9999.........56778899*************99998 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 7.8e-08
      AAA_11 190 eevldeaeivltTlsgagsklleklak....kfdvviIDEAaqavEpstliPl..rlgakkvvLvGDpkQLpa 256
                 e  ++ + +vl+T +  +++++++        ++ +++DEA+q    + +  +  ++  +k+ + GDpkQLp+
  CDO72676.1 473 ERKIRGSLVVLCTIAMLSNPAIDDSGVfrfvPMERLLVDEASQIDTFEFMHLFhkFRDLQKICMFGDPKQLPP 545
                 56678889****************97688889999********8776666655335566*************9 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.9e-16   3.2e-13      14     154 ..     564     680 ..     555     685 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.9e-16
      AAA_12  14 kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklvekllkkgseeerk 112
                 k++  +L++qYRm   + +f sk++Y++kL++++++++r                ++dv k +ee+    +s+ N eEa++vv++v+++++  +     
  CDO72676.1 564 KRAAYFLNMQYRMPTPLGDFISKQVYDSKLRSEHKISDRGAV------------RLVDVRKGREEQVG--SSWKNLEEARAVVNIVKNYYQYLEF---- 644
                 567899*************************99988887765............99*****9999998..7****************99987655.... PP

      AAA_12 113 kigvitpYraqvellkkklkekeeeksekeievntvdgfQGr 154
                   +vitpY aq   + + lk++         +v  vd+fQG 
  CDO72676.1 645 --CVITPYDAQRAEIVRLLKAEGLPW----ERVYNVDSFQGV 680
                 ..5*****************665554....48*********5 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   1.1e-14   1.3e-11       4     145 ..     374     547 ..     370     548 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.1e-14
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.................................. 68 
                 a++ l+e++++v ++pGtGKT+++ +++ l++++      ++ ++a  +  +k+++  l + g +                                  
  CDO72676.1 374 AMRSLEEPLVIVHGPPGTGKTTTIAAALYLWEQEY----SPVWVIAQSNVGVKNIARTLIKRGIDfklivskefyvewhehlyeeleerlirsdelisd 468
                 445899********************999999988....79***************9995544448899999998888888888888888888888888 PP

      AAA_19  69 ..............atTiHrlalldfddlltealelleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyvf 145
                                +Ti  l++ ++dd     + +         +   e l+vDE++++d    ++L+++   + +k++++GDp+Ql++ +
  CDO72676.1 469 pveterkirgslvvLCTIAMLSNPAIDDSG--VFRF---------V-PMERLLVDEASQIDtFEFMHLFHKFR-DLQKICMFGDPKQLPPYG 547
                 888888888888877888877777777766..3333.........4.56789*********99*********9.5566***********977 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   8.2e-08   9.2e-05      19     106 ..     375     456 ..     368     515 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.2e-08
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdg..giflrgkcdqlesaipysalaqalareel.lrqlldeaesaeleawrekleeala 106
                  rs +++lv+++G++G+GK++ + ++l  +e+++  ++++++ ++   ++     +a++l ++++ ++ + ++       +w+e+l e+l+
  CDO72676.1 375 MRSLEEPLVIVHGPPGTGKTTTIAAALYLWEQEYspVWVIAQSNVGV-KN-----IARTLIKRGIdFKLIVSK---EFYVEWHEHLYEELE 456
                 4455669****************999989999954466677776666.33.....444333322213333333...244566666666666 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0016       1.7       2      19 ..     384     401 ..     383     415 .. 0.89
   2 !    8.6   0.0    0.0012       1.4      63     115 ..     505     555 ..     490     628 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
  Viral_helicase1   2 vvhGvpGcGKStlirkll 19 
                      +vhG pG GK+t i  +l
       CDO72676.1 384 IVHGPPGTGKTTTIAAAL 401
                      8***********997665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
  Viral_helicase1  63 gkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahlp 115
                       ++l++DE+ + ++ ++    ++   ++ +++fGDp+Q p   ++     ++++
       CDO72676.1 505 MERLLVDEASQIDTFEFMHlFHKFRDLQKICMFGDPKQLPPYGKE---TAPDIK 555
                      799*********986665546777899***********9965433...233333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0083       9.3     105     156 ..     172     223 ..     154     229 .. 0.82
   2 !   10.8   0.0   0.00031      0.35       2      29 ..     382     409 ..     381     413 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0083
                 ....HHHHHCTTTTT--EEEEEEECCCHHH.HCTTSSCE..EEEE--TCCHHH CS
       NACHT 105 vrtlLselirkkllpeasllltvrpralrd.leeqleeaivlevegfsesrrk 156
                 +r +Ls  + k +++e+s+ l vr+r l+d   e+l++   l ve ++++r +
  CDO72676.1 172 LRAWLSAVLAKDSFQEVSCALRVRTRLLEDsHLECLSQL-LLNVELLEAERPT 223
                 689*************************99555666666.7777777777655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00031
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                 lvi++G++G GKTt ++    +w +++ 
  CDO72676.1 382 LVIVHGPPGTGKTTTIAAALYLWEQEYS 409
                 69***************99999999875 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.9e-06    0.0043       6      61 ..     365     421 ..     363     549 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.9e-06
                 SHHHHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T CS
        PhoH   6 tkeQkeylealk..kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea 61 
                 + +Q++++ a++  ++ +v++ Gp GtGKt  ++a+a+ +++++     ++++ +v +
  CDO72676.1 365 NGSQAQVVAAMRslEEPLVIVHGPPGTGKTT-TIAAALYLWEQEYSPVWVIAQSNVGV 421
                 568*********88888************96.78888888888877777777777654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-05     0.015       6      32 ..     381     407 ..     376     463 .. 0.84
   2 ?   -0.6   0.0       1.3   1.5e+03      93     117 ..     506     530 ..     491     543 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldee 32 
                  +++v+G++GtGKTt+++  l+  ++e
  CDO72676.1 381 PLVIVHGPPGTGKTTTIAAALYLWEQE 407
                 5789************98877765554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
      AAA_22  93 elliiDEaqhlrseealeeLrslln 117
                 e l++DEa  +++ e +  ++++ +
  CDO72676.1 506 ERLLVDEASQIDTFEFMHLFHKFRD 530
                 5699******964444444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-05     0.016       1      18 [.     383     400 ..     383     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                 EEEESSTTSSHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakav 18 
                 v+++GppGtGKT+++ a 
  CDO72676.1 383 VIVHGPPGTGKTTTIAAA 400
                 689**********99875 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.3e-05     0.048       2     104 ..     385     518 ..     384     533 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke.......................eekkkkaekaelrvr.. 72 
                    + + +G+GK+++++ al  + ++++s ++v a s+  vk++ + l+k   + +l                                       +  
     CDO72676.1 385 VHGPPGTGKTTTIAAALYLW-EQEYSPVWVIAQSNVGVKNIARTLIKRGIDFKLIVskefyvewhehlyeeleerlirsD-------------Eli 466
                    67899********9988655.55699***************999987644333332334655555444444433333221.............022 PP

  Helicase_RecD  73 ................kqrieyiapdellklkeqa............dllvvDEAAaipl 104
                                     ++i  ++          a            + l+vDEA++i++
     CDO72676.1 467 sdpveterkirgslvvLCTIAMLSNP--------AiddsgvfrfvpmERLLVDEASQIDT 518
                    22222222222222222222222222........12334444566667777777777776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.022      94     154 ..     347     405 ..     318     415 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
       T2SSE  94 viR.kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkein 154
                 +iR  + +  l+  d+  ++++++ +a ++r+   e+ l++v G+ g+GKtt++ a+l   +
  CDO72676.1 347 AIRpPSVPLGLEHTDFKLNGSQAQVVA-AMRSL--EEPLVIVHGPPGTGKTTTIAAALYLWE 405
                 666555556667777777777665554.55555..678****************99997655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.2e-05     0.058       1      17 [.     382     398 ..     382     473 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 lv+++G+pG+GK+t + 
  CDO72676.1 382 LVIVHGPPGTGKTTTIA 398
                 89***********9875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11   1.2e+02      79     103 ..     224     248 ..     213     285 .. 0.74
   2 ?    8.6   0.0    0.0011       1.3       4      34 ..     383     413 ..     380     418 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
                 HHHTTSSEEEEEE--SSTTHHHHHH CS
       SRP54  79 akeekidvvlvDTaGrlqndkelme 103
                 + ++++d v +DT Grl++ ++ ++
  CDO72676.1 224 QMNNEFDGVEIDTDGRLAIRNSRFN 248
                 456789***********99988776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0011
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEE CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvll 34 
                 +++ G+ G+GKTtt+a    l ++e   v +
  CDO72676.1 383 VIVHGPPGTGKTTTIAAALYLWEQEYSPVWV 413
                 6789***********9755444444444444 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0035       3.9       7      33 ..     373     400 ..     367     414 .. 0.76
   2 ?    3.7   0.0     0.033        37     259     294 ..     507     542 ..     453     543 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
                    HHHHS-SSEEEEEE-.TTSSHHHHHHHH CS
  UvrD-helicase   7 eaiaslggpilveAs.AGsGKTfvlaer 33 
                    +a++sl++p++++ + +G+GKT+++a+ 
     CDO72676.1 373 AAMRSLEEPLVIVHGpPGTGKTTTIAAA 400
                    67788888887766637********874 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.033
                    EEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 259 eiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                     +l+DE+ + +   +  l   +++ ++++m GDpkQ
     CDO72676.1 507 RLLVDEASQIDTFEFMHLFHKFRDLQKICMFGDPKQ 542
                    579999999998887766667777789********* PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.14       3     118 ..     363     493 ..     361     529 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH....HHHHHHH...HHGGGGTGG.............. CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk....slleqtl...eefkkflseayke.......... 84 
                 +l+  Q++++ +++ +l   ++  ++++ + GtGKT ++a++ +   ++++   + ++++++    ++   ++    +fk + s+++            
  CDO72676.1 363 KLNGSQAQVVAAMR-SL---EEPLVIVHGPPGTGKTTTIAAALYLWEQEYS--PVWVIAQSNvgvkNIARTLIkrgIDFKLIVSKEFYVewhehlyeel 455
                 56666777777775.33...355677899*********9998888777655..8999988874333333222244445566555555445544444444 PP

                 GEEEESSS-B--...........-SEEEEEHHHHHHTH CS
      ResIII  85 igkkvsgdkkka....kekdstnkkilvttiqsldads 118
                 ++  +++d+ ++    +e+++  + +++ ti +l+++ 
  CDO72676.1 456 EERLIRSDELISdpveTERKIRGSLVVLCTIAMLSNPA 493
                 34445555555577766677777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4466.85
//
Query:       CDO72677.1  [L=467]
Description: hypothetical protein BN946_scf184985.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.02   15.8   1.0      0.028   15.3   0.0    1.7  2  EphA2_TM      Ephrin type-A receptor 2 transmembrane domain
      0.054   14.2   0.3       0.34   11.7   0.0    2.5  2  Cadherin_C_2  Cadherin cytoplasmic C-terminal
      0.054   13.4   0.0      0.054   13.4   0.0    2.9  3  TMEM154       TMEM154 protein family
      0.065   12.7   0.0       0.11   12.0   0.0    1.4  1  Rax2          Cortical protein marker for cell polarity
      0.067   13.1   0.0       0.14   12.1   0.0    1.5  1  LRRC37AB_C    LRRC37A/B like protein 1 C-terminal domain
       0.27   11.5   0.0       0.27   11.5   0.0    2.5  4  MLANA         Protein melan-A
        2.5    7.9   5.5        4.7    7.1   5.5    1.4  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.1e-05     0.028       2      58 ..     176     238 ..     174     243 .. 0.49
   2 ?   -3.7   0.2         7   1.8e+04      39      42 ..     383     386 ..     365     399 .. 0.41

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
    EphA2_TM   2 iaaavaglvllvilvilvlvlvrrrsknrkqksdl....k.skeekkeeensgkk.glktYvD 58 
                 ++ a+++l++l i++ l+lv+ rrr++++ + s+     + +++++++  + + + ++++ +D
  CDO72677.1 176 AVCAALALIVLTIIIGLILVCKRRRRYRHLRASSAglsgSmKNYQDGDGATDNDEaTHRSHID 238
                 455666666666666666666655555554444445444142222222222222235777776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7
    EphA2_TM  39 keek 42 
                 +e +
  CDO72677.1 383 AERQ 386
                 1222 PP

>> Cadherin_C_2  Cadherin cytoplasmic C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.4   3.6e+03      41      80 ..      44      86 ..      26      89 .. 0.61
   2 ?   11.7   0.0   0.00013      0.34       6      41 ..     173     222 ..     171     277 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
  Cadherin_C_2 41 kk.s.lvskpalkvpph..vsgngtlsqsysYevcltpesgksd 80
                  ++ s  + +p++++p +  v    + +    ++v l+++s++++
    CDO72677.1 44 SQtSsSADQPTAPAPRSttVVIF-STTSAVAHDVGLSSDSETTT 86
                  44344555566666655432222.33357789999999998765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00013
  Cadherin_C_2   6 LviaLasvSflFLltvivlvavrlrkerksaalqk..............k 41 
                   Lvia+++   l +lt+i+ +++ ++++r+ ++l++               
    CDO72677.1 173 LVIAVCAALALIVLTIIIGLILVCKRRRRYRHLRAssaglsgsmknyqdG 222
                   9******9999999999999*********999999444444444444430 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   3.2       2.2   5.6e+03      14      16 ..      47      49 ..      10      98 .. 0.53
   2 ?   13.4   0.0   2.1e-05     0.054      17      88 ..     113     202 ..      95     225 .. 0.61
   3 ?   -2.2   1.0       1.3   3.4e+03      15      41 ..     354     377 ..     330     395 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.2
     TMEM154 14 tat 16
                +  
  CDO72677.1 47 SSS 49
                111 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.1e-05
     TMEM154  17 leeesadatsaasteseslk..................qeeakeslssaelsnesdqlelvlmiiiPlvllillllv.viiliqkkkrkrs 88 
                 l + s+++t++ +t s+s k                  + +a + ++s+  s+ s   + +++ +  + +li+l ++ ++il+  k+r+r 
  CDO72677.1 113 LAPDSSHSTTTIVTSSDSPKpslslssfsvpstlghssGYTAPARTPSTLPSPGSHAPSKLVIAVCAALALIVLTIIiGLILV-CKRRRRY 202
                 45555555555555444444344455555555555666667777888887777777777666666666666666554045555.4455554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
     TMEM154  15 atleeesadatsaasteseslk.qeeak 41 
                   ++ +s++a+ +a+ +    +  +e++
  CDO72677.1 354 SETTAVSSPASHVAVNQ----HhDDEKN 377
                 22222333333222221....1112222 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.2e-05      0.11     167     198 ..     174     205 ..      81     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.2e-05
        Rax2 167 lIgLAlALgtvallgllgiilayirkkregye 198
                  I+ + AL++++l  ++g+il + r++r  + 
  CDO72677.1 174 VIAVCAALALIVLTIIIGLILVCKRRRRYRHL 205
                 3889*****************88888876655 PP

>> LRRC37AB_C  LRRC37A/B like protein 1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.3e-05      0.14     113     145 ..     170     202 ..     154     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.3e-05
  LRRC37AB_C 113 nnklilaisvtvvvmiliiilcLieicshrras 145
                  +kl++a+  + ++++l+ii++Li +c +rr+ 
  CDO72677.1 170 PSKLVIAVCAALALIVLTIIIGLILVCKRRRRY 202
                 579*************************99875 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.27      23      77 ..     178     228 ..     165     253 .. 0.58
   2 ?   -3.3   0.8       4.1     1e+04     108     117 .]     309     318 ..     307     318 .. 0.85
   3 ?   -3.1   0.1       3.7   9.6e+03      78     101 ..     379     402 ..     353     403 .. 0.43
   4 ?   -3.4   1.4       4.6   1.2e+04     110     117 .]     449     456 ..     446     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
       MLANA  23 eeaaGigllvvvLaillllgCwyykrrsGYkslrskslkvs.tlktlvgegeleel 77 
                   a+ + +l+++++++l      +krr+ Y++lr +s+  s ++k+ +  +  ++ 
  CDO72677.1 178 CAALALIVLTIIIGLIL-----VCKRRRRYRHLRASSAGLSgSMKNYQDGDGATDN 228
                 34444444444444433.....47**********9988754144444433333333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.1
       MLANA 108 aeqsPPPYsP 117
                 a +sPPP sP
  CDO72677.1 309 ARRSPPPTSP 318
                 5689***998 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.7
       MLANA  78 akadsklalqefknfesvvpdapP 101
                 +++ ++ + +++++ +   pd pP
  CDO72677.1 379 SSQTAERQGRSQHSQDHPYPDGPP 402
                 222222222233334444566666 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4.6
       MLANA 110 qsPPPYsP 117
                   PPPY P
  CDO72677.1 449 DEPPPYHP 456
                 67****88 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.5    0.0018       4.7       9      36 ..     174     204 ..     171     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
  Adeno_E3_CR2   9 ivaVvvGlaiIiicml...yYaCcYrkhraq 36 
                   + aV + la+I+++++   + +C +r+ +++
    CDO72677.1 174 VIAVCAALALIVLTIIiglILVCKRRRRYRH 204
                   5667777777777665222579999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3305.24
//
Query:       CDO72678.1  [L=427]
Description: hypothetical protein BN946_scf184985.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3499.58
//
Query:       CDO72679.1  [L=107]
Description: hypothetical protein BN946_scf184985.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 768.25
//
Query:       CDO72680.1  [L=348]
Description: hypothetical protein BN946_scf184985.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-12   47.4  22.6    1.8e-12   47.4  22.6    4.1  3  Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.24   11.3   0.0    1.3  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
        7.2    6.6  17.3        1.1    9.3   2.2    2.4  2  DUF1640         Protein of unknown function (DUF1640)


Domain annotation for each model (and alignments):
>> Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4  22.6   3.1e-16   1.8e-12       2     128 ..      50     193 ..      49     195 .. 0.81
   2 ?   -2.3   9.8      0.73   4.3e+03      47      93 ..     191     237 ..     189     266 .. 0.69
   3 ?    0.8   3.4     0.077   4.6e+02      37      71 ..     305     327 ..     281     336 .. 0.47

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 3.1e-16
  Pinin_SDK_memA   2 eekkRnrRlfgaLlgtLqkfkkeeekqk..ekeerraeiekrleekakeekeeleerkrekreeleeerraeqkelraleeklelkelmetwhen 94 
                     +e+kR++ +fg  lgtL+k+k+e++++   e+ ++r+ ie+rl++k+++e+++ ++  + k+ + +++r++e+ +l     ++     ++ + + 
      CDO72680.1  50 RERKRGKTMFGLVLGTLTKAKNEDKERNasEAARKRQLIEQRLQDKLRKETDSVRRAMEAKKDKTTANRKEEELQL---KDSI-----HKLRRTR 136
                     69********************99887799999*********************8888888999999999999999...5555.....6666666 PP

  Pinin_SDK_memA  95 kkalanf.................lrTkte..........PpiyYlPwkltekteelleeq 128
                     +  l+nf                      +          PpiyYlP+kl +++e+ l++ 
      CDO72680.1 137 LPLLSNFlltsdvipsvdsesptsT----NplappprtrpPPIYYLPAKLLPAQEAFLKKR 193
                     6777777666666777777755440....34455555556****************99976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.73
  Pinin_SDK_memA  47 keekeeleerkrekreeleeerraeqkelraleeklelkelmetwhe 93 
                     k++k+e +e ++++ e+ ++er a  +e+++l ++++++e++++ ++
      CDO72680.1 191 KKRKAEVKEAAEKEWEAFKAERAAGVEEINQLRQRVAEEENRHKTER 237
                     56666776666777777777888888888777666644333322222 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.077
  Pinin_SDK_memA  37 eiekrleekakeekeeleerkrekreeleeerrae 71 
                     e e  +e            r++++ +e +e + +e
      CDO72680.1 305 EKESEQE------------RAAKESAEKTESKVKE 327
                     2222222............2222222222222222 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.24      51     110 ..      38      98 ..      14     115 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
                     SSSSSSSBESS.SEBEEHHHHHHCCCHCCCCEEEESSSS..STSEEECSSEEEES--SHHHHS CS
  RNA_pol_Rpb1_3  51 tvtlrpailkp.kelwtgkqtfsrilpneinyerkneek..dgkvlikngelikGvidkkvvg 110
                     ++++r +  +  +e + gk++f+++l      +++  +k  + +   ++ +li+ ++++k+ +
      CDO72680.1  38 KKRPRIDMAVEpRERKRGKTMFGLVLGTLTKAKNE--DKerNASEAARKRQLIEQRLQDKLRK 98 
                     34556666666699*************53444443..23357899999999999999998765 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   7.4     0.022   1.3e+02     113     154 ..      73     115 ..      62     136 .. 0.44
   2 ?    9.3   2.2   0.00018       1.1      54     104 ..     185     235 ..     180     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.022
     DUF1640 113 eKgrireelakleaki.qelnnkidrevsalrteiEsvKldvi 154
                  K+r   e a+ ++ i q l+ k+ +e  ++r ++E+ K +++
  CDO72680.1  73 DKERNASEAARKRQLIeQRLQDKLRKETDSVRRAMEAKKDKTT 115
                 3444444444444433222344444444444444444433322 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00018
     DUF1640  54 lqkaalselrkevqisersefaalrseteklqreleklkqkLreeidklka 104
                  q+a l++ + ev+  +++e +a+++e+ +  +e+++l+q++ ee ++ k 
  CDO72680.1 185 AQEAFLKKRKAEVKEAAEKEWEAFKAERAAGVEEINQLRQRVAEEENRHKT 235
                 5899999*************************************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2108  (0.117575); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 2226.68
//
Query:       CDO72681.1  [L=264]
Description: hypothetical protein BN946_scf184985.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-36  123.6   0.0    5.9e-36  123.2   0.0    1.2  1  CTK3      CTD kinase subunit gamma CTK3
    2.7e-23   81.9   3.4    5.9e-23   80.8   3.4    1.6  1  CTK3_C    CTD kinase subunit gamma CTK3 C-terminus
  ------ inclusion threshold ------
       0.08   13.8   0.0       0.26   12.1   0.0    1.9  2  CTD_bind  RNA polymerase II-binding domain.


Domain annotation for each model (and alignments):
>> CTK3  CTD kinase subunit gamma CTK3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   9.8e-40   5.9e-36       1     123 []       1     131 [.       1     131 [. 0.95

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 9.8e-40
                 --HHHHHHHHHHHHTT--SSGGGTHHHHHHHHHTGGG.HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHTT--S.......THHHHHHHTHHHH CS
        CTK3   1 mDpFEvrsqFsqlLrkLtasvqslqkaaqfAlknkdk.eedlfscileqlesadlNtranilyfidllleeslkegqseks.....pYveslkrdilkl 93 
                 mDpFEvr+qF++lL++L as+qs++k   fA+k   + +edl++cile++++++lN+r+n+ly++d l+e +l ++  + s     pYv  ++rd+ k+
  CDO72681.1   1 MDPFEVRMQFLALLKRLDASQQSIKKIVGFAMKFGPScGEDLWDCILEECQKGSLNSRINLLYLLDSLCEACLLSKPPPGSsqtisPYVDYVTRDLRKI 99 
                 9*********************************9877***********************************9988776667888************* PP

                 HHHHS-..HHHHHHHHHHHHHHHHHHHTTSS- CS
        CTK3  94 vdsvvP..gsgaaNlksvrkilkslklksllt 123
                 vdsvvP   +g  Nl s+++il+s+++k+l++
  CDO72681.1 100 VDSVVPegRQGLPNLMSTKQILESWRSKRLID 131
                 ******9888999****************986 PP

>> CTK3_C  CTD kinase subunit gamma CTK3 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   3.4   9.8e-27   5.9e-23       2      65 ..     168     252 ..     167     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 9.8e-27
      CTK3_C   2 kkqilkRiEeDRErhKRlrEniWvvprsk..ekslat.......................eaEfenlWeetsdlneddeeealeeleel 65 
                 + +i +R+EeDRErhKRlrE++Wv+p                                  ++Ef+n+We+tsd+nedd+e+ lee e +
  CDO72681.1 168 RDDIKRRMEEDRERHKRLRERRWVQPVALnlP----GampplasfvpltdeddgvresalDIEFDNEWENTSDWNEDDDEAILEENELC 252
                 6799***********************98441....1334566699999************************************9988 PP

>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         3   1.8e+04      45      54 ..      19      28 ..      12      32 .. 0.68
   2 ?   12.1   0.0   4.4e-05      0.26       1      61 [.      58     128 ..      58     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
    CTD_bind 45 kikkklkrll 54
                  ++++k+++
  CDO72681.1 19 ASQQSIKKIV 28
                4567777765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.4e-05
    CTD_bind   1 kLnllYLaNdvlqns........krkqkdefapaFapvlpeafadayk..kapekikkklkrllniWeern 61 
                 ++nllYL+++++  +        +++  + +++   + l +++ +++   ++   + ++ k++l+ W++++
  CDO72681.1  58 RINLLYLLDSLCEACllskpppgSSQTISPYVDYVTRDLRKIVDSVVPegRQGLPNLMSTKQILESWRSKR 128
                 79***********9987666665555589999999998888888888876444448899999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1805.62
//
Query:       CDO72682.1  [L=319]
Description: hypothetical protein BN946_scf184985.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-19   70.3   0.1    2.7e-19   69.8   0.1    1.2  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.1   1.5e-23   2.7e-19       4     139 ..     111     258 ..     108     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 1.5e-23
                    S-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETT.....SHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEE CS
  Flavin_Reduct   4 vaqpvavvttsvpptsplgatlssftslsldPplvafslrlp.....sstadalkeagefvinllsesqealadafsqksgprtddksifagltwe 94 
                    v++p+a v++  +++  + a++s+f +++++Ppl+++s++ +     ++ta ++k+++ f++n++se   + a+ +s +++  +++++ ++glt e
     CDO72682.1 111 VPRPIAFVSSVSEQGVENLAPFSWFNQVTHNPPLISVSCAANaegglKDTAGNIKATKGFTVNIISEPFVENANYTSLDAP-ADVSEWPLSGLTKE 205
                    89********777888889*********************7777777*******************************998.************** PP

                    CT.CCCSEEETTCSEEEEEEEEEEECCTT.......EEEEEEEEEEEEESTTE CS
  Flavin_Reduct  95 es.ptgapallgalasleCqvvgsvelgd.......helfigeVvavkvgdda 139
                    +s  ++a +++++ +s+eC++ + v++          +l++g V  ++v+ d 
     CDO72682.1 206 PSlHVKAARVKESAFSMECELFQAVDIIHpstkkhtATLILGLVKCIHVRRDV 258
                    ***********************866543455555689999999999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2225.28
//
Query:       CDO72683.1  [L=373]
Description: hypothetical protein BN946_scf184985.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-23   83.7   0.0    2.1e-23   82.8   0.0    1.5  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
    2.6e-19   68.4   0.0    3.8e-19   67.9   0.0    1.3  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   2.3e-27   2.1e-23       3     112 .]     100     222 ..      98     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 2.3e-27
                    EEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSEC.........EEGGGCBES.SSSCEES......... CS
  RNA_pol_A_bac   3 ieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpge.........vtagdlkle.dadveiv......... 79 
                    + +ntsv++DEv+a+rlglipl+ +++l+ +    ++        ++++++++L+v++++          vt++dl ++ + + e v         
     CDO72683.1 100 VWNNTSVIHDEVLAQRLGLIPLNVDPALFEFRLPGDI------PYDRNTLVFQLEVECSRGkkgeiineyVTSRDLRWVpQGEQEAVfgdlvpaat 189
                    569**************************66666666......6788889*********9999***************953344445788888888 PP

                    STTSEEEEEETT-EEEEEEEEEEESSEECTTT- CS
  RNA_pol_A_bac  80 npdilIakLrkgqeleleakvkkGiGkehakfs 112
                    n+di+IakLr+gq +++e+++ kG+Gkehak+s
     CDO72683.1 190 NKDIVIAKLRPGQVVHMELHAIKGVGKEHAKWS 222
                    ********************************8 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   4.2e-23   3.8e-19       1      68 [.      68     334 ..      68     335 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 4.2e-23
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea..................................................................... 30 
                 ef+l gvd++++Na+Rril++evp++aie                                                                      
  CDO72683.1  68 EFDLVGVDASIANAFRRILIAEVPTIAIEDvfvwnntsvihdevlaqrlgliplnvdpalfefrlpgdipydrntlvfqlevecsrgkkgeiineyvts 166
                 79*******************************************************999999999999999999999999999999999999999999 PP

                 ...........................................................................xx...................... RF
   RNA_pol_L  31 ...........................................................................pv...................... 32 
                                                                                            pv                      
  CDO72683.1 167 rdlrwvpqgeqeavfgdlvpaatnkdiviaklrpgqvvhmelhaikgvgkehakwspvatatyrlhplvllnpskPVpphlaqkfascfspgvvqvsad 265
                 999999999999999999988888888888888888888888888888888777776666666666555555555227777777777777777777888 PP

                 .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  33 .................................vkvntdkdklilevetdgslkPeealkeAlkiLkek 68 
                                                  v++++ +d +i+++e+ g ++Pe ++ eA+k+++ k
  CDO72683.1 266 gkvgslcvsiderhlrketmsrevlrhkefegcVELKRIRDWFIFSIESEGPYTPEALFPEAIKVMRGK 334
                 8888888888888888888888888888888889999****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2655.81
//
Query:       CDO72684.1  [L=780]
Description: hypothetical protein BN946_scf184985.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-26   91.9   0.1      1e-25   90.6   0.1    1.7  1  AAA_12           AAA domain
    5.5e-19   68.6   0.0    6.5e-18   65.1   0.0    2.4  2  AAA_30           AAA domain
    1.3e-17   64.5   0.0    1.2e-07   31.8   0.0    2.4  2  AAA_11           AAA domain
    4.2e-13   49.9   0.0    1.6e-12   47.9   0.0    2.0  1  AAA_19           AAA domain
    8.1e-05   22.5   0.3        1.2    8.9   0.2    3.2  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00018   21.1   0.0      0.025   14.0   0.0    2.4  2  PhoH             PhoH-like protein
    0.00032   21.1   0.0    0.00079   19.8   0.0    1.7  1  AAA_16           AAA ATPase domain
    0.00044   20.5   0.0      0.039   14.2   0.0    2.8  2  AAA_22           AAA domain
     0.0016   17.6   0.0      0.025   13.6   0.0    2.3  2  T2SSE            Type II/IV secretion system protein
     0.0026   18.2   0.0     0.0062   17.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
     0.0031   16.8   0.0          2    7.6   0.0    2.9  3  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0042   16.9   0.1       0.01   15.7   0.1    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0099   15.7   0.0       0.44   10.4   0.0    2.9  2  Helicase_RecD    Helicase
  ------ inclusion threshold ------
      0.021   15.0   0.1       0.09   12.9   0.0    2.1  2  AAA_33           AAA domain
      0.027   14.4   0.0        2.8    7.8   0.0    2.4  2  NACHT            NACHT domain
      0.049   13.4   0.1        2.7    7.7   0.0    2.4  2  DEAD             DEAD/DEAH box helicase
      0.062   13.3   0.0       0.13   12.3   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
      0.094   12.6   0.0        3.3    7.6   0.0    2.4  2  NTPase_1         NTPase
       0.12   11.9   0.0       0.24   10.9   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
       0.12   12.0   0.0       0.25   11.1   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
       0.17   11.1   0.0       0.31   10.2   0.0    1.4  1  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.1   1.2e-28     1e-25      14     197 ..     568     726 ..     554     728 .. 0.88

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.2e-28
      AAA_12  14 kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklvekllkkgseeerk 112
                 k +  +LdtqYRm   + +f s  +Yk+kL + ++++ re+               idv k +e + +  +s+ N eEa++vv+lv+++++k       
  CDO72684.1 568 KDRAYFLDTQYRMPVPLGDFISGAVYKSKLASVHDITGRECI------------RAIDVRKGKEDSVD--TSWRNVEEARTVVNLVKHYYQKLD----- 647
                 457899************************998888777655............899***99999998..8*************9999887665..... PP

      AAA_12 113 kigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskliivGn 197
                   ++itpY aq  ++++ lk+++ ++ +   +v  vd++QG+e  ++i+s+VR++   +  fl+  +r+NV lTR ++ +i+v +
  CDO72684.1 648 -FCIITPYDAQRATIRDLLKAANLTAAS--DKVYNVDSYQGHEAPYVIVSAVRTT---TPRFLSLDNRVNVMLTRCQRGMILVTQ 726
                 .56*****************88877755..79**********************5...4569********************976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   7.7e-21   6.5e-18       2     135 ..     367     554 ..     366     580 .. 0.84
   2 ?    0.2   0.0      0.61   5.2e+02      28      46 ..     732     750 ..     723     764 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 7.7e-21
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.....eelg...ieastiakllkrlk........... 81 
                 ln +Q+ +++a++++++ +++++Gp+GtGKtt+++a+ + w+   ++v ++A ++   k++a     +++    i ++  +  ++++            
  CDO72684.1 367 LNRSQRVVATAMIENKEPLVIVHGPPGTGKTTTIAAALDYWQVYLQPVWVIAQSNVGVKNIArsiikRDIKfklIVSKEFHFEWHEHLyagpvedtlir 465
                 899*****************************************9****************94444323332222344444333333377777777777 PP

      AAA_30  82 ....................................grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGg 135
                                                     g+ + +p + l+vDEa+ +dt+++ +l+++ e+   kv + GD++Ql++ ++ +
  CDO72684.1 466 seeffnrdfdpvhrigdvqivlctlamlsnpmlsltGMFKHRPMQHLVVDEASQIDTSEFMHLFDRFED-LRKVCMFGDPKQLPPFGKEH 554
                 778999999999999999999999999999999***88889999************************9.99************987655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.61
      AAA_30  28 GtGKttalkalreaweaag 46 
                 G GK t+l++l++ we+a 
  CDO72684.1 732 GGGKNTLLGKLVKQWEDAD 750
                 89**************985 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.4e-10   1.2e-07       2      76 ..     367     433 ..     366     445 .. 0.90
   2 !   30.3   0.0   4.1e-10   3.5e-07     193     257 ..     480     550 ..     461     554 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.4e-10
      AAA_11   2 lndsqreaiksalsese.itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                 ln+sqr   + +++++e +++++GPPGtgKT+ti++ l +          + + + + v a+SN+ v +++  +++
  CDO72684.1 367 LNRSQRVVATAMIENKEpLVIVHGPPGTGKTTTIAAALDYW---------QVYLQPVWVIAQSNVGVKNIARSIIK 433
                 89****9999999888889**********************.........79999****************99998 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 4.1e-10
      AAA_11 193 ldeaeivltTlsgagsklleklak.....kfdvviIDEAaqavEpstliPl..rlgakkvvLvGDpkQLpat 257
                 + +++ivl+Tl+  +++ l+   +      ++ +++DEA+q    + +  +  ++  +kv + GDpkQLp+ 
  CDO72684.1 480 IGDVQIVLCTLAMLSNPMLSLT-GmfkhrPMQHLVVDEASQIDTSEFMHLFdrFEDLRKVCMFGDPKQLPPF 550
                 6789**********88876644.33557899**********7666665555435666**************7 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   1.9e-15   1.6e-12       6     145 ..     379     551 ..     374     552 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.9e-15
      AAA_19   6 ealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.................................... 68 
                  + ke++++v ++pGtGKT+++ +++ +++       +++ ++a  +  +k+++ ++  ++++                                    
  CDO72684.1 379 IENKEPLVIVHGPPGTGKTTTIAAALDYWQVYL----QPVWVIAQSNVGVKNIARSI--IKRDikfklivskefhfewhehlyagpvedtlirseeffn 471
                 4788999*********************99999....89****************99..4444558888877777777777777777666666666666 PP

      AAA_19  69 ..atTiHrlal.....ldfddlltealelle.......eaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyvf 145
                    + +Hr++               +l++l           +++++   ++l+vDE++++d    ++L+++   +  k++++GDp+Ql++ +
  CDO72684.1 472 rdFDPVHRIGDvqivlC--------TLAMLSnpmlsltGMFKHRPM---QHLVVDEASQIDtSEFMHLFDRFE-DLRKVCMFGDPKQLPPFG 551
                 66555555543444431........222222333323222334444...7***********9999*******9.5555***********976 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0015       1.3       2      20 ..     387     405 ..     386     420 .. 0.89
   2 !    8.9   0.2    0.0014       1.2      63     110 ..     509     557 ..     494     725 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0015
  Viral_helicase1   2 vvhGvpGcGKStlirkllr 20 
                      +vhG pG GK+t i  +l+
       CDO72684.1 387 IVHGPPGTGKTTTIAAALD 405
                      8************988775 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0014
  Viral_helicase1  63 gkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfl 110
                       + l++DE+ + ++ ++     + + ++ v++fGDp+Q p   +++ ++
       CDO72684.1 509 MQHLVVDEASQIDTSEFMHlFDRFEDLRKVCMFGDPKQLPPFGKEHASK 557
                      67899*****99999888745566889***********99876555443 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     3e-05     0.025       5      43 ..     367     406 ..     363     425 .. 0.80
   2 ?    4.4   0.0     0.025        22     123     166 ..     512     556 ..     509     574 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
                 -SHHHHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHH CS
        PhoH   5 ktkeQkeylealk..kndivfaiGpaGtGKtylavalavea 43 
                  +++Q+ +++a+   k+ +v++ Gp GtGKt  ++a+a+++
  CDO72684.1 367 LNRSQRVVATAMIenKEPLVIVHGPPGTGKTT-TIAAALDY 406
                 688999999988845555************96.56666665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.025
                 EEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------.----- CS
        PhoH 123 vilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp.kgkks 166
                 +++DEA  + +++   +  R+    kv + Gd++q     k++ s
  CDO72684.1 512 LVVDEASQIDTSEFMHLFDRFEDLRKVCMFGDPKQLPPFgKEHAS 556
                 699********************************8776444555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.2e-07   0.00079      21      74 ..     380     434 ..     366     532 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.2e-07
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysalaq 74 
                 ++ ++lv+++G++G+GK++ + ++l++++     ++++++ ++   ++i++s++ +
  CDO72684.1 380 ENKEPLVIVHGPPGTGKTTTIAAALDYWQVYlqPVWVIAQSNVGV-KNIARSIIKR 434
                 44559****************999985442221244454444444.4444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.6e-05     0.039       5      25 ..     383     403 ..     379     415 .. 0.85
   2 ?    3.0   0.0      0.13   1.1e+02      86     113 ..     504     536 ..     493     549 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.6e-05
      AAA_22   5 agilvvtGesGtGKTtllrrl 25 
                 + +++v+G++GtGKTt+++  
  CDO72684.1 383 EPLVIVHGPPGTGKTTTIAAA 403
                 66899***********99865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
      AAA_22  86 lraravielliiDEaqhlr.s.....eealeeLr 113
                 +++r + + l++DEa  ++ s      + +e+Lr
  CDO72684.1 504 FKHRPM-QHLVVDEASQIDtSefmhlFDRFEDLR 536
                 567788.9**********7534544445555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     3e-05     0.025      98     152 ..     348     406 ..     301     417 .. 0.71
   2 ?    1.3   0.0      0.17   1.5e+02     116     156 ..     708     749 ..     651     769 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
       T2SSE  98 ksakeltlddlgaeealk..ekiaevlrkavrerg..lilvsGgTgsGKttllyallke 152
                 +s k+++ ++ +++e+++  ++ ++v+++a+ e++  l++v G+ g+GKtt++ a+l +
  CDO72684.1 348 SSGKRVKAKKAAQNEQFSslNRSQRVVATAMIENKepLVIVHGPPGTGKTTTIAAALDY 406
                 555666666666666665445667777777655432389***************99976 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
       T2SSE 116 ekiaevlrkavrerglilvsGgT...gsGKttllyallkeinks 156
                 ++++ +l +   +rg+ilv+  T   g GK tll  l+k+ ++ 
  CDO72684.1 708 NRVNVMLTRC--QRGMILVTQRTfahGGGKNTLLGKLVKQWEDA 749
                 6667777777..9******998888899******9998877665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.2e-06    0.0062       1      25 [.     386     410 ..     386     436 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.2e-06
                 EEEESSTTSSHHHHHHHHHHHHTHE CS
         AAA   1 vllyGppGtGKTllakavakelgve 25 
                 v+++GppGtGKT+++ a    ++v+
  CDO72684.1 386 VIVHGPPGTGKTTTIAAALDYWQVY 410
                 689************9988877654 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0024         2       3      25 ..     385     407 ..     383     447 .. 0.77
   2 ?   -1.1   0.0         1   8.8e+02      85     170 ..     505     580 ..     497     598 .. 0.67
   3 ?    5.4   0.1     0.011       9.4     342     360 ..     706     724 ..     676     726 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
     DUF2075   3 vvlVtGvaGtGKtvvllnllael 25 
                 +v+V+G +GtGKt    ++l  +
  CDO72684.1 385 LVIVHGPPGTGKTTTIAAALDYW 407
                 69***********9887776665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
     DUF2075  85 eepkedvvivDEAhrlltksdqaekqseenqlkelmkrakvvvalvDegQelntgeigteeelkklakkleveleekvhLksqfRv 170
                 ++++++ ++vDEA  + t        se  +l + ++  + v ++ D++Q    g+    +++k++++    +++ +  L++q+R+
  CDO72684.1 505 KHRPMQHLVVDEASQIDT--------SEFMHLFDRFEDLRKVCMFGDPKQLPPFGK-EHASKMKTIFDFPHLKDRAY-FLDTQYRM 580
                 567788899999988888........444556666665445555666666666666.33444666666666665554.77777776 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.011
     DUF2075 342 lkNayrVLLtRGrkGlyiy 360
                 l N+ +V+LtR ++G++++
  CDO72684.1 706 LDNRVNVMLTRCQRGMILV 724
                 78**************997 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.2e-05      0.01       6      52 .]     679     724 ..     677     724 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
    UvrD_C_2   6 tihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklilv 52 
                 ++   QG e+p+Viv ++ ++++r +    + + +++TR+++  ilv
  CDO72684.1 679 NVDSYQGHEAPYVIVSAVRTTTPR-FLSLDNRVNVMLTRCQRGMILV 724
                 68889**********999999988.7779*************99997 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00052      0.44       2     113 ..     388     531 ..     387     540 .. 0.60
   2 ?   -1.4   0.0       2.2   1.8e+03       6      25 ..     731     750 ..     728     764 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00052
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke............................eekkkkaekael 69 
                    + + +G+GK+++++ al  +    +  ++v a s+  vk++ ++++k   + +l                              +           
     CDO72684.1 388 VHGPPGTGKTTTIAAALDYWQVYLQ-PVWVIAQSNVGVKNIARSIIKRDIKFKLIVskefhfewhehlyagpvedtlirseeffN----------- 471
                    67889*********99999888765.9**************99998764443333244577777666666555555444432220........... PP

  Helicase_RecD  70 rvr..............kqrieyiapdellklkeqa..................dllvvDEAAaiplpllkkllek 113
                      r               +++              a                  + lvvDEA++i+++   +l+++
     CDO72684.1 472 --RdfdpvhrigdvqivLCTL--------------AmlsnpmlsltgmfkhrpmQHLVVDEASQIDTSEFMHLFDR 531
                    ..0222222222222222222..............02222222334444455558899999999988777766655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
  Helicase_RecD   6 RGRGKSaalGlalaaliaeg 25 
                     G GK ++lG++++++  ++
     CDO72684.1 731 HGGGKNTLLGKLVKQWEDAD 750
                    699*********99987665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011      0.09       1      17 [.     385     401 ..     385     415 .. 0.89
   2 ?   -3.2   0.0        10   8.5e+03      15      54 ..     638     676 ..     637     698 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 lv+++G+pG+GK+t + 
  CDO72684.1 385 LVIVHGPPGTGKTTTIA 401
                 89************875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 10
      AAA_33  15 laerllkklgavllssdtlrrrlfgtdqqsktdytrvldr 54 
                 l++++++kl++++++  ++ r+   +  +   ++t ++d+
  CDO72684.1 638 LVKHYYQKLDFCIITPYDAQRATIRDLLK-AANLTAASDK 676
                 56788888888888877776644332222.2334444444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0033       2.8       2      24 ..     385     407 ..     384     413 .. 0.84
   2 ?    4.0   0.0     0.049        42      10      31 ..     732     753 ..     730     765 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0033
                 CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklalaw 24 
                 lvi++G++G GKTt ++   + w
  CDO72684.1 385 LVIVHGPPGTGKTTTIAAALDYW 407
                 69************887766666 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.049
                 TTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  10 GsGKTtLlqklalawaegklpq 31 
                 G GK tLl kl+ +w + ++p+
  CDO72684.1 732 GGGKNTLLGKLVKQWEDADDPA 753
                 99*************9998876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.087        74       9      33 ..     376     402 ..     368     423 .. 0.74
   2 ?    7.7   0.0    0.0032       2.7      96     149 ..     481     535 ..     463     547 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.087
                 HHHHTTC..EEEEEESTTSSHHHHHHH CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxx RF
        DEAD   9 plilggg..dvlvaaeTGsGKTlafli 33 
                  ++++++   v+v+++ G+GKT+  + 
  CDO72684.1 376 TAMIENKepLVIVHGPPGTGKTTTIAA 402
                 444544323699**********97654 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0032
                 TTCSEEEEEHHHHHH.HH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrldd.ll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                  +v+iv+ t  +l + +l  tg ++ + ++ lV+DEa ++  ++f    +r ++ l
  CDO72684.1 481 GDVQIVLCTLAMLSNpMLsLTGMFKHRPMQHLVVDEASQIDTSEFMHLFDR-FEDL 535
                 459************7775699999***************99999887777.5555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.13      19     141 ..     379     517 ..     354     541 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                 ....TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH.......HHGGGGTGG.....................GEEEESSS- CS
      ResIII  19 lkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl.......eefkkflseayke.................igkkvsgdk 93 
                 ++ +++  ++++ + GtGKT ++a++ ++ +   + + + ++++++  ++           +fk + s+++++                  +++++ d 
  CDO72684.1 379 IE-NKEPLVIVHGPPGTGKTTTIAAALDYWQV--YLQPVWVIAQSNVGVKNIArsiikrdIKFKLIVSKEFHFewhehlyagpvedtlirSEEFFNRDF 474
                 22.6666777899********99877665544..34589999988843333333444655567888888887788666665655444443333444444 PP

                 B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETG CS
      ResIII  94 kkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEa 141
                 +    +++ + +i++ t  +l++++    + +  +++   + +++DEa
  CDO72684.1 475 D--PVHRIGDVQIVLCTLAMLSNPM---LSLTGMFKHRPMQHLVVDEA 517
                 4..4599999999999999999999...55666666666668888887 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0038       3.3       2      21 ..     386     405 ..     385     414 .. 0.87
   2 ?    2.2   0.0      0.18   1.5e+02       8      44 ..     731     767 ..     723     769 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0038
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 v++ GppG+GKtT +  +l+
  CDO72684.1 386 VIVHGPPGTGKTTTIAAALD 405
                 7899*********9988776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
                 TTSSHHHHHHHHHHHH...GGGEEEEEEEEE------ CS
    NTPase_1   8 pGvGKtTlvkkvlellkssgvkvgGfyteevreggrr 44 
                  G GK Tl+ k++++ ++ + + +G+++  +   +rr
  CDO72684.1 731 HGGGKNTLLGKLVKQWEDADDPAEGLWVDAMEVADRR 767
                 699***********************99998877777 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.24      23      55 ..     372     405 ..     367     434 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
       AAA_7  23 syllelllknkkpvl.lvGptGtGKtviikdllk 55 
                 +++ + +++nk p++ + Gp GtGKt++i   l+
  CDO72684.1 372 RVVATAMIENKEPLViVHGPPGTGKTTTIAAALD 405
                 566778899999865156**********998665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.25      34      68 ..     369     405 ..     347     413 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
   IstB_IS21  34 kvkeLatlsfiekkenivll.GpsGvGKs.hlaialg 68 
                 + +++++++ ie+ke +v++ Gp+G+GK+  +a+al 
  CDO72684.1 369 RSQRVVATAMIENKEPLVIVhGPPGTGKTtTIAAALD 405
                 445677788999999876544*******725788875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036      0.31      12      74 ..     378     433 ..     368     453 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
                 HHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHH CS
      NB-ARC  12 LlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilk 74 
                 + e++e+   +v ++G +G GKtt ++ +l       + +   +wv    ++  ++i ++i+k
  CDO72684.1 378 MIENKEP---LVIVHGPPGTGKTTTIAAALDY----WQVYLQPVWVIAQSNVGVKNIARSIIK 433
                 4444444...599***********99999887....456778888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.85u 0.38s 00:00:01.23 Elapsed: 00:00:00.59
# Mc/sec: 4006.29
//
Query:       CDO72685.1  [L=512]
Description: hypothetical protein BN946_scf184985.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-45  154.0   2.3    1.9e-44  152.2   2.3    1.9  1  Peptidase_S28  Serine carboxypeptidase S28
     0.0018   17.8   0.4     0.0035   16.9   0.4    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.12   11.7   0.1       0.18   11.0   0.1    1.3  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   2.3   3.1e-48   1.9e-44       2     431 ..      66     494 ..      65     497 .. 0.74

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 3.1e-48
  Peptidase_S28   2 klDhFdasnkrtfqqryfvndqfyknggpiflyiGgegslsaswvsngeilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsseqaLaDla 97 
                     +Dh ++    tf qry+++ +fy+ g + +l          ++  ng   +lA+e++++ + lEHRf+G+S P++dls+++l +l+++qa+ Dla
     CDO72685.1  66 LIDHNNP-SLGTFRQRYWHTYEFYEPGYTSYLT---------NSTING---RLAQELNGATVVLEHRFFGNSNPYQDLSVKSLAVLTVQQAIDDLA 148
                    5666444.4579**************9998883.........445566...79******************************************* PP

  Peptidase_S28  98 sfikalkqkfklss.....sskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvagecakaveqgfaeveellk 188
                    +f + ++  + + +     +++wi+ GgSY+g+L+ +a +  P + +++ aSSa ++a vdf+ y+e + + +     +c + ve  +a+v+++++
     CDO72685.1 149 YFAQNVHLPMPGGDqlapgNAAWILLGGSYGGALVSYAMANKPGIFYAGYASSAVVQAIVDFWGYFEPIRQAM---PANCSADVEAVIAHVDSVIA 241
                    *****99777665423333789*********************************************998765...567***************** PP

  Peptidase_S28 189 tkegrq..alkeelqlcskldektdkdvakffsniasefqgvvqysydgkanaalsaisikelCklllna...sktdli.lrvevliqlfkslnqk 278
                    +++ +q  alk+ + l+  ++++   d+a   ++++++f +  + + d       ++ +  e C+ l+ +    + +++   +++l+ + ++ + +
     CDO72685.1 242 SGDSTQidALKSTFGLQGLAHND---DFA---AALQQNFFAWQDLQPDSG-----PGGDFYEFCDALEVKngvNAGPSGwGLTNALQAWGNYWKAT 326
                    *9987733446666666555553...544...467777777766644444.....67899999999984422222233303456666666777777 PP

  Peptidase_S28 279 slnlstadisyqlanaekkd.ssles....laddrqWlyqtCtEfgfyqttds.eaqlfgskvpvelyi.dlCedvFgasynskkvsqavkatnsk 367
                     ++  + d + ++    ++  + +       +++r W++  C+Efgfy  +   +  +  s+v    y  ++C   F  +   +++++avk+ n  
     CDO72685.1 327 YYQQICGDDDVETCLGTYDAtNPYWTytyiDNAQRSWQWMLCNEFGFYFDGAPsSLPTVTSRVVTPAYGeRQCGYRFPGAFPGNTTASAVKVPNAS 422
                    666666666555554433330322223443567**************987655256666666666666549**98886555555555555554443 PP

  Peptidase_S28 368 .....YGgadnpkatnvvfvnGalDPWhalglkk....stdssvvpllikgaahcaDmypasssdsaelkaar 431
                         Y g  +  +++ +f nG  DPW+   +      + +s   p li+++ hc+Dm   + + sa++k ++
     CDO72685.1 423 gvngaYQG-WETTTQRLIFANGINDPWREATVAAdgspNAGSDSQPHLISDGFHCSDMLVREGAASAKVKSVQ 494
                    33334999.9999**************9988544111145678899************999988888887765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   5.8e-07    0.0035      67     102 ..     172     207 ..     161     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.8e-07
                   EEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CC CS
  Peptidase_S9  67 aitGgSyGGyltgaalnqrpdlFkaavaevpvvdvl 102
                   ++ GgSyGG l+  a++++p +F a+ a+ +vv  +
    CDO72685.1 172 ILLGGSYGGALVSYAMANKPGIFYAGYASSAVVQAI 207
                   568***************************999865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.1e-05      0.18      33     109 ..     112     202 ..     101     246 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.1e-05
  Hydrolase_4  33 avyalDhrGhGrse......gkrghvpsfddyvdDlaafvekvkeehpel........plfllGhSmGGliallyllrypdkvaglilsaP 109
                  a++ l hr +G+s        k   v  +++ +dDla f ++v  + p+           +llG S GG+++  +++++p  + +   s++
   CDO72685.1 112 ATVVLEHRFFGNSNpyqdlsVKSLAVLTVQQAIDDLAYFAQNVHLPMPGGdqlapgnaAWILLGGSYGGALVSYAMANKPGIFYAGYASSA 202
                  56677888888888888888888889999**************98888777788888899****************999995554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.57
# Mc/sec: 2708.69
//
Query:       CDO72686.1  [L=315]
Description: hypothetical protein BN946_scf184985.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-06   27.7  10.7    4.4e-06   26.7  10.7    1.5  1  CFEM        CFEM domain


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7  10.7   2.4e-10   4.4e-06       5      66 .]      75     136 ..      72     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.4e-10
                 S-GGGTCGGG---TTSS..S-.TT-HHHHHH-HHHHHHHHHHHHHH--THHHHHHHHHHHHHHH CS
        CFEM   5 lPkCaqdClaeavkkss.gCa.kddtaCiCtnaklqseitdCvtaaCtaeealaavnaasslCa 66 
                 +P+Ca+ C+ +a   ++ gC+   +++C C+++++  +  +C+ ++Ct  +++  ++a +++C+
  CDO72686.1  75 IPNCAALCASQAS--NTvGCGqGINVECACHSPTFLPDTVNCMDKNCTSIDEQLGLQALQDACK 136
                 9**********99..5668**899************************8888889999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 1935.17
//
Query:       CDO72687.1  [L=115]
Description: hypothetical protein BN946_scf184985.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-25   88.1   0.0    6.4e-25   87.9   0.0    1.0  1  Dus       Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   3.6e-29   6.4e-25       5     109 ..       1     105 [.       1     112 [. 0.88

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 3.6e-29
                 -TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT..SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEGG CS
         Dus   5 magvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee..tplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaGa 101
                 m++++dlpfR lvr++++  Lv+t+m+  + +++++++     + +++    p++vQl+g+dp++++ aA+ v+d  ad+IdlN+GCP++ + +g++G 
  CDO72687.1   1 MVNQSDLPFRILVRRYNTS-LVYTQMLLPERLLNDREYLEFHRKGLRDGpdAPVVVQLCGNDPETVVRAARQVVD-RADAIDLNLGCPQEAAREGHYGG 97 
                 899****************.*********99999987654433333333358***********************.*********************** PP

                 GGGGSHHH CS
         Dus 102 aLlrkpdl 109
                  Ll k+d 
  CDO72687.1  98 YLLDKKDW 105
                 ***99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 852.75
//
Query:       CDO72688.1  [L=141]
Description: hypothetical protein BN946_scf184985.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1034.38
//
Query:       CDO72689.1  [L=353]
Description: hypothetical protein BN946_scf184985.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-114  383.2   1.0   1.3e-114  383.1   1.0    1.0  1  G-alpha    G-protein alpha subunit
    6.1e-14   51.8   0.2      3e-08   33.3   0.0    2.5  2  Arf        ADP-ribosylation factor family
    0.00012   21.5   0.0       0.52    9.6   0.0    2.3  2  Gtr1_RagA  Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
      0.018   15.2   0.0       0.42   10.8   0.0    2.5  2  Roc        Ras of Complex, Roc, domain of DAPkinase
        0.1   12.4   0.0       0.21   11.3   0.0    1.5  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.1   1.0  3.7e-118  1.3e-114       2     354 .]      14     342 ..      13     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 383.1 bits;  conditional E-value: 3.7e-118
                 XXXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCC CS
     G-alpha   2 rtssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldp 100
                 ++s++idk++++++++ kk  e+k+lllG++eSGKsTi+kq+k+++++gf++ee+ ++r  i++n+++s+++i+ a+++l+ ++     ++++++r ++
  CDO72689.1  14 QRSHEIDKQIEEDSRKLKK--ECKILLLGSGESGKSTIVKQMKIIHQNGFTTEERMQYRTTIYKNLLDSAHHIILAMRKLGMDC----ADPANRARTEK 106
                 789****************..***************************************************************....9********** PP

                 CS-HCHHHH..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEECT CS
     G-alpha 101 lkkveasliaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfevd 199
                 +++++ s +          ++ +f++  e++++i +Lw+dp+i  +++++++++l+d+a yF+ +  ri +p+Y+pt+ Dil+ar  + Gi+et+f ++
  CDO72689.1 107 ILDYNVSPA----------STFYFSE--EMARAIYDLWKDPIIPTVMDHSSEFYLMDSASYFFTEALRIGTPNYIPTETDILRARATSRGITETRFLLG 193
                 ******986..........7999999..********************************************************************999 PP

                 -TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS-GGGCCTT- CS
     G-alpha 200 sklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkgklskyfpsy 298
                   l+++++dvgGqrserkkW+++f++v+ iiF+++lse+dqvl ed+++ r++esl lF++++n++++ +t+iiLf+nK+D++++Kl k++l++yfp+y
  CDO72689.1 194 -PLSIHMFDVGGQRSERKKWIHCFESVTSIIFCTALSEYDQVLLEDRNQKRMQESLILFESVINSRWFLRTSIILFMNKIDVFKSKLPKVPLERYFPEY 291
                 .************************************************************************************************** PP

                 -H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHHHH CS
     G-alpha 299 egrkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrdti 354
                 +g + d+++++ky+ ++F++ ++     + ++y+h+t+atdt++++ v+++v++ti
  CDO72689.1 292 TG-GPDINKAAKYILWRFMQANR----AKLSVYPHLTQATDTTNIRLVFAAVKETI 342
                 *9.9*****************76....4569**********************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.8e-06    0.0064       9      37 ..      28      56 ..      21      79 .. 0.80
   2 !   33.3   0.0   8.4e-12     3e-08      57     130 ..     194     277 ..     178     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
                TT.TTEEEEEEEESTTSSHHHHHHHHHHS CS
         Arf  9 klkkkelrilllGLDnaGKtTilkklkle 37
                ++ kke++illlG  ++GK+Ti+k++k  
  CDO72689.1 28 RKLKKECKILLLGSGESGKSTIVKQMKII 56
                45599*******************99865 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 8.4e-12
                 TEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT..........-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTS CS
         Arf  57 nlkftvwDvGGqeklRplWknYfektdavifvvDsa..........dreRleeakeeLkalleeeelkevallvlaNKqDlpea 130
                  l+++++DvGGq++ R+ W + fe+++++if+   +          +++R++e+   ++++++++   +  ++++ NK+D+ ++
  CDO72689.1 194 PLSIHMFDVGGQRSERKKWIHCFESVTSIIFCTALSeydqvlledrNQKRMQESLILFESVINSRWFLRTSIILFMNKIDVFKS 277
                 5789***************************96443111112221146799999999***********************9765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00015      0.52       1      34 [.      35      72 ..      35     105 .. 0.72
   2 !    9.6   0.0   0.00015      0.54      22     126 ..     167     277 ..     165     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00015
   Gtr1_RagA  1 kvLLmGksgsGKtsm...rsiiFdnylardt.lrlgat 34
                k+LL+G ++sGK+++    +ii++n   ++  ++  +t
  CDO72689.1 35 KILLLGSGESGKSTIvkqMKIIHQNGFTTEErMQYRTT 72
                89************943336999886655440444444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
   Gtr1_RagA  22 nylardt..lrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve...........sreleedletlkeilealrq 107
                 ny++++t  lr  at++   ++  +lg l ++++D+gGq++  ++       + f++v ++i+    +           ++ ++e+l  ++++++   +
  CDO72689.1 167 NYIPTETdiLRARATSRGITETRFLLGPLSIHMFDVGGQRSERKKW-----IHCFESVTSIIFCTALSeydqvlledrnQKRMQESLILFESVINS--R 258
                 66666551155667777666666689*************9987775.....789********9988887777777655334477777777777664..3 PP

   Gtr1_RagA 108 yspeakvfvlihKmDliqe 126
                    + ++  +++K+D  ++
  CDO72689.1 259 WFLRTSIILFMNKIDVFKS 277
                 4445677788888887765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.42       1      20 [.      35      54 ..      35     119 .. 0.79
   2 ?    2.0   0.0     0.066   2.4e+02      57      97 ..     196     246 ..     171     274 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                EEEEESSTTSSHHHHHHCHC CS
         Roc  1 KvvlvGdsgvGKtsllkrfv 20
                K++l+G +++GK++++k++ 
  CDO72689.1 35 KILLLGSGESGKSTIVKQMK 54
                9***************9864 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.066
                 EEEEEEE-SGGCTTT.T-HHHHCTSCEEEEE....EE.....GHHHHCHHH CS
         Roc  57 klniWDtaGqerfrs.lhplylreaalailv....yd.....srssenlke 97 
                 +++++D++Gq   r+   +++ +  +++++     yd     +r++++++e
  CDO72689.1 196 SIHMFDVGGQRSERKkWIHCFESVTSIIFCTalseYDqvlleDRNQKRMQE 246
                 678999999987765366777766666654322222333333333334444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.9e-05      0.21      23      39 ..      33      50 ..      22      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
      AAA_29 23 g.atlltGpsGsGKSTll 39
                +  +ll G  +sGKST++
  CDO72689.1 33 EcKILLLGSGESGKSTIV 50
                3479*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2478.78
//
Query:       CDO72690.1  [L=455]
Description: hypothetical protein BN946_scf184985.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3445.50
//
Query:       CDO72691.1  [L=190]
Description: hypothetical protein BN946_scf184985.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2110  (0.117686); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 1363.77
//
Query:       CDO72692.1  [L=193]
Description: hypothetical protein BN946_scf184985.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.0   0.7       0.17   11.7   0.7    1.6  1  DUF1236   Protein of unknown function (DUF1236)
          1    9.2   6.0        1.2    9.0   6.0    1.2  1  RIFIN     Rifin


Domain annotation for each model (and alignments):
>> DUF1236  Protein of unknown function (DUF1236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   1.9e-05      0.17      22      59 ..      35      73 ..      33      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
     DUF1236 22 alPetVelrpvPdevvi.peyrYvvvndrtviVdpqtrr 59
                +lP +V+ r +P   ++ p+y Y+ v  +tv   p++rr
  CDO72692.1 35 TLPLQVNTRRIPMHKTVtPTYTYTDVTVKTVTASPNKRR 73
                69***********988559*****************998 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.0   0.00013       1.2     188     285 ..      91     176 ..       7     185 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00013
       RIFIN 188 vtslvkaikeeyeescllklkkskaaltsakekekkeasskekikkkvekivekaekkaaaaaaeaaaeataeaekaetaaveattaslqtaiiasiv 285
                 +++l++++++++            + + ++++++ ++ + ++  + ++++ ++++++++++ +++a+++ t++a+ ++ta+v++ t+ ++t+   s +
  CDO72692.1  91 TSTLTRTVTSTT------------TSTGTTTSTTVSTCTLRTLLTATTTARATSITTSTSTVTSTATRTSTETATGTRTATVTSFTTDVETTTATSTT 176
                 223333333332............22222222222222222223333333333444444444444445555555555555555555555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1526  (0.0851135); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 1406.32
//
Query:       CDO72693.1  [L=204]
Description: hypothetical protein BN946_scf184985.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-18   67.1   0.0    2.2e-18   66.9   0.0    1.0  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.18   10.1   0.0        0.2   10.0   0.0    1.0  1  DUF2194         Uncharacterised protein conserved in bacteria
        0.2   11.2   0.0       0.28   10.7   0.0    1.2  1  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   3.7e-22   2.2e-18       2     170 .]      12     180 ..      11     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 3.7e-22
                     HH--B---B-S--.--HHHHHHHHHHH.HTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEE CS
  Nitroreductase   2 rkRrSiRkFddep.vpkeelekileaa.rraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvli 94 
                     ++RrS+ k ++e+ +p+e++e+i++ a  +aP+++n+q+ r v++  +e+ +kl+++ l+ l+++  ++ +   +      +k + + ag  +++
      CDO72693.1  12 KNRRSVYKISSESpIPDEKIEEIVKEAvKHAPTSFNSQSSRAVLL-LGEEHKKLWDITLNVLREIVPPENFPVTE------AKIKNFAAGRGTVL 99 
                     89*****9999999**********988799***************.899999*****************999986......56666666666666 PP

                     EE.....---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  95 vi.....vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     ++      +tl+     ++++  +++ +  g+    +++a++a+Glg+  +++  +  ++v+  ++lp  +++++ +++G+
      CDO72693.1 100 FFedqevIKTLQSTYPIYHDQFPAWSEHANGMLQFIIWTALEAEGLGATLQHYNPIITPKVMSTWNLPTSWSLIAQMPFGK 180
                     66699999999*********************************************************99*********96 PP

>> DUF2194  Uncharacterised protein conserved in bacteria (DUF2194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   3.4e-05       0.2     223     323 ..      32     171 ..       6     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.4e-05
     DUF2194 223 qkeikkileyakievdvvevee...............LlkyrliiitdakyletkeikkylesGGtvilitkee..kikveklvlekelfpltnea... 301
                 +  +k+++++a   ++++++                 L   r i+ ++  ++++ +ik++    Gtv++  ++e  k+ ++   + ++ fp  +e    
  CDO72693.1  32 EEIVKEAVKHAPTSFNSQSSRAvlllgeehkklwditLNVLREIVPPENFPVTEAKIKNFAAGRGTVLFFEDQEviKTLQSTYPIYHDQFPAWSEHang 130
                 44566777777777777777777888888888888889999*****************************99762245567777888888888777676 PP

     DUF2194 302 ..ni.................kitelaklvssddktpviWe 323
                   ++                  +++ ++ v+s  ++p +W+
  CDO72693.1 131 mlQFiiwtaleaeglgatlqhYNPIITPKVMSTWNLPTSWS 171
                 66224455556666666666666667777777778888885 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.6e-05      0.28     140     180 ..      12      52 ..       3      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.6e-05
                     -----HHHHBSS-GGGS-HHHHHHH.HHHHTS--GGG----E CS
  TM1586_NiRdase 140 akrkpleelcevkeeelpewfkeil.eaarlAPsAlNqqpwr 180
                     ++r+++ ++++      +e+++ei+ ea+  AP+++N+q  r
      CDO72693.1  12 KNRRSVYKISSESPIP-DEKIEEIVkEAVKHAPTSFNSQSSR 52 
                     6778888888666654.899****9568999********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1591.66
//
Query:       CDO72694.1  [L=176]
Description: hypothetical protein BN946_scf184985.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        7.1    4.4   9.2        8.7    4.1   9.2    1.0  1  FSIP2           Fibrous sheath-interacting protein 2
        7.2    5.9   7.9        9.8    5.5   7.9    1.1  1  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
        7.3    6.4  12.1        8.5    6.2  12.1    1.2  1  RIFIN           Rifin
        8.3    5.3   6.7         10    5.0   6.7    1.0  1  Miga            Mitoguardin


Domain annotation for each model (and alignments):
>> FSIP2  Fibrous sheath-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.2    0.0019       8.7     790     866 ..      80     156 ..      64     165 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0019
       FSIP2 790 ekkpveskvaspkstlstsslkkflslskccqptssaniesieassnqiiesketevkravaeldvatskslleets 866
                 ++ +++s+ +++ +t+sts+l+  l+ +++ ++ts+++++s+ +s+++ + ++ ++  r+++ +  +t  +++++ts
  CDO72694.1  80 VTSTTTSTGTTTSTTTSTSTLRTTLTATTTARATSTTTTTSTVTSTATRTSTETATGTRTATITSFTTDIETATATS 156
                 445566777788999*********************99999887777666666555555555555555444444444 PP

>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.9    0.0022       9.8      61     152 ..      65     157 ..      61     164 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0022
        6PGD  61 lrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvpvptiaeavfaRllSslkeervkaskllkeeee....keeedkeefiedlrkAlyask 152
                  ++ d++  ++l + ++ ++ + GT + t+++  +l    +t+++ ++aR+ S+ +++ +  s++ ++++e    ++++  ++f++d+++A+ +s+
  CDO72694.1  65 AARADPTVTSTLTETVTSTTTSTGTTTSTTTSTSTLR---TTLTATTTARATSTTTTTSTVTSTATRTSTEtatgTRTATITSFTTDIETATATST 157
                 5566665567999999999999999988888876665...56677777888888887777666666432222345666677899999999998876 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.1    0.0019       8.5     189     284 ..      74     157 ..       4     168 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
       RIFIN 189 tslvkaikeeyeescllklkkskaaltsakekekkeasskekikkkvekivekaekkaaaaaaeaaaeataeaekaetaaveattaslqtaiiasi 284
                 ++l+++++++            ++ + +++++++++++ +++ + ++++ ++++++++++ +++a+++ t++a+ ++ta++++ t+ ++ta   s 
  CDO72694.1  74 STLTETVTST------------TTSTGTTTSTTTSTSTLRTTLTATTTARATSTTTTTSTVTSTATRTSTETATGTRTATITSFTTDIETATATST 157
                 1222222222............11111122222222222222222222222233333333334444444444444445555555555544444444 PP

>> Miga  Mitoguardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.7    0.0022        10      17     136 ..      34     153 ..      19     171 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0022
        Miga  17 vllavalga.vvlallarylkrrrekkkqkssaeqeelakevlktasvkkrasekksrssssksndtlslas....skassssaklsgslqslasvksv 110
                 v+ ++a+ + v+ ++++     rr  ++++ +a+ +  ++++l+++ v  ++++ ++++s++ s +tl+++     +  ++s++ +++ ++s a   + 
  CDO72694.1  34 VVTVTAAPStVTHVIAVTASPERRDYHPHAVAARADPTVTSTLTET-VTSTTTSTGTTTSTTTSTSTLRTTLtattTARATSTTTTTSTVTSTA---TR 128
                 4555555441444444445556666666655555555555555554.44445555555556666666665551000333333333444444444...33 PP

        Miga 111 nsssssaaansaswdkeeeeelklen 136
                 +s+++++ +++a++ + ++ +++++ 
  CDO72694.1 129 TSTETATGTRTATITSFTT-DIETAT 153
                 4433333333222222221.111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1918  (0.106978); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 1206.03
//
Query:       CDO72695.1  [L=186]
Description: hypothetical protein BN946_scf184985.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   10.1   3.2       0.12    9.9   3.2    1.0  1  MOR2-PAG1_mid  Cell morphogenesis central region


Domain annotation for each model (and alignments):
>> MOR2-PAG1_mid  Cell morphogenesis central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.2   6.9e-06      0.12     730     844 ..      48     177 ..      30     186 .] 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.9e-06
  MOR2-PAG1_mid 730 akrvslylaricpqqtidhlvyela.qrmledsvepvrpsdskldtsssvvlefsqgpaaaqvaslvdsqphm...........spllvrsslegp 813
                    +k v+  ++  +p  t+dh+   ++ +  l+d+  pvr s +++dt+++ v   ++  a+ +v++ v s               s   vr +    
     CDO72695.1  48 CKAVTSNVTSFSPTYTVDHVTSTITvHGNLNDKRAPVRTS-TEFDTTTTTVTTTARATATERVTATVTSTATAtststttstatSTATVRVTSTPV 142
                    57788888999**********99872569*********99.99***********999999998777666544310000000000333344444444 PP

  MOR2-PAG1_mid 814 lrnasgslswrt....vtgrsvsgplsslaeevai 844
                    + n+  s s+ t    +tg   s   ++  ++v++
     CDO72695.1 143 VTNTVTSTSFTTetdtATGTRTSTSTTTTVSTVSV 177
                    44444444444433444454444444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2014  (0.112332); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:00.51
# Mc/sec: 1096.19
//
Query:       CDO72696.1  [L=476]
Description: hypothetical protein BN946_scf184985.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-18   64.6   0.0    1.3e-17   63.8   0.0    1.3  1  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   7.3e-22   1.3e-17      59     173 ..     311     429 ..     260     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 7.3e-22
                     -GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----.....SEEEEESSGGGS-HHHHHHH CS
  Methyltransf_2  59 dleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPea.....DaillkrvlhDwsdekcvkl 148
                     dl++ ++lvDvGGG+G +  +++ a+P+ikviv D p+V +  k   +  e+ r++f   d+f+   P a     D++l+  vlhDw+d++c+k+
      CDO72696.1 311 DLQPDSVLVDVGGGIGSTSLTVALAHPHIKVIVEDRPQVSWGSKFA-HIFESGRMTFRVRDLFEPFKPLAsekapDVFLIRLVLHDWQDDDCRKM 404
                     6888899*********************************999876.88999***********76666433344699999*************** PP

                     HHHHHHH--TT-EEEEEE----TTS CS
  Methyltransf_2 149 LkrvkkalpagGkvivveavlgadp 173
                     L+ +++a  ++ k+++ +++l+ + 
      CDO72696.1 405 LQVLRSAAGPNTKLLIGDMLLPFAC 429
                     ******************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3318.33
//
Query:       CDO72697.1  [L=309]
Description: hypothetical protein BN946_scf184985.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-10   41.2   0.0    2.6e-10   40.5   0.0    1.4  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.4e-14   2.6e-10       2      77 ..     174     248 ..     173     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.4e-14
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 Gv+hgG +++llDe ++ ++     + ++ v+++l+i++++p r ++ +++++++ +++++ a v+ +v d +gr+
  CDO72697.1 174 GVIHGGLLATLLDESLARVALLNLPE-KVGVTANLNINYKAPTRADQFIVIKVKLDEAKGRKARVSGTVEDMEGRV 248
                 9************************9.******************************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2291.37
//
Query:       CDO72698.1  [L=200]
Description: hypothetical protein BN946_scf184985.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1710  (0.0953762); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 1448.92
//
Query:       CDO72699.1  [L=187]
Description: hypothetical protein BN946_scf184985.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1620  (0.0903564); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.34s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 1137.24
//
Query:       CDO72700.1  [L=146]
Description: hypothetical protein BN946_scf184985.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1026.83
//
Query:       CDO72701.1  [L=205]
Description: hypothetical protein BN946_scf184985.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1682  (0.0938145); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 1296.98
//
Query:       CDO72702.1  [L=624]
Description: hypothetical protein BN946_scf184985.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-08   33.2   0.0    4.3e-06   26.2   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.2e-08   33.3   0.0      1e-07   32.1   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    8.3e-07   27.8   0.2    0.00072   18.1   0.1    2.8  2  FMO-like       Flavin-binding monooxygenase-like
      1e-05   24.9   0.0    2.1e-05   23.9   0.0    1.4  1  Thi4           Thi4 family
    0.00015   21.8   0.1      0.052   13.5   0.0    2.9  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0053   16.1   0.3        3.3    6.9   0.3    3.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.031   13.4   0.2       0.05   12.7   0.2    1.3  1  FAD_binding_2  FAD binding domain
       0.07   12.7   0.6       0.21   11.1   0.6    2.0  1  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.9e-09   4.3e-06       2     193 ..      36     270 ..      35     308 .. 0.69
   2 !    5.0   0.0    0.0055        12     184     243 ..     370     424 ..     361     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.9e-09
                  SEEEE--SHHHHHHHHHHHHH..TS-EEEEE.........TTHCHHHCSHHHHCHHHHHHHHHHHHH...............HHHHCHHHHCCCCHCC CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqa..gakvtlve.........legtclnggcllskallgvaedaeias...............evvkklnqgielllge 73 
                  +v+v+G+G+ G++a ++ +q+  ++ v+++e          ++  ++  c +++++ +   +++  +                 v+k++   +  lg+
   CDO72702.1  36 KVIVVGAGFSGITAGIRFRQKipNVSVAIYEkstgvggawFNNKYPGLACDIPSICYQLTFEEKR-LvrflppgaeirqyleGIVDKYKLAPHIKLGH 132
                  79******************555*******66666555555555555555554444443333333.25899999888888885555555554444444 PP

                  TCEEEEESC..EEEEETEEEC......TCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.......SEEEEES-SHHH CS
                  xxxxxxxxx..xxxxxxxxxx......xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx RF
  Pyr_redox_2  74 evvkidpgk..kkvklekkke......gdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllp.......krivvvGgGyiG 154
                  ev++  +++  +k +++ +++       ++++ + d l+ A Gs  +   ++i+G+++  g+l ++++  ++  +++++       k + ++G G  +
   CDO72702.1 133 EVTHAQYDEpsGKWHVRIRRThpatgkVEQFEDTGDVLFTAFGSldRWSWPDIKGLETFKGEL-HHSAGFDPCGKAWQEvaeawkdKTVGIIGVGSSA 229
                  44444444333777776666699997777777788*********7777777*****5555555.6666666666666666667777************ PP

                  HHHHHHHHHHT-EEE.EEESSSSSS.TTS-HHHHHHHHHHH CS
                  xxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 155 vElAaalaklgkevt.lveardrll.raldkelsaaleeal 193
                  v l  al    k+v+ +v   ++l  +     ++++l++  
   CDO72702.1 230 VQLVPALQPRVKKVYnYVRGKTWLAvPFGSTGFAEFLQRDA 270
                  *9988877776665425555555544444456666666655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0055
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstel 243
                  ++  +l+ea+    v++   + +k++++ g     ++edg+  + d ++ a+G+ +  +l
   CDO72702.1 370 RVPTCLQEAHSGARVDFI-SSPIKRVTETG----IETEDGQHQELDVLFCATGYDATYQL 424
                  566789999999999999.88999999777....69******************998554 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   4.4e-11     1e-07       1      54 [.      39      94 ..      39     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 4.4e-11
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvdygahifhg 54
                   +vGaG+sG +a  + +++  +++v ++ek++++GG +  +++pg ++d +   +  
     CDO72702.1 39 VVGAGFSGITAGIRFRQKipNVSVAIYEKSTGVGGAWFNNKYPGLACDIPSICYQL 94
                   8****************999****************************99887744 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   3.2e-07   0.00072       3     228 ..      36     262 ..      34     300 .. 0.70
   2 !    5.6   0.0     0.002       4.4     298     336 ..     387     426 ..     381     434 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.2e-07
    FMO-like   3 kvaviGaGvsGlas.ikccle.egleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflh.nsklleylklfakefd 98 
                 kv v+GaG sG+++ i+   +  ++  + +e+s  +GG w f+ n   G a    s+         c+     ++    fl+   ++ +yl+   ++++
  CDO72702.1  36 KVIVVGAGFSGITAgIRFRQKiPNVSVAIYEKSTGVGGAW-FN-NKYPGLACDIPSI---------CYQLTFEEKRLVRFLPpGAEIRQYLEGIVDKYK 123
                 6888888888875426655442466777888888888888.44.3445666555554.........44322223344555541578999********** PP

    FMO-like  99 llkyiqfkttvcsvkkrpdfstsGqwevvtekegkk..esavfdav..mvctGhhvnphlplesfpGiekfkGqyfhsrdy........kepevfkgkr 185
                 l  +i++   v+  +       sG+w+v  ++      +++ f+    ++ t +            G+e fkG++ hs  +           e++k+k 
  CDO72702.1 124 LAPHIKLGHEVTHAQ---YDEPSGKWHVRIRRTHPAtgKVEQFEDTgdVLFTAFGSLDRWSWPDIKGLETFKGELHHSAGFdpcgkawqEVAEAWKDKT 219
                 *****9988776544...44579****98766543301444454321133455555555555566799**********8873333222124689***** PP

    FMO-like 186 vlviGlGnsggdiavelsrtaeqvllstrsGswvlsrvsdsGy 228
                 v +iG+G s+ ++   l    ++v+   r  +w+      +G+
  CDO72702.1 220 VGIIGVGSSAVQLVPALQPRVKKVYNYVRGKTWLAVPFGSTGF 262
                 *********************************9776666665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.002
    FMO-like 298 vkssvkeltetsaifedgtveedidvvifatGy..tfafpf 336
                 + s +k++tet +  edg + +++dv+  atGy  t++ pf
  CDO72702.1 387 ISSPIKRVTETGIETEDGQH-QELDVLFCATGYdaTYQLPF 426
                 67789********9999976.569*********44455566 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.4e-09   2.1e-05      13      58 ..      30      75 ..      27      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 9.4e-09
                HHHTEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4 13 lkyaesDvvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58
                ++y    v++vGaG sG+ta+  + +k p++ vai e+s  +GG aw
  CDO72702.1 30 DEYRPIKVIVVGAGFSGITAGIRFRQKiPNVSVAIYEKSTGVGG-AW 75
                6788899******************999***********99987.44 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.3e-05     0.052       2      56 ..      39      89 ..      38     132 .. 0.85
   2 ?   -2.3   0.1       1.8     4e+03       2      16 ..     222     236 ..     221     243 .. 0.83
   3 !    5.2   0.0    0.0085        19      97     155 ..     364     418 ..     300     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpa 56
                   +vGaG++G+++  r+ ++     ++++ ++++s+   g++w  ++ + l   +p+
     CDO72702.1 39 VVGAGFSGITAGIRFRQKI---PNVSVAIYEKSTGV-GGAWFNNKYPGLACDIPS 89
                   8**************9995...9*********8877.89**99998888877776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
  NAD_binding_9   2 ivGaGprGlavlerL 16 
                    i+G G +++ ++ +L
     CDO72702.1 222 IIGVGSSAVQLVPAL 236
                    9*******9998776 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0085
  NAD_binding_9  97 GrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                      Y ++++ + l+++++g +v+++++ + +++e++    + ++dg++ ++d ++ A+G 
     CDO72702.1 364 RVYSAARVPTCLQEAHSGARVDFISSPIKRVTETG----IETEDGQHQELDVLFCATGY 418
                    5799999999*********************9884....6789*************995 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.3    0.0015       3.3       1     198 [.      38     251 ..      37     256 .. 0.48
   2 ?    3.1   0.0     0.021        48     234     273 ..     390     424 ..     364     447 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka.gledylilEkg.nignsiyr..ypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksf 94 
                  i++GaG  G++a+i ++++    ++ i Ek   +g ++ +  yp     i +     +l++ +             l +  + ++e+ +Yl+ +++++
   CDO72702.1  38 IVVGAGFSGITAGIRFRQKiPNVSVAIYEKStGVGGAWFNnkYPGLACDIPSICY--QLTFEEK-----------RLVRFLPPGAEIRQYLEGIVDKY 122
                  7999999999999998765234477888887555555543113333332222111..1111111...........12233445677777777777777 PP

  Pyr_redox_3  95 el..piklfeeVesvkk..edegfevetske........ty..eAkkviiAtGefdkPnklnipGeek.lvkhyskv......kefhkya....gqkv 167
                  +l  +ikl +eV+  +    +++ +v+ ++         ++  + + ++ A G  d+  +++i+G e  + + ++        k+++++a    ++ v
   CDO72702.1 123 KLapHIKLGHEVTHAQYdePSGKWHVRIRRThpatgkveQFedTGDVLFTAFGSLDRWSWPDIKGLETfKGELHHSAgfdpcgKAWQEVAeawkDKTV 220
                  77444777777766665212344555433321111111111112334556666666666666666664322222221223333334333222225566 PP

  Pyr_redox_3 168 vViGgknSavDaAlelvrkgaeVtvvtrgse 198
                   +iG + Sav     l  + ++V  ++rg++
   CDO72702.1 221 GIIGVGSSAVQLVPALQPRVKKVYNYVRGKT 251
                  6666666666666666666666666666655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.021
  Pyr_redox_3 234 evkeikekeeeykvktedgkkvevkddvvlatGykpdlsf 273
                   +k+++e      ++tedg++ ++ d  + atGy+ ++++
   CDO72702.1 390 PIKRVTE----TGIETEDGQH-QELDVLFCATGYDATYQL 424
                  3444443....3688999876.444777777***998754 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.2e-05      0.05       2      37 ..      37      74 ..      36      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.2e-05
                   EEEE--SHHHHHHHHHHHH..TTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaae..aGlkvavvekeqefgga 37
                   viV+G+G++G +A+++ ++   + +va+ ek   +gga
     CDO72702.1 37 VIVVGAGFSGITAGIRFRQkiPNVSVAIYEKSTGVGGA 74
                   9****************995446699999999988886 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   9.3e-05      0.21       1      40 [.      36      78 ..      36     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.3e-05
                EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTSSGGGSS CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g...VtllekgdiagsgaSgrn 40
                +v+++G+G  G+++     ++ +   V+++ek+  +g ga  +n
  CDO72702.1 36 KVIVVGAGFSGITAGIRFRQKiPnvsVAIYEKSTGVG-GAWFNN 78
                59****************66564899*******8888.876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4002.83
//
Query:       CDO72703.1  [L=1832]
Description: hypothetical protein BN946_scf184985.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-20   73.1   0.0    8.3e-20   71.3   0.0    1.9  2  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    1.8e-09   37.9   0.0    3.4e-09   37.0   0.0    1.5  1  RNase_H          RNase H
    7.8e-05   22.5   0.6     0.0013   18.6   0.0    2.4  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase
     0.0006   19.4   1.4     0.0027   17.3   1.4    2.1  2  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.01   16.5   0.3      0.043   14.5   0.0    2.2  2  zf-RVT           zinc-binding in reverse transcriptase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.42   1.5e+03     159     207 ..     810     858 ..     790     878 .. 0.79
   2 !   71.3   0.0   2.3e-23   8.3e-20       3     206 ..    1044    1266 ..    1042    1302 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.42
                 ...TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE. CS
       RVT_1 159 kgvtllrYaDDililskskeelqelleaveewlkesglkinpeKtklvl 207
                  ++tl + +DD+  +++++  l +    +++w ++   ++ +eK +l+ 
  CDO72703.1 810 FDNTLQALMDDLQATIEEEVPLTKETPYTKRWWSKELTSLRKEKERLAR 858
                 47889999***********999999999999999999999999988775 PP

  == domain 2  score: 71.3 bits;  conditional E-value: 2.3e-23
                  -TT.......S-EEE......-THHHHCTB--...........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GG CS
       RVT_1    3 Kkg......pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleel 88  
                  K+g      ++s+Rpi+lls+  k+l++ +a+ L   +   +ll + q++ r gr t d++   ++ +k +++++    +++lD+k+a    + e+l
  CDO72703.1 1044 KPGkddytvAKSWRPIALLSCMSKILSRCVADVLVYEAerLSLLANLQFRGRAGRTTTDSLhlvTKTVKDAWRQGHVASVVFLDIKSASPAASPERL 1140
                  5555568889**********************9999999999**********************9999999************************** PP

                  GGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH...HHH CS
       RVT_1   89 lrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee...lqe 182 
                  ++ l   ++p++ +++++  l++r++ ++++   s ++ ++ g+ qG++lS +l+ ++ ++l+ + ++   g   +  +DD+ +++++k+    +++
  CDO72703.1 1141 FYNLRMRGIPREYVEWLRIKLTGRRTQLKFDDYVSAPFDIESGIDQGCPLSVILYAFYNSDLIDSADTS-DGELAVGSMDDVALVVTGKTYdicHEK 1236
                  ******************************99988********************************97.899999**********99665566544 PP

                  HHHHH......HHHHHHTT--BEGGG-EEE CS
       RVT_1  183 lleav......eewlkesglkinpeKtklv 206 
                  + + +       +w + ++ +++ +K  l+
  CDO72703.1 1237 IRRFMdrpggaMDWSRTHNSSFSLDKFALL 1266
                  444431111112344445555555555555 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   9.4e-13   3.4e-09       4     142 ..    1514    1651 ..    1511    1652 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 9.4e-13
                  EEEEEEEEEECTTTCEEEEEEECTT....E...EEEEEEC.CCCHHHHHHHHHHHHHHHTT.SC....SEEEEEES-HHHHHHHHCCCHHHHHTTSS CS
     RNase_H    4 vvvYtDGsclgnpgeggagavlykeg..ar...nisaple.eaqtnnraELsAvieaLkalksd....ekvniytDSkYvvkgitqwvhrwkknawk 90  
                    +YtDGs     g  ga+avly  g  ar    +++  + e+ t   aEL  +   ++  ++d     +v i  D k v++   +++h     ++ 
  CDO72703.1 1514 WRIYTDGSDV-DGGV-GAAAVLYPPGrhARprcVYYHLGPsERHTVYEAELVGILLGMELIRQDrrcaGRVSIALDNKAVIQ--ASMLHSSAP-GRY 1605
                  569*****54.4444.55555554553433555444544589*************99994444445556788**********..667887533.332 PP

                  SETTSSBHTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H   91 ttseqkpvknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142 
                   t    +++ ++l  ll ++  + +++l+wv+gH+Gvp gNe+aD +Akeaa
  CDO72703.1 1606 LT----DIFHAQLNSLL-STRPHLRLTLHWVPGHQGVP-GNEAADDAAKEAA 1651
                  33....35566888888.4445789************9.***********97 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.5e-07    0.0013      32      98 ..     685     758 ..     676     767 .. 0.73
   2 ?    1.3   0.1     0.083     3e+02      43      83 ..     839     877 ..     806     900 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.5e-07
  Exo_endo_phos_2  32 kiiilGDfNakhplWgsedtds......sargeeLiefleehslsllnllksgptfkssng..sstiDltltsdn 98 
                      + i lGDfN++h+ W+++ +         +++e L+++l+  +l ++ ++   pt +  ++  ++  D ++ ++ 
       CDO72703.1 685 QAIWLGDFNRHHQRWDDPGNVHlfttanVRQAEVLTRYLDVLGLDMALPPG-IPTLEHMRTknHTRPDNVFCTKG 758
                      7899*************44333666666999**************444433.36666665544677777777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.083
  Exo_endo_phos_2  43 hplWgsedtdssargeeLiefleehslsllnllksgptfks 83 
                      +  W++e t+ +++ e L+++ + h l  +++   + ++++
       CDO72703.1 839 KRWWSKELTSLRKEKERLARIAHRHRLDRAHPS--HAEYRR 877
                      567888776669****************55444..444443 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.4   7.5e-07    0.0027      20     164 ..     561     703 ..     544     786 .. 0.71
   2 ?   -1.9   0.0      0.56     2e+03      93     139 ..     816     890 ..     704     896 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.5e-07
                    HHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  20 drladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni 115
                    d+l++ +t+ d D+++LQE + d l+++  +  ++ ++++ ++     +  +   + + s+   t +     +   d  a ++r  +aa+l  +n 
     CDO72703.1 561 DDLLSKVTTADYDIIALQEPYLDRLALTRSTPHWRVVYPTVHR---ADPSRRSRAVLLISKKLSTNVWSPIAVPHPDVCAVTIRVEDAAPLHLFNL 653
                    333444444466*******999998888777766444444443...45555555555555555566666666666666666666666666666666 PP

                    .CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSC CS
                    .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 .ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrv 164
                      ++     v+ +  +   l  +++ +d g  +i++GDfN ++  +d + 
     CDO72703.1 654 yVDVKHDTAVHAAAWAMRGLGDWEDDDDDGPQAIWLGDFNRHHQRWDDPG 703
                    78888888888888888888888999999999*********999998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.56
                    ETSSSSGCEEEEEEEEEEEEEEE............................CCCHHGHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  93 efndlvaalrreplaakleqlni............................ashrdhdlvrdlqllalllqveal 139
                       d   a++ e +  + e+++                             + h++h+++r+ + ++ +  ++a+
     CDO72703.1 816 ALMDDLQATIEEEVPLTKETPYTkrwwskeltslrkekerlariahrhrldRAHPSHAEYRRFRNRYADAIRAAK 890
                    333333444444444444444446777777777777777777777778888888888888888888877776665 PP

>> zf-RVT  zinc-binding in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.7   1.7e+04      50      66 ..     413     429 ..     410     439 .. 0.79
   2 ?   14.5   0.0   1.2e-05     0.043      42      80 ..    1734    1772 ..    1709    1775 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
      zf-RVT  50 llkrgiesssrCqlCgq 66 
                 + +r i   +rC  C  
  CDO72703.1 413 VVRRDIIEPKRCVRCRS 429
                 5689999999*****86 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.2e-05
      zf-RVT   42 nrlptadnllkrgiesssrCqlCgqeeEtieHlfleCpf 80  
                  +++p +   ++ g ++s++C+ Cg+  E+++H +l+Cp 
  CDO72703.1 1734 GHIPLQTYFAQIGKAASANCPSCGEGPESVSHFLLRCPT 1772
                  667777777888888999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.49
# Mc/sec: 11278.92
//
Query:       CDO72704.1  [L=136]
Description: hypothetical protein BN946_scf184985.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 1046.38
//
Query:       CDO72705.1  [L=229]
Description: hypothetical protein BN946_scf184985.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-05   22.6   0.0    0.00025   21.1   0.0    1.8  1  HNH_2       HNH endonuclease
  ------ inclusion threshold ------
       0.09   12.8   0.0       0.16   12.0   0.0    1.3  1  EF_assoc_2  EF hand associated


Domain annotation for each model (and alignments):
>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.8e-08   0.00025       1      71 [.      23     127 ..      23     128 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.8e-08
       HNH_2   1 Cvitg.iddp...............s.lleaAHIiP.....................wslssffndl.........ilnrfeigrillekgstidspsN 52 
                 C++tg + d                     ++HI+P                     w ++     +                     ++  ++++ +N
  CDO72705.1  23 CMVTGrV-DTssylsgltslspgeiGgFSNCCHIFPdslanivpgaagpkeqesatvWTIL-----KrfgyediceE--L-----GFASTSANLHRLEN 108
                 8888842.22567777777777876335599*****6666666666666654444443333.....04333344231..2.....24577899****** PP

       HNH_2  53 gllLspdiHklFdqflfaf 71 
                  ++L   +H++Fd+  + f
  CDO72705.1 109 IMTLDVIVHEQFDRMNLWF 127
                 *************987665 PP

>> EF_assoc_2  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.16      47      60 ..      76      89 ..      71      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
  EF_assoc_2 47 ettWtvLrkFgYdd 60
                 t+Wt+L++FgY+d
  CDO72705.1 76 ATVWTILKRFGYED 89
                69**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1631.63
//
Query:       CDO72706.1  [L=142]
Description: hypothetical protein BN946_scf184985.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.1    5.2   7.7        7.5    5.3   7.7    1.0  1  Apt1      Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.7   0.00042       7.5     326     384 ..      12      55 ..       1     111 [. 0.49

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00042
        Apt1 326 ssssssssssssassssssssrssslelrlkptsstssssssessssssskkrsseess 384
                 +s++ss  sss++  +s+sss s+s + r               s+s+++ ++sse+ s
  CDO72706.1  12 ASTTSSDASSSTQGGHSDSSSASTSFSTR---------------SDSTTTTSSSSETHS 55 
                 11111122222222222222222222222...............111111111222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 924.51
//
Query:       CDO72707.1  [L=229]
Description: hypothetical protein BN946_scf184985.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        0.1   13.1   0.0       0.13   12.7   0.0    1.2  1  Lipocalin_8  Lipocalin-like domain


Domain annotation for each model (and alignments):
>> Lipocalin_8  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.5e-06      0.13       3      71 ..      64     130 ..      63     167 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.5e-06
  Lipocalin_8   3 lssCelktsk.ngdldGfWqleevdtlatggvvdlkeervfwsiqlklievaekqgngetgktlgrfeyk 71 
                  ++sC +kt + n+ l+G+W+  + d  +++   ++++  vf +       +   + ++ t+++++ f  +
   CDO72707.1  64 CTSCAVKTVDkNETLNGTWHEATYDVQHQQ---QITATLVFNGTAVYAYGIVPHTDSNATSSIYLSFILD 130
                  68***99976599*******9999644444...4566777777666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1530.68
//
Query:       CDO72708.1  [L=556]
Description: hypothetical protein BN946_scf184985.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-19   68.1   0.0    2.5e-17   62.9   0.0    2.4  2  Methyltransf_2  O-methyltransferase domain
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.042   13.4   0.0    1.5  1  MTS             Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   2.7e-21   2.5e-17      62     178 ..     318     450 ..     296     459 .. 0.82
   2 !    2.6   0.0    0.0077        69     184     210 .]     510     535 ..     471     535 .. 0.71

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.7e-21
                     G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.----....-TTEEEEES-TTTS-.....--......--SEEEEESSGGGS CS
  Methyltransf_2  62 glkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sage....eervefvgGdffkds.....lP......eaDaillkrvlhDw 140
                     + +++vDvGGG+G +  + ++ yP+++++v Dl + ve A++   s ++    + rv+++  dffk +     +P      +a a++++rvlh w
      CDO72708.1 318 QDSVVVDVGGGIGSVSVQLAEPYPHLRLVVQDLQKTVELAPKIWgSKHKdlfdSGRVSYQVQDFFKPQpavfnIPgvgpvkHAAAYIVTRVLHNW 412
                     55789************************************998544331222689*********853333334422223379************ PP

                     -HHHHHHHHHHHHHH--TT-EEEEEE----TTS---HH CS
  Methyltransf_2 141 sdekcvklLkrvkkalpagGkvivveavlgadpsgele 178
                      d++c ++Lk+++ a  ++ k+i+ e++l+ + +++ +
      CDO72708.1 413 PDAQCIEILKNLRAAAGPDTKLIIHEMILPLACEDPSA 450
                     *****************************988877765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.0077
                     HHHHHCSS-----HHHHHHHHHHCT-E CS
  Methyltransf_2 184 limlvqteGkeRteaeyeellseaGfs 210
                       m+   + keRt +e+++l  +aG++
      CDO72708.1 510 Q-MMSVMNSKERTFQEMRDLTLKAGWR 535
                     3.4555599****************85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.7e-06     0.042      27      64 ..     316     351 ..     309     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.7e-06
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 lp+  +  v+D+G G+G ++++la+ +p++++++ d +
  CDO72708.1 316 LPQ--DSVVVDVGGGIGSVSVQLAEPYPHLRLVVQDLQ 351
                 555..4569*********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3800.99
//
Query:       CDO72709.1  [L=415]
Description: hypothetical protein BN946_scf184985.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2720.02
//
Query:       CDO72710.1  [L=410]
Description: hypothetical protein BN946_scf184985.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-29  103.6   0.0    2.3e-27   95.9   0.0    2.1  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   1.3e-31   2.3e-27       4     370 ..      23     400 ..      20     401 .. 0.83

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 1.3e-31
                  BTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGG CS
  Aminotran_5   4 dsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhan 101
                  d+a+ +q  ++V+d++++y+ + n +   + +  +   t+ v    e  +el+naes +ei + s++t  ++  a+++++ ++pg+ei++t  eh +n
   CDO72710.1  23 DNAGGSQCVADVVDRISDYLLNTNVQL-GADYPVSVASTARVASGSEAARELFNAESVDEIAYGSSSTMLVENLARAIEADIHPGEEIIITG-EHESN 118
                  9******************88777666.47888999999***************************************999*********96.9**** PP

                  THHHHHHHHHHTEEEEEEEBETTSCBE.........GGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHH.T......T-EEEEE-TTTTTTS CS
  Aminotran_5 102 lvpwqelakrtgakvkvipldeegeld.........ldelekllnektklvaithvsnvtGtiqpveeigklakk.k......galvlvDaaqavghi 183
                    pw++la r+ga ++ +p ++  ++          ld+l  l++ kt+lva+t+ sn++G + pv++i+++a++ +      ++ ++vD ++ ++h+
   CDO72710.1 119 AGPWKRLAARKGAIIRLWPETRLAQYPenpyavglqLDALLPLISAKTRLVAFTACSNILGSVVPVQDIVRAARErArdlgarKIEFCVDCVAYAPHR 216
                  ****************9998876665434444555599999999**************************99986312221125789*********** PP

                  ---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHH........CHHH CS
  Aminotran_5 184 pidvkklgvDflafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyle........eigl 273
                  +id +              +gP   +vly+r + l++   l        +   +  +++++p+k++ G p    ++g++a+ +yl+        e   
   CDO72710.1 217 QIDGQV-------------YGPH-ASVLYARASSLQNS--LT-------SLAHHFLKVDNKPYKLQPGGPGYELVYGCTAVPDYLRsltpagtlEAAW 291
                  ***875.............5665.69******988888..22.......333366778899***********************97133322222345 PP

                  HHHHHHHHHHHHHHHHHHCT..STTEEEES.-B-.CTCBSEEEEEE...TTCSHHHHHHHHHHT.TEEEEEE-TTTHHHHHHTT.S.....-EEEEE- CS
  Aminotran_5 274 eaiekhekelaeyllerlks..lpgvrlygpdka.errasivsfnf...kgvhaedvatlLdee.gIavrsGhhcaqplmkrlale.....gtvRaSl 359
                  +a+++he++l e ll  l+     gvr++g + a   r  +vsf++   + + +  v+++ d + ++ +r Gh  a  l++ l+ +     g+vR+Sl
   CDO72710.1 292 AAVAEHEQTLLEPLLGYLRGkrERGVRIVGEEGAgAGRVPTVSFVVvgdRALRSPGVVKAFDAKgDVGIRYGHFYAYTLVDQLDPKinvddGVVRISL 389
                  67888999999999999976336788999954441456778888885555567789999999999***********99999999889999******** PP

                  -TTS-HHHHHH CS
  Aminotran_5 360 yiynteeevdr 370
                   +ynt +ev+r
   CDO72710.1 390 VHYNTVDEVKR 400
                  *********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2806.91
//
Query:       CDO72711.1  [L=192]
Description: hypothetical protein BN946_scf184985.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1446.40
//
Query:       CDO72712.1  [L=475]
Description: hypothetical protein BN946_scf184985.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-13   48.3   0.0    1.3e-12   47.7   0.0    1.2  1  Plavaka       Plavaka transposase
  ------ inclusion threshold ------
       0.26   11.0   1.7        1.1    9.1   0.1    2.5  3  Importin_rep  Importin 13 repeat


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.4e-16   1.3e-12     244     324 .]      24      93 ..      16      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.4e-16
     Plavaka 244 akkkelgdleeselrtreetlelleeaadelkklwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                 +++++l++ ++ ++r++e+tl+l+  a+d +k lw+ey + +++        ++ ihell+pDlLHq+ikg +kdHlv+Wv
  CDO72712.1  24 VQASDLDTGQA-PRRSHEHTLALMD-AFD-PKVLWEEYSIISDT--------MVYIHELLSPDLLHQVIKGSLKDHLVTWV 93 
                 67888988654.9999999999855.556.9**********998........788*************************8 PP

>> Importin_rep  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00012       1.1      26      38 ..      61      73 ..      60      75 .. 0.91
   2 ?    0.4   0.0     0.059   5.3e+02       1      15 [.     128     142 ..     128     150 .. 0.88
   3 ?   -3.4   0.1      0.96   8.6e+03      14      23 ..     191     200 ..     190     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00012
  Importin_rep 26 IsDTlmylYeiLg 38
                  IsDT++y+ e+L 
    CDO72712.1 61 ISDTMVYIHELLS 73
                  9**********97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.059
  Importin_rep   1 qYPsdeeyssWsade 15 
                   ++P+   + +W+ d+
    CDO72712.1 128 RFPEGRGFKQWTGDD 142
                   5999999*****998 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.96
  Importin_rep  14 deKEqFRcYR 23 
                   d  E+F c R
    CDO72712.1 191 DSLERFHCER 200
                   6679***977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.56
# Mc/sec: 2569.83
//
Query:       CDO72713.1  [L=232]
Description: hypothetical protein BN946_scf184985.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   21.4   0.0    0.00018   20.9   0.0    1.2  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.8e-09   0.00018       1      40 [.     161     201 ..     161     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.8e-09
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegel.eeeepkwm 40 
                 F+n+++L++t+D++p gd++w+ ++v+++g++ ++  p+wm
  CDO72713.1 161 FANHEHLYATLDAIPLGDVTWEGFSVTYNGPIpNGVMPSWM 201
                 99****************************99777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.34s 00:00:00.90 Elapsed: 00:00:00.54
# Mc/sec: 1288.33
//
Query:       CDO72714.1  [L=611]
Description: hypothetical protein BN946_scf184985.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    8.7   3.4        3.2    7.4   3.4    1.7  1  BRD4_CDT  C-terminal domain of bromodomain protein 4


Domain annotation for each model (and alignments):
>> BRD4_CDT  C-terminal domain of bromodomain protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.4   0.00018       3.2       2      24 ..      40      62 ..      39      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00018
    BRD4_CDT  2 sldqqRelaRkrEqeRRrreama 24
                ++ q+Re+ +++E e R+++a+a
  CDO72714.1 40 EVTQERETKAREEEETRSKQALA 62
                678******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4057.36
//
Query:       CDO72715.1  [L=423]
Description: hypothetical protein BN946_scf184985.g135 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-27   94.7  40.1    8.8e-27   93.9  39.8    1.4  1  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.048   13.3   5.1       0.11   12.1   1.1    2.8  3  HCV_NS4b    Hepatitis C virus non-structural protein NS4b
       0.19   10.6  18.5       0.26   10.1   7.5    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9  39.8   1.5e-30   8.8e-27      29     352 ..     107     417 ..      78     418 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.5e-30
       MFS_1  29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 +s s+i+l+ +l  ++  +   + Gr+ d +G r ++ lg ++ +++ l+++ ++    ++ ++l   vl G+g ++lf  ++a++ +wf k +r++ai
  CDO72715.1 107 SSSSTISLIGSLQIFFLYFVGTLSGRVFDAYGTRVMIPLGTVICVFS-LMMVsLCqkDRVYqVFLSHGVLFGFGIALLFNPAVAVLGHWFRK-RRALAI 203
                 68999*********999******************************.66664667888998******************************.****** PP

       MFS_1 124 gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffg 222
                 g+ ++g++ G ++ p+l   l+ ++g++++  ila+v+l ++v++ l ++++ p ++  s ++          ++ ++ ++ +++ + + ++ +l f g
  CDO72715.1 204 GFTTGGSASGGVILPILLERLIPAVGFPWAVRILAFVLLACLVVACLTIRTRLPLSRHISFRTA---------ID-FGGFKDPRYAL-ASLGGFLLFYG 291
                 *****************************************99877888777777777766666.........88.9*******666.55555555568 PP

       MFS_1 223 fsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsl 321
                 f++ ++++ +y    +g +   +a +lla++ ++++++++l g+++d++g+ +  + a +++++++lgl l a+   ++ ++++ +l+G+++g ++++l
  CDO72715.1 292 FFIPYFYIQIY-GNFRGVP-PHIAKYLLAIMNAANVPSRILPGYIADKVGPLNVFIPAAAVCSVLLLGLWLPAHN--TASIVAFAALYGLFSGAFVSLL 386
                 888********.*******.455555699*********************9666666666666666666666666..6666668999************ PP

       MFS_1 322 lalasdlappeeagtasglfntagslggalg 352
                  +++++  p+e+ g+ +g + ++ ++++++g
  CDO72715.1 387 PTYVASISPREKLGARLGSVYMVVAVASLVG 417
                 ***************************9998 PP

>> HCV_NS4b  Hepatitis C virus non-structural protein NS4b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.036   2.2e+02     163     192 .]     209     238 ..     200     238 .. 0.87
   2 ?   -0.5   0.1      0.14   8.2e+02      41      88 ..     239     286 ..     231     287 .. 0.82
   3 ?   12.1   1.1   1.8e-05      0.11      39     100 ..     362     423 .]     326     423 .] 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.036
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HCV_NS4b 163 gasvvGvvlaliLrslkkegaeqWvNRLlt 192
                 g +  Gv+l ++L +l  +++  W  R+l+
  CDO72715.1 209 GSASGGVILPILLERLIPAVGFPWAVRILA 238
                 666789*********************997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.14
                 HHHHHHHHHHS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HCV_NS4b  41 fvsliqylaalstlprnPalavlasflagltsplttkvrlllallgGv 88 
                 fv l   ++a  t++   +l+  +sf  ++  +   + r +la lgG 
  CDO72715.1 239 FVLLACLVVACLTIRTRLPLSRHISFRTAIDFGGFKDPRYALASLGGF 286
                 5555556789999999999***********999999999999999996 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HCV_NS4b  39 tnfvsliqylaalstlprnPalavlasflagltsplttkvrlllallgGvvatklatpsaal 100
                 ++ ++ i+++aal++l    +++ l +++a+++   +   rl +  +  +va+ ++tp+a+l
  CDO72715.1 362 AHNTASIVAFAALYGLFSGAFVSLLPTYVASISPREKLGARLGSVYMVVAVASLVGTPTAGL 423
                 46678899***************************************************986 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.5    0.0012       7.1     260     352 ..     107     204 ..      91     218 .. 0.71
   2 ?   10.1   7.5   4.3e-05      0.26     219     366 ..     270     417 ..     201     423 .] 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0012
  MFS_1_like 260 tllGslvalgvvaeiplfff....aeklleklGhvklliiallayilrfllyaii...enawlvlpievLhgisfgllwaaaveyvskiapksleatgq 351
                 +  +++  +g + +i +++f    + ++++ +G ++++ ++ ++ ++ +++++++   ++  + l   vL g+ ++ll+  av +  + + k+ +a  +
  CDO72715.1 107 SSSSTISLIGSL-QIFFLYFvgtlSGRVFDAYGTRVMIPLGTVICVFSLMMVSLCqkdRVYQVFLSHGVLFGFGIALLFNPAVAVLGHWFRKR-RALAI 203
                 333333334443.444444412225678999************************9877778888899***************9999988766.44445 PP

  MFS_1_like 352 g 352
                 g
  CDO72715.1 204 G 204
                 5 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 4.3e-05
  MFS_1_like 219 lnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii.enawlv 316
                 +  +k+p++++  l  ++l   + i + ++++Y +  g +  ++  l+a+  +a++p  ++  ++ +k+G  ++ i a  +  + +l++ +  +n+  +
  CDO72715.1 270 FGGFKDPRYALASLGGFLLFYGFFIPYFYIQIYGNFRGVPPHIAKYLLAIMNAANVPSRILPGYIADKVGPLNVFIPAAAVCSVLLLGLWLPaHNTASI 368
                 4557888888888777777777777788899999999***************************************99999999998888778999*** PP

  MFS_1_like 317 lpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralG 366
                 + + +L+g+  g++ + + +yv+ i p++  +   g + ++ + + + +G
  CDO72715.1 369 VAFAALYGLFSGAFVSLLPTYVASISPREKLGARLGSVYMV-VAVASLVG 417
                 ***************************99887777765555.44555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 2749.77
//
Query:       CDO72716.1  [L=608]
Description: hypothetical protein BN946_scf184985.g136 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-10   39.6   0.0    4.4e-08   32.7   0.0    2.3  2  Methyltransf_2  O-methyltransferase domain
  ------ inclusion threshold ------
      0.033   13.7   0.0      0.072   12.6   0.0    1.5  1  MTS             Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.9e-12   4.4e-08      64     145 ..     293     389 ..     261     401 .. 0.71
   2 !    4.5   0.0    0.0021        18     174     210 .]     473     509 ..     463     509 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.9e-12
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.---....--TTEEEEES-TTTS-....----.....SEEEEES.SGGGS-HH CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sag....eeervefvgGdffkds....lPea.....Daillkr.vlhDwsde 143
                     +++vD+GGG+G +    ++ayP+++ +v D + Vv+ A+e   s +    e+ rv++++ dff+++    +P         ++l+r v h w d+
      CDO72716.1 293 SVVVDIGGGIGSVSVILSEAYPHLRFVVEDRAPVVSIAREAWgSKHadlfESGRVTYHAQDFFDEHqpfeVPGVgkvsqPSVFLARaVAHNWPDK 387
                     579***********************************998753332222679**********99622224422111112344443367777777 PP

                     HH CS
  Methyltransf_2 144 kc 145
                     ++
      CDO72716.1 388 DV 389
                     76 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0021
                     ---HHHHHHHHHHHHCSS-----HHHHHHHHHHCT-E CS
  Methyltransf_2 174 sgeletelvdlimlvqteGkeRteaeyeellseaGfs 210
                     +++ + +++d+ ml   + keRt +e+ +l+++aG++
      CDO72716.1 473 RASANGYILDISMLGLFDAKERTYREMDALAQSAGWK 509
                     556666778999**999******************85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     8e-06     0.072      32      92 ..     292     357 ..     284     364 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-06
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC......EEEEE-STTTT CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle......vevvasdvlee 92 
                 +  v+D+G G+G +++ l +++p+++ + v+  a  + +a+e + +++++      v+++a+d ++e
  CDO72716.1 292 DSVVVDIGGGIGSVSVILSEAYPHLRFV-VEDRAPVVSIAREAWGSKHADlfesgrVTYHAQDFFDE 357
                 4569********************8765.56667788888888877776665665566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4311.97
//
Query:       CDO72717.1  [L=620]
Description: hypothetical protein BN946_scf184985.g137 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-20   70.7   0.1    1.8e-18   66.6   0.0    2.4  2  Importin_rep_4  Importin repeat
    1.9e-07   31.5   6.6      0.058   13.9   0.1    6.1  6  HEAT_EZ         HEAT-like repeat
     0.0031   17.7   9.6        4.5    7.8   0.0    6.7  8  HEAT            HEAT repeat
  ------ inclusion threshold ------
      0.058   12.5   0.5       0.37    9.9   0.0    2.4  3  MMS19_C         RNAPII transcription regulator C-terminal
        1.1    9.3   4.2        1.9    8.5   4.2    1.4  1  Mito_fiss_reg   Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> Importin_rep_4  Importin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   4.9e-22   1.8e-18       5      90 .]     379     466 ..     376     466 .. 0.95
   2 ?    1.3   0.0      0.12   4.3e+02      27      50 ..     555     578 ..     539     601 .. 0.69

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 4.9e-22
  Importin_rep_4   5 edaaRqsalEllvtlaenaPkmvrkeaefteklvvqvLslmtev..eddeeWatsddlddddeedeyvaaeqalDRlalkLGGkallp 90 
                     +d++R++alE ++tl+e++P+m+r   ++++ +v  +L+ m e+  +d e W ++d ++d  +++   + e +lDR+a++LGG+a+lp
      CDO72717.1 379 DDEVRKAALEFMTTLSEAKPSMLRGVDAWVNIVVRGCLEGMGEIpeDDTEAWLEADPAEDPTDDNYPHTYEHSLDRIACALGGHAVLP 466
                     6789*****************************************999999*********9999778889***************997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
  Importin_rep_4  27 vrkeaefteklvvqvLslmteved 50 
                      r+ ++++++ v ++L ++++  +
      CDO72717.1 555 ARQPKRYVQEQVITTLAMVADASE 578
                     566666888888888888777644 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.074   2.7e+02       3      39 ..     155     188 ..     146     195 .. 0.73
   2 ?   -0.8   0.1      0.67   2.4e+03      40      51 ..     252     265 ..     240     280 .. 0.67
   3 ?   -0.7   0.0      0.61   2.2e+03      41      49 ..     379     387 ..     377     391 .. 0.84
   4 !   13.9   0.1   1.6e-05     0.058       1      30 [.     481     510 ..     481     512 .. 0.92
   5 !   10.1   0.1   0.00026      0.92       3      38 ..     512     548 ..     510     552 .. 0.89
   6 ?    2.3   0.0     0.071   2.5e+02       3      38 ..     562     597 ..     561     607 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.074
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnd 39 
                  R+aA + +    +g+p+l+ + + ++il  L ++L+d
  CDO72717.1 155 TREAAFRLF----AGCPNLIMDlHTDAILSILQNGLQD 188
                 588888888....7899996663666666666677776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.67
     HEAT_EZ  40 dsd..eVRaaAaga 51 
                 ++    VR aA++a
  CDO72717.1 252 SHLplQVRLAALRA 265
                 44433667777665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.61
     HEAT_EZ  41 sdeVRaaAa 49 
                 +deVR+aA+
  CDO72717.1 379 DDEVRKAAL 387
                 789999997 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 1.6e-05
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeil 30 
                 wr+R+a+++a++++a+g +  +q+++ +i+
  CDO72717.1 481 WRLRHAGLMAIAAIAEGTSKVMQQELGKIV 510
                 9**********************9987776 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00026
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeilpaLlalLn 38 
                 v ++Aa+aL + ++g+e+e+l p+++ i+  Ll+lLn
  CDO72717.1 512 VHAHAAAALINfCEGVERETLLPYLDGIVERLLKLLN 548
                 66788888857************************95 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.071
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLn 38 
                 v++ ++ +L+ +a     + +++ ++i+p+Ll+ ++
  CDO72717.1 562 VQEQVITTLAMVADASEATFAKHYKAIMPLLLSVMQ 597
                 788889999889999999999**********97765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.028     1e+02       5      29 ..     103     128 ..     101     130 .. 0.81
   2 ?   -0.7   0.0      0.66   2.4e+03       9      24 ..     148     163 ..     145     165 .. 0.73
   3 ?   -1.5   0.0       1.2   4.3e+03       1      13 [.     178     190 ..     178     192 .. 0.85
   4 ?   -0.8   0.4      0.72   2.6e+03      15      24 ..     257     266 ..     256     272 .. 0.79
   5 ?    4.4   0.0     0.016        56      12      29 ..     378     395 ..     377     396 .. 0.87
   6 !    7.8   0.0    0.0013       4.5       8      30 ..     475     497 ..     470     498 .. 0.90
   7 ?   -0.6   0.1      0.64   2.3e+03      16      30 ..     512     526 ..     509     527 .. 0.81
   8 ?   -2.3   0.0       2.2     8e+03       1      10 [.     588     597 ..     588     614 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.028
                 HHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAakaLgalae 29 
                 ll+ l + p+p VR  ++ ++++l+ 
  CDO72717.1 103 LLHSLlHEPAPLVRHKSVDTVTDLSN 128
                 55564488************999975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.66
                 HT-SSHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaL 24 
                   +++ + ReaA++ +
  CDO72717.1 148 ADSSNLHTREAAFRLF 163
                 45677778****9876 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHT-SS CS
        HEAT   1 llPlllkllsDps 13 
                 +l +l++ l+D+ 
  CDO72717.1 178 ILSILQNGLQDQQ 190
                 7899*******75 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.72
                 HHHHHHHHHH CS
        HEAT  15 eVReaAakaL 24 
                 +VR aA++a 
  CDO72717.1 257 QVRLAALRAS 266
                 69****9985 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.016
                 SSHHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgalae 29 
                 ++ eVR+aA++ +++l+e
  CDO72717.1 378 EDDEVRKAALEFMTTLSE 395
                 689*******99988876 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0013
                 HHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   8 llsDpspeVReaAakaLgalaev 30 
                 +l + +++ R a + a++a+ae+
  CDO72717.1 475 MLASHDWRLRHAGLMAIAAIAEG 497
                 7899*****************97 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHC CS
        HEAT  16 VReaAakaLgalaev 30 
                 V + Aa aL +++e+
  CDO72717.1 512 VHAHAAAALINFCEG 526
                 556699*******97 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2.2
                 HHHHHHHHHT CS
        HEAT   1 llPlllklls 10 
                 ++Plll+ ++
  CDO72717.1 588 IMPLLLSVMQ 597
                 7999998775 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.19   6.9e+02     159     197 ..     232     273 ..     209     292 .. 0.67
   2 ?   -2.8   0.0      0.73   2.6e+03     383     418 ..     476     511 ..     475     512 .. 0.86
   3 ?    9.9   0.0    0.0001      0.37     355     422 ..     519     594 ..     513     595 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.19
     MMS19_C 159 lsesasesqkqliilftailaalrkevkl...pdlsellnel 197
                 ls +a++ + + i++f a+++ l+ +v+l      +++ln+l
  CDO72717.1 232 LSANATSRSPRFISIFAALISHLPLQVRLaalRASAAFLNAL 273
                 556666666777788888888888888886654444444443 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.73
     MMS19_C 383 LdlpdaevkastLetlksileespslvsehlssLvp 418
                 L+ +d  ++ + L  +++i+e  ++++++ l ++v+
  CDO72717.1 476 LASHDWRLRHAGLMAIAAIAEGTSKVMQQELGKIVE 511
                 5567778999999********99*****99999985 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0001
     MMS19_C 355 ALshllkhvPkslllpeLptLlPlLlqaLdlpdae........vkastLetlksileespslvsehlssLvprLLk 422
                 AL + ++ v +++llp+L  ++  Ll+ L+   ++        v+  +++tl+ +++ s++++++h +++ p LL+
  CDO72717.1 519 ALINFCEGVERETLLPYLDGIVERLLKLLNPAASDparqpkryVQEQVITTLAMVADASEATFAKHYKAIMPLLLS 594
                 78888899999******************877777889************************************96 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.2   0.00053       1.9     125     190 ..     256     325 ..     231     376 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00053
  Mito_fiss_reg 125 LedELakLRaQIAkIVaaqeasnssaslelsdtpdllepksssaspslep..ssslppppppppppi....p 190
                    L+  La+LRa  A + a++ +++  ++++ s+tp  ++   + + ++l p  ++ ++p pppp+pp     p
     CDO72717.1 256 LQVRLAALRASAAFLNALDLSQQA-QRTSPSSTPLRSHXLLPTPXSRL-PrrPHRPSPAPPPPLPPHtipcP 325
                    7778999**998877777766654.55555555544443333333334.21122233444444444222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3979.74
//
Query:       CDO72718.1  [L=100]
Description: hypothetical protein BN946_scf184990.g1, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 739.46
//
Query:       CDO72719.1  [L=1060]
Description: hypothetical protein BN946_scf184990.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-123  411.5   0.0   3.4e-123  411.0   0.0    1.2  1  Plavaka   Plavaka transposase
  ------ inclusion threshold ------
       0.79   10.3   4.6        0.2   12.2   0.7    2.2  2  zf-C2H2   Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.0   0.0  3.8e-127  3.4e-123       1     324 []     193     525 ..     193     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: 411.0 bits;  conditional E-value: 3.8e-127
     Plavaka   1 FknakeLlktiDslpsgdpewkseevkvegel.eeeepkwmkeeyelwfrdplevikellgnpdfadeldyaPereytdekkgervysemmtgdwaweq 98 
                 F+n+++ ++tiD+++ g+++w++++v+++g++ +++ p+wm +ey++wfrdp+ v+++++gnpd+a+++dy P+r +    +++r+y+++m+gdwaweq
  CDO72719.1 193 FANHQHVYATIDAIKLGSIPWQTFSVTYNGPVpDGAMPSWMVREYDVWFRDPRLVLRQQYGNPDYAGDMDYGPKRLFL--GTRKRQYKDFMSGDWAWEQ 289
                 99****************************998999******************************************..6789*************** PP

     Plavaka  99 q..ieekp.tegatlvpvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklk......kikkskefrklfkrqlfHacla 188
                 +  i+e+p  +ga ++  il+sDKTt+sv+tg++e+yP+Yl+ G ++++vrr a+rna++l+++L+ipk++      +++++++frk f+r+lfH++l+
  CDO72719.1 290 AdlIAEDPnMHGAAFCAAILGSDKTTVSVATGQNEYYPLYLTNGSVTNSVRR-AHRNAITLIGFLAIPKTTsvsaerHYQNDESFRK-FRRELFHTSLR 386
                 **88888779******************************************.**************98742333336789999999.*********** PP

     Plavaka 189 rilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlvacivqgwCpkctakkkelgdleeselrtreetlelleeaadelkklwkeyglk... 284
                 +il+pL+e +++ +++ cadgh+rrv+++l++yiaDypEqvl+ac+vqgwCp+c ak+++l++ e+ ++r++++t+++ ++a+d +++lw++yg++   
  CDO72719.1 387 AILDPLRESMSTYEIVPCADGHYRRVVFGLGPYIADYPEQVLLACTVQGWCPRCIAKPDQLDTGEA-ARRSHKHTEAV-RDAKD-MRQLWNDYGIVlti 482
                 **************************************************************9755.77777775555.99988.9********98422 PP

     Plavaka 285 ...gviepFwedlpradihelltpDlLHqlikgvfkdHlvkWv 324
                    + ++pF++ +pradihell+pDlLHq+ikg fkdHlv+Wv
  CDO72719.1 483 lcmSLHQPFTAYFPRADIHELLSPDLLHQVIKGSFKDHLVTWV 525
                 2224689***********************************8 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   2.3e-05       0.2       2      23 .]      19      45 ..      18      45 .. 0.89
   2 ?   -3.6   0.2         2   1.8e+04       5      16 ..     436     447 ..     431     447 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                EET....TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  2 kCp....dCgksFkrksnLkrHirt.H 23
                +Cp    +C++ F++ s L+rHi+  H
  CDO72719.1 19 PCPysakGCHRLFSDHSGLTRHINAaH 45
                58888889***************9877 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
                 TTTEEESSHHHH CS
     zf-C2H2   5 dCgksFkrksnL 16 
                  C+++   +++L
  CDO72719.1 436 WCPRCIAKPDQL 447
                 799988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 6837.87
//
Query:       CDO72720.1  [L=768]
Description: hypothetical protein BN946_scf184990.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.52   10.3   3.2        1.6    8.8   0.2    2.8  3  COX4      Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.033   5.8e+02      13      42 ..     217     249 ..     210     277 .. 0.76
   2 ?   -1.7   0.0      0.15   2.7e+03      74     126 ..     384     433 ..     369     435 .. 0.67
   3 ?    8.8   0.2   8.7e-05       1.6      39      63 ..     455     479 ..     453     528 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.033
        COX4  13 wenplpdirfreqseeikaLkekekgdWk.....e 42 
                 w +p+p  ++  ++++ ++L++   +dW+      
  CDO72720.1 217 WLFPSP--AHSRKKQKTTQLRAAFVQDWEqvledR 249
                 556667..888889999***********9555552 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.15
        COX4  74 lggvlillglslllfllirlfvagpvpkTlskewqeaqlermldlkinpitGl 126
                 +  ++ + ++sl+ + ++ +     + +T  k++ +  + +++++++ +i ++
  CDO72720.1 384 VTSAATVTAASLVKVTTMASS---SKSRTQRKDHSSTATGKTPKSRMSDIASI 433
                 444444444444444444444...88999999999999999999999999876 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 8.7e-05
        COX4  39 dWkeLsleEkkalyrisFgqtlpem 63 
                 +W+eL+l E ++l r +Fg +l++ 
  CDO72720.1 455 PWQELTLAELQQLHRKAFGSELSKQ 479
                 8******************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5304.16
//
Query:       CDO72721.1  [L=136]
Description: hypothetical protein BN946_scf184990.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 930.15
//
Query:       CDO72722.1  [L=427]
Description: hypothetical protein BN946_scf184990.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1252  (0.069831); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 2799.02
//
Query:       CDO72723.1  [L=377]
Description: hypothetical protein BN946_scf184990.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-10   41.2   0.0    2.7e-10   40.3   0.0    1.5  1  GHMP_kinases_N  GHMP kinases N terminal domain
     0.0064   16.8   0.1      0.047   14.1   0.1    2.3  2  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0     3e-14   2.7e-10       2      66 .]     115     175 ..     114     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 3e-14
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHH...HHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerla...qggngsggDvaasvyGg 66 
                     i++++eiP g+GLGSS+A++ a+v+  ++l        +l l  erl      ++ ++++v+a++ Gg
      CDO72723.1 115 IHCDNEIPFGRGLGSSGAAVIAGVLLGNELG-------ELNLPVERLLdfaLMVERHPDNVTAALVGG 175
                     99*****************************.......5666666655444334479*******9998 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   1.9e+03      25      43 ..     140     158 ..     121     162 .. 0.68
   2 !   14.1   0.1   5.2e-06     0.047      24      75 ..     297     345 ..     275     355 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
  GHMP_kinases_C  25 lkavvgilppeleelleal 43 
                     l +++g+l+  +e+ll+++
      CDO72723.1 140 LGNELGELNLPVERLLDFA 158
                     4457888999999999887 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.2e-06
  GHMP_kinases_C  24 elkavvgilppeleellealselG...algaklsGaGgGptvfalfkdkdeaeqv 75 
                     ++  +++ l p l e+ + +   +    lg +lsGa  Gpt+ al+    + e++
      CDO72723.1 297 QP--YRKTLIPGLPEVTNNITPSThpgLLGICLSGA--GPTILALA--TGGFEAI 345
                     55..56666666666655554333444*********..*******9..4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:01.13
# Mc/sec: 1009.65
//
Query:       CDO72724.1  [L=3455]
Description: hypothetical protein BN946_scf184990.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-128  427.1   0.0   3.1e-127  424.1   0.0    2.7  2  AAA_6           Hydrolytic ATP binding site of dynein motor r
   8.1e-117  390.7   7.5   8.1e-117  390.7   7.5    3.4  3  DHC_N2          Dynein heavy chain, N-terminal region 2
    1.2e-74  250.1   0.4    1.2e-74  250.1   0.4    5.0  6  AAA_9           ATP-binding dynein motor region
      1e-68  231.5   0.0    5.6e-68  229.1   0.0    2.3  2  AAA_8           P-loop containing dynein motor region D4
    9.5e-51  172.8   0.0    3.2e-50  171.1   0.0    2.0  1  Dynein_C        Dynein heavy chain C-terminal domain
    4.3e-43  146.9   0.0    4.7e-37  127.2   0.0    4.7  4  AAA_7           P-loop containing dynein motor region
    7.7e-42  143.5   7.1    1.3e-41  142.8   7.1    1.3  1  MT              Microtubule-binding stalk of dynein motor
    6.6e-37  126.9   0.0    1.4e-36  125.8   0.0    1.6  1  AAA_lid_11      Dynein heavy chain AAA lid domain
    3.3e-30  104.6   0.0      1e-28   99.8   0.0    3.2  2  Dynein_heavy    Dynein heavy chain region D6 P-loop domain
    3.1e-27   95.3   0.0      2e-10   40.8   0.0    6.6  5  AAA_5           AAA domain (dynein-related subfamily)
    1.6e-16   60.6   0.0      1e-15   58.0   0.0    2.6  1  Dynein_AAA_lid  Dynein heavy chain AAA lid domain
    8.7e-13   48.8   0.2     0.0021   18.5   0.0    5.0  4  AAA             ATPase family associated with various cellula
    1.8e-12   47.7   0.0      0.006   16.9   0.0    5.3  4  AAA_22          AAA domain
    6.8e-11   42.5   1.9       0.14   12.3   0.0    5.9  6  AAA_33          AAA domain
    1.5e-08   35.2   0.0       0.61   10.5   0.0    6.3  5  AAA_16          AAA ATPase domain
    4.5e-08   33.7   1.3      0.068   13.7   0.0    6.0  4  AAA_18          AAA domain
    5.7e-07   29.1   0.0       0.26   10.6   0.0    4.6  4  FtsK_SpoIIIE    FtsK/SpoIIIE family
    9.3e-06   24.9   0.0      0.018   14.1   0.0    3.7  3  T2SSE           Type II/IV secretion system protein
    1.7e-05   24.3   2.0       0.65    9.3   0.0    3.8  3  Mg_chelatase    Magnesium chelatase, subunit ChlI
      4e-05   23.3   0.1       0.74    9.6   0.0    3.6  3  AAA_29          P-loop containing region of AAA domain
    0.00019   21.6   2.7    0.00051   20.2   0.0    3.0  2  AAA_lid_1       AAA+ lid domain
    0.00035   20.9   0.3       0.31   11.4   0.0    4.3  4  AAA_19          AAA domain
    0.00048   19.9   0.2         26    4.5   0.0    4.6  4  AAA_30          AAA domain
    0.00069   19.7   0.0        2.1    8.4   0.0    3.6  3  AAA_14          AAA domain
    0.00073   19.3   0.6       0.73    9.5   0.0    4.3  4  IstB_IS21       IstB-like ATP binding protein
     0.0013   19.1   0.0        5.5    7.4   0.0    4.7  4  RNA_helicase    RNA helicase
     0.0015   18.5   0.1         24    4.8   0.0    4.9  5  Rad17           Rad17 P-loop domain
      0.009   15.9   0.0        4.6    7.0   0.0    2.7  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      0.009   16.5   5.1         12    6.4   0.0    4.8  3  ABC_tran        ABC transporter
  ------ inclusion threshold ------
       0.01   16.0   0.9       0.03   14.6   0.9    1.8  1  UPF0489         UPF0489 domain
      0.013   15.2   0.9         22    4.7   0.0    4.2  4  AAA_24          AAA domain
      0.022   14.3   0.0       0.63    9.6   0.0    3.1  2  AAA_25          AAA domain
      0.052   13.5   0.7         39    4.1   0.1    4.7  3  NACHT           NACHT domain
       0.11   12.9   0.1       0.95    9.9   0.0    2.3  2  Lipocalin_8     Lipocalin-like domain
       0.13   12.0   0.0        3.2    7.5   0.0    2.9  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
        0.5   10.4  23.1       0.73    9.9   2.6    3.0  2  UPF0242         Uncharacterised protein family (UPF0242) N-te
        3.1    7.5  16.4        1.3    8.8   0.0    4.4  4  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.1   0.0  6.4e-130  3.1e-127       1     327 []     708    1055 ..     708    1055 .. 0.94
   2 ?   -2.4   0.0       3.6   1.7e+03      35      49 ..    1421    1435 ..    1394    1467 .. 0.59

  Alignments for each domain:
  == domain 1  score: 424.1 bits;  conditional E-value: 6.4e-130
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  Yg+eYlg+ +rLv+TpltdrcyltltqAl+ +lgg+p GpagtGKtE+vk L+ +l+++v+vf c++++d++++g+if Gl+q+GaWgCfdeFnr+e
  CDO72724.1  708 YGWEYLGVPDRLVQTPLTDRCYLTLTQALDHQLGGSPFGPAGTGKTESVKALGVQLGRFVLVFCCDETFDFQAMGRIFVGLCQVGAWGCFDEFNRLE 804 
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalke....kkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelak 190 
                   ++LS+v+qq+++iqq l++     ++++++ gk++klnk++gifit+np+yagr++LP nL +lfRp+am+ Pd elIa++mLfs+Gf++a++la+
  CDO72724.1  805 ERILSAVSQQVQSIQQGLASlvknPNTEIELVGKNVKLNKNMGIFITTNPNYAGRSQLPPNLTKLFRPMAMTRPDRELIAQVMLFSQGFRTAESLAS 901 
                  ***************98765111156789999***************************************************************** PP

       AAA_6  191 klvtlykllseqlskqdhydfglralksvlkaagelkre......epees..............eeelllralrdvnlpklvaeDvplfkglisdlF 267 
                  k+v +++l++eqls q hydfglralk+vl  ag lkre      +   s              e+++l+++++++ +pklva+Dvpl+++l++d+F
  CDO72724.1  902 KIVPFFNLCDEQLSPQPHYDFGLRALKAVLASAGILKRErlqesrS---SgeddaaaglsdaasEQVILIQSVTETIVPKLVADDVPLLTSLLADVF 995 
                  *************************************984443330...03333444444445599******************************* PP

       AAA_6  268 pgvelpesdyeeleeaieevlkekklqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  pgv+   ++ ++l+++i++v++e++l   e++++k++qly+++k++hg+m+vG++gsgK+
  CDO72724.1  996 PGVDYVPVNLDALRQQISKVCAERRLIEGERWINKILQLYQIQKIQHGLMMVGPSGSGKS 1055
                  ***********************************************************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.6
       AAA_6   35 gapaGpagtGKtEtv 49  
                    + Gp g GKt t 
  CDO72724.1 1421 LMLCGPPGSGKTMTL 1435
                  344566666666665 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.5       6.8   3.3e+03     148     215 ..      79     139 ..      66     150 .. 0.52
   2 !  390.7   7.5  1.7e-119  8.1e-117       3     395 ..     164     563 ..     162     565 .. 0.96
   3 ?   -0.8   1.6       1.3   6.2e+02      34      83 ..    2234    2287 ..    2207    2330 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.8
                 HHHHHHTS---EEEE-SSS.TEEE...THHHHHHHHHHHHHHHHTCSSSTT..THHHHHHHHHHHHHHH CS
      DHC_N2 148 kieeewkelefelteykdsgvfilkg.vdeiielledhivklqsmksspyvkpfeeeveewekklsrlq 215
                  i+e+ + l++++++ +    +i+++ +++ii++ e+      +m++   +    ++++ +e kl+r+q
  CDO72724.1  79 SIQEQLAGLQLKIVAED----KIVENkINDIIQEWEQTRPVQGNMRADTAL----NTINVFEGKLTRVQ 139
                 45555555555555543....233333555555555555555555555444....34555555555555 PP

  == domain 2  score: 390.7 bits;  conditional E-value: 1.7e-119
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   3 eikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalkewevakelkekieefkevlplieelrnpalrerHwkelsel 101
                  + +el++lk +w+++s +++++ e  ++p++++++++l++++++ll++ k +p +++++ +++++++ ++ ++++ +li+el+++al++rHwk+l++ 
  CDO72724.1 164 PVFEELRDLKAVWTALSGVWSQIGELREMPWATVQPRKLRQQLDSLLSSTKDMPTRMRQYAAFEYVQDVLRGLLKSNSLISELKSEALKDRHWKQLFKV 262
                 57799********************************************************************************************** PP

                 X..XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHHHHTCSSSTT. CS
      DHC_N2 102 lgvikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivklqsmksspyvk 198
                 l+v  ++ s   +tlg++ +++l   e+ i+e++ +A++E++le+ +++++e+w++++++l++y+++ +++++g+d++++++++++++l++mk spy+k
  CDO72724.1 263 LRV-PSQVSLPLMTLGHVYDMDLrkNENIIKEVIIQAQGEMALEEYIRQVKETWTNYTLDLVNYQNK-CRLIRGWDDLFNKCSENLNSLSAMKLSPYYK 359
                 *85.44566667***********755999***********************************988.******************************9 PP

                 .THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TH.HHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHHHHHHHHH CS
      DHC_N2 199 pfeeeveewekklsrlqeildewlkvQrkWlyLepifsse.dirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelneqlekiqk 296
                  feee+ +we+kl+r++ ++d+w++vQr+W+yLe+ifss+ di++ lp e++rF+++++e+  +mk+v+k+p vl++ +++g++++le+l ++l+kiqk
  CDO72724.1 360 VFEEEAGAWEEKLNRIHVLFDVWIDVQRQWVYLEGIFSSSaDIKHLLPVESARFQNINTEFLAVMKKVYKSPFVLDVLNIQGIQKSLERLADLLNKIQK 458
                 9**************************************55*******************************9****99******************** PP

                 HHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE......EEEEEETTS-EEEEE.......E.EEEHHHHHHHHHHHHH CS
      DHC_N2 297 sLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee.kkeitgmiskegEkvelse.....argnveeWLneleeemkkt 389
                 +L eyLe++R++fpRFyF++d++Llei+++sk++ ++++hlkk+F gi++l ++e  ++i gm s+egE+v +++        ++ +WL++le+em+ +
  CDO72724.1 459 ALGEYLERERASFPRFYFVGDEDLLEIIGNSKEILRIMKHLKKMFAGISTLLLDEeLTQIQGMASREGEEVYFKDpillkDYPKINDWLSKLEAEMRVS 557
                 *****************************************************998999**************989997633489************** PP

                 HHHHHH CS
      DHC_N2 390 lkellk 395
                 l +ll 
  CDO72724.1 558 LAQLLC 563
                 *99975 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
                  XXX..XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX.XXXXXX CS
      DHC_N2   34 kel..dveeleeevkellkklkklpkalke.wevakelkekieefke.vlplie 83  
                  +e+  +ve l++ev++l+ ++++ +++ +    +++el+++ie +ke +  li+
  CDO72724.1 2234 SEIldKVEPLRNEVQSLEDQAEQTKQQAQMmVTMIAELEASIERYKEeYAGLIR 2287
                  333444444444444444444333332222344444555555554442222333 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.9   1.9e+03      33      72 ..     580     617 ..     580     666 .. 0.73
   2 ?   -1.1   0.0       1.7   8.2e+02      24      52 ..    1863    1895 ..    1855    1904 .. 0.74
   3 ?   -2.1   0.6       3.6   1.7e+03     157     185 ..    2045    2073 ..    2033    2081 .. 0.86
   4 ?   -2.0   0.6       3.3   1.6e+03     160     211 ..    2076    2130 ..    2067    2136 .. 0.72
   5 !  250.1   0.4   2.6e-77   1.2e-74       2     220 .]    2392    2611 ..    2391    2611 .. 0.98
   6 ?   -2.3   0.0       4.2     2e+03     108     132 ..    2940    2963 ..    2912    2970 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.9
                 SSTTHHHHHHH......HEESTTSTTHHHHHHHHHHTTSE CS
       AAA_9  33 PqgqankwiknkekeklkviklsdkkflktLenairfGkp 72 
                 Pq q ++w++++   +l ++ ++   ++ ++e+a+++ ++
  CDO72724.1 580 PQDQFMAWLEKY-PAQLVTLAMQ-VAWTASVEEALENSQS 617
                 99999****996.4445444444.3688888888777665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
                  .....SSEEEEESSSTTHHHHHHH......HEE CS
       AAA_9   24 s....erwPlliDPqgqankwiknkekeklkvi 52  
                  +    +r  l++D +++  +w  ++ +++l+v+
  CDO72724.1 1863 CkegsQRDGLMLDSHEELYRWFTQQVAKNLHVV 1895
                  233458999***************977777754 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.6
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9  157 vkkerpeleekkeeliqeeaenkkqlkel 185 
                  v++ r++l  k+++l  ++ae +++lk++
  CDO72724.1 2045 VEELRKSLAIKRTQLEAKNAEANEKLKRM 2073
                  7788999****************999975 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.3
                  HHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHSSSSSSTHHHHHHHHH CS
       AAA_9  160 erpeleekkeeliqeea...enkkqlkeledklLeeLseaegniLedeelietLe 211 
                  +++e e+kk + i+ +a   e+ k++k+  + ++  L++ae  +Le ++ +++++
  CDO72724.1 2076 DQQEAEQKKAASIEIQAalvEQDKNIKQRREIVMADLADAEPAVLEAQAAVSSIK 2130
                  4667777777777766612245666777777899************999988876 PP

  == domain 5  score: 250.1 bits;  conditional E-value: 2.6e-77
                  HHH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE. CS
       AAA_9    2 eWnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknk.ekeklkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikk 97  
                  +W+++ LPsD+l++eNai++++ +r+Pl+iDP+gqa++++ n+ +++k++v+++ d+ flk Le+a+rfG++lli+dv e+ldpiL+pvL++ei ++
  CDO72724.1 2392 SWQSKSLPSDNLCTENAIMIKRYSRYPLIIDPTGQATTFLLNEyKDKKITVTSFLDEAFLKVLESALRFGNTLLIQDV-EHLDPILNPVLNREIRRT 2487
                  6*****************************************989999******************************.*****************7 PP

                  ..CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   98 g.rkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLeeL 193 
                  g r li+lg+++i++s++F ++l t+++++++sp+i+++vt++nFt+t+++L++q L++v+k erp+ e+k+++l++ + e++ +l++le+ lL+ L
  CDO72724.1 2488 GgRVLIRLGSQDIDFSPSFTMFLSTRDPSVEFSPDICSRVTFVNFTMTRSSLQSQSLDQVLKVERPDTERKRTDLMKMQGEFRLRLRTLEKLLLQAL 2584
                  55*********************************************************************************************** PP

                  HHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  194 seaegniLedeelietLeksKktaeei 220 
                  +e++gniL+d+++i+tLe+ K++a+ei
  CDO72724.1 2585 NESSGNILDDDKVINTLETLKREAAEI 2611
                  ************************998 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 4.2
                  .EE--SSCEEEEEESSTTSHHHHHH CS
       AAA_9  108 eieysenFrLylttklsnphyspei 132 
                  ++  + nFrL+lt  ++np+++ +i
  CDO72724.1 2940 TLLPHRNFRLFLTM-EANPSIPVNI 2963
                  4445899***9975.5677777666 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.6   1.7e+03      16      40 ..    1034    1057 ..    1025    1065 .. 0.67
   2 !  229.1   0.0   1.2e-70   5.6e-68       2     260 .]    1738    2016 ..    1737    2016 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.6
       AAA_8   16 ilRvlrqprghaLlvGvgGsGrqsl 40  
                  ++ + +++ g +++vG  GsG+   
  CDO72724.1 1034 LYQIQKIQHG-LMMVGPSGSGKSNA 1057
                  4444444444.789********865 PP

  == domain 2  score: 229.1 bits;  conditional E-value: 1.2e-70
       AAA_8    2 dLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiieesf 98  
                   Lvlf+d+++h++ri Rv rq +gh+Ll+Gv GsG+ +l++  a +++l++fqi+v++ky+ ++f+edl+++l++ag+k+++++f+++++++++  f
  CDO72724.1 1738 PLVLFNDVLDHVLRIDRVFRQVQGHLLLIGVSGSGKTTLSRFVAWMNGLSIFQIKVHNKYTGDDFDEDLRTVLRRAGCKGEKICFIMDESNVLDSGF 1834
                  69*********************************************************************************************** PP

       AAA_8   99 ledinnlLntGevpnLfskeekeeiieelrkeakkq.gvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  le +n+lL++ evp Lf+ +e +++++++++  +++  + ds+e+l++ f+++v +nLh+v++m+p  + + sr+ + p+L n +++dwf  W ++a
  CDO72724.1 1835 LERMNTLLANAEVPGLFEGDEHAALMTACKEGSQRDgLMLDSHEELYRWFTQQVAKNLHVVFTMNPPENGLASRAATSPALFNRCVLDWFGDWSDQA 1931
                  ******************************998888556789******************************************************* PP

       AAA_8  195 LleVaekvl....................eeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktykkl 260 
                  + +V+ ++                     + +  ++ +++ ++v++lv+vh+s++++++++ ++  r++yvtp++yl++++ y +l
  CDO72724.1 1932 FYQVGMEFTntldldlpsynpppmfpiayR-DLAMPPTHRAAVVNALVHVHQSMHQINQRLSRRQGRYNYVTPRHYLDFINHYVRL 2016
                  ********9666666666666666665533.6999999999******************************************987 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.0   6.6e-53   3.2e-50       3     305 ..    3160    3451 ..    3158    3453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 6.6e-53
                  HHHHHHHHHHHCCCTTT----.......---..CCH.....--------------..----..........-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Dynein_C    3 eteellstllslqpressssg.......sggssree.....kvlelaadileklpelfdleeaekkpteyeeplntvllqElerfnkLleeirrsLk 87  
                  +++ell +l +++  ++++ +        +g+++++      ++e + ++l++lp++f++    k++ ++++pl + +++E +  +kLl ++rr+L 
  CDO72724.1 3160 QGNELLGKLRKMRMLADDDDEatpaagpAQGQASQQpawmrHLYERCGEWLQQLPANFHTL--AKQSADHQDPLYRLFFREGNIGSKLLMQVRRDLA 3254
                  78999999998877766333356777774444444567888**************965444..3446899*************************** PP

                  HHHC---------HHHHHHHHHHHHTS--GGG.-----SS--HHHHHHHHHHHHHHHHHHH.---.....B-GGGSS-HHHHHHHHHHHHHHHTT-- CS
    Dynein_C   88 elqkaikGevvmseeleelansllngkvPesWakksypslkplgsWvrdLleRvkqlqkwl.eeegkPkvfwLsgfffPqaFLtavlqnyarknkip 183 
                  ++ k+++Ge++++++l++l++sl +g++P++W++ ++ ++  +++W++++ +R++ql++++  ++ +   +wL+g+ffP+a++ta++q +a++++++
  CDO72724.1 3255 DVVKVCQGELKQTNHLRTLMSSLTKGTIPDHWRRYKVHKTMGVSEWIANFARRLAQLDQIAgLDNLNNVEVWLGGLFFPEAYITATRQAVAHRKRWS 3351
                  ********************************8889999999*******************655433455*************************** PP

                  ---EE--EE---.............-EE.E-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS.....EEEEEESSTT--SE..... CS
    Dynein_C  184 ideltfefevtkkekeeeaeeepedGvy.ihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkkkyecPvYktseRrgvlstth 279 
                  +++l +++++ k  +        + G++ + GL leGa+w  ++ vL++ e    + +l + ++++v+++++   +  +++PvY + +R++v     
  CDO72724.1 3352 LETLRLQLDIEKV-N--------DPGAFiVDGLVLEGASWAGDRLVLNDGE----TVRLGPSQIRWVQSEEAV-PN-AVNLPVYLNGDRNDV----- 3428
                  **********954.3........359998***********99999999988....678999*****9887773.44.3***********998..... PP

                  ....EEEEEE.....-B.HHHTTT-EE CS
    Dynein_C  280 stnfvfsvdLptkkpee.hwilrgval 305 
                      +f+vdLp +++    +  r v+l
  CDO72724.1 3429 ----MFTVDLPFDNSAGaLVSTRAVCL 3451
                  ....99****99977543455555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.1        50      13      54 ..     719     760 ..     713     772 .. 0.86
   2 !    6.8   0.0    0.0092       4.5      29      58 ..    1037    1066 ..    1028    1072 .. 0.85
   3 !  127.2   0.0   9.8e-40   4.7e-37       7     178 ..    1392    1566 ..    1387    1569 .. 0.91
   4 ?    2.8   0.0      0.15        73      31      51 ..    1758    1778 ..    1746    1811 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
       AAA_7  13 lVptvdtvrysyllelllknkkpvllvGptGtGKtviikdll 54 
                 lV+t  t r+   l++ l+++      Gp+GtGKt  +k l 
  CDO72724.1 719 LVQTPLTDRCYLTLTQALDHQLGGSPFGPAGTGKTESVKALG 760
                 79999999999999999999999999*********9998765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0092
       AAA_7   29 llknkkpvllvGptGtGKtviikdllkkld 58  
                  + k ++ +++vGp+G+GK+   + ll +l+
  CDO72724.1 1037 IQKIQHGLMMVGPSGSGKSNAWQVLLAALE 1066
                  5577899*************9999988876 PP

  == domain 3  score: 127.2 bits;  conditional E-value: 9.8e-40
       AAA_7    7 akfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrk...gvygPp.gg 99  
                  +  s+++Vptvdtvr + +l   l+++kp++l+Gp G+GKt+++ + l+kl+  ++ ++ +nfs+ t+++ + +++e++ e r+     ++ P+  g
  CDO72724.1 1392 VTASDVVVPTVDTVRHEEVLYSWLSEHKPLMLCGPPGSGKTMTLFSALRKLP--DMEVVGLNFSSATTPELILKTFEQYCEYRKTpngVILAPAqIG 1486
                  67899***********************************************..99*************************9986442445554368 PP

       AAA_7  100 kklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgg.grneitpRllrhfnvlai 178 
                  + lvvF D++n+pa +kyg+q  i ++Rql++ gg++ ++++ + +++ +q+v+a++pp   gr ++++R+lrh  ++ +
  CDO72724.1 1487 RWLVVFCDEINLPATDKYGTQRVISFIRQLVESGGYWRTTDMAWVKLERIQFVGACNPPTDpGRVPLSHRFLRHAPLVMV 1566
                  99*******************************************************997549***********877765 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.15
       AAA_7   31 knkkpvllvGptGtGKtviik 51  
                  + + ++ll+G +G+GKt++ +
  CDO72724.1 1758 QVQGHLLLIGVSGSGKTTLSR 1778
                  557799***********9865 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   7.1   2.7e-44   1.3e-41       3     340 ..    2031    2363 ..    2029    2367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 2.7e-44
          MT    3 lengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqealn 99  
                  l  gl kl+ t +qv++l+  la++ ++l+ kn +a++ ++ +  + +   ++ka + e +  +    k++k+++     dla aepa+l aq+a+ 
  CDO72724.1 2031 LHVGLDKLRETVEQVEELRKSLAIKRTQLEAKNAEANEKLKRMVADQQEAEQKKAASIEIQAALVEQDKNIKQRREIVMADLADAEPAVLEAQAAVS 2127
                  778******************************99987776666666666777776655555555556889999999******************** PP

          MT  100 tlnktnltelksfgsppdavvnvaaavmvllaprgkvpkdrswkaakivmakvdafldslinfdkenihenclkai..keylndpefepefiksksl 194 
                  +++++ l e++++  pp+av     +v  ll       k  sw++ + ++   d f++ ++nfd  n   + l+ +  +++l+ p ++ e ++  s 
  CDO72724.1 2128 SIKRQHLQEVRTMANPPEAVKLAMESVCTLLGH-----KIDSWRTVQGIIR-RDDFIQRIVNFDTTNQMTKQLRELmkRDFLSRPSYNFETVQRASK 2218
                  ********************9999999999864.....5579***998876.588*********9987777766543468***************** PP

          MT  195 aaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrlvgglas 291 
                  a++ l  wvi  vrf e+   vep r  ++  +++ ++++++  ++ + iael+a + +   ++     +    + e e  +  +  + +l+  l+s
  CDO72724.1 2219 ACGPLVKWVIAQVRFSEILDKVEPLRNEVQSLEDQAEQTKQQAQMMVTMIAELEASIERYKEEYAGLIRETEAIKAEMERVESKVDRSMKLLESLSS 2315
                  *************************************999999**********************9999999999999******************* PP

          MT  292 envrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlw 340 
                  e+ rw +  + f ++  t+ gdvll +af++y gff ++yr+ +  + w
  CDO72724.1 2316 EKTRWEDGSRTFDTEMGTIVGDVLLSAAFLAYAGFFDQQYREMM-WQEW 2363
                  ****************************************9754.3445 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   2.8e-39   1.4e-36       1     164 []    2979    3152 ..    2979    3152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2.8e-39
                  HHHHHHHHCT.-HHHHT..........HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSS.......GGS-HHHHHH CS
  AAA_lid_11    1 kanllraysn.esekideeffeekeeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyee.......kevpwealky 89  
                  kanl +++++  s       +++  +e  +l+f L++fHavvqeR ++ plGw+ +Y+Fn+sd+ +++++++++l+++++       +++pw+a+++
  CDO72724.1 2979 KANLSDSLRSiAS-----ARLTQGPAEKARLYFLLAWFHAVVQERLRYVPLGWSKTYDFNDSDMAAAFNTIDTWLNSVAKgranvdpASIPWDAIRT 3070
                  7888888866333.....33444678899***********************************************99999**************** PP

                  HHHHTTTSTT--SHHHHHHHHHHHHHHSSGGGGSTT.....-....T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   90 ligeinYGGrvtDdwDrrllktyleeffseevleeeyk...s....geykipeeksleeyleyieslpladspevfglhena 164 
                  li++ +YGGrv  d+D+++++++++ +f++ +++ ++    s    +  ++p+ ++l+++l+++++lp+ ++p+++ l + a
  CDO72724.1 3071 LIKQSVYGGRVDSDFDQKIIDAFVDGLFTPAAYNVDFDlvpSaagsQVLTVPDGTKLDHFLSWVQQLPDREPPSWLSLPPTA 3152
                  *********************************999555542444467888*************************998865 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.3   6.2e+02      32     103 ..    2438    2522 ..    2420    2532 .. 0.72
   2 !   99.8   0.0   2.1e-31     1e-28       2     119 .]    2862    2978 ..    2861    2978 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
                    EEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHH.HHHHH..................HHTT-EEEE.EEES-TTS-HH CS
  Dynein_heavy   32 ksvslGqgqeeeaekalekaakegsWvlLqNchlapswlk.eLekileel...........eeklhssfRlwl.tsepspkfPis 103 
                    k++++ +  +e   k+le+a + g+ +l+q++  +   l+  L++ ++++           + + ++sf ++l t +ps +f  +
    CDO72724.1 2438 KKITVTSFLDEAFLKVLESALRFGNTLLIQDVEHLDPILNpVLNREIRRTggrvlirlgsqDIDFSPSFTMFLsTRDPSVEFSPD 2522
                    5677777777788899***************977755555488888665566667777765667788999999555666667655 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 2.1e-31
                    TTS-EEEEE-TT--THHHHHHHHHHTT--EEEEETTSHHHH.HHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH.......HHTT-EEEEEEE CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakklkklvksvslGqgqee.eaekalekaakegsWvlLqNchlapswlkeLekileeleeklhssfRlwltse 95  
                    p+tP+ ++  pg+d++ ++e+l ++++  ++sv++G++++   a++a+  aa++gsWvlL+N+hlapswl +Lek l+  +   h++fRl+lt+e
    CDO72724.1 2862 PATPLALVSVPGYDASYRVENLVQNTGSRCTSVAMGSQEGFtLADQAVALAARQGSWVLLKNVHLAPSWLGQLEKKLQ--TLLPHRNFRLFLTME 2954
                    78************************9999********99869*********************************98..567799********* PP

                    S-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   96 pspkfPislLqssikvtnepPkgl 119 
                     +p++P+++L++s  ++nepP g+
    CDO72724.1 2955 ANPSIPVNILRQSRILMNEPPPGI 2978
                    *********************986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.056        27      62     138 .]     788     870 ..     745     870 .. 0.65
   2 !   40.8   0.0   4.1e-13     2e-10       2     129 ..    1044    1177 ..    1043    1186 .. 0.90
   3 !   15.1   0.0   3.6e-05     0.017       2     124 ..    1421    1546 ..    1420    1559 .. 0.79
   4 !   24.6   0.0   4.2e-08   2.1e-05       1     137 [.    1762    1918 ..    1762    1919 .. 0.84
   5 ?   -0.4   0.0       2.1     1e+03      50      96 ..    2900    2949 ..    2881    2989 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.056
                 ---G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---................-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  62 aaregeilvlDEveraesevlnsLlslleerrllleeggelvkakndd.ller.........frviatanpldrslnelspalrsRf 138
                  ++ g+  ++DE++r+e  +l+++ +     +  l++   lvk +n++  l           + ++ t+np++ ++++l p+l ++f
  CDO72724.1 788 LCQVGAWGCFDEFNRLEERILSAVSQQVQSIQQGLAS---LVKNPNTEiEL-VgknvklnknMGIFITTNPNYAGRSQLPPNLTKLF 870
                 4567888899999999999998887766655544322...22222222212.12445556669999999999999999999998877 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 4.1e-13
                  EEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--.........--------............G-SEEEEESGGG--HHH CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreikngttslvdsplvraar............egeilvlDEveraesev 81  
                  +++vGp+G+gKs  ++ l+aal        v yv  ++ + ++ l g ++  + t+++ d+ ++   r            + +i+++++v+    e 
  CDO72724.1 1044 LMMVGPSGSGKSNAWQVLLAALerldgIEGVSYVIDPKAMHKDALYGTLD--PTTREWNDGLFTHTLRkivddvrgesnkRHWIIFDGDVDPEWVEN 1138
                  89********************99998788999*****************..6**************************99**********444777 PP

                  HHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.-TT- CS
       AAA_5   82 lnsLlslleerrllleeggelvkaknddllerfrviatanpldrslne 129 
                  ln+L s+l++++ll+ ++ge+ + +++     +r++++ + l+     
  CDO72724.1 1139 LNRLDSVLDDNKLLTLPNGERLNLPPN-----VRIMFEVEHLK----Y 1177
                  7888899*******************8.....99999988877....4 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 3.6e-05
                  EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrll 95  
                  ++L GppG+gK++   + ++ l   ev+  ++++ tt+e ++   e   + ++  ++++   a+  +  +++ DE++   ++  ++  ++++  r l
  CDO72724.1 1421 LMLCGPPGSGKTMTLFSALRKLpDMEVVGLNFSSATTPELILKTFEQYCEYRKTPNGVILAPAQigRWLVVFCDEINLPATDKYGTQ-RVISFIRQL 1516
                  89************999999999*********************9976777777888888888844445888999998888888887.777777777 PP

                  ..-SSSEEE---.......-EEEEEESS-- CS
       AAA_5   96 leeggelvkakndd.llerfrviatanpld 124 
                  +e+gg     +     ler+++++++np+ 
  CDO72724.1 1517 VESGGYWRTTDMAWvKLERIQFVGACNPPT 1546
                  777776666666666677788888888876 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 4.2e-08
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-S..EEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraarege..ilvlDEveraesevlnsLlslleerrll 95  
                  ++lL+G +G+gK++l++ +a + + +++ +  + ++t +d+   ++           +l ra+ +ge   +++DE + ++s  l+++++ll + +++
  CDO72724.1 1762 HLLLIGVSGSGKTTLSRFVAWMNGLSIFQIKVHNKYTGDDFDEDLR----------TVLRRAGCKGEkiCFIMDESNVLDSGFLERMNTLLANAEVP 1848
                  79********************************************..........69999999554114456**********************99 PP

                  ..-SSSEEE---...................................-EEEEEESS--....-TT-TTHHHHTT CS
       AAA_5   96 leeggelvkaknddller.............................frviatanpld...rslnelspalrsR 137 
                      g +  a   +   +                             ++v++t+np++    s++  spal  R
  CDO72724.1 1849 GLFEGDEHAALM-T---AckegsqrdglmldsheelyrwftqqvaknLHVVFTMNPPEnglASRAATSPALFNR 1918
                  333222222222.2...23357999*********************************8777777778888777 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 2.1
                  .......--------G-SEEEEESGGG--HHHHH....HHHHHHHSSEEE. CS
       AAA_5   50 gttslvdsplvraaregeilvlDEveraesevln....sLlslleerrlll 96  
                  ++  l d+++  aar+g+ ++l  v+ + +++l+    +L++ll +r ++l
  CDO72724.1 2900 EGFTLADQAVALAARQGSWVLLKNVH-LAPSWLGqlekKLQTLLPHRNFRL 2949
                  55667788888899999999999998.666666511114566666666553 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.1e-18     1e-15       1     128 [.    1251    1379 ..    1251    1380 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2.1e-18
  Dynein_AAA_lid    1 leelfe..klvepclefvrkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldedsrekf 91  
                      le +fe  +l+ ++l+++ + +++i+++t ++++++l++l+++ ++++ e++  ++d +l++e +e++++k +l  ++W++ +    + r+++
      CDO72724.1 1251 LEPFFEegELIMSALQYA-ETIEHIMDFTTTRALNTLFSLINKTVRNVIEYNIHHSDFPLSHERIEQYVTKRLLVNIIWAFSGDARLELRAEL 1342
                      5778888899********.************************************************************************** PP

  Dynein_AAA_lid   92 deflrelleealklp..peegtvyDyffdketgkWkpWe 128 
                       +flr+     ++lp  ++ g++ Dy +++++g+W  W+
      CDO72724.1 1343 GDFLRKHTG--VDLPplNQGGSLLDYDVQVSNGEWSGWQ 1379
                      *********..9***999********************8 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0094       4.5       4      35 ..     745     776 ..     744     854 .. 0.83
   2 ?   -0.5   0.0       3.3   1.6e+03       2      22 ..    1045    1065 ..    1044    1127 .. 0.82
   3 !   15.5   0.0   3.7e-05     0.018       1      74 [.    1421    1503 ..    1421    1561 .. 0.63
   4 !   18.5   0.0   4.4e-06    0.0021       1      67 [.    1763    1827 ..    1763    1848 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0094
                 ESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA   4 yGppGtGKTllakavakelgvefleisgsell 35 
                 +Gp GtGKT  +ka+  +lg+ +l + + e +
  CDO72724.1 745 FGPAGTGKTESVKALGVQLGRFVLVFCCDETF 776
                 6******************9988888777766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.3
                  EEESSTTSSHHHHHHHHHHHH CS
         AAA    2 llyGppGtGKTllakavakel 22  
                  +++Gp G GK+ + + +   l
  CDO72724.1 1045 MMVGPSGSGKSNAWQVLLAAL 1065
                  789*******99888877765 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 3.7e-05
                  EEEESSTTSSHHHHHHHHHHHH.THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..............TSEEEEEETGGGHHHHH CS
         AAA    1 vllyGppGtGKTllakavakel.gvefleisgsellskyvgesekkirelfkeakeka..............kpsilfiDEidalaksr 74  
                  ++l+GppG GKT++  +  ++l ++e++ ++ s+ +      +++ i ++f++  e +              +  ++f DEi   a+++
  CDO72724.1 1421 LMLCGPPGSGKTMTLFSALRKLpDMEVVGLNFSSAT------TPELILKTFEQYCEYRktpngvilapaqigRWLVVFCDEINLPATDK 1503
                  589************999999865888888888888......66666666666533333334555656666345889999988777777 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 4.4e-06
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEi 67  
                  +ll+G  G GKT+l + va   g ++++i++++    +  +  +++r ++++a  k ++ ++++DE 
  CDO72724.1 1763 LLLIGVSGSGKTTLSRFVAWMNGLSIFQIKVHNKY--TGDDFDEDLRTVLRRAGCKGEKICFIMDES 1827
                  69****************************99888..778899*********977776799999995 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.029        14      11      47 ..     745     772 ..     737     817 .. 0.87
   2 ?    3.2   0.0       0.2        98       8      38 ..    1044    1083 ..    1040    1124 .. 0.68
   3 !   16.9   0.0   1.2e-05     0.006       6      60 ..    1419    1465 ..    1415    1479 .. 0.90
   4 !   14.0   0.0   9.4e-05     0.046       4      69 ..    1759    1815 ..    1756    1900 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.029
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaeeerpevvfvtl 47 
                 +G++GtGKT +++ l  ql         ++ v+ +++
  CDO72724.1 745 FGPAGTGKTESVKALGVQL---------GRFVLVFCC 772
                 7*************99998.........666666555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.2
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaee.........e 38  
                  l+ +G+sG+GK+   + ll  l++   +e          +
  CDO72724.1 1044 LMMVGPSGSGKSNAWQVLLAALERLDGIEGvsyvidpkaM 1083
                  5679********9999999888654444445555544443 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.2e-05
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60  
                  + l+++G++G+GKT++l   l++l+        + evv  + +s t+++ +l+ +
  CDO72724.1 1419 KPLMLCGPPGSGKTMTLFSALRKLP--------DMEVVGLNFSSATTPELILKTF 1465
                  6789********************8........***************9998876 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 9.4e-05
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelk 69  
                   +g+l+++G sG+GKTtl r ++  +         + +++ +++ ++ + +d+ ++l   l + + 
  CDO72724.1 1759 VQGHLLLIGVSGSGKTTLSRFVAWMN---------GLSIFQIKVHNKYTGDDFDEDLRTVLRRAGC 1815
                  689***************99998887.........7777777777777777777666665555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.1   5.3e+02       6      27 ..     746     768 ..     745     821 .. 0.93
   2 !   12.3   0.0   0.00028      0.14       2      53 ..    1044    1104 ..    1044    1142 .. 0.76
   3 !   11.4   0.0   0.00057      0.28       2      29 ..    1421    1449 ..    1421    1470 .. 0.90
   4 !   10.9   0.0   0.00079      0.38       3      21 ..    1764    1782 ..    1763    1814 .. 0.87
   5 ?   -1.5   0.0       5.2   2.5e+03      94     131 ..    1970    2004 ..    1959    2016 .. 0.73
   6 ?   -2.3   0.1       9.2   4.5e+03      22      92 ..    2027    2077 ..    2010    2127 .. 0.44

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.1
      AAA_33   6 GlpGsGKstlaerllkklg.avl 27 
                 G++G+GK+  ++ l  +lg +vl
  CDO72724.1 746 GPAGTGKTESVKALGVQLGrFVL 768
                 9***********99889986555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00028
      AAA_33    2 vllvGlpGsGKstlaerllkklg........avllssdtlrr.rlfgtdqqsktdytrvld 53  
                  +++vG++GsGKs   + ll++l          ++++  ++++ +l+gt +++++++++ l+
  CDO72724.1 1044 LMMVGPSGSGKSNAWQVLLAALErldgiegvSYVIDPKAMHKdALYGTLDPTTREWNDGLF 1104
                  59****************9999888899988888999999998999998888877666433 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00057
      AAA_33    2 vllvGlpGsGKstlaerllkklg.avlls 29  
                  ++l+G+pGsGK+  + + l+kl+ ++++ 
  CDO72724.1 1421 LMLCGPPGSGKTMTLFSALRKLPdMEVVG 1449
                  599************99999*99988875 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00079
      AAA_33    3 llvGlpGsGKstlaerllk 21  
                  ll+G++GsGK+tl++ ++ 
  CDO72724.1 1764 LLIGVSGSGKTTLSRFVAW 1782
                  79************99875 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 5.2
      AAA_33   94 rlgvpvrivvvetdeetlkeRlakRaangddrsevpee 131 
                  r+ v  ++v+v+ +  ++++Rl +R+ + +    v+ +
  CDO72724.1 1970 RAAVVNALVHVHQSMHQINQRLSRRQGRYN---YVTPR 2004
                  566667899****************99744...35555 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 9.2
      AAA_33   22 klgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat.....nlsr.rerarflkla 92  
                  ++   ++  d+lr++++                           + + ++++ +  t     n+++ ++ +r+++  
  CDO72724.1 2027 QQRHLHVGLDKLRETVEQ--------------------------VEELRKSLAIKRTqleakNAEAnEKLKRMVADQ 2077
                  333444444444444444..........................444444444444422211222111112222222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.33   1.6e+02      31      63 ..     746     775 ..     731     874 .. 0.71
   2 ?    5.0   0.0     0.061        30       7      51 ..    1026    1068 ..    1020    1125 .. 0.72
   3 ?    6.5   0.0      0.02       9.8      25      89 ..    1419    1480 ..    1406    1521 .. 0.65
   4 !   10.5   0.0    0.0012      0.61      17      42 ..    1753    1778 ..    1744    1782 .. 0.79
   5 ?    1.0   0.0         1   4.8e+02     117     164 ..    1800    1847 ..    1790    1851 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.33
      AAA_16  31 GesGvGKsslvrellralekdggiflrgkcdql 63 
                 G++G+GK+  v++l  +l +    +l   cd+ 
  CDO72724.1 746 GPAGTGKTESVKALGVQLGRF---VLVFCCDET 775
                 9**********9998766654...455555544 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.061
      AAA_16    7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51  
                  + ++++l++++  + +  + ++ +G+sG+GKs   + ll ale+ 
  CDO72724.1 1026 RWINKILQLYQIQKIQ--HGLMMVGPSGSGKSNAWQVLLAALERL 1068
                  5566777777733333..678899********9999999776654 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.02
      AAA_16   25 elvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqllde....a 89  
                    ++l G++G+GK+  + ++lr l +    g  f ++++ +l        +++++ + ++++  +++    +
  CDO72724.1 1419 KPLMLCGPPGSGKTMTLFSALRKLPDMevvGLNFSSATTPEL--------ILKTF-E-QYCEYRKTPngviL 1480
                  458899***********8888888877333333355555555........66766.4.67776666655554 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.0012
      AAA_16   17 ervrsgrpelvllsGesGvGKsslvr 42  
                  +rv ++  + +ll+G sG+GK++l r
  CDO72724.1 1753 DRVFRQVQGHLLLIGVSGSGKTTLSR 1778
                  4677777799*************976 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 1
      AAA_16  117 srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164 
                   ++ e l+  l+++ ++++++ +++D+   +d++ l+ + +Ll+++e 
  CDO72724.1 1800 DDFDEDLRTVLRRAGCKGEKICFIMDESNVLDSGFLERMNTLLANAEV 1847
                  578999****************************99999999988775 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.51   2.5e+02       5      22 ..     746     763 ..     745     846 .. 0.67
   2 ?    2.1   0.0      0.56   2.7e+02       4      80 ..    1047    1128 ..    1045    1154 .. 0.60
   3 !    8.1   0.0    0.0078       3.8       2      44 ..    1422    1468 ..    1421    1484 .. 0.76
   4 !   13.7   0.0   0.00014     0.068       2      49 ..    1764    1807 ..    1763    1894 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.51
      AAA_18   5 GtpGvGKttlakeLskrl 22 
                 G++G+GKt+  k+L   l
  CDO72724.1 746 GPAGTGKTESVKALGVQL 763
                 9************96665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.56
      AAA_18    4 tGtpGvGKttlakeLskrlgf........gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvid 80  
                   G++G+GK+   + L   l+          v+  +   ++ l+ + dp   + ++ l ++ l k++d +++ s    + +++++d
  CDO72724.1 1047 VGPSGSGKSNAWQVLLAALERldgiegvsYVIDPKAMHKDALYGTLDPTTREWNDGLFTHTLRKIVDDVRGES---NKRHWIIFD 1128
                  69*********99994444223544777433333333333444444444333344444444444555554443...355555555 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0078
      AAA_18    2 lltGtpGvGKt.tlakeLskrlgf...gvnlrdvakenglllevdpe 44  
                  +l+G+pG+GKt tl  +L+k+  +   g n ++  + + +l +++++
  CDO72724.1 1422 MLCGPPGSGKTmTLFSALRKLPDMevvGLNFSSATTPELILKTFEQY 1468
                  69********9688888877647777888888877777777777666 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 0.00014
      AAA_18    2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdes 49  
                  ll G++G+GKttl++ ++ ++  g  + ++  +n +  ++++e  d  
  CDO72724.1 1764 LLIGVSGSGKTTLSRFVAWMN--GLSIFQIKVHNKYTGDDFDE--DLR 1807
                  689*****************9..66666666666666666666..222 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.89   4.3e+02     103     223 ..     541     655 ..     533     667 .. 0.76
   2 !    9.0   0.0    0.0017      0.82      34      80 ..    1036    1081 ..    1021    1090 .. 0.69
   3 ?    1.9   0.0      0.24   1.2e+02      29      56 ..    1409    1435 ..    1390    1440 .. 0.80
   4 !   10.6   0.0   0.00053      0.26      12      55 ..    1731    1776 ..    1723    1779 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.89
                   HHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-........................-----------B--.---EEEE CS
  FtsK_SpoIIIE 103 eralraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaene..ritsLsnqgpsygvhvlvtagrele.krpslvv 196
                    ++   l +L++em+   a +  + v +++++ g i ++p+d f    + +     l ++ +   +t+ +++     v+ ++++ + le ++ ++++
    CDO72724.1 541 PKINDWLSKLEAEMRVSLAQLLCDAVTELQSVYGAISPVPQDQF----MAW-----L-EKYPaqLVTLAMQVAWTASVEEALENSQSLEgPLDTIRQ 627
                   56777889999999999999999999999999999999999954....444.....3.33335455666666778889999999999999******* PP

                   EEC-HHHHHHHHHHH.....HHHHHHHH CS
  FtsK_SpoIIIE 197 ivderieLrlaapkds.svlvedaivRl 223
                   ++d +++  l+  k   ++  e +i++l
    CDO72724.1 628 GLDLLADVVLTELKPVtRRKCEHLITEL 655
                   ********99987765455555555555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0017
                    EGGGS-.S.EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT CS
  FtsK_SpoIIIE   34 dlkkmash.llvaGatgsGKStalntLilSlatthtPeeVqliliDyk 80  
                    +++k   h l+ +G +gsGKS+a ++L+++l      e V+ ++iD+k
    CDO72724.1 1036 QIQKIQ-HgLMMVGPSGSGKSNAWQVLLAALERLDGIEGVS-YVIDPK 1081
                    334444.516789***************9986665555555.556666 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.24
                    -EEEEEGGGS-.SEEEE--TTSSHHHHH CS
  FtsK_SpoIIIE   29 nplvldlkkmashllvaGatgsGKStal 56  
                    ++l++ l+++   l+++G +gsGK+ +l
    CDO72724.1 1409 EVLYSWLSEHK-PLMLCGPPGSGKTMTL 1435
                    55566667777.79***********987 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00053
                    HT---TTEEEEEEETTS-EEEEEGGGS-...SEEEE--TTSSHHHH CS
  FtsK_SpoIIIE   12 rtessqlpvalgkeisgnplvldlkkma..shllvaGatgsGKSta 55  
                     +e+  +p+ l+ ++ +++l +d +     +hll++G +gsGK+t 
    CDO72724.1 1731 YEEELDVPLVLFNDVLDHVLRIDRVFRQvqGHLLLIGVSGSGKTTL 1776
                    5566678999*************9877777**************95 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.24   1.1e+02     106     155 ..    1019    1067 ..    1001    1084 .. 0.67
   2 !   14.1   0.0   3.7e-05     0.018     100     156 ..    1389    1445 ..    1368    1450 .. 0.88
   3 ?    3.9   0.0     0.048        23     118     146 ..    1752    1777 ..    1718    1785 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.24
       T2SSE  106 ddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155 
                  + l+  e+  +ki ++ +   + +  +++ G+ gsGK+    +ll+ ++ 
  CDO72724.1 1019 RRLIEGERWINKILQLYQIQ-KIQHGLMMVGPSGSGKSNAWQVLLAALER 1067
                  55555555555665555544.334455666********998888887765 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.7e-05
       T2SSE  100 akeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                  ++++t +d+++   ++ + +evl + ++e++ +++ G+ gsGKt +l ++l ++++ 
  CDO72724.1 1389 SHAVTASDVVVPTVDTVRHEEVLYSWLSEHKPLMLCGPPGSGKTMTLFSALRKLPDM 1445
                  55677788888888889999*******************************999876 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.048
       T2SSE  118 iaevlrkavrerglilvsGgTgsGKttll 146 
                  i++v r+    +g +l+ G  gsGKttl 
  CDO72724.1 1752 IDRVFRQV---QGHLLLIGVSGSGKTTLS 1777
                  66777777...9***************85 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.004       1.9      22      49 ..    1041    1068 ..    1022    1079 .. 0.81
   2 !    9.3   0.0    0.0013      0.65      24      49 ..    1420    1445 ..    1412    1455 .. 0.79
   3 ?    3.8   0.0     0.065        32      24      41 ..    1762    1779 ..    1755    1787 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
  Mg_chelatase   22 gHnlllvGppGsGKtmlakrlpsllppl 49  
                    +H l++vGp+GsGK+   + l + l +l
    CDO72724.1 1041 QHGLMMVGPSGSGKSNAWQVLLAALERL 1068
                    7*************98777766655554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0013
  Mg_chelatase   24 nlllvGppGsGKtmlakrlpsllppl 49  
                     l+l+GppGsGKtm        lp++
    CDO72724.1 1420 PLMLCGPPGSGKTMTLFSALRKLPDM 1445
                    4899**********766555556665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.065
  Mg_chelatase   24 nlllvGppGsGKtmlakr 41  
                    +lll+G +GsGKt l + 
    CDO72724.1 1762 HLLLIGVSGSGKTTLSRF 1779
                    89************9875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.011       5.2      22      37 ..    1042    1056 ..    1032    1067 .. 0.77
   2 ?    1.7   0.0      0.44   2.1e+02      25      41 ..    1421    1438 ..    1413    1444 .. 0.77
   3 !    9.6   0.0    0.0015      0.74      21      38 ..    1759    1776 ..    1749    1777 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
      AAA_29   22 kgatlltGpsGsGKST 37  
                  +g  +++GpsGsGKS 
  CDO72724.1 1042 HG-LMMVGPSGSGKSN 1056
                  45.899*********5 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.44
      AAA_29   25 tlltGpsGsGKS.TllDA 41  
                   +l Gp GsGK+ Tl+ A
  CDO72724.1 1421 LMLCGPPGSGKTmTLFSA 1438
                  689********8566655 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0015
      AAA_29   21 lkgatlltGpsGsGKSTl 38  
                  ++g  ll+G sGsGK+Tl
  CDO72724.1 1759 VQGHLLLIGVSGSGKTTL 1776
                  46789************8 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-06   0.00051      17      80 ..    1614    1678 ..    1601    1697 .. 0.77
   2 ?   -1.6   0.6       6.5   3.2e+03      21      46 ..    2652    2677 ..    2642    2686 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-06
   AAA_lid_1   17 lptaikfhyvfnlrdlsnifqgllfss..aevlkapldlirlylheservygdkmveekdlellek 80  
                  + t ++ hyv+  r+l+   +g+  +    e+  +   l+r++ he+ r+++d++v e++    + 
  CDO72724.1 1614 FTTDVQAHYVYSPRELTRWVRGIYEAIrpLEI-LSVEGLVRVWAHEALRLFQDRLVTEEEKRWTDE 1678
                  5799******************9765411344.46779******************9988765554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.5
   AAA_lid_1   21 ikfhyvfnlrdlsnifqgllfssaev 46  
                  +   y f lr + +if+ +l+ ++++
  CDO72724.1 2652 VNHFYQFSLRFFLDIFDYILHHNPNL 2677
                  567899*************9988765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       3.1   1.5e+03      17      29 ..     746     758 ..     745     765 .. 0.85
   2 ?   -0.8   0.0       3.5   1.7e+03      13      40 ..    1044    1071 ..    1035    1078 .. 0.77
   3 !   11.4   0.0   0.00063      0.31       8      40 ..    1416    1448 ..    1409    1459 .. 0.83
   4 ?    2.6   0.0      0.32   1.5e+02       9      26 ..    1759    1776 ..    1753    1791 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.1
      AAA_19  17 aGpGtGKTrvlkh 29 
                 +++GtGKT+ +k+
  CDO72724.1 746 GPAGTGKTESVKA 758
                 899*****99876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.5
      AAA_19   13 llvtaGpGtGKTrvlkhivallvelggv 40  
                  l+++++ G+GK+   +  +a l++l g+
  CDO72724.1 1044 LMMVGPSGSGKSNAWQVLLAALERLDGI 1071
                  4567999******999999999888765 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00063
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhivallvelggv 40  
                  +++k+l++ ++pG+GKT +l  +++ l +++ v
  CDO72724.1 1416 SEHKPLMLCGPPGSGKTMTLFSALRKLPDMEVV 1448
                  5789****************9999988777655 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.32
      AAA_19    9 kekvllvtaGpGtGKTrv 26  
                   +++ll+++  G+GKT++
  CDO72724.1 1759 VQGHLLLIGVSGSGKTTL 1776
                  57899***********85 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4       0.1        50      25      38 ..     746     759 ..     739     764 .. 0.91
   2 ?    3.1   0.0      0.14        67      22      46 ..    1045    1070 ..    1036    1126 .. 0.85
   3 ?    4.5   0.0     0.053        26      19      38 ..    1419    1438 ..    1409    1462 .. 0.70
   4 ?    1.5   0.0      0.43   2.1e+02      20      36 ..    1762    1778 ..    1752    1784 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.1
      AAA_30  25 GpAGtGKttalkal 38 
                 GpAGtGKt ++kal
  CDO72724.1 746 GPAGTGKTESVKAL 759
                 9*********9987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
      AAA_30   22 vltGpAGtGKttalkalreaweaa.g 46  
                  +++Gp G+GK+ a ++l +a+e+  g
  CDO72724.1 1045 MMVGPSGSGKSNAWQVLLAALERLdG 1070
                  689**************999998755 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.053
      AAA_30   19 rvavltGpAGtGKttalkal 38  
                  +  +l Gp+G+GKt++l ++
  CDO72724.1 1419 KPLMLCGPPGSGKTMTLFSA 1438
                  566889********988554 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.43
      AAA_30   20 vavltGpAGtGKttalk 36  
                    +l G+ G+GKtt+ +
  CDO72724.1 1762 HLLLIGVSGSGKTTLSR 1778
                  57899*********866 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.014         7       2      74 ..    1418    1497 ..    1417    1524 .. 0.68
   2 !    8.4   0.0    0.0043       2.1       5      75 ..    1763    1829 ..    1760    1853 .. 0.77
   3 ?   -2.4   0.0       9.4   4.6e+03      79     119 ..    2876    2917 ..    2849    2922 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke..........ekktylflDEiq 74  
                  +k+l++ G+  +GKT+ l+  +++l   + +++ +n+ + ++ +l  + ++++++  + ++           +  ++f DEi 
  CDO72724.1 1418 HKPLMLCGPPGSGKTMTLFSALRKLP--DMEVVGLNFSSATTPELILK-TFEQYCEYRKTPngvilapaqiGRWLVVFCDEIN 1497
                  68999*****************9877..89999999999887543322.2333333322223344444544455566777775 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0043
      AAA_14    5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqe 75  
                  l++ G+  +GKTtl + ++  +     si+ i++ ++ + +  d+ +l +++++   k+ +k ++++DE   
  CDO72724.1 1763 LLLIGVSGSGKTTLSRFVAWMNG---LSIFQIKVHNKYTGDDFDE-DLRTVLRRAgCKG-EKICFIMDESNV 1829
                  6899**********877765544...8999999999888665544.5666666665566.99*******765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 9.4
      AAA_14   79 wekalkslvdeg.knldvivtGSnskllskeiatslagrvae 119 
                  ++  + +lv+++ +++  ++ GS+ ++ + + a  la r+ +
  CDO72724.1 2876 ASYRVENLVQNTgSRCTSVAMGSQEGFTLADQAVALAARQGS 2917
                  55556778886669999***********99999999988765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2       1.1   5.1e+02      53      70 ..     745     762 ..     740     767 .. 0.91
   2 ?    2.6   0.0      0.21     1e+02      33      61 ..    1026    1055 ..    1016    1070 .. 0.79
   3 !    9.5   0.0    0.0015      0.73      41      62 ..    1412    1433 ..    1398    1447 .. 0.88
   4 ?   -0.5   0.0       1.8   8.8e+02      48      64 ..    1761    1777 ..    1751    1793 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.1
   IstB_IS21  53 lGpsGvGKshlaialgve 70 
                 +Gp+G+GK+    algv+
  CDO72724.1 745 FGPAGTGKTESVKALGVQ 762
                 6**************998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.21
   IstB_IS21   33 rkvkeLatlsfiek.kenivllGpsGvGKs 61  
                  r ++++ +l  i+k +++++++GpsG GKs
  CDO72724.1 1026 RWINKILQLYQIQKiQHGLMMVGPSGSGKS 1055
                  56677777777766356899*********9 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0015
   IstB_IS21   41 lsfiekkenivllGpsGvGKsh 62  
                   s++++++ ++l+Gp+G GK+ 
  CDO72724.1 1412 YSWLSEHKPLMLCGPPGSGKTM 1433
                  58******************95 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.8
   IstB_IS21   48 enivllGpsGvGKshla 64  
                    ++l+G sG GK+ l+
  CDO72724.1 1761 GHLLLIGVSGSGKTTLS 1777
                  5689**********986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       1.1   5.5e+02       4      23 ..     745     764 ..     744     789 .. 0.89
   2 ?    7.4   0.0     0.011       5.5       2      58 ..    1045    1115 ..    1044    1127 .. 0.65
   3 ?    2.5   0.0      0.38   1.8e+02       2      17 ..    1422    1437 ..    1421    1456 .. 0.83
   4 ?    0.9   0.0       1.2     6e+02       2      21 ..    1764    1783 ..    1763    1850 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.1
  RNA_helicase   4 yGpsgeGKStlakeLakall 23 
                   +Gp+g+GK+  +k L  +l 
    CDO72724.1 745 FGPAGTGKTESVKALGVQLG 764
                   6************9987765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.011
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkkl............klkkkdsvys.rnpeddfw.dgYt.gqevvvidDf 58  
                    +++Gpsg GKS++ + L +al++ l            k  +kd +y    p++  w dg   +    ++dD+
    CDO72724.1 1045 MMVGPSGSGKSNAWQVLLAALER-LdgiegvsyvidpKAMHKDALYGtLDPTTREWnDGLFtHTLRKIVDDV 1115
                    789*************9999983.224466667777756666666655444444442554325555566665 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.38
  RNA_helicase    2 wlyGpsgeGKStlake 17  
                    +l+Gp+g GK+++  +
    CDO72724.1 1422 MLCGPPGSGKTMTLFS 1437
                    79*********98766 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 1.2
  RNA_helicase    2 wlyGpsgeGKStlakeLaka 21  
                    +l G sg GK+tl++ +a  
    CDO72724.1 1764 LLIGVSGSGKTTLSRFVAWM 1783
                    68899********9985544 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.7   1.8e+03       3      37 ..     581     614 ..     579     622 .. 0.81
   2 ?   -1.9   0.0       5.7   2.7e+03      52      70 ..     746     764 ..     745     769 .. 0.88
   3 ?    4.4   0.0     0.065        31      46      65 ..    1042    1061 ..    1015    1075 .. 0.75
   4 ?    4.8   0.0     0.049        24      44      62 ..    1417    1435 ..    1401    1453 .. 0.82
   5 ?    1.5   0.0      0.49   2.4e+02      42      75 ..    1757    1790 ..    1743    1811 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.7
       Rad17   3 edenelWfekykPekaeelavhkkkieevkewlka 37 
                 +d++  W+eky P ++  la+       v+e+l+ 
  CDO72724.1 581 QDQFMAWLEKY-PAQLVTLAMQVAWTASVEEALEN 614
                 68999******.78888999999999999999864 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.7
       Rad17  52 GPsGCgkstvvkvLskelg 70 
                 GP+G gk+  vk L  +lg
  CDO72724.1 746 GPAGTGKTESVKALGVQLG 764
                 9************987776 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.065
       Rad17   46 riLLisGPsGCgkstvvkvL 65  
                  + L++ GPsG gks + +vL
  CDO72724.1 1042 HGLMMVGPSGSGKSNAWQVL 1061
                  258999**********9998 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.049
       Rad17   44 kkriLLisGPsGCgkstvv 62  
                  +++ L+++GP+G gk+ ++
  CDO72724.1 1417 EHKPLMLCGPPGSGKTMTL 1435
                  46789**********9775 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.49
       Rad17   42 srkkriLLisGPsGCgkstvvkvLskelgiklre 75  
                  ++ +  LL+ G sG gk+t  + ++   g ++ +
  CDO72724.1 1757 RQVQGHLLLIGVSGSGKTTLSRFVAWMNGLSIFQ 1790
                  5555579999*********999888887777655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0094       4.6       4      63 ..    1046    1092 ..    1044    1170 .. 0.65
   2 ?    6.0   0.0     0.019       9.3       3      26 ..    1764    1791 ..    1763    1826 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0094
      AAA_21    4 liGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeie 63  
                  ++Gp gsGKSn  + l  +             l +  gi ++++ +d+++  +++ +++ 
  CDO72724.1 1046 MVGPSGSGKSNAWQVLLAA-------------LERLDGIEGVSYVIDPKAMHKDALYGTL 1092
                  79**********9999443.............4566666677777777766666666665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.019
      AAA_21    3 vliGpNgsGKSnLLdaldllarl....d 26  
                  +liG  gsGK++L +   ++ +l    +
  CDO72724.1 1764 LLIGVSGSGKTTLSRFVAWMNGLsifqI 1791
                  69**************999977655440 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.058        28      14      35 ..    1044    1065 ..    1038    1087 .. 0.83
   2 ?    3.1   0.0      0.27   1.3e+02       9      34 ..    1416    1442 ..    1413    1460 .. 0.81
   3 ?    6.4   0.0     0.025        12      14      32 ..    1763    1781 ..    1758    1849 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.058
                  EEEEESTTSSHHHHHHHHTTSS CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKStLlkllagll 35  
                  + +vG++G+GKS   ++l+  l
  CDO72724.1 1044 LMMVGPSGSGKSNAWQVLLAAL 1065
                  579*********9888877655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.27
                  ETTSEEEEEESTTSSHH.HHHHHHTTS CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxx RF
    ABC_tran    9 kegekvaivGenGaGKS.tLlkllagl 34  
                  +e + + + G+ G+GK+ tL+++l +l
  CDO72724.1 1416 SEHKPLMLCGPPGSGKTmTLFSALRKL 1442
                  56677899*********6777777766 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.025
                  EEEEESTTSSHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKStLlklla 32  
                  + ++G +G+GK+tL + +a
  CDO72724.1 1763 LLLIGVSGSGKTTLSRFVA 1781
                  679***********88765 PP

>> UPF0489  UPF0489 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.9   6.2e-05      0.03      37     152 ..    1962    2085 ..    1959    2119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-05
     UPF0489   37 Dllipkkmsaddvfnallkil.ekl..aeelleelsidnwIlpavyaghisrvvwikpawaqqitegrkellvgkdres...irvdsted...yfls 124 
                  Dl++p  +    v+nal+++   +    ++l++     n++ p  y   i++ v +++++++ ++e++ +l+vg d+ +    +v++ ++   +   
  CDO72724.1 1962 DLAMP-PTHRAAVVNALVHVHqSMHqiNQRLSRRQGRYNYVTPRHYLDFINHYVRLHNEKREELEEQQRHLHVGLDKLRetvEQVEELRKslaIKRT 2057
                  99999.77888999**999997777999999999999*************************************77666335333332220002222 PP

     UPF0489  125 dllyvpeeeleelkqlelevleveeasl 152 
                  +l++ + e++e+lk++  +  e+e+++ 
  CDO72724.1 2058 QLEAKNAEANEKLKRMVADQQEAEQKKA 2085
                  2233334444444444444444444443 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.39   1.9e+02       8      32 ..     745     773 ..     744     803 .. 0.81
   2 ?   -2.1   0.0       5.5   2.6e+03       6      17 ..    1045    1056 ..    1043    1061 .. 0.86
   3 ?    4.7   0.0     0.045        22       5      23 ..    1421    1442 ..    1417    1467 .. 0.80
   4 ?    3.5   0.1       0.1        51       5      19 ..    1763    1777 ..    1761    1783 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.39
      AAA_24   8 yGpsgiGKTtlakel....gpkplfidte 32 
                 +Gp+g+GKT ++k l    g  +l++ ++
  CDO72724.1 745 FGPAGTGKTESVKALgvqlGRFVLVFCCD 773
                 6************9977755555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.5
      AAA_24    6 liyGpsgiGKTt 17  
                  +++Gpsg+GK+ 
  CDO72724.1 1045 MMVGPSGSGKSN 1056
                  789*******95 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.045
      AAA_24    5 iliyGpsgiGKTtlakel...g 23  
                  +++ Gp+g+GKT+++ ++    
  CDO72724.1 1421 LMLCGPPGSGKTMTLFSAlrkL 1442
                  7899*********999885554 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.1
      AAA_24    5 iliyGpsgiGKTtla 19  
                  +l++G sg+GKTtl 
  CDO72724.1 1763 LLLIGVSGSGKTTLS 1777
                  689**********86 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0013      0.63      24      53 ..    1409    1438 ..    1400    1464 .. 0.89
   2 ?    0.2   0.0         1   4.9e+02      36      50 ..    1763    1777 ..    1752    1846 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
      AAA_25   24 wlvkgllpagelallaGapgtGKttlaldl 53  
                   ++  +l +++  +l+G+pg+GKt+ + + 
  CDO72724.1 1409 EVLYSWLSEHKPLMLCGPPGSGKTMTLFSA 1438
                  56788********************98775 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
      AAA_25   36 allaGapgtGKttla 50  
                   ll+G +g+GKttl 
  CDO72724.1 1763 LLLIGVSGSGKTTLS 1777
                  689999******973 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.3   6.3e+02       4      28 ..    1045    1069 ..    1042    1130 .. 0.70
   2 ?    2.7   0.0      0.22   1.1e+02       3      17 ..    1421    1435 ..    1419    1452 .. 0.84
   3 ?    4.1   0.1     0.081        39       3      18 ..    1763    1778 ..    1762    1783 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.3
                  EEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT    4 ilqGeaGsGKTtLlqklalawaegk 28  
                  ++ G++GsGK+   q l  a+ + +
  CDO72724.1 1045 MMVGPSGSGKSNAWQVLLAALERLD 1069
                  689********99888887776655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.22
                  EEEEC-TTTCHHHHH CS
       NACHT    3 vilqGeaGsGKTtLl 17  
                  ++l G++GsGKT+ l
  CDO72724.1 1421 LMLCGPPGSGKTMTL 1435
                  7899********977 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.081
                  EEEEC-TTTCHHHHHH CS
       NACHT    3 vilqGeaGsGKTtLlq 18  
                  ++l G +GsGKTtL +
  CDO72724.1 1763 LLLIGVSGSGKTTLSR 1778
                  5899*********965 PP

>> Lipocalin_8  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     0.002      0.95      38     108 ..    1752    1819 ..    1745    1828 .. 0.90
   2 ?   -0.3   0.1       2.9   1.4e+03      58     115 ..    1988    2046 ..    1972    2061 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.002
  Lipocalin_8   38 eervfwsiqlklievaekqgngetgktlgrfeykgdeltlkdpyvndreegdkkvddtveeLepyGinsle 108 
                    +rvf  +q +l+ +       + ++tl rf +  + l++ +++v+++++gd+  +d ++ L+  G ++ +
   CDO72724.1 1752 IDRVFRQVQGHLLLIGVSG---SGKTTLSRFVAWMNGLSIFQIKVHNKYTGDDFDEDLRTVLRRAGCKGEK 1819
                   5899**********99875...899****************************************998765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.9
  Lipocalin_8   58 ngetgktlgrfeykgde..ltlkdpyvndreegdkkvddtveeLepyGinsleetFevek 115 
                   n+  +   gr++y + +  l   + yv+ ++e++++++++ +   ++G+++l+et e ++
   CDO72724.1 1988 NQRLSRRQGRYNYVTPRhyLDFINHYVRLHNEKREELEEQ-QRHLHVGLDKLRETVEQVE 2046
                   4444555566666665555888888999777888888888.78889******88865333 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.94   4.6e+02      36      48 ..    1421    1433 ..    1415    1455 .. 0.85
   2 ?    7.5   0.0    0.0067       3.2      30      56 ..    1757    1783 ..    1742    1796 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.94
      RuvB_N   36 vllyGpPGlGktt 48  
                  ++l+GpPG Gkt 
  CDO72724.1 1421 LMLCGPPGSGKTM 1433
                  689********94 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0067
      RuvB_N   30 eealdhvllyGpPGlGkttlakiiake 56  
                  ++   h+ll+G  G Gkttl++ +a  
  CDO72724.1 1757 RQVQGHLLLIGVSGSGKTTLSRFVAWM 1783
                  56778*****************99965 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  12.8      0.06        29      88     171 ..    2018    2101 ..    1999    2113 .. 0.71
   2 ?    9.9   2.6    0.0015      0.73      79     146 ..    2238    2309 ..    2209    2320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.06
     UPF0242   88 eealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdq 171 
                  +e+ eel+e++++L+  ld+  e++e+ +e  ++L +k  +  + ++e   +l+  +a +qe  q+ +++ie q + +e+ ++ 
  CDO72724.1 2018 NEKREELEEQQRHLHVGLDKLRETVEQVEELRKSLAIKRTQLEAKNAEANEKLKRMVADQQEAEQKKAASIEIQAALVEQDKNI 2101
                  456677777888888888888888888888888888888888888888777777777777777777777777666655543333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0015
     UPF0242   79 eldeglktkeealeelqeeeeeLkee....ldakeeelerlkeenqqLqekleaiaedfeelkleleeqLae 146 
                  ++ e+l+++ ++le+  e++++ ++     +++ e  +er+kee + L  ++eai++++e++  +++  ++ 
  CDO72724.1 2238 DKVEPLRNEVQSLEDQAEQTKQQAQMmvtmIAELEASIERYKEEYAGLIRETEAIKAEMERVESKVDRSMKL 2309
                  334889999999999999888888887888999999***********************9999888877765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         3   1.4e+03      24      40 ..     746     762 ..     732     774 .. 0.81
   2 ?    8.8   0.0    0.0026       1.3      10      42 ..    1411    1443 ..    1405    1482 .. 0.81
   3 ?   -0.5   8.0       1.7   8.3e+02      92     210 ..    2015    2119 ..    1970    2136 .. 0.45
   4 ?    0.3   0.3         1     5e+02     103     183 ..    2246    2326 ..    2221    2342 .. 0.47

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3
      AAA_11  24 GPPGtgKTktivellsq 40 
                 GP GtgKT  + +l  q
  CDO72724.1 746 GPAGTGKTESVKALGVQ 762
                 9*******998877655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0026
      AAA_11   10 iksalseseitliqGPPGtgKTktivellsqll 42  
                  ++s lse++  ++ GPPG+gKT t+ + l++l 
  CDO72724.1 1411 LYSWLSEHKPLMLCGPPGSGKTMTLFSALRKLP 1443
                  5677888888999*************9999984 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.7
      AAA_11   92 Rvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkk.skekskskleqerrklkkerkelskeleeaees 187 
                  R+ ne+   +e++++ + ++      + +e++++++e++k+l+ ++++l+a+++e++++ +++ +++++++++++ + +++++  e +         
  CDO72724.1 2015 RLHNEK---REELEEQQ-RHLHVGLDKLRETVEQVEELRKSLAIKRTQLEAKNAEANEKLKRMvADQQEAEQKKAASIEIQAALVEQD--------- 2098
                  333333...12222211.1111111111223344444444444444444333333333222220222222333333344444444444......... PP

      AAA_11  188 leeevldeaeivltTlsgagskl 210 
                    +++ ++ eiv++ l+ a  ++
  CDO72724.1 2099 --KNIKQRREIVMADLADAEPAV 2119
                  ..555555555555555554444 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1
      AAA_11  103 avksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek....eklkkskekskskleqerrklkkerkelskelee 183 
                  +v+s+  + ++ k++++ + +++  e+++++e++++e     +e e      ++ +sk +++    + ++ l++e++++++ +++
  CDO72724.1 2246 EVQSLEDQAEQTKQQAQ-MMVTMIAELEASIERYKEEYAGLIRETEAikaeMERVESKVDRS---MKLLESLSSEKTRWEDGSRT 2326
                  44444433333333322.34444444444444444444333333222211122222222222...22334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1400  (0.0780858); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.96u 0.39s 00:00:02.35 Elapsed: 00:00:00.61
# Mc/sec: 17162.32
//
Query:       CDO72725.1  [L=87]
Description: hypothetical protein BN946_scf184990.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-14   53.0   0.3    2.8e-14   52.5   0.3    1.3  1  LSM       LSM domain
     0.0022   17.6   0.2     0.0038   16.8   0.2    1.5  1  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.3   3.1e-18   2.8e-14       7      66 ..      22      84 ..      16      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.1e-18
                TTSEEEEEETTS..EEEEEEEEEEETTSEEEEEEEEEEETTET.EEEEEEEEEEEGGGEEEEE CS
         LSM  7 inkkvtvelkng..relrGtLkgfDqfmNlvLedveetlkdkk.ekrklglvliRGnnivlis 66
                ++ kv++ l ++  ++++Gt++gfD+fmN+v++d+ e+  +     r lg++l++G+ni+li+
  CDO72725.1 22 QRTKVVIWLYDNieMRIEGTIIGFDEFMNVVMDDAAEVYVKDAkPRRELGRILLKGDNITLIQ 84
                45667777777544899******************99887776799***************96 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   4.2e-07    0.0038      11      44 ..      21      56 ..      13      63 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.2e-07
                HCT-EEEEEETTS-..EEEEEEEEE-SSEEEEEETT CS
         Hfq 11 kekipvtifLvnGi..klkGviksfDnftvlLesdg 44
                +++++v+i+L   i  +++G+i +fD+f+ ++ +d+
  CDO72725.1 21 QQRTKVVIWLYDNIemRIEGTIIGFDEFMNVVMDDA 56
                6899******998633789*********96665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 608.72
//
Query:       CDO72726.1  [L=130]
Description: hypothetical protein BN946_scf184990.g9, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-23   82.3   9.2    3.4e-23   81.8   9.2    1.2  1  Romo1     Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   9.2   1.9e-27   3.4e-23       6      65 ..      26      85 ..      21      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 1.9e-27
       Romo1  6 ikmGalmGaaVGlaiGllfGtfsalryglrgrgllrtlgksmlgsaatFGfFmsiGsviR 65
                +kmGa+mGa VGl++G+lfG+fs+lr g+++rg+l tl+++mlgsaatF fF++iGsviR
  CDO72726.1 26 VKMGAIMGAGVGLTMGFLFGSFSILRGGAGPRGVLPTLSQYMLGSAATFSFFLAIGSVIR 85
                8**********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 954.48
//
Query:       CDO72727.1  [L=500]
Description: hypothetical protein BN946_scf184990.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00047   19.8   0.6       0.11   12.4   0.1    3.5  3  TPR_1            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   14.6   1.1      0.042   13.7   0.2    1.9  2  2_5_RNA_ligase2  2'-5' RNA ligase superfamily
       0.34   11.1   4.0        2.7    8.3   0.3    3.1  3  TPR_2            Tetratricopeptide repeat
        1.3    8.7   3.2        4.5    7.0   0.1    2.7  3  TPR_11           TPR repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   2.5e-05      0.11       1      32 [.      11      42 ..      11      42 .. 0.95
   2 ?    1.8   0.0     0.054   2.4e+02      16      30 ..     255     269 ..     252     271 .. 0.84
   3 ?    1.4   0.1     0.073   3.3e+02      17      34 .]     391     408 ..     385     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnP 32
                aka+ +l++a   lgk +e +++ ++AL + P
  CDO72727.1 11 AKAWARLAAASAGLGKRQETVDAWQRALAVLP 42
                89**************************9765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.054
                 -HHHHHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekALel 30 
                 +   Al++y  A+e+
  CDO72727.1 255 DIGAALDFYTSAIEV 269
                 6668*********96 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHSTTH CS
       TPR_1  17 ydeAleyyekALelnPnn 34 
                 ++ A ++y +A  + P++
  CDO72727.1 391 FQAAAAAYMQAADIFPQD 408
                 899**********99985 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   9.5e-06     0.042      72     140 ..      36     109 ..       8     114 .. 0.72
   2 ?   -2.1   0.0      0.73   3.3e+03      81     110 ..     388     417 ..     362     439 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-06
  2_5_RNA_ligase2  72 s.vvylsvsdsealqalraallea.lpeagdkeds...geftPHlTiaqsadstsaaelleklaqalpplefev 140
                      +  + l v++ ++ q+ +++l++  l ea++k ++   g   PH+T++ ++ +++  ++ + ++++lp+ +++ 
       CDO72727.1  36 RaLAVLPVEKLTPAQQKQRDLYSTkLSEAKAKAAEraqGYTPPHITLSVRDEDKPWNRAAKVVQELLPSNTWNS 109
                      5455666666666666677776655555555554466366668********************999**999975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.73
  2_5_RNA_ligase2  81 sealqalraallealpeagdkedsgeftPH 110
                      se++qa  aa ++a    +++++++  + H
       CDO72727.1 388 SESFQAAAAAYMQAADIFPQDDEKHVMHLH 417
                      555555555555555555555443444444 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3   0.00061       2.7       1      32 [.      11      42 ..      11      42 .. 0.94
   2 ?   -4.0   0.0         4   1.8e+04      19      29 ..     258     268 ..     255     268 .. 0.76
   3 ?    3.0   0.2     0.031   1.4e+02      17      34 .]     391     408 ..     384     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00061
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a+a+ +l+ a + lg+ +e ++a+++Al+  P
  CDO72727.1 11 AKAWARLAAASAGLGKRQETVDAWQRALAVLP 42
                79**************************8765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4
       TPR_2  19 eAleafekAle 29 
                  Al+++  A+e
  CDO72727.1 258 AALDFYTSAIE 268
                 58899988876 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.031
       TPR_2  17 yeeAleafekAleldPnn 34 
                 ++ A++a+ +A  + P++
  CDO72727.1 391 FQAAAAAYMQAADIFPQD 408
                 899************986 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.001       4.5      19      41 ..       2      24 ..       1      25 [. 0.88
   2 ?   -4.0   0.0       2.9   1.3e+04      14      22 ..      31      39 ..      28      40 .. 0.79
   3 ?    1.5   0.2     0.052   2.3e+02      10      29 ..     391     410 ..     388     412 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
      TPR_11 19 kAlkldPdnaeayynLGlayykq 41
                +A+k+d ++a a+  L++a + +
  CDO72727.1  2 QAVKIDASYAKAWARLAAASAGL 24
                8***************9996655 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.9
      TPR_11 14 ieaYkkAlk 22
                + a+++Al+
  CDO72727.1 31 VDAWQRALA 39
                568999997 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.052
      TPR_11  10 yeeAieaYkkAlkldPdnae 29 
                 + +A +aY +A ++ P++ e
  CDO72727.1 391 FQAAAAAYMQAADIFPQDDE 410
                 679***********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3870.96
//
Query:       CDO72728.1  [L=448]
Description: hypothetical protein BN946_scf184990.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-66  223.8   5.1    6.3e-47  160.1   2.7    2.0  2  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   2.7   3.5e-51   6.3e-47      10     201 ..      24     217 ..      17     222 .. 0.92
   2 !   64.1   0.0   5.3e-22   9.6e-18     307     398 ..     249     347 ..     247     348 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 3.5e-51
                      HHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-......TTTTSCCGCCTT.CCHHHHHHHHHHHHH CS
  Ammonium_transp  10 vifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign......lglsaagvqdet.lldglfflfqlafaa 96 
                       +++++  a+l++gl+r+k++l++++ +  + avv+++++++Gyslaf+ s   +gfig       +++ a  ++ ++ ++++l+ ++q+ fa+
       CDO72728.1  24 RSTVDPPAAFLYSGLSRRKSALSLVWAVAASNAVVIFQWWFWGYSLAFSPS-ATNGFIGDlrsfalRKVLADPSPGSPlIPELLYSFYQMEFAC 116
                      455578899****************************************99.9*******9998886666665555542577889********* PP

                      HHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTTTSS--GSBH CS
  Ammonium_transp  97 taitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegkeeaikghnl 190
                      ++++i  ga+aer ++ + ++f ++++t+vy+p+a+w+w+ +gw  k+gvl D+Ag++ V + +g++gLa+ + lg+r +r+    +++++hn+
       CDO72728.1 117 VTVAILMGALAERGRVFPAMVFTFIWMTIVYCPIACWAWATNGWGFKWGVL-DYAGGGPVEIASGISGLAYSWALGRRSERE---LRNFRPHNV 206
                      ***************************************************.****************************98...9******** PP

                      HHHHHHHHHHH CS
  Ammonium_transp 191 pfavlGtllLw 201
                      +++ lGt++L 
       CDO72728.1 207 SLVGLGTFILC 217
                      *********96 PP

  == domain 2  score: 64.1 bits;  conditional E-value: 5.3e-22
                      HHHHHHHHHHHHHHHHHHHTSHHHC.....SSHSSTTGGGT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..SB--HHHHHHSHHHHH CS
  Ammonium_transp 307 vvavHgvgGiwGllavgifaaekvv.....askisggllsgegkqlvvqligilvilayafvvtlilllllklllg..LrvseeeeevglDvae 393
                        a H++gG++Gll++++fa++         +  sgg+l+ ++kql++q+++i++++ay+fvvt ++++ l+ +++  Lr ++eee++g+D ae
       CDO72728.1 249 LCAEHAIGGMLGLLFNALFADSAIIaldgvNTSASGGWLNRNWKQLYMQIAYIAACTAYSFVVTALIAKALDRVPTlhLRATPEEEMLGMDDAE 342
                      6788*****************99889**999999***************************************999889*************** PP

                      HSSSS CS
  Ammonium_transp 394 hgeta 398
                      +ge+a
       CDO72728.1 343 IGEFA 347
                      **997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3595.31
//
Query:       CDO72729.1  [L=642]
Description: hypothetical protein BN946_scf184990.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.046   13.2   0.0      0.091   12.2   0.0    1.4  1  DUF3512   Domain of unknown function (DUF3512)


Domain annotation for each model (and alignments):
>> DUF3512  Domain of unknown function (DUF3512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.1e-06     0.091      83     128 ..     291     333 ..     273     335 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-06
     DUF3512  83 tlgslvgkLqeGvttlqgfkedrrnkvtpvkyLnYgpfssyaptyd 128
                 tlg+ v k   G++     +     +v   k+L+Ygp++s+ap++d
  CDO72729.1 291 TLGDYVRKKPLGTARY---RPAPPRRVSCGKFLYYGPYASFAPCFD 333
                 5555555555555554...44444567777899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 4380.44
//
Query:       CDO72730.1  [L=148]
Description: hypothetical protein BN946_scf184990.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-12   47.5   0.4    1.9e-12   46.9   0.4    1.3  1  L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI


Domain annotation for each model (and alignments):
>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.4     1e-16   1.9e-12       2      49 ..      50      97 ..      49      99 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1e-16
                   HHHHTTTTHHHHTT-TTSEEEEEESS-SS-EEEEE-SS--B--EE-SS CS
  L51_S25_CI-B8  2 RkFwrknLprlkykNPavpivvrrrsgdgPallaiYfngrektidlkn 49
                   R +++++  +l+++NP+v++vvrrr +++P+l++ Y n r k+i++k+
     CDO72730.1 50 RTYIHNHIEQLARENPHVEFVVRRRAHREPVLRGFYINNRDKVICVKG 97
                   999*******************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1091.92
//
Query:       CDO72731.1  [L=345]
Description: hypothetical protein BN946_scf184990.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.7   0.1      0.029   14.7   0.1    2.2  2  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-
       0.79    8.8   3.6        1.4    8.0   3.6    1.3  1  Med3      Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.6      0.33     3e+03      34      49 ..       6      21 ..       2      38 .. 0.67
   2 ?   14.7   0.1   3.2e-06     0.029      35      78 ..     222     266 ..     196     270 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
     PBP1_TM 34 dyddeyddeedDdddd 49
                dy d  d  +dD d++
  CDO72731.1  6 DYHDRSDRVWDDWDQQ 21
                6666556666665543 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.2e-06
     PBP1_TM  35 yddeyddeedDdddddeeeevprk..gkkkkpprkkrrwlwllikl 78 
                 ydd+y  + d+ dd+de e+ +r+  +    pp+kk + l+ l+ l
  CDO72731.1 222 YDDDYPRDCDE-DDEDEAEDGSRRasSPMFPPPKKKAKTLGGLLSL 266
                 56655555444.4555555555552334456899999999888876 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.6   0.00016       1.4     118     196 ..     126     204 ..     118     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00016
        Med3 118 LenLsaynkkGkasaskasvvnstpssaastPtttatPgantktaakslpapnatatigtptnsaaaaattatttssqa 196
                 L + ++++  G+ s s+     s  +  ++tPt +  P+ ++++ a+s+++ +++ t  +p++s  ++ ++a+t s + 
  CDO72731.1 126 LKPSTSKSSDGTGSLSGSLRLRSGSALFGQTPTRSLSPERASRKRAASVSSIASSRTKPAPAKSILSSGSSAKTQSPTR 204
                 556689999999999999999999999************************99999******99999999998887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2501.29
//
Query:       CDO72732.1  [L=175]
Description: hypothetical protein BN946_scf184990.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1357.68
//
Query:       CDO72733.1  [L=230]
Description: hypothetical protein BN946_scf184990.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-39  136.4   0.0    1.3e-37  129.6   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   7.3e-42   1.3e-37      45     277 ..       6     210 ..       3     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 7.3e-42
                   HHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-............HHHHHHHHHHHHHT CS
  Aldo_ket_red  45 qseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp...........sieevldaleelvke 130
                    +ee +G+alkk++++re+++++tK+        ++  + +++++l++sl++Lg++yvDl+l+H+p   ++              e+++ +e l  +
    CDO72733.1   6 GNEESVGKALKKASVPREDIFLTTKL--------DQKDHGRVQAALDASLSKLGVNYVDLYLIHWPMAFDEsgktlqpnespTFIETWREMERLLAQ 94 
                   589***********************........888999**************************998889************************* PP

                   TSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHH CS
  Aldo_ket_red 131 GkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknld 227
                   Gk++aiGvSnfs++ l+++++++ v ++++qve +++  l ++ ll +c+kkg+ l ay+plg+  +                              
    CDO72733.1  95 GKAKAIGVSNFSIKTLSALLAHATVVPAVNQVELHPC--LPQHDLLAFCAKKGIILTAYTPLGKHKF-----------------------------A 160
                   *************************************..************************5444.............................4 PP

                   HHHHHHHHHHHTT-..-HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG CS
  Aldo_ket_red 228 aaeelselakehgv..slaqlalryalsqpavgivipgasnieqlednldal 277
                    +++++++a+ hg   + aq+ l++a+  ++++ vip++ +++++++nl + 
    CDO72733.1 161 DDPTIRAIAQAHGAevTSAQVLLSWAV--QRGTAVIPKTLRPSRMKENLTVS 210
                   6789999999998777***********..9******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1762.75
//
Query:       CDO72734.1  [L=289]
Description: hypothetical protein BN946_scf184990.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-90  300.5   0.0    8.8e-90  300.3   0.0    1.0  1  IGPS          Indole-3-glycerol phosphate synthase
     0.0012   18.6   0.1     0.0023   17.7   0.1    1.4  1  QRPTase_C     Quinolinate phosphoribosyl transferase, C-termi
  ------ inclusion threshold ------
      0.026   13.6   0.4      0.039   13.0   0.4    1.3  1  FMN_dh        FMN-dependent dehydrogenase
      0.033   13.6   0.1       0.17   11.3   0.1    2.0  3  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.3   0.0     2e-93   8.8e-90       1     254 []      14     283 ..      14     283 .. 0.95

  Alignments for each domain:
  == domain 1  score: 300.3 bits;  conditional E-value: 2e-93
                 HHHCHHHHHHHHHHHHCCS-G..GCCCCG....-SS-SS-HHHHCHCH......TTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE- CS
        IGPS   1 lekivaekkeevaeakkrqsl..adleaav..klakpkrsfaeaLres......ekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLt 89 
                 l+ki+a+++ +v+ a ++++   ++l+a +   la+   sf+ +L ++      + +l+l+aE+K+aSPskg i+  ++pa++A  y++ gAs+iSVLt
  CDO72734.1  14 LQKIYAQRQRDVEVAIATPGTrpEELDAYLemGLAPALTSFVARLMDNpstgtiSPSLSLMAEIKRASPSKGDIAPFVNPARQALLYAQSGASVISVLT 112
                 79************99999988889998777689***********98876666677899**************************************** PP

                 -CCCC---CCHHHHHHHH-SS-EEE.....ES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEE CS
        IGPS  90 eekyFqGsledLrevrqavslpvlr.....KdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiG 183
                 e+ +F+Gsl d++ vr+a++   +r     K+Fi++eyqi+ear++gad++LLiv++l++e+l++l++++ +lg+e+LvEv++++e++ral++gak++G
  CDO72734.1 113 EPTWFKGSLVDMHLVRRAIDALPNRpavlrKEFIFSEYQIAEARLWGADTVLLIVAMLTQEQLARLYAYSLRLGMEPLVEVNNAAEMQRALEIGAKVVG 211
                 ********************9877777777********************************************************************* PP

                 EESEETTTTEE-CHHHHHHCHCC-.TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHHH CS
        IGPS 184 vNnRnLktlevdlntteeLaklvp.kdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekairel 254
                 vNnRnL++++vd++tt+ L+++v+ +dv+l+a+SGi++++dv+++k++gvna+LvGeslmr++d++++i+el
  CDO72734.1 212 VNNRNLHDFSVDMGTTSGLVDMVReRDVILCALSGIQSSADVQSYKAQGVNAVLVGESLMRAADTKQFIKEL 283
                 ***********************9667*******************************************97 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   5.2e-07    0.0023      84     157 ..     190     269 ..     168     276 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.2e-07
                 EEEESSHHHHHHHHHHT-SEEEEES-.......-HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHH CS
   QRPTase_C  84 evevesleeleevleaeadiimLDnf.......sveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgal 157
                  vev++ +e++++le +a ++ + n        ++ ++   v++++e++  +l   SG  +  +v+ y+ +gv+++ vg  
  CDO72734.1 190 LVEVNNAAEMQRALEIGAKVVGVNNRnlhdfsvDMGTTSGLVDMVRERDV-ILCALSGIQSSADVQSYKAQGVNAVLVGES 269
                 69********************9999777776666788888888877764.888999999***************999965 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   8.6e-06     0.039     224     306 ..     193     273 ..     152     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.6e-06
                 E-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHH CS
      FMN_dh 224 vltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyg 306
                 v +a++++ra+e+G++ + v N   + +   + t + L ++v++   ++ + + +Gi++ +Dv    a G +avl+G  ++ +
  CDO72734.1 193 VNNAAEMQRALEIGAKVVGVNNRNLHDFSVDMGTTSGLVDMVRER--DVILCALSGIQSSADVQSYKAQGVNAVLVGESLMRA 273
                 6788999***************66666666666666665555554..4888999***********************988766 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.92   4.1e+03      30      49 ..      92     111 ..      89     133 .. 0.76
   2 ?   -1.6   0.0      0.35   1.6e+03      83     108 ..     194     219 ..     193     228 .. 0.81
   3 ?   11.3   0.1   3.7e-05      0.17     186     225 ..     233     272 ..     222     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.92
                   SHHHHHHHHHHHT-SEEEEE CS
  His_biosynth  30 dpvelakryeeegadelhvv 49 
                   +p+ +a  y++ ga  + v+
    CDO72734.1  92 NPARQALLYAQSGASVISVL 111
                   68889999999999988876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.35
                   SSHHHHHHHHHCT-SEEEESHHHHH- CS
  His_biosynth  83 rsledveelleagadkviigtaavkn 108
                   ++  +++++le+ga+ v ++   +++
    CDO72734.1 194 NNAAEMQRALEIGAKVVGVNNRNLHD 219
                   567789999*****999999776655 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.7e-05
                   HHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHHHT CS
  His_biosynth 186 laeavkipviasGGvgsledlkelksegvdavivgsalye 225
                   + ++ ++ + a  G++s +d+++ k++gv+av+vg+ l  
    CDO72734.1 233 MVRERDVILCALSGIQSSADVQSYKAQGVNAVLVGESLMR 272
                   4455677788999**********************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1954.90
//
Query:       CDO72735.1  [L=553]
Description: hypothetical protein BN946_scf184990.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-05   24.6   0.2    4.6e-05   23.2   0.2    1.8  1  F-box-like  F-box-like
     0.0038   17.1   0.0       0.01   15.7   0.0    1.8  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.022   14.5   0.0       0.05   13.4   0.0    1.5  1  G10         G10 protein


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   7.7e-09   4.6e-05       2      47 ..      27      74 ..      26      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 7.7e-09
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlvl 47
                 +LP E++ +++ + +p+d +r a++Cr  r +++ +  ++LWr+l+l
  CDO72735.1 27 HSLPAELIERVLIFSDPRDVSRYAQTCRFARKLVYEPkdQFLWRELYL 74
                58******9999888*******************544446******97 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-06      0.01       2      38 ..      25      61 ..      24      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilid 38
                tl +LP e+++ +L + +++d+ + +++++  r+l+ 
  CDO72735.1 25 TLHSLPAELIERVLIFSDPRDVSRYAQTCRFARKLVY 61
                8899****************************99985 PP

>> G10  G10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.4e-06      0.05       7      65 ..     212     270 ..     208     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.4e-06
         G10   7 kkkkkppegfekiedtleeleaklreaekeskeskkkeeslWkiarinhersryvyely 65 
                 ++++++p+ f  i+++l++ ++klr   + s+es+ ++es  ++a+i+++   +vy++ 
  CDO72735.1 212 SHARNAPPRFGAIAEELHQSRRKLRAYVALSHESSFNAESRARMAEIRRTSRCFVYDMR 270
                 567899***************************************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 3630.90
//
Query:       CDO72736.1  [L=259]
Description: hypothetical protein BN946_scf184990.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.8   0.0    2.1e-14   53.6   0.0    1.0  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.2e-18   2.1e-14       3     216 ..      36     253 ..      34     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.2e-18
         DLH   3 aylatpknakkpvvvviqeifGvndnikdiserlaee.GYvalaPdlYarqa......ldpndeaeaaraldelvskvaeekvlddlkaavaylksvpe 94 
                 +y+ +p+++ k + v + +ifG + + ++ ++ lae+    +l+Pd++   +      + p++ +e+a++    + + + ++ +++l   ++  k+ + 
  CDO72736.1  36 VYVTGPEKPGKVALVCVYDIFGFKPQTQQGADILAEKlNAQVLMPDFFEPAGpwpvdkFPPQTDEEKAKLQAFFGGPAKPQDAVAKL---INVGKALKA 131
                 7999*****9999999********888777777776514479**************9966777777777776677777777888888...677777777 PP

         DLH  95 vstkkvgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaa..nvdlelkvYpgagHaFa 190
                 +  + vg  GfC+GG++++l  ++    +da++a ++  +  ++ +++++++p l+l+  +De+i+ ++  ++ e ++++    + + k+Y+   H+Fa
  CDO72736.1 132 EGAGWVGTFGFCWGGKVTILAGSNPsTPFDAVAAIHP--AMLNHGDVTDLNVP-LGLYPSKDEPIDESK--QILEIIAKKpiSDKSDYKLYD-SFHGFA 224
                 7899***************999988877*********..7778899999****.699*********996..444444443113456678899.9***** PP

         DLH 191 ndsre...syneeaaedawervlelfkqv 216
                 +++++    +n++  ed ++r++ +f+++
  CDO72736.1 225 AARANlddPENKKHYEDLYARLVTFFGKA 253
                 **9999999*****************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1829.87
//
Query:       CDO72737.1  [L=260]
Description: hypothetical protein BN946_scf184990.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   46.1   0.0      5e-12   45.8   0.0    1.1  1  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.8e-16     5e-12       3     215 ..      36     253 ..      34     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.8e-16
         DLH   3 aylatpknakkpvvvviqeifGvndnikdiserlaeeGYv.alaPdlYarqa......ldpndeaeaaraldelvskvaeekvlddlkaavaylksvpe 94 
                 +y+a+p+++ k ++v + +i G   + ++ ++ la++  v +l+Pd++   +      + p++ +e a++    +   + e+ +++l   ++  ++ + 
  CDO72737.1  36 VYVAGPEKPGKVAIVCVYDILGFMPQTQQGADILAKKLNVqVLMPDFFEPAGpfpaekFPPKNDEEGAELQAFFGGTGKPENSVANL---IKVGNTLKA 131
                 79*******999************888888888887654439*********9****9955555555555444444444445666666...444455555 PP

         DLH  95 vstkkvgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanv..dlelkvYpgagHaFa 190
                 + ++ vg+ G C+G ++++l aa     ++a++a ++  +  ++e+++++k+p l+l+  +De+i+  +  ++ e ++++    + + k+Y +  H+ a
  CDO72737.1 132 EGVEWVGAYGLCWGPRVVILAAAAPsTPFNAVAAVHP--AMLHHEDVTELKVP-LGLYPSKDEPIDEVK--QILEIISKKSFadQNDYKLYGDSSHGWA 225
                 5599****************99999877*********..888999********.699*******98764..4444444443311345688********* PP

         DLH 191 ndsre...syneeaaedawervlelfkq 215
                  ++++     n+   ed ++r++ +f++
  CDO72737.1 226 GARADlddPTNKRDYEDLYARLIAFFGK 253
                 9998888899***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1919.71
//
Query:       CDO72738.1  [L=1530]
Description: hypothetical protein BN946_scf184990.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-48  165.3   0.0    3.8e-48  164.2   0.0    1.6  1  Pkinase         Protein kinase domain
    3.4e-40  137.4   0.1      7e-40  136.3   0.1    1.5  1  RhoGAP          RhoGAP domain
    4.2e-38  131.1   0.0    8.8e-21   74.4   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00023   20.1   0.0    0.00059   18.7   0.0    1.6  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.031   13.4   0.0      0.098   11.8   0.0    1.8  1  DUF1708         Domain of unknown function (DUF1708)
      0.091   12.1   0.0       0.19   11.0   0.0    1.4  1  Kinase-like     Kinase-like
        0.1   13.0   0.2       0.46   10.8   0.2    2.2  1  Histone         Core histone H2A/H2B/H3/H4
       0.13   11.6   4.8       0.14   11.5   1.2    2.2  2  FAM92           FAM92 protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   1.7e-51   3.8e-48       1     264 []      30     334 ..      30     334 .. 0.90

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 1.7e-51
                 EEEEEEEEEESSEEEEEEEETTTTE....EEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgk....ivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle..rkg 93 
                 y+  + +G G+++ Vy a  + t+       A+K+++ ++   +  + +++E +++  +khpn++r+ +++ + ++ly+ + +++ g++ad+++     
  CDO72738.1  30 YTIGSPIGFGASSIVYAAQYRPTDGgaliACALKVLDLDRLPPSALRLLQNETQLMSLSKHPNVLRVRGSWVDGHKLYIAMRLMNAGSVADVMRyaWPA 128
                 677889***********9988876533335799**********999************************************************64334 PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....................................... CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....................................... 153
                  l+ee ++ i+kq l+gl+ylH +g+iHrD+K +N+Lid++g + ++D+G+a+ l  + +                                       
  CDO72738.1 129 GLEEEVIRCILKQALQGLNYLHINGLIHRDVKAANLLIDDDGTVLLGDLGVAAFLWDHDEspvlpaaksrainfdpgsrqshghgrappvispvhrpsi 227
                 5*****************************************************9998888************************************** PP

                 ...BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SS CS
     Pkinase 154 ...ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkd 248
                     +sfvgt+ ++APEv+++++y++++D+Ws G++ +el  g+ p s  + ++   + +++        + ++ e    ++++s+ + +++  +l+kd
  CDO72738.1 228 lgkRKSFVGTPCWMAPEVINGKQYDASADIWSFGITAVELAQGRAPRSRMDPHKVLLMTVTD--------EpPKLERNTGPHKFSSAFAEVVALCLNKD 318
                 ************************************************44444333333333........23334455678899*************** PP

                 GCCSTTHHHHHTSGGG CS
     Pkinase 249 pkkRltaeellqhpyl 264
                 p+kR+ta+ellq +++
  CDO72738.1 319 PSKRPTAAELLQTSFF 334
                 ************9998 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.1   3.1e-43     7e-40       1     147 [.    1086    1234 ..    1086    1238 .. 0.94

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 3.1e-43
                  BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT.TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTS.SSHHHHHHH CS
      RhoGAP    1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds.dleeedvhavaslLKrfLrelpepLltkelyeelieaaks.edeeerlea 95  
                  P+iv+ c++ ie+rgld egiyRvsg  a+v+el++++++++a  + + + +dv++v+s LK++Lrelpep++ + l e++ ++    e++ ++   
  CDO72738.1 1086 PKIVRICIQDIEQRGLDAEGIYRVSGRHAAVQELQHKIERNEAAFQfNPTTDDVYSVSSFLKMYLRELPEPVFKFPLQERIQHTEGFdEHAATNFAV 1182
                  99*****************************************9999***********************************6443338888999** PP

                  HHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-T CS
      RhoGAP   96 lkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpk 147 
                  l++ +++LP ++++tL++L+ehL +va+++++nkM+aknLaivf+  ++ ++
  CDO72738.1 1183 LRSKMRRLPAIHQATLKALVEHLAKVASHAEKNKMDAKNLAIVFGSVIFGEE 1234
                  **********************************************999765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   3.9e-24   8.8e-21       3     154 ..      32     184 ..      30     199 .. 0.91
   2 !   54.4   0.0   4.7e-18   1.1e-14     168     257 ..     237     330 ..     223     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 3.9e-24
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS.SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea.teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  +g+ +G Ga + V+ ++++ ++  + + +a+K+l+ +    +  + l +e+++m+  khpn++++ g  +++++l+i + +++ G++ + +r  + + 
   CDO72738.1  32 IGSPIGFGASSIVYAAQYRPTDGGALIACALKVLDLDRlPPSALRLLQNETQLMSLSKHPNVLRVRGSWVDGHKLYIAMRLMNAGSVADVMRYAWPAG 129
                  67889*****************************755505566777778******99***************************************** PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETT CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardie 154
                  l+ + + ++  q  +G++yL+ + l+Hrd+ a N L++++ +v ++D G+a  + 
   CDO72738.1 130 LEEEVIRCILKQALQGLNYLHINGLIHRDVKAANLLIDDDGTVLLGDLGVAAFLW 184
                  *************************************************998774 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 4.7e-18
                  GGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTT....EES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 168 pvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.keg....krlekpekcpeelyelmkkcweedpeeRptfselve 257
                     WmapE+++ k++  ++D+WsfG++  E+++ g+ p +++++++vl +  +++    +r + p+k +++++e++  c+++dp++Rpt +el++
   CDO72738.1 237 TPCWMAPEVINGKQYDASADIWSFGITAVELAQ-GRAPRSRMDPHKVLLMTvTDEppklERNTGPHKFSSAFAEVVALCLNKDPSKRPTAAELLQ 330
                  568****************************99.********998876665233222225778899***********************999875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.6e-07   0.00059     311     400 ..     138     260 ..     102     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-07
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses...gare............................. 373
                      l++a++g++ L+   g++HrD+ + N+li      ++ + lL DL +a  l d++++    +                                
      CDO72738.1 138 ILKQALQGLNYLH-INGLIHRDVKAANLLID-----DDGTVLLGDLGVAAFLWDHDESPvlpA--Aksrainfdpgsrqshghgrappvispvhr 224
                     5889*********.9****************.....788999999999999997555554441..134556677777778888888888888888 PP

  Pkinase_fungal 374 .........rtGTleFmaievlkgeeHsyrhDLESf 400
                               +GT+ +ma ev++g++     D+ Sf
      CDO72738.1 225 psilgkrksFVGTPCWMAPEVINGKQYDASADIWSF 260
                     8888888889*************9998888888776 PP

>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.4e-05     0.098      67     169 ..    1133    1236 ..    1081    1254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
     DUF1708   67 elrktdiltLisvlkylWsrlpggvvgwdaYeeFkkkEkeselprdaFltfipkslssea.rasivydFldLlvaiaahgkknglggrklsrlaglw 162 
                  +  + d++++ s lk    +lp+ v +++  e+ +  E  +e + + F+ + +k+   +a ++  + +  + l+ +a+h++kn++ ++ l+ ++g++
  CDO72738.1 1133 NPTTDDVYSVSSFLKMYLRELPEPVFKFPLQERIQHTEGFDEHAATNFAVLRSKMRRLPAiHQATLKALVEHLAKVASHAEKNKMDAKNLAIVFGSV 1229
                  34457999*******************************************9999998773677778899*************************** PP

     DUF1708  163 AFehkdk 169 
                   F +++ 
  CDO72738.1 1230 IFGEEEI 1236
                  **86654 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.4e-05      0.19     141     189 ..     131     178 ..     113     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                  +e++ r +l  q+++   +L+ +gl+h ++++ nll d +g + lg+++
   CDO72738.1 131 EEEVIRCIL-KQALQGLNYLHINGLIHRDVKAANLLIDDDGTVLLGDLG 178
                  556667777.67888889****************************975 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00021      0.46      39     111 ..     944    1014 ..     911    1022 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
                  TT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     Histone   39 rryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnlla 111 
                  r  r + +a++  ++y+k    l   l ++R v+ + + +k+  ++ +e+++ + +a+E ++  l+  A+  +
  CDO72738.1  944 RSVRAKREAEEADKEYRKAVHWLET-LRIRR-VKLLESGFKSVESFVRESSETVKKAIEVYIDNLTAAAATQS 1014
                  4556777788888888888888877.9****.**********************************9997655 PP

>> FAM92  FAM92 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   6.4e-05      0.14      20     130 ..     702     816 ..     691     845 .. 0.80
   2 ?    0.5   0.1      0.15   3.3e+02     131     197 ..     918     988 ..     911    1009 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
       FAM92  20 lneavsivekhlgelcsifalvvrktaklrdkadelvkevkayaddeeineklcqGl.ksfadevaklqdyrdieverleakvveelkty....etlvk 113
                  + a +  e hl  l +++ ++ +       k+   +k+v+a+ dd  i+++ ++ +  + +d+v +    r + +e l + v+++l+++    +++ k
  CDO72738.1 702 AQSATNLFELHLKVLADSYLAFFQESVAALLKLHRKAKSVDAFLDDR-IDLSTTRVVwNDITDNVEREASTRTAFLENLGTNVIDPLANFkeeqDRIRK 799
                 57888999*********99999888888888999*********9875.6666666551679****************************944334699* PP

       FAM92 114 skrddlklaliardkev 130
                   r+dlk a++a    +
  CDO72738.1 800 RIREDLKDAITAHADFA 816
                 ***********986544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
       FAM92 131 krlrqleelkskfsadr....saaeselfkakmevsrtskeleeiinnferrklkdlktiisefiliemkf 197
                 k+l+ql+   +k    r    s       +ak e++ ++ke  + +  +e  +++ +k + s f  +e   
  CDO72738.1 918 KQLNQLMTFLDKGGNVRdggrSDNALRSVRAKREAEEADKEYRKAVHWLETLRIRRVKLLESGFKSVESFV 988
                 555666555554433333322444445579****************************9999998877543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.57
# Mc/sec: 8098.97
//
Query:       CDO72739.1  [L=442]
Description: hypothetical protein BN946_scf184990.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-14   51.5   0.1    9.6e-14   51.0   0.1    1.2  1  RRM_1      RNA recognition motif. (a.k.a. RRM, RBD, or RNP do
      9e-09   35.0   2.7    1.5e-08   34.3   2.7    1.4  1  zf-CCHC    Zinc knuckle
    3.2e-05   23.8   0.0    6.8e-05   22.8   0.0    1.5  1  zf-CCHC_3  Zinc knuckle
     0.0011   18.6   1.9     0.0041   16.8   1.9    2.0  1  zf-CCHC_5  GAG-polyprotein viral zinc-finger
  ------ inclusion threshold ------
       0.21   11.3   0.2       0.34   10.7   0.2    1.3  1  zf-CCHC_4  Zinc knuckle


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   2.7e-17   9.6e-14       1      70 []      83     145 ..      83     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.7e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +++g+Lp+ + +e+L+  F+k+G i++i+l         g++fVeF+++e+Ae+ ++++++  ++g++++
  CDO72739.1  83 VYIGGLPEHTRKEDLESCFGKIGNIVNIELKV-------GYGFVEFDNREAAEESVAKYHEGYFMGNKIR 145
                 8*******************************.......9***************************996 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   2.7   4.2e-12   1.5e-08       2      18 .]     164     180 ..     163     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 4.2e-12
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C++CG++GH+ar+Cp+
  CDO72739.1 164 ACFKCGQMGHWARECPN 180
                 7***************6 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.9e-08   6.8e-05       5      29 ..     163     188 ..     159     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.9e-08
   zf-CCHC_3   5 aaCQkClkkGHwtYECkn.agerkyt 29 
                  aC kC++ GHw+ EC+n a++r +t
  CDO72739.1 163 GACFKCGQMGHWARECPNlAAGRRAT 188
                 68****************95555544 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.9   1.2e-06    0.0041       2      18 ..     162     178 ..     161     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
                 --B-TTT-SSBS-TTT- CS
   zf-CCHC_5   2 pglCpRCkkgkHwardC 18 
                 pg C +C++  Hwar+C
  CDO72739.1 162 PGACFKCGQMGHWAREC 178
                 899************** PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   9.5e-05      0.34      32      48 ..     163     179 ..     157     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                  +C+ Cg +GH +++C+
  CDO72739.1 163 GACFKCGQMGHWARECP 179
                 68**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.52
# Mc/sec: 2565.52
//
Query:       CDO72740.1  [L=280]
Description: hypothetical protein BN946_scf184990.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-11   43.0   0.0    5.6e-11   42.2   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain
    2.3e-10   40.8   0.6    2.3e-10   40.8   0.6    2.1  2  UCR_TM    Ubiquinol cytochrome reductase transmembrane region
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.021   14.9   0.0    1.4  1  SUKH-4    SUKH-4 immunity protein


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   9.4e-15   5.6e-11      31      87 ..     210     265 ..     159     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 9.4e-15
                 -TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEEE CS
      Rieske  31 dedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprplat 87 
                 +++ e+ ++ +vCtH+g+ + ++++d +    CpcHg+ yd +G+++kgPap +l+ 
  CDO72740.1 210 TKKPEWLVMLGVCTHLGCVPIGEAGDYG-GWFCPCHGSHYDISGRIRKGPAPLNLEV 265
                 3377888*************99777545.677*******************998765 PP

>> UCR_TM  Ubiquinol cytochrome reductase transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.6   3.8e-14   2.3e-10       5      66 .]     100     150 ..      96     150 .. 0.88
   2 ?   -3.6   0.2       2.8   1.7e+04      16      27 ..     199     210 ..     193     214 .. 0.64

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.8e-14
      UCR_TM   5 kvPdfsdyrresvkDpskssretedeRkaftylvlaggavvgayaaKsvVqkfvssmsASAD 66 
                 +vPdfs+y+ ++           e  +++++y++ +  ++++a++aKs+V++f+ +msASAD
  CDO72740.1 100 QVPDFSKYQAKD-----------ESRNRGLAYFMIGSLGLLSASVAKSTVTEFLATMSASAD 150
                 688888888764...........3346**********************************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.8
      UCR_TM  16 svkDpskssret 27 
                 s  Dp++ ++ t
  CDO72740.1 199 SLRDPESDEQRT 210
                 556777766544 PP

>> SUKH-4  SUKH-4 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.6e-06     0.021       5      82 ..     141     222 ..     138     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
      SUKH-4   5 eLeelfGpggvvrlpaeavaawllpeparrfLvevGlPd...lqllae.eeeaavadlelvaaerseelpaeaggllvLGal 82 
                  L+ + ++ +v+ +++ +v+ + +pe     + + G P+   + +++e ee++++++ +l+++e+ e+  ++++ l+ LG +
  CDO72740.1 141 FLATMSASADVLAMARVEVDLASIPEGKNVIIKWRGKPVfirHRTQEEiEEARNTDWKSLRDPESDEQRTKKPEWLVMLGVC 222
                 5788889999********************************999999********************************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1987.03
//
Query:       CDO72741.1  [L=393]
Description: hypothetical protein BN946_scf184990.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-35  122.6   0.0    3.4e-35  122.0   0.0    1.3  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    0.00015   22.1   0.6     0.0042   17.5   0.5    2.5  2  GDPD_2    Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   3.8e-39   3.4e-35       1     258 [.      42     358 ..      42     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 3.8e-39
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH..............BGGGS-HHHHHTSTECCTTCCCCSCCCSS CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagr.............ldvkdltleelkrldkiakenkaqlsenrv 86 
                 HRG  gn  EnTl+sfa  + +Ga  +E+D  +TkDg++Vv HD+ +      ++               ++ +ltl +l++ld  +++++  ++++  
  CDO72741.1  42 HRGGRGNTIENTLPSFAWGLIDGATTLELDNGITKDGHVVVWHDEEITPAKCQDTTpaypgdpdfpyvgKYIANLTLTQLRTLD-CGSKRQHGYPMQL- 138
                 ********************************************77766555555588999***********************.6666533333333. PP

                 GCC...B...BHHHHHHH..HHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHH CS
        GDPD  87 rle...fpfptleevlkk..pqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllfltegg 180
                   +   +++ tl+ev+++  +++ +++i ++i+ +  a++       + ++ +v +  ++ ++++ k  ++f+sf++++l++++++++++ +  l+++ 
  CDO72741.1 139 --TypgTRISTLQEVFDFvsCADPQHEILWNIESKIDAQHSNR---TFGVADFVEKQYEVFKNTSYKNSITFQSFDWRTLIAMKQLDSSITTSALVDE- 231
                 ..2457************7766666666666666655555555...666666666666666788999*********************9999999973. PP

                 HHHC-E.EECHCCCCCCCTCCCCHHCCCHCCCE........................................................B.CHHHHHHH CS
        GDPD 181 teaeadssleraakfakadallgevsavaeglg........................................................dpdlVkraks 223
                  + + +     +++++ a ++++e +++ ++ +                                                        ++++V++a++
  CDO72741.1 232 -YISPP----LSYNACDAHGFYSETALMPDNSTspwlaglrlddfsgptlgeqvaqaaraigadilspsaeshqspvpdpdmedyvpftTRRMVEEAHR 325
                 .33333....46999999999999999999988999999************************************************************ PP

                 TT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 224 rglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                  gl v ++tvn +  + +++ll+++vdg+itD+p+
  CDO72741.1 326 LGLLVKPFTVNRM--NIVDQLLDWKVDGIITDYPN 358
                 *************..******************96 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.034   3.1e+02      12      20 ..     209     217 ..     197     217 .. 0.89
   2 !   17.5   0.5   4.7e-07    0.0042      14      29 ..     342     357 ..     334     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.034
      GDPD_2  12 vwrelvgaG 20 
                 +wr+l++++
  CDO72741.1 209 DWRTLIAMK 217
                 8******97 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.7e-07
      GDPD_2  14 relvgaGVdgInTDdl 29 
                  +l++++VdgI+TD++
  CDO72741.1 342 DQLLDWKVDGIITDYP 357
                 589************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2804.94
//
Query:       CDO72742.1  [L=645]
Description: hypothetical protein BN946_scf184990.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-07   29.5   1.9    9.4e-07   28.8   1.9    1.4  1  CHCH      CHCH domain
  ------ inclusion threshold ------
      0.066   13.0   1.2       0.11   12.2   1.2    1.3  1  NDUF_B7   NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
       0.16   12.3   2.6       0.42   10.9   2.5    1.6  1  Pet191_N  Cytochrome c oxidase assembly protein PET191


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.9   1.6e-10   9.4e-07       1      35 []     577     611 ..     577     611 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.6e-10
                 THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHCC CS
        CHCH   1 CgeefkeylkClkdnsdefskCrkefeafkeCvkk 35 
                 C++ ++ yl+Cl++n++++  Cr +++ + eC+++
  CDO72742.1 577 CKQYMQVYLDCLRKNGNNSTPCRHLNKDYLECRMN 611
                 9999*****************************96 PP

>> NDUF_B7  NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.2   1.9e-05      0.11      13      54 ..     570     611 ..     565     618 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
     NDUF_B7  13 plkeRDyCAhlLiplnkCrrenfplpwkCehekhayekCqye 54 
                 pl++   C +++  + +C r+n  + + C+h   +y +C+++
  CDO72742.1 570 PLDHYGECKQYMQVYLDCLRKNGNNSTPCRHLNKDYLECRMN 611
                 7788889********************************875 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.5     7e-05      0.42      25      56 ..     581     611 ..     575     619 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
    Pet191_N  25 rktpkeClkekaeelpeeCkqlrkayfeCkrg 56 
                  +   +Cl+++  + ++ C++l k+y eC+++
  CDO72742.1 581 MQVYLDCLRKN-GNNSTPCRHLNKDYLECRMN 611
                 456779****9.788899************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4398.59
//
Query:       CDO72743.1  [L=659]
Description: hypothetical protein BN946_scf184990.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-103  345.5   0.0   3.5e-103  345.2   0.0    1.1  1  NPL4      NPL4 family
    9.1e-67  223.7   0.0    1.8e-66  222.8   0.0    1.5  1  zf-NPL4   NPL4 family, putative zinc binding region
    0.00018   22.0   0.0    0.00034   21.0   0.0    1.4  1  UN_NPL4   Nuclear pore localisation protein NPL4


Domain annotation for each model (and alignments):
>> NPL4  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.2   0.0  5.9e-107  3.5e-103       1     306 [.     259     587 ..     259     589 .. 0.93

  Alignments for each domain:
  == domain 1  score: 345.2 bits;  conditional E-value: 5.9e-107
        NPL4   1 RlgylyGryekydevPlGikavveaiyEPpqedeldgltl.ledeeekevdeiakkl..glekvGviftDlldagakdgtvlckRhkdsyflsslEvil 96 
                 R+g+l+G+ye y +vP+Gikavveai+EPpqe+e dgltl l++e+e ++ ++a++    l+ vG iftDl +++++ ++ ++kRh +s+flsslEvi+
  CDO72743.1 259 RFGWLIGHYEPYPDVPMGIKAVVEAIHEPPQEGEIDGLTLgLPWEDEPRIRALAAQAttPLQIVGYIFTDLEPTEEDRSKLKYKRHPQSFFLSSLEVIF 357
                 9*****************************************************987557*************************************** PP

        NPL4  97 aaklqlkhpnvtkysetgkfsskFvtvvvsgdeegeieiesyqvsneaealvradiiepstdPslayvre....sseerYvpevfYkkkneyglevken 191
                 aa++q+++p +++ s tgkf+s+ +t v++g eeg i++++yqvs++a a+v+ad+ie+s+dP +++v+e    + ++rYvp+vf++ kneygl+v++n
  CDO72743.1 358 AAHVQNANPTPSRSSFTGKFGSRMITAVLTGTEEGGIDVSAYQVSEQACAMVDADMIEASVDPGIMRVKEedreEGSARYVPDVFFRYKNEYGLDVQKN 456
                 *********************************************************************977656667********************* PP

        NPL4 192 akPalPveyLlvslthgfpkepkplFkkkakfpienRealgelqdlkelakylkssa...............kkeleealsdfHlllylakleilskee 275
                 akP +PveyLlv++thgfp++p+p+F +++++ ienR  l++ q+++++ + l++ +                + l + +sd+Hl+ +l +++++++++
  CDO72743.1 457 AKPCFPVEYLLVNVTHGFPQNPSPMF-RSTQYRIENRPGLED-QSIESVLHRLAEFDaydisesahggdlqkRQALARFISDWHLIAFLGTTGLINQND 553
                 **************************.999*********987.555565555555555777888999999877888999******************** PP

        NPL4 276 lkllleavk...ekdeekllelvesegwktllti 306
                 +++l+++++    ++ ++l el ++egw tl+t 
  CDO72743.1 554 QRVLIRTATapdIESPTALDELLRTEGWLTLMTF 587
                 *********5544566788999*********985 PP

>> zf-NPL4  NPL4 family, putative zinc binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.8   0.0     3e-70   1.8e-66       1     145 []     111     256 ..     111     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 222.8 bits;  conditional E-value: 3e-70
     zf-NPL4   1 vkedevDellekqdGkikrkrdeklcrhgekgmceycsplepydeeylkekkikhlsfhaylrklnekknkkesssskiapLeelsykvkkecksg.ha 98 
                 v+ed+vD+++++q+Gki+r rd+++c+hg+++mc+yc+plepyd++y++e++ikhls+haylrkl+ k+++++s +s ++pL+ lsykvk +c++g h+
  CDO72743.1 111 VEEDAVDKYWRSQEGKIPRGRDSRFCKHGANAMCDYCMPLEPYDAAYHAEHNIKHLSYHAYLRKLTPKASSSASVTSVLPPLNPLSYKVKDPCPTGgHP 209
                 789*******************************************************************************************998** PP

     zf-NPL4  99 pwPkgicskcqPsaitlqrqkfRmvDhvefesseivdkfldaWRktg 145
                 pwP+gic+ cqPsaitlq+q+fRmvDh+e++s+eivd+fl+aWR+tg
  CDO72743.1 210 PWPAGICTSCQPSAITLQSQPFRMVDHLEIASPEIVDRFLEAWRRTG 256
                 *********************************************98 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.8e-08   0.00034       5      76 ..       1      74 [.       1      77 [. 0.84

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.8e-08
                -EEEEEETTEEEEEEE-TTSBHHHHHHHHHHHSS-STT.T-EEESSTTCGCCCSSS.SSSCCCTCH--TT-EEE CS
     UN_NPL4  5 iiiRvqSadGikRieisekstlktllekvaeelkfsen.gfslylernkttelvss.ssksvkevglkhGdmly 76
                ++iR +S+dG  R e +++  +++ll k+ e  +  +     ++ +   ++ l s  + ++++++g khGd+l+
  CDO72743.1  1 MLIRLRSKDGNFRFEFQPTADISELLAKILETAENADPsTVTISNQPRGNEVLISTlKGRNLQSLGFKHGDLLF 74
                79****************************9998887747777777666665554426789************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4469.09
//
Query:       CDO72744.1  [L=435]
Description: hypothetical protein BN946_scf184990.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-18   66.1   0.1    3.7e-18   65.9   0.1    1.1  1  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.1     2e-22   3.7e-18       3     174 ..      48     222 ..      46     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 2e-22
                     EEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTS.SEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHH CS
  DNA_pol_A_exo1   3 ivtdeeeleelieelknlkvvavDtEttsldlisa.tlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlardf 96 
                     ++++ ++++++i++l + k +++DtE+++  +     + ++l+ql  +    +i   ++++    e+l++ll+de++ k g +++ D + l++d+
      CDO72744.1  48 YIQNVDAANQAISQLHS-KILGFDTEWKPNFIKGRaENPVALVQLASEHLILLIHVSYMPT--FPEKLRELLADETVLKAGVGIQKDCKKLYHDY 139
                     67888999999999966.9**********9997666999******9987777766666666..69****************************** PP

                     TS--SSEEEHHHHHHHTTHSTT.......SSHHHHHHHHHSB---GHCC.TTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHH CS
  DNA_pol_A_exo1  97 gielenlfdtmlaayvldyers.......hsLdsLaekylgdleldkee.qiakwqkarplleeqllYAaeDadvllrlfkkLtke 174
                     +++++n +d+ l a+  d  r        ++L+ L+e y + l+l+k   q ++w    pl   q +YAa+D++v l l+ +L+ +
      CDO72744.1 140 DVDTRNCVDLALLARTVDNARWkgkysnpIGLARLCETYEE-LTLQKGRvQTSNWE--LPLDLRQQQYAANDCHVGLTLYTRLAAM 222
                     **********877777777777799****************.99988763678888..***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3062.54
//
Query:       CDO72745.1  [L=409]
Description: hypothetical protein BN946_scf184990.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0096   14.8   0.1      0.015   14.2   0.1    1.2  1  VSP       Giardia variant-specific surface protein
  ------ inclusion threshold ------
      0.033   14.0   2.0      0.034   13.9   0.0    2.1  2  SprB      SprB repeat


Domain annotation for each model (and alignments):
>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.6e-06     0.015     345     394 ..     162     214 ..     148     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-06
         VSP 345 kGsvlcylikds...gstnks.GlstGaiaGisvavvvvvgGlvGflcwwficr 394
                  Gs  c  + d+    st ks  ls+Ga aGi++ + +  g l+G l  +f+ r
  CDO72745.1 162 AGSTKCLDLDDAlnsQSTSKSnSLSAGATAGIAIGTAI-AGALLGILASFFFTR 214
                 68888887777665479999846***********9876.689******999987 PP

>> SprB  SprB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.4       1.3   1.2e+04       5      10 ..      58      63 ..      57      64 .. 0.79
   2 ?   13.9   0.0   3.8e-06     0.034      17      35 ..      95     113 ..      94     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.3
        SprB  5 tnvtCn 10
                +++tC+
  CDO72745.1 58 NPPTCF 63
                589**9 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.8e-06
        SprB  17 ItvtvsGGtapYtYswngg 35 
                 I++ +++Gt+p+tY++ ++
  CDO72745.1  95 IQLKPTNGTPPFTYTIAPA 113
                 78999**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2898.69
//
Query:       CDO72746.1  [L=504]
Description: hypothetical protein BN946_scf184990.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-46  157.2   0.6    8.8e-46  155.8   0.2    1.9  3  Las1      Las1-like


Domain annotation for each model (and alignments):
>> Las1  Las1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.2   4.9e-50   8.8e-46       1     152 [.       7     153 ..       7     154 .. 0.97
   2 ?   -2.7   0.0      0.31   5.6e+03      79      90 ..     195     206 ..     170     260 .. 0.54
   3 ?   -3.0   0.0       0.4   7.1e+03      72      91 ..     366     385 ..     345     404 .. 0.69

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 4.9e-50
        Las1   1 tpWrdrrellevreqlyaessseeeerkralarvsawrsrgneklphavestalLleailsdeekklsasssssalraaysaalvRfvnglldsaqkkq 99 
                 +pW+d +el++v+ ++y  + ++ e+ k a+ r++aw+  ++  lpha+es  ++l++il+d++ ++s  ss  +lr+ y++al+R+vngl+d+ q ++
  CDO72746.1   7 VPWQDLSELEKVCGWIY-ADANDLESTKLAVCRLAAWKASTP--LPHALESAHAILSVILQDGTAAMS--SSYLSLRMGYASALIRLVNGLVDPLQLGA 100
                 7****************.88999***************9999..*********************995..5999************************* PP

        Las1 100 raasvaavakelglpatlVelRHeatHeelpslaeLreaakkaLewlwenYWk 152
                 +a+s++++a++lglpa++VelRH+atHe+lpsl++Lr aa++a++wl +nY+ 
  CDO72746.1 101 YARSINSIAQQLGLPAWFVELRHAATHEDLPSLEVLRDAAREAMNWLLHNYFL 153
                 ***************************************************85 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.31
        Las1  79 aysaalvRfvng 90 
                 +y + +++++  
  CDO72746.1 195 TYRTEITKVMRE 206
                 444444443332 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.4
        Las1  72 sssalraaysaalvRfvngl 91 
                 ++ + + +  aa+vR+v+ l
  CDO72746.1 366 DADDAEDIRDAAIVRIVSSL 385
                 45555566678899998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3743.88
//
Query:       CDO72747.1  [L=487]
Description: hypothetical protein BN946_scf184990.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-49  167.6   0.0    1.1e-48  166.2   0.0    1.6  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.0   6.2e-53   1.1e-48      41     438 ..      16     449 ..       3     468 .. 0.84

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 6.2e-53
                 ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS.. CS
        p450  41 lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess.. 137
                 + ++p     +p+ +++vl+  + +++       +++s+ +  g +vl+a+gek++ +R++l+p++   ++++l  ++ + + +l + + ++  +++  
  CDO72747.1  16 QPQTPCLWTADPQVIRHVLCSYN-YVKP----WEVSISAARVVGDSVLVAEGEKHRGQRSILNPAFGAIQIKELAHIFVQKSLELRDVWVEEIASQGgt 109
                 55677888899***********6.4444....345555579**************************998889****************9999999999 PP

                 .EEETHHHHHHHHHHHHHHHHHSSHHHTTT.SSHHHHHHHHHHHHHH...HHHCHHH.HCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        p450 138 .elditellskaaldvigsilFgarfdlle.deklselvkaveelss...llskssv.qllllfpllkylptkllrklkeavkklkdlldklieerret 230
                  +l++ + l k +ldvig   F  +++ l+ + k++el +a+ ++++    l  s +  l+ +fp+l+ +p++ +r+++ea  ++  +  kli+++++ 
  CDO72747.1 110 aRLNVLDGLKKTTLDVIGLAGFDYPLEALNsKGKPNELNEAFTRIFTktpPL--SLHrILVSIFPFLDLFPDERNRRVQEANVVMRRIGLKLIQDKKAA 206
                 9*************************97761457999********9955423..22304778999********************************** PP

                 HCHC...........SCSSCSHHHHHHHHC..TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHH.HHH......HHHHHHHHSHHHHHHHHHHHHHHCCT CS
        p450 231 ldsa...........kksrrdfldalllak..kekkgesklsdeelaatvlellfaGvdTtss.tls......waLyeLaknPevqeklreEidevlgd 309
                 + ++           +   rd+l +l++a   k+  +++ lsdee+ a++ +   +++  ts   l+      w+L+ L +nP vq+klreE+  v  +
  CDO72747.1 207 ILRElgnkggnidkkDLPGRDLLTLLIKANmaKDLPENQRLSDEEVLAQIPTWVHESFTWTSVfELThhacrpWCLFALTQNPAVQQKLREELLAVPTE 305
                 **99********97755789*********9776666668******************9866642222223335*******************9999877 PP

                 TTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET.........T.....EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS CS
        p450 310 kreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir.........g.....ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg 393
                   +pt+d+l+ l yld+v++EtLR h +v   ++R +  + vi+         g       i  G ++i++  a+h++++++ +++ eF+peR+++  +
  CDO72747.1 306 --SPTMDELAALSYLDWVVRETLRVHAPVT-WTMRSAGIEDVIPvsepyvdryGktqheIRIAPGNRIITSFLAVHHSKAIWgEDALEFKPERWESPPE 401
                 ..7***************************.888998776666533223322214444678*********************************98777 PP

                 ...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 394 ...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                    +  +    +l F+aGp+ CiG rl   el+ ++ tl++ Fe+el 
  CDO72747.1 402 kisEIPSVWSHMLTFSAGPHGCIGYRLSLAELRALIFTLVRAFEFELA 449
                 655333455789**********************************83 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.48
# Mc/sec: 3059.42
//
Query:       CDO72748.1  [L=485]
Description: hypothetical protein BN946_scf184990.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-18   65.3   2.1    7.3e-18   64.4   2.1    1.5  1  Integrase_H2C2  Integrase zinc binding domain
    3.1e-09   37.1   0.1      1e-08   35.4   0.0    1.9  2  rve             Integrase core domain
  ------ inclusion threshold ------
      0.073   13.3   0.0       0.18   12.0   0.0    1.6  2  DDE_Tnp_IS240   DDE domain


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   2.1   1.2e-21   7.3e-18       3      57 ..      85     139 ..      83     140 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.2e-21
  Integrase_H2C2   3 kslrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     ++ r +il++aHd +gH G  +t + +++r++Wp+m++dv  yv++C+ Cq r++
      CDO72748.1  85 PEKRLDILRAAHDCLGHRGQYATSQFVSERFWWPTMQEDVAWYVRTCHLCQVRQH 139
                     57899**********************************************9986 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.7e-12     1e-08       7     112 ..     157     257 ..     153     263 .. 0.87
   2 ?   -2.9   0.0       1.2   7.4e+03      87     106 ..     370     389 ..     368     390 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.7e-12
         rve   7 lwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdn 105
                 +w +D ++++    +g   + v+ +  s +     l++e+d ++   + +  ++r g     ++++Dngs++  +a+r++ ++++ ++    p++++ n
  CDO72748.1 157 RWYIDSMKMP--ASNGYRIIVVARCSVSAWPEWRMLRTENDRTLGDFIFQDLICRWGC--LVELVTDNGSAFL-SAVRDLEKRFNLHHIKISPYNSKAN 250
                 7999999999..555579999******************7777777777777777777..79***********.7************************ PP

         rve 106 GkvErfh 112
                 G+vEr h
  CDO72748.1 251 GIVERSH 257
                 *****99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
         rve  87 ladlgirvsftrpgrpqdnG 106
                  ++ +i+ s++r+ rp++ G
  CDO72748.1 370 MRHTQIEKSLNRKMRPRYTG 389
                 6799999********99876 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05      0.18      60     111 ..     214     265 ..     195     284 .. 0.86
   2 ?   -3.7   0.0       2.2   1.3e+04      84     103 ..     328     347 ..     318     360 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
  DDE_Tnp_IS240  60 eeivtDkasayasalkelkreg.elfdevshvqvkylnnriEsdhrtlKkrlr 111
                    +e+vtD  sa++sa++ l + +   + ++s +++k  n ++E++h   ++ l+
     CDO72748.1 214 VELVTDNGSAFLSAVRDLEKRFnLHHIKISPYNSKA-NGIVERSHFDTRQVLF 265
                    689*******************55567999999999.99******99988765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
  DDE_Tnp_IS240  84 fdevshvqvkylnnriEsdh 103
                    +d+ s +++++ + riE+  
     CDO72748.1 328 HDQLSLLKSRVYRARIEAAK 347
                    45555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3351.50
//
Query:       CDO72749.1  [L=366]
Description: hypothetical protein BN946_scf184994.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-21   74.9   0.1    6.6e-21   74.2   0.1    1.4  1  ATP_transf  ATP adenylyltransferase


Domain annotation for each model (and alignments):
>> ATP_transf  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.1   3.7e-25   6.6e-21       1      65 [.     283     347 ..     283     348 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 3.7e-25
  ATP_transf   1 sYNllmtkewmvviPRsaegaele.evgglslNslglaGtllvkseeeldalkeepgplevLaevG 65 
                 sYN+++t e+++v+PR++e+++l  + + ls+N+lg+aG+llvkse+el a+k e+g+  +L+ vG
  CDO72749.1 283 SYNVILTLEHIHVVPRRRETHTLArTGEALSVNALGFAGMLLVKSEAELGAVK-EEGVGAILRGVG 347
                 8*********************999***************************8.**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2708.85
//
Query:       CDO72750.1  [L=155]
Description: hypothetical protein BN946_scf184994.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1157.18
//
Query:       CDO72751.1  [L=454]
Description: hypothetical protein BN946_scf184994.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0004   19.7   3.8    0.00097   18.5   3.8    1.6  1  SKG6        Transmembrane alpha-helix domain
     0.0095   14.8   0.0      0.013   14.3   0.0    1.2  1  Amnionless  Amnionless
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.18   11.3   0.0    1.3  1  Rax2        Cortical protein marker for cell polarity
       0.12   13.2   0.0       0.22   12.4   0.0    1.4  1  EphA2_TM    Ephrin type-A receptor 2 transmembrane domain
       0.21   11.3   1.6       0.23   11.2   0.4    1.6  2  GT87        Glycosyltransferase family 87


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   3.8   2.7e-07   0.00097       2      38 .]     286     320 ..     285     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.7e-07
        SKG6   2 sdssnsntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 s +++ ++v I++aV+  V+V i+++l il+  rRR+
  CDO72751.1 286 SHRGLPKGVIIGIAVGCAVVVLIAAFLLILL--RRRR 320
                 67788999******************99999..4443 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.8e-06     0.013     341     383 ..     280     328 ..     247     378 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-06
  Amnionless 341 g......apgesaglvlgivfglvlllllllillllllrrkgvlrlpql 383
                 g      ++g + g+++gi +g+++++l++++ll+ll rr+ ++r ++ 
  CDO72751.1 280 GssasnsHRGLPKGVIIGIAVGCAVVVLIAAFLLILLRRRRRIVRRRRH 328
                 1222235789999*****************************9976663 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.9e-05      0.18     154     193 ..     273     321 ..     232     335 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
        Rax2 154 k...........kkkkklsrgfVVlIgLAlALgtvallgllgiilayirkk 193
                 +           ++++ l++g++++I+ ++A+  v+l+  + +il + r++
  CDO72751.1 273 ErtsgiggssasNSHRGLPKGVIIGIAVGCAV--VVLIAAFLLILLRRRRR 321
                 13455556666689999999999999999985..67777777777665554 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05      0.22       1      37 [.     295     342 ..     294     389 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl...........k 37 
                 ii++av+ +v+++i+  l ++l+rrr+  r++++++            
  CDO72751.1 295 IIGIAVGCAVVVLIAAFLLILLRRRRRIVRRRRHKTalpspilplqdP 342
                 344555555555555555555555555555555544555554444330 PP

>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.99   3.6e+03     176     190 ..      51      65 ..      37      92 .. 0.46
   2 ?   11.2   0.4   6.3e-05      0.23     133     224 ..     233     325 ..     224     332 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.99
        GT87 176 lslagllaralalgl 190
                 +slag+ ara a ++
  CDO72751.1  51 QSLAGSAARAYANST 65 
                 334444444333222 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.3e-05
        GT87 133 aatalvltalpllllp.pssleyfletlfdtseri..aedvgnqsllslagllaralalgls.avtllwlvlvllvvalaavaawrlrrrerllal 224
                 aa+++v  a+p+  +   ss+++  +  f + +    a++   +s  ++ g+ a  ++ gl+ +v +  +v +++vv++aa++++ lrrr+r +++
  CDO72751.1 233 AAVTAVPNAAPASPVNtDSSVSDAQASAFPNAS-FsnASQPERTS--GIGGSSASNSHRGLPkGVIIGIAVGCAVVVLIAAFLLILLRRRRRIVRR 325
                 333333333333333354455555553333323.22344555555..8888888888888843333444444566677777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3319.86
//
Query:       CDO72752.1  [L=919]
Description: hypothetical protein BN946_scf184994.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-08   33.4   0.0    9.1e-08   32.0   0.0    1.8  1  HicA_toxin   HicA toxin of bacterial toxin-antitoxin,


Domain annotation for each model (and alignments):
>> HicA_toxin  HicA toxin of bacterial toxin-antitoxin,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   5.1e-12   9.1e-08       1      52 [.     839     893 ..     839     898 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 5.1e-12
                 -HCHHHHHHHTT-EEE.EEETTEEEEE-TTSS-..EEEEE.S-SSS--CCCHHHH CS
  HicA_toxin   1 wreviklLeklGfevv.rqkGSHvrfkhpdkrg..ivtvppHpgkelkpgtlksI 52 
                 w+++++ + +lGf+++ ++ GS vrf  p++++  i +++pHp+++++p+ l++ 
  CDO72752.1 839 WEKFVRMMTDLGFTYEpGTAGSSVRFDPPNPKDrsISFHKPHPNPNIHPKKLRDF 893
                 99**************666*********999999999************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.34s 00:00:01.38 Elapsed: 00:00:00.49
# Mc/sec: 5618.86
//
Query:       CDO72753.1  [L=566]
Description: hypothetical protein BN946_scf184994.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-53  179.9   0.0    7.3e-53  179.4   0.0    1.2  1  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
      0.086   12.9   0.0       0.17   11.9   0.0    1.4  1  IL34        Interleukin 34


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   8.2e-57   7.3e-53       2     214 ..     274     517 ..     273     518 .. 0.85

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 8.2e-57
  RabGAP-TBC   2 elRgevWklllgyep..........evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYc 90 
                 +lR+ vW+lllgy+p           +kr ++ +      e++ s  ++  ++++++qI+ Dvprt p  +   ++++q++LeriL++++i++p+ gY+
  CDO72753.1 274 DLRPLVWPLLLGYLPlpkptrastlARKRREYASL----VETTFSRGKDGLDQQIWHQIEIDVPRTRPGVRLWMQASTQRSLERILYVWAIRHPASGYV 368
                 69***************998865443333333333....3333444455556788*************88***************************** PP

  RabGAP-TBC  91 qGmndivaplllvsldeee.......................aFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelf 166
                 qG+nd++ p++ v+l+ +                        +Fwc+++Ll  ++++d+y+ ++pg++r +k++ el+ ++d  l+ hl+ e++++++f
  CDO72753.1 369 QGINDLATPFFQVFLSAYIdsdpedfdtallsdsvrsaieadTFWCLSRLL--DGIQDNYIAGQPGIHRSVKRMAELVARIDAPLAAHLEVENVEFMQF 465
                 ***********5555555555555577777777777777888*********..********************************************** PP

  RabGAP-TBC 167 aikwfltlflrefpletvlrlwD.lllege....kfvllrvalailklleeel 214
                 a++w+++l++re+++++++r+wD +l+eg+    +f +l+v+ a+l +++++l
  CDO72753.1 466 AFRWMNCLLMREISVQNTIRMWDtYLAEGTdafsQF-HLYVCSAFLVRWSKKL 517
                 ***********************666688899*555.*******998888876 PP

>> IL34  Interleukin 34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.17      65     108 ..     340     384 ..     334     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHH.HHHHHHTT--TTSTTHHHHHHHHHHHHHHHHTTTT CS
        IL34  65 yLWvlvsls.avekvlevLlekHPsrkYlqelerllkdvqevlkd 108
                 +LW++ s++ ++e++l v   +HP+  Y+q +++l + + +v+  
  CDO72753.1 340 RLWMQASTQrSLERILYVWAIRHPASGYVQGINDLATPFFQVFLS 384
                 79***9865389********************9998887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3816.89
//
Query:       CDO72754.1  [L=671]
Description: hypothetical protein BN946_scf184994.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-17   64.0   0.6    1.5e-17   64.0   0.6    6.7  5  NUP50     NUP50 (Nucleoporin 50 kDa)
      2e-12   47.4   0.4    3.8e-12   46.5   0.4    1.4  1  Ran_BP1   RanBP1 domain


Domain annotation for each model (and alignments):
>> NUP50  NUP50 (Nucleoporin 50 kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.6   1.6e-21   1.5e-17       2      70 ..       2      82 ..       1      83 [. 0.86
   2 ?   -5.6   4.6         2   1.8e+04      61      70 ..     103     112 ..      91     140 .. 0.55
   3 ?  -19.3  23.0         2   1.8e+04      54      67 ..     323     340 ..     215     344 .. 0.79
   4 ?   -4.7   8.4         2   1.8e+04      54      69 ..     425     445 ..     386     447 .. 0.73
   5 ?   -4.7   1.5         2   1.8e+04      17      24 ..     513     520 ..     501     529 .. 0.40

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.6e-21
                XXXXSSXXXTTTX..XXXXXXXXXXXXXXXXSHHHHCS-S-S---TT.......T--XXX..........XXXXXXXXXXXXXXXX CS
       NUP50  2 KRgAdkqLtkdnwdededeeeeeagtfkkAseevLakRkIkkakrrv.......sssaps..........eaasssafsgFsgfgk 70
                KR AdkqL+kd+ d+d+d e+ ++g fkkA+e+vLa+R+Ik +++r+       s               ++ ++++f gFsgfg+
  CDO72754.1  2 KRAADKQLSKDDMDGDDDVEDVGTG-FKKADESVLARRPIKALPKRSlagaasaS----AtspsplatseSPVATPKFTGFSGFGS 82
                9*************77777767777.*********************99877532....133579999999999**********97 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 2
                 XXXXXXXXXX CS
       NUP50  61 afsgFsgfgk 70 
                 ++s+Fs+ ++
  CDO72754.1 103 SSSSFSFSNT 112
                 4555554443 PP

  == domain 3  score: -19.3 bits;  conditional E-value: 2
                 X....XXXXXXXXXXXXX CS
       NUP50  54 s....eaasssafsgFsg 67 
                 s    +++ss+++sgFs+
  CDO72754.1 323 StsssSTSSSNTSSGFSF 340
                 033347788888888886 PP

  == domain 4  score: -4.7 bits;  conditional E-value: 2
                 X.....XXXXXXXXXXXXXXX CS
       NUP50  54 s.....eaasssafsgFsgfg 69 
                 +     +++sss++sgFs+ +
  CDO72754.1 425 PfatstPEKSSSSSSGFSFGS 445
                 144455899999999999765 PP

  == domain 5  score: -4.7 bits;  conditional E-value: 2
                 XXXXXXXX CS
       NUP50  17 dedeeeee 24 
                 +e+ e++e
  CDO72754.1 513 KESAESDE 520
                 12222122 PP

>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.4   4.3e-16   3.8e-12       5     117 ..     550     658 ..     547     662 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 4.3e-16
                 SSTTEEEEEEEEEEEEEEETTT...TEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-TTS-EEESTTESSEEEEEEEE-TTSSSEEEEEE CS
     Ran_BP1   5 gEEdEevlfkqraKLfrfdaek...kewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkplagsdrslvwtaadaadeeakleqla 100
                 gEEdE + ++ r K+++  ++k    +w + GvG +++ k+k++e  R+l+R   + k+ +N  +   m+    ++ d+++ +    +  ee+k + + 
  CDO72754.1 550 GEEDEITTHSIRSKVYKMIKDKdgkAQWGDMGVGVLRLKKHKETESRRMLLRNSSTGKITINFLLYAGMNT---SVNDKVVSF----IGHEEGKTTPYR 641
                 9****************9888766689*************************************9999864...344555555....899********* PP

                 EEESSHHHHHHHHHHHH CS
     Ran_BP1 101 ikfkkkeeadefkkkfe 117
                 i++k++ +a+e+k +++
  CDO72754.1 642 IRTKTAAQANELKAALD 658
                 *************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.50
# Mc/sec: 4032.37
//
Query:       CDO72755.1  [L=1190]
Description: hypothetical protein BN946_scf184994.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-11   44.3   0.5    4.6e-11   42.7   0.5    2.0  1  TIG         IPT/TIG domain
    2.7e-08   33.4   0.1     0.0019   18.5   0.0    2.8  2  Ank_3       Ankyrin repeat
    3.7e-08   33.8   0.0    6.7e-08   33.0   0.0    1.4  1  Ank_2       Ankyrin repeats (3 copies)
    3.4e-06   27.2   1.3     0.0014   18.9   0.1    2.5  2  Ank_5       Ankyrin repeats (many copies)
    3.9e-06   27.3   0.2    4.5e-05   23.9   0.2    2.3  2  Ank_4       Ankyrin repeats (many copies)
    6.9e-05   23.1   0.9       0.43   11.1   0.0    2.7  2  Ank         Ankyrin repeat
     0.0031   17.5   0.3        0.1   12.6   0.0    2.8  2  TIG_plexin  TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.5   1.8e-14   4.6e-11       1      85 []     580     665 ..     580     665 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.8e-14
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdg.aqlrsdnttftY 85 
                 P i  + P+sg+++gG  +t+ G nF   s ++++++ggt++t t+ +s++tlvc++Pp + +g++ v ++     +  + ++ ftY
  CDO72755.1 580 PRIHRLIPSSGPTYGGIEVTVLGANF-HPSMQLNCVFGGTASTSTQRWSDNTLVCVLPPSTtPGTVHVWFEGMPkEDDGTPPCLFTY 665
                 8899999*******************.*********************************977787777665545566666666665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.6e-07    0.0019       2      31 .]     774     802 ..     773     802 .. 0.95
   2 !   12.1   0.0   9.5e-05      0.24       1      27 [.     806     831 ..     806     834 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.6e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+t+LhlA ++  +++vkfLl+ +++d++a
  CDO72755.1 774 GQTLLHLATLARFPALVKFLLD-RNIDIDA 802
                 9*********************.9***985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.5e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 nG+t+L+lAa+sg+ + +++L++  ga
  CDO72755.1 806 NGCTALFLAALSGSGDCARALVD-GGA 831
                 79********************9.776 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.6e-11   6.7e-08      24      80 ..     771     834 ..     736     837 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.6e-11
       Ank_2  24 k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 +  g+t Lh+A+ +    +vk+Ll+        d++g t+L++Aa sg+ ++++ L++ ga ++
  CDO72755.1 771 TaSGQTLLHLATLARFPALVKFLLDRnididaRDQNGCTALFLAALSGSGDCARALVDGGAAMD 834
                 1589**********99999*****966776655599*********************9888655 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.5e-06    0.0065      16      53 ..     774     811 ..     768     814 .. 0.93
   2 !   18.9   0.1   5.3e-07    0.0014       1      54 [.     793     845 ..     793     846 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 g+t Lh+A  ++ + +v++Ll+r+ d++++d +G tal
  CDO72755.1 774 GQTLLHLATLARFPALVKFLLDRNIDIDARDQNGCTAL 811
                 88***********************************9 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.3e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 Ll++  +d++++d++g t+L +Aa  g+ d++r L++ ga+ ++ ++ G+t+ +
  CDO72755.1 793 LLDRN-IDIDARDQNGCTALFLAALSGSGDCARALVDGGAAMDVVNAAGKTPAE 845
                 78888.66777777777***********************************87 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0013       3.3      28      55 .]     768     794 ..     760     794 .. 0.88
   2 !   23.9   0.2   1.8e-08   4.5e-05      16      55 .]     789     827 ..     775     827 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
       Ank_4  28 naqdnrsGetalhiAakrgnveilklLl 55 
                  +   +sG+t+lh A +  ++  +k+Ll
  CDO72755.1 768 SRP-TASGQTLLHLATLARFPALVKFLL 794
                 454.899********************8 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.8e-08
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 lv++Ll++++di+a+ + +G tal  Aa+ g+ ++++ L+
  CDO72755.1 789 LVKFLLDRNIDIDAR-DQNGCTALFLAALSGSGDCARALV 827
                 599************.9*******************9996 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00017      0.43       2      31 ..     774     804 ..     773     805 .. 0.77
   2 !    9.9   0.2   0.00042       1.1       1      26 [.     806     832 ..     806     840 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                 SBBHHHHHH...HHTTHHHHHHHHTT.TSTTCBT CS
         Ank   2 GnTPLHlAa...tngkkriiklLLhG.Anlnald 31 
                 G T LHlA        +  +k+LL++  +++a+d
  CDO72755.1 774 GQTLLHLATlarF---PALVKFLLDRnIDIDARD 804
                 99*****764433...56******6438999998 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00042
                 TSBBHHHHHHHHTTHHHHHHHHTT.TS CS
         Ank   1 dGnTPLHlAatngkkriiklLLhG.An 26 
                 +G+T+L lAa  g+ +++++L++G A 
  CDO72755.1 806 NGCTALFLAALSGSGDCARALVDGgAA 832
                 7*********666667******74463 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1       0.1   2.7e+02      43      63 ..     225     245 ..     210     256 .. 0.80
   2 !   12.6   0.0     4e-05       0.1      24      54 ..     608     639 ..     587     646 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.1
  TIG_plexin  43 dnkvtCdtPkpeelppipegk 63 
                    +tC+tP+++++ + ++++
  CDO72755.1 225 TADITCATPPHTRVTACSSCQ 245
                 6789*******9998877766 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4e-05
  TIG_plexin  24 seklkCvFg.dleeseatvsdnkvtCdtPkpe 54 
                 s++l+CvFg ++++s+++ sdn++ C  P+++
  CDO72755.1 608 SMQLNCVFGgTASTSTQRWSDNTLVCVLPPST 639
                 789*****724555668899*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 7992.55
//
Query:       CDO72756.1  [L=381]
Description: hypothetical protein BN946_scf184994.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   14.6   0.2       0.15   12.0   0.0    2.5  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.1e-06      0.15       1      27 [.       9      37 ..       9      46 .. 0.84
   2 ?   -1.7   0.0      0.16   2.8e+03      11      25 ..     272     286 ..     270     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-06
  F-box-like  1 isrLPdEiLlqIFsyL.pps.dLlrlalV 27
                ++ LP+Ei+ +I +yL ++  +L+++al 
  CDO72756.1  9 MPELPPEIIDRITDYLhDDHeTLAACALA 37
                579*************6655589999985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.16
  F-box-like  11 qIFsyLppsdLlrla 25 
                 +I+s+L+   L  ++
  CDO72756.1 272 KILSQLSSPHLRKVT 286
                 79**99877787766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.47
# Mc/sec: 2419.71
//
Query:       CDO72757.1  [L=482]
Description: hypothetical protein BN946_scf184994.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-21   77.1   0.1    1.7e-21   76.6   0.1    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
     0.0024   17.9   0.0     0.0044   17.0   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   1.8e-25   1.7e-21     220     382 ..     223     398 ..     196     414 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.8e-25
       UDPGT 220 aellskaevwllrsyfdlefPrpllpnvefigglnckpakplpkeleefvqs....sGehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWrfdg 314
                 +e +++a +wl  +        pl+p  + i+ ln   +   + e+ +f+++    +Ge+ + ++S+Gsm  + + e + a  + + ++  ++l ++  
  CDO72757.1 223 SEAFEQARMWLGETGRSAYACGPLVP-HTSIAKLNEVGQTMKGAEIMKFLDTtlrkAGEKSLLYISFGSMYWPGSPETLWAFLDIVMELHIPFLLSHAA 320
                 56677777887655444444457777.666777777777777777766654322227********************9********************9 PP

       UDPGT 315 kkPstLaknt..........llvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeak 382
                  +   L               l +W+Pq  +L HP t+ F+tH+G n+v E+is GvPm++ P+ +dq+ N+ r++ +
  CDO72757.1 321 PRAAILPDEFvqkvqaygkgFLSPWAPQQTILEHPATGWFLTHGGHNSVVESISAGVPMIAWPFHADQPLNAVRISEV 398
                 666666555455557899999***************************************************999876 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.9e-07    0.0044      77     119 ..     361     399 ..     356     424 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.9e-07
                      EECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHH CS
  Glyco_tran_28_C  77 IsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekag 119
                      ++++G++++ E+ ++g+p+I  p+      +q  Na+ +++ +
       CDO72757.1 361 LTHGGHNSVVESISAGVPMIAWPFHA----DQPLNAVRISEVL 399
                      69**********************99....*******998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3389.26
//
Query:       CDO72758.1  [L=1259]
Description: hypothetical protein BN946_scf184994.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.35u 0.40s 00:00:01.75 Elapsed: 00:00:00.68
# Mc/sec: 5566.32
//
Query:       CDO72759.1  [L=408]
Description: hypothetical protein BN946_scf184994.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-51  173.9   0.0      1e-50  172.7   0.0    1.6  2  Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal 


Domain annotation for each model (and alignments):
>> Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.12   2.2e+03     150     209 ..       7      89 ..       6     111 .. 0.46
   2 !  172.7   0.0   5.8e-55     1e-50       4     217 ..     126     405 ..     123     408 .] 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.12
                  EEHHHHHHHHHHTT--GGGS-------TTSSSSSTSS-...........................TTEEEEEEEE-TSEEEEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C 150 lTtrElaellkeagidlakleeeeldnplgessgagki...........................egvkeaevelegktlkvavvnG 209
                  lT ++l + ++ ++  ++ +e+ +  +p +    a +i                           +++++ae++l      +  ++G
   CDO72759.1   7 LTLTDLNDFITPSQACIKPVEQVNKPEPQDPGAAATQIqvdssgayyeirangaastgqsgkstkQKLTTAEISL----NDCLACSG 89 
                  566666666666666665555544333333333333335555555555555555555554433333333333322....23444444 PP

  == domain 2  score: 172.7 bits;  conditional E-value: 5.8e-55
                  EEEE-HHHHHHGGGGGT--T......-S-HHHHHHHHHH.TT-SEEEETHHHHHHHHHHHHHHHHHHHHH..TS-SSEE----HHHHHHHHHH-GGGG CS
                  xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C   4 vvqvAPavrvalgeefglsv......aattgklvaalrk.lGfdkVfdtafgadltimeeasellerlee..eeklpmitScCPgwvkyvekkypell 92 
                  v+++AP++ ++++  +  ++       +  +++ a+  + lGf +V+dt f+++l+++e+a+e++er+e+  e klpm++S+CPgwv+y+ek++ e+l
   CDO72759.1 126 VISIAPQSLASFAASVSSTSsqnislLQILRRVRAFCTSvLGFAHVYDTTFARHLSLLEHAREFKERKERkgEGKLPMLASACPGWVCYAEKTHAEML 223
                  78889998888887665444310011334456666666789***************************777788************************ PP

                  GGB--B--HHHHHHHHHHTHHHHH.....GGEEEEEEES-SSHHHHHTSTT-BBTB...BSS-EEEEHHHHHHHHHHTT--G.GGS-------TTSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C  93 pnlssvkSPqqilgaliKkylaek.....ekivvVsimPCtaKklEaareefksag...rdvDavlTtrElaellkeagidl.akleeeeldnplges 181
                  p +s +kSPqq++g+l+K+ l+ k     ++i++V++mPC++KklEa+r++f ++    rdvD+vlTt El  l++e+g dl a +++e+l  p  + 
   CDO72759.1 224 PFISRTKSPQQVMGTLVKEWLGAKwgkrpDQIYHVTVMPCYDKKLEASRQDFYNDVyatRDVDCVLTTGELQLLMQEKGWDLsAPVPNENLP-PHPHP 320
                  ****************************************************9944567***********************5334444433.33333 PP

                  SSTSS-.............................................TTEEEEE....EEE-TSEE.EEEEEESHHHHHHHH CS
                  xxxxxx.............................................xxxxxxx....xxxxxxxx.xxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C 182 sgagki.............................................egvkeae....velegktl.kvavvnGlknikkll 217
                  s +  +                                              +++e++       +g  + + a+++G++n++++l
   CDO72759.1 321 STSLDVdtvlpellthpgsssgsylhslihnitsahpspsalslstrtirsADYEEHTltdgC-ASGAVVfRGAKCYGFRNLQNVL 405
                  333333567888899999999999999**9999999999999999988888666666632222.2355666*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2891.04
//
Query:       CDO72760.1  [L=404]
Description: hypothetical protein BN946_scf184994.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-14   54.2   0.7    2.5e-14   53.0   0.1    2.0  2  SNARE         SNARE domain
    4.7e-05   23.2   3.9    4.7e-05   23.2   3.9    2.5  2  Syntaxin      Syntaxin
    0.00027   21.3   0.6      0.069   13.5   0.0    2.6  3  Syntaxin_2    Syntaxin-like protein
  ------ inclusion threshold ------
      0.051   13.9   4.7      0.066   13.5   2.1    2.5  3  BLOC1_2       Biogenesis of lysosome-related organelles compl
        0.8    9.5   4.3       0.61    9.9   0.4    2.1  2  SKA1          Spindle and kinetochore-associated protein 1


Domain annotation for each model (and alignments):
>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.1   6.8e-18   2.5e-14       1      53 []     281     333 ..     281     333 .. 0.98
   2 ?   -2.8   0.1       1.8   6.5e+03      17      28 ..     384     395 ..     379     399 .. 0.62

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 6.8e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 +++D+ ++n+e++ +++e+a +eL+ a kyqk++++  ci+ll+l+i++l+++
  CDO72760.1 281 TLLDSVEYNIEQTATHMEDAVRELDTATKYQKNTGRRQCIFLLLLLIFGLIIV 333
                 689************************************************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHH CS
       SNARE  17 veraqkeLkkav 28 
                 v++a +++ +a+
  CDO72760.1 384 VREAVERMLRAR 395
                 556666666665 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   3.9   1.3e-08   4.7e-05       8     200 .]      82     280 ..      77     280 .. 0.80
   2 ?   -2.2   0.0      0.79   2.8e+03      53      76 ..     289     312 ..     283     319 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.3e-08
    Syntaxin   8 veeikkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLdksnkenekks..gegsavdRirksqtaaLrkklkevm 104
                 + ++k+ ++ +e +++ l+k + + +    ++ +   +++e+ ++ei+k  ++++a ++++    +++   +  g++   +  +k +  +L  k +e+ 
  CDO72760.1  82 ADQVKEILAGVEAKIATLDKLHAKHVLPGFSDRSAEEREIEAATTEITKDFRQCHALIQRIGSMPQHSFPPAkaGQSRHHELAAKNVQRGLAAKVQELS 180
                 5678888888999999999988776654444444378999*********************99888876444448888899999*************** PP

    Syntaxin 105 teynelrekireeyk.erieRr.levtGkevseeeieelietgesevflqkllqeq.rga.real.seieeRhkevlelekslkeLhqlFldmavLVEe 198
                   +++ +   +e+++ + i+ + l  ++  vs +    +   +e ++    + +++  ++ ++ + +e ++R +e+ e+ +s+  L +lF d+  LV  
  CDO72760.1 181 ATFRKKQRVYMEKMQgHAIKNQdLLAASGAVSLKGSAGMSALDE-DMEAAAASTDGvIVRqLAMVdNELQSRDRELTEIARSIASLAELFKDLQALVID 278
                 ****999999999883579****988888899888888877776.333444445553333233333899****************************99 PP

    Syntaxin 199 QG 200
                 QG
  CDO72760.1 279 QG 280
                 98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.79
    Syntaxin  53 eikkraesvkarLeaLdksnkene 76 
                 +i+++a +++  +++Ld++ k ++
  CDO72760.1 289 NIEQTATHMEDAVRELDTATKYQK 312
                 455555555555555555554443 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.6   1.3e+04      81      99 ..      42      60 ..      41      62 .. 0.78
   2 !   13.5   0.0   1.9e-05     0.069      11      98 ..      95     195 ..      85     198 .. 0.87
   3 !    5.5   0.1    0.0062        22       4      61 ..     254     312 ..     252     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.6
  Syntaxin_2 81 ealqeFqkiqrqyaekekq 99
                ++++++  +q++  e e+ 
  CDO72760.1 42 RVITNYDDAQNEGDEHERL 60
                5788999999999888885 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.9e-05
  Syntaxin_2  11 nvstleklvkq..Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds...........qqklqkekLkkdfkealqeFqkiqrqyaek 96 
                 ++ tl+kl  +  L    d     ++++  ++ei++ ++++ +l++++ +++++s              + k  +  L+ +++e+   F k qr y ek
  CDO72760.1  95 KIATLDKLHAKhvLPGFSDRSAEEREIEAATTEITKDFRQCHALIQRIGSMPQHSFPPakagqsrhhelAAKNVQRGLAAKVQELSATFRKKQRVYMEK 193
                 67888888888777777898888999**************************9994446788999999977888999********************** PP

  Syntaxin_2  97 ek 98 
                 ++
  CDO72760.1 194 MQ 195
                 98 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0062
  Syntaxin_2   4 nlqkinsnvstleklvkqLgtkk.dteelreklhelieeinelikktnellkklsqldn 61 
                 +l++i++++ +l +l+k+L+    d+  l ++++ +ie++ +  ++  + l   +++++
  CDO72760.1 254 ELTEIARSIASLAELFKDLQALViDQGTLLDSVEYNIEQTATHMEDAVRELDTATKYQK 312
                 799*****************995599999999999988888877777666666666555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7   6.1e+03      39      55 ..      85     101 ..      79     105 .. 0.46
   2 ?    4.4   0.1     0.013        45      50      88 ..     238     276 ..     224     283 .. 0.80
   3 ?   13.5   2.1   1.9e-05     0.066      34      92 ..     253     312 ..     238     314 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
     BLOC1_2  39 lkdvaaslekkleklne 55 
                 +k+++a++e+k+  l++
  CDO72760.1  85 VKEILAGVEAKIATLDK 101
                 33444444444444433 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.013
     BLOC1_2  50 leklnekyeelqpylqqidqiekqvteLeeavseLDeys 88 
                 + +l   ++elq+  +++ +i +++++L e+ + L + +
  CDO72760.1 238 VRQLAMVDNELQSRDRELTEIARSIASLAELFKDLQALV 276
                 567778889999999*************99998887665 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 1.9e-05
     BLOC1_2  34 ekykklkdvaaslekkleklnekyeelqpylqqid.qiekqvteLeeavseLDeyskeLE 92 
                 ++ +++++++asl++ +++l+++      +l++++ +ie++ t++e+av eLD+ +k ++
  CDO72760.1 253 RELTEIARSIASLAELFKDLQALVIDQGTLLDSVEyNIEQTATHMEDAVRELDTATKYQK 312
                 6778999999************************878*******************9876 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3      0.11   4.1e+02      22     113 ..      86     187 ..      78     208 .. 0.52
   2 ?    9.9   0.4   0.00017      0.61      11      69 ..     241     299 ..     236     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
                 ..XXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...... CS
        SKA1  22 kedlskieaevsaleellnk.....lkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskke...... 109
                 ke+l  +ea++ +l +l +k     + ++ +ee+e+   ++ ei + ++q + l +    +p+h     +a ++ + + + ++ ++   +k +      
  CDO72760.1  86 KEILAGVEAKIATLDKLHAKhvlpgFSDRSAEEREIEAATT-EITKDFRQCHALIQRIGSMPQHSFPPAKAGQSRHHELAAKNVQRGLAAKVQelsatf 183
                 56666666666666655443222225555555555555544.888888777777777777777754444444444444443333333333333334444 PP

                 XXXX CS
        SKA1 110 keee 113
                 ++++
  CDO72760.1 184 RKKQ 187
                 3333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                 .............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..... CS
        SKA1  11 lrainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek 69 
                 l  ++++ ++    l +i  ++ +l el ++l++ + ++ +++++++ +ie+++++ e 
  CDO72760.1 241 LAMVDNELQSRDRELTEIARSIASLAELFKDLQALVIDQGTLLDSVEYNIEQTATHMED 299
                 44566777777899**************************************9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1358  (0.0757432); expected 358.6 (0.02)
Passed bias filter:                      852  (0.0475208); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 2680.99
//
Query:       CDO72761.1  [L=874]
Description: hypothetical protein BN946_scf184994.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-24   84.7   0.2    1.1e-23   83.9   0.2    1.4  1  MS_channel  Mechanosensitive ion channel
     0.0081   15.6   0.6      0.018   14.6   0.6    1.6  1  EF-hand_1   EF hand
     0.0088   15.9   0.1      0.028   14.4   0.1    1.8  1  EF-hand_6   EF-hand domain
  ------ inclusion threshold ------
       0.13   11.8   0.5       0.33   10.5   0.2    1.9  2  EF-hand_5   EF hand


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.2   2.4e-27   1.1e-23       2     178 ..     535     711 ..     534     731 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 2.4e-27
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-.SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfek.pfkiGDlveigdieGtVediglrttkirtfdgrivtiPns 99 
                 +il  l +vv+ili+   l  ++++l++++G+l l+l+     ++++++++ii+lf k p+++GD+v ig+ ++tV+++ l++t + + +g  +  Pn 
  CDO72761.1 535 NILMSLYFVVVILIFAVALEAQLATLITSAGTLILGLSWLIGGSLAEVLTSIIFLFIKhPYDVGDRVAIGEKTYTVKEMRLLSTIFLDSNGCQTQAPNT 633
                 5677788999999999************************************9999877**************************************** PP

                 HHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEE.EEEEE-SSSEEEEEEEEEET CS
  MS_channel 100 slvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellv.vldefgdsslnfevrvfvkt 178
                  + t+ i+N +r s++++ ++++ v+y++ ++++e+++++++ +lk ++++ + ++ +v v+d +g++ ++++  + +k+
  CDO72761.1 634 WINTQLIHNIRR-SPQMSETFEFDVAYDTTFDQIERLRDVMLSFLKTERRDFQ-PAFDVyVVDIPGQEKMTLRADIKYKS 711
                 ************.**************************************97.55555156778888877777777766 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.6     4e-06     0.018       3      28 ..     486     511 ..     484     512 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                 + +F++fDkD +G ++++E   ++++
  CDO72761.1 486 DAAFAIFDKDMNGDVTRDEIEMACME 511
                 789****************9988875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   6.1e-06     0.028       4      26 ..     487     509 ..     484     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.1e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 +aF +fDkd +G ++++E+  a+
  CDO72761.1 487 AAFAIFDKDMNGDVTRDEIEMAC 509
                 79*****************8765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   5.2e+03       2      10 ..      76      84 ..      75      84 .. 0.79
   2 ?   10.5   0.2   7.4e-05      0.33       3      22 ..     487     506 ..     486     510 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
                HHHHHHH-S CS
   EF-hand_5  2 kdtFqaiDl 10
                ++ F++ D+
  CDO72761.1 76 NQSFRQYDA 84
                667****96 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.4e-05
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++F  +D+++ G ++++E +
  CDO72761.1 487 AAFAIFDKDMNGDVTRDEIE 506
                 58****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5901.12
//
Query:       CDO72762.1  [L=307]
Description: hypothetical protein BN946_scf184994.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-17   62.3   0.0    8.8e-17   61.5   0.0    1.4  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
    1.8e-08   33.7   0.0    7.5e-08   31.7   0.0    1.8  2  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   9.8e-21   8.8e-17       1      72 [.       2      76 ..       2      91 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 9.8e-21
                   EEEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSEC.....EEGGGCBES CS
  RNA_pol_A_bac  1 VeieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpge.....vtagdlkle 72
                   Veie+nt+vl DE++aHrlg+iplvs + +e + +++++  ++e  ++ + +el Lnv + +      +t+++l+++
     CDO72762.1  2 VEIETNTTVLPDEFIAHRLGMIPLVSTNCDEAMRYTRDC--TCEVRCQYCAIELVLNVACHDAgrtmdITSNMLEVV 76
                   89*************************************..8********************988888999998875 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.084   7.5e+02      44      58 ..       2      16 ..       1      20 [. 0.86
   2 !   31.7   0.0   8.4e-12   7.5e-08      30      69 .]      70     216 ..      40     216 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.084
                xxxxxxxxxxxxxxx RF
   RNA_pol_L 44 levetdgslkPeeal 58
                 e+et+ ++ P+e +
  CDO72762.1  2 VEIETNTTVLPDEFI 16
                69*******999976 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 8.4e-12
                 x.................................................................xx............................... RF
   RNA_pol_L  30 a.................................................................pv............................... 32 
                 +                                                                 +v                               
  CDO72762.1  70 SnmlevvpttrpgfggfddgdgseelakrvenfghpvgkgmiaerlfigpnqadpakehskwspcaAVgfeydphnklrhttywyeynareewplsena 168
                 355555555555555555555555555555555554444444444444444444444444444333004444444444444444444444444445555 PP

                 ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  33 ...........vkvntdkdklilevetdgslkPeealkeAlkiLkekl 69 
                            +++n++++k++++vetdgsl P+e++ ++l+ L+ kl
  CDO72762.1 169 keeepprddlpFDYNAKPEKFYMDVETDGSLGPQEVVMKGLQELQTKL 216
                 555555555556999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2298.37
//
Query:       CDO72763.1  [L=539]
Description: hypothetical protein BN946_scf184994.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-37  128.1   0.0    3.1e-36  124.8   0.0    2.3  2  Pro-kuma_activ  Pro-kumamolisin, activation domain
    0.00016   21.0   0.2    0.00025   20.4   0.2    1.2  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   3.5e-40   3.1e-36       2     142 .]      37     177 ..      36     177 .. 0.99
   2 ?    0.4   0.0     0.081   7.2e+02      42      75 ..     385     418 ..     364     431 .. 0.87

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 3.5e-40
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaq 96 
                     g+++ g+a+++t l++r++L + ++  le++l dvs+p+sp+yg+hl++eev+  +ap++e+++aV  wL ++gi a+  ++ ++wi fs+ v++
      CDO72763.1  37 GFMHSGPASPDTILNLRLALVPGDIPGLERALYDVSSPSSPQYGQHLSKEEVEHFVAPKPESLAAVYLWLAEHGIDAKTLTPAGDWIGFSIAVEK 131
                     68999****************************************************************************************** PP

  Pro-kuma_activ  97 verllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     +++ll+t+f+ ++h++++ + +r+ +y +P++l+++++++hpt +f
      CDO72763.1 132 ASELLNTNFSVFTHQDTGITSIRTLSYAIPADLRDHIQLVHPTVSF 177
                     *******************************************987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.081
  Pro-kuma_activ  42 pnygkhltaeevaelfapseeaidaVrnwLessg 75 
                     p+ g  lt+  + ++fa  + + ++V ++L + g
      CDO72763.1 385 PETGASLTSGGFSNYFARPQYQNTSVPAYLSKLG 418
                     667888999*********************9877 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   2.8e-08   0.00025      81     263 ..     296     472 ..     288     493 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.8e-08
                   SSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHH...HHHHHH.CCT-EEEEE--SS-T-HHEEE- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  81 ekngvapgakilsvkvldtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsieal...ainravnkkgvlvviSaGNngktgsslqa 174
                   + +g+a g+ +  ++v+ +sg++m   ++++  + ++a   ++v+  s+ e+ ++++    ++ +    ++   + +++  v+S G     +     
    CDO72763.1 296 YTVGLASGVPVHFIQVGEESGHNMWL-DTVTYLLGQSAP--PHVVTSSYAEPEDNGSQAFATNPAlrpTYRSQAHLHDIASVTSVGATTGFAP---E 386
                   56667777777777777777776643.555544555544..4566666665444444443333334565555555677777777777774444...3 PP

                   TTCEECTTTSTTCEEEEEESTTSSB-TT--B-TT.............-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 175 gspvgtpstsknvitvgayttegkiapfSsrGpssd......gklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAllls 263
                   +    t +++ n+ +   y++ +  a+ S+ G++ +      g++ pd++a G++i   w+  +          +++GTS++sP  a+++All +
    CDO72763.1 387 TGASLTSGGFSNYFARPQYQNTSVPAYLSKLGSEYAgkfsptGRAFPDVSAQGVEIEYIWQGAE---------WLFTGTSASSPIFASIIALLND 472
                   44444455577777777777888888888888888866666677779********999999999.........489****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4072.86
//
Query:       CDO72764.1  [L=512]
Description: Glycosyltransferase Family 1 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-21   76.4   0.0    3.3e-21   75.7   0.0    1.3  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
      0.007   16.4   0.0      0.018   15.0   0.0    1.7  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   3.6e-25   3.3e-21     220     381 ..     252     427 ..     226     436 .. 0.82

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 3.6e-25
       UDPGT 220 aellskaevwllrsyfdlefPrpllpnvefigglnckpakplpkeleef....vqssGehGvvvfSlGsmvsei.peekanaiAsaLakipqkvlWrfd 313
                 +e ++k+ +wl  +  ++    pllp     ++ n +++   + e+ ef    +++sGe+ + ++S+Gs+  ++ + ek+    + + ++  ++l ++ 
  CDO72764.1 252 SEAVEKVRAWLSETGRPVYVCGPLLPR-GSEAESNETKQSNKGAEIMEFlettLKTSGEQSLLYISFGSIFWPLkSPEKLWGFLDVVMELNIPFLLSHA 349
                 677888888888888888888899994.4455555556666666665551111678***************987345779999999999******9976 PP

       UDPGT 314 g....kkPstLaknt......llvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmea 381
                      + P+ + +         l +W Pq  +L HP t+ FvtH G n+v E+i+ GvPm++ P+ +dq+ N+ r++ 
  CDO72764.1 350 SpfadTLPDEIVNKVkaygkgFLSQWSPQQSILEHPATGWFVTHCGHNSVVESITAGVPMIAWPFNADQPLNAVRISE 427
                 6444488888877778899999***************************************************99875 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-06     0.018      77     118 ..     391     428 ..     385     462 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-06
                      EECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHH CS
  Glyco_tran_28_C  77 IsRAGagtiaEllalgkplIlvplpeaaenhqdnNakeleka 118
                      +++ G++++ E+  +g+p+I  p+      +q  Na+ +++ 
       CDO72764.1 391 VTHCGHNSVVESITAGVPMIAWPFNA----DQPLNAVRISEV 428
                      8************************9....******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3492.30
//
Query:       CDO72765.1  [L=383]
Description: hypothetical protein BN946_scf184994.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-30  105.0   0.1      4e-14   52.6   0.0    2.1  2  LETM1     LETM1-like protein


Domain annotation for each model (and alignments):
>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   2.2e-18     4e-14       3     119 ..     138     253 ..     136     269 .. 0.90
   2 !   50.8   0.0   7.9e-18   1.4e-13     172     260 ..     270     359 ..     258     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2.2e-18
       LETM1   3 pkikkelkhyvkGtkllfadvkisvkllvkllk.gkeLsrrEreqlkrttaDllrlvPfsvfiivPfaelllpvllklFPnlLpstFeskkqkeeklkk 100
                 +++k+++k y++G+kl+ +  k ++ +  ++++ g  Lsr E++ + +  +D l+l+Pf+++iiv  ae ++p+++ + P lLpst   ++qke    k
  CDO72765.1 138 HQAKELFKFYWNGIKLINTHRKRVRDINARVKAgGPPLSRWETRFIANYKRDALKLIPFALIIIV--AEEAIPLVVIYTPFLLPSTCLLPSQKERIDAK 234
                 67899****************************5666***************************8..9******************************* PP

       LETM1 101 rlkarlevakfLqetlees 119
                 r+++++  a+ ++   e +
  CDO72765.1 235 RREKQQTFAESMKPVFEGV 253
                 ******9999998766544 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 7.9e-18
       LETM1 172 srkqlkalckllslqpfgtdnllryrlrkklreikedDkaikre.GvdsLseeeLqeacrsRGlraaglseeelreqLeqWlelslkkkv 260
                 + + l++ + +lsl++fg+  ++ +r++k+l+ i +dD ++ re   + Ls ee++ea ++RG+ ++gls++++r+ L++Wl+ ++++++
  CDO72765.1 270 DGSALVSYNGVLSLSTFGPPLMRLRRIKKHLQAIAADDALLFREnAGERLSAEEVREALEERGIVTVGLSTDAMRDRLRWWLSHTSQPTD 359
                 556788888999********************************8899**********************************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2873.43
//
Query:       CDO72766.1  [L=1361]
Description: hypothetical protein BN946_scf184994.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-36  120.1  59.0    1.4e-05   24.9   0.5   19.2 19  TPR_2        Tetratricopeptide repeat
    9.5e-36  120.2  22.4    1.2e-05   24.8   0.1   15.1 15  TPR_1        Tetratricopeptide repeat
    1.1e-26   93.2  84.0    2.1e-08   34.7   3.8   14.7 16  TPR_16       Tetratricopeptide repeat
    2.8e-26   90.0  86.2    3.9e-05   24.1   1.1   20.4 20  TPR_14       Tetratricopeptide repeat
    4.1e-26   89.0  32.8    9.4e-05   22.3   0.1   16.1 17  TPR_8        Tetratricopeptide repeat
    2.2e-22   78.4  27.5     0.0046   16.6   1.5   15.9 17  TPR_11       TPR repeat
    6.7e-19   68.0  57.4    0.00027   21.2   0.7   13.2 14  TPR_12       Tetratricopeptide repeat
    7.2e-18   64.9  51.6    5.8e-05   23.5   0.0   13.7 15  TPR_19       Tetratricopeptide repeat
    1.1e-13   50.5  27.6      0.043   14.2   0.1   15.1 17  TPR_17       Tetratricopeptide repeat
    5.4e-13   48.0  29.6        0.6   10.3   0.2   13.7 15  TPR_7        Tetratricopeptide repeat
    7.2e-10   38.9  53.0    2.6e-05   24.3   0.2   11.0 13  TPR_9        Tetratricopeptide repeat
    1.3e-09   38.0  39.9       0.11   13.2   0.3   14.8 15  TPR_6        Tetratricopeptide repeat
    2.7e-09   37.1  13.8     0.0075   16.5   0.0    8.5  9  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
    4.1e-05   23.4   6.4        1.5    8.5   0.1    6.0  6  RPN7         26S proteasome subunit RPN7
     0.0098   16.0   0.1       0.04   14.1   0.1    2.1  1  TPR_22       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.04   13.9   1.5       0.29   11.1   1.3    2.5  2  PhnG         Phosphonate metabolism protein PhnG
      0.082   11.8   3.6        7.2    5.4   0.0    3.6  3  NARP1        NMDA receptor-regulated protein 1
       0.25   11.1   2.6        4.2    7.1   0.0    3.9  4  TOM20_plant  Plant specific mitochondrial import receptor sub
        1.1    8.4   8.4         17    4.5   0.0    5.0  6  FAT          FAT domain
        1.8    9.0  22.8        2.8    8.3   0.0    8.1 10  TPR_20       Tetratricopeptide repeat
          2    8.4  36.0        0.3   11.0   0.3    9.5  9  TPR_10       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.1      0.83   7.1e+02       8      34 .]      12      38 ..       9      38 .. 0.88
   2 !   23.1   0.3   5.7e-08   4.8e-05       3      33 ..      41      71 ..      39      72 .. 0.93
   3 ?    4.4   0.3     0.059        50       2      31 ..      94     123 ..      93     125 .. 0.92
   4 !    7.7   0.1     0.005       4.3       3      30 ..     384     411 ..     382     414 .. 0.88
   5 !   17.2   0.0   4.6e-06    0.0039       3      34 .]     467     498 ..     465     498 .. 0.95
   6 ?   -0.9   0.0       2.8   2.4e+03       8      27 ..     510     529 ..     510     530 .. 0.89
   7 ?    2.7   0.1       0.2   1.7e+02       1      15 [.     544     558 ..     544     576 .. 0.75
   8 !    8.4   0.1    0.0031       2.6      16      33 ..     598     615 ..     598     616 .. 0.90
   9 ?    5.8   0.1      0.02        17       2      29 ..     668     695 ..     667     697 .. 0.90
  10 !   24.9   0.5   1.6e-08   1.4e-05       3      34 .]     703     734 ..     701     734 .. 0.95
  11 ?    5.6   0.0     0.024        21       5      32 ..     739     766 ..     735     768 .. 0.87
  12 ?    3.7   0.0     0.096        82       3      18 ..     771     786 ..     770     788 .. 0.90
  13 ?    3.5   0.2      0.11        92      18      34 .]     933     949 ..     930     949 .. 0.90
  14 !    8.3   0.3    0.0032       2.7       1      34 []     983    1016 ..     983    1016 .. 0.94
  15 !    8.0   0.0    0.0041       3.5       1      30 [.    1017    1046 ..    1017    1049 .. 0.92
  16 ?    4.7   0.0     0.045        38       1      29 [.    1097    1125 ..    1097    1128 .. 0.93
  17 ?    6.2   0.0     0.015        13       3      28 ..    1146    1171 ..    1144    1176 .. 0.88
  18 !   10.9   0.7   0.00048      0.41       8      28 ..    1197    1217 ..    1190    1221 .. 0.90
  19 ?   -2.3   0.0       8.1   6.9e+03      20      32 ..    1331    1343 ..    1328    1343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.83
       TPR_2  8 GlayyklgdyeeAleafekAleldPnn 34
                ++ +++++d e+A++a   +le++P+n
  CDO72766.1 12 AREALAKQDNEKARDAALGVLEYEPDN 38
                566788999****************97 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 5.7e-08
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPn 33
                a+  lGlay++l++ e+ ++a++kA+el+P+
  CDO72766.1 41 ANVFLGLAYLRLDEVEKSEQAYRKAIELNPD 71
                56679*************************7 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.059
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 ++l +l++++++++d  +++ea +k +el 
  CDO72766.1  94 KGLQALARIHAAANDAVKCAEAVQKLIELR 123
                 57899**********************995 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.005
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 a+   +++y+  gdye A++  e  lel
  CDO72766.1 384 AHRVVAKLYELEGDYENAIKVAESGLEL 411
                 6777899**************9999887 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 4.6e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 al+++G ++ +++++e+A+e+f k ++l P++
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGKIIRLKPDD 498
                 899***************************96 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 2.8
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 +++++ +g+++ A e ++++
  CDO72766.1 510 AWCAAMSGQLQAATEELREV 529
                 78999*********999987 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.2
       TPR_2   1 aealynlGlayyklg 15 
                 a++++ lG++y+++g
  CDO72766.1 544 ARCWWKLGRCYWEMG 558
                 6899*******9988 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.0031
       TPR_2  16 dyeeAleafekAleldPn 33 
                 d+++A ++f+kA eldP+
  CDO72766.1 598 DPKRASKCFQKAFELDPR 615
                 5789*************6 PP

  == domain 9  score: 5.8 bits;  conditional E-value: 0.02
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                  a+ + G + + + +y  A+eaf+ Al+
  CDO72766.1 668 WAWKAVGAVELTRRNYPAAIEAFQIALR 695
                 58999999999*************9996 PP

  == domain 10  score: 24.9 bits;  conditional E-value: 1.6e-08
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  + +lG+ay k+g+y+ A +a+e+A eldP++
  CDO72766.1 703 SWLRLGEAYSKAGRYAAAFKALERARELDPED 734
                 599***************************86 PP

  == domain 11  score: 5.6 bits;  conditional E-value: 0.024
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                 y +G++ +++g +ee ++af+  l+  P
  CDO72766.1 739 YFIGEVQRQMGAFEESIRAFRSILASRP 766
                 889*****************98887666 PP

  == domain 12  score: 3.7 bits;  conditional E-value: 0.096
       TPR_2   3 alynlGlayyklgdye 18 
                 +l+ lG++y+ lg++e
  CDO72766.1 771 VLHSLGQSYLDLGRFE 786
                 5889**********98 PP

  == domain 13  score: 3.5 bits;  conditional E-value: 0.11
       TPR_2  18 eeAleafekAleldPnn 34 
                 + A++ f++A++l+P n
  CDO72766.1 933 QHAVAQFKEAIRLEPAN 949
                 5799***********86 PP

  == domain 14  score: 8.3 bits;  conditional E-value: 0.0032
       TPR_2    1 aealynlGlayyklgdyeeAleafekAleldPnn 34  
                  a  + nlGl y++  d + A eaf kA  ldP++
  CDO72766.1  983 AATWTNLGLFYLHHEDRQLANEAFYKAQTLDPDY 1016
                  5789****************************85 PP

  == domain 15  score: 8.0 bits;  conditional E-value: 0.0041
       TPR_2    1 aealynlGlayyklgdyeeAleafekAlel 30  
                  a a+  +Gl++  +g+  eA+++fe A  l
  CDO72766.1 1017 ALAWIGQGLVATLNGHDREARALFEHATTL 1046
                  689***********************9876 PP

  == domain 16  score: 4.7 bits;  conditional E-value: 0.045
       TPR_2    1 aealynlGlayyklgdyeeAleafekAle 29  
                  a+al+  Gl++++ g+   A+++f +A++
  CDO72766.1 1097 ARALHLFGLVCERVGHVTLAIDLFSRAIA 1125
                  6899999********************97 PP

  == domain 17  score: 6.2 bits;  conditional E-value: 0.015
       TPR_2    3 alynlGlayyklgdyeeAleafekAl 28  
                  a+ nl+++ +   dye Ale ++ A 
  CDO72766.1 1146 AHVNLARLRLSTADYEGALESYQVAT 1171
                  899*******************9775 PP

  == domain 18  score: 10.9 bits;  conditional E-value: 0.00048
       TPR_2    8 GlayyklgdyeeAleafekAl 28  
                  Gla+ klg+++eAl++fe+A 
  CDO72766.1 1197 GLAHSKLGQLAEALALFEAAM 1217
                  99*****************97 PP

  == domain 19  score: -2.3 bits;  conditional E-value: 8.1
       TPR_2   20 AleafekAleldP 32  
                  Al++ +kA+ l P
  CDO72766.1 1331 ALRLAQKAVMLTP 1343
                  9999*****9987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   2.9e-08   2.5e-05       7      33 ..      45      71 ..      41      72 .. 0.97
   2 ?    5.2   0.1     0.023        19       8      30 ..     389     411 ..     383     413 .. 0.84
   3 !   11.3   0.0   0.00028      0.24       3      34 .]     467     498 ..     465     498 .. 0.94
   4 !    8.5   0.1    0.0021       1.8      17      33 ..     599     615 ..     598     616 .. 0.89
   5 !    8.0   0.0     0.003       2.6       1      29 [.     667     695 ..     667     697 .. 0.93
   6 !   24.8   0.1   1.5e-08   1.2e-05       3      34 .]     703     734 ..     702     734 .. 0.96
   7 ?    5.6   0.0     0.017        15       5      31 ..     739     765 ..     735     768 .. 0.84
   8 ?    3.1   0.0      0.11        96       4      18 ..     772     786 ..     771     788 .. 0.88
   9 ?    1.1   0.1      0.47     4e+02      19      34 .]     934     949 ..     933     949 .. 0.86
  10 ?   -1.7   0.0       3.5     3e+03      23      34 .]     971     982 ..     970     982 .. 0.85
  11 !   13.5   0.2   5.7e-05     0.048       1      34 []     983    1016 ..     983    1016 .. 0.97
  12 ?   -0.4   0.0       1.4   1.2e+03       1      29 [.    1017    1045 ..    1017    1047 .. 0.89
  13 ?    1.0   0.0      0.51   4.3e+02       8      29 ..    1104    1125 ..    1097    1128 .. 0.83
  14 ?    2.8   0.0      0.13   1.1e+02       3      25 ..    1146    1168 ..    1145    1173 .. 0.93
  15 !    8.7   0.2    0.0018       1.6       8      27 ..    1197    1216 ..    1190    1219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.9e-08
                HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnPn 33
                lG+ay++l + ++ +++y+kA+elnP+
  CDO72766.1 45 LGLAYLRLDEVEKSEQAYRKAIELNPD 71
                8*************************8 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.023
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALel 30 
                 + +y   g+y+ A++  e  Lel
  CDO72766.1 389 AKLYELEGDYENAIKVAESGLEL 411
                 679***********977766665 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 al  +G ++++ +++++A e + k ++l P++
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGKIIRLKPDD 498
                 8899**************************96 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHSTT CS
       TPR_1  17 ydeAleyyekALelnPn 33 
                 ++ A ++++kA el+P 
  CDO72766.1 599 PKRASKCFQKAFELDPR 615
                 68899***********5 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a a++  G++ +   +y  A+e+++ AL+
  CDO72766.1 667 AWAWKAVGAVELTRRNYPAAIEAFQIALR 695
                 789999*******************9996 PP

  == domain 6  score: 24.8 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++ +lG ay k g+y  A ++ e+A el+P++
  CDO72766.1 703 SWLRLGEAYSKAGRYAAAFKALERARELDPED 734
                 69****************************86 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.017
                 HHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALeln 31 
                 y +G + +++g ++e + +++  L  +
  CDO72766.1 739 YFIGEVQRQMGAFEESIRAFRSILASR 765
                 779*****************9877655 PP

  == domain 8  score: 3.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHHTT-HH CS
       TPR_1   4 lynlGnayfklgkyd 18 
                 l  lG+ y+ lg+++
  CDO72766.1 772 LHSLGQSYLDLGRFE 786
                 5689**********8 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHSTTH CS
       TPR_1  19 eAleyyekALelnPnn 34 
                  A++ +++A++l+P n
  CDO72766.1 934 HAVAQFKEAIRLEPAN 949
                 58999********965 PP

  == domain 10  score: -1.7 bits;  conditional E-value: 3.5
                 HHHHHHHHSTTH CS
       TPR_1  23 yyekALelnPnn 34 
                  y +ALe++ +n
  CDO72766.1 971 SYIRALEVDSKN 982
                 589******887 PP

  == domain 11  score: 13.5 bits;  conditional E-value: 5.7e-05
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1    1 akalynlGnayfklgkydeAleyyekALelnPnn 34  
                  a ++ nlG+ y++ ++ + A e++ kA +l+P++
  CDO72766.1  983 AATWTNLGLFYLHHEDRQLANEAFYKAQTLDPDY 1016
                  679*****************************97 PP

  == domain 12  score: -0.4 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1    1 akalynlGnayfklgkydeAleyyekALe 29  
                  a a+ + G++   +g   eA + +e A +
  CDO72766.1 1017 ALAWIGQGLVATLNGHDREARALFEHATT 1045
                  679*****************999998865 PP

  == domain 13  score: 1.0 bits;  conditional E-value: 0.51
                  HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1    8 GnayfklgkydeAleyyekALe 29  
                  G+++ + g    A++ +++A+ 
  CDO72766.1 1104 GLVCERVGHVTLAIDLFSRAIA 1125
                  777778888889********97 PP

  == domain 14  score: 2.8 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1    3 alynlGnayfklgkydeAleyye 25  
                  a+ nl+ + ++  +y+ Ale y+
  CDO72766.1 1146 AHVNLARLRLSTADYEGALESYQ 1168
                  7899999999999*********8 PP

  == domain 15  score: 8.7 bits;  conditional E-value: 0.0018
                  HHHHHHTT-HHHHHHHHHHH CS
       TPR_1    8 GnayfklgkydeAleyyekA 27  
                  G+a+ klg++ eAl+ +e A
  CDO72766.1 1197 GLAHSKLGQLAEALALFEAA 1216
                  99***************988 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   6.2   4.7e-09     4e-06       1      67 [.       9      72 ..       9      73 .. 0.97
   2 ?   -2.1   2.4       7.8   6.7e+03       2      45 ..      98     141 ..      97     142 .. 0.88
   3 ?   -0.6   0.1       2.5   2.2e+03      36      58 ..     384     406 ..     383     415 .. 0.69
   4 !   14.6   0.0   4.6e-05     0.039      15      68 .]     449     499 ..     446     499 .. 0.92
   5 !   13.7   0.5   8.9e-05     0.076      10      61 ..     478     530 ..     474     535 .. 0.91
   6 ?    1.0   0.0      0.79   6.8e+02      31      46 ..     541     556 ..     530     565 .. 0.82
   7 !    7.2   0.3    0.0095       8.1      12      51 ..     598     634 ..     598     635 .. 0.90
   8 !   34.7   3.8   2.4e-11   2.1e-08       7      66 ..     677     733 ..     672     734 .. 0.93
   9 !    8.0   0.0    0.0053       4.5       7      52 ..     745     787 ..     741     789 .. 0.91
  10 ?    3.5   0.2      0.13   1.1e+02      16      43 ..     935     959 ..     933     962 .. 0.94
  11 !    9.0   0.3    0.0026       2.2      18      67 ..     970    1016 ..     969    1017 .. 0.93
  12 !   11.4   1.2   0.00046       0.4      21      60 ..    1004    1043 ..     998    1051 .. 0.88
  13 !    7.3   0.1    0.0089       7.6      20      62 ..    1086    1125 ..    1085    1132 .. 0.89
  14 !   11.4   0.6   0.00044      0.38      13      68 .]    1120    1178 ..    1118    1178 .. 0.93
  15 !   16.2   6.0   1.5e-05     0.012       2      66 ..    1149    1222 ..    1148    1224 .. 0.92
  16 ?   -1.7   0.5       5.8     5e+03      15      45 ..    1330    1357 ..    1322    1359 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.7e-09
      TPR_16  1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                l++ar+al+ +d ++A+ a+  +l++    Pd++ A  +lg+a+lr+ ++++ +++yr+a++  pd 
  CDO72766.1  9 LKAAREALAKQDNEKARDAALGVLEYE---PDNYNANVFLGLAYLRLDEVEKSEQAYRKAIELNPDQ 72
                689************************...*********************************9996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.8
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaal 45 
                 alar++++a+d  + a+a + ++++++++ +  +++l+ ++a+l
  CDO72766.1  98 ALARIHAAANDAVKCAEAVQKLIELRRRTDLGNRMQLAEALALL 141
                 68999999999999999999999999999999999999998886 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.5
      TPR_16  36 AllllgdaalrqgrlaeAaalyr 58 
                 A+   + ++   g+++ A+ + +
  CDO72766.1 384 AHRVVAKLYELEGDYENAIKVAE 406
                 56666777777788888876555 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 4.6e-05
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 +A++  + +l  d   Pd+  Al+++g ++ +++r+++Aa+l+ + +r  pd++
  CDO72766.1 449 RALRIIDDVLTED---PDNISALMARGFVLQHAKRWEDAAELFGKIIRLKPDDA 499
                 6888888999999...*************************9999999999985 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 8.9e-05
      TPR_16  10 agdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraal 61 
                 a++++dAa+++   +++ p++ d a +A  + +++a+  g l++A + +r+ +
  CDO72766.1 478 AKRWEDAAELFGKIIRLKPDDADiASRAKEEHAWCAAMSGQLQAATEELREVI 530
                 789***************99999**********************88887765 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.79
      TPR_16  31 PdaaeAllllgdaalr 46 
                  d a+ ++ lg+++++
  CDO72766.1 541 EDKARCWWKLGRCYWE 556
                 5689**********96 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0095
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51 
                 d+ +A + ++ a ++d   P+ aeA+  l++ +++ g+++
  CDO72766.1 598 DPKRASKCFQKAFELD---PREAEAARRLAEGFAEEGEWD 634
                 567899**********...***********9999999886 PP

  == domain 8  score: 34.7 bits;  conditional E-value: 2.4e-11
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  l +++y++A++a+++al+      d++ ++l lg+a+ ++gr+a+A  ++++a + +p 
  CDO72766.1 677 ELTRRNYPAAIEAFQIALRTE---VDDHMSWLRLGEAYSKAGRYAAAFKALERARELDPE 733
                 6789*****************...******************************999996 PP

  == domain 9  score: 8.0 bits;  conditional E-value: 0.0053
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                  ++ g +++ ++a++  l+++   P     l  lg+++l +gr+++
  CDO72766.1 745 QRQMGAFEESIRAFRSILASR---PHELGVLHSLGQSYLDLGRFEL 787
                 578999***************...*******************975 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.13
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgda 43 
                 A+a++++a+++    P++ +++ +lg+a
  CDO72766.1 935 AVAQFKEAIRLE---PANDAFWVALGNA 959
                 899*********...***********87 PP

  == domain 11  score: 9.0 bits;  conditional E-value: 0.0026
      TPR_16   18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67  
                  + + +al+ d   + +a+ + +lg+ +l++ + ++A +++ +a++ +pd+
  CDO72766.1  970 HSYIRALEVD---SKNAATWTNLGLFYLHHEDRQLANEAFYKAQTLDPDY 1016
                  578899999*...************************9999*****9997 PP

  == domain 12  score: 11.4 bits;  conditional E-value: 0.00046
      TPR_16   21 eaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60  
                  ea+ k++  +Pd a A+ + g++a  +g   eA+al++ a
  CDO72766.1 1004 EAFYKAQTLDPDYALAWIGQGLVATLNGHDREARALFEHA 1043
                  6788899999**************************9855 PP

  == domain 13  score: 7.3 bits;  conditional E-value: 0.0089
      TPR_16   20 leaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62  
                  l+++ k++   P +a+Al l g+++ r g +++A++l+ +a++
  CDO72766.1 1086 LDRYCKQR---PKDARALHLFGLVCERVGHVTLAIDLFSRAIA 1125
                  67888999...*****************************974 PP

  == domain 14  score: 11.4 bits;  conditional E-value: 0.00044
      TPR_16   13 yddAaaaleaalkrdpssPd....aaeAllllgdaalrqgrlaeAaalyraalraapdap 68  
                  + +A+a+leaa +   ++P+       A+ +l++++l   ++++A++ y+ a +  p +p
  CDO72766.1 1120 FSRAIAVLEAAYEET-EDPVierqFTIAHVNLARLRLSTADYEGALESYQVATGLLPEEP 1178
                  679************.88889999***************************999999876 PP

  == domain 15  score: 16.2 bits;  conditional E-value: 1.5e-05
      TPR_16    2 alaraalragdyddAaaaleaalkrdpssPd.........aaeAllllgdaalrqgrlaeAaalyraalraapd 66  
                  +lar++l   dy+ A++ ++ a+ + p++P           a+ +l++g+a+ ++g laeA+al++aa + a+d
  CDO72766.1 1149 NLARLRLSTADYEGALESYQVATGLLPEEPTegdaeakvlLAQCQLGSGLAHSKLGQLAEALALFEAAMATAAD 1222
                  699***********************88887************************************8766655 PP

  == domain 16  score: -1.7 bits;  conditional E-value: 5.8
      TPR_16   15 dAaaaleaalkrdpssPdaaeAllllgdaal 45  
                   A+++++ a+ +    P +++A+ +l+ ++ 
  CDO72766.1 1330 GALRLAQKAVMLT---PWDRRAWEALAFVRS 1357
                  6999999999999...999999999998865 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.93   7.9e+02       5      42 ..       9      46 ..       5      47 .. 0.86
   2 !   21.0   0.5   4.7e-07    0.0004       7      42 ..      45      80 ..      39      82 .. 0.90
   3 ?    2.2   1.1      0.49   4.2e+02       3      43 ..      95     136 ..      93     137 .. 0.81
   4 ?    0.5   0.0       1.8   1.5e+03      23      43 ..     319     339 ..     317     340 .. 0.87
   5 ?    5.0   0.1     0.061        52       6      30 ..     387     411 ..     383     421 .. 0.81
   6 ?    1.9   0.0      0.63   5.3e+02      19      42 ..     449     472 ..     445     474 .. 0.87
   7 !   10.6   0.1     0.001      0.89       3      37 ..     467     501 ..     465     505 .. 0.93
   8 ?    2.2   0.0       0.5   4.3e+02       2      37 ..     545     582 ..     544     589 .. 0.79
   9 !   11.2   0.2   0.00065      0.55      15      43 ..     597     625 ..     588     626 .. 0.92
  10 !   16.6   0.4   1.2e-05    0.0098       2      43 ..     668     709 ..     667     710 .. 0.96
  11 !   24.1   1.1   4.5e-08   3.9e-05       4      37 ..     704     737 ..     701     744 .. 0.92
  12 !    8.9   0.0    0.0035         3       7      43 ..     741     777 ..     737     778 .. 0.90
  13 !    8.7   0.1    0.0041       3.5      18      42 ..     933     957 ..     907     959 .. 0.86
  14 ?    4.0   0.3      0.13   1.1e+02       3      39 ..     985    1021 ..     983    1026 .. 0.90
  15 ?    2.4   0.5      0.44   3.8e+02       6      42 ..    1022    1058 ..    1017    1060 .. 0.82
  16 ?    3.4   0.0      0.21   1.8e+02      20      40 ..    1082    1102 ..    1073    1105 .. 0.85
  17 ?    2.6   0.1      0.38   3.3e+02       8      30 ..    1104    1126 ..    1098    1139 .. 0.71
  18 ?    2.1   0.1      0.55   4.7e+02       7      44 .]    1150    1192 ..    1145    1192 .. 0.79
  19 !   10.1   0.3    0.0014       1.2       9      39 ..    1198    1228 ..    1193    1242 .. 0.84
  20 !   11.3   0.2   0.00059       0.5      11      43 ..    1322    1354 ..    1306    1355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.93
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaeawllla 42
                l++a+  la +d ++A++++  +l+  Pd+  a+ +l+
  CDO72766.1  9 LKAAREALAKQDNEKARDAALGVLEYEPDNYNANVFLG 46
                678888999999***********999999998887775 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.7e-07
      TPR_14  7 laeallalGdpdeAiallrralalaPddaeawllla 42
                l+ a+l+l++ +++++++r+a++l+Pd+a aw    
  CDO72766.1 45 LGLAYLRLDEVEKSEQAYRKAIELNPDQALAWQGIL 80
                899*****************************8655 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.49
      TPR_14   3 allalaeallalGdpdeAiallrralala.Pddaeawlllaq 43 
                  l+ala++++a+ d  + +++ +++++l   +d+  +++la+
  CDO72766.1  95 GLQALARIHAAANDAVKCAEAVQKLIELRrRTDLGNRMQLAE 136
                 5799*********************99751466677777775 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 1.8
      TPR_14  23 llrralalaPddaeawlllaq 43 
                  lr+ ++l+P++a a ll a 
  CDO72766.1 319 TLRQFIQLFPSSALAKLLKAY 339
                 69999**********999885 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.061
      TPR_14   6 alaeallalGdpdeAiallrralal 30 
                   a++++  Gd++ Ai++++  l+l
  CDO72766.1 387 VVAKLYELEGDYENAIKVAESGLEL 411
                 56899****************9986 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.63
      TPR_14  19 eAiallrralalaPddaeawllla 42 
                 +A+++ +++l  +Pd+  a+++ +
  CDO72766.1 449 RALRIIDDVLTEDPDNISALMARG 472
                 79**************99998766 PP

  == domain 7  score: 10.6 bits;  conditional E-value: 0.001
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                 al+a++ +l ++ ++++A++l+ ++++l Pdda++
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGKIIRLKPDDADI 501
                 8999****************************976 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.5
      TPR_14   2 eallalaeallalG.d.pdeAiallrralalaPddaea 37 
                 + +++l++ +++ G d  +eA +++   l++  ++a a
  CDO72766.1 545 RCWWKLGRCYWEMGaDhREEAYKHFITSLKRSATFASA 582
                 679********988542678***999999988877766 PP

  == domain 9  score: 11.2 bits;  conditional E-value: 0.00065
      TPR_14  15 GdpdeAiallrralalaPddaeawlllaq 43 
                  dp++A +++++a +l+P +aea ++la+
  CDO72766.1 597 PDPKRASKCFQKAFELDPREAEAARRLAE 625
                 589************************96 PP

  == domain 10  score: 16.6 bits;  conditional E-value: 1.2e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a++a ++++l+++++ +Ai++++ al++  dd   wl+l++
  CDO72766.1 668 WAWKAVGAVELTRRNYPAAIEAFQIALRTEVDDHMSWLRLGE 709
                 89**************************************97 PP

  == domain 11  score: 24.1 bits;  conditional E-value: 4.5e-08
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaea 37 
                 +l+l+ea+  +G++++A ++l+ra +l+P+d++a
  CDO72766.1 704 WLRLGEAYSKAGRYAAAFKALERARELDPEDWVA 737
                 9*******************************98 PP

  == domain 12  score: 8.9 bits;  conditional E-value: 0.0035
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++e+ ++ G ++e+i+++r +la  P ++ ++  l+q
  CDO72766.1 741 IGEVQRQMGAFEESIRAFRSILASRPHELGVLHSLGQ 777
                 68999*********************99999888776 PP

  == domain 13  score: 8.7 bits;  conditional E-value: 0.0041
      TPR_14  18 deAiallrralalaPddaeawllla 42 
                 + A+a +++a++l P+++++w +l+
  CDO72766.1 933 QHAVAQFKEAIRLEPANDAFWVALG 957
                 459*******************998 PP

  == domain 14  score: 4.0 bits;  conditional E-value: 0.13
      TPR_14    3 allalaeallalGdpdeAiallrralalaPddaeawl 39  
                   +  l+ ++l+ +d + A +++ +a  l+Pd a aw+
  CDO72766.1  985 TWTNLGLFYLHHEDRQLANEAFYKAQTLDPDYALAWI 1021
                  57779999****************************7 PP

  == domain 15  score: 2.4 bits;  conditional E-value: 0.44
      TPR_14    6 alaeallalGdpdeAiallrralalaPddaeawllla 42  
                    + +   +G  +eA+al++ a  l  + +ea l++a
  CDO72766.1 1022 GQGLVATLNGHDREARALFEHATTLSATVPEADLEYA 1058
                  445556668999*************999999999998 PP

  == domain 16  score: 3.4 bits;  conditional E-value: 0.21
      TPR_14   20 AiallrralalaPddaeawll 40  
                  A  +l+r++++ P+da+a+ l
  CDO72766.1 1082 AFFVLDRYCKQRPKDARALHL 1102
                  7779************99865 PP

  == domain 17  score: 2.6 bits;  conditional E-value: 0.38
      TPR_14    8 aeallalGdpdeAiallrralal 30  
                  + ++++ G    Ai+l+ ra+a 
  CDO72766.1 1104 GLVCERVGHVTLAIDLFSRAIAV 1126
                  66788888888888888888773 PP

  == domain 18  score: 2.1 bits;  conditional E-value: 0.55
      TPR_14    7 laeallalGdpdeAiallrralalaP.....ddaeawlllaql 44  
                  la++ l   d+++A++ ++ a  l P     +daea  llaq+
  CDO72766.1 1150 LARLRLSTADYEGALESYQVATGLLPeepteGDAEAKVLLAQC 1192
                  899999999**********999887744455557899999885 PP

  == domain 19  score: 10.1 bits;  conditional E-value: 0.0014
      TPR_14    9 eallalGdpdeAiallrralalaPddaeawl 39  
                   a+  lG+++eA+al+++a a+a d ++++ 
  CDO72766.1 1198 LAHSKLGQLAEALALFEAAMATAADLPVIRG 1228
                  577889***************9999998774 PP

  == domain 20  score: 11.3 bits;  conditional E-value: 0.00059
      TPR_14   11 llalGdpdeAiallrralalaPddaeawlllaq 43  
                  ++ +G   +A++l+++a+ l P+d++aw +la+
  CDO72766.1 1322 EADNGAESGALRLAQKAVMLTPWDRRAWEALAF 1354
                  456777889**********************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.58     5e+02       5      34 .]       9      38 ..       5      38 .. 0.86
   2 !   22.3   0.1   1.1e-07   9.4e-05       3      33 ..      41      71 ..      39      72 .. 0.93
   3 ?   -2.4   0.1       9.6   8.2e+03       5      31 ..      97     123 ..      94     125 .. 0.77
   4 !    8.3   0.1    0.0035         3       8      30 ..     389     411 ..     387     411 .. 0.89
   5 ?   -1.0   0.0       3.4   2.9e+03       4      34 .]     468     498 ..     465     498 .. 0.78
   6 ?    4.8   0.0     0.048        41       1      15 [.     544     558 ..     544     575 .. 0.88
   7 ?    5.5   0.0     0.027        23      17      32 ..     599     614 ..     598     616 .. 0.88
   8 !   19.9   0.1   6.7e-07   0.00058       3      34 .]     703     734 ..     703     734 .. 0.96
   9 ?    3.8   0.0     0.099        85       5      30 ..     739     764 ..     737     767 .. 0.85
  10 ?    5.5   0.0     0.027        23       3      20 ..     771     788 ..     769     795 .. 0.86
  11 ?    1.8   0.0      0.42   3.6e+02      19      34 .]     934     949 ..     932     949 .. 0.89
  12 !   10.1   0.0   0.00095      0.81       2      34 .]     984    1016 ..     983    1016 .. 0.94
  13 ?    1.0   0.0      0.78   6.6e+02       3      31 ..    1019    1047 ..    1017    1049 .. 0.83
  14 ?   -0.3   0.0         2   1.7e+03       1      28 [.    1097    1124 ..    1097    1126 .. 0.93
  15 ?    3.3   0.0      0.14   1.2e+02       3      25 ..    1146    1168 ..    1145    1175 .. 0.89
  16 ?    6.7   0.2     0.011       9.3       7      28 ..    1196    1217 ..    1190    1222 .. 0.86
  17 ?   -1.7   0.2       5.4   4.6e+03      17      33 ..    1247    1263 ..    1245    1264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.58
                HHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyekaleldpdn 34
                ++ ++  l ++d e+A  +   +le++pdn
  CDO72766.1  9 LKAAREALAKQDNEKARDAALGVLEYEPDN 38
                5677888999*****************996 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.1e-07
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekaleldpd 33
                a + lg++yl l + e+++++y+ka+el+pd
  CDO72766.1 41 ANVFLGLAYLRLDEVEKSEQAYRKAIELNPD 71
                6788**************************8 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 9.6
                 HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleld 31 
                 + l++i+   +d  +  e+ +k +el+
  CDO72766.1  97 QALARIHAAANDAVKCAEAVQKLIELR 123
                 678888888888888888888888886 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0035
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekalel 30 
                 +++y+  gdye+A+++ e  lel
  CDO72766.1 389 AKLYELEGDYENAIKVAESGLEL 411
                 789************99988876 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 3.4
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++  g +++  ++ e A e + k ++l+pd+
  CDO72766.1 468 LMARGFVLQHAKRWEDAAELFGKIIRLKPDD 498
                 566666667777778999***********96 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.048
                 CCHHHHHHHHHHHTT CS
       TPR_8   1 aeayynlgsiylklg 15 
                 a+ +++lg++y+++g
  CDO72766.1 544 ARCWWKLGRCYWEMG 558
                 799***********9 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleldp 32 
                  + A ++++ka eldp
  CDO72766.1 599 PKRASKCFQKAFELDP 614
                 6789***********9 PP

  == domain 8  score: 19.9 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++++lg +y+k g+y +A +++e+a eldp++
  CDO72766.1 703 SWLRLGEAYSKAGRYAAAFKALERARELDPED 734
                 69****************************85 PP

  == domain 9  score: 3.8 bits;  conditional E-value: 0.099
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                 y +g + +++g +ee++ +++  l  
  CDO72766.1 739 YFIGEVQRQMGAFEESIRAFRSILAS 764
                 889*****************977655 PP

  == domain 10  score: 5.5 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHTT-HHHH CS
       TPR_8   3 ayynlgsiylklgdyeeA 20 
                 +++ lg+ yl+lg++e +
  CDO72766.1 771 VLHSLGQSYLDLGRFELS 788
                 6899***********976 PP

  == domain 11  score: 1.8 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHH. CS
       TPR_8  19 eAkeyyekaleldpdn 34 
                  A++ +++a++l+p+n
  CDO72766.1 934 HAVAQFKEAIRLEPAN 949
                 6999**********86 PP

  == domain 12  score: 10.1 bits;  conditional E-value: 0.00095
                  CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8    2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34  
                    + nlg+ yl  +d + A e++ ka +ldpd+
  CDO72766.1  984 ATWTNLGLFYLHHEDRQLANEAFYKAQTLDPDY 1016
                  57*****************************85 PP

  == domain 13  score: 1.0 bits;  conditional E-value: 0.78
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyyekaleld 31  
                  a+   g++    g   eA + +e+a++l+
  CDO72766.1 1019 AWIGQGLVATLNGHDREARALFEHATTLS 1047
                  5666777788889999**********997 PP

  == domain 14  score: -0.3 bits;  conditional E-value: 2
                  CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8    1 aeayynlgsiylklgdyeeAkeyyekal 28  
                  a+a+++ g++++  g    A+  + +a+
  CDO72766.1 1097 ARALHLFGLVCERVGHVTLAIDLFSRAI 1124
                  799*******************999998 PP

  == domain 15  score: 3.3 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyye 25  
                  a++nl+++ l++ dye A e+y+
  CDO72766.1 1146 AHVNLARLRLSTADYEGALESYQ 1168
                  5789*****************97 PP

  == domain 16  score: 6.7 bits;  conditional E-value: 0.011
                  HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8    7 lgsiylklgdyeeAkeyyekal 28  
                   g++++klg++ eA + +e a 
  CDO72766.1 1196 SGLAHSKLGQLAEALALFEAAM 1217
                  589****************996 PP

  == domain 17  score: -1.7 bits;  conditional E-value: 5.4
                  HHHHHHHHHHHHHHHHH CS
       TPR_8   17 yeeAkeyyekaleldpd 33  
                  +e+Ak  + + +e+d +
  CDO72766.1 1247 KESAKTQLLQSIEYDSE 1263
                  689**********9987 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.6     0.056        48      20      41 ..      31      52 ..      15      53 .. 0.80
   2 !   16.6   1.5   5.4e-06    0.0046       1      41 [.      46      86 ..      46      87 .. 0.87
   3 ?   -0.1   0.1      0.88   7.5e+02       7      15 ..     395     403 ..     390     411 .. 0.85
   4 ?    0.7   0.0      0.51   4.4e+02      24      39 ..     461     476 ..     458     477 .. 0.92
   5 ?    4.1   0.0     0.045        38       9      30 ..     480     501 ..     478     503 .. 0.94
   6 ?    0.3   0.0      0.66   5.6e+02      26      42 .]     542     558 ..     540     558 .. 0.90
   7 ?   -1.2   0.0         2   1.7e+03      11      38 ..     563     590 ..     563     592 .. 0.85
   8 ?    5.1   0.0     0.021        18      13      30 ..     602     619 ..     600     630 .. 0.86
   9 ?    5.6   0.1     0.014        12       9      42 .]     682     715 ..     680     715 .. 0.95
  10 !   13.7   0.2   4.3e-05     0.037       1      42 []     708     749 ..     708     749 .. 0.93
  11 ?    1.9   0.0      0.21   1.8e+02       1      42 []     742     783 ..     742     783 .. 0.88
  12 !   14.5   0.0   2.4e-05     0.021      13      37 ..     935     959 ..     932     963 .. 0.93
  13 !   11.5   0.0   0.00021      0.18      16      38 ..     971     993 ..     970     995 .. 0.92
  14 ?    1.8   0.1      0.22   1.9e+02      19      37 ..    1008    1026 ..    1002    1031 .. 0.79
  15 ?   -1.4   0.0       2.3   1.9e+03      21      40 ..    1090    1109 ..    1090    1111 .. 0.84
  16 ?    3.4   0.0     0.071        61       9      25 ..    1159    1175 ..    1155    1179 .. 0.82
  17 ?    1.9   0.0      0.21   1.8e+02       2      21 ..    1198    1217 ..    1197    1224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.056
      TPR_11 20 AlkldPdnaeayynLGlayykq 41
                 l++ Pdn +a   LGlay+++
  CDO72766.1 31 VLEYEPDNYNANVFLGLAYLRL 52
                799****************987 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 5.4e-06
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41
                G ay  + + e++ +aY+kA++l+Pd+a a+ ++ ++y kq
  CDO72766.1 46 GLAYLRLDEVEKSEQAYRKAIELNPDQALAWQGILQLYEKQ 86
                789999999********************997776666666 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.88
      TPR_11   7 qGkyeeAie 15 
                  G+ye+Ai+
  CDO72766.1 395 EGDYENAIK 403
                 699****98 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.51
      TPR_11  24 dPdnaeayynLGlayy 39 
                 dPdn +a+ ++G++++
  CDO72766.1 461 DPDNISALMARGFVLQ 476
                 9***********9975 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.045
      TPR_11   9 kyeeAieaYkkAlkldPdnaea 30 
                 ++e+A e + k ++l+Pd+a++
  CDO72766.1 480 RWEDAAELFGKIIRLKPDDADI 501
                 799*****************98 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.66
      TPR_11  26 dnaeayynLGlayykqG 42 
                 d a+ +++LG  y+++G
  CDO72766.1 542 DKARCWWKLGRCYWEMG 558
                 88999**********98 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGlay 38 
                 eeA +++ + lk + ++a+a+  LGl y
  CDO72766.1 563 EEAYKHFITSLKRSATFASAFTSLGLYY 590
                 7888888899999999*********655 PP

  == domain 8  score: 5.1 bits;  conditional E-value: 0.021
      TPR_11  13 AieaYkkAlkldPdnaea 30 
                 A ++++kA +ldP  aea
  CDO72766.1 602 ASKCFQKAFELDPREAEA 619
                 889***********9998 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.014
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +y++Aiea++ Al+   d+   ++ LG+ay k G
  CDO72766.1 682 NYPAAIEAFQIALRTEVDDHMSWLRLGEAYSKAG 715
                 699***************************9876 PP

  == domain 10  score: 13.7 bits;  conditional E-value: 4.3e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G ay + G+y +A +a+++A +ldP++  a y +G+++ ++G
  CDO72766.1 708 GEAYSKAGRYAAAFKALERARELDPEDWVASYFIGEVQRQMG 749
                 88999**********************999999999988877 PP

  == domain 11  score: 1.9 bits;  conditional E-value: 0.21
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G + ++ G +ee+i a++  l+ +P    +++ LG+ y+ +G
  CDO72766.1 742 GEVQRQMGAFEESIRAFRSILASRPHELGVLHSLGQSYLDLG 783
                 5667899*********99999999999999999999999887 PP

  == domain 12  score: 14.5 bits;  conditional E-value: 2.4e-05
      TPR_11  13 AieaYkkAlkldPdnaeayynLGla 37 
                 A++++k+A++l P n  ++ +LG+a
  CDO72766.1 935 AVAQFKEAIRLEPANDAFWVALGNA 959
                 9***********************9 PP

  == domain 13  score: 11.5 bits;  conditional E-value: 0.00021
      TPR_11  16 aYkkAlkldPdnaeayynLGlay 38 
                 +Y +Al+ d++na  + nLGl y
  CDO72766.1 971 SYIRALEVDSKNAATWTNLGLFY 993
                 699*****************877 PP

  == domain 14  score: 1.8 bits;  conditional E-value: 0.22
      TPR_11   19 kAlkldPdnaeayynLGla 37  
                  kA  ldPd+a a+ + Gl+
  CDO72766.1 1008 KAQTLDPDYALAWIGQGLV 1026
                  7889*******99777665 PP

  == domain 15  score: -1.4 bits;  conditional E-value: 2.3
      TPR_11   21 lkldPdnaeayynLGlayyk 40  
                  +k +P++a+a++  Gl+  +
  CDO72766.1 1090 CKQRPKDARALHLFGLVCER 1109
                  6889********99998766 PP

  == domain 16  score: 3.4 bits;  conditional E-value: 0.071
      TPR_11    9 kyeeAieaYkkAlkldP 25  
                  +ye+A+e+Y+ A  l P
  CDO72766.1 1159 DYEGALESYQVATGLLP 1175
                  7*********8876655 PP

  == domain 17  score: 1.9 bits;  conditional E-value: 0.21
      TPR_11    2 dayyeqGkyeeAieaYkkAl 21  
                   a  ++G++ eA++ +++A 
  CDO72766.1 1198 LAHSKLGQLAEALALFEAAM 1217
                  566689********999985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.013        12       8      32 ..      44      68 ..      22      71 .. 0.71
   2 !    6.9   0.3    0.0089       7.6       6      33 ..      42      69 ..      37      91 .. 0.71
   3 ?    1.4   1.0      0.48   4.1e+02       8      50 ..      98     140 ..      92     141 .. 0.90
   4 ?    5.9   0.1     0.018        15       9      35 ..     388     414 ..     373     418 .. 0.59
   5 !   13.6   0.4   7.3e-05     0.062       5      71 ..     467     529 ..     463     531 .. 0.88
   6 ?    6.4   0.2     0.013        11      16      60 ..     516     559 ..     512     568 .. 0.81
   7 ?   -2.3   0.1       6.5   5.5e+03      17      28 ..     604     615 ..     598     631 .. 0.50
   8 !   21.2   0.7   3.1e-07   0.00027       3      76 ..     667     732 ..     666     733 .. 0.91
   9 !    8.8   0.0    0.0024         2       8      64 ..     740     788 ..     735     799 .. 0.80
  10 !   11.0   2.0   0.00047       0.4       3      74 ..     983    1046 ..     981    1048 .. 0.89
  11 !   11.5   0.0   0.00032      0.27      40      76 ..    1092    1128 ..    1086    1129 .. 0.92
  12 ?    4.1   0.1     0.068        58      47      72 ..    1146    1171 ..    1144    1176 .. 0.80
  13 !    9.9   1.7     0.001      0.89      43      74 ..    1188    1219 ..    1183    1223 .. 0.76
  14 ?   -2.0   0.0       5.5   4.7e+03       8      54 ..    1233    1277 ..    1229    1280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
      TPR_12  8 nlaavlrrlgrydeAlellekalei 32
                 l+++++rl + +++++ ++ka+e+
  CDO72766.1 44 FLGLAYLRLDEVEKSEQAYRKAIEL 68
                4666666666666666666666664 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0089
      TPR_12  6 lnnlaavlrrlgrydeAlellekaleia 33
                 + l+++++rl + +++++ ++ka+e+ 
  CDO72766.1 42 NVFLGLAYLRLDEVEKSEQAYRKAIELN 69
                4458888888888888888888888775 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.48
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrn 50 
                  la +++++ +  ++ e  +k +e++rr+  +++ ++a++l  
  CDO72766.1  98 ALARIHAAANDAVKCAEAVQKLIELRRRTDLGNRMQLAEALAL 140
                 5999999**********************99999999999976 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.018
      TPR_12   9 laavlrrlgrydeAlellekaleiarr 35 
                 +a ++   g+y+ A++  e  le+++r
  CDO72766.1 388 VAKLYELEGDYENAIKVAESGLELVQR 414
                 455555556666666655555555555 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 7.3e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 al  ++ vl++++r+++A el+ k +++    + +d + ++++    +++  ++g++++A e l+e+
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGKIIRLK---P-DDADIASRAKEEHAWCAAMSGQLQAATEELREV 529
                 66689********************7777...4.6789999*******************9988886 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.013
      TPR_12  16 lgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgr 60 
                  g+++ A e l++++   +++ G++ ++ a++   Lgr+y+++g 
  CDO72766.1 516 SGQLQAATEELREVIGELEAIEGHE-EDKARCWWKLGRCYWEMGA 559
                 6888888888888888899997765.69*************9974 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 6.5
      TPR_12  17 grydeAlellek 28 
                 + +++A+el  +
  CDO72766.1 604 KCFQKAFELDPR 615
                 333333333333 PP

  == domain 8  score: 21.2 bits;  conditional E-value: 3.1e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a+a+  ++av++ + +y  A+e ++ al+    +  +dh     +   Lg++y+++gry++A ++le+a ++++
  CDO72766.1 667 AWAWKAVGAVELTRRNYPAAIEAFQIALRTE--V--DDH----MSWLRLGEAYSKAGRYAAAFKALERARELDP 732
                 5688789********************5555..9..9**....89*************************9975 PP

  == domain 9  score: 8.8 bits;  conditional E-value: 0.0024
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                  +++v r++g ++e+++ ++  l+ +     p h  ++ +l+ Lg+ y+ lgr+e  
  CDO72766.1 740 FIGEVQRQMGAFEESIRAFRSILASR-----P-H--ELGVLHSLGQSYLDLGRFELS 788
                 58999999999999999999999888.....6.5..777899999999999998865 PP

  == domain 10  score: 11.0 bits;  conditional E-value: 0.00047
      TPR_12    3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74  
                  a++++nl++++++ ++ + A e + ka  +      pd   +a + ++ g +  + g+ +eA++l+e+a+ +
  CDO72766.1  983 AATWTNLGLFYLHHEDRQLANEAFYKAQTLD-----PD---YALAWIGQGLVATLNGHDREARALFEHATTL 1046
                  67899***********999999999994444.....77...599*************************875 PP

  == domain 11  score: 11.5 bits;  conditional E-value: 0.00032
      TPR_12   40 dhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  ++p  a++l+  g ++++ g+   A++l+ +a+a++e
  CDO72766.1 1092 QRPKDARALHLFGLVCERVGHVTLAIDLFSRAIAVLE 1128
                  67999*****************************987 PP

  == domain 12  score: 4.1 bits;  conditional E-value: 0.068
      TPR_12   47 tlrnLgrlyralgryeeAlelleeal 72  
                  +  nL+rl + + +ye Ale ++ a+
  CDO72766.1 1146 AHVNLARLRLSTADYEGALESYQVAT 1171
                  56799999999999999999999876 PP

  == domain 13  score: 9.9 bits;  conditional E-value: 0.001
      TPR_12   43 ltattlrnLgrlyralgryeeAlelleealai 74  
                  l+a+++ + g ++++lg+++eAl+l+e a+a 
  CDO72766.1 1188 LLAQCQLGSGLAHSKLGQLAEALALFEAAMAT 1219
                  56777888888888888888888888888765 PP

  == domain 14  score: -2.0 bits;  conditional E-value: 5.5
      TPR_12    8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrl 54  
                  +la++l++ g  deA e  ++ l +  ++ + +++ +++tl ++g+l
  CDO72766.1 1233 RLAQTLWAVGT-DEAKESAKTQLLQSIEY-DSENLMAINTLAGMGIL 1277
                  57777777777.88888888888888776.67788999999999976 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   4.2   0.00021      0.18       2      62 ..      16      76 ..      15      82 .. 0.89
   2 ?    1.0   0.8      0.73   6.2e+02       9      53 ..      78     121 ..      75     128 .. 0.83
   3 ?    0.6   0.0      0.94     8e+02       4      18 ..     395     409 ..     373     419 .. 0.67
   4 !   18.6   0.0   2.4e-06     0.002       7      63 ..     447     503 ..     445     506 .. 0.95
   5 ?    2.1   0.0      0.32   2.8e+02       3      39 ..     515     558 ..     513     559 .. 0.79
   6 ?    5.5   0.0     0.029        25       6      41 ..     598     633 ..     594     635 .. 0.86
   7 !   19.3   0.4   1.4e-06    0.0012       4      58 ..     680     734 ..     677     740 .. 0.89
   8 !   23.5   0.0   6.8e-08   5.8e-05       4      57 ..     714     767 ..     713     777 .. 0.92
   9 ?    6.0   0.0      0.02        17       3      42 ..     747     786 ..     745     787 .. 0.96
  10 ?    2.1   0.1      0.32   2.7e+02       9      34 ..     934     959 ..     929     963 .. 0.89
  11 ?    0.5   0.2         1   8.8e+02      17      59 ..     975    1017 ..     972    1029 .. 0.67
  12 ?   -0.1   0.5       1.6   1.3e+03       6      47 ..     998    1039 ..     993    1048 .. 0.76
  13 ?   -2.1   0.0         7     6e+03       9      33 ..    1035    1059 ..    1029    1064 .. 0.84
  14 ?    5.5   1.1     0.028        24       8      67 ..    1121    1191 ..    1118    1192 .. 0.79
  15 !    9.1   0.5    0.0022       1.9       5      49 ..    1204    1251 ..    1202    1263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00021
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62
                la +d + A ++   +l+++p+n +a   L  a+l l ++++ e++  ++ e +pd+a ++
  CDO72766.1 16 LAKQDNEKARDAALGVLEYEPDNYNANVFLGLAYLRLDEVEKSEQAYRKAIELNPDQALAW 76
                7888888888888899999*************************************76555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.73
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                   l+l+e+  q  p++   + +LA+++ a+++  +  +++++l e
  CDO72766.1  78 GILQLYEK-QQNWPEYVKGLQALARIHAAANDAVKCAEAVQKLIE 121
                 56888888.6889999999999*******9999988888888776 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.94
      TPR_19   4 egdyaeAlalleqal 18 
                 egdy++A++  e+ l
  CDO72766.1 395 EGDYENAIKVAESGL 409
                 566666666666544 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 2.4e-06
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 + +Al++   +l+edp+n  a+++   +l  ++++++A +l  ++ + +pdda++as
  CDO72766.1 447 HVRALRIIDDVLTEDPDNISALMARGFVLQHAKRWEDAAELFGKIIRLKPDDADIAS 503
                 678*************************************************99875 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.32
      TPR_19   3 aegdyaeAlalleqalqe.......dpknaearllLAeallalg 39 
                 ++g++++A + l++++ e       + + a+ +  L ++++++g
  CDO72766.1 515 MSGQLQAATEELREVIGEleaieghEEDKARCWWKLGRCYWEMG 558
                 68999***9999998755555555577799999999****9998 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.029
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgql 41 
                 d+ +A + +++a++ dp  aea+ +LAe   + g++
  CDO72766.1 598 DPKRASKCFQKAFELDPREAEAARRLAEGFAEEGEW 633
                 67889999*******************966666665 PP

  == domain 7  score: 19.3 bits;  conditional E-value: 1.4e-06
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 + +y +A+++++ al  + ++   +l+L ea+ ++g++++A ++L+++ e dp d
  CDO72766.1 680 RRNYPAAIEAFQIALRTEVDDHMSWLRLGEAYSKAGRYAAAFKALERARELDPED 734
                 6799***********8878877777778************************984 PP

  == domain 8  score: 23.5 bits;  conditional E-value: 6.8e-08
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +g+ya+A ++le+a + dp+++ a +   e++ ++g ++e +++   ++++ p 
  CDO72766.1 714 AGRYAAAFKALERARELDPEDWVASYFIGEVQRQMGAFEESIRAFRSILASRPH 767
                 8***********************************************999887 PP

  == domain 9  score: 6.0 bits;  conditional E-value: 0.02
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqld 42 
                 ++g ++e +++++++l+  p+ + ++  L + +l lg+++
  CDO72766.1 747 QMGAFEESIRAFRSILASRPHELGVLHSLGQSYLDLGRFE 786
                 899***********************************97 PP

  == domain 10  score: 2.1 bits;  conditional E-value: 0.32
      TPR_19   9 eAlalleqalqedpknaearllLAea 34 
                  A+a +++a+  +p n++ + +L +a
  CDO72766.1 934 HAVAQFKEAIRLEPANDAFWVALGNA 959
                 6999****************999876 PP

  == domain 11  score: 0.5 bits;  conditional E-value: 1
      TPR_19   17 alqedpknaearllLAeallalgqldeAealLdalpeedpdda 59  
                  al+ d kna+ + +L   +l   + + A ++  +++  dpd a
  CDO72766.1  975 ALEVDSKNAATWTNLGLFYLHHEDRQLANEAFYKAQTLDPDYA 1017
                  6777777777777777777777776666666666666666633 PP

  == domain 12  score: -0.1 bits;  conditional E-value: 1.6
      TPR_19    6 dyaeAlalleqalqedpknaearllLAeallalgqldeAeal 47  
                  d + A +++ +a + dp++a a+++   +   +g+  eA+al
  CDO72766.1  998 DRQLANEAFYKAQTLDPDYALAWIGQGLVATLNGHDREARAL 1039
                  66778899999999******9999766666666666666665 PP

  == domain 13  score: -2.1 bits;  conditional E-value: 7
      TPR_19    9 eAlalleqalqedpknaearllLAe 33  
                  eA al+e a + ++  +ea l +A 
  CDO72766.1 1035 EARALFEHATTLSATVPEADLEYAT 1059
                  8999999999999999999999886 PP

  == domain 14  score: 5.5 bits;  conditional E-value: 0.028
      TPR_19    8 aeAlalleqalqe......dpknaearllLAeallalgqldeAealLdalpeedpd.....daryasLlAk 67  
                   +A+a le+a++e      + +   a  +LA++ l++ +++ A +  + +    p      da+++ LlA+
  CDO72766.1 1121 SRAIAVLEAAYEEtedpviERQFTIAHVNLARLRLSTADYEGALESYQVATGLLPEeptegDAEAKVLLAQ 1191
                  5799*******99887777778**********************999887766666444555666666665 PP

  == domain 15  score: 9.1 bits;  conditional E-value: 0.0022
      TPR_19    5 gdyaeAlalleqalqedpk....naearllLAeallalgqldeAealLd 49  
                  g++aeAlal+e+a++ +++     + +  +LA+ l+a g +deA++  +
  CDO72766.1 1204 GQLAEALALFEAAMATAADlpviRGHIVVRLAQTLWAVG-TDEAKESAK 1251
                  99**************999888888888899**999988.677776655 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2      0.11        98       5      30 ..      31      59 ..      27      61 .. 0.65
   2 !   10.9   0.4   0.00055      0.47       1      28 [.      61      88 ..      61     114 .. 0.91
   3 ?   -2.3   0.1       9.2   7.9e+03       3      22 ..     321     340 ..     319     349 .. 0.81
   4 ?   -2.0   0.0       7.3   6.2e+03      20      33 ..     389     402 ..     380     403 .. 0.82
   5 ?    3.9   0.0       0.1        85       5      32 ..     457     484 ..     453     486 .. 0.89
   6 ?   -2.1   0.0       7.8   6.7e+03       2      15 ..     488     501 ..     487     502 .. 0.84
   7 ?   -1.5   0.0       5.1   4.3e+03       4      24 ..     571     591 ..     568     593 .. 0.87
   8 ?    3.6   0.0      0.13   1.1e+02       1      21 [.     605     625 ..     605     634 .. 0.92
   9 ?    6.5   0.0     0.015        13      12      32 ..     700     720 ..     693     722 .. 0.89
  10 ?   -1.3   0.0       4.5   3.9e+03      15      29 ..     771     785 ..     770     788 .. 0.85
  11 ?    2.3   0.0      0.31   2.6e+02       2      22 ..     939     959 ..     938     964 .. 0.90
  12 !   14.2   0.1     5e-05     0.043       2      28 ..     972     998 ..     971    1003 .. 0.89
  13 ?    5.2   0.0     0.037        32       2      33 ..    1006    1037 ..    1005    1038 .. 0.91
  14 ?   -0.0   0.0       1.7   1.5e+03       6      28 ..    1090    1112 ..    1086    1118 .. 0.79
  15 ?   -0.2   0.0       1.9   1.7e+03      15      33 ..    1146    1164 ..    1142    1165 .. 0.87
  16 ?   -0.2   0.1       2.1   1.8e+03      13      33 ..    1183    1210 ..    1181    1211 .. 0.74
  17 ?   -0.9   0.0       3.3   2.8e+03       3      20 ..    1255    1272 ..    1254    1272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.11
      TPR_17  5 aleldPnn..adaynnLAelll.knGdlm 30
                +le++P+n  a+++  LA+l l +  +++
  CDO72766.1 31 VLEYEPDNynANVFLGLAYLRLdEVEKSE 59
                699****9667777777776432444444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00055
      TPR_17  1 lylkaleldPnnadaynnLAelllknGd 28
                +y+ka+el+P+ a a++   +l++k+ +
  CDO72766.1 61 AYRKAIELNPDQALAWQGILQLYEKQQN 88
                59**************998888887765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 9.2
      TPR_17   3 lkaleldPnnadaynnLAel 22 
                 +++++l P++a a  ++A++
  CDO72766.1 321 RQFIQLFPSSALAKLLKAYF 340
                 68999999999988888877 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 7.3
      TPR_17  20 AelllknGdlmtAr 33 
                 A+l++  Gd++ A+
  CDO72766.1 389 AKLYELEGDYENAI 402
                 8999999***9997 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.1
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtA 32 
                 +l  dP+n  a+  ++ +l +++++++A
  CDO72766.1 457 VLTEDPDNISALMARGFVLQHAKRWEDA 484
                 6788******************999988 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 7.8
      TPR_17   2 ylkaleldPnnada 15 
                 + k ++l P++ad 
  CDO72766.1 488 FGKIIRLKPDDADI 501
                 67899*******96 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 5.1
      TPR_17   4 kaleldPnnadaynnLAelll 24 
                  +l++  + a a++ L+ +++
  CDO72766.1 571 TSLKRSATFASAFTSLGLYYS 591
                 6899999**********9997 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 0.13
      TPR_17   1 lylkaleldPnnadaynnLAe 21 
                 +++ka eldP  a+a   LAe
  CDO72766.1 605 CFQKAFELDPREAEAARRLAE 625
                 89**************99996 PP

  == domain 9  score: 6.5 bits;  conditional E-value: 0.015
      TPR_17  12 nadaynnLAelllknGdlmtA 32 
                 +  ++  L+e+++k+G+++ A
  CDO72766.1 700 DHMSWLRLGEAYSKAGRYAAA 720
                 6679**************988 PP

  == domain 10  score: -1.3 bits;  conditional E-value: 4.5
      TPR_17  15 aynnLAelllknGdl 29 
                 +++ L++ +l +G++
  CDO72766.1 771 VLHSLGQSYLDLGRF 785
                 6899******99986 PP

  == domain 11  score: 2.3 bits;  conditional E-value: 0.31
      TPR_17   2 ylkaleldPnnadaynnLAel 22 
                 +++a++l+P n  ++  L+++
  CDO72766.1 939 FKEAIRLEPANDAFWVALGNA 959
                 799***************985 PP

  == domain 12  score: 14.2 bits;  conditional E-value: 5e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGd 28 
                 y +ale d +na  ++nL+ ++l+  d
  CDO72766.1 972 YIRALEVDSKNAATWTNLGLFYLHHED 998
                 789*******************97665 PP

  == domain 13  score: 5.2 bits;  conditional E-value: 0.037
      TPR_17    2 ylkaleldPnnadaynnLAelllknGdlmtAr 33  
                  + ka  ldP++a a+   + +   nG  ++Ar
  CDO72766.1 1006 FYKAQTLDPDYALAWIGQGLVATLNGHDREAR 1037
                  5689999*******************999998 PP

  == domain 14  score: -0.0 bits;  conditional E-value: 1.7
      TPR_17    6 leldPnnadaynnLAelllknGd 28  
                   ++ P++a a+++ + + ++ G 
  CDO72766.1 1090 CKQRPKDARALHLFGLVCERVGH 1112
                  5788*********9998777765 PP

  == domain 15  score: -0.2 bits;  conditional E-value: 1.9
      TPR_17   15 aynnLAelllknGdlmtAr 33  
                  a+ nLA+l l+  d++ A+
  CDO72766.1 1146 AHVNLARLRLSTADYEGAL 1164
                  899*******999999887 PP

  == domain 16  score: -0.2 bits;  conditional E-value: 2.1
      TPR_17   13 adaynnLAelll.......knGdlmtAr 33  
                  a+a  +LA+++l       k+G+l++A+
  CDO72766.1 1183 AEAKVLLAQCQLgsglahsKLGQLAEAL 1210
                  55556677777777777779****9997 PP

  == domain 17  score: -0.9 bits;  conditional E-value: 3.3
      TPR_17    3 lkaleldPnnadaynnLA 20  
                  l+++e+d  n  a n LA
  CDO72766.1 1255 LQSIEYDSENLMAINTLA 1272
                  799*******99999998 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1      0.01       8.8       4      31 ..      44      71 ..      43      74 .. 0.83
   2 ?   -2.4   0.0         8   6.8e+03       2      14 ..      96     108 ..      96     111 .. 0.84
   3 ?   -1.5   0.1       3.9   3.3e+03      16      24 ..     182     190 ..     181     199 .. 0.85
   4 ?    5.9   0.1     0.017        15       6      24 ..     389     407 ..     388     418 .. 0.82
   5 ?    2.5   0.0      0.21   1.8e+02      14      34 ..     480     500 ..     474     502 .. 0.81
   6 ?   -1.8   0.0       4.9   4.2e+03       3      24 ..     548     571 ..     546     577 .. 0.69
   7 ?   -0.5   0.0       1.9   1.7e+03      14      35 ..     598     617 ..     598     618 .. 0.86
   8 ?   -0.1   0.0       1.4   1.2e+03      13      32 ..     681     700 ..     678     701 .. 0.84
   9 !   10.3   0.2    0.0007       0.6       1      34 [.     703     734 ..     703     734 .. 0.90
  10 ?    3.2   0.0      0.12   1.1e+02       4      29 ..     740     765 ..     737     770 .. 0.82
  11 ?    2.7   0.0      0.18   1.5e+02       2      16 ..     772     786 ..     771     789 .. 0.92
  12 ?   -1.5   0.0         4   3.4e+03      13      33 ..    1031    1049 ..    1028    1052 .. 0.83
  13 ?    2.2   0.0      0.27   2.3e+02       2      31 ..    1100    1129 ..    1099    1137 .. 0.73
  14 !   10.1   0.0   0.00077      0.66       1      27 [.    1146    1170 ..    1146    1179 .. 0.86
  15 !   10.2   0.0   0.00072      0.61       6      32 ..    1197    1223 ..    1194    1227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
       TPR_7  4 nLarlysrlGdyeeAielyeqsLaltkd 31
                 L+ +y rl + e+ ++ y+++++l  d
  CDO72766.1 44 FLGLAYLRLDEVEKSEQAYRKAIELNPD 71
                69*******************5555444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8
       TPR_7   2 LlnLarlysrlGd 14 
                 L +Lar++ + +d
  CDO72766.1  96 LQALARIHAAAND 108
                 569*****98776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.9
       TPR_7  16 eeAielyeq 24 
                 ee+++lyeq
  CDO72766.1 182 EELVSLYEQ 190
                 799*****9 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.017
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 a ly+ +Gdye+Ai++ e 
  CDO72766.1 389 AKLYELEGDYENAIKVAES 407
                 789***********98776 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.21
       TPR_7  14 dyeeAielyeqsLaltkdped 34 
                 ++e+A+el+ + ++l  d+ d
  CDO72766.1 480 RWEDAAELFGKIIRLKPDDAD 500
                 8**********7777777665 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 4.9
       TPR_7   3 lnLarlysr..lGdyeeAielyeq 24 
                   L+r+y +    ++eeA +++  
  CDO72766.1 548 WKLGRCYWEmgADHREEAYKHFIT 571
                 569999999666667777666655 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 1.9
       TPR_7  14 dyeeAielyeqsLaltkdpeda 35 
                 d ++A +++++  a++ dp +a
  CDO72766.1 598 DPKRASKCFQK--AFELDPREA 617
                 568999*****..*****9887 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 1.4
       TPR_7  13 GdyeeAielyeqsLaltkdp 32 
                 ++y  Aie ++ +L+++ d+
  CDO72766.1 681 RNYPAAIEAFQIALRTEVDD 700
                 7999********88877775 PP

  == domain 9  score: 10.3 bits;  conditional E-value: 0.0007
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++l+L+++ys+ G+y+ A + +e+  a + dped
  CDO72766.1 703 SWLRLGEAYSKAGRYAAAFKALER--ARELDPED 734
                 689********************9..88888875 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.12
       TPR_7   4 nLarlysrlGdyeeAielyeqsLalt 29 
                  ++++++++G +ee i+ ++  La +
  CDO72766.1 740 FIGEVQRQMGAFEESIRAFRSILASR 765
                 689***************99966654 PP

  == domain 11  score: 2.7 bits;  conditional E-value: 0.18
       TPR_7   2 LlnLarlysrlGdye 16 
                 L+ L++ y +lG++e
  CDO72766.1 772 LHSLGQSYLDLGRFE 786
                 89***********98 PP

  == domain 12  score: -1.5 bits;  conditional E-value: 4
       TPR_7   13 GdyeeAielyeqsLaltkdpe 33  
                  G+ +eA  l+e   a+t + +
  CDO72766.1 1031 GHDREARALFEH--ATTLSAT 1049
                  7889********..9998765 PP

  == domain 13  score: 2.2 bits;  conditional E-value: 0.27
       TPR_7    2 LlnLarlysrlGdyeeAielyeqsLaltkd 31  
                  L+  + +++r+G+   Ai+l+ +++a+ ++
  CDO72766.1 1100 LHLFGLVCERVGHVTLAIDLFSRAIAVLEA 1129
                  556678899999999999999996655444 PP

  == domain 14  score: 10.1 bits;  conditional E-value: 0.00077
       TPR_7    1 aLlnLarlysrlGdyeeAielyeqsLa 27  
                  a++nLarl+ +  dye A+e y+   a
  CDO72766.1 1146 AHVNLARLRLSTADYEGALESYQV--A 1170
                  689*******************86..4 PP

  == domain 15  score: 10.2 bits;  conditional E-value: 0.00072
       TPR_7    6 arlysrlGdyeeAielyeqsLaltkdp 32  
                  + ++s+lG+ +eA+ l+e+++a++ d 
  CDO72766.1 1197 GLAHSKLGQLAEALALFEAAMATAADL 1223
                  679****************88877665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   2.2   0.00077      0.66       5      64 ..      15      74 ..      11      77 .. 0.94
   2 ?   -1.8   1.0       4.1   3.5e+03       2      25 ..     100     123 ..      99     141 .. 0.74
   3 ?   -2.3   0.0         6   5.1e+03       5      25 ..     392     412 ..     390     419 .. 0.78
   4 !   24.3   0.2   3.1e-08   2.6e-05       9      66 ..     445     502 ..     442     508 .. 0.93
   5 ?   -1.4   0.0       3.2   2.8e+03      37      56 ..     511     530 ..     504     546 .. 0.77
   6 ?    0.0   0.2       1.1   9.8e+02      45      69 ..     599     624 ..     597     628 .. 0.81
   7 !   18.2   1.6   2.4e-06    0.0021       6      62 ..     678     734 ..     674     739 .. 0.94
   8 ?    4.6   0.0     0.042        36      24      61 ..     730     767 ..     729     772 .. 0.91
   9 ?    1.9   0.1       0.3   2.6e+02      20      61 ..     974    1015 ..     972    1021 .. 0.91
  10 ?    0.8   0.4      0.63   5.4e+02       5      63 ..     993    1051 ..     989    1055 .. 0.78
  11 !    8.1   0.2    0.0033       2.8       2      60 ..    1070    1128 ..    1069    1141 .. 0.91
  12 ?   -1.7   0.0       3.8   3.3e+03      36      64 ..    1151    1179 ..    1147    1188 .. 0.66
  13 ?    3.2   0.2      0.11        98      36      62 ..    1197    1223 ..    1196    1231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00077
       TPR_9  5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64
                a+ ++d+e+a  ++  +l   Pd        Gl++ +l+ +++  ++   +++l+pd + 
  CDO72766.1 15 ALAKQDNEKARDAALGVLEYEPDNYNANVFLGLAYLRLDEVEKSEQAYRKAIELNPDQAL 74
                6789****************************************************9865 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.1
       TPR_9   2 kaiaireedweralavverlllla 25 
                  +i++ ++d+ ++ ++v+ l+ l 
  CDO72766.1 100 ARIHAAANDAVKCAEAVQKLIELR 123
                 679999*******99999999884 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6
       TPR_9   5 aireedweralavverlllla 25 
                 +  e d+e a++v+e+ l l 
  CDO72766.1 392 YELEGDYENAIKVAESGLELV 412
                 677899********9988875 PP

  == domain 4  score: 24.3 bits;  conditional E-value: 3.1e-08
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                 +++ ral++++ +l  +Pd ++ ++ RG++l++  +++ A++ +   ++l pd++d++
  CDO72766.1 445 KHHVRALRIIDDVLTEDPDNISALMARGFVLQHAKRWEDAAELFGKIIRLKPDDADIA 502
                 7999************************************************887754 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 3.2
       TPR_9  37 lllaqlGclsaAladLeayl 56 
                  + a +G+l+aA ++L   +
  CDO72766.1 511 WCAAMSGQLQAATEELREVI 530
                 5677899*******998766 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 1.1
       TPR_9  45 lsaAladLeaylalap.dapdaeair 69 
                 ++ A ++++ + +l+p +a++a++++
  CDO72766.1 599 PKRASKCFQKAFELDPrEAEAARRLA 624
                 56799999999999998788888776 PP

  == domain 7  score: 18.2 bits;  conditional E-value: 2.4e-06
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 + ++++++a+++ +  l    dd+  ++  G ++ + G+++aA ++Le++ +l+p++
  CDO72766.1 678 LTRRNYPAAIEAFQIALRTEVDDHMSWLRLGEAYSKAGRYAAAFKALERARELDPED 734
                 568999*************************************************98 PP

  == domain 8  score: 4.6 bits;  conditional E-value: 0.042
       TPR_9  24 laPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 l+P+d+   +  G ++ q+G++++ ++++   la  p+
  CDO72766.1 730 LDPEDWVASYFIGEVQRQMGAFEESIRAFRSILASRPH 767
                 789999999999******************99999886 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.3
       TPR_9   20 rllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61  
                  r l ++++ +  +   Gl + + ++ + A +++  +  l+pd
  CDO72766.1  974 RALEVDSKNAATWTNLGLFYLHHEDRQLANEAFYKAQTLDPD 1015
                  789999************************999999999887 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.63
       TPR_9    5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdap 63  
                  ++ +ed + a ++      l+Pd +  +   Gl+    G+ ++A+a +e++  l+   p
  CDO72766.1  993 YLHHEDRQLANEAFYKAQTLDPDYALAWIGQGLVATLNGHDREARALFEHATTLSATVP 1051
                  556666666666666666799***************************99987766555 PP

  == domain 11  score: 8.1 bits;  conditional E-value: 0.0033
       TPR_9    2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60  
                  k++a+++e +  a  v++r     P+d++ +   Gl+ +++G++  A++ + +++a+ +
  CDO72766.1 1070 KSRAASAEAFLPAFFVLDRYCKQRPKDARALHLFGLVCERVGHVTLAIDLFSRAIAVLE 1128
                  8899**************************************************98876 PP

  == domain 12  score: -1.7 bits;  conditional E-value: 3.8
       TPR_9   36 GlllaqlGclsaAladLeaylalapdapd 64  
                  ++l+    ++++Al+  + +  l p+ p+
  CDO72766.1 1151 ARLRLSTADYEGALESYQVATGLLPEEPT 1179
                  66666677777777777766666664443 PP

  == domain 13  score: 3.2 bits;  conditional E-value: 0.11
       TPR_9   36 GlllaqlGclsaAladLeaylalapda 62  
                  Gl++ +lG+l++Ala +ea++a a d 
  CDO72766.1 1197 GLAHSKLGQLAEALALFEAAMATAADL 1223
                  899*****************9987765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.98   8.4e+02       5      32 ..      10      37 ..       7      38 .. 0.76
   2 !    8.0   0.1    0.0058       4.9       6      32 ..      45      71 ..      44      71 .. 0.96
   3 ?   -0.4   0.1       2.8   2.4e+03       8      28 ..      81     101 ..      72     106 .. 0.70
   4 ?   -1.7   0.1       6.9   5.9e+03       6      28 ..      99     121 ..      94     122 .. 0.77
   5 ?    1.0   0.1      0.99   8.4e+02      21      33 .]     318     330 ..     317     330 .. 0.91
   6 ?    1.8   0.0      0.54   4.6e+02       7      24 ..     389     406 ..     388     407 .. 0.85
   7 ?    4.9   0.0     0.055        47       2      31 ..     467     496 ..     466     498 .. 0.85
   8 ?    3.4   0.0      0.17   1.4e+02       3      17 ..     547     562 ..     545     571 .. 0.76
   9 ?   -1.5   0.0       6.3   5.4e+03      15      27 ..     682     694 ..     669     696 .. 0.82
  10 !   13.2   0.3   0.00013      0.11       3      32 ..     704     733 ..     703     734 .. 0.92
  11 !    7.5   0.0    0.0086       7.3       2      31 ..     737     766 ..     736     768 .. 0.91
  12 ?   -0.8   0.0       3.7   3.2e+03      14      27 ..     838     851 ..     824     851 .. 0.69
  13 ?   -1.8   0.1       7.8   6.6e+03       1      24 [.    1016    1041 ..    1016    1043 .. 0.72
  14 ?    5.0   0.0     0.052        45       2      25 ..    1146    1169 ..    1146    1175 .. 0.87
  15 ?    5.7   0.5     0.031        27       2      26 ..    1192    1216 ..    1191    1222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.98
                HHH.HHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  5 kla.lsyrklgdtdkAlealerlikeYPd 32
                k+a +++ k+ d +kA++a   +++  Pd
  CDO72766.1 10 KAArEALAKQ-DNEKARDAALGVLEYEPD 37
                5564566678.*******99888888887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0058
                HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  6 lalsyrklgdtdkAlealerlikeYPd 32
                l+l+y++l++ +k+ +a+++ i+  Pd
  CDO72766.1 45 LGLAYLRLDEVEKSEQAYRKAIELNPD 71
                79*********************9998 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   8 lsyrklgdtdkAlealerlik 28 
                 ++y+k++++ + ++ l+ l +
  CDO72766.1  81 QLYEKQQNWPEYVKGLQALAR 101
                 345568899999999998876 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 6.9
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 la+ + +++d+ k  ea ++li+
  CDO72766.1  99 LARIHAAANDAVKCAEAVQKLIE 121
                 67777887888888888888876 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.99
                 HHHHHHHHH-TT- CS
       TPR_6  21 ealerlikeYPdS 33 
                 ++l+++i+ +P S
  CDO72766.1 318 ATLRQFIQLFPSS 330
                 689********98 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleale 24 
                 a++y+  gd+++A++  e
  CDO72766.1 389 AKLYELEGDYENAIKVAE 406
                 78999989******9765 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 Al+ ++  ++ ++++++A e++ ++i+  P
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGKIIRLKP 496
                 7778888899999************98655 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHH.HHH CS
       TPR_6   3 lyklalsyrklg.dtd 17 
                  +kl+++y ++g d++
  CDO72766.1 547 WWKLGRCYWEMGaDHR 562
                 68********864555 PP

  == domain 9  score: -1.5 bits;  conditional E-value: 6.3
                 HHHHHHHHHHHHH CS
       TPR_6  15 dtdkAlealerli 27 
                 ++ +A+ea++  +
  CDO72766.1 682 NYPAAIEAFQIAL 694
                 78899***99766 PP

  == domain 10  score: 13.2 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                  ++l+++y k+g++++A +aler ++  P+
  CDO72766.1 704 WLRLGEAYSKAGRYAAAFKALERARELDPE 733
                 69********99************998885 PP

  == domain 11  score: 7.5 bits;  conditional E-value: 0.0086
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 A y +++ +r++g  +++++a+++++ + P
  CDO72766.1 737 ASYFIGEVQRQMGAFEESIRAFRSILASRP 766
                 66889*********************9988 PP

  == domain 12  score: -0.8 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHH CS
       TPR_6  14 gdtdkAlealerli 27 
                  d ++A+e + r+i
  CDO72766.1 838 SDDETAREVFARVI 851
                 48899*****9997 PP

  == domain 13  score: -1.8 bits;  conditional E-value: 7.8
                  HHHHHHHHHHHH.H.HHHHHHHHHHH CS
       TPR_6    1 dAlyklalsyrk.l.gdtdkAleale 24  
                  +Al ++++ + + l g  ++A++++e
  CDO72766.1 1016 YALAWIGQGLVAtLnGHDREARALFE 1041
                  57777777777745467789999997 PP

  == domain 14  score: 5.0 bits;  conditional E-value: 0.052
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6    2 AlyklalsyrklgdtdkAlealer 25  
                  A  +la++++++ d++ Ale ++ 
  CDO72766.1 1146 AHVNLARLRLSTADYEGALESYQV 1169
                  6679*******55*********97 PP

  == domain 15  score: 5.7 bits;  conditional E-value: 0.031
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6    2 AlyklalsyrklgdtdkAlealerl 26  
                  +++  +l++ klg+ ++Al+++e  
  CDO72766.1 1192 CQLGSGLAHSKLGQLAEALALFEAA 1216
                  57889******99*********975 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.012        11      16      69 ..      32      86 ..      17     102 .. 0.82
   2 ?   -0.8   0.2       2.1   1.8e+03      28      66 ..      98     138 ..      72     141 .. 0.68
   3 ?    2.5   0.0       0.2   1.7e+02      20      50 ..     376     410 ..     369     420 .. 0.73
   4 ?    3.4   0.0      0.11        92      38      81 ..     446     490 ..     427     497 .. 0.84
   5 ?   -2.1   0.1       5.4   4.7e+03      51      77 ..     539     567 ..     505     570 .. 0.54
   6 !   16.5   0.0   8.8e-06    0.0075       3      80 ..     681     759 ..     679     761 .. 0.90
   7 ?   -2.8   0.1       9.2   7.9e+03      18      32 ..     997    1011 ..     972    1043 .. 0.64
   8 !    7.5   0.0    0.0057       4.8       8      49 ..    1082    1123 ..    1075    1131 .. 0.74
   9 ?    0.3   0.2      0.95   8.1e+02      57      67 ..    1184    1194 ..    1123    1216 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
                H.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT CS
      ANAPC3 16 laaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkL 69
                l++e++++++  +l+l+++++ + ++  + +rka +ln+    ++  + q + k+
  CDO72766.1 32 LEYEPDNYNANVFLGLAYLRLDEVEKSEQAYRKAiELNPDQALAWQGILQLYEKQ 86
                4789******************************999887776665555555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
                 HHHHHHHHTT-HHHHHHHHHCT.SHHHC-H.HHHHHHHHHH CS
      ANAPC3  28 llAlclylngqykrAyellrka.klnsksl.gcrylfAqcl 66 
                 +lA  +  +++  ++ e ++k+ +l+ ++  g r+ +A++l
  CDO72766.1  98 ALARIHAAANDAVKCAEAVQKLiELRRRTDlGNRMQLAEAL 138
                 56777777777777777777776665554446666666654 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.2
                 H--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.S CS
      ANAPC3  20 tespedayll...AlclylngqykrAyellrka.k 50 
                 t+ +++++++   A+ + l g+y+ A++++++  +
  CDO72766.1 376 TDLNNSILAHrvvAKLYELEGDYENAIKVAESGlE 410
                 55566666666669999999999999999987655 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.11
                 -HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  38 qykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  + rA++++++   +++ ++ +++  + +l   k++e+A  +++k
  CDO72766.1 446 HHVRALRIIDDVlTEDPDNISALMARGFVLQHAKRWEDAAELFGK 490
                 577899999999888888888888888999999999999999887 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 5.4
                 HHHC-HHHHHHHHHHHHHT..T-HHHHHH CS
      ANAPC3  51 lnskslgcrylfAqcllkL..kkyeeAia 77 
                  ++   +c+  +++c+ ++  ++ eeA++
  CDO72766.1 539 HEEDKARCWWKLGRCYWEMgaDHREEAYK 567
                 23334466666666666665555566655 PP

  == domain 6  score: 16.5 bits;  conditional E-value: 8.8e-06
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +ny  Ai  +  +l +e +++ + + l++++ ++g+y  A++ l++a +l++++  + y +++++ +++ +ee i+a+ 
  CDO72766.1 681 RNYPAAIEAFQIALRTEVDDHMSWLRLGEAYSKAGRYAAAFKALERArELDPEDWVASYFIGEVQRQMGAFEESIRAFR 759
                 688899999999997777777777778************************************************9986 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 9.2
                  HHH--HHHHHHHHHH CS
      ANAPC3   18 aetespedayllAlc 32  
                   +++ ++ a+++A++
  CDO72766.1  997 EDRQLANEAFYKAQT 1011
                  333444444444443 PP

  == domain 8  score: 7.5 bits;  conditional E-value: 0.0057
                  HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3    8 AiflaerllaaetespedayllAlclylngqykrAyellrka 49  
                  A f+++r++++ ++++ +++l++l+  + g  + A++l+++a
  CDO72766.1 1082 AFFVLDRYCKQRPKDARALHLFGLVCERVGHVTLAIDLFSRA 1123
                  677888888888888888888888877777777777777665 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.95
                  HHHHHHHHHHH CS
      ANAPC3   57 gcrylfAqcll 67  
                  ++ +l+Aqc+l
  CDO72766.1 1184 EAKVLLAQCQL 1194
                  45555555433 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         2   1.7e+03      78     124 ..      98     141 ..      73     142 .. 0.67
   2 ?   -0.3   0.0       0.9   7.7e+02     115     138 ..     467     490 ..     383     493 .. 0.52
   3 ?    5.4   0.1     0.016        14       2      58 ..     509     568 ..     508     591 .. 0.85
   4 !    8.5   0.1    0.0018       1.5      32      64 ..     697     729 ..     683     732 .. 0.89
   5 ?   -0.9   0.0       1.4   1.2e+03      30      62 ..     977    1009 ..     972    1014 .. 0.87
   6 ?    6.0   0.0      0.01       8.8      57     143 ..    1129    1220 ..    1112    1230 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
                 HHHHHHHHTT-HHHHHHHHHHHHCSSS---.HHHHHHHHHHHHHHHH CS
        RPN7  78 nlirvaiffndwdlvskylekakellekggdwerknrlkvyeGlall 124
                 +l r+  ++nd  +  + ++k+ el  +    +  nr++ +e+lall
  CDO72766.1  98 ALARIHAAANDAVKCAEAVQKLIELRRR---TDLGNRMQLAEALALL 141
                 4555666666666666666666666655...7888888888888875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.9
                 HHHHHHHHHHHTT-HHHHHHHHCT CS
        RPN7 115 lkvyeGlallairkfkeAaellld 138
                   ++ G  l + +++++Aael+ +
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGK 490
                 445666667777777777777765 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHHHCT..-HHHHHHH CS
        RPN7   2 ekwveelrkknekeleeLdaelkdak.enlgkeeirrakldlaehYlkig..dleeAlka 58 
                  +w+ +++ + ++ +eeL++ + + +  ++ +e+ +r++ +l++ Y ++g  ++eeA k 
  CDO72766.1 509 HAWCAAMSGQLQAATEELREVIGELEaIEGHEEDKARCWWKLGRCYWEMGadHREEAYKH 568
                 58***********************9889999**************99994346666665 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  32 keeirrakldlaehYlkigdleeAlkaysrire 64 
                 + +  + +l+l+e Y k+g ++ A+ka++r+re
  CDO72766.1 697 EVDDHMSWLRLGEAYSKAGRYAAAFKALERARE 729
                 566678899**********************98 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.4
                  T-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTC CS
        RPN7   30 lgkeeirrakldlaehYlkigdleeAlkaysri 62  
                  +++++ ++++ +l+ +Yl + d++ A +a+ ++
  CDO72766.1  977 EVDSKNAATWTNLGLFYLHHEDRQLANEAFYKA 1009
                  578889999*****************9998765 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.01
                  HHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---.......HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGG CS
        RPN7   57 kaysrireyctslkhkidmllnlirvaiffndwdlvskylekakellekggd......werknrlkvyeGlallairkfkeAaellldilstf 143 
                  +ay+++ ++++  +  i   +nl r+ +   d++ + +  + a  ll +         +   ++++  +Gla+ + ++ +eA  l+ ++ +t 
  CDO72766.1 1129 AAYEETEDPVIERQFTIAH-VNLARLRLSTADYEGALESYQVATGLLPEEPTegdaeaKVLLAQCQLGSGLAHSKLGQLAEALALFEAAMATA 1220
                  4677777777776666654.69999999999999999999999999877332555666677788**********************9988876 PP

>> TPR_22  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   4.7e-05      0.04      12      89 ..     173     249 ..     162     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
      TPR_22  12 hlitpqealkkLlkilskkeqeevsklvsrerlklsandpdyqikinslaWevykdsevdelynqLvni.vddDeeRrk 89 
                  + ++  +l++L+++ +++e++ + + +s+ r++l+a  p  qi+  +++ ev +ds++ +ly++++    + De Rr 
  CDO72766.1 173 AIYNSLPVLEELVSLYEQEEESVMENEISKRRMRLNAP-PTEQIR-RDVTLEVLSDSQLPRLYDEIMKHpNTSDEVRRA 249
                 56677789***************************986.445565.57999************9998651334555555 PP

>> PhnG  Phosphonate metabolism protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.7   3.2e+03      32      56 ..     400     424 ..     381     426 .. 0.75
   2 ?   11.1   1.3   0.00034      0.29      64     133 ..    1184    1253 ..    1182    1254 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.7
                 EEEEEEEEEEEEEEEEGGGTSSEEE CS
        PhnG  32 ellraPetglvmvrgraggtgepFn 56 
                 + ++ +e+gl +v+  ++  g+pF 
  CDO72766.1 400 NAIKVAESGLELVQRSEQDWGRPFK 424
                 578999********99999999996 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00034
                  EEEEEETTS-EEEEEEESS-HHHHHHHHHHHHHCTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGE CS
        PhnG   64 raavrledgtvGvayvlgrdkrkAelaAllDAllqtpereeeleaelieplearlaeeraaraaelaaTk 133 
                  +a+v l+++++G +++  +  + Ae++Al+ A+++t++  + ++ +++ +l+++l +  + +a+e a+T+
  CDO72766.1 1184 EAKVLLAQCQLGSGLAHSKLGQLAEALALFEAAMATAADLPVIRGHIVVRLAQTLWAVGTDEAKESAKTQ 1253
                  79999***************************************************99999999999996 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.7     0.025        21      45      87 ..      46      88 ..      17     135 .. 0.71
   2 ?    5.4   0.0    0.0085       7.2     205     254 ..     444     493 ..     386     509 .. 0.84
   3 ?    0.1   0.0      0.33   2.9e+02     233     259 ..     708     734 ..     678     748 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.025
                HHHHHHTT-HHHHHHHHHHHHHH-TT-CHHHHHHHHHT..SSS CS
       NARP1 45 aelllkLgrkeeAeatyeaLlernpenskYyeglekakklske 87
                +  +l+L++ e++e++y++ +e np++   ++g+ +  + +++
  CDO72766.1 46 GLAYLRLDEVEKSEQAYRKAIELNPDQALAWQGILQLYEKQQN 88
                566899*********************9999999888852222 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0085
                 HT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       NARP1 205 lgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeeark 254
                  ++  +Al++id  + ++p  +   ++++ +l+ha   ++Aae+  +  +
  CDO72766.1 444 PKHHVRALRIIDDVLTEDPDNISALMARGFVLQHAKRWEDAAELFGKIIR 493
                 455569***********************************998776555 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.33
                 HHHHHHTT-HHHHHHHHHHHHHCTTT- CS
       NARP1 233 arilkhaGdlkkAaevmeearklDlaD 259
                 ++ + +aG   +A +++e+ar+lD +D
  CDO72766.1 708 GEAYSKAGRYAAAFKALERARELDPED 734
                 667889999***************988 PP

>> TOM20_plant  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.7   7.4e+03      96     111 ..      55      70 ..      34      86 .. 0.55
   2 ?    0.1   0.0      0.69   5.9e+02      97     114 ..     600     617 ..     577     626 .. 0.75
   3 ?    7.1   0.0    0.0049       4.2      65     120 ..     901     956 ..     893     965 .. 0.86
   4 ?   -1.0   0.0       1.4   1.2e+03      14      79 ..    1003    1025 ..     975    1073 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.7
                  HHHHHHHHHHHHHH-T CS
  TOM20_plant  96 fekatqffqqavdedP 111
                   ek+ q +++a++ +P
   CDO72766.1  55 VEKSEQAYRKAIELNP 70 
                  2333333333333333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.69
                  HHHHHHHHHHHHH-TT-H CS
  TOM20_plant  97 ekatqffqqavdedPdnd 114
                  ++a+++fq+a++ dP + 
   CDO72766.1 600 KRASKCFQKAFELDPREA 617
                  579999999999999765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0049
                  -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH CS
  TOM20_plant  65 dPkkhdalWcignaytsfafltpdeeeakenfekatqffqqavdedPdndlyrksl 120
                  d  k  a + +g a  ++++ t d ++  +  ++a   f++a+  +P nd +  +l
   CDO72766.1 901 DGAKGTAFYDLGSALSTYSRRTLDGTKRDRAQQHAVAQFKEAIRLEPANDAFWVAL 956
                  56788999999999999999999999999999999999999999999999987666 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.4
                   HHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH CS
  TOM20_plant   14 aeatykknPldadnllrWggallelsqfqsvaeakqmiqdaiskleeallidPkkhdalWcignay 79  
                    ea yk + ld d  l W g                                              
   CDO72766.1 1003 NEAFYKAQTLDPDYALAWIG-------------------------------------------QGL 1025
                   34445555555555555543...........................................333 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.29   2.4e+02     267     298 ..      54      85 ..      18     112 .. 0.86
   2 ?    2.6   0.2     0.072        62     235     300 ..     534     594 ..     469     633 .. 0.81
   3 ?    4.5   0.0      0.02        17     149     182 ..     703     736 ..     689     758 .. 0.88
   4 ?   -3.1   0.2       4.2   3.5e+03     274     298 ..     971     995 ..     968    1021 .. 0.59
   5 ?   -0.4   0.0      0.62   5.3e+02     267     332 ..    1032    1126 ..    1023    1134 .. 0.81
   6 ?   -0.8   0.0       0.8   6.9e+02     231     282 ..    1174    1220 ..    1142    1227 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.29
                 .-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHH CS
         FAT 267 kieeilqsysaateidpswykawhtwalfnfe 298
                 ++e+ +q+y++a e++p+++ aw    +++++
  CDO72766.1  54 EVEKSEQAYRKAIELNPDQALAWQGILQLYEK 85 
                 588999*****************876666655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.072
                 ........HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCC CS
         FAT 235 tnleeftkllarcylkkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfevv 300
                 + +e  ++ +arc  k+G   ++++      +++ee+ +++ ++ + + + + a+ +++l++ e +
  CDO72766.1 534 EAIEGHEEDKARCWWKLGRCYWEMGA-----DHREEAYKHFITSLKRSATFASAFTSLGLYYSEFL 594
                 45566677778999999998888888.....35888888888888888888888888888888765 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.02
                 CCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.... CS
         FAT 149 mwlkfanlarksgrlslAekaLkelleedpeewl 182
                  wl+  +   k+gr+  A kaL +++e dpe+w 
  CDO72766.1 703 SWLRLGEAYSKAGRYAAAFKALERARELDPEDWV 736
                 699***************************8885 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4.2
                 HHHCCHHCTCCCHSTTCCCCHHHHH CS
         FAT 274 sysaateidpswykawhtwalfnfe 298
                 sy +a e+d + + +w +++lf+ +
  CDO72766.1 971 SYIRALEVDSKNAATWTNLGLFYLH 995
                 5666666666666666666666543 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.62
                  .-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS..............................S-TCCHHHHCCT..CCHHHHT CS
         FAT  267 kieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeee.............................pedlqeyvvpavkgflksisl 332 
                  + +e+ + +  at ++ ++ +a  + a   f++++  ++++  +                                +   +v+ a++ f ++i+ 
  CDO72766.1 1032 HDREARALFEHATTLSATVPEADLEYATRLFKQINVSTKSRAASAeaflpaffvldryckqrpkdaralhlfglVCERVGHVTLAIDLFSRAIAV 1126
                  46789999***************************998885555567888888888888888888877777777444556999999999999886 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.8
                  .............HH.HHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCT CS
         FAT  231 q.keptnleeftkll.arcylkkGewqealqkldwseekieeilqsysaateid 282 
                    +ept+    +k l a+c l +G   ++l++         e+l+ + aa  ++
  CDO72766.1 1174 LpEEPTEGDAEAKVLlAQCQLGSGLAHSKLGQ-------LAEALALFEAAMATA 1220
                  2447777777777777****************.......788888888877655 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.63   5.4e+02      24      51 ..       7      34 ..       5      63 .. 0.83
   2 ?   -2.3   0.2       6.7   5.7e+03      37      52 ..     111     126 ..      81     140 .. 0.65
   3 ?    7.6   0.2    0.0054       4.6       8      61 ..     451     504 ..     445     528 .. 0.87
   4 ?   -1.7   0.1       4.4   3.7e+03      24      54 ..     505     535 ..     495     545 .. 0.70
   5 ?   -0.2   0.0       1.6   1.3e+03      33      55 ..     557     579 ..     553     584 .. 0.88
   6 ?    8.3   0.0    0.0033       2.8       7      45 ..     686     724 ..     681     728 .. 0.93
   7 ?    1.3   0.0      0.53   4.5e+02       9      51 ..     722     764 ..     721     778 .. 0.91
   8 ?   -1.8   0.0       4.8   4.1e+03      13      49 ..    1088    1124 ..    1085    1137 .. 0.83
   9 ?   -2.1   0.0       5.8     5e+03      24      43 ..    1146    1165 ..    1121    1167 .. 0.79
  10 ?   -1.7   0.2       4.3   3.7e+03      54      66 ..    1244    1256 ..    1177    1262 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.63
      TPR_20 24 arldlAlallaagryeeAleqLleilkr 51
                 +l+ A+  la++++e+A ++ l +l+ 
  CDO72766.1  7 SKLKAAREALAKQDNEKARDAALGVLEY 34
                5788899999999999999988888765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.7
      TPR_20  37 ryeeAleqLleilkrd 52 
                 + +eA+++L+e+ +r+
  CDO72766.1 111 KCAEAVQKLIELRRRT 126
                 4566666666665554 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0054
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                 l+ +++ l+++pd++ a ++   +l +a+r e+A+e++ +i++ + +++d a r
  CDO72766.1 451 LRIIDDVLTEDPDNISALMARGFVLQHAKRWEDAAELFGKIIRLKPDDADIASR 504
                 556778899********************************9988887765555 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 4.4
      TPR_20  24 arldlAlallaagryeeAleqLleilkrdrk 54 
                 a+ + A   ++ g+ ++A e+L e++ +  +
  CDO72766.1 505 AKEEHAWCAAMSGQLQAATEELREVIGELEA 535
                 5566777788999999****99999876554 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 1.6
      TPR_20  33 laagryeeAleqLleilkrdrkw 55 
                 + a ++eeA +++++ lkr  ++
  CDO72766.1 557 MGADHREEAYKHFITSLKRSATF 579
                 56889*************99877 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0033
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqL 45 
                  +++++ al ++ dd+   l l +a+ +agry++A+++L
  CDO72766.1 686 AIEAFQIALRTEVDDHMSWLRLGEAYSKAGRYAAAFKAL 724
                 6899999*****************************998 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.53
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilkr 51 
                 ++le+a + +p+d  a +   +++ + g  ee++ ++ +il++
  CDO72766.1 722 KALERARELDPEDWVASYFIGEVQRQMGAFEESIRAFRSILAS 764
                 579999999*************************999888875 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 4.8
      TPR_20   13 aalaanpddldarldlAlallaagryeeAleqLleil 49  
                  + ++++p+d  a +   l+    g++  A++++ + +
  CDO72766.1 1088 RYCKQRPKDARALHLFGLVCERVGHVTLAIDLFSRAI 1124
                  567899********99999999999999999876655 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 5.8
      TPR_20   24 arldlAlallaagryeeAle 43  
                  a+++lA++ l+  +ye Ale
  CDO72766.1 1146 AHVNLARLRLSTADYEGALE 1165
                  66789999999999999987 PP

  == domain 10  score: -1.7 bits;  conditional E-value: 4.3
      TPR_20   54 kweddaarkqllk 66  
                  ++++++a++qll+
  CDO72766.1 1244 DEAKESAKTQLLQ 1256
                  2234555555555 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.036        31       8      31 ..      45      68 ..      44      69 .. 0.95
   2 ?    2.8   0.0      0.14   1.2e+02       4      30 ..     467     493 ..     465     495 .. 0.84
   3 ?    7.8   1.3    0.0036       3.1       8      30 ..     707     729 ..     705     730 .. 0.92
   4 ?   -1.8   0.0       3.9   3.3e+03       9      30 ..     742     763 ..     741     765 .. 0.82
   5 ?    0.6   0.0      0.68   5.8e+02       3      19 ..     770     786 ..     769     788 .. 0.89
   6 ?   -0.4   0.0       1.4   1.2e+03      15      28 ..    1030    1043 ..    1024    1050 .. 0.81
   7 ?   -1.2   0.0       2.5   2.1e+03       2      37 ..    1097    1132 ..    1097    1137 .. 0.79
   8 ?   -2.6   0.1       6.8   5.8e+03      10      33 ..    1152    1168 ..    1146    1172 .. 0.55
   9 ?   11.0   0.3   0.00036       0.3       9      31 ..    1197    1219 ..    1189    1223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.036
      TPR_10  8 LanalrqrgrydeAealleealai 31
                L+ a+ ++ + +++e+ +++a+++
  CDO72766.1 45 LGLAYLRLDEVEKSEQAYRKAIEL 68
                99********************86 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.14
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 +l   + +l++ +r+++A +l+ + ++
  CDO72766.1 467 ALMARGFVLQHAKRWEDAAELFGKIIR 493
                 66667899*************988776 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0036
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 L+ a+++ gry++A + le+a +
  CDO72766.1 707 LGEAYSKAGRYAAAFKALERARE 729
                 9*******************965 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.9
      TPR_10   9 analrqrgrydeAealleeala 30 
                 + + rq+g ++e+ + ++  la
  CDO72766.1 742 GEVQRQMGAFEESIRAFRSILA 763
                 77899*******9998887776 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.68
      TPR_10   3 sslnNLanalrqrgryd 19 
                   l+ L+  + ++gr++
  CDO72766.1 770 GVLHSLGQSYLDLGRFE 786
                 5799***********86 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.4
      TPR_10   15 rgrydeAealleea 28  
                   g   eA+al+e+a
  CDO72766.1 1030 NGHDREARALFEHA 1043
                  57789*******99 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2.5
      TPR_10    2 AsslnNLanalrqrgrydeAealleealairrrllG 37  
                  A++l+  + +  ++g  + A +l+ +a+a+ +++++
  CDO72766.1 1097 ARALHLFGLVCERVGHVTLAIDLFSRAIAVLEAAYE 1132
                  5677777777778888888999999*****999987 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 6.8
      TPR_10   10 nalrqrgrydeAealleealairr 33  
                  ++  ++       a++e al+ ++
  CDO72766.1 1152 RLRLST-------ADYEGALESYQ 1168
                  444444.......45555555554 PP

  == domain 9  score: 11.0 bits;  conditional E-value: 0.00036
      TPR_10    9 analrqrgrydeAealleealai 31  
                  + a++++g+++eA+al+e a+a+
  CDO72766.1 1197 GLAHSKLGQLAEALALFEAAMAT 1219
                  789******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.54
# Mc/sec: 7572.00
//
Query:       CDO72767.1  [L=1130]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-252  838.1   0.1   3.3e-252  837.8   0.1    1.1  1  Chitin_synth_2   Chitin synthase
    7.5e-15   55.4   0.1    3.1e-13   50.2   0.0    2.3  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.3e-12   48.1   7.9    1.3e-12   48.1   7.9    2.6  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    0.00077   19.0   0.1      0.048   13.1   0.0    2.3  2  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.048   13.5   0.0       0.57   10.0   0.0    2.3  2  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  837.8   0.1  9.2e-256  3.3e-252       3     526 ..     423     938 ..     421     939 .. 0.98

  Alignments for each domain:
  == domain 1  score: 837.8 bits;  conditional E-value: 9.2e-256
  Chitin_synth_2   3 tiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspkedvep 97 
                     t+++++ + +++++  +++  ++f++clvt+ysege++lrttlds+++t y d+rkll+vv+dG+i+G+G+++stP+i+++ll+ a+ ++ ++ p
      CDO72767.1 423 TLVNSDSSVAPVMSLAQIG-AELFAVCLVTCYSEGEDSLRTTLDSISTTSYADSRKLLFVVADGMITGAGEKRSTPDICVSLLE-ADPRFGNPVP 515
                     5666667777888888888.789************************************************************9.9999****** PP

  Chitin_synth_2  98 lsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpsea.sekkPGnrGkrdsqiilmsflekvtfdermteleyelfkki 191
                     +sy+av++G k +n+a+vyaG+y++ +         +r+P+++vvk+Gt++ea +ekkPGnrGkrdsq+ilm+f+++vt+++rmt+l+++lf+ki
      CDO72767.1 516 MSYNAVGSGAKAENRAMVYAGHYTVAG---------RRTPTVIVVKCGTEAEAaTEKKPGNRGKRDSQLILMNFFSRVTYNDRMTPLDFDLFRKI 601
                     ************************997.........89*************973689************************************** PP

  Chitin_synth_2 192 kkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGcfslyri 286
                     + ++Gv+pd++e++lmvdadtkv+pdsl+ lv+++++d++i+g+cGet+iank++swvtaiqvfey+ishh +kafesvfG+v+clPGcfs++r+
      CDO72767.1 602 HVLMGVTPDYFEVCLMVDADTKVYPDSLKYLVNCMHHDQMIMGVCGETRIANKRQSWVTAIQVFEYFISHHNAKAFESVFGGVSCLPGCFSMFRL 696
                     *********************************************************************************************** PP

  Chitin_synth_2 287 kaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvhnllel 381
                     ka+k++ ++w P++++peiv+eys++vv tlh+knllllGedr+ltt+ll+tfp+rk++f+pqakc+tv+Pdtf+vllsqrrrwinst+hnl+el
      CDO72767.1 697 KARKSSGDDWIPLIIKPEIVKEYSQSVVTTLHEKNLLLLGEDRFLTTILLRTFPNRKMMFLPQAKCRTVVPDTFSVLLSQRRRWINSTIHNLMEL 791
                     *********************************************************************************************** PP

  Chitin_synth_2 382 vlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilk..sklvpviplvllaivlGlpailivltarkleyvawllvyllalPifnf 474
                     vlvr+lcGtfcfsm+fvvf++l+gtvvlP+ai +t +li+ ++l+  ++++++iplvll +vlGlpa+li++t+rk++y+ w+l+yl+alP++nf
      CDO72767.1 792 VLVRNLCGTFCFSMQFVVFMDLLGTVVLPIAISLTYMLIIGMALNppRTFEEAIPLVLLIAVLGLPAVLILITTRKVVYIFWMLIYLVALPVWNF 886
                     ********************************************977899********************************************* PP

  Chitin_synth_2 475 vlPlyafwhlddfswGetrvveGekkkkaageaegefdsskivlkrfeefer 526
                     vlP+yafwh+ddfswGetr+veGe k + +g+    +   +++++r+e++er
      CDO72767.1 887 VLPVYAFWHFDDFSWGETRKVEGEAKGEGHGDGVHAHGANNVPMRRWEDWER 938
                     **************************************************98 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.022        80       6      46 ..     448     497 ..     445     552 .. 0.62
   2 !   50.2   0.0   8.6e-17   3.1e-13      88     228 ..     612     781 ..     553     783 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.022
  Glyco_tranf_2_3   6 vlVptfneed.vlgevlesllaqey.prvevvvvv.......desdaetl 46 
                      +lV+++ e +  l+ +l+s+++ +y ++ ++ +vv        +++++t 
       CDO72767.1 448 CLVTCYSEGEdSLRTTLDSISTTSYaDSRKLLFVVadgmitgAGEKRSTP 497
                      89******9957777******99997444444444334443333444554 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 8.6e-17
  Glyco_tranf_2_3  88 sdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvfll..n.rstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele. 176
                      +++ l+vD+Dt v Pd+lk+l++ + +++ +++g++ +++  n r+++v+a + +e+ + h++  a+   +g v +l G +s++r +  k  + 
       CDO72767.1 612 FEVCLMVDADTKVYPDSLKYLVNCM-HHDQMIMGVCGETRiaNkRQSWVTAIQVFEYFISHHNAKAFESVFGgVSCLPGCFSMFRLKARKSSGd 704
                      67899*******************9.88888888777774334499************************9879******************** PP

  Glyco_tranf_2_3 177 ......................gldp.lflltdDyelglrlrr..agfrtayvpgaavrevfpsslkayikqrnRwv 228
                                            ++ + l ll++D +l+  l r   + ++ ++p+a +r+v p++++ +  qr+Rw+
       CDO72767.1 705 dwipliikpeivkeysqsvvttLHEKnLLLLGEDRFLTTILLRtfPNRKMMFLPQAKCRTVVPDTFSVLLSQRRRWI 781
                      ********************9655558999*************999******************************7 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.66   2.4e+03     138     181 ..     315     361 ..     312     368 .. 0.61
   2 !   48.1   7.9   3.5e-16   1.3e-12       3     195 ..     616     833 ..     614     895 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.66
  Glyco_trans_2_3 138 kRwayGc..eleklillvrllgylgsllwsa.lplhlallllfslla 181
                      +R++ G+  ++ + +   +l+ y+g++++ + ++++++++ +f++++
       CDO72767.1 315 ERYYAGNidKITPGCVVSQLVLYAGLIVVLSlVLVRFFMACIFNWFM 361
                      58888874333566644455566666655441456667777777764 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 3.5e-16
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaelas.pevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg...... 88 
                      l++DaDt + pd+l+++++ +++ + +  v+g + ++  +++w++ ++++++ ++h ++  + + +g+v  ++G  +++r++a ++ g      
       CDO72767.1 616 LMVDADTKVYPDSLKYLVNCMHHdQMIMGVCGETRIAnKRQSWVTAIQVFEYFISHHNAKAFESVFGGVSCLPGCFSMFRLKARKSSGddwipl 709
                      789*******************7255666666666653799***********9*******************************9887887777 PP

  Glyco_trans_2_3  89 .................gwdgdessvsEDfdmglrlqrkG..yrvrfvpeslvkekspltlraalrQrkRwayGc..eleklillvrllgylgs 161
                                         + +   ++ED ++   l+r     +  f p++ +++++p+t+   l Qr+Rw+     +l++   lv  + + g+
       CDO72767.1 710 iikpeivkeysqsvvttLHEKNLLLLGEDRFLTTILLRTFpnRKMMFLPQAKCRTVVPDTFSVLLSQRRRWINSTihNLME---LVLVRNLCGT 800
                      7777777776666666433344449****9999999888777999*****************************5332222...2222222222 PP

  Glyco_trans_2_3 162 llwsalplhlallllfsllalalvlllllllaal 195
                      ++ +++ + +++ ll  ++  +++ l ++l +++
       CDO72767.1 801 FC-FSMQFVVFMDLLGTVVLPIAISLTYMLIIGM 833
                      22.2222222222333333333333333333332 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.3e-05     0.048      23     111 ..     604     697 ..     594     704 .. 0.77
   2 ?    3.4   0.0     0.013        46     126     172 ..     735     781 ..     733     782 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
  Glyco_transf_21  23 lqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaaflntl....agvlqaklsglgfavGksmalrre 111
                      l +++    ++ ++ D+d+ v pd L+ l++ + + + +  V++  + +++++ + +  ++f ++     a+++ + ++g+++  G + ++r +
       CDO72767.1 604 LMGVTPDYFEVCLMVDADTKVYPDSLKYLVNCMHHdQMIMGVCGETRIANKRQSWVTAIQVFEYFIshhnAKAFESVFGGVSCLPGCFSMFRLK 697
                      5555666678999********************9845667799999988888888888888864322223666666779*******99999965 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.013
  Glyco_transf_21 126 LAeDyalgkllraa..GlkvvlspapiaqtsvprrsslrallaRqlrWa 172
                      L eD +l+++l +   + k+++ p++ ++t vp+  +++ ll++  rW 
       CDO72767.1 735 LGEDRFLTTILLRTfpNRKMMFLPQAKCRTVVPD--TFSVLLSQRRRWI 781
                      78*********99999****************97..9***********6 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   4.6e+02       3      36 ..     449     484 ..     448     509 .. 0.80
   2 ?   10.0   0.0   0.00016      0.57      82     165 ..     614     698 ..     607     702 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
                      EEEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEE CS
  Glycos_transf_2   3 viptyNe.ektlletlesllaq.dpypdfeiivvDD 36 
                       +++y e e+ l+ tl+s+    + ++++ ++vv D
       CDO72767.1 449 LVTCYSEgEDSLRTTLDSISTTsYADSRKLLFVVAD 484
                      589***************998855555555555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00016
                      EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS...EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHH CS
  Glycos_transf_2  82 yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv...generlyfkerkrslkgnlsfeigsaallrrea 165
                      + l +DaD+ + pd l+ lv+ +++d+   ++g    ++  +++ ++ + +   ++     + +   s +g++s+  g+++++r +a
       CDO72767.1 614 VCLMVDADTKVYPDSLKYLVNCMHHDQM--IMGVCGETRIANKRQSWVTAIqvfEYFISHHNAKAFESVFGGVSCLPGCFSMFRLKA 698
                      67899********************766..555555555555555555555455666666666777788889999999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 7781.60
//
Query:       CDO72768.1  [L=328]
Description: hypothetical protein BN946_scf184994.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-05   23.2   0.0     0.0001   22.1   0.0    1.5  1  DSPc             Dual specificity phosphatase, catalytic doma
    0.00026   21.2   0.0    0.00056   20.1   0.0    1.5  2  PTPlike_phytase  Inositol hexakisphosphate
     0.0049   16.5   0.0     0.0079   15.9   0.0    1.3  1  CDKN3            Cyclin-dependent kinase inhibitor 3 (CDKN3)
  ------ inclusion threshold ------
      0.019   14.5   0.4      0.083   12.4   0.4    1.9  1  Y_phosphatase    Protein-tyrosine phosphatase
      0.057   13.4   0.0      0.091   12.7   0.0    1.2  1  Y_phosphatase3   Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.9e-08    0.0001      61      97 ..     196     232 ..     171     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.9e-08
                 HHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHHH CS
        DSPc  61 eavefidkakqkgkkvlVHCqaGisRSatliiaYlmk 97 
                  +++ id+ + +g  vlVHC+ G+ R + +++++ +k
  CDO72768.1 196 HLSKLIDAYTLRGSAVLVHCRGGVGRAGIIAACWALK 232
                 467899***************************9887 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.6e-07   0.00056      92     153 ..     166     230 ..     136     232 .. 0.84
   2 ?   -3.4   0.0       2.5     9e+03      85     104 ..     286     305 ..     256     309 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
                      HHHHHHTT-EEEEEEE-TTS---.HHHHHHHHHHHHTS-T..T-EEEEE-SSSSHHHHHHHHHHH CS
  PTPlike_phytase  92 relaeelslrYaRipitdekape.eedfdalvsilkeape..ktalvfnCqmGrgRTTtamviat 153
                      r++a e++++  Ripi++   p+ +  +d+ +s l +a +   +a++++C+ G+gR  +  ++  
       CDO72768.1 166 RQVAGEFGIDILRIPIPEGLPPNdPAALDSHLSKLIDAYTlrGSAVLVHCRGGVGRAGIIAACWA 230
                      7888999***************72689**9999988884445**************988887765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
                      ...EE-HHHHHHHTT-EEEE CS
  PTPlike_phytase  85 tpeevyerelaeelslrYaR 104
                      +  e ye+ ++    ++Y R
       CDO72768.1 286 KAIETYEQVKFLVDFVEYLR 305
                      44456666666666666665 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0079      92     158 ..     165     233 ..     139     237 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
                 HHHHHHHTT-EEEE----TTS---HHHHH.HHHHHHHHHHH.TT--EEEE-SSSSSHHHHHHHHHHHHH CS
       CDKN3  92 lldlyqqygivthhhpiadggtpdiascl.eimeelatclk.nyrktlihcygglgrsclvaaclllyl 158
                   ++  ++gi   + pi++g  p+  ++l   + +l  +        l+hc gg+gr+ ++aac  l l
  CDO72768.1 165 YRQVAGEFGIDILRIPIPEGLPPNDPAALdSHLSKLIDAYTlRGSAVLVHCRGGVGRAGIIAACWALKL 233
                 555556677777788888888775544441445555544331345689****************98876 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   2.3e-05     0.083     160     190 ..     198     228 ..     181     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                    HHHHHHHSTTSS-EEEECSSSSHHHHHHHHH CS
  Y_phosphatase 160 rkvekskeaksgpvvVhCsaGvgRtgtfval 190
                    +k+    + + + v+VhC  GvgR+g+++a 
     CDO72768.1 198 SKLIDAYTLRGSAVLVHCRGGVGRAGIIAAC 228
                    4444444566789*************98764 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05     0.091     113     146 ..     196     234 ..     167     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
  Y_phosphatase3 113 vfealad.ee....pvlfHCtaGKDRTGvlaalllsllG 146
                      + +l+d  +    +vl+HC  G  R G++aa     lG
      CDO72768.1 196 HLSKLIDaYTlrgsAVLVHCRGGVGRAGIIAACWALKLG 234
                     455555532255679****************98776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2424.76
//
Query:       CDO72769.1  [L=272]
Description: hypothetical protein BN946_scf184994.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1930.73
//
Query:       CDO72770.1  [L=144]
Description: hypothetical protein BN946_scf184994.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1022.91
//
Query:       CDO72771.1  [L=574]
Description: hypothetical protein BN946_scf184994.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3861.69
//
Query:       CDO72772.1  [L=2159]
Description: hypothetical protein BN946_scf184994.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-99  333.2   0.0    5.6e-98  328.3   0.0    2.4  1  DOCK_N    DOCK N-terminus
    2.1e-76  257.7   0.0    6.4e-76  256.1   0.0    1.7  1  DHR-2     Dock homology region 2
      2e-58  197.4   0.0    3.5e-56  190.1   0.0    2.7  2  DOCK-C2   C2 domain in Dock180 and Zizimin proteins


Domain annotation for each model (and alignments):
>> DOCK_N  DOCK N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.3   0.0  9.3e-102   5.6e-98       1     377 []     238     656 ..     238     656 .. 0.92

  Alignments for each domain:
  == domain 1  score: 328.3 bits;  conditional E-value: 9.3e-102
      DOCK_N   1 pslkigdetvvsaeeplvdEiascLREWhsllkelllkrkyelfdklsklieeLdlaRrqlLsgvltadelkelrektvwrLvrgNkllglDviVRdpe 99 
                 p l+ gd+tv++ae+p++dEias+LREWh+l+ ++l++r+y+lf+ +++ ie L+l RrqlLs +l+++e+ +lr+                viVR+p+
  CDO72772.1 238 PTLTSGDDTVSGAEQPIIDEIASALREWHALMFQYLAQRDYRLFHIVREYIEVLHLGRRQLLSRTLSSEETVNLRH----------------VIVRHPT 320
                 67899*********************************************************************97................99***** PP

      DOCK_N 100 grgrvdtded.........Svvelyklqsemalldespkikeeksr..................................................... 136
                 ++g+v++d +         S+v++y+lq+++a +d+sp ++   ++                                                     
  CDO72772.1 321 WGGLVNVDVEgeidprswmSAVRMYALQAALAHMDVSPPPNH-PYKiphyggsidytgapnpvplsatiphsatiplsasihsafpdlprprghsrlig 418
                 *************************************99998.55579*************************************************** PP

      DOCK_N 137 ...sekseseaaslhhllldlksfvga..slgeeaelffsLydkkeskflsEnflvrlnksglpkelaksleklrtLFtDLsskDlgdareklyLVvki 230
                     ++ ++++a+++h++ld+++fv++   +ge+ael+fsLy+k++++f+sE+f+ +ln++g+++++   + ++rtLFtDL ++D++d    +yLV+ki
  CDO72772.1 419 slsPSAPSPQRAKFYHVFLDVRAFVASpcGPGETAELYFSLYNKADARFVSEDFCAVLNHNGVLARDPS-A-RIRTLFTDLVQSDAQD---PIYLVCKI 512
                 **999999999*****************9****************************************.5.**************88...******** PP

      DOCK_N 231 vrngrvsmelkskkkrsassrsesaskk....seekeessetsesssakkektvrRpfGvavldlsdlkg....lkqsdeekehvlkiyvpenesdfdq 321
                 vrng+  ++++s+ +  ++ ++++        s    ++++ +++s+++  +++rRpfG+avl+l++l++    +++ +++keh+++iyvp+ne +f +
  CDO72772.1 513 VRNGS--LKMGSNMGPISEYNRTT---MigsnSFGGLSNDSFPRNSTSDGPQQFRRPFGCAVLELTQLSAmaaeQAEVSSTKEHTMPIYVPTNETTFTM 606
                 ***99..77774433333333333...23334444445555559999999******************445888888899******************* PP

      DOCK_N 322 lhediiksrtkkyekspraeglqVsLklfhgdleqlrkenptllrgvaltrKlGFp 377
                 lh+di++ + ++      ae+l+Vs+k+f+gd+++++ken++ll++++lt +lGFp
  CDO72772.1 607 LHQDILNHNVRE------AEMLAVSIKIFYGDAQTVVKENSSLLQDTPLTLRLGFP 656
                 *******99999......99***********************************9 PP

>> DHR-2  Dock homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1   0.0   1.1e-79   6.4e-76      10     526 ..    1499    1995 ..    1493    1997 .. 0.84

  Alignments for each domain:
  == domain 1  score: 256.1 bits;  conditional E-value: 1.1e-79
       DHR-2   10 knfarvklqviialsklvseedelneerlkeslktinsyaksdkelkessfpeqvkellkrlrtvlkatvkmk.....eekedpemladlqyslans 101 
                  + f++++ +++ +l+ l ++  + ++ +   ++  ++ + +  ++  ++++ ++v+++l+ ++ +l+ +++++     ee+ d +++a+l   l+n+
  CDO72772.1 1499 QGFEHIENELVSKLDVLFMSDSKGDDISRGFFIGHLTHLFE--SSDIDEELRTRVMDFLESVNVFLQLLLSVRalpegEEFADDRVMATLR--LMNF 1591
                  56899999999999999999855444444444555555555..222344567778888888877777777777667779999999999999..6699 PP

       DHR-2  102 yk..sspdlritwLeslaekhaenenfsEaaqclihaaaLiaeylkllkkipkklgasaFekispnvlkeesesasalkedsgvcdseefteeglve 196 
                  ++     +++i+++++l ++h +++n++Eaa +l ++a+L+               +++F    + +   +++s++ +ke                +
  CDO72772.1 1592 IRriGRDEMYIKYVHQLVNMHLQSQNYVEAALTLKLHADLYDWD------------LNSFLPPMEDLG-LPQQSQFHRKE----------------T 1659
                  997455***********************************943............444544444443.55567778888................8 PP

       DHR-2  197 llekaiellkkgelyElaielykll.iplyekkrdykklseihkklaelyekivetsksekRlfgtYyRVgFyGkkF.eeldgkeyvYkepkltrLs 291 
                  l+  + ++l kg+ +E a +++k l ++  e + +y++l+ei+++ a l e+i++    ++R+ + Y+RV+FyG+ F +  ++k+++Y++ ++++ +
  CDO72772.1 1660 LCLLILDYLGKGKAWETAYQICKDLeSKHAEITFNYTRLAEILRHRAALLEHIIT----DQRYYSDYFRVAFYGN-FpNAIQNKQFIYRGYEWEKFG 1751
                  999*******************99945677889**********************....***************8.77******************* PP

       DHR-2  292 eiserlksqysekfgeekveiikdskpvdkseldpdkaYiqitaVePyfeeeel.k.......erktsFernnnvnrFvfetPFtksgkkaqgslee 380 
                  +++er++++++ +      ++ + + pvd +    + +Yiq+taV+P +   +l          ++  ++++ ++n F +++P tk      +  ee
  CDO72772.1 1752 AFCERMLNKHPGAQLL---KT-MGDPPVDIR--FGNDQYIQCTAVTPEPRR-DLpIftnpdvpPQVRAYYEHSDINLFSYSRPVTKLA---PDGTEE 1838
                  ***********99993...44.456777543..4568*********96654.332244667779999*******************98...4689** PP

       DHR-2  381 qwkrrtiLttensfPylkkRlevvskeeielsPievaieeiekkteeleaaikae........ppnlktLqmlLqGsvavqVNaGpleiaeaFLsee 469 
                   w ++t Ltte++fP++++R+ v++ ++++lsP+e a+ e+e++t+el+ + ++         ++ ++ L m L+  v++  N+G+ +  ++FLse+
  CDO72772.1 1839 VWVEKTYLTTEQYFPTVLRRSDVIHVQVVNLSPVETALMEVEQRTRELAGLNQKYsalaktaqHVSTNALAMSLNAAVDAPLNSGVGAFRQVFLSED 1935
                  ************************************************9988874478888888********************************* PP

       DHR-2  470 ...kakelpaekvekLkeafreflkvckeaLelnkklikedqrelqeeLeegfek.lkekL 526 
                       ++ +ae v kL++a+ e++++++ +L+l+ +l+ +++ +++ +Le++f+k +++++
  CDO72772.1 1936 yleRFPD-RAENVAKLRNAIDEQVRMIDSCLKLHGQLCPPEMLPFHATLEKFFHKnFADEI 1995
                  8855555.899******************************************98677666 PP

>> DOCK-C2  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0     0.005        30     108     151 ..     558     605 ..     545     634 .. 0.70
   2 !  190.1   0.0   5.9e-60   3.5e-56       1     194 [.     661     876 ..     661     877 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.005
     DOCK-C2 108 keeeekpfgyaflpLlk.....edgraflkdgehelpvykkelppsgYl 151
                  ++ ++pfg a+l L++      ++  + +++eh++p+y   ++++ + 
  CDO72772.1 558 PQQFRRPFGCAVLELTQlsamaAEQAEVSSTKEHTMPIYV-PTNETTFT 605
                 445689***********77777334445567********6.12222333 PP

  == domain 2  score: 190.1 bits;  conditional E-value: 5.9e-60
     DOCK-C2   1 pgdvrNdlYvtlksgefsskgskssa...............kniqvtvevrdsdgerlekaiylgsgeelvsefrsvvlyhnkqptfneeiKialpiel 84 
                 pgdvrNdlY++l+sg+fs ++s++++                n+qvt+evrd+dg++++++++  sge+ vs+f+s+v+++++qp+fne +Ki+lp++ 
  CDO72772.1 661 PGDVRNDLYIKLWSGDFSVSQSTTTRrnvanfargqvgsvtGNVQVTMEVRDQDGRTVDRVMSMCSGEPEVSQFHSMVFQRTTQPHFNELVKIKLPLQG 759
                 89***************655545444889999999999999**********************99********************************** PP

     DOCK-C2  85 tekhHLlFtfrhvsceekkkekdkeeeekpfgyaflpLlkedgraflkdgehelpvyk....kelppsgYlslpssr...tssseeqkgpsekwldn.s 175
                  +++HL+Ftfr++s++e+++ ++++ +e+pf++aflpL++ dgrafl+dg+h+l++y+    ++  p+ Yls +++    +++++    p+  ++ +  
  CDO72772.1 760 AQQWHLFFTFRQRSSRERSSGRNSDASERPFAFAFLPLFP-DGRAFLEDGSHTLVLYRadrlSQIGPDMYLSSTPWLpanQRADQVYVPPELFKVAPpL 857
                 *****************9997777788************9.8***************76665456778***988777887444455555556666666* PP

     DOCK-C2 176 kdtfkvrtklcSTiltqde 194
                 +d++ vr++lcST++tq++
  CDO72772.1 858 RDSLVVRSSLCSTKFTQNS 876
                 ******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.53
# Mc/sec: 12233.05
//
Query:       CDO72773.1  [L=542]
Description: hypothetical protein BN946_scf184994.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.028   14.2   0.2    1.6  1  M_domain    M domain of GW182
      0.055   12.8   5.4      0.098   12.0   5.4    1.3  1  DUF4763     Domain of unknown function (DUF4763)
      0.081   13.5   5.7        0.9   10.2   0.7    2.9  2  SlyX        SlyX
        0.4    8.6   1.1       0.58    8.0   1.1    1.1  1  V_ATPase_I  V-type ATPase 116kDa subunit family
       0.56   10.0   5.7        2.2    8.1   0.1    2.5  2  SKA2        Spindle and kinetochore-associated protein 2
        0.9    8.1   3.0        1.6    7.3   3.0    1.3  1  FapA        Flagellar Assembly Protein A
       0.95    9.5   7.0          2    8.5   7.0    1.5  1  FlxA        FlxA-like protein
        3.6    7.9   6.5        7.9    6.8   6.5    1.5  1  OmpH        Outer membrane protein (OmpH-like)
        7.1    6.5   8.0       0.98    9.2   3.3    1.9  2  DivIC       Septum formation initiator


Domain annotation for each model (and alignments):
>> M_domain  M domain of GW182
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.4e-05     0.028     140     212 ..     137     205 ..      91     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
    M_domain 140 tltLLnQLlnaikrLqiaqqsL.arrgvgGnvrqvevqvaInklkqQIqqlQnQiaaqQaiylKQqqqqqqsqq 212
                  + +L  L     +++   ++L ++ ++   + +   + aI++  +QI +lQ+Qi+     ylKQ++ +  +++
  CDO72773.1 137 VVQILQRLEAVRENIHYLSEQLkQQPSTEPAAPPLSPKSAIKNEERQIHDLQSQIQ-----YLKQRKEELAKKK 205
                 455666666666778888888855555556667789999*****************.....****988665544 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.4   4.9e-05     0.098      50     123 ..     136     205 ..     121     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
     DUF4763  50 dLdeiydelekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeileLqrnnhkLrqqlaelqqhl 123
                 +  +i + le++++   +l ++L+ +    P+ ++ +     ++++++e+ +i++Lq + + L+q+ +el++++
  CDO72773.1 136 QVVQILQRLEAVRENIHYLSEQLKQQ----PSTEPAAPPLSPKSAIKNEERQIHDLQSQIQYLKQRKEELAKKK 205
                 5568999*****************66....899999999**************************999998765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.4     0.023        46      23      57 ..     134     168 ..     132     173 .. 0.76
   2 ?   10.2   0.7   0.00045       0.9      28      60 ..     179     214 ..     174     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX  23 ndvvaeqqqqidrlqrqlrllaerlkeleessgas 57 
                 +++v++  q++++ ++ + +l e+lk+  ++++a+
  CDO72773.1 134 SEQVVQILQRLEAVRENIHYLSEQLKQQPSTEPAA 168
                 57888888999999999999999997766665543 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00045
                 HHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX...X CS
        SlyX  28 eqqqqidrlqrqlrllaerlkeleessgasea...e 60 
                 + ++qi  lq q+++l++r +el++++++++    +
  CDO72773.1 179 NEERQIHDLQSQIQYLKQRKEELAKKKARAPLktkR 214
                 6789*****************999998765544444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.1   0.00029      0.58      25      99 ..     137     205 ..     126     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00029
  V_ATPase_I  25 fvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkel 99 
                  v+ ++r++ + +++++l+e+++++ +++  +         + ++ +++ e+++++l+++++ l++ +e+l k++
  CDO72773.1 137 VVQILQRLEAVRENIHYLSEQLKQQPSTEPAAP------PLSPKSAIKNEERQIHDLQSQIQYLKQRKEELAKKK 205
                 577799****************99554444433......344444455555555555555555555555555544 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0011       2.2      33      63 ..     130     160 ..     114     164 .. 0.82
   2 ?    3.1   1.6     0.039        78      46      69 ..     183     206 ..     174     215 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
        SKA2  33 ypdnaeNpvkLlerlkkvkeelqaLkeqcee 63 
                 +p+  e +v++l+rl++v+e +  L+eq+++
  CDO72773.1 130 MPRASEQVVQILQRLEAVRENIHYLSEQLKQ 160
                 45555899********************986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.039
        SKA2  46 rlkkvkeelqaLkeqceellaekk 69 
                 ++ ++++++q Lk++ eel+++k 
  CDO72773.1 183 QIHDLQSQIQYLKQRKEELAKKKA 206
                 455556666666666666655554 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.0   0.00079       1.6     333     410 ..     131     207 ..     122     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00079
        FapA 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeles 410
                 p + e++ ++ ++le+++e+++ l +++k+ p+  ++ + +   k+ +k+ +++   l+++++ l+++++el ++ ++
  CDO72773.1 131 PRASEQVVQILQRLEAVRENIHYLSEQLKQQPS-TEPAAPPLSPKSAIKNEERQIHDLQSQIQYLKQRKEELAKKKAR 207
                 667888999***********************9.77787788888899999999999*************99988765 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.0     0.001         2      17      81 ..     142     207 ..     132     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
        FlxA  17 sqiasLqkQiknlqkqLkelses.deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqq 81 
                 +++++ ++ i  l++qLk+  ++  + ++   k  ++  + QI +lq+QI+ l+q ++e a++k+ 
  CDO72773.1 142 QRLEAVRENIHYLSEQLKQQPSTePAAPPLSPKSAIKNEERQIHDLQSQIQYLKQRKEELAKKKAR 207
                 66778888899999999988888544444445577777899**********999988887777654 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.5    0.0039       7.9      30      89 ..     139     207 ..     114     215 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHHHHHHHHHHHHHTTTS...........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  30 klqaeleakekelqklqeelqkkakkl.e.........keekeqelqkkeqelqqkqqqkaqelqkkqqe 89 
                 ++ + lea +++++ l e+l+++ +++ +          +++e+++ +++ ++q  ++q+++el+kk++ 
  CDO72773.1 139 QILQRLEAVRENIHYLSEQLKQQPSTEpAapplspksaIKNEERQIHDLQSQIQY-LKQRKEELAKKKAR 207
                 566778888999999999998777775559999999999999999**********.778889**999953 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.1   2.2e+03      24      48 ..     135     159 ..     125     164 .. 0.70
   2 ?    9.2   3.3   0.00049      0.98      17      46 ..     175     204 ..     171     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHHC CS
       DivIC  24 qeiaalqaelaklkaeneeLeaevk 48 
                 ++++++ + l+++++ +  L +++k
  CDO72773.1 135 EQVVQILQRLEAVRENIHYLSEQLK 159
                 6777777777777777777776665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00049
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLeae 46 
                 +a+k  +++i++lq +++ lk+++eeL+++
  CDO72773.1 175 SAIKNEERQIHDLQSQIQYLKQRKEELAKK 204
                 6788889********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 3351.30
//
Query:       CDO72774.1  [L=422]
Description: hypothetical protein BN946_scf184994.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-27   94.9   0.0    1.3e-26   93.0   0.0    1.7  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0     7e-31   1.3e-26      18     278 ..     109     395 ..      92     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 7e-31
                 SB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTT....SSEEEEE---SSHHHHHHHHHCCCCCT-SEEEEE--.-SS... CS
       DHDPS  18 kldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakg....ripviagvGsnstseaiklakkaeeaGadgvlavtP.YYn... 108
                  ld e+  + +    ++gv   + aG+ GE++ l  +e++ l++ a+ a ++     +p+iag+G+ st+e ++l k+a++aGad ++++   YY    
  CDO72774.1 109 DLDIESFTTHVVRVAKAGVGP-LLAGSMGEAHHLTRAERVTLIQAARRALNDaglrDVPIIAGTGAGSTRETVELCKEAAQAGADLAIVIASgYYAgai 206
                 466666666665555666644.469**********************9999844446****************************77777651554222 PP

                 ---HHHHHHHHHHHHHCHSS-EEEEE-HHHH.SHHHHHHHHHHHHT.STTEEEEEE-SS-CTHHHHHHCCCST........T......SEEEES-GGGH CS
       DHDPS 109 kpsqeglyqhfkaiieatdlpvilYnvpsrt.gadlspetvkrLae.lenivgvKeavgdleevikikkevgk........d......lviysGddell 191
                   +++ l+ ++ ++ e    pvi+Yn p+ + g dl  + +++La  ++n++gvK + g++ ++++i ++v++        +      ++++ G+ + l
  CDO72774.1 207 AGNKKALKAFWAEVSENSPIPVIIYNYPGASgGIDLDSDLITELAIeCPNLAGVKLTCGNVGKLTRICATVSDpsfaslypRlnpnapFLVLGGFIDFL 305
                 3456779999999**9999*********987369**********977**************9999998888653222222213333447999******* PP

                 HHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHHH...HHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHH CS
       DHDPS 192 lsalslGadGvisvtsniagermrqlikalkeGdlaea.aelnekllpli...kilfaepnvilvktalellGlvveatlrkPltpleeee 278
                 l+   + a+G+i+  +n+a+  ++ l+++ ++  ++       ++l+ ++   +  +a+  +++ k+ le l    ++  rkPl p+e e+
  CDO72774.1 306 LPSTYVNAHGAITGLANVAPYTIQRLYQLSEATRTNPSlLPEAQRLQGIVaraDFTIAKASISGTKALLEKLYGYGGN-PRKPLPPIEPEA 395
                 *****************************9998877663444566666651113456668888999999877666666.799999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2955.34
//
Query:       CDO72775.1  [L=241]
Description: hypothetical protein BN946_scf184994.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-30  103.7   0.0    9.4e-30  103.1   0.0    1.2  1  DSPc      Dual specificity phosphatase, catalytic domain


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   5.2e-34   9.4e-30       1     132 [.      75     204 ..      75     205 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 5.2e-34
                 EEEEECCHHC.HHHHHHHTCSEEEEESSSSSECECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHHHH CS
        DSPc   1 lylgskstas.lallsklgitlvinvtkevpnanalkkseieklripvedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYlmkt 98 
                 l+l   +ta+ + +++ lgit+v  + ++  +   +  +  ++l++pv+d++et+i +y+++av  i++a  +g++vl HC  G+sRSa+++iaYl+  
  CDO72775.1  75 LFLSDMYTATsPVVIQRLGITHVASIVRKPAH---RYPKPVRHLCVPVDDKDETNILDYFDAAVGWIHAALAEGGRVLLHCVWGMSRSASVAIAYLIAA 170
                 577777788879999*********99955554...66899*********************************************************** PP

                 HTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHHH CS
        DSPc  99 knlslneayeflkerrpaispnagfirqLleyek 132
                 +++sl+ea+++ + rr+ ++pn gf++qL  yek
  CDO72775.1 171 RRMSLDEALQLARARRKVVRPNQGFMGQLKVYEK 204
                 ******************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1700.94
//
Query:       CDO72776.1  [L=247]
Description: hypothetical protein BN946_scf184994.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-43  146.4   9.7    8.5e-43  146.4   9.7    1.6  2  Form_Nir_trans  Formate/nitrite transporter
  ------ inclusion threshold ------
      0.074   13.4   0.1       0.18   12.1   0.1    1.6  1  HutP            HutP
        0.2   11.6   1.4       0.43   10.6   1.4    1.5  1  TM_helix        Conserved TM helix
       0.69   10.3   3.2        1.6    9.1   3.2    1.6  1  CPBP            CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.24   1.1e+03       2      25 ..      15      38 ..      14      41 .. 0.88
   2 !  146.4   9.7   1.9e-46   8.5e-43     105     235 ..      53     192 ..      51     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.24
                    HHHHHHHHHCHHHHHHHHHHHHHH CS
  Form_Nir_trans  2 ivekvvaagvkkaklsldklfllg 25
                    ++ +++++gv+k ++++d +f+++
      CDO72776.1 15 VAVAMIHHGVAKHRTRADVMFFKA 38
                    6789999********999999986 PP

  == domain 2  score: 146.4 bits;  conditional E-value: 1.9e-46
                     HHHHHHHHHHHHHHHHHHHCTGG.....HHHHHHHHHCCC.SS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHCT---HH CS
  Form_Nir_trans 105 vllgNliGsllvalllvvlsgll.....aekllsiaeakl.slsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafvasgfeHsv 193
                     v++gNl+Gsl++a +l+ ++g++     +e+++++a +k+ +  ++e+flrGi+CNwlVc+a+w+a  a+++i+k++a+++pi++fv++g++H+v
      CDO72776.1  53 VTFGNLCGSLFFATVLTKYTGIIstapyNEYAVTFALHKAaQPAWHEIFLRGIGCNWLVCVAIWQAAGARETISKVVALWIPIMIFVTCGYDHVV 147
                     789*******************566777************4556*************************************************** PP

                     HHHHHHHHHHHH....SHHHHHHHCHHHHHHHHHHHHHCCHHHHHH CS
  Form_Nir_trans 194 anmfliplglll....tvadfilknlipvtlGNivGGallvgllyl 235
                     anmf +plg+l+    tva++i k+li++ lGNivG+ llv+l+ l
      CDO72776.1 148 ANMFSVPLGILFgadlTVAQYIRKSLIAAYLGNIVGA-LLVALPAL 192
                     **********999999*******************65.55666544 PP

>> HutP  HutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     4e-05      0.18      53     127 ..      67     157 ..      62     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
                 HHHHHTTSS-SSSHHHH....HHHHHHHHHHHHHHTTSHHSGEEEEEEEEE...........G--EEEEEEEEEEESSST.SEEEEEEEEE CS
        HutP  53 vaAkregvikeehreeh....avahAvleAlsqvtrkavglnvglkigivr...........egehiaVaifgkigllhl.teheavGlGi 127
                 v  k +g+i++ + +e     a+ +A++ A ++++ + +g+n  + ++i +              +i + if++ g+ h+ ++   v lGi
  CDO72776.1  67 VLTKYTGIISTAPYNEYavtfALHKAAQPAWHEIFLRGIGCNWLVCVAIWQaagaretiskvVALWIPIMIFVTCGYDHVvANMFSVPLGI 157
                 556777888776555540111566777778899*********8888898888899999999999***************988888888886 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.4   9.5e-05      0.43       9      25 ..     173     189 ..     171     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.5e-05
                 HHHTTHSHHHHHHHHHH CS
    TM_helix   9 ellsflPnLvgAilILl 25 
                  ++++l+n+vgA+l++l
  CDO72776.1 173 LIAAYLGNIVGALLVAL 189
                 689************97 PP

>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.2   0.00036       1.6       6      84 ..      85     178 ..      80     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHHHHHHTTCHHHHHHHH..S-..........HHHHHHHHHHHHHCSGGG...HHH.HHHHHHHHHHHHHHHHHTT-HHHHHH CS
        CPBP   6 lvfllalllapllEEllfRglllqllqer.gss..........tlailissilFglaHlpn...gps.vllaalaGlvlgylylktgsllaail 84 
                 + f l     p + E++ Rg+ +++l     ++          ++a++i  ++F+   + +   +++ v l +l+G  l+++ +  +sl+aa l
  CDO72776.1  85 VTFALHKAAQPAWHEIFLRGIGCNWLVCVaIWQaagaretiskVVALWIPIMIFVTCGYDHvvaNMFsVPLGILFGADLTVAQYIRKSLIAAYL 178
                 5666666788999***********97777766667777888889*********98886665333555577777777777777777777888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1801.27
//
Query:       CDO72777.1  [L=735]
Description: hypothetical protein BN946_scf184994.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  106.1   0.0      3e-30  104.9   0.0    1.6  1  MyTH4     MyTH4 domain
    4.2e-27   94.8   0.0      7e-27   94.1   0.0    1.3  1  RhoGAP    RhoGAP domain


Domain annotation for each model (and alignments):
>> MyTH4  MyTH4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   3.3e-34     3e-30       7     106 ..     449     549 ..     447     551 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 3.3e-34
                 HHHHHHH-GGGHHHHHHHHHHCTTT-S-HHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCTTT.HHHHHHHHHHHHHCHCHHG--SS---HHH CS
       MyTH4   7 ilqkglskeeLrdEiycqlikQttenpnkesaergwqLlalclslfpPskkllkylkkhlkrnadskee.tekyaafclrrlertlkngaReakPsreE 104
                 +l++gls+ eLrdEiycq+ikQ++ np+kes  +gwqLl+++l +fpPsk+++ yl++++++ ++++e   + +a++clrrl  ++k+g+R ++P+ +E
  CDO72777.1 449 LLSEGLSHGELRDEIYCQVIKQLNGNPSKESTFKGWQLLCVLLVTFPPSKDFEAYLRSYIQQATHQQEGrIDIMAKYCLRRLAYISKKGPRGKPPTVAE 547
                 6899********************************************************9988776554449************************** PP

                 HH CS
       MyTH4 105 ie 106
                 ie
  CDO72777.1 548 IE 549
                 *8 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   7.8e-31     7e-27      14     149 ..     596     725 ..     582     727 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 7.8e-31
                 HTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHH CS
      RhoGAP  14 rgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlealkellekLPkenrdtLr 112
                  g ++egi+Rv+g+ + v  l+ ++d+g+++      +d+h++as++K++Lrel +pL+++ely+++i +  ++      e + +++++LP +nr++  
  CDO72777.1 596 GGTKSEGIFRVPGDGDLVSDLKLRIDRGYYS--LEGVDDPHVLASVMKLWLRELCDPLVPDELYNDCITC-ANN-----PEDCIQIVRRLPTINRRVVL 686
                 5799**************************9..89*********************************55.333.....345669************** PP

                 HHHHHHHHHHHTHHH..H---HHHHHHHHHHHHHT-TSS CS
      RhoGAP 113 yLlehLkrvaenske..nkMtaknLaivfaPtLlrpkse 149
                 +++++L+ + e + +  +kMta nLa+v+aP+Llr++se
  CDO72777.1 687 FVISFLQLFLEEKIQnvTKMTAPNLALVMAPNLLRCNSE 725
                 *********996655348*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4853.98
//
Query:       CDO72778.1  [L=414]
Description: hypothetical protein BN946_scf184994.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-16   59.0   0.1      5e-16   58.6   0.1    1.2  1  UDPGT     UDP-glucoronosyl and UDP-glucosyl transferase


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.1   2.8e-20     5e-16     219     366 ..     130     291 ..     104     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 2.8e-20
       UDPGT 219 laellskaevwllrsyfdlefPrpllpnvefigglnckpakplpkeleef....vqssGehGvvvfSlGsmvsei.peekanaiAsaLakipqkvlWr. 311
                  +e ++++++wl  +  ++    pllp +   +  n k++   + e+ +f    +q+sGe+ + ++S+Gs+  ++ + ek+ a  + + +++ + l + 
  CDO72778.1 130 EPEAVEAVSAWLGETGRPVYVCGPLLP-AGSKAVSNEKKQSRQGAEITAFldqtLQTSGERSLLYISFGSVFWPLrTPEKLWAFLDVVMELGIPSLLSh 227
                 457788888888888888888888888.66666666777777777777763322699**************9985367889999999999999988873 PP

       UDPGT 312 ...fdgkkPstLaknt......llvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvgl 366
                    f g  P+ + k         l  W Pq  +L HP t+ FvtH G n++ E+is GvP+ +l
  CDO72778.1 228 aspFAGDLPEEIVKKVkmygkgFLSVWTPQQSVLQHPATGWFVTHCGHNSIIESISAGVPICVL 291
                 33466788888888876777778889**********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3042.11
//
Query:       CDO72779.1  [L=514]
Description: hypothetical protein BN946_scf184994.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.2e-103  346.1   0.0   2.6e-103  345.9   0.0    1.1  1  G-alpha       G-protein alpha subunit
    5.5e-13   48.7   0.1      3e-09   36.6   0.0    2.5  2  Arf           ADP-ribosylation factor family
     0.0031   17.7   0.0        3.1    8.0   0.0    2.4  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.005   16.3   0.0     0.0086   15.5   0.0    1.3  1  TniB          Bacterial TniB protein
  ------ inclusion threshold ------
      0.038   13.4   0.0      0.069   12.5   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.07   12.9   0.0       0.13   12.0   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
       0.15   11.8   0.0       0.44   10.2   0.0    1.7  2  AAA_24        AAA domain
       0.21   11.1   0.0        1.2    8.6   0.0    2.0  2  GTP_EFTU      Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.9   0.0  1.2e-106  2.6e-103       2     352 ..      38     501 ..      37     503 .. 0.89

  Alignments for each domain:
  == domain 1  score: 345.9 bits;  conditional E-value: 1.2e-106
                 XXXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS--.--HHHHHCCHHHHHHHHHHHHHHHHHHHHHT..T............... CS
     G-alpha   2 rtssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkg.fseeelatwraviqlnivrsiktilealesl..eselsesf........ 89 
                 r+s++id++++ae++a kk++++kllllGqseSGKsT++k+++l y    f  e +a+wravi+ln+vrs+++il+ l ++  e+++++++        
  CDO72779.1  38 RISEQIDEQIRAEKQAMKKRKPMKLLLLGQSESGKSTTVKNFQLAYAYDaFLAE-RAAWRAVIHLNLVRSVNSILDVLYRElpEKTIISDPgarpytpg 135
                 899*******************************************66636655.888**********************6445666666699999999 PP

                 ..............................HHHC-SS-SCCCS-HCHHHH................................................. CS
     G-alpha  90 ..............................elqelkerldplkkveasliaklssateee....................................... 119
                                               ++++l  rl pl+ v+ +l ++l  a++ee                                       
  CDO72779.1 136 ldvgpldadideeddereylsdflesplndSHRALMLRLGPLRMVQRDLERFLGAASSEEvhsgsadvapwntggwrprefavttrsgwktalnrmrqp 234
                 9999999999999999999**************************************999***********9999988777777777766666666666 PP

                 ....................HHCCHHC-HCHHH...............HHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHC CS
     G-alpha 120 ....................qeiefnpraevge...............dikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilk 183
                                     +           +               d+ aLw+d +++e++++r +++ e++ ++Fl+d+ r+++  ++pt+dD+++
  CDO72779.1 235 aghqpslarssssarhsektD-----------DaeveaaveilaacaeDMWALWTDATVREVLDKR-SMRPEEGPGFFLNDVMRVAARGFEPTEDDVVR 321
                 666666655555555444442...........0444444444445555******************.9******************************* PP

                 S-----SEEEEEEEC....T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE- CS
     G-alpha 184 arlktvGisetkfev....dsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnK 278
                 arl+t+G++e+++ v    + + e+ i+dvgG+rs r++W p+fdd++aiiFl+++s+fd+ l+ed++vnrl++sl l+k++c+ kll+++++iLflnK
  CDO72779.1 322 ARLRTMGVQEHRILVekgtEAGCEWIIYDVGGARSLRHAWYPYFDDINAIIFLAPISCFDERLAEDKRVNRLQDSLLLWKAVCSTKLLAKVQLILFLNK 420
                 *************99777755777*************************************************************************** PP

                 HHHHHHHCCCS.-GGGCCTT--H.CCHHHHHHHH......HHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHH CS
     G-alpha 279 lDileeKlkkg.klskyfpsyegrkndlesvlky......lrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrd 352
                 +D+le+Kl +g ++ +y+p y++++ndle+v+++      +   F++i  ++s+  r +y+++t+a+dtk+++ ++++vr+
  CDO72779.1 421 CDLLEKKLARGvRVVDYIPTYGSKPNDLEHVSRCtssfplFTCDFKDISARHSPIARMFYSFLTTAVDTKATRITVATVRE 501
                 *******************************999666666669**********999***********************98 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00025      0.57       8      36 ..      53      81 ..      47      87 .. 0.85
   2 !   36.6   0.0   1.3e-12     3e-09      56     131 ..     342     427 ..     316     449 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
                GTT.TTEEEEEEEESTTSSHHHHHHHHHH CS
         Arf  8 lklkkkelrilllGLDnaGKtTilkklkl 36
                 ++k+k +++lllG  ++GK+T +k+++l
  CDO72779.1 53 AMKKRKPMKLLLLGQSESGKSTTVKNFQL 81
                4455899*****************99986 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 1.3e-12
                 TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEE..EETT-CT.....THHHHHHHH...HHHCTSGCCTTSEEEEEEE-TTSTTSS CS
         Arf  56 knlkftvwDvGGqeklRplWknYfektdavifv..vDsadre.....RleeakeeL...kalleeeelkevallvlaNKqDlpeal 131
                  + +  ++DvGG ++lR+ W  Yf++++a+if+  + + d++     R++  ++ L   ka+ +++ l++v+l+++ NK Dl e  
  CDO72779.1 342 AGCEWIIYDVGGARSLRHAWYPYFDDINAIIFLapISCFDERlaedkRVNRLQDSLllwKAVCSTKLLAKVQLILFLNKCDLLEKK 427
                 5677889*************************9444444432222223333333332337888999999************98765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0014       3.1       1      20 [.      61      80 ..      61      93 .. 0.91
   2 !    7.3   0.0    0.0023       5.2      24     119 ..     312     422 ..     304     423 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0014
                EEEEESSTTSSHHHHHHCHC CS
         Roc  1 KvvlvGdsgvGKtsllkrfv 20
                K++l+G+s++GK++ +k+f+
  CDO72779.1 61 KLLLLGQSESGKSTTVKNFQ 80
                89**************9986 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0023
                 CC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEE.....EE.....GHHHHCHHH....HHHHHHHH.CS CS
         Roc  24 fsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailv.....yd.....srssenlke....Wlkelkkv.ag 107
                 f+++e+  + + + t  v++ + + ++ +   ++  i+D++G    r     y+ + +++i++     +d     +++ ++l++    W   ++++   
  CDO72779.1 312 FEPTEDDVVRARLRTMGVQEHRILVEKGTEAGCEWIIYDVGGARSLRHAWYPYFDDINAIIFLapiscFDerlaeDKRVNRLQDslllWKAVCSTKlLA 410
                 555555555555555555544444444455669999*************99999999999975222225644332112233332222277666554245 PP

                 SS-EEEEEE-TT CS
         Roc 108 kspvilvgnkiD 119
                 k ++il  nk+D
  CDO72779.1 411 KVQLILFLNKCD 422
                 667888888888 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.8e-06    0.0086      16      62 ..      40      86 ..      23     121 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.8e-06
        TniB 16 akeilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppe 62
                +++i e++++  ++ k+ ++ +lll+G+s+ GK++ v++F+  +  +
  CDO72779.1 40 SEQIDEQIRAEKQAMKKRKPMKLLLLGQSESGKSTTVKNFQLAYAYD 86
                3455555555566677888899******************9766544 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05     0.069      11      65 ..      27      85 ..      21      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                  HHT---TTEEEEEEETTS-EEEEEGGGS-.....SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE 11 frtessqlpvalgkeisgnplvldlkkma....shllvaGatgsGKStalntLilSlat 65
                  + +e+ ++   +  e++++ + ++ + m       ll++G ++sGKSt+++++ l+ a+
    CDO72779.1 27 WAREQREAQARRISEQIDEQIRAEKQAMKkrkpMKLLLLGQSESGKSTTVKNFQLAYAY 85
                  55566666666667777777777777777777789****************98776665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.8e-05      0.13      23      39 ..      59      76 ..      46      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
      AAA_29 23 g.atlltGpsGsGKSTll 39
                    ll G+s+sGKST +
  CDO72779.1 59 PmKLLLLGQSESGKSTTV 76
                24689***********76 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.5   3.3e+03     144     171 ..      23      50 ..      18      56 .. 0.79
   2 ?   10.2   0.0    0.0002      0.44       2      22 ..      59      79 ..      58      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.5
      AAA_24 144 kytrlepklgkktanelkeevDlvlran 171
                 + +r++ ++++  a+ + e+ D+ +ra+
  CDO72779.1  23 PEQRWAREQREAQARRISEQIDEQIRAE 50 
                 4469999999999999999999988876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0002
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                ++k+l+ G+s++GK+t++k++
  CDO72779.1 59 PMKLLLLGQSESGKSTTVKNF 79
                689****************99 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.35   7.9e+02       6      22 ..      62      78 ..      57      95 .. 0.83
   2 ?    8.6   0.0   0.00055       1.2     120     143 ..     409     432 ..     401     459 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.35
                EEEEESTTSSHHHHHHH CS
    GTP_EFTU  6 igiighvDhGKtTLtdr 22
                + ++g  ++GK+T++ +
  CDO72779.1 62 LLLLGQSESGKSTTVKN 78
                67889999*****9876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00055
                 HTTTEEEEEEESCGSTHHHHHHHH CS
    GTP_EFTU 120 kegvpiivfiNKmDrlkaelkeiv 143
                   +v++i+f+NK+D l+++l + v
  CDO72779.1 409 LAKVQLILFLNKCDLLEKKLARGV 432
                 56899***********99998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3717.14
//
Query:       CDO72780.1  [L=695]
Description: hypothetical protein BN946_scf184994.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4537.91
//
Query:       CDO72781.1  [L=309]
Description: hypothetical protein BN946_scf184994.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-16   60.1   0.1    7.6e-16   57.8   0.0    2.2  2  DUF1932        Domain of unknown function (DUF1932)
    1.2e-07   32.1   0.0    2.4e-07   31.1   0.0    1.5  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    7.4e-06   25.6   0.0    1.5e-05   24.7   0.0    1.4  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.026   15.1   0.0    1.7  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.018   14.4   0.0      0.033   13.5   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.024   14.3   0.1      0.039   13.6   0.1    1.4  1  ApbA           Ketopantoate reductase PanE/ApbA
      0.051   13.5   0.7      0.051   13.5   0.7    1.7  2  Rossmann-like  Rossmann-like domain


Domain annotation for each model (and alignments):
>> DUF1932  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   2.6e+03      54      68 ..     113     127 ..      95     128 .. 0.73
   2 !   57.8   0.0     3e-19   7.6e-16       2      69 ..     211     280 ..     210     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
                 TS--HHHHHHHHHHH CS
     DUF1932  54 glepqmfraiaevyr 68 
                  ++p+ +r ia v++
  CDO72781.1 113 AVSPETARKIAGVFE 127
                 388999999999986 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 3e-19
                 HHTT-HHHHHHHHHHHSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT..S--HHHHHHHHHHHH CS
     DUF1932   2 hrlGVldelldeleeslpallaraergltgmppkAyRwveEMeeiaetlaeeg..lepqmfraiaevyrl 69 
                 ++   +++ll+el+ s+p +l+r+++ ++gm pkAyRwv EMeei+ +++     +e+ + +++a++y++
  CDO72781.1 211 SSPATAQALLHELADSQPVFLERMTKSIPGMLPKAYRWVGEMEEISSFVRRGLgeGEAHIHEGFAHLYDR 280
                 5666799******************************************975546678899999999987 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   9.3e-11   2.4e-07       1     118 [.      14     140 ..      14     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 9.3e-11
                    EEEEE--SHHHHHHHHHHHHTT-EEEE.E-.SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.........HCCC--TT-E CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvav.yn.rtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.........llealkkgdi 85 
                    +i++i  G MG+    +l+k+g+ v    + r++++ve++ a+g+   + ++e++++++ v+ +++ ++a     +             ++k+g +
     CDO72781.1  14 TIAVIAPGAMGAAVGHRLAKSGCAVLTnLDgRSPASVERARAAGM-HDTPLSEIAQRAQWVLSILPPSSALAF-AQAfrdaysasaAGGSAKEGLT 107
                    5899999*****************976245799999999999997.445667899999999999998776532.22212355445444566***** PP

                    EEE-S---HHHHHHHHHHHHHTT-EEEEEEEES CS
  NAD_binding_2  86 lidgstsspedtrelakelkekglkfldaPVSG 118
                    ++d+  +spe++r++a   + + ++f+da++ G
     CDO72781.1 108 FVDCNAVSPETARKIAGVFEGSAIRFIDAGIVG 140
                    *******************************98 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.7e-09   1.5e-05       6      70 ..      14      79 ..      10      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.7e-09
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-H.HHHHHHHTT-EEEEHHHHHHT-SEEEE-S-H CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsk.svkkAkeegfevltvaeavkkadvvmiliPD 70
                +iavi  G+ G a ++ l  sg+ v   l   s  sv++A+++g++ + ++e++++a++v+ ++P 
  CDO72781.1 14 TIAVIAPGAMGAAVGHRLAKSGCAVLTNLDGRSPaSVERARAAGMHDTPLSEIAQRAQWVLSILPP 79
                8****************************998855*************************999995 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     1e-05     0.026       1      81 [.      14      89 ..      14     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEE.EEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheiv.vansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlsel 81
                   +i++i+ G mg+a+ ++l+++g     ++     r+p ++e ++++    +  ++ +e a++a +v+  ++p+ + +++++ 
     CDO72781.1 14 TIAVIAPGAMGAAVGHRLAKSG---CAVLtNLDGRSPASVERARAAG---MHDTPLSEIAQRAQWVLSILPPSSALAFAQAF 89
                   59********************...4444022358888777776664...455569***********999999998888777 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05     0.033      35     101 ..      11      79 ..       2      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHHH-SEEEE-S-- CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleellaesDivslhlpl 101
                   s  t+++i  G++G av +rl++ g+ v+     +++ +  ++++ g++ + l e+ +++++v   lp 
    CDO72781.1  11 STPTIAVIAPGAMGAAVGHRLAKSGCAVLTNLDGRSPASveRARAAGMHDTPLSEIAQRAQWVLSILPP 79 
                   5679*************************9866666555558888899999***********9998885 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.5e-05     0.039       1      37 [.      15      54 ..      15      74 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
                EEEES-SHHHHHHHHHHHHHTHCEE..EE-SCH.HHHHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvt..lilrsr.rlealk 37
                ia++ +Ga+G  ++++Lak g+ v   l +rs+  +e+ +
  CDO72781.1 15 IAVIAPGAMGAAVGHRLAKSGCAVLtnLDGRSPaSVERAR 54
                789999*****************75114445555555555 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7     2e-05     0.051       4      77 ..       6      78 ..       3      99 .. 0.79
   2 ?   -2.7   0.1       1.9   4.9e+03      21      55 ..     187     221 ..     183     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
  Rossmann-like  4 pdersarlsvGiisaGrvGtalgaaleraghvv.vgisaisaasreraerr.lPdvpvlevedvaaraellllavP 77
                   p++ ++  ++ +i+ G +G+a+g+ l+++g +v + +   s as era++  + d+p   + ++a+ra+ +l  +P
     CDO72781.1  6 PTQVQSTPTIAVIAPGAMGAAVGHRLAKSGCAVlTNLDGRSPASVERARAAgMHDTP---LSEIAQRAQWVLSILP 78
                   66667777899*******************987256899********9864255555...5566888888776665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
  Rossmann-like  21 vGtalgaaleraghvvvgisaisaasreraerrlP 55 
                    +G a +  +  a h++    a  a+s   a++ l 
     CDO72781.1 187 IGDASALKMSYALHMIDMGDAANASSPATAQALLH 221
                    56666666677778887777777777777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2178.39
//
Query:       CDO72782.1  [L=292]
Description: hypothetical protein BN946_scf184994.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-70  237.2   0.0    3.3e-70  236.3   0.0    1.4  1  ComA        (2R)-phospho-3-sulfolactate synthase (ComA)
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.037   13.5   0.0    1.3  1  PEP_mutase  Phosphoenolpyruvate phosphomutase
        0.2   12.2   0.0       0.34   11.5   0.0    1.3  1  Pox_A21     Poxvirus A21 Protein


Domain annotation for each model (and alignments):
>> ComA  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.0   5.5e-74   3.3e-70      10     242 ..       7     259 ..       4     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 5.5e-74
                 SS-EEEEESS.....--HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT.....-HHHHHHHHHHCT-SE CS
        ComA  10 tGlTeviDkG.....lglreledlletageyiDglKlgggtsallpeeilrekielahehgvyvstGgtlfEaalaqg.....kvdeyleeckelgfdv 98 
                 + lTe+  +G     +++++l++ll+ +gey+Dg+K++gg ++l+pee lr++i++ah+hg+yvstGg ++E++l+ +      +++yl++ck++gfdv
  CDO72782.1   7 KELTEI--RGpyyapVTQTYLDELLKDWGEYVDGVKFAGGAFTLMPEERLRALINTAHKHGCYVSTGG-FIERVLSASggnksVISRYLTTCKNMGFDV 102
                 579***..************************************************************.******9999999999************** PP

                 EEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSH..........HHHTT..--CCHHHHHHHHHHHHTECEEEE--TTT--SSTTB-TTS-B-HH CS
        ComA  99 iEvsdgtlelpeeeklrliekakkeglkvlpevgkkdg..........elese..sdveklieeakrdleaGaekviiEaresGitegvydekgevrtd 185
                  E+s+g+l++p++++++lie  +++glk +pevg++ g          e+  +   d+++li++ak++l+aGa++++iE++  Gite+v    +++rtd
  CDO72782.1 103 LEISSGFLSIPTDDWASLIEFTAAHGLKPKPEVGIQWGaggdasveelEN--AgtRDPKWLIDRAKAFLDAGAYMIMIESE--GITENV----KNWRTD 193
                 **************************************999999984444..456**************************..******....****** PP

                 HHHHHHTTS-GGGEE..........EE--SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SG CS
        ComA 186 vvekiierlglekli..........fEApekkqqewfikefGpnVnLgnvdpsevlaLealRlglrg 242
                 v+++++++l+ +k++          fEA+++++++++i++ G++ nL ++d+s+v++L +lR+g++g
  CDO72782.1 194 VISAVTSSLPNDKIMyvtlrlssssFEAADPEVFAYHIQNQGARANL-FIDHSQVVQLACLRRGIWG 259
                 **************977777778888*********************.******************9 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.3e-06     0.037     158     191 ..     161     194 ..     145     238 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.3e-06
  PEP_mutase 158 aieRaraYaeAGAdgvfvpglqkdaeiaelvaav 191
                  i+Ra+a+++AGA ++++ +   ++++++  + v
  CDO72782.1 161 LIDRAKAFLDAGAYMIMIESEGITENVKNWRTDV 194
                 599***************9886666555444433 PP

>> Pox_A21  Poxvirus A21 Protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.7e-05      0.34      19      76 ..     195     253 ..     193     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
     Pox_A21  19 vpaileklrlekeafekykklkkkvvCvddrlfsyeftatgikaklavdkkgk.plpCs 76 
                 + a++  l ++k  ++ ++ +++++   d ++f y+++  g +a+l++d+++   l C 
  CDO72782.1 195 ISAVTSSLPNDKIMYVTLRLSSSSFEAADPEVFAYHIQNQGARANLFIDHSQVvQLACL 253
                 67788889999**************************************9876588886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2014.73
//
Query:       CDO72783.1  [L=226]
Description: hypothetical protein BN946_scf184994.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-20   71.0   0.2    2.1e-19   69.6   0.1    1.8  2  GST_N     Glutathione S-transferase, N-terminal domain
    8.9e-16   57.9   0.0    1.6e-15   57.0   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    1.2e-12   48.1   0.0    2.1e-12   47.3   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.4e-12   46.9   0.0      5e-12   46.0   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    2.4e-11   43.7   0.1    4.7e-11   42.8   0.1    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    8.6e-07   28.9   0.0    1.6e-06   28.0   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1   7.1e-23   2.1e-19       2      75 ..       6      82 ..       5      83 .. 0.98
   2 ?   -2.2   0.0       1.8   5.4e+03      36      57 ..      94     117 ..      87     118 .. 0.67

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 7.1e-23
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET...TEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn...gkkltESraIleYia 75
                ++tlys++  p+ +++  +l+++g+ ye++ ldf  ge+kspe++k np+g++P+L+d+   +++++ES+aIl Y++
  CDO72783.1  6 QFTLYSHVLGPNGWKVAFVLEELGLTYETIYLDFARGEQKSPEHTKYNPNGRIPTLIDHqnyDFVVWESNAILLYLV 82
                68*************************************************************************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
                 TTTCGGCHHHHHHCTT..S-SSEE CS
       GST_N  36 eageekspellklnpl..gkvPaL 57 
                 ++ e+k + l +l++   g+ P++
  CDO72783.1  94 TNEEDKYKLLQWLFFQasGQGPYF 117
                 455555577777777778888887 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   5.5e-19   1.6e-15       6      93 .]     118     209 ..     115     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 5.5e-19
                 HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.....TTTSHHHHHHHHHHHTSH CS
       GST_C   6 sqilllfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.....qekfpnlkawlerimarp 93 
                 +q++++   +ae+++  + +  ++++ +v+s+le +l+kq +lvG+klt+ADi ++++++ ++ + l+ +     q+++p +++w++++++rp
  CDO72783.1 118 GQAIWFMRYHAEHFPS-AIERYQKETQRVYSVLESVLSKQEWLVGNKLTIADISFITWNRSAFLVILKDLpgvdiQKDYPSVYKWHQKLVERP 209
                 5777888888888888.899999*************************************4444433333347789***************99 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0     7e-16   2.1e-12       1      73 [.       9      87 ..       9      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 7e-16
                EES-TTSHHHHHHHHHHHHHT--EEEE---...TTTTHHHHHHH-TT--SSEEETT...S-EEESHHHHHHHHHHHH-G CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevt...pgehdeellaknplgkvPvLedd...gealtdSlaIidyLeelypg 73
                Ly+    p+ ++v+ +L+e+gl +e+  ++   ++++++e  ++np+g++P+L d    + ++++S aI+ yL e+y+ 
  CDO72783.1  9 LYSHVLGPNGWKVAFVLEELGLTYETIYLDfarGEQKSPEHTKYNPNGRIPTLIDHqnyDFVVWESNAILLYLVEKYDK 87
                7888889*******************99987767778****************87645677****************95 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.7e-15     5e-12       3      67 ..      16      81 ..      15      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 1.7e-15
                HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE..EEESHHHHHHHH CS
     GST_N_2  3 PwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgq..vineSseIlryl 67
                P  ++v  +l+++gl+++++ + +   g++ks+e  ++np+g +P+L+d+++   v++eS +Il yl
  CDO72783.1 16 PNGWKVAFVLEELGLTYETIYL-DFARGEQKSPEHTKYNPNGRIPTLIDHQNYdfVVWESNAILLYL 81
                7789**************9888.6679**********************865579***********9 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   1.6e-14   4.7e-11      19      96 ..     132     215 ..     116     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.6e-14
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH........TCCCC-HHHHHHHHHHHTSHHHHHHH CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea........ealkkfpklkalyervearpkikaYl 96 
                   + e ++++ +++++++e vl+  ++++lvg+klT+AD+++ ++      +        +++k++p + ++++++ +rp++k+ +
  CDO72783.1 132 PSAIERYQKETQRVYSVLESVLS--KQEWLVGNKLTIADISFITWNRSAFLVilkdlpgvDIQKDYPSVYKWHQKLVERPAVKKLI 215
                 566677888999***********..999************88885544433355556755666********************865 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   5.4e-10   1.6e-06       3      68 ..     134     203 ..     132     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.4e-10
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHH....HHS----TT-HHHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrlraa....gpgfdireaypnlraWle 68 
                 a+er +++ ++  ++le+ L ++ +l G+++t+aDi+++++   +  +     pg di ++yp + +W++
  CDO72783.1 134 AIERYQKETQRVYSVLESVLSKQEWLVGNKLTIADISFITWNRSAFLVilkdLPGVDIQKDYPSVYKWHQ 203
                 7999***********************************97777755544546688************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1552.70
//
Query:       CDO72784.1  [L=199]
Description: hypothetical protein BN946_scf184994.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-19   68.1   0.1    1.7e-18   66.7   0.0    1.8  2  GST_N     Glutathione S-transferase, N-terminal domain
    6.3e-13   48.9   0.0      1e-12   48.3   0.0    1.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.4e-12   47.7   0.0    2.8e-12   46.8   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    8.3e-11   42.0   0.0    1.6e-10   41.0   0.0    1.5  1  GST_C     Glutathione S-transferase, C-terminal domain
    7.2e-08   32.5   0.0    1.4e-07   31.6   0.0    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    8.6e-06   25.7   0.0    1.7e-05   24.8   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.038   13.8   0.0      0.074   12.9   0.0    1.5  1  GST_C_6   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   6.7e-22   1.7e-18       2      74 ..       6      81 ..       5      83 .. 0.97
   2 ?   -1.9   0.0       1.8   4.5e+03      36      57 ..      94     117 ..      87     118 .. 0.68

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 6.7e-22
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET...TEEEESHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn...gkkltESraIleYi 74
                ++tlys+ + ++ +++  +l+++g+ ye + ldf  ge+k+pe+++ np+g++PaL+d+   +++++ES+aIl Y+
  CDO72784.1  6 QFTLYSNKTGANGWKVAFVLEELGLTYESIYLDFARGEHKAPEYTQYNPNGRIPALIDHrsnDFVIWESNAILLYL 81
                689************************************************************************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
                 TTTCGGCHHHHHHCTT..S-SSEE CS
       GST_N  36 eageekspellklnpl..gkvPaL 57 
                 ++ e+k + l +l++   g+ P++
  CDO72784.1  94 TNEEDKYKLLQWLFFQasGQGPYF 117
                 455555577777777778888887 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0     4e-16     1e-12       1      73 [.       9      87 ..       9      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 4e-16
                EES-TTSHHHHHHHHHHHHHT--EEEE---..TTTT.HHHHHHH-TT--SSEEETT...S-EEESHHHHHHHHHHHH-G CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevt..pgeh.deellaknplgkvPvLedd...gealtdSlaIidyLeelypg 73
                Ly+ ++ ++ ++v+ +L+e+gl +e   ++   geh  +e+ ++np+g++P+L d    + ++++S aI+ yL ++y+ 
  CDO72784.1  9 LYSNKTGANGWKVAFVLEELGLTYESIYLDfaRGEHkAPEYTQYNPNGRIPALIDHrsnDFVIWESNAILLYLIKKYDK 87
                8999999******************877766677777****************76655477****************95 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   1.1e-15   2.8e-12       6      67 ..      19      81 ..      16      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.1e-15
                HHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE..EEESHHHHHHHH CS
     GST_N_2  6 hRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgq..vineSseIlryl 67
                ++v  +l+++gl+++ + + +   g++k +e+ ++np+g +P+L+d+ ++  vi+eS +Il yl
  CDO72784.1 19 WKVAFVLEELGLTYESIYL-DFARGEHKAPEYTQYNPNGRIPALIDHRSNdfVIWESNAILLYL 81
                89*************7666.6679**********************966667*********998 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   6.3e-14   1.6e-10       6      77 ..     118     190 ..     115     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.3e-14
                 HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH.HHHHHTTTTT.TT CS
       GST_C   6 sqilllfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpiln.wlqrlglafg.qe 77 
                 +q++++  +++e+ +  + +  ++++ +vls+le +l+kq +lvG+k+t+ADi ++++ +  ++r+ ++ + +e
  CDO72784.1 118 GQAIWFMRFHPEHLPS-AIERYQKETQRVLSVLESVLSKQEWLVGNKPTIADISFITWHQkLVERPAVKKLyEE 190
                 6788888899965555.99999************************************9977777777666544 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   5.4e-11   1.4e-07      21      86 ..     134     191 ..     117     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 5.4e-11
                 HHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHH CS
     GST_C_3  21 kkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaealkkfpklkalyerv 86 
                 + e ++++ +++l+++e vl+  ++++lvg+k T+AD+++ ++ ++l e       p +k+lye+ 
  CDO72784.1 134 AIERYQKETQRVLSVLESVLS--KQEWLVGNKPTIADISFITWHQKLVER------PAVKKLYEEQ 191
                 5566788999***********..999*********************999......9999999875 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   6.5e-09   1.7e-05       3      43 ..     134     174 ..     132     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 6.5e-09
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapf 43 
                 a+er +++ ++ l++le+ L ++ +l G++pt+aDi+++++
  CDO72784.1 134 AIERYQKETQRVLSVLESVLSKQEWLVGNKPTIADISFITW 174
                 799***********************************998 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.074       2      29 ..     143     170 ..     142     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
     GST_C_6   2 kkdleaLselLgdkkyFfGdkPtslDAl 29 
                 ++ l++L ++L +++++ G+kPt +D +
  CDO72784.1 143 QRVLSVLESVLSKQEWLVGNKPTIADIS 170
                 67899**************99*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1373.09
//
Query:       CDO72785.1  [L=224]
Description: hypothetical protein BN946_scf184994.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   70.4   0.1      3e-19   69.2   0.1    1.7  1  GST_N       Glutathione S-transferase, N-terminal domain
    3.7e-15   55.9   0.0      6e-15   55.2   0.0    1.3  1  GST_C       Glutathione S-transferase, C-terminal domain
    4.5e-14   52.6   0.0    9.8e-14   51.5   0.0    1.5  1  GST_N_3     Glutathione S-transferase, N-terminal domain
    2.6e-13   50.1   0.0    6.3e-13   48.8   0.0    1.7  1  GST_N_2     Glutathione S-transferase, N-terminal domain
      3e-12   46.6   0.0    5.5e-12   45.8   0.0    1.4  1  GST_C_3     Glutathione S-transferase, C-terminal domain
    1.8e-06   27.9   0.0    3.9e-06   26.8   0.0    1.6  1  GST_C_2     Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.077   12.8   0.0       0.16   11.8   0.0    1.5  1  GST_C_6     Glutathione S-transferase, C-terminal domain
       0.11   11.6   0.1       0.16   11.1   0.1    1.2  1  Plant_NMP1  Plant nuclear matrix protein 1 (NMP1)


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.1   1.3e-22     3e-19       2      74 ..       6      81 ..       5      83 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.3e-22
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET...TEEEESHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn...gkkltESraIleYi 74
                ++tly+++g p+ +++  +l+++g+ ye + ldf +ge+k+pe++k np+g++P+ +d+   +++++ES+aIl Y+
  CDO72785.1  6 QITLYTHVGGPNGWKVAFVLEELGLTYESIYLDFAKGEHKAPEYTKYNPNGRIPTIIDHqnnDFVIWESNAILLYL 81
                78*************************************************************************8 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   2.7e-18     6e-15       8      93 .]     119     208 ..     111     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.7e-18
                 HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH..HHHHHTTTTT...TTTSHHHHHHHHHHHTSH CS
       GST_C   8 illlfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpiln..wlqrlglafg...qekfpnlkawlerimarp 93 
                 ++++   +a ek  ++ +  ++++ +v+s+le +l+kq +lvG+k+t+ADi ++++++  ++ +l++ +g   ++++p +++w++++ +rp
  CDO72785.1 119 AFWFKNLHA-EKLPSAIERYEKETQRVFSVLESVLSKQEWLVGNKPTIADISFITWNRsaFNGILKGLPGvdvEKDYPSVYKWHKKLEERP 208
                 555555555.555667888899************************************8877788888889999***************98 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   4.4e-17   9.8e-14       1      72 [.       9      86 ..       9      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 4.4e-17
                EES-TTSHHHHHHHHHHHHHT--EEEE---..TTTT.HHHHHHH-TT--SSEEETT...S-EEESHHHHHHHHHHHH- CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevt..pgeh.deellaknplgkvPvLedd...gealtdSlaIidyLeelyp 72
                Ly   + p+ ++v+ +L+e+gl +e   ++  +geh  +e+ ++np+g++P++ d    + ++++S aI+ yL e+y+
  CDO72785.1  9 LYTHVGGPNGWKVAFVLEELGLTYESIYLDfaKGEHkAPEYTKYNPNGRIPTIIDHqnnDFVIWESNAILLYLIEKYD 86
                7888899******************766655588888****************75434466****************8 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   2.8e-16   6.3e-13       3      67 ..      16      81 ..      14      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.8e-16
                HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE..EEESHHHHHHHH CS
     GST_N_2  3 PwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgq..vineSseIlryl 67
                P  ++v  +l+++gl+++ + + +  kg++k +e+ ++np+g +P+++d++++  vi+eS +Il yl
  CDO72785.1 16 PNGWKVAFVLEELGLTYESIYL-DFAKGEHKAPEYTKYNPNGRIPTIIDHQNNdfVIWESNAILLYL 81
                7789**************6666.778***********************966679**********99 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.4e-15   5.5e-12      18      98 ..     129     216 ..     114     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.4e-15
                 H.HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH........TCCCC-HHHHHHHHHHHTSHHHHHHHCT CS
     GST_C_3  18 a.ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea........ealkkfpklkalyervearpkikaYles 98 
                 +   + e +e++ +++++++e vl+  ++++lvg+k T+AD+++ ++     +         + +k++p + ++++++e+rp++++ l++
  CDO72785.1 129 KlPSAIERYEKETQRVFSVLESVLS--KQEWLVGNKPTIADISFITWNRSAFNGilkglpgvDVEKDYPSVYKWHKKLEERPAVQKVLAE 216
                 356677889999*************..999************99985544444445558865656********************99976 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.7e-09   3.9e-06       3      68 ..     133     202 ..     131     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.7e-09
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHH.HHH...HHS----TT-HHHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrl.raa...gpgfdireaypnlraWle 68 
                 a+er +++ ++ +++le+ L ++ +l G++pt+aDi+++++   +   +    pg d +++yp + +W++
  CDO72785.1 133 AIERYEKETQRVFSVLESVLSKQEWLVGNKPTIADISFITWNRSAfNGIlkgLPGVDVEKDYPSVYKWHK 202
                 7999************************************998774555444556699999999999986 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     7e-05      0.16       2      29 ..     142     169 ..     141     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7e-05
     GST_C_6   2 kkdleaLselLgdkkyFfGdkPtslDAl 29 
                 ++ +++L ++L +++++ G+kPt +D +
  CDO72785.1 142 QRVFSVLESVLSKQEWLVGNKPTIADIS 169
                 57899**************99*****86 PP

>> Plant_NMP1  Plant nuclear matrix protein 1 (NMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     7e-05      0.16      25      53 ..      93     121 ..      85     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
  Plant_NMP1  25 fagleryallewlffkllgdkspftqqnl 53 
                  +g ++y+ll+wlff+  g+ + f q  +
  CDO72785.1  93 VSGDDKYKLLQWLFFQASGQGPYFGQAFW 121
                 57889**************9999988644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1670.74
//
Query:       CDO72786.1  [L=240]
Description: hypothetical protein BN946_scf184994.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1874.42
//
Query:       CDO72787.1  [L=161]
Description: hypothetical protein BN946_scf184994.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-18   65.2   0.5      1e-17   64.9   0.5    1.1  1  Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta


Domain annotation for each model (and alignments):
>> Glyco_hydro_79C  Glycosyl hydrolase family 79 C-terminal beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.5   5.8e-22     1e-17       1     103 []      54     158 ..      54     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 5.8e-22
  Glyco_hydro_79C   1 aYavy.esgklarvvliNleaynststgrpsvtvtlsglseggksvkvkrLtapg..vdadan..itwaGqsfnnksdeldggeeeetvvvvsd 89 
                      aY+vy  s+ + r+++iN++++++t+t rp+++vt+ gls+++++ ++krLtap+  +++d++  +t++G sf+ +++ ++g+e++e+v v++ 
       CDO72787.1  54 AYVVYsTSNIPIRLLVINTNYFDGTGT-RPNTSVTFVGLSTTNGTKQAKRLTAPSalSRVDQGasVTIGGGSFA-ADCLKEGTERTESVAVSE- 144
                      8****877999****************.**************************83544444489*********.599998888888888876. PP

  Glyco_hydro_79C  90 GkvtvdVpaseavL 103
                        +tv V+asea++
       CDO72787.1 145 RAFTVLVNASEALI 158
                      669*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1079.26
//
Query:       CDO72788.1  [L=114]
Description: hypothetical protein BN946_scf184994.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-08   32.2  12.6    0.00048   20.4   2.6    2.5  2  zf-C2H2     Zinc finger, C2H2 type
    6.1e-06   26.6  13.0    0.00047   20.8   1.8    2.5  2  zf-C2H2_4   C2H2-type zinc finger
    1.4e-05   25.3  17.7    2.3e-05   24.6   5.2    3.1  3  zf-H2C2_2   Zinc-finger double domain
  ------ inclusion threshold ------
      0.012   16.0   3.5       0.24   11.9   0.3    2.4  2  zf-met      Zinc-finger of C2H2 type
      0.021   14.8  13.7       0.11   12.6   3.4    2.8  3  zf-C2H2_6   C2H2-type zinc finger
      0.029   14.1   5.3       0.25   11.1   0.3    2.3  2  zf-C2H2_11  zinc-finger C2H2-type
      0.056   13.3   0.6       0.17   11.7   0.8    1.7  2  zf-C2H2_9   C2H2 type zinc-finger (1 copy)
      0.074   13.1   2.8      0.074   13.1   2.8    1.5  2  XPA_N       XPA protein N-terminal
        3.6    7.2   5.3        1.3    8.6   1.9    1.8  2  zf-MYST     MYST family zinc finger domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.6   2.4e-07   0.00048       3      23 .]      63      83 ..      62      83 .. 0.99
   2 !   16.9   2.5   3.3e-06    0.0065       1      22 [.      89     110 ..      89     110 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.4e-07
                ETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                Cp C+ +F+r  +L+rH++tH
  CDO72788.1 63 CPLCPAKFTRTTHLNRHLKTH 83
                ********************9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.3e-06
                 EEETTTTEEESSHHHHHHHHHC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                 ++C+ C+  F+r+++L+rH rt
  CDO72788.1  89 HECDRCHAQFTRSDLLTRHKRT 110
                 78*****************997 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.8   2.4e-07   0.00047       3      23 ..      63      83 ..      61      84 .. 0.94
   2 !   10.9   3.8   0.00034      0.67       1      22 [.      89     110 ..      89     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.4e-07
   zf-C2H2_4  3 CpiCgksFsskkaLlrHlkth 23
                Cp+C++ F++ ++L+rHlkth
  CDO72788.1 63 CPLCPAKFTRTTHLNRHLKTH 83
                *********9999*******9 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00034
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 ++C+ C++ F++++ L rH +t
  CDO72788.1  89 HECDRCHAQFTRSDLLTRHKRT 110
                 68********88888999*987 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.8    0.0014       2.8       6      26 .]      47      72 ..      47      72 .. 0.65
   2 !   24.6   5.2   1.1e-08   2.3e-05       1      26 []      75     100 ..      75     100 .. 0.95
   3 ?   -0.7   0.2       1.2   2.4e+03       2       7 ..     104     109 ..     104     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
   zf-H2C2_2  6 irkHtgekp.y....eCplCdkaFkt 26
                +r+H+g  p +     CplC+ +F++
  CDO72788.1 47 MRSHRGNIPtLpqnkLCPLCPAKFTR 72
                5667755544233338********85 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.1e-08
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFkt 26 
                 +L+rH+++Ht+e+ +eC+ C+  F++
  CDO72788.1  75 HLNRHLKTHTNERLHECDRCHAQFTR 100
                 79*******************99985 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.2
   zf-H2C2_2   2 LrrHir 7  
                 L+rH r
  CDO72788.1 104 LTRHKR 109
                 89**98 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00012      0.24       3      23 ..      63      83 ..      61      85 .. 0.92
   2 ?    4.9   0.3     0.018        36       2      19 ..      90     107 ..      89     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      zf-met  3 CelCnvtfnsesqlksHlqGK 23
                C+lC  +f+  ++l+ Hl+ +
  CDO72788.1 63 CPLCPAKFTRTTHLNRHLKTH 83
                ******************865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.018
      zf-met   2 yCelCnvtfnsesqlksH 19 
                 +C+ C+ +f+    l  H
  CDO72788.1  90 ECDRCHAQFTRSDLLTRH 107
                 6*********87777666 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.8   3.7e+03      21      25 ..      47      51 ..      47      52 .. 0.80
   2 ?    9.3   0.4   0.00058       1.1       4      24 ..      63      83 ..      62      86 .. 0.96
   3 ?   12.6   3.4   5.4e-05      0.11       2      23 ..      89     110 ..      88     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
   zf-C2H2_6 21 kksHr 25
                ++sHr
  CDO72788.1 47 MRSHR 51
                78998 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00058
   zf-C2H2_6  4 CsvCsksFpslqaLggHkksH 24
                C+ C + F   + L+ H+k+H
  CDO72788.1 63 CPLCPAKFTRTTHLNRHLKTH 83
                ********************* PP

  == domain 3  score: 12.6 bits;  conditional E-value: 5.4e-05
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkks 23 
                 heC+ C+++F   + L+ Hk++
  CDO72788.1  89 HECDRCHAQFTRSDLLTRHKRT 110
                 9******************985 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00013      0.25       7      24 ..      63      80 ..      61      82 .. 0.95
   2 ?    5.0   0.8      0.01        20       5      24 ..      89     108 ..      85     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
  zf-C2H2_11  7 CleCGlcftSqlsLsRHl 24
                C +C  +ft    L+RHl
  CDO72788.1 63 CPLCPAKFTRTTHLNRHL 80
                99***************8 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHl 24 
                 + C  C   ft +  L RH 
  CDO72788.1  89 HECDRCHAQFTRSDLLTRHK 108
                 67999*******999****5 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   8.7e-05      0.17       2      25 ..      61      85 ..      60      95 .. 0.83
   2 ?   -1.5   0.0       1.2   2.3e+03       4      20 ..      91     107 ..      88     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
                -B-TTT--B-SSHHHHHHHH.HHHT CS
   zf-C2H2_9  2 plCPvCevkfnswkdlseHi.lsaa 25
                 lCP C  kf   ++l  H+   ++
  CDO72788.1 61 KLCPLCPAKFTRTTHLNRHLkTHTN 85
                69*****************954444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
                 -TTT--B-SSHHHHHHH CS
   zf-C2H2_9   4 CPvCevkfnswkdlseH 20 
                 C  C+ +f   + l  H
  CDO72788.1  91 CDRCHAQFTRSDLLTRH 107
                 88899999877777776 PP

>> XPA_N  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       5.1     1e+04       4      11 ..      63      70 ..      61      72 .. 0.61
   2 ?   13.1   2.8   3.7e-05     0.074       3      27 ..      90     114 .]      89     114 .] 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.1
       XPA_N  4 CdeCgkef 11
                C  C  +f
  CDO72788.1 63 CPLCPAKF 70
                66665555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.7e-05
       XPA_N   3 kCdeCgkefldSyLldnFdysVCDk 27 
                 +Cd C+ +f  S Ll+  +  +CD+
  CDO72788.1  90 ECDRCHAQFTRSDLLTRHKRTCCDS 114
                 7***********************5 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.38   7.5e+02      35      53 ..      63      81 ..      62      84 .. 0.79
   2 ?    8.6   1.9   0.00068       1.3      27      55 .]      83     111 ..      80     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.38
     zf-MYST 35 CefClkYmksakelerHkk 53
                C  C   ++  + l+rH+k
  CDO72788.1 63 CPLCPAKFTRTTHLNRHLK 81
                8888777788889999987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00068
     zf-MYST  27 ankekLyvCefClkYmksakelerHkkkC 55 
                 +++e+L  C++C   ++ ++ l+rHk++C
  CDO72788.1  83 HTNERLHECDRCHAQFTRSDLLTRHKRTC 111
                 56789999********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 659.01
//
Query:       CDO72789.1  [L=608]
Description: hypothetical protein BN946_scf184994.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-20   71.4   0.3    1.4e-19   70.2   0.2    1.6  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.13   2.3e+03      47     100 ..     110     159 ..     109     164 .. 0.69
   2 !   70.2   0.2   7.6e-24   1.4e-19       3     217 ..     194     435 ..     192     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.13
  Fungal_trans  47 GalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlll 100
                   G++fs+++t + +  l++    ++ +  r++++++++++   ++++ l s l++
    CDO72789.1 110 GQHFSRDDTTSLTDRLET----TVIGSSRQDMFYNAPAQLAIYDMQPLDSSLMI 159
                   788888888776555555....34566788888877777777777777766665 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 7.6e-24
  Fungal_trans   3 rffsnfh.pqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   r f n++  ++p+ h p+++++             p l++a+ a Ga +++++++ + + +t  +        r ei+   ++ss ++    + +L 
    CDO72789.1 194 RLFVNTYvLHMPLAHVPTLMEEE----------PLPVLVTAMQACGAMYAHTPAAAK-FIETVLA------TKRDEIIA--ELSSGNKTYDQIAQLT 271
                   67888887889************..........*********************997.4444333......22667666..9999999999999999 PP

  Fungal_trans  99 llelyektss..dralher.....hhgvavrlarslgLhrnpsyvgkks...........lwklweeeaesrrRlwwaaFylDktialklGrpplld 177
                   l++   +t +   r++  r     +hg+ v + r  g+ +n  +++ +            +w++w++ +es +R  w +++ D+++a++++  p+++
    CDO72789.1 272 LASGLIQTIGlfHRDSDQRaksnvYHGMIVMMLRMNGFVDNTRDWKLEAfdlndpdaterSWRRWVK-HESAKRAVWLCYMHDCCHAIYFNLSPTFR 367
                   999999998877344444455556**********************999******************.**************************99* PP

  Fungal_trans 178 dsqinlpLPcddddlwesddaseetlvetk.............................lsneeksrki 217
                    +q +l LPc+d  lw + + +e+  + +k                             + ++++++++
    CDO72789.1 368 TEQFTLGLPCEDA-LWTAKNSAEWVAILQKpspygstevrlcghylkalyyylaqnnpnNAPRPFNVSP 435
                   *************.********99999877666666666555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4146.48
//
Query:       CDO72790.1  [L=540]
Description: hypothetical protein BN946_scf184994.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-35  122.9   0.1    2.1e-35  122.1   0.1    1.4  1  Pro-kuma_activ  Pro-kumamolisin, activation domain
    9.1e-06   25.1   1.0    1.8e-05   24.1   0.7    1.6  2  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.1   2.4e-39   2.1e-35       2     142 .]      13     153 ..      12     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 2.4e-39
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaq 96 
                     g+++ g+a+++  l++ri+L q++  +le++l+dvsdp s+ny+khl++++v++   p++++++aV +wL +++++as +s+ ++w++++++va+
      CDO72790.1  13 GFKYLGKADENAILNLRIALVQSDPVELEAALHDVSDPRSKNYRKHLSKAQVEAFAIPEPASVKAVNAWLAKHNVTASTISPAGDWLSMQIPVAK 107
                     6778999**************************************************************************************** PP

  Pro-kuma_activ  97 verllktsfeaYshkkgssslarcdeyslPealknyvdyihptdnf 142
                     ++ +l t+f  Y h k+++s++r+ + s+P+ +k +  +ihpt++f
      CDO72790.1 108 ANAMLSTQFCEYVHVKTNTSIIRTLSFSIPDTVKGHLAAIHPTTSF 153
                     ********************************************98 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.7     2e-09   1.8e-05      80     263 ..     282     472 ..     270     482 .. 0.73
   2 ?   -3.0   0.0      0.37   3.3e+03     211     240 ..     483     512 ..     474     518 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2e-09
                   SSSB-SSTTSEEEEEE-SSTTSB-HH...HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHH..HHHHHH.CCT-EEEEE--SS-T-HHEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  80 gekngvapgakilsvkvldtsggsmetg.teliraieeaaedkvdvinmslgestslpktgrsieal..ainravnkkgvlvviSaGNngktgsslq 173
                   ++   va+++ i+ v v++++      g  +l++++ e+ +  ++v+  s+g  t+++ +  + ++l  a+ ++   +g+ v +++G  g +g +++
    CDO72790.1 282 QYTTAVATNVPITIVTVGSDNHDGIA-GfLDLVNNLLEQEQ-LPQVLTTSFG-FTEKDIPAAIGSNLcnAYAQLG-ARGTTVLFASGDGGVSGIQAT 374
                   55667788888888888877776663.43666666655544.7779999999.6666666665555566777777.78************8888555 PP

                   -TTCEEC...TTTSTTCEEEEEES...................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHH CS
                   xxxxxxx...xxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 174 agspvgt...pstsknvitvgayt...................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTS 248
                   + ++      pst+  v++v +                      + +   f s+G ++     pdi+a ++  ++ + + +        +q + GTS
    CDO72790.1 375 QDCTTFLptfPSTCPFVTSVDSPIsspdrdnqdaavsgylkklGKTNAGLFNSSGRAF-----PDIAAQAQG-FQVVVNGQ--------VQPVAGTS 457
                   5565544445666666666666557888888777777777998777888999999998.....8*****998.55555555........899***** PP

                   HCHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxx RF
  Peptidase_S8 249 mAsPnaagaaAllls 263
                   +AsP +a+ +All +
    CDO72790.1 458 AASPTVASLVALLND 472
                   ************976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.37
                   .....-EEEE-S-CCCCCCCCCHHHTTTHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 211 gklkpdivapGgnivstwsrqsnnsaglss 240
                   g l+p + a G++ + ++++  n+++g+ +
    CDO72790.1 483 GFLNPFLYAQGASALNDITQGHNPGCGTDG 512
                   67899999************9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3533.61
//
Query:       CDO72791.1  [L=472]
Description: hypothetical protein BN946_scf184994.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-10   40.4   0.0    3.8e-10   40.0   0.0    1.1  1  O-FucT    GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   2.1e-14   3.8e-10     193     333 ..     301     459 ..     285     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2.1e-14
      O-FucT 193 lalHLRrekDflaaCehgggeeellaspre...............s.rreegk..ltpeecvpsleeialqlkgllkel...kltsvfvAtdeiyggee 270
                 + +H Rr+ D+   C++    +e + s  +               + ++++++  + + +c+p++eeia +++g+l      +++++++ t  +++   
  CDO72791.1 301 MVIHVRRG-DYETHCRTLAMWSEDFVSVNAfpempdafavppheqWgNNTAENveIYRARCLPTFEEIAHKVRGVLATPeaqGVKRLYIMTNGRPE--Y 396
                 579*****.******9987777666666667888999999998762544444456****************9998866544499********9997..6 PP

      O-FucT 271 lkelkkefpnlvkvtkeklaskeelekfkdgsvaaiDqiicsrsdvFigtyeStfsafvkreR 333
                 + +lk ++  + k +  + +    l++ +++ + a+Dq+++ r++vFig+ +St +++   +R
  CDO72791.1 397 IRDLKGALWGVGKWDMISSSRDLVLTWEQKFASHAVDQLVAQRAQVFIGNGFSTLTSNAVMMR 459
                 ********99559988888888889999999999*********************99877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3051.32
//
Query:       CDO72792.1  [L=539]
Description: hypothetical protein BN946_scf184994.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   30.2   0.0    4.8e-07   29.5   0.0    1.2  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.7e-11   4.8e-07      18     164 ..     249     413 ..     234     424 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.7e-11
                 SCGGSHHHHHHHHHHHT-SEEEEEEE......C.TGGTTSSTTTGCTH.....HHHHHHHHHHHHHHHTT-EEEEEEESS...............TTTC CS
   Cellulase  18 gnpyttkalidevkdagfntvRlpvs......w.gelvenapdykvde.....nslerveevvkyakenglyvildiHse...............egwl 89 
                 + ++ t++ i++++ ag n +Rlp+       w +    ++++ +v e        + +  ++ +a + gl+v+ld+H                  +wl
  CDO72792.1 249 YDTFITEEDIAQIAGAGLNWIRLPIPfwavdtWsD-VGVDGQGQTVSEpflarVCWKYILRLIGWARKYGLRVLLDLHTIpgsqngynhsgklgsLNWL 346
                 45568999*****************9755555442.22223333445522222555556799*****************98888888888777776777 PP

                 SSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTT CS
   Cellulase  90 tkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgp 164
                 +   g ++ +++ +++ ++ + i++     d v if ++NEP+  +    +    ++ + +++ +a++++R++ +
  CDO72792.1 347 NGPMGLANAERSLDYIRSIAEFISQPE-YRDVVQIFGILNEPFLPTI---G----REPIESFYLRAYEMVRNITG 413
                 777778888888899999777777743.366677**********433...3....899************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3447.40
//
Query:       CDO72793.1  [L=581]
Description: hypothetical protein BN946_scf184994.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-18   68.1   0.2    6.1e-17   62.4   0.0    2.9  3  DUF563    Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.076   1.4e+03      13      84 ..     131     201 ..     125     211 .. 0.80
   2 ?    1.5   0.2     0.016   2.8e+02       2      30 ..     228     252 ..     227     270 .. 0.82
   3 !   62.4   0.0   3.4e-21   6.1e-17     103     206 ..     424     536 ..     367     539 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.076
      DUF563  13 rlllleqlvlddddrilvpalaspqpfqrell.kllgirpekrikveldepvhveklivpvpprssggfqgal 84 
                  + l+++ ++ +++ ++v +  +p++f + +l    g+++e+      ++  ++e+  +++p++ + ++ g +
  CDO72793.1 131 GWTLFQNVYMSNGTMYIVTS--RPSSFPDISLmTSTGLPAENTPENIAARMPTAEDMAFLTPQEAHDRWGGDV 201
                 56788999999998888999..777777777779999977777766678999999999999999998887765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.016
      DUF563   2 nygHwlvdvlprlllleqlvlddddrilv 30 
                 +y+H+  ++l   +++ q   + d    v
  CDO72793.1 228 HYYHFCAEWLFGAWAFWQGAWNAD----V 252
                 899*************99988887....3 PP

  == domain 3  score: 62.4 bits;  conditional E-value: 3.4e-21
      DUF563 103 kptrvlyisRlkagsRrilNee..evl....kllpkrgfe..vvdpeslsfeeqiklfssakvivgphGsgltnliFm..ppgttvielvppnrldnsf 191
                 + + ++yisR +a +R++l  +  +++    + ++k+g+e  vv+ e+ls e+q+++ + + ++ g+hG glt+li+m   p +tvie++ p+++ + +
  CDO72793.1 424 SDIVITYISR-QAARRHLLDPDhdALVaaleAMCKKHGWElnVVQAEKLSKEQQLAIAARTTLMLGVHGNGLTHLIMMpvTPVSTVIEIFYPQGFAQDY 521
                 44689*****.99*******665455466779999***9999************************************44346**************** PP

      DUF563 192 enlaallglkyayvl 206
                  + a++lg++++++ 
  CDO72793.1 522 HWTAHALGMRHFAIW 536
                 ***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3843.06
//
Query:       CDO72794.1  [L=337]
Description: hypothetical protein BN946_scf184994.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-25   89.1   7.2    4.7e-25   88.6   7.2    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   7.2   2.6e-29   4.7e-25       6     203 ..      38     254 ..      33     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 2.6e-29
                 HHHHHHHHHHHHHHHHHHHHHH.HHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHH CS
         MIP   6 kflravlAEflatlllvfigvg.salnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGa 103
                 + l +++AE+ +t+l+ f+g g +a+ v  ++  l+    ++++++ +a+++++a ++ +    S + +NP +T+ ++v+  ++ ++a  Yi+ Q++Ga
  CDO72794.1  38 HWLVECVAEATGTFLYTFAGAGaTAAYVLGNI--LGIPGLGSVLQIGIAYAVGIALALAVCLPTSQGQFNPGITVHAVVFHGMPPFKAFRYIIFQIMGA 134
                 56779*****************4444444444..33334489********************************************************* PP

                 HHHHHHHHHHCHHH.....................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHH CS
         MIP 104 ivaaallklltkgl.....................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliil 181
                  +a++ +++ +k+l                        ag f  +++pg + g  l  E+++ fvL lv+fa  ++ +++++ + ++ +i l++ +++ 
  CDO72794.1 135 YIACLSVYVQYKQLihaavdalkakgtydaimftpSGPAGIFGLYVNPGSNLGYVLLNEFVCDFVLGLVIFACSEPGNNMTSPTTMSWLISLAYGVVVW 233
                 ********************************9998899******************************************888999999999999999 PP

                 HHHHHHST-SSHHHHHHHHHHH CS
         MIP 182 vgipltGaamNpArslgpavvl 203
                   +p+ G a N Ar+lg ++++
  CDO72794.1 234 GYAPV-GLAANSARDLGGRFAA 254
                 88888.***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2218.88
//
Query:       CDO72795.1  [L=247]
Description: hypothetical protein BN946_scf184994.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-26   92.1   2.8    5.4e-26   91.7   2.8    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   2.8     3e-30   5.4e-26       6     177 ..      39     229 ..      34     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 3e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSS.HHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHH CS
         MIP   6 kflravlAEflatlllvfigvgsalnvkkkvsslaslvs.vtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGa 103
                 + l +++AEf + ++ + +gvgsa+++  +   +a+l   ++l ++  a++l++  ++ + a  SG+H+NPavT+a+ + ++ + ++a+ YivaQ+lGa
  CDO72795.1  39 HWLVECIAEF-SFMIAIDAGVGSAATYLLSN--TAQLNGlGSLFQIGTAYALGILFALVVCAPTSGGHFNPAVTIAFTILKRCTPRKALRYIVAQILGA 134
                 5567889998.67778888888777554433..332322489********************************************************* PP

                 HHHHHHHHHHCHHH.....................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHH CS
         MIP 104 ivaaallklltkgl.....................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllva 177
                  +a++l+++    l                     +  ag fa +  pg+s g+ +  E+i+ f++ lv++a  d+++     + ap  + ++++
  CDO72795.1 135 YIACLLIYVQWRDLimevtelleasgkldavlftaNGPAGVFALYATPGVSLGRIFLNEFICDFMIGLVIWACLDPTNFSAPPSTAPWIVSFVYS 229
                 ********999999999***************998888999***********************************9988777779988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.50
# Mc/sec: 1482.71
//
Query:       CDO72796.1  [L=397]
Description: hypothetical protein BN946_scf184994.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 2682.40
//
Query:       CDO72797.1  [L=353]
Description: hypothetical protein BN946_scf184994.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.8e-103  344.9   0.0   4.3e-103  344.7   0.0    1.0  1  Ferrochelatase  Ferrochelatase
    0.00084   19.6   0.0        9.7    6.6   0.0    3.2  3  CbiX            CbiX
  ------ inclusion threshold ------
       0.29    9.8   0.0       0.39    9.4   0.0    1.1  1  UNC-79          Cation-channel complex subunit UNC-79


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.7   0.0  7.3e-107  4.3e-103       6     316 ..       1     313 [.       1     314 [. 0.97

  Alignments for each domain:
  == domain 1  score: 344.7 bits;  conditional E-value: 7.3e-107
                     EEE----SSCCCHHHHHHHHCT-TTTS-S-TTTHHHHHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHHHHHH-...--EEEEEEESS CS
  Ferrochelatase   6 LlnlGgPekpedvrpflenllsdrrvielplllqkllaklilkerlekvaekYekigggSPlneitrkqaealekelaerg...idvkvylamry 97 
                     ++n+GgP++ ++ ++fl+nl+ d ++i+lp  +q +la +i+k+r+++++++Y+ igggSP++++t+ q e +++ l+e +   +++k y+a+ry
      CDO72797.1   1 MMNMGGPSTVSETHDFLKNLFLDGDLIPLP--FQSILAPIIAKRRTPQIEKQYADIGGGSPILHYTKLQGERMAALLDELHpetAPHKSYVAFRY 93 
                     79**************************98..**********************************************999999*********** PP

                     SSSBHHHHHHHHHCTT-SEEEEEES-SS--TTTHHHHHHHHHHHHHH.TT-SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-...HC.C-EEEE CS
  Ferrochelatase  98 wePsiedaleelkadgvervvvlplyPqysasttgssleeleralkk.kreapevrvirqfydhpgyiealaesikealeelp...eekkakllf 188
                      +P++++++++lkadgv+r+v++++yPqys+sttgssl+el+r  k+ +   +e++vi+++ +hpg+iea+a++i++al+++p   ++  ++llf
      CDO72797.1  94 AKPLTDETARQLKADGVKRAVAFTQYPQYSCSTTGSSLNELYRRGKAgEAGDIEWSVIDRWGTHPGFIEAVAQNIERALAKFPqdkRS-DVVLLF 187
                     *********************************************998899*******************************965333.6***** PP

                     EEE--BHHHHT.TT-SHHHHHHHHHHHHHHHTTT-S-EEEEEE---SSS-BSSSBHHHHHHHHCCC.-S-EEEE-TT-SS--HHHHIIIIIIIIT CS
  Ferrochelatase 189 saHglPeravkkkgdpYqqqveetarlvaealglkeevelayqSrvGpeeWlePdtddtleelaekgvkaivvvpigFvsDhlEtleeldieare 283
                     saH+lP+++v+ +gdpY  +v +++++v+++lg ++ ++l++qS+vGp  W++P+t+d+++ la+ g k+++++pi+F+sDh+Etl+eld e+ +
      CDO72797.1 188 SAHSLPMSVVN-RGDPYVMEVSASVAAVMDRLGHSNPYRLVWQSQVGPSAWMGPQTSDAIKGLARLGRKQVILIPIAFTSDHIETLYELDLEYVK 281
                     **********6.5*******************99999********************************************************** PP

                     TSTT..CCCEEE----TT-HHHHHHHHHHHHHH CS
  Ferrochelatase 284 laeeaggekfvrvptlndspafiealadlveee 316
                     + +e+g+ +++r+++lndsp fi+aladl++++
      CDO72797.1 282 EGKELGM-EIHRAESLNDSPVFIRALADLAAAH 313
                     *******.*********************9987 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0075        45      10      57 ..      69     115 ..      60     116 .. 0.79
   2 !    4.8   0.0    0.0059        35      29      57 ..     157     185 ..     150     192 .. 0.86
   3 !    6.6   0.0    0.0016       9.7      33     106 ..     235     307 ..     206     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEE CS
        CbiX  10 eeveklaeelrekgpfkpvelgfleleepsleealrelaeqgvkrivv 57 
                 e++++l +el+ + + ++  ++f  +++p  +e+ r+l + gvkr v+
  CDO72797.1  69 ERMAALLDELHPETAPHKSYVAF-RYAKPLTDETARQLKADGVKRAVA 115
                 45666677777766656666777.8899****************9986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0059
                 EECESCCCECCSCCSSHHHHC-SBSEEEE CS
        CbiX  29 elgfleleepsleealrelaeqgvkrivv 57 
                 ++gf+e++++++e al+++ + + +++v+
  CDO72797.1 157 HPGFIEAVAQNIERALAKFPQDKRSDVVL 185
                 78*****************8888888775 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0016
                 SCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHH.HCT--SSSS-TTEEEEE---CCCSCCHHHHHH CS
        CbiX  33 leleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpe.eleeaeeahpkdveieytepLGthplvaevlk 106
                      p+  +a++ la+ g k+++++P+  f++ h+++ + e  le ++e ++ ++ei+ +e L ++p ++++l+
  CDO72797.1 235 SAWMGPQTSDAIKGLARLGRKQVILIPI-AFTSDHIET-LYElDLEYVKEGKELGMEIHRAESLNDSPVFIRALA 307
                 555679999******************7.89999***9.554368888888889999**9999999999988876 PP

>> UNC-79  Cation-channel complex subunit UNC-79
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   6.6e-05      0.39      59     113 ..     161     215 ..     157     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.6e-05
      UNC-79  59 ldsLpylvasslavlPselhkdivnllcevilPftitredeeeesyaslsvsavl 113
                 ++ ++ ++  +la +P+    d+v l++ + lP++++++++    ++s+sv+av+
  CDO72797.1 161 IEAVAQNIERALAKFPQDKRSDVVLLFSAHSLPMSVVNRGDPYVMEVSASVAAVM 215
                 67778889999****************************9999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2474.17
//
Query:       CDO72798.1  [L=357]
Description: hypothetical protein BN946_scf184994.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   44.9   0.0    1.2e-07   31.6   0.0    2.2  2  Q_salvage  Potential Queuosine, Q, salvage protein family


Domain annotation for each model (and alignments):
>> Q_salvage  Potential Queuosine, Q, salvage protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   6.9e-12   1.2e-07      98     201 ..     118     233 ..      87     240 .. 0.80
   2 !   11.2   0.0   1.1e-05      0.19     223     270 ..     289     343 ..     269     356 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6.9e-12
   Q_salvage  98 llreagkvlle...........kfdgsfvnlikkanksaakLvnlvveefpsFrDeavyegkkvrlyKRAqilvaDlwaafegeg.lgefedidkltmf 184
                 +l+e+g++l++           +   + ++  k+ +++a+  ++ +v+ +p F+D a + g+ v+ +K+A +    +   f +++ +      ++l +f
  CDO72798.1 118 TLKETGEALIKggypdlgsfvlEALKEGEKAKKAGQDEAEVALERLVRAIPAFQDMAFVYGQPVYCFKKAMLTLHSVALRFGNSEsAIPVPRTSHLPIF 216
                 6666666666666653332211112222333445677889999**************************************9855377899******** PP

   Q_salvage 185 ADyrvpqvLrqlgvLey 201
                 AD+ +p +L++lgv++ 
  CDO72798.1 217 ADNVIPSLLVHLGVIDL 233
                 **************986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.1e-05
   Q_salvage 223 veiRacsiwavelireeiekkkeeakek.......vnailiDffLwdlakeleke 270
                   +Ra++i a+eli ++ ++  +++ ++       ++  ++D ++w +ak++++ 
  CDO72798.1 289 FVLRAAAIDACELIVQTAKDLDTSDAAEdlswlkeITPPEVDAWIWAVAKDRRDY 343
                 459****************9999888779********************987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2665.33
//
Query:       CDO72799.1  [L=866]
Description: hypothetical protein BN946_scf184994.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-72  244.1   0.0    4.6e-72  242.7   0.0    1.8  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.7   0.0   2.5e-76   4.6e-72       2     290 ..     223     592 ..     222     594 .. 0.88

  Alignments for each domain:
  == domain 1  score: 242.7 bits;  conditional E-value: 2.5e-76
                 EEEEESSCGGTCSHHHHHHHHHHHCT-........EEEEECCGGCCSSSTT--HHHHTTTT--...............................EEECC CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldals......rvlevtveeklgeslaeaaefrsevisvlkkvkttd........................dtrka 70 
                 v+iv++ +++ +i++++e+a +L+++ +      r++ v+v+++l+ s  + a+   +++ +   + +++                        +++++
  CDO72799.1 223 VLIVTKARDNRLIKLTRELALYLMQKRPkgnnggRGMIVYVDSQLKTSRRFDAAGIERDHPEFFVPFPKRrtssssslmsytndtlpssegqlrYWTAE 321
                 89************************4479***************9998777665555555444444444557789*********************** PP

                 C-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEE........................ CS
  NAD_kinase  71 leafadagvdliivvGGDGTaldvarllqkaeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevld........................ 145
                 ++   ++ +d+++++GGDGT+l+ ++l+q+ ++Pvl + +G++gflt+f+++++a+++++ ++++irv++r++++                        
  CDO72799.1 322 MCSRSPHLFDFVVTLGGDGTVLFTSWLFQRIVPPVLPFALGSLGFLTNFDFANYAKVMDNAIDNGIRVNLRMRFTctvyraispdknskacraikkgdt 420
                 ***************************************************************************666666666666666666666666 PP

                 .EEEEETTE.......................................EEEEEEESSEEEEEESSSSS-EEEEEEETTEEEEEEEESEEEEE-TGGGGT CS
  NAD_kinase 146 .avimrskgee.................................diadiviensvlnevviirgpgstlielelyvdtelleadqldglivstPtGsta 210
                           +                                 +++ ++    vln++v++rgp + ++ lel  d++ l+++q+dgl+v+tPtGsta
  CDO72799.1 421 gE--------IlmrnverggwealesgmqtegkvgakdkeimcfSTRPVE-CFEVLNDLVVDRGPSPYVSLLELFGDEHHLTTVQADGLCVATPTGSTA 510
                 63........0444444447777888888888888888888886333333.4468******************************************** PP

                 HHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-..SS--EEEEETTTEEEEE-TT-EEEEEEESSEEEEE CS
  NAD_kinase 211 yslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva..srseallaldGseelelspgdevrvtasdkkfkli 290
                 yslsaGg+l++P+++aili+picPh+ls+rp+ +++ ++lr+ v+  srs+a++ +dG+ ++el++gd +++tas+++f ++
  CDO72799.1 511 YSLSAGGSLVHPEIPAILITPICPHTLSFRPMLLPDTMELRVCVPfnSRSTAWASFDGRGRVELKQGDHIKITASKYPFPTV 592
                 ******************************************************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5650.48
//
Query:       CDO72800.1  [L=285]
Description: hypothetical protein BN946_scf184994.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2094.70
//
Query:       CDO72801.1  [L=99]
Description: hypothetical protein BN946_scf184994.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 704.58
//
Query:       CDO72802.1  [L=499]
Description: hypothetical protein BN946_scf184994.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-13   49.3   3.3    4.9e-13   49.3   3.3    2.3  2  HMG_box         HMG (high mobility group) box
    5.7e-05   23.6   1.3    5.7e-05   23.6   1.3    2.3  2  HMG_box_2       HMG-box domain
  ------ inclusion threshold ------
       0.37   11.5   6.6       0.68   10.6   6.6    1.3  1  SLY             Lymphocyte signaling adaptor protein
        3.2    8.6  11.3        8.4    7.2  11.3    1.7  1  PHC2_SAM_assoc  Unstructured region on Polyhomeotic-like prot
        4.4    5.7  10.3          6    5.2  10.3    1.1  1  Rrn6            RNA polymerase I-specific transcription-initi


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   3.3   1.4e-16   4.9e-13       1      69 []      24      97 ..      24      97 .. 0.94
   2 ?   -3.8   6.9         5   1.8e+04      39      66 ..      98     125 ..      97     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 1.4e-16
                --SS--HHHHHHHHHHHHHHHHS.....TTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  1 pkRplsafflfskeqraklkaen.....PelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69
                ++Rp++a++l++ +  +++k+       P+ k ++is++lg+ W+ + e+ ++ Ye++a+ +k++++k++p+yk
  CDO72802.1 24 IPRPPNAWILYRTARMKEIKEYEdqlgiPHTKQSDISRTLGDAWRTEREDIRQIYEKAAAIAKEKHKKKYPNYK 97
                68******************96445555*********************************************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5
                 HHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  39 WkalseeeKkkYeekaekekaryekekp 66 
                 ++  s+eeK+  +e+a+++k+r ++e +
  CDO72802.1  98 YRPRSKEEKRLAREEAKAAKKRAQEEAK 125
                 666789999999**********999876 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.3   1.6e-08   5.7e-05       4      72 ..      22      96 ..      19      97 .. 0.90
   2 ?   -1.2   7.1      0.88   3.2e+03      47      70 ..     102     125 ..      97     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.6e-08
                .-..SS--HHHHHHHTTHHHHHHH....T---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2  4 pk..aarnAYalfvqemipelkrk....GnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72
                pk  +++nA++l+ + + +e+k+     G p  + +++s+ +++ W++ +e+ ++ Ye+ A + k++ ++  ++y
  CDO72802.1 22 PKipRPPNAWILYRTARMKEIKEYedqlGIPHTKQSDISRTLGDAWRTEREDIRQIYEKAAAIAKEKHKKKYPNY 96
                5544789***************998999**************************************999887766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.88
                 -HHHHHHHHHHHHHHHHHHHH-SS CS
   HMG_box_2  47 seeeKekYeekAkedkkrydreal 70 
                 s+eeK    e+Ak+ kkr+++ea+
  CDO72802.1 102 SKEEKRLAREEAKAAKKRAQEEAK 125
                 78999999**************97 PP

>> SLY  Lymphocyte signaling adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.6   0.00019      0.68      44     149 ..      54     157 ..      35     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
         SLY  44 kkasssggkLGKKmraisrTmrkkmgKkyvkaLseekeedeeegsdspsspdesedgestekvslkasdseeslrsslsgqsSsssgvtstssgtsnrd 142
                 +k+s+ +  LG  +r  ++ +r+   K    a+++ek++++  + +  +  +e+++    e  + k+  +ee      +g+  s++  t+tssg     
  CDO72802.1  54 TKQSDISRTLGDAWRTEREDIRQIYEK--AAAIAKEKHKKKYPNYKYRPRSKEEKRLAREEAKAAKKRAQEEAKAAKAAGRKASGGRSTTTSSGEASSS 150
                 344566777888888777777766644..467999986666666555555556666666666677888889988899999999999*********999* PP

         SLY 143 Slrleee 149
                  ++le+ 
  CDO72802.1 151 AVKLEDL 157
                 *****97 PP

>> PHC2_SAM_assoc  Unstructured region on Polyhomeotic-like protein 1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.3    0.0023       8.4      13     102 ..      86     178 ..      79     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0023
  PHC2_SAM_assoc  13 pdkskevkeaaakhaRRrgkkrssselskeakkq.pqqsqplsvsskllsqksqeeSsrcsDnSSy..eEplsplSasssssrrrrgerelel 102
                     ++k+k++ ++ + + R + +kr   e +k+akk  ++++++++ +++++s       s ++  SS    E+l+p+S +s  s++  ++ e+ l
      CDO72802.1  86 KEKHKKKYPNYKYRPRSKEEKRLAREEAKAAKKRaQEEAKAAKAAGRKASGGRSTTTSSGEASSSAvkLEDLEPVSRGSGPSPPLDSDDESSL 178
                     566777777788899999****************444555667777777744444445555555557779*********99988887766555 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  10.3    0.0017         6     685     811 ..      14     156 ..       4     188 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0017
        Rrn6 685 ssssssedpelsr......edpldalsrytklikssptsls..rs.vsniLshWelg.sdpaeydwqrtesale.aeeq.....rqrarrkrekrrrrk 767
                 s+++++++p+++r         +++ ++++++++++  + +  ++  +++ + W ++ +d +++ +++++ a e  + +     + r r+k+ekr  r 
  CDO72802.1  14 SKKKPAQRPKIPRppnawiLYRTARMKEIKEYEDQLGIPHTkqSDiSRTLGDAWRTErEDIRQIYEKAAAIAKEkHK-KkypnyKYRPRSKEEKRLARE 111
                 55667788888888875542222224444444444444444334424455578****97777666665555555233.357889666666666666666 PP

        Rrn6 768 eklklasraeassss.s..ssqssssksssssssqlpsssqvptlpd 811
                 e  ++++ra+++ ++ +  ++++s    s+++ss  +sss v  l+d
  CDO72802.1 112 EAKAAKKRAQEEAKAaKaaGRKASGG-RSTTTSSGEASSSAV-KLED 156
                 65333333332222202002222222.223333333333322.2444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 3382.24
//
Query:       CDO72803.1  [L=412]
Description: hypothetical protein BN946_scf184994.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   40.8   0.7    3.5e-10   40.2   0.7    1.3  1  HMG_box    HMG (high mobility group) box
     0.0012   19.3   0.3     0.0023   18.5   0.2    1.5  1  HMG_box_2  HMG-box domain
  ------ inclusion threshold ------
      0.011   14.3   7.4      0.015   13.8   7.4    1.1  1  Rrn6       RNA polymerase I-specific transcription-initiation
       0.88    9.5   8.7        1.6    8.7   8.7    1.4  1  BASP1      Brain acid soluble protein 1 (BASP1 protein)


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.7   7.8e-14   3.5e-10       1      69 []      18      88 ..      18      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 7.8e-14
                --SS--HHHHHHHHHHHHHHHHSTTS-..HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  1 pkRplsafflfskeqraklkaenPelk..naeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69
                p+Rp+++f+l++ ++ ++++ +  + k    + s+++g+ W+ +++ +++ Y+e+a++   ++ + +p+yk
  CDO72803.1 18 PPRPPNCFILYRIAKLEEMRRQAGGKKtlMGDASRIIGKWWRRETPVVRRIYKEEAARKAREHAERYPHYK 88
                89*************************999****************************************8 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     5e-07    0.0023       3      66 ..      17      82 ..      15      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5e-07
                -.-SS--HHHHHHHTTHHHHHHH.T---SSHHHHTGGGHHHHHHS-HHHHHHHHHHH.HHHHHHHH CS
   HMG_box_2  3 kpkaarnAYalfvqemipelkrk.GnpviglaevsklcsekWkalseeeKekYeekA.kedkkryd 66
                +p +++n ++l+   + +e++r+ G +   ++++s+ +++ W+      +  Y+e+A ++ +++++
  CDO72803.1 17 QPPRPPNCFILYRIAKLEEMRRQaGGKKTLMGDASRIIGKWWRRETPVVRRIYKEEAaRKAREHAE 82
                57899******************9999*****************9999999998876155555554 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   7.4   3.4e-06     0.015     688     830 ..      11     186 ..       2     191 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-06
        Rrn6 688 sssedpelsr...edpldalsrytklikssptsls..rsvsniLshWelg...sdpaeydwqrtesaleaeeq...........rqrarrkrekrr.rr 766
                 s++++ + +r      l++ +++++++ ++  +++  +++s+i++ W         + y ++++ +a e  e+            q+ar++ +k+r ++
  CDO72803.1  11 SEEMEGQPPRppnCFILYRIAKLEEMRRQAGGKKTlmGDASRIIGKWWRRetpVVRRIYKEEAARKAREHAERyphykyqprtrEQKARDRGQKHRgSK 109
                 333333333321122333355555555555444446677********9884444445566666666666333378898877555444444444433234 PP

        Rrn6 767 keklklasraeasssssssqssssksssssssqlpsssqvptlpd..........fslsmqissSQvvsss...mSQ 830
                 + k k++ ++ ++++++ ++ sss+ + +s+s +++s+ +p  ++          f++ +  + S+++s+s   +SQ
  CDO72803.1 110 RGKGKKNTSTTRAETPRCASRSSSAGTPPSDSEPSTSNGAPLYAGpihsaswvspFATHPPYQLSSTTSESagpSSQ 186
                 445555555555666666666666666666666666666666666**********9999999999999999999888 PP

>> BASP1  Brain acid soluble protein 1 (BASP1 protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.7   0.00036       1.6     113     226 ..      72     194 ..      59     198 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00036
       BASP1 113 qaaaaapaasaeapka..sepsaeakasqpsepaaskadekskeegeakktEApaapaaketkseaapasdskPsssEaap........sskeapaate 201
                 +aa +a + ++  p       + e ka    ++  +    k+k ++ +++ E p    a    s ++p+sds Ps+s+ ap        +s  +p at+
  CDO72803.1  72 EAARKAREHAERYPHYkyQPRTREQKARDRGQKHRGSKRGKGKKNTSTTRAETPR--CASRSSSAGTPPSDSEPSTSNGAPlyagpihsASWVSPFATH 168
                 4444444444444433213445567777777655555556666666666666665..5567999*************9998333323223444555555 PP

       BASP1 202 Apsst.akAsepaaPaeeakaseaPa 226
                  p +  +  se+a+P+ +  +  aPa
  CDO72803.1 169 PPYQLsSTTSESAGPSSQNMTLPAPA 194
                 55443356677888887777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2731.15
//
Query:       CDO72804.1  [L=259]
Description: hypothetical protein BN946_scf184994.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-45  153.5   0.0    9.8e-45  153.3   0.0    1.0  1  DUF829    Eukaryotic protein of unknown function (DUF829)
     0.0071   16.1   0.3       0.01   15.6   0.3    1.2  1  ABA_GPCR  Abscisic acid G-protein coupled receptor
  ------ inclusion threshold ------
      0.081   11.7   0.0       0.11   11.3   0.0    1.1  1  Gsf2      Glucose signalling factor 2


Domain annotation for each model (and alignments):
>> DUF829  Eukaryotic protein of unknown function (DUF829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.0   1.6e-48   9.8e-45       1     241 []       9     254 ..       9     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 153.3 bits;  conditional E-value: 1.6e-48
      DUF829   1 plvvllGWlgarpkhlaKYsdlYrk..pgativvitspsrdllwrt....krlasaldellellsesqrseywpilfhvfsngGpllylallaalqkae 93 
                 +lv+++GWlga+   ++KYsd Yr+  p+   +v+ +++  +        +++ ++++++++ ls+s++  + +il+hv+sngG+  +  ++ a +k+ 
  CDO72804.1   9 TLVIIFGWLGAKRPTIQKYSDAYRRlyPSSAQLVVNADTLRFWKLPavrnRAMGPVVSRVADYLSDSKEGGAPRILLHVMSNGGVCSLVDFASAVRKRG 107
                 69***********************8877777777777766653336777******************************************7777776 PP

      DUF829  94 sfkkllpelkglv.wDSaPgaghylksakafsavlpksssvkivvktrsllalalaltllvelilglesvasrsrkalndlatkplr...cpqlylySk 188
                    ++ +  k+ + +DSaP+  +++   +af+a++       i ++t +ll ++  +t ++ ++++l+++++r   a+nd a+ p +   +p+lylyS+
  CDO72804.1 108 --IRAPEGTKCAIvLDSAPAPVTFSIMNRAFTASIRNV---FIKYLTMALLSSIYVCTRIIQILFRLPKAMEREMAAVNDPALLPWTsvkTPRLYLYSS 201
                 ..444444555444**********99999999999988...5678899999*****************************9998877777********* PP

      DUF829 189 aDeviswrdveshaeeaeqrgvkvtakkfedspHvahmrkhperYvekvvefl 241
                  D+++++  ve+h++ea+ +g +v+++ f +s+Hv+h r++pe+Y++++  f+
  CDO72804.1 202 GDTIVPATGVEKHMQEARIIGFPVQSVHFGQSAHVSHARNDPEKYWNAIRVFW 254
                 **************************************************999 PP

>> ABA_GPCR  Abscisic acid G-protein coupled receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.7e-06      0.01      91     142 ..     128     177 ..     119     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
    ABA_GPCR  91 tissllrllpsslqllkssllnLllselmgiYvistllllrsnLPkevsskl 142
                 t+s++ r++  s++  +  ++ L ++ l  iYv++ ++++   LPk +++++
  CDO72804.1 128 TFSIMNRAFTASIR--NVFIKYLTMALLSSIYVCTRIIQILFRLPKAMEREM 177
                 89999999999997..8999**************************997765 PP

>> Gsf2  Glucose signalling factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05      0.11     226     255 ..       5      34 ..       1      47 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.8e-05
        Gsf2 226 delkeelkslGWiGarratldeYkekyyey 255
                 d++ + ++ +GW+Ga+r t+++Y + y+  
  CDO72804.1   5 DNSPTLVIIFGWLGAKRPTIQKYSDAYRRL 34 
                 5556678899*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1934.33
//
Query:       CDO72805.1  [L=772]
Description: hypothetical protein BN946_scf184994.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   14.9   0.0       0.24   11.9   0.0    2.4  2  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.083   1.5e+03      47      66 ..     158     177 ..     156     179 .. 0.91
   2 ?   11.9   0.0   1.4e-05      0.24      13      53 ..     179     219 ..     176     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.083
      TPR_19  47 lLdalpeedpddaryasLlA 66 
                 +Ld++ ee p + ry++L A
  CDO72805.1 158 VLDEIYEEVPPSHRYHTLVA 177
                 7999**************98 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.4e-05
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                 +l+++l+e p+++ ++  L e++l+ g ++eA+ +L+al +
  CDO72805.1 179 ALTYILDECPHDPTLLNSLLEVCLSHGLVTEARTALSALFN 219
                 6899********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 5987.97
//
Query:       CDO72806.1  [L=868]
Description: hypothetical protein BN946_scf184994.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.8e-101  335.5   0.0   1.5e-100  335.0   0.0    1.3  1  MCM              MCM P-loop domain
    4.5e-32  111.4  35.1    4.5e-32  111.4  35.1    2.6  3  MCM2_N           Mini-chromosome maintenance protein 2
    1.3e-24   86.4   0.6    4.9e-24   84.6   0.3    2.2  2  MCM_lid          MCM AAA-lid domain
    6.3e-23   81.0   0.1    1.1e-15   57.6   0.0    2.4  2  MCM_OB           MCM OB domain
    6.7e-12   45.9   0.0    2.4e-11   44.1   0.0    2.0  1  MCM_N            MCM N-terminal domain
    1.2e-07   31.3   0.0    3.5e-06   26.6   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.3e-06   27.2   0.1    1.1e-05   25.5   0.0    2.0  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00036   20.4   0.1      0.014   15.2   0.0    2.7  2  AAA_3            ATPase family associated with various cellul
     0.0021   17.8   0.1      0.017   14.8   0.1    2.1  1  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
       0.11   13.0   0.1        1.3    9.4   0.1    2.7  2  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.0   0.0  8.1e-104  1.5e-100       1     224 []     428     651 ..     428     651 .. 0.99

  Alignments for each domain:
  == domain 1  score: 335.0 bits;  conditional E-value: 8.1e-104
                 HHHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSS CS
         MCM   1 eveeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLta 99 
                 +++ei+ +a++++i ++++ksiapsiyghed+k+ai+l+lfggv+k  + k+++rgdinvll+gdpgtaKsq+Lkyvek+a+r+v+++g+g+sa+gLta
  CDO72806.1 428 DEKEIRAMARDDRIRKRIIKSIAPSIYGHEDIKTAIALSLFGGVSKDINRKHRIRGDINVLLLGDPGTAKSQFLKYVEKTAHRSVFATGQGASAVGLTA 526
                 5799*********************************************************************************************** PP

                 EEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHS CS
         MCM 100 avvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrF 198
                 +v++d+ t+e++le+GalvladkG c+iDefdkm+++dr+++hEamEqq+isi+KaGiv+tL+ar++++aAanp+ gry+++ ++++n++l++++LsrF
  CDO72806.1 527 SVRKDPITREWTLEGGALVLADKGTCLIDEFDKMNDADRTSIHEAMEQQSISISKAGIVTTLQARCAIIAAANPIRGRYNPTIPFQQNVELTEPILSRF 625
                 *************************************************************************************************** PP

                 SEEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 199 DlifvllDkvdeekDeelaehivslh 224
                 D+++v++D+vd  +De la+++v +h
  CDO72806.1 626 DVLCVVKDTVDPVQDELLARFVVGSH 651
                 **********************9876 PP

>> MCM2_N  Mini-chromosome maintenance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4  35.1   2.5e-35   4.5e-32       7     153 .]      51     198 ..      45     198 .. 0.85
   2 ?   -2.7   0.2       3.7   6.6e+03      42      66 ..     414     440 ..     405     446 .. 0.49
   3 ?   -0.6   0.0      0.82   1.5e+03      57      76 ..     556     575 ..     553     587 .. 0.84

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 2.5e-35
      MCM2_N   7 veeed.iadldevaaeeeedgeDLfndnledDyreneeqDrYdlddidDendldeldaaeRraieaeLdrRDrelk.....araarrsklaafLqddd. 98 
                 ++e+d ++d d+ +ae+ edgeDLf++++edDy  ne +DrY+++didDe+++++l+aa+Rra+ea+++rRDr ++      raa+rs+++ fLq+dd 
  CDO72806.1  51 LDERDaVRDVDD-DAEDAEDGEDLFAEDMEDDYATNEILDRYSDRDIDDEHEYEDLTAAQRRAAEANMARRDRLERggrrgVRAAARSRMPDFLQSDDm 148
                 555441445553.6779**********************************************************999998789**************5 PP

      MCM2_N  99 dedelddelglpiqkrRrRreydedededldeadideleeelsleslaDvkadsi 153
                 ++d++d+ l l   krR+Rr+y  de +dld+  ++  ++el+le+l+D+ka+si
  CDO72806.1 149 EDDDVDGGL-LAGMKRRTRRQY--DERKDLDD--LEGVDDELPLEQLSDIKAKSI 198
                 555655555.555699999999..55566665..9******************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
      MCM2_N  42 eeqDrYdl..ddidDendldeldaaeR 66 
                 +++D++       +De+++  +   +R
  CDO72806.1 414 KKEDQFAAfrLTEEDEKEIRAMARDDR 440
                 444444432222345555555544444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.82
      MCM2_N  57 dldeldaaeRraieaeLdrR 76 
                 ++d+++ a+R  i ++++++
  CDO72806.1 556 EFDKMNDADRTSIHEAMEQQ 575
                 799**********9999886 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.3   2.7e-27   4.9e-24       1      83 [.     679     759 ..     679     763 .. 0.94
   2 ?   -3.9   0.0        10   1.8e+04       3      13 ..     779     789 ..     779     804 .. 0.83

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 2.7e-27
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLseAlAklrlsevvteedveeairll 83 
                 +llrkYi ya+ek++Pkl + +++kls+ + +lR+e+   ++ s+pit R+Les+iR++eA+Ak+ l+e+v+++d++ ai+++
  CDO72806.1 679 DLLRKYIMYAKEKVRPKLYDLDQDKLSKLFSDLRRESL--ATGSYPITIRHLESMIRMAEASAKMALREYVRADDIDLAISVT 759
                 58*********************************885..489*************************************997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 10
                 HHHHHHHHHHT CS
     MCM_lid   3 lrkYiayarek 13 
                 +rkY++ ar +
  CDO72806.1 779 FRKYLTQARDH 789
                 68999999965 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   2.9e-08   5.2e-05       2      32 ..     310     340 ..     309     341 .. 0.94
   2 !   57.6   0.0     6e-19   1.1e-15      74     124 ..     338     388 ..     337     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.9e-08
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEE CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkk 32 
                 lRdlr++h+++lv+v+G+vtr++ v+p+lk+
  CDO72806.1 310 LRDLRRSHLNTLVRVTGVVTRRTGVFPQLKN 340
                 8***************************985 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 6e-19
                 EEEEEEEEEE-------------EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  74 fvdfqklklQEspeevpaGelPrslevileddlvdkvkPGdrvevtGiyra 124
                 ++++q+l+lQEsp++vp+G+lPr+ evil  dl+dk+kPG+++e+tGiyr+
  CDO72806.1 338 LKNYQRLTLQESPGSVPPGRLPRHREVILLWDLIDKAKPGEEIEITGIYRN 388
                 579**********************************************97 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.4e-14   2.4e-11       2     102 ..     213     301 ..     212     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.4e-14
       MCM_N   2 ekFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykddakefpaeltrrfqv 100
                 + F++FL ++     de+g ++Y ++++++ e++ ++Lev++ +La  ++ La  +++ p  +l +++e++   +  ++p+y++         + +++v
  CDO72806.1 213 RHFRQFLMTY----VDEHGASVYGQRIRHLGENNAESLEVSYLHLALSKPILAYFLTNCPSAMLAIFDEVALSAILLYYPAYERI--------HSEVHV 299
                 78********....78899*************************************************************99987........666666 PP

       MCM_N 101 rf 102
                 r+
  CDO72806.1 300 RI 301
                 65 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.062   1.1e+02      21      41 ..     483     503 ..     479     531 .. 0.88
   2 !   26.6   0.0   1.9e-09   3.5e-06      98     161 ..     540     603 ..     519     636 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.062
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakr 41 
                   G  n+ll+G pG+ K+   k 
    CDO72806.1 483 GDINVLLLGDPGTAKSQFLKY 503
                   8889***********987665 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.9e-09
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpc 161
                   + G++ la +G  ++DE+ +++     ++ e +e+++++is+a   ++  ar+ ++aa+Np + 
    CDO72806.1 540 EGGALVLADKGTCLIDEFDKMNDADRTSIHEAMEQQSISISKAGIVTTLQARCAIIAAANPIRG 603
                   67999********************************************************875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.3   7.6e+03      32      64 ..      78     110 ..      72     126 .. 0.70
   2 !   25.5   0.0   5.9e-09   1.1e-05       1     125 [.     486     606 ..     486     625 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
                 --TT--HHHHH--B--.........-------- CS
       AAA_5  32 ltrdtteedlkgrreikngttslvdsplvraar 64 
                 + +d+ +++++ r++ ++ + +++   l+ a r
  CDO72806.1  78 MEDDYATNEILDRYSDRDIDDEHEYEDLTAAQR 110
                 677888889999998777778888888885544 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 5.9e-09
                 EEEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.......nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 +vlL+G+pGt+Ks++ +++ +         ++    v lt++ +++ ++ ++ +       + ++lv     + ++++DE+++++++   s +  +e++
  CDO72806.1 486 NVLLLGDPGTAKSQFLKYVEKTAhrsvfatGQGASAVGLTASVRKDPITREWTL-------EGGALV--LADKGTCLIDEFDKMNDADRTSIHEAMEQQ 575
                 69*************999998886667777888888899999999999999996.......889999..778999************************ PP

                 EEE..-SSSEEE---......-EEEEEESS--.... CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpld...r 125
                  +++ + g ++  ++        +ia+anp +   +
  CDO72806.1 576 SISISKAGIVTTLQAR-----CAIIAAANPIRgryN 606
                 ***9999988888775.....9*******9984440 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11   1.9e+02      52      95 ..     392     436 ..     377     448 .. 0.74
   2 !   15.2   0.0   7.9e-06     0.014       2     114 ..     487     602 ..     486     614 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.11
       AAA_3  52 kefefkkG.pvfanllladeinrappktqsalleameerqvtveg 95 
                   ++ k+G pvf+ ++ a+ +n+ + +  +  l   +e+++ +  
  CDO72806.1 392 AALNSKNGfPVFSTVIEANHVNKKEDQFAAFRLTEEDEKEIRAMA 436
                 5566677769*************9999888888888888776655 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 7.9e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdi..lGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtveg 95 
                 vll g PG+ak ++ k + k+     +r  f++    s +  + +   +  ++e++++ G+++ a+    l de ++ +   ++++ eame++ +++++
  CDO72806.1 487 VLLLGDPGTAKSQFLKYVEKTA----HRSVFATGQGASAVglTASVRKDPITREWTLEGGALVlADkgTCLIDEFDKMNDADRTSIHEAMEQQSISISK 581
                 7888889999988877666544....34444443333332003333334446999999998763333389***********************999876 PP

       AAA_3  96 e..thklpepflvlatqnPie 114
                 +   ++l+    ++a+ nPi 
  CDO72806.1 582 AgiVTTLQARCAIIAAANPIR 602
                 522689*************96 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   9.5e-06     0.017      19     142 ..     481     599 ..     471     605 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.5e-06
                      CTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHH CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplelQek 112
                      ++ d++vl++G+ Gt K+ + + + ++ +   +++ a   +a +  l +s    ++k   t   + + G++  ad+Gt ++De  +++ +  + 
       CDO72806.1 481 IRGDINVLLLGDPGTAKSQFLKYVEKTAH---RSVFATGQGASAVGLTAS----VRKDPITREWTLEGGALVLADKGTCLIDEFDKMNDADRTS 567
                      56789999*******99999888766555...556778888889999998....89999999999999************************** PP

                      HHHHHHHSE..EESBTSSSEEE--EEEEEEES CS
  Sigma54_activat 113 Llrvlqege..vervGsskeikvdvriiaatn 142
                      + +++++++  +++ G  ++ ++ + iiaa+n
       CDO72806.1 568 IHEAMEQQSisISKAGIVTTLQARCAIIAAAN 599
                      *****9997225799**************987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00074       1.3       1     111 [.     487     600 ..     487     618 .. 0.67
   2 ?   -0.2   0.0      0.68   1.2e+03       9      70 ..     667     731 ..     664     748 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00074
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEE.ETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgveflei.sgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 vll G pGt K+ + k v k+++++++ + +g++ +    g +++  ++ +++  + +       ++   +iDE+d+++ ++ +++  e+++ ++  ++
  CDO72806.1 487 VLLLGDPGTAKSQFLKYVEKTAHRSVFATgQGASAV----GLTASVRKDPITREWTLEggalvlaDKGTCLIDEFDKMNDAD-RTSIHEAMEQQSISIS 580
                 79********************97765551555555....4444444444443222222347787668999*******9888.4444455555555555 PP

                 HHHHTTTSSSTEEEEEEESS CS
         AAA  92 eldgvkkkeskvivigatnr 111
                 +   v++ ++++ +i+a+n 
  CDO72806.1 581 KAGIVTTLQARCAIIAAANP 600
                 55555555888888888886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.68
                 SSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGH CS
         AAA   9 tGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidal 70 
                 +G Tl a  + ++l ++++     +++ k+    ++k+++lf+++++++   +   + i  ++++
  CDO72806.1 667 VGTTLDADIIPQDLLRKYIMYAKEKVRPKLYDLDQDKLSKLFSDLRRESlatGSYPITIRHLESM 731
                 7888889999999999999999999999999999********99998876643345555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6109.63
//
Query:       CDO72807.1  [L=371]
Description: hypothetical protein BN946_scf184994.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-14   53.0   0.4    3.3e-14   53.0   0.4    2.2  2  HMG_box    HMG (high mobility group) box
    2.9e-05   24.6   0.3    2.9e-05   24.6   0.3    1.9  2  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.4   3.7e-18   3.3e-14       1      68 [.      12      82 ..      12      83 .. 0.95
   2 ?   -0.9   2.1      0.26   2.3e+03      45      66 ..      90     111 ..      86     114 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 3.7e-18
                --SS--HHHHHHHHHHHHHHHHSTTS-...HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  1 pkRplsafflfskeqraklkaenPelk...naeiskklgekWkalseeeKkkYeekaekekaryekekpey 68
                p+Rp++a++l++ ++ ++l +  P       aeis++lg++W  ++++++  Ye+ka+++k+ +e+++p+y
  CDO72807.1 12 PPRPPNAWMLYRADKSKELTQGRPAGMvllQAEISRILGQRWALETPSVRDFYEQKAKEAKEAHERMYPDY 82
                89**********************85546689**************************************9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  45 eeKkkYeekaekekaryekekp 66 
                  eK+k +++ +++k+r ++e++
  CDO72807.1  90 VEKQKRRAEVKAAKERARAEIK 111
                 5788888888888888888776 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.3   3.2e-09   2.9e-05       3      69 ..      11      79 ..       9      83 .. 0.90
   2 ?   -3.3   1.9       1.6   1.4e+04      50      69 ..      91     110 ..      87     114 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.2e-09
                -.-SS--HHHHHHHTTHHHHHHHT--...-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2  3 kpkaarnAYalfvqemipelkrkGnp...viglaevsklcsekWkalseeeKekYeekAkedkkrydrea 69
                +p +++nA++l+  ++ +el +  +p   v   ae+s+ ++++W++   + +  Ye+kAke k++ +r  
  CDO72807.1 11 QPPRPPNAWMLYRADKSKELTQG-RPagmVLLQAEISRILGQRWALETPSVRDFYEQKAKEAKEAHERMY 79
                67899***************876.9988788889******************************988765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2  50 eKekYeekAkedkkrydrea 69 
                 eK+k   + k+ k+r+++e 
  CDO72807.1  91 EKQKRRAEVKAAKERARAEI 110
                 67777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2705.05
//
Query:       CDO72808.1  [L=1143]
Description: hypothetical protein BN946_scf184994.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-35  123.1   9.0    2.5e-35  122.5   9.0    1.2  1  ABC_membrane  ABC transporter transmembrane region
    1.6e-33  116.1   0.0    3.2e-33  115.2   0.0    1.5  1  ABC_tran      ABC transporter
    3.8e-05   23.2   0.1    0.00064   19.2   0.1    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0062   16.3   0.0      0.011   15.4   0.0    1.3  1  AAA_15        AAA ATPase domain
     0.0064   16.9   1.4      0.014   15.8   0.3    2.2  2  AAA_16        AAA ATPase domain
     0.0068   16.1   0.1      0.016   14.9   0.1    1.6  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.077   13.3   0.0    2.1  2  AAA_22        AAA domain
      0.015   15.2   0.1      0.038   13.9   0.0    1.6  2  RsgA_GTPase   RsgA GTPase
      0.019   14.8   0.1      0.083   12.7   0.1    2.0  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.068   12.5   0.0       0.14   11.4   0.0    1.4  1  Zeta_toxin    Zeta toxin
      0.077   13.4   0.1       0.98    9.9   0.1    2.2  1  AAA           ATPase family associated with various cellular 
       0.14   12.0   0.0       0.28   11.1   0.0    1.4  1  APS_kinase    Adenylylsulphate kinase
        2.1    8.9   8.2      0.084   13.3   0.9    2.5  2  DUF4713       Domain of unknown function (DUF4713)


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   9.0   1.8e-38   2.5e-35       2     274 .]     300     571 ..     299     571 .. 0.92

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 1.8e-38
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSC CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfi..lallqsyllnvtgerlskrlrrklfkkilrqpmsffdtns 96 
                   +l++l  i++ v+++l+plv+++++ ++ + g+  +     y+ ++++l ++q+   l+ l+ +l++ ++++  +++ +  f+++l+++ +f+ +++
    CDO72808.1 300 FLCVLIMIVGRVVNFLVPLVFAQLVRVFEE-GTRVS--PWPYLGAYVGLRFLQASggLNALRDTLWIPVMQYSDREMSQLSFDHLLQLSFAFHARRK 393
                   67889999********************99.77777..6899999999999876522788************************************* PP

                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvggliv.mfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   +Ge+l  l + ++ ++  + +  + ++  ++ +v++l++ ++y+ w l++v+++++  ++  s+v++++ +kl+++++++   +  + ++ l +++t
    CDO72808.1 394 TGEVLRILDRGAA-INHTFETLAFSILPTFFDIVIALVFfVIYFEWTLAVVIFFVMAAYVAASVVLTRWRTKLRRQMNDRDVIIRGIHTDCLLNYET 489
                   ********99999.77777777777777777666666650566****************************************************** PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   Vk+f++e+ + e++ +a++++++  +k+ ++ +ll+ +++++++l  ++  ++ +  v +g+ ++ ++v+f++++a+l g+l
    CDO72808.1 490 VKYFNGEQHEGERYREAIRQYQNLEYKVMVSLNLLNLVQNFIITLGLLVGSMIVAMRVVRGQSQPHQFVFFITYLAQLYGPL 571
                   ******************************************************************************9986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   2.3e-36   3.2e-33       1     137 []     633     784 ..     633     784 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 2.3e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SE..EEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpte..Geilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81 
                 l+ vs+k+ +g+ va+vGe+GaGKSt+l+ll++ ++ +e  G+il+dg+d+++ + +slr+ igv+pq+p lf+ + ++ n                ++
  CDO72808.1 633 LEGVSFKVPKGSAVALVGESGAGKSTILRLLYRFYDLKEgdGRILIDGQDIRDVTQNSLRRAIGVVPQDPVLFNAS-IGYNigygkfgatqeeivaaAK 730
                 678********************************99662268*********************************.99999******88888877766 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++i++ + ++ + +  +t+v++++  LSgG+kqrva+ar+llk+p++lllDE+t+
  CDO72808.1 731 AAQIHDRIMSFPDGY--ETKVGERGIRLSGGEKQRVAIARTLLKDPPILLLDEATS 784
                 777777777777666..9999*********************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   4.7e-07   0.00064     135     209 ..     700     824 ..     625     832 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.7e-07
                 T......................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHH CS
                 x......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkv 179
                 +                                                       LSgGek+ va+a        k  p+ llDe  +aLD +  k +
  CDO72808.1 700 QdpvlfnasigynigygkfgatqeeivaaakaaqihdrimsfpdgyetkvgergiRLSGGEKQRVAIART----LLKDPPILLLDEATSALDTSTEKDI 794
                 45555555555555555555555555555555555555777777777777777778*******9998755....68999******************** PP

                 HHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 180 aellkeksknaQfivislreemlekadklv 209
                  + l++  +    + i++r  +++ ad ++
  CDO72808.1 795 QKALQNLMQGRSSLSIAHRLSTIASADLII 824
                 ********9999*******99999998766 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.2e-06     0.011      25      72 ..     645     690 ..     634     743 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.2e-06
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnkekkn.kkvikiekedleifenis 72 
                    l+G+ ++GKS+il++l+ F + k   + +  i i+ +d+++  ++s
  CDO72808.1 645 AVALVGESGAGKSTILRLLYRFYDLK---EgDGRILIDGQDIRDVTQNS 690
                 578*********************88...33567888888888776655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3     1e-05     0.014      24      58 ..     643     680 ..     630     814 .. 0.70
   2 ?   -3.3   0.0       7.4     1e+04      69      89 ..     884     905 ..     840     951 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...ggiflrg 58 
                 +++v l+GesG GKs+++r l+r +  +   g i++ g
  CDO72808.1 643 GSAVALVGESGAGKSTILRLLYRFYDLKegdGRILIDG 680
                 389******************99555443333333444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.4
      AAA_16  69 ysalaqalareellrqllde....a 89 
                 ++a+++ l   e++ q+++e    +
  CDO72808.1 884 RAAIVEDL---EVIPQVGTEevaqD 905
                 33344444...55555555522221 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.2e-05     0.016      15      39 ..     636     660 ..     631     663 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
      AAA_29  15 htieidlkg.atlltGpsGsGKSTll 39 
                  ++++  kg a+ l+G+sG+GKST+l
  CDO72808.1 636 VSFKVP-KGsAVALVGESGAGKSTIL 660
                 566665.5669*************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.6e-05     0.077       6      31 ..     644     669 ..     641     698 .. 0.83
   2 ?   -0.6   0.0       1.1   1.5e+03      91     112 ..     770     801 ..     751     817 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.6e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqlde 31 
                 + ++++GesG+GK+t lr l + +d 
  CDO72808.1 644 SAVALVGESGAGKSTILRLLYRFYDL 669
                 6789***************9998864 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
      AAA_22  91 v...ielliiDEaqh.lr.s.....eealeeL 112
                     +++l++DEa   l+ s     ++al++L
  CDO72808.1 770 LlkdPPILLLDEATSaLDtStekdiQKALQNL 801
                 1345679999**99988773444455555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       9.9   1.4e+04      63      81 ..     501     519 ..     497     522 .. 0.80
   2 ?   13.9   0.0   2.8e-05     0.038      90     121 ..     633     665 ..     604     676 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 9.9
                  HHHHHHHHHHHHTTSEEEE CS
  RsgA_GTPase  63 eeleelkeelealgyevll 81 
                  e+++e   ++++l+y+v++
   CDO72808.1 501 ERYREAIRQYQNLEYKVMV 519
                  568899999******9986 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.8e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  le ++ ++ + + ++lvG+SG+GKSt++  l  
   CDO72808.1 633 LEGVSFKVPKgSAVALVGESGAGKSTILRLLYR 665
                  555555555548999*************98865 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     6e-05     0.083       3      26 ..     647     679 ..     646     719 .. 0.74
   2 ?   -2.1   0.0       1.9   2.6e+03     246     271 ..     765     787 ..     741     803 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.........d 26 
                 +l+G  g+GKS++L++l+ + +l         d
  CDO72808.1 647 ALVGESGAGKSTILRLLYRFYDLkegdgriliD 679
                 79****************998765544332221 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
      AAA_21 246 alltallralkkgsllliDEpEngLH 271
                 a++  ll ++   ++ll+DE  + L+
  CDO72808.1 765 AIARTLLKDP---PILLLDEATSALD 787
                 4444444444...9******777766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.14      17      56 ..     644     685 ..     633     692 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
  Zeta_toxin  17 klillgGqpGAGKselaellkdele..rqgnvvrldpDdlRe 56 
                  ++ l+G +GAGKs++++ll +  +  ++++ + +d+ d+R 
  CDO72808.1 644 SAVALVGESGAGKSTILRLLYRFYDlkEGDGRILIDGQDIRD 685
                 5899****************9977776999999999999996 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00071      0.98       3     100 ..     648     811 ..     646     828 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00071
                 EESSTTSSHHHHHHHHHHHHTHE....EEEEETTTCSSS............................................................ CS
         AAA   3 lyGppGtGKTllakavakelgve....fleisgsellsk............................................................ 37 
                 l+G  G GK+++ + + +  + +     + i+g ++++                                                             
  CDO72808.1 648 LVGESGAGKSTILRLLYRFYDLKegdgRILIDGQDIRDVtqnslrraigvvpqdpvlfnasigynigygkfgatqeeivaaakaaqihdrimsfpdgye 746
                 566666666666666666653222222344444444433444444445555555555555555555555555555555555555555556666666665 PP

                 .......STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS..S CS
         AAA  38 .......yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk..e 100
                        +   + +k r  +  a++   +p il++DE+ +   ++       e++++++L + ++g ++    
  CDO72808.1 747 tkvgergIRLSGGEKQRVAI--ARTLLkDPPILLLDEATSALDTS------TEKDIQKALQNLMQGRSSLsiA 811
                 54444432222223333333..23333569***********9999......999***********99986553 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.28       2      44 ..     643     686 ..     642     700 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                 -EEEEEESSTTSSHHHHHHHHHHHHH.HTT--EEEEEHHHHTTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLv.ekgisvylLdGdnvRhg 44 
                 g  v l G sg+GKsti + l +    ++g   +l+dG+ +R  
  CDO72808.1 643 GSAVALVGESGAGKSTILRLLYRFYDlKEGDGRILIDGQDIRDV 686
                 678999***************997752667899999*****975 PP

>> DUF4713  Domain of unknown function (DUF4713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.2       8.8   1.2e+04      26      43 ..     297     315 ..     288     322 .. 0.58
   2 ?   13.3   0.9   6.1e-05     0.084      21      52 ..     408     439 ..     395     441 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.8
     DUF4713  26 iaaFvvlll.FigtVllLl 43 
                  +aF  +l+  +g V+  l
  CDO72808.1 297 FLAFLCVLImIVGRVVNFL 315
                 5677544440445555444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.1e-05
     DUF4713  21 qspwdiaaFvvlllFigtVllLlllaclyccc 52 
                 +++ +++aF++l +F+  V+ L+  ++ ++++
  CDO72808.1 408 NHTFETLAFSILPTFFDIVIALVFFVIYFEWT 439
                 7999***********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.48
# Mc/sec: 7221.93
//
Query:       CDO72809.1  [L=122]
Description: hypothetical protein BN946_scf184994.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-10   39.5   0.0    4.7e-10   39.2   0.0    1.2  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.6e-14   4.7e-10      31      70 .]       1      41 [.       1      41 [. 0.96

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.6e-14
                EEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1 31 vrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70
                +rd  tg+s+gf+fV+F s+ +A+ A+ +ln+++l+gr++k
  CDO72809.1  1 MRDrDTGRSRGFGFVTFSSSGEAQTAITSLNEQELDGRRIK 41
                67889*********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 899.25
//
Query:       CDO72810.1  [L=624]
Description: hypothetical protein BN946_scf184994.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.54
# Mc/sec: 3476.57
//
Query:       CDO72811.1  [L=842]
Description: hypothetical protein BN946_scf184994.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5896.39
//
Query:       CDO72812.1  [L=1019]
Description: hypothetical protein BN946_scf184994.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-38  131.0   0.0    8.7e-38  130.3   0.0    1.2  1  Plavaka   Plavaka transposase
      5e-15   55.2   0.0    6.8e-09   35.5   0.0    2.5  2  Gelsolin  Gelsolin repeat


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.0   9.7e-42   8.7e-38     112     321 ..     180     397 ..     160     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 9.7e-42
     Plavaka 112 pvilssDKTtlsvftgnkeayPvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkeagkkgvvmtcadgh 210
                   il sDKT+ls f g+++ yP+   ++n+p+++r++    +  ++++Lp+ + ++ + +++f    kr ++H+c+ +ile L ++gk g+  +c+d  
  CDO72812.1 180 CFILYSDKTHLSSF-GSQKGYPIMARLANLPSAIRNSNGFGGGQVVGFLPVVEDENEEGKPSFTA-HKRVVWHECFWIILEFLAKVGKLGELYKCGDDI 276
                 469***********.**************************************999989999999.********************************* PP

     Plavaka 211 vrrvipilaayiaDypEqvlvaci..vqg..wCpkctakkkelgdl...eeselrtreetlelleeaade....lkklwkeyglkgviepFwedlprad 298
                 +r  +pi+ +  aDy+Eq+++a i   qg   Cp c ++++e   l     ++lr+ e+ ++l++e+a++     ++ ++  gl+++++ Fw+  p++d
  CDO72812.1 277 LRLLFPIILILAADYEEQAVMALIrgLQGvaPCPVCLVPAEEQSVLgmePLYPLRDAETSQRLVTETANTtnvaREAVLQPLGLRPIQNVFWK-IPYCD 374
                 ***********************955344448*******99976533226689**********999987678877779999***********6.9**** PP

     Plavaka 299 ihelltpDlLHqlikgvfkdHlv 321
                 ++++l+ D LH  + g+f +Hl+
  CDO72812.1 375 VYSALSFDRLHAYHSGLFRHHLF 397
                 *********************97 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   7.6e-13   6.8e-09      28      75 ..     776     825 ..     755     826 .. 0.92
   2 !   17.0   0.0   4.7e-07    0.0042       7      71 ..     877     940 ..     874     944 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 7.6e-13
                 EEEEEEHTTSHHHHHHHHHHHHHHHH..HCTTTTTSEEEEEETTHHHHHH CS
    Gelsolin  28 tiflWiGkessqeeknfaadlaaeld..seerfplpeliredqgkeparF 75 
                 ++++W+G+e sq++++ aa+ ++eld  s++++++p+++ e+qg +++rF
  CDO72812.1 776 DLHFWLGAETSQDKAGTAAYKTVELDdpSKDLGGKPVQYCEVQGYKSPRF 825
                 89***********************************************9 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.7e-07
                 EBSSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHH CS
    Gelsolin   7 vvklsssslesgdcyLLdngftiflWiGkessqeeknfaadlaaeldseerfplpeliredqgke 71 
                 +v+++ ss+  gd+y+Ld+g  +++++ ++s    +++aa++ + l  +er + +e  + d g+ 
  CDO72812.1 877 EVPANRSSVAQGDVYVLDMGGRVWQFNMRGSKGKVRLKAAEFVQSLV-SEREGQCEPTVYDGGGD 940
                 799*******************************************9.99999998888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6998.79
//
Query:       CDO72813.1  [L=295]
Description: hypothetical protein BN946_scf184994.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-07   29.4   0.0    8.3e-07   28.9   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   4.6e-11   8.3e-07     193     241 ..       1      51 [.       1      52 [. 0.90

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.6e-11
       RVT_2 193 lkdlgkvskfLGieiaqeag..giklsladyiakvvkkfeltdaktvatPl 241
                 + dlg v++fLG+ i ++     i++ +++yi++++k+f+++d+k+  tPl
  CDO72813.1   1 MTDLGAVKRFLGLRISRDRTirRIEIDQEEYIQSIIKHFDMADCKPARTPL 51 
                 89**************96651168899**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2066.70
//
Query:       CDO72814.1  [L=283]
Description: hypothetical protein BN946_scf184994.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0079   15.1   0.5      0.015   14.2   0.5    1.4  1  MscS_TM          Mechanosensitive ion channel inner membrane 
  ------ inclusion threshold ------
        2.8    8.0   9.3        5.1    7.2   9.3    1.4  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
        9.8    6.5  15.0        5.2    7.3   7.6    2.5  2  DUF4611          Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.5   2.5e-06     0.015     260     325 ..      23     105 ..      18     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-06
     MscS_TM 260 erakekRaaalaqrakeeeeeeekkesae.veepeldleaisaQ................slrLlrlllllallvglylvWsd 325
                 e+a  kR++++a+r++eee +++kk +a+  ++++   e++++                   +L+++l l ++l ++  vW++
  CDO72814.1  23 EEAEHKRQQEEAARKREEERAQAKKRKAPeSDDESDSGEEVEQElgpvvllvvgvdpevlLQSLVDSLGLSVALRMISGVWQE 105
                 68999*************9999999888844444445677777799999**********9999******************86 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.3   0.00086       5.1      83     144 ..       6      67 ..       1      74 [. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00086
     UPF0242  83 glktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqL 144
                  +k+ e++le+l+++  e +e+  ++ee+ ++++ee +q ++++   + d +++  e+e++L
  CDO72814.1   6 AVKQLEQQLEQLKKKVPEEAEHKRQQEEAARKREEERAQAKKRKAPESDDESDSGEEVEQEL 67 
                 68999***************************************99999*999999999998 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.6   0.00088       5.2      24      79 ..       3      64 ..       1      68 [. 0.80
   2 ?    3.0   0.7     0.019   1.2e+02      27      72 ..     215     269 ..     202     277 .. 0.39

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00088
     DUF4611 24 eadrlksllsgvaqlreevsellstlveqe......aqddvaaagdeeeegededdeeeekn 79
                 ad  k+l   ++ql+++v+e  ++  +qe      ++++++a++ ++ e++de+d+ ee +
  CDO72814.1  3 AADAVKQLEQQLEQLKKKVPEEAEHKRQQEeaarkrEEERAQAKKRKAPESDDESDSGEEVE 64
                589999999****************9999988776555556666667778889988888765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.019
     DUF4611  27 rlksllsgva.qlreevse...llstlveqe....aqddvaaagde.eeegeded 72 
                  l+ + +gv   +r+e s+   +  ++v+ e     +  + ++g++ + e ede 
  CDO72814.1 215 ELRNIRAGVRsSVRTELSKmeaVVREVVRDEvakaLAAYFGNEGSSpNAEKEDEA 269
                 5555555553135555543111233444444311111112222222022222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2513  (0.140164); expected 358.6 (0.02)
Passed bias filter:                     1388  (0.0774165); expected 358.6 (0.02)
Passed Vit filter:                       264  (0.0147247); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 1737.48
//
Query:       CDO72815.1  [L=198]
Description: hypothetical protein BN946_scf184994.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-27   95.1   0.0    5.9e-27   94.6   0.0    1.2  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   3.3e-31   5.9e-27      66     222 .]       3     125 ..       1     125 [. 0.98

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 3.3e-31
                 TS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEE CS
       RVT_1  66 kkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtll 164
                 +ka++++k+Dl+  ++ v+ +  ++ +taf+++                         +g++e+ ++p+G+ ++P+ f++f+n+++ +l      v ++
  CDO72815.1   3 RKARIYTKIDLRYVYNLVRIAPGDEWKTAFRTR-------------------------YGSFEWLVMPFGLSNAPAAFQRFVNDIFSDLLD----VCVV 72 
                 6899*****************************.........................9*******************************8....9*** PP

                 ECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 165 rYaDDililskskeelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvtl 222
                  Y DDili+s+++e++ e++++v ++l++++l   ++K+++      +++v+yLG++l
  CDO72815.1  73 IYLDDILIYSDTPEKHWEHVKEVLRRLQKNKLYARADKCEFH-----TTSVEYLGYIL 125
                 ******************************************.....9*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1468.70
//
Query:       CDO72816.1  [L=1492]
Description: hypothetical protein BN946_scf185002.g1 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   35.4   7.7      0.072   14.0   0.1    6.2  6  WD40      WD domain, G-beta repeat
    7.5e-08   32.3   0.0    7.5e-08   32.3   0.0    3.1  2  SRA1      Steroid receptor RNA activator (SRA1)
     0.0084   16.2   0.0      0.019   15.0   0.0    1.5  1  Prp18     Prp18 domain
  ------ inclusion threshold ------
      0.084   13.5   0.0       0.23   12.0   0.0    1.7  1  Sec16     Vesicle coat trafficking protein Sec16 mid-region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.16   7.1e+02      17      38 .]      13      46 ..       6      46 .. 0.69
   2 ?   -3.2   0.0         4   1.8e+04      16      38 .]      91     105 ..      84     105 .. 0.83
   3 !   11.6   0.0   9.1e-05      0.41       8      38 .]     124     156 ..     117     156 .. 0.84
   4 ?    1.2   0.0      0.18     8e+02      12      38 .]     175     202 ..     160     202 .. 0.72
   5 !    5.6   0.2    0.0074        33      15      38 .]     243     270 ..     238     270 .. 0.84
   6 !   14.0   0.1   1.6e-05     0.072       3      38 .]     277     314 ..     275     314 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.16
                EEETTSSE..EEEEET..........TSEEEEEE CS
        WD40 17 afspdgaw..lasGsd..........DgtvriWd 38
                a+sp+ ++  la+G+           +g + iWd
  CDO72816.1 13 AWSPSPSLplLATGTVagaldesfsnNGQLEIWD 46
                55555555658887544445567777999***98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                 +        +++G+++g + iWd
  CDO72816.1  91 V--------IVAGMENGELDIWD 105
                 4........77899999999998 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 9.1e-05
                 ESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 ++H ++v++l+f+p ++ l+ sG  +g +++Wd
  CDO72816.1 124 KTHtGPVRGLDFNPIQTNLFsSGAVNGEIYVWD 156
                 589888************9835568*******9 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.18
                 SEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  12 svtslafspdgaw.lasGsdDgtvriWd 38 
                  +t+la++++ ++ la++s  g   +Wd
  CDO72816.1 175 EITALAWNHHVQYaLAASSSTGYTVVWD 202
                 39***99888888645444488888887 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.0074
                 EEEEETTSSE.EEEEET...TSEEEEEE CS
        WD40  15 slafspdgaw.lasGsd...DgtvriWd 38 
                 ++a++pd+a  l+++s+    + +++Wd
  CDO72816.1 243 DVAWHPDNATrLVTSSEddaSPVIMVWD 270
                 899*******988887445699999998 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 1.6e-05
                 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 + ++ltGH ++v sl+   +d+++l+s+++D+    W+
  CDO72816.1 277 PEKILTGHeKGVLSLSwCKQDSDLLLSCGKDNRALCWN 314
                 5689***********98888888899*******99997 PP

>> SRA1  Steroid receptor RNA activator (SRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -17.6  17.1         4   1.8e+04      15      15 ..    1203    1203 ..    1170    1247 .. 0.67
   2 !   32.3   0.0   1.7e-11   7.5e-08       3     129 ..    1360    1489 ..    1350    1491 .. 0.75

  Alignments for each domain:
  == domain 1  score: -17.6 bits;  conditional E-value: 4
        SRA1   15 s 15  
                  +
  CDO72816.1 1203 A 1203
                  2 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 1.7e-11
        SRA1    3 ppPssvaapppPsveavklsskee.kslsesese.peledvlsvLnqaLeaCrksvkkqvcddvekrLrlledsWksGkLslpvrkrmevLsqelqs 97  
                  ++P+s++a+ pP+++ ++ + k +  + s++  e   + +++s   + L++     +k+++dd+e+r++ l d  +  +Ls pv +++ +L++ +++
  CDO72816.1 1360 ATPASSTAA-PPQAKVGPPQPKYPpGDRSHIPEElRPVYQIISGQLEQLKQVTPPQQKRLVDDLERRINPLFDALNCETLSKPVCEQLVMLARAMEA 1455
                  445554333.55555555555555333333332303355566665666788888889**************************************** PP

        SRA1   98 krWdaaDdihrsLmv..DhvtevsqWmvGvkrLi 129 
                  +  ++a  ih  L+       ++  Wm G+k+Li
  CDO72816.1 1456 HDRETAMAIHMDLLTrgSLTDDIGLWMSGIKQLI 1489
                  *************983235678***********9 PP

>> Prp18  Prp18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.2e-06     0.019      22     101 ..    1406    1486 ..    1397    1489 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.2e-06
       Prp18   22 ekksvegkkesatlkqtkedlkpLlkklkkkkleedileklveivkalqkreyvkAndaYlkl.aIGnaaWPiGVtmvgih 101 
                  + k+v+  +++  + + ++ ++pL++ l+ ++l++ + e+lv + +a++ ++  +A+ ++++l + G  +  iG  m gi 
  CDO72816.1 1406 QLKQVTPPQQKRLVDDLERRINPLFDALNCETLSKPVCEQLVMLARAMEAHDRETAMAIHMDLlTRGSLTDDIGLWMSGIK 1486
                  45566677889999999********************************************85277999999999999986 PP

>> Sec16  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.2e-05      0.23       5      50 ..     409     468 ..     408     479 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
       Sec16   5 sFGfGGklvtmfPkrkpsls..gssv..............sssksspgevkirslkelvpss 50 
                 sFGfGGklvt+     ps +  ++s               +++k+ ++ ++++++++l++++
  CDO72816.1 409 SFGFGGKLVTVSN--LPSAQgkNQSSvvhirkvvteakivERAKKLQTAIEADNVMDLAQQK 468
                 8**********54..44444222222455555666666666777777788888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.52
# Mc/sec: 8705.67
//
Query:       CDO72817.1  [L=403]
Description: hypothetical protein BN946_scf185002.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-08   34.4   0.0    2.9e-08   33.7   0.0    1.3  1  Lipase_3       Lipase (class 3)
  ------ inclusion threshold ------
        4.3    7.9   9.4       0.21   12.1   2.6    2.3  2  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   3.2e-12   2.9e-08       1      90 [.     104     197 ..     104     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 3.2e-12
                 EEEE----..------------EEE-HHHH-G...TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT CS
    Lipase_3   1 vvafRGte..sakdwltdldfslteakellek...eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlveng 90 
                 vva +Gt+  +  +  td+d+ +t+++  l     +g+ vh+gf +     ++ ++l+  k+l++++   +++ +GHSLGgalA L al +  n 
  CDO72817.1 104 VVAHQGTDptQFLSDETDIDIPMTSLDGSLFPgvpSGVLVHEGFANEHA-LTAASILAATKSLISSKGAKTVITVGHSLGGALAELDALFFTLNL 197
                 678888887667777889999999999887768999***********99.9*****************9999999***********999877665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.8      0.32   2.9e+03      75      87 ..      15      50 ..       6     138 .. 0.54
   2 ?   12.1   2.6   2.4e-05      0.21      54      86 ..     156     190 ..     134     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.32
                   HHHHHHHHHHCC........................ CS
  Abhydrolase_6 75 GGalalaaapla.......................l 87
                   G++lal+aa+++                       +
     CDO72817.1 15 GTLLALRAAASPalrerdgvttltssqlaslapytQ 50
                   566777755555566444333333333333333332 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.4e-05
                    HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6  54 aalldelaa.....gggpvvlvGHSlGGalalaaapla 86 
                    a +l++ ++     g++ v+ vGHSlGGala +    a
     CDO72817.1 156 ASILAATKSlisskGAKTVITVGHSLGGALAEL---DA 190
                    3344444445558888999***********998...66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2746.00
//
Query:       CDO72818.1  [L=314]
Description: hypothetical protein BN946_scf185002.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.08   12.9   0.0       0.15   11.9   0.0    1.4  1  IstB_IS21_ATP  IstB-like ATP binding N-terminal
       0.12   12.7   8.6        1.8    8.9   0.4    3.2  2  Tad            Putative Flp pilus-assembly TadE/G-like


Domain annotation for each model (and alignments):
>> IstB_IS21_ATP  IstB-like ATP binding N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.15      12      23 ..     303     314 .]     299     314 .] 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
  IstB_IS21_ATP  12 SFEERLGLLVDr 23 
                     F++RL LLV+r
     CDO72818.1 303 PFDDRLTLLVER 314
                    7**********9 PP

>> Tad  Putative Flp pilus-assembly TadE/G-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.5    0.0021        19       5      30 ..      52      77 ..      49      77 .. 0.91
   2 ?    8.9   0.4    0.0002       1.8      25      45 ..     276     296 ..     272     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0021
         Tad  5 vlfalallpllllvglavDvgravla 30
                +++a++ll++l+ + +avD++++++a
  CDO72818.1 52 MILAAVLLIILATARFAVDTTNVFVA 77
                499******************99876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0002
         Tad  25 gravlartrlQnAADaAALAa 45 
                 +r+++ r++l +AADa  +A+
  CDO72818.1 276 ARTYRRRAELGSAADASCVAG 296
                 689*************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2208.18
//
Query:       CDO72819.1  [L=111]
Description: hypothetical protein BN946_scf185002.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.35   10.7   2.9       0.55   10.1   2.9    1.3  1  VATC      Vms1-associating treble clef domain


Domain annotation for each model (and alignments):
>> VATC  Vms1-associating treble clef domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.9   3.1e-05      0.55      24      38 ..      96     110 ..      95     111 .] 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.1e-05
        VATC  24 frYCstkClraHRra 38 
                 f+ C  +Clr+HRr+
  CDO72819.1  96 FKVCMPRCLRRHRRR 110
                 666**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 858.87
//
Query:       CDO72820.1  [L=324]
Description: hypothetical protein BN946_scf185002.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-41  140.5   0.0    1.5e-40  139.2   0.0    1.6  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0   8.4e-45   1.5e-40      32     292 ..      63     308 ..      23     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 8.4e-45
                   --EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-....S-EEEEEE-S--TTS-.HHHHHHHH CS
  Aldo_ket_red  32 inffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgt....dyvDllllHrpdpslpsieevldal 124
                   ++++DtA++Y    +e  +Gea+ +s+ +r++v+i+tK+       ++ +  +   +++++slk+Lg      yvD++l+H   ++ p+++e+++al
    CDO72820.1  63 FRHIDTARMY---GNEAQVGEAVRESGIPRDQVFITTKL------ANDEHGYDLALAAVDNSLKTLGFgnvaYYVDYFLIHSAMSDKPRRLETWRAL 150
                   46********...9*************************......99999999999**********86422469*********************** PP

                   HHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS CS
  Aldo_ket_red 125 eelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrder 221
                    e +k+Gk +aiGvSn+ v++le++++ +   ++++q+e  +l   ++++++++c+k+++ + ay pl++G  +     ++ +e+ +++++   +  
    CDO72820.1 151 LEAKKQGKTKAIGVSNYGVKHLEEIREAGLEMPAINQIEVQPL--CQQKEIVDYCRKHDIVVEAYAPLMRGQWD----IPAITETAKKASNV--RAG 239
                   *************************77777779**********..************************87766....44444443333333..345 PP

                   -HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 222 tsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   + + l  +  l     ++++++aq+ +r+ l  +++  ++p++ n+e++ +n+d++++++s+e++a++d l
    CDO72820.1 240 LGCSLVPVLVLTMGLSQYNKTPAQVLVRWSL--QRGFAPLPKSANPERVIANADVFDFEISAEDMARIDVL 308
                   66666666777777778**************..9**********************************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2273.44
//
Query:       CDO72821.1  [L=453]
Description: hypothetical protein BN946_scf185002.g6, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-63  215.1  36.6    7.1e-46  156.9  16.3    3.0  3  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
        2.6    7.9   4.1        5.5    6.9   0.2    2.2  2  GRA6            Granule antigen protein (GRA6)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   6.5   1.5e-20   1.3e-16      43     114 ..      54     125 ..      51     135 .. 0.96
   2 !  156.9  16.3   7.9e-50   7.1e-46     151     369 ..     135     356 ..     130     356 .. 0.95
   3 !    9.2   0.3     5e-05      0.45     398     440 .]     356     399 ..     355     399 .. 0.91

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.5e-20
  Transp_cyt_pur  43 qsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaivwfgvqawiGsealll 114
                     q++ +i++g +i+a +++l+g +Ga+++++fp+l R+sfG + s ++++ r+v+ + w g+qa++Gs++++ 
      CDO72821.1  54 QALPAIALGHVIIATVMVLNGTVGARLHVSFPVLNRSSFGFYCSYFSVISRMVLSMFWLGIQAYTGSQCVYQ 125
                     8899*****************************************************************985 PP

  == domain 2  score: 156.9 bits;  conditional E-value: 7.9e-50
  Transp_cyt_pur 151 ivllgvskirkffviaallvpvaafgfliwalvkaeg.Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlva 241
                      ++++++kir ff ++a++vp+a f++liwa vk+ +  +++ + +kl+ s+   + ls+++++l++++tl++n+pDFtryak++++++ +ql++
      CDO72821.1 135 LMFVSPQKIRWFFLFKAVIVPPAWFAILIWAFVKVPAsKGLFVQHSKLSGSAfsyAWLSGLNSALGIYSTLAVNIPDFTRYAKNERAQY-VQLLV 228
                     67999********************************84566667788766678999*****************************997.79999 PP

  Transp_cyt_pur 242 vpllftlllligilvaaaakaayganawspldilakfdetagvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavia.lvi 335
                     +p +ftl+ +igi+v++a++++yg+  w+pl ++ ++ +  + +++++++ala+lg+nisan+lsa++dl+ l+Pk+ini+rg +i a+++  ++
      CDO72821.1 229 IPAAFTLVGFIGIAVTSAGVVLYGSVLWNPLTLIDHWENRPAAFFAAFTFALATLGTNISANTLSAANDLTVLFPKYINIRRGQVISAIVGpWAF 323
                     ******************************************************************************************85699 PP

  Transp_cyt_pur 336 vpwkllssssklftaflsllavflspvagviiad 369
                     vpw+    +++ f+af+  ++vfl+p+agv++ad
      CDO72821.1 324 VPWEIVTGAQG-FLAFMNGYTVFLGPFAGVMVAD 356
                     ***********.********************98 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 5e-05
  Transp_cyt_pur 398 vNwravaayivGiaaglvgvagsvg.ikvvkgaeklfdlsylvG 440
                     +Nwrav+ ++v++ ++++g+++sv     v ga k+fd ++l G
      CDO72821.1 356 DNWRAVVTMLVAVPPNMPGLISSVNpSVRVGGAVKVFDFAWLFG 399
                     6************************7666889*********976 PP

>> GRA6  Granule antigen protein (GRA6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2   0.00061       5.5      10      40 ..     219     249 ..     212     253 .. 0.83
   2 ?    1.9   0.6     0.021   1.9e+02      13      49 ..     322     361 ..     320     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00061
        GRA6  10 qkrnfsPltvvtvavtlvvfvGvlvsslGga 40 
                 ++ ++  l v+ +a tlv f+G+ v+s G +
  CDO72821.1 219 ERAQYVQLLVIPAAFTLVGFIGIAVTSAGVV 249
                 344689999******************9976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.021
        GRA6  13 nfsPltvvtvavtlvvfvG...vlvsslGgaavaaesegv 49 
                 +f P  +vt a  +++f+    v++    g+ va++  +v
  CDO72821.1 322 AFVPWEIVTGAQGFLAFMNgytVFLGPFAGVMVADNWRAV 361
                 799**************95344888888999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2992.15
//
Query:       CDO72822.1  [L=244]
Description: hypothetical protein BN946_scf185002.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-15   54.9   1.0      9e-15   54.9   1.0    2.7  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    1.9e-11   44.3   0.4      3e-10   40.4   0.5    2.3  2  PEMT        Phospholipid methyltransferase
    1.4e-08   34.0   0.2    1.9e-08   33.5   0.2    1.1  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
  ------ inclusion threshold ------
      0.019   15.1   2.3       0.61   10.3   0.1    2.6  3  HTH_28      Helix-turn-helix domain
      0.023   14.2   0.4      0.035   13.6   0.4    1.4  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.83     3e+03      47      81 ..      41      74 ..      38      78 .. 0.63
   2 !   54.9   1.0   2.5e-18     9e-15       5      65 ..     115     175 ..     110     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.83
        ICMT 47 PnYllfvilelatllLlcnakltalvllalvalll 81
                P Y+   +  l +++ ++  + ++ v +a +a++l
  CDO72822.1 41 PDYMT-RTTTLQMAVTAVAKWALCGVAIAEAAVIL 74
                55665.55666666667777777777766555544 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 2.5e-18
        ICMT   5 vllaqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcn 65 
                  + + a+r+++ +tlG+++t ++a+++dh+lv++g+y+++rHP+Y+++v++  +  +Ll++
  CDO72822.1 115 GITGGAVRVWCHRTLGKFFTWQMAVQSDHQLVTTGPYAIVRHPSYTGWVLMFAGNFALLLS 175
                 578999*******************************************998888888765 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.5   8.3e-14     3e-10       4      73 ..     109     177 ..     107     195 .. 0.85
   2 ?    1.1   0.0      0.14   5.1e+02       7      49 ..     196     238 ..     186     240 .. 0.69

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 8.3e-14
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflG.laLitgsa 73 
                 ++++ll ++g +++++ +++lg+f t  + +  +++++lvt+G+Y ++++P y+g +l+f G  aL+ ++ 
  CDO72822.1 109 AAACLLGITGGAVRVWCHRTLGKFFTWQMAV--QSDHQLVTTGPYAIVRHPSYTGWVLMFAGnFALLLSKG 177
                 5689***********************9988..9999************************9435555544 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
        PEMT   7 lllialglllvlssiealgefgtfygdfFlelmdklvtsGiYr 49 
                  +++a  + +++s ++++ +   ++   F+++ ++  ++ +Yr
  CDO72822.1 196 SAILAYLASVTVSLLSRMAKEDAVLRREFGSQWEEWAKRTPYR 238
                 4444444555667777788888888888888777888888887 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.2   5.2e-12   1.9e-08     344     432 .]     138     244 .]     129     244 .] 0.84

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 5.2e-12
  ERG4_ERG24 344 qtktGskLlvsGWyglarkinYlgDwlq.slswsLatgfq...................svlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkk 422
                   +  ++L+++G y+++r++ Y+g +l+ +  ++L                         +l+y  ++   v L+ R +++++  ++ +G++wee+ k+
  CDO72822.1 138 AVQSDHQLVTTGPYAIVRHPSYTGWVLMfAGNFALLLSKGsyfveagcwrtrtgqvvasAILAYLASV--TVSLLSRMAKEDAVLRREFGSQWEEWAKR 234
                 5667789*****************76653344555433325688**********99988888887776..78899************************ PP

  ERG4_ERG24 423 vpykiipyvy 432
                  py++ipyvy
  CDO72822.1 235 TPYRLIPYVY 244
                 *********9 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.014        51       5      24 ..      57      76 ..      55      83 .. 0.86
   2 ?   10.3   0.1   0.00017      0.61      14      35 ..     106     127 ..      97     129 .. 0.87
   3 ?   -3.4   0.0       3.2   1.2e+04       5      17 ..     197     209 ..     195     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
      HTH_28  5 iikllaaGhsvreaArelgi 24
                + k+++ G++++eaA +l +
  CDO72822.1 57 VAKWALCGVAIAEAAVILAL 76
                7899***********99877 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00017
      HTH_28  14 svreaArelgisrrtvyrWikr 35 
                 s ++aA++lgi+   v++W++r
  CDO72822.1 106 SMSAAACLLGITGGAVRVWCHR 127
                 8899****************98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
      HTH_28   5 iikllaaGhsvre 17 
                 +i++++a ++v+ 
  CDO72822.1 197 AILAYLASVTVSL 209
                 8999998888765 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   9.7e-06     0.035     115     212 ..     102     206 ..      82     235 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.7e-06
     DUF1295 115 qalkaldviglalwlvgivlealaDqQlsaf...kkdpankgkvldsGLwrysRHPNYfgealiWwglflialea....leglealaiagpllltlllv 206
                   l+ ++ +++ l ++g ++ +   + l +f   +   ++  +++++G +   RHP Y g +l+  g f++ l++    +e   + + +g ++   +l 
  CDO72822.1 102 IGLTSMSAAACLLGITGGAVRVWCHRTLGKFftwQMAVQSDHQLVTTGPYAIVRHPSYTGWVLMFAGNFALLLSKgsyfVEAGCWRTRTGQVVASAILA 200
                 4556666666667777777777778888777777888999999************************99988877333322233555566666666665 PP

     DUF1295 207 fvsgip 212
                 +++++ 
  CDO72822.1 201 YLASVT 206
                 555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1659.90
//
Query:       CDO72823.1  [L=492]
Description: Aryl-alcohol oxidase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-37  129.3   0.2    2.4e-37  128.6   0.2    1.4  1  GMC_oxred_C  GMC oxidoreductase
    9.9e-34  117.1   0.0    1.3e-33  116.6   0.0    1.1  1  GMC_oxred_N  GMC oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.2   2.7e-41   2.4e-37       1     144 []     340     478 ..     340     478 .. 0.93

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 2.7e-41
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B.- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrM.G 97 
                  P+srG+vtl+s+++ +aplidp ++++++dla l ea+kaa++++aa+    +++ +     ++++ a+ +sd+++ +++++ v+t+ Hp+Gt+ M G
   CDO72823.1 340 PTSRGSVTLASASAFDAPLIDPAFMQTQSDLAILTEAVKAAHRFAAAP----AWKDFIIA--PFKDAAQTTSDDDIHAYIRRMVSTFRHPMGTAMMsG 431
                  89**********************************************....45555555..5778899999************************77 PP

                  STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  98 adpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  + ++++VV++dlrv+ v +LrVvDaS+fP + ga+ +++++a+Ae+a
   CDO72823.1 432 PLDSKGVVNPDLRVKKVNGLRVVDASIFPHIFGAHLQAPVYAIAERA 478
                  77777****************************************97 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   1.5e-37   1.3e-33      86     295 ..      10     234 ..       7     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.5e-37
  GMC_oxred_N  86 vNwsayiRtpaadldeWeeeaglegwssdevlpafkkvetaqale..........sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlng 173
                  v ++ y+R++++ +d+ +++ g egws+ ++ +++ k e  + +            ++hg +g+l  +  g+ +   ++++   ++   +p++ d+n+
   CDO72823.1  10 VHFMFYTRGSSDEFDRLARVTGDEGWSWRNIFSYILKTEMLSPPAdghnttgqvnPSVHGHAGPLLTSLPGNATVLDSRVIETTSQLSEFPFNLDMNS 107
                  779************************************66655599999999999***********999999999999999999999********** PP

  GMC_oxred_N 174 khqcGvcllgvtcrtgarqstarawLrpal.erpnleiltgakaekiil.....egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqr 265
                  +++ Gv++l+ t   g r+s+a+a+L + +  r+nl++l g++++++i      +  ++  +GVe  ++ ++ +   +a+kev+++aG++ + q+L++
   CDO72823.1 108 GNPLGVGWLQSTIGHGMRSSAATAFLTDVVlGRENLDVLIGTRVTRLIRteqflS--TPTFLGVELAQSASGPRISLTARKEVILSAGSIGTAQILML 203
                  ****************************9999***************88877644..9**************888999******************** PP

  GMC_oxred_N 266 SGlGkaehLkevgvdvvvdlp.vGknLqdHp 295
                  SG+G++++L  + +++ vdlp vGkn+qdHp
   CDO72823.1 204 SGIGDRQELSAHKINTLVDLPdVGKNMQDHP 234
                  ******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3446.40
//
Query:       CDO72824.1  [L=284]
Description: hypothetical protein BN946_scf185002.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.5   0.0    2.5e-10   40.6   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    9.4e-10   38.7   0.0    1.8e-09   37.7   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    9.4e-09   35.5   0.0    2.5e-08   34.1   0.0    1.7  1  GST_N     Glutathione S-transferase, N-terminal domain
     0.0054   16.7   0.1      0.011   15.7   0.1    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.21   11.8   0.0    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0     7e-14   2.5e-10       1      73 [.       9      96 ..       9     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 7e-14
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-..TT--SSEEETTS-.............EEESHHHHHHHHHHHH-G CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellakn..plgkvPvLeddge.............altdSlaIidyLeelypg 73
                Ly++ +Sp+  rvrlaL+e g  + + +++  ++  ++ +k     gkvP L+ +g+             ++ +Sl+I+++L +l+p+
  CDO72824.1  9 LYSAIDSPFPHRVRLALEEAGARYDTIWIDLMNKEGWYEEKVnpAGGKVPLLVYGGRelrpdeapsaeavKIPESLVILEFLADLFPD 96
                8999**********************************777666678*****888777888888999999***************996 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   5.1e-13   1.8e-09       2      69 ..      15      92 ..      14      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 5.1e-13
                -HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHHHHHCTT.TSSSEEE-........CTTE......EEESHHHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkglediisvv.vlepkgfekseefprlnpr.gtVPvLwd........kdgq......vineSseIlrylet 69
                +P++hRv++al++ g  + ++++ +++ +g++ +    ++np  g+VP+L+         +          i eS++Il++l++
  CDO72824.1 15 SPFPHRVRLALEEAGARYDTIWIdLMNKEGWYEE----KVNPAgGKVPLLVYggrelrpdE--ApsaeavKIPESLVILEFLAD 92
                8**********************55555566654....9**9847******9666666540..1555654666*********86 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0     7e-12   2.5e-08       3      75 ..       7      91 ..       5      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7e-12
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTT...S-SSEEEET.............TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnpl...gkvPaLedn.............gkkltESraIleYia 75
                +tlys+++sp++hr+rl+l+++g+ y ++ +d+ +    ++ ++ ++ +   gkvP+L+ +               k+ ES +Ile++a
  CDO72824.1  7 ITLYSAIDSPFPHRVRLALEEAGARYDTIWIDLMN----KEGWYEEKVNpagGKVPLLVYGgrelrpdeapsaeAVKIPESLVILEFLA 91
                79******************************933....466877766667********999999999999998899999999999987 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.1e-06     0.011      11      68 ..     138     209 ..     116     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
                 CCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-..............---..TT-HHHHHHHH CS
     GST_C_2  11 ldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf..............dir..eaypnlraWle 68 
                 +   l++++a L     +  +++++aD+a++p l rlr   +                     +++ +l++++e
  CDO72824.1 138 ILGLLEEFQAMLPPTG-FVAGEWSIADAAFIPILARLRLMLETGlgnftpevaqagveA-LhsPRFARLQRYYE 209
                 5566888888888887.8889****************9995433466666666665431.23467777777776 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-05      0.21      31      93 ..     137     218 ..     129     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-05
                 CHHHHHHHHHHC.HGTSSSSTTS--HHHHHHHHHHHHHHHH.................TCC..CC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  31 kflkyfekvlkk.kgggylvgdklTyADlalfqvldgleea.................eal..kkfpklkalyervearpkik 93 
                  +l+ +e++ +    +g+++g+  ++AD a+  +l  l+ +                 eal   +f +l+++ye ++arp+  
  CDO72824.1 137 SILGLLEEFQAMlPPTGFVAGE-WSIADAAFIPILARLRLMletglgnftpevaqagvEALhsPRFARLQRYYEDIAARPSMS 218
                 5555555555533488899996.*****************999888887777776655222445677788**********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2258.24
//
Query:       CDO72825.1  [L=2166]
Description: hypothetical protein BN946_scf185002.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.6e-163  540.8   0.0    1.6e-91  306.0   0.0    2.3  2  Sec63         Sec63 Brl domain
      2e-45  154.7   0.1    2.2e-25   89.4   0.1    3.2  3  DEAD          DEAD/DEAH box helicase
    1.1e-36  125.3   0.2    3.6e-36  123.7   0.0    2.1  2  Helicase_PWI  N-terminal helicase PWI domain
      2e-23   83.2   0.2    4.1e-15   56.2   0.0    3.0  3  ResIII        Type III restriction enzyme, res subunit
      5e-15   55.8   0.0      2e-08   34.6   0.0    4.1  3  Helicase_C    Helicase conserved C-terminal domain
      4e-06   27.1   0.2       0.23   11.7   0.1    3.3  2  AAA_22        AAA domain
    0.00016   21.2   0.0     0.0029   17.1   0.0    2.4  2  PhoH          PhoH-like protein
  ------ inclusion threshold ------
      0.012   14.7   0.0       0.24   10.4   0.0    2.4  2  T2SSE         Type II/IV secretion system protein
      0.094   12.7   0.2        1.8    8.6   0.0    2.4  2  Jak1_Phl      Jak1 pleckstrin homology-like domain


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.0   0.0     8e-95   1.6e-91       1     257 []     996    1300 ..     996    1300 .. 0.98
   2 !  232.7   0.0     2e-72   3.9e-69       1     256 [.    1829    2143 ..    1829    2144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 306.0 bits;  conditional E-value: 8e-95
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvkediespeaKvniLlqayisrlklegsdl 97  
                  +telGriaShYy++y++++++n++l+p+++  +l++i++ ++EF+ ipvR++Ek el+kLle+vpi+vke++e+p aK+n+Llqayis+lkleg++l
  CDO72825.1  996 STELGRIASHYYVTYSSMATYNQHLRPTMSSIELFRIFALSNEFKLIPVRQDEKLELSKLLERVPIPVKESVEEPAAKINVLLQAYISQLKLEGFAL 1092
                  69*********************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
       Sec63   98 vsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................. 145 
                  v+D++y+ q+a+ri+ra++ei+l++gw+ +a+++l+L+kmve+r+w s                                                 
  CDO72825.1 1093 VADMVYVQQSAGRIIRAIFEICLKRGWAVPAKTALDLCKMVERRMWGSmtplrqfkgvpaeiirkaegkqfpwyryfdltppeigeligipnagrlv 1189
                  **********************************************888************************************************ PP

                  ......S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSC CS
                  ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 ......lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklastqevkleftvplsepg 234 
                        +Pkl+++a+vqpitr+ lr+++ti        pdf wd+k  g +e+fw++ved +++ +l+++ ++l+++ +a+ +e+ +++tvp+ ep 
  CDO72825.1 1190 hrlvhsFPKLQLQAQVQPITRTLLRIDLTII-------PDFRWDEKihGGTESFWILVEDVDGEIILFHDTFILRQR-YAE-DEHYVTLTVPMFEPV 1277
                  *******************************.......************************************665.664.8************** PP

                  CEEEEEEEEESSSSS-EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  235 pkqltvrlisdswlgldqevtis 257 
                  p++++++++sd+wl+++++ +is
  CDO72825.1 1278 PPNYYISIVSDRWLHAETRLPIS 1300
                  ******************99986 PP

  == domain 2  score: 232.7 bits;  conditional E-value: 2e-72
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--S.SSTTSHHHHHHHHHHHHHTT---SSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvk.ediespeaKvniLlqayisrlklegsd 96  
                  p++lG+ia++Y+isy t++++  slk++t+lk+lLe++ss++EFe+ip+R++E+  l++++++vp+k++  d+e p++K+++Llqa++srl+l+  d
  CDO72825.1 1829 PLNLGMIAAYYNISYVTVEVYTLSLKERTKLKGLLEVVSSSAEFESIPIRRHEDVLLRRIYDRVPVKLEkADFEAPHFKTFLLLQAHFSRLQLP-PD 1924
                  789*****************************************************************87************************.** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................ RF
       Sec63   97 lvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................ 145 
                  l++D++ +l+++  +l+a+v++++s+ wl++ l +++Ls+m++q++w++                                                
  CDO72825.1 1925 LAADQVLVLDKVLTLLSACVDVMSSNAWLNA-LGAMDLSQMCVQACWETdsplkqiphfepdvikrckdagvetvydimemeddkrnellqmdarqm 2020
                  ******************************9.***************999*********************************************** PP

                  .........S--EEEEEEE...CEBTTSEEEEEEEEEESSS......S-S......CTSSS-CHTSBEEEEEEEEETTTTEEEEEEEEEESSTTTTT CS
                  .........xxxxxxxxxx...xxxxxxxxxxxxxxxxxxx......xxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 .........lPkleieaev...qpitrsklrvevtiereee......esk......pdfpwdkkgksekfwlvvedsendellaikrvtlekkklas 218 
                           +P+l++++++   + ++ s+++++v+++++ +      e +      p++p++k     ++w+v++++++++llaik+vt+ +     
  CDO72825.1 2021 rdvatfvnsYPTLDVNYQLakgEYTAGSPINIQVSLSKDADedmeggE-DeevvvaPFYPKKK---LANWWVVIGEPKSRQLLAIKKVTVHR----- 2108
                  **********************9**************77776776652.15789*********...************************87..... PP

                  EEEEEEEEEEE-.SSCCEEEEEEEEESSSSS-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  219 tqevkleftvplsepgpkqltvrlisdswlgldqevti 256 
                  + +v+lef++p   +g++ l++++i+ds+lg+d ++++
  CDO72825.1 2109 SLNVRLEFSLP---QGQHALKLYAICDSYLGADHDIDL 2143
                  58899*****5...4689***************99876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.1   1.1e-28   2.2e-25       2     173 ..     497     673 ..     496     678 .. 0.85
   2 ?   -0.6   0.0      0.48   9.5e+02     153     170 ..     816     831 ..     800     835 .. 0.79
   3 !   60.9   0.0   6.4e-20   1.3e-16       2     165 ..    1345    1506 ..    1344    1514 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.1e-28
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 +iQ++ +p +  +++ +l++a+TG+GKT ++++ +l+++ +         + ++ k+++++P+++L+++++ n+++++  ++++v  ++g+ a+   ++
  CDO72825.1 497 RIQSKLYPVAFgTDEPILLCAPTGAGKTNVAMLTILNELGKYrdeatgqFDLDAFKIVYIAPMKALVQEMVGNFSSRLAVYGVKVGELTGD-AQ-MTKQ 593
                 799*****99944569***********************877888887767888*************************999999866664.33.3445 PP

                 HHHTTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 ++ ++++i+v+tp+++d ++  st +  ++ vr++++DE++ l d+ +++ ++++++++ +  +++++  +++ lSATlp ++
  CDO72825.1 594 QI-SETQIIVTTPEKWDVITrkSTDTSYTNLVRLIIIDEIHLLHDD-RGPVLESVIARTIRRMEQTNEYVRLVGLSATLP-NY 673
                 56.678***********998764555458889*************8.999999999999888899898899********9.44 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.48
                 CTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD 153 tcdgklqrqvivlSATlp 170
                  +dg+lq  v+v++ATl 
  CDO72825.1 816 FADGHLQ--VLVCTATLA 831
                 5677766..*******96 PP

  == domain 3  score: 60.9 bits;  conditional E-value: 6.4e-20
                  HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEE.EEETTSSHHHHHHHHH CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxx RF
        DEAD    2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvl.liiggvaardqlskld 95  
                  +iQ +++++++ ++++v++ a+TGsGKT ++ +++l+  +   ++++++a+++eP +e++   +++++k + +++  ++  +++g+++   +l+ l 
  CDO72825.1 1345 KIQTQVFQALYtTDDNVFIGAPTGSGKTICAEFALLRLWS---KREHKRAVCIEPYQEMVDLRVEEWRKKFGNLQgGKEIvSLTGETS--ADLRLL- 1435
                  79********955679********************6664...68889*******************888887554555515555444..588889. PP

                  TTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEE CS
                  xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   96 ngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivl 165 
                  ++ d+++ tp ++d l   ++++ n++ + +l+ DE++ +  +  +++++ ++++++  +++++ + +++++
  CDO72825.1 1436 EKGDLIICTPTQWDVLSrrWRQRKNVQTIGLLIADEVQLVGGE-VGPTYEVVISRTRYVSAQTEIKTRIVAC 1506
                  889***********98888566669*****************9.***********99998888855566666 PP

>> Helicase_PWI  N-terminal helicase PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       8.1   1.6e+04      29      51 ..     137     157 ..     125     182 .. 0.61
   2 !  123.7   0.0   1.8e-39   3.6e-36       1     111 []     275     382 ..     275     382 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8.1
  Helicase_PWI  29 aqelaeevleiLkseadelrelE 51 
                   + + a++vle+Lk+e  +l++++
    CDO72825.1 137 VRSAADMVLEALKNE--NLKDFD 157
                   456677778888777..233333 PP

  == domain 2  score: 123.7 bits;  conditional E-value: 1.8e-39
  Helicase_PWI   1 ekdelsvkeidafWLqrelkkiykDaeeaqelaeevleiLkseadelrelEnkLvelldydkfdliklllknrekivyctklaqaqseeekqeieee 97 
                   +kd +s+++idafW+qr+++++y+D+ +a+++a++vl+iL se +++r++En+L+el+dy++f li++++knr++iv+ctkl +++  +e+ ++e +
    CDO72825.1 275 DKDIVSPHSIDAFWVQRQISEVYPDPVTAADKASTVLSILGSE-SSVRDCENQLMELFDYQHFPLIRKFVKNRDVIVWCTKLMRSDA-DERVNVEVA 369
                   5889***************************************.789***************************************9.********* PP

  Helicase_PWI  98 mkekpeleeileel 111
                   m+ek ++ +il+el
    CDO72825.1 370 MREK-GVGWILREL 382
                   ****.******997 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.1e-18   4.1e-15      23     170 ..     509     671 ..     483     672 .. 0.87
   2 ?   -4.0   0.2       6.3   1.3e+04      49      95 ..     728     773 ..     724     786 .. 0.64
   3 !   23.7   0.0     2e-08   3.9e-05      21     141 ..    1345    1472 ..    1331    1495 .. 0.79

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.1e-18
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S...............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEH CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkee..........kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvtti 111
                  d+ +l+ ++TG+GKT va+ +i + l k++ e          k++ ++p k+l++ +  +f++ l  +   + ++++gd ++  ++++++++i+vtt 
  CDO72825.1 509 TDEPILLCAPTGAGKTNVAMLTILNELGKYRDEatgqfdldafKIVYIAPMKALVQEMVGNFSSRLAVYGV-KVGELTGDAQMT-KQQISETQIIVTTP 605
                 678999*************999988888888889********************************98854.788899999999.9************* PP

                 HHHHHTH........HHHTTT-SEEEEETGGGTTS......T.....TTHHHHHT---SEEEEEESS-S CS
      ResIII 112 qsldadseeeeeeseellrdrfdviiiDEaHrlgak.....k.....swreilekfkeavllglTATpe 170
                 ++ d +    ++ +++   +   +iiiDE H l+++     +     ++r+  + ++   l+gl+AT++
  CDO72825.1 606 EKWDVIT---RKSTDTSYTNLVRLIIIDEIHLLHDDrgpvlEsviarTIRRMEQTNEYVRLVGLSATLP 671
                 *******...7788888888899************8665551566668888899999999*******86 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.3
                 -S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B- CS
      ResIII  49 lkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkk 95 
                 l +++++++l++v++++ + +t + +++++ e+ + i+++v+ ++ +
  CDO72825.1 728 LDQAGKNQTLVFVHSRKETAKTAKFIRDMAIEKET-ITQFVKPEGAT 773
                 44556668888888888777777777777776644.56665555544 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 2e-08
                  ............TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.......-SE CS
      ResIII   21 s..........krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkkakekdstnkki 106 
                  +          + d +++i ++TG+GKT++a  +  rl++k++ ++++ + p +++++   ee++k + + +   +  +++g++     +  ++ ++
  CDO72825.1 1345 KiqtqvfqalyTTDDNVFIGAPTGSGKTICAEFALLRLWSKREHKRAVCIEPYQEMVDLRVEEWRKKFGNLQGGkEIVSLTGETSAD-LRLLEKGDL 1440
                  222333335558899****************9999999999999***********99988888887777765323333355555555.677789999 PP

                  EEEEHHHHHHTH........HHHTTT-SEEEEETG CS
      ResIII  107 lvttiqsldadseeeeeeseellrdrfdviiiDEa 141 
                  ++ t  + d  s   +++++++  +++ ++i DE+
  CDO72825.1 1441 IICTPTQWDVLS---RRWRQRKNVQTIGLLIADEV 1472
                  999999999999...89999999999999999996 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0     1e-11     2e-08      12     109 ..     729     873 ..     719     875 .. 0.67
   2 ?   -2.1   0.0       2.3   4.7e+03       9      55 ..    1382    1433 ..    1375    1435 .. 0.73
   3 !   15.7   0.0   7.4e-06     0.015      13     109 ..    1569    1709 ..    1559    1710 .. 0.69

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1e-11
                 HTTTTSEEEEEESSHHHHHH.HHHH...........................HHHT...........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  12 leeeggkilifvntidrlek.vkll...........................lekk...........gikvavlhgelpqnereeileqfnkgesdvLi 71 
                  ++ ++++l+fv+++++  k +k++                           +  +           ++ + ++h+ ++ ++r  + e f +g+ +vL+
  CDO72825.1 729 DQAGKNQTLVFVHSRKETAKtAKFIrdmaieketitqfvkpegatreilleeT--NnvkdpnlkdllQFGFGIHHAGMSREDRGLVEELFADGHLQVLV 825
                 56667788888888884433222223334444444444555555555555430..134445555667899999************************** PP

                 ESGGGTSSSTSTTESEEE.....ESSSS......SSHHHHHHHHTTSSS CS
  Helicase_C  72 atdvaerGidipkvnlVi.....nfdlp......rnvtsyiqriGRtgR 109
                 +t  ++ G+++p +++Vi     ++++        +++++ q+ GR+gR
  CDO72825.1 826 CTATLAWGVNLP-AHTVIikgtqIYNPEkgrwveLSPQDVLQMLGRAGR 873
                 ***********9.555652444444444655555556************ PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
                  HHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.....TSTEEEESTTSTHHHH CS
  Helicase_C    9 llkleeeggkilifvntidrlek.vklllekk.....gikvavlhgelpqner 55  
                  l  +++e+++++++ +++++++  v+  ++k+     g +++ l+ge++++ r
  CDO72825.1 1382 L-WSKREHKRAVCIEPYQEMVDLrVEEWRKKFgnlqgGKEIVSLTGETSADLR 1433
                  4.478889999999999998876744444444555579999999999998876 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 7.4e-06
                  TTTTSEEEEEESSHHHH................HHHHHH...................HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C   13 eeeggkilifvntidrl................ekvkll...................lekkgikvavlhgelpqnereeileqfnkgesdvLiatd 74  
                   + ++ ++ifv++++++                  +++l                   +e+    + ++h  l++++++ + + f++g ++vLia++
  CDO72825.1 1569 YSPHKPVIIFVPSRRQCrltaddiithcgaddnP-TRFLhveeadlephlehisdaglKETLRHGIGYYHEALSKQDKRIVERLFQHGAIQVLIASK 1664
                  4567777888888886644444444444443320.333344444444444444555435555899999***************************** PP

                  GGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSS CS
  Helicase_C   75 vaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgR 109 
                  + + ++ +    +Vi+++++           + v ++ q++GR+ R
  CDO72825.1 1665 DTAWSLPVS-SYMVIIMGVQyyegkehryvdYPVMDVLQMMGRACR 1709
                  ********6.6778888888666655554444469********998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00012      0.23       7     112 ..     512     646 ..     508     666 .. 0.56
   2 !   11.4   0.0   0.00014      0.29       9     103 ..    1362    1475 ..    1356    1510 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      AAA_22   7 ilvvtGesGtGKTtll.rrlleqldeeakaee....erpevvfvtlpsstsskdllrellralglelka...........................erl 73 
                  +++++++G+GKT ++  ++l++l ++ + ++     ++  + + +p +     l +e++ ++ ++l                                
  CDO72825.1 512 PILLCAPTGAGKTNVAmLTILNELGKYRDEATgqfdLDAFKIVYIAPMKA----LVQEMVGNFSSRLAVygvkvgeltgdaqmtkqqisetqiivtT-- 604
                 689**********7651667777766655555897733333333333333....3333333333333333343666666666677765433333322.. PP

      AAA_22  74 sseellealeqalrarav.......ielliiDEaqhlr..seealeeL 112
                          ++ + ++++       ++l+iiDE++ l   +  +le +
  CDO72825.1 605 ------PEKWDVITRKSTdtsytnlVRLIIIDEIHLLHddRGPVLESV 646
                 ......33444444444455555556**********955435555444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
      AAA_22    9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdl.lrellralglelka......................erlsseellea 81  
                  ++ +++G+GKT +++  l +l  ++k e  +++ v +++ +++ +++   +r+ + +l+ +++                        + + + l ++
  CDO72825.1 1362 FIGAPTGSGKTICAEFALLRL--WSKRE--HKRAVCIEPYQEMvDLRVEeWRKKFGNLQGGKEIvsltgetsadlrllekgdliicTPTQWDVLSRR 1454
                  67789***************9..44444..4444444444444311111122223333322222444455566699996666666445555555555 PP

      AAA_22   82 leqalraravielliiDEaqhl 103 
                   +q  + +  i+lli DE+q +
  CDO72825.1 1455 WRQRKNVQT-IGLLIADEVQLV 1475
                  555555555.5*********88 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12   2.4e+02      20      42 ..     511     533 ..     494     541 .. 0.76
   2 !   17.1   0.0   1.5e-06    0.0029       2      60 ..    1340    1399 ..    1339    1420 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
                 SEEEEE--TTSSTTHHHHHHHHH CS
        PhoH  20 divfaiGpaGtGKtylavalave 42 
                 + +   +p+G+GKt +a+ + ++
  CDO72825.1 511 EPILLCAPTGAGKTNVAMLTILN 533
                 5567889**********987665 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.5e-06
                  ----SHHHHHHHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-- CS
        PhoH    2 ikpktkeQkeylealk.kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpave 60  
                  i++ +k Q+++++al  + d vf+ +p+G+GKt  a  + +++++k++ kr + + p  e
  CDO72825.1 1340 IQTFNKIQTQVFQALYtTDDNVFIGAPTGSGKTICAEFALLRLWSKREHKRAVCIEPYQE 1399
                  7788999********97888*********************************9999766 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.071   1.4e+02     131     156 ..     512     538 ..     499     543 .. 0.81
   2 ?   10.4   0.0   0.00012      0.24     110     168 ..    1342    1399 ..    1319    1407 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.071
       T2SSE 131 lilvsGgTgsGKttll.yallkeinks 156
                  il+  +Tg GKt ++  ++l+e+ k+
  CDO72825.1 512 PILLCAPTGAGKTNVAmLTILNELGKY 538
                 59999********77647888888776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00012
       T2SSE  110 aeealkekiaevlrkavrerglilvsGgTgsGKttll.yallkeinks.derivtvEDpvE 168 
                    ++ + ++ ++l    ++  ++ +  +TgsGKt+ +  all    k+ ++r v +E   E
  CDO72825.1 1342 TFNKIQTQVFQALY---TTDDNVFIGAPTGSGKTICAeFALLRLWSKReHKRAVCIEPYQE 1399
                  33344444444444...45999***************445555555556789999997666 PP

>> Jak1_Phl  Jak1 pleckstrin homology-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.18   3.6e+02      51      86 ..      51      85 ..      41      99 .. 0.52
   2 ?    8.6   0.0   0.00089       1.8     104     137 ..    2102    2135 ..    2079    2140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.18
    Jak1_Phl 51 segeksrkskekkkskkkkaeskkkkqeekekkeek 86
                ++  +++ +k+ +k+kkk ae k++  e+ +k++++
  CDO72825.1 51 GSRVQREVPKDIEKKKKKAAE-KQEGAEKPSKRKTA 85
                444445556665665555555.44444444444443 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00089
    Jak1_Phl  104 skvsihkqDnkclelkLssraeALSlvsLvDGYF 137 
                  +kv++h+  n +le++L+  ++AL l ++ D Y 
  CDO72825.1 2102 KKVTVHRSLNVRLEFSLPQGQHALKLYAICDSYL 2135
                  589****************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.28u 0.28s 00:00:01.56 Elapsed: 00:00:00.47
# Mc/sec: 13711.19
//
Query:       CDO72826.1  [L=597]
Description: hypothetical protein BN946_scf185002.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.9e-123  411.9   0.0   4.6e-123  411.7   0.0    1.0  1  DUF4246   Protein of unknown function (DUF4246)


Domain annotation for each model (and alignments):
>> DUF4246  Protein of unknown function (DUF4246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.7   0.0  2.6e-127  4.6e-123       3     452 ..      40     532 ..      38     533 .. 0.85

  Alignments for each domain:
  == domain 1  score: 411.7 bits;  conditional E-value: 2.6e-127
     DUF4246   3 vrEvamlklmeaitdkpdWekkvfdeeivakWkkealaaeeeel.......................lsekmadwcieELrdkakefeet.glvavlds 77 
                 + E+ + ++  +i  kp W++kvfde+iv++Wk+e ++++++++                       ++e++++++++ELr+ a++ +e+ g+ ++  +
  CDO72826.1  40 LVEFRLRRFAREILAKPRWWEKVFDEDIVTRWKREFAEHDRATVenywggekrleegngekqwprdpITEAQLQYLFDELRYMANQRDEStGISPT--T 136
                 67999******************************99999888799*****************************************776366444..3 PP

     DUF4246  78 ssavvksDtlvseelkeeLkkavakLedvpeeekdwhpgsdeqvldlVhpslfplvYgrtrvl....kdgv......vkledalesagkGevlek.... 162
                    v++s  l+s+elk ++k+ ++kL+dvp+ ekdwhpgs++qvldlVhpslf+l  +r+ +     +  +      ++le+  ++  + e   +    
  CDO72826.1 137 IPMVYESPALISQELKGAIKSLAEKLQDVPDYEKDWHPGSNKQVLDLVHPSLFCLRIDRSFIHyplsR--HndqfqqLTLEEYYRKRPDIE---Rqatq 230
                 69**********************************************************99844321..133444444554444222222...12334 PP

     DUF4246 163 ..............kllskkfqwLPcevefsedgksvkitSYINnLhpkkhkelYsviekliekaiplwnevlakl.keeereprrieeeepeeeeeee 246
                                ++sk +qwLP+++++sedg+ v+  SYINnL+p++h e Y +i +++e++ip++++v ++  + + + p  ie    + +++  
  CDO72826.1 231 twqrdrmdslmpfdFTVSKAYQWLPTDFAVSEDGR-VTPLSYINNLNPADHPEAYLTIPSILERFIPMFERVASDElSPRPECPFPIEP--DAWYCDVY 326
                 4555666666666669******************9.*************************************9854445555555522..23333333 PP

     DUF4246 247 eedeeeeeereeeweeerrkvvlpepeksfsy.keeksvklkeeefkkkgLqVivklanieLtPekpeyeggswhveGqlnEhIvAtalyyydseNite 344
                 +e  +   ++ +ew + +r++ lpe  + f++ k +++v++   + + ++LqVivk+ani LtPe+p+y+ggswhveG+ nE+++At+lyyyds+Ni+e
  CDO72826.1 327 DECPDLDGDELDEWYRIHRWPFLPEI-NPFQPpKPNSRVDF---SLNGRTLQVIVKMANIVLTPENPTYPGGSWHVEGMANERVIATGLYYYDSDNISE 421
                 34446678889999999999****95.34444244445555...35679************************************************** PP

     DUF4246 345 srLsFrqkvde..eeakeeleyeqddhealeevfgiene.sslqelGsvetkegrllaFpNvlqhrvepfeLaDktkpGhrkilaLfLVDPhiriista 440
                 srL Fr +v +  +++ + l+y+q d++ +  v+g++n+ +  q+lG++ + e+++++FpN++qhrv pfeL+D++ pGhrkila+fLVDP  +i st+
  CDO72826.1 422 SRLLFRAAVGDgeCNSGTMLTYDQYDYRGYLVVYGVTNDvQLNQQLGHIVALEDKCIVFPNIYQHRVAPFELTDHSCPGHRKILAFFLVDPLNPIHSTT 520
                 *******6655565668899******************8466********************************************************* PP

     DUF4246 441 nVppQqkdwwae 452
                  VppQ+++w+++
  CDO72826.1 521 VVPPQNAQWYKD 532
                 *********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4129.12
//
Query:       CDO72827.1  [L=373]
Description: hypothetical protein BN946_scf185002.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-15   55.6   0.0      1e-14   54.8   0.0    1.4  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   5.7e-19     1e-14       2     108 ..     117     230 ..     116     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 5.7e-19
                 HC-CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHG.........CTEEEEESSS....SECGCTTCCCCTCCHHHHHHHHHHH CS
         UDG   2 gegppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdlese.........qgvyitnvvkcrppgnrdtptsaeikacaplleeeiell 91 
                 g+ p  ++v+++G +Pg +++  g++F +++ n ++k+l+ a l+ +l              +++tn+v  rp  + +++  +e+ a+ p l ++i + 
  CDO72827.1 117 GQEPDMLDVLFCGINPGQKSATVGHHF-AHPTNHFWKCLHGAQLTDRLLPAsedytlpdsYYLGLTNLVE-RPSAQAAELANSEFTAGVPALLHKIVRK 213
                 6778999********************.******************888879******999999******.7766558************999999999 PP

                 HSSEEEEESHHHHHH.. CS
         UDG  92 kprlivllGktaakall 108
                 +pr+++++Gk  +++++
  CDO72827.1 214 RPRVVCFVGKAIWESFI 230
                 9*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2690.04
//
Query:       CDO72828.1  [L=259]
Description: hypothetical protein BN946_scf185002.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-06   26.3   0.0    1.9e-05   25.0   0.0    1.6  2  GST_N_3   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.021   15.1   0.1      0.061   13.6   0.0    1.9  2  GST_N_2   Glutathione S-transferase, N-terminal domain
      0.095   12.7   0.0       0.22   11.6   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
       0.11   12.8   0.1       0.25   11.7   0.1    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.3e-09   1.9e-05      11      74 ..      19      95 ..      12      96 .. 0.85
   2 ?   -3.5   0.0       3.3   1.5e+04       8      18 ..     166     176 ..     161     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.3e-09
                HHHHHHHHHHT--EEEE---TTTTHHHH.HHH-TT--SSEEETTS-............EEESHHHHHHHHHHHH-GG CS
     GST_N_3 11 rrvrlaLnekglpvevvevtpgehdeel.laknplgkvPvLeddge............altdSlaIidyLeelypgp 74
                + v +aL+e + ++  + ++ ++++e++ +++np+ kvP++  +g             +l +Sl +++++ +lyp++
  CDO72828.1 19 TAVEIALHEAKAKHIQYQIDLQNKPEWYaPKVNPASKVPAIAYGGPdvppdqpspesvKLAESLILVEFIADLYPNS 95
                6799*********999************88888********54444445555788889****************975 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.3
                 HHHHHHHHHHH CS
     GST_N_3   8 pyarrvrlaLn 18 
                 p+  r+r+aL+
  CDO72828.1 166 PFLGRARIALK 176
                 78889999985 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05     0.061       8      68 ..      21      89 ..      16      91 .. 0.73
   2 ?   -3.4   0.0       2.8   1.3e+04       3      13 ..     166     176 ..     165     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                HHHHHHHCT--EEEEEEH...-TTSHHHHH.HHHCTTTSSSEEE-...........CTTEEEESHHHHHHHHH CS
     GST_N_2  8 vlialalkglediisvvvlepkgfekseef.prlnprgtVPvLwd...........kdgqvineSseIlryle 68
                v ial++ +  +i   +    +  +k+e++ p++np  +VP++             +++  ++eS+ ++++++
  CDO72828.1 21 VEIALHEAKAKHIQYQI----DLQNKPEWYaPKVNPASKVPAIAYggpdvppdqpsPESVKLAESLILVEFIA 89
                77888888887777777....44577788878***********998888876555445557778887777776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.8
                 HHHHHHHHHHH CS
     GST_N_2   3 PwahRvliala 13 
                 P+  R++ial+
  CDO72828.1 166 PFLGRARIALK 176
                 78889***996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.9e-05      0.22      13      51 ..     138     175 ..     133     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.9e-05
                 HCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHH CS
     GST_C_2  13 aaldaleahLadspflfGdqptlaDialapflvrlraag 51 
                 +a+++l+ +L     ++ +  +laDia +pfl+r+r a 
  CDO72828.1 138 EAVEFLQGLLPEEG-YAIGPYSLADIAITPFLGRARIAL 175
                 56666666666666.444678**************9885 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.5e-05      0.25      13      75 ..      17      89 ..      10      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.5e-05
                THHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHH..HHCTTS-SSEEEET............TEEEESHHHHHHHHH CS
       GST_N 13 rahrirlllaakgveyevvpldfeageekspell..klnplgkvPaLedn............gkkltESraIleYia 75
                 a +++++l +++++  + ++d+   + ++pe++  k+np  kvPa   +              kl+ES + +e+ia
  CDO72828.1 17 SATAVEIALHEAKAKHIQYQIDL---Q-NKPEWYapKVNPASKVPAIAYGgpdvppdqpspeSVKLAESLILVEFIA 89
                56778888888877777777776...3.4577773556777*****9998888888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1853.01
//
Query:       CDO72829.1  [L=1575]
Description: hypothetical protein BN946_scf185002.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-40  137.3   0.0    3.1e-24   85.3   0.0    2.3  2  AMP-binding  AMP-binding enzyme
    1.1e-11   44.9   0.2    2.4e-11   43.8   0.2    1.6  1  PP-binding   Phosphopantetheine attachment site
    1.8e-07   30.6  10.5    5.9e-05   22.6   0.1    5.8  6  Hexapep      Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
          1    9.2   7.3        1.1    9.1   0.6    3.8  4  Hexapep_2    Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.6e-18   1.1e-14       9     257 ..      44     294 ..      39     300 .. 0.76
   2 !   85.3   0.0   6.9e-28   3.1e-24     257     421 ..     276     438 ..     273     440 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.6e-18
                  TTSEEEEE.CCSTEEEEHHHHHHHHHHHH...HHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETC CS
  AMP-binding   9 pdkvalvd.sgegqtlTYreldervnrlA...agLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatv 102
                   d +al++ + +   lT + l++ v+++A   +gL +  ++++dr++++lp+++e  va++ i+++  + +p+n + ta ela   +  +ak+++ t+
   CDO72829.1  44 TDSPALYSpDMTRPPLTHSMLHNFVKNFAlptSGLHK-RLGPDDRIMLVLPTGAENAVAIMSIASY-HTGAPINFNCTAGELAEDAHRLKAKAVV-TT 138
                  5777776676667779999999999999977789997.8************************998.5899************************.44 PP

                  TCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH CS
  AMP-binding 103 dsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk 192
                   ++    +l++ +++l a  + +++ + +++   ++  +++se+++e        p++++  + ++  +++ TSGT Gk K V +  r l+  ++ + 
   CDO72829.1 139 RDAVdRLELRKLREELGAEIIFVHVRNLGPAGLFDMSVMTDSEDQSEwdqivyeLPPPSKLHNLENQSLVLHTSGTSGKKKVVPYNLRCLIVGTCCV- 235
                  4444455566666665555555555555544433333333333332255788874445556677999********************9998775553. PP

                  HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEE CS
  AMP-binding 193 letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtvi 257
                    + ++l  +dv + ++pl+h+ g+i +l+++++sG++ +++   +++     +++i   ++++i
   CDO72829.1 236 -AKSWDLCTEDVNMNMMPLFHVGGIIRNLWAPMFSGGSAIMYYAAPTM-----HHAILSSRPSHI 294
                  .455665578999*************************9999866653.....345555666665 PP

  == domain 2  score: 85.3 bits;  conditional E-value: 6.9e-28
                  EEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TT CS
  AMP-binding 257 iagvPrvleallesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDee 354
                   +++P++ +a+l+s++     + +   ++r++  +++ l p+l+++++++fg  +l +YG+TE+ ++++ +p++ +  ++g +  + +g  + i D+ 
   CDO72829.1 276 YYAAPTMHHAILSSRPSHI--HPSTDTRIRMIANAAGGLLPSLAQELKDTFGAVILPSYGMTECMPIAS-PPTNYQLDRPG-CSGIACGPYMSIRDPF 369
                  6899*********865552..2223356***999**********************************9.88888877887.666669********98 PP

                  TSC.BEETTSEEEEEEEETTS-SEBTT-..HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEE CS
  AMP-binding 355 tge.pvpdgeeGellvrgpgvmkgYlkk..peataeafdsegrwlrTGDlgrldedGyleivgRkkdlik 421
                  ++e +++ g +G +++rg  +++gY k+  + +  ++f se +w+  GD+g++d dGyl+i+gR+k++i+
   CDO72829.1 370 NLErEMAIGATGAVCFRGLPTFSGYEKEigQPLDTSSFSSE-GWFDGGDVGFMDSDGYLFITGRSKEIIN 438
                  7651568*******************985545566678745.7*************************96 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   5.3e-15   2.4e-11       3      67 .]     659     723 ..     658     723 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 5.3e-15
  PP-binding   3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 +r++vae+l+ ++  i+ d+d+f  G++Sll+ +l++ +++  gv++ +sd+f+ +t++ +a+++
  CDO72829.1 659 VRDIVAELLDKDPGTIAGDSDFFLIGGNSLLLGRLAHHIRKDMGVTLKVSDIFTSSTINGIADLI 723
                 89************************************************************987 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.017        77       2      16 ..     892     906 ..     890     909 .. 0.60
   2 ?    3.4   0.3     0.016        70       2      22 ..     941     961 ..     940     970 .. 0.71
   3 ?    2.7   0.0     0.026   1.1e+02      21      34 ..    1155    1168 ..    1154    1170 .. 0.83
   4 !   22.6   0.1   1.3e-08   5.9e-05       2      32 ..    1179    1209 ..    1178    1210 .. 0.96
   5 ?   -0.8   0.1      0.31   1.4e+03      20      28 ..    1406    1414 ..    1405    1420 .. 0.65
   6 ?   -2.4   0.0         1   4.7e+03      21      35 ..    1430    1444 ..    1429    1445 .. 0.54

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.017
                 EEEETTEEE-TTEEE CS
     Hexapep   2 tvIGsnvlIgpfavi 16 
                 ++IG++v+I++ a +
  CDO72829.1 892 AHIGKDVKIDKSARL 906
                 566666666666554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
                 EEEETTEEE-TTEEEETTEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkI 22 
                 +vIG n+ +  ++ i ++++I
  CDO72829.1 941 VVIGRNAAVNTYTNISPGAII 961
                 677777777777777777777 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.026
                  EE-TTEEEETTEEE CS
     Hexapep   21 kIGdnvkIgagvvi 34  
                  +IGdnv+ g+ + +
  CDO72829.1 1155 EIGDNVVFGSRSEV 1168
                  69999999998776 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 1.3e-08
                  EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep    2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32  
                  +vIGs+++I   +v+++++k+G+ v+ g+g+
  CDO72829.1 1179 VVIGSGSMIADRCVLMPGAKVGRKVVMGSGA 1209
                  79***************************98 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.31
                  EEE-TTEEE CS
     Hexapep   20 VkIGdnvkI 28  
                  +kIG+++ I
  CDO72829.1 1406 AKIGKDCAI 1414
                  566666644 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 1
                  EE-TTEEEETTEEEE CS
     Hexapep   21 kIGdnvkIgagvvig 35  
                  + Gd+v I  ++v++
  CDO72829.1 1430 EMGDRVAIDDCSVVA 1444
                  556666666666654 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   6.4e+03       1       8 [.     940     947 ..     940     949 .. 0.65
   2 ?    9.1   0.6   0.00024       1.1       4      32 ..    1156    1187 ..    1154    1189 .. 0.69
   3 ?    2.8   0.6     0.023     1e+02       2      29 ..    1179    1208 ..    1173    1209 .. 0.86
   4 ?    0.1   0.1      0.16   7.1e+02       3      10 ..    1407    1414 ..    1404    1422 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
                 .EEE-TT- CS
   Hexapep_2   1 pviIGdnC 8  
                 pv IG n 
  CDO72829.1 940 PVVIGRNA 947
                 67777774 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00024
                  E-TT-EE-TT-EE..SEEE-.TT-EE-TT-EE CS
   Hexapep_2    4 IGdnCliGanagi..GvslG.dncvvgaGvvi 32  
                  IGdn+++G+++++    s+G +++v+g+G++i
  CDO72829.1 1156 IGDNVVFGSRSEVftTDSIGsEKVVIGSGSMI 1187
                  ************76533455345666666655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.023
                  EEE-TT-EE-TT-E.E.SEEE-TT-EE-TT CS
   Hexapep_2    2 viIGdnCliGanag.i.GvslGdncvvgaG 29  
                  v IG  ++i  +++ + G ++G+++v g+G
  CDO72829.1 1179 VVIGSGSMIADRCVlMpGAKVGRKVVMGSG 1208
                  788899999889995599*****9999988 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.16
                  EE-TT-EE CS
   Hexapep_2    3 iIGdnCli 10  
                  +IG++C i
  CDO72829.1 1407 KIGKDCAI 1414
                  67777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.42
# Mc/sec: 11352.63
//
Query:       CDO72830.1  [L=284]
Description: hypothetical protein BN946_scf185002.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-38  131.9   0.2      2e-38  131.5   0.2    1.2  1  Mis12         Mis12 protein
  ------ inclusion threshold ------
       0.07   12.8   1.0        1.1    9.1   0.0    2.6  2  PLN_propep    Protealysin propeptide
       0.14   12.5   1.0       0.45   10.9   1.0    1.8  1  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> Mis12  Mis12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.2   3.4e-42     2e-38       1     132 [.      15     149 ..      15     152 .. 0.94

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 3.4e-42
                 HHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH........TTSTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHCCCH CS
       Mis12   1 lltehlgftPqsliddiinavndllyravdavekvLdkkleedeeeekaaeesteeieeGtakletlleasvDknfdkfElyvlrniltipeelvewvr 99 
                 ll e lgf Pq l+ddiin++nd +++ vda+e++L+++++ ++e ++a+ + t+eie+G+  ++tlle++vD +fd+fE++++rni++ip +l   ++
  CDO72830.1  15 LLPELLGFIPQFLLDDIINIANDEAKQSVDAMEQFLQRWADARAE-KTAEWDPTQEIEQGLVSFQTLLESHVDVAFDFFEAWSMRNIFAIPADLP--IV 110
                 6889********************************999999987.99999*****************************************997..** PP

                 CCHHCCTTS......HHHHHHHHHHHHHHHHHHHHHHHH CS
       Mis12 100 Lphdeglel......eerldeeieelrrkleaelklnka 132
                  ph+ g++l      e++l  ei+elrrk++a++kl+++
  CDO72830.1 111 APHQAGFNLehppekEAELLVEIDELRRKVHAQRKLKRL 149
                 *********999865444******************986 PP

>> PLN_propep  Protealysin propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00018       1.1       3      21 ..      22      41 ..      21      43 .. 0.88
   2 ?    1.4   0.2     0.044   2.6e+02      16      26 ..     222     232 ..     218     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
  PLN_propep  3 iIPPyiLrrIidn.gdeeqR 21
                +IP ++L+ Ii+  +de+++
  CDO72830.1 22 FIPQFLLDDIINIaNDEAKQ 41
                7***********98888887 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.044
  PLN_propep  16 gdeeqRacArr 26 
                 gd ++R++A+r
  CDO72830.1 222 GDKQDREKAKR 232
                 99*******98 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   7.5e-05      0.45       4      35 ..     124     158 ..     122     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.5e-05
  Lzipper-MIP1   4 ekrssLeqeveqLqerLqeeeklrraLekal...s 35 
                   ek+++L  e+ +L+++ + ++kl+r+  +a+   +
    CDO72830.1 124 EKEAELLVEIDELRRKVHAQRKLKRLFTRAVrrsG 158
                   7899999************************4431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1892.42
//
Query:       CDO72831.1  [L=204]
Description: hypothetical protein BN946_scf185002.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.3   0.1     0.0003   20.4   0.0    2.5  2  Cupin_2   Cupin domain
  ------ inclusion threshold ------
       0.18   11.8   0.1       0.79    9.7   0.0    1.9  2  DUF4340   Domain of unknown function (DUF4340)


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.3e-08    0.0003       2      27 ..      54      80 ..      53      86 .. 0.93
   2 !    8.3   0.0    0.0002       1.8      38      65 ..     113     144 ..     106     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.3e-08
                EEEEETTE.EEEEECSSSEEEEEEEEE CS
     Cupin_2  2 lvelppGe.sapshrHpgedeffyVle 27
                l++lppG+ s+  h+H++ de++y+l+
  CDO72831.1 54 LCRLPPGAtSTTLHYHTHDDEWYYILD 80
                789*****9999*************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0002
                 EEEEETTEEEEE-TT....-EEEEEE-SSS-E CS
     Cupin_2  38 eveleaGdsvyfpag....tpHrfrNtgdepa 65 
                 e e++aGd++ f+ag    + H++r  ++e +
  CDO72831.1 113 EEEIKAGDFIGFKAGvknaRAHALRAGSTEVV 144
                 6789***********88777888887776544 PP

>> DUF4340  Domain of unknown function (DUF4340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.1     9e+02      53      75 ..      30      53 ..      16     104 .. 0.73
   2 ?    9.7   0.0   8.8e-05      0.79      62     116 ..     121     176 ..     105     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.1
     DUF4340 53 vtdad.latlyvGketpndggsyY 75
                +++ +  ++l +G++t+ ++++++
  CDO72831.1 30 IDSTNyRYSLSLGDSTGLTKTGVH 53
                456667788888888876666544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 8.8e-05
     DUF4340  62 yvGketpndggsyYvrlegdda.vylvssalaeslkkklsdwrdkdll.qldsedvt 116
                 ++G +++ ++ ++++ ++g+++ vylv+++ ++ ++ ++++++ k+++   ++ dv+
  CDO72831.1 121 FIGFKAGVKNARAHALRAGSTEvVYLVGGSRES-MDSSVYALMGKRIVvDRSEGDVQ 176
                 577777888899****************88866.9***********99655555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1509.67
//
Query:       CDO72832.1  [L=202]
Description: hypothetical protein BN946_scf185002.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-20   70.8   0.9    1.2e-19   70.3   0.9    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0022   18.3   0.1     0.0033   17.8   0.1    1.2  1  Histone        Core histone H2A/H2B/H3/H4
     0.0057   16.7   0.0     0.0099   15.9   0.0    1.3  1  TFIID-18kDa    Transcription initiation factor IID, 18kD subu
  ------ inclusion threshold ------
       0.21   11.7   0.0       0.29   11.3   0.0    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.9   2.7e-23   1.2e-19      12      65 .]       1      55 [.       1      55 [. 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.7e-23
                   HHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 12 mksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   mk + p ++ki+k+Ake+++ecv+efi++++seAae+c+ ekrKti +e+i+ A+
     CDO72832.1  1 MKAAvPPTAKISKEAKECVQECVSEFISFITSEAAEKCQMEKRKTIGGEDILYAM 55
                   999*************************************************997 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   7.4e-07    0.0033      83     128 ..      10      55 ..       7      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.4e-07
                 EEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  83 risaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                 +is+ea +++qe +  ++  +++eA+  +   KR+Ti  +Di  A+
  CDO72832.1  10 KISKEAKECVQECVSEFISFITSEAAEKCQMEKRKTIGGEDILYAM 55 
                 69****************************************9987 PP

>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0099      22      64 ..      13      55 ..       8      57 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXX CS
  TFIID-18kDa 22 qetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfli 64
                 +e+ +++++ v++++  ++ +aa+  + ++++ i  ED+l+++
   CDO72832.1 13 KEAKECVQECVSEFISFITSEAAEKCQMEKRKTIGGEDILYAM 55
                 67889************************************97 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.5e-05      0.29      27      74 ..       8      55 ..       1      80 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
    CENP-T_C 27 kaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLm 74
                 ak++kea + ++++  +f++ ++++ +   +  +RKti  +D++  m
  CDO72832.1  8 TAKISKEAKECVQECVSEFISFITSEAAEKCQMEKRKTIGGEDILYAM 55
                579*****************************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1478.62
//
Query:       CDO72833.1  [L=535]
Description: hypothetical protein BN946_scf185002.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0034   17.3   2.3     0.0034   17.3   2.3    2.2  2  eIF3_subunit  Translation initiation factor eIF3 subunit


Domain annotation for each model (and alignments):
>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.3   1.9e-07    0.0034      73     125 ..     173     239 ..     165     269 .. 0.73
   2 ?    0.2   0.5     0.032   5.7e+02      34      58 ..     477     499 ..     451     509 .. 0.49

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-07
  eIF3_subunit  73 iaekeerrkaeeeeaeeeeeleeedeaarkerlrkaeeesDlknaadlFGgv...............a 125
                   i+e   +++++e++a+eeee  +++e+ r++r+++a + + +++a +l +g+               +
    CDO72833.1 173 IQELS-AARQAEARAREEEERRAKEEQRRRRREKRALKRAAMAHALELHAGAneefegfqgsgpafdQ 239
                   45555.556667788888999999999*********************99886666555555555542 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.032
  eIF3_subunit  34 kdswdaeeeeeeekekakkaaeaka 58 
                   +++ d+  e e+e e  +k+ +++a
    CDO72833.1 477 AEDADE--EAEVEAERVRKERPRAA 499
                   333333..33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1413  (0.0788109); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 3585.25
//
Query:       CDO72834.1  [L=142]
Description: hypothetical protein BN946_scf185002.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1158.32
//
Query:       CDO72835.1  [L=263]
Description: hypothetical protein BN946_scf185002.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1724.44
//
Query:       CDO72836.1  [L=602]
Description: hypothetical protein BN946_scf185002.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-143  478.3   7.9   2.2e-143  477.9   7.9    1.1  1  Peptidase_M36   Fungalysin metallopeptidase (M36)
    7.6e-09   35.3   0.3    2.2e-08   33.8   0.3    1.9  1  FTP             Fungalysin/Thermolysin Propeptide Motif
    1.1e-05   25.9   1.1    5.1e-05   23.7   0.4    2.3  2  PepSY           Peptidase propeptide and YPEB domain
    0.00023   21.1   0.0    0.00081   19.3   0.0    1.9  2  Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical d


Domain annotation for each model (and alignments):
>> Peptidase_M36  Fungalysin metallopeptidase (M36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.9   7.9  4.8e-147  2.2e-143       1     371 []     231     589 ..     231     589 .. 0.93

  Alignments for each domain:
  == domain 1  score: 477.9 bits;  conditional E-value: 4.8e-147
                    EEEE--TT--SGGG---EEEE--S-TTTTTT-TTB-S.S-B..-SBSBSSSEEEEE-TT-S--T--....B-TT.-EE-----TT-SS.GGGGHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Peptidase_M36   1 sYkvfplgvedpsegerelvtdpedkeaSplgWhdteakakaettttrGNNvlaqedsegsnllrpgssadsgaelkfdypysekeee.pkkyada 95 
                    sY v+p+ +e  + +++++++dp+d+++Sp gWh+++++   +tttt GNN++a++ s++s      ++ +s++ l+f+yp +++++   + +++a
     CDO72836.1 231 SYLVLPIFKEILT-QGFQTLVDPQDTTSSPDGWHSDGTT---TTTTTAGNNAIAYKGSQSS------TTSQSSSGLVFNYPNNPNQQPtTTANVNA 316
                    5888888666555.789999***************8844...58************98553......33468899*********66540445569* PP

                    HHHHHHHHHHHHHHHHHHTT--TTTT---S--TTSSS--S--EEEEET-TT-SS-EEEE--STTS-EEEEE-EE-SSSS-EEGGG-HHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36  96 avtnlFYtnnlihDllyryGFdEaagNFqqnnfgkggkgnDaviaeaqdgsgtnnAnfatppDGqkgrmrmylwtkakparDgdldngiviHEytH 191
                    a +n+FY++n+ihD++y+yGF+E+a NFq+nnfgkggkgnD+v++++qd+sgt+nA f+tppDGq+g+mrm+lw+ ++p+rDg+l+n+i+ HE tH
     CDO72836.1 317 ARVNAFYIVNTIHDITYHYGFTESAFNFQNNNFGKGGKGNDRVLVSVQDSSGTDNADFTTPPDGQSGQMRMFLWDLTNPERDGALENDIISHENTH 412
                    ************************************************************************************************ PP

                    HHHHHHTT-TT---TT-SHHHHHHHHHHHHHHHHHHH--T--T.T--B-SSHHHHT-TT-SSSS-B-S-TTT----GGGG.GG--SHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36 192 GlsnRLtGgpanssclqtkesggmgEGwsDflallltlkeddeaekdrgigtyaanqpkgiRkypYstdltvnpltYkdlkeelsevhaiGevWae 287
                    Gl+nRLtGg  + +clqt+e+gg+gEGwsD++a +++ ++++    d+++g+y++++p+giR++pYst++tvnpl+Y+++k +l+evh+iGevWa+
     CDO72836.1 413 GLTNRLTGG-GTGRCLQTTEAGGLGEGWSDAFADWVEKTDAT--VPDYVLGQYVTDDPAGIRTHPYSTSATVNPLRYSSVK-QLNEVHNIGEVWAN 504
                    *********.9*************************997744..69**********************************7.************** PP

                    HHHHHHHHHHHHH-----EETT.EESSHHHHHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHHSSTTHHHHHHHHHHTTBSTT- CS
                    xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M36 288 iLwevtwalidkhGfsadlkke.vpkeGnnlalqlvldglklqpcnptfvdaRdAilaAdealtggenkcliwkaFAkrGlGvsA 371
                    iL++v++al+++hGfs++++++ + +eGn+++++l++d+l lqpcnptf +aRdA+++Ad+++++g+nkc++w+aFA+rGlGv+A
     CDO72836.1 505 ILHNVYAALVQAHGFSTTARTDaTGSEGNVVFFHLFVDALPLQPCNPTFTSARDAWIQADQNRYNGANKCILWNAFASRGLGVNA 589
                    ******************998878888********************************************************98 PP

>> FTP  Fungalysin/Thermolysin Propeptide Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.3     5e-12   2.2e-08      15      51 .]     104     140 ..      91     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 5e-12
                 -EEEEEEEEETTEEEEEEEEEEEE-TTSSEEEEEE-- CS
         FTP  15 ttHvryqQtynGipVfggdlvvhvdkdGkvtsvngsf 51 
                   Hv+++Q+ nGip +++  +v v+kd+kv+++++sf
  CDO72836.1 104 AGHVYLKQKLNGIPFANAVANVAVNKDNKVVAFGNSF 140
                 57*********************************98 PP

>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   1.1e-08   5.1e-05       2      62 ..     155     223 ..     154     224 .. 0.75
   2 ?   -0.4   0.0      0.39   1.8e+03      41      54 ..     530     543 ..     519     543 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.1e-08
                 S-HHHHHHHHHHH..........STTEEEEEEEEEEETTEEEEEEEEE.EE.TTEEEEEEEETTT--EEEE CS
       PepSY   2 iseeqAlaiAlaa..........vpgkiieielededdgrlvYevelstaepegpeyevfiDAkTGkvlkk 62 
                 i  e+A+a+A+++           + +i +   +d+  + l Y v+++ ++  g+ ye f+DA++G+ +++
  CDO72836.1 155 IKVEDAVAAAEKHlkgtfeseefPEPTIEYFAKDDG-SAALTYVVQVR-NDTAGTWYEAFVDAHSGDLVSV 223
                 5679******99955555444422333555555555.***********.6888888**********99875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.39
                 EE.TTEEEEEEEET CS
       PepSY  41 aepegpeyevfiDA 54 
                 +e+++ +++ f+DA
  CDO72836.1 530 SEGNVVFFHLFVDA 543
                 789999*******9 PP

>> Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.62   2.8e+03      51      74 ..     243     266 ..     203     293 .. 0.71
   2 !   19.3   0.0   1.8e-07   0.00081       7     163 ..     430     580 ..     428     585 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.62
  Peptidase_M4_C  51 gdalRsmsnPssdgsspdhykkyv 74 
                      +++  + +P+ + sspd ++++ 
      CDO72836.1 243 TQGFQTLVDPQDTTSSPDGWHSDG 266
                     466677778888888888887762 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.8e-07
  Peptidase_M4_C   7 gesGAlnEslSDifgalveqyakkknadekdwliGeeivtpkskgdalRsmsnPssdgsspdhykky..vateednggvHlnSgilnkafyllae 99 
                      e+G+l E++SD f+  ve+  +       d+++G+ ++    +  ++R   + +s+  +p  y++   +++ ++ g+v  n    n  + l+  
      CDO72836.1 430 TEAGGLGEGWSDAFADWVEKTDA----TVPDYVLGQYVTD---DPAGIRTHPYSTSATVNPLRYSSVkqLNEVHNIGEVWAN-ILHNVYAALVQA 516
                     699************99965554....567******9966...4579****9999999999999988434445555555554.567777777777 PP

  Peptidase_M4_C 100 ggtktevkvtgi...giekaakiyyraltkyltsttdFaeartaviqaAkdlygaksaevkavkkAf 163
                      g +t+ +++     g    ++++++al      + +F++ar+a iqa ++ y+  +a++    +Af
      CDO72836.1 517 HGFSTTARTDATgseGNVVFFHLFVDALP-LQPCNPTFTSARDAWIQADQNRYN--GANKCILWNAF 580
                     77555555554400145556788888887.3345679***************98..55555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.34s 00:00:01.10 Elapsed: 00:00:00.57
# Mc/sec: 3180.53
//
Query:       CDO72837.1  [L=248]
Description: hypothetical protein BN946_scf185002.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-11   43.3   1.7    5.7e-11   42.4   1.0    1.8  2  DDE_3      DDE superfamily endonuclease
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.33   11.4   0.0    1.9  1  EF-hand_7  EF-hand domain pair


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   1.0   6.4e-15   5.7e-11      67     139 ..      14      85 ..       2      92 .. 0.86
   2 ?   -1.5   0.0      0.22   1.9e+03     122     137 ..      88     103 ..      80     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 6.4e-15
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsf 139
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + 
  CDO72837.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRP 85 
                 5677888888888999999*****************..****************************99844455 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.22
       DDE_3 122 iEivwsklkrellkrr 137
                  E++w+++++ ++ rr
  CDO72837.1  88 TEELWRVVQKLWQGRR 103
                 5999***999999866 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.7e-05      0.33      35      71 .]     148     197 ..     113     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
   EF-hand_7  35 a.............gegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 a               g ++++   e++++ +D + dG ++f  F++ y+
  CDO72837.1 148 AyltsegldswardTNGAPFDEATKEEILEFMDVTEDGGLTFKGFMQVYQ 197
                 044444445555557888888888899********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1777.48
//
Query:       CDO72838.1  [L=316]
Description: hypothetical protein BN946_scf185002.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-07   30.2   0.0      0.021   14.6   0.0    2.1  2  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-06     0.021      42     108 ..     108     176 ..      96     185 .. 0.85
   2 !   13.5   0.0   2.4e-06     0.044     119     151 ..     210     242 ..     202     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-06
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnkn...alkskvkvevLdWg 108
                      a++l+ l vl L +G  l  la+a++  + +vi tDl++ +  +l +ni+ n       + +v+v+v dW 
       CDO72838.1 108 AADLRSLLVLRLSAGPLLSSLALASM--GWDVIATDLPDvVSSVLSHNIARNLPqlpPDSGTVQVRVFDWT 176
                      5667888999****************..**********9667899******88755456789********5 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.4e-06
  Methyltransf_16 119 eevDlilaaDcvYledslelLvkvLkellkkes 151
                       ++Dl++ +D +Y ++ + +L++ L+ +++++ 
       CDO72838.1 210 PPFDLVITSDTIYSAELVMPLLRALRGICDTSL 242
                      479**********************99998763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.37s 00:00:00.97 Elapsed: 00:00:00.57
# Mc/sec: 1676.69
//
Query:       CDO72839.1  [L=1066]
Description: hypothetical protein BN946_scf185002.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-19   69.3   0.3    1.4e-14   54.7   0.1    2.2  2  RhoGEF    RhoGEF domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.8e-06      0.12       1      29 [.     280     308 ..     280     324 .. 0.87
   2 !   54.7   0.1     8e-19   1.4e-14      47     181 ..     528     674 ..     493     675 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplse 29 
                 v++E++ +E+ Yv++L  + e +++pl +
  CDO72839.1 280 VLWEIVASEERYVNELLKMKETFIEPLLH 308
                 79**********************99874 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 8e-19
                 HHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHCHHHHHHHHHH............HHHHHHHHHHHHHHHHTSGGG...... CS
      RhoGEF  47 eilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYseYcsnypnalkllke............lskknkkfkafleeaeerpec...... 127
                  il+ h   l e L++r+  +e+    +s++dvf ++a+ ++ Y++Y+ + ++al+ +++            +    ++  ++++ ++  +++      
  CDO72839.1 528 GILDGH-IRLSEGLRKRY--EEQYPLVRSLADVFVSNAHILHGYATYVLHLERALEQVDNalstasaskkpkK----QDADQWIKVCQYLQKLevtase 619
                 477888.88889999999..47777899**********99999***********************9965541....4444444444444444444555 PP

                 .TT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF 128 .skldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevasei 181
                  ++  L   L+kP+qRl++YpLL+++ll +t++s  +ye   +++ ++++++++i
  CDO72839.1 620 kGETGLAISLSKPFQRLLKYPLLFQNLLYHTDPSTFEYESTLQMVAEVETIVRSI 674
                 599***********************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.53
# Mc/sec: 6066.05
//
Query:       CDO72840.1  [L=597]
Description: hypothetical protein BN946_scf185002.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-96  323.9   0.0    7.9e-57  193.5   0.0    2.1  2  Asn_synthase  Asparagine synthase
    1.2e-35  122.1   0.0    1.8e-35  121.5   0.0    1.3  1  GATase_7      Glutamine amidotransferase domain
    8.1e-30  103.8   0.0    1.5e-29  102.9   0.0    1.5  1  GATase_6      Glutamine amidotransferase domain
     0.0031   17.0   0.0     0.0059   16.1   0.0    1.4  1  DUF3700       Aluminium induced protein
  ------ inclusion threshold ------
      0.035   13.2   0.0      0.059   12.5   0.0    1.3  1  NAD_synthase  NAD synthase
      0.064   12.7   0.0       0.11   12.0   0.0    1.3  1  QueC          Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.5   0.0   2.7e-60   7.9e-57       2     142 ..     221     399 ..     220     403 .. 0.99
   2 !  129.5   0.0   7.6e-41   2.3e-37     203     334 ..     400     562 ..     397     575 .. 0.94

  Alignments for each domain:
  == domain 1  score: 193.5 bits;  conditional E-value: 2.7e-60
  Asn_synthase   2 lrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsk......................................splktFsigfeekgsdea 60 
                   lre Le+aV++rl+++vp+G+lLSGGlDSSlia++aar+++                                      ++l++Fsig+  + s+++
    CDO72840.1 221 LRESLEEAVRKRLMSEVPYGVLLSGGLDSSLIASIAARETEkvaqaqaearkrklaesrsgpptpgefdvdetvtitswPQLHSFSIGL--ENSPDL 315
                   79***************************************************************************************..****** PP

  Asn_synthase  61 kyakevaehlgtehtelvlteeelldalpdviyhlee..pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaa 142
                    +a+++a  lgt h+e+ +t++e+lda+pdviyhle+  +++ r+++p+yllsr++k++gvk+vLsGeG+DE+fgGY+yf+ a+
    CDO72840.1 316 LAARKAAHFLGTVHHEYTFTVQEGLDAIPDVIYHLETfdVTTVRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAP 399
                   *********************************************************************************998 PP

  == domain 2  score: 129.5 bits;  conditional E-value: 7.6e-41
  Asn_synthase 203 gedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrg.............gieKyiLRealeg......ylPeei 280
                   + + +h+e++ ++k+l++ d+lr+++++ma+glEaRvPflD++++eva++++p++k+ +             + eKyiLR+a++       ylP++i
    CDO72840.1 400 DPKSFHQECVKRVKNLHTADCLRANKSTMAWGLEARVPFLDKAFLEVAMNIDPKEKMFSkgseqefdadgcpRMEKYILRKAFDCspdgkpYLPRSI 496
                   5689*******************************************************************************86666777****** PP

  Asn_synthase 281 leRpKegfsapvgewklkgelrelaeellsds.............rlakeglldreaveelleehea 334
                   l+R+Ke+fs++vg+++++ +++++a+  +sd+             + +keg++ r++++ l++  +a
    CDO72840.1 497 LWRQKEQFSDGVGYSWID-GMKDHAASVVSDEafakraerwpdntPDTKEGYFIRDIFDSLFPPAAA 562
                   *****************9.*******************************************87777 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0   6.1e-39   1.8e-35       1     122 [.      47     169 ..      47     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 6.1e-39
    GATase_7   1 hrrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeek..rlllaRDrl 97 
                 h+rl+i+ +++gaQP+v s dg++++++nGeiyN+++lr +L+++ ++f+t+sD+ev++ l+++   +++++ l+Gmf+f+++de+    r+++aRD++
  CDO72840.1  47 HERLAIVGVDTGAQPLV-STDGKIILAVNGEIYNHHKLRGQLKHQ-YKFKTHSDCEVIIPLYQE-MDKDLCNLLDGMFSFVLLDESVTpsRIIAARDPI 142
                 89***************.79**********************875.9***************97.99*****************887667********* PP

    GATase_7  98 GikPLyygedk..gdallfaSelkall 122
                 Gi+ Ly g+++   +a +faSelkal+
  CDO72840.1 143 GITTLYQGWSSqrPGATFFASELKALT 169
                 *********9977459*********97 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   5.1e-33   1.5e-29       1     134 []      32     164 ..      32     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 5.1e-33
    GATase_6   1 pdasglaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafa 99 
                 pd sg   + +++++laH Rlaivg +   gaqP++s+dg+++l++NGeiyn+++lr +l+   +++f+++sD+ev++ l++e+++++ + l+Gmf+f+
  CDO72840.1  32 PDWSGC--YSGKQTILAHERLAIVGVD--TGAQPLVSTDGKIILAVNGEIYNHHKLRGQLKH--QYKFKTHSDCEVIIPLYQEMDKDLCNLLDGMFSFV 124
                 677888..88999*************8..999*****************************8..*********************************** PP

    GATase_6 100 iwdk..rentlilardrlgvkplyyavd...esglafase 134
                 + d+  +++++i ard +g+ +ly++ +    +++ fase
  CDO72840.1 125 LLDEsvTPSRIIAARDPIGITTLYQGWSsqrPGATFFASE 164
                 ***99899999999***********999777777888887 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     2e-06    0.0059     126     204 ..     114     196 ..      62     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-06
     DUF3700 126 vkdleGkfafvlydska..ktvfvaldadgsvply..WGiaadgsvvisddlelvkksCgksfapfPkGclftse.gGLksfeh 204
                  + l+G f+fvl d++   + +++a+d  g   ly  W  +  g   ++ +l+ +++ C k + +fP G ++ s  +  + + +
  CDO72840.1 114 CNLLDGMFSFVLLDESVtpSRIIAARDPIGITTLYqgWSSQRPGATFFASELKALTDLCDKII-SFPPGNVYDSRdQSTTRYYN 196
                 56699*********975237899************444455569***************9975.7*******986355555555 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05     0.059       5      41 ..     221     259 ..     218     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
                   HHHHHHHHHHHCTTSEEEEE..E-SSHHHHHHHHHHHHH CS
  NAD_synthase   5 lvdflkeyvkkagakgvvlG..lSGGvDSslvaalavka 41 
                   l ++l+e v+k+ +++v +G  lSGG+DSsl+a +a + 
    CDO72840.1 221 LRESLEEAVRKRLMSEVPYGvlLSGGLDSSLIASIAARE 259
                   56789999*********999777***********99765 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05      0.11       4      41 ..     241     278 ..     240     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
                 EE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHH CS
        QueC   4 vllSGGlDSttvlalakkegkevealtfdYgqrhkkel 41 
                 vllSGGlDS+ ++ +a +e ++v+  + +  +r+ +e 
  CDO72840.1 241 VLLSGGLDSSLIASIAARETEKVAQAQAEARKRKLAES 278
                 79*********************988877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4071.17
//
Query:       CDO72841.1  [L=344]
Description: hypothetical protein BN946_scf185002.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-57  194.2   0.0    3.2e-57  194.0   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
     0.0054   16.3   0.0     0.0099   15.5   0.0    1.3  1  PrpR_N        Propionate catabolism activator


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0   3.5e-61   3.2e-57      14     293 ..      34     321 ..      26     322 .. 0.96

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 3.5e-61
                   TS-HHHHHHHHHHHHHT...T--.EEE--TT-...TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-.S-E CS
  Aldo_ket_red  14 eiskeealellrralea...Gin.ffDtAevY...gkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgt.dyv 102
                   + ++eea+e++++ ++a   G++ f++++e+Y   g + + ell+++ +k+++  e  +++ K+++   +  ++ s+en+r+s +++   L+  ++v
    CDO72841.1  34 PLPDEEAFEAIKAGVDAmpqGVKmFLNSGEFYgpnGSTANLELLARFYEKYPEYAERTFLSVKGGGKENSFVPDSSPENLRRSADKINAVLRGtKRV 130
                   67899999999987776444888888******99999999999************************************************987*** PP

                   EEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTG CS
  Aldo_ket_red 103 DllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkgvpliaysplggGllt 198
                   Dl++++r+  ++p ie+++++l++l+keGk  +iG S+ s++ l++a   ++++i+av++e +l+  e+e ++++e++k++g+++iaysplg+G+lt
    CDO72841.1 131 DLFECARVAKNVP-IEDAIRTLAQLKKEGKFDHIGMSECSAATLKRA--NAVHPIAAVEIEVSLWsYEEETKKVIETAKELGIAVIAYSPLGRGFLT 224
                   *************.*******************************99..************************************************ PP

                   TTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHHH CS
  Aldo_ket_red 199 gkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldell 293
                   g  +s++d +++++r+++ r+  e+++ nl  +e+++++a+++gv++aql+++++ s+ + +i++pg+s+ ++  +n++  +++l++ ++ae+de++
    CDO72841.1 225 GAIKSPDDLPPQDMRRHFSRFqgENFKHNLAIVEAVKAIAAKKGVTPAQLCIAWVASRGPHVIPLPGSSSKKRNLENIAGGNIELTDADLAEIDEII 321
                   ******************999**************************************************************************96 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-06    0.0099      56     123 ..     143     213 ..     138     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-06
      PrpR_N  56 sgyDilralkqakklge..kialvgfen.iikglktlselldldieiytinseeeaeaavkelkaegvevv 123
                  + D +r l+q+kk+g+  +i++   +  ++k ++ +  +  ++ie+  ++ eee +++++++k+ g+ v+
  CDO72841.1 143 PIEDAIRTLAQLKKEGKfdHIGMSECSAaTLKRANAVHPIAAVEIEVSLWSYEEETKKVIETAKELGIAVI 213
                 578*************54599999998889999999********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2410.34
//
Query:       CDO72842.1  [L=346]
Description: hypothetical protein BN946_scf185002.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-60  202.5   0.0    9.1e-60  202.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.061   12.9   0.0       0.13   11.9   0.0    1.4  1  PrpR_N        Propionate catabolism activator


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.0     1e-63   9.1e-60       2     293 ..      21     323 ..      20     324 .. 0.95

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 1e-63
                   EEEE-SSS-ST....TS-HHHHHHHHHHHHH...TT--.EEE--TT-...TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk...eeiskeealellrrale...aGin.ffDtAevY...gkgqseellGealkksrkkreeviiatKvdlrdaeiksglskenire 88 
                   +  G+++++++    + ++eea+e++++ ++   +G++ f++++e+Y     + + ell+++ +k+++  e  +++ K+++   +  ++ s+en+r+
    CDO72842.1  21 VAHGLMMMTWRdpnVPLPDEEAFEAIKAGVDampHGVKmFLNSGEFYgpnASTANLELLARFYEKYPEYVERTFLSVKGGNKENSLVPDASPENLRR 117
                   5679999999999999*********9986652227999888******665566778889999999******************************** PP

                   HHHHHHHHHT-.S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT CS
  Aldo_ket_red  89 sleeslkrLgt.dyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkg 183
                   s++++   L+  ++vDl++++r+d ++p ie+++++l++l+keGk  +iG S+ s++ l++a   ++++i+av++e +l+  e+e ++++e++k++g
    CDO72842.1 118 SVDKINTVLRGtKRVDLFECARVDDKVP-IEDTIKTLVQLKKEGKFDHIGMSECSAATLRRA--NAVHPIAAVEIEVSLWsYEEETKKVIETAKELG 211
                   *********987****************.*******************************99..********************************* PP

                   -EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG CS
  Aldo_ket_red 184 vpliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldale 278
                   +++iaysplg+G+ltg  +s+++  ++++r+++ r+  e+++ n+  +e+l+ +a+++g+++aql+++++ s+ + +i++pg+s+ ++  +n++a +
    CDO72842.1 212 IAVIAYSPLGRGFLTGSIKSPDNLAPQDMRRHFSRFqeENFKHNMAIVEALKVVAAKKGITPAQLCIAWVASRGPHIIPLPGSSSKQRNLENIAAGN 308
                   *********************************999************************************************************* PP

                   ----HHHHHHHHHHH CS
  Aldo_ket_red 279 lklseeevaeldell 293
                   ++l++ e+ae+de+l
    CDO72842.1 309 IELTAAELAEIDEIL 323
                   *************96 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.4e-05      0.13      55     123 ..     144     215 ..     139     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.4e-05
      PrpR_N  55 vsgyDilralkqakklge..kialvgfen.iikglktlselldldieiytinseeeaeaavkelkaegvevv 123
                 v + D ++ l q+kk+g+  +i++   +  +++ ++ +  +  ++ie+  ++ eee +++++++k+ g+ v+
  CDO72842.1 144 VPIEDTIKTLVQLKKEGKfdHIGMSECSAaTLRRANAVHPIAAVEIEVSLWSYEEETKKVIETAKELGIAVI 215
                 667899**********954499999998879999999********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2491.25
//
Query:       CDO72843.1  [L=323]
Description: hypothetical protein BN946_scf185002.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-31  108.8   7.4    5.1e-31  107.9   7.4    1.5  1  Syntaxin         Syntaxin
      5e-10   39.2   0.1    1.5e-09   37.7   0.1    1.9  1  SNARE            SNARE domain
    8.1e-09   35.8   4.8    8.1e-09   35.8   4.8    2.6  2  Syntaxin_2       Syntaxin-like protein
     0.0013   17.4   3.1     0.0013   17.4   3.1    2.9  4  FUSC             Fusaric acid resistance protein family
      0.004   15.2   1.6      0.022   12.7   0.0    2.0  2  Prominin         Prominin
  ------ inclusion threshold ------
      0.019   13.8   0.5        0.2   10.4   0.5    2.1  1  DUF2207          Predicted membrane protein (DUF2207)
      0.033   14.1   0.0      0.063   13.2   0.0    1.5  1  SF3a60_bindingd  Splicing factor SF3a60 binding domain
      0.037   13.8   2.1       0.12   12.2   0.2    2.6  2  Synaptobrevin    Synaptobrevin
      0.046   13.5   4.5      0.058   13.2   0.8    2.7  2  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si
      0.094   12.7   0.0       0.19   11.7   0.0    1.5  1  NDK              Nucleoside diphosphate kinase
       0.13   12.3   0.0       0.42   10.6   0.0    1.8  1  VitD-bind_III    Vitamin D binding protein, domain III
        0.8   10.4   0.1        0.8   10.4   0.1    2.7  2  ACC_epsilon      Acyl-CoA carboxylase epsilon subunit
        6.6    6.8  19.3      0.054   13.6   2.8    2.8  3  Mod_r            Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   7.4   3.7e-34   5.1e-31       1     199 [.      55     252 ..      55     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 3.7e-34
    Syntaxin   1 leeffkeveeikkeiekleeevkklkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrk 98 
                 + +f+++v +i++ i + +++v+++ + ++++++st++ +++      e++ ++   + +++ ++L+   +++++  + +   + ++ irk qta Lr+
  CDO72843.1  55 MANFYNQVTSIQDGIGQFSSNVSRIADLHSRTLNSTDEGASRqS----EALLDDLVGQTRQLSSELK---ERIQALASYPVTRAQDQVIRKNQTALLRQ 146
                 789**************************************444....5555555555555555443...33344444444455667799********* PP

    Syntaxin  99 klkevmteynelrekireeykerieRrlevtGkevseeeieelietge...sevflqkllqeq.rga.realseieeRhkevlelekslkeLhqlFldm 192
                 k+ ev+++y++++ + r++y++r+eR++ ++  ++s ee+  ++++ e    ++f+q l + +  g+ r a +e+++Rh++++++e+ l+eL qlF dm
  CDO72843.1 147 KFVEVLQNYQQVERDYRQKYRQRVERQFRIVKPDASPEEVAAVVNDTEgagAQIFTQALSSSTrYGEsRMAYREVQDRHNDIKRIERTLEELAQLFNDM 245
                 ********************************************976655566777777777755679******************************* PP

    Syntaxin 193 avLVEeQ 199
                 +vLV +Q
  CDO72843.1 246 SVLVAQQ 252
                 ****999 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   1.1e-12   1.5e-09       1      52 [.     254     305 ..     254     306 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.1e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvv 52 
                 e +D I t   n++ +++++ +++ kav++++s+R++ +i++++++ i+ ++
  CDO72843.1 254 EAIDQIQTLAGNVEADTRAGLQQTEKAVEHARSARRKRWICFGLFLTIIAIL 305
                 5699*********************************************987 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   4.8   5.9e-12   8.1e-09       2     100 ..      66     169 ..      65     170 .. 0.90
   2 ?    2.8   0.6      0.11   1.5e+02      36      67 ..     225     258 ..     199     291 .. 0.53

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 5.9e-12
  Syntaxin_2   2 ssnlqkinsnvstleklvkqLgtkkd...teelreklhelieeinelikktnellkklsqldnsssds..qqklqkekLkkdfkealqeFqkiqrqyae 95 
                 ++ + +++snvs +  l +   +++d   +++    l++l+ ++++l+++ +e+++ l++++ +  ++   +k q + L+++f e+lq++q++ r+y++
  CDO72843.1  66 QDGIGQFSSNVSRIADLHSRTLNSTDegaSRQSEALLDDLVGQTRQLSSELKERIQALASYPVTRAQDqvIRKNQTALLRQKFVEVLQNYQQVERDYRQ 164
                 67799***************66665645588888889**************************99887899999************************* PP

  Syntaxin_2  96 kekqi 100
                 k +q 
  CDO72843.1 165 KYRQR 169
                 *9986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
  Syntaxin_2  36 helieeinelikktnellkklsqldnsssds..q 67 
                 h+ i++i +++++  +l++++s l  +++    q
  CDO72843.1 225 HNDIKRIERTLEELAQLFNDMSVLVAQQDEAidQ 258
                 4444555555555555555555555544433322 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   2.3       3.5   4.9e+03     537     555 ..       4      21 ..       2      31 .. 0.46
   2 !   17.4   3.1   9.3e-07    0.0013     224     331 ..      68     177 ..      55     209 .. 0.73
   3 ?    2.0   2.4     0.042        58     211     269 ..     228     284 ..     203     294 .. 0.61
   4 ?   -1.7   0.0      0.57   7.8e+02       8      25 ..     299     316 ..     292     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3.5
        FUSC 537 drlaqllprlaaapparre 555
                 drlaq  +r++++++++ +
  CDO72843.1   4 DRLAQHRARQQQQQQQQ-Q 21 
                 55555555554222222.2 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 9.3e-07
        FUSC 224 llsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslr 322
                   +++ + ++++  l+++  +  +e+a ++   +all++l   + ++++++l+++++al        +++  + ++ all + ++e+l++++q+ +++r
  CDO72843.1  68 GIGQFSSNVSRIADLHSRTLNSTDEGASRQ--SEALLDDLVG-QTRQLSSELKERIQALASYPVTRAQDQVIRKNQTALLRQKFVEVLQNYQQVERDYR 163
                 556777888888888888877777777775..6677777777.5555888899999988776544444444689999********************** PP

        FUSC 323 aleaaiaa.....a 331
                 +  +++++      
  CDO72843.1 164 QKYRQRVErqfriV 177
                 **999997433330 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.042
        FUSC 211 sprirararalrrllsrmlallallsslarllarlraeeaaavpe.laallaelaaleaa 269
                   ri ++ + l++l ++m  l+a+ ++  ++ ++l  + +a +++ l+++ +++++   a
  CDO72843.1 228 IKRIERTLEELAQLFNDMSVLVAQQDEAIDQIQTLAGNVEADTRAgLQQTEKAVEH---A 284
                 45566666666666666666666666666666666666665533334443333333...2 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.57
        FUSC   8 tllAalLALyiAlrleLp 25 
                 +++ a LAL+++l+++L 
  CDO72843.1 299 LTIIAILALVLGLYFGLR 316
                 6788999******99995 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.6     0.037        50     668     739 ..      97     171 ..      52     194 .. 0.51
   2 !   12.7   0.0   1.6e-05     0.022     359     450 ..     226     321 ..     197     323 .] 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.037
    Prominin 668 plessvkklkksvkkldeensdlqesikklla.averaen.flkkngseiinn....eskklldrileqfeeYidwvi 739
                 + e+++++l  ++    + +s+l+e+i+ l +  v+ra++  ++kn +  +++    + +++ +++  + ++Y + v 
  CDO72843.1  97 QSEALLDDLVGQT---RQLSSELKERIQALASyPVTRAQDqVIRKNQTALLRQkfveVLQNYQQVERDYRQKYRQRVE 171
                 2222222222222...22344566666666542355555414556665555541111334444444445555544444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.6e-05
    Prominin 359 evvpdlkkalakgreqikklakkip.realdavisdle.nterssktfddvvek.yekyrwliglivcsllllivvililgLlcGi.lGlsrtatp 450
                 + ++ + ++l++  + +++++  +  ++ + + i++l  n+e ++++ +++ ek +e+ r++     +++ l+  +i il+L++G  +Gl++t+++
  CDO72843.1 226 NDIKRIERTLEELAQLFNDMSVLVAqQDEAIDQIQTLAgNVEADTRAGLQQTEKaVEHARSARRKRWICFGLFLTIIAILALVLGLyFGLRNTGSS 321
                 446788899999999999999888776666667888888*******9999999835888888888777777778889999****964788888765 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00014       0.2     244     403 ..     169     312 ..     141     319 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
     DUF2207 244 evdpeYerdvPedlsPavvgylvkgdkvdengltAtlldLavkgyitieeekkkkkkgkdtltilkkndeeldpyEkal..ldlLfdkseegkslkeik 340
                 +v+++++   P d sP +v+++v++    ++g  A ++  a     +  e  +         + +++   + +++E++l  l  Lf+++          
  CDO72843.1 169 RVERQFRIVKP-DASPEEVAAVVND----TEGAGAQIFTQALSSSTRYGESRMAY-------REVQDRHNDIKRIERTLeeLAQLFNDM---------S 246
                 33666665666.7777777777775....23344444444444444433333332.......223333344567777775555555222.........2 PP

     DUF2207 341 kyakkskkkakkfkkalkkwksavkk.......kergyfdkkgkkklkklsalglgliilglilillall 403
                   +      +++  ++++ ++ +v++       ++++  + + ++++k+++ +gl+l+i+++++++l+l+
  CDO72843.1 247 VLVA----QQDEAIDQIQTLAGNVEAdtraglqQTEKAVEHARSARRKRWICFGLFLTIIAILALVLGLY 312
                 2222....23333333333333333333335554445555555666666666666666666666655543 PP

>> SF3a60_bindingd  Splicing factor SF3a60 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.6e-05     0.063       3      20 ..      50      67 ..      48      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
  SF3a60_bindingd  3 sggDpFseFYkrLkeIKd 20
                     +g Dp ++FY++  +I+d
       CDO72843.1 50 GGADPMANFYNQVTSIQD 67
                     699*************98 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.68   9.4e+02      30      45 ..      99     114 ..      66     118 .. 0.68
   2 ?   12.2   0.2   8.8e-05      0.12       3      85 ..     226     308 ..     224     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.68
                    CCCHHHHCCCCHHHHH CS
  Synaptobrevin  30 gekldeLvdktenLqs 45 
                    +  ld+Lv +t +L+s
     CDO72843.1  99 EALLDDLVGQTRQLSS 114
                    3447788888887766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.8e-05
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiii 85 
                    + +++i++ ++e  ++ ++    v + +e +d++++ + n ++ +++  +q+ k  ++    + k +i+++l ++i+ ++ ++
     CDO72843.1 226 NDIKRIERTLEELAQLFNDMSVLVAQQDEAIDQIQTLAGNVEADTRAGLQQTEKAVEHARSARRKRWICFGLFLTIIAILALV 308
                    7899*****************************************99888888888888888888888888888777776654 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.91   1.3e+03      11      33 ..      95     117 ..      84     144 .. 0.65
   2 ?   13.2   0.8   4.2e-05     0.058     108     168 ..     204     266 ..     177     270 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  11 Aeeggkevanvvkqmeeiekssk 33 
                  ++++  +++ v+q+++++++ k
  CDO72843.1  95 SRQSEALLDDLVGQTRQLSSELK 117
                 34456667777777777766533 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.2e-05
                 ..HHHHH..HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 108 sleetrq..rveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveev 168
                 +l+++++  +   +  +v++ ++++k+i  + +e+a+l +++++ +++q ++i+++++   +v
  CDO72843.1 204 ALSSSTRygESRMAYREVQDRHNDIKRIERTLEELAQLFNDMSVLVAQQDEAIDQIQTLAGNV 266
                 4444433114445678999*************************************9866555 PP

>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.19       1      94 [.     171     270 ..     171     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HH.HHHHHTGGGTTST........THHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--S CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrltee.qaeehYaehkgkp........ffeelvefmtsgpvvalvlegedaiekvreliGat 90 
                 er + ++KPda   + + +++++ e +g +i ++ +   t+  + +  Y+e ++++          eel +  +   + +lv ++++ai+++++l+G+ 
  CDO72843.1 171 ERQFRIVKPDASP-EEVAAVVNDTEGAGAQIFTQALSSSTRYgESRMAYREVQDRHndikrierTLEELAQLFND--MSVLVAQQDEAIDQIQTLAGNV 266
                 78899******96.67999*************9999888875255558888777764444333344444444444..9999****************99 PP

                 STTT CS
         NDK  91 npae 94 
                 +   
  CDO72843.1 267 EADT 270
                 8765 PP

>> VitD-bind_III  Vitamin D binding protein, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00031      0.42      13      40 ..     165     192 ..     154     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00031
  VitD-bind_III  13 eyKkrlaeklkkklPeaspeelkelvek 40 
                     y++r++ +++   P+aspee++++v+ 
     CDO72843.1 165 KYRQRVERQFRIVKPDASPEEVAAVVND 192
                    699********************99975 PP

>> ACC_epsilon  Acyl-CoA carboxylase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.0       2.9     4e+03      24      37 ..      11      24 ..       6      31 .. 0.52
   2 ?   10.4   0.1   0.00058       0.8       3      19 ..     174     190 ..     172     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.9
  ACC_epsilon 24 araaaaaaaaaepa 37
                 ar++++++++++++
   CDO72843.1 11 ARQQQQQQQQQPAE 24
                 34444444444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00058
  ACC_epsilon   3 lrVvrGnPtdeELAALt 19 
                  +r+v+ ++++eE+AA++
   CDO72843.1 174 FRIVKPDASPEEVAAVV 190
                  8**************98 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.8       4.5   6.3e+03      81      88 ..      13      20 ..       2      30 .. 0.39
   2 ?   13.6   2.8   3.9e-05     0.054      13     116 ..      97     202 ..      94     213 .. 0.82
   3 ?    6.3   0.7     0.007       9.7      55     113 ..     213     272 ..     182     287 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.5
       Mod_r 81 eqeldell 88
                +q++++  
  CDO72843.1 13 QQQQQQQQ 20
                11111111 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.9e-05
       Mod_r  13 edeeklealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqel.dellqkfspdallarLqtavaeaee 109
                 ++e +l+ lv ++ +   +lke+ + l    +  a+++  ++++   lr+++ e l++++++e+ +++k ++  ++ ++ + pda  + + + v+++e 
  CDO72843.1  97 QSEALLDDLVGQTrQLSSELKERIQALASYPVTRAQDQVIRKNQTALLRQKFVEVLQNYQQVERDYRQKYRQRvERQFRIVKPDASPEEVAAVVNDTEG 195
                 5788999999988444889999999999999999********************************999877657777888888888888888877776 PP

       Mod_r 110 eSealae 116
                    ++  
  CDO72843.1 196 AGAQIFT 202
                 6665555 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.007
       Mod_r  55 eleelrselqekleelkelekefeekeqeldell.qkfspdallarLqtavaeaeeeSea 113
                 e +    e+q++++ +k++e+++ee+ q  ++++    ++d + ++ qt + + e +++a
  CDO72843.1 213 ESRMAYREVQDRHNDIKRIERTLEELAQLFNDMSvLVAQQDEAIDQIQTLAGNVEADTRA 272
                 444455678888888888888888888888888767777777788888777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2412  (0.134531); expected 358.6 (0.02)
Passed bias filter:                     1034  (0.0576719); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 2246.40
//
Query:       CDO72844.1  [L=455]
Description: hypothetical protein BN946_scf185002.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-12   45.2   0.0    2.7e-11   43.0   0.0    2.0  2  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.5e-15   2.7e-11     124     295 ..     173     353 ..      80     369 .. 0.81
   2 ?   -1.2   0.0     0.044   7.8e+02     353     370 ..     417     435 ..     399     435 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.5e-15
                  TSCBEGGGHHHH-...-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT..TTSSTT-EEEEEEHH CS
  Aminotran_5 124 egeldldelekll...nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK..llgPtGiGvlyvrke 216
                  e +l+++++ +++      ++lv ++  +  tG ++ ++ei+++ak++g++   D a avg  p+ +++++vDf++  + K  + gP Gi  lyv ++
   CDO72844.1 173 EHTLRTEDIIDTIkreGSSIALVLFAGLQFYTGQLFAIPEITAAAKAEGCVCGWDLAHAVGNVPLSLHDWDVDFAVWCSYKylNSGPGGIAGLYVHDR 270
                  4566677777777333367899***********************************************************8778**********996 PP

                  HHHTS....SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHHHHHHCTST CS
  Aminotran_5 217 llekl..eplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyl.eeigleaiekhekelaeyllerlkslp 295
                  +      e    g +  ++ ++  + +     + f+   p v +i++l   l+ + +++g++ai++++ +l+ yl+  lk+++
   CDO72844.1 271 HADLPvrEAGWWGHDPATRFDMpPTFKAIRGAQGFQQSNPSVLSIVALLGSLQVFdAAGGMQAIRARSLRLTGYLETLLKQSK 353
                  65432223344566667777777666666677779999*****************99********************999987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.044
                  -EEEEE.--TTS-HHHHHH CS
  Aminotran_5 353 gtvRaS.lyiynteeevdr 370
                   ++R+   ++ynt e+v+r
   CDO72844.1 417 DVIRIApVALYNTFEDVER 435
                  7899999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3589.95
//
Query:       CDO72845.1  [L=223]
Description: hypothetical protein BN946_scf185002.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1701.36
//
Query:       CDO72846.1  [L=293]
Description: hypothetical protein BN946_scf185002.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00012   22.1   2.6    0.00024   21.1   0.1    2.4  2  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.12   11.6   0.0        3.7    6.8   0.0    2.8  3  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3     0.044   3.9e+02       1      10 [.      29      38 ..      29      42 .. 0.87
   2 !   21.1   0.1   2.6e-08   0.00024      16      90 ..      64     142 ..      58     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.044
                   EEEE--STTT CS
  Abhydrolase_3  1 lvyfHGGGfv 10
                   +v++HGG++ 
     CDO72846.1 29 IVFVHGGAWR 38
                   79*******5 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.6e-08
                    TTHHHHHHHHHHHTSEEEEEE---T.TTS-T..THHHHHHHHHHHHHHHTHH.HHTETTCEEEEEEETHHHHHHHHHHH CS
  Abhydrolase_3  16 thdalcrelakelgavvvsvdYrlA.Pehpf..Paavedalaalrwlaeqaw.elgadpsrivlaGdSaGGnlaaaval 90 
                     + al+r l++++ ++v  ++Yrl  P+ p+  P   +d+l +l+ l +++  + +  ps+++l G S+ +++ a + l
     CDO72846.1  64 EYAALARALVQRTACAVAVPNYRLTtPDSPIqhPSHSQDVLLSLHFLSSSSPaHPQPPPSHLYLIGHSCSAHILASIFL 142
                    457899******************8799986448899*************98788899**************9988765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.079   7.1e+02       2      16 ..      24      38 ..      23      44 .. 0.85
   2 ?    1.0   0.0     0.024   2.1e+02      73      99 ..     120     146 ..      99     188 .. 0.82
   3 ?    6.8   0.0   0.00041       3.7     194     218 ..     215     239 ..     195     244 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.079
  Hydrolase_4  2 epkavvvlvHGlaeh 16
                 +p+ ++v+vHG a  
   CDO72846.1 24 QPQPLIVFVHGGAWR 38
                 78999******9875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.024
  Hydrolase_4  73 hpelplfllGhSmGGliallyllrypd 99 
                   p + l+l+GhS  + i ++++l  p 
   CDO72846.1 120 PPPSHLYLIGHSCSAHILASIFLSSPY 146
                  344489******999999988876665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00041
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyerlg 218
                   l++h+++D++vd+ +s+ +y++l+
   CDO72846.1 215 WLIIHSSNDTLVDQLQSETMYAHLN 239
                  69*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2310.96
//
Query:       CDO72847.1  [L=74]
Description: hypothetical protein BN946_scf185002.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.29s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 511.47
//
Query:       CDO72848.1  [L=515]
Description: hypothetical protein BN946_scf185002.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-15   54.6  12.4    7.5e-07   28.6   2.3    4.5  5  Hexapep          Bacterial transferase hexapeptide (six repea
    8.5e-07   28.8   0.0    1.3e-06   28.2   0.0    1.3  1  NTP_transferase  Nucleotidyl transferase
    9.8e-06   25.2  12.3      0.011   15.5   0.7    4.8  3  Hexapep_2        Hexapeptide repeat of succinyl-transferase
    5.4e-05   23.6   0.0    8.4e-05   23.0   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain
    7.2e-05   21.9   0.1    0.00013   21.0   0.1    1.4  2  Fucokinase       L-fucokinase
     0.0008   17.7   1.5     0.0014   16.9   1.5    1.3  1  DUF4954          Domain of unknown function (DUF4954)


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   8.2e-07    0.0025      13      35 ..     332     354 ..     323     355 .. 0.64
   2 !   28.6   2.3   2.5e-10   7.5e-07       1      36 []     338     372 ..     333     372 .. 0.79
   3 !   22.1   1.2   2.9e-08   8.8e-05       2      35 ..     356     388 ..     355     390 .. 0.90
   4 !   19.8   3.8   1.5e-07   0.00046       1      35 [.     378     411 ..     372     424 .. 0.81
   5 ?   -3.4   0.0       3.1   9.4e+03       5      14 ..     471     480 ..     471     482 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.2e-07
                 TEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  13 faviggnVkIGdnvkIgagvvig 35 
                  ++ig+n+ IG++++I+a+++++
  CDO72848.1 332 TCKIGNNTLIGSHTTIEANATVH 354
                 46677777777777777777765 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 2.5e-10
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +t IGs+++I ++a++++ V IG ++kIg+gvv+++
  CDO72848.1 338 NTLIGSHTTIEANATVHASV-IGQRCKIGPGVVLRN 372
                 456777777777****5555.************985 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 2.9e-08
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +vIG+ ++Igp++v+  n+ + d++ Igag+vi 
  CDO72848.1 356 SVIGQRCKIGPGVVL-RNAYVFDDTQIGAGCVIE 388
                 69*********9999.999999999999999996 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 1.5e-07
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +t+IG +++I  ++++g+ V +Gd++++ +g+ i+
  CDO72848.1 378 DTQIGAGCVIE-NSIVGARVRLGDRCHVPRGCLIA 411
                 58999999999.78888888888888887777775 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.1
                 ETTEEE-TTE CS
     Hexapep   5 GsnvlIgpfa 14 
                 Gsn+l++p +
  CDO72848.1 471 GSNALLWPQS 480
                 7888888866 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.4e-10   1.3e-06       2     136 ..      22     157 ..      21     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.4e-10
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT........SEEEEEEESS--BGG CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg........vevlialepegkgtA 87 
                      avILa    +R+ PLt   +  l+p+ +  +l++ t++ la +g++ei v++ +  +  v+  +++ + ++        v +  a e+ + g  
       CDO72848.1  22 AVILADSFNKRFKPLTVGKPRCLLPICNA-TLLDWTFESLALAGVQEIFVIC-RSYADQVKAAIRDSK-WSkpssglkiVPIVTAKETFSPG-- 110
                      89999999*********************.*****************55555.5778999*****996.88899995544444444554445.. PP

                      HHHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTT.SEE CS
  NTP_transferase  88 dAvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakg.tvt 136
                      dA++ + +    +++   ++ + gD + +  + e+v+ ++e++++   ++
       CDO72848.1 111 DAMRDIYTHGIITSD---FVLVTGDLVSNVRIDEVVRAHKERRRANpNAL 157
                      555544443333332...6788899***************9988754433 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   3.6e-06     0.011       3      32 ..     334     370 ..     333     372 .. 0.81
   2 !    7.9   0.3   0.00088       2.6      13      28 ..     372     389 ..     371     392 .. 0.88
   3 !    6.2   6.2     0.003       8.9       8      27 ..     379     405 ..     377     422 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.6e-06
                 EE-TT-EE-TT-EE.......SEEE-TT-EE-TT-EE CS
   Hexapep_2   3 iIGdnCliGanagi.......GvslGdncvvgaGvvi 32 
                 +IG+n+liG+  +i          +G +c++g+Gvv+
  CDO72848.1 334 KIGNNTLIGSHTTIeanatvhASVIGQRCKIGPGVVL 370
                 7999999999888766654454579***********8 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00088
                 T-EE..SEEE-TT-EE-T CS
   Hexapep_2  13 nagi..GvslGdncvvga 28 
                 na++   +++G +cv+++
  CDO72848.1 372 NAYVfdDTQIGAGCVIEN 389
                 8999989*********98 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.003
                 -EE-TT-EE.....S..EEE-TT-EE- CS
   Hexapep_2   8 CliGanagi.....G..vslGdncvvg 27 
                 + iGa ++i     G  v lGd+c+v 
  CDO72848.1 379 TQIGAGCVIensivGarVRLGDRCHVP 405
                 55666666545445999*******995 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.8e-08   8.4e-05       1      60 [.      22      88 ..      22     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.8e-08
                  EEEEEESS-TTT.....TTTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTCTS CS
  NTP_transf_3  1 aviLAGGrSsRm.....ggdKallplggkpllervldalraagvdevvvvggd..eevlaalarlgv 60
                  aviLA    +R+     g++ +llp+++ +ll++++++l+ agv+e++v++++  ++v+aa++++++
    CDO72848.1 22 AVILADSFNKRFkpltvGKPRCLLPICNATLLDWTFESLALAGVQEIFVICRSyaDQVKAAIRDSKW 88
                  6888888889996666667********************************9988889988866632 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       2.2   6.5e+03     139     150 ..     178     189 ..     176     192 .. 0.52
   2 !   21.0   0.1   4.5e-08   0.00013     270     331 ..     340     411 ..     310     429 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.2
  Fucokinase 139 Gvvffdhktaek 150
                 Gv+++d++t e 
  CDO72848.1 178 GVFVLDPDTSEC 189
                 555555555554 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.5e-08
  Fucokinase 270 k.......kesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelessee...slelpddtilq 331
                         +++a+v+ Sv+ +++++g+g v+ +  + ++++ig+++++ +  + +      ++++p  +++ 
  CDO72848.1 340 LigshttiEANATVHASVIGQRCKIGPGVVLRNAYVFDDTQIGAGCVIENSIVGARVRlgdRCHVPRGCLIA 411
                 1345566699**************************************999888776677778888777765 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.5   4.7e-07    0.0014     184     258 ..     332     402 ..     313     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.7e-07
     DUF4954 184 naglikNvkigdyatiegasklengtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkqf 258
                  +++ +N+ ig+++tie   +++     S   +  +iG gV+l+++ +   ++i  g vi++++vG  v+l+ + 
  CDO72848.1 332 TCKIGNNTLIGSHTTIEANATVHA----SVIGQRCKIGPGVVLRNAYVFDDTQIGAGCVIENSIVGARVRLGDRC 402
                 455557889999999997655553....33457799*********************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3580.42
//
Query:       CDO72849.1  [L=293]
Description: hypothetical protein BN946_scf185002.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0066   14.3   1.8     0.0082   14.0   1.8    1.1  1  PI3K_1B_p101     Phosphoinositide 3-kinase gamma adapter prot


Domain annotation for each model (and alignments):
>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.8   4.6e-07    0.0082     311     428 ..     118     236 ..     101     272 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.6e-07
  PI3K_1B_p101 311 eeledeeeedeedvdeeedleeeeeeeeedslarsstlstvsss.skdsmlsllslsssslassvss.lssgvds...dyvedsdessssspvaekk 402
                   +++++ +e+    ++++ + +ee+ +   + + ++    + s+    d + ++  + ++++a+   + +++++     + +e   e++++++++ekk
    CDO72849.1 118 KTEKKPKEK----AHKKTEKKEETAAPAAEEAPKEPAAEATSEApKADETPATEPVKETETAPAAEApAAEAAPTeaaGETEGPKEEKKEEKKEEKK 210
                   111111111....222222222222222222234444444444422355666666666666554332133333331135556666777777788999 PP

  PI3K_1B_p101 403 ekkskkksksrlserlsrlfkskspr 428
                   e+k++ k  +rls+r+  +fk+k ++
    CDO72849.1 211 EEKKSPKVGRRLSSRVGEFFKPKPKS 236
                   999999999***********776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1700  (0.0948185); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                       101  (0.00563333); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.59u 0.41s 00:00:02.00 Elapsed: 00:00:00.59
# Mc/sec: 1496.52
//
Query:       CDO72850.1  [L=237]
Description: hypothetical protein BN946_scf185002.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   71.0  10.4    1.3e-19   70.7  10.4    1.0  1  SUR7      SUR7/PalI family
  ------ inclusion threshold ------
        8.2    6.3   9.5       0.33   10.9   2.6    2.0  2  Fig1      Ca2+ regulator and membrane fusion protein Fig1


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7  10.4   1.4e-23   1.3e-19       4     209 ..      11     210 ..       7     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.4e-23
        SUR7   4 illflslaalilllfailgsiknstpltsiylskfdls.gldlaqigladvysfgvwgyC.........dnsdvnytkCskpkagypfdpleelnsesn 92 
                 +++fl +a+++l l++ l+ +     ++si l+++  + + +l  +  +   +fgvwgyC         + + ++ +kCs+p+ gy+fd  +++ +  +
  CDO72850.1  11 TPFFLFVAFFLL-LLVSLSLP----IIKSIFLFRLAADaSASLLDSSANGAVRFGVWGYCisaitvevvGIDRETAGKCSSPQLGYQFD--SDIANALH 102
                 555555555554.44445444....566777777776655555555799********************999*****************..88888887 PP

        SUR7  93 gkvdlPsnlrktlsklnnltkalfilhiialvlsfislvvgllai.cvspdnsrl.lsflnlllsvlsflatllaalldtllfvfvrkkinlkefgika 189
                   +dl +++  tls+       +++lh+ a+++++++lv++l++   + pd+ ++   + +l +++++++++++++lld++ ++ v + +   +   + 
  CDO72850.1 103 V-SDLTNAISRTLSA-------VLVLHPLACAATLVALVTSLFITrRQAPDTVSRpAVLSTLGIALFAAVIATISFLLDVIFVAAVHHRV---DKEADG 190
                 3.3366666666666.......9********************99667777766635556668999***************999999999...999999 PP

        SUR7 190 slglkflafaWlalaaallv 209
                  l+l++  ++Wl+l a++++
  CDO72850.1 191 VLHLNWGNAVWLSLGATIAL 210
                 9***************9986 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.25   2.2e+03      89      99 ..      15      25 ..       3      40 .. 0.53
   2 ?   10.9   2.6   3.6e-05      0.33       4     163 ..      44     199 ..      41     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.25
        Fig1 89 tlllfllllyf 99
                 ++ f lll +
  CDO72850.1 15 LFVAFFLLLLV 25
                22222222222 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.6e-05
        Fig1   4 ksanstggleelevrvGYlGvCvdkspksliCrkksnatelasllslsssssskstsdplnlvelakkfsdnvvhpyllmvaiiLtlllfllllyfplg 102
                 +sa+  +++++ +vr+G  G C++ ++ +++   +++a ++ s      ++  +++++ l   +l ++ s+++    +l+     ++  ++ l+++ + 
  CDO72850.1  44 ASASLLDSSANGAVRFGVWGYCISAITVEVVGIDRETAGKCSSPQL--GYQFDSDIANALHVSDLTNAISRTLSA--VLVLHPLACAATLVALVTSLFI 138
                 56677789999***************88666655555555543322..333334444455555555555544332..3333322333333333333333 PP

        Fig1 103 seipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkk 163
                   ++     s+++   +l+++ +++++++++ l+  + + a  + v + + g++  + G  
  CDO72850.1 139 TRRQAPDTVSRPAVLSTLGIALFAAVIATISFLLDVIFVAAVHHRVDKEADGVLHLNWGNA 199
                 467888899999999******************************9999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1430.11
//
Query:       CDO72851.1  [L=717]
Description: hypothetical protein BN946_scf185002.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-77  257.4   0.0    1.2e-76  256.9   0.0    1.2  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    2.5e-08   34.3   0.0    1.2e-07   32.2   0.0    2.1  2  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
     0.0031   17.3   0.0      0.005   16.6   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.032   14.0   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.042   13.6   0.0      0.073   12.8   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.9   0.0   3.2e-80   1.2e-76       1     200 []     432     641 ..     432     641 .. 0.93

  Alignments for each domain:
  == domain 1  score: 256.9 bits;  conditional E-value: 3.2e-80
                      HHHH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGG CS
  Methyltr_RsmB-F   1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgv 94 
                      +++L pq+ee++lD+++aPGgKTth+a+lm+n+g+++A+dank R+k++++n++rLg++n+ v+++D+r+++kv+gg  fDr+LlDaPCsgtgv
       CDO72851.1 432 VIALSPQPEERVLDMASAPGGKTTHMAALMQNTGVIFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVIGG--FDRVLLDAPCSGTGV 523
                      579*************************************************************************9..*************** PP

                      TTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCE....EEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC..... CS
  Methyltr_RsmB-F  95 irrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeea..... 179
                      i++d +vk++++e+d++ l++lqk+l+  aid++    k+gG+lvYsTCsv+v+Ene+v+++aL+kr++v+lvet l+ ++    g ++     
       CDO72851.1 524 ISKDASVKTNKSERDFTLLSHLQKQLILCAIDSVradsKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVKLVETGLEFGR---PGFTSysgkk 614
                      **********************************99*9************************************9765322...1111122345 PP

                      ......TSEEE-TTTTSS-SEEEEEEE CS
  Methyltr_RsmB-F 180 ......gtlrllPhtenkdgffiaklk 200
                             t+r++Ph +n+dgf++ak+k
       CDO72851.1 615 fndklsLTRRFYPHVHNMDGFYVAKFK 641
                      6888889******************96 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.2e-11   1.2e-07       9      89 ..     343     428 ..     336     429 .. 0.86
   2 ?   -1.9   0.0       1.4   4.9e+03       7      42 ..     455     490 ..     454     499 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 3.2e-11
                      HHHHHGG.GHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-.TT-TTEEES---....TTSHHHHTTS-EE--TTT CS
  Methyltr_RsmF_N   9 mkellge.eaeaflaaleeprkkglRvNtlKisveeleklse..efelepv.pwceeGfyleeeerp.gkhplheaGlyYiQEpSa 89 
                      + +l++  ea +f++a e pr++ +R+Ntl++++++l+++    +++lep+  w++ G  + e++ p g +p++ aG y +Q +S+
       CDO72851.1 343 LFQLFPVaEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQALInrGVNLEPIgKWTNVGLQVFESSVPiGATPEYLAGHYMLQAASS 428
                      55555556999************************9998554479******77******999888777*****************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
                      HHHHHHHGGGHHHHHHHHH-----EEE--TTS..TT CS
  Methyltr_RsmF_N   7 ekmkellgeeaeaflaaleeprkkglRvNtlKisve 42 
                      ++m +l+++    f +  ++ r+k+l  N  ++ ++
       CDO72851.1 455 THMAALMQNTGVIFANDANKARTKSLTANVHRLGCK 490
                      578888888888899999999999999998876555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06     0.005      71     148 ..     437     514 ..     402     521 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEE CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihv 148
                  ++ +rvL++ s  G +t  +a l++++g + + +  k  +++ ++n+++l+ +nv+v   DGr+  +    +d++++
  CDO72851.1 437 PQPEERVLDMASAPGGKTTHMAALMQNTGVIFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVIGGFDRVLL 514
                 36789************************8888888888899999******************986666666776665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.9e-06     0.032       3     113 ..     439     573 ..     437     616 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.9e-06
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl............ 84 
                       + rvlD +++ G +t  +a ++   + ++  D ++   ++ ++n  +lg +nv ++  d  e++k +    fD +l ++++            
       CDO72851.1 439 PEERVLDMASAPGGKTTHMAALMQNTGVIFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVI--GGFDRVLLDAPCsgtgviskdasv 530
                      5689****************98888999*************************************863..57******9666664444442222 PP

  Methyltransf_31  85 .....naladpdkile..................eiervlkpggilliedpr 113
                                     +                  ++    k+gg+l+ ++++
       CDO72851.1 531 ktnksE---------RdftllshlqkqlilcaidSVRADSKTGGYLVYSTCS 573
                      233330.........2332222222233333333777777777777777777 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     2e-05     0.073      25      77 ..     439     492 ..     429     496 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwq.psdqdeelresiaawadelalsnl 77 
                  +ervL++as  G   +++A++++n   + + d ++  ++s++a ++ l+ +n+
  CDO72851.1 439 PEERVLDMASAPGGKTTHMAALMQNTGVIfANDANKARTKSLTANVHRLGCKNV 492
                 3459********************986542789999999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4559.89
//
Query:       CDO72852.1  [L=233]
Description: hypothetical protein BN946_scf185002.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-20   72.0   1.3      4e-20   72.0   1.3    1.6  2  FUN14          FUN14 family
  ------ inclusion threshold ------
       0.32   11.6   2.8       0.59   10.7   2.8    1.5  1  Adeno_E3_14_5  Early E3 14.5 kDa protein
        2.8    7.4   7.5        4.2    6.8   7.5    1.2  1  CAP_N          Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> FUN14  FUN14 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.95   5.7e+03      20      32 ..      69      81 ..      42      84 .. 0.59
   2 !   72.0   1.3   6.7e-24     4e-20       1      91 []     131     230 ..     131     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.95
                xxxxxxxxxxxxx RF
       FUN14 20 KlaaiavGgglll 32
                K+ ++ vG+gl +
  CDO72852.1 69 KFGVVSVGLGLSF 81
                3333444444333 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 6.7e-24
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxx RF
       FUN14   1 igiGaviGlvtGfalkkvgKlaaiavGggllllqilasqgyikvnwdkiekdveelldrnkdgklgtede...........klltenlpfsagFlaGfl 88 
                 +++G+v+G+++G+++kk +K++a+++Gg ++llq+l s  +++vnw++  +++e+l+ ++++   ++              ++lt++++  a+F+aGf+
  CDO72852.1 131 LTFGTVCGICAGVFVKKGAKAVAFVMGGVFVLLQYLGSLSLVRVNWNRAASRFENLFYTKDATGAKR--PpnlgflfrwivDFLTADFQQRASFVAGFA 227
                 689**************************************************98777666543333..2469************************** PP

                 xxx RF
       FUN14  89 lGl 91 
                 lGl
  CDO72852.1 228 LGL 230
                 **7 PP

>> Adeno_E3_14_5  Early E3 14.5 kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.8   9.9e-05      0.59      55      98 ..      90     134 ..      70     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.9e-05
  Adeno_E3_14_5  55 damnhptfpvpaviplqqviapinqprppsptpt.eisyfnltgg 98 
                    d++   t p   v p  qv a   qp pp p p+  +s+++lt g
     CDO72852.1  90 DTVTSQTAPPAVVPPPSQVKAAPVQPPPPPPPPSsIVSFYELTFG 134
                    666667777555556678876555666666666515699999976 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.5    0.0007       4.2     237     258 ..     103     124 ..      79     133 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0007
                 C--XXXXXXX....XXXXXXXX CS
       CAP_N 237 aaasaaaaggpppPpPpPppas 258
                 +++s+ +a+  +pPpPpPpp+s
  CDO72852.1 103 PPPSQVKAAPVQPPPPPPPPSS 124
                 2222222222444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1493.59
//
Query:       CDO72853.1  [L=252]
Description: hypothetical protein BN946_scf185002.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1897.55
//
Query:       CDO72854.1  [L=305]
Description: hypothetical protein BN946_scf185002.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2322.70
//
Query:       CDO72855.1  [L=175]
Description: hypothetical protein BN946_scf185002.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1185.97
//
Query:       CDO72856.1  [L=308]
Description: hypothetical protein BN946_scf185002.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.5    7.5   6.5       0.23   10.9   0.8    1.8  2  Vac7      Vacuolar segregation subunit 7


Domain annotation for each model (and alignments):
>> Vac7  Vacuolar segregation subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5     0.053   9.4e+02     100     119 ..      24      43 ..       6      53 .. 0.65
   2 ?   10.9   0.8   1.3e-05      0.23      86     117 ..     138     169 ..     135     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.053
        Vac7 100 rrfHSRtPSatSmasqvdqr 119
                 +  HSR  Sa+S+   ++q+
  CDO72856.1  24 TPNHSRNTSASSLPRITQQQ 43 
                 34577777777776554443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 1.3e-05
        Vac7  86 vYeSNPpdsedrrkrrfHSRtPSatSmasqvd 117
                 vY   P   +    +r HS tPSa+S++s++ 
  CDO72856.1 138 VYPGAPCADYAGMPERAHSATPSASSIHSMAP 169
                 88889988888899***************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2108.74
//
Query:       CDO72857.1  [L=1108]
Description: hypothetical protein BN946_scf185002.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-08   31.8   0.0    1.4e-07   30.9   0.0    1.3  1  Transposase_21  Transposase family tnp2


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   8.1e-12   1.4e-07      48     154 ..     393     499 ..     382     546 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 8.1e-12
  Transposase_21  48 sysvWpvllipynlPPWlclkqsnfllsllipGpksPgk.didvylePlvddlkelweeGvetydalkeekfnlravllwtindfPalstlsGls 141
                     sys+  +      lPP l    +n++l+ l  Gpk+P+  +++ ++e +vddl+ l+  G+ +   +  e  + r++++ t +d+Pa+ ++ G +
      CDO72857.1 393 SYSTGALSFSLPTLPPALRYRAENLILTALTAGPKEPDAeQLQNWMELIVDDLLMLYYLGIFAPTPSCVEGRRARVAVICTCTDHPAMCKVYGFA 487
                     66666666666689***********************96269**********************99999************************99 PP

  Transposase_21 142 tkgklacvtCkkn 154
                      k+++  + C+  
      CDO72857.1 488 DKSHTMVP-CTVG 499
                     88765444.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 6560.97
//
Query:       CDO72858.1  [L=546]
Description: hypothetical protein BN946_scf185002.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   12.7   0.1        0.2   11.6   0.1    1.5  1  AAA_lid_8  AAA lid domain


Domain annotation for each model (and alignments):
>> AAA_lid_8  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.1e-05       0.2      10      52 ..     350     392 ..     347     398 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
   AAA_lid_8  10 knkleeeeeaiyvSDRRwkkivkllkasAylngrdevnlsDll 52 
                 +n+l+ + +a     RR kk+ +llk+ A++ ++  v+++ l+
  CDO72858.1 350 RNQLNANARAARWLNRRRKKCSNLLKVTAMYMEKHGVDPTPLI 392
                 567777777777889*******************999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3875.16
//
Query:       CDO72859.1  [L=418]
Description: hypothetical protein BN946_scf185002.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3235.35
//
Query:       CDO72860.1  [L=288]
Description: hypothetical protein BN946_scf185002.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2019.89
//
Query:       CDO72861.1  [L=720]
Description: hypothetical protein BN946_scf185002.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4718.34
//
Query:       CDO72862.1  [L=370]
Description: hypothetical protein BN946_scf185002.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.1    9.4   0.0        1.1    9.4   0.0    3.7  4  DUF4229   Protein of unknown function (DUF4229)


Domain annotation for each model (and alignments):
>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4      0.15   2.7e+03       9      24 ..      65      80 ..      60      87 .. 0.69
   2 ?   -0.8   1.8     0.091   1.6e+03      18      46 ..     155     184 ..     151     186 .. 0.61
   3 ?   -2.2   0.2      0.25   4.5e+03      29      43 ..     238     252 ..     217     258 .. 0.58
   4 ?    9.4   0.0   6.2e-05       1.1      30      57 ..     343     370 .]     309     370 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.15
     DUF4229  9 aLfvvltavillvarl 24
                a +++lt+v++++  l
  CDO72862.1 65 AFMAMLTGVVHVFSTL 80
                4567777777777655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.091
     DUF4229  18 illvarliglp.vpllvaallAlvvalplS 46 
                 il +++l+++    ++v+ l ++v+ lp S
  CDO72862.1 155 ILCLWMLLVVGaAEMVVSNLGSIVLTLPSS 184
                 334444444444677777777777777766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.25
     DUF4229  29 vpllvaallAlvval 43 
                 ++++ +++ +l++al
  CDO72862.1 238 SRVVFLFTTSLILAL 252
                 455555555555555 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 6.2e-05
     DUF4229  30 pllvaallAlvvalplSmvllkklRdra 57 
                 + ++a + A +va +  +vl kk+R r+
  CDO72862.1 343 TTFWASTAASLVACCAALVLWKKWRHRV 370
                 568**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2465.32
//
Query:       CDO72863.1  [L=396]
Description: hypothetical protein BN946_scf185002.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-109  367.0  13.0     2e-108  363.0  13.0    1.9  1  ALG3      ALG3 protein


Domain annotation for each model (and alignments):
>> ALG3  ALG3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.0  13.0  1.1e-112    2e-108      18     358 .]      36     363 ..      27     363 .. 0.93

  Alignments for each domain:
  == domain 1  score: 363.0 bits;  conditional E-value: 1.1e-112
        ALG3  18 vpYTeIDwkaYmqqvelflngerdYsklkGdtGPlvYPagfvy....iysllysltdegenirlaQviFavlylltlllvlaiyak.akvppyvlvllv 111
                 v  TeIDw++Ym q el+l+gerdY+ ++G tGP+vY a+       + ++ly+ltd g+n+ +aQ i+avlyl++l+l+ a+y+   ++p+++l+ll 
  CDO72863.1  36 VLDTEIDWETYMYQLELYLKGERDYALISGPTGPIVYVASACCpcspLNQVLYNLTDAGTNLWKAQEIYAVLYLASLALTAAVYRVaGNIPNWTLLLLP 134
                 556************************************9876444478999**********************************999********** PP

        ALG3 112 lskRlhSiyvLRlFNDcvavlllvlaillllkkrwtlgsvlyslavsvKmnvllflPalllllllkegllktlaallvialvqvllglpFlltnpveYl 210
                 lskR+hSiyvLRlFNDc+av+++ +a+l++++    +g++l+  a+svKm vll++P+ll++l++++gl++t+ ++l++ ++q+l+glpFl+++p++Yl
  CDO72863.1 135 LSKRIHSIYVLRLFNDCWAVVAAQAAVLAFANGWDAAGILLLGGALSVKMCVLLYVPGLLVVLFKRRGLVSTILHVLALGATQLLIGLPFLAAYPWSYL 233
                 *************************************************************************************************** PP

        ALG3 211 kraFdlsrqFlykwtvNwrflseevFlskefalaLLllhllllllfaltrwlkskakleavekkllkklkkkkeskelsaelillvlftsnliGivfar 309
                 k+++++sr+Fl+kwtvNwrfl ee+Fl+  +a+ L    +  +l+  l + ++                  + + ++l+a+++++vl+tsnliGi+far
  CDO72863.1 234 KNSYEFSRVFLFKWTVNWRFLGEELFLNPLWAKGLSHGGVWGILIRGLRKPTE------------------APTVATLTADYVTTVLYTSNLIGILFAR 314
                 **********************************9766665555544333222..................2234567899****************** PP

        ALG3 310 sLHYQFyswyfhslplllwstklslvlkllllllieyawnvyPstelsS 358
                 sLHYQFyswy+++lp+l+w+tk+++ ++l+lll+ieyawnvyPst+lsS
  CDO72863.1 315 SLHYQFYSWYAMQLPFLAWRTKYPIPIRLALLLAIEYAWNVYPSTSLSS 363
                 ***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2910.58
//
Query:       CDO72864.1  [L=883]
Description: hypothetical protein BN946_scf185002.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.1e-101  339.4   0.1   6.1e-101  338.9   0.1    1.3  1  Peptidase_M13_N  Peptidase family M13
    1.2e-62  211.2   0.0    2.3e-62  210.3   0.0    1.5  1  Peptidase_M13    Peptidase family M13
  ------ inclusion threshold ------
        1.1    7.4  11.6        1.7    6.8  11.6    1.1  1  SSP160           Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> Peptidase_M13_N  Peptidase family M13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.9   0.1    1e-104  6.1e-101       1     382 []     156     609 ..     156     609 .. 0.89

  Alignments for each domain:
  == domain 1  score: 338.9 bits;  conditional E-value: 1e-104
  Peptidase_M13_N   1 PCdDFYeyaCGnWlke.....hpipadkssygtfeelqeelekqlreilee........kpsskedakavkkaktlYksCmdedaieklglkpl 81 
                      PC++FY++a    ++      hpip+dk+s+g+fe l++++++ l++il+e         ++s+ d++ +kk++ lY+sCm ed++++ g kpl
       CDO72864.1 156 PCENFYDFASQSSHDIvdtraHPIPSDKGSFGNFEALAQQNRRLLQQILSEdasarfaaTSASDYDQQILKKLRGLYRSCMAEDELNEIGEKPL 249
                      9***********775466666*********************99*****7767777766555555666999*********************** PP

  Peptidase_M13_N  82 ldllkelgg.....lds........nwkdkfdllellaklrrygidilfslgvdpdp.kdpsknvlyldqpglglpdreyylkerdekeeeile 161
                      +++ +++++     + +        ++k++  l++++a+l+++ id+lfs+++d+d  +dp+ ++l+++qp+lglp++eyy      +ee+i++
       CDO72864.1 250 REMAQKIRDlfrgkT-TvvdsleneEDKERARLTATVAYLHSRAIDALFSYDIDGDVgNDPNLMTLWISQPELGLPSKEYY------EEESIVD 336
                      ********9565550.155556655777799**************************9999********************......4789*** PP

  Peptidase_M13_N 162 aykeylakllkllge................................................eaaelaeevvefekklakitldseer.rdpe 206
                       y+++l++ll  l e                                                +a++  +evv fekk+a+++ld + + +dp 
       CDO72864.1 337 LYQTVLERLLLTLDEdeeesqaqaieasklvvheerlrvwppwpwppwgdddngheeplnqteRARKYSKEVVTFEKKIANASLDLDVLfQDPI 430
                      *********997744556677788888999999999999999999999999988888887654357788****************88888**** PP

  Peptidase_M13_N 207 klynpmtlaelqklapqidwkaylsallertsssekvivtepeylkklskllaettpkrtlanYllwrlvrelapylsdefrda..kfefyktl 298
                      ++ynp++++++ + +pq+d+ +y+sa+++r s+++++++t+ +yl++ls++l+e t+++tl++Y++ r+ +++a+yl+ +++++   ++++++l
       CDO72864.1 431 ATYNPVSFKNVSEQLPQFDFSTYFSAFAPR-SFPSTIVLTSTTYLSSLSSILNE-TDTATLEAYFITRAGLSYASYLGLDTEAWkaTRSLEEVL 522
                      ************666***********8887.6********************77.888******************8888877755789999** PP

  Peptidase_M13_N 299 sgreer...prwkrCvsqvnsllgmalgrlyvkkyfpeeskkdveemvedikeafkerlkeldWmdeetkkkAleKldamklkigyP 382
                      +g+++    +r ++Cv++v+s++g+a+gr++v+++f +esk++++++++ i+eafke+l++ldWmde++ k+A+eK+da+++k+g+P
       CDO72864.1 523 RGIKKGavgDRAEYCVARVESAMGFAAGRYFVNETFGGESKEKATKVITGIIEAFKESLQHLDWMDEKSAKAAAEKADAIRVKVGFP 609
                      ****777789****************************************************************************9 PP

>> Peptidase_M13  Peptidase family M13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.0   3.8e-66   2.3e-62       1     205 []     670     880 ..     670     880 .. 0.94

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 3.8e-66
  Peptidase_M13   1 NAyYqpeensivfpaailqppffdleypeavNyggiGaviaHEltHgfddqgvqfdkegnlaswltdedaeefkekakclieqfsevtepektk.. 94 
                    NAy++p  n+ivfpa+ilqppff++++p ++ yg+ G+++aHEltH+fd +g  ++++g+l++w+t++ +e+f+e++kc++eq+s++t  +     
     CDO72864.1 670 NAYFNPPANEIVFPAGILQPPFFSQDWPGYMSYGSFGQIAAHELTHAFDSAGRLYNQQGKLEQWWTNKTSEGFNERQKCIVEQYSNYTIDDGKGgk 765
                    9**************************************************************************************999987788 PP

  Peptidase_M13  95 .avngaltlgEniADlggleiAyraykk.....lksakeerlpelenltkdqlfFisyAqiwcekqsdeellrqllvdvHspaelRvngvlsnlpa 184
                     +vng+lt gEni+D  g+  Ayra+k       ++  e  lp+l+ +t dqlfFis+A+ w ++ ++e+++ +  +d+Hsp+++Rv g++snlp+
     CDO72864.1 766 iHVNGNLTSGENIGDS-GIILAYRAWKAqydsgVENGIEFLLPGLN-YTRDQLFFISFARAWAQNIKPESAVARVRTDPHSPNRYRVEGTVSNLPE 859
                    ***************7.68899999998755444455555677776.************************************************* PP

  Peptidase_M13 185 FaeaFnckegskmypekekrv 205
                    Fa+aF+c + +k++p +ekr+
     CDO72864.1 860 FAKAFKCSPHAKLNPPQEKRC 880
                    ******************998 PP

>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.6   0.00028       1.7     666     722 ..      84     140 ..      67     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00028
      SSP160 666 ncvdpgsvpdeattttssttttttttttaaptttttkaanapftyplctlimsaacv 722
                 n  + gs      t+t++tt+ +t+ttta  ttt +  a ap t p   + +s +c+
  CDO72864.1  84 NSGKGGSTTTVIVTATATTTARATATTTAVATTTVAIPAPAPTTPPEEPVCLSPSCI 140
                 56677888888999999999999*********************9998888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 5841.43
//
Query:       CDO72865.1  [L=751]
Description: Glycoside Hydrolase Family 89 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-135  451.4   1.5   2.5e-135  450.8   1.5    1.3  1  NAGLU     Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel do
    9.2e-73  245.0   3.1    1.3e-72  244.6   3.1    1.2  1  NAGLU_C   Alpha-N-acetylglucosaminidase (NAGLU) C-terminal do
      1e-19   70.1   0.0    2.3e-19   69.0   0.0    1.6  1  NAGLU_N   Alpha-N-acetylglucosaminidase (NAGLU) N-terminal do
  ------ inclusion threshold ------
      0.048   13.2   0.1      0.083   12.4   0.1    1.3  1  DUF3730   Protein of unknown function (DUF3730)


Domain annotation for each model (and alignments):
>> NAGLU  Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.8   1.5  5.5e-139  2.5e-135       1     332 [.     123     461 ..     123     462 .. 0.99

  Alignments for each domain:
  == domain 1  score: 450.8 bits;  conditional E-value: 5.5e-139
                 EEE--TTHHHHTTTT--HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--S.TT----TTHHHHHHHHHH CS
       NAGLU   1 RyylNvctfsYtmafwdwerWereiDwmAlnGinlpLaivGqeavwqevlkelglsdeeikeflsgpaflawqrmgnleg.wggplpqswiekqaeLqk 98 
                 Ry++N++tf+Yt+afwd+++We e+Dw+Al+G+nlpLa+vG+e+++ e+++e+glsd+ei+eflsgpaf+aw+r+gn++g wgg+lp +w+++q++Lqk
  CDO72865.1 123 RYHFNTVTFDYTAAFWDFKQWELELDWLALRGVNLPLAWVGYEYILIETFREVGLSDAEISEFLSGPAFQAWNRFGNIQGsWGGELPMDWVNDQFALQK 221
                 9*******************************************************************************9****************** PP

                 HHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETT....EE--EEE-SS--HHHHHHHHHHHHHHHHH-..--SEEE--TTTTS-..--TT CS
       NAGLU  99 kilkrmrelgmtpvlpaFaGhvPkalkeklpkakvteqgewsg....fkrpafldptdplfakiakafleeqkklyg..tshiYaaDpFnEgepkssde 191
                 k +krm elgmtpvlp+F+G+vP+al++ +p+a++++ ++wsg     ++++fl+p+dplfa+++k+f+++q+++yg  +shiY++D++nE++p s d+
  CDO72865.1 222 KLIKRMVELGMTPVLPSFTGFVPRALAKLYPNASIVTGSQWSGfpaqLTNDSFLEPSDPLFATLQKSFISKQQAAYGadVSHIYTLDQYNENDPFSGDP 320
                 *******************************************9999999***************************8889****************** PP

                 --HHHHHHHHHHHHHHH-TT-EEEEEEBTT.........BS-HHHHTT-S.GGGEEEEETTTTTS-......HTTT--EEEEE---STT--SS---HHH CS
       NAGLU 192 eylaavskaiykalkaadpkavWvlqgWlfvsdkkfWtkerveallsavp.kdklliLDlfsekkpvwkrtksfegkpwiwcmlhnfGgrtglyGklek 289
                 +yl++v++ ++++l+ adp+avW++qgWlf+s+++fWt+er+ea+l +vp +d+++iLDl+se++p+w+rt+s++gk+w+wc lh++Gg++g++G+l++
  CDO72865.1 321 AYLRNVTAGTFASLRGADPDAVWLMQGWLFFSSADFWTDERIEAYLGGVPgNDSMIILDLYSEAQPQWNRTHSYYGKQWVWCELHDYGGNMGFEGNLRE 419
                 *************************************************************************************************** PP

                 HHHHHHHHHHT-S...EEEEEE--S-S-S-HHHHHHHHHGGG- CS
       NAGLU 290 vaseiaealakkeksklvGiGltpEgiennpvvyelllelaws 332
                 +++++ +al ++ +s+++G+Gl++Eg+e n++vy++ll++aws
  CDO72865.1 420 LTQDPLAAL-HSPGSSMKGVGLAMEGQEGNEIVYDILLDQAWS 461
                 *********.66789***************************8 PP

>> NAGLU_C  Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.6   3.1   2.9e-76   1.3e-72       1     262 [.     470     745 ..     470     749 .. 0.90

  Alignments for each domain:
  == domain 1  score: 244.6 bits;  conditional E-value: 2.9e-76
                 HHHHHHHHHHT..---HHHHHHHHHHHHTTTS---S---SS---GGGS-S-SS---SSTT..-----S-H.HHHHHHHHHHHHHHHH...HTT-HHHHH CS
     NAGLU_C   1 WvkdYakrRyg..kedeeleeAweiLletvYnntkkeaegapesliearPslnakkassk..kaekkYdp.kdllkawkllleaade...lkssetyry 91 
                 +v+++++rRy     ++++ +Aw++L++tvYnn++ +++++ +s++e+ P+l+  ++++   ++   Yd+ ++++ a+k llea+ +   l+s ++++y
  CDO72865.1 470 YVDSWVARRYPvkPLPHAALDAWRTLSSTVYNNQDPSTQATIKSIFELAPALTGLTNRTGhhPTAIPYDTdSSVVPALKALLEAKAQhpaLASVPEFTY 568
                 899*******9766789999*********************************87776654444555**97899***********99999********* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT..-HHHHHHHHHHHHHHHHHHHHHHTT-GGGBHHHHHHHHHHSST.T--HHHHHHHHHHHHTTTSSTT.TS CS
     NAGLU_C  92 Dlvdvtrqvlanlakelykelvaaykak..daeafkkaskkllelledlDellatreeflLgkWiedArslak.teeekelyelnArnqiTlWggpege 187
                 D+vdv+rq+l+n++ +ly++l+ ay+++  +a+++++a+++ll+ll dlD+ll t+e+flL+ Wi+dA+++++ +++  +++e+nArnqiTlW gp+ge
  CDO72865.1 569 DVVDVARQLLSNRFVDLYTALIVAYNTSssTAHSVQAAGQQLLDLLCDLDALLYTNEHFLLSAWIADAHKWSHgSKTYGAYLEYNARNQITLW-GPDGE 666
                 **************************99667889**************************************94444466*************.699** PP

                 -TTTT----BTHHHHTHHHHHHHHHHHHHHHHTT-S---.......HHHHHHHHHT--T----S....----HHHHHHH CS
     NAGLU_C 188 lnDYAnkeWsGLvkdYYlpRWklFvdalaealeegkefdeeelkkklfefeeaWveskkeypsk....pegdtvelake 262
                 +nDYA+k+W+GLv +YY+ RW++Fvd+l+e+ ++gk+++++ +k+++ ++ e+W + ++  ++      +gdt+++a +
  CDO72865.1 667 INDYASKAWAGLVGTYYKTRWETFVDYLVETKRTGKAYNATLVKSEMLAIGEKWDNGTWGTQKGerwgVHGDTWDMAFK 745
                 ******************************************************9999966664556666777777655 PP

>> NAGLU_N  Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   5.1e-23   2.3e-19       2      81 ..      30     108 ..      29     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 5.1e-23
                 HHHHHHHHHH-GGGGGEEEEE.--BTTB-EEEEE-SSS-EEEEESSHHHHHHHHHHHHHHHS--B--TT--B--.--SS-- CS
     NAGLU_N   2 avrelleRllpehaskfkfelveeksgkdvFeisskggkilIrGnsgvalasGlnwYLkyycgvhiswngdqlk.lPavLP 81 
                 ++++l++R++p ha++f+f+lv  +++ d F+i ++ + + +++++ +a+a+G+++YL++y gv+i+w+g++l+ lP +LP
  CDO72865.1  30 GIYALAKRRVPLHADAFSFSLV--DGEPDAFTIRDAYNGVHVQCTTVSACARGFHTYLTQYGGVDIWWTGSRLNqLPFKLP 108
                 799******************9..9*******************************************************9 PP

>> DUF3730  Protein of unknown function (DUF3730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.9e-05     0.083     120     155 ..     569     620 ..     494     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
     DUF3730 120 d............LvdaysavL...vetesqvseaqalglelleaLcsae.v 155
                 d            +vd y+a++   + ++s+ +++qa g +ll+ Lc ++ +
  CDO72865.1 569 DvvdvarqllsnrFVDLYTALIvayNTSSSTAHSVQAAGQQLLDLLCDLDaL 620
                 04455555555559*********9777777777***************9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 4758.35
//
Query:       CDO72866.1  [L=385]
Description: hypothetical protein BN946_scf185002.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-56  191.7   0.0    3.4e-56  190.0   0.0    1.7  1  Scramblase  Scramblase


Domain annotation for each model (and alignments):
>> Scramblase  Scramblase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.0   1.9e-60   3.4e-56       9     221 .]     116     370 ..     109     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 1.9e-60
  Scramblase   9 andpaalei.LleldsllveqqiellevllgfEtaNrYvvkdvagqkvavaaer....snalaRqllgthRpfvvkilDnlgnevltlkRpfkcisc.. 100
                  n +++l++ L++ ++l+v++qie+l++++gfE+aNrYv+ +  g++++++ae+     ++++Rq+++thRpf++ ++D+ g  +l l+Rpf +i+   
  CDO72866.1 116 SNPEEGLNAlLMNYNKLVVTRQIEMLNIFMGFEQANRYVITNEVGDTLGYIAEEprglLSTFSRQIFRTHRPFRAIVMDAAGSPILWLRRPFAFINSrm 214
                 45556676516788********************************************9*************************************534 PP

  Scramblase 101 lasvlqeaeieapegtti....Gevlqkwhlwrrkyellnakr.eqvlsi............egplvkid.cvldteFevktadgevvgsisrkwsGll 181
                 + ++l+  +  +peg+ +     ev+q+wh+wrrky+l+  ++  ++ls+            + +++kid  +l ++F++++a g+ ++s++r ++G++
  CDO72866.1 215 YVQRLKDFNTYTPEGEPVldtfAEVQQRWHPWRRKYDLFLRDTpHRILSVlnepqpepepllFHQFAKIDeGFLAWHFTLRDARGQPIASVNRAFRGFG 313
                 45555555556666654433339*****************99978888874333333333335689********************************* PP

  Scramblase 182 rElftDadtyvvrFpl.................dLdlklkavllgaafliDfdyFer 221
                 rElftD+++y ++F+                  +L+++++a++l+ a+ iDfdyF+r
  CDO72866.1 314 RELFTDTGQYFINFDAsvaseeselsqspilirNLSIEERALVLATAINIDFDYFSR 370
                 *******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2668.69
//
Query:       CDO72867.1  [L=553]
Description: hypothetical protein BN946_scf185002.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-25   87.7  12.5    7.5e-25   86.8  12.5    1.5  1  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
  ------ inclusion threshold ------
       0.13   12.7   6.5       0.24   11.8   6.5    1.5  1  Lar_restr_allev  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8  12.5   8.3e-29   7.5e-25       2      57 .]      93     155 ..      92     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 8.3e-29
    zf-Mss51   2 CPvpkhkqt........apkhvdfeCpdCGiptycseehwedDyeahleicdtLrqvnedeHDL 57 
                 CPv++++++        +pk v+feCpdCG+pt+cseehw++D e h+++c++Lr+vnedeHDL
  CDO72867.1  93 CPVCASEHHavhahtkaQPKAVAFECPDCGWPTHCSEEHWAADDE-HQKYCSRLREVNEDEHDL 155
                 *****9999************************************.*****************9 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   6.5   2.7e-05      0.24       2      41 ..      89     133 ..      88     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
  Lar_restr_allev   2 eLkpCPfCggravlersqrvvaeigqcvyCadCga.....stpwf 41 
                      +L pCP C ++   ++++ +++ ++  ++C dCg       ++w+
       CDO72867.1  89 QLAPCPVCASEHHAVHAHTKAQPKAVAFECPDCGWpthcsEEHWA 133
                      89*********999999888877777*********4443222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3479.24
//
Query:       CDO72868.1  [L=507]
Description: hypothetical protein BN946_scf185002.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-15   56.9   0.0    7.2e-15   55.7   0.0    1.6  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.044   13.6   0.0    1.3  1  HTH_8           Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0     8e-19   7.2e-15      46     196 .]     212     396 ..     177     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 8e-19
  2OG-FeII_Oxy_2  46 gplgwatdgpgyrysekesvdakplspfpeallrlverlvkaag....................pegwspnaalvnfYrdga.riglHqDkees. 118
                     ++ ++  +  +y y+++  +   +++  +e+ ++++e++v+a+                     p  w++n+a  n+Y  g+  ig+H D+ ++ 
      CDO72868.1 212 NSTDDMKEEAQYWYNGRLTDAPPTFPSPMEEACQIIEEIVNAEMrkrrrfplewggypasegeePLIWRANVAASNCYAGGKqCIGYHTDQLTYl 306
                     34444557799*****9888888888888999999999999887***************99998888*************999*********888 PP

  2OG-FeII_Oxy_2 119 aleapivSlSLGasatfrfgkesreeeiiailLesGdllvmggesrkay.Hgvprikkd..tapele..............leelrtrRinlTfR 196
                     ++ ++i+SlSLG+      + + r  ++  i      l++m++ +++++ H+vp+       +p+++              l+e  + Rin+TfR
      CDO72868.1 307 GPYPTIASLSLGEDGQAGDKARCRPGKTDIIQ-----LIIMHASTQEVFkHAVPPQSSIdmFHPSFPppseltddkdvlarLQEASNTRINITFR 396
                     999**********9977655555666666665.....59*****************99656344444555566677778899999*********9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.9e-06     0.044       4      31 ..      23      50 ..      20      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-06
                HHHHHHHHHHHHHTTT-HHHHHHHHTS- CS
       HTH_8  4 evEkelIeaALertgGnkskAArlLGis 31
                e+E++++ +AL +++G + +AA+ L i 
  CDO72868.1 23 EFEQDVLLDALVKSQGDVDAAAKSLQIR 50
                89*********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3402.01
//
Query:       CDO72869.1  [L=171]
Description: hypothetical protein BN946_scf185002.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-40  137.3   0.1    1.3e-39  135.8   0.1    1.7  1  IGPD      Imidazoleglycerol-phosphate dehydratase
  ------ inclusion threshold ------
      0.059   13.7   0.0      0.089   13.1   0.0    1.2  1  DUF4149   Domain of unknown function (DUF4149)
        0.1   12.8   0.1       0.41   10.9   0.0    1.9  2  SbcCD_C   Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.1   2.1e-43   1.3e-39      38     144 .]      46     152 ..      14     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 2.1e-43
                 HHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.--HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHH CS
        IGPD  38 edvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekigeldtelveeffeslaeaagitlhvkvlrgenahhiveal 136
                  d++ialG+a+k+alg+ rgi+R+g+ ++p+Deal+++++d++ rpy+v +  lkrek+g+l+te+++++f s++ aag+tlh++vlrgen+hh +e++
  CDO72869.1  46 HDTAIALGTAFKQALGEVRGIRRYGTGFAPLDEALSRAVIDICSRPYCVTDLGLKREKVGDLSTEMFPHIFYSFSIAAGVTLHIDVLRGENDHHRAESA 144
                 69************************************************************************************************* PP

                 HHHHHHHH CS
        IGPD 137 fKafaraL 144
                 fKa+a a+
  CDO72869.1 145 FKALALAI 152
                 *****996 PP

>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.5e-05     0.089      20      70 ..      92     145 ..      82     155 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
     DUF4149  20 vlfrs..LprhqfgelqsklFplyfglglalsvlllltevavg..seklaseell 70 
                 ++     L r+  g l +++Fp+ f+  ++ ++++l   v++g  + +  +e  +
  CDO72869.1  92 YCVTDlgLKREKVGDLSTEMFPHIFYSFSIAAGVTLHIDVLRGenD-HHRAESAF 145
                 55555335999***************************99999642.22222233 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-05      0.41      43      75 ..      49      82 ..      46      88 .. 0.93
   2 ?   -1.8   0.0      0.62   3.7e+03      44      57 ..     146     159 ..     139     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.9e-05
     SbcCD_C 43 ylalaaalaalyssaeg.repalrlvfLDEAFsk 75
                ++al+ a+ +++++ +g r+   ++  LDEA s+
  CDO72869.1 49 AIALGTAFKQALGEVRGiRRYGTGFAPLDEALSR 82
                689*************9**************987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.62
     SbcCD_C  44 lalaaalaalyssa 57 
                  ala+a++++++++
  CDO72869.1 146 KALALAIRQAIERT 159
                 57888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1177.62
//
Query:       CDO72870.1  [L=703]
Description: hypothetical protein BN946_scf185002.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-228  758.7   0.0   5.2e-228  758.5   0.0    1.0  1  CDC45           CDC45-like protein
  ------ inclusion threshold ------
       0.11   12.0   0.1       0.23   11.0   0.1    1.6  1  Sec_GG          SecD/SecF GG Motif
       0.16   11.7   4.2       0.31   10.7   4.2    1.4  1  SURF2           Surfeit locus protein 2 (SURF2)
       0.22   10.9  11.2       0.35   10.2  11.2    1.2  1  Nop53           Nop53 (60S ribosomal biogenesis)
          1    8.7  11.7          2    7.8  11.7    1.3  1  SDA1            SDA1
        1.9    8.9  13.7        5.6    7.4  13.7    1.8  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  758.5   0.0  1.8e-231  5.2e-228       1     633 [.      39     696 ..      39     698 .. 0.90

  Alignments for each domain:
  == domain 1  score: 758.5 bits;  conditional E-value: 1.8e-231
       CDC45   1 VlilvaldvDalCAariLtsLLkkdliphkivPVsGyedlekaleelveegeelrsvvllnlGalvdle..elle.leegvevyViDshRPwnleNlfg 96 
                 V++lva+dvDalCA+++L++L+k+d+++h+i+PVsG ++le++++el +  ++l+++++ n+Ga++dl+  e+++ ++++ +v+ViDs RP nl+ +fg
  CDO72870.1  39 VIMLVAPDVDALCASKMLADLFKQDDVMHRIIPVSGHAELERIRDELTTY-SDLHTLIMFNMGAILDLPsaEWFGdFPTSLTVHVIDSSRPQNLSSVFG 136
                 89************************************************.*****************98888888*********************** PP

       CDC45  97 sseekerivvfDDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse 195
                 +  + +riv++DDg + e+l+eer+a+e l++ +++d+++  e++e+d+dee+ee+e+e+++d+e+ + + ++kr+s         ++ +++ krr+ e
  CDO72870.1 137 GGANGDRIVIWDDGAV-EDLQEERKAWEVLTYAPDDDSDE--EDSESDSDEEAEEDEDENQDDYEDGTGTPSRKRRS-------IGESGRKEGKRRKVE 225
                 ***************7.******************98666..44444554555555555555555655565666653.......222334455555555 PP

       CDC45 196 psakklrrqlkkerrkyeavlekyysqgtsygesvsslmYsLaselgredndlLWlAIvGltslelserisaeryerlrallrdeVrrlnpss.kteki 293
                     +l+r +++er ++ea+l kyy++gt+yg+s+s +mY La+ l+r dndlLWlAI+Glt+++ ++ris+e+y+++++++ deV+rlnp++ ++  +
  CDO72870.1 226 ----QLNRISREERMQHEARLIKYYRSGTWYGQSASGTMYILATVLERVDNDLLWLAILGLTYQYATSRISREEYDKYQSIYYDEVARLNPAPpSALGD 320
                 ....99999**********************************************************************************87666667 PP

       CDC45 294 etkarspddtsirlseelrllLlRhWsLydSmlhssYvaskLklWsekGrkrLhkLLAkmGvsLaqakqkYthmdlelkreLreklekiapeygLddlv 392
                 + k+++pdd+s+ +seelr++++RhW+Lyd+m+hssYvaskL++W+e+GrkrL++LLAkmG+s+++++q Y+hm  +lk +Lr+kl+++apeygL +l 
  CDO72870.1 321 DFKSQNPDDNSVYASEELRFMMFRHWNLYDAMYHSSYVASKLGIWKERGRKRLTGLLAKMGFSISETQQPYSHMAKDLKLSLRQKLDQLAPEYGLVELA 419
                 88999********************************************************************************************** PP

       CDC45 393 yesFvrsygyra.elsAaDvvealtAlLevgkgv.........................eaksekeaeesekese............eeeeeeeeeeae 453
                 y+sF+r+ygyr+ +lsA D+veal+AlL+++ g+                         + + +++++e+e+                ++++++e++++
  CDO72870.1 420 YPSFMRCYGYRSqPLSAGDAVEALSALLDIAGGTrievevegtrnggewfgggkvweggK-EGRAKDDEREN--VppgvlanvvkaqMQAQADTEDKEN 515
                 ************9******************99999999988888887777666553321.22222222222..2468888999887777888888889 PP

       CDC45 454 eeekeeeewvknFweAydaLdkknidlLkkglelaqslqraivrtgtsliekkqirtlrafrlavlkdgpdlelFthpaaLtkLalwllealresekek 552
                  e +e ++wvknFw+AydaL+  +i+ L+++++l+++lqrai+r+g+s+i+k++i+tlr +r++vl++gpdl+lF hp++L++Lalwl++alr++ + +
  CDO72870.1 516 GEGRELQWWVKNFWAAYDALS--DIERLREAISLSMALQRAIIRQGSSIIDKQDIKTLRGHRVVVLTQGPDLHLFVHPGILARLALWLVDALRDRVEPT 612
                 9999*****************..************************************************************************9998 PP

       CDC45 553 k.k...kkkkllPlVlasldeergtylVvGvtgkaasggdvekNrFglaFqevaeetgarvridsFessvievrkeDlakFlekL 633
                   +   +k+k lP+Vla+l+e+ +ty+VvGvtg a++++dv+kN+FglaF +++e+++ar+r+ +F++sv+e++k+Dl+ Fle+L
  CDO72870.1 613 ApAyarSKRKALPFVLACLNEKAETYIVVGVTG-APDFDDVRKNEFGLAFLDAKERCNARTRHGTFDTSVLEINKDDLKVFLETL 696
                 855999999************************.99***********************************************99 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   7.7e-05      0.23      12      25 ..     447     460 ..     447     462 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.7e-05
                 TTTS-EEEEEEEE- CS
      Sec_GG  12 lDFtGGthielqfd 25 
                 lD +GGt+ie++++
  CDO72870.1 447 LDIAGGTRIEVEVE 460
                 8***********98 PP

>> SURF2  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.2    0.0001      0.31     161     232 ..     150     223 ..     136     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
       SURF2 161 dsmsdlypdelFtekpvgkrededdkedfetdeeeeeakvsde..ekeemeveksklqkrkklqsgssskkfkk 232
                 +   dl ++   +e   +++ d++d+ed+e+d++ee+++ +de  ++ e    ++++++r   +sg ++ k +k
  CDO72870.1 150 GAVEDLQEERKAWEVLTYAPDDDSDEEDSESDSDEEAEEDEDEnqDDYEDGTGTPSRKRRSIGESGRKEGKRRK 223
                 556699999999999*******99999****9999988888885322233333445555544455555555555 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  11.2   0.00012      0.35     216     305 ..     153     242 ..     150     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
       Nop53 216 eklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeeeeeeeeeseeeeklnapvkkkpkrKTkaqRnkekrrkeeekeeke 305
                 e l+++r++++      ++   e+++e+d+++e ee+e+e++++ e+ +++ s ++ ++ +  +k+ kr   +q n++ r+++ + e++ 
  CDO72870.1 153 EDLQEERKAWEVLTYAPDDDSDEEDSESDSDEEAEEDEDENQDDYEDGTGTPSRKRRSIGESGRKEGKRRKVEQLNRISREERMQHEARL 242
                 556777777777777777776666777775666666667767776776666666689999999999999999999999999988887765 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.7   0.00067         2      97     198 ..     155     235 ..     130     248 .. 0.39

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00067
        SDA1  97 deddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeaseeekkkeke 195
                  +++ + wev +   + +ds+++            +s++++dee ee+e+e++++ e+++ +   + ++ +  e+ ++++k+       + e+ ++++ 
  CDO72870.1 155 LQEERKAWEVLTYAPD-DDSDEE------------DSESDSDEEAEEDEDENQDDYEDGTGTP--SRKRRSIGESGRKEGKR------RKVEQLNRISR 232
                 3344445555443222.333222............2222222222222222222222222222..11222222222222222......22222222222 PP

        SDA1 196 eek 198
                 ee+
  CDO72870.1 233 EER 235
                 222 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  13.7    0.0019       5.6       9      39 ..     175     199 ..     164     214 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
  CENP-B_dimeris   9 gedsesesdeeeeeeeedeededeeddeddd 39 
                      edses+sdee ee+e++++d+       +d
      CDO72870.1 175 EEDSESDSDEEAEEDEDENQDDY------ED 199
                     34555555555444433333332......22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 4590.38
//
Query:       CDO72871.1  [L=449]
Description: hypothetical protein BN946_scf185002.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-47  162.3   0.1    1.6e-47  162.0   0.1    1.2  1  Peptidase_M24  Metallopeptidase family M24
     0.0053   17.4   0.0     0.0086   16.7   0.0    1.4  1  Creatinase_N   Creatinase/Prolidase N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.1   1.7e-51   1.6e-47       3     208 ..     227     427 ..     225     428 .. 0.92

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 1.7e-51
                    HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEEEC CS
  Peptidase_M24   3 irkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTvlv 98 
                    ++ +++++  a++a+ + +k g+ e e+ ++i+ + l + g +g  f   + +genaa++h++ +dr l + d+vlid+g+ ++gy+sD+trT+++
     CDO72871.1 227 LKCVNEVTVLAIRATRDYMKIGMHESEARQLIQSA-LTAAGLQGA-F-ALTLFGENAALPHGSGTDRALGKHDFVLIDCGGTLHGYHSDVTRTFAL 319
                    5778999**************************98.888887775.5.47********************************************88 PP

                    SSGSH...HHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESSSTTCSSB--TTBEEEEEEEEE CS
  Peptidase_M24  99 Gkftp...eqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsresndgrkleeGmvftiEpgiy 191
                      +t+    +  +++ v +aq++a++a+k G+ ++ id+aar v+++ g++++f+h+lGHg+Gle+h++ p++   +++++ l  G++f+ Epgiy
     CDO72871.1 320 P-ETEvprSYLPIWRMVHKAQHRALAAAKNGTVAASIDRAARSVIQKSGYGDYFTHRLGHGIGLETHES-PYLV--GGSEDILLTGHTFSDEPGIY 411
                    4.3333335999*******************************************************98.**87..688***************** PP

                    EETTTEEEEEBEEEEEE CS
  Peptidase_M24 192 fapgeggvriedtvlvt 208
                     ++g+ gvr+ed +++ 
     CDO72871.1 412 -IEGKVGVRLEDCFYIN 427
                    .99999******99986 PP

>> Creatinase_N  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.6e-07    0.0086       1     131 [.      72     217 ..      72     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.6e-07
                   HHHHHHHHHHHTT-SEEEEECCHHHHHHHSS......-SSSEEEEEE....ESSCEE.........EEEECTTHHHHHHHH....TTSEEEEEST.. CS
  Creatinase_N   1 RlerlralmeekgldallvtspenlrYltGfa...tetgsrglalvv....tadgal.........llvdalryteaaees...atveevveydd.. 76 
                   R ++l++ +++ g++a++  + ++  Y+ +     +   +r+l+l+v                    l++a+++t+a+            v +++  
    CDO72871.1  72 RQDNLAQTLHALGASAYVAEPGASAAYFANISglhWGLSERPLLLIVrptqD----EngdvranisVLTPAFEETRAKLLPipsEAGVTYVAWPEdq 164
                   7899***********************85555554**********9966441....2245677777**************95543444445555555 PP

                   .HSSHHHHHHHHHHHHT-EEEE-TTSSBHHHHHHHHHHCTTSEEEETHHHHHHHHS CS
  Creatinase_N  77 .pvealadllkellesekrvgveldaltvafyealkealpdaelvdaselieelRv 131
                    p +   +ll +l  ++  + ++  a+    +  l+ a+p+a+++ a   +++lR+
    CDO72871.1 165 sPFSRALSLLPDL--DGAWIFMDG-AVRTFITAGLQHAAPSAQVTIAPVEVRRLRE 217
                   5666666666666..435555555.578888999******9999998888999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3120.46
//
Query:       CDO72872.1  [L=455]
Description: hypothetical protein BN946_scf185002.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-51  172.2   0.0    1.3e-50  171.6   0.0    1.3  1  DEAD        DEAD/DEAH box helicase
    1.7e-30  105.6   0.0      4e-30  104.4   0.0    1.7  1  Helicase_C  Helicase conserved C-terminal domain
    4.3e-07   30.1   0.0    6.6e-07   29.5   0.0    1.2  1  ResIII      Type III restriction enzyme, res subunit
    0.00012   21.9   0.1    0.00038   20.2   0.0    1.9  2  AAA_30      AAA domain
  ------ inclusion threshold ------
       0.11   12.6   0.5       0.17   11.9   0.5    1.2  1  SP24        Putative virion membrane protein of plant and ins


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   3.7e-54   1.3e-50       1     176 []      42     209 ..      42     209 .. 0.97

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 3.7e-54
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQae++p++l+g+d+++ a TGsGKT+af++p+lq+++e  + +g  a +++PtreLa q++++++++++ +++r+  iiggv+   q+ +l ++++
  CDO72872.1  42 TEIQAEVLPHALQGRDIIGVASTGSGKTAAFALPILQKLWE--EPKGLFACVLAPTRELAVQIAQQFESLGSAMGVRCATIIGGVDMMAQKVALAKKPH 138
                 79**************************************8..99*************************************************999** PP

                 EEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 ivv+tpgrl d+l +t+ ++l++++flVlDEadrlld++f++ i++il+ +       +++r++ ++SAT++++v kl
  CDO72872.1 139 IVVATPGRLNDHLeETKGFSLRSLKFLVLDEADRLLDMDFGPIIDKILKVI-------PKERTTYLFSATMTTKVAKL 209
                 *************77888*********************************.......67788*********888875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   1.1e-33     4e-30       2     111 .]     244     352 ..     243     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 1.1e-33
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 k  +l++l  ++  ++ i+if++t+ ++++++++l++ g+ +++lhg+l q+ r+ +l++f++g ++vL+atdva+rG+dip+v++Vin+d+p+  ++y
  CDO72872.1 244 KDVHLIYLA-NTLAQNSIIIFTRTVHDAQRLSIMLRTLGFPAVPLHGQLGQSARLGALTKFKSGGRKVLVATDVASRGLDIPSVDVVINYDIPTHSKDY 341
                 566788886.899*************998899999999************************************************************* PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+r+GRt+Rag
  CDO72872.1 342 IHRVGRTARAG 352
                 *********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.9e-10   6.6e-07      27     169 ..      58     202 ..      30     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.9e-10
                 EEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH..... CS
      ResIII  27 glikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeeee 123
                 ++ ++ TG+GKT    + + ++l+++ k   + +l+p+++l  q  ++f+++ s    +  +++ g   +a k   +++ +i+v+t  +l+ ++    e
  CDO72872.1  58 IIGVASTGSGKTAAFaLPILQKLWEEPKGLFACVLAPTRELAVQIAQQFESLGSAMGVRCATIIGGVDMMAqKVALAKKPHIVVATPGRLNDHL----E 152
                 555789******999677888888887777999*********************9988866666666666657778999***************....8 PP

                 ...HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT-.--SEEEEEESS- CS
      ResIII 124 eseellrdrfdviiiDEaHrlgakk...swreilekf.keavllglTATp 169
                 e++ ++  + ++++ DEa rl +++    + +il+ + ke +   ++AT+
  CDO72872.1 153 ETKGFSLRSLKFLVLDEADRLLDMDfgpIIDKILKVIpKERTTYLFSATM 202
                 89999999999************854447777777775556777788886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     1e-07   0.00038       5      97 ..      44     170 ..      40     186 .. 0.74
   2 ?   -3.0   0.0       1.4   4.9e+03      47      81 ..     258     295 ..     251     314 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKtta..lkalreaweaa.ggrviglAptgkaAkvLae.......elgieastiakllkrlk............ 81 
                  Qa+++ ++l+++d   + ++  G+GKt a  l  l+++we+  g   ++lApt + A ++a+       ++g++++ti   ++ ++            
  CDO72872.1  44 IQAEVLPHALQGRD--IIGVASTGSGKTAAfaLPILQKLWEEPkGLFACVLAPTRELAVQIAQqfeslgsAMGVRCATIIGGVDMMAqkvalakkphiv 140
                 59999******999..899999******76115678******9899999***********995344333366678888877776666556666666666 PP

      AAA_30  82 ..............grarlepgtllivDEa 97 
                               +  +l++ + l+ DEa
  CDO72872.1 141 vatpgrlndhleetKGFSLRSLKFLVLDEA 170
                 666666666666653355555566666666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
      AAA_30  47 grviglAptgkaAkvLa...eelgieastiakllkrlk 81 
                  ++i+++ t   A++L+   + lg++a  ++  l + +
  CDO72872.1 258 NSIIIFTRTVHDAQRLSimlRTLGFPAVPLHGQLGQSA 295
                 56788888888888888666677888877777776555 PP

>> SP24  Putative virion membrane protein of plant and insect virus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   4.8e-05      0.17      29     118 ..     185     278 ..     177     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.8e-05
        SP24  29 lgkfltkkqtknsllkwvkenilkfigllvfiPvildapkkervvlalaavlyvivlPertv.leYliqsl...aLhlylkaktqntRllilvl 118
                 + k + k+ t++ +   ++++++k+  +  + Pv +++++k  +v +l+ +  +i lP+++v l Yl+  l   ++ ++ ++ ++ +Rl i++ 
  CDO72872.1 185 ILKVIPKERTTYLFSATMTTKVAKLQRASLSNPVRIEVNSKYSTVSTLLQYYLLIPLPQKDVhLIYLANTLaqnSIIIFTRTVHDAQRLSIMLR 278
                 566677888899999999999999999***********************************568*99988333599999********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3258.62
//
Query:       CDO72873.1  [L=464]
Description: hypothetical protein BN946_scf185002.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00017   22.3   2.6        3.5    8.6   0.1    3.7  3  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0011        20       4      35 ..     245     279 ..     242     279 .. 0.78
   2 !    5.3   0.0    0.0023        42      12      38 .]     331     368 ..     319     368 .. 0.73
   3 !    8.6   0.1    0.0002       3.5       9      35 ..     431     458 ..     422     459 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0011
                 EEEEESS..SSEEEEEEETTSSE.EEEEETTSEEE CS
        WD40   4 lrtltGH..ssvtslafspdgaw.lasGsdDgtvr 35 
                 + ++ +   ss++s++f+p  ++ + ++ +D+tvr
  CDO72873.1 245 QMHWPATsrSSISSIKFDPIDSFsVYTSAYDCTVR 279
                 56666665567************6668888****8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0023
                 S..........EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  12 s..........vtslafspdgaw.lasGsdDgtvriWd 38 
                 +          +  ++++p  ++ l+++s  +  r+Wd
  CDO72873.1 331 HarryelsdqkIGTVSVNPTRPYfLVTASNSRDMRVWD 368
                 334566555667778899999995579999*******9 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0002
                 SS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvr 35 
                 +H +svts  ++p g+ ++s s+D ++r
  CDO72873.1 431 AHnKSVTSAYWDPRGRSILSTSYDDNLR 458
                 79899*************9999898887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3619.85
//
Query:       CDO72874.1  [L=1197]
Description: hypothetical protein BN946_scf185002.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-37  127.4   0.0    1.6e-36  125.4   0.0    2.2  2  TRAPPC10  Trafficking protein particle complex subunit 10, TR


Domain annotation for each model (and alignments):
>> TRAPPC10  Trafficking protein particle complex subunit 10, TRAPPC10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.41   7.4e+03      29      58 ..     660     690 ..     644     704 .. 0.64
   2 !  125.4   0.0     9e-41   1.6e-36       1     156 []    1031    1178 ..    1031    1178 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.41
    TRAPPC10  29 aeeslrvgqpislelvitt.srrwesedeee 58 
                 ++ s+ + ++ s+e+++ +   +w+ +++ +
  CDO72874.1 660 PSSSAGTYSLFSTEISLARlHFQWKHMKTVK 690
                 4556666667777777777777777775543 PP

  == domain 2  score: 125.4 bits;  conditional E-value: 9e-41
    TRAPPC10    1 pvdvPsvdivhtvdlsllsqevsskk.psaeeslrvgqpislelvittsrrwesedeeeadenettklmYevvdnsdtWlvgGkkrgdfsvpvkege 96  
                  pvdvP+++i++++ l++l++++ss k ++ ++ l++gqpis+ l++tts +w+ +++    + e+++++Y+++d +++Wlv+G+krgdf++  k+ge
  CDO72874.1 1031 PVDVPQMHILASARLQILENPFSSEKlQKRTRPLYAGQPISALLTVTTSFHWAPPEDT---KVESYNMRYDIEDLTQDWLVSGRKRGDFQA--KDGE 1122
                  8**********************9997778899**********************665...579***************************..**** PP

    TRAPPC10   97 shtvqlelipLkaGeLllPkVevkkllphskqkgaamprsqelpsgevdnsnggeqvlVl 156 
                  + +v+++li+L++GeL lPkV v++l+      g+ ++rs   p +e+ + +g+e+vlVl
  CDO72874.1 1123 TYSVPITLIALHHGELALPKVGVTALP----IPGEHRMRSTIIPGCETHQVHGAEKVLVL 1178
                  ***************************....89**************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8339.50
//
Query:       CDO72875.1  [L=463]
Description: hypothetical protein BN946_scf185002.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-102  342.2   0.0   4.7e-102  341.6   0.0    1.3  1  Lyase_1   Lyase
    2.5e-24   85.8   0.2    6.1e-24   84.6   0.2    1.7  1  ASL_C2    Argininosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.6   0.0  5.2e-106  4.7e-102       1     312 []      13     307 ..      13     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 341.6 bits;  conditional E-value: 5.2e-106
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekv 99 
                 grft+k+d+lm +f++++r+++r+ ++di +++a++ka+a ++++++ee+ +i+++l +v +e++++ +f++  ++e+++ta++++l+e+ig       
  CDO72875.1  13 GRFTGKTDPLMHEFNQSLRYDKRMYAADIAGSIAYAKALARVGILTQEEQRKIVDGLTAVCKEWEQG-TFKIHADDEDIHTANERRLTELIG------- 103
                 89*****************************************************************.************************....... PP

                 GIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEET CS
     Lyase_1 100 epndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvell 198
                    +k+htg+S+nDqv+T++rl+l  ++++ +++ l+ Li++++e+a ++kd++++G+Thlq+ +P++++++l ++a a++ d+erl++l +r++v++l
  CDO72875.1 104 PLGGKLHTGRSRNDQVATDMRLWLLGEVRA-VEKGLKGLIRVMVERADKEKDILMPGYTHLQRGQPIRWSHFLLSHAFAFRADLERLQQLIPRISVLPL 201
                 999*************************66.******************************************************************** PP

                 TTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBT CS
     Lyase_1 199 gggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNP 297
                 g+g+++g+++ +d+e   ++akel+ +++   +a+ns+  vsdrD++ve++ + +l +t++s++aeDl+++s+ e+g+v+ls+a+s+ GSSiMP+K+NP
  CDO72875.1 202 GSGALAGNPFAVDRE---FLAKELG-FES---VAENSMYGVSDRDFIVEFMMWGSLAMTHISRMAEDLIIYSTAEFGFVTLSDAYST-GSSIMPQKKNP 292
                 ***************...*******.999...*******************************************************.*********** PP

                 HHHHHHHHHHHHHHH CS
     Lyase_1 298 vqlElltgvagrvvG 312
                 ++lEll+g++grv+G
  CDO72875.1 293 DSLELLRGKSGRVFG 307
                 **************9 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.2   6.8e-28   6.1e-24       3      69 .]     371     437 ..     370     437 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 6.8e-28
                 THHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHTT CS
      ASL_C2   3 tATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasVa 69 
                 +ATdlA+yLvrkG+pFRe+H+++grav+lae+++++l++l+l++++++++ +++dv++++d+easV+
  CDO72875.1 371 LATDLAEYLVRKGIPFRETHHVSGRAVALAEARKCQLNQLSLQDFRSLHEQFDQDVFNVFDFEASVE 437
                 7****************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3622.55
//
Query:       CDO72876.1  [L=324]
Description: hypothetical protein BN946_scf185002.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-33  115.1  10.8    3.2e-33  115.1  10.8    1.7  2  Syntaxin       Syntaxin
    2.4e-11   43.5   1.7    2.4e-11   43.5   1.7    2.1  2  SNARE          SNARE domain
    1.6e-06   28.4  10.1    1.6e-06   28.4  10.1    2.6  2  Syntaxin_2     Syntaxin-like protein
    0.00065   19.5   7.1    0.00072   19.4   6.0    1.6  1  Use1           Membrane fusion protein Use1
     0.0017   16.4   2.3     0.0017   16.4   2.3    2.2  2  Prominin       Prominin
     0.0034   17.2   0.8     0.0034   17.2   0.8    2.4  2  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
     0.0054   16.7   0.2      0.015   15.3   0.2    1.7  1  VitD-bind_III  Vitamin D binding protein, domain III
     0.0066   16.3   1.9     0.0066   16.3   1.9    2.5  2  SKA1           Spindle and kinetochore-associated protein 1
     0.0095   14.7   4.0      0.018   13.8   1.2    2.2  2  DUF2207        Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
       0.02   15.3   2.1      0.031   14.7   0.4    2.2  1  DUF5383        Family of unknown function (DUF5383)
      0.022   15.1   1.3      0.022   15.1   1.3    3.8  2  V-SNARE        Vesicle transport v-SNARE protein N-terminus
      0.034   14.7   8.9       0.12   12.8   0.1    3.2  3  Spectrin       Spectrin repeat
      0.041   13.7   1.0       0.86    9.5   0.0    3.1  3  DASH_Dam1      DASH complex subunit Dam1
      0.057   13.4  14.3      0.081   12.9   2.3    2.7  3  Laminin_II     Laminin Domain II
       0.12   12.5   1.7       0.19   11.9   0.1    2.2  1  TPR_2          Tetratricopeptide repeat
       0.14   12.7   3.8        0.2   12.2   0.3    2.7  3  Arc_PepC_II    Archaeal Peptidase A24 C-terminus Type II
        0.2   10.5   9.0        0.4    9.5   8.9    1.5  1  LMBR1          LMBR1-like membrane protein
       0.28   11.2   2.5       0.71    9.8   0.3    2.4  2  DUF4743        Domain of unknown function (DUF4743)
       0.39   11.0  10.7        0.2   11.9   2.2    3.4  3  ABC_tran_CTD   ABC transporter C-terminal domain
       0.44   10.8   2.5        2.4    8.4   0.1    2.2  2  PBP_N          Penicillin-binding protein N-terminus
        0.9    9.4   8.5       0.64    9.9   1.4    2.8  2  EMP24_GP25L    emp24/gp25L/p24 family/GOLD
       0.96    9.9   7.1         34    4.9   3.6    3.6  4  FlaC_arch      Flagella accessory protein C (FlaC)
       0.99    8.9   6.8        1.8    8.0   1.6    2.2  2  Allexi_40kDa   Allexivirus 40kDa protein
        1.5    7.4  10.2      0.032   12.9   1.5    2.2  3  Tweety         Tweety
        1.7    8.7  15.8       0.46   10.5   1.6    2.7  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
        2.3    8.6   6.0       0.29   11.4   0.7    2.4  2  Orf78          Orf78 (ac78)
        2.5    7.7   5.1       0.94    9.1   1.3    2.1  2  UL45           UL45 protein, carbohydrate-binding C-type lect
        2.7    6.9   5.4       0.53    9.2   1.0    2.0  2  MMPL           MMPL family
        2.8    8.0  11.5       0.95    9.5   1.3    3.3  3  DUF1664        Protein of unknown function (DUF1664)
          3    7.9   8.6          3    7.9   0.2    3.3  3  COG2           COG (conserved oligomeric Golgi) complex compo
        3.5    7.5  12.7       0.33   10.8   2.3    2.8  3  PCRF           PCRF domain
        4.1    7.0  15.6       0.59    9.8   1.5    2.7  2  Lebercilin     Ciliary protein causing Leber congenital amaur
        9.2    5.4  11.7       0.62    9.3   0.7    2.5  2  TMPIT          TMPIT-like protein


Domain annotation for each model (and alignments):
>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1  10.8   5.9e-36   3.2e-33       1     199 [.      64     258 ..      64     259 .. 0.93
   2 ?   -1.6   0.1       3.4   1.9e+03       7      25 ..     261     279 ..     260     297 .. 0.51

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 5.9e-36
    Syntaxin   1 leeffkeveeikkeiekleeevkklkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrk 98 
                 + +f++e+ +i+++i++ +++v+++++ +++s+++t+  + + + +++e+++++ +  ++ +++r++aL+k+  + +  +        ir++qt  +++
  CDO72876.1  64 MAAFYNEIASIQDDIRTFNDNVTRISDLHSRSLNATDDVQNQrVNQQLEELVADTSALSNVLRRRIKALQKQGGSGRDGQ--------IRNQQTGLVKQ 154
                 789**********************************999999****************************999888554........99********* PP

    Syntaxin  99 klkevmteynelrekireeykerieRrlevtGkevseeeieelietge.sevflqkllqeq.rga.realseieeRhkevlelekslkeLhqlFldmav 194
                 k+ e++++y++++++ r++yk+r+eR+++++  ++s ee+  ++++++  ++f q l++ +  g+ r+a +e++eRh +++++ek l eL qlF dm++
  CDO72876.1 155 KFMEAIQNYQTVEQQYRQKYKQRLERQYKIVKPDASPEEVKAVVDDDQgGQIFGQALMNSNrYGEaRSAYREVQERHADIKKIEKTLTELAQLFNDMSI 253
                 *********************************************999445555666666655668********************************* PP

    Syntaxin 195 LVEeQ 199
                 LVE+Q
  CDO72876.1 254 LVEQQ 258
                 ****9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.4
    Syntaxin   7 eveeikkeiekleeevkkl 25 
                 ++ +i++ ++++e++v+  
  CDO72876.1 261 QITAINDTVQEVEKDVETG 279
                 4556666666666666543 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   1.7   4.4e-14   2.4e-11       1      52 [.     260     311 ..     260     312 .. 0.98
   2 ?    3.3   1.0      0.15        81      40      52 ..     307     319 ..     307     320 .. 0.54

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 4.4e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvv 52 
                 e++  I + V++++ +ve + + + kav +++ +Rk+ +i+++++++il+++
  CDO72876.1 260 EQITAINDTVQEVEKDVETGLNYTTKAVDHARAARKKRWICFILCIVILIII 311
                 7999***********************************************8 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
                 XXXXXXXXXXXXX CS
       SNARE  40 iillilviillvv 52 
                 i+++i++i+ +vv
  CDO72876.1 307 ILIIIAIIVAVVV 319
                 4566666666665 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  10.1     3e-09   1.6e-06       1      99 [.      74     176 ..      74     178 .. 0.90
   2 ?    4.4   1.5     0.086        47      36      66 ..     231     261 ..     213     296 .. 0.57

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3e-09
  Syntaxin_2   1 issnlqkinsnvstleklvkq.Lgtkkd..teelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkk.dfkealqeFqkiqrqyae 95 
                 i++ + ++n nv+ +  l +  L+   d  +++++++l+el+ +++ l++   +++k l++   s+ d q + q+  L+k +f ea+q++q + +qy++
  CDO72876.1  74 IQDDIRTFNDNVTRISDLHSRsLNATDDvqNQRVNQQLEELVADTSALSNVLRRRIKALQKQGGSGRDGQIRNQQTGLVKqKFMEAIQNYQTVEQQYRQ 172
                 67889**************9988888888889999**************************999999988888888876626***************** PP

  Syntaxin_2  96 kekq 99 
                 k kq
  CDO72876.1 173 KYKQ 176
                 *998 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.086
  Syntaxin_2  36 helieeinelikktnellkklsqldnsssds 66 
                 h  i++i +++++  +l++++s l ++++ +
  CDO72876.1 231 HADIKKIEKTLTELAQLFNDMSILVEQQDEQ 261
                 4455555555666666666666655555433 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   6.0   1.3e-06   0.00072      80     242 ..     143     319 ..      86     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.3e-06
        Use1  80 alanqllapgeeskeekeeskereeaskelrqkekakyqkel.rkellgkndsssspekekeskkk.................ksdedldavlkkhenl 160
                 +++nq+          k++  e  +  ++++q+ ++ky++ l r+  + k d+s +++k+  +  +                 +++ +  +v ++h ++
  CDO72876.1 143 QIRNQQTG------LVKQKFMEAIQNYQTVEQQYRQKYKQRLeRQYKIVKPDASPEEVKAVVDD-DqggqifgqalmnsnrygEARSAYREVQERHADI 234
                 22222222......33455556667778999999988887762455555666554444333333.25999**********9966666667777777666 PP

        Use1 161 qEklaeemlsLarnLKenslaasq...iikkDtetlsksekaadqnlaslkkeserleehskskvkcllwlllfvvlv.vFismvl 242
                   k+   + +La+ + ++s + +q    i   + t+++ ek +++ l+ + k+ + +   +k+++ c+++ +++++++ + +++v+
  CDO72876.1 235 -KKIEKTLTELAQLFNDMSILVEQqdeQITAINDTVQEVEKDVETGLNYTTKAVDHARAARKKRWICFILCIVILIIIaIIVAVVV 319
                 .589999999999999988877652227999999*************************999999999876666555505555554 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.2     0.054        29     323     669 ..      84     174 ..      38     188 .. 0.41
   2 !   16.4   2.3   3.2e-06    0.0017     338     434 ..     226     315 ..     212     320 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.054
    Prominin 323 vlealeevletnlssivkeglarlneipekvknqtaevvpdlkkalakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwligli 421
                  ++++ ++   +l+ +                                                                                   
  CDO72876.1  84 NVTRISDLHSRSLNAT----------------------------------------------------------------------------------- 99 
                 2222222222222222................................................................................... PP

    Prominin 422 vcsllllivvililgLlcGilGlsrtatptdrgcskntGasfLlvgvglsFlffsllmlvvlltFlvGlnvyklvCeplesneLfrvlDtpgllpeldL 520
                                                                                                                    
  CDO72876.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

    Prominin 521 srllskklkknltisevikaCkanesifkvLrlnnlydieellnikklteeiqkelenlkvdlsnlelLteeerkdLeklresglskihsslyleqlck 619
                                                                                                               +++++
  CDO72876.1 100 ----------------------------------------------------------------------------------------------DDVQN 104
                 ..............................................................................................23333 PP

    Prominin 620 kltkvnletlaekleelanelsngk....................knlkqslkneaqdlraiqqelvlpl 669
                 + ++ +le+l +++ +l+n l ++                       +kq++ ++ q+ ++++q++ ++ 
  CDO72876.1 105 QRVNQQLEELVADTSALSNVLRRRIkalqkqggsgrdgqirnqqtGLVKQKFMEAIQNYQTVEQQYRQKY 174
                 3333333333333333333332222223333333333333333333333333333333333333333333 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.2e-06
    Prominin 338 ivkeglarlneipekvknqtaevvpdlkkalakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwliglivcsllllivvili 434
                  v+e  a++++i+++++ ++a++++d+   ++++ eqi  +      +++++v +d+e+  +++ ++ d    + k+rw i+ i+c+++l+i+ i +
  CDO72876.1 226 EVQERHADIKKIEKTLT-ELAQLFNDMSILVEQQDEQITAIN-----DTVQEVEKDVETGLNYTTKAVDHARAARKKRW-ICFILCIVILIIIAIIV 315
                 56666677777766654.566777777777777777765544.....55566777777666677777777777777777.57888888888887765 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4      0.23   1.2e+02      93     122 ..      73     101 ..      34     140 .. 0.49
   2 !   17.2   0.8   6.2e-06    0.0034     110     170 ..     214     274 ..     185     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.23
                 HHH..............HHHHHHHHHHHHH CS
   MCPsignal  93 aliieiqkeindsvesleetrqrveegsel 122
                 ++  +  +  nd v+ +++ ++r  ++++ 
  CDO72876.1  73 SIQDD-IRTFNDNVTRISDLHSRSLNATDD 101
                 11111.112222222333333222222222 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 6.2e-06
                 HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 110 eetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 ++   ++ ++  +v+e + ++k+i ++ +e+a+l ++++  +e+q + i+ +n++v+ev+k
  CDO72876.1 214 SNRYGEARSAYREVQERHADIKKIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEK 274
                 3444678888999*********************************************987 PP

>> VitD-bind_III  Vitamin D binding protein, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   2.8e-05     0.015      13      40 ..     173     200 ..     164     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-05
  VitD-bind_III  13 eyKkrlaeklkkklPeaspeelkelvek 40 
                     yK+rl+ ++k   P+aspee+k++v+ 
     CDO72876.1 173 KYKQRLERQYKIVKPDASPEEVKAVVDD 200
                    6***********************9985 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   4.5      0.65   3.5e+02      14     101 ..     100     194 ..      61     215 .. 0.61
   2 !   16.3   1.9   1.2e-05    0.0066      12      77 ..     221     287 ..     210     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.65
                 ..........XXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  14 inqdpallkedlskieaevsaleellnklkkelqee......eeaikklkkeieaslkqqek.lqhlkenlpshlpkktaassaeeskssspeee 101
                 ++ +++  ++ l+++ a+ sal + l++  k+lq++       ++ ++++ ++++++ +  +  q +++++ ++ +++ + + + +++++spee 
  CDO72876.1 100 DDVQNQRVNQQLEELVADTSALSNVLRRRIKALQKQggsgrdGQIRNQQTGLVKQKFMEAIQnYQTVEQQYRQKYKQRLERQYKIVKPDASPEEV 194
                 34444444666666666666666666666666666522222234555555556555555555556666666666555555555555555555544 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.2e-05
                 ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXX CS
        SKA1  12 rainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek.lqhlkenl 77 
                 r+  ++ +  + d++kie+++++l +l n++   ++++ e+i  +++ +++  k  e  l+++ + +
  CDO72876.1 221 RSAYREVQERHADIKKIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVETgLNYTTKAV 287
                 555555566688*************************************999988888777776665 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.7       0.2   1.1e+02     306     380 ..     105     182 ..      82     187 .. 0.52
   2 !   13.8   1.2   3.4e-05     0.018     246     403 ..     179     318 ..     160     323 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
     DUF2207 306 tilkkndeeldpyEkalldlLfdkseeg.ks.lkeikkyakkskk..kakkfkkalkkwksavkkkergyfdkkgkkkl 380
                 ++++++ eel  +  al ++L + ++   k+  ++   +++++++   ++kf +a++ ++  v++++r+ ++++ ++++
  CDO72876.1 105 QRVNQQLEELVADTSALSNVLRRRIKALqKQgGSGRDGQIRNQQTglVKQKFMEAIQNYQT-VEQQYRQKYKQRLERQY 182
                 3444444444444444444444333333222222223333333335577777777777777.66666666666555444 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.4e-05
     DUF2207 246 dpeYerdvPedlsPavvgylvkgdkvdengltAtlldLavkgyitieeekkkkkkgkdtltilkkndeeldpyEkalldlLfdkseegkslkeikkyak 344
                 +++Y    P d sP +v ++v+ d+  ++ +  +l++  + g  +               + +++  ++ +++Ek+l +l +        ++++   ++
  CDO72876.1 179 ERQYKIVKP-DASPEEVKAVVD-DDQGGQIFGQALMNSNRYGEARSAY------------REVQERHADIKKIEKTLTELAQ-------LFNDMSILVE 256
                 566655555.666666666666.4455556666666655555444333............3344456788999999955555.......3466666777 PP

     DUF2207 345 kskkkakkfkkalkkwksavkk.....kergyfdkkgkkklkklsalglgliilglilillall 403
                 ++++  + +++++++++++v+      +  +  d +  +++k+++ ++l ++il++i+i++a++
  CDO72876.1 257 QQDEQITAINDTVQEVEKDVETglnytT--KAVDHARAARKKRWICFILCIVILIIIAIIVAVV 318
                 7777999999999999999999887442..3333333333334444444444444444444433 PP

>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   5.7e-05     0.031      29     118 ..     226     319 ..     210     322 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.7e-05
     DUF5383  29 eipeeqkdLtFtkkekeeaeelkesLfassekesntiaakakelgLfseekes...vkqsateqes.eeksnlLpillillivllivvllivli 118
                 e+ e   d++  +k  +e ++l + +++  e++++ i+a  + ++  +++ e    ++++a ++   ++k  ++ ++l ++i+++i+++++v++
  CDO72876.1 226 EVQERHADIKKIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVETglnYTTKAVDHARaARKKRWICFILCIVILIIIAIIVAVVV 319
                 466666666666677777777777777777777777777777776666665532226677777777799*********************9986 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   6.8         2   1.1e+03       9      78 ..     126     175 ..     118     183 .. 0.46
   2 ?   15.1   1.3     4e-05     0.022      17      51 ..     222     258 ..     214     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2
     V-SNARE   9 ksklarlsslageerkaalreiekkldeaeelldqMelEvrnlpsserasykaklreykselkklkkelk 78 
                 +++++ l+++ g+ r  ++r+ ++ l                    +++++++ +++y++  +++++++k
  CDO72876.1 126 RRRIKALQKQGGSGRDGQIRNQQTGL--------------------VKQKFMEAIQNYQTVEQQYRQKYK 175
                 55555555555555555555555444....................333333444444443333333333 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4e-05
     V-SNARE  17 slage..erkaalreiekkldeaeelldqMelEvrnl 51 
                 s+++e  er+a +++iek l e+ +l++ M++ v++ 
  CDO72876.1 222 SAYREvqERHADIKKIEKTLTELAQLFNDMSILVEQQ 258
                 4555334************************999876 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00022      0.12      42     104 ..      70     133 ..      41     134 .. 0.83
   2 ?   -1.6   0.2         7   3.8e+03      65      86 ..     158     179 ..     144     190 .. 0.56
   3 ?    5.4   0.4     0.045        25      69     103 ..     228     262 ..     219     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  42 khkaleaelaaqqervkalnelaekl.ldeghsaseeieerleelnerWeeLkelaaerkqkLe 104
                 +   +++++++  ++v+++ +l ++   +  + ++++++++leel     +L+  + +r ++L+
  CDO72876.1  70 EIASIQDDIRTFNDNVTRISDLHSRSlNATDDVQNQRVNQQLEELVADTSALSNVLRRRIKALQ 133
                 4556778888888888888888777647777*******************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 7
                 HHHHHTTHTTHHHHHHHHHHHH CS
    Spectrin  65 eklldeghsaseeieerleeln 86 
                 e++++++  ++++ ++  + l+
  CDO72876.1 158 EAIQNYQTVEQQYRQKYKQRLE 179
                 3334444444444444444444 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.045
                 HTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  69 deghsaseeieerleelnerWeeLkelaaerkqkL 103
                 +e h + ++ie++l el + + +++ l++++++++
  CDO72876.1 228 QERHADIKKIEKTLTELAQLFNDMSILVEQQDEQI 262
                 6789999*****************99999998875 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0016      0.86       3      27 ..      69      93 ..      67      98 .. 0.90
   2 ?   -0.0   0.0       1.4   7.8e+02      20      34 ..     232     246 ..     223     257 .. 0.53
   3 ?   -0.1   0.0       1.5   8.3e+02       3      20 ..     260     277 ..     258     289 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0016
   DASH_Dam1  3 pafaeLaDsletLdknledLqqihe 27
                +++a+++D ++t+++n+++++++h 
  CDO72876.1 69 NEIASIQDDIRTFNDNVTRISDLHS 93
                57899******************96 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.4
   DASH_Dam1  20 edLqqihesLsdfNe 34 
                  d+++i+++L+++ +
  CDO72876.1 232 ADIKKIEKTLTELAQ 246
                 444444444444332 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.5
   DASH_Dam1   3 pafaeLaDsletLdknle 20 
                 +++  ++D +++++k +e
  CDO72876.1 260 EQITAINDTVQEVEKDVE 277
                 6788999***99999886 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0    0.0034       1.9      18      74 ..      63     117 ..      45     136 .. 0.78
   2 ?   -2.5   0.1       8.7   4.8e+03       6      20 ..     157     171 ..     147     200 .. 0.52
   3 ?   12.9   2.3   0.00015     0.081       5      59 ..     234     292 ..     230     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0034
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGG CS
  Laminin_II  18 qlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldk 74 
                  +a+  +++  +++++ ++n++v ++ ++ + + +a++d++++   +++++++L++ 
  CDO72876.1  63 SMAAFYNEIASIQDDIRTFNDNVTRISDLHSRSLNATDDVQNQ--RVNQQLEELVAD 117
                 4667789999******************************986..567777777765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.7
                 XXXXXXXXXXXXXXX CS
  Laminin_II   6 aeanetakevleqla 20 
                  ea +  + v++q  
  CDO72876.1 157 MEAIQNYQTVEQQYR 171
                 334444444443332 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXX CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvk....dankairdArr 59 
                 ++++++t++e  +  +++s  +e+  e++  in++v+e++++v+      +ka++ Ar 
  CDO72876.1 234 IKKIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVEtglnYTTKAVDHARA 292
                 78899*************************************99666345566666665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00036      0.19       8      28 ..     208     228 ..     207     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00036
       TPR_2   8 GlayyklgdyeeAleafekAl 28 
                 G+a++++++y eA+ a++++ 
  CDO72876.1 208 GQALMNSNRYGEARSAYREVQ 228
                 89****************986 PP

>> Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       9.5   5.1e+03      35      60 ..     111     135 ..      78     137 .. 0.47
   2 ?    0.2   0.1       2.1   1.1e+03      19      52 ..     154     176 ..     143     202 .. 0.57
   3 ?   12.2   0.3   0.00036       0.2      18      89 ..     248     319 ..     235     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 9.5
  Arc_PepC_II  35 ikrkfisvekeldeelrkelkkykkk 60 
                  +++ +++++ +l++ lr+++k+++k+
   CDO72876.1 111 LEELVADTS-ALSNVLRRRIKALQKQ 135
                  222222222.4455566666666665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2.1
  Arc_PepC_II  19 kkflflleefeekdgkikrkfisvekeldeelrk 52 
                  +kf+  +++++  +++ +           +++++
   CDO72876.1 154 QKFMEAIQNYQTVEQQYR-----------QKYKQ 176
                  344444444444333322...........22222 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00036
  Arc_PepC_II  18 lkkflflleefeekdgkikrkfisvekeldeelrkelkkykkkglieetvWvtygvPflipitaGfiialvl 89 
                   ++  +l+e+ +e+   i+ ++ +vek++++ l+ + k++ +++   ++ W+ + +  +i+i++ +i+a+v+
   CDO72876.1 248 FNDMSILVEQQDEQITAINDTVQEVEKDVETGLNYTTKAVDHARAARKKRWICFILCIVILIIIAIIVAVVV 319
                  45556777888887777*************99999999999999999**********************995 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.9   0.00074       0.4     252     371 ..     144     317 ..      53     323 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00074
       LMBR1 252 k............................................kvPeeiaeklks...........nenkteeslaklekqlikalqkrertekqwk 295
                                                               +Pee++  +                   ++   + ++  +++q+r+   k+ +
  CDO72876.1 144 IrnqqtglvkqkfmeaiqnyqtveqqyrqkykqrlerqykivkpdASPEEVKAVVDDdqggqifgqalM----NSNRYGEARSAYREVQERHADIKKIE 238
                 022222222222222222233222211111111111222222244566666666555887777644332....22333333444444555555555555 PP

       LMBR1 296 rlleka....lelediiknksskekefkssessrrgefakqgklkltptleyywaklllplvllilsiilvllsiiiils 371
                 + l++      ++  ++++++++ ++++++ ++ ++ + +    + t+ +    a + ++++++il+i+++++++ii+ +
  CDO72876.1 239 KTLTELaqlfNDMSILVEQQDEQITAINDTVQEVEKDVETGL-NYTTKAVDHARAARKKRWICFILCIVILIIIAIIVAV 317
                 555444111155567788888888899988887666665544.4678899999999999999******999999999974 PP

>> DUF4743  Domain of unknown function (DUF4743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3    0.0013      0.71      24      75 ..     144     198 ..     127     209 .. 0.73
   2 ?    0.6   0.1      0.97   5.3e+02      58      82 ..     221     245 ..     196     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                 ETTEEEEEEEHHHHHHHCT-TTTEEE-SS....EEEE-TT--SHHHHHHHHHHHH CS
     DUF4743  24 vegqqvGlirpdvaeklrkfpdvFevseke...aveLapslktyeeRtaaveevl 75 
                 + +qq Gl++++++e++++++ v +  +++   ++e + +  ++++  ++v+ v+
  CDO72876.1 144 IRNQQTGLVKQKFMEAIQNYQTVEQQYRQKykqRLERQYKIVKPDASPEEVKAVV 198
                 889*******************977766655333333333334555555565555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.97
                 -TT--SHHHHHHHHHHHHHHHHHTT CS
     DUF4743  58 apslktyeeRtaaveevleelreeg 82 
                 ++++++++eR a ++++ ++l e  
  CDO72876.1 221 RSAYREVQERHADIKKIEKTLTELA 245
                 5678999999999988887777654 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.37     2e+02      10      56 ..      71     117 ..      62     123 .. 0.61
   2 ?    0.5   0.2       1.4   7.6e+02      41      62 ..     154     175 ..     121     179 .. 0.79
   3 ?   11.9   2.2   0.00037       0.2       8      59 ..     225     278 ..     220     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.37
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleae 56 
                   ++ + ++I       + + +  +     +d+ + ++++++leel a+
    CDO72876.1  71 IASIQDDIRTFNDNVTRISDLHSRSLNATDDVQNQRVNQQLEELVAD 117
                   44555555555555555555445444446777777777777777655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.4
  ABC_tran_CTD  41 eklaelsaeleeleaeLeelye 62 
                   +k++e+ + ++++e++  ++y 
    CDO72876.1 154 QKFMEAIQNYQTVEQQYRQKYK 175
                   6788888999999999988886 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00037
  ABC_tran_CTD   8 releeleaeIeaLEeeiaeleaeladpely.sdp.eklaelsaeleeleaeLee 59 
                   re +e  a+I ++E+ ++el + ++d ++  +++ e++++++   +e+e++ e+
    CDO72876.1 225 REVQERHADIKKIEKTLTELAQLFNDMSILvEQQdEQITAINDTVQEVEKDVET 278
                   78888899********************99755469**************9997 PP

>> PBP_N  Penicillin-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4      0.42   2.3e+02      16      48 ..      11      43 ..       4      55 .. 0.72
   2 ?    8.4   0.1    0.0045       2.4      71     100 ..     288     314 ..     270     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.42
       PBP_N 16 sgsepakpgpasesdsvsqdpwapqgpdpfrls 48
                  s p +  p   s + + dp+a q  +p   s
  CDO72876.1 11 RDSYPMQSNPDYRSRARAADPYAQQDDNPSFES 43
                456788888888899999999999999993333 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0045
       PBP_N  71 khaaakkkarkgrwvwgtllvvvllavlsv 100
                  ha+    ark rw+ + l +v+l+ ++ +
  CDO72876.1 288 DHAR---AARKKRWICFILCIVILIIIAII 314
                 3444...46799********9999877654 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2      0.15        80      89     132 ..      49      90 ..      36     122 .. 0.75
   2 ?    9.9   1.4    0.0012      0.64     113     172 ..     255     314 ..     214     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.15
  EMP24_GP25L  89 kkvsfdievgseasdykdsakkekletleselkkleekldsikr 132
                   + + ++++g +a  ++ +a+ +++ ++++ +++++++++ i +
   CDO72876.1  49 TSSTTNLTTGVGA--DSMAAFYNEIASIQDDIRTFNDNVTRISD 90 
                  4555566666554..467899******************99986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0012
  EMP24_GP25L 113 letleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavl 172
                  +e+  +++  +++ +++++++++   +  ++  d++  + ++ +++ il +++l+++a++
   CDO72876.1 255 VEQQDEQITAINDTVQEVEKDVETGLNYTTKAVDHARAARKKRWICFILCIVILIIIAII 314
                  3444559999**********************************************9986 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.23   1.3e+02      16      40 ..      64      88 ..      54      93 .. 0.74
   2 ?   -1.5   0.1       6.2   3.4e+03      23      33 ..     104     114 ..      98     134 .. 0.66
   3 ?    2.0   0.0      0.52   2.9e+02      17      43 ..     221     247 ..     212     249 .. 0.78
   4 ?    4.9   3.6     0.063        34       3      38 ..     242     277 ..     234     281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.23
   FlaC_arch 16 letvkkeneelsksveelkenVkdl 40
                ++   +e+ ++++++ + ++nV ++
  CDO72876.1 64 MAAFYNEIASIQDDIRTFNDNVTRI 88
                5556677888888888888888765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6.2
   FlaC_arch  23 neelsksveel 33 
                 n+ +++++eel
  CDO72876.1 104 NQRVNQQLEEL 114
                 45555555544 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.52
   FlaC_arch  17 etvkkeneelsksveelkenVkdllsL 43 
                  ++ +e +e   ++++++++  +l +L
  CDO72876.1 221 RSAYREVQERHADIKKIEKTLTELAQL 247
                 566788899999999999999888766 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.063
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelkenVk 38 
                  el + ++++s+ +e   +++  ++++v+e++++V+
  CDO72876.1 242 TELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVE 277
                 466677788888888888888888888888888885 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.6    0.0033       1.8      71     145 ..      62     136 ..      43     183 .. 0.78
   2 ?    3.7   0.3     0.071        38      84     138 ..     221     280 ..     206     298 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0033
  Allexi_40kDa  71 vsllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetses 145
                    s+ +  ++++ ++d++rt+++++ +++++++++ + +++ +++++ ++le +  +  +l + l++ +++ +++ 
    CDO72876.1  62 DSMAAFYNEIASIQDDIRTFNDNVTRISDLHSRSLNATDDVQNQRVNQQLEELVADTSALSNVLRRRIKALQKQG 136
                   455566788999***************************************999888888888877666655544 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.071
  Allexi_40kDa  84 rdalrtltklldklksvekklelsaetasdskll.....kklesietsleelhakldels 138
                   r+a r++++   ++k++ek+l++ a+  +d ++l     +++++i+ +++e+ + +++  
    CDO72876.1 221 RSAYREVQERHADIKKIEKTLTELAQLFNDMSILveqqdEQITAINDTVQEVEKDVETGL 280
                   444444444444444444443333333222222200000345555555555555554433 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.2      0.73     4e+02      93     144 ..      73     125 ..      43     171 .. 0.61
   2 ?   -2.5   0.1       2.8   1.5e+03     264     288 ..     157     181 ..     141     187 .. 0.70
   3 ?   12.9   1.5   5.9e-05     0.032     117     210 ..     232     322 ..     209     324 .] 0.72

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.73
      Tweety  93 qltyslrkanhtlagikklvseteesleekleeeL.tkleeifakrtdlletl 144
                  +   +r  n  ++ i++l s + ++ +   ++++ ++lee++a    l ++l
  CDO72876.1  73 SIQDDIRTFNDNVTRISDLHSRSLNATDDVQNQRVnQQLEELVADTSALSNVL 125
                 44444455555555555554444333322222222123444444444433333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
      Tweety 264 sdilqyylkCsqsltnpFqqrLtes 288
                  + +q y + +q+ + +++qrL+  
  CDO72876.1 157 MEAIQNYQTVEQQYRQKYKQRLERQ 181
                 3566777788888888888888765 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 5.9e-05
      Tweety 117 esleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselpflkkkdvslt.elaeqvelvelyRWlaylllllldlviClvlllglark 210
                 +++ +k+e++Lt+l ++f+    l   +++  eq++++ ++++e++   +++++ t + +++     + RW+ ++l ++++++i +++ + + ++
  CDO72876.1 232 ADI-KKIEKTLTELAQLFNDMSIL---VEQQDEQITAINDTVQEVEKDVETGLNYTtKAVDHARAARKKRWICFILCIVILIIIAIIVAVVVLQN 322
                 444.46888899999988765544...445567777777777777755566666541455667778899***********999999998887665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   6.7      0.22   1.2e+02      30      92 ..      72     134 ..      48     179 .. 0.74
   2 ?   10.5   1.6   0.00085      0.46      16      75 ..     232     290 ..     228     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.22
  Baculo_PEP_C  30 vqilaqlatlldaietqLnalsedlksllaeldt.rldtlltnLtdalnalqdtlrneLtnlns 92 
                   ++i  ++ t  d++ t++++l ++  ++  ++++ r++++l++L +   al++ lr ++++l++
    CDO72876.1  72 ASIQDDIRTFNDNV-TRISDLHSRSLNATDDVQNqRVNQQLEELVADTSALSNVLRRRIKALQK 134
                   33444444444433.3355555554444555554588888888888888888888888888775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00085
  Baculo_PEP_C  16 ldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtda 75 
                    d+ ++ +++ + ++q+ ++++ l+++ ++q++a+++ ++++ ++++t l+ +++++++a
    CDO72876.1 232 ADIKKIEKTL-TELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVETGLNYTTKAVDHA 290
                   5566666666.6778999999999999999999999999999999999999999998876 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5       6.1   3.3e+03      53      53 ..      75      75 ..      12     125 .. 0.63
   2 ?   11.4   0.7   0.00054      0.29      40      91 ..     269     322 ..     220     324 .] 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.1
       Orf78 53 e 53
                +
  CDO72876.1 75 Q 75
                1 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00054
       Orf78  40 kksaaeknditekesn....aaekaqalnillisllavvcvlvllyviyYfvilre 91 
                  +++++++++  +         ++++a +  +i ++ ++++l+++ +i+  v+l++
  CDO72876.1 269 VQEVEKDVETGLN--YttkaVDHARAARKKRWICFILCIVILIIIAIIVAVVVLQN 322
                 2222222222222..12234445666777889999999999999999999998876 PP

>> UL45  UL45 protein, carbohydrate-binding C-type lectin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.3   1.2e+03       6      42 ..       9      52 ..       6      60 .. 0.51
   2 ?    9.1   1.3    0.0017      0.94      32      73 ..     284     320 ..     256     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.3
        UL45  6 ddsplepvkaelrfevra.......iledepsvlsstsssrtkr 42
                dd++  p++ ++   +ra        ++d+ps  s+t+  ++++
  CDO72876.1  9 DDRDSYPMQSNPDYRSRAraadpyaQQDDNPSFESATKDTTSST 52
                55566666666655555411111104556666666666555554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
        UL45  32 lsstsssrtkrkspaaalllilggialGvlltvfvivatlvf 73 
                 +++  ++r+ r  + +++++il+++   +l+ +++iva++v+
  CDO72876.1 284 TKAVDHARAAR--KKRWICFILCIV---ILIIIAIIVAVVVL 320
                 33334455555..788999999988...67888999999987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       0.9   4.9e+02      40      67 ..      97     124 ..      54     172 .. 0.64
   2 ?    9.2   1.0   0.00097      0.53     101     162 ..     256     317 ..     220     321 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.9
        MMPL  40 algsaaaeaavdelvdelkkdtkhvgev 67 
                  +++  +++ v+++++el +dt+++ +v
  CDO72876.1  97 NATDDVQNQRVNQQLEELVADTSALSNV 124
                 4444444455555555555555544443 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00097
        MMPL 101 teadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLli 162
                 +++de+++ai ++v+e + +  +  + t  a+  a  +   ++   ++ +v+l++i++i ++
  CDO72876.1 256 EQQDEQITAINDTVQEVEKDVETGLNYTTKAVDHARAARKKRWICFILCIVILIIIAIIVAV 317
                 5789**************44444444444444444433334444444444444444444333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.5   2.7e+02      85     108 ..      67      90 ..      58     104 .. 0.72
   2 ?    1.0   1.4      0.76   4.1e+02      44      74 ..     105     135 ..      94     180 .. 0.74
   3 ?    9.5   1.3    0.0017      0.95      55      98 ..     235     278 ..     220     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.5
     DUF1664  85 ikeevtevredlseigedvesvke 108
                   +e++++++d+++++++v+ +++
  CDO72876.1  67 FYNEIASIQDDIRTFNDNVTRISD 90 
                 456777777777777777776654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.76
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkk 74 
                 ++v +qle++ ++ +a  + L +ri+ ++k+
  CDO72876.1 105 QRVNQQLEELVADTSALSNVLRRRIKALQKQ 135
                 5689999999999999999999999999876 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0017
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                 +++++t  +L++  + +   +++q e +++i++ v+ev++d+++
  CDO72876.1 235 KKIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVET 278
                 46677777777777777777777777777777777777777764 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2       0.2   1.1e+02      78     116 ..      71     111 ..      59     133 .. 0.52
   2 ?    0.5   0.3       1.1   6.2e+02      92     115 ..     159     182 ..     140     195 .. 0.70
   3 ?    7.9   0.2    0.0055         3      59     112 ..     236     289 ..     221     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
        COG2  78 laaarkkvesvreklsereeeveskleeakeleekr..ell 116
                 +a+++++++ +++++ + +   +  l++  +++++r  + l
  CDO72876.1  71 IASIQDDIRTFNDNVTRISDLHSRSLNATDDVQNQRvnQQL 111
                 55555555555555555555555555555555555533111 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.1
        COG2  92 lsereeeveskleeakeleekrel 115
                   ++ ++ve++ +++ + + +r++
  CDO72876.1 159 AIQNYQTVEQQYRQKYKQRLERQY 182
                 334567788888887777777754 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0055
        COG2  59 slSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleek 112
                 ++ + L+ l +  + ++  +++  ++++++++ ++e e++ve  l+  +++ ++
  CDO72876.1 236 KIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVETGLNYTTKAVDH 289
                 556677888888888888888888888888888888888888888766655444 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.6      0.57   3.1e+02      26      87 ..      66     126 ..      41     181 .. 0.62
   2 ?   -0.4   0.3       1.6   8.8e+02      13      53 ..     152     193 ..     128     217 .. 0.61
   3 ?   10.8   2.3    0.0006      0.33      22      91 ..     215     281 ..     205     292 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.57
                 STTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHH CS
        PCRF  26 klskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelk 87 
                 ++ +e+a++++ ++++++  ++ +dl++ ++l ++d+  ++ ++++leel ++ ++l++ l+
  CDO72876.1  66 AFYNEIASIQDDIRTFNDNVTRISDLHS-RSLNATDDVQNQRVNQQLEELVADTSALSNVLR 126
                 3344444444444444444444444444.233223333333344555555555555544443 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.6
                 .-GGGTTTGGGSSSTTHHHHH.THHHHHHHHHHHHHTTTHHH CS
        PCRF  13 sdpevwedqekakklskelae.leeivealeeleealedlee 53 
                  +++++e  ++++++ +++++  ++ +e+  ++ +  ++ ee
  CDO72876.1 152 VKQKFMEAIQNYQTVEQQYRQkYKQRLERQYKIVKPDASPEE 193
                 445555555555555555543244444444444444444444 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0006
                 GGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-...-GGGTHHHHHHHHHH..HHHHHT- CS
        PCRF  22 ekakklskelaeleeivealeeleealedleeakelleedeela.elaeeeleelekeleeleeelkklLl 91 
                 +++ +  + ++e++e  ++++++e++l +l++   l+ +d ++  e ++e++++++++++e+e+++++ L 
  CDO72876.1 215 NRYGEARSAYREVQERHADIKKIEKTLTELAQ---LF-NDMSILvEQQDEQITAINDTVQEVEKDVETGLN 281
                 33444444444444444444444444444444...65.554433133344577777777777777777665 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   6.8      0.73     4e+02      19      52 ..     103     136 ..      85     181 .. 0.82
   2 ?    9.8   1.5    0.0011      0.59      83     145 ..     220     278 ..     212     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.73
  Lebercilin  19 elaelqskleelrkEnklLkrlqkrqekaLskye 52 
                 +++ ++++leel  +  +L ++ +r  kaL+k  
  CDO72876.1 103 QNQRVNQQLEELVADTSALSNVLRRRIKALQKQG 136
                 5667889999999999999999999999999854 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0011
  Lebercilin  83 erelekklkekeaellrlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLer 145
                  r++ ++++e+ a++++++++l++l +L +d +    e+  +++++++++++e e++++    
  CDO72876.1 220 ARSAYREVQERHADIKKIEKTLTELAQLFNDMSI-LVEQQDEQITAINDTVQEVEKDVE---T 278
                 5788899************************999.46778999******9999998875...3 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   4.4       0.7   3.8e+02      10      76 ..      70     137 ..      61     186 .. 0.43
   2 ?    9.3   0.7    0.0011      0.62       8      72 ..     221     288 ..     214     302 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.7
       TMPIT  10 efkeleetakeykqkleelsklqskcskeikk.qkkrlkelksslkklkksvkeeeeeeveelkeelk 76 
                 e+ ++++  ++++ ++ ++s l s+  ++++  q++r+++  ++l   ++++++  +++++ l+++  
  CDO72876.1  70 EIASIQDDIRTFNDNVTRISDLHSRSLNATDDvQNQRVNQQLEELVADTSALSNVLRRRIKALQKQGG 137
                 45555555555555555555555544444332134444444444444344444444444444444322 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0011
       TMPIT   8 ekefkeleeta...keykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelk 72 
                 ++ ++e++e++   k+++++l el++l +++s  +++q ++++++++++++++k+v++  + +++ ++
  CDO72876.1 221 RSAYREVQERHadiKKIEKTLTELAQLFNDMSILVEQQDEQITAINDTVQEVEKDVETGLNYTTKAVD 288
                 5667777777744467778999999999999999******************9998744444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3197  (0.178314); expected 358.6 (0.02)
Passed bias filter:                     1237  (0.0689944); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:01.16
# Mc/sec: 847.48
//
Query:       CDO72877.1  [L=76]
Description: hypothetical protein BN946_scf185002.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-11   42.6   7.7      5e-11   42.6   7.7    1.6  1  zf-AN1        AN1-like Zinc finger
  ------ inclusion threshold ------
       0.09   12.5   0.4       0.09   12.5   0.4    2.3  4  Rubredoxin_2  Rubredoxin metal binding domain
        0.4   10.9   9.5       0.55   10.5   8.6    1.7  1  IBR           IBR domain, a half RING-finger domain
       0.49   10.2   7.9       0.11   12.3   4.2    1.7  2  zf-RING_4     RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   7.7   1.1e-14     5e-11       4      39 ..      13      49 ..       7      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 1.1e-14
      zf-AN1  4 ksCkkkdflp.fkCryCgkvFClkHrlpedHdCkkla 39
                ++C++ ++   +kC++C+ +FC +Hr+pe H+C++l+
  CDO72877.1 13 TRCNQAVLRLvGKCPHCRLEFCGDHRMPEHHQCQNLE 49
                68*****7555***********************986 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   5.9e+03       5       9 ..       6      10 ..       5      12 .. 0.64
   2 ?   12.5   0.4     2e-05      0.09       5      21 ..      14      30 ..      13      30 .. 0.88
   3 ?   -2.1   0.3      0.75   3.4e+03       2       5 ..      44      47 ..      43      47 .. 0.61
   4 ?   -3.5   0.1         2     9e+03      20      21 ..      51      52 ..      49      54 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
  Rubredoxin_2  5 qCGfe 9 
                  +C f+
    CDO72877.1  6 RCEFQ 10
                  57666 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2e-05
  Rubredoxin_2  5 qCGfesakwfGrCpsCg 21
                  +C+    +++G+Cp+C+
    CDO72877.1 14 RCNQAVLRLVGKCPHCR 30
                  58888999********6 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.75
  Rubredoxin_2  2 vCsq 5 
                  +C++
    CDO72877.1 44 QCQN 47
                  6775 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 2
  Rubredoxin_2 20 Cg 21
                  C+
    CDO72877.1 51 CR 52
                  43 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.6   0.00012      0.55      35      60 ..      14      45 ..       2      51 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
         IBR 35 gcks......vtCskCgfefCfnCkkewHegl 60
                 c++       +C++C+ efC +++ + H+++
  CDO72877.1 14 RCNQavlrlvGKCPHCRLEFCGDHRMPEHHQC 45
                244455665456****************9976 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.2   2.5e-05      0.11      20      47 ..       7      33 ..       5      34 .. 0.87
   2 ?   -1.4   0.1      0.47   2.1e+03      42      45 ..      50      53 ..      35      57 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
   zf-RING_4 20 CgyqiClfCyhrileeeegrCPaCreeY 47
                C++q    C + +l +  g+CP Cr e+
  CDO72877.1  7 CEFQAETRCNQAVL-RLVGKCPHCRLEF 33
                *********77777.68********876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.47
   zf-RING_4 42 aCre 45
                +Cr+
  CDO72877.1 50 NCRQ 53
                4554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 505.67
//
Query:       CDO72878.1  [L=453]
Description: hypothetical protein BN946_scf185002.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-82  276.4   0.0    4.3e-82  276.2   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.2   0.0   2.4e-86   4.3e-82       2     362 ..      75     444 ..      74     445 .. 0.96

  Alignments for each domain:
  == domain 1  score: 276.2 bits;  conditional E-value: 2.4e-86
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHT..T CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllkln..p 92 
                    +++nLg+++y++d+ k ++lp+v+ka+   +++    +ey+pi+glpe+  a a++++  +s ++k++r ++v+++sG+ga+   + fl k+    
     CDO72878.1  75 NKVNLGVGAYRDDDDKpWVLPVVKKATEILLNDPTLDHEYLPITGLPEYTAAAARLVFgkDSAVIKEERVTSVQTISGTGANHLGALFLSKFYgwN 170
                    89**************889998888886689999999*********************999*****************************854225 PP

                    T-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2  93 gdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                    +++++v+dpt+ +++ il l g++v +yp+y++++ +l + a++e lk+ap++++   ++l++++hNPtG+++t+e++ +++d + +++++ f+D 
     CDO72878.1 171 EKRVYVSDPTWVNHHAILPLVGIPVSTYPYYDPQTIGLAFSAFLETLKTAPARSV---FLLHACAHNPTGVDPTREQWGQIADAMLEKGHFAFFDS 263
                    678****************************************************...************************************** PP

                    TTTTCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH. CS
  Aminotran_1_2 189 aYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs. 272
                    aY+gf++g+l  da+a+r ++ + + ll+++s++K+ Gl+GeRvG++ ++a       +++sql  l+r+ +s  +++++++v+ +l+ ++l ++ 
     CDO72878.1 264 AYQGFASGDLenDAWAVREFARRNVPLLVCQSFAKNAGLYGERVGALHVVApskdaaaRIKSQLSVLARAEISnpPAHGARLVSLILNSDELFEDw 359
                    *************************************************9999******************************************* PP

                    ..HHHHHHHHHHHHHHHHHHHHHHS.....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 273 ..eleemrqrlqkrrkelrdeLael.....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelve 361
                      ++++m+ r++++rkel+  L+e      +++++ +q+gmf++t++ ++     s++L+e+ ++y+t         ++Ri++Agl++ +++++++
     CDO72878.1 360 krDIKTMAGRIIAMRKELHRLLTEElktpgNWDHIVNQIGMFSFTGIGPA----QSQALVEKAHIYLTS--------NGRISMAGLNSHNIRYFAT 443
                    **********************999*************************....7888***********........9***************987 PP

                    H CS
  Aminotran_1_2 362 a 362
                     
     CDO72878.1 444 Q 444
                    6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3142.37
//
Query:       CDO72879.1  [L=1204]
Description: hypothetical protein BN946_scf185002.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-18   63.1  20.5     0.0004   20.4   0.1    8.8  8  HEAT      HEAT repeat
    4.1e-12   46.3  16.3    0.00023   21.5   0.0    6.3  6  HEAT_2    HEAT repeats
    7.7e-10   39.1  20.4     0.0016   18.9   3.5    6.1  6  HEAT_EZ   HEAT-like repeat
    0.00039   20.5   0.2       0.85    9.6   0.0    3.6  5  Cnd1      non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.032   1.4e+02       1      21 [.     324     344 ..     324     350 .. 0.86
   2 ?    4.2   0.0     0.014        63      10      30 ..     721     741 ..     716     742 .. 0.87
   3 !   20.4   0.1     9e-08    0.0004       1      29 [.     751     779 ..     751     781 .. 0.94
   4 !   15.2   0.0   4.1e-06     0.018       2      28 ..     791     817 ..     790     820 .. 0.91
   5 !    9.1   0.0   0.00039       1.7       2      30 ..     923     951 ..     922     952 .. 0.92
   6 ?    2.6   0.1     0.048   2.2e+02      17      30 ..    1018    1031 ..    1013    1031 .. 0.86
   7 !   13.3   0.4   1.7e-05     0.077       1      28 [.    1039    1066 ..    1039    1068 .. 0.93
   8 ?    2.2   0.1     0.062   2.8e+02       7      23 ..    1143    1160 ..    1140    1163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.032
                 HHHHHHHHHT-SSHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAa 21 
                 +lPll +l +D++  V ea a
  CDO72879.1 324 VLPLLNNLATDDDDAVKEALA 344
                 589988888*********987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
                 T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  10 sDpspeVReaAakaLgalaev 30 
                 +Dp   VR+ A  a+gala+v
  CDO72879.1 721 RDPIFWVRREASFAVGALAKV 741
                 577788*************98 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 9e-08
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llPl+ +l++Dp ++VR +++ aL a+++
  CDO72879.1 751 LLPLFESLCRDPTWHVRHSVLFALPAILS 779
                 89***********************9987 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 l+++l l +D+++ VR+a+++aLg+++
  CDO72879.1 791 LDVILPLSKDEEATVRSAVLEALGEVM 817
                 68899*9*****************986 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00039
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                  Pl l+l ++p+ ++R++ a +Lg++a++
  CDO72879.1 923 RPLYLTLAQSPAFKIRRTLAASLGEMAKI 951
                 69999*99*******************97 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.048
                  HHHHHHHHHHHHHC CS
        HEAT   17 ReaAakaLgalaev 30  
                  Re+AakaL+ l+ev
  CDO72879.1 1018 REMAAKALAGLVEV 1031
                  9*********9986 PP

  == domain 7  score: 13.3 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  ll +l+++l+D  + VReaA+ aL a++
  CDO72879.1 1039 LLRMLVSALEDRTAAVREAAVAALPAFV 1066
                  7899********************9987 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.062
                  HHH.T-SSHHHHHHHHHH CS
        HEAT    7 kll.sDpspeVReaAaka 23  
                  + l +D+s eVR+ A   
  CDO72879.1 1143 RHLaQDDSHEVRAFASSV 1160
                  4555*********99765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.015        69      33      53 ..     325     345 ..     310     351 .. 0.57
   2 !   18.9   0.1   3.4e-07    0.0015      16      88 .]     727     814 ..     709     814 .. 0.61
   3 !   21.5   0.0   5.2e-08   0.00023       4      59 ..     754     826 ..     751     855 .. 0.70
   4 !    8.2   0.1   0.00073       3.3      21      73 ..     911     967 ..     909     979 .. 0.80
   5 !   15.1   2.8   5.2e-06     0.023      13      74 ..    1014    1082 ..    1009    1089 .. 0.81
   6 ?   -0.1   0.0      0.27   1.2e+03      35      51 ..    1141    1157 ..    1132    1180 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.015
      HEAT_2  33 lpaLvellededpavRraaae 53 
                 lp+L +l++d+d av +a a 
  CDO72879.1 325 LPLLNNLATDDDDAVKEALAA 345
                 444444445555555555544 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.4e-07
      HEAT_2  16 vrraairaLg........rignpealpaLvellededpavRraaaeaLgai......gdpe...alpaLkellddddddvvReaAaeaLa 88 
                 vrr+a  a g        +  + ++lp++ +l++d+ ++vR+ +  aL ai      + ++   al++ + l   d+++ vR a++eaL+
  CDO72879.1 727 VRREASFAVGalakvvpvEVVTSSLLPLFESLCRDPTWHVRHSVLFALPAIlsrlapD-HRrtlALDVILPLS-KDEEATVRSAVLEALG 814
                 6676666666444444444444466777777777777777777777776554433321.11344777777755.4566777777777774 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 5.2e-08
      HEAT_2   4 LlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgai.........g 59 
                 L + l +dp + vr+ ++ aL         + + + al+ +++l +de++ vR a+ eaLg++         g
  CDO72879.1 754 LFESLCRDPTWHVRHSVLFALPailsrlapDHRRTLALDVILPLSKDEEATVRSAVLEALGEVmytfvddegG 826
                 5566669***************777644443344467************************985555544432 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00073
      HEAT_2  21 iraLgrignpealpaLvellededpavRraaaeaLgai....gdpealpaLkelldd 73 
                 + +Lgr +  e++p+ + l++++   +Rr+ a +Lg++    g++ a + L + +++
  CDO72879.1 911 ALTLGRDRWHELRPLYLTLAQSPAFKIRRTLAASLGEMakiiGEEHARADLMDVWRS 967
                 55677766678999999*******************774444788898888888876 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 5.2e-06
      HEAT_2   13 dpevrraairaLg......rignpealpaLvellededpavRraaaeaL.gaigdpealpaLkellddd 74  
                  ++  r +a++aL+        + + +l++Lv++led  +avR+aa+ aL + +++ ++ + L+++l+ d
  CDO72879.1 1014 SWREREMAAKALAglveveGVDGEVLLRMLVSALEDRTAAVREAAVAALpAFVREWKDRQPLLDALRAD 1082
                  78889999999997666655666777***********************44557777778888888776 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.27
      HEAT_2   35 aLvellededpavRraa 51  
                  + + l++d++ +vR+ a
  CDO72879.1 1141 LARHLAQDDSHEVRAFA 1157
                  44445555555555433 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00028       1.2      25      47 ..     320     342 ..     310     346 .. 0.88
   2 ?    3.1   0.0     0.032   1.4e+02      26      55 .]     435     468 ..     413     468 .. 0.88
   3 !    6.9   0.1    0.0021       9.4       3      52 ..     727     774 ..     726     777 .. 0.84
   4 !   12.4   0.2   3.9e-05      0.17       1      54 [.     764     815 ..     764     816 .. 0.82
   5 !   18.9   3.5   3.5e-07    0.0016       1      52 [.    1015    1062 ..    1015    1062 .. 0.97
   6 ?   -2.8   0.0       2.3     1e+04      37      48 ..    1146    1157 ..    1141    1159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00028
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaa 47 
                 +v+ +lp+L +l +dd+d+V++a
  CDO72879.1 320 AVDYVLPLLNNLATDDDDAVKEA 342
                 7999****************887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.032
     HEAT_EZ  26 vpeilpaLlalLnddsdeV....RaaAagaLgnl 55 
                 v++  p+L+ lL +++++V    R+a++  L++l
  CDO72879.1 435 VQAFTPLLGTLLLNPHALVsgpaRYAVVELLRRL 468
                 78899**************9999*****999987 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0021
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 vRr A  a+G+la + p  +    + +lp++ +l +d+  +VR  ++ aL
  CDO72879.1 727 VRREASFAVGALAKVVPVEVV--TSSLLPLFESLCRDPTWHVRHSVLFAL 774
                 9*********98866555555..89999999999988888****999998 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 3.9e-05
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 w vR++++ aL + l   +p++ ++l  +++ +L    +d++++VR a++ aLg 
  CDO72879.1 764 WHVRHSVLFALPAiLSRLAPDHRRTLALDVILPLS---KDEEATVRSAVLEALGE 815
                 899999*****335777779999977777777777...88888**********96 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 3.5e-07
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  wr+R+ Aa aL+ l ++e+ + +    ++l+ L+++L+d  ++VR+aA+ aL
  CDO72879.1 1015 WREREMAAKALAGLVEVEGVDGE----VLLRMLVSALEDRTAAVREAAVAAL 1062
                  9**********88**********....**********************998 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 2.3
     HEAT_EZ   37 LnddsdeVRaaA 48  
                   +dds eVRa A
  CDO72879.1 1146 AQDDSHEVRAFA 1157
                  488999**9865 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.42   1.9e+03      16      40 ..     318     342 ..     314     348 .. 0.86
   2 ?   -2.4   0.0      0.95   4.3e+03      53     104 ..     432     485 ..     430     499 .. 0.69
   3 !    9.6   0.0   0.00019      0.85      22     110 ..     712     802 ..     705     824 .. 0.77
   4 !    5.9   0.0    0.0027        12      38      84 ..    1018    1064 ..    1017    1106 .. 0.85
   5 ?   -3.9   0.0       2.7   1.2e+04      28      45 ..    1144    1161 ..    1139    1162 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.42
        Cnd1  16 pnlveylvepLrkrLkDedpyVRkt 40 
                 ++ v+y+++ L++  +D+d  V++ 
  CDO72879.1 318 TEAVDYVLPLLNNLATDDDDAVKEA 342
                 5789******************976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.95
        Cnd1  53 mvkekgflselaklleDenprVvanalaalteisek..senaiynllpdiiskl 104
                 ++ ++ f   l +ll ++++ V+  a++a  e++++    +++ +  + ++s+ 
  CDO72879.1 432 VISVQAFTPLLGTLLLNPHALVSGPARYAVVELLRRlrRADQAEEEERASMSSS 485
                 567788888999999999999999999999999998654444444444444444 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00019
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalne 110
                 +v ++++  +D+   VR+ a ++v  L  + +  v  + +l  +++l +D+   V+ ++l+al  i+++ +++   +l  d+i  ls++ +e
  CDO72879.1 712 FVAEVERVGRDPIFWVRREASFAVGALakVVPVEVVTSSLLPLFESLCRDPTWHVRHSVLFALPAILSRlAPDHRRTLALDVILPLSKD-EE 802
                 56667777788888999999999999977667777777799999999999999999999999999999998888889999999988854.33 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0027
        Cnd1   38 RktaaivvakLilndmvkekgflselaklleDenprVvanalaalte 84  
                  R+ aa ++a L++ + v  + +l +l ++leD  + V++ a+aal  
  CDO72879.1 1018 REMAAKALAGLVEVEGVDGEVLLRMLVSALEDRTAAVREAAVAALPA 1064
                  77888899999999999999999999999999999999999999865 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 2.7
        Cnd1   28 krLkDedpyVRktaaivv 45  
                  +  +D++  VR  a  vv
  CDO72879.1 1144 HLAQDDSHEVRAFASSVV 1161
                  334566666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 7742.63
//
Query:       CDO72880.1  [L=111]
Description: hypothetical protein BN946_scf185002.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 813.42
//
Query:       CDO72881.1  [L=1269]
Description: hypothetical protein BN946_scf185002.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-38  132.7   0.1    1.8e-38  132.1   0.1    1.3  1  Ist1        Regulator of Vps4 activity in the MVB pathway
    6.4e-09   35.8   1.1    4.8e-08   32.9   0.0    2.3  3  RabGAP-TBC  Rab-GTPase-TBC domain
     0.0024   18.3   0.1     0.0073   16.8   0.0    1.8  2  DUF1697     Protein of unknown function (DUF1697)


Domain annotation for each model (and alignments):
>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.1     3e-42   1.8e-38       1     163 [.      11     172 ..      11     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 3e-42
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--SSSSSHHHHHHHHHHHHHH- CS
        Ist1   1 KtqlklaiqrlkllqkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqkeldeelkEAvssliyAaprv 99 
                 K+ l+l+ qrl  lq++ e++a++++rdia+lL++g+   Ar+++++  redi  +ll++le+++ ++l +l+ le+++  ++ + EA+ss+iyA + v
  CDO72881.1  11 KALLRLTAQRLGQLQDRLESQAQITQRDIATLLQQGNIALARAKAQKQTREDIKSDLLQTLEMHVGVILGHLNELERSDMPSPIVTEAASSIIYAGHTV 109
                 789************************************************************************************************ PP

                 TTTTTHHHHHHHHHTTS-HHHHHHHHTT-T.T--HHHHHHHS-----HHHHHHHHHHHHHHHT- CS
        Ist1 100 selkELkelrdllaekyGkefakaavenkdngVnekvvkklsvktpskelvekylkeIAkeynv 163
                  e k+L+++r+ l++    ef+++aven+d +V++kv++ +   +p+++  + yl +IA++ynv
  CDO72881.1 110 -ESKDLNQVREFLMQTLSPEFTRSAVENRDGYVSPKVLRAVAAPPPTATELDMYLYKIAQTYNV 172
                 .**************************************************************9 PP

>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       1.4   8.6e+03      39      59 ..      52      72 ..      34      75 .. 0.79
   2 !   32.9   0.0   8.1e-12   4.8e-08      71     195 ..     397     528 ..     382     557 .. 0.74
   3 ?    0.9   0.1     0.049   2.9e+02       2      45 ..     641     677 ..     640     699 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.4
  RabGAP-TBC 39 ekseeskelsqIkkDvprtfp 59
                + ++++++ ++Ik D+  t+ 
  CDO72881.1 52 RAKAQKQTREDIKSDLLQTLE 72
                556778889999999999876 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 8.1e-12
  RabGAP-TBC  71 nqLeriLkaysiynpevgYcqGmndivaplllvsldeee..........aFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkee 159
                 ++L r+L++ s  np+ +  + +  ++ p+++ + +e +          aFw+f s++    + +l  ++ +g    ++ l e l+  d +l++ l ++
  CDO72881.1 397 SALLRLLYIHSCLNPA-NSSPQIASLLVPIYAAFVEEVDevdlahieadAFWVFESMI--GEFAELEDEQ-NG-AVWVQKLSERLRWADAELADDLSTK 490
                 6788888888888887.44555666666666555555556668888888*********..7777776664.44.4567889****************** PP

  RabGAP-TBC 160 gldlel..faikwfltlflrefpletvlrlwDlllege 195
                 gld+ l  ++++w++ l+++++pl  vl +wD l+ ++
  CDO72881.1 491 GLDPGLphYSFRWLIPLLTHTLPLPAVLMVWDALYSQP 528
                 ****9999************************666333 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.049
  RabGAP-TBC   2 elRgevWklllgyep..evkrlkksekkqeksekeksklekseesk 45 
                 +lR +vWk +++ e+  e         ++++ e+e+s++e++e ++
  CDO72881.1 641 RLRDTVWKGFSRLEShpE---------EDDDTEEESSEEEEEEGNE 677
                 69*********9976431.........2222222222222222222 PP

>> DUF1697  Protein of unknown function (DUF1697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-06    0.0073      33      90 ..      36      93 ..      24     129 .. 0.84
   2 ?   -4.0   0.0         3   1.8e+04      84     117 ..    1071    1106 ..    1067    1112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
     DUF1697 33 fedVkTyiqSGNvvfeseedaaeleakiekaleeefgfevpvlvrtaeeleaivaanP 90
                 +d++T++q GN+ +   + +++ +++i++ l ++++++v v++   +ele+    +P
  CDO72881.1 36 QRDIATLLQQGNIALARAKAQKQTREDIKSDLLQTLEMHVGVILGHLNELERSDMPSP 93
                5799*****************************************9999998655555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
     DUF1697   84 aivaanPfeee..eeeekklyviflkeepsaealee 117 
                  ++++++P + +  ++ +   +v+f + +ps+ +l +
  CDO72881.1 1071 DVLSKQPVSPApqDSVPLDDDVTFASPAPSEGKLTR 1106
                  667777777776668888999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 7718.57
//
Query:       CDO72882.1  [L=622]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-13   48.2   0.0    2.2e-12   47.0   0.0    1.5  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.2e-16   2.2e-12      22     280 ..     167     438 ..     153     439 .. 0.73

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.2e-16
                 SHHHHHHHHHHHT-SEEEEEEEC....TGGTTSSTTT.......GCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHH......... CS
   Cellulase  22 ttkalidevkdagfntvRlpvsw....gelvenapdy.......kvdenslerveevvkyakenglyvildiHseegwltkadgnssedt......... 100
                  +++ +d ++  g+ntvRlp+++     +++e    +       +v +n+ +rv  +++ a ++g+ v++d+H  +g  ++++++s +++         
  CDO72882.1 167 INASDFDYLAGIGINTVRLPIGYwslgPTYCE----GtpfepvaEVYQNAWSRVVRAINMAGDAGVGVLVDLHGAPGS-QNGQPHSGISDgevnlfdnd 260
                 677888999999**********5466655552....123346668899**************************9555.44444444444444555322 PP

                 .HHHHHHH....HHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS....SEEEEECHHHHTBHHHHHCTSGSSS CS
   Cellulase 101 .aeeffkk....lwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn....rliivegnswsgnldgavlndPnds 190
                        +    ++t +  ++ +  +vv++ ++NEP  +           d + a++ +ai + R+++p      l i +  + +   d  v+n     
  CDO72882.1 261 wYI----NktmsVLTFLTRELINATNVVGIQILNEPSNV-----------DSLPAFYSQAISTMRQADPLakafPLYIHDAFDLAHYSDF-VANR---- 339
                 322....235559*************************4...........5589***************888866666667667777777.4443.... PP

                 STTEEEEEEEET...TTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTS.EEEEEEEESSTTSSH......HHHHHHHHH......HHHHHHTTTEEE CS
   Cellulase 191 qdnliysvHfYg...psdfaqtefgkdltdktnlaqrledaakylvekgi.pviigEfGgsnadgd......lakeeaekw......ldylkekgiswi 273
                 +d ++ + H+Y    p d  ++++    + +++ ++ ++da + +  +    ++igEf    +d++      ++ ++          +++ ++  ++w+
  CDO72882.1 340 SDFVVLDHHSYFvftPGDVVEPAA----QHTKDVQGPISDALAAAAARQRgNLVIGEFSCALTDESlsgeadPDAAR---RnfcqgqMETYRNLTAGWA 431
                 69*********6222555555555....556666777777766666666669*******998888887765522222...13346689999******** PP

                 EEEESSS CS
   Cellulase 274 yWslnpk 280
                 +W+++++
  CDO72882.1 432 FWAYDKE 438
                 **99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4211.24
//
Query:       CDO72883.1  [L=573]
Description: hypothetical protein BN946_scf185002.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-36  126.1   2.3    4.8e-35  120.9   2.3    2.3  1  GTP_EFTU   Elongation factor Tu GTP binding domain
    1.4e-30  105.5   1.1    3.7e-30  104.1   1.1    1.7  1  IF-2       Translation-initiation factor 2
    5.9e-08   32.8   0.3    2.5e-07   30.8   0.1    2.2  2  MMR_HSR1   50S ribosome-binding GTPase
    0.00032   20.5   0.5       0.14   11.9   0.1    2.4  2  PduV-EutP  Ethanolamine utilisation - propanediol utilisation
    0.00042   19.4   1.9    0.00072   18.6   0.3    2.0  2  MeaB       Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0032   17.0   0.0     0.0093   15.4   0.0    1.8  1  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.014   15.0   0.8      0.082   12.4   0.8    2.1  1  FeoB_N     Ferrous iron transport protein B
      0.018   14.5   0.0      0.043   13.2   0.0    1.7  1  SRPRB      Signal recognition particle receptor beta subunit
      0.053   13.7   0.0      0.089   13.0   0.0    1.4  1  Roc        Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   2.3   2.4e-38   4.8e-35       6     190 ..      51     215 ..      47     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 2.4e-38
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE......TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEE CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle......ketkkylinliDtPGHvdFskevirglrvlDgav 98 
                 ++i+ghvDhGKtTL+d+L  ++ a                  + ++ giT ++ a s+       +++ +++i+++DtPGH+ Fs    rg++v+D++v
  CDO72883.1  51 VTIMGHVDHGKTTLLDTLRSTSVA------------------KGEAGGITQHIGAFSVPvpagssSSEPTRTITFLDTPGHAAFSAMRARGASVTDVVV 131
                 78****************944433..................235789**********9999986699******************************* PP

                 EEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU  99 lvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 lvv+a++G++pqt+ev++l+++ +v ++v+iNK+D+++ +++++ +++  +       ++  ++ g+  vpvv++S+l+g+g+++l+e++  
  CDO72883.1 132 LVVAADDGIMPQTREVIELVKNSNVGLVVAINKVDKPGVDISKVENALLAEG------IQLEAFGGD--VPVVHVSGLTGQGLDQLVETISA 215
                 *********************************************9999887......999999995..*******************9975 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   1.1   1.9e-33   3.7e-30       9     105 .]     363     459 ..     355     459 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.9e-33
                 CSCS.SCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHSTEEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHHHHHH CS
        IF-2   9 keeg.kelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasnaiiigFnvkvskkakklaekegvkirlynvIYkliddvk 105
                 +  g kel++iik+Dv+G++eA+k ++++++++  +vkv+++gvG++tesDv  a+++ ++ii+Fnvkv ++++++a++++v i +++vIYkliddvk
  CDO72883.1 363 E-AGpKELRLIIKGDVSGTVEAVKGSVTDIGNDVARVKVVSTGVGEVTESDVLRAKTAGGVIIAFNVKVPRSVENEAQSQHVPILTSSVIYKLIDDVK 459
                 3.336*************************99****************************************************************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   1.3e-10   2.5e-07       2     114 .]      51     164 ..      50     164 .. 0.80
   2 ?   -2.5   0.0       2.6   5.3e+03      22      53 ..     436     465 ..     430     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.3e-10
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE........ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk........lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkp 92 
                 v i+G+   GK+tL+ +l  + +  ++  g T++i  + v         +  + i+++DtpG         +  +a  a   +d+++lvv a  +++ p
  CDO72883.1  51 VTIMGHVDHGKTTLLDTLRSTSVAKGEAGGITQHIGAFSVPvpagssssEPTRTITFLDTPG-HA----AFSAMRARGASV-TDVVVLVVAAD-DGIMP 142
                 789****************999999*************9986666554322467********.32....333444444333.69*99999877.7899* PP

                 HHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  93 ldeeleelleeakkplilvlnk 114
                 + +e+ el ++++  l++++nk
  CDO72883.1 143 QTREVIELVKNSNVGLVVAINK 164
                 *******998888888888887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
                 STEEESSSTTSSSSEEEEEEEETTEEEEEEEC CS
    MMR_HSR1  22 ekaivsdkpgtTrdinegrvklkgkeielvDt 53 
                 ++a+ ++ p  T  ++++ ++  + + +++D+
  CDO72883.1 436 NEAQSQHVPILTSSVIYKLID--DVKARVIDL 465
                 567788888888888888777..667777775 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0037       7.4       4      25 ..      51      72 ..      49      84 .. 0.88
   2 !   11.9   0.1   6.8e-05      0.14      40     141 ..     107     213 ..     102     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0037
   PduV-EutP  4 illiGkvgsGKttLtqalkgee 25
                + ++G+v+ GKttL  +l+  +
  CDO72883.1 51 VTIMGHVDHGKTTLLDTLRSTS 72
                678************9998765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.8e-05
   PduV-EutP  40 viDtPGeylenrklysali.vtsaeadvialvqdateeesvfppgfasvfnkeviGiitkidlaede.enieaveelLksaGae........kifevsa 128
                 ++DtPG         sa++   +  +dv++lv++a++     + ++ ++++   +G++  i+++++   +i++ve+ L + G++         + +vs 
  CDO72883.1 107 FLDTPGHA-----AFSAMRaRGASVTDVVVLVVAADDGIMPQTREVIELVKNSNVGLVVAINKVDKPgVDISKVENALLAEGIQleafggdvPVVHVSG 200
                 56777743.....2334440445567*******************************999999866525899999*99999997433333223578999 PP

   PduV-EutP 129 vekegieellkyl 141
                 ++ +g+++l++ +
  CDO72883.1 201 LTGQGLDQLVETI 213
                 9999999998877 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.35   7.1e+02      30      59 ..      49      78 ..      44      85 .. 0.77
   2 !   18.6   0.3   3.6e-07   0.00072     146     232 ..     128     220 ..     114     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.35
                EEEEEEE-TTSSHHHHHHHHHHHHHCTT-- CS
        MeaB 30 qvvGltGvPGaGkstlvealglelrrrGkr 59
                 vv + G    Gk tl++ l  + +++G+ 
  CDO72883.1 49 PVVTIMGHVDHGKTTLLDTLRSTSVAKGEA 78
                577888888889999999998888888765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.6e-07
                 EEEEEESSTTTTTTT--CCCHHH......-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHH CS
        MeaB 146 fvvlllpeaGDelqgikkGilei......aDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevl 232
                  vv+l+ +a D +    + ++e+      + ++++nk Dk++++ ++ e     e  + +  +   +v+++s+++g+G+d+lv++i+  +e+ 
  CDO72883.1 128 DVVVLVVAADDGIMPQTREVIELvknsnvGLVVAINKVDKPGVDISKVENALLAEGIQLEAFGGDVPVVHVSGLTGQGLDQLVETISAVAEMQ 220
                 3556666677778888888887522222266999**********9998887777777777889999********************9887765 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.7e-06    0.0093      19     172 ..      53     214 ..      47     217 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.7e-06
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEE........TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveelei........knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLka 106
                 ++G    GKtT+l  l++ ++++      T++    ++ +         + ++t+ D  G+     +  +  + td+v+ vv  ad   + ++ +e+ +
  CDO72883.1  53 IMGHVDHGKTTLLDTLRSTSVAKgeaGGITQHIGAFSVPVpagssssePTRTITFLDTPGHAAFSAMRARGASVTDVVVLVVA-ADDGIMPQT-REVIE 149
                 56666679999999999888887544223444444444445566665566789999999999999998888888898888885.454555554.55555 PP

                 HCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS...SSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 107 lleeeelkevallvlaNKqDlpealseeelrellgleelk...gkrkleiqkcsavkgeglkeglewls 172
                 l+   ++++v l+v  NK D p+ ++ ++++++l  e ++      ++ ++++s ++g+gl++ +e +s
  CDO72883.1 150 LV---KNSNVGLVVAINKVDKPG-VDISKVENALLAEGIQleaFGGDVPVVHVSGLTGQGLDQLVETIS 214
                 55...567899*********997.5667777777777766545457899**************999887 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   4.1e-05     0.082       3     156 .]      51     213 ..      49     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.1e-05
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE........TTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEG..GGH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklkl........kgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvda..tnl 91 
                 v+++G  + Gkttl+++l  ++   g   G+t      ++ +         +++++++D PG  ++sa+      ++        dvvv vv a    +
  CDO72883.1  51 VTIMGHVDHGKTTLLDTLRSTSVAKGEAGGITQHIGAFSVPVpagssssePTRTITFLDTPGHAAFSAMRARGASVT--------DVVVLVVAAddGIM 141
                 6789999999999999998887777777777744333322223333332244899999****999988765554444........44444443300444 PP

                 HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH.......TS-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N  92 ernLyLtlqllelgvpvvlalnmideaekkgieidlkkLsekL.......gvpvvktsakkkegieellkai 156
                  ++  ++  + + +v +v+a+n++d+   +  +++++ L+e +       +vpvv++s+ +++g+++l+++i
  CDO72883.1 142 PQTREVIELVKNSNVGLVVAINKVDKPGVDISKVENALLAEGIqleafggDVPVVHVSGLTGQGLDQLVETI 213
                 44445555556678999***********9999***99999876334444349****************9976 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05     0.043       4      65 ..      49     119 ..      46     169 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 -EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EE.ETTG..........GGTT-SEEEETT-GCCSHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSq.essa.alkv.......ksekgskltliDfPGheklrqk 65 
                 p v ++G  d GKT+l+  L + sv k  +    +++ a +v       +se   ++t++D PGh  +   
  CDO72883.1  49 PVVTIMGHVDHGKTTLLDTLRSTSVAKGEAGGiTQHIgAFSVpvpagssSSEPTRTITFLDTPGHAAFSAM 119
                 6789****************9997777665432222212222446666578888999********988654 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.5e-05     0.089       2     119 ..      51     166 ..      50     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlk 100
                 v ++G    GKt+ll+ + + ++ + e   i   +   +v    g ++++   + ++ + Dt G+  f++++    +  ++++lv+ +  ++ + +  +
  CDO72883.1  51 VTIMGHVDHGKTTLLDTLRSTSVAKGEAGGITQHIGAFSVPVPAGSSSSE--PTRTITFLDTPGHAAFSAMRARGASVTDVVVLVVAA--DDGIMPQTR 145
                 578999*****************999887666666666665455644444..4568899*************9999999999888865..555666677 PP

                 HHHHHCSSS-E..EEEEE-TT CS
         Roc 101 elkkvagkspv..ilvgnkiD 119
                 e+ + +++s+v  ++ +nk+D
  CDO72883.1 146 EVIELVKNSNVglVVAINKVD 166
                 777777776653255569999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4074.82
//
Query:       CDO72884.1  [L=361]
Description: hypothetical protein BN946_scf185002.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-47  159.2  23.1    2.3e-27   95.5   5.0    3.5  3  CHORD     CHORD
    1.6e-14   54.6   0.0      3e-14   53.8   0.0    1.5  1  CS        CS domain
  ------ inclusion threshold ------
       0.21   11.5   6.4        1.3    9.0   0.6    2.4  2  Rieske    Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> CHORD  CHORD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   5.0   3.8e-31   2.3e-27       2      63 .]       3      66 ..       2      66 .. 0.98
   2 !   32.6   2.6   1.7e-11     1e-07       2      38 ..     135     176 ..     134     183 .. 0.87
   3 !   40.6   2.2   5.4e-14   3.2e-10      30      63 .]     187     220 ..     178     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 3.8e-31
                E--SBTT--EE-STT--TT-.EEEB---EEEETTEEEETTT...TEEESSHHHHTT----EEE-- CS
       CHORD  2 kCknkGCgkkfeeeeneeeaeCtyHpgapvfheglkgWsCC...kkkvldFdeFlkiegCttgkH 63
                +C++kGCg++f++e+n +++ Ct+Hpgap+fheglk+WsCC   +k vldFdeF+ki+gCt+g+H
  CDO72884.1  3 RCTHKGCGQEFDPENNGPDS-CTFHPGAPIFHEGLKSWSCCsdvNKPVLDFDEFMKIQGCTKGQH 66
                6******************7.*********************999*******************9 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 1.7e-11
                 E--SBTT--EE-STT--.....TT-.EEEB---EEEETTEEE CS
       CHORD   2 kCknkGCgkkfeeeene.....eeaeCtyHpgapvfheglkg 38 
                  C+++GC+  +e++e +     ++aeCtyHp++p+fheg+k 
  CDO72884.1 135 VCRHNGCNVAYESDELHrkeggAAAECTYHPKPPIFHEGSKV 176
                 7**********988877667776778*************995 PP

  == domain 3  score: 40.6 bits;  conditional E-value: 5.4e-14
                 EEEETTEEEETTTTEEESSHHHHTT----EEE-- CS
       CHORD  30 pvfheglkgWsCCkkkvldFdeFlkiegCttgkH 63 
                 +++  ++kg+ CCk++vl+F+eFlkiegC++g+H
  CDO72884.1 187 AIHAHTSKGYLCCKRRVLEFEEFLKIEGCKKGRH 220
                 578889***************************9 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0     5e-18     3e-14       1      76 []     238     314 ..     238     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 5e-18
                 SSCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.TSCEEEEECEBSS-BETTTEEEEEETTEEEEEEEB CS
          CS   1 vkydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki.gkeklliegeLfgpIdpeesswtieskkveitLkK 76 
                 +++d+yQt++eV  ++++k+++  ++ +k+e ++ +l + + gk+++++  +L+gpI+peess+++ ++kve++LkK
  CDO72884.1 238 CRIDHYQTPTEVHASVFAKQADPGTSTIKIEENQVHLDLYLpGKKRFCKTLNLWGPINPEESSYKFYGTKVELKLKK 314
                 799******************8888888888444445555588899999999************************9 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.7    0.0043        25      42      67 ..       3      27 ..       2      29 .. 0.80
   2 ?    9.0   0.6   0.00023       1.3      41      66 ..     134     164 ..     132     167 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0043
                C-TTTT-BCGG.SEEETT.EEE-TTT- CS
      Rieske 42 vCtHrgaplse.gkidekgvleCpcHg 67
                +CtH+g+  +e +   ++g  +C +H 
  CDO72884.1  3 RCTHKGCG-QEfDPE-NNGPDSCTFHP 27
                7*******.675666.77799999995 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00023
                 SC-TTTT-BC....GG.SEEETT.EEE-TTT CS
      Rieske  41 dvCtHrgapl....se.gkidekgvleCpcH 66 
                  vC+H g+++    +e  + +++ + eC +H
  CDO72884.1 134 TVCRHNGCNVayesDElHRKEGGAAAECTYH 164
                 68********7754222333467799***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2590.75
//
Query:       CDO72885.1  [L=309]
Description: hypothetical protein BN946_scf185002.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-05   22.8   0.0      0.036   14.0   0.0    2.5  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00051       9.1       8      35 ..      34      61 ..      28     101 .. 0.83
   2 !   14.0   0.0     2e-06     0.036       8      66 ..     200     257 ..     194     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00051
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  8 ellaGglagavatlvttPldvvKtrlqt 35
                  ++Gg+ag +++++++P + ++  l  
  CDO72885.1 34 AAISGGVAGGAQAILAAPAENMRFALEG 61
                579****************988877755 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGT CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyr 66 
                  +  G++ag++  +v+ P d ++  + +++ s + ++++ i +++++ ++++G++++++
  CDO72885.1 200 LVTGGAIAGLAYEVVCRPWDAARKAVHIDRLSPSGAQHS-IPKIVSTKIRDDGMLSFFK 257
                 567799**************************9998766.9****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2130.35
//
Query:       CDO72886.1  [L=545]
Description: hypothetical protein BN946_scf185002.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-16   60.8   0.0    2.4e-16   60.1   0.0    1.4  1  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.016   15.9   2.2       0.04   14.6   2.2    1.7  1  RecQ_Zn_bind    RecQ zinc-binding
       0.13   12.1   0.0       0.27   11.0   0.0    1.5  1  DEAD            DEAD/DEAH box helicase
       0.43   11.1   2.2        3.7    8.1   2.6    2.3  2  Enterotoxin_ST  Heat-stable enterotoxin ST


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   5.3e-20   2.4e-16       9     110 ..     109     214 ..      95     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 5.3e-20
                 HHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   9 llkleeeggkilifvntidrlek.vklllekk....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                    l ++ +k+lifvnt+d+  +  ++++++        v ++h+   + ++ + ++qf +g++++L+at  +++G dip+++ V++++ p ++t  +q
  CDO72886.1 109 A-ALASDLKKTLIFVNTRDETMHvWRYICQRIppylRDAVGYMHSLKAAPSQGDLFNQFVAGTVRYLVATESIGMGADIPDIERVVHVGTPPSLTVWVQ 206
                 3.4778889**********5544589997777888889999********************************************************** PP

                 HHTTSSST CS
  Helicase_C 103 riGRtgRa 110
                 r+GR+gRa
  CDO72886.1 207 RAGRAGRA 214
                 *******8 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.2     9e-06      0.04      18      65 ..     249     300 ..     227     301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9e-06
  RecQ_Zn_bind  18 ekekeaelekleamlaycentteCrrkllleyFgeeaaee......eCgnCDnC 65 
                   e+ +++ ++++e+ l+   + ++Crr++  eyF+    e+      +C  CD C
    CDO72886.1 249 EEVEKGYRKNIETHLRNLVQAKDCRRRVCDEYFNNPPRESdavlpeHC--CDLC 300
                   55666666777776665557778**********96433336666668*..**** PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.27     125     172 ..      10      57 ..       4      61 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
                 EEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 125 lVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                  V+DEa++++ +  +f++ + +++ +l++   +g     +++lSATl+ + 
  CDO72886.1  10 WVIDEAHCISMWggEFRKSYGKLV-TLRTYAPRGV--APLLLLSATLSqRP 57 
                 69**********888888888854.4544555544..45********9665 PP

>> Enterotoxin_ST  Heat-stable enterotoxin ST
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.87   3.9e+03      28      43 ..     121     136 ..     108     137 .. 0.76
   2 ?    8.1   2.6   0.00083       3.7      20      50 ..     272     304 ..     266     307 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.87
  Enterotoxin_ST  28 qkknseeeendwdyCC 43 
                       ++ +e++  w y C
      CDO72886.1 121 FVNTRDETMHVWRYIC 136
                     55677799******99 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00083
  Enterotoxin_ST  20 vnkkkCdtqkknseeeendw..dyCCelCCNPA 50 
                       ++ Cd   +n+  e++    ++CC+lC N A
      CDO72886.1 272 CRRRVCDEYFNNPPRESDAVlpEHCCDLCTNRA 304
                     567789988888754444333479*******77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3520.07
//
Query:       CDO72887.1  [L=423]
Description: hypothetical protein BN946_scf185002.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3012.93
//
Query:       CDO72888.1  [L=136]
Description: hypothetical protein BN946_scf185002.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1015.53
//
Query:       CDO72889.1  [L=372]
Description: hypothetical protein BN946_scf185002.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-36  124.3  17.6    5.2e-12   46.1   0.2    8.4  8  WD40           WD domain, G-beta repeat
    5.6e-10   39.4   0.1     0.0022   18.3   0.1    5.2  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    2.3e-05   23.3   2.4      0.015   14.1   0.0    4.2  6  Nucleoporin_N  Nup133 N terminal like
    4.4e-05   22.3   1.2        3.9    6.0   0.1    4.1  4  Nup160         Nucleoporin Nup120/160
    7.5e-05   22.6   0.1        0.2   11.3   0.0    2.5  2  Hira           TUP1-like enhancer of split
    0.00054   19.0   0.1        2.7    6.9   0.0    3.5  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0085   15.1   0.1      0.027   13.4   0.1    1.8  1  PALB2_WD40     Partner and localizer of BRCA2 WD40 domain
  ------ inclusion threshold ------
       0.21    9.9   0.0       0.31    9.3   0.0    1.2  1  Frtz           WD repeat-containing and planar cell polarity 


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00093       2.1      24      37 ..      26      39 ..      10      40 .. 0.84
   2 ?    5.5   0.0     0.015        34      12      28 ..      57      74 ..      44      81 .. 0.74
   3 !   46.1   0.2   2.3e-15   5.2e-12       3      38 .]      92     128 ..      91     128 .. 0.92
   4 !    7.1   0.0    0.0049        11      11      38 .]     143     170 ..     132     170 .. 0.84
   5 !   11.5   0.1    0.0002      0.45       3      38 .]     176     213 ..     174     213 .. 0.79
   6 !   23.9   0.0   2.4e-08   5.3e-05       3      38 .]     226     262 ..     224     262 .. 0.90
   7 !   22.3   3.3   7.4e-08   0.00017       3      38 .]     271     325 ..     269     325 .. 0.79
   8 ?   -0.2   0.0         1   2.2e+03       2      13 ..     330     344 ..     329     368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00093
                EEEEEETTSEEEEE CS
        WD40 24 wlasGsdDgtvriW 37
                 l++Gs+D+ +r+W
  CDO72889.1 26 ILVTGSYDHEIRFW 39
                478*********** PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
                S.EEEEEEETTSSEEEEE CS
        WD40 12 s.vtslafspdgawlasG 28
                + v+ la spd+++la++
  CDO72889.1 57 GqVNRLAISPDKRLLAAA 74
                24*************976 PP

  == domain 3  score: 46.1 bits;  conditional E-value: 2.3e-15
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ +++GH +++t+++f+++g+wl++Gs+Dgt++iWd
  CDO72889.1  92 PIAIFEGHnGNITAVCFHSEGKWLVTGSEDGTIKIWD 128
                 5789****555*************************9 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0049
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                  +v+++ ++p++  l+s++  g ++ Wd
  CDO72889.1 143 APVNDVVVHPNQGELISCDQAGRIKQWD 170
                 34*************************9 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.0002
                 EEEEEE..SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtlt..GHssvtslafspdgawlasGsdDgtvriWd 38 
                 c+++lt  G ++ +s++  +dg+ l++Gs +g++++W+
  CDO72889.1 176 CTHELTpgGDTPMRSISLASDGSCLVAGSVKGKCYVWK 213
                 5666654233557899999******************6 PP

  == domain 6  score: 23.9 bits;  conditional E-value: 2.4e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  ++ + +H +  t l  spd ++la++s D t++iW+
  CDO72889.1 226 AVTMFQAHnKYLTRLLLSPDVRYLATCSADTTIKIWS 262
                 567799**777*************************5 PP

  == domain 7  score: 22.3 bits;  conditional E-value: 7.4e-08
                 EEEEEESS.SSEEEEEEETTSSEEEE...................EETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlas...................GsdDgtvriWd 38 
                 + +tl GH  +v+++afs d+a+l++                   +s D+t r+Wd
  CDO72889.1 271 HEKTLQGHqRWVWDCAFSADSAYLVTgayytgafrasvltdcvpaSS-DHTARLWD 325
                 5689****777*************99666666666666666666334.*******9 PP

  == domain 8  score: -0.2 bits;  conditional E-value: 1
                 EEEEEEESS.SS..E CS
        WD40   2 qclrtltGH.ss..v 13 
                 +++r + GH ++  v
  CDO72889.1 330 ETVRQYNGHqKGmdV 344
                 778999999776555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.017        38      32      59 ..      44      77 ..      20      85 .. 0.82
   2 !   18.3   0.1   9.6e-07    0.0022      36      75 ..      98     137 ..      93     149 .. 0.88
   3 ?    2.4   0.0     0.084   1.9e+02      35      69 ..     182     216 ..     167     220 .. 0.84
   4 ?    4.2   0.0     0.023        52      35      69 ..     231     265 ..     213     283 .. 0.78
   5 ?    2.6   0.0     0.076   1.7e+02      56      81 ..     315     340 ..     312     365 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.017
  ANAPC4_WD40 32 l......eedkedsevrsLaWkpdgklLavaysd 59
                 +      ++++e ++v+ La +pd +lLa a+++
   CDO72889.1 44 GicsrtiPRASEAGQVNRLAISPDKRLLAAAIHK 77
                 24444557889999***************99765 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 9.6e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  ++++++++++++ +gk L+ + +dg++++ d  s   +h 
   CDO72889.1  98 GHNGNITAVCFHSEGKWLVTGSEDGTIKIWDLRSNSHLHR 137
                  57899***************************99998886 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.084
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++ d   rs++   dg+ L+ +  +g++ + ++++
   CDO72889.1 182 PGGDTPMRSISLASDGSCLVAGSVKGKCYVWKIND 216
                  56788999*******************98887765 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.023
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +++++  + L  +pd + La   +d+++++ +++ 
   CDO72889.1 231 QAHNKYLTRLLLSPDVRYLATCSADTTIKIWSISP 265
                  45788899999*******************99864 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.076
  ANAPC4_WD40  56 aysdgevrlldaesgkvvhslsvkse 81 
                  a sd + rl d+++g++v++++ +++
   CDO72889.1 315 ASSDHTARLWDMSTGETVRQYNGHQK 340
                  5789999*************998876 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       2.1   4.8e+03     215     235 ..      26      44 ..      20      50 .. 0.76
   2 !   14.1   0.0   6.8e-06     0.015     202     242 ..     101     138 ..      93     151 .. 0.78
   3 ?    2.0   0.0      0.03        67     203     233 ..     144     173 ..     138     182 .. 0.84
   4 ?    0.2   0.0      0.11   2.4e+02      43      62 ..     205     224 ..     193     246 .. 0.78
   5 ?    3.1   0.0     0.014        31     210     238 ..     243     270 ..     228     282 .. 0.72
   6 ?   -2.8   0.0       0.9     2e+03     219     235 ..     315     331 ..     312     360 .. 0.68

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.1
                    EEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N 215 ilytlsskgvirvydlsasng 235
                    il+t s +++ir+++  a++g
     CDO72889.1  26 ILVTGSYDHEIRFWE--AWSG 44 
                    788999999999996..5666 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.8e-06
                    G-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEE CS
  Nucleoporin_N 202 eeivqlridssrrilytlsskgvirvydlsasngesslksd 242
                      i++++ +s+ ++l+t s++g+i+++dl +++   +l++ 
     CDO72889.1 101 GNITAVCFHSEGKWLVTGSEDGTIKIWDLRSNS---HLHRN 138
                    679999999999******************443...34333 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.03
                    -EEEEEEECCTCEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 203 eivqlridssrrilytlsskgvirvydlsas 233
                    ++  +++++ ++ l++ ++ g+i+ +dls +
     CDO72889.1 144 PVNDVVVHPNQGELISCDQAGRIKQWDLS-E 173
                    6778999*********************9.3 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.11
                    ETTEEEEEETTSSSS...EE CS
  Nucleoporin_N  43 vdnklflWnYnstasspstd 62 
                    v+ k+++W +n+ +s+ + +
     CDO72889.1 205 VKGKCYVWKINDERSDLPRF 224
                    67799******999776633 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.014
                    ECCTCEEEEEETTSEEEEEEEETTCEE-E CS
  Nucleoporin_N 210 dssrrilytlsskgvirvydlsasngess 238
                    ++  r l t s++ +i+++ +s++++ ++
     CDO72889.1 243 SPDVRYLATCSADTTIKIWSISPNYE-FK 270
                    55558999**************5544.33 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 0.9
                    EETTSEEEEEEEETTCE CS
  Nucleoporin_N 219 lsskgvirvydlsasng 235
                    +ss+++ r +d+s+ ++
     CDO72889.1 315 ASSDHTARLWDMSTGET 331
                    68999999999994433 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0041       9.2     219     285 ..      12      75 ..       3      97 .. 0.66
   2 !    6.0   0.1    0.0017       3.9     231     255 ..     113     137 ..      96     234 .. 0.83
   3 ?    2.2   0.0     0.025        56     229     250 ..     245     266 ..     225     281 .. 0.81
   4 !    5.2   0.0     0.003       6.8     236     256 ..     315     335 ..     312     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0041
                 EEEET......TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE CS
      Nup160 219 ldvavavvei.gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs 285
                 +++a+ v+++  + +l++ s d+++r W   +g c +ti       ++  ++ ++ ++p +  l +++
  CDO72889.1  12 AAPATTVARTdMSVILVTGSYDHEIRFWEAWSGICSRTIPRA----SEAGQVNRLAISPDKRLLAAAI 75 
                 3444445555588899999****************9998777....3333344444566555555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0017
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                 + l++ s dg++++W+l+++++l  
  CDO72889.1 113 KWLVTGSEDGTIKIWDLRSNSHLHR 137
                 56788899*************9865 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.025
                 TTTEEEEEETT-EEEEEETTTT CS
      Nup160 229 gqtylfalsrdgkLrvWnlltg 250
                 +  yl++ s d ++++W+++ +
  CDO72889.1 245 DVRYLATCSADTTIKIWSISPN 266
                 5679**************9755 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.003
                 EETT-EEEEEETTTTEEEEEE CS
      Nup160 236 lsrdgkLrvWnlltgkclati 256
                 +s+d++ r+W+ +tg ++++ 
  CDO72889.1 315 ASSDHTARLWDMSTGETVRQY 335
                 589************999875 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00051       1.1      14      48 ..     105     139 ..     102     179 .. 0.84
   2 !   11.3   0.0   8.9e-05       0.2      16      61 ..     192     237 ..     186     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00051
        Hira  14 asfLessgsyLlavtsvgllyvWnvkkkkvllppv 48 
                 a+ ++s+g++L+  +++g++ +W++++++ l+++ 
  CDO72889.1 105 AVCFHSEGKWLVTGSEDGTIKIWDLRSNSHLHRNY 139
                 678899*******************9999999765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8.9e-05
        Hira  16 fLessgsyLlavtsvgllyvWnvkkkkvllppvslapllssssrss 61 
                  L+s gs+L+a + +g +yvW+++ +++ lp+ +   ++++ +++ 
  CDO72889.1 192 SLASDGSCLVAGSVKGKCYVWKINDERSDLPRFQAVTMFQAHNKYL 237
                 58999************************99888888877766665 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.16   3.7e+02     260     288 ..      28      55 ..      20      87 .. 0.69
   2 !    6.9   0.0    0.0012       2.7     185     217 ..      97     130 ..      73     160 .. 0.82
   3 ?   -0.1   0.0      0.16   3.6e+02     191     223 ..     189     221 ..     147     233 .. 0.80
   4 !    6.6   0.0    0.0015       3.3     185     219 ..     231     266 ..     223     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
    Ge1_WD40 260 itgadnnselklWscelWtClqtikfaps 288
                 +tg+  ++e++ W + +  C +ti  a++
  CDO72889.1  28 VTGS-YDHEIRFWEAWSGICSRTIPRASE 55 
                 4544.467999998888889998865554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0012
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvy 217
                 e h  +i+   f ++G  l t sedG++k + + 
  CDO72889.1  97 EGHNgNITAVCFHSEGKWLVTGSEDGTIKIWDLR 130
                 45555899**********************9875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.16
    Ge1_WD40 191 veaafspdGtalatasedGevkffqvyledeee 223
                  + ++++dG  l + s  G+   ++++ e ++ 
  CDO72889.1 189 RSISLASDGSCLVAGSVKGKCYVWKINDERSDL 221
                 556788899999999999998888888766655 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0015
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvyle 219
                 + h   ++   +spd   lat+s+d ++k + +  +
  CDO72889.1 231 QAHNkYLTRLLLSPDVRYLATCSADTTIKIWSISPN 266
                 45543789999********************99654 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.2e-05     0.027     301     350 ..     163     212 ..     156     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
  PALB2_WD40 301 sGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlvy 350
                 +G i  Wdl    ct  l+p  d+    +  ++  s+l+aG  +G+ +v+
  CDO72889.1 163 AGRIKQWDLSENICTHELTPGGDTPMRSISLASDGSCLVAGSVKGKCYVW 212
                 68999******************************************997 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00014      0.31     261     344 ..     102     187 ..      98     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00014
        Frtz 261 qvislafnpdedkLllGceDssviLydeerkitklv..kaevvPsliswhpdsaillvasergelqifDlaLspiriqllsedveP 344
                 ++ +++f ++   L+ G+eD+++ ++d   +  +      e   + +  hp++  l+ +++ g+++ +Dl+    ++ l     +P
  CDO72889.1 102 NITAVCFHSEGKWLVTGSEDGTIKIWDLRSNSHLHRnyDNEAPVNDVVVHPNQGELISCDQAGRIKQWDLSENICTHELTPGGDTP 187
                 6788999999999**************877654444225666668899*********************99887777776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2484.76
//
Query:       CDO72890.1  [L=2106]
Description: hypothetical protein BN946_scf185002.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-175  584.4   0.0   1.5e-175  584.0   0.0    1.2  1  GATase_2         Glutamine amidotransferases class-II
   3.7e-156  519.9   0.0   5.7e-156  519.3   0.0    1.3  1  Glu_synthase     Conserved region in glutamate synthase
   6.4e-116  386.7   0.0   1.1e-114  382.7   0.0    2.1  2  Glu_syn_central  Glutamate synthase central domain
    3.9e-88  294.0   3.2    6.7e-88  293.3   3.2    1.4  1  GXGXG            GXGXG motif
    8.1e-27   94.2   0.0    4.7e-26   91.7   0.0    2.1  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    6.6e-22   77.4   0.1    1.3e-21   76.5   0.1    1.5  1  Fer4_20          Dihydroprymidine dehydrogenase domain II, 4F
    2.4e-08   33.6   0.6        0.2   10.9   0.0    3.8  3  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    4.4e-08   33.6   0.0     0.0013   19.2   0.0    4.0  3  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.9e-07   31.2   0.0    7.3e-07   29.3   0.0    2.1  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    1.6e-05   24.7   0.2     0.0051   16.4   0.0    2.5  2  DAO              FAD dependent oxidoreductase
    4.6e-05   22.3   1.1    0.00013   20.8   0.1    2.0  2  HI0933_like      HI0933-like protein
    0.00028   20.3   0.2      0.081   12.2   0.0    2.4  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    0.00044   19.7   0.0     0.0008   18.8   0.0    1.4  1  Amino_oxidase    Flavin containing amine oxidoreductase
    0.00082   18.6   1.2     0.0073   15.4   0.0    2.8  3  FAD_binding_2    FAD binding domain
     0.0031   16.9   0.1     0.0031   16.9   0.1    2.1  2  FAD_oxidored     FAD dependent oxidoreductase
     0.0062   17.0   0.4        2.7    8.5   0.0    2.6  2  NAD_binding_7    Putative NAD(P)-binding
     0.0099   15.2   0.0       0.02   14.2   0.0    1.4  1  FAD_binding_3    FAD binding domain
  ------ inclusion threshold ------
      0.012   14.6   0.6      0.095   11.7   1.3    2.1  2  FMN_dh           FMN-dependent dehydrogenase
      0.038   13.0   0.0        2.2    7.3   0.0    2.6  2  Lycopene_cycl    Lycopene cyclase protein
      0.048   12.9   0.4       0.19   10.9   0.0    2.0  2  Thi4             Thi4 family
      0.065   13.4   0.1       0.18   12.0   0.1    1.7  1  GATase_6         Glutamine amidotransferase domain
      0.091   11.8   1.4       0.59    9.1   0.0    2.4  2  GIDA             Glucose inhibited division protein A
       0.11   12.4   0.0       0.33   10.9   0.0    1.8  1  NAD_binding_9    FAD-NAD(P)-binding
       0.13   11.6   0.2       0.77    9.1   0.0    2.2  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.18   11.8   0.0         69    3.5   0.0    3.8  4  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.0   0.0  2.1e-178  1.5e-175       1     420 []       9     446 ..       9     446 .. 0.96

  Alignments for each domain:
  == domain 1  score: 584.0 bits;  conditional E-value: 2.1e-178
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHH.TT-----GGG-EEEEEEE-SSH.HHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeake.kgielpeageyavgmlflpkde.ekaeeakkileeiv 97 
                 CGvgfi+++kg++shkiv++a ++l+ ++HRGa+gad+++GDGaG+++ iP+ f+++e+++  g+elpeag+yavg++f++ ++    +++++i+++i+
  CDO72890.1   9 CGVGFICHIKGDQSHKIVSDARQLLCAMTHRGATGADSRDGDGAGVMTGIPHLFFKRETERdLGCELPEAGQYAVGNVFFKANNpVGLQQQQAIFSKIA 107
                 ********************************************************9998879****************987651668999999***** PP

                 HHTT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEE...E-TT-...........--HHHHHHHHHHHHHHHGGG.........-BTTBEEEEEESSEE CS
    GATase_2  98 eeeglevlgwRevpvdksvlgeaakesePsieqvfv...ekked...........lseeelerklyviRkriekeiakkk....aekefYicslssrti 178
                 ++ gl+vlgwRevp+d ++lg aa ++eP i q fv   +   +           ++ +++e +ly++Rk++++++          + fYicslss++i
  CDO72890.1 108 NDLGLRVLGWREVPTDGTILGPAAASKEPAILQPFVvlrS---HygdgntcrggaFDAKHFECQLYILRKHATHNMFVPFpflsVLSGFYICSLSSKNI 203
                 ***********************************95550...33445555667799****************99987556666899************ PP

                 EEEESS-GGGHHHHBHGGGSTT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHH CS
    GATase_2 179 vYkglltseqlkefykdlkdeelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsas 277
                 vYkg+l + q+ ++y+dl++  ++s++alvHsRfstntfPsW++aqP+R+ aHnGEintlrGn+nwm+are +l+s+l+gd+l+ l+Pi++++gsDsa+
  CDO72890.1 204 VYKGQLSPPQVYNYYHDLNHVLYRSHFALVHSRFSTNTFPSWDRAQPMRWAAHNGEINTLRGNRNWMRAREGVLSSSLFGDKLDFLYPIIESGGSDSAA 302
                 *************************************************************************************************** PP

                 HHHHHHHHHHTT.--HHHHHHHHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS-- CS
    GATase_2 278 ldnvlellvlsg.rslaealmlliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldl 375
                 +dnvlellv +g  +l+ea+m+liPeaw+ n+ +d+ekkafy++a++l+epWDGPal++f+dG+++ga+LDRnGLRP+Ry+vt++d++v+asEvG + +
  CDO72890.1 303 FDNVLELLVVNGvLTLPEAVMMLIPEAWQGNELMDPEKKAFYNWAACLQEPWDGPALFAFSDGRYCGANLDRNGLRPCRYVVTNEDIIVCASEVGAVYI 401
                 ************889************************************************************************************ PP

                 -GGGEEEEEE--TT-EEEEETTTTEEEEHHHHHHHHHTTS-HHHH CS
    GATase_2 376 eeeevvekgrlqPGrmllvdleegriledeeikkkiaskkpykew 420
                 ++e+v++kgrl+PGrmllvd+eegri++d+e+k+++a+k+++ +w
  CDO72890.1 402 SPEKVISKGRLKPGRMLLVDTEEGRIVDDKELKRNTARKQNFASW 446
                 ******************************************999 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  519.3   0.0  7.9e-159  5.7e-156       3     368 .]     830    1198 ..     828    1198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 519.3 bits;  conditional E-value: 7.9e-159
                    S-HHHHHHHHHHHHH---HHHHHHHHHHHTS.-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT-B- CS
  Glu_synthase    3 neievikllqkavqveskesidkyrekleerevlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgtks 97  
                    n+++ i+ lq+av+++++ ++d y+e+++e++++ ++r ll++++++++ i++e+vep+++i++r++t+amSyG++s+eah++la+amnrlg+ks
    CDO72890.1  830 NDPSGIANLQDAVREKNQRAYDAYAENANEQTKAVHLRGLLDFRFENATPIPIEQVEPWNEIVRRFVTGAMSYGSISMEAHSTLAIAMNRLGGKS 924 
                    566778899***************************************99********************************************* PP

                    EETTS---GGGGS-----.....SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSH CS
  Glu_synthase   98 ntGEGGedeerlktakdv.....aikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysi 187 
                    ntGEGGed+er  t  +      aikQvasgrFGvt++yL +a++l+ik+aQGakpgeGg+lpg+Kvs++ia++R+++ gv+liSP+phhdiysi
    CDO72890.1  925 NTGEGGEDAERSLTLPNGdtmrsAIKQVASGRFGVTSNYLADADELQIKMAQGAKPGEGGELPGHKVSASIARTRHSTAGVGLISPPPHHDIYSI 1019
                    ************99999889999************************************************************************ PP

                    HHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS CS
  Glu_synthase  188 edlaqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGg 282 
                    edl+qli+dLk+ n++a+vsvKlv+e gv+++a+gvaka+ad+ili+G++GGTGAs+++ ik+aGlP+el+lae++qtl+ ++lr rv++++dG+
    CDO72890.1 1020 EDLKQLIYDLKCSNPRARVSVKLVSEVGVGIVASGVAKAKADHILISGHDGGTGASRWTGIKYAGLPWELGLAETHQTLVLNDLRGRVTVQTDGQ 1114
                    *********************************************************************************************** PP

                    --SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT-S CS
  Glu_synthase  283 lktgadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgin 368 
                    l+tg+d+++a++lGA+++g++t++lia+gCim+r+Ch+ntCpvG+atqdp+Lr  +k+++++e+v+n+++++ae++r+++a+lg++
    CDO72890.1 1115 LRTGRDIAIAALLGAEEWGFATTPLIAMGCIMMRKCHLNTCPVGIATQDPQLR--AKFAGQPEQVINFFYYIAEDLRRYMAKLGFR 1198
                    *****************************************************..*****************************85 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.7   0.0  1.5e-117  1.1e-114       3     279 .]     482     767 ..     480     767 .. 0.96
   2 ?    1.7   0.0      0.21   1.5e+02     167     264 ..    1083    1200 ..    1054    1206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 382.7 bits;  conditional E-value: 1.5e-117
                      HHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EEE CS
  Glu_syn_central   3 qkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrlk 96 
                      + afgyt e+l++l+ pm ++gkea+gsmG+D+pla++s++prl+ydYF+qlfAqVTNPpiDpiRE++vmsle+++G+egnlle +++q++r+ 
       CDO72890.1 482 LLAFGYTVEQLNMLMLPMFTDGKEALGSMGNDAPLAAMSTQPRLIYDYFRQLFAQVTNPPIDPIRESIVMSLECYVGPEGNLLEMNPQQCHRIL 575
                      569******************************************************************************************* PP

                      ESSSB--HHHHHHH.....HHSSS-EEEEESEE.......SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHHHHHHHHHT CS
  Glu_syn_central  97 lesPiLteeeleklkkl.kekkefkaktlditfeae....aleealerlceeaeeavregaeilvLsDrkvseervpipslLavgavhhhLvrk 185
                      l sPiLt ee++++k+l  + +++ ++t+ditf++e    +++ aler+c+ea++a+++g+++++LsDr+++ +rvp+++l+a+g vhhhLv +
       CDO72890.1 576 LPSPILTIEEMNAMKNLkAAYTSWPSRTIDITFPKEfglpGYKLALERVCSEATQAIDDGIKVIILSDREIGPSRVPLSALVACGGVHHHLVTQ 669
                      ****************9756789**********88887777***************************************************** PP

                      T-GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-----HH....HHHHHHHHHHHHHHHHHTT--BHHHHHHS--EEE CS
  Glu_syn_central 186 glrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegalaeeele....knyrkavekGllKimskmGistlqSYkgaqifea 275
                      ++r kv+l++e++earevhh++vllgyGada++P+l++e+i+k+v+eg ++++++     +nyr++v+ G+lK+mskmGistlqSYkgaqifea
       CDO72890.1 670 KKRAKVALMIETAEAREVHHLCVLLGYGADAICPWLTMECIHKVVREGLVKDNKTLddlmDNYRHSVDGGILKVMSKMGISTLQSYKGAQIFEA 763
                      ************************************************884444334667********************************** PP

                      SSB- CS
  Glu_syn_central 276 vGls 279
                      +Gl+
       CDO72890.1 764 LGLH 767
                      **96 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
                       EE--HHHHHHHHHHHHHHTT-GGG-EEEEEESS--SHHHHHHHHHTT-S....EEEEHHHHHHHHHHHTTT.........S-.......... CS
  Glu_syn_central  167 vpipslLavgavhhhLvrkglrtkvslvvesgearevhhfavllgyGad....avnPylaletieklveeg.........al.......... 235 
                       + +p  L ++  h++Lv ++lr +v +    g++r+  ++a+   +Ga+    a +P +a+ +i  ++++          a+          
       CDO72890.1 1083 AGLPWELGLAETHQTLVLNDLRGRVTV-QTDGQLRTGRDIAIAALLGAEewgfATTPLIAMGCI--MMRKChlntcpvgiATqdpqlrakfa 1171
                       56777888999*************985.5569***************98777789999999999..44443244444444004444444443 PP

                       ----HHHHHHHHHHHHHHHHHHHTT--BH CS
  Glu_syn_central  236 aeeeleknyrkavekGllKimskmGistl 264 
                        + e+  n+   + + l + m+k+G  t+
       CDO72890.1 1172 GQPEQVINFFYYIAEDLRRYMAKLGFRTI 1200
                       23333488888888999999999998887 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.3   3.2   9.3e-91   6.7e-88       2     188 ..    1279    1465 ..    1278    1467 .. 0.99

  Alignments for each domain:
  == domain 1  score: 293.3 bits;  conditional E-value: 9.3e-91
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--TT-SS-GGGSB-S-SSTTTT CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpskeskfkaeeniivGnvvlyg 98  
                  +++n+dr++gt ls+++++ ygeeglp+dti+i+++GsaGqslgafla G+t+eleGdandyvGkglsgG+++++p+k+s+fkaeenii+Gnv+lyg
  CDO72890.1 1279 DVTNTDRALGTSLSHRVSRLYGEEGLPKDTIHIRMRGSAGQSLGAFLAPGITIELEGDANDYVGKGLSGGRLIVYPPKQSTFKAEENIIIGNVCLYG 1375
                  789********************************************************************************************** PP

                  --SEEEEESSB--SSTTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSSTHHHHB-TTT-EEEES-SHHH CS
       GXGXG   99 atgGklfirgkageRfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedekfekklnkelvelekvedeee 188 
                  at+G++firg a+eRfavrnsga+avveg+gdhgceYmtGG+vvvLg+tgrnfaaGmsgGiayvld+ ++f++k+n+e+vel kv+d++e
  CDO72890.1 1376 ATSGEAFIRGIAAERFAVRNSGANAVVEGTGDHGCEYMTGGRVVVLGSTGRNFAAGMSGGIAYVLDTAHTFASKVNMEMVELGKVTDPRE 1465
                  **************************************************************************************9877 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   6.5e-29   4.7e-26       1     285 [.    1737    2051 ..    1737    2060 .. 0.80

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 6.5e-29
                   CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2    1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdee 96  
                   k++++iG+GpAGlaaa +l++ag+ vt++ +++  ++g  ll + + +++ d++++++        i+l+++ e+v++ p+   ++  k+++ de 
   CDO72890.1 1737 KKIAIIGSGPAGLAAADQLNKAGHWVTVY-DRNDRMGG--LLMYGIPNMKLDKNVVQRR-------IDLMAA-EGVTFVPNT--FVG-KDVDPDEL 1818
                   589**************************.77777776..5668*********988875.......888888.888887777..776.67889999 PP

                   EEEESEEEE---E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..............SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSS CS
                   xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Pyr_redox_2   97 kiaydklvlAtGs.sprdlgipGvaenvgklvrtldsaealklkllp..............krivvvGgGyiGvElAaalaklgke.vtlveardr 176 
                   + + d +++AtG+ +prdl ipG + +++++  ++ +   ++ k l               k+++v+GgG +G ++ +++++ g++ vt  e +++
   CDO72890.1 1819 RRENDIVIVATGAtWPRDLRIPGREADGIHFAMEYLQ---MNTKSLLdselqngnyinakgKDVIVIGGGDTGNDCIGTAMRHGAKsVTNFELLPQ 1911
                   9***********88**********6666666333322...22222223335589999999999********************9988**9999998 PP

                   SS..TTS-...HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCE.............................EEESEEEE-S-E CS
                   xx..xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.............................xxxxxxxxxxxx RF
  Pyr_redox_2  177 ll..rald...kelsaaleealekeGvevklgtsvkeidgngekle.vvledgee.............................idadlvvvavGv 237 
                   +   r+ d   +++ ++ +    +  v+ ++g+ + e    ++  e vv+e+g+                              ++a+lv++a G+
   CDO72890.1 1912 PPvsRGRDnpwPQWPRIFRTDYGHTEVAAHFGKDPREYCISTK--EfVVDENGQLqglntvrvewtkdsggrwkmeevpgsekfFPAQLVFLALGF 2005
                   8777666655677778888888888999999999998777776..457777777777777777777788888899999999999***********6 PP

                   .EES-HHCSHCCT-EEEETTEEE-.-TTSBESSTTEEE-GGGCTECCSS- CS
                   .xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  238 .rpstelleeklglelderggivv.deflrtnvpgiyaiGDvaggkggpe 285 
                     p+ +ll +klg++ d r  i++ + ++ t+v+g+ya+GD+    +g  
   CDO72890.1 2006 lGPEADLL-KKLGVKQDARSNIETpKNKYSTSVEGVYAAGDCR---RGQS 2051
                   47899999.*************6625566899**********9...4444 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   1.8e-24   1.3e-21       1     112 [.    1614    1724 ..    1614    1725 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1.8e-24
                  HTTS-S-SB----HHHHHHHHTT----TT-HHHH..CSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.--- CS
     Fer4_20    1 raknfkevalglteeealeeAsRClqCkkapcvk..gCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepv 95  
                  r+k++ke++++lt+ee + +++RC++C  + c++  gCP+++ ip++ + + ++++++a++ +  tn++p+ +grvCp    CegaCvl+ ++ +pv
  CDO72890.1 1614 RVKDWKEISTRLTDEELKFQSARCMDCGVPFCQSdtGCPISNIIPKWNDLVFKDQWQDALNRLLMTNNFPEFTGRVCPAP--CEGACVLGINE-QPV 1707
                  5789****************************96559*****************************************99..*******9777.9** PP

                  -HHHHHHHHHHHHHHT- CS
     Fer4_20   96 aigklerfvadaareeg 112 
                   i+++e  ++d+  e+g
  CDO72890.1 1708 GIKSIECAIIDKGFEMG 1724
                  *********99887765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00028       0.2       2      30 ..    1741    1768 ..    1739    1797 .. 0.83
   2 !    7.7   0.1    0.0026       1.8     124     189 ..    1821    1901 ..    1784    1907 .. 0.65
   3 !   10.0   0.0   0.00053      0.38     253     305 .]    1991    2044 ..    1953    2044 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
  Pyr_redox_3    2 IiGaGPaGlaaaielkkagledylilEkg 30  
                   IiG GPaGlaaa +l+kag   +++ +++
   CDO72890.1 1741 IIGSGPAGLAAADQLNKAGH-WVTVYDRN 1768
                   9*****************98.57777776 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0026
  Pyr_redox_3  124 eAkkviiAtGefdkPnklnipGeeklvkhyskv................kefhkyagqkvvViGgknSavDaAlelvrkgae 189 
                   e + vi+AtG    P+ l+ipG e   +h++                   ++ + +g++v+ViGg++++ D     +r+ga+
   CDO72890.1 1821 ENDIVIVATGA-TWPRDLRIPGREADGIHFAMEylqmntkslldselqnGNYINAKGKDVIVIGGGDTGNDCIGTAMRHGAK 1901
                   56778999999.8999999999886555532111111222222222211344567899***********9998888888875 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00053
  Pyr_redox_3  253 kkvevkddvvlatGyk.pdlsflkkslfeldedgrpvlteeteetnvpglflaG 305 
                   +k+   + v+la+G+  p++++lkk ++++d+ + ++  +++ +t v+g++ aG
   CDO72890.1 1991 EKFFPAQLVFLALGFLgPEADLLKKLGVKQDARSNIETPKNKYSTSVEGVYAAG 2044
                   344445667788***63789********************************99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.36   2.6e+02      36      76 ..    1509    1549 ..    1479    1553 .. 0.84
   2 !   19.2   0.0   1.9e-06    0.0013       1      63 [.    1738    1809 ..    1738    1819 .. 0.81
   3 ?    6.8   0.0     0.014       9.7       2      33 ..    1879    1911 ..    1878    1919 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.36
                  TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox   36 rllDeeaskilqeklekngievllntkveeiegsedgvesv 76  
                  r+l+e+a+k+ +ek+++  i+++ ++++ +++  ++g+e +
  CDO72890.1 1509 RVLEEQAAKAKEEKMRQSIIDLVPSRTASQVDLASEGLEDI 1549
                  7899*************************999877776655 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.9e-06
                  EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.........TTSSHHHHHHHHHHHHHTTEEEECSEEE CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.........rllDeeaskilqeklekngievllntkv 63  
                  k++++G+G  gl +A  l++ g+ Vtv +r+d++           +lD+ + ++  + + ++g++++ nt v
  CDO72890.1 1738 KIAIIGSGPAGLAAADQLNKAGHWVTVYDRNDRMGgllmygipnMKLDKNVVQRRIDLMAAEGVTFVPNTFV 1809
                  79*******************************974433333333568888888888888889999988866 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.014
                  EEEECSSHHHHHHHHHHHHTT.SEEEEEESSSS CS
   Pyr_redox    2 vvvvGgGyiglElAgalaelg.kkVtvversdk 33  
                  v+v+GgG++g ++ g++ ++g k+Vt +e  ++
  CDO72890.1 1879 VIVIGGGDTGNDCIGTAMRHGaKSVTNFELLPQ 1911
                  89*************999988678898776665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     1e-09   7.3e-07       1      34 [.    1741    1774 ..    1741    1792 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1e-09
                     EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8    1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34  
                     I+G+G +Gl+aA  L kag+ v++++++dr GG 
     CDO72890.1 1741 IIGSGPAGLAAADQLNKAGHWVTVYDRNDRMGGL 1774
                     9*******************************95 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.2e-06    0.0051       1      33 [.    1738    1772 ..    1738    1774 .. 0.93
   2 ?    5.7   0.0     0.013       9.5     154     270 ..    1794    1887 ..    1785    1942 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.2e-06
                  EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO    1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33  
                  +++iiG+G +Gl++A +L ++g  Vt+++++d+ g
  CDO72890.1 1738 KIAIIGSGPAGLAAADQLNKAGhwVTVYDRNDRMG 1772
                  59****************99999********8876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
                  HHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETT CS
         DAO  154 raaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddg 250 
                  + ++a Gv+++ +t v g +     v        + +++ d v++a+Ga    ++  ++l++p + + g +++++ l+ ++ s      ++  ++  
  CDO72890.1 1794 DLMAAEGVTFVPNTFV-GKD-----VDPD-----ELRRENDIVIVATGAT---WP--RDLRIPGREADGIHFAMEYLQMNTKS------LL-DSELQ 1867
                  5677888888888444.432.....2222.....33322277******98...51..33467889999999999877664333......33.78889 PP

                  TTEEEEEETTSEEEEEESSE CS
         DAO  251 rgvyvtprkdgrvlvGgtad 270 
                   g y+ +  ++ +++Gg ++
  CDO72890.1 1868 NGNYINAKGKDVIVIGGGDT 1887
                  999****9989888899875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.8e-07   0.00013       2      36 ..    1738    1772 ..    1737    1779 .. 0.93
   2 ?   -0.6   0.1      0.57   4.1e+02       2      25 ..    1878    1901 ..    1877    1907 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                   SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like    2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36  
                   ++++iG G+AGl aA +++k+g+ V+++++++++g
   CDO72890.1 1738 KIAIIGSGPAGLAAADQLNKAGHWVTVYDRNDRMG 1772
                   799****************************9998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.57
                   SEEEE--SHHHHHHHHHHHHTT-- CS
  HI0933_like    2 dviviGgGaAGlmaAisaakrgkr 25  
                   dviviGgG  G  +  +a ++g++
   CDO72890.1 1878 DVIVIGGGDTGNDCIGTAMRHGAK 1901
                   9**********8888888777654 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011     0.081      18      61 ..    1725    1769 ..    1716    1776 .. 0.84
   2 ?    5.4   0.0     0.013       9.6      29      53 ..    1877    1901 ..    1866    1911 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                   ETTCEETCB---.EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C   18 tlaGgvpgvepa.kvlviGgGvaGlqAiatakglgakVtvlDvrp 61  
                    +  +vp  + + k+ +iG G aGl+A+   ++ g  Vtv+D + 
   CDO72890.1 1725 WMTPKVPSFRTGkKIAIIGSGPAGLAAADQLNKAGHWVTVYDRND 1769
                   5566777766652699**************************986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
                   -EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C   29 akvlviGgGvaGlqAiatakglgak 53  
                     v+viGgG  G   i ta++ gak
   CDO72890.1 1877 KDVIVIGGGDTGNDCIGTAMRHGAK 1901
                   579********************97 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-06    0.0008       2      29 ..    1747    1774 ..    1746    1777 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-06
                     HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase    2 aGLaaArqLlsaGfdVtvlEardrvGGR 29  
                     aGLaaA qL  aG+ Vtv+  +dr GG 
     CDO72890.1 1747 AGLAAADQLNKAGHWVTVYDRNDRMGGL 1774
                     9**************************6 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05    0.0073       2      36 ..    1739    1773 ..    1738    1795 .. 0.92
   2 ?   -2.9   0.6       3.9   2.8e+03       1      18 [.    1878    1895 ..    1878    1904 .. 0.70
   3 ?    0.4   0.0      0.38   2.7e+02     374     403 ..    2016    2048 ..    2009    2060 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
                     EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2    2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36  
                     + +iGsG AGLaAA ++++aG+ v+v +  +++gg
     CDO72890.1 1739 IAIIGSGPAGLAAADQLNKAGHWVTVYDRNDRMGG 1773
                     67*************************99998887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
                     SEEEE--SHHHHHHHHHH CS
  FAD_binding_2    1 DviViGsGlAGLaAAlea 18  
                     DviViG+G  G  +  +a
     CDO72890.1 1878 DVIVIGGGDTGNDCIGTA 1895
                     9*******7776555555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.38
                     -EEEBETTSBE...STTEEESSBTEEE-STCEE CS
  FAD_binding_2  374 gGvetdengrv...ldadgqpipGLYAaGevaa 403 
                      Gv+ d++++    +++  + ++G YAaG +  
     CDO72890.1 2016 LGVKQDARSNIetpKNKYSTSVEGVYAAGDCRR 2048
                     577777777776678888999*********984 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.3e-06    0.0031       2      44 ..    1739    1781 ..    1738    1804 .. 0.86
   2 ?   -1.4   1.0       1.5   1.1e+03       1      25 [.    1878    1902 ..    1878    1903 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-06
  FAD_oxidored    2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44  
                    + ++G+gpaG+aAA +  +aG  v + ++++++GGll  g+ +
    CDO72890.1 1739 IAIIGSGPAGLAAADQLNKAGHWVTVYDRNDRMGGLLMYGIPN 1781
                    78**********************************9988764 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
  FAD_oxidored    1 DvvVvGGgpaGvaAAiaAaraGakv 25  
                    Dv+V+GGg  G  +  +A r+Gak 
    CDO72890.1 1878 DVIVIGGGDTGNDCIGTAMRHGAKS 1902
                    9**********99999999999986 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0038       2.7       6      40 ..    1735    1769 ..    1734    1832 .. 0.66
   2 ?    5.7   0.1     0.027        19       3      32 ..    1872    1901 ..    1871    1905 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0038
  NAD_binding_7    6 kgkkvlvvGgGevAarkvrklleagakvtvvapev 40  
                     +gkk+ ++G G+ ++  + +l +ag  vtv++ + 
     CDO72890.1 1735 TGKKIAIIGSGPAGLAAADQLNKAGHWVTVYDRND 1769
                     689***************************99884 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.027
  NAD_binding_7    3 ldlkgkkvlvvGgGevAarkvrklleagak 32  
                     ++ kgk v+v+GgG+ +   + + ++ gak
     CDO72890.1 1872 INAKGKDVIVIGGGDTGNDCIGTAMRHGAK 1901
                     7899*************9999999999987 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.8e-05      0.02       4      34 ..    1739    1769 ..    1737    1772 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
                     EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3    4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34  
                     ++I+G+GpaGl +a  L +aG  v++ ++ +
     CDO72890.1 1739 IAIIGSGPAGLAAADQLNKAGHWVTVYDRND 1769
                     78*******************9999998865 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3   0.00013     0.095     234     303 ..    1056    1138 ..    1046    1145 .. 0.66
   2 ?   -1.7   0.0       1.6   1.1e+03     310     341 ..    1172    1203 ..    1164    1208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                  HHTTESEEEE--GGGTSSTT---HHHCH.............HHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHH CS
      FMN_dh  234 veaGvdgivvSNHGGRqldgapatidvL.............peiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpf 303 
                  ++a +d i++S H G    +  + i+                 + + ++gr++v  Dg  r+G D++ A  lGA+  +++   
  CDO72890.1 1056 AKAKADHILISGHDGGTGASRWTGIKYAglpwelglaethqTLVLNDLRGRVTVQTDGQLRTGRDIAIAALLGAEEWGFATTP 1138
                  56777888888887744444444444333333333322222223566789************************977666555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHH CS
      FMN_dh  310 gGeeGvervleilraelertmallGvksvael 341 
                  g  e v + +  + ++l+r ma lG+++++e+
  CDO72890.1 1172 GQPEQVINFFYYIAEDLRRYMAKLGFRTINEM 1203
                  55566777788899**************9986 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.077        55     186     216 ..    1497    1527 ..    1478    1538 .. 0.87
   2 ?    7.3   0.0     0.003       2.2       2      29 ..    1739    1764 ..    1738    1771 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.077
  Lycopene_cycl  186 ltFlYalPldsdrllvEeTelaskpeLpada 216 
                     + F+ ++Pld +r+l E+   a++++++++ 
     CDO72890.1 1497 PLFVRVMPLDYKRVLEEQAAKAKEEKMRQSI 1527
                     67******************99999998765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.003
  Lycopene_cycl    2 vvviGaGpAglslAarlteakpglkvvl 29  
                     +++iG+GpAgl+ A +l  +k+g  v++
     CDO72890.1 1739 IAIIGSGPAGLAAADQL--NKAGHWVTV 1764
                     79***************..777766665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.19      19      73 ..    1738    1793 ..    1734    1805 .. 0.81
   2 ?   -1.6   0.1       1.8   1.3e+03      15      31 ..    1874    1890 ..    1865    1901 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
                  EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTT..STTBSEEEEETTT CS
        Thi4   19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlG..Gqlfsaivvrkpa 73  
                   ++i+G+G++GL+aa  l k+ +  v++ +r+  +GG    G   +  ++ vv++  
  CDO72890.1 1738 KIAIIGSGPAGLAAADQLNKA-GHWVTVYDRNDRMGGLLMYGipNMKLDKNVVQRRI 1793
                  589*****************9.999******99999977666334666666666655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
                  HTEEEEEEE--SHHHHH CS
        Thi4   15 yaesDvvivGaGssGLt 31  
                      Dv+++G+G +G  
  CDO72890.1 1874 AKGKDVIVIGGGDTGND 1890
                  5568********99965 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00025      0.18       9      53 ..     225     263 ..     219     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
    GATase_6   9 lvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiyny 53 
                 l++++ al+H R +++  +  ++aqP+       + +hNGei + 
  CDO72890.1 225 LYRSHFALVHSRFSTNTFPSWDRAQPM------RWAAHNGEINTL 263
                 67899**********************......789******876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00083      0.59       1      29 [.    1738    1766 ..    1738    1804 .. 0.84
   2 ?    1.1   0.3      0.24   1.7e+02       1      24 [.    1878    1901 ..    1878    1905 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00083
                  CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA    1 dviViGgGhAGceAAlaaarlGakvlLit 29  
                  ++ +iG G AG++AA ++ ++G+ v+ + 
  CDO72890.1 1738 KIAIIGSGPAGLAAADQLNKAGHWVTVYD 1766
                  589*********************99983 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
                  CEEEE-SSHHHHHHHHHHHHTT-- CS
        GIDA    1 dviViGgGhAGceAAlaaarlGak 24  
                  dviViGgG  G  +  +a r Gak
  CDO72890.1 1878 DVIVIGGGDTGNDCIGTAMRHGAK 1901
                  8***********999999999987 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00046      0.33       1      65 [.    1740    1799 ..    1740    1809 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00046
  NAD_binding_9    1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtdqseelllNvpasemslftdd 65  
                     ai+G Gp+Gla++++L +       + +t++d++   g g   +   +  l  Nv+ +++ l++ +
     CDO72890.1 1740 AIIGSGPAGLAAADQLNKA-----GHWVTVYDRNDRmG-GLLMYGIPNMKLDKNVVQRRIDLMAAE 1799
                     8***************888.....699******76636.888888777888888888888877765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0011      0.77      35      70 ..    1735    1770 ..    1720    1789 .. 0.88
   2 ?   -1.4   0.0       1.8   1.3e+03      30      61 ..    1870    1901 ..    1851    1907 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
                    TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C   35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70  
                    +gk+++iiG G  G a+a+ l++ g  v++ydr+ +
    CDO72890.1 1735 TGKKIAIIGSGPAGLAAADQLNKAGHWVTVYDRNDR 1770
                    69*******************************966 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
                    SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-E CS
  2-Hacid_dh_C   30 lgkelsgktvGiiGlGrIGqavakrlkafgmk 61  
                       + +gk v +iG G+ G+  + ++   g+k
    CDO72890.1 1870 NYINAKGKDVIVIGGGDTGNDCIGTAMRHGAK 1901
                    455789*************9999888877776 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.5   2.5e+03      71     118 ..     382     429 ..     369     439 .. 0.80
   2 ?    3.5   0.0     0.096        69      12      46 ..    1736    1769 ..    1729    1786 .. 0.88
   3 ?   -0.8   0.0       2.1   1.5e+03      74      86 ..    1820    1832 ..    1814    1836 .. 0.82
   4 ?    2.5   0.0       0.2   1.4e+02       9      40 ..    1873    1904 ..    1865    1906 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.5
                   HHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S..EEEEE--SS-SB- CS
  Shikimate_DH  71 ellaeadvvisataseepilekeeveealkkrkkplllvDiavPRdve 118
                    ++ + d++++a     + ++ e+v +  + +  ++llvD    R v+
    CDO72890.1 382 YVVTNEDIIVCASEVGAVYISPEKVISKGRLKPGRMLLVDTEEGRIVD 429
                   567899*******99999999999988877766899999976666665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.096
                    T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46  
                    +kk+ +iG G  +  +a +L ++g   v+v  R+ 
    CDO72890.1 1736 GKKIAIIGSGPAGLAAADQLNKAGHW-VTVYDRND 1769
                    79******************999888.99999985 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.1
                    HT-SEEEE-SSSS CS
  Shikimate_DH   74 aeadvvisatase 86  
                    +e+d+vi+at+++
    CDO72890.1 1820 RENDIVIVATGAT 1832
                    799*******997 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.2
                    ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEE CS
  Shikimate_DH    9 slkekkvlliGaGemaelvakhLlakgvkkvv 40  
                    + k+k v++iG G +++  +   +++g+k+v+
    CDO72890.1 1873 NAKGKDVIVIGGGDTGNDCIGTAMRHGAKSVT 1904
                    67899**************9999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.26u 0.32s 00:00:01.58 Elapsed: 00:00:00.52
# Mc/sec: 12202.78
//
Query:       CDO72891.1  [L=355]
Description: hypothetical protein BN946_scf185002.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-15   56.8   0.0    3.1e-15   55.9   0.0    1.5  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
    2.7e-09   36.7   0.1    4.5e-09   36.0   0.1    1.3  1  zf-C2H2_3        zinc-finger of acetyl-transferase ESCO
    0.00061   20.2   0.0     0.0072   16.7   0.0    2.4  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.022   15.0   0.0      0.047   13.9   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      0.071   13.1   0.0       0.15   12.0   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   8.6e-19   3.1e-15       4      68 ..     283     348 ..     280     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 8.6e-19
  Acetyltransf_13   4 lcGisriWvssshRrkgiAtkLldaarenfiyglel..ekeevAFsqPTesGkklarkyfgtedflv 68 
                       +Gi r++vss+hRr giA++Ll aa+++fi+g+ l   + evAF+qPT  Gk+  +++    ++++
       CDO72891.1 283 PLGIPRLFVSSAHRRLGIASRLLSAAAATFILGCPLdpARGEVAFTQPTGMGKAVLESWGRG-GVRI 348
                      58**********************************77899*****************9654.4555 PP

>> zf-C2H2_3  zinc-finger of acetyl-transferase ESCO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   1.2e-12   4.5e-09       1      40 []      68     105 ..      68     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.2e-12
   zf-C2H2_3   1 QlvLdlgqksfgasqCkeCgMvYnpgspeDeklHkkfHar 40 
                 Ql+ +l+    ++  C+ C+++Y++g p+De+lHk ++ar
  CDO72891.1  68 QLHFSLDTPVLRT--CPLCDLSYTRGAPDDEALHKAHCAR 105
                 8899998777666..***********************85 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.22   8.1e+02       7      24 ..     193     210 ..     179     220 .. 0.71
   2 !   16.7   0.0     2e-06    0.0072      26      52 ..     285     315 ..     265     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.22
                     EEEETTEEEEEEEEEEES CS
  Acetyltransf_7   7 VaeddgkivGfialslld 24 
                     Va   +kivG++++++++
      CDO72891.1 193 VATTREKIVGCVVAQRIS 210
                     788889*****9988864 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2e-06
                     CTEEEEE-GGGTTSSHHHHHHHHTT....SE CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLleaae....kg 52 
                      i rl+V+ ++r+ Gi+++Ll aa+     g
      CDO72891.1 285 GIPRLFVSSAHRRLGIASRLLSAAAatfiLG 315
                     5677*****************9632234444 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.047      63      87 ..     286     310 ..     180     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
                     EEEEEESGGGTTSSHHHHHHHHHHH CS
  Acetyltransf_1  63 ieslaVspeyrgkGlGsaLlealee 87 
                     i +l+Vs+++r+ G++s+Ll a++ 
      CDO72891.1 286 IPRLFVSSAHRRLGIASRLLSAAAA 310
                     3389****************99975 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.2e-05      0.15      54      78 ..     286     310 ..     281     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.2e-05
  Acetyltransf_10  54 isllfVdpeyrgqGigkaLleavee 78 
                      i +lfV++++r+ Gi+++Ll a+ +
       CDO72891.1 286 IPRLFVSSAHRRLGIASRLLSAAAA 310
                      679*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2432.54
//
Query:       CDO72892.1  [L=584]
Description: hypothetical protein BN946_scf185002.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-33  113.7   0.1    1.3e-15   57.6   0.0    2.5  2  DEAD           DEAD/DEAH box helicase
    2.2e-24   85.4   1.3    3.6e-24   84.8   0.4    1.9  2  DUF4217        Domain of unknown function (DUF4217)
    1.4e-19   70.5   0.0    7.1e-19   68.2   0.0    2.1  2  Helicase_C     Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.034   14.4   0.5        2.9    8.2   0.4    3.1  2  AAA_22         AAA domain
      0.041   13.1   0.4       0.13   11.5   0.0    1.9  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
       0.11   11.8   0.0       0.16   11.2   0.0    1.2  1  SBF_like       SBF-like CPA transporter family (DUF4137)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.9e-18   8.6e-15       1      59 [.       2      63 ..       2      66 .. 0.94
   2 !   57.6   0.0   4.4e-19   1.3e-15      94     171 ..      63     137 ..      61     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 2.9e-18
                -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
        DEAD  1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreL 59
                t++Qa++ipl+++ +dv+v+a TGsGKTlaf+ip+l+ ++++     k++  al+++Ptr L
  CDO72892.1  2 TPVQASTIPLFMKHKDVVVEAVTGSGKTLAFVIPILEMLIRRerkLAKNEVGALVISPTRFL 63
                89**************************************999865899999********88 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 4.4e-19
                 HHTTCSEEEEEHHHHHHHH..HCTS..SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxxxxxxxxxxxx..xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD  94 ldngvdivvgtpgrlddll..stgk..lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                 l+ g+div+gtpgr+ ++l  + gk  ++++++++lVlDEadrlld gfs  + ril++l       ++qr++ ++SAT++  
  CDO72892.1  63 LSTGADIVIGTPGRVEEFLlgK-GKsvVSVKELEVLVLDEADRLLDLGFSAALTRILTHL-------PKQRRTGLFSATMTdA 137
                 56789************66652.443367*******************************.......78999********933 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.8   1.1e+04      46      61 .]     264     279 ..     263     279 .. 0.87
   2 !   84.8   0.4   1.2e-27   3.6e-24       3      61 .]     378     436 ..     376     436 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.8
     DUF4217  46 lealAksfGLleaPki 61 
                 l+++ +s +L++ P+i
  CDO72892.1 264 LANFTNSAALPSSPSI 279
                 788999******9986 PP

  == domain 2  score: 84.8 bits;  conditional E-value: 1.2e-27
     DUF4217   3 qkleslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 qk+++ +++dr+l+++A kAfvs+vraYs+h+a++iFr+k+Ldl +lAksfGLl++P++
  CDO72892.1 378 QKIRQKVLTDRALHDKAAKAFVSFVRAYSKHEASYIFRLKDLDLVGLAKSFGLLRLPRM 436
                 89********************************************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1     3e+03       6      59 ..     114     176 ..     111     184 .. 0.64
   2 !   68.2   0.0   2.4e-22   7.1e-19       5     111 .]     204     321 ..     200     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
                 HHHHHHHTTTTSEEEEEESSHHHHHH.HHHH...HHHT......TSTEEEESTTSTHHHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlek.vkll...lekk......gikvavlhgelpqnereeil 59 
                 l+++l++  +++++ +f+ t ++++   +l+   l+ +      ++++ ++ g++++ + +++ 
  CDO72892.1 114 LTRILTHLPKQRRTGLFSATMTDADAlSELVrvgLR-NparivvKVQAKKIKGKTTSADGKKVE 176
                 555666667888888888888887764232244322.235667778888888887777766665 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 2.4e-22
                 HHHHHH...HHTTTTSEEEEEESSHHHHHH.HHHH..HHHTTSTEEEESTTSTHHHHHHHHHHHH.....TTSSS.EEEESGGGTSSSTSTTESEEEES CS
  Helicase_C   5 allell...kleeeggkilifvntidrlek.vkll..lekkgikvavlhgelpqnereeileqfn.....kgesd.vLiatdvaerGidipkvnlVinf 91 
                 ++l+++    ++++  + +++  t+  ++   ++l  l  k+ +   lhg lp   r ++l++f         s  +L atdva+rG+d+p+v++Vi+f
  CDO72892.1 204 QMLRIIrheVQHQHSARFIVYFATCACVDYfYRVLgpLMPKNTTLFSLHGHLPPTARTRTLANFTnsaalPS-SPsILFATDVAARGLDLPDVDVVIQF 301
                 55555532224455555577777777664443444554555899********************85554333.555*********************** PP

                 SSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  92 dlprnvtsyiqriGRtgRag 111
                 d+p +++ + +r GRt+Rag
  CDO72892.1 302 DPPADPKAFSHRCGRTARAG 321
                 ******************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4   0.00096       2.9      80     120 ..      83     124 ..      13     140 .. 0.63
   2 ?    2.2   0.0     0.065   1.9e+02      17      70 ..     165     219 ..     164     255 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00096
      AAA_22  80 ealeqalraravielliiDEaqh.lr...seealeeLrsllnlsr 120
                  +    ++ +   e+l++DEa++ l+   s+++ + L +l +  +
  CDO72892.1  83 GKGKSVVSVKEL-EVLVLDEADRlLDlgfSAALTRILTHLPK--Q 124
                 333334444444.9*********5547544444444455555..4 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.065
      AAA_22  17 GKTtllrrlleql.deeakaee..erpevvfvtlpsstsskdllrellralglelka 70 
                 GKTt++   + +  ++e+   +  ++ + +++ +p+s++  ++lr + ++++++++a
  CDO72892.1 165 GKTTSADGKKVEReVIEER--RipANLQNYYMSCPASEKMLQMLRIIRHEVQHQHSA 219
                 8888887554444023333..246999999**********99999999999998877 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.13      85     151 ..     251     320 ..     238     331 .. 0.75
   2 ?   -4.1   2.4       2.4   7.2e+03     212     239 ..     489     516 ..     460     533 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.2e-05
  ERCC3_RAD25_C  85 iyGetseaerlkilqkfkknpkv....ntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLra 151
                    ++G+ + + r++ l +f ++ ++    + +f   v+   +DlP+  v+iq +  +   +  + r Gr  ra
     CDO72892.1 251 LHGHLPPTARTRTLANFTNSAALpsspSILFATDVAARGLDLPDVDVVIQFDPPADP-KAFSHRCGRTARA 320
                    78999999***********97652222678999*****************9754433.3344555555555 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.4
  ERCC3_RAD25_C 212 keeqkellqkvlaakdeeaeeeelekel 239
                    ++e+k+l +   ++  +++++e++++++
     CDO72892.1 489 RAEKKKLNSAWSEQMRRKEQREKRKEKK 516
                    3333333333222222222222222222 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.5e-05      0.16     249     298 ..      10      59 ..       2      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.5e-05
    SBF_like 249 llklskedeiavlfcgsaKslalgvplisvlfgsnpqlgllllPlllyhl 298
                 +l+++++d+++  + gs K+la+++p+ ++l   +++l++  + +l++ +
  CDO72892.1  10 PLFMKHKDVVVEAVTGSGKTLAFVIPILEMLIRRERKLAKNEVGALVISP 59 
                 7899****************************999999998887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1968  (0.109766); expected 358.6 (0.02)
Passed bias filter:                      727  (0.0405488); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 4022.15
//
Query:       CDO72893.1  [L=829]
Description: hypothetical protein BN946_scf185002.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-94  316.4   0.4    1.3e-91  308.4   0.0    3.0  2  SOG2       RAM signalling pathway protein
    7.9e-10   38.3   6.0      8e-06   25.5   0.4    3.0  3  LRR_8      Leucine rich repeat
    1.5e-09   38.0   0.6    3.2e-05   24.2   0.2    2.6  2  LRR_4      Leucine Rich repeats (2 copies)
     0.0055   16.2   1.4     0.0098   15.4   1.4    1.4  1  LRR_9      Leucine-rich repeat
  ------ inclusion threshold ------
      0.051   12.6   0.5       0.24   10.4   0.0    2.0  2  Perilipin  Perilipin family
        1.2    9.9   6.4         17    6.4   0.1    4.6  5  LRR_1      Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   4.2      0.32   9.5e+02     239     323 ..     155     238 ..     112     277 .. 0.45
   2 !  308.4   0.0   4.3e-95   1.3e-91       1     507 []     280     775 ..     280     775 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.32
        SOG2 239 fnlsrsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsnt 323
                 f + ++r+  s ++s sp a+++   ++++sa ++g ++++++  P + +  s + + l ++s++++  + ++t  +  ++s+r++t
  CDO72893.1 155 FVSRAARKGISRSPSRSPEASIS---PRDESALTNGaAHTNHTRLPSQPNGASGSrVPLRAPSVKKSLPDLRPTRLQLPNGSHRAAT 238
                 33334444444444444444444...2222223333344444444444333333323333333333222222222222222333332 PP

  == domain 2  score: 308.4 bits;  conditional E-value: 4.3e-95
        SOG2   1 YfrRLSvLPeetiskavkvpllelVdaaRglLFalsqihqairqitsfvkeeriavslerllysasshidnLieaLerfdslesrrgtpspsvdravik 99 
                 YfrRLS+L   tiska+++ ll +Vda Rg+LFalsqi+q+++++t+++++er++ +l+++l +as+++ +Li+aL+rfds  srr+ p ps +rav++
  CDO72893.1 280 YFRRLSTLSAATISKAIPEALLTVVDAVRGILFALSQIYQTLQHYTVYAIDERLSAVLQKVLGPASTYMSQLIQALDRFDSV-SRRALPIPSICRAVVE 377
                 **********************************************************************************.**************** PP

        SOG2 100 lCktivsaFkkiisvLrknlkafvesdDvrYiRtllLmlygSmaEvrnawksiapeleavqpl..............kptaskkkragrtksksistts 184
                 +C+++v++F+k +++L ++lk++ ++dDvrY+R++l+ ly++maE++ aw+s+ ++ +av+p+              ++t++  ++a++ k++++ ++ 
  CDO72893.1 378 SCRDNVTVFSKAVGMLALQLKVLAKHDDVRYTRQMLMVLYCAMAEIAAAWQSMRSQIDAVRPYlwdarpplssksygSKTPTLRTTASADKPRPPASAP 476
                 *****************************************************************9877777766654444444455555544444444 PP

        SOG2 185 sgssstlvssaesstesrassvt.ytart..........RhagsfsaqdveqGaaltplrsd..qipfnlsrsrrssssgnsaspaangaqsetsersa 270
                 ++ s  ++ +  ++t+sra  +t  t+r+          Rhagsfs +dv+ G++l++  +d   +pf            ++a +   +++s++++   
  CDO72893.1 477 PTAS--PTFPPLQETPSRAHLRTtATQRSldlgkshisrRHAGSFSLKDVQIGKMLPS-YVDvpPPPF------------PPALNGGAFQHSTPTQ--- 557
                 3333..333334444444444332455446666666777******************3.333214444............2222222222222111... PP

        SOG2 271 sssgvqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsnt.nasastprslattpappasaesfastltasrintlaavDeqllet 368
                    + ++     Plg++  +                  l+ +s sr+ s+s+   +s+s p++  + +     ++++              vD+++  +
  CDO72893.1 558 --PVRTMRRLVLPLGQQGHD------------------LQIGSHSRQGSQSSLlAPSNSSPQLGGNLSG----SSTL--------------VDKEVIGA 618
                 ..112223333344433332..................2233333332222222455556666665444....3343..............9******* PP

        SOG2 369 letavklalvvysqlteeiskvaeassagqqrlteelakkirdLtdtcrqameltkaLrerLsllklkedlsekgsttsektklwedinaFlksivsil 467
                  + av++a+++++++ e +++  +   ++ + +++  +   ++ ++ +  a+++t++Lr+++ ++  +e    + s + + ++l +d++ F+k++++++
  CDO72893.1 619 MKAAVEAAPEIWQLMDEMLASEDS---HAGEGSKSGGR---EEFREMLARAKDVTERLRQSIAAV--QE---VAHSHAVDGKALHDDAHIFVKTVIQLS 706
                 ***************999954443...33444444444...56667778899*************..34...577789999****************** PP

        SOG2 468 aliK.............................elslmhelPnevrpnLaslakatkevtvlLdlsSyk 507
                 + +K                             +l +++ l++++r+++ +l++at+e+  lL++sS++
  CDO72893.1 707 NVLKtrgttvpppsssstppsvprpgaaatvqpNLGSSSALSSTLRTKMVRLTNATQEFVMLLHVSSFS 775
                 *******************************************************************96 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.8   6.1e-09   1.8e-05      20      61 .]       2      42 ..       1      42 [. 0.96
   2 !   25.5   0.4   2.7e-09     8e-06       1      61 []      30      88 ..      30      88 .. 0.96
   3 ?   -1.2   0.0      0.58   1.7e+03       5      22 ..     503     520 ..     502     525 .. 0.56

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.1e-09
                SSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 20 aFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                aF+ ls+L++L L+nN+ +++ p+++  +psL+ Ld+s+N++
  CDO72893.1  2 AFSLLSRLRYLVLKNNNFSVF-PDVLTIMPSLEILDISRNKI 42
                6888*****************.9*****************97 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 2.7e-09
                TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                p+L++Ld+s+N+++ l+ e  + l nL+v++L  N+l++l p  ++ +++L  L +++N+L
  CDO72893.1 30 PSLEILDISRNKIKRLPSEPGS-LVNLRVFSLAKNKLHRL-PPYLARFRQLSILKVDQNPL 88
                78******************99.*****************.899***************97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.58
                 EEE-TTS--SEE-TTSST CS
       LRR_8   5 sLdLsnNrltslddeaFk 22 
                 sLdL +++++  + ++F+
  CDO72893.1 503 SLDLGKSHISRRHAGSFS 520
                 555555555555555554 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   1.1e-08   3.2e-05       2      39 ..       8      45 ..       7      49 .. 0.88
   2 !   11.5   0.0   0.00011      0.32       2      36 ..      54      88 ..      53      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
                S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4  2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39
                +L++L L nN+ + +p  l  +p+L+ Ld+s+N +i++l
  CDO72893.1  8 RLRYLVLKNNNFSVFPDvLTIMPSLEILDISRN-KIKRL 45
                7*************9997667*********999.88777 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
                S--EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4  2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnli 36
                nL+v +L+ N+l  +p+ l+ + +L  L + +N ++
  CDO72893.1 54 NLRVFSLAKNKLHRLPPyLARFRQLSILKVDQN-PL 88
                9****************8777********9777.44 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.4   3.3e-06    0.0098      60     131 ..       3      71 ..       1      88 [. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.3e-06
       LRR_9  60 fPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkkey 131
                 f ll rl+ l+l+nn    + +++  ++P+le l ++ n++++l   +P  sl +l+++sl kn + + + y
  CDO72893.1   3 FSLLSRLRYLVLKNNNF-SVFPDVLTIMPSLEILDISRNKIKRLPS-EP-GSLVNLRVFSLAKNKLHRLPPY 71 
                 899**********9986.68899999******************99.88.6899**********99988766 PP

>> Perilipin  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.9e-05      0.24     205     252 ..     275     322 ..     262     355 .. 0.85
   2 ?   -0.3   0.1      0.14   4.2e+02     173     250 ..     631     708 ..     605     713 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.9e-05
                 HHTT-EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Perilipin 205 kkkpsyfvRLGsLSaklrerAyqhsleklrqakqraqealaqlsstld 252
                 ++++syf+RL +LSa   ++A+ ++l  + +a   +  al+q+ +tl+
  CDO72893.1 275 TERNSYFRRLSTLSAATISKAIPEALLTVVDAVRGILFALSQIYQTLQ 322
                 5679****************************************9997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
                 XXXX-EESS-HHHHHTT----TT--HHHHHHHHHTT-EEEEGGGS-HHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH CS
   Perilipin 173 elvdhyLPlteeelaalaeavegseeasveeqkkkpsyfvRLGsLSaklrerAyqhsle..klrqakqraqealaqlsst 250
                 +l+d++L  +++  a + +++ g+ee  +   ++ +  + RL++  a ++e A  h+++  +l++  +   +++ qls++
  CDO72893.1 631 QLMDEMLASEDSH-AGEGSKSGGREEFREM-LARAKDVTERLRQSIAAVQEVAHSHAVDgkALHDDAHIFVKTVIQLSNV 708
                 4455555443333.3334444444444322.3345566666666666666666666663213444444444666666655 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.24   7.1e+02       1      16 [.       8      23 ..       8      26 .. 0.82
   2 ?    6.4   0.1    0.0058        17       1      17 [.      31      47 ..      31      51 .. 0.89
   3 ?    0.6   0.0      0.49   1.5e+03       1      18 [.      54      70 ..      54      75 .. 0.78
   4 ?   -3.2   0.0         6   1.8e+04       2      15 ..      78      91 ..      77      96 .. 0.72
   5 ?    0.0   0.0      0.73   2.2e+03       3      21 ..     502     520 ..     502     521 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.24
       LRR_1  1 nLrhLdLsnnpllglp 16
                +Lr+L L nn+++ +p
  CDO72893.1  8 RLRYLVLKNNNFSVFP 23
                69*****999986555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0058
       LRR_1  1 nLrhLdLsnnpllglpp 17
                +L+ Ld+s+n + +lp+
  CDO72893.1 31 SLEILDISRNKIKRLPS 47
                69*********998887 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.49
       LRR_1  1 nLrhLdLsnnpllglppn 18
                nLr+  L  n l   +p+
  CDO72893.1 54 NLRVFSLAKNKLH-RLPP 70
                8***********5.5554 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 6
       LRR_1  2 LrhLdLsnnpllgl 15
                L  L + +npl+  
  CDO72893.1 78 LSILKVDQNPLEWP 91
                66788899999644 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.73
       LRR_1   3 rhLdLsnnpllglppnsfq 21 
                 r+LdL+  ++++ ++ sf+
  CDO72893.1 502 RSLDLGKSHISRRHAGSFS 520
                 79*******9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5526.89
//
Query:       CDO72894.1  [L=796]
Description: hypothetical protein BN946_scf185002.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-18   64.1   1.1    1.6e-17   63.4   1.1    1.4  1  FYVE         FYVE zinc finger
    2.1e-16   59.3   1.7    5.8e-16   57.9   1.7    1.8  1  Rbsn         Rabenosyn Rab binding domain
     0.0043   17.0   7.9     0.0075   16.2   5.8    2.1  2  zf-C2HC5     Putative zinc finger motif, C2HC5-type
  ------ inclusion threshold ------
       0.17   12.1   1.7       0.21   11.8   0.6    1.7  2  FYVE_2       FYVE-type zinc finger
       0.36   11.0   1.3       0.71   10.1   1.3    1.4  1  Prok-RING_2  Prokaryotic RING finger family 2


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   1.1   4.5e-21   1.6e-17       2      65 ..     481     590 ..     480     593 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 4.5e-21
                 ---...--SB-TTT--B-.-SSS--EE-TTT--EE-..........STTS-EEE.EE...................................GGGTEEE CS
        FYVE   2 kwkddsevkkCeiCakkF.sllrrrhhCrlCGkvvC..........ekCssklvall...................................ekeaeek 54 
                  w+dd++v++C+ C+++F  l++r+hhCrlCG+++C          + Cs  ++ ++                                   e+e+  k
  CDO72894.1 481 PWEDDAAVSQCPLCNASFhPLTNRKHHCRLCGRIICslpvkypqrpQPCSLLFFVDQstgrieevgegvdygvrrrtpstagkvgkrgevlsEEEKFLK 579
                 6*****************8899**************999999999999997777666778888888888888888888889999999999888888899 PP

                 EEEE-HHHHHH CS
        FYVE  55 svrvCkeClae 65 
                  vr+C++C+  
  CDO72894.1 580 GVRICRDCKPV 590
                 99******865 PP

>> Rbsn  Rabenosyn Rab binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   1.7   1.6e-19   5.8e-16       1      42 []     736     777 ..     736     777 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.6e-19
        Rbsn   1 vLeEQkflveemIkqAkkarrfDEvatLeeNLkELqeEidrl 42 
                 +L+EQ++l+e ++++Ak++r+f++v+tL++NL+E+++Ei+r+
  CDO72894.1 736 PLLEQEALLETFVEEAKAHRKFEDVKTLKSNLREIRAEIERI 777
                 9***************************************96 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   5.8   2.1e-06    0.0075       5      38 ..     493     530 ..     489     532 .. 0.80
   2 ?    0.0   0.0      0.24   8.7e+02      34      53 ..     578     600 ..     568     601 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
    zf-C2HC5   5 nCqatrHpLleaapnClnCGkiiCakegls....kpCs 38 
                  C+a+ HpL +    C  CG iiC+         +pCs
  CDO72894.1 493 LCNASFHPLTNRKHHCRLCGRIICSLPVKYpqrpQPCS 530
                 5***********************97544333556665 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.24
    zf-C2HC5  34 s...kpCsfCgspllsseerqel 53 
                       C  C+  ll ++ rq++
  CDO72894.1 578 LkgvRICRDCKPVLLRQQYRQDM 600
                 33447899***999999999988 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6     6e-05      0.21      50      84 ..     484     518 ..     469     531 .. 0.82
   2 ?   -3.4   0.0       3.1   1.1e+04      71      78 ..     581     588 ..     564     594 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
      FYVE_2  50 aklgethCilCleefkllvnskrqCldCklnvCkk 84 
                    ++++C lC  +f+ l+n k++C  C   +C  
  CDO72894.1 484 DDAAVSQCPLCNASFHPLTNRKHHCRLCGRIICSL 518
                 5567899**************************86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
      FYVE_2  71 krqCldCk 78 
                  r C dCk
  CDO72894.1 581 VRICRDCK 588
                 46677776 PP

>> Prok-RING_2  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.3    0.0002      0.71       9      34 ..     490     517 ..     484     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
  Prok-RING_2   9 vcdlcata.hplaglr.qcvlcGrWacd 34 
                   c lc+++ hpl++ +  c lcGr  c+
   CDO72894.1 490 QCPLCNASfHPLTNRKhHCRLCGRIICS 517
                  59***97669**997537*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 4872.05
//
Query:       CDO72895.1  [L=353]
Description: hypothetical protein BN946_scf185002.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-35  119.9   0.0    3.7e-16   59.0   0.0    2.1  2  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   2.1e-20   3.7e-16       3     118 ..      15     131 ..      13     134 .. 0.81
   2 !   59.0   0.0   2.1e-20   3.7e-16       2     120 ..     189     318 ..     188     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 2.1e-20
                  HHHHHHCTTT.SSEEEEEEECTTTEEEEEESS-.......HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHH CS
  Cofilin_ADF   3 eafkelksgkktkyilfkidddkeeivveeege.......tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskda 93 
                  +af e  +++  +   +ki++++e++v++++ +       +++ l++ l+++ p Y++++++      + +s+++ +++vPd+a+++ kmlya+++++
   CDO72895.1  15 SAFSEAVESR--NIRFLKISIQNESLVPSHTVApsgtleeDLDRLTDILDDDVPAYVLVRLD------NPQSEWLAVYYVPDTAKVRDKMLYAATRNT 104
                  6777777777..56777888889999999944455546688888****************98......34588************************* PP

                  HHHHCTTSEE.E..EEE-CGGCCSHHHH CS
  Cofilin_ADF  94 lkkelkgisv.e..ieatdldelteeel 118
                  l k+l g ++ +  i+at++ +l  e+ 
   CDO72895.1 105 LTKSL-GSAHfTdnIFATSKADLGSEAY 131
                  *****.66643457*********88765 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 2.1e-20
                  HHHHHHHCTTT.SSEEEEEEECTTTEEEEEESS-.HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHC CS
  Cofilin_ADF   2 keafkelksgkktkyilfkidddkeeivveeege.tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkel 98 
                  ++a+k+l   ++ + ++++id+ +e++ +++++e +++ l +++p ++p Ya++ + ++  +   r ++v I+++P+++p++++mly+s   ++++ +
   CDO72895.1 189 QDAIKDLGAAEDSRLVVLSIDPATETLLLSSTQEiDVSGLGNAIPATDPSYAFFAWPHSLTS-PPRREIVPIYSCPSASPVRHRMLYSSAVLSVVNDV 285
                  78999999999********************99999999**********************9.9*************99*****************55 PP

                  T......TSE....EE.EEE-CGGCCSHHHHHH CS
  Cofilin_ADF  99 k......gis....ve.ieatdldelteeelke 120
                  k      g +       +e++d+ el+e++l +
   CDO72895.1 286 KellsssGSTstlaSRkVETSDPLELDEKYLIS 318
                  44444443332222315***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2444.65
//
Query:       CDO72896.1  [L=550]
Description: hypothetical protein BN946_scf185002.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-105  349.8   0.7      3e-63  213.1   0.1    2.1  2  CoA_trans        Coenzyme A transferase
     0.0017   18.3   0.0     0.0032   17.4   0.0    1.4  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 
     0.0031   17.5   0.3       0.04   13.9   0.0    2.7  3  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   0.1     5e-67     3e-63       3     217 .]      69     301 ..      67     301 .. 0.98
   2 !  135.5   0.1   2.9e-43   1.7e-39       3     215 ..     337     534 ..     335     536 .. 0.96

  Alignments for each domain:
  == domain 1  score: 213.1 bits;  conditional E-value: 5e-67
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHT..TTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsg..vkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpq 97 
                 +++ea+a ++k+G++++ GGFgl+g+P +li+ala+++  vkdlt ++++ g   lglg+ll +g++ kv+asy+g   n+ f++ +l+g++++el+pq
  CDO72896.1  69 SVEEAIA-DVKSGDVLLSGGFGLCGTPDTLIEALAKKKdeVKDLTAVSNNVGSgeLGLGKLLYTGQISKVLASYIGG--NKHFEQLYLNGQISLELIPQ 164
                 789****.*****************************999***********9999**********************..******************** PP

                 HHHHHHHHHHHHTEETTEEEESTTTTSHGGTT....................ESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHS CS
   CoA_trans  98 gtlaerlraGgaglpelgfltntgigtlvapk....................lkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnk 176
                 gtl+ rl+a +ag p  +f+t+tg  t v+++                    +k++++f+G++++lepa++ dva+i+a+k de+gn vf+ +a nf+ 
  CDO72896.1 165 GTLVGRLHAHAAGFP--AFYTPTGASTAVEEGsipirlkeggmkagvavpgvKKETREFNGRKFVLEPAIAGDVAFIRAWKVDEVGNCVFRYTANNFSS 261
                 ***************..***********************************99********************************************5 PP

                 HHHHHHEEEEEEEEEEEECTTSSECCCESBTGGGHSEEEET CS
   CoA_trans 177 paiaeaakvtileveeivekgkldpekvliPgvlvdavvea 217
                  +++ +ak ti+e e+iv++g+l+p++++ Pg++vd++v+a
  CDO72896.1 262 TMAR-NAKLTIVEAENIVPVGSLSPNAIHLPGIYVDRIVQA 301
                 5555.9*********************************85 PP

  == domain 2  score: 135.5 bits;  conditional E-value: 2.9e-43
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtla 101
                 ++a ++ake+kdG +v++G    ig+P +l+ + ++     ++ ++se+g+lg+gp++ + +v+ +i+++g+etv+   g++++++ ++f+ +++g+++
  CDO72896.1 337 RIARRAAKELKDGFHVNLG----IGMP-TLVPEFLPP--GVKVWLQSENGILGMGPYPPKDKVDPDIINAGKETVTLLPGSAVFDSYESFA-MIRGGHI 427
                 57889999***********....****.********9..8899************************************************.******* PP

                 HHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEES.SSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 102 erlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepa.lkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 +++ +G++++++ g+++n +i+    +k   v+g+gGa+++++++ +++++++++++ +d+ +++  +++++ +++ a++  +++t l+v+++++ + +
  CDO72896.1 428 DVAILGAMQVSQAGDIANFMIP----GK--LVKGIGGAMDLVSNPdKTKVIVVMEHCARDGSPKILKQCELPLTGARAVS--QIITELAVFDVDRRAGE 518
                 **********************....77..9**********99874779**************************99999..99*************** PP

                 ECCCESBTGGGHSEEE CS
   CoA_trans 200 dpekvliPgvlvdavv 215
                 +++++l +gv+ ++v 
  CDO72896.1 519 LTLTELAEGVSLEEVR 534
                 *************996 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.3e-07    0.0032      35     128 ..     428     514 ..     398     529 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.3e-07
                      EEEEEE-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSECE-TTT-SEEEETTEEEE-TT CS
  AcetylCoA_hyd_C  35 vvsinsalevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvtttrhdvdyvvTEyGiadLrg 128
                       v+i  a++v   G ++  ++ g+ v G+Gg +d v++  +    k i++++ +a++g+  +I+ +++     t     v+ ++TE  + d+  
       CDO72896.1 428 DVAILGAMQVSQAGDIANFMIPGKLVKGIGGAMDLVSNPDK---TKVIVVMEHCARDGS-PKILKQCE--LPLTG-ARAVSQIITELAVFDVDR 514
                      58999********************************9988...99**********998.99*99999..55555.555888899987777665 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.7e-06      0.04       9      53 ..      67     111 ..      61     116 .. 0.88
   2 ?   -1.1   0.0      0.26   1.6e+03     126     168 ..     235     278 ..     214     302 .. 0.68
   3 ?   -1.1   0.1      0.27   1.6e+03     125     144 ..     427     450 ..     404     479 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.7e-06
  AcetylCoA_hydro   9 lkepeeaaelvkngshielsgftavgtakaipkylakrkvekenv 53 
                        + eea+  vk+g+ +  +gf   gt+  + ++lak+k+e +++
       CDO72896.1  67 WDSVEEAIADVKSGDVLLSGGFGLCGTPDTLIEALAKKKDEVKDL 111
                      34589************************************9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.26
  AcetylCoA_hydro 126 DvalieataldedGylnlGvg.vrakKviiEvaelvvivvkknp 168
                      Dva+i a  +de G  ++  +  ++   ++  a+l +++ ++ +
       CDO72896.1 235 DVAFIRAWKVDEVGNCVFRYTaNNFSSTMARNAKLTIVEAENIV 278
                      99999999999999887776543344444444444444444444 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.27
  AcetylCoA_hydro 125 iDvalieataldedG....ylnlG 144
                      iDva++ a  + + G    ++ +G
       CDO72896.1 427 IDVAILGAMQVSQAGdianFMIPG 450
                      99***9999999999744433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3773.05
//
Query:       CDO72897.1  [L=539]
Description: hypothetical protein BN946_scf185002.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-95  318.7   3.7    1.3e-54  184.9   0.6    2.1  2  CoA_trans        Coenzyme A transferase
  ------ inclusion threshold ------
      0.045   13.7   0.1      0.084   12.8   0.1    1.4  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.6   1.4e-58   1.3e-54       3     217 .]      46     288 ..      44     288 .. 0.98
   2 !  135.0   0.1   2.6e-43   2.4e-39       3     214 ..     326     522 ..     324     525 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 1.4e-58
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHT.TTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsg.vkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqg 98 
                 +a+eav+ ++k+G++++ GGFgl+giPe+li+a+ ++  vk+lt ++++ag+   gl +l+++g+ +kv++sy g   n+ +++++l+g++ +el+pqg
  CDO72897.1  46 SADEAVK-DVKSGDIILSGGFGLCGIPETLITAMTKRPeVKNLTAVSNNAGAgdHGLVKLIKTGQLDKVMISYLGG--NKYLEAAYLNGDVGIELVPQG 141
                 899***9.**************************99878***********9999**********************..********************* PP

                 HHHHHHHHHHHTEETTEEEESTTTTSHGGTT....................ESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSH CS
   CoA_trans  99 tlaerlraGgaglpelgfltntgigtlvapk....................lkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkp 177
                 tl+ rl+a ++g p  + +t+tg  t v+ +                    +k+ + f+G+ +ilepa++ dva+++a+kade+gnlvf+ +a n+n +
  CDO72897.1 142 TLVARLHAHASGEP--ALYTPTGANTAVETGgipirynpggmkagvmipgnKKEARIFNGRRFILEPAIAGDVAFVHAWKADEVGNLVFRYTANNYN-G 237
                 **************..************9999*******************99********************************************.6 PP

                 HHHHHEEEEEEEEEEEE...........CTTSSECCCESBTGGGHSEEEET CS
   CoA_trans 178 aiaeaakvtileveeiv...........ekgkldpekvliPgvlvdavvea 217
                 ++a +ak ti+e eeiv           ++g+l+p+++++Pgv+vd++v+a
  CDO72897.1 238 VMARNAKLTIVEAEEIVyxxxxxxxlctPVGSLSPNAIHVPGVYVDRIVKA 288
                 6677*********************************************86 PP

  == domain 2  score: 135.0 bits;  conditional E-value: 2.6e-43
                 HHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtla 101
                 ++a+++a+ei dG +v++G    +giP +li + ++   + ++ + se+g+lg+gp++ + +v+++i+++g+et +   g++ ++++++f  +++g+++
  CDO72897.1 326 RIAKRAAREIGDGFYVNLG----VGIP-TLIPEHLDP--SVKVWLESENGILGMGPYPTPDQVDADIINAGKETTTLLPGASCFDSAESFN-MIRGGHM 416
                 68899999***********....****.********9..9***************************************************.******* PP

                 HHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEES.SSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 102 erlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepa.lkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 +++ +G++++++ g+++n +i+    +k   v+g+gGa+++++++ +++++++++++ +d+++++v e+s++ +++ a++   +vt+++v+++++ +  
  CDO72897.1 417 DVTCLGAMQVSQAGDIANFMIP----GK--LVKGIGGAMDLVSNPdKTKVIVTMQHVSKDGAPKVVKECSLPLTGARAVS--LIVTDMAVFKVDRAAGT 507
                 **********************....77..9**********99874789**************************99999..9**************** PP

                 ECCCESBTGGGHSEE CS
   CoA_trans 200 dpekvliPgvlvdav 214
                 + ++ + +gv+ d++
  CDO72897.1 508 LLLTDIAEGVSLDEL 522
                 *********999986 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   9.4e-06     0.084      40     121 ..     422     496 ..     403     513 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.4e-06
                      E-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSECE-TTT-SEEEETT CS
  AcetylCoA_hyd_C  40 salevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvtttrhdvdyvvTEy 121
                       a++v   G ++  ++ g+ v G+Gg +d v++  +    k i++++ ++k+g   ++v  ++      t    v+++vT+ 
       CDO72897.1 422 GAMQVSQAGDIANFMIPGKLVKGIGGAMDLVSNPDK---TKVIVTMQHVSKDGA-PKVVKECS---LPLTGARAVSLIVTDM 496
                      68999999***9999*****************9988...899*****9999997.99999998...4444555588888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 3231.47
//
Query:       CDO72898.1  [L=661]
Description: hypothetical protein BN946_scf185002.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-18   65.2   0.0    1.4e-17   64.3   0.0    1.4  1  SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)


Domain annotation for each model (and alignments):
>> SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0     8e-22   1.4e-17       4     107 ..     131     248 ..     128     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 8e-22
                 HHHHHHHHHHHTS---HHHHHHHHHHTSEEEEETT...SEEETTEEEEEE-THHHHS..................HHHCCCHHH.HHHCHHCCSSTTEE CS
   SMI1_KNR4   4 eedlqefekdlgikLPndyreflkltnGgelfges...nglifglkllsldeieeereesrsss...........eeladdkek.kkiprqralphgwi 87 
                 ++dl+++e  +g++LP  +re+++ ++G+e++ +    +gl+fgl+ll+l+++ ee++  r+             +e    ++  +++ r+ +  +gwi
  CDO72898.1 131 PQDLAQIEMAFGFSLPAPVRESYLCVDGQEPESSAgcsEGLFFGLTLLPLEDVLEEWRFWREVDddpatganpalRE--LMQSIpPGWVRREYSCRGWI 227
                 68**************************9999999999**************8888877777777778888775422..22333467999999999*** PP

                 EEEEETTCEEEECEEEE.TTT CS
   SMI1_KNR4  88 pfatdgggnyicidlsp.qge 107
                 p++ d +gny++id +p +g 
  CDO72898.1 228 PLVADKAGNYLGIDMNPgEGG 248
                 *****************6444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4327.53
//
Query:       CDO72899.1  [L=1341]
Description: hypothetical protein BN946_scf185002.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-14   51.9   0.7      7e-14   51.9   0.7    2.8  3  HSA              HSA
    1.8e-10   40.9   0.4    4.6e-10   39.6   0.4    1.7  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
    6.8e-09   35.8   0.6    1.7e-08   34.5   0.6    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.8         3   1.8e+04      57      66 ..     359     368 ..     355     374 .. 0.48
   2 !   51.9   0.7   1.2e-17     7e-14       9      55 ..     452     498 ..     450     502 .. 0.93
   3 ?   -6.0   3.1         3   1.8e+04      33      33 ..    1301    1301 ..    1283    1326 .. 0.45

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 3
                 XXXXXXXXXX CS
         HSA  57 kriereeker 66 
                 kr++++ ker
  CDO72899.1 359 KRERKRDKER 368
                 3333333333 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 1.2e-17
                 X--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXX CS
         HSA   9 kthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekee 55 
                 kth+dylL+e++w+++df+eer++k a a +l +av+ +h+ +  ee
  CDO72899.1 452 KTHWDYLLDEMKWMRTDFREERRWKLALAFTLVHAVMEWHEAGSLEE 498
                 9***************************************9876665 PP

  == domain 3  score: -6.0 bits;  conditional E-value: 3
                  H CS
         HSA   33 k 33  
                  +
  CDO72899.1 1301 Q 1301
                  2 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.4   7.6e-14   4.6e-10       1      42 [.     878     928 ..     878     940 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 7.6e-14
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn.........rRtpkqcfdrwknk 42 
                     Wt++Ed +L + veky  +W++Iaea+n         +Rt+++c +rw+++
      CDO72899.1 878 WTPAEDALLKQMVEKYPHNWNLIAEAFNsarvtistdKRTAWDCLERWRER 928
                     ***************************99*******************994 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.6   2.8e-12   1.7e-08       2      43 ..     876     926 ..     875     928 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.8e-12
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTS.........S-HHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlgg.........Rtekqcrsrwr 43 
                      ++Wt+ Ed lL + v+k+  +W++Iae +++         Rt+ +c +rwr
       CDO72899.1 876 MAWTPAEDALLKQMVEKYPHNWNLIAEAFNSarvtistdkRTAWDCLERWR 926
                      79*************************9997788899999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2197  (0.122539); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.34u 0.37s 00:00:01.71 Elapsed: 00:00:00.57
# Mc/sec: 7068.82
//
Query:       CDO72900.1  [L=120]
Description: hypothetical protein BN946_scf185002.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 819.32
//
Query:       CDO72901.1  [L=620]
Description: hypothetical protein BN946_scf185002.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   48.1   0.0    2.1e-12   47.1   0.0    1.4  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
      0.024   13.0   1.6      0.023   13.1   0.7    1.3  1  DUF515     Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.3e-16   2.1e-12      18     210 ..     307     505 ..     290     557 .. 0.71

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 2.3e-16
                 SCGGSHHHHHHHHHHHT-SEEEEEEE.CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS....TTT.........CSSSSTTTTHHH.. CS
   Cellulase  18 gnpyttkalidevkdagfntvRlpvs.wgelvenapdykvdenslerveevvkyakenglyvildiHse....egw.........ltkadgnssedt.. 100
                 ++++ t++ ++e+++ag n+vR+p+  w   v +++ +   +++   + ++v++a + gl++ ld+Hs     +gw                       
  CDO72901.1 307 YKTFVTEQDFAEIAAAGLNFVRIPIPyWAIEVRENEPF-LPKTQWTYFLKAVQWARKYGLRINLDLHSLpgsqNGWnhsgrlgqiN----------Vll 394
                 566789999****************7588888888888.677778899999*****************999987774444444440..........144 PP

                 ..........HHHHHHHHHHHHH.HHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS......SEEEEECHHHHTBHHHH CS
   Cellulase 101 ..........aeeffkklwtqiA.erykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn......rliivegnswsgnldga 182
                           + +++  + + i+ ++y  +d + +f + NEP+g +    +    +d++++y+ +a++++R++ ++      ++++ +   + g  +  
  CDO72901.1 395 gpmgianaerSLDYIRIIAEFISqDEY--KDVIPLFGITNEPFGPTI---G----QDAIQRYYVQAYNVVRNASGTgeghgpWIVFHDA--FFGLKQW- 481
                 444444321133333333333331344..444568*********433...3....89****************9999999978887777..6666665. PP

                 HCTSGSSSSTTEEEEEEEETTTHHHTGC CS
   Cellulase 183 vlndPndsqdnliysvHfYgpsdfaqte 210
                 +   Pn+  d++  ++H+Y    f++++
  CDO72901.1 482 AGFLPNA--DRTQLDIHQYLC--FSGQS 505
                 4458976..999999999983..33333 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   2.6e-06     0.023      21      54 ..     135     169 ..     119     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-06
      DUF515  21 sslrekerrkrliiGasv.lvvivillvfaiYsyi 54 
                  + r+++rrk+++iG+ v l vi+ ++v+++Y+ +
  CDO72901.1 135 YTARPRSRRKAIVIGSLVaLAVIIAAVVLGVYFAV 169
                 3779***********9664899999*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4455.94
//
Query:       CDO72902.1  [L=768]
Description: Glycoside Hydrolase Family 55 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-90  301.9  14.5    3.5e-75  252.5   8.6    2.9  2  Pectate_lyase_3  Pectate lyase superfamily protein
    6.5e-07   28.9   0.6     0.0073   16.0   0.1    2.7  2  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.5   8.6   3.9e-79   3.5e-75       1     213 [.      65     297 ..      65     299 .. 0.94
   2 !   51.9   0.3   9.6e-18   8.6e-14       1      73 [.     412     479 ..     412     530 .. 0.83

  Alignments for each domain:
  == domain 1  score: 252.5 bits;  conditional E-value: 3.9e-79
                      SEEGGGGT---EEEEE-HHHHHHHH.......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TT..T-... CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkais.casatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyv..sggs. 90 
                      frnVkd+GakgDGvtDdtaai+     c+s+ttt+avV+fP+GtY vsspii ++++qL+Gd++++p+l a a f+g+++i + p +  +  s 
       CDO72902.1  65 FRNVKDFGAKGDGVTDDTAAIKCGGGtCDSSTTTPAVVFFPQGTYKVSSPIIAYYYTQLIGDARNPPILLADATFTGMAVIAQVPLMasT-SSl 157
                      8*******************9977635******************************************************999999642.224 PP

                      ...............-EEEEEEEEEEEGGGG-SS---S..SEEEES-EEEEEEEEEEES-SSEEE-SSS---TT---SS--EEEEES-EEES-S CS
  Pectate_lyase_3  91 ...............ealiatnnfyrqirnlkiditav..apgatgihwqtaqatslenvefemseasgtkhqgifiengsggflndlvfsglg 167
                                     ++++++nnf+r++rn++id +++  + +atgihwq++qatsl n++f+ms+a+g+ hqgi +engsggf+ dlvf+g g
       CDO72902.1 158 pgadadpyipngggaQWYVNQNNFFRSVRNFIIDLRQMpaSASATGIHWQVSQATSLMNIVFQMSTAAGNAHQGIWMENGSGGFMGDLVFNG-G 250
                      4558899999999*************************655555************************************************.* PP

                      S-SEEES-EEEEEES-EEE-S--SEEE-TT-EEEEEEEEEESSSE.E CS
  Pectate_lyase_3 168 digiavgnqqftvrnitfnnattgievlwgwgwtlknvkinnceg.G 213
                      ++g+ vgnqqftvrnit+nna t+++  w+wgwt+++v+innc++ G
       CDO72902.1 251 KYGLWVGNQQFTVRNITVNNADTAVYSIWNWGWTFQGVTINNCQTvG 297
                      *******************************************9977 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 9.6e-18
                      SEEGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaa 73 
                      f++V+d GakgDG tDdtaa+q++    ++ ++ +++++ aGtYlvs+++ ++ g+q vG++   +v+ ++++
       CDO72902.1 412 FVSVRDQGAKGDGTTDDTAALQAVF---DKFSGCKIIFIDAGTYLVSNTLTIPAGTQVVGEA--WSVILGSGS 479
                      79***********************...9999*****************************9..444444433 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   3.8e-05      0.34       1      14 [.      73      86 ..      73     119 .. 0.76
   2 !   16.0   0.1   8.1e-07    0.0073       1      37 [.     420     456 ..     420     461 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.8e-05
                    ---EEEEE-HHHHH CS
  End_N_terminal  1 akGDGvtdDtdals 14
                    akGDGvtdDt+a++
      CDO72902.1 73 AKGDGVTDDTAAIK 86
                    89**********97 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.1e-07
                     ---EEEEE-HHHHHHHHHHS-TTS-EE-TT-EEEESS CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaapvgkkidGrGltykvss 37 
                     akGDG tdDt+al++v+ + ++ k+i     ty vs+
      CDO72902.1 420 AKGDGTTDDTAALQAVFDKFSGCKIIFIDAGTYLVSN 456
                     89*****************999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5412.02
//
Query:       CDO72903.1  [L=682]
Description: hypothetical protein BN946_scf185002.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0011   18.8   2.9     0.0018   18.0   2.9    1.3  1  zf-CCCH_4        CCCH-type zinc finger
      0.008   16.4   1.1      0.008   16.4   1.1    3.4  4  Fib_alpha        Fibrinogen alpha/beta chain family
  ------ inclusion threshold ------
       0.03   13.7   0.3       0.03   13.7   0.3    2.0  2  DctP             Bacterial extracellular solute-binding prote
      0.051   14.1   0.8      0.089   13.3   0.8    1.3  1  zf-CCCH_2        RNA-binding, Nab2-type zinc finger
      0.052   13.5   0.3       0.13   12.2   0.3    1.6  1  Ins_allergen_rp  Insect allergen related repeat, nitrile-spec
       0.17   10.9   0.0       0.36    9.9   0.0    1.5  1  DUF3095          Protein of unknown function (DUF3095)
       0.67    9.9   4.3       0.15   12.0   1.0    1.6  2  zf-CCCH          Zinc finger C-x8-C-x5-C-x3-H type (and simil
       0.73    8.4   6.5       0.23   10.0   1.5    2.2  2  FapA             Flagellar Assembly Protein A
       0.79    9.5  13.2        2.4    7.9   0.7    2.9  3  Lectin_N         Hepatic lectin, N-terminal domain
       0.95    8.4  10.9       0.63    8.9   3.3    2.5  2  IFT57            Intra-flagellar transport protein 57
       0.97    9.6   2.7        1.6    8.9   2.7    1.3  1  zf_CCCH_4        Zinc finger domain
       0.98    9.0   9.1       0.29   10.7   2.0    2.5  2  Phage_GPO        Phage capsid scaffolding protein (GPO) serin
        1.4    9.2  27.2       0.21   11.9  10.2    3.9  4  OmpH             Outer membrane protein (OmpH-like)
        1.5    8.9   6.1       0.14   12.2   0.7    2.1  2  Vma12            Endoplasmic reticulum-based factor for assem
        1.7    8.0   4.1          4    6.8   3.2    2.1  2  ZnuA             Zinc-uptake complex component A periplasmic
        4.4    8.0  13.7        0.6   10.8   5.8    3.2  3  YabA             Initiation control protein YabA
        8.3    6.5   9.1         14    5.8   0.2    4.0  5  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP


Domain annotation for each model (and alignments):
>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.9   1.7e-06    0.0018       9      22 .]      29      42 ..      27      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-06
   zf-CCCH_4  9 GsCrfGdnCrFsHd 22
                ++C+ Gd+CrF+H+
  CDO72903.1 29 EGCYNGDKCRFAHP 42
                69***********7 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   2.2       1.9     2e+03      62      87 ..     307     332 ..     266     378 .. 0.43
   2 ?    1.1   0.1      0.39   4.1e+02      26      53 ..     354     381 ..     351     387 .. 0.82
   3 !   16.4   1.1   7.6e-06     0.008      30     112 ..     484     569 ..     482     575 .. 0.87
   4 ?   -2.5   0.0       4.9   5.2e+03      36      48 ..     609     621 ..     591     639 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  62 kdslrekqkskkdndnvikksskele 87 
                 kd+++++ ++ +++++ +++++ +l 
  CDO72903.1 307 KDIIASTSAKVQEKQQELNRIAAQLI 332
                 44444444444444444444433333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.39
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstke 53 
                 ++++ +++k+d++kl  +l+++++s+ +
  CDO72903.1 354 MTSVLETLKEDVQKLYTSLDTVQRSSGS 381
                 5666788999999999999999998865 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 7.6e-06
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvle 112
                 +++++ +++kl++e+++ + +  ea +   e++ + +++ k ++d    + +++k  +ele +++   +t+ aq +++r+L + + 
  CDO72903.1 484 DPELQARVQKLQEEFASTQARAAEAMKELDELQAYGESRDKMNADLqqkNDALRKELDELEARQSSTARTVEAQTKELRALHDAVT 569
                 567899*******************************999999885334677777778889999999**************99876 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.9
                 HHCCCCCCCCCCC CS
   Fib_alpha  36 dlekleneleeis 48 
                  l+++++++++  
  CDO72903.1 609 ILQEVRKHVQQQL 621
                 3333333333221 PP

>> DctP  Bacterial extracellular solute-binding protein, family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   2.9e-05      0.03     209     255 ..     288     334 ..     274     364 .. 0.84
   2 ?   -2.0   1.5       1.7   1.8e+03     229     276 ..     516     562 ..     495     576 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
                 EEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        DctP 209 vlvnkktwdsLpedlqaileeaakeatelqrklveeleeealqklke 255
                  l+ +++++sLpe+ +++l+++++ +++++ ++++el++ a q + e
  CDO72903.1 288 RLTRSAVYQSLPEEDRTALKDIIASTSAKVQEKQQELNRIAAQLIPE 334
                 5667899**********************************998877 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEGEHHHHHHHHHHHH CS
        DctP 229 eaakeatelqrklveeleeealqklkeagvevieltpedlaafrealk 276
                 +a  e++++++  ++++++ ++++l e      + t+   +a  ++l+
  CDO72903.1 516 QAYGESRDKMNADLQQKNDALRKELDELEARQ-SSTARTVEAQTKELR 562
                 67778888888888888988888888833333.233333333333333 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   8.4e-05     0.089       8      18 .]      31      42 ..      26      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.4e-05
   zf-CCCH_2  8 C.tnpkCpFaHP 18
                C  ++kC+FaHP
  CDO72903.1 31 CyNGDKCRFAHP 42
                999********9 PP

>> Ins_allergen_rp  Insect allergen related repeat, nitrile-specifier detoxification
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00013      0.13      28     123 ..     483     577 ..     479     583 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
  Ins_allergen_rp  28 tDaefqkavkflrssefkelvqqlealpevkellnyleqagldvyeilnvlndflkasgikelvpplvesaseskk.lgglrgfvqdllavlPr 120
                       D+e q+ v+ l+ + + + ++ +ea++e+ el  y e +  +++  l+  nd+l + +++el+  ++++a+ ++  ++ lr++ + + a+l r
       CDO72903.1 483 ADPELQARVQKLQEEFASTQARAAEAMKELDELQAYGE-SRDKMNADLQQKNDAL-RKELDELEARQSSTARTVEAqTKELRALHDAVTAYLSR 574
                      69************************************.555667889999***9.8899999998877333333369******9999999998 PP

  Ins_allergen_rp 121 dki 123
                       ++
       CDO72903.1 575 PQV 577
                      876 PP

>> DUF3095  Protein of unknown function (DUF3095)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00034      0.36       8      57 ..     283     332 ..     277     334 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
     DUF3095   8 lsefeeitdeelyrpvpddWlivvtDivdSTkaiaegrykdVNlvgaavi 57 
                 l+++e++t +++y+++p++   ++ Di  ST+a  + ++++ N ++a  i
  CDO72903.1 283 LQKYERLTRSAVYQSLPEEDRTALKDIIASTSAKVQEKQQELNRIAAQLI 332
                 6888999***************************************9877 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       7.6   8.1e+03       2      12 ..       7      17 ..       7      19 .. 0.71
   2 ?   12.0   1.0   0.00015      0.15      15      27 .]      31      43 ..      27      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.6
                HCHCBCHHHHH CS
     zf-CCCH  2 ktelCrffmrt 12
                k+++C+ ++ +
  CDO72903.1  7 KRRRCHWYNDN 17
                79999966655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00015
                -TTGGG-SSBSCS CS
     zf-CCCH 15 CkyGdrCkFaHgq 27
                C  Gd+C+FaH++
  CDO72903.1 31 CYNGDKCRFAHPE 43
                779********96 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3      0.14   1.5e+02     338     408 ..     302     372 ..     260     413 .. 0.59
   2 ?   10.0   1.5   0.00022      0.23     330     411 ..     483     557 ..     428     576 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
        FapA 338 klkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeel 408
                  +++l++ + ++ +++++ +++++++ +  +++++ +     +++    + ++++ le l+e+ ++l  +l
  CDO72903.1 302 DRTALKDIIASTSAKVQEKQQELNRIAAQLIPEDFWPSVVTAQQRSDPGYHQMTSVLETLKEDVQKLYTSL 372
                 22344444444444444444444444443334455555555555555555555555555555555555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00022
        FapA 330 ldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                  d pel++++++l+ee  +++++  +  k++++l++ ++       + ++ + l+++  +l++el ele+++ +    +e +
  CDO72903.1 483 AD-PELQARVQKLQEEFASTQARAAEAMKELDELQAYGE------SRDKMNADLQQKNDALRKELDELEARQSSTARTVEAQ 557
                 46.999999999999999999999999999999999554......3346666666666666666666666666666665555 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.7    0.0023       2.4      52     110 ..     271     331 ..     266     334 .. 0.78
   2 ?   -2.6   0.0       3.9   4.2e+03      52      67 ..     353     368 ..     340     385 .. 0.61
   3 ?    7.3   3.3    0.0036       3.8      53     125 ..     487     565 ..     483     570 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0023
    Lectin_N  52 qLqreLetLketfsnfssstlaei.qalssq.ggslsekvtsleaklekkqqdlkadhsel 110
                 + +++L  L+e+++     t + + q+l  +    l++ ++s +ak+++kqq+l+   ++l
  CDO72903.1 271 RARSQLLRLQEDLQKYERLTRSAVyQSLPEEdRTALKDIIASTSAKVQEKQQELNRIAAQL 331
                 567788888999988888887766256666635678999***************9888877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
    Lectin_N  52 qLqreLetLketfsnf 67 
                 q+ + LetLke+++ +
  CDO72903.1 353 QMTSVLETLKEDVQKL 368
                 4445555555554443 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0036
    Lectin_N  53 LqreLetLketfsnfssst...laeiqalss...qggslsekvtsleaklekkqqdlkadhselllhvkqlvkdLrtLs 125
                 Lq  ++ L+e+f  + ++    + e+ +l++     ++++  ++  +  l+k+  +l+a +s+    v   +k+Lr+L+
  CDO72903.1 487 LQARVQKLQEEFASTQARAaeaMKELDELQAygeSRDKMNADLQQKNDALRKELDELEARQSSTARTVEAQTKELRALH 565
                 677777777777666544300033444444422256667777778888899*************************997 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.9     0.031        33     170     248 ..     290     373 ..     234     383 .. 0.50
   2 ?    8.9   3.3    0.0006      0.63     268     338 ..     487     557 ..     482     568 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.031
       IFT57 170 eelklesekkeekekekeeeiieskvdaaeWklEleRvlpqLkv.......tikadakdWrahleqmkkhkksieeslpetksqlk 248
                 ++  + ++  ee++   ++ i++++   +e ++El+R++ qL          ++++  d      qm ++ ++++e+++++ ++l+
  CDO72903.1 290 TRSAVYQSLPEEDRTALKDIIASTSAKVQEKQQELNRIAAQLIPedfwpsvVTAQQRSD--PGYHQMTSVLETLKEDVQKLYTSLD 373
                 33333333333344444555555566678888888888888866666665322222222..2233444444444444444444444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0006
       IFT57 268 lnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvkik 338
                 l+ ++++l +e+ ++q++ +e+ +++++l++  +++ +  a+++++ +++ +e++e +++ + ++  v+ +
  CDO72903.1 487 LQARVQKLQEEFASTQARAAEAMKELDELQAYGESRDKMNADLQQKNDALRKELDELEARQSSTARTVEAQ 557
                 677899999*************************************************9999888776654 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7    0.0015       1.6      11      19 .]      33      41 ..      30      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
   zf_CCCH_4 11 kGdkCrFaH 19
                +GdkCrFaH
  CDO72903.1 33 NGDKCRFAH 41
                8******** PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.8      0.14   1.5e+02     191     253 ..     312     377 ..     268     393 .. 0.60
   2 ?   10.7   2.0   0.00028      0.29     174     258 ..     463     550 ..     419     563 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.14
   Phage_GPO 191 sddarfadveeavelvAeev...kelsekveallaleaelaalkkeveklkaeleaLkekLsktda 253
                 s++a++++ ++ ++++A+++       + v+a+++++   +++++ +e+lk+++++L ++L++ ++
  CDO72903.1 312 STSAKVQEKQQELNRIAAQLipeDFWPSVVTAQQRSDPGYHQMTSVLETLKEDVQKLYTSLDTVQR 377
                 445555555555566655553322222333333344455555666666666666666666665544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00028
   Phage_GPO 174 geslferikallskkkksd...darfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqr 258
                 +++l +r+  l  + k++     +  a v++  e++A+++++++e++++l +l+a  ++ +k  ++l+++ +aL+++L++ +a++++ 
  CDO72903.1 463 ESELGHRLSGLQIGGKEDMpadPELQARVQKLQEEFASTQARAAEAMKELDELQAYGESRDKMNADLQQKNDALRKELDELEARQSST 550
                 556666666654433333322245568999999***************9999999999999999999999999999999988844332 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   5.7      0.46   4.8e+02      37      91 ..     278     332 ..     262     377 .. 0.57
   2 ?   -0.9   0.0       1.8   1.9e+03      20      51 ..     343     374 ..     335     408 .. 0.76
   3 ?   11.9  10.2    0.0002      0.21      15     101 ..     485     571 ..     480     579 .. 0.78
   4 ?    2.2   0.1       0.2   2.1e+02      65      98 ..     610     636 ..     584     646 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHTTTS.......-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  37 akekelqklqeelqkkakkle......keekeqelqkkeqelqqkqqqkaqelqkkqqell 91 
                 +++++lqk +e+l    +  +       ee++ +l++  +   +k q+k+qel++  ++l+
  CDO72903.1 278 RLQEDLQK-YERLT---R--SavyqslPEEDRTALKDIIASTSAKVQEKQQELNRIAAQLI 332
                 34444442.22222...1..12333444444444666666666655556666665555543 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  20 aqeqlekkfkklqaeleakekelqklqeelqk 51 
                 aq++ +  + ++   le++++++qkl++ l++
  CDO72903.1 343 AQQRSDPGYHQMTSVLETLKEDVQKLYTSLDT 374
                 55555555667778888888888888888864 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinka 101
                 pe +a  ++l+++f++ qa  ++  kel++lq+  + + k + + ++k  +l+k+ +el+++q+ +a+ ++++ +el++ + d +++ 
  CDO72903.1 485 PELQARVQKLQEEFASTQARAAEAMKELDELQAYGESRDKMNaDLQQKNDALRKELDELEARQSSTARTVEAQTKELRA-LHDAVTAY 571
                 6777888899999999999999888999888886665555544488888889999999999777777888888888777.77777665 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  65 lqkkeqelqqkqqqkaqelqkkqqellkpildki 98 
                 lq+ ++ +       +q+lq+++ ++   ++ ++
  CDO72903.1 610 LQEVRKHV-------QQQLQAQSDQVSGDLMTQM 636
                 33333333.......3444444444444444444 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   0.00013      0.14      10      72 ..     240     326 ..     234     360 .. 0.68
   2 ?   -2.5   0.5       4.5   4.7e+03      21      44 ..     485     511 ..     476     570 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
       Vma12  10 vppp.ppkpepspE................ykallarLraeqeereYkrlinsvdpsqksgktds.pss.......sddelt..aqelke 72 
                 +p p ppk+e + E                 +a+ + Lr +++ ++Y+rl++s+    +s  +++ ++        s  ++   +qel+ 
  CDO72903.1 240 MPAPsPPKKELTAEekrslwlrrvehlseaVRARSQLLRLQEDLQKYERLTRSAV--YQSLPEEDrTALkdiiastS-AKVQekQQELNR 326
                 455556777777777888888888888888***********************44..33333332122233333210.222233344444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.5
       Vma12  21 pEykallarLrae...qeereYkrlin 44 
                 pE++a++++L+ e    ++r+ +++ +
  CDO72903.1 485 PELQARVQKLQEEfasTQARAAEAMKE 511
                 555555555554411122333333322 PP

>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9     2e+03     123     140 ..     500     517 ..     483     521 .. 0.57
   2 ?    6.8   3.2    0.0038         4     119     175 ..     524     580 ..     504     636 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        ZnuA 123 tyeanaaayiekLeelda 140
                   +a+aa+  ++L+el+a
  CDO72903.1 500 STQARAAEAMKELDELQA 517
                 345666666666666655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0038
                 GGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 119 anadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylaraygleva 175
                 +  ++++++ +a+ ++L+el+a+  ++  +++++++ l   hda+  +  + +++ a
  CDO72903.1 524 KMNADLQQKNDALRKELDELEARQSSTARTVEAQTKELRALHDAVTAYLSRPQVQPA 580
                 4455689999**********************************9877666666655 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.1   5.4e+03      48      52 ..     306     310 ..     259     332 .. 0.48
   2 ?    0.3   0.0         1   1.1e+03       5      30 ..     353     378 ..     349     415 .. 0.79
   3 ?   10.8   5.8   0.00057       0.6       5      77 ..     493     565 ..     486     567 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.1
                 HHHHH CS
        YabA  48 lrerl 52 
                 l++ +
  CDO72903.1 306 LKDII 310
                 22222 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleeleelkee 30 
                 ++++ le+l+e++++l+++l++++++
  CDO72903.1 353 QMTSVLETLKEDVQKLYTSLDTVQRS 378
                 45666777777777777777777665 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLarlY 77 
                 +l +++++ + + +e ++el+el++  ++  + na+L+  n+ lr++l+e e++++++ ++++   ++L+ l+
  CDO72903.1 493 KLQEEFASTQARAAEAMKELDELQAYGESRDKMNADLQQKNDALRKELDELEARQSSTARTVEAQTKELRALH 565
                 5777888888899999999999999999999*****************9999999999999999999998886 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.9      0.42   4.5e+02      71      71 ..     353     353 ..     274     378 .. 0.53
   2 ?    0.5   0.1      0.54   5.7e+02      44      63 ..     355     374 ..     350     386 .. 0.58
   3 ?   -2.8   0.0       5.8   6.2e+03      56      87 ..     435     466 ..     430     468 .. 0.72
   4 ?    5.8   0.2     0.013        14      36      94 ..     487     547 ..     483     582 .. 0.71
   5 ?    2.0   0.0      0.18   1.9e+02      17      49 ..     605     634 ..     590     655 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.42
  Baculo_PEP_C  71 n 71 
                   +
    CDO72903.1 353 Q 353
                   2 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.54
  Baculo_PEP_C  44 etqLnalsedlksllaeldt 63 
                    ++L++l+ed+++l ++ldt
    CDO72903.1 355 TSVLETLKEDVQKLYTSLDT 374
                   44555555555555555554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.8
  Baculo_PEP_C  56 sllaeldtrldtlltnLtdalnalqdtlrneL 87 
                   + la+ld r+ +l + L +  ++++d++++eL
    CDO72903.1 435 DRLAALDYRIVELRNDLLQYDKRVEDEVESEL 466
                   55677788888888888888888888887776 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.013
  Baculo_PEP_C  36 latlldaietqLnalsedlksllaeldt..rldtlltnLtdalnalqdtlrneLtnlnsil 94 
                   l++ ++++++++ + +++  ++++eld+  +  ++ +++++ l++ +d+lr+eL+ l++  
    CDO72903.1 487 LQARVQKLQEEFASTQARAAEAMKELDElqAYGESRDKMNADLQQKNDALRKELDELEARQ 547
                   6667777777777777777777777776667777888888888888888888888887654 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.18
  Baculo_PEP_C  17 dLtnvLnairlqnvqilaqlatlldaietqLna 49 
                   dL ++L+ +r     +  ql+++ d++ + L +
    CDO72903.1 605 DLAPILQEVRK---HVQQQLQAQSDQVSGDLMT 634
                   67777777743...3444555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 4224.74
//
Query:       CDO72904.1  [L=166]
Description: hypothetical protein BN946_scf185002.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-06   26.7   0.0    9.7e-06   26.1   0.0    1.3  1  ABC_tran  ABC transporter
     0.0056   16.1   0.0     0.0064   16.0   0.0    1.1  1  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.028   14.6   0.0       0.51   10.6   0.0    2.3  1  SbcCD_C   Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.6e-09   9.7e-06      90     136 ..      56     103 ..       9     104 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.6e-09
                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHH.HHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalaral.lkkpkllllDEpt 136
                    +  +++ + +++s ++LSgG+ qr++la a+ l  +++lllDEp+
  CDO72904.1  56 GVAESWGIQPELWDRSWANLSGGEAQRIVLAIAVgLDTAEVLLLDEPS 103
                 33333346667777777**************99858899********7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.1e-06    0.0064     113     204 ..      22     144 ..      11     158 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-06
                 ETTEEE-HHHHHHHH.HCTT-STT............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsell.esagiske............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvael 182
                 + +++  k+ v++ l es g+ ++                            +LSgGe + + la+ + +   + a + llDe  +aLD +  +kv + 
  CDO72904.1  22 VHKHTSAKASVARNLsESFGLGPSepvmdtheafgvaeswgiqpelwdrswaNLSGGEAQRIVLAIAVGL---DTAEVLLLDEPSSALDSETSSKVEKH 117
                 55555555555544413455655566666666666666677777788888889*****999988888665...566789************99998877 PP

                 HH.....HHCTTSEEEEE-SSHHHCCC CS
                 xx.....xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 183 lk.....eksknaQfivislreemlek 204
                 l      ++sk   +i i+++ e+ ++
  CDO72904.1 118 LVaevksSDSKLKAIIWITHSPEQGQR 144
                 652211122333455667777766555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.6e-05      0.51      26      83 ..      68     113 ..      51     120 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.6e-05
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 ++rs ++lSGGe+q +  la+a +l            + ++++LDE  s lD+e++++
  CDO72904.1  68 WDRSWANLSGGEAQRI-VLAIAVGLD-----------TAEVLLLDEPSSALDSETSSK 113
                 789999*******554.444554432...........346778888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1245.93
//
Query:       CDO72905.1  [L=364]
Description: hypothetical protein BN946_scf185002.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-81  273.4   2.4    2.4e-81  273.2   2.4    1.0  1  Porin_3   Eukaryotic porin


Domain annotation for each model (and alignments):
>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.2   2.4   1.3e-85   2.4e-81       1     270 []      52     333 ..      52     333 .. 0.97

  Alignments for each domain:
  == domain 1  score: 273.2 bits;  conditional E-value: 1.3e-85
                 S---CCCCCHHHHHHHHCCHTTTECEEEEEEEECCECCEEEEEEEETTTS..-ECEEEEEEEEE..TCCCEEEEEECCCSCCEEEEEECCSSTTCEEEE CS
     Porin_3   1 nPgtyedlgkeakdllpkdYhfeglkldvtkktslgvaFqvshsfslgsg..kvsysfeakykd..kgltltlkgntdndlsltarvneqlaeglklkl 95 
                 nPgt+e+l+ke k+  +++Y f+g+++d++k  s+++ Fqv+h f lgs+  +++y+f+a++++    +tl++ gn+d+d++l+ar+n+ +++   +k+
  CDO72905.1  52 NPGTVENLTKESKQTHLNNYAFDGARADLSKSLSMNPMFQVTHAFHLGSQtaPPTYHFGAMFANdkVLDTLFMHGNVDHDGNLSARFNQGWSATNVSKI 150
                 8**************************************************************888788999*************************** PP

                 EEEE-TTT--EEEEEEEEEEETTEEEEEEEEC.TC...EEEEEEEEEEECTSTEEEEEEEEEECTTTCCEEEEEEEEEEEC......SEEEEEEEEETT CS
     Porin_3  96 saqltpekgkksakleldykgddftaslklgn.sk...tpvvvasllqsvtpglalGaeavydtasgkltkyaaalsyaar......dwiaslqllnng 184
                 +aql+ ++g++ +++e+d++g+d+++++k+ n s    ++++++s+lqsvt++la+G+e++ ++++  ++  +++l+y a+      +wia++q+ ++ 
  CDO72905.1 151 QAQLSTTPGQSYVQMEHDFQGSDYSLNAKAVNpSPadlSGIYMGSYLQSVTKNLAVGVETILQRQA--PGLSDLGLAYLAKytgsdrNWIATAQV-QAP 246
                 ********************************777******************************8..6666**********************8.89* PP

                 TEEEEEEEEECCTTEEEEEEEEEETTEE..EEEEEEEEEEEECTCEEEEEEEECTTEEEEEEEEEECTTEEEEEEEEEECCCTEEEEE CS
     Porin_3 185 galtasyyqkvsekvevgaeltlnassq..estttlGakydldksttvkakidsngkvgllleqkLrpgvtltlsaelDhkknahkfG 270
                 g l+asy+qk+sekv+v+ael+  a ++  ++ +tl+a+y+l+++  ++a++ds+gkv+++leq++ p++ +++s+e+Dh+kna+k+G
  CDO72905.1 247 GILQASYWQKLSEKVDVAAELQVMAAPGrrDALATLAARYELRMA-SFRAQLDSTGKVSAYLEQRFAPTFAFLVSGEIDHFKNAAKVG 333
                 **********************9999888899*************.*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2328.07
//
Query:       CDO72906.1  [L=645]
Description: hypothetical protein BN946_scf185002.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-264  878.8   2.3   1.7e-264  878.6   2.3    1.0  1  HSP70           Hsp70 protein
    2.3e-16   59.5   0.1    3.8e-15   55.5   0.0    2.1  2  MreB_Mbl        MreB/Mbl protein
     0.0029   17.4   0.0     0.0077   16.0   0.0    1.7  2  FGGY_C          FGGY family of carbohydrate kinases, C-termin
  ------ inclusion threshold ------
      0.021   14.1   0.2      0.053   12.8   0.2    1.7  1  Hydantoinase_A  Hydantoinase/oxoprolinase
        3.2    6.3   5.2         20    3.6   3.0    2.1  2  SWI-SNF_Ssr4    Fungal domain of unknown function (DUF1750)


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  878.6   2.3  4.8e-268  1.7e-264       1     598 [.       4     609 ..       4     610 .. 0.98

  Alignments for each domain:
  == domain 1  score: 878.6 bits;  conditional E-value: 4.8e-268
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 ++GiDLGtt+s+v+v++++++e+ian++gnrttPs+vaFt++erl+G+aAk+q+++np+ntvf++KrliGrkfsdpevq++ik++p++v  k +gk+++
  CDO72906.1   4 AVGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFSDPEVQADIKHFPFTVFDK-EGKPYI 101
                 59***************************************************************************************999.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEEEEXS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvyDlGg 195
                 +v++ ge  +f+pe+is+mvL+k+ke+ae+ylg +v+ avitvPaYfnd+qRqatkdAg+iAGLnvlRi+NepTAaa+aYGldkk   ernvl++DlGg
  CDO72906.1 102 RVQYRGEpkEFSPEEISSMVLTKMKEIAESYLGGTVSSAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKAqGERNVLIFDLGG 200
                 *******99**************************************************************************99869*********** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                 gtfdvS+l++e+G+fevkaTagDthlGGedfD++lv+h+v+efk+k++ dls++ +al+rl++a+e+aK++LSs  ++++++ei+++ e g d+ ++++
  CDO72906.1 201 GTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVNEFKRKYKKDLSTNARALRRLRTACERAKRTLSS--AAQTTIEIDSLYE-GIDFYTSIT 296
                 **************************************************************************..677778899***9.********* PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSHCCEEEEBE CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevkdllllDvt 390
                 Ra+feel++dl++ tlepvek+l+dak++k++++++vlvGGstRiP++ +lv+++f+ kep+k++npDeava+GAAvqa++l+g+  e+++dllllDv 
  CDO72906.1 297 RARFEELCQDLFRSTLEPVEKVLRDAKIDKSQVHDIVLVGGSTRIPRIVKLVSDFFNgKEPNKSINPDEAVAYGAAVQAAILTGDtsEKTQDLLLLDVA 395
                 ********************************************************99**************************977899********* PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pLslgiet+ggvmt li+rntt+ptkks++fst++dnq+ v i+v++ger+ +kdn+llg+fel+gippaprGvpqieVtfdidanGil+vsa dk+tg
  CDO72906.1 396 PLSLGIETAGGVMTPLIKRNTTVPTKKSEIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSASDKTTG 494
                 *************************************************************************************************** PP

                 CEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHH CS
       HSP70 490 keeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek....ekvesaieeLkeeleeeekeeiea 581
                 k+++iti++++g ls+eeie+mv++ae++++ed++++++i a+n +e+++y+l+++l+++  a k ++ +k    ++v+++i++L+++ +e++kee+e+
  CDO72906.1 495 KSNRITITNDKGrLSKEEIERMVSEAEKYKAEDEAAAARITARNALESYAYNLRNSLNDDklAGKFEAGDKkkleDAVNDTISWLDAS-SEASKEEYEE 592
                 ************9*********************************************9989777777666578888999999**999.58889***** PP

                 HHHHHHHHHHHHHHHHH CS
       HSP70 582 kteelkkvvekiaekly 598
                 +++el++v+++i++kly
  CDO72906.1 593 HQKELEAVASPIMQKLY 609
                 **************998 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.024        87       2      35 ..       3      45 ..       2      66 .. 0.54
   2 !   55.5   0.0   1.1e-18   3.8e-15      92     316 ..     136     372 ..     114     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.024
                SEEEEEE-SSEEEE..EETTTEEEE.EE......ES-EEEETT CS
    MreB_Mbl  2 kdlgiDLGtantlv..yvkgkgivl.ne......psvvAikkk 35
                k +giDLGt+   v  +++++  ++ n+      ps vA++ +
  CDO72906.1  3 KAVGIDLGTTYSCVgvWQNDRVEIIaNDqgnrttPSYVAFTDT 45
                679*******998743555554333132222222566665544 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 1.1e-18
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS..SS-EEEEEE-SS-EEEEEEETT.EEEEEEE....ES-SHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpvee..psgnmvvdiGggttevavislg.givtsks....vrvaGdeldea 183
                 + ++ vi+vP   ++ +r+A k+a + aG +   +i+ep aAAi  gl+ ++   +  ++ d+Gggt +v+++++  gi + k+     +++G+++d+ 
  CDO72906.1 136 TVSSAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKAqgERNVLIFDLGGGTFDVSLLTIEeGIFEVKAtagdTHLGGEDFDNR 234
                 567899**************************************99999543114556999*************96367655542222689******** PP

                 HHHHH....HHHHS..EE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
    MreB_Mbl 184 iikyi....rkkyn..lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdr 275
                 ++++     ++ky+  l    r  ++++++   a+ + ++  +++i+   l +g+   ++++ ++ +e  ++ +++ +e v++vL++++ + +  +  +
  CDO72906.1 235 LVNHFvnefKRKYKkdLSTNARALRRLRTACERAKRTLSSAaQTTIEIDSLYEGIDFYTSITRARFEELCQDLFRSTLEPVEKVLRDAKIDKS-QV--H 330
                 998752333677762355556667788888888877766667999999***************************************999865.44..5 PP

                 -EEEESGGGGSBTHHHHHHHHHSS-.EEE-SSTTTHHHHHHH CS
    MreB_Mbl 276 givltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316
                  ivl+GG++ +  + kl+s+ ++ +  + + +p ++va G++
  CDO72906.1 331 DIVLVGGSTRIPRIVKLVSDFFNGKePNKSINPDEAVAYGAA 372
                 69*****************99875514667788888888876 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.2e-06    0.0077     136     196 ..     297     377 ..     257     379 .. 0.77
   2 ?   -3.0   0.0       1.4   5.2e+03     123     139 ..     535     551 ..     525     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.2e-06
      FGGY_C 136 railealekd..................sgkpldrlavdGGgskndllmqllAdilg..vpVerpktaeatalGaAilAav 196
                 ra+ e+l +d                  +++++  ++++GG ++ + +++l  d ++   p +   ++ea+a GaA+ Aa+
  CDO72906.1 297 RARFEELCQDlfrstlepvekvlrdakiDKSQVHDIVLVGGSTRIPRIVKLVSDFFNgkEPNKSINPDEAVAYGAAVQAAI 377
                 33444443334444444444457767777999**************************999999999************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
      FGGY_C 123 iarAaleavalqlrail 139
                  ar ale+ a+ lr+ l
  CDO72906.1 535 TARNALESYAYNLRNSL 551
                 58999*******99877 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.5e-05     0.053      55      99 ..     167     211 ..     119     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
  Hydantoinase_A  55 vetilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslikdg 99 
                     v  i+  P a ++++    k +ge++v+ fD+GG ++Dvsl+   
      CDO72906.1 167 VLRIINEPTAAAIAYGLDKKAQGERNVLIFDLGGGTFDVSLLTIE 211
                     5556667888888888779********************987643 PP

>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.012        44     308     379 ..     196     268 ..     191     282 .. 0.81
   2 ?    3.6   3.0    0.0056        20     359     440 ..     510     602 ..     483     612 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.012
  SWI-SNF_Ssr4 308 vdLgLGl.kGeLasLTeGifeaqleeakketpkkkyvgkldpekaeeFrkrvaekveetkaeieklkaeHakr 379
                    dLg G     L ++ eGife +++  +++   +   ++l +  ++eF+++ ++ ++++   + +l+   +++
    CDO72906.1 196 FDLGGGTfDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVNEFKRKYKKDLSTNARALRRLRTACERA 268
                   5666664144677788*****999888888889999*****************************99877665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0056
  SWI-SNF_Ssr4 359 aekveetkaeieklkaeHakrlaklkkssllkqaEkeLreavadpsetgs....eiwrlegrl.......deeeeeeseasveakkkvddiva 440
                   +e++e + +e ek kae + + a++++ ++l++   +Lr++ +d +  g+    +  +le+ +       d ++e+++e+ +e++k+++ + +
    CDO72906.1 510 KEEIERMVSEAEKYKAEDEAAAARITARNALESYAYNLRNSLNDDKLAGKfeagDKKKLEDAVndtiswlDASSEASKEEYEEHQKELEAVAS 602
                   589**************************************9997665543222567888888666666555555555555556666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4161.57
//
Query:       CDO72907.1  [L=643]
Description: hypothetical protein BN946_scf185002.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-88  295.1   1.6      1e-60  205.6   0.1    2.0  2  PhoD             PhoD-like phosphatase
    5.9e-22   78.0   0.0    1.3e-21   76.9   0.0    1.7  1  PhoD_N           PhoD-like phosphatase, N-terminal domain
     0.0045   17.5   0.1      0.013   16.1   0.0    1.9  2  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
  ------ inclusion threshold ------
      0.059   13.5   0.0       0.12   12.5   0.0    1.5  1  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.1   6.8e-29   3.1e-25       1      93 [.     210     296 ..     210     297 .. 0.95
   2 !  205.6   0.1   2.3e-64     1e-60      93     348 ..     314     595 ..     300     597 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 6.8e-29
        PhoD   1 lavvSCqnyeagyfnayrelaeeedlDlvlhlGDyiYeygpgeyaseaaelgreveppkeivtladYReryaqyktdadlqaahaaapfivvw 93 
                 +av+SC++y++gyfnay  +a++++ D+++hlGDyiYe        + a++gr++  + e+ t adYR r +qy+tda l aah +ap+i+vw
  CDO72907.1 210 FAVFSCSRYQDGYFNAYGVAAQNTSADIFVHLGDYIYESL-----GSGAKIGRKTLGR-ELATIADYRLRLNQYRTDAGLVAAHVKAPWITVW 296
                 89*************************************3.....3388999999999.*********************************9 PP

  == domain 2  score: 205.6 bits;  conditional E-value: 2.3e-64
        PhoD  93 wDDHEvaNnswsggaenhq........eetegdfekrkaaAlqAyfEwmPireakpgeeeriyrsfeyGdladlflLDtRqyrrdqavsye........ 175
                  DDHEva+ +w++g++n++        + + + f++rk aA++Ay+EwmPir+++p++++ri+r+fe+G+l+dl +LDtRqy+rd +  y         
  CDO72907.1 314 QDDHEVADQAWKAGTANSNdtslgcsfSPSGACFTDRKLAAVRAYHEWMPIRQVDPDDKLRIWRNFEIGKLLDLTMLDTRQYDRDITDLYYntgirsha 412
                 5*****************9888888877788888****************************************************9977767776665 PP

        PhoD 176 ....gdele...........aaeaevkdpartlLGeeQeqwLkaeLkasrarWkvlaqqvlmskvdldaelaegalpvnlDawdGypaeRerlletike 259
                     +   +             ++ ++ ++r+l+G++Qe+      k+ +a W++++qq+++++++      e+   ++ DawdGy+a+R+r+l+++  
  CDO72907.1 413 pnlrS---TtcasvkltftiVIDSIADVKNRSLMGTPQESS----SKKRDAIWRIVGQQIVFTQLN------ES--GFDVDAWDGYRANRQRILDHLYG 496
                 55540...0555555556556666677899********975....5667888**************......33..4899******************* PP

        PhoD 260 akirnvVvLtGDvHaawandl....d...ykdpdg.eavgvEfvtgsvssgglgeyla..eaadateeallaanpelkytelderGyveldlteeavta 348
                 +ki n+++L+GD+Ha+w++dl    d   y+ ++g +a+gvEf++++v+s++        +aad+ +++l++ n +l++ e ++rG+++l l+++ + a
  CDO72907.1 497 EKIDNTIILSGDSHANWVSDLahpnDtttYDPKTGkGAIGVEFAGTAVTSTSPFGAGIgpAAADKISQQLVQVNTDLQWSEGSYRGFFTLALNTTTAVA 595
                 *********************9887255688887789*************7655444447889999999*********************999876655 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0     3e-25   1.3e-21       1      90 []      93     191 ..      93     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 3e-25
      PhoD_N   1 hGVasGDptadsvilWTRvapesee.....rpvrvevevaedeafk.kvvrkgtalatseldytvkvevtgLkpgqeyfYrfr.ags..esspvGrtrT 90 
                 h VasGDp ++sv+lWTR+ p+ +       pv+v++++ ++++++ +  ++g a+++ ++d+t+kve+++Lkp+++y+++f  + +  ++spvG trT
  CDO72907.1  93 HHVASGDPLDNSVLLWTRAVPNGAVppdqsIPVCVSFKIFDNDRLSgRPLDSGDAFTSYDVDFTLKVEAQNLKPDTHYWFQFAdCTNpkTVSPVGMTRT 191
                 67******************99877899889**********999976999**********************************5555799*******9 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06     0.013      54      94 .]     149     191 ..      78     191 .. 0.86
   2 ?   -3.4   0.0       3.3   1.5e+04      19      50 ..     512     545 ..     511     578 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
  Pur_ac_phosph_N  54 tnyksgyshkatltgLepgttYyYrvgddeg..gwSevysfkT 94 
                      t+y+  ++ k+++++L+p+t Y +++ d ++  + S+v+ ++T
       CDO72907.1 149 TSYDVDFTLKVEAQNLKPDTHYWFQFADCTNpkTVSPVGMTRT 191
                      678889999*****************99877789999998887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.3
  Pur_ac_phosph_N  19 sWitpektkksvvrygtssda..lestaeatsst 50 
                      +W+++ ++++ +  y +++++     ++ +t +t
       CDO72907.1 512 NWVSDLAHPNDTTTYDPKTGKgaIGVEFAGTAVT 545
                      5777776677777777776664433333344333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05      0.12      64     138 ..     257     329 ..     219     332 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
      AAA_33  64 rkalsagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqka 138
                 rk+l ++ ++i+d  ++ ++ r +   +a + ++p   v+v+++ + l +R  kR+ + d   ev  +a+++++a
  CDO72907.1 257 RKTLGRELATIADYRLRLNQYRTDAGLVAAHVKAPWITVWVSVPAQALYHRRIKRSLQDD--HEVADQAWKAGTA 329
                 677788888999999999999999999999***************************855..4899999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 4208.59
//
Query:       CDO72908.1  [L=580]
Description: hypothetical protein BN946_scf185002.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.1e-140  466.7   1.8   9.1e-140  466.3   1.8    1.1  1  PNGaseA   Peptide N-acetyl-beta-D-glucosaminyl asparaginase a
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.32   11.0   0.0    1.4  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> PNGaseA  Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.3   1.8    1e-143  9.1e-140       1     434 []      36     454 ..      36     454 .. 0.97

  Alignments for each domain:
  == domain 1  score: 466.3 bits;  conditional E-value: 1e-143
     PNGaseA   1 PvetpkgsekckeevlllehtFgnsygkPfvgkytpP.ec....sfdrvvlnltvtssGrqydRlallylgdvevwRTSTaeptta.givwtylKdvse 93 
                 P+++p++++  ++++++l++tFg+s+g + v+++tpP +c    s++ ++ln+tvts+G+q+dRl+++++++ve+wRTST+ept++ gi+wtylKdv++
  CDO72908.1  36 PPPLPQDAK--QCTIQILQRTFGFSFGLAEVVQFTPPtDCgppgSWAGISLNFTVTSNGTQFDRLGIFTFQNVEIWRTSTPEPTRGdGIIWTYLKDVTR 132
                 667777766..8*************************9***********************************************99************ PP

     PNGaseA  94 YlaLfkepqklifdLgNliddtytgsfnvtltatfyaseelletaeaadlilpisarksasnsssafslpsd.katvtlslprntsravlsisasgqaa 191
                 Y++Lf++p+++i++L+Nl+++ ++g++++tl+atf+as+e +++a++a++i+p+s+   a+++++++s+p+  +++vt  +prn+ +++++++asg+++
  CDO72908.1 133 YIPLFAKPGTFILQLDNLLETGLDGQYATTLHATFFASSERHPPAPKANAIIPVST--LANDTGNEASVPPVfSLNVT--VPRNAVQIYAELYASGNGN 227
                 *******************************************************9..*************9888888..******************* PP

     PNGaseA 192 eEfWysNvlssdteafedtvgelyghspfRevqvlidGqlagvvwPfpviftGGisPglwrPivgidafDlreleiditpfLplLldgedheleikvag 290
                 eEfWy+N++++++ ++   +g++ g++pfRev++l+dGq+agv++P++viftGGi+P++wrPi++++a+Dl+++ id+tpf+p+L+dg++h+++i+v++
  CDO72908.1 228 EEFWYFNTANEFVPSLP--SGTTFGDGPFREVRMLVDGQVAGVAFPYAVIFTGGIVPTAWRPITSYGALDLPTYFIDLTPFVPVLTDGKPHNISIDVVS 324
                 *****************..9******************************************************************************* PP

     PNGaseA 291 ledeeegtatlsktvgsyWvvtgnlfvwldssskesegtivetdtkpeikakapslkvtreleqnsatgtneslsytveaerslsvest.........t 380
                 +ed        +++++++W+v+gnl+v++dsss+ ++g+i+++d +p +++k++            ++g n+++++tv+a+r++++e++          
  CDO72908.1 325 AED--------DHAINENWFVSGNLQVITDSSSRPTTGKITKYDVSPFAVSKTT-----------GSVGDNGDVNVTVSATRNIHIEAEitsgsgkttR 404
                 ***........9**********************************99998888...........678999****************99********99 PP

     PNGaseA 381 vtwsqklsfsntqllsqqglsqsvnqttsgkstvtekseakesdevevsfsyPl 434
                 v+wsq l+fsntq++ +++++q+v qt+sg+ ++t+++  + +d+    fsyPl
  CDO72908.1 405 VVWSQALEFSNTQQFLDNTFIQNVFQTASGSFSSTHNGIPALIDT----FSYPL 454
                 **************************************8888877....99998 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05      0.32      15      63 ..     395     443 ..     389     450 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.6e-05
      HTH_45  15 isegeakkTkimykanLsykllnkYLdmLvekglikkskekYvlTekGl 63 
                 i +g+ k T+++ +  L++++++++Ld    +++ ++ +++++ T+ G 
  CDO72908.1 395 ITSGSGKTTRVVWSQALEFSNTQQFLDNTFIQNVFQTASGSFSSTHNGI 443
                 568999**********************9999999***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3959.24
//
Query:       CDO72909.1  [L=287]
Description: hypothetical protein BN946_scf185002.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-16   59.5   4.7    3.5e-16   59.1   4.7    1.1  1  Pmp3      Proteolipid membrane potential modulator
  ------ inclusion threshold ------
        1.1    8.0   3.6        1.9    7.2   3.6    1.3  1  NPR3      Nitrogen Permease regulator of amino acid transport
        6.2    6.7  11.7        1.2    9.1   7.8    1.6  2  Med19     Mediator of RNA pol II transcription subunit 19


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   4.7   5.9e-20   3.5e-16       2      47 ..      22      67 ..      21      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 5.9e-20
        Pmp3  2 illillaiilPPlaValksGcsadllinilLtllgylPgviHAfyi 47
                +ll++   ++PPlaVa + G+++d+++n+ Lt++gy+Pg++H fyi
  CDO72909.1 22 VLLFIFGTLFPPLAVAARFGIGSDFWLNLFLTICGYIPGHVHNFYI 67
                6899*****************************************8 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.6   0.00031       1.9      40     103 ..     174     242 ..     169     261 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00031
        NPR3  40 edgkwrkskkkk........kkskrkrssrskekkskesskksessskse..sseekksskeseeseekesnee 103
                  +g+wr + + +        k     +s+++kekk++  ++++  s +++   ++++k+sk++ ++++ +++++
  CDO72909.1 174 GSGRWRYPANFEdaaleptrK-----KSKKKKEKKDRWARTEDAYSVADSstRKRKSKKSKATVDNDTYSRRSD 242
                 578899886666788553322.....333333333333333222222222002222222222222332222222 PP

>> Med19  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.48   2.8e+03     107     116 ..      92     101 ..      56     126 .. 0.55
   2 ?    9.1   7.8    0.0002       1.2     108     159 ..     190     240 ..     180     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.48
       Med19 107 qePkkknkek 116
                 +e k+k+++ 
  CDO72909.1  92 SEIKRKERRS 101
                 2222332322 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0002
       Med19 108 ePkkknkekhkkskvkd..akseetlsdseteegfekkhkkkkkedDkerkkkk 159
                 eP++k+++k+k++k +   + ++++++ds+   + ++k kk k   D++   ++
  CDO72909.1 190 EPTRKKSKKKKEKKDRWarTEDAYSVADSS---TRKRKSKKSKATVDNDTYSRR 240
                 588886655555555444488999999995...556777777755555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.46
# Mc/sec: 1857.61
//
Query:       CDO72910.1  [L=581]
Description: hypothetical protein BN946_scf185002.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3865.49
//
Query:       CDO72911.1  [L=348]
Description: hypothetical protein BN946_scf185002.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-74  247.5   0.2    8.4e-74  247.1   0.2    1.1  1  FBPase      Fructose-1-6-bisphosphatase, N-terminal domain
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.022   14.3   0.0    1.3  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   0.2   9.4e-78   8.4e-74       1     189 []      12     201 ..      12     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 247.1 bits;  conditional E-value: 9.4e-78
      FBPase   1 itltrfiveeqkeea.natgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivler 98 
                 itltr ++  q +    atg+lt ll+a++++ k+i+++vrka l+nl+Glag++Nv+G+eqkklDvl+++i+i+ l+as++++vlvSEE e+++++e 
  CDO72911.1  12 ITLTRHVLSDQFSLGpAATGDLTLLLTAIQTTSKFIATNVRKARLINLIGLAGETNVQGEEQKKLDVLSNDIMINSLRASGKCAVLVSEELEDAVIIED 110
                 69999999888765439********************************************************************************** PP

      FBPase  99 ekegkyvvafDPlDGSSnidtnvsvGtifsiyrkksedeetti.dvlqpGkeqvAAgyvvYGsstmlVltlgaGvngFtlDpslgefiltke 189
                 + +gky+v+fDPlDGSSnid++v +Gtif+iy+    ++++ti dvl+pG+e+vAAgy++YGss+ lVl++g+Gvng+tlD +lgefilt++
  CDO72911.1 111 KYKGKYCVVFDPLDGSSNIDAGVNIGTIFGIYH-IAPGSKGTIsDVLRPGSEMVAAGYTMYGSSANLVLSTGHGVNGYTLDAALGEFILTHP 201
                 *********************************.6688888999**********************************************95 PP

>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.4e-06     0.022       6      98 ..      38     128 ..      34     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC.CT.SSSSSEEEEEEEEETHHH CS
  Inositol_P   6 tkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakge.kseltedgltwivDPiDGTkn 98 
                 t+++++++++a +v + ++  n +    ++ + + + ++++d  ++++++++l+++ +  ++++ee  ++   +++ + + ++++ DP+DG +n
  CDO72911.1  38 TAIQTTSKFIATNVRKARLI-NLIGLAGET-NVQGEEQKKLDVLSNDIMINSLRASGKCAVLVSEELEDAVIiEDKYKGK-YCVVFDPLDGSSN 128
                 56667777788888888885.444444444.889999********************99999998744444344555555.9*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2552.15
//
Query:       CDO72912.1  [L=281]
Description: hypothetical protein BN946_scf185002.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-13   50.2   0.0    4.5e-13   49.5   0.0    1.4  1  DUF2418   Protein of unknown function (DUF2418)


Domain annotation for each model (and alignments):
>> DUF2418  Protein of unknown function (DUF2418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.5e-17   4.5e-13      43      95 ..     215     269 ..     180     270 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.5e-17
     DUF2418  43 l..lvvllslqlylliskfeqqikDkkiiqkevleEYnekfVkPrlnvlvrdvav 95 
                    ++  +   +  l +++e ++kDk+ii++evl+EY+ekfV+Pr+n++++d+av
  CDO72912.1 215 HepVSSPHASFTRALYRSYEALLKDKAIIAAEVLHEYDEKFVYPRVNPVRKDAAV 269
                 2444455555668999*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2000.04
//
Query:       CDO72913.1  [L=304]
Description: hypothetical protein BN946_scf185002.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.043   13.2   5.8      0.065   12.6   2.7    2.0  2  DUF3552       Domain of unknown function (DUF3552)
        3.2    8.1   6.6        2.9    8.3   0.0    3.4  4  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.021   1.8e+02      98     121 ..      38      61 ..      34      65 .. 0.42
   2 ?   12.6   2.7   7.3e-06     0.065      74     126 ..     119     171 ..     105     180 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.021
     DUF3552  98 eeslekkeesleekekelkqkeqs 121
                 +++l  +e+++  +e e++++e++
  CDO72913.1  38 TQALLARESNVAVREAEVARREAE 61 
                 333334444444444443333333 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.3e-06
     DUF3552  74 kerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleeke 126
                 + r +++   e ++ ++e ++ r+ee+++++e++ +++e+ + ++   l+e +
  CDO72913.1 119 RIRAEDILDRELKIAEREREISRREEAVNRREHDASRRESWIMEQLVLLNEAQ 171
                 55666666777777777777777777777777777777776666655555444 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00032       2.9      49      75 ..      34      63 ..      29      64 .. 0.85
   2 ?   -2.1   0.0      0.53   4.8e+03      48      61 ..      91     104 ..      79     108 .. 0.77
   3 ?    0.9   0.2     0.065   5.9e+02      60      75 ..     132     147 ..     116     155 .. 0.61
   4 ?   -0.6   0.2      0.18   1.6e+03      40      68 ..     253     277 ..     242     282 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00032
  Lzipper-MIP1 49 lpkkakellk...eiallEeevvkLEqkll 75
                  +pk ++ ll+   ++a+ E+ev+++E +ll
    CDO72913.1 34 TPKRTQALLAresNVAVREAEVARREAELL 63
                  79999999964447************9986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.53
  Lzipper-MIP1  48 llpkkakellkeia 61 
                     p++++  +ke++
    CDO72913.1  91 EAPPPVQTVIKEVV 104
                   46999999999986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.065
  Lzipper-MIP1  60 iallEeevvkLEqkll 75 
                   ia  E e++++E+ ++
    CDO72913.1 132 IAEREREISRREEAVN 147
                   3334555555555443 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.18
  Lzipper-MIP1  40 gsllslstllpkkakellkeiallEeevv 68 
                   + ++s++t +pk +  +    +++Eeevv
    CDO72913.1 253 IMTSSSTTQIPKTTSVE----VVVEEEVV 277
                   44455555566655443....35788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2125.72
//
Query:       CDO72914.1  [L=714]
Description: hypothetical protein BN946_scf185002.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0034   16.3   2.6     0.0034   16.3   2.6    3.2  3  Spc7             Spc7 kinetochore protein
     0.0049   15.8   4.5     0.0049   15.8   4.5    2.9  3  DUF812           Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.043   14.0   0.4      0.043   14.0   0.4    2.8  4  Fib_alpha        Fibrinogen alpha/beta chain family
       0.19   11.8   2.2        5.1    7.1   0.1    3.2  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
       0.76    8.3  10.7      0.033   12.8   1.6    2.2  2  AAA_13           AAA domain
        1.4    9.4   8.1       0.65   10.5   0.4    3.7  5  NPV_P10          Nucleopolyhedrovirus P10 protein
        1.8    9.1  25.7       0.07   13.6   5.8    4.0  3  Spectrin         Spectrin repeat
        2.8    8.2  27.4       0.06   13.6   4.4    3.4  3  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
        8.7    6.4  25.5      0.025   14.6   5.2    3.4  3  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4     0.096   1.9e+02     248     290 ..     319     361 ..     292     375 .. 0.56
   2 !   16.3   2.6   1.7e-06    0.0034     149     251 ..     392     494 ..     384     500 .. 0.64
   3 ?    1.6   2.6     0.052     1e+02     176     248 ..     531     606 ..     525     621 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.096
        Spc7 248 eeiaeaervleeckgwsesevsrlkeevkaleeltgwkivsls 290
                 ee ++++r l++  + ++  + +++++ +++  ++++k+ + +
  CDO72914.1 319 EEARQKQRALQRSSQYQSASLVAVHAQIEKIRGEHDLKLRRTQ 361
                 3444444444444444444444444444444444444444433 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.7e-06
        Spc7 149 egleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksele 247
                 e++++  + ++++ e++   ++e ee+     +e ++++e  +  ++   + +ee+r+++a+l + ++ + +++++l++q e+l+ +  ++++ +s+l 
  CDO72914.1 392 EEIRNYVAGINEWLEKIRPTVQEQEEKARVAAQEKREEEETMQAEAEARAAAVEEARSQVAALTTRVDDLDEKMTDLESQFEDLRVAPLDVDNVISRLL 490
                 444555555666666666666666655555555555555544444556678888888888888888888888888888888888777666666666666 PP

        Spc7 248 eeia 251
                  ++a
  CDO72914.1 491 GQVA 494
                 6655 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.052
        Spc7 176 kaeleeeleklqeaaeelesidkeeLeelreelael...kaeieekkkelaelqeqleeleekieelkeqkselee 248
                 ++el ee e+l+++ +e++++ +  Le+++++ a++   +  ++++ +++a ++ +l+el+++ ++ +  +++ ++
  CDO72914.1 531 EKELAEECERLERQLAECTTLLERLLEQVHDQKARNvpkDLVYHQLAADHAAMELRLQELRQRQQDDSVVIDSNRA 606
                 4566667777777666666666666666665555442223345555556666666666666555554444444444 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.3      0.05        99     379     437 ..     307     364 ..     292     372 .. 0.79
   2 !   15.8   4.5   2.5e-06    0.0049     338     425 ..     390     478 ..     387     482 .. 0.90
   3 ?   -2.1   0.9      0.64   1.3e+03     341     374 ..     533     566 ..     528     618 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.05
      DUF812 379 kevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelkesk 437
                 k v+lk  ++  l++a +  ++Lq+  + ++++lv + +q ek R     ++r+ +++ 
  CDO72914.1 307 KAVALKIDLYT-LEEARQKQRALQRSSQYQSASLVAVHAQIEKIRGEHDLKLRRTQKKF 364
                 55555555544.5799999999*********************9999888888877765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.5e-06
      DUF812 338 qieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlell.pdaeeniekLqalveasaqrlvelakqWekhRvp 425
                 ++ee+++ ++ ++e ++k++ ++++ ee+++   +e+ e+e++++ +  + + + ++a +++++L   v++  +++  l++q+e  Rv+
  CDO72914.1 390 EVEEIRNYVAGINEWLEKIRPTVQEQEEKARVAAQEKREEEETMQAEAEARAAAvEEARSQVAALTTRVDDLDEKMTDLESQFEDLRVA 478
                 68999999***********************9999999999999888777655549*****************************9986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.64
      DUF812 341 eleskieeleeeikklessikqveeeleeekeen 374
                 el ++ e+le +++++++ ++++ e++  +k+ n
  CDO72914.1 533 ELAEECERLERQLAECTTLLERLLEQVHDQKARN 566
                 3333344444444444444444444444433333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       4.3   8.6e+03      81      81 ..     337     337 ..     300     371 .. 0.52
   2 ?   14.0   0.4   2.1e-05     0.043      43     126 ..     390     473 ..     386     477 .. 0.89
   3 ?   -0.7   0.4      0.73   1.5e+03      89     114 ..     537     562 ..     528     621 .. 0.47
   4 ?   -3.3   0.0       4.5     9e+03      26      39 ..     655     668 ..     630     695 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
                 H CS
   Fib_alpha  81 k 81 
                  
  CDO72914.1 337 A 337
                 1 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.1e-05
                 CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  43 eleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdid 126
                 e+eei+n    ++e  ++i+ +++e++++++   +  ++ +++++ e +   + + +  s++ +L++ ++++++k+++Le++ +
  CDO72914.1 390 EVEEIRNYVAGINEWLEKIRPTVQEQEEKARVAAQEKREEEETMQAEAEARAAAVEEARSQVAALTTRVDDLDEKMTDLESQFE 473
                 688999999999999999999999999999988888888899999999999999*9999*********************9865 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.73
                 CCCHHHHHHHCCHHHHHHHHHHHHHH CS
   Fib_alpha  89 eilrlketidaqesnirvLqnvlesn 114
                 e +rl++++ +  + ++ L + ++++
  CDO72914.1 537 ECERLERQLAECTTLLERLLEQVHDQ 562
                 33333333322222222222222222 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 4.5
                 CCCCCCCCCHHHCC CS
   Fib_alpha  26 llkyekdvkkdlek 39 
                 +++ ++ v++ l+k
  CDO72914.1 655 MNELRRGVDEALSK 668
                 22222222222222 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   2.5e+03      32      70 ..     342     369 ..     327     416 .. 0.58
   2 ?    7.1   0.1    0.0026       5.1      24      59 ..     443     477 ..     435     499 .. 0.74
   3 ?    2.2   0.2     0.085   1.7e+02      35      64 ..     533     566 ..     531     615 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldtrldtllt 70 
                   + aq++++  + + +L   ++++ +l+           +
    CDO72914.1 342 VHAQIEKIRGEHDLKLRRTQKKFDELM-----------E 369
                   333333333333333333333333332...........2 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0026
  Baculo_PEP_C  24 airlqnvqilaqlatlldaietqLnalsedlkslla 59 
                   a+    +q+ a+l+t +d++++++++l++++++l  
    CDO72914.1 443 AVEEARSQV-AALTTRVDDLDEKMTDLESQFEDLRV 477
                   666677899.99**************9999998643 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.085
  Baculo_PEP_C  35 qlatlldaietqLnalsedlksllaeldt....r 64 
                   +la+  + +e+qL + ++ l++ll+++++    +
    CDO72914.1 533 ELAEECERLERQLAECTTLLERLLEQVHDqkarN 566
                   5778888999999999999999999888744440 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.6   1.7e-05     0.033     320     471 ..     340     491 ..     281     502 .. 0.65
   2 ?    0.2   2.1      0.11   2.2e+02     286     343 ..     532     593 ..     529     621 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
      AAA_13 320 eedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakie...........sikklvaeineliakhNekvanleeekeeakkklelhlveel 407
                    ++++++   +++ +L+  q++ ++  +++++                        +  +v+ei + +a  Ne  +++   ++e ++k +    e+ 
  CDO72914.1 340 VAVHAQIEKIRGEHDLKLRRTQKKFDELMERLVR-----------FptsgpstvvdpGVPPEVEEIRNYVAGINEWLEKIRPTVQEQEEKARVAAQEKR 427
                 2224444444444444444444444444444444...........022222222222456789999999999999999999999999999999888777 PP

      AAA_13 408 eseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf.G 471
                 e+e ++++ + ++ ++a+e++  ++++ ++++  l+e++ +Le q +d + a  ++ + +++  G
  CDO72914.1 428 EEE-ETMQAEAEARAAAVEEARSQVAALTTRVDDLDEKMTDLESQFEDLRVAPLDVDNVISRLlG 491
                 777.788899999999*****************************99988776666666666555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
      AAA_13 286 erLekliekveskkselleklkavsde....asensafeedkeelkaeaealeeqLkglqra 343
                 ++L +  e++e++ +e+++ l+ + ++    + +n   +  +++l a   a+e +L++l+++
  CDO72914.1 532 KELAEECERLERQLAECTTLLERLLEQvhdqKARNVPKDLVYHQLAADHAAMELRLQELRQR 593
                 55666666666666666666655555433213334445556999999999999999999886 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.38   7.6e+02      22      62 ..     310     350 ..     300     377 .. 0.81
   2 ?   -1.1   0.0       1.4   2.7e+03      36      59 ..     390     413 ..     380     418 .. 0.64
   3 ?   10.5   0.4   0.00033      0.65      12      47 ..     443     475 ..     441     497 .. 0.63
   4 ?   -2.3   0.1       3.2   6.4e+03      38      58 ..     539     559 ..     532     564 .. 0.50
   5 ?   -3.2   0.0       6.3   1.2e+04      42      66 ..     668     693 ..     653     703 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.38
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 al+  +  ++e  ++   l+   + qsa+L ++++++e+I 
  CDO72914.1 310 ALKIDLYTLEEARQKQRALQRSSQYQSASLVAVHAQIEKIR 350
                 55556666777777777788888889999999999999985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
     NPV_P10  36 dvtelnekLdaqsaqLaeletkve 59 
                 +v+e+ + + ++++ L+++  +v+
  CDO72914.1 390 EVEEIRNYVAGINEWLEKIRPTVQ 413
                 555555555555555555555554 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00033
     NPV_P10  12 dikavddkVdalqqqvddvqenlpdvtelnekLdaq 47 
                 ++++  ++V al ++vdd++e++ d   l+++++++
  CDO72914.1 443 AVEEARSQVAALTTRVDDLDEKMTD---LESQFEDL 475
                 5666667777777777777776666...33444333 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.2
     NPV_P10  38 telnekLdaqsaqLaeletkv 58 
                 + l+ +L + ++ L+ l ++v
  CDO72914.1 539 ERLERQLAECTTLLERLLEQV 559
                 334444555555555444444 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 6.3
     NPV_P10  42 ekLdaqsaqL.aeletkvenIqdiLn 66 
                 ++ +++ aqL a+ + ++  Iq + n
  CDO72914.1 668 KQEEDLCAQLfAACQPAIRLIQAMKN 693
                 44444444442445556666666666 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.1      0.03        60      16      88 ..     298     370 ..     293     372 .. 0.87
   2 ?   13.6   5.8   3.5e-05      0.07      10      93 ..     398     476 ..     390     479 .. 0.90
   3 ?    0.6   3.8      0.38   7.6e+02      65      98 ..     588     621 ..     529     622 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.03
                 HHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHH CS
    Spectrin  16 Wieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelner 88 
                 W +  ++l++   l  dl ++++  +k +al++  + q   + a+ ++ ek+  e++ +  +++++ +el er
  CDO72914.1 298 WENYVRTLAKAVALKIDLYTLEEARQKQRALQRSSQYQSASLVAVHAQIEKIRGEHDLKLRRTQKKFDELMER 370
                 55555666666667779999********************************99999999********99876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHH CS
    Spectrin  10 adeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLk 93 
                 ++ ++eW+e++++ +++++  k   ++q++ ++ ++++ae +a+   v++   +  +l+++     +++ e++ +l++++e+L+
  CDO72914.1 398 VAGINEWLEKIRPTVQEQEE-KARVAAQEKREEEETMQAEAEARAAAVEEARSQVAALTTR----VDDLDEKMTDLESQFEDLR 476
                 66799**********88888.8888999******************************999....59**************998 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.38
                 HHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  65 eklldeghsaseeieerleelnerWeeLkelaae 98 
                 ++l ++++++s  i +  +e+ + W+ L++++++
  CDO72914.1 588 QELRQRQQDDSVVIDSNRAEIANVWALLQQATDR 621
                 6677888889999999999999999999999875 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.5     0.052     1e+02      52     109 ..     308     368 ..     298     376 .. 0.86
   2 ?   13.6   4.4     3e-05      0.06      63     123 ..     415     476 ..     399     489 .. 0.85
   3 ?    2.5   6.2     0.076   1.5e+02      84     156 .]     531     596 ..     528     596 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.052
  Jnk-SapK_ap_N  52 leelreeleqLeteyerekelrkrae...eeleeiedqweeerkelqekveqleeenrele 109
                    +  l+ +l +Le+ ++++++l++ ++     l  +  q+e+ r e++ k+ +++++ +el 
     CDO72914.1 308 AVALKIDLYTLEEARQKQRALQRSSQyqsASLVAVHAQIEKIRGEHDLKLRRTQKKFDELM 368
                    55688899999999*****999999988888999999999999999999999999999887 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3e-05
  Jnk-SapK_ap_N  63 eteyerekelrkraeeeleeiedqweee.rkelqekveqleeenrelelkaknaadqlsrle 123
                    ++e+ r ++++kr+eee +++e + +    +e +++v+ l+++++ l+ k+ +++ q ++l 
     CDO72914.1 415 QEEKARVAAQEKREEEETMQAEAEARAAaVEEARSQVAALTTRVDDLDEKMTDLESQFEDLR 476
                    567899999*************999976258999**************99999999988875 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.076
  Jnk-SapK_ap_N  84 edqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelverqrd 156
                    e+++ ee++ l+ ++++ ++  ++l        +q+++ + ++      y +l   +  +  +l+el +rq d
     CDO72914.1 531 EKELAEECERLERQLAECTTLLERLL-------EQVHDQKARNVPKDLVYHQLAADHAAMELRLQELRQRQQD 596
                    88889999999999999999999999.......9999999999999999999999999999999999999975 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.7      0.49   9.8e+02      49      95 ..     320     363 ..     309     374 .. 0.43
   2 ?   14.6   5.2   1.2e-05     0.025      29     112 ..     405     488 ..     396     496 .. 0.90
   3 ?    1.6   5.1      0.12   2.5e+02      20      83 ..     532     595 ..     528     610 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.49
  CENP-F_leu_zip  49 tskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqer 95 
                     +++++  +l+   +  +++l   +++++++r e + L  +l+  q++
      CDO72914.1 320 EARQKQRALQRSSQYQSASLVAVHAQIEKIRGEHD-L--KLRRTQKK 363
                     33333333333333333333333333333333332.1..33333444 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-05
  CENP-F_leu_zip  29 LerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenllee 112
                     Le+   +++e+ ek+ + a ++++e et+++e e  a+  +e +++++al+   ++L++++ +  ++ ++L  + +++ n++++
      CDO72914.1 405 LEKIRPTVQEQEEKARVAAQEKREEEETMQAEAEARAAAVEEARSQVAALTTRVDDLDEKMTDLESQFEDLRVAPLDVDNVISR 488
                     566666789999999999999999999999999999999999999999999999999999999999999999999999999876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.12
  CENP-F_leu_zip  20 dsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrseke 83 
                       L +  e+Ler+l +    +e++  ++ ++ka         ++la+    +el L++lr+ ++
      CDO72914.1 532 KELAEECERLERQLAECTTLLERLLEQVHDQKARNVPKDLVYHQLAADHAAMELRLQELRQRQQ 595
                     5688999**************************9999899999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1932  (0.107758); expected 358.6 (0.02)
Passed bias filter:                      824  (0.0459591); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 4434.84
//
Query:       CDO72915.1  [L=270]
Description: hypothetical protein BN946_scf185002.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-72  244.1   0.0    1.4e-72  243.8   0.0    1.0  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.0   7.9e-77   1.4e-72       1     219 [.      41     264 ..      41     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 7.9e-77
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHH...HHHHHHHHHHHHHT.TEEEEEESSGG CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellk...eellkeelkellke.gvrvrviGdle 93 
                   i+DGNrR+A+++g++ +++Gh+ G+ +l+++le+c++l+v++v+ YafS+eNfkRs+eev+alm+l++    el++++  e+l++ g+r+ v+G+++
    CDO72915.1  41 ILDGNRRYARRKGMQ-VKQGHTDGFYNLRKMLEICIKLKVRCVSAYAFSIENFKRSPEEVNALMDLAEeklLELCQKG--EILDKyGIRLVVVGHRD 134
                   89***********55.555************************************************94443455555..788888*********** PP

                   GS-HHHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG...GGHSHHHHHCTSTT..T.SSS-SEEEEESS--S-TTSST CS
  Prenyltransf  94 llpedvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk...eeideetlekhlytaka.lpdpDlliRtsGeeRlSnFll 186
                   +lpe+vl a+ekae++t++n++ +++n++++Y+srdei++av++++k+  e++++   +ei+++++e++l+t+ a  p++D+l+R+sG++RlS+++l
    CDO72915.1 135 MLPERVLVAAEKAERMTRHNDR-AIFNLCMPYTSRDEITTAVHSVIKSRLEDETDdrqAEITADEIEAYLMTSIAgSPPLDILVRSSGVKRLSDYML 230
                   ******************6666.**********************98887665554335667899******977789******************** PP

                   TTTTT-E.EEEESSSGGG--HHHHHHHHHHHHHC CS
  Prenyltransf 187 wqlayse.lyfldvlWPdfskedllealleyqkr 219
                   wq+++++ l f++ +WP+f+  d+++++l+yq++
    CDO72915.1 231 WQCSENTqLQFSSSYWPEFGLLDFVPIILDYQRK 264
                   **877768************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1889.48
//
Query:       CDO72916.1  [L=327]
Description: hypothetical protein BN946_scf185002.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-05   24.1   4.8    3.4e-05   24.1   4.8    2.0  2  zf-RING_2      Ring finger domain
    0.00012   21.6   0.4    0.00022   20.8   0.4    1.5  1  SWIM           SWIM zinc finger
     0.0039   17.1   1.3     0.0039   17.1   1.3    1.9  2  Prok-RING_1    Prokaryotic RING finger family 1
  ------ inclusion threshold ------
      0.011   15.6   5.5      0.022   14.7   5.5    1.5  1  PHD            PHD-finger
      0.032   14.1   2.2      0.032   14.1   2.2    2.2  3  C1_1           Phorbol esters/diacylglycerol binding domain (
      0.044   13.6   4.8      0.099   12.5   4.8    1.5  1  zf-RING_4      RING/Ubox like zinc-binding domain
       0.18   12.2   0.1       0.18   12.2   0.1    2.3  2  EGF_alliinase  Alliinase EGF-like domain
        0.2   11.9   6.2       0.27   11.5   4.6    2.0  2  FANCL_C        FANCL C-terminal domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.6       1.9   4.2e+03      18      25 ..     140     148 ..     128     150 .. 0.59
   2 !   24.1   4.8   1.5e-08   3.4e-05       1      44 []     218     267 ..     218     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
   zf-RING_2  18 llpCgHv.f 25 
                   +C+H+ f
  CDO72916.1 140 GNHCKHIlF 148
                 335888645 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.5e-08
   zf-RING_2   1 deCpICleelssads..vl.llpCgHvfhreClerwlrssst...CPlCr 44 
                 d+CpIC+e+++  d   ++ +++Cg   h +C+++w  + +    C +Cr
  CDO72916.1 218 DDCPICYENMHGIDGklLTfCEECGNGLHLQCFQQWAINAKAgvtCVFCR 267
                 58********4433334443558**99*********555555568****9 PP

>> SWIM  SWIM zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   9.9e-08   0.00022       1      39 [.     122     153 ..     122     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 9.9e-08
        SWIM   1 yrVtlddervrlnkatCsCpefqkngipCkHalAvllal 39 
                 y+V +d+      k +C Cp+   +g  CkH+l v+l++
  CDO72916.1 122 YTVVIDK------KPSCNCPDA-MKGNHCKHILFVFLKV 153
                 9999**8......*******85.5************975 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.3   1.7e-06    0.0039       4      37 ..     217     252 ..     215     255 .. 0.85
   2 ?   -2.0   0.1       1.6   3.5e+03       3      12 ..     259     268 ..     257     270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.7e-06
  Prok-RING_1   4 gkkCpvCgkelk..eedDiVvCpeCgtpyHraCyek 37 
                  ++ Cp+C ++++  +++ +  C eCg   H +C+++
   CDO72916.1 217 EDDCPICYENMHgiDGKLLTFCEECGNGLHLQCFQQ 252
                  789********9333466899*************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
  Prok-RING_1   3 tgkkCpvCgk 12 
                   g  C  C+ 
   CDO72916.1 259 AGVTCVFCRA 268
                  5778888875 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   5.5   9.6e-06     0.022       2      50 ..     220     267 ..     219     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.6e-06
                 BTTTTS..TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkk..ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 C +C +  +  +++ l +C++C++  H +C +    +++      +C  C+
  CDO72916.1 220 CPICYEnmHGIDGKLLTFCEECGNGLHLQCFQQWAINAKA---GVTCVFCR 267
                 9*****755555777889*************988775444...35788886 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.2   9.5e+03      15      21 ..     141     147 ..     136     154 .. 0.68
   2 ?   14.1   2.2   1.4e-05     0.032      11      49 ..     217     256 ..     211     260 .. 0.90
   3 ?    0.2   0.1      0.32   7.1e+02      24      36 ..     256     268 ..     253     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.2
                 TTT-SB- CS
        C1_1  15 khCgefl 21 
                 +hC+ +l
  CDO72916.1 141 NHCKHIL 147
                 5666665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.4e-05
                 --B-TTT-SB--S.SSS-EEEETTT--EE-CCCCTTS-SB CS
        C1_1  11 ptfCkhCgeflwg.kekqglkCswCkllvHkkChekvpke 49 
                 +  C  C e ++g  +k    C++C+   H +C+++ +++
  CDO72916.1 217 EDDCPICYENMHGiDGKLLTFCEECGNGLHLQCFQQWAIN 256
                 56799*****************************998765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.32
                 SSS-EEEETTT-- CS
        C1_1  24 kekqglkCswCkl 36 
                  +k g++C  C+ 
  CDO72916.1 256 NAKAGVTCVFCRA 268
                 5789999999975 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.8   4.4e-05     0.099       1      46 [.     220     269 ..     220     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
   zf-RING_4   1 cplCdeel.detdkdlkpC.eCgyqiClfCyhr..ileeeegrCPaCree 46 
                 cp+C e++   ++k l+ C eCg  + l C+++  i ++++  C  Cr +
  CDO72916.1 220 CPICYENMhGIDGKLLTFCeECGNGLHLQCFQQwaINAKAGVTCVFCRAK 269
                 9*******667778899**99**********983344467899****986 PP

>> EGF_alliinase  Alliinase EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     8e-05      0.18      22      50 ..     119     145 ..     114     148 .. 0.85
   2 ?   -3.6   1.8       6.8   1.5e+04      31      44 ..     230     243 ..     219     250 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8e-05
  EGF_alliinase  22 GraflDglvldgkpvCECnsCyaGkdCsq 50 
                    G+++  ++v+d kp+C C +  +G+ C +
     CDO72916.1 119 GNVY--TVVIDKKPSCNCPDAMKGNHCKH 145
                    6666..4889*****************76 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.8
  EGF_alliinase  31 ldgkpvCECnsCya 44 
                    +dgk    C++C +
     CDO72916.1 230 IDGKLLTFCEECGN 243
                    56655556666655 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   3.4e+03      41      64 ..     112     135 ..     108     142 .. 0.71
   2 ?   11.5   4.6   0.00012      0.27       2      43 ..     217     256 ..     216     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
                 HHHHHSSS-TTT--EEE-TTT-SE CS
     FANCL_C  41 lrslkesrqsfdvlfGeCPyCkkk 64 
                 +  l ++ ++++v++ + P C+ +
  CDO72916.1 112 FSVLGSTGNVYTVVIDKKPSCNCP 135
                 556666777888888888888765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00012
                 --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH CS
     FANCL_C   2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrs 43 
                 e +C+iCy +    +    + C++  C++  H +C ++W  +
  CDO72916.1 217 EDDCPICYENMHGIDGKLLTFCEE--CGNGLHLQCFQQWAIN 256
                 789********9999999999*85..*************755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2408.10
//
Query:       CDO72917.1  [L=291]
Description: hypothetical protein BN946_scf185002.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-49  168.9   0.3    1.6e-49  168.4   0.3    1.2  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4   0.3   8.9e-54   1.6e-49       2     186 .]      45     228 ..      44     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 168.4 bits;  conditional E-value: 8.9e-54
                  HHHHHHHHHHHTTSSCTTBCEEEEEET.STTEEEEEBTSS-GGGHTGGGEEEEETTSCEEE..ECECSSSTB-.....TTHHHHHHHHHH-TT-SEEE CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvp.eedsflitpsgvdfeeltaedlvvvdldsgevv..egkekggkps.....setplHlaiykarpdaravv 91 
                  +la+a+r+++++g++eg++G+i+vr++ ++d+f+++p+g++f+ ++++dl++vd + g+v   e       p+     +++ +H+ai++arpd+++ +
   CDO72917.1  45 RLAQAFRIFGKLGYDEGVAGHITVRDSiRTDCFWVNPFGKHFSLIQPSDLILVDHH-GNVQpaESG-----PNqflnkAAFMIHSAIHAARPDVNCAA 136
                  69***********************8888*************************87.865511332.....3334447******************** PP

                  EE--HHHHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH....HHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Aldolase_II  92 HtHspaavalsalagkeglppltqeaaklllgdevpvipyaapgteel....gealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiq 185
                  H+Hs ++ a+s++  ++ l+++tq++++++  ++ +v++ +  g + l    g++++eal+ ++kav+l+nHG+l++++t+e++v+ +++le+++++q
   CDO72917.1 137 HSHSVYGRAFSTF--GKHLDMMTQDSCAFY--QDHGVYDQYG-G-VVLnedeGAHIVEALG-NKKAVILQNHGILVAADTIEATVHFFIALEKSCQVQ 227
                  ***********65..688**********77..6678866666.4.55557779*******8.88*********************************9 PP

                  H CS
  Aldolase_II 186 l 186
                  l
   CDO72917.1 228 L 228
                  6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2167.05
//
Query:       CDO72918.1  [L=950]
Description: hypothetical protein BN946_scf185002.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     2e-261  868.0   0.1   3.5e-261  867.3   0.0    1.4  2  FTHFS          Formate--tetrahydrofolate ligase
    5.1e-68  227.4   0.2    5.1e-68  227.4   0.2    1.8  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
    2.8e-39  134.0   0.8    8.6e-39  132.4   0.8    1.9  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
      0.057   13.3   0.0        1.9    8.4   0.0    2.8  2  Prefoldin      Prefoldin subunit
       0.35   11.5   2.7        1.1    9.9   0.7    2.6  2  ABATE          Putative stress-induced transcription regulato


Domain annotation for each model (and alignments):
>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.54     2e+03      60      84 ..     271     295 ..     266     298 .. 0.85
   2 !  867.3   0.0  9.8e-265  3.5e-261       2     554 .]     321     950 .]     320     950 .] 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.54
                 EESS--TT--SHHHHHHHHHHHHHH CS
       FTHFS  60 taitPtplGeGKttttigLaqalnk 84 
                 + itP p G G  t+++ ++++l+ 
  CDO72918.1 271 SHITPVPGGVGPMTVAMLMVNTLRA 295
                 679*************999999876 PP

  == domain 2  score: 867.3 bits;  conditional E-value: 9.8e-265
                 -HHHHHHCS----HHHHHHCTT--CCCEEEBSTTEEEE-CHHCCTCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHH.HTT--EEEEE----SH CS
       FTHFS   2 sdieiaqeaklkpieeiaeklglkeeelelyGkykakvslkvlerllkekkkgklilvtaitPtplGeGKttttigLaqaln.klgkkavaalRepslG 99 
                 sdieia ++++kpi+e+a++lgl+ +e+elyGkykakv+l+vl+rl +++k+gk+i++++itPtplGeGK+tttigLaqal+ +lg+ a+a++R+ps+G
  CDO72918.1 321 SDIEIAMAQTPKPIAELAHELGLHPDEVELYGKYKAKVELSVLKRL-EHRKNGKYIIISGITPTPLGEGKSTTTIGLAQALGaHLGRPAFACVRQPSQG 418
                 8******************************************876.9*********************************99**************** PP

                 HHHCST--SCEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTTT............................................. CS
       FTHFS 100 PvfgiKGgAaGGGysqvvPmedinLhltGDihaitaannllaalidnrifhene............................................. 153
                 P+fgiKGgAaGGGysqv+Pm+++nLhltGDiha+taannllaa++d+r+fhe++                                             
  CDO72918.1 419 PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAVTAANNLLAAALDARMFHEATqsdkmpvqalysrlvptqkgkrefaplmikrlqklginktdpnel 517
                 *************************************************************************************************** PP

                 ..........T-EECCCE---EEESS--GGGSSEEES-SSTTS---EEE-EEEGGGSHHHHHHHH-SSHHHHHHHHHC-EEEEETTS-EEECCCCT-HH CS
       FTHFS 154 ..........ldidpkkitwkrvlDvndraLRkivvglggkekgvpretgfditvasEimailaLakdledlkerlgrivvaytkdgepvtaedlkvag 242
                           ld+dp++itw+rvlD+ndr+LRki++g++++ekg++r tgfdi+vasE+ma+laL+++l+d++erlg++vva++k+gep+ta+dl+v g
  CDO72918.1 518 tpeeinrfarLDVDPDTITWNRVLDTNDRFLRKITIGQAPTEKGHERVTGFDIAVASECMAVLALTTSLADMRERLGNMVVATSKRGEPITADDLGVGG 616
                 *************************************************************************************************** PP

                 HHHHHTTTTTS-EEEEETT--EEEE-----SSSS--B--HHHHHHHHHH...........-SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEE CS
       FTHFS 243 alavllkdaikPnlvqtlegtpalvHggPFAniahGcnsviatklalkl...........adyvvtEaGFgadlgaekfldikcrasglkpdavvlvat 330
                 alavl+kdaikPnl+qtlegtp++vH+gPFAniahG++s++a+++alkl            +yv+tE GFgad+g+ekf++ikcr+sgl+pda+v+vat
  CDO72918.1 617 ALAVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSILADRVALKLagteegdspdrVGYVLTEGGFGADMGMEKFCNIKCRVSGLTPDATVIVAT 715
                 ***********************************************************99************************************** PP

                 HHHHHHHTT.....--C...CCTTS--HHHHHHHHHHHHHHHHHHCTTT--EEEEEE--TT--HHHHHHHHHHH.HCTTSEEEEE-HHHHGGGGGHHHH CS
       FTHFS 331 vraLklhgg.....vek...eelkeenlealekGlanlekhienvkkfgvpvvvainkfktDteaelelvkela.eakavevalsevwakGgeGalela 420
                  raLk+hgg     ++k   e++++e+l +l++G++nl+khien +kfgv+v+vain+f++Dteael+lv+e+a +a+a ++++s++wa+Gg+Ga +la
  CDO72918.1 716 TRALKMHGGgpdvtPGKplaETYTKEDLVTLREGCKNLAKHIENSRKFGVKVIVAINQFASDTEAELQLVREQAlAAGADAAVVSNHWAEGGAGARALA 814
                 *********998874446669****************************************************9899999999**************** PP

                 HHHHHHCC-.-.---SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-EEEE--SSSSSSSTT--SS--S-EEEEEEEEEETTTT CS
       FTHFS 421 eavvealee.kefkflYdlelsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapegftltvrevrlsaGag 518
                 eav++++e+ ++f+flYdl+l+ie+kie i+keiYgadg+else+a+k++k++++qg+++lp+c+aKtqyS+s+dpklkg+p+gft+++r+vrlsaGag
  CDO72918.1 815 EAVIAVCESpSNFSFLYDLNLPIEKKIEIISKEIYGADGIELSEQAQKQIKTYTSQGYGNLPICMAKTQYSFSHDPKLKGVPTGFTIPIRSVRLSAGAG 913
                 ********77***************************************************************************************** PP

                 EEEEESST--SS----SS-GGGC-EE-TT.SEEES-- CS
       FTHFS 519 fivalageimtmPGlpkkpaaekidvdee.gkieGlf 554
                 f+++l g+++tmPGl+++p + ++ +d + gk++Glf
  CDO72918.1 914 FLYPLLGDMQTMPGLGTRPGFWEVGLDPDtGKVVGLF 950
                 ***************************999*****98 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.2   1.4e-71   5.1e-68       1     158 [.     133     298 ..     133     300 .. 0.98
   2 ?   -3.9   0.2       2.1   7.4e+03     130     151 ..     377     398 ..     376     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: 227.4 bits;  conditional E-value: 1.4e-71
                    SHHHHHHHHTT..--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B- CS
  THF_DHG_CYH_C   1 hplnlgrlvkg..eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelik 94 
                    h +n+g+l ++  ++ ++pctp gv++ll++tgi+++g ++vv+Grs+ivg+p+a++L +++atVt chs+tk+l++i+r+adivv+a+Gkp+++k
     CDO72918.1 133 HAYNIGHLSSRasDPLFTPCTPSGVIRLLDSTGIQIAGSRAVVLGRSDIVGSPVAAMLRHRDATVTQCHSRTKNLEDIVRQADIVVSAIGKPQFVK 228
                    789******998788********************************************************************************* PP

                    GGGS-TT-EEEE---EEC......-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHC CS
  THF_DHG_CYH_C  95 aemvkegavviDvGinrv......ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 158
                    ++++k+gavviDvG+n v      ++++lvGDvdfe++++vas+itPvpgGVGpmTvaml+ ntl+aa+r
     CDO72918.1 229 GSWIKPGAVVIDVGTNYVpdatkkSGQRLVGDVDFESASAVASHITPVPGGVGPMTVAMLMVNTLRAAER 298
                    **********************999999***************************************987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.1
                    SSEE--TTTSCHHHHHHHHHHH CS
  THF_DHG_CYH_C 130 asaitPvpgGVGpmTvamllkn 151
                    +s itP p G G+ T+++ l++
     CDO72918.1 377 ISGITPTPLGEGKSTTTIGLAQ 398
                    5679****99999998876655 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.8   2.4e-42   8.6e-39       1     116 []      10     130 ..      10     130 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 2.4e-42
                  E--HHHHHHHHHHHHHHHHHHHHHH..T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS- CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkek..gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPl 96 
                  ++dG+a+ak+iree++e++++l+++  +++ +Lavi++g++p+s+vYvr+k+ka+eevGie++++k++ed++e+e+++++++lneddsv+GilvqlPl
   CDO72918.1  10 IIDGTAVAKSIREEVAEKIKSLQSQypRFRASLAVIQAGERPDSSVYVRMKAKAAEEVGIEFKHVKVSEDAEEAEIIDIVNKLNEDDSVSGILVQLPL 107
                  79*********************966699********************************************************************* PP

                  STTS-...HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  97 pkhid...ekaileaispeKDVD 116
                    h+    e++++ea+sp+KDVD
   CDO72918.1 108 GPHVGadgERNVTEAVSPKKDVD 130
                  999844459*************9 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.089   3.2e+02       6      34 ..      22      50 ..      17      71 .. 0.68
   2 ?    8.4   0.0   0.00052       1.9      21      75 ..     196     251 ..     187     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.089
                HHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
   Prefoldin  6 eslqaelaqlkeaieelektletlktlkk 34
                e++++++++l+++ ++++++l+ ++  + 
  CDO72918.1 22 EEVAEKIKSLQSQYPRFRASLAVIQAGER 50
                45666677777777777777777666555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHHHTT..-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEH CS
   Prefoldin  21 elektletlktlkk.edegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksl 75 
                 +++++ ++ k+l++   +   v+  +g+  +vk++ +++  v++d+G++y  + ++
  CDO72918.1 196 TVTQCHSRTKNLEDiVRQADIVVSAIGKPQFVKGSWIKPGAVVIDVGTNYVPDATK 251
                 556666666666664333333444589999********************866665 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       0.3   1.1e+03      52     105 ..     584     640 ..     545     667 .. 0.67
   2 ?    9.9   0.7   0.00032       1.1      33     121 ..     720     816 ..     701     824 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHTHHH.H.........HHHHHHH..HHS----EEEE-TTS-E.. CS
       ABATE  52 araraLRealrallaaaa.agdpppaaalaalnall..aaappaprLvrhddgpvdr 105
                  ++ + Re+l  ++ a+  +g+p  a++l +  al+   + +  p L ++ +g++++
  CDO72918.1 584 TSLADMRERLGNMVVATSkRGEPITADDLGVGGALAvlMKDAIKPNLMQTLEGTPVF 640
                 677788999999999777466777888884443332225556666666555555555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00032
                 -TTHHHHHH............HHHHHHHHHHHHHHTHHHH.........HHHHHHHHHS----EEEE-TTS-E....................EEES.T CS
       ABATE  33 eaagllpagtaaagada..elararaLRealrallaaaaagdpppaaalaalnallaaappaprLvrhddgpvdrardwhlla..........llat.l 118
                   +g  p+ t++ + ++    +++++LRe+   l+  +   +      + a+n++++++++  +Lvr++   + +  d+   a          + a  l
  CDO72918.1 720 KMHGGGPDVTPGKPLAEtyTKEDLVTLREGCKNLAKHIENSRKFGVKVIVAINQFASDTEAELQLVREQALAAGA--DA---AvvsnhwaeggAGARaL 813
                 4555666666666665588459**************9998888888888******************99443333..22...12334566666444423 PP

                 T-- CS
       ABATE 119 Aad 121
                 A++
  CDO72918.1 814 AEA 816
                 333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6634.47
//
Query:       CDO72919.1  [L=260]
Description: hypothetical protein BN946_scf185002.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-43  148.8   0.9    2.4e-43  147.7   0.9    1.6  1  GrpE      GrpE


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.9   1.3e-47   2.4e-43       3     166 .]      63     256 ..      45     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 1.3e-47
                 ....CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC......HHH-HH........ CS
        GrpE   3 neeeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak....eneeek........ 89 
                  +e++e e   e el  +l++ e++v+++  +l +l+a++ nl++++++eke+a++fai+kfakdLL+++D l++alks++    +             
  CDO72919.1  63 AKEKDEVEVSPESELLHKLKAEEAKVADCMGRLRYLQADYLNLQRNAAREKEQARDFAITKFAKDLLETVDVLSMALKSVPkelvT----Ppegsspda 157
                 344555555555555566888999*******************************************************9866641....234467888 PP

                 ......................HHHHHHHHHHHHHHHHHHHTT-EE---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE  90 ......................slleGvemtlkqllkiLekhgvekiepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                                       +l+eGve t++ ll +L kh+v++++p+ge+FDpnlhea+ +v+ + ke+gtv+++ + GY++kdrvlR+A+V+V++
  CDO72919.1 158 assssssspsnsaektpeiylrELYEGVESTHRLLLHTLFKHNVKPYDPVGEKFDPNLHEALYQVPIPGKEPGTVFDCQKVGYMIKDRVLRAAQVGVVQ 256
                 8999*********************************************************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1457  (0.081265); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1790.43
//
Query:       CDO72920.1  [L=391]
Description: hypothetical protein BN946_scf185002.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-45  156.1   0.0      5e-26   91.7   0.0    2.2  2  tRNA-synt_2d  tRNA synthetases class II core domain (F)
    7.1e-06   26.4   0.0    1.8e-05   25.0   0.0    1.7  2  FDX-ACB       Ferredoxin-fold anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   5.2e-21   4.6e-17      16     131 ..      64     169 ..      51     176 .. 0.85
   2 !   91.7   0.0   5.5e-30     5e-26     133     245 .]     226     335 ..     218     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 5.2e-21
                   -SHHHHHHHHHHHHHHCTTCEESS.TTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHHTTS-SSEEEEEEEEEE CS
  tRNA-synt_2d  16 lhpltkvleeikeiflelgfeeve.gpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtlekkkppikiisigrvf 111
                   +hpl  +++ i++ f++  f+ ++  p v +   nfd L +p dhp R+++d++y+       +++l+LRtht+a ++ + ++ +   k +    v+
    CDO72920.1  64 SHPLGILQSLISSHFRD--FNSMTgVPPVVTPAQNFDDLGFPADHPGRSVTDSYYI-------NRDLMLRTHTSAHEVEVFARGE--RKWLLSADVY 149
                   56666666667777764..666664577889*************************.......689***************9887..69999999** PP

                   BSST-SSSB-SEEEEEEEEE CS
  tRNA-synt_2d 112 RrdavDathlaeFhqveglv 131
                   Rrd++Da+h ++Fhq+eg  
    CDO72920.1 150 RRDEIDASHYPVFHQMEGAR 169
                   *****************965 PP

  == domain 2  score: 91.7 bits;  conditional E-value: 5.5e-30
                   ETT--HHHHHHHHHHHHHHHCTST.EEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE-HHHHHHTT-.TTSEEEEEEEEHHHHHHHHHT- CS
  tRNA-synt_2d 133 denvsladlkgvleellkklfgae.vkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygi 228
                   + ++sl+ l+ +l      + + e ++vr+ ++yfpft+Ps+ev+v++    +kwlE+lg+G+v+++ l+ +g+       afGlG+eR+am+ ++i
    CDO72920.1 226 NLKLSLNSLMLTLFGNRAGVNEGEpLRVRWIEAYFPFTTPSFEVEVFF---RGKWLEILGCGVVQQQTLDRAGV-PGSISWAFGLGLERIAMILFSI 318
                   344455555555544444444444589*********************...9**********************.566789**************** PP

                   SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 229 eDiRelvendlrflrqf 245
                   +DiR ++++d rfl+qf
    CDO72920.1 319 PDIRLFWSQDPRFLSQF 335
                   **************997 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1     1e+04      41      51 ..     146     156 ..     121     159 .. 0.65
   2 !   25.0   0.0     2e-09   1.8e-05       1      41 [.     347     388 ..     347     390 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
                 EEEEESTTS-S CS
     FDX-ACB  41 fDvYrgkklae 51 
                  DvYr +++++
  CDO72920.1 146 ADVYRRDEIDA 156
                 48888887765 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 2e-09
                 -SS--EEEEEEEEEES.SS-HHHHHHHHHHHH-TTEEEEEEE CS
     FDX-ACB   1 SkfPaverDlalvvde.kveaaelleavreaagellesvqlf 41 
                 Sk+Pa+++D+++++++  ++ +++ ++vr++ag+l+++v l+
  CDO72920.1 347 SKYPACYKDVSFWLPDtGLHDNDFCDLVRDTAGDLVQDVVLV 388
                 9*************98356889*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2754.97
//
Query:       CDO72921.1  [L=431]
Description: hypothetical protein BN946_scf185002.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-47  161.0   0.0    4.2e-47  160.6   0.0    1.1  1  ThiF          ThiF family
    2.7e-29  101.1   0.0    4.2e-29  100.5   0.0    1.3  1  E2_bind       E2 binding domain
  ------ inclusion threshold ------
       0.11   12.6   0.2       0.24   11.4   0.0    1.7  2  HypA          Hydrogenase/urease nickel incorporation, metall
       0.14   12.2   0.3        0.4   10.7   0.0    1.8  2  Shikimate_DH  Shikimate / quinate 5-dehydrogenase
       0.15   12.2   2.8       0.34   11.1   2.8    1.5  1  Ecm33         GPI-anchored cell wall organization protein


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   1.2e-50   4.2e-47      11     221 ..      43     319 ..      33     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 1.2e-50
                 HHHHHHHT.SEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHHHT CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrd.skvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleelle 108
                 +  + Lr+ +k+l++GaGglG+e+l nLalsG++ ++  D  +i  + l R  + r++d+Gk+Ka vaae+++++ p+v+v+++ ++i+d+   ee + 
  CDO72921.1  43 EVKDFLRNkCKILVIGAGGLGCEILANLALSGFKDIHASDAYVIYNQMLLRSGI-RPKDVGKSKAIVAAEFIMNRVPGVKVTPYFGKIQDKD--EEYYM 138
                 4555566679******************************************88.***********************************75..7**** PP

                 T-SEEEEESSSHHHHHHHHHHHHHHT........-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
        ThiF 109 svDlVvdalDniearrlvnracvkkg........iplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct................... 180
                 +++lV+ +lD++earr++n   v+          +pli++gt+gf+gq++vi+p  t+cyeC+       +++  +p+ct                   
  CDO72921.1 139 QFNLVICGLDSVEARRWINATLVNMVdpenpeslKPLIDGGTEGFKGQARVILPTVTSCYECSLD---MLNKPTAFPICTiantprlpehciewasvle 234
                 *********************9955555555555*****************************73...45555678999999***************** PP

                 ...........................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEE CS
                 ...........................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ...........................................siagn.ipaiatttavvaglaalellkllsgkeklenslltq 221
                                                            ++++n ipaia+t+a++a  +++e+ k+  +     n+++  
  CDO72921.1 235 wprvhgdkkmdtdnpehiqwlyeialrraqefkiegvtysltqGVVKNiIPAIASTNAIIAASCCNEAFKIATSSAAYLNNYFML 319
                 *******************************************99999***********************95444445555434 PP

>> E2_bind  E2 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   1.2e-32   4.2e-29       2      81 ..     350     429 ..     349     430 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.2e-32
     E2_bind   2 vsksttLqelidsLaerpelqlkkPslstegktLymqappsLeeatrpNLekkLkeLvedgeeitvtDkklpsslslrlk 81 
                 + k++t+ +li++L+er+++q+kkPslst gk +++qapp+LeeatrpNLekk++eLv dg eitvt  +lp slslr+k
  CDO72921.1 350 IGKDWTVDRLIEMLVERQDIQIKKPSLSTPGKHIFFQAPPQLEEATRPNLEKKVSELVPDGGEITVTATTLPFSLSLRVK 429
                 5689********************************************************************99999886 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       3.3   1.2e+04      68      80 ..     192     204 ..     189     215 .. 0.66
   2 ?   11.4   0.0   6.7e-05      0.24      87     109 ..     312     358 ..     248     361 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.3
                 --EEEETTTS-EE CS
        HypA  68 pvkvrCreCgkef 80 
                 p ++ C eC+ ++
  CDO72921.1 192 PTVTSCYECSLDM 204
                 5667788887554 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.7e-05
                 H........................S-TTTSSS-EEEEESSSEEEEE CS
        HypA  87 l........................rCpkCgsadveivsGeellvks 109
                 +                         Cp Cg++ ++i+ G++ +v++
  CDO72921.1 312 YlnnyfmligtdgvysytfehekreDCPVCGGEALDITIGKDWTVDR 358
                 24555566666666666666666669****************99986 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011       0.4      11      39 ..      50      78 ..      40      82 .. 0.89
   2 ?   -2.3   0.1       1.2   4.3e+03      79     100 ..     283     304 ..     274     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEE CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkv 39
                  +++k+l+iGaG ++ +++ +L+ +g+k++
    CDO72921.1 50 NKCKILVIGAGGLGCEILANLALSGFKDI 78
                  679********************999988 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                   EEE-SSSSS-SB-HHHHHCCHH CS
  Shikimate_DH  79 visataseepilekeeveealk 100
                   +i a+as+++i+ ++  +ea k
    CDO72921.1 283 IIPAIASTNAIIAASCCNEAFK 304
                   7889999999999888777765 PP

>> Ecm33  GPI-anchored cell wall organization protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.8   9.4e-05      0.34       3      30 ..     279     305 ..     278     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.4e-05
       Ecm33   3 flKYllPALaaagaaaAaSsCkggtttI 30 
                 ++K+++PA+a  +a  AaS C  +  +I
  CDO72921.1 279 VVKNIIPAIASTNAIIAASCCN-EAFKI 305
                 89****************8887.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.48
# Mc/sec: 2721.20
//
Query:       CDO72922.1  [L=323]
Description: hypothetical protein BN946_scf185002.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-58  198.1   0.1    1.3e-58  197.9   0.1    1.0  1  RTC         RNA 3'-terminal phosphate cyclase
    9.6e-13   48.5   1.7    1.4e-10   41.6   0.1    2.3  2  RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert d


Domain annotation for each model (and alignments):
>> RTC  RNA 3'-terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.1   1.4e-62   1.3e-58       2     222 .]       9     293 ..       8     293 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 1.4e-62
                 TTTSTHHHHHHHHHHHHH---EEEESTTTTSSS-S--HHHHHHHHHHHHHHT-EEE--STT-SEEEEE------SEEEEEEESSEBHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RTC   2 gegGgqiLRtalaLsaltgkpvrIenIRanRkkPGLraqhltavrllakitnaevegaeigsteleFkPgeikageyevdigtAGsitlllqtllplll 100
                 ++ G+++LR++l+Ls+l+gkpvrI++IR+  ++PGLr+++++++rll+++tn++v   ++  t +  kPg i++g+++ +     s++++l+++++l++
  CDO72922.1   9 HFSGHHYLRHRLVLSILSGKPVRIDKIRSDDQNPGLRDYEVSLLRLLERVTNGTVIEISVTGTAILLKPGIIAGGSVTHECPLSRSVGYFLEPVIMLAP 107
                 578*******************************************************99777*******999************************** PP

                 TSSS-EEEEEEEBSBBTTS--HHHHHHTHHHHHHHHT.-E.EEEEEEE--BTTTB-EEEEEEEE-.-S---EB.......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
         RTC 101 fakkpseltlkGgTnvsaapsvdylktvllpllkrfgvle.lelelkkrGfypkGgGevelevepskklkpie.......................... 172
                 fakkp++ltlkG+T ++++ svd+++tv+lp+l+ fgv + lel++kkrG +p GgGev++ ++ +k++k+++                          
  CDO72922.1 108 FAKKPLSLTLKGITTDEHDLSVDIIRTVTLPHLQLFGVSDgLELRIKKRGSAPLGGGEVQFLCPIVKQVKTLDfvdpgrikrirgisspgyalsllaes 206
                 *************************************988***********************8777788888888*********************** PP

                 ....................................BSS-HHHHHHHHHHHHHHT..-EEEEESS--HHHHHHHHHHHHHSS-EEEE CS
                 ....................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RTC 173 ....................................acvDehlqdqlilfmaLak.gksrirvaeltlhtetairvieqflgvkfkv 222
                                                     ++vD+h+q++++l+m+L +   +r r +e t  t++++r ++q +g+ fk+
  CDO72922.1 207 ttgamhsaeaiskpgvppeeiallaarsllaeirrgGAVDRHHQSLVLLMMVLGSeDVGRCRLGEPTARTIQFLRDMKQAFGTAFKI 293
                 ******************************************************954478999**********************97 PP

>> RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.2   0.00081       7.3       1      13 [.     182     194 ..     182     195 .. 0.92
   2 !   41.6   0.1   1.5e-14   1.4e-10      57     102 ..     195     239 ..     193     240 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00081
                 -S----SEEEEEE CS
  RTC_insert   1 vdrGrvkrirGva 13 
                 vd+Gr+krirG++
  CDO72922.1 182 VDPGRIKRIRGIS 194
                 69*********97 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 1.5e-14
                 S-EEEEEEEEE-T.TS-EEEEEEEE-TT--HHHHHHHHHHHHHHHH CS
  RTC_insert  57 spGfgisLvaetttegvllgaealgekgvppedvGeeaaeeLleei 102
                 spG+++sL+ae+tt g++ +aea+++ gvppe+++  aa+ Ll+ei
  CDO72922.1 195 SPGYALSLLAESTT-GAMHSAEAISKPGVPPEEIALLAARSLLAEI 239
                 8************6.******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2250.89
//
Query:       CDO72923.1  [L=571]
Description: hypothetical protein BN946_scf185002.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-90  303.0   3.7    1.6e-48  165.5   1.1    3.4  4  NPR2      Nitrogen permease regulator 2
  ------ inclusion threshold ------
       0.44   10.8   2.3       0.32   11.2   0.1    1.8  2  ATG16     Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> NPR2  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.1   2.7e-29   2.4e-25      38     131 ..      26     118 ..      11     122 .. 0.94
   2 !  165.5   1.1   1.8e-52   1.6e-48     158     301 ..     121     263 ..     117     270 .. 0.96
   3 !   47.1   0.0   1.6e-16   1.4e-12     343     401 ..     270     328 ..     264     338 .. 0.91
   4 ?   -2.7   0.0       0.2   1.8e+03     407     430 ..     521     544 ..     495     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 2.7e-29
        NPR2  38 ealFeFdtvknyviPkpqlcnrllslkinkykvlgyPvnienekYsRneFtFnfafvidydesdttpYesvvkrlgrllrvlEeqnkfLskedk 131
                    F+Fd + +yviP   lc rl++   + +++lg+Pv +++e+Y Rn F +n++fv++ + +d ++Ye+v ++++r+l+  E+++ fLs++  
  CDO72923.1  26 RFFFNFDDISKYVIPPRALCGRLVTCATKGHRILGFPVRLDEEYYPRNYFLYNVCFVFERT-ADLSCYEPVARKVSRVLTTCEKESRFLSSPRS 118
                 567*********************************************************9.****************************9765 PP

  == domain 2  score: 165.5 bits;  conditional E-value: 1.8e-52
        NPR2 158 sieslieqileDLnnysEcviplddsnsvdlKLfPilpePvnikayqvPiatvklsslvdvnwDltlkkilpyinGinsvkriaeladadlsLtkqciq 256
                  +++++eq++eDLn ysE+ ip+d  ns++lK+fP +p+P+++k +qvP+a ++l++ ++ nwDlt++ki pyi+G n v ria+la+ d+ L + +i 
  CDO72923.1 121 AVHAILEQLYEDLNSYSETSIPIDPFNSIELKIFPFYPNPPPVKDWQVPLALINLTNRIEPNWDLTIVKICPYIDGTNHVSRIARLANCDPNLARLAIS 219
                 6999*********************************************************************************************** PP

        NPR2 257 hLlyYkcielldiFqfsniYaptneigdFlkdegeiadeCqayvv 301
                 hLlyY+ i l+diFq+sn+Y   ++i+ +l+de++i +eC  yv+
  CDO72923.1 220 HLLYYQVIMLIDIFQYSNMYTLRKSIQ-WLADESHIMEECGPYVT 263
                 ***********************9996.778888*********97 PP

  == domain 3  score: 47.1 bits;  conditional E-value: 1.6e-16
        NPR2 343 pskttlfrLyrslkqgqtvkeWvlqekkllagiDvrRliqFGvlkgliyrvhkypilns 401
                 p+  +l++Ly  +k g+tv++W+ +   +  giDvrR+  FGv+kg+++rvh++p l s
  CDO72923.1 270 PDWPKLLHLYSRFKAGKTVRDWMEEYDVHKLGIDVRRFTSFGVIKGFLRRVHRWPTLLS 328
                 556689************************************************98876 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.2
        NPR2 407 tllksldglkslDellkelkvkee 430
                  ll  ldg ++ De++++++v   
  CDO72923.1 521 ELLPLLDGEHHTDEICTRFEVGWP 544
                 578889***********9988755 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.38   3.4e+03      49      83 ..     359     394 ..     337     398 .. 0.48
   2 ?   11.2   0.1   3.6e-05      0.32       4      51 ..     418     466 ..     416     494 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.38
       ATG16  49 ks.sksskksakekeasasqsnskqsakiqsleqkl 83 
                 ++ +++++  ++ ++ +a++++++ +a+i+s  +++
  CDO72923.1 359 PPnPSPPQPRTEPDSLRARSRAPEAQATIASAGAEI 394
                 223222222222222222224566777777766665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.6e-05
       ATG16   4 aqLreRdarqekafaeliqaynrLldrtsaleaenaklekaaasaks..s 51 
                 + Lr Rd r ++++   +q+ +rL  r++a ++++++++ + a+++   s
  CDO72923.1 418 EMLRSRDGR-KPLHDRAYQTMSRLYGRAEAAAQQKSTMRHSHAATRYisS 466
                 679*****9.****************************776655554532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4022.47
//
Query:       CDO72924.1  [L=692]
Description: hypothetical protein BN946_scf185002.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-37  129.2   0.0    3.7e-37  128.3   0.0    1.4  1  GCIP          Grap2 and cyclin-D-interacting
    2.1e-06   28.4   0.1    4.3e-06   27.4   0.1    1.5  1  Torus         Torus domain
    1.5e-05   24.8   2.7    1.5e-05   24.8   2.7    2.3  2  zf_CCCH_4     Zinc finger domain
    0.00065   19.5   1.3     0.0015   18.4   1.3    1.6  1  zf-CCCH       Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0015   18.8   0.1     0.0042   17.3   0.1    1.7  1  zf-CCCH_3     Zinc-finger containing family
  ------ inclusion threshold ------
      0.052   13.4   1.5       0.13   12.1   1.5    1.7  1  zf-CCCH_4     CCCH-type zinc finger
      0.091   13.3   1.5       0.23   12.0   1.5    1.7  1  zf-CCCH_2     RNA-binding, Nab2-type zinc finger
       0.11   12.4   0.0       0.78    9.6   0.0    2.4  2  RRM_occluded  Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   1.7e-40   3.7e-37       5     260 ..     365     617 ..     362     618 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 1.7e-40
                 HHHHHHHHHHHHHHHTTSSS---HHHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH--.--------------HHH CS
        GCIP   5 laklvskeaTklslllskpelPsveelqellesifkalsgllliyhglpkgaGatLrkevrsavkevvdsvaqLleeivssepsqskeeetlistGvVW 103
                 l  l++ ++Tkl+l+l +p +P+++++   ++++  a+ +l  ++++l + +G+tL++  r +++++ d v++L   ++++      +ee+l++tG+V+
  CDO72924.1 365 LLNLIYTSTTKLTLVL-RPTAPAPTAALGPISDLGTAVTSL-ATCATLFDLYGSTLSSFARRSARDICDAVNSLSTDFIDN-----SGEEYLVRTGTVH 456
                 56789***********.***********************9.6699*********************************96.....99*********** PP

                 HHHHTT.TTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......S------------------TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        GCIP 104 eaCdal.kklpkdNktAilraieevlglvkDaleEmkellee..edeeedededdldddedeergnqdrklseeekevikavlkllkatvallkklsrs 199
                 + ++++  +lp+dN++A+ ++++  +g+++D + +++ ++e+  e+ +    +ddldd++ e +  + +kl+e e++ +k+   l++  ++l+k++ ++
  CDO72924.1 457 DLVEKArRELPTDNLAAVKTRLKDDRGMLEDSFADINAMVEDsaEEGDDGTLDDDLDDEWNELGFGSTKKLTEVELQRVKK--PLVRFGTLLHKRIVSD 553
                 ******99**********************************8877777788999*******99999*******9999996..89***********999 PP

                 HHH...H--TT...-HHHHHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHH CS
        GCIP 200 ite...egkkdskeqvaqldklldlskeiseqvDdLaaslYPpqnisavkaqvekLasvlkkvl 260
                 i +    ++  s   +a ld l + s++++ ++++L+a+lY+pq+  a++++v+ +a+ + +++
  CDO72924.1 554 ILShtsISQPGSGALIAALDALPSRSHAVVLALEELVATLYAPQKPPALRSAVATFADAMTQMH 617
                 998443333334556899****************************************999985 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.9e-09   4.3e-06      66     105 ..     152     192 ..     115     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.9e-09
                 HSTT--B-HHHHHT--SSGGG-SSB-S---SS----TTB.- CS
       Torus  66 kekesyfClfFarGlCakGkkCeylHrlPteedlkekkv.D 105
                 k+++  +C f+ +G C +G  C y H++P +++l+++++ D
  CDO72924.1 152 KRNRPQICSFYVKGECNRGDACPYRHEMPVQNELSKQNIqD 192
                 3445689**************************77665535 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   2.7   6.9e-09   1.5e-05       1      19 []     159     177 ..     159     177 .. 0.99
   2 ?   -1.0   0.1      0.92   2.1e+03      11      16 ..     657     662 ..     656     662 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 6.9e-09
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C f+++G C++Gd+C+++H
  CDO72924.1 159 CSFYVKGECNRGDACPYRH 177
                 ******************* PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.92
   zf_CCCH_4  11 kGdkCr 16 
                 kG+kC+
  CDO72924.1 657 KGTKCP 662
                 9****7 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.3   6.7e-07    0.0015       4      25 ..     157     177 ..     155     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.7e-07
                 HCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   4 elCrffmrtGyCkyGdrCkFaH 25 
                  +C f+ + G+C++Gd+C++ H
  CDO72924.1 157 QICSFYVK-GECNRGDACPYRH 177
                 58******.**********988 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.9e-06    0.0042       4      28 ..     155     179 ..     152     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
   zf-CCCH_3   4 kgddcyffyystctkGdscpfrhee 28 
                 + + c f+    c++Gd cp+rhe 
  CDO72924.1 155 RPQICSFYVKGECNRGDACPYRHEM 179
                 5567*******************85 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.5   5.7e-05      0.13       2      22 .]     158     178 ..     157     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C +++kG C  Gd C ++H+
  CDO72924.1 158 ICSFYVKGECNRGDACPYRHE 178
                 699*****************6 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5    0.0001      0.23       1      17 [.     158     177 ..     158     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 +C f+ +  C +++ Cp++H
  CDO72924.1 158 ICSFYVKgeCnRGDACPYRH 177
                 7******************* PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00035      0.78      14      68 ..     236     296 ..     224     301 .. 0.79
   2 ?   -2.0   0.0       1.5   3.5e+03      67      77 ..     449     459 ..     446     461 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00035
  RRM_occluded  14 nkariralveek.....egeikkivLvpdheGAivefkdekiagkasLaL.dgsefegkkl 68 
                   +++ +r+ v +        ++k +v v++ ++A+v  kd+++a  a++a  +g e++g+++
    CDO72924.1 236 TEESVRTRVLQSlpgvqPSQLKSVVYVAKSRCAFVNWKDRATAELAAMAWsNGLEIDGETV 296
                   55666666666666664489****************************9747889998875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
  RRM_occluded  67 klrcGtvkdLk 77 
                    +r+Gtv+dL 
    CDO72924.1 449 LVRTGTVHDLV 459
                   579******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4601.35
//
Query:       CDO72925.1  [L=574]
Description: GMC oxidoreductase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-42  145.0   0.0    7.9e-42  143.6   0.0    1.6  1  GMC_oxred_N    GMC oxidoreductase
    8.6e-27   94.4   0.0    1.4e-20   74.3   0.0    2.4  2  GMC_oxred_C    GMC oxidoreductase
    3.4e-05   23.6   3.6    0.00051   19.7   2.3    2.6  2  DAO            FAD dependent oxidoreductase
     0.0014   18.9   0.2     0.0037   17.5   0.2    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0027   16.8   0.1     0.0044   16.1   0.1    1.3  1  Lycopene_cycl  Lycopene cyclase protein
     0.0081   15.3   2.0      0.048   12.7   1.0    2.1  2  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.044   13.0   0.2       0.13   11.4   0.1    1.8  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.066   12.4   0.1       0.14   11.4   0.1    1.4  1  Thi4           Thi4 family
      0.074   11.7   0.2       0.11   11.1   0.2    1.2  1  HI0933_like    HI0933-like protein


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   3.9e-45   7.9e-42       1     284 [.      16     300 ..      16     303 .. 0.91

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 3.9e-45
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl..imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpa 96 
                  +d++v+ggG+ag v+AaRLsedps+ v v+eag  + + +   ++ +  + l + ++++a+++ p+k  n+r ++ p+Gk++GG+s+ N   y R+ a
   CDO72925.1  16 FDYIVVGGGTAGLVIAARLSEDPSKVVGVIEAGNWDPDVNaiNIPGLGGSILGNPRYDWAFMSVPQKYANNRPVFQPRGKAVGGSSMLNLLGYSRAAA 113
                  69************************************998555555566667789****************************************** PP

  GMC_oxred_N  97 adldeWeeeaglegwssdevlpafkkvetaqale............sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk.hqcGvcl 181
                    +d  e+  g++gw++ e+l+++kk et+  +             + +hg +g++  ++  +  +pl k +l+  e+ G+p + d +++ +  Gv  
   CDO72925.1 114 REYDAIEAL-GNPGWNWSEFLKYLKKTETTLLPSelakehglvaadATYHGDAGPII-KQYPTWFNPLHKPFLETLEKIGIPKNADPDSGvNMGGVTS 209
                  *****9999.******************9988889999******9999*******95.599999******************9999999889999999 PP

  GMC_oxred_N 182 lgvtcrtgarqstarawLrpalerpnleiltgakaekiil..egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkev 277
                  + ++  +  r+ +a+ +  p   r+nl++lt+ k+ kii+  +    r++GVe+ + ++      +a+kevv+aaG            +G+++ L ++
   CDO72925.1 210 YMTVDSDATRSYSASGYYLPIAGRQNLVLLTNSKVAKIIFreDTSPLRVIGVEFINVDKR--YSATARKEVVLAAG------------IGNKDILSKH 293
                  998999999*******************************7644567************9..999*********97............5555555555 PP

  GMC_oxred_N 278 gvdvvvd 284
                  g++v +d
   CDO72925.1 294 GIKVLLD 300
                  5555555 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   6.9e-24   1.4e-20      10     120 ..     420     526 ..     416     527 .. 0.91
   2 !   17.7   0.0   1.9e-06    0.0039     120     144 .]     543     567 ..     533     567 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 6.9e-24
                  STT-TCCEEEEE--TT-SHHHHHHHHHHHH.HHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STCGCBSB CS
  GMC_oxred_C  10 sssdptgaplidpnylsdprdlaalvealk.aarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadpkdsVV 105
                  s +dpt+ap+idpny+s+p dl++l+ a+k ++ k+ +++++ dv ++ +tp++      + ++sd+ale+++k+++  ++HplGt++M ++++ +VV
   CDO72925.1 420 SAADPTAAPAIDPNYFSNPLDLEMLLNAFKfTLDKLYKTSPFgDVVRKIVTPRP------EVAASDAALEEYIKDNCGCVYHPLGTASMLPQEDGGVV 511
                  458***************************555667777777888888888888......79999********************************* PP

                  -TTSBBTT-CSEEE- CS
  GMC_oxred_C 106 DsdlrvhgvdnLrVv 120
                  D++l+v+g+ n+rVv
   CDO72925.1 512 DPELKVYGTVNVRVV 526
                  **************8 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.9e-06
                  -SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C 120 vDaSvfPsapganptltilalAeka 144
                  vDaSv+P  ++a++++t++a Aeka
   CDO72925.1 543 VDASVIPLELSAHTQATVYATAEKA 567
                  8**********************97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.3   2.6e-07   0.00051       1     261 [.      17     334 ..      17     347 .. 0.60
   2 ?   -2.5   0.0       1.5     3e+03      66     155 ..     480     566 ..     473     569 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.6e-07
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSEEEEESSS....STHHSTH...........................HHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrnsgllhsgl....rylpeas...........................elarlsleal 65 
                 d +++GGG +Gl +A  L++ +   V ++e+g+         n   l +++    r + +a                             l+  s++a 
  CDO72925.1  17 DYIVVGGGTAGLVIAARLSEDPskvVGVIEAGNWDP-DVNAINIPGLGGSIlgnpR-YDWAFmsvpqkyannrpvfqprgkavggssmlNLLGYSRAAA 113
                 789*****************9889********7755.3444443333333333322.444446677777888899***********9887778888999 PP

                 HHHHHHHHHHSSTTSEEEEEEEEEES.S....HHHHHHHH........................HHHHHH.HHTTTTE.EEEEHHHHHHHS.TTST.TT CS
         DAO  66 eelreleeelgididyrrtGllslaa.d....eeeleald........................kllall.leaglda.elldaeevrele.palp.gl 131
                 +e++++e+  +   ++ ++  l +   +                                    k++  + +++  +  e l++  + + + p  + g+
  CDO72925.1 114 REYDAIEALGN--PGWNWSEFLKYLKkTettlL------PselakehglvaadatyhgdagpiiKQYPTWfNPLHKPFlETLEKIGIPKNAdP--DsGV 202
                 99999999866..55666666666531212220......122334444444445444555544433333332222222233444223322214..2433 PP

                 S.EE....EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE..EEEE...TCEEEEE...EECT.EEEEEEEE.EEE--GGGHH.HH.HTT..C CS
         DAO 132 l.ga....lfypdtgqvdpakltaalaraaealGveilegtevtgl..eeed...gkvwgve...rttp.gendaada.vVnaaGawsd.ll.gll..k 211
                   g+    + ++++++   + +  +++  a ++   +l++++v ++  + ed    +v gve   ++++  ++  a++ vV+aaG++ + +l + +  k
  CDO72925.1 203 NmGGvtsyMTVDSDAT-RSYSASGYYLPIAGRQNLVLLTNSKVAKIifR-EDtspLRVIGVEfinVDKRySAT--ARKeVVLAAGIGNKdILsK-HgiK 296
                 3344232144444344.777777778888999999**********7543.33578889999888544444443..4668*******98864432.3244 PP

                 TT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTS CS
         DAO 212 el.dlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdg 261
                  l dlp      +v+v+          + i+p  et+dd+ +++v++r  +
  CDO72925.1 297 VLlDLP----NDHVYVY-S-------VYEIDPSIETVDDALVPEVMARQ-Q 334
                 442333....4444444.2.......24556666688888888888875.3 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTE.E.EEEHH.HHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHH CS
         DAO  66 eelreleeelgididyrrtGllslaadeeelealdkllallleaglda.e.lldae.evrelepalpgllgalfypdtgqvdpakltaalara 155
                 + l+e+ ++ +  + y++ G+ s+   +e+   +d +l+  +  ++++ + +++++  v+++e +    + a + p +  +++++ + a a++
  CDO72925.1 480 AALEEYIKD-NCGCVYHPLGTASML-PQEDGGVVDPELKVYGTVNVRVvRpIIRRRlHVADWERQ----VDASVIPLELSAHTQATVYATAEK 566
                 556788887.667889999998887.333345577777776556665556567773257777752....344555665666666666666555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.9e-06    0.0037       1      28 [.      20      48 ..      20      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekr 28
                   +vG+G +Glv+A++L+++  + v ++e++
     CDO72925.1 20 VVGGGTAGLVIAARLSEDpSKVVGVIEAG 48
                   8****************966668888877 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.2e-06    0.0044       1      34 [.      17      49 ..      17      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   D +v+G+G Agl +Aarl ++ p   v++iea++
     CDO72925.1 17 DYIVVGGGTAGLVIAARL-SEDPSKVVGVIEAGN 49
                   789***************.7888889999*9986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.0   2.4e-05     0.048       1      26 [.      17      42 ..      17      49 .. 0.86
   2 ?    1.0   0.0     0.087   1.7e+02     158     201 ..     238     284 ..     229     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EE CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkva 26
                   D iV+G+G AGL+ A++++e   kv+
     CDO72925.1 17 DYIVVGGGTAGLVIAARLSEDPSKVV 42
                   88******************999876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.087
                    EEESEEEEEEEECTT....EEEEEEEEETTTTCEEEEEES.EEEE---- CS
  FAD_binding_2 158 fqerteadeLivedg....rvtGavvenpesgrevrirak.avvlatgG 201
                    ++++ +++++i +++    rv G+++    ++r    +a+  vvla+g 
     CDO72925.1 238 LLTNSKVAKIIFREDtsplRVIGVEFI-NVDKRYS-ATARkEVVLAAGI 284
                    6778888888886666999****9999.3444444.5566699999984 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.7e-05      0.13       1      29 [.      16      44 ..      16      62 .. 0.86
   2 ?   -1.7   0.0      0.67   1.3e+03      96     114 ..     271     289 ..     222     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.7e-05
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlv 29
                 +d++v+GgG AGl  a +l++   kv+ v
   CDO72925.1 16 FDYIVVGGGTAGLVIAARLSEDPSKVVGV 44
                 589******************98888765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.67
                  EEEEESEEEE---EEE-BC CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdl 114
                     a +++vlA G  ++d+
   CDO72925.1 271 SATARKEVVLAAGIGNKDI 289
                  3334478888888766665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.8e-05      0.14      16      49 ..      14      47 ..       5      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.8e-05
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailer 49
                 e D ++vG+G++GL  a  l+++p   v ++e+
  CDO72925.1 14 TEFDYIVVGGGTAGLVIAARLSEDPSKVVGVIEA 47
                5789********************9999999996 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   5.6e-05      0.11       2      32 ..      17      48 ..      16      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
                 SEEEE--SHHHHHHHHHHHHT.T--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakr.gkrVllleka 32
                 d iv+GgG AGl  A+++++   k V ++e++
   CDO72925.1 17 DYIVVGGGTAGLVIAARLSEDpSKVVGVIEAG 48
                 78*************99966505556688876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3937.48
//
Query:       CDO72926.1  [L=284]
Description: hypothetical protein BN946_scf185002.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-05   22.7   0.0    7.9e-05   22.1   0.0    1.2  1  Pkinase         Protein kinase domain
    0.00031   19.6   0.0    0.00045   19.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
     0.0011   18.9   0.2     0.0013   18.7   0.2    1.2  1  APH             Phosphotransferase enzyme family
     0.0014   18.0   0.0     0.0023   17.3   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.17   11.5   0.0    1.2  1  RIO1            RIO1 family
        0.2   10.9   0.0       0.27   10.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.6e-08   7.9e-05     101     146 ..     171     223 ..     147     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.......EEE-SGTTSE CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekge.......lKitDFGlak 146
                 +++ +++l+gl+ lH++g++H D+ + N+L+ +++        + ++D++ + 
  CDO72926.1 171 EEMREKVLTGLSRLHENGVVHGDVRDVNVLVRNEDApsesdrdVLLIDWDWSD 223
                 567789**************************633345555569999988765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.5e-07   0.00045     314     369 ..     176     232 ..     163     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.5e-07
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitds..kkegerkglLiDLDlakelsddsses 369
                      +++g+ +L+ + g++H D+   N+l+ ++   +e++r  lLiD D+   ++++++ +
      CDO72926.1 176 KVLTGLSRLH-ENGVVHGDVRDVNVLVRNEdaPSESDRDVLLIDWDWSDPTATVQNPA 232
                     57899*****.****************966446679**********998777766665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   4.3e-07    0.0013     141     196 ..     164     222 ..      38     247 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.3e-07
                 TCC..HHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC.........TTEEEEE---TT- CS
         APH 141 lld..lleeleeqvlaalaallpg....elptvllHgDlhpgNllvd.......pddgrvtGviDfeda 196
                 +++  llee++e vl        +      + +++HgD +  N+lv+       +d + +  +iD++ +
  CDO72926.1 164 FQPilLLEEMREKVL--------TglsrLHENGVVHGDVRDVNVLVRnedapseSDRDVL--LIDWDWS 222
                 111333455555433........33444557*********************77666677..****955 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.6e-07    0.0023     122     173 ..     172     226 ..     162     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.6e-07
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqee...eeeaeiwliDldkarlrl 173
                 ++ ++v +  ++lh+ gv H+d+   n+l+++e+   e ++ + liD d + + +
  CDO72926.1 172 EMREKVLTGLSRLHENGVVHGDVRDVNVLVRNEDapsESDRDVLLIDWDWSDPTA 226
                 56677888899**********************9999999********9887665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.6e-05      0.17     108     143 ..     171     205 ..     166     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.6e-05
                 HHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTE CS
        RIO1 108 eelyeevleemrklykeaglvHaDLSeyNvlvdedk 143
                 ee+ e+vl  + +l  e+g+vH+D+ + Nvlv +++
  CDO72926.1 171 EEMREKVLTGLSRLH-ENGVVHGDVRDVNVLVRNED 205
                 677888888877776.****************8763 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.9e-05      0.27     107     140 ..     172     205 ..     121     214 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.9e-05
                  HHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT CS
  Pkinase_Tyr 107 sfalqvAkGmeyLeskklvHrdlaarNvLlsenk 140
                  ++  +v  G++ L+++ +vH d++  NvL+++++
   CDO72926.1 172 EMREKVLTGLSRLHENGVVHGDVRDVNVLVRNED 205
                  56678889**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2075.17
//
Query:       CDO72927.1  [L=282]
Description: hypothetical protein BN946_scf185002.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    9.7  27.3       0.11   12.9   5.3    3.9  4  PBP1_TM    Transmembrane domain of transglycosylase PBP1 at N


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   2.0    0.0066   1.2e+02      10      40 ..       8      35 ..       5      54 .. 0.43
   2 ?    6.7   2.7   0.00054       9.6      16      45 ..      51      83 ..      43     111 .. 0.64
   3 ?   12.9   5.3   6.2e-06      0.11      12      65 ..     127     180 ..     121     188 .. 0.70
   4 ?   -1.6   0.1      0.21   3.7e+03      10      24 ..     188     202 ..     178     210 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0066
     PBP1_TM 10 GRkGkkakakparkkasrrrrrdddyddeyd 40
                G++   ++ +p++++ +r   + +d dd  +
  CDO72927.1  8 GKQSLTSESRPTKRRIQR--IESEDEDD-AE 35
                333344444444444333..22333333.11 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00054
     PBP1_TM 16 akakparkkasrrrrrdddydd...eyddeedD 45
                +k ++a + asr +r+ddd +d   ++d + +D
  CDO72927.1 51 KKLRTAGRSASRGSRYDDDAEDvdvDIDGDIED 83
                234566677788888888888854444444444 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 6.2e-06
     PBP1_TM  12 kGkkakakparkkasrrrrrdddyddeyddeedDdd.dddeeeevprkgkkkkpp 65 
                 kGk +++k +r+++     +d+++dd     +dD+d d + +  +++kg+k+k  
  CDO72927.1 127 KGKSSTKK-PRRQVVWTDDEDEEFDDPEVMVTDDEDfDSEPDYSSSKKGHKAKGT 180
                 78888555.5666666688899999955566777774556666668888777644 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.21
     PBP1_TM  10 GRkGkkakakparkk 24 
                 G kGk  k+k  ++ 
  CDO72927.1 188 GAKGKTGKEKDDKEI 202
                 445555544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1893.08
//
Query:       CDO72928.1  [L=443]
Description: hypothetical protein BN946_scf185002.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-29  100.1   0.0    1.3e-28   99.5   0.0    1.3  1  OGG_N     8-oxoguanine DNA glycosylase, N-terminal domain
    1.4e-14   54.5   0.0    2.4e-14   53.7   0.0    1.4  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
  ------ inclusion threshold ------
      0.045   13.7   0.1       0.54   10.2   0.0    2.4  2  HHH       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> OGG_N  8-oxoguanine DNA glycosylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   2.2e-32   1.3e-28       2     121 .]      13     139 ..      12     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 2.2e-32
                 EEES-SS--HHHHHCSSS-SSEE........E-.TTS-EEEEETTEEEEEEEETTEEEEET--.............HHHHHHTHHHHTTTTS-HHHHHH CS
       OGG_N   2 llvskeeldlkktLkcGQsFrWk........kt.ekteyvgvlgdrvveLkqeeddllyrtlesesstkasseeakeeeteeilrdYfnLdvdleelyk 91 
                 l+++ ++l+l ++LkcGQsFrW         ++  ++ey+ +l+drvv+L+q +d l+yr + +       + e++e et  ++rdYf+L++dl ely+
  CDO72928.1  13 LPLPITQLSLAAVLKCGQSFRWSilplppseRHgLDNEYRLCLRDRVVCLRQSPDALFYRSVFPP--GVPGEMETREAETLAWIRDYFQLEIDLVELYR 109
                 6778899******************9999874433446*************************76..6889999999********************** PP

                 HHTT.SHHHHHHHCCTTT-------HHHHH CS
       OGG_N  92 ewskkdplfkksadkftGiRllrqdpwEcL 121
                 +w  +dp f + + +f GiR+lrqdp+E+L
  CDO72928.1 110 QWGTADPVFDRLQARFEGIRMLRQDPFENL 139
                 ****************************98 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0     4e-18   2.4e-14       1      92 [.     140     301 ..     140     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 4e-18
                 HHHHHHTTS-HHHHHHHHHHHHHHHS.....................HCSHHHHHHSH.HHHHHHHHTTSTTHHHHHHHHHHHHHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg.....................fptpedladad.eekLrelirelGfyrrKakyikelArilv........... 66 
                 +s+i+s++++++r+++++++l++ +                      fp p +la+ +  +kLr+l    Gf+ ++a  i+ +A +lv           
  CDO72928.1 140 ISFICSSNNNISRITKMVKSLCQHYSpalvtlphpsgptlpeetyhpFPPPSALARSEvSAKLRSL----GFG-YRADFIQRTAAMLVethgvgwdakk 233
                 79********************************************************9*******....***.************************* PP

                 ...........................................S-SSS--TTSHHHHHHHHHHTTSSSS CS
                 ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ...........................................gkpdvlivvDvhvrrilkrlrsikek 92 
                                                            +k+ ++i+vD+hv +i+ ++++++  
  CDO72928.1 234 lmepseewlmtlrslstsearaellkfvgvgrkvadcillmslDKK-EVIPVDTHVYQIAIKYYGLNSP 301
                 ******************************************8655.59*************9999763 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.11   6.4e+02       4      16 ..     233     245 ..     231     246 .. 0.86
   2 ?   10.2   0.0   9.1e-05      0.54      12      29 ..     256     273 ..     253     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.11
                 HHHTSSHHHHHTS CS
         HHH   4 glipasreeLlal 16 
                  l++ s+e+L++l
  CDO72928.1 233 KLMEPSEEWLMTL 245
                 57899******97 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.1e-05
                 HHHTSTT-SHHHHHHHHH CS
         HHH  12 eLlalPGVGpktAeaIls 29 
                 eLl+  GVG+k+A++Il 
  CDO72928.1 256 ELLKFVGVGRKVADCILL 273
                 666666**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3040.81
//
Query:       CDO72929.1  [L=534]
Description: hypothetical protein BN946_scf185002.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-80  268.3   0.0    5.8e-80  267.7   0.0    1.2  1  NMT_C           Myristoyl-CoA:protein N-myristoyltransferase,
    8.3e-66  220.8   0.0    1.6e-65  219.8   0.0    1.4  1  NMT             Myristoyl-CoA:protein N-myristoyltransferase,
    2.9e-05   24.2   0.0    0.00053   20.1   0.0    2.3  3  Acetyltransf_9  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.13   10.6   4.7       0.19   10.1   4.7    1.1  1  DUF3292         Protein of unknown function (DUF3292)
        1.8    8.5   5.6          3    7.7   5.6    1.3  1  GRA6            Granule antigen protein (GRA6)


Domain annotation for each model (and alignments):
>> NMT_C  Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.7   0.0   1.6e-83   5.8e-80       2     195 ..     316     529 ..     315     533 .. 0.94

  Alignments for each domain:
  == domain 1  score: 267.7 bits;  conditional E-value: 1.6e-83
                 TTSS--BTTS-HHHHHHHH---SS-SST..TEEE--CCCHHHHHHHHHHHHTTSSEEEE--HHHHHHHHC-SST...........TSBTTTEEEEEEEE CS
       NMT_C   2 vgFsalprnstlarlvklyklpeetktk..glremeekDveavtellekylkrfdlaqvfseeeveHwllskkk...........kreeqvvwsYVved 87 
                 v+F+ +p+n+tlar+++l+k+p+++++   glreme++Dv++v++l+++y++rf++++v+seeev+H++ls+ +           +re qvvw+YVve+
  CDO72929.1 316 VRFTGVPPNMTLARMIRLHKVPDRPRLLehGLREMEDRDVPQVANLFNRYMQRFQMVPVMSEEEVRHQFLSGLGegprgadswkhRREGQVVWTYVVEN 414
                 89***********************98445*****************************************88799********999************ PP

                 TTS.EEEEEEEEEE--EEETT-SS-SEEEEEEEEEEE........ECCCTTHHHHHHHHHHHHHHHHHHCTESEEEEESSTTGGGCTTTTT-EEEEEEE CS
       NMT_C  88 eetkkitDfvSFYslpstvlknpkhktlkaAYlfyya........stetkklkkrlkeLvkdalilakkakfDvfnaltlmdnklfleelkFgagdgkL 178
                 ++t+k+tDfvSFYslpst+++++k++ l+aAYlfyy         ++e+ +lkkrl+eL++dal++ak+a+fDvfnaltlmdn  +l++lkFg+gdg L
  CDO72929.1 415 PKTHKVTDFVSFYSLPSTIMNSDKYNLLNAAYLFYYGtetafepgAEESGRLKKRLEELINDALVIAKSADFDVFNALTLMDNVCILQDLKFGQGDGLL 513
                 *************************************666666654444899*********************************************** PP

                 EEEEETEEE.-..-SB- CS
       NMT_C 179 nYYLyNyrvapiaggvk 195
                 n+YLyN+r+ap+ag ++
  CDO72929.1 514 NFYLYNWRTAPLAG-MT 529
                 ***********987.44 PP

>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.8   0.0   4.6e-69   1.6e-65      33     160 .]     174     301 ..     170     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 219.8 bits;  conditional E-value: 4.6e-69
                 HHHHHHHHHHHHHSSCTTTSTEEE---HHHHHHHCTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHH CS
         NMT  33 eelkevyelLsenYvedddamfrfkyskeflkWalkppgykkewhvgvrvkkskkLvafisaipvklrvrkkvlklveinfLcvhkklRskrlapvlik 131
                 eel+e+yelLs+nYveddda+frf+ys+efl+Walkppgy+k+wh+gvrv+++kkLvafisa+p+++rvr+++++++e+nfLcvhkklRskrl+pvlik
  CDO72929.1 174 EELRELYELLSANYVEDDDASFRFQYSAEFLSWALKPPGYHKDWHIGVRVSSTKKLVAFISAVPIRVRVRENQFDASEVNFLCVHKKLRSKRLTPVLIK 272
                 689************************************************************************************************ PP

                 HHHHHHHTTT--EEEEEESSTSSSESEEE CS
         NMT 132 EitRrvnlkgifqavytagvvlpkpvstC 160
                 E+tR+++lkg+fqa+yt+gv+lp+pvstC
  CDO72929.1 273 EVTRQCHLKGVFQALYTGGVLLPTPVSTC 301
                 ****************************9 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-07   0.00053      25     106 ..     191     282 ..     172     291 .. 0.81
   2 ?   -4.0   0.0       4.1   1.5e+04      54      76 ..     298     321 ..     295     333 .. 0.80
   3 ?    1.1   0.0      0.11     4e+02       2      23 ..     347     368 ..     339     393 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-07
                     --H..........HHHHHHHHHHTTSEEEEEEE..TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT CS
  Acetyltransf_9  25 espl.......e.eireyfrklleesrvlgaed..ngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreeg 106
                     +++        e   ++ + + + +++++g++     +lv+ + ++p +++v++++++a  v   +v+ + r + +   L++++ ++++ +g
      CDO72929.1 191 DDASfrfqysaEfLSWALKPPGYHKDWHIGVRVssTKKLVAFISAVPIRVRVRENQFDASEVNFLCVHKKLRSKRLTPVLIKEVTRQCHLKG 282
                     4444455554444579999***********99877999*********************************************999998766 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.1
                     EEEEEEEEEEEEETT.EEEEEEEE CS
  Acetyltransf_9  54 vgqlallplelnvpG.ktlkaagv 76 
                     v++++++ + ln+p   t++  gv
      CDO72929.1 298 VSTCRYYHRCLNIPKlVTVRFTGV 321
                     899999999999988777776665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.11
                     EEEE-GGGHHHHHHHHHHHTT- CS
  Acetyltransf_9   2 irelteedldevlellkyaFqd 23 
                     +re+++ d+++v++l+++  q+
      CDO72929.1 347 LREMEDRDVPQVANLFNRYMQR 368
                     5888899999999999877665 PP

>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.7   5.3e-05      0.19     415     514 ..       9     112 ..       2     138 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.3e-05
     DUF3292 415 ekppekpaelkdeelraeaged.epldaseeeleeaiepdeekakekeeekeeekekkkkkkkgskilgllkgttkggvkt...alavdkvkakvgseh 509
                 +k++ek +   +  ++a+ +++ ++ +++ +e e+      +++ ++++ ++++k+kkkk++k  k l+ l+g+ k+++     ++ +dkv+a+ g+++
  CDO72929.1   9 QKAKEKEVVDPEPPISADGEQEdDHSGSEGSEDEQEQDAPGSSTVQAATPSTSSKKKKKKRSKALKALNALRGGGKDAIPEdlvKIVLDKVRAEGGEAA 107
                 333333333333344443333323333222222222222222222222225567777788899999*************852226889*******9998 PP

     DUF3292 510 aknrl 514
                 a+   
  CDO72929.1 108 AHADP 112
                 87654 PP

>> GRA6  Granule antigen protein (GRA6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.6   0.00084         3     100     151 ..      16      68 ..       2      76 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00084
        GRA6 100 dvdPfpvlidegksearg.Psleerieeqddrrrpssvqeaqakvsskraqkr 151
                  vdP p +  +g++e     s     e+++d++  s+vq a +++ssk+++k+
  CDO72929.1  16 VVDPEPPISADGEQEDDHsGSEGSEDEQEQDAPGSSTVQAATPSTSSKKKKKK 68 
                 389999988889887655045555556667899**************988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      807  (0.0450109); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 3331.18
//
Query:       CDO72930.1  [L=456]
Description: hypothetical protein BN946_scf185002.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-64  215.1   0.0      6e-64  214.7   0.0    1.1  1  UFD1      Ubiquitin fusion degradation protein UFD1
  ------ inclusion threshold ------
      0.028   14.2   0.1       0.09   12.6   0.0    1.8  2  CDC48_2   Cell division protein 48 (CDC48), domain 2


Domain annotation for each model (and alignments):
>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   0.0   6.7e-68     6e-64      24     173 .]      57     208 ..      48     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 6.7e-68
        UFD1  24 kiiLPpsaLdeLtrlnieyPmlFelsnkkkkk.sthagVleFtaeegtvylPewmmenlgleegdlveiesvslpkgkfvklqpqsedfldisdpkavL 121
                  +i+PpsaL++L+++++e+P++F+l+n+++ + sth+gVleF+aeeg+v+lP+wmm++l+l+egd ++i+ ++lpkgk+vklq+q++dfl+isdpkavL
  CDO72930.1  57 PVIMPPSALANLSQMELESPWMFKLRNPANPAaSTHCGVLEFIAEEGCVHLPYWMMKTLRLNEGDPIRITGAELPKGKMVKLQAQTVDFLEISDPKAVL 155
                 59**************************77776****************************************************************** PP

        UFD1 122 ekaLrnfatLtkgdvieikyndkvyelkvlevkpes.avsiietdlevdfaeP 173
                 e+aLrnf++Lt+gd+iei+yn+ v+ l v+e++p + ++s+++tdlevdfa+P
  CDO72930.1 156 EQALRNFSALTQGDIIEISYNSIVFGLLVMETQPGNeGISVLDTDLEVDFAAP 208
                 **********************************888**************98 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.43   3.8e+03      20      38 ..     118     140 ..     117     145 .. 0.67
   2 ?   12.6   0.0     1e-05      0.09      17      46 ..     163     194 ..     149     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.43
                 -TTEEEEECCT....CCCEEEEE CS
     CDC48_2  20 tkGdlvvfefk....gqeiklvV 38 
                  +Gd+++++      g+ +kl +
  CDO72930.1 118 NEGDPIRITGAelpkGKMVKLQA 140
                 68999999874444477777765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1e-05
                 EEE-TTEEEEECCTCCCEEEEEEEECCCC..S CS
     CDC48_2  17 rpvtkGdlvvfefkgqeiklvVvstePkg..p 46 
                  ++t+Gd++ +++ +  + l V++t+P +  +
  CDO72930.1 163 SALTQGDIIEISYNSIVFGLLVMETQPGNegI 194
                 589************************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3137.31
//
Query:       CDO72931.1  [L=535]
Description: hypothetical protein BN946_scf185002.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.3e-149  496.7  13.5   7.2e-149  496.6  13.5    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.043   12.6   0.2        0.2   10.4   0.2    1.8  2  Vps52       Vps52 / Sac2 family
       0.11   11.4   0.0       0.25   10.3   0.0    1.5  1  HSL_N       Hormone-sensitive lipase (HSL) N-terminus


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  496.6  13.5  1.2e-152  7.2e-149       3     488 ..      42     533 ..      41     535 .] 0.97

  Alignments for each domain:
  == domain 1  score: 496.6 bits;  conditional E-value: 1.2e-152
                 HHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHHHH CS
  Cpn60_TCP1   3 divkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekaleka 101
                 d+v+t+lGP+GmdKm++ + g++++TnDGatilk+++  hPaak+lv+++++qd e+GDGTt+vv+Lag+Ll +aek++++g+hpt i e ++ka +ka
  CDO72931.1  42 DAVRTSLGPRGMDKMIQTSKGELIITNDGATILKSIQALHPAAKMLVDLSAAQDVEAGDGTTSVVVLAGSLLGAAEKMLQKGIHPTIIAESFQKASAKA 140
                 78************************************************************************************************* PP

                 HHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SST.TSSCE CS
  Cpn60_TCP1 102 leaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieenekeldlgrikvvkieggsledselveGlvldkgvlsp.dmpkk 198
                 +e+L+ei  + +++ +d+++Ll++a+tsl+sk++s+ +  l+ ++v Av +l + +++++dl  i++vk+ gg +ed+elv+G+vl+++v+ +   p++
  CDO72931.1 141 VEYLTEI--STPINLEDKTSLLRAATTSLNSKIVSQYSSTLAPIAVAAVtRLATHDSSNVDLRDIRIVKKVGGTIEDTELVDGVVLNQNVVTTvGGPTR 237
                 *******..7777788*********************************66666666**********************************99888*** PP

                 EECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B.....-HHHHHHHHHCT-EEE-S--HHHHHHHHHH CS
  Cpn60_TCP1 199 lenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgi.....ddlalhflakngilalrrvkkkdlerlaka 292
                 +e+ak+ l++++L+ +k++++ tvv++d  +++k+ k+ +++l+++++ki+k+++nv+++qk+i     dd++l+fl++ +il+++ v+++++e l+k 
  CDO72931.1 238 IEKAKIGLIQFQLSAPKPDMDNTVVINDYRQMDKVIKEGRQYLLNMCKKIKKANCNVLLIQKSIlrdavDDISLTFLKRLNILVVKDVERDEIEFLSKS 336
                 ***************************************************************999999****************************** PP

                 HT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECE.SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCC CS
  Cpn60_TCP1 293 tGatavssledltpeelGtakkveeekigsekttiieev.ksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkey 390
                 +G+++v+++e +t+++lG+a+ vee++    k++ i++v + g++++il  g++  vl+e er+++dAl+vv+++++++ +++GGGa e+++++ l++y
  CDO72931.1 337 LGCKPVADIEAFTEDKLGYADLVEETTHAGAKVVRITGVkNRGRTVSILAMGSNSLVLEECERSLHDALCVVRCLVKKRALIAGGGAPEIHVSRLLSQY 435
                 *************************************983457899***************************************************** PP

                 CCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEX CS
  Cpn60_TCP1 391 aksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiik 488
                 a +++g+e+++++a+a+ALevip tLaeNaGl+pi+++++lr++h+ ge ++gi+v++g i++++e+ vv+pl v ++a++++te+++++L+id+ ++
  CDO72931.1 436 AHTLKGMEAYCFQAYADALEVIPTTLAENAGLNPIAIVTELRNRHALGERNAGINVRKGLISNILEEEVVQPLLVSTSAIELSTETVCLLLKIDDYVQ 533
                 **********************************************************************************************9886 PP

>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   3.3e-05       0.2     139     201 ..     270     335 ..     216     338 .. 0.82
   2 ?   -0.7   0.0     0.075   4.5e+02     192     232 ..     432     468 ..     427     521 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.3e-05
       Vps52 139 nkalekireyivqkiktlRkpkvnvqiiqnkLlkvk...kifeFllennrklalelrqaYidTmkk 201
                 +k+++  r+y+++  k+++k++ nv  iq+ +l+        +Fl+  n  + +++ ++ i+ ++k
  CDO72931.1 270 DKVIKEGRQYLLNMCKKIKKANCNVLLIQKSILRDAvddISLTFLKRLNILVVKDVERDEIEFLSK 335
                 699*****************************98642214689*************9999988877 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.075
       Vps52 192 rqaYidTmkkiyleyfrsYirsLtklqfeeietkddLigve 232
                  ++Y +T+k +  + f++Y  +L+ +    +e+     g++
  CDO72931.1 432 LSQYAHTLKGMEAYCFQAYADALEVIPTTLAENA----GLN 468
                 5789999999999999999999998877666665....333 PP

>> HSL_N  Hormone-sensitive lipase (HSL) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.2e-05      0.25      41     118 ..     241     320 ..     228     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.2e-05
       HSL_N  41 leplvkelaavahefDfdeetpgnGYRslvkvvescllhliklsraias.nrdsllFrkshyvkelEayskl.lasLral 118
                 ++  + +++  a++ D+d+ +  n YR + kv+++  ++l++++++i + n++ ll +ks     ++++s + l+ L++l
  CDO72931.1 241 AKIGLIQFQLSAPKPDMDNTVVINDYRQMDKVIKEGRQYLLNMCKKIKKaNCNVLLIQKSILRDAVDDISLTfLKRLNIL 320
                 5556678888999**********************************753889999999999999999865415667665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3637.71
//
Query:       CDO72932.1  [L=174]
Description: hypothetical protein BN946_scf185002.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.072   13.5   0.0      0.099   13.0   0.0    1.2  1  DUF1491   Protein of unknown function (DUF1491)


Domain annotation for each model (and alignments):
>> DUF1491  Protein of unknown function (DUF1491)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.5e-06     0.099      34     103 ..      99     169 ..      89     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.5e-06
                 EEEEEE-TTS-EEEEEE---........EEEE..EEEE-HHHHHHHHHHHHHH-TT-EEEEEE-S--TTTS CS
     DUF1491  34 ilvkvaeldgtaalyererd.legerawfelaekeeevdeaevdaylarearfDpDlWvveiedregrhll 103
                 +l k++ l+++ ++ er+r   eg+ + + +++++++ +++ + a   +e + D+ lW +  ed+e r+++
  CDO72932.1  99 VLRKLQGLHRRLKVTERDRPpFEGDLKIVVCTQQTSNPSAEGLAALRLKESDDDSCLWWLRCEDEELRNII 169
                 677899999********99989**********8888877777888888999****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1265.63
//
Query:       CDO72933.1  [L=163]
Description: hypothetical protein BN946_scf185002.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00087   18.0   0.0      0.001   17.7   0.0    1.1  1  Adaptin_N      Adaptin N terminal region
  ------ inclusion threshold ------
      0.053   13.8   0.0       0.09   13.1   0.0    1.4  1  Arteri_nucleo  Arterivirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-07     0.001       9      86 ..      78     162 ..      71     163 .] 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-07
                 HHHHCCSSS.-SCHHHHHHHHHHHHHHHCT-.....--GHHHHHHHCCCC.SS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHH CS
   Adaptin_N   9 laeilnsnk.dddekkkeavkkliylialGe.....dvsflffevvklva.skdfelKrlvYlylellaeesedlalLvtnslqk 86 
                 + +i+ +        +ke++  l+y  ++ +     d++f++++ ++l    + +++Kr +Yl+  +++  +++l l+++ns++k
  CDO72933.1  78 VDRIRHHLArSTLTLCKENLILLLYCAMTVNpgvhvDLQFALPHAINLAEaGQTVQDKRTGYLFCAEVMPAEHELQLMLVNSVRK 162
                 556666665556778999999999999999988888888**********989*****************************9987 PP

>> Arteri_nucleo  Arterivirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     1e-05      0.09      44      76 ..      67      99 ..      51     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1e-05
  Arteri_nucleo 44 kpekphfplaeedDlRheltqqerqlclssiqt 76
                   +++  +  lae d +Rh+l ++  +lc++++  
     CDO72933.1 67 PQAADQLLLAEVDRIRHHLARSTLTLCKENLIL 99
                   55666999********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1208.03
//
Query:       CDO72934.1  [L=288]
Description: hypothetical protein BN946_scf185002.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-40  137.5   0.0    6.6e-40  137.0   0.0    1.1  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0   3.7e-44   6.6e-40       2     209 ..      58     260 ..      57     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 3.7e-44
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevg........YcqG 92 
                 +lR+++Wk+ll+++             ++s++   ++  + + +  ++I++D  rt+ +++ fk++  +++L r+L a+ ++n++ +        Y+qG
  CDO72934.1  58 TLRPRIWKILLRVR-------------DVSSEAFLEYVGRGPCEVREKIRNDTFRTLATDRGFKERVSEDMLVRLLDAFVWRNHDRQendqlgftYVQG 143
                 69*********994.............5667777777777777779************99************************87788888899**** PP

  RabGAP-TBC  93 mndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwDll 191
                 mn ++ap+l ++ +e eaF cf++++ +++++ +++++l+g++  lk+l+++lk++dp+ly hl +++l  e++a++ +ltl++++ pl++vl lwD+l
  CDO72934.1 144 MNVLAAPFLYTMPSELEAFYCFAKFI-EESCPLYVQPTLEGVHYGLKLLDRCLKIVDPELYAHLRSKNLSAEIYAFPSVLTLCACTPPLDQVLQLWDFL 241
                 *********66669999*********.9*********************************************************************55 PP

  RabGAP-TBC 192 l.egekfvllrvalailkl 209
                 l +g + ++l v++ +l +
  CDO72934.1 242 LaFGVHLNVLCVIAQLLLM 260
                 5499999888888887744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2171.81
//
Query:       CDO72935.1  [L=727]
Description: hypothetical protein BN946_scf185002.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-45  150.6   1.4    2.2e-15   56.3   0.1    3.3  3  Mito_carr  Mitochondrial carrier protein
     0.0019   16.8   2.3     0.0025   16.4   2.3    1.1  1  Rrn6       RNA polymerase I-specific transcription-initiation


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   2.5e-19   2.2e-15       8      95 ..     412     493 ..     408     495 .. 0.94
   2 !   49.4   0.1   3.6e-17   3.2e-13      10      93 ..     511     599 ..     502     603 .. 0.90
   3 !   42.0   0.0   7.2e-15   6.5e-11       8      90 ..     622     712 ..     618     717 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 2.5e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  +++++ a  ++t++ +Pld +K rlqt +++ +      i +   ++ykeeG+ g+yrGl++ l+ ++  +a+ f++y  +k+++ +
  CDO72935.1 412 AVVCALSASYISTFAGYPLDSIKSRLQTTRQRVS------IPRLALTVYKEEGIIGFYRGLWIPLMTISFVRAASFTIYTRTKEFFHE 493
                 58999**************************977......78899****************************************986 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 3.6e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  10 laGglagavatlvttPldvvKtrlqtqkksskksksaa.....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++G+l+g++ ++  +P+++vK+r q++ + +++++ +      ++++++ i++++G++gly G+   ++r +  +al+f+ y+ ++ ++
  CDO72935.1 511 ISGALSGSLISFGSAPFELVKVRRQLEYTIAASKGVRLvkapsTMEAVRDIFRTNGILGLYTGFRLHFVRDTMGTALYFFEYDGFRYIM 599
                 78999999999999************99999987766699999****************************************998766 PP

  == domain 3  score: 42.0 bits;  conditional E-value: 7.2e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHH..........HHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiy..........keeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                  +++G+lag+ ++ +++PldvvKt++q  +  ++k++  ++++++++++             Gl+ lyrGl+++ lr++ +++l ++l++ + 
  CDO72935.1 622 PFMCGSLAGVSSWALIYPLDVVKTKVQQRALAGEKRR--GVMETFHRLIrgpdpnapkpILLGLARLYRGLGVSALRSVTTHGLLWTLFDLTG 712
                 589************************9999988865..5*********77777777665778888**********************99875 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   2.3   2.8e-07    0.0025     647     832 ..     196     395 ..     127     405 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.8e-07
        Rrn6 647 revaaelllSsirvsklraeasslssslssss............ssssssssssssedpelsr...........edpldalsrytklikssptslsrsv 722
                  ++a +l+l+s  ++  r+ +          s             s++ +s ++ ++     +           edp+ +   ++++  + ++ +s  v
  CDO72935.1 196 SQLALDLTLASDVFVPKRPGKD---------SvttfdedmlnisRSTEAMSLGELEPP----PvhfgflrpipkEDPNGQPIAIEDSMAPTKPVTSLGV 281
                 3566666666666555322222.........022322333354322333333333322....133457788998999999999999999999999977* PP

        Rrn6 723 sniLshWelgsdpaeydwqrtesaleaeeqrqrarrkrekrrrrkeklklasraeasssssssqssssksssssssqlpsssqvptlpd.......... 811
                 + +L++W++g+dp +y++++  +++ a +  +++r +++  + ++ ++ + ++  +   ++s+ + + +ss+++ ++++  s++++ +           
  CDO72935.1 282 RLLLQEWDVGTDPYQYVYRDPYDQTVAPP-ARAQRPAKPSVPTQQATQPVVETGLRP-PAQSQRPPAIASSQPRAPPAIGASEPSVPRKplvaarshdv 378
                 *************************9644.444555555555555553333333322.22333333445666666666666666666669999998644 PP

        Rrn6 812 fslsmqissSQvvsssmSQpe 832
                       ++sS  v +s SQp+
  CDO72935.1 379 L----VPPSSLRVLPSGSQPS 395
                 0....4555555555566664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 5306.80
//
Query:       CDO72936.1  [L=77]
Description: hypothetical protein BN946_scf185002.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 570.70
//
Query:       CDO72937.1  [L=295]
Description: hypothetical protein BN946_scf185002.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-23   83.4   2.5    4.4e-21   75.3   0.7    2.4  3  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.16   2.9e+03      91     107 ..      29      45 ..      21      48 .. 0.81
   2 !   75.3   0.7   2.4e-25   4.4e-21     181     290 ..      97     211 ..      48     215 .. 0.81
   3 !    8.1   0.0   6.5e-05       1.2     323     348 ..     214     239 ..     211     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.16
                   EEEEETTEEEEEEEEES CS
  Ribosomal_L3  91 gyvetprGlrslktvwa 107
                   g+++ +rG++ +++ ++
    CDO72937.1  29 GLIARKRGMMVMWDNFG 45 
                   89999999999998775 PP

  == domain 2  score: 75.3 bits;  conditional E-value: 2.4e-25
                   EEEEECHCSCHHHHHHHHHHCCTC..EEECCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS..SSS-S-SS-S.SSSS--TTS--SEE CS
  Ribosomal_L3 181 llEiqvngGtiaekldfarealek..tvavaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg..lRkvaaigaw.dparVsstvaraGq 272
                        v    i++ + ++ +a     t+  a +F +g+++Dvi++ +GkGf+G++kRW +k+l++ ++ +  +R  +aiga  dp+rV+++ ++aG+
    CDO72937.1  97 FAKAGVPPKRIVKEFPVTPDAHVPvgTTLSAIHFVPGQYVDVIAKSIGKGFQGTMKRWNFKGLRASHGVSisHRSAGAIGAHqDPGRVWPGKKMAGR 193
                   44444444478888888888777667889999************************************9999********9648************* PP

                   ESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 273 kGyhhRtelnkkiyrigk 290
                   +G  + t  n+ + r+++
    CDO72937.1 194 MGGERITTQNLYVVRVDS 211
                   *************99987 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 6.5e-05
                   CEEEEES--SSSTTEEEEEEE-SSGG CS
  Ribosomal_L3 323 dfilvkGsvpGpkkrlvklrkslltq 348
                   d+i+v+G+vpG  +  v +r+++   
    CDO72937.1 214 DLIYVRGCVPGVDDAHVMIRDAKKKM 239
                   89*******************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2051.55
//
Query:       CDO72938.1  [L=385]
Description: hypothetical protein BN946_scf185002.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    8.6   5.8        1.2    8.8   4.6    1.4  1  DUF2981   Protein of unknown function (DUF2981)
        2.4    7.2  24.4        3.2    6.8  24.4    1.1  1  SOG2      RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.6   0.00014       1.2      75     201 ..       7     136 ..       5     168 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00014
     DUF2981  75 ltvLdmaelvhllPkaPqlkdvsdf.qkseaflrkrklp..ddkkllpddiskastdennlpdaklrvpqneespikqhv.....rsdvnspantaela 165
                 +++L m   v++lP a  l dvs    +se++  +  +p   +  + p d   + + + ++p+a+   +     p+         ++d +  ++t    
  CDO72938.1   7 FALLAMCITVQALPIAFTLADVSAGtLTSEGLFSTALSPvaTSSPVAPTDSVSDVNSTAAIPTASTTDT--SSDPASTDNangasQTDPSIASAT---- 99 
                 678999999**************8636888998888877667888999999999999******887776..455554222011112222211111.... PP

     DUF2981 166 tidaalrdlekakklire.....tatkvpvgaasskipkea 201
                     +  + ++ ++++++     ++t+++  a+ +++p+++
  CDO72938.1 100 ----DDGSSDASSTVVTDssaspSSTATGDRATGTDSPTSS 136
                 ....1112222222222211111333333333333333332 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  24.4   0.00036       3.2     220     360 ..      58     203 ..      23     233 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00036
        SOG2 220 aqdveqGaaltplrsdqipfnl......srsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstsppgalsrqslsttgststltss 312
                 +           ++       +      +++ + ss ++s+ +a+ ++q+++s+ sa+++g++  asst ++++s sp +++++    +tg +s+++s 
  CDO72938.1  58 VS---------DVN-------StaaiptASTTDTSSDPASTDNANGASQTDPSIASATDDGSSD-ASSTVVTDSSASP-SSTATG-DRATGTDSPTSSA 137
                 11.........222.......1233443555555566677777777778888887777766444.4444455555555.333333.3455666666777 PP

        SOG2 313 sksrs..................ssrsntnasastprslattpappasaesfastlt.asrintlaa 360
                 ++ +s                  s + +t++ +st +s a t+ pp+ ++s  s++t  s+i ++a+
  CDO72938.1 138 AQPTStsvsfdipvvppaclalaSGAQTTSLPTSTIASTAFTTLPPSGSSS-LSNNTiISTIASNAT 203
                 77777889**************8777777999********99998888888.577776777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2623.95
//
Query:       CDO72939.1  [L=140]
Description: hypothetical protein BN946_scf185002.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.18   11.7   0.0    1.4  1  TrkA_C    TrkA-C domain


Domain annotation for each model (and alignments):
>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.8e-06      0.18      34      60 ..      18      43 ..       8      46 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.8e-06
                -T-EEES--TT-B--TT-EEEEEEEHH CS
      TrkA_C 34 RggeliipsgdtvLeeGDvllvvgsps 60
                R  ++++p+ +t+L +GD  +v  +++
  CDO72939.1 18 RV-KIVSPTVNTTLSPGDSFVVDIDKA 43
                55.799****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 978.05
//
Query:       CDO72940.1  [L=169]
Description: hypothetical protein BN946_scf185002.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1209.08
//
Query:       CDO72941.1  [L=932]
Description: hypothetical protein BN946_scf185002.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-34  118.2  51.9    1.8e-20   73.2   7.6    3.9  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.17   12.1   0.0        1.1    9.5   0.1    2.1  2  DUF4611   Domain of unknown function (DUF4611)
       0.17   11.9   0.0       0.42   10.6   0.0    1.6  1  SafA      Two-component-system connector protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  18.0     1e-17   6.2e-14      34     257 ..      88     361 ..      33     369 .. 0.73
   2 !    4.0  10.3    0.0033        20      74     154 ..     423     504 ..     406     517 .. 0.51
   3 !   73.2   7.6   2.9e-24   1.8e-20      30     185 ..     710     875 ..     628     911 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1e-17
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.......sslwlllvlrvlqGlga..galfpagaaliadwfpkeergra 122
                 i  l+t+ +l+a +++  +G+lsdr+Gr +vl + ++++ ++ + +l++a        ++w+ +v+ ++ G+ +  +++  +++a+i+d + + er+ra
  CDO72941.1  88 ITVLTTTSGLLATLTTAWWGSLSDRYGRIWVLGFNVTGLMASdMSFLAVAhfwnklpGTYWWYVVGPAVEGMVGgiSVASVIMHAYISDCSGPGERSRA 186
                 45588889**********************************99999943454566677889*********9993445566799*************** PP

       MFS_1 123 igllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee...............kgtgpaplvpawkallk 205
                 ++ l++   +G+ +gpl+gg+++        +fy+ + + +l+ +   +++  +++ ++  + + ++               ++   + ++++++ ll 
  CDO72941.1 187 FSQLMGLLFFGMSVGPLIGGFILrGTHHLFPIFYVTTTIDALVSLS--VWFIIPESLSPERRAAAQSqgaelsesriwgrlrQWGSAFDVISPLSVLLP 283
                 ***********************65555666677777777777665..555555555555555555545777877777766644444444445666666 PP

       MFS_1 206 dpvl.........w..illialllfffgfsglltllplylqevlgls...............glllaglllallalvg 257
                 ++v          w   +l a+++f++ +++ ++    y+ +++g++               +++l++++++++ l++
  CDO72941.1 284 QKVEtpgkgrefdWnlTILGAAYGFGTLVQASVYQQVQYASFTYGWTsetinywmggvnvskAVYLTLIFPGIVKLIT 361
                 66446667777788844555555555555554444444999******9999777777766666666666666666665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0033
       MFS_1  74 lglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpke...ergraigllsagfslGa.ilgpllgglla.sslg.Wravf 154
                 l+   ++  + +  l+++  +  +lg +++ p++++l+ d++ ++   + gr +g l++ ++l++ i+gp+l g+ +   +g  +++ 
  CDO72941.1 423 LT---PT--AASGaLFAAYSMCISLG-ASFGPVMQSLALDLYGQRggaDTGRLLGALTVVSALSShIVGPMLFGVTYmKTVGtVPWAI 504
                 22...11..22333444444555555.4555555555555555544445555555555555555555555555555544444455555 PP

  == domain 3  score: 73.2 bits;  conditional E-value: 2.9e-24
       MFS_1  30 spseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll.f....a..sslwlllvlrvlqGlga..galfpagaaliadwfpke 117
                 +++e+++ ++t+ +++++ ++  +G++sdr+Gr rv+ l++++ +l+ l++++ f        ++++l+v+ vl Gl +   ++ ++++a+++d +p++
  CDO72941.1 710 AVAELNIiMTTAMGILSCMTTAWWGSVSDRYGRTRVMSLAVVGILLTdLTFIAvFyfyeQlpGGYYFLIVGPVLEGLLGglTSMSANVHAYMSDCTPPS 808
                 445555557788999**********************************999985445526677889*********998334578899*********** PP

       MFS_1 118 ergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                 +r+r+++ + +    G+++gp lggl +  s  + +vfyi+a++ l+ + l  ++++ +++ ++ + ++
  CDO72941.1 809 QRSRVFSRYLGLLFTGMAIGPTLGGLAIrLSRTFISVFYIAAGLHLVYAFL--IWFVIPESLSPAEMHA 875
                 ****************************66666***************776..7777777666655444 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00019       1.1      38      94 ..     576     633 ..     567     635 .. 0.68
   2 ?   -0.5   0.0      0.25   1.5e+03      28      48 ..     783     803 ..     780     814 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
     DUF4611  38 lreevsellstlveqe..aqddvaaagdeeeegededdeeeekniknktksdePpaKrt 94 
                 + ee++ell++ v+     +++ a++gd +e++ de++e +e  i++    + P  Kr+
  CDO72941.1 576 IGEETAELLHEFVHPHhdSEQTLAEDGDAAESDLDEQEE-QEYVIDHAWREKLPWWKRP 633
                 67999********98853555556666666555555554.4577777777777777776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.25
     DUF4611  28 lksllsgvaqlreevsellst 48 
                 l++ll+g+  +  +v + +s+
  CDO72941.1 783 LEGLLGGLTSMSANVHAYMSD 803
                 899**********99998886 PP

>> SafA  Two-component-system connector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     7e-05      0.42      16      43 ..     742     770 ..     729     772 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7e-05
        SafA  16 ykeimsvivvvlllt.ltliaifsaidql 43 
                    +ms  vv +llt lt+ia+f   +ql
  CDO72941.1 742 RTRVMSLAVVGILLTdLTFIAVFYFYEQL 770
                 4679**9999777776*******988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 6008.41
//
Query:       CDO72942.1  [L=140]
Description: hypothetical protein BN946_scf185002.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-18   65.0   0.0    5.7e-18   64.9   0.0    1.0  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   3.2e-22   5.7e-18       2     121 .]      12     136 ..      11     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 3.2e-22
                  HHHHHHHCTTT....SSEEEEEEECTTTEEEEEESS-....HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHH CS
  Cofilin_ADF   2 keafkelksgk...ktkyilfkidddkeeivveeege....tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskd 92 
                  k+a++++++ +    ++++++ki+++  ++++ee ++    ++e+l+eelpe+ prY+++++e  h+d++k+ +lv+++w P s+ +    l as   
   CDO72942.1  12 KTALRKFRFARrdaGHAALVVKINKQ--KLIMEEVEQyddiSIEDLAEELPENSPRYVLLSYELIHSDGRKSFPLVLLNWAPTSSEMGLLTLHASALI 107
                  789999999999999********965..68887733345799*****************************************99************* PP

                  HHHHHCTTSEEEEEE-CGGC.CSHHHHHHH CS
  Cofilin_ADF  93 alkkelkgisveieatdlde.lteeelkek 121
                  +++++   +s+ ie++d  e lt+e++ +k
   CDO72942.1 108 DFQNTA-DVSKVIEVRDGAEgLTKESIDQK 136
                  ******.78777****98664788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1067.59
//
Query:       CDO72943.1  [L=308]
Description: hypothetical protein BN946_scf185002.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-77  261.0  11.9    1.8e-77  260.7  11.9    1.0  1  Mannosyl_trans  Mannosyltransferase (PIG-M)
    1.6e-08   34.0   2.5    1.6e-08   34.0   2.5    2.0  2  PIG-U           GPI transamidase subunit PIG-U


Domain annotation for each model (and alignments):
>> Mannosyl_trans  Mannosyltransferase (PIG-M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.7  11.9     2e-81   1.8e-77       1     258 [.      31     300 ..      31     301 .. 0.92

  Alignments for each domain:
  == domain 1  score: 260.7 bits;  conditional E-value: 2e-81
  Mannosyl_trans   1 istrGnadsivailvlltlyllekrkiasaalvlGlavhlkiYPliyalalalslskkkeq..svaakllrllkiavlvlvlvalisllaltlll 93 
                     istrG+++s+++++vl+tly+  k ++   a++lG++ h kiYP+iy ++ +  l  +     + ++   ++++++++ + lv+ +++lal  ++
      CDO72943.1  31 ISTRGSSESVLSLFVLATLYFALKGRWDLCAVFLGISTHWKIYPFIYGVSCLGVLGGQGVAvaGWQSLGRSIVNVRTIRFALVSGLTFLALGAAM 125
                     8*************************************************998886655543255555569************************ PP

  Mannosyl_trans  94 yklYGqefleeaylYhlvrkDhrhnfslyflllYleeaskva.assil.......kllaflPqlvllllvslkf...rrnlafalfvqtfvfvtf 177
                     y ++G  flee y+Yhl+r Dhrhnfs+yf+l+Yl+   ++  ++  l        l+ f+Pq+vl l + l f   r++l+fa+fvqtfvfv f
      CDO72943.1 126 YAVWGRPFLEESYFYHLTRLDHRHNFSPYFYLVYLTYPGEMSaPEPVLwkrllrsPLTSFVPQMVLSLGTGLLFgrrREDLVFAWFVQTFVFVVF 220
                     ***********************************97666553444446666677789****************99999**************** PP

  Mannosyl_trans 178 nkvctsqYfvWylvlLplllskvkllswkkalvllllWlatqalWllaayllefegkntflllflasllfllanvviLkql 258
                     nkvctsqYf+Wy  +Lpll++++ + s+++al   ++W+ tqalWl++ay+lef g+n+f+ l++ sl++++ n+++L+ +
      CDO72943.1 221 NKVCTSQYFLWYTLFLPLLVPRLSM-SFRRALAYGAVWMGTQALWLSEAYKLEFLGHNVFFGLWIRSLIYVVGNCWVLAGI 300
                     *************************.****************************************************976 PP

>> PIG-U  GPI transamidase subunit PIG-U
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   2.5   1.8e-12   1.6e-08     121     265 ..      13     157 ..       2     163 .. 0.76
   2 ?    0.3   2.1     0.031   2.7e+02     297     355 ..     203     262 ..     185     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.8e-12
       PIG-U 121 lsplliaavYlfNPltilscvslStsvlsnlllllslylalkgkallsalslalatylslypllllapllllllk.llkaskskkpsksnklskllrll 218
                 +   +++ ++l+NPl++  +  +S++++  l++l++ly+alkg+  l+a++l+++t+ ++yp++  + +l +l    +     ++  +s    +++r++
  CDO72943.1  13 RLATFLVSFHLLNPLVFTISTRGSSESVLSLFVLATLYFALKGRWDLCAVFLGISTHWKIYPFIYGVSCLGVLGGqGVAVAGWQSLGRSIVNVRTIRFA 111
                 45678999*********************************************************9999977777222222333344444445566666 PP

       PIG-U 219 llfllyllvLllaSfllggsws..flratygniltvsdltPnlGlfWYf 265
                 l++ l++l+L  a ++    w   fl++ y  +lt  d+  n   + Y+
  CDO72943.1 112 LVSGLTFLALGAAMYA---VWGrpFLEESYFYHLTRLDHRHNFSPYFYL 157
                 6666666665555555...444559999999999998888888888877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.031
       PIG-U 297 rkqpllllvlllalilifkpyptvgdlalllsLlplfke.llkrmkysfiillillvtll 355
                 r++ +++ ++++ ++++f+   t   ++ ++++lpl    l   ++ ++  +++++ t  
  CDO72943.1 203 REDLVFAWFVQTFVFVVFNKVCTSQYFLWYTLFLPLLVPrLSMSFRRALAYGAVWMGTQA 262
                 444567777778888888888888888889999999866454444444444477766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2274.38
//
Query:       CDO72944.1  [L=155]
Description: hypothetical protein BN946_scf185002.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-43  147.6   0.0    8.9e-36  123.0   0.0    2.0  2  Arf       ADP-ribosylation factor family
    0.00023   20.7   0.0     0.0049   16.3   0.0    2.0  2  SRPRB     Signal recognition particle receptor beta subunit
     0.0064   15.7   0.1      0.067   12.3   0.0    2.1  2  G-alpha   G-protein alpha subunit


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.7e-09   4.6e-05       2      28 ..       8      34 ..       7      36 .. 0.93
   2 !  123.0   0.0   1.5e-39   8.9e-36      71     175 .]      43     155 .]      39     155 .] 0.96

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.7e-09
                HHHHHGGTT.TTEEEEEEEESTTSSHH CS
         Arf  2 lsilaklklkkkelrilllGLDnaGKt 28
                 +ila+l l +k+++il+lGLDnaGKt
  CDO72944.1  8 WDILAQLGLLHKNAKILFLGLDNAGKT 34
                57999*********************9 PP

  == domain 2  score: 123.0 bits;  conditional E-value: 1.5e-39
                 GGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG........SSSSSSEEEEEEBTTTT CS
         Arf  71 lRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellglee........lkgkrkleiqkcsavkg 161
                 +R+lW++Yf+++d+++f+vDsad eR++e+k+eL+all+ eel++v++l+l+NK+D+p+a+se+elr+ lgl++        l+  r++ei++cs+v++
  CDO72944.1  43 ARRLWRDYFPEVDGIVFLVDSADFERFAESKAELDALLSIEELSKVPFLILGNKIDAPGAVSEDELRHYLGLYQttgkgkvpLNDIRPIEIFMCSVVQR 141
                 7*************************************************************************888888777799************* PP

                 BTHHHHHHHHHHHH CS
         Arf 162 eglkeglewlsesi 175
                 +g+ eg++wls++i
  CDO72944.1 142 QGYGEGFRWLSQYI 155
                 ***********986 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.014        86       3      17 ..      20      34 ..      18      40 .. 0.88
   2 !   16.3   0.0   8.3e-07    0.0049      75     134 ..      53     109 ..      40     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.014
                --EEEEE-STTSSHH CS
       SRPRB  3 kpavllvGlsdsGKT 17
                + ++l++Gl ++GKT
  CDO72944.1 20 NAKILFLGLDNAGKT 34
                5789**********9 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8.3e-07
                 GEEEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHH CS
       SRPRB  75 slkglvfvvDStidpkevkevAEllyeilliteklkdavdiliACnKqelflakspklik 134
                 ++ g+vf+vDS+ +++ +++ AEl   +l+i e    +v++li  nK +   a s+  ++
  CDO72944.1  53 EVDGIVFLVDSADFERFAESKAEL-DALLSIEE--LSKVPFLILGNKIDAPGAVSEDELR 109
                 5789*******************6.66777777..5689********9987777666555 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.027   1.6e+02      22      37 ..      19      34 ..      10      42 .. 0.87
   2 !   12.3   0.0   1.1e-05     0.067     216     280 ..      44      98 ..      39      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.027
                .EEEEEEEESTTSSHH CS
     G-alpha 22 revkllllGqseSGKs 37
                ++ k+l+lG +  GK+
  CDO72944.1 19 KNAKILFLGLDNAGKT 34
                368************8 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.1e-05
                 HHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HH CS
     G-alpha 216 rkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlD 280
                 r+ W  +f +vd i+Flv  ++f           r+ es +  +++++ ++l ++p++++ nK+D
  CDO72944.1  44 RRLWRDYFPEVDGIVFLVDSADF----------ERFAESKAELDALLSIEELSKVPFLILGNKID 98 
                 899********************..........47788888888888888888888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1238.63
//
Query:       CDO72945.1  [L=135]
Description: hypothetical protein BN946_scf185002.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1122.00
//
Query:       CDO72946.1  [L=476]
Description: hypothetical protein BN946_scf185002.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-29  101.6   0.0    4.4e-29  100.9   0.0    1.4  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    2.4e-05   24.2   4.8    6.8e-05   22.8   4.8    1.8  1  zf-CCHC          Zinc knuckle
    7.9e-05   22.2   0.3    0.00014   21.5   0.3    1.4  1  DUF4219          Domain of unknown function (DUF4219)
    0.00023   20.8   3.9    0.00058   19.5   3.9    1.7  1  zf-CCHC_5        GAG-polyprotein viral zinc-finger
     0.0094   15.7   0.0      0.016   15.0   0.0    1.4  1  Retrotran_gag_3  gag-polypeptide of LTR copia-type
  ------ inclusion threshold ------
      0.018   14.7   2.4       0.04   13.7   2.4    1.5  1  zf-CCHC_4        Zinc knuckle
      0.083   13.3   0.7       0.16   12.4   0.7    1.4  1  eIF3g            Eukaryotic translation initiation factor 3 s


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   1.7e-32   4.4e-29       1     136 [.      55     199 ..      55     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.7e-32
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkv 94 
                      w+kkdakal +I+l ++++ l +v+++kt+ke+Wd+L+e+++++++   +  r+klf+ +++eg ++++h++kl+ + +eL alg++++d d +
       CDO72946.1  55 WRKKDAKALRAIRLRVAKDALVYVQDAKTSKEAWDTLAETFQETGPIGIIEARRKLFRAQCAEGADIEEHLRKLRGYLSELHALGQTVSDADFA 148
                      99******************************************************************************************** PP

  Retrotran_gag_2  95 vllLasLPesyetfvtaies.........seedltleevieklleeeerrk 136
                      +++L+sLPes++ f+ ai+          ++ +lt  ++i+++l+e+ r k
       CDO72946.1 149 FIILTSLPESWNPFIRAIDPtdltetepgKAPRLTSAKLITRILQEDHRGK 199
                      ******************876665566666667888899999999998866 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   4.8   2.6e-08   6.8e-05       2      16 ..     217     231 ..     216     233 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.6e-08
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                 +Cy CG+ GH+ar+C
  CDO72946.1 217 TCYSCGRRGHYAREC 231
                 8************** PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   5.3e-08   0.00014       1      24 [.      14      37 ..      14      40 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.3e-08
     DUF4219  1 LdgtNYatWklrMklyLiaqdLWe 24
                L+ +NY+tW ++M   L +++LWe
  CDO72946.1 14 LTADNYHTWRTQMTDILAELELWE 37
                899********************9 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.9   2.3e-07   0.00058       5      23 ..     218     236 ..     217     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.3e-07
                 -TTT-SSBS-TTT---SEE CS
   zf-CCHC_5   5 CpRCkkgkHwardChskfd 23 
                 C  C+++ H+ar+Chs+ +
  CDO72946.1 218 CYSCGRRGHYARECHSRSH 236
                 999**************98 PP

>> Retrotran_gag_3  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.3e-06     0.016       2      32 ..       1      31 [.       1      47 [. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.3e-06
  Retrotran_gag_3  2 hsdnpGlvlvsvqLdgdNYssWkramrlaLs 32
                     +sd+++++   + L+ dNY +W++ m+  L 
       CDO72946.1  1 MSDDSSSSYRIEPLTADNYHTWRTQMTDILA 31
                     5899999999999*************99886 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.4   1.6e-05      0.04      32      48 ..     216     232 ..     214     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 + Cy+Cg+ GH +++C+
  CDO72946.1 216 ITCYSCGRRGHYARECH 232
                 57**************8 PP

>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   6.2e-05      0.16      62     122 ..     176     234 ..     170     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.2e-05
       eIF3g  62 pgpnsatttvg.eevelkleeekeeekeeeekekaklkkkekklvkCriCk.gdHfTskCPyk 122
                 pg+ ++ t++     +l+  +++    +++++++ +lk+++k+ ++C  C+   H+  +C  +
  CDO72946.1 176 PGKAPRLTSAKlITRILQE-DHR---GKHDNDNNTALKATDKSKITCYSCGrRGHYARECHSR 234
                 5555555555432333333.222...334555555555445567******669*******866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3675.61
//
Query:       CDO72947.1  [L=618]
Description: hypothetical protein BN946_scf185002.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-62  208.9   0.0    1.2e-61  208.5   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
    1.6e-15   57.3   0.1    8.5e-15   55.0   0.0    2.1  2  rve       Integrase core domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.044   13.6   0.0    1.7  1  rve_3     Integrase core domain
      0.097   13.1   0.0       0.32   11.4   0.0    1.9  1  DUF4123   Domain of unknown function (DUF4123)


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   0.0   2.7e-65   1.2e-61       2     223 ..     395     617 ..     394     618 .] 0.96

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 2.7e-65
       RVT_2   2 tyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 ty+lv  P drk+ig +Wvf++k+d+  +  k+karlvaqGfsq++g+dy e+faPv+rl+++r+llal +  ++ +   d+  a+Ln++l ee++++q
  CDO72947.1 395 TYTLVPCPPDRKPIGCKWVFRLKRDADgRIIKHKARLVAQGFSQIPGIDYVETFAPVVRLETLRVLLALGTLLDYDIQVADIVGAYLNGHLREEIFMRQ 493
                 8**********************99987999******************************************************************** PP

       RVT_2 100 PpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk 198
                 Pp +e+      v+kL+++lyGlkq+++ Wn ++d+ +k  +f+r  + + +y+r+   +  iva++vdd+ + +s+++  + +k+el++ f+l+dlg+
  CDO72947.1 494 PPMYENG--RPDVCKLERTLYGLKQSGREWNLELDQAFKRRNFKRLISDQCVYLRARDTDTSIVAVHVDDMTMLTSSPETTDALKQELSAFFELSDLGP 590
                 **99998..6679*******************************************99999************************************** PP

       RVT_2 199 vskfLGieiaq..eaggiklsladyia 223
                 + + +G+e+++   a +++l +++yi 
  CDO72947.1 591 IRQVVGLEVTRdrAARTLTLRQTQYID 617
                 *********995456788999999997 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.9e-18   8.5e-15       7     115 ..      40     149 ..      36     152 .. 0.91
   2 ?   -0.8   0.0      0.38   1.7e+03      37      65 ..     554     585 ..     526     606 .. 0.71

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.9e-18
         rve   7 lwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqd 104
                 l  +D++   r  +  g++y++ ++d+++r+++ ++ sd++ + ++l++ ++++++++g + ++v+  ng+e+ +++++ fl+ +gi++++t+p+++ +
  CDO72947.1  40 LAVCDMWgPARHRGAHGEYYFTLFTDVCTRYAMRYFSSDKKHQLDALQAYHAFLKNQKGIRLKAVRVNNGKEFLNRHIKGFLRVHGISLELTAPHSSAQ 138
                 556666665555566679********************************************************************************* PP

         rve 105 nGkvErfhrtl 115
                 nG++Er + tl
  CDO72947.1 139 NGIAERSFLTL 149
                 *******9886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
         rve  37 ilaealsde...mdastvlalleravarfggv 65 
                 i+a++++d+   ++++ ++++l++ ++ f+++
  CDO72947.1 554 IVAVHVDDMtmlTSSPETTDALKQELSAFFEL 585
                 55666666666667777888888888888776 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.8e-06     0.044       1      32 [.     124     155 ..     124     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-06
       rve_3   1 lgielsyiapgkPqqNglvEsfngtlrdelln 32 
                 +gi l+++ap++  qNg +E+++ tl  e++n
  CDO72947.1 124 HGISLELTAPHSSAQNGIAERSFLTLWPEAVN 155
                 699*********************99988887 PP

>> DUF4123  Domain of unknown function (DUF4123)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-05      0.32      74     118 ..     192     235 ..     150     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-05
     DUF4123  74 kswgiflaSkaplealarhlrrllrvelpdgravlfRfydprvlr 118
                  ++ ++l+ ++++++lar  r + ++ + ++++  +R+ydp+  +
  CDO72947.1 192 GAVCWVLRQDSSIDKLARKSRPCRFLGF-SEESRAYRLYDPTTQQ 235
                 468999**********************.7777899*****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4627.40
//
Query:       CDO72948.1  [L=764]
Description: hypothetical protein BN946_scf185007.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-22   80.5   0.0      4e-13   49.6   0.0    2.5  2  ABC1      ABC1 family
  ------ inclusion threshold ------
      0.022   14.7   0.4       0.61   10.0   0.0    2.3  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.9e-10   1.7e-06       3      35 ..     290     322 ..     288     334 .. 0.92
   2 !   49.6   0.0   4.4e-17     4e-13      37     117 ..     357     438 ..     350     440 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.9e-10
        ABC1   3 lgkkleeiFaefdeePiAaASiaqVhrAklksg 35 
                 ++++ ee+F+ fde+Pi+++ iaqV+rA+lk++
  CDO72948.1 290 FQRPFEEVFEAFDETPIGTGAIAQVYRATLKQD 322
                 67899*************************964 PP

  == domain 2  score: 49.6 bits;  conditional E-value: 4.4e-17
        ABC1  37 eVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknaekfrenfaklke.vkvPk 117
                 +Va+Kv +p+v+k i++Dl++++++a++++ ++  + l+l e v+ f + + e+ld++ EA+n  kf++nf+  k  v++P+
  CDO72948.1 357 SVAIKVLHPHVEKMINRDLSIMSFFANVISLLPGMQWLSLPEEVEVFGQMMHEQLDLRIEAENLAKFEKNFETRKLpVTFPR 438
                 7**************************9988776666**********************************99884477775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.013   1.1e+02      97     156 ..     175     289 ..     154     304 .. 0.65
   2 ?   10.0   0.0   6.8e-05      0.61     166     181 ..     489     504 ..     392     515 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.013
                 HHHHHHC.......................................................CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCC CS
         APH  97 algefla.......................................................alhqvdpaalpladflaqdlellrqlesatarllase 140
                 ++ +fl+                                                       ++++++p++ +la ++a++++l++ l  ++ + l+s+
  CDO72948.1 175 RILAFLRdrliepiltakrfaylcfifvpvllaspmlligqpegkyggdrwgavwwygfltsQMQRAGPTFIKLAQWAASRADLFPALLCERMGALHSR 273
                 444444455555555555555555555555555555555555555555555555556666669********************9999998888888888 PP

                 TCC.HHHHHHHHHHHHH CS
         APH 141 lld.lleeleeqvlaal 156
                  +  + +  ++ v++++
  CDO72948.1 274 GRAhR-LSHTKKVIEEV 289
                 87733.33333366555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.8e-05
                 EEEE-SS-SGGGEEEC CS
         APH 166 tvllHgDlhpgNllvd 181
                   ++H DlhpgN++++
  CDO72948.1 489 DNFVHADLHPGNIMIK 504
                 569***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5660.40
//
Query:       CDO72949.1  [L=1353]
Description: hypothetical protein BN946_scf185007.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0012   18.7   0.0     0.0028   17.5   0.0    1.5  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-07    0.0028      88     182 ..      85     179 ..      81     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-07
                    EEEE.C.TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-........GGGEEEEEEE-----SSCCCHHHHHHH CS
  Peptidase_C48  88 iPin.edgkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkql.......dltpfeierltkvpqqknsgDCGiyvlk 175
                    iP++  d+ HWvl  i+  +++  i DS+  l++        +++ + L+++++++ + +l        + ++ ++  ++  qq ++ +CG++++ 
     CDO72949.1  85 IPLCgGDTPHWVLGWIDHVSCQYGIVDSIPELDS--------EQWASPLFQRSIDRIVADLamepilwTSMKMMKRSPDPHDQQIDGWSCGLFTMI 172
                    677744488*************************........5566666666666666666444454433444466677888************** PP

                    HHHHHHC CS
  Peptidase_C48 176 fiellae 182
                     i+ +a 
     CDO72949.1 173 AIKSFAD 179
                    **99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 8395.45
//
Query:       CDO72950.1  [L=1191]
Description: Glycosyltransferase Family 8 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-24   85.9   0.0    7.2e-24   84.7   0.0    1.6  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0     4e-28   7.2e-24       3     255 ..       9     229 ..       7     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 4e-28
  Glyco_transf_8   3 alaldknYllgasvviksllknakep.....awfalnfhiltaeievenleklnklassykevlellesdkksledfesklklrspkylsllnyl 92 
                     +l  ++ Yl+ga++v++ l ++ + p     + f+    +   +++v  ++ l++ +  ++ v   +++++++++           +   ++++ 
      CDO72950.1   9 TLVTSDHYLPGALAVAAALKELHPSPptppeVPFQTVCLVTPETVDVSSIKLLRRAFDVVIGV---EVIEQEDTKG-----LQLLGRPDLSHVLT 95 
                     5778999****************9999997666666666666667766666666666666666...5555555443.....4688999999**** PP

  Glyco_transf_8  93 RlylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldewrkenitetlikwl 187
                     +l+++ l ++++ki++lDaDv++ + ls+L+ l+ +   +aav d                    ++++Fn+Gvl++ + e++ +++te    +l
      CDO72950.1  96 KLHVFRL-KQYSKIIFLDADVLPVRPLSHLFTLPHE---FAAVPD------------------VGWPDIFNSGVLVLTPGEDKFNELTE----LL 164
                     *******.****************************...999999..................89****************99988886....56 PP

  Glyco_transf_8 188 nlnekrtllklgdqdilnivfkgkvkeldkkynvlglgyeqskkskkeitenaaviHyiGpaKPWldi 255
                     +++++   +  gdq +ln +  +++++l+++yn++++  + + ++++ +  +++ iH+iGp KPW +i
      CDO72950.1 165 KTKGT---WDGGDQGLLNEWRGDNWHRLSFTYNTTPTAAYTYAPAYERFGSKISAIHFIGPNKPWASI 229
                     66777...******************************99*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 7464.95
//
Query:       CDO72951.1  [L=222]
Description: hypothetical protein BN946_scf185007.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0011   18.9   4.9     0.0011   18.9   4.9    2.1  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
       0.24   11.5  24.6        0.1   12.7   4.8    2.2  2  ATP-synt_B      ATP synthase B/B' CF(0)
        2.4    7.9  13.2        2.1    8.1   0.4    3.2  3  SCAB_CC         Coiled-coil regions of plant-specific actin-b


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   4.9   1.8e-07    0.0011      23     144 ..      63     175 ..      56     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.8e-07
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHH CS
  Apolipoprotein  23 laqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealka 117
                     ++ +l + ls++++ ++ + +a++++++a  ++y++++++   + +   ++++++  + l          +q++ ++y + +   ++  ve+  a
      CDO72951.1  63 VN-QLEEGLSHKTDVATSQGAADVQSAKATASSYVEQAKNLASSAIATAQSTVETGKQYL--------ASAQQAAKPYVDSAAATAKPYVESATA 148
                     33.377778888888888888888888888888888888888888888888888877777........557888888888888888888888888 PP

                     HHCHHHHHHHHHHHHHHHHHHH----- CS
  Apolipoprotein 118 rlapyveelrqklaerleelkeslaph 144
                     + +pyve++ +  + ++e  k+ ++  
      CDO72951.1 149 TAKPYVESAAAAAQPHIEKAKSVVTGV 175
                     888888888888888888888887765 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  12.9    0.0054        32      37     125 ..      18     105 ..      13     109 .. 0.89
   2 ?   12.7   4.8   1.7e-05       0.1      34      97 ..     106     169 ..     104     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0054
  ATP-synt_B  37 deiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIeqekdralaeLreqvvalavq 125
                 +++ae e++  ++ +  ++  +ql +A ++Aa+i +  + ea  + +++e+  + + +   +++aa+++ +k++a + +++ + +la++
  CDO72951.1  18 AALAETEASNLNLSKEVEQNADQLHNAASDAATIAQIKEPEAVSAVNQLEEGLSHKTDVATSQGAADVQSAKATASSYVEQ-AKNLASS 105
                 67889999999999999***********************************************************99975.4555544 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.7e-05
  ATP-synt_B  34 kIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlk 97 
                 +Ia++++  e+ ++ +a ++++a+     A a A+ ++++A++ a+   e + a+a+ ++e+ k
  CDO72951.1 106 AIATAQSTVETGKQYLASAQQAAKPYVDSAAATAKPYVESATATAKPYVESAAAAAQPHIEKAK 169
                 6888899999999999999999999999999999999999999999999999999999988876 PP

>> SCAB_CC  Coiled-coil regions of plant-specific actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.5     0.017        99      55     144 ..      29      64 ..      14      91 .. 0.48
   2 ?    3.3   3.3     0.011        64      54     108 ..      70     126 ..      54     144 .. 0.60
   3 ?    8.1   0.4   0.00036       2.1      68      99 ..     144     175 ..     135     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
     SCAB_CC  55 qekaevkklasflkqasedakklveeersfaraeiesaraavqrveealeeeeksskaskkqdveelkeevqearrikmlhqPskvmdle 144
                 +   ev++ a  l                                                       + + +a  i  + +P  v  ++
  CDO72951.1  29 NLSKEVEQNADQLH------------------------------------------------------NAASDAATIAQIKEPEAVSAVN 64 
                 33344444444444......................................................4444444444444444333322 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.011
     SCAB_CC  54 lqekaevk..klasflkqasedakklveeersfaraeiesaraavqrveealeeeek 108
                 l +k++v+  + a+ ++ a   a   ve+++  a   i  a+++v   ++ l   ++
  CDO72951.1  70 LSHKTDVAtsQGAADVQSAKATASSYVEQAKNLASSAIATAQSTVETGKQYLASAQQ 126
                 334444431134556666667777777777777777777777777666555554444 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00036
     SCAB_CC  68 kqasedakklveeersfaraeiesaraavqrv 99 
                   a+  ak  ve + + a+  ie+a+++v  v
  CDO72951.1 144 ESATATAKPYVESAAAAAQPHIEKAKSVVTGV 175
                 5688899*********************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1349  (0.0752412); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1556.29
//
Query:       CDO72952.1  [L=552]
Description: hypothetical protein BN946_scf185007.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-44  151.4  27.3      3e-44  151.4  27.3    1.4  1  MFS_1     Major Facilitator Superfamily
      1e-13   51.0   5.2    2.3e-13   49.9   5.2    1.6  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4  27.3   3.4e-48     3e-44       4     353 .]     111     501 ..     108     501 .. 0.81

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 3.4e-48
       MFS_1   4 aaflsalarsilgpalplalaedlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                  +f+s +++s+++pa+   +a+ ++i +s+ ++l ++++ l++a++ l+lG+ls+ +Gr rvll + l+f+++ l + f +++   l+v+r+l+G+g++
  CDO72952.1 111 FTFVSPISSSMVAPAAA-QIAKGFNIHHSFeANLTISIFVLAYAFGPLILGPLSEMYGRSRVLLGANLFFFAWNLGCGF-AQSEaQLMVFRFLAGFGGS 207
                 589**************.8999999988877******************************************777779.677779************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll.................peepperkrk 182
                 a ++ g+a+++d++ +eergrai+++s++  lG+++gp++gg++a+   Wr+vf++  iv+ ++  l+++ l                           
  CDO72952.1 208 APLACGGAVLSDMWVPEERGRAIAIYSLAPLLGPAIGPVAGGWIAEKSTWRWVFWATSIVAGISETLGFFILqetfaplllkrkanrirK--------- 297
                 ****************************************************************66544444455445544444444442......... PP

       MFS_1 183 spkeee.....................kgtgpaplvp.........awkallkdpvl.willialllfffgfsglltllplylqevlglsglllaglll 250
                                                   + +         ++ ++ + p + +i ++ +++ + +++++ t++p  + + ++ +   ++gl +
  CDO72952.1 298 -----QmdpekgpvkevrtifekpgqtR-----TF-KqflfvslcrPFLLFAREPIIqLISMYLAFIYG-VIYLVITTIPPVFTDIYHET-TGILGLHY 383
                 .....03333444444445565333331.....22.235333455567777777766434444444444.7778888888888*******.67888889 PP

       MFS_1 251 allalvgailallagrlsdr.......lgr......rrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappe 332
                  +l+l+ +i++ + +rl+d+         +      ++rl+  ++++l++ +gl++ ++    +++++    +++liG g+ ++f  +++++ d + + 
  CDO72952.1 384 IALGLGLFIASQVNARLLDKvyvmlkkR-NngqgepEFRLVTVMPATLVIPAGLLISGWGAQEHVHWIvpdiGYALIGAGMVVTFQGMQTYVIDAF-TV 480
                 999999999999********99986651.0556666************************888888888899************999999999999.59 PP

       MFS_1 333 eagtasglfntagslggalgp 353
                 +a++a++++++++s++g+ +p
  CDO72952.1 481 YAASALAAVSFFRSAAGFGFP 501
                 99*************998765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   5.2   2.5e-17   2.3e-13      19     245 ..     118     325 ..     101     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 2.5e-17
                 GGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHH CS
    Sugar_tr  19 igafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvG 117
                  +++++  +++   g++ ++s ++       l+ sif++  ++G l++g+l++++GR  +ll a+++f++ ++ +++a+   s  +l+v R+l+G+g  
  CDO72952.1 118 SSSMVAPAAAQIAKGFNIHHSFEA------NLTISIFVLAYAFGPLILGPLSEMYGRSRVLLGANLFFFAWNLGCGFAQ---SEAQLMVFRFLAGFGGS 207
                 455555555555566666666555......59***********************************************...88*************** PP

                 HHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH.HHHGGGS---HHHHHHTT-HHHHHHHHHHHH CS
    Sugar_tr 118 lasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll.lilllflPESPrylvekgkeeeakevlaklr 215
                 +  ++    +s +  ++ Rg+ + +y la  +G  ++ + g  +++ s    wr+ ++ +++ a +   ++++ l E+   l+ k+   +a ++ ++++
  CDO72952.1 208 APLACGGAVLSDMWVPEERGRAIAIYSLAPLLGPAIGPVAGGWIAEKST---WRWVFWATSIVAGISeTLGFFILQETFAPLLLKR---KANRIRKQMD 300
                 *****************************************99999888...******99999877626666889***99999999...8999999999 PP

                 HCHHHHHHHHHHHHHHHHHHH.....HTTH CS
    Sugar_tr 216 geedadrelaeekdsleaeqeeekaswkel 245
                  e+++ +e+  ++++  ++++ +     ++
  CDO72952.1 301 PEKGPVKEVRTIFEKPGQTRTFK-----QF 325
                 99999999999999988885544.....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3850.85
//
Query:       CDO72953.1  [L=244]
Description: hypothetical protein BN946_scf185007.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28   10.9   1.5       0.51   10.1   1.5    1.4  1  TrbL      TrbL/VirB6 plasmid conjugal transfer protein


Domain annotation for each model (and alignments):
>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   2.8e-05      0.51      57     107 ..     161     212 ..     145     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.8e-05
        TrbL  57 eaaggallssagsstsptldqlgldvadklleqassls...ffsniggilagll 107
                 +  +g+ +s++gs++  +l +l+++ a+kl++q+++ s     ++++g+++ ++
  CDO72953.1 161 KFTSGGASSGGGSQS--QLISLAMAEASKLFDQSGGASsgnKQDAVNGAAMTIM 212
                 455666677766666..9********************7743333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.58
# Mc/sec: 1261.47
//
Query:       CDO72954.1  [L=409]
Description: hypothetical protein BN946_scf185007.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-06   28.2   3.1    3.3e-06   27.1   3.1    1.6  1  Mating_N  Mating-type protein beta 1
  ------ inclusion threshold ------
       0.24   10.7   0.1       0.36   10.1   0.1    1.2  1  PPV_E2_N  E2 (early) protein, N terminal


Domain annotation for each model (and alignments):
>> Mating_N  Mating-type protein beta 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   3.1   3.6e-10   3.3e-06      14      94 ..       4      86 ..       2      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.6e-10
    Mating_N 14 vrqtLdalrkdFfssLrgesealstFlsawskfdellqsc..hdsLseeTleliysfssliatvssgllelesekeaiedels 94
                ++++L ++++dF+++L++++eal++F + w+++ + ++     dsL+ +Tl l++s s  i+ +++  ++l ++++a  +el+
  CDO72954.1  4 LTKRLLSAEDDFLTALEQGTEALASFDRHWEALMNEIDRAmeFDSLDYDTLILVHSTSLRISVLADASIDLFRTQDAYTSELM 86
                6788999***************************9999863358**************************9999999888875 PP

>> PPV_E2_N  E2 (early) protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1     4e-05      0.36       1      39 [.       1      39 [.       1      43 [. 0.96

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4e-05
                HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH CS
    PPV_E2_N  1 meklserldalqeellelyekdsssLedqikywellRkE 39
                m++l++rl  + ++ l+ +e+ ++ L++  ++we+l +E
  CDO72954.1  1 MSTLTKRLLSAEDDFLTALEQGTEALASFDRHWEALMNE 39
                899*******************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2643.26
//
Query:       CDO72955.1  [L=775]
Description: hypothetical protein BN946_scf185007.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.6e-124  414.3   0.0   1.1e-123  413.9   0.0    1.1  1  Peptidase_M3   Peptidase family M3
  ------ inclusion threshold ------
       0.06   13.5   0.0       0.29   11.3   0.0    2.2  1  CUT            CUT domain
       0.19   12.0   0.1       0.42   10.9   0.1    1.5  1  Peptidase_M91  Effector protein


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.9   0.0  1.9e-127  1.1e-123       1     447 [.     284     748 ..     284     759 .. 0.93

  Alignments for each domain:
  == domain 1  score: 413.9 bits;  conditional E-value: 1.9e-127
                   HHHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   1 llkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkk 97 
                   +++++pd+e Rk++y+a +s+ +       + ++le+ll+ r elA+l+g+esya++al+dkmak+pe+v+ fl++l++++r ++++ l++l++ k+
    CDO72955.1 284 IMRSAPDEEARKKVYMAANSSTS------HQIETLERLLRARGELARLVGKESYAHMALADKMAKSPENVQHFLDALMDQTRLYARRALRNLSMRKQ 374
                   599******************44......679***************************************************************** PP

                   HCCT-S..SS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEEE CS
  Peptidase_M3  98 kelgle..gelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylDl 192
                   ++l+ +  + +qpwD++YY+  +      + ++   + ++l+tv + l++lf+ L+Gi+++ +++a ge wh dVrkleVvde  + g++g+iy Dl
    CDO72955.1 375 AHLKTSpfPIIQPWDRDYYCPPEP-----PAPPVPLPPLTLGTVFMALSRLFRALYGISLRLAEPAPGEAWHVDVRKLEVVDE--EHGVLGWIYADL 464
                   **888789***************9.....88888999**********************************************..************ PP

                   C--TTS-SS-EEEEEE--B...T...................................TS-B--EEEEEEEEE---BT.TS--B--HHHHHHHHHHH CS
  Peptidase_M3 193 yerkgKrggAasfglvksr...e...................................dgtrqlpviylllNftkpss.kkPsLLtldevetLfHEf 250
                   ++r gK  gAa++++++sr   +                                      +qlpv++ll++f +p+  + P++L+++ev tLfHE+
    CDO72955.1 465 FARSGKPAGAAHYTVRCSRrtdDddeegdlmfaderdrtavqlsrdfeverqsrlpgqPLIFQLPVVVLLCEFMRPTVaSGPTVLDWHEVLTLFHEM 561
                   ******************97651667899999999********************8765559*************986499**************** PP

                   HHHHHHHC--BSSGGGSTT-S-CCCCCHHHHHHHHGGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGH CS
  Peptidase_M3 251 GHsmHsllsrteysnvsgtnvpidfvElpSqlmEnlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeq 347
                   GH+mHs+++rtey nvsgt++++dfvElpS+lmE++l++ +vl++++++ e       e   + +  ++ + ++++  q+ +a++dq++H++a + +
    CDO72955.1 562 GHAMHSMIGRTEYHNVSGTRCATDFVELPSILMEHFLNSSSVLSLFQRDLE------GEFCHTARPHEDPCRSIDTHTQILLAMLDQIYHSSAVLHA 652
                   **********************************************77744......44444555667899************************88 PP

                   H....HHHHHHHHHHCTTSCTTBTTSSGGGC-CCCHTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCS CS
  Peptidase_M3 348 ilkkdlletyaelrkkflglpvapdeasqasFghlfahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflg 444
                      +d+++ ++ l ++  ++p+ p++++q++Fghlf  gY+a+YYsyl+++++a+++++k+f+e plnr  Ger ++e+L+ Gg++dp+ ++ ++  
    CDO72955.1 653 --GFDSTAALETLSSDRGLIPYIPGTSWQTQFGHLF--GYGATYYSYLFDRAIASRVWSKLFSEAPLNRDMGERLKQEVLRFGGGRDPWVMVGTLVD 745
                   ..699*******************************..*************************99**************************987765 PP

                   S-- CS
  Peptidase_M3 445 rep 447
                      
    CDO72955.1 746 SAD 748
                   555 PP

>> CUT  CUT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.9e-05      0.29      39      69 ..     132     163 ..      87     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
         CUT  39 tlselLr..kPkp.wenlkagrevyirmqnwLnl 69 
                  l+elLr  +P p w++  +  evy +m +++n 
  CDO72955.1 132 DLAELLRnaHPDPaWVQSAD--EVYEKMCEFMNV 163
                 479****777777*******..**********96 PP

>> Peptidase_M91  Effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.1e-05      0.42      96     121 ..     555     581 ..     534     589 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
  Peptidase_M91  96 v.LyHElaHaydalngtlddgeydgkd 121
                      L+HE+ Ha++++ g ++  +++g++
     CDO72955.1 555 LtLFHEMGHAMHSMIGRTEYHNVSGTR 581
                    34***************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 4947.43
//
Query:       CDO72956.1  [L=553]
Description: hypothetical protein BN946_scf185007.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0058   17.1   0.7      0.014   15.9   0.8    1.8  1  WSD       Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  ------ inclusion threshold ------
        4.5    6.5   6.8        7.5    5.8   6.8    1.2  1  NOA36     NOA36 protein


Domain annotation for each model (and alignments):
>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.8   1.6e-06     0.014       3      44 ..     194     242 ..     192     377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
         WSD   3 lkpLGkDRfyrrYwlfdkgtgrlfveepsegdievllekre........e 44 
                 l pLG+D+  +rYw+  + ++r+++ ++  + ++  +  ++        +
  CDO72956.1 194 LIPLGQDKDRKRYWVV-DDSPRVYLSTNPWKITATFQTISStrdeylavV 242
                 68**************.999999999654434333333333444555551 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.8   0.00084       7.5     258     292 ..     321     356 ..     297     366 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00084
       NOA36 258 aylkalasgddeddegdedddddd.deedddeeedd 292
                 ay ++  s+dd dd+++e++dddd de+ d ++++d
  CDO72956.1 321 AYINNPPSDDDADDYANEEQDDDDyDEQMDVDDDED 356
                 445555555555554444333332022222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3717.25
//
Query:       CDO72957.1  [L=140]
Description: hypothetical protein BN946_scf185007.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   53.5   8.2    5.9e-14   52.6   8.2    1.4  1  DUF1754   Eukaryotic family of unknown function (DUF1754)
     0.0016   17.8   0.2     0.0027   17.1   0.2    1.3  1  DUF4191   Domain of unknown function (DUF4191)
  ------ inclusion threshold ------
      0.024   14.3  12.7       0.03   13.9  12.7    1.1  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> DUF1754  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   8.2   9.9e-18   5.9e-14       1      98 []       4     104 ..       4     104 .. 0.67

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 9.9e-18
     DUF1754   1 eysevvgGkLKLKgkkivke..gvkKkkkkkkkkskekkeeekekeeeekssaesdaesekdk...eeeeddseekkekeeeqenlTeAErkfeevrkK 94 
                 ey++ +gG+LKLKg + ++    +kKkk k+k+k+k+k++     e++ k  +   + +++ k    +++  s+    ++++ e +T AEr+fee +kK
  CDO72957.1   4 EYDFRPGGSLKLKGGV-TDGgiVKKKKKSKSKDKDKDKSASPGAGEDRVKALERAIK-EDEAKlgtPSGSGRSSPAVASTSATERKTAAERRFEEIQKK 100
                 7999**********99.5445445555555555566666666666666666666663.44444000344445555667788899*************** PP

     DUF1754  95 rlke 98 
                 rl e
  CDO72957.1 101 RLAE 104
                 *975 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   4.6e-07    0.0027     165     207 ..      96     136 ..      92     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.6e-07
     DUF4191 165 qvplkkLqktlkklprnltkaeveevekRLkaldkksklpiPk 207
                 +++ k+L++++ kl r+ +k++v+e +++L+al+  ++  iPk
  CDO72957.1  96 EIQKKRLAEKVAKLARKTHKDRVNEFNSKLEALS--EHHDIPK 136
                 677799***************************4..6788888 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  12.7   5.1e-06      0.03      17     120 ..      26     122 ..      19     138 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-06
       SR-25  17 ekkrkksskdssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkk.kkkkkkkkkkekk 114
                 +kk+k  skd+ ++ sas+  ++ + +a e++         k  +++ ++ s s  ss   +s+s+   +  +++r  + +kk+  +k  k  +k +k 
  CDO72957.1  26 KKKKKSKSKDKDKDKSASPGAGEDRVKALERA--------IKEDEAKLGTPSGSGRSSPAVASTSATERKTAAERRFEEIQKKRLaEKVAKLARKTHKD 116
                 45555556777788888888888776666433........33333334444444444444444444444444444444444443303334445555666 PP

       SR-25 115 kakeka 120
                 + +e +
  CDO72957.1 117 RVNEFN 122
                 655433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1605  (0.0895198); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1061.25
//
Query:       CDO72958.1  [L=1141]
Description: hypothetical protein BN946_scf185007.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-24   85.8   5.6      5e-24   84.8   5.6    1.6  1  DUF1751   Eukaryotic integral membrane protein (DUF1751)
    2.6e-14   53.1   0.5    6.9e-14   51.7   0.5    1.8  1  Vps51     Vps51/Vps67
  ------ inclusion threshold ------
       0.12   11.9   0.7       0.31   10.6   0.0    2.0  2  Vps5      Vps5 C terminal like
       0.14   12.4   0.7       0.54   10.6   0.7    2.0  1  KxDL      Uncharacterized conserved protein
       0.44   10.6   9.2          1    9.3   9.2    1.6  1  Rhomboid  Rhomboid family


Domain annotation for each model (and alignments):
>> DUF1751  Eukaryotic integral membrane protein (DUF1751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   5.6   1.4e-27     5e-24       1      99 []      53     152 ..      53     152 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 1.4e-27
     DUF1751   1 PgallpypwtlltasfveqnvwkvlvslltlllggkylErlWgskEllkFilvvnvitnllvvlltlllylvtkseelll.vpisGlagilagflvalk 98 
                 Pg +++ypwt+lt++fve++++++l+ l+ +    +ylErlWg+ E++kF++v+ +++n++++ l++l y+v+k+ ++l+   ++G +++++g+lva++
  CDO72958.1  53 PGSSIFYPWTFLTSAFVESTIIELLFTLIVVPPSLRYLERLWGAVEIIKFVAVTITVSNVIAFGLCWLEYMVFKNPTFLYgQAYHGQMALQIGILVAFT 151
                 8999**********************************************************************************************9 PP

     DUF1751  99 Q 99 
                 Q
  CDO72958.1 152 Q 152
                 9 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.5   1.9e-17   6.9e-14       1      85 [.     304     384 ..     304     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.9e-17
       Vps51   1 ldspdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaiskia 85 
                 +d ++ d++++++    k+t++e++ v+++l++e++a+++el+ +V+++Y++L++as  I ++ ++ + + + l+e+++++++i+
  CDO72958.1 304 IDLHNIDPDELFT----KHTISEIKLVQSRLRAEAEAKQEELRLMVGERYRDLLEASTSILNLAKSSKHVLEALEEMRDTVNSIT 384
                 57899********....*************************************************************9999886 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.6e-05      0.31      88     152 ..     661     725 ..     658     753 .. 0.90
   2 ?   -3.1   0.1       1.3   4.6e+03      56     104 ..     834     881 ..     819     887 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.6e-05
        Vps5  88 aeveerikellerqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqelskkkeqle 152
                 ++ + ++++ l+   ++  ++L e + + l  ++sv++v + R  l q + +ae  l   +e+le
  CDO72958.1 661 SDFHSQVQQKLDSWFKKAIYELREALVDWLTPLESVRDVWDVRRTLLQWLGNAEGLLPSEREALE 725
                 6788999999999999**************************************99999999887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
        Vps5  56 elasataelakslesLaslelskslsralsqlae.veerikellerqaeq 104
                 +l   +a l ksl+  +++el k+ls+a+   +e + ++i e+ler+a +
  CDO72958.1 834 QLRDDLACLQKSLD--SKSELIKRLSEAYRLDSEsTCKNICEVLERTATH 881
                 44433333333333..5677777777777665552345666666666655 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00015      0.54       5      75 ..     314     384 ..     312     388 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
        KxDL   5 avdsedldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslk 75 
                 ++ +++++ei  +Q+ + ++ ++k++eL  +  +  + l ++++ + + +k +k v + Le ++ +++s++
  CDO72958.1 314 LFTKHTISEIKLVQSRLRAEAEAKQEELRLMVGERYRDLLEASTSILNLAKSSKHVLEALEEMRDTVNSIT 384
                 788999*************************************************************9996 PP

>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.2   0.00029         1       7     118 ..      60     182 ..      57     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00029
                 TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S..............-EESSHHHHHHHHHHHHHHHHCCC CS
    Rhomboid   7 lwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses...........plvGaSGaifgllgallvlvprnr 94 
                  w++lts+f+   ++ llf ++++      ler +G ++++ + +++ ++++++ + +    +               G      g+l+a++  +p+++
  CDO72958.1  60 PWTFLTSAFVESTIIELLFTLIVVPPSLRYLERLWGAVEIIKFVAVTITVSNVIAFGLCWLEYMvfknptflygqAYHGQMALQIGILVAFTQVIPEHQ 158
                 7*********************************************99998888777766655568899999999999********************* PP

                 CGS----HC...CCCCCCCCCCHH CS
    Rhomboid  95 kllrkliiallllllfillnlvlg 118
                  +l++++ a +  l+++++ + + 
  CDO72958.1 159 VQLFGVLKARVKTLPMAYVTFSTV 182
                 *********666666555544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 7636.89
//
Query:       CDO72959.1  [L=227]
Description: hypothetical protein BN946_scf185007.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1643.23
//
Query:       CDO72960.1  [L=70]
Description: hypothetical protein BN946_scf185007.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-16   58.1   0.0    7.2e-16   57.9   0.0    1.1  1  SecE      SecE/Sec61-gamma subunits of protein translocation 


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     4e-20   7.2e-16       2      54 ..      14      66 ..      13      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 4e-20
                HCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
        SecE  2 kFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfskli.nll 54
                +F+ +  ++l ++t+P+rkE+++++++V++++++mg+++++v+l++ ++i n+l
  CDO72960.1 14 EFIHDGQQFLTRCTKPSRKEFIQISKAVAIGFAVMGFIGYFVKLIH-IPInNIL 66
                8********************************************9.***5655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 525.76
//
Query:       CDO72961.1  [L=790]
Description: hypothetical protein BN946_scf185007.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-19   67.7   0.2    0.00092   19.4   0.0    7.9  7  PPR_2     PPR repeat family
    8.8e-11   41.3   9.3      0.029   14.6   0.1    8.1  9  PPR       PPR repeat
    8.5e-07   28.5   0.0    0.00059   19.3   0.0    3.4  3  PPR_long  Pentacotripeptide-repeat region of PRORP
    0.00013   21.6   4.0       0.02   14.6   0.0    5.1  7  PPR_1     PPR repeat
    0.00024   21.1   0.0         18    5.5   0.0    5.8  8  PPR_3     Pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.019   15.4   0.2       0.52   10.9   0.0    2.9  2  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0045        14      29      48 ..     463     482 ..     460     484 .. 0.90
   2 !   11.7   0.0   7.6e-05      0.23       1      43 [.     470     516 ..     470     522 .. 0.86
   3 ?    4.8   0.0     0.011        32      16      50 .]     525     563 ..     514     563 .. 0.80
   4 !    7.4   0.0    0.0017         5      23      45 ..     578     600 ..     575     605 .. 0.89
   5 !   10.7   0.0   0.00015      0.46       1      49 [.     641     688 ..     641     689 .. 0.91
   6 !    5.6   0.0    0.0059        18       8      37 ..     682     711 ..     676     713 .. 0.89
   7 !   19.4   0.0   3.1e-07   0.00092       3      46 ..     712     758 ..     710     761 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0045
       PPR_2  29 MkkrglePnsyTysilikgl 48 
                  k+r   P++ Ty  li++l
  CDO72961.1 463 RKQRDRHPSVATYQLLIRAL 482
                 5889999***********98 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.6e-05
       PPR_2   1 pdvvtyNtlIsglc...k.kgkveeAfklfneMkkrglePnsyTysi 43 
                 p+v ty  lI +l    + ++ +  A++l ++M++ gl+ ++ T  +
  CDO72961.1 470 PSVATYQLLIRALTvsmNiEKYLPVAVSLIEDMQRFGLRLDPQTTAS 516
                 8999*********777753777999*****************99655 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.011
       PPR_2  16 kgkveeAfklfneM....kkrglePnsyTysilikglck 50 
                    +eeAf+++  M    +++g + n+  y  +++++c+
  CDO72961.1 525 SSTPEEAFEMYRIMcvseQSNGASLNEEGYVAVLDAFCR 563
                 55689*********666667899999999******9997 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0017
       PPR_2  23 fklfneMkkrglePnsyTysili 45 
                 f++ n+M++rg++  ++ y++++
  CDO72961.1 578 FSIINDMRERGVPIGPKVYTVIL 600
                 6789*****************98 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00015
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglc 49 
                 pd+  yN l++++ ++g + eA+++++     gl  ++++  i++++++
  CDO72961.1 641 PDTQLYNQLMDAYQRAGCFIEACRVWQMLFTSGL-FSDVSVVIILDACA 688
                 89999*********************99999999.88889999999875 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0059
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrglePn 37 
                 +++++++ +g++++A+++++  k+ g+++n
  CDO72961.1 682 IILDACAYAGAYDMAVRIYSMLKDVGFPMN 711
                 799********************9999887 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 3.1e-07
       PPR_2   3 vvtyNtlIsglckkgkveeAfklfn.eMkkr..glePnsyTysilik 46 
                   ++Nt++ +lc+ gk++eA+k+   eM  r  g+eP+  +  il+k
  CDO72961.1 712 LKVWNTYLECLCRLGKLDEAMKVAClEMTGRddGVEPDKESVRILLK 758
                 568*******************97559998777***********997 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         3   9.1e+03       2      27 ..     180     205 ..     179     205 .. 0.81
   2 ?   -0.9   0.0      0.83   2.5e+03       5      15 ..     264     274 ..     261     280 .. 0.82
   3 ?    2.1   0.0     0.098   2.9e+02      19      31 .]     495     507 ..     473     507 .. 0.80
   4 ?    1.0   0.0      0.21   6.3e+02      16      27 ..     528     539 ..     516     541 .. 0.88
   5 ?   -2.2   0.0       2.2   6.5e+03       3      12 ..     554     563 ..     554     564 .. 0.87
   6 ?   -0.3   0.0      0.56   1.7e+03      21      31 .]     579     589 ..     578     589 .. 0.87
   7 !   13.0   0.1   3.1e-05     0.094       3      30 ..     646     673 ..     645     674 .. 0.90
   8 !    6.4   0.0    0.0041        12       3      31 .]     680     708 ..     678     708 .. 0.88
   9 !   14.6   0.1   9.9e-06     0.029       2      22 ..     714     734 ..     713     735 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3
         PPR   2 tynslIsgycknGkleeAlelfkeMk 27 
                 t+ +l+   +  ++l+  +e +++M+
  CDO72961.1 180 TWHALLELAAELRDLHVIEEALRQMR 205
                 89999998888888888888888885 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
         PPR   5 slIsgycknGk 15 
                 ++++gy + G+
  CDO72961.1 264 TIVDGYTRDGQ 274
                 899******97 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.098
         PPR  19 AlelfkeMkekGi 31 
                 A++l+++M++ G+
  CDO72961.1 495 AVSLIEDMQRFGL 507
                 8999999999985 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.21
         PPR  16 leeAlelfkeMk 27 
                 +eeA+e+++ M 
  CDO72961.1 528 PEEAFEMYRIMC 539
                 79******9995 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 2.2
         PPR   3 ynslIsgyck 12 
                 y ++++++c+
  CDO72961.1 554 YVAVLDAFCR 563
                 7799*****9 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.56
         PPR  21 elfkeMkekGi 31 
                 +++++M+e+G+
  CDO72961.1 579 SIINDMRERGV 589
                 7899*****97 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 3.1e-05
         PPR   3 ynslIsgycknGkleeAlelfkeMkekG 30 
                 yn l+++y ++G++ eA ++++ +  +G
  CDO72961.1 646 YNQLMDAYQRAGCFIEACRVWQMLFTSG 673
                 9********************9887666 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.0041
         PPR   3 ynslIsgycknGkleeAlelfkeMkekGi 31 
                   +++++++ +G +++A++++  +k+ G+
  CDO72961.1 680 VVIILDACAYAGAYDMAVRIYSMLKDVGF 708
                 56899*****************9998775 PP

  == domain 9  score: 14.6 bits;  conditional E-value: 9.9e-06
         PPR   2 tynslIsgycknGkleeAlel 22 
                 ++n+ + ++c+ Gkl+eA+++
  CDO72961.1 714 VWNTYLECLCRLGKLDEAMKV 734
                 6******************96 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.027        80      27      91 ..     375     438 ..     361     447 .. 0.74
   2 ?    2.1   0.0     0.034     1e+02      29      96 ..     494     557 ..     463     607 .. 0.63
   3 !   19.3   0.0     2e-07   0.00059      99     191 ..     686     781 ..     658     788 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHSSS---HH.HHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HH CS
    PPR_long  27 aaaAlelydkavaegvrlaqy.hynvllylcskaeaaseskknkalargfevfeamkakgvspnEa 91 
                  a  lely  a ++g++l++   y+v+  l+++   ++  + ++a++r++  +++  a+  ++ Ea
  CDO72961.1 375 NASVLELYRFAQSNGITLTSDmLYRVIKPLLTSR-GPERPT-EQAIDRALDLYRDFVARSDRAKEA 438
                 56779**********9997651677777777555.454445.469999988888887766555555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHH.TT----HHHHHHH CS
    PPR_long  29 aAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamka.kgvspnEatvtal 96 
                  A++l +++ + g+rl +++  ++l l+ +++++ e      + + +++++  ++ +g+s nE  + a+
  CDO72961.1 494 VAVSLIEDMQRFGLRLDPQTTASVLILLMHSSSTPE-----EAFEMYRIMCVSEQsNGASLNEEGYVAV 557
                 578888888888888888887777777766643322.....2334555555544436666676544444 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 2e-07
                 HHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHH.HH..HHCT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTS CS
    PPR_long  99 laaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkalevee.hl..kasgveleEaelaaLLkvsakagredkvYelLhklreavr 191
                  +a ++  d+a ++ + ++ +g    L+ ++  L ++c++g++d a++v    +  +  gve++ + +  LLk ++k+ +e+ v   L+++   v 
  CDO72961.1 686 ACAYAGAYDMAVRIYSMLKDVGFPMNLKVWNTYLECLCRLGKLDEAMKVAClEMtgRDDGVEPDKESVRILLKFAMKTNQEMEVRGRLKRYLPRVC 781
                 57888999****************************************964256225679***********************9998888877665 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.8       4.7   1.4e+04       8      12 ..     172     176 ..     171     176 .. 0.87
   2 ?   -1.1   0.0      0.52   1.5e+03       9      21 ..     261     273 ..     258     274 .. 0.85
   3 ?   -0.2   0.0      0.29   8.6e+02       4      17 ..     469     482 ..     467     482 .. 0.89
   4 ?   -2.5   0.2       1.4   4.3e+03      24      33 ..     529     538 ..     529     539 .. 0.86
   5 ?   -2.7   0.0       1.7   5.2e+03      12      19 ..     556     563 ..     548     563 .. 0.83
   6 ?    2.8   0.0     0.033        99       4      29 ..     640     665 ..     638     668 .. 0.84
   7 !   14.6   0.0   6.6e-06      0.02       6      29 ..     711     734 ..     706     735 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4.7
                 HHHHH CS
       PPR_1   8 vTYNt 12 
                 vTY+t
  CDO72961.1 172 VTYTT 176
                 9***8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHTS CS
       PPR_1   9 TYNtLIdGlCkaG 21 
                 T  t++dG+ ++G
  CDO72961.1 261 TLRTIVDGYTRDG 273
                 6679*****9998 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.29
                 ---HHHHHHHHHHH CS
       PPR_1   4 kPdvvTYNtLIdGl 17 
                 +P v TY  LI +l
  CDO72961.1 469 HPSVATYQLLIRAL 482
                 699********876 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHH CS
       PPR_1  24 deAfelfdeM 33 
                 +eAfe+ + M
  CDO72961.1 529 EEAFEMYRIM 538
                 69****9988 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 1.7
                 HHHHHHHH CS
       PPR_1  12 tLIdGlCk 19 
                  ++d++C+
  CDO72961.1 556 AVLDAFCR 563
                 5789***8 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.033
                 ---HHHHHHHHHHHHHTS-HHHHHHH CS
       PPR_1   4 kPdvvTYNtLIdGlCkaGrvdeAfel 29 
                  Pd+  YN L d++ +aG   eA+++
  CDO72961.1 640 TPDTQLYNQLMDAYQRAGCFIEACRV 665
                 69************999977777766 PP

  == domain 7  score: 14.6 bits;  conditional E-value: 6.6e-06
                 -HHHHHHHHHHHHHTS-HHHHHHH CS
       PPR_1   6 dvvTYNtLIdGlCkaGrvdeAfel 29 
                 +   +Nt + +lC+ G++deA+++
  CDO72961.1 711 NLKVWNTYLECLCRLGKLDEAMKV 734
                 6667899999************97 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0061        18      16      42 ..     179     205 ..     175     209 .. 0.90
   2 ?   -2.4   0.0       1.8   5.2e+03      18      54 ..     300     336 ..     298     340 .. 0.79
   3 ?    0.2   0.0      0.27     8e+02      12      25 ..     469     482 ..     461     492 .. 0.64
   4 ?   -0.4   0.0      0.43   1.3e+03       1      18 [.     497     514 ..     497     524 .. 0.78
   5 ?   -2.5   0.0       1.9   5.6e+03      36      46 ..     579     589 ..     574     604 .. 0.56
   6 ?   -0.9   0.0       0.6   1.8e+03      13      29 ..     641     657 ..     634     666 .. 0.75
   7 !    4.9   0.0    0.0094        28      21      54 ..     683     716 ..     678     724 .. 0.84
   8 ?    1.4   0.0      0.11   3.4e+02       5      38 ..     702     735 ..     698     749 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0061
       PPR_3  16 vtYthLLtayanagnkklalevlermk 42 
                  t+ +LL+++a  ++++ ++e l +m+
  CDO72961.1 179 STWHALLELAAELRDLHVIEEALRQMR 205
                 6889**********************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
       PPR_3  18 YthLLtayanagnkklalevlermkkkgikPtvvtyN 54 
                 ++ LL   a+ + ++ +l+   r  + g  P+ +t+ 
  CDO72961.1 300 FNKLLADLALRKGRDHVLRACRRFTQLGFVPSEDTFF 336
                 6788888888888888888888888888888888885 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.27
       PPR_3  12 kldvvtYthLLtay 25 
                  ++v tY  L++a 
  CDO72961.1 469 HPSVATYQLLIRAL 482
                 45666666666654 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.43
       PPR_3   1 silremerkgikldvvtY 18 
                 s++++m+r g++ld  t 
  CDO72961.1 497 SLIEDMQRFGLRLDPQTT 514
                 5899*********96665 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.9
       PPR_3  36 evlermkkkgi 46 
                  +++ m++ g+
  CDO72961.1 579 SIINDMRERGV 589
                 45555555553 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.6
       PPR_3  13 ldvvtYthLLtayanag 29 
                 +d   Y+ L+ ay +ag
  CDO72961.1 641 PDTQLYNQLMDAYQRAG 657
                 56667788888877765 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.0094
       PPR_3  21 LLtayanagnkklalevlermkkkgikPtvvtyN 54 
                 +L a+a+ag ++ a ++   +k +g   ++  +N
  CDO72961.1 683 ILDACAYAGAYDMAVRIYSMLKDVGFPMNLKVWN 716
                 89********************998766665555 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.11
       PPR_3   5 emerkgikldvvtYthLLtayanagnkklalevl 38 
                  +++ g+ +++  +++ L+   + g+++ a++v 
  CDO72961.1 702 MLKDVGFPMNLKVWNTYLECLCRLGKLDEAMKVA 735
                 567889999**********************995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.22   6.5e+02       5      40 ..     276     313 ..     274     314 .. 0.79
   2 ?   10.9   0.0   0.00017      0.52       4      47 ..     690     734 ..     688     735 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
      TPR_19   5 gdyaeAlalleqalqedpk..naearllLAeallalgq 40 
                 g  +eA  ++ +al  + +  +++   lLA++ l  g+
  CDO72961.1 276 GFAQEAEFIYVSALGNSQDvaHDYFNKLLADLALRKGR 313
                 5579999999999955444449999999****999987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
      TPR_19   4 egdyaeAlalleqalqe..dpknaearllLAeallalgqldeAeal 47 
                 +g y+ A+++++ + ++   p n+ ++  + e+l  lg ldeA+++
  CDO72961.1 690 AGAYDMAVRIYSML-KDvgFPMNLKVWNTYLECLCRLGKLDEAMKV 734
                 78899998888885.4448999*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5475.43
//
Query:       CDO72962.1  [L=1022]
Description: hypothetical protein BN946_scf185007.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-180  601.2   0.0   3.1e-171  570.0   0.0    2.5  3  GDC-P            Glycine cleavage system P-protein
    7.7e-05   22.1   0.1    0.00014   21.2   0.1    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00011   21.3   0.1    0.00046   19.2   0.1    1.9  2  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.0   0.0  5.2e-175  3.1e-171       1     430 []      49     483 ..      49     483 .. 0.98
   2 !   28.6   0.0     1e-10   6.2e-07      20     286 ..     494     778 ..     491     794 .. 0.75
   3 ?   -3.2   0.1      0.47   2.8e+03     331     364 ..     806     839 ..     801     847 .. 0.84

  Alignments for each domain:
  == domain 1  score: 570.0 bits;  conditional E-value: 5.2e-175
                 HHH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S-------...--HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS- CS
       GDC-P   1 erhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleap...ksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewyta 96 
                 +rhigp+++++ +mL++lG++s+d+++ ++vP++i+++ +   +++    sE+ell++ +++ ++nk +ks+iG+Gy +  +P+vi+rni+e+p+wyt+
  CDO72962.1  49 DRHIGPDDHEVSHMLAQLGYDSMDAFVADTVPEKIRVPSTSVSNESipaLSESELLQRAKELGKENKPFKSYIGMGYHNAVVPPVILRNIMESPAWYTP 147
                 69***********************************9998888877779************************************************* PP

                 -S-SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-.. CS
       GDC-P  97 YtPYqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkkakkvvvdkkvhpqtlevlktrakglgieivevdlteekvtd. 194
                 YtPYq+Ei+qGrLe+l+nfqt+v+ lt +dianasllDe+tAaaE +++a+  + +k+++++ d+ v pqt++vlktrakg+gi++v+ d  ++ ++d 
  CDO72962.1 148 YTPYQPEIAQGRLESLVNFQTMVMSLTSMDIANASLLDESTAAAEGMVMAFTGTNGKKRTFFADNGVSPQTIAVLKTRAKGFGINLVVGDALADLKDDa 246
                 ******************************************************************************************999999886 PP

                 ..S-EEEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG--S-EEEEEE CS
       GDC-P 195 kekevagvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvGvsk 293
                  + ++ gvlvqyp+++G+++d++ l+e+++ + +l+v+a+dllaLt+lkpPge+gaDiv+G++ rfGvP gyGGPha+ffA+++klkRk+PGRl+G s+
  CDO72962.1 247 LQADLCGVLVQYPDVNGAVKDFSGLAESVHATGALLVCATDLLALTMLKPPGEWGADIVLGNSARFGVPAGYGGPHAAFFACTDKLKRKMPGRLIGRSR 345
                 789************************************************************************************************ PP

                 BTTS-EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SSBSSEEEEE--T..TTHHH CS
       GDC-P 294 DaegkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkkffdtllievee..kaaek 390
                 D +gk+a+rlalqtREqHirR+kAtsniCt+qaLlAn+aa+yavyhG+  l++ia+++h  t+i+++ ++  ++ + + ++ffdtl   v+   k ae+
  CDO72962.1 346 DVNGKPAYRLALQTREQHIRREKATSNICTSQALLANMAAMYAVYHGPVNLQRIAQKVHGFTHIIKNTVEG-FGYKAVTAQFFDTLSFDVSGvvKDAEA 443
                 *********************************************************************88.7999999**********9997666777 PP

                 HHHHHHHTTEE-EEESTTEEEEE--TT--HHHHHHHHHHH CS
       GDC-P 391 vlkkaekeglnlrkvelktvgialdEtvtkedieallkvl 430
                 v + a+++g+nlr+ ++ +vg++ldE v +edi +l++v+
  CDO72962.1 444 VHSSALAAGINLRRIDDRHVGLTLDESVGTEDIVTLINVF 483
                 *************************************997 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1e-10
                 -SSHHHHHHHHS-GGGB--S-------.....--HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSG.GG-HHHHHH CS
       GDC-P  20 lkslddliekavPkeiklkkelkleap.....ksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqa.EisqGrLea 111
                 +++l +  e a+P++++ + +  l++p     +sE+e+l+ + ++ sk+   ++ +i  G   ++l ++ +   l  pe+     P+ + +  +G  + 
  CDO72962.1 494 ASDLAAAQEIAIPENLRRTSK-FLPHPvfnahHSETEMLRYIYHLQSKDLGlTHAMIPLGSCTMKLNSTSSMIPLTWPEFAN-IHPFAPkDQVKGYEQV 590
                 567777778899***976554.45555566669****************987999*************999988999*9965.56777735679999** PP

                 HHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHH....HHH-SSS..--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-........... CS
       GDC-P 112 llnfqtlvadltGldianasllDegtAaaEAvlla....araskkk..akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtd.......... 194
                 + +  + ++ +tG++    sl  ++ Aa+E + l+    ++ s+++  ++  ++  + h  +       a   g+++v v++++++  d          
  CDO72962.1 591 IKELESYLCKITGFH--ACSLQPNSGAAGEYAGLSviraYHESRGEghRDICLIPVSAHGTN----PASAVMAGLKVVPVKTHADGNLDledlkakakk 683
                 *************97..579*********977664211144455542233344444444322....233444455555555555544444555566665 PP

                 ..S-EEEEEEEES-TTSB---.-HHHHHHHHHTT-EEEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG--S CS
       GDC-P 195 kekevagvlvqypnteGried.lkelvekakkkkslvvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiPG 286
                 +++++a+ ++ yp+t+G  e+ +++  + ++++   v +  a+l a   l+ P+ +g D+  +   + f +P g GGP +g + v+e+l+  +P 
  CDO72962.1 684 HKDKLAAFMITYPSTFGVFEHgVQDACKIIHDNGGQVYLdGANLNAQIGLTNPATCGGDVChMNLHKTFAIPHGGGGPGVGPICVAEHLAPFLPS 778
                 67899************99877999*******99998882567777777***********83556788******************999887775 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       GDC-P 331 laalyavyhGkeglkeiarrihkkteilakelkk 364
                 ++  y+ ++G +gl e ++  + +++++a+ l  
  CDO72962.1 806 ISWAYIKMLGGSGLSEASKVALLNANYMAHRLSG 839
                 66789999********************999865 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   2.4e-08   0.00014      25     203 ..     582     755 ..     578     759 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.4e-08
                      -CCCT--HHHHHHHHHHHHHTT-SEEEEES.-HHHHHHHHHHHH--TTEEEEEETT........-HHHHSSTTHHHHCC--EEEEE-EBTTTBE CS
  Beta_elim_lyase  25 desYgedktvnrLedavaelfgkeaalfvp.qGtaAnsillkillqrgeevivtep........ahihfdetgaiaelagvklrdlknkeaGkm 109
                      d++ g ++ +++Le ++++++g+ a    p +G a++   l+++   +e+   +++        ah+   ++ a a++ag k++++k+ ++G++
       CDO72962.1 582 DQVKGYEQVIKELESYLCKITGFHACSLQPnSGAAGEYAGLSVIRAYHESRGEGHRdiclipvsAHG---TNPASAVMAGLKVVPVKTHADGNL 672
                      788899999**************98877664799999998865554444333333344443344444...56788999**************** PP

                      -HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--S CS
  Beta_elim_lyase 110 dlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllan 203
                      dle+l+a+ k+   h++k ++ ++t       G  v    ++ + +i +++g ++ lDgA + na   l       + + D++ m l K   ++
       CDO72962.1 673 DLEDLKAKAKK---HKDKLAAFMITYPSTF--G--VFEHGVQDACKIIHDNGGQVYLDGANL-NAQIGLT---NPATCGGDVCHMNLHKTFAIP 755
                      ********999...7888888888887776..4..678899999999999999999999954.3332222...223345566666666655555 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.14   8.1e+02     151     174 ..     261     284 ..     252     317 .. 0.89
   2 !   19.2   0.1   7.7e-08   0.00046      90     207 ..     638     757 ..     616     790 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.14
                  TTTEB--HHHHHHHHHHTT-EEEE CS
  Aminotran_5 151 vtGtiqpveeigklakkkgalvlv 174
                  v G ++++  +++ +++ gal+++
   CDO72962.1 261 VNGAVKDFSGLAESVHATGALLVC 284
                  78*******************998 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 7.7e-08
                  EEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESB.ETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTTS. CS
  Aminotran_5  90 eivvteaehhanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithv.snvtGt.iqpveeigklakkkgalvlvDaaqavghi. 183
                   i +  +  h++  p+ +++   g+kv+ ++  ++g+ldl++l+++ + +k kl a++ +  ++ G+  + v++ +k+++++g  v +D+a    +i 
   CDO72962.1 638 DICLIPVSAHGTN-PASAVM--AGLKVVPVKTHADGNLDLEDLKAKAKkHKDKLAAFMITyPSTFGVfEHGVQDACKIIHDNGGQVYLDGANLNAQIg 732
                  5555555666666.788886..8********************8888546777777665415678997889********************9665551 PP

                  ---HHHHTESEEEEETTT.TTSSTT CS
  Aminotran_5 184 pidvkklgvDflafsghK.llgPtG 207
                    + +++g D+  +  hK +  P G
   CDO72962.1 733 LTNPATCGGDVCHMNLHKtFAIPHG 757
                  568999************7777865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 7146.16
//
Query:       CDO72963.1  [L=446]
Description: hypothetical protein BN946_scf185007.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-23   82.4   0.5      6e-21   75.2   0.1    2.7  2  DUF1741   Domain of unknown function (DUF1741)


Domain annotation for each model (and alignments):
>> DUF1741  Domain of unknown function (DUF1741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1     0.097   1.7e+03      59      86 ..     186     212 ..     170     229 .. 0.72
   2 !   75.2   0.1   3.4e-25     6e-21       2     175 ..     256     416 ..     255     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.097
     DUF1741  59 aLlslvrflttyasdlkskpqidtllds 86 
                 +Llsl ++l ++as+ +s  +  + ++ 
  CDO72963.1 186 TLLSLSSYLFSHASSSSSP-RAIAYANL 212
                 8999*****9999998884.44444444 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 3.4e-25
     DUF1741   2 vlaavilDllvdfinhnLrkrldvelytlalgillrllsylkrskvRLayhWselwraLlslvrflttyasdlkskpqidtlldslvnllalfisaGdt 100
                 ++++++lD ++  ++hnL ++l+v+              yl++      yhW+elw aL+ l++fl+++ ++l+++  +++l++++v ++ ++++  + 
  CDO72963.1 256 PPLCALLDCCILWLRHNLHRKLEVHC-------------YLRNMYDWVGYHWQELWLALILLLDFLASKLESLTTTGGVEQLVQETVLVIDFALCRCEG 341
                 67899999999999999999999875.............5566666789************************************************** PP

     DUF1741 101 fLpdpasYddLfYklvetgevltkfrdlyklalrasvtteseakesakkatnsidnlisvsthfkelleekkakk 175
                 +Lp+p++  +L Y++v++ ev+ k r l++   + ++ ++++ + +  +a ++++n+i+ ++ ++++l e   ++
  CDO72963.1 342 LLPNPQAVHELVYEVVRSAEVFRKQRGLLERLANPHSVSQKRLSGTVPRAPQALSNIIALAELYEAKLREAGVRS 416
                 ********************999999988877676678888899************************8765433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3198.72
//
Query:       CDO72964.1  [L=596]
Description: hypothetical protein BN946_scf185007.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    8.6   6.1         26    6.0   0.2    3.2  3  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.69   1.2e+04       3      10 ..      21      29 ..      20      30 .. 0.72
   2 ?    4.8   0.1    0.0036        65       5      24 .]     389     409 ..     381     409 .. 0.80
   3 ?    6.0   0.2    0.0014        26       6      23 ..     425     442 ..     419     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.69
   zf-C2H2_4  3 CpiC.gksF 10
                C++C ++ F
  CDO72964.1 21 CRLCqNEQF 29
                99**65555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0036
   zf-C2H2_4   5 iC.gksFsskkaLlrHlkthH 24 
                 +C  +sF s +aL  H++  H
  CDO72964.1 389 QCpAESFASTDALYEHILEKH 409
                 37778************9988 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0014
   zf-C2H2_4   6 CgksFsskkaLlrHlkth 23 
                 C++s  +k +++ H++th
  CDO72964.1 425 CQQSSVTKAQMRGHVLTH 442
                 *****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4653.35
//
Query:       CDO72965.1  [L=351]
Description: hypothetical protein BN946_scf185007.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-06   25.8   0.0    2.1e-05   24.3   0.0    1.8  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.095   12.6   0.0    2.0  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.4e-09   2.1e-05       7      45 ..      17      54 ..      16      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.4e-09
  F-box-like  7 EiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrl 45
                +iL ++F ++ ++s+L+r+a+VCr W+  a +t  L+r +
  CDO72965.1 17 DILHHVFGHVaDLSTLARAAAVCRGWAWPA-RT-ALYRDI 54
                7********99****************999.46.799976 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.095       8      33 ..      16      42 ..      10      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHTS-HHH.HHHHCTT-HHH CS
       F-box  8 sevlrhILerLplsd.llalrrVSkgw 33
                +++l+h++ ++   + l +++ V++gw
  CDO72965.1 16 EDILHHVFGHVADLStLARAAAVCRGW 42
                79*********99999*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2612.13
//
Query:       CDO72966.1  [L=563]
Description: hypothetical protein BN946_scf185007.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3835.37
//
Query:       CDO72967.1  [L=440]
Description: hypothetical protein BN946_scf185007.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-09   35.8  17.7    1.1e-08   34.9  17.7    1.5  1  TPT       Triose-phosphate Transporter family
  ------ inclusion threshold ------
      0.017   14.9   0.2      0.058   13.1   0.0    2.0  2  DUF5381   Family of unknown function (DUF5381)


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9  17.7   1.2e-12   1.1e-08       6     289 ..      97     389 ..      92     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.2e-12
         TPT   6 lfllWYllnvvfnilnKkilnvf.pyPltvsavqllvgsvlil.vlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKaseP 102
                 +++++ ++ +v+ ++nK ++     +Pl+  ++ql+  +vl+  +++++  +++pk++ +  k++ p++lv+++g v+  + l  v  Sf ++ + ++ 
  CDO72967.1  97 VVTFYMAAALVMVFVNKAVMISSpDLPLLFLLIQLTLAVVLLHgASMITTKVEIPKLELKPAKKLAPVTLVNVVGLVFNLLCLRGVDASFFQIARGLQL 195
                 455555667788899***9977758***********999887525666688899********************************************9 PP

         TPT 103 iFtvilsrlllgeklsllvylsLlpivgGval..a....svtElsFn..ligfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllP 193
                   t+i+s++  +  +s lv+ +  ++ +G  +  a    s+  l+ +   ++++  ++s l+ +++ ++ K  l +  + +a++l     + s+lll P
  CDO72967.1 196 PLTIIVSSMHGRSLPSRLVISAAAVVSTGFFIglApnsiSADRLHEApsRLSIVYGVLSSLFIAIHAVLIKFSLPHA-QNSAIQLAYWQNLGSALLLAP 293
                 99*******655555555555555555675541123222333333321145677889999***************94.57899999999999******* PP

         TPT 194 vallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 ++ll  ++ k  +l++s + + + +++ +++ gv+ +l  +     ++ +spvth  +++++ ++   l v +fk+ +++  a+   +  +G++ Y
  CDO72967.1 294 FILLQGELSKLAELTRSPTWNAEVFVWGSVVTGVFGFLLCVAGLLSIKITSPVTHMFSSAARSAIQTLLGVWLFKDLLTVNRAVSILIIAAGTVFY 389
                 *99999988888888888888999999******************************************************************999 PP

>> DUF5381  Family of unknown function (DUF5381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       0.3   2.7e+03      12      38 ..      90     119 ..      80     145 .. 0.49
   2 ?   13.1   0.0   6.5e-06     0.058       3      58 ..     340     395 ..     338     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.3
     DUF5381  12 rvllflatvgl..glaglfllf.eglkfes 38 
                 + + + + v +  + a +++++ +++ ++s
  CDO72967.1  90 HAWKVAGVVTFymAAALVMVFVnKAVMISS 119
                 444444433330033333333313455555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.5e-06
     DUF5381   3 ievksrkflrvllflatvglglaglfllfeglkfeskysllyiiigiigtifglii 58 
                 i++ s   + +     +++ +l g++l++  l+++   s+l i++g+++  ++ ++
  CDO72967.1 340 IKITSPVTHMFSSAARSAIQTLLGVWLFKDLLTVNRAVSILIIAAGTVFYTWVKSV 395
                 56666666777777889999*****************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3033.33
//
Query:       CDO72968.1  [L=458]
Description: hypothetical protein BN946_scf185007.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-10   40.1   0.0    5.4e-10   39.5   0.0    1.3  1  O-FucT    GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0     3e-14   5.4e-10     121     327 ..     227     431 ..      99     438 .. 0.62

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3e-14
      O-FucT 121 qklrCrskqgnpfglwdnfevsfe..........aelvlhdefgeeWkarv..................daLrFskeieelaaklvkrll..ekrkakg 189
                  + +C+       ++w+  + sf           a   l       ++ar                   ++L+++++ie++a+ +v++ +  + ++a  
  CDO72968.1 227 PHDMCS-------SFWALTRLSFPeerarsmgnpAPSPL-------HNARSdpdehmlcfdylyyayvlRYLHWTERIEDIAKYYVRQAFglPVSEADV 311
                 333333.......46666666666555555555533333.......2333333333344466666667799******************9997778999 PP

      O-FucT 190 gpylalHLRrekDflaaCehgggeeellaspresrreegkltpeecvpsleeialqlkgllkelkltsvfvAtdeiyggeelkelkkefpnlvkvtkek 288
                  py+a+H R + Df + C ++++ e+ +a +         ++ e+ v +++  +++ kg+  +  +t+v v +de+      +e  ++  +   v++e 
  CDO72968.1 312 PPYIAVHVRHG-DFANWCWQAEKPEDCFAPIP--------VI-ERRVREVQDELRERKGIDIP--MTHVIVTSDEKDPAW-WEEVFALGWR--TVDHEA 395
                 9**********.*********99999998776........44.45588999999******999..9********999777.6666655545..457787 PP

      O-FucT 289 laskeelekfkdgsva.aiDqiicsrsdvFigtyeStfsa 327
                  +++e         ++  iD +i s +  F+gt++St+s 
  CDO72968.1 396 AHTVEVF----GRWYPvLIDAAIQSAALGFVGTDRSTYSI 431
                 6666555....666666********************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3663.96
//
Query:       CDO72969.1  [L=538]
Description: hypothetical protein BN946_scf185007.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   13.6   0.2       0.32   11.5   0.0    2.1  2  YccV-like  Hemimethylated DNA-binding protein YccV like


Domain annotation for each model (and alignments):
>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.42   7.5e+03      17      51 ..     244     268 ..     229     282 .. 0.57
   2 ?   11.5   0.0   1.8e-05      0.32       2      29 ..     497     524 ..     496     534 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.42
   YccV-like  17 rGVivgwdeecaaseewiekigveelsegrnqpfY 51 
                 r+V vg+ e ++ +e w+++         +++p+Y
  CDO72969.1 244 RAVCVGVIEYME-DELWVNN---------EENPHY 268
                 444444443333.4444443.........334444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.8e-05
   YccV-like   2 kyrvGqvvrhkrygyrGVivgwdeecaa 29 
                 k+ vG+v+r  + g+ G ++gwd++++ 
  CDO72969.1 497 KFCVGDVLRCVHDGHLGLVLGWDKQIQV 524
                 8***********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3947.23
//
Query:       CDO72970.1  [L=598]
Description: hypothetical protein BN946_scf185007.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-06   26.7   0.0    6.3e-06   25.8   0.0    1.4  1  Transglut_core2  Transglutaminase-like superfamily
     0.0053   16.6   0.1      0.018   14.9   0.0    1.9  2  F-box-like       F-box-like


Domain annotation for each model (and alignments):
>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     7e-10   6.3e-06      24     152 ..     208     343 ..     142     345 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 7e-10
  Transglut_core2  24 aae.kleaLnellyeelgFagned..dyydprnslldqVLerrr..GiPislsvvylevArrlglplegvgfPghflvrvgespege..vliDP 110
                      +   +++a++++ ++  gFa ++   ++ +p n + ++ L   r   +P sl  v+  ++rrlgl +e+ + Pg + + + +++ ++  +l D 
       CDO72970.1 208 NLStVAKAVHQF-MRSEGFAVARSdqTFMNPLNQFPHRFLGAGRsaTLPMSLVWVFSGICRRLGLRAEPTNTPGTVFCHITSQDPQHgdILYDV 300
                      233144455555.6899998665433899***********987734678888888889*********************994433335699999 PP

  Transglut_core2 111 fnaGr..llskedleellraalgaeaeltreflapasnrdvltR 152
                      ++  r  +++++d+++++ +a+    + +r+ + pa+   +l+R
       CDO72970.1 301 CGTWRpvVFTSQDVQARIAEAGMS-SSYSRDAVFPADLAVILRR 343
                      986543268999999999888665.7888888888888887777 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     2e-06     0.018       1      46 [.       2      52 ..       2      54 .. 0.88
   2 ?   -1.9   0.0      0.35   3.1e+03      26      36 ..     299     309 ..     281     312 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-06
  F-box-like  1 isrLPdEiLlqIFsyLppsd......LlrlalVCrrWrrvaldtplLWrrlv 46
                +++LP E+ +qI++ Lp +       Ll+   V    r +ald+  +W +l+
  CDO72970.1  2 TPNLPVELYIQILHELPGRHpytfftLLSFLSVNHATRAAALDN-TVWEKLY 52
                589***********999885555666*****************9.****998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.35
  F-box-like  26 lVCrrWrrval 36 
                  VC  Wr v++
  CDO72970.1 299 DVCGTWRPVVF 309
                 58999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4657.67
//
Query:       CDO72971.1  [L=404]
Description: hypothetical protein BN946_scf185007.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-26   92.5   0.0      3e-26   92.1   0.0    1.2  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
    3.3e-21   75.5   0.0    1.9e-20   73.1   0.0    2.0  1  ApbA      Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   3.4e-30     3e-26       7     123 ..     258     394 ..     252     396 .. 0.84

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 3.4e-30
      ApbA_C   7 weKllinaainpltalldckngellespelralvrallkEalava......eaegvelseer......................leeaveavlektaan 77 
                  +Kl++n+ +np++all+cknge l+s +++ +++++++Ea +v+      ea        +                      l+ ++e+v+e t +n
  CDO72971.1 258 RSKLVVNSFVNPVSALLQCKNGETLRSTYGMTVADRVCREAERVFrlqwakEA--------QhlqqagevpnirpfprqllagpLRSEIERVVELTTPN 348
                 68*******************************************55554422........12223334455556666777777*************** PP

      ApbA_C  78 rsSMlqDveagrktEidyinGavvklAeklgvetPvnellyellka 123
                 +sSM+ D++ +r+tEid++nG+++ +++k+g    ++  l +l+k+
  CDO72971.1 349 YSSMYMDIKLRRPTEIDFLNGYIIDIGKKHGFRPLTHMSLAHLIKM 394
                 *******************************999999888888886 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   2.1e-24   1.9e-20       1     150 [.       3     187 ..       3     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 2.1e-24
                 EEEES-SHHHHHHHHHHHHHTHC...EEEE-SCHHHHHHHH...HCEEEEETTCEEEEEECEEECCH........................SCCCCS-E CS
        ApbA   1 iailGaGaiGsllaakLakagad...vtlilrsrrlealkk...nGlrltseggeeilrppealsae........................ekselepi 69 
                 i+++G+Ga+G ++a +L +  a+   v+ + rs+ ++ +++    G  + +++g+++ ++ ++  +                         +++ l++i
  CDO72971.1   3 IHVVGIGAVGNFVAFHLRRSLAPrhsVIALHRSETANIIRTlptGGTLFVERDGNVVSQDGVVHMTYgesrtrlrrsdfppismlapddarAREVLGHI 101
                 8****************663333345999999996665654221555555555777777777777779999********************999***** PP

                 SEEEE-SSGGGHHHHHHHHGGGECTCEEEEEESSSSCHHHHHTTTS.....TTSEEEEEEEE-EEEEEETTEEEECS--EEEEEES CS
        ApbA  70 dlvivtvKayqteealeeikplldpntvvlllqNGlgheeelreal.....pkprvlggvtthgatregpgevhhagkgeikigel 150
                 d ++vt+Ka+ +   + ++++ l ++++++ll+NG+g++e++ e +     ++p+ +++v thg++++gp +  h g g+i++g l
  CDO72971.1 102 DSLVVTTKAFAVPTIVYRLRRNLSRDSTIVLLHNGMGVYERIIEDVfpepsNRPNFVFCVNTHGVYSKGPLHTVHCGLGQIQLGIL 187
                 ***************************************99999999**99999****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2833.99
//
Query:       CDO72972.1  [L=318]
Description: hypothetical protein BN946_scf185007.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-44  150.4   0.0    9.1e-44  149.8   0.0    1.2  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   5.1e-48   9.1e-44       2     292 ..      17     298 ..      16     300 .. 0.93

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 5.1e-48
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHH.HHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseel.lGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrL 97 
                   +g+G+w      +++ke+ ++++  a+++G+++fD A  Yg+ +   + l++a+k+  +kre+v i++K+      ++ ++ ke+++e+++ sl   
    CDO72972.1  17 VGFGLW------KVTKETCADTVYNAIKEGYRLFDGASDYGNEKEAGEgLARAIKDGLVKREDVWITSKL------WNTYHAKEHVEEACKYSLVLW 101
                   578888......56689***********************8888877789999999**************......********************* PP

                   T-S-EEEEEE-S--TTS-........................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHH CS
  Aldo_ket_red  98 gtdyvDllllHrpdpslp.......................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllrele 171
                   g dy+Dl+l+H p +  +                          e++ a+e+lv++G++++iG+Sn +   +  +++ + +++ ++qve +++  l 
    CDO72972.1 102 GIDYFDLYLVHFPISLEYippsskfpqewwgldgkvhpvkvPFQETWTAMEKLVDSGLAKNIGLSNAQGSLILDVHRYARIEPQVLQVEIHPY--LT 196
                   *************9988899************************************************88888899*****************..** PP

                   HTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHH CS
  Aldo_ket_red 172 eegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnie 268
                   +e l+ +ck +++++ ays +g   + +   +++ +                  l+  + + ++a ++ +++aq+ lr+al  ++++ vip++ + e
    CDO72972.1 197 QEPLVNYCKLLNIAVTAYSSFGPQGYMELGGDKGAT-----------------SLLEHDVVTQIASKNQKTPAQVLLRWAL--QRGVAVIPKSNKHE 274
                   **********************76666454444444.................36999***********************..9************* PP

                   HHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 269 qlednldalelklseeevaeldel 292
                   +l +nl++  ++lse++++++  l
    CDO72972.1 275 RLVQNLAVTTFELSEQDMKTISGL 298
                   *******************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2249.78
//
Query:       CDO72973.1  [L=857]
Description: hypothetical protein BN946_scf185007.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-09   35.2   0.0    1.9e-08   34.1   0.0    1.5  1  PB1           PB1 domain
  ------ inclusion threshold ------
       0.21   11.6   0.2          2    8.5   0.1    2.1  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
        4.2    8.1  10.6        9.2    6.9   0.4    3.7  3  DUF883        Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   3.2e-12   1.9e-08      13      69 ..      17      72 ..       4      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.2e-12
                EEEEEEGSSS-HHHHHHHHHHHHTSTCCSEEEEEEETTSSEEEESSHHHHHHHHHHH CS
         PB1 13 rrelsvssnisfeeLrakvekrfklsdedvklkYpdedgdlVtitsDeDLeealeea 69
                rr + ++  +s+ eL ak+e+  ++++++v ++Y d+dgd+Vt++s+e+L++    a
  CDO72973.1 17 RR-VTFQDWPSWNELAAKIESLYNIPKQNVGVSYVDNDGDEVTLSSEEELQDLYRSA 72
                44.8888899*****************************************987776 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00033         2      95     114 ..     300     319 ..     290     346 .. 0.69
   2 ?    0.4   0.0       0.1   6.2e+02      32      65 ..     780     812 ..     774     823 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00033
  Baculo_PEP_C  95 tnLlssvtNinstLnnllqa 114
                   tn++++v+N+ stL+n+l++
    CDO72973.1 300 TNIANDVANLFSTLSNILAS 319
                   67777777777777777765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.1
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldtrl 65 
                    +a++ +++dai ++Ln++   l++  + l+t++
    CDO72973.1 780 NAAAMGRAVDAITKRLNDMGFTLTK-YPTLSTKI 812
                   46899999*********99988887.55555555 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.062   3.7e+02       2      55 ..     214     267 ..     213     277 .. 0.86
   2 ?    6.9   0.4    0.0015       9.2      23      64 ..     345     387 ..     304     397 .. 0.80
   3 ?    3.3   1.3     0.021   1.2e+02      24      63 ..     656     695 ..     647     705 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.062
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeava 55 
                 +l++++e+  ++   +++e++++   ++ ++++r ee+l+ +  + ++++ a+a
  CDO72973.1 214 DLNSDMETSSSNQSVVAEETGSKHSIHVYNVKSRSEENLTGVTRSRSRTTTALA 267
                 7899**********************************9988777777766665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
      DUF883  23 deageeaeelRerleerlerarerlrdaeeavaera.keaaea 64 
                 d+  + aee+R+ +  +++++r++++d+++ ++e a +++a+a
  CDO72973.1 345 DSVLRAAEEIRRSALVSADQMRQAAADTRRVAEEAAgRRVADA 387
                 4455678899999999999999999999998888762344444 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.021
      DUF883  24 eageeaeelRerleerlerarerlrdaeeavaerakeaae 63 
                 ++ e a+++ e++++   +a+er r+++e+ ++r+k+++ 
  CDO72973.1 656 DSTEAAKRALEEAKQGYLAAKERYRRMREERKKRMKNVST 695
                 6777788888888888888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1209  (0.0674327); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.35s 00:00:01.23 Elapsed: 00:00:00.52
# Mc/sec: 4947.48
//
Query:       CDO72974.1  [L=589]
Description: hypothetical protein BN946_scf185007.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-09   37.0   0.9    7.3e-09   35.4   0.9    2.0  1  F-box-like    F-box-like
  ------ inclusion threshold ------
       0.22   11.5   2.0        6.6    6.8   0.4    3.3  2  F-box-like_2  F-box-like domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.9   8.2e-13   7.3e-09       1      47 [.     103     158 ..     103     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 8.2e-13
  F-box-like   1 isrLPdEiLlqIFsy....Lppsd........LlrlalVCrrWrrvaldtplLWrrlvl 47 
                 i++LP EiL +IF+y        +         lrl+ VC+r+r+val ++ LW+ + +
  CDO72974.1 103 IRDLPSEILTTIFRYvvwsS---SgadqatqhRLRLTWVCKRFREVALADQTLWNSVWF 158
                 679**********9944330...144455555**********************99876 PP

>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.03   2.7e+02      27      45 ..      31      52 ..      30      75 .. 0.75
   2 ?    6.8   0.4   0.00073       6.6      20      38 ..     101     119 ..      88     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.03
  F-box-like_2 27 dellelifkgCkdpayep...l 45
                  del++  +k C+dp+ ep   l
    CDO72974.1 31 DELIRTYLKTCQDPKVEPdreL 52
                  8999999*********993332 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00073
  F-box-like_2  20 ltllDlPdellelifkgCk 38 
                   + + DlP e+l  if++  
    CDO72974.1 101 FPIRDLPSEILTTIFRYVV 119
                   5688999999999998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3871.98
//
Query:       CDO72975.1  [L=316]
Description: hypothetical protein BN946_scf185007.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-12   46.8   0.3    3.4e-12   46.0   0.3    1.4  1  Homeodomain  Homeodomain
    0.00079   19.3   0.1     0.0015   18.3   0.1    1.5  1  Homeobox_KN  Homeobox KN domain


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.3   3.8e-16   3.4e-12       3      57 .]      40      94 ..      39      94 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 3.8e-16
                 -SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Homeodomain  3 kRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57
                 +R ++ + q+ +L ++Fe + +ps+eer+ LA++lg+e + V  WFqN+R   kk
   CDO72975.1 40 TRKRLAPAQTSALVSVFEVKTHPSREERALLAAELGMELKAVNAWFQNKRRTLKK 94
                 69999*********************************************87776 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.7e-07    0.0015      11      39 ..      62      90 ..      59      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-07
  Homeobox_KN 11 PseedKeeLlkeTglsvkqitnWFINaRr 39
                 Ps+e+++ L++e g+  k ++ WF N Rr
   CDO72975.1 62 PSREERALLAAELGMELKAVNAWFQNKRR 90
                 ****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2299.69
//
Query:       CDO72976.1  [L=765]
Description: hypothetical protein BN946_scf185007.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   23.4   1.0    3.6e-05   22.4   1.0    1.4  1  DUF4962   Domain of unknown function (DUF4962)
     0.0018   18.1   0.0       0.97    9.2   0.0    2.5  2  DUF4448   Protein of unknown function (DUF4448)
  ------ inclusion threshold ------
       0.45   10.6   4.3       0.43   10.7   0.2    2.9  3  TPPK_C    Thiamine pyrophosphokinase C terminal


Domain annotation for each model (and alignments):
>> DUF4962  Domain of unknown function (DUF4962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.0   6.1e-09   3.6e-05     212     386 ..     201     391 ..     189     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.1e-09
     DUF4962 212 eanvealvraylLtkDkkyakeaikrllellswd...kskavkgDFnaatll......sllalaYDsfYdllseeekkllkkaikergkki.yeefvnr 300
                 +  ++a + ay +t+D+k+++ + + l + +       ++  ++ +n + +l       + a+aYD  Yd  s e++ ++++++k  g ++  + f+n 
  CDO72976.1 201 KMRIKAFAYAYRMTNDTKWLDRTYQELQNAAGNGttsFGPDGQDKWNPTHFLdtaeftAAFAIAYDWLYDAWSAEQRSSILTSMKFYGLEVgLNAFSNS 299
                 4579999****************9999998865432234556666666555511111167899*************************98857899999 PP

     DUF4962 301 lenhiadn..HvWqmtlRi.ltlaalavvgelpeA...dkWldyvYevWlaRfPgLnkDGgWHngdsYfkvnlrtlievpalysklsGvdfF 386
                      a+n    W       lt++alav+g+ +     +   + + +     + ++++DG+W ++  Y+   +  l e++a + + +G df 
  CDO72976.1 300 STGWWANNieGNWNCVCNSgLTMGALAVLGDDDSGlpeQILGKTIPNALENCIWAVSSDGTWAETANYWYFGTTGLAEMTASLLTAAGDDFG 391
                 99999988444799887644**********96553221344567788889999999*****************9999999999999999984 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0013       7.5     151     186 ..      15      50 ..       5      53 .. 0.84
   2 !    9.2   0.0   0.00016      0.97      98     166 ..     659     725 ..     612     733 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
     DUF4448 151 egkkaekyalaialPvvvvvlvlgligfvlwnrkkr 186
                   k+++ + l i++Pv+++v++++++g vl +r ++
  CDO72976.1  15 RPKTRNRKWLWIGIPVAIAVILAAVLGGVLGSRAHK 50 
                 5566778999*******************9999876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00016
     DUF4448  98 eewlkgkkservti.....vlvslqpdnvkdeveikkGpkVsltkkedlkkledkeseegkkaekyalaialPv 166
                   + ++++s ++ti      ++ ++p++    v++++Gp V+  + + l     +++ +++++   +++i+lP 
  CDO72976.1 659 ATVTTSGNSATLTIgdkklQMTVVSPTD---GVTLSTGPAVRFDDDPPL----PPNQVDQPNPGVTVVMITLPA 725
                 4444444444544455544888888887...7**************999....57788999999*********6 PP

>> TPPK_C  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   7.1e-05      0.43       6      34 ..      11      39 ..       9      42 .. 0.88
   2 ?   -1.9   0.1      0.59   3.5e+03      39      49 ..     263     273 ..     258     274 .. 0.79
   3 ?   -0.6   0.0      0.24   1.4e+03      27      44 ..     716     733 ..     715     741 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.1e-05
      TPPK_C  6 LYrsrisggallllvlAaLvAvavallvs 34
                L +sr +++   +l++++ vA+av+l+++
  CDO72976.1 11 LTTSRPKTRNRKWLWIGIPVAIAVILAAV 39
                778999999999**************975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.59
      TPPK_C  39 sfldllidtwn 49 
                   +d+l+d w+
  CDO72976.1 263 IAYDWLYDAWS 273
                 5789******7 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.24
      TPPK_C  27 vavallvspagqsfldll 44 
                 v v++   pagq  l++l
  CDO72976.1 716 VTVVMITLPAGQYSLQVL 733
                 789999999***555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5117.04
//
Query:       CDO72977.1  [L=289]
Description: hypothetical protein BN946_scf185007.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-07   29.2   0.3    1.2e-06   28.2   0.3    1.5  1  Homeodomain  Homeodomain
  ------ inclusion threshold ------
          9    4.6   7.7        4.5    5.6   5.8    1.5  1  Rrn6         RNA polymerase I-specific transcription-initiati


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.3   1.4e-10   1.2e-06       1      40 [.      61     100 ..      61     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.4e-10
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS- CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLe 40 
                  +r+R+ +t+ ql++Le+l++ + +ps++++e LA+++g++
   CDO72977.1  61 KRSRHKMTDLQLQRLEELYQADTHPSRAAKEALAAEIGIQ 100
                  79**********************************9985 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.8    0.0005       4.5     632     698 ..      82     159 ..      69     261 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0005
        Rrn6 632 rdipsrvrlakerlirevaaelllSsirvsk......lraeasslssslssss...ssssssssssssedpelsr...........e 698
                 + +ps  r+ake l++e+ ++lllS  r ++      +       +++++++    ++s sss +s s d ++++            
  CDO72977.1  82 DTHPS--RAAKEALAAEIGIQLLLSECRPVVsldsahV-------RQTSGETPariARSPSSSLESVSSDDAATPhalwkfiisspP 159
                 34455..555******************7773343331.......222222223453333333333332222222233344444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 1821.23
//
Query:       CDO72978.1  [L=935]
Description: hypothetical protein BN946_scf185007.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-20   72.2   6.8     0.0065   17.3   0.0    7.9  8  WD40         WD domain, G-beta repeat
    2.3e-08   34.2   0.0      0.085   13.2   0.0    5.3  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   1.4e+04      18      36 ..      87     104 ..      79     104 .. 0.84
   2 !   15.0   0.0   3.9e-06     0.035      11      38 .]     133     162 ..     120     162 .. 0.84
   3 !    6.1   0.0    0.0025        22      14      28 ..     249     265 ..     242     274 .. 0.80
   4 !   13.8   0.0   9.4e-06     0.084      13      37 ..     289     313 ..     279     313 .. 0.91
   5 !   17.3   0.0   7.2e-07    0.0065       6      37 ..     337     367 ..     331     368 .. 0.82
   6 ?   -0.6   0.0      0.34     3e+03      13      27 ..     481     495 ..     474     506 .. 0.80
   7 !    7.8   0.0   0.00071       6.3      10      37 ..     533     567 ..     526     568 .. 0.70
   8 !    6.6   0.1    0.0017        15      13      38 .]     595     620 ..     587     620 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                 EETTSSEEEEEETTSEEEE CS
        WD40  18 fspdgawlasGsdDgtvri 36 
                 f +dg++++s+   ++v+i
  CDO72978.1  87 FTKDGSYFFSAA-GPSVKI 104
                 778999*99888.888887 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.9e-06
                 SS.EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  11 ss.vtslafspdgaw.lasGsdDgtvriWd 38 
                 s+ vts   +p++a+ l++Gs Dg +r+Wd
  CDO72978.1 133 SDvVTSAILNPHNAFqLITGSLDGYIRVWD 162
                 345699999999999999***********9 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0025
                 EEEEEETTSSEEE..EE CS
        WD40  14 tslafspdgawla..sG 28 
                 t+la sp+gawl+  +G
  CDO72978.1 249 TGLAISPSGAWLVatAG 265
                 799********973234 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 9.4e-06
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                  t+laf+p+  ++a+G+  g +r+W
  CDO72978.1 289 LTCLAFHPSEEYFATGDATGCIRLW 313
                 69**************99******* PP

  == domain 5  score: 17.3 bits;  conditional E-value: 7.2e-07
                 EEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGHssvtslafspdgawlasGsdDgtvriW 37 
                 ++ +H  v+slaf p+ga+l+sG++   + iW
  CDO72978.1 337 HWHAH-AVSSLAFTPNGAYLLSGGEEAVLVIW 367
                 44455.7*****************99999999 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.34
                 EEEEEEETTSSEEEE CS
        WD40  13 vtslafspdgawlas 27 
                 v  +  s++g+w+a+
  CDO72978.1 481 VERVVLSDSGDWMAT 495
                 7778899*****986 PP

  == domain 7  score: 7.8 bits;  conditional E-value: 0.00071
                 S..SSEEEEEEETTSSE.....EE.EEETTSEEEEE CS
        WD40  10 H..ssvtslafspdgaw.....la.sGsdDgtvriW 37 
                 H  ++vt +af p  +      la +G+ Dg +r W
  CDO72978.1 533 HglKNVTRVAFRPRARTpddllLAtTGG-DGQIRTW 567
                 7667799999555555555554764788.*****99 PP

  == domain 8  score: 6.6 bits;  conditional E-value: 0.0017
                 E.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 v.tslafspdgawlasGsdDgtvriWd 38 
                 + ++l++spdg++la  s   +v i+d
  CDO72978.1 595 IpSDLSWSPDGSLLAV-SVGSHVAIYD 620
                 55799********985.4466666665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.33     3e+03      59      78 ..      99     118 ..      63     138 .. 0.80
   2 ?   -0.4   0.0      0.16   1.5e+03      53      81 ..     149     177 ..     126     184 .. 0.81
   3 !    9.0   0.0   0.00019       1.7      36      90 ..     284     339 ..     258     341 .. 0.79
   4 !    4.1   0.0    0.0065        58      39      71 ..     341     373 ..     339     386 .. 0.90
   5 ?   -0.2   0.0      0.14   1.3e+03      38      69 ..     535     571 ..     491     578 .. 0.71
   6 !   13.2   0.0   9.5e-06     0.085      37      85 ..     592     639 ..     549     645 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.33
  ANAPC4_WD40  59 dgevrlldaesgkvvhslsv 78 
                    +v+++ + +g+vv++l+ 
   CDO72978.1  99 GPSVKIHAVATGEVVSTLTP 118
                  4479999********99876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.16
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhslsvkse 81 
                  L  +  dg +r+ d  +g +++++++++ 
   CDO72978.1 149 LITGSLDGYIRVWDFLDGSLLQTIRIAQP 177
                  778889***************99998876 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00019
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls.vksekavtclgWg 90 
                   + ++ ++La++p+++ +a + + g +rl    ++ v  + + v+++ + t+l+W 
   CDO72978.1 284 VSPERLTCLAFHPSEEYFATGDATGCIRLWYCLNESVAVKTPgVEKTAQTTTLHWH 339
                  5567889**********************99999988766652677779999***7 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.0065
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  + v+sLa+ p+g  L  + ++  + + + ++gk
   CDO72978.1 341 HAVSSLAFTPNGAYLLSGGEEAVLVIWQLHTGK 373
                  5799*******************9999999997 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.14
  ANAPC4_WD40  38 dsevrsLaWk.....pdgklLavaysdgevrlldaes 69 
                   ++v+ +a++     pd+ lLa    dg++r   + s
   CDO72978.1 535 LKNVTRVAFRprartPDDLLLATTGGDGQIRTWRIRS 571
                  5566666666222225788999999999998776655 PP

  == domain 6  score: 13.2 bits;  conditional E-value: 9.5e-06
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +d+  ++L+W+pdg+lLav++  ++v ++d e+  + + l++ +  +v+
   CDO72978.1 592 RDEIPSDLSWSPDGSLLAVSVG-SHVAIYDPETNALFQVLTAPECPTVS 639
                  4444568************997.69*******99999888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5902.12
//
Query:       CDO72979.1  [L=837]
Description: hypothetical protein BN946_scf185007.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-06   26.1   7.0    1.3e-05   25.2   7.0    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.043   12.8   0.0      0.081   11.9   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   7.0   1.4e-09   1.3e-05       5      38 ..      30      63 ..      29      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.4e-09
                HHHHCT---ST.SSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  5 nCrkkKvKCda.kkPaCsnCkklnleCtfysessk 38
                 Crk+K +C++ ++P C++C+  +leC  ++++++
  CDO72979.1 30 ACRKQKMRCEGaENPPCRRCRHAGLECL-FEKPTR 63
                7***********9999***********9.777665 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     9e-06     0.081     153     180 ..     468     495 ..     456     520 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9e-06
  Fungal_trans 153 rRlwwaaFylDktialklGrppllddsq 180
                    R+w++ + ++ + +  +Grp +l+d++
    CDO72979.1 468 SRTWFCLYLFEHQMSYGTGRPAILKDDE 495
                   59********************887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5808.25
//
Query:       CDO72980.1  [L=729]
Description: hypothetical protein BN946_scf185007.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0011   17.9  20.5     0.0011   17.9  20.5    2.2  2  DUF812           Protein of unknown function (DUF812)
  ------ inclusion threshold ------
       0.01   15.7  15.4       0.01   15.7  15.4    2.7  3  BBP1_C           Spindle pole body component BBP1, C-terminal
       0.99    9.1  29.3       0.89    9.2  17.4    2.9  3  SHE3             SWI5-dependent HO expression protein 3
          1    9.0  10.7       0.17   11.6   6.3    1.9  2  DUF4239          Protein of unknown function (DUF4239)
        1.2    9.1   8.3        5.2    7.1   3.4    2.6  2  DUF1515          Protein of unknown function (DUF1515)
        1.5    8.9  17.1        5.2    7.1   6.9    2.5  2  DUF1664          Protein of unknown function (DUF1664)
        1.7    8.6   7.9        2.7    8.0   5.1    2.3  2  DUF3439          Domain of unknown function (DUF3439)
        6.3    6.8  43.5       0.48   10.5  30.5    3.5  4  UPF0242          Uncharacterised protein family (UPF0242) N-t
        8.9    6.3   7.8         27    4.8   7.8    1.8  1  UPF0542          Uncharacterised protein family UPF0542


Domain annotation for each model (and alignments):
>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   5.5     0.079   1.6e+02     212     308 ..      79     173 ..       9     248 .. 0.60
   2 !   17.9  20.5   5.7e-07    0.0011     299     476 ..     491     667 ..     352     679 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.079
      DUF812 212 enaaelaaeqeweeeaneqglasr..lteeeykkrkkeklqkrlaeqlrkaalkseeaessasksksdlaellsefseksetdslktkgsrfthaeklq 308
                  ++++ a+++e+e+  ++++++s    ++++  ++ ++   +r +++l+k+   s+ +++ +s++ s+ + + s+++ +++   + +k+sr++h   ++
  CDO72980.1  79 WKKKKAAKKEEAEKRRKSKARSSIasSSKNKRSASTSTAATTRQTRRLTKQTAPST-STRPTSRADSPPQPSSSRVTLQDS---KPHKRSRIAHDSPTE 173
                 33334444444444444444422211122222223355555555555555544433.334555666666666666633333...334666666666653 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 5.7e-07
      DUF812 299 srfthaeklqftkeela.kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlell.pdae 395
                 s+ + + ++ + +e l+ ++++   e+  + ++ +    +q + l++ +ee e+++++le +i+ ++ +l++ k+e++e+++  + + k l+   ++  
  CDO72980.1 491 SEADISPEIPLMEE-LPpTSTTARAEVDSQSQQVVP--DSQTQGLSAMLEEKEQQLNQLELQIEDLQVQLKAAKTETSEKAARFEAQLKSLQDGsDEKS 586
                 33333333333333.333455555555555555433..6788899999999999999999999999999999999999999999999888776647788 PP

      DUF812 396 eniekLqalveasaqrlvelakqWekhRvplieeyrelkesksekekeaerkleeikklrekmkevaeelrqkeellkqLv 476
                 e+i++L++ +++ + ++ ++ ++ e++R+   +e  el+e+ +e+++++++  + + +l++++  +aee  +  ++++q  
  CDO72980.1 587 EQISQLESQLVELQLQVTQVTSEQEQQRELHEAEVHELREALEERTEQISQLESALVELHTEISALAEENEKLTQAQQQSA 667
                 999999999999999999999999999999999999999999999999999999999999999999999888888777754 PP

>> BBP1_C  Spindle pole body component BBP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.2       1.8   3.5e+03     152     171 ..      92     111 ..      73     134 .. 0.40
   2 ?    2.2   1.5     0.068   1.4e+02     127     157 ..     537     567 ..     513     577 .. 0.67
   3 ?   15.7  15.4   5.2e-06      0.01      75     186 ..     556     669 ..     554     677 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
      BBP1_C 152 neikdtssssnafstseyrk 171
                 +++k +  ss a+s ++ r+
  CDO72980.1  92 KRRKSKARSSIASSSKNKRS 111
                 11112222222222222121 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.068
      BBP1_C 127 ekreidkikYesrikdLerqllereneikdt 157
                 e++e++  + e +i+dL+ ql++ ++e +++
  CDO72980.1 537 EEKEQQLNQLELQIEDLQVQLKAAKTETSEK 567
                 3566666777888888888888777664433 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 5.2e-06
      BBP1_C  75 eLkkiskesldlqskianlekqlvdqaiekdreikkleeklldlelrnkeleekreidkikYesrikdLerqllereneik.........dtssssnaf 164
                 +Lk+  +e+ +  ++ +   k+l d + ek  +i++le++l++l+l+ +++++++e+++   e+++++L + l+er+++i+         +        
  CDO72980.1 556 QLKAAKTETSEKAARFEAQLKSLQDGSDEKSEQISQLESQLVELQLQVTQVTSEQEQQRELHEAEVHELREALEERTEQISqlesalvelH-------T 647
                 6888889999999999999999999*******************************************************95533333332.......3 PP

      BBP1_C 165 stseyrkkeelsskdenqsldt 186
                 + s   +++e+ ++ ++qs d+
  CDO72980.1 648 EISALAEENEKLTQAQQQSADK 669
                 3333333344444444455544 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3   4.5e+03     212     225 ..      69      82 ..      25     116 .. 0.71
   2 ?    9.2  17.4   0.00045      0.89      56     150 ..     531     635 ..     527     644 .. 0.68
   3 ?    6.9   1.5    0.0023       4.6       7      34 ..     644     671 ..     640     681 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
                 XXXXXXXXXXXXXX CS
        SHE3 212 ykelkelileyaek 225
                 +  + +li e+++k
  CDO72980.1  69 HDCTDDLIHEWKKK 82 
                 55555555554444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00045
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHCCCHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  56 nLsslLkRKerrlkdlekelselkesveelklek....kqlkkrlenssaset.......eleeelerlkvqYdalvdsqkeYkehYqqeieeLkesle 143
                  Ls++L+ Ke++l +le ++++l+ +   +k+e+      ++ +l+++++ +        +le +l +l+ q   +   q++ +e  + e+ eL+e+le
  CDO72980.1 531 GLSAMLEEKEQQLNQLELQIEDLQVQLKAAKTETsekaARFEAQLKSLQDGSDekseqisQLESQLVELQLQVTQVTSEQEQQRELHEAEVHELREALE 629
                 59******************999877765554431111445666666665555000001145555556677778888889999***************9 PP

                 HHHHHHH CS
        SHE3 144 klklene 150
                 + + e+ 
  CDO72980.1 630 ERT-EQI 635
                 844.444 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3   7 sLHeqiDaLtktnlqLtqqsqeLlekle 34 
                  LH++i aL+++n +Ltq +q+  +k+ 
  CDO72980.1 644 ELHTEISALAEENEKLTQAQQQSADKHT 671
                 59*******************9999985 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       5.8   1.2e+04      55      77 ..     112     134 ..      98     143 .. 0.68
   2 ?   11.6   6.3   8.8e-05      0.17      86     145 ..     589     649 ..     532     655 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 5.8
     DUF4239  55 rkeakaliadyvktivseerslv 77 
                 + + +a ++ +++++ +++ ++ 
  CDO72980.1 112 ASTSTAATTRQTRRLTKQTAPST 134
                 66777777788888877777766 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.8e-05
     DUF4239  86 lk.asseltkLldllaevkgdassesaaveellseiaqltelRakRisdeavalppthflv 145
                 +   +s+l +L  ++ +v+ ++ ++ +++e+  +e+ ++ e R + is++++al ++h  +
  CDO72980.1 589 ISqLESQLVELQLQVTQVTSEQEQQRELHEAEVHELREALEERTEQISQLESALVELHTEI 649
                 3347899999999********************************************9764 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.4    0.0026       5.2       7      67 ..     540     607 ..     535     616 .. 0.77
   2 ?    3.6   0.4     0.034        67      37      70 ..     623     656 ..     609     665 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0026
     DUF1515   7 lqqlgtllaevkelredlk.....rsed..rsdasrakmyrkmdelvervtalegsvvklkaditsvk 67 
                  qql++l  ++++l+ +lk      se+  r +a+  +++   de  e+++ le+ +v+l+  +t+v 
  CDO72980.1 540 EQQLNQLELQIEDLQVQLKaakteTSEKaaRFEAQLKSLQDGSDEKSEQISQLESQLVELQLQVTQVT 607
                 5888999999999999998886653433114456667788899******************9999875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.034
     DUF1515  37 kmyrkmdelvervtalegsvvklkaditsvkevt 70 
                 ++ + ++e  e+++ le+++v+l+++i+++ e  
  CDO72980.1 623 ELREALEERTEQISQLESALVELHTEISALAEEN 656
                 3444566777777888888888888887776654 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.9    0.0026       5.2      42     107 ..     542     607 ..     537     612 .. 0.91
   2 ?    6.3   6.1    0.0048       9.6      49     112 ..     602     665 ..     598     674 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0026
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                  ++++  q+e+++ +l+a+k + s++ +r +++l++ ++ s e +e++++++++l e++ +v++v 
  CDO72980.1 542 QLNQLELQIEDLQVQLKAAKTETSEKAARFEAQLKSLQDGSDEKSEQISQLESQLVELQLQVTQVT 607
                 56788899*************************************************999999986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0048
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 q++qv ++ +++++  +++++++ + l+e +e ++++++ + e++ ++s++ e+ e++ +a ++
  CDO72980.1 602 QVTQVTSEQEQQRELHEAEVHELREALEERTEQISQLESALVELHTEISALAEENEKLTQAQQQ 665
                 6778888877777777789999999999999999999999999999999999999999887665 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.1    0.0014       2.7       7      68 ..      75     140 ..      70     146 .. 0.68
   2 ?    0.4   0.0       0.3   5.9e+02      21      51 ..     668     699 ..     647     713 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0014
     DUF3439   7 ylsrwikknskivkakssa.vdpdsakcsgsgkpvrsiicptttttttt...ttttmpttttlptt 68 
                  + +w kk++++ +++++   ++  +  + s k  rs    t++tt  t   t  t p+t+t pt+
  CDO72980.1  75 LIHEWKKKKAAKKEEAEKRrKSKARSSIASSSKNKRSASTSTAATTRQTrrlTKQTAPSTSTRPTS 140
                 57789988887775544432344444556788999998888777765553337789999*999997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.3
     DUF3439  21 akssavdpdsakcsgsgkpvrsi.icpttttt 51 
                 +k++   + + +c+ sg p r + +c     t
  CDO72980.1 668 DKHTEKLAAAEQCAASGPPERILyVCQHVHGT 699
                 222223345568*******9986356544433 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.95   1.9e+03      96     119 ..      81     109 ..      45     136 .. 0.51
   2 ?    4.7  16.6     0.014        28      95     174 ..     526     605 ..     474     609 .. 0.72
   3 ?   10.5  30.5   0.00024      0.48      69     189 ..     535     652 ..     526     656 .. 0.69
   4 ?    7.9  17.5    0.0015       3.1      66     143 ..     605     679 ..     597     683 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.95
     UPF0242  96 eeeeeLkee.....ldakeeelerlkeen 119
                 +++   kee      ++  + ++   +++
  CDO72980.1  81 KKKAAKKEEaekrrKSKARSSIASSSKNK 109
                 22222222211111222222222223333 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.014
     UPF0242  95 qeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieq 174
                  ++++ L   l++ke++l++l+ + + Lq++l+a++ + +e     e+qL+  q   +e  e+i+++ s l + q q+ q
  CDO72980.1 526 DSQTQGLSAMLEEKEQQLNQLELQIEDLQVQLKAAKTETSEKAARFEAQLKSLQDGSDEKSEQISQLESQLVELQLQVTQ 605
                 34566788889999999999999999999999999999999999999999999999999999999999988887777766 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00024
     UPF0242  69 kleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlek 167
                 +leeke++l +l+ +++  + +l+ ++ e+ e + +++a+ + l+    e+    e+ ++   +  el+l++ +   e++++ +  +++++e+r+ le+
  CDO72980.1 535 MLEEKEQQLNQLELQIEDLQVQLKAAKTETSEKAARFEAQLKSLQDGSDEKS---EQISQLESQLVELQLQVTQVTSEQEQQRELHEAEVHELREALEE 630
                 3444444444444444444444444444444444444444444444444444...444444449999******************************** PP

     UPF0242 168 rqdqieqLeskVrDlnyEiktL 189
                 r +qi+qLes    l  Ei  L
  CDO72980.1 631 RTEQISQLESALVELHTEISAL 652
                 ******************9877 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0015
     UPF0242  66 ekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeq 143
                 +    +e+++ l e +  +++ +ealee++e+  +L+  l + ++e+  l een++L  ++++ ++d +  kl++ eq
  CDO72980.1 605 QVTSEQEQQRELHEAE--VHELREALEERTEQISQLESALVELHTEISALAEENEKLT-QAQQQSADKHTEKLAAAEQ 679
                 4555667777777777..8999999999999999999999999999999999999999.6666677777777766665 PP

>> UPF0542  Uncharacterised protein family UPF0542
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.8     0.014        27      43      71 ..      79     107 ..      75     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
     UPF0542  43 yKLakelkkqekekklkakrkaniaksrk 71 
                 +K +k+ kk+e+ek++k+k + +ia+s k
  CDO72980.1  79 WKKKKAAKKEEAEKRRKSKARSSIASSSK 107
                 9************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2963  (0.165263); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                       206  (0.0114898); expected 17.9 (0.001)
Passed Fwd filter:                        99  (0.00552178); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.65u 0.43s 00:00:02.08 Elapsed: 00:00:00.65
# Mc/sec: 3399.62
//
Query:       CDO72981.1  [L=740]
Description: hypothetical protein BN946_scf185007.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-119  400.8  15.4   7.3e-100  335.4   0.4    3.0  3  Sec3_C    Exocyst complex component Sec3


Domain annotation for each model (and alignments):
>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   1.6   3.7e-14   6.6e-10       3      62 ..     122     181 ..     120     182 .. 0.96
   2 !   38.2   1.4   3.4e-14   6.1e-10      96     180 ..     181     256 ..     178     259 .. 0.92
   3 !  335.4   0.4  4.1e-104  7.3e-100     233     699 ..     258     716 ..     256     717 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.7e-14
      Sec3_C   3 adeleerLsreLskleaanikrllesdkkveelkkdidkalkecdeldalltlysveLst 62 
                 a+++e+rL +eL +l++ani++++esd++v ++ k++d+a++e+d+++++ ++y+  L++
  CDO72981.1 122 AEQIEARLLDELMALDKANIHSFIESDDRVLTVLKYLDDAINELDTMESVVSSYKIHLNQ 181
                 899*****************************************************9985 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 3.4e-14
      Sec3_C  96 stvslsesdleaLkeaelssanglealeealeaLfkAltaIdsdlkdlesdlgemravkerrerYekvsssFlrrlveflekkfk 180
                 +tv++++++l aL++++l+++  +++le+++ +L+kAl a        +   ++m+a  er ++Y+k++ +F++r+++fl+  f 
  CDO72981.1 181 QTVQVDSDALLALTQESLEQPASIRKLEASATELYKALLA------GRD---RDMAATMERLDEYRKYNAQFCKRMLDFLSIMFT 256
                 79**************************************......555...467**************************9995 PP

  == domain 3  score: 335.4 bits;  conditional E-value: 4.1e-104
      Sec3_C 233 qqYnasiskvYereikeffeslkkslkkssgseeseslssssseekkteglalrksrkltlkssktganlsekaaqkktsgrlkpdeafaevLdelepl 331
                 q+Y +++s++++ +ik +++++ + +kk+  +e +   +s s+++++t++ a    r  t  +s   ++     +   ++g+l+  ea+++vL++l   
  CDO72981.1 258 QAYFSAVSELHAVQIKALLSAYAALVKKAPAEE-ETDGFSGSTPTSNTSKAAQGMRRAGTIVRSPLESR---REKRDVNDGELRAAEALSMVLEQLAGT 352
                 78*************************777776.55555555677777777777777777766666633...45557789******************* PP

      Sec3_C 332 ilveQnFiidfFhlssletldfnefvkqsapserrakdlsrsknvesdrelarkveklmeaifqflekelvnlvekvlkvdplqalgilvyleqkikel 430
                 i  e++ i+ f+++++    +f++ +  +++++r+a + + +++++     ++ v+ +m+ if+fl  el ++ +++++ d++q +g+l+ le+   ++
  CDO72981.1 353 IYAEEEWISHFLQIDDA-AKTFADHMGLENYFRRQAARWVGLSQAT-----TKLVRGAMDLIFGFLPMELKAWLDNAMARDSVQVVGMLASLERFQSDA 445
                 ****************7.******************9999999998.....9*********************************************** PP

      Sec3_C 431 eesnqsflssvlqkllekvkslfkkfvdeqvesieetkvkvkkrkgvlpfvrnfpefvkavEsmlssaeralavrtlvdqaYeklieavfelLkreake 529
                 ee  + f++s+l+k + ++k lf++ v++ ++sieetk++ kkrkgv pf++ fp+++++vEs+l  +++ l++r+ +d aY+k+++a+f+ Lk+ ak+
  CDO72981.1 446 EERGNAFFLSLLEKQHMRLKALFERRVSDHIKSIEETKLTSKKRKGVAPFIKYFPTYISRVESQLIGSDT-LDIRQSIDAAYDKIVQAMFDALKQMAKM 543
                 **9999****************************************************************.**************************66 PP

      Sec3_C 530 ekaksvadeeedkeklnrhvllleNmnhfleeLselknsevleelrdeakqlfdeelelYvdavlrrplgkLieFvegveellqtkkaaeissqaaySk 628
                   +       edk +ln+hv+++eNm++f+ e+s++++ + + +++++a+++++e+l++Yv+ vlrrp++k+ieF+egve+ll+t+ ++ei+s ++yS+
  CDO72981.1 544 DGEG------EDKGQLNYHVIIIENMHYFVAEISQIEI-GSVAAFLKRAEAIYEENLNAYVKIVLRRPFAKIIEFFEGVERLLKTTAPSEIASNSSYSR 635
                 6555......****************************.************************************************************ PP

      Sec3_C 629 qalkkilskYtakeirkgieklykrvekhfledadra..........vleeeLlqkvwseleeefiskylrlekiiqkvYd 699
                 +alkk++++Ytak++rk i++l krvekhf e +++a           +  +++  vw+++eee ++  + ++k ++++Y+
  CDO72981.1 636 SALKKVVKEYTAKDVRKHIDALFKRVEKHFTEASEKAtteeasastgIAPGTVMVGVWKACEEELLRITELFNKRLSQCYK 716
                 ******************************9999999********98777788888************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 4735.84
//
Query:       CDO72982.1  [L=445]
Description: Glycosyltransferase Family 21 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-26   92.3   3.2    1.7e-20   73.2   0.1    2.9  3  Glyco_transf_21  Glycosyl transferase family 21
      6e-15   55.8   0.0    7.7e-15   55.4   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.2e-07   30.8   0.0    4.6e-07   29.8   0.0    1.5  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.99   5.9e+03      27      41 ..      68      82 ..      60      95 .. 0.69
   2 !   73.2   0.1   2.8e-24   1.7e-20       1     118 [.      97     229 ..      97     234 .. 0.80
   3 !   18.7   0.1   1.5e-07   0.00091     118     173 .]     248     302 ..     245     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.99
  Glyco_transf_21 27 eaakydllvisDsdv 41
                     e+a+y+l+   D+d 
       CDO72982.1 68 EYANYELFFCVDDDE 82
                     349999999999985 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 2.8e-24
  Glyco_transf_21   1 Psvr..rllvsgdpvgvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaaledp.........kvglVtslpv.gsdakglaaaleaa 82 
                      P+v+  + + +g  vgvnpKvnnl++a++++ +d+++++Ds+v+v+p +L++ +  l  p         ++g+V+++p+  + +++l++++e a
       CDO72982.1  97 PHVKahVAIRNGVTVGVNPKVNNLMTAYRQVAHDIIWVLDSNVMVDPGTLARSVDILNPPpnsprspsrRIGVVHHVPYaWVTKHTLGSRIEEA 190
                      566642233447799************************************98776653222233333389*****9995677889******** PP

  Glyco_transf_21  83 fl.ntlagvlqa..klsglgfavGksmalrreaLeaiGG 118
                      fl + +a+++ a  +++  +++vGks+++r+++Le++ G
       CDO72982.1 191 FLnTNHAKMYIAinTVAIESCVVGKSCLYRKSDLERVNG 229
                      **446788888895566779***************9976 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.5e-07
  Glyco_transf_21 118 GfealadeLAeDyalgkllraa.GlkvvlspapiaqtsvprrsslrallaRqlrWar 173
                      G++a+++ LAeD +++ +l  + Gl+  ls ++ a+++v++  sl ++ aR +rW r
       CDO72982.1 248 GLAAFGRFLAEDNMIASALWHElGLRHDLSCDV-AKNAVGN-MSLMDYIARRIRWVR 302
                      99**************8887666*********6.7778885.799**********75 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.3e-18   7.7e-15      16     229 ..      56     302 ..      42     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.3e-18
  Glyco_tranf_2_3  16 vlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnl.gstgksralnealravksdlvllvDdDtvvePdtlkrl 108
                       l e les+ +qey ++e++++vd +++  l v++ l a++p+v+ +v+++     g++ k+++l  a+r+v++d+++++D+ + v+P+tl+r+
       CDO72982.1  56 NLYENLESTFTQEYANYELFFCVDDDEDQSLTVVRDLMAKYPHVKAHVAIRNGVTvGVNPKVNNLMTAYRQVAHDIIWVLDSNVMVDPGTLARS 149
                      56678999***************9988888*******************9987667************************************** PP

  Glyco_tranf_2_3 109 lqff....ltp.....kvgavg.tpvfllnrstlvsalgalefaerhlrflaarralgv.ltlnGsgslirrevlkele............... 176
                      + ++    ++p     ++g+v  +p  +    tl s+    +++ +h+++  a +++ +  ++ G  +l+r + l++                 
       CDO72982.1 150 VDILnpppNSPrspsrRIGVVHhVPYAWVTKHTLGSRIEEAFLNTNHAKMYIAINTVAIeSCVVGKSCLYRKSDLERVNgslkpipdadaggfq 243
                      ****766644488788888888555566688899************************98*******************9***********999 PP

  Glyco_tranf_2_3 177 ....gldp.lflltdDyelglrlrr.agfrtayvpgaavrevfpsslkayikqrnRwvy 229
                          gl + +  l++D+ ++  l+   g r +   ++a + v   sl +yi +r Rwv+
       CDO72982.1 244 pgarGLAAfGRFLAEDNMIASALWHeLGLRHDLSCDVAKNAVGNMSLMDYIARRIRWVR 302
                      99986666788999999999999988999999999999999999999999999999985 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   7.7e-11   4.6e-07      12     133 ..      56     191 ..      54     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 7.7e-11
                      THHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-H.......HHHHHHHHHHH--SSEEEEEESSEEE-TTHHH CS
  Glycos_transf_2  12 tlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvG.......kagalnaglraatgdyilflDaDdepdpdwle 98 
                      +l e les   q +y ++e+++  D ++D +  ++++l++++p+v+     +n G       k ++l+++ r++ +d+i++lD+ + +dp++l 
       CDO72982.1  56 NLYENLESTFTQ-EYANYELFFCVDDDEDQSLTVVRDLMAKYPHVKAHVAIRN-GvtvgvnpKVNNLMTAYRQVAHDIIWVLDSNVMVDPGTLA 147
                      68899*******.*********999999***************9998666666.32222444789***************************** PP

                      HHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.........E CS
  Glycos_transf_2  99 klvealekdgadvvlgqrprifgetdeiernkrv.........g 133
                      + v+ l+ ++++   ++r+   ++  ++ + +++         +
       CDO72982.1 148 RSVDILNPPPNSPRSPSRRIGVVHHVPYAWVTKHtlgsrieeaF 191
                      **999999877766666666666666666666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.47
# Mc/sec: 2856.56
//
Query:       CDO72983.1  [L=486]
Description: hypothetical protein BN946_scf185007.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-09   35.1   0.0    3.2e-08   33.3   0.0    2.0  1  F-box-like  F-box-like
  ------ inclusion threshold ------
       0.01   16.2   2.0        2.5    9.0   0.0    4.5  4  LRR_1       Leucine Rich Repeat
      0.036   14.0   0.0       0.17   11.8   0.0    2.2  1  F-box       F-box domain
        0.1   11.4   0.1       0.18   10.7   0.1    1.3  1  DUF5565     Family of unknown function (DUF5565)
       0.16   12.0   0.0       0.41   10.6   0.0    1.7  1  HTH_15      Helix-turn-helix domain of alkylmercury lyase
        1.1    9.5   3.1        7.4    6.9   0.0    3.6  3  LRR_6       Leucine Rich repeat
        4.5    7.8   8.4         12    6.4   0.0    4.7  6  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.3e-11   3.2e-08       3      47 ..      47      94 ..      45      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.3e-11
  F-box-like  3 rLPdEiLlqIFsyL.ppsd..LlrlalVCrrWrrvaldtplLWrrlvl 47
                +LP Ei  +IFs + +      l la+VC+ Wr  +  tp +Wr+lvl
  CDO72983.1 47 NLPVEIATTIFSMIlEEDHllVLTLAQVCKNWRATVIGTPAFWRTLVL 94
                8***********86355544344579*******************997 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         7   1.8e+04       2      12 ..     138     148 ..     138     162 .. 0.64
   2 ?    1.4   0.1      0.31   7.8e+02       1      12 [.     216     227 ..     216     256 .. 0.83
   3 ?    9.0   0.0   0.00097       2.5       2      11 ..     395     404 ..     394     417 .. 0.84
   4 ?    1.0   0.0       0.4     1e+03       2      12 ..     446     456 ..     446     471 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L + ++ +
  CDO72983.1 138 LETLRMFRCEG 148
                 78888877764 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.31
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L L+ +p 
  CDO72983.1 216 RLTSLSLEKCPV 227
                 699*******94 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00097
       LRR_1   2 LrhLdLsnnp 11 
                 L+hLdLs++p
  CDO72983.1 395 LQHLDLSHCP 404
                 9********9 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.4
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L + ++p+
  CDO72983.1 446 LESLIIDGCPN 456
                 89********8 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.7e-05      0.17       4      36 ..      46      81 ..      43      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
                HHS-HHHHHHHHHTS-HHH...HHHHCTT-HHHHHH CS
       F-box  4 srLPsevlrhILerLplsd...llalrrVSkgwril 36
                 +LP e+   I++     d   +l l++V+k+wr  
  CDO72983.1 46 GNLPVEIATTIFSMILEEDhllVLTLAQVCKNWRAT 81
                5788887777777766666888************75 PP

>> DUF5565  Family of unknown function (DUF5565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   6.9e-05      0.18     162     218 ..     336     393 ..     328     421 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.9e-05
     DUF5565 162 eaevalvlresaeeedlleitavpleelleqtleliGtnvn.anPyglGskkkPvhll 218
                  +++al+l   +  + l  +++  l+ +    lel+ t +    Py+ G k +Pvh+ 
  CDO72983.1 336 SVKAALLLEVLKAAKALESLQITHLSGVALPVLELLATPIGeKKPYRQGDKASPVHCP 393
                 6778888888766555555667789999999*********6268************95 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.41       4      35 ..     424     455 ..     421     462 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
      HTH_15   4 tqlseslakgeeggssaellrpLlrlLakGep 35 
                 t ls+     +e+g++++l+rpL  l+++G p
  CDO72983.1 424 TALSDVVRTNDESGTTPTLVRPLESLIIDGCP 455
                 7788999999********************88 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.75   1.9e+03       3      13 ..     215     225 ..     214     228 .. 0.82
   2 ?   -0.8   0.1      0.87   2.2e+03       4      11 ..     326     333 ..     325     337 .. 0.85
   3 ?    6.9   0.0    0.0029       7.4       1      14 [.     391     404 ..     391     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.75
       LRR_6   3 thLteLdLsgN 13 
                 t Lt+L+L  +
  CDO72983.1 215 TRLTSLSLEKC 225
                 67*****9887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.87
       LRR_6   4 hLteLdLs 11 
                 +Lt+L+L+
  CDO72983.1 326 TLTTLSLQ 333
                 89***997 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0029
       LRR_6   1 snthLteLdLsgNd 14 
                 +++ L++LdLs++ 
  CDO72983.1 391 HCPALQHLDLSHCP 404
                 67779********7 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   4.9e+03      13      28 ..     155     172 ..     138     175 .. 0.67
   2 ?    2.2   0.3       0.1   2.6e+02      18      33 ..     205     225 ..     198     230 .. 0.68
   3 ?   -2.2   0.0       2.6   6.6e+03      21      33 ..     272     283 ..     264     293 .. 0.70
   4 ?   -2.1   0.0       2.4   6.2e+03      22      30 ..     297     305 ..     274     313 .. 0.70
   5 ?   -1.2   0.1       1.2   3.1e+03       3      14 ..     327     336 ..     326     368 .. 0.46
   6 ?    6.4   0.0    0.0049        12      21      33 ..     391     403 ..     385     412 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
                 --E-S-HH.H.-TT--EE CS
       LRR_4  13 ltdiplle.k.lpnLkeL 28 
                 l +ip+l+ + l +L +L
  CDO72983.1 155 LASIPNLSaGvLASLDTL 172
                 556777555557777776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.1
                 -..HH..H.-TT--EEE-.-S CS
       LRR_4  18 l..le..k.lpnLkeLdLsgN 33 
                 +  l+  k l+ L++L+L  +
  CDO72983.1 205 SnlLSiaKrLTRLTSLSLEKC 225
                 444223466999999999665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.6
                 H-TT--EEE-.-S CS
       LRR_4  21 klpnLkeLdLsgN 33 
                  lp L+ + +  N
  CDO72983.1 272 ALPELHFIKI-TN 283
                 4899999988.55 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.4
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                  p+Lk L++
  CDO72983.1 297 TPSLKMLHI 305
                 577777776 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.2
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 L++L+L+   l+
  CDO72983.1 327 LTTLSLQR--LS 336
                 56666664..33 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.0049
                 H-TT--EEE-.-S CS
       LRR_4  21 klpnLkeLdLsgN 33 
                  +p L++LdLs++
  CDO72983.1 391 HCPALQHLDLSHC 403
                 5899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3568.26
//
Query:       CDO72984.1  [L=336]
Description: hypothetical protein BN946_scf185007.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-39  134.3   0.0    6.5e-38  130.6   0.0    2.0  1  TatD_DNase    TatD related DNase
  ------ inclusion threshold ------
       0.02   15.2   0.0       0.04   14.2   0.0    1.5  1  Hydrolase     haloacid dehalogenase-like hydrolase
      0.029   14.7   0.2        2.6    8.4   0.0    2.6  2  Nif11         Nif11 domain
      0.052   13.3   0.0       0.17   11.6   0.0    1.9  2  Amidohydro_2  Amidohydrolase
       0.15   12.4   0.0       0.48   10.8   0.0    1.7  2  Radical_SAM   Radical SAM superfamily


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   1.8e-41   6.5e-38      13     254 ..      21     330 ..      12     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.8e-41
                 TTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGC......C.CCHHHHHHHH..HHC.CCTSEEEEEEEEEET-CCC CS
  TatD_DNase  13 eedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevde......asedlleelkel..anv.khskvvaiGeiGLDyysre 102
                 ++d ++ lera++agv+ ++ +g s+++sk+++elak+     ya++G+HP+++++        e+ le+l++l  an+  + +vva+Ge+GLDy ++ 
  CDO72984.1  21 SDDMDAMLERARAAGVKSMIITGGSLHESKEAIELAKQLG--FYATAGCHPTRSAQfdkfrgGPEKYLEALDKLiaANLtGKGRVVAVGECGLDYDRTH 117
                 56889999*****************************977..6********99999888887567777888887644444789************5444 PP

                 CCGH.....................HHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCG.GCCS.......EEEETT--S-HHHHHHHHHTTE CS
  TatD_DNase 103 estk.....................eaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaa.eaka.......kvvlHsfsgsaeeakkflklgy 172
                  ++k                         ++   ql+lAk+++ pl++H+r+a++d+++il+e++ +++        ++v+Hsf+g++eea++++   +
  CDO72984.1 118 FAPKdvqrrhfrslhpgltiasyrtVLTVQLAGSQLALAKKYHMPLFLHSRAAHQDFVQILREEGfDKDGgkavggrGGVVHSFTGTVEEAAEVVGPSS 216
                 444477788899999*****888877777888899**************************99986555578899999*****************4444 PP

                 EEEE-GGGGTTTTHHHHHHHHHS-GGGEEE---TTSSEE..................................CCCTTSE--GGGHHHHHHHHHH.HHT CS
  TatD_DNase 173 yislsglltfknakelrelvkavpldrlLiETDaPyltp..................................kpyrgkrnepanvayvveklae.lka 236
                 +  ++g++   ++++  +++k++  d++++ETDaP+++                                    p +  rnepa++  v+ ++ +   +
  CDO72984.1 217 STYVNGCSL--KTEHNLAAAKSIRPDKIMLETDAPWCSLtsthaskahlaslppalsnlyfppatkpeafvygRPVK-GRNEPAAIGGVAWVIHKlNEG 312
                 444555444..477778899*******************9*************************999998887776.7****************6667 PP

                 S-HHHHHHHHHHHHHHHH CS
  TatD_DNase 237 ltleelaeitaeNakrlf 254
                 +++e++ e++++N+ ++f
  CDO72984.1 313 VPFEKVTEKAWKNTIEVF 330
                 **************9999 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05      0.04     110     197 ..      11     107 ..       3     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEH...HHHHHHHHHTT..GGGESEEEEHHCES....STTT..SHHHHHHHHHHH...T..STGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx..xxxxxxxxxxxxxx....xxxx..xxxxxxxxxxxx...x..xxxxx RF
   Hydrolase 110 vftiadplkvkpeaaeavasLkaagievvlltgdnp...etaeraanqlG..ddyfdaviasdiet....vakp..spegkvaaireL...q..gkpee 192
                 v + +d+ +  +++  ++++ +aag++  ++tg++    + a ++a+qlG  +       ++ +             pe +++a+++L   +  gk+ +
  CDO72984.1  11 VAASSDTASSSDDMDAMLERARAAGVKSMIITGGSLhesKEAIELAKQLGfyA----TAGCHPTRSaqfdK--FrgGPEKYLEALDKLiaaNltGKG-R 102
                 456679999999*********************99877788889999999432....22222222244332..233589999999999543254555.8 PP

                 EEEEE CS
                 xxxxx RF
   Hydrolase 193 vamVG 197
                 v++VG
  CDO72984.1 103 VVAVG 107
                 99998 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.028        99      30      42 ..      50      62 ..      45      65 .. 0.83
   2 ?    8.4   0.0   0.00072       2.6      28      42 ..     170     184 ..     165     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.028
       Nif11 30 eevvalAkeaGye 42
                 e ++lAk++G+ 
  CDO72984.1 50 KEAIELAKQLGFY 62
                6899********6 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00072
       Nif11  28 dheevvalAkeaGye 42 
                  h+++v++ +e+G++
  CDO72984.1 170 AHQDFVQILREEGFD 184
                 59************8 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.53   1.9e+03     132     156 ..      25      55 ..      11      80 .. 0.61
   2 ?   11.6   0.0   4.7e-05      0.17     236     271 ..     233     268 ..     197     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.53
                   HHHHHHHHHHT-EEEEE..........CHHH CS
  Amidohydro_2 132 rpifealeelglpvdihtGps......pewl 156
                   +  +e++++ g+  +i tG+s      + +l
    CDO72984.1  25 DAMLERARAAGVKSMIITGGSlheskeAIEL 55 
                   6788999999999999988666655553333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.7e-05
                   HHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH CS
  Amidohydro_2 236 lieavgpdrilfGsDyPhptleaepealalldlval 271
                   + + + pd+i+  +D P+++l+ +++  a l+ + +
    CDO72984.1 233 AAKSIRPDKIMLETDAPWCSLTSTHASKAHLASLPP 268
                   566677******************999998877554 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.48      53     148 ..      14     102 ..       9     113 .. 0.84
   2 ?   -2.1   0.0       1.3   4.5e+03     115     143 ..     158     184 ..     132     213 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                  ESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG.HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  53 gggepllypdfvellerlaklavpgiritvetngtlpd.eeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdr 148
                  ++++ +  +d+   ler+++    g++  ++t g l++ +e +e+ ++lg  + + g + + + ++ k     +++e++leal+kl +a++   + r
   CDO72984.1  14 SSDTASSSDDMDAMLERARAA---GVKSMIITGGSLHEsKEAIELAKQLG-FYATAGCHPTRSAQFDKFR---GGPEKYLEALDKLIAANLT-GKGR 102
                  667777888999999999997...**************************.8899888888888777777...78***********999887.5544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                  HHHHHHHTCTSHHHHHHHHHHHHHHTTSE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 115 ekvlklmnrghtfeevlealeklreagik 143
                  + ++ ++   h++ +  + +++lre g++
   CDO72984.1 158 K-YHMPL-FLHSRAAHQDFVQILREEGFD 184
                  4.55555.556666666777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2236.26
//
Query:       CDO72985.1  [L=344]
Description: hypothetical protein BN946_scf185007.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-71  238.9   0.2    8.2e-71  238.4   0.2    1.2  1  Thiolase_N     Thiolase, N-terminal domain
      6e-08   32.4   0.0    1.3e-07   31.2   0.0    1.6  1  Thiolase_C     Thiolase, C-terminal domain
     0.0024   17.5   0.8      0.022   14.4   0.0    2.8  4  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.038   13.8   0.0        7.7    6.4   0.0    2.4  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   0.2   1.8e-74   8.2e-71       1     259 [.      32     286 ..      32     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 1.8e-74
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 vvi  a r+p+ k ++g++kd++++eLl e+ k+++++  +dp+ ++++ vG+vl+ag+    ar aal+agipe+vp +tvn+ csSgl+av+++ ++
  CDO72985.1  32 VVITMAIRSPLCKaKKGAFKDTKSDELLYEIFKQAIARSTIDPALIQDITVGTVLTAGAPY-QARYAALAAGIPETVPLQTVNRWCSSGLMAVTDISNK 129
                 89***********9******************************************98754.79*********************************** PP

                 HHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTB CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdei 197
                 i+ag++++ +a+G Esm+++p +      s +   ++ a+d  +p+           G t+en+a++++isR++ defA+ s+q+a++a k+g F+ ei
  CDO72985.1 130 IRAGQIEIGLAVGFESMTDSPDRGG-PPQSDVIKASQAARDASMPM-----------GWTSENVAEEFDISRNDMDEFAALSYQRAEKADKEGIFAAEI 216
                 **********************998.67777777778888888776...........****************************************** PP

                 E-EEEEESSSEE......EE-S-TTS-TT--HHHHHTS-BSSSTTS..S-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 198 vPvkvkgkkgkk......tvdkdeairsevtaekLaklkpaFkkeG..tvtAgnasqisDGaaavllmse 259
                 vP++  +k+  +      +v+kd++ir ++t e+L k+kpaF + G   +t gnasqi+DGaaavllm++
  CDO72985.1 217 VPFTAYVKDPATgqrttkIVTKDDGIRYGTTKENLMKIKPAFPQWGraQTTGGNASQITDGAAAVLLMTR 286
                 ****99998764467778*************************9974369******************86 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     3e-11   1.3e-07       2      47 ..     295     340 ..     294     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3e-11
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEi 47 
                 k+lak ++ ++ g  p+i+g+gP  ai++vl+ +gl+ +d+dlfE+
  CDO72985.1 295 KILAKHVTTSVCGLAPRIMGIGPSIAIPMVLEATGLSKDDVDLFEV 340
                 889999***************************************7 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.26   1.2e+03      90     129 ..      57      96 ..      44     108 .. 0.79
   2 !   14.4   0.0   4.9e-06     0.022     170     207 ..     111     148 ..     106     169 .. 0.89
   3 ?   -2.0   0.0      0.46   2.1e+03      71      99 ..     181     206 ..     152     211 .. 0.74
   4 ?   -1.4   0.0      0.32   1.4e+03     236     253 .]     272     289 ..     262     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.26
                    HHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHH CS
  ketoacyl-synt  90 rllleaawealedagltpeeldgsrvgvfiGvgagdyaal 129
                     ll e  ++a++++ ++p+ +++  vg ++ +ga  +a +
     CDO72985.1  57 ELLYEIFKQAIARSTIDPALIQDITVGTVLTAGAPYQARY 96 
                    688899999*********8888888888888877644444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.9e-06
                    EEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 170 tvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207
                    tv   CsS+l+av  + +++r+g++++ la G e ++ 
     CDO72985.1 111 TVNRWCSSGLMAVTDISNKIRAGQIEIGLAVGFESMTD 148
                    66667*****************************9876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.46
                    GTTSTHHHHHHHCTS-HHHHHHHHHHHHH CS
  ketoacyl-synt  71 dpeffgispreaeamdpqqrllleaawea 99 
                     +e f is +    md ++ l+ + a++a
     CDO72985.1 181 VAEEFDISRN---DMDEFAALSYQRAEKA 206
                    4667888888...8999999998888876 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.32
                    B-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 236 fvlGEGvGavvLkrleda 253
                      +++G++av+L+++++a
     CDO72985.1 272 SQITDGAAAVLLMTRRKA 289
                    56789*******998776 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0017       7.7       3      40 ..     112     149 ..     111     160 .. 0.89
   2 ?    4.8   0.0    0.0057        26      52      68 ..     274     293 ..     263     304 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0017
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGC CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlski 40 
                  +n  Cs+ ++a+   ++ i++g+++  L +g e +++ 
   CDO72985.1 112 VNRWCSSGLMAVTDISNKIRAGQIEIGLAVGFESMTDS 149
                  5778***************************9998764 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0057
                  B-EEEEEEEEEEE...SSSS CS
  ACP_syn_III  52 fGDGAgAvvleas...eeeg 68 
                    DGA+Av+l +    e+ g
   CDO72985.1 274 ITDGAAAVLLMTRrkaEQLG 293
                  67********9884333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2224.20
//
Query:       CDO72986.1  [L=772]
Description: hypothetical protein BN946_scf185007.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-08   33.8   0.6    4.4e-08   33.0   0.6    1.3  1  Hepar_II_III  Heparinase II/III-like protein


Domain annotation for each model (and alignments):
>> Hepar_II_III  Heparinase II/III-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.6   2.5e-12   4.4e-08      14     190 ..     513     717 ..     512     747 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.5e-12
                   EEEEES.....T-EEEEEEEECTCTTB.CTTS-S-TTEEEEEETTEESS---C-SSTTT...........HHHHHHHTSGGGSSSEEETTBS--HCC CS
  Hepar_II_III  14 yavlra.....gatvlvvdagppgpgdlsghaHaDtLsfelssggqrlivdcGtytygg...........pewrnaarstaaHNTlvvdgksssrfa 94 
                   +a +r+     +a +++++ g+    ++  h+  D + f+l + g r+    G+++y +           ++w  +++ ++  NT++++g+++   a
    CDO72986.1 513 WAAMRSswtdeNALYVAMKFGKNQ--GHQTHNDLDVGDFVLDAMGTRWAGELGSGDYRSenyfsndtqesERWLYYRKRSEGQNTVLFNGQNQLVTA 607
                   5667777777788*********98..3457999999*********************************666**********************555 PP

                   CHHSCCEEE........EEEEEEESSSEEEEEE...EEEEET.TTTEEEEEEEEEETT.TEEEEEEEEECSEEEEEEEEEEEESTTECEEEETTTTE CS
  Hepar_II_III  95 gkfrlgrra........evereeeeggvellaa...ehdgyaapfgvvhrRtllsldg.eslrveDslegsgehepfalrfhlhpdvevslgadgag 179
                    ++ l+++         +v ++ +++++ +++    +   y     +++ R ++ l+g ++++++D+++ s++   +++r h +  v+v   ++  +
    CDO72986.1 608 LPQILQNLTtgeaqgssTVMDVPSDSTALFTGDltsADASY---GVTTWKRGIRLLNGrKQVLLQDDINTSTS---VMWRMHTNATVSVDGTSATLT 698
                   55555555544444544555555566666665576344445...88889999999999999*********999...999999987776655544444 PP

                   E........EEESTTEEEE CS
  Hepar_II_III 180 v........llalpsgeaw 190
                   +        ll+ psg+++
    CDO72986.1 699 IgdkklqmtLLNPPSGATI 717
                   4555555544444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5033.38
//
Query:       CDO72987.1  [L=439]
Description: hypothetical protein BN946_scf185007.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        5.4    6.1  26.3        8.6    5.4  26.3    1.3  1  SOG2            RAM signalling pathway protein
        6.5    6.4  26.6         13    5.4  26.6    1.5  1  PAP1            Transcription factor PAP1
        7.1    6.4   9.6         10    5.9   9.6    1.1  1  RIFIN           Rifin
        7.4    6.0   9.3         10    5.5   9.3    1.3  1  SMYLE_N         Short myomegalin-like EB1 binding proteins, N


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  26.3    0.0019       8.6     252     406 ..     101     242 ..      27     254 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0019
        SOG2 252 nsaspaangaqsetsersasssgvqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastprslattpappasaesfastl 350
                 ++++ a  + + + + + +    ++ sa+st  g+g++++  + + +++s+t+s +t tsss  +sss++++++sas  +s +tt+a      s  +t+
  CDO72987.1 101 TGTGTATGTGTATGTGTGTA---TSLSATSTTTGSGTSTS--TGTDTNTSGTSSATTATSSSAASSSSSVASSSSASSTSSAPTTSA------S--PTS 186
                 12222111111111111111...11111111122222222..233333333333334444444444444433333333333333333......1..122 PP

        SOG2 351 tasrintlaavDeqlletletavklalvvysqlteeiskvaeassagqqrlteela 406
                 t+ +  t+++ D+   +  +  +++ lv+    +++ s+++ as++g+++++ +++
  CDO72987.1 187 TQDSAPTFTSADDPDTQDATHHTSTHLVTVTDTSSQASQTGAASTTGATSTSAKIT 242
                 23345556667888888888888888888888999999999888887777766554 PP

>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  26.6    0.0029        13      58     165 ..      81     199 ..      26     247 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0029
        PAP1  58 tsaststtssvesasasssesknqrsnslealtkednnnysnsaanegltrgsta.ssaesqsstysansgtstssdSPsssseshqgqlSScgTSPEP 155
                  + + ++t +++++ ++s+++ + + ++  + t++ + +  +s   + +t gs++ +s+ ++++t  ++s+t+  s S +sss+s ++ +S + TS  P
  CDO72987.1  81 GQGTGTSTGTATATATGSATTGTGTATGTGTATGTGTGTA-TSLSATSTTTGSGTsTSTGTDTNTSGTSSATTATSSSAASSSSSVASSSSASSTSSAP 178
                 3344444555555555666666555555555555555544.3334444444444414444444444445555555788888888888888888899998 PP

        PAP1 156 stq.SPaakk..........s 165
                  t+ SP+ ++           
  CDO72987.1 179 TTSaSPTSTQdsaptftsadD 199
                 775377666654443332221 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.6    0.0023        10     135     294 ..      88     251 ..      69     257 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0023
       RIFIN 135 kkaalaaaieaaie.......ageaagikaviellkkllklsel.kekkleslitatnyknvtslvkaikeeyeescllklkkskaaltsakekekkea 225
                 + +a+a+a+ +a++       +g+a g+ +   + ++l  +s++ ++ + +s+ t tn + ++s ++a ++   +s+ + +++s+a  ts++ +++++ 
  CDO72987.1  88 TGTATATATGSATTgtgtatgTGTATGTGTG--TATSLSATSTTtGSGTSTSTGTDTNTSGTSSATTATSSSAASSSSSVASSSSASSTSSAPTTSASP 184
                 3344555555555553322222223333333..223333333331222222223444444444444444444333333322222222222222222222 PP

       RIFIN 226 sskekikkkvekivekaekkaaaaaaeaaaeataeaekaetaaveattaslqtaiiasivaivvIvLim 294
                 +s++    + +++ +  +++a+++++++  ++t++    +++++ a++++  t+  a i+   +IvL+ 
  CDO72987.1 185 TSTQDSAPTFTSADDPDTQDATHHTSTHLVTVTDTSS--QASQTGAASTTGATSTSAKITRTTIIVLVA 251
                 2222222222222223333333333333333333322..233333333444444444455555555554 PP

>> SMYLE_N  Short myomegalin-like EB1 binding proteins, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.3    0.0023        10     194     279 ..     127     208 ..     112     293 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0023
     SMYLE_N 194 siscgpstrysasvgeeeeavselaaaelaeaksssegesleeespassvesLdtavdvvkpakkkeeesekeakedeksdslsee 279
                 s+  g    +s+s+g++ +++ + +a++++++++ s+++s++++s+ass +s  t+    +p++++++  + ++++d  +++ +++
  CDO72987.1 127 STTTGSG--TSTSTGTDTNTSGTSSATTATSSSAASSSSSVASSSSASSTSSAPTTSA--SPTSTQDSAPTFTSADDPDTQDATHH 208
                 2233333..3333333333333333444444444444455555555556555555444..33333333222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.50
# Mc/sec: 2632.85
//
Query:       CDO72988.1  [L=143]
Description: hypothetical protein BN946_scf185007.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.21   11.5   0.0       0.28   11.1   0.0    1.1  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.6e-05      0.28      36      84 ..      33      81 ..      27      96 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.6e-05
                 HHHHHHH.HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--T CS
  RsgA_GTPase 36 drfLvla.eekgiepvivlnKiDlleeeeeleelkeelealgyevllvsa 84
                 + +L+ + ++ +i+p++vl+K+D+   ++ + ++ ++l+al  e+ +v++
   CDO72988.1 33 TTYLTSVsNADRIRPILVLTKVDISGPAR-AAAWTKHLHALYPELRIVQV 81
                 5666665146789***********99999.99999999988555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1007.02
//
Query:       CDO72989.1  [L=418]
Description: hypothetical protein BN946_scf185007.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00081   19.3   0.0     0.0029   17.5   0.0    1.8  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.033   14.9   0.0       0.31   11.8   0.0    2.2  1  Methyltransf_25  Methyltransferase domain
       0.19   10.8   0.0        0.3   10.2   0.0    1.2  1  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.8e-07    0.0029      19     122 ..      91     207 ..      82     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.8e-07
  Methyltransf_23  19 klraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae............kakkaqkdqfdeqeaaepqgkfdlIv..lrevlehvp.d 97 
                      k+r+++r LdiG+G G +  + ++ + + t+v +s +  ++ +                +++ q+    +a+ +++++ ++  +r++   +p +
       CDO72989.1  91 KDRPPKRSLDIGTGLGLWVISSAKAWPQSTFVSISAQRTSWGPvvtspllqvgldMVNIQIPLQV---LDADLAERIQWAHtnMRHLASGIPeN 181
                      5899*******************************998888779999888887763333333333...56777888888883345688888863 PP

  Methyltransf_23  98 .ppellrqiatllkpgGylllsepla 122
                       +++++  i++ +kpg+ +++ e +a
       CDO72989.1 182 kWHAVFEEIRRVMKPGATIEIVEEDA 207
                      699**************999998655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.2e-05      0.31       2      96 ..      99     197 ..      99     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.2e-05
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHH.HHHHHTTTTEEEEESBCCGBSS.STTTEEEEEEEST.GGG.SSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaar.eraeeeglnvefvqgdaedlpf.edgsfDlvvssga.lhh.lsdedlekalkeiar 91 
                      Ld+G+G G +++  ak++++++++ +  + + +  +  + + + gl++  +q  ++ l+   ++++   + ++  l   +++++++++++ei+r
       CDO72989.1  99 LDIGTGLGLWVISSAKAWPQSTFVSISAQRTSWGPVVtSPLLQVGLDMVNIQIPLQVLDAdLAERIQWAHTNMRhLASgIPENKWHAVFEEIRR 192
                      8999999999999999986666666666666664433133333344333344334444421344666666665556666999************ PP

                      HEEEE CS
  Methyltransf_25  92 vLkpg 96 
                      v+kpg
       CDO72989.1 193 VMKPG 197
                      ****8 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     5e-05       0.3      56     102 ..     157     204 ..     143     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5e-05
                    H.HHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--SS-S.ST CS
  NAD_binding_4  56 k.elaerikvveGDlseprlGLseedlqelaeevdviihsaAtvnfde 102
                    + +laeri+  ++++ +   G++e++++ + ee+  ++  +At++++e
     CDO72989.1 157 DaDLAERIQWAHTNMRHLASGIPENKWHAVFEEIRRVMKPGATIEIVE 204
                    23789***************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2942.35
//
Query:       CDO72990.1  [L=645]
Description: hypothetical protein BN946_scf185007.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-50  169.4   7.8    8.3e-50  169.4   7.8    2.2  2  ThrE      Putative threonine/serine exporter
    5.8e-07   29.7   9.5    5.8e-07   29.7   9.5    2.5  2  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   7.8   9.2e-54   8.3e-50       2     240 ..     176     417 ..     175     418 .. 0.93
   2 !    4.1   5.6    0.0028        25     105     198 ..     489     584 ..     487     587 .. 0.75

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 9.2e-54
        ThrE   2 lilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsv.deeeesittvrrv.rsrgvnleklsevnelsreiaageisleeaeerLde 98 
                 ++lrl+++Ll++Ga+++r+e+++ ++++ l++ ++ +  +p+ i+v++ d +++ ++++  v     v l+ l++v++++r++ +++i++ e  e+L++
  CDO72990.1 176 FLLRLAKALLSFGAPSHRIESQLHSAGEILDV-HAAFVHLPNLIMVTFmD-TDTRTSETHFVrAGGRVALTSLHRVHAVYRDVLHDKIGATEGCEKLKR 272
                 89******************************.9**************66.4444455666658999******************************** PP

        ThrE  99 Ierskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlll.akrglnsfvleavaaflasllallavslglgln..pdaiiigsil 193
                 I +++p y  w+++l a ++a  +++l  gg+++d++++ l + ++++l l   +k++++ +v e+  ++++s++a+l++ l  g+   ++ai  ++++
  CDO72990.1 273 ILQARPLYDIWTRCLLAFFCASIICVLSfGGSIVDMFISGLSASVLQYLGLNAaSKSSIYANVYEISVSIIVSFIARLLGTLP-GNLfcYSAISSAGVV 370
                 **************999999999999977*********************99989**************************74.333345********* PP

        ThrE 194 lLvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 l++PG++++ a ++l s++++ G++R+v+ai+++l+++fG +++  +
  CDO72990.1 371 LILPGFTILIAALELTSRNILCGSVRMVYAIIYTLFLGFGLTIGSDF 417
                 ******************************************99765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0028
        ThrE 105 ryprwlvvlaaglaaaafallf..ggdwidflvaflagllggllrlllakr.glnsfvleavaaflasllallavslglglnpdaiiigsillLvPG 198
                 ++p+w++++ + + + + ++      + i+++++ + ++ +++++   +   +  s ++ a++af+++l++ +  ++ +g ++ + ++ ++l+LvP 
  CDO72990.1 489 PFPWWTMLFLVPMYSTFSSIANlqAIKSIQLPIMIVFSCAAYAANKGANYLiSDRSDIVSAFGAFIIGLCGNIYSRV-IGGTAFTSMVTGVLFLVPS 584
                 68889999988888885554443156888889999999999988888854404456688889999999999888886.6888899999999999996 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6  10.2     0.064   5.7e+02      15     126 ..     310     414 ..     291     420 .. 0.71
   2 !   29.7   9.5   6.5e-11   5.8e-07      13     128 ..     509     629 ..     497     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.064
      ThrE_2  15 ifnvpkrallvagllGavgwlvylllmelgvsialasflaalaigllsellArriktPvtvflipgllplvPGlaaYktvlslvqgnleeavengieal 113
                 i+ +   +l + gl +a   ++y  ++e+ vsi+  sf+a l+ +l ++l++         ++ +g++ + PG  +  ++l+l+++n+      ++ a+
  CDO72990.1 310 ISGLSASVLQYLGLNAASKSSIYANVYEISVSII-VSFIARLLGTLPGNLFC------YSAISSAGVVLILPGFTILIAALELTSRNILCGSVRMVYAI 401
                 5555566666677777777777777777777765.45666666666666665......45678899*********************776666666666 PP

      ThrE_2 114 liagalavGlvlv 126
                 + ++ l +Gl++ 
  CDO72990.1 402 IYTLFLGFGLTIG 414
                 6666666666654 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 6.5e-11
      ThrE_2  13 avifnvpkrallvagllGavgwlvylllmelg.vsialasflaalaigllsellArriktPvtvflipgllplvP.....GlaaYktvlslvqgnleea 105
                 a ++ ++  +l+++ ++ +++++ +  + +l      + s+++a++igl++++++r+i   +++ ++ g+l lvP     G+++ +   s++q +++  
  CDO72990.1 509 ANLQAIKSIQLPIMIVFSCAAYAANKGANYLIsDRSDIVSAFGAFIIGLCGNIYSRVIGGTAFTSMVTGVLFLVPsaignGGGLIQNYSSSTQ-QYSSS 606
                 55666777889999999999999999999955144568899***************************************9999998888877.699** PP

      ThrE_2 106 vengiealliagalavGlvlvsl 128
                 +e gi+++++ ++  +Gl+++++
  CDO72990.1 607 FELGIRMIQVSIGVTIGLFVSQI 629
                 *******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4323.35
//
Query:       CDO72991.1  [L=1331]
Description: hypothetical protein BN946_scf185007.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-70  235.6   0.0    9.6e-70  235.0   0.0    1.3  1  SNF2_N           SNF2 family N-terminal domain
    1.5e-14   54.3   0.0    1.8e-13   50.8   0.0    2.3  2  Helicase_C       Helicase conserved C-terminal domain
    8.6e-05   22.4   3.1     0.0002   21.2   3.1    1.6  1  zf-RING_5        zinc-RING finger domain
  ------ inclusion threshold ------
      0.033   14.2   0.1        1.6    8.7   0.0    2.8  2  ResIII           Type III restriction enzyme, res subunit
      0.083   12.8   3.9       0.22   11.4   3.9    1.7  1  zf-C3HC4         Zinc finger, C3HC4 type (RING finger)
       0.14   12.0   1.3       0.43   10.5   1.3    1.8  1  zf-C3HC4_2       Zinc finger, C3HC4 type (RING finger)
       0.19   11.8   3.2       0.55   10.3   3.2    1.7  1  zf-RING_UBOX     RING-type zinc-finger
       0.42   10.5   4.0       0.93    9.4   4.0    1.6  1  Prok-RING_4      Prokaryotic RING finger family 4
        4.5    7.7   7.0        2.5    8.5   0.3    2.6  2  zf-RING_2        Ring finger domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   4.8e-73   9.6e-70       1     349 [.     439     945 ..     439     946 .. 0.88

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 4.8e-73
                 HHHHHHHHH........................................HHHHHTT--EEE---TTS--HHHHHHHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
      SNF2_N   1 yQkeavkwmlkReqnlqdleaalrkllk.tldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqr.................. 80 
                 +Q++a+ ++l Req+ + ++     l++ + +     +  ++  + +e ++++++ +G iLaD+mGLGKT+++++li+a                    
  CDO72991.1 439 HQRKALTFLLAREQEWHGPNGKKLSLWQeRPNPLSQQTSWVNLVTQAEVFTKPEEAKGAILADDMGLGKTITCVSLIAATLrsarefaespltppptpp 537
                 9**************9887766555665444444455555555678899999**************************877999*************** PP

                 ...............................................HHTTTS---............S-EEEE--HHHHHHHHHHHHHH-TTS-EEE- CS
                 ...............................................xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  81 ...............................................akeekdkek.....krkdtlagptLivvPaslldqWeneierhvsssalrvl 127
                                                                       e+      r +  + +tLi++P s++ +We+++++h+++  + v+
  CDO72991.1 538 phpsdppllashfqgsvwnipplastssgtssgtlnkakakaareqdR-----VEAqytraCRIKVKSRATLIICPLSTVVNWEDQFKEHWRGE-VIVC 630
                 **********************99999999999988877665333331.....22266666778888899**********************99.5588 PP

                 -SSHHHH.........................................-----------------EEEE-HHHHHHHT..................... CS
                 xxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
      SNF2_N 128 vyggqkk.........................................mkkkntkvapklladydvvittYdvlsreaelq.................. 167
                  ++g+++                                          + + ++++p +lad+d vittY++l++e + q                  
  CDO72991.1 631 GGQGGSNppsqpstsalstptgsqvdikveapaksgrvrdgpplrvyvYHGNARRLDPSFLADFDAVITTYSTLASEFSKQtrsieaadeddeedggss 729
                 88888779***************************************999999**********************8877779***************** PP

                 .....................................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-T CS
                 ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 168 ..................................kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLre 232
                                                   +  s+l++v+w+rvvlDE+h +k   +    a ++L++++r++ltGTP+qn+l d+y+L+kfLr 
  CDO72991.1 730 dgfievdeagrpvtksskgkkgakkrkkpvgpvaEATSPLQSVHWFRVVLDEAHSIKEVSTVGCRASCDLVADRRLCLTGTPVQNKLDDVYALIKFLRL 828
                 *********************************999**********************98888888888****************************** PP

                 TTT--HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT....--..S---EEEEEEEEE--HHHHHHHH....................HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 233 epfgekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdv....ek..nlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalks 325
                 +pf++k+t+++ + +p++  ++ g++rL ++++ + lrr+k+      +k  +lPp+  e+++lk++++e+++Y +  + +  ++   ++k++   +k+
  CDO72991.1 829 SPFDDKNTWNEYIGTPVKYAQPLGVARLQTIMKCITLRRTKESRaedgKKilSLPPRRDELRYLKFDPYEQEIYDHFFKESKAEFHELTHKNE--VMKN 925
                 *****************************************988776533558**********************554444444444444433..3332 PP

                 HH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 326 sskskekilelllelrqacnhpql 349
                        il+ +l+lrq+c h +l
  CDO72991.1 926 Y----VGILQKILRLRQICDHYEL 945
                 2....349************9877 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.42   8.3e+02      71      88 ..     964     981 ..     964     994 .. 0.79
   2 !   50.8   0.0   8.8e-17   1.8e-13      17     111 .]    1177    1273 ..    1168    1273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.42
                 EESGGGTSSSTSTTESEE CS
  Helicase_C  71 iatdvaerGidipkvnlV 88 
                 + t+va +Gi+++++  +
  CDO72991.1 964 VVTSVARNGINLQNAAII 981
                 579**********87655 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 8.8e-17
                  SEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C   17 gkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111 
                   k+++f++ +++l+k++  le  +i++ +l+g+++ +er +++++ +   g   +L++ ++++ G++++ ++ V  +d+ +n++  +q+++R++R g
  CDO72991.1 1177 TKTVVFSQWTSMLDKIEDALEMANIRYDRLDGTMKREERTRAMDALKhdPGCEVLLVSLKAGGVGLNLTAAQRVYLMDPYWNPAVENQAVDRIHRLG 1273
                  69************9777778889**********************9855776699***************************************86 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   3.1     1e-07    0.0002      14      43 ..    1045    1083 ..    1029    1084 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1e-07
   zf-RING_5   14 kfyltsCgHifCekClkkll.........ekeavCpiCr 43  
                   ++lt+C+H fC  C+++++           +++C++C+
  CDO72991.1 1045 HPVLTRCQHLFCLPCFRNATfpgwpnvqpDVRRCCSTCQ 1083
                  499*************************999*******8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00081       1.6       4      53 ..     436     523 ..     433     527 .. 0.77
   2 ?    2.1   0.0     0.086   1.7e+02     106     144 ..     696     741 ..     680     813 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00081
                 E-HHHHHHHHHHT............................................TTSEEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII   4 lreyQeeaienlleklks......................................krdkrglikmaTGtGKTlvaaklierllkkgk 53 
                 l+++Q +a++ ll+  ++                                      ++ k ++++   G GKT+++++li++ l++++
  CDO72991.1 436 LYPHQRKALTFLLAREQEwhgpngkklslwqerpnplsqqtswvnlvtqaevftkpEEAKGAILADDMGLGKTITCVSLIAATLRSAR 523
                 667777777777755555666777777777777777777777777777788888888888999*****************99998866 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.086
                 EEEEEHHHHHHTH...............HHHTTT-SEEEEETGGGT CS
      ResIII 106 ilvttiqsldadseee.......eeeseellrdrfdviiiDEaHrl 144
                  ++tt+++l ++ +++       +e++ee + ++  +i +DEa r 
  CDO72991.1 696 AVITTYSTLASEFSKQtrsieaaDEDDEEDGGSSDGFIEVDEAGRP 741
                 5677777777777666666666533344444444444445554332 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.9   0.00011      0.22      12      41 .]    1047    1082 ..    1036    1082 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                  E.E-TTS--B-CHHHHHHHHC.......TSSB--TTT CS
    zf-C3HC4   12 nelleCkHsfCskCirkilks.......rkkvkCPlC 41  
                  + l+ C+H fC +C r+ +         +  ++C +C
  CDO72991.1 1047 V-LTRCQHLFCLPCFRNATFPgwpnvqpDVRRCCSTC 1082
                  4.89************988766666655555556666 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.3   0.00022      0.43      14      29 ..    1047    1062 ..    1043    1065 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
  zf-C3HC4_2   14 vvtpCgHvfCqkCilr 29  
                  v+t C+H fC  C++ 
  CDO72991.1 1047 VLTRCQHLFCLPCFRN 1062
                  789**********987 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.2   0.00028      0.55      10      25 ..    1045    1060 ..    1036    1079 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
  zf-RING_UBOX   10 dPlv.lpCGHtFCreCl 25  
                    +P v + C+H FC +C 
    CDO72991.1 1045 HP-VlTRCQHLFCLPCF 1060
                    68.5258*********8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.0   0.00047      0.93      10      40 ..    1045    1086 ..    1037    1092 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00047
  Prok-RING_4   10 kailepCgHlvCkeCfdskdls...........sCPlCqrri 40  
                   +++l  C+Hl+C  Cf ++ +             C  Cq ++
   CDO72991.1 1045 HPVLTRCQHLFCLPCFRNATFPgwpnvqpdvrrCCSTCQAEL 1086
                   578999**********99865433333355555555666555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3    0.0013       2.5      14      32 ..    1044    1062 ..    1038    1067 .. 0.76
   2 ?    1.0   1.7      0.27   5.4e+02       2      22 ..    1078    1099 ..    1077    1101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
   zf-RING_2   14 dsvlllpCgHvfhreCler 32  
                   +++l+ C+H f+  C+++
  CDO72991.1 1044 PHPVLTRCQHLFCLPCFRN 1062
                  4555557*********976 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.27
   zf-RING_2    2 eCpICleelssadsvlll.pCg 22  
                   C+ C+ el ++d v+++ +C+
  CDO72991.1 1078 CCSTCQAELGPHDAVQIDlDCS 1099
                  5***************877995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 9173.90
//
Query:       CDO72992.1  [L=812]
Description: Glycoside Hydrolase Family 20 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-11   42.5   0.2    3.3e-10   40.8   0.2    1.9  1  Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
    3.2e-09   36.6   0.0    9.9e-09   35.0   0.0    1.8  1  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
  ------ inclusion threshold ------
      0.083   13.2   0.0       0.18   12.2   0.0    1.4  1  PDZ              PDZ domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.2   5.5e-14   3.3e-10       4     124 .]      32     181 ..      29     181 .. 0.66

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 5.5e-14
  Glyco_hydro_20b   4 viPePq.eveaqegefalgsevtivveeaadeat................adllaevlk...aatgirlt....eakepgkgdirllalkd... 70 
                      ++P+++ +v+a+ ++f l+++v+++v+e  d++                  ++++++l+    +t ++l+    +++ +++  i l+ ++d   
       CDO72992.1  32 LVPAVHyHVSADVSAFHLPEHVNVIVNE-RDAYSttdngltlipptllafSQTFKADLDslfPQTTVTLSvgdaHKTFKETAVITLSLSDDlna 124
                      6666663455566668888888888888.33333245555555555555544555555544445555555444322333333333333333666 PP

  Glyco_hydro_20b  71 ....aelgaEgYrLavdedtitiegkdtdGlfyGvqTLrqllpqaaggtlpaveirDy 124
                           +  +EgY+++v   ++ i+g++++G+f++++TL+q l   + g++pa++i D+
       CDO72992.1 125 tfadGSVTTEGYEMDVSTARVQITGAGSKGVFWATRTLLQGLVLTG-GRFPAGKIVDQ 181
                      666699**********************************999965.9********95 PP

>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.7e-12   9.9e-09       6     211 ..     212     399 ..     207     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.7e-12
  Glyco_hydro_20   6 lmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieVipEidm 100
                     ++ Dv+R+++++  ++ l    +++K+  +H Hl+D+ + r ++++y +      + +    + +l  +Y++e+ +   +  a+rg++       
      CDO72992.1 212 MLADVGRQWYPITFLQDLCTYASWYKVSEFHVHLSDNVSPRGNFNAYARFRLRPEDPALAGLTPHLNETYSREEFEAFQAGCAARGVT------- 299
                     568**********************************************9988666665555566777*******************5....... PP

  Glyco_hydro_20 101 PgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkkkqwkkspe.iqali..keeglk 192
                     PgHa  + ++ pel+ +              ++ +++n t ++++  ++++ +e +  f+++ v iG+DE++++   + ++ +++++  ++  + 
      CDO72992.1 300 PGHALVITQWKPELALS--------------TDPTLINLTVPDAIPTIKSIWKEFLPWFQTRQVSIGADEYNASLADDYNNfVNEMVhlRRSSVL 380
                     **********9999987..............456799**********************************966554433313333300333344 PP

  Glyco_hydro_20 193 sveelqsyfvkrvekilke 211
                     +v +l   +++r+++++++
      CDO72992.1 381 EVLKLRLTVYHRATTFINK 399
                     4555566666777766666 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.18      13      58 ..     723     768 ..     714     771 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                 SEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEET CS
         PDZ  13 GfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdv 58 
                 +f+l+   + +++++i+ + ++ g +a +dg+++GD ++s+++++v
  CDO72992.1 723 NFTLSARHASEAAEEIVLTGTENGTSAFVDGVHAGDFLTSIDQTSV 768
                 57777777777899*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 5249.33
//
Query:       CDO72993.1  [L=281]
Description: hypothetical protein BN946_scf185007.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-08   35.7   0.1    2.3e-08   34.6   0.1    1.6  1  dsrm             Double-stranded RNA binding motif
     0.0075   16.4   0.0      0.017   15.3   0.0    1.5  1  Ribonucleas_3_3  Ribonuclease-III-like
  ------ inclusion threshold ------
      0.078   13.2   0.0       0.13   12.5   0.0    1.3  1  AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dime


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   3.9e-12   2.3e-08       4      65 ..     214     273 ..     212     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.9e-12
                 HHHHHHHHTTSEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm   4 kLqeycqkkgkppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedale 65 
                 ++++ +q+++  ++ +y+ + ++p +  +++v++ vng + g+G+g +K++A+  AA +a+ 
  CDO72993.1 214 LFNQTAQQRR--LEVQYPAQFSGPAHAGRWTVQCLVNGIEKGIGTGPSKQLAKEEAARQAYH 273
                 6899*****9..6666667766666659*******************************986 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-06     0.017       6     120 ..      17     134 ..      12     139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-06
  Ribonucleas_3_3   6 eqaltHkSfangrk........ghNerLefLGdavLklsvseyllekaekdegeltklraslvs.eeslaeiAkelgLgkvlrlrkgeeetegs 90 
                      +++++H+S +            g   rL++LG+++L+ +++++l+++  +  +++ +++  + + +e+++e  +  +  + +r     +++ + 
       CDO72993.1  17 LEVFVHRSMKFSGAplnsdspyGDGARLAVLGSKILEAVYTDVLFNQRPMLPADDIRKQ--VSKlQEKVNEWVEGYRWREKVRCTP-GTKLDAP 107
                      56667777633222122223334578*******************99888555554444..2223788999999999999999955.4556778 PP

  Ribonucleas_3_3  91 grekvladaleAliGAiyldkgaevaqefv 120
                      ++++vl d   + +GA+++ +g++++++++
       CDO72993.1 108 EETRVLFD---SYVGAVFVGGGYKAVRDWI 134
                      88888876...5689999999999998887 PP

>> AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05      0.13      89     120 ..      68      99 ..      46     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
  AcetDehyd-dimer  89 deeaieesveemveevqeyvPGYrlkqevqfd 120
                       +++i+++v++++e+v+e+v GYr +++v+++
       CDO72993.1  68 PADDIRKQVSKLQEKVNEWVEGYRWREKVRCT 99 
                      4699********************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1979.44
//
Query:       CDO72994.1  [L=1812]
Description: hypothetical protein BN946_scf185007.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-60  204.2   0.2    3.6e-60  203.5   0.2    1.3  1  SNF2_N           SNF2 family N-terminal domain
    2.4e-21   76.2   0.7    5.6e-21   75.0   0.7    1.5  1  HDA2-3           Class II histone deacetylase complex subunit
    2.4e-20   72.9   0.0    1.3e-19   70.5   0.0    2.3  2  Helicase_C       Helicase conserved C-terminal domain
    5.7e-11   42.3   7.1    2.6e-08   33.6   0.4    3.5  3  zf-PHD-like      PHD/FYVE-zinc-finger like domain
    8.2e-09   35.7   0.2    2.2e-08   34.3   0.0    1.8  2  ResIII           Type III restriction enzyme, res subunit
    0.00022   21.1   1.1      0.093   12.7   0.0    3.4  2  Chromo           Chromo (CHRromatin Organisation MOdifier) do
      0.001   18.3   0.0     0.0021   17.3   0.0    1.4  1  ERCC3_RAD25_C    ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
       0.12   12.2   0.1         19    5.1   0.0    3.4  4  Glycos_transf_2  Glycosyl transferase family 2
          1    9.3   8.4        6.8    6.7   0.1    3.8  4  PHD              PHD-finger
        3.6    7.6   5.0        3.1    7.8   0.9    2.8  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.5   0.2     2e-63   3.6e-60      50     350 .]     881    1168 ..     843    1168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 203.5 bits;  conditional E-value: 2e-63
                  HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH......------ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxx RF
      SNF2_N   50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk......mkkknt 140 
                  ++ + ++++iLaDemGLGKTvq++++i    +  +++k+         p+L+vvP s++++W++e+er++++ ++  ++++ +++      +  + +
  CDO72994.1  881 HNWNISQNCILADEMGLGKTVQIVTFIG---YLAANYKA--------YPALVVVPNSTITNWVREFERWAPKLRVVPFYGEAKSReiikkyELFHSS 966 
                  5667789*********************...88888886........5**************************97777777666898887555556 PP

                  -----------EEEE-HHHHHHHT......TTS-S-.S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  141 kvapklladydvvittYdvlsreaelqkkrsvlkqv.ewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfg 236 
                  + ++++ a+y+v++ttY+++ + +e    + v+kq+ +w+ +v+DEg++lk+ ts + + +++L++ +r+i+tGTP+ n+ ++l+ L++fL +  ++
  CDO72994.1  967 FGKDTTGAKYHVLVTTYETITNAKE---FNPVFKQIpRWEVLVVDEGQRLKSDTSLIFKRLKELKSFHRVIMTGTPLNNNIRELFNLMNFLDPTEWK 1060
                  7889999**************8885...566777763699********************************************************* PP

                  -HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  237 ekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskeki 333 
                  + +     l++ +e+ +++ +++L+  l+++ lrr+k+dv  +lPpk+e i+ +++ + ++++Y   + ++  ++l+ l +  + +  ++s +k+++
  CDO72994.1 1061 DLEQ----LSKQYEQLTDELVRELHVRLKPYFLRRIKSDV-LQLPPKNEVIVPVSMAPLQKEIYR-SILSQNLEILQRLAEGTDSSKRNNSLTKSNM 1151
                  8765....5566888889**********************.************************.5555666788888888888888888777889 PP

                  HHHHHHHHHHHH---XX CS
                  xxxxxxxxxxxxxxxxx RF
      SNF2_N  334 lelllelrqacnhpqlv 350 
                   ++l++lr++++hp+lv
  CDO72994.1 1152 NNMLMQLRKCIQHPYLV 1168
                  **************986 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.7   3.1e-24   5.6e-21       7     256 ..    1106    1338 ..    1102    1359 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3.1e-24
                  EEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--.HHHH.HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHH CS
      HDA2-3    7 ylPtpltelqkelteqivslhyedllkyvetsdsqe.klslsikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnl 102 
                   +P+ +  lqke++  i+s   e l +  e +ds++ + sl+ + ++ +l +l+   +HP+L+ + + p+ l  +e+ e+l+  S+K+ +l+ l+  
  CDO72994.1 1106 IVPVSMAPLQKEIYRSILSQNLEILQRLAEGTDSSKrNNSLTKSNMNNMLMQLRKCIQHPYLVSEDIEPRGLSPEETHERLVAASAKLRLLKMLLPK 1202
                  69*********************9999998877665155566999***************************************************9 PP

                  HTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EE CS
      HDA2-3  103 iierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfd 199 
                  +  r       vl+ ++ +  ld+iE +l+G ++k+ r++g++ + + +k              +  +k  s+ +++l ttr         +   +d
  CDO72994.1 1203 LRTRG----HRVLLFSQFVIALDIIEDFLIGEGIKYLRLDGNTKQADRQKGM------------DEFNKPDSDIFIYLLTTRAGGVG---INLWSAD 1280
                  99999....9*******************************99988888887............22334456788888888887444...666778* PP

                  EEEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHTS-TT-HHHH CS
      HDA2-3  200 liiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfkkdedepeyl 256 
                   +i fD++++++++     r ++  +k+++ +++l++ +S e   ++  k++   ++l
  CDO72994.1 1281 TVIIFDPDFNPHQDLQAIARAHRYgQKKTVLVFKLMVKDSAEERIMQTGKKKLVLDHL 1338
                  ************998888888765144558999********99888888444444444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.2   5.7e+03      39      80 ..    1134    1177 ..    1114    1178 .. 0.72
   2 !   70.5   0.0   7.4e-23   1.3e-19       3     111 .]    1193    1305 ..    1191    1305 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.2
                  T.TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSS CS
  Helicase_C   39 k.gikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGi 80  
                    g  + + + +l++++ + +l q +k  ++ +L++ d+  rG+
  CDO72994.1 1134 AeGTDSSKRNNSLTKSNMNNMLMQLRKCIQHpYLVSEDIEPRGL 1177
                  24788888889999999999999999765556999988877775 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 7.4e-23
                  HHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    3 leallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlpr 95  
                  l+ l+ ll kl+ +g+++l+f++++  l+ ++ +l  +gik+++l+g+++q +r++ +++fn  + ++  +L++t++++ Gi++ ++++Vi+fd+++
  CDO72994.1 1193 LRLLKMLLpKLRTRGHRVLLFSQFVIALDIIEDFLIGEGIKYLRLDGNTKQADRQKGMDEFNkpDSDIFiYLLTTRAGGVGINLWSADTVIIFDPDF 1289
                  555566669*******************8877777888************************4423333489************************* PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  n+++  q+i R++R+g
  CDO72994.1 1290 NPHQDLQAIARAHRYG 1305
                  **************86 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   1.9    0.0032       5.7      66     144 ..     337     409 ..     326     424 .. 0.66
   2 !   33.6   0.4   1.5e-11   2.6e-08      87     169 .]     485     566 ..     443     566 .. 0.76
   3 ?    2.4   0.0     0.058     1e+02      34      58 ..    1140    1164 ..    1136    1178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0032
  zf-PHD-like  66 apkldvCqeCkeegksckpfrekktakqeeklreendgvdPiteveeelinnaenvlfRCaeCkrawhlehlpkkskks 144
                   +++++C++C+++ +  +  +  k+ k+ ++  ++++++d  t+v     n a     RC +C  a h+  l+k+++++
   CDO72994.1 337 RAHRSICEKCHTPPAHEQLKKLAKKGKKRRRFEDDDESEDEETRV-----N-ALGGWVRCLKCPVAAHWGCLAKTQRDE 409
                  457889999999876655444444445555555555555555554.....4.345678**************9998877 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.5e-11
  zf-PHD-like  87 ekktakqeeklreendgvdPiteveeelinnaenvlfRCaeCkrawhlehlpkkskkseeedeeelaeerlkeysikwkCkdC 169
                  +++t   +e   +  +++ P++  +ee  nn  ++lfRC +Ckr  h+ hlp  +     ed++ ++ +   ++s++w+C dC
   CDO72994.1 485 QQTTDASQEVPNDSTSATRPVVAQSEEDANNPPELLFRCLTCKRLAHYAHLPIPDGFD-PEDTTLAELALYYQHSTRWRCADC 566
                  3333333444455566788999999999************************999888.7888888888999*********** PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.058
  zf-PHD-like   34 saRehlvtkvgedsFvlqCrrCigl 58  
                   s+R+   tk + ++ ++q r Ci++
   CDO72994.1 1140 SKRNNSLTKSNMNNMLMQLRKCIQH 1164
                   7899*******************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.2e-11   2.2e-08       4     169 ..     868    1039 ..     865    1041 .. 0.77
   2 ?   -3.0   0.2       3.4   6.1e+03      47     127 ..    1300    1377 ..    1295    1387 .. 0.56

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.2e-11
                  E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG...........GEEEESSS- CS
      ResIII    4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.......igkkvsgdk 93  
                  l + Q e ++ l  ++  +  ++ +++ + G GKT+ ++ +i +l+ ++k   +l++vp+ ++++ + +ef++++++ +           +++    
  CDO72994.1  868 LMPFQVEGVNWLCHNW--NISQNCILADEMGLGKTVQIVTFIGYLAANYKAYPALVVVPNSTITN-WVREFERWAPKLRVVpfygeakSREII---- 957 
                  5566666666666666..466778899999******************************99975.9999*9999988655654444433333.... PP

                  B--.................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS- CS
      ResIII   94 kka..........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATp 169 
                    +          k     + ++lvtt++++++++   e +   ++  r +v+++DE  rl++++   +++ l+ +k++ ++ +T+Tp
  CDO72994.1  958 --KkyelfhssfgKDTTGAKYHVLVTTYETITNAK---EFNPVFKQIPRWEVLVVDEGQRLKSDTslIFKR-LKELKSFHRVIMTGTP 1039
                  ..2455555887877888899**************...4444444556667************85557888.566799*********9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
                  HH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........H CS
      ResIII   47 rllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeesee 127 
                  r ++ g+  k  +lv ++ + + ++e+++++ +++       + ++ ++ +  +++  +il++  ++l +++ee    + +
  CDO72994.1 1300 RAHRYGQ--KKTVLVFKLMVKDSAEERIMQTGKKKLV-LDHLIVQKMDDDSGTEEDVQSILMFGAKALFEENEESAARQIH 1377
                  4444333..4455666777788888888777777653.3333333333333445777777777777777777555444444 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.2e-05     0.093      17      51 ..     600     638 ..     571     639 .. 0.75
   2 ?    5.2   0.2     0.011        19      21      34 ..     788     801 ..     769     803 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
                 C....EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHH CS
      Chromo  17 e....leYlVKWkglpysentWEpeenlekcfqelideF 51 
                 +     eYlVKW + +y    W p   l  ++q ++++F
  CDO72994.1 600 KamlpREYLVKWVDRSYRRVQWVPHGWLLAMAQSKLKNF 638
                 1556679*****************887777889999998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
                 EEEETTSTGGGTEE CS
      Chromo  21 lVKWkglpysentW 34 
                 l KW++l y++++W
  CDO72994.1 788 LFKWQDLGYDDASW 801
                 66************ PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06    0.0021      40     175 ..    1187    1323 ..    1177    1371 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
  ERCC3_RAD25_C   40 vmnpnkfracefLikyhekrgDkiivfsDnvfaLkey.....akklkkpyiyGetseaerlkilqkfkknpkvntifl..skvgDtsiDlPean 126 
                     v  + k+r ++ L+    +rg ++++fs  v aL  +     ++ +k+  + G+t++a+r+k +++f+k ++   i+l   + g   i+l +a 
     CDO72994.1 1187 VAASAKLRLLKMLLPKLRTRGHRVLLFSQFVIALDIIedfliGEGIKYLRLDGNTKQADRQKGMDEFNKPDSDIFIYLltTRAGGVGINLWSAD 1280
                     66789*****************************875111125667778899***************9987766666534799*********** PP

  ERCC3_RAD25_C  127 vliqisshfgsrrqeaqrlGriLrakkksneeefnaffYsLvskDtkem 175 
                      +i  + +f    q+   l  i ra ++   +++    + L+ kD  e 
     CDO72994.1 1281 TVIIFDPDFNP-HQD---LQAIARAHRYG--QKKTVLVFKLMVKDSAEE 1323
                     *9999998875.344...55566666663..334445556666666554 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.01        19      86     115 ..      87     116 ..      86     157 .. 0.75
   2 ?    2.5   0.0     0.062   1.1e+02      15      51 ..     984    1026 ..     976    1043 .. 0.70
   3 ?   -1.5   0.0       1.1   1.9e+03      44      77 ..    1221    1252 ..    1219    1264 .. 0.81
   4 ?   -3.8   0.0       5.5   9.8e+03      74      95 ..    1273    1294 ..    1273    1312 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.01
                      EESSEEE-TTHHHHHHHHHHH.TTCEEEEE CS
  Glycos_transf_2  86 lDaDdepdpdwleklvealekdgadvvlgq 115
                      l +D e++p++l ++v++ e++g++ +++ 
       CDO72994.1  87 LESDAEVSPEDLDEIVGEVEDGGRAFFYVR 116
                      779******************988665554 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.062
                       HHHHHHHHH....GGCCEEEEEEEEES-..SSCHHHHHGGGCH CS
  Glycos_transf_2   15 etlesllaq....dpypdfeiivvDDgS..tDetveileelak 51  
                       et++ +++     +  p++e++vvD g   + +t  i ++l +
       CDO72994.1  984 ETITNAKEFnpvfKQIPRWEVLVVDEGQrlKSDTSLIFKRLKE 1026
                       5555555557777789***********8666666666666655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.1
                       HHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH CS
  Glycos_transf_2   44 eileelakedprvrvirreenvGkagalnaglra 77  
                       +i+e++   +++++++r++ n  k++ + +g+++
       CDO72994.1 1221 DIIEDFLI-GEGIKYLRLDGN-TKQADRQKGMDE 1252
                       67888875.99********99.898888888876 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5.5
                       HHHH--SSEEEEEESSEEE-TT CS
  Glycos_transf_2   74 glraatgdyilflDaDdepdpd 95  
                       g+  ++ d ++++D D  p+ d
       CDO72994.1 1273 GINLWSADTVIIFDPDFNPHQD 1294
                       667788999*******998886 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       6.6   1.2e+04      18      22 ..     343     347 ..     341     350 .. 0.58
   2 ?    6.7   0.1    0.0038       6.8      13      37 ..     385     409 ..     377     424 .. 0.83
   3 ?   -1.8   0.0       1.7     3e+03      41      50 ..     443     452 ..     430     454 .. 0.76
   4 ?    5.7   0.1    0.0075        13      10      50 ..     515     567 ..     507     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.6
                 ETTTS CS
         PHD  18 CdgCk 22 
                 C++C+
  CDO72994.1 343 CEKCH 347
                 55554 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0038
                 SCEEEETTTSCEEETTTSSSTHSHH CS
         PHD  13 eelvqCdgCkrwfHqkClkpplese 37 
                 + +v C +C  + H  Cl  ++++e
  CDO72994.1 385 GGWVRCLKCPVAAHWGCLAKTQRDE 409
                 56899*************9998754 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.7
                 SSTBSSTTTH CS
         PHD  41 egewlCekCk 50 
                 ++e++C +C+
  CDO72994.1 443 TTEFICGSCM 452
                 34899*9997 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0075
                 STTSCEEEETTTSCEEETTTSSSTHSHHSHHSS............TBSSTTTH CS
         PHD  10 deeeelvqCdgCkrwfHqkClkppleseekpeg............ewlCekCk 50 
                 + +e l  C +Ckr  H + l +p+  ++++++            +w C  C 
  CDO72994.1 515 NPPELLFRCLTCKRLAHYAHLPIPDGFDPEDTTlaelalyyqhstRWRCADCV 567
                 45778889***********999999877777778999999999999*****96 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.9    0.0017       3.1      13      53 ..     340     393 ..     330     406 .. 0.58
   2 ?   -0.9   0.2      0.97   1.7e+03      49      55 ..    1558    1567 ..    1536    1578 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0017
  Cytochrome_C7  13 gykCtdCHsklf..eska.k......kk...maemekgkskkaeveslt..........CgaC 53 
                       C++CH++++  + k+ +      ++   + e e+++         t          C +C
     CDO72994.1 340 RSICEKCHTPPAheQLKKlAkkgkkrRRfedDDESEDEE---------TrvnalggwvrCLKC 393
                    457********5243333333332221111122222222.........123355566669888 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.97
  Cytochrome_C7   49 t...CgaCHd 55  
                     +   Cg CH 
     CDO72994.1 1558 QgefCGLCHS 1567
                     0333666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 10985.71
//
Query:       CDO72995.1  [L=1162]
Description: hypothetical protein BN946_scf185007.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-35  122.7   1.2    2.5e-35  121.4   1.2    1.6  1  Sec8_exocyst    Sec8 exocyst complex component specific domai
    7.2e-09   35.3   1.4    1.4e-08   34.4   1.4    1.3  1  Vps54_N         Vacuolar-sorting protein 54, of GARP complex
    0.00012   21.9   0.2    0.00064   19.6   0.0    2.2  2  DUF2451         Protein of unknown function C-terminus (DUF24
  ------ inclusion threshold ------
      0.021   15.6   0.1      0.049   14.4   0.1    1.6  1  FIVAR           FIVAR domain
       0.11   11.6   0.8       0.24   10.4   0.8    1.5  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.18   12.3   0.9        5.8    7.4   0.7    3.2  3  IZUMO           Izumo sperm-egg fusion, Ig domain-associated


Domain annotation for each model (and alignments):
>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   1.2   8.3e-39   2.5e-35       4     141 ..      38     175 ..      37     176 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 8.3e-39
  Sec8_exocyst   4 evlnkikeeWpavls..ddanpvelalsllDdssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKesleea 98 
                   +vl++ikeeW+ v++  +d+npv+lal+llDdss+G  +++++f+ +k+++++aL+  v++h+qaFn +   +  +ls ++  q+++++ +++l+ea
    CDO72995.1  38 AVLDEIKEEWAVVINpdQDFNPVDLALQLLDDSSLG--KDMDSFRRTKDMLSQALKGSVDKHYQAFNAALPHHAALLSHLDATQTQIRDARNALQEA 132
                   5899*********9744789**************99..8889******************************************************* PP

  Sec8_exocyst  99 kkklstkkkeLkelnarsakykevieiLdaieelkkvpdkieq 141
                   k+ l+ k+++L +l+ r+++++e+++iLd+ie+lk+vpd +e+
    CDO72995.1 133 KETLGSKRADLVQLWSRNQTVEEMMRILDQIEHLKSVPDALES 175
                   *****************************************97 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   1.4   4.6e-12   1.4e-08      10     174 ..      54     215 ..      50     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4.6e-12
     Vps54_N  10 deefdpikyeLkklpddelsyesiekevkklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellaks 108
                 d++f+p++  L+ l d+     s+ k ++ +++ +d++s+ l+  + +++++f++ l +   + ++l  + ++++++r+aL+ ak+ l      l+   
  CDO72995.1  54 DQDFNPVDLALQLLDDS-----SLGKDMDSFRRTKDMLSQALKGSVDKHYQAFNAALPHHAALLSHLDATQTQIRDARNALQEAKETLGSKRADLVQLW 147
                 4699***9999988777.....7899************************************************************************* PP

     Vps54_N 109 kkrqllkkllktltaikelrelekrleelleeedysaAiqllletkqlaek..ysqyncvqelssklq 174
                  + q+  +++++l +i +l+++   le+l+ e+   +A  ll+   +l++k    +  +v++l s l 
  CDO72995.1 148 SRNQTVEEMMRILDQIEHLKSVPDALESLILEKRLLQAATLLVRSLKLINKpdMLEIGAVSDLRSYLI 215
                 ********************************************999998722455667888877764 PP

>> DUF2451  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.5   1.5e+03      98     138 ..     150     190 ..      80     198 .. 0.63
   2 !   19.6   0.0   2.2e-07   0.00064      74     218 ..     986    1125 ..     938    1130 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.5
     DUF2451  98 lkevesfskklqelkerlklpeevkkalweaavevvtetLv 138
                 ++ ve++ ++l+++++   +p++++ +++e+ +  ++  Lv
  CDO72995.1 150 NQTVEEMMRILDQIEHLKSVPDALESLILEKRLLQAATLLV 190
                 45566677777776666677777777777666666665555 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.2e-07
     DUF2451   74 eaianvkWdvkevatehssYvdqllkevesfskklqelkerlklpeevkkalweaavevvtetLvegyskvkkcseeGRalMqlDvqqllaklekls 170 
                   a+    + ++  a e+ + v +l++e+ +    l++     +lpe  +k+++e + +++++ L++    ++  ++ G   M+  + +l+++l++++
  CDO72995.1  986 LALRHGIYRIEREAAEPDPHVVDLNTELGNCDASLTS-----TLPETQRKFVFEGMGHLMQHLLISNARFISSANAFGIKKMMRNMLALQQNLKTIT 1077
                  45555667888889999999***************99.....79***********************999*************************** PP

     DUF2451  171 kiksvpnleyveeYIkayylpekeleewikeheeYskkqltgLvncla 218 
                  + +s  ++e+++ Y   + l+ +++   +++++e++  +  +++ + +
  CDO72995.1 1078 DDSSSADFERAKRYYSLFLLSPSDMLDTVRQRQEFTFDEYKAILDLQC 1125
                  *999********************************999998877665 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.6e-05     0.049      25      70 ..      95     136 ..      81     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                 -CCHHHHHHHHHHHHHHHC...TSTTTTCCCHHHHHHHHHHHHHHH CS
       FIVAR  25 dqdkkdaynnalsaAnailnktnnpnatveqVnqalanlnqainaL 70 
                 d++  +a+n+al +  a+l   ++ +at++q+ +a ++l++a+  L
  CDO72995.1  95 DKHY-QAFNAALPHHAALL---SHLDATQTQIRDARNALQEAKETL 136
                 5555.9999999999****...********************9876 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   8.2e-05      0.24      88     163 ..     113     186 ..     102     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.2e-05
       Atg14  88 dklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslssktlesrsslcs 163
                  +l+  + +i+++++ l++ +++l  +r+d  ++q   ++   +++ +++d+i   + + ++l+s++le+r+ ++ 
  CDO72995.1 113 SHLDATQTQIRDARNALQEAKETLGSKRAD--LVQLWSRNQTVEEMMRILDQIEHLKSVPDALESLILEKRLLQAA 186
                 57899999**********************..9*************************************987765 PP

>> IZUMO  Izumo sperm-egg fusion, Ig domain-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.7    0.0019       5.8      17     104 ..     140     225 ..     125     235 .. 0.86
   2 ?    0.4   0.0      0.29   8.8e+02      36      73 ..     459     496 ..     450     502 .. 0.87
   3 ?   -2.6   0.0       2.5   7.4e+03      64     124 ..     984    1044 ..     976    1047 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                 HHTHHHHHSGGHHHHHHHHHHHHHTTT---SGGGGGGSEEEHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHH CS
       IZUMO  17 eedllpselehreklleraealledlsekelaenkflgvvdeetlekvasslkkelkrltdsdlkgelllkeLlwllqkqkkklkeal 104
                 + dl++    +r++ +e +  +l +++++++  ++   ++ e++l ++a+ l ++lk +++ d+ +   ++ L + l +q+++l  +l
  CDO72995.1 140 RADLVQL--WSRNQTVEEMMRILDQIEHLKSVPDALESLILEKRLLQAATLLVRSLKLINKPDMLEIGAVSDLRSYLISQETTLRDIL 225
                 4444432..36899999999*************************************************************9998876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.29
                 HHHHHTTT---SGGGGGGSEEEHHHHHHHHHHHHHHHH CS
       IZUMO  36 ealledlsekelaenkflgvvdeetlekvasslkkelk 73 
                 +al+e++s +  a ++ ++v+d+e l++  + l+++l 
  CDO72995.1 459 RALVEAMSLRLTALESSTKVLDQEILKDFFWTLYSKLI 496
                 67899999999999******************999985 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
                  HHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--SSSEEEEEE CS
       IZUMO   64 vasslkkelkrltdsdlkgelllkeLlwllqkqkkklkealkefqkealcpnkCgllkqtl 124 
                  +  +l++ ++r++ +  + ++ +  L + l +   +l+++l e q++ + +   +l+++ l
  CDO72995.1  984 LDLALRHGIYRIEREAAEPDPHVVDLNTELGNCDASLTSTLPETQRKFVFEGMGHLMQHLL 1044
                  5566777788888888888888889999999999999999999999877777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 7336.79
//
Query:       CDO72996.1  [L=342]
Description: hypothetical protein BN946_scf185007.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.017   15.1   0.7      0.033   14.2   0.7    1.5  1  Complex1_LYR  Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.7   1.8e-06     0.033       2      21 ..       7      26 ..       6      38 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-06
  Complex1_LYR  2 qvLsLYRalLRearkfpdyn 21
                  ++ sLYR++LR+ r++p   
    CDO72996.1  7 AIFSLYRKCLRQIRRLPTVY 26
                  678**************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2327.80
//
Query:       CDO72997.1  [L=372]
Description: Carbohydrate-Binding Module Family 1 / Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-40  138.9   0.0    2.8e-40  138.5   0.0    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
    3.9e-12   45.9   9.9    9.8e-12   44.6   9.9    1.7  1  CBM_1      Fungal cellulose binding domain


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   3.1e-44   2.8e-40      26     278 ..      95     338 ..      69     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 3.1e-44
                 HHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT..-EEEEEEESSTTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTT CS
   Cellulase  26 lidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakeng..lyvildiHseegwltkadgnssedtaeeffkklwtqiAerykkndev 122
                  +++++++g n++R+p     l++++ ++ ++e+ ++++++ v++a + g    vi+d+H++++w  ++d  ++   ++e+f+++wtq+A +y +++e+
  CDO72997.1  95 QFTHFANEGANLFRIPWQ---LMTPTVGGPINETFFSIYDKTVQAALNSGpeTFVIVDLHNYARW--NGDIIAQGGPTNEQFASIWTQLAYKY-GSNER 187
                 578899**********77...455678999*******************944568**********..**************************.***** PP

                 EEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCT........SGSSSSTTEEEEEEEETTTHHHTGCGSH CS
   Cellulase 123 vifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavln........dPndsqdnliysvHfYgpsdfaqtefgk 213
                 +if +mNEPh+  +         +++ + ++ +++a+R++g+ + ++++g sws++    +          dP   +++li++vH+Y +sd ++t+   
  CDO72997.1 188 IIFGIMNEPHDIPSV--------ATWVDSVQFVVNAVRQAGSRNFLLLPGSSWSSAQAFPTEAgpllvkvtDPLGGTNKLIFDVHKYLDSDNSGTHP-- 276
                 ***********5554........5669999*************************7777776645555556776689***************99999.. PP

                 SCTHHHHHHHHHHHHHHHHHHTTS.EEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEES CS
   Cellulase 214 dltdktnlaqrledaakylvekgi.pviigEfGgsnadgdlakeeaekwldylkekgiswiyWsln 278
                    ++t+  + l+++ + l  +g  ++i++E+Gg+n+ +  +++  ++ l+++k+   + +++s++
  CDO72997.1 277 --DCTTDNVDVLQTLVSFLQANGNrQAILSETGGGNTAS--CETLLNNELSFVKSAFPTLAGFSVW 338
                 ..78888899*********999888***********999..9888888888888776666666666 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   9.9   1.1e-15   9.8e-12       1      27 [.      21      47 ..      21      48 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.1e-15
       CBM_1  1 lwgQCGGigWtGpTtCvsgatCtyqNe 27
                +w+QCGGigWtG TtCv+g++Ct++N+
  CDO72997.1 21 EWQQCGGIGWTGETTCVAGTVCTAYND 47
                6*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2562.90
//
Query:       CDO72998.1  [L=527]
Description: hypothetical protein BN946_scf185007.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-26   89.7  26.4    5.7e-08   32.6   1.2    6.7  7  Kelch_4   Galactose oxidase, central domain
    9.5e-25   85.9  20.6    7.9e-09   35.0   0.2    5.2  6  Kelch_1   Kelch motif
    3.3e-24   84.4  12.6    6.9e-06   25.9   0.1    5.7  6  Kelch_5   Kelch motif
    1.8e-23   82.0  17.8    3.1e-08   33.6   0.5    6.8  7  Kelch_6   Kelch motif
    9.1e-20   70.5  24.6    0.00067   19.9   0.3    7.2  7  Kelch_3   Galactose oxidase, central domain
    3.9e-14   52.0  17.8     0.0012   18.8   0.6    6.4  6  Kelch_2   Kelch motif
  ------ inclusion threshold ------
        2.6    8.6  15.8         20    5.8   0.2    5.5  6  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0075        19      11      49 .]     160     199 ..     148     199 .. 0.78
   2 !   13.5   0.7   2.2e-05     0.055       2      49 .]     201     259 ..     200     259 .. 0.76
   3 !   24.8   0.5   6.2e-09   1.6e-05       1      39 [.     260     296 ..     260     298 .. 0.93
   4 ?   -3.9   0.0       5.7   1.5e+04      36      45 ..     336     346 ..     336     351 .. 0.71
   5 !   32.6   1.2   2.2e-11   5.7e-08       2      42 ..     356     394 ..     355     399 .. 0.95
   6 !   18.1   0.0   7.6e-07    0.0019       1      41 [.     405     444 ..     405     454 .. 0.88
   7 !   10.2   0.0   0.00023      0.59       1      25 [.     456     479 ..     456     488 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0075
     Kelch_4  11 pdgtiylfGGrgedgtllndlylldlstntWrrl...gslPs 49 
                     +  fGG  +   + nd+y +++ + + rrl   g++Ps
  CDO72998.1 160 AAAGLTFFGGLDD--RARNDVYSISIDDLSVRRLytsGDSPS 199
                 4467778999999..799****************99999986 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.2e-05
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg........tllndl.ylldlstntWrrl...gslPs 49 
                 R+gh++ s +   ++++GG +  +        t++++  y+l+l+t++W+r+   g++Ps
  CDO72998.1 201 RFGHGSASAG-SVVAIWGGDTFTAsshqlrtrTRYDNGlYFLNLATREWTRIfvdGASPS 259
                 6677777774.5777777777766777777777777744*************99988886 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 6.2e-09
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstn 39 
                 +R gh++t i+  +iy+fGG+   +  ++d++ +dl+t+
  CDO72998.1 260 GRTGHTVTMIGP-RIYVFGGEAYSD-YFDDIWCFDLATR 296
                 599*******75.**********95.**********997 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 5.7
     Kelch_4  36 lstntWrrl.g 45 
                 +s  tW+ l +
  CDO72998.1 336 ISKPTWELLdP 346
                 57889*99843 PP

  == domain 5  score: 32.6 bits;  conditional E-value: 2.2e-11
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWr 42 
                 R ghs+++  ++ +++fGG  ++   +nd++++d+ t+tW+
  CDO72998.1 356 RSGHSCVAY-KDQLIIFGGTDGK-YHYNDIWAFDTRTRTWS 394
                 99*******.79***********.7***************8 PP

  == domain 6  score: 18.1 bits;  conditional E-value: 7.6e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntW 41 
                 pR gh++ +++ + +y+fGGrg dg+  + l ++ +++ +W
  CDO72998.1 405 PREGHGSAVVG-DVVYIFGGRGVDGANIGQLAAFRIPNQRW 444
                 67789999996.9******************9999999999 PP

  == domain 7  score: 10.2 bits;  conditional E-value: 0.00023
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg 25 
                 pR gh++++++  +iy+ GG +ed+
  CDO72998.1 456 PRSGHGMVAVG-SKIYVLGGVSEDD 479
                 9*********7.7*******98885 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.3   3.4e+03      17      33 ..     167     182 ..     167     184 .. 0.84
   2 ?   -2.5   0.0       1.6   4.1e+03      31      41 ..     240     250 ..     217     251 .. 0.76
   3 !   26.1   0.1   1.9e-09   4.8e-06       2      36 ..     261     295 ..     260     297 .. 0.95
   4 !   35.0   0.2   3.1e-12   7.9e-09       1      41 [.     355     395 ..     355     396 .. 0.98
   5 !   13.2   2.1     2e-05     0.052       1      20 [.     405     424 ..     405     432 .. 0.92
   6 !   23.0   0.1   1.7e-08   4.3e-05       1      22 [.     456     477 ..     456     495 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
                 EEEBCSSSBEEEEEEEE CS
     Kelch_1  17 iGGsdggnalssvevyD 33 
                 +GG d+ +a ++v+ ++
  CDO72998.1 167 FGGLDD-RARNDVYSIS 182
                 799999.9999999775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                 EEETTTTEEEE CS
     Kelch_1  31 vyDpetntWre 41 
                  +++ t +W++
  CDO72998.1 240 FLNLATREWTR 250
                 57889999997 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 1.9e-09
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTT CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpet 36 
                 r+g++++ +g +iYv+GG   + + ++++++D+ t
  CDO72998.1 261 RTGHTVTMIGPRIYVFGGEAYSDYFDDIWCFDLAT 295
                 99******************************987 PP

  == domain 4  score: 35.0 bits;  conditional E-value: 3.1e-12
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpetntWre 41 
                 +r+g+++v+  +++ ++GG dg    ++++++D++t tW+e
  CDO72998.1 355 RRSGHSCVAYKDQLIIFGGTDGKYHYNDIWAFDTRTRTWSE 395
                 7**************************************97 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 2e-05
                 BBBSEEEEEETTEEEEEEEB CS
     Kelch_1   1 aragagavvvggkiYviGGs 20 
                 +r g+g++vvg+ +Y++GG+
  CDO72998.1 405 PREGHGSAVVGDVVYIFGGR 424
                 6889***************7 PP

  == domain 6  score: 23.0 bits;  conditional E-value: 1.7e-08
                 BBBSEEEEEETTEEEEEEEBCS CS
     Kelch_1   1 aragagavvvggkiYviGGsdg 22 
                 +r+g+g+v+vg kiYv+GG ++
  CDO72998.1 456 PRSGHGMVAVGSKIYVLGGVSE 477
                 7******************998 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   5.3e+03      19      35 ..     166     179 ..     166     182 .. 0.62
   2 ?   -0.1   0.0      0.39     1e+03       2      39 ..     198     243 ..     197     245 .. 0.62
   3 !   25.9   0.1   2.7e-09   6.9e-06       2      41 ..     258     295 ..     257     296 .. 0.95
   4 !   20.9   0.0     1e-07   0.00027       2      41 ..     353     390 ..     352     391 .. 0.90
   5 !   18.9   0.4   4.3e-07    0.0011       1      24 [.     402     425 ..     402     432 .. 0.92
   6 !   22.4   0.0   3.5e-08   8.9e-05       2      27 ..     454     477 ..     453     495 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
     Kelch_5  19 vyGGkvgrdgsvsddvy 35 
                 ++GG +     + +dvy
  CDO72998.1 166 FFGGLDD---RARNDVY 179
                 6999995...3333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.39
     Kelch_5   2 PppRaghcavtvsekiYvyGGkv.....g...rdgsvsddvyvLdl 39 
                 P+ R+gh ++ +++ + ++GG +     +   ++  + + +y L+l
  CDO72998.1 198 PSTRFGHGSASAGSVVAIWGGDTftassHqlrTRTRYDNGLYFLNL 243
                 6778888888777777777775554443134566666677777766 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 2.7e-09
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P++R+gh + + +  iYv+GG  +  ++++dd++ +dl +
  CDO72998.1 258 PSGRTGHTVTMIGPRIYVFGGEAY--SDYFDDIWCFDLAT 295
                 99*********************7..********999976 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 1e-07
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsv.sddvyvLdlps 41 
                 P+ R+gh+ v+++++++++GG +   g++ ++d++ +d+++
  CDO72998.1 353 PSRRSGHSCVAYKDQLIIFGGTD---GKYhYNDIWAFDTRT 390
                 888********************...4555******99876 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 4.3e-07
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkv 24 
                 iP+pR gh +++v++ +Y++GG++
  CDO72998.1 402 IPAPREGHGSAVVGDVVYIFGGRG 425
                 7*********************87 PP

  == domain 6  score: 22.4 bits;  conditional E-value: 3.5e-08
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrd 27 
                 P+pR+gh +v+v++kiYv GG++  +
  CDO72998.1 454 PAPRSGHGMVAVGSKIYVLGGVS--E 477
                 9*********************9..3 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.42   1.1e+03      17      40 ..     167     188 ..     156     191 .. 0.84
   2 ?    5.2   0.1     0.011        28       2      43 ..     201     251 ..     200     253 .. 0.85
   3 !   23.7   0.1   1.6e-08   4.2e-05       2      38 ..     261     296 ..     261     298 .. 0.95
   4 ?   -1.8   0.0       1.7   4.4e+03      36      48 ..     337     349 ..     321     352 .. 0.72
   5 !   33.6   0.5   1.2e-11   3.1e-08       2      42 ..     356     395 ..     355     406 .. 0.91
   6 !   10.5   0.2   0.00023      0.59       2      40 ..     406     444 ..     404     451 .. 0.72
   7 !   15.7   0.0   5.4e-06     0.014       1      22 [.     456     477 ..     456     493 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.42
     Kelch_6  17 fGGytdsspylnkvwvydpetksW 40 
                 fGG++d   + n+v+ +++++ s 
  CDO72998.1 167 FGGLDD--RARNDVYSISIDDLSV 188
                 899998..7999999999988765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
     Kelch_6   2 raghslvsvggkiYifGGytds.........spylnkvwvydpetksWeql 43 
                 r gh ++s+g+ + i+GG t           + y n ++++++ t+ W+++
  CDO72998.1 201 RFGHGSASAGSVVAIWGGDTFTasshqlrtrTRYDNGLYFLNLATREWTRI 251
                 5678888888888888999888888889999999999***********976 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 1.6e-08
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetk 38 
                 r+gh+++ +g +iY+fGG    s y++++w++d+ t+
  CDO72998.1 261 RTGHTVTMIGPRIYVFGGEAY-SDYFDDIWCFDLATR 296
                 799****************99.9**********9997 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.7
     Kelch_6  36 etksWeqlpplpv 48 
                 +  +We l p+++
  CDO72998.1 337 SKPTWELLDPPKG 349
                 4459*99999884 PP

  == domain 5  score: 33.6 bits;  conditional E-value: 1.2e-11
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWeq 42 
                 r ghs+v++ +++ ifGG ++   ++n++w +d +t++W++
  CDO72998.1 356 RSGHSCVAYKDQLIIFGGTDG-KYHYNDIWAFDTRTRTWSE 395
                 889******************.9****************97 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00023
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksW 40 
                 r gh +++vg+ +YifGG++ ++    ++  +++ + +W
  CDO72998.1 406 REGHGSAVVGDVVYIFGGRGVDGANIGQLAAFRIPNQRW 444
                 679****************98744444444555555555 PP

  == domain 7  score: 15.7 bits;  conditional E-value: 5.4e-06
     Kelch_6   1 praghslvsvggkiYifGGytd 22 
                 pr gh +v+vg+kiY++GG + 
  CDO72998.1 456 PRSGHGMVAVGSKIYVLGGVSE 477
                 699****************876 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0005       1.3       6      47 ..     166     207 ..     164     209 .. 0.87
   2 !   19.9   0.3   2.6e-07   0.00067      13      47 ..     230     267 ..     210     269 .. 0.83
   3 !   11.7   0.1   9.9e-05      0.25       1      44 [.     270     311 ..     270     313 .. 0.91
   4 !   10.0   0.1   0.00034      0.86      23      49 .]     333     364 ..     325     364 .. 0.79
   5 !   18.5   0.1   7.3e-07    0.0019       2      48 ..     366     413 ..     365     414 .. 0.91
   6 !   14.9   0.3   9.3e-06     0.024       1      48 [.     415     464 ..     415     465 .. 0.80
   7 ?   -2.3   0.0       2.3     6e+03       1      12 [.     466     477 ..     466     497 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0005
     Kelch_3   6 ifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaat 47 
                 +fGGl+     + ndvy++++d  +++++   +++p+ R gh ++
  CDO72998.1 166 FFGGLD---DRARNDVYSISIDDLSVRRLytsGDSPSTRFGHGSA 207
                 599999...4566*********88***88888**********987 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.6e-07
     Kelch_3  13 dgqdrlndvyvydldtntWaei...aslppaRaghaat 47 
                 +++ ++n +y ++l+t +W++i   + +p++R+gh++t
  CDO72998.1 230 TRTRYDNGLYFLNLATREWTRIfvdGASPSGRTGHTVT 267
                 778888******************************98 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 9.9e-05
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaeiaslppaRagh 44 
                 g r+y+fGG+     d+  d + +dl+t  +  +a++ ++R++ 
  CDO72998.1 270 GPRIYVFGGEA--YSDYFDDIWCFDLATRAYPPSAQSHSPRRYY 311
                 568********..9**************9999999999999975 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00034
     Kelch_3  23 vydldtntWaei.....aslppaRaghaatai 49 
                    ++++tW+ +     a+ p+ R+gh+++a+
  CDO72998.1 333 CTVISKPTWELLdppkgAPRPSRRSGHSCVAY 364
                 5557899***8877777888********9985 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 7.3e-07
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 d l ifGG +  g  ++nd +++d+ t tW e    +  p +R gh +++
  CDO72998.1 366 DQLIIFGGTD--GKYHYNDIWAFDTRTRTWSEFwcsGYIPAPREGHGSAV 413
                 7899******..*******************9998888999999999876 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 9.3e-06
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtn...tWaeiaslppaRaghaata 48 
                 gd +yifGG+g d + + +++ ++ + +    t+++ ++ p +R+gh ++a
  CDO72998.1 415 GDVVYIFGGRGVD-GANIGQLAAFRIPNQrwyTFQNMGPEPAPRSGHGMVA 464
                 789********86.55667777777744444799999***********997 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 2.3
     Kelch_3   1 gdrlyifGGlgd 12 
                 g ++y+ GG   
  CDO72998.1 466 GSKIYVLGGVSE 477
                 568999999655 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.6      0.31     8e+02       2      19 ..     201     218 ..     200     251 .. 0.55
   2 !   15.4   0.1   5.3e-06     0.014       2      39 ..     261     295 ..     260     297 .. 0.92
   3 ?   -2.1   0.0       1.7   4.4e+03      36      48 ..     335     347 ..     327     348 .. 0.74
   4 !   18.8   0.6   4.5e-07    0.0012       1      44 [.     355     395 ..     355     398 .. 0.94
   5 !   10.1   0.1   0.00024      0.62       2      20 ..     406     424 ..     405     446 .. 0.82
   6 !   14.5   0.0   9.9e-06     0.025       1      21 [.     456     477 ..     456     495 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.31
     Kelch_2   2 rgghsssvpggkiyvvGG 19 
                 r+gh s++ g+ + ++GG
  CDO72998.1 201 RFGHGSASAGSVVAIWGG 218
                 566666666666666666 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.3e-06
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlek 39 
                 r gh+++++g +iyv+GG      +++++d++++dl +
  CDO72998.1 261 RTGHTVTMIGPRIYVFGGE---AYSDYFDDIWCFDLAT 295
                 89*****************...9999*********977 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
     Kelch_2  36 dlekhvWeevtpl 48 
                   +k +We++ p+
  CDO72998.1 335 VISKPTWELLDPP 347
                 57899***99876 PP

  == domain 4  score: 18.8 bits;  conditional E-value: 4.5e-07
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                 rr+ghs++   ++++++GG    ++    +d++ +d+++++W+e
  CDO72998.1 355 RRSGHSCVAYKDQLIIFGGT---DGKYHYNDIWAFDTRTRTWSE 395
                 79******************...8888889************86 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00024
     Kelch_2   2 rgghsssvpggkiyvvGGa 20 
                 r gh s+v+g+ +y++GG+
  CDO72998.1 406 REGHGSAVVGDVVYIFGGR 424
                 6699**************9 PP

  == domain 6  score: 14.5 bits;  conditional E-value: 9.9e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGa.h 21 
                 +r+gh ++ +g+kiyv GG+ +
  CDO72998.1 456 PRSGHGMVAVGSKIYVLGGVsE 477
                 79*****************932 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.5   6.3e+03      17      32 ..     158     173 ..     149     182 .. 0.70
   2 ?    5.2   0.2     0.013        32      12      40 .]     208     245 ..     200     245 .. 0.84
   3 ?   -0.6   0.1      0.83   2.1e+03      20      40 .]     269     295 ..     253     295 .. 0.70
   4 ?    3.8   0.0     0.033        84      13      32 ..     358     377 ..     338     390 .. 0.71
   5 ?    5.8   0.2    0.0077        20       4      30 ..     383     427 ..     382     439 .. 0.77
   6 ?    0.7   0.1      0.32   8.1e+02      12      30 ..     457     481 ..     443     483 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
       PQQ_3  17 pavdgglvyvgtgdGt 32 
                  +++ gl ++g+ d +
  CDO72998.1 158 GVAAAGLTFFGGLDDR 173
                 3566677777777554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
       PQQ_3  12 pvnsspavdgglvyvgtg.........dGtlyAlDaet 40 
                  ++s +a++gg  +++++         d++ly l+ +t
  CDO72998.1 208 SAGSVVAIWGGDTFTASShqlrtrtryDNGLYFLNLAT 245
                 455667*********9999**************99887 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.83
       PQQ_3  20 dgglvyvgtg......dGtlyAlDaet 40 
                  g ++yv +g         + ++D +t
  CDO72998.1 269 IGPRIYVFGGeaysdyFDDIWCFDLAT 295
                 466677777667777788999999887 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.033
       PQQ_3  13 vnsspavdgglvyvgtgdGt 32 
                 ++s +a+ + l+ +g++dG+
  CDO72998.1 358 GHSCVAYKDQLIIFGGTDGK 377
                 345569***********887 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0077
       PQQ_3   4 lWsvqlpgpvnssp...............avdgglvyvgtg...d 30 
                 +W++++  +++s                 av+g++vy+ +g   d
  CDO72998.1 383 IWAFDTRTRTWSEFwcsgyipapreghgsAVVGDVVYIFGGrgvD 427
                 58887777777777777788888999999*********9995552 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.32
       PQQ_3  12 pvnsspavdgglvyvgtg......d 30 
                 + + +++++g ++yv +g      d
  CDO72998.1 457 RSGHGMVAVGSKIYVLGGvseddlD 481
                 4556889********9886665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3810.04
//
Query:       CDO72999.1  [L=952]
Description: hypothetical protein BN946_scf185007.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-39  133.7   0.0    2.8e-37  128.7   0.0    2.1  2  Esterase       Putative esterase
    8.4e-09   35.5   0.1    7.4e-07   29.1   0.0    2.4  2  PGAP1          PGAP1-like protein
    5.2e-05   23.0   0.1     0.0049   16.5   0.1    2.8  2  Abhydrolase_1  alpha/beta hydrolase fold
    6.6e-05   22.3   0.0      0.027   13.7   0.0    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
     0.0017   18.3   0.0     0.0026   17.7   0.0    1.3  1  Palm_thioest   Palmitoyl protein thioesterase
     0.0018   17.6   0.0      0.054   12.8   0.0    2.3  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
     0.0023   18.6  10.6     0.0032   18.1   0.2    3.0  2  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.022   14.3   0.1       0.15   11.6   0.0    2.0  2  DUF676         Putative serine esterase (DUF676)
      0.044   13.7   0.0        2.9    7.7   0.0    2.4  2  Lipase_3       Lipase (class 3)
      0.093   12.8   0.1        1.4    8.9   0.0    2.2  2  Thioesterase   Thioesterase domain
       0.17   11.0   0.0       0.93    8.6   0.0    1.9  2  LCAT           Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.048        78     112     138 ..     339     366 ..     331     464 .. 0.83
   2 !  128.7   0.0   1.7e-40   2.8e-37       5     235 ..     687     942 ..     682     950 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.048
                 EECCC.EEEEEETHHHHHHHHHHHCSTT CS
    Esterase 112 tapdg.ravaGqSmGGlgALilalkhpd 138
                 t+p +   ++G+SmGG    +l ++  d
  CDO72999.1 339 TYPGRsVHLIGHSMGGIDCRYLTTHLTD 366
                 555555689*******876666666555 PP

  == domain 2  score: 128.7 bits;  conditional E-value: 1.7e-40
                 TEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTT.TSBTTSB..B.TTEEETTCCCCCCHC..HHH CS
    Esterase   5 greikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessf.ysdwdlg..arfyenategpgaeaye..tfl 98 
                 g + +++++LP + s+++k p++ +l Glt++++n+  k  +   a++++ia  +++++prg   +   ++wd+g  a+fy+nat  +++++y   t +
  CDO72999.1 687 GLDANFNLFLPANASESNKVPLLTYLAGLTCTEDNGAQKGHFLGPASKEGIAILFPDTSPRGAGIEGeTDSWDFGvgAGFYLNATHPKWSKHYNmlTHV 785
                 56889********************************999999999****************99888799***************************** PP

                 HTHHHHHHHH.HCSEECCCEEEEEETHHHHHHHHHHHC....STTTCCEEEEES--S-CCHCHHHC..........TTCCHHHCC-CCCCHCHHCHTTS CS
    Esterase  99 tqeLlpllda.nfrtapdgravaGqSmGGlgALilalk....hpdrFgsvssfSpivnpsnamWgq..........eekeawqendpvllakelsaslk 182
                 t eL+ +++a  ++++ ++++++G+SmGG+gAL+l+l+      +++ svs+f+pi np+n++Wgq          +e+++  ++d++ l+k+    ++
  CDO72999.1 786 TLELPEVIQAaGLPIDLTRQSIFGHSMGGHGALTLYLNsilnGVKQYRSVSAFAPISNPVNCPWGQkafsgylqggVEEAR-DKYDATELIKK--LGKE 881
                 ********96268999999*****************996665689**************************9999744333.68999999976..6778 PP

                 EEEEEEEECTTBCCCHT.SCHHHHHHHHHHHCCHHH.HCCCCCCTT-SCCCC......--S CS
    Esterase 183 alriyldvGtseddlge.qlsveilevlarnrelke.qlaargvegedheyd......Ggh 235
                  + i++d Gt ++++++ ql +e++  +ar +   e q++ r++eg+dh+y+      ++h
  CDO72999.1 882 PVHILVDYGTADNFYKQgQLLPENFLKAARDSGYDEvQVRVRSQEGYDHSYYfictfgADH 942
                 899*************999999998888887776654899************555553333 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   4.5e-10   7.4e-07      88     137 ..     340     388 ..     313     397 .. 0.87
   2 ?    3.8   0.0     0.026        42      95     113 ..     807     824 ..     799     859 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.5e-10
       PGAP1  88 keptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalpplsfd 137
                  + +sv liGHSmGGi  r ++t+ + ++ +v +i t++sPh  +    d
  CDO72999.1 340 YPGRSVHLIGHSMGGIDCRYLTTHLTDRPFKVLSITTISSPHRGSSF-AD 388
                 4779**************************************98876.45 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.026
       PGAP1  95 liGHSmGGivaraaltlkn 113
                 + GHSmGG  a ++l l++
  CDO72999.1 807 IFGHSMGGHGA-LTLYLNS 824
                 78******988.4444444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     3e-06    0.0049       1     107 [.     272     380 ..     272     394 .. 0.78
   2 ?    3.1   0.0     0.039        64      59      93 ..     789     823 ..     767     846 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
                    SEEEEE-STTT........CGGG.....GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHH CS
  Abhydrolase_1   1 pvlvilhGlpg........ssdv.....waerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmG 83 
                    ++lv++hGl+g        s        w++  + +aL+ +g +v+++  r ++ Ssp  +               ++i + ++ ++++l+GhSmG
     CDO72999.1 272 NPLVFCHGLLGfdtvtlgpSIAPlqvthWRG--IRDALEANGVEVLIT--RVPATSSPIER----------AKVLCEKISETYPGRSVHLIGHSMG 353
                    6899999999999887766333366676999..999999989888886..55567777776..........344555******************* PP

                    HHHHHHHHHHH...GGGEEEEEEESEC CS
  Abhydrolase_1  84 Gmialayaaey...perVkalvllgai 107
                    G  ++++       p +V ++++++++
     CDO72999.1 354 GIDCRYLTTHLtdrPFKVLSITTISSP 380
                    *99999999889999999999999992 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.039
                    HHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1  59 vaddldrildalgddkltlvGhSmGGmialayaae 93 
                    + ++++++  + ++ +  + GhSmGG  al++++ 
     CDO72999.1 789 LPEVIQAAGLPIDLTRQSIFGHSMGGHGALTLYLN 823
                    55666666666666777789*******99998865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.7e-05     0.027      53      88 ..     320     355 ..     314     396 .. 0.81
   2 !    6.0   0.0    0.0037         6      78      94 ..     805     821 ..     777     858 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
  Hydrolase_4  53 psfddyvdDlaafvekvkeehpelplfllGhSmGGl 88 
                  p +++ ++ ++ ++ek+ e++p++ + l+GhSmGG+
   CDO72999.1 320 PATSSPIERAKVLCEKISETYPGRSVHLIGHSMGGI 355
                  56666667788999********************96 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0037
  Hydrolase_4  78 lfllGhSmGGliallyl 94 
                    ++GhSmGG  al++ 
   CDO72999.1 805 QSIFGHSMGGHGALTLY 821
                  569********999876 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.6e-06    0.0026      50     108 ..     328     386 ..     273     435 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.6e-06
  Palm_thioest  50 nlndqveavckk...lelangfhaiGfSQGglflRaliercddkkn.vrnlislggpqaGvfg 108
                        ++  c+k   +   + +h+iG+S Gg+ +R l  + +d+   v ++ ++++p+ G + 
    CDO72999.1 328 R----AKVLCEKiseTYPGRSVHLIGHSMGGIDCRYLTTHLTDRPFkVLSITTISSPHRGSSF 386
                   3....3335555555346789*******************9877669*************876 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.3e-05     0.054      93     146 ..     333     384 ..     324     399 .. 0.85
   2 ?    2.1   0.0      0.06        98     106     123 ..     806     824 ..     799     893 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.3e-05
      DUF915  93 lseLkkkYnikkfnavGhSmGglaltsYleeyaddkslPqlkklvtiggpfngi 146
                  +++ ++Y    + ++GhSmGg+++ +Yl +   d+ + ++ ++ ti +p  g+
  CDO72999.1 333 CEKISETYPGRSVHLIGHSMGGIDC-RYLTTHLTDRPF-KVLSITTISSPHRGS 384
                 5788999999*************96.799999999999.999999999988776 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.06
      DUF915 106 navGhSmGgla.ltsYlee 123
                  + GhSmGg + lt Yl +
  CDO72999.1 806 SIFGHSMGGHGaLTLYLNS 824
                 578******8615677765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2     2e-06    0.0032       1     139 [.     274     435 ..     274     558 .. 0.53
   2 !    7.2   0.0    0.0041       6.7      62     126 ..     798     871 ..     727     945 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-06
                    EEEE--.............GC.....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHH.... CS
  Abhydrolase_6   1 vlllHG.............agssassWlvapL.aallaagvhvlapDlpGhGrsdpppldledladl.aalldelaagggpvvlvGHSlGGa.... 77 
                    ++++HG             a++  ++W+   +  al a gv+vl++  p +  s       e++  l + + +     g+ v+l+GHS+GG+    
     CDO72999.1 274 LVFCHGllgfdtvtlgpsiAPLQVTHWR--GIrDALEANGVEVLITRVPAT--S----SPIERAKVLcEKISETY--PGRSVHLIGHSMGGIdcry 359
                    6888885333333322222111122233..444444444466666666666..3....44444344434444444..58899*********97776 PP

                    HHHHHHHCC....EEEEES-........----TTT.....S----TTHHHHHHTT-C.......CCCHCCHS-HSCCCCHHH CS
  Abhydrolase_6  78 lalaaapla..lvvgvlldppp......talpagl.....laaalelllallallrl.......lawlsreplprlfladed 139
                    l +++ + +  +++   +++p                   ++ +++ +l ll ll+        +++l+ e   r+f ++++
     CDO72999.1 360 LTTHLTDRPfkVLSITTISSPHrgssfaD-----HfletiGRERMPSVLSLLELLPNgggdgkaFEFLTIE-NMREFNEQTP 435
                    66664444464333355555333332221.....0222333333333333333333333333223333222.1113333333 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0041
                    ....TTSEEEEEETCHHHHHHHHHHCC............EE.EEES-..----TTTS----TTHHHHHHTT-CCCCHC CS
  Abhydrolase_6  62 a..gggpvvlvGHSlGGalalaaapla..........lvvg.vlldppptalpagllaaalelllallallrllawls 126
                       +  +  ++GHS+GG+ al    l             ++  + +p +  +  ++++ a++ +l+ +  ++++ +++
     CDO72999.1 798 LpiDLTRQSIFGHSMGGHGALT---LYlnsilngvkqY-RSvSAFAPISNPVNCPWGQKAFSGYLQGGVEEARDKYDA 871
                    1445556689******985555...2233445555532.223555553333333334444444444444444455554 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.1e-05      0.15      81     138 ..     345     393 ..     327     409 .. 0.79
   2 ?   -0.4   0.0      0.41   6.6e+02      76      90 ..     801     814 ..     781     820 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
      DUF676  81 iSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPhLGvlysskslin 138
                 + ++ghS+Gg+  r+  + l +++  +       ++   +t++sPh G+ +  ++l  
  CDO72999.1 345 VHLIGHSMGGIDCRYLTTHLTDRP--F-------KVLSITTISSPHRGSSFADHFLET 393
                 558***************999775..3.......588899*********999888555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.41
      DUF676  76 dknkkiSfvghSlGg 90 
                 d  ++ S+ ghS+Gg
  CDO72999.1 801 DL-TRQSIFGHSMGG 814
                 44.588********9 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0018       2.9      49     117 ..     327     392 ..     296     410 .. 0.75
   2 ?    3.2   0.0     0.044        72      65      98 ..     803     836 ..     759     847 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS---EEEEEES----B-HHHHHHHH CS
    Lipase_3  49 eqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenekkkvtvvtfGqPrvgnkefaklvd 117
                 e  +   +++ e yp  s+ + GHS+Gg     ++++l  +     k +++ t+++P  g++   ++++
  CDO72999.1 327 ERAKVLCEKISETYPGRSVHLIGHSMGGIDCRYLTTHLTDRPF---KVLSITTISSPHRGSSFADHFLE 392
                 5555666789999***************888888888888773...46777778888777766555555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.044
                 EEEEEEEETHHHHHHHHHHHHHHHTT-SS---EE CS
    Lipase_3  65 ysivvtGHSLGgalAlLaaldlvengenekkkvt 98 
                 ++  + GHS+Gg  Al + l+ + ng ++ + v+
  CDO72999.1 803 TRQSIFGHSMGGHGALTLYLNSILNGVKQYRSVS 836
                 566788******9998877777777766555444 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00088       1.4      52     105 ..     329     382 ..     306     402 .. 0.87
   2 ?    1.2   0.1       0.2   3.3e+02      70      78 ..     807     815 ..     801     820 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00088
                   HHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCC CS
  Thioesterase  52 aaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssap 105
                   a  ++e + ++ p   ++l+GhS+Gg+    ++++L ++  +v s+  i s+++
    CDO72999.1 329 AKVLCEKISETYPGRSVHLIGHSMGGIDCRYLTTHLTDRPFKVLSITTISSPHR 382
                   5678899999999999**********9888888888888888888888888776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.2
                   EEEETHHHH CS
  Thioesterase  70 lfGhSlGgl 78 
                   +fGhS+Gg 
    CDO72999.1 807 IFGHSMGGH 815
                   8******95 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00057      0.93     111     165 ..     332     384 ..     323     391 .. 0.75
   2 ?   -0.6   0.0      0.34   5.6e+02     124     138 ..     806     820 ..     792     849 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00057
        LCAT 111 lieealk.lsgkkvvliaHSmGnllvlyflkwveaeaWvdqhikafislgapllGs 165
                 l e++ +   g+ v li+HSmG+  ++y   ++ +      ++ ++  +++p  Gs
  CDO72999.1 332 LCEKISEtYPGRSVHLIGHSMGGIDCRYLTTHLTDRP---FKVLSITTISSPHRGS 384
                 455555535578899*************988877776...5677777777777766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.34
        LCAT 124 vliaHSmGnllvlyf 138
                  +++HSmG++  l  
  CDO72999.1 806 SIFGHSMGGHGALTL 820
                 689*****9754433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 7152.60
//
Query:       CDO73000.1  [L=640]
Description: hypothetical protein BN946_scf185007.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-16   57.9   0.1    5.4e-15   55.5   0.0    2.2  2  MMR_HSR1     50S ribosome-binding GTPase
    2.3e-07   30.9   0.0    0.00092   19.2   0.1    2.4  2  RsgA_GTPase  RsgA GTPase
      2e-05   24.2   0.0    3.7e-05   23.3   0.0    1.4  1  FeoB_N       Ferrous iron transport protein B
      0.006   15.9   0.0      0.011   15.0   0.0    1.4  1  AIG1         AIG1 family
  ------ inclusion threshold ------
      0.016   15.3   0.1      0.047   13.8   0.1    1.8  1  Dynamin_N    Dynamin family
        9.7    7.2  10.1         10    7.1   0.1    3.4  3  AIM3         Altered inheritance of mitochondria protein 3


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.64   1.9e+03      30      79 ..     115     180 ..      64     187 .. 0.65
   2 !   55.5   0.0   1.8e-18   5.4e-15       2      57 ..     331     384 ..     330     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.64
                 TTSSSSEEEEEEEETTEE................EEEEECGGCSS.HHHHHHHHHHHHHHHHCTSEE CS
    MMR_HSR1  30 pgtTrdinegrvklkgke................ielvDtpGlie.gaseekglgkaflaleeadli 79 
                 p  T+ +++++++ ++k+                 ++ D+ G  e +a ++kg ++++l +++adl+
  CDO73000.1 115 PPWTKGMTTAQLDRQEKDaflewrrglaecedleAYVQDVEG-AEgEAGTGKGKRRSLLLINKADLL 180
                 444555555554422111333333333333333367777777.554666777777777777777765 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 1.8e-18
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGli 57 
                 v++vG+pNvGKS+ inal+ge k+ vs++pg+T++ ++++++   ++++l+D+pGl+
  CDO73000.1 331 VGLVGYPNVGKSSTINALIGEkKVSVSSTPGKTKHFQTIHLS---SSLVLCDCPGLV 384
                 89******************9789*****************8...79********85 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00035         1      49      95 ..     170     215 ..     164     222 .. 0.88
   2 !   19.2   0.1   3.1e-07   0.00092     101     162 ..     330     384 ..     308     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00035
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHH CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelke 95 
                   ++++nK+Dll+ ++  + +++ + + g++  + sa + ++++e ++
   CDO73000.1 170 SLLLINKADLLTARQ-RKMWADYFDSQGVQYAFFSAANAAAIQEARR 215
                  5799***********.9********************9998887665 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.1e-07
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfr 162
                  ++ lvG   vGKS+ inal++e     ++vs ++  Gk  T++ + ++l+++ +l+D PG+ 
   CDO73000.1 330 VVGLVGYPNVGKSSTINALIGE-----KKVSVSSTPGK--TKHFQTIHLSSSLVLCDCPGLV 384
                  455889999*************.....56666667777..999*****************86 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.2e-08   3.7e-05       3      57 ..     331     383 ..     329     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.2e-08
                 EEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   3 valvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 v lvG pnvGk++ +nal g k  +v+  pG+t   ++ +l+   +++ ++D PG 
  CDO73000.1 331 VGLVGYPNVGKSSTINALIGEKkVSVSSTPGKTKHFQTIHLS---SSLVLCDCPGL 383
                 789****************976379********888888888...9999*****96 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.7e-06     0.011       5      60 ..     333     384 ..     329     417 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-06
                 EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCC CS
        AIG1   5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglf 60 
                 lvG   +GkS+T+N+++g+k  + + s+ + tk++q   +     +++  D Pgl+
  CDO73000.1 333 LVGYPNVGKSSTINALIGEKKVSVS-STPGKTKHFQ---TIHLSSSLVLCDCPGLV 384
                 89999**************987766.3445555554...45556778888888884 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.6e-05     0.047       1      41 [.     331     372 ..     331     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS.---S-EEEEEC CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnp.tTrrplelqlg 41 
                 + +vG  + GKSS +naL+ge+   ++++p  T  + +++l+
  CDO73000.1 331 VGLVGYPNVGKSSTINALIGEKKVSVSSTPgKTKHFQTIHLS 372
                 6789999*************9866666654167777777765 PP

>> AIM3  Altered inheritance of mitochondria protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4       1.4   4.2e+03      47      48 ..     257     264 ..     213     288 .. 0.57
   2 ?    7.1   0.1    0.0034        10      54      85 ..     510     541 ..     470     544 .. 0.82
   3 ?    5.0   0.5     0.016        47      27      46 ..     617     635 ..     601     640 .] 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
        AIM3  47 k......d 48 
                 +      +
  CDO73000.1 257 DdsvatpE 264
                 01222211 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0034
        AIM3  54 reededydtstsleslrdprsFppPPlkpgqa 85 
                  ++   ++++++ + ++++++F pPP  pg+a
  CDO73000.1 510 LQRAMGKKRAPTTRVTKNADTFVPPPNDPGSA 541
                 4555566788889999***********99987 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.016
        AIM3  27 yqagKkhykkskekreerdg 46 
                  qagKkh+kk k+ +++  g
  CDO73000.1 617 IQAGKKHHKKMKRVKQRS-G 635
                 69********99887764.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 4008.32
//
Query:       CDO73001.1  [L=348]
Description: hypothetical protein BN946_scf185007.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-14   53.3   0.0    5.8e-14   52.2   0.0    1.8  1  EF_TS     Elongation factor TS
    0.00041   20.1   0.1    0.00072   19.3   0.1    1.4  1  UBA_4     UBA-like domain
     0.0051   16.7   0.3      0.011   15.6   0.3    1.6  1  UBA       UBA/TS-N domain


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   9.6e-18   5.8e-14       1     138 [.     109     266 ..     109     343 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 9.6e-18
       EF_TS   1 avivevnsETDFVAknekFqelvkkvaeaal.eekakdle....................ellalkled..etveealkekiakigEkielrrfaklea 76 
                 a++ve+n+ETDFVA+ne F +l +++a++a+  +++++ +                    + ++++      +v +a++++++k+gEk++lrr+  +  
  CDO73001.1 109 AAMVELNCETDFVARNELFGKLLSDIAHTAAyLAEPTHGDkfiqsiscdalseaplldhlNPQSSS--AspVSVGDAVRDLVTKVGEKVTLRRAVSVAR 205
                 79*************************999874455555556677778888888888644333343..2559**********************99998 PP

       EF_TS  77 ekevvasYiHgngrigvlvalegksdea.lkelakqiAmhiaAmnPqylsedevdaevlekek 138
                  + + a+  H + r+   v+ + +  ++ +k ++  +A++ + + P+ +s++e+++++ + e+
  CDO73001.1 206 -DPFPAQQRHLGLRVFPFVHGSVHVPTNgIKGTLALLALK-SHNLPSLVSSEEFQQKLAALER 266
                 .555577777777777777777776665666666666666.3455777777777776666665 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.2e-07   0.00072       3      33 ..      31      62 ..      30      63 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-07
       UBA_4  3 liaqFqaiT.GadeekArqlLeannWdLerAi 33
                lia++  iT G++  kAr+ L a+n+dL++A+
  CDO73001.1 31 LIAELRKITeGVSLSKAREALAASNNDLQAAL 62
                89*****************************7 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.9e-06     0.011      18      37 .]      46      65 ..      43      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-06
                HHHHHHHHTTTSHHHHHHHH CS
         UBA 18 evveALratgnNeErAveyL 37
                 ++eAL a++n++++A+ +L
  CDO73001.1 46 KAREALAASNNDLQAALKWL 65
                69*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2247.05
//
Query:       CDO73002.1  [L=482]
Description: hypothetical protein BN946_scf185007.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-16   60.5  36.7    1.9e-10   40.4  20.5    3.0  3  Taxilin    Myosin-like coiled-coil protein
      1e-07   31.6   0.5      0.007   16.2   0.0    3.1  3  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
    0.00056   19.6   0.1      0.057   13.2   0.0    2.9  2  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
      0.012   16.4   2.5       0.12   13.2   2.5    2.7  1  PriA_C     Primosomal protein N C-terminal domain
      0.033   14.9   0.0      0.082   13.6   0.0    1.6  1  YukD       WXG100 protein secretion system (Wss), protein Yuk
      0.033   14.3   0.2      0.033   14.3   0.2    2.3  2  PARM       PARM
       0.16   12.3   7.8      0.033   14.5   3.9    1.8  2  DUF2935    Domain of unknown function (DUF2935)
       0.29   10.4  14.0        1.6    8.0  10.9    2.4  2  DUF3450    Protein of unknown function (DUF3450)
        1.2    8.1   2.8        2.6    7.1   2.8    1.5  1  TMEM237    Transmembrane protein 237
        2.4    8.2   8.8        2.9    7.9   7.6    1.8  1  DUF1664    Protein of unknown function (DUF1664)
        3.2    5.6   9.0        4.6    5.1   9.0    1.1  1  Prominin   Prominin
        9.7    5.0  11.7         16    4.2  11.7    1.3  1  LMBR1      LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.5     0.094   1.4e+02     177     211 ..      79     111 ..      69     115 .. 0.78
   2 !   40.4  20.5   1.3e-13   1.9e-10       4     106 ..      98     192 ..      95     214 .. 0.87
   3 !   29.4   2.5   2.9e-10   4.4e-07     136     197 ..     386     436 ..     368     453 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.094
     Taxilin 177 allkeeqekkkrekeyllkeakeltkkvkalkete 211
                 + + ee+e +++e+e   + a+e +k+v+ ++et 
  CDO73002.1  79 IAALEEEEVHEEEEER--RFAEEAQKSVSGMTETA 111
                 4456788899999999..99999******999986 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 1.3e-13
     Taxilin   4 eqlkeslsklespeekleaLvkkyaelleerkrlqkqlkklkkkleqlqkekeqlqaelskaalaksKLekLcRelqkqnkklkeeskqrareeeekrk 102
                 e+ ++s+s +++      a++ ky el++e krl++++ k   + ++l k+k++ +++l+ka+++k K+e+L Relqk nkkl+e+sk++a+  ee+++
  CDO73002.1  98 EEAQKSVSGMTE-----TAIHAKYIELFAEFKRLERDHAK---EKQKLVKDKDAAKSQLTKANQTKTKMENLARELQKDNKKLREDSKRLATCVEEAQE 188
                 556667777777.....899******************99...7789**********************************************999999 PP

     Taxilin 103 elae 106
                 e+++
  CDO73002.1 189 EISQ 192
                 9876 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 2.9e-10
     Taxilin 136 lteKlkslieqyelreehfekllktkelelqlaeaKlqqadallkeeqekkkrekeyllkea 197
                  +e+lk+++ qy+lre hfe ++++kele+ l++a+ ++++         + +e+e   ++a
  CDO73002.1 386 VQERLKEVLRQYKLRESHFECVVRSKELEVLLSRARAAEQK---------QLAEAEK--ARA 436
                 589**********************************4444.........4444444..333 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.9   2.8e+03      19      39 ..     154     174 ..     137     180 .. 0.69
   2 !   12.1   0.0   8.6e-05      0.13       2      36 ..     218     252 ..     217     256 .. 0.89
   3 !   16.2   0.0   4.7e-06     0.007      41      68 ..     307     336 ..     299     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
                 TTSBHHHHHHHHHHHHT---- CS
   Rad60-SLD  19 ptttvskLieayrkkkgipee 39 
                  +t+ ++L+++++k ++  +e
  CDO73002.1 154 TKTKMENLARELQKDNKKLRE 174
                 468888888888887765554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.6e-05
                 EEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT- CS
   Rad60-SLD   2 kiilkgkdgkevkikVkptttvskLieayrkkkgi 36 
                  + +++k   e+++k++++t++s L +a  +++++
  CDO73002.1 218 VVRVVCKYRAELYFKISRKTKLSRLFNAWTERMET 252
                 57799999********************9999876 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 4.7e-06
                 T-EEEET..TEE--TTSBGGGSS--TTEEE CS
   Rad60-SLD  41 kvrLiFD..GeeLdpnstvedldiedgdti 68 
                 ++++iF   G++L+p++t+e+++iedgd+i
  CDO73002.1 307 SMQFIFShgGRTLEPDETPEEAGIEDGDVI 336
                 5666665449******************98 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2      0.06        90      14      33 ..      65      84 ..      55      91 .. 0.79
   2 !   13.2   0.0   3.8e-05     0.057      38      67 ..     309     338 ..     300     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.06
                EEETTSBHHHHHHHHHHHHT CS
   ubiquitin 14 eveesdtveelKekiaekeg 33
                 v++s+ +e+lK++ia+ e+
  CDO73002.1 65 PVDPSQMYETLKNRIAALEE 84
                699*************9886 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.8e-05
                 GEEEEETTEEE-TTSBHGGHTTSTTEEEEE CS
   ubiquitin  38 qqrLiysGkvLedertleeygiqdgstlhl 67 
                 q+ + + G+ Le ++t+ee gi+dg+++  
  CDO73002.1 309 QFIFSHGGRTLEPDETPEEAGIEDGDVILA 338
                 5577889********************976 PP

>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.5     8e-05      0.12      16      83 ..     184     253 ..     143     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8e-05
      PriA_C  16 ekveeaaeelaellkealkleeve..ilgpapapiakikgryryqillksksrkalqkllkelleklekl 83 
                 e+++e+++++++ + ++++  +++   +  +p  + ++  +yr+ + +k +++++l++l +++ e++e++
  CDO73002.1 184 EEAQEEISQMKADMAKRAERAKIQenKYREMPDIVVRVVCKYRAELYFKISRKTKLSRLFNAWTERMETN 253
                 566777777776655543333333349*************************************998765 PP

>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.5e-05     0.082      52      74 ..     314     336 ..     291     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.5e-05
                 GGGEEEETTSBCGGGT--TT-EE CS
        YukD  52 vggapLsgdrtLaeagVrDGdlL 74 
                  gg+ L++d+t +eag+ DGd++
  CDO73002.1 314 HGGRTLEPDETPEEAGIEDGDVI 336
                 577******************98 PP

>> PARM  PARM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   5.2       9.3   1.4e+04      53      78 ..      30      55 ..       3     114 .. 0.40
   2 ?   14.3   0.2   2.2e-05     0.033       9     112 ..     227     327 ..     219     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9.3
        PARM 53 pvtasaetstlpknvsvepreeeats 78
                p+ta+++  t++ n ++ ++ +++++
  CDO73002.1 30 PTTAHTQPGTRTPNGTAVNGAHAPAQ 55
                22222222222222222222222222 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.2e-05
        PARM   9 tsaalpvslpakitpstatwtsspqntaavtasptsgtssnsvlpvtasaetstlpknvsvepreeeatspaskwegtetdpssvklsstssgveltpt 107
                 +   + +s  +k++++   wt+  ++ ++  as+++g+s  s+    +s ++s  p+   +++ ++++ts as+++g    +ss+++  + +g +l p 
  CDO73002.1 227 AELYFKISRKTKLSRLFNAWTERMETNVTGGASSAAGASMVSSTGNGSSGKKSGSPQMNGTNKADAASTSGASSSSGG---ASSMQFIFSHGGRTLEPD 322
                 55667889999****************9******************************9**************99964...455778888888888875 PP

        PARM 108 peehs 112
                  + ++
  CDO73002.1 323 ETPEE 327
                 43333 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.3     8e+03      64      93 ..      75     104 ..      69     109 .. 0.74
   2 ?   14.5   3.9   2.2e-05     0.033       6     118 ..     117     226 ..     112     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.3
     DUF2935  64 leeavakLneealkltreliqFkkellekv 93 
                 l++++a+L ee +++ +e ++F++e ++ v
  CDO73002.1  75 LKNRIAALEEEEVHEEEEERRFAEEAQKSV 104
                 567788888888888888888888777765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.2e-05
     DUF2935   6 ehlF..WlrimkeHalfiealldpke..kdlikeakefkkeFekllaeavelseglvrasseleeavakLneealkltreliqFkkellekvlscklfs 100
                 ++lF  ++r  ++Ha + ++l++ k+  k  + +a++ k + e+l +e +       + +++l e+ ++L + + ++ +e+ q k+ + ++ +  k++ 
  CDO73002.1 117 IELFaeFKRLERDHAKEKQKLVKDKDaaKSQLTKANQTKTKMENLARELQ-------KDNKKLREDSKRLATCVEEAQEEISQMKADMAKRAERAKIQE 208
                 5677779******************977778899***********99995.......599*************************************** PP

     DUF2935 101 iiypllidHilrEaeyYl 118
                   y  + d ++r  + Y 
  CDO73002.1 209 NKYREMPDIVVRVVCKYR 226
                 ****99999998777776 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.042        63      27      73 ..      46      92 ..      24     118 .. 0.77
   2 ?    8.0  10.9    0.0011       1.6      22      90 ..     131     199 ..     122     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.042
     DUF3450 27 kavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerl 73
                + + a a +qk ++k +d+  + ++ y++lk+++++le ++ + e+ 
  CDO73002.1 46 AVNGAHAPAQKGKKKATDQPVDPSQMYETLKNRIAALEEEEVHEEEE 92
                566778889999**********************9999876655543 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
     DUF3450  22 lkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqiee 90 
                  ke++k v+ + ++ ++ +k ++ k+++++  r+l++ +++l+   ++l+  v+++++ei++++ ++++
  CDO73002.1 131 AKEKQKLVKDKDAAKSQLTKANQTKTKMENLARELQKDNKKLREDSKRLATCVEEAQEEISQMKADMAK 199
                 578889999999999999999999999999999999999999999999999999999999999988765 PP

>> TMEM237  Transmembrane protein 237
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.8    0.0018       2.6       7      80 ..      81     154 ..      75     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
     TMEM237   7 eveeedvitdkekpisqqrslfsandkesqpvgkvyversrrfqaaerkdlqkseeevdlkddeksiiptlltt 80 
                 + eee+v +++e++   ++++ s++  ++ +++  y+e   +f++ er++ +++++ v++kd  ks  +++++t
  CDO73002.1  81 ALEEEEVHEEEEERRFAEEAQKSVSGMTETAIHAKYIELFAEFKRLERDHAKEKQKLVKDKDAAKSQLTKANQT 154
                 468899988885555555599**************************************777776665555554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.6     0.002       2.9      52     121 ..     125     194 ..     107     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
     DUF1664  52 qvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 ++  + a+ k++L ++ d   ++l + +++++++++   e+++d ++++ed++ + + ve+ ++++++++
  CDO73002.1 125 RLERDHAKEKQKLVKDKDAAKSQLTKANQTKTKMENLARELQKDNKKLREDSKRLATCVEEAQEEISQMK 194
                 566667899*******************************************************999986 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   9.0    0.0031       4.6     596     715 ..      78     197 ..      69     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0031
    Prominin 596 dLeklresglski.hsslyleqlckkltkvnletlaekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqes 693
                 ++ +l+e ++++  + + + e+ +k+++ +  +++++k  el  e+++ +++  ++ ++   + ++  + + ++ +++  k+++  ++l+++n++l+e 
  CDO73002.1  78 RIAALEEEEVHEEeEERRFAEEAQKSVSGMTETAIHAKYIELFAEFKRLERDHAKEKQK-LVKDKDAAKSQLTKANQTKTKMENLARELQKDNKKLRED 175
                 55556655554431445688888888888888888888888888886664333333333.33335666777788888999999999999********** PP

    Prominin 694 ikkllaaveraenflkkngsei 715
                  k+l + ve+a++++ +  +++
  CDO73002.1 176 SKRLATCVEEAQEEISQMKADM 197
                 ************9998766554 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  11.7     0.011        16     201     323 ..      78     206 ..      61     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
       LMBR1 201 elkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilk............kvPeeiaeklks.............nenkteesla 274
                 ++  + +e++++++e+ee  r++    +e++k+ + ++e++   ky+e   +            +          +             + n+t+ ++ 
  CDO73002.1  78 RI--AALEEEEVHEEEEE--RRFA---EEAQKSVSGMTETAIHAKYIELFAEfkrlerdhakekQ----------KlvkdkdaaksqltKANQTKTKME 159
                 33..33466666644444..5555...77777777777777555788877777655554333320..........233345566677767777899999 PP

       LMBR1 275 klekqlikalqkrertekqwkrllekalelediiknksskekefksses 323
                 +l ++l+k  +k ++ +k++ +++e+a   e+i + k++  k+ ++ + 
  CDO73002.1 160 NLARELQKDNKKLREDSKRLATCVEEA--QEEISQMKADMAKRAERAKI 206
                 999999999999999999999999999..77777777777666665432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3061  (0.170729); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 3018.70
//
Query:       CDO73003.1  [L=579]
Description: hypothetical protein BN946_scf185007.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-45  155.2   0.0    2.6e-45  154.8   0.0    1.1  1  UDPGP         UTP--glucose-1-phosphate uridylyltransferase
  ------ inclusion threshold ------
      0.025   14.9   0.0      0.075   13.4   0.0    1.9  2  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.8   0.0   2.9e-49   2.6e-45       7     339 ..     135     507 ..     130     578 .. 0.85

  Alignments for each domain:
  == domain 1  score: 154.8 bits;  conditional E-value: 2.9e-49
       UDPGP   7 lferylee.kskqekidwdkieplpeeevvdyedl..kekeeekkell....nklavlkLnGglGtsmGckgpKslieVr..dgktfLdlivqqie... 93 
                 ++++ +++ k+ +e+  +++ieplpe+++ +   l  ke+e+++  l       + vl ++Gg+Gt++G + pK+ +++   ++k++++ ++++i    
  CDO73003.1 135 IYNKAVSSeKELKESAGKEAIEPLPEDATDSVIGLpeKEREWREIGLHaiarGEVGVLLMAGGQGTRLGSSAPKGCYDIGlpSHKSLFQYQAERIArlq 233
                 555555442677889999*****************54344444444335666899*************************99**************777 PP

       UDPGP  94 ......elnkkynvdvPlvlmnSfnTdedtekilk..kykk.kkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLkn....... 176
                         +    v +P++ m+S  T + te ++k  k+++ + ++++ f+q+ +P ++ + ++ +e++++     + +P+G+G++y +L +       
  CDO73003.1 234 kiaeeaAGKPAGSVVIPWYVMTSGPTRQVTEAFFKqhKFFGlDPKNVIIFEQGTLPCLTMDGKVLLETRSR----VAVAPDGNGGVYAALRRplspsdp 328
                 666654445566799********************7777888999*********************98885....89*************854433333 PP

       UDPGP 177 .sglldkllaeGkeyiFvsniDN.lgatvDlkilnllvekkaeflmevtektradvkgGtlieyegklrlleiaqvpkehveefksvkkfkifntnni. 272
                    +l +l+++ ++y++ +++DN l+ ++D+ ++++ ++k+a+++ +v+ k  +++ +G++++  +k+ ++e++++ +++++e ++++    f + ni 
  CDO73003.1 329 sHTVLSDLERRKIRYVHSYCVDNcLVRIADPVFVGYGIQKQADCATKVVPKAYPTESVGVVARRGDKFSVVEYSEI-SREQAERRDANGGLAFRAANIv 426
                 2579************************************************************************.6667889999999999999988 PP

       UDPGP 273 ..winlkalkrlv.eekelkleiivnk.ktld.egekviqletavgaaiksF........kkavginVpR.srflpvktts 339
                   + + ++lk++   e+el  +i+++k  ++d +  + i+   ++g++++ F        k + +++V+R ++f+p+k++ 
  CDO73003.1 427 nhFYTTDFLKSVKaFEEELAFHIARKKiPHVDlSTGESIKPASPNGMKLEMFvfdvfpftKRFAVLEVERrEEFSPLKNAP 507
                 9899*******99778***********9****97778********************************989******975 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.82   7.4e+03      85     115 ..      72     101 ..      17     112 .. 0.54
   2 ?   13.4   0.0   8.4e-06     0.075       2      37 ..     192     232 ..     191     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.82
                   SSSCEEEEETT-TT--HHHHHHHHHCHHHHT CS
  NTP_transf_3  85 dadavlvlacDmPlltpelverllaaaaasg 115
                    ++a l+l++  + l+   +++l+++++a+g
    CDO73003.1  72 PSTAPLFLPVSAV-LRVMSIDALRQRYEAAG 101
                   3444445555443.35555556655555554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.4e-06
                   EEEEESS-TTTTT..THHHHCC...CCCCHHHHHHHHHCTT CS
  NTP_transf_3   2 viLAGGrSsRmgg..dKallpl...ggkpllervldalraa 37 
                   +++AGG+++R+g+  +K  +++     k+l+++++++++++
    CDO73003.1 192 LLMAGGQGTRLGSsaPKGCYDIglpSHKSLFQYQAERIARL 232
                   789*********889*******888899*******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3923.61
//
Query:       CDO73004.1  [L=108]
Description: hypothetical protein BN946_scf185007.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 761.06
//
Query:       CDO73005.1  [L=236]
Description: hypothetical protein BN946_scf185007.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-44  148.9   0.1    3.4e-21   75.0   0.1    2.1  2  Lum_binding  Lumazine binding domain
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.28   11.3   0.0    1.6  1  SspH         Small acid-soluble spore protein H family


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   3.8e-25   3.4e-21       1      87 []       3      91 ..       3      91 .. 0.82
   2 !   72.0   0.0   3.3e-24   2.9e-20       1      87 []     104     196 ..     104     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3.8e-25
                 -S--SEEEEEEEEE.ECGCTTEETEES..GGGGG..TTT-EEEETTEEEEEEE..EEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesiekeekledltielp..elakylvekGdsiavnGvcLTVvt..eeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tG++e++gtv++i ++  +  +t+ ++  +   + ++ GdsiavnG+cLTV++  +e + ++f+v +++eTl+rt lge kvgd+VNlEra
   CDO73005.1  3 TGLIEHLGTVSDIVHD--AGGCTLVISdsAPILTDCHVGDSIAVNGACLTVTEfdKEEKGGWFKVWLANETLDRTDLGERKVGDQVNLERA 91
                 8************655..45555555533333444577*************867655569*****************************96 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 3.3e-24
                  -S--SEEEEEEEEE.ECGCTTEETEES.......GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp.......elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87 
                  + +V++++t+++ ++++++ ++ ++lp       +l +y+++kG ++a++G++LT+++ + ++++f v++i++T+e++tl  + +g+kVN+E++
   CDO73005.1 104 QAHVDTTATIVDKKPDGDSLRILFQLPeptperpSLLQYIIPKG-YVAIDGTSLTITSVDDANRTFGVMLIQHTQEKITLPIKPIGSKVNIEVD 196
                  67***********99999999999999*****************.***********85444599****************************97 PP

>> SspH  Small acid-soluble spore protein H family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.2e-05      0.28      18      54 ..     149     185 ..     146     187 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.2e-05
        SspH  18 VtYngkpVwIehvdeenetAtVhfldnpeeeqeVpvn 54 
                 V  +g++  I +vd++n+t  V  +++++e+++ p++
  CDO73005.1 149 VAIDGTSLTITSVDDANRTFGVMLIQHTQEKITLPIK 185
                 667899999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1600.02
//
Query:       CDO73006.1  [L=443]
Description: hypothetical protein BN946_scf185007.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   11.2   1.5       0.51   10.5   1.5    1.3  1  DUF148    Domain of unknown function DUF148


Domain annotation for each model (and alignments):
>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   2.9e-05      0.51      43      96 ..     228     281 ..     223     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.9e-05
      DUF148  43 kvkaqkeevkknvtavisnLssvqekleaIldnkslTrkeqkeaieelkkqypk 96 
                 + +++k +++++ ++ i+ L+  +++l aI +  + T++ q  +i+el+ ++ +
  CDO73006.1 228 EDTERKRKAEAKSNRKIADLEITNRSLLAINSSLEATKHKQAREIRELRRKLRE 281
                 568899999999*************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2946.62
//
Query:       CDO73007.1  [L=1285]
Description: hypothetical protein BN946_scf185007.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.1e-240  797.5   0.2   1.1e-239  797.2   0.2    1.1  1  Myosin_head   Myosin head (motor domain)
    3.7e-56  189.8   0.0    7.4e-56  188.8   0.0    1.6  1  Myosin_TH1    Unconventional myosin tail, actin- and lipid-bi
    7.8e-11   41.7   0.3      2e-10   40.4   0.3    1.8  1  SH3_9         Variant SH3 domain
    1.3e-09   37.5   0.9    2.7e-09   36.5   0.9    1.6  1  SH3_1         SH3 domain
    2.6e-09   36.6   0.0      9e-09   34.9   0.0    2.0  1  SH3_2         Variant SH3 domain
    4.9e-05   23.5   1.5    9.8e-05   22.6   0.6    2.0  2  SH3_3         Bacterial SH3 domain
     0.0092   15.8   0.2      0.024   14.5   0.2    1.7  1  SH3_4         Bacterial SH3 domain
  ------ inclusion threshold ------
      0.038   14.4   0.0       0.17   12.2   0.0    2.1  2  AAA_16        AAA ATPase domain
      0.069   13.4   0.0       0.18   12.1   0.0    1.6  1  AAA_22        AAA domain
      0.069   12.7   1.0        8.2    5.9   0.1    2.4  2  Hpr_kinase_C  HPr Serine kinase C-terminal domain
       0.13   12.2   0.0       0.27   11.1   0.0    1.5  1  NACHT         NACHT domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  797.2   0.2  6.8e-243  1.1e-239       2     677 .]      44     707 ..      43     707 .. 0.97

  Alignments for each domain:
  == domain 1  score: 797.2 bits;  conditional E-value: 6.8e-243
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                   d++ L++++++++ enl+kR+k+ +iYty+g vl++vnP++ l iy+++v+++ykgk+r e+pPH+faia++ay ++ +++enq+++isGEsGAGKt
   CDO73007.1  44 SDMTLLTTITNEAINENLEKRWKNGEIYTYIGAVLISVNPFRDLGIYTDEVLQKYKGKNRLEVPPHVFAIAESAYYNMNAYHENQCVIISGESGAGKT 141
                  79************************************************************************************************ PP

                  HHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SBHHHHHH CS
  Myosin_head 100 eatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERnyHiFYql 197
                  ea+K+++qy+a+v++ ++ ++ +e+++++l++nP+lE+fG Akt+rn+nssR GK++ei f+ +g+++ga+i++YLLEk Rvv q ++ERn+HiFYq+
   CDO73007.1 142 EAAKRIMQYIAAVSGGQD-SSIQEIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIMFNDHGEPIGAQITNYLLEKGRVVGQVENERNFHIFYQF 238
                  ***************999.6889*************************************************************************** PP

                  HHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHHHHHH CS
  Myosin_head 198 lagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeeklekaael 295
                   + a++e ++++ l+++++yay+s s++l+v+gidd+++f+et ka++++gl++ eq ei+r++a+il lGn+++ ++++++ a+++d++  + +  l
   CDO73007.1 239 TKAAPDEYREAFGLQTPDAYAYTSLSNCLDVPGIDDVQDFSETIKAMQVIGLTDYEQYEIWRMLAIILWLGNVQYGEKDDGN-AEIADTSVTDFVGYL 335
                  ****************************************************************************999886.99999999******* PP

                  HTS-HHHHHHHHHSEEEEET.....TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SSB-HHHHHHH CS
  Myosin_head 296 lgvdaeelekalvkrriktg.....kevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifeknsFEqlcin 388
                  + vd++++++al+++ ++t+      +v+ ++ln  qa+  rdalakaiy++lF+w+v+++n s++ ++ +++++iG+LDi+GFEife nsFEqlcin
   CDO73007.1 336 MEVDTAQVQRALTTKIMETQrggrrGSVYDVPLNPAQASAGRDALAKAIYNNLFEWIVSKVNVSMKPRS-ATAQLIGILDIFGFEIFEDNSFEQLCIN 432
                  *******************99999899**************************************9999.99************************** PP

                  HHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHS.SSTSHHHHHHHHHTSTTS....-HHHHHHHHHHHHTTSTTEEETTSTTTT CS
  Myosin_head 389 yvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiek.kplGilslLdeecllpka....tdetfleklvkafskhakfeksrlkkge 481
                  yvnEkLqq+F+el+lk+EqeeYvrE+i+w+ i++ ++n++++dLie+ +p Gi++ L++ c +++a     d++f++++++  s++++fe        
   CDO73007.1 433 YVNEKLQQIFIELTLKTEQEEYVREQIKWTPIKY-FNNKIVCDLIEEkRPPGIFAALNDACATAHAdptaADNSFVQRMAS-LSSNPHFEAR-----G 523
                  **********************************.**********9978************99776555589999999986.5778999655.....5 PP

                  TEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEE CS
  Myosin_head 482 akFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnph 579
                  a+F++kHyAg+v Y+v+g  +KnkD l +dl++l+ +s +++l+ lf++               +   ++kk++ t++ ++k s ++L+++l +++p 
   CDO73007.1 524 AQFLVKHYAGDVLYNVSGMTDKNKDVLVKDLLDLVAASGNQFLQGLFPD---------------RPDPNSKKRPPTASDRIKASANALVENLMRAQPS 606
                  89***********************************************...............456778889************************* PP

                  EEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS....SSSHHHHHHHHHHHTTS-GCGEEECSSEE CS
  Myosin_head 580 fvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkl...lkedakkaveailkeleldkeeykiGktKi 674
                  ++R ikpn++++++++d++ vl+q+++lG+ e+ir+rraGf++R tfe++v+r++ll++ +       +++dak+a+e il+++ + +ee+++G tK 
   CDO73007.1 607 YIRTIKPNQNRSPTEYDTKAVLHQVKYLGLQENIRVRRAGFAYRNTFEKMVERFYLLSPATSYAGeyiWQGDAKTACERILTDTGIAREEWQMGVTKA 704
                  ************************************************************99887899****************************** PP

                  EET CS
  Myosin_head 675 Ffr 677
                  F++
   CDO73007.1 705 FIK 707
                  *97 PP

>> Myosin_TH1  Unconventional myosin tail, actin- and lipid-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   4.5e-59   7.4e-56       1     187 []     765     961 ..     765     961 .. 0.96

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 4.5e-59
  Myosin_TH1   1 kvlasellkgkKerrrfsll..rkFegDYLglenesevgkelkkkvgkdqdekvlFssr....vkKlnrssksskrilvlTdkalylldpkkvk..... 88 
                 +++++++l+g+Kerrrfsll  r+F+gDYL+++ +s+ g+el +++g+  ++kv+Fssr    v+K++rssk+s+r+lvlT+kaly+  ++  k     
  CDO73007.1 765 RDYGHQVLAGRKERRRFSLLgyRRFMGDYLDINGKSALGEELAEACGIG-RDKVVFSSRaqllVSKFGRSSKPSPRFLVLTEKALYIAVTNA-Kdgqtv 861
                 89******************************888*************5.***************************************976.5589** PP

  Myosin_TH1  89 .vlkrriplseItsvsvsplqDdlvvlhlke.skgDllleldfktElvtklskaykkktnkklkvkisdtieyklkkkktrtvkfqkd...kgkdsyks 182
                  +l+r+ipl +I+s+s+s+l+Dd++v++l+  ++gD++++++fktEl t++     + t+++++v i++ti+y++k +k++++kf+kd   ++ d+yks
  CDO73007.1 862 tMLERKIPLITIKSISMSNLRDDWIVFNLGPtEEGDPIISCVFKTELTTHI----LRLTQGSVNVLIGPTITYTKKREKKAEIKFIKDetvPRGDVYKS 956
                 9****************************986789****************....788899*************************99777679***** PP

  Myosin_TH1 183 ltvsv 187
                 +tv+v
  CDO73007.1 957 HTVHV 961
                 ***98 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.3   1.2e-13     2e-10       1      49 []    1066    1113 ..    1066    1113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.2e-13
       SH3_9    1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49  
                  A+yp++ +e  e+ Lq++D++ + e++++gW++++++G  G+ P ny+e
  CDO73007.1 1066 AKYPFQGQE-GEMTLQKDDIVELVEKEDNGWWLVKKDGVEGWAPNNYLE 1113
                  89****887.9************************************97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.9   1.6e-12   2.7e-09       1      47 [.    1065    1108 ..    1065    1109 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.6e-12
                  EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1    1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47  
                  +A+Y+++++ ++E++++k+D+++++ek+++gWw ++ +  g eG+ P
  CDO73007.1 1065 RAKYPFQGQ-EGEMTLQKDDIVELVEKEDNGWWLVKKD--GVEGWAP 1108
                  79****997.68**************************..69***99 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   5.5e-12     9e-09      13      55 ..    1074    1113 ..    1053    1115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.5e-12
                  CCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEE CS
       SH3_2   13 kseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslve 55  
                  ++e++++k+d++ ++   +k+++gww++ ++G+ G++P++++e
  CDO73007.1 1074 EGEMTLQKDDIVELV---EKEDNGWWLVKKDGVEGWAPNNYLE 1113
                  5679***********...***********************98 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.8   1.1e+04      17      30 ..     853     866 ..     852     867 .. 0.81
   2 !   22.6   0.6     6e-08   9.8e-05      18      55 .]    1078    1113 ..    1077    1113 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.8
       SH3_3  17 gtlpyGekVevlee 30 
                 +  + G++V+ le+
  CDO73007.1 853 TNAKDGQTVTMLER 866
                 56788******997 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 6e-08
       SH3_3   18 tlpyGekVevleetgggeWykvrtddgteGwvssgyls 55  
                  tl++ + Ve++e++++g W+ v + dg eGw+ + yl+
  CDO73007.1 1078 TLQKDDIVELVEKEDNG-WWLV-KKDGVEGWAPNNYLE 1113
                  7999********99999.****.*************96 PP

>> SH3_4  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.5e-05     0.024      20      51 ..    1078    1109 ..    1069    1113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
       SH3_4   20 yleaGvpvrvv.ackgnWcrvrDadGatGWiyq 51  
                  +l+++ +v++v +++++W  v+ +dG +GW+  
  CDO73007.1 1078 TLQKDDIVELVeKEDNGWWLVK-KDGVEGWAPN 1109
                  5666666666659*********.*******975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.17      22      49 ..     125     152 ..     114     181 .. 0.79
   2 ?   -3.8   0.0       8.9   1.5e+04     138     161 ..     549     572 ..     535     579 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_16  22 grpelvllsGesGvGKsslvrellrale 49 
                 ++ ++v++sGesG GK+  ++++++++ 
  CDO73007.1 125 HENQCVIISGESGAGKTEAAKRIMQYIA 152
                 4449******************997665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.9
      AAA_16 138 vlvlDdlqwadeaslqllaaLlrl 161
                 vlv D l+ + ++  q+l+ L+ +
  CDO73007.1 549 VLVKDLLDLVAASGNQFLQGLFPD 572
                 888899999999999999998866 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.18       4      27 ..     126     149 ..     122     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_22   4 tagilvvtGesGtGKTtllrrlle 27 
                 + +++++ GesG+GKT  ++r+++
  CDO73007.1 126 ENQCVIISGESGAGKTEAAKRIMQ 149
                 6789****************9875 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.005       8.2      21      39 ..     130     148 ..     126     170 .. 0.90
   2 ?    4.8   0.1     0.011        18      80     148 ..     409     477 ..     405     480 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.005
                   EEEEESTCHHHHHHHHHHH CS
  Hpr_kinase_C  21 vLitGesgvGKselaleLi 39 
                   v+i Gesg GK+e+a  ++
    CDO73007.1 130 VIISGESGAGKTEAAKRIM 148
                   99************97765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.011
                   EEEHHHHH-GGGB-SEEEEEEEEEEESTT---TTTSTTSS-EEEEETTEEEEEEEEE--TTS-HHHHHH CS
  Hpr_kinase_C  80 iidvkklfGaeavrekkeielvveLeewekkkeydrlgleeetkeilgvkvpkvtipvkpgrnlaviie 148
                   +i + ++fG e +++++  +l+++ ++ + ++ + +l+l++e++e++  +++ + i   + + +  +ie
    CDO73007.1 409 LIGILDIFGFEIFEDNSFEQLCINYVNEKLQQIFIELTLKTEQEEYVREQIKWTPIKYFNNKIVCDLIE 477
                   5677789*******************************************9999888888888877777 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.27       2      26 ..     129     153 ..     128     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                  vi+ Ge+G GKT  ++++++ +a+
  CDO73007.1 129 CVIISGESGAGKTEAAKRIMQYIAA 153
                 589*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.48
# Mc/sec: 8017.44
//
Query:       CDO73008.1  [L=703]
Description: hypothetical protein BN946_scf185007.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-30  104.4   0.1      2e-29  102.5   0.1    2.0  1  UNC45-central  Myosin-binding striated muscle assembly centra
    0.00085   19.7   0.4       0.33   11.3   0.1    3.4  3  U3snoRNP10     U3 small nucleolar RNA-associated protein 10
  ------ inclusion threshold ------
       0.21   10.8   0.2       0.52    9.5   0.1    1.6  2  DUF2950        Protein of unknown function (DUF2950)
        3.4    8.2   9.1         55    4.4   0.0    5.2  5  HEAT           HEAT repeat


Domain annotation for each model (and alignments):
>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.1   4.4e-33     2e-29       2     153 .]      32     193 ..      31     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 4.4e-33
                    HHHHHHHHC-T---TTHHHHHHHHHHHHH..........HHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHH CS
  UNC45-central   2 hldlllkfldmrqpesvrslallilskll..........daakeefeeaiseflesllekgdeddllnalsvltalFpvvpdvasalflsegfles 87 
                     l lll+   ++ p+s++s+a+++ls+++          ++ ++++ ++++  ++s++++++e +++++l++l+alF v+  +asa+f+ +g++es
     CDO73008.1  32 ELALLLSAFSPTHPSSLHSKAYIVLSAFCqrrrveastlEEGTQAICKTFEIPVSSRIADTEEREVVAGLAFLAALFDVDHLSASAIFQHDGLVES 127
                    57899999999******************999999999989999999************************************************* PP

                    HHHHHHS..S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHHHHH-SSHH..HHHHHHTTSST- CS
  UNC45-central  88 llelves.kkskkvqlaalellsaAcidkkcrkaiaknyvewLeelvkssddeklvkalAavvLaKL 153
                    +++ ++   ks++v++++++ll  A+++k+cr++  k + +wLe  ++++dd++l +a+Aav+++KL
     CDO73008.1 128 VMDALDLfPKSRNVEISVAHLLGRAAGQKACRALLGKDHRNWLEWKSRQKDDPEL-RAAAAVAMVKL 193
                    *****************************************************95.**********8 PP

>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   7.3e-05      0.33       9      99 ..      36     152 ..      32     164 .. 0.70
   2 ?    0.4   0.0      0.17   7.8e+02      16      39 ..     177     200 ..     170     205 .. 0.83
   3 ?    3.2   0.0     0.023     1e+02      48     102 ..     533     592 ..     528     603 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.3e-05
                 HHHHHT-TT-HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHH--....GGGHHHH........HHHHHHHH...........HT-SS-S--HHHHH CS
  U3snoRNP10   9 llegLlssssadlqaaaymilsvLaskvpLsdkvleallesilknls....kelaksa........llcllvla...........qsqsakllpkkvlk 84 
                 ll++++ ++ + l+  ay++ls ++++   ++++le  +++i+k+++    + +a  +        l++l++l+           q+   + l ++v+ 
  CDO73008.1  36 LLSAFSPTHPSSLHSKAYIVLSAFCQRRRVEASTLEEGTQAICKTFEipvsSRIAD-TeerevvagLAFLAALFdvdhlsasaifQH---DGLVESVMD 130
                 5666666444478888*****************************88766433333.26899*999999999997766655554443...368899999 PP

                 HHTTSTT.......HHHHHHHH CS
  U3snoRNP10  85 allklps.......ladvLeel 99 
                 al+  p+       +a +L ++
  CDO73008.1 131 ALDLFPKsrnveisVAHLLGRA 152
                 9888777666444444444444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
                 TT-HHHHHHHHHHHHHHHHTT-S- CS
  U3snoRNP10  16 sssadlqaaaymilsvLaskvpLs 39 
                 +++++l+aaa + +++La   +L+
  CDO73008.1 177 KDDPELRAAAAVAMVKLAKGSNLD 200
                 5689*************9877776 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.023
                 HHHHHH--...GGGHHHHHHHHHHHHHT-S..S-S--HHHHHHHTTSTTHHHHHHHHTTT CS
  U3snoRNP10  48 esilknls...kelaksallcllvlaqsqs..akllpkkvlkallklpsladvLeelske 102
                 e i +++    +++ ks+l +ll+l++     ++l  + +l +l++ p+  ++L+el +e
  CDO73008.1 533 EEIFNKWGgekNSASKSKLQVLLALCDVDDlpTRLAASGALASLTASPEACASLVELQNE 592
                 566666665556778888********5443324456688999999999999999998876 PP

>> DUF2950  Protein of unknown function (DUF2950)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.1   4.9e+03      23      49 ..     155     181 ..     151     196 .. 0.70
   2 ?    9.5   0.1   0.00012      0.52      10      45 ..     355     390 ..     352     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.1
     DUF2950  23 eaalakvlGkeakelvesgdevadred 49 
                 ++a +++lGk++++++e +++ +d  +
  CDO73008.1 155 QKACRALLGKDHRNWLEWKSRQKDDPE 181
                 567788999999999988775555444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
     DUF2950  10 AaealveavaaedeaalakvlGkeakelvesgdeva 45 
                 A+eal++av+a+d++a+++++Gk + +lve +d+ +
  CDO73008.1 355 AMEALTSAVRATDSRAVRSLVGKAILSLVEDKDNRE 390
                 99****************************999543 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.012        55      12      30 ..     178     196 ..     173     197 .. 0.91
   2 ?   -2.0   0.1       1.4   6.5e+03       8      29 ..     362     384 ..     356     385 .. 0.68
   3 ?   -3.4   0.0       3.9   1.8e+04      16      29 ..     474     487 ..     471     489 .. 0.77
   4 ?    3.5   0.1     0.024   1.1e+02      12      31 .]     513     532 ..     502     532 .. 0.82
   5 ?    1.7   0.3     0.091   4.1e+02       3      28 ..     552     577 ..     551     579 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.012
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                 ++pe R+aAa a+++la++
  CDO73008.1 178 DDPELRAAAAVAMVKLAKG 196
                 589*************997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
                 HHT-SSHH.HHHHHHHHHHHHHH CS
        HEAT   8 llsDpspe.VReaAakaLgalae 29 
                 + + ++++ VR+ + ka+  l+e
  CDO73008.1 362 AVRATDSRaVRSLVGKAILSLVE 384
                 55555555599999999888876 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHH CS
        HEAT  16 VReaAakaLgalae 29 
                 +R  A  aL++l++
  CDO73008.1 474 QRFEAMMALTNLSS 487
                 67888889998876 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.024
                 SSHHHHHHHHHHHHHHHHCS CS
        HEAT  12 pspeVReaAakaLgalaevl 31 
                 ++  VR+aA + +++l+ ++
  CDO73008.1 513 DHTLVRRAATELVCNLVAGC 532
                 5678************9887 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.091
                 HHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsD.pspeVReaAakaLgala 28 
                  +ll l +D ++   R aA  aL+ l 
  CDO73008.1 552 QVLLAL-CDvDDLPTRLAASGALASLT 577
                 566775.56377779********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4751.89
//
Query:       CDO73009.1  [L=414]
Description: hypothetical protein BN946_scf185007.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-67  226.8   0.0    5.5e-67  226.0   0.0    1.3  1  Gcd10p      Gcd10p family
  ------ inclusion threshold ------
      0.089   13.0   1.3       0.15   12.2   1.3    1.3  1  GIDA_assoc  GidA associated domain


Domain annotation for each model (and alignments):
>> Gcd10p  Gcd10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.0   0.0   6.1e-71   5.5e-67       1     281 [.      21     271 ..      21     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 226.0 bits;  conditional E-value: 6.1e-71
      Gcd10p   1 lIkpndhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeeeeearsnreiid 99 
                 +I+ ++++l+kLps+ ++ ++++++tt++LgKfgsf +n+++g+p+glt+ei dk+       l+v+p++  +  +++++          +++n+ i+d
  CDO73009.1  21 TIQVGHTLLVKLPSGDIRSIKLEKDTTVNLGKFGSFFANELVGQPFGLTYEITDKK-------LKVLPPRPMQ--EVEDT----------EATNELIND 100
                 699****************************************************9.......7888655443..33333..........357888888 PP

      Gcd10p 100 dgarQkLtkeeIeeLKkegtsagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyllekkdaqkilelreetlglllslan 198
                  +  Q Lt eeIe+LKk g + ++eiI+k +e+h++   KT++S+eKY+krK+ KY k f+v ++++ +++ey+++ kd++++ ++r +tl++++slan
  CDO73009.1 101 GQLVQPLTVEEIEALKKAGLH-ASEIIKKQIEQHANYSLKTEYSKEKYKKRKEMKYSKSFSVIEPTMHNVCEYWFN-KDQNRLRDIRPDTLAQIMSLAN 197
                 888******************.9*****************************************************.9********************* PP

      Gcd10p 199 vhaggryLvvDdtgGLlvaalaeRmgifessakegtivliheneq.pnlsllkyfnydaaepehplkkhlktlswlqllepeed 281
                 +++ggry+ vDd +G++v a+++R+g+      +g++  i + e+ p   +l ++n+     ++ ++  + +l+w +  e+ + 
  CDO73009.1 198 IRPGGRYIAVDDASGVVVSAILDRLGG------RGRLLTICDIESpPAYPVLVQMNF----RKEAVSPIMSSLNWATADEEYTP 271
                 ***************************......********999989**********....899999999*****986554444 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.3   1.7e-05      0.15     112     203 ..     106     200 ..      69     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
                 T--HHHHHCCHHHHHHHSCHH.HHHHHHHHHCH...HHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTSTTS-H CS
  GIDA_assoc 112 evkledlleelpeeeeeseee.leqveieakYe...gyiekqeeeieklkkeenlkipedldYskikgLskearekLkkvrPetlgqAsrisGvtp 203
                  +++e++ e+l+++  + +e  ++q+e +a+Y+   +y +++ ++ +++k +++ ++ e    + ++   +  +++L+++rP tl+q   +  ++p
  CDO73009.1 106 PLTVEEI-EALKKAGLHASEIiKKQIEQHANYSlktEYSKEKYKKRKEMKYSKSFSVIEPTMHNVCEYWFNKDQNRLRDIRPDTLAQIMSLANIRP 200
                 3456666.4444444444555599999999997222566666677778888889999999999999999******************999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2844.66
//
Query:       CDO73010.1  [L=501]
Description: hypothetical protein BN946_scf185007.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-54  183.4   0.0      1e-53  182.8   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.0   5.6e-58     1e-53      26     462 ..      59     493 ..      35     494 .. 0.84

  Alignments for each domain:
  == domain 1  score: 182.8 bits;  conditional E-value: 5.6e-58
                 HHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSHSTTTHHHHHHHHHH CS
        p450  26 lrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsfgklsleelveeeae 123
                  + ++k yg++f++ l ++ + ++sgp++v+e+  + +ee s+   e  ++ s +  ++ g  +++   +   +R  lt+++       l ++++e + 
  CDO73010.1  59 QEGYKKYYGSVFKVPLLEQWILIVSGPKMVEELRRRPDEELSFA--EG-VEDSMQIRHTFGPETDEDpYHVDIIREKLTRSIPAI----LPDVIDELNL 150
                 35678888***********************************5..44.444455666777766666566667777777776655....7889999999 PP

                 HHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHH CS
        p450 124 dlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlld 221
                  + e++  k++e  e+ + + l+++   +++++++g ++  ++d  +  +++++ ++     k++  l++l p +lk+l +kl   +++  ++ + +l+
  CDO73010.1 151 AVPERIPAKSDEWLEVAVMPTLQQIIAQISSRVFVGPPLCRNQDYLN-LAIAFTIDI---I-KDR-TLVKLAPsFLKPLVGKLSNNVRRTLRQTIPHLK 243
                 9999999999999899999*******************884555433.333443333...3.444.466666669999999999999999999999999 PP

                 HHHHHHHHCHCHC....SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHH CS
        p450 222 klieerretldsa....kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyd 316
                 ++i er e +++     +++++d+l+ +++++ ++k++   + e +a  +l + fa+++T+s+t+s +Ly+La++Pe++e lreEi++++++ +  t +
  CDO73010.1 244 PIIDERWELMEKLgddwTDKPNDMLQWVIDTSRTRKDN---TYEAIARRILLVNFAAIHTSSNTISNVLYHLAERPEYMEPLREEIESIVRE-EGWTKN 338
                 99999988888888899899***********9555555...9************************************************88.47**** PP

                 HCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS........CTESSCTT--TTE CS
        p450 317 dlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg........nskrksfaflPFG 406
                  + ++  ld +++E+LR+  +   +l+R+++ dv++++  ++p G++++  + a+h+d++v+ + e+Fdp RF++ ++        ++   s  ++PFG
  CDO73010.1 339 AMGRMWKLDSFLRESLRYNGIGLASLTRKALVDVTFPDgTFVPRGSIIMAAANATHHDDSVYADSEVFDPFRFSRMREadgegtkhQFVNTSLDYIPFG 437
                 **************************************9*************************************999*****9988889******** PP

                 EGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSSSEEE CS
        p450 407 aGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkpiklk 462
                  G+++C+G+ +A  elk +la ++ n++++l  +++ p++  +   ++p +++k++
  CDO73010.1 438 HGKHACPGRFFAANELKSLLAYIILNYDLKLGGDGSRPQNIYWALNVIPAPNGKIL 493
                 ******************************95555555544444677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3654.39
//
Query:       CDO73011.1  [L=259]
Description: hypothetical protein BN946_scf185007.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-76  254.9  10.7    9.1e-76  254.8  10.7    1.0  1  Ceramidase  Ceramidase


Domain annotation for each model (and alignments):
>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.8  10.7   5.1e-80   9.1e-76       2     237 ..      18     259 .]      17     259 .] 0.94

  Alignments for each domain:
  == domain 1  score: 254.8 bits;  conditional E-value: 5.1e-80
  Ceramidase   2 yWgpvtStidwCEenYvvtpyiAEfvNTlsnllfillallgiynaakkklekrfllaylglalvGlgSalFHaTLkyetQllDelsmiyatalvlyavf 100
                 +Wgpvt+t+dwCE nY++++yiAE +NT+sn++++ la++g+  aa+ kl  r+l+ ++g+alvG+gS++FHaTL++e+Ql+Del+m+y+++ ++ ++f
  CDO73011.1  18 FWGPVTATLDWCEANYQFSRYIAEAANTFSNVYTVGLAVYGALYAARAKLPPRYLIGWMGFALVGIGSFIFHATLRFEAQLMDELPMVYVASYCCAILF 116
                 8************************************************************************************************** PP

  Ceramidase 101 se....kksrstrvllgvlltalavvvtllylvlkepvlhqvafalltvlvllrsiyliekkv..dksdeaakkevkklallgliifllgfliWnlDnl 193
                  +    + ++s+   l+v+ +++ v++t+ y+++++pv+hqv+fa +++++l+r++yl++ +   ++  +  +  v++l+l g+++f++gf++WnlDn+
  CDO73011.1 117 DTargfSLRESNALQLSVIFVVFNVLFTWSYYLSRDPVYHQVVFASIMFTTLFRTLYLLRDDEiaKRLPSGPRAIVTRLFLAGAATFACGFFVWNLDNI 215
                 99776666666999999999***************************************654444455567788899********************** PP

  Ceramidase 194 fCstltrlrraiglplgvllelHgwWHiltgigayilivlleyl 237
                 fC  +tr++++ig+p +++le+H+wWHilt++g+y+++v  +yl
  CDO73011.1 216 FCLAVTRWKHTIGWPAAFVLEGHSWWHILTATGTYLMLVGNTYL 259
                 *************************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1933.80
//
Query:       CDO73012.1  [L=947]
Description: hypothetical protein BN946_scf185007.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-36  122.8   0.0    1.4e-35  122.0   0.0    1.5  1  BRCA-2_OB1      BRCA2, oligonucleotide/oligosaccharide-bindin
    6.6e-06   25.9   0.3    0.00012   21.8   0.2    2.2  2  BRCA-2_helical  BRCA2, helical
  ------ inclusion threshold ------
      0.032   14.0   0.3       0.07   12.9   0.3    1.5  1  Rb_C            Rb C-terminal domain


Domain annotation for each model (and alignments):
>> BRCA-2_OB1  BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   2.3e-39   1.4e-35       1     122 [.     616     737 ..     616     738 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 2.3e-39
                 -HHHHHHTTSSTT--SEEEEEEE----------------------EEEE-SS-EEEE---HHHHHHHHTT-S-TT-EEEES--EE.ES--S---GGG-- CS
  BRCA-2_OB1   1 salkkilerDdsaskpmvLcVsaiekkesekeekekekeksekaeleltDGWYsikavlDaalsrllkrgkikvGqKlvvagael.vgseeavspleas 98 
                 +al+ i ++D++a+ pmvLcVs+i+ + s+  +k +    +++aele+tDGWY+++a +D +l+r+++rg+i vG+Kl++ ga+l   ++e++++lea+
  CDO73012.1 616 PALRLISTEDAPAACPMVLCVSNITMRGSSMVTK-EGIPLETHAELEVTDGWYRLRANVDLPLARAIRRGRICVGTKLAISGAKLsGDRKEPCEVLEAY 713
                 79***********************999988765.889999********************************************556799******** PP

                 SS-EEE--TTTEEE--SSS-SEE- CS
  BRCA-2_OB1  99 eklllkisaNstrrarwnakLGfq 122
                 +++ l++++Nst+ a+w+akLGf+
  CDO73012.1 714 DNTFLELTGNSTNLAPWHAKLGFV 737
                 **********************98 PP

>> BRCA-2_helical  BRCA2, helical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.032   1.9e+02      49      84 ..     489     525 ..     478     531 .. 0.86
   2 !   21.8   0.2     2e-08   0.00012     134     184 ..     557     610 ..     545     612 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.032
                     S-S---STT-S-STTT--.TTTSS--TTTTTT--B-T CS
  BRCA-2_helical  49 gklpskyseeqlyelgvs.kkvlevssenaesfkFev 84 
                     g +p +y+e++l  + ++ +++++++ +na  ++F+ 
      CDO73012.1 489 GLRPMSYTEDELEDMRINvEELRQMRPSNAVYYRFHS 525
                     6679999*****999987468999***********96 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2e-08
                     S--CCHHHHHHHHHHHHHHHCCTT-TTT-ST...TSSSHHHHHHHHHHHHHHHT CS
  BRCA-2_helical 134 LisekWvvnhyrWivwKlaamErafpkefas...rcltpervLlqlkyRYdvEi 184
                     L +++Wv+nhy  i+wKla + +  p+  ++   +     +v+ ql yRY+ E+
      CDO73012.1 557 LATQEWVTNHYGLILWKLAGLVCLEPEREQDpstKRWCWPEVIRQLLYRYEREL 610
                     7899***************8766666654431114455668*********9886 PP

>> Rb_C  Rb C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.2e-05      0.07      22      74 ..     428     488 ..     416     514 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
        Rb_C  22 pykfsnsplrvpgsnnvyvsplkspr...lspsk...mtprs.rllvsiGes.fgtsekfq 74 
                 p   ++sp + p ++  +vsp+ks++   +sp k   mtpr   ll s+G+s f t+ k+ 
  CDO73012.1 428 PVAGPSSPAQAPPGTSAFVSPVKSSKpasVSPVKalgMTPRRmGLLGSVGKSkFATPFKLD 488
                 666689******************99888777655569**86257889*987577766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6429.39
//
Query:       CDO73013.1  [L=295]
Description: hypothetical protein BN946_scf185007.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   13.2   0.5         11    7.2   0.0    3.4  3  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.078   1.4e+03      22      40 ..      27      45 ..      26      46 .. 0.86
   2 ?    0.6   0.1     0.075   1.3e+03       9      29 ..     118     138 ..     116     154 .. 0.84
   3 ?    7.2   0.0   0.00059        11       3      33 ..     230     260 ..     228     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.078
      TPR_14 22 allrralalaPddaeawll 40
                +++ ++l+l+P+ +e++l+
  CDO73013.1 27 EIYSEVLQLCPNLRELHLH 45
                57999*******9999875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.075
      TPR_14   9 eallalGdpdeAiallrrala 29 
                 + l+ + + ++A++  ++al+
  CDO73013.1 118 RQLWYSNRRQQARRFIEWALS 138
                 57888999999*******998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00059
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd 33 
                 +l++l ++++++G++ eA+++ r+   +  d
  CDO73013.1 230 VLADLSAYYERSGRHLEAVTYHRDSTGDEGD 260
                 68999****************9998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2068.16
//
Query:       CDO73014.1  [L=519]
Description: hypothetical protein BN946_scf185007.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-39  134.6   0.0    5.5e-39  133.5   0.0    1.6  1  Peptidase_M16    Insulinase (Peptidase family M16)
    7.6e-33  114.1   0.0    1.6e-32  113.0   0.0    1.5  1  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   6.1e-43   5.5e-39       1     149 []      51     198 ..      51     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 6.1e-43
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    rva+es+ p ++s+vgl+vdaGSrye +d  G++H+l++mafk+T +++++++a+ +++lGg++ +++ re ++Y+ + +++ ++ al +++d++ 
     CDO73014.1  51 RVATEST-PGHFSSVGLYVDAGSRYERPDELGVSHFLDRMAFKTTRTRSEEQMAADIDALGGQILCSSARESIMYQSSHFHQGTPLALSLISDTVL 145
                    6999999.**************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-TH CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgpe 149
                    +p++ ++e+e++r+++++e+ +v+a+pe +++e lh  ay  k lg++ll+pe
     CDO73014.1 146 NPAFLPEELEAQREAARYEIREVSAKPEMILPEVLHHVAYGGKGLGNPLLCPE 198
                    ***************************************************95 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   1.8e-36   1.6e-32       7     183 .]     209     432 ..     204     432 .. 0.92

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.8e-36
                      HHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH...........................................CSGSCTSS CS
  Peptidase_M16_C   7 lkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska...........................................ppakptge 57 
                      +++f++k+Y+pe+mv+a +G  +h+elv+l++k+f++l   +                                            + + p++e
       CDO73014.1 209 MRNFMRKWYTPERMVIAGAG-MEHQELVELADKHFSRLARASPvrsnqsqqqpqvptnllgasisspisafksltraassykthdvQAPRPINE 301
                      799*****************.******************8877*************************************99975333333333 PP

                      SSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHHHHHHHHHHHHSS...TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEE CS
  Peptidase_M16_C  58 pltpatlkkppvvlkkldeeqahlslafegpskendeddlalavlntlLggg...mesrLytnlrekeglaysvsafndsyrdsglfgisatad 148
                           t+++++ ++++ + e++h++la+eg+++ +d+d +  a+++ lLgg    m+srLyt+++++   ++++ +f+++y+ds+lfg+ a+  
       CDO73014.1 302 G---STYTGGHRFIHDPESEFNHVYLAYEGVGI-HDDDVYTVATMQVLLGGPgkgMYSRLYTHILNRFPQIDHCASFHHIYTDSSLFGLFASFL 391
                      3...57***************************.*******************************99999************************ PP

                      CT...THHH...HHHHHHHHHHHHHHHTS-HHHHHHHHHHH CS
  Peptidase_M16_C 149 pe...nvee...vvevilkelrklkkeglteeeleraknql 183
                      p    +++    ++  +  +l  l    ++ eel+raknql
       CDO73014.1 392 PSngrHADSpahILPHLAHQLSLLLYSNIPSEELSRAKNQL 432
                      **8863333777****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3583.05
//
Query:       CDO73015.1  [L=932]
Description: hypothetical protein BN946_scf185007.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-27   96.0   0.3    1.3e-26   93.1   0.0    2.3  2  Transposase_21  Transposase family tnp2
    4.7e-05   23.0   0.0    0.00013   21.5   0.0    1.7  1  DUF4218         Domain of unknown function (DUF4218)


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.069   6.2e+02     145     192 ..     194     241 ..     183     254 .. 0.84
   2 !   93.1   0.0   1.5e-30   1.3e-26      21     159 ..     277     412 ..     270     434 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.069
  Transposase_21 145 klacvtCkknteslrlkngkklcylghrrfleanhrlrrkkksfdgka 192
                     +  c+ C++  +  + +  ++++yl     l+a+h+ r++ ++++ +a
      CDO73015.1 194 ESICPFCQEPRRDAHGRARQRFVYLPVIPRLKAQHANRETATKLQYRA 241
                     567******9999999999*******************9998887655 PP

  == domain 2  score: 93.1 bits;  conditional E-value: 1.5e-30
  Transposase_21  21 eefaedprnvrlglatdGfnPfgsmsssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkdidvylePlvddlkelweeGvetydalke 115
                     ++f ed+r+  +gl++dGf Pf++ s   + Wp++li+ynlPP + ++ +n++   +ipGpk+P  d+d +l Pl+++l++l   Gv++ydal++
      CDO73015.1 277 HHFFEDARDTAFGLSSDGFAPFKRRS--KTAWPLILINYNLPPEIRMHLDNIMGLGIIPGPKKPA-DFDSFLWPLMQELLRLAI-GVHAYDALTD 367
                     6899*******************765..679********************99999********5.9***************98.********** PP

  Transposase_21 116 ekfnlravllwtindfPalstlsGlst.kgklacvtCkknteslr 159
                      +f lra l+    d Pa+s++  ++  +g   c +C+    s+ 
      CDO73015.1 368 AFFALRAYLILVFGDIPAISMIMRMKGhNGACPCRMCSIRGISIP 412
                     ********************9987665145666777776655544 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.5e-08   0.00013      38      91 ..     653     705 ..     648     722 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-08
     DUF4218  38 vHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsiaEayvaee 91 
                  H  +H++d +  aGPv + + +p+eR+   l+  +r +  p  s+   yv+++
  CDO73015.1 653 IHALLHIADSILFAGPVWASWAFPMERYCGALQPAIRSRRFPYASLN-RYVVDQ 705
                 6999**********************************998887764.455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 5406.56
//
Query:       CDO73016.1  [L=169]
Description: hypothetical protein BN946_scf185007.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.018   13.9   0.1      0.023   13.5   0.1    1.1  1  Fmp27_WPPW   RNA pol II promoter Fmp27 protein domain
       0.33    9.4   6.1       0.39    9.2   6.1    1.0  1  Herpes_UL25  Herpesvirus UL25 family
       0.42    9.7   4.6       0.58    9.2   4.6    1.2  1  Atg14        Vacuolar sorting 38 and autophagy-related subuni
       0.87    8.4   9.1        1.2    8.0   9.1    1.2  1  MscS_TM      Mechanosensitive ion channel inner membrane doma
       0.87    8.9  15.1        1.1    8.5  15.1    1.1  1  DUF4407      Domain of unknown function (DUF4407)
        2.3    7.0  10.1          3    6.7  10.1    1.1  1  Spc7         Spc7 kinetochore protein
        7.9    3.8  16.1        9.5    3.6  16.1    1.0  1  DUF3584      Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.1e-06     0.023     181     301 ..      12     146 ..       5     157 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.1e-06
  Fmp27_WPPW 181 eeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse...............eeeskskelsaastsesfse 264
                 ++l+ q+e+ +++l  +++++e++ ++l++  +++e++++ l   +   e++    ++   +++                                   
  CDO73016.1  12 RQLKLQLEEANTRLAAAQESQEQNAAALEAAQQQIEEQTAALAAVRAQAEAAEAAATQAVLAQQaalndagaanaaeppL------------------- 91 
                 56777777777777777777777644444444444444444444444444333333333222223334444444443331................... PP

  Fmp27_WPPW 265 lde....................lasseesaseFknRFiihniqlkwnnslRnillr 301
                   +                    l+  e s+ ++    ++hn  l w+ + R+  ++
  CDO73016.1  92 --QlipkprvprgkslsiqrsmgLDDDEYSEIRYGIHHLVHNASLAWERDFRHQNVE 146
                 ..123334444444444444455899999999******************9986444 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.1   0.00015      0.39      21     159 ..       6     147 ..       3     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00015
                  ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXX CS
  Herpes_UL25  21 slrepereaellreealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaar....pplspssasplt 114
                  s++ + r+++l +eea ++ ++  e +e  ++al+a+ ++++++++ala +++++ +++E+++++++ +++aa ++ +aa+      +l p++  p  
   CDO73016.1   6 SRSVTVRQLKLQLEEANTRLAAAQESQEQNAAALEAAQQQIEEQTAALA-AVRAQAEAAEAAATQAVLAQQAALNDAGAANAaeppLQLIPKPRVPRG 102
                  5667778888888888888788888888888999999999988888876.689999999999999999988888888877776643345566666666 PP

                  XX--EE................E-SSTTS--EEESS-HHHHHHHH CS
  Herpes_UL25 115 avasaeevgkgkesrddeiagevaIvknDpvlrvdtdfrvelvst 159
                  +  s +++    ++  +ei + ++ +   + l  ++dfr + v+t
   CDO73016.1 103 KSLSIQRSMGLDDDEYSEIRYGIHHLVHNASLAWERDFRHQNVET 147
                  666666666666666777777777777778888888888766655 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.6   0.00023      0.58      65     127 ..       7      69 ..       2      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
       Atg14  65 kkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnelee 127
                 ++  +++lk + ++ + rl+  +++++q+ +++e+++++++++ ++l+  r+++e+++    +
  CDO73016.1   7 RSVTVRQLKLQLEEANTRLAAAQESQEQNAAALEAAQQQIEEQTAALAAVRAQAEAAEAAATQ 69 
                 566789999***************************************888888888766555 PP

>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.1   0.00045       1.2     248     303 ..       7      60 ..       4      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00045
     MscS_TM 248 RwllvarRRlayerakekRaaalaqrakeeeeeeekkesaeveepeldleaisaQs 303
                 R ++v + +l++e+a  + aaa+++++++ ++ e+  +++++ee++ +l+a+ aQ 
  CDO73016.1   7 RSVTVRQLKLQLEEANTRLAAAQESQEQNAAALEA--AQQQIEEQTAALAAVRAQA 60 
                 89999999********9999887666666655554..44559************95 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  15.1   0.00043       1.1     185     258 ..      11      86 ..       4      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00043
     DUF4407 185 akekkaqldaaqaelaelkakld.atarlaalraelaeleaerakeraasqaaa.aaddGllarlealdrltkeda 258
                  ++ k ql++a+++la+++++ + ++a+l+a++++++e +a++a+ ra+ +aa+ aa + +la+  al++  +++a
  CDO73016.1  11 VRQLKLQLEEANTRLAAAQESQEqNAAALEAAQQQIEEQTAALAAVRAQAEAAEaAATQAVLAQQAALNDAGAANA 86 
                 6788999**********9999778999***********99999999888776650556778999999998776665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.1    0.0012         3     198     251 ..      15      68 ..       4      79 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeia 251
                 k +Lee+  +la++++  e+  + l+  q+q+ee++++++++++q + +e++  
  CDO73016.1  15 KLQLEEANTRLAAAQESQEQNAAALEAAQQQIEEQTAALAAVRAQAEAAEAAAT 68 
                 345666666666666666666666666666666666666666555555555444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  16.1    0.0037       9.5     603     667 ..      13      77 ..       3      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0037
     DUF3584 603 eLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekese 667
                 +L+ +l+ +++ l++a+++q+q  ++l+++++++ee+ +a+a  +++++ a+    ++  +++++
  CDO73016.1  13 QLKLQLEEANTRLAAAQESQEQNAAALEAAQQQIEEQTAALAAVRAQAEAAEAAATQAVLAQQAA 77 
                 89999999999999999999999999999999999999999999999999999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2398  (0.13375); expected 358.6 (0.02)
Passed bias filter:                      910  (0.0507558); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1139.26
//
Query:       CDO73017.1  [L=342]
Description: hypothetical protein BN946_scf185007.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2565.99
//
Query:       CDO73018.1  [L=326]
Description: hypothetical protein BN946_scf185007.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-76  258.1   3.1    1.3e-76  257.9   3.1    1.0  1  FPN1      Ferroportin1 (FPN1)
  ------ inclusion threshold ------
      0.013   14.3   0.6      0.022   13.6   0.6    1.2  1  CreD      Inner membrane protein CreD
      0.071   13.0   1.4       0.28   11.1   0.1    2.2  2  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi


Domain annotation for each model (and alignments):
>> FPN1  Ferroportin1 (FPN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.9   3.1   2.2e-80   1.3e-76     154     435 .]       1     291 [.       1     291 [. 0.93

  Alignments for each domain:
  == domain 1  score: 257.9 bits;  conditional E-value: 2.2e-80
        FPN1 154 lrriDllckllapllvglllsfvslkiaigfilvvnlvsvvveyillakvYrkvpalaekeekkeeeeeeakeeetkakeakses...slvkrvaeavk 249
                 +rriDl+ckllapl+v+ll++++s++ a++f+++v ++++v+e++ +   Y+++pal+e +  +e+ +  +  e++++++++ ++   s+++ +  +++
  CDO73018.1   1 MRRIDLICKLLAPLFVSLLTTVASYRFAAIFLCAVEVACMVFELLWIEIAYHRFPALREAQAAREAMRGVHGREDERQSSSQRQPiyiSVIEVMLGKMR 99 
                 9**************************************************************999998888875555555555511155566666788 PP

        FPN1 250 tvvagWkeYvrqpvflaslalslLyltVLsFdtlmtaylkseglsasvisllrgvsavtgilgTfafpllekrigllrtGlislvaqlsclllavasvl 348
                  +  +W+e+ + p+fl+sl++s LyltVLsFd +m +ylk + +s+ +++++rg+ +++g++gT+a+p+le+++gl+r+G +s++++++cll + + ++
  CDO73018.1 100 ATLFDWREFTQYPIFLSSLSISCLYLTVLSFDGTMLSYLKAHAYSDPFLAGMRGLNVIAGLAGTLAMPVLERKLGLVRAGNWSIWSEVVCLLPVLITFY 198
                 8889******************************************************************************************99999 PP

        FPN1 349 lpgspm.....skisvvlllagvalsRlGlwsfdlavtqllQegvpes.ernvvggvqnslqslldllkfilviiapnpeeFgilvliSvvav 435
                 + + ++     + +++vll+ g++lsR+Glw+fdl +++ lQ   +++ +rn + ++q slq+++d+lk+il+ii+++p++F++++l S+++v
  CDO73018.1 199 VGAPTSdgtkgPTWNAVLLFGGMMLSRIGLWAFDLCQLKELQLALEAHpRRNSLTALQYSLQNVADMLKYILTIILSRPSQFKYAALASFLSV 291
                 98866699999*******************************9998874789*************************************9987 PP

>> CreD  Inner membrane protein CreD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   3.7e-06     0.022     319     376 ..     249     306 ..     239     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.7e-06
        CreD 319 klrihpiqYlLvGlalvlFYlLllslsEhlgFelAYliaalavvllislYlssvlksk 376
                 + ++  +qY L  +a +l Y+L + ls   +F++A l + l+v++  s+Yl++v k++
  CDO73018.1 249 RNSLTALQYSLQNVADMLKYILTIILSRPSQFKYAALASFLSVLAGASTYLAYVRKER 306
                 567889**********************************************998876 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.7e-05      0.28      50      91 ..      26      67 ..       9      83 .. 0.86
   2 ?    0.3   0.1     0.093   5.6e+02     113     153 ..     249     289 ..     237     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
     Wzy_C_2 50 klvlrvvalvlallglalllsilhdyqrleqlyltsepneaa 91
                ++++ ++++v ++++++ ll+i++ y+r+ +l+ +++ +ea 
  CDO73018.1 26 RFAAIFLCAVEVACMVFELLWIEIAYHRFPALREAQAAREAM 67
                678899**************************9999988765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.093
     Wzy_C_2 113 llelgllplspenlaaklalarklihlsPepavierlilsl 153
                    l+ l+ s +n+a++l+    +i + P +  ++ l+  l
  CDO73018.1 249 RNSLTALQYSLQNVADMLKYILTIILSRPSQFKYAALASFL 289
                 55678888999999999999999999999999888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2363.84
//
Query:       CDO73019.1  [L=1111]
Description: hypothetical protein BN946_scf185007.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-33  115.1   1.4    9.9e-32  110.4   0.1    3.4  2  PXA            PXA domain
      8e-29  100.5   0.2    7.4e-28   97.4   0.0    2.8  3  Nexin_C        Sorting nexin C terminal
    1.6e-18   66.7   0.0    1.1e-17   64.0   0.0    2.4  2  PX             PX domain
    2.3e-10   40.8   0.1    1.7e-09   38.0   0.1    2.6  2  RGS            Regulator of G protein signaling domain
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.012   15.2   0.1    2.3  2  Isy1           Isy1-like splicing family
      0.015   15.5   8.6       0.12   12.6   3.8    2.9  2  ABC_tran_CTD   ABC transporter C-terminal domain
       0.06   12.8   0.0       0.11   11.9   0.0    1.3  1  Peptidase_C54  Peptidase family C54
        0.3   11.6   3.2        2.5    8.6   0.1    2.9  2  ParB           ParB family


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.13     3e+02       5      21 ..       3      19 ..       2      20 .. 0.91
   2 !  110.4   0.1   4.4e-35   9.9e-32      47     181 ..      25     166 ..      19     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.13
         PXA  5 deelhellalilrdfVl 21
                +++++++l li+rdfVl
  CDO73019.1  3 SAAINDILILIVRDFVL 19
                579*************6 PP

  == domain 2  score: 110.4 bits;  conditional E-value: 4.4e-35
         PXA  47 alanrlkkvDlaqllltrlldlltshlrdyrqaeekvkskkae......eesdldlaakffa...lephpalsavlrdieeskeaelaylrslverlLs 136
                 +l +r++++Dl +ll++r+l+ +t+h++++rq+e +++++  e      ee+d  la+++ a   +++hpa++++ +  + ++++e+++lr lv++ L+
  CDO73019.1  25 RLLARATSLDLSALLVNRILPKVTAHIEQFRQSEVALRGAGLErkltqsEELDILLASRYAAkggGKLHPAVDNLSS--TFTRQTEENHLRGLVDKALP 121
                 67789999*********************************99*******************999********8885..689999************** PP

         PXA 137 lllppedlesetvrtlvreilanvvlkplleklsdPdfinqliik 181
                 ++lp+++ +s++v+++vrei+a++vl+p++e+l+dPdf+n++i +
  CDO73019.1 122 HILPEKEARSRAVKIVVREIVACSVLYPVMEMLADPDFWNRMIDQ 166
                 ******************************************976 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.1   6.9e+03      20      67 ..     158     205 ..     141     226 .. 0.61
   2 ?   -2.9   0.0       4.5     1e+04      20      48 ..     432     460 ..     425     488 .. 0.69
   3 !   97.4   0.0   3.3e-31   7.4e-28       1     111 [.     981    1088 ..     981    1089 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
     Nexin_C  20 dtierwlkekiekltseeavaslikklrdalWPdgeskaesapersee 67 
                 d  +r++ +      ++++++s ++++ +a  P  +++  + p  ++e
  CDO73019.1 158 DFWNRMIDQVAGAAIRQQRLISKVRNILEAQLPRSHPRLADVPATTTE 205
                 556666666666677788888888888888887664444444444444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.5
     Nexin_C  20 dtierwlkekiekltseeavaslikklrd 48 
                  ++er +++ +e++++ e + + i  +  
  CDO73019.1 432 RQVEREMEQDFEDFQRSELWFRAIADIHA 460
                 67899999999999999999999988873 PP

  == domain 3  score: 97.4 bits;  conditional E-value: 3.3e-31
     Nexin_C    1 Wlrrqaltvlkqvlqqllgdtier.wlkekiekltseeavaslikklrdalWPdgeskaesaperseeeklrtraearklLlellpdalvsvvGrkn 96  
                  Wlrrqa+   +++lqq+lg+tier +l+e+++++ +e +++ +++ +rd+lWP+g + ++++ +r+ eekl tr ea ++L +l+pd++++++Gr+n
  CDO73019.1  981 WLRRQAI---VIILQQVLGTTIERrKLRETVKSFLDEPHLLMYVNTFRDSLWPGG-NLKPPSTPRTVEEKLHTRDEANRKLSALMPDLVANMIGRSN 1073
                  *****99...************9769*******999*****************88.88888899********************************* PP

     Nexin_C   97 aeealkrifellQnp 111 
                  a+++++rif+++Qn+
  CDO73019.1 1074 ARRGARRIFAVMQNR 1088
                  *************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.5e+03      73      98 ..     200     227 ..     174     235 .. 0.60
   2 !   64.0   0.0     5e-21   1.1e-17       6     112 ..     740     849 ..     736     850 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                 CTTSHHHHHHHH..HHHHHHHHHHHTSC CS
          PX  73 rkkdeefiekrr..kgLeeyLqrllnhp 98 
                  + ++e i++r   k++e++L+++++ +
  CDO73019.1 200 PATTTETITIRTdaKQFESFLRSISRCS 227
                 3344455555544489999999988765 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 5e-21
                 EEEEEEEEETTSSEEEEEEEEEETTS......SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSC CS
          PX   6 vsvleretsgskkhsyylyevelktg......akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhp 98 
                 v +++++   ++ + ++ y +e+++       a+ w v RrY++F++ h+kL++k+  vk   +P+k+l+ s    + +f+++rr +Le+yLq+l+  p
  CDO73019.1 740 VAIVNSTVGEEDGKQVVRYLIEVQQLapdgshASGWVVARRYNEFFNMHNKLREKYALVKNLDFPGKRLVTS---LSGSFVDSRRVALEKYLQSLIAIP 835
                 677777766889999999999999999999**************************************9987...************************ PP

                 HHHHSHHHHHHHHS CS
          PX  99 elrnsevlteFLev 112
                   ++se+l+ FL+ 
  CDO73019.1 836 AVCESEELRAFLSR 849
                 ************85 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   3.2e+03      42      93 ..     173     222 ..     158     235 .. 0.70
   2 !   38.0   0.1   7.6e-13   1.7e-09       2     115 ..     310     451 ..     309     454 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSSSTTTTTTHHH CS
         RGS  42 eqeelkkkakeIyneylapsspkelnidkklreelekrlekeqpsrklfeea 93 
                  q+ l++k+++I+++ l +s p+  +++  ++e+++ r     ++ + f + 
  CDO73019.1 173 RQQRLISKVRNILEAQLPRSHPRLADVPATTTETITIRTDA--KQFESFLRS 222
                 56778888999999988777777778888888888777666..444444444 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 7.6e-13
                 HHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS...................SHHHHHHHHHHHHHHHHTSTTSTTSS..TS-HHHHHHHHHH CS
         RGS   2 leslledqpgrslFreFlesefseenlsFwlaveefkka...................keqeelkkkakeIyneylapsspkel..nidkklreelekr 79 
                 l+++l +++ +s+F eF+++++++  ++Fwl ve fk+                    +++  lk+++  I + y+++  p  +   +++k  ++++++
  CDO73019.1 310 LRDILTNPSSLSYFMEFMDRRHRSLLVQFWLTVESFKNPlesvdsgssdeddeplldpAQSATLKDDISLINELYFSSPVPDPVlsAVSQKHINTIRSF 408
                 899*****************************************************98888888999*********99999887789**********99 PP

                 HCSS........STTTTTTHHHHHHHHHHHHHHHHHHHHTSHHH CS
         RGS  80 leke........qpsrklfeeaqeevfellekdsypkFlksely 115
                  + +        +  r+    aq++v + +e+d +++F++sel+
  CDO73019.1 409 GQSAetstsaseRRVRRSVMLAQRQVEREMEQD-FEDFQRSELW 451
                 888899*****9999999999*********987.9******986 PP

>> Isy1  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   5.5e-06     0.012      35     105 ..     222     296 ..     214     312 .. 0.84
   2 ?   -7.1   6.7         8   1.8e+04     234     234 ..     677     677 ..     561     785 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.5e-06
        Isy1  35 lasevkslkeaekwrrqvirEIsrkvakIqdaglgey....qiRdlNDeiNkLlrekrhWekrIkeLgGpdykrk 105
                  +s ++sl +a++ r++++ EI r  + + +++ ++     +  d+   + +L   kr+ ekrI  LgG+  +r+
  CDO73019.1 222 SISRCSSLLDARRLRNDIMGEIRRTRTLLANNANSDWingeKTEDIVAFLDRLYTAKRKVEKRIVVLGGEADSRQ 296
                 6899*************************99887664222277777777899*****************887773 PP

  == domain 2  score: -7.1 bits;  conditional E-value: 8
        Isy1 234 v 234
                 +
  CDO73019.1 677 L 677
                 1 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.023        52      36      58 ..     561     585 ..     555     589 .. 0.81
   2 ?   12.6   3.8   5.6e-05      0.12       7      60 ..     664     717 ..     661     718 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.023
  ABC_tran_CTD  36 lysdp..eklaelsaeleeleaeLe 58 
                   l++dp  ++ +e s+++e+++a+L 
    CDO73019.1 561 LFNDPedAEQQEQSQRMEAIQAALT 585
                   566776688************9996 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.6e-05
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeel 60 
                    +e+++l ++I++L+++ a l++ + ++el  d ++l  l + + +l  eL el
    CDO73019.1 664 SHEIQRLTNKIDKLQTQDAMLDTLIKKAELSGDAQELRLLRKSKSALTRELREL 717
                   5899**********************************************9886 PP

>> Peptidase_C54  Peptidase family C54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.8e-05      0.11      90     192 ..     874    1015 ..     861    1020 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.8e-05
  Peptidase_C54   90 hrlvkigk.slgkkvge.WfgPstvaqilkklvekakeeaglkvyvaqdssvvykddvkklakeskk........................... 154 
                     h lv++   s+  ++ + +fgPs    i+++l+ +a+e  g++ + ++d++ ++ + +k+  k++ +                           
     CDO73019.1  874 HGLVRTMYqSVAESIDDmFFGPSMLDVIIQRLTTQAAEFVGITGTAVHDEE-LVAQALKASGKST-Sedalmqlsgdlkpldgetststfsspi 965 
                     55565555455555544389**************999999***99999987.9999996443333.34789999999***************** PP

  Peptidase_C54  155 ............ekeekkwkpvlilvplrlGldkvnpkyvealkellklk 192 
                                 ++++ + ++++i+++  lG++  + k  e++k++l+ +
     CDO73019.1  966 cdfilavfelnkKDNWLRRQAIVIILQQVLGTTIERRKLRETVKSFLDEP 1015
                     *********887777777799999999*****999999999999999866 PP

>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0011       2.5      53     103 ..     234     287 ..     204     289 .. 0.83
   2 ?    2.0   0.5      0.12   2.8e+02      27     103 ..     661     735 ..     656     737 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
        ParB  53 eqkseilklikkeskrlkkpkkkdka...vvekLaefedkkqfarkktkkRlvs 103
                   ++ i++ i++ +  l ++ + d     ++e ++ f d+   a++k++kR+v+
  CDO73019.1 234 RLRNDIMGEIRRTRTLLANNANSDWIngeKTEDIVAFLDRLYTAKRKVEKRIVV 287
                 56899********999999888876444589********************985 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
        ParB  27 velseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaefe.dkkqfarkktkkRlvs 103
                  +ls  i++++++i+k+q++++  +   k++ l    +e + l k+k+     + +L+e   +k+q+ ++   +Rlvs
  CDO73019.1 661 LQLSHEIQRLTNKIDKLQTQDAMLDTLIKKAELSGDAQELRLLRKSKSA---LTRELRELRfQKNQYEQQDSANRLVS 735
                 6788889999******999999999988888888777777777776666...45556554436778888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 7870.61
//
Query:       CDO73020.1  [L=176]
Description: hypothetical protein BN946_scf185007.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-20   72.9   0.2    4.2e-10   39.4   0.1    2.1  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     5e-12     9e-08      34      94 ..       2      65 ..       1      67 [. 0.81
   2 !   39.4   0.1   2.3e-14   4.2e-10       5      81 ..      77     156 ..      73     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5e-12
                HHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr 34 qtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94
                q+q++ +kk + +    +ldv+ k++++eG+rg  rGl+p+ + ++  ++ ++++ye ++r  +
  CDO73020.1  2 QLQGELAKKGGEKVyknALDVIAKTWRNEGIRGVQRGLGPAYVYQILMNGSRLGFYEPIRRQCN 65
                55555544433332445****************************************9998765 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 2.3e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS...STTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkks...skksksaaildvlkkiykeeGlrglyrGllpnllrvapasal 81 
                 +l ++++G+++g++++++ +P+ ++K r+q+ +     +++ ++++ +d+l++i++ e +rgl rG+ ++ lr+a  s++
  CDO73020.1  77 PLTSMFSGAASGIIGASLGNPFFLIKARMQAYSPVlpvGAQHYYKSSFDALRNIWHGERFRGLVRGIDAAALRTAMGSSV 156
                 67899**************************6655333333344449****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1274.19
//
Query:       CDO73021.1  [L=456]
Description: Glycoside Hydrolase Family 7 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-215  714.4  16.8   5.1e-215  714.2  16.8    1.0  1  Glyco_hydro_7  Glycosyl hydrolase family 7


Domain annotation for each model (and alignments):
>> Glyco_hydro_7  Glycosyl hydrolase family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  714.2  16.8  2.8e-219  5.1e-215       1     434 []      21     456 .]      21     456 .] 0.99

  Alignments for each domain:
  == domain 1  score: 714.2 bits;  conditional E-value: 2.8e-219
                    E-SSS----EEEEEEEECTTSCEEEEEEEEEE-GGGS-EEETTSS-BSEETTEE-TTT-SSHHHHHHHEEE--HHHHHTC-EEEETTEEEEESEEE CS
  Glyco_hydro_7   1 vgtktaevhpklttqkCtkaggCkkkkgsvvldanwrwlhkvegstnCytgnkwdktlCpdeetCaknCalegadYeetygittsgdaltlklvtk 96 
                    vgt tae+hpkl++q+Ct +++C+++++svvld+nwrwlh+++gs+nCytgn+wd++lCpd+ tCaknCal+gadY++tygittsg++l+lk+vt+
     CDO73021.1  21 VGTLTAENHPKLSVQQCTGKNQCQTQQHSVVLDSNWRWLHSTSGSNNCYTGNTWDTSLCPDPVTCAKNCALDGADYSGTYGITTSGNQLSLKFVTH 116
                    6899******************************************************************************************** PP

                    SSSSEEE-EEEEEEEETSTEE-EEE-TTEEEEEEEE-TT--TTEEEEEEEE---TTTTTTT-TT--SGGGGT----BTT--S--SEETTEE--TT- CS
  Glyco_hydro_7  97 eeksknvgsrvylleedekkYemfkllnkeftfdvdvsklpCGlngalyfvemdadGgksksetnkaGakyGtGYCdaqcprdlkfingeaNvegw 192
                    + +s+n+gsrvyl++++++kY++f+l+n+eftfdvd+sklpCGlngalyfvemdadGg+s++++nkaGakyGtGYCd+qcp+d+kfingeaN+ gw
     CDO73021.1 117 GPYSTNIGSRVYLMDSSDQKYQIFNLKNQEFTFDVDMSKLPCGLNGALYFVEMDADGGVSRFPNNKAGAKYGTGYCDTQCPHDIKFINGEANILGW 212
                    ************************************************************************************************ PP

                    EEESSETTEEE-SEEEE--EEEEEEEESSEEEEEEE-BSSSS-EEEEGGGG-S..STTSSSB-SS-EEBETTTTT-TTSEETTSSEETTS-EEEEE CS
  Glyco_hydro_7 193 kpseedanagvgklGacCaemdiweaNsiataltphpcskkgqtkCegeeCgg..eryagvcdkdGCdfnsyrlgnkdfyGkgktvdttkkftvvt 286
                    +ps++d+nag+g++G+cC+emd+weaNs+ +a+tph cs +gqt+C+g++Cg+  +ry+g+cdkdGCdfns+r+g+++f G+gktv+t++kftvvt
     CDO73021.1 213 TPSSNDPNAGSGQYGTCCNEMDVWEANSMGAAVTPHVCSVQGQTRCSGNDCGDgdNRYNGICDKDGCDFNSWRMGDQTFLGPGKTVNTNQKFTVVT 308
                    ****************************************************668***************************************** PP

                    EEEETTSSTTS.EEEEEEEEEETTEEEE---EESTTCES.SSBCHHHHHHHHHHHT-.-HHHHTTHHHHHHHHHHSEEEEEEEEEE-TTTTTHHHH CS
  Glyco_hydro_7 287 qFltddetskgelkeirrlyvqdgkvienskskleglkkvnsitdefCeaqkkvfgdedkfkkkgglkkmgealergmvLvlsiwddkaanmlwLd 382
                    qFlt++++++g+l+eirrlyvq+gkvi+nsk++++g+++++sitd+fC+aqk++fgd+++f+k+gglk+mg+++++gmvLv+siwdd+aa+mlwLd
     CDO73021.1 309 QFLTNNNQTSGQLSEIRRLYVQNGKVIANSKTNIPGMATYDSITDSFCNAQKQAFGDTNSFEKLGGLKQMGASFDKGMVLVMSIWDDHAAQMLWLD 404
                    ************************************************************************************************ PP

                    SBSSTTS-TTSTTTB-SSS-TTTT-HHHHHHHTTT-EEEEEEEEEEETTTTT CS
  Glyco_hydro_7 383 skyptdkdaskpgvargpCsatsgkpkevekekpdasvtfsnikvGeigstf 434
                    s+yp +kd+s+pgv+rgpC++tsg+p++ve+++pda+v+fsnik+G+igst+
     CDO73021.1 405 SDYPLNKDPSTPGVSRGPCPTTSGQPTDVESQSPDATVVFSNIKFGPIGSTY 456
                    ***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3260.82
//
Query:       CDO73022.1  [L=1663]
Description: hypothetical protein BN946_scf185007.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0023   17.6  36.8     0.0023   17.6  36.8   10.9 10  Filament    Intermediate filament protein
  ------ inclusion threshold ------
      0.011   15.7   1.3      0.011   15.7   1.3   12.6 14  Laminin_II  Laminin Domain II
      0.012   16.1   5.1      0.012   16.1   5.1   16.1 16  BST2        Bone marrow stromal antigen 2
        0.2   12.1 203.4       0.22   11.9  16.1   11.4 10  Fez1        Fez1


Domain annotation for each model (and alignments):
>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9  37.7         4   1.8e+04      59     273 ..      46     250 ..       9     259 .. 0.41
   2 ?  -15.5  35.1         4   1.8e+04      30     203 ..     160     355 ..     139     432 .. 0.70
   3 ?  -11.8  31.5         4   1.8e+04      23     257 ..     271     573 ..     265     605 .. 0.58
   4 !    6.0  15.7    0.0018       7.9     123     279 ..     538     695 ..     536     713 .. 0.78
   5 ?    2.9  12.0     0.015        66      19     243 ..     760     870 ..     739     881 .. 0.39
   6 !   17.6  36.8   5.2e-07    0.0023      66     286 ..     884    1107 ..     870    1111 .. 0.79
   7 !   15.5  25.7   2.2e-06    0.0096      95     280 ..     987    1165 ..     972    1170 .. 0.84
   8 ?    0.4  26.6     0.087   3.9e+02     113     276 ..    1072    1242 ..    1050    1254 .. 0.55
   9 !    9.8  17.6   0.00012      0.55     153     277 ..    1184    1311 ..    1167    1321 .. 0.77
  10 ?    1.2   4.4     0.049   2.2e+02      37     239 ..    1321    1381 ..    1313    1389 .. 0.52

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 4
                 XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
    Filament  59 lrkqldeltkerarlqleldn...lreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs.e 153
                 +++  d++    ++l+ e d+   l  +l++ ++ +++e n r+++E +l + +++l++      +L++ +esL    +     h++ +++ ++ ++  
  CDO73022.1  46 IKASRDDTL---DKLRREADRvtqLDVDLKRRNEELANERNTRQNAETALTTTQRKLKDSEKVAQELQSTIESLSTHANSTSAGHSK-LEQDNAALQtR 140
                 111111111...112222222000222222222222333555666666666666666665555556666666666555555555533.22222222212 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 154 qvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleer 252
                  + +e + ++k+  +e l  +++q  +  ++ r+++e+ ++  ++ l+++++   ++  +  ee++++  q+ + +    +l+++        + +e+r
  CDO73022.1 141 VRALERELQSKTH-AEELVLLQSQSASARQRRRSSSESSFR--VSALEQEVADLRANSVQQAEELQKASDQLTRSRDAFVQLQNE-------KTAMEKR 229
                 3444444333333.333444555555555555555555553..344444444444444444444444444444444444444443.......4444445 PP

                 HHHHHHHHHHHHHHHHHHHHH CS
    Filament 253 leaeleklqeklseleeelae 273
                 l++ele++q++l++ e++l+ 
  CDO73022.1 230 LHKELEQVQAALADREDDLRI 250
                 555555555555555555555 PP

  == domain 2  score: -15.5 bits;  conditional E-value: 4
                 XXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX................ CS
    Filament  30 Leakieeleekk..saevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrk.kyekelnkreevEaelkalr................ 109
                 L+++ +  ++++  s+e+s   ++ e+e+++lr++  ++++e +++  +l + r++  +l++ k + e ++ +e+E+  +al                 
  CDO73022.1 160 LQSQSASARQRRrsSSESSFRVSALEQEVADLRANSVQQAEELQKASDQLTRSRDAFVQLQNeKTAMEKRLHKELEQVQAALAdreddlrilrdsrgge 258
                 333333333332224444445566778888888777777777777777777777776666532556665555555555555547777777888**9**9 PP

                 ..XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament 110 ..kdldeatlarvdL.ekkvesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqea 203
                      +++ l+r++  ek+v  L++ela      +  ++ lq ++  +++l+e  +++  + ++ l+ + ++ e+ a ++r+++e+ y + +e+l+ a
  CDO73022.1 259 dmAAREAELLERLEEeEKRVAVLENELARSSGSRKRDLAMLQDELDrATMLLEDANNKAGETEARLAVLLREKEA-ALDERNQMEQEYARLVERLNVA 355
                 8767778899999762578999***********************989999998888888877777777666665.4567888999999888888754 PP

  == domain 3  score: -11.8 bits;  conditional E-value: 4
                 XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.......................... CS
    Filament  23 LEqenkeLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnl.reeledlrkkyeke.......................... 94 
                 LE+e+k++ +  +el    s +++++ ++ ++el+ +   l++++++   +++ l  l re+ + l ++++ e                          
  CDO73022.1 271 LEEEEKRVAVLENELARS-SGSRKRDLAMLQDELDRATMLLEDANNKAGETEARLAVLlREKEAALDERNQMEqeyarlverlnvadgwasnleksnae 368
                 566666555555555544.44455566677777777777777777766666666654313334444444444444777777777777777777777777 PP

                 .............................XXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X CS
    Filament  95 .............................lnkreevEaelkalr.......kdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs....e 153
                                               ++r+ + ++l+ l+       + l+++ +a +   +   +   e++ l+ + ++  ++ q++++     
  CDO73022.1 369 sslpspspktpdeatvammekllntierlRGERDGLRRDLEFLNaenrfavQSLEAKLVAATSAPATPTANPAEVNALRGHMQTYQEQAQRSARaavaL 467
                 777776666666666444444444443333333333333333336666666666666666666666666666666666655554444444444311224 PP

                 XXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 154 qvlvevdaarkld....Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlae 248
                  v+v+  +++  d    ++  ++e+ + +e+l +++ +  e   ++  ++++++ ++ ++al+ a++  + lr +i++le el++ + ++    a+la+
  CDO73022.1 468 AVVVQHSDEHASDifgrIQGLVQELAHTHERLFKTQSQLQE--CERAAQDMRQQLSSATQALNIAESHESGLRSTIERLENELSHERDAHTEKSAALAD 564
                 44444444555557777777888888888888776554433..35566778888888888888888888888888888888888888888888888888 PP

                 HHHHHHHHH CS
    Filament 249 leerleael 257
                 le rl+a+ 
  CDO73022.1 565 LEGRLAAAN 573
                 888877654 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0018
                 XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHH CS
    Filament 123 ekkvesLkeelaflkkvheeE...vkelqkqvseqvlvevdaarkld.Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakee 217
                  + +e L++el+  +  h e    +++l+ ++++  l  ++a+ + d L+ +   + ++ e  a+++ ++a++ + ++l+  ++  ++ +ea  + +  
  CDO73022.1 538 RSTIERLENELSHERDAHTEKsaaLADLEGRLAAANLALTNAEAGRDaLALAKTHLEQDLE-TARQELADADDRHAQQLNAFSSGKSNAGEA--ALRAH 633
                 56799*************9863336667777765555555556666656666666666666.467778888888888888877665555555..56788 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 218 itelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireema 279
                 i+el  +i+++++++  +++  a le +l+  eerl++  +++  + se+++ l+++r + +
  CDO73022.1 634 IKELEARIDRRTAQIGMHQHDIARLEMNLKLQEERLAEMTAEMDVAQSEKDAMLEDCRTTRD 695
                 *************************************9999999999999999998887654 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  19 kVraLEqenkeLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatl 117
                 +V  +E e ++L a+i+ l                                                                                
  CDO73022.1 760 RVSIMESERDALSAQISVLL------------------------------------------------------------------------------- 779
                 33333333333333333333............................................................................... PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXX..XX.......XXXXXXXXXXX CS
    Filament 118 arvdLekkvesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkld....Lteilkeiraqyeelaeknreeae..ew.......ykskleelqea 203
                                                                 d    L+++l +  + ye+l ++  + a+  e+        + +le+++ a
  CDO73022.1 780 ------------------------------------------------DerdrLARTLDDSTRAYEDLSQEHGRCADerEQtsaqtksLEVQLEQVSVA 830
                 ................................................123334444444444444444433222210022000001133333333333 PP

                 XXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 204 aeknsealrsakeeitelrrqiqsleieleslkkqkasle 243
                 ++  ++a  +a++++  lr +++s+  el  +++q asl+
  CDO73022.1 831 VRAAEDAKAAAESQLVSLRSELESKADELTTMQAQLASLH 870
                 3333333333344444444444444444444444444333 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 5.2e-07
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX CS
    Filament   66 ltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeat...larvdLekkvesLkeelaflkkvheeEvkelqkqvs..eqvlv 157 
                   ++e+a l+ +l+  r++l+d+  + ++ +++ + vE+elk    +l         r++ e   e L+ ela  k+ +eeE++ lq q++  ++ l 
  CDO73022.1  884 FAQEKAELETQLQGSRASLADVEGRHQETVAELKRVEEELKRAEDELSRHLsdsAIRSESE---ERLRTELARTKHQYEEEIASLQDQLKvlSHELA 977 
                  5799************************************988866654430002344444...56999********************66555555 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX-.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.. CS
    Filament  158 evdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaae..knsealrsa.keeitelrrqiqsleieleslkkqkasleaqlael.. 249 
                  e+   rk          r+  ee  ++ ++++e+   +  + l+ a++   + e+l++a ++ei+ l+ ++++ +i+le+    ++ l+a+ +e+  
  CDO73022.1  978 ETSRCRK-----DADASRQAAEEELQRTKQQLESHLAEVGDSLNAASRlqAELEDLKAAhENEIKALQARLDAISIDLEDAIRRRDELQASYEEAvl 1069
                  5554333.....335569999************999998888777665114456777661579****************999999888888888633 PP

                  .HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  250 .eerleaeleklqeklseleeelaeireemarqlreYq 286 
                    ++ + +l+++qek s+le+el+ ire  a++lr+ +
  CDO73022.1 1070 eSAERAGQLSDAQEKASSLETELTAIREAHAAELRDLD 1107
                  23456789***********************9999865 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 2.2e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXX CS
    Filament   95 lnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkldLteilk...eiraqyeelaeknree 188 
                   ++r+++E+el+  +++l+    +  d  +    L+ el+ lk  he+E+k lq+++ + ++++        L+ +++   e++a yee + ++ e 
  CDO73022.1  987 DASRQAAEEELQRTKQQLESHLAEVGDSLNAASRLQAELEDLKAAHENEIKALQARL-DAISID--------LEDAIRrrdELQASYEEAVLESAER 1074
                  468******************************************************.444444........4444432339**********99999 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXX-.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  189 aeewykskleelqeaaeknsealrsa.keeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemar 280 
                  a +   ++ +   ++ e++  a+r+a   e+ +l  ++ + ++el+++k +++ +eaq     + l++ +e+lq  + +l +e  + r++++ 
  CDO73022.1 1075 AGQLSDAQEKA--SSLETELTAIREAhAAELRDLDERLAKTTSELNAIKDSQSDTEAQQCQKVDDLSRTVEELQGRVIALTREADKYRADLDE 1165
                  99886665433..3444455555554157**********************************************************999865 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.087
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...........XXXXXXXXXXX...XXXXXXXXXXXXXXXXX CS
    Filament  113 deatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkld...........Lteilkeiraq...yeelaeknreeaeewyk 194 
                   e   + +d ++k  sL+ el   ++ h +E+++l ++++ ++  ++  + ++ d           L+++++e++       + a+k+r++++e   
  CDO73022.1 1072 AERAGQLSDAQEKASSLETELTAIREAHAAELRDLDERLAkTTSELNAIKDSQSDteaqqcqkvddLSRTVEELQGRviaLTREADKYRADLDE--- 1165
                  4444555788999999999999999999999999999986533333332233333447766666677777777765411134445555555543... PP

                  XXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  195 skleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeire 276 
                  +k++++q++ + +s++l+sa + ++e++  + + + el++++++ +   ++l     r+e+e  +lq + ++le+e++++++
  CDO73022.1 1166 EKVAHAQTK-DLSSSELHSATSKLEEAQAALAEIQRELSAVRAELEHATSSLV----RVEKEKLDLQYQATNLEAEVQRLKS 1242
                  344444333.3334445555555555555555555555555554444444443....4445555666666666666666664 PP

  == domain 9  score: 9.8 bits;  conditional E-value: 0.00012
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  153 eqvlvevdaarkldLteilkeiraqyee....laeknreeaeewykskleelqeaaeknsealrsakeeit.elrrqiqsleieleslkkqkaslea 244 
                  ++ ++e  +a   ++++ l+ +ra+ e+    l++ ++e+++ +y+   ++l+ ++++ ++  r + ++i+ ++ r++ +le+el++l++++ +l +
  CDO73022.1 1184 ATSKLEEAQAALAEIQRELSAVRAELEHatssLVRVEKEKLDLQYQ--ATNLEAEVQRLKSLQRLSISDIQyNSERHVSTLEAELQDLRNKCTALDK 1278
                  4445555555666666667777777775111145555666666665..57888888888888888888987468899******************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  245 qlaeleerleaeleklqeklseleeelaeiree 277 
                    + +e++l+++  ++++++++l +el+++r++
  CDO73022.1 1279 LAKSTEANLAMQTIQHEQTVASLKRELNTLRAQ 1311
                  *****************************9987 PP

  == domain 10  score: 1.2 bits;  conditional E-value: 0.049
                  XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   37 leekksaevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeel 133 
                  l+ek                                                                                             
  CDO73022.1 1321 LREK--------------------------------------------------------------------------------------------- 1324
                  4444............................................................................................. PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HH...HHHHHHHHHHH CS
    Filament  134 aflkkvheeEvkelqkqvseqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsake...eitelrrqiqs 227 
                                                                      ++e+ee  ++k+ e++e+ ++  e+l++ k+    i  l r++q+
  CDO73022.1 1325 ----------------------------------------------------NAEMEELLRAKCLEIEENDDRFIEMLKEKKKltnKIDSLTRKVQN 1369
                  ....................................................445555556666555555555555555544222255555555555 PP

                  HHHHHHHHHHHH CS
    Filament  228 leieleslkkqk 239 
                  l+++l +  +q+
  CDO73022.1 1370 LQVKLTAASEQA 1381
                  555555555554 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   4.5     0.018        79      11      86 ..      49     124 ..      42     133 .. 0.70
   2 ?    4.2   5.2    0.0093        42       2      68 ..      85     148 ..      84     166 .. 0.84
   3 ?   -1.7   4.0      0.58   2.6e+03      13      73 ..     182     243 ..     172     256 .. 0.52
   4 ?    1.8   1.5     0.051   2.3e+02      17      76 ..     294     353 ..     283     364 .. 0.88
   5 ?   15.7   1.3   2.5e-06     0.011       4      77 ..     477     550 ..     474     566 .. 0.85
   6 ?   -1.3   0.3      0.45     2e+03      19      70 ..     590     643 ..     573     664 .. 0.70
   7 ?   -1.9   0.2      0.68     3e+03      21      63 ..     636     680 ..     621     720 .. 0.49
   8 ?   -1.3   5.6      0.44     2e+03      27      90 ..     811     881 ..     786     885 .. 0.71
   9 ?    4.1   0.5      0.01        45      17      61 ..     886     930 ..     880     940 .. 0.89
  10 ?   -0.3   6.4      0.22   9.7e+02      10      81 ..     960    1031 ..     940    1056 .. 0.52
  11 ?    0.3   0.5      0.15   6.5e+02      11      71 ..    1035    1095 ..    1026    1098 .. 0.78
  12 ?    1.2   4.7     0.074   3.3e+02      17      69 ..    1101    1157 ..    1075    1179 .. 0.52
  13 ?    2.2  10.4     0.039   1.7e+02       2      73 ..    1206    1271 ..    1165    1294 .. 0.55
  14 ?    0.2   9.0      0.16   7.1e+02      23     112 ..    1295    1387 ..    1280    1396 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.. CS
  Laminin_II  11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeass 86 
                 +   +l++l   + ++ ++  +l++ n+++++  +  ++a +a+   +r+ k+ ek+a++L + +++l ++ +  s
  CDO73022.1  49 SRDDTLDKLRREADRVTQLDVDLKRRNEELANERNTRQNAETALTTTQRKLKDSEKVAQELQSTIESLSTHANSTS 124
                 5555566666666666677777777777777777778888888888888999999999988888888888776644 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0093
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TT CS
  Laminin_II   2 kelaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLekla 68 
                 +++a+ a+ t++  l++ ++++q+l+ t e+ls+ ++s    + k+++ n a+   ++ v+ Le+++
  CDO73022.1  85 RQNAETALTTTQRKLKDSEKVAQELQSTIESLSTHANSTSAGHSKLEQDNAAL---QTRVRALEREL 148
                 78999*****************************9999777777777777666...46666666665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.58
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX--TTTTTGG CS
  Laminin_II  13 kevleqlaplsqnlentkeklseinrsveetnek.vkdankairdArrsvkkLeklapqLld 73 
                 ++ ++ +a+l +n  +  e+l+++ +++ +  +  v+  n+ ++  +r  k+Le++   L d
  CDO73022.1 182 SALEQEVADLRANSVQQAEELQKASDQLTRSRDAfVQLQNEKTAMEKRLHKELEQVQAALAD 243
                 44455555555555555555555555554443321334444444444455555554444444 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.051
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHH CS
  Laminin_II  17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklk 76 
                 ++la l+ +l++    l+ +n+++ et++ +  + +  + A ++  ++e++  +L+++l+
  CDO73022.1 294 RDLAMLQDELDRATMLLEDANNKAGETEARLAVLLREKEAALDERNQMEQEYARLVERLN 353
                 678889999999999999999999999999999999999999999999999999999986 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 2.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHH CS
  Laminin_II   4 laaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklke 77 
                  a+++   ++   + la  +++l +t+++l+e +r ++ + +++++a++a++ A++  + L  ++++L++ l++
  CDO73022.1 477 HASDIFGRIQGLVQELAHTHERLFKTQSQLQECERAAQDMRQQLSSATQALNIAESHESGLRSTIERLENELSH 550
                 566666667777788888999***********************************************999875 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.45
                 XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.XXXXXXXXXXXXXXXX--TTTT CS
  Laminin_II  19 laplsqnlentkeklseinrs.veetnekvk.dankairdArrsvkkLeklapq 70 
                 ++ l+q+le  +++l  +++  +++ n+  + ++n + +  r  +k+Le  +++
  CDO73022.1 590 KTHLEQDLETARQELADADDRhAQQLNAFSSgKSNAGEAALRAHIKELEARIDR 643
                 567889999999999888765155555555555555566666677777776665 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 0.68
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXX CS
  Laminin_II  21 plsqnlentkeklseinrsveetnekvk..dankairdArrsvkk 63 
                 +l++++++  +++   + ++++ + ++k  +   a   A+  v +
  CDO73022.1 636 ELEARIDRRTAQIGMHQHDIARLEMNLKlqEERLAEMTAEMDVAQ 680
                 444444444444444444443332222211333333333333333 PP

  == domain 8  score: -1.3 bits;  conditional E-value: 0.44
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX--TTTTTG...GGHHHHHHHHHH...HHH CS
  Laminin_II  27 entkeklseinrsveetnekvkdankairdArrsv....kkLeklapqLl...dklkelkqleeassslsd 90 
                 e+t+++ ++++ ++e++   v++a  a + A+++     ++Le +a++L    ++l +l + +++++sl +
  CDO73022.1 811 EQTSAQTKSLEVQLEQVSVAVRAAEDAKAAAESQLvslrSELESKADELTtmqAQLASLHHSNSNRQSLEA 881
                 67888888888888888888888888888888877122234566666654222577777777777777665 PP

  == domain 9  score: 4.1 bits;  conditional E-value: 0.01
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsv 61 
                 + +a+l+++l+  +++l  +++  +et +++k   + ++ A+++ 
  CDO73022.1 886 QEKAELETQLQGSRASLADVEGRHQETVAELKRVEEELKRAEDEL 930
                 67899******************************9999999875 PP

  == domain 10  score: -0.3 bits;  conditional E-value: 0.22
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
  Laminin_II   10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkql 81  
                  e +++ ++ql+ ls +l +t+   + +++s +  +e+++  ++++++   +v +  + a +L + l+ lk  
  CDO73022.1  960 EEIASLQDQLKVLSHELAETSRCRKDADASRQAAEEELQRTKQQLESHLAEVGDSLNAASRLQAELEDLKAA 1031
                  334444555555555555555444444444444444444444444444444444444444444444444444 PP

  == domain 11  score: 0.3 bits;  conditional E-value: 0.15
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTT CS
  Laminin_II   11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqL 71  
                   +k+ ++ l ++s +le       e+++s ee   +  +   ++ dA+++ + Le ++  +
  CDO73022.1 1035 EIKALQARLDAISIDLEDAIRRRDELQASYEEAVLESAERAGQLSDAQEKASSLETELTAI 1095
                  5677888888888888888888888998877777777778889999999999999887655 PP

  == domain 12  score: 1.2 bits;  conditional E-value: 0.074
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX--TTT CS
  Laminin_II   17 eqlaplsqnlentkeklseinrsveetn....ekvkdankairdArrsvkkLeklap 69  
                  + l +l+++l +t ++l+ i++s   t+    +kv+d+++++++ +  v  L+++a+
  CDO73022.1 1101 AELRDLDERLAKTTSELNAIKDSQSDTEaqqcQKVDDLSRTVEELQGRVIALTREAD 1157
                  344555555566666666555554444311112344444444444444444444444 PP

  == domain 13  score: 2.2 bits;  conditional E-value: 0.039
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGG CS
  Laminin_II    2 kelaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLld 73  
                  ++ ++ a ++++ v++ + +l+ +  n++++++++++       +  + + +    +r v++Le ++++L +
  CDO73022.1 1206 RAELEHATSSLVRVEKEKLDLQYQATNLEAEVQRLKSL------QRLSISDIQYNSERHVSTLEAELQDLRN 1271
                  33344444555555555555554444444444444444......1124444444455555555555555555 PP

  == domain 14  score: 0.2 bits;  conditional E-value: 0.16
                  XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHT---E CS
  Laminin_II   23 sqnlentkeklseinrs...veetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARkaAnkikvs 112 
                  +q +  +k +l++++++    +e+ ++ ++  ++ ++ r +  ++e++ ++ ++ lke k+l ++  sl +++++++    +A ++A+   v+
  CDO73022.1 1295 EQTVASLKRELNTLRAQprlEDEIADLREKNAEMEELLRAKCLEIEENDDRFIEMLKEKKKLTNKIDSLTRKVQNLQVKLTAASEQAAATPVA 1387
                  3444555555555554411123455555677788899999*************************************9999999999876665 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4      0.36   1.6e+03      30      89 ..      19      78 ..      12      80 .. 0.63
   2 ?    5.3  12.2    0.0067        30      16      87 ..      82     153 ..      75     157 .. 0.93
   3 ?   -2.4   7.3       1.6   7.4e+03      51      90 ..     199     238 ..     168     250 .. 0.58
   4 ?   -1.4   3.3       0.8   3.6e+03      12      82 ..     220     285 ..     213     294 .. 0.50
   5 ?   -1.2   1.6       0.7   3.2e+03      21      79 ..     298     353 ..     293     356 .. 0.67
   6 ?   16.1   5.1   2.8e-06     0.012      13      87 ..     507     581 ..     472     585 .. 0.95
   7 ?    1.7   4.1     0.088   3.9e+02      19      88 ..     590     668 ..     587     677 .. 0.67
   8 ?   -0.2   0.1      0.35   1.6e+03      26      87 ..     733     794 ..     720     798 .. 0.87
   9 ?    5.0   9.1    0.0082        37      16      77 ..     814     875 ..     806     902 .. 0.86
  10 ?    4.3   6.5     0.014        61      20      86 ..     917     980 ..     900     985 .. 0.87
  11 ?    2.4   5.1     0.052   2.4e+02      20      85 ..     991    1053 ..     980    1059 .. 0.78
  12 ?   -1.2   1.7      0.72   3.2e+03      50      86 ..    1060    1096 ..    1051    1118 .. 0.62
  13 ?   -2.2   5.7       1.4   6.3e+03      17      82 ..    1083    1149 ..    1079    1165 .. 0.42
  14 ?    0.6   6.9      0.19   8.5e+02      24      79 ..    1186    1241 ..    1166    1249 .. 0.55
  15 ?    2.3   8.6     0.057   2.6e+02      13      90 ..    1267    1340 ..    1254    1341 .. 0.73
  16 ?    2.9   1.6     0.036   1.6e+02      57      89 ..    1342    1374 ..    1338    1382 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.36
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        BST2 30 qeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaev 89
                +++lr ++a  at      + +  L++ ka   + + k++   + +++L+  L+  ++e+
  CDO73022.1 19 KDQLRTKDAAYATLHGEYLKKELELNEIKASRDDTLDKLRREADRVTQLDVDLKRRNEEL 78
                566666666666666655555556666677777777777777777777777777766665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0067
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  16 rnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaea 87 
                 rn+ +  e  Lt +q +l++ e+ a+  ++t+++L+   +   a + k ++    lq  ++ L+ +Lq +  
  CDO73022.1  82 RNTRQNAETALTTTQRKLKDSEKVAQELQSTIESLSTHANSTSAGHSKLEQDNAALQTRVRALERELQSKTH 153
                 899999**************************************99999999****************8765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        BST2  51 kasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaeve 90 
                  + L+k  +q  + +    +lq+e + ++++L++ +++v+
  CDO73022.1 199 AEELQKASDQLTRSRDAFVQLQNEKTAMEKRLHKELEQVQ 238
                 3334444444444444455555555555555555555554 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  12 eqecrnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasL..ekekaqsqkqqakvqelqgeikkLnqkL 82 
                 ++e   +++ L ++L q q  l++ e++       +  L++s   e + a++ + +++++e ++ ++ L+++L
  CDO73022.1 220 QNEKTAMEKRLHKELEQVQAALADREDD-------LRILRDSRggEDMAAREAELLERLEEEEKRVAVLENEL 285
                 3333333444444444444444444444.......34444443114445555666666666666666666665 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  21 lLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLn 79 
                 +L+ +L +a   l++a+ +a    +t   L   L +++a   ++++  qe  + +++Ln
  CDO73022.1 298 MLQDELDRATMLLEDANNKA---GETEARLAVLLREKEAALDERNQMEQEYARLVERLN 353
                 68889999999888888885...456666666666666666666555666555555554 PP

  == domain 6  score: 16.1 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  13 qecrnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaea 87 
                 qec+   + + +qL  a + l+ ae   +   +t++ L++ L +e++ + ++ a + +l+g ++  n  L +aea
  CDO73022.1 507 QECERAAQDMRQQLSSATQALNIAESHESGLRSTIERLENELSHERDAHTEKSAALADLEGRLAAANLALTNAEA 581
                 89***************************************************************9999999987 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHHHHHHHHHHHHH....H.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  19 trlLerqLtqaqeslreaeaqaa....t.....cnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeae 88 
                 + +Le+ L  a+++l++a++  a    +      n     L+a +++ +a+  ++ a++   q +i++L+ +L+ +e+ 
  CDO73022.1 590 KTHLEQDLETARQELADADDRHAqqlnAfssgkSNAGEAALRAHIKELEARIDRRTAQIGMHQHDIARLEMNLKLQEER 668
                 5688999999999988877543311112111113444567888888888888888888888888888888888766665 PP

  == domain 8  score: -0.2 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  26 LtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaea 87 
                 ++q ++ l + + +  t  + v  Lk+    ++++     a++  l +e  +L+  L+d   
  CDO73022.1 733 IAQRRDVLVRSMLEGRTRREEVARLKQRVSIMESERDALSAQISVLLDERDRLARTLDDSTR 794
                 57888999999999999999999999999999999999999999999999999999998765 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  16 rnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikk 77 
                 + +t+ Le qL q    +r ae+  a+ ++ +v+L++ Le + ++   +qa++  l+  + +
  CDO73022.1 814 SAQTKSLEVQLEQVSVAVRAAEDAKAAAESQLVSLRSELESKADELTTMQAQLASLHHSNSN 875
                 567999*********************************************99999877654 PP

  == domain 10  score: 4.3 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  20 rlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdae 86 
                 + +e++L++a+++l +   + a  ++  + L+  L + k q +++   +  lq+++k L ++L +++
  CDO73022.1 917 KRVEEELKRAEDELSRHLSDSAIRSESEERLRTELARTKHQYEEE---IASLQDQLKVLSHELAETS 980
                 56899*********************************9996655...9**************9886 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.052
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2   20 rlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqda 85  
                  +  e++L++++++l++  a++    +    L+a Le  ka +++   +++ lq  +  +   L+da
  CDO73022.1  991 QAAEEELQRTKQQLESHLAEVGDSLNAASRLQAELEDLKAAHEN---EIKALQARLDAISIDLEDA 1053
                  55689999999999999999999999999999999999999544...4777777777766666665 PP

  == domain 12  score: -1.2 bits;  conditional E-value: 0.72
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2   50 LkasLekekaqsqkqqakvqelqgeikkLnqkLqdae 86  
                  L+as e+ + +s ++  ++ + q++  +L+ +L   +
  CDO73022.1 1060 LQASYEEAVLESAERAGQLSDAQEKASSLETELTAIR 1096
                  5666666666666666666666666666666655433 PP

  == domain 13  score: -2.2 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2   17 nvtrlLerqLtqaqes....lreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkL 82  
                  ++   Le +Lt  +e     lr+ +       +t  +L+a  + + + + +q +kv +l + +++L+ ++
  CDO73022.1 1083 EKASSLETELTAIREAhaaeLRDLDERL---AKTTSELNAIKDSQSDTEAQQCQKVDDLSRTVEELQGRV 1149
                  5556666666665553111133333333...334444444333333333334444444444444444332 PP

  == domain 14  score: 0.6 bits;  conditional E-value: 0.19
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2   24 rqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLn 79  
                   +L +aq  l+e + + ++    ++  ++sL + + ++ + q ++ +l+ e+++L+
  CDO73022.1 1186 SKLEEAQAALAEIQRELSAVRAELEHATSSLVRVEKEKLDLQYQATNLEAEVQRLK 1241
                  34555555555555555555555555555555555555555555555555555554 PP

  == domain 15  score: 2.3 bits;  conditional E-value: 0.057
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        BST2   13 qecrnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaeve 90  
                  q +rn+   L++ L+++ e   +  +q +  +qtv +Lk  L+  +aq + +  ++ +l+++++++++ L+ +  e+e
  CDO73022.1 1267 QDLRNKCTALDK-LAKSTEA--NLAMQTIQHEQTVASLKRELNTLRAQPRLE-DEIADLREKNAEMEELLRAKCLEIE 1340
                  566677666654.5444443..3456667799****************6655.89*************9999888876 PP

  == domain 16  score: 2.9 bits;  conditional E-value: 0.036
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        BST2   57 ekaqsqkqqakvqelqgeikkLnqkLqdaeaev 89  
                  + ++  +++++ ++l ++i +L+ k+q+ + ++
  CDO73022.1 1342 NDDRFIEMLKEKKKLTNKIDSLTRKVQNLQVKL 1374
                  555666788888888888888888888887665 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  19.5   0.00086       3.8      10     150 ..      13     154 ..      10     158 .. 0.52
   2 ?  -18.6  37.1         4   1.8e+04      30     147 ..     154     288 ..     122     476 .. 0.66
   3 ?    6.9  14.0    0.0018       7.9      38     160 ..     490     620 ..     437     625 .. 0.82
   4 ?    7.5   8.3    0.0011       5.1      35     124 ..     629     718 ..     621     738 .. 0.86
   5 ?    0.6  12.2      0.15   6.5e+02      61     172 ..     747     859 ..     731     867 .. 0.76
   6 ?    1.9   1.1     0.057   2.6e+02      31      65 ..     843     877 ..     838     889 .. 0.61
   7 ?    8.4  22.8   0.00059       2.6      30     144 ..     885    1008 ..     878    1033 .. 0.67
   8 ?    8.9  18.5   0.00043       1.9      27     170 ..    1030    1175 ..    1001    1176 .. 0.59
   9 ?   11.9  16.1     5e-05      0.22      16     147 ..    1185    1315 ..    1177    1319 .. 0.76
  10 ?    6.0   9.8    0.0033        15      28     111 ..    1300    1382 ..    1290    1395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00086
        Fez1  10 GEislLKqQLkdsqaevtqklseiva.......lkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelre 101
                  Ei  LK QL+   a  ++  +e+++       +ka+  ++  kl+++ +++++l+  l+ +++el +  n  q++++  ++++ k++  e+  +el++
  CDO73022.1  13 DEIRTLKDQLRTKDAAYATLHGEYLKkelelneIKASRDDTLDKLRREADRVTQLDVDLKRRNEELANERNTRQNAETALTTTQRKLKDSEKVAQELQS 111
                 588889999988877776666666651111111444444444555555555555555555555555555555555555555555555555555555555 PP

        Fez1 102 elselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqk 150
                 ++++ls++     ++s++a + + e ++ ++l+ +v  l++eL+ + ++
  CDO73022.1 112 TIESLSTH-----ANSTSAGHSKLE-QDNAALQTRVRALERELQSKTHA 154
                 44444433.....333333333333.55677788888888888876655 PP

  == domain 2  score: -18.6 bits;  conditional E-value: 4
        Fez1  30 lseivalkaqlrelrak...leekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa........... 114
                 ++e+v l++q   +r++    +e+  +++ le+++ +  ++  +  +elq+++++ +  r+   +l++e + + ++l++  ++ + a            
  CDO73022.1 154 AEELVLLQSQSASARQRrrsSSESSFRVSALEQEVADLRANSVQQAEELQKASDQLTRSRDAFVQLQNEKTAMEKRLHKELEQVQAALadreddlrilr 252
                 456666666544333330003333334555555555555555555556666666666666666666666665555555533332222233333344444 PP

        Fez1 115 ...............lesdeakaqrqeaeeleelkreverlraeLkee 147
                                l            e+lee++++v+ l++eL+  
  CDO73022.1 253 dsrggedmaareaelL------------ERLEEEEKRVAVLENELARS 288
                 4443333322222221............22333333333333333332 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0018
        Fez1  38 aqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.......lesdeakaqrqe.ae 128
                  +l  ++++l +++++++e+e ++++  ++l    + l+ ++s+++ lr ++e+le+el++ r++ +e+s+  ++ +       l+ ++a+a r++ a 
  CDO73022.1 490 QELAHTHERLFKTQSQLQECERAAQDMRQQLSSATQALNIAESHESGLRSTIERLENELSHERDAHTEKSAALADLEgrlaaanLALTNAEAGRDAlAL 588
                 556667788888889999999999999999999999999999999999999999999999999988887666555557777776666666666666456 PP

        Fez1 129 eleelkreverlraeLkeerqkkeeqassFeq 160
                 + ++l++++e  r+eL+   +++ +q ++F +
  CDO73022.1 589 AKTHLEQDLETARQELADADDRHAQQLNAFSS 620
                 67889999**************9999999975 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0011
        Fez1  35 alkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqr 124
                 al+a+++el+a+++++ ++i  +++ +   +++l+  e++l+++++e ++ + + +++ e+++ +r++  e+ ++ +e +++ d++++ r
  CDO73022.1 629 ALRAHIKELEARIDRRTAQIGMHQHDIARLEMNLKLQEERLAEMTAEMDVAQSEKDAMLEDCRTTRDQRDEALRRCDELEEALDAVEQAR 718
                 79**************************************************99999999******999988877777665555544444 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.15
        Fez1  61 leektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassF 158
                  +++ +e+ +++++++ ++se + l+ +++ l +e  +l ++l ++++  e+ + ++ + a +++q++ ++++l+ ++e++  +++  +++k + +s+ 
  CDO73022.1 747 GRTRREEVARLKQRVSIMESERDALSAQISVLLDERDRLARTLDDSTRAYEDLSqEHGRCADEREQTSAQTKSLEVQLEQVSVAVRAAEDAKAAAESQL 845
                 578999999999999999********9999999999999999999776655544256667777888889999999999999999998888777766666 PP

        Fez1 159 eqERrtWqeeKekV 172
                  + R   ++  +  
  CDO73022.1 846 VSLRSELESKADEL 859
                 55555555555555 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.057
        Fez1  31 seivalkaqlrelrakleekeeeikeleesleekt 65 
                 s +v+l+++l     +l++ ++++ +l++s ++++
  CDO73022.1 843 SQLVSLRSELESKADELTTMQAQLASLHHSNSNRQ 877
                 45666666666666666666666666666555543 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.00059
        Fez1   30 lseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa............ 114 
                  ++e  +l +ql+  ra+l + e + +e+ ++l+  ++el++ e+el+r+ s++ + +e  e+l +el++++++++e  ++ +++             
  CDO73022.1  885 AQEKAELETQLQGSRASLADVEGRHQETVAELKRVEEELKRAEDELSRHLSDSAIRSESEERLRTELARTKHQYEEEIASLQDQLkvlshelaetsr 981 
                  567788999****************************************888888888888888888888887777554443333455544433322 PP

        Fez1  115 ..lesdeakaqrqeaeeleelkreverlraeL 144 
                    +   +a a rq   + eel+r+ ++l+++L
  CDO73022.1  982 crK---DADASRQ--AAEEELQRTKQQLESHL 1008
                  220...1122222..22333333333333333 PP

  == domain 8  score: 8.9 bits;  conditional E-value: 0.00043
        Fez1   27 tqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekl.eeelkelreelselsleeeeaa........ 114 
                  ++  +ei al+a+l  ++ +le+  ++ +el++s+ee  le  +   +l+ ++++a+ l+ +++++ e+  +elr+ l e                 
  CDO73022.1 1030 AAHENEIKALQARLDAISIDLEDAIRRRDELQASYEEAVLESAERAGQLSDAQEKASSLETELTAIrEAHAAELRD-LDER-------Lakttseln 1118
                  2344555566666666666666666666666666666666655555566555555555555554441233334443.2222.......123333344 PP

        Fez1  115 .lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassFeqERrtWqeeKe 170 
                   ++ +++ ++ q+ +++++l+r+ve+l++++    ++ ++ +++ ++E+   ++ K+
  CDO73022.1 1119 aIKDSQSDTEAQQCQKVDDLSRTVEELQGRVIALTREADKYRADLDEEKVAHAQTKD 1175
                  4444444566777899**************99999999999999**99998888886 PP

  == domain 9  score: 11.9 bits;  conditional E-value: 5e-05
        Fez1   16 KqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk..kseaellrekvekleeelkelreelselslee 110 
                   + L ++qa +++   e+ a++a+l  ++++l + e+e  +l+ ++++ ++e++++++ lqr   ++ + + + +v++le+el++lr++ ++l + +
  CDO73022.1 1185 TSKLEEAQAALAEIQRELSAVRAELEHATSSLVRVEKEKLDLQYQATNLEAEVQRLKS-LQRLsiSDIQYNSERHVSTLEAELQDLRNKCTALDKLA 1280
                  5689999999999999999999999999999999999999999999999999999875.55553333344455568999999999999998866554 PP

        Fez1  111 eeaalesdeakaqrqeaeeleelkreverlraeLkee 147 
                  +++  e++ a +  q+++++++lkre++ lra+ ++e
  CDO73022.1 1281 KST--EANLAMQTIQHEQTVASLKRELNTLRAQPRLE 1315
                  444..44444444555678999999999999876655 PP

  == domain 10  score: 6.0 bits;  conditional E-value: 0.0033
        Fez1   28 qklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleee 111 
                  +   e+ +l+aq r l+ ++ +  e++ e+ee l+ k le+e+ ++++ ++ +e++ l +k+++l +++++l+ +l+++s++++
  CDO73022.1 1300 SLKRELNTLRAQPR-LEDEIADLREKNAEMEELLRAKCLEIEENDDRFIEMLKEKKKLTNKIDSLTRKVQNLQVKLTAASEQAA 1382
                  44578889999988.677788888888999999****************************************99999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3095  (0.172625); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                       223  (0.0124379); expected 17.9 (0.001)
Passed Fwd filter:                       132  (0.00736237); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 5.90u 0.45s 00:00:06.35 Elapsed: 00:00:01.13
# Mc/sec: 4467.78
//
Query:       CDO73023.1  [L=339]
Description: hypothetical protein BN946_scf185007.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-29  101.3   0.0    8.8e-29  101.2   0.0    1.0  1  DAO              FAD dependent oxidoreductase
     0.0079   15.5   0.0      0.011   14.9   0.0    1.2  1  Thi4             Thi4 family
  ------ inclusion threshold ------
      0.015   15.8   0.0       0.04   14.5   0.0    1.7  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.018   15.2   0.1      0.043   14.1   0.1    1.6  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.033   13.8   0.0      0.056   13.1   0.0    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.035   14.3   0.0       0.11   12.8   0.0    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.075   13.1   0.0       0.14   12.2   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.11   11.7   0.0        1.9    7.6   0.1    2.3  3  FAD_binding_3    FAD binding domain
       0.14   12.1   0.0        0.2   11.5   0.0    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.16   11.4   0.0       0.47    9.9   0.0    1.7  2  Glu_dehyd_C      Glucose dehydrogenase C-terminus


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   4.9e-32   8.8e-29       2     333 ..      13     337 ..      12     339 .] 0.74

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 4.9e-32
                 EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTS.SGGGSSEEEEESSS....STHHSTHHHHHHHHHHH.HHHHHHHHHHSSTTSEEEEEEEEEES CS
         DAO   2 vviiGGGiiGlstAyeLarrg...Vtllekgdiags.gaSgrnsgllhsgl....rylpeaselarlsleal.eelreleeelgididyrrtGllslaa 91 
                 vv+ G+G+iGl++A+ L++     + ++ ++  +    +   +s +  + +        ++++++++ + ++ ++++ +   l+       +  +++++
  CDO73023.1  13 VVVLGAGVIGLTIAHVLSKDArykIKIVARD-MPEDlDSQAFASPWAGANWspmgT---YNERIYKWEKTTYdKFWDMIPTGLA----ISSPSRVFYGE 103
                 9****************9874578*******.777536666666666666653323...345999******7466688886544....56677788875 PP

                 SHHHHHHHHHHHHHHHHTTT.TEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEE CS
         DAO  92 deeelealdkllallleagl.daelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpge 189
                 +  +l++l  +++ l    + d ++ld++e+       ++ ++++++ +   v+p +++++l +++ a+Gve++++ +v  l e    ++ +  +  g 
  CDO73023.1 104 GT-NLDEL--WYKTL----VrDFRILDKDELP------ANMKAGVGFQT-VSVCPDAYLPWLKSELLARGVEFIRR-RVFTLGE----AAAL--A--GP 179
                 43.36655..66653....32669****8443......35689999999.99***********************9.8877733....4455..2..43 PP

                 EEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE..TTSEEEE.EESSEEETTCSSTSCSHHH CS
         DAO 190 ndaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr..kdgrvlv.Ggtadeesgdddpevdeed 284
                 n     ++na+G++++ l+   +  d+ + p+rgq +v+++++     ++   +++ ++ddg  +y++pr  ++g + + Gg + + +++d+ ++++ed
  CDO73023.1 180 N---GVLINATGLGARsLI---GLEDKDVFPIRGQTVVIDNPKV----HEFMCTELTNSDDGNATYIIPRpsPNGFTTIlGGKY-QKDNWDT-SFSAED 266
                 2...45*********9777...5447788**********66544....2344455559***********977778666549987.8888888.****** PP

                 HHHHHHHHHHHSGGG....CGEEEEEEEEEEETTSSEEEEEEE..................TEEEEEEEEE CS
         DAO 285 idellealrklfPql....gdvlrkwaGlrplpdglpligetp..................gvkglylatG 333
                 ++ ++e++++l P++     ++lr+ +Glrp + g+p +  +                   g+  +++a+G
  CDO73023.1 267 AEGIIERCAALAPAIkdpeTRILRHNVGLRPARRGGPRVEAEKldlpvkskwlteelhgkqGTVLVVHAYG 337
                 **************633445599********9999999988446676666666666665443334555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.3e-06     0.011      16      50 ..       9      43 ..       1      46 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.3e-06
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailers 50
                  + vv+ GaG  GLt a++l+k+   k+ i+ r 
  CDO73023.1  9 SSTQVVVLGAGVIGLTIAHVLSKDARYKIKIVARD 43
                5689********************99999998775 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.2e-05      0.04       2      30 ..      13      42 ..      12      51 .. 0.89
   2 ?   -3.6   0.0        10   1.8e+04      45      59 ..     150     164 ..     149     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
                EEEECSSHHHHHHHHHHHH.TTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgalae.lgkkVtvver 30
                vvv+G+G+igl  A +l++  + k+++v r
  CDO73023.1 13 VVVLGAGVIGLTIAHVLSKdARYKIKIVAR 42
                8****************7758899999987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 10
                 HHHHHHHHTTEEEEC CS
   Pyr_redox  45 ilqeklekngievll 59 
                 +l+ +l ++g+e++ 
  CDO73023.1 150 WLKSELLARGVEFIR 164
                 567788889999986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.4e-05     0.043       1      24 [.      15      39 ..      15      44 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                   EE--SHHHHHHHHHHHCC.TEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvll 24
                   ++GaG+ Gl++A+ L+k+ ++++ +
     CDO73023.1 15 VLGAGVIGLTIAHVLSKDaRYKIKI 39
                   89***************77888876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.056       1      30 [.      13      43 ..      13      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
                EEEES-SHHHHHHHHHHHH.HTHCEEEE-SC CS
        ApbA  1 iailGaGaiGsllaakLak.agadvtlilrs 30
                +++lGaG iG ++a+ L+k a +++ +++r+
  CDO73023.1 13 VVVLGAGVIGLTIAHVLSKdARYKIKIVARD 43
                689****************9*******9997 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-05      0.11       1      33 [.      13      43 ..      13      55 .. 0.88
   2 ?   -2.6   0.0       3.4   6.2e+03      45      74 ..     301     333 ..     283     337 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESS CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrs 33
                     v+++GaG +G  +a++l++   +  +i ++ r+
       CDO73023.1 13 VVVLGAGVIGLTIAHVLSKDARY--KIKIVARD 43
                     89*********************..78887776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.4
                      TTTCEEEEE--TTTHHHHHHHHHTTS...SEEE CS
  Sacchrp_dh_NADP  45 lgvrfeaialdaenyeavLaallkeg...dlvv 74 
                       g+r+ea++ld   +++ L++ l ++    lvv
       CDO73023.1 301 GGPRVEAEKLDLPVKSKWLTEELHGKqgtVLVV 333
                      688899999998888888888776665444555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.7e-05      0.14       9      46 ..       7      44 ..       2      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.7e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46
                  + ++ +v+++GaG ++  +a+ L++    k+ ++ R++
    CDO73023.1  7 RDSSTQVVVLGAGVIGLTIAHVLSKDARYKIKIVARDM 44
                  557899******************999999*****986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0011       1.9       2      22 ..      11      31 ..      10      45 .. 0.92
   2 ?   -2.9   0.0       1.7   3.1e+03     246     298 ..     125     179 ..     122     182 .. 0.69
   3 ?    1.3   0.0     0.093   1.7e+02     192     257 ..     212     276 ..     191     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                   EEEEEE--SHHHHHHHHHHHH CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLse 22
                   t+V++ GaG  Gl+ a++Ls+
     CDO73023.1 11 TQVVVLGAGVIGLTIAHVLSK 31
                   89*****************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
                    HHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEES..SSEETTEEE-GGGTEEE-S CS
  FAD_binding_3 246 eevkarlreivgektldveieevsawtvaqrvae..kyrkgrvflaGDAaHihpP 298
                    +e+ a++++ vg +t+ v ++ +  w  ++ +a+  ++ + rvf  G Aa    P
     CDO73023.1 125 DELPANMKAGVGFQTVSVCPDAYLPWLKSELLARgvEFIRRRVFTLGEAAALAGP 179
                    6667777777777777777777777777777776224556699999999876666 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.093
                    EEC.-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHT CS
  FAD_binding_3 192 fda.dlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivg 257
                    +d  ++ +++   +l  s++ +   +iP+ +  + f+ ++  +++k+++++ f+ e++  ++++  +
     CDO73023.1 212 IDNpKVHEFMCT-ELTNSDDGNATYIIPRPS-PNGFTTILGGKYQKDNWDTSFSAEDAEGIIERCAA 276
                    444444444444.66777777777999*999.9999*********************9998887655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011       0.2       1      31 [.      12      43 ..      12      58 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                EEEEE--SCCHHHHHHHHHHT.T-EEEEE-S- CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasa.gleVvlvdis 31
                +v v+GaG++G  ia+v+ +   +++++v ++
  CDO73023.1 12 QVVVLGAGVIGLTIAHVLSKDaRYKIKIVARD 43
                699**************976546666666553 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00026      0.47      32      68 ..      11      45 ..       2      53 .. 0.77
   2 ?   -2.1   0.0       1.3   2.3e+03      80     111 ..     159     190 ..     131     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00026
  Glu_dehyd_C 32 esalvlGaGslGLLalalleaeerglervyvlgrrdr 68
                 ++++vlGaG +GL  + +l++ + +++ + +++r   
   CDO73023.1 11 TQVVVLGAGVIGLTIAHVLSK-DARYK-IKIVARDMP 45
                 5789*********99888985.67786.888887544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
  Glu_dehyd_C  80 GatYvdsretpvdeipeaseemdlvvEaTGsa 111
                  G  ++  r  ++ e ++   +  +++ aTG  
   CDO73023.1 159 GVEFIRRRVFTLGEAAALAGPNGVLINATGLG 190
                  77788888888888888889999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2543.12
//
Query:       CDO73024.1  [L=238]
Description: hypothetical protein BN946_scf185007.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1756.05
//
Query:       CDO73025.1  [L=170]
Description: hypothetical protein BN946_scf185007.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 1136.85
//
Query:       CDO73026.1  [L=797]
Description: hypothetical protein BN946_scf185007.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-13   49.3   0.0    5.9e-13   48.6   0.0    1.3  1  Transposase_21  Transposase family tnp2
  ------ inclusion threshold ------
      0.011   14.9   0.3      0.022   14.0   0.3    1.5  1  Plavaka         Plavaka transposase
      0.066   12.8   0.0       0.13   11.9   0.0    1.4  1  DUF4218         Domain of unknown function (DUF4218)
        3.3    8.1   4.4        2.9    8.3   0.3    2.6  3  NUC130_3NT      NUC130/3NT domain
        6.3    7.9   8.5        8.3    7.5   7.1    1.9  1  Iwr1            Transcription factor Iwr1


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.6e-16   5.9e-13      28     189 ..     255     415 ..     243     432 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.6e-16
  Transposase_21  28 rnvrlglatdGfnPfgs.msssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkd.idvylePlvddlkelweeGvetydalkeekfnl 120
                       + ++l+ d f   +s +s sys  p+ l   nlPP l     n+lls++ipGpk+ + d  + +l+ lv +l++lw++G+      + e  ++
      CDO73026.1 255 IRIGVALGLDWFSYLRSlISPSYSSCPISLNIVNLPPSLRYRAGNLLLSMIIPGPKESNPDqTQGFLKILVSELIRLWRDGIVLPTHAHPEGRRI 349
                     3444555667777777625889*********************************9876552688*****************99999999***** PP

  Transposase_21 121 ravllwtindfPalstlsGl.stkgklacvtCkknteslrlkngkklcylghrrfleanhrlrrkkksfd 189
                     r++l+    d Pa  +++G  s k ++ c  C  +  ++ l+     +++ h    +++ + r   +++ 
      CDO73026.1 350 RVILVGVFCDKPAAHKVAGFgSHKHTFFCTRCWISQGKKALR----EAFMPHGFQERTDRHHRLLMQQYR 415
                     *******************845678899****9999888888....566666544444444444444443 PP

>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   6.2e-06     0.022     188     321 ..     322     467 ..     318     471 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.2e-06
     Plavaka 188 arilepLkeagkkgvvm.tcadghvrrvipilaayiaDypEqvlvaci....vqgwCpkctakkke..lgdl...eeselrtreetlelleeaadelkk 276
                 +++++ L +  ++g+v+ t a+   rr+ +il+ + +D p    va+      +  C +c +++ +  l ++   + ++ rt ++++ l+++ ++  ++
  CDO73026.1 322 KILVSELIRLWRDGIVLpTHAHPEGRRIRVILVGVFCDKPAAHKVAGFgshkHTFFCTRCWISQGKkaLREAfmpHGFQERTDRHHRLLMQQYREA-QT 419
                 5667777777777777724566788**********************9544223369999888655114453333446888888877777777654.33 PP

     Plavaka 277 lwkeyglkgviepF...wedlpradihelltpDlLHqlikgvfkdHlv 321
                   ++ +  +         ++lp+ d  +++  D +H l  g++k H  
  CDO73026.1 420 DKDREEHASAFATRwseLARLPYFDFQRMVVVDPMHNLFLGLVKTHFY 467
                 333333333333330115689*************************86 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.13       6      83 ..     658     734 ..     654     746 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
     DUF4218   6 lkldelekleeeiaitlcklEkiFppaffdvmvHLivHlvdeaklaGPvhyrnmypveRkllvlkkyvrnkarpeGsi 83 
                 ++  +l + e+ i +   +l  ++         H + H ++ ++  GP+   + + +eR  ++lk+y  n  +  G i
  CDO73026.1 658 ISEAQLAQAEQLIREYCIELVELYGADVIRPNHHYATHTAEFIRDYGPMRGFWTFIFERLNKILKSYRTN-NHEGGEI 734
                 56678888889999999999999999999999*********************************99555.4444444 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3    0.0008       2.9      24      47 ..     103     126 ..     100     127 .. 0.89
   2 ?    0.1   0.1      0.29     1e+03      13      26 ..     189     202 ..     181     206 .. 0.80
   3 ?   -4.0   0.0         5   1.8e+04       7      17 ..     690     700 ..     690     701 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0008
  NUC130_3NT  24 LlehhsvLhpdlRkklvqaLvlLR 47 
                  +  hs+L p lR +l  +L lLR
  CDO73026.1 103 VELGHSSLVPSLRTTLTSCLALLR 126
                 566799*****************9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.29
  NUC130_3NT  13 tkefpqeLselLle 26 
                 +k+++++L+ lLl+
  CDO73026.1 189 AKTLSEQLAALLLQ 202
                 489*********98 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5
  NUC130_3NT   7 hcYpketkefp 17 
                 h+Y  +t+ef 
  CDO73026.1 690 HHYATHTAEFI 700
                 7999****996 PP

>> Iwr1  Transcription factor Iwr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.1    0.0023       8.3      24      65 ..     615     651 ..     596     654 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0023
        Iwr1  24 kdigvlvieeedeelldafaeddedsdeeededdeDsNaEdn 65 
                 ++   +v+e++d     a a+ d++sd+e+d d++D N+Ed 
  CDO73026.1 615 EKAKNMVLEMDD-----AGAHLDDESDHEWDGDEDDINDEDA 651
                 333333333333.....34457899999************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 4934.15
//
Query:       CDO73027.1  [L=653]
Description: hypothetical protein BN946_scf185007.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28    9.2  11.0       0.44    8.6  11.0    1.2  1  AF-4      AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  11.0   2.5e-05      0.44     443     504 ..     186     246 ..     173     289 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 2.5e-05
        AF-4 443 ekpksssapssapqstpesvesahsssaeSeSsSeSeSSSeSDSesEssssdseanepprta 504
                 e  ++ss+ +   q ++++  s +s+s++ +Ss +  S S+S+S++Ess sd +a+ ++ + 
  CDO73027.1 186 EHERTSSHRVV-GQRRQRQRTSSESESEDAGSSLQESSDSGSESDTESSVSDWDAEAESLSD 246
                 33333333333.34444445566666666666544445567777777777777666555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4182.03
//
Query:       CDO73028.1  [L=314]
Description: hypothetical protein BN946_scf185007.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2271.98
//
Query:       CDO73029.1  [L=253]
Description: hypothetical protein BN946_scf185007.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.8   0.0      0.042   14.1   0.0    1.3  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-06     0.042      12     102 ..      57     156 ..      51     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-06
                 -EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST...........TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-..CGGGHHHHHHHHHHHT-H CS
         BTB  12 DvtlvvgdgkefkahkavLaarSpyFkalftsk...........eieessvseielddvepeafealLefiYtgeleit..seenleelLaaadllqip 97 
                 D  l +     f +h+  L+ +S++F   f+ +           + ++     ++++d ++++f+ +L+ +Y g ++ +  s +++++l ++ +++  p
  CDO73029.1  57 DFHLGAS-SMAFCVHRGLLSRHSDVFGLSFEAGlpnpttadilgTVADCP--IVRISD-SYHDFKCFLRAVYDGYVPGDvlSFAEAAALVRTGHKYCAP 151
                 5556666.68899********************88887666654444444..444455.899************9998899999999999999999988 PP

                 HHHHH CS
         BTB  98 rlkka 102
                  ++++
  CDO73029.1 152 LVQNV 156
                 87776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1800.87
//
Query:       CDO73030.1  [L=1279]
Description: hypothetical protein BN946_scf185007.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.11   11.9   0.1       0.22   10.9   0.1    1.4  1  DNA_pol_viral_C  DNA polymerase (viral) C-terminal domain


Domain annotation for each model (and alignments):
>> DNA_pol_viral_C  DNA polymerase (viral) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.2e-05      0.22     178     202 ..     796     820 ..     781     832 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.2e-05
  DNA_pol_viral_C 178 vyvpsklnpaddpsrgrlglyrall 202
                       yv s+ npad+psrg  +  + ll
       CDO73030.1 796 RYVQSAANPADGPSRGVYPSTTLLL 820
                      69**************999866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 8157.49
//
Query:       CDO73031.1  [L=496]
Description: hypothetical protein BN946_scf185007.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.046   13.7   0.1       0.41   10.7   0.0    2.5  2  DUF1932   Domain of unknown function (DUF1932)
      0.098   12.8   0.9       0.27   11.3   0.0    1.9  2  UPF0242   Uncharacterised protein family (UPF0242) N-terminus
          7    7.2   7.6         17    5.9   0.5    2.8  3  ZapB      Cell division protein ZapB


Domain annotation for each model (and alignments):
>> DUF1932  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   1.6e+03      10      54 ..     103     146 ..     100     159 .. 0.60
   2 ?   10.7   0.0   6.8e-05      0.41       9      41 ..     372     405 ..     364     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
                 HHHHHHHHS...STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
     DUF1932  10 lldeleesl...pallaraergltgmppkAyRwveEMeeiaetlaeeg 54 
                 l+++le+sl    +l++++e    ++ + ++R    + +i+++++++g
  CDO73031.1 103 LTRKLEKSLgqtADLREFVEDIADRVGEQGQR----VAAIEDMIEDQG 146
                 55556666555556666666666666666666....334555555555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHS.STHHHHHHHHHHHHHHHHHHHHH CS
     DUF1932   9 elldeleesl.pallaraergltgmppkAyRwve 41 
                 ++ del+e+   a +a+a+  l g + +A+R+ e
  CDO73031.1 372 DIFDELDEYIsAAQEAQADESLNGNTHHARRRGE 405
                 56799****97777788***************75 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.6e-05      0.27     108     162 ..      89     146 ..      72     155 .. 0.78
   2 ?   -0.8   0.2      0.24   1.4e+03      84     131 ..     249     295 ..     220     305 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
     UPF0242 108 keeelerlkeenqqLqekleaiaedfeelklele...eqLaekqellqeyqetieeqr 162
                  e    rl++en+qL  kle++  + ++l+ ++e   +++ e+ +++   + +ie+q 
  CDO73031.1  89 LEGMTVRLQQENAQLTRKLEKSLGQTADLREFVEdiaDRVGEQGQRVAAIEDMIEDQG 146
                 5556679**************9886666555555111788999999999999999995 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.24
     UPF0242  84 lktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae 131
                 l+++e+ le + +   ++ +el  k+e+ +r ++ ++  + ++   a+
  CDO73031.1 249 LDVIEDGLETSYNTLAKRYRELRDKDEATRRTTRMQNRRRRRKVT-AA 295
                 667777778777888888888888888877777655544433333.33 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.5    0.0029        17      28      53 ..      94     119 ..      84     139 .. 0.58
   2 ?    4.6   0.4    0.0075        45       8      41 ..     255     288 ..     252     304 .. 0.74
   3 ?   -3.0   0.0       1.8   1.1e+04       3      16 ..     371     384 ..     369     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0029
        ZapB  28 eeLkeeneelkeenreleeeneqlke 53 
                  +L++en++l+++ ++   +   l+e
  CDO73031.1  94 VRLQQENAQLTRKLEKSLGQTADLRE 119
                 45555555555555555444444443 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0075
        ZapB   8 qLEskiqkaidtitlLqmeieeLkeeneelkeen 41 
                  LE++++++  ++++L+ + e+ ++  +  +++ 
  CDO73031.1 255 GLETSYNTLAKRYRELRDKDEATRRTTRMQNRRR 288
                 6999999999999999999888887766555544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.8
        ZapB   3 lelLeqLEskiqka 16 
                  +++++L + i++a
  CDO73031.1 371 TDIFDELDEYISAA 384
                 67899999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3345.82
//
Query:       CDO73032.1  [L=1002]
Description: hypothetical protein BN946_scf185007.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-08   32.1   0.0    1.3e-07   31.0   0.0    1.5  1  Transposase_21  Transposase family tnp2
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.026   14.1   0.0    1.3  1  DUF4218         Domain of unknown function (DUF4218)
      0.036   13.6   0.5       0.14   11.7   0.0    1.9  2  DUF1258         Protein of unknown function (DUF1258)


Domain annotation for each model (and alignments):
>> Transposase_21  Transposase family tnp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.3e-11   1.3e-07      47     153 ..     514     622 ..     484     656 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.3e-11
  Transposase_21  47 ssysvWpvllipynlPPWlclkqsnfllsllipGpksPgkd.idvylePlvddlkelweeGvetydalkeekfnlravllwtindfPalstlsGl 140
                       ysv  v +   n P  + + ++  +l  +ipGp++P +d ++  l Pl+++l++l+  G++   +  +e   l+a l    +d Pa  +l Gl
      CDO73032.1 514 GGYSVGAVYITICNNPRAIRFRREETILYCVIPGPQEPTTDhLNSILLPLIKELQRLYG-GISFQISDDDEPELLHAFLNNITSDLPAAHKLNGL 607
                     4699**********************************9875899*************9.99988888888888999999999***********9 PP

  Transposase_21 141 stkgkla..cvtCkk 153
                       ++ +a  c +C+ 
      CDO73032.1 608 RGHTSNAfmCDMCDA 622
                     877665533888876 PP

>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.4e-06     0.026      35     101 ..     882     953 ..     862     964 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-06
     DUF4218  35 dvm..vHLivHlvdeaklaGPvhyrnmypveRk...llvlkkyvrnkarpeGsiaEayvaeealtfcsrylk 101
                  +m   H+++Hl   +   GPv++ + y++eR    l +l++  ++  ++e +++ + ++   l  ++++l+
  CDO73032.1 882 HLMpyFHIMMHLWFWILFLGPVYAWWCYAFERNngfLARLRHNGHTGGQLEATMMRGWTKSMLLFELIEHLD 953
                 444324788888888899**************6333777777777788888888877776666555555555 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.0      0.25   1.5e+03     189     245 ..     137     193 ..     127     197 .. 0.77
   2 ?   11.7   0.0   2.3e-05      0.14     119     206 ..     521     617 ..     511     626 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.25
     DUF1258 189 PakrslfGlrahqsekscffclstgtlykkegeerkesrkGsltvedslngvnGfke 245
                  a rs +G +  +   +c   + + t    + ++ +++r+G      s +++ Gf+ 
  CDO73032.1 137 FASRSDYGAQPRSQMPACARPTLSRTRSSSQTRRSSRTRSGARSRPASSHSRSGFQG 193
                 46777777777777778887777778777778888889*****************86 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.3e-05
     DUF1258 119 vslilvdlPvaemqkstnillegivecsenPstalWnallPlilsdlesktGkvkkv.k.......fkarivtltadqPakrslfGlrahqsek.sc 206
                 v +++++ P+a   +  + +l  ++ + ++P+t   n++l  ++ +l+   G ++   +       ++a +  +t+d Pa   l Glr h+s+   c
  CDO73032.1 521 VYITICNNPRAIRFRREETILYCVIPGPQEPTTDHLNSILLPLIKELQRLYGGISFQiSdddepelLHAFLNNITSDLPAAHKLNGLRGHTSNAfMC 617
                 66789999999999***********************998777889999999876321122222236788999*****************9975134 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 6547.69
//
Query:       CDO73033.1  [L=497]
Description: hypothetical protein BN946_scf185007.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-124  414.3   0.0   4.8e-124  413.8   0.0    1.2  1  Fumble    Fumble


Domain annotation for each model (and alignments):
>> Fumble  Fumble
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.8   0.0  2.7e-128  4.8e-124       1     322 [.      48     497 .]      48     497 .] 0.92

  Alignments for each domain:
  == domain 1  score: 413.8 bits;  conditional E-value: 2.7e-128
      Fumble   1 hiavDiGgsLaKlvYfsr................................................................................. 18 
                 hiavDiGgsLaK++Yf+r                                                                                 
  CDO73033.1  48 HIAVDIGGSLAKVIYFTRsanppsspsqiatrgsspshvstplsssptrgsplaspptsaklnghsrgaltpavleqcnghggyldvpshrqdivhssl 146
                 89************************************************************************************************* PP

      Fumble  19 .....................kkkksaaekekeeeveeeeeseelggrLhfikfetekieevleflkelllkskekekkkk.......tikaTGGGayk 89 
                                      + k+++++  + +  ++++ ++  gg+L+f +fete+i+e+l f+++l+++s+e +           ++ aTGGGa++
  CDO73033.1 147 spdnkvssglsslndpatpslSPKSVHHSLLHDSLLRRASVQHVPGGSLNFERFETEHIDECLAFIRTLIVRSAEINGVPLeemrrgvKVIATGGGAHR 245
                 *********99999999987633333333334444455555677899************************99888665557899999*********** PP

      Fumble  90 yaelikeelgvevekedemeclikGlkfllteipkevftys.................e.ekpkkavek.keseeiyPylLvniGSGvsilkvegeekf 169
                 ++el+ +el+vev++edem cli+Glkf+ t ip+ev+++s                 + + pk+av+  ++  ++ P+lLvniGSGvsi+k++++ ++
  CDO73033.1 246 FYELLARELQVEVHREDEMACLIEGLKFI-TLIPDEVYYFSdelihsvshpreqlerpSpDPPKYAVSFvQDPVPQLPCLLVNIGSGVSIVKIDEDGSY 343
                 ****************************9.9*********************999876323666666653677889*********************** PP

      Fumble 170 ervgGtslgGgtfwGLlslLtgaksfdellelaekGdnskvDmlvgDiyGedyekiglksdliassfgkvfkkkkkkeeeek.eDiarslLyaisnnig 267
                 erv+GtslgGgt+wGLlslLt+a++fde+l+l+ekG+n++vDmlvgDiyG+dy+k+glks++ias+fgkvfkk+  ++ + + eDi++slLyaisnnig
  CDO73033.1 344 ERVSGTSLGGGTLWGLLSLLTPARTFDEMLALSEKGNNETVDMLVGDIYGSDYSKLGLKSTTIASTFGKVFKKQGGERGTFTpEDISKSLLYAISNNIG 442
                 ************************************************************************99666654447**************** PP

      Fumble 268 qiaylqaklhnlkriyFgGsfirgheqtmktlsyaikfwskgelkalFlrHegyl 322
                 qiay++a+++nl+riyFgG+firgh++t++tlsyai+fwskg+++alFlrHeg+l
  CDO73033.1 443 QIAYMNAEKYNLDRIYFGGYFIRGHAATISTLSYAIRFWSKGTKRALFLRHEGFL 497
                 ******************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3420.00
//
Query:       CDO73034.1  [L=598]
Description: hypothetical protein BN946_scf185007.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-47  158.9  17.1    3.5e-16   58.8   1.0    3.5  3  Homeodomain     Homeodomain
    1.6e-15   56.7   1.1     0.0014   18.5   0.0    3.9  3  Homeobox_KN     Homeobox KN domain
    2.6e-10   41.0   0.0      0.049   14.4   0.0    3.2  3  HOCHOB          Homeobox-cysteine loop-homeobox
      1e-05   25.3   0.1      0.058   13.3   0.0    3.3  3  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
    0.00067   19.1   2.1        2.8    7.5   0.0    3.8  4  Homez           Homeodomain leucine-zipper encoding, Homez
     0.0007   19.6   0.2        6.1    7.0   0.0    3.7  3  HTH_3           Helix-turn-helix
  ------ inclusion threshold ------
      0.041   13.8   0.0         14    5.7   0.0    2.4  2  HTH_36          Helix-turn-helix domain
       0.66   10.2   2.3        6.6    6.9   0.1    2.9  3  DUF1510         Domain of unknown function (DUF1510)


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   1.0   1.6e-19   3.5e-16       1      57 []      77     133 ..      77     133 .. 0.98
   2 !   55.7   1.2   1.5e-18   3.3e-15       1      56 [.     221     276 ..     221     277 .. 0.96
   3 !   53.7   1.4   5.9e-18   1.3e-14       1      57 []     372     428 ..     372     428 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.6e-19
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57 
                  +++R+++++ ql++L++l+ +n++ps eer+ LA++lg+e++ V  WFqN+Ra  kk
   CDO73034.1  77 KKPRHRHSTAQLAALNELYDKNEHPSLEERTALARRLGMETKTVNSWFQNKRASSKK 133
                  799**************************************************9987 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 1.5e-18
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek 56 
                  r+ R ++t+ q+eeL+kl+e+n++ps+eere L +k+g+  + V++WFqN+R   k
   CDO73034.1 221 RKARSRPTAAQTEELKKLYERNSHPSKEEREALGDKIGMRYQSVTNWFQNQRSIAK 276
                  899*************************************************8666 PP

  == domain 3  score: 53.7 bits;  conditional E-value: 5.9e-18
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57 
                  r +Rt++++ qle+L+klF+++++ps e+r+ LA+++g++ ++V++WF N R+ ++k
   CDO73034.1 372 RPRRTRPEPWQLEALKKLFNRTKTPSIEDRQMLAAEIGMDVNKVTNWFRNLRQSDRK 428
                  568*************************************************99887 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.1e-06    0.0071      10      39 ..     100     129 ..      97     130 .. 0.94
   2 !   18.2   0.0   7.9e-07    0.0018       8      38 ..     242     272 ..     240     273 .. 0.94
   3 !   18.5   0.0   6.3e-07    0.0014      11      39 ..     396     424 ..     396     425 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.1e-06
  Homeobox_KN  10 YPseedKeeLlkeTglsvkqitnWFINaRr 39 
                   Ps e+++ L+++ g+ +k ++ WF N R+
   CDO73034.1 100 HPSLEERTALARRLGMETKTVNSWFQNKRA 129
                  59**************************96 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.9e-07
  Homeobox_KN   8 nPYPseedKeeLlkeTglsvkqitnWFINaR 38 
                  n  Ps+e++e L ++ g++ + +tnWF N+R
   CDO73034.1 242 NSHPSKEEREALGDKIGMRYQSVTNWFQNQR 272
                  567***************************9 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 6.3e-07
  Homeobox_KN  11 PseedKeeLlkeTglsvkqitnWFINaRr 39 
                  Ps ed+++L++e g++v+ +tnWF N R+
   CDO73034.1 396 PSIEDRQMLAAEIGMDVNKVTNWFRNLRQ 424
                  999***********************995 PP

>> HOCHOB  Homeobox-cysteine loop-homeobox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00029      0.64       3      44 ..      93     134 ..      92     143 .. 0.90
   2 !   14.4   0.0   2.2e-05     0.049       3      44 ..     237     278 ..     236     284 .. 0.93
   3 !   11.9   0.0   0.00012      0.27       3      48 ..     388     433 ..     387     439 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
      HOCHOB   3 elfeknrHPsiqemikiseetgvkYeqvfkRfselRllkkek 44 
                 el++kn+HPs++e  +++++ g++ ++v   f++ R+  k++
  CDO73034.1  93 ELYDKNEHPSLEERTALARRLGMETKTVNSWFQNKRASSKKR 134
                 79********************************99987765 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
      HOCHOB   3 elfeknrHPsiqemikiseetgvkYeqvfkRfselRllkkek 44 
                 +l+e+n HPs +e  ++  ++g++Y+ v + f++ R+++k++
  CDO73034.1 237 KLYERNSHPSKEEREALGDKIGMRYQSVTNWFQNQRSIAKKR 278
                 79**********************************998875 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00012
      HOCHOB   3 elfeknrHPsiqemikiseetgvkYeqvfkRfselRllkkekCekn 48 
                 +lf++ + Psi++   ++ e+g++ ++v + f++lR+  +++ ++n
  CDO73034.1 388 KLFNRTKTPSIEDRQMLAAEIGMDVNKVTNWFRNLRQSDRKRARQN 433
                 79***********************************999888776 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.6e-05     0.058      10      34 ..     105     129 ..     100     136 .. 0.84
   2 ?    4.6   0.0     0.013        29      11      37 ..     250     276 ..     247     279 .. 0.85
   3 ?    3.2   0.0     0.036        81      11      34 ..     401     424 ..     396     432 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
  YdaS_antitoxin  10 gqkaLAealgvsqqaVsqWlkgkkq 34 
                     +++aLA++lg+  ++V+ W + k+ 
      CDO73034.1 105 ERTALARRLGMETKTVNSWFQNKRA 129
                     789*****************96654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
  YdaS_antitoxin  11 qkaLAealgvsqqaVsqWlkgkkqvpa 37 
                     + aL +++g+  q V +W + ++++  
      CDO73034.1 250 REALGDKIGMRYQSVTNWFQNQRSIAK 276
                     679999*************98887765 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.036
  YdaS_antitoxin  11 qkaLAealgvsqqaVsqWlkgkkq 34 
                     ++ LA ++g+    V +W +  +q
      CDO73034.1 401 RQMLAAEIGMDVNKVTNWFRNLRQ 424
                     578***************976666 PP

>> Homez  Homeodomain leucine-zipper encoding, Homez
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0023       5.2      31      52 ..     108     129 ..      99     134 .. 0.87
   2 ?   -2.8   0.1         2   4.6e+03      18      28 ..     163     173 ..     150     173 .. 0.77
   3 !    7.5   0.0    0.0012       2.8      31      52 ..     252     273 ..     232     278 .. 0.88
   4 ?    1.9   0.0     0.068   1.5e+02       4      48 ..     376     420 ..     373     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0023
       Homez  31 kLckksklsaqqVrdWFaskes 52 
                 +L+++ ++ ++ V +WF  k  
  CDO73034.1 108 ALARRLGMETKTVNSWFQNKRA 129
                 689999***********99875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
       Homez  18 ysqhgllqekD 28 
                 + qh++ +e D
  CDO73034.1 163 HPQHHQAYEYD 173
                 56999999987 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0012
       Homez  31 kLckksklsaqqVrdWFaskes 52 
                 +L  k ++ +q V +WF  + s
  CDO73034.1 252 ALGDKIGMRYQSVTNWFQNQRS 273
                 688899***********98766 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.068
       Homez   4 aqldpvdiqPLekYysqhgllqekDldkLckksklsaqqVrdWFa 48 
                 ++++p   + L k ++ ++     D   L+ + ++  ++V +WF 
  CDO73034.1 376 TRPEPWQLEALKKLFNRTKTPSIEDRQMLAAEIGMDVNKVTNWFR 420
                 666777777777777777777777888899999***********6 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01        23      13      37 ..     107     131 ..     105     134 .. 0.87
   2 !    7.0   0.0    0.0027       6.1      12      36 ..     250     274 ..     249     278 .. 0.89
   3 ?    2.8   0.0     0.055   1.2e+02      12      35 ..     401     424 ..     400     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
                 HHHHHHHTSSHHHHHHHHTTSSCSB CS
       HTH_3  13 eeLAeklGvsrstisriEnGernPs 37 
                 + LA++lG+   t++ ++ ++r+ s
  CDO73034.1 107 TALARRLGMETKTVNSWFQNKRASS 131
                 67******************99765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0027
                 HHHHHHHHTSSHHHHHHHHTTSSCS CS
       HTH_3  12 qeeLAeklGvsrstisriEnGernP 36 
                 +e L +k+G+ ++++++++ ++r++
  CDO73034.1 250 REALGDKIGMRYQSVTNWFQNQRSI 274
                 5899*****************9987 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.055
                 HHHHHHHHTSSHHHHHHHHTTSSC CS
       HTH_3  12 qeeLAeklGvsrstisriEnGern 35 
                 +++LA+++G+ ++ +++++++ r+
  CDO73034.1 401 RQMLAAEIGMDVNKVTNWFRNLRQ 424
                 679****************99664 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0064        14      16      47 ..      93     125 ..      88     126 .. 0.76
   2 ?    5.6   0.0    0.0069        16      30      51 ..     403     424 ..     396     426 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0064
      HTH_36  16 sfankngg.cfpsqetlakrlglsknTvsraik 47 
                  +++kn++        la+rlg+  +Tv ++ +
  CDO73034.1  93 ELYDKNEHpSLEERTALARRLGMETKTVNSWFQ 125
                 5667777744444788**************976 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0069
      HTH_36  30 tlakrlglsknTvsraikeLeq 51 
                  la+  g+++n+v ++ ++L+q
  CDO73034.1 403 MLAAEIGMDVNKVTNWFRNLRQ 424
                 69******************98 PP

>> DUF1510  Domain of unknown function (DUF1510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.14   3.1e+02       9      58 ..      83     132 ..      75     141 .. 0.80
   2 ?    6.9   0.1     0.003       6.6      12      55 ..     230     273 ..     220     291 .. 0.83
   3 ?   -2.3   0.0       2.3   5.1e+03      30      52 ..     399     421 ..     384     440 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.14
     DUF1510   9 vgTeqtgehtssydkgsvDwnEmekavskatglsednmivwwlgnggspq 58 
                   T+q    ++ ydk+     E + a+++  g++++++  w+ +++ s++
  CDO73034.1  83 HSTAQLAALNELYDKNEHPSLEERTALARRLGMETKTVNSWFQNKRASSK 132
                 567787777889999999999************99999999887765554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.003
     DUF1510  12 eqtgehtssydkgsvDwnEmekavskatglsednmivwwlgngg 55 
                 +qt+e ++ y+++s   +E ++a+   +g+  ++++ w+ +++ 
  CDO73034.1 230 AQTEELKKLYERNSHPSKEEREALGDKIGMRYQSVTNWFQNQRS 273
                 6888899************************9999999876554 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.3
     DUF1510  30 Emekavskatglsednmivwwlg 52 
                 E ++ +++ +g++ ++++ w+ +
  CDO73034.1 399 EDRQMLAAEIGMDVNKVTNWFRN 421
                 67788888899999999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4567.94
//
Query:       CDO73035.1  [L=358]
Description: hypothetical protein BN946_scf185007.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-26   90.3   2.9    1.2e-25   89.5   2.9    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.9e-17   63.4   0.1    4.7e-16   59.0   0.0    2.2  2  ADH_zinc_N    Zinc-binding dehydrogenase
    2.2e-06   28.8   0.0    4.7e-06   27.7   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    1.6e-05   24.3   0.5    2.6e-05   23.6   0.0    1.5  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
     0.0004   19.8   0.3    0.00065   19.1   0.3    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   2.9   3.3e-29   1.2e-25       2     108 ..      28     142 ..      27     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 3.3e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.......TTBEETTTSS- CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlC.......eeakllgvsld 92 
                 ++v + ++ +g+CgsD+h+lk+++  +   p+i+GHEivG+v +vg++vk+++ GdrV +      c eC+aC  g+en+C       + a++ gvs++
  CDO73035.1  28 EDVELAITHCGVCGSDIHVLKQHWGNTGDKPVIVGHEIVGKVTHVGERVKSVRPGDRVGIGGGLDsCRECRACAAGYENYCprlvitpNAAHYDGVSTQ 126
                 7899******************9999**********************************988877***************9999998888888999** PP

                 SSSBSEEEECGGGEEE CS
       ADH_N  93 Ggfaeyvvvpekklvk 108
                 Ggfa+   ++e+++++
  CDO73035.1 127 GGFATGARAHESFVFP 142
                 **********999987 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.045   1.6e+02      45      95 ..      45      95 ..      25     107 .. 0.84
   2 !   59.0   0.0   1.3e-19   4.7e-16       1     129 [.     184     312 ..     184     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.045
                HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEE CS
  ADH_zinc_N 45 dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgee 95
                ++ ++ +  tg+++v v  e vG  + + + +k+++pg r+ + Gg+  + 
  CDO73035.1 45 HVLKQHWGNTGDKPVIVGHEIVGKVTHVGERVKSVRPGDRVGIGGGLDSCR 95
                566777788999999999*****9999*************99999866655 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 1.3e-19
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEES...SCSHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfec...vGsgatleaalkllkpgGrlvvvGggkgeee 96 
                 gvG++a+ +Aka+Gaev+a  +   k++ a+++Gad+v+++      e ++e      +d+++ +   ++ g tl++ l +l  +G++v vG++  +e+
  CDO73035.1 184 GVGHYAILFAKAMGAEVYAFTRGTAKAADAREMGADHVVDT----TAEGWWEPY-NLTLDIIISTidrLAPGMTLPDILGMLFVHGKFVAVGLPPLDEP 277
                 9****************************************....467777777.56899976551116689*********************555555 PP

                 ...EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 ...fdlrnlllkeksilGsllgslreefkealdlla 129
                    + +++l ++  s+ G+l+gs +++ +++l+l+a
  CDO73035.1 278 lppVHPFMLGKNGSSLSGTLVGS-KSDAQTMLQLAA 312
                 4488888899*************.9*******9976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.3e-09   4.7e-06       1     122 [.     216     335 ..     216     337 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.3e-09
                   TT-SEEEETT.STTHH..HHH-TT-EEEEEES-H....HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe..aatggegvDvvldtvg....gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadil 90 
                   +GAd+v+d + +  +e  +       D+++ t++    g +l  ++l +l  +G++v +g ppl + l+++  +  g++ +    + +  s + d  
    CDO73035.1 216 MGADHVVDTTaEGWWEpyN----LTLDIIISTIDrlapGMTL-PDILGMLFVHGKFVAVGLPPLDEPLPPVHPFMLGKNGSSLSGT-LVGS-KSD-A 304
                   59********777776433....349***********65555.*******888*******88866666666665544444444444.4555.778.9 PP

                   HHHHHHHHHHH----EEEEEEGGGHHHHHHHH CS
  ADH_zinc_N_2  91 eelaalieeGklrpvvdrvfpleeaaeAhryl 122
                   +++++l +++++ p ++ ++p+++a+ A+++l
    CDO73035.1 305 QTMLQLAADKHVVPWIE-ELPMSQAKVALEDL 335
                   ****************8.7*********9987 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.5       1.5   5.4e+03      15      37 ..      67      90 ..      63      92 .. 0.78
   2 !   23.6   0.0   7.3e-09   2.6e-05      30     108 ..     176     255 ..     164     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
                 SEEETTC.EETCB---EEEEESTS CS
  AlaDh_PNT_C 15 gkgtlaG.gvpgvepakvlviGgG 37
                 gk+t +G +v+ v+p+  + iGgG
   CDO73035.1 67 GKVTHVGeRVKSVRPGDRVGIGGG 90
                 566666635899999999999999 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 7.3e-09
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE--..-BTTSS--- CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtv..lipGkkaPk 108
                  kv v+G G +G  Ai  ak++ga+V+++   +a++   +++ga    v +  e   +    + d++i+t+  l pG + P 
   CDO73035.1 176 KVGVLGIGGVGHYAILFAKAMGAEVYAFTRGTAKAADAREMGAD-HVVDTTAEGWWEPYNLTLDIIISTIdrLAPGMTLPD 255
                  899*****************************************.344455555667777899****99955567776665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   1.8e-07   0.00065      36      81 ..     174     219 ..     170     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-07
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgve 81 
                   g++vG++G+G +G+ ++  +ka+g++v+a+ r   k ++++e+g++
    CDO73035.1 174 GRKVGVLGIGGVGHYAILFAKAMGAEVYAFTRGTAKAADAREMGAD 219
                   789*****************************98887777777763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2639.79
//
Query:       CDO73036.1  [L=877]
Description: Glycosyltransferase Family 2 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-72  241.5   0.2    6.4e-72  240.8   0.2    1.3  1  Chitin_synth_1   Chitin synthase
    9.2e-25   87.2   0.8    2.4e-20   72.7   0.0    2.3  2  Chitin_synth_2   Chitin synthase
    1.1e-24   86.1   0.0    3.2e-24   84.7   0.0    1.8  2  Chitin_synth_1N  Chitin synthase N-terminal
    9.3e-07   28.9   0.2    9.3e-07   28.9   0.2    2.3  2  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.2   1.4e-75   6.4e-72       1     163 []     204     363 ..     204     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 1.4e-75
  Chitin_synth_1   1 mynEdkellarTLkgvmkNieelkkrkkskvwgkdsWkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttqlsvde 95 
                     mynEd++l++rT+++v+kNi++l++r+ksk+wg+d+Wkk+vVc+vsDGr+ki+++tl+vl+ +g+yqegvak++v+gk+v+ah+fe+t+++ v+e
      CDO73036.1 204 MYNEDEVLFTRTMNAVLKNIAHLCSRTKSKTWGPDGWKKVVVCVVSDGRSKINKRTLQVLTLMGCYQEGVAKDSVAGKDVTAHIFEFTSNVVVSE 298
                     9********************************************************************************************87 PP

  Chitin_synth_1  96 elklkenekslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                     + +    +++ +pvq++fclke+n+kk+nShrW+fnaf++l+qP+vc+lldvGtkp+++s+y+lwk f
      CDO73036.1 299 RGE---VSQGACPVQIIFCLKEQNKKKLNSHRWFFNAFGPLIQPNVCILLDVGTKPTSTSIYELWKCF 363
                     444...45577*******************************************************87 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   5.3e-24   2.4e-20     204     376 ..     341     519 ..     337     589 .. 0.83
   2 !   12.3   0.6   1.1e-05     0.049     435     492 ..     677     734 ..     626     760 .. 0.79

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 5.3e-24
  Chitin_synth_2 204 ivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankk......eswvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakga 292
                     +++++d  tk ++ s+ +l  ++ k +++ g cGe  ++  k      +s ++a q fey +s  l k +esvfG ++ lPG fs+yr ka +++
      CDO73036.1 341 VCILLDVGTKPTSTSIYELWKCFDKHSSVGGACGEICVDTGKacslllKSPLAASQNFEYKMSNILDKPLESVFGYISVLPGAFSAYRYKALQNG 435
                     67889********************************99866222333466799*************************************9998 PP

  Chitin_synth_2 293 dgkwvPilvspeiveeysenvvdtlhkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvh 376
                      +   P+    +   ++       l ++n+ +l edr l   ++ k+ +    ++v++ak+ t +P +   ++sqrrrw+n ++ 
      CDO73036.1 436 PDGKGPLASYFKGEAMHGAGSDAGLFERNM-YLAEDRILCfEIVTKKREAWVLKYVKSAKAATDVPTSVPEFISQRRRWLNGSLF 519
                     888999877666666667777778999996.799****98468889999999*****************************7643 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.1e-05
  Chitin_synth_2 435 lvllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswGet 492
                     ++ la+ +Gl     +++ + +++ + ++ y++ lP +  +l +ya  +l d +wG  
      CDO73036.1 677 VISLAATYGLYFFGSLIHFEPWHMFTSFIQYMFFLPSYVNILMMYAMCNLHDVTWGTK 734
                     466999*****999999999***********************************953 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   7.1e-28   3.2e-24       2      73 .]     135     203 ..     134     203 .. 0.96
   2 ?   -3.2   0.0       1.9   8.7e+03      35      48 ..     424     437 ..     418     438 .. 0.84

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 7.1e-28
  Chitin_synth_1N   2 kkvkLlngnlvldlpvpkkllkalpeeekeseEfthmRYtAvTcdPddftkegytLRqalygReteLlIviT 73 
                      ++v+L++gnlvld++ p++++ +     ++ eE++++RYtA+TcdPddf++e+y+LR+ l+gR+teL+Iv+T
       CDO73036.1 135 RQVELQEGNLVLDMQAPSHIVPKGM---ENIEEMSKLRYTAATCDPDDFMREKYSLRPYLMGRRTELFIVMT 203
                      89*******************9988...479****************************************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  Chitin_synth_1N  35 fthmRYtAvTcdPd 48 
                      f+  RY+A    Pd
       CDO73036.1 424 FSAYRYKALQNGPD 437
                      8899****988887 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2   2.1e-10   9.3e-07      46     196 ..     394     571 ..     343     575 .. 0.78
   2 ?   -2.8   3.0       1.1   4.9e+03     151     190 ..     641     720 ..     617     725 .. 0.42

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.1e-10
  Glyco_trans_2_3  46 elaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq.......................evggwdgdessvsEDfdmglrlqrkG...yr 113
                        + ++++ + + d +  + +g    ++G+ ++ r +alq                       ++g ++ ++  ++ED  +++ + +k    ++
       CDO73036.1 394 ASQNFEYKMSNILDKPLESVFGYISVLPGAFSAYRYKALQngpdgkgplasyfkgeamhgagsDAGLFE-RNMYLAEDRILCFEIVTKKreaWV 486
                      55667788888999999999999999************************9999999999998888999.889************877767799 PP

  Glyco_trans_2_3 114 vrfvpeslvkekspltlraalrQrkRwayGceleklillvrllgylgsllwsalplhlallllfslla......lalvlllllllaall 196
                      + +v ++   + +p ++  ++ Qr+Rw+ G     l++ v+   +++++++s+  +   +ll   +++      + ++ l+ ++la+++
       CDO73036.1 487 LKYVKSAKAATDVPTSVPEFISQRRRWLNGS----LFASVHATVFWFRIWTSGQGFFRKILLQIEFIYnavqliFTWTSLANFYLAFFF 571
                      999999999*********************5....444444445555555566555555555555555555555555555555555544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
  Glyco_trans_2_3 151 l...................................lvrllgylgsllwsalp....lhlallllfslla.lalvlllll 190
                                                           ++l + +g++++ +l     +h++ +++++++   ++v +l++
       CDO73036.1 641 TlwcagytvylavphtldgwkdfphlvqtnatfrdiVISLAATYGLYFFGSLIhfepWHMFTSFIQYMFFlPSYVNILMM 720
                      13344444444444444444444444444444444333333333333333322333366666666664331333334443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5674.01
//
Query:       CDO73037.1  [L=366]
Description: hypothetical protein BN946_scf185007.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-26   92.1   0.0    4.7e-26   91.7   0.0    1.1  1  Pkinase          Protein kinase domain
    1.2e-13   51.0   0.0    1.9e-13   50.3   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    1.1e-09   37.6   0.0    1.9e-09   36.8   0.0    1.4  1  Pkinase_fungal   Fungal protein kinase
     0.0017   18.3   1.2     0.0079   16.1   0.1    2.5  3  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.017   14.5   0.7       0.11   11.8   0.1    2.2  2  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
      0.025   13.6   0.1      0.036   13.0   0.1    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   1.6e-29   4.7e-26       1     213 [.      17     236 ..      17     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 1.6e-29
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEES.SEEEEEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeek.delylvleyveggeladlle.rkgslse 97 
                 y+  +k+G+GsfG +y +++  +g++vA+K  +++ +      ++  E k+ k+l     v ++++f ++ d+  +v +++   +l+dl +  ++++s 
  CDO73037.1  17 YRLGKKIGSGSFGDIYLGINIISGEEVAIKLESVKAKHP----QLEYESKVYKTLAGGVGVPFVRWFGTEcDYNAMVIDLLG-PSLEDLFNfCHRKFSL 110
                 67789*************************877766665....4569*********99999999999885156669999998.5588888876779*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE..TTTE.EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLid..ekge.lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWslGv 185
                 +++  +a q+++ +ey+Hs+++iHrD+Kp+N+L+   ++g+ + ++DFGlak+++  ++         ++ +gt +Y +     + e  +  D+ sl+ 
  CDO73037.1 111 KTVLLLADQLISRIEYIHSRNFIHRDIKPDNFLMGigKRGNqVNVIDFGLAKKYRDPKThlhipyreNKNLTGTARYTSINTHLGVEQARRDDLESLAY 209
                 *********************************986555557**************9999******99***********9888888999999******* PP

                 HHHHHHHSS-STTTSSHHHHHHHHHHTH CS
     Pkinase 186 ilyelltgkppfsgekgkekvekeldql 213
                 +l+ +l g+ p++g k  + +++++d++
  CDO73037.1 210 VLMYFLRGSLPWQGLKAAT-KKQKYDRI 236
                 *************666554.44444442 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   6.2e-17   1.9e-13       2     211 ..      18     226 ..      17     250 .. 0.69

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 6.2e-17
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkeke 98 
                  +lgkk+G+G+fG+++ g        + ++Va+K  + +a++    +l  e k+ k+l     v ++ +   + +   +v++++   +L++  +   ++
   CDO73037.1  18 RLGKKIGSGSFGDIYLGINI----ISGEEVAIKLESVKAKHP---QLEYESKVYKTLAGGVGVPFVRWFGtECDYNAMVIDLLGP-SLEDLFNFC-HR 106
                  5799*************999....78899****997777776...6667777777774444444444333255667788888753.455555554.55 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsksDv 188
                  k++lk++l +a q+ + +ey++s++++Hrd+   N L+     +++v + DfGLa++  + ++      +++++ +   +++++ +    +   + D 
   CDO73037.1 107 KFSLKTVLLLADQLISRIEYIHSRNFIHRDIKPDNFLMGIgkrGNQVNVIDFGLAKKYRDPKTHlhipyRENKNLTGTARYTSINTHLGVEQARRDDL 204
                  6************************************97433388***********995444333444355666666666766666666666666666 PP

                  HHHHHHHHHHHTTSSGTTTTSHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypglkn 211
                   s + +l+  +  g+ p++glk+
   CDO73037.1 205 ESLAYVLMYFLR-GSLPWQGLKA 226
                  666655554444.6666666654 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   6.4e-13   1.9e-09     323     407 ..     128     214 ..     107     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 6.4e-13
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsyrhDLESffyvllwi 407
                     +   +++HrDi  +N l+     +++++  +iD+ lak++ d++++      ++++ tGT+ + +i+   g e   r+DLES+ yvl++ 
      CDO73037.1 128 H-SRNFIHRDIKPDNFLMG--IGKRGNQVNVIDFGLAKKYRDPKTHLhipyrENKNLTGTARYTSINTHLGVEQARRDDLESLAYVLMYF 214
                     4.7899*************..7788999*************988887666666699*******************************995 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.56   1.7e+03      32      67 ..      52      86 ..      39      97 .. 0.79
   2 !   16.1   0.1   2.6e-06    0.0079     167     197 ..     131     162 ..     116     164 .. 0.90
   3 ?   -2.5   0.2       1.3   3.9e+03      73     100 ..     323     352 ..     311     361 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.56
                S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEET CS
         APH 32 raaeeirrevallrlLakagvpvPevlagdtddeei 67
                  +++++ e ++++ La+  v vP v +++t ++ +
  CDO73037.1 52 AKHPQLEYESKVYKTLAGG-VGVPFVRWFGTECDYN 86
                5789999999999999988.6789999999999866 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.6e-06
                 EEE-SS-SGGGEEEC....TTEEEEE---TT-E CS
         APH 167 vllHgDlhpgNllvd..pddgrvtGviDfedag 197
                  ++H+D++p+N+l+   +++++v  viDf++a+
  CDO73037.1 131 NFIHRDIKPDNFLMGigKRGNQV-NVIDFGLAK 162
                 58**************9888888.9*****996 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.3
                 EEE----EE-SS..HHHHHHHHHHHHHHHH CS
         APH  73 lieyvpgrsllr..klsaaqlpellealge 100
                 l+e  + r+ +r  + + +q++++++a+g+
  CDO73037.1 323 LQEEEEHRVSDRmlRSHTRQQQQAAQAAGA 352
                 555555555555554445555555554444 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.8e-05      0.11     129     170 ..     122     162 ..      96     209 .. 0.84
   2 ?    0.6   0.1       0.1     3e+02      15      61 ..     261     306 ..     260     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                   i+ +h+++  H+d+ + n+l+  ++  + ++ +iD+  a+
  CDO73037.1 122 SRIEYIHSRNFIHRDIKPDNFLMGIGK-RGNQVNVIDFGLAK 162
                 568889********************8.99********7654 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
         Kdo  15 egRrttwfvvaekvnaalrkyyrggllgklskdlyrfklgrtravrE 61 
                 ++ r ++f ++++  ++lrk++r   + + ++  y f ++  ra+ E
  CDO73037.1 261 NYTRALRFDDKPD-YSYLRKLFRDLFVREGYQYDYVFDWSMQRAMDE 306
                 6678899999999.89************999999*********9998 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.2e-05     0.036     277     312 ..     110     144 ..      92     159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
  Pox_ser-thr_kin 277 ikfifLqiaLLyikiyelpdcenflhvDlkPdniLi 312
                      +k ++L +a  +i   e    +nf+h D+kPdn L+
       CDO73037.1 110 LKTVLL-LADQLISRIEYIHSRNFIHRDIKPDNFLM 144
                      455555.44445554599999************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.55
# Mc/sec: 1998.44
//
Query:       CDO73038.1  [L=2335]
Description: hypothetical protein BN946_scf185007.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-118  395.1   0.0   8.1e-118  394.2   0.0    1.3  1  Adaptin_N        Adaptin N terminal region
    1.3e-56  191.0   1.0    2.7e-56  189.9   1.0    1.6  1  COP-gamma_platf  Coatomer gamma subunit appendage platform su
    4.6e-33  113.8   0.0    9.8e-33  112.7   0.0    1.6  1  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag
    6.6e-28   96.6   0.0    2.4e-15   56.3   0.0    5.6  5  cNMP_binding     Cyclic nucleotide-binding domain
    2.1e-18   67.2   2.3    8.7e-13   48.9   1.3    2.9  2  Patatin          Patatin-like phospholipase
    1.9e-16   60.2   1.9    7.7e-09   35.8   0.0    6.4  8  HEAT_2           HEAT repeats
    7.1e-07   29.4   7.7       0.15   12.1   0.0    5.2  6  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
       0.15   12.2   0.3          3    8.1   0.0    3.1  3  RTP1_C1          Required for nuclear transport of RNA pol II
       0.16   12.3   6.6         54    4.4   0.2    5.6  5  HEAT             HEAT repeat


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.2   0.0  4.1e-121  8.1e-118       3     520 ..      20     573 ..      18     576 .. 0.96

  Alignments for each domain:
  == domain 1  score: 394.2 bits;  conditional E-value: 4.1e-121
                 HHCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---G.....HHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCC.SSSHHH CS
   Adaptin_N   3 kriqqelaeilnsnkdddekkkeavkkliylialGedvs.....flffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlk.dpnqli 95 
                 +++ qe a+++n+++++++k++  +++++yl++ Ge++       lff ++kl+++kd  l+++vYl++++lae++ed +++vt+s++kD++ +++ ++
  CDO73038.1  20 TTVIQE-ARVFNESPISPRKCRALLTRIVYLLYVGETFNtqeatTLFFGTTKLFQHKDSALRQMVYLAIKELAETAED-VIMVTSSIMKDMQpNSEVIY 116
                 566677.999**************************88888888**********************************.*************999999* PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSH............................ CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdp............................ 166
                 r +A+r+L++i++p++a+ +++  k++++d++p+++++A++++++l+   +d ++++ v+e +e++++k+                             
  CDO73038.1 117 RPNAIRALCRIIDPSMAQGVERFFKAAIVDKNPSISSAALVSAYHLFPHAKDVVKRW-VNEAQEAVNSKSSgsffgssvsggsylgwggssssassgyq 214
                 ******************************************************996.************999************************** PP

                 .......HHHHHHHHHHHHHHCCCCCCC.HHHHHHHCCHHHHH.....HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHH CS
   Adaptin_N 167 .......gvvlaAvalleeikkndrlll.kllpklvrrLcnll.....teldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletv 252
                        + +++ + ll+ i+++dr+++ k++++l             t  +p + +++i++  ++++++p  +  +++l+ l+ +l+++n++V le++
  CDO73038.1 215 tipstsyITQYHSLGLLYLIRQQDRMAVtKMIQQLGGG----KsgagtTLKNPMALCMLIRYAAKVMEEDPNVQ--RQMLDLLEGWLRHKNDMVNLEAA 307
                 **************************878888877654....12234599************************..99********************* PP

                 HHCCHCCCCST.HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTS CS
   Adaptin_N 253 nlivelapkne.livlavnaLvrllsskdenlryvaLrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvke 350
                 ++i e+++ ++  +++ + +L+ +lss++  l+++a rtl+ ++ ++p++v  ++++++ l++d+++s++++a+++llk+++e +v++++k++  +++e
  CDO73038.1 308 RVICEMKNVTPqQLTRSIAVLQLFLSSPKSTLKFAATRTLAALAVTHPTSVAACNIDLENLISDPNRSVATYAITTLLKTGNEASVDRLMKQISGFMSE 406
                 ******99877789************************************************************************************* PP

                 SXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHH.HHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT CS
   Adaptin_N 351 vadedfksklvkaIgrlaekfatdaewvldvllellslsgesv.kdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsn 448
                 ++de fk  +v+aI++l+ kf++++e++l++l  +l+++g++  k+++ve+i d+i+  ++ +e ++++L+e++e++e++++  ++++llG +g+++++
  CDO73038.1 407 ISDE-FKVIIVDAIRSLCLKFPSKHESMLAFLSGVLRDEGGYDfKRAVVEAIFDMIKFIADCKEQALSHLCEFIEDCEFTKLSVRVLHLLGVEGPKAPH 504
                 *999.*********************************998866******************************************************9 PP

                 ...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHH CS
   Adaptin_N 449 tesasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRaveylqll 520
                    +++++r +++++vle+++v+++++ al+K++l++ d++ ++++  l+ +++++ d+evrdRa  yl++ 
  CDO73038.1 505 ---PTKYIRFIYNRVVLENATVRAAAVAALAKFGLNNIDAKLGKSVHVLLNRCLDDVDDEVRDRAALYLKVY 573
                 ...*****************************************************************9876 PP

>> COP-gamma_platf  Coatomer gamma subunit appendage platform subdomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   1.0   1.3e-59   2.7e-56       2     151 ..     660     808 ..     659     809 .. 0.92

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 1.3e-59
  COP-gamma_platf   2 eyaeqlaaipefaelGkllkss.kpveLTesetEYvVsvvKhifkehiVlqfnikNtledqvLenvsvqlepeeee.lfeevfiipiekLkyne 93 
                      +ya+qla++pe+a++G++l+ss kp +LTesetEY+VsvvKhifkehiV+qfn++Nt++d+vLe+vsv ++p++e  l+e+ fiipi++L++ +
       CDO73038.1 660 NYAQQLADVPELASYGPVLNSSaKPSPLTESETEYQVSVVKHIFKEHIVFQFNVSNTIPDTVLEQVSVIMQPQSEGgLTED-FIIPIPTLTAAT 752
                      79********************9*************************************************665557777.********9776 PP

  COP-gamma_platf  94 .pgsvyvvlkrpseeeeklvsatfsntLkFtvkevdpstgepeeedgyeDeYqledlel 151
                       pg vyv+++r+++  e++v+a+f++tLkF++ke+dpstgepeee gyeDeYqle+ el
       CDO73038.1 753 sPGIVYVSFTRENP--EEYVQASFQCTLKFISKELDPSTGEPEEE-GYEDEYQLEETEL 808
                      6*********8766..4577888*******************666.**********987 PP

>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   4.9e-36   9.8e-33       1     115 []     811     924 ..     811     924 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 4.9e-36
                      GGGEEE---S-HHHHHHHH-STT-EEEEEEESS---HHHHHHHHHHHHT-EE-TTTT---SS-SEEEEEEEEEETT.S-EEEEEEEEEE..SS. CS
  Coatomer_g_Cpla   1 sDyikpvavsnFeaaWeeleseaeavetfaLssvksleeavdkliellgmqplegsdkvpenassHtLklaGkfvg.gekvlvrarlalssskg 93 
                      +Dyi p++v +F+++W++++   +++etf+L s++sl++a+++++e+l+mqpl+g++  p++ ++HtL+l+G ++g g+kvlvr+r+++s+ +g
       CDO73038.1 811 ADYIVPSYV-TFASEWDRMRGGVSVTETFSLPSMESLKAACNSVVEILNMQPLGGTE-DPQSPTVHTLQLSGIVAGgGGKVLVRCRMTYSKAQG 902
                      6********.***********************************************.89999*************888*************** PP

                      EEEEEEEEESSHHHHHHHHHH- CS
  Coatomer_g_Cpla  94 vtlkltvRsedeevaelvlsav 115
                      vtl++ vR+e++++a+lv+sa+
       CDO73038.1 903 VTLEVGVRAEQQAAADLVISAI 924
                      *******************986 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.013        26       6      36 ..    1123    1151 ..    1118    1168 .. 0.72
   2 !    7.7   0.1    0.0019       3.7      62      88 ..    1220    1246 ..    1211    1247 .. 0.86
   3 !    7.6   0.0     0.002         4       3      31 ..    1518    1546 ..    1516    1567 .. 0.84
   4 !   12.6   0.0   5.6e-05      0.11      34      88 ..    1597    1651 ..    1592    1652 .. 0.89
   5 !   56.3   0.0   1.2e-18   2.4e-15       2      87 ..    1681    1766 ..    1680    1768 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
                    TT-EEE-TTSB-SEEEEEEES-EEEEEEETT CS
  cNMP_binding    6 agevifrqGdpadslyivlsGevrvyrlsed 36  
                    ag+++    d+  s+y v+ G v+vy+++++
    CDO73038.1 1123 AGDTLSLDQDK--SFYCVIDGNVQVYAQTGQ 1151
                    55665555555..8***********865554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0019
                    -SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   62 rtatvvAltdsellalprddflellqq 88  
                    ++  ++A +ds+l+++p+++f++l ++
    CDO73038.1 1220 YSVVARAAEDSTLAVIPAEAFRRLTKK 1246
                    55668999***************9875 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.002
                    EE-TT-EEE-TTSB-SEEEEEEES-EEEE CS
  cNMP_binding    3 sfkagevifrqGdpadslyivlsGevrvy 31  
                     f+ag+++ ++G++ ++l++v+ G + + 
    CDO73038.1 1518 FFPAGSILAKAGERNTGLFYVIDGFLDMI 1546
                    699*********************99986 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 5.6e-05
                    ETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   34 sedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqq 88  
                    ++d  ++ l +++pG + G l+ l ++ +  ++vA+td+ +  lp  ++++ll++
    CDO73038.1 1597 NKDRSQKPLFTVKPGGIAGYLSSLCQTASYVDIVAKTDTYVGYLPSPALERLLER 1651
                    56666678889*************9999************************987 PP

  == domain 5  score: 56.3 bits;  conditional E-value: 1.2e-18
                    EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding    2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87  
                    +++ ag+v++r++d  ds+yiv+ G++r  + +e+g  +++a++g+Gd++Gel ++t +pr  t+ A+ d+el+++p+  f+++ +
    CDO73038.1 1681 VQVDAGQVLWRPDDVSDSFYIVINGRLRAITEKENGGITITAEYGQGDTVGELDVITSSPRRNTLHAIRDTELIRMPQTLFNAISS 1766
                    6789**************************************************************************99988765 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   1.3   4.3e-16   8.7e-13       2      49 ..    2030    2076 ..    2029    2122 .. 0.88
   2 !   16.2   0.0   4.6e-06    0.0092     153     203 ..    2142    2192 ..    2136    2193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 4.3e-16
     Patatin    2 vlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrd 49  
                  vl+GGG+rg+++lg+l+aL ++ g+ +d+i+GtS+GA+i+ l+a ++d
  CDO73038.1 2030 VLGGGGARGISHLGVLRAL-EDYGIPVDHIGGTSIGAFIGGLYAREGD 2076
                  9******************.***********************99865 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.6e-06
     Patatin  153 glytedddddvdladavraSsafPglfppvsldgelyvDGGilsNvPilaa 203 
                  + ++++  +++  ++ +raS+++ gl+pp   +g+ +vDGG  +N+P+ a+
  CDO73038.1 2142 NGSRMEIHETGYAWRFIRASMTLVGLLPPLCDNGNMLVDGGYIDNLPVSAM 2192
                  56677788888999*********************************9876 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.8   7.5e+03      39      60 ..      71      92 ..      68     100 .. 0.73
   2 ?    4.0   0.0     0.032        65      16      54 ..     116     158 ..     101     180 .. 0.82
   3 !    6.8   0.1    0.0043       8.6       4      59 ..     291     351 ..     278     363 .. 0.70
   4 !    8.2   0.0    0.0016       3.2       5      69 ..     328     398 ..     326     402 .. 0.75
   5 !    5.8   0.0    0.0094        19      37      69 ..     366     398 ..     361     458 .. 0.57
   6 ?    3.0   0.0     0.068   1.4e+02       7      69 ..     406     477 ..     400     480 .. 0.75
   7 !   35.8   0.0   3.9e-12   7.7e-09       2      87 ..     473     570 ..     472     571 .. 0.87
   8 ?   -3.6   0.0         8   1.6e+04      43      70 ..    1959    1986 ..    1947    1992 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.8
      HEAT_2 39 llededpavRraaaeaLgaigd 60
                l +++d+a R+++  a+ ++++
  CDO73038.1 71 LFQHKDSALRQMVYLAIKELAE 92
                6688888889888888877754 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.032
      HEAT_2  16 vrraairaLgrignp...ealpaLvell.ededpavRraaaea 54 
                  r +airaL ri +p   + ++ +++++  d++p +  aa  +
  CDO73038.1 116 YRPNAIRALCRIIDPsmaQGVERFFKAAiVDKNPSISSAALVS 158
                 4679*******999966667999999888*******9999765 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0043
      HEAT_2   4 LlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgaig 59 
                 L   l +++++ v  +a+r++ +++n       ++++ L  +l+++++    aa ++L+a++
  CDO73038.1 291 LEGWL-RHKNDMVNLEAARVICEMKNVtpqqltRSIAVLQLFLSSPKSTLKFAATRTLAALA 351
                 33345.67788888888888887766333455566888888888888888888888888765 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0016
      HEAT_2   5 lqalendpdpevrraairaLg..rignpealpa....LvellededpavRraaaeaLgaigdpealpaLke 69 
                 lq+  ++p   ++ aa r+L+     +p++++a    L +l++d+++ v   a+++L + g++++++ L +
  CDO73038.1 328 LQLFLSSPKSTLKFAATRTLAalAVTHPTSVAAcnidLENLISDPNRSVATYAITTLLKTGNEASVDRLMK 398
                 555567888888888999999443345544333233378899************************99976 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0094
      HEAT_2  37 vellededpavRraaaeaLgaigdpealpaLke 69 
                  +l++d+++ v   a+++L + g++++++ L +
  CDO73038.1 366 ENLISDPNRSVATYAITTLLKTGNEASVDRLMK 398
                 445555555555555555555555555555543 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.068
      HEAT_2   7 alendpdpevrraairaLg...rignpealpaLvelleded.pavRraaaeaL....gaigd..pealpaLke 69 
                  + +d+++ +   air+L      ++++ l+ L  +l+de   +  ra++ea+      i+d  ++al++L+e
  CDO73038.1 406 EI-SDEFKVIIVDAIRSLClkfPSKHESMLAFLSGVLRDEGgYDFKRAVVEAIfdmiKFIADckEQALSHLCE 477
                 56.78888888889999998555588899999999**998757899999998843334555555899999987 PP

  == domain 7  score: 35.8 bits;  conditional E-value: 3.9e-12
      HEAT_2   2 daLlqalendpdpevrraairaLg....ri.gnpealpaLvellededpavRraaaeaLgaigdpe.......alpaLkellddddddvvReaAaeaL 87 
                 ++L++++e+++++++  ++++ Lg    +  +++++++ + + +  e++ vR+aa+ aL+++g++        ++ +L+ +++dd dd+vR +Aa  L
  CDO73038.1 473 SHLCEFIEDCEFTKLSVRVLHLLGvegpKApHPTKYIRFIYNRVVLENATVRAAAVAALAKFGLNNidaklgkSVHVLLNRCLDDVDDEVRDRAALYL 570
                 78**********************99985514559***************************953333445559********************9877 PP

  == domain 8  score: -3.6 bits;  conditional E-value: 8
      HEAT_2   43 edpavRraaaeaLgaigdpealpaLkel 70  
                  e p +   a++a+   +dp+a+ aLk++
  CDO73038.1 1959 ELPGINTSAVRAAPPPQDPAAVIALKKM 1986
                  5566667777777777888888888874 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.1     1e+04      64      96 ..      69     100 ..      60     110 .. 0.67
   2 !    8.2   0.0    0.0012       2.4       3      55 ..     117     171 ..     115     184 .. 0.89
   3 ?    2.0   0.1     0.096   1.9e+02     123     160 ..     273     310 ..     262     337 .. 0.66
   4 !    7.0   0.1    0.0028       5.6       5      82 ..     342     422 ..     338     475 .. 0.83
   5 !   12.1   0.0   7.3e-05      0.15      22     104 ..     508     591 ..     505     613 .. 0.75
   6 ?   -1.8   0.0       1.4   2.8e+03      77     111 ..    1756    1790 ..    1749    1798 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.1
        Cnd1  64 aklleDenprVvanalaalteiseksenaiynl 96 
                  kl + +++  ++++ +a++e++e +e+ i  +
  CDO73038.1  69 TKLFQHKDSALRQMVYLAIKELAETAEDVI-MV 100
                 566677788888888888888888864433.33 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
        Cnd1   3 RalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvk 55 
                 R +air+l+ i  p++ + +    ++++ D++p +   a++   +L  + +d+vk
  CDO73038.1 117 RPNAIRALCRIIDPSMAQGVERFFKAAIVDKNPSISSAALVSAYHLfpHAKDVVK 171
                 88********************************************666666665 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.096
        Cnd1 123 Llsyipkdkqeaeslveklcprlqhansavvlaaikvi 160
                  ++ +++d + + ++++ l   l+h+n+ v l+a +vi
  CDO73038.1 273 AAKVMEEDPNVQRQMLDLLEGWLRHKNDMVNLEAARVI 310
                 45555666666666666666666666666666666655 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0028
        Cnd1   5 lairtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaal 82 
                  a rtl+  ++  p+ v +   +L++ ++D++  V   a+ +++k  ++  v     ++s + + ++De + ++  a+ +l
  CDO73038.1 342 AATRTLAalAVTHPTSVAACNIDLENLISDPNRSVATYAITTLLKTGNEASVDRLMkQISGFMSEISDEFKVIIVDAIRSL 422
                 578899988888899999999999999999999999999999999966666665555888888888888877777666555 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 7.3e-05
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL.iln.dmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiiskl 104
                 ++  +++r+  e+++VR  a+ ++ak  ++n d    k +   l+++l+D +++V++ a + l+ + e    +   ++ ++i++l
  CDO73038.1 508 YIRFIYNRVVLENATVRAAAVAALAKFgLNNiDAKLGKSVHVLLNRCLDDVDDEVRDRAALYLKVYEEPP-LIQPYIKEESIYSL 591
                 677788888889***************7444144455557788999*************99998776653.44444444555554 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.4
        Cnd1   77 nalaalteiseksenaiynllpdiisklsdalnec 111 
                  + +++++ is+++++++ +ll+ i+s++ ++l++ 
  CDO73038.1 1756 MPQTLFNAISSRNPRTTAQLLRMIASRVRNELDSS 1790
                  5568999********************99876654 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4   2.8e+03      18      77 ..      77     137 ..      70     151 .. 0.78
   2 ?    8.1   0.0    0.0015         3      19      79 ..     265     325 ..     262     358 .. 0.90
   3 ?   -0.7   0.0      0.78   1.6e+03      14      77 ..     372     435 ..     365     465 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
     RTP1_C1  18 hglvlLrkliekkskeavldiekilkllleaLkdedsYvYL.naikgLvaLadvfpeevlk 77 
                  +l+++  l+ k+ +e+++d+  +++ +++ ++ + + +Y  nai++L+ ++d   ++ ++
  CDO73038.1  77 SALRQMVYLAIKELAETAEDVIMVTSSIMKDMQPNSEVIYRpNAIRALCRIIDPSMAQGVE 137
                 6777777777777778888888888999999999999999659999999999876665555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0015
     RTP1_C1  19 glvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklL 79 
                 +l +L + + k  +e+   ++++l+ll   L+++++ v L+a ++++++ +v p++ ++ +
  CDO73038.1 265 ALCMLIRYAAKVMEEDPNVQRQMLDLLEGWLRHKNDMVNLEAARVICEMKNVTPQQLTRSI 325
                 6777788888888889999***********************************9988765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.78
     RTP1_C1  14 pvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlk 77 
                 p r+ + + +++l+++ ++ +v  + k ++ +++ ++de + + + ai+ L+      +e++l 
  CDO73038.1 372 PNRSVATYAITTLLKTGNEASVDRLMKQISGFMSEISDEFKVIIVDAIRSLCLKFPSKHESMLA 435
                 6788888888888888888889999999999999999999999999999888655555555555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.26   5.2e+02       7      29 ..      70      92 ..      69      94 .. 0.91
   2 ?   -0.3   0.1       0.9   1.8e+03       6      28 ..     328     351 ..     326     353 .. 0.85
   3 ?   -1.8   0.0       2.7   5.4e+03       7      24 ..     367     384 ..     365     386 .. 0.67
   4 ?    3.9   0.2      0.04        79      12      27 ..     519     534 ..     519     537 .. 0.88
   5 ?    4.4   0.2     0.027        54       5      24 ..     550     570 ..     547     572 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.26
                HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  7 kllsDpspeVReaAakaLgalae 29
                kl +++++  R+++ +a+ +lae
  CDO73038.1 70 KLFQHKDSALRQMVYLAIKELAE 92
                6789*****************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.9
                 HHH.HT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkl.lsDpspeVReaAakaLgala 28 
                 l+l ls+p +    aA ++L+ala
  CDO73038.1 328 LQLfLSSPKSTLKFAATRTLAALA 351
                 56647999999**********997 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
                 HHHT-SSHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaL 24 
                 +l+sDp+ +V   A+ +L
  CDO73038.1 367 NLISDPNRSVATYAITTL 384
                 455888888877777665 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.04
                 SSHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgal 27 
                 +++ VR+aA+ aL+++
  CDO73038.1 519 ENATVRAAAVAALAKF 534
                 6899*********987 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.027
                 HHHH.HT-SSHHHHHHHHHHH CS
        HEAT   5 llkl.lsDpspeVReaAakaL 24 
                 ll+  l D + eVR+ Aa+ L
  CDO73038.1 550 LLNRcLDDVDDEVRDRAALYL 570
                 445516************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.17u 0.28s 00:00:01.45 Elapsed: 00:00:00.45
# Mc/sec: 15708.05
//
Query:       CDO73039.1  [L=681]
Description: hypothetical protein BN946_scf185007.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-99  333.1   0.0    8.4e-98  329.1   0.0    1.9  2  Sec1      Sec1 family
  ------ inclusion threshold ------
        2.2    8.1   6.6        4.8    7.0   0.0    3.3  4  SpoIIIAH  SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0071        63       1      23 [.      69      91 ..      69      93 .. 0.93
   2 !  329.1   0.0  9.3e-102   8.4e-98      70     575 .]      98     667 ..      88     667 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0071
                EEEEE-HHHHHHHHTT--HHHHH CS
        Sec1  1 KvLvlDkelskilssvlkvsdll 23
                K+LvlD+ l+++l++v++v+ l+
  CDO73039.1 69 KTLVLDPTLAGPLGLVTEVALLK 91
                89***************999886 PP

  == domain 2  score: 329.1 bits;  conditional E-value: 9.3e-102
                 S-SBS-EEEEESS---...HHHHH..HHHH..SG.GGGEEEEE----SEEEETTEEE-STTHHHHSTTG.....GG.......--HHHHHHHHHHHHHH CS
        Sec1  70 arrykeyhifftprls...eslle..glakadeevvkkvklkelnldfvplesdlfslnpelplsfrdlyldndnsaleeeieslldriakgLlsvlls 163
                   +++ y+++ +pr s     +le  g++ +d   v+   ++ +nl f+pl +d++sl  e +++f++ ++d+d + +++          ++L++  l 
  CDO73039.1  98 DSQKHTYTLLLVPRTStlvARILEeeGVL-GD---VT---ISSYNLQFIPLADDVISL--ERDSAFKEIWVDGDETVIYD--------SMQALTT--LE 177
                 2789************9998888888888.88...88...99****************..999*******9999998777........9******..65 PP

                 H-...--EEEE-TT-HHHHHHHH...........HHHHTTT.....--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--................ CS
        Sec1 164 lek.kiPiirykgsaasmvakkladelkekids.kknfese.....ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgg................ 239
                  ++  +P+i++kg+ a+    +la++l  + +s +++ +++     +s++ + LiIlDR+vD+++pll+q+TY++lid+l+g+                
  CDO73039.1 178 KLHgLFPRIVGKGDYAA----RLANLLTRNTSSaSSSSPQDthlssPSETIDSLIILDRRVDMISPLLTQLTYEGLIDELIGIknshvelpvslvsppt 272
                 5345*************....9999999988886666666699999999999*****************************867777777777777776 PP

                 ...........BTEEEEEE--SS............SEEEEEE--TT..-TTHHHHTTSBHHHHHHHHHHHHHHHHHHHHTTT...-TTHHHHHHHHHH- CS
        Sec1 240 ...........lnnnnvvleeep............keekeaelvesssDeffaelrhlnfgevgeklkkeakeyqeenekkrngakesiadlkkfvakl 315
                                                    ke+k+++++ +  D++ +el +lnf++vg+kl++ a+++ e++ k r++a+ ++a+l++fv kl
  CDO73039.1 273 gsnqgeasssaA----------AassstlnaasltKEKKRKYHLTTTADPLLSELQDLNFSAVGKKLNQIARRLDEDY-KLRHQAN-TVAQLREFVGKL 359
                 666555555540..........1455555566686677777777777*******************************.7788777.************ PP

                 GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHH.SS--..B--..-HHHHHHHH-TTS-H.HHHHHHHHHHHH...-B.-HT--GG....G CS
        Sec1 316 pelqeekkklskHtnlaeellkevkkrkldellelEqdlat.gesd.kkikekkvieeliaddeptseledklRLlllyslvegglkekelkellrelv 412
                 ++lq+e+++l +Ht l+e l+  ++++++++ le++q+l++    d ++++    ie+lia++++   ++++lRLl+l+s+v gg+k+k l++l+re++
  CDO73039.1 360 GGLQSEHQSLRLHTGLSEMLVPMTRTEEFNKSLEIQQNLLAlY--DvNAQITA--IEDLIAQGAD---MRTVLRLLCLASIVVGGVKAKPLENLKREIL 451
                 ****************************************953..65788855..*******999...99************89*************** PP

                 GHHHHGGGGG..........---.BGGG-------.....................---------S.........TT-----HHHHHHHHHTTT-S-TT CS
        Sec1 413 qsalygleylktlrslek..lgllkkrkgkksskkkss..............lklikeeedeesnyd......lsgvsryaPllvrlvealikgkklss 489
                 q + yg++yl +l sl++  l +l ++    +++++                l    e++d+ ++ +      +sg   +aP++vrlv+++ +++   s
  CDO73039.1 452 Q-T-YGYNYLPLLLSLAAppLAILVPHPLPPHAPPSVAelkypysslrkslrL--LIEDVDQLEELEndisyvYSG---FAPISVRLVQCVAQKGGVLS 543
                 *.8.**************998899999997777776669******99999552..444444444333454555566...**************999999 PP

                 TS-BSS-GGGS----.........................................----------------------S-EEEEEEEEEE-HHHHHHHH CS
        Sec1 490 espslskkdpsqees.........................................ssslrsakktnsaskesaekkkkqrviVffvGGvTysEiralr 547
                 +  + ++++++  e+                                         +++++s+ ++ s+ + ++++    +++Vff+GGvTy+Ei+alr
  CDO73039.1 544 NPATEKDRKGAGGEDgskkppsgpmvqahpivgwkgfedvvasipgetvdivqrlpGAQDGSTLPPVSTLMLPRDR--TTTTVVFFLGGVTYTEIAALR 640
                 99999999888888899**********************************9998844444444444444444444..489****************** PP

                 HHT...TSSSEEEEEEEEE--HHHHHH. CS
        Sec1 548 llskqekknkeiiigttsilnpksflee 575
                 ++++q+ k+++++i+tt+i++++s++++
  CDO73039.1 641 WVARQN-KGRKFLIATTGIISGNSLIDS 667
                 ***986.8899**************985 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.76   6.8e+03      68      86 ..      23      41 ..      19      69 .. 0.56
   2 ?    1.1   0.0     0.032   2.9e+02      87     116 ..     252     304 ..     193     314 .. 0.62
   3 ?    1.4   0.2     0.027   2.4e+02     137     161 ..     393     417 ..     376     419 .. 0.90
   4 ?    7.0   0.0   0.00053       4.8     162     179 ..     578     595 ..     570     596 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.76
                XXXXXXXXXXXXXXXXXX. CS
    SpoIIIAH 68 esesseksdiassdedead 86
                +s+s+ +s++a+s++d+++
  CDO73039.1 23 TSTSAPQSEAAASKTDASA 41
                3344444444444444433 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.032
                 .........................XXXXXXXXXXX--HHHHHHHHHHHHHHH CS
    SpoIIIAH  87 e.......................ltsetasaaasasdyfaeakleReqkrsk 116
                 e                         ++++saaa++s+ +  a l++e+kr  
  CDO73039.1 252 EligiknshvelpvslvspptgsnQGEASSSAAAASSSTLNAASLTKEKKRKY 304
                 05555555555555555555555545666677788889999999999999875 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHHHHHHHHHHT CS
    SpoIIIAH 137 eAqqqlleltekeekenaiEelLka 161
                 e qq+ll+l + + +++aiE l+ +
  CDO73039.1 393 EIQQNLLALYDVNAQITAIEDLIAQ 417
                 789*******************975 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.00053
                 TS-SEEEEE-SSSEEEEE CS
    SpoIIIAH 162 kGFsdavVsieddsvdVv 179
                 kGF+d+v si +++vd+v
  CDO73039.1 578 KGFEDVVASIPGETVDIV 595
                 9***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4516.08
//
Query:       CDO73040.1  [L=72]
Description: hypothetical protein BN946_scf185007.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-08   32.8   0.5      1e-07   32.7   0.5    1.1  1  YABBY     YABBY protein
     0.0076   16.8   1.5       0.01   16.4   1.5    1.3  1  Ccdc124   Coiled-coil domain-containing protein 124 /Oxs1
  ------ inclusion threshold ------
      0.015   15.7   0.4      0.023   15.1   0.4    1.3  1  HMG_box   HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> YABBY  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.5   1.7e-11     1e-07     105     154 ..      19      67 ..       1      71 [. 0.68

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.7e-11
       YABBY 105 kvvnrppekrqRvPsaYnrFikeeiqRikaenPdishreaFsaaaknWah 154
                 + ++ ++  r++    +n+F++ e+ R+k enPd+ h++ F     nW +
  CDO73040.1  19 RRKSSSAGGRKK-LTDFNKFMQTEVARLKQENPDMPHKDRFKLVIDNWNK 67 
                 222233333433.3579*******************************76 PP

>> Ccdc124  Coiled-coil domain-containing protein 124 /Oxs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.5   1.7e-06      0.01      81     123 ..      27      69 ..       3      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
     Ccdc124  81 ekrlkAaYkafeeeeLprlkeenpgLrlsQlkqllkkewkksp 123
                  ++    +++f ++e++rlk+enp + ++   +l+  +w+k  
  CDO73040.1  27 GRKKLTDFNKFMQTEVARLKQENPDMPHKDRFKLVIDNWNKQK 69 
                 56666789********************************986 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.4   3.8e-06     0.023       5      45 ..      31      71 ..      28      72 .] 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-06
                --HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHH CS
     HMG_box  5 lsafflfskeqraklkaenPelknaeiskklgekWkalsee 45
                l+ f+ f++ + a lk+enP++  ++  k + + W++ +e+
  CDO73040.1 31 LTDFNKFMQTEVARLKQENPDMPHKDRFKLVIDNWNKQKES 71
                7889**********************999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 553.76
//
Query:       CDO73041.1  [L=963]
Description: hypothetical protein BN946_scf185007.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00078   19.3   1.0        1.9    8.7   0.0    5.4  6  LRR_6       Leucine Rich repeat
    0.00095   19.0   1.3     0.0018   18.1   0.1    2.1  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.28   2.5e+03       3      14 ..     533     544 ..     532     551 .. 0.79
   2 !    8.7   0.0   0.00022       1.9       2      24 .]     584     607 ..     583     607 .. 0.94
   3 ?   -2.1   0.0      0.65   5.8e+03       4      18 ..     618     633 ..     616     633 .. 0.86
   4 ?    2.1   0.0      0.03   2.7e+02       5      23 ..     645     664 ..     642     665 .. 0.87
   5 ?   -0.3   0.0      0.17   1.5e+03       4      17 ..     701     715 ..     700     722 .. 0.80
   6 ?    0.5   0.0     0.092   8.3e+02       3      18 ..     753     769 ..     751     774 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.28
       LRR_6   3 thLteLdLsgNd 14 
                 t +t+ dL+g+ 
  CDO73041.1 533 TRITTIDLQGCT 544
                 678999**9997 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00022
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaLa 24 
                 ++++ +Ld+s +  ++ eG+ +La
  CDO73041.1 584 CPKVVSLDISRCSnLDAEGIRSLA 607
                 89999****************998 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.65
       LRR_6   4 hLteLdLsgNd.IgDe 18 
                 +L+ L L g + ++De
  CDO73041.1 618 CLKVLRLGGLKrVTDE 633
                 799****999988887 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.03
       LRR_6   5 LteLdLsgNd.IgDeGaeaL 23 
                 L+ LdLs+   + ++G+ a+
  CDO73041.1 645 LEVLDLSYARdLHNSGIDAF 664
                 99******999999999886 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.17
       LRR_6   4 hLteLdLsgNd.IgD 17 
                  L++  Ls++  ++D
  CDO73041.1 701 RLRHIALSSCPmLTD 715
                 6999******98888 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.092
       LRR_6   3 thLteLdLsgNd.IgDe 18 
                 ++++ LdL + + I+D+
  CDO73041.1 753 PYIRRLDLEDACeITDA 769
                 57899*****999*996 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1     2e-07    0.0018       3      43 ..     405     476 ..     404     478 .. 0.68
   2 ?   -3.3   0.1      0.96   8.6e+03      28      35 ..     693     700 ..     692     702 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-07
  F-box-like   3 rLPdEiLlqIF......syLppsd...............................LlrlalVCrrWrrvaldtplLWr 43 
                 +LP E+ l+++            +                               Ll l++V++ W+++++d  +LW 
  CDO73041.1 405 YLPRELRLKVLasfvdlY-----EedhrravangrwtarkagrnrwvgiergiveLLKLSRVSKAWQSLVYDG-QLWI 476
                 789999999996444440.....33455555555555555555555555555555******************.***5 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.96
  F-box-like  28 CrrWrrva 35 
                 +++W+rv+
  CDO73041.1 693 SKYWKRVT 700
                 79999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6873.13
//
Query:       CDO73042.1  [L=299]
Description: hypothetical protein BN946_scf185007.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-17   64.2   0.1    3.8e-17   62.7   0.1    1.9  1  Sas10_Utp3  Sas10/Utp3/C1D family
  ------ inclusion threshold ------
       0.07   13.5   0.9       0.48   10.8   0.6    2.5  2  UPF0184     Uncharacterised protein family (UPF0184)
       0.18   11.7   0.6       0.29   11.0   0.6    1.3  1  HSBP1       Heat shock factor binding protein 1
       0.38   11.7   0.3       0.38   11.7   0.3    3.1  3  BHD_2       Rad4 beta-hairpin domain 2


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.1   8.4e-21   3.8e-17       1      87 []      12      90 ..      12      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 8.4e-21
  Sas10_Utp3  1 leslsksldelqeslepllskakaeekkslsd..eklsegisllslKnelllaYllnlllylllklsgvelkdhpvvkeLvrlRvyleK 87
                l+sl++sld+l+e+l+pll+       ++l++   +l+    ++++K+++ + Yl + l++++lk++g+++k+hpvv+eL r+R+y++K
  CDO73042.1 12 LDSLNDSLDALEEKLDPLLA-------QTLPEslLPLET---IQQVKLNVAIPYLVYDLVFIYLKTRGIDPKTHPVVAELDRVRQYFDK 90
                789*****************.......466665556666...*********************************************98 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00011      0.48      33      55 ..      10      32 ..       3      51 .. 0.86
   2 ?   -1.1   0.0      0.55   2.5e+03      34      50 ..      80      96 ..      75     129 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     UPF0184 33 smLDqinsaLDalEernDdlnsk 55
                  LD +n  LDalEe+ D l ++
  CDO73042.1 10 AKLDSLNDSLDALEEKLDPLLAQ 32
                579***************99887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
     UPF0184 34 mLDqinsaLDalEernD 50
                 LD +  + D++ + +D
  CDO73042.1 80 ELDRVRQYFDKIKNAED 96
                46666666666666555 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   6.4e-05      0.29      22      49 ..       5      32 ..       1      33 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.4e-05
       HSBP1 22 sdqilsriDdMssriDdLEksiadlmtq 49
                sd++l ++D +   +D LE+ ++ l  q
  CDO73042.1  5 SDKLLAKLDSLNDSLDALEEKLDPLLAQ 32
                89******************99988776 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         2   9.1e+03      14      33 ..      92     111 ..      90     134 .. 0.54
   2 ?   11.7   0.3   8.5e-05      0.38      16      55 ..     154     191 ..     150     196 .. 0.83
   3 ?   -4.4   4.9         4   1.8e+04      25      25 ..     251     251 ..     201     298 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
       BHD_2  14 kpgelPvKrvksraktarkk 33 
                 k  e P Kr     k+a+++
  CDO73042.1  92 KNAEDPEKRKNTVDKAAANR 111
                 55555555555533333333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.5e-05
       BHD_2  16 gelPvKrvksraktarkkredekkeeeeeeeegevpLYge 55 
                 + +PvK++ + +++a+ + e ++  ++++eee+e + Yge
  CDO73042.1 154 SSIPVKVTSKMRARAEYEKELAA--QGSDEEEEELEVYGE 191
                 568******99988888877666..788899999999998 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 4
       BHD_2  25 s 25 
                 +
  CDO73042.1 251 K 251
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1374  (0.0766356); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2140.16
//
Query:       CDO73043.1  [L=86]
Description: hypothetical protein BN946_scf185007.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-35  120.4   0.0    3.1e-35  120.1   0.0    1.0  1  SF3b10    Splicing factor 3B subunit 10 (SF3b10)


Domain annotation for each model (and alignments):
>> SF3b10  Splicing factor 3B subunit 10 (SF3b10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   1.7e-39   3.1e-35       2      78 .]       6      82 ..       6      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 1.7e-39
                XXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHT--HHHHHHHHHHCTSSTT---- CS
      SF3b10  2 klreqqqlehlkskYvGtGhadttkeEWltnihRDtyaSlvgHsalleYfaiaeneskarvrlellekmlqpcgppp 78
                ++++++qlehl+++Y+GtGhad tk+EWlt++hRDt+aS+vgH++l +Y+aia++e + r+++e++e+mlqpcgppp
  CDO73043.1  6 RYTANTQLEHLHARYTGTGHADLTKYEWLTHQHRDTLASIVGHPPLTSYLAIADGEAVGRIKFEMTERMLQPCGPPP 82
                78899**********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 600.99
//
Query:       CDO73044.1  [L=774]
Description: hypothetical protein BN946_scf185007.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-16   58.9   0.0    1.3e-15   57.9   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    2.6e-13   50.4   0.0    6.5e-13   49.1   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    1.5e-10   41.1   0.0    2.9e-10   40.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.1e-09   35.3   0.0    1.2e-08   34.6   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.4e-08   35.4   0.0    3.8e-08   34.0   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
    2.5e-07   30.6   0.0    4.9e-07   29.7   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.046   13.7   0.0    1.6  1  Methyltransf_32  Methyltransferase domain
      0.024   14.2   0.0      0.072   12.6   0.0    1.7  2  MTS              Methyltransferase small domain
       0.11   12.3   0.0        6.2    6.6   0.0    2.2  2  Methyltransf_8   Hypothetical methyltransferase
       0.12   11.0   0.0       0.18   10.3   0.0    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
       0.17   12.0   0.0       0.31   11.1   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   7.7e-19   1.3e-15       1      97 []     219     324 ..     219     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 7.7e-19
                      EEEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT.....TEEEEESBC..CGBSSSTTTEEEEEEESTGGGSSHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl.....nvefvqgda..edlpfedgsfDlvvssgalhhlsdedleka 85 
                      vLdlGcG+G ++l++ak +  ++ kvtg+D+ +   ++a e + + ++     nv++ ++++   +lpf+d+sfDlv +++   +++ ++++ +
       CDO73044.1 219 VLDLGCGEGFWVLHAAKMWksHHTKVTGLDLIDMHNNNAGEVHPQLEPaytskNVTWFRANFvkYELPFPDDSFDLVRMANLTLCIPINRWRFV 312
                      9*****************97549********9999999998888866667889*********76779************8775558999***** PP

                      HHHHHHHEEEEE CS
  Methyltransf_25  86 lkeiarvLkpgG 97 
                      l++++rvLkpgG
       CDO73044.1 313 LAQVRRVLKPGG 324
                      ***********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0     4e-16   6.5e-13       1      94 [.     220     326 ..     220     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 4e-16
                      EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-.....EEEETTEECCC..TSS-TT-EEEEEEES-CCC-..CCHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl.....kvefvvadaek..lpfednsfDlvvssevlhhv..edpekal 81 
                      Ld+GcG G  + + ak      ++v+g+Dl +   + a e  ++ ++     +v++ +a++ k  lpf+d+sfDlv + +    +  ++++ +l
       CDO73044.1 220 LDLGCGEGFWVLHAAKMWkshhTKVTGLDLIDMHNNNAGEVHPQLEPaytskNVTWFRANFVKyeLPFPDDSFDLVRMANLTLCIpiNRWRFVL 313
                      8**************5545557*******988888777666666666899999********96669**********999988877899****** PP

                      HHHHHHEEEEEEE CS
  Methyltransf_11  82 keiaRvLkpgGll 94 
                      ++++RvLkpgG+l
       CDO73044.1 314 AQVRRVLKPGGRL 326
                      ***********98 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.8e-13   2.9e-10      20     122 ..     213     333 ..     191     350 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.8e-13
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf....svtgvDlspeaveiae.............kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp 96 
                      ++++++vLd+GcG+G +  ++++ ++    +vtg Dl ++ ++  +             k  +++  +f   e ++p+++fdl+ + +++  +p
       CDO73044.1 213 KKPPAEVLDLGCGEGFWVLHAAKMWKshhtKVTGLDLIDMHNNN-AgevhpqlepaytsKNVTWFRANFVKYELPFPDDSFDLVRMANLTLCIP 305
                      78999**********9999997765444569******8654444.4588899998888888888888888889999**********99999999 PP

  Methyltransf_23  97 .d.ppellrqiatllkpgGylllsepla 122
                       + +  +l+q+++ lkpgG+l+l + ++
       CDO73044.1 306 iNrWRFVLAQVRRVLKPGGRLELIDDDV 333
                      856*******************988765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   7.1e-12   1.2e-08      43     152 ..     211     329 ..     204     334 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 7.1e-12
                      --S--TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHH...HHHHHHHHHHHTSS..TEEEEE--..TTT-TTS-T-EEEEEEES-GGG CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenm...Lkvgekklkeegki..nieflqan..aeeLpfeddsfDvvtvsfGlrn 128
                       ++k++a+vlD+ +G g + ++ +++ +++  kv++lD+ ++      + + +l+    +  n+ +  an    eLpf ddsfD+v ++     
       CDO73044.1 211 FGKKPPAEVLDLGCGEGFWVLHAAKMWKSHHtKVTGLDLIDMHnnnAGEVHPQLEPAY-TskNVTWFRANfvKYELPFPDDSFDLVRMANLTLC 303
                      578999***************9999988765577777765443000333334444332.246********33458***********98754444 PP

                      ..-S-HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 129 ..vtDklkaLkeayrvlkpGGrlvvl 152
                        +     +L +++rvlkpGGrl  +
       CDO73044.1 304 ipINRWRFVLAQVRRVLKPGGRLELI 329
                      014456789*************9877 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   2.3e-11   3.8e-08       1      99 []     220     326 ..     220     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.3e-11
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakre.nnnnnnvelealdlldldgg...ssfDlvvasnvlhhl..kdirevl 86 
                      L++GcG G  + + ++    +++++tg+D+     ++a e + + e ++  +nv+++  +  + + +   +sfDlv ++n+  ++  + +r+vl
       CDO73044.1 220 LDLGCGEGFWVLHAAKMWksHHTKVTGLDLIDMHNNNAGEVHPQLEpAYTSKNVTWFRANFVKYELPfpdDSFDLVRMANLTLCIpiNRWRFVL 313
                      8*******9999998888999********99988877777666655156778888888888877777888***************9******** PP

  Methyltransf_12  87 dnirklLkpgGrl 99 
                      +++r++LkpgGrl
       CDO73044.1 314 AQVRRVLKPGGRL 326
                      ***********97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     3e-10   4.9e-07       5     107 ..     217     326 ..     213     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3e-10
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgp..kaevvGiDiseeaielArenaqklgld....nveFeqgdieelekl.ledekfDlilsnevl..nalad 89 
                       +vlDlGCG+G+ ++ +a+ + +  + +v+G+D      + A e   +l+      nv+  ++++ + e l + d++fDl+   ++     ++ 
       CDO73044.1 217 AEVLDLGCGEGFWVLHAAK-MWKshHTKVTGLDLIDMHNNNAGEVHPQLEPAytskNVTWFRANFVKYE-LpFPDDSFDLVRMANLTlcIPINR 308
                      68****************5.54423666******9999999999777776555567*********9966.55********96654443889999 PP

  Methyltransf_31  90 pdkileeiervlkpggil 107
                         +l ++ rvlkpgg+l
       CDO73044.1 309 WRFVLAQVRRVLKPGGRL 326
                      999*************98 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.046      22      80 ..     212     270 ..     197     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
  Methyltransf_32  22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnk 80 
                       ++++ +v+D+G+G+g+     a   k +++kv+g+d+ + ++++a ++  +l+ ++++
       CDO73044.1 212 GKKPPAEVLDLGCGEGFWVLHAAKMWKSHHTKVTGLDLIDMHNNNAGEVHPQLEPAYTS 270
                      4677899**********877777744569*******************99999977744 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.4e-05     0.072      29      62 ..     213     246 ..     193     274 .. 0.81
   2 ?   -2.3   0.0       1.8   2.9e+03     122     138 ..     313     329 ..     308     332 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
                 CCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEE CS
         MTS  29 kelsgkvlDlGcGaGvlgaalakespeaevtlvd 62 
                 k+   +vlDlGcG G+  +++ak++++++ +++ 
  CDO73044.1 213 KKPPAEVLDLGCGEGFWVLHAAKMWKSHHTKVTG 246
                 445568*****************99988766554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                 HHHHHHHEEEEEEEEEE CS
         MTS 122 iaeAkeaLkegGeLliV 138
                 +a+ +++Lk+gG+L ++
  CDO73044.1 313 LAQVRRVLKPGGRLELI 329
                 678899*******9876 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.042        69      71     105 ..     214     253 ..     196     259 .. 0.68
   2 ?    6.6   0.0    0.0038       6.2     115     157 ..     284     329 ..     278     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.042
                     -TTS-EEEES-TT-HHH.....HH--S-..EEEEESS-SS CS
  Methyltransf_8  71 kdnlvvadlGcGeakia.....eavrekekvrsfdlvavn 105
                     k    v dlGcGe         + +++++kv  +dl  ++
      CDO73044.1 214 KPPAEVLDLGCGEGFWVlhaakMWKSHHTKVTGLDLIDMH 253
                     4456689******743222223446677789999998765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0038
                     S-S--TT-EEEE...EEES---SS-HHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_8 115 kvPledesvdva...vfclslmgtnladflkeanrvlkvGGllkva 157
                     ++P  d+s d++    + l +  + ++  l +++rvlk+GG l + 
      CDO73044.1 284 ELPFPDDSFDLVrmaNLTLCIPINRWRFVLAQVRRVLKPGGRLELI 329
                     5799999998752114456777899****************99765 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011      0.18     120     214 ..     218     325 ..     203     334 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
  Methyltransf_29 120 tvlDvGCgvasf...gayllsrd.vltlslapkDehea...qvqfaLe.....RgvpailavlgtkrlpyPsrsfdlihCsrCridwtee.dgi 200
                       vlD+GCg   +   +a +++++      l   D h++    v   Le     + v  + a + +  lp+P  sfdl++ +   +    +    
       CDO73044.1 218 EVLDLGCGEGFWvlhAAKMWKSHhTKVTGLDLIDMHNNnagEVHPQLEpaytsKNVTWFRANFVKYELPFPDDSFDLVRMANLTLCIPINrWRF 311
                      58999999887733357777654144445777777776223355556533333567778899999**************999776554440467 PP

  Methyltransf_29 201 lllevdRvlRpgGy 214
                      +l  v Rvl+pgG 
       CDO73044.1 312 VLAQVRRVLKPGGR 325
                      899*********95 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.31      20      58 ..     214     261 ..     197     285 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                 -TT-EEEECT-TTSHHHHHHCCT.T..-SEEEEEESSSS........H CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlga.kgkvvavDlqpm........a 58 
                 kp   v+Dlg++ G w   +++  +  ++kv ++Dl  m        +
  CDO73044.1 214 KPPAEVLDLGCGEGFWVLHAAKMWKShHTKVTGLDLIDMhnnnagevH 261
                 35567***************99985546********999665555441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5349.74
//
Query:       CDO73045.1  [L=293]
Description: hypothetical protein BN946_scf185007.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-73  246.3  16.4    1.9e-41  142.1   5.4    2.0  2  Mg_trans_NIPA  Magnesium transporter NIPA


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   3.9   1.9e-36   3.5e-32       2      88 ..       4      90 ..       3      91 .. 0.98
   2 !  142.1   5.4     1e-45   1.9e-41     153     293 ..      89     229 ..      88     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 1.9e-36
  Mg_trans_NIPA  2 dfliGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsviv 88
                   d++iG+ La+s+s+ igssfil kkgl+++++     a++  ++y+k++lWwaG+ +m++Ge+anfaayafaP +LvtPLGalsvi+
     CDO73045.1  4 DKYIGLALAISGSVGIGSSFILTKKGLIQASNASAYAAASDSHSYFKSPLWWAGMCLMVAGEIANFAAYAFAPPILVTPLGALSVII 90
                   789**********************************************************************************97 PP

  == domain 2  score: 142.1 bits;  conditional E-value: 1e-45
  Mg_trans_NIPA 153 vvvlvlilyveprkGktnilvyitlcsllgsltvisvkalgiaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvl 248
                    ++ l++i++v pr+G+ n lvyi +csl+gs++v+++k+lgia+klt+aG++q+  + ++++  ++  c+v+q+ny+nkald+f+t +v P+yyv 
     CDO73045.1  89 IIGLCMIYFVVPRYGRSNPLVYISICSLVGSVSVMAIKGLGIAVKLTFAGNNQFGRPATYVFGFLVAGCIVVQMNYFNKALDTFSTNVVNPMYYVG 184
                    6889******************************************************************************************** PP

  Mg_trans_NIPA 249 fttlvivasailfkefleasvddvlgelsGfllvllgvfllhatr 293
                    f t +ivas+ilf+  +  + ++ l+ l+Gf++ +lgv ll+  r
     CDO73045.1 185 FSTATIVASIILFQGINTDDPANTLSLLAGFITTFLGVHLLELSR 229
                    ****************************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2302.31
//
Query:       CDO73046.1  [L=525]
Description: Laccase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-49  168.7   0.2    6.5e-48  162.8   0.0    3.0  3  Cu-oxidase    Multicopper oxidase
    1.4e-39  134.8   1.1    2.9e-38  130.6   0.4    2.9  3  Cu-oxidase_3  Multicopper oxidase
    9.7e-34  116.0  10.4      1e-32  112.7   0.1    3.4  3  Cu-oxidase_2  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.033   1.9e+02      37     136 ..      43     131 ..      25     144 .. 0.65
   2 !  162.8   0.0   1.1e-51   6.5e-48       2     159 .]     163     305 ..     162     305 .. 0.93
   3 ?   -1.2   0.0      0.32   1.9e+03      82      99 ..     416     433 ..     412     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.033
                 SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BE..EEEETSB-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE.-SSSEEE CS
  Cu-oxidase  37 davlingkggfnatladkdgaslatltvepgktyrlriinvsaddsl..nfsIeGHkltVvevDgvyve.pvevdsldIavGqrysvlvta.nqapgnY 131
                 dav++ng            ++  + ++ ++g+  +l ++n+ +++++  + sI+ H   + ++  ++ + p+ v++  Ia+G ++   ++  +q  g+Y
  CDO73046.1  43 DAVVVNG------------AFPGPLISGKKGDHFQLNVVNQLTNHTMlkTTSIHWH--GLFQAHTNWADgPAFVNQCPIASGHSFLYDFHVpDQ-AGTY 126
                 5666666............4555666666777777777654443333234556666..556677777778888899999999876555555454.9999 PP

                 EEEEE CS
  Cu-oxidase 132 wivas 136
                 w++ +
  CDO73046.1 127 WYHSH 131
                 99885 PP

  == domain 2  score: 162.8 bits;  conditional E-value: 1.1e-51
                 EEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCE CS
  Cu-oxidase   2 eyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgv 100
                 ++vitl+Dwyh +ak            ++++p  +da+ling g+ + + ++    +la+++ve+gk+yr+r++++s+d++++fsI+GH++t++evDgv
  CDO73046.1 163 DTVITLADWYHVAAKL-----------GPQFPRSADATLINGLGRSATSSST---GELAVINVEHGKRYRFRLVSISCDPNYKFSIDGHNMTIIEVDGV 247
                 79*********77777...........678999************9977555...89****************************************** PP

                 TTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEE.GSSSCHHHHTTSEEEEEEEESTT CS
  Cu-oxidase 101 yvepvevdsldIavGqrysvlvtanqapgnYwivas.grsnlieafengtaaailrysea 159
                 + +p++vds++I+++qrys++++anq+++nYwi+a+ g++   ++f+ g ++ailry++a
  CDO73046.1 248 NSKPLTVDSIQIFAAQRYSFVLNANQPVDNYWIRANpGTG--VANFTGGLNSAILRYKGA 305
                 ***********************************96554..599************986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.32
                 BEEEEETSB-EEEEEETC CS
  Cu-oxidase  82 slnfsIeGHkltVvevDg 99 
                  ++f ++GH + Vv + g
  CDO73046.1 416 PHPFHLHGHVFAVVRSAG 433
                 589**********98765 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.4   4.8e-42   2.9e-38       5     118 ..      33     150 ..      29     151 .. 0.91
   2 ?   -1.1   0.0       0.3   1.8e+03      54      88 ..     237     270 ..     208     297 .. 0.64
   3 ?    0.8   0.0     0.079   4.7e+02      76     108 ..     458     489 ..     450     495 .. 0.85

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 4.8e-42
                   EEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-.....B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEE CS
  Cu-oxidase_3   5 ktvsplggterevitvNgqfpgptievregdtvvvnvtNklden.....tsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwY 96 
                   + v+p+g++ r++++vNg+fpgp i  ++gd  ++nv+N+l+++     tsihwhGl q  t+w+DG+++v qcpi++g+sf y f v +qagt+wY
    CDO73046.1  33 AVVNPDGTP-RDAVVVNGAFPGPLISGKKGDHFQLNVVNQLTNHtmlktTSIHWHGLFQAHTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTYWY 128
                   557788866.*******************************5532333389********************************************** PP

                   EE--TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  97 hshlslqqaaGlaGaiiiedke 118
                   hshls+q+ +Gl G+++++d++
    CDO73046.1 129 HSHLSTQYCDGLRGPLVVYDPH 150
                   *******************985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
                   ET--S-GG.....GSC..SGGG-B-TT-EEEEEEE-- CS
  Cu-oxidase_3  54 hGlqqrktswmDGvpg..vtqcpiqpgesftyrftvk 88 
                   h + + +    DGv+   +t + iq  + ++y+f ++
    CDO73046.1 237 HNMTIIE---VDGVNSkpLTVDSIQIFAAQRYSFVLN 270
                   4444433...488765335667777777777766544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.079
                   -TT-EEEEEEE--S-SEEEEEEE--TTHHHTT- CS
  Cu-oxidase_3  76 qpgesftyrftvkqqagtlwYhshlslqqaaGl 108
                   qpg+s+t rf  ++  g  + h h++++  aG 
    CDO73046.1 458 QPGDSVTIRFMTDN-PGPWFLHCHIDFHLDAGF 489
                   89********9999.9*9999***999866665 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   5.4    0.0089        53      47     133 ..      72     146 ..      42     150 .. 0.71
   2 ?   -1.5   0.0      0.32   1.9e+03      34      85 ..     208     249 ..     188     285 .. 0.66
   3 !  112.7   0.1   1.7e-36     1e-32       2     136 ..     367     498 ..     366     499 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0089
                   EEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S-EEEEEEESSHHHHHTT-EEEEEE CS
  Cu-oxidase_2  47 iqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfka.dnpGvwllHCHilwHldqGmalqfvv 133
                   ++n+t+l + ++H+HG  fq   + +             + p   +   + +g  + + f++ d++G + +H+H+      G+ + +vv
    CDO73046.1  72 LTNHTMLkTTSIHWHGL-FQAHTNWA-------------DGPAFVNQCPIASGHSFLYDFHVpDQAGTYWYHSHLSTQYCDGLRGPLVV 146
                   44455558889999998.55542222.............3356667788999999999999989**********997666666666655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
                   EEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCC CS
  Cu-oxidase_2  34 vitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynle 85 
                   vi++++g++ ++ +   +   +  f ++Gh++ +++ ++ n           +
    CDO73046.1 208 VINVEHGKRYRFRLVSISCDpNYKFSIDGHNMTIIEVDGVN-----------S 249
                   66777777777776665555455566788888888777766...........3 PP

  == domain 3  score: 112.7 bits;  conditional E-value: 1.7e-36
                   XS-SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS...-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE CS
  Cu-oxidase_2   2 vppklptllqltsgneeaseitngeefsentnvitlpkgevveiviqnntkl...pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqv 95 
                   +pp++p+llq+ sg+ +a+      ++ +  +v+tlp ++ +ei++ +++     pHPfHlHGh f+v+ r++g+      ++yn+++p+ rd+v++
    CDO73046.1 367 TPPTVPVLLQILSGAHDAQ------DLLPAGSVYTLPRHSAIEITMPATALApgtPHPFHLHGHVFAVV-RSAGS------TEYNYDDPIFRDVVST 450
                   89**********9987665......7788*******************99988899*************.66666......6*************** PP

                   -T.......TEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEECH CS
  Cu-oxidase_2  96 pp.......ggwvairfkadnpGvwllHCHilwHldqGmalqfvvrpd 136
                    +       g+ v+irf +dnpG+w+lHCHi++Hld+G+a++f+++ +
    CDO73046.1 451 GNppsngqpGDSVTIRFMTDNPGPWFLHCHIDFHLDAGFAIVFAEDVQ 498
                   4444555669**********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.54
# Mc/sec: 2910.82
//
Query:       CDO73047.1  [L=476]
Description: hypothetical protein BN946_scf185007.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-50  170.2   0.1      8e-50  169.6   0.1    1.3  1  WLM             WLM domain
    9.7e-05   21.6   0.8    9.7e-05   21.6   0.8    3.1  2  zf-RanBP        Zn-finger in Ran binding protein and others
     0.0022   18.1   3.2     0.0059   16.7   3.2    1.6  1  DUF45           Protein of unknown function DUF45
  ------ inclusion threshold ------
      0.025   14.6   5.9         17    5.6   0.7    3.4  3  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
      0.049   14.1   8.4       0.99    9.9   0.0    2.5  2  SVIP            Small VCP/p97-interacting protein
      0.083   12.9   2.0       0.18   11.9   2.0    1.6  1  DZR             Double zinc ribbon
       0.19   11.5   4.0         10    6.0   0.0    3.1  3  zf-MIZ          MIZ/SP-RING zinc finger
       0.22   11.8   9.9        0.8   10.0   2.4    2.8  2  zf-4CXXC_R1     Zinc-finger domain of monoamine-oxidase A rep
       0.63   10.0   3.6         15    5.6   1.7    2.7  2  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
        5.5    7.0  11.0        2.8    7.9   0.7    3.5  3  HalOD2          Halobacterial output domain 2
        8.6    6.8   6.8         37    4.7   5.4    2.3  2  C1_2            C1 domain


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.1   4.9e-53     8e-50       3     190 ..       6     194 ..       4     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 4.9e-53
         WLM   3 iseikvlkkkpekeaalellkriakdvqpimkkhkfkVglLtElaPkeanlLGlNvnkGekieLrLRtdkddkeflpyesimgtllHELaHnvygpHda 101
                 ++ +++lk+ p+ ++al ll+ria+ v+pim+kh++   +L+E++P+++nlL   +n G+ki +rLR ++  + f + e++++t+lHEL+Hnv+g Hd+
  CDO73047.1   6 VKAFTHLKDLPHADKALPLLQRIASLVKPIMRKHGWVLPVLSEFYPESPNLL--DINAGQKILVRLRPAHAPDTFYDEEDVVHTMLHELTHNVHGSHDE 102
                 56789**********************************************8..5678***************************************** PP

         WLM 102 kFyallkeLekeveelkakGlk.egflkeGkrlggkevrnksa......eeeeekealekagiagkgarlGgrseektrskasareliaaAaerRl 190
                 kFy++l+eLe+++e+l+  G+  egf++ G+rlg + ++n +       ++++ ++  +++ i g+g rlGg +    rs++s rel+a+AaerR+
  CDO73047.1 103 KFYKHLSELEEDYENLRKSGYSgEGFHSDGRRLGTNFSHNLPPhiarqkAVAAAEKRKQISAILGGGGRLGGGA----RSDKSLRELAAEAAERRA 194
                 **********************************9999987774444444444444445555555555555555....69***************7 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.8   5.9e-08   9.7e-05       1      24 [.     408     431 ..     408     436 .. 0.97
   2 ?   -1.4   8.1      0.91   1.5e+03       3      13 ..     447     457 ..     446     474 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.9e-08
                 GSSSEE-SSS--EEESSSSB-TTT CS
    zf-RanBP   1 regdWdCskClvqNfawstkCvaC 24 
                 re+ W C+ C++ N a ++ C aC
  CDO73047.1 408 REKEWACPRCTLVNDALALQCSAC 431
                 89********************** PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.91
                 SSEE-SSS--E CS
    zf-RanBP   3 gdWdCskClvq 13 
                 + W C++C+ +
  CDO73047.1 447 DTWSCHVCGES 457
                 57******965 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   3.2   3.6e-06    0.0059     170     202 ..      88     120 ..      78     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.6e-06
       DUF45 170 vvHElaHlleknHskrFwalvekllPdwkeakk 202
                 ++HEl+H ++  H ++F++++++l +d+++++k
  CDO73047.1  88 MLHELTHNVHGSHDEKFYKHLSELEEDYENLRK 120
                 68***************************9987 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.011        18      17      34 ..     405     422 ..     402     424 .. 0.84
   2 ?    4.3   0.3     0.026        42      18      31 ..     443     456 ..     440     459 .. 0.86
   3 ?    5.6   0.7      0.01        17      22      31 ..     462     471 ..     458     474 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
  zf-Sec23_Sec24  17 idfggkrwiCnfCnhkne 34 
                     +  + k w C+ C   n+
      CDO73047.1 405 VVPREKEWACPRCTLVND 422
                     5678899******99997 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.026
  zf-Sec23_Sec24  18 dfggkrwiCnfCnh 31 
                     ++++ +w C  C+ 
      CDO73047.1 443 QDDTDTWSCHVCGE 456
                     78899*******85 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.01
  zf-Sec23_Sec24  22 krwiCnfCnh 31 
                      +w+C fC++
      CDO73047.1 462 DLWTCTFCGS 471
                     57******86 PP

>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00061      0.99      19      37 ..     143     161 ..     136     167 .. 0.83
   2 ?    2.7   7.2       0.1   1.7e+02      23      40 ..     181     198 ..     176     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00061
        SVIP  19 pdaeerRrqqaEAAekRqe 37 
                 + +  +R++++ AAekR++
  CDO73047.1 143 LPPHIARQKAVAAAEKRKQ 161
                 567899***********98 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
        SVIP  23 erRrqqaEAAekRqeeqe 40 
                   R+ +aEAAe+R ++++
  CDO73047.1 181 SLRELAAEAAERRARDEK 198
                 569**********99876 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.0   0.00011      0.18       1      49 []     414     470 ..     414     470 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
         DZR   1 CpqCgeelppdarfCseCgtklkavaa.......edrCpsCgek.vdpearfCpeCG 49 
                 Cp+C   +++ a  Cs+C    +  ++          C  Cge+ ++ +  +C  CG
  CDO73047.1 414 CPRCTLVNDALALQCSACLLLRPGHTEelqddtdTWSCHVCGESgMPRDLWTCTFCG 470
                 ******************876443333677777799********99999999*9998 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0063        10      36      48 ..     406     418 ..     389     420 .. 0.81
   2 ?    5.2   0.1     0.011        18      35      48 ..     442     455 ..     439     457 .. 0.85
   3 ?   -0.5   0.2      0.65   1.1e+03      41      47 ..     463     469 ..     459     471 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0063
                 HHHS---B-TTT- CS
      zf-MIZ  36 nertetWnCPvCs 48 
                   r+++W CP C 
  CDO73047.1 406 VPREKEWACPRCT 418
                 568899******6 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
                 HHHHS---B-TTT- CS
      zf-MIZ  35 lnertetWnCPvCs 48 
                 l++ t tW+C vC 
  CDO73047.1 442 LQDDTDTWSCHVCG 455
                 678899*******6 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.65
                 --B-TTT CS
      zf-MIZ  41 tWnCPvC 47 
                  W C +C
  CDO73047.1 463 LWTCTFC 469
                 6****** PP

>> zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repressor R1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.8     0.013        21      50      63 ..     405     418 ..     399     427 .. 0.81
   2 ?   10.0   2.4   0.00049       0.8      35      69 ..     427     467 ..     421     475 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.013
  zf-4CXXC_R1  50 evaakkeWvCPkCr 63 
                   v ++keW CP+C+
   CDO73047.1 405 VVPREKEWACPRCT 418
                  566789*******7 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00049
  zf-4CXXC_R1  35 fCekClknRygeeveevaakkeWvCPkCrg......iCncs 69 
                   C++Cl  R g++ e + ++++W+C  C +      +  c+
   CDO73047.1 427 QCSACLLLRPGHTEELQDDTDTWSCHVCGEsgmprdLWTCT 467
                  5**********9999999999*******8866666633344 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.043        70      43      58 ..     408     423 ..     383     424 .. 0.88
   2 ?    5.6   1.7    0.0094        15      30      53 ..     450     470 ..     426     474 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.043
  OrfB_Zn_ribbon  43 sgrtfkCpnCgfeadr 58 
                      ++++ Cp+C ++ d+
      CDO73047.1 408 REKEWACPRCTLVNDA 423
                     5789*******99886 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0094
  OrfB_Zn_ribbon  30 tCseCgsknkealsgrtfkCpnCg 53 
                     +C++Cg+ + +   +++++C+ Cg
      CDO73047.1 450 SCHVCGESGMP---RDLWTCTFCG 470
                     47777766666...6677777666 PP

>> HalOD2  Halobacterial output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.1   1.7e+03      32      40 ..     412     420 ..     410     425 .. 0.78
   2 ?    4.3   0.7     0.024        38      29      40 ..     446     457 ..     442     462 .. 0.85
   3 ?    7.9   0.7    0.0017       2.8      30      43 ..     462     475 ..     458     476 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
      HalOD2  32 WkCtrCGev 40 
                 W C rC  v
  CDO73047.1 412 WACPRCTLV 420
                 999999766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
      HalOD2  29 ayvWkCtrCGev 40 
                 +++W C  CGe 
  CDO73047.1 446 TDTWSCHVCGES 457
                 589*******96 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0017
      HalOD2  30 yvWkCtrCGevqaa 43 
                 + W Ct CG v+a+
  CDO73047.1 462 DLWTCTFCGSVKAS 475
                 68*********987 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.5      0.63     1e+03      15      38 ..     408     431 ..     401     435 .. 0.71
   2 ?    4.7   5.4     0.023        37      10      38 ..     443     469 ..     427     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.63
        C1_2  15 ssesfnCsaCgrkidgffYsCseC 38 
                 +++++ C  C    d     Cs C
  CDO73047.1 408 REKEWACPRCTLVNDALALQCSAC 431
                 566677777777755555777777 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.023
        C1_2  10 skgedssesfnCsaCgrkidgff.YsCseC 38 
                 +   d+ ++++C++Cg+++ + +  +C+ C
  CDO73047.1 443 Q---DDTDTWSCHVCGESGMPRDlWTCTFC 469
                 3...78889*********666667***889 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3075.49
//
Query:       CDO73048.1  [L=302]
Description: hypothetical protein BN946_scf185007.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-24   86.4   0.0    4.2e-24   85.7   0.0    1.5  1  Bot1p     Eukaryotic mitochondrial regulator protein


Domain annotation for each model (and alignments):
>> Bot1p  Eukaryotic mitochondrial regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   2.3e-28   4.2e-24       3      90 ..      65     153 ..      63     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 2.3e-28
       Bot1p   3 qPFPlNpsfrsepvlseelreeIyeevakkgk..svrevSvkygvkikRveAivrLkelekkwknkgkpllkkysralekmlPlnapekk 90 
                 qPFPlNp+f++++++s+ +r++I++e++ ++   +vr +++k+g++i Rv+Ai+rLk le++w +kgk+l+  + +++e  l +++p+++
  CDO73048.1  65 QPFPLNPTFKPPSPVSDAVRTAIWDEYMLDPFkyNVRVLAQKHGISIARVDAILRLKGLEHQW-RKGKQLQAGFLKGMEYVLGVTEPRSS 153
                 9*****************************9889*****************************.8****************977555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2179.66
//
Query:       CDO73049.1  [L=1184]
Description: hypothetical protein BN946_scf185007.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.9e-155  516.0   1.6   1.1e-154  515.8   1.6    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
      4e-18   65.5  21.4      4e-18   65.5  21.4    1.4  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.051   12.4   5.4      0.085   11.7   5.4    1.3  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.8   1.6  1.8e-158  1.1e-154       1     489 [.      37     529 ..      37     531 .. 0.98

  Alignments for each domain:
  == domain 1  score: 515.8 bits;  conditional E-value: 1.8e-158
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 ++++++ttlGP+GmdK++vn+ g+ ++TnDGatilk l+i hPaa++lv++a++qd evGDGTt+vv+La++Ll+e+  +i++gv p  i++g+++a+e
  CDO73049.1  37 ISETLATTLGPRGMDKLIVNERGEAQITNDGATILKLLDIVHPAARTLVDIARAQDAEVGDGTTSVVLLAAQLLKEVRGYIEEGVSPHIIMKGFRQAAE 135
                 7899*********************************************************************************************** PP

                 HHHHHHHHHXEEBXSC..STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SST... CS
  Cpn60_TCP1 100 kaleaLkeiaveisse..ekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlsp... 193
                  a+e++k+++++++++  e+ r+ Llk+a+ts+sskl+++e+ +++++vv+Av+++++++  l+ + i+v+ki gg ++ds lv+G+++ k+++++   
  CDO73049.1 136 LAIEHIKSVQITVDKSnaEQFRSLLLKCASTSMSSKLIHSEKPFFANMVVEAVQCLDQED--LNENLIGVKKIPGGGMQDSLLVKGVAFRKTFTYAgae 232
                 *********999888877778999******************************998775..99999****************************9999 PP

                 TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHH CS
  Cpn60_TCP1 194 dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlaka 292
                 + pk ++n+ +l l+v+Le + ++ +++v+++ +++++++++ae++++ ++le+i k+g++vv+++  i dla++++a+++i+++ rv  +dl+r+++a
  CDO73049.1 233 QQPKAFRNPLILSLNVELELKAEKDNAEVRVEHVSDYQAIVDAEWEIIYRKLEAIEKTGAKVVLSKLPIGDLATQWFADRDIFCAGRVPADDLQRVVQA 331
                 99************************************************************************************************* PP

                 HT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCC CS
  Cpn60_TCP1 293 tGatavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeya 391
                 +G+++ s+ +d+++e+lGt++ +ee++ig e++ +++e++++k++ti+lrg  +++++e+er+++dA+ vvk+a++++ +v+GGGa+e+ l+++++++a
  CDO73049.1 332 VGGSIQSTCSDIKREHLGTCGYFEERQIGGERYNLFTECPKAKTCTIILRGGAEQFIEEVERSLHDAIMVVKRAVKNGDIVAGGGAIEMDLSSRIRKHA 430
                 *************************************************************************************************** PP

                 CTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTC.EEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 392 ksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesge.iidlveagvvDplkvkrqalksAteaastiLrideiika 489
                  s++g+ ql++ afakALevip++++ NaGld+++vl+klr +h++gek++g+dv+  e i++ +ea v++p  vk +a++sAteaa++iL++de+++a
  CDO73049.1 431 LSIPGKLQLVMIAFAKALEVIPRQICDNAGLDTTDVLNKLRMKHANGEKHFGVDVDGPEgIRNNLEAFVWEPSLVKVNAINSATEAACLILSVDETVRA 529
                 *******************************************************99988999*********************************987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5  21.4   6.8e-22     4e-18       2     352 ..     692    1069 ..     691    1070 .. 0.80
   2 ?   -4.2   0.1         1   6.1e+03     269     291 ..    1119    1141 ..    1114    1148 .. 0.42

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 6.8e-22
       MFS_1    2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGl 97  
                  ++++f   l+rs+++ a +     dlg++   ++l  tl+ l +++a lp   +s r+G+  ++   ++l+++  l  +++ s+   +l+ r+l G+
  CDO73049.1  692 FVMFFSLELDRSNISQANTDNFLGDLGLTTNDFNLGNTLFKLCFLIAELPSQLVSKRVGPDIWIPSQMVLWSFVsLSQFWL-SGRGSFLATRCLLGF 787 
                  6778888899999999999955599*************************************************3444444.66667********** PP

       MFS_1   98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee 188 
                  ++g+++p ++ +++  ++k+e ++ ++++ +++ l+ i+g+  +  l+ + g      Wr++f+i ++++l+ ++    +++ +p+ +   + + + 
  CDO73049.1  788 MQGGFIPDVILYLSYFYTKSELPLRLAWFWVSNYLADIVGAFMATGLLKLRGvngkagWRYLFLIEGGLTLIIGIS--SYFMMPPS-PTQTKAWFRP 881 
                  *********************************************9999999999999*****************4..44444444.4444444442 PP

       MFS_1  189 ..........................kgtgpaplvp.......awkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllagllla 251 
                                            +        +        +  +lkd  +w  ++al ++f++      t+l+l   + lg+s   +a ll+ 
  CDO73049.1  882 kgwftereetiivnrvlrddpsksnmH--------NrqglsvrMIWNILKDWRMW-PIYALGIVFMVPVNpPQTYLTLS-LKNLGYS-TTQANLLSI 967 
                  356666665555555544444333332........13333334244444555566.55555555444433688888885.9******.899999999 PP

       MFS_1  252 llalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagsl 347 
                   + ++g+il l++ +ls  + +r + ++ l + +l +l  +++   ++++++++++v++ +g+  v p   a+as +  +   +   ++++n++ ++
  CDO73049.1  968 PSKVLGIILLLIFCYLSEIIDSRVISTVLLQFWALPLLVALYTFDQHTSPWVYFAVVTLITGFPYVHPVQVAWASTNSgGVGTRTVSASIYNMFVQA 1064
                  *******************999777777777777777777777777********999999999999999999999998555888899********** PP

       MFS_1  348 ggalg 352 
                  gg+++
  CDO73049.1 1065 GGIVA 1069
                  **997 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1
       MFS_1  269 drlgrrrrlllallllllaalgl 291 
                  d+ g+r  + + +  ++l ++ +
  CDO73049.1 1119 DKRGNRVLIGICVMNIFLYLFVY 1141
                  44444333333333333333333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.4   1.4e-05     0.085     215     323 ..     889    1027 ..     678    1067 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.4e-05
  MFS_1_like  215 l..........................qvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklle 285 
                  +                          + ++nilk+ +++ + +  ++  + +++ +++l+l Lk+lg+s+t +  l +   v+ i+l+++  +l e
  CDO73049.1  889 EetiivnrvlrddpsksnmhnrqglsvRMIWNILKDWRMWPIYALGIVFMVPVNPPQTYLTLSLKNLGYSTTQANLLSIPSKVLGIILLLIFCYLSE 985 
                  055555555555555555556667777899*****************************************98888877777766666666666666 PP

  MFS_1_like  286 klGhvklliiallayilrfllyaii.....enawlvlpievLh 323 
                  ++  +++ ++ l + +l +l+ a++     +++w+ + + +L 
  CDO73049.1  986 IIDSRVISTVLLQFWALPLLV-ALYtfdqhTSPWVYFAVVTLI 1027
                  665554444444444433332.222245879999999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 8146.39
//
Query:       CDO73050.1  [L=1130]
Description: hypothetical protein BN946_scf185007.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-67  227.7   0.0    2.2e-67  227.2   0.0    1.2  1  SNF2_N        SNF2 family N-terminal domain
      9e-18   64.0   0.0    2.6e-17   62.5   0.0    1.8  1  HIRAN         HIRAN domain
    6.5e-15   55.4   0.0    1.3e-14   54.4   0.0    1.6  1  Helicase_C    Helicase conserved C-terminal domain
    1.2e-06   28.6   0.0    4.9e-06   26.7   0.0    2.0  1  ResIII        Type III restriction enzyme, res subunit
    1.6e-06   27.9  13.8    2.9e-06   27.0  13.8    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    4.7e-06   26.5   0.0    9.2e-06   25.5   0.0    1.4  1  DEAD          DEAD/DEAH box helicase
      6e-05   22.8  14.4     0.0003   20.6  14.2    2.2  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0001   22.1  11.0    0.00017   21.4  11.0    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0001   22.2  10.7    0.00026   20.9  10.7    1.7  1  zf-RING_UBOX  RING-type zinc-finger
     0.0011   19.3  12.9      0.002   18.4  12.9    1.5  1  zf-RING_2     Ring finger domain
     0.0053   16.5   7.6     0.0094   15.7   7.6    1.4  1  zf-MIZ        MIZ/SP-RING zinc finger
     0.0094   16.1  14.1      0.018   15.2  14.1    1.5  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.065   12.9   0.0    1.4  1  DEAD_2        DEAD_2
      0.052   13.5  12.5      0.093   12.7  12.5    1.4  1  zf-RING_5     zinc-RING finger domain
       0.15   12.0   5.3       0.41   10.5   5.3    1.7  1  zf-RING_6     zf-RING of BARD1-type protein
       0.18    9.9   0.0       0.26    9.3   0.0    1.1  1  Patched       Patched family
       0.68    9.8   6.6        1.7    8.5   6.6    1.6  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.2   0.0   2.1e-70   2.2e-67       1     350 []     417     808 ..     417     808 .. 0.83

  Alignments for each domain:
  == domain 1  score: 227.2 bits;  conditional E-value: 2.1e-70
                 HHHHHHHHH............................................................HHHHHTT--EEE--..-TTS--HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkReqnlqdleaalrkllk.....................tldgekiyvnpatgevveesaeakqsvrGGiLaD..emGLGKTvqvlali 76 
                 yQk+a+ wm    ++ ++  a +r+ ++                     t d  + y+n+++ge++   ++++++ rGGiLa     G+GKT+++ ali
  CDO73050.1 417 YQKQALSWM----HSIETGAASAREAQSmhplwkeytfpfdpndetidlTADEHPFYFNEYSGELSLDFPKTERKCRGGILARlwALGMGKTIMLSALI 511
                 9********....444444445555555556666999999******************************************84467899********* PP

                 H.....................HHTTTS---..............S-............EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---- CS
                 xxxx..................xxxxxxxxx.......xxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  77 laqr..................akeekdkek.......krkdtlagp............tLivvPaslldqWeneierhvsssalrvlvyggqkkmkkk 138
                  +                            k               p            tLiv+P+sll+qW +e++r  ++++l+vlv++gq++ +  
  CDO73050.1 512 QTALgpetpaevdpgasskrrqL-------KlnnafraA-------PkrpsrpqkgpseTLIVAPTSLLNQWSEELQRSSKPGTLKVLVWHGQNRLDLD 596
                 *8778888877777654433330.......222333330.......1444444444456*********************************9976666 PP

                 -------------EEEE-HHHHHHHT.......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 139 ntkvapklladydvvittYdvlsreaelq.kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfg 236
                    ++    ++ dv+it+Y +l +e++    ++s++ +vew rv+lDE+h +k+ tsk a+av +L +++rw +tGTPi n ledly+LlkfL   p++
  CDO73050.1 597 -AAIDGSEGNAIDVIITSYGTLVSEHAKHeRQPSPIFEVEWMRVILDEAHHIKSRTSKSAKAVYTLHARRRWAVTGTPIVNRLEDLYSLLKFLDFTPWS 694
                 .888999999***********98776544499******************************************************************* PP

                 -HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT....--..S---EEEEEEEEE--HHHHHHHH....................HHHHHH-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 237 ekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdv....ek..nlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssks 329
                 ++++f++ ++ p+ a ++k ++    +l++++lrr k+ +    +k  +lP k++ +  l++s+ er++Y  l +++ k++     ++  ++ +     
  CDO73050.1 695 NYTFFRSFITLPFLARDRKAVEVVQIILESVLLRREKNMLdsdgKKivELPSKEVIVETLEFSPLERRIYDSLYSDAKKDFEHL-NSKGLVSRNY---- 788
                 ****************************************887633567**********************6666666665443.3333333333.... PP

                 HH-HHHHHHHHHHHHH---XX CS
                 xxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 330 kekilelllelrqacnhpqlv 350
                  ++il +l++lr+a+ hp+lv
  CDO73050.1 789 -THILAMLMRLRRAVLHPNLV 808
                 .66**************9986 PP

>> HIRAN  HIRAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   2.5e-20   2.6e-17       8      95 ..     161     281 ..     153     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.5e-20
                 EECGGGCCT..---TTEEEEEEE-T...................................T-SS-TT-EEEEETTS-EEEEE-HHHHHHHHHHHHTTSS CS
       HIRAN   8 vvglsyysgtgylkpgtevilerep...................................nnpadanavrvlnergfeiGrlprevakwlspLldsgfi 71 
                 ++++   +g+gy+kpg+e+++er+                                    ++++++  vr +n rgfe+Grlp++va w+s+Lld  ++
  CDO73050.1 161 AWSTV--KGSGYIKPGEEIYIERDDsskplpphskkptktkggkkqltiasmlkpappksSKKKQDSVVRLTNSRGFEFGRLPQDVASWVSRLLDLDIV 257
                 78888..******************************************************************************************** PP

                 EE.EEEESS-TTTEEEEEEEEEEEG CS
       HIRAN  72 tf.egvvvdapeknlkvgltvylsl 95 
                 +f + +vvd+pe +l +g ++++sl
  CDO73050.1 258 EFkKCTVVDCPE-RLVTGADLIVSL 281
                 **8889******.*********997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.3e-17   1.3e-14      11     111 .]     967    1070 ..     954    1070 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.3e-17
                  HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHH CS
  Helicase_C   11 kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqri 104 
                    +    ++++f+++++ l+ ++++le++g+   +++g++  ++r+e+++ f+  + e + ++i+ ++++ G++++++n+V ++d+++n ++ +q+i
  CDO73050.1  967 RDQDPCFRAVVFSQFTSFLDLIQVVLEREGLAWYRFDGSMDVKKRNEAVSGFKtpSREAKvMIISLKAGGVGLNLTNANHVYMMDCWWNAATENQAI 1063
                  455566689********998899999***************************8878888899********************************** PP

                  TTSSSTT CS
  Helicase_C  105 GRtgRag 111 
                  +R++R+g
  CDO73050.1 1064 DRVHRIG 1070
                  *****97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   4.6e-09   4.9e-06      32     169 ..     498     673 ..     412     675 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 4.6e-09
                 STTSTHHHHHHHHHHHH-S.......................................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  32 aTGtGKTlvaaklierllkkgkee..................................kflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 a G+GKT+++ +li+  l  +                                     ++l+++p+ sll+q+ ee+++ +++ +  +  +++g+++  
  CDO73050.1 498 ALGMGKTIMLSALIQTALGPETPAevdpgasskrrqlklnnafraapkrpsrpqkgpsETLIVAPT-SLLNQWSEELQRSSKPGTL-KVLVWHGQNRLD 594
                 679999999977777776643333589999999999999999999999999999999899999996.899**********999987.556677776666 PP

                 ............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 .....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                        ++ + +++++t++ +l ++  ++e++     + +   +i DEaH++++   ks + ++  + +  + ++T+Tp
  CDO73050.1 595 ldaaiDGSEGNAIDVIITSYGTLVSEHAKHERQPSPIFEVEWMRVILDEAHHIKSRtsKSAK-AVYTLHARRRWAVTGTP 673
                 77777899999****************8888888888888888***********98533444.45555778888888888 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0  13.8   2.7e-09   2.9e-06       1      41 []     864     908 ..     864     908 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.7e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC....TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks....rkkvkCPlC 41 
                 CpiC++++++p  l  C+H++C++Ci+  ++s     +  kCP+C
  CDO73050.1 864 CPICFDVMETPAILPGCMHQCCKDCIVAFIEScrekGEDGKCPTC 908
                 ************9999****************987666667**** PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.7e-09   9.2e-06      24     139 ..     500     652 ..     493     673 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8.7e-09
                 TSSHHHHHHHHHHHHHHHSTTSTS...................................-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  24 GsGKTlaflipvlqivyetkgktg...................................pkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa 87 
                 G+GKT + +  +  ++      ++                                     +liv+Pt  L +q  ++l+++ k+ +l+vl++ g +++
  CDO73050.1 500 GMGKTIMLSALIQTAL-G---PETpaevdpgasskrrqlklnnafraapkrpsrpqkgpSETLIVAPTS-LLNQWSEELQRSSKPGTLKVLVWHG-QNR 592
                 8899988655544444.2...2222334444555555666666666666666666666699******95.889***********98899997766.555 PP

                 HHHHHHHH..TT..CSEEEEEHHHHHH.HH..HCTSSHCTTEEE..EEEETHHHHHHTTTH CS
                 xxxxxxxx..xx..xxxxxxxxxxxxx.xx..xxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
        DEAD  88 rdqlskld..ng..vdivvgtpgrldd.ll..stgklnlsqvrf..lVlDEadrlldqgfs 139
                  d  +++d  +g  +d++++  g l++ +   +++   + +v++  ++lDEa+ + +   s
  CDO73050.1 593 LDLDAAIDgsEGnaIDVIITSYGTLVSeHAkhERQPSPIFEVEWmrVILDEAHHIKSR-TS 652
                 57777775442256*************66665444555889988789********998.33 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6  14.2   2.9e-07    0.0003       1      40 []     863     908 ..     863     908 .. 0.79
   2 ?   -0.9   0.0       1.5   1.6e+03      15      30 ..    1041    1056 ..    1038    1061 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.9e-07
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLee.....kn.eCPlC 40 
                 +CpiC+d++++p  +  C H+ C++Ci   +e+     ++ +CP+C
  CDO73050.1 863 ECPICFDVMETPAILPGCMHQCCKDCIVAFIEScrekgEDgKCPTC 908
                 6***********9999**********9876543222222369***9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
  zf-C3HC4_2   15 vtpCgHvfCqkCilrs 30  
                  +t+ +Hv+  +C+  +
  CDO73050.1 1041 LTNANHVYMMDCWWNA 1056
                  56679*******9876 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4  11.0   1.6e-07   0.00017       2      44 ..     861     909 ..     860     915 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.6e-07
                 GSB-TTTSSSBS-EEETT.EEEEEE-HHHHHHHHH......TT-B-TTT- CS
  zf-C3HC4_3   2 deeCviClerprnvvllp.CgHlvlCeeCaekllk......rkkkCpiCr 44 
                 + eC+iC++  ++ ++lp C+H+ +C++C   + +      ++ kCp C 
  CDO73050.1 861 NAECPICFDVMETPAILPgCMHQ-CCKDCIVAFIEscrekgEDGKCPTCL 909
                 679*******999999998****.*****9999888989999*******5 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9  10.7   2.5e-07   0.00026       1      39 []     864     906 ..     864     906 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.5e-07
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreCl.w..elskslegafkCP 39 
                   CpIC++++++P ++++C H  C++C+    e+ + ++   kCP
    CDO73050.1 864 CPICFDVMETPaILPGCMHQCCKDCIvAfiESCREKGEDGKCP 906
                   ***********54458**********73667888888999998 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  12.9   1.9e-06     0.002       2      43 ..     863     908 ..     862     909 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst......CPlC 43 
                 eCpIC++ ++++  ++   C H ++++C+  +++s+++      CP+C
  CDO73050.1 863 ECPICFDVMETPAILP--GCMHQCCKDCIVAFIESCREkgedgkCPTC 908
                 8*****9997655555..6**********998888877888******* PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   7.6   8.9e-06    0.0094       3      49 ..     862     910 ..     860     911 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.9e-06
                 SB-TTTSSB-SSEEEETT--SS--EEH.HHHHHHHHHS--.-B-TTT-- CS
      zf-MIZ   3 lkCplslsrikiPvrgekCkHlqCfdl.esylelnertet.WnCPvCsk 49 
                  +Cp+ ++ +++P+    C H+ C d+  +++e+++++ +  +CP C k
  CDO73050.1 862 AECPICFDVMETPAILPGCMHQCCKDCiVAFIESCREKGEdGKCPTCLK 910
                 68************************8468****98877669*****75 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2  14.1   1.7e-05     0.018       1      42 []     864     908 ..     864     908 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
  zf-C3HC4_4   1 CPiCldYLekPvsle.CGhsfClsCisslqke..pdgeqllCplC 42 
                 CPiC d +e P+ l+ C h++C  Ci ++ ++  ++ge+  Cp C
  CDO73050.1 864 CPICFDVMETPAILPgCMHQCCKDCIVAFIEScrEKGEDGKCPTC 908
                 **************77**********99866511556679****9 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.1e-05     0.065     121     166 ..     606     654 ..     602     661 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-05
                 CTSEEEEEHHHHTSCCCHHHHH...T..GCGCEEEECTCCCHHHHHHHC CS
      DEAD_2 121 dadiiilpYqyLldekireslk...gislknsivilDEAhNiedvceea 166
                 + d+ii +Y  L++e+++++ +    ++++   vilDEAh i++   ++
  CDO73050.1 606 AIDVIITSYGTLVSEHAKHERQpspIFEVEWMRVILDEAHHIKSRTSKS 654
                 679************999988888888999999*********9876655 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  12.5   8.8e-05     0.093       1      42 [.     863     908 ..     863     910 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-05
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll......ekeavCpiC 42 
                 +C++Cf+ +  e +++l  C H +C++C+          +++ +Cp+C
  CDO73050.1 863 ECPICFDVM--ETPAILPGCMHQCCKDCIVAFIescrekGEDGKCPTC 908
                 6********..*******************99999***9********* PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.3   0.00039      0.41       8      39 ..     862     893 ..     854     914 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00039
   zf-RING_6   8 lrcsrctdilrepvclggcehifcsncisdcf 39 
                   c  c d++  p  l gc h  c +ci   +
  CDO73050.1 862 AECPICFDVMETPAILPGCMHQCCKDCIVAFI 893
                 57999**********************97544 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00025      0.26     607     656 ..     943     992 ..     930     994 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
     Patched 607 ftlalkdlseptdrtkllkelRsiadkeselnvtvfdedaafadqlltil 656
                 +tl  +d++  t+ + l++ lR   d+++ + ++vf + + f+d+++++l
  CDO73050.1 943 VTLRKNDFRSSTKLEALVQDLRRLRDQDPCFRAVVFSQFTSFLDLIQVVL 992
                 67778899999***********************************9986 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.6    0.0016       1.7      11      56 ..     861     908 ..     855     909 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0016
                 XSB-TTTSSB-SSEEEESSS--EEEHHHHHHHC....TTTS-EE-SCCC- CS
      zf-Nse  11 slkCPltlqpfeePvtskkCpHvFEreaIleli....krkktvkCPvagC 56 
                 + +CP+ +  +e+P +   C H   ++ I+++i    ++ +  kCP   C
  CDO73050.1 861 NAECPICFDVMETPAILPGCMHQCCKDCIVAFIescrEKGEDGKCPT--C 908
                 679******************************99987788899998..5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 7318.88
//
Query:       CDO73051.1  [L=268]
Description: hypothetical protein BN946_scf185007.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-07   30.8   5.8    3.3e-07   30.3   5.8    1.2  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   5.8   1.8e-11   3.3e-07       1      36 [.      83     118 ..      83     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.8e-11
                 SS-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkkln..leCtfyses 36 
                 +aC+ C+ +K++C+++ P C++C k++    C  y+++
  CDO73051.1  83 RACIACHAGKTRCSENLP-CQSCLKRGigNSCA-YPDP 118
                 69****************.********999999.8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1808.51
//
Query:       CDO73052.1  [L=270]
Description: hypothetical protein BN946_scf185007.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-06   27.5   0.0      5e-06   26.4   0.0    1.6  1  HLH              Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
        2.3    6.8   6.6        2.6    6.6   6.6    1.1  1  Ndc1_Nup         Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   5.6e-10     5e-06       1      52 [.     179     249 ..     179     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 5.6e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST....................CSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP....................slppskKlsKaeiLekAveYIkhL 52 
                 +r +h + E++RR+ i++++ +L +ll                     s++++    K+ iL +A eYI+ L
  CDO73052.1 179 KRLNHIMSEQKRRNAIRDGYLQLTTLLApagappgsgmptrgrpkgsgSRGRG-TKGKSGILFRAREYIRWL 249
                 799***********************999**********99999876544444.4469***********966 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.6   0.00029       2.6     393     457 ..     107     180 ..      72     243 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00029
    Ndc1_Nup 393 fgnsltaeaspkssssskegvekalsslakspgqs.......psptarlsprarkllekaksrlls..keqkea 457
                 f+++++++++p++ +s++++ + +  + +++p ++        sp++++sp++r++   ++sr+++  ++ +++
  CDO73052.1 107 FHAQQDSRRQPQQHYSQPSQQAPQSPPSTQQPDTKplipitsRSPSSSASPSSRETPGANASRVKQplSTPQKR 180
                 22222222222222222222222222222222222222222222333333333333333333333311111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1963.65
//
Query:       CDO73053.1  [L=518]
Description: Laccase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-46  157.4   0.2    9.9e-45  152.5   0.0    2.9  3  Cu-oxidase    Multicopper oxidase
    1.3e-40  138.3   4.7    1.1e-35  122.4   0.1    3.7  3  Cu-oxidase_2  Multicopper oxidase
    2.1e-37  127.8   0.3    8.2e-36  122.6   0.2    2.6  2  Cu-oxidase_3  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.27   1.6e+03     103     136 ..      97     132 ..      28     143 .. 0.72
   2 !  152.5   0.0   1.7e-48   9.9e-45       2     159 .]     164     305 ..     163     305 .. 0.92
   3 ?    1.0   0.0     0.069   4.2e+02      83     104 ..     416     437 ..     408     482 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.27
                 S..EEEESCEEE-TTEEEEEEEEE...-SSSEEEEEEEE CS
  Cu-oxidase 103 e..pvevdsldIavGqrysvlvta...nqapgnYwivas 136
                    p+ v++  Ia+G +  +l+++   +q  g++w++ +
  CDO73053.1  97 AdgPAFVNQCPIASGHS--FLYDFqvpDQ-AGTFWYHSH 132
                 44566666666777764..4444422233.788888874 PP

  == domain 2  score: 152.5 bits;  conditional E-value: 1.7e-48
                 EEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCE CS
  Cu-oxidase   2 eyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgv 100
                 ++vitl+Dwyh +ak            ++++p  +d++ling g+  +     ++++la+++v++gk+yr+r++++s+d++++fsI++H++t++e+D  
  CDO73053.1 164 DTVITLADWYHVAAKL-----------GPRFPFGSDSTLINGLGRTTGI----APSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSI 247
                 79*********77777...........788999*********9997744....3689****************************************** PP

                 TTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEE.GSSSCHHHHTTSEEEEEEEESTT CS
  Cu-oxidase 101 yvepvevdsldIavGqrysvlvtanqapgnYwivas.grsnlieafengtaaailrysea 159
                 +++p+evds++I+++qrys++++a+q+++nYwi+a+ + ++ +  f  g+++ailry++a
  CDO73053.1 248 NTQPLEVDSIQIFAAQRYSFVLDASQPVDNYWIRANpA-FG-NTGFAGGINSAILRYDGA 305
                 ************************************62.44.46699**********986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.069
                 EEEEETSB-EEEEEETCETTSE CS
  Cu-oxidase  83 lnfsIeGHkltVvevDgvyvep 104
                 ++f ++GH + Vv + g+ v +
  CDO73053.1 416 HPFHLHGHAFAVVRSAGSSVYN 437
                 7899*********998887754 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   1.9   0.00018       1.1      46     134 ..      72     148 ..      26     151 .. 0.72
   2 !    4.8   0.0    0.0036        22      29      95 ..     203     259 ..     184     281 .. 0.78
   3 !  122.4   0.1   1.8e-39   1.1e-35       2     135 ..     366     490 ..     365     492 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00018
                   EEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S-EEEEEEESSHHHHHTT-EEEEEEE CS
  Cu-oxidase_2  46 viqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfka.dnpGvwllHCHilwHldqGmalqfvvr 134
                    ++n+t+l + ++H+HG+  q    g++            + p   +   + +g  + + f++ d++G + +H+H+      G+ + fvv 
    CDO73053.1  72 QLTNHTMLkTSSIHWHGFFQQ----GTNW----------ADGPAFVNQCPIASGHSFLYDFQVpDQAGTFWYHSHLSTQYCDGLRGPFVVY 148
                   356677778999*****9333....3333..........2445667788899999******9989***********988888888888876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0036
                   TTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE CS
  Cu-oxidase_2  29 sentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqv 95 
                   + +  vi++ +g++ ++ +   +   +H+f ++ h++ +++ ++ n           ++p + d +q+
    CDO73053.1 203 PSDLAVIKVTQGKRYRFRLVSLSCDpNHTFSIDNHTMTIIEADSIN-----------TQPLEVDSIQI 259
                   567889***************999989*************888877...........44555555555 PP

  == domain 3  score: 122.4 bits;  conditional E-value: 1.8e-39
                   XS-SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS...-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE CS
  Cu-oxidase_2   2 vppklptllqltsgneeaseitngeefsentnvitlpkgevveiviqnntkl...pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqv 95 
                   vpp++p+llq+ sg++ a+      ++ ++ +v++lp ++ +ei + ++++    pHPfHlHGh f+v+ r++g+      + yn++np+ rd+v++
    CDO73053.1 366 VPPSVPVLLQILSGAQAAQ------DLVPEGSVFVLPSNSSIEISFPATANApgfPHPFHLHGHAFAVV-RSAGS------SVYNYDNPIFRDVVST 449
                   89**********9988766......6777*******************99998899*************.66666......6*************** PP

                   -T.TEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2  96 pp.ggwvairfkadnpGvwllHCHilwHldqGmalqfvvrp 135
                      g++v+irf+++npG+w+lHCHi++Hld+G+a+++++++
    CDO73053.1 450 GQpGDNVTIRFETNNPGPWFLHCHIDFHLDAGFAVVMAEDT 490
                   655**********************************9986 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.2   1.4e-39   8.2e-36       3     118 ..      32     151 ..      30     152 .. 0.91
   2 ?    2.1   0.0     0.031   1.8e+02      76     109 ..     451     483 ..     447     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 1.4e-39
                   EEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B.....-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEE CS
  Cu-oxidase_3   3 tektvsplggterevitvNgqfpgptievregdtvvvnvtNkldent.....sihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtl 94 
                   t+++vsp+g   re+++vNg  p+p i+ ++gd+ ++nv+ +l+++t     sihwhG+ q++t+w+DG+++v qcpi++g+sf y f+v +qagt+
    CDO73053.1  32 TNAQVSPDGFA-REAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTmlktsSIHWHGFFQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTF 127
                   78899999988.**************************988885543233338******************************************** PP

                   EEEE--TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  95 wYhshlslqqaaGlaGaiiiedke 118
                   wYhshls+q+ +Gl G+++++d++
    CDO73053.1 128 WYHSHLSTQYCDGLRGPFVVYDPN 151
                   *********************997 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.031
                   -TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-E CS
  Cu-oxidase_3  76 qpgesftyrftvkqqagtlwYhshlslqqaaGla 109
                   qpg+++t rf+ ++  g  + h h++++  aG a
    CDO73053.1 451 QPGDNVTIRFETNN-PGPWFLHCHIDFHLDAGFA 483
                   7999*******999.9999999999998666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3732.15
//
Query:       CDO73054.1  [L=757]
Description: Glycoside Hydrolase Family 3 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-45  153.4   0.0    1.1e-44  152.8   0.0    1.3  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    1.5e-29  103.4   0.0    2.7e-29  102.6   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    4.5e-07   29.9   0.0    9.4e-07   28.9   0.0    1.5  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   1.9e-48   1.1e-44       1     203 [.     371     596 ..     371     597 .. 0.88

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 1.9e-48
                      -EEEEEGSS--S-S-STEEEEEESGGGS.SS-SS-BSSS----S---HHHHHHHHHHH................-HHHHHHHHHHHTSEEEEEE CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad.etlklGggsgtvtvsylvsplegirerles..............eegideaveaakeaDvavvvv 79 
                      iVLLkN+ ++LPL+k++kk+a+iGp a+ +tl++G++ g    +yl+spl g +++  +              ++g+ +a +aak+aD+++++ 
       CDO73054.1 371 IVLLKND-GVLPLAKHIKKLALIGPWANaTTLMQGNYFGV--APYLISPLLGAQQAGFDveyvlgtnvttrndTSGFPAAIAAAKRADAVIFAG 461
                      8******.*****************999778899999996..458********9999779*************99******************* PP

                      EES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EES CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  80 gedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpk 172
                      g d+++e+E+ Dr ++++p++q el++++  ++k+ vv    gg+++ +   ++++v+Ai++  +pGq+gGta+ d+L+G+v P+G+Lp+t + 
       CDO73054.1 462 GLDETVEREEIDRLNVTWPGNQLELVAELERVGKPLVVAQFGGGQLDDSALkSSPAVNAIIWGGYPGQSGGTALFDILTGNVAPAGRLPITQYP 555
                      **********************************************876668889*************************************99 PP

                      SSG..GG..................S.-----SETTTT-BC CS
                      xxx..xxxx.xxxxxx......xxxx.xxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 173 sle..dlpd.dyyeek......dtyk.fegtplYpeGlgls 203
                           ++p  d + +       +tyk ++gtp+Y++G+gl 
       CDO73054.1 556 AIYadQVPMtDMTLRPsasnpgRTYKwYTGTPVYEFGFGLH 596
                      654223343322222233323355***************96 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   4.5e-33   2.7e-29      92     315 ..      91     327 ..      89     329 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 4.5e-33
                    HHHHHHT-HHHHHHHHHHHHHHHHHH......T--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT.......T-EEEEEEETT CS
  Glyco_hydro_3  92 lalaatssldlikelgriiakelral......gididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga.......gvaatvKHFpg 174
                    + ++a+++  li+++++ii  e ra       g+d  + P ++  +dpr+g+g+++ +edp+  ++++ + + Glqg        +v+a  KHF++
     CDO73054.1  91 ILMGAAFDDALIQQVASIISTEGRAFnnaghaGLD-YWTPNINPFKDPRWGRGQETPGEDPFHLSQYVYNLIVGLQGGldpkpyfKVVADCKHFAA 185
                    6899*****************99986222211444.38********************************************************** PP

                    GTT-SSETTTSEEB--.--HHHHHHTTHHHHHHHH.HTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS--..-SEEEES-TTSHHHHCCS- CS
  Glyco_hydro_3 175 hGdgavdshkelptvd.hseeelrevdlvpfqaai.eagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGF..dGvvvsDalamkeiadrgg 266
                    +   + ++++ +      ++++l e +lvpfq+ + +a+v sVM +   ++a++g p  +++ ll+++LR+ +GF  d  v sD  a+++i   ++
     CDO73054.1 186 YDMDNWEGNVRYGFNAiVTQQDLSEFYLVPFQTCVrDAKVASVMCS---YNAVNGIPSCANSFLLQNILRDYWGFaeDRWVTSDCDAVQNIYSPHN 278
                    *8888888866554431399**************************...**************************77889*************999 PP

                    ....HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHH CS
  Glyco_hydro_3 267 ....keeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrr 315
                        +++a++ aL AG+Di     +      +l +a++ G +    + ++++r
     CDO73054.1 279 ytndPAQAAADALLAGTDIDCGTFSS----TYLPDALQRGLVHVTDLRRAATR 327
                    9999999************9766666....58888888888888888777766 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.6e-10   9.4e-07       2      67 ..     665     730 ..     664     733 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.6e-10
                 EEEEEEEESS-STTSBS-EEEEEEEEE.E-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEE CS
    Fn3-like   2 vvqlYvsdpessverpvkeLkgFekve.LapGesktvtftldrkdlsvwdeekqkwvvepGeytvlv 67 
                 v+ l+vs   +  ++p+k+L+ +++v+ Lap +s+ ++++++  + +  d+  ++w+  pG+yt+  
  CDO73054.1 665 VALLFVSGSFGPSPHPNKQLVSYTRVHgLAPRKSAIAKLPVTLGAIARADQSGDQWI-YPGTYTIAL 730
                 789999999999****************************************99985.689999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 5288.72
//
Query:       CDO73055.1  [L=275]
Description: hypothetical protein BN946_scf185007.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-35  122.5   0.0    4.2e-25   88.8   0.0    2.4  2  BSP        Peptidase of plants and bacteria
  ------ inclusion threshold ------
      0.072   13.0   0.1       0.12   12.3   0.1    1.3  1  SprT-like  SprT-like family


Domain annotation for each model (and alignments):
>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   4.7e-29   4.2e-25       2     128 ..      16     176 ..      15     177 .. 0.93
   2 !   31.1   0.0   2.1e-11   1.9e-07     161     207 .]     221     266 ..     213     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 4.7e-29
         BSP   2 pkvrleindldtpggkrFlrlvpdaesvlsdasrkvlklLykspser........................................ippvrsVtlllr 60 
                 p++++ i+dl +pg+k Fl+ v   + +l+da+  + ++L +  +++                                           v+ + l+lr
  CDO73055.1  16 PTFHFYIEDLAHPGAKLFLDYV-RPDVALRDAV--ITRFLHQAYEKHpigtaetaavhavivhdslavlsvtpwplltlrdgpprrlCYSVKCISLVLR 111
                 899*******************.7888899986..778888876555688899*******************************9999999******** PP

         BSP  61 didgvaytsGldddhkeIhlslsyiekasaekdakaevtgvLthelvhvyqweaegrapggliEGiAd 128
                  + gva t G ++ hkeIh+sl+++++++  ++a++e+ gvLthe+vh+yq+++ g+apggliEGiAd
  CDO73055.1 112 PMPGVAHTFG-SPTHKEIHFSLDHVRNSA--SRAREEILGVLTHEMVHCYQYNGLGKAPGGLIEGIAD 176
                 **********.****************77..6899********************************9 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 2.1e-11
         BSP 161 FLeyledrvsegfvrklNdkllrvkyssdaffkellGkdveeLweeY 207
                 F +++e+r+++g +r+lN ++++++y ++++fk+++G+++++Lw+ Y
  CDO73055.1 221 FXDWIEKRYGNGSIRDLNGAMKDKEY-DEHVFKDVTGRKISKLWKLY 266
                 89*******************99999.*****************977 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.3e-05      0.12      45      78 ..     124     160 ..      98     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
   SprT-like  45 hhasIeLsekllds...rsedrllntLaHElcHlalf 78 
                 +h++I +s   +++   r ++++l +L HE++H + +
  CDO73055.1 124 THKEIHFSLDHVRNsasRAREEILGVLTHEMVHCYQY 160
                 56667776655544445889*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1982.04
//
Query:       CDO73056.1  [L=596]
Description: hypothetical protein BN946_scf185007.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-06   26.3   0.2     0.0091   15.8   0.0    2.7  3  NIF        NLI interacting factor-like phosphatase
     0.0003   20.7   0.0      0.002   18.0   0.0    2.0  2  PTCB-BRCT  twin BRCT domain
     0.0014   19.0   0.0      0.003   17.9   0.0    1.5  1  BRCT       BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
        2.7    8.1  11.7       0.21   11.7   1.7    2.4  2  KCT2       Keratinocyte-associated gene product


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00075       3.3       2      20 ..      51      70 ..      50      96 .. 0.74
   2 !   15.8   0.0     2e-06    0.0091      90     142 ..     190     247 ..     177     252 .. 0.73
   3 ?   -1.9   0.3      0.57   2.6e+03     133     155 ..     298     321 ..     295     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00075
         NIF  2 tLVLDLDetLvhskleks.k 20
                 L++DLD+t+vh++++++ +
  CDO73056.1 51 SLIVDLDQTIVHATVDPTvG 70
                69***********9866544 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2e-06
         NIF  90 kgeyvKdLsllgr.dlsrvvivDdspdsfelqpengipiksf...fs..dkkDneLlkl 142
                 +g + K+L+ l   d+s vvi+Dd++d++e +p n++++ ++   ++  d +   L kl
  CDO73056.1 190 RGLTQKSLQRLFPcDQSMVVIIDDRADVWEWSP-NLVKVVPYdffVGigDINSAFLPKL 247
                 56788999999888****************965.8888888765323325555555455 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.57
         NIF 133 dkkDneLlkllpllkelakv.ddv 155
                 d++D+eL+ l p  ++la++ +d 
  CDO73056.1 298 DDEDEELEALVPSSDALAQSeEDA 321
                 789************999765776 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.32   1.4e+03       6      24 ..       7      25 ..       5      30 .. 0.84
   2 !   18.0   0.0   4.4e-07     0.002      12      43 ..     502     533 ..     497     538 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.32
                ECB-TTCHHHHHHHHHHTT CS
   PTCB-BRCT  6 tgysgddrkslqklieamG 24
                tg+s+++r s+q++  a+G
  CDO73056.1  7 TGFSDTARASIQMTHLANG 25
                8999999999999888887 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 4.4e-07
                 CHHHHHHHHHHTT-EEESSEETT-SEEEECSS CS
   PTCB-BRCT  12 drkslqklieamGaeyskdltksvTHLicksg 43 
                 + ++++++ +a+Ga++ ++lt +vTH+++++ 
  CDO73056.1 502 EATEIWRTAHAFGAKCYTELTPRVTHVVAAKL 533
                 578899**********************9875 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.7e-07     0.003       6      55 ..     484     535 ..     480     550 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.7e-07
                 TTTEEEEEEESTSSHHHHHH...HHHHHHTTCEEESSCSTTSSEEEESSSHSH CS
        BRCT   6 fhgckfvitgvldnftrdel...eelikehGGkvttevskktthlvvgepesr 55 
                 ++gc++ + +v    tr+e+    +++  +G+k+ te+++++th+v+ +  sr
  CDO73056.1 484 LEGCHILFSSVIPLDTRPEAteiWRTAHAFGAKCYTELTPRVTHVVAAKL-SR 535
                 89******999999999999888889********************9998.44 PP

>> KCT2  Keratinocyte-associated gene product
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.8     0.081   3.7e+02      15      58 ..     268     311 ..     256     356 .. 0.68
   2 ?   11.7   1.7   4.6e-05      0.21      23      91 ..     521     589 ..     501     595 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.081
        KCT2  15 aekssaasaasrvsaassvseeeadasedtsleeedlltlnssp 58 
                 a    ++s + + +   +  +e++d+++d++ e+e+l +l  s 
  CDO73056.1 268 AAAAVVTSEPGEIALEDAGEDEDVDDDDDEDDEDEELEALVPSS 311
                 23333333333444455667889999999999999997665443 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.6e-05
        KCT2  23 aasrvsaassvseeeadasedtsleeedlltlnsspsvikdtldn.GdyGepdydlttssrdeesdeise 91 
                  ++rv+   +++   a a  d++ ++e++    s  s+++ + ++ GdyGe dy+ +    d+e d  ++
  CDO73056.1 521 LTPRVTHVVAAKLSRAAAATDNDDDDENIAGRSSRSSPVNGSAEEaGDYGE-DYEGSDDDMDDEDDFLAR 589
                 5566665555555667777777778899988877777777766666*****.***999999988876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 3741.03
//
Query:       CDO73057.1  [L=288]
Description: hypothetical protein BN946_scf185007.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-47  159.6   0.1    7.8e-47  159.3   0.1    1.1  1  adh_short       short chain dehydrogenase
    1.5e-31  109.8   0.0    1.9e-31  109.4   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    5.9e-06   25.9   0.0    0.00017   21.1   0.0    2.3  2  DUF1776         Fungal family of unknown function (DUF1776)
    9.4e-05   22.4   0.2    0.00026   21.0   0.2    1.7  1  KR              KR domain
    0.00026   20.5   0.2    0.00043   19.8   0.2    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00041   20.3   0.1    0.00065   19.6   0.1    1.3  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.17   11.7   0.0    1.2  1  DFP             DNA / pantothenate metabolism flavoprotein
       0.16   12.0   0.1       0.28   11.2   0.1    1.4  1  Proho_convert   Prohormone convertase enzyme
        0.2   10.7   0.0       0.38    9.8   0.0    1.4  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.1   3.9e-50   7.8e-47       2     190 ..       7     193 ..       6     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 3.9e-50
                 EEEEESTTS.HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S...S--SSGGGC CS
   adh_short   2 vvlvtGass.GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi...tgsgpfsel 96 
                 vvl+tG+s+ GIG a+++e+a++G  v++++r+ ++++    +      +++++++Dvt+ ++v+++v++++++ g++dvLvnNAG+     +g++ ++
  CDO73057.1   7 VVLITGCSKgGIGFALCEEFASRGSIVYATARRLDAMHGFSHK------NIHPLALDVTSDDSVQNAVQAVIDREGQIDVLVNNAGLggtGDPGAVIDV 99 
                 8******9737*********************99988333322......49************************************998888999*** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                   +++ r++++N+ +++ +++av+p+m +++sG+Ivnv+S+ag+ pv+++  Y+A+Kaa+++lt++l +e +p +i v+ +aPG+v++++++++
  CDO73057.1 100 PMDDIIRMFDTNVYAAIRTAKAVIPHMAARKSGTIVNVGSIAGEIPVPWGGIYGATKAALHSLTDTLYMECKPLRIHVVLLAPGGVKSNIVANQ 193
                 ****************************************************************************************999876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   9.8e-35   1.9e-31       4     181 ..      16     192 ..      12     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 9.8e-35
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGGH-HHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk.lkgpfletsreefdr 97 
                    gIG+a+ +++a++G  v +t ++ +a   ++ +  +   ++  l++DVt++++v+++v++v ++ g++D+lvnnag   +   g +++++ +++ r
    CDO73057.1  16 GGIGFALCEEFASRGSIVYATARRLDA---MHGFSHK---NIhpLALDVTSDDSVQNAVQAVIDREGQIDVLVNNAGLGGTgDPGAVIDVPMDDIIR 106
                   69**************99999888777...5555543...3345*************************************999************* PP

                   HHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181
                   ++d+n+y+++++aka++p+m+++  g ivn+ s+++e+ vp   +yga+Kaal++lt +l +e+ p +i v   +pg +k +++++
    CDO73057.1 107 MFDTNVYAAIRTAKAVIPHMAARksGTIVNVGSIAGEIPVPWGGIYGATKAALHSLTDTLYMECKPLRIHVVLLAPGGVKSNIVAN 192
                   ******************7776658*******************************************************998543 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.033        65       4      69 ..       6      69 ..       3      85 .. 0.80
   2 !   21.1   0.0   8.4e-08   0.00017     106     198 ..      94     183 ..      92     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.033
     DUF1776  4 dvvlvlGsptePltRsialDLerrGFiVfvtvesaeeeklvesedredIrplsvdd.dpssieasle 69
                 vvl+ G  +  +  ++  ++  rG iV+ t++  +  +  +++   +I+pl +d  +++s++++++
  CDO73057.1  6 TVVLITGCSKGGIGFALCEEFASRGSIVYATARRLDAMHGFSHK---NIHPLALDVtSDDSVQNAVQ 69
                6899999999999999999**************99977777776...68888887766666666655 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 8.4e-08
     DUF1776 106 gpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLG 198
                 g +  +p++ +   + +++ + i t +a +p++++   +k+ +iv   si  ++ +p  ++   +  al++l+ +L  e++p+ i+v+ +  G
  CDO73057.1  94 GAVIDVPMDDIIRMFDTNVYAAIRTAKAVIPHMAA---RKSGTIVNVGSIAGEIPVPWGGIYGATKAALHSLTDTLYMECKPLRIHVVLLAPG 183
                 567789999999**********************9...89***********************************************977655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.3e-07   0.00026       2     161 ..       7     164 ..       6     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
                 EEEEETTT.SHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------...-- CS
          KR   2 tylitGGl.GgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr...dk 95 
                 ++litG+  Gg+G +l++  a++g   +  ++R+          +++++     +++ +a+Dv++ d+v+++++++ ++e++i   ++ Ag+      +
  CDO73057.1   7 VVLITGCSkGGIGFALCEEFASRGS-IVYATARR----------LDAMHGFsHKNIHPLALDVTSDDSVQNAVQAVIDREGQIDVLVNNAGLGGtgdPG 94 
                 6799997548999999999999985.34455555..........44444432569***********************************876522167 PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalae 161
                 ++ ++ ++d+ +++   v +a    +++ +    ++   +v + Siag +  +  + Y a+ a l++l +
  CDO73057.1  95 AVIDVPMDDIIRMFDTNVYAAIRTAKAVIPhmaaRKSGTIVNVGSIAGEIPVPWGGIYGATKAALHSLTD 164
                 99999*****99999999988777776655566699999*********9999999999999999998865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   2.2e-07   0.00043       1      78 [.       8      91 ..       8     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.2e-07
                EEEETT.TSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HH CS
   Epimerase  1 ilVtGa.tGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAavggva 78
                +l+tG  +G iG al+++++++g  v + +r+ +a +  ++++++   ld+t ++    a+++++++e q+d+ ++ A+ gg +
  CDO73057.1  8 VLITGCsKGGIGFALCEEFASRGSIVYATARRLDAMHGFSHKNIHPLALDVTSDDsvqnAVQAVIDREgQIDVLVNNAGLGGTG 91
                68999626*****************************9999999********99977888999999999********9988765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.2e-07   0.00065       3      99 ..      15     140 ..      14     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.2e-07
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC.......HHHH...... CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk.......gadaVvsalggggk.......deeg...... 77 
                      G++G +l++e ++rg   v a +R+ + ++ ++ +++++ + +dvt+ +++++a++       ++d+ v ++g gg+       d  +      
      CDO73057.1  15 KGGIGFALCEEFASRG-SIVYATARRLDAMHGFS-HKNIHPLALDVTSDDSVQNAVQavidregQIDVLVNNAGLGGTgdpgaviD--Vpmddii 105
                     69*************6.899***********996.9********************988888877799888886666643445551..0445556 PP

                     .............HHHHHHHHHHCT--EEEEEEET CS
  NAD_binding_10  78 .............aknivdaakeagvkRfvlvsai 99 
                                  ak+++  + + +   +v v++i
      CDO73057.1 106 rmfdtnvyaairtAKAVIPHMAARKSGTIVNVGSI 140
                     66666668888878888888877777777777776 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.5e-05      0.17      20      90 ..       7      85 ..       4      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.5e-05
                TEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS--...-TT-E..EEE--SHHHHHHHHHHHHTT-...SEEEE-- CS
         DFP 20 VRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvslet...pegve..vvkvesaeemleaveealkea...divimaA 90
                V +i+  S G  G+al+e++a+rG  V   +   +  +   +++++   ++v+s ++ ++av++ ++++   d+++  A
  CDO73057.1  7 VVLITGCSKGGIGFALCEEFASRGSIVYATARRLDAMHgfsHKNIHplALDVTSDDSVQNAVQAVIDREgqiDVLVNNA 85
                5579999********************9999886433223344554347889999999999999885555569998877 PP

>> Proho_convert  Prohormone convertase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014      0.28       2      17 ..     198     213 ..     197     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  Proho_convert   2 rgpedslYsdYsDgFY 17 
                    + pe+slY dY D+ +
     CDO73057.1 198 KLPENSLYADYIDSLF 213
                    669**********865 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00019      0.38       3      59 ..       8      85 ..       6      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
                   EEEES.TTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHH.....HHH--SEEEE-- CS
  RmlD_sub_bind  3 ilvtG.anGqlGseLakqlaeeglevlaltre...............eldltdaeavaell.....keakpdvvvnaA 59
                   +l+tG ++G +G +L +++a++g  v+a+ r+               +ld+t  ++v++++     +e + dv+vn A
     CDO73057.1  8 VLITGcSKGGIGFALCEEFASRGSIVYATARRldamhgfshknihplALDVTSDDSVQNAVqavidREGQIDVLVNNA 85
                   78999568*********************9999**************99***99999999966666666777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2130.25
//
Query:       CDO73058.1  [L=92]
Description: hypothetical protein BN946_scf185007.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 684.01
//
Query:       CDO73059.1  [L=266]
Description: hypothetical protein BN946_scf185007.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-17   62.6   0.2    8.1e-17   61.9   0.2    1.2  1  APH             Phosphotransferase enzyme family
    3.2e-05   23.6   0.0    5.5e-05   22.8   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.11   11.8   0.0       0.25   10.7   0.0    1.6  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.13   11.5   0.0       0.22   10.8   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
       0.18   11.4   0.0        1.1    8.8   0.0    1.9  2  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.2   2.3e-20   8.1e-17      37     229 ..      42     245 ..      25     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.3e-20
                 HHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-............... CS
         APH  37 irrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalpla............... 116
                 + +e++ lr+++k+   pvP+v+    ++ + g+ + l+e v g  l      +sa+q+  +le+l ++  +l  ++p+ + ++               
  CDO73059.1  42 AGAEADTLRFVRKHTTiPVPRVYV---SARGFGRTYTLMEDVRGDELQFkwvDMSAEQQSLVLEQLRDYVQQLRKLRPPRCVPSgavcslynkalrdgr 137
                 568999******99889*******...99999999***********999999************************98877777677777777776665 PP

                 .SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHH.CS CS
         APH 117 .dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrs.wt 213
                    + + l +++ +++ + + +  + +     ++  +l +++++++ + + v++HgDl p+N+lv+  + rv+++iD+e +g+ p +++l+ +l++   
  CDO73059.1 138 iTSG-RPLGPFANEAAFNDCVVEVAEPF----MDPSLLPRIRERMRDDHRIVFTHGDLAPRNILVQ--GYRVVAIIDWEESGWYPEHWELVKALWYpGF 229
                 3222.33666666666666777777777....5555666666677777889***************..99999*********************99888 PP

                 CHCCCHCHHHHHHHHC CS
         APH 214 seldpeflaallraye 229
                  +   ++++++ +  +
  CDO73059.1 230 PKKNTSWVEGMKDVVG 245
                 8888888888766655 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.5e-08   5.5e-05     140     183 ..     178     220 ..     157     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.5e-08
                     CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHH CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDl 183
                     + ++ +vf H Dl ++Nil+ +  + + +ID+E +g  +  ++l
      CDO73059.1 178 RDDHRIVFTHGDLAPRNILV-QGYRVVAIIDWEESGWYPEHWEL 220
                     45677***************.899999******99988777766 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.4     5e+03       7      34 ..      86     113 ..      81     115 .. 0.62
   2 ?   10.7   0.0     7e-05      0.25     128     168 ..     174     210 ..     156     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
         Kdo   7 qgkvveeaegRrttwfvvaekvnaalrk 34 
                 q k+v+ + ++++++ ++ +++  +lrk
  CDO73059.1  86 QFKWVDMSAEQQSLVLEQLRDYVQQLRK 113
                 5566666666666666666666666665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7e-05
         Kdo 128 grliaklhragvnHadlyaknillqqeeeeeaeiwliDldk 168
                    +++ hr+   H+dl ++nil+q        +++iD + 
  CDO73059.1 174 RERMRDDHRIVFTHGDLAPRNILVQGYR----VVAIIDWEE 210
                 5566777*****************9887....888888875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.1e-05      0.22     124     146 ..     185     207 ..     177     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.1e-05
                  EEEST-SGGGEEEEETTEEEE-S CS
  Pkinase_Tyr 124 lvHrdlaarNvLlsenkvvkisD 146
                  + H dla rN+L++  +vv i D
   CDO73059.1 185 FTHGDLAPRNILVQGYRVVAIID 207
                  78*****************9988 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.16   5.7e+02      55     102 ..      42      94 ..      35     115 .. 0.57
   2 ?    8.8   0.0   0.00031       1.1     124     150 ..     182     209 ..     162     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHTT.--S--EEEEE....TTEEEEE--EETTEEGGBHHHCG CS
        RIO1  55 aekEfrnLkrleeag.vpvPkpielk....rhvlvmefigedgvaapklkdve 102
                 a  E + L+ ++++  +pvP+++       r   +me +  d+++ + ++   
  CDO73059.1  42 AGAEADTLRFVRKHTtIPVPRVYVSArgfgRTYTLMEDVRGDELQFKWVDMSA 94 
                 55677788877776659999988654111145677777776665555554444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00031
                 TSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 124 eaglvHaDLSeyNvlvded.kvviIDvs 150
                 +    H+DL   N+lv+    v iID+ 
  CDO73059.1 182 RIVFTHGDLAPRNILVQGYrVVAIIDWE 209
                 33456************9967889**95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1832.69
//
Query:       CDO73060.1  [L=285]
Description: hypothetical protein BN946_scf185007.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-50  169.9   1.7    5.7e-50  169.5   1.7    1.1  1  adh_short       short chain dehydrogenase
    3.2e-35  121.8   0.3    4.4e-35  121.3   0.3    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.7e-11   44.0   0.0    5.2e-11   42.5   0.0    1.7  1  DUF1776         Fungal family of unknown function (DUF1776)
    8.6e-07   28.6   0.2    2.5e-06   27.1   0.2    1.8  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.2e-05   25.3   0.5    3.7e-05   23.7   0.5    1.8  1  KR              KR domain
    3.2e-05   23.9   0.1    7.7e-05   22.7   0.1    1.7  2  NAD_binding_10  NAD(P)H-binding
     0.0086   15.2   0.0      0.013   14.6   0.0    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.068   12.6   0.0    1.7  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      0.056   13.3   0.2      0.099   12.5   0.2    1.4  1  DFP             DNA / pantothenate metabolism flavoprotein
       0.13   12.9   0.2        1.3    9.7   0.0    2.2  2  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   1.7   3.2e-53   5.7e-50       1     191 [.       6     191 ..       6     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 3.2e-53
                 SEEEEESTTS.HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGass.GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 kvvlvtG+s+ GIG a++k++a+ G+kv++ +r+ e++ +++++ +     +   ++Dvtd+++++a+v+++++k g++d+LvnNAG+t sgp++e++ 
  CDO73060.1   6 KVVLVTGCSDgGIGSALCKQYAATGCKVYASARRVEAM-RTLTHPN-----IERTRMDVTDEASIQAAVDQIIEKDGRIDILVNNAGMTCSGPVAEVEL 98 
                 89******8637******************99998877.4444444.....8899******************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 e+++r++++N++g++ ++r v+p+m +++sG+Ivn++S+ ++ p++    Y++sKaav++lt++l +e  p gi v+ v+ G+ +T++ k+  
  CDO73060.1  99 ERIQRTFDTNVFGIIRTARVVIPHMAARKSGTIVNIGSILAQTPLPFAGIYASSKAAVHSLTETLYMECIPLGIAVVLVNAGGARTNIIKNMG 191
                 **************************************************************************************9988765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.3   2.4e-38   4.4e-35       4     184 ..      16     192 ..      12     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 2.4e-38
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                    gIG a+ k++a+ G++v ++ ++ ea   +++l+   + e  ++DVtde++++a+v+++ ek g++Dilvnnag++ +  gp++e++ e ++r++d
    CDO73060.1  16 GGIGSALCKQYAATGCKVYASARRVEA---MRTLTH-PNIERTRMDVTDEASIQAAVDQIIEKDGRIDILVNNAGMTCS--GPVAEVELERIQRTFD 106
                   69****************999988888...455544.233459************************************..**************** PP

                   HHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2 101 vnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                   +n+ +++++a+ ++p+m+++  g ivn+ s+ a+  +p   +y+ +Kaa+++lt +l +e+ p gi v  v +g  +T++ +++ +
    CDO73060.1 107 TNVFGIIRTARVVIPHMAARksGTIVNIGSILAQTPLPFAGIYASSKAAVHSLTETLYMECIPLGIAVVLVNAGGARTNIIKNMGQ 192
                   ***************7776658*********************************************************9988875 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.9e-14   5.2e-11     104     295 ..      89     265 ..      80     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.9e-14
     DUF1776 104 ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnldl 202
                  +gp++++ l+ ++ ++ ++++  i t    +p++++   +k+ +iv   si+++  lpf+++ a    a+++l+e+L  e+ p++i v+ ++ G    
  CDO73060.1  89 CSGPVAEVELERIQRTFDTNVFGIIRTARVVIPHMAA---RKSGTIVNIGSILAQTPLPFAGIYASSKAAVHSLTETLYMECIPLGIAVVLVNAGGART 184
                 58**********************************9...89**************************************************9997666 PP

     DUF1776 203 angsqsnskiasvagsevlsWsesaralygpnyvsilskaisaksirrgsslreLhnalfdllegsskkrvvyvGkgarlyslvgkllpeglv 295
                     +   ++  +  +           ly+  y+ i+ ++   k++++gs+   + ++++    ++ + r + vG g++l++ +  + p+g++
  CDO73060.1 185 N-IIKNMGQQFDIPST----------TLYA-PYEEIIREEFDPKRTEQGSPPEDIARVVVAKSLAAKPDRHIAVGAGSFLVNNILPWFPRGVL 265
                 3.22333333334444..........5999.599999999*******************99999999***********************987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   1.4e-09   2.5e-06       1     156 [.       8     163 ..       8     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.4e-09
                 EEEETTT.SHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S.---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGat.GfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAa.vggvaassedpadfieknl 92 
                 +lVtG + G iGsal+k+ ++ g +v + +r+ +a +t  ++++e +++d+td++    a+++++++  ++d+ ++ A+  ++ ++   + ++   +  
  CDO73060.1   8 VLVTGCSdGGIGSALCKQYAATGCKVYASARRVEAMRTLTHPNIERTRMDVTDEAsiqaAVDQIIEKDgRIDILVNNAGmTCSGPVAEVELER---IQR 103
                 69999755*********************************************99777788888888899******99976666554433222...333 PP

                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHH CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveay 156
                    +n++  +r+a v  + ++      G   +    + + ++pl+    Ya +K+a+++l+e +
  CDO73060.1 104 TFDTNVFGIIRTARV-VIPHMAA-RKSGTIVN--IGSILAQTPLPFAGIYASSKAAVHSLTETL 163
                 455566666665555.2222222.11121111..333344446666777777777777666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.5   2.1e-08   3.7e-05       3     121 ..       8     117 ..       6     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.1e-08
                 EEEETTT.SHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGl.GgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 +l+tG+  Gg+G +l+++ a+ g + +   +R+        + +++l+    ++e  ++Dv+d+++++a++++i +++++i   ++ Ag++  ++++e+
  CDO73060.1   8 VLVTGCSdGGIGSALCKQYAATGCK-VYASARR-------VEAMRTLT--HPNIERTRMDVTDEASIQAAVDQIIEKDGRIDILVNNAGMTCSGPVAEV 96 
                 5777775477888888888777765.4444444.......12334444..4699********************************************* PP

                 -HHHHHHHHTTTTHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhe 121
                 + e++++ +   v G+    +
  CDO73060.1  97 ELERIQRTFDTNVFGIIRTAR 117
                 *********999988765555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   4.3e-08   7.7e-05       4      60 ..      16      70 ..      14     161 .. 0.83
   2 ?   -2.1   0.0       1.7     3e+03     171     179 ..     225     233 ..     208     279 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.3e-08
                    SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT CS
  NAD_binding_10  4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkg 60
                    G++G++l+k+ +a  g +v a +R+ e +  l  ++++e + +dvtd++++++a+++
      CDO73060.1 16 GGIGSALCKQYAAT-GCKVYASARRVEAMRTLT-HPNIERTRMDVTDEASIQAAVDQ 70
                    9*************.5**************997.9*******************984 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
                     HHHHHHHHH CS
  NAD_binding_10 171 adVAdvlva 179
                     +d+A+v+va
      CDO73060.1 225 EDIARVVVA 233
                     444444443 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.3e-06     0.013       3      62 ..       8      88 ..       6     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.3e-06
                   EEEES.TTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHH.....HHH--SEEEE----- CS
  RmlD_sub_bind  3 ilvtG.anGqlGseLakqlaeeglevlaltre...............eldltdaeavaell.....keakpdvvvnaAAyt 62
                   +lvtG ++G +Gs+L kq a+ g++v+a  r+               ++d+td++++++++     k+ + d++vn A  t
     CDO73060.1  8 VLVTGcSDGGIGSALCKQYAATGCKVYASARRveamrtlthpniertRMDVTDEASIQAAVdqiieKDGRIDILVNNAGMT 88
                   78999568*********************9999************************999966666666888999988776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-05     0.068       1     107 [.       9     113 ..       9     131 .. 0.72
   2 ?   -1.6   0.0      0.76   1.4e+03     152     167 ..     148     163 ..     139     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
                    EEETTT.SHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.....T-SEEEE--S---... CS
  GDP_Man_Dehyd   1 LiTGia.GfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.....qpdevynLAAqsh... 87 
                    L+TG + G iGs l+++  + g +v+   rr ++     +++l+       ++n++  ++D+tD++s++ +++++     ++d  +n A++ +   
     CDO73060.1   9 LVTGCSdGGIGSALCKQYAATGCKVYASARRVEA-----MRTLT-------HPNIERTRMDVTDEASIQAAVDQIiekdgRIDILVNNAGMTCsgp 92 
                    8999855*****************9985555444.....33443.......35788899*****99999888877555567777777777654333 PP

                    .HHHHTTSHHHHHHHHTHHHH CS
  GDP_Man_Dehyd  88 .VdvsfekPeytaevnvlGtl 107
                      +v +e  ++t+++nv G +
     CDO73060.1  93 vAEVELERIQRTFDTNVFGII 113
                    234566666667777776665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.76
                    HHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 152 PYaaaKlyadwivvny 167
                     Ya +K++ + +++  
     CDO73060.1 148 IYASSKAAVHSLTETL 163
                    69********999865 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   5.5e-05     0.099      22      91 ..       9      86 ..       5     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
                EEEE----HHHHHHHHHHHHTT-EEEEEE-S-.S...S---T.T-EEEE--SHHHHHHHHHHHHTT-...SEEEE--- CS
         DFP 22 fisNrSSGkmGyalAeaaaarGaeVtlvsgpv.s...letpe.gvevvkvesaeemleaveealkea...divimaAA 91
                +++  S G  G al+++ aa G +V   +  v +   l++p+ + ++++v++ +++++av++ +++    di++  A 
  CDO73060.1  9 LVTGCSDGGIGSALCKQYAATGCKVYASARRVeAmrtLTHPNiERTRMDVTDEASIQAAVDQIIEKDgriDILVNNAG 86
                6788899******************987776623221444653457999*************9987777899999886 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00072       1.3       3      70 ..      16      88 ..      12     106 .. 0.89
   2 ?    0.7   0.0      0.46   8.3e+02      68      92 ..     156     180 ..     153     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00072
                   SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHH.....S-EEEEE-S--H CS
  NAD_binding_3  3 GaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahl.....dpdvvVEcasse 70
                   G+iGsa+++q ++   ++ +  + v   ++l++ ++++ + + +  +++++ ++++     ++d++V +a+ +
     CDO73060.1 16 GGIGSALCKQYAATGCKVYASARRVEAMRTLTHPNIERTRMDVTDEASIQAAVDQIiekdgRIDILVNNAGMT 88
                   99**********99999888888888888899999999999999999999999999999999*******9975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.46
                    --HHHHTTHHHHHHTTEEEE-S--C CS
  NAD_binding_3  68 sseavaelvlkaLkagkdvvtankg 92 
                     ++ ++ l+ +++  g+ vv +n g
     CDO73060.1 156 VHSLTETLYMECIPLGIAVVLVNAG 180
                    567788999*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2108.74
//
Query:       CDO73061.1  [L=212]
Description: hypothetical protein BN946_scf185007.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-12   44.6   1.3    2.1e-06   27.2   0.2    3.5  3  EF-hand_6  EF-hand domain
    5.2e-09   35.0   2.7    1.3e-05   24.4   0.1    3.8  4  EF-hand_1  EF hand
    2.6e-07   31.0   1.3    0.00055   20.3   0.0    3.1  3  EF-hand_7  EF-hand domain pair
      0.001   18.5   1.1     0.0031   16.9   0.2    2.1  2  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.037   14.3   0.0          5    7.5   0.0    2.8  3  EF-hand_9  EF-hand domain
       0.18   11.7   0.9        1.7    8.6   0.0    2.7  3  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   6.9e-10   2.1e-06       1      31 []      47      76 ..      47      76 .. 0.95
   2 !   12.9   0.1   2.6e-05     0.078       1      27 [.     140     166 ..     140     182 .. 0.91
   3 ?    1.1   0.0      0.17   5.1e+02      12      27 ..     186     201 ..     185     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.9e-10
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                ++reaF l+D+dgdG ++ ++l+++++ +lg
  CDO73061.1 47 QFREAFALIDHDGDGIVSEQDLKHIFS-SLG 76
                59************************9.887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.6e-05
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 el +aF+ fD  ++G++  +E+rk+l 
  CDO73061.1 140 ELLAAFECFDEGDTGFVKCDEIRKWLG 166
                 5789*********************98 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                 +++G+ ++ E++k+lr
  CDO73061.1 186 TRNGQFNYREWVKVLR 201
                 689***********98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   4.3e-09   1.3e-05       2      28 ..      48      74 ..      47      75 .. 0.94
   2 ?   -1.8   0.0         1     3e+03      16      26 ..     118     128 ..     112     130 .. 0.81
   3 !    5.8   0.2    0.0038        11       1      26 [.     140     165 ..     140     168 .. 0.90
   4 ?    2.4   0.0     0.046   1.4e+02      13      27 ..     187     201 ..     185     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.3e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                ++e+F+++D DgdG ++ +++k+++++
  CDO73061.1 48 FREAFALIDHDGDGIVSEQDLKHIFSS 74
                89**********************987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
                 EEEHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkell 26 
                  I+f  f++++
  CDO73061.1 118 GITFPMFLTMM 128
                 59999999999 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0038
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 el  +F+ fD   +G++  +E +++l
  CDO73061.1 140 ELLAAFECFDEGDTGFVKCDEIRKWL 165
                 67789****************99987 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.046
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 ++G+ ++ E++++l+
  CDO73061.1 187 RNGQFNYREWVKVLR 201
                 69*********9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.8e-07   0.00055       2      50 ..      46      88 ..      45     129 .. 0.69
   2 !    7.8   0.1    0.0015       4.3       3      51 ..     140     182 ..     138     201 .. 0.80
   3 ?    0.7   0.0      0.25   7.4e+02      15      40 ..     187     207 ..     185     212 .] 0.72

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.8e-07
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellf 50
                ++ +eaF ++D dgdg +++++l++++       + g ++s+  l++l+
  CDO73061.1 46 QQFREAFALIDHDGDGIVSEQDLKHIFS------SLGISPSRSTLDQLL 88
                57899********************999......555555554444443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfk 51 
                 +l  aF+ +D  ++g++  +e+++ l       + g+ + ++e+++++k
  CDO73061.1 140 ELLAAFECFDEGDTGFVKCDEIRKWLG------DVGERMEEHEIDKFLK 182
                 567789999999999999999998887......8888888889998877 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.25
   EF-hand_7  15 gdgyldkeellrllrkifqgagegsk 40 
                 ++g  +++e  ++lr++ ++     +
  CDO73061.1 187 RNGQFNYREWVKVLRINTDN-----E 207
                 68999****888**985443.....3 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2     1e-06    0.0031       2      23 ..      49      70 ..      48      73 .. 0.88
   2 ?   -0.4   0.1      0.31   9.2e+02       3       9 ..     143     149 ..     141     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                +++F  iD +gDG +s + Lk 
  CDO73061.1 49 REAFALIDHDGDGIVSEQDLKH 70
                678***************9986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.31
                 HHHHHH- CS
   EF-hand_5   3 dtFqaiD 9  
                 ++F+++D
  CDO73061.1 143 AAFECFD 149
                 46****9 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.037   1.1e+02       3      41 ..      51      88 ..      49      99 .. 0.88
   2 ?    7.5   0.0    0.0017         5       3      40 ..     144     180 ..     143     183 .. 0.90
   3 ?   -0.9   0.0      0.71   2.1e+03      19      35 ..     195     211 ..     185     212 .] 0.75

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.037
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeela 41
                 F + D +  G V  ++l+ +    +  +p+ s L++l 
  CDO73061.1 51 AFALIDHDGDGIVSEQDLKHIFSSLGI-SPSRSTLDQLL 88
                599***********9999999999999.99999999886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeel 40 
                  Fe +D   tG V+  ++ + L  v++   ee+e++++
  CDO73061.1 144 AFECFDEGDTGFVKCDEIRKWLGDVGE-RMEEHEIDKF 180
                 69*************************.7789988876 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.71
   EF-hand_9  19 rlidyLravtaqdpees 35 
                 + +++Lr++t ++ ++s
  CDO73061.1 195 EWVKVLRINTDNEETDS 211
                 56789*****9887776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00056       1.7      27      47 ..      47      67 ..      46      80 .. 0.87
   2 ?   -3.0   0.0       2.2   6.7e+03      43      52 ..     119     128 ..     118     131 .. 0.83
   3 ?    0.4   0.1      0.19   5.8e+02      32      48 ..     145     161 ..     138     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00056
   EF-hand_8 27 evdilfrefDtdgdGkisfeE 47
                ++++ f ++D dgdG++s  +
  CDO73061.1 47 QFREAFALIDHDGDGIVSEQD 67
                67888999*********9876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
   EF-hand_8  43 isfeEFcvll 52 
                 i+f  F+ ++
  CDO73061.1 119 ITFPMFLTMM 128
                 7899999887 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.19
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f +fD+ + G ++++E 
  CDO73061.1 145 FECFDEGDTGFVKCDEI 161
                 66777777777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1624.88
//
Query:       CDO73062.1  [L=445]
Description: hypothetical protein BN946_scf185007.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        3.1    8.3   8.7        4.8    7.7   8.7    1.3  1  SOBP            Sine oculis-binding protein
        5.3    5.7   7.8        7.1    5.3   7.8    1.2  1  NPR3            Nitrogen Permease regulator of amino acid tra


Domain annotation for each model (and alignments):
>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.7   0.00054       4.8      75     234 ..      13     168 ..       3     213 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00054
        SOBP  75 sncrsrsaspaskrsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkqvkagsskssetkagll 173
                 +n+  r  +pa++++++++p+ sk + p s+  s++ +k+ ++ +++s +l ek +   + +++ +++   +k k++ ++ +    g ++++e+++ + 
  CDO73062.1  13 RNL--RDRQPAEQKETAAKPA-SKAKKPASTRKSAAGKKAAQTKKEESPTLGEKREPETEEKQEDTNEPPAKKAKTEEKQTTTSGGGAHANVEKENAPA 108
                 344..4445555555555554.44444444444555556666666665555554444444433333333333334444444444445555555555555 PP

        SOBP 174 qkqqkalplsaeleessvpkpflrpppsiqelqsslpnqslpkiapppkppstlappsnga 234
                 +++++++  +a + e    + f rp+ + +e +s    q +   ++p+ pp++ a ++++ 
  CDO73062.1 109 KRHPAESMYQAGTIERGHIYFFYRPKIELEEAHSLDDVQRFYMLLVPR-PPQFAAHSDSAR 168
                 545566666666666656777778888777777777777777777777.888777777664 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.8    0.0008       7.1      56     115 ..      29      88 ..       4     169 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0008
        NPR3  56 rkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdees 115
                 +  s+ +k +++++s++ ++  +++++++ +  +k++ e+eek+++++e  +++++ ee+
  CDO73062.1  29 KPASKAKKPASTRKSAAGKKAAQTKKEESPTLGEKREPETEEKQEDTNEPPAKKAKTEEK 88 
                 222111111111111111111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1260  (0.0702772); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 3046.95
//
Query:       CDO73063.1  [L=103]
Description: hypothetical protein BN946_scf185007.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 793.65
//
Query:       CDO73064.1  [L=687]
Description: hypothetical protein BN946_scf185007.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-08   34.4  19.0      9e-05   22.7   1.4    3.7  3  zf-C2H2      Zinc finger, C2H2 type
     0.0028   18.3   1.3     0.0028   18.3   1.3    3.7  3  zf-C2H2_4    C2H2-type zinc finger
     0.0032   18.1   0.8     0.0032   18.1   0.8    3.5  4  FOXP-CC      FOXP coiled-coil domain
     0.0034   17.6   0.3     0.0034   17.6   0.3    3.2  4  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0067   16.8   4.2     0.0067   16.8   4.2    3.0  2  zf-H2C2_2    Zinc-finger double domain
  ------ inclusion threshold ------
      0.017   15.5   0.3      0.017   15.5   0.3    4.0  4  zf-met       Zinc-finger of C2H2 type
          1    9.4  13.9       0.71    9.9   3.2    2.4  2  Zap1_zf2     Zap1 zinc finger 2


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.8    0.0004         1       2      23 .]      94     118 ..      93     118 .. 0.91
   2 !   11.5   2.9   0.00012      0.32       2      23 .]     130     153 ..     129     153 .. 0.96
   3 !   22.7   1.4   3.5e-08     9e-05       1      23 []     159     181 ..     159     181 .. 0.97

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0004
                 EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirt.H 23 
                  C   +C+k+ ++++ L +H++  H
  CDO73064.1  94 ACQwtGCDKVLSDPETLYNHLCNdH 118
                 588889***************9888 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00012
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                 +C+  dCg ++  +++ ++H+r+H
  CDO73064.1 130 TCKwkDCGTTCAKRDHITSHLRVH 153
                 79999******************9 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.5e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C++C+k+Fkr+ +Lk+H ++H
  CDO73064.1 159 HVCEICKKPFKRPQDLKKHEKIH 181
                 79******************999 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.8     0.046   1.2e+02       2      20 ..      94     114 ..      93     118 .. 0.88
   2 ?    2.3   2.1      0.16   4.1e+02       3      23 ..     131     153 ..     129     154 .. 0.87
   3 !   18.3   1.3   1.1e-06    0.0028       1      23 [.     159     181 ..     159     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.046
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHl 20 
                  C +  C+k+ s++++L +Hl
  CDO73064.1  94 ACQWtgCDKVLSDPETLYNHL 114
                 577777**************7 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHlkth 23 
                 C++  Cg+++  ++++ +Hl+ h
  CDO73064.1 131 CKWkdCGTTCAKRDHITSHLRVH 153
                 77777***************998 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 1.1e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 + C+iC+k+F+++++L++H k h
  CDO73064.1 159 HVCEICKKPFKRPQDLKKHEKIH 181
                 58******************999 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.8   1.3e-06    0.0032       6      31 ..      94     119 ..      91     130 .. 0.87
   2 !    7.8   2.7    0.0019       4.9       6      28 ..     130     152 ..     125     165 .. 0.87
   3 ?   -2.3   2.4       2.8   7.1e+03      12      35 ..     164     190 ..     159     199 .. 0.67
   4 ?   -4.0   1.6         7   1.8e+04      53      67 ..     412     426 ..     408     427 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHa 31 
                  C+W gC+kvl+d e++++hl ++H 
  CDO73064.1  94 ACQWTGCDKVLSDPETLYNHLCNDHI 119
                 7***********************95 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0019
     FOXP-CC   6 vCkWPgCekvledveeflkhlns 28 
                 +CkW +C + + + ++ ++hl+ 
  CDO73064.1 130 TCKWKDCGTTCAKRDHITSHLRV 152
                 6*******************975 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.8
     FOXP-CC  12 Cekvledveeflkh...lnseHalddk 35 
                 C+k ++  +++ kh     +eH+ + k
  CDO73064.1 164 CKKPFKRPQDLKKHekiHTEEHHAQHK 190
                 899999999999983322345554444 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 7
     FOXP-CC  53 qlvkEkerLqaMmaH 67 
                 q ++ ++  q+M++H
  CDO73064.1 412 QHAARQQHAQSMQHH 426
                 556667888999998 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.46   1.2e+03       7      21 ..     100     114 ..     100     114 .. 0.94
   2 ?   -3.9   2.3         7   1.8e+04       4      24 ..     128     149 ..     128     150 .. 0.72
   3 !   17.6   0.3   1.3e-06    0.0034       2      22 ..     159     179 ..     158     179 .. 0.94
   4 ?   -4.8   3.3         7   1.8e+04      12      24 ..     181     193 ..     180     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.46
                  TTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHl 21 
                  CdK  ++ ++l nHl
   CDO73064.1 100 CDKVLSDPETLYNHL 114
                  **********99996 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7
                  BTTTT.BBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   4 CvlCd.KyFksenaldnHlkSK 24 
                  C +C+ K + +  a + H++S+
   CDO73064.1 128 CLTCKwKDCGTTCAKRDHITSH 149
                  7788777777766777888886 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.3e-06
                  CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlk 22 
                  + C++C+K Fk  ++l++H+k
   CDO73064.1 159 HVCEICKKPFKRPQDLKKHEK 179
                  67*****************98 PP

  == domain 4  score: -4.8 bits;  conditional E-value: 7
                  SSHHHHHCCTTSH CS
  zf-C2H2_jaz  12 ksenaldnHlkSK 24 
                  ++e+   +H+ SK
   CDO73064.1 181 HTEEHHAQHKHSK 193
                  57888899*9999 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   4.2   2.6e-06    0.0067       3      25 ..     147     169 ..     145     170 .. 0.91
   2 ?    0.2   3.7      0.48   1.2e+03       1      12 [.     173     184 ..     173     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFk 25 
                 + H+r+Ht+ kp+ C+ C+k Fk
  CDO73064.1 147 TSHLRVHTPLKPHVCEICKKPFK 169
                 58******************887 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.48
   zf-H2C2_2   1 nLrrHirkHtge 12 
                 +L++H + Ht e
  CDO73064.1 173 DLKKHEKIHTEE 184
                 69********76 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.16   4.2e+02       6      20 ..     100     114 ..      99     115 .. 0.96
   2 ?   -1.3   0.2       1.3   3.3e+03       6      21 ..     136     151 ..     134     153 .. 0.88
   3 ?   15.5   0.3   6.5e-06     0.017       2      21 ..     160     179 ..     159     182 .. 0.90
   4 ?   -1.9   2.5         2     5e+03      14      25 .]     414     425 ..     411     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
      zf-met   6 CnvtfnsesqlksHl 20 
                 C+++++++ +l +Hl
  CDO73064.1 100 CDKVLSDPETLYNHL 114
                 **************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C +t+  + +  sHl+
  CDO73064.1 136 CGTTCAKRDHITSHLR 151
                 9999999999999997 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6.5e-06
      zf-met   2 yCelCnvtfnsesqlksHlq 21 
                  Ce+C++ f+ +++lk H +
  CDO73064.1 160 VCEICKKPFKRPQDLKKHEK 179
                 5*****************87 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2
      zf-met  14 sqlksHlqGKkH 25 
                 ++ ++H q+ +H
  CDO73064.1 414 AARQQHAQSMQH 425
                 6779******99 PP

>> Zap1_zf2  Zap1 zinc finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.2   0.00028      0.71       1      24 []      95     118 ..      95     118 .. 0.96
   2 ?    4.8   3.0     0.011        28       1       7 [.     131     137 ..     131     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
    Zap1_zf2   1 CnWkDCdFegeDicSLiNHINdkH 24 
                 C+W+ Cd   +D+++L NH   +H
  CDO73064.1  95 CQWTGCDKVLSDPETLYNHLCNDH 118
                 *******************98888 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.011
    Zap1_zf2   1 CnWkDCd 7  
                 C+WkDC 
  CDO73064.1 131 CKWKDCG 137
                 ******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4940.94
//
Query:       CDO73065.1  [L=1072]
Description: hypothetical protein BN946_scf185007.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.5e-190  631.5   0.7   9.9e-190  630.9   0.7    1.3  1  DUF3591       Protein of unknown function (DUF3591)
    0.00089   19.3   0.2     0.0019   18.3   0.2    1.5  1  TFIIF_beta    TFIIF, beta subunit HTH domain
  ------ inclusion threshold ------
       0.15   12.0   0.2       0.38   10.7   0.2    1.7  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
       0.32   10.8   1.8        1.2    9.0   0.1    2.6  2  NifT          NifT/FixU protein


Domain annotation for each model (and alignments):
>> DUF3591  Protein of unknown function (DUF3591)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  630.9   0.7  2.2e-193  9.9e-190       1     441 []     318     773 ..     318     773 .. 0.98

  Alignments for each domain:
  == domain 1  score: 630.9 bits;  conditional E-value: 2.2e-193
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxx RF
     DUF3591   1 fnlsnDkaYealkenkqskvrstlgnlkveHSlpAlkLqlpfyktklskkelrsfHrprlkvk......................kkakgkeekellkk 77 
                 fn+snD++Ye++ke  +++vr+t+g+l veH++pA+kLqlpfykt+lsk+e+rsfHrp+l+++                      k  kg++  e l++
  CDO73065.1 318 FNISNDQFYEVSKEGGRHRVRQTFGQLVVEHAYPAQKLQLPFYKTRLSKQEARSFHRPALQFPsnieihfskvrtakkkkdragrKVGKGGDVGEGLHR 416
                 9***********************************************************************************8799*********** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591  78 tkDLslkdtskvvllEYseeyPpllsnvGMgsklinYYrkkkekDtsrpklelGetvvlepedksPFlnlGevepgetvqtlennliraPifkhkvkst 176
                 t DLsl+dts++vl+E+see+Pp++sn+GMgs l+nYYrkk++kD+  pk +lGe+ v+ep+d+sPF+++G+v pg+tv++l+nnliraP+f++k+ st
  CDO73065.1 417 TGDLSLRDTSNFVLWEFSEEHPPIISNFGMGSILVNYYRKKNDKDDYIPKNDLGEPIVIEPQDESPFMKFGYVYPGQTVPALYNNLIRAPLFRQKPYST 515
                 *************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591 177 DFLlirsttkekkkyylreidnlfvvGqtlPlveVpgphsrkvtnfsknrLkviiyrllrkskekrikvedikkafpdqselqiRkrLkefaeyqrkge 275
                 DFL+ir+t+k ++kyy+rei+nlfvvGqt+P++eVpgphsrk+tn++k rL++i+++ll+ks+ekr+k+++++k+fpdq+elq+R+rLkef+ey+r+g 
  CDO73065.1 516 DFLVIRTTVKGESKYYIREINNLFVVGQTYPVTEVPGPHSRKITNTIKLRLQIIAFKLLEKSSEKRLKISRLMKYFPDQNELQMRQRLKEFMEYHRRGP 614
                 *******99****************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591 276 dsgvWklkeeerlpseeeirklvtPEdvcllesmqvgeqrlkdagyakeeeeeeedekkeeskleleeqlapWnttknFlaAtqgkamlqlhGegDPtG 374
                 ++g+W+lk++ ++ps++++ k+vtPE+v+l esmqvg+++l+dagy+ + e +eed    e +l++e+qlapW ttknFl Atq kaml+lhGegDPtG
  CDO73065.1 615 HQGFWRLKSNWTIPSDADMLKMVTPEQVVLSESMQVGQRHLQDAGYSYNGEVAEED----EGNLSIEQQLAPWITTKNFLFATQAKAMLKLHGEGDPTG 709
                 ************************************************99999885....788************************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591 375 rgegfsfvrtsmKegfkkageskeeklkaeaekkgtdadlrklnvaeqqkvyeeeikkiwraqrisl 441
                 rge+fsf+r+smK++f kage+ e+kl++++   ++ ++++++nvaeqq++y++ei++iw+aq +sl
  CDO73065.1 710 RGEAFSFIRVSMKDIFVKAGEDYEQKLAEAE---SRPKSAHRYNVAEQQQIYKSEIERIWKAQFDSL 773
                 *************************997555...5679*************************9886 PP

>> TFIIF_beta  TFIIF, beta subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   4.2e-07    0.0019      32      64 ..     593     625 ..     578     626 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.2e-07
  TFIIF_beta  32 rqPeayLkevLeeIAvlhrsGpfknkweLkpey 64 
                  q e  +++ L+e   +hr+Gp+++ w+Lk+++
  CDO73065.1 593 DQNELQMRQRLKEFMEYHRRGPHQGFWRLKSNW 625
                 688999************************986 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   8.5e-05      0.38      10      21 ..     858     869 ..     857     870 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.5e-05
  BCA_ABC_TP_C  10 EvrndPrVieAY 21 
                   E+++dP+Vi AY
    CDO73065.1 858 EIVRDPAVITAY 869
                   9*********** PP

>> NifT  NifT/FixU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00027       1.2      15      32 ..     462     479 ..     453     489 .. 0.78
   2 ?   -0.5   0.2      0.24   1.1e+03      18      33 ..     898     913 ..     898     924 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00027
                 EEETTTTEEEEEEEESSS CS
        NifT  15 vYvpKkDLEekvveeeke 32 
                  Y+pK DL e++v+e ++
  CDO73065.1 462 DYIPKNDLGEPIVIEPQD 479
                 5************65444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.24
                 TTTTEEEEEEEESSSS CS
        NifT  18 pKkDLEekvveeekee 33 
                 +Kk +Ee++  ++k++
  CDO73065.1 898 AKKRIEEEIARMKKNQ 913
                 79********776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1072 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7201.48
//
Query:       CDO73066.1  [L=246]
Description: hypothetical protein BN946_scf185007.g120, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-38  131.0   4.3    1.2e-36  125.6   4.3    2.2  1  PA28_beta   Proteasome activator pa28 beta subunit
    2.9e-06   27.2   0.1    6.2e-06   26.2   0.1    1.6  1  PA28_alpha  Proteasome activator pa28 alpha subunit


Domain annotation for each model (and alignments):
>> PA28_beta  Proteasome activator pa28 beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   4.3   1.3e-40   1.2e-36       2     143 ..     114     242 ..     113     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 1.3e-40
   PA28_beta   2 vksnekivelleklkpeieelieklnkvklwiqlliPkiedGnnfGVsvQeevleelsrveeeaanlldqiskyfleraklvskllkyphvedyreale 100
                 + sn++ v+l+e+lk+e+e l++ ++kvklwi+l++Pk             +vl+e++r +e+a+nl+d+ ++ +++rakl+sk+lkyph+edy+ al+
  CDO73066.1 114 IVSNKHTVDLHERLKREFEILANLCDKVKLWINLSMPK-------------DVLSEIHRSQETAYNLRDSGRQDYITRAKLCSKILKYPHLEDYALALK 199
                 578**********************************7.............8*********************************************** PP

   PA28_beta 101 elDekqllslrlvlldlrnlYavlydlitKNieKikkPrsenk 143
                 e+Dek l+  +++l+dlrn+Yavl+d+++KNieK+++P+++n+
  CDO73066.1 200 EHDEKVLYVSHQNLFDLRNVYAVLTDILHKNIEKLRTPKANNA 242
                 ****************************************997 PP

>> PA28_alpha  Proteasome activator pa28 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   6.9e-10   6.2e-06       4      31 ..      13      40 ..      10      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.9e-10
  PA28_alpha  4 kkkVdefkesltkeAEeLvskffPkkiv 31
                +k++d+f++++ +eAEe + ++fP+k+ 
  CDO73066.1 13 QKELDTFRDKVAAEAEEVIFEVFPQKVS 40
                79************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1801.08
//
Query:       CDO73067.1  [L=497]
Description: hypothetical protein BN946_scf185007.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-13   48.9  12.5    0.00058   20.6   0.1    4.7  5  WD40         WD domain, G-beta repeat
    8.5e-05   22.5   0.3     0.0011   18.8   0.0    2.6  3  eIF2A        Eukaryotic translation initiation factor eIF2A
    0.00073   19.7   0.0     0.0023   18.2   0.0    1.9  2  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA
  ------ inclusion threshold ------
        3.7    8.6   9.0         12    6.9   1.5    2.8  3  DUF1770      Fungal protein of unknown function (DUF1770)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.32   1.4e+03      28      38 .]     209     220 ..     175     220 .. 0.76
   2 !   20.6   0.1   1.3e-07   0.00058       5      38 .]     297     332 ..     293     332 .. 0.88
   3 !   17.4   0.4   1.3e-06     0.006       8      38 .]     346     378 ..     340     378 .. 0.91
   4 !   15.6   0.3     5e-06     0.022       5      38 .]     396     431 ..     392     431 .. 0.79
   5 ?   -3.1   0.1       3.9   1.7e+04       5      20 ..     460     475 ..     457     476 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.32
                 E.ETTSEEEEEE CS
        WD40  28 G.sdDgtvriWd 38 
                 + s+ g+v+iWd
  CDO73067.1 209 SwSETGKVHIWD 220
                 5566799****9 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.3e-07
                 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 + +t H ssv ++++sp  + + as+s D++v +Wd
  CDO73067.1 297 QPFTSHtSSVEDIQWSPVEPTVfASCSADQSVQVWD 332
                 6799**999****999999997368999*******9 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.3e-06
                 ESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 ++H s+v+ +++++++++l+ sG+d g +++Wd
  CDO73067.1 346 RAHeSDVNVISWNRSSTYLLlSGGDEGGIKVWD 378
                 68*999************755***********9 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 5e-06
                 EEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                   +  H  s+ts+ ++p  + ++ +++ D  v +Wd
  CDO73067.1 396 AAFHWHkASITSIEWHPTEDSIFaASGADDQVTLWD 431
                 567779777************8523456*******9 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 3.9
                 EEEESSSSEEEEEEET CS
        WD40   5 rtltGHssvtslafsp 20 
                  +  G+++v  + ++p
  CDO73067.1 460 FVHQGQKDVKEVHWHP 475
                 5556778899998887 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.49   2.2e+03      18      50 ..     123     156 ..     120     160 .. 0.69
   2 !   18.8   0.0   2.6e-07    0.0011      57     145 ..     301     392 ..     277     423 .. 0.74
   3 ?    1.2   0.0     0.067     3e+02      59      92 ..     402     434 ..     387     439 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.49
                 TEEEEEEE.E--TT-C.EEEEEEEEEESSSTT-- CS
       eIF2A  18 tsllvlvstevdktnk.syygetelyliklkkkk 50 
                 ++++  +++++ k+n+ s+y  ++l+ ++ ++ +
  CDO73067.1 123 AYIVAGTQADTAKNNEiSVYKMSSLHKTQRENDS 156
                 5677777877777665377888899988766655 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 2.6e-07
                 ESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS......CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT CS
       eIF2A  57 kkegpihdvaWspkskefaviyGkmpakvslfdlk......vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan 145
                 +++  + d++Wsp +         ++++v+++d++      v  i + +e+  N i ++ + +++ll+G g+ +G +++wd  ++kk  ++    
  CDO73067.1 301 SHTSSVEDIQWSPVEPTVF-ASCSADQSVQVWDVRakgrqsVAGIDRAHESDVNVISWNRSSTYLLLSG-GD-EGGIKVWDLRNIKKRGTTAPDP 392
                 456679*******876533.3457899*******7677777888999999******************9.44.5*********999877665443 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.067
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSC CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlkv 92 
                 +  i  ++W p+++ +    G  + +v+l+dl v
  CDO73067.1 402 KASITSIEWHPTEDSIFAASGA-DDQVTLWDLAV 434
                 3458888888888888888885.45677777765 PP

>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.1e-07    0.0023      32      67 .]     119     148 ..      99     148 .. 0.81
   2 ?   -3.9   0.0         4   1.8e+04      28      35 ..     407     414 ..     405     427 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.1e-07
                  -S-B---EEEEEEEE.----TTSS-EEEEEEEEEEEX CS
  CAF1C_H4-bd  32 lPdtvsslskqrllv.Gtqtsgkeqnylyvakvslpk 67 
                  +P t+       ++v Gtq+++ ++n++ v k+s ++
   CDO73067.1 119 FPATA-------YIVaGTQADTAKNNEISVYKMSSLH 148
                  56666.......9999*****************9886 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4
                  -EEE-S-B CS
  CAF1C_H4-bd  28 sfdwlPdt 35 
                  s++w+P +
   CDO73067.1 407 SIEWHPTE 414
                  89999964 PP

>> DUF1770  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.5    0.0028        12      39      76 ..      47      89 ..      11      90 .. 0.64
   2 ?    5.6   0.3    0.0069        31      22      67 ..     132     186 ..     117     204 .. 0.47
   3 ?   -2.8   0.0       2.8   1.3e+04      36      36 ..     435     435 ..     383     473 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0028
     DUF1770 39 k....ddesldskeeddeed..eipysvirpvsrrqtlpPlPDL 76
                +    d+e +ds++ + +ed  +i+ +v+ p++++++ pP PD+
  CDO73067.1 47 DelesDEEVVDSEARK-DEDgmDIDDEVMPPIEESEEQPPAPDV 89
                1333244444443333.3444588899***************95 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0069
     DUF1770  22 staaskkepvtleekskk.ddesldskeeddeed...eipysvirpvsr.....r 67 
                 +ta++++  v   ++ +k ++e+ + +eedd++d   e p+   r+v++     r
  CDO73067.1 132 DTAKNNEISVYKMSSLHKtQRENDSDDEEDDDDDaldEDPLLEYRSVPHlggvnR 186
                 4444444444333333331333333445555555232323223333333334432 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.8
     DUF1770  36 k 36 
                 +
  CDO73067.1 435 E 435
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3465.49
//
Query:       CDO73068.1  [L=140]
Description: hypothetical protein BN946_scf185007.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-22   78.6   0.4    4.5e-22   78.3   0.4    1.1  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.4   2.5e-26   4.5e-22       3     118 ..      19     131 ..      17     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.5e-26
                 HHHHHHHHHHHHHHHHHHHHHHHTT--SS---S......SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHHHHH CS
       MAPEG   3 lyagllallllllslivvkerrkakiaigegkanapralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvvaRvlhalgy 101
                 + ++ ++ ll++ +++v+k+r++a+i++++ +a++ +a+ +k++ ++++ +rah+N+lE +p+++   l+a+l+ + +  aa+l  ++++ R+l+++gy
  CDO73068.1  19 ATVVSTFYLLFWQAFRVGKARKRAGIEYPQVYADKAEAAAKKEAYVFNCTQRAHQNTLEVIPIVIGSTLIAGLS-Y-PIAAAALCGTWTLTRILYTIGY 115
                 5567778899**********************9999999999********************************.5.7888888888************ PP

                 HH-..SGGGHHHHHHHH CS
       MAPEG 102 iaggpppgRslgflltl 118
                  +g  p  R lg ++ l
  CDO73068.1 116 SSG-DPKKRNLGGAAVL 131
                 **9.9*****9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 977.02
//
Query:       CDO73069.1  [L=424]
Description: hypothetical protein BN946_scf185007.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.52   10.3   6.7       0.42   10.6   5.4    1.5  1  CENP-U    CENP-A nucleosome associated complex (NAC) subunit


Domain annotation for each model (and alignments):
>> CENP-U  CENP-A nucleosome associated complex (NAC) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.4   2.3e-05      0.42      27      95 ..     118     186 ..      91     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.3e-05
      CENP-U  27 sasselseksaesetpkktvqksasssveketlaeatksqsktqkkkklskgkrkksrseakdsdssds 95 
                 +++s+ s k+++  tp +    s+sss ++e+++  t++q+k +k +kl++ +r   +s+ ++++ +++
  CDO73069.1 118 DSESDTSMKTSRPRTPPRLTSASSSSSGTDEQMSLRTPHQRKLSKSVKLPHIQRLVAESQIQENEVQSE 186
                 5678889999999***999999********************************999999888875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3100.18
//
Query:       CDO73070.1  [L=132]
Description: hypothetical protein BN946_scf185007.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-35  120.3   0.0    6.7e-35  120.1   0.0    1.0  1  Transthyretin  HIUase/Transthyretin family


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   3.7e-39   6.7e-35       1     110 []       6     131 ..       6     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 3.7e-39
                    EEEEEEETTTTEE-TS-EEEEEEECTTSS.....EEEEEEEEE--TTSCESSSSEE.........GCGB-SE......EEEEEEEHHHHHHHTTS. CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleesee.....eaellaesttdadGrvkellae.........keeleag......tyklrfeteeYfekegte 76 
                    +t+hvLd + Gkpaagv+v+l++l++++      +  +  +s+td dGr+ +l +e                       yk++f+t++Yfe+++++
     CDO73070.1   6 VTCHVLDSSIGKPAAGVPVQLQQLRSADGpastfDILAEGNSVTDYDGRCMQLYPEaapgqkredL-----IklqagrLYKVVFKTKDYFESTSRK 96 
                    79*********************99988776644444667789************97776665442.....04445579***************** PP

                    .SESCEEEEEEES.TTSEEEEEEEEETTEEEEE-B CS
  Transthyretin  77 sffpevevvfevk.eeehyhvPlllspfgYstYrG 110
                    +f+p+ve++fev+ ++eh+h+Pll+sp++Y+tYrG
     CDO73070.1  97 CFYPWVEITFEVAnPAEHHHIPLLISPYSYTTYRG 131
                    *************778******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 965.82
//
Query:       CDO73071.1  [L=311]
Description: hypothetical protein BN946_scf185007.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2259.31
//
Query:       CDO73072.1  [L=300]
Description: hypothetical protein BN946_scf185007.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-28   99.2   0.0    3.5e-28   98.8   0.0    1.1  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   1.9e-32   3.5e-28      47     214 ..      56     228 ..      30     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.9e-32
  RabGAP-TBC  47 lsqIkkDvprtfp..esesfknkqgqnqLeriLkaysiynp..evgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpg..lkrklk 139
                 ls  + D+  t+p  + ++ +++++ ++L+  L+a+ + +    +gY+ G   i+a++l ++++ e+ F ++ +Lle++ lr++y     +  ++++++
  CDO73072.1  56 LSLMEDDIRTTLPsiHLFIPDKGPMYQDLRDMLCAWVVSRSdeGLGYVLGVAKIAAMIL-LNMPAEHGFIVLRNLLERHCLRSFYGGMATKddVEAYYR 153
                 788899*******7666******************97766533899*************.999**********************87665566****** PP

  RabGAP-TBC 140 vleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeel 214
                 +++ ll + +pk+y  +k++++ +  ++ +w+  lfl ++p+e ++r+wD ++leg+ f l+r alail  le++l
  CDO73072.1 154 IFDTLLADGMPKIYFNFKQHQVSPAAYLPDWIVPLFLDHLPFEACARVWDvIMLEGDAF-LYRAALAILGVLEPRL 228
                 **************************************************9999**977.*********9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1969.30
//
Query:       CDO73073.1  [L=72]
Description: hypothetical protein BN946_scf185007.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 545.41
//
Query:       CDO73074.1  [L=326]
Description: hypothetical protein BN946_scf185007.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-75  251.4   0.0    1.1e-74  250.9   0.0    1.2  1  Nop52     Nucleolar protein,Nop52
    8.1e-06   25.6   0.0    2.2e-05   24.2   0.0    1.7  2  MMS19_N   Dos2-interacting transcription regulator of RNA-Pol
  ------ inclusion threshold ------
      0.035   14.3   0.0      0.069   13.3   0.0    1.5  1  TAN       Telomere-length maintenance and DNA damage repair


Domain annotation for each model (and alignments):
>> Nop52  Nucleolar protein,Nop52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.9   0.0   1.9e-78   1.1e-74       2     215 ..      12     222 ..      11     223 .. 0.96

  Alignments for each domain:
  == domain 1  score: 250.9 bits;  conditional E-value: 1.9e-78
       Nop52   2 klakkLasndkktRdkalksLrkfLskkkkkklselellkLwkGLFycmWmsDkplvQqelaeeLaelvkslkskeaalkFlkafwetmsreWkgiDkl 100
                 +l+k+Las+dkktRdka+ksL++fLs+ +++ l+++e++kLwkG+Fyc+WmsDkplvQq la+e+ae++ ++++ + +l+Fl++fwet +reW++iD+l
  CDO73074.1  12 PLGKYLASTDKKTRDKAIKSLAAFLSDPSRDVLPKSEMAKLWKGIFYCFWMSDKPLVQQALASEIAEILLTITKLSVSLEFLRGFWETTVREWNKIDRL 110
                 699**************************999******************************************************************* PP

       Nop52 101 RlDKfllLvRrvlreslkllkkeewdkelveeylevlket..plssedkkvpnglayhladiyldelek.vleseleeeeeeedeeevplekllepfvk 196
                 R+DK+++LvRr+ ++s++ll + ewd  +++ey+++l +   pl++ed++vp++layhladiyl+el+k v++s++++         +pl++ll pf++
  CDO73074.1 111 RIDKYYMLVRRFTNASFRLLMRAEWDAAACQEYNSILTDRggPLCPEDPRVPTSLAYHLADIYLEELDKaVADSRVPSPL------PAPLSTLLMPFFT 203
                 **************************************9999***************************55555555543......47*********** PP

       Nop52 197 llkkskskallkkikeevl 215
                 l++++++++++++i++++l
  CDO73074.1 204 LAARTSTSTTYQRIQSALL 222
                 ***************9987 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.7e-09   2.2e-05       4      64 ..      13      75 ..      12     137 .. 0.83
   2 ?   -1.5   0.0      0.25   1.5e+03      78     108 ..     279     309 ..     183     323 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.7e-09
     MMS19_N  4 LgeyLtseddkvRakavslLaevlsrlpkkklseeevevLvq..Fflsrledfavlkealkgl 64
                Lg+yL s+d+k+R ka++ La++ls+ +++ l+++e++ L +  F++  ++d++++++al++ 
  CDO73074.1 13 LGKYLASTDKKTRDKAIKSLAAFLSDPSRDVLPKSEMAKLWKgiFYCFWMSDKPLVQQALASE 75
                89**************************99**********9888*************999864 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.25
     MMS19_N  78 avevlralfeevhvqslaqadRklvyellda 108
                  + +lr++f+  + +    a+R+++y l + 
  CDO73074.1 279 KKVLLRRMFDIASEPDTRDANRRKLYALWKE 309
                 3336677777777777777777777766655 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.069       8      98 ..      17     111 ..      14     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
         TAN   8 LssskikeRnkaldeLkhllsskrnktslsdlkdkawheifeaLfklv.ekEkeaylkkkkssttks..aaasRLskaasalRllvekavs......kl 97 
                 L s+  k+R+ka+++L  +ls+++++     l+++ ++++ + +f ++  ++k+ + ++ +s +  +   + ++Ls + ++lR + e++v+      +l
  CDO73074.1  17 LASTDKKTRDKAIKSLAAFLSDPSRD----VLPKSEMAKLWKGIFYCFwMSDKPLVQQALAS-EIAEilLTITKLSVSLEFLRGFWETTVRewnkidRL 110
                 789999*****************984....99*************99735666666554442.2222356666***************99977766666 PP

         TAN  98 k 98 
                 +
  CDO73074.1 111 R 111
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2559.99
//
Query:       CDO73075.1  [L=782]
Description: hypothetical protein BN946_scf185007.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-26   91.1   0.1    6.2e-24   85.2   0.1    2.5  1  GCP_N_terminal  Gamma tubulin complex component N-terminal
    1.7e-25   90.2   0.0    3.6e-25   89.1   0.0    1.5  1  GCP_C_terminal  Gamma tubulin complex component C-terminal


Domain annotation for each model (and alignments):
>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.1   6.9e-28   6.2e-24       1     300 [.       2     275 ..       2     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 6.9e-28
  GCP_N_terminal   1 lrdllylLqGisgklirfdekddervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyyrl.iaql 94 
                     + +ll++L  +s++l+  d+k      +++ ++ ll+p++++ +e+l +++  yr++++ ++   +++s+++++al+a l+++l+e y++ ++  
      CDO73075.1   2 IAELLLVLASHSSSLFPTDHK------VHPAFAPLLHPGEEQCLESLGQIALRYRKVKHACSV-LARPSSRYVSALCATLSQVLKEGYEVlVVDT 89 
                     569*************74444......45999999**************************66.889999**************9977777**** PP

  GCP_N_terminal  95 Esqlledsesi......ltLlrlevwlqetllllrvLanlveevekanl.kggallsllheaaqhgdpkvrkllsellervsrpflemlekWile 182
                     E+++l++++s       + L++l   + e+   l  L +lv+e + ++    g l++ll  ++q+g  +v+ ++s+l e+v r++ ++l++++++
      CDO73075.1  90 EAKVLQHDSSLvasgsfVPLSSLRAVFAEWDAPLASLETLVDELQAQERwPPGPLIDLLLTRSQTGIHRVSAIYSRLSEAVQRVWIAQLQAFLIH 184
                     *******9988**********************************665535******************************************** PP

  GCP_N_terminal 183 GelsDpynEfFveenesvakeklkeddseklweekYtlrkemlPsflseelaekIletGkslnflrescgdsewiekteseekeleyiddleels 277
                     G+ls                      +++ l+++ Y+l +  +Ps++s++  + I  +G+++  +++   ++++ ++ +   ++ +++ ++    
      CDO73075.1 185 GTLS----------------------PCDPLTDKNYVLIEGAVPSCISSQSRDSITYVGRAIGTVKAAKWEKQFPQDLAR--EHTKLLSSVL--- 252
                     ***5......................334456679********************************7333343222222..2223322222... PP

  GCP_N_terminal 278 sslslsleelidsayklaskrll 300
                        + +++++i ++++ +s+ l+
      CDO73075.1 253 PQDQYAFDRVIADIRTAVSEWLW 275
                     334578*************9886 PP

>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0     4e-29   3.6e-25       6     307 ..     289     752 ..     286     754 .. 0.71

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 4e-29
  GCP_C_terminal   6 kllkrylLlgqgdFisrLldalfdel.......wkpasselrlaLt.slLeeairssnaqq...............sdel.kddl.sfaldlpev 75 
                     ++l +y+Ll +g+F+ +L+  ++  +         p +   + +L  +lL  ++ ++ aqq                ++l ++   + a dl++ 
      CDO73075.1 289 ESLADYFLLRNGEFALSLIREIERLKlsrltarTVPSTMIREQDLHlALLRASLGTT-AQQdpslahlhfrlpagpIRPLlPSLTgGPAKDLSSS 382
                     6889******************99989999986444444444456514566666654.6563555555555554442222111111111133332 PP

  GCP_C_terminal  76 leeldakldpds...legldfltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslw.krrkatgarsvl................. 149
                     l++     +p+s   l     l L+Y+v+wpl+l ++ + l+ Y  +F++L  ++  + +++ +w    +a++ar ++                 
      CDO73075.1 383 LSQTP---EPTSfddLLLGTPLVLTYTVTWPLDLFLHGSDLQVYGVLFSYLSALRKTHTRVHVCWtALSNAQRARRRWtglgeggtaedlearke 474
                     33322...3333333445589*****************************************99*633333333333366788888888887666 PP

  GCP_C_terminal 150 .lkra.rllrqemlhfvsqlqyYvldeviessWreleekl.kke..................................................a 191
                      l+ + + ++ em  f+++l  Yv+ +vi  ++r++++ l   +                                                  +
      CDO73075.1 475 lLR-CgWGVVREMNWFLDTLLGYVMTDVIDVEFRRMKALLlG-RpavplgrqmtgsgsggvheslsaaslgtkptsavhptqstisnlasqgtpT 567
                     333.37**********************************74.346********************99999999999888887777776655543 PP

  GCP_C_terminal 192 tdldelieaHeafLdsilkkclLrskkkllklleeilelileFakvldglylsvselt..................................... 249
                      d+ +l+  H+++L+++l+  lL+++ +l ++++ ile++ +Fa  +++  +  + l                                      
      CDO73075.1 568 LDFTTLRIIHTTYLERLLTGSLLSNP-ALTHIIRMILEVCERFAAQVER--WGGDVLPallfegslaaagaqkvgdmvaeryaivgeidevhpls 659
                     39************************.******************9999..7766655788******************************9999 PP

  GCP_C_terminal 250 ................................aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqeede.................. 294
                                                      + +++++ ++  +++l++                         +                  
      CDO73075.1 660 firenahnlhpylqalqtlldafyeqlslsttLQPFSATAAADATKSMLHNT------------------------Smanttgfhtfirgkrgkk 730
                     8765444444444444444444444444444322222222222233333333........................0333334444444444444 PP

  GCP_C_terminal 295 .........dlrqLllrLdfne 307
                              ++++LllrLdfn+
      CDO73075.1 731 ldgdeevrrHVERLLLRLDFNG 752
                     444556677************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5465.28
//
Query:       CDO73076.1  [L=486]
Description: hypothetical protein BN946_scf185007.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-80  270.8   0.2    1.9e-80  270.3   0.2    1.3  1  HMGL-like  HMGL-like
  ------ inclusion threshold ------
      0.041   14.4   0.1      0.083   13.4   0.1    1.4  1  FliG_N     FliG N-terminal domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.3   0.2   2.1e-84   1.9e-80       2     264 .]      79     338 ..      78     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: 270.3 bits;  conditional E-value: 2.1e-84
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES- CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiats 100
                 +ki+++tLR+Geq+++a ++++ k+aiakaLd++gv++iE++ paase+++ ++++i+k + ka+il+++r++++d + ave    +g++ v+v+i ts
  CDO73076.1  79 FKIIESTLREGEQFANAFFDTKTKIAIAKALDAFGVEYIELTSPAASEQSRRDCEEICKLGLKAKILTHIRCHMDDARIAVE----TGVDGVDVVIGTS 173
                 79********************************************************************************....************* PP

                 HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEEB CS
   HMGL-like 101 elhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervkdkvilsvHcH 199
                  + ++ +++kd++++ k a e++++++s+g++v++s ed+ r+dl +l+ ++++++ +G++r+ iaDtvG+++P+++++l+++l+ +v+  ++++vH H
  CDO73076.1 174 SFLREFSHGKDMAYITKTAIEVINYVKSKGIEVRFSSEDSFRSDLVDLLSIYQTVDRIGVNRVGIADTVGCANPRQVYDLVRTLRGVVS--CDIEVHLH 270
                 *****************************************************************************************..******** PP

                 -TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT...-B----HHHHHHHHHHH CS
   HMGL-like 200 ndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg...vdtgldlqklrsiaalv 264
                 nd+G+A+an++ A+eaGa+++d++v+G+Ger G ++l  lva l+a++   v+++++l  lr+i++lv
  CDO73076.1 271 NDTGMAIANAYCALEAGATHIDTSVLGIGERVGITPLGGLVACLYAANpeyVKSKYNLPMLREIENLV 338
                 **********************************************999****************998 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.3e-06     0.083      26      82 ..     412     470 ..     404     476 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-06
                 TSXHHHHHHHHHHH...HCHTTXXHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHH CS
      FliG_N  26 hLdeeeiekltkei...aslksvskeeveaVleefleeleaqeylseggeeyarelLeka 82 
                 +L++ee++++t++i   a +++ s ++v+ +l+ +++ +++  +l+ g++e+  +lL+k+
  CDO73076.1 412 KLTDEEVKDVTAKIkelADVRTQSMDDVDTLLRVYHSGIQSG-ELAVGQKEALDRLLRKH 470
                 799********99944455556666689999********988.67777788888899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3219.01
//
Query:       CDO73077.1  [L=295]
Description: hypothetical protein BN946_scf185007.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-60  202.5   0.2    4.3e-60  202.1   0.2    1.1  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.1   0.2   2.4e-64   4.3e-60       1     159 [.      47     228 ..      47     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 202.1 bits;  conditional E-value: 2.4e-64
                      EEEEE-TTCSEEEEEETTT...........TEEEEEEE-SSSB-BSSEEEEETT--BT.......CCBEETSSSEEEEEESSS---TTEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkee...........gklrldrvlftskgypanYGfipqTled.......telkGDgDPlDvlvlgeeplspgevvevk 76 
                      +vvE+pr++naK+ei+kee           g+lr++r++f+++gy++nYG++pqT+ed       t++kGD+DPlDv+++ge+  ++g+v++vk
       CDO73077.1  47 MVVEVPRWTNAKMEISKEEpfnpikqdvkkGRLRYVRNCFPHHGYIWNYGAFPQTWEDptqthpeTKAKGDNDPLDVCEIGEQVGYVGQVKQVK 140
                      8********************************************************************************9999********* PP

                      EEEEEEEEETTEEEEEEEEEETTSGGGTT-SSGGG....STHHHHHHHHHHHHHTTTTSCCT-SE.EEE.EEEEHHHHHHHHHHHHHHH CS
  Pyrophosphatase  77 vlGvlamiDegetDdKiiavpvkdprlkkindied....lpgllleeiehfFetykdlegkkknv.kve.ewkdkeeAekvieeahery 159
                      vlG++a++DegetD+K+i+++v+dp  +++ndied    lpgl+ ++++++F+ yk+++gk +n+ +++ e k+k++A ++i+e+he++
       CDO73077.1 141 VLGIMALLDEGETDWKVIVIDVRDPLASRMNDIEDverqLPGLI-RATNEWFRIYKIPDGKPENNfAFSgEAKNKKYATEIIHECHEAW 228
                      *************************77********999999998.***************966555**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.52
# Mc/sec: 1718.37
//
Query:       CDO73078.1  [L=1310]
Description: hypothetical protein BN946_scf185007.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   14.7   0.1        1.2    9.2   0.0    3.5  5  I-set            Immunoglobulin I-set domain
      0.025   14.1   0.0       0.17   11.5   0.0    2.3  2  GalKase_gal_bdg  Galactokinase galactose-binding signature
        2.4    8.6   4.3        4.8    7.6   4.3    1.4  1  PBP1_TM          Transmembrane domain of transglycosylase PBP


Domain annotation for each model (and alignments):
>> I-set  Immunoglobulin I-set domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00021       1.2      14      43 ..     352     382 ..     344     404 .. 0.82
   2 ?   -2.6   0.1      0.99   5.9e+03      21      36 ..     583     600 ..     583     603 .. 0.73
   3 ?   -2.7   0.0       1.1   6.4e+03      63      88 ..     651     676 ..     618     677 .. 0.76
   4 ?   -3.3   0.0       1.7     1e+04       8      42 ..     810     844 ..     807     874 .. 0.65
   5 ?    0.2   0.0      0.14   8.1e+02      11      44 ..    1225    1258 ..    1220    1279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
                 TTS-EEEEEEEECSSS-EEEEEET.TCB-ST CS
       I-set  14 eGesvelectveGepepsvsWakd.gselks 43 
                  Ge+++le+++ G+p++s +W+++ gs  +s
  CDO73078.1 352 AGEELRLEIDIYGVPPLSLRWTRQvGSRHES 382
                 79*********************98877665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.99
                 EEEEECS..SS-EEEEEE CS
       I-set  21 ectveGe..pepsvsWak 36 
                 +c+v +   p+ +++W+k
  CDO73078.1 583 TCKVVERplPTAEIEWKK 600
                 699999833555799987 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                 B-GGGGEEEEEEEEETSEEEEEEEEE CS
       I-set  63 vevsDeGkYtckatnsagkaeakaeL 88 
                 v+++ +G Yt k t  +  + +k+ L
  CDO73078.1 651 VQPERSGHYTFKFTQLSDANYKKIDL 676
                 67778888888877776666666655 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.7
                 CEEEEETTS-EEEEEEEECSSS-EEEEEETTCB-S CS
       I-set   8 kdvevseGesvelectveGepepsvsWakdgselk 42 
                 ++v++   e++ l  + +Ge++ +++  +++ + +
  CDO73078.1 810 RQVTILDHEKAILPLRLTGEGPWRIKYRRQEAPQH 844
                 67778888888888899999888888887765543 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.14
                  EEETTS-EEEEEEEECSSS-EEEEEETTCB-STS CS
       I-set   11 evseGesvelectveGepepsvsWakdgselkss 44  
                   ++eG+++e+  t  Gep+ +++ ++ + + ++ 
  CDO73078.1 1225 DIHEGDQAEIVFTLIGEPPFTFTYQRAELSPRKG 1258
                  689****************999887776655554 PP

>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.17      11      35 ..     553     579 ..     541     581 .. 0.80
   2 ?   -1.5   0.0      0.32   1.9e+03      28      38 ..    1138    1148 ..    1138    1150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                      -..EEEEEEEEEEEE--S-TTTT-EEE CS
  GalKase_gal_bdg  11 p..fvasAPGRvnLiGEHtDYngGfVl 35 
                      +  + asAPG   +iG H  +++G Vl
       CDO73078.1 553 DmtLRASAPGEYTIIGVHGQFCEGDVL 579
                      355889********************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
                       TTTT-EEEEEE CS
  GalKase_gal_bdg   28 DYngGfVlpmA 38  
                       DY+ G V+p+ 
       CDO73078.1 1138 DYCVGDVIPFQ 1148
                       9********86 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.3    0.0008       4.8      28      60 ..     253     281 ..     238     289 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0008
     PBP1_TM  28 rrrrdddyddeyddeedDdddddeeeevprkgk 60 
                  +++ d+yd+ ydd   Dddd++++ +++ +g 
  CDO73078.1 253 AKKEPDEYDE-YDD---DDDDEEDHTQLTTHGT 281
                 3456677777.333...3334444455565554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 8641.63
//
Query:       CDO73079.1  [L=1596]
Description: hypothetical protein BN946_scf185007.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-36  123.5   0.0      2e-29  102.5   0.0    2.3  2  AMP-binding    AMP-binding enzyme
      2e-12   47.2   0.2    4.5e-12   46.1   0.2    1.6  1  PP-binding     Phosphopantetheine attachment site
    1.4e-07   32.4   0.3      0.013   16.4   0.0    2.9  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
    4.3e-07   29.4   7.1      0.036   13.8   0.0    6.5  7  Hexapep        Bacterial transferase hexapeptide (six repeats
  ------ inclusion threshold ------
       0.13   12.1   2.4        2.4    8.0   0.2    3.6  4  Hexapep_2      Hexapeptide repeat of succinyl-transferase
       0.47    9.8   2.8       0.74    9.2   2.8    1.2  1  DUF4618        Domain of unknown function (DUF4618)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-07   0.00056      37     124 ..      76     161 ..      43     193 .. 0.77
   2 !  102.5   0.0   6.7e-33     2e-29     218     421 ..     220     418 ..     215     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-07
                  HHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCC.HHHHHHHHSCC-EECEEE CS
  AMP-binding  37 agLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdsel.leklleaaakleavklvi 124
                  +gL+   +++ drV+++lp+spe  va+l i ++  +++p+n++ ta el+   +  +ak+++ t+ ++    +l++ +++l+   + i
   CDO73079.1  76 SGLQD-HLGPNDRVMVVLPTSPENAVAILSISSY-HTCAPVNSGCTAGELRDDARRLRAKAIL-TTTDAVdRLELRALRDELRCEVIFI 161
                  78986.699**********************998.689*************************.3333333556666666554443333 PP

  == domain 2  score: 102.5 bits;  conditional E-value: 6.7e-33
                  HHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEE CS
  AMP-binding 218 ilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegY 315
                  + +l+++++sG++ +++p+++ +  + ++  + + ++t  +++P++ +a+l+s++++  + + +  ++r++  +++ l p+l++++ ++fg  vl +Y
   CDO73079.1 220 VRNLWAPIFSGGSAIMCPGFDST--A-FWPIVMACGATWYYAAPTMHHAILASKPES-IVPS-RDTHIRMIANAAGGLLPSLATQLWETFGAVVLPSY 312
                  5789***************9983..3.4588888******************76666.2333.3356***999************************* PP

                  EEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTS.CBEETTSEEEEEEEETTS-SEBTT-H..HHHHHHEEETCCEEEEEEEEEEETTSEE CS
  AMP-binding 316 GlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetg.epvpdgeeGellvrgpgvmkgYlkkp..eataeafdsegrwlrTGDlgrldedGyl 410
                  G+TE+ ++++ +p+    +++g +  + +g  + i D+ ++ +++p+g +G + vrg  ++ gY   p   +  +af  +++w+ +GD+g++d+dGyl
   CDO73079.1 313 GMTECMPIAS-PPTTYALERPG-CSGIACGPYLSIRDPFNLeRELPRGATGAVSVRGLPTFDGYETGPdgPLDTSAFS-SEGWFDSGDVGYMDADGYL 407
                  *********9.99888888888.655669********98751578********************9873345777887.447**************** PP

                  EEEEECCCEEE CS
  AMP-binding 411 eivgRkkdlik 421
                  +i+gR+k++i+
   CDO73079.1 408 YITGRSKEIIN 418
                  *********96 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.2   1.5e-15   4.5e-12       2      66 ..     653     717 ..     652     718 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.5e-15
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66 
                 ++r++vae+l+v++ +i+ d+d+f lG++Sll+ +l++ +++e gv++ +  +f+++t++ +a +
  CDO73079.1 653 TIRDIVAELLDVDPVSITGDSDFFLLGGNSLLLGRLAHLIRKETGVTVRVPSIFTNSTVNGIASL 717
                 599**********************************************************9976 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.4e-06     0.013       1      76 []     428     506 ..     428     506 .. 0.90
   2 !   13.1   0.1     5e-05      0.15       2      68 ..     559     620 ..     558     628 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.4e-06
                    HHHHHHHSSTT..EEEEEEE-----TTS---EEEEEE---.---HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpa..VaeaaVvGvpdevkGealvafVvlkdg.sealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E+a+vs+ +  V+   ++ vp++v  e++ ++Vv+ +g ++    eL + ++++l p + p  +v  d+lpk+  GK
     CDO73079.1 428 EIEEAIVSVAKsrVRSTIAFSVPHDVLQETIGVVVVPVPGgPRIGLPELLDLLNSQLHPSKWPFVIVYMDDLPKNSAGK 506
                    89****9998888***********************976643334479******************************9 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5e-05
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvde 68 
                    +E a++s  +V+e+aV   +++ + ealva+     +     +++++ +++ l+ ya p  +++  e
     CDO73079.1 559 IERAIASINGVDEVAVR-LRHDGTPEALVAVRSA--DL--DSHTIVQALADVLPGYAIPTPLHVFRE 620
                    9****************.7777455777777665..32..24*****************98885544 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.021        62       2      15 ..     898     911 ..     897     914 .. 0.47
   2 ?    0.8   0.0      0.15   4.4e+02       4      20 ..     920     941 ..     918     941 .. 0.72
   3 !    5.5   0.1    0.0049        15       2      24 ..     947     969 ..     946     977 .. 0.77
   4 ?    2.5   0.0     0.045   1.4e+02      21      34 ..    1162    1175 ..    1161    1177 .. 0.87
   5 !   13.8   0.0   1.2e-05     0.036       2      32 ..    1186    1216 ..    1185    1217 .. 0.95
   6 ?   -3.4   0.0       3.2   9.6e+03      13      24 ..    1348    1359 ..    1346    1360 .. 0.77
   7 ?   -0.6   0.1      0.43   1.3e+03      19      28 ..    1413    1422 ..    1413    1429 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.021
                 EEEETTEEE-TTEE CS
     Hexapep   2 tvIGsnvlIgpfav 15 
                 ++IG +v I++ a+
  CDO73079.1 898 AKIGRDVRIDSRAK 911
                 44555555554444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
                 EETTEEE-T.....TEEEETTE CS
     Hexapep   4 IGsnvlIgp.....faviggnV 20 
                 +++++ I++     f+v ++++
  CDO73079.1 920 LHDGCRIDNalvrgFCVERDGC 941
                 6788888876666688887776 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0049
                 EEEETTEEE-TTEEEETTEEE-T CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGd 24 
                 +vIG ++++  +++++++++I d
  CDO73079.1 947 IVIGRGATVNTYTQVAPGAVIPD 969
                 57888888888888888888855 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.045
                  EE-TTEEEETTEEE CS
     Hexapep   21 kIGdnvkIgagvvi 34  
                  +IGd+v+ g+ + i
  CDO73079.1 1162 EIGDDVVFGSRSEI 1175
                  69*******99887 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 1.2e-05
                  EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep    2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32  
                  +vIG +++I   +v+++ + +G++++ g+g+
  CDO73079.1 1186 VVIGHGAMIADRVVLLPETRVGKRTVMGSGA 1216
                  79***************************98 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 3.2
                  TEEEETTEEE-T CS
     Hexapep   13 faviggnVkIGd 24  
                  ++v+   ++IG+
  CDO73079.1 1348 WVVLTKWAVIGR 1359
                  578888889998 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.43
                  TEEE-TTEEE CS
     Hexapep   19 nVkIGdnvkI 28  
                  ++kIG+++ I
  CDO73079.1 1413 GAKIGKDCAI 1422
                  4566666655 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       4.4   1.3e+04       3      10 ..     899     906 ..     897     910 .. 0.57
   2 ?    8.0   0.2   0.00081       2.4       4      26 ..    1163    1194 ..    1161    1201 .. 0.80
   3 ?   -3.6   0.0       3.4     1e+04       2      14 ..    1204    1216 ..    1204    1216 .. 0.79
   4 ?    1.4   0.1     0.093   2.8e+02       3      24 ..    1415    1443 ..    1413    1446 .. 0.64

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.4
                 EE-TT-EE CS
   Hexapep_2   3 iIGdnCli 10 
                 +IG ++ i
  CDO73079.1 899 KIGRDVRI 906
                 45555554 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00081
                  E-TT-EE-TT-EE......S...EEE-TT-EE CS
   Hexapep_2    4 IGdnCliGanagi......G...vslGdncvv 26  
                  IGd++++G++++i      G   v +G ++ +
  CDO73079.1 1163 IGDDVVFGSRSEIfttdglGsgkVVIGHGAMI 1194
                  ************98888553568888888766 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.4
                  EEE-TT-EE-TT- CS
   Hexapep_2    2 viIGdnCliGana 14  
                  +++G++++ G+ a
  CDO73079.1 1204 TRVGKRTVMGSGA 1216
                  5799999999875 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.093
                  EE-TT-EE-TT-EES.......EEE-TT- CS
   Hexapep_2    3 iIGdnCliGanagiG.......vslGdnc 24  
                  +IG++C i a   iG       v+lGd++
  CDO73079.1 1415 KIGKDCAIFAGGRIGlmtepdlVELGDRV 1443
                  79999988555556555555666666665 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.8   0.00025      0.74      42     108 ..    1521    1587 ..    1516    1592 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00025
     DUF4618   42 klLqqyeklktvisileksskkqleqakaeLqeweekeekklekLeqqleqlnakvqklqeelnvLs 108 
                  + L++++ ++ +++i   s  ++l++++ +L+e +  +++kle+ e++l++ +++++ + +  +vL+
  CDO73079.1 1521 TYLRKKSSYQVLSAIHYGSYYSNLQKMHLKLEEEKRILDQKLEHHERELREAKRRLEAMLQTTEVLR 1587
                  57999999**99999999*****************************************99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 9923.86
//
Query:       CDO73080.1  [L=176]
Description: hypothetical protein BN946_scf185007.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-25   88.3   0.0    3.5e-25   88.0   0.0    1.1  1  Thioredoxin    Thioredoxin
    1.3e-07   32.0   0.2    4.6e-07   30.3   0.2    1.8  1  Thioredoxin_2  Thioredoxin-like domain
    2.2e-05   24.2   0.0    2.9e-05   23.9   0.0    1.1  1  Thioredoxin_9  Thioredoxin
    0.00016   22.0   0.0      0.022   15.1   0.0    2.1  2  Thioredoxin_8  Thioredoxin-like
    0.00046   20.1   0.1    0.00073   19.5   0.1    1.4  1  AhpC-TSA       AhpC/TSA family
    0.00067   19.1   0.0    0.00083   18.8   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
      0.015   15.5   0.3      0.038   14.2   0.3    1.7  1  Thioredoxin_7  Thioredoxin-like
      0.017   15.0   0.0      0.027   14.4   0.0    1.3  1  DUF2847        Protein of unknown function (DUF2847)
      0.028   14.2   0.0      0.036   13.9   0.0    1.1  1  TraF           F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   1.8e-28   3.5e-25      10      93 ..      12      95 ..       3     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.8e-28
                 HHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-H CS
  Thioredoxin 10 Feeevak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegare 93
                  +  ++k ++kl +++F A+wCg+C ++aP++e+la+++  +v ++k+dvd+ +d+a+ky v+++Pt++++k   ev+++ ga++
   CDO73080.1 12 LDGILSKsKDKLSVIDFHATWCGPCHMIAPTYEALAKQYP-NVNFLKCDVDQAKDVATKYRVTAMPTFVFLKGASEVERIRGANK 95
                 5566666568999***************************.*****************************************986 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.2   2.3e-10   4.6e-07       3     102 ..      19      96 ..      17     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.3e-10
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpG 98 
                    ++ k  +++f++++C+ C+ +  + + l   +++       p++++   ++++ak++             a ky+v+++Pt+vfl g  +v+r++G
     CDO73080.1  19 SKDKLSVIDFHATWCGPCHMIAPTYEAL--AKQY-------PNVNFLKCDVDQAKDV-------------ATKYRVTAMPTFVFLKGASEVERIRG 92 
                    5678899****************99999..5555.......7777888888888877.............69****************999***** PP

  Thioredoxin_2  99 yvpa 102
                    + ++
     CDO73080.1  93 ANKP 96 
                    9765 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.4e-08   2.9e-05      35     107 ..      15      84 ..       3      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.4e-08
                    HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT CS
  Thioredoxin_9  35 kiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildee 107
                     +++ ++kl+++ + + wCg + ++ P  +++a++ pn+++     d+ +++  +y+     a Pt+++l+ +
     CDO73080.1  15 ILSKSKDKLSVIDFHATWCGPCHMIAPTYEALAKQYPNVNFLKCDVDQAKDVATKYRV---TAMPTFVFLKGA 84 
                    6778899999999*******************************************66...9*******9765 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.022       2      44 ..      22      61 ..      21      65 .. 0.83
   2 !    7.8   0.0    0.0021       4.2      60      92 ..      52      84 ..      43      87 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsld 44
                   k+ ++ f+a+wc pc  + p+  +l +++    +v+++   +d
     CDO73080.1 22 KLSVIDFHATWCGPCHMIAPTYEALAKQYP---NVNFLKCDVD 61
                   77899************************6...7777655555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
                   TSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8 60 pwlsvpfddkkrnklkkkynvkaiPtlvvldkn 92
                   +  ++  d ++ + ++ ky+v+a+Pt+v l+  
     CDO73080.1 52 NVNFLKCDVDQAKDVATKYRVTAMPTFVFLKGA 84
                   333444444567899*************99865 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   3.6e-07   0.00073      20      75 ..      16      68 ..       6     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.6e-07
                CHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHH CS
    AhpC-TSA 20 lsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkk 75
                ls+ k+k  v+ f+++ wc +C   +p +++l++++   +v+ + + vd+ ++++ 
  CDO73080.1 16 LSKSKDKLSVIDFHAT-WCGPCHMIAPTYEALAKQYP--NVNFLKCDVDQAKDVAT 68
                778899**********.*******************9..99999999998887665 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.2e-07   0.00083      38     107 ..      29      86 ..       5     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.2e-07
   OST3_OST6  38 TatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkg 107
                  at     C +C+ ++p +e++ak++ +          F k d+d++kdv  k++++  P +++ + +++
  CDO73080.1  29 HAT----WCGPCHMIAPTYEALAKQYPNV--------NFLKCDVDQAKDVATKYRVTAMPTFVFLKGASE 86 
                 444....5****************99887........4*************************9988654 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   1.9e-05     0.038      21      81 ..      25      81 ..      16      83 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
                   EEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7 21 lvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafl 81
                    ++f+a+wc++C+ ++ + +     ++    ++ +l+ dv++ ++   +++ +  P+++fl
     CDO73080.1 25 VIDFHATWCGPCHMIAPTYEAL---AK-QYPNVNFLKCDVDQAKDVATKYRVTAMPTFVFL 81
                   68***********998877665...22.247888888888888885522222458888887 PP

>> DUF2847  Protein of unknown function (DUF2847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.3e-05     0.027       3      66 ..       6      68 ..       4      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
     DUF2847  3 leteeqleeileeskekpvlifKhstrcsiSaealkelekeleeeeeevkvylldviesrevSn 66
                +++ +ql+ il++sk+k  +i  h t c+  ++   ++e+ +++ ++ v++   dv ++++v  
  CDO73080.1  6 VDNAAQLDGILSKSKDKLSVIDFHATWCGPCHMIAPTYEALAKQYPN-VNFLKCDVDQAKDVAT 68
                57889*****************************************8.9999999999998865 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.8e-05     0.036     116     199 ..       8      81 ..       1      89 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
        TraF 116 rkeekeaalkklakeygLlfFyrgkcpyceaqapilqafadky.glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlv 199
                 + ++ + +l+k +++   + F++  c+ c++ ap+++a+a++y +   +  +vd+  +  ++          ++ v+ +P++v+ 
  CDO73080.1   8 NAAQLDGILSKSKDKLSVIDFHATWCGPCHMIAPTYEALAKQYpNVNFLKCDVDQAKD--VAT---------KYRVTAMPTFVFL 81 
                 56677889***********************************777777777777755..666.........8888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1237.45
//
Query:       CDO73081.1  [L=107]
Description: hypothetical protein BN946_scf185007.g135 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-07   29.9   0.0      6e-07   29.6   0.0    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
      7e-05   22.9   0.1    9.9e-05   22.4   0.1    1.4  1  TAF            TATA box binding protein associated factor (TA
    0.00015   22.0   0.0     0.0002   21.7   0.0    1.3  1  CENP-S         CENP-S protein
     0.0011   19.2   0.1      0.002   18.4   0.1    1.6  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0021   18.4   0.2     0.0025   18.2   0.2    1.3  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.066   13.3   0.0      0.077   13.1   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     2e-10     6e-07      19      79 ..      40     100 ..      21     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2e-10
    CENP-T_C  19 rfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79 
                 r   ++g  ++++   ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +kr ++
  CDO73081.1  40 RRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGR 100
                 3333445667888888899999999********************************9875 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   3.3e-08   9.9e-05       9      66 .]      39      96 ..      30      96 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.3e-08
                HHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  9 vkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                ++ +A   G++ +s    ++    +++ l +++++++ +++h+kR++ t+ Dv +AL+
  CDO73081.1 39 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 96
                5555555555555555555555556677899*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.6e-08    0.0002      37      73 ..      54      98 ..      25     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 6.6e-08
      CENP-S 37 lvykq........lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                l+y++        len+ +D  ++ +HAkR+t+t+ Dv+  ++r+
  CDO73081.1 54 LIYEEtrgvlkifLENVIRDSVTYTEHAKRKTVTALDVVYALKRS 98
                555555555555589999*********************999886 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.7e-07     0.002      31      65 .]      61      95 ..      32      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.7e-07
                   HHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 31 ecveefieelaseAaeickkekrKtikaehiklAv 65
                    +++ f+e + + ++ +++++krKt++a ++  A+
     CDO73081.1 61 GVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYAL 95
                   57889*************************98886 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   8.2e-07    0.0025      95     129 ..      62      96 ..      21      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.2e-07
                 HHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  95 alEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +l+ +l+ +  ++  +++haKR+T+t+ D+  A++
  CDO73081.1  62 VLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALK 96 
                 67899*************************99987 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.077      37      69 ..      65      97 ..      36     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
  TFIID-31kDa 37 rytssvLedAkvlaehakkkevslddvrlAiqs 69
                  +  +v++d+ ++ ehak+k+v++ dv  A++ 
   CDO73081.1 65 IFLENVIRDSVTYTEHAKRKTVTALDVVYALKR 97
                 57889**********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 770.46
//
Query:       CDO73082.1  [L=391]
Description: hypothetical protein BN946_scf185007.g136 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-17   61.0   0.0    4.3e-08   33.0   0.0    4.5  4  Kelch_4   Galactose oxidase, central domain
    2.5e-09   37.2   9.8      0.013   15.8   0.0    6.2  6  Kelch_3   Galactose oxidase, central domain
    8.2e-09   35.3   5.3      0.031   14.3   0.0    5.0  5  Kelch_5   Kelch motif
    6.1e-05   23.1   1.2       0.21   11.9   0.0    4.0  4  Kelch_6   Kelch motif
    0.00012   21.9   0.1        1.8    8.7   0.0    3.9  3  Kelch_2   Kelch motif
     0.0002   20.9   0.0     0.0009   18.8   0.0    2.2  2  Kelch_1   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.6e-05     0.076       1      28 [.      95     122 ..      95     124 .. 0.87
   2 !   33.0   0.0   1.5e-11   4.3e-08       2      48 ..     165     209 ..     164     210 .. 0.94
   3 ?    0.0   0.0      0.29   8.7e+02      31      46 ..     249     264 ..     214     271 .. 0.70
   4 !    8.3   0.0   0.00075       2.2      10      32 ..     364     386 ..     355     390 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg.tll 28 
                 pR+g+++++  ++ +y++GGrg++  t+l
  CDO73082.1  95 PRVGAATVWH-KDALYMWGGRGGPEmTPL 122
                 8*********.79*********9943655 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 1.5e-11
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWrrlgslP 48 
                 R +h+a++  d+++y++ G+ + g +l+ l++++l+   W++l+s P
  CDO73082.1 165 RSYHTAVAY-DNKLYIHAGCPATG-RLSTLHAFNLKELMWETLSSGP 209
                 99*******.69**********95.******************9998 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.29
     Kelch_4  31 lylldlstntWrrlgs 46 
                 ++++ ++  +W+++ +
  CDO73082.1 249 VDVYFIAEDKWWTVQP 264
                 4566689999999844 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.00075
     Kelch_4  10 ipdgtiylfGGrgedgtllndly 32 
                 ++d +++lfGG  + +t++++l+
  CDO73082.1 364 NGDTRVILFGGLLSSNTRSDELW 386
                 3778********9999*****99 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        40      14      46 ..      56     101 ..      48     102 .. 0.75
   2 !    6.4   0.1    0.0039        12      30      49 .]     149     173 ..     105     173 .. 0.81
   3 !   15.8   0.0   4.2e-06     0.013       1      48 [.     174     219 ..     174     220 .. 0.94
   4 ?    1.8   0.0      0.11   3.2e+02       7      45 ..     234     280 ..     228     284 .. 0.55
   5 ?   -0.3   0.2      0.46   1.4e+03       4      41 ..     296     352 ..     293     358 .. 0.57
   6 !    9.1   0.0   0.00055       1.6       4      26 ..     369     390 ..     367     391 .] 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
     Kelch_3  14 gqdrlndvyvydldtn...tWa..........eiaslppaRaghaa 46 
                 +  + ++++v+d + +   +W+          +  s p +R+g+a+
  CDO73082.1  56 HAAPIGALHVIDMNEGlprNWDlfypasgpalSHRSIPAPRVGAAT 101
                 455558999999999999999988776655433388999*****97 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0039
     Kelch_3  30 tWaei.....aslppaRaghaatai 49 
                  W++i     ++ p  R++h+a+a+
  CDO73082.1 149 VWERIaasneDQAPETRSYHTAVAY 173
                 699997777777799*******986 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 4.2e-06
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaeiaslppaRaghaata 48 
                 +++lyi+ G+    + rl+++++++l    W++++s p + +g ++ +
  CDO73082.1 174 DNKLYIHAGCP--ATGRLSTLHAFNLKELMWETLSSGPEPGRGGTCLV 219
                 599********..9****************************999876 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.11
     Kelch_3   7 fGGlgd...dgqdrlndvyvydldtn.tWaei.asl....ppaRagha 45 
                 +GG+++   + ++++ dvy +  d++ t+ +  a++    p++R+ h 
  CDO73082.1 234 YGGFCGhelPDTPGVVDVYFIAEDKWwTV-QPaADPvhgsPGPRSVHG 280
                 67777433333444444444455555244.444664444499999886 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.46
     Kelch_3   4 lyifGGlgd.......dgqdrlndvyvy..dl......dtntWaei....aslppaR 41 
                 ++++ G++d       + + +  dv+++  d+      + + W+++    +s p +R
  CDO73082.1 296 AVLYHGERDasklghaGAGSFWDDVWLLtkDPghedplSGWGWRKVdiggGSAPEGR 352
                 567777777555543333444477887766553333334448887766666666655 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.00055
     Kelch_3   4 lyifGGlgddgqdrlndvyvydl 26 
                 + +fGGl  ++++r+ +++++ +
  CDO73082.1 369 VILFGGLL-SSNTRSDELWELTI 390
                 789*****.99********9976 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     1e-05     0.031       1      31 [.      92     122 ..      92     123 .. 0.91
   2 !   10.2   0.0   0.00019      0.57       2      22 ..     162     182 ..     161     183 .. 0.93
   3 ?    0.3   0.1      0.25   7.6e+02       3      23 ..     211     237 ..     208     243 .. 0.73
   4 ?   -0.3   0.2      0.38   1.1e+03      29      38 ..     315     324 ..     273     326 .. 0.73
   5 !    8.0   0.0   0.00098       2.9       2      39 ..     349     390 ..     348     391 .] 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvs 31 
                 iP+pR g+++v +++ +Y++GG++g+++ + 
  CDO73082.1  92 IPAPRVGAATVWHKDALYMWGGRGGPEMTPL 122
                 7***********************9887765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00019
     Kelch_5   2 PppRaghcavtvsekiYvyGG 22 
                 P+ R++h av++++k+Y++ G
  CDO73082.1 162 PETRSYHTAVAYDNKLYIHAG 182
                 889***************977 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.25
     Kelch_5   3 ppRaghcavtv.....sekiYv.yGGk 23 
                 p+R g c v+      s  +++ yGG+
  CDO73082.1 211 PGRGGTCLVATaipgsSKDVLLrYGGF 237
                 459999999754666456677779997 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.38
     Kelch_5  29 svsddvyvLd 38 
                 s+ ddv+ L+
  CDO73082.1 315 SFWDDVWLLT 324
                 3338999887 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.00098
     Kelch_5   2 PppRaghcavtv.....sekiYvyGGkvgrdgsvsddvyvLdl 39 
                 P++R  + ++ +     ++ ++++GG  + ++  sd+++ L++
  CDO73082.1 349 PEGRGWFPSASWvgpngDTRVILFGGLLS-SNTRSDELWELTI 390
                 77788888887666655589********7.8888******986 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0054        16       2      27 ..      96     126 ..      95     132 .. 0.72
   2 !   11.9   0.0     7e-05      0.21       2      45 ..     165     207 ..     164     213 .. 0.80
   3 ?   -3.0   0.0       3.7   1.1e+04      38      46 ..     257     265 ..     251     268 .. 0.78
   4 ?    0.7   0.0      0.24   7.1e+02      11      31 ..     364     386 ..     353     388 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0054
     Kelch_6   2 raghslvsvggkiYifGGytds.....spyl 27 
                 r+g ++v + + +Y++GG++++     +py+
  CDO73082.1  96 RVGAATVWHKDALYMWGGRGGPemtplDPYQ 126
                 556666668899********99666665555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7e-05
     Kelch_6   2 raghslvsvggkiYif..GGytdsspylnkvwvydpetksWeqlpp 45 
                 r +h++v++++k+Yi   + +t+   +l+ ++ ++++   We+l++
  CDO73082.1 165 RSYHTAVAYDNKLYIHagCPATG---RLSTLHAFNLKELMWETLSS 207
                 89*********877762255555...99999999999999999975 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.7
     Kelch_6  38 ksWeqlppl 46 
                 ++W++++p 
  CDO73082.1 257 DKWWTVQPA 265
                 689999885 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.24
     Kelch_6  11 gg..kiYifGGytdsspylnkvw 31 
                 +g  ++ +fGG+  s+++++ +w
  CDO73082.1 364 NGdtRVILFGGLLSSNTRSDELW 386
                 544589*****988877777776 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0016       4.9       1      33 [.      95     128 ..      95     133 .. 0.78
   2 !    8.7   0.0    0.0006       1.8       2      47 ..     165     207 ..     164     209 .. 0.82
   3 ?    0.8   0.0      0.18   5.5e+02      11      33 ..     366     386 ..     354     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
     Kelch_2   1 rrgghsssvpggkiyvvGGa.htdnpnlsssdvh 33 
                 +r+g +++   + +y++GG+ ++ +++l +  v 
  CDO73082.1  95 PRVGAATVWHKDALYMWGGRgGPEMTPLDPYQVG 128
                 68999999999*********77777766665555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0006
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevtp 47 
                 r+ h+++  ++k+y+  G          s++h ++l++  We ++ 
  CDO73082.1 165 RSYHTAVAYDNKLYIHAGC---PATGRLSTLHAFNLKELMWETLSS 207
                 899****************...444567778889999999998875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.18
     Kelch_2  11 ggkiyvvGGahtdnpnlsssdvh 33 
                 + +++++GG     +n  s+ ++
  CDO73082.1 366 DTRVILFGGL--LSSNTRSDELW 386
                 7899*****9..77776666666 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     3e-07    0.0009       2      44 ..     165     207 ..     164     209 .. 0.95
   2 ?   -2.9   0.0       1.8   5.5e+03      11      24 ..     366     380 ..     365     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3e-07
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEECC CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpetntWrelps 44 
                 r++++av+ ++k+Y+  G+    +ls++ ++++++  W+ l+s
  CDO73082.1 165 RSYHTAVAYDNKLYIHAGCPATGRLSTLHAFNLKELMWETLSS 207
                 9**********************************99999987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                 TTEEEEEEEBCS.SS CS
     Kelch_1  11 ggkiYviGGsdg.gn 24 
                 ++++  +GG  + ++
  CDO73082.1 366 DTRVILFGGLLSsNT 380
                 678899999877444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2652.35
//
Query:       CDO73083.1  [L=980]
Description: hypothetical protein BN946_scf185007.g137 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 6601.34
//
Query:       CDO73084.1  [L=497]
Description: hypothetical protein BN946_scf185007.g138 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-65  222.4   0.0    7.1e-57  193.4   0.0    2.1  2  COesterase     Carboxylesterase family
    0.00033   20.6   0.1    0.00063   19.7   0.1    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   0.0   7.9e-61   7.1e-57       2     260 ..      28     293 ..      27     297 .. 0.82
   2 !   26.9   0.0   2.4e-10   2.2e-06     372     496 ..     359     469 ..     295     475 .. 0.78

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 7.9e-61
                 SSEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE.----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSS. CS
  COesterase   2 spvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPep.aepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkek. 98 
                 s vv+t+ G  +G++      +  d +lGiP+AepPvg+lRFk+P++ ++  ++v +A +f++aCpq+ + s          +sEDCL+Ln    + + 
  CDO73084.1  28 SLVVRTTSGIFKGQSTG----NGTDRWLGIPFAEPPVGSLRFKAPVAiTKASSNVKNAFTFGNACPQAPSDSLGAP------ISEDCLFLNARRTSYRc 116
                 5799*********9999....4689**********************8888889**************98776655......9********99833335 PP

                 ................SSTTSSEEEEEEE--STTTS-BGCG..S-TH.HHHHHHTSEEEEE----HHHHH-B-SS.TTSBS-HHHHHHHHHHHHHHHHG CS
  COesterase  99 ................keakkklPVlVwihGggfqtgsase..ydgs.aLaaegnvivVtinYRlGvlGFlstgd.eeapGNvGllDqvlALrWVkenI 177
                                  ++ ++lPVlVw++Gg+f+ g as+  ++++  +           nYR++ +GFl+  +    + N+Gl Dq++AL +++en+
  CDO73084.1 117 pnfkftfstqvfrpsgINSAQNLPVLVWFYGGAFMNGAASDpeFNPTsDIHW-------HSNYRVNTFGFLASRHvPPEDLNAGLHDQQMALAFLQENV 208
                 55568999999999995666666****************9988555404444.......59************65589999****************** PP

                 GGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSH....HHHHHHHHHHHTTS-CSSHHHHHHHHHCS CS
  COesterase 178 asFGGdpervtlfGesAGaasvsllllsplsrglfkraIlqSGsalspwaiqkk....arkrakklakkvgckassskelveclrsk 260
                 a+FGGdpe+vt++G+sAGa sv++++l p s+  f+ aIl S++   ++a   +    +      l +k+gc++    e + cl++ 
  CDO73084.1 209 AAFGGDPEKVTIWGQSAGAGSVEAHILFPPSKPSFRAAILDSSTGPFKTAPPASryddPGFPYALLLEKTGCPEGP--ESFVCLQRV 293
                 ******************************************8743333322223336777777888888884433..446666665 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 2.4e-10
                 TCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHHS CS
  COesterase 372 ddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFaktg 470
                 ++ +++ ++ ++ +td ++  p + + ++  ++ +p Y+Y+f+       ++++ gv h++el ++fg            +++++++m ++  nF++  
  CDO73084.1 359 NTGDSLFDRAEAWYTDNMYLGPRRLFFDKA-ASTQPLYAYHFREFI--PGQDPTLGVFHASELILLFGAFPA-------VEQQFAEQMADFYINFINDL 447
                 55667778888999****************.999********9988..333479**************8655.......47799*************** PP

                 STTSTTSS----B.TTTBEEEEESSS CS
  COesterase 471 nPnkeeeekWpkytkeeekylkinlk 496
                 +P      +Wp++t+++++ l++ ++
  CDO73084.1 448 DPGA----PWPRFTPNSKNELQLMRD 469
                 **99....**********99998776 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1     7e-08   0.00063       1      83 [.     142     228 ..     142     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7e-08
                    EEEE--STTTS--TTTT.HHHHHHHHHHHTSEEEEEE-...--TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth.dalcrelakelgavvvsvdY...rlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGn 83 
                    lv+f GG+f+ g ++ +  +  +++  +++++v    +   r  P   + a ++d   al  l+e+ +++g dp+++++ G+SaG+ 
     CDO73084.1 142 LVWFYGGAFMNGAASDPeFNPTSDIHWHSNYRVNTFGFlasRHVPPEDLNAGLHDQQMALAFLQENVAAFGGDPEKVTIWGQSAGAG 228
                    699*******9999888678888999999999999888555777999999****************99*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3394.13
//
Query:       CDO73085.1  [L=464]
Description: hypothetical protein BN946_scf185007.g139 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-19   69.3   0.1    4.9e-19   68.8   0.1    1.2  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
        3.6    7.3   7.9        3.4    7.3   6.3    1.7  2  DUF2244        Integral membrane protein (DUF2244)
        3.9    7.7   6.9        2.5    8.3   4.5    1.9  2  DUF3099        Protein of unknown function (DUF3099)


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   8.2e-23   4.9e-19       1     233 []      11     299 ..      11     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 8.2e-23
                    EEEEESTG.....CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH....TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEE CS
                    xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngq.....aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal....ggflgasstsptgggggggnggavlsrfpltslf 87 
                    lt N++g      +     +  r +++a+ l+a+d Dv+ LQE++  + ++   ++ +    +    a      +  g+ g g++++srfp+ +  
     CDO73085.1  11 LTLNCWGLkyvskH-----RKERVAAIANFLAASDYDVITLQELWVFADFEYVRAAVAkrlpY----AKF----FYSGALGAGLVIFSRFPILAAT 93 
                    69999999766431.....3446777*****************99999999999998866442....333....2458****************** PP

                    EEEEEETSSSSGCEEEEEEEEEEEEEEE.....................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  88 rrtfiefndlvaalrreplaakleqlni.....................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsddds 162
                     + ++ ++ + + ++  ++++k                            +++ ++ +++l  ++++ ++++ +a+ g+ vi aGDfN++p++ + 
     CDO73085.1  94 IHAYSLNGSPIDVIAGDWFVGKAAASILfshpllgqvqvynthlfakggDEGAEYQKAHRLVNAWEFAKLARQSAELGRYVIAAGDFNSVPTSLPM 189
                    **********************999999******************************************************************** PP

                    SCGHHHHHHCTTTH............H..................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEEC... CS
                    xxxxxxxxxxxxxx............x..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
  Exo_endo_phos 163 rvlrtrglalapap............v..................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrr... 225
                      +r+++++++ ++            +                     +  g +     ++  g rlD+++++    +  + + p + ++  r   
     CDO73085.1 190 SIIRDHAGLTDAWAvthpdtpdpspsNmpsprdaihvhgvtadspLNSYSAGKRLEPLARKYQGKRLDYVFFRQPSSPPAAARTPVLRPVDTRvvl 285
                    **************777666666655055566666777889999*999999**********************95555555554444444444699 PP

                    ......TSSCSSSB CS
                    ......xxxxxxxx RF
  Exo_endo_phos 226 ......ealtlSDH 233
                           ++ +SDH
     CDO73085.1 286 tervpgANFSFSDH 299
                    99999999999999 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.61   3.7e+03      52      70 ..      30      48 ..      29      51 .. 0.83
   2 ?    7.3   6.3   0.00058       3.4       8      57 ..     376     425 ..     371     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.61
     DUF2244 52 afrvsarhardrEeitltd 70
                a  +++ +a d+++itl++
  CDO73085.1 30 AAIANFLAASDYDVITLQE 48
                55689999*******9986 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00058
     DUF2244   8 sprgflllllalalvslvialafllaGawpvlpFaglevlalalafrvsa 57 
                 ++ ++ ++ l++al+++vi    ++   w+ ++F+++++++ +la  + +
  CDO73085.1 376 GRYQLTIFALCIALLLAVIIGSAWFPRSWINPIFMVVTIALAWLATTMLY 425
                 56789999999**********************************98765 PP

>> DUF3099  Protein of unknown function (DUF3099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.3e+03      25      43 ..      84     103 ..      81     120 .. 0.77
   2 ?    8.3   4.5   0.00041       2.5      17      61 ..     375     421 ..     358     423 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
     DUF3099  25 giRvvclilavvlvsv.eng 43 
                 + R+++l + + ++s+  ++
  CDO73085.1  84 FSRFPILAATIHAYSLnGSP 103
                 57999999999998885554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00041
     DUF3099  17 qrrYlilmgiRvvclilavvlvsv..engwlalvllvlavvLPwvAV 61 
                 q rY ++ +   ++l+lav++ s+  +  w++ +++v+++ L w+A 
  CDO73085.1 375 QGRYQLTIFALCIALLLAVIIGSAwfPRSWINPIFMVVTIALAWLAT 421
                 568888888888889999888665577779***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3167.78
//
Query:       CDO73086.1  [L=693]
Description: hypothetical protein BN946_scf185007.g140 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-49  168.4   0.0    3.1e-49  167.7   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.3e-14   53.9   0.0    1.2e-13   50.6   0.0    1.9  2  Say1_Mug180    Steryl acetyl hydrolase
  ------ inclusion threshold ------
      0.042   13.1   0.0       0.08   12.2   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
       0.13   11.1   0.0          2    7.2   0.0    2.1  2  COesterase     Carboxylesterase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   6.9e-53   3.1e-49       1     210 [.     213     420 ..     213     421 .. 0.93

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 6.9e-53
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    ++y+HGG++++ s+++h+ +   lak l+a+ ++ dYrlAPe++fP +++da++a+  l++    l++  ++i++aGdSaGG l++a+++ +rd++
     CDO73086.1 213 VLYLHGGAYYTSSAASHRLITIPLAKYLDARLFALDYRLAPETRFPGPLHDAVSAYFRLVDD---LHIPSENIIVAGDSAGGGLSLALLMYLRDND 305
                    79***********************************************************9...9*****************************9 PP

                    ---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS...GGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHH CS
  Abhydrolase_3  97 epkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp...eadrddplaspllaedlsglpptlvvvaefDplrdegeayaer 189
                     p ++g +l++P++dl + + es++++++++  p+ ++ +    + +yl+   e+ +++p+aspl++ d++glpp+l++ +e ++lrde   +a++
     CDO73086.1 306 YPLPSGAILMSPWVDL-TMSCESWESNAQYDIVPMPQPGDHLNPIACYLGehmEKYLTHPYASPLFG-DFKGLPPMLIQAGEVEVLRDEITLLAHK 399
                    99**************.8889999666555444554455555678999944799*************.**************************** PP

                    HHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 190 lraagvevelieyegmvHgfa 210
                     + agvev+++ ye+mvH+f+
     CDO73086.1 400 AALAGVEVRHELYEDMVHVFQ 420
                    *******************96 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   2.8e-17   1.2e-13     109     241 ..     194     325 ..     180     341 .. 0.79
   2 ?    0.7   0.0     0.041   1.8e+02     305     329 ..     379     403 ..     377     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 2.8e-17
  Say1_Mug180 109 wlrkv..petfdPkvD.pvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvk..skgfknvvvlG 201
                  w+++       +Pk+  +v+lylHGG +          +   l k+++   +  +DY +       + +p  + +++  y  lv    +   n++v G
   CDO73086.1 194 WKARKegKLSGKPKTKeRVVLYLHGGAYYTSSAASHRLITIPLAKYLD-ARLFALDYRLAP----ETRFPGPLHDAVSAYFRLVDdlHIPSENIIVAG 286
                  555443233458998779*********998887777666677888887.457889***988....789**********99988862245679****** PP

  Say1_Mug180 202 dSaGGnlvLslllklsklnkvvlPkkaiaiSPWlnltild 241
                  dSaGG l L ll++l++ n   lP +ai++SPW++lt+  
   CDO73086.1 287 DSAGGGLSLALLMYLRD-NDYPLPSGAILMSPWVDLTMSC 325
                  *****************.8889**************9533 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.041
  Say1_Mug180 305 llityGddEilkdqikllidkisel 329
                  +li  G+ E+l+d+i ll++k + +
   CDO73086.1 379 MLIQAGEVEVLRDEITLLAHKAALA 403
                  68999**************997754 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.08      73     116 ..     277     324 ..     260     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
  Hydrolase_4  73 hpelplfllGhSmGGliallyl...lrypdkva.glilsaPalkikak 116
                   p +++++ G S GG ++l++l    ++   +  g+il++P++++  +
   CDO73086.1 277 IPSENIIVAGDSAGGGLSLALLmylRDNDYPLPsGAILMSPWVDLTMS 324
                  46779*************9999886444445555********998754 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00045         2     102     145 ..     207     252 ..     194     254 .. 0.81
   2 ?    1.5   0.0     0.023     1e+02     185     220 ..     280     317 ..     278     333 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00045
                 TSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----H CS
  COesterase 102 kkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlG 145
                 k+k  V+ ++hGg+++t sa +       La++ +  + ++ YRl 
  CDO73086.1 207 KTKERVVLYLHGGAYYTSSAAShrLITIPLAKYLDARLFALDYRLA 252
                 45557**************977556677889998988999999986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.023
                 EEEEEEEETHHHH.HHHHHHHSGGGT.TSBSEEEEES- CS
  COesterase 185 ervtlfGesAGaa.svsllllsplsr.glfkraIlqSG 220
                 e++ ++G+sAG+  s +ll+    +   l   aIl+S 
  CDO73086.1 280 ENIIVAGDSAGGGlSLALLMYLRDNDyPLPSGAILMSP 317
                 79********8752666666665555589999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4881.53
//
Query:       CDO73087.1  [L=422]
Description: hypothetical protein BN946_scf185007.g141 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-39  133.8   0.0    7.9e-39  133.5   0.0    1.1  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   4.4e-43   7.9e-39       2     208 ..     112     409 ..     111     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 4.4e-43
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHH...HHTT.TCEESSSSEEEEGGGGGSTTTBCS.SSB...--TTEEEEEEEEEEETTEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattl...krhg.arglafppivasgenaavlhytpn.drv...lkegdlvlidagaeydgya 89 
                    +ir+aa++++++++++ + ikpg++  ++a+ ie+ t+   +++g   g++fp  ++++ n+ ++hy+pn   +   l e+d++++d+g++++g +
     CDO73087.1 112 NIRRAAEVHRQVRRYARKYIKPGMRMIDIAETIENGTRalvEENGlECGIGFP--TGLSLNHVAAHYSPNpG-DtlvLGEKDVLKVDFGVHVKGRI 204
                    79********************************7655455555566778999..************99632.33469****************** PP

                    EEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEEEEE.ESSSTTCS CS
  Peptidase_M24  90 sDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhdegps.vsresndg 175
                     D+++T+++   +p ++ l+eav++a+e++i+++  +v+l+e+   ++e++es+++        +k++ ++ GH++   ++h++  s +  +++d+
     CDO73087.1 205 VDSAFTLSF---DPTYDPLLEAVKAATETGIREAGIDVRLGELAGYIQETMESYEVevngkvlpVKPIENLSGHSINPyQIHGG-KSvLLVKNDDQ 296
                    *********...8999*************************************966778888999************88***98.5524434679* PP

                    SB--TTBEEEEEE......EEEEETTT..................................................................... CS
  Peptidase_M24 176 rkleeGmvftiEp......giyfapge..................................................................... 196
                    +k+eeG+ f+iE+      g + ++ge                                                                     
     CDO73087.1 297 TKMEEGEYFAIETfgstgrGKVIEQGEcshyarivdaphvplrltsaksllnsinknfgtlpfcrrylerageskyllalnhlvaqgilqdypplc 392
                    *************8777553332234477777777888888888999999999999999999999999999999999999**************** PP

                    ....E.EEEEBEEEEEE CS
  Peptidase_M24 197 ....g.gvriedtvlvt 208
                        + ++++e+t+l++
     CDO73087.1 393 dvrgSmTAQFEHTILLR 409
                    ***9669******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2870.23
//
Query:       CDO73088.1  [L=425]
Description: hypothetical protein BN946_scf185007.g142 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-36  124.3   0.0    7.1e-36  123.9   0.0    1.2  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
       0.43    9.2   5.1       0.79    8.3   5.1    1.3  1  Cnd2           Condensin complex subunit 2
       0.96    8.8   3.6        1.8    7.9   3.6    1.4  1  IMD            IRSp53/MIM homology domain
          1    9.2   4.3        3.1    7.6   4.2    1.8  2  Coilin_N       Coilin N-terminus


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.0   1.6e-39   7.1e-36       2     208 ..     112     412 ..     111     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 1.6e-39
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHH...HHTT.TCEESSSSEEEEGGGGGSTTTBCS.SSB...--TTEEEEEEEEEEETTEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattl...krhg.arglafppivasgenaavlhytpn.drv...lkegdlvlidagaeydgya 89 
                    +ir+aa++++++++++ + i+pg +  ++a+ ie+ ++   +++g   g++fp  ++++ n+ ++hy+pn   +   l e+d++++d+g++++g +
     CDO73088.1 112 NIRRAAEVHRQVRQYARKYIRPGLRMIDIAETIEDGVRalvEENGlESGIGFP--TGLSLNHVAAHYSPNpG-DtlvLGEKDVLKVDIGVHVQGHI 204
                    79********************************7745455556679999***..************99632.33469****************** PP

                    EEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEE..EEEESS.STT CS
  Peptidase_M24  90 sDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhde..gpsvsr.esn 173
                    +D+++T+++   +p ++ l+eav++a+e++++++  +v+l+e+   ++e++es+++        +k++  + GH++   ++h++  g sv++ +++
     CDO73088.1 205 CDSAFTLSF---DPTYDPLLEAVRAATETGVREAGIDVRLGELAGYIQETMESYEVevngktlpVKPIYGLSGHSIIPyQIHGGrhGKSVHSiRND 297
                    *********...8999*************************************96677888889899999*******88***88654444335678 PP

                    CSSB--TTBEEEEEE......EEEEETTT................................................................... CS
  Peptidase_M24 174 dgrkleeGmvftiEp......giyfapge................................................................... 196
                    d++k+eeG+ f+iE+      g + ++ge                                                                   
     CDO73088.1 298 DQTKMEEGEYFAIETfgstgrGKVIEQGEcshysraidvppvdlrlnsaksllksinknfgtlpfcrrylqrageknyllalnnlvaqgvlndhpp 393
                    9**************876655333233447777888888888999999999999999999999999999999999********************* PP

                    ......E.EEEEBEEEEEE CS
  Peptidase_M24 197 ......g.gvriedtvlvt 208
                          + ++++e+t+l++
     CDO73088.1 394 lcdvrgSmTAQFEHTILLR 412
                    *****966*******9986 PP

>> Cnd2  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.1   0.00018      0.79     167     210 ..      20      63 ..       9      69 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00018
        Cnd2 167 eedeeegdeeeeeeegedgeekkkkkkKkqrsseatlaksfesl 210
                 ee ee ++e + e++g+ ge+kkkkkkKk+ +++++ +++  ++
  CDO73088.1  20 EEVEEVEEEGDPENQGAGGEGKKKKKKKKKSKKKKMEQTEPPTI 63 
                 22233333444455677777776666666666666666555555 PP

>> IMD  IRSp53/MIM homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.6    0.0004       1.8     110     176 ..      32      98 ..      19     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHHHHHHHTTHCCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         IMD 110 EykkkraelkKkssellklqkKakkgkddlkvqldelledvndkyllleetvkeavrrAliEErrRf 176
                 E + ++ e kKk+   +k +kK+ +  ++    l +l  d n  +++l+e+  +  +r   EE+r  
  CDO73088.1  32 ENQGAGGEGKKKKKKKKKSKKKKMEQTEPPTIGLSKLFPDGNYPQGELQEYKDDNAYRTTSEEKRYN 98 
                 666677777888888899998888889999999*************************999999754 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.2   0.00068       3.1      84     124 ..      19      58 ..      11      67 .. 0.41
   2 ?   -2.4   0.0      0.87   3.9e+03      63      79 ..     182     198 ..     176     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00068
    Coilin_N  84 leaqesededsresasksasttkqkkkkKrekkqeeqdeqk 124
                 +e++e+++e+ +  ++    + k+kkkkK+++k+++  eq+
  CDO73088.1  19 EEEVEEVEEEGDPENQGAGGEGKKKKKKKKKSKKKK-MEQT 58 
                 333333222222222222333344444444443333.3333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.87
    Coilin_N  63 sirvlrdndcirVkleg 79 
                 ++ vl ++d+++V + +
  CDO73088.1 182 DTLVLGEKDVLKVDIGV 198
                 67799999999994333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1328  (0.0740699); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 2893.13
//
Query:       CDO73089.1  [L=311]
Description: hypothetical protein BN946_scf185007.g143 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-28   98.8   0.0    2.1e-27   96.3   0.0    2.1  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   1.1e-31   2.1e-27       1     200 []      52     306 ..      52     306 .. 0.79

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.1e-31
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.G.SS-EEEEEETTS-S-TTSH..... CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaea.rqpvrvVvdstlrvpldak..... 93 
                 pyv+l++a+SlD k+a  gg++  ++g e   ++h +r  +d+ilvG+gt l dnp+l+ r  +  +a +     r p+ +++d++lr+ +++k     
  CDO73089.1  52 PYVTLTFAQSLDAKIAGVGGKQLILSGNESLVMTHWMRTLHDGILVGIGTALNDNPQLNTRHLPPLPAGHPH-GyRLPRPIILDTHLRLSPECKllkny 149
                 8*********************************************************99998887663444.36*******************88887 PP

                 ..........HHHSS.S-EEEEESSCSCHHHHHHCC..................E...................SE-HHHHHHHHHHTT--EEEEEETH CS
      RibD_C  94 ..........vltdd.aptlvatteeadkekveklk..................v...................rvdlkelleeLkergirsllveGGa 144
                           v   + a++ va+t           +                                      r+ +++ll++L+e g+rsl+veGGa
  CDO73089.1 150 qagygrrpwvVCAPQrASSDVAST-----------EaftqraaalqaagakiieLecdaatemsespidndragRIAIPDLLAALRELGVRSLMVEGGA 237
                 777777776533333344444444...........2232333333356666555055556677788889999*************************** PP

                 HHHHHHHH............TTT-SEEEEEEESCE--TTSBCSSSSST-SS..EEEEEEEEEEETTEEEE CS
      RibD_C 145 tLagsllr............aglvDelrlyiaPkllGgagktlfdgegfka..lklklvksealgegvvl 200
                  +++s+l             ++ vD l++++aP+++G+ + +  + e +++  ++++ v++ ++g+++v+
  CDO73089.1 238 RVIRSFLHgarssaasgssgKKTVDALVVTVAPTVVGS-AGIGYGSELLTEelPTFQHVRTDVFGPDTVV 306
                 ******96444444444444689***************.7777777777778999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2131.00
//
Query:       CDO73090.1  [L=1052]
Description: hypothetical protein BN946_scf185007.g144 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   32.0   0.0    6.1e-07   29.9   0.0    1.9  2  RhoGEF    RhoGEF domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.083   1.5e+03       6      22 ..     700     716 ..     699     769 .. 0.77
   2 !   29.9   0.0   3.4e-11   6.1e-07     125     182 .]     979    1036 ..     963    1036 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.083
                 HHHHHHHHHHHHHHHHH CS
      RhoGEF   6 leTErsYvrdLkvlvev 22 
                 ++TEr+Y   L+  v+ 
  CDO73090.1 700 MTTERNYQARLREFVTT 716
                 58*********999864 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 3.4e-11
                  GGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  125 pecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182 
                  ++  k+  ++l i+P qR++rY+L  ++ll +tp+++p +  +++a e   ++a++++
  CDO73090.1  979 EHDVKMAVRDLAIQPTQRVMRYVLQYRDLLDHTPATSPSRALVERAYEIALRIAKKCD 1036
                  33468999*****************************************999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.48
# Mc/sec: 6578.06
//
Query:       CDO73091.1  [L=350]
Description: hypothetical protein BN946_scf185007.g145 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2470.89
//
Query:       CDO73092.1  [L=1607]
Description: hypothetical protein BN946_scf185007.g146 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-57  190.8  82.1    3.6e-12   45.9   9.1    6.3  6  ZZ          Zinc finger, ZZ type
    1.3e-30  106.1   0.0    3.1e-30  104.9   0.0    1.7  1  N_BRCA1_IG  Ig-like domain from next to BRCA1 gene
    5.3e-15   55.5  64.8    0.00036   20.8   2.3    6.6  6  C1_2        C1 domain


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   6.1   3.9e-13   2.3e-09       2      37 ..     577     612 ..     576     621 .. 0.89
   2 !   37.4   7.4   2.6e-13   1.6e-09       2      43 ..     651     693 ..     650     695 .. 0.92
   3 !   45.9   9.1     6e-16   3.6e-12       2      38 ..     733     770 ..     732     777 .. 0.88
   4 !   42.6   6.5   6.2e-15   3.7e-11       2      44 ..     832     874 ..     831     875 .. 0.95
   5 !   31.8   7.7   1.5e-11     9e-08       3      41 ..     926     964 ..     925     967 .. 0.90
   6 !   27.6   5.4   3.2e-10   1.9e-06       3      35 ..     989    1022 ..     988    1026 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.9e-13
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH CS
          ZZ   2 hkkytCdgCseapligvRyhclrcsdYDLCqsCfst 37 
                 h ++ Cd C +  + g Ry+cl c dYDLC  C  +
  CDO73092.1 577 HRGVRCDYCNKKNIKGIRYKCLECADYDLCEACMAS 612
                 7899*****************************877 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 2.6e-13
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H---S CS
          ZZ   2 hkkytCdgCseapligvRyhclrcsdYDLCqsCfst.hkagkh 43 
                 hk+ tC+ C    + g R +cl+c+dYDLC+ C s  +k + h
  CDO73092.1 651 HKGITCNACQTKNISGIRHKCLQCDDYDLCDVCISDvSKREMH 693
                 899******************************9997777666 PP

  == domain 3  score: 45.9 bits;  conditional E-value: 6e-16
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH.. CS
          ZZ   2 hkkytCdgCseapligvRyhclrcsdYDLCqsCfst.h 38 
                 h++++Cd+C +ap+igvR +cl c+dYDLC sC s   
  CDO73092.1 733 HNNVHCDECRQAPIIGVRHKCLDCDDYDLCTSCISDpD 770
                 99*******************************98754 PP

  == domain 4  score: 42.6 bits;  conditional E-value: 6.2e-15
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H---SS CS
          ZZ   2 hkkytCdgCseapligvRyhclrcsdYDLCqsCfst.hkagkhk 44 
                 hk+ +Cd+C + +++gvR +cl c+dYDLC  C  t h  ++h 
  CDO73092.1 832 HKNIICDICNQ-EIVGVRHKCLDCPDYDLCEACLRTpHLRAQHH 874
                 8999*******.**************************999995 PP

  == domain 5  score: 31.8 bits;  conditional E-value: 1.5e-11
                 S-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H-- CS
          ZZ   3 kkytCdgCseapligvRyhclrcsdYDLCqsCfst.hkag 41 
                 ++++Cd C +  + g R++cl c+dYDLCq C++  h ++
  CDO73092.1 926 HNASCDLCDS-RIRGDRFKCLDCPDYDLCQLCYKIvHDQH 964
                 6789******.9*********************9966665 PP

  == domain 6  score: 27.6 bits;  conditional E-value: 3.2e-10
                  S-EE-TTT-S..EESSEEEES..SSSS-EE-HHHH CS
          ZZ    3 kkytCdgCseapligvRyhcl..rcsdYDLCqsCf 35  
                  ++++C++C++  + gvRy+c+   c d+D+C sC+
  CDO73092.1  989 HNASCNTCGN-RITGVRYKCMyeTCLDFDMCESCE 1022
                  6789******.*********8557**********7 PP

>> N_BRCA1_IG  Ig-like domain from next to BRCA1 gene
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   5.1e-34   3.1e-30       1     102 []    1397    1499 ..    1397    1499 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 5.1e-34
  N_BRCA1_IG    1 tipdgtvvppgteftktWrlrNtGseaWpagtklvfvgGdkmgsasaeessvsvpavapgeevev.svelkaPskpgryisywrlatedgseFGdrl 96  
                  +ipdg+ +ppg+ef+k+Wr+rN+G+ +Wp++t++vfv+Gd+m  +     ++ v av+ geevev + e+kaP+ pg+y+s wrl++ +g+ FG+++
  CDO73092.1 1397 NIPDGQIFPPGAEFVKSWRMRNNGEIDWPENTEVVFVAGDRMAPGGGAPLKYHVGAVKVGEEVEVlAGEMKAPEVPGKYVSSWRLSDGNGNLFGHSI 1493
                  79****************************************85333447899************777***************************** PP

  N_BRCA1_IG   97 wvdieV 102 
                  wvdi V
  CDO73092.1 1494 WVDIIV 1499
                  ****98 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   9.0   5.6e-06     0.033      15      47 .]     576     610 ..     566     610 .. 0.85
   2 !   10.5   7.9   9.8e-05      0.59      15      47 .]     650     684 ..     636     684 .. 0.88
   3 !   11.2   1.8     6e-05      0.36      15      47 .]     732     766 ..     715     766 .. 0.88
   4 !   14.7   2.3   4.7e-06     0.028       3      46 ..     800     863 ..     798     864 .. 0.78
   5 !   13.4   2.9   1.2e-05     0.072      17      46 ..     926     956 ..     904     957 .. 0.91
   6 !   20.8   2.3     6e-08   0.00036      17      46 ..     989    1021 ..     964    1022 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.6e-06
        C1_2  15 ssesfnCsaCgrk.idgffYsCseC.dfslhvrCa 47 
                  +   +C+ C +k i+g +Y+C eC d+ l++ C+
  CDO73092.1 576 LHRGVRCDYCNKKnIKGIRYKCLECaDYDLCEACM 610
                 456689*******************99*******5 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.8e-05
        C1_2  15 ssesfnCsaCgrk.idgffYsCseC.dfslhvrCa 47 
                  ++  +C+aC++k i+g + +C +C d+ l+  C+
  CDO73092.1 650 VHKGITCNACQTKnISGIRHKCLQCdDYDLCDVCI 684
                 566789********99*********66*******6 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 6e-05
        C1_2  15 ssesfnCsaCgrk.idgffYsCseC.dfslhvrCa 47 
                 ++++ +C+ C++  i g + +C  C d+ l+ +C+
  CDO73092.1 732 QHNNVHCDECRQApIIGVRHKCLDCdDYDLCTSCI 766
                 678899*******977*********66*******6 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 4.7e-06
        C1_2   3 HpHpLtls...................kgedssesfnCsaCgrkidgffYsCseC.dfslhvrC 46 
                 H+HpL                           +++  C++C ++i g + +C  C d+ l++ C
  CDO73092.1 800 HNHPLFGRrrqqdpqrdgdgdaerphaPTLLVHKNIICDICNQEIVGVRHKCLDCpDYDLCEAC 863
                 6666666666666666666666666666667888999*******99*********9******** PP

  == domain 5  score: 13.4 bits;  conditional E-value: 1.2e-05
        C1_2  17 esfnCsaCgrkidgffYsCseC.dfslhvrC 46 
                  + +C++C+  i g++++C  C d+ l++ C
  CDO73092.1 926 HNASCDLCDSRIRGDRFKCLDCpDYDLCQLC 956
                 5679******************9*****999 PP

  == domain 6  score: 20.8 bits;  conditional E-value: 6e-08
        C1_2   17 esfnCsaCgrkidgffYsCse..C.dfslhvrC 46  
                   + +C++Cg+ i+g +Y+C    C df ++++C
  CDO73092.1  989 HNASCNTCGNRITGVRYKCMYetClDFDMCESC 1021
                  5689***************7689********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 10195.19
//
Query:       CDO73093.1  [L=436]
Description: hypothetical protein BN946_scf185007.g147 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-26   92.0   0.2    1.4e-25   90.3   0.2    1.7  1  FAD_binding_3   FAD binding domain
    6.4e-07   29.5   2.4    1.6e-06   28.2   2.4    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.6e-05   23.6   1.4    3.9e-05   23.0   0.7    1.5  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00044   20.0   5.7     0.0008   19.1   5.2    1.7  2  DAO             FAD dependent oxidoreductase
    0.00068   18.5   3.2    0.00095   18.0   3.2    1.1  1  HI0933_like     HI0933-like protein
    0.00069   18.9   1.0     0.0013   18.1   1.0    1.3  1  Thi4            Thi4 family
      0.001   19.6   1.8     0.0022   18.5   1.8    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0014   17.8   4.6     0.0026   16.9   4.6    1.4  1  FAD_binding_2   FAD binding domain
     0.0028   17.0   1.1     0.0042   16.4   1.1    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0046   15.9   1.3     0.0071   15.2   1.3    1.2  1  Trp_halogenase  Tryptophan halogenase
     0.0056   16.0   0.6      0.093   12.0   0.1    2.1  2  Amino_oxidase   Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.011   14.9   2.3      0.015   14.4   2.3    1.2  1  GIDA            Glucose inhibited division protein A
      0.015   14.4   0.0      0.029   13.4   0.0    1.4  1  SE              Squalene epoxidase
      0.029   14.3   1.2        2.3    8.2   0.5    3.2  3  NAD_binding_9   FAD-NAD(P)-binding
       0.18   10.8   0.8       0.45    9.5   0.8    1.6  1  Lycopene_cycl   Lycopene cyclase protein
        0.2   11.5   1.2        0.4   10.5   1.2    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.33   10.3   5.3       0.57    9.5   5.3    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
        1.6    8.0   3.4        3.8    6.8   3.1    1.8  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.2   1.4e-28   1.4e-25       2     349 .]       9     374 ..       8     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.4e-28
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEE.EEEEECCCCCEEEEEHHCHHCS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmge.alynelsdtpkaradlelessp 96 
                     +V+IVG+G +Gl+ a  L++aGv+v+l e      + + + g+ +  +++l+++G+ d+il+++   +l +  + y +  ++ ++ra ++  +  
     CDO73093.1   9 FEVAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAFGEIGAGIGVGPNAVRVLKDIGVLDTILQKTGEGDLRARgFIYRP--GVGEHRAVYT--TPV 100
                    68************************************************************99877776554155555..6677777777..777 PP

                    T-CEE--HHHHHHHHHHHHHHHT..EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHH..TGG.EEEEEEEEEEEE CS
  FAD_binding_3  97 ervtvypqteleriLvehaeerg..lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktl..gie.fegeetvyeagv 187
                    ++ ++ +  +   + ++++++    +  +f+++ +s+++   + + ++++  +g++   + + + GaDG +S vrk +  g+e + ++++++  + 
     CDO73093.1 101 NESEDRGIGMHRAVFLDALVSVVdpTVSHFNKRCVSVTESPANPDRVLLSFLDGTT--HETDVVLGADGIKSSVRKYVlgGTEdRLAFSNTVAYRA 194
                    77777777777777778777754448889********************9999987..67899*************98544555555555543333 PP

                    E..EEEEEC.-SCCCTTC.....CEEEEECCTTEE......EEEECCETEEEEEEEEEC..CE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE..EE CS
  FAD_binding_3 188 l..dvlfda.dlsdivep.....lvlilsaesrgv......mviPlentlerfyvqvea..raekeersekfteeevkarlreivgektldv..ei 265
                    l   +  +a  ++    +     +++++ ++  +v      +++ +  ++ r+ + + a   ++ + + e++++eevk++++    +  +     +
     CDO73093.1 195 LipYAALKAaGFK---TGlveapVCFLGPSKHLIVfpikndEIVNVVAFSARYDIPIGAvkLPDGAAWVEQVSREEVKREYEGWGPDVSILIdnMP 287
                    3112222222333...2255567777776666655666666444444433444444443114567788************9986655544332267 PP

                    EEEEEEEEE..EEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-.GGGGHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 266 eevsawtva..qrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAk.eelLdtYeeerravaqavvdfa 349
                    e+ s+w ++  +   e+y k+rv l GDAaH + P  G G   +i+Da+ La+ L +  + + + +++L+ Y++ r+++aq v d++
     CDO73093.1 288 EKPSKWSIHvvHPPLESYVKDRVALLGDAAHGMLPHLGAGAGQGIEDAYLLARLLSHPQTHTDNiKDVLQVYSQVRKPRAQMVWDRS 374
                    777788666115679******************************************9985543389**************999875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   2.4   1.6e-09   1.6e-06       1      32 [.      13      44 ..      13      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.6e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   IvG+G+ Gl++A +L+kag++v l+e+++ +G
     CDO73093.1 13 IVGGGVCGLTCAVALQKAGVSVRLFEAAPAFG 44
                   9***************************9988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.7   3.9e-08   3.9e-05     144     178 ..      10      44 ..       3      65 .. 0.85
   2 ?   -3.2   0.0       3.9   3.9e+03     206     240 ..     137     171 ..     134     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.9e-08
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll 178
                   +++vGgG++G+ +A al k+g+ v l ea++ + 
   CDO73093.1  10 EVAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAFG 44 
                  589***************************99986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.9
                  EEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 206 vkeidgngeklevvledgeeidadlvvvavGvrps 240
                  v+e  +n++++ +   dg++ ++d v+ a G++ s
   CDO73093.1 137 VTESPANPDRVLLSFLDGTTHETDVVLGADGIKSS 171
                  67777777767788889999999999999998876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   5.2     8e-07    0.0008       2      34 ..      11      45 ..      10      52 .. 0.89
   2 ?   -3.0   0.0       4.1   4.1e+03      42      76 ..     400     432 ..     399     433 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags 34
                v+i+GGG+ Gl++A +L+++g  V l+e+++ +g+
  CDO73093.1 11 VAIVGGGVCGLTCAVALQKAGvsVRLFEAAPAFGE 45
                9****************999**********77774 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.1
                 EEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHS CS
         DAO  42 gllhsglrylpeaselarlslealeelreleeelg 76 
                 g++hs +r+ p+  ++ + + ++l+e+ ++ + +g
  CDO73093.1 400 GMFHSVWRHDPNR-DF-EAAVQSLRERGAFPQING 432
                 8999*99978865.55.999999999988877766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   3.2   9.6e-07   0.00095       2      37 ..      10      45 ..       9      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.6e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +v+++GgG  Gl +A++++k+g +V l+e+a+++g+
   CDO73093.1 10 EVAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAFGE 45
                 79*****************************99996 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.0   1.3e-06    0.0013      19      57 ..      10      48 ..       6      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T.TT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGG.Ga 57
                +v+ivG+G +GLt+a  l k+ ++ v ++e+  ++G  Ga
  CDO73093.1 10 EVAIVGGGVCGLTCAVALQKA-GVSVRLFEAAPAFGEiGA 48
                79******************9.*********999974222 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.8   2.2e-06    0.0022       2      35 ..      11      44 ..      10      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.2e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v++vGgG+ gl +A al++ g +V ++e+++ + 
  CDO73093.1 11 VAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAFG 44
                89***************************99887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   4.6   2.6e-06    0.0026       2      35 ..      11      44 ..      10      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   v ++G+G+ GL++A+++++aG +v + e +++fg
     CDO73093.1 11 VAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAFG 44
                   89**************************999876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.1   4.2e-06    0.0042       2      28 ..      13      38 ..      12      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-06
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilE 28
                 I+G+G +Gl++a++l+kag+ ++   E
   CDO73093.1 13 IVGGGVCGLTCAVALQKAGV-SVRLFE 38
                 9******************9.566666 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.3   7.1e-06    0.0071       2      67 ..      11      73 ..      10      83 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.1e-06
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-.SSS---SS-EE--THHHHTHHHHT--HHHHCHHC CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlves.eeigtvgvGeatipsirkllrlLgideeeflret 67
                    + ivGGG  G + A al+ka+   ++v l e+ +++g +g G +  p+ + +l+ +g+ +   l++t
      CDO73093.1 11 VAIVGGGVCGLTCAVALQKAG---VSVRLFEAaPAFGEIGAGIGVGPNAVRVLKDIGVLDT-ILQKT 73
                    89*******************...9*****973699***************9999999876.56555 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   9.3e-05     0.093       2      27 ..      19      44 ..      18      44 .. 0.92
   2 ?    2.2   0.0      0.09        90     214     257 ..     117     163 ..      97     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.3e-05
                   HHHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEardrvG 27
                    GL++A  L+ aG++V ++Ea + +G
     CDO73093.1 19 CGLTCAVALQKAGVSVRLFEAAPAFG 44
                   7********************98776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.09
                    HHHHHTTTTEEEETSEEEEEEEE...ETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 214 ealaeelrgldirlntrVkeikr...egdgvtvtledgevveaDaVv 257
                    +al +   ++  ++n+r+ +++    ++d v + + dg++ e D V+
     CDO73093.1 117 DALVSVVDPTVSHFNKRCVSVTEspaNPDRVLLSFLDGTTHETDVVL 163
                    677777778888***********9999999**********9999885 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.3   1.5e-05     0.015       2      32 ..      11      43 ..      10      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE..ES-G CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi..thkl 32
                v ++GgG  G+ +A+a+ ++G++v L+  ++ +
  CDO73093.1 11 VAIVGGGVCGLTCAVALQKAGVSVRLFeaAPAF 43
                89************************9443333 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.9e-05     0.029     129     193 ..     307     369 ..     296     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
          SE 129 kkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldav 193
                 k  + llGDa     P  g+G   +++D++ll++ll+  +  + ++++ ++l+ +   Rk+ + +
  CDO73093.1 307 KDRVALLGDAAHGMLPHLGAGAGQGIEDAYLLARLLSHPQ--THTDNIKDVLQVYSQVRKPRAQM 369
                 456889******99**********************9884..55667899999999999987765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5    0.0023       2.3       1      37 [.      12      44 ..      12      50 .. 0.85
   2 ?    2.6   0.0      0.12   1.2e+02     104     152 ..     116     165 ..     107     168 .. 0.72
   3 ?   -1.3   0.0       1.9   1.9e+03       4      42 ..     329     371 ..     328     377 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep.g 37
                   aivG+G+ Gl+++ +L +       +++ lf+ +++ g
     CDO73093.1 12 AIVGGGVCGLTCAVALQKA-----GVSVRLFEAAPAfG 44
                   8*************99877.....69999999987734 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
  NAD_binding_9 104 feellarlpegvtvevhraevvdleeradgq.avll..adgaslaadaVvLA 152
                    +++l++ +    tv+++++++v+++e++++  +vll   dg++++ d V  A
     CDO73093.1 116 LDALVSVVD--PTVSHFNKRCVSVTESPANPdRVLLsfLDGTTHETDVVLGA 165
                    445554443..489************99874366663469999999988755 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.9
  NAD_binding_9   4 GaGprGlavlerLlara...kkkspleitlfdp.sepgagrvw 42 
                    G G+  +++l+rLl++     +  +  ++++ + ++p a++vw
     CDO73093.1 329 GQGIEDAYLLARLLSHPqthTDNIKDVLQVYSQvRKPRAQMVW 371
                    78888899999***99843222222334555555555556666 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.8   0.00045      0.45       2      35 ..      11      42 ..      10      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00045
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasps 35
                   v+++G+G  gl  A  l  +k+g++v l ea+p 
     CDO73093.1 11 VAIVGGGVCGLTCAVAL--QKAGVSVRLFEAAPA 42
                   89***************..***********9985 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2    0.0004       0.4       2      34 ..      11      43 ..      10      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0004
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                va++G G+ G   a ++ +ag++V+l++ ++++
  CDO73093.1 11 VAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAF 43
                9**************************998775 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.3   0.00057      0.57       1      35 [.      10      44 ..      10      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00057
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlG 35
                  +v +vGGg+ G+++A+a  +aG +v L e  +  G
    CDO73093.1 10 EVAIVGGGVCGLTCAVALQKAGVSVRLFEAAPAFG 44
                  599**************************998877 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.1    0.0038       3.8      30      62 ..      10      42 ..       4      61 .. 0.91
   2 ?   -2.6   0.1       2.8   2.8e+03      34      52 ..      46      65 ..      44      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0038
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                 +v ++GgGv Gl  + + ++ g +V++++  pa
   CDO73093.1 10 EVAIVGGGVCGLTCAVALQKAGVSVRLFEAAPA 42
                 799***********************9998776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
                 ESTSH.HHHHHHHHHHHTT- CS
  AlaDh_PNT_C 34 iGgGv.aGlqAiatakglga 52
                 iG+G+ +G +A+++ k +g 
   CDO73093.1 46 IGAGIgVGPNAVRVLKDIGV 65
                 8999989******9998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2907.87
//
Query:       CDO73094.1  [L=74]
Description: hypothetical protein BN946_scf185007.g148 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        2.9    6.5   8.9        3.3    6.3   8.9    1.0  1  Clostridium_P47  Clostridium P-47 protein
          4    7.3   6.1        4.8    7.1   6.1    1.1  1  TMEM154          TMEM154 protein family
        4.8    6.7  12.8        5.6    6.5  12.8    1.1  1  SseC             Secretion system effector C (SseC) like fami


Domain annotation for each model (and alignments):
>> Clostridium_P47  Clostridium P-47 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.9   0.00055       3.3     382     422 ..       3      45 ..       1      49 [. 0.62

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00055
  Clostridium_P47 382 svagavggkvkslvdki..iiaiivaiiagiivaiqeiiedvi 422
                      ++  a+gg ++++v +i  ii iiv+ i+++iv+i++ii d+i
       CDO73094.1   3 AIFSAIGGAINAVVSAIasIIMIIVSAIVTVIVTIFDIIFDII 45 
                      4445555555555555433455566666668999999998876 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.1    0.0008       4.8      56      84 ..      19      47 ..       9      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0008
     TMEM154 56 lelvlmiiiPlvllillllvviiliqkkk 84
                 + ++mii+ +++++++ +  ii+  +++
  CDO73094.1 19 IASIIMIIVSAIVTVIVTIFDIIFDIICC 47
                5679***************9999966776 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.8   0.00093       5.6      58      86 ..       4      32 ..       1      46 [. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00093
        SseC 58 iigkIfGwilaivsvvagalkvgasllla 86
                i+++I G+i a+vs +a++++++ s+  +
  CDO73094.1  4 IFSAIGGAINAVVSAIASIIMIIVSAIVT 32
                9**********************998762 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1451  (0.0809303); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 531.67
//
Query:       CDO73095.1  [L=223]
Description: hypothetical protein BN946_scf185007.g149 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-16   58.6   0.9    5.5e-16   58.6   0.9    2.7  3  V-SNARE_C     Snare region anchored in the vesicle membrane C
     0.0023   17.5   0.1       0.99    8.8   0.0    2.1  2  VP4_helical   Rotavirus VP4 helical domain
     0.0067   16.2   1.5        9.2    5.9   0.0    3.3  3  LXG           LXG domain of WXG superfamily
  ------ inclusion threshold ------
      0.018   14.9   1.1      0.041   13.8   0.8    1.9  1  CK2S          Casein Kinase 2 substrate
      0.031   14.0   4.6      0.064   13.0   2.8    2.0  2  Laminin_I     Laminin Domain I
      0.043   14.4   8.6        1.5    9.3   1.0    2.2  2  APG6_N        Apg6 coiled-coil region
      0.047   14.2   1.5       0.12   12.9   0.2    2.1  2  TipAS         TipAS antibiotic-recognition domain
      0.062   13.5   0.3        0.2   11.9   0.1    2.0  2  Med30         Mediator complex subunit 30
      0.081   13.1   0.4       0.13   12.4   0.4    1.3  1  DUF4040       Domain of unknown function (DUF4040)
      0.089   12.8   0.4        8.8    6.4   0.1    2.3  2  DUF1664       Protein of unknown function (DUF1664)
       0.13   12.3   3.6       0.28   11.2   0.5    2.6  3  Laminin_II    Laminin Domain II
       0.14   12.9   0.5        3.6    8.4   0.2    2.7  3  Occludin_ELL  Occludin homology domain
       0.21   11.5   2.5       0.56   10.1   0.3    2.3  3  Sec34         Sec34-like family
       0.27   11.5   4.1          4    7.7   0.1    3.3  3  WXG100        Proteins of 100 residues with WXG
       0.32   10.0   3.3         11    4.9   4.5    2.0  2  Atg14         Vacuolar sorting 38 and autophagy-related subun
       0.33   11.0   4.9        5.6    7.0   1.4    2.5  3  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
        1.7    7.9   6.2        2.7    7.2   5.9    1.5  1  CorA          CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.4   4.6e+03      30      41 ..       6      17 ..       4      32 .. 0.76
   2 ?   -0.3   0.1       1.3   1.3e+03      37      64 ..      61      90 ..      58      92 .. 0.57
   3 !   58.6   0.9   5.2e-19   5.5e-16       2      66 .]     136     200 ..     135     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.4
   V-SNARE_C 30 dLhsQretLkra 41
                +Lh+Q  tL++ 
  CDO73095.1  6 SLHRQCRTLESL 17
                699999999876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.3
   V-SNARE_C 37 tLkrarsklhnvanrl..gksnsiLrsikr 64
                +L+ +++ l+ +an+   + s+s Lr+i+r
  CDO73095.1 61 KLQEINDQLSALANDAenPPSQSMLRAIQR 90
                566666666665553322557777777766 PP

  == domain 3  score: 58.6 bits;  conditional E-value: 5.2e-19
   V-SNARE_C   2 rllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrRv 66 
                  ll e+ +++nSh+++de+++++++++ ++++Qr+t++++++++++v ++ + +n +L  ik+R+
  CDO73095.1 136 ALLSERGHIDNSHQMTDEMLAQAYETRAEFARQRSTISGINARMQGVLSSMPGINNLLGMIKTRR 200
                 68999*********************************************************996 PP

>> VP4_helical  Rotavirus VP4 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.003       3.2      82     132 ..      23      73 ..       8      79 .. 0.82
   2 !    8.8   0.0   0.00094      0.99      40     102 ..     112     173 ..      82     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.003
  VP4_helical  82 dslkdaaksisrgssirsigssasawtdvetvitdlsedvssvstqtstis 132
                   ++   a+si r       + s++ w d+e+ + +l+e++ +++ q s+++
   CDO73095.1  23 TAYARLASSITRNQDDVEASGSTARWRDLEIEVDELLEKLQEINDQLSALA 73 
                  4566779999998776667777889******************99999876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00094
  VP4_helical  40 pldlfsllesvkaiidavkdvaasvmkkfkksglansvstltdslkdaaksisrgssirsigs 102
                   ld  +ll++v+  ida k+ aa+ +   +   + ns     ++l +a +     +  rs  s
   CDO73095.1 112 ALDQANLLSGVRNDIDAYKSSAADALLSERG-HIDNSHQMTDEMLAQAYETRAEFARQRSTIS 173
                  68999*******************9988776.7888888888899888776655555555444 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4     0.032        34     149     177 ..      50      78 ..      35      84 .. 0.83
   2 ?    3.6   0.1     0.046        48      64     117 ..      82     135 ..      74     139 .. 0.85
   3 !    5.9   0.0    0.0087       9.2       6      38 ..     152     184 ..     150     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.032
         LXG 149 kakkkvqetiekledfdqeqksalanles 177
                 + + +v+e +ekl++++ +++++ +++e+
  CDO73095.1  50 DLEIEVDELLEKLQEINDQLSALANDAEN 78 
                 5667899999******9999999998876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.046
         LXG  64 tslqdlieqyeefLkkikealesvepssngfidedfLeqelenglkkakevtee 117
                 +s+  +i+   e + ++ ++l   +++ ++ +d++ L + + n+++  k++ ++
  CDO73095.1  82 QSMLRAIQRHREVYLDYARELRRTKSNVKAALDQANLLSGVRNDIDAYKSSAAD 135
                 566778888999999999999999999999999999999999999999998876 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0087
         LXG   6 aelieaieqlkseleelkeqleqlkkaiqklve 38 
                 +e+++++ +++ e+++++++++++++++q++++
  CDO73095.1 152 DEMLAQAYETRAEFARQRSTISGINARMQGVLS 184
                 589999************************765 PP

>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   3.9e-05     0.041      13      58 ..      45      93 ..      39     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
        CK2S 13 rekWkellseseslleslsnlaeqlqalqnvklygtp....lrdfpdlqe 58
                +++W++l+ e+ +lle+l  + +ql al n++ +  p    lr+++ ++e
  CDO73095.1 45 TARWRDLEIEVDELLEKLQEINDQLSALANDAEN-PPsqsmLRAIQRHRE 93
                789***************************9855.333555666665555 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.8     6e-05     0.064      80     161 ..      44     123 ..       4     136 .. 0.78
   2 ?    0.1   0.0      0.51   5.3e+02      14      44 ..     151     181 ..     146     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-05
   Laminin_I  80 tlnnakeLaekikkladnikeilekvatlneneealpssklseelaeaqrlLeelrsRdftkqleeaeaelkaAqkLLsrvq 161
                  + +  +L++++ +l ++++ei+ + ++l +++e++ps+ + ++ +          +R++   + ++ a l++A+ LLs v+
  CDO73095.1  44 STARWRDLEIEVDELLEKLQEINDQLSALANDAENPPSQSMLRAIQRHREVYLDY-ARELRRTKSNVKAALDQAN-LLSGVR 123
                 3456789*******************************99999999888877776.7999999999999999996.556555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.51
   Laminin_I  14 pykinanledltkeLqeklskesakkskiei 44 
                   +++a++++++ e+ +++s +s  + ++++
  CDO73095.1 151 TDEMLAQAYETRAEFARQRSTISGINARMQG 181
                 5789999999999999999988877666665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.1    0.0017       1.8      16     118 ..       9     112 ..       2     115 .. 0.67
   2 ?    9.3   1.0    0.0014       1.5      16     105 ..      83     169 ..      80     180 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaa..leeelealeeeeerfwreynelqlel 112
                 +q +++e+  d+ ++  ++l ++ + ++ +d e   +  + ++le e +elle+L+e+ ++ ++l+++ ++   ++ l+a+++  e ++   +el++++
  CDO73095.1   9 RQCRTLESLFDTKLTAYARLASSITRNQ-DDVEASGSTARWRDLEIEVDELLEKLQEINDQLSALANDAENppSQSMLRAIQRHREVYLDYARELRRTK 106
                 3333333333333334444444433322.566667777889************************9998874457778888888888888888888887 PP

      APG6_N 113 leleee 118
                 ++ +  
  CDO73095.1 107 SNVKAA 112
                 776655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeek...qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwrey 105
                 + l++ ++ r+ Y+++ ++l+++k++ ++   q + l   ++++++ ++         ++l +er  +++  +   e l++  e  ++f r++
  CDO73095.1  83 SMLRAIQRHREVYLDYARELRRTKSNVKAaldQANLLSGVRNDIDAYKSS------AADALLSERGHIDNSHQMTDEMLAQAYETRAEFARQR 169
                 568899*****************777553444333333333334444332......3334444445555555555555544444444444444 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00012      0.12      18      71 ..      44      96 ..      25     111 .. 0.84
   2 ?    0.1   0.1       1.1   1.1e+03      69      92 ..     143     165 ..     105     178 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
       TipAS 18 seekiaklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehralie 71
                s ++++ l+  +++el ++l+e++++l a+ ++ ++p s+ + +++++hr++  
  CDO73095.1 44 STARWRDLE-IEVDELLEKLQEINDQLSALANDAENPPSQSMLRAIQRHREVYL 96
                556666664.678999**********************************9765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS  69 lieefwgecskeilaglgqmYvad 92 
                 +i ++++ +++e+la   +  ++ 
  CDO73095.1 143 HIDNSHQ-MTDEMLAQAYETRAEF 165
                 3443344.6666554444433333 PP

>> Med30  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00019       0.2      68     131 ..       4      73 ..       2      79 .. 0.73
   2 ?   -1.9   0.0       3.3   3.4e+03     102     129 ..     130     157 ..     107     180 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
       Med30  68 Yekckencqgle......evpiesLipyvdeekskreerkkseevkqlkeerkelleklkeknkqLkeim 131
                 Y+ ++++c+ le       +    L      ++ + e++ ++   ++l+ e +ellekl+e n+qL  + 
  CDO73095.1   4 YDSLHRQCRTLEslfdtkLTAYARLASSITRNQDDVEASGSTARWRDLEIEVDELLEKLQEINDQLSALA 73 
                 666666666666433333444555555555666778888899999*********************9876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
       Med30 102 kseevkqlkeerkelleklkeknkqLke 129
                 ks+ +  l +er ++ +  ++ ++ L +
  CDO73095.1 130 KSSAADALLSERGHIDNSHQMTDEMLAQ 157
                 4555556666666665555555555444 PP

>> DUF4040  Domain of unknown function (DUF4040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00012      0.13       9      37 ..     194     222 ..     191     223 .] 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
     DUF4040   9 aavlardrlaavillgvvGllvallfvll 37 
                  ++ +r+r  avi+ +++Gl+++llf+++
  CDO73095.1 194 GMIKTRRRRDAVIVGCLIGLCMVLLFMYM 222
                 67899*********************986 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.026        28      53     107 ..      17      73 ..       4      90 .. 0.65
   2 ?    6.4   0.1    0.0083       8.8      46     120 ..     122     196 ..     100     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.026
     DUF1664  53 vseslaatkrhLssridrvdkkldeqkeis..keikeevtevredlseigedvesvk 107
                 + ++  ++  +L+s i r ++ ++++  ++  ++++ ev+e+ e+l+ei+++++++ 
  CDO73095.1  17 LFDTKLTAYARLASSITRNQDDVEASGSTArwRDLEIEVDELLEKLQEINDQLSALA 73 
                 455545555666666666666666654443115666777777777777777776655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0083
     DUF1664  46 vskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 v ++++  ++s a++      +id+  +  de+ + + e+++e ++ r+ +s i+  ++ v + + g+++ l  i
  CDO73095.1 122 VRNDIDAYKSSAADALLSERGHIDNSHQMTDEMLAQAYETRAEFARQRSTISGINARMQGVLSSMPGINNLLGMI 196
                 444444444444444444445688888889999999999999999999999999999998888777777766665 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00026      0.28      60      87 ..      47      74 ..       7     102 .. 0.67
   2 ?    0.1   0.1      0.72   7.6e+02      26     105 ..      88     115 ..      80     135 .. 0.59
   3 ?    0.2   0.0      0.66   6.9e+02       9      41 ..     148     180 ..     140     199 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
                XXXXX--TTTTTGGGHHHHHHHHHH... CS
  Laminin_II 60 svkkLeklapqLldklkelkqleeasss 87
                  ++Le ++++Ll+kl+e++ + +a ++
  CDO73095.1 47 RWRDLEIEVDELLEKLQEINDQLSALAN 74
                3578999999999999999988887554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.72
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHHH CS
  Laminin_II  26 lentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARka 105
                 +++ +e +   +r++++t+ +vk+a                                                     ++
  CDO73095.1  88 IQRHREVYLDYARELRRTKSNVKAAL----------------------------------------------------DQ 115
                 44444555555555555555555333....................................................33 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.66
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   9 netakevleqlaplsqnlentkeklseinrsve 41 
                  + + e l+q  +  ++  + ++ +s+in+ ++
  CDO73095.1 148 HQMTDEMLAQAYETRAEFARQRSTISGINARMQ 180
                 455555666666666666666666666665543 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.41   4.3e+02       8      39 ..       9      40 ..       4      50 .. 0.82
   2 ?    8.4   0.2    0.0034       3.6      26      71 ..      57     103 ..      46     131 .. 0.73
   3 ?   -1.4   0.0       3.9   4.1e+03      15      22 ..     163     170 ..     137     202 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.41
  Occludin_ELL  8 eqrerYkaeFnkeYkeYkelhaeleevskkfs 39
                  +q ++ +  F+++ + Y +l ++++  +++++
    CDO73095.1  9 RQCRTLESLFDTKLTAYARLASSITRNQDDVE 40
                  577777888999999***99999998887765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0034
  Occludin_ELL  26 elhaeleevskkfseLerelkelkegsk.eykkieeeilqeykklkk 71 
                   el ++l+e+++++s L ++ ++ + +s  +  ++++e++ +y++  +
    CDO73095.1  57 ELLEKLQEINDQLSALANDAENPPSQSMlRAIQRHREVYLDYARELR 103
                   67788888888888888888888888888777777777877765433 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.9
  Occludin_ELL  15 aeFnkeYk 22 
                   aeF ++ +
    CDO73095.1 163 AEFARQRS 170
                   23333333 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.9   3.1e+03      42      51 ..       6      15 ..       2      38 .. 0.54
   2 ?   10.1   0.3   0.00053      0.56      11      87 ..      54     132 ..      48     138 .. 0.85
   3 ?    0.6   0.0      0.45   4.7e+02       5      54 ..     137     186 ..     133     199 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.9
       Sec34 42 slheaceqll 51
                slh++c +l 
  CDO73095.1  6 SLHRQCRTLE 15
                4555555443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00053
       Sec34  11 ecdelleqtdealeqLeeleekfks..vsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss 87 
                 e+delle+++e+++qL+ l ++ ++   ++  ++++++ e  l+  ++l++++ ++++ L+  + l  + + +++ +ss
  CDO73095.1  54 EVDELLEKLQEINDQLSALANDAENppSQSMLRAIQRHREVYLDYARELRRTKSNVKAALDQANLLSGVRNDIDAYKSS 132
                 789******************9998334555699************************999888887777777776665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.45
       Sec34   5 LeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeq 54 
                 L s++ ++d+  + tde+l q  e + +f +  +  s ++++++ +l++ 
  CDO73095.1 137 LLSERGHIDNSHQMTDEMLAQAYETRAEFARQRSTISGINARMQGVLSSM 186
                 55666777777777777777777777777777777777777777666655 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0038         4      51      80 ..      46      75 ..      40      78 .. 0.86
   2 ?    0.9   0.1      0.53   5.6e+02      13      66 ..      99     154 ..      88     162 .. 0.55
   3 ?    2.6   0.1      0.16   1.7e+02      11      37 ..     160     186 ..     147     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0038
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 51 aefeewkqaaqklvdaLeeisealkqaana 80
                a +  +  ++++l ++L+ei+++l + an 
  CDO73095.1 46 ARWRDLEIEVDELLEKLQEINDQLSALAND 75
                6688888899***************99985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHH..HHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHH CS
      WXG100  13 aarfqkqaeeledelq..rlkaevdalqsgWsGaaadafqaefeewkqaaqklvda 66 
                 a+++++++++++++l+  +l + v +  ++++ +aada  +e   ++++ q   ++
  CDO73095.1  99 ARELRRTKSNVKAALDqaNLLSGVRNDIDAYKSSAADALLSERGHIDNSHQMTDEM 154
                 55555566666665552233344444445555566666555555555555544444 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      WXG100  11 qaaarfqkqaeeledelqrlkaevdal 37 
                 ++ a+f++q+++++++ +r+++ ++++
  CDO73095.1 160 ETRAEFARQRSTISGINARMQGVLSSM 186
                 456889999999999999999988877 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   4.5     0.011        11      54      98 ..      33      77 ..       4     177 .. 0.63
   2 ?    3.4   0.2     0.031        33      33     116 ..      97     202 ..      81     207 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
       Atg14 54 eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeie 98
                  +q++ ++  ++a++++l +++ +l e+lqe++d+ls l    e
  CDO73095.1 33 TRNQDDVEASGSTARWRDLEIEVDELLEKLQEINDQLSALANDAE 77
                4566888899999*************************9976554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.031
       Atg14  33 klksekeslkkkiekalegke....eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk............... 112
                 +   e    k+ +++al + +      ++ ++   + +++l + + +i  +++ + e+ ++ ++ ++e + ++ ++++ ++ +                
  CDO73095.1  97 DYARELRRTKSNVKAALDQANllsgVRNDIDAYKSSAADALLSERGHIDNSHQMTDEMLAQAYETRAEFARQRSTISGINARMQgvlssmpginnllgm 195
                 445555555566666666666333222333333444555666677788888888999999999999999999988888877776666666666666666 PP

       Atg14 113 ...kRrs 116
                    +Rr+
  CDO73095.1 196 iktRRRR 202
                 6655555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.7     0.036        38      53      84 ..      31      70 ..       6      82 .. 0.50
   2 ?    7.0   1.4    0.0053       5.6      17      93 ..      54     132 ..      44     146 .. 0.65
   3 ?    6.9   0.3    0.0056       5.9      26     108 ..     103     193 ..     100     199 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.036
  Baculo_PEP_C 53 dlksllaeldt........rldtlltnLtdalnalqdtlr 84
                  ++++   ++++        +l+  +++L ++l++++d+l+
    CDO73095.1 31 SITRNQDDVEAsgstarwrDLEIEVDELLEKLQEINDQLS 70
                  4444444444344444334444444444444444444432 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0053
  Baculo_PEP_C  17 dLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldt......................rldtlltnLtdalnalq..dtlrneLtn 89 
                   ++ ++L+ ++  n q+ ++la++ +                     +                      +l  + +n+++al + +    +rn++++
    CDO73095.1  54 EVDELLEKLQEINDQL-SALANDAE---------------------NppsqsmlraiqrhrevyldyarELRRTKSNVKAALDQANllSGVRNDIDA 128
                   4445555555555555.55555555.....................444444444444444444444449999999999999998888999999998 PP

  Baculo_PEP_C  90 lnsi 93 
                    +s 
    CDO73095.1 129 YKSS 132
                   8776 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0056
  Baculo_PEP_C  26 rlqnvqilaql..atlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq......dtlrneLtnlnsiltnLlssvtNinstL 108
                   r  ++++ a+l  a+ll  + + ++a +++  ++l + + ++d++ +  ++ l++           r+ + ++n+ +   lss+++in+ L
    CDO73095.1 103 RRTKSNVKAALdqANLLSGVRNDIDAYKSSAADALLSERGHIDNSHQMTDEMLAQAYetraefARQRSTISGINARMQGVLSSMPGINNLL 193
                   55666777777223457777777777777777777766777777777777777766655565556688999**************999866 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.9    0.0026       2.7     116     214 ..      51     157 ..      22     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0026
        CorA 116 ldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlk......rlla..kaddkllddedkeylrdlldelerlle 206
                 l+  vd+l+e l++++++l  l +  e+  ++++lr + + r+ +  + r l++++  +k      +ll+  ++d + +++ +++ l   + +++++++
  CDO73095.1  51 LEIEVDELLEKLQEINDQLSALANDAENPPSQSMLRAIQRHREVYLDYARELRRTKSNVKaaldqaNLLSgvRNDIDAYKSSAADALLSERGHIDNSHQ 149
                 566789999999999999999999999999999999999999776666444444444444222233333366688888888887888888888888888 PP

        CorA 207 mlealrer 214
                 m++ +  +
  CDO73095.1 150 MTDEMLAQ 157
                 87776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      758  (0.0422779); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 1524.47
//
Query:       CDO73096.1  [L=443]
Description: hypothetical protein BN946_scf185007.g150 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-22   78.6   0.0    8.3e-22   77.8   0.0    1.4  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   4.6e-26   8.3e-22       1     244 [.      50     390 ..      50     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.6e-26
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGC............................... CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevde............................... 68 
                 +D HcH++++e    ++ + + ++e+   +++ + t+  d++ v  la+ +p+kv++++G HP+  +                                
  CDO73096.1  50 VDVHCHPTDSE----AKMTHHVVAEGLPIRICAMATRRSDQELVAGLARAHPDKVVPCFGYHPWFYHWisltpapskeshyralflpsspppkpelvaa 144
                 7********44....55555778888899*************************************99******************************9 PP

                 ............C.CCHHHHHHHHHHCCCTSEEEEEEEEEET.....-CCCCCGH......................HHHHHHHHHHHHHHHHTTEEEE CS
  TatD_DNase  69 ............asedlleelkelanvkhskvvaiGeiGLDy.....ysreestk......................eaqeevFeeqlrlAkelklplv 128
                             +  dll+++++   + + + + +Ge+G+D      ysr  +++                      e+q +++e+ql+lA elk+ ++
  CDO73096.1 145 ferllpylpepiPLSDLLQDVRSR--LVQFPGAMLGEVGIDRvcripYSRPADPPyancadhedgssrelspftiplEHQLAILEAQLALAVELKRNVS 241
                 999999998877677777888777..8899999*********7777655554444888888899999******************************** PP

                 EEEES-HHHHHHHHHHCG.GCCS.....EEEETT.........................................--S-HHHHHHHHHTTEEEEE-GGG CS
  TatD_DNase 129 iHlrkaeedlleilkeaa.eaka.....kvvlHs.........................................fsgsaeeakkflklgyyislsgll 180
                 +H++k+++ + e+l++ + + +a     +v lHs                                         f+ s +        ++++sls ++
  CDO73096.1 242 LHSVKCQQATCELLDRMKtKHGAawlriSVDLHScglspqtwqqisvgrrpceqcpsraaleppnrtlivaridlFEPSQKRH-----PNVFLSLSTAI 335
                 *****99988888888764444477999999999**************************99999999664444444444333.....37789999999 PP

                 GTTTTHHHHHHHHHS-GGGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHH CS
  TatD_DNase 181 tfknakelrelvkavpldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelae 244
                 + ++   +r+l++a   dr+L+E+D   +++      r    +  +++ ++a++k++ +ee+ +
  CDO73096.1 336 NARS-PAHRALIAACAPDRILVESD---FHD-----VRLSAPYTWHMLCTVAAVKGWRVEEVWD 390
                 9976.4579999*************...333.....57888899999*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3013.87
//
Query:       CDO73097.1  [L=395]
Description: hypothetical protein BN946_scf185007.g151 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-47  161.9   0.0    2.8e-29  102.3   0.0    2.2  2  Met_10           Met-10+ like-protein
    0.00025   20.8   0.0     0.0004   20.1   0.0    1.2  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.019   14.0   0.0    1.2  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
        0.1   11.8   0.0       0.15   11.2   0.0    1.3  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera


Domain annotation for each model (and alignments):
>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   5.7e-20   2.5e-16       2      66 ..     111     176 ..     110     179 .. 0.93
   2 !  102.3   0.0   6.3e-33   2.8e-29      94     190 ..     174     308 ..     170     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.7e-20
                 EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEES-.SEEE CS
      Met_10   2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaGsdsteti 66 
                 +f+ +G++++lnlr e+ +yk++ig+vildk+  ++tv++k ++++ +fR+f++e+laG+ + ++ 
  CDO73097.1 111 GFANVGHIAHLNLRPEYLPYKHIIGQVILDKNpTCRTVVNKLDNIDNQFRVFRMELLAGEPDFVVT 176
                 699********************************************************7766654 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 6.3e-33
                 HHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE...................... CS
      Met_10  94 laklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad...................... 170
                 ++++++  +vV dvfAG+Gpfaip+ak  k+  vla+dlnP+s+kyl+ ni+ N+v++ v++++eDgr +ir+ +                        
  CDO73097.1 174 VVTQFKREDVVADVFAGVGPFAIPAAK--KGCAVLANDLNPSSYKYLTMNIAENRVDSLVRAFCEDGRAFIRNAFNRayddplppppqpkprrselkem 270
                 6889***********************..******************************************8444436669****************** PP

                 ..................EEEE--TTTGGGGHHHHHHH CS
      Met_10 171 ..................rvvmnlpksaieFldkvlaa 190
                                   ++vmnlp++ai Fld+   +
  CDO73097.1 271 rapdtpplppaprrqrinHFVMNLPDTAILFLDAFRGV 308
                 *********************************85444 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.9e-08    0.0004      15      73 ..     177     234 ..     172     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.9e-08
                      CS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHH.HHCCHSHHHHHHHH CS
  MethyltransfD12  15 lipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlyk.aliknnveelikel 73 
                      +++  ++++++++FaG g +++ a k+g  vl+nD+n+ ++     ++ +n+v++l+ ++
       CDO73097.1 177 QFK--REDVVADVFAGVGPFAIPAAKKGCAVLANDLNPSSYKYLTmNIAENRVDSLVRAF 234
                      555..6789*****************************9997544147778999999876 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.2e-06     0.019     198     251 ..     176     230 ..     170     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-06
  tRNA_U5-meth_tr 198 tqeskgdll.elycGnGnfslalarnfekvlateiakssveaaqyniaankidnv 251
                      tq +++d++ +++ G G f+++ a++   vla ++  ss +   +nia+n++d +
       CDO73097.1 176 TQFKREDVVaDVFAGVGPFAIPAAKKGCAVLANDLNPSSYKYLTMNIAENRVDSL 230
                      555566654389****************************************975 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.4e-05      0.15      52     121 ..     183     250 ..     133     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
                 EEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC.--SS-E CS
         TRM  52 kvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvlla.ekkkrf 121
                  v+d +++ G  ai  a+      +vlaND+++  ++ +  N+  n v+ +v +  +d +++++ + ++++
  CDO73097.1 183 VVADVFAGVGPFAIPAAKK---GCAVLANDLNPSSYKYLTMNIAENRVDSLVRAFCEDGRAFIRnAFNRAY 250
                 5777888888888877776...5689***************************9999****9985555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2771.21
//
Query:       CDO73098.1  [L=724]
Description: hypothetical protein BN946_scf185007.g152 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-44  148.2   0.2    2.6e-17   62.5   0.0    3.8  4  Mito_carr  Mitochondrial carrier protein
    3.2e-18   65.9   1.6    1.9e-06   28.2   0.0    4.8  4  EF-hand_7  EF-hand domain pair
    1.1e-16   59.0   4.6    3.9e-05   22.9   0.2    6.0  6  EF-hand_1  EF hand
    1.5e-15   55.8   4.4    0.00012   21.7   0.2    5.6  6  EF-hand_6  EF-hand domain
    1.6e-11   43.9   2.4     0.0026   17.6   0.0    4.8  4  EF-hand_8  EF-hand domain pair
      1e-08   34.3   4.7    0.00051   19.4   0.2    4.2  4  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.2e-19   3.5e-16       6      91 ..     359     462 ..     356     467 .. 0.84
   2 !   62.5   0.0   8.6e-21   2.6e-17       8      94 ..     477     561 ..     471     564 .. 0.92
   3 ?   -3.2   0.0       2.8   8.4e+03       2      19 ..     569     586 ..     565     593 .. 0.60
   4 !   22.0   0.0   3.8e-08   0.00011      57      93 ..     642     678 ..     630     680 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........CCCSSTTTSCSS..................HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqt........qkksskksksaa..................ildvlkkiykeeGlrglyrGllpnllrvapa 78 
                 + ++  Gglag +++++++P+d+ K +           +        s+a                   +d+++k++++eG+ g+yrGl+p+l++vap+
  CDO73098.1 359 AYNFGLGGLAGGFGATIVYPIDLGKQQAVYsplrsliaA--------STAlsdsnqrstvvgqllyknSFDCIRKVFRNEGFIGFYRGLGPQLIGVAPE 449
                 568899********************9999566666651........333444444456777899999******************************* PP

                 HHHHHHHHHHHHH CS
   Mito_carr  79 salkfvlyetlkr 91 
                 +a+k++++++++ 
  CDO73098.1 450 KAIKLTVNDFIRS 462
                 *********9986 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 8.6e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 el+aGg+ag +++++t+Pl++vK+rlq+q++ +k ++  a+ +   +i+++ Gl+gly+G+++ llr +p sa++f +y  lkr l+
  CDO73098.1 477 ELFAGGAAGGCQVIFTNPLEIVKIRLQVQGEAAKLEG--AVPKGAMHIIRQLGLLGLYKGASACLLRDIPFSAIYFPAYWHLKRDLF 561
                 799*****************************98865..4999************************************99998665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagava 19 
                 +ls++++l ++++a +v+
  CDO73098.1 569 QLSFFETLTSAAVAYVVS 586
                 456666666666665554 PP

  == domain 4  score: 22.0 bits;  conditional E-value: 3.8e-08
                 HHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  57 keeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +eeG+r++++G  ++++r++p+ + ++v+ye+l+++l
  CDO73098.1 642 REEGFRAFFKGGPARVIRSSPQFGFTLVAYEYLHKFL 678
                 79*******************************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.1e-05     0.062      14      68 ..      61     111 ..      39     114 .. 0.75
   2 !   17.6   0.3   1.3e-06     0.004       7      71 .]     126     188 ..     120     188 .. 0.78
   3 !   28.2   0.0   6.3e-10   1.9e-06       2      69 ..     193     289 ..     193     291 .. 0.75
   4 ?    3.8   0.0     0.027        81      14      44 ..     276     320 ..     275     331 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
   EF-hand_7  14 dgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 dg  yl+ e++ +++      +g  sk+ + +  +lf+  Dt+k G +s+++F+ 
  CDO73098.1  61 DGQKYLNSEQFVNAIAP----KGDLSKIGRAQFATLFRVADTSKRGLVSWEDFVV 111
                 55566666665544442....17777777899*********************86 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 aF+ +D+d++g ++++e+++++ +++      ++++ + ++l + +  +++ +v+ ++EF +l++
  CDO73098.1 126 AFQYFDVDDSGTISYDEFKNVFNANIGPDAIPFDFDCDWVKLYLGK--KNGAHVLGYNEFTQLMK 188
                 4999999999999999999999987765566667666666666666..88889999999999885 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 6.3e-10
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqga...........................gegsklsd.......eelellfkef.DtdkdGvisfdE 65 
                 e+l++aFk +D+d+dgy+++e+++r++  i  ++                                          + +e++++e   ++kdG+i+ ++
  CDO73098.1 193 ERLRQAFKFMDKDQDGYIRPEQFKRIILEIAGHKlsdavierlptlttispgsrisysevvA------FynviremDMVERIIREAtAKSKDGRIDQSD 285
                 689**********************7777666667888888888888886655554444441......0444444455899999986788899999999 PP

   EF-hand_7  66 Flkl 69 
                 Fl+ 
  CDO73098.1 286 FLNH 289
                 9875 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.027
   EF-hand_7  14 dgdgyldkeellr..............llrkifqgagegsklsde 44 
                  +dg++d++++l+                 +if++ag+g+++ + 
  CDO73098.1 276 SKDGRIDQSDFLNhcvsstryslftpmEASIIFHFAGRGNPMQRL 320
                 579999999955557777777755554222233333777777765 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   3.4e+03      12      26 ..      61      75 ..      60      76 .. 0.84
   2 !    7.5   0.0    0.0011       3.3       4      24 ..      91     111 ..      88     112 .. 0.89
   3 !   22.9   0.2   1.3e-08   3.9e-05       5      27 ..     126     148 ..     123     150 .. 0.93
   4 ?    0.8   0.0      0.15   4.6e+02      16      28 ..     177     189 ..     172     190 .. 0.80
   5 !   20.5   0.1   7.5e-08   0.00022       2      26 ..     195     219 ..     194     222 .. 0.92
   6 ?    3.0   0.0     0.029        87      12      24 ..     276     288 ..     275     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                TSSSEEEHHHHHHHH CS
   EF-hand_1 12 DgdGkIdfeEfkell 26
                Dg  +++ e+f++++
  CDO73098.1 61 DGQKYLNSEQFVNAI 75
                78889******9986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                  +Fr++D+ + G +++e+f+ 
  CDO73098.1  91 TLFRVADTSKRGLVSWEDFVV 111
                 58*****************85 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 1.3e-08
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +F+ fD+D +G+I+++Efk++++
  CDO73098.1 126 AFQYFDVDDSGTISYDEFKNVFN 148
                 8******************9986 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.15
                 EEEHHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellkk 28 
                  + ++Ef +l+k 
  CDO73098.1 177 VLGYNEFTQLMKG 189
                 6789*******96 PP

  == domain 5  score: 20.5 bits;  conditional E-value: 7.5e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+++F+ +DkD+dG+I  e+fk+++
  CDO73098.1 195 LRQAFKFMDKDQDGYIRPEQFKRII 219
                 899*******************986 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.029
                 TSSSEEEHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfke 24 
                  +dG+Id ++f++
  CDO73098.1 276 SKDGRIDQSDFLN 288
                 69*********86 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.5   7.4e+03      12      26 ..      61      75 ..      60      79 .. 0.84
   2 !    5.0   0.0    0.0093        28       3      23 ..      90     110 ..      88     112 .. 0.89
   3 !   21.7   0.2   4.1e-08   0.00012       5      27 ..     126     148 ..     122     152 .. 0.92
   4 ?   -2.9   0.0       3.2   9.5e+03      15      27 ..     176     188 ..     172     190 .. 0.76
   5 !   21.2   0.1   5.8e-08   0.00017       1      26 [.     194     219 ..     194     224 .. 0.92
   6 ?    4.2   0.0     0.017        52      11      25 ..     275     289 ..     274     293 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.5
   EF-hand_6 12 dgdGkidaeElrkal 26
                dg  +++ e++++a+
  CDO73098.1 61 DGQKYLNSEQFVNAI 75
                77889******9997 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0093
   EF-hand_6   3 reaFklfDkdgdGkidaeElr 23 
                   +F+  D+++ G +++e+++
  CDO73098.1  90 ATLFRVADTSKRGLVSWEDFV 110
                 579****************96 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 4.1e-08
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 aF++fD+d++G+i+++E++++++
  CDO73098.1 126 AFQYFDVDDSGTISYDEFKNVFN 148
                 8*******************987 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 3.2
   EF-hand_6  15 GkidaeElrkalr 27 
                   + ++E+ ++++
  CDO73098.1 176 HVLGYNEFTQLMK 188
                 478899**99998 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 5.8e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 +lr+aFk +Dkd dG+i +e++++++
  CDO73098.1 194 RLRQAFKFMDKDQDGYIRPEQFKRII 219
                 69********************9976 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.017
   EF-hand_6  11 kdgdGkidaeElrka 25 
                 k++dG id++++ ++
  CDO73098.1 275 KSKDGRIDQSDFLNH 289
                 689*********875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.7e-07    0.0026      23      51 ..      84     112 ..      69     113 .. 0.86
   2 !   15.4   0.2   4.1e-06     0.012      32      53 ..     127     148 ..     125     150 .. 0.90
   3 !    5.6   0.0    0.0048        14      28      43 ..     195     210 ..     177     220 .. 0.79
   4 ?    0.4   0.0       0.2     6e+02      39      50 ..     277     288 ..     275     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.7e-07
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcvl 51 
                 ++  ++ +lfr +Dt + G +s+e+F+v+
  CDO73098.1  84 IGRAQFATLFRVADTSKRGLVSWEDFVVF 112
                 66677889******************986 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.1e-06
   EF-hand_8  32 frefDtdgdGkisfeEFcvlle 53 
                 f +fD d++G+is++EF +++ 
  CDO73098.1 127 FQYFDVDDSGTISYDEFKNVFN 148
                 999***************9875 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0048
   EF-hand_8  28 vdilfrefDtdgdGki 43 
                 ++  f+ +D d+dG+i
  CDO73098.1 195 LRQAFKFMDKDQDGYI 210
                 56679**********9 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.2
   EF-hand_8  39 gdGkisfeEFcv 50 
                 +dG+i++ +F++
  CDO73098.1 277 KDGRIDQSDFLN 288
                 79*******985 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.29   8.8e+02       4      21 ..      92     109 ..      89     113 .. 0.83
   2 !   19.4   0.2   1.7e-07   0.00051       4      24 ..     126     146 ..     125     147 .. 0.92
   3 !   11.7   0.1   4.8e-05      0.14       1      16 [.     195     210 ..     195     218 .. 0.90
   4 ?    1.5   0.0     0.082   2.4e+02      12      21 ..     277     286 ..     275     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.29
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ +D+ + G +s e +
  CDO73098.1  92 LFRVADTSKRGLVSWEDF 109
                 8*****999899998877 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.7e-07
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +Fq +D++ +G+Is +E+k++
  CDO73098.1 126 AFQYFDVDDSGTISYDEFKNV 146
                 4*****************985 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 4.8e-05
                 HHHHHHHH-SS-SSCE CS
   EF-hand_5   1 lkdtFqaiDlNgDGkI 16 
                 l+++F+ +D+++DG+I
  CDO73098.1 195 LRQAFKFMDKDQDGYI 210
                 6778**********99 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.082
                 -SSCE-HHHH CS
   EF-hand_5  12 gDGkIskeEL 21 
                 +DG+I+ + +
  CDO73098.1 277 KDGRIDQSDF 286
                 8*****9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5284.15
//
Query:       CDO73099.1  [L=609]
Description: hypothetical protein BN946_scf185007.g153 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.084   12.8   0.2       0.41   10.6   0.0    2.2  2  EcpB_C    EcpB C-terminal domain


Domain annotation for each model (and alignments):
>> EcpB_C  EcpB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.2   3.5e+03      23      38 ..      91     108 ..      85     112 .. 0.83
   2 ?   10.6   0.0   2.3e-05      0.41      34      59 ..     404     429 ..     390     433 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.2
      EcpB_C  23 yGpCkdkk..egkgCker 38 
                  G Ck  +  +++gC e+
  CDO73099.1  91 DGSCKAMSwyTTEGCYET 108
                 599999999899999886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.3e-05
      EcpB_C  34 gCkerYyvmPgkkvklkkvdvsdkks 59 
                 gCk  Yy++Pg++++ +++  + k +
  CDO73099.1 404 GCKTSYYLTPGNSMSWTYTSSAAKTT 429
                 7****************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2394  (0.133527); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.34s 00:00:01.41 Elapsed: 00:00:00.46
# Mc/sec: 3992.93
//
Query:       CDO73100.1  [L=730]
Description: hypothetical protein BN946_scf185007.g154, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-98  330.7   0.0    2.3e-98  330.1   0.0    1.3  1  Amidase   Amidase
    7.4e-18   64.3   0.1    1.6e-17   63.2   0.1    1.5  1  DUF953    Eukaryotic protein of unknown function (DUF953)


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.1   0.0  2.5e-102   2.3e-98       1     451 []     240     713 ..     240     713 .. 0.87

  Alignments for each domain:
  == domain 1  score: 330.1 bits;  conditional E-value: 2.5e-102
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-.B-SS--HHHHHHHHTT-EEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskaleny.paekDatvverLkkaGavilg 97 
                 e+++af++ +  +++ +n+l +vf++e +++A++ld++ + +g+  gpLhGvP+s+KD+i vkg++t+ G+ +++ + +aekDa+ v+ L+kaGavi++
  CDO73100.1 240 EVIRAFCHVATIAQDLTNCLTEVFFDEGIRRAQELDRHLEeTGEVVGPLHGVPVSIKDHILVKGHDTATGYVSWAFRtVAEKDAVAVDILRKAGAVIYV 338
                 79**************************************9**********************************8637999***************** PP

                 EE--SGGG-SSSSTT-TT---BBTTCTCC......B--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTT CS
     Amidase  98 kTnmdefamgsstensvfgptrNPwdksr......tpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....aless 186
                 kT  ++++++++t+n+++g+t NP+++        tpGGSSGG+ A++A +++pl++GtD+GGSiRiPA++ gl+GlK ++gr+++ g++    ++ ++
  CDO73100.1 339 KTANPQTLLSIETNNNIYGRTLNPYNRLSphptalTPGGSSGGESALIAVHGSPLGVGTDIGGSIRIPAAYMGLYGLKGSVGRMPHGGLMgshdGMDAI 437
                 **************************865566667*******************************************************9999999** PP

                 T-EEEEEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHH CS
     Amidase 187 ldvvGplarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleeal 285
                     Gpla+s++dl l+ rv+l+++p+  + + +  + ++  +e +  ++ l i+++++dgv++++p++  a+++a++aL +aGh v+ +++  ++e +
  CDO73100.1 438 VGALGPLATSARDLTLFCRVMLQYEPWLVEPPLLEMPWKQDVAEGAGIPERLTIAILWDDGVVTPHPPILDALKRAKDALLAAGHDVITWDPLGHQESW 536
                 ***************************999998775555555555555699************************************************ PP

                 HHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSS CS
     Amidase 286 slyylilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtapt 384
                  l+++++++++++++++ l+++   +++  +ls++     + ++ e +k ++e+ +           ++    + ++ +++ ++  + +D++lsP+a+t
  CDO73100.1 537 GLILKLYFLDGGEEYRQVLENDPPVPQTEWILSQVPNGGKPYTVAETFKINLEREA-----------FRSRVLAHWVATKARTRTGRPVDAVLSPVAAT 624
                 ************99997777766333333334444444444444444444444444...........4444445555555555555679********** PP

                 S--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEE...EECCCCT......................TECEEEEEEESTT-HHHHH CS
     Amidase 385 paprlgekdktidsytvlynlldftavvvpvnlaglpals...vpagksed.....................glPvGvqvigkafqeetlL 451
                  apr+++ +  ++ yt+ +nl+d++avv+pv        +   vpag                         + Pv++q++g++++ee+lL
  CDO73100.1 625 LAPRHDATR--WWGYTSYWNLMDYPAVVFPVGRFRAAGSEppqVPAGVVHVgeprnetermvraewdaetyeNIPVSLQLVGRRLNEERLL 713
                 ******997..589****************98544444444449999997789999*********************************98 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   1.8e-21   1.6e-17      22      97 ..      21      94 ..      13     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.8e-21
                EEEEEB--B-TTS-BSSHHHHHHHHHHHHHHHH-SS-EEEEEEE---HHHHT-TTSHHHH..TS---SSSEEEEET CS
      DUF953 22 vfilFlgekdteGesWCPdCvkaepvieealkeapedvklvrvdvGdrevWkdpanpfRkdpklkltgvPtLlrwk 97
                 f++F++++d++G+ WCPdCv+ e+v++ ++   pe    v v+vG+r+ Wk+p npfR  p  ++  +Pt++r  
  CDO73100.1 21 DFLIFYSSRDESGKLWCPDCVAVENVVQATFGP-PEGPSGVIVYVGQRPAWKTPSNPFRAAP-WNVASIPTVIRTR 94
                5899**************************975.777778889*****************99.**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5505.87
//
Query:       CDO73101.1  [L=363]
Description: hypothetical protein BN946_scf185007.g155 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-08   33.4   0.0    6.2e-08   32.5   0.0    1.4  1  FR47             FR47-like protein
    8.1e-08   32.3   0.0    1.3e-07   31.5   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.2e-06   28.7   0.0    2.1e-06   27.9   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    7.5e-05   23.1   0.0    0.00014   22.2   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.058   13.5   0.0    1.7  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.031   14.9   0.0       0.06   14.0   0.0    1.5  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
       0.17   11.9   0.2       0.52   10.3   0.0    1.8  2  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.4e-11   6.2e-08      19      78 ..     276     336 ..     261     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.4e-11
                 -TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  19 kdggelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfe 78 
                   ++++  +++ p  rrrG +  lv+++++++    gk+++++ v +++ ++r+y ++Gf 
  CDO73101.1 276 HRVSAITKVYTTPRWRRRGCAEFLVREVTAQLLYnVGKDSVVLYVGHENSAQRVYDRVGFA 336
                 34699************************9988779************************6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.3e-11   1.3e-07      21     108 ..     244     337 ..     227     349 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.3e-11
  Acetyltransf_10  21 alrerieegealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveee.aekdgikl.eltvnaspyavpfYeklGFka 108
                      ++++r   ++ ll+v++ +g i  ++++ r+++    i+ ++  p +r++G ++ L+ +v ++ + + g     l v   + a+++Y ++GF  
       CDO73101.1 244 RVEARELISKGLLWVYDAEGDITTICAVtRNSHrvsAITKVYTTPRWRRRGCAEFLVREVTAQlLYNVGKDSvVLYVGHENSAQRVYDRVGFAG 337
                      4444444577789***************6666688889999**********************55555555599******************75 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   8.4e-10   2.1e-06      20     117 .]     244     335 ..     223     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 8.4e-10
                     HHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  20 seeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYe 113
                      +e++e +     + l+v+  +g +   + ++ + +   +v +i  ++  p +r++G +  L++++  +++ + g + +vl+v   n  a+r+Y 
      CDO73101.1 244 RVEARELI---SKGLLWVYDAEGDITTICAVTRNSH---RVSAITKVYTTPRWRRRGCAEFLVREVTAQLLYNvGKDSVVLYVGHEN-SAQRVYD 331
                     33333333...6678999999999999999999999...****************************999999999*******8888.99****9 PP

                     HTTE CS
  Acetyltransf_1 114 klGF 117
                     ++GF
      CDO73101.1 332 RVGF 335
                     9**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   5.6e-08   0.00014       3      74 ..     254     335 ..     252     336 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.6e-08
                     EEEEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH..TT....SEEEEE.EEEE.THHHHHHHHHHTTE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea..ae....kgiile.qlel.naekaikfYeklGF 74 
                     g ++V++ +g i   +a+++++     it++++ p +r++G +  L++   a+     g + + +l++ +++ a++ Y + GF
      CDO73101.1 254 GLLWVYDAEGDITTICAVTRNShrvSAITKVYTTPRWRRRGCAEFLVREvtAQllynVG-KDSvVLYVgHENSAQRVYDRVGF 335
                     568976665666554554444488888888*****************963411343333.22334455633489********* PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.3e-05     0.058      69     125 ..     274     335 ..     211     337 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
                     EEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--EEEE--....SSHHHHHTTT- CS
  Acetyltransf_9  69 ktlkaagvtgVavapehrgrgvlskLlaraleemree.gqplsllfP....ssipiYrrfGy 125
                     ++ ++ ++t V + p  r+rg ++ L++++ +++  + g+  ++l+     s+ ++Y r G+
      CDO73101.1 274 NSHRVSAITKVYTTPRWRRRGCAEFLVREVTAQLLYNvGKDSVVLYVghenSAQRVYDRVGF 335
                     678999*************************9999888888888877788888999999998 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.3e-05      0.06       3     137 ..     210     335 ..     209     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
  Acetyltransf_3   3 lLrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgkGya 97 
                     +Lr++t +Dle++++l+++ +    +  plt e a+   ++ + +    +g+ w+  + ++++  ++ +++ +++   a    +  p ++++G+a
      CDO73101.1 210 VLRKATTDDLEPVAQLCKEFADDS-IFFPLTIERARVEARE-LIS----KGLLWVY-DAEGDITTICAVTRNSHRVS-AITKVYTTPRWRRRGCA 296
                     699**********99988544222.3346777766666664.333....8999999.55553455556665555543.66667777889999*** PP

  Acetyltransf_3  98 teavralleyafeelglerlvavidkeNeaSirvleklGf 137
                        vr ++  +  + g + +v  +  eN+a + v+ ++Gf
      CDO73101.1 297 EFLVREVTAQLLYNVGKDSVVLYVGHENSAQR-VYDRVGF 335
                     ****************************9965.9999999 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2     5e+03      54      68 ..     166     180 ..     162     180 .. 0.82
   2 ?   10.3   0.0    0.0002      0.52       6      36 ..     280     310 ..     276     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
  Acetyltransf_13  54 kklarkyfgtedflv 68 
                      k++ar++   ++f+v
       CDO73101.1 166 KAFARSWSRLTGFSV 180
                      689***998888876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
  Acetyltransf_13   6 GisriWvssshRrkgiAtkLldaarenfiyg 36 
                       i ++++ + +Rr+g A  L+  + ++ +y+
       CDO73101.1 280 AITKVYTTPRWRRRGCAEFLVREVTAQLLYN 310
                      699*********************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2799.59
//
Query:       CDO73102.1  [L=493]
Description: hypothetical protein BN946_scf185007.g156 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-45  154.0   0.2    6.7e-45  152.5   0.2    1.8  1  MoaC         MoaC family
    2.4e-37  127.7   0.0    4.1e-37  127.0   0.0    1.4  1  Mob_synth_C  Molybdenum Cofactor Synthesis C
    5.6e-07   30.1   0.1     0.0012   19.3   0.0    2.3  2  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> MoaC  MoaC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.2   1.1e-48   6.7e-45       1     136 []     284     482 ..     284     482 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 1.1e-48
                 E---TTS--EEEEEEEEEEEEE-HHHHHHH........................HTTSSTTB-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEE CS
        MoaC   1 mvdvsekeetkrtAvAegrvklseetleli........................kekklkkGdvlavariagimaaKktseliplcHplpltkvevele 75 
                 mvdv++ke ++r+A+A+gr+ +++ +++l+                        kek+ +kGdvl+va++a+im++K+t+eliplcHpl+l++++v+l+
  CDO73102.1 284 MVDVAHKEPSRRHATATGRIIIPKIAYDLVtgansdgdsrdassaadaaslreaKEKARAKGDVLTVAQLAAIMGCKRTAELIPLCHPLQLSHISVTLH 382
                 9**********************************************9999988788899************************************999 PP

                 EET......................................TTTEEEEEEEEEEEESS--HHHHHHHHHHHHHHHHHHHTTTH.TT-EEEEEEEEEEES CS
        MoaC  76 lee......................................eeesveieatvktegktGvemEALtavsvaaltvyDmvKavd.kemvieevrlveKsg 135
                 +e                                          s+ ++a+v++egktGvemEALtavsv++ltv+Dm+Ka++ kemvi e+++++K+g
  CDO73102.1 383 PEVnprtasdapnghagqetsgqetfsgytrsgignrqdesLVYSIVCRAEVSCEGKTGVEMEALTAVSVGLLTVWDMLKALAgKEMVIGEMMVTRKEG 481
                 8889999*****************************98876667889***********************************99*************** PP

                 S CS
        MoaC 136 G 136
                 G
  CDO73102.1 482 G 482
                 9 PP

>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.0   6.9e-41   4.1e-37       2     127 ..     138     263 ..     137     264 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 6.9e-41
                  EEEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE-.-SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEEE-TTSEEESSSS-SS-EEH CS
  Mob_synth_C   2 elrfIElmpvgegeewrekkvvsadeilerieerlalleak.ketkgpakrykikdgkgeiglIapvsepFCasCnRlRltadGklktCLfaeeeidl 98 
                  ++rfIE+mp++ g++w++ k+v++ e+l ri++r++   ++ +e +++a+ y i++++g++g+I+++s++FC sCnRlRltadG++k+CLf  eei+l
   CDO73102.1 138 SVRFIEFMPFT-GNKWDKGKMVPSTELLSRIRSRYPAVCKApDELNDTARSYIIPGHSGSFGFISSMSDHFCGSCNRLRLTADGQIKVCLFDAEEISL 234
                  69********9.999*********************987774777***************************************************** PP

                  HHHHHTT--HHHHHHHHHHHHHT----HH CS
  Mob_synth_C  99 rdllregaseeeLkelikealarkkekhk 127
                  rd +r+ga++++L + i +a+a kkekh+
   CDO73102.1 235 RDRMRAGAEDSALLATIGTAVAGKKEKHA 263
                  **************************995 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.9e-07    0.0012      13      70 ..      29      85 ..      28      88 .. 0.90
   2 !    9.8   0.0   0.00016      0.97     121     165 ..      85     130 ..      81     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.9e-07
                 TTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 13 fCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerl 70
                 +C  +e v+  +++++l+ +e+++++  +  + gv  + l+ggep++++ +v++ e +
   CDO73102.1 29 YCMPSEGVELSPPAHILTDDEVIRLATLF-IKSGVTKIRLTGGEPTVRKGIVDIFEIM 85
                 999999999********************.8****************99887776654 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00016
                  HTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 121 mnrghtfeevlealeklreagikr...vvdrivglpGendeeleelle 165
                  m r+ + ++vl++le  +++gik+   v+ ++v+++G nd+e+ +++e
   CDO73102.1  85 MTRRMGHDAVLRSLE--TALGIKElrsVKLNVVVVKGLNDHEVLDFVE 130
                  4488999********..7777788889***************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3493.66
//
Query:       CDO73103.1  [L=547]
Description: hypothetical protein BN946_scf185007.g157 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4218.06
//
Query:       CDO73104.1  [L=268]
Description: hypothetical protein BN946_scf185007.g158 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-30  104.1   2.0    2.4e-23   82.3   0.3    2.2  2  NIPSNAP   NIPSNAP
  ------ inclusion threshold ------
       0.19   11.6   1.0       0.37   10.7   1.0    1.5  1  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> NIPSNAP  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   2.6e-08   0.00023       5      74 ..      62     133 ..      57     150 .. 0.83
   2 !   82.3   0.3   2.6e-27   2.4e-23       1     101 [.     169     265 ..     169     266 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.6e-08
                 EEEE-TT-HHHHHHHHHHTHHHHHH..HHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHH CS
     NIPSNAP   5 tYtlkpgklaeflerfareiiaiqe..khggeliGyfaseiGalnqvlhlwaydslaarearraalaadpew 74 
                 ++++kp ++ ++ ++ +++  ai e  +++++l G + + +G+ ++++h++ y+++  + ++ ++ +++   
  CDO73104.1  62 VHKVKPSAVDDYKKAAEAYYTAIKEdpELHVKLTGSWEAVVGEQDTFYHILEYENYSGYDKTTQKIRNSEHI 133
                 68899999999977777777776652259*******************************999998877655 PP

  == domain 2  score: 82.3 bits;  conditional E-value: 2.6e-27
                 EEEEEEEE-TT-HHHHHHHHHHTHHHHHHHHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHHHTT..EEEEEEEEEEE-T CS
     NIPSNAP   1 yelrtYtlkpgklaeflerfareiiaiqekhggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaavekavdldliksmesrilkpts 99 
                 +elrtY+l+pg+l ++   ++++i+a+ +   + ++G+++s++G+l+qv+h+w+y++l++r+++r+++++  +w+++v k+ ++     m+  il p++
  CDO73104.1 169 FELRTYQLHPGTLLQWEHTWRKGIEARRK--FVAPVGAWFSQVGRLHQVHHMWQYPDLQTRKETREKAWQLDGWSETVSKTAEY--SMLMDAIILEPLP 263
                 59***************************..****************************************************9..6679999999999 PP

                 T- CS
     NIPSNAP 100 fs 101
                 fs
  CDO73104.1 264 FS 265
                 98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   4.1e-05      0.37      16      33 ..      72      89 ..      69      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.1e-05
                -HHHHHHHHHHHHHHSTT CS
       TPR_1 16 kydeAleyyekALelnPn 33
                +y++A e+y  A++ +P+
  CDO73104.1 72 DYKKAAEAYYTAIKEDPE 89
                9***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1824.06
//
Query:       CDO73105.1  [L=292]
Description: hypothetical protein BN946_scf185007.g159 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   12.0  10.1       0.37   11.3  10.1    1.2  1  T3SSipB   Type III cell invasion protein SipB
       0.42    9.1  19.3       0.99    7.9  19.3    1.6  1  Macoilin  Macoilin family
       0.56    8.8   1.7       0.74    8.4   1.7    1.1  1  DUF3138   Protein of unknown function (DUF3138)
        1.2    9.6   7.1        1.2    9.5   5.2    2.1  1  LPP       Lipoprotein leucine-zipper


Domain annotation for each model (and alignments):
>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.1   8.2e-05      0.37      18     111 ..     189     282 ..     187     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.2e-05
                 HCHHHHHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHH CS
     T3SSipB  18 kSLsqLenrlaawkamskaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaaeqQag 111
                 + ++ L+  +a  + +s+ +++a ++lSdel+   ++a+ a+++++ a ++++ a+   ++  ++  +a k l+e +       ++ + + Qa+
  CDO73105.1 189 STIERLKMEMAGLRRQSQDAVNASLRLSDELRASQEDAARAKEEATRAKAALKVAENMLEEEARRRIQAEKTLEEETRRRMAAEDALRHQVQAQ 282
                 5678899999999*********************************************999888888999999987444444444444444444 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  19.3   0.00022      0.99     270     498 ..      43     284 ..       9     292 .] 0.47

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00022
    Macoilin 270 kkkhehnesvdsklqekeymenkskskrlsksess..gsesellveesvkskssssssssn........knskkasagsagssnssskkhsessksvts 358
                 +++ + n+s+ + +  + ++  + +  ++++s++s  +s s++ +   v+s+s s+ ss              + + +  + +   + + ++ s+s   
  CDO73105.1  43 QQSLHSNSSHSHSQPPHGHLRPHPQRSPVNTSTNShtQSVSKVATLRPVDSRSFSHGSSIRsralydddD---DDEMDWEEDGPGGPYSDEDYSGSEDM 138
                 2221212222222222222222222222222221100111111111222222211111111112222110...11111111222222222222222221 PP

    Macoilin 359 ss......ssknskkqklpaGkssaalkdaaenslpnnqlskkdalvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllq 451
                         +++ns    +p+ +s +a++ +  +s+  +  s  + +   e++i++Lk e++  r++ q+  +    l+ e r+ +++    k+e    +
  CDO73105.1 139 PYqydprhHNHNSSSLAGPSHRSYSASQAQPGRSVLHGAFSGFSGVDHPESTIERLKMEMAGLRRQSQDAVNASLRLSDELRASQEDAARAKEEATRAK 237
                 11333444444444446666666667777777788889999999999**************99999988777666666666666666666666666666 PP

    Macoilin 452 tklhelvsakqkdkqtlqqlekrLkeekearaslekqLaeekkrkke 498
                 + l+ + ++  ++ +   q ek L+ee + r+++e  L+++ +++++
  CDO73105.1 238 AALKVAENMLEEEARRRIQAEKTLEEETRRRMAAEDALRHQVQAQRK 284
                 66655555555555555555666666666666666666555444443 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.7   0.00016      0.74      10      82 ..     174     244 ..     171     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00016
     DUF3138  10 valaldglaaaaatadrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaaaeaaaaltedd 82 
                 + +a+ g++++++  + i++lk ++  l+rq ++  +a +  + +   ++s  +aa a  +a++a aal   +
  CDO73105.1 174 LHGAFSGFSGVDHPESTIERLKMEMAGLRRQSQDAVNASL--RLSDELRASQEDAARAKEEATRAKAALKVAE 244
                 4579**************************9875433322..2333344455666666666766666664332 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2   0.00028       1.2      18      40 ..     214     236 ..     188     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00028
         LPP  18 qlssdvnsakaaaqaakeEAaRA 40 
                  ls+++ +++++a+ akeEA RA
  CDO73105.1 214 RLSDELRASQEDAARAKEEATRA 236
                 58999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1739  (0.0969937); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2061.12
//
Query:       CDO73106.1  [L=961]
Description: hypothetical protein BN946_scf185007.g160 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-58  191.4  23.8    1.3e-07   32.1   0.1   11.9 12  WD40         WD domain, G-beta repeat
    2.9e-47  160.1   0.0    4.6e-47  159.5   0.0    1.3  1  Utp13        Utp13 specific WD40 associated domain
    4.6e-10   39.7   3.5       0.57   10.5   0.0    7.7  8  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00017   21.0   0.0    0.00066   19.1   0.0    1.9  2  WD40_like    WD40-like domain
     0.0007   18.4   6.0        7.9    5.0   0.2    5.3  6  Nup160       Nucleoporin Nup120/160
     0.0063   15.9   0.2       0.21   10.9   0.0    2.7  3  Mcl1_mid     Minichromosome loss protein, Mcl1, middle region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         6   1.8e+04      19      29 ..      31      42 ..      28      44 .. 0.63
   2 ?    0.5   0.0      0.44   1.3e+03      11      26 ..      64      79 ..      54      89 .. 0.72
   3 !   22.3   0.1   5.5e-08   0.00017       8      38 .]     111     142 ..     103     142 .. 0.84
   4 !   12.4   0.0   7.4e-05      0.22       4      38 .]     149     194 ..     146     194 .. 0.88
   5 !   32.1   0.1   4.5e-11   1.3e-07       3      38 .]     208     244 ..     206     244 .. 0.93
   6 !    6.3   0.0    0.0066        20      24      38 .]     299     316 ..     277     316 .. 0.75
   7 !   17.8   0.1   1.5e-06    0.0046       7      37 ..     432     463 ..     424     463 .. 0.90
   8 !   18.7   0.0     8e-07    0.0024       1      38 []     480     533 ..     480     533 .. 0.86
   9 !   22.5   0.1     5e-08   0.00015       3      37 ..     555     590 ..     553     591 .. 0.90
  10 !   27.5   0.1   1.3e-09   3.9e-06       3      38 .]     607     643 ..     605     643 .. 0.90
  11 !   23.3   0.1   2.7e-08     8e-05       2      38 .]     648     685 ..     647     685 .. 0.89
  12 !   13.6   0.0   3.2e-05     0.095       2      37 ..     690     726 ..     689     727 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6
                ETTSSEEEEE.E CS
        WD40 19 spdgawlasG.s 29
                 pdg+ l+++ +
  CDO73106.1 31 TPDGSKLVTCvG 42
                577777777644 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.44
                SSEEEEEEETTSSEEE CS
        WD40 11 ssvtslafspdgawla 26
                 s+tsl+  p+++ l+
  CDO73106.1 64 ESITSLCITPSSSHLL 79
                46*****888888853 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 5.5e-08
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++H  +v+ ++ +p +++lasGs Dg v++Wd
  CDO73106.1 111 RAHdAPVHVCKADPTSTYLASGSADGVVKVWD 142
                 699777977779*******************9 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 7.4e-05
                 EEEEESSSS.EEEEE....EETTSSE......EEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtsla....fspdgaw......lasGsdDgtvriWd 38 
                 ++ ++GH++ v++la    f+p++        l+++s D  +ri+d
  CDO73106.1 149 THLFKGHGGvVSALAfnypFDPSSVVreqkmqLITASVDTRIRIFD 194
                 5779***7757***999999999999******999*********98 PP

  == domain 5  score: 32.1 bits;  conditional E-value: 4.5e-11
                 EEEEEESSSSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHssv.tslafspdgawlasGsdDgtvriWd 38 
                 +  +l+GH sv ++l++spdg+wl+sG++D  v iWd
  CDO73106.1 208 PEAVLEGHVSVpRGLDVSPDGKWLVSGGRDSVVLIWD 244
                 66789***8899************************9 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0066
                 E...EEEEETTSEEEEEE CS
        WD40  24 w...lasGsdDgtvriWd 38 
                     + +G+++g vriWd
  CDO73106.1 299 GrlrFYTGGEKGLVRIWD 316
                 2445689**********9 PP

  == domain 7  score: 17.8 bits;  conditional E-value: 1.5e-06
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 ++GHs  v +l+    g+ lasGs+D++ riW
  CDO73106.1 432 ISGHSEiVLCLDRGAQGRVLASGSKDRSARIW 463
                 57**6657************************ PP

  == domain 8  score: 18.7 bits;  conditional E-value: 8e-07
                 TEEEEEEESS.SSEEEEE.............EETTSSE..EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla.............fspdgaw..lasGsdDgtvriWd 38 
                 ++c+ +++GH  sv ++a              s d ++  +++Gs D+t+++Wd
  CDO73106.1 480 WRCVAICEGHaESVGAIAmsrkafsgeaapsGSGDDTLrfMFTGSQDKTIKMWD 533
                 689*******988*999999***99**999944444445488***********9 PP

  == domain 9  score: 22.5 bits;  conditional E-value: 5e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  l+t ++H ++++sl++ p+ ++l+s s D+t ++W
  CDO73106.1 555 SLTTHKAHdKDINSLDVAPNDRLLVSVSQDRTAKVW 590
                 56777899999**************99********* PP

  == domain 10  score: 27.5 bits;  conditional E-value: 1.3e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l+t++GH  +v++++f +  + la+Gs D+tv++W+
  CDO73106.1 607 LLGTCKGHkRGVWCVRFGRTERVLATGSGDKTVKLWS 643
                 789*****655****************99*******5 PP

  == domain 11  score: 23.3 bits;  conditional E-value: 2.7e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 
                 +c++t++GH +sv  ++f   g  ++s+ s Dg v++W+
  CDO73106.1 648 TCVKTFEGHtNSVLRVDFLNAGMQIVSSaS-DGLVKLWN 685
                 79*******999****99999999987736.*******8 PP

  == domain 12  score: 13.6 bits;  conditional E-value: 3.2e-05
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +c  t + H + v++la+s+d ++++sG  D  v +W
  CDO73106.1 690 ECAATMDNHeDKVWALAVSSDESMIVSGAADSVVTFW 726
                 67788899*666****************99****999 PP

>> Utp13  Utp13 specific WD40 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.0   1.5e-50   4.6e-47       1     142 []     748     931 ..     748     931 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 1.5e-50
                 -HHHHHHHHCCHHHHHHHHHHHSSSTHHHHHHHHHHHS-SS-...-STSSSSSHHHHHHHHC--HHHHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHS CS
       Utp13   1 eqelqnllrkkdyreAiaLAlkldqpkrllkllkevleseee...eeesitgskevdevlkslskeqleklLkyirdWntnartsevAqrvLnailksl 96 
                 eq+lqn+l+ +dyr+Ai LAl++ qp+rl++++ +++++++    +  sitg+ +vdevl++l+ ++l++lL+y+rdWn++a+ts+vAqrvL+a++k  
  CDO73106.1 748 EQDLQNYLALHDYRNAILLALSMGQPGRLHSMFATLTSAADPtvpKMPSITGHPAVDEVLRTLPGTDLVRLLRYVRDWNAHAKTSTVAQRVLHAVVKLR 846
                 7***********************************988777999****************************************************** PP

                 -HHHHHS--.......................................-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXX CS
       Utp13  97 saeellele.......................................glkellealipYteRHlkRldrlveesylldytlqem 142
                 +ae++++++                                       +lkel++a+ipYteRHl+R+++l+++sy+++++l+em
  CDO73106.1 847 TAEDIARAFdedaaftaasaaaatpadedgaakpisaevvplegrgttSLKELIDAMIPYTERHLTRMEKLLQDSYVVEHLLSEM 931
                 ***********************************************************************************99 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0093        28      36      89 ..     112     164 ..     100     166 .. 0.83
   2 ?    4.4   0.0     0.015        45      42      75 ..     220     253 ..     177     266 .. 0.82
   3 ?    0.6   0.0      0.24   7.2e+02      56      82 ..     306     332 ..     301     360 .. 0.84
   4 ?    1.8   0.0     0.098   2.9e+02      35      77 ..     433     478 ..     408     487 .. 0.64
   5 ?    4.2   0.0     0.018        54      33      66 ..     558     591 ..     546     600 .. 0.84
   6 !   10.5   0.0   0.00019      0.57      34      87 ..     611     663 ..     585     668 .. 0.81
   7 !    6.2   0.1    0.0043        13      38      86 ..     657     704 ..     654     710 .. 0.86
   8 ?    2.3   0.0     0.072   2.1e+02      31      65 ..     685     726 ..     679     743 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0093
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++d  v+  +  p  + La + +dg v++ d+  g v h ++ +    v+ l +
   CDO73106.1 112 AHDAPVHVCKADPTSTYLASGSADGVVKVWDILRGYVTHLFKGHGG-VVSALAF 164
                  56667777777888999**********************9998877.4777766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  r+L  +pdgk L+ +  d+ v + d++s+   ++
   CDO73106.1 220 RGLDVSPDGKWLVSGGRDSVVLIWDISSKAPAEK 253
                  589999********************99877766 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.24
  ANAPC4_WD40  56 aysdgevrlldaesgkvvhslsvksek 82 
                  + ++g vr+ da +g+v+ +l  ++e+
   CDO73106.1 306 GGEKGLVRIWDAREGTVLFTLGQEQED 332
                  668999************999887765 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.098
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrl...ldaesgkvvhsls 77 
                  +++++ v +L    +g++La + +d + r+   ++a  g+ v++++
   CDO73106.1 433 SGHSEIVLCLDRGAQGRVLASGSKDRSARIwapVSARAGEEVSAVP 478
                  456677888888999***********99993333555555555554 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.018
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +++++d+ ++sL   p+++lL+ + +d + ++ +
   CDO73106.1 558 THKAHDKDINSLDVAPNDRLLVSVSQDRTAKVWE 591
                  56899*******************9998887765 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00019
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                   +++++ v ++++   +++La +  d +v+l + e+ ++v++++ ++++ v  +
   CDO73106.1 611 CKGHKRGVWCVRFGRTERVLATGSGDKTVKLWSLEDFTCVKTFEGHTNS-VLRV 663
                  567888999**********************************998875.6555 PP

  == domain 7  score: 6.2 bits;  conditional E-value: 0.0043
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   ++v  + + + g  ++ + sdg v+l ++ ++++  +++ +++k v  
   CDO73106.1 657 TNSVLRVDFLNAGMQIVSSASDGLVKLWNVRDEECAATMDNHEDK-VWA 704
                  677888999999***************************999985.655 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.072
  ANAPC4_WD40  31 tl.......eedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  ++       + d+++ +v +La + d+++++ + +d+ v + 
   CDO73106.1 685 NVrdeecaaTMDNHEDKVWALAVSSDESMIVSGAADSVVTFW 726
                  5555555556789999*******************9988764 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.88   2.6e+03       6      32 ..     222     248 ..     221     252 .. 0.88
   2 !   19.1   0.0   2.2e-07   0.00066       6     124 ..     621     741 ..     617     769 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.88
   WD40_like   6 idiskkgslilyGgkddkctvlklesl 32 
                 +d+s++g+ ++ Gg+d  + + ++ s+
  CDO73106.1 222 LDVSPDGKWLVSGGRDSVVLIWDISSK 248
                 79**************99999998876 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.2e-07
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvv.tlDGtillslleneeevenek.ieedistvkvi.ddklliGtnk 101
                 + + +   +++ G+ d+++++ +le  + v  +e+ ++Sv+ v +l+  + +v  + DG + l  ++ ee   + +  e+ +    v  d+ +++ +  
  CDO73106.1 621 VRFGRTERVLATGSGDKTVKLWSLEDFTCVKTFEGHTNSVLRVDFLNAGMQIVSsASDGLVKLWNVRDEECAATMDnHEDKVWALAVSsDESMIVSGAA 719
                 56666778899************************************9966665167**********99955555505556766666515567888889 PP

   WD40_like 102 GsiyvfskdlqleevllgqsseI 124
                  s+ +f +d ++ee  + ++++ 
  CDO73106.1 720 DSVVTFWRD-CTEEQQVEKETQR 741
                 999999999.7777777776665 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0028       8.4     220     249 ..     114     145 ..      63     151 .. 0.72
   2 ?   -3.1   0.0      0.76   2.3e+03     224     248 ..     172     196 ..     170     203 .. 0.87
   3 ?   -0.0   0.0     0.089   2.6e+02     232     248 ..     519     535 ..     514     565 .. 0.86
   4 ?    1.1   0.1      0.04   1.2e+02     223     248 ..     573     593 ..     551     599 .. 0.79
   5 !    4.3   0.0    0.0044        13     229     257 ..     626     654 ..     618     665 .. 0.84
   6 !    5.0   0.2    0.0027       7.9     237     259 ..     676     698 ..     656     740 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0028
                 EEET.......TTTEEEEEETT-EEEEEETTT CS
      Nup160 220 dvavavvei..gqtylfalsrdgkLrvWnllt 249
                 d+ v+v ++  ++tyl++ s dg+++vW++l 
  CDO73106.1 114 DAPVHVCKAdpTSTYLASGSADGVVKVWDILR 145
                 3444444455689****************975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.76
                 .....TTTEEEEEETT-EEEEEETT CS
      Nup160 224 avveigqtylfalsrdgkLrvWnll 248
                 +vv++++  l ++s+d ++r+ +l+
  CDO73106.1 172 SVVREQKMQLITASVDTRIRIFDLS 196
                 788889999*************997 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.089
                 EEEEEETT-EEEEEETT CS
      Nup160 232 ylfalsrdgkLrvWnll 248
                 + f+ s+d+++++W+l+
  CDO73106.1 519 FMFTGSQDKTIKMWDLS 535
                 77999**********97 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.04
                 T.....TTTEEEEEETT-EEEEEETT CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnll 248
                 +     ++ +l+++s+d++ +vW ++
  CDO73106.1 573 P-----NDRLLVSVSQDRTAKVWEID 593
                 3.....78899************875 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.0044
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatid 257
                 ++ +l++ s d+++++W+l++ +c+ t++
  CDO73106.1 626 TERVLATGSGDKTVKLWSLEDFTCVKTFE 654
                 67899999*****************9965 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.0027
                 ETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 237 srdgkLrvWnlltgkclatidll 259
                  +dg +++Wn+++  c+at+d  
  CDO73106.1 676 ASDGLVKLWNVRDEECAATMDNH 698
                 5799***************9976 PP

>> Mcl1_mid  Minichromosome loss protein, Mcl1, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.039   1.2e+02     108     149 ..      63     106 ..      57     134 .. 0.74
   2 !   10.9   0.0     7e-05      0.21     116     152 ..     405     441 ..     370     461 .. 0.90
   3 ?   -3.3   0.0       1.5   4.4e+03     248     267 ..     692     711 ..     681     718 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
    Mcl1_mid 108 gEevtavalgkkw..vavaTskrylRiFslsGvqlavlslpgpv 149
                 +E++t+++++ +       Ts+  lRi++l+  +    +l +p+
  CDO73106.1  63 TESITSLCITPSSshLLLFTSSLSLRIYELPQSSAPHTKLVKPI 106
                 4999999998776569************9877666666666655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 7e-05
    Mcl1_mid 116 lgkkwvavaTskrylRiFslsGvqlavlslpgpvVtl 152
                 l+++ va aT++ ++R++s+s++  +++s ++++V +
  CDO73106.1 405 LSDTHVALATNSSLIRVYSTSSLDARLISGHSEIVLC 441
                 67888************************99999976 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.5
    Mcl1_mid 248 akkksskedsyWpvgvsedk 267
                 a +++++ed++W ++vs d+
  CDO73106.1 692 AATMDNHEDKVWALAVSSDE 711
                 3344446799***9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 6182.62
//
Query:       CDO73107.1  [L=543]
Description: hypothetical protein BN946_scf185007.g161 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-110  368.2   0.0   4.8e-110  367.8   0.0    1.0  1  DUF89     Protein of unknown function DUF89


Domain annotation for each model (and alignments):
>> DUF89  Protein of unknown function DUF89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.8   0.0  2.7e-114  4.8e-110       1     348 [.     103     505 ..     103     509 .. 0.96

  Alignments for each domain:
  == domain 1  score: 367.8 bits;  conditional E-value: 2.7e-114
                 HHHTHHHHHHHHHHHHHHH.....HTCCHHHHHHHHHHHHHHHHHHHHCTTCGHHH-HHHH...............T-BTTBSBHHHHHHHHHHHHHHH CS
       DUF89   1 tleerlpciltqviddlek.....akdekeeelkkiieelselkeelqtdkpltpledeee...............krswfnapwlfaecylyrrllel 79 
                 t+ +rlp+il ++i+d+       +++e+  +l ++ie+++ l++elq++++l+p+ d++e               +++++napwlfae y yrrl+e+
  CDO73107.1 103 TMGQRLPTILGKAIEDVVVtlnqeYDEERIVDLVHCIERMEGLMKELQEQAKLRPIIDDGEadvalwnkliakyfhGKTFMNAPWLFAEAYKYRRLQEC 201
                 6789************99976665555588999999999999********************************************************* PP

                 HTHSGGGTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSH.............HHHHHHHHHHHHHHCG--CCCHT..SHHCHHHHH..HHHHHHHHH CS
       DUF89  80 fglskelknyDpFkeqKeesnksalkaveelakrleelede.............kelfkellkislwGNaiDlslla..teediqkdq..eeearkale 161
                 f  sk++k+yD+F++qK++++ ++ +av el+ r+ e  +              + +f el++i+lwGN +Dlsll+  tee+i ++q  + e  +a+e
  CDO73107.1 202 FSVSKYWKSYDVFFRQKCDTFSRSHDAVFELSMRFAEPFKLkdglspaekleaeRLMFLELTQICLWGNSTDLSLLInmTEEQIRSLQstGGENLAATE 300
                 **********************************9888877899********************************************9999******* PP

                 CTESEE-HHHHHHHH...CTCHTSEEEEE--BTTHHHHHHHHHHHHHHHCTTTSEEEEEEBSS--TTTB-BHHHHHHHHHHHH-TTTS.........HH CS
       DUF89 162 knilvddleklwekl...kkkkakrvdivlDNaGfElvfDlllaeeLlesglatkVvlhvkaiPwfvsDvtpeDfewlleqladsksf.........el 248
                 knil +++++lwe +    +++ +r+d+vlDNaGfEl++D+++a++L++sgla+++++h+k +PwfvsDvt++D+ewll+++   + f         +l
  CDO73107.1 301 KNILGNHMQRLWETVvslRQNTGGRIDFVLDNAGFELYCDCVYADFLIQSGLAKEIRFHGKRYPWFVSDVTKKDWEWLLNSMVYGHLFpkasdeekeSL 399
                 *************************************************************************************************** PP

                 HHCHTTHHHHHHTSEEEEESSCGGSSS--CCGSS.SHHHHHHHHHC-SEEEEEHHHHHHHHTTSCTTTTTSEHHHHT.....GTSS--EEEEEE--SHH CS
       DUF89 249 salgagldellkegklvlrgssfwttglsysemp.eapelyeelekadLvifKGdlNyrkLtgdrkwppttpfttal.....gfspvpvlaLrtvKadv 341
                 + lg++++++ kegk+++++++fw+tg+ ++e++ eap+l+  l+++dLvifKGdlN+rkLt d+ +pp t+f+ a+     +++  +v++Lrt+K+dv
  CDO73107.1 400 RRLGQRWKQYEKEGKWIYEQHPFWCTGFTFWELHnEAPDLFLHLSRSDLVIFKGDLNHRKLTYDCAAPPSTEFEIAIgpmasAAGAPRVCSLRTIKSDV 498
                 ********************************************************************************9999999************ PP

                 HHHHHST CS
       DUF89 342 vaglleg 348
                 v+gl ++
  CDO73107.1 499 VVGLGPE 505
                 ***9833 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3742.80
//
Query:       CDO73108.1  [L=407]
Description: hypothetical protein BN946_scf185007.g162 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-40  139.5   0.0    2.1e-40  138.9   0.0    1.2  1  Ribonuclease_T2  Ribonuclease T2 family


Domain annotation for each model (and alignments):
>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   1.2e-44   2.1e-40       2     176 ..      62     238 ..      61     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 1.2e-44
                      SEEEEEEE-HHHHSS..SSS----.-TS--SS-EEEEEEEE-TTS-.--S--TTS---.......GGGG.GGGHHHHHHHS----SH..HHHHH CS
  Ribonuclease_T2   2 dlllltqqWpgsfCeektkkecekvpdkpaedftihGLwpdnsgksypenCnssekfd.......ekei.sdllaelnkyWpslikk..slwkh 85 
                      +lll+tq+W       +t+++   +p    +++tihGLwpdn ++s +enC+ s++++        +   sd+l+ +++yW++++ +  ++w+h
       CDO73108.1  62 GLLLQTQFW-------DTDPST--GP---SNSWTIHGLWPDNCDGSFTENCDPSRDYTniaglltDQ-GaSDTLSFMQEYWVDINGQneQFWEH 142
                      578999999.......555554..45...68***********88899**********9888887444.3599************85578***** PP

                      HHHHTGGGGTT...T.S.......-SHHHHHHHHHHHHTT--HHHHHHHTT--S.SS-EEEHHHHHHHHHHHHSS--EEEEEE..--EEEEEEE CS
  Ribonuclease_T2  86 EwekHGtCaas.lpa.l.......ksehkYFqkalelrkkldlkkvLakagIvPsktksyslseikdalkkaigvkpkieCskdskeqalseve 170
                      Ew+ HGtC+++ +p+ l        + + +Fq++++l+k+l+++++L++agI+P+++k+++ls++++a+k+a+gv+p ++C+     ++l+++e
       CDO73108.1 143 EWSTHGTCYSTlKPScLpsgspkgAEAVAFFQTVVKLFKTLPTYDFLSQAGITPTTSKTFTLSTLTNAIKDATGVTPALNCDG----STLNSIE 232
                      ***********8777615555644445******************************************************98....99***** PP

                      EEEETS CS
  Ribonuclease_T2 171 lcldkq 176
                      + ++ +
       CDO73108.1 233 YYFNLK 238
                      988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2805.95
//
Query:       CDO73109.1  [L=633]
Description: hypothetical protein BN946_scf185007.g163 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.4e-111  370.9   0.0     1e-110  370.4   0.0    1.1  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.4   0.0  5.8e-115    1e-110       8     427 ..      90     521 ..      85     527 .. 0.95

  Alignments for each domain:
  == domain 1  score: 370.4 bits;  conditional E-value: 5.8e-115
                 EEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHH CS
      Aldedh   8 tievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelae 105
                  i  ++Pat   + ++ a ++e++++ ++ A++a+k+wa++++ +R++++r + + l +++e +a++ +++tGk++ +a+  e+  +++ l++ +++ e
  CDO73109.1  90 YITAYDPATAYHLDTILADSPEEIKQKINDAHQAQKKWAETSFDDRRRVMRSLKKWLVDNQETCAKVACRDTGKTMLDAALgEIITTASKLDWLINHGE 188
                 48899***********************************************************************999988***************** PP

                 H.HSEEEEEEC...TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCH CS
      Aldedh 106 k.legevlpss...egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsev 196
                 + l+ e+ +++     k ++v++ePlGvv+aIt+WN+Pl+ a   +++ l aGN+vvlK++e + +s++ ++++++e+    g +++++++v+    e 
  CDO73109.1 189 RaLSPEARSNNlimFYKSSYVHYEPLGVVAAITSWNYPLHNAWSPIIAGLFAGNSVVLKCSEHVIWSTTWFVQAIKEClkacGHDEQLVQLVCC-YPEE 286
                 *8888886665677899**********************************************9999999998888877777************.5567 PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 +eal++hp +++++f+Gs    +++a+aa++ l++vtlElGGk+p+i+l+++Dl+k ++ +++g++ naGQ+Ci ++r+lv+es yd++   ++e+a k
  CDO73109.1 287 AEALTKHPLIRHITFIGS----ERVAQAATEYLTPVTLELGGKDPAIILPSTDLEKWISLLMRGVYQNAGQNCIGIERILVHESQYDDLYRMFTERADK 381
                 89****************....567788899999***************************************************************** PP

                 --BS-TTS.......TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHH CS
      Aldedh 296 lkvgdpld.......edtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeea 386
                 l+ g++l+       +  dvG++is +++  ++  ++ea++ega l +Gge  +++ le+g +++Ptvlanv+p++++aq+E+F+P++++ik+++++ea
  CDO73109.1 382 LRPGHSLKspgdgvaPVADVGAMISGERFPGLQHAIQEAVNEGAILSVGGEpWHHPYLEQGTYFKPTVLANVDPNSAVAQHELFAPIACIIKYETIDEA 480
                 *****88878888889***********************************9779******************************************** PP

                 HHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSS CS
      Aldedh 387 ieiaNdteyGLaagvftkdleraervaerleaGnvyiNdst 427
                 +eiaN t+yGL+a+vf+   + + ++a+rl++G+v iNd  
  CDO73109.1 481 VEIANGTRYGLGASVFGPVKDDCIKIAKRLQCGMVAINDFG 521
                 **************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 3916.57
//
Query:       CDO73110.1  [L=439]
Description: hypothetical protein BN946_scf185007.g164 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-10   41.6   7.7    2.3e-10   40.7   7.7    1.5  1  zf-RING_2      Ring finger domain
    2.4e-09   37.3   8.1    5.1e-09   36.3   8.1    1.6  1  zf-rbx1        RING-H2 zinc finger domain
    9.7e-07   28.5   9.4    9.7e-07   28.5   9.4    1.9  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    1.6e-06   27.9   7.2    1.6e-06   27.9   7.2    1.6  2  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    1.6e-06   28.0   7.9      4e-06   26.8   7.9    1.7  1  zf-RING_UBOX   RING-type zinc-finger
    3.1e-06   27.2   1.1    6.1e-06   26.2   1.1    1.4  1  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
    4.7e-05   23.2   4.8    4.7e-05   23.2   4.8    1.6  2  zf-RING_5      zinc-RING finger domain
    0.00017   21.3   6.5    0.00044   19.9   6.5    1.8  1  zf-RING_11     RING-like zinc finger
     0.0017   18.1   3.6     0.0017   18.1   3.6    1.6  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.017   14.9   6.2      0.034   14.0   6.2    1.4  1  Prok-RING_4    Prokaryotic RING finger family 4
       0.26   11.6   0.1       0.26   11.6   0.1    2.5  3  zinc_ribbon_9  zinc-ribbon
       0.43   10.2   4.6       0.99    9.1   4.6    1.6  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
       0.58   10.3   4.2        1.8    8.7   1.3    2.3  2  DUF1272        Protein of unknown function (DUF1272)
       0.93    9.7   6.8        4.9    7.4   6.8    2.1  1  FANCL_C        FANCL C-terminal domain
        1.8    8.8   5.3        5.8    7.2   5.3    1.9  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING
        4.7    7.2  11.4       0.72    9.8   5.4    2.4  3  Prok-RING_1    Prokaryotic RING finger family 1
        8.3    6.4  10.8       0.37   10.7   5.3    1.7  1  PHD            PHD-finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   7.7   2.1e-13   2.3e-10       2      44 .]     263     311 ..     262     311 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.1e-13
   zf-RING_2   2 eCpICleel.....ssadsvl.llpCgHvfhreClerwlrssstCPlCr 44 
                 +C++C +++     +++d+++ +lpC H fh++C+  wl++s tCP+Cr
  CDO73110.1 263 DCAVCKDQFqlqteDPDDHIIiTLPCHHPFHQNCILPWLKNSGTCPVCR 311
                 7*****999765544444555266**777*******************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   8.1   4.8e-12   5.1e-09       2      55 .]     263     311 ..     262     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.8e-12
     zf-rbx1   2 tCaiCrneleeacieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 +Ca+C+ +++   ++ + p+d+ + ++l  C+H FH++Ci  Wlk++ +CP+cr
  CDO73110.1 263 DCAVCKDQFQ---LQTEDPDDH-IIITL-PCHHPFHQNCILPWLKNSGTCPVCR 311
                 7****97775...778888888.77766.************************8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   9.4   9.2e-10   9.7e-07       2      40 .]     264     310 ..     263     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 9.2e-10
  zf-C3HC4_2   2 CpiCldmlk....dpsvvt....pCgHvfCqkCilrsLeekneCPlC 40 
                 C++C d ++    dp + +    pC H f+q+Cil++L+++  CP+C
  CDO73110.1 264 CAVCKDQFQlqteDPDDHIiitlPCHHPFHQNCILPWLKNSGTCPVC 310
                 99***998643435533223447************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       8.1   8.5e+03       1       9 [.      11      19 ..      11      22 .. 0.72
   2 !   27.9   7.2   1.5e-09   1.6e-06       1      41 []     264     310 ..     264     310 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.1
                -TTT-S--S CS
    zf-C3HC4  1 CpiCleeak 9 
                C+ C  +++
  CDO73110.1 11 CASCNGTFV 19
                888887776 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.5e-09
                 -TTT-S--SS-E.........E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn........elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C++C++ ++ ++         +l+C+H f+++Ci+ +lk  ++ +CP+C
  CDO73110.1 264 CAVCKDQFQLQTedpddhiiITLPCHHPFHQNCILPWLK--NSGTCPVC 310
                 ********999999*************************..9999**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   7.9   3.8e-09     4e-06       1      39 []     264     308 ..     264     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.8e-09
  zf-RING_UBOX   1 CpIClelft....dP....lvl.pCGHtFCreClwelskslegafkCP 39 
                   C +C+++f+    dP    +++ pC+H F+++C+    ++l+++ +CP
    CDO73110.1 264 CAVCKDQFQlqteDPddhiIITlPCHHPFHQNCI---LPWLKNSGTCP 308
                   *************8889965544***********...999*******9 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.1   5.8e-09   6.1e-06      22      81 ..     262     314 ..     243     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 5.8e-09
                 SB-TTT-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  22 dvcGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtf 81 
                 + c +c+ +f+    + + p d+  ++   c+h fh+ cil wl+++   g cp+cr ++
  CDO73110.1 262 KDCAVCKDQFQL---QTEDPDDH-IIITLPCHHPFHQNCILPWLKNS---GTCPVCRYQL 314
                 568888888875...44556555.455567**************875...89*****765 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       7.3   7.7e+03       1       6 [.      10      15 ..      10      23 .. 0.68
   2 !   23.2   4.8   4.5e-08   4.7e-05       2      43 ..     264     311 ..     263     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.3
   zf-RING_5  1 hCnkCf 6 
                hC +C 
  CDO73110.1 10 HCASCN 15
                677775 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 4.5e-08
   zf-RING_5   2 CnkCfekl......skeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C +C +++       +++ +++++C+H f+++C+   l+++ +Cp+Cr
  CDO73110.1 264 CAVCKDQFqlqtedPDDHIIITLPCHHPFHQNCILPWLKNSGTCPVCR 311
                 *********9766555555****************************8 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   6.5   4.2e-07   0.00044       1      29 []     263     297 ..     263     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.2e-07
  zf-RING_11   1 eCsICLeefk.....pgqal.filpCsHtFHfkCI 29 
                 +C++C ++f+     p++ + ++lpC+H FH++CI
  CDO73110.1 263 DCAVCKDQFQlqtedPDDHIiITLPCHHPFHQNCI 297
                 8********986443344553788**********9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.6   1.7e-06    0.0017       3      45 ..     262     312 ..     260     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
                 SB-TTTSS.......SBS-..EEETTEEEEEE-HHHHHHHHHTT-B-TTT-- CS
  zf-C3HC4_3   3 eeCviCle.......rprn..vvllpCgHlvlCeeCaekllkrkkkCpiCrr 45 
                 + C +C++        p +  ++ lpC H  + ++C   +lk++ +Cp+Cr 
  CDO73110.1 262 KDCAVCKDqfqlqteDPDDhiIITLPCHHP-FHQNCILPWLKNSGTCPVCRY 312
                 68******666665535553266779****.9******************95 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.2   3.2e-05     0.034       1      41 [.     264     315 ..     264     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
  Prok-RING_4   1 CvlCgeq.........ekkailepCgHlvCkeCfdsk.dls.sCPlCqrris 41 
                  C +C+ q         ++ +i  pC H + ++C   + ++s +CP+C+ ++ 
   CDO73110.1 264 CAVCKDQfqlqtedpdDHIIITLPCHHPFHQNCILPWlKNSgTCPVCRYQLV 315
                  88898888888888655666668************9974447*****98875 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00025      0.26      20      35 .]       7      22 ..       1      22 [. 0.84
   2 ?   -2.9   0.4       8.3   8.8e+03       7      21 ..     266     280 ..     264     292 .. 0.56
   3 ?   -0.4   0.0       1.4   1.4e+03      23      28 ..     306     311 ..     298     315 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
  zinc_ribbon_9 20 sdvlCPhCgggFVEei 35
                   +d+ C +C+g FVE+i
     CDO73110.1  7 PDPHCASCNGTFVERI 22
                   6788**********87 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.3
  zinc_ribbon_9   7 qCdrfVsvspdedsd 21 
                     C+  +++++++ +d
     CDO73110.1 266 VCKDQFQLQTEDPDD 280
                    466666666665555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.4
  zinc_ribbon_9  23 lCPhCg 28 
                    +CP C+
     CDO73110.1 306 TCPVCR 311
                    7****8 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.6   0.00094      0.99       5      47 ..     262     309 ..     258     312 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00094
  Zn_ribbon_17   5 ksCayCelavk.......grvvlcgvCeHvlHasCarewfenddlaeCps 47 
                   k Ca+C+ + +         +++   C+H  H++C+  w++n     Cp+
    CDO73110.1 262 KDCAVCKDQFQlqtedpdDHIIITLPCHHPFHQNCILPWLKNSG--TCPV 309
                   66777753332111122246889999***************998..8886 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.24   2.6e+02      43      54 ..      10      21 ..       5      23 .. 0.87
   2 ?    8.7   1.3    0.0017       1.8       4      55 ..     260     318 ..     259     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.24
     DUF1272 43 vCPncgGelvkR 54
                +C  c+G +v+R
  CDO73110.1 10 HCASCNGTFVER 21
                799999999998 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0017
     DUF1272   4 lrpnCecCdkd..lppds.eearicsyEct..FCaeCaeevl..envCPncgGelvkRP 55 
                 l ++C  C+ +  l++++ ++ +i +  c   F ++C    l  +++CP c  +lv+ P
  CDO73110.1 260 LEKDCAVCKDQfqLQTEDpDDHIIITLPCHhpFHQNCILPWLknSGTCPVCRYQLVPQP 318
                 6789999988611444441456788999854499*****99944468*********999 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.8    0.0047       4.9       2      44 ..     261     304 ..     260     317 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0047
                 --S-SSS--SS-TT-----.B--S-TT----B-SGGGHHHHHHH CS
     FANCL_C   2 eveCgiCyayrldsgevpd.isCdnekCnkkfHsaCLkeWlrsl 44 
                 e++C +C  ++  + e pd        C ++fH++C+  Wl++ 
  CDO73110.1 261 EKDCAVCKDQFQLQTEDPDdHIIITLPCHHPFHQNCILPWLKNS 304
                 679999999987666666515677889**************975 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.3    0.0055       5.8      12      42 .]     284     310 ..     264     310 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0055
  zf-C3HC4_4  12 vsleCGhsfClsCisslqkepdgeqllCplC 42 
                 ++l+C h f ++Ci  + k++ g   +Cp+C
  CDO73110.1 284 ITLPCHHPFHQNCILPWLKNS-G---TCPVC 310
                 79**************99988.4...59999 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.5   3.7e+03       6      15 ..      10      19 ..       8      22 .. 0.79
   2 ?    9.8   5.4   0.00068      0.72       4      35 ..     261     297 ..     259     309 .. 0.80
   3 ?    0.6   0.1      0.54   5.7e+02       6      14 ..     306     314 ..     301     317 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.5
  Prok-RING_1  6 kCpvCgkelk 15
                 +C  C+ ++ 
   CDO73110.1 10 HCASCNGTFV 19
                 6999998885 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00068
  Prok-RING_1   4 gkkCpvCgkelkee.....dDiVvCpeCgtpyHraCy 35 
                  +k C vC+++++ +     d i++   C  p+H++C 
   CDO73110.1 261 EKDCAVCKDQFQLQtedpdDHIIITLPCHHPFHQNCI 297
                  689********977777857799999**********4 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.54
  Prok-RING_1   6 kCpvCgkel 14 
                   CpvC+ +l
   CDO73110.1 306 TCPVCRYQL 314
                  799999876 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.3   0.00035      0.37       2      49 ..     264     310 ..     263     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
                 BTTTTS.....TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTT CS
         PHD   2 CavCkk.....ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekC 49 
                 CavCk+     ++d +++++    C++ fHq+C+ p l+++       +C+ C
  CDO73110.1 264 CAVCKDqfqlqTEDPDDHIIITLPCHHPFHQNCILPWLKNSG------TCPVC 310
                 ******999966777999999999**********99887332......36666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 2886.33
//
Query:       CDO73111.1  [L=222]
Description: hypothetical protein BN946_scf185007.g165 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.001   19.7   0.0      0.003   18.2   0.0    1.7  2  SnoaL_2   SnoaL-like domain
     0.0022   18.3   0.0     0.0048   17.2   0.0    1.6  1  DUF2358   Uncharacterized conserved protein (DUF2358)
  ------ inclusion threshold ------
      0.017   14.9   0.0       0.11   12.3   0.0    2.0  2  SnoaL     SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     5e-07     0.003      14      54 ..      80     120 ..      69     129 .. 0.86
   2 ?   -2.3   0.0       1.2   6.9e+03      30      48 ..     183     201 ..     173     213 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5e-07
                 HHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEE CS
     SnoaL_2  14 dalaalfapdvvwedpggelrGreairaffralfaafpdlr 54 
                 +   +++ap++v++dp g  +G++ ira+f +l + fp+ +
  CDO73111.1  80 ESTYEIYAPNAVFHDPIGIADGIKSIRAQFNGLAKLFPRAD 120
                 566689*************************9999888765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                 TSEEESHHHHHHHHHHHHH CS
     SnoaL_2  30 ggelrGreairaffralfa 48 
                 + e++G +++  ++ + ++
  CDO73111.1 183 LRETTGEDGFVGMLNEHRK 201
                 5567788888877777764 PP

>> DUF2358  Uncharacterized conserved protein (DUF2358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     8e-07    0.0048       9     113 .]      72     176 ..      64     176 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8e-07
     DUF2358   9 edlpklFekeqdysiYsedviFedpltkfkglerYkkilallrflgrlf..fadvklellkitqse.eneikarWtlrgip.rlpwkpklvfdGlselk 103
                 e ++   + e +y+iY+++ +F+dp+   +g+++ +++   ++ l++lf     +++ ll+   s  + +i +   +  +  +    p+++++ l +l+
  CDO73111.1  72 ELYTS-QPTESTYEIYAPNAVFHDPIGIADGIKSIRAQ---FNGLAKLFprADIPSFRLLENPPSVpKSKILIDQDVDYYRdPKASSPTKTVNSLLTLE 166
                 33333.56677**********************99999...4555553300233455555444444566677777776665344467777777777777 PP

     DUF2358 104 lnkdglivsH 113
                  n++ +iv+H
  CDO73111.1 167 TNDQHQIVKH 176
                 7777777777 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11       3      58 ..      66     120 ..      64     133 .. 0.86
   2 ?    0.1   0.0      0.11   6.8e+02      34      54 ..     182     203 ..     166     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHTT-HHHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCTTCE CS
       SnoaL   3 vlrfyeevwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlk 58 
                 +l+  +e++ s+ ++   e++a++ v+h+p  + a+G++++ra+++ l k fP   
  CDO73111.1  66 ILQGIKELYTSQPTESTYEIYAPNAVFHDPI-GIADGIKSIRAQFNGLAKLFPRAD 120
                 667789999*******************665.********************9655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
                 T.TCECHHHHHHHHHHHHHHHC CS
       SnoaL  34 e.eparGlegfrafveelfkaf 54 
                 + ++++G +gf  +++e +k+f
  CDO73111.1 182 HlRETTGEDGFVGMLNEHRKKF 203
                 2477888899998888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1776.70
//
Query:       CDO73112.1  [L=1145]
Description: hypothetical protein BN946_scf185007.g166 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-31  110.0   0.0    2.4e-31  108.8   0.0    1.6  1  Lgl_C        Lethal giant larvae(Lgl) like, C-terminal
    3.2e-05   24.6   0.6        1.2   10.1   0.0    5.0  5  WD40         WD domain, G-beta repeat
    0.00036   20.8   0.0       0.13   12.6   0.0    4.1  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
          2    8.5   4.6       0.48   10.5   0.4    2.2  2  Malate_DH    Malate dehydrogenase enzyme


Domain annotation for each model (and alignments):
>> Lgl_C  Lethal giant larvae(Lgl) like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   5.3e-35   2.4e-31       3     391 ..     645    1055 ..     643    1060 .. 0.77

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 5.3e-35
                  -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---..S-SEEEEEE-BT CS
       Lgl_C    3 evksvslaaetlElavaletGeVvvfkfgknknfknkeksgaleleqkrlqlknskeklldisdrakpslkegflPvtllnlk..qgevsalkvSni 97  
                  +++++ +a ++lE++  +++G V++++ ++    +     ++            ++e+l+   +  +        P  +++ +  +g vsa+  S+ 
  CDO73112.1  645 RIEAIYFAPQSLECVAVMRSGAVILYRLDVPADEG---PVRQQA---------LHDEELVYLAHIPPRR-GLRYSPAFAIKPHkeRGLVSACSLSDA 728 
                  6999************************9987766...112222.........2366777777755544.333667777654434899********8 PP

                  ...SEEEEEETTSEEEEEETTTTEEEEEEEGGG..T-SS----EEE.....EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE CS
       Lgl_C   98 ...GFvAigyesgslviiDlRGPaviynenisekllskeksskvtt.....ieFsvmelggdgyssilllvGtnkGelltfkilPessGrfevefad 186 
                     GF A+gy sgsl+i+DlRGP +i+++  s +  s    ++++      + ++ + +  d   + +l+++t+ G + ++++  e    ++    +
  CDO73112.1  729 afeGFLAVGYTSGSLLIVDLRGPRIILRHAPSTHTSSGFLHKHTEVepflsLTWACCGMSSDPAVRLRLFCSTVSGATSIYALNYEPPSTWTILQSP 825 
                  778*************************88888555554444444444778******************************************9999 PP

                  EE.--SS---.-EEEEEETTT--B-B-BHHHHH....GGGG.T----EEEEEE-SSEEEEE-TT---EEEEE-.SS-EEEEEEEEEEEE-EEEEEEE CS
       Lgl_C  187 kt.aaddski.lkiasieketgesalAtiskmq....klsk.glvveglvvatskkdirvikpakskethksf.edellcsaisvvkteekkkgivl 275 
                  +t +    +i      ++++tg ++ A    ++    k+   + + + ++v+++ k++r+  +++ ++++k +     ++  i++v+++ek ++++l
  CDO73112.1  826 ATvEGPARPIpGGCFVLDAKTGMKCRADRYGLAtalqKVDMaEEARKFIWVMAGGKGVRCTLNINGERIAKAEwG--NKVGTIQHVEVVEKADSCAL 920 
                  99433344441334567**********7654443222654314455789*********************98744..4688899999999******* PP

                  EEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-...SSSEEEEEEEES----..........------B---TT------- CS
       Lgl_C  276 valtkdgevkvlslPsLkeikkvklpealdarrlsessilrnGdilvrl...gkleaallsvlgkskt........skeeeetdtlynekaaipprP 361 
                  va t+ g+v v++lP+L+ +++++l       ++   s + +Gd+++ +   g+  ++++  l  + +             + ++l +    +pp+P
  CDO73112.1  921 VAFTSLGNVLVYTLPHLELVHTMHLS---ALGSSDPPSTDDTGDFVTHTafpGPPGSSIRPLLSTELHtlfaqrrtGPYTLPLVDLAHGRGTVPPQP 1014
                  ************************94...4455666778899999988755566666666555555555554433366677889999********** PP

                  -..........--TTTS-SS.-----HHHHHHHHH-TT--- CS
       Lgl_C  362 q..........vsslqWirG.tqyvskedLdlLigGpnRpp 391 
                  q           s+l +i    +    +++d+L++Gp+Rp 
  CDO73112.1 1015 QpvslgppsviGSVLGYIGSfAAASAGDQIDKLLAGPDRPV 1055
                  **99999777445566665555566789***********74 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0071        32       3      37 ..      27      61 ..      26      61 .. 0.90
   2 ?    0.7   0.0      0.25   1.1e+03      10      37 ..     122     148 ..     113     149 .. 0.78
   3 !   10.1   0.0   0.00028       1.2      14      37 ..     250     273 ..     236     273 .. 0.91
   4 ?   -4.0   0.0         4   1.8e+04      18      32 ..     417     430 ..     404     432 .. 0.66
   5 ?    0.6   0.0      0.27   1.2e+03      14      36 ..     778     795 ..     757     795 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0071
                EEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGHssvtslafspdgawlasGsdDgtvriW 37
                +lrt++ H ++t++ ++p + +la G+  g+v+i+
  CDO73112.1 27 LLRTIEYHADITAVTTDPVSGLLAIGTAYGNVHIY 61
                5778888999****************99****997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.25
                 SSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 HssvtslafspdgawlasGsdDgtvriW 37 
                 + +v+++ +sp+++ ++ +  Dg v+ +
  CDO73112.1 122 Q-PVNAMVTSPSHSHVFVALADGEVKTY 148
                 3.799**********9999669999866 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00028
                 EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriW 37 
                 t+la +p+g+ la G  Dgt+ +W
  CDO73112.1 250 TALAIHPSGHILAVGYADGTIGFW 273
                 7999***********99****999 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 4
                 EETTSSEEEEEETTS CS
        WD40  18 fspdgawlasGsdDg 32 
                 f+++ + + +G++D+
  CDO73112.1 417 FPRSTPHF-AGHYDP 430
                 55566665.488786 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.27
                 EEEEEETTSSEEEEE.ETTSEEEE CS
        WD40  14 tslafspdgawlasG.sdDgtvri 36 
                  sl      +w ++G s D+ vr+
  CDO73112.1 778 LSL------TWACCGmSSDPAVRL 795
                 488......9*8888756**9997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.12   5.5e+02      40      84 ..      36      80 ..      23      88 .. 0.72
   2 ?   -1.2   0.0      0.57   2.6e+03      38      66 ..     121     149 ..     103     151 .. 0.83
   3 !   12.6   0.0   2.9e-05      0.13      41      71 ..     249     279 ..     245     303 .. 0.86
   4 ?    0.4   0.0      0.18   8.3e+02      50      74 ..     731     755 ..     708     784 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.12
  ANAPC4_WD40 40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84
                  ++++   p   lLa++++ g+v+++ +   +   +++  +  +v
   CDO73112.1 36 DITAVTTDPVSGLLAIGTAYGNVHIYGSPGVESRLQVTNPTGLRV 80
                 5667777777889************98766666655555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++ v+++  +p+ +   va +dgev+ +d
   CDO73112.1 121 GQPVNAMVTSPSHSHVFVALADGEVKTYD 149
                  67788888899999999********9987 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgk 71 
                   ++La +p+g++Lav+y+dg++ +   e+++
   CDO73112.1 249 ATALAIHPSGHILAVGYADGTIGFWALEDEE 279
                  6899******************998887765 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.18
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvh 74 
                  + +Lav+y  g++ ++d    +++ 
   CDO73112.1 731 EGFLAVGYTSGSLLIVDLRGPRIIL 755
                  5689*********999988766654 PP

>> Malate_DH  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00011      0.48       1      23 [.     373     395 ..     373     396 .. 0.96
   2 ?   -2.4   0.3       1.1     5e+03       3      12 ..     459     468 ..     458     469 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
   Malate_DH   1 mTsPQpaaskedlKeqqraaLRk 23 
                 +TsPQpa   + l  q raa+R+
  CDO73112.1 373 TTSPQPAGVAPPLHPQTRAAMRR 395
                 79********************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
   Malate_DH   3 sPQpaasked 12 
                 sPQ +++++d
  CDO73112.1 459 SPQISPANPD 468
                 9*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 7411.87
//
Query:       CDO73113.1  [L=552]
Description: hypothetical protein BN946_scf185007.g167 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.7e-193  642.8   0.0   4.2e-193  642.6   0.0    1.0  1  ICL         Isocitrate lyase family
    1.8e-09   37.4   0.0    3.3e-09   36.5   0.0    1.5  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  642.6   0.0  4.7e-197  4.2e-193       2     526 .]      29     552 .]      28     552 .] 0.98

  Alignments for each domain:
  == domain 1  score: 642.6 bits;  conditional E-value: 4.7e-197
                 HHXHHHHHTSGGGGG---SS-HHHHHHH--SS-.---THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH-S-EEE-HHHHHHH--TT.--- CS
         ICL   2 vaevkkwwsdsrwrktkrvysaedivskrGnlk.ieyasseqakklfklleeheaektasktfGaldpvqvtqmakyldtiyvsGwqssstasts.nep 98 
                 va++++++++sr++  kr+y+a +++sk+G++  +  +s+  a+kl+ l+e+  ae++  +t Ga+dpvq+tqma + + +yvsGw +ss  +t  n+ 
  CDO73113.1  29 VADMEAFFKQSRFSSLKRPYTAAQVASKQGSFPvLPLPSTLLANKLYALFEKAAAEGKPVHTMGAIDPVQMTQMAPHQEVVYVSGWACSSVLTTGnNDV 127
                 8999****************************96799*****************************************************998861578 PP

                 -SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT-------- CS
         ICL  99 spdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhma 197
                 +pdl dyp++tvpn+v+ lf aq+ hd+k  +er++++ e r++++++dylrpiiadad GhGGl+av+kl+klf e Ga+ ih+edq  g kkcGh+a
  CDO73113.1 128 GPDLGDYPYTTVPNQVHRLFRAQQLHDKKHYDERMNASPETRARMPYIDYLRPIIADADMGHGGLSAVMKLVKLFAESGASAIHLEDQLVGGKKCGHLA 226
                 *************************************************************************************************** PP

                 -EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE--TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SH CS
         ICL 198 GkvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGatnpdleeladllveaeaeGksGaelqaiedewlkkaglklfe 296
                 Gkvlvp + h+ rl+a+r q d+l+s +l++artd+e+a+l++st+d  dh+fi G++ pd   la+++++aea+G+sGae++ +e +wl++  l +f+
  CDO73113.1 227 GKVLVPASAHVSRLIAARFQLDMLKSTMLLIARTDAESAKLLSSTVDVLDHEFIKGVSSPDT-ALAEVISAAEAQGRSGAEIDKLEADWLARNPLCTFN 324
                 *************************************************************6.7*********************************** PP

                 HHHHHHHHTSS-S-HHHHHHHHHHHHTT--HH...HHHHHHHHHHSS----BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHHH CS
         ICL 297 eavvdeieksklsnkkelikkftkkvkplselsnkearklakellgkdiffdwelprvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqak 395
                 +a+ ++++ks++++k+ ++k + ++v+ +s   n  ar++a+++lg+ if+dw+lp++reGyy y Gg++++++r +afapyad+iw+e+klpd++qa+
  CDO73113.1 325 QAFEKALQKSSVKDKEGALKAYREAVDDKS---NAVARDVAEDILGERIFWDWDLPKTREGYYHYTGGVEAAIKRELAFAPYADMIWLETKLPDLEQAR 420
                 **************************9665...569*************************************************************** PP

                 HHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHH.HHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHT-GGGSHHH CS
         ICL 396 efaeGvkakvpeqklaynlspsfnwkkamsade.qetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqeeeidnGvdvvkhqk 493
                  f+  +++k+p +++ ynlspsfnw + + +d+  ++++  l+k G+v q+i+laGlh +a++s ++a  + ++Gm ay++ +q++e + G+dv++hqk
  CDO73113.1 421 YFSRKIREKYPGKWFVYNLSPSFNWAAQGFSDQaLKNFVWDLGKEGFVLQLISLAGLHLDAVASTELAARFKNEGMLAYVNLIQKKEKELGCDVLTHQK 519
                 ***************************99999878**************************************************************** PP

                 HHTHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 494 wsGaeyidellklvtGGvsstaamGkGvtedqf 526
                 wsGa+yid++l +v+ G sst+a+Gk  te+ f
  CDO73113.1 520 WSGANYIDRILTTVSAGSSSTSAVGKDSTEHSF 552
                 ******************************987 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   3.7e-13   3.3e-09      50     146 ..     132     262 ..      82     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.7e-13
  PEP_mutase  50 eelpleellaavraiaevvs...........................lPlivDledGygespeevaetvrrliaaGvvgvniEDk.....kknd.aerq 115
                  + p +++ + v++++++++                            P+i+D++ G+g   + v + v+ +++ G++++++ED+     k++  a++ 
  CDO73113.1 132 GDYPYTTVPNQVHRLFRAQQlhdkkhydermnaspetrarmpyidylRPIIADADMGHGG-LSAVMKLVKLFAESGASAIHLEDQlvggkKCGHlAGKV 229
                 555566666666666666656666666666666666666666666778**********99.99**********************99985555669999 PP

  PEP_mutase 116 lldieefaekiaaaraaaeeag..fvinARtda 146
                 l+++  +++++ aar + +  +  ++++ARtda
  CDO73113.1 230 LVPASAHVSRLIAARFQLDMLKstMLLIARTDA 262
                 99*************999998889********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3569.48
//
Query:       CDO73114.1  [L=1180]
Description: hypothetical protein BN946_scf185007.g168 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 7227.06
//
Query:       CDO73115.1  [L=319]
Description: hypothetical protein BN946_scf185007.g169 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2201.57
//
Query:       CDO73116.1  [L=923]
Description: hypothetical protein BN946_scf185007.g170 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-53  181.3  43.8    3.2e-53  180.9  43.8    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9  43.8   1.8e-57   3.2e-53       5     372 ..      49     432 ..      45     438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 1.8e-57
                     HHHHHHHHH..H.HHHTTSXHHHHHHHHHHHHTTTTTS.................HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHH CS
  Na_H_Exchanger   5 illallvgl..l.arrlklpeivgliiaGlllGpsglg.......lieps.....eedlevlselglilllFlaGleldlrelrknlksilllal 84 
                     ++++l++ l  l +rr ++p ++ +++ G++lGp  +g                    l++++++gl+l+lFl+G+e+d ++++++ + +l +a 
      CDO73116.1  49 GVILLISQLlsLvLRRMRQPRVISEVLGGIILGPTAFGripgftkH---IfpsdsRPYLNLVANIGLCLFLFLVGMEIDASMIKRHARYALTVAA 140
                     5555555555644*************************66664440...2666699*************************************** PP

                     HHHHHHHHHHHHHHH.H.....HT.XTTCHHHHHHH.HHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXT CS
  Na_H_Exchanger  85 lgvlitvvliGlllyll.....li.lgiplleallf.gailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeagg 172
                     +gv i++ + G++++ +     +i  ++ +++ +lf g+ +s+t ++v+ +il+e++++++ +g+++l+++v +D++++ lla+++al+    +g
      CDO73116.1 141 AGVCIPFGI-GTAIS-VpiyhtFIdKNVKFTQYMLFnGVSFSITAFPVLCRILTELKLLDTTVGIVVLSAGVGTDLIGWTLLALVVALV-NAGSG 232
                     *********.88888.4588886667788888766649999************************************************.88899 PP

                     SSSTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHHHHHHHH CS
  Na_H_Exchanger 173 etslllllliflvvavgglllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklseklesfre 266
                      t+l++ll+ + +++v+++++++ + wl+r++  +  + + l++ +++ll+++++++++++gv++i+gafl+G++++ e+++   l+ekle + +
      CDO73116.1 233 LTALWTLLVCIGWALVLIFIIKRPLLWLARRTGSTKNGPSMLFMTVTMLLLFGSSFFTDIIGVHAIFGAFLVGIIVPrEGGLTITLTEKLEDMVT 327
                     999999*****************************9*****************************************99999999********** PP

                     HHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTT CS
  Na_H_Exchanger 267 glfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyalli 361
                      +f+pl+F+l+Gls+dl++ln + + + + ++i ++  +g++ a  l++r+ g+++re+ +ig +++++g v l++++++ ++g+l++ ++++++
      CDO73116.1 328 IIFLPLYFALSGLSTDLTLLN-SGKIWGFTIAIAALDYAGKFGACSLASRFAGFTWRESTTIGSLMSCKGLVELIVLNVALSAGILSQRVFSMFV 421
                     ********************5.99*********************************************************************99 PP

                     CSTSXHHHHHH CS
  Na_H_Exchanger 362 vvvlftvlvqG 372
                     + +l+ ++  +
      CDO73116.1 422 LEALVLTFMTT 432
                     99999999333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6653.61
//
Query:       CDO73117.1  [L=217]
Description: hypothetical protein BN946_scf185007.g171 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1558.07
//
Query:       CDO73118.1  [L=280]
Description: hypothetical protein BN946_scf185007.g172 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-57  192.6   0.0    9.2e-57  192.2   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.8e-29  103.3   0.0    6.3e-29  101.5   0.0    1.7  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   0.0     1e-60   9.2e-57       3     250 ..      18     276 ..      17     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 192.2 bits;  conditional E-value: 1e-60
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC.....HHHHHHHC..CHHHHHHHHHHSSSEEEEE CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek.....akqallke..evlelwtklytvpkpviaa 94 
                 ++ v+++++nrP+ +Na+++++++++ ++l  ++d++ +  vv+tG ++aF+aGadl e  +++      ++q+ l      ++  ++ y++ kp+iaa
  CDO73118.1  18 QEHVMLLTFNRPKSLNAVTPTMTEDIKKVLDWFDDEPGLWIVVITGEGRAFCAGADLVEWNKRQAsggaeEDQKRLIRdvDGFASISRRYSSSKPMIAA 116
                 57899****************************************************9999887665542222222221134566778899******** PP

                 E-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHH.HCTSSSEEESGGGHHHHHHHHHHHHHH CS
       ECH_1  95 vnGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqeal.kvGlvdkvvpeeqlleealelaeklae 192
                 vnG a gGGle+ l cD+via+++a  +l+e+k G+++  gg ++lar+ G+++A e+lllgk+i+a++a+ + G v+kvvp+ ++l++al++a+++  
  CDO73118.1 117 VNGGAYGGGLEIILNCDLVIASEDAMLALPEVKRGVVAVQGGMPRLARIAGHQLASELLLLGKPITAKDAAtRFGFVNKVVPKTEVLSTALAWAAEITG 215
                 *********************************************************************75378************************* PP

                 SCHHHHHHHHHHHHHHHH..HHHHHH.HHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 193 kspaalrqlkealnakle..dalaeq.leaeaklfestfskddikeGlqaflEkrkpefed 250
                 +sp+a++  k al  + +  + + ++  ++++k  +  f +++i+eGl af Ekrkp +++
  CDO73118.1 216 NSPDAVQSTKRALLLAGRhgSVEDAViAHVNSKESKRAFTSENIQEGLRAFTEKRKPVWKN 276
                 ***********99766554444444415789999999**********************96 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0     7e-33   6.3e-29       2     239 ..      22     267 ..      21     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 7e-33
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THH..HHHHHHH..HHHHHHHHC-SS-EEEEE-B CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkee..eeffree..YklnyliatypkpvvalmdG 96 
                  ++t+nrpk+lNa++ +m +++k+ l+ +++++   +vv++g+g +afCAG D+++  + + +g +ee  ++++r+   ++  ++  + +kp++a ++G
  CDO73118.1  22 MLLTFNRPKSLNAVTPTMTEDIKKVLDWFDDEPGLWIVVITGEG-RAFCAGADLVEWNKRQASGGAEEdqKRLIRDVdgFASISRRYSSSKPMIAAVNG 119
                 5799**************************************88.*************999999555445888887611555555555689******** PP

                 EEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHH.HHTTS--EE--GGGHHHHH.HHHHTT..... CS
       ECH_2  97 ivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgada.laaglathyvpsekleale.eaLaelessde 192
                  + GgG+ + +++ + +++e++++A PE++ G++   Gg+  L+r+ g +l+  l l G+ ++++da   +g+ +++vp++++ + + +  ae++ ++ 
  CDO73118.1 120 GAYGGGLEIILNCDLVIASEDAMLALPEVKRGVVAVQGGMPRLARIAGhQLASELLLLGKPITAKDAaTRFGFVNKVVPKTEVLSTAlAWAAEITGNSP 218
                 *********************************************97769**************9972579********99864433033333333333 PP

                 ...--------......--.--SH.HHHHHHHHHHT.-S-TTTHHHHHH CS
       ECH_2 193 eaveevleelaeeaeeeee.esel.aekreaidrlfsadsveeiveaLe 239
                 +av+++ ++l  + ++ +  ++ + + + ++ +r+f +++++e ++a +
  CDO73118.1 219 DAVQSTKRALLLAGRHGSVeDAVIaHVNSKESKRAFTSENIQEGLRAFT 267
                 4444333333322222111112221234556666665555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2102.16
//
Query:       CDO73119.1  [L=143]
Description: hypothetical protein BN946_scf185007.g173 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-21   77.3   0.0    2.8e-21   76.5   0.0    1.3  1  DUF2431   Domain of unknown function (DUF2431)
  ------ inclusion threshold ------
      0.072   13.2   0.1       0.12   12.5   0.1    1.3  1  GHL6      Hypothetical glycosyl hydrolase 6


Domain annotation for each model (and alignments):
>> DUF2431  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   3.1e-25   2.8e-21       1      67 [.      64     137 ..      64     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 3.1e-25
     DUF2431   1 LlvGegdfSFarslv......eqh..kcenlvaTsydseeellekypqaeenieeLeeegvkvlfgVDatkleks 67 
                 Ll+Geg+fSFa +l+        +  +++n++aT+yd+eee+++kyp+a+e++ +L+e+gv+vlf+VDatkleks
  CDO73119.1  64 LLIGEGNFSFAHALAvfppegL-EflPPSNITATAYDTEEECYSKYPEAREIVTALREKGVEVLFHVDATKLEKS 137
                 8**************8877651.156899*******************************************974 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.4e-05      0.12      49      77 ..     112     140 ..      91     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
        GHL6  49 kelvkachregikvvvrvdfskaderiye 77 
                 +e+v+a++++g+ v+  vd++k++++++ 
  CDO73119.1 112 REIVTALREKGVEVLFHVDATKLEKSVIS 140
                 79**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1067.63
//
Query:       CDO73120.1  [L=422]
Description: hypothetical protein BN946_scf185007.g174 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-17   62.7   4.4    2.7e-06   28.0   0.3    4.7  4  WD40         WD domain, G-beta repeat
    5.4e-09   36.2   0.0    1.5e-08   34.8   0.0    1.7  1  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.1e-06     0.064       2      37 ..     176     213 ..     175     214 .. 0.83
   2 !   12.4   0.0   2.5e-05      0.22       6      36 ..     241     275 ..     236     277 .. 0.84
   3 !   28.0   0.3   3.1e-10   2.7e-06       3      38 .]     284     321 ..     282     321 .. 0.86
   4 !    6.4   0.1     0.002        18       7      37 ..     345     379 ..     340     380 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
                 EEEEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgaw.lasGsdDgtvriW 37 
                 +++++++GH+s v +++++   ++ +as +dD+ ++++
  CDO73120.1 176 EPTGVFRGHTSvVGDVDWHATEDYtFASVGDDKMLMLY 213
                 57899****7757***999999997666688**99986 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.5e-05
                 EEESSSS.EEEEEEETTSSE...EEEEETTSEEEE CS
        WD40   6 tltGHss.vtslafspdgaw...lasGsdDgtvri 36 
                  l +H+  + ++af p+ ++   +++Gs D+t+++
  CDO73120.1 241 QLQAHDReILAVAFTPNVDFphlILTGSSDKTIHL 275
                 57899336**************8789*88****97 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 3.1e-10
                 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 +++++++H + v ++a+sp+++ ++ s+s D+ + iWd
  CDO73120.1 284 PVHIFEAHtDEVLHVAWSPHNPTVFaSASSDRRINIWD 321
                 89******666************8525567*******9 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.002
                 EESS.SSEEEEEEETTSSEE.EEE..ETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawl.asG..sdDgtvriW 37 
                   GH    t++++ p  a   ++G  s+D+ v+iW
  CDO73120.1 345 HGGHtARPTDFCWAPGEAESwTAGstSEDNIVMIW 379
                 5678544788877777777335674458******* PP

>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.6e-12   1.5e-08      30      66 ..      24      64 ..      20      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.6e-12
                 EE-S-B--...-.EEEEEEEE----TTSS-EEEEEEEEEEE CS
  CAF1C_H4-bd 30 dwlPdtvs...s.lskqrllvGtqtsgkeqnylyvakvslp 66
                 +w+Pd+ +   + ++++rll+Gt+tsg+ q+yl++a v+lp
   CDO73120.1 24 EWFPDKETpanKpYTVHRLLLGTHTSGQAQDYLQIATVHLP 64
                 8****65668899**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2987.77
//
Query:       CDO73121.1  [L=89]
Description: hypothetical protein BN946_scf185007.g175 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   66.9   0.2    1.8e-18   66.7   0.2    1.1  1  ATP-synt_E  ATP synthase E chain
     0.0085   16.2   0.0     0.0097   16.0   0.0    1.1  1  Caudo_TAP   Caudovirales tail fibre assembly protein, lambda 


Domain annotation for each model (and alignments):
>> ATP-synt_E  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.2     2e-22   1.8e-18       7      94 ..       3      86 ..       1      88 [. 0.82

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2e-22
  ATP-synt_E  7 sPlinvlRysaLalGvvyGakrqrslkseekkeekereleaqekliekakaayakkkqakseakslaegssakiddedp....dilvavesa 94
                s ++nv+Ry+aL+ Gv+yG+ ++rsl++++++e k++ ++++e+li++ak+a + kkq+ s       ++ + +d+edp    ++l+a ++a
  CDO73121.1  3 STTVNVVRYTALLGGVFYGIVHRRSLQKAHDAEVKQHAIHEREHLIAEAKEAWK-KKQESS-------KDGVVTDPEDPrfdlEKLIAKWEA 86
                789**************************************************5.555555.......233345666666666888888776 PP

>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.1e-06    0.0097      59      99 ..      32      72 ..      13      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-06
   Caudo_TAP 59 kkeeqiqqAeqekqqllaqAseqiaplqdavdlgiatdeEk 99
                + +e  q A +e++ l+a+A+e+ ++ q+  + g +td E 
  CDO73121.1 32 HDAEVKQHAIHEREHLIAEAKEAWKKKQESSKDGVVTDPED 72
                37788999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 681.07
//
Query:       CDO73122.1  [L=389]
Description: hypothetical protein BN946_scf185007.g176 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-05   22.7   0.2      8e-05   22.7   0.2    3.6  4  INO80_Ies4      INO80 complex subunit Ies4
  ------ inclusion threshold ------
      0.012   15.9   5.0      0.036   14.4   5.0    1.8  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
      0.019   15.9   5.3      0.038   15.0   5.3    1.5  1  Spt5_N          Spt5 transcription elongation factor, acidic 
      0.025   14.9  12.0      0.048   14.1  12.0    1.3  1  CENP-B_dimeris  Centromere protein B dimerisation domain
       0.12   12.0   0.4        0.2   11.3   0.4    1.3  1  FAM176          FAM176 family
       0.41   10.7   3.1        1.8    8.6   2.5    1.9  2  RXT2_N          RXT2-like, N-terminal
        3.2    5.7   7.3        4.3    5.3   7.3    1.1  1  DNA_pol_phi     DNA polymerase phi
        6.2    7.6  12.2        2.2    9.0   8.9    1.8  2  FYDLN_acid      Protein of unknown function (FYDLN_acid)


Domain annotation for each model (and alignments):
>> INO80_Ies4  INO80 complex subunit Ies4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3  12.2         8   1.8e+04      50     132 ..      40     158 ..      14     176 .. 0.52
   2 ?   -1.7   3.6         1   2.3e+03      49      88 ..     166     209 ..     156     226 .. 0.55
   3 !   22.7   0.2   3.6e-08     8e-05     170     221 ..     260     311 ..     247     319 .. 0.81
   4 ?   -4.4   0.9       6.9   1.5e+04      73      89 ..     366     382 ..     347     388 .. 0.62

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 8
  INO80_Ies4  50 ekespasssaapaakaeskadnasdsnsatPa......egtPapssaamgppt...ekggpkkkagvKRsaaaa......................... 114
                  ++s a s+++ +a+a+s++d+  + + +  +      ++ P p++ + +pp     +g p+k++++ R+  ++                         
  CDO73122.1  40 GQSSKAGSTSSKHARADSDDDEDDEEDDEEDQliddddDEVPKPTP-SIPPPVapaARGSPAKRGSRGRGGVEVfetvpsesisaqepraevwdaiaae 137
                 3333333333333333333222222222111122333355555555.3333331113344444444444443335555566666666666667777777 PP

  INO80_Ies4 115 ...adgepaakvRgkPGPKKk 132
                    +++ p   +R kPGP K 
  CDO73122.1 138 rplTQSVPGLPARKKPGPPKG 158
                 777666677777888888775 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
  INO80_Ies4  49 eekespasssaapaakae..skadnasdsnsatPa..egtPaps 88 
                 ++k+s a + a + ak++  s +++ + +++++Pa  +g+P p 
  CDO73122.1 166 RKKSSKAGKGAVSLAKDDadSVSEAYAGTAPSSPAphDGSPEPD 209
                 44555555544444443323555555555555555556666665 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.6e-08
  INO80_Ies4 170 LDRsGkPCRkWekkglqlksFTGvvweiprWrappkkkpeeeeeesaaasas 221
                 LDRsG+P R+W + + +++   G  w + +W   ++++  +   +s+aa++s
  CDO73122.1 260 LDRSGRPVRRWRQVNREVRGIAGGRWFVKSWVGEKESEFATALAASQAAAQS 311
                 9********************************9998885554444444444 PP

  == domain 4  score: -4.4 bits;  conditional E-value: 6.9
  INO80_Ies4  73 sdsnsatPaegtPapss 89 
                   s + tP+ +tP    
  CDO73122.1 366 RASGPGTPSVETPPVVV 382
                 45667788877776554 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   5.0   1.6e-05     0.036      12      57 ..      39      82 ..      36     105 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
     PBP1_TM 12 kGkkakakparkkasrrrrrdddyddeyddeedDdddddeeeevpr 57
                kG+ +ka ++ +k +r    ddd dd  +d+e+D+  dd+++evp+
  CDO73122.1 39 KGQSSKAGSTSSKHAR-ADSDDDEDD-EEDDEEDQLIDDDDDEVPK 82
                6777755555555444.344666566.4555566554555555554 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   5.3   1.7e-05     0.038       5      34 ..      54      80 ..      52     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
                XXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
      Spt5_N  5 eAeVdddeeeeeeeeeveggeddfiaeeea 34
                 A++ddde++ee++ee++ ++dd+   +e 
  CDO73122.1 54 RADSDDDEDDEEDDEEDQLIDDDD---DEV 80
                69******9999999999998883...444 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  12.0   2.1e-05     0.048      12      45 ..      53      84 ..      40      92 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
  CENP-B_dimeris 12 sesesdeeeeeeeedeededeeddedddevpvps 45
                    + ++sd++e++ee+deed+    d+dddevp p+
      CDO73122.1 53 ARADSDDDEDDEEDDEEDQLI--DDDDDEVPKPT 84
                    233444444444444444333..66778887664 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   8.7e-05       0.2      62      90 ..      47      75 ..      30     116 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.7e-05
      FAM176 62 keesekasededeeeeeeeedsseseaee 90
                +++s++a  d+d++e++ee+d++++ +++
  CDO73122.1 47 STSSKHARADSDDDEDDEEDDEEDQLIDD 75
                22222333334444444444333333332 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.5   0.00081       1.8      61      83 ..      49      74 ..      23      88 .. 0.47
   2 ?    0.2   0.0       0.3   6.8e+02      66     104 ..     180     219 ..     140     226 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00081
      RXT2_N 61 ekeeeeedeegdeededdddee...e 83
                +++++  d+++de+de+dd+e+   +
  CDO73122.1 49 SSKHARADSDDDEDDEEDDEEDqliD 74
                22222223333333333332222221 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.3
      RXT2_N  66 eedeegdeededdddee.....eaeaaeenpykkvrleelLaPl 104
                  +d+ ++ ++      +     + ++++  p  ++ l+ lLaP 
  CDO73122.1 180 AKDDADSVSEAY----AgtapsSPAPHDGSPEPDIPLSSLLAPP 219
                 223333222222....13335678899999999********995 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.3    0.0019       4.3     657     682 ..      52      79 ..      32      92 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0019
  DNA_pol_phi 657 eededseedddeeesdedee..dedded 682
                  +   ds++d+d+ee+de+++  d+dd++
   CDO73122.1  52 HARADSDDDEDDEEDDEEDQliDDDDDE 79 
                  1222222222222222222222333332 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.9   0.00096       2.2      61     100 ..      44      80 ..      18      84 .. 0.54
   2 ?   -1.9   0.1       2.4   5.4e+03      74      74 ..     178     178 ..     148     203 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00096
  FYDLN_acid  61 eedeedeeeeedvsdedadeeeeedddddvdleedddddv 100
                 ++ +++++++ ++sd+d+d+ee   dd++++l +dddd+v
  CDO73122.1  44 KAGSTSSKHARADSDDDEDDEE---DDEEDQLIDDDDDEV 80 
                 2222333333333444444443...444556777777766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
  FYDLN_acid  74 s 74 
                 s
  CDO73122.1 178 S 178
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2800.37
//
Query:       CDO73123.1  [L=1595]
Description: hypothetical protein BN946_scf185007.g177 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-65  221.3   0.8    2.2e-64  217.5   0.0    2.7  3  Dopey_N       Dopey, N-terminal
  ------ inclusion threshold ------
      0.036   14.6   0.2         14    6.3   0.1    3.6  2  HEAT_EZ       HEAT-like repeat
       0.11   12.8   0.3       0.35   11.2   0.3    1.9  1  Cohesin_HEAT  HEAT repeat associated with sister chromatid co


Domain annotation for each model (and alignments):
>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0   3.7e-68   2.2e-64      86     306 ..       9     214 ..       2     215 .. 0.96
   2 ?   -2.7   0.1      0.41   2.4e+03     231     269 ..     882     921 ..     826     933 .. 0.74
   3 ?    0.8   0.1     0.035   2.1e+02     159     245 ..    1341    1426 ..    1332    1430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 3.7e-68
     Dopey_N  86 gseslskdlslylpGLlpllsyaslsvkpqlleliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekvgekyfyqclwlaiirs 184
                 +se l++dl+l+++GL+p+++yas+ vkp++l+l+++++lpL++ Lrp++k++il+lLpGLeee+ e+fe++l+ll++l  ++++++f+q++wl+i+++
  CDO73123.1   9 QSEGLQRDLALWSSGLFPFFEYASTAVKPTVLNLFDTHYLPLQAGLRPIMKSFILALLPGLEEETGEYFEKVLALLDRLAGTISQAFFFQNIWLVILTT 107
                 6789*********************************************************************************************** PP

     Dopey_N 185 psrRlgalkylskklpklkeveeeeekkeklsklseeaeallspepgllvrallatledenllvqRgiLDlLlshlpldsdvlqeklskedkellveaa 283
                 p  R  al+yls++lp +              k +e+++ +++++ gl++ra+ a+led++llv+R +LD+Ll+ l++d   +++ ++++d+++l++aa
  CDO73123.1 108 PPARGTALTYLSRRLPPF--------------KAEEDITPIVGDDIGLMIRAFSAALEDDDLLVRRAALDILLQSLRIDGVAVKK-AQSDDRAILMRAA 191
                 ******************..............4678999****************************************988887.************* PP

     Dopey_N 284 lklllrkDmSlnRRlwaWLlgpe 306
                 ++++lr+D++lnRRl+aWLlg++
  CDO73123.1 192 TSVVLRRDLALNRRLYAWLLGSA 214
                 *********************86 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.41
     Dopey_N 231 gllvrallatlede.nllvqRgiLDlLlshlpldsdvlqe 269
                  llv++l+ ++++  n     + LD+++ ++pl +++l+ 
  CDO73123.1 882 PLLVQTLVDGISSPaNRSLLQHWLDFITMTVPLFQETLRA 921
                 3677777777776666666778888888888887776665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.035
     Dopey_N  159 klleklkekvgekyfyqclwlaiirspsrRlgalkylskklpklkeveeeeekkeklsklseeaeallspepgllvrallatleden 245 
                  +ll k+ +  + ++f +  + +++rs + R   +++ls +  ++ ++   +++++ +++l + +  ++++e  l vr ll+ l+ +n
  CDO73123.1 1341 ELLGKITTVASANIFTNREYEMLLRSLNLRRLSYVMLSAEKNHFLAQ-LPSIQEKLVDTLRNVTAPIVQSEVYLCVRVLLCRLSPHN 1426
                  789999999999****************9999999999888777433.3445555777999999999***********999887665 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0024        14      29      50 ..     142     163 ..     118     165 .. 0.86
   2 ?    4.0   0.0     0.013        77      25      42 ..    1236    1253 ..    1228    1259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
     HEAT_EZ  29 ilpaLlalLnddsdeVRaaAag 50 
                 +++a+ a+L+dd+ +VR aA+ 
  CDO73123.1 142 MIRAFSAALEDDDLLVRRAALD 163
                 56788899999999*****986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
     HEAT_EZ   25 lvpeilpaLlalLnddsd 42  
                   v++++p L ++L+d+++
  CDO73123.1 1236 IVSDAIPGLRKFLMDSDK 1253
                  6899**********9886 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   5.9e-05      0.35      19      42 .]     142     165 ..     134     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
                   HHHHHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  19 vldtiarrltDsspsVRdAaLell 42 
                   ++ ++++ l+D +  VR AaL++l
    CDO73123.1 142 MIRAFSAALEDDDLLVRRAALDIL 165
                   78899*****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 10732.36
//
Query:       CDO73124.1  [L=283]
Description: hypothetical protein BN946_scf185007.g178 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-10   38.9   0.0     0.0015   18.3   0.0    2.5  2  EF-hand_6     EF-hand domain
      2e-08   33.4   0.2    1.5e-05   24.3   0.1    2.5  2  EF-hand_5     EF hand
      2e-07   31.4   1.6    2.5e-07   31.0   0.3    1.8  2  EF-hand_7     EF-hand domain pair
    8.1e-07   28.2   0.2    4.3e-05   22.8   0.0    2.4  2  EF-hand_1     EF hand
    0.00032   21.0   1.2     0.0041   17.4   0.1    2.5  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.067   13.1   0.0       0.33   10.8   0.0    2.0  2  EF-hand_8     EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.9e-07    0.0021       4      26 ..      52      74 ..      50      77 .. 0.92
   2 !   18.3   0.0     5e-07    0.0015       3      24 ..      95     116 ..      94     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.9e-07
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkal 26
                ++F+++D ++dG +d+eE+ +++
  CDO73124.1 52 SFFHIHDLNRDGVWDKEEIEAVY 74
                69*****************9875 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrk 24 
                 +e+ k +Dk+gdGki+  E+ +
  CDO73124.1  95 KEVLKRLDKNGDGKITLREFEA 116
                 68899***************87 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0017       5.2       9      24 ..      58      73 ..      52      74 .. 0.84
   2 !   24.3   0.1   4.9e-09   1.5e-05       2      24 ..      95     117 ..      93     118 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
                -SS-SSCE-HHHHHHH CS
   EF-hand_5  9 DlNgDGkIskeELktl 24
                DlN+DG  +keE +++
  CDO73124.1 58 DLNRDGVWDKEEIEAV 73
                *******9*9998875 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 4.9e-09
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 k++++++D+NgDGkI+  E++++
  CDO73124.1  95 KEVLKRLDKNGDGKITLREFEAV 117
                 4599****************975 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.3   8.4e-11   2.5e-07       7      68 ..      53     116 ..      49     117 .. 0.84
   2 ?   -2.3   0.0       2.1   6.2e+03      26      26 ..     171     171 ..     135     200 .. 0.57

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 8.4e-11
   EF-hand_7   7 aFkelDtdgdgyldkeellr..llrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  F  +D ++dg  dkee++   +l+ + q   e  k+ ++ +++++k +D+++dG+i++ EF++
  CDO73124.1  53 FFHIHDLNRDGVWDKEEIEAvyVLQPNEQDDIEHQKKAEHIVKEVLKRLDKNGDGKITLREFEA 116
                 4999***************987777766665555565666699*******************86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
   EF-hand_7  26 r 26 
                 +
  CDO73124.1 171 H 171
                 2 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.03        89       5      16 ..      53      64 ..      49      74 .. 0.82
   2 !   22.8   0.0   1.4e-08   4.3e-05       2      24 ..      94     116 ..      93     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.03
                HHHHHTTTSSSE CS
   EF-hand_1  5 iFrefDkDgdGk 16
                +F + D ++dG 
  CDO73124.1 53 FFHIHDLNRDGV 64
                7999*******6 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                 +ke+ + +Dk+gdGkI++ Ef +
  CDO73124.1  94 VKEVLKRLDKNGDGKITLREFEA 116
                 799******************75 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.4e-06    0.0041      39     110 ..      33     114 ..      14     116 .. 0.73
   2 ?   -2.8   0.1       2.6   7.6e+03      30      44 ..     165     179 ..     147     198 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
  SPARC_Ca_bdg  39 elekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl...........vklehCikpflescDadkdkkislkEw 110
                   + + ++  +++++ +  +   F+  D n+d+v++k+E+++++  l            k eh +k+ l++ D + d+ki+l+E+
    CDO73124.1  33 QYALRHMATEHHIDTFDIPSFFHIHDLNRDGVWDKEEIEAVYV-LqpneqddiehqKKAEHIVKEVLKRLDKNGDGKITLREF 114
                   5555556666666677777789999**************9986.411111111111466899********************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.6
  SPARC_Ca_bdg  30 reeekehleelekke 44 
                   + e+ eh++++e+ e
    CDO73124.1 165 HPEDIEHFAHHEAIE 179
                   333333333333333 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.71   2.1e+03      32      47 ..      54      69 ..      50      71 .. 0.78
   2 ?   10.8   0.0   0.00011      0.33      28      48 ..      94     114 ..      85     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.71
   EF-hand_8 32 frefDtdgdGkisfeE 47
                f  +D+++dG+ ++eE
  CDO73124.1 54 FHIHDLNRDGVWDKEE 69
                55689****9866665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00011
   EF-hand_8  28 vdilfrefDtdgdGkisfeEF 48 
                 v ++++++D +gdGki++ EF
  CDO73124.1  94 VKEVLKRLDKNGDGKITLREF 114
                 567899**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.58
# Mc/sec: 1465.67
//
Query:       CDO73125.1  [L=1824]
Description: hypothetical protein BN946_scf185007.g179 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.51
# Mc/sec: 10835.10
//
Query:       CDO73126.1  [L=518]
Description: hypothetical protein BN946_scf185007.g180 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0046   16.8   0.2     0.0083   16.0   0.2    1.4  1  Spt46     Spermatogenesis-associated protein 46


Domain annotation for each model (and alignments):
>> Spt46  Spermatogenesis-associated protein 46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   4.6e-07    0.0083      78     177 ..       9     113 ..       4     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.6e-07
       Spt46  78 daqngeqlr..rnctiyrpwf....spysyfvcadkeshleaysfpevqrdegrgdsclpedlaesvcssssspentcpreatkkarkgldsvdsitsq 170
                 d +++e lr  r+ t++ pw     +p+      d ++h++a s pe q  e  gd++l  dl  +v ++sss  +  p  a+k++ ++l  +d i + 
  CDO73126.1   9 DDDQSESLRktRSGTVFSPWAhifgTPWRAPHDFDLDAHVKAASQPEYQPYE-DGDTSLVHDLLSAVGAASSSRPDPLPSCAAKNKDATLPPADCIVFS 106
                 555666666336899999996222357777778899***********99876.69***************************************99887 PP

       Spt46 171 dilkask 177
                    +a++
  CDO73126.1 107 ASPMAAN 113
                 7666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3446.32
//
Query:       CDO73127.1  [L=961]
Description: hypothetical protein BN946_scf185007.g181 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-26   92.3   0.0    6.5e-26   91.3   0.0    1.3  1  KDZ            Kyakuja-Dileera-Zisupton transposase
    1.5e-14   54.4   0.1    2.9e-14   53.4   0.1    1.4  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> KDZ  Kyakuja-Dileera-Zisupton transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   7.2e-30   6.5e-26       3     143 ..      88     238 ..      87     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 7.2e-30
         KDZ   3 lllamDgNfslkrvakkseesadprltdgsdyflseeevdkfkdeveek............eeeeespCaerwkaaadeetkkmwkifdetGifavlCr 89 
                 + +amD+ fs+++ ++      d+  + + ++f+s+e+vd++ d +  +             e++ ++C+++++aa+++++k++ k fd+tG++a++Cr
  CDO73127.1  88 IHVAMDATFSQRHNTS----AGDSPWHYDAEFFISKEQVDAVGDRIALArkkgakpfssrvPEAALDECRKSFEAADEKKEKTTGKKFDDTGLMALVCR 182
                 579********97777....47777799****************9944444455665554444444********************************* PP

         KDZ  90 Hgfvllladmvksgelakyplalvskllevlgkd..lgigYDIgCqfkktlakssl 143
                 H++vl la+    ge++k+++al+++ ++ ++++  ++++YDIgC ++++++++s 
  CDO73127.1 183 HDIVLFLANVDTPGEQQKFAIALLEHFFSLVPDSamVAVLYDIGCVLDRSVHSRSR 238
                 *****************************9975544899************98876 PP

>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   3.2e-18   2.9e-14      77     202 ..     823     950 ..     808     957 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 3.2e-18
                    ..-GGG-SEEEEEEEC...TTEEEEEEEETCCCEEEEE-TTS-SSH.....HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSC CS
  Peptidase_C48  77 kedlfdkdiiyiPined..gkHWvlliinlpdktililDSlislht....vkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqkns 166
                      + + kd+ ++Pi+    + HW l++i  ++++i ++DS+++ +     v + +  + + +  ++ e  +++++ +++  +e   l ++p q ns
     CDO73127.1 823 RSQYWMKDVWLLPIHRLlpSGHWTLAVIYWKEGRIAYFDSMADRDVwerdV-QDVFSLSYRLHRIANERVQQDSDIPSYDGWEAYPLVETPLQTNS 917
                    5578899********7777**************************986633.3333455556667777778888888******************* PP

                    CCHHHHHHHHHHHHHCTHHCHHHHHSS.HHHHHHHH CS
  Peptidase_C48 167 gDCGiyvlkfiellaegapqessvtltekdvdsfrk 202
                    +DCG+ vl  i  l++g  + +   l+++d+++fr 
     CDO73127.1 918 YDCGVWVLACIAALLRGYHSVQ---LSQTDITRFRS 950
                    *****************99998...99*****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6572.99
//
Query:       CDO73128.1  [L=280]
Description: hypothetical protein BN946_scf185007.g182 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-10   39.9   0.2    6.4e-10   39.1   0.2    1.4  1  CxC1      CxC1 like cysteine cluster associated with KDZ tran
    3.9e-07   30.2   0.1    7.3e-07   29.3   0.1    1.4  1  CxC2      CxC2 like cysteine cluster associated with KDZ tran
  ------ inclusion threshold ------
      0.011   15.6   0.1       0.02   14.7   0.1    1.5  1  CxC4      CxC4 like cysteine cluster associated with KDZ tran


Domain annotation for each model (and alignments):
>> CxC1  CxC1 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.2   1.1e-13   6.4e-10      36     102 ..     193     259 ..     161     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.1e-13
        CxC1  36 krekvefCkCtpdavrllalGylasspvkpqtaFslpllilhnslWnkcnvgalpFtealkefleer 102
                  +++v+fC+C + + rl+++G +++sp +p++a s+ ll ++  l++++   +++ ++alk+f e r
  CDO73128.1 193 VSVQVSFCDCRNISRRLVSNGLFPTSPSQPRVAISIDLLDFYFALFERSADAVSALASALKTFYERR 259
                 56799***********************************************************998 PP

>> CxC2  CxC2 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   1.2e-10   7.3e-07      18      85 ..     172     238 ..     161     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.2e-10
        CxC2  18 Cpapee..aekdfvvidtngihevavdfCgCekakskrkQLLrarlfpatvkepktaatfevLeefhlls 85 
                 Cp+ +   +++ +  ++ + + +v+v+fC+C++     + L+  +lfp++ ++p+ a+++++L+ + +l 
  CDO73128.1 172 CPSGTCyvQTSLILCLHFDFLVSVQVSFCDCRNI---SRRLVSNGLFPTSPSQPRVAISIDLLDFYFALF 238
                 666665423444678999*************998...788***********************9886654 PP

>> CxC4  CxC4 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.4e-06      0.02      25     113 ..     173     259 ..     149     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-06
        CxC4  25 psrptlekectvytltgalevrielqrCpaCahtrrfiGpDlrelGlfnynn...svlfthellneytsaftasetpfsafvaavsrryees 113
                 ps++  +++  ++ l+  + v++++  C  C+     i + l + Glf  +    +v ++ +ll+ y   f++s  ++sa+ +a++  ye  
  CDO73128.1 173 PSGTCYVQTSLILCLHFDFLVSVQVSFCD-CR----NISRRLVSNGLFPTSPsqpRVAISIDLLDFYFALFERSADAVSALASALKTFYERR 259
                 45555667888899999999*********.*5....444456667***987522279****************************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2049.97
//
Query:       CDO73129.1  [L=1436]
Description: hypothetical protein BN946_scf185007.g183 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-66  224.2  53.4    3.8e-35  121.2  23.6    2.8  4  ABC2_membrane    ABC-2 type transporter
    1.1e-34  119.9   0.0    4.5e-16   59.6   0.0    2.4  2  ABC_tran         ABC transporter
    5.2e-23   80.8   0.0    3.9e-17   61.9   0.0    2.7  2  PDR_CDR          CDR ABC transporter
    5.6e-10   39.7   0.2    1.6e-09   38.2   0.2    1.8  1  ABC_trans_N      ABC-transporter N-terminal
    3.4e-05   24.4   0.0      0.031   14.8   0.0    2.8  2  AAA_18           AAA domain
    0.00015   22.1   0.5       0.24   11.7   0.2    2.9  2  AAA_22           AAA domain
      0.001   19.5   0.0       0.14   12.6   0.0    2.6  2  AAA_16           AAA ATPase domain
     0.0014   18.8   0.0          2    8.6   0.0    2.7  2  AAA_33           AAA domain
     0.0031   17.1   0.4       0.53    9.8   0.0    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0035   17.2   0.0       0.62    9.8   0.0    2.3  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0073   16.6   0.2       0.64   10.3   0.1    2.6  2  AAA_28           AAA domain
     0.0083   15.8   0.1      0.059   13.1   0.0    2.3  2  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.014   15.8   2.0        1.1    9.7   0.0    2.8  2  AAA_17           AAA domain
      0.017   14.9   0.0        2.5    7.7   0.0    2.4  2  AAA_30           AAA domain
      0.017   15.1   0.0      0.077   12.9   0.0    1.9  2  RsgA_GTPase      RsgA GTPase
      0.038   14.4   0.0        6.1    7.3   0.0    2.6  2  AAA              ATPase family associated with various cellul
      0.053   12.6  34.1     0.0072   15.5  13.2    2.6  2  ABC2_membrane_3  ABC-2 family transporter protein
      0.063   12.9   0.0       0.44   10.1   0.1    2.1  2  AAA_25           AAA domain
       0.11   11.9   0.1        3.1    7.2   0.0    2.6  3  SMC_N            RecF/RecN/SMC N terminal domain
       0.14   12.5   0.8         10    6.4   0.0    2.5  2  AAA_19           AAA domain
       0.18   11.5   0.0        9.6    5.9   0.0    2.5  2  AAA_24           AAA domain


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6  21.9   2.8e-37   2.4e-34       2     210 .]     457     666 ..     456     666 .. 0.97
   2 ?   -3.8   0.7       8.2     7e+03     124     144 ..     722     746 ..     717     750 .. 0.66
   3 !  121.2  23.6   4.4e-38   3.8e-35       2     209 ..    1125    1336 ..    1124    1337 .. 0.92
   4 ?   -3.8   0.1       8.5   7.2e+03      53      68 ..    1410    1425 ..    1396    1432 .. 0.52

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 2.8e-37
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    q++al+ r+f+ r++d++++ ++++    +lalv+g +++nl+ +s+++++r  ++f  +l+ a+ ++ ++ pv + +r++l++++ + ly+++a+
     CDO73129.1 457 QVRALVVRQFQMRLQDRFQL-VTSFSLSTILALVIGAAYYNLQlTSAGAFTRGSVIFAGLLTSALDTFGEM-PVQMLGRPILKKQTGYALYRPAAV 550
                    89******************.**********************9999999**************7777777.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlq 190
                    ++a++l+++p+s+  +li+ livyf+ +l ++   ff f l+++ ++l++ ++++ +++++++f+ a  la +++  ++l++G++ip+ +m++wl 
     CDO73129.1 551 AIANTLSDIPFSATRILIYDLIVYFMSNLSRTagGFFTFHLFAYGVFLTMQGFFRTFGVMCTNFDSAFRLAVFFIPNMVLYAGYMIPVFQMKRWLF 646
                    ********************************9888*******************************************************99*** PP

  ABC2_membrane 191 wiaylnPltyavealrsnlf 210
                    wi+y+nP++ya  + + n+f
     CDO73129.1 647 WIYYINPVAYAWVGCMENEF 666
                    ***********999999987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.2
  ABC2_membrane 124 gldls....rfflflllllltalaa 144
                    gl++s    r fl+ll ++l+++++
     CDO73129.1 722 GLNVSdlwrRNFLVLLGFFLLFQLT 746
                    6666666655578888888777665 PP

  == domain 3  score: 121.2 bits;  conditional E-value: 4.4e-38
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95  
                     q+++++ r+ ++ wr+p +  ++rl+ + +++l++ + f +lg+s   l++  + +f ++ l  + + ++ p+++  r+++ re +s++ys+ +
     CDO73129.1 1125 QLRWVVARNNMKLWRSPDYV-FSRLFVHAFISLFVSLSFLQLGHSVRDLQYRVFGIFWATILPAIVMGQLEPMWILSRRIYIREASSRMYSPYV 1217
                     999*****************.**********************7777777777777777777778999999*********************** PP

  ABC2_membrane   96 yvlakvlvelpvsllqalifllivyflvgldls....rf.flflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipids 184 
                     ++++++++e+p+sll+a+++++++++++g+        + f+ ll+++++ ++++slg +i+a++ps+++a ++ ++++l+l  ++G+ ip+++
     CDO73129.1 1218 FAIGQLIGEMPYSLLCAVVYWVLMVYPMGFGHGaagvGGtFFQLLVIVFVEIFGVSLGQFIGAISPSMQVAPLFNPFIILVLSTFCGVTIPYPT 1311
                     **********************666666****99654238****************************************************** PP

  ABC2_membrane  185 mpkwlqwiaylnPltyavealrsnl 209 
                     +  +++w+++l+P+t +++a++s++
     CDO73129.1 1312 LATYWRWLYQLSPYTRLTSAMVSTE 1336
                     *77******************9987 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 8.5
  ABC2_membrane   53 pgllffsvlflafsal 68  
                     +++lf +++f+ ++++
     CDO73129.1 1410 VWVLFAFAVFNLIATI 1425
                     3444444444443333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   1.7e-18   1.5e-15       8     136 ..     136     290 ..     130     291 .. 0.92
   2 !   59.6   0.0   5.3e-19   4.5e-16       1     137 []     833     979 ..     833     979 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.7e-18
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......................es 81 
                 lk+ge+  ++G  GaG++t+lk++a+++k+     G++++ g d +e   + ++ e+ + ++++q+  +ltv+++                      e 
  CDO73129.1 136 LKPGEMCLVLGCPGAGCTTFLKTIANEHKDyarVLGDVRYAGIDAHE-MAKYYKGEVVYNEEDDQHIATLTVGQTinfalslktpgphgrlpgmtrkEF 233
                 89*************************99976677*********999.99******************************************9998755 PP

                 HTC.HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 dee.iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++   + +l+ l+++++++t v+++  + +SgG+++rv++a+++++++ +l++D+ t
  CDO73129.1 234 NQAvRDMLLKMLNISHTANTYVGDEFvRGVSGGERKRVSIAEMMATRAHVLCFDNST 290
                 555356678899**********99999***************************987 PP

  == domain 2  score: 59.6 bits;  conditional E-value: 5.3e-19
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81 
                 l++v   +k+g+++a++G +GaGK+t l +la+  +    +G++lldgk+lk      + ++ ++ +q + +    tvre                 e+
  CDO73129.1 833 LHDVYGYVKPGTMTALMGASGAGKTTCLDVLAQRKNIgvVSGTLLLDGKPLKL----DFARKTAYAEQMDVHEGSATVREAmrfsaylrqppeiskeEK 927
                 57788899************************99988889************9....999999******************************999777 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 d+ +e++++ l+l++l+d  v     sL    ++r+ +   l+++p+ll+lDEpt+
  CDO73129.1 928 DQYVEDMIEVLELQDLADALV----LSLGVEARKRLTIGVELASRPELLFLDEPTS 979
                 777****************99....666666899********************96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   4.6e-20   3.9e-17       5      89 ..     687     772 ..     679     775 .. 0.91
   2 !   15.8   0.2   1.1e-05    0.0094      39      74 ..    1399    1434 ..    1387    1436 .] 0.85

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 4.6e-20
     PDR_CDR   5 pgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlw.rnfgiliaflifflalyllatelisaekskgevlvfkrgkap 89 
                  +y +    n+vC++ G++pGq++VsG +Y++  fg++ s+lw rnf +l++f+++f ++++l++e++ +  +++ v+++  + a 
  CDO73129.1 687 DKYPDGLGPNQVCTLFGSIPGQDIVSGRNYVNVGFGLNVSDLWrRNFLVLLGFFLLFQLTQVLLIEYFPQYGGGSAVTIYAPEDAD 772
                 567877899**********************************66***********************************988776 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.1e-05
     PDR_CDR   39 fgyssshlwrnfgiliaflifflalyllatelisae 74  
                  ++ +++++wr++ +l+af++f l+++++a+ +++ +
  CDO73129.1 1399 LNIRYEDRWRDVWVLFAFAVFNLIATIVASRFLRYA 1434
                  677899***********************9998765 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.2   1.9e-12   1.6e-09       1      69 [.      35     108 ..      35     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.9e-12
  ABC_trans_N   1 eLartlsrqssssssssss....e...sssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvg 69 
                  eL+r ls++s++ +s+  +    e   +  e+ ee  s Fdl+++l++  ++ +++gi ++++GV+++nL V  vg
   CDO73129.1  35 ELERALSVRSRQADSDGTDhptkErdvEAGEKREE--SAFDLKAYLSSSNDAYQKAGIAHKHVGVTWENLEVDVVG 108
                  799****9766555554445543142333333333..45********************************97655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014        12       2      25 ..     143     171 ..     143     205 .. 0.66
   2 !   14.8   0.0   3.7e-05     0.031       3      93 ..     848     945 ..     847     973 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf....g 25 
                 l+ G+pG+G tt+ k +++++  +    g
  CDO73129.1 143 LVLGCPGAGCTTFLKTIANEHkDYarvlG 171
                 589**************999745533330 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 3.7e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss.......aleegknlvidghlaeleseaakd 93 
                 l+G++G+GKtt  + L++r ++gv+++ ++ ++ +l  +++ ++   +++d +   + +++ ++ s+        + e+k+ ++++ ++ le  ++ d
  CDO73129.1 848 LMGASGAGKTTCLDVLAQRKNIGVVSGTLLLDGKPLKLDFARKTAYAEQMDVHEGSATVREAMRFSAylrqppeISKEEKDQYVEDMIEVLELQDLAD 945
                 89****************9888*****************99966666666666666666666666667777777555555557787777777766666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0059         5       6      32 ..     140     166 ..     136     225 .. 0.87
   2 !   11.7   0.2   0.00028      0.24       5      43 ..     843     872 ..     840    1010 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0059
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldee 32 
                  +++v G++G+G Tt l++++++++ +
  CDO73129.1 140 EMCLVLGCPGAGCTTFLKTIANEHKDY 166
                 6899******************99654 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00028
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                  ++++++G sG+GKTt+l  l++++         + +vv
  CDO73129.1 843 GTMTALMGASGAGKTTCLDVLAQRK---------NIGVV 872
                 6899***************999998.........44444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.069        59      25     127 ..     140     241 ..     132     259 .. 0.58
   2 !   12.6   0.0   0.00016      0.14      11      69 ..     832     883 ..     829    1002 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.069
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif....lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.....avpelaga 114
                 e++l+ G +G G ++ +++++++ ++  + +     ++        i     a++ + e ++++++d++ +  l    +++  al+     + + l+g 
  CDO73129.1 140 EMCLVLGCPGAGCTTFLKTIANEHKDY-ARVlgdvRYAG-------IDAHEMAKYYKGEVVYNEEDDQHIA-TLT-VGQTINFALSlktpgPHGRLPGM 228
                 89*******************755543.33322312222.......2223456666665555555555333.222.22222222223455566666666 PP

      AAA_16 115 easrllellkrll 127
                  ++ ++++++++l
  CDO73129.1 229 TRKEFNQAVRDML 241
                 6666666666665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00016
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                  L+++++ v+ g   ++ l G+sG GK++ ++ l++   ++++ +++g+      + p+
  CDO73129.1 832 LLHDVYGYVKPG--TMTALMGASGAGKTTCLDVLAQ---RKNIGVVSGTLLLD--GKPL 883
                 457778777777..7999**************9996...55577777666665..3333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0056       4.8       2      33 ..     142     187 ..     141     255 .. 0.72
   2 !    8.6   0.0    0.0023         2       3      29 ..     847     873 ..     845     929 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0056
      AAA_33   2 vllvGlpGsGKstlaerllkklg.avllssdt.............l 33 
                  l+ G pG+G +t+++ ++++++ + ++  d+             +
  CDO73129.1 142 CLVLGCPGAGCTTFLKTIANEHKdYARVLGDVryagidahemakyY 187
                 5789******************9*9999999866666655444432 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0023
      AAA_33   3 llvGlpGsGKstlaerllkklgavlls 29 
                  l G++G+GK+t ++ l+++    ++s
  CDO73129.1 847 ALMGASGAGKTTCLDVLAQRKNIGVVS 873
                 578**************9988855554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00062      0.53       4      48 ..     143     185 ..     140     208 .. 0.82
   2 ?    5.1   0.2     0.018        15       2      28 ..     845     868 ..     844     886 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00062
                 EEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHC CS
        cobW   4 vltGflGsGKTtLlnhllenraglklavivNefgevsiDaellre 48 
                 ++ G +G+G Tt+l+++ ++  ++++a +++++   +iDa+ +++
  CDO73129.1 143 LVLGCPGAGCTTFLKTIANE--HKDYARVLGDVRYAGIDAHEMAK 185
                 6889************9965..889999***********998865 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.018
                 EEEEEESTTCCHHHHHHHHHCT--SS- CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglk 28 
                 +t l G  G+GKTt l  l ++   ++
  CDO73129.1 845 MTALMGASGAGKTTCLDVLAQR---KN 868
                 57899***********998866...33 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.014        12       1      82 [.     845     922 ..     845     969 .. 0.58
   2 !    9.8   0.0   0.00073      0.62     253     296 ..     967    1006 ..     941    1013 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.014
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersq 82 
                 +++l G+ g+GK++ Ld l      ++++     +l   g++ k ++   + + e+ +++e + ++ + +r++  lr+  ++
  CDO73129.1 845 MTALMGASGAGKTTCLDVLAQ----RKNIGVVSGTLLLDGKPLKLDFARKTAYAEQMDVHEGSATVREAMRFSAYLRQPPEI 922
                 689****************44....444444444444444555555555555555555555555555555555555555555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00073
      AAA_21  253 ralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                  +    + ll++DEp +gL+ +    l+++l++l++ ++Q il T
  CDO73129.1  967 S---RPELLFLDEPTSGLDGQSAWNLVRFLRKLAD-NGQAILCT 1006
                  2...239***********************99999.77776655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.092        79       3      23 ..     143     165 ..     141     187 .. 0.81
   2 !   10.3   0.1   0.00074      0.64       3      27 ..     847     872 ..     845     883 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.092
      AAA_28   3 vitGgestGKTtlleaLaar..g 23 
                  ++G++++G Tt l+ +a++  +
  CDO73129.1 143 LVLGCPGAGCTTFLKTIANEhkD 165
                 589**************964343 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00074
      AAA_28   3 vitGgestGKTtlleaLaar.gypvv 27 
                 +++G++++GKTt l  La+r ++ vv
  CDO73129.1 847 ALMGASGAGKTTCLDVLAQRkNIGVV 872
                 799***************99666555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.5   1.3e+03      21      39 ..     138     156 ..     135     161 .. 0.82
   2 !   13.1   0.0   6.9e-05     0.059      22      42 ..     843     863 ..     834     865 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 + +++l+ G  G+G +T+l
  CDO73129.1 138 PGEMCLVLGCPGAGCTTFL 156
                 45699************98 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.9e-05
      AAA_29  22 kgatlltGpsGsGKSTllDAi 42 
                   +t l+G+sG+GK+T lD +
  CDO73129.1 843 GTMTALMGASGAGKTTCLDVL 863
                 449****************65 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.038        32       1      39 [.     145     183 ..     145     211 .. 0.72
   2 ?    9.7   0.0    0.0013       1.1       2      31 ..     850     878 ..     849     912 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.038
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl 39 
                 lG PG+G +t +++++ + +      Gd+ ++ +   ++
  CDO73129.1 145 LGCPGAGCTTFLKTIANEHKDYARVLGDVRYAGIDAHEM 183
                 79**************98866666667776666655555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0013
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllr 31 
                 G  G+GK+t ++ l+++ ++ ++s G ll 
  CDO73129.1 850 GASGAGKTTCLDVLAQRKNIGVVS-GTLLL 878
                 99**********************.88886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.028        24      18      45 ..     139     166 ..     133     189 .. 0.83
   2 ?    7.7   0.0     0.003       2.5      19      40 ..     844     865 ..     839    1004 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.028
      AAA_30  18 drvavltGpAGtGKttalkalreaweaa 45 
                   ++++ G +G+G tt lk++++ +++ 
  CDO73129.1 139 GEMCLVLGCPGAGCTTFLKTIANEHKDY 166
                 458999***************9888765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.003
      AAA_30  19 rvavltGpAGtGKttalkalre 40 
                  +++l G+ G+GKtt l +l++
  CDO73129.1 844 TMTALMGASGAGKTTCLDVLAQ 865
                 58999************99976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2   1.9e+03     100     123 ..     140     163 ..     135     174 .. 0.84
   2 ?   12.9   0.0     9e-05     0.077      95     125 ..     838     869 ..     795     879 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
                  SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpel 123
                  ++++++G  G+G +t+++++++e+
   CDO73129.1 140 EMCLVLGCPGAGCTTFLKTIANEH 163
                  788999*************99875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9e-05
                  HHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  95 ellkd.ktsvlvGqSGvGKStLinallpelel 125
                   ++k   +++l+G SG+GK+t +++l++++++
   CDO73129.1 838 GYVKPgTMTALMGASGAGKTTCLDVLAQRKNI 869
                  555555899*****************998554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0071       6.1       2      38 ..     143     187 ..     142     205 .. 0.75
   2 ?    4.3   0.0      0.06        51       3      24 ..     848     869 ..     846     912 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0071
                 EEESSTTSSHHHHHHHHHHHHT........HEEEEEETTTCSSSS CS
         AAA   2 llyGppGtGKTllakavakelg........vefleisgsellsky 38 
                 l+ G pG G T++ k +a+e +        v++  i+++e+ + y
  CDO73129.1 143 LVLGCPGAGCTTFLKTIANEHKdyarvlgdVRYAGIDAHEMAKYY 187
                 899*****************6433333335888888888888444 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.06
                 EESSTTSSHHHHHHHHHHHHTH CS
         AAA   3 lyGppGtGKTllakavakelgv 24 
                 l+G  G GKT++   +a+  ++
  CDO73129.1 848 LMGASGAGKTTCLDVLAQRKNI 869
                 89***************98544 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  12.8     0.077        66     201     314 ..     546     662 ..     543     745 .. 0.70
   2 ?   15.5  13.2   8.4e-06    0.0072     166     315 ..    1176    1334 ..    1158    1426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.077
  ABC2_membrane_3 201 splqywlskilgdflvyllqlllilllafglgipfg.nlglll...llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpl 290
                      +p++  +++ l+d   +++ +l++ l+++  + + +   g ++   l+    +l++  ++  ++++++n ++a+ l++++i  + ++ g+++p+
       CDO73129.1 546 RPAAVAIANTLSDIPFSATRILIYDLIVYF-MSNLSrTAGGFFtfhLFAYGVFLTMQGFFRTFGVMCTNFDSAFRLAVFFIPNMVLYAGYMIPV 638
                      577788999999999999999999666555.23333433333310355555555555555557899******9999999888788888888889 PP

  ABC2_membrane_3 291 edlpsalkwifsiiPffapglgll 314
                       ++  +l wi +i+P  +  +g +
       CDO73129.1 639 FQMKRWLFWIYYINPVAYAWVGCM 662
                      99*************998777754 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 8.4e-06
  ABC2_membrane_3  166 liliilifitasfiavsi....veEkesrikelqlvsgvsplqywlskilgdflvyllqlllill.lafglgipfg....nlglll..llfl 246 
                       ++ i++++i +++++  +    +  ++  i+e    +  sp+ + ++ ++g +  +ll+++++ + +++   + fg    ++g ++  ll++
       CDO73129.1 1176 VFGIFWATILPAIVMGQLepmwILSRRIYIREASSRM-YSPYVFAIGQLIGEMPYSLLCAVVYWVlMVYP--MGFGhgaaGVGGTFfqLLVI 1264
                       4667777777777776333333555777788888888.9********************99965515777..66665566666666686666 PP

  ABC2_membrane_3  247 lf.glayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllr 315 
                       +f  +  ++lg ++++++ ++  a ++ +++il+ls f+g+++p ++l+++++w+  + P + ++ ++++
       CDO73129.1 1265 VFvEIFGVSLGQFIGAISPSMQVAPLFNPFIILVLSTFCGVTIPYPTLATYWRWLYQLSPYTRLTSAMVS 1334
                       6647899******************************************************999999976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   9.1e+02      28      51 ..     134     157 ..     124     202 .. 0.86
   2 ?   10.1   0.1   0.00052      0.44      26      54 ..     836     864 ..     828     871 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
      AAA_25  28 gllpagelallaGapgtGKttlal 51 
                 gll  ge +l+ G pg+G tt++ 
  CDO73129.1 134 GLLKPGEMCLVLGCPGAGCTTFLK 157
                 89999***************9985 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00052
      AAA_25  26 vkgllpagelallaGapgtGKttlaldla 54 
                 v g++  g+ ++l+Ga+g+GKtt +  la
  CDO73129.1 836 VYGYVKPGTMTALMGASGAGKTTCLDVLA 864
                 5688999****************987766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   8.9e+02     135     155 ..     250     281 ..      34     322 .. 0.78
   2 ?    0.7   0.0      0.35     3e+02      25      44 ..     844     863 ..     835     876 .. 0.90
   3 ?    7.2   0.0    0.0036       3.1     158     200 ..     968    1010 ..     914    1026 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
                 T...........CS-HHHHHHHHHHHHHHHHC CS
                 x...........xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...........lLSgGektLvalaLlfAiqk 155
                 +             SgGe++ v++a ++A+++
  CDO73129.1 250 TantyvgdefvrGVSGGERKRVSIAEMMATRA 281
                 25555555555567999999999999988653 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                  +ta++G+ G+GK+  ld +
  CDO73129.1 844 TMTALMGASGAGKTTCLDVL 863
                 589***********999865 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0036
                  --SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  158 paplyllDeidaaLDeknvkkvaellkeksknaQfivislree 200 
                  +  l +lDe  + LD +   +++++l++  +n Q i  ++++ 
  CDO73129.1  968 RPELLFLDEPTSGLDGQSAWNLVRFLRKLADNGQAILCTIHQP 1010
                  445789*******************************999876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012        10      10      38 ..     139     167 ..     136     187 .. 0.87
   2 ?    3.5   0.5     0.095        81      11      31 ..     844     864 ..     838     997 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelg 38 
                  +++lv++ pG G T+ lk+i ++ ++  
  CDO73129.1 139 GEMCLVLGCPGAGCTTFLKTIANEHKDYA 167
                 5789****************998877665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.095
      AAA_19  11 kvllvtaGpGtGKTrvlkhiv 31 
                 ++ ++++  G GKT++l    
  CDO73129.1 844 TMTALMGASGAGKTTCLDVLA 864
                 678899*********997654 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.097        83       4      42 ..     141     182 ..     139     209 .. 0.66
   2 ?    5.9   0.0     0.011       9.6       4      22 ..     845     863 ..     843     928 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.097
      AAA_24   4 kiliyGpsgiGKTtlakel...gpkplfidtekGlksldadk 42 
                 ++l+ G +g+G Tt++k++    ++ + +  +  ++ +da++
  CDO73129.1 141 MCLVLGCPGAGCTTFLKTIaneHKDYARVLGDVRYAGIDAHE 182
                 6899**************976655555555555555555555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.011
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 + +++G sg+GKTt++  l
  CDO73129.1 845 MTALMGASGAGKTTCLDVL 863
                 6789**********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.00u 0.33s 00:00:01.33 Elapsed: 00:00:00.50
# Mc/sec: 8694.68
//
Query:       CDO73130.1  [L=123]
Description: hypothetical protein BN946_scf185007.g184 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-19   68.1  11.5    6.6e-19   67.8  11.5    1.1  1  Prefoldin_2    Prefoldin subunit
     0.0013   18.6   5.7     0.0017   18.2   5.7    1.1  1  Mei5           Double-strand recombination repair protein
     0.0069   16.6   1.8     0.0069   16.6   1.8    2.1  2  Tropomyosin_1  Tropomyosin like
  ------ inclusion threshold ------
       0.01   15.9  11.9      0.063   13.3   1.3    2.2  2  DHR10          Designed helical repeat protein 10 domain
      0.021   15.1   9.8       0.05   13.8   9.6    1.6  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
      0.025   13.6   2.1      0.029   13.4   2.1    1.2  1  BPS1           Protein BYPASS1-related
       0.04   11.4   6.9      0.054   11.0   6.9    1.2  1  DUF3584        Protein of unknown function (DUF3584)
       0.11   11.9   4.8        0.2   11.0   1.4    2.0  2  FliD_C         Flagellar hook-associated protein 2 C-terminus
       0.14   12.7  14.7        1.5    9.3  14.7    2.0  1  APG6_N         Apg6 coiled-coil region
       0.25   10.5   6.1        2.7    7.1   1.0    2.0  2  NCA2           ATP synthase regulation protein NCA2
       0.34   11.2   5.3       0.47   10.7   5.3    1.3  1  Herpes_UL14    Herpesvirus UL14-like protein
       0.85    9.5  15.5       0.45   10.4   4.6    2.6  3  Prefoldin      Prefoldin subunit
        1.1   10.4   4.1        0.6   11.2   0.8    1.9  2  DUF5320        Family of unknown function (DUF5320)
        1.1    9.3  10.2       0.78    9.9   2.4    2.3  2  DUF148         Domain of unknown function DUF148
        1.5    9.1   5.1        2.3    8.5   0.2    2.7  3  Coat_F         Coat F domain
        1.7    7.4   3.2        2.1    7.1   3.2    1.0  1  LMBR1          LMBR1-like membrane protein
        2.4    8.6   6.2        3.5    8.0   6.2    1.4  1  PRP1_N         PRP1 splicing factor, N-terminal
        2.9    7.7  14.2       0.63    9.9   3.6    2.4  2  DivIC          Septum formation initiator
        4.7    6.4  12.6        5.3    6.3   2.3    2.0  2  DUF3450        Protein of unknown function (DUF3450)
        6.3    6.9   9.6         12    6.1   2.1    2.5  2  DUF5595        Domain of unknown function (DUF5595)
        7.1    5.9   8.3         28    4.0   8.3    1.8  1  DUF4407        Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8  11.5   7.7e-22   6.6e-19       3     105 ..      16     118 ..      14     119 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 7.7e-22
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   3 linkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelq 100
                  ++    q+q  l    qqi+ +e++ + l+l++ee+ +l ed + yk vG+++++++++ ++++L++++++l++ ik+lek+ ++lek++++ +++l+
   CDO73130.1  16 IQQTAVQSQRALNVSRQQIAAKERERRILQLTIEEITSLQEDVNLYKGVGKMFMQVPRPAMEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLR 113
                  66777899999999************************************************************************************ PP

                  CCTS- CS
  Prefoldin_2 101 kklqq 105
                    +++
   CDO73130.1 114 DIFHN 118
                  99975 PP

>> Mei5  Double-strand recombination repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   5.7     2e-06    0.0017      63     141 ..      20     114 ..       9     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2e-06
                 XXXXXXXX..XXXXX......XXXXXXXXXXXXXXXXXXX...............................XXXXHHHHHHHHHHHHHHHHHHHHHH CS
        Mei5  63 atsskeenqlqqsikildseeeeskllkstiknrdvckse..................sslilnslkekielekkeLeeekakLekqvrekeelLrr 141
                 a  s++    + s +++ ++e+e ++l+ ti +++  + +                  ++ +l++++++++  +k+Le++ + Lekq+++ + +Lr 
  CDO73130.1  20 AVQSQRAL--NVSRQQIAAKERERRILQLTIEEITSLQEDvnlykgvgkmfmqvprpaMEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRD 114
                 33344433..444445557779999999999999999999999999999999999999999999999***9************************96 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.8      0.79   6.7e+02      23      41 ..      36      47 ..      15      63 .. 0.46
   2 !   16.6   1.8   8.1e-06    0.0069      23      62 ..      77     116 ..      72     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.79
  Tropomyosin_1 23 vKeleqenlekeqeiksLt 41
                   +Ke e +       i +Lt
     CDO73130.1 36 AKERERR-------ILQLT 47
                   2222222.......22222 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 8.1e-06
  Tropomyosin_1  23 vKeleqenlekeqeiksLtkknqqleeevekleeklkeak 62 
                     K+l +e++e  ++ik+L+kk + le++ + ++++l++  
     CDO73130.1  77 EKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRDIF 116
                    58888899999999**********************9975 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   7.4e-05     0.063       3      36 ..      26      59 ..       9      61 .. 0.95
   2 ?    7.8   3.4    0.0038       3.3      60      95 ..      78     113 ..      75     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-05
       DHR10  3 slaeekeelaelErkarelqakidalqvvekdlr 36
                 l+  ++++a++Er  r lq +i+ ++ +++d++
  CDO73130.1 26 ALNVSRQQIAAKERERRILQLTIEEITSLQEDVN 59
                68889***************************96 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0038
       DHR10  60 kelrdaleekeielrelerkeerlqrqlenaeekle 95 
                 k+l+d+ +e++++ + le+k + l++q + a+ +l 
  CDO73130.1  78 KQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLR 113
                 678899999999999999999999999999999986 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   9.6   5.9e-05      0.05      23     106 ..      26     114 ..      14     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.9e-05
                   CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHCCCCCCTT...S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS-- CS
  Seryl_tRNA_N  23 edkadvdelleldekrrelqveleelqaerNels..keIgkakkkk...edaeeliaevkelkeelkaleaelkeleaeleklllaiPN 106
                   + +   +++ + +++rr lq ++ee+ + +  ++  k +gk+  +    +  ++l++e kel e++k+le++ k le++++++ +++ +
    CDO73130.1  26 ALNVSRQQIAAKERERRILQLTIEEITSLQEDVNlyKGVGKMFMQVprpAMEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRD 114
                   555666889999********9999988777765444888888877778888899****************************9998866 PP

>> BPS1  Protein BYPASS1-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.1   3.4e-05     0.029     312     376 ..      54     118 ..      10     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
        BPS1 312 LlkeiqrieklsrslmeladsvefpleedkevevkerveeleevcealkegLdplerkvrevfhr 376
                 L ++++    +++++m++   +  +  +d+e+e +e +++le+  + l++++++ + ++r++fh 
  CDO73130.1  54 LQEDVNLYKGVGKMFMQVPRPAMEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRDIFHN 118
                 4445555556788888888777667777889*********************************6 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.9   6.3e-05     0.054     751     846 ..      13     113 ..       5     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.3e-05
     DUF3584 751 lkeleeaykreLkskdvDpetvkelkrkieeLekkieriekrreevreYr....aflqetwlkvd.slaeerpalkeqveelesaaeeleqeltrlied 844
                 l ++++   ++  ++ v  +++++ +r+++ L+ +ie+i++ +e+v+ Y+     f+q   ++++ +l++e ++l e  ++le++ + le++ + ++++
  CDO73130.1  13 LVQIQQTAVQSQRALNVSRQQIAAKERERRILQLTIEEITSLQEDVNLYKgvgkMFMQVPRPAMEkQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQ 111
                 6678888888889999999******************************63333699987777752688899999999999999999999999988888 PP

     DUF3584 845 tk 846
                 ++
  CDO73130.1 112 LR 113
                 75 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.11        90      94     114 ..       5      25 ..       2      36 .. 0.78
   2 ?   11.0   1.4   0.00024       0.2     170     228 ..      61     116 ..      37     119 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
                 TXHHHHHHHHHHHHHHHSXXX CS
      FliD_C  94 gdstlrnilsqLrsslsseve 114
                 +d tlr+il q++++  +++ 
  CDO73130.1   5 SDDTLRKILVQIQQTAVQSQR 25 
                 799***********9999554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00024
                 SXSHHHHHHHHHHHHHSTT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHH CS
      FliD_C 170 dsglatrlenllksyvkssngtlqtasknltkqikdldkkiedldkrletleerlkkqf 228
                  +g+ +++ ++ ++ ++   ++l+ ++k+lt++ik+l+kk + l+k+ ++ +++l+  f
  CDO73130.1  61 YKGVGKMFMQVPRPAME---KQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRDIF 116
                 55555555555555553...448888888888888888888888888888888887655 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  14.7    0.0018       1.5      16      93 ..      32     114 ..       3     118 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeekqdeeleeleee...................leklekeeeelleeLkelekereeleaelaaleeelea 93 
                 +q+++ e+er+ ++   +++++              l+e+                    ++l++ee+el e +k+lek+ + le++ ++++++l++
  CDO73130.1  32 QQIAAKERERRILQLTIEEITS--------------LQEDvnlykgvgkmfmqvprpamEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRD 114
                 3344444444444444444443..............33335555555555555666666689*******************************9986 PP

>> NCA2  ATP synthase regulation protein NCA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.6    0.0039       3.3     123     148 ..       3      28 ..       1      30 [. 0.88
   2 ?    7.1   1.0    0.0031       2.7     209     279 ..      41     105 ..      24     113 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0039
        NCA2 123 lvsGeLvraLLIQvqktKvDvevAls 148
                 ++s + +r +L+Q+q t v  + Al+
  CDO73130.1   3 TLSDDTLRKILVQIQQTAVQSQRALN 28 
                 5677889**************99997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0031
        NCA2 209 rlltessaeeeekeekeeenelsykdqGllllevhvLrklaekllpkelekefleDledLekvklgvekkl 279
                 r++ + + e  e ++  +e++  yk  G+++++v   r ++ek l k+ eke++eD+++Lek +   ek+ 
  CDO73130.1  41 RRILQLTIE--EITS-LQEDVNLYKGVGKMFMQVP--RPAMEKQL-KDEEKELTEDIKNLEKKSKYLEKQF 105
                 333332211..1222.3456667888888887776..67888888.889*************998777765 PP

>> Herpes_UL14  Herpesvirus UL14-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.3   0.00055      0.47      53     121 ..      26     101 ..       3     115 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00055
  Herpes_UL14  53 aqlrsdaRlesvrrkikriqakveeqaelrsiLkanR....ryl...spkllerldatedkllekedsLeeavael 121
                  a   s++ +++ +r  +++q  +ee ++l++ ++ ++     ++    p++ ++l  +e +l+e++++Le+    l
   CDO73130.1  26 ALNVSRQQIAAKERERRILQLTIEEITSLQEDVNLYKgvgkMFMqvpRPAMEKQLKDEEKELTEDIKNLEKKSKYL 101
                  333478899999******************9999886333223322369999999999999999999999987766 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.2   1.9e+03     100     115 ..       9      24 ..       4      28 .. 0.53
   2 ?    7.0   0.4     0.006       5.2       2      37 ..      31      65 ..      30      76 .. 0.85
   3 ?   10.4   4.6   0.00053      0.45      79     115 ..      77     113 ..      67     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHH CS
   Prefoldin 100 leklkdqittleanla 115
                 l+k+  qi+++ ++ +
  CDO73130.1   9 LRKILVQIQQTAVQSQ 24 
                 4444455555555554 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.006
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.-T CS
   Prefoldin  2 keeleslqaelaqlkeaieelektletlktlkkede 37
                +++++++++e++ l+ +iee++++ e ++ +k    
  CDO73130.1 31 RQQIAAKERERRILQLTIEEITSLQEDVNLYKG-VG 65
                599*************************99887.44 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00053
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  79 iellkkkleelekqlekleeeleklkdqittleanla 115
                 ++ lk++++el++ +++le++ ++l +q + ++a+l+
  CDO73130.1  77 EKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLR 113
                 6789*****************************9986 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.6   1.4e+03      64      83 ..      30      49 ..      10      62 .. 0.57
   2 ?   11.2   0.8   0.00071       0.6      45      97 ..      63     113 ..      58     115 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.6
     DUF5320 64 aetaeaskeeekelLeeqae 83
                ++++ a+ke e+++L+  +e
  CDO73130.1 30 SRQQIAAKERERRILQLTIE 49
                34455555566666654333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00071
     DUF5320  45 glgrgfgrrrraggarlaaaetaeaskeeekelLeeqaeaLeeeleaikkrlk 97 
                 g+g++f    r+   +    + +e++  e+++ Le++ ++Le+++++ +++l+
  CDO73130.1  63 GVGKMFMQVPRPAMEKQL--KDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLR 113
                 555555554444444433..677777777788888888888888888888876 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.4     0.059        51      67      94 ..       7      34 ..       3      51 .. 0.88
   2 ?    9.9   2.4   0.00091      0.78      33      75 ..      76     118 ..      44     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.059
      DUF148 67 ekleaIldnkslTrkeqkeaieelkkqy 94
                + l++Il   ++T  + + a++  ++q 
  CDO73130.1  7 DTLRKILVQIQQTAVQSQRALNVSRQQI 34
                6799*****************9998886 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00091
      DUF148  33 vtdeykefeakvkaqkeevkknvtavisnLssvqekleaIldn 75 
                 +++++k+ e+++++  ++++k+ +   +++ ++q++l++I++n
  CDO73130.1  76 MEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRDIFHN 118
                 6789999999999999999999999999999**********99 PP

>> Coat_F  Coat F domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0027       2.3      28      50 ..       5      27 ..       1      28 [. 0.91
   2 ?   -2.6   0.1       7.9   6.8e+03      33      50 ..      41      58 ..      36      61 .. 0.72
   3 ?    2.3   0.1      0.23     2e+02      35      52 ..     100     117 ..      98     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0027
      Coat_F 28 snpelRqtlkqilneeiemqeel 50
                s++ lR++l qi++ + + q+ l
  CDO73130.1  5 SDDTLRKILVQIQQTAVQSQRAL 27
                8999****************976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.9
      Coat_F 33 Rqtlkqilneeiemqeel 50
                R++l+    e + +qe++
  CDO73130.1 41 RRILQLTIEEITSLQEDV 58
                667777777777778776 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.23
      Coat_F  35 tlkqilneeiemqeelfn 52 
                  l +++n+++++ +++f+
  CDO73130.1 100 YLEKQFNDAQAQLRDIFH 117
                 5899********999996 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.2    0.0025       2.1     200     310 ..       7     118 ..       2     121 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0025
       LMBR1 200 eelkklyfeaaklntekeeaereledllkevkklrksisesdp..lrkyleeilk................kvPeeiaeklksnenkteeslaklekql 280
                 ++l+k+   +++++++  +++r l+     v++++   +e ++  l+  +eei +                +vP           ++ e++l+++ek+l
  CDO73130.1   7 DTLRKI---LVQIQQTAVQSQRALN-----VSRQQIAAKERERriLQLTIEEITSlqedvnlykgvgkmfmQVPR----------PAMEKQLKDEEKEL 87 
                 555555...5556666666666666.....333333333333212334444444443444333333333335555..........45666888888888 PP

       LMBR1 281 ikalqkrertekqwkrll.ekalelediikn 310
                  + +++ e+++k +++   + +++l di  n
  CDO73130.1  88 TEDIKNLEKKSKYLEKQFnDAQAQLRDIFHN 118
                 8888888877776665540444777777666 PP

>> PRP1_N  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.2    0.0041       3.5      82     131 ..      66     115 ..      11     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0041
                 ----HHHHHHHHHHHHHHTT-------......-HHHHHHHHHHHHHTT- CS
      PRP1_N  82 riyeeiderlderrkkrreakekeelekvreekpkiqeqFadlkrkLaev 131
                 +++ ++ +   e++ k++e++ +e++++ +++++ +++qF+d + +L ++
  CDO73130.1  66 KMFMQVPRPAMEKQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRDI 115
                 567777777788999999*****************************987 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.9     0.081        69      14      46 ..      22      54 ..      11      64 .. 0.60
   2 ?    9.9   3.6   0.00074      0.63      34      60 ..      78     104 ..      75     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.081
                XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 14 kgllaykqlkqeiaalqaelaklkaeneeLeae 46
                ++++a+   +q+iaa+++e   l+ ++ee ++ 
  CDO73130.1 22 QSQRALNVSRQQIAAKERERRILQLTIEEITSL 54
                555666666777777777766666554444443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00074
                 HHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC  34 aklkaeneeLeaevkdLksdedyieer 60 
                 ++lk+e++eL++ +k+L++   y+e++
  CDO73130.1  78 KQLKDEEKELTEDIKNLEKKSKYLEKQ 104
                 79***********************97 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.9    0.0091       7.7      20      68 ..       8      56 ..       2      63 .. 0.67
   2 ?    6.3   2.3    0.0062       5.3      47      83 ..      78     114 ..      75     118 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0091
     DUF3450 20 qalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyne 68
                +++k   +++++a qsq+  + + ++ +  ++e r l+  +e+++  +e
  CDO73130.1  8 TLRKILVQIQQTAVQSQRALNVSRQQIAAKERERRILQLTIEEITSLQE 56
                5566667777777777777777777777777777777777666655444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0062
     DUF3450  47 qellaeyralkeeleslevyneqlerlvasqeqeias 83 
                 ++l++e ++l+e +++le++ ++le++ +++++++ +
  CDO73130.1  78 KQLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRD 114
                 4566777777777777777777777777777776654 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.5     0.028        24      44      70 ..      25      51 ..      17      57 .. 0.83
   2 ?    6.1   2.1     0.014        12      54      72 ..      78      96 ..      64      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.028
     DUF5595 44 elynvdeaqlesleeeekrLeeEierl 70
                + +nv ++q+++ e+e+++L+  ie++
  CDO73130.1 25 RALNVSRQQIAAKERERRILQLTIEEI 51
                6789****************9766654 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.014
     DUF5595 54 esleeeekrLeeEierlek 72
                ++l+ eek L+e+i++lek
  CDO73130.1 78 KQLKDEEKELTEDIKNLEK 96
                47999*************9 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.3     0.032        28     111     170 ..      42     119 ..       4     123 .] 0.66

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.032
     DUF4407 111 elaeeqqeeakelkeqlaaa..................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgt 170
                 ++ +   ee+++l+e ++                    l++e +el+++i++l+++ + +e+++++++a++++  +++
  CDO73130.1  42 RILQLTIEEITSLQEDVNLYkgvgkmfmqvprpamekqLKDEEKELTEDIKNLEKKSKYLEKQFNDAQAQLRDIFHNA 119
                 333334444444444444336666666666666666668888888888888888888888888888888888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2425  (0.135256); expected 358.6 (0.02)
Passed bias filter:                      882  (0.049194); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.53u 0.33s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 805.17
//
Query:       CDO73131.1  [L=944]
Description: hypothetical protein BN946_scf185007.g185 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-43  148.2   0.0    3.3e-43  147.5   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.5e-38  130.3   5.8      9e-38  129.6   5.8    1.3  1  EFTUD2       116 kDa U5 small nuclear ribonucleoprotein compo
    3.5e-24   84.9   0.0    8.6e-24   83.6   0.0    1.7  1  EFG_IV       Elongation factor G, domain IV
    2.5e-22   78.7   0.0    7.8e-22   77.1   0.0    1.9  1  EFG_C        Elongation factor G C-terminus
    3.3e-09   37.0   0.1    7.2e-09   35.9   0.1    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    5.4e-05   23.2   0.1    0.00011   22.3   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.026   14.0   0.1       0.07   12.6   0.1    1.6  1  SRPRB        Signal recognition particle receptor beta subuni
      0.073   13.2   0.0       0.21   11.7   0.0    1.7  1  EFG_II       Elongation Factor G, domain II
       0.13   11.6   0.0       0.21   10.8   0.0    1.3  1  Septin       Septin


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   1.7e-46   3.3e-43       3     182 ..     141     330 ..     139     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 1.7e-46
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...ketkkylinliDtPGHvdFskevirglrvlDgav 98 
                 +rn++++gh++hGKt L+d L+++t++ + ++   ++ r++Dt+   r r i+iks+ +sl    + +k++li+liDtPGHv+F++ev  ++r +Dg +
  CDO73131.1 141 VRNVAVVGHLHHGKTALMDMLVFETHKLDWDSD--QQIRYTDTHVLSRDREISIKSSPMSLIlsnSYGKSHLIHLIDTPGHVNFVDEVACAIRLVDGII 237
                 79***************************9555..44699*********************987559******************************** PP

                 EEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.........TTEEEEEEBTTTTBTHH CS
    GTP_EFTU  99 lvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekge.........kevpvvfgSalkgegvk 182
                 lvvd+veGv+ +te ++r+al+egv+i +++NK+Drl+ el+  + ++ +k++++ e+++ +    +         +  +v+f+S    ++++
  CDO73131.1 238 LVVDVVEGVMCNTEAIIRHALQEGVKITLVVNKIDRLILELRIKPADAFYKIKHTIEEVNTFISGINpdpelrlspERGNVAFASTDMHWCFT 330
                 *************************************99999999999999977755554443333244555555555567777777666655 PP

>> EFTUD2  116 kDa U5 small nuclear ribonucleoprotein component N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   5.8   4.5e-41     9e-38       2     122 .]       5     122 ..       4     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 4.5e-41
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXX----TTT---S--TTTTT-SSSEEEE--S-SS- CS
      EFTUD2   2 dlYDEFGNyiGpelesdeeeeseeeeeeeeeeeeeeeeeeeaekaeedeelkdeeeeeeaeeeesnavvlhedkkyypsaeevYGkdvetlvqeeDaqp 100
                 + YDEFGNyiG +l sdeeee ++e+ + + + e++  e  +e+ ++ +e +  +e    +e  +navvlhedk+yypsa+evYG+dvetlvqeeDaqp
  CDO73131.1   5 EDYDEFGNYIGGDLGSDEEEELQQEQAQFAPQPESRPLEGYDEEPMQGQEGMALMEV---DEPVHNAVVLHEDKQYYPSASEVYGEDVETLVQEEDAQP 100
                 57***************9966666666655555555444423333333333333332...23369********************************** PP

                 TTS-SS--------B---SS-- CS
      EFTUD2 101 lsePiiaPvkekkfeveekdlp 122
                 lsePi+aP+k +k++veekd+p
  CDO73131.1 101 LSEPIVAPIKVRKWTVEEKDMP 122
                 ********************97 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   4.3e-27   8.6e-24       2     120 ..     677     796 ..     676     797 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 4.3e-27
                 CCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--S....TCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE-- CS
      EFG_IV   2 qVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetk....ggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslh 96 
                 +V++r    + +ker +++ +++ +d  +++ i++++P++  + n++ d+t     +++++  ++e++++Gfq+ ++eGpl++ep+++vk+++ld+sl 
  CDO73131.1 677 RVNMR----MSAKERGKFFEEKYQWDLLASRSIWAFGPDD-SGPNILLDDTLpsqvDKKLLGTVKEHIKQGFQWGTREGPLCDEPMRNVKFRILDASLA 770
                 78899....99999************************98.99999999998666788888899*********************************** PP

                 T..TTC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  97 e..vdsseaafkpaarralkeallkA 120
                 +  ++++++++ p+arr++++++l+A
  CDO73131.1 771 QepIYRGGGQIVPTARRVCYSSFLMA 796
                 ***********************988 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   3.9e-25   7.8e-22       1      87 [.     799     886 ..     799     888 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 3.9e-25
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkld 87 
                 +l+EPi+ ve+++p +++++v++ l++rrG++++  ++ +s   +++a iP+ +  gf+t+Lr++T+G++ +  +f++++ vpgd+ d
  CDO73131.1 799 RLMEPIYFVEVQAPADCISAVYTVLARRRGHVTQDIPKaGSPLYTVKALIPVIDANGFETDLRTATQGQAFCLQTFDHWSIVPGDPTD 886
                 59********************************99998899******************************************9876 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   3.6e-12   7.2e-09       4      69 ..     482     551 ..     480     556 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3.6e-12
                  EEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSST CS
  GTP_EFTU_D2   4 algrvysGtlkkGdevrilg.ndtskke...ivtrissletfhededeavaganaGvivaikgledaiiv 69 
                  a+grv+sGt++kG+ v++lg  +++++e    + ++  ++ +++++ ++ ++++aG++v++ g++++i +
   CDO73131.1 482 AFGRVISGTVRKGMDVKVLGeGYSPEDEedmVKAQVEDIWISEARYVIPAEEVAAGNLVLLGGVDTSIFK 551
                  79****************9999999999*************************************97665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   5.3e-08   0.00011       1     114 []     143     270 ..     143     270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.3e-08
                 EEEEEESTTSSHHHHHHHHH..........TSTEEESSSTTSSSSEEEEEEE......ETTEE........EEEEECGGCSSHHHHHHHHHHHHHHHHC CS
    MMR_HSR1   1 evaivGrpNvGKStLinalt..........gekaivsdkpgtTrdinegrvk......lkgke........ielvDtpGliegaseekglgkaflalee 75 
                 +va+vG+   GK+ L+  l+          +++ + +d++   rd +    +      l   +        i+l+DtpG ++       + +  +a++ 
  CDO73131.1 143 NVAVVGHLHHGKTALMDMLVfethkldwdsDQQIRYTDTHVLSRDREISIKSspmsliL---SnsygkshlIHLIDTPGHVN------FVDEVACAIRL 232
                 59*****************9666555553324677788888888886663223444440...044444455********555......45555566566 PP

                 TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  76 adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 +d i+lvvd+  e++  + e + +   +++ +++lv+nk
  CDO73131.1 233 VDGIILVVDVV-EGVMCNTEAIIRHALQEGVKITLVVNK 270
                 9********88.657677777777777789999999998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.5e-05      0.07       4      84 ..     142     241 ..     140     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
                 -EEEEE-STTSSHHHHHHHHHHS............S---B.---SS-EEETTG............GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEE CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd............svkkt.vtSqessaalkv.........ksekgskltliDfPGheklrqklleklkaksslkglv 80 
                 ++v +vG  + GKT+l+  L  +             +++t v S + +++ k          +  k + ++liD PGh+++  ++       + + g++
  CDO73131.1 142 RNVAVVGHLHHGKTALMDMLVFEthkldwdsdqqiRYTDThVLSRDREISIKSspmslilsnSYGKSHLIHLIDTPGHVNFVDEVACA---IRLVDGII 237
                 56889999*********999988888999999988444441345555555555555555642334556689*********99998777...55688888 PP

                 EEEE CS
       SRPRB  81 fvvD 84 
                  vvD
  CDO73131.1 238 LVVD 241
                 8888 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001      0.21      39      67 ..     593     621 ..     578     629 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
      EFG_II  39 rdeeTketilsGmGelHleivverlkrey 67 
                 + ee++e ++ G Gel l+ v+  l+r +
  CDO73131.1 593 KVEESGEHVVIGTGELYLDCVMHDLRRLF 621
                 558**********************9966 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.21       6      87 ..     143     234 ..     139     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                 EEEEEEBTTSSCCCCCCTTSSSS----.......--------------S-EEE.EEEEEET..TCEEEEEEEE---BSSSSSHHCCCHHHHH CS
      Septin   6 tlmvvGesglGkttlintlfetdliee.......ekleeasekkkktveikkk.kvvieed..gvklnltviDtpgfGdavdnskswepive 87 
                 ++ vvG+   Gkt+l++ l+ ++ + +       + ++++  +  ++++ik++  ++i  +  g    + +iDtpg+ ++vd   +   +v+
  CDO73131.1 143 NVAVVGHLHHGKTALMDMLVFETHKLDwdsdqqiRYTDTHVLSRDREISIKSSpMSLILSNsyGKSHLIHLIDTPGHVNFVDEVACAIRLVD 234
                 899**************99655544444667655444444457778888885414445444346677789************9988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 6008.55
//
Query:       CDO73132.1  [L=548]
Description: hypothetical protein BN946_scf185007.g186 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-161  537.8  10.3   1.4e-161  537.4  10.3    1.1  1  Calreticulin  Calreticulin family
  ------ inclusion threshold ------
       0.37   11.4   3.4       0.46   11.1   0.1    2.7  2  OAD_gamma     Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> Calreticulin  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  537.4  10.3  1.6e-165  1.4e-161       1     367 []      37     404 ..      37     404 .. 0.99

  Alignments for each domain:
  == domain 1  score: 537.4 bits;  conditional E-value: 1.6e-165
  Calreticulin   1 fveqFeeeeelekrwikskakked....eeakYkgkwsveepkklkglegdkgLvlkskakhhaisaklekpiklkkkdLvvqYevklqeglecgga 93 
                   f+eqF++  ++++rw++s+a+k++    e+++Y gkw+veep +   + +dkgLv k+ka+hhaisa ++kpi +++++LvvqYevk+q+g +cgg+
    CDO73132.1  37 FLEQFTD--DWSERWTPSEATKKTavggETWSYVGKWEVEEPLEP-VIIDDKGLVAKTKAAHHAISAPFKKPIAFDDQPLVVQYEVKYQKGGNCGGG 130
                   79****8..9**********88888*****************876.999************************************************ PP

  Calreticulin  94 yikLlseeeekdleefsdktpytimFGpdkcgstnkvhfilrkknpktgeieekhlkkppklkkdklthLytLilkpdntfeiridgkvvksgnlle 190
                   y+kLl++  +++ +ef+dktp+timFGpd     +k+hfi+r+knp+tge+eekhlk ppk    klt+LytL+l p+nt+++r++g++++ gnlle
    CDO73132.1 131 YVKLLEDGFQTAGKEFDDKTPWTIMFGPDLTCPGTKIHFIFRHKNPVTGEFEEKHLKLPPKPVFGKLTNLYTLHLFPNNTYDVRFNGESYNLGNLLE 227
                   *******************************99**************************************************************** PP

  Calreticulin 191 dfeppvnppkeidDpedkkPedWddrekipDpeavkPedwdekapekipdpeavkPedWledepelipdpeaekPedwdeeedgeweaplikNpkCe 287
                   df+ppvnppkeidDpedkkPedW+d ++ipDp+a+kP+dwde+ap++ipd++avkPe+Wl+depe+ipdp+aekPe+wd+eedgew+ap+++NpkC+
    CDO73132.1 228 DFTPPVNPPKEIDDPEDKKPEDWVDAKRIPDPDAKKPDDWDEDAPYEIPDEDAVKPEGWLDDEPEYIPDPDAEKPEEWDDEEDGEWIAPTVRNPKCD 324
                   ************************************************************************************************* PP

  Calreticulin 288 easgCgkwkpplikNpkYkGkwkaplienpnYkGeWkprkipnpdyfedkkplkklepigaigfelwsmskdilfdniyi 367
                   ea+gCg+wk+p+++Np+YkGkw ap+i+np+YkGeW+prkipnp+yfed +p+k+l pig++g+elw+m++dilfdniyi
    CDO73132.1 325 EAPGCGEWKRPYKANPAYKGKWYAPMIDNPAYKGEWAPRKIPNPEYFEDLNPVKSLVPIGGVGIELWTMTEDILFDNIYI 404
                   *******************************************************************************8 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.7      0.38   3.4e+03      49      67 ..     428     446 ..     416     447 .. 0.52
   2 ?   11.1   0.1   5.1e-05      0.46       8      57 ..     486     535 ..     480     545 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.38
   OAD_gamma  49 aaaaaaaaaeldddeelvA 67 
                 a ++aa++++++d+ee vA
  CDO73132.1 428 ALEKAANKVDDEDEEEQVA 446
                 2222222236677777666 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.1e-05
   OAD_gamma   8 llGmgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa 57 
                  l++++ F +L +L  ++ + +k i+k akk +++++ +++ ++a+ a+a
  CDO73132.1 486 ALSVVTLFGMLGVLFGFVGAQQKPITKSAKKTDAPSPDDKKTETAPVAPA 535
                 5789999********************************99999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3771.69
//
Query:       CDO73133.1  [L=1241]
Description: hypothetical protein BN946_scf185007.g187 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-54  181.7   0.7    1.9e-53  180.5   0.7    1.7  1  DSHCT           DSHCT (NUC185) domain
    2.5e-33  116.2   0.0    3.9e-33  115.5   0.0    1.3  1  rRNA_proc-arch  rRNA-processing arch domain
    7.4e-32  110.0   0.0    1.4e-31  109.1   0.0    1.4  1  Ski2_N          Ski2 N-terminal region
      3e-19   69.4   0.1    6.7e-19   68.3   0.1    1.6  1  DEAD            DEAD/DEAH box helicase
    1.1e-06   28.8   0.0    2.4e-06   27.7   0.0    1.6  1  ResIII          Type III restriction enzyme, res subunit
    1.5e-05   25.3   0.0    5.8e-05   23.4   0.0    2.1  1  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.084   11.9   0.5       0.16   11.0   0.5    1.3  1  DUF3516         Domain of unknown function (DUF3516)
       0.13   11.7   0.1        1.1    8.8   0.0    2.4  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family


Domain annotation for each model (and alignments):
>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   0.7   8.5e-57   1.9e-53       2     164 .]    1070    1236 ..    1069    1236 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 8.5e-57
       DSHCT    2 ntvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepklseeleealeelkeiaeriakvs.........vesrl 89  
                   tv lkGrva+ei+s++eL+ltel++++ l  +epee++Alls++vf+ek++    + p ++++l+e le ++ ia+r+++v+         ++ +l
  CDO73133.1 1070 STVLLKGRVACEINSANELVLTELILENTLAAYEPEEVVALLSCFVFQEKTDV---E-PVIPPKLQEGLEAIMAIADRVERVQdrhkvpgeeFR-QL 1161
                  6899*********************************************9654...3.678999*****9999999999999999999997555.47 PP

       DSHCT   90 dlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiVfa 164 
                  ++glvevvy+Wakg++f++++e td++eG+iVR+++rl+e++r++++aa+vig++eL kk+eea+ +ikRdiVfa
  CDO73133.1 1162 KPGLVEVVYEWAKGMPFEQITELTDVAEGTIVRVITRLDETCREVRDAARVIGDAELFKKMEEAQIKIKRDIVFA 1236
                  *************************************************************************96 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   1.7e-36   3.9e-33       1     269 [.     770    1043 ..     770    1044 .. 0.78

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 1.7e-36
                      HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TT......HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHGGG--TTEEEEEEETTTE CS
  rRNA_proc-arch    1 EyMlerSFsqfqnqkslpelekklkeleeelksitied......eedieeyyklrqqleelreeirkiltkpknilpfLqpGRlvrvksnddl 87  
                      E+M++rSFs++++qk lpe +kk+ e+e++l+++   +        die yy+++  + e+++++ +++ + +++ + L+ GR+v+++ ++  
      CDO73133.1  770 EEMIKRSFSENASQKLLPENQKKVLETEKRLSNMP--QlscdvcSLDIEAYYDTSFNIVEMNQRLLAMAAATPQGSKLLSSGRVVVLR-DGHY 859 
                      9********************************55..6678899669*****************************************.9999 PP

                      EEEEEEEEEEE....E-SSS...T.TB---TCTTEEEEEEEEEEETTS-G....GG--TT--S--TT--B......-TT..S-EEE.EEEEEE CS
  rRNA_proc-arch   88 dfgwGivlnfk....krnkn...skeeeasdeesyvVdvllvlsenskrk....dedgekseesaeelkP......kagdrekgev.evvpvp 162 
                      ++ +G++l+          +   +            V+ + vl+  s+++    +      +  +++l P      + +   +  +  + p+p
      CDO73133.1  860 KWNIGVLLKQApsalA---TsfgG----------EKVKLYFVLAMVSPETrmgkT------DVDGQSLPPrwpprpE-SLLVDDPTyDLTPIP 932 
                      *********9743220...12211..........127788888888776544331......3344444443333321.233333455****** PP

                      GGGEEEEEEEEE---SS....TTSTTHHHHHHHHHHHHHH...HSS.---B--TTTTS----HHHHHHHHHHHHHHHHHHTSGG.GSSSHHHH CS
  rRNA_proc-arch  163 lkcieaiSsvrlklpkd....lrkseareevakavqelkr...rfp.giplldpikdmkikdeefkkllkkiealesrlaknpllhspnleel 247 
                      l++i+ +S+  +k++ +    ++k +  +++++++q +++   + +  ip +d     +++  +f++ll+ +++l  rl++  ++ + ++ee+
      CDO73133.1  933 LTSIAMVSNRTIKVETEwiveKHKISYMTAAMRSLQGVLGewlQ-NgTIPEVDW---SRLRALDFQELLRARNELVPRLSTFGCNSCSEFEEH 1021
                      *****************964332333444444555554445442.368999998...99**********************999669****** PP

                      HHHHHHHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch  248 yalyekkvalqeeikelkkeis 269 
                      ya  + k+ l+++i elk +is
      CDO73133.1 1022 YAFTHAKKVLEANIAELKMAIS 1043
                      *******************998 PP

>> Ski2_N  Ski2 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   6.3e-35   1.4e-31       2     132 ..      58     179 ..      57     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 6.3e-35
      Ski2_N   2 klqthwdrkkdyksllkippsasrtslefkRkgleGkivgykevslveasnataknSlSlsRkpgpksdfvrGsssnlpFaPGGleeevlkdsekases 100
                 ++q+hwd+k +++sllk +psa  t+l f+R+gl+G+++gy ev   +   +t  nS++l R+pgp+ +fvrG+++++pF+PGGl++ + +        
  CDO73133.1  58 SYQIHWDEKINVASLLKFEPSAPPTTLSFIRSGLQGHVTGYAEV-SNP-RLSTGLNSTALDRAPGPSRNFVRGKAGYMPFLPGGLDNLAPA-------T 147
                 59******************************************.455.58999********************************86544.......3 PP

      Ski2_N 101 eekllhrdekglltippGfsrGldfkedeeee 132
                 +  +l++++  l+t++pG+srGl++  d++++
  CDO73133.1 148 DVGNLEEGSSHLRTVAPGLSRGLKLPHDGDDD 179
                 3456899******************9998765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1     3e-22   6.7e-19       3     173 ..     286     434 ..     284     437 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 3e-22
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdiv 101
                  Q+ea+ ++  g++v+vaa+T +GKT ++  ++  +      k+ ++a++ +P ++L +q ++++k+ +  ++  v  ++g+v+        + +++++
  CDO73133.1 286 FQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALA-----AKHMTRAIYTSPIKALSNQKYRDFKQTFGAAS--VGILTGDVQI-------NPEANCL 370
                 69***************************9999933.....588889***********************744..4444555555.......3446778 PP

                 EEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 102 vgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 ++t++ l ++l +g   +++v+f+++DE++ + d +++  +++++  l       + + ++i+lSAT+p + 
  CDO73133.1 371 IMTTEILRSMLYKGADLIRDVEFVIFDEVHYVNDAERGVVWEEVIIML-------PDHVNIILLSATVP-NT 434
                 *********99888867*******************************.......45566********9.43 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.1e-09   2.4e-06      26     170 ..     299     432 ..     280     433 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.1e-09
                 EEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH...... CS
      ResIII  26 rglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeee 124
                  +++++ T +GKT+va  +i+  +k+    +++   p k+l +q +++fk+++  a     ++++gd +++      +++ l++t++ l + +     +
  CDO73133.1 299 SVFVAAHTSAGKTVVAEYAIALAAKHM--TRAIYTSPIKALSNQKYRDFKQTFGAA---SVGILTGDVQIN-----PEANCLIMTTEILRSML-----Y 382
                 567888999*******66666666644..59***********************99...7999****9999.....89999999*99999999.....7 PP

                 ..HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT-.--SEEEEEESS-S CS
      ResIII 125 seellrdrfdviiiDEaHrlgakk...swreilekf.keavllglTATpe 170
                 +   l    +++i+DE+H +++++    w+e++ ++ ++  ++ l+AT +
  CDO73133.1 383 KGADLIRDVEFVIFDEVHYVNDAErgvVWEEVIIMLpDHVNIILLSATVP 432
                 7888888888************86888****7666636688889999975 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.6e-08   5.8e-05      40     111 .]     636     715 ..     563     715 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.6e-08
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.......SS..HHHHHHHHTTSSSTT CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.......rn..vtsyiqriGRtgRag 111
                 +  + v+hg l    +e +   f +g ++vL at   ++G+++p  ++V+  ++        r+  + +y q++GR+gR g
  CDO73133.1 636 SRGIGVHHGGLLPIVKEVVEILFARGLVKVLFATETFAMGVNMPAKSVVF-SHIRkhdgrsfRDilPGEYTQMAGRAGRRG 715
                 5567779999999999999999**********************555555.5555355644433566************75 PP

>> DUF3516  Domain of unknown function (DUF3516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   7.3e-05      0.16      39      93 ..     733     784 ..     731     802 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.3e-05
     DUF3516  39 ektferLieaepEpLtsrfkvshamllnvlaregdavaalrrLlednhesrakqr 93 
                 ++t + +i ++p +L+s+f+++  m+ln+l+ e     +++++++++ +++a+q+
  CDO73133.1 733 QSTLHNMILGTPSKLQSQFRLTYNMILNLLRVEA---LRVEEMIKRSFSENASQK 784
                 6899999***********************9874...455566666666665555 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.37   8.3e+02      11      30 ..     309     327 ..     307     329 .. 0.80
   2 ?    8.8   0.0   0.00047       1.1      19      51 ..    1168    1199 ..    1165    1200 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.37
  HTH_Tnp_ISL3  11 riTlrleayilelllesrsv 30 
                   + T  +e++i+ +++++ ++
    CDO73133.1 309 GKTVVAEYAIALAAKHM-TR 327
                   5677799*********9.64 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00047
  HTH_Tnp_ISL3   19 yilelllesrsvkavArqlgvSwtTVwrildry 51  
                     ++e ++ + ++ ++ ++++v + T+ r++ r+
    CDO73133.1 1168 VVYEWAKGM-PFEQITELTDVAEGTIVRVITRL 1199
                    578889999.*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.48
# Mc/sec: 7741.23
//
Query:       CDO73134.1  [L=148]
Description: hypothetical protein BN946_scf185007.g189 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-08   32.1   0.0    1.3e-07   31.7   0.0    1.2  1  Ist1      Regulator of Vps4 activity in the MVB pathway


Domain annotation for each model (and alignments):
>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   7.4e-12   1.3e-07     125     163 ..       1      39 [.       1      40 [. 0.96

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7.4e-12
                 HTT-T.T--HHHHHHHS-----HHHHHHHHHHHHHHHT- CS
        Ist1 125 venkdngVnekvvkklsvktpskelvekylkeIAkeynv 163
                 +enkd +V+e++++kl+v+tps +lv++yl eIAk y+v
  CDO73134.1   1 MENKDGCVSERITRKLNVSTPSPSLVDAYLAEIAKGYGV 39 
                 689999*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1042.85
//
Query:       CDO73135.1  [L=803]
Description: hypothetical protein BN946_scf185007.g190 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-39  134.0   0.1    1.1e-38  133.2   0.1    1.4  1  RasGEF    RasGEF domain
    3.3e-18   65.8   0.3    6.9e-18   64.8   0.3    1.5  1  RasGEF_N  RasGEF N-terminal motif
    1.6e-13   50.0   0.2    3.5e-13   48.9   0.2    1.6  1  SH3_1     SH3 domain
    4.4e-10   39.1   0.0    9.2e-10   38.1   0.0    1.6  1  SH3_2     Variant SH3 domain
    5.4e-06   26.2   0.1    1.2e-05   25.1   0.1    1.6  1  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.1     3e-42   1.1e-38       2     176 ..     553     732 ..     552     733 .. 0.91

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 3e-42
      RasGEF   2 lAeqltlieaelfskikpeellgsawsked..rs.pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqssp 97 
                 lAe+l++ e++l+ ki++ e+l+  w k++  ++ +n++ + ++  rl  wv  +il+ e + kR  +ie++ik+a++c+ l+N++s++ai++aL+s+ 
  CDO73135.1 553 LAEHLCMHEQRLYAKIRSIECLN--WIKSQtgNAvKNITSFNEFNERLGSWVKMSILNMEGMGKRSDTIEFWIKVAEKCKALHNYASMHAIVAALSSPV 649
                 8**********************..777664344678887777777788************************************************** PP

      RasGEF  98 vsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl.......egk.iNfeKr 176
                 +srL+ tw++v +  + +le++ +  +p+ + ++yr   +++  + pciPf+g+yltd+   +++ pd++           iNf Kr
  CDO73135.1 650 ISRLHLTWTHVGR--RSQLEQMAKYHEPSGSLSAYRISQRTV--DGPCIPFIGMYLTDIQLANTQGPDNIvilsssaPMLlINFAKR 732
                 ************5..5777****************9999999..9**************9999998888889999986677***997 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.3   1.9e-21   6.9e-18       2     104 ..     391     495 ..     390     496 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.9e-21
    RasGEF_N   2 vkagtlekLierLtsk..rlldd.dfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddka 97 
                 v agtl++L+erLt    r +++ ++ ++FL+ty+sF t++e++++L++ y+i++p  l+ +e ++w++k+ +++r rvl vl  w+e++   ++dd +
  CDO73135.1 391 VSAGTLRALVERLTVDfpRPFQEtKYRQVFLTTYKSFATAEEVFDLLLAQYNITHPTALTLKELEQWKEKKLKPTRRRVLTVLHVWLEEFGL-LQDDAH 488
                 789***********9977777666*****************************999999999899************************987.777777 PP

    RasGEF_N  98 llsklek 104
                 l  +l++
  CDO73135.1 489 LARRLVD 495
                 7766665 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.2   9.8e-17   3.5e-13       3      48 .]      65     110 ..      64     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 9.8e-17
                 SSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 lYDY+ae+ + Lsf+++D++ v++ +++gWw + +  ++ +G+iPs
  CDO73135.1  65 LYDYDAEDNSQLSFRRNDILDVVKTEDTGWWAAVRPEDNTVGWIPS 110
                 8********************************************8 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.6e-13   9.2e-10       3      57 .]      63     116 ..      61     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.6e-13
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEEE CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslveeq 57 
                  ++ dy++ed+s Lsf+++d++ v+   ++++ gww++ +  +++vG++Ps +ve++
  CDO73135.1  63 LCLYDYDAEDNSQLSFRRNDILDVV---KTEDTGWWAAVRpeDNTVGWIPSAFVEPI 116
                 56779********************...888889999999999***********985 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   3.4e-09   1.2e-05       2      49 .]      65     114 ..      64     114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.4e-09
       SH3_9   2 lypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyve 49 
                 ly+y++ +   Ls++r+D++ v + ++ gW+ + +  + + G+ P+++ve
  CDO73135.1  65 LYDYDAEDNSQLSFRRNDILDVVKTEDTGWWAAVRpeDNTVGWIPSAFVE 114
                 8**********************999********98899*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5700.36
//
Query:       CDO73136.1  [L=207]
Description: hypothetical protein BN946_scf185007.g191 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-56  190.4   0.2    1.8e-56  190.2   0.2    1.0  1  Ras          Ras family
    4.1e-33  114.2   0.0    5.7e-33  113.7   0.0    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    4.2e-12   45.9   0.1    4.9e-12   45.6   0.1    1.1  1  Arf          ADP-ribosylation factor family
    3.4e-06   27.0   0.7      0.041   13.8   0.1    2.7  3  RsgA_GTPase  RsgA GTPase
    7.8e-06   25.4   0.0    9.4e-06   25.1   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    1.2e-05   25.3   0.0    2.2e-05   24.5   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    9.8e-05   22.0   0.0    0.00018   21.1   0.0    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
       0.01   16.2   0.1       0.02   15.3   0.1    1.6  1  AAA_16       AAA ATPase domain
       0.07   12.4   0.0       0.11   11.8   0.0    1.3  1  Septin       Septin
       0.17   11.3   0.0       0.38   10.1   0.0    1.5  2  TniB         Bacterial TniB protein


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.2   0.2   9.9e-60   1.8e-56       1     160 [.       8     166 ..       8     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.2 bits;  conditional E-value: 9.9e-60
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEE.EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgke.vkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeik 98 
                 Klvl+G+savGK+sl+lrfvkd+F++  esTig++f+t+++++++++ vk+eiwDTAGqe++k+  ++yyr+a+++++vydit+++s+e++k+w++e++
  CDO73136.1   8 KLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTVTLEDQTiVKFEIWDTAGQERYKA--PMYYRNANCAVVVYDITQASSLEKAKSWIRELQ 104
                 99*****************************************9766279************96..9******************************** PP

                 HHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 r+a+ +++i+L+GnK Dl+ +r+v++ee++++a+e gl++ etSAkt e+v+e+f+++++++
  CDO73136.1 105 RQADPSIVIALCGNKLDLAARRQVTQEEAKKYAEEEGLMWAETSAKTGEGVSEVFTAIAKKL 166
                 ****99*****************************************************987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   3.2e-36   5.7e-33       1     120 []       8     122 ..       8     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 3.2e-36
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH...HCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrss...enlk 96 
                 K+vl+G+s+vGK+sl+ rfv+d+f++ ++stig+ flt++v +++       ++ vk++iWDtaGqer+++  p+y+r+a++a++vyd ++    e++k
  CDO73136.1   8 KLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTV-TLED------QTIVKFEIWDTAGQERYKA--PMYYRNANCAVVVYDITQAsslEKAK 97 
                 99************************************987.3432......34699************96..9**************55431236889 PP

                 HHHHHHHHHCSSS-EE.EEEE-TTT CS
         Roc  97 eWlkelkkvagkspvi.lvgnkiDl 120
                 +W++el+++a+ s+vi l+gnk+Dl
  CDO73136.1  98 SWIRELQRQADPSIVIaLCGNKLDL 122
                 9********998876659*****95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1   2.7e-15   4.9e-12      12     173 ..       4     164 ..       1     166 [. 0.78

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 2.7e-15
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEETT...EEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveeleikn...lkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                 + +++++llG  + GK+ ++ ++ ++++++    Tig  f +++++ ++   +kf++wD  Gqe+ +     Y+++ +  + v D ++ + le+ak+ +
  CDO73136.1   4 QFQFKLVLLGESAVGKSSLVLRFVKDQFDDyRESTIGaaFLTQTVTLEDqtiVKFEIWDTAGQERYKA--PMYYRNANCAVVVYDITQASSLEKAKSWI 100
                 4579**********************9998556788743567888875433489**********8776..68*************************** PP

                 HHHCTSGCCTTSEEEEEEE-TTSTTS..S-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 105 kalleeeelkevallvlaNKqDlpea..lseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 ++l ++ + + +++ + +NK Dl+    +++ee ++  + e       l  +++sa +geg++e ++ +++
  CDO73136.1 101 RELQRQADPS-IVIALCGNKLDLAARrqVTQEEAKKYAEEE------GLMWAETSAKTGEGVSEVFTAIAK 164
                 **97777655.566678*****9764103444444444444......4557899*********99998876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00025      0.45     102     121 ..       9      28 ..       3      42 .. 0.84
   2 ?    1.3   0.0      0.16   2.9e+02      61      99 ..      66     102 ..      41     107 .. 0.74
   3 !   13.8   0.1   2.3e-05     0.041      37     101 ..     101     166 ..      73     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
                  EEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallp 121
                   vl+G+S vGKS+L+ +++ 
   CDO73136.1   9 LVLLGESAVGKSSLVLRFVK 28 
                  699***********977665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
                  HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  61 eeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  +e+   +    +++++++v++ + ++ ++le+ k+++++
   CDO73136.1  66 QER--YKAPMYYRNANCAVVVYDITQASSLEKAKSWIRE 102
                  333..556678999***********99999999999876 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.3e-05
                  HHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  37 rfLvlaeekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkellkdkt 101
                  r L    +  i + ++ nK+Dl+ +++ + ee k+  e+ g+    +sakt+eg++e+ +++++k+
   CDO73136.1 101 RELQRQADPSIVIALCGNKLDLAARRQvTQEEAKKYAEEEGLMWAETSAKTGEGVSEVFTAIAKKL 166
                  55555556667778888********997778888888999*****************999998875 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   5.3e-09   9.4e-06       1     141 [.       8     137 ..       8     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.3e-09
   Gtr1_RagA   1 kvLLmGksgsGKtsmr.sii...FdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedl 95 
                 k++L+G+s  GK+s+  + +   Fd y      ++ga+  ++  +++    +++++wD  Gqe++ + ++ ++      n++v++y  D++     ++l
  CDO73136.1   8 KLVLLGESAVGKSSLVlRFVkdqFDDYR---ESTIGAAFLTQTVTLEDQTIVKFEIWDTAGQERYKAPMYYRN-----ANCAVVVY--DIT---QASSL 93 
                 899***********86233422244443...334444444444444445559*************99973333.....45666666..888...56788 PP

   Gtr1_RagA  96 etlkeileal.rqyspeakvfvlihKmDliqedereeifeerkeeir 141
                 e+ k+ +++l rq +p + +    +K+Dl +   r+++ +e+++++ 
  CDO73136.1  94 EKAKSWIRELqRQADPSIVIALCGNKLDLAA---RRQVTQEEAKKYA 137
                 888888888735789999999999****984...4444444444433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-08   2.2e-05       2     109 ..       9     111 ..       8     119 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-08
                 EEEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTT.CSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.....kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdasee.klkpld 94 
                  +++G + vGKS+L+ + +++     +  +   ++ T++++ +  +    ++e++Dt+G  e     +  +  +   ++a+ +++v d++++ +l++ +
  CDO73136.1   9 LVLLGESAVGKSSLVLRFVKDqfddyRESTIGAAFLTQTVTLEDQT--IVKFEIWDTAG-QE-----RYKAPMYY--RNANCAVVVYDITQAsSLEKAK 97 
                 6899***************954433444555556666666666554..357********.44.....32233333..3456666666666331455555 PP

                 HHHHHHHHHTTSEEE CS
    MMR_HSR1  95 eeleelleeakkpli 109
                 + + el++ + +p i
  CDO73136.1  98 SWIRELQR-QADPSI 111
                 55555543.333433 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     1e-07   0.00018      54     193 ..      41     167 ..      11     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1e-07
                 SCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHH.HHHHHHHHHHTTTE...EEEEEESCGSTHHHHHHHHHHHHH CS
    GTP_EFTU  54 iTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepq.teevlrlalkegvp...iivfiNKmDrlkaelkeiveevkq 148
                     +++++le +++  ++ + Dt G + +   ++  +r +++av+v d+++       +  +r ++++  p   i ++ NK+D +    + ++ee+k 
  CDO73136.1  41 AAFLTQTVTLE-DQTIVKFEIWDTAGQERYKAPMY--YRNANCAVVVYDITQASSLEkAKSWIRELQRQADPsivIALCGNKLDLAAR-RQVTQEEAK- 134
                 33344555555.89999****************98..7999*********988444403444444444444453255566****9744.445555555. PP

                 HHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 149 klsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 k+          +e++      + +Sa++gegv++++ a+ ++lp
  CDO73136.1 135 KY----------AEEE--GLMWAETSAKTGEGVSEVFTAIAKKLP 167
                 44..........2332..478999****************99998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   1.1e-05      0.02      27     107 ..       9      95 ..       6     175 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala................... 106
                 ++l Ges+vGKsslv ++ +            ++d++++    s++  a+ + + +  l+d++   ++e w+++ +e+++                   
  CDO73136.1   9 LVLLGESAVGKSSLVLRFVK-----------DQFDDYRE----STIGAAFLT-QTV-TLEDQT-IVKFEIWDTAGQERYKapmyyrnancavvvyditq 89 
                 5799***********55554...........45666622....234444422.333.333342.33666677766666666666666655555555443 PP

      AAA_16 107 .....a 107
                       
  CDO73136.1  90 assleK 95 
                 332220 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     6e-05      0.11       1      51 [.       3      53 ..       3      66 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
                XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEE CS
      Septin  1 kgieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkk 51
                k ++f l++ Ges++Gk++l+  +++++  + ++ +  +   ++tv+++ +
  CDO73136.1  3 KQFQFKLVLLGESAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTVTLEDQ 53
                579*******************99999887776555555555555555544 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00021      0.38      38      64 ..       9      35 ..       3      52 .. 0.85
   2 ?   -3.6   0.0       3.5   6.2e+03     140     159 ..      94     113 ..      87     120 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
        TniB 38 lllvGdsnnGKtmivekFarlhppekd 64
                l+l+G+s++GK+++v +F +++ ++ +
  CDO73136.1  9 LVLLGESAVGKSSLVLRFVKDQFDDYR 35
                789****************99876654 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.5
        TniB 140 reflnalksLgnelkipivl 159
                 +++   ++ L+++ + +iv+
  CDO73136.1  94 EKAKSWIRELQRQADPSIVI 113
                 55556677777777666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 1383.79
//
Query:       CDO73137.1  [L=676]
Description: hypothetical protein BN946_scf185007.g192 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-14   53.1   0.0    1.1e-08   34.8   0.0    2.4  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    0.00026   20.6   0.0       0.93    9.1   0.0    2.5  2  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.2e-12   1.1e-08       7      69 ..     188     246 ..     177     247 .. 0.85
   2 !   16.0   0.0   8.9e-07     0.008      10      64 ..     286     336 ..     283     341 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.2e-12
                 TTTSSHHHHHHHHHTTSCEEEE.EEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   7 ppdvteeeLkelFskfGpiksi.klvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                  ++++ +++++lF++ G+ik++ +l+      ++g+ fV++ + ++Ae+A e+l+g ++ gr++
  CDO73137.1 188 FYETNSDDVRRLFEEHGDIKTFfDLIA-----NRGMVFVTYYDLRAAERARERLQGSEISGRPI 246
                 589****************77615555.....7*****************************98 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.9e-07
                 SSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1  10 vteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 +++eeL++ F++fG++ks++ v d          VeF + ++ e+A e+l ++ l
  CDO73137.1 286 IDDEELRRKFQQFGDVKSVRPVGD----RPDQRLVEFYDTRASEEAHERLRHQGL 336
                 799********************9....777889999999999999999887765 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00014       1.2      39      99 ..     191     251 ..     187     256 .. 0.93
   2 !    9.1   0.0    0.0001      0.93      48     116 ..     295     363 ..     276     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00014
       RRM_5  39 vnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalS 99 
                  n d +  lf   g+++    l   ++  +v   d +a+era++ L++ ++ g++++v  S
  CDO73137.1 191 TNSDDVRRLFEEHGDIKTFFDLIANRGMVFVTYYDLRAAERARERLQGSEISGRPIDVHYS 251
                 6888999999999***99999999********************************99887 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0001
       RRM_5  48 fclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqavsekepfeledds 116
                 f ++g+v+ v+ +  ++++ lv+  d++a e a + L  + l +  +++++    +  ++  f+  d++
  CDO73137.1 295 FQQFGDVKSVRPVGDRPDQRLVEFYDTRASEEAHERLRHQGLQDGVMDIVFAYTGTDEPQTSFQHRDHQ 363
                 789****************************************99***999988887678888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4563.39
//
Query:       CDO73138.1  [L=132]
Description: hypothetical protein BN946_scf185007.g193 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1006.47
//
Query:       CDO73139.1  [L=161]
Description: hypothetical protein BN946_scf185007.g194 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-10   42.1   0.0    1.6e-10   41.8   0.0    1.1  1  Metallophos    Calcineurin-like phosphoesterase
    8.8e-07   29.3   0.0    1.2e-06   28.8   0.0    1.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.045   13.6   0.0       0.32   10.9   0.0    2.1  3  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   2.7e-14   1.6e-10       2      95 ..      50     133 ..      49     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2.7e-14
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEE.EEEC-TTS.CHHHHHHHHHHHHHHH.HHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipv.ylllGNHe.gfeeellnkygylgif.sepw 95 
                  ri++i+D+H      q+++l +l        + d++++aGDl++ g +e+ l + l++l ++p+p+  +++GNH+ +++++ + +++ l  f s ++
   CDO73139.1  50 RIVCISDTH-----SQHAKLGTLP-------DGDVLIHAGDLTHSGTPEE-LRDALQWLASQPHPHkLFIAGNHDrALDDSEPTRQALLDAFpSLTY 133
                  8********.....*******988.......88*****************.**********988889********8666666666666666644443 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     2e-10   1.2e-06       2      96 ..      50     150 ..      49     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2e-10
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepevleellela......pvlaVrGNnD.....eev.veedvlreaaelgtdlpee 84 
                    +++ iSD+Hs+ + l ++++       d +ihaGDl   ++pe l+++l+ +        l + GN+D     + +  ++++l+++  l+   +++
     CDO73139.1  50 RIVCISDTHSQHAKLGTLPDG------DVLIHAGDLtHSGTPEELRDALQWLasqphpHKLFIAGNHDralddS-EpTRQALLDAFPSLTYLQQAA 138
                    6899*****877777777776......99*******98888976666666556766988899******999743.3599999999999988888** PP

  Metallophos_2  85 aelelagekvll 96 
                    a+l+++g+++ +
     CDO73139.1 139 ATLSIRGRTLRI 150
                    ****99988655 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.4e-05      0.32      27      57 ..      39      69 ..      16      85 .. 0.72
   2 ?   -0.6   0.0      0.18   1.1e+03     106     123 ..      71      88 ..      68      93 .. 0.76
   3 ?   -0.7   0.0      0.19   1.1e+03       1      19 [.     130     148 ..     130     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.4e-05
  Lactamase_B_3 27 nlgyeppaeeaDlvlisqaledHahletlkq 57
                   ++++ p+++ + +v+is  ++ Ha+l tl+ 
     CDO73139.1 39 ETKTPPNEVPVRIVCISDTHSQHAKLGTLPD 69
                   5667777799******************998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
  Lactamase_B_3 106 ltiyhlGhlahelsseel 123
                      ++h G+l h  + eel
     CDO73139.1  71 DVLIHAGDLTHSGTPEEL 88 
                    5689******97777766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.19
  Lactamase_B_3   1 eltwlghnsflletagari 19 
                    +lt+l +++  l+++g ++
     CDO73139.1 130 SLTYLQQAAATLSIRGRTL 148
                    599*****99999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1192.24
//
Query:       CDO73140.1  [L=356]
Description: hypothetical protein BN946_scf185007.g195 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2492.01
//
Query:       CDO73141.1  [L=479]
Description: hypothetical protein BN946_scf185007.g196 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-64  215.8   0.0      5e-59  199.4   0.0    2.1  2  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.6e-07     0.014       3      32 ..      94     123 ..      92     147 .. 0.84
   2 !  199.4   0.0   2.8e-63     5e-59      40     253 ..     211     428 ..     198     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.6e-07
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHS CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealk 32 
                       l+e+++y++ ++ K+lRpllvll+++a++
       CDO73141.1  94 SLTEIAKYYFLHPSKQLRPLLVLLFSQATN 123
                      6899************************98 PP

  == domain 2  score: 199.4 bits;  conditional E-value: 2.8e-63
                      HHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT CS
  polyprenyl_synt  40 kaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafellaklfekslellelfsevllqtveGqlldleeekdd 133
                      ++ +la+ive++h+asL+hDD++D+s +RRG+p+a  ++Gnkl++++gdfll+r +  l++l  ++ e++el++ v++++veG++l+l++ + +
       CDO73141.1 211 TQVRLAQIVEMIHVASLLHDDVIDKSPLRRGAPSAPVAFGNKLSVLAGDFLLGRTSAALSRL--GENEVVELIASVIANLVEGEILQLKSMHAE 302
                      5789**********************************************************..889*********************555433 PP

                      TCC.........C.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT-- CS
  polyprenyl_synt 134 dls.........kfsleeyleivkyKTaylfalpvalaallagasdeel..ealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkc 216
                      +l          +++++ yl++++ KTa+l+a  +++a++l+g++d e+  e ++ +g++lG+aFQ++DD+lD+ + +++lgKp g+D+q g +
       CDO73141.1 303 ELGivglspkvgQENWNIYLQKTYLKTASLMAKGARAAVVLGGCKDGEVwkEVAYAYGRNLGIAFQLVDDILDYEAGDATLGKPGGADLQLGLA 396
                      333444444444999****************************998443369****************************************** PP

                      -HHHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHHHHH CS
  polyprenyl_synt 217 tlpilkalelaspeqrkvlkeilgkkaekeedvkeal 253
                      t p+l+a+e ++pe    +  ++++k+e+++dv+ a 
       CDO73141.1 397 TGPALFAWE-EHPE----MGPLIKRKFEQPGDVELAR 428
                      *********.6666....99***********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3483.07
//
Query:       CDO73142.1  [L=451]
Description: hypothetical protein BN946_scf185007.g197 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3104.26
//
Query:       CDO73143.1  [L=397]
Description: hypothetical protein BN946_scf185007.g198 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2606.85
//
Query:       CDO73144.1  [L=202]
Description: hypothetical protein BN946_scf185007.g199 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1392.40
//
Query:       CDO73145.1  [L=130]
Description: hypothetical protein BN946_scf185007.g200 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-09   38.1   1.7    1.7e-09   37.9   1.7    1.1  1  SIKE            SIKE family
  ------ inclusion threshold ------
      0.052   13.7   4.6       0.12   12.5   4.6    1.8  1  Cnn_1N          Centrosomin N-terminal motif 1
       0.18   12.3   6.1       0.11   13.0   2.0    2.0  2  ZapB            Cell division protein ZapB
       0.24   11.5   5.9       0.88    9.7   1.9    2.3  2  bZIP_1          bZIP transcription factor
       0.25   11.6   0.3       0.25   11.6   0.3    2.0  2  Hpt             Hpt domain
          1    9.5   5.0       0.78    9.9   2.3    2.1  2  NYD-SP28_assoc  Sperm tail C-terminal domain
        1.3    9.7   6.1        1.1   10.0   3.0    1.9  2  YabA            Initiation control protein YabA


Domain annotation for each model (and alignments):
>> SIKE  SIKE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   1.7   6.5e-13   1.7e-09      19     108 ..      24     113 ..       4     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 6.5e-13
        SIKE  19 kehdtaAdsLleqaqalnkkiesmkqyqeevkeln.eiakekprseLiagiqqenrqi....reLqqENreLrasleehqsaLelImsKYReqvs 108
                   + ++A +L +qa++l+++ +s +   + ++ +n +i+ke  +seL    +++n+qi    + L qEN++L a l e+++++e +msK+R +v 
  CDO73145.1  24 ALNLKMASTLASQAHSLKSEAQSVASGYN-LRRVNlDISKETFESEL----ERQNAQIvienHTLLQENKQLSALLHEYEKTMETVMSKFRAHVP 113
                 33457899999999999999999884333.45555566666666666....666666644446899**************************985 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.6   4.7e-05      0.12      30      72 ..      58     100 ..      14     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
      Cnn_1N  30 leklseeqkeellkenielkveveslqkelkekkkllreaeka 72 
                 l+ ++e+   el+++n ++ +e+++l +e+k++  ll+e ek 
  CDO73145.1  58 LDISKETFESELERQNAQIVIENHTLLQENKQLSALLHEYEKT 100
                 5556668899******************************997 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1       0.2   5.2e+02      32      49 ..      28      45 ..      13      53 .. 0.50
   2 ?   13.0   2.0   4.3e-05      0.11      28      70 ..      67     109 ..      65     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.2
        ZapB 32 eeneelkeenreleeene 49
                +  ++l++++  l++e +
  CDO73145.1 28 KMASTLASQAHSLKSEAQ 45
                222445555555554444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.3e-05
        ZapB  28 eeLkeeneelkeenreleeeneqlkeereawqerlkkLLgkle 70 
                 +eL+++n++   en  l +en+ql +   + ++ +++++ k++
  CDO73145.1  67 SELERQNAQIVIENHTLLQENKQLSALLHEYEKTMETVMSKFR 109
                 59**********************************9999986 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.031        81      35      50 ..      30      45 ..      15      55 .. 0.54
   2 ?    9.7   1.9   0.00034      0.88      29      55 ..      67      93 ..      62     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.031
                HHHHHHHHHHHHHHHH CS
      bZIP_1 35 vkaLekeNksLksele 50
                +++L ++ +sLkse++
  CDO73145.1 30 ASTLASQAHSLKSEAQ 45
                2345555555555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00034
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 29 eeLerrvkaLekeNksLkseleelkke 55
                +eLer+ +++  eN++L +e+++l+  
  CDO73145.1 67 SELERQNAQIVIENHTLLQENKQLSAL 93
                699*******************99865 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   9.9e-05      0.25      12      43 ..      14      47 ..       9      50 .. 0.86
   2 ?   -0.6   0.4      0.64   1.6e+03      25      29 ..      86      90 ..      62     102 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.9e-05
                HHHHHH..HHHHSCCHHHHHHHHHHHHHHHHHHT CS
         Hpt 12 elleql..eqaldqedlqelaraaHtLKGsagml 43
                ++l++l  ++al+ +  + la+ aH+LK+ a ++
  CDO73145.1 14 QCLQDLseQNALNLKMASTLASQAHSLKSEAQSV 47
                567777768899999**************99987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
                HHHHH CS
         Hpt 25 dlqel 29
                 +++l
  CDO73145.1 86 ENKQL 90
                22222 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.7   1.8e+03      18      30 ..      13      25 ..       3      46 .. 0.55
   2 ?    9.9   2.3    0.0003      0.78      34      59 ..      72      97 ..      63      97 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.7
  NYD-SP28_assoc 18 WdalekaLekYhe 30
                    W+ l +  e+   
      CDO73145.1 13 WQCLQDLSEQNAL 25
                    4444444444333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0003
  NYD-SP28_assoc 34 eRaklieetesLekqNeeLrnlLkqy 59
                    + a+++ e++ L ++N++L  lL++y
      CDO73145.1 72 QNAQIVIENHTLLQENKQLSALLHEY 97
                    5589999******************9 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.24   6.2e+02      19      39 ..      25      45 ..       4      66 .. 0.50
   2 ?   10.0   3.0   0.00042       1.1      25      61 ..      67     103 ..      51     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHHHHHHH CS
        YabA 19 elleeleelkeelaelleena 39
                  l+  ++l ++ ++l  e +
  CDO73145.1 25 LNLKMASTLASQAHSLKSEAQ 45
                222222333333322222222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX CS
        YabA  25 eelkeelaelleenaeLeleneklrerleeeekkeke 61 
                 +el+++ a+++ en++L  en++l  +l+e ek+ ++
  CDO73145.1  67 SELERQNAQIVIENHTLLQENKQLSALLHEYEKTMET 103
                 57999999********************766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1610  (0.0897987); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 959.45
//
Query:       CDO73146.1  [L=255]
Description: hypothetical protein BN946_scf185007.g201 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-08   34.0   0.1    3.2e-08   33.3   0.1    1.3  1  NCBP3     Nuclear cap-binding protein subunit 3
     0.0061   16.6   0.1      0.012   15.7   0.1    1.4  1  RNA_bind  RNA binding domain
  ------ inclusion threshold ------
      0.042   13.9   0.0      0.067   13.2   0.0    1.3  1  RRM_3     RNA binding motif


Domain annotation for each model (and alignments):
>> NCBP3  Nuclear cap-binding protein subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   5.4e-12   3.2e-08      12      56 ..      23      67 ..      13      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 5.4e-12
       NCBP3 12 dnLstedikaYvdeylnyeepfriEWIdDtsvnvvFkseedaakA 56
                ++L+t di+a +++  + +  f+i WI+Dts  +vF+++  a++A
  CDO73146.1 23 KELKTRDIQAAFSDWDTVNGGFKIKWINDTSLLIVFNDATVAKRA 67
                57*****************************************99 PP

>> RNA_bind  RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     2e-06     0.012      16      52 ..      21      61 ..      12      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-06
                --TT--HHHHHHHTTTS....EEEEEEEEETTEEEEEEEEE CS
    RNA_bind 16 FPkeWktsDivqlFspf....GsvyvsWlddtsAfvaLhrr 52
                F ke kt Di+  Fs +    G  +++W++dts  +  +  
  CDO73146.1 21 FSKELKTRDIQAAFSDWdtvnGGFKIKWINDTSLLIVFNDA 61
                99************98744447779********98877655 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.067       3      97 ..      15     116 ..      14     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                 EEEEEE-SSS--HHHHHHHCHCCS......-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHHC.....-B-CCTSSEEEEE--HHHHHHHHHHHHHHH CS
       RRM_3   3 ilklsGlnkelsredikellsklg......evayvdyekgdkegevrFkedeeakkalekatea.....klkikdaevtlelLeGeeEkeywkkiledk 90 
                 il l+G++kel+ +di+ ++s ++      +++++    +d++  + F+++  ak+a  +a ++        +    v+++  +G   +e  + +++++
  CDO73146.1  15 ILSLTGFSKELKTRDIQAAFSDWDtvnggfKIKWI----NDTSLLIVFNDATVAKRAYLHALAFppsifTSPNTSTVVSIKPYDGPDAQEIIQSVNARQ 109
                 899*********************55555555565....69999*******99****999999988776667778888999999999999999999999 PP

                 HHCC--- CS
       RRM_3  91 qkkknna 97 
                 +++  ++
  CDO73146.1 110 HNSSGRG 116
                 9887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1841.45
//
Query:       CDO73147.1  [L=540]
Description: hypothetical protein BN946_scf185007.g202 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-11   44.1  16.6    0.00011   21.9   2.3    6.1  6  TPR_1     Tetratricopeptide repeat
    1.2e-09   37.6  21.8    0.00063   19.7   2.7    5.9  5  TPR_2     Tetratricopeptide repeat
    1.1e-07   31.5  13.1    7.4e-06   25.6   2.9    4.4  5  TPR_11    TPR repeat
    0.00012   22.3  12.1      0.053   13.9   1.2    4.3  4  TPR_17    Tetratricopeptide repeat
    0.00037   21.1  16.8     0.0012   19.5   7.4    4.0  3  TPR_16    Tetratricopeptide repeat
     0.0036   17.4  11.9        2.1    8.8   0.7    4.9  4  TPR_8     Tetratricopeptide repeat
     0.0066   16.9  18.1     0.0095   16.4   2.7    4.2  4  TPR_19    Tetratricopeptide repeat
      0.008   16.9  14.6      0.077   13.8   4.7    5.3  4  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   14.1   0.7      0.028   13.4   0.7    1.3  1  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
      0.025   15.3   2.0      0.058   14.1   2.0    1.6  1  DUF4439   Domain of unknown function (DUF4439)
       0.56   10.4   4.7       0.54   10.4   1.9    2.4  3  TPR_9     Tetratricopeptide repeat
       0.82    9.6   5.0         20    5.2   2.7    3.4  4  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00062      0.92       6      33 ..      16      43 ..      11      44 .. 0.88
   2 !   21.9   2.3   7.3e-08   0.00011       1      34 []      45      78 ..      45      78 .. 0.95
   3 !   12.4   0.0     7e-05       0.1       2      32 ..      80     110 ..      79     111 .. 0.93
   4 ?   -0.8   0.0       1.1   1.6e+03      18      28 ..     301     311 ..     300     313 .. 0.77
   5 ?    2.5   0.0     0.095   1.4e+02       1      15 [.     407     421 ..     407     422 .. 0.94
   6 ?    3.1   0.4      0.06        90      15      32 ..     435     452 ..     432     454 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00062
                HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  6 nlGnayfklgkydeAleyyekALelnPn 33
                  Gn ++++g++  A   y +A++l+ +
  CDO73147.1 16 AEGNELHSKGNHAAARSKYTEAIKLDGE 43
                569**********************976 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 7.3e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPnn 34
                a  + n+++ay  + +y +A ++ ++A+e++Pn+
  CDO73147.1 45 AILYANRAAAYIAQRQYLDAAKDAQRAVEVDPNY 78
                5679****************************97 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 ka+ +l+ a f+l  ++  +++ +kALe  P
  CDO73147.1  80 KAWARLAKASFELRAFQPSIDAWKKALETLP 110
                 8**************************9766 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHH CS
       TPR_1  18 deAleyyekAL 28 
                   Al+yy+  L
  CDO73147.1 301 ANALQYYNSIL 311
                 57*****9766 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.095
                 HHHHHHHHHHHHHTT CS
       TPR_1   1 akalynlGnayfklg 15 
                 a+a+  lG++++++g
  CDO73147.1 407 ADAHATLGAIFMQQG 421
                 89************9 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.06
                 T-HHHHHHHHHHHHHHST CS
       TPR_1  15 gkydeAleyyekALelnP 32 
                 +++  A ++y+kA e +P
  CDO73147.1 435 NMLAAASKFYKKAAEMYP 452
                 5678899*******9998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.9e-05     0.058       4      34 .]      14      44 ..      11      44 .. 0.90
   2 !   19.7   2.7   4.2e-07   0.00063       1      34 []      45      78 ..      45      78 .. 0.95
   3 !   10.4   0.0    0.0004      0.59       2      32 ..      80     110 ..      79     112 .. 0.93
   4 ?    0.5   0.0      0.58   8.7e+02       1      15 [.     407     421 ..     407     422 .. 0.93
   5 ?    4.0   0.3     0.045        68      15      33 ..     435     453 ..     428     454 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPnn 34
                l + G+ +  +g+++ A+  + +A++ld +n
  CDO73147.1 14 LKAEGNELHSKGNHAAARSKYTEAIKLDGEN 44
                667899*********************9776 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.2e-07
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                a ++ n++ ay+++ +y +A+++ ++A+e dPn+
  CDO73147.1 45 AILYANRAAAYIAQRQYLDAAKDAQRAVEVDPNY 78
                67899***************************96 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0004
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 +a+ +l++a ++l  ++  ++a++kAle  P
  CDO73147.1  80 KAWARLAKASFELRAFQPSIDAWKKALETLP 110
                 79*************************9777 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.58
       TPR_2   1 aealynlGlayyklg 15 
                 a+a+  lG + +++g
  CDO73147.1 407 ADAHATLGAIFMQQG 421
                 789**********98 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.045
       TPR_2  15 gdyeeAleafekAleldPn 33 
                 + ++ A ++++kA e +P 
  CDO73147.1 435 NMLAAASKFYKKAAEMYPP 453
                 5678899*********995 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   2.9   4.9e-09   7.4e-06       1      40 [.      18      57 ..      18      59 .. 0.96
   2 !    8.8   0.8   0.00088       1.3       3      39 ..      54      90 ..      54      92 .. 0.88
   3 ?   -2.0   0.0       2.1   3.1e+03      14      22 ..      99     107 ..      97     111 .. 0.84
   4 ?    2.8   0.0     0.062        92      28      42 .]     407     421 ..     407     421 .. 0.96
   5 ?   -3.3   0.1       5.2   7.7e+03      12      22 ..     439     449 ..     435     452 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.9e-09
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40
                G++++++G+  +A  +Y +A+kld +na +y n+++ay +
  CDO73147.1 18 GNELHSKGNHAAARSKYTEAIKLDGENAILYANRAAAYIA 57
                9*************************************66 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00088
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39
                ay +q +y +A ++ ++A++ dP++  a+  L++a +
  CDO73147.1 54 AYIAQRQYLDAAKDAQRAVEVDPNYSKAWARLAKASF 90
                688888999999999******************9966 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.1
      TPR_11  14 ieaYkkAlk 22 
                 i a+kkAl+
  CDO73147.1  99 IDAWKKALE 107
                 8899***97 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.062
      TPR_11  28 aeayynLGlayykqG 42 
                 a+a+  LG+++++qG
  CDO73147.1 407 ADAHATLGAIFMQQG 421
                 79************9 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 5.2
      TPR_11  12 eAieaYkkAlk 22 
                 +A + YkkA +
  CDO73147.1 439 AASKFYKKAAE 449
                 67778999965 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2   3.5e-05     0.053       2      32 ..      34      64 ..      33      66 .. 0.92
   2 !   12.9   0.0   7.3e-05      0.11       3      22 ..      69      88 ..      67      93 .. 0.91
   3 ?   -1.7   0.0       3.5   5.3e+03      13      26 ..     407     427 ..     407     434 .. 0.62
   4 ?   -0.2   0.1       1.2   1.7e+03       1      12 [.     443     454 ..     443     466 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtA 32
                y++a++ld  na +y n+A ++  + ++ +A
  CDO73147.1 34 YTEAIKLDGENAILYANRAAAYIAQRQYLDA 64
                99*********************99998766 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7.3e-05
      TPR_17  3 lkaleldPnnadaynnLAel 22
                ++a+e dPn+++a+  LA++
  CDO73147.1 69 QRAVEVDPNYSKAWARLAKA 88
                89****************86 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.5
      TPR_17  13 adaynnLAelll.......kn 26 
                 ada+  L+ ++        ++
  CDO73147.1 407 ADAHATLGAIFMqqglgakQA 427
                 689999999998444444444 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.2
      TPR_17   1 lylkaleldPnn 12 
                 +y+ka+e +P +
  CDO73147.1 443 FYKKAAEMYPPD 454
                 59*****99754 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.7     0.024        35       5      43 ..      19      54 ..      16      55 .. 0.78
   2 !   19.5   7.4   7.9e-07    0.0012       2      67 ..      50     112 ..      49     113 .. 0.93
   3 ?    1.7   0.4      0.28   4.2e+02      49      67 ..     435     454 ..     405     455 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.024
      TPR_16  5 raalragdyddAaaaleaalkrdpssPdaaeAllllgda 43
                +++   g+ ++A+  +++a+k+d    ++a  + +++ a
  CDO73147.1 19 NELHSKGNHAAARSKYTEAIKLD---GENAILYANRAAA 54
                55556799999999999999999...8888888888776 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 7.9e-07
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 ++a a++++++y dAa+ +++a++ d   P    A+  l+ a +++  +++ +++ ++al+  p+a
  CDO73147.1  50 NRAAAYIAQRQYLDAAKDAQRAVEVD---PNYSKAWARLAKASFELRAFQPSIDAWKKALETLPSA 112
                 6799**********************...************************8888888888865 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.28
      TPR_16  49 rlaeAa.alyraalraapda 67 
                 ++ +Aa  +y++a++ +p +
  CDO73147.1 435 NMLAAAsKFYKKAAEMYPPD 454
                 45567777777777777765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0045       6.8       8      33 ..      18      43 ..      16      44 .. 0.90
   2 !    8.8   0.7    0.0014       2.1       3      34 .]      47      78 ..      45      78 .. 0.95
   3 ?    1.4   0.0      0.32   4.7e+02       2      29 ..      80     107 ..      79     108 .. 0.89
   4 ?    4.4   0.4     0.035        53      16      32 ..     436     452 ..     432     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0045
                HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldpd 33
                g+ ++++g++ +A + y +a++ld +
  CDO73147.1 18 GNELHSKGNHAAARSKYTEAIKLDGE 43
                677899*****************976 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34
                +y n + +y+ + +y  A +  ++a+e dp++
  CDO73147.1 47 LYANRAAAYIAQRQYLDAAKDAQRAVEVDPNY 78
                699***************************85 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.32
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +a+ +l+++ ++l  ++ ++ + +kale
  CDO73147.1  80 KAWARLAKASFELRAFQPSIDAWKKALE 107
                 79**********9999999999999987 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.035
                 -HHHHHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekaleldp 32 
                  + +A ++y+ka e+ p
  CDO73147.1 436 MLAAASKFYKKAAEMYP 452
                 5789**********998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   3.7   0.00017      0.26       4      44 ..      24      64 ..      21      66 .. 0.93
   2 !   16.4   2.7   6.3e-06    0.0095       2      56 ..      56     110 ..      55     125 .. 0.82
   3 ?   -3.1   0.1       7.7   1.1e+04       7      19 ..     300     312 ..     300     314 .. 0.81
   4 ?    3.0   0.2       0.1   1.5e+02       4      24 ..     434     454 ..     425     469 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
      TPR_19  4 egdyaeAlalleqalqedpknaearllLAeallalgqldeA 44
                 g++a+A + +++a++ d +na + ++ A a++a+ q+ +A
  CDO73147.1 24 KGNHAAARSKYTEAIKLDGENAILYANRAAAYIAQRQYLDA 64
                69***********************************9888 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.3e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +a+ +y +A++  ++a + dp+++ a+++LA+a ++l  ++  +++ ++++e  p
  CDO73147.1  56 IAQRQYLDAAKDAQRAVEVDPNYSKAWARLAKASFELRAFQPSIDAWKKALETLP 110
                 79*******************************9999888776666666665555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.7
      TPR_19   7 yaeAlalleqalq 19 
                 +a+Al+++ ++l+
  CDO73147.1 300 HANALQYYNSILA 312
                 6899999999876 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.1
      TPR_19   4 egdyaeAlalleqalqedpkn 24 
                 e+ +a+A +++++a + +p +
  CDO73147.1 434 ENMLAAASKFYKKAAEMYPPD 454
                 455677777777777777655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.26   3.8e+02      10      38 ..      20      48 ..      11      52 .. 0.80
   2 !   13.8   4.7   5.2e-05     0.077       4      43 ..      48      87 ..      45      88 .. 0.93
   3 !    8.9   0.3     0.002         3       2      34 ..      80     112 ..      79     125 .. 0.91
   4 ?    3.2   0.2      0.13     2e+02       8      36 ..     421     449 ..     407     452 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.26
      TPR_14 10 allalGdpdeAiallrralalaPddaeaw 38
                 l   G++++A+  + +a++l+ ++a ++
  CDO73147.1 20 ELHSKGNHAAARSKYTEAIKLDGENAILY 48
                566789***************99998766 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.2e-05
      TPR_14  4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43
                ++ +a+a+ a++++ +A++ ++ra++ +P+   aw +la+
  CDO73147.1 48 YANRAAAYIAQRQYLDAAKDAQRAVEVDPNYSKAWARLAK 87
                6779**********************************98 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.002
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +a+++la+a ++l+ ++ +i++ ++al++ P+ 
  CDO73147.1  80 KAWARLAKASFELRAFQPSIDAWKKALETLPSA 112
                 69**************************99975 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.13
      TPR_14   8 aeallalGdpdeAiallrralalaPddae 36 
                 +    ++Gd  eA+++l +a + + + ae
  CDO73147.1 421 GLGAKQAGDKVEAENMLAAASKFYKKAAE 449
                 444567888889********998888776 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   1.9e-05     0.028     240     312 ..      51     130 ..      30     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
                 HHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHT.......T-HHHHHHHHHT----SS--------SS--- CS
       ChAPs 240 qaefllskkkeelAlevakravksaPsefktWalLvkvYikl.......edienALltLNscPmftykekdvlrriapak 312
                 +a   + ++++  A + a+rav++ P+ +k Wa+L+k   +l       + +++AL tL s  +++ +e+   +  + +k
  CDO73147.1  51 RAAAYIAQRQYLDAAKDAQRAVEVDPNYSKAWARLAKASFELrafqpsiDAWKKALETLPSADLTPQQEQLKQQYEEGLK 130
                 45555566677778889*******************99877622222225689999999999999888876666555555 PP

>> DUF4439  Domain of unknown function (DUF4439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.0   3.9e-05     0.058      37      97 ..      26      89 ..      11     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.9e-05
     DUF4439 37 aHrarrdalaallsargatp...paaeaaYelpfevtdaasaarlaaelEedlaaayaalvaad 97
                +H a r +  ++++ +g+++    +++aaY    ++ daa+ a+ a+e++ +  +a+a l++a+
  CDO73147.1 26 NHAAARSKYTEAIKLDGENAilyANRAAAYIAQRQYLDAAKDAQRAVEVDPNYSKAWARLAKAS 89
                799999999999999999863436899*********************************9543 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.9   0.00036      0.54       3      62 ..      53     112 ..      25     125 .. 0.83
   2 ?   -1.6   0.0         2     3e+03      12      24 ..     301     313 ..     295     336 .. 0.62
   3 ?   -3.7   0.1       9.2   1.4e+04      35      49 ..     339     353 ..     338     356 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 a++i ++++  a + ++r + ++P+    +   + + ++l +++  +++   +l+  p+a
  CDO73147.1  53 AAYIAQRQYLDAAKDAQRAVEVDPNYSKAWARLAKASFELRAFQPSIDAWKKALETLPSA 112
                 578999999999999999999999999999999999999999999999888888777744 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
       TPR_9  12 eralavverllll 24 
                 + al++++++l++
  CDO73147.1 301 ANALQYYNSILAV 313
                 5677777777765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.2
       TPR_9  35 RGlllaqlGclsaAl 49 
                 R++ + +++++ +Al
  CDO73147.1 339 RAIRRLKMDAYLGAL 353
                 677788899999987 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   3.6e+03      12      23 ..      21      32 ..      18      41 .. 0.56
   2 ?    5.2   2.7     0.013        20       5      30 ..      48      73 ..      45      74 .. 0.92
   3 ?   -3.6   0.0       7.7   1.1e+04      26      37 ..      96     107 ..      93     108 .. 0.76
   4 ?    2.4   0.0       0.1   1.5e+02      13      35 ..     425     447 ..     421     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.4
      TPR_10 12 lrqrgrydeAea 23
                l++ g++++A+ 
  CDO73147.1 21 LHSKGNHAAARS 32
                666677777764 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
      TPR_10  5 lnNLanalrqrgrydeAealleeala 30
                + N a+a+ ++++y +A +++++a++
  CDO73147.1 48 YANRAAAYIAQRQYLDAAKDAQRAVE 73
                7899********************98 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 7.7
      TPR_10  26 eealairrrllG 37 
                 + ++++++++l+
  CDO73147.1  96 QPSIDAWKKALE 107
                 557899999997 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.1
      TPR_10  13 rqrgrydeAealleealairrrl 35 
                  q g+  eAe++l  a   ++++
  CDO73147.1 425 KQAGDKVEAENMLAAASKFYKKA 447
                 5789999******9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1314  (0.0732891); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3614.96
//
Query:       CDO73148.1  [L=612]
Description: hypothetical protein BN946_scf185007.g203 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4502.49
//
Query:       CDO73149.1  [L=238]
Description: hypothetical protein BN946_scf185007.g204 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1863.01
//
Query:       CDO73150.1  [L=1139]
Description: hypothetical protein BN946_scf185007.g205 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-05   23.5   0.0    7.9e-05   21.9   0.0    1.7  2  MMM1      Maintenance of mitochondrial morphology protein 1
  ------ inclusion threshold ------
      0.014   15.9   0.0       0.13   12.8   0.0    2.5  1  PH        PH domain


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   8.8e-09   7.9e-05     105     208 ..     299     399 ..     291     430 .. 0.78
   2 ?   -3.0   0.0      0.31   2.8e+03     294     318 ..     459     483 ..     425     485 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.8e-09
                 -HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHGGCS-TTEEEEEEEEEE--S---EEEEEEE.EE-TTTTSS-EEEEEEEEEE..EEEEEEEEEEEE CS
        MMM1 105 LDWfnvLiaqtiaqfreealekdnilksLnealnseelpdyldkikvteidlGedfPifsncriikeskesekkrLeakidvdls..DtltlgietkLl 201
                 + W n L+ ++   + ++ + ++ i+  L + +++ ++p +l +i v e+++G+  P +s   + ke +++     +a ++v l+   ++ +++e++  
  CDO73150.1 299 MRWLNALLGRIFFSYYKTHTLESYIIGRLMKKISRVKRPGFLTDIVVREVSVGNRTPTLSKPML-KELTKEG----DASLEVHLAykGEVRVTVEATAT 392
                 56***********************************************************999.5444434....55555555544677777888777 PP

                 ESSSSSS CS
        MMM1 202 lnyPkpl 208
                 +n   ++
  CDO73150.1 393 INLGARF 399
                 7776544 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHBTT-EEEE CS
        MMM1 294 iaslvearlkkWfeercvePrfqvv 318
                 i s +e+++k+ ++e +v P +  +
  CDO73150.1 459 ILSSIESKVKEVIQESVVMPNMDDI 483
                 67789*************9998766 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05      0.13       5     103 ..     104     261 ..      78     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                 EEEEEETSSSSC.SEEEEEEEEETTE.EEEESSTTCTTESSEEEEEESTTEEEEEEEC....TTSSSSTSEEEE......................... CS
          PH   5 GwLlkkgsgkkk.swkkrwfvLkdse.llyykndksekdkepkgsislsncevvevva....tedpkrkfcfel......................... 72 
                 G+L  +++++k  + k++w+v  +++ l++y+++   +  e    i+ls+++vv +++     e + +++ ++l                         
  CDO73150.1 104 GFLDARSKDPKRsRPKDMWYVALKGKvLYLYEDE---SMTECEAAIELSGHDVVIYPEglpdGELFAKRNAICLkpkvsateqelpsvtremkleqenv 199
                 5555444444446889988886655549999999...9999999************9999975577777777777777777888888888888888888 PP

                 ..........................EESTSSS.....TEEEEEEESSHHHHHHHHHHHHHH CS
          PH  73 ..........................riverng.....srtyllqasseeerkeWikaiqsa 103
                                           +  e ++     s+ +++ + s+ e+++W+ a+ +a
  CDO73150.1 200 delleekggsprqkqrereklvelekKKEEAREqamdvSTPWFIFVRSAVEMEDWYLALVHA 261
                 88899999999999999998888886333333344444599999999999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 7891.03
//
Query:       CDO73151.1  [L=1154]
Description: hypothetical protein BN946_scf185007.g206 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 7489.80
//
Query:       CDO73152.1  [L=889]
Description: hypothetical protein BN946_scf185007.g207 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-05   23.2  17.4    4.4e-05   23.2  17.4    5.6  6  DUF4795         Domain of unknown function (DUF4795)
     0.0018   17.2 129.1      0.011   14.6  14.5    7.3  6  Spc7            Spc7 kinetochore protein
     0.0085   16.3  23.5     0.0085   16.3  23.5    8.0  6  Tropomyosin_1   Tropomyosin like
     0.0092   16.2 166.0     0.0093   16.2  23.7    8.1  7  ATG16           Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.013   14.9 102.3       0.12   11.7  10.8    6.1  7  DUF4407         Domain of unknown function (DUF4407)
      0.018   15.7   1.3      0.018   15.7   1.3   11.6 11  SlyX            SlyX
      0.031   14.9   2.0      0.031   14.9   2.0   10.1 10  YabA            Initiation control protein YabA
       0.13   10.9  87.7       0.16   10.6  16.3    4.7  5  AAA_13          AAA domain
        0.4    9.7 107.4       0.13   11.3  18.6    5.9  5  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.51   10.2   0.0       0.51   10.2   0.0    7.3  7  PKcGMP_CC       Coiled-coil N-terminus of cGMP-dependent prot
        2.1    7.7 129.7      0.096   12.0  45.4    8.0  8  Tropomyosin     Tropomyosin
        2.2    8.7 117.8       0.06   13.8  14.8    6.2  4  Fez1            Fez1
        2.6    8.1 136.9        2.1    8.3  18.4    8.5  8  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
        2.9    6.0  89.2     0.0099   14.1  25.1    4.2  1  EzrA            Septation ring formation regulator, EzrA
        5.7    6.5   9.5        5.7    6.5   0.5    3.6  3  KNOX2           KNOX2 domain


Domain annotation for each model (and alignments):
>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   1.4e+03      14      42 ..      74     102 ..      62     112 .. 0.60
   2 ?   -1.7  20.5       1.6   1.9e+03      14     149 ..     129     271 ..     108     279 .. 0.55
   3 ?    0.1  13.3      0.43   5.2e+02       9     112 ..     198     307 ..     185     307 .. 0.85
   4 ?   -4.1  34.5       8.6     1e+04       6     169 ..     268     483 ..     263     487 .. 0.73
   5 !   23.2  17.4   3.6e-08   4.4e-05       9     172 ..     494     662 ..     484     666 .. 0.82
   6 ?   -0.4   1.9      0.61   7.3e+02       9      57 ..     701     735 ..     682     745 .. 0.45

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
     DUF4795  14 eaieklqeelekleekvkelekrledkek 42 
                  +ie l+ e+ +l+e+ ++l++ ++ k  
  CDO73152.1  74 RTIEALESEKTSLSERLHDLSQLESSKAP 102
                 45666666666666666666665555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
     DUF4795  14 eaieklqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaekadkeaLatkvsrdq...fDea..kkeLekmleellekleeq 107
                  + e       +le++v+e+ +  e+++ +++  ++ i +le +ka      ++ + +    aL++k+ +++    De+  +++L+  +++l  ++ e 
  CDO73152.1 129 TKTE-------NLEKTVREVREHAEQLSHETQKQRETIAALEAEKAT-----LAKSTAQRYAALEQKAKESEkvlADERtnASALRDRIHSLQLSVREY 215
                 3444.......455555555555566666666666666666555554.....22222223334444444444444444411678999999999999999 PP

     DUF4795 108 eealkkaldtLqeelkekld...........rlelepLkeqle...erlkelqkel 149
                 ee++++  +t++  + ek             +  l+ + eqle   ++   lq++l
  CDO73152.1 216 EERVEQQQQTISLLVSEKASlsssverlesaESALKGIEEQLEkerSKAATLQERL 271
                 99999999999955555544422211222555555666666654333333344333 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.43
     DUF4795   9 lkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvk.adkeeveeelaekadkeaLatkvsrdq.....fDeakkeLekmleell 101
                  + l++ i  lq ++ + ee+v++ +++++ + ++  +l +++e+le++  a k   e+ ++e +   +L+   s+ +      ++ +++L+   +el 
  CDO73152.1 198 ASALRDRIHSLQLSVREYEERVEQQQQTISLLVSEKASLSSSVERLESAEsALKGIEEQLEKERSKAATLQERLSHLEadahvSQAQIAQLSATERELT 296
                 6778999****************************************99845566666667999************99777777777888888889999 PP

     DUF4795 102 ekleeqeealk 112
                 +k+  qe++++
  CDO73152.1 297 DKSRDQEREIQ 307
                 99999998875 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 8.6
     DUF4795   6 aellkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvkad..keeveeelaekadk..eaLatkvsrdq.....fDeakkeLek 95 
                 +e l++l+++    q+++++l+ + +el ++++d+e++++ l   ++el+++ ++  + + e+e+++ +d   e L+ +  ++q     +++ +++L++
  CDO73152.1 268 QERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEEhlRRVHELEEQIESDDraERLEETLKNTQdradeLEFQLSKLRQ 366
                 45689999999999***********************************998855337899999999**962244666665555666699999999999 PP

     DUF4795  96 ml.......eellekle...............................eqeealkkaldtLqeelkekld.....rlelepLkeqle...erlkelqke 148
                          e + e l+                               ++ ++l +  +tLq e++   +     ++ l  L+++l    +++k++q e
  CDO73152.1 367 AYadlqgerETIAEELHrktqaetewqarhaeaekqhsmtqmqlssviAERDSLAQERSTLQAEVDDGRNlvaelQQKLAALSSELSlntRQMKQMQAE 465
                 996666666444444447777888888886655555555555555555555555666666666666666677777777888888887999999999999 PP

     DUF4795 149 lqeamekedkedeaaglrkkL 169
                 l+ a+     +++a+ ++k+L
  CDO73152.1 466 LRTATTR---AEDAEKTQKEL 483
                 9955444...46799999988 PP

  == domain 5  score: 23.2 bits;  conditional E-value: 3.6e-08
     DUF4795   9 lkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvk....adkeeveeelaekadkeaLatkvsrdqfDeakkeLekmleellek 103
                 l++++ +i++l + +  l+ekv +le++++ ++  +  l+ +ieel+ +k    +d++ ++ +l   a ++aL++    +++++a +eL+  l  ++++
  CDO73152.1 494 LEEMRPKIVELTDAKLALSEKVDSLETTIQSRDAVIAQLRTSIEELRREKesveGDRDRLQAAL--DAERSALEKDS--TELQQAYSELQTELARARKS 588
                 7889999*******************************************66555555554444..47778887766..99************999888 PP

     DUF4795 104 leeqeealkkaldtLq....eelkekld.....rlelepLkeqleerlkelqkelqeamekedkedeaaglrkkLler 172
                 ++  e++ +k+  +L+    ee+    d       +l++L+ +l er+++l  e qe +e    ++e++ lr +L+++
  CDO73152.1 589 VQDLEDERDKL-RQLSnsnvEEIRRLTDsvhtqSSQLSSLRGELGERIQALT-EAQEFLESA--QTEMESLRAELVQK 662
                 77555554443.333334459*********9*99******************.557677776..578******99875 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.61
     DUF4795   9 lkklqeaieklqeelekleekvkelekrledkekklealkkqieelekv 57 
                 l++ q+              +v+ le+ l + e ++ +l+ qi  le++
  CDO73152.1 701 LSEAQS--------------QVRALEDALFKSEAQVHTLQRQIAMLEDE 735
                 233334..............44444444444444444444444444432 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  19.7     0.014        17     161     256 ..     130     225 ..     116     228 .. 0.93
   2 !    6.5  19.2    0.0027       3.2     151     255 ..     229     339 ..     223     343 .. 0.59
   3 ?    3.0  25.7     0.032        38     144     267 ..     343     482 ..     340     498 .. 0.63
   4 !    5.6  11.7    0.0053       6.3     148     251 ..     459     558 ..     458     562 .. 0.75
   5 !    9.4   8.1   0.00035      0.42     140     213 ..     553     622 ..     550     625 .. 0.68
   6 !   14.6  14.5   9.5e-06     0.011     137     246 ..     624     739 ..     620     744 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.014
        Spc7 161 qeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 + e+l++ + e++e+ ++l++e +k++e  + le+ + +  +++ ++ a+l+++ +e +k la+ +++  +l+++i +l+ + +e+ee++++++++
  CDO73152.1 130 KTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALEQKAKESEKVLADERTNASALRDRIHSLQLSVREYEERVEQQQQT 225
                 678999*****************************99999999************************************************99986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0027
        Spc7 151 leedkelLekqeeeldellpeleeekaeleeelek...lqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqk 243
                 l ++k+ L+++ e l+++  +l+  +++le+e  k   lqe+   le+   + ++++++l  + +el  + + +++e++ l+ ++ el+++ ee   + 
  CDO73152.1 229 LVSEKASLSSSVERLESAESALKGIEEQLEKERSKaatLQERLSHLEAdahVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEEHLRRV 327
                 555555555555555555555555555555443330003333333333333566666777666667777777777888888888888888888888888 PP

        Spc7 244 seleeeiaeaer 255
                 +elee+i++ +r
  CDO73152.1 328 HELEEQIESDDR 339
                 888888887665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.032
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.............aaeeles.......idkeeLeelreelaelkaeieekkkel 222
                 lee+l++ ++ +++Le q ++l +++ +l+ e++++ eel++  +             +++++++        ++++L++ r   ++l+ae++  ++ +
  CDO73152.1 343 LEETLKNTQDRADELEFQLSKLRQAYADLQGERETIAEELHRKTQaetewqarhaeaeKQHSMTQmqlssviAERDSLAQER---STLQAEVDDGRNLV 438
                 6666666666666666666666666666666666666666666664444444333222222222222221212244444444...456778888899** PP

        Spc7 223 aelqeqleeleekieelkeqkseleeeiaeaervleeckgwsese 267
                 aelq++l++l+++++  + q++++++e++ a    e   + +++e
  CDO73152.1 439 AELQQKLAALSSELSLNTRQMKQMQAELRTATTRAED-AEKTQKE 482
                 ***************************9988766554.4444444 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0053
        Spc7 148 legleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                 +++++++ ++ + + e +++  +el++e   l++ le+++ +  el++   ++L +l e++++l+++i+++ + +a+l++ +eel+ + e+++  +++l
  CDO73152.1 459 MKQMQAELRTATTRAEDAEKTQKELQAEGVGLMRSLEEMRPKIVELTD---AKL-ALSEKVDSLETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRL 553
                 6789999999999****************************8888666...444.35666666666666666666666666666666666666666666 PP

        Spc7 247 eeeia 251
                 ++++ 
  CDO73152.1 554 QAALD 558
                 66655 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.00035
        Spc7 140 LkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelka 213
                 L+  l+ + ++le+d+++L++  +el++ l + ++  ++le+e +kl++    l++++ ee++ l +++ ++++
  CDO73152.1 553 LQAALDAERSALEKDSTELQQAYSELQTELARARKSVQDLEDERDKLRQ----LSNSNVEEIRRLTDSVHTQSS 622
                 6667777777777777777777777777777777777777777777777....666677777776666666655 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 9.5e-06
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe..aaeelesidkeeLeelre....elaelkaeieekkkelaelqeql 229
                 l++L+ +l e++++l+e +e Le+ + e+++l  el+++ +el +  e+  +   ++  +s+d+e L++l++    el+e++++++++++ l + ++q+
  CDO73152.1 624 LSSLRGELGERIQALTEAQEFLESAQTEMESLRAELVQKDEELDRLREDVSNpsSRAGTQSLDEEMLNALKQqhalELSEAQSQVRALEDALFKSEAQV 722
                 7889999*********************************99999999999877777789999*******98333347777777777777777777777 PP

        Spc7 230 eeleekieelkeqksel 246
                  +l+ +i+ l+++ ++l
  CDO73152.1 723 HTLQRQIAMLEDELAHL 739
                 77777777777766665 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  23.5   7.1e-06    0.0085       7     137 ..     196     326 ..     193     331 .. 0.94
   2 ?    5.8  26.5     0.012        14       8     142 ..     277     407 ..     276     409 .. 0.89
   3 ?    3.2  14.0     0.075        89      57     137 ..     413     500 ..     393     505 .. 0.75
   4 ?   -2.5  18.1       4.3   5.1e+03      18     121 ..     510     618 ..     494     638 .. 0.55
   5 ?   -2.5  13.1       4.4   5.3e+03       4      94 ..     577     671 ..     575     690 .. 0.76
   6 !   12.0   1.9   0.00015      0.18      14      55 ..     699     740 ..     688     743 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.1e-06
  Tropomyosin_1   7 leaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettek 102
                    ++a +  ++ + l+ +v+e+e++ +++ q i+ L      l + ve+le++ +  k   e+ ek+++++ +l+ ++  LE ++  s++++++    
     CDO73152.1 196 TNASALRDRIHSLQLSVREYEERVEQQQQTISLLVSEKASLSSSVERLESAESALKGIEEQLEKERSKAATLQERLSHLEADAHVSQAQIAQLSAT 291
                    566777899*************************************************************************************** PP

  Tropomyosin_1 103 LretdvkaeelERkvkaLeqerdewekkyeeleek 137
                     re   k+ + ER+++ L+ + +e  ++ ee  ++
     CDO73152.1 292 ERELTDKSRDQEREIQLLNGRVHELQTQSEEHLRR 326
                    ************************99999987665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.012
  Tropomyosin_1   8 eaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekL 103
                    +a  +q++  +l +  +el +++ ++e ei+ L+ ++++l+ + e+   +++e +e+ e+ ++++   e+l +  q   +ele   +kL+++   L
     CDO73152.1 277 DAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEEHLRRVHELEEQIESDDRAERLEETL-KNTQDRADELEFQLSKLRQAYADL 371
                    5667889999************************************************9998888887777.677888999*************** PP

  Tropomyosin_1 104 r.etdvkaeelERkvkaLeqerdewekkyeeleekykeak 142
                    + e +  aeel Rk++a    + ew  ++ e+e++++ ++
     CDO73152.1 372 QgERETIAEELHRKTQA----ETEWQARHAEAEKQHSMTQ 407
                    868999********986....6789999999999987665 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.075
  Tropomyosin_1  57 klkeakekaeesekkktnne.......altrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewekkyeeleek 137
                     + e  + a+e ++++++ +       +l++k+  L  el  + +++k+    Lr +  +ae+ E+  k+L++e     + +ee+  k
     CDO73152.1 413 VIAERDSLAQERSTLQAEVDdgrnlvaELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEKTQKELQAEGVGLMRSLEEMRPK 500
                    33344444455555555555788778899******************************************99988888888887766 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.3
  Tropomyosin_1  18 eleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekk.ktnnealtrkiqlLEeeleesdkk...LkettekLretd.v 108
                    +l ekv +le + ++++  i++L + +++l  e e +e +    +++++++ ++ ++++ +l++    L  el ++ k+   L++  +kLr+ +  
     CDO73152.1 510 ALSEKVDSLETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSAlEKDSTELQQAYSELQTELARARKSvqdLEDERDKLRQLSnS 605
                    455556666666666666666666666666666666666555555555443332033333566666666666666554411144455666664314 PP

  Tropomyosin_1 109 kaeelERkvkaLe 121
                    + ee+ R + ++ 
     CDO73152.1 606 NVEEIRRLTDSVH 618
                    5555555555555 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 4.4
  Tropomyosin_1   4 sLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaees....ekkktnnealtrkiqlLEeeleesdk 94 
                    +L++e   a + +++le++  +l q + ++ +ei+ Lt  +++  +++  l  +l e  +++ e+    e+++t+ e+l   + +  eel++  +
     CDO73152.1 577 ELQTELARARKSVQDLEDERDKLRQLSNSNVEEIRRLTDSVHTQSSQLSSLRGELGERIQALTEAqeflESAQTEMESLRAELVQKDEELDRLRE 671
                    57888888888999999999999999999999999999999999999988887777766655554111156777777888777777888887555 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.00015
  Tropomyosin_1  14 ekaeeleekvKeleqenlekeqeiksLtkknqqleeevekle 55 
                       +e++++v++le+   + e +++ L++++ +le+e+ +l 
     CDO73152.1 699 LELSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHLR 740
                    4567999******************************98775 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.9     0.024        29     112     146 ..      63      97 ..      56     107 .. 0.85
   2 !    8.2  25.2    0.0022       2.7      84     179 ..     118     224 ..      97     232 .. 0.86
   3 !   10.0  24.1   0.00061      0.73      74     181 ..     380     487 ..     372     493 .. 0.93
   4 !    7.8   3.6     0.003       3.5     116     179 ..     492     555 ..     488     556 .. 0.88
   5 !   16.2  23.7   7.8e-06    0.0093      70     180 ..     562     672 ..     549     675 .. 0.88
   6 !    6.7   7.5    0.0063       7.5      84     142 ..     683     739 ..     670     745 .. 0.42
   7 ?   -2.9   0.5       5.7   6.8e+03      74      94 ..     803     823 ..     762     845 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.024
       ATG16 112 qkleeklkedeerlaeleaeraaletklkdreeel 146
                 ++l +  +e+++++++le+e+++l+++l d+ +  
  CDO73152.1  63 EDLHALVREQRRTIEALESEKTSLSERLHDLSQLE 97 
                 677888999*******************9998765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0022
       ATG16  84 aqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq...........dlqDElsaLqlqlnqaE 171
                 + ++e l++ + + + l++ ++e+ e  ++l  ++++++e++a+leae+a+l +  ++r ++l++k+k  +           +l+D + +Lql +   E
  CDO73152.1 118 HHTQELLQAEHTKTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALEQKAKESEkvladertnasALRDRIHSLQLSVREYE 216
                 55566666666667778999999*******************************9999999999999999999999***999***************** PP

       ATG16 172 eklrklek 179
                 e+ ++ ++
  CDO73152.1 217 ERVEQQQQ 224
                 **998876 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00061
       ATG16  74 akiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEe 172
                 ++++  +q+ +++++  ae+ k+++ ++ +l ++ +e + l ++ ++ ++++++ ++ +a+l++kl+ +  el   ++ ++++q El + + +++ aE+
  CDO73152.1 380 EELHRKTQAETEWQARHAEAEKQHSMTQMQLSSVIAERDSLAQERSTLQAEVDDGRNLVAELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEK 478
                 5566778888999************************************************************************************** PP

       ATG16 173 klrklekEN 181
                 + ++l++E 
  CDO73152.1 479 TQKELQAEG 487
                 *******97 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.003
       ATG16 116 eklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklek 179
                 ++l+e++ ++ el++ + al++k++++e +++ +++++ +l+  ++ L+ + +++E  +++l++
  CDO73152.1 492 RSLEEMRPKIVELTDAKLALSEKVDSLETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRLQA 555
                 5678888899999999999999999999999999999999999999999999999999999985 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 7.8e-06
       ATG16  70 skqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqln 168
                 s+ ++++++l+q+ ++l++ela + ks ++l++   +l +      e++++ + +++  +++ ++l+ +l +r ++l e ++ ++  q E+++L+ +l 
  CDO73152.1 562 SALEKDSTELQQAYSELQTELARARKSVQDLEDERDKLRQLSNSNVEEIRRLTDSVHTQSSQLSSLRGELGERIQALTEAQEFLESAQTEMESLRAELV 660
                 345677899999999999999999999999999999999999999999999999999999999999999999*************************** PP

       ATG16 169 qaEeklrklekE 180
                 q +e+l++l+++
  CDO73152.1 661 QKDEELDRLRED 672
                 *********998 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0063
       ATG16  84 aqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdr 142
                 ++l ee+ +++k++  +a  l e+++++++le+ l + e++++ l++++a le++l+ +
  CDO73152.1 683 QSLDEEMLNALKQQ--HALELSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHL 739
                 34444444444332..3333444444444444444444444444444444444444332 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 5.7
       ATG16  74 akiqsleqklaqlreelaely 94 
                 ++  sl+ + a++ +ela++ 
  CDO73152.1 803 KRKVSLSMLKARIDSELAAST 823
                 344444444444444444433 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  10.8   9.7e-05      0.12     129     237 ..      63     184 ..      53     192 .. 0.73
   2 ?    7.5  14.4     0.002       2.4     118     233 ..     181     306 ..     178     318 .. 0.84
   3 ?   -1.1  28.5      0.78   9.3e+02     114     250 ..     321     497 ..     312     499 .. 0.57
   4 ?    5.6  13.2    0.0071       8.4     122     236 ..     440     560 ..     433     563 .. 0.58
   5 ?    9.8  18.4   0.00038      0.45     121     252 ..     516     640 ..     504     679 .. 0.59
   6 ?    2.9   7.9     0.048        57     135     233 ..     645     743 ..     636     752 .. 0.54
   7 ?    5.0   2.4     0.011        13     107     162 ..     688     742 ..     677     827 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.7e-05
     DUF4407 129 aaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld...............atarl 212
                 ++l a ++e ++ i+al++e +++++rl +l +   +++     tg  +v   gp++++ ++ l+a  ++ ++l+++++               +++++
  CDO73152.1  63 EDLHALVREQRRTIEALESEKTSLSERLHDLSQLESSKAPH--ITGDDAVLNCGPEFHHTQELLQAEHTKTENLEKTVRevrehaeqlshetqkQRETI 159
                 45777889999********************9999988776..88999***********9999999999999999996666666666444444444444 PP

     DUF4407 213 aalraelaeleaerakeraasqaaa 237
                 aal+ae+a+l++ +a++ aa +++a
  CDO73152.1 160 AALEAEKATLAKSTAQRYAALEQKA 184
                 4444444444444444444444443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.002
     DUF4407 118 eeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.........gtgttgvaGkgpaakekkaqldaaqaelaelkakld 207
                 e++++ +e++ a+ ++  ++l+++i +lq  +++ e+r+++++++    ++ +           + +++ +G ++  ++ +++++++q++l  l+a+  
  CDO73152.1 181 EQKAKESEKVLADERTNASALRDRIHSLQLSVREYEERVEQQQQTISLLVSEKAslsssverlESAESALKGIEEQLEKERSKAATLQERLSHLEADAH 279
                 44455556666778899999**************************99999888999999999777788999999999999999999999999999977 PP

     DUF4407 208 .atarlaalraelaeleaerakeraas 233
                  ++a++a+l a+  el+++ ++++++ 
  CDO73152.1 280 vSQAQIAQLSATERELTDKSRDQEREI 306
                 999999999999999999988887765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.78
     DUF4407 114 eeqqeeakelkeqlaaa............ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake............. 187
                 ee+ +++ el+eq++++             +++ +ele q+++l+++++ ++ ++++  +e+ ++++    ++t+  + + ++a++             
  CDO73152.1 321 EEHLRRVHELEEQIESDdraerleetlknTQDRADELEFQLSKLRQAYADLQGERETIAEELHRKTQ----AETEW-QARHAEAEKqhsmtqmqlssvi 414
                 5566666666666666666666444444433333333333333333333333333333333333332....22222.2222222222444445555555 PP

     DUF4407 188 ............kkaqldaaqaelaelkakld........atarlaalraelaeleaerakeraasqaaaaaddGllarleal 250
                              +a+ d+ ++ +ael++kl         +t ++++ +ael +++++++++++++++ +a+  Gl+  le +
  CDO73152.1 415 aerdslaqerstLQAEVDDGRNLVAELQQKLAalsselslNTRQMKQMQAELRTATTRAEDAEKTQKELQAEGVGLMRSLEEM 497
                 545555555777555555555555555555557777777*****************************9**999999887765 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0071
     DUF4407 122 elkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld............a 208
                 el+++la al++el+ +++q +++qae+++a +r+++++++ qkel+ + g g    ++  ++++ k  +l++a+ +l e  ++l+             
  CDO73152.1 440 ELQQKLA-ALSSELSLNTRQMKQMQAELRTATTRAEDAEKT-QKELQAE-GVG---LMRSLEEMRPKIVELTDAKLALSEKVDSLEttiqsrdaviaqL 532
                 4444444.588899999999999999999999988887765.4466642.333...5555555555444444444444443333112222544555556 PP

     DUF4407 209 tarlaalraelaeleaerakeraasqaa 236
                 ++ +++lr+e++++e +r++ +aa +a+
  CDO73152.1 533 RTSIEELRREKESVEGDRDRLQAALDAE 560
                 6667777777777777777777766665 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00038
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrael 219
                 ++l+++++ + +a +a+l++ i++l++e ++ e ++d+l+a++++e +   ++ t       +a+ e +++l++a++ +++l+++  +++ ++  +++ 
  CDO73152.1 516 DSLETTIQ-SRDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDST----ELQQAYSELQTELARARKSVQDLEDE--RDKLRQLSNSNV 607
                 44444444.3556777777777777777777777777777777777664333222....24566777777777777777777777..444444444444 PP

     DUF4407 220 aeleaerakeraasqaaaaaddGllarlealdr 252
                 +e+++ +++ +++s + ++    l++r++al +
  CDO73152.1 608 EEIRRLTDSVHTQSSQLSSLRGELGERIQALTE 640
                 444444444444444444444445555555543 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.048
     DUF4407 135 laeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake..kkaqldaaqaelaelkakld........atarlaalraelaele 223
                 l+ ++++ ++l+ae+ +++++ld+lr+++ +  + + gt+      +  +a +     +l +aq ++       +        ++a++ +l++++a le
  CDO73152.1 645 LESAQTEMESLRAELVQKDEELDRLREDVSNPSSRA-GTQ--SLDEEMLNALKqqHALELSEAQSQV-------RaledalfkSEAQVHTLQRQIAMLE 733
                 444555566666666666666666666666554432.222..2222211111111222333444444.......2444444478999999999999999 PP

     DUF4407 224 aerakeraas 233
                 +e+a+ r+a+
  CDO73152.1 734 DELAHLRTAH 743
                 9988877765 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.011
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalrae 162
                 e    l+++++ e +e+++q++ al++ l + eaq+  lq++i+ +e++l+ lr++
  CDO73152.1 688 EMLNALKQQHALELSEAQSQVR-ALEDALFKSEAQVHTLQRQIAMLEDELAHLRTA 742
                 4455666777777777777777.466666666666666666666666666666554 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00042       0.5      20      55 ..      63      98 ..      62     108 .. 0.88
   2 ?    1.8   6.2      0.31   3.7e+02       6      55 ..     132     181 ..     128     195 .. 0.75
   3 ?    3.4   2.7       0.1   1.2e+02      13      55 ..     213     248 ..     196     262 .. 0.50
   4 ?    9.9   7.6   0.00097       1.2       1      56 [.     267     322 ..     267     325 .. 0.95
   5 ?    6.2   7.4     0.013        16       4      55 ..     326     376 ..     323     389 .. 0.87
   6 ?    5.7   6.9      0.02        23      12      58 ..     438     484 ..     426     499 .. 0.76
   7 ?    5.3   1.8     0.026        31      10      54 ..     513     557 ..     508     567 .. 0.69
   8 ?    3.8   4.4     0.074        88      15      51 ..     564     600 ..     555     611 .. 0.59
   9 ?    2.8   0.9      0.15   1.8e+02      19      58 ..     610     649 ..     606     653 .. 0.84
  10 ?    2.3   3.1      0.23   2.7e+02      12      46 ..     645     679 ..     631     698 .. 0.68
  11 ?   15.7   1.3   1.5e-05     0.018      12      58 ..     701     747 ..     698     757 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00042
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 20 eeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55
                e+L + v eq+++i++l+ +   l erl +l++ ++
  CDO73152.1 63 EDLHALVREQRRTIEALESEKTSLSERLHDLSQLES 98
                78999***********************99998755 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   6 eeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 e+LE  +    +  e+L+ +  +q+++i++l+++ + la+  +++ ++ +
  CDO73152.1 132 ENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALE 181
                 78888888899999999999999999999999999999887744444433 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  13 afqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                            + v +qqq+i+ l  + + l   ++ le++++
  CDO73152.1 213 REY-------EERVEQQQQTISLLVSEKASLSSSVERLESAES 248
                 333.......333444455555555554444444444444443 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00097
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX   1 leerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessga 56 
                 l+erl +LE      + +i +L+++  e  ++   ++r+++ll+ r+ el+++s++
  CDO73152.1 267 LQERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEE 322
                 689*************************************************9874 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 r+ eLE+++   +d  e+L +++ + q++ d+l+ ql +l++  ++l+ + +
  CDO73152.1 326 RVHELEEQIE-SDDRAERLEETLKNTQDRADELEFQLSKLRQAYADLQGERE 376
                 8999999986.67788****************************99998755 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX  12 lafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58 
                 +a +++ + +L+ ++    +q++++q++lr  + r +++e+++++ +
  CDO73152.1 438 VAELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEKTQKELQ 484
                 56677777888888888888888888888888888877777766554 PP

  == domain 7  score: 5.3 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX  10 iklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54 
                 +k+  +e ti++ ++v+a+ +  i++l+r+ + ++     l+++ 
  CDO73152.1 513 EKVDSLETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRLQAAL 557
                 566677888888888888888888888888777766665555554 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.074
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
        SlyX  15 qedtieeLndvvaeqqqqidrlqrqlrllaerlkele 51 
                 +e+   eL+++  e q +++r ++ ++ l+++  +l+
  CDO73152.1 564 LEKDSTELQQAYSELQTELARARKSVQDLEDERDKLR 600
                 4555556666666666666666666666665544444 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX  19 ieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58 
                 i +L d v  q  q++ l+ +l +  + l e++e  ++++
  CDO73152.1 610 IRRLTDSVHTQSSQLSSLRGELGERIQALTEAQEFLESAQ 649
                 889999*************999999999998888877665 PP

  == domain 10  score: 2.3 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        SlyX  12 lafqedtieeLndvvaeqqqqidrlqrqlrllaer 46 
                 l   +  +e+L +++++ ++++drl++ +     r
  CDO73152.1 645 LESAQTEMESLRAELVQKDEELDRLREDVSNPSSR 679
                 33344567889999999999999999988765555 PP

  == domain 11  score: 15.7 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX  12 lafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58 
                 l+  + ++ +L d++++ + q+  lqrq+++l+++l++l++++++  
  CDO73152.1 701 LSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHLRTAHPRPS 747
                 566788999*****************************999988544 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       4.2   5.1e+03      37      55 ..      75      93 ..      61     107 .. 0.46
   2 ?    7.3   5.3    0.0062       7.4      13      75 ..     120     182 ..     113     195 .. 0.71
   3 ?    3.4   4.3     0.097   1.2e+02       4      69 ..     199     270 ..     196     275 .. 0.74
   4 ?    1.9   5.2      0.29   3.4e+02       5      71 ..     266     332 ..     262     339 .. 0.81
   5 ?    4.2   8.0     0.057        68       8      68 ..     338     398 ..     324     416 .. 0.68
   6 ?   -1.6   8.5       3.7   4.4e+03      21      53 ..     407     460 ..     391     496 .. 0.45
   7 ?   14.9   2.0   2.6e-05     0.031       5      74 ..     510     579 ..     505     580 .. 0.94
   8 ?    7.4   2.9    0.0055       6.6      12      74 ..     563     625 ..     559     630 .. 0.76
   9 ?    2.3   4.1      0.22   2.6e+02       5      63 ..     612     670 ..     608     700 .. 0.66
  10 ?    3.8   0.3     0.077        92       5      43 ..     703     741 ..     698     745 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.2
                HHHHHHHHHHHHHHHHXXX CS
        YabA 37 enaeLeleneklrerleee 55
                  ++Le e+++l erl++ 
  CDO73152.1 75 TIEALESEKTSLSERLHDL 93
                2233444444444444222 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  13 leeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLar 75 
                  +e l++ +++ e+l++++ e+ e+ ++L+ e +k re+++  e+++++  k++ + +  L++
  CDO73152.1 120 TQELLQAEHTKTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALEQ 182
                 566677778888888888888888888888888888888866666666666666665555554 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.097
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......XXXXXXXXXXXXXXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerl......eeeekkekekkkelseg 69 
                 + l d++++l+ +++e  e++e+ +++++ l+ e a+L+   e+l +        ee+ +ke++k ++l+e 
  CDO73152.1 199 SALRDRIHSLQLSVREYEERVEQQQQTISLLVSEKASLSSSVERLESAEsalkgiEEQLEKERSKAATLQER 270
                 56789999999999************************9999999887755555544444444444444444 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegke 71 
                  l ++l++le + +  ++++++l ++  el+++ ++ e e + l  r++e +++++e+ ++++e +e
  CDO73152.1 266 TLQERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEEHLRRVHELEE 332
                 57789999****************9999999999999999999999997777777666666655554 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 d+ e+lee+l++++++ +el+ +l++l +  a+L+ e e++ e+l++++++e+e +++  e
  CDO73152.1 338 DRAERLEETLKNTQDRADELEFQLSKLRQAYADLQGERETIAEELHRKTQAETEWQARHAE 398
                 5667788888888888888888888888888888888888888884444444443333333 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....................X CS
        YabA  21 leeleelkeelaelleenaeLeleneklrerl.....................e 53 
                 + +l+++ +e  +l +e ++L++e +  r+++                     +
  CDO73152.1 407 QMQLSSVIAERDSLAQERSTLQAEVDDGRNLVaelqqklaalsselslntrqmK 460
                 555555555555555555555555444444442222222222222222222111 PP

  == domain 7  score: 14.9 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLa 74 
                  l +k+++le+++++  + +++l+++++el  e +++e + ++l+  l+ e+++ +++++el++++++L+
  CDO73152.1 510 ALSEKVDSLETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDSTELQQAYSELQ 579
                 68899*******************************************99999999********999986 PP

  == domain 8  score: 7.4 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  12 eleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLa 74 
                 +le++ +el++  +el++ela+  +  ++Le e +klr++ +++ ++ ++ + ++++  ++L+
  CDO73152.1 563 ALEKDSTELQQAYSELQTELARARKSVQDLEDERDKLRQLSNSNVEEIRRLTDSVHTQSSQLS 625
                 688999999999999999999999999999999999999987666666666655555555555 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekk 63 
                  l+d++++ ++ql++l  el+e  ++l+e  e  ++ ++e e+lr +l +++++ ++ +
  CDO73152.1 612 RLTDSVHTQSSQLSSLRGELGERIQALTEAQEFLESAQTEMESLRAELVQKDEELDRLR 670
                 56677777777777777777777777777777777777888888888744444433333 PP

  == domain 10  score: 3.8 bits;  conditional E-value: 0.077
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLel 43 
                 e  +++++le+ l +  +++++l++++a l +e a+L++
  CDO73152.1 703 EAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHLRT 741
                 556789999999999999999999999999999888875 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  18.6     0.033        39     322     467 ..      64     226 ..      45     242 .. 0.58
   2 ?    4.7  32.9    0.0079       9.4     281     470 ..     117     316 ..     115     337 .. 0.67
   3 ?    4.3  17.6      0.01        12     318     481 ..     301     458 ..     296     463 .. 0.82
   4 ?    4.3  21.0     0.011        13     268     457 ..     338     547 ..     336     559 .. 0.68
   5 ?   10.6  16.3   0.00013      0.16     281     443 ..     564     740 ..     550     745 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.033
      AAA_13 322 dkeelkaeaealeeqLkglqraleaKrkepfksvelesvkaki.e.......................sikklvaeineliakhNekvanleeekeeak 396
                 d + l +e + + e+L++ +  l+++  ++++   les+ka   +                           + +++++++++  e+ ++l  e+++ +
  CDO73152.1  64 DLHALVREQRRTIEALESEKTSLSERLHDLSQ---LESSKAPHiTgddavlncgpefhhtqellqaehT---KTENLEKTVREVREHAEQLSHETQKQR 156
                 34444444445555566666666666666666...4333333213445566666666677777764444...444555555555555555555555555 PP

      AAA_13 397 kklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeL 467
                 + + + ++e+++ + +   + y++le+++++ ek l++e +++ +l+++i  L+ ++r+ ++ +e+  + +
  CDO73152.1 157 ETIAALEAEKATLA-KSTAQRYAALEQKAKESEKVLADERTNASALRDRIHSLQLSVREYEERVEQQQQTI 226
                 55555555544333.34456777888888888888888888888888888888877777777777655544 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0079
      AAA_13 281 feekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksve.....lesvkakiesikklvaei 374
                 f+  qe L+   +k e+ ++ + e  + + + ++e ++ +e ++ l+ae+ +l+++  + + ale+K ke  k +       + + ++i s++ +v e 
  CDO73152.1 117 FHHTQELLQAEHTKTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALEQKAKESEKVLAdertnASALRDRIHSLQLSVREY 215
                 556666666666666555543333333333346666667777888888888888888888888888888766654400001344455557888899999 PP

      AAA_13 375 neliakhNekvanleeekeeakkklelhlv.....eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLk 468
                 +e +++  ++++ l +ek+++ +++e+ +      + +e++l++  +k + l++ +++le+++  ++a++++l +  +eL  + rd+++ ++ +n  ++
  CDO73152.1 216 EERVEQQQQTISLLVSEKASLSSSVERLESaesalKGIEEQLEKERSKAATLQERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVH 314
                 999999999999999999999999988776555555567777777777777778888888888888888888888888888888888888887777666 PP

      AAA_13 469 af 470
                 + 
  CDO73152.1 315 EL 316
                 54 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.01
      AAA_13 318 afeedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykk 416
                   e++++ l+ +  +l++q ++  r++ +  +++ ++   e++++ +++ ++  +e++ + +k  +  a+l+ e+e+++++l +   +e   e    + 
  CDO73152.1 301 DQEREIQLLNGRVHELQTQSEEHLRRVHELEEQIESDDRAERLEETLKNTQDRADELEFQLSKLRQAYADLQGERETIAEELHRKTQAET--E---WQA 394
                 45566666777777777777777777777777777777777888888999*******************************999665544..4...445 PP

      AAA_13 417 kykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLkfee 481
                   +++ek+ + ++ +l+   ae   l++e + L++++ d ++ ++e+ ++L+a   +el+L+  +
  CDO73152.1 395 RHAEAEKQHSMTQMQLSSVIAERDSLAQERSTLQAEVDDGRNLVAELQQKLAAL-SSELSLNTRQ 458
                 668889999999999***************************************.8999998765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.011
      AAA_13 268 erkaaLeahFddefeekqerLekliekveskkselleklkavsde....asensafeedkeelkaeaealeeqLkglqraleaKrkepfk.svelesvk 361
                 +r+++Le+   ++ +   ++Le  ++k+ ++ + l+ + +++++e     +++ + +  ++e++++ + +++qL ++  + +   +e ++ ++e+++  
  CDO73152.1 338 DRAERLEETLKNTQD-RADELEFQLSKLRQAYADLQGERETIAEElhrkTQAETEWQARHAEAEKQHSMTQMQLSSVIAERDSLAQERSTlQAEVDDGR 435
                 566677776666433.34444444444444444444444444333111133333455668888888889999999876666555555565567999999 PP

      AAA_13 362 akiesikklvaeineliakhNekvanleeekeeakkklelhlv................eeleseldeykkkykklekaieklekelkeeeaelkklee 444
                 + + ++++++a++    + + ++++++++e  +a++  e  +                 ee++ ++ e+++++ +l++++ +le+ ++   a +++l+ 
  CDO73152.1 436 NLVAELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEKtqkelqaegvglmrslEEMRPKIVELTDAKLALSEKVDSLETTIQSRDAVIAQLRT 534
                 99999*********9999999999999999999999998877667777777777777777777777777777777777777777777777777777777 PP

      AAA_13 445 eikeLekqlrdek 457
                  i+eL+++ ++++
  CDO73152.1 535 SIEELRREKESVE 547
                 7777777766554 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00013
      AAA_13 281 feekqerLekliekveskkselleklkavsde.asensafeedkeelkaeaealeeq...LkglqraleaKrkepfksve.lesvkakie.......si 367
                  e++  +L+++ ++++++ +++ ++++++ de +++++ +++++ee+++ ++ + +q   L +l+ +l ++++ + +  e les++ ++e       + 
  CDO73152.1 564 LEKDSTELQQAYSELQTELARARKSVQDLEDErDKLRQLSNSNVEEIRRLTDSVHTQssqLSSLRGELGERIQALTEAQEfLESAQTEMEslraelvQK 662
                 456666777777777777777777777777762444445777788888877655544445888888888888777665554566666665111111155 PP

      AAA_13 368 kklvaeineliakhN..ekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkle 443
                  ++++++ e +++    + +++l+ee  +a k+  + +++e++s++ ++++++ k e+++  l+++++  e+el+ l+
  CDO73152.1 663 DEELDRLREDVSNPSsrAGTQSLDEEMLNALKQQHALELSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHLR 740
                 666666666665433114466666666666666666666666666666666666666666666666666666666554 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  14.9     0.021        25      28     127 ..      73     189 ..      62     214 .. 0.78
   2 ?    2.2  21.8     0.066        79      20     145 ..     215     332 ..     198     352 .. 0.84
   3 ?    8.1  18.3    0.0011       1.3      23     128 ..     360     486 ..     347     503 .. 0.76
   4 ?   11.3  18.6   0.00011      0.13      23     175 ..     493     651 ..     491     654 .. 0.61
   5 ?    4.2   7.2     0.016        19      28     128 ..     642     759 ..     636     816 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.021
       Atg14  28 rerlaklksekeslkkkiekalegke.................eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsd 109
                 r  +  l sek sl +++ ++ + ++                 e + +++ ++ +++k e+l +++++ re+ ++l++  +++++ i++  ++ a+l +
  CDO73152.1  73 RRTIEALESEKTSLSERLHDLSQLESskaphitgddavlncgpEFHHTQELLQAEHTKTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAK 171
                 445556677777777777655444445567777777888888888999999999999999999************************************ PP

       Atg14 110 klkkRrsdleslqnelee 127
                 ++++R++ le   +e e+
  CDO73152.1 172 STAQRYAALEQKAKESEK 189
                 ***999997666555554 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.066
       Atg14  20 gperlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdl 118
                  +er+++ ++ +  l sek+sl + +e++++ ++       ++k   ++le+ +s+ a l+erl+ l+++ +  +++i++ +++ ++l dk  +  +++
  CDO73152.1 215 YEERVEQQQQTISLLVSEKASLSSSVERLESAES-------ALKGIEEQLEKERSKAATLQERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREI 306
                 4688999999999999999999999998888888.......9*************************************************99999999 PP

       Atg14 119 eslqneleerrkkqiaklqdaikrieq 145
                 ++l+ +++e ++++ + l   +++ e+
  CDO73152.1 307 QLLNGRVHELQTQSEEHLR-RVHELEE 332
                 *********9988766665.3333333 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0011
       Atg14  23 rlyelrerlaklksekeslkkkiekalegke....eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk..... 112
                 +l +lr+ +a+l+ e+e++ +++ ++ + ++    +  ++e++   ++++l++  +++ +l ++ ++l++ ++  +  ++e ++kla+ls++l+     
  CDO73152.1 360 QLSKLRQAYADLQGERETIAEELHRKTQAETewqaRHAEAEKQHSMTQMQLSSVIAERDSLAQERSTLQAEVDDGRNLVAELQQKLAALSSELSlntrq 458
                 789999999999999999999999888888766666666777777778888888888889999999999999999999999999999999999988777 PP

       Atg14 113 ............kRrsdleslqneleer 128
                             +R +d+e++q+el+++
  CDO73152.1 459 mkqmqaelrtatTRAEDAEKTQKELQAE 486
                 7755555555555555555555555555 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00011
       Atg14  23 rlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.......kR 114
                 +l+e r ++  l  +k +l +k++ ++++ +   ++++ i ++++++eel+ ++++ +    +l++ l+  ++++e+ + +l++  ++l        k 
  CDO73152.1 493 SLEEMRPKIVELTDAKLALSEKVDSLETTIQ---SRDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDSTELQQAYSELQtelararKS 588
                 5666666777777777777777776666666...56666666666666666666666666666666666666666666666666666666999996633 PP

       Atg14 115 rsdleslqneleerrkkq...iaklqdaikrieqklsslssktlesrsslcselaklyglrrts 175
                  +dle  +++l++  ++    i++l+d++++++ +lssl+ ++ e r++ ++e+ +  +  +t+
  CDO73152.1 589 VQDLEDERDKLRQLSNSNveeIRRLTDSVHTQSSQLSSLRGELGE-RIQALTEAQEFLESAQTE 651
                 345666666666555555000555555555666666666666655.888888888777776655 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.016
       Atg14  28 rerlaklksekeslkkkiekalegke..................eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklakls 108
                 +e l + ++e esl+ ++ ++ e+ +                  + e l++  ++++  l+e +s+++ l++ l + ++++++l+++i+    +la+l+
  CDO73152.1 642 QEFLESAQTEMESLRAELVQKDEELDrlredvsnpssragtqslDEEMLNALKQQHALELSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHLR 740
                 555555555555555555544444443444555555555555656666888888888899999999999999999999999999999999999999888 PP

       Atg14 109 dklkkRrsdleslqneleer 128
                  +   R s+  s+++ l  r
  CDO73152.1 741 TAH-PRPSSRGSTHQPLPRR 759
                 886.5666655555555444 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       1.5   1.7e+03      10      20 ..     212     222 ..     203     229 .. 0.60
   2 ?    0.6   1.4      0.43   5.1e+02      11      28 ..     293     310 ..     293     317 .. 0.84
   3 ?   -0.8   0.6       1.2   1.4e+03       9      19 ..     326     336 ..     325     345 .. 0.85
   4 ?   -3.7   0.0       9.3   1.1e+04      11      17 ..     439     445 ..     438     446 .. 0.59
   5 ?   10.2   0.0   0.00043      0.51       8      29 ..     513     534 ..     511     541 .. 0.92
   6 ?   -0.8   1.6       1.2   1.4e+03      13      28 ..     655     670 ..     652     672 .. 0.85
   7 ?    2.3   0.1      0.13   1.6e+02      12      29 ..     724     741 ..     709     742 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
   PKcGMP_CC  10 IRELEkrlaek 20 
                 +RE E+r++++
  CDO73152.1 212 VREYEERVEQQ 222
                 35666666665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.43
   PKcGMP_CC  11 RELEkrlaekdeEIqELr 28 
                 REL ++ ++++ EIq L 
  CDO73152.1 293 RELTDKSRDQEREIQLLN 310
                 9*************9776 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.2
   PKcGMP_CC   9 RIRELEkrlae 19 
                 R+ ELE++++ 
  CDO73152.1 326 RVHELEEQIES 336
                 889*****986 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 9.3
   PKcGMP_CC  11 RELEkrl 17 
                 +EL+++l
  CDO73152.1 439 AELQQKL 445
                 4666666 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00043
   PKcGMP_CC   8 ERIRELEkrlaekdeEIqELrs 29 
                 E++  LE  ++ +d++I++Lr+
  CDO73152.1 513 EKVDSLETTIQSRDAVIAQLRT 534
                 77788****************7 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 1.2
   PKcGMP_CC  13 LEkrlaekdeEIqELr 28 
                 L + l +kdeE   Lr
  CDO73152.1 655 LRAELVQKDEELDRLR 670
                 567899*****99998 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.13
   PKcGMP_CC  12 ELEkrlaekdeEIqELrs 29 
                  L++++a  ++E + Lr+
  CDO73152.1 724 TLQRQIAMLEDELAHLRT 741
                 599***********9996 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5      0.62   7.4e+02      21      48 ..      66      93 ..      59     102 .. 0.48
   2 ?   12.0  45.4     8e-05     0.096       2     207 ..     130     335 ..     129     339 .. 0.89
   3 ?    3.5   4.1     0.033        40     190     228 ..     338     376 ..     334     387 .. 0.58
   4 ?   10.1  18.4   0.00031      0.37     101     224 ..     382     505 ..     374     513 .. 0.89
   5 ?    0.7   8.4      0.23   2.7e+02     160     235 ..     504     579 ..     489     581 .. 0.85
   6 ?   -3.4  15.1       4.1   4.9e+03      83     183 ..     518     615 ..     511     634 .. 0.51
   7 ?    3.7   4.6     0.029        35      11      61 ..     625     675 ..     617     694 .. 0.83
   8 ?    9.7   2.2   0.00041      0.49      16      53 ..     700     737 ..     687     743 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.62
  Tropomyosin 21 kkkleeaekkaekaeaEvaalnrriqll 48
                 ++ ++e+++++e  e+E ++l  r++ l
   CDO73152.1 66 HALVREQRRTIEALESEKTSLSERLHDL 93
                 4444444444444455554444444433 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 8e-05
  Tropomyosin   2 klkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleelea 99 
                  k +++e+++ e++e++e++ ++ ++++++++  eaE a+l ++  +  + le+  +++e+    L +   +a+     +  l  + ++ ee++e++++
   CDO73152.1 130 KTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALEQKAKESEK---VLADERTNASALRDRIHSLQLSVREYEERVEQQQQ 224
                  77889999***********************************99999999876666555...67777777888788889999***********9998 PP

  Tropomyosin 100 qlk...eakeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseekaseredeyeeeirtLeekLkeaeeRaee 194
                   ++     k    +  +++e ++  l+ +e++Le+ +++a +  ++ ++Le + +v ++++ +L + e + +++  + e+ei+ L+ +  e ++  ee
   CDO73152.1 225 TISllvSEKASLSSSVERLESAESALKGIEEQLEKERSKAATLQERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEE 322
                  754222344445566789999***************************************************************************** PP

  Tropomyosin 195 AErsvqkLekevd 207
                    r+v++Le++++
   CDO73152.1 323 HLRRVHELEEQIE 335
                  **********997 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.033
  Tropomyosin 190 eRaeeAErsvqkLekevdrledeleaekekykaiseeLd 228
                  +Rae  E ++++ +  +d+le +l++ ++ y +++ e +
   CDO73152.1 338 DRAERLEETLKNTQDRADELEFQLSKLRQAYADLQGERE 376
                  566666666666666666666666666666666655544 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00031
  Tropomyosin 101 lkeakeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseekaseredeyeeeirtLeekLkeaeeRaeeAErs 198
                  l+  ++ + e + + +E++++  +++ +L    +  ++  ++ + L+ e+    n + +L+ + ++ s     + ++++++++ L++a +Rae+AE++
   CDO73152.1 382 LHRKTQAETEWQARHAEAEKQHSMTQMQLSSVIAERDSLAQERSTLQAEVDDGRNLVAELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEKT 479
                  555566677888999***************99888888888889******************9999999999************************** PP

  Tropomyosin 199 vqkLekevdrledeleaekekykais 224
                   ++L++e   l  +le+ + k+ +++
   CDO73152.1 480 QKELQAEGVGLMRSLEEMRPKIVELT 505
                  *******9999999999998876665 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.23
  Tropomyosin 160 LevseekaseredeyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqtlaeLe 235
                  L  ++ + se+ d+ e +i++  + +++  +  ee  r+ + +e + drl+ +l+ae++  ++ s eL+q+  eL+
   CDO73152.1 504 LTDAKLALSEKVDSLETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDSTELQQAYSELQ 579
                  4445556789999999999999999999999999999*******************************99999997 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 4.1
  Tropomyosin  83 lEnrelkdeekleeleaqlkeakeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseekaseredeyeeeirt 180
                  lE++ ++ +  +++l ++++e ++ +e+ +   +  +  l    s Le+         +  +eL+ eL  + +++++Le + +k  +  +++ eeir 
   CDO73152.1 518 LETTIQSRDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDSTEL---QQAYSELQTELARARKSVQDLEDERDKLRQLSNSNVEEIRR 612
                  344444444444444444444444444433333333333333333333332222...22344566666666666666666666666666666666666 PP

  Tropomyosin 181 Lee 183
                  L++
   CDO73152.1 613 LTD 615
                  665 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.029
  Tropomyosin  11 deaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerlee 61 
                   + + +l +  + l ea++  e+a++E ++l+  + + +eel+r  e++ +
   CDO73152.1 625 SSLRGELGERIQALTEAQEFLESAQTEMESLRAELVQKDEELDRLREDVSN 675
                  55566677778899******************************9999876 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00041
  Tropomyosin  16 rlekakkkleeaekkaekaeaEvaalnrriqlleeele 53 
                  +l +a++++++ e++  k ea v +l+r+i  le+el 
   CDO73152.1 700 ELSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELA 737
                  678999*****************************996 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2  22.9      0.96   1.1e+03      36     154 ..      65     222 ..      58     228 .. 0.61
   2 ?    6.5  26.2    0.0083        10      14     194 ..     405     593 ..     403     598 .. 0.75
   3 ?    6.3  11.9    0.0097        12      29     113 ..     525     609 ..     509     622 .. 0.55
   4 ?   13.8  14.8     5e-05      0.06      18     150 ..     601     742 ..     600     754 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.96
        Fez1  36 lkaqlrelrakleekeeeikeleesleektle.............levcenelqrkkseaellrekvekleeelkelreelselsleeeeaa....... 114
                 l a +re r ++e+ e+e ++l+e+l++ ++              + +c  e++++++  +  + k+e+le+ ++e+re++++ls+e+++++       
  CDO73152.1  65 LHALVREQRRTIEALESEKTSLSERLHDLSQLesskaphitgddaVLNCGPEFHHTQELLQAEHTKTENLEKTVREVREHAEQLSHETQKQRetiaale 163
                 678889999999999999999999988755434888999999999667777777777777777777777777777777766666655555555555544 PP

        Fez1 115 .............lesdeakaqrqe......aeeleelkreverlraeLkeerqkkeeq 154
                              +++ e+ka+++e      ++++++l+ ++  l+ +++e +++ e+q
  CDO73152.1 164 aekatlakstaqrYAALEQKAKESEkvladeRTNASALRDRIHSLQLSVREYEERVEQQ 222
                 44434444444442222222222223333335566666666666666666666555555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0083
        Fez1  14 lLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeee 112
                 +   QL  + ae  + ++e  +l+a++ + r+ + e ++++  l+++l+  t++++++++el+ ++++ae  ++++++l++e  +l ++l+e+ ++  e
  CDO73152.1 405 MTQMQLSSVIAERDSLAQERSTLQAEVDDGRNLVAELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEKTQKELQAEGVGLMRSLEEMRPKIVE 503
                 566799999999999999999********************************************9999999999999999999998889988777666 PP

        Fez1 113 aa.........lesdeakaqrqe.aeeleelkreverlraeLkeerqkkeeqassFeqERrtWqeeKekVirYqkqLQlnYvqmyrrnqaLE 194
                  +         +  d+ ++  q+    +++l+ ++e+lr+e +  +  +++ +++ + ER   +++     +   +LQ+      +  q+LE
  CDO73152.1 504 LTdaklalsekV--DSLETTIQSrDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDSTELQQAYSELQTELARARKSVQDLE 593
                 556666666432..332222222235677788888888888888888888888888888887776666666666666666666555556665 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0097
        Fez1  29 klseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeea 113
                 +   i +l++++ elr + e+ e   ++l+++l+     le+   elq++ se ++   +++k  ++l++ r++l++ls+++ e+
  CDO73152.1 525 RDAVIAQLRTSIEELRREKESVEGDRDRLQAALDAERSALEKDSTELQQAYSELQTELARARKSVQDLEDERDKLRQLSNSNVEE 609
                 3334556777777777777777777777777777777777777777777744444444444444444444444444444333333 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 5e-05
        Fez1  18 QLkdsqaevtqklseivalk.aqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleee..lkelreelselsleeeea 113
                 QL +s  e  ++l + v+ + +ql  lr +l e+ ++++e++e le+ ++e+e + +el +k +e + lre v++ ++   +++l ee+ ++   ++++
  CDO73152.1 601 QLSNSNVEEIRRLTDSVHTQsSQLSSLRGELGERIQALTEAQEFLESAQTEMESLRAELVQKDEELDRLREDVSNPSSRagTQSLDEEMLNAL--KQQH 697
                 777777777777777776652577788888888888888888888888888888888888888888888887766554311344444444433..3333 PP

        Fez1 114 alesdeakaqrqe........aeeleelkreverlraeLkeerqk 150
                 ale +ea+ q ++        + ++++l+r+++ l+ eL++ r +
  CDO73152.1 698 ALELSEAQSQVRAledalfksEAQVHTLQRQIAMLEDELAHLRTA 742
                 344444444433356778877788899999999999999887766 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.0     0.012        14      81     113 ..      61      93 ..      57     101 .. 0.73
   2 ?    4.9  18.9      0.02        24      24     121 ..     129     223 ..     116     232 .. 0.83
   3 ?    0.2  14.9      0.58   6.9e+02       2      87 ..     181     269 ..     180     271 .. 0.86
   4 ?    6.8  18.9    0.0053       6.3      12     103 ..     240     334 ..     231     340 .. 0.83
   5 ?    5.9  15.9      0.01        12       4     106 ..     339     441 ..     336     448 .. 0.86
   6 ?    6.6  10.4    0.0062       7.4      20     105 ..     439     524 ..     434     532 .. 0.82
   7 ?    8.3  18.4    0.0018       2.1      21     128 ..     531     645 ..     525     652 .. 0.74
   8 ?   -3.0  16.6       5.5   6.6e+03      33     116 ..     638     728 ..     612     740 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
  CENP-F_leu_zip  81 ekeeLekelqkkqervseLeslnsslenlleek 113
                     e+e+L+  +++++++++ Les + sl++ l+++
      CDO73152.1  61 EREDLHALVREQRRTIEALESEKTSLSERLHDL 93 
                     778888888888888888888888887777654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.02
  CENP-F_leu_zip  24 dkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekv 118
                      k enLe+ + ++ e+ e++  e  ++++++ +l++e+ +la+++ +  + L++  +e e++   l +++   s L  +  sl+  ++e E+   
      CDO73152.1 129 TKTENLEKTVREVREHAEQLSHETQKQRETIAALEAEKATLAKSTAQRYAALEQKAKESEKV---LADERTNASALRDRIHSLQLSVREYEERVE 220
                     5889*************************************************999999988...888888888888888777777777776544 PP

  CENP-F_leu_zip 119 qmk 121
                     q +
      CDO73152.1 221 QQQ 223
                     444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.58
  CENP-F_leu_zip   2 ekkklhvlekLKeserkadsLkdkvenLe...relemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLek 87 
                     e+k ++ ++ L   + +a+ L+d++ +L+   re e+  e+q+++i    ++ka +++  e +e  ++ l+ +e +L++ rs   +L++
      CDO73152.1 181 EQKAKESEKVLADERTNASALRDRIHSLQlsvREYEERVEQQQQTISLLVSEKASLSSSVERLESAESALKGIEEQLEKERSKAATLQE 269
                     678888888899999999**********7666899999999999999999999999999999999999999999999999998888876 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0053
  CENP-F_leu_zip  12 LKeserkadsLkdkvenLerel...emseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLesln 103
                       + e+ ++ Lk+  e+Le+e     +++e +++++ +a  s+a++ +l +  +el+ + r+ e +++ l     eL+ + ++  +rv+eLe+  
      CDO73152.1 240 VERLESAESALKGIEEQLEKERskaATLQERLSHLEADAHVSQAQIAQLSATERELTDKSRDQEREIQLLNGRVHELQTQSEEHLRRVHELEEQI 334
                     5566777788888888888876111567899999999******************************************************9865 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.01
  CENP-F_leu_zip   4 kklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervse 98 
                     + ++++e LK+++ +ad L+ +  +L +   +++ ++e +  e   + ++  + ++   e +++ +  +++L+++  e+++L++e  + q +v++
      CDO73152.1 339 RAERLEETLKNTQDRADELEFQLSKLRQAYADLQGERETIAEELHRKTQAETEWQARHAEAEKQHSMTQMQLSSVIAERDSLAQERSTLQAEVDD 433
                     567899********************************999888877766667899999999999999999***********9999999999988 PP

  CENP-F_leu_zip  99 Leslnssl 106
                       +l  +l
      CDO73152.1 434 GRNLVAEL 441
                     66655555 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0062
  CENP-F_leu_zip  20 dsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnss 105
                     + L++k  +L +el    ++  ++  e  t+   +e  ++  +el++e   l   L+++r    eL+       e+v++Le++  s
      CDO73152.1 439 AELQQKLAALSSELSLNTRQMKQMQAELRTATTRAEDAEKTQKELQAEGVGLMRSLEEMRPKIVELTDAKLALSEKVDSLETTIQS 524
                     56889999999999999999999999999999999999999999999999999999999999999988888888889888887666 PP

  == domain 7  score: 8.3 bits;  conditional E-value: 0.0018
  CENP-F_leu_zip  21 sLkdkvenLerelemseenqekvileaEtskaevet....lkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlle 111
                     +L+  +e+L re+e +e +++++    + ++ ++e+    l++   el++el + +  +++l  e+++L +  + + e++  L  +  + +++l+
      CDO73152.1 531 QLRTSIEELRREKESVEGDRDRLQAALDAERSALEKdsteLQQAYSELQTELARARKSVQDLEDERDKLRQLSNSNVEEIRRLTDSVHTQSSQLS 625
                     688899********9999988765555555555554446699999999999999999999999******99989999999999999888888888 PP

  CENP-F_leu_zip 112 ekEqe...kvqmkeeskaav 128
                      +  e   ++q   e+++ +
      CDO73152.1 626 SLRGElgeRIQALTEAQEFL 645
                     77666333444444444444 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 5.5
  CENP-F_leu_zip  33 lemseenqekvileaEtskaevetlkeeieelaeelreleldLvalr.......sekeeLekelqkkqervseLeslnsslenlleekEqe 116
                     l +++e +e++ +e+E+ +ae+ +  ee+++l+e  ++ ++   + +         k++ + el + q++v  Le +  + e +++ +  +
      CDO73152.1 638 LTEAQEFLESAQTEMESLRAELVQKDEELDRLREDVSNPSSRAGTQSldeemlnALKQQHALELSEAQSQVRALEDALFKSEAQVHTLQRQ 728
                     3344444555555555555555555555555555444443333333322222222222222245555555555555555444444444333 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  25.1   8.3e-06    0.0099     248     484 ..     509     739 ..     488     743 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.3e-06
                 SSSSSHHHHHHHHHHHHHHHHTT-..-HHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSST CS
        EzrA 248 lniekeieelekkieeilerlkel..eledveeelktieeeidsLyddlekEveA....kkeveknlkelkeklehlekqnkelkeeldrlkqsYeLse 340
                 l + +++++le+ i++  + +++l   +e+ + e + +e + d L   l++E  A      e ++  +el+++l +++k +++l++e d+l+q   Ls+
  CDO73152.1 509 LALSEKVDSLETTIQSRDAVIAQLrtSIEELRREKESVEGDRDRLQAALDAERSAlekdSTELQQAYSELQTELARARKSVQDLEDERDKLRQ---LSN 604
                 355667777777777777777777446899***********************995433456888889999*********************7...*** PP

                 TTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS-S-T CS
        EzrA 341 eeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrkieksnLPgiP 439
                 +++e++r l++ +++ ++++ +l+ +l e+ +a +e qe le+++ ++e +  ++ + +e+l+ lr+d ++   ++           ++++++ L  + 
  CDO73152.1 605 SNVEEIRRLTDSVHTQSSQLSSLRGELGERIQALTEAQEFLESAQTEMESLRAELVQKDEELDRLREDVSNPSSRA---------GTQSLDEEMLNALK 694
                 *******************************************************************977644333.........23444555555566 PP

                 TTHHHHSTTTSTTTHHHHHHHT-TT--HHHHHHHHHTTTTTSGGG CS
        EzrA 440 esyleelkeasdeieelakeLekkpinikevnkrldeardlvekl 484
                 ++   el+ea+ ++++l++ L k+  +++++++++ + +d + +l
  CDO73152.1 695 QQHALELSEAQSQVRALEDALFKSEAQVHTLQRQIAMLEDELAHL 739
                 666777777777777777777777777777777777777766665 PP

>> KNOX2  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.022        26      18      45 ..     228     258 ..     224     259 .. 0.83
   2 ?    6.5   0.5    0.0047       5.7      19      47 ..     624     655 ..     622     656 .. 0.88
   3 ?   -2.8   0.5       3.8   4.5e+03      18      43 ..     689     714 ..     688     716 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
       KNOX2  18 vLvkYkeeLtrpve...EAteFlreieqqLq 45 
                 +Lv+ k  L+  ve    A ++l+ ie+qL+
  CDO73152.1 228 LLVSEKASLSSSVErleSAESALKGIEEQLE 258
                 677778888888888868************7 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0047
       KNOX2  19 LvkYkeeLtrpve...EAteFlreieqqLqsL 47 
                 L + + eL   ++   EA eFl++ +++++sL
  CDO73152.1 624 LSSLRGELGERIQaltEAQEFLESAQTEMESL 655
                 6677888988888888************9998 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.8
       KNOX2  18 vLvkYkeeLtrpveEAteFlreieqq 43 
                 +L   k++ +  + EA +  r  e+ 
  CDO73152.1 689 MLNALKQQHALELSEAQSQVRALEDA 714
                 89999999999999999988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2909  (0.162251); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       243  (0.0135535); expected 17.9 (0.001)
Passed Fwd filter:                       189  (0.0105416); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 5.25u 0.47s 00:00:05.72 Elapsed: 00:00:01.03
# Mc/sec: 2613.68
//
Query:       CDO73153.1  [L=350]
Description: hypothetical protein BN946_scf185007.g208 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-41  138.8  20.6    9.8e-08   32.6   0.0    7.2  7  WD40          WD domain, G-beta repeat
    4.8e-17   62.0   0.1     0.0038   17.5   0.1    5.4  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    4.5e-05   22.6   0.5       0.44    9.4   0.0    3.7  4  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    0.00053   19.9   0.0       0.32   10.9   0.0    2.5  2  eIF2A         Eukaryotic translation initiation factor eIF2A
     0.0011   18.4   0.0       0.22   10.8   0.0    3.2  3  WD40_like     WD40-like domain
  ------ inclusion threshold ------
       0.14   10.6   0.0       0.25    9.8   0.0    1.3  1  Cytochrom_D1  Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.3e-07   0.00097       3      38 .]      56      92 ..      54      92 .. 0.93
   2 !   16.0   0.1   5.5e-06     0.017      12      38 .]     108     134 ..      96     134 .. 0.86
   3 !   18.7   0.0   7.8e-07    0.0023       5      38 .]     147     180 ..     144     180 .. 0.90
   4 !   16.5   0.1   3.9e-06     0.012       6      38 .]     189     222 ..     184     222 .. 0.90
   5 !   32.6   0.0   3.3e-11   9.8e-08       2      38 .]     227     264 ..     226     264 .. 0.94
   6 !   17.4   0.5     2e-06    0.0061      10      38 .]     276     308 ..     269     308 .. 0.83
   7 !   27.6   0.4   1.2e-09   3.5e-06       2      37 ..     313     349 ..     312     349 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.3e-07
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                + r l+GH   ++++ +  d + l+s+s Dg++ +Wd
  CDO73153.1 56 PRRALRGHlAKIYAMHWATDRRHLVSASQDGKLIVWD 92
                66889***999*************************9 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.5e-06
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +v  +a+sp+g+++a+G+ D+ + i++
  CDO73153.1 108 WVMTCAYSPSGNFVACGGLDNICSIYN 134
                 488889*******************97 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 7.8e-07
                 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 r+l++Hs+  ++++f  d + ++s++ D t+++Wd
  CDO73153.1 147 RELSAHSGyLSCCRFLNDRQIVTSSG-DMTCMLWD 180
                 6899**555************99889.*******9 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 3.9e-06
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ H ++v sl+  p+++ ++sG  D t ++Wd
  CDO73153.1 189 EFSDHtGDVMSLSLGPNQNVFVSGACDATAKLWD 222
                 6899*888****************77*******9 PP

  == domain 5  score: 32.6 bits;  conditional E-value: 3.3e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++t+tGH s++++++f p+g+ +a+GsdD ++r++d
  CDO73153.1 227 KATQTFTGHeSDINAVSFFPNGDAFATGSDDASCRLFD 264
                 6689*****999************************98 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 2e-06
                 S.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ss...vtslafspdgawlasGsdDgtvriWd 38 
                 H +    +ts+afs +g+ l+ G dD t+ +Wd
  CDO73153.1 276 HdNIlcgITSVAFSISGRILFGGYDDWTCNVWD 308
                 6422666**************8889*******9 PP

  == domain 7  score: 27.6 bits;  conditional E-value: 1.2e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + +++ltGH + v++l +s+dg  l++Gs+D t+r+W
  CDO73153.1 313 ERVGVLTGHeNRVSCLGVSSDGMALCTGSWDSTLRVW 349
                 56899****999************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.3e-06    0.0038      39      82 ..      65     108 ..      51     113 .. 0.89
   2 !    7.2   0.0    0.0021       6.2      41      71 ..     109     139 ..     104     182 .. 0.72
   3 !   12.2   0.0   5.8e-05      0.17      28      84 ..     186     239 ..     149     243 .. 0.84
   4 !   11.0   0.0   0.00013       0.4      36      78 ..     234     276 ..     229     281 .. 0.88
   5 !   11.9   0.0   7.3e-05      0.22      40      88 ..     282     329 ..     274     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                   ++ +++W  d + L+ a +dg++ + da++++ vh+++  s+ 
   CDO73153.1  65 AKIYAMHWATDRRHLVSASQDGKLIVWDAYTTNKVHAIPLRSSW 108
                  68999*********************************998874 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0021
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  v   a++p+g++ a +  d+ +++++ +s++
   CDO73153.1 109 VMTCAYSPSGNFVACGGLDNICSIYNLHSKE 139
                  667899******************9988765 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 5.8e-05
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  rv+++  +++ + v sL+  p+ ++++ +  d + +l d+ sgk  ++++ ++++ +
   CDO73153.1 186 RVVEF--SDHTGDVMSLSLGPNQNVFVSGACDATAKLWDIRSGKATQTFTGHESD-I 239
                  45555..789999***********************************9988764.5 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  +++s ++++++ p+g  +a + +d ++rl+d+   + +++++ 
   CDO73153.1 234 GHESDINAVSFFPNGDAFATGSDDASCRLFDIRADRELNAFTH 276
                  57899***************************99999888865 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 7.3e-05
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                   ++s+a++ +g++L  +y+d ++++ d  +g+ v  l+ +++ +v+clg
   CDO73153.1 282 GITSVAFSISGRILFGGYDDWTCNVWDTLKGERVGVLTGHEN-RVSCLG 329
                  699**********************************99988.6***97 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.14   4.1e+02     189     221 ..      66      98 ..      56     108 .. 0.77
   2 !    9.4   0.0   0.00015      0.44     188     248 ..     107     166 ..      96     185 .. 0.84
   3 !    5.8   0.0    0.0019       5.7     170     217 ..     221     266 ..     186     277 .. 0.72
   4 ?    2.2   0.0     0.023        70     186     214 ..     321     349 ..     300     350 .] 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.14
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvylede 221
                 +i    +++d   l  as+dG++  +  y +++
  CDO73153.1  66 KIYAMHWATDRRHLVSASQDGKLIVWDAYTTNK 98 
                 666667778888889999999999888888776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00015
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhk 248
                 s +++ a+sp G  +a    d +   + ++ ++ ++ +   e   h G  ls+  fl++ +
  CDO73153.1 107 SWVMTCAYSPSGNFVACGGLDNICSIYNLHSKEGNNVKGARELSAHSGY-LSCCRFLNDRQ 166
                 579999******************************************6.67777776654 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0019
    Ge1_WD40 170 gelsveeieegllkieehsliveaafspdGtalatasedGevkffqvy 217
                 +++++ ++++++    ++s i   +f p+G a at s d   ++f + 
  CDO73153.1 221 WDIRSGKATQTFT--GHESDINAVSFFPNGDAFATGSDDASCRLFDIR 266
                 5555555444433..355789999*********************996 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.023
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkff 214
                 ++  +++  +s+dG al t s d +++ +
  CDO73153.1 321 HENRVSCLGVSSDGMALCTGSWDSTLRVW 349
                 4457889999*************999987 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00011      0.32      61     134 ..      66     137 ..      60     191 .. 0.73
   2 !    6.6   0.0    0.0021       6.4      49      91 ..     226     266 ..     176     348 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEEEEES..--EEEE-TTSSEEEEE-TTSSS-EEEEEETTT CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdl.kvkviskleeqk..rNtiffspkgklvllaGfgnlaGeleiwdvkk 134
                 +i++++W +++++  ++   ++ k  ++d  + ++++ +  ++    t  +sp+g++v+ +G+ n+    +i++ ++
  CDO73153.1  66 KIYAMHWATDRRH--LVSASQDGKLIVWDAyTTNKVHAIPLRSswVMTCAYSPSGNFVACGGLDNI---CSIYNLHS 137
                 5888888887775..46777888888888845778877665551156889**************99...56666553 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0021
                 --EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS CS
       eIF2A  49 kksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlk 91 
                 +k  +    +e +i +v+  p+++ fa   G  +a+  lfd +
  CDO73153.1 226 GKATQTFTGHESDINAVSFFPNGDAFA--TGSDDASCRLFDIR 266
                 233333333445566666666666665..46666666666665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   7.3e-05      0.22       6     127 ..     112     242 ..     107     247 .. 0.68
   2 ?    2.8   0.0      0.02        61       2      36 ..     238     272 ..     237     278 .. 0.86
   3 ?    1.5   0.0     0.052   1.6e+02       5      50 ..     285     330 ..     282     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
   WD40_like   6 idiskkgslilyGgkddkctvlklesle..svsivesfedS...vifvklldddlilvvtlDGtillsllenee.evenekieedistvkv.iddklli 97 
                   +s+ g++++ Gg d+ c +++l+s+e   v    +++     +  +++l+d +i+  + D t +l ++e +  +ve  +   d+   +   ++++ +
  CDO73153.1 112 CAYSPSGNFVACGGLDNICSIYNLHSKEgnNVKGARELSAHsgyLSCCRFLNDRQIVTSSGDMTCMLWDIEAGVrVVEFSDHTGDVMSLSLgPNQNVFV 210
                 568999******************987621444445554321226779*****************9999999987888888888886665423444444 PP

   WD40_like  98 .Gtn..kGsiyvfskdlqleevllgqsseIkei 127
                  G+   + +++      +  +++ g++s+I+ +
  CDO73153.1 211 sGACdaTAKLWDIRSG-KATQTFTGHESDINAV 242
                 1443112333334444.5666777777777665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.02
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvs 36 
                 +i ++ + ++g+ ++ G++d  c++++++ + +  
  CDO73153.1 238 DINAVSFFPNGDAFATGSDDASCRLFDIRADRELN 272
                 577888999*******************9988765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.052
   WD40_like   5 sidiskkgslilyGgkdd.kctvlkleslesvsivesfedSvifvkl 50 
                 s+ +s  g  il+Gg dd +c v ++  +e v ++++ e+ v    +
  CDO73153.1 285 SVAFSISG-RILFGGYDDwTCNVWDTLKGERVGVLTGHENRVSCLGV 330
                 77787777.78999988769**********99999998887765555 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   8.3e-05      0.25     336     364 ..      84     121 ..      55     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.3e-05
                   -SSEEEEEETTTTEEEEEEE.........--SEEEEEE CS
  Cytochrom_D1 336 gkdalvvyDdktlklkkvik.........lvtPsGkfn 364
                   ++++l+v+D++t ++++ i+         + +PsG f 
    CDO73153.1  84 QDGKLIVWDAYTTNKVHAIPlrsswvmtcAYSPSGNFV 121
                   4557****************999998888889999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.34s 00:00:00.97 Elapsed: 00:00:00.53
# Mc/sec: 1974.18
//
Query:       CDO73154.1  [L=110]
Description: hypothetical protein BN946_scf185007.g209 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-06   28.3   0.0    2.8e-06   27.9   0.0    1.2  1  dsrm      Double-stranded RNA binding motif


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.6e-10   2.8e-06       5      65 ..      10      70 ..       8      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.6e-10
                HHHHHHHTTSEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm  5 LqeycqkkgkppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedale 65
                L+ y+q +g  p  ++  ++ +p ++++++ ++k++g++ g+G+g   + A  +AA +al 
  CDO73154.1 10 LNNYLQARGLVPMLSWEDKPDGPRHETRWISQCKIGGEVLGTGTGPKLNVARDAAANEALV 70
                78888888877777777777777777********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.46
# Mc/sec: 726.19
//
Query:       CDO73155.1  [L=80]
Description: hypothetical protein BN946_scf185007.g210 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-06   26.7   0.1    8.8e-06   26.3   0.1    1.1  1  dsrm      Double-stranded RNA binding motif


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   4.9e-10   8.8e-06       5      64 ..       8      67 ..       6      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.9e-10
                HHHHHHHTTSEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHH CS
        dsrm  5 LqeycqkkgkppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedal 64
                L+ y+qk+g      +++++++++++  +++t+k+ng+++gs+++  K  A+  AA + l
  CDO73155.1  8 LNNYLQKQGQSSALGWTESQTGAGNNILWTMTCKLNGEVMGSATAHQKGAAKEEAARQTL 67
                899999999999999**********77*****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 527.62
//
Query:       CDO73156.1  [L=528]
Description: hypothetical protein BN946_scf185007.g211 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-32  110.6   0.0    1.3e-31  110.1   0.0    1.2  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    3.9e-11   43.1   0.0    7.1e-11   42.3   0.0    1.4  1  zf-UBP    Zn-finger in ubiquitin-hydrolases and other protein
      0.002   17.8   0.0     0.0093   15.6   0.0    2.0  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   2.1e-35   1.3e-31       1     245 [.     197     507 ..     197     520 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 2.1e-35
                 -EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGG.GTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell..kskskavsPkklkktlsklaks.fsgy 95 
                 +Gl+N+  + ymn v+ +L+++p+lr ++lls                 n+ gk+ el+k+++ l k+l+  +  +++vsP+++++ +++++   fs  
  CDO73156.1 197 IGLNNIKRNDYMNVVIHSLLHVPPLRdHLLLS-----------------NYRGKESELLKRFAALAKKLWnpRLFKSQVSPHEFLQEVNRVSAAkFSLE 278
                 59************************555555.................23345556*************9855689***********9988777**** PP

                 STCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
         UCH  96 kqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks................................................. 145
                 kq D  Efl  lL+ lh+dl           ++k+n+s+i + f+g+++                                                  
  CDO73156.1 279 KQGDPVEFLGWLLNHLHKDLGG---------TKKKNSSVIFSTFQGEVRMetqqvlvrpdagpnekprfdidreiksvvspflflavdlpppplfqdsv 368
                 **********************.........89****************99************************************************ PP

                 ..............................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S.EEE-GGGBSS-BTTS-TCS-BEEEEEEEEEE. CS
                 ..............................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
         UCH 146 ..............................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe.eldlssylaeekkkkteekkkYeLiavvvHs. 211
                                               + k +rlP++ i+h+kRf+ n+  ++K+ t v+fp+  ld   yl+   +++ + ++ Y+Lia vvH  
  CDO73156.1 369 ekniipqvsiqsvlakydgqktqefagqlrRFKCQRLPPYVILHFKRFTKNQFvEEKNPTVVNFPLrGLDFRDYLD---APPSHPSTVYDLIANVVHEs 464
                 *****************************************************************659******98...555667888*********73 PP

                 ..S.CTTSEEEEEEEE......CTTTTEEEEEETTEEEEE-HH CS
                 ..x.xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx RF
         UCH 212 ..G.slssGHYvayik......nekngkWykydDetvkevkee 245
                   G ++++G  v  ++        +n+kW++++D  v+e+++e
  CDO73156.1 465 avGtTHDKGSTVWKVQlragagGGENEKWFQIQDLIVEEIRKE 507
                 3365566666555444566666666778************987 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.2e-14   7.1e-11       1      63 [.      93     154 ..      92     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.2e-14
                 -TTTH--.SSEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT--EEETTTTEEBE-GC CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrksnghalkHyeetrHplavdlstlsvycyscddevedke 63 
                 Cs++ s+  n++ CL Cg++++gr +n+ a +H+ +++H+++++l+t +vy +++ + v d++
  CDO73156.1  93 CSVSLSN-INIYGCLVCGKYFQGRGRNSYAFAHAIHDDHHVFINLETTKVYVLPDGYPVADPS 154
                 8888877.9*********************************************999999876 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-06    0.0093       2     285 ..     198     465 ..     197     501 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr.nlalshlakeckkehcLlcElgflfdmldkak..glncqasnFlralssipeasalglileeeeetekssais 97 
                 GL n   n Y+N ++  l ++pplr +l+ls       ke+ Ll  +  l + l + +  ++++  ++Fl+ ++ ++ a+++ l  e+  +    +++ 
  CDO73156.1 198 GLNNIKRNDYMNVVIHSLLHVPPLRdHLLLSNY---RGKESELLKRFAALAKKLWNPRlfKSQVSPHEFLQEVNRVS-AAKFSL--EK--Q---GDPV- 284
                 8999999******************99999999...9******************9999999**************9.999999..32..2...2333. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx..............xxxxxxxxxx RF
       UCH_1  98 lssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgsek.srksstlvldlkyPkpsne..............kkeakvtfas 181
                       +f  +ll++l+k+l  tkk   +++s i + ++ ++  +++    +     +++  + +d        e                ++   f++
  CDO73156.1 285 ------EFLGWLLNHLHKDLGGTKK---KNSSVIFSTFQGEVRMETQQVLVRPDAgPNEKPRFDIDR-------EiksvvspflflavdL-PPPPLFQD 366
                 ......5889999999999888876...455555555633332222222112111122222222221.......0112223334444421.22245777 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 182 ilksslerekttrawCekCkryqpteqrktvk.....nlPpvLalnakleeeeelelwktknwlpleiklsldedknleeklkeerekakaekeikvYe 275
                  +++++  + +++++  k + ++++e   +++     +lPp ++l+ k+++++  ++ ++kn    ++ l+  +     + l++       ++ ++vY+
  CDO73156.1 367 SVEKNIIPQVSIQSVLAKYDGQKTQEFAGQLRrfkcqRLPPYVILHFKRFTKN--QFVEEKNPTVVNFPLRGLDF---RDYLDAP-----PSHPSTVYD 455
                 77777777777777776554444444333333344558888888888887666..56666655555555522221...2333333.....447778888 PP

                 xxxxxxxxxx RF
       UCH_1 276 Lqsvvvhigd 285
                 L++ vvh + 
  CDO73156.1 456 LIANVVHESA 465
                 8888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3567.15
//
Query:       CDO73157.1  [L=582]
Description: hypothetical protein BN946_scf185007.g212 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-40  136.6   0.0    1.1e-24   87.2   0.0    3.1  2  Rsm22     Mitochondrial small ribosomal subunit Rsm22


Domain annotation for each model (and alignments):
>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   6.3e-29   1.1e-24       3     222 ..     128     387 ..     126     407 .. 0.78
   2 !   41.9   0.0   3.8e-15   6.8e-11     216     275 .]     456     516 ..     433     516 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 6.3e-29
       Rsm22   3 esiaYalarlpatyavlrrvLdelaerv.pdflPkslldvgegpgtalwaaselwe...e................leevlvidaseelleiskelaad 81 
                 ++ a+a   lp++y+++++vLd +++r  p+++ + ++d g+ +g +lwa  + ++   +                l +++ id+ e l +i+k l++d
  CDO73157.1 128 DATAFATVALPSHYSAIYSVLDHVKKRLgPEWQVQRVIDWGAATGSGLWASGHAFQgpsHerhpsdmaeiqiahssLDSYIGIDKREGLVRIGKRLIRD 226
                 67899********************99669********************9888864322111111111111111133466788888899999999999 PP

       Rsm22  82 apelk.eaalrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal................ka 159
                  +     + +++s+ ++ +   ++    L + +++L +l    +r++lvk++W++ ++++v++++     f+ v eaRe++                  
  CDO73157.1 227 VEMGGlDVSWQKSFHEDNIVDRTNgaqVLAMSAFLLSSLPSpIERKALVKEMWESGAEVMVLIDH----DFESVAEAREQFlklgrkeledpsseqyAL 321
                 87654145677777766543332256567778899999*9889*******************985....69999999999999999999***9997667 PP

       Rsm22 160 agfhivAPCPHeaaCPlvate...dwChFsqrvaRlslhrlaksasvpvedekfsyvakerqpras 222
                 +g h+vAPCPH+ aCPl +++     C Fsqr++R +  r +k +   +e+  +syv   r++r s
  CDO73157.1 322 RGSHVVAPCPHDGACPLYQPGhskLVCSFSQRLQRPEFIRKTKHSGTGHENMDYSYVVIRRGSRPS 387
                 89****************99977779*****************99***********5555544432 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 3.8e-15
       Rsm22 216 erqprasaaaRvvrptkvrskkvlidlCsedetlqrlvvtKrkG.eaykaArkaeWGDrlp 275
                 +   +a +++R+v p+ +rs+++++d C+ ++++ r ++ K++G + +  Ark+eWGD++p
  CDO73157.1 456 TLRHEAYSWPRLVFPPLKRSGHIILDGCTAEGQIMRMTIPKSQGkQPFYDARKSEWGDLFP 516
                 45566778************************************888***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3989.64
//
Query:       CDO73158.1  [L=292]
Description: hypothetical protein BN946_scf185007.g213 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-20   73.5   0.0      3e-20   72.8   0.0    1.4  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   1.7e-24     3e-20      15     185 ..      94     251 ..      54     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1.7e-24
                   EEEEESSS-TTSGGG--EEEEE-STSTSSC..S-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEGGGHHHHHH CS
  Ribosomal_L1  15 ialnlttkkpkkadqrkpgkipLphplgke..vkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladdrimpllpk 109
                   + l + ++++ k ++  +g+ +Lp  ++ +   +i++++++ qae   eak+ag  a+++g+ +l + +       ++  +  lfl++ ++++ ++ 
    CDO73158.1  94 YELVI-KTEMGKGSTIPKGRFNLPRETKAQtkDRILVFAEGRQAE---EAKKAG--ADIVGGLELVEGI------INGRHQATLFLCSRSLIRGITP 178
                   45555.556667777788999*****88776799***********...******..*************......89******************99 PP

                   HCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L1 110 lLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvek 185
                    LG+v+g+r++mP     +gtv++d+   ++++++ t++ + dk++++  +++k++f+  +++ N+  +++ ++++
    CDO73158.1 179 KLGRVLGPRGLMPSER--RGTVTDDIGGFIRRLKG-TSEWKGDKEGTIRQPIAKMHFPVPDVVRNVRYFLNVVKRA 251
                   9***************..*****************.*******************************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2017.80
//
Query:       CDO73159.1  [L=186]
Description: hypothetical protein BN946_scf185007.g214 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   44.1   5.1    9.8e-09   35.5   1.8    2.3  2  MRP-L28   Mitochondrial ribosomal protein L28


Domain annotation for each model (and alignments):
>> MRP-L28  Mitochondrial ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.8   5.5e-13   9.8e-09      74     128 ..      74     128 ..      64     139 .. 0.92
   2 !    9.8   0.1   4.6e-05      0.82     122     146 ..     149     173 ..     135     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5.5e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCTTCS-XXT CS
     MRP-L28  74 errallekqwaryrqqekekdeqlirqqleaqeealeeLkkvseeLYeaAvkrde 128
                 + ++++e++w +++++ ++ +++++++ +e++++a+e+L+ v ++LY++A+k++ 
  CDO73159.1  74 QAHETIERAWFLHQRHVRRTRMAELQRKFESVRNAMETLRMVAPKLYAEANKEED 128
                 689************************************************9875 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 4.6e-05
                 TCS-XXTT.STTXXXXXXBSSXXXXX CS
     MRP-L28 122 aAvkrdeg.llPlelkgptetPPikn 146
                 +Av+     l+P el++pt+tPP kn
  CDO73159.1 149 KAVEARIRgLFPRELRIPTDTPP-KN 173
                 566655444**************.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1359.45
//
Query:       CDO73160.1  [L=467]
Description: hypothetical protein BN946_scf185007.g215 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-20   72.7   1.7    3.3e-20   72.5   0.3    1.9  2  PCI       PCI domain
  ------ inclusion threshold ------
       0.37   11.1   9.4       0.15   12.4   3.5    3.1  3  DUF5517   Family of unknown function (DUF5517)


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.3   1.1e+04      17      46 ..     175     187 ..     164     227 .. 0.56
   2 !   72.5   0.3   3.7e-24   3.3e-20       2      99 ..     318     415 ..     317     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHHH CS
         PCI  17 gfseelkdleeelladdglaqllesLekkv 46 
                 + +++l++l                 ++ +
  CDO73160.1 175 RLQKILQEL-----------------YRST 187
                 444444444.................2222 PP

  == domain 2  score: 72.5 bits;  conditional E-value: 3.7e-24
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesg 99 
                 +++dl+ a++++++ +++++l+++++++++d+++ q++ +L + +r++ l+ ++k+y++++l+ lak+l+++ +evE++l+ lI +g+++++idq++ 
  CDO73160.1 318 AMTDLVDAYQRREVHAAEKILRENKSTIMDDPFIKQYIGELLRSLRTQYLIDLIKPYTRLELSFLAKQLNVDHEEVEELLIGLILEGKVEGRIDQVAM 415
                 799********************************************************************************************875 PP

>> DUF5517  Family of unknown function (DUF5517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.5   1.6e-05      0.15       8      74 ..     151     229 ..     146     242 .. 0.76
   2 ?   -0.2   0.0      0.14   1.3e+03      59      85 ..     314     340 ..     307     347 .. 0.75
   3 ?   -1.8   0.0      0.42   3.8e+03      33      52 ..     412     431 ..     370     441 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
                 XX--EEEEEEEEEEEEEEEEETTEEEEEEEEEE.......TTTEEEEE.....EEESTT--HHHHHHHHHHHHHHHTT- CS
     DUF5517   8 keeellekqnsvfylltlgrkpygsylhikiel.......dedeklek.....eiyadniklenelrqlkrlyevyqsv 74 
                 k++ l  k n  +  l l rk yg   +i  el       + d++ +k     eiya +i++ ne r+ k+l e+y++ 
  CDO73160.1 151 KNDRLSAKTNLKLAKLWLDRKEYGRLQKILQELyrstigeNVDDQAQKgtqllEIYALEIQMHNERRNYKKLKEIYNAS 229
                 677788888888999999999999988887776333333223444444445669**********************864 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHTT--STTHHHHHHH CS
     DUF5517  59 nelrqlkrlyevyqsveiddaqkaiqk 85 
                  +++ +  l + yq  e+  a+k ++ 
  CDO73160.1 314 PQIKAMTDLVDAYQRREVHAAEKILRE 340
                 566778889999999999999997654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.42
                 EEEEEEEETTTEEEEEEEES CS
     DUF5517  33 ylhikieldedeklekeiya 52 
                  + +++el+    l+k+ ya
  CDO73160.1 412 QVAMRLELEPKHSLQKKRYA 431
                 23345555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3282.06
//
Query:       CDO73161.1  [L=2277]
Description: hypothetical protein BN946_scf185007.g216 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-40  137.6   0.3    1.7e-35  122.6   0.4    2.3  2  PIP5K       Phosphatidylinositol-4-phosphate 5-Kinase
    1.7e-28   99.5   0.0    2.8e-28   98.8   0.0    1.2  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
      1e-16   60.8  11.5      1e-16   60.8  11.5    2.0  2  FYVE        FYVE zinc finger


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.4   2.8e-39   1.7e-35      10     166 ..    2030    2200 ..    2022    2204 .. 0.89
   2 !   13.2   0.0   6.5e-06     0.039     232     274 .]    2202    2248 ..    2200    2248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 2.8e-39
                  ---SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHT....T-TT--S--EEEEEEEE.ETTEEE...........EEEEEE-SS-TTS--S CS
       PIP5K   10 seGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvk....enpnsLltrfyglhrvklkggkkv...........rfvVmenlfptdkeih 91  
                  s GkSgs+f  t D++fi K ++++e + +  + p+Y+++++    +n+ +Ll++++g++++++++++k            +++Vmenlf+  ++ +
  CDO73161.1 2030 SGGKSGSAFLKTLDDRFIAKELSRAELQAMETFAPAYFDYMSsavvANRPTLLAKIFGCYKITFRKSHKHqsgskfkvtqmNLLVMENLFY-GRHFS 2125
                  88***************************************97777899*************9994444444555566666*********5.67889 PP

                  EEEEE-S--TT-S--HHHHTSSS-EEEHHHHHHHST...EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB CS
       PIP5K   92 eryDLKGstvgReakkkeeekkektlkDlDliekkek..lklgkekreelleqlekDvefLeslnimDYSLLlGihn 166 
                  + yDLKGst +R+++++ +e  +++l D +l++ ++   + + +++++ l  +l +D++fL+++n+mDYSL++G+ n
  CDO73161.1 2126 KIYDLKGSTRNRHVQSTGRE--NEVLLDENLVQTAHLapFYVREHSKRILRGALFNDSKFLADINVMDYSLVVGVDN 2200
                  ***************76555..568*********87799***********************************964 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.5e-06
                  --B--------------....--------TTHHHHHHHHHHHHHHHT CS
       PIP5K  232 LqkynlkKklehalksl....kkdkksisavpPkeYaeRFlkfieki 274 
                  + +y++ Kkle+++k +      +k + + + Pk+Y++RFl+ +e++
  CDO73161.1 2202 IRTYTWDKKLESWVKDTaflgGANKGEPTIIGPKQYRHRFLSAMERY 2248
                  679*************999*98888899***************9975 PP

>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   4.6e-32   2.8e-28     136     354 ..     517     743 ..     499     755 .. 0.88

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 4.6e-32
                 XSTHHHHHHHHHHHH.HCHCCCS.....EECSCCC.EECCCCEECECTTSEEESEEEESS--SSTTSSCEEECEEEEEESS-BS--HHCCHHHCCCCSC CS
  Cpn60_TCP1 136 skeaeelsklvvdAv.klieene.....keldlgr.ikvvkieggsledselveGlvldkgvlspdmpkklenakvllldvsLeiektetkttvvlsda 227
                 ++++e l kl+++   +l+ +++      ++d+ r +k++ki gg  +dse v+G v+ k+v++++m++ l+n++v+l++++Le+ + e        + 
  CDO73161.1 517 REWEETLLKLALRVAsELTFTAHphrqgADMDVRRyVKIKKIPGGAPRDSEYVDGAVITKNVAHKQMSRNLRNPRVMLVTFPLEFHRVEG-------QY 608
                 556666666666666555555556666888999999**************************************************9955.......56 PP

                 CHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT--EBSCGGGGG.CGC-EEEEEEEECCETT... CS
  Cpn60_TCP1 228 eeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGatavssledlt.peelGtakkveeekigs... 322
                   + ++ ++e+++l +l  +i+++   vv+++k+++ lal+ lak++i ++r vk + ++ +a++t + ++ss+++l  +  lG++ +++ +++     
  CDO73161.1 609 MHFGQIFRQEKEYLGNLASRIAALRPHVVLAEKSVSRLALDALAKRQIAVARAVKPSAVQFVARMTQGDVFSSMDKLAlEPRLGHCARFRLQTFDHpli 707
                 6789999***********************************************************************5578**********9976666 PP

                 ....CCEEEEECESSSSXEEEEEEESTCCCHHHHHH CS
  Cpn60_TCP1 323 ....ekttiieevksgkiatillrgatdtvldeier 354
                     ++++ +e+++s+  +tillrg   ++l  +++
  CDO73161.1 708 pgrrKTYMRFEGCNSEMGCTILLRGGDIETLRRVKK 743
                 666678888*****************9999988875 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8  11.5   1.7e-20     1e-16       2      67 ..     207     271 ..     206     272 .. 0.95
   2 ?   -2.4   0.1      0.89   5.3e+03      28      33 ..    1138    1143 ..    1133    1146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.7e-20
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClaels 67 
                 +w+dd+ +k+C  C++ F+++rr+hhCr+CG+++C++C s+ ++ + +  ++  vrvC+ Cl++l 
  CDO73161.1 207 YWMDDELCKECYDCKSVFTTWRRKHHCRICGQIFCSRCASNIIKGT-RFGQDGMVRVCNLCLDKLA 271
                 7******************************************888.99************99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.89
                  -TTT-- CS
        FYVE   28 CrlCGk 33  
                  Cr CG+
  CDO73161.1 1138 CRKCGS 1143
                  999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.31s 00:00:01.38 Elapsed: 00:00:00.47
# Mc/sec: 14497.36
//
Query:       CDO73162.1  [L=576]
Description: hypothetical protein BN946_scf185007.g217 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-101  340.1   9.1    1.5e-93  314.6   4.5    2.1  2  LTV            Low temperature viability protein
  ------ inclusion threshold ------
       0.32   11.7  12.8        1.1   10.1  12.8    1.9  1  CaM_binding    Plant calmodulin-binding domain
          9    6.6   8.1          7    7.0   5.9    2.1  2  Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus


Domain annotation for each model (and alignments):
>> LTV  Low temperature viability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.6   4.5   2.5e-97   1.5e-93       9     382 ..      52     417 ..      48     420 .. 0.77
   2 !   28.0   0.1     3e-10   1.8e-06     311     383 .]     422     547 ..     417     547 .. 0.75

  Alignments for each domain:
  == domain 1  score: 314.6 bits;  conditional E-value: 2.5e-97
         LTV   9 qlvhRsqnDpliaDedApqhVLvpvekpnkkkkkkskklkdleselkse.kevrknegeaakyGiyFDDseYDYmqHLreigs.....eavfveakkkk 101
                  +vhRsq+Dpli+D++A++hVL pv+ +n k k++++ ++  +   +   +++r n geaa yGiy+DD+eYDYmqHL+++g      +++++ea   +
  CDO73162.1  52 DVVHRSQRDPLIHDPEASKHVLKPVQRSNLKGKTRADLEQLISP-AELArDKARPNIGEAALYGIYYDDTEYDYMQHLKPVGLkedgvDSIWLEA--PA 147
                 69*************************99877777666544443.3333379******************************9999999999999..34 PP

         LTV 102 kkkekgkkkkkkkledlllllpssvlpsefeekvtlqdqqkvpdeiaGfqpDmDPrLRevleaLedeayvddeeeeedDiFaelakdgeevde..eefe 198
                 k k+kgk+k+  +l    l lp++ l+s+ e ++++++q+++p +iaGfqpDmDP+LR+vleaLed+a+v+d  +  dD+F el+kdge + +   ef+
  CDO73162.1 148 KAKGKGKAKDPISL----LDLPEDTLASKSELPRNFEAQENIPSSIAGFQPDMDPHLRQVLEALEDDAFVED--DLGDDFFGELVKDGERAPDepLEFQ 240
                 55566666443333....469**************************************************6..889*********9976443124555 PP

         LTV 199 ..eeeddewdsdatekadeqpkkedeeeeeedeenedweadfakfkkeekksreadddeee..seeqssvae.......krkkkrkGAltdfseySmtS 286
                   ee  ++ ++d    a        ++  e +ee+++wea+fa+fk+ ++++ + d+++ +  se  ++v +       + k++rkG  +d s+ySm+S
  CDO73162.1 241 fqEEGLQDGEED----A--------SKGLEGAEEEDSWEARFARFKQAQNSASRDDASDVDaySEGGDTVGTlprlpviGGKRRRKG-TSDASGYSMSS 326
                 323223333333....3........122345678899**********9988773333333345777777777876655435666665.79********* PP

         LTV 287 SalaRteqltlLDdrFekleekYdddeeeeedeeeleeevdmksvvsersDfesilddflnnYekegkkrkvlkkkeekkelkqladevrkerrse 382
                 S++ R+e+lt+LD+rF++++ +Y+d++e +e+e  l+ + +  ++++ r+Dfes++d+fl++Ye  ++k + +      ++ ++l d +rk ++++
  CDO73162.1 327 SSMWRNEHLTVLDERFDQIQLEYEDSDE-DEEEPTLDDPDEAPDLITSREDFESMMDEFLEKYEVISGKMRPV---LPGTATEKL-DTIRKALGEA 417
                 ***********************88775.444455577777778889****************9965555544...344556666.7777777766 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 3e-10
         LTV 311 ddeeeeedeeeleeevdmksvvsersDfesilddflnnYek.................................egkkrkvl................. 359
                 + ee ++d++++ +++d ++  ++r+D+e+il +++n  ++                                 +                        
  CDO73162.1 422 EAEESDTDDDDILRPLDVDD-KKDRWDCETILTTYSNLENHprlirarnnkpvpkirldpktgmpsieeerpskT------Ktkrpdssatdeedesrp 513
                 56777888888888888887.66***************9998888777776666666666666666665555440......055556666666666666 PP

         LTV 360 ..........kkkeekkelkqladevrkerrser 383
                           ++ eekk++kq+++  r  rr+e+
  CDO73162.1 514 vrvtvarkkgETPEEKKARKQAVKAERHARRMEK 547
                 6777777777********************9986 PP

>> CaM_binding  Plant calmodulin-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  12.8   0.00018       1.1      19     108 ..     490     576 .]     477     576 .] 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
  CaM_binding  19 sslrklklrkrkkaleekeskkeereslrkfnprkprelpeesekeaekVvL.rhqdveekkkaeewllnnvieetaskLvearKsKVkaL 108
                  +++ k k ++  +++   + +++e + +r +  rk+ e+pee++ +++ V+  rh    ekk ++e  + + +++t++ L+ + + KV+ L
   CDO73162.1 490 ERPSKTKTKRPDSSA---TDEEDESRPVRVTVARKKGETPEEKKARKQAVKAeRHARRMEKKATKE-SFSKEVKRTVQSLTDKERMKVQKL 576
                  455555655555333...344448899999999999999999999999**999***9999999999.8999*****************976 PP

>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   6.6e+03      24      37 ..     491     504 ..     481     516 .. 0.50
   2 ?    7.0   5.9    0.0012         7       8      56 ..     515     566 ..     508     571 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  Syntaxin-18_N  24 ekeakkrkkkrlkk 37 
                    +++++k+k++ ++ 
     CDO73162.1 491 RPSKTKTKRPDSSA 504
                    33322222222222 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0012
  Syntaxin-18_N   8 kasVktvk..a.sssskseekeakkrkkkrlkkskekdeFikeAkeilkhIt 56 
                    + +V+ +k  + ++++++++  +++r+++r++k+++k++F+ke k+ ++++t
     CDO73162.1 515 RVTVARKKgeTpEEKKARKQAVKAERHARRMEKKATKESFSKEVKRTVQSLT 566
                    66788888753677788888888999*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1457  (0.081265); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 3522.86
//
Query:       CDO73163.1  [L=1844]
Description: hypothetical protein BN946_scf185007.g218 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-59  196.7   0.0    3.4e-20   71.9   0.1    3.7  3  Bromodomain     Bromodomain
    1.1e-05   25.1   0.0    1.8e-05   24.4   0.0    1.3  1  Peptidase_M1    Peptidase family M1 domain
    0.00075   19.7   0.1       0.11   12.6   0.0    2.4  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
       0.89   10.0   7.3         16    6.0   0.0    4.5  6  HEAT_2          HEAT repeats


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   7.6e-24   3.4e-20       1      80 [.    1222    1303 ..    1222    1307 .. 0.95
   2 !   67.7   0.0   1.6e-22   7.1e-19       1      82 [.    1611    1694 ..    1611    1696 .. 0.96
   3 !   53.0   0.0   5.9e-18   2.7e-14       2      82 ..    1722    1806 ..    1721    1808 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 7.6e-24
                   HHHHHHHBHTTTCGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHH CS
  Bromodomain    1 lekilsellehklaepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviye 80  
                   ++++l+++ ++k a+ Fl+pv   ++  p+y+++ik P+dLst+ +kles++Yk   +fead++l+++Na++yn +gs  + 
   CDO73163.1 1222 CRTALKKVQTNKHAALFLQPVdpVRDRAPNYFDIIKSPMDLSTMSAKLESGQYKDRFAFEADFRLMMNNAKTYNMPGSFAHN 1303
                   8999*****************999999**************************************************98766 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 1.6e-22
                   HHHHHHHBHTTTCGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain    1 lekilsellehklaepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82  
                   +++il++l + ++a +Fl+pv    + +p y++ ik+P+d+ tI +kl+++kY++++df  d++l+f+N+r +n++++ +  +a
   CDO73163.1 1611 CREILKTLSRVPEAPIFLRPVdpVLDGCPTYFDEIKEPMDFGTIGNKLNEGKYSTMEDFARDVELVFQNCRIFNPPTTYPVMCA 1694
                   99*******************888899*************************************************99888777 PP

  == domain 3  score: 53.0 bits;  conditional E-value: 5.9e-18
                   HHHHHHBHTTTCGGGGCSTT-GCC..STTHHHH...SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain    2 ekilsellehklaepFlepvdpee..fpdyyavi..kkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82  
                   + ++++ll+++l+ +F+epvdp     p y++vi  k   dL+tI+ kl+  kY+s++ feadl l+++Na+++ng +s++ +la
   CDO73163.1 1722 QGVMKTLLNDPLSWVFREPVDPVAlgIPTYFDVIpkKDARDLKTIQHKLNADKYDSVESFEADLDLMIHNAITFNGADSEVGKLA 1806
                   67899***************6665227*******554558****************************************99887 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.9e-09   1.8e-05      10     185 ..     321     489 ..     313     531 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.9e-09
                   HHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHHHH CS
  Peptidase_M1  10 lefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyleyli 106
                   ++f+  +f+ +Yp+  ++lv++++ ++       l +++  +l  d    ++++  ++ +   H la qW+G  +  k W+d wL  G+  y++ l+
    CDO73163.1 321 MSFYVTEFG-SYPFGSYKLVFVEELPTQRFDAATLSLITVDMLHGD---DAIDQVFEARHSLGHALACQWIGVNIQQKMWSDTWLVNGLGLYITGLF 413
                   555555554.7*********************************99...56666677788899********************************** PP

                   HHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSS.GG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHH CS
  Peptidase_M1 107 ldklepewevseqllleeveealsedaldeshpit.qevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksY 185
                   l k+++ +e++ +l  +++e++++ d  ++    + q++e p+  + +F +    K   +l+ l + lg++    gl+++
    CDO73163.1 414 LRKMFGMNEYRYRL-KKDMERVVELDNGAMPPICQpQTLEPPDAANLAFIN---LKAPLVLHILDRRLGKSGTSLGLSRV 489
                   ******77766666.667777777776555433333444444444444433...46666666666666666666666555 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0081        36      19      61 ..      19      56 ..       6      87 .. 0.75
   2 !   12.6   0.0   2.5e-05      0.11      79     150 ..     137     208 ..     110     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0081
                    EEEEEEEEEES.S-ECEEEEEESSEEEECEEEEECTTCTCEEEE CS
  Peptidase_M1_N 19 kGsvtitlqlk.eatseivldakdlkiksvslsaevksesvkid 61
                    +G  titl+++ ++ ++i+l+a++ +++sv++       s  +d
      CDO73163.1 19 QGYTTITLNPTsKDLKTIHLHARQCDVHSVTV------GSFAAD 56
                    7999*******999*************66554......444444 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.5e-05
                     EEETTCEEEEEEEEEEE-BSSSSEEE....EEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEE CS
  Peptidase_M1_N  79 slqqtskytLeieyegelndklaGly....kstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikap 150
                     ++ + ++++++i+y+   +++  G++    +  Y++     +v++T   + +AR ++PC+D+   K  ++++  +p
      CDO73163.1 137 PVTEYKQIEVTITYSL--KNPADGVQfvlpSDAYPTR--VPHVYTTPSSPDAARCWVPCIDNLWEKCAWDFEFVVP 208
                     4445778889999966..********99976667665..789*******************977777777766665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.9         4   1.8e+04      47      55 ..     632     640 ..     622     649 .. 0.56
   2 ?    6.0   0.0    0.0035        16       4      60 ..     714     772 ..     713     778 .. 0.85
   3 ?    0.4   0.0      0.19   8.6e+02      13      42 ..     818     849 ..     814     854 .. 0.80
   4 ?   -3.4   0.0       2.9   1.3e+04      58      76 ..     897     914 ..     893     918 .. 0.72
   5 ?    3.7   0.0     0.018        80      46      86 ..     965    1007 ..     953    1031 .. 0.70
   6 ?   -3.2   0.0       2.6   1.2e+04      32      49 ..    1069    1088 ..    1053    1092 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
      HEAT_2  47 vRraaaeaL 55 
                  R+aaa+a+
  CDO73163.1 632 ARQAAAQAA 640
                 344444444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0035
      HEAT_2   4 LlqalendpdpevrraairaLgrignpealpaLve.ll.ededpavRraaaeaLgaigd 60 
                 ++++l++d d   +++ai++L +  n  +  +L++ +l ++   ++R +aa aL  +++
  CDO73163.1 714 WVSQLQRDRDVVAQYEAIEVLSKTPNAIISSTLTKtVLvTNYFYRIRCEAAAALITCAT 772
                 578999********************999999999544688999********9976665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.19
      HEAT_2  13 dpevrraairaLg..rignpealpaLvelled 42 
                 ++ vr+a++ra+   r+ n ++ p ++++l d
  CDO73163.1 818 EYFVRKAILRAISrvRFENGKTPPVIRQFLVD 849
                 56799999999997777788888888888876 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.9
      HEAT_2  58 igdpealpaLkellddddd 76 
                 ++dp+++++Lk++l++  d
  CDO73163.1 897 VQDPQDAELLKKALAE-VD 914
                 5689999999999975.44 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.018
      HEAT_2   46 avRraaaeaL..gaigdpealpaLkellddddddvvReaAaea 86  
                   vR+aa ++L  g+   p+  +  ++ +++d+++++R+ +a++
  CDO73163.1  965 QVRMAAFDYLflGKWYVPKIMRYVLAVMANDPSRIIRRHVARN 1007
                  5777777766557777777777777777777777777766554 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 2.6
      HEAT_2   32 alpaLvell..ededpavRr 49  
                  +++ L +++   d+d++vR+
  CDO73163.1 1069 IREFLMPIAlaPDTDSEVRW 1088
                  44455443323566666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 11262.54
//
Query:       CDO73164.1  [L=987]
Description: hypothetical protein BN946_scf185007.g219 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     5e-217  721.9   0.0   6.6e-217  721.5   0.0    1.1  1  Het-C     Heterokaryon incompatibility protein Het-C
  ------ inclusion threshold ------
       0.25   10.5   0.0       0.37    9.9   0.0    1.2  1  Cnd3      Nuclear condensing complex subunits, C-term domain


Domain annotation for each model (and alignments):
>> Het-C  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  721.5   0.0  7.4e-221  6.6e-217       2     560 ..      11     572 ..      10     573 .. 0.95

  Alignments for each domain:
  == domain 1  score: 721.5 bits;  conditional E-value: 7.4e-221
       Het-C   2 lvlalllvllaskaaafGaGniasiskvegknwRhGDiedvlktlallkg.........................kkftkldvkrvYfGnWLrDysqav 75 
                 lvl+++lvll+++++afGaG+i+++++++gk++RhGDied+l++la+++g                          kf+k dvkrvYfGnWLrDysq++
  CDO73164.1  11 LVLTVVLVLLPTETYAFGAGDIPDFAYLNGKAFRHGDIEDILTELAKTAGhasggggllgsiaqsvlgaavggvgAKFSKEDVKRVYFGNWLRDYSQCM 109
                 78999******************************************9999999********************************************* PP

       Het-C  76 DvgtlkkvsaetirilvwvlsflafGyateefevteeRLgvYrpeehiDnPkgYadne.dareydrrLRgpvdereleidpetGmknYianeeggwats 173
                 D+++l+k+sa+t+ ++v+vl+fl+fG+ateefevt++RLgvY p+ehiDnPkgYa++e dar+++++LR+pv+++eleid++tGmknY+a+e+ gw+ts
  CDO73164.1 110 DIAGLSKLSADTLVLIVSVLGFLTFGFATEEFEVTADRLGVYLPVEHIDNPKGYAEKEgDARQFHPKLRPPVNPEELEIDERTGMKNYMATENRGWDTS 208
                 ********************************************************999**************************************** PP

       Het-C 174 agyvreslarsielgrlytsgskkkkgkeedllealRllGqalhtleDfaahsnyvelaLrelgekevfphvGkntkiklegkkvyPlvtGtfGgvDfl 272
                 ++++r+ ++ +ie+gr+  +       + +dl+ea+RllG++lht+eD+ ahsn++elaLr++g+++vf+hvG+n+ i++   +  PlvtGtfGg+Dfl
  CDO73164.1 209 TALIRRVFRSCIEHGRRA-K-----GCEGADLWEAYRLLGTGLHTMEDLLAHSNWCELALRKMGYNDVFCHVGDNVLINTPNGQTHPLVTGTFGGADFL 301
                 *****************5.4.....45579**************************************************9999*************** PP

       Het-C 273 hsvlGeasDkltqsevdeldaaleeaekssssssksalksllsklp...gtgddlaeeaeelkakseaqeaenasaseskanavpgvspnfdpeevakk 368
                 hs+lGea+D+l+q++v +l++++++a+++s  +s  +l +ll+klp   +  d+++++a++++++++a++ +                +n+ p ev ++
  CDO73164.1 302 HSLLGEATDHLSQASVVDLSKKMDDAQSDS--NSFGNLSALLKKLPiggSGADSKMDQASSMQEQAKAYRFDP---------------NNVAPPEVREQ 383
                 **************************9988..799***********543223334445555555544443333...............3567899**** PP

       Het-C 369 iypilefrDkvvksiseaiekipglekliekisetltvfvlsllaPfvrPiikqvskelkegsseviessakeqfevfedpkctdPthslLskDhfsni 467
                 ++++l++rD++ k+i e+ie ipgl++li+ ++++l++ v+++laP++ Pi+kqv+++l egs++vi+++  +q++vf++p+++dP+hslLskDhf+ i
  CDO73164.1 384 LWQLLKWRDSIYKDIIEKIELIPGLSDLIDGLTNALNAVVYTILAPYISPILKQVTDVLMEGSKAVIDTE--DQYQVFDNPDASDPSHSLLSKDHFALI 480
                 ********************************************************************98..9************************** PP

       Het-C 468 LnepaGkvaaaivkyvvprvleawedeevdvdevlddvlevfhhPalrdeeseiqremfetvekWveeksdeeeelkelLssesvkegknhke 560
                 LnepaGk+a  +v+  v+ ++ aw +++v++d+v+d++le+fhhP + + +s iq+emf+t+++Wv++ ++ ee + ++Ls+esv++g+n+++
  CDO73164.1 481 LNEPAGKIALVVVRNSVKLLVDAWFNDNVNPDQVIDQILEAFHHPWYATGRSRIQQEMFQTMQDWVNSLENVEE-TMQALSKESVRAGTNKRQ 572
                 *********************************************************************87765.999************986 PP

>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   4.2e-05      0.37     158     220 ..     496     559 ..     434     579 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHH-GGGTT-HHHHHHHHHH.HHHHHCC-HHHHHHHHHHHHHHHHHHHHHCH--... CS
        Cnd3 158 lLsrLvllyFnpeteenqrLrQcLsvf.fpvYafsspknqellaeiflptlrtllnapeespla 220
                  ++ Lv ++Fn + + +q + Q+L  f  p Ya  + + q+ + + + + +++l n  e+++  
  CDO73164.1 496 SVKLLVDAWFNDNVNPDQVIDQILEAFhHPWYATGRSRIQQEMFQTMQDWVNSLENVEETMQAL 559
                 4899********************8873699******999999999999999887777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 6511.53
//
Query:       CDO73165.1  [L=401]
Description: hypothetical protein BN946_scf185007.g220 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2939.45
//
Query:       CDO73166.1  [L=211]
Description: hypothetical protein BN946_scf185007.g221 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0033   17.9   0.1      0.027   14.9   0.0    2.2  2  Med11     Mediator complex protein


Domain annotation for each model (and alignments):
>> Med11  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.06   1.1e+03      67      77 ..      33      43 ..      26      55 .. 0.80
   2 !   14.9   0.0   1.5e-06     0.027      12      63 ..      62     115 ..      61     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.06
       Med11 67 rrqIyaLeeag 77
                 rqIyaL e+ 
  CDO73166.1 33 ARQIYALGEVE 43
                69*****9965 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-06
       Med11  12 kdIvslLesasealkaLskpp..eqepaseseeaqkeafkaatstffstLssvd 63 
                 +dI+ lL++a++ +  Ls p+    e +  +  +++e+f + ++++f+ L++  
  CDO73166.1  62 QDISRLLSLAAQSMALLSLPQtdGPEDDLPQGAERSEKFVDVANEYFERLDNTL 115
                 89***************99886656666778999***************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1506.76
//
Query:       CDO73167.1  [L=111]
Description: hypothetical protein BN946_scf185007.g222 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-22   78.3   4.7    4.3e-22   78.3   4.7    1.4  1  TBCA      Tubulin binding cofactor A


Domain annotation for each model (and alignments):
>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   4.7   2.4e-26   4.3e-22       1      84 [.      11      96 ..      11     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.4e-26
        TBCA  1 LkIktgvvkRlvKEeasYekEleeqearleklkadgdedeydlkkqeevleetkamipdlkkrlekavekLeelleee...eeleet 84
                LkIktg+ kRl+KE+ +Y+kE+e+ + +l++  ad++e e+d+k+ +++lee+ +mi d+ +rl + v++ ++l+ ++   +el+e 
  CDO73167.1 11 LKIKTGSAKRLYKEHRLYQKEAEDLKRKLDQHIADNAE-EWDIKNTRRMLEESGKMITDSATRLGAVVQEIRDLVVAAeqnPELAED 96
                8**********************************966.***********************************9999455445454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1263  (0.0704445); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 831.20
//
Query:       CDO73168.1  [L=310]
Description: hypothetical protein BN946_scf185007.g223 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-09   36.9   2.9    2.6e-09   36.9   2.9    2.0  2  HLH            Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.15   12.7   5.1        1.1   10.0   2.3    2.4  2  Ribosomal_60s  60s Acidic ribosomal protein
       0.31   11.1   6.2       0.42   10.7   6.2    1.2  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.38   2.3e+03      29      40 ..     158     169 ..     136     169 .. 0.70
   2 !   36.9   2.9   4.4e-13   2.6e-09       2      53 .]     198     247 ..     197     247 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.38
                 CSTTSS-STHHH CS
         HLH  29 slppskKlsKae 40 
                 +++++kK sKa+
  CDO73168.1 158 ARQAQKKRSKAS 169
                 567788999985 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 4.4e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   2 raahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhLq 53 
                 r+ + e E+rRRd++++++ +L+e lP   +++K sK++ L +A+ +I++L+
  CDO73168.1 198 RRQRIESEQRRRDELRDGYRRLKEALP--VSNQKSSKVSLLDRATTHIRYLE 247
                 5677899********************..7********************96 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.024   1.4e+02      54      82 ..     151     179 ..     122     181 .. 0.61
   2 ?   10.0   2.3   0.00018       1.1      27      66 ..     262     299 ..     236     306 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.024
                    XXXXXXXXXXXXXXXXXXXXXX.XX--SS CS
  Ribosomal_60s  54 aaaaaaaaaaaaaeekkkeeeeeEeeddd 82 
                    aa +  +a +a+++  k+  e + ++ddd
     CDO73168.1 151 AAISRSSARQAQKKRSKASDEFASDDDDD 179
                    33333333333333333333333345555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  27 vkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaa 66 
                    ++  + + ++e+l+ g+a   ++ aaaa+a+aaaa a+++
     CDO73168.1 262 AETAHLRHVNEALMLGTAE--QRHAAAASAVAAAAHAQQQ 299
                    3334445566666666666..7777777777777766654 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.2     7e-05      0.42      65     142 ..     197     273 ..     155     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7e-05
     UPF0242  65 lekskleekeaklteldeglktkeealeelqeeeeeLkee...........ldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                 +  + +e++++   el++g++  +eal                        ld  ++ ++ l+  +qqLq +l+++ ++ ++l+   e+
  CDO73168.1 197 IRRQRIESEQRRRDELRDGYRRLKEAL------------PvsnqksskvslLDRATTHIRYLEMTQQQLQTRLQQAEAETAHLRHVNEA 273
                 234445555555555555555555555............0555555555559***********************99999988876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1805  (0.100675); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2408.22
//
Query:       CDO73169.1  [L=217]
Description: hypothetical protein BN946_scf185007.g224 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.026   14.7   0.1      0.046   13.8   0.1    1.4  1  MPC            Mitochondrial pyruvate carriers
       0.14   10.0   0.3       0.18    9.6   0.3    1.1  1  Tenui_PVC2     Tenuivirus PVC2 protein
       0.28   10.8   2.9       0.21   11.2   1.0    1.7  2  Baculo_11_kDa  Baculovirus 11 kDa family
       0.42   10.6   0.1       0.42   10.6   0.1    2.4  3  Syndecan       Syndecan domain


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     1e-05     0.046      47      96 ..      67     116 ..      59     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
         MPC  47 laLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskk 96 
                 laL   + iwtr +  i P  +++ av +++++v+l ++   ++++ +++
  CDO73169.1  67 LALSNRSYIWTRVCKFIWPFVIVICAVRAIIMIVELQRGKDKIQWECENG 116
                 689999*******************************9999999988776 PP

>> Tenui_PVC2  Tenuivirus PVC2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   4.1e-05      0.18     383     450 ..      77     144 ..      70     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.1e-05
  Tenui_PVC2 383 tdvykirfnsvrvmclsvplyytnsfkrvisreewkcfegegcrtdgthsiwgestslsfdycvtdfh 450
                 t v k  +  v v+c    +     ++r   + +w+c +g    td + + +g s+s+   +c t f 
  CDO73169.1  77 TRVCKFIWPFVIVICAVRAIIMIVELQRGKDKIQWECENGGQLWTDSAEAGYGGSASFPTGFCTTGFS 144
                 6677888888999**999999********************************************996 PP

>> Baculo_11_kDa  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   4.6e-05      0.21      25      50 ..      75     100 ..      58     103 .. 0.80
   2 ?   -2.1   0.0      0.67     3e+03      52      66 ..     164     178 ..     146     194 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
  Baculo_11_kDa  25 lvsrNrsflrdFvLvicglvvfvviv 50 
                    + +r  +f+  Fv+vic++  +++iv
     CDO73169.1  75 IWTRVCKFIWPFVIVICAVRAIIMIV 100
                    56777899****************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.67
  Baculo_11_kDa  52 filLlvvilknaeae 66 
                    ++ L+   +k  e  
     CDO73169.1 164 MFFLVWRFQKRLEHY 178
                    233334444444444 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       1.7   7.6e+03      11      24 ..      53      66 ..      47      69 .. 0.47
   2 ?   -0.7   0.1      0.31   1.4e+03      18      31 ..      87     100 ..      85     110 .. 0.70
   3 ?   10.6   0.1   9.4e-05      0.42       7      37 ..     145     174 ..     142     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
    Syndecan 11 aviggvvvgllfai 24
                ++  gv v+  + i
  CDO73169.1 53 GIGIGVAVAAALSI 66
                44344444444333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
    Syndecan  18 vgllfaillvlflv 31 
                 v++++a+  ++++v
  CDO73169.1  87 VIVICAVRAIIMIV 100
                 66778887777777 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 9.4e-05
    Syndecan   7 evlaaviggvvvgllfaillvlflvYRmrKK 37 
                  ++aa i+g +v l f + +  flv+R +K+
  CDO73169.1 145 SIYAAFIVGLLVDLAFQMYM-FFLVWRFQKR 174
                 699***********999775.699****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1797.78
//
Query:       CDO73170.1  [L=335]
Description: hypothetical protein BN946_scf185007.g225 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   41.1   1.5    1.2e-10   41.1   1.5    1.7  2  HLH             Helix-loop-helix DNA-binding domain
     0.0026   17.7   0.1     0.0037   17.2   0.1    1.4  1  FTA4            Kinetochore complex Fta4 of Sim4 subunit, or 
  ------ inclusion threshold ------
      0.014   15.2   2.2      0.026   14.4   2.2    1.4  1  Shugoshin_N     Shugoshin N-terminal coiled-coil region
      0.034   14.2   0.4        0.1   12.7   0.4    1.8  1  DUF1192         Protein of unknown function (DUF1192)
      0.056   13.5   1.2      0.056   13.5   1.2    2.6  3  TolA_bind_tri   TolA binding protein trimerisation
       0.11   12.5   4.8       0.17   11.9   4.8    1.2  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.22   11.4   3.9       0.15   11.9   1.7    1.9  2  GIT_CC          GIT coiled-coil Rho guanine nucleotide exchan
       0.23   12.0   4.1       0.45   11.0   4.1    1.5  1  APG6_N          Apg6 coiled-coil region
       0.25   11.1   7.6       0.12   12.2   1.1    2.3  2  DivIC           Septum formation initiator
       0.33   10.2   4.9       0.99    8.7   4.9    1.9  1  DUF3450         Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   1.5   6.8e-14   1.2e-10       2      52 ..     201     249 ..     200     250 .. 0.94
   2 ?   -3.0   0.1       4.3   7.6e+03       4      20 ..     261     277 ..     258     278 .. 0.69

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6.8e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   2 raahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhL 52 
                 r+ + e+E+rRRd++++++++L++ lP   +++K sK++ Le+A+++I  L
  CDO73170.1 201 RRQRIEAEQRRRDELRDGYARLKDVLP--VSNQKSSKVSLLERATNHITNL 249
                 677889*********************..7******************988 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsal 20 
                 a  e+E  R + +N+++
  CDO73170.1 261 ASLEAEVARLRALNEKI 277
                 55567777888899887 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.1e-06    0.0037     101     199 ..     187     278 ..      55     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
        FTA4 101 elIkeLPesweveekeaeeepleallerYaelr...arLielserrqqlqarlarlrklkallepflgsedpqesvqenlvtrdgeleaElermRvLla 196
                 ++ ++L ++++   + ++++ +ea+++r +elr   arL+++    +q+ ++++ l++  + ++++       e+++++l  r   leaE++r+R L +
  CDO73170.1 187 NMAESLANTRK---EATRRQRIEAEQRRRDELRdgyARLKDVLPVSNQKSSKVSLLERATNHITNL-------EKTNRQLSQRLASLEAEVARLRALNE 275
                 44444444444...4555566788889999998222455555555566666666666666666666.......678889999999************** PP

        FTA4 197 rva 199
                 +++
  CDO73170.1 276 KIS 278
                 *97 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.2   1.5e-05     0.026       9      38 ..     246     275 ..     240     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
  Shugoshin_N   9 NreLAKsNsalslkirelekevseLlsENl 38 
                  +++L K+N +ls+++ +le+ev++L++ N 
   CDO73170.1 246 ITNLEKTNRQLSQRLASLEAEVARLRALNE 275
                  67889*********************9995 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   5.6e-05       0.1      24      44 ..     255     275 ..     253     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
     DUF1192  24 ELeerIalLeaEIaRleaaia 44 
                  L +r a LeaE+aRl+a  +
  CDO73170.1 255 QLSQRLASLEAEVARLRALNE 275
                 699**************9765 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       2.1   3.7e+03      25      38 ..     203     216 ..     190     224 .. 0.64
   2 ?   13.5   1.2   3.1e-05     0.056       5      44 ..     235     277 ..     231     280 .. 0.85
   3 ?   -2.5   0.8       3.2   5.8e+03      41      50 ..     306     315 ..     304     319 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
  TolA_bind_tri  25 qqlealqqelreLR 38 
                    q++ea q+  +eLR
     CDO73170.1 203 QRIEAEQRRRDELR 216
                    55566666666665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.1e-05
  TolA_bind_tri   5 rvarLErilears...qlllelqqqlealqqelreLRGqiEel 44 
                    +v+ LEr+ ++ +   +++ +l q+l +l++e+++LR  +E+ 
     CDO73170.1 235 KVSLLERATNHITnleKTNRQLSQRLASLEAEVARLRALNEKI 277
                    67788888877666669999*******************9985 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.2
  TolA_bind_tri  41 iEelqyqleq 50 
                     ++ q+ql +
     CDO73170.1 306 QQQSQHQLTS 315
                    4666666665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.8   9.2e-05      0.17       3      85 ..     196     277 ..     194     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.2e-05
  CENP-F_leu_zip   3 kkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeL 85 
                     +k+   +++  + +r+ d L+d   +L+  l  s+++ +kv l  E + + + +l++  ++l+++l  le++++ lr  +e++
      CDO73170.1 196 RKEATRRQRIEAEQRRRDELRDGYARLKDVLPVSNQKSSKVSL-LERATNHITNLEKTNRQLSQRLASLEAEVARLRALNEKI 277
                     5666677788899**********************99999877.89******************************9655554 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.9   1.1e+04      28      38 ..      60      70 ..      59      74 .. 0.70
   2 ?   11.9   1.7   8.5e-05      0.15      28      62 ..     242     276 ..     214     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.9
      GIT_CC 28 seakiqqLlkv 38
                se+ +qq ++ 
  CDO73170.1 60 SESDLQQAMQY 70
                77888887775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.5e-05
      GIT_CC  28 seakiqqLlkvNtslsdelrlLQskvqkLqaeNaq 62 
                 +   i++L k N +ls+ l+ L  +v +L a N++
  CDO73170.1 242 ATNHITNLEKTNRQLSQRLASLEAEVARLRALNEK 276
                 4567889**********************998877 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.1   0.00025      0.45      16      84 ..     203     274 ..     187     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeek...qdeeleeleeeleklekeeeelleeLkelekereeleael 84 
                 +++e+ ++ rd++++  ++lk+  + +++   + + le++ + + +lek+ ++l + L+ le+e ++l+a  
  CDO73170.1 203 QRIEAEQRRRDELRDGYARLKDVLPVSNQkssKVSLLERATNHITNLEKTNRQLSQRLASLEAEVARLRALN 274
                 566777777777777777777665555543334455566666688899999999999999999988888754 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.7     0.087   1.6e+02      29      57 ..     194     222 ..     188     225 .. 0.70
   2 ?   12.2   1.1   6.7e-05      0.12      24      51 ..     244     271 ..     234     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.087
                 HHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS
       DivIC  29 lqaelaklkaeneeLeaevkdLksdedyi 57 
                  +++ a+ ++++e+ +++ ++L+++++++
  CDO73170.1 194 NTRKEATRRQRIEAEQRRRDELRDGYARL 222
                 56677777778888888888887777665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  24 qeiaalqaelaklkaeneeLeaevkdLk 51 
                 + i+ l++++ +l+++ ++Leaev++L+
  CDO73170.1 244 NHITNLEKTNRQLSQRLASLEAEVARLR 271
                 56899*********************96 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.9   0.00055      0.99      43      92 ..     229     278 ..     183     284 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00055
     DUF3450  43 ddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeie 92 
                 +++k++ ++ ++++++ + +le+ n+ql++ +as+e+e+a+l+   e+i+
  CDO73170.1 229 SNQKSSKVSLLERATNHITNLEKTNRQLSQRLASLEAEVARLRALNEKIS 278
                 6789999999999***************************9998777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 2470.32
//
Query:       CDO73171.1  [L=283]
Description: hypothetical protein BN946_scf185007.g226 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-16   58.5   0.0    6.7e-16   58.2   0.0    1.1  1  Man-6-P_recep  Mannose-6-phosphate receptor
      2e-09   37.7   0.0    5.6e-05   23.2   0.0    2.1  2  CIMR           Cation-independent mannose-6-phosphate recepto
    2.5e-07   30.8   0.0    6.6e-07   29.5   0.0    1.7  1  ATG27          Autophagy-related protein 27


Domain annotation for each model (and alignments):
>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.1e-19   6.7e-16      48     207 ..      19     185 ..       5     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.1e-19
  Man-6-P_recep  48 ytyklrvCreveesa......edagliqidkkdkketviGrinetqvldGsdWilliykggdeyeshck...kekrkalimisCnkkvladeltlv 134
                     +y+l+vC+ v+++       +   +    ++ + +  +G +n+t ++   + ++   +g+     +c+   ++   +++  +C+ ++ ++e +l+
     CDO73171.1  19 KDYILNVCKPVSQEVwapkvdKPEDVAAFTHRAHGDFSLGDVNRTVAVRDGNPVITLTEGT-----RCStegSQTGSTVLRFICDTSAGTGEPKLI 109
                    579999**9999876666665335566667777778999******9887666665544554.....566221334678999**************9 PP

  Man-6-P_recep 135 vee.rekeedcfylfeldssvaCpkeeskl..svGsillivllslvavyligGflyqrlvvgakGleqiPnyafWq 207
                     +   ++ + c ++ e  s++aCp+ e  l   + ++l i+++ l a+y+igG ly+r v++ +G+eqiP+++f++
     CDO73171.1 110 ATLpPDEDNACSFFIEWRSEMACPTAEGGLfgRIIAVLAIITAVLFALYIIGGTLYNRYVLELQGFEQIPRFSFFS 185
                    886157788999**************9999333667788999999****************************985 PP

>> CIMR  Cation-independent mannose-6-phosphate receptor repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.1e-05      0.12      85     142 ..      19      81 ..       6      82 .. 0.85
   2 !   23.2   0.0   9.4e-09   5.6e-05       5      47 ..      90     136 ..      86     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
        CIMR  85 khfyinvCk...peakiegCp..saaavClvdkdksvNLGkvqsspqaedgsiqlsYvnGdkc 142
                 k + +nvCk   +e+ ++  +  +++a+ +   +  + LG v+ +  + dg+ +++ ++G++c
  CDO73171.1  19 KDYILNVCKpvsQEVWAPKVDkpEDVAAFTHRAHGDFSLGDVNRTVAVRDGNPVITLTEGTRC 81 
                 78*******8887777777654478888888889****************************9 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 9.4e-09
        CIMR   5 atvirFvCnetaledapvflkedi....gdcsylFewetalACveke 47 
                 +tv+rF+C+ +a+ ++p++ +  +    + cs++ ew+ ++AC+  e
  CDO73171.1  90 STVLRFICDTSAGTGEPKLIATLPpdedNACSFFIEWRSEMACPTAE 136
                 799****************99888887789*************9654 PP

>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.1e-10   6.6e-07      55     255 ..      21     203 ..       3     212 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.1e-10
       ATG27  55 ytldiCeplkkkkdvkkedqCpkgtrvCgitrvikkdekde...itqvipiggksldpkvtrlkesdekeglrlelkggkygkkkqkaiieflCd.... 146
                 y l++C+p++++   +   + +k ++v ++t+  + d   +   + + + +  ++ +p +t       +eg r + +g+    ++ +++++f+Cd    
  CDO73171.1  21 YILNVCKPVSQEVWAP---KVDKPEDVAAFTHRAHGDF--SlgdVNRTVAV--RDGNPVITL------TEGTRCSTEGS----QTGSTVLRFICDtsag 102
                 6666666665553332...3344455555555555421..11123333333..333333322......35555555555....7779*******94444 PP

       ATG27 147 ..ekslkfksydeeeeeekdvlrlewktkyACekaekdkkdsskkkeksgwGfFtwlfiilflataaYlifgswlNynryGargwDllphgdt..irdl 241
                   e +l+  +  ++ e++++   +ew+++ AC +ae+   +              +l ii  +++a+Y+i+g  +N  +   +g + +p   +  ++d 
  CDO73171.1 103 tgEPKLI-ATLPPD-EDNACSFFIEWRSEMACPTAEGGLFG----------RIIAVLAIITAVLFALYIIGGTLYNRYVLELQGFEQIPRFSFfsFTDT 189
                 3322232.333333.799***************87443332..........24679999999****************************666226899 PP

       ATG27 242 PyllkDvvrkvlgt 255
                  ++++D + +v+ +
  CDO73171.1 190 VEFFRDCLARVKHR 203
                 9*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2102.77
//
Query:       CDO73172.1  [L=474]
Description: hypothetical protein BN946_scf185007.g227 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-109  365.0   0.0   2.6e-109  364.5   0.0    1.1  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
      0.006   15.5   0.0      0.013   14.5   0.0    1.6  2  NiFeSe_Hases    Nickel-dependent hydrogenase
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.24   11.2   0.0    1.4  1  SoxZ            Sulphur oxidation protein SoxZ


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.5   0.0  4.4e-113  2.6e-109       1     249 [.     194     442 ..     194     444 .. 0.99

  Alignments for each domain:
  == domain 1  score: 364.5 bits;  conditional E-value: 4.4e-113
                     HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHT CS
  Complex1_49kDa   1 DlGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelg 95 
                     D+Galt+fl+ f+eRek+++++e+v+GaRl+a+y+r+GGva Dlp+glle+i ++++++++++de+e+++t nri+k+Rt g+gv+++++al+++
      CDO73172.1 194 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLEDIFKWATQFSSRVDEIEEVVTGNRIWKERTIGIGVVTAKQALDYS 288
                     9********************************************************************************************** PP

                     T-SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTTS---GGGGGT-HHHHHHHH CS
  Complex1_49kDa  96 ltGpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkvalpkkeevkksmealihhf 190
                     ++G++lR+sGv++D+Rk+ pY+ Yde++fd+p+g++gD+ydRyl+rv+E+r+Sl+Ii+q+l+k+p+g+++++d k a+p+++++k+sme+lihhf
      CDO73172.1 289 FSGVMLRGSGVPWDIRKVAPYDKYDEVEFDIPIGKNGDCYDRYLCRVQEFRESLRIINQCLNKMPTGAIKVDDYKLAPPPRASMKESMESLIHHF 383
                     *********************************************************************************************** PP

                     HHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTT CS
  Complex1_49kDa 191 klvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkg 249
                     kl++eg++vp+ge+y+a+EapkGe+gvyl+sdg+++pyr+kirap+f++l+  + +++ 
      CDO73172.1 384 KLFSEGYSVPPGETYSAIEAPKGEMGVYLISDGTNRPYRCKIRAPGFAHLAGADFMMRP 442
                     ***************************************************99999875 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.46   2.7e+03     168     200 ..      38      70 ..      26      78 .. 0.74
   2 !   14.5   0.0   2.1e-06     0.013       1      69 [.     119     187 ..     119     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.46
                   HHHHSSSSS--.EBTTBESSGBGSBSHHHHHHH CS
  NiFeSe_Hases 168 aifggknPhpqslvvGGvtcaidllnaerlaev 200
                     ++   P +++   GGv ++ dl ++e l+ +
    CDO73172.1  38 LALAQADPSAHAAQSGGVKSVFDLHTVEDLHGM 70 
                   5566667888899999**999999988888755 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.1e-06
                   --HHHHTTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases   1 RGlElilkgrdprdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdhivh 69 
                   RG E++++ ++  +a  + +R   V  ++  l+   ave+ l+i++p+ a+ ir+l    + + +h++ 
    CDO73172.1 119 RGTEKLIEYKTYIQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGEITRILNHLMA 187
                   99********************************************************99999999875 PP

>> SoxZ  Sulphur oxidation protein SoxZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.1e-05      0.24      21      59 ..      78     115 ..      74     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.1e-05
                 B-S--B-TT.S-B---B-EEEEEEEETTEEEEEE---SS CS
        SoxZ  21 etGlrkdkktgklipahfIqevevtlngkevleaelgia 59 
                 etG+rkd++  +   ah + ++ +++ng+evl+a+ +i+
  CDO73172.1  78 ETGTRKDAQ-LRHFTAHGVLRLILEMNGEEVLRADPHIG 115
                 8*******5.999*********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3067.66
//
Query:       CDO73173.1  [L=301]
Description: hypothetical protein BN946_scf185007.g228 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-59  201.6   0.0    1.8e-59  201.3   0.0    1.1  1  NIF3      NIF3 (NGG1p interacting factor 3)


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0     1e-63   1.8e-59       3     243 ..       8     266 ..       6     269 .. 0.90

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 1e-63
        NIF3   3 vevleelaplelaeswDnvGlqvgdpekevkkvllaldlteevleeAiekgadliithHPlifkplkrlteddykkrllkkliknnislysaHtnlDaa 101
                 ++++ ++apl+lae+wDn    v   ++++k++ll++dlt++v+eeA++  ++li+++HP+ifkpl+++t +++ +++l k++ ++is+y++Ht+lD++
  CDO73173.1   8 CKIMGRVAPLHLAEKWDNA-PYV---RENAKRILLTIDLTPAVVEEALSTPTSLIVSYHPPIFKPLSSITLSNPLQASLLKCAAAGISVYTPHTALDSV 102
                 78999**************.455...79*********************************************************************** PP

        NIF3 102 pgGvndwlakal..glekieplepskeek.keeeeglgrigeleepvsleelakklkkklglek..................vrva....gdldkkvkk 175
                  +G+ndwl+ ++   l++i    ++  +   e   g+gri++l++p++l+ l  +++++l+l++                  v+va    + + ++v++
  CDO73173.1 103 TDGLNDWLCTRVagPLRDINWTARYIGQAfPEDLGGVGRIVTLKQPMELKMLQFNIRTELELKHskiplnasstymphrdlaVQVAyakpERERTMVST 201
                 *********99966333333333333222466788***************************9999999999999*****9955556575599999*** PP

        NIF3 176 vaicaGsGaslieeakakgaDlliTGelkhhealdakekgiavidvgHyatErvflealaelLkeklk 243
                 +aicaGsG+s++      +aD++ TGe++hhe+l+a ++g +vi++gH++tEr+fl  la+ ++e ++
  CDO73173.1 202 IAICAGSGGSML---LGVDADVYFTGEMSHHEVLAAVQSGHNVILCGHTNTERGFLPWLAKDIEEFVQ 266
                 ************...999******************************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2034.60
//
Query:       CDO73174.1  [L=101]
Description: hypothetical protein BN946_scf185007.g229 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-19   69.0   0.0    4.2e-19   68.5   0.0    1.2  1  Glutaredoxin   Glutaredoxin
    0.00023   21.1   0.0    0.00037   20.5   0.0    1.3  1  Thioredoxin_3  Thioredoxin domain
      0.003   18.0   0.1     0.0061   17.0   0.1    1.5  1  Thioredoxin_2  Thioredoxin-like domain
     0.0033   17.8   0.1     0.0051   17.2   0.1    1.4  1  DUF836         Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
      0.047   14.1   0.0      0.063   13.7   0.0    1.2  1  GST_N_3        Glutathione S-transferase, N-terminal domain
      0.084   13.0   0.1        2.4    8.3   0.0    2.1  2  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.4e-22   4.2e-19       1      60 []      16      80 ..      16      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 1.4e-22
                  EEEEESTSSHHHHHHHHHHHHTT..GGEEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelg..vkfeeidvdkde...eireelkelsgvrtvPqvfidgkhv 60
                  + +f+k++CpyCk+ak+lL+++   v+ ++ ++d+ +   ei+++l e++g+rtvP++fi++khv
    CDO73174.1 16 IAIFSKSYCPYCKRAKALLTSKFpnVSTKILELDEIPegsEIQDYLTEKTGQRTVPNIFINQKHV 80
                  679****************776544999********9999************************8 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-07   0.00037       2      59 ..      15      79 ..      14      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
                   EEEEESSS.STTCHHHHHHHHHHCHCCTCEC....EEECCTTHHHH..HHCT-SSSSEEECTTCE CS
  Thioredoxin_3  2 eikvlgpg.CakCpklekavkeaaaekgika....evekvtdfeei..ekygVmsvPalvidgkv 59
                   +i +++++ C++C+++++++++  ++  +k+    e+ + +++++   ek g ++vP ++i+ k 
     CDO73174.1 15 KIAIFSKSyCPYCKRAKALLTSKFPNVSTKIleldEIPEGSEIQDYltEKTGQRTVPNIFINQKH 79
                   688987777**************999988888788888889999999999************886 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1     2e-06    0.0061       7      58 ..      14      53 ..       8      85 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2e-06
  Thioredoxin_2  7 pvlvvftdpdCpyCkklkk.elkelddvtvrvllfplkpsfepkavaiwcake 58
                     +++f+++ CpyCk+ k+  +++ ++v  ++l  +               +e
     CDO73174.1 14 NKIAIFSKSYCPYCKRAKAlLTSKFPNVSTKILELD-------------EIPE 53
                   6799************99944444455555544433.............3333 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.7e-06    0.0051       1      35 [.      15      49 ..      15      80 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEE CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviD 35
                k+ ++sk +C+ C++ak++L     + + ++++ D
  CDO73174.1 15 KIAIFSKSYCPYCKRAKALLTSKFPNVSTKILELD 49
                689*****************975444444444444 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.063       3      55 ..      20      78 ..      18      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                S-TTSHHHHHHHHHHHHH..T--...EEEE---TTTTHHHH.HHH-TT--SSEEETTS- CS
     GST_N_3  3 gfpaSpyarrvrlaLnek..glp...vevvevtpgehdeel.laknplgkvPvLeddge 55
                +  ++py++r++ +L+ k  +++    e+ e+++g+  + +  +k+++++vP + ++++
  CDO73174.1 20 SKSYCPYCKRAKALLTSKfpNVStkiLELDEIPEGSEIQDYlTEKTGQRTVPNIFINQK 78
                6779*********999983344444555677789999666637788******8866655 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0008       2.4      13      33 ..      12      32 ..       8      46 .. 0.85
   2 ?    3.1   0.0     0.031        93     134     152 ..      63      81 ..      50      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0008
                   -SEEEEEEE-TT-HHHHHHHH CS
  Thioredoxin_4 13 ApvtvieyedlrCphCakfee 33
                   A +++ +++   Cp+C++ + 
     CDO73174.1 12 AENKIAIFSKSYCPYCKRAKA 32
                   8899*************9876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.031
                    HHHT--SS-EEEETTEEE- CS
  Thioredoxin_4 134 kkagiestPtfiingekve 152
                    +k+g  ++P ++in++ v 
     CDO73174.1  63 EKTGQRTVPNIFINQKHVG 81 
                    788999*********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 700.45
//
Query:       CDO73175.1  [L=135]
Description: hypothetical protein BN946_scf185007.g230 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-10   38.9   1.5    5.3e-10   38.7   0.1    1.8  2  CSTF_C        Transcription termination and cleavage factor C
  ------ inclusion threshold ------
        2.6    8.3  10.9        0.3   11.3   0.9    2.2  2  Metal_resist  Heavy-metal resistance


Domain annotation for each model (and alignments):
>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.27   2.4e+03      22      27 ..      60      65 ..      59      67 .. 0.74
   2 !   38.7   0.1   5.9e-14   5.3e-10       3      36 ..      96     129 ..      94     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.27
      CSTF_C 22 aLPpdq 27
                aLPp q
  CDO73175.1 60 ALPPAQ 65
                788877 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 5.9e-14
      CSTF_C   3 qekaeLlqQVLqLseeqIaaLPpdqRrsImiLrq 36 
                 +e+++L+  V+q+s e I aLPp++R sI+ Lr+
  CDO73175.1  96 EEQKALILRVMQMSREEIYALPPTERDSIITLRN 129
                 69*******************************7 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   3.5     0.033   2.9e+02      15      47 ..      30      65 ..      26      68 .. 0.73
   2 ?   11.3   0.9   3.4e-05       0.3      20      60 ..      71     111 ..      66     117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.033
                  XXXXXXXXXXXXTTHHBH....HHHHHHHS-TTHHH CS
  Metal_resist 15 gaalrgpggpppggparg...raellraalgLpaeq 47
                  g+a++ p++++p++ ++    ++  ++   +Lp++q
    CDO73175.1 30 GPAYGTPPPTGPAPVPGYgpsPHTQPPPPHALPPAQ 65
                  556666666666654444899999999999999998 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.4e-05
                   XXXXXXXTTHHBH.HHHHHHHS-TTHHHHHHHHHHHHHHHH CS
  Metal_resist  20 gpggpppggpargraellraalgLpaeqraelraalrdhar 60 
                    +g+ppp+ ++ ++++l+ a +gLp+eq a   + ++  ++
    CDO73175.1  71 MQGPPPPAAAPPTGPRLPDAFAGLPEEQKALILRVMQMSRE 111
                   34444444444447***************998888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1071.54
//
Query:       CDO73176.1  [L=951]
Description: hypothetical protein BN946_scf185007.g231 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-99  331.8  10.6      1e-98  331.2  10.6    1.2  1  Adaptin_N        Adaptin N terminal region
      7e-61  203.9   0.0    1.9e-60  202.5   0.0    1.8  1  Coatomer_b_Cpla  Coatomer beta subunit appendage platform
    6.2e-54  181.7   0.1      2e-53  180.1   0.0    1.9  2  Coatamer_beta_C  Coatomer beta C-terminal region
    1.7e-08   34.8   2.1      0.029   14.8   0.0    5.3  5  HEAT_2           HEAT repeats
    8.8e-07   28.7   0.2       0.33   11.3   0.0    5.3  4  HEAT             HEAT repeat
    3.3e-06   27.2  10.3     0.0018   18.4   0.2    4.3  5  Cnd1             non-SMC mitotic condensation complex subunit
    1.5e-05   24.5   7.8     0.0049   16.3   1.2    3.6  3  DUF5578          Family of unknown function (DUF5578)
    0.00021   21.5   1.8        0.1   12.8   0.0    3.9  4  DUF5071          Domain of unknown function (DUF5071)
    0.00098   19.2   0.0     0.0034   17.5   0.0    2.0  1  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag
     0.0063   16.7   0.1       0.25   11.5   0.0    2.8  2  Gemini_V2        Geminivirus V2 protein
  ------ inclusion threshold ------
      0.027   13.3   0.0      0.051   12.4   0.0    1.3  1  MCRA             MCRA family
      0.031   14.4   3.6       0.61   10.2   0.0    3.2  3  ParcG            Parkin co-regulated protein
      0.051   13.3   0.1        4.9    6.8   0.0    3.2  3  DNA_alkylation   DNA alkylation repair enzyme
      0.058   13.6   3.1       0.32   11.2   0.0    3.3  3  RTP1_C1          Required for nuclear transport of RNA pol II
      0.088   13.2   0.3        0.4   11.0   0.3    2.2  1  Meis_PKNOX_N     N-terminal of Homeobox Meis and PKNOX1
      0.091   12.9   0.0        8.7    6.6   0.0    2.9  2  PAH              Paired amphipathic helix repeat
       0.16   12.3   5.6          4    7.9   0.0    4.6  5  RasGEF_N_2       Rapamycin-insensitive companion of mTOR RasG


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.2  10.6  9.4e-102     1e-98       4     469 ..      20     490 ..      17     519 .. 0.93

  Alignments for each domain:
  == domain 1  score: 331.2 bits;  conditional E-value: 9.4e-102
                 HCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCC.SS-CHHHHHHHHHHHHHCTTSCC.....HHCCCCHHHHHHCCSSSHHHH CS
   Adaptin_N   4 riqqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklva.skdfelKrlvYlylellaeesed.....lalLvtnslqkDlkdpnqlir 96 
                   +q+l+++l++   +de k+++++k+i   ++G++ + l++ ++  v+ s + +lK+++++y+e++++ +++     +++Lv+n++++Dl++pn++ir
  CDO73176.1  20 PTTQDLRNALQKG--SDEVKIDTLRKIIVATINGNPQPQLLMPIIQYVMpSRNKQLKKMLHFYWEVCPKYDDNgklkqEMILVVNAIRNDLQHPNEYIR 116
                 578**********..*********************************99*********************9999999********************* PP

                 HHHHHHHCCC-.-CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT..T-SSHHHHHHHHHHHHHHHCCCCCCCHHHHH CS
   Adaptin_N  97 glALrvLssir.vpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell..sdkdpgvvlaAvalleeikkndrlllkllpk 192
                 g +Lr+L +i+ + el+e l+p  +++l++r++yvrk+A+ a++ +y+  ++l+++  ++e+++ +  +++d  ++++A+  l ++   +    k++++
  CDO73176.1 117 GATLRFLQKISkEVELLEPLVPICRSCLEHRHSYVRKNAVFAVYSIYREFEHLIPD--APELIQTFlaAESDATCKRNAFVFLAHC-AMP----KAVEY 208
                 **********9788****************************************99..57666666699*****************.333....55777 PP

                 HHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCH CS
   Adaptin_N 193 lvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrlls.skdenlryvaLrt 290
                 +++ ++++  ++d++lq+ ii++++  +++e++ +  ++++  + +ll+ s+ aV +e++ ++++l ++++++++a+++++ l++ ++d+n+++++L++
  CDO73176.1 209 IMQVFDQI-PSMDEHLQMSIIEVIRLDCKHETSHK--ARYILLISELLNASSHAVKYEAAATLTSLTQNPAAVKAAASCYINLVQkESDNNVKLIVLDR 304
                 77777767.8*************************..78**********************************************9************* PP

                 HHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH......HHHHHHHHHHHHHHHSCCHHHHHHHHHH CS
   Adaptin_N 291 llkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded......fksklvkaIgrlaekfatdaewvldvll 383
                 l  + +k+ + +  l ++i  + ++ d+++r+ka+ ++l lv+++Nv+e+v  Lkk++++++d++      +++ l+++I+ +a+kf ++a++v+  l+
  CDO73176.1 305 LDALRSKHGHVLDPLIMDILQVLSSADIEVRRKAIGIVLSLVSSRNVEEVVLFLKKQLQKTQDQEfekapeYRQLLIQSIHVCAVKFSEVAASVVHALM 403
                 ********6666699*************************************************9********************************** PP

                 HHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT....HHHHHHCTTTTTTTSXHH CS
   Adaptin_N 384 ellslsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsnte.sasdllrslaekfvlesek 469
                 ++l ++++  + ++v+++r++++k+p+l++ i++kL++++ +i+s +++++++W+lGey+e++++++    +l + l e ++l+se+
  CDO73176.1 404 DFLGDTNNPSALDVVAFVREVVEKFPQLRQTICQKLIQTMPEIKSGKVYRGVLWILGEYAEHLQDIQeVFRQLRKVLGEIPILASEQ 490
                 *****************************************************************6656666666666666666664 PP

>> Coatomer_b_Cpla  Coatomer beta subunit appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   0.0   1.8e-63   1.9e-60       2     128 .]     814     940 ..     813     940 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 1.8e-63
  Coatomer_b_Cpla   2 rnvvilndikidimdyikpakiseeeFremWaefeWEnkiavktkltdlkeyleelvkktnmklltpeeeleeeaeflsanlyaksvfgedala 95 
                      +++vilndi+idimdyikpa ++e++Fr+mW+efeWEn+++v+t+++d +eyl++++k+tnm++ltpe +l+++++flsan+ya+s+fgedala
       CDO73176.1 814 EQCVILNDIHIDIMDYIKPAYCTEQQFRSMWTEFEWENRVNVTTTISDPREYLHHVMKATNMSCLTPEGALSGDCDFLSANMYARSLFGEDALA 907
                      58******************************************************************************************** PP

  Coatomer_b_Cpla  96 nvsiekeeegkisgvvRiRsktqgialslgdki 128
                      n+s+e++eeg+i+g+vRiRsktqgialslgd+i
       CDO73176.1 908 NLSVERTEEGTITGHVRIRSKTQGIALSLGDRI 940
                      *******************************97 PP

>> Coatamer_beta_C  Coatomer beta C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.0   1.9e-56     2e-53       1     139 [.     674     808 ..     674     809 .. 0.95
   2 ?   -3.2   0.0       6.7     7e+03     120     136 ..     907     923 ..     905     924 .. 0.86

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 1.9e-56
  Coatamer_beta_C   1 vddlisfrqlkekkelseeeeedlveedlsqatgakkkeeefasklkkvvqLtGfsDpvYaEayvkvnqfDivLdvlivNqtketLqnltvela 94 
                      vddl++frq+++k +++  +     +ed+s+atg+ + +e+f s+l+++ qLtGfsDp+YaEayvkv+ fDi+Ldvl+vNqt +tLqnl++++a
       CDO73176.1 674 VDDLLTFRQFSKKAADDVID----DSEDVSRATGSGEVTEDFISNLSRISQLTGFSDPIYAEAYVKVHGFDILLDVLLVNQTADTLQNLCLDFA 763
                      79*********988555544....479******************************************************************* PP

  Coatamer_beta_C  95 tlgdlklvekpqsvtlaphdfakikatvkvsstetGvifGnivYd 139
                      tlgdlklve+p+ +t+aph+f++ikat+kvsstetGvifG+i+++
       CDO73176.1 764 TLGDLKLVERPSIYTIAPHSFQSIKATIKVSSTETGVIFGSILWE 808
                      ******************************************998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.7
  Coatamer_beta_C 120 atvkvsstetGvifGni 136
                      a++ v+ te G+i G +
       CDO73176.1 907 ANLSVERTEEGTITGHV 923
                      6788999******9987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.8e-05     0.029       8      83 ..     108     193 ..     101     198 .. 0.80
   2 !    7.3   0.2    0.0058       6.1       4      58 ..     248     308 ..     245     321 .. 0.71
   3 !    7.6   0.1    0.0049       5.1       6      78 ..     287     369 ..     285     376 .. 0.72
   4 ?   -0.5   0.0       1.6   1.7e+03      15      35 ..     393     417 ..     378     445 .. 0.59
   5 ?    0.1   0.0         1   1.1e+03      12      72 ..     427     498 ..     417     506 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-05
      HEAT_2   8 lendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgaigd......pealpaLkellddddddvvReaA 83 
                 l ++p++++r a++r L +i  +      ++p+++++le+ +++vR++a+ a   i +      p+a ++ +  l+ ++d+  ++ A
  CDO73176.1 108 L-QHPNEYIRGATLRFLQKISKEvellePLVPICRSCLEHRHSYVRKNAVFAVYSIYRefehliPDAPELIQTFLAAESDATCKRNA 193
                 6.79**************98877655545699999999*************998664323346888888888888888888887766 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0058
      HEAT_2   4 LlqalendpdpevrraairaLg.rignp....ealpaLvell.ededpavRraaaeaLgai 58 
                 L++ l n ++++v+++a+ +L    +np     a  + ++l+ + +d +v   + + L a+
  CDO73176.1 248 LISELLNASSHAVKYEAAATLTsLTQNPaavkAAASCYINLVqKESDNNVKLIVLDRLDAL 308
                 888899****************435888333344666667774455667777666666655 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0049
      HEAT_2   6 qalendpdpevrraairaLgrignp......ealpaLvellededpavRraaa...eaLgaigd.pealpaLkellddddddv 78 
                 +++++ +d +v+  +++ L  ++++       ++  ++++l+++d +vRr a+    +L+  ++ +e++ +Lk+ l+ ++d++
  CDO73176.1 287 NLVQKESDNNVKLIVLDRLDALRSKhghvldPLIMDILQVLSSADIEVRRKAIgivLSLVSSRNvEEVVLFLKKQLQKTQDQE 369
                 66778888889999999999555553333334488889999***********9433344444434889999999999888875 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.6
      HEAT_2  15 evrraairaLg....rignpealpa 35 
                 ev++ +++aL     + +np+al+ 
  CDO73176.1 393 EVAASVVHALMdflgDTNNPSALDV 417
                 5556666665544445555544332 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 1
      HEAT_2  12 pdpevrraairaLg....rignp....ealpaLvelled.ed.pavRraaaeaLgaig.dpealpaLkelld 72 
                 ++p++r+++++ L     +i++      +l++L e++e+ +d  +v r+  + Lg+i  + +  ++L+e+ +
  CDO73176.1 427 KFPQLRQTICQKLIqtmpEIKSGkvyrGVLWILGEYAEHlQDiQEVFRQLRKVLGEIPiLASEQKLLEEASA 498
                 677888888877774444444433333346666666655544456666666666666544555555655555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.17   1.8e+02       4      29 ..     103     128 ..     100     130 .. 0.84
   2 !   11.3   0.0   0.00031      0.33       1      28 [.     136     163 ..     136     166 .. 0.92
   3 ?    4.2   0.0     0.062        65       5      29 ..     249     273 ..     247     274 .. 0.90
   4 ?    3.4   0.0      0.11   1.2e+02       2      24 ..     321     342 ..     320     348 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.17
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 ++ + l++p+  +R a+++ L ++++
  CDO73176.1 103 AIRNDLQHPNEYIRGATLRFLQKISK 128
                 566669***************99987 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00031
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 l+P++ ++l++ ++ VR++A+ a+  ++
  CDO73176.1 136 LVPICRSCLEHRHSYVRKNAVFAVYSIY 163
                 799********************99886 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.062
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 + +ll+ +s  V + Aa +L+ l +
  CDO73176.1 249 ISELLNASSHAVKYEAAATLTSLTQ 273
                 67899****************9987 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.11
                 HHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaL 24 
                 +++l+  ls+ + eVR+ A+  +
  CDO73176.1 321 MDILQV-LSSADIEVRRKAIGIV 342
                 666666.8*********998655 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.7e-06    0.0018       2     123 ..     115     231 ..     114     270 .. 0.71
   2 ?    0.8   0.3      0.44   4.6e+02      43      95 ..     228     279 ..     188     308 .. 0.62
   3 !   12.2   0.6   0.00013      0.14      17     161 ..     314     459 ..     297     460 .. 0.88
   4 ?   -0.8   0.1       1.3   1.4e+03      69     137 ..     614     691 ..     586     711 .. 0.64
   5 ?   -3.4   0.0         8   8.4e+03      53     108 ..     733     791 ..     728     803 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-06
        Cnd1   2 iRalairtlg.cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselakll.eDenprVvanalaalteiseksenaiynllp 98 
                 iR+  +r l    +  +l+e+lv+  r++L+ +++yVRk+a+++v  ++++      +  + +++ l  +++++   na  +l  ++  +         
  CDO73176.1 115 IRGATLRFLQkISKEVELLEPLVPICRSCLEHRHSYVRKNAVFAVYSIYREFEHLIPDAPELIQTFLaAESDATCKRNAFVFLAHCAMPK-------AV 206
                 788888888876777899******************************888766666667777787778889999999999999988876.......23 PP

        Cnd1  99 diisklsdalnecsewgqitilefL 123
                 ++i ++ d++ +++e  q++i+e++
  CDO73176.1 207 EYIMQVFDQIPSMDEHLQMSIIEVI 231
                 3333344455566677777777766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.44
        Cnd1  43 ivvakL.ilndmvkekgflselaklleDenprVvanalaalteiseksenaiyn 95 
                 i v++L  ++++  +   +  + +ll+ +++ V   a a lt + ++   a+++
  CDO73176.1 228 IEVIRLdCKHETSHKARYILLISELLNASSHAVKYEAAATLTSLTQNP--AAVK 279
                 445556666666666666666666777777777777777776666664..3333 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00013
        Cnd1  17 nlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDen.prVvanalaalteiseksenaiynllpdiisklsdalnecse 113
                 +++++l+ ++ + L+  d  VR+ a+ +v+ L++   v+e   fl++ ++  +D++ ++  +  +++++ i+  +  ++ ++  ++++ l d l + ++
  CDO73176.1 314 HVLDPLIMDILQVLSSADIEVRRKAIGIVLSLVSSRNVEEVVlFLKKQLQKTQDQEfEKAPEYRQLLIQSIHVCA-VKFSEVAASVVHALMDFLGDTNN 411
                 789*****************************8888888777677776666666664888888888888888888.899999999******9999**** PP

        Cnd1 114 wgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviL 161
                  +   ++ f+ + ++k  q  +++++kl++ +   +s +v + +  iL
  CDO73176.1 412 PSALDVVAFVREVVEKFPQLRQTICQKLIQTMPEIKSGKVYRGVLWIL 459
                 *******************9************9999999998877766 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.3
        Cnd1  69 DenprVvanalaalteisek..senaiynllpdiisklsdalne........csewgqitilefLlsyipkdkqeaesl 137
                 D+++r++ n++  l+e+ ++    +++++ ++  +sk+++a+++         s ++ i+ ++ Ll++ + +k+ a+++
  CDO73176.1 614 DSSERIM-NCIQTLSELDTQpaVHEIFLKDTKAAYSKMVAAQEKkaaekresESAKAAIVQVDDLLTFRQFSKKAADDV 691
                 4555543.78888888888865446667777777777776433333333422333333333444666666555555555 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 8
        Cnd1  53 mvkekgflselakll.eDenprVvanal..aalteiseksenaiynllpdiisklsdal 108
                 +vk+ gf   l  ll + + ++ ++++l  a l +++  +   iy++ p++++++++ +
  CDO73176.1 733 YVKVHGFDILLDVLLvNQTADTLQNLCLdfATLGDLKLVERPSIYTIAPHSFQSIKATI 791
                 66666655555555534444444444542234556666677778888888888777554 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.22   2.3e+02     190     250 ..     194     253 ..     187     257 .. 0.80
   2 !   16.3   1.2   4.6e-06    0.0049     153     259 ..     250     356 ..     245     364 .. 0.84
   3 !    9.4   0.2   0.00062      0.65     198     264 ..     373     441 ..     361     445 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
     DUF5578 190 liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelm 250
                 ++ l +c+ pka  + +q    + ++ ++ ++si+e  + l  + ++  ++  i li+el 
  CDO73176.1 194 FVFLAHCAMPKAVEYIMQVFDQIPSMDEHLQMSIIEV-IRLDCKHETSHKARYILLISELL 253
                 666789******************9999999***997.66666666666666777777765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.6e-06
     DUF5578 153 aeclakskseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlal.qtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelm 250
                 +e+l   +s++++ ea + l+sl++ nP   k   +  i l++ +s +  +l + + l  ++++ +++   ++  +l++L+s+++ev+ +ai ++ +l+
  CDO73176.1 250 SELLNA-SSHAVKYEAAATLTSLTQ-NPAAVKAAASCYINLVQKESDNNVKLIVlDRLDALRSKHGHVLDPLIMDILQVLSSADIEVRRKAIGIVLSLV 346
                 555554.566777888888898865.9*******************9988876559*****************************************99 PP

     DUF5578 251 st.evraall 259
                 s+ +v++ +l
  CDO73176.1 347 SSrNVEEVVL 356
                 5537776655 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00062
     DUF5578 198 spkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst..evraallkglva 264
                 +p+ +ql +q+++v   + +e+  s+v++l++ L  ++     +++ +++e++++  ++r+++ ++l++
  CDO73176.1 373 APEYRQLLIQSIHVCAVKFSEVAASVVHALMDFLGDTNNPSALDVVAFVREVVEKfpQLRQTICQKLIQ 441
                 78899**********************************************997667999***999997 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.9   9.4e+03      61      93 ..      42      75 ..      20      90 .. 0.53
   2 ?    4.2   0.0     0.048        51      53      99 ..     202     256 ..     189     274 .. 0.73
   3 ?    0.6   0.1       0.6   6.4e+02      56      99 ..     319     366 ..     305     384 .. 0.62
   4 !   12.8   0.0   9.9e-05       0.1      22      59 ..     394     431 ..     381     442 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.9
                HHHH.HSS-HHHHHHHHHHHGGGS-HHHHHHHHH CS
     DUF5071 61 aeiL.eknDeewkyfvleflveklpveskkklke 93
                ++i+  +  ++ + ++l+ +++ +  +++k+lk+
  CDO73176.1 42 RKIIvATINGNPQPQLLMPIIQYVMPSRNKQLKK 75
                3333333344444445555555555555555554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.048
                 GGGTHHHHHHHH...HSS-HHHHHHHHHHHGGGS-HHHHHH.....HHHHHHHHH CS
     DUF5071  53 peelvkeiaeiL...eknDeewkyfvleflveklpveskkk.....lkeelerlv 99 
                 + ++v+ i++++    + De+ +++++e++  ++ +e + k     l +el + +
  CDO73176.1 202 MPKAVEYIMQVFdqiPSMDEHLQMSIIEVIRLDCKHETSHKaryilLISELLNAS 256
                 56788899999665589**************999999988856555445554444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.6
                 THHHHHHHHHSS-HHHHHHHHHHHGGGS-HHHHHH....HHHHHHHHH CS
     DUF5071  56 lvkeiaeiLeknDeewkyfvleflveklpveskkk....lkeelerlv 99 
                 l+ +i ++L++ D e +   + ++   ++  + ++    lk++l++  
  CDO73176.1 319 LIMDILQVLSSADIEVRRKAIGIVLSLVSSRNVEEvvlfLKKQLQKTQ 366
                 455666777999999887766555544443333333334777776644 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 9.9e-05
                 HHGGGHHHHHGGGS-TTSTTHHHHHHHHHHTGGGTHHH CS
     DUF5071  22 elkplvpeLLeWlqDlNwPiaspiaelLarfpeelvke 59 
                     +v+ L+++l D N+P a +++  +++ +e++ + 
  CDO73176.1 394 VAASVVHALMDFLGDTNNPSALDVVAFVREVVEKFPQL 431
                 556789*********************99999887655 PP

>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.3e-06    0.0034       2     109 ..     828     934 ..     827     940 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.3e-06
                      GGEEE---S..-HHHHHHHH-STT-EEEEEEESS---HHHHHHHHHHHHT-EE-TTTT---SS-SEEEEEEEEEETTS-EEEEEEEEEE..SS. CS
  Coatomer_g_Cpla   2 Dyikpvavs..nFeaaWeeleseaeavetfaLssvksleeavdkliellgmqplegsdkvpenassHtLklaGkfvggekvlvrarlalssskg 93 
                      Dyikp++ +  +F+++W e e e+ +  t +   +++ +e  +++++ ++m+ l      + +    + +++  ++ ge+ l+++++  +++++
       CDO73176.1 828 DYIKPAYCTeqQFRSMWTEFEWENRVNVTTT---ISDPREYLHHVMKATNMSCLTPEGALSGDCDFLSANMYARSLFGEDALANLSVERTEEGT 918
                      9******9999**********9755555555...5899********************99999999**************************** PP

                      EEEEEEEEESSHHHHH CS
  Coatomer_g_Cpla  94 vtlkltvRsedeevae 109
                      +t ++ +Rs+++ +a 
       CDO73176.1 919 ITGHVRIRSKTQGIAL 934
                      **********998875 PP

>> Gemini_V2  Geminivirus V2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.26   2.7e+02      21      74 ..     205     258 ..     198     262 .. 0.71
   2 !   11.5   0.0   0.00024      0.25       3      72 ..     726     795 ..     724     798 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.26
   Gemini_V2  21 AvkylqevektyspdtvgyelirdLisvlR..arnyveatrRyshfhsrlegtsea 74 
                 Av y+ +v ++    +++ +l  ++i+v+R  +++    + Ry  + s+l ++s+ 
  CDO73176.1 205 AVEYIMQVFDQ--IPSMDEHLQMSIIEVIRldCKHETSHKARYILLISELLNASSH 258
                 67777766655..45788899999*****944566666678999999998877765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00024
   Gemini_V2   3 dPLlnefPetvhGfrcmLAvkylqevektyspdtvgyelirdLisvlRarnyveatrRyshfhsrlegts 72 
                 dP+  e    vhGf  +L v ++++ ++t++  ++++  + dL  v R   y  a + ++ ++++++ +s
  CDO73176.1 726 DPIYAEAYVKVHGFDILLDVLLVNQTADTLQNLCLDFATLGDLKLVERPSIYTIAPHSFQSIKATIKVSS 795
                 7888888889****************************************************99997655 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.8e-05     0.051      50     135 ..     190     274 ..     178     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.8e-05
                 -----CCC----B-TT-HHHHHHHTTSB-SSSTTSBHHHHHHHHHHHS----S--EEETTTEE-TTTT----C.CHHHHHHHHHCS CS
        MCRA  50 pekGyvlrggreleehyeclwdLlssipSleepgasvldeieelnkedknkskarlvekrgeeavddkklglskkdrlellkLllt 135
                 +++ +v+ + + + +  e +++++++ipS++e+ +  + e+ +l+ ++++++kar +    +e  ++++  ++ +++ +l++L+ +
  CDO73176.1 190 KRNAFVFLAHCAMPKAVEYIMQVFDQIPSMDEHLQMSIIEVIRLDCKHETSHKARYILL-ISELLNASSHAVKYEAAATLTSLTQN 274
                 5679***************************998777778899999********99988.55788888888888888888887765 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.8     3e+03      85     105 ..      25      45 ..      23      78 .. 0.69
   2 ?   10.2   0.0   0.00058      0.61      81     137 ..     100     155 ..      86     186 .. 0.80
   3 ?    3.4   0.3     0.068        71      73     127 ..     311     363 ..     243     384 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.8
       ParcG  85 lkeaLntrdeeviesaLkvlq 105
                 l++aL++ ++ev + +L+ + 
  CDO73176.1  25 LRNALQKGSDEVKIDTLRKII 45 
                 899999999999999998663 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00058
       ParcG  81 lilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkrv 137
                 ++ +++++L++ +e +  ++L+ lqk+ + +    e Lvp  r  L +   + +k+ 
  CDO73176.1 100 VVNAIRNDLQHPNEYIRGATLRFLQKI-SKEVELLEPLVPICRSCLEHRHSYVRKNA 155
                 5789***********************.666667799**********9999988883 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.068
       ParcG  73 kilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLp 127
                 k  +vl  li+ + + L++ d ev  +a+ ++  lv++ ++  e+ v ++++ L+
  CDO73176.1 311 KHGHVLDPLIMDILQVLSSADIEVRRKAIGIVLSLVSSRNV--EEVVLFLKKQLQ 363
                 44567888888888999999999999999988888655543..455556665554 PP

>> DNA_alkylation  DNA alkylation repair enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.36   3.8e+02     159     185 ..     103     129 ..      90     156 .. 0.56
   2 ?    0.9   0.1       0.3   3.1e+02      42      93 ..     235     288 ..     223     299 .. 0.72
   3 ?    6.8   0.0    0.0046       4.9     162     203 ..     326     367 ..     317     376 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.36
  DNA_alkylation 159 iaeelladkedfiqkAiGwaLrelskt 185
                      + + l+++++ i+ A+  +L ++sk+
      CDO73176.1 103 AIRNDLQHPNEYIRGATLRFLQKISKE 129
                     555555555555555555555555554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.3
  DNA_alkylation  42 ffkelkleeelqelaeeLwksperEerllAldlltqakkk..laeadlelyekl 93 
                      + e+++++++  l++eL++   +  ++ A+  lt   +   + +a    y +l
      CDO73176.1 235 CKHETSHKARYILLISELLNASSHAVKYEAAATLTSLTQNpaAVKAAASCYINL 288
                     5567777788899*****************999988774322333345555555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0046
  DNA_alkylation 162 elladkedfiqkAiGwaLrelsktdpdlveeFlekhakrmpr 203
                      l +   +  +kAiG +L  +s ++ ++v  Fl+k+ ++ + 
      CDO73176.1 326 VLSSADIEVRRKAIGIVLSLVSSRNVEEVVLFLKKQLQKTQD 367
                     55555556779***********************97766554 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.32       4      83 ..     104     180 ..     101     225 .. 0.83
   2 ?    0.9   0.5      0.46   4.9e+02       4      28 ..     323     347 ..     239     424 .. 0.64
   3 ?   -2.8   0.0       6.5   6.9e+03      16      34 ..     588     612 ..     581     645 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeev..lklLleey 83 
                 + +dlq p   +r+  l+ L+k+ ++      + +e ++ ++ ++L++  sYv  na+ ++ ++   f++ +   ++L++ +
  CDO73176.1 104 IRNDLQHPNEYIRGATLRFLQKISKEV-----ELLEPLVPICRSCLEHRHSYVRKNAVFAVYSIYREFEHLIpdAPELIQTF 180
                 56899999999***9999999986655.....6999****************************999988773336777777 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.46
     RTP1_C1   4 alkdlqdpllpvrahglvlLrklie 28 
                 +l+ l++  + vr +++    +l++
  CDO73176.1 323 ILQVLSSADIEVRRKAIGIVLSLVS 347
                 3333444444444444444444444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.5
     RTP1_C1  16 rahglvlLrkliekkske......a 34 
                 +a++++ ++++i+  +++      +
  CDO73176.1 588 KAEAMLIMASIIRVGQSKfvtvpiD 612
                 5666666666665555444444442 PP

>> Meis_PKNOX_N  N-terminal of Homeobox Meis and PKNOX1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00038       0.4       5      58 ..     346     401 ..     343     407 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00038
  Meis_PKNOX_N   5 cssdsFsediavfakqvekeekplleenpeldslmikaiqvlrihllelek..VhE 58 
                   +ss   +e +  + kq++k++ + +e+ pe  +l+i++i+v  + + e+    Vh 
    CDO73176.1 346 VSSRNVEEVVLFLKKQLQKTQDQEFEKAPEYRQLLIQSIHVCAVKFSEVAAsvVHA 401
                   566666666666777888888889*****************998888765444555 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.11   1.2e+02      23      41 ..     162     180 ..     118     181 .. 0.75
   2 ?    6.6   0.0    0.0082       8.7       2      33 ..     451     482 ..     450     489 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.11
         PAH  23 VyeqVskLFhdhpdLlreF 41 
                 +y +   L+ d p+L++ F
  CDO73176.1 162 IYREFEHLIPDAPELIQTF 180
                 7888999**********77 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0082
         PAH   2 vYkeFLdiLhdyqkeqidskeVyeqVskLFhd 33 
                 vY   L iL +y ++  d++eV+ q++k +  
  CDO73176.1 451 VYRGVLWILGEYAEHLQDIQEVFRQLRKVLGE 482
                 89999**********88**********98876 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0038         4      11      73 ..     105     169 ..      99     225 .. 0.91
   2 ?    1.3   0.3      0.42   4.4e+02       9      52 ..     248     291 ..     243     327 .. 0.75
   3 ?    1.2   0.2      0.44   4.7e+02      11      53 ..     324     366 ..     318     385 .. 0.86
   4 ?   -2.5   0.0       6.6     7e+03      38      64 ..     414     440 ..     375     471 .. 0.55
   5 ?   -0.6   0.0       1.6   1.7e+03      31      82 ..     700     751 ..     677     756 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0038
  RasGEF_N_2  11 vnqLydqsrevvaaaleiLeeacddkeslevlve.lkpslqhlge.igslLllkllstssGfkyl 73 
                  n L+ +++ ++ a+l++L++++++ e le lv  ++ +l+h  + +++  ++ ++s+ ++f++l
  CDO73176.1 105 RNDLQHPNEYIRGATLRFLQKISKEVELLEPLVPiCRSCLEHRHSyVRKNAVFAVYSIYREFEHL 169
                 578999****************************788899999666*****************98 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.42
  RasGEF_N_2   9 llvnqLydqsrevvaaaleiLeeacddkeslevlvelkpslqhl 52 
                 l+ + L+ +s++v   a+  L + +++++ +++ +++  +l + 
  CDO73176.1 248 LISELLNASSHAVKYEAAATLTSLTQNPAAVKAAASCYINLVQK 291
                 44456799999999999999999999999999999988887554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.44
  RasGEF_N_2  11 vnqLydqsrevvaaaleiLeeacddkeslevlvelkpslqhlg 53 
                 ++ L+  + ev+++a+ i+ + +++++  ev++ lk++lq+ +
  CDO73176.1 324 LQVLSSADIEVRRKAIGIVLSLVSSRNVEEVVLFLKKQLQKTQ 366
                 566789999*****************99999999*****8874 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 6.6
  RasGEF_N_2  38 slevlvelkpslqhlgeigslLllkll 64 
                  l v++ +++ +++  + ++++  kl+
  CDO73176.1 414 ALDVVAFVREVVEKFPQLRQTICQKLI 440
                 333333333333333333333333333 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.6
  RasGEF_N_2  31 eacddkeslevlvelkpslqhlgeigslLllkllstssGfkylqelnfveee 82 
                 +a+ + e +e +++   ++++l  + ++++ + +    Gf  l +   v++ 
  CDO73176.1 700 RATGSGEVTEDFISNLSRISQLTGFSDPIYAEAYVKVHGFDILLDVLLVNQT 751
                 5666778889999988899999889***************999887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.48
# Mc/sec: 5972.42
//
Query:       CDO73177.1  [L=509]
Description: hypothetical protein BN946_scf185007.g232 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-22   80.0  19.8    1.1e-12   47.5   4.6    2.2  2  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   4.6   6.1e-17   1.1e-12       2      94 ..      60     155 ..      59     166 .. 0.89
   2 !   38.2   7.3     4e-14   7.1e-10     203     422 ..     246     460 ..     203     471 .. 0.69

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 6.1e-17
  Transp_cyt_pur   2 vpe.eeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfG.irgsllplllr 93 
                     vpe ++ t +++n + +W + n +++t+ ig+lg   + L +  ++++i+++  +g++++a+++  G+k+Gl+++++ R+s G i g + ++l++
      CDO73177.1  60 VPEdQRETKNMWNNLLMWWSVNTVLTTIPIGTLGqAFYTLTLPHAIATILCFGALGGVATAFISTLGPKTGLRTMVITRFSSGyIGGTIYSILNI 154
                     78845557889***********************88899********************************************888888888885 PP

  Transp_cyt_pur  94 v 94 
                     +
      CDO73177.1 155 L 155
                     4 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 4e-14
  Transp_cyt_pur 203 flsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaaka...ayganawspld..ilakfdet.agvllililv 291
                     f   v+g   g+a++++   D+   ++  +ss+ki+l+++++l ++++++ il+aa+ ++   ay + +++++   ++a+++    g+  +l+++
      CDO73177.1 246 FGGIVFGSFTGWAPVAA---DYNCRLPANTSSMKIFLLTFFGLWIPICFVEILGAALMTIsdpAYTQAYADGSTggLVAQVLAPwGGGGKFLLVL 337
                     55557777888888888...**********************************99866522246666666653336666666654455566777 PP

  Transp_cyt_pur 292 alaqlgvnisanllsagldlaallP..kkinikrgsliaavialvivpwkllssssklftaflsllavflspvagviiadyfvvrrgylklaaly 384
                     +   ++ n+  n++sagl ++ l      i++ +   ++ ++ ++ +++   + + +     ls +  +ls++++ +i        ++++ ++++
      CDO73177.1 338 LGLSVVANNIPNSYSAGLSMQSLGRpfALIPRFA---WTFLAFVIYTVAGVAGREHF--SEILSNFLSILSYWTAFFI--------VIVAEEHFI 419
                     7778888888889999999998875233344444...44444444444444455555..3334444444444544444........556666777 PP

  Transp_cyt_pur 385 trrrgsa...YwyrkgvNwravaayivGiaaglvgvagsvg 422
                     +rr+g++   Y+ ++++ + +++++ +Gi+ag  gvag+v 
      CDO73177.1 420 FRRKGGPlggYNLDDWDTPSRLPIGFAGILAGCFGVAGAVV 460
                     7775544333*************************998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3704.18
//
Query:       CDO73178.1  [L=727]
Description: hypothetical protein BN946_scf185007.g233 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 5076.48
//
Query:       CDO73179.1  [L=662]
Description: Glycosyltransferase Family 22 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-90  304.5  16.1    1.7e-90  304.2  16.1    1.1  1  Glyco_transf_22  Alg9-like mannosyltransferase family


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.2  16.1   9.7e-95   1.7e-90       5     417 .]      61     516 ..      57     516 .. 0.87

  Alignments for each domain:
  == domain 1  score: 304.2 bits;  conditional E-value: 9.7e-95
  Glyco_transf_22   5 lllalrlllalltqtsfdpDEffqslEvahklvfgkgtltWEyspkygiRSylfllllalpyrllaelvadskiavlyapRlllallsalidyy 98 
                      +ll +r+  a+ t +  d+DE+++ +E++h+l++g+g++tWE sp+y+iRS++++ll++lp+ + a l++ +k   ++a+R++l+++s+l+++ 
       CDO73179.1  61 ILLLIRVAGAMYTGIQ-DCDEVYNFWEPLHYLFKGYGFQTWETSPEYAIRSWAYILLHYLPVQISATLIGPEKRPAFFAVRIFLGIVSSLCEVT 153
                      7899************.***************************************************************************** PP

  Glyco_transf_22  99 lfravcrkygseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliRptsallwlplvl 192
                      ++rav  +++ ++ +++++l+l++ g++++st+++++s++m++ ++a+ + +e  ++en    + ++l+a l +a++av+++p+++++ +p+v+
       CDO73179.1 154 FYRAVVDRINYRVGRYVFFLLLFNAGMWTASTAFLPSSFAMYANTLAFAHALEPPGTEN----ARRTLFATLAFALGAVVGWPFAIAVAIPFVF 243
                      ****************************************************8443333....35779************************** PP

  Glyco_transf_22 193 flllrlvkkrsktf.......lflii...alvllvlllvlvlviliDslfYgkfvftplnflkyNvl...snlsslyGvhPwyfYllqnlpnil 273
                      + l  +++   k+         f+++   ++   v++l +v v+++D+lfYgk++++p+n++kyNv+   +++++lyG++P +fYl + l+n++
       CDO73179.1 244 EEL--FISGTDKVTsatrgswYFGRWkrmMTAAGVAVLLTVPVVALDTLFYGKLTVVPWNIVKYNVFpdsQRGPELYGTEPTSFYLANLLLNFN 335
                      *88..444444444456778744444111444555666666799*************************999*********************9 PP

  Glyco_transf_22 274 gvlllavllgllvl.lsr..................kvsrlllllltilltLlvysllpHKElRFllpvlPlillsaavlltrls......... 339
                      +++ +a++++++   +                     ++ l   l++ +l+L++++ + HKE+RFl+p++Pli+++aav++  +          
       CDO73179.1 336 VIVPFALFALPALAiT-HrvdnkrlgerytyadkssPYTLLAIRLAPAYLWLAIMTSQRHKEERFLYPIYPLICFNAAVTIYLVRgwletafia 428
                      9998888888888843.3478899*********997666688899***********************************99999999****** PP

  Glyco_transf_22 340 ........resakvskk....lsllvllllfnvvlalllglvhqagvillv.evmseleetkr.knrkekkets...svyvlkecyrtPsssyl 416
                              ++s     +     +l v+     ++++++++  + +++++ v  ++++ e++ + ++    +  +   +++v+ke++r+P+ +++
       CDO73179.1 429 vtnspykaSRS-----TlfsqFTLSVVAASCILSVSRIMAHWKYYHAPMSVtHALEAAEDELPrIDLSLVE--EwglRLCVGKEWHRFPGHFLV 515
                      *8765543333.....134445888888889999******************9999998875404443333..13469*************987 PP

  Glyco_transf_22 417 h 417
                      +
       CDO73179.1 516 P 516
                      5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4781.29
//
Query:       CDO73180.1  [L=396]
Description: hypothetical protein BN946_scf185007.g235 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.4   0.1       0.16   12.4   0.1    3.1  3  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.67   1.2e+04      29      85 ..      18      26 ..      13      51 .. 0.60
   2 ?    1.1   1.9     0.031   5.6e+02      27      54 ..     143     206 ..     134     212 .. 0.53
   3 ?   12.4   0.1   9.2e-06      0.16       3      50 ..     212     259 ..     210     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.67
        FtsX 29 tlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagl 85
                + va+++G                                                 
  CDO73180.1 18 VYVASLSG------------------------------------------------T 26
                33333333................................................2 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.031
        FtsX  27 litlvalviGlgl....................................gllaaqllsdvllss 54 
                 l++lva+++G+++                                    g+++a ll+d l ++
  CDO73180.1 143 LVFLVAALAGVVAyqlfvatsemlllpflpgdttgpclpmskphsahllGFFIAPLLYDTLVTF 206
                 3344444444333222445555555555555555555555555555555666666666655555 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 9.2e-06
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdv 50 
                  i+i+r  G  + q+++ +l e++++ ++ +++ l++g++++q+ ++ 
  CDO73180.1 212 AISIRRRNGGPSSQLIQTFLREGVFYYILISFANLVNGIFYLQPRQAI 259
                 699****************************************94333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2672.00
//
Query:       CDO73181.1  [L=122]
Description: hypothetical protein BN946_scf185007.g236 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 840.25
//
Query:       CDO73182.1  [L=2224]
Description: hypothetical protein BN946_scf185007.g237 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-67  227.3   0.0    7.1e-37  127.7   0.0    3.2  3  Sin3a_C         C-terminal domain of Sin3a protein
    1.6e-42  143.4  11.8    2.1e-18   66.2   0.0    3.6  3  PAH             Paired amphipathic helix repeat
    1.4e-38  130.9   0.1    3.1e-38  129.8   0.1    1.5  1  Sin3_corepress  Sin3 family co-repressor
      0.005   17.3   0.1      0.005   17.3   0.1    2.0  2  Zn-C2H2_12      Autophagy receptor zinc finger-C2H2 domain
  ------ inclusion threshold ------
       0.12   12.7   0.1        0.3   11.4   0.1    1.7  1  PWI             PWI domain


Domain annotation for each model (and alignments):
>> Sin3a_C  C-terminal domain of Sin3a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.97   3.5e+03      60      87 ..     137     161 ..     124     173 .. 0.79
   2 !   97.0   0.0   4.3e-31   1.5e-27       1     103 [.    1076    1190 ..    1076    1190 .. 0.96
   3 !  127.7   0.0     2e-40   7.1e-37     125     286 .]    1190    1338 ..    1188    1338 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.97
     Sin3a_C  60 rleseeeeeeyYsqllelveklldGeid 87 
                 ++   +++ ++Y+++l+ ++++    id
  CDO73182.1 137 QF---QDKPDVYNHFLDIMKDFKSQVID 161
                 34...78899**********99777776 PP

  == domain 2  score: 97.0 bits;  conditional E-value: 4.3e-31
     Sin3a_C    1 FfaNttfYvflrlfqiLyeRLlkikqaeeqv.aeevkerkankvavelgldkkesealalrle...........seeeeeeyYsqllelveklldGe 85  
                  Ffa ttfY++lrl+q+Ly+RLl +k++ +++ ae++++  +n++avelgld+ + +++ l+ +           + ee++ +Y +ll+++ek++++e
  CDO73182.1 1076 FFAGTTFYTLLRLLQLLYSRLLVCKEIGARMaAEKHASLLPNPIAVELGLDEPNGPSVVLQQAmeafggsgtaaAGEEPNVLYAYLLDACEKVFENE 1172
                  9****************************999*******************99999999988446899999999*********************** PP

     Sin3a_C   86 idqsqfEdslRemfgika 103 
                  +dq++fE+++R++f +ka
  CDO73182.1 1173 LDQATFEEHMRWFFRTKA 1190
                  ****************98 PP

  == domain 3  score: 127.7 bits;  conditional E-value: 2e-40
     Sin3a_C  125 sDekcqellelfeker.skeettsqdeisyrkkaekll.kdenlfriewkseskkltiqlldkddetldddeveaeerwkeYvesYvlveptegv.. 217 
                  +D+kcqel++l+++ r ++++tt ++ i+yr++ae+++ +de+l+r++w+ +skkl+iql++ dd+t d+de +ae rw++Yv+sYv+v+pte++  
  CDO73182.1 1190 ADNKCQELWYLLQQARgAEKATTIHELIRYRREAERHVaSDEKLYRLDWDATSKKLRIQLMGPDDPTADEDE-SAEGRWRAYVASYVMVHPTEWIpa 1285
                  69**************7777779999**********************************************.99********************55 PP

     Sin3a_C  218 ereklkkvfLkRnlkaerkeeekkeeeeqekaekeeeaekeleveekleiriclnsyklvyvpgtedvl 286 
                   +++  +v LkRn+++  +e                 +  e+ ve++++++i+ ++yk+ y+ gtedvl
  CDO73182.1 1286 GASSYVPVILKRNMPDGVEE----------------GKDGEVLVENGMRVQIQRGTYKVRYERGTEDVL 1338
                  45666677******333111................234678889**********************97 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   5.9e-22   2.1e-18       1      45 []     143     187 ..     143     187 .. 0.99
   2 !   58.2   5.6   1.8e-19   6.4e-16       1      45 []     339     386 ..     339     386 .. 0.89
   3 !   21.2   0.1   6.8e-08   0.00024       2      42 ..     535     574 ..     534     577 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 5.9e-22
         PAH   1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 +vY++FLdi++d++++ id+++V+e+Vs+LFh++p+L+++Fn+FL
  CDO73182.1 143 DVYNHFLDIMKDFKSQVIDTPGVIERVSMLFHGNPYLIQGFNTFL 187
                 79******************************************8 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 1.8e-19
         PAH   1 evYkeFLdiLhdyqkeq...idskeVyeqVskLFhdhpdLlreFnqFL 45 
                 e+Yk+FL+iL++yqkeq    d+  Vy+qV++LF+d pdL++eF+ FL
  CDO73182.1 339 ETYKQFLEILQTYQKEQrhmQDQSQVYAQVQMLFKDAPDLMDEFKDFL 386
                 89**************733345666**********************8 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 6.8e-08
         PAH   2 vYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFn 42 
                 +Y+eFL++L+ ++++ id+k+++ +   ++ ++ dL+  F+
  CDO73182.1 535 TYDEFLKLLNLFSRDIIDTKTLIDRAEIFL-GDGDLMAQFK 574
                 7************************87666.7899999997 PP

>> Sin3_corepress  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.1   8.6e-42   3.1e-38       4      98 .]     612     705 ..     610     705 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 8.6e-42
  Sin3_corepress   4 gpsYrlLpksyqqpkcsgrdelekevLNdewvsvptwasedsgsfkasrknqyeealfrcEderyelDmvieanrstiklleelakkiesmseee 98 
                     gpsYr+Lp+s+++++csgrd l+++vLNdewvs+ptwase++g f +++kn++e++l+++E+er+e+ ++iea+++ti++le+l+ +ie+ms+ee
      CDO73182.1 612 GPSYRRLPDSEVRLACSGRDRLCWSVLNDEWVSHPTWASEEAG-FMTHKKNSFEDTLHKSEEERHEFQVHIEALTRTIAVLEPLEARIENMSPEE 705
                     8*****************************************8.************************************************997 PP

>> Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.9       2.8     1e+04      15      24 ..     673     682 ..     669     683 .. 0.82
   2 !   17.3   0.1   1.4e-06     0.005       6      23 ..    1165    1182 ..    1164    1184 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
  Zn-C2H2_12  15 dqdeFeeHVe 24 
                 + +eF+ H+e
  CDO73182.1 673 ERHEFQVHIE 682
                 679*****98 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.4e-06
  Zn-C2H2_12    6 CseqFpknvdqdeFeeHV 23  
                  C+++F +++dq++FeeH+
  CDO73182.1 1165 CEKVFENELDQATFEEHM 1182
                  *****************9 PP

>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.4e-05       0.3      16      69 ..    1151    1206 ..    1147    1209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
         PWI   16 gfeDdvvieyvlnlLeee..keldpkklqinltgfLekeaekFvkeLWelllsaqs 69  
                  g e  v++ y l+  e+   +eld+  +++++  f + +a + ++eLW ll +a+ 
  CDO73182.1 1151 GEEPNVLYAYLLDACEKVfeNELDQATFEEHMRWFFRTKADNKCQELWYLLQQARG 1206
                  6677777777777775556678*****************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1186  (0.0661498); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.41u 0.38s 00:00:01.79 Elapsed: 00:00:00.57
# Mc/sec: 11754.01
//
Query:       CDO73183.1  [L=185]
Description: hypothetical protein BN946_scf185007.g238 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.52   10.3  10.3       0.74    9.8  10.3    1.4  1  Trypan_PARP  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  10.3   4.1e-05      0.74      46     117 ..      43     113 ..       9     116 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 4.1e-05
  Trypan_PARP  46 gtkvsdddtngt.dpepepepepepepepepepepetepeeepepepepepepepepepepepepepgaatlk 117
                  g + ++d t      ep   p p   p  + +p p  +pe e      pe     ep+ e+epe e g  t k
   CDO73183.1  43 GVRATSDPTTFRqYWEPIILPSPRASPRSKVQPLPPVDPEAEVVTSESPE--EPVEPQAEAEPEFEQGGETAK 113
                  55555444443324566666666666766777777666666665555555..446777888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1318.53
//
Query:       CDO73184.1  [L=329]
Description: hypothetical protein BN946_scf185007.g239 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-12   44.7   0.1    1.3e-11   44.0   0.1    1.4  1  SH3_1     SH3 domain
    8.7e-10   38.1   0.0    1.5e-09   37.4   0.0    1.4  1  SH3_2     Variant SH3 domain
    2.9e-09   36.7   0.0      5e-09   35.9   0.0    1.4  1  SH3_9     Variant SH3 domain
  ------ inclusion threshold ------
      0.072   13.4   0.0       0.13   12.5   0.0    1.4  1  SH3_3     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1   2.8e-15   1.3e-11       1      48 []     276     323 ..     276     323 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 2.8e-15
                 EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +AlY+Y+a+   + E+sf kGD++++l+k+ + Ww++r  + g  G+ Ps
  CDO73184.1 276 KALYNYTASPddPTEISFAKGDILEILDKNGK-WWQARKPD-GTIGIAPS 323
                 7********98899**************7777.*******9.69*****7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   3.3e-13   1.5e-09       2      56 ..     275     328 ..     274     329 .] 0.90

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 3.3e-13
                 EEESS-B-S..CGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvg..edkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslvee 56 
                 ++a+ +y++   d++e+sf kGd++ +l     ++++ww++++ +G+ G++Ps+++++
  CDO73184.1 275 AKALYNYTAspDDPTEISFAKGDILEIL----DKNGKWWQARKpDGTIGIAPSNYLQI 328
                 6889999996677778************....9999********************97 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.1e-12     5e-09       1      49 []     277     327 ..     277     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.1e-12
       SH3_9   1 Alypye..preddeLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyve 49 
                 Aly+y+  p++++e+s+ +GD++ ++++ ++ W+++++ +G+ G  P+ny++
  CDO73184.1 277 ALYNYTasPDDPTEISFAKGDILEILDK-NGKWWQARKpDGTIGIAPSNYLQ 327
                 89***97778888***************.********99***********96 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05      0.13      20      53 ..     294     325 ..     286     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
       SH3_3  20 pyGekVevleetgggeWykvrtddgteGwvssgy 53 
                  +G+ +e+l++ g   W++ r++dgt G + s y
  CDO73184.1 294 AKGDILEILDKNGK--WWQARKPDGTIGIAPSNY 325
                 69************..**********98665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2547.96
//
Query:       CDO73185.1  [L=635]
Description: hypothetical protein BN946_scf185007.g240 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-08   33.1   9.1    6.2e-08   32.4   9.1    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    2.1e-06   27.9  10.2    3.6e-06   27.2  10.2    1.4  1  zf-RING_2     Ring finger domain
    3.9e-06   26.8  10.2    7.5e-06   25.9   7.6    2.3  2  zf-RING_UBOX  RING-type zinc-finger
    7.7e-06   25.7   6.2    1.3e-05   25.0   6.2    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      3e-05   23.8   8.3    0.00032   20.5   9.2    2.0  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    5.8e-05   23.2  10.3    9.4e-05   22.5  10.3    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    0.00011   22.1   6.5    0.00019   21.3   6.5    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0012   18.5   7.5     0.0025   17.5   7.5    1.5  1  zf-MIZ        MIZ/SP-RING zinc finger
  ------ inclusion threshold ------
      0.018   14.9   6.9      0.039   13.8   6.9    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
      0.023   14.5   5.0      0.041   13.7   5.0    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
       0.37   11.1   5.0       0.74   10.1   5.0    1.5  1  zf-rbx1       RING-H2 zinc finger domain
       0.76    9.6   8.1        3.7    7.4   4.3    2.6  2  zf-RING_11    RING-like zinc finger


Domain annotation for each model (and alignments):
>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   9.1   4.1e-11   6.2e-08       1      41 []     124     166 ..     124     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.1e-11
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvkCPlC 41 
                 CpiCl+ ++ p  +++C+H +C++Ci++++++    k v CP+C
  CDO73185.1 124 CPICLSPPAAPR-MTKCGHIYCFPCILHLISTsdqPKWVRCPIC 166
                 ************.******************955445555**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2  10.2   2.4e-09   3.6e-06       2      43 ..     123     166 ..     122     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.4e-09
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.....CPlC 43 
                 +CpICl   s++  ++ ++CgH++++ C+ +++ +s +     CP+C
  CDO73185.1 123 SCPICL---SPPAAPRMTKCGHIYCFPCILHLISTSDQpkwvrCPIC 166
                 7****9...4445555557************9999999********* PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   7.6     5e-09   7.5e-06       1      39 []     124     164 ..     124     164 .. 0.86
   2 ?    3.9   0.2     0.036        54       1       9 [.     163     171 ..     163     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5e-09
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreCl.w.elskslegafkCP 39 
                   CpICl++   P + ++CGH++C +C+    +++++ + ++CP
    CDO73185.1 124 CPICLSPPAAPrM-TKCGHIYCFPCIlHlISTSDQPKWVRCP 164
                   ********9**44.59**********6367888999999998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.036
  zf-RING_UBOX   1 CpIClelft 9  
                   CpIC+++ +
    CDO73185.1 163 CPICFDSVN 171
                   *****9865 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   6.2   8.5e-09   1.3e-05       4      47 ..     123     170 ..     121     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8.5e-09
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.....TT-B-TTT--B- CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk.....rkkkCpiCrrpi 47 
                  C+iCl+ p+   + +CgH+ +C  C  +l +     +  +CpiC  ++
  CDO73185.1 123 SCPICLSPPAAPRMTKCGHI-YCFPCILHLIStsdqpKWVRCPICFDSV 170
                 7*******************.**********9998777789****7666 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   9.2   2.1e-07   0.00032       2      40 .]     124     166 ..     123     166 .. 0.82
   2 ?    4.2   0.2     0.027        40       1      10 [.     162     171 ..     162     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.1e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn.....eCPlC 40 
                 CpiCl     p ++t+CgH +C  Cil  ++ ++     +CP+C
  CDO73185.1 124 CPICLSPPAAP-RMTKCGHIYCFPCILHLISTSDqpkwvRCPIC 166
                 *********99.***************9666543112467**99 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
  zf-C3HC4_2   1 kCpiCldmlk 10 
                 +CpiC+d+ +
  CDO73185.1 162 RCPICFDSVN 171
                 6******876 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  10.3   6.3e-08   9.4e-05       1      42 []     124     166 ..     124     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.3e-08
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeq.llCplC 42 
                 CPiCl+    P   +CGh++C+ Ci +l   +d+ + ++Cp C
  CDO73185.1 124 CPICLSPPAAPRMTKCGHIYCFPCILHLISTSDQPKwVRCPIC 166
                 ******************************99998889****9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   6.5   1.3e-07   0.00019       2      42 ..     124     166 ..     123     168 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.....ekeavCpiC 42 
                 C++C ++     ++ +t+CgHi+C  C+ +l       k ++CpiC
  CDO73185.1 124 CPICLSPP---AAPRMTKCGHIYCFPCILHLIstsdqPKWVRCPIC 166
                 9*******...9*********************99988999***** PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   7.5   1.7e-06    0.0025       3      47 ..     122     166 ..     120     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.7e-06
                 SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---.B-TTT CS
      zf-MIZ   3 lkCplslsrikiPvrgekCkHlqCfdlesylelnertetW.nCPvC 47 
                 l Cp+ ls+   P r  kC H+ Cf +   l +++ +++W +CP+C
  CDO73185.1 122 LSCPICLSPPAAP-RMTKCGHIYCFPCILHLISTSDQPKWvRCPIC 166
                 6899999998877.999***********************88**** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.9   2.6e-05     0.039       1      42 [.     124     172 ..     120     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk.dls......sCPlCqrrisk 42 
                  C +C + +  +++  CgH+ C  C  +    s      +CP+C   +++
   CDO73185.1 124 CPICLSPPAAPRMTKCGHIYCFPCILHLiSTSdqpkwvRCPICFDSVNE 172
                  99**********************98774333567799*****888765 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.0   2.8e-05     0.041      12      56 ..     122     166 ..     114     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                 SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC...TTTS-EE-SCCC- CS
      zf-Nse  12 lkCPltlqpfeePvtskkCpHvFEreaIleli...krkktvkCPvagC 56 
                 l CP+ l+p   P + +kC H++    Il+li   ++ k v+CP+  C
  CDO73185.1 122 LSCPICLSPPAAP-RMTKCGHIYCFPCILHLIstsDQPKWVRCPI--C 166
                 78***********.5689**************88888899****9..6 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.0    0.0005      0.74      14      54 ..     124     166 ..     114     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0005
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlkt.....rkvCPlc 54 
                 c+ c +p  +   + + +CgH + + Ci + ++t       +CP+c
  CDO73185.1 124 CPICLSPPAA---PRMTKCGHIYCFPCILHLISTsdqpkWVRCPIC 166
                 8888888887...6667*****************87665556***9 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.3    0.0025       3.7       2      29 .]     124     148 ..     123     148 .. 0.88
   2 ?    3.1   0.1     0.055        82       2      13 ..     163     174 ..     163     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0025
  zf-RING_11   2 CsICLeefkpgqalfilpCsHtFHfkCI 29 
                 C ICL++     a ++++C+H++ f CI
  CDO73185.1 124 CPICLSPP---AAPRMTKCGHIYCFPCI 148
                 99999976...567999**********9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.055
  zf-RING_11   2 CsICLeefkpgq 13 
                 C IC +++ + q
  CDO73185.1 163 CPICFDSVNERQ 174
                 *******98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4171.00
//
Query:       CDO73186.1  [L=532]
Description: hypothetical protein BN946_scf185007.g241 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-17   62.7   7.0    6.7e-17   61.7   7.0    1.6  1  Wbp11       WW domain binding protein 11
    1.2e-14   54.8   9.3    1.2e-14   54.8   9.3    9.0  6  NpwBP       mRNA biogenesis factor
  ------ inclusion threshold ------
      0.099   12.4   9.3      0.017   14.9   5.6    1.5  2  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
       0.45   10.9   2.9        0.8   10.1   2.9    1.4  1  Latarcin    Latarcin precursor
       0.78    8.6   7.4        1.1    8.1   7.4    1.1  1  Spc7        Spc7 kinetochore protein
        1.4    8.4   4.7        2.2    7.7   4.7    1.2  1  PBP_sp32    Proacrosin binding protein sp32
        4.8    5.6   5.5        6.4    5.2   5.5    1.0  1  LCD1        DNA damage checkpoint protein


Domain annotation for each model (and alignments):
>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   7.0   2.6e-20   6.7e-17       2      77 ..       3      77 ..       2      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.6e-20
       Wbp11  2 KslnPadaaRKaqrkkelkKnKker..qkareaklakkdpdeleeeiekLeelessgkldaadkkklekLekelkavk 77
                K +nPada+RKaqrkkelkK + +    + r+++l+kkd+++le+eiekL   e++  l+a +k++l++L++el++++
  CDO73186.1  3 KGVNPADAFRKAQRKKELKKARMDHlpLAPRDFALVKKDTRDLEDEIEKL---EARSDLSASEKSRLTELKSELEKIM 77
                789*******************99833589********************...7999******************985 PP

>> NpwBP  mRNA biogenesis factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   9.3   4.7e-18   1.2e-14       1      49 []     129     176 ..     129     176 .. 0.85
   2 ?    1.2   5.2      0.26   6.7e+02      33      49 .]     181     196 ..     177     196 .. 0.70
   3 ?   -4.8   1.2         7   1.8e+04      17      23 ..     199     205 ..     198     214 .. 0.74
   4 ?  -59.7  64.0         7   1.8e+04      20      27 ..     311     318 ..     247     383 .. 0.78
   5 ?   -3.5   0.4         7   1.8e+04      15      21 ..     395     401 ..     393     426 .. 0.68
   6 ?    3.2   0.2      0.06   1.5e+02      14      29 ..     490     511 ..     488     529 .. 0.59

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 4.7e-18
       NpwBP   1 PekSiYYdPvlNPlGkpPpgmPylektlk.yepp.seeesddpeiadiplP 49 
                 Pe+SiYYdP +NP+G+pPpgmPy e++l+ +e   + e sdd+   di++P
  CDO73186.1 129 PERSIYYDPIYNPYGVPPPGMPYVERPLLpTEVDsEPEGSDDD---DIVMP 176
                 9**************************9973331255667788...****9 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.26
       NpwBP  33 pseeesd..dpeiadiplP 49 
                 p+eeesd  d+   dip+P
  CDO73186.1 181 PEEEESDdsDD---DIPMP 196
                 46777774555...9***9 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 7
       NpwBP  17 pPpgmPy 23 
                 pPp++P 
  CDO73186.1 199 PPPPKPG 205
                 7888874 PP

  == domain 4  score: -59.7 bits;  conditional E-value: 7
       NpwBP  20 gmPylekt 27 
                 g+P ++++
  CDO73186.1 311 GFPVMSSP 318
                 44444433 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 7
       NpwBP  15 GkpPpgm 21 
                 G pPp++
  CDO73186.1 395 GGPPPPK 401
                 6677754 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.06
       NpwBP  14 lGkpPpgm......Pylektlk 29 
                 +G+pPp++      P +  + k
  CDO73186.1 490 FGVPPPKKakldiePAKAAPAK 511
                 8*****8755555654444433 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   5.6   6.5e-06     0.017      49     142 ..      40     192 ..       8     194 .. 0.75
   2 ?   -3.6   0.1         3   7.6e+03       5      24 ..     458     477 ..     425     488 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.5e-06
                 HHHS-HHHHHHHHHHHHHHHHH-------------------------------------..-----------------..................... CS
  Cwf_Cwc_15  49 lekrdlraeLeeaeaeakakkrkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee..................... 126
                 +++rdl +e+e+ ea++  + ++k++l++ ++e ++  +++ee+ +e+ ++rk  + ++++ +d+ d+++ee+++ ++                     
  CDO73186.1  40 KDTRDLEDEIEKLEARSDLSASEKSRLTELKSELEKIMQKKEEYVKEHPEHRK-LVFKSRKPADSRDDKKEESSAPKTrnlfkknglprhpersiyydp 137
                 589**************999999999999888767777777777666666666.35555556666555555544444479******************* PP

                 ..............................-----.........----------- CS
  Cwf_Cwc_15 127 ..............................eesdd.........dsdsdsddddd 142
                                               +++dd         ++++++d+ddd
  CDO73186.1 138 iynpygvpppgmpyverpllptevdsepegSDDDDivmpegpppEEEESDDSDDD 192
                 ********************99999888654444488888887544333333333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
                 XXXXXXXXXXX.XXXXXXXX CS
  Cwf_Cwc_15   5 hRPtfdpakGkealrgpskq 24 
                 + Pt  pa G +++++p +q
  CDO73186.1 458 AAPTIGPADGPDEEKEPPQQ 477
                 34666666666555555544 PP

>> Latarcin  Latarcin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.9   0.00031       0.8      33      80 ..      38      83 ..       8      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
    Latarcin 33 lRkvqgRLeemvenlrkvedledtEEARgafkklkdkfkkmgeklkkk 80
                ++k+   Le+ +e+l+++ dl+ +E +R    +lk ++ k+++k  ++
  CDO73186.1 38 VKKDTRDLEDEIEKLEARSDLSASEKSRL--TELKSELEKIMQKKEEY 83
                5666667*********************9..99********9997665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.4   0.00041       1.1     173     245 ..      39     110 ..      15     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00041
        Spc7 173 eeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 ++   +le+e+ekl++++ +l++++k +L el++el++++++ ee  ke+ e ++ + ++++  ++ +++k+e
  CDO73186.1  39 KKDTRDLEDEIEKLEARS-DLSASEKSRLTELKSELEKIMQKKEEYVKEHPEHRKLVFKSRKPADSRDDKKEE 110
                 556678999999999966.689999**************9999999999998888777766666666666655 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.7   0.00085       2.2     173     238 ..      46     112 ..      33     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00085
    PBP_sp32 173 lnnveel.lksslslggkekapeakpkeeqllekkqeqleehkteekkkqeeqeeeekeeeakqeeg 238
                 ++++e+l  +s+ls   k + +e k + e+ ++kk e+++eh+  +k   + ++  +  ++ k e++
  CDO73186.1  46 EDEIEKLeARSDLSASEKSRLTELKSELEKIMQKKEEYVKEHPEHRKLVFKSRKPADSRDDKKEESS 112
                 4567776358************************************988888877775555555554 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.5    0.0025       6.4      33     122 ..      40     140 ..      15     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHCCCHHCHHTTTTTT..H.HHH------..TT---SSS--THHHHHHHHH...............HHHTSTTT--TTHHHHHHH CS
        LCD1  33 eelekLkkevqkleDekkFlenElrslset..k.sqaskksae..edtdnsssvskKkRKieestaedaslsls......lkkkviklqketslffdsl 120
                 ++ + L++e++kle  +   + E+ +l+e   + +++++k++e  ++++++ ++  K RK  +s+++++++s++       kk+ +   +e s ++d +
  CDO73186.1  40 KDTRDLEDEIEKLEARSDLSASEKSRLTELksElEKIMQKKEEyvKEHPEHRKLVFKSRKPADSRDDKKEESSApktrnlFKKNGLPRHPERSIYYDPI 138
                 5678899****************99999986634555555544115555666666*******9998877666664444545555555555999999988 PP

                 HH CS
        LCD1 121 ll 122
                 ++
  CDO73186.1 139 YN 140
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1372  (0.0765241); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 3276.07
//
Query:       CDO73187.1  [L=138]
Description: hypothetical protein BN946_scf185007.g242 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 955.16
//
Query:       CDO73188.1  [L=442]
Description: hypothetical protein BN946_scf185007.g243 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0073   16.2   0.1      0.018   15.0   0.1    1.7  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   9.8e-07     0.018       2      47 ..      40      97 ..      39      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.8e-07
  F-box-like  2 srLPdEiLlqIF...........syLpps..dLlr.lalVCrrWrrvaldtplLWrrlvl 47
                 +LP E+ + I+            +++p+  ++   l lV+++ + va   pl++ r+ +
  CDO73188.1 40 KHLPSEVWSNILehtfalytpdgAFVEPRaaSWRVdLLLVSKDIHAVA--LPLFYARVHI 97
                69**********6655555555534655545677779***********..77****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 3026.48
//
Query:       CDO73189.1  [L=133]
Description: hypothetical protein BN946_scf185007.g244 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-45  154.3   9.4    3.5e-45  154.1   9.4    1.0  1  Aspzincin_M35  Lysine-specific metallo-endopeptidase
  ------ inclusion threshold ------
       0.92    8.3   9.9        1.3    7.8   9.9    1.4  1  Peptidase_M35  Deuterolysin metalloprotease (M35) family


Domain annotation for each model (and alignments):
>> Aspzincin_M35  Lysine-specific metallo-endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   9.4   3.9e-49   3.5e-45       8     145 .]       3     127 ..       1     127 [. 0.98

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 3.9e-49
  Aspzincin_M35   8 dtarfktwFgttdqstrskvaavfskiakeckslnsgsltyscsdvkgsCk.sevlAytvpsslnviylcpaffslpeltkkctgtdsqagtivHE 102
                    +++r++twFg++++s +++v ++++k++     +n+ s+ty+c+     C+ ++++Ay++p+++++iylc af+++p     +tgtds+ gt+vHE
     CDO73189.1   3 TSSRYTTWFGSYTSSHHNTVLSHYTKMNG----NNYSSFTYDCT-----CTdPSTYAYVYPDNFGHIYLCSAFWQAP-----TTGTDSKGGTLVHE 84 
                    689*************************9....7*********9.....*99*************************.....************** PP

  Aspzincin_M35 103 ltHftevagtdDiaygqsaakslaksnpsqAleNADsyeyFae 145
                    ++Hft ++gt+D+aygqs ak+l k++p++A++NAD++eyFae
     CDO73189.1  85 SSHFTCNGGTQDYAYGQSDAKNLTKKDPAEAIMNADNHEYFAE 127
                    *****************************************97 PP

>> Peptidase_M35  Deuterolysin metalloprotease (M35) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.9   0.00015       1.3     261     347 ..      45     128 ..       2     133 .] 0.63

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00015
                    -TT--EEEEGGGTEEEE-HHHHHH--SS--STT---HHHHHHHHHHT-TTTSSS--B----SHHHHHTS-HH...HHHTBHHHHHHHHH. CS
  Peptidase_M35 261 esnvlaytlpakniiancdiyysylpalartchaqdqatttlhefthapgvyspGtddlgyGydaatalsas...qallnadsyalfang 347
                    ++ + ay  p +       iy +     a t  +  +  t +he +h     + Gt+d++yG + a +l+ +   +a++nad +  fa+ 
     CDO73189.1  45 DPSTYAYVYPDNF----GHIYLCSAFWQAPTTGTDSKGGTLVHESSHFT--CNGGTQDYAYGQSDAKNLTKKdpaEAIMNADNHEYFAEN 128
                    4555566666532....23343333334455556677889999999986..589**********9999987522269**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 915.79
//
Query:       CDO73190.1  [L=352]
Description: hypothetical protein BN946_scf185007.g245 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-47  160.3   6.7    8.3e-47  159.4   6.7    1.5  1  Aspzincin_M35  Lysine-specific metallo-endopeptidase
    3.8e-09   35.9  10.6    1.9e-08   33.6  10.6    2.0  1  Peptidase_M35  Deuterolysin metalloprotease (M35) family
    0.00076   19.1   2.0       0.29   10.7   0.2    2.1  2  HRXXH          Putative peptidase family
  ------ inclusion threshold ------
        7.7    6.8  13.8       0.22   11.8   6.2    2.3  2  Flocculin      Flocculin repeat


Domain annotation for each model (and alignments):
>> Aspzincin_M35  Lysine-specific metallo-endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   6.7   1.8e-50   8.3e-47       3     145 .]     217     346 ..     215     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 1.8e-50
  Aspzincin_M35   3 aaaksdtarfktwFgttdqstrskvaavfskiakeckslnsgsltyscsdvkgsCk.sevlAytvpsslnviylcpaffslpeltkkctgtdsqag 97 
                    ++++ ++ r++twFg++++s++s+v ++f++++     ++++s+ty+c+     C+  +++Ay++p+++++iylc+af+++p     +tgtds+ g
     CDO73190.1 217 QSHTAASPRYTTWFGSYTSSRHSTVLSHFTNLNG----NDYTSFTYDCT-----CDeADTYAYVYPDDFGYIYLCGAFWQAP-----TTGTDSKGG 298
                    6789999**************************9....7*********9.....*999************************.....********* PP

  Aspzincin_M35  98 tivHEltHftevagtdDiaygqsaakslaksnpsqAleNADsyeyFae 145
                    t+vHE++Hft ++gt+D++ygqsaakslaks+ps+A+eNAD++eyFae
     CDO73190.1 299 TLVHESSHFTVNGGTEDYVYGQSAAKSLAKSDPSEAIENADNHEYFAE 346
                    **********************************************97 PP

>> Peptidase_M35  Deuterolysin metalloprotease (M35) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6  10.6   4.3e-12   1.9e-08       5     348 ..       5     348 ..       1     352 [] 0.70

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.3e-12
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX.XXXXXXXXX....X CS
  Peptidase_M35   5 tlasallalasnvlalpaetdespkldv..tlsqvdntrikavvkntGseevtfvhlnffr...daapvkkvslfreetev.efeGikrrl....r 90 
                    ++ ++l+al++++la+ ae + s k+    t+  v+n ++ +++ ntG e + ++  n  r    + p     +  ++ e  +f G+k ++     
     CDO73190.1   5 AVRATLIALVASALAVSAERGLSLKVSGpeTVDGVQNFKVTTTLTNTGDESLKLL--NDPRgalHTLPANTFDITTDSGERpSFIGVKVKYvpghA 98 
                    5677899*************99966653336889****************99875..55441115679999999888777527*****99833323 PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX-EEES--T CS
  Peptidase_M35  91 teGlteealttlaaGetledefdiastsdls..eGGavtirsdGfvpivtdgkvtGyipy.ksneleievdaakaaavtkalklldrrtkvascsg 183
                    ++   ++++t+la+Ge++    d++++ +++    G  t+    +   v  +     +      e ++   +++ a v +   +l++r     cs+
     CDO73190.1  99 ARSTNQKSFTVLAPGEAISVTHDLSTAYNFTlpGAGKYTVEPSNLFHYVDPET-HEPVEIrADREAHVAAVSGQLA-VVRPTPTLTKRESYNGCSS 192
                    56677899********9877777666655441144556666555554443332.2233320233444444444444.4455678************ PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHH..S-HHHHHHHHS---HHHHHHHHHHHHHHHHHHT-SB-SS-EEESS-SSS---TT--EEEEGGG.TEEE CS
  Peptidase_M35 184 sresalstalknavklanaaasaaes..GssskfeeyfkttssstrtsvaarlravakeasstssGsttyycndtyGycesnvlaytlpak.niia 276
                    s +s ++ a   a     +a s  +s    s ++  +f +  ss +++v + +  +  +       s ty c+      e+++ ay  p     i 
     CDO73190.1 193 SEKSGINAAAPAAQTYVANALSYLQShtAASPRYTTWFGSYTSSRHSTVLSHFTNLNGND----YTSFTYDCTCD----EADTYAYVYPDDfGYIY 280
                    *******99998887666666665551156779******999999999999998876544....44567777622....45666777765413466 PP

                    E-HHHHHH--SS--STT---HHHHHHHHHHT-TTTSSS--B----SHHHHHTS-H...HHHHTBHHHHHHHHH.. CS
  Peptidase_M35 277 ncdiyysylpalartchaqdqatttlhefthapgvyspGtddlgyGydaatalsa...sqallnadsyalfangk 348
                     c  ++      a t  +  +  t +he +h     + Gt+d+ yG +aa +l+    s+a+ nad +  fa+ +
     CDO73190.1 281 LCGAFWQ-----APTTGTDSKGGTLVHESSHFT--VNGGTEDYVYGQSAAKSLAKsdpSEAIENADNHEYFAENN 348
                    6776665.....44555667889999*****75..589***************8722257***********9865 PP

>> HRXXH  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   6.4e-05      0.29      47     123 ..     186     267 ..     151     280 .. 0.85
   2 !    8.2   0.1   0.00038       1.7     180     228 ..     300     346 ..     281     351 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.4e-05
       HRXXH  47 ihksCNaterrqlekaleetvelaahardhllrfGnsseiykkyFGd...aslaeviGvlekvvsadksdvlfrC..ddpdg 123
                  ++ C ++e++ +++a   +++ +a a + l  + + s  y+ +FG    +  ++v+ +++++  +d ++ ++ C  d+ d 
  CDO73190.1 186 SYNGCSSSEKSGINAAAPAAQTYVANALSYLQSHTAASPRYTTWFGSytsSRHSTVLSHFTNLNGNDYTSFTYDCtcDEADT 267
                 4689******************************************977667789999999999999999999751155554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00038
       HRXXH 180 llHRlfHvpaigegvvehyaeeyeevlelakknateavrdsdtllyyal 228
                 l+H   H +   +g  e+y+       +lak++ +ea++++d+  y+a 
  CDO73190.1 300 LVHESSHFTV--NGGTEDYVYGQSAAKSLAKSDPSEAIENADNHEYFAE 346
                 5666666542..455688888999999********************95 PP

>> Flocculin  Flocculin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.8       1.2   5.5e+03      20      26 ..      45      51 ..      42      55 .. 0.54
   2 ?   11.8   6.2   4.8e-05      0.22       5      36 ..     226     258 ..     223     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
   Flocculin 20 itTvtgs 26
                +tT t++
  CDO73190.1 45 TTTLTNT 51
                4444443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.8e-05
   Flocculin   5 ttpWtgtyt.sTySTsitTvtgsdGneTTeTIY 36 
                 +t+W g+yt s  ST ++ +t+ +Gn  T  +Y
  CDO73190.1 226 YTTWFGSYTsSRHSTVLSHFTNLNGNDYTSFTY 258
                 9******661569****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2443.42
//
Query:       CDO73191.1  [L=582]
Description: hypothetical protein BN946_scf185007.g246 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-11   42.8   0.6    3.9e-10   40.6   0.1    2.3  2  Metallophos    Calcineurin-like phosphoesterase
    0.00092   19.4   0.1      0.013   15.7   0.1    2.5  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   4.4e-14   3.9e-10       1     204 []     159     415 ..     159     415 .. 0.70
   2 ?   -2.9   0.0      0.89     8e+03      92     124 ..     468     504 ..     455     544 .. 0.61

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 4.4e-14
                  EEEEEEESBTB........................................TTCCTHHHHHHHHHHHH.....HHHTTESEEEEESTSSSSS...... CS
  Metallophos   1 lrilvigDlHl........................................algggqlddllkllddl.....lreekpdlvllaGDlvdrg...... 47 
                  l++l+++D+Hl                                         l++ +l+ ++ +l+ +      ++ + d+ l +GDlv +       
   CDO73191.1 159 LKVLHLSDMHLdpryangaeanctsglccrennfntqnpnetlvpaprfgaYLCDSPLSLIVSALESIpvlagTERTGFDFTLYTGDLVSHDsenqls 256
                  69*********************************************99999999999999999999977766333589************9888555 PP

                  .HHHHHHHHHHHHHHHH........TSEEEEEC-TTS............CHHHHHHHHHHHHHHH..HHHHEHHHCEEETSEEEEEETTE........ CS
  Metallophos  48 .dlekellellaalvky........pipvylllGNHe............gfeeellnkygylgif..sepwrsdaevfnnlplaslgsgs........ 114
                   d    ++ + ++ ++y          pvy++lGNH+            g   + l ++ +++++  +++w+++    ++lp ++             
   CDO73191.1 257 rD----YILY-TETIMYdllkrklgTGPVYAALGNHDsynqaqdaphslG---GQLAQQFSWNYDhvAALWKQE----GWLPESAVDLARshyaaymv 342
                  52....4444.4444444455557789**********9999999877662...333333333333448888888....88888884444333443111 PP

                  .....EEEEEEESECEEETHHHHHHHHHHHSCHHHHCC.HHHHHH....HHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 115 .....lkvlllhGgspellvsldklgslnleleapepg.dewlkd....lekrekadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHtH 202
                       l+v++l+ +       l +  ++   ++++ +g   +l d     e+ ++a + iv   sp+                     ++++++GHtH
   CDO73191.1 343 rrqdgLRVITLNTD-------LANYFNYINMTNPDVSGmLRFLTDelqaAEDAGDAVYQIVDRFSPHV--------------------IKAIFFGHTH 413
                  11333344444443.......33333333334444444766666666556777777777777777777....................********** PP

                  SE CS
  Metallophos 203 vy 204
                  ++
   CDO73191.1 414 ED 415
                  85 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.89
                  HHHHEHHHCEEETSEEEEEETTE....EEEEEEESEC CS
  Metallophos  92 sepwrsdaevfnnlplaslgsgs....lkvlllhGgs 124
                  + +w+sd++ f  l  +  ++ +    + +  ++Ggs
   CDO73191.1 468 AYTWKSDVNSFPQLDGQTAIGPTyeyeYSTREAYGGS 504
                  6778888777777777775555556666666666662 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.17   1.5e+03       2      11 ..     160     169 ..     159     195 .. 0.80
   2 !   15.7   0.1   1.4e-06     0.013      20     132 ..     229     417 ..     219     436 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.17
  Metallophos_2   2 klaiiSDlHs 11 
                    k++++SD+H 
     CDO73191.1 160 KVLHLSDMHL 169
                    89*******2 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.4e-06
  Metallophos_2  20 lealkevgvdaiihaGDl...eeeep............evleellela....pvlaVrGNnDeevveedvlreaaelgtdl............... 81 
                    l+  +++g d  + +GDl                    +++++ll+++    pv+a  GN+D     ++ +++++ lg++l               
     CDO73191.1 229 LAGTERTGFDFTLYTGDLvshDS--EnqlsrdyilyteTIMYDLLKRKlgtgPVYAALGNHD---SYNQAQDAPHSLGGQLaqqfswnydhvaalw 319
                    56667788888899999654322..124677777776569999999999*************...4455555555555555333333333333333 PP

  Metallophos_2  82 ....peeaelelagek....vlliHgdpl...............................................gvkdalaellkeaeegsd.. 120
                                        v+l +++                                                 +++ +  + + +  +++   
     CDO73191.1 320 kqegW----------LpesaVDLARSHYAaymvrrqdglrvitlntdlanyfnyinmtnpdvsgmlrfltdelqaaEDAGDAVYQIVDRFSPHVik 405
                    33330..........144443333333224444444468999999999999999999999999999999999988866666777777778888888 PP

  Metallophos_2 121 vvvcGHtHvpev 132
                     +++GHtH+ +v
     CDO73191.1 406 AIFFGHTHEDQV 417
                    9*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3969.25
//
Query:       CDO73192.1  [L=591]
Description: hypothetical protein BN946_scf185007.g247 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-34  118.5   0.0    5.5e-19   68.4   0.0    2.2  2  NAT       NAT, N-acetyltransferase, of N-acetylglutamate synt
  ------ inclusion threshold ------
       0.18   10.6   0.0       0.27   10.0   0.0    1.1  1  CRF-BP    Corticotropin-releasing factor binding protein (CRF


Domain annotation for each model (and alignments):
>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   6.1e-23   5.5e-19      12     116 ..     379     487 ..     375     492 .. 0.93
   2 !   47.5   0.2   1.6e-16   1.5e-12     119     153 ..     511     545 ..     506     563 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 6.1e-23
                 SSEEEE---XEEEESSCCCSSXCCHHHHHHTTSTTTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE.....EXSS.....SSXEEEEEEEXHHHHHTTH CS
         NAT  12 agtlirrGlkvitvkslkelidlekLksliedsfkrkldvkdYldrlkgkiakiyiaedyeglAivtwedpkeek.....evayLdkFavlkssqgsgv 105
                  +tl+rrGl+++  +s +++ d  k+ksl+e+sf+r+l+ + + +r+++ +  +++a+dy g+Aivt e+  + +      + yLdkFavl+s+qg g+
  CDO73192.1 379 TPTLLRRGLPIHVLRSVDSI-DKAKMKSLLEKSFRRQLNEEAFWERMERDLDFVIVAGDYAGAAIVTREQCPPGTpraiaPITYLDKFAVLPSHQGDGT 476
                 57*****************9.***********************************************997766678887999**************** PP

                 HHHHHHHHHHH CS
         NAT 106 sdvvfkalkkd 116
                  d ++ al ++
  CDO73192.1 477 VDFLWVALHDE 487
                 ******99655 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 1.6e-16
                 SEEEEEETTXTTHHHHHHCXSEEEEETTEEEEEES CS
         NAT 119 kLvWrsrednpvnkWyfersdGslkksqwvlfWyG 153
                 +LvWrsr+dnpvnkWyfers+G l+++ wvlfW  
  CDO73192.1 511 DLVWRSRADNPVNKWYFERSTGHLRQGDWVLFWCD 545
                 59*******************************75 PP

>> CRF-BP  Corticotropin-releasing factor binding protein (CRF-BP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0     3e-05      0.27      30      81 ..     397     448 ..     384     452 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3e-05
      CRF-BP  30 easedelllllnselkrelseeelyrrslrcldmlsveGqftftadrpqlkc 81 
                  + + ++ +ll+++++r+l+ee  + r  r ld + v G ++ +a   + +c
  CDO73192.1 397 SIDKAKMKSLLEKSFRRQLNEEAFWERMERDLDFVIVAGDYAGAAIVTREQC 448
                 455678899*******************************998886666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4263.08
//
Query:       CDO73193.1  [L=350]
Description: hypothetical protein BN946_scf185007.g248 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2538.94
//
Query:       CDO73194.1  [L=311]
Description: hypothetical protein BN946_scf185007.g249 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-52  174.0   6.6    1.3e-19   69.9   0.1    4.0  4  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.9    0.0062   1.1e+02       4      22 ..      17      35 ..      14      40 .. 0.80
   2 !   36.2   0.0   2.4e-13   4.3e-09      45      93 ..      41      89 ..      36      92 .. 0.90
   3 !   66.0   0.0   1.2e-22   2.2e-18       2      94 ..     100     212 ..      99     214 .. 0.94
   4 !   69.9   0.1     7e-24   1.3e-19       3      94 ..     221     308 ..     219     310 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0062
                HHHHHHHHHHHHHHHHHHH CS
   Mito_carr  4 svlkellaGglagavatlv 22
                + +++++aGg++g++a+lv
  CDO73194.1 17 ESVRSFVAGGAGGVAAVLV 35
                5689999**9999988876 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 2.4e-13
                CSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 45 saaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                +++++dv+kk +  +G++glyrG++p ll+v+p  a+ f++y+t k l+
  CDO73194.1 41 YTGAVDVVKKALARDGVKGLYRGVVPPLLGVTPIFAVSFWAYDTSKLLI 89
                45599***************************************99887 PP

  == domain 3  score: 66.0 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....................CCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqt....................qkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasa 80 
                 els+ +  +aG l+++ +tlvt+P++++K+ lq+                    q++ +   ++++++dv+k++y+e Glr+ +rG  +++ r  p sa
  CDO73194.1 100 ELSIPELAAAGFLSAIPTTLVTAPVERAKVLLQVrdvawatvsdarilthspkiQGQGQGGPQYSGVFDVVKHLYREGGLRSVFRGSAATVARDGPGSA 198
                 567778899****************************************99999888888888888********************************* PP

                 HHHHHHHHHHHHHC CS
   Mito_carr  81 lkfvlyetlkrlll 94 
                 ++f++ye++k+ll+
  CDO73194.1 199 AYFAAYEVTKKLLT 212
                 ***********986 PP

  == domain 4  score: 69.9 bits;  conditional E-value: 7e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 l++ + ++aGg+ag + ++++ P dv+K r+q++++ + +    +++d+ +k++  eG+++l++Gl+p++ r +pa+a++f+  e +k+l+ 
  CDO73194.1 221 LNLGAVIVAGGMAGFAMWSIAIPPDVLKSRIQSAPTGTYS----GFMDCARKTIAAEGVAALWKGLGPAMARAFPANAATFLGVEATKKLMD 308
                 56778899***************************99765....3********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2079.82
//
Query:       CDO73195.1  [L=802]
Description: hypothetical protein BN946_scf185007.g250 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-62  207.5   0.0    1.8e-15   57.3   0.0    5.3  5  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   9.8e-10   1.7e-05       3     126 ..      47     213 ..      45     216 .. 0.67
   2 !   57.3   0.0     1e-19   1.8e-15      14     128 .]     239     353 ..     227     353 .. 0.86
   3 !   42.1   0.0     5e-15     9e-11       3     128 .]     370     505 ..     368     505 .. 0.83
   4 !   52.8   0.0   2.5e-18   4.4e-14       2     128 .]     518     652 ..     517     652 .. 0.88
   5 !   23.5   0.0   2.9e-09   5.3e-05       3      70 ..     668     746 ..     666     760 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9.8e-10
                 GHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCC..........HHHHHHHHHT.CHHHHHHHHHTTEEESSS-HHHHHHH.............HE CS
   Fasciclin   3 lstfvsllekaglaeeLnkkdgglTvFaPtneAfakl..........ppellaklln.dkkklkeiLkyHvvpetvsssalkka.............se 77 
                 +  +++ll++a+l  +L +k  + T+FaPtn+A+++           ++e    l +  +  l++ L yH+++ t+     +k+             + 
  CDO73195.1  47 YVSLIALLQRAKLIPTL-NKINSSTFFAPTNDAIKRHssfnplwsyaSSEDAHVLADnLQLRLRQELFYHLLNYTLPIVPTEKTpqehktllyprdyT- 143
                 557899***********.6669************6665666666665444444444445677899999***999997776666644455555555550. PP

                 E...................EECCTTSSEEEEEEEGGTT......EEEETTEEEEEEEEEEESSEEEEEESS-T CS
   Fasciclin  78 t...................latllegaklrvniekgng......tvtvngkarvvrsdieatngvihvidkvL 126
                 +                   l +  e ++lr++++  ++      +   ng a+vv+ +++++ng++  + +vL
  CDO73195.1 144 EppsqepppyppwmpypngtLGS--EPQRLRLSYR--DDavwagvDASGNGGAKVVKDQVQTANGLLLGLGEVL 213
                 05555556666665554321444..7778888888..4423333344445599999999999999999988888 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 1e-19
                 TCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEES.SS.-HHHHHHHHEEEECCTTSSEEEEEEEGGTTEEEETTEEEEE CS
   Fasciclin  14 glaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpe.tv.sssalkkasetlatllegaklrvniekgngtvtvngkarvv 108
                 +l   L +++  lT+F P +eA++kl+p ++  l++    ++l++iL++H v   +v  s++++++  +l+t  +g +l+v  + ++++v+v + a +v
  CDO73195.1 239 ELSRFL-NSTPTLTLFLPVDEAWQKLDPYERLYLESefAADDLTQILNMHAVLLdEVkWSDSFVEKAVNLTT-IHGRQLTVVPT-EDHKVKVSE-ADLV 333
                 355566.55589**********************99**************9865544378888888799999.********999.899******.**** PP

                 EEEEEESSEEEEEESS-TSX CS
   Fasciclin 109 rsdieatngvihvidkvLlp 128
                 ++d+  +ngv+h+++++L+p
  CDO73195.1 334 ERDVYGSNGVLHTVSSLLVP 353
                 ******************98 PP

  == domain 3  score: 42.1 bits;  conditional E-value: 5e-15
                 GHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSS.........EEEEEE CS
   Fasciclin   3 lstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellakllndkkklkeiLkyHvvpetvsssalkkasetlatllega.........klrvni 92 
                 +++fvsl+ + +l+  +n+ + ++T++aP+++ ++ ++ + l    +++++lk++L+yH++p+++s ++l++    l+t+le            ++v++
  CDO73195.1 370 CTEFVSLIHSVNLTYLINDPKAEYTILAPNDDVLKLFGHHDLPH--RGSDELKRVLQYHFIPGKWSPKKLEDR-MLLETALEEPgldggrqvmAIEVTE 465
                 89****************9999************8887777776..4*************************9.6666644444456668877778887 PP

                 E....GGTTEEEETTEEEEEEEEEEESS.EEEEEESS-TSX CS
   Fasciclin  93 e....kgngtvtvngkarvvrsdieatn.gvihvidkvLlp 128
                 e    ++++++++ g a v+   +e  n  +++ i++ L+p
  CDO73195.1 466 EgkkkDQSKSIRFAG-AGVMGEPVEIGNhTMVYFISRPLVP 505
                 787666666999999.9999666655553899*****9998 PP

  == domain 4  score: 52.8 bits;  conditional E-value: 2.5e-18
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH.HEEEECCTTSSEEEEEEEGGTT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka.setlatllegaklrvniekgng 97 
                 d+stfv+ + +++lae+L k + + T+++P n+Af++l+    + ll+  +k++ ++++++Hv+++  ++++l+++ ++t+ t leg++l+v+++ +n 
  CDO73195.1 518 DYSTFVAGIFSTNLAETL-KAKPRTTLLMPPNDAFRRLGMLVSSHLLSssSKADFERVIRHHVIEGVEYADSLVNGsQRTFGT-LEGSDLHVERRGSNR 614
                 689***************.6668***************9999999988889***********************995566777.***********4444 PP

                 EEEETT.......EEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  98 tvtvng.......karvvrsdieatngvihvidkvLlp 128
                 +v+++        ++++  +d+ ++ g+ih + ++++p
  CDO73195.1 615 SVVFTPsggwpdmQSELNPRDMLTKTGAIHEVLDIMIP 652
                 4444446999*9999*****************999987 PP

  == domain 5  score: 23.5 bits;  conditional E-value: 2.9e-09
                 GHHHHHHHHTTTCCCCCTCSSS...............SEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEESSS-HH CS
   Fasciclin   3 lstfvsllekaglaeeLnkkdg...............glTvFaPtneAfaklppellakllndkkklkeiLkyHvvpetvsss 70 
                  +t+ +++ kagl   Ln++                 g T+++Pt++Af+k+   +l++l+ +++ l++i+  H++p   sss
  CDO73195.1 668 ATTMTTMMVKAGLGWILNGT-AppegspwadmglkgsGWTLLCPTDDAFKKV---NLTELYVNEDRLRAIVSQHLIPTPSSSS 746
                 57888888888888888522.2344455555556666************888...8999999**************9855554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5328.03
//
Query:       CDO73196.1  [L=1392]
Description: hypothetical protein BN946_scf185007.g251 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-202  674.1   0.0   2.4e-202  673.8   0.0    1.1  1  Rav1p_C   RAVE protein 1 C terminal


Domain annotation for each model (and alignments):
>> Rav1p_C  RAVE protein 1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  673.8   0.0  1.3e-206  2.4e-202       8     638 .]     636    1278 ..     629    1278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 673.8 bits;  conditional E-value: 1.3e-206
     Rav1p_C    8 akvdkekkklewletseletgieepslisgsslkkvavv..desrseLsiwdlksgvl....eyeeefeeedsikdldwtstpdsqsilavgFekkv 98  
                  a+ ++e++k+ w+ t  ++tg +  +++++ss kk  +v    +++eL+iwd+k++++    ey+     +d+i+dldwt tpd+qsilavgF +++
  CDO73196.1  636 ANGKQEEEKAIWKCTGMVRTGRKGLTMARCSSAKKSVLVvpTPDGEELTIWDSKESEFslglEYRALL--SDAINDLDWTATPDGQSILAVGFAHRI 730 
                  55578899999**********************88777768899*************98888888888..9************************** PP

     Rav1p_C   99 llltqlRydylnkgps.waairkidireltpheigdsiWlkdgtLvvaaGnqlfikdkklelelkkksessikskkeksvdlfelvselngpLpvyH 194 
                   ll+q+R  y++++p+ w    k+++  + ph+i+dsiWl +gtL v+aG qlf++++k e            + k ++ +lfe v++lngpL  +H
  CDO73196.1  731 ELLCQQRATYFDERPAgWSVCWKVELGGMVPHPISDSIWLARGTLLVGAGHQLFMFGQKRER-----------EGKIEEESLFEHVARLNGPLDDWH 816 
                  *************9876****************************************99888...........45566789**************** PP

     Rav1p_C  195 PqfLiqlilagklelvkeillkLfkklkflsedeeldsllelelekflkedekkksk.kkeae.s.laeeekeeeeeevevfdeevaksLaekLkki 288 
                  Pq++ q++l++k+elvk+i+++L ++++    ++++++  +l++ekfl++d++++++  ++ + s l +  + +eee+++ f++ v+++L ++L+++
  CDO73196.1  817 PQMILQCLLWEKIELVKSIIVNLARNVES---GRNIHEWENLPIEKFLQRDDEARANaAHRPKySlLFDIPEGKEEEDEDPFSSGVVRKLLDRLEEK 910 
                  ***********************987765...99******************9993322222224577789999999******************** PP

     Rav1p_C  289 klpqLtrheqitLvnvveaveevekerrslDenglrfllglklfllrkkee....................eqkelslRdiswAlhSdsqeiLldlv 365 
                   +p+L+ +e  +L+ ++++  e+e++rr lD+nglr+l+ ++ f   ++++                    ++++l +Rd+ wA+hSdsqe+Ll++ 
  CDO73196.1  911 PIPHLSPNENASLLVLIQTALEIEEHRRALDSNGLRYLISMRSFYILNSRAsepntpssapngtaalrqlkRRERLRYRDMLWAFHSDSQELLLATS 1007
                  ******************************************999877777556666666666665555555555********************** PP

     Rav1p_C  366 erqlknkllWeaarelglfmWlkdsealrkqfeeiArneytkseerdPvkcslfYlALkKkqvlqgLWriaswhkEqkktlkfLsndFseprwktaA 462 
                  ++++++k+ W +ar+lg+f+Wl+++e+ r+++e +Arney+  + rdP+ cslfY+AL+K +++ gLWr+a whkEq+ tlkfL ndF+ep+w+taA
  CDO73196.1 1008 MTACGGKMCWADARALGVFTWLRSAESTRAHMEVVARNEYMAGDVRDPTACSLFYFALGKVKLVHGLWRQAAWHKEQQVTLKFLGNDFKEPKWRTAA 1104
                  ************************************************************************************************* PP

     Rav1p_C  463 lKNAfaLlskrRyeyAAaFFLLadslkdavnvllkqlkdlqLAiavarvyeg.ddgpvLkelleeevLpeAvkegdrWlaswafwmlkrrdlavraL 558 
                  lKNAfaLlskrR+eyAAaFFLL++slkdavnv+l++l+d qLA+a+arv e  ddgp+L+++l+++v+p A+k+g+rWlaswafw l+rrdl+vr+L
  CDO73196.1 1105 LKNAFALLSKRRFEYAAAFFLLGGSLKDAVNVCLRNLQDWQLAVALARVVEQgDDGPILRDVLRNTVIPLAFKDGNRWLASWAFWLLHRRDLSVRIL 1201
                  ************************************************98755******************************************** PP

     Rav1p_C  559 vtpleelleekkkeeakseksksflkdDPalvlLYkqLrkkslqtlkgalkvsekeeyefvlrvarlydrmGcdllaLsL 638 
                  vtpl+++ +    + +  ++      dDP+l+lL++qL++k+lqt +g++++s ++e++fvl+ ar+++rmGc++laL+L
  CDO73196.1 1202 VTPLQDMATAV--DVPI-TEIGDPHYDDPSLALLFSQLKSKTLQTAQGTSEISGRTEFNFVLQIARVFCRMGCHVLALDL 1278
                  ******99865..3333.34455567****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 8840.64
//
Query:       CDO73197.1  [L=449]
Description: hypothetical protein BN946_scf185007.g252 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.7e-223  739.6   0.0     1e-222  739.4   0.0    1.0  1  GDI       GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  739.4   0.0  5.6e-227    1e-222       1     435 [.       1     444 [.       1     445 [. 0.99

  Alignments for each domain:
  == domain 1  score: 739.4 bits;  conditional E-value: 5.6e-227
                 XXXEECEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHH-TTHHHHHHH--GGG--EESS--BEETTSHHHHHHHHTTGGGCS CS
         GDI   1 mdeeydvivlGtGlkecilsGllsvdgkkvlhldrndyyGgesasltleqlyerfkleekpeeklGkdrdwnvdlipkfllanGelvkiliktdvtryl 99 
                 mdeeydvivlGtGl+ecilsGllsv+gkkvlh+drndyyGg+sasl+l+qly++f+++++p+  lG+drd++vdlipkf++a+Gel++il++tdvtryl
  CDO73197.1   1 MDEEYDVIVLGTGLTECILSGLLSVEGKKVLHMDRNDYYGGDSASLNLTQLYRKFRPDQTPPADLGRDRDYAVDLIPKFIIASGELTRILVHTDVTRYL 99 
                 9************************************************************************************************** PP

                 -EEE-SEEEEEETCEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHH-BTTBGGGSTT--TTTSBHHHHHHHCT--HHHHHHHHHHTS--SSSGGGG CS
         GDI 100 efkaveGsyvykegkiakvpanelealaspllglfekrrakkfleyvseyeeddpktyedldlkkatmkevykkfdlsedtkdfiGhalalyrdddylk 198
                 efk+++Gs+vy++gki kvp++e+ea++spl+glfekrrakkf+e++++++eddp+t+++ldl+k+tm +vy+kf+l+  t+dfiGha+aly+dddy +
  CDO73197.1 100 EFKQIAGSFVYRDGKISKVPSTEMEAVKSPLMGLFEKRRAKKFFEFLQNWKEDDPNTHQGLDLDKNTMAQVYEKFGLEPGTQDFIGHAMALYLDDDYKT 198
                 *************************************************************************************************** PP

                 SBCHHHHHHHHHHHHHHCCCSS-SEEEETT-TTHHHHHHHHHHHHTT-EEETS--ECEEEE-TTS-EEEEEETTEEEEECEEEE-GGG-C.......CC CS
         GDI 199 qpaletleriklyaeslarygkspylyplyGlGelpqgfarlsaiyGGtymlnkpvdevvldedgkvvGvkseeevakakkvicdpsylp.......ek 290
                 +pa+ t eri ly++s+arygkspy+yplyGlGelpq+farlsaiyGGtyml+kp+de+v d dgk+vGv+s++e++kak+v++dpsy+        +k
  CDO73197.1 199 KPARPTYERIVLYTSSMARYGKSPYIYPLYGLGELPQAFARLSAIYGGTYMLDKPIDEIVTDADGKFVGVRSGNETVKAKQVVGDPSYFGagkstegGK 297
                 *****************************************************************************************8888888878 PP

                 EEEE..EEEEEEEEEESS--TTSTT-SSEEEEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEE--SS-HHHHTHHHHHTT-SECEEEEEEEEEE CS
         GDI 291 vrkv..gkviraicilshpipntddadsvqiiipqkqlgrksdiyvalvssahnvaakgkylaivsttvetenpevelepalellgpieekfvkisdly 387
                 vr v  gkv+raic l+hpip tddads qiiipq+q+gr++diy+a+vss+hnv+ak+ y+aivst+vet++pe+e++p+l+llgpi +kfv++s ly
  CDO73197.1 298 VRVVeeGKVVRAICFLKHPIPGTDDADSAQIIIPQNQVGRRNDIYIAMVSSTHNVCAKDVYVAIVSTIVETDRPEQEIAPGLQLLGPIYDKFVSVSSLY 396
                 8876337******************************************************************************************** PP

                 EESSSSTTTSEEE-----S-SBSHHHHHHHHHHHHHHHSS-------- CS
         GDI 388 epvedgskdnifisksydatshfettvedvkdiykrltGkkldlkeke 435
                  p++ g++dnifi++sydatshfet+v+dv+d+++r++Gk+l lk+++
  CDO73197.1 397 TPTSSGQSDNIFITRSYDATSHFETVVDDVHDVWRRMMGKDLTLKKRN 444
                 ********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3105.72
//
Query:       CDO73198.1  [L=531]
Description: hypothetical protein BN946_scf185007.g253 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-163  542.0   1.2   6.3e-163  541.6   1.2    1.1  1  PK         Pyruvate kinase, barrel domain
    7.9e-38  129.3   0.1    3.3e-37  127.3   0.0    2.2  3  PK_C       Pyruvate kinase, alpha/beta domain
    5.6e-05   22.4   0.7    0.00022   20.5   0.6    1.9  2  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
     0.0041   16.2   0.1      0.051   12.6   0.0    2.1  2  IMPDH      IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.6   1.2  1.4e-166  6.3e-163       2     344 ..      32     374 ..      31     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: 541.6 bits;  conditional E-value: 1.4e-166
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS..-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SC CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkk..vaillDtkGpeirtgllkdgkkdielkegdklkvslde 98 
                 r+t+i++t+GP++++vekl++l++aG+n+vr+nfshG +  h+++i+n r+a+   ++   +ai+lDtkGpeirtgl++dg  di +++g++++vs+d 
  CDO73198.1  32 RKTSIIATIGPQTNTVEKLAELRRAGVNIVRMNFSHGAYAFHKSVIDNTRKAVSLDPEGrpIAIALDTKGPEIRTGLMRDGM-DIAIQAGHEFIVSTDP 129
                 89**************************************************988765557*******************88.**************** PP

                 TCTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETT CS
          PK  99 klkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasf 197
                 k+k+ +d++++++dykn+ k++ +Gk i+vdDG+lsl vl v+ ++ ++v++ n+g+l+s+kgvnlp t+vdlpalsekDkadl+fgv++gvd+i+asf
  CDO73198.1 130 KYKDICDDKILYMDYKNLPKVTAPGKLIYVDDGILSLLVLGVEGDN-VRVRALNNGTLSSRKGVNLPKTDVDLPALSEKDKADLQFGVQNGVDMIFASF 227
                 ********************************************99.**************************************************** PP

                 E-SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HH CS
          PK 198 vrkasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptra 296
                 +r+a+Dv+e+r+vl+++g++ikii kien++gv+n+deil ++Dg+mvarGDlGieipa++v+l+qk++i+kcn+agkpvi+atqmlesm++nPrptra
  CDO73198.1 228 IRRAEDVREIRRVLGPDGSNIKIIVKIENEQGVANFDEILAETDGVMVARGDLGIEIPASQVFLAQKMMIAKCNKAGKPVIVATQMLESMTYNPRPTRA 326
                 *************************************************************************************************** PP

                 HHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS-H CS
          PK 297 evsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalke 344
                 evsDvanav+DG+D+vmLsgetakG+yP+++v +mae++l ae+a+ +
  CDO73198.1 327 EVSDVANAVMDGADCVMLSGETAKGAYPIQSVLMMAETCLLAEAAICY 374
                 *******************************************99865 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   6.7e+03      42      42 ..      61      61 ..      29     120 .. 0.62
   2 ?   -2.9   0.0       1.7   7.7e+03      33      46 ..     298     312 ..     291     351 .. 0.62
   3 !  127.3   0.0   7.3e-41   3.3e-37       1     117 []     393     514 ..     393     514 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                E CS
        PK_C 42 i 42
                +
  CDO73198.1 61 V 61
                2 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
                 HHT-TS.SEEEEEES CS
        PK_C  33 skyrpk.vpiiavtp 46 
                 +k+++   p+i+ t+
  CDO73198.1 298 AKCNKAgKPVIVATQ 312
                 444444444444444 PP

  == domain 3  score: 127.3 bits;  conditional E-value: 7.3e-41
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH.........TTSHHHHHHHHHHHTTSS-S CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekakt......aestdellreavkvakeaglvkk 93 
                 e++a aav+aa+e++a+aI+vl++sG+tArliskyrp vpii vt+n++tarq++l+rG+yp+ +++ +       ++++d+++r +++ a++ +++++
  CDO73198.1 393 ETVAIAAVAAASEQNASAIIVLSTSGNTARLISKYRPAVPIITVTRNQQTARQIHLHRGCYPFWYPEPRGiephqwQTDVDNRIRFGLRNALKLNIIET 491
                 79***************************************************************98777***************************** PP

                 TSEEEEEE-SSSS..SS--EEEEE CS
        PK_C  94 gdevvvtaGtpkgesgttNtlrVv 117
                 g +vv+++G++ g  g+tNtlr++
  CDO73198.1 492 GTTVVAVQGWKGG-LGHTNTLRIL 514
                 ***********99.********96 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.6   4.8e-08   0.00022      75     162 ..     209     288 ..     199     341 .. 0.76
   2 ?   -1.0   0.0      0.18   8.2e+02      15      32 ..     332     349 ..     324     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.8e-08
                 HHHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TT CS
   HpcH_HpaI  75 kqdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkr 162
                 k dl+  ++ g++ +   ++  ae+++e+ ++l            ++++++ iE ++gv n +eI+a  + dgv+++  Dl  ++ +++
  CDO73198.1 209 KADLQfGVQNGVDMIFASFIRRAEDVREIRRVLGPDG-------SNIKIIVKIENEQGVANFDEILA--ETDGVMVARGDLGIEIPASQ 288
                 5667778889999999999999999999999887666.......9********************95..45677777888877776666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
                 HHHCTC--SEEEEESSTS CS
   HpcH_HpaI  15 ekaaiagaDsvliDlEda 32 
                  +a + gaD v++ +E a
  CDO73198.1 332 ANAVMDGADCVMLSGETA 349
                 678899*******99977 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.1e-05     0.051      88     143 ..      29      84 ..      12      91 .. 0.88
   2 ?    1.0   0.1     0.039   1.7e+02     219     236 ..     328     345 ..     325     354 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                 XTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  88 dekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkv 143
                 + +++  + a++g ++++ e++++l +agv+++ ++ +hg  +   +++++ +k+v
  CDO73198.1  29 KFHRKTSIIATIGPQTNTVEKLAELRRAGVNIVRMNFSHGAYAFHKSVIDNTRKAV 84 
                 556778889********************************999999999998876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.039
                 HHHHHHHHHTT-SEEEES CS
                 xxxxxxxxxxxxxxxxxx RF
       IMPDH 219 sgdivkAlaaGadavmlG 236
                   d++ A+  Gad+vml 
  CDO73198.1 328 VSDVANAVMDGADCVMLS 345
                 579*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.47
# Mc/sec: 3393.49
//
Query:       CDO73199.1  [L=737]
Description: hypothetical protein BN946_scf185007.g254 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-05   24.4   0.0    7.9e-05   23.2   0.0    1.5  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
       0.12   11.7   0.2       0.19   11.1   0.2    1.2  1  Caps_synth      Capsular polysaccharide synthesis protein


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.8e-09   7.9e-05      58      87 ..     498     527 ..     473     537 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 8.8e-09
  Gly_transf_sug  58 ialsDllRlaiLykyGGiYlDtDvivlksl 87 
                     + lsD++R+ +  ++GGiYlD D+i+l++ 
      CDO73199.1 498 VILSDMARFILCHRFGGIYLDADTILLRDW 527
                     468************************987 PP

>> Caps_synth  Capsular polysaccharide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.1e-05      0.19     112     153 ..     499     540 ..     496     584 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
  Caps_synth 112 hfSDllRleLLkkyGGvWiDaTifltkklpsellkkdfftfk 153
                  +SD+ R+ L +++GG+ +Da + l ++ ++    k  f ++
  CDO73199.1 499 ILSDMARFILCHRFGGIYLDADTILLRDWEELWGWKGAFAYR 540
                 58*******************776666666655555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 5172.97
//
Query:       CDO73200.1  [L=188]
Description: hypothetical protein BN946_scf185007.g255 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-31  108.5   0.0      3e-14   53.6   0.0    2.1  2  LMWPc      Low molecular weight phosphotyrosine protein phosp
  ------ inclusion threshold ------
      0.097   13.1   0.0       0.79   10.2   0.0    2.2  2  DraK_HK_N  DraK Histidine Kinase N-terminal domain


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   4.8e-18   4.3e-14       1      57 [.       7      62 ..       7      68 .. 0.93
   2 !   53.6   0.0   3.3e-18     3e-14      60     142 .]      95     176 ..      89     176 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 4.8e-18
                EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTST.TT-B--HHHHHHHHH CS
       LMWPc  1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgal.vgkradpravevlke 57
                vl+vClgNicRSp+ ea++++ ++++  + +++vdSaGt+++ +g+ +d r +++++e
  CDO73200.1  7 VLVVCLGNICRSPIGEAVLKHVAKER--GVDLTVDSAGTSNFhIGEDPDDRYAACAAE 62
                89**********************98..6677*******************9999876 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 3.3e-18
                 S--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTTGGGGEEEGGGGSSTSS---HTTSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc  60 islsghvarqlskeelaelDlilamdeenkreleslapekekakvkllgeyteqldieDPyygeieafeevldeieeavkkll 142
                 ++++ h+arq+  e+++++  ila de+n+r l++++p+ ++a v+l g+y ++  i+DPyyg++++fe+v++++ + ++++l
  CDO73200.1  95 VPIE-HAARQVVPEDFRTFTHILAADEANLRALNRMKPRDATAEVRLWGSYLDNEPIADPYYGGMKDFEKVYHQCVKLSNAFL 176
                 6788.************************************************************************999986 PP

>> DraK_HK_N  DraK Histidine Kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.8e-05      0.79      31      68 ..      19      56 ..      15      76 .. 0.76
   2 ?   -0.2   0.0      0.15   1.4e+03      26      53 ..     115     142 ..     113     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.8e-05
                ---HHHHTTT-SS-S.EEEEE-TT-.--B-S---.-SSE CS
   DraK_HK_N 31 pitaelLeeqvpgdr.yvvVripggtpieaGedpvegrv 68
                pi +++L+   ++++  ++V+  g   +++Gedp ++r 
  CDO73200.1 19 PIGEAVLKHVAKERGvDLTVDSAGTSNFHIGEDP-DDRY 56
                78888898888888899*******77********.7764 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
                 HHHTS---HHHHTTT-SS-SEEEEE-TT CS
   DraK_HK_N  26 laagepitaelLeeqvpgdryvvVripg 53 
                 ++a ++ + ++L +  p d+ + Vr+ g
  CDO73200.1 115 ILAADEANLRALNRMKPRDATAEVRLWG 142
                 6778899999*******99999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.51
# Mc/sec: 1107.13
//
Query:       CDO73201.1  [L=549]
Description: hypothetical protein BN946_scf185007.g256 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-123  412.9   0.1   1.6e-123  412.7   0.1    1.0  1  Aldedh     Aldehyde dehydrogenase family
  ------ inclusion threshold ------
        0.1   12.1   0.1       0.23   10.9   0.1    1.5  1  T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A011


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.7   0.1  1.7e-127  1.6e-123       1     461 [.      63     526 ..      63     527 .. 0.97

  Alignments for each domain:
  == domain 1  score: 412.7 bits;  conditional E-value: 1.7e-127
                 EET-SSSE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveseset.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 +ves++++ i+v++Pat++ +++vp+ t++++d+av+aA ea+k+w++ ++ +R++ +  +++ l+++ + +a  ++le+Gk++ +a++++ + ++v++
  CDO73201.1  63 FVESKADKwIDVVDPATQTLLTRVPETTSSEFDQAVNAASEAYKTWSRSSVLTRQRFVLDLQHQLKQNGDAIASSIVLEQGKTYPDAQGDLLRGLQVVE 161
                 678888777****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.C.TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCC CS
      Aldedh  99 yyaelaeklegevlps.s.egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgse 195
                  +++  + l g++++  + +++l +   + l  + +I+P+NfP+++++w++ +ala+GNt +lKP+e+ p  a+++ael+++aglP+gvlnvv+g    
  CDO73201.1 162 TACGIPTALMGQTIEGtKaASSLPMASSHLLFATDSIAPFNFPAMIPLWTIPMALATGNTLILKPSERDPGAAMIIAELCQRAGLPEGVLNVVHG-TVP 259
                 *************9995468888888888899999************************************************************.667 PP

                 HHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 196 vgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 + +a+++hp ++++sf+G+ + g++i+++  ++ krv++ lG+kn+++ ++da+ ++a+++i+ +afg aGQ+C+a+s +++   +   ++ +lve+ak
  CDO73201.1 260 TVNAICDHPAIKAISFVGGDRAGKHIYERGRATGKRVQANLGAKNHAVLMPDANKNHALNSIIGAAFGAAGQRCMAISVAVLVGPT-HSWIPELVERAK 357
                 99***************************9999*********************************************99999888.6899******** PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHS CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNd 392
                 klkv +++++ td+GP+is+a+ +++++++++a+eeg  + l+g+  + +g+ +g++v Ptv++  t+ mr+++eEiFGPVl vik++++++a++i N+
  CDO73201.1 358 KLKVNQGFEQGTDLGPVISPAAKQRITGLIASAEEEGGIIALDGRnYQVPGYPDGNWVGPTVIE-ATTTMRCYREEIFGPVLIVIKADTLDDALAIINE 455
                 ******************************************9999899***************.699******************************* PP

                 SSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES..-BSHHHHHHHTEEEEE CS
      Aldedh 393 teyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglG..reggkegleeytevkt 461
                 ++yG++ ++ft++ ++a+++ +++e+G+v+iN ++ +   ++ + G k+S lG   + g++g+++yt+ kt
  CDO73201.1 456 NKYGNGTAIFTQSGATARKFEREVEVGQVGINVPIPVPLPMFSWSGNKASFLGdiPFYGRHGIDFYTQNKT 526
                 *****************************************************98899**********997 PP

>> T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.6e-05      0.23     108     154 ..      68     117 ..      63     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.6e-05
   T6SS_VasJ 108 yadaaeaieeelaalLarlPgLeeLsFsDgtPFadeetraWlaeea...a 154
                 ++++ + +  ++++lL+r+P+  + +F+  +  a+e+ + W ++ +   +
  CDO73201.1  68 ADKWIDVVDPATQTLLTRVPETTSSEFDQAVNAASEAYKTWSRSSVltrQ 117
                 56899************************************999885440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3912.90
//
Query:       CDO73202.1  [L=295]
Description: hypothetical protein BN946_scf185007.g257 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.4   0.3      0.077   13.2   0.3    3.4  1  SH3BGR    SH3-binding, glutamic acid-rich protein


Domain annotation for each model (and alignments):
>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   4.3e-06     0.077      20      98 ..      75     140 ..      37     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHHTT--EEEEETTT-HHHHHHHHHCST-CCCS-SSSS--S-EEEETTEEEEEHHHHHHHHTTT-HHHHHT- CS
      SH3BGR  20 qqevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakeentleefLkL 98 
                  +  lr+L+ kk+ f + D+++dee ++l +++               P i+ + e+ G  ++f  a+e   l +fL+L
  CDO73202.1  75 AEYLLRVLQVKKVAFTSYDLASDEEAKKLWHKQQ-------------LPGILIGGEFPGTIQDFEDAVEFGELDAFLRL 140
                 3446778888888888888888877777766444.............36788889999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2246.56
//
Query:       CDO73203.1  [L=381]
Description: hypothetical protein BN946_scf185007.g258 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-19   70.5   0.0    1.3e-18   67.8   0.0    1.9  1  Seipin          Putative adipose-regulatory protein (Seipin)
  ------ inclusion threshold ------
      0.029   14.8   0.1      0.074   13.5   0.1    1.6  1  G0-G1_switch_2  G0/G1 switch protein 2
      0.084   13.1   0.4        0.2   11.9   0.0    1.8  2  MAP17           Membrane-associated protein 117 kDa, PDZK1-in
       0.21   10.3   0.6       0.29    9.9   0.6    1.1  1  NPR3            Nitrogen Permease regulator of amino acid tra


Domain annotation for each model (and alignments):
>> Seipin  Putative adipose-regulatory protein (Seipin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.9e-22   1.3e-18      11     197 .]      76     256 ..      66     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 2.9e-22
      Seipin  11 yilfyyayvpevi.lskpvhlqygkltsPyanvslnsdssllkenqkYdvsveLslPeseaNlelGnFmvelellsssgkilanssrpal.Lpyrsplv 107
                 +++ y+ +    +  +++++lqyg +  P+ +v l    + ++ +q+Yd+s++L +P +eaN  lGnFm +l+l+++s+ ++a +++pa+ Lp++ ++ 
  CDO73203.1  76 VGSGYWVWKSVAVgWETEIFLQYGDGPVPFSEVAL----PSVVAQQPYDISLHLVVPANEANFALGNFMASLTLMTPSNGTIAAARKPAIvLPPIASPW 170
                 445577776655559********************....789***********************************888*********6144444443 PP

      Seipin 108 rllrtllllpllllglneesq.tlrvplaesvvennenpptsarvevqsraa.........pelqiysAklrfeakltglrylmyshpilsfvvftllf 196
                 + l            +n+ ++  l++p+++++v +  ++ + arve+ +r++         +e+ + s  +r  +  +g+r l+ ++p++s++  +++f
  CDO73203.1 171 SFL------------YNRPGTvDLNIPMLKDFVLG--TTRALARVELGRRDQwktlgvghgREVSVLSGYIRGVVLHHGVRGLISRFPLVSALAASVVF 255
                 333............34444448*********866..5889999***999999******************************************9999 PP

      Seipin 197 w 197
                 +
  CDO73203.1 256 F 256
                 7 PP

>> G0-G1_switch_2  G0/G1 switch protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.6e-05     0.074      34     103 ..     259     322 ..     248     333 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
  G0-G1_switch_2  34 allGvviglvetvcspFssesrlreeeeavaklqaarekeaeekeeelvlekekakelalaqRalsnRlh 103
                      ++G+v  l+ +v   F+s+s+   +++++ + + ++++++e +      +++k ++ ++ qR++s R h
      CDO73203.1 259 MFVGMVACLMPAVEWHFPSDSDETPQADDKMRRRRRSRRKTEGE-----PDDQKPRT-KVLQRTHSSRSH 322
                     589****************9966555554444432222222222.....22333332.356666666666 PP

>> MAP17  Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.7       2.9   1.3e+04     101     107 ..       7      13 ..       2      24 .. 0.35
   2 ?   11.9   0.0   4.5e-05       0.2      29     110 ..     243     325 ..     237     344 .. 0.53

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.9
       MAP17 101 egrsneg 107
                 e +++e 
  CDO73203.1   7 ENEEKER 13 
                 1111111 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.5e-05
       MAP17  29 kPWlvGliAvvgFLflvfvlllvnrvWcskaraedeeeetfrmeanke.edvslskeekkeeekekkekkaakegrsneglel 110
                  P +  l+A v+F f+ fv +++  +   +    ++++et ++  ++     s++k+e++ + ++   k  ++  +s ++  +
  CDO73203.1 243 FPLVSALAASVVFFFIMFVGMVACLMPAVEWHFPSDSDETPQADDKMRrRRRSRRKTEGEPDDQKPRTKVLQRTHSSRSHSRA 325
                 5777889***************9887665544444443333333333202233334444433333333333333333333333 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   6.6e-05      0.29      30     101 ..     259     337 ..     257     363 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.6e-05
        NPR3  30 aFlGlPvhvdedgkwrkskkkk.......kkskrkrssrskekkskesskksesssksesseekksskeseeseekesn 101
                 +F+G+  ++ +  +w+ +++++       k  +r+rs+r++e ++++++ +++  ++++ss++++  + s+e++e++ +
  CDO73203.1 259 MFVGMVACLMPAVEWHFPSDSDetpqaddKMRRRRRSRRKTEGEPDDQKPRTKVLQRTHSSRSHSRARGSREASEQDVK 337
                 7888888999999999998888777666544444444444455555544444444444444443333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2731.84
//
Query:       CDO73204.1  [L=213]
Description: hypothetical protein BN946_scf185007.g259 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1545.62
//
Query:       CDO73205.1  [L=219]
Description: hypothetical protein BN946_scf185007.g260 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1628.66
//
Query:       CDO73206.1  [L=592]
Description: hypothetical protein BN946_scf185007.g261 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-15   54.9   0.0    1.2e-14   54.2   0.0    1.3  1  LCCL      LCCL domain


Domain annotation for each model (and alignments):
>> LCCL  LCCL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   6.7e-19   1.2e-14       3      89 ..     159     273 ..     157     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 6.7e-19
                 S--BTTT--..............SSEEEEEE-S---SSS...--EESSS................SEETTSBHHHHHHHHTSS.-TT-EEEEEEEE--B CS
        LCCL   3 Csttllsea........klrkkkgekfavrCpanCkdek...asvvGsk................vYssdSsICkAAihaGvi.dnkgglvvvtiveel 73 
                 C  t +  +        ++ ++++++f +rCpa+C++     +++vG++                +Y+ dS+IC+AA+ aG+i d++gg+ +++++++ 
  CDO73206.1 159 CTATYWAANdgcgldgqNCGPFDNATFDFRCPAQCSSVIlqnPRTVGNEqvdfvplivgggdeqrTYRGDSFICAAAVQAGLIsDSRGGCATLELTGNF 257
                 777777777777888889*****************87666669****************************************9999************ PP

                 -S---EE-SS-EEE-- CS
        LCCL  74 keykgskqngieSesl 89 
                 + +   + +g++S  +
  CDO73206.1 258 TDFLPFSAHGLTSIGF 273
                 ************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4142.25
//
Query:       CDO73207.1  [L=313]
Description: hypothetical protein BN946_scf185007.g262 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2269.44
//
Query:       CDO73208.1  [L=288]
Description: hypothetical protein BN946_scf185007.g263 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-05   22.7   2.4    0.00014   21.9   2.4    1.5  1  WW              WW domain
  ------ inclusion threshold ------
       0.14    9.5   1.1       0.18    9.2   1.1    1.0  1  DUF4603         Domain of unknown function (DUF4603)


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   2.4   1.6e-08   0.00014       1      31 []       8      40 ..       8      40 .. 0.99

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.6e-08
                X-TTEEEEE-TTTT-EEEEETTT..--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheT..getqWekP 31
                LP+GW++ +dp+++ +++++++   +++ W++P
  CDO73208.1  8 LPAGWVKEYDPTTKHPFWVDTKAkpPRSIWVHP 40
                8*******************************9 PP

>> DUF4603  Domain of unknown function (DUF4603)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.1     2e-05      0.18     208     273 ..     114     179 ..      82     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 2e-05
     DUF4603 208 geatkerksealatvseraqqrrskkekenrfssgaaeekvavkskkqvrhrsegklrPrswssGs 273
                    + + k++a++t +er+ +rr  + +e+ + +++ae++  v++++q ++ s+      s+s Gs
  CDO73208.1 114 RGFFGKLKDKAIGTKEEREVKRREEQRQEEEYMRQLAEQRRRVQQQRQQQRVSSPFGGYSSFSQGS 179
                 555556678999****************************99998888877776555555666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1593  (0.0888505); expected 358.6 (0.02)
Passed bias filter:                      834  (0.0465168); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 2161.56
//
Query:       CDO73209.1  [L=1298]
Description: hypothetical protein BN946_scf185007.g264 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-25   87.4   0.0    1.6e-19   70.2   0.0    2.3  2  TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa sub


Domain annotation for each model (and alignments):
>> TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   8.9e-24   1.6e-19      14     165 ..     188     367 ..     178     369 .. 0.77
   2 !   14.7   0.0   6.1e-07     0.011     324     395 ..     439     504 ..     409     527 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 8.9e-24
  TRAPPC-Trs85  14 fsnlqsslpnspkwlnpdvlryyvllhDeseeeesk.aeallekikktlglecalLpinSrs................................gss 77 
                    ++l s+   +p+w++  +lry++++h ++++  +  aeal++ +kk++gl+++lLp+                                    ++s
    CDO73209.1 188 LQELTSRAFDFPPWVDLTSLRYFLIIHPSNSPLADPiAEALFNAVKKQYGLHSFLLPL---LlptdplpapvpvpalpprlptlsslespsltpQPS 281
                   34444444445*******************9666667999******************...557899******************987777766333 PP

  TRAPPC-Trs85  78 aasaessssadsaeeadeseplsaaeeaaslsqsesssleedlssestshgalLslsdvdsirafirelvvqslipfmerkirqlneq 165
                       + +  a +  +++ s ++ a+ + a +s+++++s +  ++++ t ++  Ls+ d+++i +f+re+v+ sl+p+me+++  +ne+
    CDO73209.1 282 GPGGDTITPAPTPPPHPASPMPHASRPPALTSRPQETSAD--SDADYTGSTLRLSQDDIQQIGRFVREFVTMSLVPWMEKCVVEWNEN 367
                   3333444444444555555445555555555555555554..478899999***********************************96 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.1e-07
  TRAPPC-Trs85 324 llkltselddaavrsalllEqaalcflqrsagltrrRKaafhmvlAahryskagqkrqalrclkqalsvykg 395
                   l+k +s++++    +a+l+  aa + +        rR+aa+++++Aa++ +k g+k +a   +++a + y++
    CDO73209.1 439 LVKSASSAEE--PPTAILYAHAAFLSEL----KGARRRAALWYLVAAEKLEKTGIKPLAMYFFRKAYDLYQN 504
                   4566666666..7788888888877777....7889**********************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 8875.97
//
Query:       CDO73210.1  [L=110]
Description: hypothetical protein BN946_scf185007.g265 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-10   39.2   1.6    9.4e-10   38.6   1.6    1.4  1  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   1.6   5.2e-14   9.4e-10       5      61 ..      27      83 ..      22      84 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 5.2e-14
  Mpv17_PMP22  5 gksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyL 61
                  ks+ee+++++k+ f ++l   w+  p+  ++   ++P++++v+f+n+++++ +ty 
   CDO73210.1 27 AKSVEEVVKTVKAGFGKVLRITWMTAPVYTVFAQQYLPPEMWVPFFNFMQFLTGTYF 83
                 589****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1166  (0.0650343); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 763.25
//
Query:       CDO73211.1  [L=307]
Description: hypothetical protein BN946_scf185007.g266 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-33  115.1   4.4    6.7e-17   61.2   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.4   8.4e-12   1.5e-07       6      82 ..      14      82 ..       9      91 .. 0.84
   2 !   23.1   0.1   2.9e-09   5.2e-05       6      94 ..     103     193 ..      99     196 .. 0.75
   3 !   61.2   0.0   3.8e-21   6.7e-17       3      92 ..     204     292 ..     202     296 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 8.4e-12
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHH CS
   Mito_carr  6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalk 82
                ++++++Gg+  +v t++ +Pl+v+Kt++ ++++++       +l+++++++   G++g+y+Gl+p     a+++++ 
  CDO73211.1 14 WSNIAVGGIMNMV-TTLGQPLEVLKTQMAANRQQT-------MLQAIQTVWSRGGIAGFYQGLIPWAWIEASTKGAV 82
                889999*****99.6789********999888774.......9*********************9776666666554 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.9e-09
                 HHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   6 lkellaGglagavatlvttPldv.vKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++ ll G+ +g+v++ +t+ + + +Kt   t  k++++ + ++  ++ v+  i++ eG+rg  +G+++  +r+  +++ ++++     +++ 
  CDO73211.1 103 AAGLLGGMGGGIVQAYATMGFCTcMKTAEITRHKQAAS-GIKPpsTWAVFADIWRREGIRGINKGVNAVAVRQCTNWGSRMGFARLAEDTIR 193
                 55677788888888888887754155555555544444.334468*********************************99998777766665 PP

  == domain 3  score: 61.2 bits;  conditional E-value: 3.8e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 l++++++la++++ga+ ++  +P++vv++ +q+ +ks++  +++ il+vl+ iyke+G++glyrG++p++   + +++++++l +++k +
  CDO73211.1 204 LTPYEKILASSIGGAL-GTWNQPIEVVRVEMQSMAKSAERGEKKTILNVLRYIYKENGIKGLYRGVTPRIGLGIWQTVCMVSLADYVKAW 292
                 678999*********9.6789****************99999999****************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2107.42
//
Query:       CDO73212.1  [L=298]
Description: hypothetical protein BN946_scf185007.g267 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0077   16.1   0.2      0.024   14.5   0.2    1.9  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.033   14.6   1.2        1.1    9.7   0.4    3.0  3  LRR_4       Leucine Rich repeats (2 copies)
       0.71    9.7   7.1       0.25   11.1   2.2    2.6  3  LRR_8       Leucine rich repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   4.1e-06     0.024       2      47 ..       2      47 ..       1      48 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
  F-box-like  2 srLPdEiLlqIFsyL.p.psdLlrlalVCrrWrrvaldtplLWrrlvl 47
                ++ P E+  +I ++L + +++L+++a V+r W  +a+    L r +vl
  CDO73212.1  2 PNVPLELTDYIIDFLhEdARTLASCAVVSRAWIPAAR-F-HLFRSIVL 47
                67799999999999964366************98884.3.68888877 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0013       7.6      18      43 ..     101     123 ..      95     127 .. 0.72
   2 ?    9.7   0.4   0.00019       1.1       1      42 [.     107     149 ..     107     152 .. 0.69
   3 ?   -0.5   0.0      0.31   1.8e+03      19      33 ..     172     185 ..     164     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
                 -.HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4  18 l.leklpnLkeLdLsgNnlitdldeLk 43 
                   l++lp+L++L+L +     dl +++
  CDO73212.1 101 QvLQQLPHLRSLTLAHV----DLKNIA 123
                 44788*********887....554443 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00019
                 SS--EEE--SS---E-S-HH..H-TT--EEE-.-S-----GGGG CS
       LRR_4   1 pnLevLdLsnNqltdiplle..klpnLkeLdLsgNnlitdldeL 42 
                 p+L++L L++  l+ i +l+    p L +L+Ls + +  d+ +L
  CDO73212.1 107 PHLRSLTLAHVDLKNIANLSslHHPALSSLSLSYC-QFADFADL 149
                 67888888875555555544111677******999.77777665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.31
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 l+++  L++L L ++
  CDO73212.1 172 LAGCAALESLRL-QF 185
                 567889999999.54 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.75   4.5e+03      16      30 ..      47      62 ..      46      63 .. 0.72
   2 ?   11.1   2.2   4.2e-05      0.25      18      60 ..     100     142 ..      95     143 .. 0.87
   3 ?   -0.4   0.0      0.16   9.7e+02      44      57 ..     171     184 ..     169     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.75
                E-TTSSTT.-TT--EE CS
       LRR_8 16 lddeaFkg.lsnLkvL 30
                l+d+aF++ +++L +L
  CDO73212.1 47 LRDDAFSSsFRRLLTL 62
                7889998877777766 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.2e-05
                 TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  18 deaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 +++ ++l++L++L L +  l+ + + +  + p+L sL Ls+++
  CDO73212.1 100 PQVLQQLPHLRSLTLAHVDLKNIANLSSLHHPALSSLSLSYCQ 142
                 5677899999999999999999999999999999999999987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.16
                 GGTT--S-.EEE-- CS
       LRR_8  44 afsgLpsLrsLdLs 57 
                 +++g+++L+sL L+
  CDO73212.1 171 SLAGCAALESLRLQ 184
                 68899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2035.35
//
Query:       CDO73213.1  [L=1009]
Description: hypothetical protein BN946_scf185007.g268 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00067   20.2  15.9    0.00067   20.2  15.9    6.1  5  Fez1            Fez1
     0.0011   19.2   7.5     0.0011   19.2   7.5   10.2 10  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
     0.0027   17.2   1.1     0.0027   17.2   1.1    7.6  7  DUF4349         Domain of unknown function (DUF4349)
  ------ inclusion threshold ------
      0.011   16.2   4.5      0.011   16.2   4.5    8.7  9  DUF4200         Domain of unknown function (DUF4200)
       0.21   11.2 120.8       0.75    9.3  25.9    6.0  5  Filament        Intermediate filament protein


Domain annotation for each model (and alignments):
>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  15.9   1.9e-07   0.00067      26     154 ..     303     439 ..     297     445 .. 0.82
   2 ?   -0.3  22.2      0.34   1.2e+03      38     141 ..     493     595 ..     457     602 .. 0.47
   3 ?    0.0  23.4      0.28     1e+03      38     147 ..     599     734 ..     587     738 .. 0.51
   4 ?    2.8  15.5     0.039   1.4e+02      35     114 ..     719     803 ..     701     838 .. 0.50
   5 ?    1.5  17.8     0.095   3.4e+02      50     153 ..     836     978 ..     804     988 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.9e-07
        Fez1  26 vtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.......les 117
                 v    + + +l+++l +++++l++k e+++ le++l + +++l+  ++e + k+s + +l+    ++eeel+ lr++l++++++++ ++       +e 
  CDO73213.1 303 VRDDSKAVAELQSKLDDANSALSSKSEAVSGLESELASLKASLQAAQAEAEAKSSAVANLEAAKANVEEELAALRDSLEKAQSSQSGESaqvealhAEL 401
                 5555667889********************************************************************997766655555666666333 PP

        Fez1 118 deakaq.rqeaeeleelkreverlraeLkeerqkkeeq 154
                 +++ka   ++ e +++l++++e l+ae++  +++ e+ 
  CDO73213.1 402 EASKAAnAAQVELVTSLQAQIEALQAEVAAAKENLEAI 439
                 333332133477899*************9999998765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.34
        Fez1  38 aqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkre 136
                  +l e +a++++  +ei+el+ + eek++++ ++e e+ + k+e+e+ ++  ek+ + lk l eel+++++   ++ale  +ak+ + +a++ e+ k++
  CDO73213.1 493 QELEEKSARVDALISEIEELKRENEEKANKVSELEVEILELKDEQETSNDAHEKTLARLKLLEEELAKSAAA-VQQALEDAKAKEAEYAARTEETSKAH 590
                 222333333444444555555555555555555555555556666666665555555555555555553332.22223333333333333333333333 PP

        Fez1 137 verlr 141
                  e+l 
  CDO73213.1 591 QEQLD 595
                 33333 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.28
        Fez1  38 aqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekv.ekleeelkelreelselsleeeeaa..........lesdeakaqrq 125
                 a+  el+akl++ e e+ ++ ++ e  ++e     +e qr+ +++e lr++v  kl+ee++++ +el++++++ +e++          l          
  CDO73213.1 599 AEHAELQAKLSALEVELAQVIAAGERAKAEASAAAEEHQRQLADSEKLRQEVeAKLSEEIARITTELESQEAKYNEKVaavkaehdqlL---------- 687
                 45567777777777777777777777777777777777777666555554441467777777777777755544444444444444330.......... PP

        Fez1 126 e.........................aeeleelkreverlraeLkee 147
                 +                         + ++e+l+++ ++  +eLk e
  CDO73213.1 688 QeaferakneagdlhgqdlqklraesQAAIEQLRASHQHTIEELKAE 734
                 13444444344444422222222222444444444444444455555 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.039
        Fez1  35 alkaqlrelrakle.....ekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa 114
                 +l+a+ + + ++l+     + e+++k le++l++++lel+  +++l+++k+    + +++e++ ++l+e r+ +++l +++++++
  CDO73213.1 719 QLRASHQHTIEELKaehqaALESQVKALEKQLSHQALELKATQEDLAKAKAALASVTQELESTRTQLEEARQLVASLDKTDKDEV 803
                 3444433333333311111345566666666666666666666666666666666666666666666666665555443333322 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.095
        Fez1  50 keeeikeleesleektlelevcenelqrk....kseaellrekvekleeelkelreelselsleeeeaa.........................lesde 119
                  ++++kelee+++++++e+ ++ +  +++     +e++ l  +++ le el+ ++ +l++  ++ ++++                         +    
  CDO73213.1 836 ADNHVKELEEAAKTRAEEVTRLRAAHEEAvsalAQEKSQLLTRLSDLEGELATVKAALAAGPATPSKSNgsahqrtssvsredlqklheahnarM---- 930
                 46677777777777777777665554444444466777777778888888888888777754444443355555555554444433333322220.... PP

        Fez1 120 akaqrqe....................aeeleelkreverlraeLkeerqkkee 153
                       +                    + ++++l++ev+r   e+++ +q +ee
  CDO73213.1 931 ------HdieaeheramramreeldimRAKADDLQQEVARKTMEIQYLEQDQEE 978
                 ......122222222222233334444455555555555555555554444444 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.3   0.00029         1      64     107 ..     301     344 ..     294     347 .. 0.89
   2 !    6.5   5.1    0.0026       9.4      16      77 ..     340     402 ..     338     407 .. 0.77
   3 !   19.2   7.5   3.1e-07    0.0011       3      98 ..     404     499 ..     402     503 .. 0.94
   4 ?   -0.9  18.0      0.52   1.9e+03       5      85 ..     486     570 ..     483     578 .. 0.79
   5 ?    1.0  10.6      0.14   4.9e+02      12      82 ..     542     610 ..     536     612 .. 0.85
   6 ?   -5.2  19.9         5   1.8e+04      16      82 ..     603     674 ..     588     720 .. 0.72
   7 ?   -0.9   9.4      0.52   1.9e+03      22      76 ..     663     731 ..     651     740 .. 0.64
   8 ?    0.9  15.3      0.14   5.1e+02      16      78 ..     738     800 ..     725     845 .. 0.77
   9 ?    1.1   2.8      0.13   4.5e+02      33      83 ..     838     889 ..     828     895 .. 0.70
  10 ?   -0.7   7.7      0.45   1.6e+03      25      70 ..     938     983 ..     910     989 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00029
  TMF_TATA_bd  64 keleelekeleelqeryetlLellGeksEeveELraDvaDlKem 107
                  ke+++ +k ++elq++++ +   l  ksE v  L+ ++a lK+ 
   CDO73213.1 301 KEVRDDSKAVAELQSKLDDANSALSSKSEAVSGLESELASLKAS 344
                  678888899********************************975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0026
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkel.kkeleelekeleelq 77 
                  +l+++++  ++E ++  + +++lea + +++ee+++l  + e+ +++ ++e++++e+  +el+
   CDO73213.1 340 SLKASLQAAQAEAEAKSSAVANLEAAKANVEEELAALRDSLEKAQSSqSGESAQVEALHAELE 402
                  688999999999999999*****************9999999876541455666665555554 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.1e-07
  TMF_TATA_bd   3 stssagpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELr 98 
                  s++++ ++v+lv++l+++i  l++E+a++ke+le + a+ d++++  ++  ++  +l ++k++l+ +++e ++l+ ++ ++L   + k  e eE  
   CDO73213.1 404 SKAANAAQVELVTSLQAQIEALQAEVAAAKENLEAIRASSDAVAAAAAASESDRAALLQAKADLDAIKAESDALKAEQGQALAAAQAKIQELEEKS 499
                  67889999**************************************************************************99999999999855 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.52
  TMF_TATA_bd   5 ssagpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkke....leelekeleelqeryetlLe 85 
                  ++a++++q +e+ s+++  l +E+++lk+e+e+ +++ +e++ ei++l  e e+ ++++++    l+ le+el++     +++Le
   CDO73213.1 486 AAAQAKIQELEEKSARVDALISEIEELKRENEEKANKVSELEVEILELKDEQETSNDAHEKtlarLKLLEEELAKSAAAVQQALE 570
                  6789999******************************************988887766554111155566666666666666655 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.14
  TMF_TATA_bd  12 qlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryet 82 
                     e+  ++++ lE Ela++   +++  +  ++ ++e ++ +   e+ k+ +++l++  +e +elq ++++
   CDO73213.1 542 DAHEKTLARLKLLEEELAKSAAAVQQALEDAKAKEAEYAART--EETSKAHQEQLDKAAAEHAELQAKLSA 610
                  556777789****************99999999999998877..678888999999999******999876 PP

  == domain 6  score: -5.2 bits;  conditional E-value: 5
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkel.....kkeleelekeleelqeryet 82 
                  +l++++  lE+Ela++    er +ae ++a+ee  + ++++e+l+++     ++e++ +++ele+ + +y++
   CDO73213.1 603 ELQAKLSALEVELAQVIAAGERAKAEASAAAEEHQRQLADSEKLRQEveaklSEEIARITTELESQEAKYNE 674
                  799999999999999999999999999999999999999999998761111134444455555555555543 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 0.52
  TMF_TATA_bd  22 rrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelek...............eleel 76 
                   +lE++ a+++e+++ ++ae d++ +e  +   +ne+ +   ++l++l++                +eel
   CDO73213.1 663 TELESQEAKYNEKVAAVKAEHDQLLQEAFERA-KNEAGDLHGQDLQKLRAesqaaieqlrashqhTIEEL 731
                  45778888899999999*********999987.6777777777777777744553333334444444444 PP

  == domain 8  score: 0.9 bits;  conditional E-value: 0.14
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqe 78 
                   l+s+++ lE +l++   el+  ++   +a++ ++++++e e+++++ +e ++l ++l++ ++
   CDO73213.1 738 ALESQVKALEKQLSHQALELKATQEDLAKAKAALASVTQELESTRTQLEEARQLVASLDKTDK 800
                  578888888888888888888888888888888888888888888888888888776666544 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.13
  TMF_TATA_bd  33 eelerleaerdeareeivklm.keneelkelkkeleelekeleelqeryetl 83 
                  + +++le+  ++ +ee+ +l  +  e++++l++e ++l ++l++l+ ++ t+
   CDO73213.1 838 NHVKELEEAAKTRAEEVTRLRaAHEEAVSALAQEKSQLLTRLSDLEGELATV 889
                  5667777777777788888872344556777888888888888887776665 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 0.45
  TMF_TATA_bd  25 EgElaslkeelerleaerdeareeivklmkeneelkelkkeleele 70 
                  E  +++++eel  + a+ d++++e+++ + e + l++ ++e++++ 
   CDO73213.1 938 ERAMRAMREELDIMRAKADDLQQEVARKTMEIQYLEQDQEENQDQI 983
                  4447789999999****************99999999999988765 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.6  15.9         5   1.8e+04      78     168 ..     321     416 ..     298     463 .. 0.63
   2 ?   -6.9  11.6         5   1.8e+04     102     177 ..     479     552 ..     462     569 .. 0.69
   3 ?  -13.4  17.6         5   1.8e+04     100     166 ..     560     626 ..     499     645 .. 0.60
   4 ?   -1.2   2.4      0.33   1.2e+03     119     140 ..     652     673 ..     624     683 .. 0.70
   5 !    5.4   8.5     0.003        11      92     147 ..     740     793 ..     706     798 .. 0.80
   6 ?   -2.6   2.0      0.83     3e+03      99     132 ..     859     893 ..     840     896 .. 0.54
   7 !   17.2   1.1   7.6e-07    0.0027      94     192 ..     908    1004 ..     905    1009 .] 0.79

  Alignments for each domain:
  == domain 1  score: -5.6 bits;  conditional E-value: 5
     DUF4349  78 stsaeDVTeqyvDleaRlkaleasedrllallek.aksvedl....leiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaeeee 168
                 ++  +  +e +  le+ l++l+as +  +a  e  ++ v+ l     ++e+eL+  +  +e++++++   + qv+    +++ ++  ++++ e  +
  CDO73213.1 321 NSALSSKSEAVSGLESELASLKASLQAAQAEAEAkSSAVANLeaakANVEEELAALRDSLEKAQSSQSGESAQVEALHAELEASKAANAAQVELVT 416
                 455555566666677777777777777777774414433333222246888899999999999888888888887766666666555555544433 PP

  == domain 2  score: -6.9 bits;  conditional E-value: 5
     DUF4349 102 edrllallekaksvedlleiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaeeeegegfleals 177
                  ++ +al + ++++++l e + ++    +eie+l+++ ++ +n+v+   ++v++ e + e+e++++  e+ l++l+
  CDO73213.1 479 AEQGQALAAAQAKIQELEEKSARVDALISEIEELKRENEEKANKVS--ELEVEILELKDEQETSNDAHEKTLARLK 552
                 356677888899************************9999999885..6666666666666666555445555444 PP

  == domain 3  score: -13.4 bits;  conditional E-value: 5
     DUF4349 100 asedrllallek..aksvedlleiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaee 166
                 +s + +++ le+  ak++e   + e+  +  q++++++ ++ ++L+    +s ++v+l ++ a+ e+++
  CDO73213.1 560 KSAAAVQQALEDakAKEAEYAARTEETSKAHQEQLDKAAAEHAELQA--KLSALEVELAQVIAAGERAK 626
                 33444555563312456666666666666677777777777777744..45666666666655555554 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.33
     DUF4349 119 leiereLsevqaeieslegqlr 140
                  ++++e++++++e+es e++ +
  CDO73213.1 652 AKLSEEIARITTELESQEAKYN 673
                 57899***********998765 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.003
     DUF4349  92 eaRlkaleasedrllallekaksvedlleiereLsevqaeieslegqlryLdnqva 147
                 e+++kale++     + le +++ edl +++ +L++v++e+es ++ql++ ++ va
  CDO73213.1 740 ESQVKALEKQLS--HQALELKATQEDLAKAKAALASVTQELESTRTQLEEARQLVA 793
                 333333333333..2445556699************************99888776 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 0.83
     DUF4349  99 easedrllall.ekaksvedlleiereLsevqaei 132
                  a+e+ + al  ek++ +  l  +e eL++v+a +
  CDO73213.1 859 AAHEEAVSALAqEKSQLLTRLSDLEGELATVKAAL 893
                 34445555555333555555555555555555544 PP

  == domain 7  score: 17.2 bits;  conditional E-value: 7.6e-07
     DUF4349   94 Rlkaleasedrllallek.aksvedl.leiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaeeeegegflealsggwnalvefla 188 
                  + ++   s++ l++l e  ++++ d+  e er++   ++e++ ++++   L+++va  t ++++ e+++e+++++ +  +  + +  g+++++ ++ 
  CDO73213.1  908 HQRTSSVSREDLQKLHEAhNARMHDIeAEHERAMRAMREELDIMRAKADDLQQEVARKTMEIQYLEQDQEENQDQIT--RYVKVF--GFKSFLGAVF 1000
                  56777889999****9664889999966899*************************************999887643..444443..3555555555 PP

     DUF4349  189 gllv 192 
                  +l+v
  CDO73213.1 1001 TLAV 1004
                  5555 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.8     0.024        85      52     105 ..     308     361 ..     299     364 .. 0.83
   2 ?   -1.5  13.3      0.87   3.1e+03       7     105 ..     337     438 ..     316     444 .. 0.68
   3 ?    1.4  16.8      0.11     4e+02       7     106 ..     421     526 ..     418     528 .. 0.68
   4 ?    2.3  16.6     0.059   2.1e+02       8      98 ..     460     546 ..     454     551 .. 0.80
   5 ?    4.9  20.9    0.0092        33       4     105 ..     519     617 ..     518     623 .. 0.88
   6 ?  -13.8  27.1         5   1.8e+04      12      57 ..     647     690 ..     600     752 .. 0.47
   7 ?    3.7  13.7     0.022        80      10     101 ..     730     823 ..     723     826 .. 0.82
   8 ?    2.7   2.4     0.045   1.6e+02      61     107 ..     844     890 ..     835     891 .. 0.81
   9 ?   16.2   4.5     3e-06     0.011      40     116 ..     916     999 ..     906    1001 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.024
     DUF4200  52 kflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleeklee 105
                 k + e ++k  +a+    +++++    e+e++ lka++++ ++e e    ++++
  CDO73213.1 308 KAVAELQSKLDDANSALSSKSEAVSGLESELASLKASLQAAQAEAEAKSSAVAN 361
                 667788899999999999999999999999999999999999998877776665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.87
     DUF4200   7 emfevqealeakkeeiqrleea...lkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeae.ikklkaeietlkseieklee 101
                 e+  ++ +l+a+++e + +  a   l+ +++++e++ + l+++l+k  +  ++ ++ +++al    e +k+    + e +  l+a+ie+l++e +  +e
  CDO73213.1 337 ELASLKASLQAAQAEAEAKSSAvanLEAAKANVEEELAALRDSLEKA-QSSQSGESAQVEALHAELEASKAANAAQVElVTSLQAQIEALQAEVAAAKE 434
                 55566667777777777655441114455566666666677777554.456677777777776666666665555555267899999999999999988 PP

     DUF4200 102 klee 105
                 +le 
  CDO73213.1 435 NLEA 438
                 8875 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.11
     DUF4200   7 emfevqealeakkeeiqrleealkqreeelekke......qeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekl 99 
                 +++ +q +++a+ke+++ +  + +   ++  ++e       + + dl   +      +a++ +al  a+ + ++ +ek a +  l +eie+lk e+e+ 
  CDO73213.1 421 QIEALQAEVAAAKENLEAIRASSDAVAAAAAASEsdraalLQAKADLDAIKAESDALKAEQGQALAAAQAKIQELEEKSARVDALISEIEELKRENEEK 519
                 566777777777777776444433333333333322222356667777777777777888888999999999999999999999999999999999999 PP

     DUF4200 100 eekleey 106
                 ++k+ e+
  CDO73213.1 520 ANKVSEL 526
                 9988886 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.059
     DUF4200   8 mfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiek 98 
                 + +++  l+a k+e   l+ ++ q+ ++ ++k qelee+ +++d  + e+++ +++ ++ka++ +    e e ei +lk+e et +  +ek
  CDO73213.1 460 LLQAKADLDAIKAESDALKAEQGQALAAAQAKIQELEEKSARVDALISEIEELKRENEEKANKVS----ELEVEILELKDEQETSNDAHEK 546
                 66788899999999999999999999999999999999999999999999999988888887665....5567777777777777766666 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.0092
     DUF4200   4 kkremfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleek 102
                 k  +++e++ ++ + k+e ++ ++a ++  + l+  e+el ++++ +++ l++ +ak a+   ++ee +k+++e   ++ k+ ae ++l+++++ le +
  CDO73213.1 519 KANKVSELEVEILELKDEQETSNDAHEKTLARLKLLEEELAKSAAAVQQALEDAKAKEAEYAARTEETSKAHQE---QLDKAAAEHAELQAKLSALEVE 614
                 67788999**************************************************9999999999998876...5777778888888888888877 PP

     DUF4200 103 lee 105
                 l++
  CDO73213.1 615 LAQ 617
                 776 PP

  == domain 6  score: -13.8 bits;  conditional E-value: 5
     DUF4200  12 qealeakk.eeiqrleealkqreeelekkeqeleedllkfdkflken 57 
                  +++eak  eei+r+  +l+++e+++++k +  + +    d+ l+e 
  CDO73213.1 647 RQEVEAKLsEEIARITTELESQEAKYNEKVAAVKAEH---DQLLQEA 690
                 3333333212244444444444444444444444433...3333333 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.022
     DUF4200  10 evqealeak.keeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerk.lkkekeaeikklkaeietlkseieklee 101
                 e++ + +a+ + + + le++l+++  el+++++ l +  + +    +e ++ r++ ++  +  +   k +k++ i++l+ ++++l+++++ l e
  CDO73213.1 730 ELKAEHQAAlESQVKALEKQLSHQALELKATQEDLAKAKAALASVTQELESTRTQLEEARQLVASlDKTDKDEVIAQLTRDLSNLREDHASLNE 823
                 4444444440456778*************************************99999888765516889****************99988865 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.045
     DUF4200  61 raralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                  + a  +aee ++l+   e+ +  l +e ++l ++++ le +l+ +k
  CDO73213.1 844 EEAAKTRAEEVTRLRAAHEEAVSALAQEKSQLLTRLSDLEGELATVK 890
                 45688899999999999999999999999999999999998887765 PP

  == domain 9  score: 16.2 bits;  conditional E-value: 3e-06
     DUF4200  40 eqeleedllkfdkflkendakraralkkaeee....rklkkekeaeikklkaeietlkseiekleekleeykk...YeefLekv 116
                 ++ l++  +  +  + +++a+ +ra++ + ee    r + ++ ++e+++ + ei+ l++++e++++++ +y k   +++fL  v
  CDO73213.1 916 REDLQKLHEAHNARMHDIEAEHERAMRAMREEldimRAKADDLQQEVARKTMEIQYLEQDQEENQDQITRYVKvfgFKSFLGAV 999
                 67788888999999**************99994444567788899***************************999999999877 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  41.7    0.0071        25      50     272 ..     311     570 ..     295     579 .. 0.42
   2 ?    3.8  16.3    0.0098        35     184     273 ..     570     656 ..     556     662 .. 0.86
   3 ?    9.3  25.9   0.00021      0.75     120     279 ..     663     819 ..     656     825 .. 0.76
   4 ?    8.7   1.5   0.00033       1.2     175     239 ..     829     893 ..     817     900 .. 0.88
   5 ?    2.6  10.2     0.024        85     181     253 ..     911     983 ..     904     990 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0071
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXX.................... CS
    Filament  50 elyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke.......lnkreevEaelkalrkdldeatlarvd.................... 121
                 +  +++l+++ ++l + +++ + l+ el +l+++l+  ++  e +        + + +vE+el+alr  l++a+ +++                     
  CDO73213.1 311 AELQSKLDDANSALSSKSEAVSGLESELASLKASLQAAQAEAEAKssavanlEAAKANVEEELAALRDSLEKAQSSQSGesaqvealhaeleaskaana 409
                 334445555555555555555555555555555555555555555555544444555555555555555555555555500000000000000000000 PP

                 ........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX... CS
    Filament 122 ........LekkvesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaekns... 208
                         L++++e+L+ e+a  k++ e+ ++     v+ + +  e d a  l  ++ l  i+a+ ++l +++ + a +  ++k++el+e++++ +   
  CDO73213.1 410 aqvelvtsLQAQIEALQAEVAAAKENLEA-IRASSDAVAaAAAASESDRAALLQAKADLDAIKAESDALKAEQGQ-ALAAAQAKIQELEEKSARVDali 506
                 00001111455555555555555555443.333333333344455555555555555555555555554433332.22333455555544444433111 PP

                 XXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 209 ealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeela 272
                 +++++ k+e +e   ++ +le+e+ +lk ++++ +++ + + +rl+   e+l ++ ++++++l+
  CDO73213.1 507 SEIEELKRENEEKANKVSELEVEILELKDEQETSNDAHEKTLARLKLLEEELAKSAAAVQQALE 570
                 3334444455555555555555555555555555555444444444444444444444444444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0098
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 184 knreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelae 273
                 +  +  e+ y +++ee    ++ ++e+l +a  e +el+ ++ +le+el+++ ++ +  +a+ + + e+++++l++ ++  +e+e++l+e
  CDO73213.1 570 EDAKAKEAEYAARTEET---SKAHQEQLDKAAAEHAELQAKLSALEVELAQVIAAGERAKAEASAAAEEHQRQLADSEKLRQEVEAKLSE 656
                 44455677777777765...5678999999999****************************************************99976 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-H CS
    Filament 120 vdLekkvesLkeelaflkkvheeEvkelqkqvs.eqvlvevda..arkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsak 215
                 ++Le++  + +e +a +k  h++ ++e  ++++ e   +  ++  + + + +++++++ra + + +e+ ++e ++  +s+++ l+++ +++  +l++++
  CDO73213.1 663 TELESQEAKYNEKVAAVKAEHDQLLQEAFERAKnEAGDLHGQDlqKLRAESQAAIEQLRASHQHTIEELKAEHQAALESQVKALEKQLSHQALELKATQ 761
                 6899999999************99999988887544444444411444568889999999999999999999999999999999999999999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 216 eeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireema 279
                 e++++++  + s + eles + q +  ++ +a l+++ + e       +++l ++l+++re+ a
  CDO73213.1 762 EDLAKAKAALASVTQELESTRTQLEEARQLVASLDKTDKDE------VIAQLTRDLSNLREDHA 819
                 99999999999999999999988888888887777665544......45555555555555544 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 175 raqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqk 239
                 +    e+a++  +e+ee  k++ ee+++  + ++ea+++  +e ++l  ++  le el+ +k++ 
  CDO73213.1 829 KGSLGEMADNHVKELEEAAKTRAEEVTRLRAAHEEAVSALAQEKSQLLTRLSDLEGELATVKAAL 893
                 55667899999***********************************************9999865 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 181 laeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerl 253
                   + +re++++ +++  +++++  ++++ a+r+++ee+  +r + + l+ e++    + + le+  +e ++++
  CDO73213.1 911 TSSVSREDLQKLHEAHNARMHDIEAEHERAMRAMREELDIMRAKADDLQQEVARKTMEIQYLEQDQEENQDQI 983
                 4555666666666666666666666677777777777777777766666666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3680  (0.205254); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                       263  (0.014669); expected 17.9 (0.001)
Passed Fwd filter:                       161  (0.00897987); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 4.57u 0.48s 00:00:05.05 Elapsed: 00:00:01.00
# Mc/sec: 3040.13
//
Query:       CDO73214.1  [L=190]
Description: hypothetical protein BN946_scf185007.g269 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-38  132.3   0.0    1.5e-38  132.0   0.0    1.0  1  Ras       Ras family
    1.2e-12   48.1   0.0    1.7e-12   47.6   0.0    1.2  1  Roc       Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.15   11.5   0.0    1.2  1  Arf       ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   2.5e-42   1.5e-38      32     161 ..      30     171 ..      24     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 2.5e-42
                 SSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHHHHSTTTSEEEEEEETTTGGG........... CS
         Ras  32 igvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeikrvaeenvpivLvGnKvDlee........... 118
                 + +d+y+++++vdgk+++l +wDTAGqe++++lr+l+y +++++l+++++ s  sfenv+ kw+ ei+++a+ +++ivLvG+K Dl+e           
  CDO73214.1  30 V-FDNYSANVMVDGKTISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPPSFENVRtKWYPEISHHAP-STSIVLVGTKLDLREdpatieklrdr 126
                 5.9*********************************************************9***********.5***********************98 PP

                 .G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 119 .kravsteegeelakelg.lkfletSAktnenveeafeellreil 161
                     +++++g ++a+++g +k+le+SA t+++++++f+e++r++l
  CDO73214.1 127 rMAPIQYSQGVQMARDIGaVKYLECSALTQKGLKTVFDEAIRAVL 171
                 8889*************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   2.8e-16   1.7e-12      48     120 .]      37     113 ..      16     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.8e-16
                 TTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH.HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  48 endkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl.keWlkelkkvagkspvilvgnkiDl 120
                 +   + k+++l +WDtaGqe+++ l+pl + + +++++++      s+en+  +W+ e++++a+++ ++lvg+k+Dl
  CDO73214.1  37 NVMVDGKTISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSlvsPPSFENVrTKWYPEISHHAPSTSIVLVGTKLDL 113
                 34445789*******************************987645578888358*********************95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.15      53     169 ..      40     164 ..      32     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
                 EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS..... CS
         Arf  53 leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelk..... 146
                 +  k++++ +wD  Gqe   +l    +++td+ + +   +    +e+ +++    ++++  ++ ++ +++ K Dl+e+  + e  +   +  ++     
  CDO73214.1  40 VDGKTISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPPSFENVRTKWYPEISHHAPSTSIV-LVGTKLDLREDPATIEKLRDRRMAPIQysqgv 137
                 556999************9999999***************************99999888776655.5699****998666555555555554433333 PP

                 .SSSS...EEEEEEBTTTTBTHHHHHH CS
         Arf 147 .gkrk...leiqkcsavkgeglkegle 169
                   +r+   ++  +csa++++glk  ++
  CDO73214.1 138 qMARDigaVKYLECSALTQKGLKTVFD 164
                 344441115667899999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1514.79
//
Query:       CDO73215.1  [L=447]
Description: hypothetical protein BN946_scf185007.g270 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-20   72.4   0.0    6.1e-20   71.7   0.0    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   3.4e-24   6.1e-20       1     233 []      64     435 ..      64     435 .. 0.80

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.4e-24
                    EEEEESTG.................CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEE CS
                    xxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngq.................aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavls 79 
                    +twNv+                   +      s+r   l  ++t+++aD+ +LQEvd  e  +++l  a++++++a        g  + +g+ +++
     CDO73215.1  64 MTWNVGTLlaqtlvrrelfptsdclK-----ASQREHMLYREITSHNADICCLQEVDRTEKLFPELEEAGYAWVYA-------AGPRKKHGCLIAF 147
                    899**999999999999999665551.....4467788*******************************9999999.......788********** PP

                    CSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE..........................CCCHHGHHHHHHHHHHHHHHHHHHH.....HHTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxx RF
  Exo_endo_phos  80 rfpltslfrrtfiefndlvaalrreplaakleqlni..........................ashrdhdlvrdlqllalllqvealn.....adrg 144
                    r+ + + ++  ++ ++d+ ++      ++ +  ++                             h+ +++ r +q+++ll++v ++      ++r+
     CDO73215.1 148 RRDVYECVCQRVVTYDDEEVRQDGGQQTRRGSSFRTknigslvalrrlgtdddgvivatthlFWHPAYAYERARQAAILLREVVEFRnegseLQRH 243
                    ****99988888888888888888888888888888899***********************666666666666666666665555412222789* PP

                    SEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH................................................................ CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................ RF
  Exo_endo_phos 145 apvivaGDfNarpsdddsrvlrtrglalapap................................................................ 176
                    +p+i+aGDfN+ p+d+ + +l   +l++++                                                                  
     CDO73215.1 244 WPAIIAGDFNFGPDDPAYALLMGEPLLPEQKKrleasyvvhatidptvavdgaapaeeeegaeagendpdriivnarpaqpsdgllsdaelqelfr 339
                    *****************************999*******999999999999999999999988888888888888777777777777666666666 PP

                    ....H............................SSCESCETTTTTTTTTTTEB-BEEE..............EEECHHHCCEEEEEEECCHHEEC. CS
                    ....x............................xxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos 177 ....v............................glyllgggptptyvtraggsrlDri..............laspalalfrsgvlppplalvrr. 225
                        v                                  ++p++t  t+ ++  lD+i              l                     + 
     CDO73215.1 340 rsgsVtsayevgqrqlpgiaesgltfgsrvsvpKVRRGAFEPVYTSFTHYWQAVLDYIfvldapgrdvsivrL---------------------Aq 414
                    6655055555566666677777788889999***************************333333333333332.....................02 PP

                    .............TSSCSSSB CS
                    .............xxxxxxxx RF
  Exo_endo_phos 226 .............ealtlSDH 233
                                  ++++SDH
     CDO73215.1 415 phskeafgeglprKGVCGSDH 435
                    333344666666667899999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3466.43
//
Query:       CDO73216.1  [L=1024]
Description: hypothetical protein BN946_scf185007.g271 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-17   63.9   0.0    3.9e-17   63.1   0.0    1.4  1  RhoGEF    RhoGEF domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   2.2e-21   3.9e-17       3     182 .]      93     280 ..      92     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 2.2e-21
                 HHHHHHHHHHHHHHHHHHHHTHCCCHHCTCCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHH.HHHHHHCHHHH CS
      RhoGEF   3 kElleTErsYvrdLkvlvevylkplselevlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkk.YseYcsnypna 100
                  +l++TE+ Yv+ L  +++++  + s++ +l++ e++++F +ie+i++ + ++ll +L+e     ++ ++ + +gd++++++d+++  Y++Y +++ + 
  CDO73216.1  93 TDLIDTEKVYVELLTGIIRKVAAAWSRS-NLPPPELDTMFRCIESIYKAN-RQLLGKLKEIG---TNPSSPKALGDLLMRWIDDLEGpYTNYANKFIHG 186
                 579*******************888754.7********************.77777788887...6778889************9956*********** PP

                 HHHHHHHHHHHHHHHHHHHHHHTSGGG.............TT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF 101 lkllkelskknkkfkafleeaeerpec.............skldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                  +  +  + +n++++++l   ++ +                  +L++l + P  R+  Y+ L  +llk+t +  +d++ l++ale++ +++ +i+
  CDO73216.1 187 FDDWEPVQ-SNPRVRTILAMFSATNPPplpssapahpsepPIWTLDELFLLPRGRIKYYKKLYGRLLKSTTPGRSDHRLLSSALEKLDKLLATID 280
                 ******76.9****999999877655578999*****99999***********************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1024 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6925.63
//
Query:       CDO73217.1  [L=265]
Description: hypothetical protein BN946_scf185007.g272 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1971.66
//
Query:       CDO73218.1  [L=702]
Description: hypothetical protein BN946_scf185007.g273 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-11   44.1   0.0    2.2e-11   43.3   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.093   12.7   0.1       0.17   11.9   0.1    1.4  1  FlxA          FlxA-like protein
       0.15   12.2   1.8       0.39   10.9   1.8    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.6e-15   2.2e-11       2     222 ..     194     423 ..     189     435 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.6e-15
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltses...qefiafplraeilihedfsspssslwilq 95 
                   d+ff+   +   ilh+psfl +     +++ +y +p+ l ai+a +++ +++e +++   +++++    +      + +++i++ + +  + + + q
    CDO73218.1 194 DIFFKCDPCGSRILHRPSFLASM-ALHPKDPNYPHPAILHAICASASRWASQEVATMPDGTRRDKfadLH----VSKTRSYIDRTMATGQDIFPVMQ 285
                   555555223337***********.99999999*************************9999998844222....237778887788888888***** PP

  Fungal_trans  96 sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks.......lwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqinlp 184
                   +  +l++y    +++  ++ + g   r a+ l+L+     + +          + +++ + esrrR+ww++ ++D+++++  G ++  +d+ +i ++
    CDO73218.1 286 ACIILSWYFYQEGRWVEVWIFAGFQTRAAVPLRLNYPGTFSVTGAsspgaylAPPKDFRDLESRRRTWWMTIMFDRIVSV--GGWVhAMDERDIGTE 380
                   ***********************************666665544499*****99999999*****************986..7888668*******9 PP

  Fungal_trans 185 LPcddddlwesddaseetlvetk.......lsneeksrkiasfll 222
                   +P     +++ ++a+   ++++        +++++  +++ +fl 
    CDO73218.1 381 FPLRR--VDFDTNANVPPNPQDLfspdlftRHPPMYTDSFILFLK 423
                   99544..58888888888887776677544444444444444444 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.9e-05      0.17      56      93 ..      67     104 ..      64     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
        FlxA  56 aQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqe 93 
                 ++I +l+ QIaql++q ++ ++ ++ s+  + ++++ +
  CDO73218.1  67 EKIRMLEDQIAQLKSQLENSRNYNSRSTSPRHARNSHN 104
                 78999999999999999988888877777666666655 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.8   6.6e-05      0.39      12      25 ..      14      27 ..      10      29 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.6e-05
                --STSSSS-HHHHH CS
     Zn_clus 12 KCdakkPaCsnCkk 25
                KCda +P+C+ C+k
  CDO73218.1 14 KCDAARPHCTTCVK 27
                9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5026.63
//
Query:       CDO73219.1  [L=259]
Description: hypothetical protein BN946_scf185007.g274 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   50.5  21.1    2.1e-05   24.3   0.6    3.8  4  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    3.1e-10   39.8  26.2    8.7e-07   28.8   2.1    3.9  4  zf_CCCH_4  Zinc finger domain
    5.5e-07   30.2  16.4    0.00048   20.8   0.5    4.0  4  Torus      Torus domain
    2.1e-05   24.2   0.4    2.1e-05   24.2   0.4    4.2  5  zf-CCCH_4  CCCH-type zinc finger
    0.00022   21.1   4.3    0.00022   21.1   4.3    2.2  2  zf-CCHC    Zinc knuckle
     0.0018   18.7  22.5     0.0072   16.8   0.3    4.2  4  zf-CCCH_2  RNA-binding, Nab2-type zinc finger
  ------ inclusion threshold ------
      0.016   15.2   1.9      0.032   14.2   1.9    1.6  1  zf-CCHC_3  Zinc knuckle
       0.94    9.7  12.6        2.3    8.5   0.4    3.3  3  zf-CCCH_3  Zinc-finger containing family
        1.3    8.9   9.4       0.14   12.0   3.6    2.6  2  zf-CCHC_2  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.6   1.1e-08   2.1e-05       5      25 ..      90     109 ..      89     111 .. 0.94
   2 !   21.7   0.8   7.1e-08   0.00014       9      27 .]     122     140 ..     115     140 .. 0.87
   3 !   18.2   1.7   8.8e-07    0.0018       5      27 .]     145     166 ..     141     166 .. 0.91
   4 ?   -3.7   0.2       6.5   1.3e+04       6      10 ..     248     252 ..     248     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.1e-08
                 CBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaH 25 
                  C++++r G Ck Gd+C F H
  CDO73219.1  90 VCKHWLR-GLCKKGDACEFLH 109
                 6******.************* PP

  == domain 2  score: 21.7 bits;  conditional E-value: 7.1e-08
                 HHHHS--TTGGG-SSBSCS CS
     zf-CCCH   9 fmrtGyCkyGdrCkFaHgq 27 
                 ++++GyC+ Gd C +aH++
  CDO73219.1 122 YAKYGYCSAGDECLYAHPK 140
                 9****************96 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 8.8e-07
                 CBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaHgq 27 
                 +C++++r G+Ck G+ C++ H++
  CDO73219.1 145 ECPDYNR-GFCKLGPDCPRGHPK 166
                 7******.**********99985 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 6.5
                 BCHHH CS
     zf-CCCH   6 Crffm 10 
                 Cr++m
  CDO73219.1 248 CRNHM 252
                 99997 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   2.1   4.4e-10   8.7e-07       1      19 []      91     109 ..      91     109 .. 0.99
   2 !   14.9   4.3     1e-05      0.02       4      19 .]     122     138 ..     119     138 .. 0.95
   3 !   10.5   1.0   0.00026      0.52       1      16 [.     146     161 ..     146     161 .. 0.96
   4 ?   -2.9   0.1       4.2   8.3e+03      13      16 ..     246     249 ..     244     250 .. 0.54

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4.4e-10
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck++l+G CkkGd+C F+H
  CDO73219.1  91 CKHWLRGLCKKGDACEFLH 109
                 ******************* PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1e-05
   zf_CCCH_4   4 flq.GtCkkGdkCrFaH 19 
                 +++ G+C+ Gd C +aH
  CDO73219.1 122 YAKyGYCSAGDECLYAH 138
                 8999************* PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00026
   zf_CCCH_4   1 CkfflqGtCkkGdkCr 16 
                 C  + +G Ck G  C+
  CDO73219.1 146 CPDYNRGFCKLGPDCP 161
                 99*************7 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.2
   zf_CCCH_4  13 dkCr 16 
                 ++Cr
  CDO73219.1 246 NHCR 249
                 5665 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.3     6e+02      73     100 ..      44      72 ..      18      78 .. 0.68
   2 !   20.8   0.5   2.4e-07   0.00048      64      92 ..      82     110 ..      62     117 .. 0.81
   3 !   11.0   0.8   0.00027      0.54      72      91 ..     118     138 ..     111     145 .. 0.86
   4 !    7.9   0.4    0.0024       4.8      69      94 ..     142     167 ..     139     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.3
                 -HHHHHT--SSGG.G-SSB-S---SS--- CS
       Torus  73 ClfFarGlCakGk.kCeylHrlPteedlk 100
                  l  +   C+ G  +C   H+ P+ ++++
  CDO73219.1  44 RLSLTATGCPLGPlHCPLRHTTPSVQNFQ 72 
                 344555557777549********998865 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.4e-07
                 HHHSTT--B-HHHHHT--SSGGG-SSB-S CS
       Torus  64 adkekesyfClfFarGlCakGkkCeylHr 92 
                  ++e+ +++C ++ rGlC+kG  Ce+lH+
  CDO73219.1  82 RERERLATVCKHWLRGLCKKGDACEFLHE 110
                 45566779********************7 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00027
                 B-HHHHH.T--SSGGG-SSB- CS
       Torus  72 fClfFar.GlCakGkkCeylH 91 
                  C ++a+ G+C+ G +C y H
  CDO73219.1 118 ECWWYAKyGYCSAGDECLYAH 138
                 5999*998************* PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0024
                 T--B-HHHHHT--SSGGG-SSB-S-- CS
       Torus  69 esyfClfFarGlCakGkkCeylHrlP 94 
                 +++ C  + rG+C+ G +C   H  P
  CDO73219.1 142 RKIECPDYNRGFCKLGPDCPRGHPKP 167
                 5677999************9888655 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.38   7.6e+02       3      21 ..      43      63 ..      41      63 .. 0.76
   2 !   24.2   0.4   1.1e-08   2.1e-05       2      22 .]      90     110 ..      89     110 .. 0.96
   3 ?    4.3   1.4     0.019        37       5      22 .]     121     139 ..     118     139 .. 0.80
   4 ?   -1.8   1.8       1.5   2.9e+03       3      17 ..     146     160 ..     145     161 .. 0.86
   5 ?   -3.6   0.4       5.3     1e+04      16      18 ..     247     249 ..     246     250 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.38
   zf-CCCH_4  3 CpyfakG.sCrfGd.nCrFsH 21
                C+  ++  +C  G+ +C  +H
  CDO73219.1 43 CRLSLTAtGCPLGPlHCPLRH 63
                666667778999999998777 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.1e-08
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C+++++G C+ Gd C F+H+
  CDO73219.1  90 VCKHWLRGLCKKGDACEFLHE 110
                 8*******************7 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.019
   zf-CCCH_4   5 yfa.kGsCrfGdnCrFsHd 22 
                  +a  G C  Gd C ++H+
  CDO73219.1 121 WYAkYGYCSAGDECLYAHP 139
                 4443789***********7 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.5
   zf-CCCH_4   3 CpyfakGsCrfGdnC 17 
                 Cp + +G C+ G+ C
  CDO73219.1 146 CPDYNRGFCKLGPDC 160
                 99999999*988766 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 5.3
   zf-CCCH_4  16 nCr 18 
                 +Cr
  CDO73219.1 247 HCR 249
                 555 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.7         9   1.8e+04      15      17 ..     159     161 ..     158     161 .. 0.88
   2 !   21.1   4.3   1.1e-07   0.00022       2      17 ..     234     249 ..     233     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9
                 TST CS
     zf-CCHC  15 dCp 17 
                 dCp
  CDO73219.1 159 DCP 161
                 9*9 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.1e-07
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C++CGe GH+a+ C 
  CDO73219.1 234 VCFKCGEKGHYANHCR 249
                 7************997 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   1.1   0.00083       1.6       2      17 ..      91     109 ..      91     109 .. 0.98
   2 !   16.8   0.3   3.6e-06    0.0072       2      18 .]     119     139 ..     118     139 .. 0.94
   3 ?    4.8   3.9     0.022        43       6      18 .]     150     165 ..     145     165 .. 0.77
   4 ?   -2.7   0.1         5   9.9e+03       6      10 ..     245     250 ..     243     250 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00083
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C+++    C +++ C F H
  CDO73219.1  91 CKHWLRglCkKGDACEFLH 109
                 ***************9999 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3.6e-06
   zf-CCCH_2   2 Crffpn...C.tnpkCpFaHP 18 
                 C+++++   C  +++C +aHP
  CDO73219.1 119 CWWYAKygyCsAGDECLYAHP 139
                 999999999***********9 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.022
   zf-CCCH_2   6 pn..C.tnpkCpFaHP 18 
                 +   C  +p+Cp  HP
  CDO73219.1 150 NRgfCkLGPDCPRGHP 165
                 5566999999999999 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5
   zf-CCCH_2   6 pn.Ctn 10 
                 +n C+n
  CDO73219.1 245 ANhCRN 250
                 455876 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.9   1.6e-05     0.032       4      28 ..     232     257 ..     229     259 .] 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
   zf-CCHC_3   4 saaCQkClkkGHwtYECkn.agerky 28 
                 +++C kC++kGH++  C+n  g ++y
  CDO73219.1 232 DVVCFKCGEKGHYANHCRNhMGYKPY 257
                 678***************86555555 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.46   9.2e+02      77      90 ..      56      69 ..      31      86 .. 0.62
   2 ?    8.5   0.4    0.0011       2.3       8      27 ..      91     110 ..      84     114 .. 0.72
   3 ?    3.8   5.1     0.033        66       5      28 ..     116     140 ..     111     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.46
   zf-CCCH_3 77 klhcaflhekprav 90
                 lhc++ h++p ++
  CDO73219.1 56 PLHCPLRHTTPSVQ 69
                46888888877753 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0011
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                 c  +    c+kGd c f he
  CDO73219.1  91 CKHWLRGLCKKGDACEFLHE 110
                 55666667888888888776 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.033
   zf-CCCH_3   5 gddcyffy.ystctkGdscpfrhee 28 
                   +c+++  y  c+ Gd+c + h +
  CDO73219.1 116 MPECWWYAkYGYCSAGDECLYAHPK 140
                 5689988559*************76 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       4.1   8.3e+03      18      20 ..     159     161 ..     159     162 .. 0.84
   2 ?   12.0   3.6   6.9e-05      0.14       5      20 ..     234     249 ..     234     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.1
   zf-CCHC_2  18 dCP 20 
                 dCP
  CDO73219.1 159 DCP 161
                 8*9 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.9e-05
   zf-CCHC_2   5 vChiCgkkGHyIqdCP 20 
                 vC  Cg kGHy ++C+
  CDO73219.1 234 VCFKCGEKGHYANHCR 249
                 899************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1749.24
//
Query:       CDO73220.1  [L=475]
Description: hypothetical protein BN946_scf185007.g275 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0062   15.8   0.2     0.0097   15.1   0.2    1.2  1  Herpes_UL37_1  Herpesvirus UL37 tegument protein


Domain annotation for each model (and alignments):
>> Herpes_UL37_1  Herpesvirus UL37 tegument protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   5.4e-07    0.0097     109     236 ..     234     363 ..     221     367 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.4e-07
                    HHHHHHHHHT-HHHHHHHHHTT.--S..--TTSHHHHHHHHHHHHHHHH.HHHHHHHHSS---SSS-T-----TTHHHHGGGSGGGGGG...TTSH CS
  Herpes_UL37_1 109 vlkdlvaavtgsetlhaLsank.Lrt..saklGPvsvrqliveWidvye.taiesaltyapetlleekeasvnlGdaaaaLtqkkfeli...ydlP 197
                    vl  + + vt+++t+h  +    +r   s+ +        ++ W d ye t  +++ t   + +l e    +++G + a+L +    +i   + l 
     CDO73220.1 234 VLDWVHVSVTDEDTMHLSDFKVfMRNifSTDFSQNL--LKVTIWPDNYEeTPRRHPPTAGARASLME---VIPVGPVLASLRHLSIHVIptqFSLS 324
                    555667789999999865543313431144444433..34677*****9567789999888888877...79***********99999888899** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHS-SSS-HHHHHHH CS
  Herpes_UL37_1 198 fvqeGirllalvsgwvapfsvmyrridnasltPLtraLf 236
                    f  + +r+ +++s  +  f+v     + + ltP +   f
     CDO73220.1 325 FTDDNVRVFTQASPELRAFAVLCIDPQLSLLTPHALLFF 363
                    *********************999999999999765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3439.46
//
Query:       CDO73221.1  [L=1058]
Description: hypothetical protein BN946_scf185007.g276 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-16   59.1   0.0    8.5e-12   45.5   0.0    2.6  2  Peptidase_M16_C  Peptidase M16 inactive domain
    1.5e-11   44.5   0.1    1.7e-09   37.8   0.0    2.4  2  Peptidase_M16    Insulinase (Peptidase family M16)
    0.00011   21.4   1.2     0.0018   17.4   1.2    2.2  1  M16C_assoc       Peptidase M16C associated
  ------ inclusion threshold ------
      0.022   14.6   0.0       0.16   11.8   0.0    2.4  2  DUF1949          Domain of unknown function (DUF1949)
      0.091   12.5   0.0        0.2   11.4   0.0    1.5  1  RQC              RQC domain


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   2.4e-15   8.5e-12       2     181 ..     207     403 ..     207     404 .. 0.78
   2 !   10.9   0.0   9.6e-05      0.35      90     181 ..     845     938 ..     760     940 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 2.4e-15
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HH..HHHHHHHHHHTTSTHHSH................CSGSCTSSSSSGGGSSEEEEEEEESSSS CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdhe..elvkliekyfgdlkaska................ppakptgepltpatlkkppvvlkkldee 77 
                      lt ++++e+++++Y p n++l+i G++      l+++++   ++++ +                    + p+  +++ a+  k++v  +++de+
       CDO73221.1 207 LTIDQIREYHHTYYVPHNLTLIITGKLASGtqSLLDVVQ---KEVEPRIVehhqnkgskppgwkrpFVETPSADRKPIAQTVKETVEFPEKDES 297
                      689**********************98874335666655...44443322445799*********83444444444556679999********* PP

                      SEEEEEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTS.ESEEEEEEEEES...SCEEEEEEEEEECT.THHHHHHHHHHHHHHH CS
  Peptidase_M16_C  78 qahlslafegpskendeddlalavlntlLgggmesrLytnlrekegl.aysvsafndsyr...dsglfgisatadpe.nveevvevilkelrkl 166
                         l+l+f+gp+ +   +  al++l t+L + +  +L++++ e e++ ++ ++++ d      d   + +++ + p  +++   e +++ lr++
       CDO73221.1 298 VGELQLGFLGPPPTAFLERKALDILGTYLTSSAVAPLNKEYVEIENPlCTYIYFGEDTRAtyvD---LPVYVGSVPTeHLDTFDEKLRASLRRI 388
                      ******************************************9999998888888342221222...33333333335999999********** PP

                      HHHTS-HHHHHHHHH CS
  Peptidase_M16_C 167 kkeglteeelerakn 181
                      ++egl+ + +   +n
       CDO73221.1 389 ADEGLDMDRMAMVIN 403
                      ****99888776665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.6e-05
                      T.....CTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHT..S-HHHH CS
  Peptidase_M16_C  90 k.....endeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeg..lteeel 176
                            + ++++ a+ v  ++L  + es L + +r  +glay++ +++d     gl  ++++    n  e+ + + ++++ l++    l+e  l
       CDO73221.1 845 AkgiqgWAHPEYPAMRVAVEVLNAT-ESFLWRYIR-GSGLAYGAHCGLDLEA--GLVNFTLYRSA-NSMEAFKQAANVIKGLTDGSiaLDETVL 933
                      23334479*****************.*********.*************666..99999888874.4668888889999999988656777777 PP

                      HHHHH CS
  Peptidase_M16_C 177 erakn 181
                      ++ak+
       CDO73221.1 934 DAAKS 938
                      77775 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   4.7e-13   1.7e-09      31     107 ..      69     148 ..      63     166 .. 0.88
   2 ?    4.0   0.0     0.013        46      65     119 ..     658     710 ..     645     729 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.7e-13
                    TTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEE..EEEEESSEEEEEEEEEGGG.HHHHHHHHHHHHHSBTTSHHHHHH CS
  Peptidase_M16  31 nGlAHllehmafkgTkkypsnklaeeleklGgsl..nAttsrentvYyvevlskd.lekaldvladvfkaplleesever 107
                    +G+ H leh++f+g++kyp ++++  l++ G s   nA t++++t+Y+v+++ ++ + ++l +  d +  p+l++  + +
     CDO73221.1  69 SGCPHTLEHLVFMGSEKYPYKGIIDHLANRGFSNgtNAWTDTDHTAYTVSTAGEQgFLQLLPIYVDHILYPTLTKAGFIT 148
                    799******************************999**************999998888888888888888888766555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
                    EEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHH CS
  Peptidase_M16  65 nAttsrentvYyvevlskdlekaldvladvfkaplleesevererkvvekeveav 119
                    nA+t+  +    ++v++ + e+a++ l d ++ ++++++ ++ ++ ++++ + ++
     CDO73221.1 658 NAFTE--TVRVSIKVEAAQYENAIAWLKDLVYGSEFDKERLQVTVAKIQQSLPEM 710
                    66664..445568888999************************888888776655 PP

>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.2   5.1e-07    0.0018       2     210 ..     479     708 ..     479     748 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.1e-07
  M16C_assoc   2 kPdeeleeekekeekerLaakkaslseeekekiveetkeLkerQekpds.edlscLPtLkleDIprei..........teleeek.............. 75 
                 kP+ e+++++e+ ek+r+aa ka+l +e +++  +  +e k++ ek+ + e l + P  +++ I   +          +     +              
  CDO73221.1 479 KPSGEMADRLEQVEKTRIAAQKAKLGPEGLAECERILEEAKKEHEKEIPkEILTSFPVPSVKSIAWIPvqsfqesvkgK-----Erappgqqpnselak 572
                 69999999******************99999999999999999999999999999998888887766655577554440.....244555556666654 PP

  M16C_assoc  76 eveidgvk....vllhevpTNgivYfrllfdlsdlpeellpylpLftdvltelgtkkkdyeeleqeiklktGGisasvsvsssped.ldkyeegfvlsg 169
                 ++e+dg +    v++ +v+  + v ++++f+l +lp+ l+py++ + +++ +l  k+ + e l++e   +   ++ ++ +++     ++ ++e++ +s 
  CDO73221.1 573 HIEQDGSPlpffVQYDHVK-SDFVTIHAYFSLANLPDSLRPYISAYLSSFFSLPVKRSTGERLNHEEVVHR--LDSDTVSYEVACGvNNAFTETVRVSI 668
                 3335555533324555555.566679**************************************9977664..55555555555433566889****** PP

  M16C_assoc 170 kaLdrnvekmfeLlreilletkfddkerlkelvkesksrle 210
                 k+   + e+++  l++++  ++fd kerl+  v++++++l 
  CDO73221.1 669 KVEAAQYENAIAWLKDLVYGSEFD-KERLQVTVAKIQQSLP 708
                 ***********************8.7899999999988874 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.61   2.2e+03      36      50 ..     368     382 ..     364     384 .. 0.88
   2 ?   11.8   0.0   4.5e-05      0.16      25      55 ..     658     688 ..     656     689 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.61
     DUF1949  36 avpeeeveafkaaLt 50 
                  vp e++++f ++L+
  CDO73221.1 368 SVPTEHLDTFDEKLR 382
                 69**********997 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.5e-05
     DUF1949  25 teYtddVtltlavpeeeveafkaaLtdltsG 55 
                   +t++V  ++ v++++ e+++a+L dl  G
  CDO73221.1 658 NAFTETVRVSIKVEAAQYENAIAWLKDLVYG 688
                 579***********************99655 PP

>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.6e-05       0.2      22      70 ..     418     466 ..     406     470 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.6e-05
                 TS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHH CS
         RQC  22 gqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirq 70 
                 g+ f  + i d L Gs++ + +   +d+++ +  +k ++ k+w +l+r+
  CDO73221.1 418 GDTFSGNVITDFLYGSEDGSDLAPSMDEINLYAQLKTWTSKQWSDLMRK 466
                 56788899***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7156.16
//
Query:       CDO73222.1  [L=365]
Description: hypothetical protein BN946_scf185007.g277 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-19   69.2   1.0    4.3e-19   68.1   1.0    1.6  1  NUFIP1           Nuclear fragile X mental retardation-interac
  ------ inclusion threshold ------
      0.014   15.1   0.9      0.029   14.1   0.9    1.4  1  MAP7             MAP7 (E-MAP-115) family
        2.5    6.8   4.6        3.9    6.2   4.6    1.2  1  API5             Apoptosis inhibitory protein 5 (API5)


Domain annotation for each model (and alignments):
>> NUFIP1  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   1.0   7.3e-23   4.3e-19       3      53 .]      60     110 ..      59     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 7.3e-23
      NUFIP1   3 eknvkiegtsitleTpeeIakWreERkKnyPtkaniekkkkkeeekkkrge 53 
                 +k+v i+gtsi l+Tpe I++W +ER+K++Ptk+n+e k++k+ e+ +rg+
  CDO73222.1  60 QKPVFIQGTSIRLDTPEAIEAWLAERRKRFPTKENVEDKERKMREAVERGQ 110
                 68999********************************************97 PP

>> MAP7  MAP7 (E-MAP-115) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   4.8e-06     0.029      12      50 ..      71     114 ..      63     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-06
        MAP7  12 gttdaeeAsriLaEkrrqaReqkereEqereekeeeer.....l 50 
                 +  ++e  +  LaE+r+    + + e++er+ +e  er      
  CDO73222.1  71 RLDTPEAIEAWLAERRKRFPTKENVEDKERKMREAVERgqipfD 114
                 55677888899************************998665552 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.6   0.00065       3.9     451     519 .]      85     152 ..      48     153 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00065
        API5 451 akrkaaitfngsesskaakkargekkqrqqyvppsgklsnkanessgkgrgsgsrgrgrg.gggrGrGrG 519
                  +++ +++  ++ + k++k +++ ++ + ++   s++  ++a +  g + gs+++grg++ g+grGrGrG
  CDO73222.1  85 RRKRFPTK--ENVEDKERKMREAVERGQIPFDDGSRRKRKRADDGPGDRSGSQRGGRGGHrGRGRGRGRG 152
                 33333333..443444444444555555566666666666666655555555555555534666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2631.08
//
Query:       CDO73223.1  [L=324]
Description: hypothetical protein BN946_scf185007.g278 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-42  143.6   9.0    2.3e-16   59.4   0.1    3.2  3  KH_1      KH domain
    6.5e-11   42.0   0.1     0.0051   16.7   0.0    3.5  4  KH_4      KH domain
    3.1e-10   39.7   3.2      0.018   14.8   0.0    3.4  3  KH_2      KH domain
    1.9e-05   24.6   3.3      0.021   14.9   0.1    3.5  3  KH_5      NusA-like KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.1     8e-15   3.6e-11       3      65 ..      31      92 ..      29      93 .. 0.92
   2 !   46.1   0.8   7.3e-16   3.3e-12       2      64 ..     115     177 ..     114     179 .. 0.92
   3 !   59.4   0.1     5e-20   2.3e-16       1      65 [.     237     301 ..     237     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 8e-15
                EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHHH CS
        KH_1  3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkelie 65
                r lv ++ +g iIGk G+n+ e+r++tg+k  v k ++    +er++t++Gs e+v+kA +li 
  CDO73223.1 31 RALVSTKDAGVIIGKAGKNVAELRDQTGVKAGVSKvIPGV--HERVLTVTGSVEGVAKAYALIV 92
                6689999*************************99877776..*******************995 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 7.3e-16
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkeli 64 
                 +r+l+ ++l+g++IG++G +Ik I++ +ga+++    ++ + s+er+v+++Gs +++ +A+e+i
  CDO73223.1 115 IRLLISHNLMGSVIGRNGLKIKAIQDSSGARMVAS-KDMLPqSTERIVEVQGSSDSIGRAIEEI 177
                 5899**********************88***9966.777779*******************998 PP

  == domain 3  score: 59.4 bits;  conditional E-value: 5e-20
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkelie 65 
                 t+ i++Ps++vg+iIG++G +I eIr+ +g kI +   e+++ ++er++ti G+pea ekA+ l++
  CDO73223.1 237 TQNISIPSDMVGCIIGRNGTKITEIRRLSGSKISIA-KEPHDeTGERMFTIVGTPEANEKALFLLY 301
                 5779***********************9******99.777888******************99985 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.4e-05     0.061      25      52 ..      24      51 ..      19      55 .. 0.85
   2 !   16.7   0.0   1.1e-06    0.0051      23      55 ..     107     139 ..      89     141 .. 0.81
   3 ?   -3.4   0.0         2   9.1e+03      26      44 ..     156     174 ..     150     176 .. 0.75
   4 !    7.7   0.1   0.00072       3.2      32      57 ..     239     264 ..     232     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
        KH_4 25 eeeeveielnvegedlGrvIGkrGrtld 52
                ++e+ +++  v+++d G++IGk G+++ 
  CDO73223.1 24 NSETLTLRALVSTKDAGVIIGKAGKNVA 51
                56678899999**************975 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.1e-06
        KH_4  23 eeeeeeveielnvegedlGrvIGkrGrtldAlq 55 
                  +++ ++ i+l ++ + +G vIG++G  ++A+q
  CDO73223.1 107 PTSSPTTAIRLLISHNLMGSVIGRNGLKIKAIQ 139
                 45778999************************9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2
        KH_4  26 eeeveielnvegedlGrvI 44 
                 ++e+ +e++ +++ +Gr I
  CDO73223.1 156 STERIVEVQGSSDSIGRAI 174
                 5677788888888888755 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00072
        KH_4  32 elnvegedlGrvIGkrGrtldAlqyl 57 
                 ++++ ++ +G +IG++G  ++ ++ l
  CDO73223.1 239 NISIPSDMVGCIIGRNGTKITEIRRL 264
                 78999999*********988877765 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   1.7e-05     0.078      28      55 ..      31      58 ..      22      66 .. 0.83
   2 !   14.8   0.0     4e-06     0.018      25      58 ..     113     146 ..     108     164 .. 0.87
   3 !   11.0   0.1   6.5e-05      0.29      36      59 ..     247     270 ..     235     276 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
                EEEEEESCHHHHHTGGGHHHHHHHHHHH CS
        KH_2 28 iiviresqpgivIGkgGsnikkigkelr 55
                +  + +   g++IGk G+n+ +++ + +
  CDO73223.1 31 RALVSTKDAGVIIGKAGKNVAELRDQTG 58
                556888999**************98876 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4e-06
                 CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2  25 nrviiviresqpgivIGkgGsnikkigkelrkdi 58 
                  ++++ i  + +g vIG++G +ik+i+   + ++
  CDO73223.1 113 TAIRLLISHNLMGSVIGRNGLKIKAIQDSSGARM 146
                 67889999999*****************999998 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 6.5e-05
                 HHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  36 pgivIGkgGsnikkigkelrkdie 59 
                  g +IG++G +i +i+   + +i 
  CDO73223.1 247 VGCIIGRNGTKITEIRRLSGSKIS 270
                 699***************999995 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.031   1.4e+02      13      35 ..      38      55 ..      31      65 .. 0.83
   2 !    5.6   0.0    0.0039        17      18      35 ..     123     140 ..     117     148 .. 0.88
   3 !   14.9   0.1   4.6e-06     0.021      17      50 ..     245     277 ..     237     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.031
        KH_5 13 npnvdpvGaivgkkGsrikavss 35
                +     +G i+gk G+++ ++ +
  CDO73223.1 38 D-----AGVIIGKAGKNVAELRD 55
                4.....89**********98876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0039
        KH_5  18 pvGaivgkkGsrikavss 35 
                  +G+++g++G +ika+ +
  CDO73223.1 123 LMGSVIGRNGLKIKAIQD 140
                 58*************986 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 4.6e-06
        KH_5  17 dpvGaivgkkGsrikavsseLkgekidvvewseD 50 
                 d vG i+g++G++i ++ + L+g ki + ++  D
  CDO73223.1 245 DMVGCIIGRNGTKITEIRR-LSGSKISIAKEPHD 277
                 78**************975.78******998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2454.60
//
Query:       CDO73224.1  [L=200]
Description: hypothetical protein BN946_scf185007.g279 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-11   44.9   0.0    6.9e-10   39.2   0.0    2.3  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   3.9e-14   6.9e-10      10     123 ..      16     119 ..       9     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.9e-14
                    SBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTS.EEEEEHHHHHCCSHHHHHHHHHHCCS-SSH.HHH CS
  Ribosomal_L13  10 qvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgg.lkevtakellekkpeeilekaVkgmLpknk.lgr 103
                    + lgrlas i            ++++  G  +vv+ +e+++++g+  ++k  y++  + ++ ++  +   ++++ p++il +a++gm p+++  g 
     CDO73224.1  16 HLLGRLASII------------SKQILSGQKIVVVRCEEINISGSFFRNKLRYHNFLHKRHiVNPKKSGPFHHRAPSKILYRAIRGMVPHKTaRGA 99 
                    4444444444............445667899*******************999999888884455667789******************8772566 PP

                    HHGCTEEEESSSTTSGGGGS CS
  Ribosomal_L13 104 rrlkrLkvyageehpheaqk 123
                    + l+rLk+++g   p++ +k
     CDO73224.1 100 AALERLKLFEGVPPPYDRKK 119
                    677********998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1420.15
//
Query:       CDO73225.1  [L=126]
Description: hypothetical protein BN946_scf185007.g280 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-14   53.8   0.4    2.7e-14   53.3   0.4    1.3  1  PP-binding    Phosphopantetheine attachment site
      7e-06   26.2   0.3    9.8e-06   25.7   0.3    1.2  1  PP-binding_2  Acyl-carrier
  ------ inclusion threshold ------
       0.22   11.3   1.8       0.61    9.9   1.9    1.9  2  AAA_lid_4     RuvB AAA lid domain


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.4   4.5e-18   2.7e-14       1      67 []      52     119 ..      52     119 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.5e-18
  PP-binding   1 eklrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 ++++++++   +v+++ ++p+++++ dlGlDSl+ave+++a+eeef +eip+++  e +++++ ++y+
  CDO73225.1  52 QRVLDVLKGFEKVDQSKLTPTASFSeDLGLDSLDAVEVVMAVEEEFAIEIPDAEADEIKSVQQAIDYI 119
                 57999999*****************77************************************99997 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.3   1.6e-09   9.8e-06      22      85 ..      57     120 ..      47     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.6e-09
  PP-binding_2  22 vlrkgekvtpsskleelrt.redrlwdgldtvefvedveelfdvivsdevadnfetlqeiadlvv 85 
                   vl+  ekv   skl+   +  ed   d+ld+ve v+ vee f + ++d  ad+++++q+  d++ 
    CDO73225.1  57 VLKGFEKVD-QSKLTPTASfSEDLGLDSLDAVEVVMAVEEEFAIEIPDAEADEIKSVQQAIDYIA 120
                   444455554.5666665541567779*********************************999975 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9    0.0001      0.61      19      42 ..       4      27 ..       1      59 [. 0.81
   2 ?   -1.9   0.0      0.47   2.8e+03      39      54 ..      50      65 ..      44      74 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
   AAA_lid_4 19 veieeegaaeiarRsRGTPRianr 42
                ++ ++ +a++ia Rs  TPR+a  
  CDO73225.1  4 LAARNFAARNIAVRSVATPRLALA 27
                5667789**************964 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.47
   AAA_lid_4 39 ianrLLrRvrDfaqvk 54
                i++r+L  ++ f +v+
  CDO73225.1 50 ITQRVLDVLKGFEKVD 65
                4455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 943.66
//
Query:       CDO73226.1  [L=247]
Description: hypothetical protein BN946_scf185007.g281 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-54  185.7   0.0    1.3e-54  185.3   0.0    1.1  1  SGL           SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.061   13.3   2.9        1.2    9.1   0.2    3.3  3  PQQ           PQQ enzyme repeat
       0.12   12.3   0.0        2.1    8.2   0.0    2.0  2  Phytase-like  Esterase-like activity of phytase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.0   2.3e-58   1.3e-54      54     246 .]      13     207 ..       3     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 2.3e-58
         SGL  54 lvvasksglalldlasgeletlade.eedekpllrfNDgvvdpdGrlwfGtmgdeeakgeevgalyrldpd.gklervldd.ltipNGlawspdgktlY 149
                 l  a ++g+a+++  +++l++l ++ ++  ++ +rfNDg++dp+Gr+++Gt+ ++ ++    g+ly +dp  g++e++  + +t +NGl+w+ dg+t++
  CDO73226.1  13 LACATTYGFAVIE--NSKLRYLSRPiPSAFQAYTRFNDGACDPQGRFVAGTLYNKAHDVP--GQLYIYDPLrGSCELLEPGpFTDSNGLGWTDDGTTML 107
                 56688999***98..458******954466799***********************9999..*********9******9655***************** PP

         SGL 150 laDsltrkiwaydvdaeggklsnrrvfadlkkge....gepDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpak.rvtscaFgGpdlrtLyit 243
                 ++Ds t+ki+ayd+d  +gk+s++rvf+d   ++     +pDGl++D+eG+vw+A+wgg+k++r++ +Gk++ e+ +p++ ++t+c+FgGp+ ++Ly+t
  CDO73226.1 108 FTDSFTNKIYAYDYD--DGKVSAKRVFVDALSQGlpdgTYPDGLCIDKEGGVWSARWGGSKIIRYTREGKMDLEVCFPTAlNITACTFGGPNNDQLYVT 204
                 **************7..5559********99988899888**************************************999****************** PP

         SGL 244 sak 246
                 sa+
  CDO73226.1 205 SAH 207
                 *97 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.37   2.2e+03       6      16 ..      67      77 ..      66      77 .. 0.84
   2 ?    9.1   0.2   0.00021       1.2       4      22 ..     107     126 ..     104     126 .. 0.84
   3 ?    2.4   0.0     0.028   1.7e+02       8      17 ..     223     232 ..     221     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.37
                EETTSEEEEEE CS
         PQQ  6 gsadGylyAlD 16
                ++ +G+ly +D
  CDO73226.1 67 HDVPGQLYIYD 77
                6779*****99 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00021
                 EEE.ETTSEEEEEETTTCCE CS
         PQQ   4 ylg.sadGylyAlDadTGkv 22 
                   + s+ +++yA+D d+Gkv
  CDO73226.1 107 LFTdSFTNKIYAYDYDDGKV 126
                 5566999***********97 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.028
                 TTSEEEEEET CS
         PQQ   8 adGylyAlDa 17 
                 + G+l+A+D+
  CDO73226.1 223 DSGNLFAVDL 232
                 78*******7 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0041        24      63     103 ..      91     129 ..      61     141 .. 0.83
   2 ?    8.2   0.0   0.00034       2.1      14     113 ..     101     189 ..      96     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0041
  Phytase-like  63 fpkkglDpEgiav.apdgtfwvssEggpfilefdad.Gkllre 103
                   f    +D+ g+ + +++ t+++++ + + i+ +d d Gk+ ++
    CDO73226.1  91 F----TDSNGLGWtDDGTTMLFTDSFTNKIYAYDYDdGKVSAK 129
                   4....699999996667789**************998*99443 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00034
  Phytase-like  14 kdgrfyalsDrgsknsarfytlkldldadklgkveitevtplkdpdgapfpkkglDpEgiavapdgtfwvssEggpfilefdadGkllrelplpael 110
                   +dg+ ++ +D+      ++y +++d      gkv+ ++v     ++g  + ++g+ p g+ ++++g++w +  gg  i++++++Gk+  e+  p +l
    CDO73226.1 101 DDGTTMLFTDSFT---NKIYAYDYDD-----GKVSAKRVFVDALSQG--L-PDGTYPDGLCIDKEGGVWSARWGGSKIIRYTREGKMDLEVCFPTAL 186
                   6666677777777...6777777777.....4444444333333333..2.23555889****************************8888888888 PP

  Phytase-like 111 lpa 113
                   +++
    CDO73226.1 187 NIT 189
                   665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1816.51
//
Query:       CDO73227.1  [L=302]
Description: hypothetical protein BN946_scf185007.g282 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-32  111.8   0.3    1.1e-29  103.2   0.0    2.8  2  Ribosomal_L17  Ribosomal protein L17


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0     6e-34   1.1e-29       1      94 []      20     133 ..      20     133 .. 0.85
   2 ?   -1.6   0.0       0.3   5.4e+03      25      38 ..     227     240 ..     187     268 .. 0.69

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 6e-34
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHH.................H-SHHHHHHHHHHS...-HHHHHHHTHHHHTSS--S--EEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlak.................kgelaarrkalayl...alvkkLfeelapryadrngGYtRil 76 
                    +lrnlvtsLl+he+I+tTl+kAk ++++aek+ ++ +                 kg+l+a r+a+ +l    lv++Lf+ela+rya+r+gGYtRi+
     CDO73227.1  20 MLRNLVTSLLQHEQIKTTLPKAKDAARMAEKVRQTIVrvsgnettlpqiitlgkKGDLSAFRRATGFLldqSLVPRLFTELAQRYAQRPGGYTRIH 115
                    89****************************9765555344444444444444446689999999999955449*********************** PP

                    EEEE-TTTH-EEEEEEE- CS
  Ribosomal_L17  77 klgprrgDaaemailelV 94 
                    k+g+r gD+a++ailelV
     CDO73227.1 116 KFGNRPGDNAPHAILELV 133
                    *****************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.3
                    HHHHHHHHHHHHHH CS
  Ribosomal_L17  25 lrklaeklitlakk 38 
                    +++la k i+ ak+
     CDO73227.1 227 AQPLALKEIAAAKQ 240
                    34555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2166.81
//
Query:       CDO73228.1  [L=310]
Description: hypothetical protein BN946_scf185007.g283 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.053   13.2   0.0        0.1   12.3   0.0    1.5  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-06       0.1     171     257 ..     211     304 ..     196     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-06
                 TEEEEEEHHHHHHC-E.....EECHCCCCCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THS....HHHHHHHHCCC-SEEEES-H CS
        GDPD 171 lpllflteggteaead....ssleraakfakadallgevsavaeglgdpdlVkraksrglvvhvytvnned....eeemkrlleagvdgvitDfp 257
                  pl++lt++  + + d     +  +++++a  ++  g++   +++ +++++V +a++rg++   +    ++    ++ ++ lle g d++  D+ 
  CDO73228.1 211 APLTQLTDTSLNTTWDptlsPLASTDYAVAIGWNGIGNITDEQKA-NITRFVGDAHARGIAARFWDTPAWPvfarQNIWRALLEGGADWLNADDL 304
                 5777777655554444777867779****************9999.68*****************88888899999************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2082.80
//
Query:       CDO73229.1  [L=437]
Description: hypothetical protein BN946_scf185007.g284 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-31  108.1   0.3      4e-31  107.1   0.3    1.5  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    5.7e-16   58.7   0.0    2.9e-12   46.7   0.0    2.4  2  ADH_zinc_N       Zinc-binding dehydrogenase
    2.5e-05   23.7   0.0    4.2e-05   23.0   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    2.7e-05   24.0   0.0    9.1e-05   22.3   0.0    1.8  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.032   14.5   0.0      0.056   13.7   0.0    1.3  1  TrkA_N           TrkA-N domain
      0.045   13.9   0.4      0.094   12.9   0.4    1.5  1  FANCL_C          FANCL C-terminal domain
      0.056   14.1   0.0       0.16   12.7   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
       0.11   13.3   0.0       0.32   11.7   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
       0.36   10.8   0.0       0.36   10.8   0.0    2.2  3  ADH_N_assoc      Alcohol dehydrogenase GroES-associated


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.3     2e-34     4e-31       1     106 [.      56     180 ..      56     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 2e-34
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-...............TTB CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC...............eea 84 
                 p++v++kv+ ++iCgsDlh+++g + ++ + + ilGHE++G+v+++gp+vk+l+vG+rVv++++i+cgeC++Ck++ +++C               ++a
  CDO73229.1  56 PDDVIVKVTGTTICGSDLHLYHG-EIVNLQKGDILGHEFMGVVDKIGPNVKNLQVGQRVVASFQIACGECEYCKQKLSSFCdrtnpsslqnamyghRDA 153
                 689********************.8*********************************************************************99999 PP

                 EETTTS.....S-SSSBSEEEECGGGE CS
       ADH_N  85 kllgvs.....ldGgfaeyvvvpekkl 106
                 +++g+s     + Gg+aeyv vp+ ++
  CDO73229.1 154 GFFGYShftggFAGGQAEYVRVPKGNV 180
                 99999999999************7665 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.4e-15   2.9e-12       1      65 [.     226     290 ..     226     301 .. 0.91
   2 !    9.6   0.0   0.00043      0.86      70     116 ..     315     362 ..     308     375 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.4e-15
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEES CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfec 65 
                 ++Gl++ q+Ak+ Ga +vi++d+ +e+l++a++ G++ v++ ++  d+v+r++e+  ++g+dv+++c
  CDO73229.1 226 PIGLCVTQFAKMKGAkRVIGIDRVPERLKKAQEHGVE-VLDFSQHsDVVKRLQEIA-PGGLDVALDC 290
                 79*********************************75.66766777**********.77*******9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00043
                 HHHHHHHHCEEEEEEEEECSC..TSSEEEEEHHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  70 atleaalkllkpgGrlvvvGg..gkgeeefdlrnlllkeksilGsllgs 116
                 + +++ + ++k+gGr+ ++++  g+  ++f+++ l+ k ++++G   + 
  CDO73229.1 315 EIVNEMIMATKKGGRCGIIAAyaGYT-NHFNIGALMEKGIRLIGNGQAP 362
                 568889999************74444.44**************976555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.1e-08   4.2e-05      36      95 ..     216     273 ..     209     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.1e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgvelvsleellaesDiv 95 
                   g tvG++GlG IG  v + +k  g+ +vi++dr +++ ++++e+gv   ++ ++ ++sD+v
    CDO73229.1 216 GDTVGVWGLGPIGLCVTQFAKMKGAkRVIGIDRVPERLKKAQEHGV---EVLDFSQHSDVV 273
                   78*******************999988*******998887888776...666677777776 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.6e-08   9.1e-05      21     112 ..     234     335 ..     227     375 .. 0.78
   2 ?   -2.1   0.0       1.5     3e+03      59      76 ..     388     403 ..     383     406 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.6e-08
  Methyltransf_31  21 laeelgpkaevvGiDiseeaielArenaqklgldnveFeq.gdiee.leklledekfDlilsnevl..............naladpdkileeie 98 
                      +a ++   ++v+GiD+ +e +++A+e    +g++ + F+q +d+ + l++ +++   D+ l+ +++              ++ +d  +i +e++
       CDO73229.1 234 FA-KMKGAKRVIGIDRVPERLKKAQE----HGVEVLDFSQhSDVVKrLQE-IAPGGLDVALDCGTFhqpktilhkvekalMLETDVSEIVNEMI 321
                      55.5556677***************9....7*******9999**999998.788*****99995555555555555555599999999999*** PP

  Methyltransf_31  99 rvlkpggilliedp 112
                       + k+gg++ i  +
       CDO73229.1 322 MATKKGGRCGIIAA 335
                      ********977655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
  Methyltransf_31  59 eqgdieeleklledekfD 76 
                      ++ die+++kl++   fD
       CDO73229.1 388 HRVDIEDMPKLYQ--AFD 403
                      5689*****9755..588 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.056       3      45 ..     221     264 ..     219     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                 EES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEE CS
      TrkA_N   3 iiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevv 45 
                 + GlG +G  +++  +  g k+v++id+ +er+++++e+g+ev+
  CDO73229.1 221 VWGLGPIGLCVTQFAKMkGAKRVIGIDRVPERLKKAQEHGVEVL 264
                 789******9999999866689******************9987 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   4.7e-05     0.094      49      67 ..     115     133 ..     106     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
                 -TTT--EEE-TTT-SEEEG CS
     FANCL_C  49 qsfdvlfGeCPyCkkkisv 67 
                  sf++  GeC yCk+k+s+
  CDO73229.1 115 ASFQIACGECEYCKQKLSS 133
                 69**************986 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.9e-05      0.16       8      94 ..     228     330 ..     222     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.9e-05
                      SHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEE.TTEECCC.T.SS-TT-EEEEEEES-CCC-C..............CHHHHHH CS
  Methyltransf_11   8 Grlaealakrg..arvvgvDlskemlklakekaseeglkvef.vvadaek.l.pfednsfDlvvssevlhhve..............dpekalk 82 
                      G+ + ++ak    +rv+g+D  +e lk a+e+++e     +f +++d+ k l  ++ +  D+ +   ++h  +              d++++++
       CDO73229.1 228 GLCVTQFAKMKgaKRVIGIDRVPERLKKAQEHGVEVL---DFsQHSDVVKrLqEIAPGGLDVALDCGTFHQPKtilhkvekalmletDVSEIVN 318
                      5555666643347*****************9999985...443555655447569999999999999888885566677788888889999999 PP

                      HHHHHEEEEEEE CS
  Methyltransf_11  83 eiaRvLkpgGll 94 
                      e+    k+gG++
       CDO73229.1 319 EMIMATKKGGRC 330
                      999999999998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.32       9      76 ..     228     299 ..     222     328 .. 0.68
   2 ?   -4.0   0.0         9   1.8e+04      51      66 ..     388     403 ..     385     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                      SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS.SSTTTEEEEEEESTGG....G CS
  Methyltransf_25   9 GrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp.fedgsfDlvvssgalh....h 76 
                      G  + ++ak  g+++v+g+D  +e l++a+e+  e  l+++ +   +++l+  + g  D+ + +g++h    +
       CDO73229.1 228 GLCVTQFAKMKGAKRVIGIDRVPERLKKAQEHGVE-VLDFSQHSDVVKRLQeIAPGGLDVALDCGTFHqpktI 299
                      6667788888789******************9943.2355555555577763478888988887777744440 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9
                      EESBCCGBSSSTTTEE CS
  Methyltransf_25  51 vqgdaedlpfedgsfD 66 
                      ++ d+ed+p   + fD
       CDO73229.1 388 HRVDIEDMPKLYQAFD 403
                      5678999998888887 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.36       1      13 [.      32      44 ..      32      45 .. 0.97
   2 ?   -3.6   0.5       5.7   1.1e+04      15      19 ..     187     191 ..     187     191 .. 0.89
   3 ?   -2.6   0.1       2.9   5.7e+03      10      18 ..     388     396 ..     387     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
  ADH_N_assoc  1 MKAVTyqGpkdVr 13
                 MKA+ + Gp+dVr
   CDO73229.1 32 MKALAWFGPRDVR 44
                 ************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.7
  ADH_N_assoc  15 eeVPD 19 
                  ++VPD
   CDO73229.1 187 DNVPD 191
                  69**9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.9
  ADH_N_assoc  10 kdVrVeeVP 18 
                  + V  e++P
   CDO73229.1 388 HRVDIEDMP 396
                  78999**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3131.83
//
Query:       CDO73230.1  [L=410]
Description: hypothetical protein BN946_scf185007.g285 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2924.13
//
Query:       CDO73231.1  [L=290]
Description: hypothetical protein BN946_scf185007.g286 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.013   14.8   1.7      0.017   14.4   1.7    1.1  1  Peptidase_U4  Sporulation factor SpoIIGA


Domain annotation for each model (and alignments):
>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.7   9.4e-07     0.017      35     149 ..      30     190 ..      21     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.4e-07
  Peptidase_U4  35 lllaAllGalyvvlvlflpklesillsillkilvsllmv.liafgpkslk........eflkalllfylvsfllgGilfalsyll...lkskn.... 115
                   ++++ l+ a  +++   +p+++++++ i+++i  ++ ++ +ia + + +k        +++   ll+ +++f+++ ++++ls +        +    
    CDO73231.1  30 IIAGTLAIATPSIVGAATPSFAKWIFAIVCYIGAAVQLLgIIAVRQRPWKqerpiffrRYVSLHLLVTVAAFAVAAAWIILSAVRhkqA---Qskci 123
                   6777888888888899999*************9999999899999999999999888899999999999999****9999999445550...24556 PP

  Peptidase_U4 116 .................................llvlllgalvaylllkllvkiikkkkkkekeiye 149
                                                    +++l++  + +y++++ + k  ++ ++k++ +y+
    CDO73231.1 124 ddffagtisasnsegetlcnifpwadvgimgglWVLLAIMQTYLYVVVSSFGKGQRRDHSKYQSLYD 190
                   6666666666678889999999988888888766666677777777777666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2017.10
//
Query:       CDO73232.1  [L=424]
Description: hypothetical protein BN946_scf185007.g287 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-25   88.9   0.0      1e-24   87.9   0.0    1.5  2  RNase_T         Exonuclease
    3.6e-22   79.2   0.4    5.4e-22   78.7   0.4    1.3  1  E1_DerP2_DerF2  ML domain
     0.0014   19.0   0.0     0.0027   18.1   0.0    1.4  1  TRP_N           ML-like domain


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6   9.6e+03      57      79 ..      85     106 ..      49     131 .. 0.59
   2 !   87.9   0.0   1.7e-28     1e-24       1     164 [.     223     407 ..     223     408 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
                 HHHCHHHHHTCEBHHHHHHHHHH CS
     RNase_T  57 tgitqemldeapsfkevleefke 79 
                  g   +++ ++    +vl+++++
  CDO73232.1  85 DGA-YADVTVKVGVIKVLQKEFD 106
                 333.3333333333444444444 PP

  == domain 2  score: 87.9 bits;  conditional E-value: 1.7e-28
                 EEEEEEESSSTT.....CTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETT.TC CS
     RNase_T   1 vviDlEttglda.....kekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahn.aa 93 
                 +v+D+E+t+ d+         eiie++ i  d    +++  fh yv+pt +++lt++ct++tgi q+++  a  f+ v+e+ ke+l   +++  +   a
  CDO73232.1 223 LVLDFEATCDDTnrivpRGEMEIIEFPTILYDLQHDKVEAVFHEYVRPTLHPTLTKFCTDLTGIEQKTVAAANPFPRVWERYKEFLH-SHKIAEDPsSA 320
                 69***************669************99999**************************************************.666666677** PP

                 EEEESSHHHHHHHHHHHHH............HHHHCSEHCECHHHHHHHHHC....HHHHHHHHHTTCHSSSSTSSHHHHHHHHHHH CS
     RNase_T  94 fdvgflraadkrilkkevp............krnqfldtlildkatlkelar....tsldklaeklgleedgraHrAldDaeatakl 164
                  +++++++++k +l ++++               + +d +i++k+++++l++    +++d ++++ g+e  gr+H+++dD++++++l
  CDO73232.1 321 SFLTCGDWDLKTMLPLQLQlagitdafvqtgSLVPPFDRWINVKKSFQRLYSlrypKGMDGMLRHMGMELEGRHHSGIDDCKNILRL 407
                 *******************************99**************************************************9987 PP

>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.4     9e-26   5.4e-22       2     131 ..      40     164 ..      39     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 9e-26
                     -EEEESSTTTSSEEEEEEEEEESSECEECTSEEEEEEEEEECS.SBBSSEEEEEEEEETTEEEEE-BSSEETCHHHHHH.TTTT-SSSB-TCEEE CS
  E1_DerP2_DerF2   2 vsfedCgankddavtvksveisppcplkrgqnltisadgstsd.eissglkaevevkvggwikvpfelpetddaCkvle.lgegleCPikageyv 94 
                     +++ dCg  + ++v++k +++sp+ p++rg++lt++++g ++   + +g++a+v+vkvg +ikv+ +   + d+C++    +  ++CP+k+g+  
      CDO73232.1  40 WDWTDCG-TESHIVHIKDIQVSPD-PPQRGEDLTVTVEGIANAaVEQDGAYADVTVKVG-VIKVLQK---EFDVCEEALkANATIQCPVKEGTH- 127
                     68****7.4888************.**************6554145678999******9.6******...89****64378999**********. PP

                     EEEEEEES-CCCHSCEEEEEEEEEECTTEEEEEEEEE CS
  E1_DerP2_DerF2  95 tytlslplpselpngkyrvelelldedgkeltCvkid 131
                     + + +++lp+e+p+ +++v+++ +++d+++++C+++ 
      CDO73232.1 128 KVVQTVTLPKEIPPAQFKVNIRGYTADDDDMVCLDLM 164
                     77*******************************9876 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.5e-07    0.0027       7     101 ..      43     141 ..      39     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.5e-07
       TRP_N   7 enClens.qftaskfdvtftpdnk..tvvfnvtgt..ssienkavtlelkveaygyevvnetvdpCdan....vkglCPlgpgfkinasgvlkvseevv 96 
                 ++C ++s  + +++++v+ +p+++   +++ v+g+   ++e+    ++++v++  ++v+++++d+C++      + +CP+++g+  ++ ++++ +    
  CDO73232.1  43 TDCGTEShIVHIKDIQVSPDPPQRgeDLTVTVEGIanAAVEQDGAYADVTVKVGVIKVLQKEFDVCEEAlkanATIQCPVKEGT-HKVVQTVTLP---- 136
                 6786665367788888988888878855555555533677888899*********************9977767789******4.4333333334.... PP

       TRP_N  97 seips 101
                 +eip 
  CDO73232.1 137 KEIPP 141
                 35555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2967.76
//
Query:       CDO73233.1  [L=357]
Description: Glycoside Hydrolase Family 5 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-24   84.3   1.5    1.2e-23   84.0   1.5    1.1  1  Cellulase        Cellulase (glycosyl hydrolase family 5)
    7.6e-05   22.2   0.3     0.0025   17.2   0.0    3.0  2  Glyco_hydro_42   Beta-galactosidase
     0.0074   15.4   0.0      0.032   13.4   0.0    1.8  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   1.5   1.9e-27   1.2e-23      27     275 ..       6     300 ..       1     305 [. 0.79

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 1.9e-27
                 HHHHHHHT-SEEEEEEE.............CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..........TTT....CSSSSTTTTH CS
   Cellulase  27 idevkdagfntvRlpvs.............wgelvenapdykvdenslerveevvkyakenglyvildiHse..........egw....ltkadgnsse 98 
                  + ++++gfn++                  w++++   + ++ +++ l+r+++v++ a + g++vi+   ++           +w     +++d   ++
  CDO73233.1   6 VKVLRTWGFNAINATELpsalesglthyqvWNSST---WVLNDGPQGLQRLDNVINTAGKYGIKVIVAFTNNwvgyggsdlyVQWisgaGKPHDIFFTD 101
                 56677888888876555333444333322232222...33377789*************************8777777666644477778899999999 PP

                 HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCT.....CCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHH.................. CS
   Cellulase  99 dtaeeffkklwtqiAerykkndevvifelmNEPhgnntg.....aewtseeadevkayaeeaikaIRavgpnrliivegns.................. 174
                  ++ + ++++++ + eryk+++++ ++elmNE ++ +++     +  +   ++++k ++ e  + +R+ +p++li  +g++                  
  CDO73233.1 102 PEIIASYQAYVKTLVERYKDSPNIFAWELMNEARCLSDTlpagpT--CVPGSNTLKTWYREQSDFVRSLDPDHLITTGGEGhfywrkpaeywfnhslvs 198
                 99*********************************9888764432..56889***************************99***999999999999888 PP

                 .HHTBHHHHHCT......SGSSSSTTEEEEEEEETTTHHHTGCGS.HSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHH CS
   Cellulase 175 .wsgnldgavln......dPndsqdnliysvHfYgpsdfaqtefg.kdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldyl 265
                  ++ n ++ + +       Pn      + + H Y++s + +  f  +++t +++  +++++++k +++ ++pvi++EfG+s  ++  +++   +w++ +
  CDO73233.1 199 dYNYNGQA-GEDfdhdmlLPN----IDFGTYHLYPQSWYPELDFPgSNWTVENWGLKWIDEHIKAANKADKPVILEEFGVSGLQN--KSTIYPTWVQRA 290
                 85555555.444445666674....4799******9988888887899********************************98888..777778887766 PP

                 HHTTTEEEEE CS
   Cellulase 266 kekgiswiyW 275
                  + +   + W
  CDO73233.1 291 LDTRHAIMPW 300
                 6555555555 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.2e-07    0.0025      49     140 ..      53     136 ..      40     144 .. 0.80
   2 ?    1.4   0.1     0.028   1.6e+02     210     261 ..     153     203 ..     150     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.2e-07
                     HHHHHHHHHCTT-EEEEE-STTS--HHHHHH-GGGS-B-TTS-B--SSSS----TT-HHHHHHHHHHHHHHHHHHTT-TTEEEEE-SSSTTT CS
  Glyco_hydro_42  49 LdevldllekagikviLatptaapPaWlvkkyPeilavdadgskrkfgsrqhiclsspvyrekvakivealaerYkdhpavilwhidnEygc 140
                     Ld+v+++++k gikvi+a  +    +W+     +           + g+ + i ++ p      ++ v+ l erYkd p + +w++ nE  c
      CDO73233.1  53 LDNVINTAGKYGIKVIVAFTN----NWVGYGGSDLYVQ----WISGAGKPHDIFFTDPEIIASYQAYVKTLVERYKDSPNIFAWELMNEARC 136
                     777777777777777777666....4666666666553....345679999**************************************777 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.028
                     HHHHHHHHHHHHHHHHSTT-EEE-EE-TT...--SS-HHHHGGGSSSEEEEE-H CS
  Glyco_hydro_42 210 qilefvkaeaeilreyspdipvttnfmgs..afkdldyvklakeldivswdsYp 261
                     +++++++++ + +r++ pd  +tt   g+  ++k  +y+    +  +vs  +Y 
      CDO73233.1 153 TLKTWYREQSDFVRSLDPDHLITTGGEGHfyWRKPAEYWF---NHSLVSDYNYN 203
                     6677888888888888888888877666655666666654...33344444444 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   5.3e-06     0.032      69     212 ..      61     273 ..      54     289 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.3e-06
                      HHHT-EEEE..E-S-B-TT....SCCCCSHCT-CCCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS..................CH CS
  Glyco_hydro_2_C  69 DeyGlyvid..Eanlethg....laqklgeiepsynvladnpewlkavldrieelverdkNHpsviiWSlgNEs..................ga 138
                       +yG+ vi    +n +++g     +q +  +++ +++   +pe  + +   ++ lver k  p +  W l NE+                  + 
       CDO73233.1  61 GKYGIKVIVafTNNWVGYGgsdlYVQWISGAGKPHDIFFTDPEIIASYQAYVKTLVERYKDSPNIFAWELMNEArclsdtlpagptcvpgsnTL 154
                      56666555412345566652111223333445567788899*********************************99999999999998777666 PP

                      HHHHHHHHHHHHHH-TTSEEEEETC...............................SSGGGTSSEEEECCTTTSSSTTCHHHHHHHHHHCH... CS
  Glyco_hydro_2_C 139 gedikalaelikklDptRlvhyegv...............................aaareldviildiysrmyekvglleelekelenek... 198
                       + +++ ++++++lDp  l++  g+                               +     d +  +i +  y+ ++            +   
       CDO73233.1 155 KTWYREQSDFVRSLDPDHLITTGGEghfywrkpaeywfnhslvsdynyngqagedfD----HDMLLPNIDFGTYHLYP------------Qswy 232
                      667778889999999999999988866765555555555555555555444432221....22222222222222211............0222 PP

                      ...........................HHHSS-EEEEEESE CS
  Glyco_hydro_2_C 199 ...........................kklqkPlilcEYgh 212
                                                 +k +kP+il E+g+
       CDO73233.1 233 peldfpgsnwtvenwglkwidehikaaNKADKPVILEEFGV 273
                      22222222233333333333444444477777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2458.91
//
Query:       CDO73234.1  [L=690]
Description: hypothetical protein BN946_scf185007.g289 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-08   34.0   0.0    1.6e-07   31.9   0.0    2.1  2  Ipi1_N    Rix1 complex component involved in 60S ribosome mat


Domain annotation for each model (and alignments):
>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   8.7e-12   1.6e-07      28     102 .]      86     167 ..      72     167 .. 0.87
   2 ?   -2.1   0.0      0.33   5.9e+03      23      43 ..     498     518 ..     475     534 .. 0.57

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8.7e-12
      Ipi1_N  28 dslkfLdllLevapeelvssawv.........ktLnnflallgwskeksskgstsakatsssssskktskksrlkvLsvlakfL 102
                  +++fLd++Le++pe  v + w          ++L+++l++l++ ++ ++ g+t   ++++s++s  +s++s+l vL++la+fL
  CDO73234.1  86 HAVRFLDIFLEHIPEI-VVEGWTqhassshgrRVLEGYLGILNAGTSFGEGGDTG-PVQATSTASVVLSSASKLVVLRSLANFL 167
                 699***********99.777788888******************76555555554.4899***********************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.33
      Ipi1_N  23 pdIredslkfLdllLevapee 43 
                 +d+ + s+ ++++++e+a ++
  CDO73234.1 498 ADVADASTTLFSAFIEHALKA 518
                 344555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4673.42
//
Query:       CDO73235.1  [L=569]
Description: hypothetical protein BN946_scf185007.g290 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4139.65
//
Query:       CDO73236.1  [L=106]
Description: hypothetical protein BN946_scf185007.g291 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-08   32.2   0.0    1.2e-07   31.9   0.0    1.3  1  DPBB_1    Lytic transglycolase


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   6.9e-12   1.2e-07      34      78 ..      51      96 ..      23     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 6.9e-12
                T-EEEETT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS- CS
      DPBB_1 34 gtycrvls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGv 78
                g +++  + gksvtV +tDr+  ++ + +D S+ Af++la+ + G 
  CDO73236.1 51 GRKITATYqGKSVTVAVTDRCTGCALTDLDFSPSAFSELADFDVGR 96
                4446666669******************************987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 755.92
//
Query:       CDO73237.1  [L=378]
Description: hypothetical protein BN946_scf185007.g292 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-13   48.5   0.0    1.3e-12   47.7   0.0    1.3  1  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.16   12.0   0.0    1.4  1  UPF0172   Uncharacterised protein family (UPF0172)


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.5e-16   1.3e-12       4     113 ..      48     153 ..      46     156 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.5e-16
                 CEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-SS-- CS
         JAB   4 qavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpditvwls 102
                 ++v+l++ v+ ki++ha++   +     Gll+G+  d  t+e+ n+f lp++ +++d++ v+ +  y  ++ ++lk+++++  v+G+Y+      ++++
  CDO73237.1  48 TSVQLDAMVVSKIIKHAKEAPGS--SAHGLLLGLDLDG-TFEVSNSFPLPHHSNDEDDKSVKSVARYQGSMLRSLKEVQADDSVIGFYQGMALG-SFFN 142
                 689*****************999..9********9999.**************************************************76655.**** PP

                 HHHHHHHHHHH CS
         JAB 103 evdvrtqalyq 113
                 +  v+tqa  q
  CDO73237.1 143 QTLVDTQAIHQ 153
                 *******9877 PP

>> UPF0172  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.16       5      53 ..      53      99 ..      49     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
     UPF0172  5 ssqAYvKlllHaaKyptqaVnGvLlgkkssskskvevtDavPLfHsslt 53
                ++    K++ Ha   p ++  G+Llg   + +  +ev++  PL H+s +
  CDO73237.1 53 DAMVVSKIIKHAKEAPGSSAHGLLLGLDLDGT--FEVSNSFPLPHHSND 99
                555668*********************99999..9**********8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2568.52
//
Query:       CDO73238.1  [L=553]
Description: hypothetical protein BN946_scf185007.g293 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-44  152.6   0.0      2e-44  152.2   0.0    1.1  1  Plavaka   Plavaka transposase


Domain annotation for each model (and alignments):
>> Plavaka  Plavaka transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   1.1e-48     2e-44      37     321 ..     239     532 ..     219     533 .. 0.87

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 1.1e-48
     Plavaka  37 pkwmkeeyelwfrdplevikellgnpdfadeldyaPereytde..kkg.ervysemmtgdwaweqqieekptegatlvpvilssDKTtlsvftgnkeay 132
                  k  ++ey l+ rd+++ +k++l+np + +++++ ++r ++ +  +++  + ++e  t++ aw++q + k +     +  il  DKT+ls f g  + y
  CDO73238.1 239 YKKDDREYPLYKRDIWDYMKDILRNPYLVSRMEWDAHRLLRYNsqTEQwVQFIDEPLTASTAWDVQ-S-KLPFPMKPLLFILYADKTKLSSF-GTAKGY 334
                 3457899*******************************8874432333589***************.3.333456667789***********.****** PP

     Plavaka 133 PvYlsiGnipkevrrkasrnavvllayLpipklkkikkskefrklfkrqlfHaclarilepLkeagkkgvvmtcadghvrrvipilaayiaDypEqvlv 231
                 Pv l  Gn+p ++r+     +  ++++Lp+   +  +k+k+    fkr ++H+++++il+p+++  ++gv  +c+d + r++ p +++   Dy+Eq+ +
  CDO73238.1 335 PVILRCGNLPVDIRNGEGPGGGRVVGWLPVLDEEAGEKHKTGYVNFKRVVWHESFRIILDPIRAFTHSGVWFRCGDDVERCMCPFVVILSSDYEEQCCM 433
                 ******************************887655556665556****************************************************** PP

     Plavaka 232 acivqg....wCpkctakkkelgdl.eeselrtreetlelleeaade.....lkklwkeyglkgviepFwedlpradihelltpDlLHqlikgvfkdHl 320
                 + i+       Cp c+++k +l ++   +++rt +e++++l+ea         ++ +++  l++v++ F e l ++d++++l+ D LH ++ g+f +H 
  CDO73238.1 434 SLIRGAnglfPCPVCMIPKGQLSNYaVVFPKRTGQEAQRILQEALALknqsaREAILQQWSLRPVQNAFLE-LAHSDPYQALSFDRLHAFHSGLFGHHF 531
                 **965533567*************87889************9997333456667799************95.99**********************998 PP

     Plavaka 321 v 321
                 +
  CDO73238.1 532 W 532
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3805.69
//
Query:       CDO73239.1  [L=166]
Description: hypothetical protein BN946_scf185007.g294 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1262.21
//
Query:       CDO73240.1  [L=261]
Description: hypothetical protein BN946_scf185008.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.053   13.2   0.1       0.09   12.4   0.1    1.3  1  NPH3             NPH3 family
      0.078   13.0   1.4       0.42   10.6   0.1    2.1  2  tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA
      0.079   12.3   2.1       0.19   11.1   2.1    1.7  1  T2SSK            Type II secretion system (T2SS), protein K
      0.093   12.6   0.1      0.093   12.6   0.1    1.7  3  Sec34            Sec34-like family
       0.12   12.4   1.0       0.17   11.9   1.0    1.3  1  Band_7           SPFH domain / Band 7 family


Domain annotation for each model (and alignments):
>> NPH3  NPH3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.5e-05      0.09     213     243 ..     108     138 ..      90     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
        NPH3 213 esarkvdDgLYrAiDiYLkaHpelseserkr 243
                 +  r+++D L +A+  Y++ Hpe +e+er r
  CDO73240.1 108 AIKRPTKDILKKAVQKYFEDHPEHQEEERYR 138
                 5689*************************76 PP

>> tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.092   3.3e+02     109     140 ..      36      67 ..       8      75 .. 0.83
   2 ?   10.6   0.1   0.00012      0.42     116     142 ..     113     139 ..      71     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.092
  tRNA_synt_1c_R1 109 cGVGvevtpeqieeaVekyieenkeeieekry 140
                      +G G e  ++q  e+V++ ie+++++i  +r 
       CDO73240.1  36 SGAGLEAWKAQEAERVTQEIEKEAKRIARERK 67 
                      68888888888889999999999998888875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
  tRNA_synt_1c_R1 116 tpeqieeaVekyieenkeeieekryrk 142
                      t++ +++aV+ky+e++ e  ee+ryr 
       CDO73240.1 113 TKDILKKAVQKYFEDHPEHQEEERYRG 139
                      88999********************64 PP

>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   5.4e-05      0.19      67     145 ..       4      80 ..       2     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.4e-05
       T2SSK  67 grieDlqgrfNLnnLvssaaekdpaalqvfqrLlealgld...aaeaerladaladwldadsessssggaedsayasleppy 145
                  +ie+lq ++NL+n   +  +k+ + ++  + L++  gl+   a+eaer+++++ +     +++++++ ae++a ++ + +y
  CDO73240.1   4 LEIEELQQKLNLRNAQ-KV-NKSRTLVTDARCLMSGAGLEawkAQEAERVTQEIEKEA---KRIARERKAEEQAALRCDLAY 80 
                 68************93.33.368999999***********666677777776666544...455677788887777766666 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.9   6.8e+03      74      91 ..       6      23 ..       5      29 .. 0.69
   2 ?   -3.6   0.1       2.6   9.4e+03      37      53 ..      49      65 ..      43      73 .. 0.53
   3 ?   12.6   0.1   2.6e-05     0.093     106     131 ..     123     148 ..     115     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.9
       Sec34 74 ldpitrkLnspgsslvks 91
                ++++++kLn  +++ v++
  CDO73240.1  6 IEELQQKLNLRNAQKVNK 23
                677888888777775554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
       Sec34 37 sektsslheaceqllee 53
                +  t++++++++++ +e
  CDO73240.1 49 ERVTQEIEKEAKRIARE 65
                44445555555555544 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 2.6e-05
       Sec34 106 efleehpefkeaetYlirfkqcltrA 131
                 +++e hpe++e e Y+  f+q ++rA
  CDO73240.1 123 KYFEDHPEHQEEERYRGLFRQAQKRA 148
                 69***********************9 PP

>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0   4.6e-05      0.17      78     148 ..      27     113 ..       8     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
      Band_7  78 lvaav.........eresanldnlirrvlesalrevisemtleellsn........reelaeelknelneqlrkyGvevldvritdid 148
                 lv++          e + a+ ++ +++ +e+++++++ e+++ee  +          ++l ++l  +l++ ++++G+++ ++ i++++
  CDO73240.1  27 LVTDArclmsgaglEAWKAQEAERVTQEIEKEAKRIARERKAEEQAALrcdlaytySGGLSKQLLPDLQALVQELGITLDSA-IKRPT 113
                 34333566777788999********************99999888755566667779********************99766.66664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      813  (0.0453455); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1804.80
//
Query:       CDO73241.1  [L=672]
Description: hypothetical protein BN946_scf185008.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-16   58.6   0.2    9.4e-16   57.6   0.2    1.4  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
          3    8.0  10.3        1.3    9.2   5.0    2.6  2  SUIM_assoc    Unstructured region C-term to UIM in Ataxin3


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.2     1e-19   9.4e-16      31     188 ..     226     369 ..     190     378 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1e-19
  Fungal_trans  31 ksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarsl 127
                   +   ++ ++l ++l lGal+  +  + s      e ++ +++  ra+     d   +s+s+ ++q+L l++ y + s      + ++g+av+la+sl
    CDO73241.1 226 PMHAHQLAVLCLVLGLGALLDLEKPSLS-----AE-AMRYYQLGRAALSM--DSILESQSVPAIQALILMCHYMFLSFVDGPRWALMGLAVKLAQSL 314
                   3333333444555556666555555444.....23.35666666777777..99999*********************99999************** PP

  Fungal_trans 128 gLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcd 188
                   gLhr++ +++      l+++e  +rr l++  +  D + +l +Grpp +    i++ +P++
    CDO73241.1 315 GLHRDSGRWN------LDAKETFRRRSLFYELYTYDSWQSLTYGRPPSFASAFIDCKMPEE 369
                   **********......*******************************99**********86 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2     0.079   7.1e+02      14      42 ..      71      98 ..      60     107 .. 0.69
   2 ?    9.2   5.0   0.00014       1.3      31      45 ..     621     635 ..     585     648 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.079
  SUIM_assoc 14 ltsEeLrkrreaYFEKqeqqqqqqqqqqd 42
                l sEeLr  +    E++  +   q+q+q+
  CDO73241.1 71 LLSEELRALKRP-LERESPEEMAQEQEQE 98
                779999987776.6775555555555554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00014
  SUIM_assoc  31 eqqqqqqqqqqdppg 45 
                 +qqqqqqqqqq+ p 
  CDO73241.1 621 QQQQQQQQQQQHHPA 635
                 455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 4630.60
//
Query:       CDO73242.1  [L=261]
Description: hypothetical protein BN946_scf185008.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   51.6   0.0    1.5e-13   51.6   0.0    2.4  2  AATF-Che1   Apoptosis antagonizing transcription factor
    0.00066   20.1   0.5     0.0027   18.2   0.0    2.3  2  TRAUB       Apoptosis-antagonizing transcription factor, C-te
     0.0048   15.2   8.8     0.0055   15.0   8.8    1.1  1  Nop14       Nop14-like family
  ------ inclusion threshold ------
       0.12   11.8  16.2       0.15   11.5  16.2    1.1  1  SDA1        SDA1
       0.93    8.5  11.0        1.2    8.2  11.0    1.1  1  LAP1C       Lamina-associated polypeptide 1C (LAP1C)
        1.4    8.0   8.8        1.7    7.6   8.8    1.2  1  Roughex     Drosophila roughex protein
        1.9    7.6   8.5        2.4    7.3   8.5    1.2  1  Zip         ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   3.6         3   7.6e+03     113     113 ..     128     128 ..      58     178 .. 0.56
   2 !   51.6   0.0   5.9e-17   1.5e-13       1      37 [.     197     233 ..     197     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3
   AATF-Che1 113 e 113
                 +
  CDO73242.1 128 S 128
                 1 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 5.9e-17
   AATF-Che1   1 DaeKGkaVknQlklwDslLelRIklQkaltaanqLpq 37 
                 D +KGkaV++Q++lwD+lL++RI+l+ka+taan+Lp 
  CDO73242.1 197 DKKKGKAVSRQIALWDTLLDARIQLHKAVTAANRLPL 233
                 789*********************************4 PP

>> TRAUB  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4       1.6     4e+03      30      30 ..     184     184 ..     133     208 .. 0.57
   2 !   18.2   0.0   1.1e-06    0.0027      62      85 .]     234     259 ..     230     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.6
       TRAUB  30 q 30 
                 +
  CDO73242.1 184 T 184
                 2 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.1e-06
       TRAUB  62 NFmapeer..gkweeeqidelfasLl 85 
                 NFm+p++   g+w+eeqid lf+sLl
  CDO73242.1 234 NFMVPVPVlvGEWHEEQIDGLFSSLL 259
                 9******667***************8 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   8.8   2.2e-06    0.0055     346     423 ..      83     162 ..      45     241 .. 0.40

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-06
       Nop14 346 eeeeededdfeedddlveseseeee.eeeeedeeeeedeeeee..eeeededdlsdleseeeeeedeleeel..leeekkaae 423
                 ++ ++ +d  ++d+ +v++++e+++  +  + +e+ +de+e+e   +  d+ d++d++++ + +e e  +e+    +++ +++
  CDO73242.1  83 HLYDDRSDHATDDE-DVADNEEQQDgRSVPSHSESGTDEDEDEelHSPADDTDSQDEDESGSGSEHE--HEHspSRQDQVNEA 162
                 22333333322222.3333322222222222222222222222011112222222222111111111..11111111111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  16.2   5.8e-05      0.15      94     198 ..      87     203 ..      60     219 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
        SDA1  94 dsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkk............ 180
                 d  ++   +d++v++   +ee+++g   +v s +e  +  de+edee  +  ++++ ++e+e+ +   +e+e+e + +++++ ++++            
  CDO73242.1  87 D-RSDHATDDEDVAD---NEEQQDG--RSVPSHSE--SGTDEDEDEELHSPADDTDSQDEDESGSG--SEHEHEHSPSRQDQVNEAStslsqidinsgr 175
                 1.1122223333333...2233333..47888777..45566677777777777777766666666..4444444444444433333567888888888 PP

        SDA1 181 .............kakeaseeekkkekeeek 198
                              +     +++++++k+ ++
  CDO73242.1 176 apaslrpvtditsN---LRKTHEADKKKGKA 203
                 88888887775441...22233333333333 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  11.0   0.00045       1.2      27     163 ..      76     205 ..      59     229 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00045
                 XXXXXXXXXXXX................XXXXXXXXXXXXXX..XXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       LAP1C  27 qtrkplsslkkdhqevetigsesadtedkseseqevnlseepkdetEeedsessqsgeeghklsseslgeekldsedsvsssdktgradaqleessaal 125
                  +r++ ++l +d+++  t +++ ad+e++   ++  + se+++de E+e+ +s  + +++ + + es + ++ ++e+s s +d++++a+++l++  +++
  CDO73242.1  76 GIRTSRKHLYDDRSDHATDDEDVADNEEQQDGRSVPSHSESGTDEDEDEELHSPAD-DTDSQDEDESGSGSEHEHEHSPSRQDQVNEASTSLSQIDINS 173
                 566777778888888999999999999999999999999***99999999999888.666677777777778888888888888888777665543333 PP

                 XXXX.XXXXXXXXXXX......XXXXXXXXXXXXXXXX CS
       LAP1C 126 seeasdrtaasqepsaadsqeaqssghskaeqeeqdtl 163
                  +       as + +++d ++ ++++h++ +++++++ 
  CDO73242.1 174 GR-----APASLR-PVTDITSNLRKTHEADKKKGKAVS 205
                 22.....222223.333555555555555555544444 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.8   0.00068       1.7     239     307 ..      78     145 ..      51     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00068
     Roughex 239 lsvrrilfadgadedgdedtdgsveekkddasepdlpdqnkeedkdeqeqqaeqeeqaqqqaeeapvss 307
                 ++ r+ l+ d +d+  d++  +  ee++d  s p   +   +ed+de+  +++ ++ + q+ +e+   s
  CDO73242.1  78 RTSRKHLYDDRSDHATDDEDVADNEEQQDGRSVPSHSESGTDEDEDEE-LHSPADDTDSQDEDESGSGS 145
                 67899********99888777999********************9974.45566666666666653322 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.5   0.00095       2.4     103     172 ..      89     167 ..      63     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00095
         Zip 103 ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas.........e 172
                 ++++ +++    +++++  +++ s+s++ ++e+e+ e h + +dtd + + e   g+++ +e+++++++         +
  CDO73242.1  89 SDHATDDEDVADNEEQQDGRSVPSHSESGTDEDEDEELHSPADDTDSQDEDESGSGSEHEHEHSPSRQDqvneastslS 167
                 4555566666666667777778888888888888887777777777776666666666666666666444443333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 1622.22
//
Query:       CDO73243.1  [L=1268]
Description: hypothetical protein BN946_scf185008.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-36  123.7   0.0    1.2e-34  119.3   0.0    2.7  1  Ras       Ras family
    9.5e-12   45.2   0.0    1.9e-11   44.2   0.0    1.5  1  Roc       Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   1.3e-38   1.2e-34       1     159 [.    1025    1246 ..    1025    1249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 1.3e-38
                  EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEET........TSGGGHHHHHHHHTTESEEEEEEETTBHHHHHT CS
         Ras    1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTA........Gqeefkslrelyyrdaegillvyditsresfen 89  
                  K+v+ Gd+a+GKtsll+ f+++ F++ ye+T+ +++y+++i vd++ v+l++wDTA        Gqeef++lr+l+y ++++i+l++++++ +s+en
  CDO73243.1 1025 KVVVCGDGACGKTSLLNVFTRGWFSTVYEPTV-FENYVHDIYVDDQLVELSLWDTAahvsssdvGQEEFDRLRSLSYAETHVIMLCFSVDNPTSLEN 1120
                  89******************************.**********************999999999********************************* PP

                  HH.HHHHHHHHHST.......................TTSEEEEEEETTTGGG............G-SS-HHHHHHHH................... CS
         Ras   90 vk.kwveeikrvae.......................envpivLvGnKvDlee............kravsteegeela................... 131 
                  v+ kw+ ei ++++                          ++vLv+ K+Dl+e             ++v++eeg ++a                   
  CDO73243.1 1121 VEgKWMPEILEYCPgvkvshnprtsaisesdrltrslLPRQLVLVALKCDLREdketqvrlarygMHTVQYEEGLTVArrirasrylryvplhppps 1217
                  ******************************999887745689***********************55666666666665555555555556666665 PP

                  .HHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  132 .kelglkfletSAktnenveeafeellre 159 
                     ++   +++SAk+n +v+e+f+e++r 
  CDO73243.1 1218 aAAVQRVAVQCSAKHNRGVNEVFYEAARV 1246
                  566777779****************9985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   2.1e-15   1.9e-11       1     107 [.    1025    1134 ..    1025    1139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 2.1e-15
                  EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-........SGGCTTTT-HHHHCTSCEEEEEEE. CS
         Roc    1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDta........Gqerfrslhplylreaalailvyd. 88  
                  Kvv++Gd++ GKtsll+ f+++ fs+ +++t+  ++++  +     v  d+  + v+l++WDta        Gqe+f+ l++l + e ++++l++  
  CDO73243.1 1025 KVVVCGDGACGKTSLLNVFTRGWFSTVYEPTVFENYVHDIY-----V--DD--QLVELSLWDTAahvsssdvGQEEFDRLRSLSYAETHVIMLCFSv 1112
                  9*******************************999976543.....2..33..3589******9888888889********************9974 PP

                  ..GHHHHCHH.HHHHHHHHHCS CS
         Roc   89 ..srssenlk.eWlkelkkvag 107 
                     +s en++ +W+ e+ ++++
  CDO73243.1 1113 dnPTSLENVEgKWMPEILEYCP 1134
                  334455787548****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.49
# Mc/sec: 7792.96
//
Query:       CDO73244.1  [L=1686]
Description: hypothetical protein BN946_scf185008.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-204  670.0  35.5    2.1e-33  115.2   0.2    7.8  8  Clathrin         Region in Clathrin and VPS
    4.7e-37  124.5   0.3    7.2e-07   29.2   0.1    6.8  6  Clathrin_propel  Clathrin propeller repeat
    9.1e-31  105.6   1.0    3.1e-30  103.9   0.1    2.6  3  Clathrin_H_link  Clathrin-H-link
    4.8e-12   45.0   0.3    1.7e-11   43.2   0.1    2.2  2  Clathrin-link    Clathrin, heavy-chain linker
    3.9e-05   22.9   5.2       0.55    9.2   0.0    4.8  5  Coatomer_WDAD    Coatomer WD associated region
     0.0079   16.9  17.0       0.99   10.4   0.1    8.9 11  TPR_14           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.053   13.0   0.1       0.31   10.5   0.0    2.3  2  Acetyltransf_15  Putative acetyl-transferase
       0.27   11.4   5.9         21    5.4   0.0    5.2  5  TPR_7            Tetratricopeptide repeat
       0.48   10.3   8.0         48    4.0   0.0    5.6  5  TPR_1            Tetratricopeptide repeat
        1.8    8.9   8.8         69    3.9   0.1    6.1  6  TPR_2            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1     2e+03      43      66 ..     488     511 ..     446     539 .. 0.65
   2 !   81.9   0.1   2.3e-26     4e-23       4     142 ..     546     684 ..     544     685 .. 0.94
   3 !   71.9   0.0   2.7e-23   4.8e-20       3     142 ..     694     832 ..     692     833 .. 0.92
   4 !  101.8   0.0   1.6e-32   2.9e-29       9     133 ..     847     967 ..     840     976 .. 0.96
   5 !  115.2   0.2   1.2e-36   2.1e-33       1     140 [.     985    1126 ..     985    1129 .. 0.97
   6 !  109.6   0.3   6.4e-35   1.1e-31       2     142 ..    1135    1273 ..    1134    1274 .. 0.96
   7 !  112.0   1.1   1.2e-35   2.1e-32       1     141 [.    1280    1423 ..    1280    1425 .. 0.95
   8 !   95.0   5.7     2e-30   3.5e-27       5     143 .]    1433    1571 ..    1429    1571 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHTT-HHHHHHTTS CS
    Clathrin  43 alqtallelyakyddpqeleeflk 66 
                 +++++++ + a+ +++++++ + k
  CDO73244.1 488 NVHNKVIACFAELGQIDKILLYAK 511
                 445555555555554444444433 PP

  == domain 2  score: 81.9 bits;  conditional E-value: 2.3e-26
                 CCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHS CS
    Clathrin   4 ltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflk..knnnydlekvaklcekadlyeeavilykkinefk 100
                 + + +d++rvv++f+++++++ ++++L ++lk +++e+ +lqt+lle+++ + + q+++++l    ++++d++++a+lceka+l ++a++ly+++ ++k
  CDO73244.1 546 AGPLVDIERVVDIFMSQNMIQPATSFLLEALKDNKPEQAHLQTRLLEMNLLHAP-QVADAILVnqILTHFDRPRIANLCEKAGLLQRALELYDDLADIK 643
                 56789************************************************6.*******9889********************************* PP

                 SHSSXSSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 101 kaisllkklkdfddai..eyaakvsnpelwekllealldkkpfe 142
                 ++i    +  +f+ ++  +y+ ++  ++  +++ e+l  + +++
  CDO73244.1 644 RVI---VHTTAFPTDWlvDYFSRLTTEQSFACMQEMLRVNIRQN 684
                 *44...45589999999******************999988887 PP

  == domain 3  score: 71.9 bits;  conditional E-value: 2.7e-23
                 CCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHT..TXTH CS
    Clathrin   3 eltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykk..inef 99 
                 +++d +   +++++fe+ +++e l++yL ++++  s ++p+++ ++++++ +++++ e+e++++++n+y++ekv +++++a+l ++++++  +  ++++
  CDO73244.1 694 KYSDILGPVKLIEMFESSKSYEGLYYYLGSIVN-LS-QDPEVHFKYIQAATRTGQIREVERICRESNYYNPEKVKNFLKEAKLADQLPLIIVCdrFDFV 790
                 5667777889**********************4.44.55**************************************************888888**** PP

                 SSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 100 kkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142
                 ++++  + +   + + ie+++++ n++  +++++ lld +++e
  CDO73244.1 791 HDLVL-YLYQRGLLNFIEVYVTRVNSRRTPQVIGGLLDVDCDE 832
                 **886.889899999***********************99986 PP

  == domain 4  score: 101.8 bits;  conditional E-value: 1.6e-32
                 -CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSS CS
    Clathrin   9 dlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisllk 107
                 +++++v+++e++++l+++l++Le++++e+s++ pa+++al+++y++++   ++e+flk+nn y +  v+k+ce +d+y +a+i y k  +++++i +++
  CDO73244.1 847 PIDELVQEVESRNRLKLILPWLEARVQEGSQD-PAVYNALAKIYIDSNS--NPEQFLKENNLYEPLVVGKFCEARDPY-LAYIAYAKGFCDEELIHITN 941
                 799**************************998.***************6..***************************.******************** PP

                 SSHCSCHHHHTTTTTXXSHHHHHHHH CS
    Clathrin 108 klkdfddaieyaakvsnpelweklle 133
                 ++ +f+++++y++++++p+lw+++l+
  CDO73244.1 942 ENAMFKQQARYLVRRRQPDLWAQVLG 967
                 ************************96 PP

  == domain 5  score: 115.2 bits;  conditional E-value: 1.2e-36
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS..--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHT CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedsk..enpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykk 95  
                  l+e+tdp+d+s +vk+f +a+l+ el+e Lek+++e ++  +n++lq++l+ ++++ d+  ++  +++k++nyd+e++ k++ +++lyeea+++ykk
  CDO73244.1  985 LPESTDPDDVSVTVKAFLTADLPLELIEILEKIILEPTPfsDNRSLQNLLMLTAIRADK-GKVVGYIDKLQNYDIEEIPKIAIEHGLYEEAFLIYKK 1080
                  789*******************************999889******************9.************************************* PP

                  TXTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXS CS
    Clathrin   96 inefkkaisl.lkklkdfddaieyaakvsnpelwekllealldkkp 140 
                  ++++++ai++ +++  ++++ +eya+kv++pe+w++l++a+ld  +
  CDO73244.1 1081 YEQHAQAINVlVEHIVSLERGVEYAVKVNKPEVWSRLAKAQLDGLR 1126
                  *********88*******************************9765 PP

  == domain 6  score: 109.6 bits;  conditional E-value: 6.4e-35
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkine 98  
                  i++ dp+++++v+++ ++ag+++ l  yL++++k+    +p+++t+l+++yak+d++ ++e+fl ++n  d+ +v+++c + +ly+ a+il++ i++
  CDO73244.1 1135 IKADDPSNYEEVIEITSRAGKYDDLVRYLQMARKTL--REPKIDTELAYAYAKTDRLHDMEDFLAMTNVADVLEVGEKCFEDELYQAAKILFTSISN 1229
                  6889*****************************755..55********************************************************* PP

                  HSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   99 fkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  +++++++l +l++ + a+e a+k+ n+++w+++  a+++k++f+
  CDO73244.1 1230 WARLATTLIYLGENQAAVESARKAGNTQVWKQVHAACVEKGEFR 1273
                  ****************************************9986 PP

  == domain 7  score: 112.0 bits;  conditional E-value: 1.2e-35
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnn.ydlekvaklcekadlyeeavilykki 96  
                  l+ + ++++l+++v+++e++gl++e++++Le++l   +++++ ++t+l++ly ky++ ++l+e+lk +   ++++kv+k +e a+l+ e+v+ly k+
  CDO73244.1 1280 LNIIVHAEELPALVQMYERRGLFDEIISLLEAGL-SLERAHMGIFTELAILYSKYKP-EKLMEHLKLFVGrINIPKVIKAAERAHLWPELVFLYIKY 1374
                  67889*****************************.6889*****************6.********77777************************** PP

                  XTHSSHSS.X.SSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSH CS
    Clathrin   97 nefkkais.l.lkklkdfddai..eyaakvsnpelwekllealldkkpf 141 
                  +ef++a+  +  +  ++++++   +++++v n e+++k+l ++l+++p 
  CDO73244.1 1375 DEFDNAALaMiERSADAWEHNQfkDVIVRVANVEIYYKALTFYLQEQPM 1423
                  ********987**********************************9886 PP

  == domain 8  score: 95.0 bits;  conditional E-value: 2e-30
                  CTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHH...HHHTTXT CS
    Clathrin    5 tdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavi...lykkine 98  
                   ++id+ rvv++f++ ++++++ +yL +v+   + +  a+++a++ l+++++d++ l++++++++n++  k+a+ +ek++l e++++   +ykk+++
  CDO73244.1 1433 IPRIDHARVVRIFQQIEHIPLIRSYLIAVQ---HLNIEAVNEAYNALLIEEEDYKTLRDSIDSFDNFNNMKLARELEKHELLEFRRLaahIYKKNKK 1526
                  689***************************...7799************************************************************ PP

                  HSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHHH CS
    Clathrin   99 fkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfel 143 
                  ++++i l+k++k+++dai +aa++++ e++e+ll++++d++++e+
  CDO73244.1 1527 WEESIALSKQDKLYKDAIITAATSESVEIAEDLLSYFVDIGNKEC 1571
                  *****************************************9986 PP

>> Clathrin_propel  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06    0.0024       2      36 ..      20      55 ..      19      56 .. 0.93
   2 !    9.5   0.0    0.0007       1.3       4      37 .]      63      94 ..      60      94 .. 0.87
   3 !   24.1   0.0   1.6e-08   2.9e-05       3      35 ..     151     191 ..     149     193 .. 0.92
   4 !   10.0   0.0    0.0005      0.89       2      37 .]     205     240 ..     204     240 .. 0.94
   5 !   24.9   0.0   9.2e-09   1.6e-05       6      37 .]     262     293 ..     258     293 .. 0.95
   6 !   29.2   0.1     4e-10   7.2e-07       1      37 []     301     335 ..     301     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                     TTCEEEECCCEEEEECCEEEEEE.CETEEEEEEEET CS
  Clathrin_propel  2 ansqiinfptatneswlfiiain.gtkkGqvqlysv 36
                     + ++ i f t t es++fi++++    ++qv+++++
       CDO73244.1 20 IQPASISFQTLTLESDHFICVREkVNETNQVVIVDL 55
                     67899*******************88********98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0007
                     CEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel  4 sqiinfptatneswlfiiaingtkkGqvqlysve 37
                     +++i++++a++++   i+a++   +  +q++++e
       CDO73244.1 63 RRPITADSAIMHPHQKILALK--AARTLQVFNIE 94
                     679******************..55559999997 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.6e-08
                      TCEEEECCCEEEEECCEEEEEE.........CETEEEEEEEE CS
  Clathrin_propel   3 nsqiinfptatneswlfiiain.........gtkkGqvqlys 35 
                      ++qiin++++++e+wl++i+i+         + +kG +qlys
       CDO73244.1 151 GAQIINYRASADEKWLVLIGISgnttnpaafK-VKGSIQLYS 191
                      68**********************99999966.99****998 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.0005
                      TTCEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   2 ansqiinfptatneswlfiiaingtkkGqvqlysve 37 
                      a +++i+ ++   +  lf + ++++++ ++++++++
       CDO73244.1 205 AAFAEIKLDGHQKPTKLFTFSVRTATGAKLHIVEID 240
                      789999999999**********************97 PP

  == domain 5  score: 24.9 bits;  conditional E-value: 9.2e-09
                      EEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   6 iinfptatneswlfiiaingtkkGqvqlysve 37 
                       ++fp+a+++s +  i++  tk+G+++ly++e
       CDO73244.1 262 TNDFPVAMQVSKKHGIIYLVTKYGFIHLYDLE 293
                      79****************************98 PP

  == domain 6  score: 29.2 bits;  conditional E-value: 4e-10
                      CTTCEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   1 nansqiinfptatneswlfiiaingtkkGqvqlysve 37 
                      n++s +++f+ta++e +++ii++n  kkGqv+++sv+
       CDO73244.1 301 NRISGETIFVTAEHEASNGIIGVN--KKGQVLSVSVD 335
                      799*********************..*********98 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.1   1.7e-33   3.1e-30       1      66 []     361     426 ..     361     426 .. 0.99
   2 ?   -2.5   0.0       2.8     5e+03      22      43 ..    1216    1237 ..    1209    1245 .. 0.78
   3 ?   -3.7   0.0       6.8   1.2e+04      21      33 ..    1539    1551 ..    1536    1552 .. 0.84

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 1.7e-33
  Clathrin_H_link   1 gLpGaddlyvqqFeqllaqgnykeAakvAaespqgiLRtpetIqrfkqvpaqpgqlspllqYFgtL 66 
                      +LpGad+ly++q++ql+++g+y eAakvAa+sp+giLRt+++I+ fk++p++pg lsp+lqYFg+L
       CDO73244.1 361 NLPGADELYIKQYQQLFQSGQYGEAAKVAANSPRGILRTAQVIESFKAAPSPPGGLSPILQYFGIL 426
                      8***************************************************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
  Clathrin_H_link   22 ykeAakvAaespqgiLRtpetI 43  
                         +Aak+  +s ++  R ++t+
       CDO73244.1 1216 LYQAAKILFTSISNWARLATTL 1237
                       44799**999999998888776 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 6.8
  Clathrin_H_link   21 nykeAakvAaesp 33  
                        yk+A+  Aa+s+
       CDO73244.1 1539 LYKDAIITAATSE 1551
                       59********997 PP

>> Clathrin-link  Clathrin, heavy-chain linker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   9.6e-15   1.7e-11       1      24 []     336     359 ..     336     359 .. 0.99
   2 ?   -2.4   0.0       1.8   3.2e+03      10      16 ..    1051    1057 ..    1046    1057 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 9.6e-15
  Clathrin-link   1 EdnIIPYIlntLnNpdLALrlAsR 24 
                    E++I+PYIl+tLnN++LA++lAsR
     CDO73244.1 336 EQTIVPYILTTLNNTELAFKLASR 359
                    99*********************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
  Clathrin-link   10 ntLnNpd 16  
                     ++L+N+d
     CDO73244.1 1051 DKLQNYD 1057
                     79***98 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.5     0.022        39      86     169 ..      45     129 ..      23     137 .. 0.77
   2 ?    0.8   0.0      0.11     2e+02     117     150 ..     276     308 ..     258     357 .. 0.80
   3 ?   -2.7   0.0       1.3   2.3e+03     269     322 ..     585     638 ..     580     640 .. 0.79
   4 !    7.0   0.0    0.0014       2.5     335     378 ..    1097    1140 ..    1091    1177 .. 0.85
   5 !    9.2   0.0   0.00031      0.55     335     371 ..    1242    1278 ..    1238    1313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.022
                    XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
  Coatomer_WDAD  86 essksvkifknfkekktksikleyqvdkifg...GalLgvksegsvsfYDweqgklvrridvkkvknVvwsd.dgelvalvskdtvyi 169
                    +++++v+i  ++ + + + +  + ++d+ +      +L +k   ++ ++++e+++ v++   ++   V+w+  +g+ + lv++++vy 
     CDO73244.1  45 NETNQVVI-VDLADAN-NVLRRPITADSAIMhphQKILALKAARTLQVFNIETKQKVKSHVNNE-DVVFWKWiSGSTIGLVTETAVYH 129
                    55677777.4554444.4666666666544447889*********************9855555.77888853799999999999986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
                    XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 117 GalLgvksegsvsfYDweqgklvrridvkkvknV 150
                    G + +v++ g++++YD+e+g  +   +++  + +
     CDO73244.1 276 GIIYLVTKYGFIHLYDLETGACIYMNRISG-ETI 308
                    88999999999*****99999998766665.555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.3
                    XXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXX-GGGSS- CS
  Coatomer_WDAD 269 efktavlrkdleevlkiiaasnllpeip.keegqkiirfLekkgypelAlqlvqD 322
                     ++t +l+ +l + + ++a + l+++i  +  + +i++  ek g ++ Al+l  D
     CDO73244.1 585 HLQTRLLEMNLLH-APQVADAILVNQILtHFDRPRIANLCEKAGLLQRALELYDD 638
                    5677777777776.66667778887877577899*****************9988 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0014
                     -HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHTT-H CS
  Coatomer_WDAD  335 nLelAlelakelddeekWkkLgdaAlsqgniklaeeayqkakdf 378 
                      Le  +e a + +++e+W++L++a l   +ik a ++y ka d 
     CDO73244.1 1097 SLERGVEYAVKVNKPEVWSRLAKAQLDGLRIKDAIDSYIKADDP 1140
                     5888999*********************************9864 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00031
                     -HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHH CS
  Coatomer_WDAD  335 nLelAlelakelddeekWkkLgdaAlsqgniklaeea 371 
                     + + A+e a+++ + ++Wk++  a +++g++ la+ +
     CDO73244.1 1242 ENQAAVESARKAGNTQVWKQVHAACVEKGEFRLAQIC 1278
                     5578*******************************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       0.9   1.6e+03       6      24 ..     371     389 ..     366     392 .. 0.80
   2 ?   -3.5   0.0        10   1.8e+04      12      41 ..     560     590 ..     556     592 .. 0.71
   3 ?    1.8   0.0      0.33   5.9e+02       7      28 ..     619     640 ..     617     658 .. 0.81
   4 ?    0.1   0.0       1.1     2e+03       1      26 [.     731     756 ..     731     757 .. 0.90
   5 ?   -0.8   0.0       2.3     4e+03      15      43 ..     859     887 ..     850     888 .. 0.83
   6 ?   -3.9   0.0        10   1.8e+04       5      18 ..     947     960 ..     945     960 .. 0.84
   7 ?   -1.0   0.0       2.5   4.5e+03       1      27 [.    1111    1137 ..    1111    1148 .. 0.84
   8 ?    3.2   0.1      0.12   2.1e+02      12      42 ..    1151    1184 ..    1140    1186 .. 0.76
   9 ?    2.1   0.0      0.26   4.7e+02       4      27 ..    1230    1253 ..    1228    1270 .. 0.91
  10 !   10.4   0.1   0.00055      0.99       6      42 ..    1291    1327 ..    1286    1329 .. 0.86
  11 ?   -3.5   0.0        10   1.8e+04       6      29 ..    1366    1390 ..    1362    1395 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.9
      TPR_14   6 alaeallalGdpdeAiall 24 
                 +  + l+++G++ eA++++
  CDO73244.1 371 KQYQQLFQSGQYGEAAKVA 389
                 556789*********9986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 10
      TPR_14  12 lalGdpdeAiallrralala.Pddaeawlll 41 
                 + +   + A   l +al+++ P++a ++++l
  CDO73244.1 560 MSQNMIQPATSFLLEALKDNkPEQAHLQTRL 590
                 5566667777788889998758888888777 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.33
      TPR_14   7 laeallalGdpdeAiallrral 28 
                 +a +++ +G +++A++l++++ 
  CDO73244.1 619 IANLCEKAGLLQRALELYDDLA 640
                 5889999999999999999975 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.1
      TPR_14   1 peallalaeallalGdpdeAiallrr 26 
                 pe++ ++ +a  + G+ +e ++++r+
  CDO73244.1 731 PEVHFKYIQAATRTGQIREVERICRE 756
                 678899***************99986 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.3
      TPR_14  15 GdpdeAiallrralalaPddaeawlllaq 43 
                  +++  +  l+++++ + +d++++ +la+
  CDO73244.1 859 NRLKLILPWLEARVQEGSQDPAVYNALAK 887
                 5666678899**************99998 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 10
      TPR_14   5 lalaeallalGdpd 18 
                 ++ a++l ++++pd
  CDO73244.1 947 KQQARYLVRRRQPD 960
                 578999*9999997 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 2.5
      TPR_14    1 peallalaeallalGdpdeAiallrra 27  
                  pe++ +la+a l   + ++Ai+ + +a
  CDO73244.1 1111 PEVWSRLAKAQLDGLRIKDAIDSYIKA 1137
                  789999****99999999999998777 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.12
      TPR_14   12 lalGdpdeAiallrrala..laPd.daeawllla 42  
                   ++G++d+ +++l+ a +  + P+ d e+ +++a
  CDO73244.1 1151 SRAGKYDDLVRYLQMARKtlREPKiDTELAYAYA 1184
                  589*************884446663345666665 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.26
      TPR_14    4 llalaeallalGdpdeAiallrra 27  
                  +++la  l  lG+ ++A++ +r+a
  CDO73244.1 1230 WARLATTLIYLGENQAAVESARKA 1253
                  99******************9998 PP

  == domain 10  score: 10.4 bits;  conditional E-value: 0.00055
      TPR_14    6 alaeallalGdpdeAiallrralalaPddaeawllla 42  
                  al++ ++++G +de i ll++ l+l  ++  + ++la
  CDO73244.1 1291 ALVQMYERRGLFDEIISLLEAGLSLERAHMGIFTELA 1327
                  899*********************9988877777776 PP

  == domain 11  score: -3.5 bits;  conditional E-value: 10
      TPR_14    6 alaeallalGdpd.eAiallrrala 29  
                  +l+ ++   +++d +A+a+ +r  +
  CDO73244.1 1366 ELVFLYIKYDEFDnAALAMIERSAD 1390
                  5666677777887558888887754 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7     3e+03     152     193 ..     895     936 ..     891     949 .. 0.84
   2 ?   10.5   0.0   0.00017      0.31     139     192 ..    1328    1381 ..    1323    1395 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
  Acetyltransf_15 152 rlekiltfkdlvkvikkekrseekgkylamfckvndflnkkk 193
                      + e++l+ ++l++    +k +e ++ yla +++ + f+ ++ 
       CDO73244.1 895 NPEQFLKENNLYEPLVVGKFCEARDPYLAYIAYAKGFCDEEL 936
                      66899999999999999*************999999998765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00017
  Acetyltransf_15  139 glfvksgPeelkkrlekiltfkdlvkvikkekrseekgkylamfckvndflnkk 192 
                       +l+ k+ Pe+l ++l+ +  + +  kvik  +r++  +++  ++ k+++f n++
       CDO73244.1 1328 ILYSKYKPEKLMEHLKLFVGRINIPKVIKAAERAHLWPELVFLYIKYDEFDNAA 1381
                       78************************************************9986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.079   1.4e+02       5      23 ..     619     637 ..     618     643 .. 0.90
   2 ?   -2.5   0.0         4   7.2e+03       2      12 ..     882     892 ..     881     893 .. 0.83
   3 ?    0.9   0.0      0.32   5.7e+02      10      24 ..    1151    1165 ..    1148    1176 .. 0.87
   4 ?   -1.8   0.1       2.3   4.2e+03       3      21 ..    1231    1249 ..    1230    1254 .. 0.84
   5 ?    5.4   0.0     0.012        21       5      31 ..    1292    1316 ..    1291    1335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.079
       TPR_7   5 LarlysrlGdyeeAielye 23 
                 +a+l+++ G  ++A+ely 
  CDO73244.1 619 IANLCEKAGLLQRALELYD 637
                 89***************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4
       TPR_7   2 LlnLarlysrl 12 
                 +++La +y + 
  CDO73244.1 882 YNALAKIYIDS 892
                 89******875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.32
       TPR_7   10 srlGdyeeAielyeq 24  
                  sr G+y++++++++ 
  CDO73244.1 1151 SRAGKYDDLVRYLQM 1165
                  689*********987 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.3
       TPR_7    3 lnLarlysrlGdyeeAiel 21  
                   +La +   lG+ + A+e 
  CDO73244.1 1231 ARLATTLIYLGENQAAVES 1249
                  68999999********985 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.012
       TPR_7    5 LarlysrlGdyeeAielyeqsLaltkd 31  
                  L ++y+r+G ++e i+l+e+  +l  +
  CDO73244.1 1292 LVQMYERRGLFDEIISLLEA--GLSLE 1316
                  7899***************9..66544 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.089   1.6e+02       6      25 ..     618     637 ..     618     638 .. 0.92
   2 ?   -2.7   0.4       3.4   6.1e+03      10      21 ..    1077    1088 ..    1076    1089 .. 0.89
   3 ?    4.0   0.0     0.027        48       1      27 [.    1111    1137 ..    1111    1137 .. 0.95
   4 ?    2.7   0.0     0.068   1.2e+02       4      27 ..    1230    1253 ..    1229    1253 .. 0.95
   5 ?    0.6   0.0      0.33   5.9e+02       8      22 ..    1518    1532 ..    1518    1533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.089
                 HHHHHHHHTT-HHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyye 25 
                 +++n++ k g ++ Ale y+
  CDO73244.1 618 RIANLCEKAGLLQRALELYD 637
                 689**************996 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
                  HHHHTT-HHHHH CS
       TPR_1   10 ayfklgkydeAl 21  
                  +y k +++ +A+
  CDO73244.1 1077 IYKKYEQHAQAI 1088
                  8**********9 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.027
                  HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    1 akalynlGnayfklgkydeAleyyekA 27  
                  ++++ +l+ a +   + ++A++ y kA
  CDO73244.1 1111 PEVWSRLAKAQLDGLRIKDAIDSYIKA 1137
                  589*********************998 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.068
                  HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    4 lynlGnayfklgkydeAleyyekA 27  
                  + +l+ ++ +lg+ + A+e  +kA
  CDO73244.1 1230 WARLATTLIYLGENQAAVESARKA 1253
                  899****************99998 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.33
                  HHHHHHTT-HHHHHH CS
       TPR_1    8 GnayfklgkydeAle 22  
                  +++y k++k++e ++
  CDO73244.1 1518 AHIYKKNKKWEESIA 1532
                  789*********985 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.62   1.1e+03      11      22 ..     376     387 ..     374     390 .. 0.87
   2 ?    1.9   0.3      0.18   3.1e+02       6      26 ..     618     638 ..     618     643 .. 0.85
   3 ?   -3.1   0.0       6.7   1.2e+04       2      13 ..     880     891 ..     879     893 .. 0.82
   4 ?    0.9   0.0      0.36   6.4e+02       1      27 [.    1111    1137 ..    1111    1137 .. 0.91
   5 ?    3.9   0.1     0.038        69       4      27 ..    1230    1253 ..    1228    1254 .. 0.95
   6 ?   -0.3   0.1      0.85   1.5e+03       7      22 ..    1517    1532 ..    1513    1533 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.62
       TPR_2  11 yyklgdyeeAle 22 
                 ++++g+y eA++
  CDO73244.1 376 LFQSGQYGEAAK 387
                 799*******98 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
       TPR_2   6 nlGlayyklgdyeeAleafek 26 
                 +++++++k+g +++Ale+++ 
  CDO73244.1 618 RIANLCEKAGLLQRALELYDD 638
                 57999999*********9985 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.7
       TPR_2   2 ealynlGlayyk 13 
                  ++++l+++y+ 
  CDO73244.1 880 AVYNALAKIYID 891
                 689******986 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.36
       TPR_2    1 aealynlGlayyklgdyeeAleafekA 27  
                  +e++ +l++a +   + ++A++ + kA
  CDO73244.1 1111 PEVWSRLAKAQLDGLRIKDAIDSYIKA 1137
                  699******************999776 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.038
       TPR_2    4 lynlGlayyklgdyeeAleafekA 27  
                  + +l+  +++lg+ + A+e  +kA
  CDO73244.1 1230 WARLATTLIYLGENQAAVESARKA 1253
                  899*****************9998 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.85
       TPR_2    7 lGlayyklgdyeeAle 22  
                   + +y k++++ee ++
  CDO73244.1 1517 AAHIYKKNKKWEESIA 1532
                  5889*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.48
# Mc/sec: 10620.38
//
Query:       CDO73245.1  [L=874]
Description: hypothetical protein BN946_scf185008.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-20   72.9   0.7    4.1e-20   71.9   0.7    1.4  1  Fungal_trans  Fungal specific transcription factor domain
    2.1e-05   24.5   9.2    3.8e-05   23.7   9.2    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.7   4.5e-24   4.1e-20      26     190 ..     276     436 ..     249     456 .. 0.78

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 4.5e-24
  Fungal_trans  26 senssksayasplll......lailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralher. 115
                   +++++ +++ +pl++      ++++a+G+l+  s+ +++      + +e+++   ra+ ++  + + +++ l+++qsL l+++y++ s++  +    
    CDO73245.1 276 YNTDKTADIEDPLVAhqlsllYMVFAIGSLMDTSRPAYN------VEAEKYHHLARAALFQ-SPIFEEPT-LTAVQSLYLMAFYLFLSERHGSGVGs 364
                   455555555555555555555*****************9......4444556666877777.55555555.9*****************74443334 PP

  Fungal_trans 116 ...hhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddd 190
                      ++g+av+l +s+gLhr+   +        + +e ++rr  +w  ++ D + ++ lGrpp +    i++  P  +d
    CDO73245.1 365 rwaFMGLAVKLGVSMGLHRDAGKWH------ISNDEVQRRREAFWELYSYDLLQSFTLGRPPSFTLAHIDCKKPYTED 436
                   666********************99......*******************************9999999999887776 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   9.2   4.2e-09   3.8e-05       2      28 ..      35      62 ..      34      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.2e-09
                S-HHHHHCT---STSSSS-HHHHHCT..H CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..l 28
                +C +Cr+ K +Cd+ +P C++C+k++  +
  CDO73245.1 35 SCAECRRLKLRCDRAIP-CGSCVKRGcaA 62
                8****************.*******9555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5773.86
//
Query:       CDO73246.1  [L=463]
Description: hypothetical protein BN946_scf185008.g8 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-43  148.5   0.0      2e-43  148.5   0.0    3.0  4  PDCD2_C        Programmed cell death protein 2, C-terminal pu
  ------ inclusion threshold ------
      0.027   14.3   0.4      0.037   13.8   0.4    1.2  1  ATP11          ATP11 protein
       0.03   14.3   0.1       0.06   13.4   0.1    1.4  1  FlpD           Methyl-viologen-reducing hydrogenase, delta su
       0.25   11.5   3.9         11    6.3   0.1    2.8  2  zf-RING_7      C4-type zinc ribbon domain
       0.36   10.6   7.6        5.5    6.8   0.9    3.5  3  YdjO           Cold-inducible protein YdjO
       0.66   10.3   3.6         15    5.9   0.1    2.6  2  zinc_ribbon_9  zinc-ribbon
       0.74   10.0   4.4        1.2    9.3   4.4    1.3  1  HemY_N         HemY protein N-terminus


Domain annotation for each model (and alignments):
>> PDCD2_C  Programmed cell death protein 2, C-terminal putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.0      0.33   8.4e+02      90     125 ..      51      83 ..      46     116 .. 0.71
   2 ?   -2.0   0.1       1.3   3.3e+03      25      38 ..     133     146 ..     108     162 .. 0.44
   3 ?   -2.3   0.4       1.6     4e+03      44      52 ..     206     214 ..     181     240 .. 0.39
   4 !  148.5   0.0     8e-47     2e-43      44     175 .]     278     461 ..     244     461 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
     PDCD2_C  90 kPLwlsskkspeeesdipkCsnCgskrvFEfQlmPq 125
                 +P +l++ + p+   +  +C+nC++++   +Q+   
  CDO73246.1  51 HPSFLATPHPPT---SHATCPNCSRPMELLIQIWCP 83 
                 555666433333...346788888888777777655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
     PDCD2_C  25 keekekseleells 38 
                 +e+ke +++++ ++
  CDO73246.1 133 REQKELEAAKAAAA 146
                 11111111111111 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.6
     PDCD2_C  44 ekskeekes 52 
                 ++s +e+es
  CDO73246.1 206 GDSGSETES 214
                 111111111 PP

  == domain 4  score: 148.5 bits;  conditional E-value: 8e-47
     PDCD2_C  44 ekskeekeseeeelekyeksl..dktfekFkkriaaepeQvlRYelggkPLwls.............................skkspeeesdipkCsn 111
                 + + ++  s++++ e ye+s   d++fe+F++r+++e eQ+lRYe+gg+PL+++                             + k++ + +++p+C++
  CDO73246.1 278 P-KGKDGGSSQWDFEGYENSFdvDQAFERFSRRVSYEGEQCLRYERGGTPLPYAsdkvfdqlfplppapptpvtkgefmvmppR-KRTFAPESVPRCPH 374
                 2.223345599*******9989************************************************************64.55555569****** PP

     PDCD2_C 112 CgskrvFEfQlmPqlinvLeveee.........................ekesldWgtilVytCeksCeekeeeeneegyveEfvlvQw 175
                 C s+rvFE+QlmP+linvL++  e                         e+++++Wgt+++++Cek+C+   e+e+ ++++eE+vlvQw
  CDO73246.1 375 CRSRRVFECQLMPNLINVLRAPVEeqgkkltdeerraevlravrkegaaERRGMEWGTCMIFSCEKDCS--LEKEGGSTWREEYVLVQW 461
                 ********************999999999999999999999999999998999***************6..55689************9 PP

>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   1.5e-05     0.037       2      64 ..     118     204 ..     117     238 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........................XXXXXXXXXXXXXXXXXXXX CS
       ATP11   2 vlekYreKLeqkakeeglesieeLkeaykdkieekrkeaaaid........................leesksesekekeakassse 64 
                 + +kY+eKLe+k +++  +++e  k+a+++ +++++ +++  +                        ++e++++  ++++a+++ s+
  CDO73246.1 118 FNRKYAEKLERKLARREQKELEAAKAAAAEAAKKSQPKSNPFAlgaaasapnpfglgsqifggsdaaPDEATQPGVQTESAAHDRST 204
                 679***************999999999999888888877555589999999999988888777665422222222222222222222 PP

>> FlpD  Methyl-viologen-reducing hydrogenase, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.3e-05      0.06      56     107 ..      94     145 ..      88     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
        FlpD  56 lvlgChpgdChyvkGnekaerrveklkelleelgiepeRvrleevsaaegek 107
                 +v gC +g+C+ ++G+ +a r ++  ++  e+l+ +  R + +e++aa++++
  CDO73246.1  94 FVWGCANGSCQRKQGSVRAWRELRFNRKYAEKLERKLARREQKELEAAKAAA 145
                 799******************************9999999999998887765 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.6     0.008        20      24      31 ..      65      72 ..      63      72 .. 0.92
   2 ?    6.3   0.1    0.0044        11      21      29 ..     367     375 ..     360     377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.008
                EE-TTT-- CS
   zf-RING_7 24 vtCpeCGR 31
                +tCp+C+R
  CDO73246.1 65 ATCPNCSR 72
                69****99 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0044
                 TB-EE-TTT CS
   zf-RING_7  21 devvtCpeC 29 
                 + v++Cp+C
  CDO73246.1 367 ESVPRCPHC 375
                 569****** PP

>> YdjO  Cold-inducible protein YdjO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.046   1.2e+02      39      50 ..      64      75 ..      61      80 .. 0.85
   2 ?    3.1   0.0     0.031        80      16      27 ..      93     104 ..      83     109 .. 0.82
   3 ?    6.8   0.9    0.0021       5.5      33      58 ..     363     388 ..     360     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.046
        YdjO 39 ePtCplCkseMv 50
                + tCp C+ +M+
  CDO73246.1 64 HATCPNCSRPME 75
                569********7 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.031
        YdjO  16 tkvWeCtsedCn 27 
                   vW C++ +C+
  CDO73246.1  93 LFVWGCANGSCQ 104
                 569********7 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0021
        YdjO  33 nFsfeeePtCplCkseMvkevrmLpk 58 
                  F+ e  P Cp C+s+ v e +++p+
  CDO73246.1 363 TFAPESVPRCPHCRSRRVFECQLMPN 388
                 69999**********99988888876 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.7     0.018        47      15      28 ..      59      71 ..      53      73 .. 0.65
   2 ?    5.9   0.1     0.006        15      21      32 ..     369     380 ..     360     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.018
  zinc_ribbon_9 15 spdedsdvlCPhCg 28
                   +p  +s ++CP+C 
     CDO73246.1 59 HP-PTSHATCPNCS 71
                   33.345567****6 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.006
  zinc_ribbon_9  21 dvlCPhCgggFV 32 
                     + CPhC++  V
     CDO73246.1 369 VPRCPHCRSRRV 380
                    446*****9766 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.4   0.00048       1.2      44     103 ..     107     167 ..      92     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00048
      HemY_N  44 parvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklsea.pllayllaAqAa 103
                  ++vr+wr+ r +rk  e+l++ l   ++ + ++A+ aaa+aak+s+  +   +l aA +a
  CDO73246.1 107 QGSVRAWRELRFNRKYAEKLERKLARREQKELEAAKAAAAEAAKKSQPkSNPFALGAAASA 167
                 6789****************************************99665434455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3257.59
//
Query:       CDO73247.1  [L=379]
Description: hypothetical protein BN946_scf185008.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-05   24.7   0.0    4.7e-05   23.9   0.0    1.3  1  PH             PH domain
    0.00017   22.1  13.6    0.00031   21.2  13.6    1.5  1  DUF737         Protein of unknown function (DUF737)
  ------ inclusion threshold ------
        5.9    5.2   5.6        8.8    4.6   5.6    1.2  1  CBP_BcsG       Cellulose biosynthesis protein BcsG
        7.9    6.5  17.2         12    5.9  17.2    1.3  1  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0     1e-08   4.7e-05      16      94 ..     285     365 ..     263     374 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1e-08
                 C...SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC...TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHH CS
          PH  16 k...swkkrwfvLkdsellyykndksekdkepkgsislsncevvevva...tedpkrkfcfelriverngsrtyllqasseeerk 94 
                     swk+r+f L+++ l+++k+   e +++p ++i ls ++  ++ +   +e ++ +++f l +   ++ + + + ++s+++++
  CDO73247.1 285 EdyiSWKRRHFQLREDALVLFKDA--EDHSQPLETIALSRIQRIREWQegfEELEPIPNSFGLELR--GERDAHSMFTDSADDKE 365
                 13449*******************..99***************99887999667777777777555..33589999999999987 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2  13.6   6.9e-08   0.00031      42     156 ..      84     235 ..       8     241 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.9e-08
      DUF737  42 spspeelap.................pqessskaaestsapssasssssqakve.eeelrkkikeelqkr.............leeeqakaea.vqeel 108
                 +ps++ + p                   ++s+++a+++s+p++a+    +a+ + e+e r+  +ee +++             +++e a ++a ++e+l
  CDO73247.1  84 PPSSPAVPPkptrartassripiaasRIPASERRAATVSTPEEAELRRREAQRRrEQEEREALREEAERQarikrekeqllqqFAQEEAARKAaLEEQL 182
                 222212222334444334444333333344477777777777666555444433266666667777666677777777777776555555555477777 PP

      DUF737 109 akllerEreaaq.....eelteailrerlstedErlkaqllelerkarqLeek 156
                 ++  e+ r+ ++       l++ ++ er   e+Er++ ++ +l+r+  +Le++
  CDO73247.1 183 RRASEERRKREAiereaAALESMVAAERRRQERERRRLETEKLQRWRGELEQR 235
                 7766654443334455456677778888888888888888888***9999998 PP

>> CBP_BcsG  Cellulose biosynthesis protein BcsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.6     0.002       8.8     134     192 ..     127     185 ..     110     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.002
    CBP_BcsG 134 ksaaaaaaakaaeaeaakaaaaaaqaaeansanldealeaFyekekkrkvefpaklaad 192
                 ++    +a+ ++e+e+++a +++a+ ++  + + ++ l++F ++e+ rk++++++l+  
  CDO73247.1 127 AELRRREAQRRREQEEREALREEAERQARIKREKEQLLQQFAQEEAARKAALEEQLRRA 185
                 3333344444444555555555555555567799*******************998765 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  17.2    0.0027        12      78     190 ..     123     234 ..      97     286 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0027
  Asp-B-Hydro_N  78 peeeaevvaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseea 173
                    ++eeae   +e +   e++e+++++ee++ q +  +e+    +  +  +ee  +++  +++l+++s+er++ ++ ++   + E  +  e+  +e +
     CDO73247.1 123 TPEEAELRRREAQRRREQEEREALREEAERQARIKREKEQLLQ--QFAQEEAARKAALEEQLRRASEERRKREAIEREAAALESMVAAERRRQERE 216
                    2344455444444445555555555555555444444433333..222222233333344555556666666666666666665555555444333 PP

  Asp-B-Hydro_N 174 k.kdmkekaseeeneksk 190
                    + ++  ek ++ + e ++
     CDO73247.1 217 RrRLETEKLQRWRGELEQ 234
                    303333444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2357  (0.131463); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 2386.20
//
Query:       CDO73248.1  [L=559]
Description: hypothetical protein BN946_scf185008.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-73  245.9   0.0    4.4e-73  245.4   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    2.9e-42  144.0   0.1    4.8e-42  143.3   0.1    1.4  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
    1.1e-17   64.3   0.6    2.4e-17   63.2   0.6    1.7  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.4   0.0   7.4e-77   4.4e-73       1     213 []     198     421 ..     198     421 .. 0.98

  Alignments for each domain:
  == domain 1  score: 245.4 bits;  conditional E-value: 7.4e-77
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTS.......S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.......x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsd.......d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareas 89 
                  Gi+ +Da++pi++Gqr+li+g++++Gkt+++ +++++q++ +       + +++yv++G+++++va+++++++e+++mk++++va+t++e++ +++++
   CDO73248.1 198 GIKPIDAMVPIGRGQRELIIGDRQTGKTAVAiDTILNQKRWNegkdedkKlYCVYVAVGQKRSTVAQLVKTLEENDAMKYSIIVAATASEAAPLQYLA 295
                  899***************************99*****97666889999768*********************************************** PP

                  HHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSS..EEEEEEEEEEE-GGCSTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  90 iytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdr..tGsvtivaavspaggDfsdpvttatlg 185
                  ++ g++++E+frd+gk++l+i+d+ls++a A+r++sl+l+++p++++yp+++++ +++l+ERa+k++d+   Gs+t++++++++ggD+s++++t++++
   CDO73248.1 296 PFSGCAMGEWFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDKfgGGSLTALPIIETQGGDVSAYIPTNVIS 393
                  ******************************************************************888889************************** PP

                  HSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 186 itdgfivLdkklaqrkhfPainvlvSvS 213
                  itdg+i+L+ +l+ r+++Painv+ SvS
   CDO73248.1 394 ITDGQIFLEAELFFRGVRPAINVGLSVS 421
                  **************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.1     8e-46   4.8e-42       1     125 [.     428     551 ..     428     552 .. 0.99

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 8e-46
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Qtk+mkk agsLkl laqYrE++aFaqFgsdLD++t+  L+rG+rl+elLkQ qy+pl++e qv i+ya+ nglld+ipv++++ +e+e+ ++l++
     CDO73248.1 428 QTKIMKKFAGSLKLYLAQYREVAAFAQFGSDLDASTRFLLSRGARLTELLKQGQYQPLAMEIQVPIIYAGVNGLLDSIPVDQITLWEAEFRAHLTA 523
                    9*********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaike 125
                    ++  +leei++  +++ ++ee++k+++++
     CDO73248.1 524 TQGPLLEEISKG-AITPQIEEQIKKVVED 551
                    *********998.9***********9986 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.6   4.1e-21   2.4e-17       2      69 .]      74     141 ..      73     141 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 4.1e-21
                    EEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   2 vqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                    v+++G v++v++gi+r+ g++n+ + e+vef+++++g+ lnl+ d+V+v ++g+++ +++G++VkrTG
     CDO73248.1  74 VEETGRVLSVGDGIARVWGLKNVQAEEMVEFSSGIRGMCLNLEADNVGVSIFGNDRAIKEGDTVKRTG 141
                    789****************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3794.74
//
Query:       CDO73249.1  [L=153]
Description: hypothetical protein BN946_scf185008.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-25   88.9   0.2    2.7e-25   88.5   0.2    1.2  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein
  ------ inclusion threshold ------
       0.02   15.0   0.0      0.032   14.3   0.0    1.3  1  UvrA_inter      UvrA interaction domain


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.2   3.1e-29   2.7e-25       2     100 ..      41     142 ..      40     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 3.1e-29
                     EEEEECSTEEEEESSSEEEEEESS.SSSTTCEEEESSEEE....EE.ECTSSSE..SSTCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EE CS
  Ribosomal_L21p   2 yAiietgGkqykVeegdvlkvekl.eaevgdkveldkVllvgskddvkvGaplv..egakVeaevvehgkgkkiivfkkkrrknyrrkqghRqky 93 
                     y + +++G++y  ++ d+l+v++l +++vgd ++l+++  +gs+++++ G+p++  e+++Vea+vveh+kg++  +fkkkrrk+y+r+ +h+q y
      CDO73249.1  41 YVVASVAGRKYLLTPRDLLTVPRLkDVKVGDVLRLSDIHELGSREFTIRGNPTIppERVRVEATVVEHTKGQMEFIFKKKRRKGYERTVQHKQTY 135
                     8999********************889***************************55569************************************ PP

                     EEEEEEE CS
  Ribosomal_L21p  94 tklrItk 100
                     t+lrI  
      CDO73249.1 136 TRLRIGP 142
                     *****75 PP

>> UvrA_inter  UvrA interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.6e-06     0.032      17      55 ..      97     135 ..      87     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.6e-06
  UvrA_inter  17 tkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiy 55 
                 +++ + a vv++ kg+++ ++++ ++kG+ r +  +++y
  CDO73249.1  97 ERVRVEATVVEHTKGQMEFIFKKKRRKGYERTVQHKQTY 135
                 578899*************************98888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1067.98
//
Query:       CDO73250.1  [L=1413]
Description: hypothetical protein BN946_scf185008.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-25   88.5   6.5      7e-09   35.7   0.0    6.3  6  FF            FF domain
      2e-21   76.1   0.0    8.6e-21   74.0   0.0    2.1  1  PX            PX domain
    1.1e-13   51.0  16.9    1.6e-07   31.3   4.7    2.9  2  WW            WW domain
    0.00041   20.0  19.0     0.0052   16.4   1.4    3.0  3  Vps5          Vps5 C terminal like
  ------ inclusion threshold ------
       0.24   11.9   0.6       0.94   10.1   0.6    2.0  1  LuxT_C        Tetracycline repressor LuxT C-terminal domain
       0.26   12.2   4.7       0.66   10.9   2.9    2.7  2  DUF5339       Family of unknown function (DUF5339)
        7.7    7.3  11.8       0.15   12.8   2.0    3.1  3  FliD_N        Flagellar hook-associated protein 2 N-terminus


Domain annotation for each model (and alignments):
>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.9   1.2e+04       9      29 ..     326     351 ..     325     353 .. 0.75
   2 !   35.7   0.0   2.7e-12     7e-09       3      51 .]     785     832 ..     783     832 .. 0.97
   3 !   10.8   0.0   0.00017      0.44       7      51 .]     856     900 ..     856     900 .. 0.96
   4 ?    2.5   0.2     0.065   1.7e+02       8      36 ..     925     952 ..     924     972 .. 0.85
   5 !   29.0   0.0   3.5e-10     9e-07      10      50 ..     980    1022 ..     975    1023 .. 0.94
   6 !    8.2   0.0    0.0011       2.9      18      48 ..    1175    1205 ..    1171    1207 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
                 HHHHCS.....SS-TTSSHHHHHHHC CS
          FF   9 LLkehk.....eitpkstWseikkil 29 
                 LL+e +      ++ +s + +i+k+l
  CDO73250.1 326 LLQEFEqnwaePLHEYSQFASIIKKL 351
                 67777766776788899999999987 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 2.7e-12
                 HHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   3 reaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 ++aF +LL+    +++++tW++++++++ Dp Y+al + +e+++++++y
  CDO73250.1 785 EKAFTHLLRKAG-VDANWTWDQTMRAIITDPLYKALNTLAEKKAAWQKY 832
                 78**********.*********************************998 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00017
                 HHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   7 keLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 + LLk + ++ +++t+ ++ +++ + p +   + ++eR+ +Fe+y
  CDO73250.1 856 RNLLKGNPNVFHYTTFATADRLFAQHPIWQQAKIEAERKLIFEEY 900
                 579999999***********************************9 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.065
                 HHHHHCSSS-TTSSHHHHHHHCTTSCCCH CS
          FF   8 eLLkehkeitpkstWseikkilenDpRYl 36 
                 +L+k +  ++  ++W++++++  + ++++
  CDO73250.1 925 ALFKKMD-VDVLTRWRQAHQMVLESEEWK 952
                 6899999.9999********988888886 PP

  == domain 5  score: 29.0 bits;  conditional E-value: 3.5e-10
                  HHHCSSS-TTSSHHHHHHHCTTSCCCHHG..TSHHHHHHHHHH CS
          FF   10 LkehkeitpkstWseikkilenDpRYlal..ldkseReelFed 50  
                  L e  ei+++++W+e+++ + nD+RYl++  +++s + elF+d
  CDO73250.1  980 LVEAGEIKARTKWKEVYPQFANDERYLNMlgHPGSNPIELFWD 1022
                  557779************************************9 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0011
                  TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHH CS
          FF   18 pkstWseikkilenDpRYlalldkseReelF 48  
                  ++ +++e+++  ++ p+Y+a++d++ R+++F
  CDO73250.1 1175 ANLSYEEALPYMQELPEYKAIEDDEGRRAAF 1205
                  68899****************9999999998 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   3.4e-24   8.6e-21      11     111 ..      91     194 ..      84     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 3.4e-24
                 EEEE.TTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS......CTTSHHHHHHHHHHHHHHHHHHHTSCHHHH CS
          PX  11 rets.gskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv......rkkdeefiekrrkgLeeyLqrllnhpelrn 102
                 + +   ++ + y++y ++ ++     + ++rYs+Fe+L+s L + +p+++iPp+P+k+++g +       k+d ++i++r+++L+ +L+r+++hp l+n
  CDO73250.1  91 ALKTsVNSTSPYITYVIKAGNA----EAHHRYSEFESLRSTLVKLYPTLIIPPIPSKQTIGDYaikqakAKEDAAMIARRKRMLQTFLNRIARHPILSN 185
                 4444489999999999999986....99*********************************99************************************ PP

                 SHHHHHHHH CS
          PX 103 sevlteFLe 111
                  +v+++FL+
  CDO73250.1 186 EHVFHRFLD 194
                 *******96 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   4.7   6.3e-11   1.6e-07       5      31 .]     610     635 ..     608     635 .. 0.98
   2 !   24.6   4.3   7.9e-09     2e-05       5      31 .]     651     675 ..     648     675 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 6.3e-11
                 EEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   5 WeeqwdpdsGrvYYyNheTgetqWekP 31 
                 W e++ p+ Gr+Y++N++T+e+ WekP
  CDO73250.1 610 WTEHRNPE-GRTYWFNTQTRESVWEKP 635
                 ********.*****************9 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 7.9e-09
                 EEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   5 WeeqwdpdsGrvYYyNheTgetqWekP 31 
                 W+e+++   Gr+YYyN+eT+e+ W+ P
  CDO73250.1 651 WKEYFSG--GRKYYYNTETKESKWDMP 675
                 9999888..8***************99 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.5   4.7e-06     0.012      22     171 ..     247     395 ..     238     409 .. 0.81
   2 !   16.4   1.4     2e-06    0.0052     161     232 ..     474     545 ..     468     549 .. 0.92
   3 ?   -3.7   1.0       2.7   6.9e+03     142     175 ..    1139    1172 ..    1129    1177 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.7e-06
        Vps5  22 qDewFedkkqeldslesqLkk.LykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvltLgetideylrl 119
                 +D+ F+d +   ++  ++L   ++k++    +  ++ a+  ael+++++ ++  +++ +ls+al++  +       ++++  ++   + +e ++ey ++
  CDO73250.1 247 PDQRFIDSEVFTNKFAAHLSGpMEKVTRRTMKRWSDYAQDHAELGATMNGFSL-NETGQLSTALEKTGQAIDATYISTTKLLQEFEQNWAEPLHEYSQF 344
                 56667777777777777776447777777778888889999999999999975.556679999999999888777777777777778899********* PP

        Vps5 120 igsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksqqdklqqlkke 171
                  + +k++++ R +   +++  ++ l+ k+eqle lek++++   +l+++ ++
  CDO73250.1 345 ASIIKKLLQYRHQKHAQYEMTQEALEAKREQLEELEKSERE-ARRLEEALNQ 395
                 *************************************9544.4788877665 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2e-06
        Vps5 161 qqdklqqlkkeveelerkvqeaekeFeeisetikkElerFetervedfknvvekyLesaiesqkevielWet 232
                 +++ +++ k+ + +le  ++ a ++ +  s+ti+ +l+rF++++v+d++++ + + ++  +  k+ +e We+
  CDO73250.1 474 RRNSITKTKETISQLEDALHLAAQDLKYSSSTIQADLDRFQRQKVADLREMAISMARTHRDWCKKNLEAWEE 545
                 4577899999************************************************999*********97 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.7
        Vps5  142 qelskkkeqleKlekaaksqqdklqqlkkeveel 175 
                    l+k+ e++ ++e+++++ qd l+ + k v el
  CDO73250.1 1139 TALKKQAEERRRAERKQRHLQDDLRYALKKVPEL 1172
                  4566666777777777777788888888887766 PP

>> LuxT_C  Tetracycline repressor LuxT C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   0.00037      0.94      17      68 ..     327     378 ..     319     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00037
      LuxT_C  17 adaleeSWveale.qaefkavlrlllslvssseqaeektaqalnklrelavek 68 
                 ++++e+ W+e l+   +f+ +++ ll+   +++ + e+t++al++ re++ e+
  CDO73250.1 327 LQEFEQNWAEPLHeYSQFASIIKKLLQYRHQKHAQYEMTQEALEAKREQL-EE 378
                 789*********9679***************9************999998.44 PP

>> DUF5339  Family of unknown function (DUF5339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.9   0.00026      0.66      16      53 ..     352     386 ..     341     387 .. 0.82
   2 ?   -2.6   0.0       4.2   1.1e+04      36      48 ..     543     555 ..     535     556 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
     DUF5339  16 iakaekqpgtktqadaikkqleqsKkqilalpkeqQea 53 
                 +++   + ++++q ++++  le++++q+ +l+k ++ea
  CDO73250.1 352 LQY---RHQKHAQYEMTQEALEAKREQLEELEKSEREA 386
                 333...389*************************9987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.2
     DUF5339  36 leqsKkqilalpk 48 
                  e++K++i+++p+
  CDO73250.1 543 WEEAKAEIAKIPD 555
                 5899999999885 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.0   5.7e-05      0.15       5      72 ..     344     411 ..     342     427 .. 0.74
   2 ?   -1.1   0.3       1.2   3.2e+03      16      52 ..     471     507 ..     465     533 .. 0.62
   3 ?   -1.9   0.1       2.3   5.8e+03      19      40 ..     811     832 ..     796     842 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.HH.XX.GGGGGXEEEEECST.TT CS
      FliD_N   5 tdslvkqlmkaerakldkleqkktklewkqsayrelnsklsnlksals.al.sk.sstfsakkatssde.sv 72 
                 ++s++k+l++   +k  ++e  ++ le+k++ ++el+++ ++ +  l+ al +  +st+    a+ss + s+
  CDO73250.1 344 FASIIKKLLQYRHQKHAQYEMTQEALEAKREQLEELEKSEREARR-LEeALnQGrPSTI---RASSSRSeSA 411
                 579**********************************99988888.4336633346666...5555554233 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
                 XXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH CS
      FliD_N  16 erakldkleqkktklewkqsayrelnsklsnlksals 52 
                 e+a+ + +++ k+++++  +a+    ++l+  +s+++
  CDO73250.1 471 ETARRNSITKTKETISQLEDALHLAAQDLKYSSSTIQ 507
                 6667777777777777777777666666655555443 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.3
                 XXXXXXXXXXXXXXXHHHHHHH CS
      FliD_N  19 kldkleqkktklewkqsayrel 40 
                   d+l+++ ++l +k++a+++ 
  CDO73250.1 811 ITDPLYKALNTLAEKKAAWQKY 832
                 4578999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1728  (0.0963802); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.53
# Mc/sec: 7992.41
//
Query:       CDO73251.1  [L=193]
Description: hypothetical protein BN946_scf185008.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-14   51.0   3.0      9e-14   51.0   3.0    1.8  2  PQ-loop          PQ loop repeat
  ------ inclusion threshold ------
      0.059   14.2   1.4      0.074   13.9   1.2    1.4  1  ER_lumen_recept  ER lumen protein retaining receptor


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.45     4e+03      36      49 ..      61      74 ..      57      82 .. 0.54
   2 !   51.0   3.0     1e-17     9e-14       2      60 ..      89     147 ..      88     148 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.45
     PQ-loop 36 lflllwllGdilsl 49
                ++ +l++l+ ++ +
  CDO73251.1 61 YTQYLEFLAAFILC 74
                55566666655543 PP

  == domain 2  score: 51.0 bits;  conditional E-value: 1e-17
     PQ-loop   2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpps 60 
                 ++ilg+i+l l++ + iPQ+i Nyk +S  G+ +++l+ w+ Gd+++++y++++++p++
  CDO73251.1  89 ISILGFIALGLESTLPIPQLISNYKQRSLYGFRMSTLIGWVGGDSFKTVYFFVQNSPLQ 147
                 689****************************************************9986 PP

>> ER_lumen_recept  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.2   8.3e-06     0.074      72     133 ..      51     128 ..       7     142 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.3e-06
  ER_lumen_recept  72 e...............llivpslllallfhpg.......ssktllevlwtfsiiLesvAilPQlillqktgevesltshyvfal 133
                      +               +l +  l+       +       +s+ ++++l  +++ Les   +PQli  +k+++   +    ++ +
       CDO73251.1  51 RpfsfwqwptytqyleFLAAFILCQ------SilflilgRSEIFISILGFIALGLESTLPIPQLISNYKQRSLYGFRMSTLIGW 128
                      1555555555444333222222222......2222223469****************************998777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1359.52
//
Query:       CDO73252.1  [L=482]
Description: hypothetical protein BN946_scf185008.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   63.9   0.1    1.7e-17   63.4   0.1    1.1  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    3.8e-05   23.7   0.0    6.7e-05   22.9   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   1.9e-21   1.7e-17     264     381 ..     278     397 ..     266     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.9e-21
       UDPGT 264 eleefvqssGehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWrfdgkkPstLak..ntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnG 360
                  + + +qs G + v+++S+Gsm  +    k+ a+ +aL +   + l    +++ s L++  ++ + kW+Pq ++L H  ++  +tHaG n+v+E i   
  CDO73252.1 278 FMDARLQSHGPKSVILISFGSMFWPPNAAKVGAVLNALMDKNIPPLSVIPEETMSRLQQyeAAFVSKWIPQHAVLSHEAAGWCLTHAGLNTVFECILAN 376
                 577889*********************************9999999999999999998533789*********************************** PP

       UDPGT 361 vPmvglPlFgdqrdNikrmea 381
                 vPm+  P+ +dq+ N+ +++ 
  CDO73252.1 377 VPMILWPIDADQPPNAVQLSE 397
                 ****************98765 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.5e-09   6.7e-05      50     119 ..     334     399 ..     324     417 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.5e-09
                      -TTTTCEEEEEESSSSHHHHHHHH-.EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHH CS
  Glyco_tran_28_C  50 veeltlkvevfefidkmaeaikaad.LvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekag 119
                      ++++ +   v + i+++a + ++a   ++++AG +t++E+  +++p+Il p +     +q  Na++l++ +
       CDO73252.1 334 LQQY-EAAFVSKWIPQHAVLSHEAAgWCLTHAGLNTVFECILANVPMILWPIDA----DQPPNAVQLSEDL 399
                      5555.45556667777777777777799**************************....********98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3366.36
//
Query:       CDO73253.1  [L=420]
Description: hypothetical protein BN946_scf185008.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-64  216.9   9.7    1.1e-46  158.8   1.5    4.9  4  DUF2408          Protein of unknown function (DUF2408)
  ------ inclusion threshold ------
      0.046   14.1   5.0         14    6.2   0.3    4.2  4  Snapin_Pallidin  Snapin/Pallidin
       0.08   12.3   1.0       0.14   11.5   1.0    1.4  1  DUF4407          Domain of unknown function (DUF4407)
      0.085   12.6   1.9       0.23   11.2   1.9    1.8  1  Use1             Membrane fusion protein Use1
       0.14   12.1   2.3       0.51   10.2   0.3    2.7  2  CK2S             Casein Kinase 2 substrate
       0.37   11.3   0.0       0.37   11.3   0.0    2.8  3  ZapA             Cell division protein ZapA
       0.56    9.7   9.3       0.17   11.4   4.8    2.1  2  MscS_porin       Mechanosensitive ion channel porin domain
          3    8.0  14.4        7.5    6.7   0.0    3.3  3  ATG16            Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.011        25       6      56 ..      10      59 ..       8      62 .. 0.68
   2 !  158.8   1.5   4.7e-50   1.1e-46       1     135 []      61     246 ..      61     246 .. 0.97
   3 !   30.7   0.0   1.7e-10   3.8e-07      46     125 ..     251     324 ..     247     326 .. 0.91
   4 !   23.1   0.0   3.8e-08   8.4e-05      44      99 ..     342     397 ..     338     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
     DUF2408  6 pelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkies 56
                ++l p + +L ++r  L   + + k++  + ++ ++ +l+e ++ L+k+++
  CDO73253.1 10 SDLAPFHRRLTELRNILQHDMESGKHP-PAMTKLLERQLNECENLLRKLQD 59
                578888888888876665555555554.66677788888888888888775 PP

  == domain 2  score: 158.8 bits;  conditional E-value: 4.7e-50
     DUF2408   1 leelspelepiyekLvsirrsLlslaakskaeeakesee.......................................................vkeel 44 
                 l++lspel pi+e+Lv+irr+L++laa+++a+e + s++                                                       vk+el
  CDO73253.1  61 LAVLSPELIPIHERLVNIRRQLVALAARETAREVAYSNAysakledlkakrsasnteseaseadsktptrestpkpdghrdkdgresrdgkelrVKAEL 159
                 689*****************************9998888************************************************************ PP

     DUF2408  45 kelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgeekkvasslqpiYdrLleikttLenLllTrrWtLRE 135
                 k+++eeL+ki+skr++ gkF  ++g + v+++qav+++Ll++cf++v++++aqd e+k+vassl+piYdrL+ei+++Le+L+lT+rW+LRE
  CDO73253.1 160 KPIQEELRKIDSKRVD-GKF-LGPG-GTVPASQAVCSSLLEECFEIVQEIRAQD-ESKNVASSLRPIYDRLSEIRKELEQLVLTHRWSLRE 246
                 ****************.***.6666.79*************************7.88*********************************9 PP

  == domain 3  score: 30.7 bits;  conditional E-value: 1.7e-10
     DUF2408  46 elkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgeekkvasslqpiYdrLleikttLenL 125
                 +++ +L++i++ r++ gkF+  eg    ++gq vl  Ll++c+ l+  l ++   ++ v+++l pi ++L+++k+ L+++
  CDO73253.1 251 NYSLSLQEIDKMRVD-GKFVDAEG--NRPEGQYVLLYLLRRCYGLIYRLLSS---SEPVSEELMPIANKLSTVKKCLNEV 324
                 66778**********.***99998..89**********************99...579*****************99876 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 3.8e-08
     DUF2408  44 lkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqd...g 99 
                 + +++  L++i+s r++ gkF+  +g   v++gq ++   l++c++l+e lk++    +
  CDO73253.1 342 VVKYQLALHQIDSMRKD-GKFVGIDG--TVPEGQGIVMAHLNECHELLEMLKESMddaE 397
                 5578889**********.***88887..9**********************99873332 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3     0.006        14      34      76 ..      45      86 ..      38      92 .. 0.71
   2 ?    5.7   0.1    0.0089        20      29      75 ..     189     236 ..     184     239 .. 0.76
   3 ?    0.6   0.0      0.34   7.7e+02      51      75 ..     302     324 ..     290     326 .. 0.78
   4 ?   -2.6   0.0       3.5   7.9e+03       6      18 ..     384     396 ..     377     402 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.006
  Snapin_Pallidin 34 eqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmssln 76
                      ql++  + L++l++     + p+l + +++Lvni++++ +l 
       CDO73253.1 45 RQLNECENLLRKLQDSLA-VLSPELIPIHERLVNIRRQLVALA 86
                     455555555555555555.555999999********9998876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0089
  Snapin_Pallidin  29 QeeLleqldrlnekLkeleeaqe.aevlpdlkeyakKLvnikkrmssl 75 
                      Q   ++ l++  e ++e++  +e ++v + l++  ++L++i+k++++l
       CDO73253.1 189 QAVCSSLLEECFEIVQEIRAQDEsKNVASSLRPIYDRLSEIRKELEQL 236
                      55555555555556667777777778******************9876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.34
  Snapin_Pallidin  51 eaevlpdlkeyakKLvnikkrmssl 75 
                      +  v ++l++ a+KL+++kk ++++
       CDO73253.1 302 P--VSEELMPIANKLSTVKKCLNEV 324
                      4..6688999999999999987766 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.5
  Snapin_Pallidin   6 gllellepkldel 18 
                      +lle+l+ ++d+ 
       CDO73253.1 384 ELLEMLKESMDDA 396
                      3444444444443 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   6.1e-05      0.14     108     208 ..      78     204 ..      70     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.1e-05
     DUF4407 108 Idaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.gtgttgvaGkgpaakekkaqldaaqaelaelkak 205
                 I+++l + +++e+ + +  + +a++a+l++l+a+++a ++e +a ea+ ++ ++e + + dg + ++g  +  ++g++ +  ka+l+ +q+el ++++k
  CDO73253.1  78 IRRQLVALAARET-AREVAYSNAYSAKLEDLKAKRSASNTESEASEADSKTPTRESTPKPDGHRdKDG--RESRDGKELRV-KAELKPIQEELRKIDSK 172
                 5555555555553.344677778**************************************9886555..45677777777.88999999999999998 PP

     DUF4407 206 ld.............................a 208
                 +                              +
  CDO73253.1 173 RVdgkflgpggtvpasqavcsslleecfeivQ 204
                 65777777777777644444444444444430 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.9    0.0001      0.23      34     123 ..      77     168 ..      42     180 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
        Use1  34 aleemleeLkkesskpskevlkeYsekveaLkllleaeklssteekalanqllapgeeskeekeeskereeas....kelrqkekak.yqkelrk 123
                  ++ +l +L++ ++  + ++ + Ys k+e Lk++  a++ +s  e   a+ + ++  es+++++ +++++ +     kelr k++ k  q+elrk
  CDO73253.1  77 NIRRQLVALAARETAREVAYSNAYSAKLEDLKAKRSASNTES--EASEADSKTPTR-ESTPKPDGHRDKDGREsrdgKELRVKAELKpIQEELRK 168
                 5688999****************************9999993..333333333333.23333332222221112233677666554424555565 PP

>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00023      0.51      36      83 ..      18      65 ..      10     107 .. 0.76
   2 ?    0.5   0.1      0.22   4.9e+02      70      93 ..     214     237 ..     187     259 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
        CK2S 36 qlqalqnvklygtplrdfpdlqerLrekqlealeevlakLrekleelq 83
                +l  l n    + +  ++p  +++L+e+ql++ e++l+kL++ l+ l 
  CDO73253.1 18 RLTELRNILQHDMESGKHPPAMTKLLERQLNECENLLRKLQDSLAVLS 65
                555566655566667899************************998664 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
        CK2S  70 evlakLrekleelqkvrdsleklv 93 
                 +v  +Lr   ++l ++r++le+lv
  CDO73253.1 214 NVASSLRPIYDRLSEIRKELEQLV 237
                 344456666666666666666666 PP

>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   2.4       2.5   5.7e+03      61      72 ..     107     118 ..      40     170 .. 0.65
   2 ?   -2.8   0.1       4.1   9.2e+03      65      85 ..     210     230 ..     195     236 .. 0.43
   3 ?   11.3   0.0   0.00016      0.37      43      75 ..     368     400 ..     348     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
        ZapA  61 lklkkraeelea 72 
                 lk+k++a++ e+
  CDO73253.1 107 LKAKRSASNTES 118
                 244444444444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.1
        ZapA  65 kraeeleaeleelaerleela 85 
                 +++++  + l  + +rl+e++
  CDO73253.1 210 DESKNVASSLRPIYDRLSEIR 230
                 333333332222223333333 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00016
        ZapA  43 lseerllvmaaLnladellklkkraeeleaele 75 
                 ++e +  vma Ln ++ell++ k++ ++ +e e
  CDO73253.1 368 VPEGQGIVMAHLNECHELLEMLKESMDDAEEEE 400
                 5666889**************999877776654 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.8   7.7e-05      0.17      97     167 ..      43     113 ..      38     126 .. 0.86
   2 ?   -0.1   0.1      0.26   5.7e+02     104     139 ..     215     236 ..     203     260 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.7e-05
  MscS_porin  97 lqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqiee 167
                 l++ql++ +++l++lq++++ +  +l    +rl  ir++L ++aa+++a + a  +a+ a+l+ l+a+ + 
  CDO73253.1  43 LERQLNECENLLRKLQDSLAVLSPELIPIHERLVNIRRQLVALAARETAREVAYSNAYSAKLEDLKAKRSA 113
                 789*************************************9999999988888888888888888887554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.26
  MscS_porin 104 lnsqlvelqtrperaqqqltearqrlqeirnrLnst 139
                   s+l+                + rl+eir++L+++
  CDO73253.1 215 VASSLR--------------PIYDRLSEIRKELEQL 236
                 333333..............3334444444444444 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.033        73     140     174 ..      41      75 ..       9      81 .. 0.77
   2 ?    2.2   6.2     0.081   1.8e+02       3      92 ..      79     168 ..      77     175 .. 0.52
   3 ?    6.7   0.0    0.0033       7.5       1      41 [.     201     240 ..     201     324 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.033
       ATG16 140 kdreeelrekeklvqdlqDElsaLqlqlnqaEekl 174
                 k +e +l+e e+l+ +lqD l+ L  +l  + e+l
  CDO73253.1  41 KLLERQLNECENLLRKLQDSLAVLSPELIPIHERL 75 
                 55778888888888888888888887777666665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.081
       ATG16   3 laqLreRdarqekafaeliqaynrLldrtsaleaenaklekaaasaks.sksskksakekeasasqsnskqsakiqsleqklaqlreelae 92 
                 ++qL +  ar+++   ++ +ay+  l+  +a ++ + +  ++a++a s +++ +++ k +  + ++  ++++ k    +++l+ ++eel +
  CDO73253.1  79 RRQLVALAARETAREVAYSNAYSAKLEDLKAKRSASNTE-SEASEADSkTPTRESTPKPDGHRDKDGRESRDGKELRVKAELKPIQEELRK 168
                 566666666666666777778877666665554443333.333333332222222222222222224555666666777777777777765 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0033
       ATG16   1 eilaqLreRdarqekafaeliqaynrLldrtsaleaenakl 41 
                 ei++++r++d+  +++ ++l   y rL +  ++le+   ++
  CDO73253.1 201 EIVQEIRAQDES-KNVASSLRPIYDRLSEIRKELEQLVLTH 240
                 799********8.*********************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      813  (0.0453455); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 2783.93
//
Query:       CDO73254.1  [L=205]
Description: hypothetical protein BN946_scf185008.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-49  165.6  35.8    9.5e-49  165.2  35.8    1.1  1  Tropomyosin_1    Tropomyosin like
    2.9e-12   46.5  34.5    1.5e-05   24.5   5.5    3.1  3  Tropomyosin      Tropomyosin
    0.00011   21.7  27.9      0.011   15.1  14.4    2.1  2  DUF3450          Protein of unknown function (DUF3450)
    0.00051   20.3  21.9    0.00051   20.3  21.9    2.1  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
    0.00069   20.0  16.4    0.00069   20.0  16.4    2.2  2  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
    0.00076   19.9   7.1    0.00076   19.9   7.1    4.0  2  KELK             KELK-motif containing domain of MRCK Ser/Thr
     0.0013   18.8  39.0      0.019   15.0  14.7    3.3  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
     0.0019   18.7  42.1      0.088   13.3  26.5    2.2  2  APG6_N           Apg6 coiled-coil region
     0.0025   17.8  36.0       0.07   13.2  16.3    3.0  3  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
     0.0027   17.8  39.0       0.26   11.4  16.8    2.7  2  DHR10            Designed helical repeat protein 10 domain
     0.0038   16.6  35.0      0.035   13.4  10.5    3.1  3  GAS              Growth-arrest specific micro-tubule binding
     0.0068   14.7  22.3     0.0086   14.3  22.3    1.2  1  FPP              Filament-like plant protein, long coiled-coi
     0.0087   14.3  23.5      0.011   13.9  23.5    1.1  1  HOOK             HOOK protein
  ------ inclusion threshold ------
      0.011   16.2  37.1      0.066   13.6  12.9    2.4  2  DUF4200          Domain of unknown function (DUF4200)
      0.012   14.5  28.9      0.019   13.8  28.9    1.2  1  CALCOCO1         Calcium binding and coiled-coil domain (CALC
      0.016   15.6  25.0       0.28   11.6   8.5    2.3  2  HrpB7            Bacterial type III secretion protein (HrpB7)
       0.02   14.9  32.3       0.17   12.0  10.3    3.4  3  BRE1             BRE1 E3 ubiquitin ligase
      0.021   15.0  32.6       0.06   13.5  15.7    2.1  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
      0.024   13.8   2.0      0.024   13.8   2.0    3.0  3  APG17            Autophagy protein Apg17
      0.025   14.6  32.0        0.6   10.2   6.9    3.4  4  ADIP             Afadin- and alpha -actinin-Binding
      0.029   13.8  23.9       0.39   10.0  24.6    2.1  2  DUF4407          Domain of unknown function (DUF4407)
      0.033   14.2   3.5      0.033   14.2   3.5    2.5  3  Laminin_II       Laminin Domain II
      0.052   13.0  30.2      0.072   12.6  30.2    1.1  1  HMMR_N           Hyaluronan mediated motility receptor N-term
      0.058   12.8  14.6       0.34   10.3  14.7    2.0  2  FliD_C           Flagellar hook-associated protein 2 C-termin
      0.076   13.2  31.9      0.032   14.4   9.9    3.1  3  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
       0.12   12.5  16.4       0.42   10.7   4.6    2.4  2  DUF1664          Protein of unknown function (DUF1664)
       0.12   11.3  34.8       0.18   10.6  13.4    2.1  2  Spc7             Spc7 kinetochore protein
       0.12   12.2  30.4       0.89    9.3  12.2    2.1  2  DUF724           Protein of unknown function (DUF724)
       0.19    9.8  28.1       0.02   13.1  10.7    2.1  2  EzrA             Septation ring formation regulator, EzrA
        0.2   11.9  31.4       0.44   10.8  13.8    2.5  2  FliJ             Flagellar FliJ protein
       0.23   11.9  29.0      0.085   13.3  25.2    1.8  2  Fez1             Fez1
       0.23   11.6  25.9       0.85    9.8   8.0    2.3  2  Uds1             Up-regulated During Septation
       0.27   10.2  24.8        2.2    7.2  11.6    2.1  2  IFT57            Intra-flagellar transport protein 57
       0.31   10.8  40.1        8.1    6.2  40.0    2.1  1  ERM              Ezrin/radixin/moesin family
       0.31   11.4  16.3        0.2   12.0  11.3    2.3  2  Syntaxin_2       Syntaxin-like protein
       0.32   11.1   6.9        1.2    9.3   6.7    2.0  1  Flagellin_N      Bacterial flagellin N-terminal helical regio
       0.38    9.2   9.9       0.45    9.0   9.9    1.1  1  FUSC             Fusaric acid resistance protein family
       0.39   10.3  33.3        1.9    8.0   9.8    2.2  2  PspA_IM30        PspA/IM30 family
       0.45   10.7  18.2        2.2    8.4   4.7    2.5  2  Fib_alpha        Fibrinogen alpha/beta chain family
       0.45   10.8  35.5        1.1    9.5  17.6    2.4  2  OmpH             Outer membrane protein (OmpH-like)
       0.47   10.3  14.9      0.028   14.3   3.5    2.8  3  Sec34            Sec34-like family
        0.5   11.3  27.5        2.2    9.2  10.7    2.3  2  PRKG1_interact   cGMP-dependent protein kinase interacting do
       0.61    9.9  15.9        1.9    8.4   4.5    3.1  3  TRAF_BIRC3_bd    TNF receptor-associated factor BIRC3 binding
       0.61   10.7  28.1        4.6    7.9   3.4    3.6  3  BST2             Bone marrow stromal antigen 2
       0.77   10.3   9.2        4.7    7.8   0.5    3.4  3  NPV_P10          Nucleopolyhedrovirus P10 protein
        0.8    9.9  35.5        2.5    8.3  14.2    2.4  2  ATG16            Autophagy protein 16 (ATG16)
       0.81    8.5  30.1          3    6.6  30.1    1.8  1  DUF812           Protein of unknown function (DUF812)
       0.85    9.3  27.9        2.1    8.1   9.6    2.9  2  DUF4201          Domain of unknown function (DUF4201)
       0.91    9.6  11.0       0.17   12.0   5.6    2.1  2  SurA_N           SurA N-terminal domain
          1    9.7  17.6        4.6    7.5   4.2    3.8  3  WXG100           Proteins of 100 residues with WXG
        1.1    7.8  25.4        3.2    6.3  25.4    1.6  1  AAA_13           AAA domain
        1.2    9.4  30.5       0.74   10.1  17.1    3.1  3  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
        1.3    9.6  13.4        8.9    6.9   3.5    4.0  3  HisKA_3          Histidine kinase
        1.4    9.5  18.5        6.1    7.5   1.1    3.3  3  DUF883           Bacterial protein of unknown function (DUF88
        1.4    8.6  15.7         35    4.1   3.2    3.4  2  Lectin_N         Hepatic lectin, N-terminal domain
        1.5    9.1  22.6         14    6.0  15.0    3.4  1  DUF5082          Domain of unknown function (DUF5082)
        1.5    9.0   8.5       0.58   10.3   3.1    2.5  2  HHV-5_US34A      Herpesvirus US34A protein family
        1.5    6.2  31.6        3.2    5.2  31.6    1.4  1  DUF3584          Protein of unknown function (DUF3584)
        1.5    8.4  35.4        2.8    7.6  14.1    2.3  2  Lebercilin       Ciliary protein causing Leber congenital ama
        1.6    8.9  28.8        2.2    8.5   6.4    4.2  3  Cep57_CLD_2      Centrosome localisation domain of PPC89
        1.7    9.1   7.9         16    6.0   7.9    2.2  1  DUF702           Domain of unknown function (DUF702)
        1.7    8.6  37.8        6.3    6.8  14.9    2.4  2  YscO             Type III secretion protein YscO
        1.9    8.7  28.5         29    4.9  27.0    2.8  2  Med21            Subunit 21 of Mediator complex
          2    8.8  22.1        2.7    8.4   4.8    3.5  4  KxDL             Uncharacterized conserved protein
        2.2    7.2   6.8        2.8    6.9   6.8    1.1  1  ArAE_2_N         Putative ER transporter, 6TM, N-terminal
        2.5    8.5  24.0        6.4    7.2  18.8    2.4  2  T3SSipB          Type III cell invasion protein SipB
        2.7    8.7  10.8          3    8.6   0.2    2.7  3  DUF573           Protein of unknown function, DUF573
        2.8    8.0  38.1        1.3    9.0  19.2    3.4  3  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
        2.9    8.0  27.3       0.62   10.2   5.1    4.1  4  Swi5             Swi5
        2.9    8.2  29.9        8.3    6.8  11.2    2.8  2  DUF4164          Domain of unknown function (DUF4164)
        4.8    6.7  21.6         24    4.4  21.6    1.8  1  Exonuc_VII_L     Exonuclease VII, large subunit
        5.7    5.9  26.2      2e+03   -2.4  26.2    2.1  1  Atg14            Vacuolar sorting 38 and autophagy-related su
          6    7.2  24.0          3    8.2   8.7    3.4  3  BLOC1_2          Biogenesis of lysosome-related organelles co
          6    5.6  24.4       0.61    8.9  10.5    2.0  2  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
        6.2    6.4  28.1         14    5.2  28.1    2.0  1  DUF4795          Domain of unknown function (DUF4795)
        7.1    7.2  21.4          2    8.9   8.7    2.9  3  DUF16            Protein of unknown function DUF16
        8.2    6.0  17.8          1    8.9   4.6    2.7  4  Fzo_mitofusin    fzo-like conserved region
        9.4    5.9  29.4        3.9    7.1  11.0    2.1  2  SHE3             SWI5-dependent HO expression protein 3
        9.8    6.9  23.7        3.8    8.2   6.1    3.0  3  DUF2203          Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2  35.8   4.2e-51   9.5e-49       1     142 [.      51     192 ..      51     193 .. 0.99

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 4.2e-51
  Tropomyosin_1   1 klnsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkL 96 
                    +l+sL++ea++a+++aee+e+k+K++eq  lekeqei+sL++k++ l+ e+ek+e+k+ e k+++e++e+ kt ne l+rkiqlLEeel+ ++k+L
     CDO73254.1  51 RLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNL 146
                    699********************************************************************************************* PP

  Tropomyosin_1  97 kettekLretdvkaeelERkvkaLeqerdewekkyeeleekykeak 142
                    k++++kLr++dvkae++ER+v++Leqerd+wekkyee++eky+e+k
     CDO73254.1 147 KDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESK 192
                    ********************************************99 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  13.8   5.3e-06    0.0012       2      73 ..      51     124 ..      50     126 .. 0.87
   2 !   24.5   5.5   6.7e-08   1.5e-05      23      74 ..     110     161 ..     108     163 .. 0.95
   3 !   22.1   6.3   3.5e-07     8e-05     183     233 ..     151     201 ..     150     205 .] 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.3e-06
  Tropomyosin   2 klkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLe..eaekaa 73 
                  +l++++ e+d+a  r+e+a++k ++ e+   + e+E a+ln +++ l+ ele++e +++e +++ e  e +k+a
   CDO73254.1  51 RLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEdgEQSKTA 124
                  899*******************************************************9866665511445555 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 6.7e-08
  Tropomyosin  23 kleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaad 74 
                  +l+++++  e+ ++  + l+r+iqlleeel+ +e++l++a+ kL ++  +a+
   CDO73254.1 110 ELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAE 161
                  89999999***************************************99987 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 3.5e-07
  Tropomyosin 183 ekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqtlae 233
                  +kL++   +ae+ Er+v++Le+e d+ e++ e+++eky++ ++eLd+ +  
   CDO73254.1 151 DKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSS 201
                  79********************************************87665 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   5.6    0.0003     0.069      36      88 ..      42      94 ..      35     102 .. 0.90
   2 !   15.1  14.4   4.8e-05     0.011      16     110 ..     109     203 ..     101     205 .] 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0003
     DUF3450 36 qkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqi 88
                 + ++k+++  q+l ae  ++ +++e++e++n+++e+l+ + eqeiasl+ + 
  CDO73254.1 42 TSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKV 94
                56789999*****************************************9876 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.8e-05
     DUF3450  16 atldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLe 110
                 a+l++ ++ +e++ +a +  q+ki+ l++e +  +++++++ ++l + +v+ e+ er+v+ +eqe+++ e++ ee++e  re +  l+++++++e
  CDO73254.1 109 AELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSME 203
                 67788889999******************************************************************999999999999998887 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.3     0.084        19      51     118 ..      44     114 ..      39     117 .. 0.61
   2 !   20.3  21.9   2.3e-06   0.00051      48     153 ..      97     201 ..      89     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.084
  Jnk-SapK_ap_N  51 eleelreeleqLeteyerekelrkrae...eeleeiedqweeerkelqekveqleeenrelelkaknaadq 118
                    ++e+ +e l++L+ e +   +  ++ae   +++e++  + e+e   l+ kv+ l++e ++ e+k+ +++ q
     CDO73254.1  44 TMEKIKERLQSLRAEADSAVARAEEAEaknKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQ 114
                    55666666666666655544444444433355555555666667778888888888888888887777665 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.3e-06
  Jnk-SapK_ap_N  48 eeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretel 143
                     ++ele+ ++++ +L+ + e+   ++k a+e l+++ + +eee  + ++ +++  ++ r++++ka+ ++ q++rle++ ++++k+y++++e+++e 
     CDO73254.1  97 LDTELEKAEAKVAELKAQNEDGE-QSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRES 191
                    5799*************888776.566666677777777777777788888888888899999999*****************************9 PP

  Jnk-SapK_ap_N 144 lkklkelver 153
                     ++l elv +
     CDO73254.1 192 KRELDELVSS 201
                    9999999875 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  16.1      0.14        32       4      76 ..      46     116 ..      38     121 .. 0.58
   2 !   20.0  16.4     3e-06   0.00069       5      85 ..     120     198 ..     116     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.14
  Uso1_p115_C   4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekek 76 
                  ++++++ +sl+ e+ ++ a++++++ + ++ eq   + + e++  +l+ +++ l  elek++a+++e k +++
   CDO73254.1  46 EKIKERLQSLRAEADSAVARAEEAEAKNKKYEQL--LLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNE 116
                  3444444555555555555555555444444444..6666666666666666666688888888888776654 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3e-06
  Uso1_p115_C   5 eleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDL 85 
                  ++++ ++ l++  + l+ el++++k+l+++  k  + + + +a++ e ++ +le+e ++ +++++e++ek++e++ Eld+L
   CDO73254.1 120 QSKTANEGLQRKIQLLEEELDAAEKNLKDAMDK--LRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                  556666779************************..99999****************************************9 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   1.9    0.0042      0.95       5      33 ..     128     156 ..     125     159 .. 0.91
   2 !   19.9   7.1   3.3e-06   0.00076       4      40 ..     162     198 ..     159     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0042
        KELK   5 LekqlrllkqEkeelqkelaeaqErlksq 33 
                 L+++++ll++E + ++k+l++a+++l++ 
  CDO73254.1 128 LQRKIQLLEEELDAAEKNLKDAMDKLRQV 156
                 899***********************986 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.3e-06
        KELK   4 eLekqlrllkqEkeelqkelaeaqErlksqkkeLkda 40 
                 ++e+q+  l+qE+++ +k+++eaqE+++++k+eL + 
  CDO73254.1 162 HFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 78********************************875 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  14.7   8.3e-05     0.019      57     120 ..      50     116 ..      39     117 .. 0.88
   2 ?    5.6  16.5      0.07        16      16      93 ..     124     201 ..     119     204 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.3e-05
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleesee...sweeqkeelekelselekriedlneqNk 120
                 + lq+lr+e++++ a+++e++a++++ ++ l e+e+   s++ + + l++el+++e+++ +l++qN+
  CDO73254.1  50 ERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQeiaSLNHKVSILDTELEKAEAKVAELKAQNE 116
                 579***************************99999723356778889*******************5 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.07
  TPR_MLP1_2  16 ekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleesees 93 
                  +e +++k+q l+e+l + ++ +k+a +k  +  vk +   +++++l +e ++ +++++e++++  + k el+e  +s
  CDO73254.1 124 ANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSS 201
                 444455555555555555555555555555555555555555555555555555555555555555555555554444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   7.9    0.0015      0.33      44      96 ..      29      92 ..       7      95 .. 0.79
   2 !   13.3  26.5   0.00039     0.088      12     118 ..      95     201 ..      90     205 .] 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0015
      APG6_N 44 k...........qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealee 96
                              + +e+++e+l+ l++e +++++  +e+e+++++ e+ l + e+e + l++
  CDO73254.1 29 PpfhppthlrttFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNH 92
                055555555555567889*****************************************99986 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00039
      APG6_N  12 eeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelql 110
                 + ld++le+ae++  ++++  +  +++k+ +e  + +++ leeel++ ek  ++++ +L++++ + e  e+++  le+e ++ e++ e+  ++y+e ++
  CDO73254.1  95 SILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKR 193
                 57889999999999999999999998888877799999************************************************************9 PP

      APG6_N 111 elleleee 118
                 el el   
  CDO73254.1 194 ELDELVSS 201
                 99998665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2       2.3   5.2e+02      58      74 ..      42      58 ..      36      70 .. 0.62
   2 !   13.2  16.3   0.00031      0.07       2      76 ..      70     147 ..      69     150 .. 0.90
   3 !   12.6   9.4   0.00047      0.11       2      63 ..     143     204 ..     142     205 .] 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 2.3
  CENP-F_leu_zip 58 keeieelaeelreleld 74
                     + +e+++e+l+ l+++
      CDO73254.1 42 TSTMEKIKERLQSLRAE 58
                    55566666666666555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00031
  CENP-F_leu_zip   2 ekkklhvlekLKeserkadsLkdkvenLerelemseenqekvilea...EtskaevetlkeeieelaeelreleldLv 76 
                     e k+++ ++ L e e++ +sL+ kv  L+ ele +e++  +++ +    E+sk + e+l+ +i+ l+eel   e +L+
      CDO73254.1  70 EAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNedgEQSKTANEGLQRKIQLLEEELDAAEKNLK 147
                     679999*******************************999998876222689*******************9999987 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00047
  CENP-F_leu_zip   2 ekkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeiee 63 
                     ek  + + +kL+++  ka++++ +v +Le+e  + e++ e++     +sk e+ +l + +e 
      CDO73254.1 143 EKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSMEG 204
                     67788999************************************************999886 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4  16.8    0.0011      0.26      36     106 ..      50     120 ..      35     130 .. 0.85
   2 !   10.5  15.3    0.0022      0.49      50     109 ..     137     196 ..     128     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0011
       DHR10  36 rsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekre 106
                 +++  l  e+ + +a+ eea++k k+ ++ l eke+e + l++k + l   le+ae k + l+ q e+ ++
  CDO73254.1  50 ERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQ 120
                 4455566788999****************************************************998665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0022
       DHR10  50 akleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaak 109
                 ++l+ a+k+lk+++d+l +   +++  er+ +rl++  +++e+k+e ++e+ +e +++ +
  CDO73254.1 137 EELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                 678999*******************************************99999888766 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.9     0.058        13      28      77 ..      45      94 ..      42      96 .. 0.88
   2 !   13.4  10.5   0.00016     0.035      45     106 ..      83     144 ..      82     148 .. 0.92
   3 !   12.0   9.1   0.00043     0.097      86     138 ..     138     190 ..     137     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.058
         GAS 28 IkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkql 77
                 ++ Ke ++ l+++++++  + +e++++nk++++ L + e+e++ L++++
  CDO73254.1 45 MEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKV 94
                56789999999999999999999999999999999999999999999875 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00016
         GAS  45 nekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkw 106
                 +e+e++ ++++ + l  +L+kae++v+eL++q ++ e+ k + + l+++++ le+el + + 
  CDO73254.1  83 KEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEK 144
                 68999999999*********************************************998876 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00043
         GAS  86 slknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqq 138
                 +l++++++lk++ ++l+++ +++e  e +++++e+erd+++kk+e+a +++++
  CDO73254.1 138 ELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRE 190
                 688999****************************************9988765 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3  22.3   3.8e-05    0.0086     688     830 ..      36     182 ..       8     201 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-05
         FPP 688 eenkllkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrate...leaelnelkqkiea 783
                 + + + +  +e++k + + l +e  sa ++ e++ a+ ++ Eqll e ++e++sl++  s+++t+l++ +    +l  + ++    ++  + l++ki+ 
  CDO73254.1  36 HLRTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDgeqSKTANEGLQRKIQL 134
                 445555666777777777788888888888888888888888888888888888888888888888888888888888776511134445568899999 PP

         FPP 784 LeveLeeekksheeleakckelqeqlervekkevs.kssaeeedkklk 830
                 Le+eL+  +k+ ++++ k ++++ + e  e++ +  +++ ++ +kk +
  CDO73254.1 135 LEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRlEQERDQWEKKYE 182
                 999999999999999999999999999998665553444444454444 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  23.5   4.8e-05     0.011     452     610 ..      46     196 ..       9     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.8e-05
        HOOK 452 aevreklirLqhENKmLklkqegseeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevq 550
                  +++e+l+ L++E      + e+  e k ++ ++ll ++++++ +L+++       +++ ea+        +e ++++ed  ++k + e ++ k++ ++
  CDO73254.1  46 EKIKERLQSLRAEADSAVARAEEA-EAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAK-------VAELKAQNEDGEQSKTANEGLQRKIQLLE 136
                 467888888888887775555555.66666777777777777777765555555555555555.......55555556665556666666666677777 PP

        HOOK 551 eelqkkkeqleelepklssnkqkieeleeaLkkkdedlkameerYkkyveKAksViktLd 610
                 eel   ++ l +   kl++   k e+ e + ++ +++  + e++Y +  eK ++  + Ld
  CDO73254.1 137 EELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                 777777777777777777777888888888888888888888888888888877777766 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  12.9   0.00029     0.066      39     107 ..      44     112 ..      38     116 .. 0.92
   2 ?    7.9  16.8     0.017       3.8      19      90 ..     129     203 ..     113     205 .] 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00029
     DUF4200  39 keqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                 + ++++e+l+ +     +  a+ ++a+ k ++ ++l  eke+ei+ l+++++ l +e+ek e+k++e+k
  CDO73254.1  44 TMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELK 112
                 56899999999999999999999********************************************98 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.017
     DUF4200  19 keeiqrleealkqreeelekkeqelee...dllkfdkflkendakraralkkaeeerklkkekeaeikklkaeie 90 
                 + +iq lee+l+ +e++l+++  +l++   +++ f++ +   +++r + +kk+ee +++ +e ++e+ +l +++e
  CDO73254.1 129 QRKIQLLEEELDAAEKNLKDAMDKLRQvdvKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSME 203
                 456777888888888888888876665433678888888888999999999999999999999999888877776 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  28.9   8.4e-05     0.019      89     247 ..      41     200 ..      34     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.4e-05
    CALCOCO1  89 lkesrekveeleekqkelerlseelaeeksalleakeesearirELEeDiktltqralekEteLeRlkerakkalaqrkeeeaer...kqlqakleqse 184
                  +++ e   +++e+ + l++  ++  ++ +   +++++ e+ + E E++i++l +++   +teLe+   ++  + aq  + e+ +   + lq k++  e
  CDO73254.1  41 FTSTME---KIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKtanEGLQRKIQLLE 136
                 344444...444444444444555555555556677788999******************************9999999877665222679******** PP

    CALCOCO1 185 eelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeae.nEallkelrslqerla 247
                 eel    k+l+++ ++l + d ++ + + ++t+l+q+ ++ ++k  e +E+ ++  r l e++ 
  CDO73254.1 137 EELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEaQEKYRESKRELDELVS 200
                 ************************************9999888865525777777777776654 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.5    0.0012      0.28      74     139 ..      52     117 ..      40     127 .. 0.88
   2 ?    9.4   9.3    0.0056       1.3      84     145 ..     128     189 ..     120     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0012
       HrpB7  74 ylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraaer 139
                 ++++ra  d + +r ++aea+ ++ +q l ++e+++a  + k++ +d ++++ +++++ l+++ e 
  CDO73254.1  52 LQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNED 117
                 66788888999*************************************************988765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0056
       HrpB7  84 legrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraaeraredaa 145
                 l+ +++ +e+el aa+++l++a d++++++ k    ++q+ + ++  ++ ++++e+a+e+  
  CDO73254.1 128 LQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYR 189
                 67788899999999999999999999999999999999998888888888888888888654 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.3     0.021       4.8       7      46 ..      68     107 ..      39     109 .. 0.69
   2 ?    8.3  17.1      0.01       2.3       8      92 ..      69     153 ..      66     155 .. 0.89
   3 ?   12.0  10.3   0.00076      0.17       1      67 [.     135     201 ..     135     205 .] 0.91

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.021
        BRE1   7 klekafeelseqlskkvkeltileekklrleaekakadqk 46 
                 + e+  ++ +++l +k +e+++l  k++ l++e +ka+ k
  CDO73254.1  68 EAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAK 107
                 3466667777777777777777777777777777777766 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.01
        BRE1   8 lekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkel 92 
                  e+  ++ +++l +k +e+++l  k++ l++e +ka+ k  +++ + ++ e+   +   l  K + l e+L  +ek+++  +++l
  CDO73254.1  69 AEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKL 153
                 688999******************************************9998877777777788888888888****99988766 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00076
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkl 67 
                 l+ EL+  ek  +++ ++l++   + ++ e +++rle+e ++ ++ky +a+ + +  + el  L ++
  CDO73254.1 135 LEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSS 201
                 678***********************************************99999999998887665 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.5     0.031         7     109     181 ..      42     117 ..      19     119 .. 0.88
   2 ?   13.5  15.7   0.00026      0.06      67     144 ..     122     199 ..     113     205 .] 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.031
     UPF0242 109 eeelerlkeenqqLqekleaiae...dfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLeskVrD 181
                 ++++e+ ke+ q+L+ ++  +++   + e+  +++e+ L ek++ +  ++++++ +  +lek ++++++L ++ +D
  CDO73254.1  42 TSTMEKIKERLQSLRAEADSAVAraeEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNED 117
                 5678899999999999988877667688999999***********************************9998666 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00026
     UPF0242  67 kskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqL 144
                 k  +e  ++k++ l+e+l+  e++l+++ ++ ++   + ++ e+++ rl++e  q ++k e+++e + e+k+el+e +
  CDO73254.1 122 KTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELV 199
                 344555688888889999********************************************************9966 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   4.0      0.52   1.2e+02     258     323 ..      45      90 ..      34     117 .. 0.35
   2 ?   13.8   2.0   0.00011     0.024      63     102 ..     122     161 ..     105     164 .. 0.85
   3 ?    5.4   1.2     0.036       8.2      47      86 ..     162     201 ..     160     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS
       APG17 258 kkllsekkeeiekllsalkkaleeleevgkklpeylaifkaeeeflerweeekekieekleeleeL 323
                  + ++e+ +++++  ++ ++  ee e+ +kk+++ l                     ek +e+ +L
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLL--------------------EKEQEIASL 90 
                 2222222222222222233333333322223333333....................222222222 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00011
                 IIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-TTS CS
       APG17  63 erklekgkeefkdlikeldaanerLektlekLrktkveps 102
                 +++ e ++++++ l++eldaa ++L++ ++kLr+++v++ 
  CDO73254.1 122 KTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAE 161
                 3444999******************************975 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHH CS
       APG17  47 glkqQlkllekirkslerklekgkeefkdlikeldaaner 86 
                 + ++Q++ le+ r++ e+k+e+++e++++  +eld+  ++
  CDO73254.1 162 HFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSS 201
                 56899999*********************99999987665 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.5     0.033       7.4      73     126 ..      42      95 ..       8     103 .. 0.88
   2 ?    7.5   5.1     0.017       3.9      56      98 ..      74     116 ..      72     121 .. 0.69
   3 ?   10.2   6.9    0.0026       0.6      61     112 ..     103     154 ..      98     157 .. 0.87
   4 ?    7.2   4.1     0.022         5      56      91 ..     161     196 ..     153     203 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.033
        ADIP  73 qskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalq 126
                 +s++e+ k++l++l+ e++++ a+  ++e+k+k+ eq l ++ +e++ l+ ++ 
  CDO73254.1  42 TSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVS 95 
                 78999**********************************999999999888775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.017
        ADIP  56 eslnetirkleaeierlqskierlktqleqlerelalvqaker 98 
                 +++++ + ++e ei++l+ k++ l+t+le+ e ++a ++a+  
  CDO73254.1  74 KKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNE 116
                 5667777777778888877777777777777777776666554 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0026
        ADIP  61 tirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklk 112
                 + + + ae++ ++ + e+ kt +e l+r+++l+++++  +ek+lk++ +kl+
  CDO73254.1 103 KAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLR 154
                 5667788999999999999999*************99999999999998887 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.022
        ADIP  56 eslnetirkleaeierlqskierlktqleqlerela 91 
                 e +++++ +le e ++ ++k+e  ++++ +++rel+
  CDO73254.1 161 EHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                 445555555555555555555555555555555555 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.2     0.022       5.1     127     165 ..      37      75 ..      14      79 .. 0.76
   2 ?   10.0  24.6    0.0017      0.39     108     236 ..      48     191 ..      45     205 .] 0.60

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.022
     DUF4407 127 laaaltaelaeleaqiaalqaeidaaearldalraeaqk 165
                 l++++t++++++++++++l+ae d+a ar+++++a+ +k
  CDO73254.1  37 LRTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKK 75 
                 344499999999999999999999999999999988764 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0017
     DUF4407 108 Idaelaeeqqeeakelkeqlaaa.....ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk..gtgttgvaGkgpaakekkaqldaaqael 199
                 I+++l++ ++e+ +++ +  +a+     +++ l e e++ia+l+ +++ ++++l++++a++++   ++    +  t+ +G     +  +++ldaa+++l
  CDO73254.1  48 IKERLQSLRAEADSAVARAEEAEaknkkYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEdgEQSKTANEGLQRKIQLLEEELDAAEKNL 146
                 666666666666666655555557778866666666666666666666666666666666664433333443334567888999999************ PP

     DUF4407 200 aelkakld........atarlaalraelaeleaerakeraasqaa 236
                 +++ +kl+         + ++++l++e+++ e+++++++++ +++
  CDO73254.1 147 KDAMDKLRqvdvkaehFERQVTRLEQERDQWEKKYEEAQEKYRES 191
                 **9999999666665544444444444444444444444444444 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.3       0.1        23      10      84 ..      43     117 ..      38     133 .. 0.86
   2 ?   14.2   3.5   0.00014     0.033      30      84 ..     122     176 ..     115     179 .. 0.91
   3 ?    7.4   0.3     0.019       4.2       8      48 ..     156     196 ..     154     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.1
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84 
                 +t+++++e l+ l ++ +   + ++e++++ ++ ++++ ++ + i++ +++v+ L+ ++++ ++k+ elk ++e 
  CDO73254.1  43 STMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNED 117
                 67889999999999****************999999999******************************988765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  30 keklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84 
                 k   ++++r+++  +e++++a k ++dA ++ ++++ +a+  + ++ +l+q +++
  CDO73254.1 122 KTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQ 176
                 5566899********************************************9876 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   8 anetakevleqlaplsqnlentkeklseinrsveetnekvk 48 
                 ++ +a++ ++q++ l+q+ +++++k++e++++ +e + +++
  CDO73254.1 156 VDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                 5668899999*******************999888877665 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  30.2   0.00032     0.072     163     317 ..      44     198 ..      36     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00032
      HMMR_N 163 sleLmklr.nkleakekevsvkQedmeaklqvtqknLeeskakvaqLkeklv..slekekieekseteklleyieelsnvseqlekykldiaqleellk 258
                 ++e +k r + l a   +++++ e+ eak +  ++ L e  +++a L+ k +  ++e ek+e k    k  +++e  ++ +   e  + +i+ lee l+
  CDO73254.1  44 TMEKIKERlQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSilDTELEKAEAKVAELK--AQNEDGEQSKTANEGLQRKIQLLEEELD 140
                 56666666356888889999******************************8622556666666655544..4444433333334446************ PP

      HMMR_N 259 ekndeiesLkssLeekeqelskqvkdlnekckllekekeelvr...eeeekeqtlsaEleel 317
                 ++++++++   +L++ ++    +++  + ++  le+e+++  +   e++ek ++++ El+el
  CDO73254.1 141 AAEKNLKDAMDKLRQVDV----KAEHFERQVTRLEQERDQWEKkyeEAQEKYRESKRELDEL 198
                 ******999999988665....5666666666666555444440005555666667777776 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.6       1.4   3.3e+02     192     224 ..      41      73 ..      17      95 .. 0.61
   2 ?   10.3  14.7    0.0015      0.34     140     239 ..      95     203 ..      42     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.4
                 HHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHH CS
      FliD_C 192 lqtasknltkqikdldkkiedldkrletleerl 224
                 +++  +++++++++l  + ++   r+e+ e++ 
  CDO73254.1  41 FTSTMEKIKERLQSLRAEADSAVARAEEAEAKN 73 
                 444444555555555555555555555544432 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHTTTSS.......SXSHHHHHHHHHHHHHSTT.SHHH..........HHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHH CS
      FliD_C 140 ekLkkalkenpssveelFsgstsqektvtsdsglatrlenllksyvkssngtlq..........tasknltkqikdldkkiedldkrletleerlkkqf 228
                 + L+  l++  ++v+el +++ + e++ t ++gl  ++ +ll++ +++ +++l+          ++ +  ++q+++l+++ ++++k++e+ +e++++  
  CDO73254.1  95 SILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKI-QLLEEELDAAEKNLKdamdklrqvdVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESK 192
                 568889999999999999999888999999****9994.6777777777777777777777777*********************************** PP

                 HHHHHHHHHHH CS
      FliD_C 229 aalekavskln 239
                  +l+++vs+++
  CDO73254.1 193 RELDELVSSME 203
                 *******9995 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.3       0.4        90      31      69 ..      41      79 ..      37      82 .. 0.79
   2 ?   14.4   9.9   0.00014     0.032      19      83 ..      78     142 ..      75     152 .. 0.92
   3 ?    5.7  11.4     0.071        16      32      98 ..     129     199 ..     128     205 .] 0.60

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.4
  TMF_TATA_bd 31 lkeelerleaerdeareeivklmkeneelkelkkeleel 69
                 + +++e++++  +++r+e  + +++ ee ++++k++e+l
   CDO73254.1 41 FTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQL 79
                 567788888888888888888888888888888888887 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 0.00014
  TMF_TATA_bd  19 seirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetl 83 
                  + + ++E E+asl+ +++ l +e ++a++ +++l ++ne+ +++k+ +e l+++++ l+e+++++
   CDO73254.1  78 QLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAA 142
                  566789*****************************************************999886 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.071
  TMF_TATA_bd  32 keelerleaerdeareeivklmkeneel....kelkkeleelekeleelqeryetlLellGeksEeveELr 98 
                  +++++ le+e d+a++ + + m +  ++    ++ +++++ le+e ++ +++ye++ e + e + e +EL 
   CDO73254.1 129 QRKIQLLEEELDAAEKNLKDAMDKLRQVdvkaEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELV 199
                  55666666666666666666665554441111344556667777777777777777777777777777774 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.4     0.023       5.3      55     123 ..      39     107 ..      35     120 .. 0.61
   2 ?   10.7   4.6    0.0019      0.42      58     122 ..     122     186 ..     109     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.023
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                 ++ ++t +++++r++++ ++ d+  + ++e +++ ++ ++ l e ++++ s+++ v+ l+++le+ e+k
  CDO73254.1  39 TTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAK 107
                 445556666666666666666666666666666666666666666666666666666666666655543 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0019
     DUF1664  58 aatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 +++ + L+++i+ ++++ld+ ++  k+  +++ +v  + ++++++v+ +++   ++e+k e+ +e
  CDO73254.1 122 KTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQE 186
                 567788**********************************************9999999887665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  20.2      0.13        29     166     248 ..      42     137 ..      35     144 .. 0.43
   2 ?   10.6  13.4    0.0008      0.18     173     253 ..     122     198 ..     118     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
        Spc7 166 dellpeleeekaeleeeleklqeaaeeles..........idkeeLeelreelaelkaeieekkkelaelqeqleeleeki...eelkeqkselee 248
                 ++ +++++e+ ++l++e+++  ++aee e+           +++e+++l ++++ l++e+e+ ++++ael++q e+ e++    e l+ +++ lee
  CDO73254.1  42 TSTMEKIKERLQSLRAEADSAVARAEEAEAknkkyeqlllEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKtanEGLQRKIQLLEE 137
                 555666666666666666666665555555222211133233444444444444444444444444444444444333322000223333333344 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0008
        Spc7 173 eeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253
                 ++  + l+++++ l+e+ +      +++L+ + ++l++++++ e++++++++l++++++ e+k ee++e+++e + e+ e 
  CDO73254.1 122 KTANEGLQRKIQLLEEELDA----AEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 55667888999999884443....6789*********************************************99999875 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  12.2    0.0039      0.89      96     173 ..      44     121 ..      35     127 .. 0.90
   2 ?    9.0  10.3    0.0051       1.2     100     174 ..     128     202 ..     126     205 .] 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0039
      DUF724  96 kLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleee 173
                 ++ ++k++ ++l+ e   +  + ee+e++++k+e+ + e+e++i+ l+ +   l ++ e+a++++a+lk+++e+ e++
  CDO73254.1  44 TMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQS 121
                 566899*****************************************************************9998876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0051
      DUF724 100 lkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeel 174
                 l+ + + l+ee+ ++ek+++++ ++ r+++ + +++e+++ +le+++++  +k e+a+++  ++k e ++l  ++
  CDO73254.1 128 LQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSM 202
                 577788899**************************************************9999999988887666 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  10.4      0.19        42      75     146 ..      43     116 ..      36     127 .. 0.60
   2 ?   13.1  10.7   8.7e-05      0.02      99     174 ..     128     203 ..     119     205 .] 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.19
                 HHTHHHHHT-GG..GT--S-SHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHH CS
        EzrA  75 kklpeieellfe..aeelldkykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYr 146
                 + +++i+e+l    ae++    +  +a++k ++ e+ l e e++i++++++++ l +  ek ++++ +lk + +
  CDO73254.1  43 STMEKIKERLQSlrAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNE 116
                 45566666665411344444456666777777777777777777777777777777777777777777766544 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.7e-05
                 TTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHHH- CS
        EzrA  99 akkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsygealeelekqlenie 174
                 +++k++ leeeld +e+++k+  ++l+++  + e  + +++ l+++ ++ +kk+++ +++y e++ el++ ++ +e
  CDO73254.1 128 LQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSME 203
                 6899****************************************************************99877766 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  11.2      0.13        29       1      78 [.      46     118 ..      46     125 .. 0.82
   2 ?   10.8  13.8     0.002      0.44      14      90 ..     125     196 ..     119     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.13
        FliJ   1 deaareLaeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqveka 78 
                 ++++++L++ ++e ++a ++ ee e   ++y++ l ++      +e+  +++  s ld+++++++ ++a +++q e  
  CDO73254.1  46 EKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKE-----QEIASLNHKVSILDTELEKAEAKVAELKAQNEDG 118
                 578888999999999999999999999999988888888.....8999999999999999999999998888887765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.002
        FliJ  14 lqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerk 90 
                  +  + k++ le++++  +k+l++++      +lr++    ++ ++++++++qe +q+ek+ e+a+e++ e ++e+ 
  CDO73254.1 125 NEGLQRKIQLLEEELDAAEKNLKDAM-----DKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                 566799********************.....******************************************9975 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  25.2   0.00037     0.085      40     168 ..      45     180 ..      35     184 .. 0.59
   2 ?    9.1  13.4    0.0074       1.7      24     107 ..     118     199 ..     114     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00037
        Fez1  40 lrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.....lesdeakaqrqe....... 126
                 +  ++++l++  +e++++ +++ee +++++++e+ l +k++e   l+ kv+ l++el++   +++el++++e+ +     +e  + k            
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEqsktaNEGLQRK----Iqlleeel 139
                 444555555555555555555555555566666666666666666666666666666666666666554444433111112333333....13443444 PP

        Fez1 127 aeeleelkreverlraeLkeerqkkeeqassFeqERrtWqee 168
                   + ++lk  +++lr+ +  + ++ e+q++  eqER +W++ 
  CDO73254.1 140 DAAEKNLKDAMDKLRQ-VDVKAEHFERQVTRLEQERDQWEKK 180
                 5566778888888875.677778889*************986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0074
        Fez1  24 aevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelsels 107
                  e+++ ++e ++ k ql  l+++l++ e+++k++ ++l++ + + e+ e ++ r ++e +  ++k e+++e+ +e ++el el 
  CDO73254.1 118 GEQSKTANEGLQRKIQL--LEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELV 199
                 56777777876666555..7899*******************************************************999865 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.0    0.0037      0.85      48     116 ..      46     112 ..      35     115 .. 0.73
   2 ?    7.5  10.3     0.018       4.2      25     105 ..     120     202 ..     113     205 .] 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0037
        Uds1  48 tklrdaarsLsrlyssskksakssaarsnskssreslakaeeelaeserkvdelaselekleeraaevr 116
                  k+++  +sL++   s  ++  ++ a+ ++k+ ++ l+++e+e+a++++kv  l +elek+e + ae++
  CDO73254.1  46 EKIKERLQSLRAEADSAVAR--AEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELK 112
                 56777777777666444444..3333344455567899**************************99987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.018
        Uds1  25 elkkelkaLeerlealrkkL.aletklrdaarsLsrlyssskksak.ssaarsnskssreslakaeeelaeserkvdelasel 105
                 + k   + L+++++ l+++L a e+ l+da  +L+++ ++ +  ++   + +++  + +++ ++a+e++ es+r  del s +
  CDO73254.1 120 QSKTANEGLQRKIQLLEEELdAAEKNLKDAMDKLRQVDVKAEHFERqVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSM 202
                 55556666777777777777445677999999999999766665444222233334445567788888888888888887765 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.6    0.0097       2.2     249     336 ..      36     123 ..      32     139 .. 0.92
   2 ?    6.2   9.7     0.019       4.3     230     326 ..     122     200 ..     119     204 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0097
       IFT57 249 klhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvk 336
                 +l + ++ t+eki++r + l  + ++ ++  +ea+++ ++ ++ + + ++++ +l+++ + +++elek++ ++ e +++  Dg++  +
  CDO73254.1  36 HLRTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKT 123
                 688999****************************************************************************988555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.019
       IFT57 230 kkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergs 326
                 k+ +++++ +++ ++++l+  +++++ +++k+                  r++  + +++++++  l+++  + +++++e +e++++ k+e++e  s
  CDO73254.1 122 KTANEGLQRKIQLLEEELDAAEKNLKDAMDKL------------------RQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVS 200
                 55555555555555555555555555555555..................44444444444444444444444444444444444444444444444 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  40.0     0.035       8.1       1     132 [.      67     201 ..      41     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.035
         ERM   1 eeaerekreleerLkqlqeeaekaqeaLreseetaelLaek...arraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarlee 96 
                 eeae +++++e+ L + ++e++  +++ +    + e+ + k   ++   e+ e+ +  ++ ++++iq l+e+  + e++ ++ ++klr+++ +a+ +e+
  CDO73254.1  67 EEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKvaeLKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFER 165
                 799999999999999999999999987554444444444430004433444444444555578999999999999************************ PP

         ERM  97 eserkeeeaerLkeeleeareaeeeakekllealst 132
                 +++r e+e ++++++ eea+e+ +e k++l e++s+
  CDO73254.1 166 QVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSS 201
                 *******************************99886 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.2       1.8     4e+02      36      66 ..      46      76 ..       8     116 .. 0.45
   2 ?   12.0  11.3    0.0009       0.2       3      99 ..      99     194 ..      83     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 1.8
  Syntaxin_2 36 helieeinelikktnellkklsqldnsssds 66
                +++ e+++ l  +  + + + ++ + +++++
  CDO73254.1 46 EKIKERLQSLRAEADSAVARAEEAEAKNKKY 76
                2222222222222222222222222222222 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0009
  Syntaxin_2   3 snlqkinsnvstleklvkq.LgtkkdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekq 99 
                 ++l k   +v +l+ + ++  ++k+ +e l++k++ l ee+    k+ ++ + kl q+d + +  +   q  +L ++  +  ++++++q++y+e +++
  CDO73254.1  99 TELEKAEAKVAELKAQNEDgEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAE--HFERQVTRLEQERDQWEKKYEEAQEKYRESKRE 194
                 34444445555555555552333356999******************************9996..4445999***********************997 PP

>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.7    0.0051       1.2      42     120 ..      61     140 ..      42     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0051
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHHH CS
  Flagellin_N  42 aglaisvslrsqiaglsqlvrnnslgisrlqtaqgalselsdilqr.lkelavaasndsnsdedrqslqaelqqLtdeln 120
                  + +a++++ +++ ++ +ql  +++  i+ l    + l+   + ++  + el +++ ++++s+++ + lq+++q L +el+
   CDO73254.1  61 SAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAkVAELKAQNEDGEQSKTANEGLQRKIQLLEEELD 140
                  55778999999999999999999999999999999998766666666********************************9 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.9     0.002      0.45     159     306 ..      45     194 ..      31     205 .] 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
        FUSC 159 rarlrallrdalalaaaalageegaeareaararla....adilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaav 253
                 +++++++l++++a a +a+a++e+aea +++ ++l+    ++i+ l+  +s + +e ++  a ++ l++ + +     +   +l+r  + l +e +aa+
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLlekeQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAE 143
                 455666777777777777777777777766666665344389********************************************************9 PP

        FUSC 254 pelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllar 306
                 + l++ +++l++++    ae+ e ++++l+++ ++ ++  e++++  ++  ++
  CDO73254.1 144 KNLKDAMDKLRQVD--VKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRE 194
                 99**********63..4788888888888888777777666333333333333 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.9     0.018       4.1      60     135 ..      45     115 ..      37     133 .. 0.56
   2 ?    8.0   9.8    0.0084       1.9      26      81 ..     133     188 ..     121     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.018
   PspA_IM30  60 leeqkeqakklekkAkaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakk 135
                 +e+ ke++++l ++A +A  ++e     ea a+ k++e+ + ++e++ a ++  v  l ++le++e+k++elka+ 
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAE-----EAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQN 115
                 55666666666666666666653.....233344455555555555555555555555555555555555555543 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0084
   PspA_IM30  26 kileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkg 81 
                 ++le+++  ++++l++a+++l qv  ++  +er++ + +++  ++ekk ++A +k 
  CDO73254.1 133 QLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKY 188
                 68999******************************************999996665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.7    0.0098       2.2      57     130 ..      40     113 ..      34     118 .. 0.72
   2 ?    7.6   5.2     0.018       4.2      26      90 ..     135     199 ..     122     204 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0098
                 HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  57 lvkeikdslrekqkskkdn.dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                 + ++++++++e+ +s + + d+++ + ++e e +  ++++ + ++e++i  L   ++ ++ +++k e +++++++
  CDO73254.1  40 TFTSTMEKIKERLQSLRAEaDSAVAR-AEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKA 113
                 44555666666666665552555554.556677899999999999999999999999999999999999888776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.018
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeei 90 
                 l++     +k+l++  ++l+++  + ++ e+ v+++++   + +k++++ ++ +++s++el+e +
  CDO73254.1 135 LEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELV 199
                 33344444555555566666666666666666666666666666677767777777777777544 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.2     0.073        17      22      92 ..      39     110 ..      34     117 .. 0.71
   2 ?    9.5  17.6     0.005       1.1      16      83 ..     120     195 ..     113     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHH....HHHHHHHHHHHH CS
        OmpH  22 eqlekkfkklqaeleakekelqklqeelqkkakklekeekeqe.lqkkeqelqqkqqqka....qelqkkqqellk 92 
                 + + ++ +k+++ l+++++e ++++++ +++++   k++k+++ l +keqe+   ++ k      el+k+++++ +
  CDO73254.1  39 TTFTSTMEKIKERLQSLRAEADSAVARAEEAEA---KNKKYEQlLLEKEQEIAS-LNHKVsildTELEKAEAKVAE 110
                 566677788888888888888888888874333...567777779999999999.555555888888888877654 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS............-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e..........keekeqelqkkeqelqqkqqqkaqel 83 
                 + k+a+e l++k++ l++el+a ek+l++++++l    +   +           e+++ + +kk +e q+k+++ ++el
  CDO73254.1 120 QSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLR---QVDvKaehferqvtrLEQERDQWEKKYEEAQEKYRESKREL 195
                 56899999999999999999999999999999996...33222335444443222222224444444444444444444 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.8      0.74   1.7e+02      15      55 ..      44      84 ..      35      96 .. 0.50
   2 ?    1.3   2.8       1.2   2.8e+02      12      64 ..      76     132 ..      66     134 .. 0.70
   3 ?   14.3   3.5   0.00013     0.028       9      67 ..     129     187 ..     123     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.74
       Sec34 15 lleqtdealeqLeeleekfksvsektsslheaceqlleeqk 55
                 +e+++e l++L+   ++  + +e+ ++ +++ eqll e++
  CDO73254.1 44 TMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKE 84
                33344444444444444444445556666667777654443 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 1.2
       Sec34  12 cdell....eqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeei 64 
                 +++ll    +++ +++ +++ l ++ ++ ++k  +l+++ e+  ++++  e l+++i
  CDO73254.1  76 YEQLLlekeQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKI 132
                 444443333667778888888888888888888888888888877777777777776 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 0.00013
       Sec34   9 eeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieek 67 
                 +++++ l e++d+a+++L++  +k ++v+ k + ++++  +l +e+++ e+ +ee +ek
  CDO73254.1 129 QRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEK 187
                 567888999*********************************************99887 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.8     0.026       5.9      12      84 ..      44     116 ..      35     117 .. 0.64
   2 ?    9.2  10.7    0.0096       2.2       7      77 ..     119     192 ..     118     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.026
  PRKG1_interact  12 enerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis....eleeelkeleeLraenq 84 
                       e++k++L++l+ e +++ ++ e+++     +++k ++ll  +++e  sl++k+s    ele+   +++eL+a+n+
      CDO73254.1  44 TMEKIKERLQSLRAEADSAVARAEEAEA----KNKKYEQLLLEKEQEIASLNHKVSildtELEKAEAKVAELKAQNE 116
                     3445555555555555554444444432....44555666666888999******9776667777789999999997 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0096
  PRKG1_interact   7 eeekeenerLkreLeelekelselkseleklkqq.rqe..svskrssllelekrerrslerkiseleeelkele 77 
                     e++k+ ne L+r+++ le+el+ ++++l+ +  + rq   + ++ ++ +   ++er + e+k+ e +e+ +e +
      CDO73254.1 119 EQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKlRQVdvKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESK 192
                     688999********999999988888877766554443222333333444457889999999999877765543 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2      0.31        69      42      58 ..      81      97 ..      54      98 .. 0.73
   2 ?    8.4   4.5    0.0083       1.9      20      59 ..      94     136 ..      77     140 .. 0.81
   3 ?    7.2   1.9     0.019       4.4       5      51 ..     152     198 ..     149     205 .] 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.31
  TRAF_BIRC3_bd 42 rldqekieaLekKvrqL 58
                    + ++ i++L++Kv  L
     CDO73254.1 81 LEKEQEIASLNHKVSIL 97
                   34567899*****9755 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0083
  TRAF_BIRC3_bd  20 VsVLnrEverssttieaverqrrl.dqeki..eaLekKvrqLe 59 
                    Vs+L+ E e+ ++++++++ q++  +q k   e+L++K++ Le
     CDO73254.1  94 VSILDTELEKAEAKVAELKAQNEDgEQSKTanEGLQRKIQLLE 136
                    9*****************9998642555543389*****9998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.019
  TRAF_BIRC3_bd   5 klsaLetkvatFEnIVsVLnrEverssttieaverqrrldqekieaL 51 
                    kl + + k++ FE  V+ L++E ++ + + e+ ++  r+ ++  + L
     CDO73254.1 152 KLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                    88999************************999999999988877766 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.4      0.02       4.6      41      89 ..      39      87 ..      11      89 .. 0.93
   2 ?    5.6  11.1       0.1        23      31      87 ..      78     144 ..      74     148 .. 0.62
   3 ?    6.1  11.2     0.071        16      11      85 ..     124     198 ..     119     204 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        BST2 41 atcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaev 89
                +t  +t++++k+ L+  +a++  + a+++e + ++kk +q L ++e+e+
  CDO73254.1 39 TTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEI 87
                68899*************************************9999987 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHHHH CS
        BST2  31 eslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqe..........lqgeikkLnqkLqdaea 87 
                 + l+e+e+++a+ n+ v  L   Lek +a+  + +a+ ++          lq++i+ L+++L+ ae+
  CDO73254.1  78 QLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDgeqsktanegLQRKIQLLEEELDAAEK 144
                 67999*******************9987765544333322111111111266666666666666655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.071
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  11 aeqecrnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqda 85 
                 a++ ++ + +lLe++L  a+++l++a+++    +   +  +   ++ + +  ++++k +e q++ ++ + +L++ 
  CDO73254.1 124 ANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 444456666666666666666666666666555555555555555555555555555555555555555555544 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.5     0.021       4.7       6      39 ..      80     113 ..      77     126 .. 0.79
   2 ?    5.1   1.4      0.14        32      17      57 ..     129     166 ..     122     176 .. 0.58
   3 ?    1.7   0.1       1.6   3.7e+02      14      36 ..     154     176 ..     150     203 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.021
     NPV_P10   6 LlvIradikavddkVdalqqqvddvqenlpdvte 39 
                 Ll   ++i+ ++ kV+ l++++++ ++++ +++ 
  CDO73254.1  80 LLEKEQEIASLNHKVSILDTELEKAEAKVAELKA 113
                 5566789***************999998877443 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.14
     NPV_P10  17 ddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletk 57 
                 + k++ l++++d  ++nl+d     +kL +   + +++e +
  CDO73254.1 129 QRKIQLLEEELDAAEKNLKDA---MDKLRQVDVKAEHFERQ 166
                 567777777777777777773...34444443333333333 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 1.6
     NPV_P10  14 kavddkVdalqqqvddvqenlpd 36 
                 ++vd k +  + qv++++++  +
  CDO73254.1 154 RQVDVKAEHFERQVTRLEQERDQ 176
                 56777777777777777665444 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  14.2     0.011       2.5     108     182 ..      42     116 ..      35     117 .. 0.91
   2 ?    5.9  15.2     0.059        13      90     162 ..     118     190 ..     114     203 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.011
       ATG16 108 neelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENk 182
                 +++++k +e+l++ +++ +++ a+ ++ e k k+ e+ l eke+ +  l   +s L  +l++aE+k  +l++ N+
  CDO73254.1  42 TSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNE 116
                 6789999999999999999999999999****************************************9999997 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.059
       ATG16  90 laelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsa 162
                  +++  +++ l+ +++ l+eel++ e++lk    +l+++  + ++ e+++ ++e+e  ++ek  ++ q+ +  
  CDO73254.1 118 GEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRE 190
                 4555556666666666666666666666666666666666666666666666666666666666666655443 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  30.1     0.013         3     295     439 ..      49     197 ..       7     204 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
      DUF812 295 ktkgsrfthaeklqftke.elakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessik...qveeeleeekeeneelekevklkkktle 389
                 k++ + ++ + +  ++++ e+++k ++ e+l  ++e+e+++l+ +++ l+ ++e+ e+++++l+++ +   q + + e ++++ + le+e++ ++k l+
  CDO73254.1  49 KERLQSLRAEADSAVARAeEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEdgeQSKTANEGLQRKIQLLEEELDAAEKNLK 147
                 222222222222222222223366777888888888888888888888888888888777766665431114444555556666666666666666666 PP

      DUF812 390 llpdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelkeskse 439
                  + d   ++    + +e +  rl +  +qWek+ +   e+yre k + +e
  CDO73254.1 148 DAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDE 197
                 66666666666666677777777777788888888888888887776654 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  16.7       1.2   2.7e+02      84     175 ..      50     146 ..      39     147 .. 0.62
   2 ?    8.1   9.6    0.0092       2.1      78     135 ..     131     188 ..     120     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.2
     DUF4201  84 eklh..............mleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYdktkekveekrksvkkLrrkv 168
                 e+l+              + e+++++ ++ l eke+++a+l ++++ + +e +k++++ ++lk+q+++          ++ k   e ++ +++ L++++
  CDO73254.1  50 ERLQslraeadsavaraeEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNED---------GEQSKTANEGLQRKIQLLEEEL 139
                 44443333333333333366666666777777777777777777777777777777777777777766.........4677777777788888888887 PP

     DUF4201 169 kilemrl 175
                 + +e++l
  CDO73254.1 140 DAAEKNL 146
                 7777776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0092
     DUF4201  78 althlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqg 135
                 +++ l e l++ e++l+++ ++l++ + + ++ +++++++++erd+ +k++e+ +++ 
  CDO73254.1 131 KIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKY 188
                 4677789999999*************************************99988875 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.6   0.00073      0.17      16     100 ..      46     129 ..      42     134 .. 0.87
   2 ?    0.0   0.2       3.8   8.6e+02      14      46 ..     135     167 ..     129     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00073
      SurA_N  16 seldervkevkkqlakqgkqlPpeavLerqvlerlilekiqlqeaektgirvddeelnqaiaeiAkeNkltldqlraalaedGls 100
                 ++++er++++++++ +  +   +ea+ +++  e+l+lek q   + +  +++ d+el++a a++A+   ++ d+ +++ a++Gl+
  CDO73254.1  46 EKIKERLQSLRAEADSAVA-RAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQ 129
                 5678888888888766554.456677788889***************************************************86 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 3.8
      SurA_N  14 lqseldervkevkkqlakqgkqlPpeavLerqv 46 
                 l++eld + k++k+ + k ++   +++  erqv
  CDO73254.1 135 LEEELDAAEKNLKDAMDKLRQVDVKAEHFERQV 167
                 677888888888888887777777777777776 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3      0.24        54      56      84 ..      41      69 ..      37      78 .. 0.61
   2 ?    7.5   4.2      0.02       4.6      10      85 ..      84     157 ..      81     158 .. 0.84
   3 ?    6.2   0.3     0.054        12      50      82 ..     171     203 ..     159     205 .] 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 56 wkqaaqklvdaLeeisealkqaanafeda 84
                ++ +++k+++ L++++ + ++a ++ e+a
  CDO73254.1 41 FTSTMEKIKERLQSLRAEADSAVARAEEA 69
                34455556666666655555555555555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCT.HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  10 rqaaarfqkqaeeledelqrlkaevdalqsgWs.GaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85 
                 +q +a+++ + + l +el++ +a+v++l+++ + G+ +++ ++    +++++q l ++L+  +++lk a ++++++D
  CDO73254.1  84 EQEIASLNHKVSILDTELEKAEAKVAELKAQNEdGEQSKTANEG---LQRKIQLLEEELDAAEKNLKDAMDKLRQVD 157
                 5778888999999999************6666647777777766...5678889999******************98 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.054
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  50 qaefeewkqaaqklvdaLeeisealkqaanafe 82 
                 ++e ++w ++ ++ ++++ e  ++l++  +++e
  CDO73254.1 171 EQERDQWEKKYEEAQEKYRESKRELDELVSSME 203
                 566678899999999999999988888888887 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  25.4     0.014       3.2     276     449 ..      36     198 ..      34     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.014
      AAA_13 276 hFddefeekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakiesikklvaei 374
                 h  ++f+  +e+++++++++  + ++++++ +++ ++++++++   +ke+  a ++   + L++  ++ eaK+      +el+  +++ e+ k + + +
  CDO73254.1  36 HLRTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKV------AELKAQNEDGEQSKTANEGL 128
                 7788899999999999999999999999999999998888888888888888888888888888888888888......45666677777888888999 PP

      AAA_13 375 neliakhNekvanleeekeeakkklelhlv..eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeL 449
                 ++ i+   e  +  e++ ++a +kl++  v  e++       ++++ +le++  + ek+ +e++++ ++ + e  eL
  CDO73254.1 129 QRKIQLLEEELDAAEKNLKDAMDKLRQVDVkaEHF-------ERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 9999999999***************9965422444.......55555555555555544444444444444444444 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   3.9       1.1   2.5e+02      13      89 ..      47      79 ..      36      89 .. 0.39
   2 ?   10.1  17.1    0.0032      0.74      29     104 ..      78     153 ..      63     156 .. 0.90
   3 ?    3.1   2.7      0.49   1.1e+02      31      60 ..     167     196 ..     152     204 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 1.1
                  HHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHH CS
  Seryl_tRNA_N 13 avkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleae 89
                  ++ke+l++                                               ++a++ +a+++e  ++ k++e+ 
    CDO73254.1 47 KIKERLQS---------------------------------------------LrAEADSAVARAEEAEAKNKKYEQL 79
                  22222222.............................................2233333333333333333333333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0032
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  Seryl_tRNA_N  29 delleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklllai 104
                   + lle +++  +l++++  l +e  ++ ++++++k+++ed e+ +   + l+ +++ le+el+++e++l++++ ++
    CDO73254.1  78 QLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKL 153
                   45789999***************************************************************99765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.49
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Seryl_tRNA_N  31 lleldekrrelqveleelqaerNelskeIg 60 
                   +  l+++r +++++ ee+q++  e  +e  
    CDO73254.1 167 VTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                   444555555555555555554444444333 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.57   1.3e+02      30      52 ..      40      62 ..      10      74 .. 0.66
   2 ?    6.9   3.5     0.039       8.9      23      59 ..     120     156 ..      84     157 .. 0.85
   3 ?    3.0   0.4      0.64   1.4e+02      23      61 ..     159     200 ..     155     204 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.57
                HTTT-HHHHHHHHHHHHHHHHHH CS
     HisKA_3 30 llekdpekaaeqlreieelarea 52
                ++++  ek++e+l+ +++ a++a
  CDO73254.1 40 TFTSTMEKIKERLQSLRAEADSA 62
                33344446666666666666555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.039
                 HHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  23 qlelakrllekdpekaaeqlreieelarealqevRrl 59 
                 q+++a++ l+++ + ++e+l+++e+++++a++ +R++
  CDO73254.1 120 QSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQV 156
                 56677777777777999*****************986 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.64
                 HHHHHHHHT...TT-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  23 qlelakrll...ekdpekaaeqlreieelarealqevRrllh 61 
                 ++e ++r++   e++ ++ +++ +e++e  re+ +e+ +l++
  CDO73254.1 159 KAEHFERQVtrlEQERDQWEKKYEEAQEKYRESKRELDELVS 200
                 555555555333444447777777777777777666666665 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2     0.043       9.9      32      61 ..      37      69 ..       9      89 .. 0.66
   2 ?    2.5   6.7      0.97   2.2e+02       4      60 ..      98     152 ..      95     167 .. 0.72
   3 ?    7.5   1.1     0.027       6.1      37      70 ..     167     200 ..     158     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.043
      DUF883 32 lRerleerlerarerlrdaeea...vaerakea 61
                lR   ++++e+ +erl+ ++ +   +++ra+ea
  CDO73254.1 37 LRTTFTSTMEKIKERLQSLRAEadsAVARAEEA 69
                444455555555554444433311133333333 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.97
      DUF883   4 eaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerake 60 
                   ele++ a+++el  + +   ge+ +++ e l+ +++ + e+l++ae+++++ +++
  CDO73254.1  98 DTELEKAEAKVAELKAQNE--DGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDK 152
                 67999999999**996555..577788888888888888888887777776655544 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.027
      DUF883  37 eerlerarerlrdaeeavaerakeaaeaaddyVr 70 
                   rle+ r++ ++ +e+++e+ +e  ++ d+ V 
  CDO73254.1 167 VTRLEQERDQWEKKYEEAQEKYRESKRELDELVS 200
                 56899*************************9996 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4  10.8       1.1   2.5e+02      60     119 ..      37      99 ..      34     159 .. 0.71
   2 ?    4.1   3.2      0.15        35      50     102 ..     125     180 ..     118     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 1.1
    Lectin_N  60 Lketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadh...selllhvkqlvk 119
                 L++tf+ + ++++  +q+l+++++s+  + +  eak +k +q l +     ++l  +v  l +
  CDO73254.1  37 LRTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEqeiASLNHKVSILDT 99 
                 89999999999999*****99666666666666666666666543332000333333333333 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.15
    Lectin_N  50 nsqLqreLetLketfsnfssstlaeiqalss...qggslsekvtsleaklekkqqd 102
                 n  Lqr ++ L+e+++   ++ +  + +l+    ++++ +++vt le + ++ +++
  CDO73254.1 125 NEGLQRKIQLLEEELDAAEKNLKDAMDKLRQvdvKAEHFERQVTRLEQERDQWEKK 180
                 45578888888888887777776655555443335666666666666554444443 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  15.0     0.061        14       3      94 ..      85     203 ..      81     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.061
     DUF5082   3 tkisklqaqiaelrseiaaleekIerLk.....................eaktklsdekeslkqkkkklekplnsse......sWkGkeennydgirsn 74 
                 ++i++l+++++ l  e+++ e k+++Lk                        ++l++++++lk++  kl++ +++ e      +   +e+++ + ++++
  CDO73254.1  85 QEIASLNHKVSILDTELEKAEAKVAELKaqnedgeqsktaneglqrkiqLLEEELDAAEKNLKDAMDKLRQVDVKAEhferqvTRLEQERDQWEKKYEE 183
                 678888888888888888888888888877777777777777776665556678888888888888888888888886666655556688888889999 PP

     DUF5082  75 lessyqtyvdkldelidaie 94 
                  +++y++++++ldel++++e
  CDO73254.1 184 AQEKYRESKRELDELVSSME 203
                 99999999999999999886 PP

>> HHV-5_US34A  Herpesvirus US34A protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2       1.9   4.4e+02      35      56 ..      53      74 ..      41      80 .. 0.71
   2 ?   10.3   3.1    0.0026      0.58      30      60 ..     163     193 ..     150     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 1.9
  HHV-5_US34A 35 qrvkqerdahlrryeerlqknr 56
                 q ++ e d+ + r ee   kn+
   CDO73254.1 53 QSLRAEADSAVARAEEAEAKNK 74
                 5566677777777777777765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0026
  HHV-5_US34A  30 ftvavqrvkqerdahlrryeerlqknrarrr 60 
                  f   v r+ qerd   ++yee  +k r  +r
   CDO73254.1 163 FERQVTRLEQERDQWEKKYEEAQEKYRESKR 193
                  566799*******************998877 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  31.6     0.014       3.2     369     529 ..      40     198 ..      34     204 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
     DUF3584 369 altekhqdvqekydrrkqkikeelee..eleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateE 465
                  +t+ +++++e+++ +++++++  ++  e e  +++ e++  ek++  a  +++++ l  +l+ + ea+ +el+ ++++ e++    + ++++ +  eE
  CDO73254.1  40 TFTSTMEKIKERLQSLRAEADSAVARaeEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELE-KAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEE 137
                 467777888888888877777665441144445555666666677778888888888888887.67777777777777777777777777777777776 PP

     DUF3584 466 eleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleel 529
                 el +   a+++l+ a  +l++   + e+ +++ ++l+++rd+ ++++++a+++ ++++ +l+el
  CDO73254.1 138 ELDA---AEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 6543...334444555555555555555555555555555555555555555555555555544 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  14.1     0.012       2.8      74     152 ..      43     120 ..      36     126 .. 0.87
   2 ?    5.9  13.8     0.041       9.2      72     143 ..     128     198 ..     123     204 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.012
  Lebercilin  74 erlRksqekerelekklkekeaellrlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLerkleleek 152
                   + k +e+ ++l  +  ++ a+ ++++ k+kk+++L  +k+  e + L++k++ l ++le++e k+ eL+ + e  e+
  CDO73254.1  43 STMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQ-EIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQ 120
                 56778899999999999999999*************9999996.**************************988776555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.041
  Lebercilin  72 lrerlRksqekerelekklkekeaellrlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeL 143
                 l+ ++  ++e+ +++ek+lk++ ++l++++ k ++ ++ +  +  +er++ +kk ee+++k+ e++++++eL
  CDO73254.1 128 LQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVT-RLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 34444444555555555555555555555555555555442.222355555555555555555555555555 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   9.8         3   6.8e+02       6      45 ..      53      95 ..      36     120 .. 0.48
   2 ?    1.9   7.3         1   2.4e+02       2      35 ..      84     117 ..      83     147 .. 0.65
   3 ?    8.5   6.4    0.0095       2.2       3      57 ..     141     198 ..     139     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 3
  Cep57_CLD_2  6 ktLqnrLdsltrklqvheeelkr...LnkERdsalrqLgvAye 45
                 ++L+ + ds++ +++++e  +k+   L  E +  + +L  + +
   CDO73254.1 53 QSLRAEADSAVARAEEAEAKNKKyeqLLLEKEQEIASLNHKVS 95
                 3444444444444444443333211122244444444444333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 1
  Cep57_CLD_2   2 eaevktLqnrLdsltrklqvheeelkrLnkERds 35 
                  e+e+ +L  + ++l+++l+++e   ++L + ++ 
   CDO73254.1  84 EQEIASLNHKVSILDTELEKAEAKVAELKAQNED 117
                  79999*****************888888874443 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0095
  Cep57_CLD_2   3 aevktL...qnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaeveal 57 
                  a+ k L    ++L +++ k+++ e    rL +ERd  +++  +A e  +e k+e++ l
   CDO73254.1 141 AAEKNLkdaMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                  555666333357778888******************************9999999986 PP

>> DUF702  Domain of unknown function (DUF702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.9     0.069        16      26      88 ..      27      88 ..      20     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.069
      DUF702 26 ksrgfdCetHvkstwvpa.akrrerqqqlaalqaqqaeaeaaasassaeaskrpre.e.kaaaasa 88
                +s  f+ +tH+++t+ ++  k +er q+l a ++++ + ++    ++++++k++ +   +++++ a
  CDO73254.1 27 RSPPFHPPTHLRTTFTSTmEKIKERLQSLRAEADSAVARAE----EAEAKNKKYEQlLlEKEQEIA 88
                5677999********99835678998888776666554333....222233333321111111111 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  14.9     0.028       6.3      68     143 ..      45     120 ..      38     126 .. 0.66
   2 ?    5.9  16.9     0.052        12      77     139 ..     127     190 ..     119     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG CS
        YscO  68 lekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraeasrqqerkEeqel 143
                 +ek+k+++++Lr++  +   ++eea+++ ++ ++ l ++++e++   ++v+ ++ + ++ +a  + ++ + E+ e+
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQ 120
                 5666777777777666666777777777777777777777777777777776666666666666666666666665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
        YscO  77 lLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvrae.asrqqerkE 139
                  L+ k + le++++ a+++l+ + ++lrq  ++ ++ +r+v +++++ +++++  +++q +++E
  CDO73254.1 127 GLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKyEEAQEKYRE 190
                 57788899*******************************************9762333444444 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   8.8      0.56   1.3e+02      30     121 ..      32     122 ..       7     125 .. 0.70
   2 ?    4.9  27.0      0.13        29      17     142 ..      39     202 ..      37     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.56
       Med21  30 hdpsplseqdpsspsaapalakip.....qeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgigsseeeqeerikeLeeelreveeer 121
                 h+p+ l  + +s+ ++       +      ++++ ++   +ee +a+ ++  + l+ keq+I  L ++   ++++ e+ e++++eL++++++ e+ +
  CDO73254.1  32 HPPTHLRTTFTSTMEKI------KerlqsLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSK 122
                 33333332222222222......133333356667778889999999999****************************************9999876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.13
       Med21  17 eqfyatlgylntshdpsplseqdpsspsaapalakip.......................................qeekeepepdspeefaatqrela 76 
                 + f +t++ ++++ +  +++  d+ + +a++a+ak++                                       q+e+ e++++++e ++++++ l 
  CDO73254.1  39 TTFTSTMEKIKERLQSLRAE-ADSAVARAEEAEAKNKkyeqlllekeqeiaslnhkvsildtelekaeakvaelkaQNEDGEQSKTANEGLQRKIQLLE 136
                 56777777777777777777.555555566656655567788888888888888888888888888888888999999999****************** PP

       Med21  77 rdlilkeqqIeyLIssLPgigsseeeqeerikeLeeelreveeereekvkekeellkkveellrav 142
                 + l   e++++   ++L +++++ e+ e+++ +Le+e ++ e+++ee+ ++ +e  ++++el++++
  CDO73254.1 137 EELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSM 202
                 *************************************************************99876 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1       0.4        92      50      79 ..      31      60 ..      12      66 .. 0.67
   2 ?    8.4   4.8     0.012       2.7      24      82 ..      44     105 ..      35     108 .. 0.76
   3 ?    5.9   5.0     0.068        16      23      77 ..     119     173 ..     109     176 .. 0.87
   4 ?    5.1   1.0      0.12        27      24      64 ..     162     202 ..     157     205 .] 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.4
        KxDL 50 fkqgtkllkevkkdLesifkkirslkakla 79
                f   t+l     + +e+i+++++sl+a++ 
  CDO73254.1 31 FHPPTHLRTTFTSTMEKIKERLQSLRAEAD 60
                555566666777888889999999888775 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.012
        KxDL  24 rlnkknreLlelnal...sqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakky 82 
                 +++k +++L+ l+a+   + +r ++++a+ k++ +ll e  +++ s++ k++ l ++l+k  
  CDO73254.1  44 TMEKIKERLQSLRAEadsAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAE 105
                 4455555555555550005678888889999999************************9976 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.068
        KxDL  23 grlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkak 77 
                  + +  n+ L++ ++l++e+l  +++++k+ +  l++v    e+  +++++l+++
  CDO73254.1 119 EQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQE 173
                 566677999******************************9999999999999875 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.12
        KxDL  24 rlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdL 64 
                 +++ +  +L++ +++ +++++++++++++ ++ l e+ + +
  CDO73254.1 162 HFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELVSSM 202
                 67888889999999999999999999999998888876655 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.8     0.012       2.8     222     391 ..      38     202 ..      33     205 .] 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.012
    ArAE_2_N 222 sfqvlktmlkllkllkkalkfnsnflatlepsnesewlnfkklekditkirslypkleaelaflplEfsigrfsaedvkelrstlrrlissiagLvyfy 320
                 ++ ++ tm+k+ + l+++     + +a++e+ + ++    kk+e++     ++++ l+ +++ l  E+  +  +++++k+  +  ++  ++  gL    
  CDO73254.1  38 RTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKN----KKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKI 132
                 678999999999999999888888888888877665....999999***************************************************** PP

    ArAE_2_N 321 dlleelravilkserssklaa..nghakldseieekkrevgayetkksiellear..daqrsltlsdldevieal 391
                 +llee ++++      ++l++  ++ +++d ++e  +r+v+++e++++    + +  +++++++  +lde+++++
  CDO73254.1 133 QLLEEELDAAE-----KNLKDamDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEeaQEKYRESKRELDELVSSM 202
                 ******99443.....34555556777788888888899999988776433333334778888888888888766 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  18.8     0.028       6.4      42     151 ..      46     163 ..      38     167 .. 0.76
   2 ?    4.3   0.3      0.22        50      60      93 ..     165     198 ..     158     204 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.028
                 ----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHH..........HHHHHHHHHH.HHHHHHHH CS
     T3SSipB  42 sklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaaeqQagaa........adalqadeal.qKkldaas 131
                 +k+ + lq +  ea+ a   +e+a +k ++ ++   + ++ +    ++++ L   e eka+++ ae  a++          + lq + +l + +ldaa+
  CDO73254.1  46 EKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSIL-DTELEKAEAKVAELKAQNEdgeqsktaNEGLQRKIQLlEEELDAAE 143
                 5677888888888888888888888888888888888888888888899888.66777888877777777666655544466777776656889***** PP

                 HHHHHHHHHHHHHHTXXXXX CS
     T3SSipB 132 klsekakakekevDdisakv 151
                 k  ++a++k ++vD  + ++
  CDO73254.1 144 KNLKDAMDKLRQVDVKAEHF 163
                 **************777666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
     T3SSipB  60 ddleaaiekadqaksaadaatkkvdeaqkrlkeL 93 
                 ++++   ++ dq ++++++a++k  e ++ l+eL
  CDO73254.1 165 RQVTRLEQERDQWEKKYEEAQEKYRESKRELDEL 198
                 4455555566666666666666666666677776 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2     0.013         3       9      81 ..       8      75 ..       2      94 .. 0.71
   2 ?    2.1   0.9       1.3   3.1e+02       7      71 ..      83     147 ..      77     157 .. 0.75
   3 ?    4.0   3.5      0.35        80      11      67 ..     132     192 ..     129     203 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.013
      DUF573  9 DEielLqglldfksktgtspksdldafyeavksslssdvsksqlseKlrrLkkkyrnavskikkgkdpsfkkp 81
                D +++L + l+ +++++t    +   f+   + ++++  + ++++e+l++L+   ++av+++++   ++ +k+
  CDO73254.1  8 DTLSVLLNALAQTQHSNT---LRSPPFHPPTHLRTTFTSTMEKIKERLQSLRAEADSAVARAEEA--EAKNKK 75
                556655555554444444...58899999999999999*******************99996533..233333 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 1.3
      DUF573   7 eeDEielLqglldfksktgtspksdldafyeavksslssdvsksqlseKlrrLkkkyrnavskik 71 
                 +e Ei+ L+  ++   ++ ++++ +++++ ++ ++  +s+  ++ l+ K++ L +  ++a ++ k
  CDO73254.1  83 KEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLK 147
                 78888888888888776666666888888888888888888889999999988887777766654 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.35
      DUF573  11 ielLqglldfksktgtspk...sdldafyeavksslss.dvsksqlseKlrrLkkkyrnav 67 
                 i+lL++ ld ++k+ +++    +++d   e+++++++  + + +q  +K+ + ++kyr+  
  CDO73254.1 132 IQLLEEELDAAEKNLKDAMdklRQVDVKAEHFERQVTRlEQERDQWEKKYEEAQEKYRESK 192
                 7888888888777777644233333444455555544325555777777777777777643 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.6       1.2   2.8e+02      47      74 .]      43      70 ..      39      70 .. 0.86
   2 ?    9.0  19.2    0.0058       1.3       4      73 ..      77     149 ..      74     150 .. 0.89
   3 ?    8.7  11.0    0.0075       1.7      13      72 ..     131     190 ..     130     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 1.2
  TMF_DNA_bd 47 keikelkkkleklekeleeleerlkeae 74
                +++++ k++l++l  e ++  +r++eae
  CDO73254.1 43 STMEKIKERLQSLRAEADSAVARAEEAE 70
                6788999999999999999999999987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0058
  TMF_DNA_bd   4 ekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkele...keikelkkkleklekeleeleerlkea 73 
                 e +l eK+++Ia L      L  +  k ++++ +L+++n++ e   +  + l++k++ le+el+  e+ lk a
  CDO73254.1  77 EQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEqskTANEGLQRKIQLLEEELDAAEKNLKDA 149
                 67999**************************************4434445567****************9976 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0075
  TMF_DNA_bd  13 qIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72 
                 +I+ L eE+ + +k+  + + ++ + + k+++ e ++++l+++ ++ ek+ ee +e+++e
  CDO73254.1 131 KIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRE 190
                 6888898888888888888888888888****************************9987 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.7      0.64   1.4e+02       4      33 ..      44      73 ..      40      83 .. 0.68
   2 ?   10.2   5.1    0.0027      0.62       2      45 ..      84     137 ..      83     137 .. 0.86
   3 ?    6.7   1.0     0.033       7.6       1      28 [.     128     155 ..     121     165 .. 0.57
   4 ?    7.2   1.9     0.023       5.2       2      31 ..     164     193 ..     160     203 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.64
                HHHHHHHHHHHHHHHHHHHHHHHHHHH.HH CS
        Swi5  4 eikeleeqleelekelaelkeelkekkdpe 33
                ++++++e+l++l++e +++ ++ +e ++++
  CDO73254.1 44 TMEKIKERLQSLRAEADSAVARAEEAEAKN 73
                677888888888888888888877654332 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHHHHHHHHHHH CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekk..........dpeetvkrhIklLhe 45 
                 e+ei++l+ +++ l++el++++++  e k          +++e ++r+I+lL e
  CDO73254.1  84 EQEIASLNHKVSILDTELEKAEAKVAELKaqnedgeqskTANEGLQRKIQLLEE 137
                 6889999999999999999999888877788888999999***********986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Swi5   1 leaeikeleeqleelekelaelkeelke 28 
                 l+++i+ lee+l++ ek+l+++ ++l++
  CDO73254.1 128 LQRKIQLLEEELDAAEKNLKDAMDKLRQ 155
                 3455555555555555555555555553 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekkd 31 
                 e+++ +le++ +++ek+++e++e+++e k 
  CDO73254.1 164 ERQVTRLEQERDQWEKKYEEAQEKYRESKR 193
                 568889999999999999999999987653 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.8     0.086        19       5      71 ..      44     117 ..      35     126 .. 0.77
   2 ?    6.8  11.2     0.036       8.3       9      80 ..     124     199 ..     118     205 .] 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.086
     DUF4164   5 eleaaltrLeaaldsLEkavdrrleaerkr.......deleaeiealgedrsRLaeeLdqaearaarleevnrE 71 
                 ++e++ +rL+    + ++av r  eae+k+        e e+ei+ l+   s L+ eL +aea+ a+l++ n++
  CDO73254.1  44 TMEKIKERLQSLRAEADSAVARAEEAEAKNkkyeqllLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNED 117
                 45555555555555556666666666666666666668889****************************99986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.036
     DUF4164   9 altrLeaaldsLEkavdrrleaerkr....deleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaai 80 
                 a + L+++++ LE+ +d+  ++ ++     ++++ + e  ++  +RL++e dq e + ++ +e  rE +r+L+ + 
  CDO73254.1 124 ANEGLQRKIQLLEEELDAAEKNLKDAmdklRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELDELV 199
                 5666777777777777777776666665556666666777777777777777777777777777777777777654 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  21.6      0.11        24     131     257 ..      34     171 ..      14     204 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.11
  Exonuc_VII_L 131 PtaaAelvvpdkaeleeqleelerrlekaikr.............lleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerl 214
                   Pt+     ++  ++++e+l++l+++ ++a++r             ll ek+q++ +l+++++  ++ le+++ ++ el+++ e    +q k+++e l
    CDO73254.1  34 PTHLRTTFTSTMEKIKERLQSLRAEADSAVARaeeaeaknkkyeqLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDG--EQSKTANEGL 128
                   8888888888899999999999998888886511111111111113344444444444444433444444444444433333331..1111111111 PP

  Exonuc_VII_L 215 eelkerlkekleekkerlkklkerlelleekkerleeleekle 257
                   ++  + l+e+l++++++lk+  ++l++++ k e++e++ ++le
    CDO73254.1 129 QRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLE 171
                   1111111223333333333332333322222222222222222 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4  26.2       8.8     2e+03      25     127 ..      46     190 ..      27     205 .] 0.43

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8.8
       Atg14  25 yelrerlaklksekeslkkkiekalegke............................eaeqledkiknkkakleelksliadlrerlqelkdklsqlkk 95 
                 ++ +erl++l++e +s   + e+a+++++                            +ae + +++k ++++ e+ k+  + l++++q+l++ l+   k
  CDO73254.1  46 EKIKERLQSLRAEADSAVARAEEAEAKNKkyeqlllekeqeiaslnhkvsildteleKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEK 144
                 555666666666666666666666666665555555555555554443332222221111111233333333334444444444444444444444444 PP

       Atg14  96 eieekkkklaklsdklk.................kRrsdleslqnelee 127
                  ++++  kl++ + k                   k++   e +q++ +e
  CDO73254.1 145 NLKDAMDKLRQVDVKAEhferqvtrleqerdqweKKY---EEAQEKYRE 190
                 4444444444333333233333333333333111111...123333333 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.1      0.25        56      34      95 ..      50     108 ..      36     113 .. 0.60
   2 ?    8.2   8.7     0.013         3      11      95 ..      97     181 ..      96     182 .. 0.87
   3 ?    2.5   0.1       0.8   1.8e+02      30      51 ..     182     203 ..     177     205 .] 0.61

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.25
     BLOC1_2  34 ekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEakf 95 
                 e+ ++l+ +a+s+ +     +e +++ ++y q + + e+++++L + vs LD+   + Eak+
  CDO73254.1  50 ERLQSLRAEADSAVAR---AEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKV 108
                 3333333333333333...3333335566666667778888888888888888888887776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.013
     BLOC1_2  11 leaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEakf 95 
                 l+ ele + +++  L++ Ne  ++  ++ +    +++   e+l++ +++l+  ++++ q++ + +++e  v +L++   + E+k+
  CDO73254.1  97 LDTELEKAEAKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKY 181
                 678899999999999999999888888888888888888899999999**************************99888888776 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.8
     BLOC1_2  30 eaasekykklkdvaaslekkle 51 
                 e+a+eky + k+++++l +++e
  CDO73254.1 182 EEAQEKYRESKRELDELVSSME 203
                 5666677777777666666665 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  10.5    0.0027      0.61     173     253 ..      45     121 ..      38     133 .. 0.70
   2 ?    0.6  13.2      0.87     2e+02     184     262 ..      98     188 ..      97     203 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0027
  Fmp27_WPPW 173 kelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskel 253
                 +e ++eRl++l+++ ++   + ee+e k++k    +++ + e e+ei++l++k+++l+t le+ +++ ++ + ++++ +++
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAEEAEAKNKK----YEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQS 121
                 6789*********************999999....6777777777777777777777777777777766333222211111 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.87
  Fmp27_WPPW 184 eeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse.............eeeskskelsaastsesf 262
                 ++++ek e k+ el+ ++e   e++k+  e l+++i+ l+e+l+  e+ l+d   + ++ +             e+e+++ e++ ++ +e++
  CDO73254.1  98 DTELEKAEAKVAELKAQNED-GEQSKTANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDvkaehferqvtrlEQERDQWEKKYEEAQEKY 188
                 56666666666666666666.45555555556666655555555555555555444443334444444444443222222222222222222 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  28.1     0.061        14       6     164 ..      42     204 ..      20     205 .] 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.061
     DUF4795   6 aellkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvk.adkeeveeelaekadkeaLatkvsrdqfDeakkeLekmleellek 103
                 + +++k++e ++ l +e ++   +++e e + +++e+ l   +++i  l+ +     +e+e+++a  a  +a +     +q  +a + L+++++ l e 
  CDO73254.1  42 TSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVsILDTELEKAEAKVAELKAQNEDG--EQSKTANEGLQRKIQLLEEE 138
                 55699999999999999999999999999999999999999999999998544355577777777777766666555..667789999*********** PP

     DUF4795 104 leeqeealkkaldtLqeelkekld.....rlelepLkeqleerlkelqkelqeamekedk.edeaag 164
                 l+++e++lk a+d+L+ +++ k +     +  le+ ++q e++ +e q++ +e  + +d+   +++g
  CDO73254.1 139 LDAAEKNLKDAMDKLR-QVDVKAEhferqVTRLEQERDQWEKKYEEAQEKYRESKRELDElVSSMEG 204
                 ****************.99999999988888899999***********9999988888877566776 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       9.6   2.2e+03      90     102 ..      43      55 ..      34      62 .. 0.67
   2 ?    8.9   8.7    0.0089         2      32      99 ..      76     146 ..      58     151 .. 0.74
   3 ?    3.7   5.2      0.39        87      31      79 ..     148     196 ..     136     205 .] 0.47

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 9.6
                 HHHHHHHHHHHHH CS
       DUF16  90 etLqkinkRlDsi 102
                  t++ki++Rl s+
  CDO73254.1  43 STMEKIKERLQSL 55 
                 4666666666554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0089
                 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHHHHHHHHHHHHH CS
       DUF16  32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln....kvdetleliletLqkinkRl 99 
                  +q L + e+++++l+++++ l  + ek ++k+ elk++ +  ge+ +     +++ ++l+ e L++ +k l
  CDO73254.1  76 YEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNED-GEQSKtaneGLQRKIQLLEEELDAAEKNL 146
                 46778999*************************999887654.33344233456666777777777777766 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.39
                 .BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  31 snkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                 +   +L++++ k +  + q+ +leq+ ++ ++k +e +++    ++el+
  CDO73254.1 148 DAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYEEAQEKYRESKRELD 196
                 2333455555555555555555555555555555555555444444444 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   3.9      0.27        61      98     157 ..      47     106 ..      34     110 .. 0.62
   2 ?    4.5   6.0       0.1        23      94     158 ..      78     145 ..      69     148 .. 0.84
   3 ?    8.9   4.6    0.0046         1     102     159 ..     124     181 ..     114     190 .. 0.90
   4 ?    6.2   1.7     0.031         7      76     132 ..     149     203 ..     143     205 .] 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.27
  Fzo_mitofusin  98 elsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfee 157
                    ++++ ++ l+++ d + +  ee  ++ +k  + l e +++   l +k s+l++eLek e+
     CDO73254.1  47 KIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEA 106
                    334444445555555554444444444444445566777888999**********99875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.1
  Fzo_mitofusin  94 qvqqelsstfarlcqqvdetekelee...eikelekeiekleevqkkakllrnkaslleseLekfeeq 158
                    q+  e ++ +a l+++v   ++ele+   +++el+++ e  e+ ++  + l+ k +lle+eL++ e++
     CDO73254.1  78 QLLLEKEQEIASLNHKVSILDTELEKaeaKVAELKAQNEDGEQSKTANEGLQRKIQLLEEELDAAEKN 145
                    56666678899999***9999999753226889999999999999999***************99875 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0046
  Fzo_mitofusin 102 tfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeqy 159
                    + + l+++++  e+el++  k+l+  ++kl +v  ka+++  + ++le+e ++ e++y
     CDO73254.1 124 ANEGLQRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKY 181
                    4567999999999999999999999999999999999999999999999999999998 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.031
  Fzo_mitofusin  76 atekLrlivsltsancshqvqqelsstfarlcqqvdetekeleeeikelekeiekle 132
                    a +kLr+ v++++++++ qv+ +l++  ++++++ +e++++ +e+ +el++ ++++e
     CDO73254.1 149 AMDKLRQ-VDVKAEHFERQVT-RLEQERDQWEKKYEEAQEKYRESKRELDELVSSME 203
                    5567765.6888888888886.48888888888888888888888888888888776 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.0     0.017       3.9      19     106 ..      38     125 ..      34     129 .. 0.92
   2 ?    4.3  11.1      0.13        29      65     143 ..     129     203 ..     125     205 .] 0.92

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH CS
        SHE3  19 nlqLtqqsqeLleklelaqkkeskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssasetel 106
                  ++ t + +++ e+l++  +  ++ +    ++   N +   lL  Ke+ +  l++++s l ++ e+++++  +lk + e+ ++s+t++
  CDO73254.1  38 RTTFTSTMEKIKERLQSLRAEADSAVARAEEAEAKNKKYEQLLLEKEQEIASLNHKVSILDTELEKAEAKVAELKAQNEDGEQSKTAN 125
                 5788999999*******************************************************************99988877765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  65 errlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesle 143
                 +r+++ le+el   +++  ++  +  q++ ++e+ + + t+le+e ++ + +Y+   ++q++Y+e  ++e++eL  s+e
  CDO73254.1 129 QRKIQLLEEELDAAEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEKKYE---EAQEKYRES-KRELDELVSSME 203
                 699999***********************************************9...89****997.889999999887 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.2     0.068        15      15      79 ..      45     111 ..      10     114 .. 0.73
   2 ?    8.2   6.1     0.017       3.8      14      78 ..      96     162 ..      85     167 .. 0.65
   3 ?    7.1   4.8     0.039       8.8       8      70 ..     142     203 ..     139     205 .] 0.61

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.068
     DUF2203  15 lkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeieelGvevkdl 79 
                 ++++ e+l++lr+e+ +++++ eea+a+++k e    e+e+e+++l+++++ l +e+e+  ++v +l
  CDO73254.1  45 MEKIKERLQSLRAEADSAVARAEEAEAKNKKYEqlLLEKEQEIASLNHKVSILDTELEKAEAKVAEL 111
                 4445555555555555555555555555544444588888888888888888888888887777655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.017
     DUF2203  14 llkelleelralrkeleeleeeleeakaeaekse.....aaeleaeleeleaeieelveeieelGvevkd 78 
                  l+  le+   ++++++el+++ e+ +++++++e      + le+el+++e+++++++++++++ v+   
  CDO73254.1  96 ILDTELEK---AEAKVAELKAQNEDGEQSKTANEglqrkIQLLEEELDAAEKNLKDAMDKLRQVDVKAEH 162
                 34444444...44444444444444444444444666779999*******************99998765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.039
     DUF2203   8 AnalLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeie 70 
                 A++ L    ++l+++  +++++e+ +++le+++++ ek +++e++++++e + e++elv+ +e
  CDO73254.1 142 AEKNLKDAMDKLRQVDVKAEHFERQVTRLEQERDQWEK-KYEEAQEKYRESKRELDELVSSME 203
                 55555555555555555555555555566666666443.378888888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3481  (0.194155); expected 358.6 (0.02)
Passed bias filter:                      938  (0.0523175); expected 358.6 (0.02)
Passed Vit filter:                       251  (0.0139997); expected 17.9 (0.001)
Passed Fwd filter:                       156  (0.00870099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              79  [number of targets reported over threshold]
# CPU time: 1.61u 0.34s 00:00:01.95 Elapsed: 00:00:00.56
# Mc/sec: 1096.86
//
Query:       CDO73255.1  [L=123]
Description: hypothetical protein BN946_scf185008.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-26   91.2  25.8    5.3e-23   81.7  16.3    2.0  2  Tropomyosin_1    Tropomyosin like
      1e-10   41.4  25.3    2.8e-06   26.9   9.9    2.1  2  Tropomyosin      Tropomyosin
    8.8e-06   25.2  22.3    1.1e-05   24.9  22.3    1.2  1  GAS              Growth-arrest specific micro-tubule binding
     0.0003   21.1  24.5     0.0004   20.6  24.5    1.2  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
     0.0003   20.9  19.9      0.043   13.9   9.9    2.2  2  ADIP             Afadin- and alpha -actinin-Binding
    0.00068   18.6  22.3    0.00079   18.4  22.3    1.0  1  Spc7             Spc7 kinetochore protein
    0.00097   19.3  10.4    0.00097   19.3  10.4    2.4  2  Cnn_1N           Centrosomin N-terminal motif 1
     0.0026   18.1  26.8     0.0049   17.3   8.4    2.1  2  DUF4200          Domain of unknown function (DUF4200)
     0.0034   17.6  12.9     0.0046   17.2   5.8    2.3  2  KLRAQ            Predicted coiled-coil domain-containing prot
     0.0039   17.0  28.1     0.0044   16.9  28.1    1.0  1  ERM              Ezrin/radixin/moesin family
      0.004   17.4  12.9      0.065   13.5  12.7    2.7  1  DUF5082          Domain of unknown function (DUF5082)
     0.0048   16.9  23.2       0.13   12.3  24.2    2.0  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
     0.0053   15.0  17.4       0.02   13.1  17.4    1.8  1  EzrA             Septation ring formation regulator, EzrA
      0.006   16.6  10.2      0.012   15.6   9.1    1.8  2  Laminin_II       Laminin Domain II
     0.0065   16.9   6.4     0.0065   16.9   6.4    3.0  3  KELK             KELK-motif containing domain of MRCK Ser/Thr
     0.0089   15.0  19.8       0.01   14.8  19.8    1.0  1  DUF812           Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.012   15.9  25.9       0.12   12.5   9.3    2.0  2  ATG16            Autophagy protein 16 (ATG16)
      0.019   14.5  13.2      0.018   14.5  12.3    1.3  1  Leu_zip          Leucine zipper
       0.02   14.3  17.9      0.022   14.2  17.9    1.1  1  DUF2353          Uncharacterized coiled-coil protein (DUF2353
      0.023   14.7   8.0      0.046   13.8   4.5    1.9  2  DUF1664          Protein of unknown function (DUF1664)
      0.024   14.0   7.9      0.056   12.9   1.6    2.0  2  FliD_C           Flagellar hook-associated protein 2 C-termin
      0.027   14.9  24.6      0.052   13.9  14.2    2.0  2  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
      0.031   13.6  19.9      0.022   14.1  10.9    2.0  2  DUF3450          Protein of unknown function (DUF3450)
      0.033   14.2  26.4        0.5   10.4  17.5    2.3  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
      0.035   14.1  22.1       0.16   11.9   7.4    3.0  2  Prefoldin_2      Prefoldin subunit
      0.043   12.9  11.4        0.3   10.2   4.4    2.0  2  APG17            Autophagy protein Apg17
      0.045   13.5  15.8      0.055   13.2  15.8    1.2  1  SHE3             SWI5-dependent HO expression protein 3
      0.046   14.0  13.6        0.6   10.4   2.1    2.2  2  BLOC1_2          Biogenesis of lysosome-related organelles co
      0.085   13.4  30.2       0.34   11.4  30.2    1.7  1  APG6_N           Apg6 coiled-coil region
      0.085   11.0  20.5      0.093   10.9  20.5    1.0  1  HOOK             HOOK protein
      0.088   12.0   9.6        0.1   11.8   9.6    1.2  1  TMPIT            TMPIT-like protein
        0.1   11.5  13.7       0.19   10.7  13.7    1.4  1  IFT57            Intra-flagellar transport protein 57
       0.11   12.9  18.3        2.2    8.7   6.4    2.5  2  CLZ              C-terminal leucine zipper domain of cyclic n
       0.16   12.3   8.9       0.18   12.2   8.3    1.3  1  Syntaxin_2       Syntaxin-like protein
       0.16   12.0  11.3        1.6    8.8   1.6    2.1  2  DUF730           Protein of unknown function (DUF730)
       0.18   12.1  14.8      0.077   13.3   4.9    2.2  2  HMMR_C           Hyaluronan mediated motility receptor C-term
       0.18   11.5  24.1        0.3   10.7   5.1    2.9  3  GrpE             GrpE
       0.18   11.5   4.6       0.33   10.7   0.8    2.2  2  Lectin_N         Hepatic lectin, N-terminal domain
       0.18   11.2   1.9       0.22   11.0   1.9    1.0  1  Cir_Bir_Yir      Plasmodium variant antigen protein Cir/Yir/B
       0.22   11.5  21.6          1    9.3   4.4    2.3  2  Ax_dynein_light  Axonemal dynein light chain
       0.25    9.5  17.2       0.28    9.3  17.2    1.0  1  FPP              Filament-like plant protein, long coiled-coi
       0.26   11.5   7.9       0.91    9.8   0.2    3.0  2  WXG100           Proteins of 100 residues with WXG
       0.27   11.3  22.0       0.11   12.6  11.1    1.9  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.29   11.1  26.8      0.044   13.7  16.1    2.2  2  YscO             Type III secretion protein YscO
       0.29   11.3  21.6       0.15   12.2   7.3    2.0  2  DUF4337          Domain of unknown function (DUF4337)
       0.32   11.4   2.3          1    9.8   0.2    2.1  2  DUF5631          Family of unknown function (DUF5631)
       0.32   11.0  22.4        3.7    7.6  15.5    2.4  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
       0.35   11.0  19.2       0.58   10.3   0.9    3.0  3  Swi5             Swi5
       0.39   10.8  20.5       0.28   11.3  12.4    2.0  2  Mod_r            Modifier of rudimentary (Mod(r)) protein
       0.44    9.8  16.2       0.86    8.9  16.2    1.4  1  DUF4407          Domain of unknown function (DUF4407)
       0.47    8.9   7.6       0.31    9.5   3.5    1.9  2  Herpes_UL6       Herpesvirus UL6 like
       0.49   11.3  19.8        1.4    9.8   3.6    3.0  3  Rho_Binding      Rho Binding
        0.5    9.0  12.4       0.78    8.3  12.4    1.3  1  AAA_13           AAA domain
       0.51    9.9  13.1       0.64    9.6  13.1    1.1  1  PEARLI-4         Arabidopsis phospholipase-like protein (PEAR
       0.66   10.3   3.1        9.4    6.6   0.1    2.2  2  DUF948           Bacterial protein of unknown function (DUF94
        0.7   10.0  17.1       0.24   11.5   4.7    3.2  4  bZIP_1           bZIP transcription factor
       0.72    9.5  17.8       0.75    9.4   5.7    2.0  2  DUF2968          Protein of unknown function (DUF2968)
       0.81   10.0  11.3        1.6    9.0   4.5    2.1  2  Gp-FAR-1         Nematode fatty acid retinoid binding protein
       0.83   10.1   9.4       0.75   10.2   1.4    2.9  2  FlaC_arch        Flagella accessory protein C (FlaC)
       0.86    9.4  16.9        2.3    8.0  16.9    1.7  1  DUF724           Protein of unknown function (DUF724)
        1.1    9.1   8.1       0.37   10.7   3.0    2.0  2  Sec34            Sec34-like family
        1.2    9.5  21.0       0.39   11.0   9.5    2.3  2  THOC7            Tho complex subunit 7
        1.2    9.6  20.3          2    8.9  20.3    1.4  1  Fez1             Fez1
        1.2    9.6  25.9        7.7    7.0   8.5    3.2  2  ZapB             Cell division protein ZapB
        1.2    9.1  19.6       0.99    9.4   9.2    2.1  2  Rootletin        Ciliary rootlet component, centrosome cohesi
        1.2    9.3  11.7       0.98    9.6   7.5    2.0  2  Fib_alpha        Fibrinogen alpha/beta chain family
        1.3    9.2  18.6        5.1    7.2   7.1    3.0  3  TolA_bind_tri    TolA binding protein trimerisation
        1.3    6.9   9.2        1.5    6.7   9.2    1.1  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        1.3    9.1  21.8        1.1    9.3   1.5    3.1  3  Cep57_CLD_2      Centrosome localisation domain of PPC89
        1.4    6.3  21.9        1.6    6.1  21.9    1.0  1  DUF3584          Protein of unknown function (DUF3584)
        1.5    8.6  21.3          3    7.5   7.5    2.2  2  DUF4201          Domain of unknown function (DUF4201)
        1.5    9.1  16.1        1.9    8.8   4.6    2.5  2  Spc24            Spc24 subunit of Ndc80
        1.5    7.8  18.9        6.7    5.7  19.0    1.7  1  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.5    8.9  21.2       0.86    9.7   8.9    2.4  3  BRE1             BRE1 E3 ubiquitin ligase
        1.6    8.8  27.6       0.31   11.1  12.9    2.3  2  DHR10            Designed helical repeat protein 10 domain
        1.8    8.6  12.3          3    7.8   2.3    2.1  2  DUF4446          Protein of unknown function (DUF4446)
        1.8    8.1  16.2        4.2    6.9  16.2    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          2    9.0  16.8        1.2    9.7   4.7    2.6  2  bZIP_Maf         bZIP Maf transcription factor
        2.3    7.8  19.1        3.4    7.2  12.2    2.4  2  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
        2.7    7.5  10.9        3.3    7.2  10.9    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
        2.9    6.6  16.2        9.4    5.0  14.9    1.8  2  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
          3    7.2  16.9        5.5    6.3  16.9    1.4  1  GBP_C            Guanylate-binding protein, C-terminal domain
          3    8.0  10.2        5.9    7.1  10.2    1.6  1  LIN37            LIN37
        3.5    8.0  22.2         18    5.6  22.2    1.9  1  OmpH             Outer membrane protein (OmpH-like)
        3.6    6.2  15.9        3.2    6.4   2.2    2.0  2  DUF773           CDK5 regulatory subunit-associated protein 3
        3.8    7.0   8.8        1.5    8.4   4.8    2.1  3  Fzo_mitofusin    fzo-like conserved region
        3.9    6.8   7.3       0.66    9.3   1.1    1.9  2  AAA-ATPase_like  Predicted AAA-ATPase
        4.4    7.5  20.4       0.33   11.2   7.7    2.6  3  Med21            Subunit 21 of Mediator complex
        4.8    5.6   7.1        5.4    5.4   7.1    1.1  1  FUSC             Fusaric acid resistance protein family
        4.8    7.7  13.2    5.8e+02    1.0  13.2    2.2  1  DUF16            Protein of unknown function DUF16
        6.7    6.9  13.0        9.6    6.4  11.6    2.0  1  Med2             Mediator complex subunit 2
          7    5.1  15.5        5.2    5.6  12.6    1.7  2  FapA             Flagellar Assembly Protein A
        7.6    7.0  18.9        1.1    9.6   4.0    2.5  2  Nnf1             Nnf1
        9.3    6.5  21.0        2.2    8.5   4.3    3.0  3  XhlA             Haemolysin XhlA
        9.3    7.0  15.6        3.1    8.5   5.9    2.0  2  DUF2203          Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.8   7.1e-05     0.013       1      29 [.       7      35 ..       7      38 .. 0.95
   2 !   81.7  16.3   2.8e-25   5.3e-23      71     142 ..      39     110 ..      36     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.1e-05
  Tropomyosin_1  1 klnsLkleaeeaqekaeeleekvKeleqe 29
                   +l+ L+++a++a ++ae++e+k+K++eqe
     CDO73255.1  7 RLQLLRADADAANKRAEAAEAKNKHYEQE 35
                   6899***********************98 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 2.8e-25
  Tropomyosin_1  71 kktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewekkyeeleekykeak 142
                    +kt+ne l++k+qlLE+el+++ ++Lk+t ekLr+ dv+ae++ER++++Le+erd wekkyee++eky+e+k
     CDO73255.1  39 LKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESK 110
                    589*******************************************************************99 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5  10.2   3.8e-08   7.2e-06       2      69 ..       7      74 ..       6      76 .. 0.96
   2 !   26.9   9.9   1.5e-08   2.8e-06     178     234 ..      64     120 ..      62     123 .] 0.93

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.8e-08
  Tropomyosin  2 klkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeea 69
                 +l+ ++ ++d a+ r+e+a++k ++ e++++  ++E + l++++qlle+el+++ ++l+++ ekL ++
   CDO73255.1  7 RLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQL 74
                 789999***********************************************************986 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.5e-08
  Tropomyosin 178 irtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqtlaeL 234
                  +++  ekL++   Rae++Er++++Le+e dr e++ e+ +eky++ ++eLd+ +a +
   CDO73255.1  64 LKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAM 120
                  68889**********************************************988766 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9  22.3     6e-08   1.1e-05      30     138 ..       3     108 ..       1     120 [. 0.95

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 6e-08
         GAS  30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                 + Ke ++ l++ +++++k+ ++++++nk++++++  ++ e+e L+k+++  e    +l+++ + lk++ ++l++l + +e+ e +++++e+erd+++kk
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLED---ELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKK 98 
                 7899*********************************************9998...89***************************************** PP

         GAS 129 feaaiqevqq 138
                 +e++ +++++
  CDO73255.1  99 YEEMQEKYRE 108
                 ***9988765 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6  24.5   2.1e-06    0.0004      36     152 ..       6     118 ..       2     121 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.1e-06
  Jnk-SapK_ap_N  36 ElLeslasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkk 131
                    E L  l ++ ++ + ++e  ++++++ e+e +  k +++  +++++++ed++++  ++    +++++e+ r+l+++a+n++ q++rlee+ + ++k
     CDO73255.1   6 ERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISD----LKDTREKLRQLDVRAENSERQIARLEEERDRWEK 97 
                    89999999999**************999999999999999999999999999998855....5677888899999999****************** PP

  Jnk-SapK_ap_N 132 eysklheretellkklkelve 152
                    +y++ +e+++e  ++l e+v 
     CDO73255.1  98 KYEEMQEKYRESKRELDEVVA 118
                    ***********9999999985 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   9.9   0.00023     0.043      58     127 ..       4      73 ..       1      80 [. 0.60
   2 !   11.8   4.0     0.001       0.2      56      93 ..      79     116 ..      72     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00023
        ADIP  58 lnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqq 127
                 ++e+++ l+a+ +  +++ e  +++++ +e+e++l++ +   l+kk++ le+ l +   +l+ ++ +l q
  CDO73255.1   4 VKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQ 73 
                 5666666666666666666666666666666666666666666666666666666555555555555544 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.001
        ADIP  56 eslnetirkleaeierlqskierlktqleqlerelalv 93 
                 e+++++i +le e +r ++k+e +++++ +++rel+ v
  CDO73255.1  79 ENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 899*******************************9954 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  22.3   4.2e-06   0.00079     142     252 ..       2     115 ..       1     121 [. 0.92

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.2e-06
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.id..keeLeelreelaelkaeieekkkelaelqeqleeleekie 237
                 e+++e+l+ l++d++  +k+ e +++  + +e+e + l+ e e lq++++ le+ +d    +L+ +re+l++l++  e+ ++++a+l+e++++ e+k e
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDeLDkaISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYE 100
                 78999******************************************999999875622579************************************* PP

        Spc7 238 elkeqkseleeeiae 252
                 e++e+++e + e+ e
  CDO73255.1 101 EMQEKYRESKRELDE 115
                 ********9999876 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  10.4   5.1e-06   0.00097       3      71 ..      30      97 ..      29      99 .. 0.92
   2 ?    2.6   2.6       0.8   1.5e+02      36      66 ..      83     113 ..      77     121 .. 0.50

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.1e-06
      Cnn_1N  3 rEqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaek 71
                + +e++id Lk EN +L+ +++ Le++l+k  + + +++ +++ +l v+ e+ ++++ +++++ ++ ek
  CDO73255.1 30 KHYEQEIDLLKTENEGLQKKVQLLEDELDKAIS-DLKDTREKLRQLDVRAENSERQIARLEEERDRWEK 97
                679***************************999.89999999******************997666665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.8
      Cnn_1N  36 eqkeellkenielkveveslqkelkekkkll 66 
                 +q+  l++e+   + + e++q +  e k++l
  CDO73255.1  83 RQIARLEEERDRWEKKYEEMQEKYRESKREL 113
                 4444444444444445555555555544444 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   8.4   2.6e-05    0.0049      48     105 ..       2      59 ..       1      62 [. 0.92
   2 ?    6.9  10.5     0.043       8.1       4      54 ..      67     117 ..      64     122 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-05
     DUF4200  48 lkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleeklee 105
                 +k+++ l+   a    a+k+ae  + ++k++e+ei  lk+e e l+++ + le++l++
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDK 59 
                 577888888999999****************************************987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.043
     DUF4200   4 kkremfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkfl 54 
                 ++ ++++++   e+ + +i+rlee+ ++ e+++e+ +++ +e+  ++d+ +
  CDO73255.1  67 TREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVV 117
                 455566666666666666777777777777777777777777766666654 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   5.8   2.5e-05    0.0046      30      79 ..      17      69 ..       2      81 .. 0.77
   2 ?    5.2   2.8      0.13        25      44      88 ..      66     110 ..      61     121 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.5e-05
       KLRAQ 30 slkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeelevee...kkvks 79
                + ++     e++ ++ eqE+d L+  N+ L+k+v+ll +el+++    k+++ 
  CDO73255.1 17 AANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAIsdlKDTRE 69
                5556666778889999**************************88744444222 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.13
       KLRAQ  44 kseqEvdsLtFrNkqLekrvellqeeleveekkvksksknkseaq 88 
                  +++ +  L+ r +  e++++ l ee +  ekk++  +++  e++
  CDO73255.1  66 DTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESK 110
                 444555667777777777777777777777777433333222222 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  28.1   2.3e-05    0.0044       9     122 ..       3     116 ..       1     122 [. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.3e-05
         ERM   9 eleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaer 107
                 +++erL+ l+ +a++a++  + +e + + ++++   +++e e L++k + +e e ++   + +++ e+ ++l  ++++ e+++arleee++r e++ e+
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEE 101
                 6899***************************************************************************************99999999 PP

         ERM 108 Lkeeleeareaeeea 122
                 ++e+ +e ++++ e 
  CDO73255.1 102 MQEKYRESKRELDEV 116
                 999999998887765 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  12.7   0.00034     0.065       8      94 ..      32     121 ..      12     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00034
     DUF5082   8 lqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnsse......sWkGkeennydgirsnlessyqtyvdkldelidaie 94 
                  +++i+ l+ e ++l++k++ L+   ++l+++ + lk++++kl++ ++  e      +   +e++  + ++++++++y++++++lde+++a+e
  CDO73255.1  32 YEQEIDLLKTENEGLQKKVQLLE---DELDKAISDLKDTREKLRQLDVRAEnserqiARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 56666666666667777766665...45555555555555555555554444444444445566677778999*****************997 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3  24.2    0.0007      0.13      29     140 .]       4     115 ..       1     115 [. 0.92
   2 !    9.1   0.8    0.0066       1.2       1      27 [.      95     121 ..      95     123 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0007
  CENP-F_leu_zip  29 LerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkee 123
                      +  l+ + ++ +++   aE + a+ +  ++ei+ l++e + l+ +++ l  e ++   +l++ +e+  +L+ + +  e+++ ++E+e+ + +++
      CDO73255.1   4 VKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKK 98 
                     5566888889999999999999999999************************************************************9999999 PP

  CENP-F_leu_zip 124 skaaveeLqtqlkelne 140
                     +++  e+ +  ++el+e
      CDO73255.1  99 YEEMQEKYRESKRELDE 115
                     99999999988888876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0066
  CENP-F_leu_zip   1 DekkklhvlekLKeserkadsLkdkve 27 
                     +ekk ++++ek +es+r+ d +    e
      CDO73255.1  95 WEKKYEEMQEKYRESKRELDEVVAAME 121
                     9*****************998876655 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1  17.4   0.00011      0.02      76     174 ..      23     121 ..       1     123 [] 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                 HTHHHHHT-GGGT--S-SHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHHH- CS
        EzrA  76 klpeieellfeaeelldkykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsygealeelekqlenie 174
                 + +e +++ +e e +l k +   ++kk++ le+eld++ +++k+ +e+l++l    e+++ +i  l+e+ ++ +kk+++ +++y e++ el++ ++++e
  CDO73255.1  23 EAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 455666667777777778888899********************************************************************9988877 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   9.1   6.4e-05     0.012       3      84 ..      13      94 ..      11     104 .. 0.95
   2 ?    4.4   0.2      0.19        35      16      49 ..      82     115 ..      79     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.4e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  3 elaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84
                + a++an+ a++ +++ +  +q+++ +k + ++++++v+  ++++++a   ++d r++ ++L+  a++ + ++ +l++ ++ 
  CDO73255.1 13 ADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDR 94
                6699*************************************************************************99875 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  16 leqlaplsqnlentkeklseinrsveetnekvkd 49 
                 ++q+a l+++ +++++k++e++++ +e + ++++
  CDO73255.1  82 ERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                 6788889999999999999999998887776654 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.6         2   3.8e+02       5      36 ..       4      35 ..       1      45 [. 0.65
   2 ?    8.8   2.7     0.012       2.2       5      34 ..      46      75 ..      42      80 .. 0.92
   3 !   16.9   6.4   3.4e-05    0.0065       6      40 ..      82     116 ..      77     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 2
        KELK  5 LekqlrllkqEkeelqkelaeaqErlksqkke 36
                ++++l+ll+ + + ++k  + a+ + k  ++e
  CDO73255.1  4 VKERLQLLRADADAANKRAEAAEAKNKHYEQE 35
                56677788888888887666666666655554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.012
        KELK  5 LekqlrllkqEkeelqkelaeaqErlksqk 34
                L+k+++ll+ E +++  +l++++E+l++ +
  CDO73255.1 46 LQKKVQLLEDELDKAISDLKDTREKLRQLD 75
                99************************9865 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 3.4e-05
        KELK   6 ekqlrllkqEkeelqkelaeaqErlksqkkeLkda 40 
                 e+q+  l++E++  +k+++e+qE+++++k+eL + 
  CDO73255.1  82 ERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 89******************************885 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  19.8   5.4e-05      0.01     332     439 ..       1     115 [.       1     121 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.4e-05
      DUF812 332 leelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkk....ktlellpdaeeniekLqalveasaqrlvelakq...WekhR 423
                 +e+++e+++ l++++++ ++  ++ e++ k+ e+e++ +k+ene l+k+v+l +    k+++ l+d+ e +++L    e+s++++  l+++   Wek+ 
  CDO73255.1   1 MEKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEdeldKAISDLKDTREKLRQLDVRAENSERQIARLEEErdrWEKKY 99 
                 6899**********************************************987544448999999****************9999988764444***** PP

      DUF812 424 vplieeyrelkeskse 439
                 + + e+yre k + +e
  CDO73255.1 100 EEMQEKYRESKRELDE 115
                 *********9998765 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.8    0.0049      0.92     106     161 ..       3      58 ..       1      62 [. 0.94
   2 ?   12.5   9.3   0.00066      0.12     103     159 ..      63     119 ..      59     123 .] 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0049
       ATG16 106 elneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDEls 161
                 +++e lq l++ + + ++r +++ea++++ e++++ ++ e ++++k vq l DEl+
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELD 58 
                 578999************************************************97 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00066
       ATG16 103 rllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDE 159
                  l+++ e+l++l+ ++++ e+++a+le+er + e+k+++ +e+ re ++ ++++  +
  CDO73255.1  63 DLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAA 119
                 6899******************************************99998887655 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  12.3   9.7e-05     0.018     132     217 ..      33     119 ..      22     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.7e-05
     Leu_zip 132 kkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdeke.nskeiskleeklaelkldlektleektasaks 217
                 ++ei+ Lk ene L+++++ lE+++ +a+++ +  +++l++l+ ++++++ + +  ++e  + e+k +e++ ++ ++++e  +  ++
  CDO73255.1  33 EQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIArLEEERDRWEKKYEEMQEKYRESKRELDEVVAA 119
                 689************************************999777666654444245555566666666666666666655555444 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  17.9   0.00011     0.022      33     154 ..       2     118 ..       1     123 [] 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 0.00011
     DUF2353  33 eqLqerlsalkkqleeekakaadlkeekekekklsqlleesreenkalkleveeLrqklkeaqgDiklLReqlarqrlglkdedlletrhssaeereel 131
                 e+++erl+ l+  +  +++   +++  + k+k++ q +   + en+ l+++v+ L + l+ a  D k  Re+l +  +++++++  ++    +eer + 
  CDO73255.1   2 EKVKERLQLLRADADAANK---RAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSE--RQIARLEEERDRW 95 
                 5666666665555544433...33445899999*************************************99988877755554..66666799***** PP

     DUF2353 132 vkqlEklkekiqqlerdlkavld 154
                  k+ E+++ek+++ +r+l +v+ 
  CDO73255.1  96 EKKYEEMQEKYRESKRELDEVVA 118
                 ******************99875 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   4.5   0.00024     0.046      56     122 ..      24      90 ..      15      92 .. 0.89
   2 ?    2.6   0.1      0.69   1.3e+02      47      70 ..      96     119 ..      88     123 .] 0.54

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00024
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 + +a  +h +++id + ++ +  ++  + +++e++++ +dl++++e++++++   e+ e +++r+ee
  CDO73255.1  24 AAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEE 90 
                 4556678999****************************************************99997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.69
     DUF1664  47 skqleqvseslaatkrhLssridr 70 
                  k+ e+++e+ ++ kr+L + ++ 
  CDO73255.1  96 EKKYEEMQEKYRESKRELDEVVAA 119
                 455555556666666666555544 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.5      0.11        21     194     233 ..      27      66 ..       9      73 .. 0.47
   2 ?   12.9   1.6   0.00029     0.056     191     238 ..      73     120 ..      65     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.11
                 HHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH CS
      FliD_C 194 tasknltkqikdldkkiedldkrletleerlkkqfaalek 233
                  ++k ++++i+ l+++ e l+k+++ le +l k ++ l++
  CDO73255.1  27 AKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKD 66 
                 3344444444444444444444444444444444443333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00029
                 HHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH CS
      FliD_C 191 tlqtasknltkqikdldkkiedldkrletleerlkkqfaalekavskl 238
                 +l+++ +n ++qi +l+++ + ++k++e+ +e++++   +l+++v  +
  CDO73255.1  73 QLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAM 120
                 577899999***************************999999999887 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.2    0.0095       1.8      19      68 ..       3      50 ..       1      52 [. 0.69
   2 ?   13.9  14.2   0.00027     0.052       8      84 ..      41     115 ..      39     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0095
  Uso1_p115_C 19 klkaelqslskalesleqkeakkaaesqakeleaenkklekeleklrael 68
                 k k +lq l+  +  +++    +aae+++k++e+e++ l+ e e l++++
   CDO73255.1  3 KVKERLQLLRADADAANKR--AEAAEAKNKHYEQEIDLLKTENEGLQKKV 50
                 4444454444444444444..4556666*******************998 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00027
  Uso1_p115_C   8 seaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkEldD 84 
                  +e++ l++  + l++el+++ + l+++++k  + + + +a++ e ++ +le+e +  +++++e +ek++e++ Eld+
   CDO73255.1  41 TENEGLQKKVQLLEDELDKAISDLKDTREK--LRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                  677778888888888888888888888888..777788899999999999999999999999999999999999998 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.4     0.021         4      41      87 ..       3      49 ..       1      51 [. 0.77
   2 ?   14.1  10.9   0.00012     0.022      33     110 ..      44     121 ..      40     123 .] 0.93

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.021
     DUF3450 41 klddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeq 87
                k+++  q l a+  a+++++e++e++n+++e+ ++ +++e + l+++
  CDO73255.1  3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKK 49
                56666777888888888888888888888888888888888888876 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 0.00012
     DUF3450  33 aqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLe 110
                 +  qkk++ l+de ++  +++++ +e+l +l+v  e+ er++a +e+e+++ e++ ee++e  re +  l+++++++e
  CDO73255.1  44 EGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 668**********************************************************99999999999998887 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   9.1     0.011       2.1      67     127 ..       2      58 ..       1      60 [. 0.73
   2 ?   10.4  17.5    0.0026       0.5      18     108 ..      30     120 ..      29     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.011
  TPR_MLP1_2  67 nelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQlE 127
                 +++k++++ l+a+a++a++  e++e++     +++e+e++ l++  e l+++ +lL d l+
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAK----NKHYEQEIDLLKTENEGLQKKVQLLEDELD 58 
                 677888888888888888877777654....567888888888888888888888877776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0026
  TPR_MLP1_2  18 eeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelsel 108
                 +++e+++  l+++ e  ++ ++  ++   + +   +++ ++l++l  ++++ + +ia l++e+++ +++ ee +e+  e k el++ ++ +
  CDO73255.1  30 KHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAM 120
                 6899999999999999999999999999999999999999999999999999999999999999999999999999999999999877766 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.0     0.074        14      61     101 ..      33      73 ..       1      76 [. 0.82
   2 ?   11.9   7.4   0.00085      0.16      62     101 ..      69     108 ..      64     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.074
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  61 eevkeeLeerketlekeiktlekqleklekeleelkeelqk 101
                  e+ ++ L+++ e l+k+++ le++l+k   +l++ +e+l++
   CDO73255.1  33 EQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQ 73 
                  55667799999999999999999999999999999999997 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00085
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  62 evkeeLeerketlekeiktlekqleklekeleelkeelqk 101
                  e + +L+ r+e+ e +i++le++ ++ ek++ee++e+ ++
   CDO73255.1  69 EKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRE 108
                  556799******************************9986 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4    0.0016       0.3      22      89 ..       6      73 ..       2      79 .. 0.84
   2 ?    7.5   1.1    0.0099       1.9      45      88 ..      78     121 ..      71     123 .] 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0016
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHH CS
       APG17 22 elltsarqeleeavkllakteflrdglkqQlkllekirkslerklekgkeefkdlikeldaanerLek 89
                e l+  r + + a+k ++ +e   ++++q+++ll++ +++l++k++ +++e+++ i++l++  e+L++
  CDO73255.1  6 ERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQ 73
                66777788888888899999999999999999999999999999999999999999999999999875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0099
                 HHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHH CS
       APG17  45 rdglkqQlkllekirkslerklekgkeefkdlikeldaanerLe 88 
                  ++ ++Q++ le+ r+  e+k+e+++e++++  +eld++ +++e
  CDO73255.1  78 AENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 56788999999999999999999999999999999999988775 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  15.8   0.00029     0.055      19     139 ..       7     117 ..       2     123 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00029
                 HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH CS
        SHE3  19 nlqLtqqsq.eLleklelaqkkeskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvq 116
                  lqL + +     ++ e a++k++ + +++  lk EN+ L+       ++++ le+el +  +   + +++  ql+ r+ens+ + ++leee +r + +
  CDO73255.1   7 RLQLLRADAdAANKRAEAAEAKNKHYEQEIDLLKTENEGLQ-------KKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKK 98 
                 55555444404456788899999999999**********95.......789999999999999999999999*************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3 117 YdalvdsqkeYkehYqqeieeLk 139
                 Y+ +   q++Y+e  ++e++e  
  CDO73255.1  99 YEEM---QEKYRES-KRELDEVV 117
                 *965...8888875.56666655 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.1    0.0052      0.98      10      81 ..      10      78 ..       1      90 [. 0.46
   2 ?   10.4   2.1    0.0032       0.6      14      67 ..      63     116 ..      62     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0052
     BLOC1_2 10 yleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeav 81
                +l+a+ +a+++  +  e+ N++ +++++ lk++ ++l+kk++ l+    el++ ++ +++  +++++L   +
  CDO73255.1 10 LLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLED---ELDKAISDLKDTREKLRQLDVRA 78
                4444444444444444444444444444444444444444444444...44444444444444444444444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0032
     BLOC1_2  14 eleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqi 67 
                 +l+ t+e+++ L    e+++++++ l+++ +  ekk e+++eky e +  l+++
  CDO73255.1  63 DLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 78889999999999999999************************9999999886 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  30.2    0.0018      0.34      12     126 ..       2     120 ..       1     122 [. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0018
      APG6_N  12 eeldkqleqaekerdaYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyn 106
                 e+++++l+ ++++ da ++  +  ++++k+ e+     ++e e l+++++ le+e +++++ Lk++ ++ ++l+   ++ e++ ++leee +r  ++y 
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQeidlLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYE 100
                 566666666666666666666666666655555667777777888888888888888888888888888888888888888888888888888888888 PP

      APG6_N 107 elqlelleleeeldsleaqy 126
                 e q +  e + eld + a++
  CDO73255.1 101 EMQEKYRESKRELDEVVAAM 120
                 88888888888888776665 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  20.5   0.00049     0.093     475     587 ..       3     112 ..       1     122 [. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
        HOOK 475 seeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeqleelepklssnkqk 573
                 + +e+l+ l +  + an+r +  e +n+  +q i  L+++ e lqk+ q  + + +      ++l+   ekl++++   ++ + q+  le++ +   +k
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDK---AISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKK 98 
                 558999999***************************************998888886...678899999999999999999999*************** PP

        HOOK 574 ieeleeaLkkkded 587
                  ee++e+ ++  ++
  CDO73255.1  99 YEEMQEKYRESKRE 112
                 *****998765444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.6   0.00055       0.1       8      90 ..      19     107 ..      12     121 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00055
       TMPIT   8 ekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk......eeeeeeveelkeelkerkkvlkevesllp 90 
                 +k++++ e+++k+y+q+++ l++ ++ ++k+++  + +l +  s+lk+++++++      e++e+++++l+ee ++++k  +e+++   
  CDO73255.1  19 NKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRqldvraENSERQIARLEEERDRWEKKYEEMQEKYR 107
                 56666666677777777777777777777777777766666666666666664445555566666777777777777777777766543 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  13.7   0.00099      0.19     213     311 ..      10     117 ..       1     122 [. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00099
       IFT57 213 v.............tikadakdWrahleqmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlse 298
                                 +a++k ++++++ +k+ +++++++++ ++ +l+k  +d++ t ek+ +    l+ + e++ ++   ++ee +  ++ky++++e
  CDO73255.1  10 LlradadaankraeAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQ----LDVRAENSERQIARLEEERDRWEKKYEEMQE 104
                 4444445555555334788899999999999999999999999999999999999999999876....4455555555666667777777788888888 PP

       IFT57 299 gvseltrelaeis 311
                 +  e +rel+e+ 
  CDO73255.1 105 KYRESKRELDEVV 117
                 8888888887775 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.4     0.012       2.2      19      63 ..      22      66 ..       6      74 .. 0.72
   2 ?    8.6   5.7     0.012       2.3      23      69 ..      75     121 ..      66     123 .] 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.012
         CLZ 19 aakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkq 63
                a++a+a++k  e+ ++ L+++ e Lq++++ L +e++++ + Lk 
  CDO73255.1 22 AEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKD 66
                456667888888888888888888888888888888877777765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.012
         CLZ  23 gaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkLE 69 
                    +++ e+++ rLe++ +  +++++ + ++y +s+r+L + ++++E
  CDO73255.1  75 DVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 46778999999*************************99999999888 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   8.3   0.00094      0.18      16      99 ..      33     112 ..      25     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00094
  Syntaxin_2  16 eklvkqLgtkkdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekq 99 
                 e+ ++ L+t   +e l++k++ l +e+ + i++ ++  +kl qld   ++s    q ++L ++  +  ++++++q++y+e +++
  CDO73255.1  33 EQEIDLLKTE--NEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENS--ERQIARLEEERDRWEKKYEEMQEKYRESKRE 112
                 6666667775..778888888888888888877777777777777777643..44779***********************997 PP

>> DUF730  Protein of unknown function (DUF730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.6    0.0084       1.6      74     120 ..       2      48 ..       1      52 [. 0.90
   2 ?    8.4   2.9     0.011       2.1      69     120 ..      53     104 ..      49     107 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0084
      DUF730  74 dkikeektemkkdleaakkrvesqaekiflmekkfetlekkyeslnk 120
                 +k+ke  + ++ d +aa+kr e+   k    e++++ l+ + e l+k
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQK 48 
                 689********************999999999999999998888876 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.011
      DUF730  69 lcdefdkikeektemkkdleaakkrvesqaekiflmekkfetlekkyeslnk 120
                 l de+dk   + ++ ++ l   + r e+   +i  +e++ +  ekkye +++
  CDO73255.1  53 LEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQE 104
                 679*****9***************************************9975 PP

>> HMMR_C  Hyaluronan mediated motility receptor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.6      0.19        35      92     128 ..      38      74 ..       6      78 .. 0.74
   2 ?   13.3   4.9   0.00041     0.077       6      51 ..      73     118 ..      67     123 .] 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.19
      HMMR_C  92 klkeenselkqevsklrsqlakekqeekklkeqlkea 128
                  lk en+ l+++v  l   l k  ++ k+ +e+l+++
  CDO73255.1  38 LLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQL 74 
                 4788888888888888888888888888888887765 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00041
      HMMR_C   6 eeeqrkaekeetldelkeevkkWrklyeellnkvkPfqeqldafea 51 
                 + + r  ++e++++ l+ee ++W k yee+++k +  ++ ld   a
  CDO73255.1  73 QLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVA 118
                 4556777899999***************************998766 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   3.2      0.33        62      29      60 ..       2      33 ..       1      35 [. 0.83
   2 ?    7.6   6.7     0.015       2.8       4      50 ..      26      72 ..      21      79 .. 0.58
   3 ?   10.7   5.1    0.0016       0.3       8      47 ..      79     118 ..      74     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.33
                TSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHH CS
        GrpE 29 kelkekllrllaefenlrkrtekekeeakkfa 60
                +++ke+l+ l+a+++ ++kr+e   ++ k ++
  CDO73255.1  2 EKVKERLQLLRADADAANKRAEAAEAKNKHYE 33
                67899999999999999999999888888876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.015
                ...CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHH CS
        GrpE  4 eeeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrte 50
                e ++++ e+e++ l++e e l+k+v+ l+++l+++  +++  r++++
  CDO73255.1 26 EAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLR 72
                34445555556666666666666666666666666666666665544 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0016
                 TTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHH CS
        GrpE   8 eeeedeeeeleeeleelekevkelkekllrllaefenlrk 47 
                 e+ e +++ leee ++ ek+++e++ek+ +++ e++++  
  CDO73255.1  79 ENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVA 118
                 678899999*************************998765 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8    0.0018      0.33      69     107 ..      30      68 ..      11      76 .. 0.89
   2 ?    2.9   0.2      0.46        88      68     105 ..      78     115 ..      66     121 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0018
    Lectin_N  69 sstlaeiqalssqggslsekvtsleaklekkqqdlkadh 107
                 ++ + ei  l+++++ l++kv+ le +l+k   dlk   
  CDO73255.1  30 KHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTR 68 
                 67899****************************999765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.46
    Lectin_N  68 ssstlaeiqalssqggslsekvtsleaklekkqqdlka 105
                 +++ + +i  l+ + +++++k + ++ k ++ +++l++
  CDO73255.1  78 AENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                 45666777777777777777777777777777777765 PP

>> Cir_Bir_Yir  Plasmodium variant antigen protein Cir/Yir/Bir
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.9    0.0012      0.22     105     191 ..      27     111 ..      14     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0012
  Cir_Bir_Yir 105 ennekYkkkindvteyknykdlIdkkkelmnidi.kdiskfYdafklLCnmyteldekksnckkylekaneFvekYkelnndsnitkd 191
                   +n++Y+++i+     k+ ++ ++kk +l++ +  k is + d  ++L ++    ++++ +  ++ e+ + + +kY+e+++++  +k 
   CDO73255.1  27 AKNKHYEQEIDLL---KTENEGLQKKVQLLEDELdKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKR 111
                  57899*9999887...678899999999999766367*******************************************99987664 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.4    0.0053         1     136     185 ..       2      50 ..       1      52 [. 0.81
   2 ?    7.8   7.6     0.015       2.9     116     158 ..      73     115 ..      66     121 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0053
  Ax_dynein_light 136 eelekqvaelkaklealekrekerrqeeekkheeeieflkksnqqlkeql 185
                      e+ +++++ l+a ++a++kr++   ++++k +e+ei+ lk +n+ l++++
       CDO73255.1   2 EKVKERLQLLRADADAANKRAE-AAEAKNKHYEQEIDLLKTENEGLQKKV 50 
                      5678888889999998888865.56778899999*********9998765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.015
  Ax_dynein_light 116 qaeqgkselekkikeLeeekeelekqvaelkaklealekreke 158
                      q + + ++ e++i++Leee+++ ek+ +e+++k+++++++  e
       CDO73255.1  73 QLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                      4455667788889999999999999999999999999987666 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  17.2    0.0015      0.28     701     812 ..       5     116 ..       1     122 [. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
         FPP 701 ksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleaelnelkqkieaLeveLeeekksheele 799
                 k + + l ++   a+++ e++ a+ +  Eq ++ lk+e e l++  +l+e++l++     ++   ++++l+   ++ +++i +Le+e +  +k +ee +
  CDO73255.1   5 KERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQ 103
                 555555667777888888888888889999999999999999999999998888888888888888888888888888888888888888888888888 PP

         FPP 800 akckelqeqlerv 812
                  k++e +  l+ v
  CDO73255.1 104 EKYRESKRELDEV 116
                 8888888877654 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.6      0.75   1.4e+02      56      76 ..      46      66 ..       3      75 .. 0.57
   2 ?    9.8   0.2    0.0048      0.91      51      82 ..      90     121 ..      84     123 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.75
                HHHHHHHHHHHHHHHHHHHHH CS
      WXG100 56 wkqaaqklvdaLeeisealkq 76
                +++++q l d+L++  + lk 
  CDO73255.1 46 LQKKVQLLEDELDKAISDLKD 66
                333333344444444444444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  51 aefeewkqaaqklvdaLeeisealkqaanafe 82 
                 +e ++w ++ +++++++ e  ++l+++ +a+e
  CDO73255.1  90 EERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 66789*********************999998 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.6      0.21        41      92     132 ..      16      56 ..       1      63 [. 0.63
   2 ?   12.6  11.1   0.00057      0.11      81     146 ..      54     119 ..      49     123 .] 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.21
     UPF0242  92 eelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaed 132
                   ++++ e  + + ++ e+e+  lk en+ Lq+k +    +
  CDO73255.1  16 DAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDE 56 
                 34455555555667778888888888888888887765554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00057
     UPF0242  81 deglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLae 146
                 +++l++    l++ +e+ ++L  + ++ e++++rl+ee    ++k e+++e + e+k+el+e +a 
  CDO73255.1  54 EDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAA 119
                 556777777999999999999999**************************************9875 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   4.1       0.6   1.1e+02      69      98 ..       2      31 ..       1      35 [. 0.75
   2 ?   13.7  16.1   0.00023     0.044      66     145 ..      34     115 ..      32     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.6
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO 69 ekvkqqvalLrekeaelekqveeakqqlea 98
                ekvk++++lLr+      k++e a+++ ++
  CDO73255.1  2 EKVKERLQLLRADADAANKRAEAAEAKNKH 31
                899999999999888888887777776655 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHGGG CS
        YscO  66 kelekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraeasrqqe..rkEeqelEE 145
                 +e++ +k +   L++k++ le+++++a   l+  re+lrq+ +  ++ +r+ ++++e+ +++++  +  qe  r   +el+E
  CDO73255.1  34 QEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEkyRESKRELDE 115
                 79************************************************************98644433310344455555 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.3   0.00077      0.15      57     110 ..       5      60 ..       1      65 [. 0.85
   2 ?    5.2   6.5      0.11        20      71     109 ..      77     115 ..      62     122 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00077
     DUF4337  57 leqlelllkak..aeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdea 110
                 +e+l+ll++ +  a++ a+a+++k+++y+++i+  k+e + ++kk + le+e d+a
  CDO73255.1   5 KERLQLLRADAdaANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKA 60 
                 5667777666667888899999******************************9997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.11
     DUF4337  71 laaavdkkiakykkkiarykkekkeikkkAkeleaerde 109
                  a++ +++ia+++++ +r++k+ +e+++k +e ++e de
  CDO73255.1  77 RAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                 234445555666666666666666666665555555555 PP

>> DUF5631  Family of unknown function (DUF5631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0053         1      22      54 ..      18      50 ..       2      54 .. 0.86
   2 ?    1.7   0.2       1.8   3.4e+02       2      52 ..      55     104 ..      54     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0053
     DUF5631 22 vhtlakaaaagtgvldeEvdllrehldtirkqv 54
                +++ a+aa+a++   ++E+dll+++ + ++k+v
  CDO73255.1 18 ANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKV 50
                667799*****************9999888876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 1.8
     DUF5631   2 delgvelseatrrrdgLPrlvhtlakaaaagtgvldeEvdllrehldtirk 52 
                 del +++s+   +r++L +  ++ a+ ++++ + l+eE d   ++ +++++
  CDO73255.1  55 DELDKAISDLKDTREKLRQ-LDVRAENSERQIARLEEERDRWEKKYEEMQE 104
                 7888889999999999955.5777899999999999999999988888776 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.4     0.041       7.7      21      73 ..       8      60 ..       2      61 .. 0.84
   2 ?    7.6  15.5     0.019       3.7      13      71 ..      35      93 ..      34     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.041
  TMF_DNA_bd 21 GekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkea 73
                ++ L++  ++ n+      +knk+ e+ei+ lk ++e l+k+++ le++l++a
  CDO73255.1  8 LQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKA 60
                56677777777888888899*****************************9986 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.019
  TMF_DNA_bd 13 qIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlk 71
                +I+ L++E e L+kk + l+  ++k  +++k++ +++++l+ + e++e+++++lee+ +
  CDO73255.1 35 EIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERD 93
                79999999999999999999999999999999999999999999999999999998765 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.2     0.056        11       6      48 ..       2      44 ..       1      45 [. 0.93
   2 ?    8.6   1.8      0.01       1.9       1      45 [.      46      90 ..      45      90 .. 0.93
   3 ?   10.3   0.9    0.0031      0.58       2      36 ..      82     116 ..      81     123 .] 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.056
                HHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
        Swi5  6 keleeqleelekelaelkeelkekkdpeetvkrhIklLheYNE 48
                ++++e+l+ l+++ ++++++ ++ +++++  ++ I+lL++ NE
  CDO73255.1  2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENE 44
                68899999999**********9999**************9998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.01
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
        Swi5  1 leaeikeleeqleelekelaelkeelkekkdpeetvkrhIklLhe 45
                l+++++ le++l++  ++l++++e+l++ +  +e  +r+I +L e
  CDO73255.1 46 LQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEE 90
                689999*********************999999999****99976 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekkdpeetv 36 
                 e++i++lee+ +++ek+++e++e+++e k   ++v
  CDO73255.1  82 ERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 579**********************9877555544 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  12.4    0.0015      0.28       5      84 ..       5      85 ..       2      90 .. 0.91
   2 ?    5.1   3.4      0.12        23      50      86 ..      82     115 ..      75     121 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0015
       Mod_r  5 keeLqelledeeklealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqel 84
                ke Lq l  d ++ +++++ +  + k +++e + l +ene l +k   le+el++  s+l++++e+l++l  + e+ e++ 
  CDO73255.1  5 KERLQLLRADADAANKRAEAAeAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQI 85
                789999999*********9997779*****************9987777**********************9999999886 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.12
       Mod_r  50 lslepeleelrselqekleelkelekefeekeqelde 86 
                   +  +lee+r++ ++k+ee++   ++++e ++elde
  CDO73255.1  82 ERQIARLEEERDRWEKKYEEMQ---EKYRESKRELDE 115
                 3334466666666666666555...444444444444 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  16.2    0.0046      0.86     117     221 ..      18     115 ..       2     122 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0046
     DUF4407 117 qeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.atarlaa 214
                 +++ +e+ e  ++++++e++ l+++++ lq++++ +e++ld++  ++++  +          +    +a++ ++q++++++e + +++k +  +++  +
  CDO73255.1  18 ANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREK--------LRQLDVRAENSERQIARLEEERDRWEKKYEeMQEKYRE 108
                 22222222333334777777777777777777777777777777777766553........44456677777777777777777777775544444555 PP

     DUF4407 215 lraelae 221
                  ++el+e
  CDO73255.1 109 SKRELDE 115
                 5555444 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.5    0.0016      0.31     379     434 ..      34      90 ..      26      93 .. 0.85
   2 ?    4.0   1.1     0.075        14     379     410 ..      83     114 ..      73     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0016
  Herpes_UL6 379 dtiekLkkenelllkklkelekeLerlreeakk.eakarevdlltsstdaslenlpe 434
                 ++i+ Lk+ene l+kk++ le+eL+++ ++ k    k r+ d+ +++  +++ +l e
  CDO73255.1  34 QEIDLLKTENEGLQKKVQLLEDELDKAISDLKDtREKLRQLDVRAENSERQIARLEE 90 
                 58999*********************9777666677889999999999998888855 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.075
  Herpes_UL6 379 dtiekLkkenelllkklkelekeLerlreeak 410
                  +i +L++e++ ++kk +e++++ +++++e  
  CDO73255.1  83 RQIARLEEERDRWEKKYEEMQEKYRESKRELD 114
                 5899******************9999977654 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5       2.1   3.9e+02      24      45 ..      13      34 ..       1      37 [. 0.43
   2 ?    9.7   3.5    0.0077       1.4       3      40 ..      34      72 ..      32      83 .. 0.83
   3 ?    9.8   3.6    0.0073       1.4       3      36 ..      83     117 ..      81     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 2.1
  Rho_Binding 24 eelekakeeeeeieklkasyek 45
                  +  +a++ +e  e  +++ye+
   CDO73255.1 13 ADADAANKRAEAAEAKNKHYEQ 34
                 4444444333333333334444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0077
  Rho_Binding  3 kdvenlakekeelnkklkkleeelekak.eeeeeieklk 40
                 ++++ l++e+e l+kk++ le+el ka  + ++  ekl+
   CDO73255.1 34 QEIDLLKTENEGLQKKVQLLEDELDKAIsDLKDTREKLR 72
                 678899*******************99966777777777 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0073
  Rho_Binding   3 kdvenlakekeelnkklkkleeelekak.eeeeei 36 
                   +++ l++e++ ++kk ++++e++++ k e +e +
   CDO73255.1  83 RQIARLEEERDRWEKKYEEMQEKYRESKrELDEVV 117
                  57899*********************994444444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  12.4    0.0041      0.78     361     463 ..      12     116 ..       1     122 [. 0.60

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0041
      AAA_13 361 kakiesikklvaeineliakhNekvanleeekeeakkklelhl..veeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdek 457
                  a++++++k  +++++  + + + ++ l++e e ++kk++l +  + ++ s+l+   +k+++l+  +e+ e++++  e+e    e++ +e++++ r+ k
  CDO73255.1  12 RADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEdeLDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESK 110
                 344445566666666666666666666777777776666664322555555555555666777777777777777777777777777777777777776 PP

      AAA_13 458 paaeei 463
                 +  +e+
  CDO73255.1 111 RELDEV 116
                 666665 PP

>> PEARLI-4  Arabidopsis phospholipase-like protein (PEARLI 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  13.1    0.0034      0.64     179     258 ..      25     106 ..      15     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0034
    PEARLI-4 179 vea.vkyyde.qetavvEKevkerdvllkkqEmekqekelaekEKeikevrekvtemaaklgelemkrarlekrlaflssKv 258
                 +ea  k+y++  +  ++E e  +++v+l  +E++k   +l+    +++++  + ++ + +++ le +r r ek+++ ++ K 
  CDO73255.1  25 AEAkNKHYEQeIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKY 106
                 454236776526889************************************************************9999886 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.7     0.091        17      29      86 ..      23      73 ..       7      80 .. 0.47
   2 ?    6.6   0.1      0.05       9.4      21      78 ..      64     121 ..      60     123 .] 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.091
      DUF948 29 deaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86
                ++a+a  ++ e+++d + +e e+l +kv+          +++d+ ++ ++d+ e++++
  CDO73255.1 23 EAAEAKNKHYEQEIDLLKTENEGLQKKVQL-------LEDELDKAISDLKDTREKLRQ 73
                333333344444444444444444444444.......444444444444444444333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.05
      DUF948  21 llklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteava 78 
                 l+  ++ l+++  + e+ e+q+  + +e ++  +k +e++e  +e   ++d++++a++
  CDO73255.1  64 LKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                 5566777788888888888999999999999999999999999999999999999976 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.1    0.0037       0.7      33      63 ..      20      50 ..       2      51 .. 0.87
   2 ?   11.5   4.7    0.0013      0.24      29      58 ..      30      59 ..      20      65 .. 0.85
   3 ?    8.4   2.7     0.012       2.3      27      61 ..      42      73 ..      40      76 .. 0.83
   4 ?    3.0   4.0      0.58   1.1e+02      26      62 ..      69     105 ..      67     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0037
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 33 rrvkaLekeNksLkseleelkkevekLkskv 63
                +r++a e++Nk + +e++ lk e+e L++kv
  CDO73255.1 20 KRAEAAEAKNKHYEQEIDLLKTENEGLQKKV 50
                6888889999999999999999999998886 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 29 eeLerrvkaLekeNksLkseleelkkevek 58
                +  e++ + L++eN+ L+++++ l++e +k
  CDO73255.1 30 KHYEQEIDLLKTENEGLQKKVQLLEDELDK 59
                5669999******************99886 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 27 eieeLerrvkaLekeNksLkseleelkkevekLks 61
                e e L+++v+ Le e     + ++ lk+++ekL++
  CDO73255.1 42 ENEGLQKKVQLLEDELD---KAISDLKDTREKLRQ 73
                67889999999999866...999999999999987 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  26 aeieeLerrvkaLekeNksLkseleelkkevekLksk 62 
                 ++  +L  r++  e + + L +e ++ +k++e++++k
  CDO73255.1  69 EKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEK 105
                 5667888888888888888999999999999888766 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.7     0.004      0.75     117     170 ..       3      56 ..       1      59 [. 0.91
   2 ?    7.6   7.5     0.015       2.8     110     177 ..      45     112 ..      43     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.004
     DUF2968 117 asearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrq 170
                 + ++r++ L+ad + a++  +a +++ k+  +e + L++++e +q++++ l+ +
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDE 56 
                 6789******************************************99987765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.015
     DUF2968 110 qlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqaq 177
                  l+++++  e+++ +  +dl+ +r+   ++  r +++ ++ a Le++r++ +++ +++q++ r+ +++
  CDO73255.1  45 GLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRE 112
                 578899999***************************************************98887666 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.5    0.0087       1.6      21      75 ..      14      68 ..       2      73 .. 0.77
   2 ?    5.3   0.8      0.13        24      36      71 ..      78     113 ..      69     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0087
    Gp-FAR-1 21 eekaqlkevvknykgyknedellaalKkkspaLyekaeklqaklkekvdkLspea 75
                +  a+ k      +++k +++ +  lK  ++ L +k++ l+ +l++ +  L+++ 
  CDO73255.1 14 DADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTR 68
                444444444444677999*********************************9865 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.13
    Gp-FAR-1  36 yknedellaalKkkspaLyekaeklqaklkekvdkL 71 
                 ++n +  +a l +  ++  +k+e++q+k++e   +L
  CDO73255.1  78 AENSERQIARLEEERDRWEKKYEEMQEKYRESKREL 113
                 578889999999999************999865555 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.4     0.004      0.75       6      39 ..      26      59 ..      21      71 .. 0.84
   2 ?    1.8   3.6       1.7   3.1e+02      11      33 ..      80     102 ..      53     122 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.004
   FlaC_arch  6 EnklsklsteletvkkeneelsksveelkenVkd 39
                E k +  + e++ +k+ene l+k+v+ l+++  +
  CDO73255.1 26 EAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDK 59
                6667778999****************99998865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 1.7
   FlaC_arch  11 klsteletvkkeneelsksveel 33 
                 + + +++ +++e +  +k+ ee+
  CDO73255.1  80 NSERQIARLEEERDRWEKKYEEM 102
                 33333333444444444444433 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  16.9     0.012       2.3     102     183 ..      20     108 ..       1     121 [. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.012
      DUF724 102 deqtklleerkklekkieeeesekrkleeeid....elekkilelerqlallk...ekkeaadkeiarlkseaekleeeledveqeFea 183
                 ++ + ++ + k++e++i   ++e++ l+++++    el+k+i++l+  ++ l+    + e+++++iarl+ e ++ e+++e++++++++
  CDO73255.1  20 KRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQlledELDKAISDLKDTREKLRqldVRAENSERQIARLEEERDRWEKKYEEMQEKYRE 108
                 34444555566666666666666666666655777799999999999999999888888999999999999999999999999998876 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.2      0.52        98       7      58 ..       3      54 ..       1      59 [. 0.73
   2 ?   10.7   3.0     0.002      0.37       4      63 ..      49     108 ..      46     116 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.52
       Sec34  7 skeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrle 58
                + +e+++ l +++d+a++  e  e k k+ +++   l+++ e l ++ + le
  CDO73255.1  3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLE 54
                5567778888888888888888888888888888888888888877665554 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.002
       Sec34   4 qLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaee 63 
                 +++  e+e+d+ +++++++ e+L++l  + ++ + +  +l+e+ ++  ++ ++++e ++e
  CDO73255.1  49 KVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRE 108
                 556667777777777777777777777777777777777777777777777777776665 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   4.8      0.38        71      63     101 ..      15      53 ..       1      60 [. 0.68
   2 ?   11.0   9.5    0.0021      0.39      44     101 ..      59     116 ..      52     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.38
       THOC7  63 akanerereryeaekeeieseieavreeieelkaqLeea 101
                 a+a  +  e  ea++++ e+ei  +++e+e l+++ +  
  CDO73255.1  15 ADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLL 53 
                 355666677778888888999999999998888887655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0021
       THOC7  44 dllldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqLeea 101
                 ++  d+   +  +++l++ a+  er+++r+e+e+++ e++ e+++e+  e k +L+e 
  CDO73255.1  59 KAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 66778999999999*****************************************986 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  20.3      0.01         2      36     145 ..       4     114 ..       1     122 [. 0.58

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.01
        Fez1  36 lkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.aeeleel 133
                 +k +l+ lra+ ++ +++++ +e++ ++ ++e++ ++ e +  +++++ll+++++k+ ++lk++re+l++l  ++e+++ +  + +++r++ +++ ee+
  CDO73255.1   4 VKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRwEKKYEEM 102
                 445555566666666666666666666666666666666666777777777777777777777777777777666666655555555554432333444 PP

        Fez1 134 kreverlraeLk 145
                 +++  + ++eL 
  CDO73255.1 103 QEKYRESKRELD 114
                 444444444443 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.5     0.041       7.7      27      69 ..      22      64 ..       1      66 [. 0.71
   2 ?    2.4  17.5       1.1   2.1e+02      19      61 ..      35      98 ..      31     122 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.041
        ZapB 27 ieeLkeeneelkeenreleeeneqlkeereawqerlkkLLgkl 69
                 e+ +++n+ +++e++ l+ ene l++  + +++ l+k +  l
  CDO73255.1 22 AEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDL 64
                4556667777777777777777777777777777777766655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 1.1
        ZapB 19 titlLqmeieeLkeeneelkeenrele.....................eeneqlkeereawqer 61
                +i+lL+ e+e L+++++ l++e ++                       +++ +l+eer  w+++
  CDO73255.1 35 EIDLLKTENEGLQKKVQLLEDELDKAIsdlkdtreklrqldvraenseRQIARLEEERDRWEKK 98
                4555555555555555444444333334444444444444444444334444444666666555 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   9.2    0.0053      0.99      79     134 ..      18      73 ..       2      83 .. 0.72
   2 ?    2.6   7.0      0.64   1.2e+02      65      98 ..      77     111 ..      69     121 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0053
   Rootletin  79 ErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewre 134
                   +r+e  ++ n+ + ++++  +++ne L++ +q l+++++++  +l++  +++r+
  CDO73255.1  18 ANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQ 73 
                 45677888888888888888888888888888888888888888888877777665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.64
   Rootletin  65 esadleealakLeeErqrsek.laqvnslLreqle 98 
                 + ++ e+ +a+LeeEr r ek  +++ + +re   
  CDO73255.1  77 RAENSERQIARLEEERDRWEKkYEEMQEKYRESKR 111
                 55677888999999999987615566666776544 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.5    0.0052      0.98      31     126 ..       2      93 ..       1      98 [. 0.89
   2 ?    9.3   6.7    0.0066       1.2      30      88 ..      43     115 ..      37     122 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0052
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdid 126
                 ++vk++l+ l+ + + ++++ + ae   k+ ++ +   ++++++ ++ ++ +++el++ i++lk+t     +++r+L    e+ e++i++Le++ d
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDT----REKLRQLDVRAENSERQIARLEEERD 93 
                 5899*********99999999999999999999999999999989************999999875....689******************98765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0066
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkd..............ndnvikksskelee 88 
                 ++ ++k+++ le+el+++ +  k+++e  ++++   ++ +++ +                ++ +++s++el+e
  CDO73255.1  43 NEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARleeerdrwekkyeeMQEKYRESKRELDE 115
                 5555555555555555555555555555555555555544444432111110000000045555555555553 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.37        71      48      75 ..       1      28 [.       1      29 [. 0.91
   2 ?    5.8   3.1     0.074        14      25      60 ..      34      69 ..      29      77 .. 0.53
   3 ?    7.2   7.1     0.027       5.1      13      70 ..      64     121 ..      53     123 .] 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.37
  TolA_bind_tri 48 leqleerQrdlYldlDerlrkleaggaa 75
                   +e+++er + l  d D+  ++ ea++a+
     CDO73255.1  1 MEKVKERLQLLRADADAANKRAEAAEAK 28
                   6899*******************99876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.074
  TolA_bind_tri 25 qqlealqqelreLRGqiEelqyqleqleerQrdlYl 60
                   q+++ l++e   L+ +++ l+ +l++++   +d  +
     CDO73255.1 34 QEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTRE 69
                   445555555555555555555555555555544443 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.027
  TolA_bind_tri  13 learsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkle 70 
                    l+   + l +l  + e+ ++++++L  + ++ + + e+++e+ r+  ++lDe+++++e
     CDO73255.1  64 LKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                    555567888999999**************************************99988 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   9.2    0.0078       1.5      19     103 ..      26     117 ..       2     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0078
  V_ATPase_I  19 nafqrkfvkevrrc....demerklrfleeeieklekavikeeea....eesleapeekeldeleeelekleeelkelnenleklkkelnelv 103
                 +a ++++ +e+  +    + +++k+++le+e++k +    k++++     + +++++e+++ +leee ++ e++ +e++e++++ k+el e+v
  CDO73255.1  26 EAKNKHYEQEIDLLktenEGLQKKVQLLEDELDK-AISDLKDTREklrqLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVV 117
                 4556666666643311114578888888888888.4444444443455567777778888888888888888888888888888777777665 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.1      0.52        98       6      32 ..       9      35 ..       1      38 [. 0.79
   2 ?    9.3   1.5     0.006       1.1       2      27 ..      33      58 ..      32      67 .. 0.86
   3 ?    8.7   7.2    0.0093       1.8       1      52 [.      57     111 ..      57     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.52
  Cep57_CLD_2  6 ktLqnrLdsltrklqvheeelkrLnkE 32
                 + L+ + d ++ +++++e  +k+  +E
   CDO73255.1  9 QLLRADADAANKRAEAAEAKNKHYEQE 35
                 4469999999*********99997776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.006
  Cep57_CLD_2  2 eaevktLqnrLdsltrklqvheeelk 27
                 e+e+  L+++++ l+ k+q  e+el+
   CDO73255.1 33 EQEIDLLKTENEGLQKKVQLLEDELD 58
                 7999999************9998875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0093
  Cep57_CLD_2   1 LeaevktL...qnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLka 52 
                  L+ +++ L   +++L +l+ +++  e  ++rL  ERd+ +++  +  e  +e k+
   CDO73255.1  57 LDKAISDLkdtREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKR 111
                  68889999999***************************99986554444444444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  21.9    0.0086       1.6     603     714 ..       3     113 ..       1     121 [. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0086
     DUF3584 603 eLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeqqk 701
                 +++erlq l  + ++a++++++ae++ k+ ++e++ +k + +  +++++  +d+l ++ +  +  ++kl +++  r ++ e+q+  l+++ +  e++ +
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKL-RQLDVRAENSERQIARLEEERDRWEKKYE 100
                 679999999999999999999999999999999999999999999999999999999998887776666.67899999999999999999999999999 PP

     DUF3584 702 aaleelkedlsee 714
                 +++e+ +e ++e 
  CDO73255.1 101 EMQEKYRESKREL 113
                 9999999999886 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.9     0.042       7.9      80     133 ..       2      55 ..       1      60 [. 0.89
   2 ?    7.5   7.5     0.016         3      91     136 ..      62     107 ..      53     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.042
     DUF4201  80 thlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkq 133
                 + +ke+l+ l++   +++k+ +  e++ +++++e+  +k+e++ l+k+ + l++
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLED 55 
                 6799***************************************99999877665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.016
     DUF4201  91 selselkkelkekeerlaklrkelykvklerdklrkqneklkqqgg 136
                 s l++ +++l++++ r +  ++++ ++++erd+ +k++e+++++  
  CDO73255.1  62 SDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYR 107
                 678899999*******************************999865 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.7      0.32        61      14      49 ..      30      65 ..       2      81 .. 0.62
   2 ?    8.8   4.6      0.01       1.9       9      53 ..      74     116 ..      66     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.32
       Spc24 14 sdleselesleselaelkeeleeleeeseekeserv 49
                ++ e+e++ l++e + l+++++ le+e  +  s+++
  CDO73255.1 30 KHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLK 65
                455666666666666666666666665555222222 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.01
       Spc24   9 iakelsdleselesleselaelkeeleeleeeseekeservedet 53 
                 +   +++ e+++ +le+e +++++++ee++e+  e+++e+  de+
  CDO73255.1  74 LDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKREL--DEV 116
                 5556778899999999999999999999999999944444..555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  19.0     0.036       6.7      30     140 ..       7     106 ..       1     116 [. 0.41

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.036
       Atg14  30 rlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...........kRrsd 117
                 rl+ l+++ ++  k+ e+a+++++          +  + +++lk++ + l++++q+l+d l++  + ++++++kl++l+               +    
  CDO73255.1   7 RLQLLRADADAANKRAEAAEAKNK----------HYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAEnserqiarleeE---- 91 
                 555555555555555555555444..........4455555555555555555555555555555555555555555544433212111111110.... PP

       Atg14 118 leslqneleerrkkqiaklqdai 140
                         + r +k+ +++q+++
  CDO73255.1  92 --------RDRWEKKYEEMQEKY 106
                 ........111112222222222 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   8.5      0.51        95      33      89 ..       8      64 ..       1      70 [. 0.51
   2 ?    5.5   9.0     0.092        17       8      69 ..      25      86 ..      19      87 .. 0.87
   3 ?    9.7   8.9    0.0045      0.86       5      57 ..      64     116 ..      53     123 .] 0.58

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.51
        BRE1 33 klrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrkl 89
                ++ l a+ + a +   aa+ + +  e+e+  L++ ++  +++++ L++   + ++ l
  CDO73255.1  8 LQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDL 64
                555555555555555555555555666666666655555555555555333333333 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.092
        BRE1  8 lekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69
                 e+  +  +++++ +++e + l++k++ le e +ka    ++++ + ++l+    +  ++++
  CDO73255.1 25 AEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIA 86
                577788889999999*************************9999999999988888877776 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0045
        BRE1   5 Lvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdal 57 
                 L++  +  ++l+  +++   ++++lee+  r+e++ ++ ++ky + +r+ d +
  CDO73255.1  64 LKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 44445555556666666666666666666666666666666666666666655 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.6      0.15        29      47      97 ..      17      60 ..       1      63 [. 0.51
   2 ?   11.1  12.9    0.0016      0.31      52     111 ..      57     116 ..      55     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.15
       DHR10 47 aelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerl 97
                a  ++ e a++k k+ +++++ +++e + l++k ++l+  l       +++
  CDO73255.1 17 AANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDEL-------DKA 60
                33344444555555555555555555555555555555555.......443 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0016
       DHR10  52 leeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakar 111
                 l++a ++lk++r++l ++  +++  er+++rl+   +++e+k+e ++e+ +e +++ ++ 
  CDO73255.1  57 LDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 67888999***************************************9999999887765 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.3     0.016         3      37      81 ..      19      63 ..       1      68 [. 0.81
   2 ?    7.0   3.0     0.029       5.4      29      80 ..      66     118 ..      61     121 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.016
     DUF4446 37 gkdgksleellkekleeveelkeeseelekeieeleeklkkslqk 81
                +k+++  e + k++ +e++ lk+e+e l+k+++ le++l+k+++ 
  CDO73255.1 19 NKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISD 63
                567788889999999************************999876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.029
     DUF4446  29 kkykklmk.gkdgksleellkekleeveelkeeseelekeieeleeklkkslq 80 
                 +  +kl + + ++++ e+++++  ee ++ +++ ee++++++e +++l++ + 
  CDO73255.1  66 DTREKLRQlDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVA 118
                 44444444234788899999999999999999999999999999988887765 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.2     0.022       4.2      56     147 ..      22     117 ..       2     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.022
  HAUS-augmin3  56 ie..psdlkq..edvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavL 147
                    e  + ++k+  ++ +ll+ + e ++++++ Le+el+++ +  +   ++l +L+v a + +++  +leee +  +kk +e qe+ r+   e+++v 
    CDO73255.1  22 AEaaEAKNKHyeQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVV 117
                   4433333333568899999999999************************************************************99999988876 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   6.5       0.6   1.1e+02      42      87 ..      24      70 ..       1      74 [. 0.54
   2 ?    9.7   4.7    0.0063       1.2      48      92 .]      59     103 ..      54     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.6
    bZIP_Maf 42 akscrkrrlqq.keelekekeeleeelerlqqelsrlrqekdalkrk 87
                a++++++  +q  + l++e+e l+++++ l+ el+ +   + + ++k
  CDO73255.1 24 AAEAKNKHYEQeIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREK 70
                33333343333134445555556666666666666555555555555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0063
    bZIP_Maf  48 rrlqqkeelekekeeleeelerlqqelsrlrqekdalkrkneqlq 92 
                 + +++ ++++++ ++l  + e+++++++rl++e+d++ +k+e++q
  CDO73255.1  59 KAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQ 103
                 66788999999******************************9986 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  12.2     0.018       3.4      75     141 ..      28      94 ..       1      97 [. 0.86
   2 ?    4.9   2.9     0.096        18      23      50 ..      89     116 ..      83     123 .] 0.51

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.018
  PI3K_P85_iSH2  75 skeaqehEieklqenleqlksrlkelhsskekLeedlkqqkeeereleReinalkpellqLqkrkdk 141
                    +++  e+Ei+ l++ +e l+++++ l+++ +k   dlk + e+ r+l+ +  ++  ++ +L+ ++d+
     CDO73255.1  28 KNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDR 94 
                    233359***********************************************************98 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.096
  PI3K_P85_iSH2  23 skqlqekskeydqlkeeynkiseeiqlk 50 
                    +++    +k+y++++e+y + + e+++ 
     CDO73255.1  89 EEERDRWEKKYEEMQEKYRESKRELDEV 116
                    4444444556666666666666655543 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  10.9     0.017       3.3     159     250 ..      24     114 ..       1     123 [] 0.30

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.017
  Exonuc_VII_L 159 aikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklkerle.lleekkerle 250
                   a++ + ++ +q+++ l+++ +  +++++  +++ld++ ++l+  ++++l++   r e+ ++++ ++lee+++r +k  e+++ + +e+k++l+
    CDO73255.1  24 AAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKD-TREKLRQLDVRAENSERQI-ARLEEERDRWEKKYEEMQeKYRESKRELD 114
                   2222222222333333222222222222223333332222222.2222222222222222222.12222222222222222222333333333 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  14.9      0.05       9.4     175     275 ..       3      96 ..       1     108 [. 0.65
   2 ?    3.8   5.2      0.11        21     177     228 ..      68     115 ..      56     123 .] 0.53

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.05
  Fmp27_WPPW 175 lleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskelsaastsesfseldelassee 273
                  ++eRl+ l+++ +  +++ e +e k+++    +++ei+ l++e + l++k+++le+ l++  ++ ++++ e+ ++ +  a++++ ++++l+e  + ++
  CDO73255.1   3 KVKERLQLLRADADAANKRAEAAEAKNKH----YEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTR-EKLRQLDVRAENSERQIARLEE--ERDR 94 
                 57899999999999999999999999988....8999999999999999999999999998888887333.2221222222222222222222..2222 PP

  Fmp27_WPPW 274 sa 275
                  +
  CDO73255.1  95 WE 96 
                 22 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
  Fmp27_WPPW 177 eeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklef 228
                 +e l++l+ + e+ e+++ +le+++ +     ++++ee++++ +e k++l+ 
  CDO73255.1  68 REKLRQLDVRAENSERQIARLEEERDR----WEKKYEEMQEKYRESKRELDE 115
                 445556666666666666666666665....444444444444444444444 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  16.9     0.029       5.5     145     236 ..      24     115 ..       2     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.029
       GBP_C 145 skpggyklfleekdkleeeYeqeprKGvkaeevLqeflkskeaveeailqtdkaltakekeieaeqakaeaaeaekelleekqkeeeqrmea 236
                 +++++ k + +e+d l++e e   +K   +e  L + +++ +++ e + q+d  +++ e++i+  +++++  e++ e+++ek +e+++++++
  CDO73255.1  24 AAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                 45788889999999999998888888888899999999999999999999999999999999999999999999999999999988888765 PP

>> LIN37  LIN37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  10.2     0.031       5.9      72     153 ..      29     111 ..       2     114 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.031
       LIN37  72 sgelkevykLPkPdeseee.riPkpllaeerlkkekenvdkaletakakeeLlsehiarWkkirqkwkersrkneerYaesik 153
                 +++ ++  +L k +++  + ++  ++ +  +   + ++  ++l + + + e  +++iar+++ r +w+++ ++++e+Y+es +
  CDO73255.1  29 NKHYEQEIDLLKTENEGLQkKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKR 111
                 33333333333333333331333333333333444445555555566688999999*************************86 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  22.2     0.096        18      16      97 ..      31     115 ..       1     122 [. 0.70

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e....keekeqelqkkeqelqqkqqqkaqelqkkqqellkpildk 97 
                  +++  + l+++ + lq++++ +e+el+k++ +l++  +kl +     e+ e++++++e+e  +  ++k++e+q+k +e  ++ ld+
  CDO73255.1  31 HYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLrQldvrAENSERQIARLEEERDR-WEKKYEEMQEKYRESKRE-LDE 115
                 3444444556666888888888888888888888877777666888877777778888888777.777778888887664443.333 PP

>> DUF773  CDK5 regulatory subunit-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3     0.026         5     436     502 ..       2      68 ..       1      72 [. 0.93
   2 ?    6.4   2.2     0.017       3.2     443     483 ..      79     119 ..      70     123 .] 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.026
      DUF773 436 drlvasLeqklkqeeklkeklkdleekreelqeelselepkleklvkktrelkkliekelSkrykgr 502
                 +++ + L+  ++ ++  +++++++e+k++  ++e+  l+++ e l kk + l ++++k++S++ + r
  CDO73255.1   2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTR 68 
                 678899999999999999*******************************************987766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.017
      DUF773 443 eqklkqeeklkeklkdleekreelqeelselepkleklvkk 483
                 e+ ++q+++l+e++ ++e+k ee+qe+ +e++ +l+++v+ 
  CDO73255.1  79 ENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAA 119
                 56788999999999999999999999999999999999875 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       5.9   1.1e+03     131     153 ..       1      23 [.       1      35 [. 0.73
   2 ?    8.4   4.8    0.0078       1.5      97     159 ..      37      99 ..      17     101 .. 0.86
   3 ?    4.9   0.9     0.094        18      80     132 ..      71     121 ..      67     123 .] 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 5.9
  Fzo_mitofusin 131 leevqkkakllrnkaslleseLe 153
                    +e+v+++++llr  a   +++ e
     CDO73255.1   1 MEKVKERLQLLRADADAANKRAE 23 
                    68888888888888877666554 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0078
  Fzo_mitofusin  97 qelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeqy 159
                      l++  + l+++v+  e+el++ i++l+ + ekl ++  +a+    +  +le+e ++ e++y
     CDO73255.1  37 DLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEKKY 99 
                    4577888999**************************999999999999999999999999988 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.094
  Fzo_mitofusin  80 Lrlivsltsancshqvqqelsstfarlcqqvdetekeleeeikelekeiekle 132
                    Lr+  ++ ++n + q+  +l++  +r++++ +e++++ +e+ +el++ ++++e
     CDO73255.1  71 LRQ-LDVRAENSERQIA-RLEEERDRWEKKYEEMQEKYRESKRELDEVVAAME 121
                    544.4666777778876.58888888888888888888888888888887776 PP

>> AAA-ATPase_like  Predicted AAA-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.1    0.0035      0.66     102     162 ..      11      71 ..       1      78 [. 0.77
   2 ?    1.7   0.7      0.77   1.4e+02      92     127 ..      78     114 ..      70     121 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0035
  AAA-ATPase_like 102 lkeklkelekefgkkkeekslakrlkelieraaektgkkvvvLiDEYDkpilealeeeela 162
                      l++  +   k+ ++++++++  ++  +l+++ +e  +kkv +L DE Dk i ++ +++e  
       CDO73255.1  11 LRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKL 71 
                      4444555566666777799999999**************************9988776544 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.77
  AAA-ATPase_like  92 leseeeleeslkeklkelekefgkkke.ekslakrlk 127
                       e++e+  ++l+e+ +++ek++++ +e  ++ + +l 
       CDO73255.1  78 AENSERQIARLEEERDRWEKKYEEMQEkYRESKRELD 114
                      4566777788888888899888887773333344444 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.6       3.7     7e+02     105     136 ..       6      37 ..       2      42 .. 0.58
   2 ?    2.7   4.1      0.71   1.3e+02     104     140 ..      33      69 ..      24      75 .. 0.54
   3 ?   11.2   7.7    0.0018      0.33      95     142 ..      73     120 ..      69     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 3.7
       Med21 105 erikeLeeelreveeereekvkekeellkkve 136
                 er++ L ++ ++++++ e++  ++++  ++++
  CDO73255.1   6 ERLQLLRADADAANKRAEAAEAKNKHYEQEID 37 
                 56666666666666665555555555555554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.71
       Med21 104 eerikeLeeelreveeereekvkekeellkkveellr 140
                 e++i+ L++e++  +++ +    e ++  + +++  +
  CDO73255.1  33 EQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTRE 69 
                 5566666666666555555555555555555544333 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0018
       Med21  95 gigsseeeqeerikeLeeelreveeereekvkekeellkkveellrav 142
                 +++++ e+ e++i++Leee ++ e+++ee+ ++ +e  ++++e++ a+
  CDO73255.1  73 QLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEVVAAM 120
                 678999*************************************99876 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.1     0.028       5.4     256     344 ..       8      95 ..       1     103 [. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.028
        FUSC 256 laallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaa.arraerlarhrdhl 344
                 l+ l a+++a  a + aea ea+ ++ +++++ l++++e  +   +ll  +l+  +++l +++++lr+l+ ++++ +r+ +rl+  rd++
  CDO73255.1   8 LQLLRADADA--ANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENsERQIARLEEERDRW 95 
                 6666666666..77899999**************************************************99999767777799999976 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0  13.2       3.1   5.8e+02      28      81 ..      64     116 ..       1     123 [] 0.72

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 3.1
                 B-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
       DUF16  28 fkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkv 81 
                  k ++ ++L++++ + +  + qi++le++ ++ ++k +e++++    ++el++v
  CDO73255.1  64 LK-DTREKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDEV 116
                 33.566677777777777777777777777777777777777776666666655 PP

>> Med2  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  11.6     0.051       9.6      44      98 ..      43      97 ..      27     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.051
        Med2 44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrkee 98
                ++ L++k++  ++ LD   + l+d+++ + ql   +++ e++ ++ eeer r e+
  CDO73255.1 43 NEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIARLEEERDRWEK 97
                56799********************************999999999999988765 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.3      0.32        60     354     411 ..       2      53 ..       1      61 [. 0.59
   2 ?    5.6  12.6     0.027       5.2     329     410 ..      40     115 ..      26     123 .] 0.63

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.32
        FapA 354 eklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                 ek+k+++++l++  a+        +  + ++ + +++++e+  l++e + l+++++  
  CDO73255.1   2 EKVKERLQLLRA-DADA-----ANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQLL 53 
                 677777777777.2222.....234444455555677777777777777777777654 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.027
        FapA 329 gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeles 410
                   ++  l++k++ le+el +  + l++ ++k+++l+  ++      + + q+++l+e++ + ++++ee++e++ e k el++
  CDO73255.1  40 KTENEGLQKKVQLLEDELDKAISDLKDTREKLRQLDVRAE------NSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                 4555667777777777777777777777777777776333......234566666666666666666666666666655554 PP

>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.0    0.0061       1.1      62     107 ..       7      52 ..       1      55 [. 0.90
   2 ?    3.0   7.0      0.68   1.3e+02      36     107 ..      55     115 ..      55     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0061
                 .TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  62 pphtLpPeeliaahlapakkeeqeeLearlqeleaenaelaeevee 107
                 ++++L ++ ++a+++a+a ++  ++ e++++ l++en+ l+++v+ 
  CDO73255.1   7 RLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKTENEGLQKKVQL 52 
                 578999*************************************986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHCCHH-T..........TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1  36 neLDdlieeAkerreegeeeasrpevpphtLpPeeliaahlapakkeeqeeLearlqeleaenaelaeevee 107
                 +eLD+ i++ k+ re+           + +L+ +   + +  + ++ee+++ e++++e++++ +e ++e+ e
  CDO73255.1  55 DELDKAISDLKDTREK-----------LRQLDVRAENSERQIARLEEERDRWEKKYEEMQEKYRESKRELDE 115
                 6888888888888886...........456666666777777888999999999999999999998888865 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.6      0.11        21       7      46 ..       2      41 ..       1      44 [. 0.87
   2 ?    3.8   8.6      0.34        65       3      43 ..      47      87 ..      31      91 .. 0.53
   3 ?    8.5   4.3     0.012       2.2       3      40 ..      68     105 ..      66     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.11
        XhlA  7 erietkldnleervdkleekaaeaeekiknleedlkkles 46
                e+++++l  l  + d  +++a+ ae+k k  e +++ l+ 
  CDO73255.1  2 EKVKERLQLLRADADAANKRAEAAEAKNKHYEQEIDLLKT 41
                5789999999999999999999999999999999998876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.34
        XhlA  3 kerlerietkldnleervdkleekaaeaeekiknleedlkk 43
                +++++ +e +ld+  +++++  ek +  + +++n e ++++
  CDO73255.1 47 QKKVQLLEDELDKAISDLKDTREKLRQLDVRAENSERQIAR 87
                44555555555555555555555555555555555555555 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.012
        XhlA   3 kerlerietkldnleervdkleekaaeaeekiknleed 40 
                 +e+l +++ + +n e ++ +lee  ++ e+k ++++e+
  CDO73255.1  68 REKLRQLDVRAENSERQIARLEEERDRWEKKYEEMQEK 105
                 79*******************************99986 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.4      0.06        11      15      79 ..       4      74 ..       1      77 [. 0.51
   2 ?    8.5   5.9     0.016       3.1      10      74 ..      59     118 ..      51     123 .] 0.45

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.06
     DUF2203 15 lkelleelralrkeleeleeeleeakaeaekse.......aaeleaeleeleaeieelveeieelGvevkdl 79
                +ke+l+ lra ++ +++++e+ e++++++ ++e        + l+++++ le+e++++++ ++++  ++++l
  CDO73255.1  4 VKERLQLLRADADAANKRAEAAEAKNKHY-EQEidllkteNEGLQKKVQLLEDELDKAISDLKDTREKLRQL 74
                44555444444444444333333333333.333344445566677777777777777777777666666555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.016
     DUF2203  10 alLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGv 74 
                 + +  lk++ e+lr+l  ++e+ e+++++ ++e     + + e+++ee++++++e  +e++e+ +
  CDO73255.1  59 KAISDLKDTREKLRQLDVRAENSERQIARLEEE-----RDRWEKKYEEMQEKYRESKRELDEVVA 118
                 344444444444444444444444444444444.....444444555555555555444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3008  (0.167773); expected 358.6 (0.02)
Passed bias filter:                      967  (0.053935); expected 358.6 (0.02)
Passed Vit filter:                       242  (0.0134977); expected 17.9 (0.001)
Passed Fwd filter:                       134  (0.00747392); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              95  [number of targets reported over threshold]
# CPU time: 1.20u 0.37s 00:00:01.56 Elapsed: 00:00:00.55
# Mc/sec: 678.14
//
Query:       CDO73256.1  [L=133]
Description: hypothetical protein BN946_scf185008.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-49  167.5   0.1    1.3e-49  167.3   0.1    1.0  1  SelR            SelR domain
  ------ inclusion threshold ------
      0.012   15.9   0.5        0.1   13.0   0.0    2.1  2  GFA             Glutathione-dependent formaldehyde-activating
      0.045   13.8   2.4       0.33   11.0   2.3    2.1  2  DZR             Double zinc ribbon
       0.05   13.5   0.0       0.62   10.0   0.0    2.1  2  ADD_ATRX        Cysteine Rich ADD domain
       0.15   12.3   0.8        1.8    8.8   0.8    2.1  1  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr
       0.18   12.0   1.3        1.2    9.4   0.1    2.5  3  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 
       0.29   11.3   6.5        0.3   11.2   0.2    3.2  4  zf-Mss51        Zinc-finger of mitochondrial splicing suppres
       0.47   10.7   3.5        2.2    8.5   0.5    2.3  2  Ribosomal_L37e  Ribosomal protein L37e
          2    8.0   5.3         16    5.1   0.4    3.1  3  TF_Zn_Ribbon    TFIIB zinc-binding
        3.7    7.1   7.2         12    5.5   0.1    3.2  4  zf-ribbon_3     zinc-ribbon domain


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.1   7.2e-53   1.3e-49       1     120 [.      11     126 ..      11     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 7.2e-53
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEEC CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFe 99 
                 e+++ L+peq+++lrekgte++ tg+y+k++e+Gvy+ca+cg+pL++s+tkf+sgcGwp+F++a+++     ++d+s+gm+r+e++ca c++hlGhvF+
  CDO73256.1  11 EWRAILSPEQFRILREKGTEPASTGKYDKFNEEGVYTCAGCGTPLYRSSTKFNSGCGWPAFFDAVER-----HEDRSFGMSRIEITCAACGGHLGHVFK 104
                 7*************************************************************87665.....9************************** PP

                 .TSSSSS.SEEEEE-CCCEEEE CS
        SelR 100 .dgpkpttgkrycinsvslkfk 120
                  +g++++t++r+c+ns+sl+f+
  CDO73256.1 105 gEGFPTPTDERHCVNSISLNFV 126
                 *********************7 PP

>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.6e-05       0.1      14      66 ..       8      62 ..       5      72 .. 0.77
   2 ?    1.0   0.1       0.3   5.4e+02      46      60 ..      84     100 ..      70     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-05
         GFA 14 saftanavvkaealelleg...elkeykktadsgnkvtrsfCpeCgsplyseesaa 66
                s   + a+++ e++++l++   e+++   + d+ n+   + C  Cg+ply ++++ 
  CDO73256.1  8 SESEWRAILSPEQFRILREkgtEPASTG-KYDKFNEEGVYTCAGCGTPLYRSSTKF 62
                67788999999****9988556444332.4678888888***********877765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.3
         GFA  46 kvtr..sfCpeCgsply 60 
                 +++r    C +Cg +l 
  CDO73256.1  84 GMSRieITCAACGGHLG 100
                 55554468****98875 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2     0.001       1.8      28      49 .]      45      67 ..      24      67 .. 0.69
   2 ?   11.0   2.3   0.00018      0.33       9      36 ..      42      97 ..      38     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
         DZR 28 edrCpsCgek.vdpearfCpeCG 49
                 ++C  Cg++   + ++f   CG
  CDO73256.1 45 VYTCAGCGTPlYRSSTKFNSGCG 67
                67888888887777777877776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00018
         DZR  9 ppdarfCseCgtklkavaa............................edrCpsCge 36
                +++  +C  Cgt+l + ++                            e++C +Cg 
  CDO73256.1 42 EEGVYTCAGCGTPLYRSSTkfnsgcgwpaffdaverhedrsfgmsriEITCAACGG 97
                566778999999998666689999999999999999999*******99******85 PP

>> ADD_ATRX  Cysteine Rich ADD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19   3.4e+02       9      21 ..      43      55 ..      36      62 .. 0.75
   2 ?   10.0   0.0   0.00035      0.62      11      26 ..      89     104 ..      80     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.19
    ADD_ATRX  9 eeivsCtaCgqqv 21
                e   +C+ Cg  +
  CDO73256.1 43 EGVYTCAGCGTPL 55
                55679****9765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00035
    ADD_ATRX  11 ivsCtaCgqqvnhfqk 26 
                  ++C+aCg ++ h+ k
  CDO73256.1  89 EITCAACGGHLGHVFK 104
                 49*********99876 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.8     0.001       1.8      51      70 ..      85     104 ..      44     126 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
                   EEEEEEEETTT--EEEEEEE CS
  Yippee-Mis18  51 ctystlsCkgCnsvlGwkYk 70 
                    +  +++C+ C+ +lG ++k
    CDO73256.1  85 MSRIEITCAACGGHLGHVFK 104
                   556789**********9987 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00065       1.2      17      29 ..      47      59 ..      46      71 .. 0.85
   2 ?    0.7   0.0      0.33     6e+02      34      40 .]      90      96 ..      82      98 .. 0.77
   3 ?   -3.4   0.0       6.3   1.1e+04      33      37 ..     114     118 ..     109     119 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00065
  Auto_anti-p27 17 tCpvCgvPLmrdr 29
                   tC  Cg+PL r+ 
     CDO73256.1 47 TCAGCGTPLYRSS 59
                   8**********75 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.33
  Auto_anti-p27 34 vyCvaCd 40
                   + C+aC+
     CDO73256.1 90 ITCAACG 96
                   5677774 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.3
  Auto_anti-p27  33 kvyCv 37 
                    +  Cv
     CDO73256.1 114 ERHCV 118
                    44788 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       7.7   1.4e+04      27      34 ..       6      13 ..       4      14 .. 0.72
   2 ?   11.2   0.2   0.00017       0.3      16      34 ..      45      63 ..      32      66 .. 0.86
   3 ?    0.6   0.0      0.34   6.1e+02      21      36 ..      65      80 ..      64      83 .. 0.73
   4 ?    1.1   0.2      0.24   4.2e+02      13      23 ..      86      96 ..      76      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.7
    zf-Mss51 27 ycseehwe 34
                  se +w+
  CDO73256.1  6 SKSESEWR 13
                67899997 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00017
    zf-Mss51 16 dfeCpdCGiptycseehwe 34
                 ++C  CG p y s  +++
  CDO73256.1 45 VYTCAGCGTPLYRSSTKFN 63
                59************98875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.34
    zf-Mss51 21 dCGiptycseehwedD 36
                 CG+p + +  + ++D
  CDO73256.1 65 GCGWPAFFDAVERHED 80
                5****98877665555 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.24
    zf-Mss51 13 khvdfeCpdCG 23
                ++++++C  CG
  CDO73256.1 86 SRIEITCAACG 96
                67899*****9 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5    0.0012       2.2       6      41 ..      33      70 ..      26      71 .. 0.74
   2 ?    2.9   0.1     0.071   1.3e+02      16      23 ..      89      96 ..      76     106 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
  Ribosomal_L37e  6 sfGkrqk..kktHilCrrCgkrsyhvqkktCascGyps 41
                    s Gk +k  ++   +C  Cg   y   +k  + cG+p+
      CDO73256.1 33 STGKYDKfnEEGVYTCAGCGTPLYRSSTKFNSGCGWPA 70
                    667665411334568*********************96 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.071
  Ribosomal_L37e 16 HilCrrCg 23
                     i+C  Cg
      CDO73256.1 89 EITCAACG 96
                    45555555 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.58     1e+03      35      42 ..       7      14 ..       1      14 [. 0.78
   2 ?    5.1   0.4    0.0092        16      15      27 ..      41      53 ..      34      55 .. 0.81
   3 ?    3.6   0.1     0.026        46      18      26 ..      88      96 ..      85      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.58
                  CCCCHHHH CS
  TF_Zn_Ribbon 35 degpewre 42
                  ++++ewr+
    CDO73256.1  7 KSESEWRA 14
                  7899**97 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0092
                  TSTTCEEESSSSB CS
  TF_Zn_Ribbon 15 pergelvCtdCGl 27
                  +e+g ++C  CG+
    CDO73256.1 41 NEEGVYTCAGCGT 53
                  46799******96 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.026
                  TCEEESSSS CS
  TF_Zn_Ribbon 18 gelvCtdCG 26
                   e++C +CG
    CDO73256.1 88 IEITCAACG 96
                  589*****7 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0066        12      13      26 .]      42      55 ..      38      55 .. 0.82
   2 ?   -1.3   0.0      0.92   1.6e+03       8      11 ..      66      69 ..      64      74 .. 0.80
   3 ?    4.6   0.2     0.012        22      17      24 ..      90      97 ..      88      99 .. 0.80
   4 ?   -2.6   0.0       2.3   4.1e+03       3       5 ..     115     117 ..     110     119 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0066
  zf-ribbon_3 13 ssddnvCpyCGtkl 26
                 ++++ +C+ CGt+l
   CDO73256.1 42 EEGVYTCAGCGTPL 55
                 677779******97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.92
  zf-ribbon_3  8 CGap 11
                 CG+p
   CDO73256.1 66 CGWP 69
                 9998 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.012
  zf-ribbon_3 17 nvCpyCGt 24
                 ++C+ CG+
   CDO73256.1 90 ITCAACGG 97
                 68999997 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.3
  zf-ribbon_3   3 vrC 5  
                  ++C
   CDO73256.1 115 RHC 117
                  455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 899.93
//
Query:       CDO73257.1  [L=395]
Description: hypothetical protein BN946_scf185008.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-76  254.6   0.0    1.1e-75  254.4   0.0    1.0  1  Pkinase        Protein kinase domain
    2.7e-32  112.1   0.0    9.6e-32  110.3   0.0    1.7  2  Pkinase_Tyr    Protein tyrosine kinase
     0.0094   15.3   0.2       0.22   10.8   0.0    2.1  2  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.021   14.7   0.0    1.5  1  APH            Phosphotransferase enzyme family
      0.026   13.5   0.0       0.28   10.1   0.0    2.0  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.4   0.0   3.2e-79   1.1e-75       2     264 .]      44     323 ..      43     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: 254.4 bits;  conditional E-value: 3.2e-79
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.rkgslseee 99 
                  k++k+GeG++++Vyk++e +tg++vA+Kkik+ + k+  + +++rE+k+l++lkh+n+++l++vf++k++l lvle+++++ l+ +++ r+ ++ +++
  CDO73257.1  44 AKDQKIGEGTYAVVYKGREISTGRKVAIKKIKVGQFKDGLDMSAIREVKFLRELKHQNVIELLDVFSSKKNLNLVLEFLDTD-LELVIKdRSLVFLPAD 141
                 5789****************************************************************************77.99999966667***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkpp 196
                 +k++++ +++gle++H++ i+HrDlKp+N+Li  +g+lKi+DFGla+ +      +t +v+t++Y++PE+l + + ys++vD+Ws+G+i++el+ ++p 
  CDO73257.1 142 IKSWMAMTFRGLEFCHRNFILHRDLKPNNLLIAADGQLKIADFGLARDFADPGYkMTCQVITRWYRPPELLfGCRYYSTAVDIWSVGCIFAELMLRTPY 240
                 ***********************************************98776544999*************888999********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilg.etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++   g++    ++dql++i++ lg +t+e++p ++++                     s+++++ll+k+l +dp++R++a+++l+hpy+
  CDO73257.1 241 LP---GES----DMDQLKTIFRALGtPTEEDWPGHTKLpdyvpvgqfpktalrdlftaaSSDCLNLLSKCLIYDPRRRISAKDALNHPYF 323
                 **...444....88999999999999999************************************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   2.7e-35   9.6e-32       4     206 ..      46     240 ..      44     268 .. 0.89
   2 ?   -1.0   0.0      0.24   8.7e+02     230     254 ..     292     316 ..     287     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 2.7e-35
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  ++k+GeG+++ V++g+      ++  kVa+K++k ++ ++    + ++e+k++++lkh+n+++ll v +++++l +v+e+++  dL+  ++++ +  +
   CDO73257.1  46 DQKIGEGTYAVVYKGREI----STGRKVAIKKIKVGQFKDGlDMSAIREVKFLRELKHQNVIELLDVFSSKKNLNLVLEFLDT-DLELVIKDR-SLVF 137
                  689*************99....8999*******98777666478899*********************************986.9*******9.9999 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslkekk.ftsksDvWsfGvllw 196
                     d+ s+++   +G+e+ +++ ++Hrdl   N L++ + + ki+DfGLard   d  y  k ++++  +W+ +pE l+ ++ ++++ D+Ws G +  
   CDO73257.1 138 LPADIKSWMAMTFRGLEFCHRNFILHRDLKPNNLLIAADGQLKIADFGLARDF-ADPGY--KMTCQVITRWYrPPELLFGCRyYSTAVDIWSVGCIFA 232
                  999999***********************************************.55555..46678888888799****99978999*********** PP

                  HHHTTSSGTT CS
  Pkinase_Tyr 197 Eiftlgespy 206
                  E++   ++py
   CDO73257.1 233 ELML--RTPY 240
                  **98..5565 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.24
                  SBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 230 cpeelyelmkkcweedpeeRptfse 254
                  ++++  +l++kc+ +dp++R + ++
   CDO73257.1 292 ASSDCLNLLSKCLIYDPRRRISAKD 316
                  56778899************98776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.024        84       4      66 ..      33      95 ..      31     107 .. 0.84
   2 !   10.8   0.0   6.2e-05      0.22     164     239 ..     160     230 ..     153     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.024
  Kinase-like  4 eselgerertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelai 66
                 e    er+r   + + +++g   vv++ ++  tg ++a+k   + +     d+  ++e +++ 
   CDO73257.1 33 EKANAERQRRWAKDQKIGEGTYAVVYKGREISTGRKVAIKKIKVGQFKDGLDMSAIREVKFLR 95
                 55567899999*****************************99999988888888888888764 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.2e-05
  Kinase-like 164 glvhgkftvdnllldekgglmlggftaLvra...gtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                   ++h +++++nll   +g+l++ +f+  +     g k+    + + + PpEll             ++ ++d W +G  
   CDO73257.1 160 FILHRDLKPNNLLIAADGQLKIADFGLARDFadpGYKMTCQVITRWYRPPELLFGC--------RYYSTAVDIWSVGCI 230
                  589**********************8443332226666666677*******98762........246778999999964 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.9e-06     0.021     163     197 ..     156     188 ..      84     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.9e-06
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                   +  +lH+Dl+p+Nll+  +dg++  + Df++a+
  CDO73257.1 156 CHRNFILHRDLKPNNLLIA-ADGQL-KIADFGLAR 188
                 556779*************.66776.699999885 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.8e-05      0.28     109     255 ..      50     188 ..      17     201 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.8e-05
  Haspin_kinase 109 seklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev.k 201
                    +e+ +  vy+ +e  + ++v++K+i ++  +d     ++ + e k l+ +k +  +++ ll  +  k+        +l   l+l++  tdLe v k
     CDO73257.1  50 GEGTYAVVYKGREisTGRKVAIKKIKVGQFKDGL--DMSAIREVKFLRELKHQ--NVIELLDVFSSKK--------NLN--LVLEFLDTDLELViK 131
                    7777777777777667777777777777666633..34566677777666665..3333332222222........333..344444466666543 PP

  Haspin_kinase 202 lksw....kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                     +s     ++++s +  +   L     +f + HRdL+ +n L+ + ++  + d+ l+R
     CDO73257.1 132 DRSLvflpADIKSWMAMTFRGLEFCHRNFIL-HRDLKPNNLLIAADGQLKIADFGLAR 188
                    2322111234444444455556666666654.999999******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2769.06
//
Query:       CDO73258.1  [L=818]
Description: hypothetical protein BN946_scf185008.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-12   44.5  11.4    3.1e-06   26.4   2.4    2.4  2  zf-RanBP        Zn-finger in Ran binding protein and others
    2.3e-05   23.7   1.6       0.22   10.9   0.0    2.8  2  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger
  ------ inclusion threshold ------
      0.041   14.0   0.5         11    6.1   0.1    2.9  2  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
       0.34   11.3   1.9         19    5.7   0.1    2.5  2  C1_2            C1 domain
       0.55    9.9   4.5       0.96    9.1   4.5    1.3  1  ERK-JNK_inhib   ERK and JNK pathways, inhibitor


Domain annotation for each model (and alignments):
>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   2.4   8.7e-10   3.1e-06       3      30 .]     739     767 ..     737     767 .. 0.92
   2 !   23.1   1.8   8.9e-09   3.2e-05       3      28 ..     792     818 .]     790     818 .] 0.92

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.7e-10
                 S.SEE-SSS--EEESSSSB-TTT--BTSC CS
    zf-RanBP   3 g.dWdCskClvqNfawstkCvaCqapkpd 30 
                 g  W Cs+C ++N+ ++ kC  C+ap++d
  CDO73258.1 739 GdTWSCSVCMLSNPGSADKCTVCEAPRED 767
                 558************************86 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 8.9e-09
                 S.SEE-SSS--EEESSSSB-TTT--BT CS
    zf-RanBP   3 g.dWdCskClvqNfawstkCvaCqapk 28 
                 g  W+Cs+C ++N+  ++kC  C++p+
  CDO73258.1 792 GdTWTCSVCMLSNPGGAVKCTVCDSPR 818
                 558**********************98 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.4   6.7e-05      0.24       6      23 ..     738     755 ..     733     772 .. 0.78
   2 !   10.9   0.0   6.1e-05      0.22       6      20 ..     791     805 ..     787     810 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.7e-05
  Vps36-NZF-N   6 vtatWvCpICsfsNevps 23 
                  +  tW C +C+ sN+ + 
   CDO73258.1 738 SGDTWSCSVCMLSNPGSA 755
                  5679**********9665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.1e-05
  Vps36-NZF-N   6 vtatWvCpICsfsNe 20 
                  +  tW+C +C+ sN+
   CDO73258.1 791 SGDTWTCSVCMLSNP 805
                  5679**********7 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0087        31      20      34 ..     738     752 ..     736     754 .. 0.87
   2 ?    6.1   0.1    0.0031        11      20      34 ..     791     805 ..     789     806 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0087
  zf-Sec23_Sec24  20 ggkrwiCnfCnhkne 34 
                     +g +w C  C  +n+
      CDO73258.1 738 SGDTWSCSVCMLSNP 752
                     5789*******9996 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0031
  zf-Sec23_Sec24  20 ggkrwiCnfCnhkne 34 
                     +g +w+C  C  +n+
      CDO73258.1 791 SGDTWTCSVCMLSNP 805
                     5789******99996 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.013        48      13      39 ..     736     762 ..     730     765 .. 0.80
   2 ?    5.7   0.1    0.0052        19      13      39 ..     789     815 ..     783     816 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
        C1_2  13 edssesfnCsaCgrkidgffYsCseCd 39 
                 ++s ++++Cs+C  +  g+  +C+ C+
  CDO73258.1 736 KPSGDTWSCSVCMLSNPGSADKCTVCE 762
                 6778899*****999666667888785 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0052
        C1_2  13 edssesfnCsaCgrkidgffYsCseCd 39 
                 ++s ++++Cs+C  +  g   +C+ Cd
  CDO73258.1 789 KPSGDTWTCSVCMLSNPGGAVKCTVCD 815
                 678889*******99666669999997 PP

>> ERK-JNK_inhib  ERK and JNK pathways, inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.5   0.00027      0.96     152     196 .]     386     445 ..     379     445 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
  ERK-JNK_inhib 152 v.ereeeyvNpyre..............eaeqkekeeeekkekkkkkkkkkkkkKgPrls 196
                    + ++++++ Npy+               ++ ++  +++ +k k++ k++ k+k+K P+l+
     CDO73258.1 386 TpPKKPDFANPYEAvsplprpaqkkqpvRKTRSAARANAEKVKEQAKEQAKEKEKEPELT 445
                    4489********88**********998877777778888888888888889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1497  (0.083496); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 5166.37
//
Query:       CDO73259.1  [L=169]
Description: hypothetical protein BN946_scf185008.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-32  112.2   0.0    1.9e-32  111.8   0.0    1.2  1  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21
    1.4e-12   47.4   0.0      2e-12   46.9   0.0    1.2  1  NADH_u_ox_C      C-terminal of NADH-ubiquinone oxidoreductase


Domain annotation for each model (and alignments):
>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   2.1e-36   1.9e-32       2      82 .]       8      90 ..       7      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 2.1e-36
  NADH-u_ox-rdase  2 paYpvIdsdPsfsrvlrnfrpsDYvkaaaitaafplallaleklsPsvagka..mtlagligflggfllayqnssqRLkGfrE 82
                     +++p+Id+dP+ srv+r++rpsDY+++a++taa+p al++++k++Ps+ + +  ++l gl+gf+ggfllayq+ss+R++G++E
       CDO73259.1  8 TPFPLIDADPHASRVIRYMRPSDYAVWAGATAAAPTALYLWDKWDPSKLKIRsqLRLGGLLGFIGGFLLAYQRSSFRFWGWTE 90
                     89**********************************************877689***************************98 PP

>> NADH_u_ox_C  C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.3e-16     2e-12       3      63 ..     101     159 ..      99     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.3e-16
  NADH_u_ox_C   3 eikkllsqgklpYkenesvLddrlkdvanRnsqysalllailPWFnlayhpyhgvdlkkYY 63 
                  e+ ++  +g ++Y  +es   + +++va Rns +s+l ++++P Fnl++hpyhg d +kY 
   CDO73259.1 101 ELSERARRGLPLY--GESDQPEWIQGVAYRNSAFSQLKFHVFPMFNLVNHPYHGTDPEKYK 159
                  6777788888999..99999***************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1223.69
//
Query:       CDO73260.1  [L=249]
Description: hypothetical protein BN946_scf185008.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0022   18.3   0.1     0.0048   17.2   0.0    1.6  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.038   13.4   0.1      0.073   12.5   0.1    1.4  1  DUF4349      Domain of unknown function (DUF4349)
      0.051   13.6   0.1       0.12   12.4   0.1    1.6  1  DUF1192      Protein of unknown function (DUF1192)
      0.086   12.7   0.1       0.23   11.3   0.1    1.7  1  PKcGMP_CC    Coiled-coil N-terminus of cGMP-dependent protein
       0.54   10.4   0.2       0.54   10.4   0.2    2.4  2  bZIP_2       Basic region leucine zipper


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.3e-06    0.0048      37      87 ..      30      80 ..      11      83 .. 0.89
   2 ?   -3.3   0.0       3.3   1.2e+04      36      89 ..     194     204 ..     177     207 .. 0.46

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.3e-06
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87
                  +++v+ +a +  g++L  +++ g ++++d+ s +++++ls ++   +t +
   CDO73260.1 30 VGESVTTVAISLTGSMLLAGTASGLIHIYDVASHQLLRTLSSHKGMMITHI 80
                 5789***************************************99877765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.3
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++ ++                                           ++ + W
   CDO73260.1 194 DKAKS-------------------------------------------INDVMW 204
                  23333...........................................444444 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     2e-05     0.073      90     119 ..     174     203 ..     172     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
     DUF4349  90 DleaRlkaleasedrllallekaksvedll 119
                  +++R+  le +++rl++ l+kaks++d++
  CDO73260.1 174 SIQSRVNDLESEVTRLREQLDKAKSINDVM 203
                 579*************************96 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.4e-05      0.12      25      48 ..     175     198 ..     174     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
     DUF1192  25 LeerIalLeaEIaRleaaiakkka 48 
                 ++ r+ +Le+E+ Rl+++++k+k+
  CDO73260.1 175 IQSRVNDLESEVTRLREQLDKAKS 198
                 688*****************9987 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.4e-05      0.23      14      33 ..     176     195 ..     174     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.4e-05
   PKcGMP_CC  14 EkrlaekdeEIqELrskLDK 33 
                 + r+++ + E++ Lr +LDK
  CDO73260.1 176 QSRVNDLESEVTRLREQLDK 195
                 8899***************9 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00015      0.54      30      51 ..     175     196 ..     173     198 .. 0.89
   2 ?    0.4   1.1      0.19   6.8e+02       7      13 ..     242     248 ..     235     249 .] 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  30 leervkeLeeeNaqLrqkveqL 51 
                 +++rv++Le+e  +Lr+++++ 
  CDO73260.1 175 IQSRVNDLESEVTRLREQLDKA 196
                 799***************9875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
                 XXXXXXX CS
      bZIP_2   7 erRrkNr 13 
                 +rR++Nr
  CDO73260.1 242 RRRKRNR 248
                 5666*99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1801.01
//
Query:       CDO73261.1  [L=1351]
Description: hypothetical protein BN946_scf185008.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-14   52.3   1.2    1.1e-13   51.0   1.2    1.6  1  DnaJ      DnaJ domain
    9.2e-08   32.0   0.2    0.00069   19.4   0.1    2.8  2  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   1.2   1.3e-17   1.1e-13      14      63 .]     872     927 ..     867     927 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.3e-17
                 HHHHHHHHHHHHHHHSTT...TS...CCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  14 edeIkkaYrklalkyHPD...kn...pkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 e++++kaYrk al+ HPD   +n   +++++aee+F+ +n+AyevL+++++Rk YD
  CDO73261.1 872 EQTVRKAYRKRALQTHPDrlpQNvsqADKKKAEEQFRLVNNAYEVLNNEDSRKLYD 927
                 6789**************666336545666*************************9 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   8.3e-05      0.75       3      35 ..     576     609 ..     575     626 .. 0.81
   2 !   19.4   0.1   7.7e-08   0.00069      99     144 ..     792     837 ..     775     839 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8.3e-05
       DDE_3   3 vfiDEsgfqlgtvrrrawakkGkrer.leeygrr 35 
                 +f+DE+ f++++ +++aw ++G++ r  +++gr 
  CDO73261.1 576 IFHDECCFHANDFKKTAWLREGETVRqSKSRGRL 609
                 79**********************9766666654 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 7.7e-08
       DDE_3  99 lveeeadrlellylPpySPelNpiEivwsklkrellk..rrsfkslde 144
                 ++ee  +++  ++lP+   elNpiE+ w+++k++ ++  +++f++ ++
  CDO73261.1 792 VIEE--AGHACIFLPKFHCELNPIEMYWGWCKYRYREviKKNFEEAKQ 837
                 4455..89999**********************999855566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.32s 00:00:01.27 Elapsed: 00:00:00.48
# Mc/sec: 8401.48
//
Query:       CDO73262.1  [L=683]
Description: hypothetical protein BN946_scf185008.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-17   63.3   2.5    2.7e-08   33.3   0.1    3.2  2  SH3_1     SH3 domain
    7.4e-14   51.6   0.0    1.4e-13   50.7   0.0    1.4  1  SAM_2     SAM domain (Sterile alpha motif)
    6.7e-13   48.3   1.3    3.8e-06   26.6   0.1    2.7  2  SH3_9     Variant SH3 domain
    7.8e-12   45.5   0.0    1.6e-11   44.5   0.0    1.6  1  SAM_1     SAM domain (Sterile alpha motif)
    7.1e-08   32.0   0.2    2.6e-05   23.8   0.0    2.6  2  SH3_2     Variant SH3 domain
    2.6e-07   31.2   0.0    5.4e-07   30.2   0.0    1.5  1  RA        Ras association (RalGDS/AF-6) domain
     0.0096   16.2   3.0       0.88    9.9   0.3    2.8  2  SH3_3     Bacterial SH3 domain
  ------ inclusion threshold ------
      0.073   12.9   0.1       0.22   11.4   0.0    1.7  2  SAM_3     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   3.5e-10   7.8e-07       1      47 [.     471     525 ..     471     526 .. 0.81
   2 !   33.3   0.1   1.2e-11   2.7e-08       1      48 []     576     622 ..     576     622 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.5e-10
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.........TEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.........gkeGliP 47 
                 +A+Y+Y+ae++dE +   GD++i+++    gWw ++++            k+G++P
  CDO73262.1 471 VAIYPYMAEQEDEFDVVVGDTFIIVS-RARGWWVVQRDPAgtgqveqdpSKQGWVP 525
                 7*************************.5667****998654455666666677776 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 1.2e-11
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 iAl DY+++ ++EL+++k+D + v ++ ++ W  +    tg +G++Ps
  CDO73262.1 576 IALMDYKKKGEEELDLQKDDLLRVFKRYNH-WSYAVKEETGDRGWVPS 622
                 7*************************6666.****************8 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   6.2e-17   1.4e-13       4      66 .]      15      76 ..      14      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 6.2e-17
                HHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHHH CS
       SAM_2  4 wsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqelk 66
                w+ +dv++WL ++g++qy++  ++++i+g ++l  l+ e Lk++Gi   g+r+ ilk++ +lk
  CDO73262.1 15 WDENDVHNWLTKLGFPQYEQQVKEHNISG-DVLCVLDPESLKEIGIATIGQRLAILKAVYNLK 76
                9999*************************.****************************98886 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   2.2e-07   0.00049       1      44 [.     472     525 ..     472     529 .. 0.77
   2 !   26.6   0.1   1.7e-09   3.8e-06       1      47 [.     577     624 ..     577     625 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.2e-07
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl....tG.......rtGlvP 44 
                 A+ypy + ++de+ + +GD++++ ++   gW+ +++    tG       + G+vP
  CDO73262.1 472 AIYPYMAEQEDEFDVVVGDTFIIVSR-ARGWWVVQRdpagTGqveqdpsKQGWVP 525
                 89**********************99.89*****964544443444444555555 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.7e-09
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPany 47 
                 Al +y+ + ++eL Lq++D ++v ++  ++W ++ +  tG +G+vP+ +
  CDO73262.1 577 ALMDYKKKGEEELDLQKDDLLRVFKR-YNHWSYAVKeeTGDRGWVPSWF 624
                 899*********************99.89**9997557********976 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   7.1e-15   1.6e-11       3      64 .]      15      76 ..      13      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 7.1e-15
                TTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHHHHH CS
       SAM_1  3 wsvedVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIqrLk 64
                w+ +dV +WL ++g++qY+ + +++ i+gd L  l+ + L+++g+  +G r+ Il+a+  Lk
  CDO73262.1 15 WDENDVHNWLTKLGFPQYEQQVKEHNISGDVLCVLDPESLKEIGIATIGQRLAILKAVYNLK 76
                99*******************************************************98876 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0053        12       3      56 ..     471     531 ..     469     532 .. 0.75
   2 !   23.8   0.0   1.2e-08   2.6e-05       3      51 ..     576     622 ..     574     625 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0053
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEEC....CCE.......EEEEGCGEEE CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevg....Grv.......GlfPsslvee 56 
                 +ai  y +e ++e    +Gd++ ++    ++ +gww ++++    G+v       G++P  ++ e
  CDO73262.1 471 VAIYPYMAEQEDEFDVVVGDTFIIV----SRARGWWVVQRDpagtGQVeqdpskqGWVPAGCLLE 531
                 5566666666677777789999999....7889*****99445567778888888****999865 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.2e-08
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTE.EEEEE.CCCEEEEEG CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgw.wegev.gGrvGlfPs 51 
                 +a+ dy+   ++eL ++k+d+++v+    k+ + w +++    G +G++Ps
  CDO73262.1 576 IALMDYKKKGEEELDLQKDDLLRVF----KRYNHWsYAVKEeTGDRGWVPS 622
                 68889********************....9999998999777********8 PP

>> RA  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.4e-10   5.4e-07      15      92 ..     255     334 ..     244     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.4e-10
                 T..EEEEEEETTSBHHHHHHHHHHHCT-.GGGGCCEEEE..CCCTTTTEEEEE-TTSBCHHHHCCC-TTTSTCEEEEEECT CS
          RA  15 gttyksikvsststaqeViealLekfgl.edspedyvLv..eskerggeerkLdddecplqiqlqwkkreeslrFvLreke 92 
                 + + ks kvs ++ a +V+ a+L+k+++ +d++++y+ +        + er L+ de+pl ++ ++k  +++  F+L++ +
  CDO73262.1 255 D-NLKSFKVSLDDPAWKVLPAALKKYKInNDDWQNYAMFicYGAPGSRIERCLSYDEKPLLLFQKLKDAKKNPVFMLKHIK 334
                 2.489*********************************8766666677899****************999*******9865 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.2    0.0083        19      20      54 ..     487     529 ..     485     529 .. 0.79
   2 !    9.9   0.3   0.00039      0.88      20      54 ..     592     625 ..     590     626 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0083
       SH3_3  20 pyGekVevleetgggeWykv.........rtddgte.Gwvssgyl 54 
                   G++++++++ +g  W+ v          + d ++ Gwv +g+l
  CDO73262.1 487 VVGDTFIIVSRARG--WWVVqrdpagtgqVEQDPSKqGWVPAGCL 529
                 679***********..****98888888744444424***99986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00039
       SH3_3  20 pyGekVevleetgggeW.ykvrtddgteGwvssgyl 54 
                 ++ + + v+++ +   W y v++ +g +Gwv s+++
  CDO73262.1 592 QKDDLLRVFKRYNH--WsYAVKEETGDRGWVPSWFI 625
                 67788899999999..***************99986 PP

>> SAM_3  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.7e-05      0.22      12      59 ..      17      65 ..      16      68 .. 0.78
   2 ?   -3.6   0.1       4.5     1e+04      37      51 ..     585     599 ..     583     601 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.7e-05
       SAM_3 12 peeVkaWLtakgFskktve.sLgklsGaqLfsLskeeLeqicgaaeGsR 59
                +++V++WLt+ gF ++ ++ + +++sG  L  L++e L++i  a  G+R
  CDO73262.1 17 ENDVHNWLTKLGFPQYEQQvKEHNISGDVLCVLDPESLKEIGIATIGQR 65
                58***********9974331346799************99866555655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.5
       SAM_3  37 GaqLfsLskeeLeqi 51 
                 G++ + L+k++L ++
  CDO73262.1 585 GEEELDLQKDDLLRV 599
                 778899****99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4783.42
//
Query:       CDO73263.1  [L=1160]
Description: hypothetical protein BN946_scf185008.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.35s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 7135.47
//
Query:       CDO73264.1  [L=543]
Description: hypothetical protein BN946_scf185008.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-102  343.3   0.0   1.4e-102  343.0   0.0    1.1  1  aGPT-Pplase1  alpha-glutamyl/putrescinyl thymine pyrophosphor
    2.7e-12   46.4   0.2    6.3e-12   45.2   0.2    1.7  1  Chromo        Chromo (CHRromatin Organisation MOdifier) domai


Domain annotation for each model (and alignments):
>> aGPT-Pplase1  alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.0   0.0  1.5e-106  1.4e-102       2     279 ..     128     407 ..     127     408 .. 0.98

  Alignments for each domain:
  == domain 1  score: 343.0 bits;  conditional E-value: 1.5e-106
  aGPT-Pplase1   2 evldtffefaaeRqkiflrrlagepaPWtdDpiLqkykfcNvyRelDrvsqyliknviekgsqsleellFrvllfrlfnkietwelLeeelgelttw 98 
                    ++dtff+f++eR+  ++ rlag+p+PWt+D+i+++y f+Nv+R++Drvsqy+++nvi++g+q+l+e +Frv++fr fnkietwelL+ ++g + tw
    CDO73264.1 128 VIFDTFFKFVSERHLTQQLRLAGKPPPWTSDSIIATYPFTNVFRVYDRVSQYVLRNVIQQGDQNLHEQCFRVMVFRSFNKIETWELLTAHFGAI-TW 223
                   589*****************************************************************************************99.5* PP

  aGPT-Pplase1  99 kefdleayekvLeeakakgkkiYtnAYiipapkegakekhenhlrlleklmeeklpekllkakslkevyellrkipglGpFlayqllldlnyselln 195
                   ++fd++ ye+vL e++++ +++Y++AYiip+pk g + + +nhlrl++ +mee+lp++l+k+++lk+++  +  +pg+G+F+a+qllldln+++++n
    CDO73264.1 224 RDFDVNMYEDVLVEQQQN-HALYGHAYIIPSPKLGGRANASNHLRLVQLMMEEDLPGQLRKLHHLKDAHGRISLFPGMGDFMALQLLLDLNMTPHFN 319
                   **************9887.9***************9************************************************************* PP

  aGPT-Pplase1 196 fsendfvvaGpGarsglkklfgdkdgkteeeeiirwladnqdeeferlglkfeel.....egrplslidienllCEvdKYsRvahpeik 279
                   +se+++v++GpG+ ++l+k+fg+ + +++e +++r+l+++q+++f+rl+++++++     + ++ls++d+e++lCE++KYsR++hp+ik
    CDO73264.1 320 YSEDEWVALGPGSLECLRKMFGP-SIRGFEFDALRYLHQSQHTHFARLHIRPRDIprvpgHTPGLSMVDLEHALCECEKYSRACHPSIK 407
                   **********************9.99*****************************999999*************************998 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.2     7e-16   6.3e-12       1      53 [.     460     513 ..     460     514 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 7e-16
                 EEEEEEEEEEEETTEEC.EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgle.leYlVKWkglpysentWEpeenlekcfqelideFkk 53 
                 yeV  I++++ + ++++ ++Yl++W+g+ ++++tWE e+ l + ++++++e+k+
  CDO73264.1 460 YEVSHIVAEKRSGSERGdPQYLIRWRGWGPEDDTWEHESRLVDGAPDVLEEWKS 513
                 89********99999999**********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3751.97
//
Query:       CDO73265.1  [L=213]
Description: hypothetical protein BN946_scf185008.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-20   72.8   0.5    3.8e-20   71.8   0.5    1.6  1  DnaJ            DnaJ domain
  ------ inclusion threshold ------
      0.076   13.7   2.0        1.8    9.3   0.0    3.2  3  ThiS            ThiS family
       0.49   10.6   6.0        1.5    9.0   0.9    2.6  2  Bac_small_YrzI  Probable sporulation protein (Bac_small_yrzI)
        6.2    6.1  15.7        1.3    8.3  12.4    1.5  2  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.5   8.5e-24   3.8e-20       1      63 []       6      74 ..       6      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 8.5e-24
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH......HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp......eaeekFkeineAyevLsdpekRkqYD 63
                ++Y+iLgv+++a++d+++kaY+  al+ HPDk p d        ae +F+ + +A+e+Lsdp kRk+YD
  CDO73265.1  6 NLYDILGVPQNATADDVRKAYKARALETHPDKLPPDAdeaeveAAEAQFRDVRTAFEILSDPAKRKAYD 74
                69*****************************9844433223446667*********************9 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.19   8.7e+02      10      35 ..      10      30 ..       2      78 .. 0.77
   2 ?    1.4   0.3      0.12   5.2e+02      14      36 ..     117     139 ..      95     156 .. 0.71
   3 ?    9.3   0.0    0.0004       1.8      14      51 ..     159     198 ..     149     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.19
                HHTCEEEEESSTSBHHHHHHHHHHHT CS
        ThiS 10 lageeelelaegstvaelleaLgery 35
                + g     +++++t +++++a ++r 
  CDO73265.1 10 ILG-----VPQNATADDVRKAYKARA 30
                445.....788888888888887765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
                 EEEEESSTSBHHHHHHHHHHHTC CS
        ThiS  14 eelelaegstvaelleaLgeryp 36 
                 +e+ la+++  ++ l++ + ry+
  CDO73265.1 117 REEMLASQKRYQDTLAQAELRYQ 139
                 56777888888888888888884 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0004
                 EEEEESSTSBHH.HHHHHHHHHTCHHG.TTTTEEEEETTE CS
        ThiS  14 eelelaegstva.elleaLgerypela.lerrvavavNge 51 
                 + + ++e+ t+a ell +L  r pe++  +++v ++ Ng+
  CDO73265.1 159 TDVKPGEAYTLAdELLSELRRRCPEWEvRRQKVLMEANGR 198
                 34778888888636**************99********97 PP

>> Bac_small_YrzI  Probable sporulation protein (Bac_small_yrzI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9   0.00034       1.5      19      42 ..     104     127 ..     102     130 .. 0.94
   2 ?    4.5   2.0    0.0088        40      13      36 ..     124     150 ..     124     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00034
  Bac_small_YrzI  19 eeEiereqqiekieeemkdrqlkY 42 
                     ++E++++++ + + eem+++q +Y
      CDO73265.1 104 QAELRHQERMRVLREEMLASQKRY 127
                     79*******************999 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0088
  Bac_small_YrzI  13 qKRk...yseeEiereqqiekieeemk 36 
                     qKR+   + ++E++++++ + +ee+++
      CDO73265.1 124 QKRYqdtLAQAELRYQERMKALEEQLR 150
                     788888899***************986 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   4.4     0.012        55     144     222 ..      42     117 ..      14     129 .. 0.56
   2 ?    8.3  12.4    0.0003       1.3     106     229 ..      88     209 ..      83     213 .] 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.012
     DUF4407 144 alqaeidaaearldalraeaqkeldgtk....gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelael 222
                 a +ae++aaea++++ r++++   d++k     +g         + ++ +   d++qa+la  +a+++++a+l ++++ +   
  CDO73265.1  42 ADEAEVEAAEAQFRDVRTAFEILSDPAKrkayDNG-------LNYLRRHRFRTDEIQARLARERAEWQRQAELRHQERMRVLR 117
                 55566666666666666666655554442222233.......45556667777777777777777777777777666555432 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0003
     DUF4407 106 keIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelka 204
                 +eI+a+la+e++e +++++ + ++ ++   +e+ a +++ q ++++ae r+++ +++++++l  ++ ++   +   g+a++ +++ l +++++  e++ 
  CDO73265.1  88 DEIQARLARERAEWQRQAELRHQERMRVLREEMLASQKRYQDTLAQAELRYQERMKALEEQLRLNREAERATDVKPGEAYTLADELLSELRRRCPEWEV 186
                 79****************9999999999999999*****************************99988888899999********************** PP

     DUF4407 205 kldatarlaalraelaeleaerake 229
                 +  +++ l +++ + ++ +a++a++
  CDO73265.1 187 R--RQKVLMEANGREQKQAARLANA 209
                 *..6666666666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1457.14
//
Query:       CDO73266.1  [L=263]
Description: hypothetical protein BN946_scf185008.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-33  116.8   0.0    1.7e-33  116.3   0.0    1.1  1  OHCU_decarbox  OHCU decarboxylase


Domain annotation for each model (and alignments):
>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   9.3e-38   1.7e-33       8     155 .]      53     226 ..      48     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 9.3e-38
                    HHHHHCCCSTTHHHHHHHHH.......CGS-S...SHHHHHHHHHHHCCCS-HHHHHHHHCTS--TTSCCCHHTHCHHHHHHHCCCTTTTCHHHHH CS
  OHCU_decarbox   8 ltavldtlfepspwlaelal.......arpfs...syeaLiaavaealealseeelleilsaHPrLGekaakkkklsalsrkEqaglglaaseeel 93 
                    l+++l+ lfepsp l + ++       +  +s   sy+aLi+a   +++++ ++ + +++++HPr+Ge     k+ls+ls++Eqa+ +  + +e+l
     CDO73266.1  53 LARALALLFEPSPALYSTLVpaltthiR-DSSlilSYDALIDASLGVIASWADDLKAQFIAGHPRIGE----VKGLSQLSAQEQAAKA--TPPEVL 141
                    6789***************999886641.333566*********************************....679**********987..9***** PP

                    HHHHHHHHHHHHHH.SS-----GCC--HHHHHHHHHHHTTS......................-HHHHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  94 eeLaelnaeYeekF.GlrfvvfvngrsrkeIlaelerRlen......................dpekElrealqemckIardRlk 155
                    ++La+lna Ye+++ Gl++++fvngrsr+eI +e+e+ l                        ++++El++a+ ++ kIa+ Rlk
     CDO73266.1 142 ARLAHLNACYEHRYpGLVYITFVNGRSRAEIKDEMEEALGLdhsvspdeppvesvgqvdagsqEWKRELERAIGDVGKIAKSRLK 226
                    ***************************************9999****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1842.20
//
Query:       CDO73267.1  [L=320]
Description: hypothetical protein BN946_scf185008.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-09   38.6   0.0    1.8e-09   37.9   0.0    1.3  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0     1e-13   1.8e-09      16      96 ..     129     209 ..     127     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1e-13
                      HHHHHHHHSSES.EEEEEESSTHCSST-.SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHHHHHH CS
  CTP_transf_like  16 lleqakklleed.livgvpsdeppkkkk.kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigadvled 96 
                      +l+qak  +    l+vgv sde+ k  +  + ++ ++R+e ++++++vdev++ +pw+l  ++l+ ++++  y++i++ +  d
       CDO73267.1 129 QLRQAKLSFPSVhLLVGVFSDEVCKEHNaATDIPHADRCEVVRHCRWVDEVVPEAPWTLHERFLRTRHIE--YVAIDEGTSID 209
                      7899*******9*************9977*****************************************..***99877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 2054.20
//
Query:       CDO73268.1  [L=928]
Description: hypothetical protein BN946_scf185008.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-19   68.3  20.5    0.00038   20.8   0.7    7.2  6  zf-C2H2      Zinc finger, C2H2 type
    1.3e-17   63.3  24.0    8.9e-06   25.9   0.2    5.8  6  zf-H2C2_2    Zinc-finger double domain
    3.9e-11   42.8  35.7     0.0034   18.1   0.4    7.6  6  zf-C2H2_4    C2H2-type zinc finger
    1.4e-06   28.8  17.1       0.06   14.0   1.9    5.8  5  FOXP-CC      FOXP coiled-coil domain
     0.0005   20.1   0.7        3.6    7.8   0.0    4.9  4  zf_ZIC       Zic proteins zinc finger domain
     0.0006   20.0   2.5      0.043   14.1   0.2    3.2  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0043   17.0  16.2         11    6.1   0.7    5.8  5  zf-C2H2_6    C2H2-type zinc finger
  ------ inclusion threshold ------
      0.011   15.5  13.8        1.6    8.6   0.0    5.5  5  zf-C2H2_11   zinc-finger C2H2-type
      0.029   14.1  10.5       0.44   10.4   1.5    4.8  4  zf-H2C2_5    C2H2-type zinc-finger domain
       0.12   12.9   6.0        4.2    7.9   0.3    2.9  2  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger
       0.12   12.7  11.5       0.88    9.9   4.3    4.2  4  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
        8.2    6.4   8.8        6.6    6.7   0.1    3.8  4  zf-C2H2_9    C2H2 type zinc-finger (1 copy)


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.05        75       2      23 .]     620     644 ..     619     644 .. 0.93
   2 !   18.3   0.7   1.5e-06    0.0023       1      23 []     773     798 ..     773     798 .. 0.96
   3 ?    0.9   0.1      0.52   7.8e+02       9      23 .]     820     834 ..     806     834 .. 0.76
   4 !   18.4   0.3   1.4e-06    0.0021       1      23 []     840     862 ..     840     862 .. 0.99
   5 !   14.7   0.0   2.1e-05     0.032       1      23 []     868     892 ..     868     892 .. 0.98
   6 !   20.8   0.7   2.5e-07   0.00038       1      21 [.     898     918 ..     898     919 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.05
                 EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirt.H 23 
                 +C+  +C  +F++  +L+ H ++ H
  CDO73268.1 620 QCKwaGCLATFRSLPDLVGHVNVqH 644
                 79999***************99988 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.5e-06
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ++C+  dCg+sF++ + L+ Hi + H
  CDO73268.1 773 HVCKwaDCGQSFSSCDTLTEHIASvH 798
                 79********************9988 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.52
                 EESSHHHHHHHHHCC CS
     zf-C2H2   9 sFkrksnLkrHirtH 23 
                  F +k    rH+++H
  CDO73268.1 820 GFASKQKISRHMQSH 834
                 588888899****99 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 1.4e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C++C++ F+    L +H+r+H
  CDO73268.1 840 FQCDVCKQNFSEAATLAQHMRRH 862
                 89********************9 PP

  == domain 5  score: 14.7 bits;  conditional E-value: 2.1e-05
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y+C+  +Cgk F     L+ H rtH
  CDO73268.1 868 YVCDfpGCGKAFAIAGALTIHKRTH 892
                 89**********************9 PP

  == domain 6  score: 20.8 bits;  conditional E-value: 2.5e-07
                 EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                 +kC++C++ F+ +snL +H +
  CDO73268.1 898 FKCTYCDRAFSESSNLSKHVS 918
                 8******************87 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   3.4e+03       8      15 ..     730     737 ..     728     741 .. 0.85
   2 ?   -2.0   0.2         4     6e+03      14      25 ..     772     785 ..     760     786 .. 0.81
   3 ?   -1.9   0.1       3.7   5.6e+03       2      13 ..     790     802 ..     790     808 .. 0.68
   4 !   25.9   0.8   6.2e-09   9.3e-06       3      25 ..     828     850 ..     827     851 .. 0.94
   5 !   25.9   0.2     6e-09   8.9e-06       2      25 ..     855     880 ..     854     880 .. 0.90
   6 !   25.2   0.8   9.8e-09   1.5e-05       1      25 [.     884     908 ..     884     909 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
   zf-H2C2_2   8 kHtgekpy 15 
                 +H+g++p+
  CDO73268.1 730 FHHGPSPL 737
                 6****995 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4
   zf-H2C2_2  14 pyeCp..lCdkaFk 25 
                  + C+   C+ +F+
  CDO73268.1 772 AHVCKwaDCGQSFS 785
                 47899988*99997 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.7
   zf-H2C2_2   2 LrrHirk.Htgek 13 
                 L+ Hi++ H g  
  CDO73268.1 790 LTEHIASvHIGSG 802
                 788**95598865 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 6.2e-09
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFk 25 
                 +rH+ +Htg +p++C++C+  F+
  CDO73268.1 828 SRHMQSHTGHRPFQCDVCKQNFS 850
                 7******************9996 PP

  == domain 5  score: 25.9 bits;  conditional E-value: 6e-09
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 L +H+r Ht+ekpy C+   C+kaF+
  CDO73268.1 855 LAQHMRRHTQEKPYVCDfpGCGKAFA 880
                 678**************666****95 PP

  == domain 6  score: 25.2 bits;  conditional E-value: 9.8e-09
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+ H r+H g kp++C +Cd aF+
  CDO73268.1 884 ALTIHKRTHNGSKPFKCTYCDRAFS 908
                 5888*******************96 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.026        39       2      24 .]     620     644 ..     619     644 .. 0.92
   2 !   13.7   1.3     6e-05      0.09       2      24 .]     774     798 ..     773     798 .. 0.92
   3 ?    5.2   0.1     0.031        46      10      23 ..     821     834 ..     818     835 .. 0.92
   4 !   18.1   0.4   2.3e-06    0.0034       1      23 [.     840     862 ..     840     863 .. 0.96
   5 ?    6.1   0.0     0.016        23       1      23 [.     868     892 ..     868     893 .. 0.93
   6 !   17.1   0.8   4.8e-06    0.0071       1      22 [.     898     919 ..     898     921 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkthH 24 
                 +C++  C ++F+s  +L  H++ +H
  CDO73268.1 620 QCKWagCLATFRSLPDLVGHVNVQH 644
                 799999***************9988 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6e-05
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkthH 24 
                  C++  Cg+sFss+++L  H++++H
  CDO73268.1 774 VCKWadCGQSFSSCDTLTEHIASVH 798
                 688888*****************99 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.031
   zf-C2H2_4  10 FsskkaLlrHlkth 23 
                 F sk++++rH+++h
  CDO73268.1 821 FASKQKISRHMQSH 834
                 99***********9 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 2.3e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C++C+++Fs   +L +H+++h
  CDO73268.1 840 FQCDVCKQNFSEAATLAQHMRRH 862
                 89********99999*******9 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.016
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + C++  Cgk F    aL  H +th
  CDO73268.1 868 YVCDFpgCGKAFAIAGALTIHKRTH 892
                 7899999*****************9 PP

  == domain 6  score: 17.1 bits;  conditional E-value: 4.8e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 fkC++C++ Fs +++L++H+ t
  CDO73268.1 898 FKCTYCDRAFSESSNLSKHVST 919
                 8******************976 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00016      0.24       6      31 ..     620     645 ..     618     650 .. 0.94
   2 !   14.0   1.9     4e-05      0.06       5      37 ..     773     805 ..     771     808 .. 0.88
   3 ?    2.6   2.6      0.15   2.2e+02       4      44 ..     805     846 ..     804     866 .. 0.69
   4 ?    5.0   0.0     0.026        38       6      28 ..     869     891 ..     865     898 .. 0.85
   5 ?   -0.7   0.0       1.5   2.3e+03      12      28 ..     903     919 ..     899     927 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHa 31 
                 +CkW gC + + ++ +++ h+n +H 
  CDO73268.1 620 QCKWAGCLATFRSLPDLVGHVNVQHL 645
                 7*********************9995 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4e-05
     FOXP-CC   5 gvCkWPgCekvledveeflkhlnseHalddkst 37 
                  vCkW +C + +++ +++++h+ s H  + ++ 
  CDO73268.1 773 HVCKWADCGQSFSSCDTLTEHIASVHIGSGRAH 805
                 69************************8877765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
     FOXP-CC   4 kgvCkWPgC....ekvledveeflkhlnseHalddkstaqlrvqm 44 
                 +  C W gC    e+ + + ++  +h++s+  +      q+ v++
  CDO73268.1 805 HYDCFWSGCtrngESGFASKQKISRHMQSHTGH---RPFQCDVCK 846
                 567******888888899999999999875332...234444444 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.026
     FOXP-CC   6 vCkWPgCekvledveeflkhlns 28 
                 vC+ PgC k++  +++++ h ++
  CDO73268.1 869 VCDFPGCGKAFAIAGALTIHKRT 891
                 8***********99999988654 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.5
     FOXP-CC  12 Cekvledveeflkhlns 28 
                 C++++++++++ kh+++
  CDO73268.1 903 CDRAFSESSNLSKHVST 919
                 9*************986 PP

>> zf_ZIC  Zic proteins zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0024       3.6      24      42 ..     626     644 ..     618     645 .. 0.91
   2 ?    1.9   0.0      0.16   2.4e+02       7      45 ..     677     720 ..     673     721 .. 0.72
   3 ?    3.2   0.2     0.065        98      23      44 ..     779     800 ..     770     801 .. 0.78
   4 ?   -0.0   0.0      0.65   9.7e+02      22      39 ..     901     918 ..     893     919 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
                 ----BSSHHHHHHHHHCTT CS
      zf_ZIC  24 CsktFstmhelVtHltveH 42 
                 C  tF ++ +lV H+ v H
  CDO73268.1 626 CLATFRSLPDLVGHVNVQH 644
                 899***************9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
                 -B---B--TT.....-SSS-------BSSHHHHHHHHHCTTT-- CS
      zf_ZIC   7 elsCkWidee.....qgspkkpCsktFstmhelVtHltveHVGG 45 
                 ++ C W d +     q+ p  + +k +  +  l +Hl  +H G 
  CDO73268.1 677 DVACLWEDCQlypspQSVPGPSSGKYYDVLDFLASHLLQDHLGL 720
                 56788888652222255666778899999999999999999995 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.065
                 -----BSSHHHHHHHHHCTTT- CS
      zf_ZIC  23 pCsktFstmhelVtHltveHVG 44 
                  C++ Fs+   l  H++  H+G
  CDO73268.1 779 DCGQSFSSCDTLTEHIASVHIG 800
                 4888899999999999888887 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.65
                 ------BSSHHHHHHHHH CS
      zf_ZIC  22 kpCsktFstmhelVtHlt 39 
                   C++ Fs   +l  H++
  CDO73268.1 901 TYCDRAFSESSNLSKHVS 918
                 57******9999999996 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.033        49       2      22 ..     840     860 ..     839     860 .. 0.92
   2 !   14.1   0.2   2.9e-05     0.043       2      23 ..     898     919 ..     897     919 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.033
                  CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlk 22 
                  f C +C+  F+ + +l +H++
   CDO73268.1 840 FQCDVCKQNFSEAATLAQHMR 860
                  66*****************96 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-05
                  CBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS 23 
                  f C +Cd+ F+ +++l +H+++
   CDO73268.1 898 FKCTYCDRAFSESSNLSKHVST 919
                  99*****************975 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.024        36       7      20 ..     626     639 ..     625     646 .. 0.92
   2 ?    4.3   0.4     0.028        42       7      25 ..     780     798 ..     772     799 .. 0.85
   3 !    6.0   0.4    0.0081        12       2      25 ..     840     863 ..     840     865 .. 0.88
   4 ?    3.0   0.0     0.071   1.1e+02       7      24 ..     875     892 ..     868     895 .. 0.89
   5 !    6.1   0.7    0.0074        11       2      12 ..     898     908 ..     898     918 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.024
   zf-C2H2_6   7 CsksFpslqaLggH 20 
                 C+++F+sl +L gH
  CDO73268.1 626 CLATFRSLPDLVGH 639
                 *************9 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.028
   zf-C2H2_6   7 CsksFpslqaLggHkksHr 25 
                 C+ sF+s + L++H +s +
  CDO73268.1 780 CGQSFSSCDTLTEHIASVH 798
                 **************88754 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0081
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHr 25 
                 + C+vC+  F+    L  H+++H 
  CDO73268.1 840 FQCDVCKQNFSEAATLAQHMRRHT 863
                 89********99999999999995 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.071
   zf-C2H2_6   7 CsksFpslqaLggHkksH 24 
                 C+k F    aL+ Hk++H
  CDO73268.1 875 CGKAFAIAGALTIHKRTH 892
                 999999999********* PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0074
   zf-C2H2_6   2 heCsvCsksFp 12 
                 ++C++C++ F+
  CDO73268.1 898 FKCTYCDRAFS 908
                 89********8 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.8     0.085   1.3e+02       8      28 ..     778     798 ..     771     798 .. 0.84
   2 ?    0.4   0.2      0.37   5.6e+02      14      25 ..     821     832 ..     819     833 .. 0.91
   3 ?    8.6   0.0    0.0011       1.6       5      25 ..     840     860 ..     839     860 .. 0.95
   4 ?    1.0   0.0      0.24   3.6e+02      10      23 ..     875     888 ..     874     891 .. 0.89
   5 ?    6.7   0.2    0.0042       6.3       5      24 ..     898     917 ..     895     918 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.085
  zf-C2H2_11   8 leCGlcftSqlsLsRHlfIvH 28 
                  +CG  f+S   L  H   vH
  CDO73268.1 778 ADCGQSFSSCDTLTEHIASVH 798
                 68********99999998887 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.37
  zf-C2H2_11  14 ftSqlsLsRHlf 25 
                 f+S+   sRH++
  CDO73268.1 821 FASKQKISRHMQ 832
                 999999****96 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0011
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHlf 25 
                 +qC  C+ +f+ +  L  H++
  CDO73268.1 840 FQCDVCKQNFSEAATLAQHMR 860
                 6******************96 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.24
  zf-C2H2_11  10 CGlcftSqlsLsRH 23 
                 CG  f+++++L  H
  CDO73268.1 875 CGKAFAIAGALTIH 888
                 ***********877 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0042
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHl 24 
                 ++C+ C + f+ +  Ls+H 
  CDO73268.1 898 FKCTYCDRAFSESSNLSKHV 917
                 69*****************5 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.44   6.5e+02      14      24 ..     788     798 ..     785     800 .. 0.86
   2 ?    2.1   0.3      0.11   1.6e+02      13      26 .]     824     836 ..     822     836 .. 0.81
   3 ?    2.9   0.1     0.061        91      14      25 ..     853     863 ..     850     864 .. 0.85
   4 ?   10.4   1.5   0.00029      0.44       1      21 [.     898     918 ..     898     919 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.44
   zf-H2C2_5  14 snLkRHlrrkH 24 
                 ++L++H++ +H
  CDO73268.1 788 DTLTEHIASVH 798
                 58******999 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
   zf-H2C2_5  13 ksnLkRHlrrkHtg 26 
                 k    RH++  Htg
  CDO73268.1 824 KQKISRHMQ-SHTG 836
                 66678****.**98 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.061
   zf-H2C2_5  14 snLkRHlrrkHt 25 
                 ++L +H+r  Ht
  CDO73268.1 853 ATLAQHMR-RHT 863
                 689*****.887 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00029
   zf-H2C2_5   1 YKCsqCDYstawksnLkRHlr 21 
                 +KC++CD   + +snL +H+ 
  CDO73268.1 898 FKCTYCDRAFSESSNLSKHVS 918
                 9******************95 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.0    0.0094        14      23      63 ..     826     864 ..     813     865 .. 0.78
   2 ?    7.9   0.3    0.0028       4.2      35      57 ..     895     916 ..     886     919 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0094
     zf-C2HE  23 slseeqskelilktpLkCtrCganfgnkfpkLKeHLeeefe 63 
                 ++s++ +++   ++p++C  C+ + ++  + L +H   + +
  CDO73268.1 826 KISRHMQSHT-GHRPFQCDVCK-QNFSEAATLAQHMRRHTQ 864
                 4455555555.789********.888999999999999876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0028
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeH 57 
                 ++p+kCt+C+ + ++   +L +H
  CDO73268.1 895 SKPFKCTYCD-RAFSESSNLSKH 916
                 58********.555555566555 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.4     8e+03      56      80 ..     626     649 ..     613     666 .. 0.65
   2 ?   -0.1   0.3      0.82   1.2e+03      56      72 ..     780     796 ..     770     815 .. 0.78
   3 ?    4.6   7.5     0.027        40      37      73 ..     825     862 ..     780     871 .. 0.76
   4 ?    9.9   4.3   0.00059      0.88       1      71 [.     841     918 ..     841     921 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.4
   zf-C2H2_2  56 CekefkslealreHmkkkgHckine 80 
                 C  +f+sl +l  H++  +H +++ 
  CDO73268.1 626 CLATFRSLPDLVGHVNV-QHLRLSS 649
                 77888888888888764.5666554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.82
   zf-C2H2_2  56 CekefkslealreHmkk 72 
                 C+++f+s ++l+eH+++
  CDO73268.1 780 CGQSFSSCDTLTEHIAS 796
                 88888888888888764 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.027
   zf-C2H2_2  37 eglleylrekiee.kleClyCekefkslealreHmkkk 73 
                 +++ ++++++  +  ++C +C+++f++ ++l +Hm+ +
  CDO73268.1 825 QKISRHMQSHTGHrPFQCDVCKQNFSEAATLAQHMRRH 862
                 5555555554433379*******************975 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00059
   zf-C2H2_2   1 eClfcekkskeveellehm.....skkhgffipereylvdleglleylrekiee..kleClyCekefkslealreHmk 71 
                 +C +c+++++e+ +l++hm     +k +  ++p   +   + g l++ +++ +    ++C yC++ f++ ++l +H++
  CDO73268.1 841 QCDVCKQNFSEAATLAQHMrrhtqEKPYVCDFPGCGKAFAIAGALTIHKRTHNGskPFKCTYCDRAFSESSNLSKHVS 918
                 599****************777777778888886666666666666555554434479******************86 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4      0.15   2.3e+02       7      32 ..     780     805 ..     775     810 .. 0.89
   2 ?   -3.9   0.0       8.9   1.3e+04      13      23 ..     823     833 ..     820     835 .. 0.74
   3 ?    6.7   0.1    0.0044       6.6       4      26 ..     842     864 ..     840     868 .. 0.84
   4 ?    0.6   0.1      0.35   5.2e+02       4      22 ..     900     918 ..     898     925 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.15
                 T--B-SSHHHHHHHHHHHTSSS--HH CS
   zf-C2H2_9   7 CevkfnswkdlseHilsaasksdaeH 32 
                 C  +f s ++l eHi s    s  +H
  CDO73268.1 780 CGQSFSSCDTLTEHIASVHIGSGRAH 805
                 9999***********99988888877 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.9
                 SHHHHHHHHHH CS
   zf-C2H2_9  13 swkdlseHils 23 
                 s +++s H+ s
  CDO73268.1 823 SKQKISRHMQS 833
                 66899999965 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0044
                 -TTT--B-SSHHHHHHHHHHHTS CS
   zf-C2H2_9   4 CPvCevkfnswkdlseHilsaas 26 
                 C vC+ +f + ++l++H+  +++
  CDO73268.1 842 CDVCKQNFSEAATLAQHMRRHTQ 864
                 99****************65544 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.35
                 -TTT--B-SSHHHHHHHHH CS
   zf-C2H2_9   4 CPvCevkfnswkdlseHil 22 
                 C  C   f + ++ls+H+ 
  CDO73268.1 900 CTYCDRAFSESSNLSKHVS 918
                 999**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 6210.22
//
Query:       CDO73269.1  [L=626]
Description: hypothetical protein BN946_scf185008.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-26   90.7   0.0    5.1e-25   88.4   0.0    2.1  1  Peptidase_M20  Peptidase family M20/M25/M40
      6e-15   55.1   0.0    2.1e-14   53.4   0.0    1.9  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   5.7e-29   5.1e-25       2     206 ..     212     620 ..     211     621 .. 0.85

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 5.7e-29
                    EEEES-BSS.TTCG.GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHHTTTCESE CS
                    xxxxxxxxx.xxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp.eeet.dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegleerekvda 93 
                    +++H+DvVp e  t d+w + p+s+  +   ++GrG+ d+k  ++a+l+a+ al ++g++p++t v++  +dEE+++  Ga++++  lee +++ +
     CDO73269.1 212 MAAHQDVVPvEPATaDEWVHpPYSGFYDGEWIWGRGSGDDKSDLIAGLHAIDALLEQGFQPERTFVWAYGFDEESSGrQGAGSIAVYLEETYGLGG 307
                    789******98888899*********9988********************************************6556888888886667777777 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                    +  l++ e+g+   g+    ++                                                                          
     CDO73269.1 308 IA-LVLDEGGGAY-GT----PYgedvifavpslsekgyldvkieitaqgghssvppkhtaigllsalvveiesnpheaalirgggpynytqctavy 397
                    55.5555555555.44....3333445677778888888888889999************************************************ PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     CDO73269.1 398 apeyperlrrlardsvesdgaleelrdalmeefprfeavlrttqavdlvqggvkvnalpekvsavvnhriaehssvaelkehfidvvvpvathfnl 493
                    ************************************************************************************************ PP

                    ..............................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEES...SSBHTHHHHTTT.EEEEEEE CS
                    ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx...xxxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20 116 ..............................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsg...pggtdarffagi.ptvmifg 176
                                                     v++ +++ p+ +  +  +ka  e+ae   g++   ++v +    g+td+r+++++  +++ + 
     CDO73269.1 494 sveaygqnvsagsgkgghvilsdafgtglePSPVTPMGENDPYQVL-AGTIKATIETAE---GYDaSGVVVAPllqLGNTDTRYYWNLtRNIIRYK 585
                    *****************88887776655533444444555555555.444444444444...555433335555689********99966776665 PP

                    .SSG....GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    .xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 177 .pgs....glaHspnEyvdledlekgikvlarlle 206
                       +     +aH++nE v+     + i++l+++++
     CDO73269.1 586 hLRDidrfNGAHTVNEAVRATGWIESIRFLTKFIL 620
                    444334799***********999999999999987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.58   5.2e+03      85     106 ..     159     180 ..     155     191 .. 0.77
   2 !   53.4   0.0   2.3e-18   2.1e-14       2     101 ..     335     484 ..     334     491 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  85 lpgedpeevleeieeilekeap 106
                 + ++++ e+ +++ e+le+  p
  CDO73269.1 159 VGEDSRWEIFAQLHEYLEETFP 180
                 5567788888888888888765 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 2.3e-18
                 EB-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC..................................................... CS
   M20_dimer   2 ghkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdia................................................... 48 
                 ++kG++++ki+++ ++gHs+ +p++   Ai +l+ l+ e+e+++++ a                                                   
  CDO73269.1 335 SEKGYLDVKIEITAQGGHSSvPPKHT--AIGLLSALVVEIESNPHEAAlirgggpynytqctavyapeyperlrrlardsvesdgaleelrdalmeefp 431
                 79************************..****************9999*************************************************99 PP

                 ...TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer  49 eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeil 101
                   + + rtt +v  ++gG + n++p++++a ++ R+  +++++e++e + +++
  CDO73269.1 432 RFEAVLRTTQAVDLVQGGVKVNALPEKVSAVVNHRIAEHSSVAELKEHFIDVV 484
                 9999*******************************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4102.13
//
Query:       CDO73270.1  [L=235]
Description: hypothetical protein BN946_scf185008.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-10   39.3   0.2    9.9e-10   38.3   0.2    1.6  1  M20_dimer  Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.2   5.5e-14   9.9e-10      48     105 ..      21     126 ..       1     130 [. 0.77

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 5.5e-14
                 ....................................................TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer  48 a................................................eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeie 98 
                 +                                                + + l rtt +v  iegG + n++p++a a ++ R+++++++e+++ +++
  CDO73270.1  21 HsstynatqclatyapsfpaelrrlareaersddalalltdalleeygaAYEVLLRTTQAVDLIEGGVKVNALPERAAAIVNHRIVQESSVEALESRLA 119
                 0444444444444444444444444488888888888888888888888889*********************************************** PP

                 HHHTSCC CS
   M20_dimer  99 eilekea 105
                 e+l+ +a
  CDO73270.1 120 ELLRPLA 126
                 **99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1663.62
//
Query:       CDO73271.1  [L=160]
Description: hypothetical protein BN946_scf185008.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2332  (0.130069); expected 358.6 (0.02)
Passed bias filter:                      929  (0.0518155); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1169.79
//
Query:       CDO73272.1  [L=465]
Description: hypothetical protein BN946_scf185008.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-99  332.2  16.4    4.4e-99  331.8  16.4    1.1  1  SLC35F    Solute carrier family 35
    1.1e-09   37.7   0.2    2.8e-09   36.4   0.2    1.6  1  CRT-like  CRT-like, chloroquine-resistance transporter-like


Domain annotation for each model (and alignments):
>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.8  16.4    5e-103   4.4e-99       2     297 ..      66     360 ..      65     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: 331.8 bits;  conditional E-value: 5e-103
      SLC35F   2 tkkllislalGqvlsllitataltskylaekkinaPvlqtflnyvllalvytgillfrrgaeklleilkrkwykylllalvdveanylvvkayqytslt 100
                 tk ++ sl  Gq++sl+it t++t+++l  ++   P+ qtf+ y +l++ yt+++++r g+  +l+++ + ++ky++la  dve+n+lvvkayqyt+l+
  CDO73272.1  66 TKSFIWSLLAGQLVSLCITCTNVTTSELGSRNWALPTTQTFFLYFSLFVTYTPYTIYRYGFIGWLTMIYKDGWKYIILAACDVEGNFLVVKAYQYTTLL 164
                 6788889999***************************************************************************************** PP

      SLC35F 101 svqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvlagrransgsnpvlGdllvlaGatlyavsnvleeylvkklslvellgllgl 199
                 s +lld++aipv l + +++++ +y++++++gv++c+ G++llv sd l+ +++  +  + +Gd+l+laGatly+ +n +ee++v++ +l+e++g+lg+
  CDO73272.1 165 SCMLLDAWAIPVCLFFCFIYMRPKYHWTQLLGVLICVGGLGLLVASDELT-DKDWPALSRAKGDVLMLAGATLYGFTNATEEFFVRRSPLYEVVGQLGM 262
                 ************************************************99.8888******************************************** PP

      SLC35F 200 fGaiisaiqlailerkelkaihWdaeiallfvgfalvlfllysllpilikktsatsvnlslltsdlyslliglflfhykvswlyllafvviliGlily 297
                 +G +i +iq a le+k++    Wd e + l+v++++++f+ly+++pil +++s++++nlsll sd+y ll glflfhykv+wly+ af+v+++Gli+y
  CDO73272.1 263 WGMLINGIQAAGLEHKDMPLQTWDGENIGLLVAYTAAMFILYTVAPILYRMASSAYYNLSLLSSDFYGLLFGLFLFHYKVYWLYFPAFAVVILGLIIY 360
                 ************************************************************************************************** PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.2   3.1e-13   2.8e-09      34     142 ..     103     211 ..      78     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.1e-13
    CRT-like  34 nqltnfvyvpiffavvlykllltndipketrsfp.krkFaimgaLDavsgilvvigavstsGslqvllnqaiipitllasllllkerysliqylGAlvi 131
                 +  t f+y  +f+ ++ y+++    i + t      +k++i++a D  + +lvv +  +t+    +ll   +ip+ l+++++ ++ +y+++q+lG l+ 
  CDO73272.1 103 T-QTFFLYFSLFVTYTPYTIYRYGFIGWLTMIYKdGWKYIILAACDVEGNFLVVKAYQYTTLLSCMLLDAWAIPVCLFFCFIYMRPKYHWTQLLGVLIC 200
                 3.35689**************9999999877654169***********************999999********************************* PP

    CRT-like 132 ilgvvvvlips 142
                 ++g+ +++ ++
  CDO73272.1 201 VGGLGLLVASD 211
                 **997666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2971.89
//
Query:       CDO73273.1  [L=452]
Description: hypothetical protein BN946_scf185008.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-26   91.6   0.7    1.2e-14   53.9   0.0    4.2  4  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    2.6e-06   27.4   0.0     0.0031   17.6   0.0    2.6  2  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
      0.012   15.5   0.0       0.69    9.8   0.0    2.5  2  RRM_occluded  Occluded RNA-recognition motif
      0.017   15.2   0.7       0.44   10.7   0.0    2.3  2  TcpA          Toxin-coregulated pilus subunit TcpA


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00037       1.7       1      20 [.     169     188 ..     169     192 .. 0.95
   2 !   20.1   0.0   9.6e-08   0.00043      38      66 ..     213     240 ..     201     244 .. 0.83
   3 !   53.9   0.0   2.7e-18   1.2e-14       1      69 [.     277     346 ..     277     347 .. 0.98
   4 !    4.4   0.0    0.0075        33      13      32 ..     414     433 ..     413     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00037
                 EEEESETTTSSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFs 20 
                 l++g ++pd++e++L ++F+
  CDO73273.1 169 LYIGSITPDINEQNLMDFFN 188
                 8******************7 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 9.6e-08
                 EEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  38 skgfafVeFeskedAekAlealngkklgg 66 
                  k++afVeF s edA++A++ ++g  + +
  CDO73273.1 213 EKNYAFVEFRSAEDATAAMA-FDGIIFLN 240
                 59******************.*9988766 PP

  == domain 3  score: 53.9 bits;  conditional E-value: 2.7e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg+Lp++++ee++ el+  fG+ k ++lvr+  +g+skgfaf e+ +++  + A+++lng++lg++ l
  CDO73273.1 277 IFVGGLPTYLNEEQVMELLTSFGELKAFNLVREnGNGPSKGFAFFEYVDPSVTDVAIQSLNGMELGDKYL 346
                 8*****************************************************************9976 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.0075
                 HHHHHHHHTTSCEEEEEEEE CS
       RRM_1  13 eeLkelFskfGpiksiklvr 32 
                 e++ke  +k+G++++++++r
  CDO73273.1 414 EDVKEEAEKYGEVEDLRIPR 433
                 799999************98 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0012       5.2       1      24 [.     166     189 ..     166     231 .. 0.77
   2 !   17.6   0.0   6.8e-07    0.0031       2      29 ..     275     302 ..     274     359 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
       RRM_7   1 srkvFvGGlPiDiteeelkatfke 24 
                 sr++++G + +Di+e++l++ f++
  CDO73273.1 166 SRRLYIGSITPDINEQNLMDFFNS 189
                 899****************99976 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 6.8e-07
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvl 29 
                  k+FvGGlP+ ++ee++++ + +fg+++
  CDO73273.1 275 NKIFVGGLPTYLNEEQVMELLTSFGELK 302
                 69***********************986 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00015      0.69       9      70 ..     174     245 ..     166     250 .. 0.80
   2 ?    3.0   0.0      0.02        90       7      66 ..     280     344 ..     274     351 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
  RRM_occluded   9 lsDtvnkariralveek...........egeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   ++  +n++++ +++++k            +++  +++  +++ A+vef+++++a  a++a dg+ f +  l++
    CDO73273.1 174 ITPDINEQNLMDFFNSKmkemnlgtgapGNPVLAVQCNYEKNYAFVEFRSAEDA-TAAMAFDGIIFLNGPLKI 245
                   555678888888888888888888776558999999**************9997.589******998877766 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.02
  RRM_occluded   7 lplsDtvnkariralveekegeikkivLv......pdheGAivefkdekiagkasLaLdgsefegk 66 
                    +l+   n++++ +l+++  ge+k   Lv      p+++ A+ e+ d + +  a+ +L+g+e+ +k
    CDO73273.1 280 GGLPTYLNEEQVMELLTSF-GELKAFNLVrengngPSKGFAFFEYVDPSVTDVAIQSLNGMELGDK 344
                   56788899***********.9999999983333334455577777777777777777777777666 PP

>> TcpA  Toxin-coregulated pilus subunit TcpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.0     0.054   2.4e+02      47     106 ..      15      74 ..       5      90 .. 0.68
   2 ?   10.7   0.0   9.9e-05      0.44      27      89 ..     268     331 ..     254     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.054
                 HHHHHHH.HHHGGG-SEEEEEES---BGGGG--TTT.S--BGGG-SEEEE-SSTT-B---TT CS
        TcpA  47 dqckslv.ssvadlfsfievkerataavadlgdfet.vvadaaksvGviksikgGaktldlt 106
                 ++ +slv +  a + + i v e a a+ ad    +      a+ ++Gv  +    +k+  lt
  CDO73273.1  15 ANATSLVaTRNATVATAIRVTETASATPADARITKNlLGETATMTAGVSAAEV--TKSHTLT 74 
                 56788883456888899**********99986554414456777888854444..4444444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.9e-05
                 EEETTEEEEEEEEEE.EEE-HHHHHHHHHHHGGG-SEEEEEES---BGGGG--TTTS--BGGG- CS
        TcpA  27 akdnkaankafaikv.sdlskdqckslvssvadlfsfievkerataavadlgdfetvvadaaks 89 
                  +  ++ank f   + + l ++q   l++s ++l +f  v+e++      ++ fe+v++  +  
  CDO73273.1 268 TNVPDSANKIFVGGLpTYLNEEQVMELLTSFGELKAFNLVRENGNGPSKGFAFFEYVDPSVTDV 331
                 455567788776655245899*************************************988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3291.31
//
Query:       CDO73274.1  [L=561]
Description: hypothetical protein BN946_scf185008.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-71  239.8   0.0      1e-46  159.8   0.0    3.5  3  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.0    0.0046        83       1      30 [.      65      94 ..      65     101 .. 0.88
   2 !  159.8   0.0   5.8e-51     1e-46      21     158 ..     105     243 ..      96     243 .. 0.97
   3 !   75.9   0.0   1.6e-25     3e-21     195     450 ..     242     535 ..     241     536 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.0046
                HHHHHHHHHHHHHHHHH--EEEEEHCCCCH CS
     Amidase  1 elveaflkrieavneklnalvtvfieeala 30
                ++++a+++r+  +++ +n+l +v+ + a +
  CDO73274.1 65 DVLDAYIARALLAQDVTNCLTEVVLPPATS 94
                689*****************9999887765 PP

  == domain 2  score: 159.8 bits;  conditional E-value: 5.8e-51
                 EEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT--- CS
     Amidase  21 vtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgsstensvfgpt 118
                 + v++ ea+aqA++ld + a +gk +gpLhGvP+++KD +d+kg ++t G+++ +++p ++Da vv+++++aG ++++kTn ++++++ +++n++ g+t
  CDO73274.1 105 LPVLFAEARAQAKALDVEFAqTGKIRGPLHGVPVTFKDTYDIKGRDSTIGFSSHADHPRPEDALVVKLVREAGGIPICKTNNSQLLFFFECSNPIWGRT 203
                 56899***************9****************************************************************************** PP

                 BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHH CS
     Amidase 119 rNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRi 158
                  NP++ks+++GG SGG+AA++A++++ l+ GtD+GGS R+
  CDO73274.1 204 LNPYSKSYSSGGTSGGEAALLAMDGAALGWGTDIGGSLRC 243
                 **************************************96 PP

  == domain 3  score: 75.9 bits;  conditional E-value: 1.6e-25
                 SSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHH CS
     Amidase 195 rsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilv 293
                 r+v+dl l  r + g++ + ++ +++p        ++ + +++lr G + +d+ ++++p++qrav++a++aL++aGhe +e+elp  ++a++l++ i +
  CDO73274.1 242 RCVDDLELGARLVFGQQGEEYDPAPLP-------YRTPEMPRKLRFGCYLSDNFVKPSPACQRAVREAVEALRKAGHECIEFELPFAPRAMELFLGITA 333
                 89**********************977.......67788899********************************************************* PP

                 HHHHHHTTT-SSSSS....---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHH.......HCSCCCCCCCHHHHHHHHH.HHHHHHHHHCCC....... CS
     Amidase 294 aeassnlarylgvry....erlsetkvlsellpksraellgeevkrrielgny.......alsaeasskyylkaqkvrr.llrrefakafee....... 373
                 a+ +++l+ +l+++     +++s ++ l +  p +++  l +   + +    y       +l a++ +++ +    +r+   r+efa++f +       
  CDO73274.1 334 ADKFKTLSADLNGDPmtrmHPPSPDEELTDARPTRSPGWLRNAAAWVL-SKVYkddvyppVLRATSGKSVDE---FHRWvKQRDEFARMFYRevwdkyg 428
                 *********999999755433333333333333333222222222222.22220111111122221111122...233333456666655556777799 PP

                 BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT...............................TECEEEEEEE CS
     Amidase 374 lDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagksed..............................glPvGvqvig 442
                 +D +++P+ ++p  r           +  ynl + + ++ pv+ +    + ++ + ++                               glPvGvqv+g
  CDO73274.1 429 FDGIIAPVLAMPGLRTXXXXXXXXAWILFYNLVESPVGTLPVTRVRASTDGLTPEHTDPrvgpghgspivesllyradgkgfydaekmdGLPVGVQVVG 527
                 ***************999998889999***********************9888888557*************************************** PP

                 STT-HHHH CS
     Amidase 443 kafqeetl 450
                 +++++e++
  CDO73274.1 528 RKWEDEKV 535
                 ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3854.91
//
Query:       CDO73275.1  [L=184]
Description: hypothetical protein BN946_scf185008.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-23   82.0   0.4    3.9e-23   81.3   0.4    1.4  1  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    5.2e-13   48.4   0.0    8.9e-13   47.7   0.0    1.4  1  Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
    0.00018   21.3   0.4    0.00047   20.1   0.4    1.7  1  TPR_2       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   15.4   0.1      0.048   14.3   0.1    1.7  1  TPR_6       Tetratricopeptide repeat
      0.027   14.3   1.1      0.061   13.2   1.1    1.5  1  TPR_1       Tetratricopeptide repeat
      0.032   14.8   0.2       0.07   13.6   0.2    1.6  1  TPR_19      Tetratricopeptide repeat
      0.052   13.8   0.1      0.079   13.2   0.1    1.4  1  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
      0.064   13.3   0.2       0.16   12.0   0.2    1.7  1  TPR_7       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.4   1.7e-26   3.9e-23       1      52 [.      80     131 ..      80     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.7e-26
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTT CS
  Fis1_TPR_C   1 reclYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedkikkeg 52 
                 reclYylAlGhyk+g+Y+eArr++  lL +EP+n QaqsL  li++++++  
  CDO73275.1  80 RECLYYLALGHYKMGNYEEARRFNALLLDKEPSNLQAQSLAGLIDQRVTRGT 131
                 9***********************************************9976 PP

>> Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0     4e-16   8.9e-13       1      27 [.      39      65 ..      39      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 4e-16
  Fis1_TPR_N  1 qtkFnYAWgLvkSknredqqeGiaLLe 27
                qtkFnYAWgLvkS+ re+q eG++LL 
  CDO73275.1 39 QTKFNYAWGLVKSPMREHQAEGVRLLQ 65
                9************************96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.4   2.1e-07   0.00047       2      22 ..      81     101 ..      80     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
       TPR_2   2 ealynlGlayyklgdyeeAle 22 
                 e+ly+l+l +yk+g+yeeA++
  CDO73275.1  81 ECLYYLALGHYKMGNYEEARR 101
                 78*****************97 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.2e-05     0.048       1      22 [.      81     102 ..      81     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlea 22 
                 ++ly+lal ++k+g++++A++ 
  CDO73275.1  81 ECLYYLALGHYKMGNYEEARRF 102
                 68*****************985 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.1   2.7e-05     0.061       2      21 ..      81     100 ..      81     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 ++ly l++ ++k+g+y+eA 
  CDO73275.1  81 ECLYYLALGHYKMGNYEEAR 100
                 579****************5 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   3.1e-05      0.07      24      64 ..      79     119 ..      58     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-05
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                   e +++LA  ++++g+++eA++  + l++++p + +++sL
  CDO73275.1  79 RRECLYYLALGHYKMGNYEEARRFNALLLDKEPSNLQAQSL 119
                 556778899999**********************7777776 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.5e-05     0.079      20      45 ..      77     102 ..      41     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                 H--HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  20 tespedayllAlclylngqykrAyel 45 
                 t++ e +y+lAl +y++g+y++A ++
  CDO73275.1  77 TRRRECLYYLALGHYKMGNYEEARRF 102
                 56667788888888888888888655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   7.3e-05      0.16       1      33 [.      82     112 ..      82     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 +L++La  + ++G+yeeA +++     l+k+p+
  CDO73275.1  82 CLYYLALGHYKMGNYEEARRFNAL--LLDKEPS 112
                 799*****************9999..7777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1169.19
//
Query:       CDO73276.1  [L=292]
Description: hypothetical protein BN946_scf185008.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-46  156.1  16.7    1.1e-45  155.8  16.7    1.1  1  Peptidase_M50B  Peptidase M50B-like
  ------ inclusion threshold ------
      0.053   13.3   0.8        0.3   10.9   0.8    2.4  1  VPDSG-CTERM     VPDSG-CTERM motif


Domain annotation for each model (and alignments):
>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8  16.7   1.2e-49   1.1e-45       2     198 ..      40     240 ..      39     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 1.2e-49
  Peptidase_M50B   2 laivlalvvlwnk....pllrpfkllvvffHElGHalaalLtGgrvkgielhsdesGvtvtrgpgglgqiltllaGYlgpallGlllillsasgk 92 
                     ++++++++++wn     ++ +p+kl+++ +HEl+H ++a+LtGg v ++ +++d +G t+++g  g + + +l+aGY+g++++G+l+i++++++ 
      CDO73276.1  40 VVYAVVIFAFWNIpgarTVINPLKLFTIGWHELCHISMAILTGGTVLKVCIDPDMGGATIVSG--GHP-TTILAAGYVGSTIFGGLFIMAGFDTL 131
                     78999*******978888999******************************************..876.58**********************99 PP

  Peptidase_M50B  93 a.rlllvllvllllvllllvrnlfglvlllllgallllvlllaedelleflllflgvflllgsvrdi.ddlirrkapesDasqlakltg.vpall 184
                       +++ ++l + l++ l lvrn ++++l++++ +ll++++++++ ++l++++lf+gv+++l++v+di dd   rka++sDa q + l++ +pa++
      CDO73276.1 132 VsKIMSFVLGVGLIAPLALVRNKLTILLTVIYEGLLVGFWFIDHAQALRWYCLFIGVMNALYVVWDIaDDKYFRKANDSDATQWSILYPrIPAHV 226
                     945555577788******************************************************9866666**************998***** PP

  Peptidase_M50B 185 wvvlwllvslafla 198
                     w++lw+++ +a+l 
      CDO73276.1 227 WATLWIVFEIAVLT 240
                     *********99985 PP

>> VPDSG-CTERM  VPDSG-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   3.4e-05       0.3       9      24 ..     237     252 ..     237     253 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.4e-05
  VPDSG-CTERM   9 laLLglgLlgLlglRR 24 
                  ++L+g++Llg+++++R
   CDO73276.1 237 AVLTGFVLLGIAAFKR 252
                  68*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2011.62
//
Query:       CDO73277.1  [L=140]
Description: hypothetical protein BN946_scf185008.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-18   64.8   0.0    1.3e-17   64.4   0.0    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    6.6e-17   61.0   0.8    1.3e-16   60.1   0.8    1.5  1  Histone_H2A_C  C-terminus of histone H2A
    1.4e-06   28.5   0.0    1.9e-06   28.1   0.0    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   2.1e-21   1.3e-17      51     129 ..      19      96 ..       6      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 2.1e-21
                 HHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  51 irkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                   k+q+++++ + ++p+ Rv+r ++k     +r+ a a+++l+++lE+l +e++e+A+++a+++K+++i p+++qlA+r
  CDO73277.1  19 AGKSQSRSAKAGLQFPVGRVHRLLKK-GNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAIR 96 
                 5689*********************9.9999***********************************************9 PP

>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.8   2.1e-20   1.3e-16       1      35 []      99     133 ..      99     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.1e-20
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkkkk 35 
                    EELnkLLg+V+I+qGGV+P I+++LLp k+ k kk
     CDO73277.1  99 EELNKLLGDVVISQGGVVPFINPELLPSKSNKGKK 133
                    9*******************************997 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.2e-10   1.9e-06       2      65 .]      32      95 ..      31      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.2e-10
                   XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++P+ rv +++k+ + a+++   A++++a ++e  + e+++ A   + ++k+  i + h++lA+
     CDO73277.1 32 QFPVGRVHRLLKKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAI 95
                   69************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1000.25
//
Query:       CDO73278.1  [L=118]
Description: hypothetical protein BN946_scf185008.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-26   92.2  10.3    2.8e-26   91.9  10.3    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein
     0.0046   17.3   0.2     0.0075   16.6   0.0    1.4  2  EF-hand_14     EF-hand domain
  ------ inclusion threshold ------
       0.09   13.4   1.3       0.12   13.0   1.3    1.2  1  DUF3824        Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9  10.3   4.7e-30   2.8e-26       1      88 []      17     117 ..      17     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 4.7e-30
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXX..XXXXXXXXXXXXX..........XX-- CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegkdieellangaakla.....aaaaaaaaaaaaaaa..aaaaeekkkeeeee.........Eeed 80 
                    +p+a++ikkvl a+g+e++++r++ l+++l+gkdi+el+a+g+akla     +  a+aa+++aaa++  aaaaeekk+ee+ +         Ee+d
     CDO73278.1  17 SPSAADIKKVLGAVGIEADDERLEKLISELQGKDINELIAEGSAKLAsvpsgG--AVAASGGAAAGGapAAAAEEKKEEEK-KeekfvvriqEESD 109
                    59************************************************752..33333333333300333333333333.24799********* PP

                    SS--STTT CS
  Ribosomal_60s  81 ddmGfgLF 88 
                    ddmGfgLF
     CDO73278.1 110 DDMGFGLF 117
                    ******** PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-06    0.0075      18      50 ..      19      51 ..       7      64 .. 0.83
   2 ?   -3.2   0.1       1.9   1.1e+04      65      65 ..      97      97 ..      86     108 .. 0.46

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
  EF-hand_14 18 svakllkaLaetGirkdDpRLkellkklkkvek 50
                s a++ k+L ++Gi+ dD RL++l+++l+  + 
  CDO73278.1 19 SAADIKKVLGAVGIEADDERLEKLISELQGKDI 51
                678999*********************987655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  EF-hand_14 65 r 65
                 
  CDO73278.1 97 E 97
                2 PP

>> DUF3824  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   2.1e-05      0.12       9      47 ..      72     109 ..      66     114 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
     DUF3824   9 lAeaalaaggaglAaheyakrrerkkaerererrreede 47 
                  A+ ++aagga  Aa e +k  e kk+e+   r +ee +
  CDO73278.1  72 AASGGAAAGGAPAAAAEEKKEEE-KKEEKFVVRIQEESD 109
                 35566666666666666555555.555665555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 805.55
//
Query:       CDO73279.1  [L=154]
Description: hypothetical protein BN946_scf185008.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-35  118.4   0.3    1.4e-34  117.8   0.3    1.3  1  Ribosomal_S19  Ribosomal protein S19
      0.003   17.6   0.0     0.0036   17.4   0.0    1.1  1  FliH           Flagellar assembly protein FliH


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.3   1.6e-38   1.4e-34       1      81 []      52     137 ..      52     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.6e-38
                    .HHHSS.TTCCCHHHHHHHHHHTS-....----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19   1 rslkkg.pfvqesllkkvrkakaek....kkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81 
                    r++++g +++   l+kk+rkak+e     k+ v+kth+Rd++I+Pem+g++vg+ynGk f+ veik+emvGh+LgEFs+T+ pvkh
     CDO73279.1  52 RRFQRGlKRKPMGLIKKLRKAKKEAppneKPAVVKTHLRDMIIVPEMIGSVVGIYNGKVFNSVEIKPEMVGHYLGEFSCTYRPVKH 137
                    67899999*************94444677********************************************************9 PP

>> FliH  Flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     4e-07    0.0036      17      90 ..      30     103 ..      17     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHS--S-HHHHHHHHHHHHTTSCHHHS-EEEEE-HHHHHHHHHHHHHHH CS
        FliH  17 slaeldeeledqlvqlaldiarkvikkelsvdpekilalvrealaklpvdekkitlrvnpdDlelvrehlgeel 90 
                 +l++l +   ++ v+++ + ar   ++ l+ +p+ +++ +r+a ++ p  ek ++++ + +D+ +v e +g++ 
  CDO73279.1  30 ELDKLLDLSNEEFVEIVHARARRRFQRGLKRKPMGLIKKLRKAKKEAPPNEKPAVVKTHLRDMIIVPEMIGSVV 103
                 567777788999******************************************************99988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 918.89
//
Query:       CDO73280.1  [L=1469]
Description: hypothetical protein BN946_scf185008.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  122.7   0.1    2.1e-35  121.8   0.1    1.4  1  RhoGAP    RhoGAP domain
    2.5e-28   98.1  38.1    8.7e-11   41.9   0.8    4.6  4  LIM       LIM domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.1   2.4e-39   2.1e-35       1     147 [.    1063    1213 ..    1063    1217 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 2.4e-39
                  BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHH CS
      RhoGAP    1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlealk 97  
                  P++v+++v+++++ ++  egi+R +g+ +r+kel+ea+d++++++ dl+++++ ++a+lLK+f+relp+pL+t++l+  +i++++  +e+er+++l+
  CDO73280.1 1063 PSFVDDVVSAMRQMDMSIEGIFRRNGNIRRLKELTEAIDRDASSV-DLTQDNPVQLAALLKKFFRELPDPLMTYKLHRLFIATQSLPTEQERKRMLH 1158
                  99******************************************9.***********************************999999********** PP

                  HHHTTS-HHHHHHHHHHHHHHHHHHHTHHH.....H---HHHHHHHHHHHHHT-T CS
      RhoGAP   98 ellekLPkenrdtLryLlehLkrvaenske.....nkMtaknLaivfaPtLlrpk 147 
                  ++   LPk++rdtL++L+ +Lk+va+ ++       kM++ nLa+v+ P++l ++
  CDO73280.1 1159 MVSLILPKAHRDTLEVLFVFLKWVASFAHLdeetgSKMDLPNLATVICPSILYSR 1213
                  **************************888888999****************9875 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.8   9.8e-15   8.7e-11       1      57 [.     191     249 ..     191     250 .. 0.90
   2 !   40.4   7.3   2.8e-14   2.5e-10       1      57 [.     254     309 ..     254     310 .. 0.96
   3 !   14.8   1.3   2.8e-06     0.025       1      27 [.     314     342 ..     314     344 .. 0.83
   4 !   17.3   6.7   4.8e-07    0.0043       1      34 [.     605     637 ..     605     642 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 9.8e-15
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTE.....EEEHHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgk.....lyCkkdylkk 57 
                 Ca+C+k+ + + +   al+ v+H +CF+C+dC+   +++ f+ +dg+     ++C++dy+++
  CDO73280.1 191 CAACGKPMQGAFVR--ALGAVYHLQCFKCMDCGSVVASK-FFPIDGQdgkqhPLCERDYFRR 249
                 *********66555..***********************.899998778899*******986 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 2.8e-14
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT..CEEETTEEEEHHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs.fyekdgklyCkkdylkk 57 
                 Ca+C+   + ++++  a +k++H+e+FtCs+C + + +++ +ye++g++yC+ +y ++
  CDO73280.1 254 CAKCGMALRGSYIT--ACNKKFHVEHFTCSVCPTLFGPQDsYYEHEGDVYCHFHYSTR 309
                 *********99999..***************************************875 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2.8e-06
                 -TTT--BE-TTTEE..EEETTEEEETTTS CS
         LIM   1 CagCnkkiadrelv..lkaldkvwHeeCF 27 
                 CagCn  i ++ +   ++++d++wH+eC+
  CDO73280.1 314 CAGCNSAILKQFVEinRNMRDECWHPECY 342
                 *********8765411689*********7 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 4.8e-07
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-S CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqk 34 
                 C +Cn++++++++ l    ++wH +C+ C++C+k
  CDO73280.1 605 CVKCNQTVEEDCVRL-GTYQRWHSHCLSCQTCGK 637
                 99*******887775.9999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 9163.20
//
Query:       CDO73281.1  [L=602]
Description: hypothetical protein BN946_scf185008.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-35  121.1   0.0      9e-35  120.3   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40
    7.9e-12   45.1   0.1    2.6e-11   43.4   0.1    1.8  1  M20_dimer      Peptidase dimerisation domain
    6.7e-06   25.9   0.0    2.6e-05   24.0   0.0    1.9  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   1.5e-38     9e-35       1     207 []     185     596 ..     185     596 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.5e-38
                    EEEEES-BSS.TTCG.GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHH......... CS
                    xxxxxxxxxx.xxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx......... RF
  Peptidase_M20   1 llgsHlDvVp.eeet.dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakalle......... 83 
                    ll++H+DvVp + +t d+w++ pfs++ +  +l+GrG++d+k g++++l  +++l ++g++p +++vl+f +dEE+++  Ga a+ +         
     CDO73281.1 185 LLAAHQDVVPvNPDTvDEWNYpPFSGHYDGKRLWGRGSSDDKSGLVGILSTIESLLERGFQPTRSVVLAFGFDEEASGlHGASAISKyllstyged 280
                    699********99999***********99559*******************************************888999977777444455555 PP

                    ...HHHT...TTCESEEEEEEEESSSBTCHSTETEEEE.......................................................... CS
                    ...xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................... RF
  Peptidase_M20  84 ...glee...rekvdavfelhieepgileagklaigvv.......................................................... 115
                              + +++ +f+ +i  pgi e+g ++++v                                                           
     CDO73281.1 281 aflL--LvdeGGGFQNLFGGVIATPGIAEKGYIDVRVEvtspgghssvppehtsigmlaqllvhyeanpyevhlsrgtpvywtsqclaahapelph 374
                    5542..04448999999999999999999999999888********************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     CDO73281.1 375 klrkslkkatksdkalkeaerelfkdktfkalvgttqaidlinggvktnalpeqawavvnhriatessvdavkahdtallkglaqdfnlsytafgs 470
                    ************************************************************************************************ PP

                    ............EEEEEEE..EEESHEEEC..CHHHHHHHHHHHHHHH....TSC.EEEE.EES...SSBHTHHHHTTT.EEEEEEE.SSG..... CS
                    ............xxxxxxx..xxxxxxxxx..xxxxxxxxxxxxxxxx....xxx.xxxx.xxx...xxxxxxxxxxxx.xxxxxxx.xxx..... RF
  Peptidase_M20 116 ............kvevell..eggapvtln..dsplvkalaeaaeelf....gek.veli.vsg...pggtdarffagi.ptvmifg.pgs..... 179
                                + ++ +    + +p++++  d+p +++l+ ++++++     ++  ++i vs+   +g+td+r+++++ p ++ +   +s     
     CDO73281.1 471 ritgedggaaygTLTIGDAwgAALEPAPVSpiDAPEYALLSGTIKATYnahrELDgNDNIiVSPgimSGNTDTRYYWALtPHIYRYNhANSgngta 566
                    **********9945555443355667777778888888888888888864322336556657778999********99999776655444223567 PP

                    ..GCTTSTTTEEEHHHHHHHHHHHHHHHHH CS
                    ..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 180 ..glaHspnEyvdledlekgikvlarllee 207
                       ++H++nE +d++++ + i++++ l+++
     CDO73281.1 567 leNGVHTVNESIDVDAFLEMIRFFTTLILN 596
                    8899*********************99975 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   4.4e-15   2.6e-11       1     101 [.     305     454 ..     305     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 4.4e-15
                 SEB-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.................................................... CS
   M20_dimer   1 ighkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdia.................................................. 48 
                 i++kG+++++++v+  +gHs+ +p++   +i +la+ll + e+++ +++                                                  
  CDO73281.1 305 IAEKGYIDVRVEVTSPGGHSSvPPEHT--SIGMLAQLLVHYEANPYEVHlsrgtpvywtsqclaahapelphklrkslkkatksdkalkeaerelfkdk 401
                 689************************..***************77777************************************************98 PP

                 ...TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer  49 eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeil 101
                 + + l +tt ++  i+gG ++n++p++a a ++ R+  ++++++v++  +++l
  CDO73281.1 402 TFKALVGTTQAIDLINGGVKTNALPEQAWAVVNHRIATESSVDAVKAHDTALL 454
                 888999**************************************998766665 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.4e-09   2.6e-05       6      83 ..     174     271 ..     170     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.4e-09
                    ESTTCE.SEEEEEEEE--B-TTT................TCC..T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.SSHHHHHH CS
  Peptidase_M28   6 legkat.devlllgAHyDsvgvg................rgp..ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.gllGSkaf 81 
                    ++g+++  + lll+AH D v+v+                +g+     G  D+ sg + +L +++ l ++g +p+r+v+++f   EEa gl G++a 
     CDO73281.1 174 WKGSDSsLKPLLLAAHQDVVPVNpdtvdewnyppfsghyDGKrlWGRGSSDDKSGLVGILSTIESLLERGFQPTRSVVLAFGFDEEAsGLHGASAI 269
                    56665544567777777777777777777777777666644455556**********************************8888888*****998 PP

                    HH CS
  Peptidase_M28  82 ak 83 
                     k
     CDO73281.1 270 SK 271
                    74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 3762.23
//
Query:       CDO73282.1  [L=370]
Description: hypothetical protein BN946_scf185008.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-09   36.9   0.0    8.9e-09   35.6   0.0    1.6  2  Ribonucleas_3_3  Ribonuclease-III-like
    2.5e-06   28.1   0.0    7.9e-06   26.5   0.0    1.9  2  dsrm             Double-stranded RNA binding motif
    4.5e-05   24.0   0.0    9.7e-05   23.0   0.0    1.6  1  Ribonuclease_3   Ribonuclease III domain


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   7.6e+03      63      77 ..      59      73 ..      57      74 .. 0.85
   2 !   35.6   0.0   1.5e-12   8.9e-09       3     125 ..      78     212 ..      76     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
  Ribonucleas_3_3 63 eslaeiAkelgLgkv 77
                      +la +A+++gL +v
       CDO73282.1 59 STLAAFAHRIGLANV 73
                     58999******9987 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 1.5e-12
  Ribonucleas_3_3   3 elleqaltHkSf......angrk......ghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrlrkg 83 
                      ++++qa tH Sf      +   +       +N  L+ LG+++L l  +ey+ +++ + ++  +   +++ v   + a++A+elg   +lr++++
       CDO73282.1  78 DVIQQACTHPSFiqlftrQ---HpdqplpATNALLATLGNSLLGLFATEYVNSSYPHlPTRVMKAAVSAHVGPSTCANVARELGVMPLLRWQRT 168
                      5789********7665432...123345468*******************9777665488888899999999*******************776 PP

  Ribonucleas_3_3  84 eeetegsgrek..vladaleAliGAiyldkgaevaqefveekil 125
                      ++   +        la++  Al++ +y ++ ++ a++fve+ ++
       CDO73282.1 169 QTTAASAAVLHadALASVPRALTALVYQYRSIRSARRFVEKLFF 212
                      65555544443459999999*******************98665 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   6.2e+03       1      33 [.      57      89 ..      57      90 .. 0.72
   2 !   26.5   0.0   1.3e-09   7.9e-06       1      66 [.     227     293 ..     227     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1
                HHHHHHHHHHHTTSEEEEEEEEEESSTSSSEEE CS
        dsrm  1 pKskLqeycqkkgkppnyeyvseegpphslpkF 33
                p+s L  ++++ g   + +++ + ++++++p+F
  CDO73282.1 57 PRSTLAAFAHRIGLANVVPSTDVIQQACTHPSF 89
                678999999999977666666666666666666 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHH CS
        dsrm   1 pKskLqeycqkkg.kppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedalek 66 
                 pK+ L e + k+g  +p  +  +e+g  ++ p+Fvv +  +  + g+G+gs+ K Ae +AAed l  
  CDO73282.1 227 PKQTLLETVAKYGrERPISRLLKETGRYSNSPVFVVGIFSGADQLGEGFGSSLKMAEYRAAEDSLLR 293
                 89999995555555999999999999999999*******************************9865 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.6e-08   9.7e-05       3      65 ..     109     171 ..     107     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.6e-08
                     HHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..... CS
  Ribonuclease_3   3 LeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpp 65 
                     L++lG + l l++t+y+ + yp +  + + ++ s+ v   + a++a++lg  ++lr+++ +  
      CDO73282.1 109 LATLGNSLLGLFATEYVNSSYPHLPTRVMKAAVSAHVGPSTCANVARELGVMPLLRWQRTQTT 171
                     89******************************************************9887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2669.45
//
Query:       CDO73283.1  [L=946]
Description: hypothetical protein BN946_scf185008.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-10   39.6   0.1    1.2e-09   38.2   0.1    1.7  1  RhoGAP     RhoGAP domain
    2.2e-06   27.6   0.0    5.3e-06   26.4   0.0    1.7  1  DEP        Domain found in Dishevelled, Egl-10, and Pleckstri
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.42   10.4   0.0    1.7  1  Tipalpha   TNF-alpha-Inducing protein of Helicobacter
        4.9    7.3   6.1         46    4.2   0.9    3.1  3  Fib_alpha  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   2.6e-13   1.2e-09      31     149 ..     653     790 ..     643     792 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 2.6e-13
                 HHHHHHHHHHTGGGCT....TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTS..........SSHHHHHHHHHHHHTTS-HHHHHHHHHHH CS
      RhoGAP  31 vkelreafdkgkavds....dleeedvhavaslLKrfLrelpepLltkelyeelieaaks..........edeeerlealkellekLPkenrdtLryLl 115
                 v++lre +++ ++ ++     l+++d  ++as +K++  el  pL  +e  +e+ +++ +           + e+ + +l+++l+kLPk++  +L +++
  CDO73283.1 653 VHHLRETLNAVPSMEDvprdLLQKYDAPVLASGVKLWALELDPPLCMYEGWDEMRKLYPTvgssanqemkPSTEQHIMELQAALQKLPKVQLLVLDTII 751
                 56677777777766667778999********************************966666666777776677777*********************** PP

                 HHHHHHHHTHHH.....H---HHHHHHHHHHHHHT-TSS CS
      RhoGAP 116 ehLkrvaenske.....nkMtaknLaivfaPtLlrpkse 149
                 +hLk +++  +e     n+  +  La+ ++ t+lrpk+e
  CDO73283.1 752 KHLKDLIASTSEsetepNEVYITKLALSMSRTILRPKQE 790
                 ****9988776669999*******************986 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-09   5.3e-06       3      72 .]     343     416 ..     341     416 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.2e-09
                 -SCEEECT.TEEESSE-HHHHHHHHHHHHTS..SSSHHHHHHHHHHHH.HCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   3 klkdrrkh.lktypncftGseavdWLldnld..iedreeAvalgqlLl.dqgliehvedkhqeFrdskqafYqf 72 
                 +l+  r+  l  y++cf+G+e  +WL +n++    d ++A++ ++ L  +++l++ +++ ++ F++ ++ fYqf
  CDO73283.1 343 PLRPVRFPlLGEYQDCFSGEEFASWLNQNVKafNGDLDHAEMAARVLTeKYNLLRRLGELGNDFENADDVFYQF 416
                 566677777899***********************************97789*********99**********9 PP

>> Tipalpha  TNF-alpha-Inducing protein of Helicobacter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.3e-05      0.42      49      95 ..     159     205 ..     155     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.3e-05
                 HHHHHHHHHHHHHHHSTT----S---HHHHHHTHHHHHHHEEEEEEE CS
    Tipalpha  49 rvaihiankikeiykssqnaekkkiddeifkqitqaiaasldkevrl 95 
                  va   +nk+k+ y+s++ +  +  dd+ f  it ++ +  +   +l
  CDO73283.1 159 EVATAEVNKLKNDYLSKTRKADEAEDDARFAPITHPVGDQYTSSPKL 205
                 699999******************************99887766665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.37   1.7e+03      72     105 ..     479     512 ..     429     516 .. 0.61
   2 ?    4.0   0.1     0.012        54      31      70 ..     520     559 ..     510     564 .. 0.89
   3 ?    4.2   0.9      0.01        46      28      94 ..     720     788 ..     716     796 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHH CS
   Fib_alpha  72 kkdndnvikksskeleeeilrlketidaqesnir 105
                 ++  d+ ++   ++l+++ l l+e+i +  ++++
  CDO73283.1 479 AELADQEYRVAVRKLDRQRLGLEERIEEALKTLQ 512
                 2223888888889999999999999988877765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqk 70 
                 + vk+ l++  n l+++s+st+e++e v+++   ++++q 
  CDO73283.1 520 RAVKTVLTQYYNCLAKVSKSTTESNERVETLIAAYQPEQD 559
                 67999999999*********************99999986 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.01
                 CCCCCCCHHHCCCCCCCCCCCCHHH.HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHCCCHHH CS
   Fib_alpha  28 kyekdvkkdlekleneleeisnstk.eaeelvkeikdslrekqkskkd.ndnvikksskeleeeilrlk 94 
                 ++++++++++ +l+  l+++ + +    ++++k++kd ++++ +s+++ n+ +i+k++ ++ + ilr k
  CDO73283.1 720 EMKPSTEQHIMELQAALQKLPKVQLlVLDTIIKHLKDLIASTSESETEpNEVYITKLALSMSRTILRPK 788
                 567889999**********9987761568899******9998887765379999999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6373.26
//
Query:       CDO73284.1  [L=629]
Description: hypothetical protein BN946_scf185008.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-09   37.9  10.3    2.9e-09   36.9  10.3    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    2.5e-08   33.3   0.9    4.4e-08   32.5   0.3    1.6  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9  10.3   3.3e-13   2.9e-09       1      38 [.      59      94 ..      59      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.3e-13
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                +aCd C+k K++Cd+  P CsnC   +++Ct y++   
  CDO73284.1 59 KACDACHKSKRRCDGTAP-CSNCYYASKNCT-YTDAAG 94
                59****************.************.988765 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.3   4.9e-12   4.4e-08       2     118 ..     191     300 ..     190     309 .. 0.83
   2 ?   -2.4   0.0      0.21   1.9e+03     147     159 ..     379     390 ..     356     408 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.9e-12
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili..hedfsspssslwilqs 96 
                   ++ff +++pq  ++hkpsf+++       + +  +++llla++al+a++ +s +++ ++ +       + ++++a ++   +     + +s+ + q+
    CDO73284.1 191 QIFFAHCNPQRMVIHKPSFSSDL------SLNRVPTHLLLAVCALAAPLHKSVASKASQARLA----GVPYFQEALSVMfdNSGRLLCEPSVSTAQA 277
                   79*********************......********************99999887555554....66788888888865333334567799**** PP

  Fungal_trans  97 Llllelyektssd.ralherhhg 118
                   L lle+ e + s  ++ h r++g
    CDO73284.1 278 LCLLEMHEVAASHsWTRHFRYFG 300
                   ********999955999988877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.21
  Fungal_trans 147 eeaesrrRlwwaa 159
                   e  e+ rR++w +
    CDO73284.1 379 E-GECTRRCFWLI 390
                   4.6999*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4314.78
//
Query:       CDO73285.1  [L=120]
Description: hypothetical protein BN946_scf185008.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-32  111.8  20.3    2.3e-32  111.6  20.3    1.0  1  V-ATPase_G    Vacuolar (H+)-ATPase G subunit
  ------ inclusion threshold ------
      0.026   14.6  13.3      0.026   14.6  13.3    2.0  2  ATP-synt_B    ATP synthase B/B' CF(0)
      0.068   12.8   8.9      0.082   12.5   8.9    1.0  1  NCKAP5        Nck-associated protein 5, Peripheral clock prot
       0.14   12.1   4.3       0.16   12.0   4.3    1.0  1  S_layer_C     S-layer like family, C-terminal region
       0.58   10.5  13.9        1.3    9.4  12.6    2.1  2  Muted         Organelle biogenesis, Muted-like protein
       0.68   10.4  20.8        1.3    9.4  20.8    1.5  1  V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
        1.8    8.5  12.1        2.2    8.2  12.1    1.1  1  TarH          Tar ligand binding domain homologue
        6.2    7.4  10.6       0.62   10.6   5.5    1.8  2  DUF16         Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6  20.3     1e-35   2.3e-32       1     104 [.       4     107 ..       4     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 1e-35
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G   1 sqsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvkknkeavvkellk 99 
                 +qsq+Iq+LL+AEkeAa+iv++Ar+++ +rlk+A++eA+kEieey++ ke+ef+ +ea+++g+ ++++++++kete k +e++ ++++nk++vvk+ll+
  CDO73285.1   4 QQSQSIQTLLEAEKEAAKIVQQARQYRVQRLKDARSEAAKEIEEYKKSKEAEFRAFEASHAGNIQAVQASVDKETEAKQQEIRAQYEANKDKVVKKLLD 102
                 69************************************************************************************************* PP

                 HHTSX CS
  V-ATPase_G 100 lvldv 104
                 +v+ v
  CDO73285.1 103 RVVLV 107
                 **876 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6  13.3   1.2e-05     0.026      52     104 ..       4      56 ..       1      64 [. 0.91
   2 ?    1.6   4.9      0.12   2.7e+02      82     120 ..      67     105 ..      57     110 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
  ATP-synt_B  52 llaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeI 104
                 ++++  q l eA++eAa+i+++A++ + +  ++++ ea++e+e  k+s++ae 
  CDO73285.1   4 QQSQSIQTLLEAEKEAAKIVQQARQYRVQRLKDARSEAAKEIEEYKKSKEAEF 56 
                 67788899*****************************************9986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
  ATP-synt_B  82 keeieaeaeaeaerlkesAaaeIeqekdralaeLreqvv 120
                  ++ +a++ +e e  +++ +a+ e+ kd+++++L ++vv
  CDO73285.1  67 IQAVQASVDKETEAKQQEIRAQYEANKDKVVKKLLDRVV 105
                 455555555666666666666666667777777766665 PP

>> NCKAP5  Nck-associated protein 5, Peripheral clock protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   8.9   3.7e-05     0.082      66     158 ..      16     105 ..      10     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
      NCKAP5  66 ekkelkigsslggkqsksekkkekKkeelrkaleeelarvsevardgrgkskklskiaddcevqmdqeqsqlsvmytgvtkDnFmkeLLnrvd 158
                 ek  +k  ++  ++q + ++ k+ + e  ++ +e  +++ +e  + ++++  +++ +++++++  + +q+++   y+  +kD+ +k+LL+rv 
  CDO73285.1  16 EKEAAK--IVQQARQYRVQRLKDARSEAAKEIEEYKKSKEAEFRAFEASHAGNIQAVQASVDKETEAKQQEIRAQYEA-NKDKVVKKLLDRVV 105
                 555555..7888999999999999988877777777777777778889999888999999999999999999988876.9***********96 PP

>> S_layer_C  S-layer like family, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.3     7e-05      0.16      48     147 ..      16     118 ..       4     120 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-05
   S_layer_C  48 ekledkvvglalkykgdkladikdkdkvdianyaklkfdD..klsvyfkideekevelivgekvkvlsadvkaekikakaeqvvkltaPivvLDtEv.. 142
                 ek   k+v+ a +y+++ l+d ++++  +i++y k k  +  +  +   + + + v+++v ++ ++++++++a+   +k ++v+kl   +v +  E   
  CDO73285.1  16 EKEAAKIVQQARQYRVQRLKDARSEAAKEIEEYKKSKEAEfrAFEASHAG-NIQAVQASVDKETEAKQQEIRAQYEANKDKVVKKLLDRVVLVKPELhr 113
                 4557799***************************8777666555555555.88999******************9999999999998888887777766 PP

   S_layer_C 143 eldsv 147
                 +l++v
  CDO73285.1 114 NLQKV 118
                 66655 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.6   0.00056       1.3      69     143 ..      18      93 ..       2      96 .. 0.70
   2 ?   -0.5   0.0      0.63   1.4e+03       6      30 ..      95     119 ..      92     120 .] 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00056
       Muted  69 elnkkleaale.kverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekveelkekYsele 143
                 e  k +++a++  v+rl++  +e+ k+ +e  ++ke e +a +++   ++q  +++vD+e e k +e++++Y+  +
  CDO73285.1  18 EAAKIVQQARQyRVQRLKDARSEAAKEIEEYKKSKEAEFRAFEASHAGNIQAVQASVDKETEAKQQEIRAQYEANK 93 
                 2333355554426788888877777766666666777888888888899***********************9755 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.63
       Muted   6 eiysRLlDhRpviqgEikyfvkeFE 30 
                 ++ + LlD  + ++ E +  ++++E
  CDO73285.1  95 KVVKKLLDRVVLVKPELHRNLQKVE 119
                 7889999999999999887777666 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  20.8    0.0006       1.3       3     103 ..       5     105 ..       3     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0006
                   XXHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHH CS
  V-ATPase_G_2   3 ssrllkeLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearlqqAvelil 99 
                   +s+ ++ L e E+e ++ + +Ar+   ++++ A+ eAa+ ++e +++ +a   ++e+  a +++++++ ++++ ea+ q++r++ ea  ++ v++ l
    CDO73285.1   5 QSQSIQTLLEAEKEAAKIVQQARQYRVQRLKDARSEAAKEIEEYKKSKEAEFRAFEASHAGNIQAVQASVDKETEAKQQEIRAQYEANKDKVVKKLL 101
                   67779999******************************999999999998889999999999********************************999 PP

                   HHH- CS
  V-ATPase_G_2 100 kaVl 103
                   + V+
    CDO73285.1 102 DRVV 105
                   9885 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  12.1   0.00097       2.2      76     168 ..       1      91 [.       1      98 [. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00097
                 TTTSSSSSSHHHHHHHHHHHHHHHHHHHHHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH  76 ladeaedakellaraeeslaqseeawkaYlalprtaeeeealaaelkakykalqdglapliaaleagnleaffdlptqkiqplfealyaayea 168
                 +a+++ ++ ++l +ae+  a++ ++ ++Y+    ++   +++a+e+ + yk+ +++   +++a +agn++a+++ ++++++++ ++ +a+yea
  CDO73285.1   1 MAGQQSQSIQTLLEAEKEAAKIVQQARQYRVQRLKD-ARSEAAKEI-EEYKKSKEAEFRAFEASHAGNIQAVQASVDKETEAKQQEIRAQYEA 91 
                 67778888899999****************999999.666677776.57******************************************99 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.67   1.5e+03      75      81 ..      17      23 ..       2      42 .. 0.40
   2 ?   10.6   5.5   0.00028      0.62      22      96 ..      42     112 ..      35     120 .] 0.67

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.67
                HH..... CS
       DUF16 75 geelnkv 81
                +e+ + v
  CDO73285.1 17 KEAAKIV 23
                1111111 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00028
                 HHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.........HHHHHHHHHHHHH CS
       DUF16  22 rkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln..kvdetleliletLqkin 96 
                  k+++e+k+s +++++ +ea    +  +i++++  v+k +e     ++e+ aq e+ +   v++ l+ ++    +++
  CDO73285.1  42 AKEIEEYKKSKEAEFRAFEAS---HAGNIQAVQASVDKETEAK---QQEIRAQYEANKdkVVKKLLDRVVLVKPELH 112
                 59*****************85...6688888888888877643...4444444442223245566665555545555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3048  (0.170004); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 838.99
//
Query:       CDO73286.1  [L=1246]
Description: hypothetical protein BN946_scf185008.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-61  208.3   0.3    2.5e-61  207.1   0.3    1.7  1  Symplekin_C   Symplekin tight junction protein C terminal
    1.3e-49  168.9   0.6    2.4e-49  168.0   0.1    1.7  2  DUF3453       Domain of unknown function (DUF3453)
    0.00021   20.4   1.1      0.012   14.6   0.1    2.5  2  DUF913        Domain of Unknown Function (DUF913)
  ------ inclusion threshold ------
        0.2   10.9   0.7        9.6    5.4   0.7    2.6  3  V-ATPase_H_N  V-ATPase subunit H


Domain annotation for each model (and alignments):
>> Symplekin_C  Symplekin tight junction protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.3   5.5e-65   2.5e-61       1     185 [.     989    1184 ..     989    1185 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.1 bits;  conditional E-value: 5.5e-65
  Symplekin_C    1 DvrflipilgglskeevislLpklikl......nekvvkevfrrllaass.......ekseeekekspltpaellvalhnlekkkkevelkslvea 83  
                   ++rflipi+++++k+++++ Lp++++       ++++v++vf++++++++       ++  + ++++ ltp el+v lh+ e   ke+ lks++ea
   CDO73286.1  989 NARFLIPIIAEMDKADILRHLPRIVSIlngtpePKNLVRSVFSSIVQVPPetfgkvtSNLPRVRQSELLTPGELMVLLHQSE---KEIGLKSAIEA 1081
                   58************************99999988********************9985556666778***************...99********* PP

  Symplekin_C   84 ldlclsekevftqevlaaalqqlveeeplpllfmrtviqalkkypslrefv.sniLprLikkqvWknkklWkgfircakklkpksfeallqLPeeq 178 
                   + +c+s++e+f++e+laa+++qlv+e++lp+lf+rtviqa+++y sl +fv +++L+rLi+k++W+n  lW+gfir+ak ++p+sf allqLP++q
   CDO73286.1 1082 IGICFSMTEIFRSEILAAVMNQLVDEPNLPTLFLRTVIQAVTTYRSLVGFVsTTLLSRLITKKIWTNAPLWEGFIRLAKLIAPASFGALLQLPKDQ 1177
                   ************************************************************************************************ PP

  Symplekin_C  179 leellkk 185 
                   l+el++k
   CDO73286.1 1178 LRELVDK 1184
                   ****987 PP

>> DUF3453  Domain of unknown function (DUF3453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.0   0.1   5.4e-53   2.4e-49       2     223 ..     110     323 ..     109     335 .. 0.89
   2 ?   -4.0   0.0       2.1   9.5e+03     139     160 ..     741     762 ..     738     777 .. 0.69

  Alignments for each domain:
  == domain 1  score: 168.0 bits;  conditional E-value: 5.4e-53
     DUF3453   2 pavvkkvIqaaasiYplvlrliiknsedsetWekmtalKdeIlrl.vdssdndgvrlaaiKFiervilvqtrgvadrneskeqseislsqvpdnhpils 99 
                 +++vk ++q++ ++Y l++r  + n+++   W+ +++ K +Il+  + ++ n gvrlaa+KF++rvilvqtrgv+d++  +++ + +ls++p++hp++s
  CDO73286.1 110 VNTVKVAVQCFPTVYALLFRSSCVNRNNRRPWDVLSQAKARILEFvWTPHVNNGVRLAAVKFMQRVILVQTRGVSDPRL-QNKDDPNLSMCPTDHPFIS 207
                 579************************99****************999999**********************999555.6679*************** PP

     DUF3453 100 prkLeaEAkrlLdrlLkvlqeasiltsslviatlnslasiakqRpqfankilqallsfnplkkpnlpptlsklqvksvektlkvlllnllknssehplq 198
                  ++LeaE+ +lL++++++l ++   ++ +++a++ns a ++k+Rp+++++++++l  + p +++ +p     l ++svek++++ll+++ + ++ +p++
  CDO73286.1 208 VQALEAEGIKLLEGVVRLLFHS--NNPDVLSAIINSWANLVKKRPALVELVVSSLTAWSPVRLEGQPY----LVIRSVEKSVRILLNHISRTPQGAPFM 300
                 *****************98765..4556********************************77766666....*******************9999**** PP

     DUF3453 199 skiqqlleklgallqeiaaviaeet 223
                 ++iq+ l  ++ ++++   +i+e++
  CDO73286.1 301 GQIQAFLHAQAGRMEQA--AIQEKA 323
                 ********655444444..453333 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.1
     DUF3453 139 iakqRpqfankilqallsfnpl 160
                 ++ qRp++ + ++++ll+++++
  CDO73286.1 741 LVAQRPSLRTEAMTMLLELTTH 762
                 6678888888888888888763 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.7e-06     0.012     223     308 ..     737     840 ..     730     913 .. 0.66
   2 !    3.9   0.1    0.0047        21      90     134 ..    1097    1142 ..    1071    1144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-06
      DUF913 223 sfdELvRhhpsLktaiikavikmlarvvelgkeka...akllved...................assasskseasssssssetkeeek..ssededvem 297
                 ++ ELv ++psL+t++++++++++   +++ +  a   +k ++ d                   +    s+ +++++++++++++ ++  +s+++  e+
  CDO73286.1 737 ALRELVAQRPSLRTEAMTMLLELTTHPEKITRGAAintVKRWIPDaqpmadiirdfalqllrrlQ----SRPKPAQAPAEKSEEVGMQdaESKNA--EV 829
                 789*****************************999888777777799999999999998754431....22222222222222222222222222..22 PP

      DUF913 298 edaeeeteses 308
                 ++ae+++e+++
  CDO73286.1 830 KNAEKAEEKPP 840
                 22211111111 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0047
      DUF913   90 tdrllrnlidssqLlks.LrkIienakvfGssvwslAvnilsdfih 134 
                     ++ +l+d+++L++  Lr++i+  +++ s v  +++++ls +i 
  CDO73286.1 1097 LAAVMNQLVDEPNLPTLfLRTVIQAVTTYRSLVGFVSTTLLSRLIT 1142
                  5678999********9549***********************9996 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7    0.0022       9.6      92     174 ..      34     121 ..      14     131 .. 0.80
   2 ?    2.2   0.0      0.02        91      48      97 ..     210     259 ..     205     266 .. 0.88
   3 ?   -3.2   0.0      0.86   3.9e+03      73     129 ..     714     776 ..     710     811 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0022
  V-ATPase_H_N  92 elflslakkeeqd.....pwkpflk.llnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllq 174
                   +l+  l++  e+      + + +lk l++  d+  ++  l ll   ++ ++ + ++   ++ ++ l++L  +l++s+ + +++av+++ 
    CDO73286.1  34 DLLVTLRDALENHpslfiLCSTLLKtLTSAGDSLLKRWVLDLLHFAICRSNLSLEQ-RTQLADQSLEILAGLLNDSNVNTVKVAVQCFP 121
                   444444444444444677789999*555566*********************9999.55777*************************86 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.02
  V-ATPase_H_N  48 lldedgpqyvklllnLlsklskedtlqyiLvlidDllsedksrvelflsl 97 
                    l+++g +  + +++Ll + ++ d+l  i +  + l+++++++vel+ s+
    CDO73286.1 210 ALEAEGIKLLEGVVRLLFHSNNPDVLSAIINSWANLVKKRPALVELVVSS 259
                   67778888888899*******************************99875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.86
  V-ATPase_H_N  73 lqyiLvlidDllsedksrvelflslakkeeqd......pwkpflkllnrqddfivllalrlla 129
                    q iL+++ + + e + r+  f+ l++   q+       + ++l+l++++++++   a++ + 
    CDO73286.1 714 PQDILTMLRESCVEPDRRQMGFAALRELVAQRpslrteAMTMLLELTTHPEKITRGAAINTVK 776
                   567777777777776667777777777777666677778888888888888777666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.51
# Mc/sec: 7316.28
//
Query:       CDO73287.1  [L=353]
Description: hypothetical protein BN946_scf185008.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-35  123.3   0.3      1e-35  123.3   0.3    3.1  2  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7  14.8         1   1.8e+04      18      60 ..      40     126 ..      30     167 .. 0.39
   2 !  123.3   0.3   5.8e-40     1e-35       1     149 []     185     325 ..     185     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: -6.7 bits;  conditional E-value: 1
  RNA_pol_Rpc4  18 q............................................................kavsaaeddkseaesqsaekakaeeeskaekasgae 54 
                   +                                                            +                +e a ++++++a+++++++
    CDO73287.1  40 KkqgdsaapslkrekeqegagavkkeegeedlysdpdegveivdmdnvrqmdwmapeslrkE----------------REGAGKKKKKSAKVKKEEK 120
                   44444555555555555555555555555555555555555555544444444443333211................1111111111111111111 PP

  RNA_pol_Rpc4  55 aeekks 60 
                   +e+k +
    CDO73287.1 121 EEGKGK 126
                   111111 PP

  == domain 2  score: 123.3 bits;  conditional E-value: 5.8e-40
  RNA_pol_Rpc4   1 egrlylfQfPpllPslkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGviGkLlvhkSGkv 97 
                   ++rly+fQfP+++P +k   + ++e+   + ++++++ ++a+ e+ ++k s ae++  k++++   +++++k++++  ++  +GviG+L++++SG+v
    CDO73287.1 185 QERLYFFQFPQPFPVFK---MPESENAVLKGKTKAEGGNAAKSEDGGKKVSFAEDT--KPPAAI-GASTEGKTESTAEEQKVDGVIGQLEIYQSGAV 275
                   689*************9...333343334444444444445555555555554444..333333.345556666666667788************** PP

  RNA_pol_Rpc4  98 elrlGg.illevspGaqpsFlqevvvveeedekekealvLGkvnkkfvvtPdv 149
                   +lr+G+ i ++v+ ++qpsFlq++v+v+ e   +k+++vLG+vn++f+vtPd+
    CDO73287.1 276 KLRMGNgIVMDVTAATQPSFLQHAVHVDGE---NKRLCVLGEVNRRFIVTPDI 325
                   *****99*********************97...89****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2320.05
//
Query:       CDO73288.1  [L=209]
Description: hypothetical protein BN946_scf185008.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.8   0.1      0.093   12.8   0.0    1.9  2  SL4P      Uncharacterized Strongylid L4 protein


Domain annotation for each model (and alignments):
>> SL4P  Uncharacterized Strongylid L4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-06     0.093      14      41 ..       7      34 ..       3      37 .. 0.91
   2 ?   -1.0   0.0       0.1   1.9e+03      36      69 ..     164     196 ..     158     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-06
        SL4P 14 ekvprftItYkDkddLfekfkkklkelg 41
                ++++++ ItY+D ++L+++  kk++e++
  CDO73288.1  7 QEPEHLRITYNDVHNLIRESAKKIAEWK 34
                67999*********************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.1
        SL4P  36 klkelgipldevywvd.edgdrilirnaddLleav 69 
                 kl+e  ip +  y++  e +d  +i+  d+L+e  
  CDO73288.1 164 KLAE--IPAEIPYYAGdEIEDVWDIEEHDRLAEQS 196
                 5544..55565555551556688899998888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1484.32
//
Query:       CDO73289.1  [L=773]
Description: hypothetical protein BN946_scf185008.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-11   44.4   2.4    6.5e-08   33.0   0.1    2.4  2  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   3.6e-12   6.5e-08       1      85 [.       8     114 ..       8     126 .. 0.89
   2 !   11.0   0.3   2.2e-05      0.39     130     146 .]     130     146 ..     117     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.6e-12
         HET   1 YeaLSYvWgdsk......................ekeeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelv 77 
                 Y+ LS+vW +s+                      ++ + + ++++  l++ +++ ++ + + g+ y W D  CI++++++e s+ +++m d Y+ A+l+
  CDO73289.1   8 YAILSHVWAKSEkdlyypestyqfvlqiqahaeqQTGRASSKSTVPLLPAKIREFCKLAARFGYDYAWGDTFCIDKTSSSELSEAITSMFDWYQYADLC 106
                 999*****999999*****99999999988876545555555578889*************************************************** PP

         HET  78 ivalgses 85 
                 +v+l++ +
  CDO73289.1 107 CVYLADVK 114
                 ***98765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.2e-05
         HET 130 eellespwfkRvWvlQE 146
                 + +++s+wf+R+W+lQE
  CDO73289.1 130 QCFCKSQWFRRGWTLQE 146
                 6789************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 5160.59
//
Query:       CDO73290.1  [L=235]
Description: hypothetical protein BN946_scf185008.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-48  160.2   1.5    1.5e-22   79.3   0.0    3.0  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.56   10.1   9.6        2.9    7.8   4.7    2.4  2  Rick_17kDa_Anti  Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   5.2e-13   4.7e-09      45      93 ..      12      60 ..       1      64 [. 0.85
   2 !   43.0   0.1   3.5e-15   3.2e-11      28      94 ..      75     136 ..      73     138 .. 0.96
   3 !   79.3   0.0   1.7e-26   1.5e-22       3      93 ..     141     233 ..     139     235 .] 0.93

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 5.2e-13
                CSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 45 saaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                ++++ +++ +i  +eG+r+l+rG++  +++  pa+a+ f++ye +k++ 
  CDO73290.1 12 YTGVGNAFTRISSTEGMRALWRGVSSVIMGAGPAHAVHFGAYELVKEWA 60
                3448899***************************************986 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 3.5e-15
                 HHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  28 vvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++K r+q++k++ ++     ++ + +++y++eGl ++y  +  +l++++p +a++f++ye+lk ll+
  CDO73290.1  75 LIKQRMQLHKSEFRS-----AITCARTVYRTEGLGAFYISYPTTLTMTVPFTAVQFTVYEQLKALLN 136
                 79***********99.....999*****************************************996 PP

  == domain 3  score: 79.3 bits;  conditional E-value: 1.7e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +s++ +++aGglagava+ vttPldv+Kt lqt ++s+  + ++   ++d+++ i+  +Gl+g+ rGl p++l  +p++al++++ye++k  +
  CDO73290.1 141 YSPATHIVAGGLAGAVAGAVTTPLDVAKTILQTRGTSADREIRECrgMVDAFRIIWTRDGLKGFARGLAPRVLTFMPSNALCWLSYEFFKAAI 233
                 57899*******************************99877766688*******************************************876 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2    0.0032        28      13      29 ..      60      76 ..      59      76 .. 0.89
   2 ?    7.8   4.7   0.00032       2.9      24      36 ..     148     160 ..     139     162 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0032
  Rick_17kDa_Anti 13 aGaai.gggggrvlGavv 29
                     aG+++ g+ +++++++++
       CDO73290.1 60 AGGNVeGA-SNQWIATLI 76
                     89***777.*******97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00032
  Rick_17kDa_Anti  24 vlGavvGAaaGav 36 
                      v+G+++GA+aGav
       CDO73290.1 148 VAGGLAGAVAGAV 160
                      4444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1704.80
//
Query:       CDO73291.1  [L=174]
Description: hypothetical protein BN946_scf185008.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-25   89.1   0.0    1.9e-25   88.6   0.0    1.3  1  TFIID_30kDa      Transcription initiation factor TFIID 23-30k
  ------ inclusion threshold ------
      0.021   14.8   0.0       0.36   10.9   0.0    2.2  2  Bromo_TP         Bromodomain associated
      0.023   15.3   0.0      0.023   15.3   0.0    2.2  2  Ribosomal_60s    60s Acidic ribosomal protein
      0.064   13.8   0.9       0.19   12.3   0.2    1.9  2  FoP_duplication  C-terminal duplication domain of Friend of P
        0.1   12.3   0.0       0.18   11.5   0.0    1.3  1  DUF3464          Photosynthesis affected mutant 68
       0.79   10.1   4.2       0.36   11.2   1.8    1.7  2  CCDC53           Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   6.2e-29   1.9e-25       1      50 []      75     124 ..      75     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 6.2e-29
  TFIID_30kDa   1 PiIPDavtayyLekaGletsDprlarlvsLaaqKFisdiaadAyqyskir 50 
                  P+IP++vt+yyL++ G+e++D+rl+rl+sLaaqKF+sdiaadAyq+++ir
   CDO73291.1  75 PLIPNEVTEYYLQRVGFECDDVRLKRLLSLAAQKFVSDIAADAYQHARIR 124
                  9************************************************8 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.36      16      52 ..      86     122 ..      80     129 .. 0.91
   2 ?    1.4   0.0      0.11   3.1e+02      56      74 ..     148     166 ..     143     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                 HHHHT-SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    Bromo_TP  16 leeaGfdsaeesaLEtLteiaqkYirelgeqaksfae 52 
                 l+ +Gf++ +  +  +L+  aqk+++ ++++a ++a 
  CDO73291.1  86 LQRVGFECDDVRLKRLLSLAAQKFVSDIAADAYQHAR 122
                 899*****************************99984 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
                 -SS--HHHHHHHHHHTT-- CS
    Bromo_TP  56 RseptlkDvvltLqelgin 74 
                 +++ t++D+  +L e gin
  CDO73291.1 148 KTTLTMEDLSAALAEYGIN 166
                 788899***********97 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.1       1.8   5.3e+03      52      52 ..      39      39 ..       9      65 .. 0.54
   2 ?   15.3   0.0   7.6e-06     0.023      10      71 ..      85     148 ..      79     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
                   X CS
  Ribosomal_60s 52 a 52
                    
     CDO73291.1 39 G 39
                   1 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.6e-06
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  10 vlkaagveveaarvkllvkalegkdieellangaakla..aaaaaaaaaaaaaaaaaaaeekkk 71 
                     l+ +g e++++r+k l++  ++k + ++ a++++ +   a aa + + a + +++a a +k k
     CDO73291.1  85 YLQRVGFECDDVRLKRLLSLAAQKFVSDIAADAYQHARirANAAGGRSRASQPSGPASARDKTK 148
                    5899******************************997676555555555555555555555544 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.63   1.9e+03      18      28 ..      45      55 ..      28      67 .. 0.49
   2 ?   12.3   0.2   6.3e-05      0.19      19      61 ..     125     165 ..     115     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.63
  FoP_duplication 18 rgrgrggrggr 28
                     ++r++++++  
       CDO73291.1 45 QSRPNTAQNAE 55
                     22222222221 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.3e-05
  FoP_duplication  19 grgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaYmg 61 
                      ++ +ggr +  +++ g    +  k+k+ lt e+L a+L +Y  
       CDO73291.1 125 ANAAGGRSR-ASQPSGPASAR-DKTKTTLTMEDLSAALAEYGI 165
                      233333333.33333333333.3699***************76 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.1e-05      0.18       7      67 ..      21      93 ..      16      95 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.1e-05
     DUF3464  7 pfepkkkrkk.kpkkkkkskkakkeekekakeeekkdkeekeeaa...........iPevVskRmirRvalfs 67
                p  p+ + ++ +p+ ++  + ++++++ ++++++++++++k  a+           iP++V++  ++Rv++ +
  CDO73291.1 21 PSAPSPHAQQpTPEYTQPGPSSSQQSRPNTAQNAEQARKDKTLAEfllmlddyeplIPNEVTEYYLQRVGFEC 93
                55554333331333333333333333334555555555555555578999*******************9987 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.8   0.00012      0.36      79     129 ..      19      70 ..       2      94 .. 0.56
   2 ?   -1.4   0.0      0.91   2.7e+03      83      90 ..     133     140 ..      97     162 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
      CCDC53  79 seaaaaaaqaeeasqaeesaeeeaeeqeesesk...nvltvkdDpryakYfkml 129
                  +++a +++a++++++ ++  +++++q+++  +   n+ ++++D ++a+++ ml
  CDO73291.1  19 PTPSAPSPHAQQPTPEYTQPGPSSSQQSRP--NtaqNAEQARKDKTLAEFLLML 70 
                 111222222222222222222222222222..12248899999******99998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.91
      CCDC53  83 aaaaqaee 90 
                 +a+++  +
  CDO73291.1 133 RASQPSGP 140
                 11111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 1170.84
//
Query:       CDO73292.1  [L=367]
Description: hypothetical protein BN946_scf185008.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-19   69.8   0.1    5.9e-19   69.1   0.1    1.3  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   3.3e-23   5.9e-19       1     115 [.       9     135 ..       9     139 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.3e-23
                   EEEEEETTSHHHHHHHHHHHHTTTTE.......EEEEEECSSHHHHHHH.....HHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHT CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrle.......evvalldpdaeraeav.....aesfgveaysdleelladpeidavivatpngtheelakaalea 85 
                   l+++ii +G+i+ ++++ l    ++        ++va+ +++ e+a+++      ++ +++ay  ++e+ a+p+++av+++tp ++h+e a+aalea
    CDO73292.1   9 LKWGIISTGRIAMDFVKDLLVDPKTRgttdvghKIVAVGSRSVESAQKFikayaPNEADIKAYGTYNEVYANPNVNAVYIGTPHTLHYENALAALEA 105
                   58999**********99999996666999********************999999999*************************************** PP

                   T-EEEEESSS-SSHHHHHHHHHHHHHHTS- CS
  GFO_IDH_MocA  86 gkhvllEKPlattveeakelvelaekkgkl 115
                   gkhvl+EK  + + +e+k+l++la++k+  
    CDO73292.1 106 GKHVLCEKATTSNAAELKALLKLAKEKKLF 135
                   **************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2689.00
//
Query:       CDO73293.1  [L=502]
Description: hypothetical protein BN946_scf185008.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0018   18.5   0.6     0.0036   17.5   0.6    1.5  1  CTNNB1_binding  N-terminal CTNNB1 binding
  ------ inclusion threshold ------
      0.064   13.1   0.0          3    7.8   0.0    2.4  2  DUF5380         Family of unknown function (DUF5380)
       0.24   11.3   4.3        0.5   10.3   4.3    1.4  1  zf-CCCH         Zinc finger C-x8-C-x5-C-x3-H type (and simila
        6.7    7.4   6.9         12    6.5   6.9    1.5  1  zf-CCCH_2       RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> CTNNB1_binding  N-terminal CTNNB1 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6     8e-07    0.0036      79     184 ..     306     473 ..     285     481 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8e-07
  CTNNB1_binding  79 ekardsleelrkqqdgglykksvysgypflmlpdaltspylsn.gslsps............................................. 127
                     ++ ++ l+    +q g++ ++++      l+l + ++spy++n +sl+++                                             
      CDO73293.1 306 RELEERLAS-DLEQAGAMDQQTSGIDLTSLLLASPTQSPYIDNpSSLATEspdvtlpealpehfeeppagpqfevesaflqdtdppfmtdgrgrv 399
                     333333332.2344455555554444444555555899999983456666999999999999999999999999999999999999999999999 PP

  CTNNB1_binding 128 ................snkvpvvqpshavhpLtpLitYsnehfspgsh..pshlpadidpktgvpRpphtsdlsp 184
                                         + + ++h v+p ++L+   ++h sp++h  p h+p+++ +++ v R++ +s +s+
      CDO73293.1 400 vwsnatssrgcegrrvRAASSSIVHPHIVKPNADLLAAGDDHASPSNHgsPMHHPSQLPQQQLVRRRSLPS-VST 473
                     9999999999999999444455669********************98766899999999999999876555.555 PP

>> DUF5380  Family of unknown function (DUF5380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.027   1.2e+02      44      64 ..     382     402 ..     361     411 .. 0.79
   2 ?    7.8   0.0   0.00067         3      47      64 ..     479     496 ..     468     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.027
     DUF5380  44 tfksdksanflsdGaGhvvfr 64 
                 +f  d    f++dG G+vv+ 
  CDO73293.1 382 AFLQDTDPPFMTDGRGRVVWS 402
                 688899999**********85 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00067
     DUF5380  47 sdksanflsdGaGhvvfr 64 
                   +sa+f++dG G+vvf 
  CDO73293.1 479 DKRSAEFITDGRGRVVFA 496
                 4579*************6 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.3   0.00011       0.5       3      25 ..      65      91 ..      64      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
                CHCBCHHHHHS....--TTGGG-SSBS CS
     zf-CCCH  3 telCrffmrtG....yCkyGdrCkFaH 25
                ++ C++f r+     +C++G  C + H
  CDO73293.1 65 RVKCKYFERSKpskrFCPFGKDCFYKH 91
                578********************9999 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.9    0.0027        12       1      17 [.      67      91 ..      67      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0027
   zf-CCCH_2  1 pCrffpn.......C.tnpkCpFaH 17
                +C++f         C ++++C ++H
  CDO73293.1 67 KCKYFERskpskrfCpFGKDCFYKH 91
                5***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3843.49
//
Query:       CDO73294.1  [L=297]
Description: hypothetical protein BN946_scf185008.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-55  186.5   0.0    7.8e-55  186.1   0.0    1.1  1  Pkinase        Protein kinase domain
    4.3e-33  114.7   0.0    5.6e-33  114.3   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0078   15.2   0.1       0.01   14.8   0.1    1.3  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.021   14.7   0.1      0.053   13.4   0.1    1.6  1  APH            Phosphotransferase enzyme family
      0.026   13.9   0.2      0.053   12.9   0.0    1.6  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.079   12.9   0.0       0.15   12.0   0.0    1.5  1  zf-C3HC4_5     Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.0   2.6e-58   7.8e-55       2     200 ..      91     294 ..      90     296 .. 0.94

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 2.6e-58
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                 + +++lG+G++G V++a ++ +g+ vA+K++ +  +k    k+vlrEi++l++++h+ni  l++v  ++d   +   +  g +l+++++  + l++e++
  CDO73294.1  91 KLIRELGSGAYGFVISAADEISGEPVAIKMVTRALEKVALAKRVLREITLLRHFSHENITGLIDVDCTPDLSEMHIHLH-GADLHQIIKSGQPLTNEHV 188
                 56899*********************************999***********************999887777666554.566******9999****** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 + +++q+++g++y+Hs++++HrDlKp N+L++++ elKi+DFGl++ ++s  +     +t++v+t++Y+APE++  ++ y +++DvW++G+i++elltg
  CDO73294.1 189 QYFVYQVFRGMKYIHSASVVHRDLKPGNLLVNSDCELKICDFGLSRGFNSAPDdnptmMTEYVATRWYRAPEIMlVYKAYNTPIDVWAIGCIMAELLTG 287
                 **************************************************99999******************989*********************** PP

                 S-STTTS CS
     Pkinase 194 kppfsge 200
                 kp+f+g+
  CDO73294.1 288 KPLFKGK 294
                 ****954 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   1.9e-36   5.6e-33       2     203 ..      91     288 ..      90     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 1.9e-36
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEE.EESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgv.ctkeepllivteyvkgGdLlkfLrkkek 97 
                  +l ++lG+Ga+G V+++  +     + + Va+K++++  ++    +++l+e++++++++h+ni  l+ v ct + + +     ++g dL++ +++   
   CDO73294.1  91 KLIRELGSGAYGFVISAADE----ISGEPVAIKMVTRALEKVAlAKRVLREITLLRHFSHENITGLIDVdCTPDLSEM--HIHLHGADLHQIIKSG-- 180
                  5789***********99887....7899*******888877765899*********************9455444444..4468899******997.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS.-HHHHH.HSEEEHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWm.apEslk.ekkftsksDvWsfG 192
                  ++lt +++  f++qv +Gm+y++s ++vHrdl   N L++++   ki+DfGL+r  ++  +   +  ++ +  +W+ apE++  +k +++  DvW+ G
   CDO73294.1 181 QPLTNEHVQYFVYQVFRGMKYIHSASVVHRDLKPGNLLVNSDCELKICDFGLSRGFNSAPDDnPTMMTEYVATRWYrAPEIMLvYKAYNTPIDVWAIG 278
                  *******************************************************9666555256667779999988***8761666*********** PP

                  HHHHHHHTTSS CS
  Pkinase_Tyr 193 vllwEiftlge 203
                   ++ E++t g+
   CDO73294.1 279 CIMAELLT-GK 288
                  ******99.55 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.4e-06      0.01     229     256 ..     208     235 ..     116     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-06
  Haspin_kinase 229 EHRdLhldniLvdknlnvtlidlklsRl 256
                     HRdL+ +n Lv++  +  ++d+ lsR 
     CDO73294.1 208 VHRDLKPGNLLVNSDCELKICDFGLSRG 235
                    5*************************95 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.8e-05     0.053     166     194 ..     205     231 ..     200     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++++H+Dl+pgNllv+  d ++  + Df+
  CDO73294.1 205 ASVVHRDLKPGNLLVN-SDCEL-KICDFG 231
                 789*************.44554.466666 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.1   6.4e+03      56      71 ..     132     147 ..     119     150 .. 0.68
   2 ?   12.9   0.0   1.8e-05     0.053     103     165 ..     171     229 ..     167     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
         Kdo  56 travrEfrllkrLeea 71 
                  r+ rE+ ll+ + ++
  CDO73294.1 132 KRVLREITLLRHFSHE 147
                 5677888888877665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.8e-05
         Kdo 103 qdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliD 165
                  dL +++++++ l +e  +  + +v r ++ +h+a v H+dl + n+l++ +     e+ + D
  CDO73294.1 171 ADLHQIIKSGQPLTNEHVQYFVYQVFRGMKYIHSASVVHRDLKPGNLLVNSDC----ELKICD 229
                 589999999888999999999****************************9987....444445 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     5e-05      0.15      18      47 ..     216     245 ..     204     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
  zf-C3HC4_5  18 eflinpeCYhkmCesCvdRlFsdGPnqCPv 47 
                 ++l+n++C  k+C+    R F++ P++ P+
  CDO73294.1 216 NLLVNSDCELKICDFGLSRGFNSAPDDNPT 245
                 58************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2312.72
//
Query:       CDO73295.1  [L=353]
Description: hypothetical protein BN946_scf185008.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0015   18.0   0.0     0.0021   17.5   0.0    1.2  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-07    0.0021     236     264 .]       4      32 ..       1      32 [. 0.94

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 236 eakdllkkllkkdpkkRltaeellqhpyl 264
                  a+dll+kllk dp +R+++ ++l+hp+l
  CDO73295.1   4 AAIDLLEKLLKFDPAERISVVDALEHPWL 32 
                 799*************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2450.39
//
Query:       CDO73296.1  [L=326]
Description: hypothetical protein BN946_scf185008.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-97  323.3   0.0    1.1e-96  323.1   0.0    1.0  1  ParA           NUBPL iron-transfer P-loop NTPase
    2.1e-08   34.2   0.0    3.6e-08   33.5   0.0    1.4  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
    4.6e-05   22.7   1.4     0.0022   17.2   0.1    2.8  3  ArsA_ATPase    Anion-transporting ATPase
    0.00019   21.4   0.1     0.0015   18.5   0.1    2.0  1  AAA_31         AAA domain
      0.002   17.6   0.0     0.0071   15.9   0.0    1.8  1  CBP_BcsQ       Cellulose biosynthesis protein BcsQ
  ------ inclusion threshold ------
      0.012   15.1   0.0       0.02   14.5   0.0    1.3  1  AAA_25         AAA domain
      0.019   14.4   0.0        1.2    8.6   0.0    2.5  2  Fer4_NifH      4Fe-4S iron sulfur cluster binding proteins, N
       0.02   14.8   0.1      0.045   13.7   0.1    1.5  2  RsgA_GTPase    RsgA GTPase
      0.045   12.9   0.0      0.066   12.4   0.0    1.2  1  NB-ARC         NB-ARC domain
        0.1   12.1   0.2       0.21   11.1   0.2    1.5  1  TF_Zn_Ribbon   TFIIB zinc-binding
       0.13   12.0   0.1       0.21   11.3   0.1    1.2  1  VirE           Virulence-associated protein E
        0.5   10.4   0.1        0.5   10.4   0.1    1.9  2  Zn_Tnp_IS1595  Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.1   0.0  7.3e-100   1.1e-96       2     245 ..      69     319 ..      68     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 323.1 bits;  conditional E-value: 7.3e-100
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgveeekpeqsekkliPvea.kgikvmSigfllesedeavvwrGpmksk 98 
                 vk++i+vlSgKGGVGKSt++++l +a+a ++++++g++D+Di+Gpsip++lg+ +e++++s++++ Pv++ +++ vmS+gf+l+s+++a++wrGp+k++
  CDO73296.1  69 VKRKILVLSGKGGVGKSTFTAQLGWAFAaDEQVQTGIMDVDICGPSIPTILGIASEQVHASSSGWSPVYVqDNLGVMSVGFMLPSSKDAIMWRGPKKNG 167
                 99*************************857889************************************9899************************** PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqkl...plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteif..gkg 192
                 +i+q+lkdv+wg+lDyLi+D+PPGt+De+l+++q l    ++gav++ttpqeval+dv+++i++++kv ++vlG+veNmsgfvcp+c+++++if  ++g
  CDO73296.1 168 LISQFLKDVDWGDLDYLIVDTPPGTSDEHLSIVQYLkesGIDGAVVITTPQEVALQDVRREIDFCRKVGIRVLGLVENMSGFVCPNCKNESQIFkpSTG 266
                 ************************************777788****************************************************7778* PP

        ParA 193 ggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 gg++lae++++++lg++pldp+i +++d g +++ + p+s+a+ a+ +i++k+
  CDO73296.1 267 GGRRLAEDMNIEFLGAVPLDPRIGKSADYGVSFLDEYPDSPASIAYLDIIDKI 319
                 *************************************************9997 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.4e-11   3.6e-08       1     125 [.      73     296 ..      73     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.4e-11
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep............................................ 54 
                 i++ s+kGGvGK+t++a L+ a+a  ++ ++   D+D  +++  ++ g   ++                                              
  CDO73296.1  73 ILVLSGKGGVGKSTFTAQLGWAFAAdEQVQTGIMDVDICGPSIPTILGIASEQVHasssgwspvyvqdnlgvmsvgfmlpsskdaimwrgpkknglisq 171
                 789*********************966888889999999999998999888888899****************************************** PP

                 ....................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS....-TTCHHHHHH CS
                 ....................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        CbiA  55 ....................................................dlkrllellealgkkkall.lkiagvvlnrvdgene.etllkealee 99 
                                                                     d+ r + +++++g+++  l  ++ g+v    ++e + ++    + ++
  CDO73296.1 172 flkdvdwgdldylivdtppgtsdehlsivqylkesgidgavvittpqevalqDVRREIDFCRKVGIRVLGLvENMSGFVCPNCKNESQiFKPSTGGGRR 270
                 ****************************************************99999999999998744448777777765555554404444445556 PP

                 HHHHCTS-EEEEEE--CCHCCCCHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 100 lkqrygvpvlgviprdeavaeaparg 125
                 l +++++++lg +p d ++ +++  g
  CDO73296.1 271 LAEDMNIEFLGAVPLDPRIGKSADYG 296
                 66666999999999999999888776 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.5e-06    0.0022       2      28 ..      72      98 ..      71     147 .. 0.86
   2 ?    2.4   0.0      0.05        74     114     136 ..     170     191 ..     165     206 .. 0.79
   3 ?    1.1   0.0      0.12   1.8e+02     198     243 ..     200     245 ..     191     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.5e-06
                 EEEEEEESTTSSHHHHHHHHHHHHHHT CS
  ArsA_ATPase  2 kvilvgGKGGVGKttvsaatavklsek 28
                 k+++++GKGGVGK+t  a ++   +  
   CDO73296.1 72 KILVLSGKGGVGKSTFTAQLGWAFAAD 98
                 7899***************99986654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.05
                  HHHHHHHHCSSSSEEEEESBSCC CS
  ArsA_ATPase 114 eellkyvkeeeydvvvlDtaPTG 136
                   ++lk v+  + d++++Dt+P G
   CDO73296.1 170 SQFLKDVDWGDLDYLIVDTPP-G 191
                  5789999999*********99.4 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.12
                  HHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE CS
  ArsA_ATPase 198 eeiltdpertsfrlVvipEklslkEteRaikeLkkygikvdavivN 243
                   + l++  +   +++++p +++l++ +R i    k+gi+v  ++ N
   CDO73296.1 200 VQYLKESGIDGAVVITTPQEVALQDVRREIDFCRKVGIRVLGLVEN 245
                  56667777777789999**************999*99999888877 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     1e-06    0.0015       2     129 ..      71     192 ..      70     239 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQana.ttglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielv 98 
                 + I +   KGGvGK+T + +l+ a+a  ++ ++ ++D+D  + +  t lgi ++++        ++++  + +++   ++nl ++     L + ++ ++
  CDO73296.1  71 RKILVLSGKGGVGKSTFTAQLGWAFAaDEQVQTGIMDVDICGPSiPTILGIASEQV-------HASSSGWSPVYV---QDNLGVMSVGFMLPSSKDAIM 159
                 67889999**************9998677889999999987754156677755553.......224566666777...567888888888888888777 PP

      AAA_31  99 elekkeeil.kellekvk.deYDyiiiDcpPsL 129
                     k++ l +++l++v+  + Dy i+D+pP  
  CDO73296.1 160 WRGPKKNGLiSQFLKDVDwGDLDYLIVDTPPGT 192
                 777776665599999998457999999999954 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06    0.0071       2      61 ..      72     136 ..      71     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.7e-06
    CBP_BcsQ   2 kvlalqGvRGGvGttsllaaLawalhe...lgesvlviDlspd...nlLrlhFnvdieqregwara 61 
                 k+l+l+G +GGvG+++ +a L+wa+ +   ++  ++ +D++      +L +  ++ +++++gw   
  CDO73296.1  72 KILVLSG-KGGVGKSTFTAQLGWAFAAdeqVQTGIMDVDICGPsipTILGIASEQVHASSSGWSPV 136
                 5788999.8****************75111556788899986412257888888888888888765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05      0.02      32      62 ..      70     100 ..      48     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkp 62 
                 + ++ +l G +g+GK+t++ +l+ a a +++
  CDO73296.1  70 KRKILVLSGKGGVGKSTFTAQLGWAFAADEQ 100
                 678899*****************99997665 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00078       1.2       3      28 ..      74      99 ..      71     118 .. 0.83
   2 ?    3.1   0.0     0.036        54     194     246 ..     269     321 ..     229     324 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00078
   Fer4_NifH  3 iaiyGkGGiGksttsqnlsaalaemg 28
                + + GkGG+Gkst ++ l  a+a++ 
  CDO73296.1 74 LVLSGKGGVGKSTFTAQLGWAFAADE 99
                4578************9999988765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.036
   Fer4_NifH 194 ekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkile 246
                 +++ae+++++ l +vP+d  + k+        +  p+s+ +  y ++ +ki++
  CDO73296.1 269 RRLAEDMNIEFLGAVPLDPRIGKSADYGVSFLDEYPDSPASIAYLDIIDKIKK 321
                 57999****************99887777777777888889999999999976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     3e-05     0.045      95     119 ..      67      91 ..      61     105 .. 0.85
   2 ?   -3.6   0.0         6     9e+03      16      47 ..     208     237 ..     201     245 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
                  HHCTTSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinal 119
                  + +k k+ vl G+ GvGKSt+  +l
   CDO73296.1  67 SSVKRKILVLSGKGGVGKSTFTAQL 91 
                  56789***************99877 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6
                  --EEEEEEESTTTT--HHHHHHHHHHHHHTT- CS
  RsgA_GTPase  16 vdqllivvslkepelslnlldrfLvlaeekgi 47 
                  +d ++++++ +  e+ l+ + r + ++ + gi
   CDO73296.1 208 IDGAVVITTPQ--EVALQDVRREIDFCRKVGI 237
                  55555555554..5555555555555544444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.4e-05     0.066      15      39 ..      66      90 ..      60     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
                TTTSCSEEEEEEESTTSSHHHHHHH CS
      NB-ARC 15 kdelqslvvalvGmgGvGKttlakq 39
                + ++++ ++ l+G+gGvGK+t  +q
  CDO73296.1 66 MSSVKRKILVLSGKGGVGKSTFTAQ 90
                6788899**************9988 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00014      0.21       1      18 [.     249     266 ..     249     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                   EEETTTTCEECHEETSTT CS
  TF_Zn_Ribbon   1 ykCPnCgstnlveDperg 18 
                   ++CPnC+++++++ p++g
    CDO73296.1 249 FVCPNCKNESQIFKPSTG 266
                   79********99988887 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014      0.21      53      83 ..      72     102 ..      67     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
        VirE  53 fvlvLvGkqgsgKstfleklgeewftdslks 83 
                  +lvL Gk g+gKstf ++lg ++ +d+  +
  CDO73296.1  72 KILVLSGKGGVGKSTFTAQLGWAFAADEQVQ 102
                 589********************99987655 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.6       5.9   8.9e+03      21      27 ..      38      44 ..      34      49 .. 0.64
   2 ?   10.4   0.1   0.00033       0.5      17      30 ..     247     261 ..     246     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.9
  Zn_Tnp_IS1595 21 CPhCgsr 27
                   C  C+++
     CDO73296.1 38 CAGCANQ 44
                   5555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00033
  Zn_Tnp_IS1595  17 ngfvCPhCgsr.kay 30 
                    +gfvCP+C+++ +++
     CDO73296.1 247 SGFVCPNCKNEsQIF 261
                    58********95544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2174.01
//
Query:       CDO73297.1  [L=389]
Description: hypothetical protein BN946_scf185008.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-15   56.1   2.8    1.1e-05   26.1   0.0    5.6  6  WD40         WD domain, G-beta repeat
    1.8e-07   31.4   0.0        5.1    7.5   0.0    5.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00069       6.2       9      36 ..      49      74 ..      39      74 .. 0.86
   2 !   12.1   0.1   3.2e-05      0.28       8      36 ..      89     118 ..      84     118 .. 0.86
   3 !   26.1   0.0   1.2e-09   1.1e-05       4      38 .]     137     172 ..     135     172 .. 0.89
   4 ?   -3.4   0.0         2   1.8e+04      24      38 .]     224     238 ..     219     238 .. 0.70
   5 ?    4.0   0.0     0.012     1e+02      11      38 .]     257     284 ..     246     284 .. 0.81
   6 ?    0.2   0.0      0.18   1.7e+03      13      35 ..     364     384 ..     352     385 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00069
                SSSSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  9 GHssvtslafspdgawlasGsdDgtvri 36
                G+  +t++++ +d++ +++G  Dg+v+i
  CDO73297.1 49 GQ--ITAFDVASDQSQFVTGYHDGSVYI 74
                55..99999999999999**77****87 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.2e-05
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvri 36 
                 + H s vts++f p+++ +++++ D ++ i
  CDO73297.1  89 RSHlSTVTSIRFFPSSRVILTAGADFSLSI 118
                 689999************999888998865 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 1.2e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  rt++GH   vts a    g+ ++sGs+Dgt+r+Wd
  CDO73297.1 137 ARTFRGHtRAVTSTAIIARGRNILSGSKDGTIRLWD 172
                 689****555****9999999999***********9 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                  l+++  Dg+  ++d
  CDO73297.1 224 VLFCALQDGSFELFD 238
                 466666799988876 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.012
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 s   +la+++++ +la+Gs  g + ++d
  CDO73297.1 257 SALQALAYDRNHGLLATGSASGLIALYD 284
                 4578999************999888776 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.18
                 EEEEEEETTSSEEEEEETTSEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvr 35 
                 v+ +++  ++ w  s+ dDg vr
  CDO73297.1 364 VRFVRVAGHNVW--SAADDGIVR 384
                 555666777778..555699997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011        96      37      87 ..      47      98 ..      40     103 .. 0.82
   2 !    7.5   0.0   0.00057       5.1      37      80 ..     143     186 ..     131     197 .. 0.82
   3 !    7.2   0.0   0.00071       6.4      47      80 ..     219     252 ..     197     260 .. 0.86
   4 !    4.6   0.0    0.0046        41      38      68 ..     256     286 ..     251     291 .. 0.89
   5 ?    1.1   0.0     0.056     5e+02      14      34 ..     359     379 ..     356     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.011
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.avtcl 87
                 ++++++++    d + ++ +y+dg+v +   +s++ + s +  s+  +vt++
   CDO73297.1 47 RKGQITAFDVASDQSQFVTGYHDGSVYIRPTSSTNALPSATSRSHLsTVTSI 98
                 678899999999999*************999999999888877765456666 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00057
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  + + v+s a    g+ +  + +dg++rl d++s+  ++ l  ++
   CDO73297.1 143 HTRAVTSTAIIARGRNILSGSKDGTIRLWDVSSASQIRILASGT 186
                  5677888888899********************99887766655 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00071
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  + d+k+L  a +dg+ +l+d  +++ v  ++v+ 
   CDO73297.1 219 ETDDKVLFCALQDGSFELFDLRTKRAVFRSPVGP 252
                  679**********************999988876 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0046
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldae 68 
                   s  ++La+  +  lLa + + g + l+d+ 
   CDO73297.1 256 RSALQALAYDRNHGLLATGSASGLIALYDVR 286
                  567889**********************985 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.056
  ANAPC4_WD40  14 tedgellvfRlngqrvwtlee 34 
                  t+ + ++  R+ g++vw++++
   CDO73297.1 359 TDCDAVRFVRVAGHNVWSAAD 379
                  666789999********9933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2948.16
//
Query:       CDO73298.1  [L=349]
Description: hypothetical protein BN946_scf185008.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-30  104.2   0.1    7.1e-30  102.7   0.1    1.8  1  SCA7        SCA7, zinc-binding domain
     0.0091   15.6   0.3      0.017   14.7   0.3    1.4  1  zf_C2H2_13  Zinc finger domain
  ------ inclusion threshold ------
          1    9.3   3.4        1.2    9.1   0.3    2.1  2  Jak1_Phl    Jak1 pleckstrin homology-like domain
        7.2    6.7   8.0       0.31   11.1   1.6    1.9  2  MAS20       MAS20 protein import receptor


Domain annotation for each model (and alignments):
>> SCA7  SCA7, zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.1   1.6e-33   7.1e-30       3      67 ..     140     204 ..     138     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.6e-33
        SCA7   3 kkkkkkkkkkkevdvdkqCGVilpngkpCtRsLtCksHslgakraVegRskpfdvLlaeykkkkq 67 
                 kkk+++++ k++vd+dkqCGVi+++g pC+RsLtCksH++gakraV+gRskp+d+Ll e++++++
  CDO73298.1 140 KKKATRPRVKGPVDYDKQCGVINDKGLPCSRSLTCKSHAMGAKRAVQGRSKPYDELLLEWNRANN 204
                 789999*******************************************************9986 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   3.8e-06     0.017      20      38 ..      64      82 ..      52      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-06
  zf_C2H2_13 20 CnkCGkPisleaivdHLen 38
                C+ C kP+  +ai+dH en
  CDO73298.1 64 CKDCYKPVLRSAILDHAEN 82
                ****************998 PP

>> Jak1_Phl  Jak1 pleckstrin homology-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   0.00027       1.2      31      84 ..      85     143 ..      71     148 .. 0.79
   2 ?    0.6   0.2      0.11   5.1e+02      57      74 ..     213     230 ..     185     243 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
    Jak1_Phl  31 evlvtGteGiqwrlvqee.....essegeksrkskekkkskkkkaeskkkkqeekekke 84 
                 +v   G++Gi+ ++ ++e      s+   ++r+ +++kk+kk+kae++ ++q + +kk 
  CDO73298.1  85 KVRTGGKKGIKGKVADTEsagmrVSHPFMDVRNVEADKKGKKRKAEDELEDQGAPKKKA 143
                 577789********999966653333445589999***********9999998877764 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
    Jak1_Phl  57 rkskekkkskkkkaeskk 74 
                 r+sk+++k++k++ + +k
  CDO73298.1 213 RESKAERKERKEREKAEK 230
                 223333333333222222 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.6      0.65   2.9e+03      33      50 ..     122     139 ..     114     157 .. 0.44
   2 ?   11.1   1.6   6.9e-05      0.31      17      54 ..     199     236 ..     197     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.65
       MAS20  33 rkkqakaakeeeeaekae 50 
                 +k ++++a++e e + a 
  CDO73298.1 122 KKGKKRKAEDELEDQGAP 139
                 222222222222222222 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.9e-05
       MAS20  17 rkRrsdpefkkklrerrkkqakaakeeeeaekaekkkk 54 
                 + R ++p+f + +++++k+++k+ ke+e+aek++ + +
  CDO73298.1 199 WNRANNPNFVEPVKRESKAERKERKEREKAEKKRLAME 236
                 679***************99977766666666554442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2273.66
//
Query:       CDO73299.1  [L=1597]
Description: Glycoside Hydrolase Family 13 protein [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.1e-161  537.4   0.0     4e-161  537.0   0.0    1.1  1  hDGE_amylase  Glycogen debranching enzyme, glucanotransferase
   3.9e-122  407.9   0.0   5.3e-122  407.5   0.0    1.2  1  GDE_C         Amylo-alpha-1,6-glucosidase
    2.8e-79  266.3   0.0      4e-79  265.8   0.0    1.2  1  hGDE_central  Central domain of human glycogen debranching en
    7.2e-22   77.3   0.0    1.5e-21   76.3   0.0    1.6  1  hGDE_N        N-terminal domain from the human glycogen debra


Domain annotation for each model (and alignments):
>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  537.0   0.0  8.8e-165    4e-161       2     440 .]     207     638 ..     206     638 .. 0.96

  Alignments for each domain:
  == domain 1  score: 537.0 bits;  conditional E-value: 8.8e-165
                   EE-TTS-EEEEE-GGGS-SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.........SSC.HHHHHHHHHHHHHH--EE CS
  hDGE_amylase   2 elpldslsiqtvlskllGpleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelf....eekdkeekeedveklvkklekeyglls 94 
                   ++pld+lsi t++sk++Gp++ W+++++e++ +gYnmiH+tPlqe+Ges+SpYSi++ql ++ ++f    +e +++ +++++e+++k +++eyglls
    CDO73299.1 207 DIPLDGLSILTLVSKWMGPITAWRDHFAETSARGYNMIHWTPLQERGESDSPYSIRNQLVYEFSMFpggkKEIGSDGGKAKIEEMLKIAREEYGLLS 303
                   69****************************************************************9998888999999****************** PP

                   EEEE--SEEETT-CCCCC-GGGS--TTT-GGGHHHHHHHCCCCTCCCHCCTSSS-SS---HCHHHHHHHHHHHHTCGGCTTGTTTS--CHHHHHHHH CS
  hDGE_amylase  95 ltDvVlnHtannskwleehPeagYnletaPhLepAleLdkallefskeleklglpteikseedlekvmealkeevleklklweyyvvdvekeveelk 191
                   ltDvVlnHtan+s+wl ehPeagY+++++PhL+pAle+d+a+lefs  l+  glpt i+se+d++k+++a++  +l++ ++w+yyv+dv++e +++k
    CDO73299.1 304 LTDVVLNHTANDSPWLLEHPEAGYSPANTPHLRPALEIDTAMLEFSAGLQVAGLPTVITSEQDVDKLVQAFD-AYLKERQIWQYYVLDVTRERKAVK 399
                   ***********************************************************************9.899999****************** PP

                   HSTTSS----SS---..-TT.SHHHHHHHHHHHS.-SSTTS--STT---B-HHHHHHHHHHHT-SS.TTT....THHHHHHHHHHHHHHHHHHHHHH CS
  hDGE_amylase 192 ealeesekkeklelkeelkeaslkeeaklvkeka.lkeakkllerfsakidlevaaallkalleeekkeeeeeeevaeklkkildelNlelykelde 287
                   +al++ +      +  ++  +++ e a++++e+  ++ +k+l +rf++++   vaa ++ka++    +  +++e+ a+++ +++d lN++ly+e+ +
    CDO73299.1 400 DALDRGDVVLW--SGPDVAYKDVAELAQIIRESGhVEGFKRLEGRFGTQVPGPVAAGFVKAAFV---NLADDNESLADAWVRVVDVLNVPLYEEWTD 491
                   ***76644433..355666668999***9999887999*************************4...34456789********************** PP

                   HHHHHHHHHHHHHHHHCS-SSS-------SSS-SS--SEEEE......E-TTSSEEEEEEEEE-TT--TTS-TTSTT--TTTTT--EEECCEEEB-- CS
  hDGE_amylase 288 dvkaileqllnrikYerldekgPklgeitkkeplverYFtrlekeestkekdkkklalannGWvwgadplkdfaskeskaYLrRevivWgDcvKLrY 384
                   d+ka+l+++ nr+kY+rld++gPklg+it + plve+YFtrl      +++d++k++lannGW+w+adpl +fa   skaYLrRevivWgDcvKLrY
    CDO73299.1 492 DTKAALDNIRNRLKYTRLDSHGPKLGPITPRLPLVEPYFTRL------QKEDPEKYSLANNGWIWNADPLSNFALWPSKAYLRREVIVWGDCVKLRY 582
                   ******************************************......88999******************************************** PP

                   -SSGGGSHHHHHHHHHHHHHHHCCSSEEEETTGGGS-HHHHHHHHHHHHHH-TT-E CS
  hDGE_amylase 385 GkkpedspfLWehmteYtellAkifeglRiDNcHStPlhvaeylLdeaRkvrpdly 440
                   G+ p+ +p+LWe+mt+Y+++lA++feg+RiDNcHStPlhv+ +lLd+aR+vrpdly
    CDO73299.1 583 GDGPSSNPWLWEYMTKYVTSLAETFEGFRIDNCHSTPLHVGVTLLDAARAVRPDLY 638
                   *******************************************************8 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.5   0.0  1.2e-125  5.3e-122       3     383 .]    1110    1584 ..    1108    1584 .. 0.95

  Alignments for each domain:
  == domain 1  score: 407.5 bits;  conditional E-value: 1.2e-125
       GDE_C    3 sdqflvrrkseslkeeekgvsliAGlpwFs....d.WGRDtfIaLsGllLvtgrfeeAreilltFaktlrhGliPNlldegqealyntvdaslwlie 94  
                  s+q+ ++ ks+sl +++ ++sl+AGlp+F+    + WGRD+fI+L+Gl L+tg f  A++++l+Fa+tl+hGliPNlld+ + ++yn++d ++w+++
  CDO73299.1 1110 SIQMYGQVKSASLDPAKPTPSLAAGLPHFAtgwaRcWGRDVFISLRGLFLTTGNFAGAKAHILAFASTLKHGLIPNLLDSLRSPRYNSRDSPWWMLQ 1206
                  789999***************************978************************************************************* PP

       GDE_C   95 aiekYleyagd.aeilrriyp..........................vlqeilqkyvqGtky....................kigldeedglisage 144 
                   i++Y ++a+d  +il++  p                          ++qeilq+++ G+++                     i++d+e+g+i++g+
  CDO73299.1 1207 NIQDYSKMAPDgLSILSESVPrrfpkddswvawndslayvysstiaeIIQEILQRHADGISFrehnagpnldmqmrdegfniDIKVDWETGIIFGGN 1303
                  ***********99***887777777************************************************************************ PP

       GDE_C  145 rlnqlTWmD.......akvkgepvtPRdGkaveinaLwyaaLkileelaekalge...........akkssykelaekikesfekkF...wdeaa.. 218 
                  r n++TWmD       a++kg+p tPRdG++vei +L +++L++l el++   ++            +  +yke+++ +++sfek +   +d+++  
  CDO73299.1 1304 RHNCGTWMDkmgeserAGNKGIPGTPRDGAPVEITGLLKSTLRWLYELSKAGKFPfkgveaeidgkRRLVTYKEWNDLLQSSFEKCYyvpKDPSEdv 1400
                  **************************************************8888899******9987889*****************7775555588 PP

       GDE_C  219 ......aavakreilaDvlkssee...kdlslRpNflialslapellseekakkvlekaeeeLltplGlktLdpedpeYkgnYdgsedsrdaa.... 302 
                        ++v++r+i++Dv+ks      +d+++RpNf ia+++apel+++e+a  +l+ a++ L++plG+ktLdp d +Y+++Yd+++ds+d      
  CDO73299.1 1401 nynvnsSIVNRRGIYKDVYKSGPGrewSDYQFRPNFPIAMTVAPELFDPEHALDALKLADQVLRGPLGMKTLDPIDLQYRPYYDNANDSDDPSvakg 1497
                  8899989************987555589***************************************************************98899* PP

       GDE_C  303 ..YHqGtvWvwllgsyveallkfgeklgkskea....leevkalLeglekhleeaglgslsElfdgdaellpkgciaQAWSvaellr 383 
                    YH+G++W w+lg++++a+l+f +k+g+ k+     l++++ +L + ++h+++ ++++++El+++d+e++ ++c +QAWS ++ll+
  CDO73299.1 1498 wnYHNGPEWGWPLGYFLRAYLYFDTKVGAGKTDptetLHHLHRILLKPREHIQKDPWAGIPELTNKDGEYCGDSCNTQAWSASCLLD 1584
                  **************************998877667778899999999*************************************985 PP

>> hGDE_central  Central domain of human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.8   0.0     9e-83     4e-79       1     253 []     795    1036 ..     795    1036 .. 0.95

  Alignments for each domain:
  == domain 1  score: 265.8 bits;  conditional E-value: 9e-83
                    TTHHHHHHHHHHHHHHHTT--SEEEEEE.ETTEEEEEEEETTTSEEEEEEEE--S..S--.-.------EEECTEEEEEEEEEEEEE-S..-.-- CS
  hGDE_central    1 GIikakklLnklhkelakegfdevhvdqleediitvtRvnpkthesvvliartaFskpksskeekklkpiklsgtikevlleaslevkskkeeyk 95  
                    GI++ak+lLn lh+e+a  gf+e hv+q e+d+i+++Rv+p+t+++++li++taF  +k sk+++ ++pikl+ t+++++  a ++ +s   e++
    CDO73299.1  795 GIARAKRLLNALHTEMALGGFEEGHVHQ-ENDYIVLHRVQPSTQKGYILITHTAF--HKGSKDRGYISPIKLRSTKAKFIYGAYINFSS--YEVT 884 
                    9***************************.**************************..7888899*************************..89** PP

                    --SSEE----EEEE.E----EEEE.......ETTTEEEEE--.S---SSEEEEEEEEETT--STHHHHHCSSHHHHCTT--TTHHHHHH--BHHH CS
  hGDE_central   96 kdekfinGlpsklkeelkleevkvlkieevedeeeesvievefenfppGsvvvfetelsevdekldefakselkealsklslvdlnvvLyrceeE 190 
                    +d ++++Glp kl    ++ ev v   ++  +e+   +i v+  +fppGs+++fet+l+++d++ld+f+++++++a+++l++v+lnvvL+r+e E
    CDO73299.1  885 QDATTLHGLPGKLI---DMREVVV--PQGLDSEGPFAEIVVP-GHFPPGSIMLFETQLQGLDSSLDTFCSEGVEAAFKDLNFVELNVVLHRAEGE 973 
                    ***********999...5566666..3444445599999999.**************************************************** PP

                    HHHHCTTS--S--BTTTB--SCSSHHHHHHHHHHHHHCT-TTSHHHHHHHH-SHHHHHHHHHG CS
  hGDE_central  191 ErdaskgkdgvYdvpnygklvYaGlqGvvsvlkeiiksndlghplcenLReGdWlldYivnRL 253 
                    Erda++g+ g+Y +p++g+lvY+Gl+G+++ l++i+++ndlgh lc++LReG+W++dYi nRL
    CDO73299.1  974 ERDATGGEIGTYVIPGLGNLVYCGLEGWMHPLRHIMRYNDLGHLLCAHLREGTWAFDYIPNRL 1036
                    **************************************************************8 PP

>> hGDE_N  N-terminal domain from the human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   3.4e-25   1.5e-21       1      89 [.      95     182 ..      95     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.4e-25
                 EEEEE-TT-GGGTT-EEEE-S-SSSS---TT--EEEE----SSS-EEEEEEE-S-CEEEEEEEEE-TTSS..EEE---EEEEE---EES CS
      hGDE_N   1 lrfviegasligrkgslwtNyPeegkeFeRdkfrelklkssfekdiyidipitkaGaFafyftydeeeeleekktkgsgYfnVePrLtv 89 
                 +r++++++++++r+g ++tN+P +g +F Rdkf e kl ++f++ i+id+pi++aGaF ++++yd +   +  + + +gYfn++P L+ 
  CDO73299.1  95 VRVTLDAGTPASRNGIFKTNFPLDGGRFARDKFAERKLPTDFSSPIQIDLPISHAGAFVYWIEYDGDTPGSRVRGR-EGYFNIDPILRT 182
                 7999************************************************************998877556665.9********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 9858.76
//
Query:       CDO73300.1  [L=259]
Description: hypothetical protein BN946_scf185008.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1804.69
//
Query:       CDO73301.1  [L=307]
Description: hypothetical protein BN946_scf185008.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-64  214.1   0.1    1.1e-30  106.5   0.2    2.0  2  Uricase   Uricase


Domain annotation for each model (and alignments):
>> Uricase  Uricase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.2   6.3e-35   1.1e-30      22     131 .]      11     124 ..       7     124 .. 0.93
   2 !  105.7   0.0   1.2e-34   2.1e-30       1     131 []     138     301 ..     138     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 6.3e-35
                 ECEEEECCEEEEEESSEEECCHHH-STTT---CCHHHHHHHHHHHHH--SSHH..HHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEEE.CC...SSEEE CS
     Uricase  22 hgfvedevttllegkdrilstyfagdnsdvvasdSvkntvYkmakkhgvespe..Falllakhflekyphveevsvslpnkhwervdl.wg...tgkph 114
                 +++ve++vt l+eg d i+ +y+++dns vva+dS+kn+ Y++ak++++      Fal+l++h+++ky+h++++ +++++ +w+r+++ +g   ++kph
  CDO73301.1  11 YNIVEYNVTALVEG-D-IEVSYTEADNSVVVATDSIKNITYYLAKTSPHVLHPerFALHLGTHLVSKYAHLKKAFITIEQLRWQRIPIsQGegqEPKPH 107
                 589***********.*.*****************************99876544**********************************666765559** PP

                 EEECEEEECCCCEEEEE CS
     Uricase 115 ahafvftpsekptglie 131
                 +haf+++++ek+t+++e
  CDO73301.1 108 PHAFYRDGDEKRTVEVE 124
                 **************985 PP

  == domain 2  score: 105.7 bits;  conditional E-value: 1.2e-34
                 EEEEEEEEEEEEEEETTCBEBECEEEECCEEEEEESSEEECC.....................................................HHH- CS
     Uricase   1 vkyGkddvrvlkvrkstgsafhgfvedevttllegkdrilst.....................................................yfag 46 
                 v++G++d++vlk   +tgsaf++fv+de+ttl+e++dri+st                                                     +fa 
  CDO73301.1 138 VTSGLKDLLVLK---TTGSAFKSFVRDEYTTLIEVNDRIFSTsidlqykfaplrvpapadgegkvfdlplaaeqakgtawdgdsvataartitleVFAI 233
                 589*********...************************************************************************************ PP

                 STTT---CCHHHHHHHHHHHHH--SSHHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEEECC...SSEEEEEECEEEECCCCEEEEE CS
     Uricase  47 dnsdvvasdSvkntvYkmakkhgvespeFalllakhflekyphveevsvslpnkhwervdlwg...tgkphahafvftpsekptglie 131
                 d+     s+Sv++t+Y ma++               ++ +++h+ +vs+slpnkh+ +vd++    +++  ++a+vf+p ++p+gli+
  CDO73301.1 234 DE-----SASVQATLYSMAQR---------------IVLEHAHILSVSYSLPNKHYVPVDMKYigiDNTSPPKAEVFIPLPAPSGLIS 301
                 **.....**************...............*************************5559977899**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2058.53
//
Query:       CDO73302.1  [L=944]
Description: hypothetical protein BN946_scf185008.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-16   58.9  43.9    4.2e-05   23.5   5.9    4.6  4  zf_CCCH_4     Zinc finger domain
    1.2e-15   58.2   6.8      0.001   19.7   0.2    4.8  5  Torus         Torus domain
      1e-11   44.5  38.5    8.7e-05   22.3   6.1    4.7  4  zf-CCCH       Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    1.3e-10   40.9   0.0     0.0022   17.8   0.0    4.0  4  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    3.6e-09   36.7   3.9    3.6e-09   36.7   3.9    2.6  2  IBR           IBR domain, a half RING-finger domain
    8.1e-09   35.4   5.2    2.4e-08   33.9   5.2    1.8  1  zf-RING_UBOX  RING-type zinc-finger
    5.2e-07   29.4   2.7    5.2e-07   29.4   2.7    2.4  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    3.5e-05   23.5  38.4      0.086   12.7   2.9    4.6  4  zf-CCCH_4     CCCH-type zinc finger
    4.3e-05   23.3   4.1    4.3e-05   23.3   4.1    2.5  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    7.4e-05   23.0   5.0    7.4e-05   23.0   5.0    3.3  2  zf-RING_2     Ring finger domain
    9.5e-05   22.6  23.0      0.086   13.1   0.1    5.1  5  zf-CCCH_3     Zinc-finger containing family
     0.0001   22.1   4.6     0.0001   22.1   4.6    2.5  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00026   20.9   4.2    0.00026   20.9   4.2    2.2  1  zf-RING_5     zinc-RING finger domain
    0.00059   19.9   7.6    0.00059   19.9   7.6    2.6  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
      0.021   15.3  48.6      0.056   13.9   6.2    5.2  5  zf-CCCH_2     RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   5.9   3.5e-08   4.2e-05       1      19 []      12      30 ..      12      30 .. 0.99
   2 !   14.9   6.5   1.7e-05      0.02       1      19 []      66      84 ..      66      84 .. 0.96
   3 !   18.5   2.4   1.3e-06    0.0015       1      19 []     145     163 ..     145     163 .. 0.98
   4 !   20.3   5.5   3.5e-07   0.00042       1      19 []     208     226 ..     208     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.5e-08
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                C ++ qG+C kGd+CrF H
  CDO73302.1 12 CVYYSQGRCAKGDQCRFFH 30
                *****************99 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.7e-05
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                C f ++G C++G++C+F H
  CDO73302.1 66 CEFHKRGLCRFGEQCKFNH 84
                999999***********99 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1.3e-06
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C fflq++C+kG+ C+F H
  CDO73302.1 145 CEFFLQNRCTKGNGCPFPH 163
                 9****************99 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 3.5e-07
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck+fl G CkkG++C+F H
  CDO73302.1 208 CKYFLDGGCKKGAACPFHH 226
                 *****************99 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   8.7e-07     0.001      69      92 ..       8      31 ..       4      49 .. 0.83
   2 !   15.7   0.1   1.5e-05     0.018      67      92 ..      60      85 ..      50     102 .. 0.84
   3 !    8.2   0.0    0.0032       3.8      72      95 ..     144     167 ..     105     175 .. 0.83
   4 !   14.3   0.1   4.2e-05     0.051      66      92 ..     201     227 ..     182     237 .. 0.81
   5 ?   -2.2   0.0       5.7   6.8e+03      86      98 ..     310     322 ..     308     334 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.7e-07
                T--B-HHHHHT--SSGGG-SSB-S CS
       Torus 69 esyfClfFarGlCakGkkCeylHr 92
                +s  C+++++G CakG +C+++H 
  CDO73302.1  8 TSSTCVYYSQGRCAKGDQCRFFHP 31
                6789*******************5 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.5e-05
                STT--B-HHHHHT--SSGGG-SSB-S CS
       Torus 67 ekesyfClfFarGlCakGkkCeylHr 92
                 ++  fC f+ rGlC  G++C++ H+
  CDO73302.1 60 VTTVPFCEFHKRGLCRFGEQCKFNHS 85
                45668********************6 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0032
                 B-HHHHHT--SSGGG-SSB-S--- CS
       Torus  72 fClfFarGlCakGkkCeylHrlPt 95 
                  C fF +  C+kG+ C + H++ +
  CDO73302.1 144 PCEFFLQNRCTKGNGCPFPHTIVS 167
                 5*******************9865 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 4.2e-05
                 HSTT--B-HHHHHT--SSGGG-SSB-S CS
       Torus  66 kekesyfClfFarGlCakGkkCeylHr 92 
                 +++e+ +C +F  G C+kG+ C + H 
  CDO73302.1 201 STAEKAVCKYFLDGGCKKGAACPFHHP 227
                 456789******************995 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 5.7
                 G-SSB-S---SS- CS
       Torus  86 kCeylHrlPteed 98 
                  C  lH++P ++ 
  CDO73302.1 310 TCLILHNIPLRTT 322
                 799******8766 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.1   2.7e-05     0.033       6      27 .]      12      32 ..       9      32 .. 0.91
   2 !   22.3   6.1   7.3e-08   8.7e-05       6      27 .]      66      86 ..      64      86 .. 0.86
   3 ?    3.4   3.4     0.065        77       5      25 ..     144     163 ..     142     164 .. 0.93
   4 !   22.0   2.5   9.2e-08   0.00011       4      26 ..     206     227 ..     204     228 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                BCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH  6 CrffmrtGyCkyGdrCkFaHgq 27
                C ++++ G C  Gd+C+F H++
  CDO73302.1 12 CVYYSQ-GRCAKGDQCRFFHPP 32
                889999.*************96 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 7.3e-08
                BCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH  6 CrffmrtGyCkyGdrCkFaHgq 27
                C  f+++G C++G++CkF+H++
  CDO73302.1 66 CE-FHKRGLCRFGEQCKFNHSP 86
                77.5555*************96 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.065
                 CBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaH 25 
                 +C ff++   C  G+ C+F H
  CDO73302.1 144 PCEFFLQ-NRCTKGNGCPFPH 163
                 7******.***********76 PP

  == domain 4  score: 22.0 bits;  conditional E-value: 9.2e-08
                 HCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   4 elCrffmrtGyCkyGdrCkFaHg 26 
                 + C++f+  G Ck G++C+F+H+
  CDO73302.1 206 AVCKYFLD-GGCKKGAACPFHHP 227
                 78******.*************8 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06    0.0046       2      57 ..     313     368 ..     312     374 .. 0.91
   2 ?   -1.0   0.0       1.3   1.6e+03      54      70 .]     424     439 ..     414     439 .. 0.74
   3 ?    0.1   0.0       0.6   7.2e+02       3      18 ..     457     472 ..     455     475 .. 0.91
   4 !   17.8   0.0   1.8e-06    0.0022      13      62 ..     492     543 ..     484     549 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAle 57 
                 ++ n+p  +t+ eL +l + fGp ks+ l + ++ k++  a Ve+ ++ dA++A +
  CDO73302.1 313 ILHNIPLRTTQTELIALAEAFGPLKSVVLDPPRDPKARLSARVEYLTSADAAHAAQ 368
                 578*********************99988777899*******************87 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                 HHHHHHTTEEETTEEEE CS
       RRM_1  54 kAlealngkklggrelk 70 
                 +A ++lng+ ++gr ++
  CDO73302.1 424 EA-ARLNGMSFDGRIIR 439
                 44.45********9885 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.6
                 EESETTTSSHHHHHHH CS
       RRM_1   3 VgnLppdvteeeLkel 18 
                 +++Lp d++ e Lk++
  CDO73302.1 457 IKGLPLDASSEHLKQF 472
                 89************98 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1  13 eeLkelFskfGpiksiklvrd..etgkskgfafVeFeskedAekAlealngk 62 
                 +eL++l+   G  +s++l+r     gk+k +af +F + ++A+kA+  lng 
  CDO73302.1 492 RELRALLLRQGALESFELMRSdaGAGKPKLVAFAQFYDADAAAKAVTGLNGA 543
                 689999999***********99****************************94 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.5       1.2   1.5e+03      44      55 ..     788     799 ..     757     804 .. 0.71
   2 !   36.7   3.9     3e-12   3.6e-09      10      62 .]     864     917 ..     855     917 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
         IBR  44 CgfefCfnCkke 55 
                 Cg+ +C  C++ 
  CDO73302.1 788 CGHIYCRPCLQH 799
                 999999999865 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 3e-12
         IBR  10 ksles.dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHeglsC 62 
                 + + s  +++k+Cp++dC+++++  ++++ ++C++C  ++C  C++e+H gl+C
  CDO73302.1 864 SHIHSrPQDFKYCPTADCQTVYRAAKEETVLRCPSCVVRICAFCHVEAHDGLTC 917
                 456663566******************88899********************** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   5.2     2e-11   2.4e-08       1      26 [.     773     798 ..     773     814 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2e-11
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreClw 26 
                   CpIC+ + ++P + lpCGH++Cr+Cl+
    CDO73302.1 773 CPICFCDVENP-LaLPCGHIYCRPCLQ 798
                   ***********.768***********5 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   2.7   4.4e-10   5.2e-07       1      32 [.     773     803 ..     773     811 .. 0.92
   2 ?   -2.4   1.1       3.9   4.6e+03      38      41 .]     896     899 ..     880     915 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.4e-10
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks 32 
                 CpiC++ +++p  +l+C+H +C++C++++l s
  CDO73302.1 773 CPICFCDVENPL-ALPCGHIYCRPCLQHYLGS 803
                 ************.**************99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.9
                 -TTT CS
    zf-C3HC4  38 CPlC 41 
                 CP C
  CDO73302.1 896 CPSC 899
                 6666 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.9   7.2e-05     0.086       2      22 .]      11      31 ..      10      31 .. 0.93
   2 !   10.8   5.8   0.00028      0.34       3      21 ..      66      84 ..      64      85 .. 0.87
   3 ?    5.8   3.4      0.01        12       2      21 ..     144     163 ..     144     163 .. 0.94
   4 !   11.9   2.9   0.00012      0.15       2      22 .]     207     227 ..     206     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.2e-05
   zf-CCCH_4  2 lCpyfakGsCrfGdnCrFsHd 22
                +C y+ +G+C  Gd CrF H+
  CDO73302.1 11 TCVYYSQGRCAKGDQCRFFHP 31
                5889**************997 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00028
   zf-CCCH_4  3 CpyfakGsCrfGdnCrFsH 21
                C +  +G CrfG+ C+F H
  CDO73302.1 66 CEFHKRGLCRFGEQCKFNH 84
                666679***********99 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.01
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsH 21 
                 +C +f++++C+ G+ C F H
  CDO73302.1 144 PCEFFLQNRCTKGNGCPFPH 163
                 799*************9987 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00012
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C+yf+ G+C+ G  C F H+
  CDO73302.1 207 VCKYFLDGGCKKGAACPFHHP 227
                 8******************97 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.1   3.6e-08   4.3e-05       2      33 ..     770     800 ..     769     807 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.6e-08
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHH CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekl 33 
                 + +C+iC+   +n + lpCgH+ +C  C++++
  CDO73302.1 770 EVPCPICFCDVENPLALPCGHI-YCRPCLQHY 800
                 578*******************.******998 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   5.0   6.2e-08   7.4e-05       3      36 ..     773     803 ..     772     806 .. 0.86
   2 ?   -3.1   3.1       8.5     1e+04      39      43 ..     892     899 ..     871     913 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.2e-08
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrs 36 
                 CpIC+++++   ++l+lpCgH+++r Cl+++l s
  CDO73302.1 773 CPICFCDVE---NPLALPCGHIYCRPCLQHYLGS 803
                 ****98885...677789************9976 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.5
   zf-RING_2  39 t...CPlC 43 
                 t   CP C
  CDO73302.1 892 TvlrCPSC 899
                 24557777 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   0.00019      0.23       6      30 ..      10      34 ..       5      40 .. 0.82
   2 ?    2.9   0.3       0.1   1.2e+02       8      29 ..      66      87 ..      61      92 .. 0.81
   3 !   13.1   0.1   7.2e-05     0.086       8      27 ..     145     164 ..     140     194 .. 0.87
   4 !    8.3   0.7    0.0022       2.6       6      27 ..     206     227 ..     200     233 .. 0.87
   5 ?   -0.5   0.7       1.2   1.4e+03      43      59 ..     897     913 ..     869     937 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
   zf-CCCH_3  6 ddcyffyystctkGdscpfrheeaa 30
                  c ++    c+kGd+c f h + a
  CDO73302.1 10 STCVYYSQGRCAKGDQCRFFHPPVA 34
                5688888889**********98877 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.1
   zf-CCCH_3  8 cyffyystctkGdscpfrheea 29
                c f+    c  G++c f h+++
  CDO73302.1 66 CEFHKRGLCRFGEQCKFNHSPS 87
                6677777899999999999876 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 7.2e-05
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                 c ff    ctkG+ cpf h+
  CDO73302.1 145 CEFFLQNRCTKGNGCPFPHT 164
                 99****************97 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0022
   zf-CCCH_3   6 ddcyffyystctkGdscpfrhe 27 
                   c +f    c+kG  cpf h 
  CDO73302.1 206 AVCKYFLDGGCKKGAACPFHHP 227
                 5699999************995 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.2
   zf-CCCH_3  43 grclrevckfrhmeidk 59 
                   c+ ++c f h+e + 
  CDO73302.1 897 PSCVVRICAFCHVEAHD 913
                 46899999999998754 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   4.6   8.4e-08    0.0001       2      32 ..     773     802 ..     772     806 .. 0.93
   2 ?   -1.8   1.1       2.4   2.8e+03      22      40 .]     880     899 ..     868     899 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 8.4e-08
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLe 32 
                 CpiC+   ++p    pCgH +C+ C++ +L 
  CDO73302.1 773 CPICFCDVENP-LALPCGHIYCRPCLQHYLG 802
                 ***********.899************9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.4
  zf-C3HC4_2  22 fCqkCilrsLeekn.eCPlC 40 
                  Cq   + + ee   +CP C
  CDO73302.1 880 DCQTVYRAAKEETVlRCPSC 899
                 56665555555555799999 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   4.2   2.2e-07   0.00026       2      33 ..     773     801 ..     772     819 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.2e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll 33 
                 C++Cf+ +   e++  ++CgHi+C  Cl+++l
  CDO73302.1 773 CPICFCDV---ENPLALPCGHIYCRPCLQHYL 801
                 ********...*****************9876 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   7.6     5e-07   0.00059       1      29 [.     773     801 ..     773     808 .. 0.91
   2 ?   -2.8   4.2       6.3   7.6e+03      24      42 .]     881     899 ..     872     917 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5e-07
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslq 29 
                 CPiC    e+P  l+CGh++C  C++++ 
  CDO73302.1 773 CPICFCDVENPLALPCGHIYCRPCLQHYL 801
                 *************************9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.3
  zf-C3HC4_4  24 CisslqkepdgeqllCplC 42 
                 C + +   ++++ l+Cp C
  CDO73302.1 881 CQTVYRAAKEETVLRCPSC 899
                 6667777777777999988 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.0   5.5e-05     0.066       2      18 .]      12      31 ..      12      31 .. 0.95
   2 ?    5.4   5.3     0.023        28       2      17 ..      66      84 ..      66      84 .. 0.86
   3 ?    4.7   5.8     0.038        46       1      17 [.     144     163 ..     144     163 .. 0.95
   4 ?   13.9   6.2   4.7e-05     0.056       2      18 .]     208     227 ..     208     227 .. 0.99
   5 ?   -1.3   0.3       2.9   3.5e+03       4      13 ..     872     881 ..     871     882 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
   zf-CCCH_2  2 Crffpn..C.tnpkCpFaHP 18
                C ++    C ++++C+F HP
  CDO73302.1 12 CVYYSQgrCaKGDQCRFFHP 31
                99999999***********9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.023
   zf-CCCH_2  2 Crffpn..C.tnpkCpFaH 17
                C f     C ++++C+F+H
  CDO73302.1 66 CEFHKRglCrFGEQCKFNH 84
                77777788*********99 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 pC ff    C ++  CpF H
  CDO73302.1 144 PCEFFLQnrCtKGNGCPFPH 163
                 8*****************66 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 4.7e-05
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaHP 18 
                 C++f +  C +++ CpF HP
  CDO73302.1 208 CKYFLDggCkKGAACPFHHP 227
                 *******************9 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.9
   zf-CCCH_2   4 ffpnCtnpkC 13 
                 +f +C+ ++C
  CDO73302.1 872 DFKYCPTADC 881
                 799**99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 6019.88
//
Query:       CDO73303.1  [L=813]
Description: hypothetical protein BN946_scf185008.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-69  233.6   0.0    3.5e-69  233.1   0.0    1.2  1  Pkinase        Protein kinase domain
    8.2e-37  126.9   0.0    1.4e-36  126.1   0.0    1.3  1  Pkinase_Tyr    Protein tyrosine kinase
    7.6e-06   25.4   0.0     0.0001   21.7   0.0    2.3  3  Kinase-like    Kinase-like
     0.0079   15.2   0.1      0.013   14.4   0.1    1.3  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.043   13.2   0.0      0.082   12.3   0.0    1.4  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
       0.93    9.4  13.8       0.14   12.1   0.4    3.6  4  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.1   0.0   1.2e-72   3.5e-69       2     263 ..      27     289 ..      26     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 233.1 bits;  conditional E-value: 1.2e-72
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.............HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.............kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggelad 87 
                 ++ +++G+Gs+G+V  a++++tg+  AvK+++k    ++++             +++ rEi i+k ++hpni+rly+v+e+++elyl+leyveggel+d
  CDO73303.1  27 KVGRTIGKGSSGRVRLARHTKTGQYAAVKIVSKTALLNSRTslyslgeeaerilHSIEREIVIMKLIDHPNIMRLYDVWETSTELYLILEYVEGGELFD 125
                 67899****************************998877777889999999999999****************************************** PP

                 HHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHH CS
     Pkinase  88 llerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGv 185
                 +l +kg l  +ea  +++qi+++++y+H+ +i HrDlKpeN+L+d++ ++K++DFG+a    +++ l++ +g+++Y APEv+ ++ y ++++D+Ws+Gv
  CDO73303.1 126 YLCNKGRLVAKEALCYFQQIITAIDYCHRFNIAHRDLKPENLLLDRDHNIKVADFGMAVWQGKGNMLQTACGSPHYAAPEVIMGQAYdGTASDIWSCGV 224
                 *****************************************************************9****************999999*********** PP

                 HHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 186 ilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                 ily ll+g+ pf     +e+  + l++    +k+      k+  +s+i++ a+dl++++++kd +kR+t+ e+l+hp+
  CDO73303.1 225 ILYALLAGRLPFD----DEDLPTLLEK----VKV-----GKFTMPSDIDPRAQDLIRRMITKDVRKRITIPEILRHPF 289
                 *************....3322223333....333.....478999*******************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   4.8e-40   1.4e-36       3     257 ..      28     286 ..      26     287 .. 0.86

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 4.8e-40
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..ST........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl..ke........eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlk 90 
                  +g+++G+G+ G+V  ++ +++ + + vk++ Kt   ++        e  e+  +++ +e+ imk ++hpni++l+ v   + +l++++eyv+gG+L +
   CDO73303.1  28 VGRTIGKGSSGRVRLARHTKTGQYAAVKIVSKTAllNSrtslyslgEEAERILHSIEREIVIMKLIDHPNIMRLYDVWETSTELYLILEYVEGGELFD 125
                  7899**************9777777777777765322223333222222223677888**************************************** PP

                  HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHH CS
  Pkinase_Tyr  91 fLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksD 187
                  +L +k   +l  k+ l++ +q+  +++y ++ ++ Hrdl   N Ll++++ +k++DfG+a       + ++ ++a  + ++ apE+++ + +  ++sD
   CDO73303.1 126 YLCNK--GRLVAKEALCYFQQIITAIDYCHRFNIAHRDLKPENLLLDRDHNIKVADFGMAVWQ---GKGNMLQTACGSPHYAAPEVIMGQAYDgTASD 218
                  ***98..99***************************************************987...33344455566779***********97589** PP

                  HHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +Ws Gv+l+ ++  g+ p+ + +  ++lek+k gk  ++p+++ ++ ++l+++  ++d ++R t+ e+++
   CDO73303.1 219 IWSCGVILYALLA-GRLPFDDEDLPTLLEKVKVGK-FTMPSDIDPRAQDLIRRMITKDVRKRITIPEILR 286
                  ************9.*****************9885.788999**********************999865 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.089   2.6e+02      15      61 ..      27      74 ..      24      83 .. 0.85
   2 !   21.7   0.0   3.4e-08    0.0001     152     288 .]     144     278 ..     126     278 .. 0.83
   3 ?   -3.9   0.0       2.2   6.7e+03      72      95 ..     552     575 ..     547     578 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.089
  Kinase-like 15 vrgellkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlke 61
                 ++g  ++kg ++ v +++  +tg++ avk+ + ++  +s+  l  l e
   CDO73303.1 27 KVGRTIGKGSSGRVRLARHTKTGQYAAVKIVSKTAlLNSRTSLYSLGE 74
                 5788999**********************9998887888888776655 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 3.4e-08
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclk 247
                  q+i  + + +   + h +++++nllld++  +++ +f+  v +g+   l + +    +a pE++  +        +    + d W  G+  y + +  
   CDO73303.1 144 QIITAIDYCHRFNIAHRDLKPENLLLDRDHNIKVADFGMAVWQGKGNMLQTACgsPHYAAPEVIMGQ--------AYDGTASDIWSCGVILYALLAGR 233
                  778888999999*****************************99999998777766789999998773........3334578**************** PP

  Kinase-like 248 lPltl.ateeakeew...kfklckkipekvkaLlkkfLqlsqedR 288
                  lP++  + +   e+    kf     i    + L+++++  ++++R
   CDO73303.1 234 LPFDDeDLPTLLEKVkvgKFTMPSDIDPRAQDLIRRMITKDVRKR 278
                  ***751556666665556788888888889999999999999998 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.2
  Kinase-like  72 knpeqAkdhlrlllpfdlvkiqkk 95 
                  + ++q ++   l  pfd+v++++ 
   CDO73303.1 552 QIQRQRERDDTLTDPFDIVEVPRE 575
                  66777777888999******9976 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   4.4e-06     0.013     179     255 ..     106     184 ..      25     195 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.4e-06
  Haspin_kinase 179 yseqqlflvlllkdkGtdLeev..klk.swkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                    +++++l+l+l+  ++G+  + +  k +   k+al  f qi++ +     +f+  HRdL+ +n L+d+ +n+ + d+ ++ 
     CDO73303.1 106 ETSTELYLILEYVEGGELFDYLcnKGRlVAKEALCYFQQIITAIDYC-HRFNIAHRDLKPENLLLDRDHNIKVADFGMAV 184
                    45677777777777777666653322213466777777777777665.79*************************98875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05     0.082     123     166 ..     141     180 ..     109     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  ++++ ++i   hr ++ H+dl + n+ll+ ++    +i + D+
  CDO73303.1 141 YFQQIITAIDYCHRFNIAHRDLKPENLLLDRDH----NIKVADF 180
                 5799999***********************998....5555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   4.6e-05      0.14     168     198 ..     157     185 ..     152     186 .. 0.81
   2 ?    2.2   1.4     0.049   1.5e+02     116     166 ..     359     409 ..     326     418 .. 0.70
   3 ?   -3.9   0.1       3.5     1e+04      92     130 ..     500     534 ..     485     560 .. 0.54
   4 ?    2.3   0.0     0.045   1.4e+02      53     104 ..     660     706 ..     648     789 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.6e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedagl 198
                 + H+Dl+p Nll+d d++    v Df++a++
  CDO73303.1 157 IAHRDLKPENLLLDRDHNI--KVADFGMAVW 185
                 67************33333..49*****998 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.049
                 -SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-E CS
         APH 116 adflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpgelpt 166
                 ++++++  + ++ +e+++a+++a + +  +++++ e v +ala+l p+++p+
  CDO73303.1 359 QYRAKHLENYDEEEERQAAARRAKKHKSkRAADAIE-VQQALADLPPRAGPP 409
                 455555444555555555577777777787888888.999999999985555 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHH CS
         APH  92 pellealgeflaalhqvdpaalpladflaqdlellrqle 130
                 +++l+++++ laa+++    + p++d++  + e+++ l+
  CDO73303.1 500 QQFLQQIVQHLAAMQSG---NTPVRDRS-NYDEVFAPLN 534
                 44555556666666666...23333333.3344444444 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.045
                 B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCC CS
         APH  53 pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaa 104
                 ++P+  +++     ++++f l++ +++++ ++       ++lle++g + aa
  CDO73303.1 660 STPKRRWFGALFRIRPTRFSLLSTQDAAHTHT-----TCRRLLEDMGVTVAA 706
                 7899999999999*******************.....9*********99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.51
# Mc/sec: 4835.44
//
Query:       CDO73304.1  [L=188]
Description: hypothetical protein BN946_scf185008.g66 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-30  105.6  17.6      2e-23   82.9   2.7    2.8  3  Tma16         Translation machinery-associated protein 16
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.054   13.5   0.1    1.9  1  Sigma70_r1_2  Sigma-70 factor, region 1.2
        3.9    7.6  13.6       0.85    9.8   9.1    1.9  2  DUF2058       Uncharacterized protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> Tma16  Translation machinery-associated protein 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   2.7   2.2e-11   1.3e-07       1      37 [.      12      48 ..      12      51 .. 0.93
   2 !   82.9   2.7   3.3e-27     2e-23      71     145 ..      51     126 ..      50     127 .. 0.96
   3 ?   -0.4   0.2      0.15   9.2e+02      91     106 ..     144     159 ..     135     167 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.2e-11
       Tma16  1 kkkalHpkSRkakqLaraalRdeklakkkkerakkks 37
                k+k++Hp+SRka qL r +lR++kla+++ker+kk+ 
  CDO73304.1 12 KEKVFHPNSRKAGQLVRTQLRKSKLAEQAKERSKKQG 48
                689******************************9985 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 3.3e-27
       Tma16  71 kRndeeleelkserrkgrpkskreelleekkereeeeyetGfevpDLtdeenvkllreW.ngdlsslstlkfiris 145
                 +R+d+elee+k++rrkgrpks +e +lee+k re e y+tG+ev DLt++ nv+l+r+W +++++++++l+firis
  CDO73304.1  51 ARHDQELEEEKAARRKGRPKSMKEMKLEEQKLRELELYRTGMEVLDLTHPTNVELFRKWdQKEAAYIQQLRFIRIS 126
                 59*********************************************************5559************8 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.15
       Tma16  91 skreelleekkereee 106
                  kree l+++ ++ee+
  CDO73304.1 144 LKREEELKKQANAEEQ 159
                 5677777777776665 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     9e-06     0.054       9      22 ..     137     150 ..     136     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9e-06
                   HHHHSX--THHHHH CS
  Sigma70_r1_2   9 EIGriPLLtaeEEv 22 
                    IG++PLL +eEE 
    CDO73304.1 137 RIGHHPLLKREEEL 150
                   6************6 PP

>> DUF2058  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.1   0.00014      0.85       5      79 ..      25      99 ..      22     123 .. 0.85
   2 ?   -0.0   0.1      0.14   8.6e+02      52      70 ..     145     163 ..     128     169 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00014
     DUF2058  5 QLlkaGLvdkkkakkakkekrkqkkqkkkgaadeakeaaeeakaekaerdrelneqrkeeaekkalkaqirqlie 79
                QL++  L ++k a++ak+ ++kq  q+++ ++ e+++aa+++ + k  ++ +l+eq+ +e e   +  ++ +l +
  CDO73304.1 25 QLVRTQLRKSKLAEQAKERSKKQGTQARHDQELEEEKAARRKGRPKSMKEMKLEEQKLRELELYRTGMEVLDLTH 99
                899999999999999999999999999998888999999*****************9999887777777766665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.14
     DUF2058  52 erdrelneqrkeeaekkal 70 
                 +r+ el +q ++e++++a+
  CDO73304.1 145 KREEELKKQANAEEQAQAM 163
                 4555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1790  (0.0998383); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1320.10
//
Query:       CDO73305.1  [L=653]
Description: hypothetical protein BN946_scf185008.g67 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4506.17
//
Query:       CDO73306.1  [L=987]
Description: hypothetical protein BN946_scf185008.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-108  364.1  59.1    8.6e-87  292.3  33.8    3.0  2  PAT1          Topoisomerase II-associated protein PAT1
  ------ inclusion threshold ------
       0.61    9.8   2.6        2.3    7.9   0.4    2.2  2  Pertussis_S1  Pertussis toxin, subunit 1


Domain annotation for each model (and alignments):
>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9  29.1   1.7e-23   1.5e-19       1     338 [.       1     314 [.       1     323 [. 0.57
   2 !  292.3  33.8   9.6e-91   8.6e-87     214     854 ..     296     981 ..     292     983 .. 0.71

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.7e-23
        PAT1   1 msFfgfdttlprdahntaapGfsqahdpfaglskaeeedddaldF.edtYdgLgdqLdetdDafNddTFggegggdevsakkvgkdfDffgqTa.kvad 97 
                 msFfgf++ +  d +n +++ f +      gls+a+++d  ++ + ed YdgLgd L+e +D++Nd+TFg         +++vgkdfDf+g+   +  +
  CDO73306.1   1 MSFFGFEQQT--DLEN-EKRKFLE-----GGLSGASQDDVAVFTWgEDSYDGLGDALQEGGDELNDETFG--------ISGPVGKDFDFSGTSLpEHEK 83 
                 9******998..5444.4444554.....478887777544444479**********************6........4689*********98614555 PP

        PAT1  98 aieeEqlrfsrqqpaaka.sekaaaaelkevkkasqaseqksk.pvrtgyekykepepipdlqvdaslWgvaekkaaasaaapevaaaaaslasasrkv 194
                     E+++ s+ +++ ++ s++a+++++++   + ++++  s  p ++g   ++ ++ + d   ++sl   ++++++++++ p+  +  a   +  + v
  CDO73306.1  84 PAPSEHAQASQASQQVQQsSQSAQRTHASHLDAVWSNKSPFSVlPRSSG--PFRTHDHLGDSASKSSLLAPGTSQSTSAHK-PASLSLGA---DLHQGV 176
                 6777887666544443331333333333333333333333233366666..577789***********9777776665533.44444443...45679* PP

        PAT1 195 lsleEvEaamraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaep.s 292
                  +leE+E +m a a ++++q+ ++ +++++ +  + +qa+++   + + q qq+  +++++q++   +   q+ ++++ p++++  pq+++a+p+ + +
  CDO73306.1 177 HTLEEIEREMLAAAAAQHQQQLQQRQREEEEQ-LRLQQAQQQL--E-QLQLQQQLLHQQQSQAQMPAHGLLQSPSRTHAPPRQVPGPQHAAATPPPRmH 271
                 **********9999988888776666554333.2222222222..2.2223333333333333333333444444556678888888777655544303 PP

        PAT1 293 asseaqeakqqappakvqptqilqnpnrlaarlelsqkeqaaaqaa 338
                 ++s++ +++qq+++   + +++lq  +++++r  l+ +eq ++q++
  CDO73306.1 272 PHSQSPRFHQQQQQ---HQIHLLQMQQQQQQRQLLELQEQRERQQQ 314
                 33444445555553...44555655555533432222222222222 PP

  == domain 2  score: 292.3 bits;  conditional E-value: 9.6e-91
        PAT1 214 qaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappakvqpt 312
                 q+++++  + q +  + +q+++  + +++   ++++ ++  qq++ +q++ +   +e  ++  i+qr +s   +pa  s   +  +++  ++p  +  +
  CDO73306.1 296 QQQQRQLLELQEQ-RERQQQRQLLELQEQLRLEEMERQQ--QQHRLQQQQMNAGVNELMQSHLIHQRLNSGGLSPAFDSRARRVGRQSPLMTPPIQVDV 391
                 1111111111111.1111111111111111112222222..1222222222222223334555667777766665555444443322222222222222 PP

        PAT1 313 qilqnpnrlaarlelsqkeqaaaqa......apeqeakrqqssagkqaqiithpqqlaqlseeekaayLeeeakrakRnhkifllskdnGlmTpqDKnF 405
                    qn + l+++++++q+  a++++       ++    ++++  +++ q i + + + ++ e e++     e kr +R  ki  +s+ n lmT +DK+F
  CDO73306.1 392 PFAQNMQYLPQNIQMQQRLLAEMAQaeflntLQSAGLPERETRESREVQEILRVEAMRKIMEAERM-----EEKRKRRLDKIAHMSRYNDLMTQSDKDF 485
                 233444444444433333333222200000022222333333344455666666667777777664.....678889********************** PP

        PAT1 406 itRiqlqqLvsAtGnpadqgsdeslseDFYYqVysqirggqrqnpeqplsnFaqTYLfqtgsRqggar..rrergaenhvqrmeqqvqraVeaAKnkPK 502
                 itRiq++qLv+          ++  ++DFY qVy  i  ++   p+ +         f +g+  g     +   + +  +qrme qv r V+ A+ + K
  CDO73306.1 486 ITRIQVSQLVT----------QDPYADDFYAQVYGAILRSRMGLPTSEDRV----LKFGSGGGVGLGLgqKVPGRRQSAMQRMEAQVERIVNNARLREK 570
                 **********9..........7899**********9987666666655443....345566655544411444556789***************99999 PP

        PAT1 503 nkqLv..ieGsLGKisfsnak.tPkpLLnikrteseeda................................krpssakkkaksseas..........ld 556
                  k     ++G+LG+ +    k +P++LL +  ++ +++                                  r  +a +++     +          l+
  CDO73306.1 571 EKSSLnnLQGALGRTAGRSYKaAPRQLLQVDSNNVSTSPavshasaahisksdaaraqeegegaareaakiGR--EALRNT-----AdstglvhrdpLT 662
                 88643249******997666537*******9996665555677788899999999998888887654432211..111111.....1223455677789 PP

        PAT1 557 rksiLrniEkvYstlmkledheRkmppplaeesdaeleekhkeWkeklqelneklWeeLkvhepigattvhPFiallsfpKGkkaipRifrhlskeqrv 655
                 +++ L ++E++Y+++++le+++R  p        +e++e +++W+++ ++l ++l+++L v  p++ +t+hPFi+l++  KGkk++pR+ r l++++  
  CDO73306.1 663 HREALVKLEQLYDLVLDLEQRRRDQPN-------PEDIEDFEQWTQECSTLIDQLFDQLLVSVPLEISTPHPFISLITPIKGKKLLPRVARLLDNDRMQ 754
                 9**********************9998.......56789999******************************************************999 PP

        PAT1 656 tiLtmivvhlDqLdvvrkaqv..tsgetqlnaavreeielFsqavmpsLlaylneldldivtgllgliltklnvdliaktriGlslLTlllsRaellkq 752
                  +Lt++v  + qLdvv +a +  t +et+  ++++++ ++F   v++s+l ++  +++ +vtgl+gl+l++ ++ +ia+tr G++lLTl+lsRae++ q
  CDO73306.1 755 ILLTLLVACFSQLDVVIQAPMldTLEETREIKDLESQTQAFLGSVVQSILPVIAKAQMRLVTGLFGLLLDRNDIVAIARTRPGIALLTLFLSRAEVILQ 853
                 9******************996666788888999*************************************************************9988 PP

        PAT1 753 sgags........eeeweeweetynklFdrleptlpeiFP............gsvnsge..dvyvWqlLAalgigAspdqqqrLVlavkdRVldtvals 829
                 + a          ++e+++w+++yn+lF+ l p+lp +FP            +s+ +++  d  vWq+ A+l+ +A+  qqq LV + +d Vl++v+++
  CDO73306.1 854 NVANGsevdeaptPDELQSWNMLYNHLFELLRPHLPLLFPsvrlsmlsgvnfTSIPNSDviDQPVWQFFASLACSANDTQQQVLVGGLRDVVLENVTTA 952
                 6543224555555889*******************************98888777665434788********************************998 PP

        PAT1 830 kt.l...PedlaaqRlanVNLFmraiGLD 854
                  + +    e+  + RlanVNLF++a+GLD
  CDO73306.1 953 TKgMgleSEERRRLRLANVNLFLHALGLD 981
                 542422235566779*************9 PP

>> Pertussis_S1  Pertussis toxin, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.031   2.8e+02      51     102 ..     432     483 ..     418     489 .. 0.87
   2 ?    7.9   0.4   0.00026       2.3     179     221 ..     593     635 ..     580     640 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.031
                   CCCCGHHHCCCCHCCHCCCCCCCCCCTTS-SCEEECCCCCCHHCCCCCCCHC CS
  Pertussis_S1  51 airssrrylevvlehrrrealeeiradrgtghfinaiaeveadldlyraasv 102
                    +r sr   e++    +r+ +e++r ++     ++ ia+    +dl+ + + 
    CDO73306.1 432 ETRESREVQEILRVEAMRKIMEAERMEEKRKRRLDKIAHMSRYNDLMTQSDK 483
                   578899999999999************9999****************99875 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00026
                   TT---SS--SBECETTTTCCCCCCCCCE--SEEEEEE-STT-E CS
  Pertussis_S1 179 srrsvlsivatdvrmlPviGiatavqleiseaaavadvreGea 221
                   + r+ l++ +++v   P +  a a +++ s+aa + ++ eG a
    CDO73306.1 593 APRQLLQVDSNNVSTSPAVSHASAAHISKSDAARAQEEGEGAA 635
                   56899*********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3106  (0.173239); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.25u 0.34s 00:00:01.59 Elapsed: 00:00:00.51
# Mc/sec: 5834.19
//
Query:       CDO73307.1  [L=974]
Description: hypothetical protein BN946_scf185008.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-51  173.0   0.0    9.9e-51  172.3   0.0    1.4  1  DNA_ligase_A_M  ATP dependent DNA ligase domain
    1.2e-35  123.4   0.0    2.6e-35  122.3   0.0    1.5  1  DNA_ligase_A_N  DNA ligase N terminus
    8.5e-22   77.4   0.0    2.3e-10   40.7   0.0    2.9  2  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
    1.7e-15   57.4   0.1    2.9e-14   53.5   0.0    2.7  2  DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
    1.3e-11   45.1   0.0    2.8e-11   44.0   0.0    1.6  1  RNA_ligase      RNA ligase
      5e-08   33.2   0.2     0.0035   17.7   0.0    3.3  3  BRCT            BRCA1 C Terminus (BRCT) domain
      0.002   18.4   0.1      0.064   13.6   0.0    2.6  2  LIG3_BRCT       DNA ligase 3 BRCT domain
  ------ inclusion threshold ------
      0.065   13.2   0.0        3.7    7.6   0.0    2.6  2  PTCB-BRCT       twin BRCT domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0   4.4e-54   9.9e-51       1     204 []     202     409 ..     202     409 .. 0.97

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 4.4e-54
                     -EEEEEES.CHHHHHHHTTTSEEEEEEEESSEEEEEEEETTEEEEEETTS-B-GG......GCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTT CS
  DNA_ligase_A_M   1 pmLAeslk.siekalkkleekafivEiKyDGeRaqvhkegdkvklfSRrlkdita......akpelvkalkeafkkdeksvilDGElvavdketg 88 
                     pmL+++ + ++e+ +k++++++fi+E+K+DGeR+q+hk g+++ + SR++kd+t+        ++l+  +++af++++ ++ilDGE++++d+ ++
      CDO73307.1 202 PMLCKRPTkKLEDSIKEMQGRTFIIEEKLDGERMQLHKRGNEYFYCSRKGKDYTYlygkhvGTGSLTPYIDAAFDPRVDEIILDGEMLVWDPISE 296
                     9***99777**********************************************9999888899****************************** PP

                     CBEHHHHHCHHH.HCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEE CS
  DNA_ligase_A_M  89 eilpfqklasrk.kkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGl 182
                     + lpf++l++ + +++k   e+  + ++c+ vFD+Lyl+g+sl++++lk R++ L++ l+e ++r+e++ + e+++++++++ ++e i+++ EGl
      CDO73307.1 297 RNLPFGTLKTAAiDRSK--TEL--SPRPCFKVFDLLYLNGMSLLHKSLKFRKRNLRSCLTEVPGRIEFLIEFEGRTAKDVRQRMDEIIANRGEGL 387
                     ***********988887..455..689******************************************************************** PP

                     EEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 183 vvKnpdskYepgkrsknwlKvK 204
                     ++K pds Y    r+k+w+KvK
      CDO73307.1 388 ILKHPDSEYVLNGRNKDWIKVK 409
                     *********************9 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   1.1e-38   2.6e-35      40     173 .]      16     160 ..       5     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 1.1e-38
                     HHHHHHHHSS-CCC.S-.-----HHHHHHHHHHHHT--HHHHHHH............HHHHS-HHHHHHHHHCCHHHH------BHHHHHHHHHH CS
  DNA_ligase_A_N  40 dlypalrLllPdyd.gr.eygigesllakalaealglskkkikda............lakvgDlgevaeevlskrstlakkspltieevnelLdk 120
                     dl+p+lrL+lP++d +r +yg++e+ laka++++  l +    da            +++ gD+ +v++ev++krs+   ++++t++evn+ Ld+
      CDO73307.1  16 DLFPVLRLILPQKDrERaVYGLKEKNLAKAYIKLIPLGRH-DPDAirllnwkkpterDRSSGDFPTVLYEVVNKRSS-VVEGSMTVDEVNDVLDE 108
                     8********************************9999966.45557889999999887779**************99.999************** PP

                     HHH-.STTHHHHHHHHHHHHHHHS-HHHHHHHHHHHCT---SS--HHHHHHHHH CS
  DNA_ligase_A_N 121 laaa.gkgsedekkkilkkllkraspeEakyliriilkdlriglsektvldala 173
                     la++ g  + d++++il++l++r++peE+k+++riilkdl i ++e+tv+ +++
      CDO73307.1 109 LAQNmG--KSDAQSRILQRLYNRSTPEEQKWIVRIILKDLIISVKENTVFGVFH 160
                     *98755..59*****************************************998 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.9e-11   4.2e-08       2      83 ..     606     700 ..     605     702 .. 0.84
   2 !   40.7   0.0     1e-13   2.3e-10       2      82 ..     852     956 ..     851     959 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.9e-11
      BRCT_2   2 sklFeglrFYin...daeps.psreklkklIeknGGev.vetitsavyiviaesneee........laekrkrrvvspkyIkdCikkgkllplen 83 
                  +lFeg++F +    +++ + ++++ l ++I ++GG+  +   ++   iv++  +++          + k   ++++p++I dC++kg+++pl +
  CDO73307.1 606 DNLFEGYKFVVYsdpKSRTGvEDKKALLQMIHAHGGKYfQIARNDPSLIVVYGGQTTLgpaydiklIMNKGVCDIIRPQWIIDCVAKGEIVPLTK 700
                 58*********8889888888***************9844444555777777777666999*999877777789******************986 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 1e-13
      BRCT_2   2 sklFeglrFYin................daepspsreklkklIeknGGevvetitsavyiviaesneee........laekrkrrvvspkyIkdCikkg 76 
                 +++F++lrFY+                 +a  ++  ++++klI++nGG+vv+  +++ ++v+  + + +        +++ ++r+ v  ++++ C+++g
  CDO73307.1 852 EHIFKHLRFYLDtptnarkhgmsvntkrEADIEHRLSEVAKLITDNGGRVVDLDDPKLTHVVLDKRDISrrkeliarTSQPKRRQLVVSDWVDVCLEEG 950
                 589********55555667777887886556669999********************9999999999999*******9********************* PP

      BRCT_2  77 kllple 82 
                 +ll+ e
  CDO73307.1 951 TLLNEE 956
                 ***987 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.3e-17   2.9e-14       1      98 [.     434     546 ..     434     547 .. 0.88
   2 ?    0.4   0.1      0.43   9.7e+02      26      50 ..     809     833 ..     807     851 .. 0.75

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.3e-17
                     GGGSEEEEEEEEEETTE........EEEEEEE-SS--HHHHHHHHHHH.GGGEECTTCE..SS---HHHHTTEEE-TT-EE..EEEESEEECTSS CS
  DNA_ligase_A_C   1 rgglvgslllgvyddgk........leyvgkvgtGfsdaeleelrkkl.kelerkkppf..aekvpeeekrdvWvePelvv..eVkfaeitasgk 82 
                     r+g+v+sl+++v dd++        +++++++g+G+s a++ ++r+k  k++ + +p++   +++ +++k dv++ePe ++  +Vk+aeit s+ 
      CDO73307.1 434 RSGGVSSLICAVLDDRRpnadeepkYSTFVRIGSGLSYADYIWIRQKPwKPWGNGPPSWlqVARKGQDDKGDVYLEPEHSFilKVKAAEITSSEG 528
                     5799**********44445555677**********************9679999999998766666666777******99999************ PP

                     STT..EECT-EEEEE-TT CS
  DNA_ligase_A_C  83 yka..slRfPrfkrlReD 98 
                     y+   ++RfPr +++R+D
      CDO73307.1 529 YHFgfTMRFPRALQIRDD 546
                     *****************9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.43
                     SS--HHHHHHHHHHHGGGEECTTCE CS
  DNA_ligase_A_C  26 tGfsdaeleelrkklkelerkkppf 50 
                      Gf+d+++e++ ++ +  e++k++ 
      CDO73307.1 809 VGFDDDDWEQISESAETSEKAKSKG 833
                     69*************9666666654 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.2e-14   2.8e-11       2     161 .]     223     409 ..     222     409 .. 0.68

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.2e-14
                 EEEEEEE-SSEEEEEEEETT.EEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH....ECCEEEEEEEES..SS..TTSS.................. CS
  RNA_ligase   2 evvvtEKlDGtnfriylvke.vgvasRsqilpfgeekfkefkrwaaalrkklkekla..neelilyGElig.hsikygglpk................. 79 
                 +++++EKlDG+++++++  + + ++sR++     ++ +  ++     l+ ++ + ++  + e+il GE++  ++i+ ++lp                  
  CDO73307.1 223 TFIIEEKLDGERMQLHKRGNeYFYCSRKGKD---YTYLYGKHVGTGSLTPYIDAAFDprVDEIILDGEMLVwDPISERNLPFgtlktaaidrsktelsp 318
                 79***************94459999998877...2222222333333333555555589889*********8666444433344555667777778888 PP

                 ..EEEEEEEEEEE.CTTBECE--HHHH..HHHHHCCT.B..EEEEE.SSHHHHHCCC...HHHHTC--EEEEEESSSSBE.TTE.BSEEEEE CS
  RNA_ligase  80 ..efyvFdifdir.dkeeqrylspdev..ealakglg.tvpvlyegkflaaeellel..llskgnkrEGlVikpeselyk.nkg.raifKvk 161
                    f vFd++ ++     ++ l+++++  + +++++   + +l e++  +a+++++   +    n++EGl++k++++ y  n + ++++Kvk
  CDO73307.1 319 rpCFKVFDLLYLNgMSLLHKSLKFRKRnlRSCLTEVPgRIEFLIEFEGRTAKDVRQRmdE-IIANRGEGLILKHPDSEYVlNGRnKDWIKVK 409
                 889999999998864445555555555335666655465555555544455555555441.4578*****************99******98 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.8   8.6e+03      22      37 ..     209     235 ..     205     250 .. 0.66
   2 !   17.7   0.0   1.5e-06    0.0035       3      79 .]     606     690 ..     604     690 .. 0.82
   3 !   11.9   0.0    0.0001      0.23      23      53 ..     888     919 ..     852     940 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.8
                 HHHHHHHHHHTTCEE...........E CS
        BRCT  22 rdeleelikehGGkv...........t 37 
                 +++le+ ike+ G+            +
  CDO73307.1 209 TKKLEDSIKEMQGRTfiieekldgerM 235
                 578899999998886555555544444 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.5e-06
                 TTTTTTEEEEE....EESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSS..HSHHHH......HHHHHHTTSEEEETHHHHHHH CS
        BRCT   3 ellfhgckfvi....tgvldnftrdeleelikehGGkvttevskktthlvvgep..esrslk......ylealklnipivheewlldci 79 
                  +lf+g kfv+    +++   ++++ l ++i  hGGk+ +   ++ +++vv     +           +l  +k    i++++w+ dc+
  CDO73307.1 606 DNLFEGYKFVVysdpKSRTGVEDKKALLQMIHAHGGKYFQIARNDPSLIVVYGGqtT----LgpaydiKLIMNKGVCDIIRPQWIIDCV 690
                 589***********9999999999999***********9999999999997555322....13445667777888889**********5 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.0001
                 HHHHHHHHHTTCEEESSCSTTSSEEEESSS.H CS
        BRCT  23 deleelikehGGkvttevskktthlvvgep.e 53 
                 +e  +li ++GG+v++  ++k th+v ++  +
  CDO73307.1 888 SEVAKLITDNGGRVVDLDDPKLTHVVLDKRdI 919
                 56689**********************99842 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.12   2.6e+02      63      79 ..     677     693 ..     606     695 .. 0.67
   2 !   13.6   0.0   2.9e-05     0.064      21      80 ..     888     951 ..     877     952 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.12
   LIG3_BRCT  63 nakaVtaewiwesIkkr 79 
                     + ++wi ++++k+
  CDO73307.1 677 VCDIIRPQWIIDCVAKG 693
                 45567899*****9986 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.9e-05
   LIG3_BRCT  21 kklrRYfiAydGdlvkeekekeaTHvvvskke.....eskkekeksknakaVtaewiwesIkkrt 80 
                 + + + ++ ++G +v+  +  + THvv +k++     e  +++++ k+ + V+++w++ + +++t
  CDO73307.1 888 SEVAKLITDNGGRVVD-LDDPKLTHVVLDKRDisrrkELIARTSQPKRRQLVVSDWVDVCLEEGT 951
                 4556668889999999.666789******988887766667788899999**********98875 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.064   1.4e+02      11      27 ..     627     643 ..     621     660 .. 0.84
   2 ?    7.6   0.0    0.0016       3.7      13      41 ..     887     915 ..     875     921 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.064
                 TCHHHHHHHHHHTT-EE CS
   PTCB-BRCT  11 ddrkslqklieamGaey 27 
                 +d+k l ++i+a+G++y
  CDO73307.1 627 EDKKALLQMIHAHGGKY 643
                 4688999*********9 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHTT-EEESSEETT-SEEEEC CS
   PTCB-BRCT  13 rkslqklieamGaeyskdltksvTHLick 41 
                 ++++ kli+++G+ +++    ++TH++  
  CDO73307.1 887 LSEVAKLITDNGGRVVDLDDPKLTHVVLD 915
                 7899************999*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 6844.13
//
Query:       CDO73308.1  [L=629]
Description: hypothetical protein BN946_scf185008.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-24   85.4   0.0      4e-24   84.7   0.0    1.4  1  Forkhead  Forkhead domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   2.2e-28     4e-24       2      79 ..      25     100 ..      24     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.2e-28
                 -----HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-TTSS--EEE-- CS
    Forkhead   2 kPpysYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreeeegkgslwtid 79 
                 kP++sYaa+I qAi++sp + l L++Iye+i++ +pyy++  + +W nS+rh+Ls   +F+kv+r+++egk slw+i 
  CDO73308.1  25 KPELSYAAIIGQAILASPGHALALQDIYEYITTVYPYYKRG-EPTWMNSVRHALSTMAVFRKVQRDRSEGK-SLWAIW 100
                 9***************************************5.9**********************776555.678875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4669.87
//
Query:       CDO73309.1  [L=840]
Description: hypothetical protein BN946_scf185008.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-143  479.0   6.2   1.9e-143  478.8   6.2    1.0  1  Adaptin_N        Adaptin N terminal region
    6.8e-25   87.5   0.0    1.7e-24   86.3   0.0    1.7  1  Alpha_adaptinC2  Adaptin C-terminal domain
    1.1e-08   35.2   5.0    8.5e-07   29.1   0.1    3.6  3  Cnd1             non-SMC mitotic condensation complex subunit
      0.004   17.5   3.1        1.6    9.2   0.2    4.5  4  HEAT_2           HEAT repeats
  ------ inclusion threshold ------
      0.028   14.7   1.8      1e+02    3.6   0.0    4.8  5  HEAT             HEAT repeat


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.8   6.2  5.4e-147  1.9e-143       2     523 ..      23     576 ..      22     577 .. 0.97

  Alignments for each domain:
  == domain 1  score: 478.8 bits;  conditional E-value: 5.4e-147
                 HHHCCHHHHHHCCSSS.-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHH CS
   Adaptin_N   2 ekriqqelaeilnsnk.dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglA 99 
                 ++ i+qe+a+i+ s++ +d+  ++++v+kl+y+++lG +++f+++e++klvas +f +Krl+Yl ++ll++es+++++Lvtnsl++D+++ n++++glA
  CDO73309.1  23 RALIKQESAAIRASFReEDSYARHNNVAKLLYIHMLGFEAHFGQIECLKLVASPRFADKRLGYLGIMLLLDESQEVLTLVTNSLKNDMNHANMYVVGLA 121
                 7789************99999****************************************************************************** PP

                 HHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC.....HHHHHH CS
   Adaptin_N 100 LrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlll.....kllpkl 193
                 L++ ++i ++e+++dla++i+kll ++++y+rkkAal++l++++k pdl +++ v++ k+ll+d+++gv+l+A++l +e+ ++ + ++     +++p+l
  CDO73309.1 122 LCTFADIASEEMSRDLAHEIEKLLGSSNTYIRKKAALCALRVIRKVPDLASQF-VSKSKHLLADRNHGVLLTAITLVTEL-CEIDPACveefrNAVPLL 218
                 *************************************************9885.**************************.888888889999****** PP

                 HCCHHHHH...........HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.......CSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHH CS
   Adaptin_N 194 vrrLcnll...........teldpwlqvkiiklltrlarqepeerskkellesllnllq.......ssnnaVlletvnlivelapknelivlavnaLvr 274
                 vr+L+ l+           +++dp+lqvki++l++ l + + +++   e+++++l++++       +++n++l+etv ++ e++ ++ l+v a+n+L++
  CDO73309.1 219 VRHLKSLVttgyspehdvsGITDPFLQVKILRLMRLLGKGDARAS---ETMNDILAQVAtntdsskNVGNSILYETVMTVLEIEADSGLRVMAINILGK 314
                 ***************************************888888...79************************************************* PP

                 HHHSSCCTCHHHHHCHHHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSC CS
   Adaptin_N 275 llsskdenlryvaLrtllkivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfa 372
                 +ls++d+n+ryvaL+tl+k+v  +++avq h+++++++l+ d d+sir++al+l+++l++e+Nv+ +++eL+ ++ evad +fk  + ++I+  ae+fa
  CDO73309.1 315 FLSNRDNNIRYVALNTLNKVVAIDTNAVQrHRNIILDCLR-DGDISIRRRALELSYALINEQNVRVLIRELLAFL-EVADDEFKLGMTTQICLAAERFA 411
                 ****************************************.**********************************.*********************** PP

                 CHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT................HHHHHH CS
   Adaptin_N 373 tdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygelvsn.............tesasdllr 457
                 ++++w++d++l++l+l+g++v++ei++++++l+ ++pel++++++kL+  l + i++e +  aa W++Gey+e + +             ++++ dll 
  CDO73309.1 412 PNKRWHIDTVLRVLKLAGNFVREEILSAFIRLVAHTPELQAYTASKLYTSLRSdISQESLTLAATWVIGEYSEILVEgglvdedqpkpitDKEIIDLLV 510
                 ************************************************999999***********************************555999**** PP

                 CTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC..THXHHHHHHHHHHHXXSHHHHHHHHHHHHHHCCX CS
   Adaptin_N 458 slaekfvlesekvklqiltalvKlyltspdk.etqekliqlvlslatssdlevrdRaveylqllssa 523
                 s++ +++++   ++  ++ta +K +++  +   +qe++++l+ +++ts +le+++Rave+ +l++++
  CDO73309.1 511 SVLDSPYANYL-TRPFVITAVTKISARPTTSpAQQERIRDLLMTYTTSPELELQQRAVEFASLFNLG 576
                 *******9999.*************66543315677**************************99875 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   4.7e-28   1.7e-24       4     111 .]     726     833 ..     724     833 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 4.7e-28
                      EEEEETTEEEEEEEEE.TTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEESCTTS-EEEEEEEEEE CS
  Alpha_adaptinC2   4 vlyekddlqIgfkfek.perpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllienpskkplrmrlrisyk 96 
                      ++y+ ++l++++  +  p+rpg++ri ++ft +  +p++ ++fqaavpks++lq+ p+ss +++p  g   tq++++ +p +  +r+rlrisy+
       CDO73309.1 726 TAYDRNELRVTLTPQTsPTRPGLVRILAHFTTTGANPVTGLNFQAAVPKSQQLQMAPISSPDVHP--GRVETQEMRVLAPVGANVRLRLRISYN 817
                      79**************************************************************9..*************************** PP

                      .CTCEEEEEEEEEEE- CS
  Alpha_adaptinC2  97 .vgqaikeqidvlkfp 111
                        g a++eq+d+  fp
       CDO73309.1 818 vAGHAVQEQVDFAGFP 833
                      8888********9998 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   2.4e-10   8.5e-07       4     147 ..     119     275 ..     116     297 .. 0.79
   2 !    5.5   0.5    0.0044        16      27      80 ..     313     366 ..     306     425 .. 0.68
   3 ?   -0.5   0.0       0.3   1.1e+03      98     133 ..     527     561 ..     502     568 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.4e-10
        Cnd1   4 alairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiis 102
                 +la+ t + i  +++   l  +++k L  ++ y+Rk aa++ +++i++     ++f+s+ ++ll D n+ V   a+++ te+ e ++ a ++ +++ + 
  CDO73309.1 119 GLALCTFADIASEEMSRDLAHEIEKLLGSSNTYIRKKAALCALRVIRKVPDLASQFVSKSKHLLADRNHGVLLTAITLVTELCEIDP-ACVEEFRNAVP 216
                 689999999999*************************************************************************95.66666666666 PP

        Cnd1 103 klsdalne...............csewgqitilefLlsyipkdkqeaeslveklcprlqh 147
                  l+ +l++                +   q++il+++    + d++ a + ++ + +++ +
  CDO73309.1 217 LLVRHLKSlvttgyspehdvsgiTDPFLQVKILRLMRLLGKGDAR-ASETMNDILAQVAT 275
                 666655554455666666666666666677777766666666666.66666666555554 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0044
        Cnd1  27 rkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanala 80 
                  k L+ +d  +R  a+ ++ k++  d+  ++ + + ++++l+D + +++  al 
  CDO73309.1 313 GKFLSNRDNNIRYVALNTLNKVVAIDTNAVQRHRNIILDCLRDGDISIRRRALE 366
                 556666666677777777777766666666666666777777766666665543 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.3
        Cnd1  98 pdiisklsdalnecsewgqitilefLlsyipkdkqe 133
                 ++ + k+s a  + s ++q  i ++L++y+++ + e
  CDO73309.1 527 ITAVTKIS-ARPTTSPAQQERIRDLLMTYTTSPELE 561
                 45566666.56789999************9998875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.049   1.7e+02      31      55 ..     136     160 ..     103     196 .. 0.73
   2 ?   -3.4   0.0       3.8   1.4e+04      11      44 ..     241     278 ..     239     283 .. 0.52
   3 !    9.2   0.2   0.00045       1.6      32      85 ..     308     367 ..     294     386 .. 0.73
   4 ?    2.3   0.0     0.063   2.3e+02      29      84 ..     502     567 ..     486     571 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.049
      HEAT_2  31 ealpaLvellededpavRraaaeaL 55 
                 ++   + +ll ++++++R+ aa  +
  CDO73309.1 136 DLAHEIEKLLGSSNTYIRKKAALCA 160
                 56778899999********999854 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.8
      HEAT_2  11 dpdpevrr.aairaLg...rignpealpaLvelleded 44 
                 dp+ +v++ +  r Lg     ++++  ++L ++++++d
  CDO73309.1 241 DPFLQVKIlRLMRLLGkgdARASETMNDILAQVATNTD 278
                 55556665455566665533444455566666664433 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00045
      HEAT_2  32 alpaLvellededpavRraaaeaLgai...gd...pealpaLkellddddddvvReaAae 85 
                 a+++L ++l++ d ++R+ a ++L ++   ++   ++  ++ +++l+d d +++R+a + 
  CDO73309.1 308 AINILGKFLSNRDNNIRYVALNTLNKVvaiDTnavQRHRNIILDCLRDGDISIRRRALEL 367
                 567777788888888888888888755443332235667888888888888877776544 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.063
      HEAT_2  29 npealpaLvelled..edpavRraaaeaLgaig........dpealpaLkellddddddvvReaAa 84 
                 ++e++++Lv++l++  ++  +R  +++a  +i          +e ++ L++ +++ ++ + +++A+
  CDO73309.1 502 DKEIIDLLVSVLDSpyANYLTRPFVITAVTKISarpttspaQQERIRDLLMTYTTSPELELQQRAV 567
                 679999******885568899999999999995333332223555666666566656655566655 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.032   1.2e+02       5      23 ..     141     159 ..     138     163 .. 0.93
   2 ?   -1.9   0.0       1.7     6e+03       8      29 ..     181     202 ..     180     203 .. 0.85
   3 ?    2.5   0.0     0.066   2.4e+02       4      28 ..     311     335 ..     308     337 .. 0.81
   4 ?    3.6   0.0     0.029     1e+02       3      22 ..     347     366 ..     346     372 .. 0.88
   5 ?   -3.6   0.0         5   1.8e+04      16      28 ..     432     444 ..     431     446 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.032
                 HHHHHT-SSHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAaka 23 
                 + kll +++  +R+ Aa++
  CDO73309.1 141 IEKLLGSSNTYIRKKAALC 159
                 6899*************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                 HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgalae 29 
                 ll D +  V  +A+  +++l+e
  CDO73309.1 181 LLADRNHGVLLTAITLVTELCE 202
                 678888889999*******998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.066
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +l k ls  + ++R+ A+++L +++
  CDO73309.1 311 ILGKFLSNRDNNIRYVALNTLNKVV 335
                 5557789999**********98765 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.029
                 HHHHHHHT-SSHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAak 22 
                 +++l +l+D + ++R+ A++
  CDO73309.1 347 NIILDCLRDGDISIRRRALE 366
                 5799************9987 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 5
                 HHHHHHHHHHHHH CS
        HEAT  16 VReaAakaLgala 28 
                 VRe  + a+ +l+
  CDO73309.1 432 VREEILSAFIRLV 444
                 8998899988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 5469.55
//
Query:       CDO73310.1  [L=1131]
Description: hypothetical protein BN946_scf185008.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-20   71.8   3.4    1.9e-19   70.3   3.4    1.9  1  SF3b1          Splicing factor 3B subunit 1
    3.1e-10   40.3  16.7     0.0015   18.9   0.1    7.9  9  HEAT_2         HEAT repeats
    1.8e-09   37.9  12.0     0.0018   18.7   0.0    7.9 10  HEAT_EZ        HEAT-like repeat
    1.3e-08   34.4  11.8       0.01   16.0   0.1    9.4  9  HEAT           HEAT repeat
    3.2e-07   29.3   3.4     0.0037   15.9   0.1    3.4  3  Adaptin_N      Adaptin N terminal region
    3.8e-07   30.6   1.2       0.44   11.2   0.0    5.4  5  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    2.2e-06   27.8   9.4       0.37   10.8   0.0    6.6  8  Cnd1           non-SMC mitotic condensation complex subunit 1
    3.3e-05   23.5   1.1       0.32   10.5   0.0    3.9  3  CLASP_N        CLASP N terminal
    4.4e-05   23.2   1.4        1.5    8.4   0.0    5.1  5  NUC173         NUC173 domain
    0.00021   21.2   0.2       0.36   10.8   0.0    4.6  4  UME            UME (NUC010) domain
      0.001   18.3   0.1        4.5    6.3   0.0    4.3  4  MMS19_C        RNAPII transcription regulator C-terminal
  ------ inclusion threshold ------
      0.026   14.7   0.1      0.099   12.9   0.1    2.0  1  DUF3110        Protein of unknown function (DUF3110)
      0.028   13.5   1.7        1.2    8.1   0.0    3.7  4  Dopey_N        Dopey, N-terminal
      0.094   12.6   6.3        1.8    8.5   0.1    5.0  6  DUF3385        Domain of unknown function (DUF3385)


Domain annotation for each model (and alignments):
>> SF3b1  Splicing factor 3B subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   3.4   1.5e-22   1.9e-19       4     116 ..     139     264 ..     136     266 .. 0.74

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.5e-22
       SF3b1   4 kkkrSrWd.etpa................tpeatpkgetpv.........g.amgmatPpgalaamtPeqlqalrlekeidernrpltDeeLdallPke 75 
                 +k++ rWd e pa                          p+             ++a P++  ++mtP  ++a ++ +e d++nr+ltDeeLdallP+ 
  CDO73310.1 139 TKRKRRWDvEEPAkeekeenkenkdgmrpR---------PTlrrrlrvarRsRWDQAPPTAPEVPMTPIIMNAPSFMQE-DKHNRYLTDEELDALLPSA 227
                 78999***9888866655554444333221.........2233333323222355555566788*************99.******************* PP

       SF3b1  76 GYkilepPagYepirtparkllatptplagtaegfaiqeed 116
                 GY i++pP+gY+p+ +p  kl+atp+  +    gf+iqe++
  CDO73310.1 228 GYAIVTPPPGYAPLVRPP-KLTATPITDI---GGFHIQESS 264
                 ****************97.8999998443...68****976 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       9.5   1.2e+04      39      50 ..      88      99 ..      86     101 .. 0.53
   2 ?    2.6   0.0      0.14   1.8e+02      10      52 ..     330     381 ..     322     417 .. 0.72
   3 !    9.6   0.1    0.0009       1.2      11      81 ..     409     487 ..     400     493 .. 0.72
   4 !    9.0   0.3    0.0014       1.8      30      63 ..     509     542 ..     490     557 .. 0.81
   5 ?   -2.9   0.0       7.4   9.4e+03      27      58 ..     669     700 ..     656     720 .. 0.67
   6 ?    1.8   0.0      0.24   3.1e+02      21      54 ..     743     779 ..     741     799 .. 0.71
   7 !    8.4   0.0    0.0022       2.9      23      62 ..     828     871 ..     821     882 .. 0.82
   8 !   18.9   0.1   1.2e-06    0.0015       2      75 ..     843     930 ..     842     943 .. 0.80
   9 ?    2.3   0.0      0.18   2.3e+02      33      82 ..     954    1012 ..     934    1021 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.5
      HEAT_2 39 llededpavRra 50
                 le e+++vRra
  CDO73310.1 88 RLEKEEERVRRA 99
                455555666655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
      HEAT_2  10 ndpdpevrraairaLgrignp........ealpaLve.llededpavRraaa 52 
                 +   p vr++a+r++ +++ +        ++lp+L e  led++++    ++
  CDO73310.1 330 KNGTPPVRKTALRQITDKAREfgagplfdKILPLLMErTLEDQERHLLVKVI 381
                 5667899*********888877777888899999999455988887766666 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0009
      HEAT_2  11 dpdpevr...raairaLgr.ignpealpaLvellededpavRraaaeaLg....aigdpealpaLkellddddddvvRe 81 
                 d+d++ r   r++i +L++  g    + ++++ ++++d++vR + a+a +    a+g p+ lp+Lk+ +++++++  R 
  CDO73310.1 409 DEDYYARvegREIISNLAKaAGLAHMISTMRPDIDHADEYVRNTTARAFSvvasALGIPALLPFLKAVCRSKKSWQARH 487
                 5566655222455556664134445577777777899**********99644447788*************99998875 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0014
      HEAT_2  30 pealpaLvellededpavRraaaeaLgaigdpea 63 
                 + +++++   l+de + vR + a aL+a+++ +a
  CDO73310.1 509 RNLVDCIAHGLQDEQTKVRTMTALALAALAEAAA 542
                 46799***********************987654 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 7.4
      HEAT_2  27 ignpealpaLvellededpavRraaaeaLgai 58 
                  g  e++  +v+ l+de +  R+++ e++ ++
  CDO73310.1 669 AGVSEIVGRIVNDLKDEAEPYRKMVMETITKV 700
                 45567777777888888888888888877665 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.24
      HEAT_2  21 iraLg.rign..pealpaLvellededpavRraaaea 54 
                 + aLg r ++  ++++ +++  l+++++ vR++aa+ 
  CDO73310.1 743 VNALGvRVKPylTQIVSTILWRLNNKSAKVRQQAADL 779
                 6677755554224889999999999999999999975 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.0022
      HEAT_2  23 aLg..rignp..ealpaLvellededpavRraaaeaLgaigdpe 62 
                 + g  ++++p  ++lp L+++l++ ++ v++a ++ +g+i+d  
  CDO73310.1 828 VVGmtQMNPPvkDLLPRLTPILRNRHEKVQEATINLIGRIADRG 871
                 45555677767799**************************9854 PP

  == domain 8  score: 18.9 bits;  conditional E-value: 1.2e-06
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgai....gdpealpaLkelldddd 75 
                 + L  +l +  +++v+ a+i  +gri+++           ++   L++ll+ ++  +Rraa+++ g i    g +++l++L+  l+  +
  CDO73310.1 843 PRLTPIL-RNRHEKVQEATINLIGRIADRgaefvparewmRICFELLDLLKAHKKGIRRAAVNSFGYIakslGPQDVLQVLLTNLRVQE 930
                 6789999.899*****************977788888555556666667799**************76444478*******99887654 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.18
      HEAT_2   33 lpaLvellededpavRraaaeaLgai..........gdpealpaLkellddddddvvRea 82  
                  +pa+++  ++++ +vR    +aL+ +            ++++  L+++l+ d+d v R+ 
  CDO73310.1  954 IPAILNEYRTAELNVRTGCLKALSFVfeyvgpqsayYADSVVTMLEDALT-DRDLVHRQT 1012
                  55666666666666666666666644333322111124555666666554.344443433 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       7.5   9.6e+03      17      31 ..     270     284 ..     266     296 .. 0.51
   2 ?   -2.7   0.0         7     9e+03      30      50 ..     323     342 ..     320     343 .. 0.74
   3 ?   -2.8   0.0         8     1e+04      24      39 ..     355     371 ..     352     381 .. 0.74
   4 ?   -0.2   0.0       1.2   1.5e+03       3      40 ..     373     410 ..     371     411 .. 0.76
   5 ?   -1.4   0.0       2.9   3.7e+03      44      53 ..     449     458 ..     443     473 .. 0.73
   6 !    7.1   0.2    0.0062       7.9      22      55 .]     504     537 ..     496     537 .. 0.91
   7 !    8.4   0.0    0.0025       3.2      10      49 ..     738     777 ..     735     779 .. 0.89
   8 !   18.7   0.0   1.4e-06    0.0018      10      55 .]     824     867 ..     818     867 .. 0.88
   9 ?    2.1   0.0      0.22   2.9e+02       3      26 ..     898     919 ..     896     931 .. 0.67
  10 ?   -0.7   0.0       1.7   2.2e+03       3      48 ..     968    1013 ..     967    1015 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.5
     HEAT_EZ  17 gepellqplvpeilp 31 
                  ++  l+p++p  +p
  CDO73310.1 270 AAAAGLAPELPTEIP 284
                 222344444444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAag 50 
                 +++Ll   ++  ++VR++A++
  CDO73310.1 323 MRLLL-KIKNGTPPVRKTALR 342
                 55555.677788999999985 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8
     HEAT_EZ  24 plvpeilpaLl.alLnd 39 
                 pl ++ilp+L+ ++L+d
  CDO73310.1 355 PLFDKILPLLMeRTLED 371
                 67889999999555554 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.2
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLndd 40 
                 +R+  + ++ r++   ++l++p+v +il    +lL d+
  CDO73310.1 373 ERHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLLIDE 410
                 56666666777777788999999999999999999876 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2.9
     HEAT_EZ  44 VRaaAagaLg 53 
                 VR ++a+a++
  CDO73310.1 449 VRNTTARAFS 458
                 6777777776 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0062
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + p++  ++++ + +L+d++ +VR+ +a aL++l
  CDO73310.1 504 VLPHLRNLVDCIAHGLQDEQTKVRTMTALALAAL 537
                 668999*************************976 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.0025
     HEAT_EZ  10 aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAa 49 
                 ++G++ +  +  ++p++++i+   l +Ln++s++VR++Aa
  CDO73310.1 738 GFGTVVNALGVRVKPYLTQIVSTILWRLNNKSAKVRQQAA 777
                 67777777888999************************98 PP

  == domain 8  score: 18.7 bits;  conditional E-value: 1.4e-06
     HEAT_EZ  10 aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 a++++  +++ +++p v+++lp L + L++ + +V++a++  +g++
  CDO73310.1 824 AIANV--VGMTQMNPPVKDLLPRLTPILRNRHEKVQEATINLIGRI 867
                 56644..4999*********************************97 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.22
     HEAT_EZ   3 vRraAawaLGr.laggepellqplv 26 
                 +RraA++ +G  + + +p++   ++
  CDO73310.1 898 IRRAAVNSFGYiAKSLGPQD---VL 919
                 7*********8443333333...33 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 1.7
     HEAT_EZ    3 vRraAawaLGrlaggepellqp....lvpeilpaLlalLnddsdeV.RaaA 48  
                  vR +++ aL    +  +e++ p    + + ++  L  +L+ d d+V R++A
  CDO73310.1  968 VRTGCLKAL----SFVFEYVGPqsayYADSVVTMLEDALT-DRDLVhRQTA 1013
                  556666666....222333333111233333333333333.7888888887 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.51   6.5e+02       1      24 [.     322     344 ..     322     346 .. 0.84
   2 ?    0.4   0.1      0.81     1e+03      11      29 ..     444     462 ..     442     464 .. 0.83
   3 ?   -1.5   0.0       3.4   4.4e+03       1      28 [.     469     497 ..     469     497 .. 0.78
   4 !   16.0   0.1   7.9e-06      0.01       1      29 [.     511     539 ..     511     541 .. 0.94
   5 ?   -2.1   0.0       5.3   6.8e+03       5      27 ..     678     700 ..     674     703 .. 0.79
   6 ?    4.0   0.0     0.057        73       6      26 ..     763     782 ..     757     787 .. 0.78
   7 ?    5.0   0.0     0.029        37       1      29 [.     841     869 ..     841     870 .. 0.94
   8 ?    4.1   0.0     0.056        71       6      30 ..     888     912 ..     886     913 .. 0.81
   9 ?   -0.4   0.0       1.5   1.9e+03       4      28 ..     997    1021 ..     994    1024 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.51
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++ lllk ++   p VR++A++ +
  CDO73310.1 322 IMRLLLK-IKNGTPPVRKTALRQI 344
                 6888999.79999*******9865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.81
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                 + +  VR ++a+a+  +a+
  CDO73310.1 444 HADEYVRNTTARAFSVVAS 462
                 56788*********99887 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.4
                 HHHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLgala 28 
                 llP+l   +++ +s++ R + ++ + ++a
  CDO73310.1 469 LLPFLKAVCRSkKSWQARHTGIRIVQQIA 497
                 79999888966599999998887777775 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l++++ + l+D+  +VR ++a+aL+alae
  CDO73310.1 511 LVDCIAHGLQDEQTKVRTMTALALAALAE 539
                 68899**********************98 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 5.3
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 +++ l+D++   R+++ ++++++
  CDO73310.1 678 IVNDLKDEAEPYRKMVMETITKV 700
                 666699***999**999998776 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.057
                 HHHHT-SSHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLga 26 
                 ++ l+ +s++VR+ Aa   ++
  CDO73310.1 763 WR-LNNKSAKVRQQAADLTTR 782
                 55.79**********986555 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.029
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llP l   l+  + +V ea+++ +g++a 
  CDO73310.1 841 LLPRLTPILRNRHEKVQEATINLIGRIAD 869
                 799************************95 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.056
                 HHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   6 lkllsDpspeVReaAakaLgalaev 30 
                 l ll+     +R+aA++++g +a+ 
  CDO73310.1 888 LDLLKAHKKGIRRAAVNSFGYIAKS 912
                 66677777779***********996 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.5
                  HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgala 28  
                  +l  +l+D +   R++A   + +la
  CDO73310.1  997 MLEDALTDRDLVHRQTASTIVKHLA 1021
                  6788999*********998777776 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0029       3.7      80     179 ..     434     537 ..     423     554 .. 0.80
   2 !    6.3   0.1    0.0024       3.1     265     371 ..     591     704 ..     566     717 .. 0.80
   3 !   15.9   0.1   2.9e-06    0.0037     226     331 ..     835     947 ..     745    1020 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0029
                 CCHHHHHHCCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSH.........HHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHH CS
   Adaptin_N  80 vtnslqkDlkdpnqlirglALrvLssirvpelaedlapaikkllkdrsp.........yvrkkAalailklykkdpdllrkqlveeikellsdkdpgvv 169
                 ++++++ D  + ++++r+ + r+ s + ++   ++l+p +k++ +++++          v++ A+++  +++   p+l r+ lv++i + l+d++++v 
  CDO73310.1 434 MISTMRPDIDHADEYVRNTTARAFSVVASALGIPALLPFLKAVCRSKKSwqarhtgirIVQQIAIMMGCAVL---PHL-RN-LVDCIAHGLQDEQTKVR 527
                 6899********************************************994444444444444444444444...455.33.699**********9998 PP

                 HHHHHHHHHH CS
   Adaptin_N 170 laAvalleei 179
                 + +  +l  +
  CDO73310.1 528 TMTALALAAL 537
                 8877777766 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0024
                 HHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX.......XTTTTTTTCCCCSXX.TTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH CS
   Adaptin_N 265 ivlavnaLvrllsskdenlryvaLrtllkivkke.......pkavqhldlkifllk.tdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded 355
                 i+ +  +L+r  +++de ++ ++L+  ++ + +e       ++ +  + +k f ++ +  d+   +  +++ ++l+++  v+eiv  + + +k+ a++ 
  CDO73310.1 591 IKEVTIILIREFQTSDEEMKKIVLKVVQQCAATEgvtpqyiKQDILPDFFKAFWVRrMALDRRNYRQVVETTVELAQKAGVSEIVGRIVNDLKDEAEP- 688
                 5666667888888888889999999999999998888666666677778888888635779999999*************************999999. PP

                 HHHHHHHHHHHHHHHS CS
   Adaptin_N 356 fksklvkaIgrlaekf 371
                 +++++ ++I ++  + 
  CDO73310.1 689 YRKMVMETITKVVASL 704
                 *********9887665 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 2.9e-06
                 HH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST......HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX.XTTTTTTTCCCCSXXTTSX CS
   Adaptin_N 226 erskkellesllnllqssnnaVlletvnlivelapkne......livlavnaLvrllsskdenlryvaLrtllkivkke.pkavqhldlkifllktddd 317
                  + +k+ll++l++ l+++++ V  +t+nli ++a++ +        ++++  L +ll+ +++++r +a++++  i+k+  p+ v +  l   +++  ++
  CDO73310.1 835 NPPVKDLLPRLTPILRNRHEKVQEATINLIGRIADRGAefvparEWMRICFELLDLLKAHKKGIRRAAVNSFGYIAKSLgPQDVLQVLLTNLRVQERQS 933
                 333479*************************8888888888888789*****************************99887777766666667776777 PP

                 HHHHHHHHHHHCCC CS
   Adaptin_N 318 vsirlkaldlllkl 331
                 +  ++ a+ ++ ++
  CDO73310.1 934 RVCSTVAIAIVAET 947
                 77778888877666 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.53   6.7e+02      17      59 ..     388     430 ..     378     440 .. 0.86
   2 !   11.2   0.0   0.00034      0.44       2      72 ..     485     555 ..     484     560 .. 0.90
   3 ?   -0.6   0.0       1.6     2e+03      21      55 ..     667     701 ..     658     711 .. 0.77
   4 !    9.4   0.0    0.0013       1.6       9      58 ..     738     790 ..     732     825 .. 0.77
   5 ?    1.3   0.0      0.41   5.2e+02       2      47 ..     968    1013 ..     967    1022 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.53
  Vac14_Fab1_bd  17 lekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvak 59 
                    l+  +++y+++i+ ++   + D+d   R    E + n+ak+a 
     CDO73310.1 388 LDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG 430
                    56668999******************************99886 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00034
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifda 72 
                    ar+ g+  +  +ai ++ ++ ++l+++v+ + + ++D++++vR  ++ +l  +a +a    ++ + ++++ 
     CDO73310.1 485 ARHTGIRIVQQIAIMMGCAVLPHLRNLVDCIAHGLQDEQTKVRTMTALALAALAEAAAPYGIESFDNVLKP 555
                    78889999999*********************************999999999999988888888888765 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.6
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslynia 55 
                     k  ++eiv  +++ ++D+ +  R  ++E++  ++
     CDO73310.1 667 QKAGVSEIVGRIVNDLKDEAEPYRKMVMETITKVV 701
                    45567899999999999999999988888876665 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0013
  Vac14_Fab1_bd   9 gLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEs...lyniakva 58 
                    g+ +v  al+ ++k+yl +iv+++l  ++ k+++vR  a++    l  ++k++
     CDO73310.1 738 GFGTVVNALGVRVKPYLTQIVSTILWRLNNKSAKVRQQAADLttrLAIVIKQC 790
                    667778899***************************99987511144445554 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.41
  Vac14_Fab1_bd    2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyya 47  
                      r+g l +L +v   ++ +++ y +++v+++ ++++D+d   R +a
     CDO73310.1  968 VRTGCLKALSFVFEYVGPQSAYYADSVVTMLEDALTDRDLVHRQTA 1013
                     69999********************************998777665 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.1   2.7e+03      16      42 ..     315     341 ..     298     346 .. 0.64
   2 ?   -3.0   0.0       5.3   6.7e+03     118     146 ..     359     385 ..     357     401 .. 0.79
   3 ?   -0.0   0.0      0.62     8e+02      21      45 ..     433     457 ..     422     463 .. 0.84
   4 !   10.8   0.0   0.00029      0.37       7      49 ..     497     538 ..     492     552 .. 0.86
   5 ?   -1.5   0.0       1.8   2.3e+03      98     142 ..     672     714 ..     662     719 .. 0.66
   6 !    6.3   0.0     0.007       8.9      13      67 ..     748     803 ..     741     806 .. 0.89
   7 ?    5.4   0.0     0.013        17      12     104 ..     831     929 ..     824     947 .. 0.78
   8 ?    3.4   0.0     0.056        72      20      49 ..     992    1021 ..     969    1038 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
        Cnd1  16 pnlveylvepLrkrLkDedpyVRktaa 42 
                 +++ e  + +L  ++k   p VRkta+
  CDO73310.1 315 DEMKERKIMRLLLKIKNGTPPVRKTAL 341
                 444444455555566666677777776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
        Cnd1 118 tilefLlsyipkdkqeaeslveklcprlq 146
                 +il +L++ + +d++   +l+ k+++r+ 
  CDO73310.1 359 KILPLLMERTLEDQE--RHLLVKVIDRVL 385
                 688888988888888..899999998876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.62
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivv 45 
                  +++ +r  +   d+yVR+t+a ++
  CDO73310.1 433 HMISTMRPDIDHADEYVRNTTARAF 457
                 5788888899999*******99765 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00029
        Cnd1   7 irtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLi 49 
                  + +gc  +p+l  +lv+ + ++L+De+  VR  +a+++a L 
  CDO73310.1 497 AIMMGCAVLPHL-RNLVDCIAHGLQDEQTKVRTMTALALAALA 538
                 577888888886.6899***********************995 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.8
        Cnd1  98 pdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklc 142
                 ++i+ +++++l++  e  ++ ++e++++ +++      ++ e+l 
  CDO73310.1 672 SEIVGRIVNDLKDEAEPYRKMVMETITKVVASLGA--SDIDERLE 714
                 56666666677777777777777777777765544..55555555 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.007
        Cnd1  13 irvpnlveylvepLrkrLkDedpyVRktaaivvakL.ilndmvkekgflselakll 67 
                 +rv+  + ++v+ +  rL+ +++ VR++aa + ++L i  + + e ++ls+l   l
  CDO73310.1 748 VRVKPYLTQIVSTILWRLNNKSAKVRQQAADLTTRLaIVIKQCGEDQLLSKLGLVL 803
                 78999999999**************************9999999999999987665 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.013
        Cnd1  12 cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilnd..m...vkekgflselaklleDenprVvanalaalteisek.senaiynllpdiiskl 104
                 + +++  v  l+++L+  L+ +++ V++ ++ ++ ++ +++  +    ++  + +el++ll+ +++ ++  a++++  i++  +++ ++++l + +   
  CDO73310.1 831 MTQMNPPVKDLLPRLTPILRNRHEKVQEATINLIGRIADRGaeFvpaREWMRICFELLDLLKAHKKGIRRAAVNSFGYIAKSlGPQDVLQVLLTNLRVQ 929
                 666666788899999999999999999999999999965543352224566699***************************998899988877666555 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.056
        Cnd1   20 eylvepLrkrLkDedpyVRktaaivvakLi 49  
                  + +v+ L+ +L+D+d   R+ta  +v +L 
  CDO73310.1  992 DSVVTMLEDALTDRDLVHRQTASTIVKHLA 1021
                  778999**********************94 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0019       2.4     108     196 ..     447     530 ..     424     546 .. 0.69
   2 ?    1.0   0.0      0.21   2.6e+02      83     120 ..     745     782 ..     740     804 .. 0.73
   3 !   10.5   0.0   0.00025      0.32      94     159 ..     882     946 ..     855    1021 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
     CLASP_N 108 kiisqnanqalaallsnasfsprilqvlsval.qdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                 + ++++++ a++ + s+++  p +l +l + + + K+ q+R + +  ++++ + ++    ++  +l  + +++++  gl+D +++VR  +
  CDO73310.1 447 EYVRNTTARAFSVVASALG-IPALLPFLKAVCrSKKSWQARHTGIRIVQQIAIMMG---CAVLPHL--RNLVDCIAHGLQDEQTKVRTMT 530
                 5667777777777777777.555555555555145677888888888888888888...4444444..7888888888888888888754 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
     CLASP_N  83 qlkeqldpmveillptLlkllgdtKkiisqnanqalaa 120
                  l+ +++p++ ++++t+l +l ++   ++q+a+   + 
  CDO73310.1 745 ALGVRVKPYLTQIVSTILWRLNNKSAKVRQQAADLTTR 782
                 56778999999999999999999999999999754333 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00025
     CLASP_N  94 illptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkillt 159
                 +++  Ll+ll ++Kk i+ +a +++  + ++++  +++lqvl + l     q R +s+  ++i+ +
  CDO73310.1 882 RICFELLDLLKAHKKGIRRAAVNSFGYIAKSLG-PQDVLQVLLTNLRVQERQSRVCSTVAIAIVAE 946
                 5667899**************************.9999********999********998888765 PP

>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   3.5e+02       7      56 ..     435     485 ..     378     541 .. 0.84
   2 ?    0.0   0.0      0.44   5.7e+02      40      77 ..     671     708 ..     653     720 .. 0.70
   3 !    8.4   0.0    0.0012       1.5      22      88 ..     736     805 ..     719     813 .. 0.77
   4 !    6.4   0.0    0.0049       6.3      14      89 ..     853     929 ..     841     937 .. 0.69
   5 ?   -0.1   0.0      0.49   6.3e+02      19      66 ..     970    1017 ..     959    1040 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
      NUC173   7 eslLslkyqaawkevlevlsalfeklgkrs.spllkkilktlgelreseef 56 
                  s+++  + +a ++v ++++++f+++ ++   p+l + lk ++  ++s ++
  CDO73310.1 435 ISTMRPDIDHADEYVRNTTARAFSVVASALgIPALLPFLKAVCRSKKSWQA 485
                 457778888999999999999999998888888899999999887776653 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.44
      NUC173  40 lkkilktlgelreseefelkkeadevigaairamGpev 77 
                 +++i+ ++ +  ++e  +++k + e+i + ++++G+  
  CDO73310.1 671 VSEIVGRIVNDLKDEAEPYRKMVMETITKVVASLGASD 708
                 55566555444444444899999999999999999865 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0012
      NUC173  22 levlsalfeklgkrsspllkkilktlgelreseefelkk...eadevigaairamGpevvLevlPLnlee 88 
                 l  + +++++lg r++p+l++i+ t+    ++++++ ++   ++++ +   i+ +G +++L+ l L l e
  CDO73310.1 736 LDGFGTVVNALGVRVKPYLTQIVSTILWRLNNKSAKVRQqaaDLTTRLAIVIKQCGEDQLLSKLGLVLFE 805
                 566788999****************9877777766555521245556778899*********99988765 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0049
      NUC173  14 yqaawkevlevlsalfeklgkrs.spllkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnleee 89 
                 ++++ + +++++ ++ ++  + + +   ++i  +l +l +++++  +++a + +g + +++Gp+ vL+vl  nl  +
  CDO73310.1 853 HEKVQEATINLIGRIADRGAEFVpAREWMRICFELLDLLKAHKKGIRRAAVNSFGYIAKSLGPQDVLQVLLTNLRVQ 929
                 555555555555555555544444333555555666666666667999**********************9999854 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.49
      NUC173   19 kevlevlsalfeklgkrsspllkkilktlgelreseefelkkeadevi 66  
                    +l+ ls +fe +g++s+++ +++++ l +  ++++  +++ a +++
  CDO73310.1  970 TGCLKALSFVFEYVGPQSAYYADSVVTMLEDALTDRDLVHRQTASTIV 1017
                  568999************999999999999988888666666555544 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       1.4   1.7e+03      21      72 ..     478     529 ..     429     543 .. 0.69
   2 ?    3.5   0.0      0.05        64      25      64 ..     728     767 ..     717     787 .. 0.83
   3 ?   -1.0   0.0       1.3   1.7e+03      74      97 ..     918     941 ..     893     946 .. 0.82
   4 !   10.8   0.0   0.00028      0.36       9      67 ..     950    1007 ..     942    1015 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
         UME  21 hgkkslaekkraikaleeliklagssissalpqimacLqsaleidelrsaal 72 
                 ++kks + +   i+  +++  ++g ++ + l  ++ c  ++l++++ +  ++
  CDO73310.1 478 RSKKSWQARHTGIRIVQQIAIMMGCAVLPHLRNLVDCIAHGLQDEQTKVRTM 529
                 3455666666666666666667777777777777777777776655444444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.05
         UME  25 slaekkraikaleeliklagssissalpqimacLqsalei 64 
                 ++ e + ++ + + +++ +g +++++l+qi+++    l++
  CDO73310.1 728 QTTEDQVMLDGFGTVVNALGVRVKPYLTQIVSTILWRLNN 767
                 56788999**********************9998776666 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.3
         UME  74 vWatllsnlededleplleqtfal 97 
                 v ++ll+nl +++ ++ +++t+a+
  CDO73310.1 918 VLQVLLTNLRVQERQSRVCSTVAI 941
                 667888888888888888888887 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00028
         UME    9 iltrlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleidel 67  
                   +t +   ln+ +   +l+ +  ++kal+++++++g++ + ++  ++++L +al + +l
  CDO73310.1  950 PFTCIPAILNEYRTA-ELNVRTGCLKALSFVFEYVGPQSAYYADSVVTMLEDALTDRDL 1007
                  566677778888887.9999**********************************99776 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0035       4.5     330     403 ..     549     622 ..     548     643 .. 0.86
   2 ?    4.5   0.0     0.012        15      60     299 ..     689     777 ..     637     787 .. 0.51
   3 ?   -1.2   0.0      0.64   8.2e+02     278     308 ..     881     912 ..     878     946 .. 0.85
   4 ?    0.6   0.0      0.18   2.4e+02     332     365 ..     952     986 ..     951    1019 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0035
     MMS19_C 330 FstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksile 403
                 F+ vl+ l  g++    ++ +++L A+  +l  + ++++  +++++  +L++  +++d+e+k+ +L++++  + 
  CDO73310.1 549 FDNVLKPLWVGIRLHRGKSLAAFLKAIGFILPLMDPEYVQYYIKEVTIILIREFQTSDEEMKKIVLKVVQQCAA 622
                 677777788888888899999************************************************98776 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
     MMS19_C  60 yahailstllkllekkqtdlekeellnsyydrivprlltlvvsaastsssiltddrllevlgriinlivrslssskqqevleevvalfltgdaskkfep 158
                 y  ++ +t+ k+++            + + +r+ +rl++ +++a +++    +d+ +l+  g                                     
  CDO73310.1 689 YRKMVMETITKVVASLG--A------SDIDERLEVRLIDGIIYAFQEQ--TTEDQVMLDGFG------------------------------------- 740
                 55555555555555533..2......4555555555555555554432..444444444444..................................... PP

     MMS19_C 159 lsesasesqkqliilftailaalrkevklpdlsellnellellaseaespflrlaylrllallvNKflkdedlselldellesieeslieaedsqerka 257
                                                                                                                    
  CDO73310.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

     MMS19_C 258 aleiliwitKALvlRghplatelldkLlelLs.edaelgqlva 299
                       +++ AL +R +p+ t+++++ l  L+ ++a+++q++a
  CDO73310.1 741 ------TVVNALGVRVKPYLTQIVSTILWRLNnKSAKVRQQAA 777
                 ......4555555555555555555555555545555555555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.64
     MMS19_C 278 telldkLlelLs.edaelgqlvakafgvlvsd 308
                 ++++ +Ll+lL+ +++ +++++ ++fg +++ 
  CDO73310.1 881 MRICFELLDLLKaHKKGIRRAAVNSFGYIAKS 912
                 678899******99999**********99987 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.18
     MMS19_C 332 tvlpklvegfkssdsetkenyLvALshllkhv.Pk 365
                 t++p +++++++++ + ++ +L ALs + + v P+
  CDO73310.1 952 TCIPAILNEYRTAELNVRTGCLKALSFVFEYVgPQ 986
                 579***********************999988444 PP

>> DUF3110  Protein of unknown function (DUF3110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.7e-05     0.099      27      61 ..     289     323 ..     287     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.7e-05
     DUF3110  27 laFeseddAtryallLeaqdfpeptveaidaeeie 61 
                 laF + +dA+ +a +L+++d  e +v+++++++i 
  CDO73310.1 289 LAFFKPEDAQYFAKILKEEDETELSVDEMKERKIM 323
                 89*****************************9996 PP

>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.26   3.3e+02     113     172 ..     374     433 ..     361     438 .. 0.83
   2 ?    8.1   0.0   0.00097       1.2      99     178 ..     467     557 ..     461     659 .. 0.84
   3 ?    0.3   0.0      0.23     3e+02     117     170 ..     736     789 ..     690     807 .. 0.75
   4 ?   -0.8   0.0      0.49   6.3e+02     130     171 ..     833     878 ..     824    1027 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.26
     Dopey_N 113 kpqlleliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekvgeky 172
                 +  l+++i++ l +L++ +rp ++ +++ + p L +e+     +  +++ +l ++ g ++
  CDO73310.1 374 RHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLAH 433
                 67899*************************999998887777777777777777766655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00097
     Dopey_N  99 pGLlpll.....syaslsvkpqlleliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekvge......kyfyqclw 178
                 p+Llp+l     s+ s + + + ++++++  + +g ++ p l+ l+ ++  GL++e++ v   t   l  l e+  +      + + + lw
  CDO73310.1 467 PALLPFLkavcrSKKSWQARHTGIRIVQQIAIMMGCAVLPHLRNLVDCIAHGLQDEQTKVRTMTALALAALAEAAAPygiesfDNVLKPLW 557
                 566666622222345889999***************************************9999999999998877766655544445555 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.23
     Dopey_N 117 leliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekvge 170
                 l+ + + +  Lg +++p l  +++ +L  L++++  v +++ +l ++l   +++
  CDO73310.1 736 LDGFGTVVNALGVRVKPYLTQIVSTILWRLNNKSAKVRQQAADLTTRLAIVIKQ 789
                 555666666888899999999999999999999999999988888887765554 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.49
     Dopey_N 130 kLrpalkglilslLpGLeeensevfertlklleklkekvge....k 171
                 +++p +k l+  l p L + ++ v+e t++l+ ++ ++  e    +
  CDO73310.1 833 QMNPPVKDLLPRLTPILRNRHEKVQEATINLIGRIADRGAEfvpaR 878
                 5566666677777777777777777777777766665444333332 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.7   7.4e+03      80     129 ..     349     399 ..     313     403 .. 0.61
   2 ?    1.6   0.0      0.18   2.3e+02      19     154 ..     477     535 ..     433     542 .. 0.64
   3 ?    1.7   0.2      0.16   2.1e+02      14     149 ..     472     530 ..     459     623 .. 0.58
   4 ?    8.5   0.1    0.0014       1.8      40     147 ..     649     774 ..     649     788 .. 0.63
   5 ?   -1.4   0.0       1.5     2e+03       9      37 ..     839     866 ..     833     868 .. 0.83
   6 ?    0.4   0.0      0.41   5.2e+02      96     138 ..     962    1003 ..     886    1062 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.7
     DUF3385  80 eeyyptvvinaLlrilkdpsls.shhaavveaimnifktlglkcvpfLdqi 129
                  e+ +   + ++l +l +++l+ + ++  v++i  ++ +l+  + p++++i
  CDO73310.1 349 REFGAGPLFDKILPLLMERTLEdQERHLLVKVIDRVLYKLDDLVRPYVHKI 399
                 444444455556666666666645555666666666666666666666666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.18
     DUF3385  19 lkteqsqsirrevikllGilGALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifkt 117
                                                                                              + ++  + +++ ++ + +i   
  CDO73310.1 477 C----------------------------------------------------------------------------RSKKSWQARHTGIRIVQQIAIM 499
                 3............................................................................3333335556667777777777 PP

     DUF3385 118 lglkcvpfLdqiipallsvirtteesnlrefllqqLa 154
                 +g+ ++p L++++  + + +++ ++ ++r +   +La
  CDO73310.1 500 MGCAVLPHLRNLVDCIAHGLQDEQT-KVRTMTALALA 535
                 7777777777777777777776555.55555555555 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.16
     DUF3385  14 lLlnilkteqsqsirrevikllGilGALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaim 112
                  L  + ++++s++ r                                                                               ++ + 
  CDO73310.1 472 FLKAVCRSKKSWQARHT----------------------------------------------------------------------------GIRIVQ 494
                 44444444444444444............................................................................444444 PP

     DUF3385 113 nifktlglkcvpfLdqiipallsvirtteesnlrefl 149
                 +i   +g+ ++p L++++  + + +++ ++ ++r + 
  CDO73310.1 495 QIAIMMGCAVLPHLRNLVDCIAHGLQDEQT-KVRTMT 530
                 444444444455555555444444444333.333333 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0014
     DUF3385  40 ALDPykhkqveer....................aedkkrreeaaretdlsllmvglspsn.eeyyptvvinaLlrilkdpslsshhaavveaimnifkt 117
                 ALD  +++qv e+                     +d+++   ++ ++++++++ +l  s+ +e  +   i  ++  +++++ +   + +++   ++++ 
  CDO73310.1 649 ALDRRNYRQVVETtvelaqkagvseivgrivndLKDEAEPYRKMVMETITKVVASLGASDiDERLEVRLIDGIIYAFQEQTTE--DQVMLDGFGTVVNA 745
                 67777777776554444444444444444433322334444555555666666666666666666666666666666777765..56778888999999 PP

     DUF3385 118 lglkcvpfLdqiipallsvirtteesnlre 147
                 lg+++ p+L+qi++++l  +++ ++ ++r+
  CDO73310.1 746 LGVRVKPYLTQIVSTILWRLNNKSA-KVRQ 774
                 *****************99998877.4444 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.5
     DUF3385   9 pqLLelLlnilkteqsqsirrevikllGi 37 
                 ++LL  L+ il++  ++++++ +i l+G 
  CDO73310.1 839 KDLLPRLTPILRNR-HEKVQEATINLIGR 866
                 57999999999966.78899999999986 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.41
     DUF3385   96 kdpslsshhaavveaimnifktlglkcvpfLdqiipallsvir 138 
                  + + l+  +++ ++a+ ++f+ +g ++  + d ++  l  ++ 
  CDO73310.1  962 RTAELN-VRTGCLKALSFVFEYVGPQSAYYADSVVTMLEDALT 1003
                  444444.566777777777777777777777777766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.52
# Mc/sec: 6568.37
//
Query:       CDO73311.1  [L=350]
Description: hypothetical protein BN946_scf185008.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-48  163.7   0.1      1e-47  163.2   0.1    1.2  1  NMO       Nitronate monooxygenase
    1.3e-07   30.9   1.1    5.2e-07   29.0   1.1    1.8  1  IMPDH     IMP dehydrogenase / GMP reductase domain
      0.004   16.2   2.1     0.0058   15.7   2.1    1.2  1  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.1   1.7e-51     1e-47       2     330 ..       6     331 ..       5     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 1.7e-51
         NMO   2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvk.altdk..Pfgvnlflpkkdaadraekykkeleeaalelnie 97 
                 +++t+l+kik+pv+ +gm + ++++Laaav naGgLGv+++   t+  l+++i+ +k  l+dk  Pfgv l+lp+   + r             ++   
  CDO73311.1   6 TPVTKLFKIKHPVILAGMNVAAGPELAAAVTNAGGLGVIGGVGYTPKILRAQIKTLKdDLVDKnaPFGVDLLLPQVGGNAR-----------KTNYDYT 93 
                 57899***********************************88899*9*********945***99***********999888...........4677777 PP

         NMO  98 egvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd... 193
                 +g+   + ++v+ dek+ +   ++g+p++ v+++l++ag+ ++ +++  k+++k+  +G D + +q +e+GGh+G+ +      + L+p  +d  +   
  CDO73311.1  94 KGQL-PELLDVIIDEKASLFVCAVGVPPKWVIEKLHKAGIPVMNMVGHPKHVQKALDAGCDLICAQAGEGGGHTGDIPA-----TILIPACVDICKghk 186
                 7876.78899*****************************************************************5555.....799*****9999999 PP

         NMO 194 .......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleeleeakiatlalpeah 285
                        + vi aG + d+rg+aa La GA++v +gtrf++  e++a++ hk+++l a+ +d + t    Grp R+ +t  +   ++++++ ++  + +
  CDO73311.1 187 spltgepVYVIGAGAVYDGRGLAANLAWGAQAVWVGTRFVASVEAGAPKPHKEAVLSAGYEDAVTTLIYTGRPLRVRRTPYVDDWNNNRQEEIKELTSK 285
                 ***********************************************************************************9998666555544444 PP

         NMO 286 ...elakkiraalveagnteegllwagqgidrldkiisvkeLiesLve 330
                         +++   ++   e+     g ++  +++i+++k ++e++v+
  CDO73311.1 286 giiPYEHDLKQHPEKS--LEARTWLIGRVAALIHEILPAKVIVENMVN 331
                 2224455588877777..88899999999999********99999987 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   1.1   8.7e-11   5.2e-07      22     246 ..       3     232 ..       1     241 [. 0.84

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.7e-11
                 B--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SS.S-HHHHHHHHHHHHTSTTSXBXTTSXB-EEEEE..-SSTTHHHHHHHHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       IMPDH  22 dlktkltkkiklniPlvsaamdtvtesemAialareGgigvihkn.lsieeqaeevkkvkrspnaakdekgrllvgaav..gvkedalervkalveagv 117
                 +++t +tk +k++ P++ a m+  ++ e+A a++++Gg+gvi     +++   +++k++k     ++   g  l    v  ++++ + +  k  + + +
  CDO73311.1   3 TITTPVTKLFKIKHPVILAGMNVAAGPELAAAVTNAGGLGVIGGVgYTPKILRAQIKTLKDDLVDKNAPFGVDLLLPQVggNARKTNYDYTKGQLPELL 101
                 6899**************************************98747888888999999976554444444333333341145666777788888899* PP

                 SEEEEE-STSSSHHHHHHHHHHHHHTTTSEE.EEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHH.HHCTCT-EEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       IMPDH 118 dvlvvdsahghsekvleavkeikkkveevev.iaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevae.aakkagvpviaDG 214
                 dv++ + a      v    k++ +k+++  + +   v   + +++ ++ag d +    G G   t  + a + +p +  +++  +   +   v vi  G
  CDO73311.1 102 DVIIDEKASLFVCAVGVPPKWVIEKLHKAGIpVMNMVGHPKHVQKALDAGCDLICAQAGEGGGHTGDIPATILIPACVDICKGHKsPLTGEPVYVIGAG 200
                 ****99*********9999**999998866624455678899***************************************99983566667******* PP

                 ---SHHHHHHHHHTT-SEEEESCCCTTBTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 215 GikysgdivkAlaaGadavmlGsllagteEsp 246
                  +   + ++  la Ga+av +G  + +  E+ 
  CDO73311.1 201 AVYDGRGLAANLAWGAQAVWVGTRFVASVEAG 232
                 **********************9998888875 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.1   9.7e-07    0.0058     224     312 ..     138     234 ..     127     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.7e-07
                 E-SHHHHHHHHHTTESEEEE.--GGGTSSTT---HHHCHHHHHHHH..........SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHH CS
      FMN_dh 224 vltaedakraveaGvdgivv.SNHGGRqldgapatidvLpeiveavgg........rievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGe 312
                 v +++ +++a++aG+d i   +  GG      pati  +p++v+ ++g         + v+  g +  G   +  la GA+av++G  f+  + ag  
  CDO73311.1 138 VGHPKHVQKALDAGCDLICAqAGEGGGHTGDIPATI-LIPACVDICKGhkspltgePVYVIGAGAVYDGRGLAANLAWGAQAVWVGTRFVASVEAGAP 234
                 568999***********9864677777777788888.57999999964455555558********************************999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2272.24
//
Query:       CDO73312.1  [L=1681]
Description: hypothetical protein BN946_scf185008.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-13   50.4   0.1    2.4e-13   50.4   0.1    4.9  5  PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal ta
     0.0027   17.3  15.8     0.0027   17.3  15.8    7.3  6  HMMR_N          Hyaluronan mediated motility receptor N-termi
  ------ inclusion threshold ------
      0.011   16.3  23.7      0.011   16.3  23.7    7.8  7  Fez1            Fez1
        5.2    7.1   6.3         10    6.1   6.3    1.5  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       1.6     7e+03      32      63 ..     681     721 ..     676     726 .. 0.54
   2 ?   -2.8   2.4       2.3     1e+04      20      35 ..     950     965 ..     905    1003 .. 0.52
   3 ?   -2.9   1.1       2.4   1.1e+04      19      54 ..    1316    1351 ..    1309    1406 .. 0.58
   4 ?   -2.2   0.7       1.5   6.6e+03      58      61 ..    1504    1507 ..    1466    1536 .. 0.57
   5 !   50.4   0.1   5.4e-17   2.4e-13       1      83 []    1573    1651 ..    1573    1651 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
  PACT_coil_coil  32 adlrllarigvelk.......k..kkkskeeekrrkprrkl 63 
                     a  +++++++ve++       k  ++ + e+++r++ + ++
      CDO73312.1 681 ALEEMIEELKVEIEsctadkeKaeEALQTEKSERARDKERW 721
                     44568888888886555444313333344444445555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
  PACT_coil_coil  20 llqlevfqacnkadlr 35 
                     ++ l+ +++  kad +
      CDO73312.1 950 ETALKAAEKKMKADEE 965
                     2333333444444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.4
  PACT_coil_coil   19 Lllqlevfqacnkadlrllarigvelkkkkkskeee 54  
                      Lll l+  +       + l++i+ e ++ +k+ +++
      CDO73312.1 1316 LLLDLRRTESDMADVREQLQHIKQENHELEKELRSN 1351
                      555555555555555555666655553211111111 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.5
  PACT_coil_coil   58 kprr 61  
                      k++r
      CDO73312.1 1504 KAER 1507
                      2222 PP

  == domain 5  score: 50.4 bits;  conditional E-value: 5.4e-17
  PACT_coil_coil    1 rleReeslRkdlayqKrYLllqlevfqacnkadlrllarigvelkkkkkskeeekrrkprrklrsaatavraiaRmrvlarkW 83  
                      +++Re ++R dl yqK+YLl++++  ++++++ l+++arig  +      +++++++ + rk++s +  +++i+R r+++++W
      CDO73312.1 1573 KFTREWTFRCDLGYQKQYLLVLMARLERNEEKILAAIARIGYPQ----ILSNPSPPKAKCRKFKSLVDSIIFIHRSRRASEHW 1651
                      799**************************************999....456789999999*********************99 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.7  19.2         4   1.8e+04     208     329 ..     699     828 ..     669     832 .. 0.55
   2 !    7.1  19.6   0.00072       3.2     187     306 ..     830     942 ..     821     947 .. 0.85
   3 !   17.3  15.8   5.9e-07    0.0027     184     309 ..     946    1063 ..     942    1066 .. 0.85
   4 ?   -3.5   5.3       1.3   5.7e+03     196     255 ..    1156    1205 ..    1115    1300 .. 0.44
   5 ?   -1.0  23.0      0.22   9.7e+02     187     313 ..    1316    1455 ..    1300    1474 .. 0.71
   6 ?   -0.5  16.5      0.15   6.9e+02     165     287 ..    1443    1572 ..    1438    1576 .. 0.70

  Alignments for each domain:
  == domain 1  score: -9.7 bits;  conditional E-value: 4
      HMMR_N 208 Lkeklvs.lekekieekseteklleyieelsnvseql.ekykldiaqleellke....kndeiesLkssLeekeqelskqvkdlnekcklle..kekee 298
                  kek  + l+ ek e   + e+  e ++e+++  e +    ++++ ++ee +k     +++ i+++ + L    +e +  ++ l++    le  +e+  
  CDO73312.1 699 DKEKAEEaLQTEKSERARDKERWRERMTEVEKGVEGIvADLEKRLGEAEEAAKRasldRAEGIKDVENRLAVVMVEKDVLAERLKKAEAALEngRELGA 797
                 233332202233333334445555555555554444433445555555666554111134556666666655555444444445555555555556667 PP

      HMMR_N 299 lvreeeekeqtlsaEleelkeklklkeqeaq 329
                 +v+ ++e+  +++ El++ + ++k  e+e+ 
  CDO73312.1 798 EVNAANERLANVKGELQNAQRQIKELEDEVM 828
                 8999999999999999999999999888875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00072
      HMMR_N 187 meaklqvtqknLeeskakvaqLkeklvslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdl 285
                  +a+l +t++ L++ +++ a+L++ l++ ++e ++   + e l+e + +l++  +++   +   aq+e  +++ n+ i++L ++L   ++    +v+ l
  CDO73312.1 830 SDARLDETEAALHAERKRTAALEDELREKMNELTDAVHHAEDLEENVRKLRAQLREA---ESTCAQYEADAAADNSRIQDLEQQLAVAQE----NVNHL 921
                 568899*********************************************999999...999*******************99976665....77777 PP

      HMMR_N 286 nekckllekekeelvreeeek 306
                  +++++ ++e++ lv e+e  
  CDO73312.1 922 AAELEQEQQENDRLVDEAERS 942
                 777777777777666666544 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 5.9e-07
      HMMR_N  184 QedmeaklqvtqknLeeskakvaqLkeklvslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelsk 280 
                   ++me  l++++k++++  ++va Lk  + s+e+         ++++  +++l   + ++   + +++ le  l+ + +e+  L++ + ++     k
  CDO73312.1  946 ARQMETALKAAEKKMKADEEEVATLKATIASMERA------AEKQQERSVSQLGPSASTV-ALQAEVETLEAELADAHKELARLQTVIAQSPA--RK 1033
                  579***********************999777665......5566777889999999998.8899************************9999..66 PP

      HMMR_N  281 qvk.dlnekckllekekeelvreeeekeqt 309 
                   ++  ++++++llekeke+l+++ +  +++
  CDO73312.1 1034 AIEkAKDARIELLEKEKEDLLERLKSTKNQ 1063
                  66515789************9987766554 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.3
      HMMR_N  196 knLeeskakvaqLkeklvslekekieekseteklleyieelsnvseqlekykldiaqlee 255 
                  k+Le++++++ +L++ +  l +         e+ +  ie+l++ + +    k d++ l++
  CDO73312.1 1156 KQLEDAREHILALEDEIARLCRR-------EERRVRRIERLRCRKCRT---KIDMRGLQS 1205
                  44444444444444444333333.......223333344444433333...333333333 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.22
      HMMR_N  187 meaklqvtqknLeeskakvaqLkeklvslekek.....ieekset..eklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeq 276 
                  +  +l+ t+ ++ + +++++ +k+ + +leke      +e+k+     k  e  e++++++++  +   d ++l+   +++ +e++ Lks+  ++++
  CDO73312.1 1316 LLLDLRRTESDMADVREQLQHIKQENHELEKELrsnatAEQKARLleAKVAENLENMEQLRQERSMLAADHKELQRRYAKASEEVNRLKSEFAASQT 1412
                  4456666677777777777777777777666654444456666544367778888899999999999****************************** PP

      HMMR_N  277 elskqvkdlnekcklle......kekeelvreeeekeqtlsaE 313 
                    +++ ++l+ +  ++e      +++   +++ e  + ++ +E
  CDO73312.1 1413 SHDNRRHELDLRALEIEdlrralSDQASNLERLEAEKARMATE 1455
                  9999999999888888866655533333444444444455555 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.15
      HMMR_N  165 eLmklrnkleakekevsvk.QedmeaklqvtqknLeeskakvaqLkeklvslekekieeksetek.lleyieelsnvseqlekykldiaqleellk. 258 
                  e +++ + + a+ek  +++    +ea+l+ + ++ e++   + +L+ ++ ++e ek+ee+++ e+ + +  ++++ ++e+l+  k++ ++l+   k 
  CDO73312.1 1443 ERLEAEKARMATEKGDVARtVAALEADLRRVRRDAEAFGRDLKALRAQKEKMEAEKKEERTKAERaQKQAQAQIRILKEELDGHKEKARELQKQWKg 1539
                  5556666666666654444156789999999999999999999999999999999999998886515556678899999998888887777765431 PP

      HMMR_N  259 ....ekndeiesLkssLeekeqelskqvkdlne 287 
                      + +++++ Lk++ +++ + l  q++ l++
  CDO73312.1 1540 hvcaADDRQLVALKQQHNKECKGLMVQIRYLKA 1572
                  111166778888888877777767766666655 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.8       1.8   8.3e+03      91     126 ..     296     329 ..     276     344 .. 0.44
   2 ?   -2.2  13.6         1   4.7e+03      49     146 ..     681     784 ..     672     794 .. 0.55
   3 ?   16.3  23.7   2.4e-06     0.011      30     156 ..     810     937 ..     800     944 .. 0.84
   4 ?    2.7  16.9     0.033   1.5e+02      27     150 ..     939    1063 ..     935    1066 .. 0.74
   5 ?    9.1   3.1   0.00036       1.6      30     164 ..    1127    1261 ..    1115    1270 .. 0.60
   6 ?   -0.7  21.2      0.36   1.6e+03      46     148 ..    1319    1411 ..    1269    1421 .. 0.47
   7 ?   11.3  22.4     8e-05      0.36      24     158 ..    1398    1537 ..    1394    1541 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
        Fez1  91 kleeelkelreelselsleeeeaalesdeakaqrqe 126
                 +l  e+++ r+e ++++  +++ ++++d+a +q+++
  CDO73312.1 296 ELIPEVAQSRSEQHQAA--SADDRYHADDASKQQSQ 329
                 33334444444433322..22223444444333333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
        Fez1  49 ekeeeikeleesleektlelevcenelqrk....kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.....aeeleelkreve 138
                 + ee i+el+ ++e+ t++ e+ e+ lq +      ++e  re+++++e+ ++++  +l++   e+eeaa   ++a   r+e     +++l+    e +
  CDO73312.1 681 ALEEMIEELKVEIESCTADKEKAEEALQTEkserARDKERWRERMTEVEKGVEGIVADLEKRLGEAEEAA---KRASLDRAEgikdvENRLAVVMVEKD 776
                 3466666666666666666666666666662222555677888888888888888888888655544443...22223333322222444444444444 PP

        Fez1 139 rlraeLke 146
                  l ++Lk+
  CDO73312.1 777 VLAERLKK 784
                 44444444 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.4e-06
        Fez1  30 lseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa..lesdeakaqrqe 126
                  +e+ + + q++el+ ++ +++++++e+e++l+   +    +e+el++k +e +    ++e lee++++lr +l+e++++ ++ +  +++d+++ q  e
  CDO73312.1 810 KGELQNAQRQIKELEDEVMRSDARLDETEAALHAERKRTAALEDELREKMNELTDAVHHAEDLEENVRKLRAQLREAESTCAQYEadAAADNSRIQDLE 908
                 567778899********************************************999999***************9987665554422455555555555 PP

        Fez1 127 aeeleelkreverlraeLkeerqkkeeqas 156
                  ++l+  +++v++l aeL++e+q++++ ++
  CDO73312.1 909 -QQLAVAQENVNHLAAELEQEQQENDRLVD 937
                 .8999999****************998765 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.033
        Fez1   27 tqklseiv.alkaqlrelrakleekeeeikeleesleektlelevcenelqrk...kseaellrekvekleeelkelreelselsleeeeaalesde 119 
                  +++ se+  ++ + l+ +++k+++ eee+ +l++++ + ++  e+ +++   +   ++++  l+ +ve+le+el++ ++el++l++  +++ +++  
  CDO73312.1  939 AERSSELArQMETALKAAEKKMKADEEEVATLKATIASMERAAEKQQERSVSQlgpSASTVALQAEVETLEAELADAHKELARLQTVIAQSPARK-- 1033
                  56666665357899999999999999999999999999998888877765555677566667788899999999999999999665444432222.. PP

        Fez1  120 akaqrqeaeeleelkreverlraeLkeerqk 150 
                     ++++  ++e l++e e l ++Lk  +++
  CDO73312.1 1034 -AIEKAKDARIELLEKEKEDLLERLKSTKNQ 1063
                  .233444567899999999999999998887 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00036
        Fez1   30 lseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe 126 
                   +e+    a++ +   +le+    + +l ++le+  + +  +e+e++r   ++e    ++e+l     +++ +++ l++ +   +++  ea +    
  CDO73312.1 1127 QHELDRANASIDDKLYRLEDAGFGAVDLMKQLEDAREHILALEDEIARLCRREERRVRRIERLRCRKCRTKIDMRGLQSADVGDESSILEASTTSLP 1223
                  3444444444444444444444555555555555555666666666666555555555555555555555554444444333333444444444445 PP

        Fez1  127 aeeleelkreverlraeLkeerqkkeeqassFeqERrt 164 
                  +e  +  +r++e lr+eL+e + + e+++ ++++ER++
  CDO73312.1 1224 SEPPTPPTRTTEALRSELEELNTQLESMKRAWDEERKK 1261
                  77888889999*************************97 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.36
        Fez1   46 kleekeeeikeleesleektlelevcenelqrk...kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkrever 139 
                  +l+++e+ + +++e+l++ ++e++++e+el+ +   +++a ll+ kv +  e++++lr+e s+l+++++e +             ++ ++ ++ev+r
  CDO73312.1 1319 DLRRTESDMADVREQLQHIKQENHELEKELRSNataEQKARLLEAKVAENLENMEQLRQERSMLAADHKELQ-------------RRYAKASEEVNR 1402
                  344445555555555555555555555554444333344444444444444444444444333332222221.............122233333333 PP

        Fez1  140 lraeLkeer 148 
                  l++e +  +
  CDO73312.1 1403 LKSEFAASQ 1411
                  333333333 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 8e-05
        Fez1   24 aevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdea 120 
                   ev++  se  a +++  + r++l+ +  ei++l+ +l++++ +le++e+e +r+ +e+  +  +v +le++l+++r+++++  ++ +  +++++++
  CDO73312.1 1398 EEVNRLKSEFAASQTSHDNRRHELDLRALEIEDLRRALSDQASNLERLEAEKARMATEKGDVARTVAALEADLRRVRRDAEAFGRDLKALRAQKEKM 1494
                  577777899999999999****************************************9999999*************9998776666555444333 PP

        Fez1  121 kaqrqe.....aeeleelkreverlraeLkeerqkkeeqassF 158 
                  +a+++e     +++ ++ ++++  l++eL   ++k  e ++++
  CDO73312.1 1495 EAEKKEertkaERAQKQAQAQIRILKEELDGHKEKARELQKQW 1537
                  3333332222355666778888888888888888877777777 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.3    0.0023        10      10      36 ..    1176    1200 ..    1175    1202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0023
  Zn_ribbon_SprT   10 Cgreythhlsi.rrhnYrCrrCkgtLrg 36  
                      C+re   ++++ r ++ rCr+C+ ++ +
      CDO73312.1 1176 CRRE---ERRVrRIERLRCRKCRTKIDM 1200
                      6633...56665777799*****99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3146  (0.17547); expected 358.6 (0.02)
Passed bias filter:                      768  (0.0428356); expected 358.6 (0.02)
Passed Vit filter:                       245  (0.013665); expected 17.9 (0.001)
Passed Fwd filter:                       137  (0.00764125); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 4.00u 0.42s 00:00:04.42 Elapsed: 00:00:00.84
# Mc/sec: 6020.50
//
Query:       CDO73313.1  [L=157]
Description: hypothetical protein BN946_scf185008.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1121.49
//
Query:       CDO73314.1  [L=980]
Description: hypothetical protein BN946_scf185008.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.4   9.6    3.5e-08   33.1   9.6    1.7  1  DUF1752   Fungal protein of unknown function (DUF1752)


Domain annotation for each model (and alignments):
>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   9.6     2e-12   3.5e-08       1      28 []      52      79 ..      52      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2e-12
     DUF1752  1 lWkyytkkkkdlpngeRLENlSWRlWnk 28
                +W+ +t++k+++ ng RLEN+SWR+W k
  CDO73314.1 52 SWRSMTRQKNAIANGMRLENASWRTWWK 79
                8*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 6443.62
//
Query:       CDO73315.1  [L=528]
Description: hypothetical protein BN946_scf185008.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-10   39.9   0.0    4.3e-08   33.4   0.0    2.4  2  BTB            BTB/POZ domain
  ------ inclusion threshold ------
       0.29   11.6   1.1        1.3    9.5   0.1    2.4  2  DNA_binding_2  DNA-binding domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   4.8e-12   4.3e-08      11     110 ..      45     146 ..      39     147 .. 0.82
   2 !    4.0   0.0    0.0061        55      11      75 ..     260     326 ..     255     346 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4.8e-12
                 S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST..TTTTCCCEEEEETTS..GHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  11 cDvtlvvgdgkefkahkavLaarSpyFkalftsk..eieessvseielddv..epeafealLefiYtgeleit.seenleelLaaadllqiprlkkace 104
                  D+++   d+  f++h++vL+ +Sp+F a+f     +    +  + +l+dv  ++++++ +L+++Y+   ++  s + +  +L aa  ++ +++++ ++
  CDO73315.1  45 ADLIIPSSDQVDFHVHRLVLSLASPVFAAMFAIPqpP---GTDPHRPLEDVteDSDTLDVFLRICYPFADPTLeSLDRIRVVLPAATNYEAEAVIASMK 140
                 68888888899*********************99543...33334556666115689*********8644443679*********************** PP

                 HHHHHH CS
         BTB 105 eflkqs 110
                 ++l+qs
  CDO73315.1 141 RMLSQS 146
                 **9987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0061
                 S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST...TTTTCCCEEEEETTSGHHHHHHHHHHHHHSE CS
         BTB  11 cDvtlvvgdgkefkahkavLaarSpyFkalftsk...eieessvseielddvepeafealLefiYtge 75 
                  D +l+  d   f++ + + a +S+   ++ t     +  + s+ +++    ++ +++alL+ +Y+g 
  CDO73315.1 260 ADFILRSSDSIDFRVYRSIIALASSTILQQATPVdslG-LQLSQPVVYFVPEDSVVLDALLRACYPGA 326
                 588899999999*********99999999888886743.45566688888889999999999999986 PP

>> DNA_binding_2  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00015       1.3      10      38 ..     191     220 ..     190     225 .. 0.80
   2 ?   -0.4   0.2      0.17   1.5e+03      22      31 ..     517     527 ..     515     528 .] 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
  DNA_binding_2  10 dmiPnaWFYKLkdmgksRkhska.sssssn 38 
                    dmi+   +Y+L+ + ++Rk+ ++ +s  ++
     CDO73315.1 191 DMISAGAYYRLRRVDRTRKTCPSrRSPRKP 220
                    9*******************9874444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.17
  DNA_binding_2  22 dmgk.sRkhsk 31 
                    +m++ sR+hs+
     CDO73315.1 517 EMRRkSRGHSQ 527
                    79999****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3979.38
//
Query:       CDO73316.1  [L=550]
Description: hypothetical protein BN946_scf185008.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-11   44.5   0.0    7.8e-05   22.9   0.0    2.5  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.4e-09   7.8e-05      11      96 ..      33     126 ..      25     140 .. 0.73
   2 !   19.0   0.0   6.8e-08    0.0012      11     104 ..     254     349 ..     248     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.4e-09
                 S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST........TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-..CGGGHHHHHHHHHHHT- CS
         BTB  11 cDvtlvvgdgkefkahkavLaarSpyFkalftsk........eieessvseielddvepeafealLefiYtgeleit..seenleelLaaadllqi 96 
                 +D +l+  dg  f +h+++L+ +Sp F+++++          + +   +  i+    ++e+++ +L+ +Y+  ++ +  s + +   La+a +++ 
  CDO73316.1  33 SDFILRSSDGVDFFVHRIILSLSSPLFSTMLSLPqptddtseGVKCIRQPIIN-LTEDSETLDTFLRLCYPL-VDPPlaSFDLIRGALATATKYDA 126
                 7999****************************997765444333333333454.445788999999999976.34444666777777777777765 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.8e-08
                 S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCE..EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  11 cDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvs..eielddvepeafealLefiYtgeleit.seenleelLaaadllqiprlkkace 104
                  D++l+ +d+  f++h +  a +Sp   +l      + ++ s   ++  d ++ + +a+L+++Y+   +   +++ l ++L+aa +++++++++ ++
  CDO73316.1 254 ADLILRSKDDVDFRVHQMLIAFASPNILQLAPRI-AQIDTLSglPVHQLDEDSVVADAMLRMCYPVDHPRAmDTDVLIDVLEAAGKYRMKKVMQTIQ 349
                 799**************************99988.344444433344457778899********9988877789999**************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3627.20
//
Query:       CDO73317.1  [L=648]
Description: hypothetical protein BN946_scf185008.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-32  111.8   0.2    3.8e-32  110.6   0.1    1.7  2  VPS9      Vacuolar sorting protein 9 (VPS9) domain
    7.3e-19   67.8   0.6      2e-18   66.4   0.1    2.1  2  DUF5601   Domain of unknown function (DUF5601)
    3.7e-10   39.3   0.0      1e-09   37.9   0.0    1.7  1  CUE       CUE domain
    0.00012   21.5   0.0    0.00039   19.9   0.0    1.9  2  DMA       DMRTA motif
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.23   11.5   0.0    1.5  1  SNARE     SNARE domain


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.1   1.5e+04      29      50 ..      64      85 ..      62      87 .. 0.80
   2 !  110.6   0.1   1.1e-35   3.8e-32       4     103 ..     382     479 ..     379     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
        VPS9 29 eeiteavskseegeslgaDdlL 50
                e +t+a s ++++ +++aD lL
  CDO73317.1 64 EDLTSAPSVQSPKPPVNADVLL 85
                6677777889999999**9998 PP

  == domain 2  score: 110.6 bits;  conditional E-value: 1.1e-35
        VPS9   4 aseeLkklseaksPreKlkcllrtieeiteavskseegeslgaDdlLPiliyviikssppnlysnvqfikrFrsktllegeegYylttleaavefiesl 102
                 a++eL k++++k Pr+Kl c+l++++ i+ ++   + +++++aD +LPiliyv+ik++pp+l+snv+fi+rFr++++l++e+gYyl++l  av+fie++
  CDO73317.1 382 AQQELLKVNHYKAPRDKLICILNCCKVIFGLI--RHLHKDESADSFLPILIYVVIKANPPHLLSNVEFINRFRNPAKLQSEAGYYLSSLMGAVSFIETM 478
                 89******************************..99999***********************************************************9 PP

        VPS9 103 e 103
                 +
  CDO73317.1 479 D 479
                 7 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.1   5.6e-22     2e-18       1      65 []     260     324 ..     260     324 .. 0.99
   2 ?   -2.1   0.0       1.4   5.2e+03      14      35 ..     477     499 ..     446     511 .. 0.56

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 5.6e-22
     DUF5601   1 KqiksfvrkisqrsisieelSemVqdFyqnlaerlnktplyktvsseavedlldeiEkyimtrlY 65 
                 K+++sf++++ +r++++++++ +++dF++++a r++++++++++s+ + +++++++Ek++m+rlY
  CDO73317.1 260 KYLRSFLSNFAKRTFTVNDQVRLINDFLTFIAARMRESEVWRNASDAEFDNAMEGMEKLVMNRLY 324
                 89**************************************************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
     DUF5601  14 sisieelSemVq.dFyqnlaerl 35 
                 ++    lS++ q +F  n ++ +
  CDO73317.1 477 TMDHTSLSNITQeEFERNVEDAI 499
                 33334445555423555555555 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   2.9e-13     1e-09       6      42 .]     609     645 ..     606     645 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 2.9e-13
                 HHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHCC CS
         CUE   6 etLkemFPdldeevIravLrasngnvEatinaLLegs 42 
                 etL+++FP  d+ev+++vL+a+ g++   i+aLLe+s
  CDO73317.1 609 ETLRQIFPATDPEVVEWVLEANEGDLGKSIEALLEMS 645
                 89**********************************7 PP

>> DMA  DMRTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   3.7e+03       3      13 ..     572     582 ..     571     583 .. 0.86
   2 !   19.9   0.0   1.1e-07   0.00039       4      37 .]     608     641 ..     606     641 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
         DMA   3 PldiLarvFPn 13 
                 Pl+   r+F++
  CDO73317.1 572 PLNAISRIFNE 582
                 899999***86 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.1e-07
         DMA   4 ldiLarvFPnhkrsvLelvLqrCkGDVvqAIEqv 37 
                  ++L ++FP   ++v+e vL++  GD+ + IE +
  CDO73317.1 608 RETLRQIFPATDPEVVEWVLEANEGDLGKSIEAL 641
                 699*****************************75 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.4e-05      0.23      14      51 ..     376     413 ..     373     413 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXX CS
       SNARE  14 qsnveraqkeLkkavkyqksnRklkciillilviillv 51 
                 + ++  aq+eL k+++y   + kl ci+ ++ vi++l+
  CDO73317.1 376 EGFLMFAQQELLKVNHYKAPRDKLICILNCCKVIFGLI 413
                 567889*************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4268.32
//
Query:       CDO73318.1  [L=1068]
Description: hypothetical protein BN946_scf185008.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-24   85.3   0.0    1.1e-05   25.7   0.0    5.0  5  BTB              BTB/POZ domain
  ------ inclusion threshold ------
      0.018   15.7   0.7        7.7    7.2   0.0    3.7  3  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.5e-09   2.2e-05      11     107 ..      16     127 ..      10     130 .. 0.78
   2 ?   -3.4   0.0       1.3   1.2e+04      40      75 ..     158     190 ..     156     197 .. 0.75
   3 ?    2.8   0.0     0.015   1.3e+02      76     108 ..     304     338 ..     236     341 .. 0.62
   4 !   25.4   0.0   1.4e-09   1.3e-05       9     107 ..     531     645 ..     527     649 .. 0.76
   5 !   25.7   0.0   1.2e-09   1.1e-05       4     105 ..     750     857 ..     747     861 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.5e-09
                 S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.............TTTTCCCE.....EEEETTSGH.HHHHHHHHHHHHSEEEC-.CGGGHHHHHH CS
         BTB  11 cDvtlvvgdgkefkahkavLaarSpyFkalftsk.............eieessvs.....eielddvep.eafealLefiYtgeleit.seenleelLa 89 
                  D+++   d+  fk hk+vL+ +S +Fk++f+               e   +  +     +  +   ep +++e l++ +Y+ + +   + e++  lL+
  CDO73318.1  16 ADIIFCSSDHVCFKLHKLVLMLASAFFKDMFSLPqpfaglsplagsaE---EPAKhdglpV--VHVAEPgTVLEGLFRLCYPIRDPPLdTLEEVRPLLE 109
                 588888888899**********************9*******997642...3333223222..23444446999999999987755447799******* PP

                 HHHHHT-HHHHHHHHHHH CS
         BTB  90 aadllqiprlkkaceefl 107
                 aa ++q+++ +++ ++ l
  CDO73318.1 110 AALKYQMQEAVEITTRRL 127
                 *********999887665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
                 HHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSE CS
         BTB  40 lftskeieessvseielddvepeafealLefiYtge 75 
                  f +k  +e+ v+e+  ++   ++ ++lL +++ ++
  CDO73318.1 158 VFDQK-LTEAYVNEL--EELPVSDYRRLLWYCFNQK 190
                 56666.677787755..8999999999999998776 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.015
                 EEC-..CGGGHHHHHHHHHHHT-HHHHHHHHHHHH CS
         BTB  76 leit..seenleelLaaadllqiprlkkaceeflk 108
                   ++  + ++l+ lL aa+++q+++ + ++ e l+
  CDO73318.1 304 AAMPaiDPSELPFLLDAAEKYQMKKPIYILREQLS 338
                 3333467899999***********99888877765 PP

  == domain 4  score: 25.4 bits;  conditional E-value: 1.4e-09
                 TTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST........TTTTCCCE........EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHH CS
         BTB   9 elcDvtlvvgdgkefkahkavLaarSpyFkalftsk........eieessvs........eielddvepeafealLefiYtgeleit.seenleelLaa 90 
                 +  Dv++   d+  fk hk++La +S++F+++f           + +e++v         ++      ++++e l++ +Y+ e +   + +++  +L+a
  CDO73318.1 531 SSADVVFCSADHVNFKLHKIILALASEFFEDMFAIPqpvmiegaGRSEKEVRreeldglpVV-HVTEPSTVLEGLFRLCYPMEDPPLaTVDEVRVTLEA 628
                 567999999999**********************9999*99988445555555555544222.222334699999999999885554667889999*** PP

                 HHHHT-HHHHHHHHHHH CS
         BTB  91 adllqiprlkkaceefl 107
                 a ++++++ + ++++ l
  CDO73318.1 629 AMKYEMREAIGILTRRL 645
                 ******99887777666 PP

  == domain 5  score: 25.7 bits;  conditional E-value: 1.2e-09
                 HHHHTTTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCE....EEEETTSGHHHHHHHHHHHHHSE.EEC-..CGGGHHHHHHHHHHHT CS
         BTB   4 lresgelcDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvs....eielddvepeafealLefiYtge.leit..seenleelLaaadllq 95 
                 l+e  +  D+ + + dg ef + k +L  +Sp++++++ s++ +es++     e+ +   +++++++lL+ +Y+   l++   + + +++ Laaa+++ 
  CDO73318.1 750 LFEA-HGADLLIHTADGAEFGVSKDILRLASPVLYEQLASTPTDESDSPrpipEVIVVPESSDVMRILLNACYPVApLQVAstDLSVIVHALAAAEKYG 847
                 5554.889*********************************555555546677888899999***********96414443778899************ PP

                 -HHHHHHHHH CS
         BTB  96 iprlkkacee 105
                 +++ + ++ +
  CDO73318.1 848 MDKAVWQLRT 857
                 **99988776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0082        73      54      69 ..       8      23 ..       4      41 .. 0.76
   2 ?    7.2   0.0   0.00085       7.7      45      90 ..     330     374 ..     299     376 .. 0.78
   3 ?   -2.1   0.0       0.7   6.3e+03      57      69 ..     528     540 ..     523     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0082
                     CTSS-TT-EEEEEEES CS
  Methyltransf_11 54 klpfednsfDlvvsse 69
                     + pf+d+s D++++s+
       CDO73318.1  8 QRPFADASADIIFCSS 23
                     569***********97 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00085
                      EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11  45 vefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      + ++++ +++l+ ed+s+D  ++++v +h+  ++ a + + R+L+ 
       CDO73318.1 330 IYILREQLSNLK-EDSSVDSAWLYFVACHFRLRSLAQASALRCLRR 374
                      667777777775.899**************9999999999999986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.7
                      S-TT-EEEEEEES CS
  Methyltransf_11  57 fednsfDlvvsse 69 
                      f  +s D+v++s 
       CDO73318.1 528 FSHSSADVVFCSA 540
                      7789******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 6796.25
//
Query:       CDO73319.1  [L=470]
Description: hypothetical protein BN946_scf185008.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-91  306.8   0.2    2.2e-91  306.4   0.2    1.2  1  HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C t
    1.7e-83  278.7   0.1    3.1e-83  277.9   0.1    1.4  1  HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N t
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.023   14.6   0.0    1.6  1  ACP_syn_III     3-Oxoacyl-[acyl-carrier-protein (ACP)] syntha
        0.1   12.8   0.0        2.1    8.6   0.0    2.3  2  ACP_syn_III_C   3-Oxoacyl-[acyl-carrier-protein (ACP)] syntha


Domain annotation for each model (and alignments):
>> HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.4   0.2     5e-95   2.2e-91       4     279 ..     195     466 ..     192     467 .. 0.95

  Alignments for each domain:
  == domain 1  score: 306.4 bits;  conditional E-value: 5e-95
                     -TT--EEEE----SEE---TT-S--EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...------GGG-SEEEE--SSHHHHHHHHHHHHHHHH CS
  HMG_CoA_synt_C   4 drklrashmehayDFykPdlaseYPvvDGklslscYlkaldrcYksyskkvkkitkd...adkeftlddfdyvifhsPfcklvqkslarllynDf 95 
                     +  + +shm+++yDFykP+l seYP vDG ls+s+Y++a+d  Y+ y+ k  k +k    +   f+l d+dy +fhsP+ k+vqk+ arl+ynDf
      CDO73319.1 195 E-PIHGSHMANTYDFYKPKLDSEYPEVDGPLSISAYISAIDASYAAYRAKHAKAKKLagqSGPAFSLADVDYPVFHSPYGKMVQKAHARLVYNDF 288
                     4.689*******************************************9955444333326889******************************* PP

                     HH.S-HHHHHHH-GGGGGGTT--GGGGGT-HHHHHHHHHHHHHHHHHHTGGGGHHHHHH---GGGHHHHHHHHHHHHS-HHHHTT-EEEEEEEET CS
  HMG_CoA_synt_C  96 lanassdkeeevkekleekddlkldesltdkdlekallkiakelfkkkvkpsllvptevGnmYtaslyaalasllskvsadelagkriglfsYGs 190
                     l+n++ +k ++v ++ +   +  ++ +ltdk+lek+++ iak  f+  v++s+ v+ ++GnmYtasly+ laslls v+  el+gkri++f+YGs
      CDO73319.1 289 LSNPNAPKYANVPDRDALL-AQPYKATLTDKNLEKTFIGIAKSEFESTVEKSMRVAWRCGNMYTASLYGGLASLLSTVEPAELRGKRISMFAYGS 382
                     *********9998876555.679************************************************************************ PP

                     TTEEEEEEEEE-S--STTSHHHHHTTTTHHHHHHTSEEE-HHHHHHHHHHHHHHTT--SB---S-GGGS-TT-EEEEEE-TTS-EEEEE CS
  HMG_CoA_synt_C 191 GlaaslfslrvkqdvsedsildiakvldlkkkLdsRkevtPeefeealelrekahlkknfkpqgsidsLaegtyyLeevDdkfRRsYav 279
                     Gla+s+++++vk+d+se     i++++dl  +Ld+ k v  +e+++al lrek h++ +++p+gs d++ +g+yyLe +D k+RR+Ya+
      CDO73319.1 383 GLASSFYTIKVKGDTSE-----IREKMDLLARLDAMKVVPCQEYVDALALREKNHNAGSYTPTGSLDNIWPGAYYLESIDAKYRRFYAR 466
                     ****************9.....*****************************************************************96 PP

>> HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.9   0.1     7e-87   3.1e-83       1     174 []      18     191 ..      18     191 .. 1.00

  Alignments for each domain:
  == domain 1  score: 277.9 bits;  conditional E-value: 7e-87
  HMG_CoA_synt_N   1 rpkdvgilaleiylpaqyvdqaelekfdgveagkytiglgqtrmgfvsdredinslsltvvqkllertkldydaigrlevgtetiidksksvksv 95 
                     rpkdvg+la+e+y+p +++ + ele fd+v +gkytiglgq  m+ ++dredins++lt v  l+e++++d ++igr++vgtetiidksks k+ 
      CDO73319.1  18 RPKDVGVLAMEMYFPRRCISEEELEEFDNVPKGKYTIGLGQKYMACCDDREDINSFALTAVISLIEKYNIDPKSIGRIDVGTETIIDKSKSTKTH 112
                     7********************************************************************************************** PP

  HMG_CoA_synt_N  96 lmqlfeesgntdiegidtlnacyggtaalfnavnwiessawdgryalvvagdiaiydsgnarptggagavalligpdap 174
                     lm++f ++gntdieg+d+ nacyg taalfnavnw+ess+wdgr+a+vv gdiaiy++g+ rptggaga a+ligp+ap
      CDO73319.1 113 LMDFFADAGNTDIEGVDSKNACYGSTAALFNAVNWVESSSWDGRNAIVVGGDIAIYAEGSGRPTGGAGAFAMLIGPNAP 191
                     ******************************************************************************9 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.1e-06     0.023       2      64 ..     129     189 ..     128     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                  EEE-GGGHHHHHHHHHHHHHHTT..S-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEE CS
  ACP_syn_III   2 DlnaaCsgfvyalsvAdaliesg..aakrvLvigaetlskilDwkdrstavlfGDGAgAvvleas 64 
                  D ++aC g ++al +A + +es     ++++v+g+++  +    ++ s   + G GA A++++++
   CDO73319.1 129 DSKNACYGSTAALFNAVNWVESSswDGRNAIVVGGDIAIY----AEGSGRPTGGAGAFAMLIGPN 189
                  889******************997789*********9555....678888888999999999875 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.083   3.7e+02       7      31 ..     259     283 ..     256     301 .. 0.84
   2 ?    8.6   0.0   0.00047       2.1      30      82 ..     331     385 ..     320     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.083
                    -GGG-SEEEE-SSSHHHHHHHHHHH CS
  ACP_syn_III_C   7 tpedidalvphqanlriidavakkl 31 
                    + +d+d+ v+h    ++++++  +l
     CDO73319.1 259 SLADVDYPVFHSPYGKMVQKAHARL 283
                    678****************998887 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00047
                    HHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTT..SS-TT-EEEEEEEETTTE CS
  ACP_syn_III_C  30 klglpeekvvvnldeyGntsaasiplaLdeaveeg..klkpgdlvllvgfGaGlt 82 
                    +++ + ek +    ++Gn+ +as+   L+ ++++      +g+++ +++ G Gl 
     CDO73319.1 331 EFESTVEKSMRVAWRCGNMYTASLYGGLASLLSTVepAELRGKRISMFAYGSGLA 385
                    56677889999999***************99997643455799**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3334.83
//
Query:       CDO73320.1  [L=325]
Description: hypothetical protein BN946_scf185008.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-06   27.8   0.0    0.00033   20.8   0.0    2.3  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.9e-08   0.00033      10      44 ..      52      86 ..      46     109 .. 0.84
   2 !    4.7   0.0    0.0019        34      63      98 ..     151     187 ..     129     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.9e-08
                TS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST CS
         BTB 10 lcDvtlvvgdgkefkahkavLaarSpyFkalftsk 44
                  D++l++ d+  f++h  +La +S++F ++f+  
  CDO73320.1 52 SADIILRASDRVDFRVHSQILAQASSFFATMFSLP 86
                57******************************977 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HH CS
         BTB  63 afealLefiYtgeleit.seenleelLaaadllqipr 98 
                 +++ lL+++Y+  +++t   ++l+  ++aa+++++  
  CDO73320.1 151 TLDLLLRILYPIPMPTTdVPATLVLAMKAAQKYEMAL 187
                 7899******999988876788999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2276.59
//
Query:       CDO73321.1  [L=542]
Description: hypothetical protein BN946_scf185008.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-21   76.6   0.0    3.7e-10   40.0   0.0    2.5  2  BTB       BTB/POZ domain
  ------ inclusion threshold ------
      0.069   13.3   0.0       0.31   11.2   0.0    2.0  2  Skp1_POZ  Skp1 family, tetramerisation domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.1e-14   3.7e-10      10     107 ..      28     134 ..      22     137 .. 0.83
   2 !   33.8   0.0   3.6e-12   3.2e-08      11     104 ..     243     357 ..     235     362 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.1e-14
                 TS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCE..........EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-H CS
         BTB  10 lcDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvs..........eielddvepeafealLefiYtgeleit.seenleelLaaadllqip 97 
                   D+tl++ d+  f++h+avLa +Sp+F ++++     e+s+s          ++ +   ++++++ lL+ +Y+   + + + e ++++L++a +++++
  CDO73321.1  28 SADITLRTSDNVDFHVHRAVLAIASPVFATMLELP-QPERSQSlttsdplarsRV-IVSEDSKTLDVLLRLCYPVAKTQQrDMEGIASVLEIAMKYEME 124
                 68*********************************.4555555557788888544.6788999***********98888777889*************9 PP

                 HHHHHHHHHH CS
         BTB  98 rlkkaceefl 107
                   +  +++ l
  CDO73321.1 125 WPISFLSKEL 134
                 7776666655 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 3.6e-12
                 S-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.........TTTTCCCE...............EEEETTSGHHHHHHHHHHHHHSEEEC-....CG CS
         BTB  11 cDvtlvvgdgkefkahkavLaarSpyFkalftsk.........eieessvs...............eielddvepeafealLefiYtgeleit....se 81 
                  Dv+++ +dg ef+ah+a+L++ Sp +k+ f ++                +               +  +   +++a++ lL+++Y  el+ t    + 
  CDO73321.1 243 HDVICRSRDGVEFRAHRAILSMQSPALKRSFFGGetptsdsteA------EslsgvdeaipkpptlQTIVLGLSHRALALLLNICYG-ELDETvttpEP 334
                 7*********************************8877665441......034456677777788866689***************5.45555566677 PP

                 GGHHHHHHHHHHHT-HHHHHHHH CS
         BTB  82 enleelLaaadllqiprlkkace 104
                   l+el+a+ + ++++++ ++++
  CDO73321.1 335 PLLAELMAVSEEYEMKQVLAVVK 357
                 8899999999******9988765 PP

>> Skp1_POZ  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.31       3      31 ..      31      60 ..      29      69 .. 0.89
   2 ?   -1.7   0.0      0.37   3.3e+03       6      21 ..     248     263 ..     245     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
                EEEEETTSCEEEEEHHH.HTTSHHHHHHHH CS
    Skp1_POZ  3 ivLqSsDgesfeveeav.akkSktikhmie 31
                i+L +sD+  f v +av a  S+++++m+e
  CDO73321.1 31 ITLRTSDNVDFHVHRAVlAIASPVFATMLE 60
                99**************94568********9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.37
                 EETTSCEEEEEHHHHT CS
    Skp1_POZ   6 qSsDgesfeveeavak 21 
                  S Dg +f + +a++ 
  CDO73321.1 248 RSRDGVEFRAHRAILS 263
                 699*******999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3933.85
//
Query:       CDO73322.1  [L=858]
Description: hypothetical protein BN946_scf185008.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-69  233.9  16.7    8.6e-54  182.8   5.5    2.1  2  Solute_trans_a  Organic solute transporter Ostalpha


Domain annotation for each model (and alignments):
>> Solute_trans_a  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   2.8   6.6e-20   1.2e-15       2      58 ..      36      92 ..      35      97 .. 0.96
   2 !  182.8   5.5   4.8e-58   8.6e-54     101     265 .]     108     275 ..      92     275 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 6.6e-20
  Solute_trans_a  2 liiagvfallallislililqhlrhytkpseQrkiirIllmvpiyavsSllsllfps 58
                    +i++ +f+++a+ +s++li +h+r+yt++ eQr+i+rIl+mvp+ya +Sl s+++++
      CDO73322.1 36 WIVSSAFTMVAIGVSFWLIDKHIRWYTNKYEQRYIVRILFMVPLYAAISLASYFWWN 92
                    99***************************************************9986 PP

  == domain 2  score: 182.8 bits;  conditional E-value: 4.8e-58
  Solute_trans_a 101 k.kk.llplnlclekvkltlkflkrcklgvlQyvvvkpllaivslileslgvyc.esfspkfaylyltiiynvsvtlAlyalllfykalkkeLkp 192
                       +k ++pl +++ k + +l+fl+++k+gvlQy+vv+p+++++++il+++g yc +s+sp ++++y+t++ +vsv++A+y+l+++y+ +k eL+p
      CDO73322.1 108 HaQKwMFPLGFVRWKPEDGLYFLQLMKWGVLQYCVVRPTTTLAAVILDYIGLYCeDSWSPGWGHIYITLVVSVSVSIAMYCLIQIYMTVKVELAP 202
                     2233578888877777777***********************************669************************************** PP

  Solute_trans_a 193 fkpvlKflciklvvfltfwQglvlsilvkvgviketkklsaediaagiqnllicvEMvlfailhlyaFpykeY 265
                      kp+lK+++ik+vvfltfwQ+++ls+l+ +gv+k+t++++a++i++gi +++ ++EM++fa+lh+ aF+yk+Y
      CDO73322.1 203 QKPLLKLFAIKAVVFLTFWQATFLSVLTLFGVVKDTQYMTADNINIGIGAIVETFEMACFALLHIKAFSYKPY 275
                     ************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6167.54
//
Query:       CDO73323.1  [L=872]
Description: hypothetical protein BN946_scf185008.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-13   48.2   0.4    9.4e-07   27.8   0.0    3.3  3  An_peroxidase  Animal haem peroxidase


Domain annotation for each model (and alignments):
>> An_peroxidase  Animal haem peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   1.5e-05      0.27       1      27 [.     113     139 ..     113     144 .. 0.91
   2 !    7.8   0.0   5.9e-05       1.1     145     171 ..     143     169 ..     137     174 .. 0.88
   3 !   27.8   0.0   5.2e-11   9.4e-07     222     288 ..     175     261 ..     170     378 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 1.5e-05
                    S--TTSTTSSTTSTTTT-TTEE-BBSS CS
  An_peroxidase   1 yrsidGscNnlknpewGsagtpfkRll 27 
                    yr +dGs Nn   p++G+agtp+ R  
     CDO73323.1 113 YRAADGSNNNPSAPNLGKAGTPVFRTS 139
                    8*********************99976 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 5.9e-05
                    EEEESS-SSSSSHHHH-SSHHHHHHHB CS
  An_peroxidase 145 eqlnqvTsflDasqvYGsseeearkLR 171
                      +n  +s++D   +YG+++e ++k+R
     CDO73323.1 143 VSINDTSSYIDLAPLYGHTQEAQDKIR 169
                    579**********************99 PP

  == domain 3  score: 27.8 bits;  conditional E-value: 5.2e-11
                    HHHHHHHHHHHHHHHHHHHH.....................-TTS-HHHHHHHHHHHHHHHHHHHHHCTHHHHHCSSHHHHHH.TT-H CS
  An_peroxidase 222 alhtlflReHNriAeeLkkl.....................nphwsdeelfqeARkiviAliqkItynewLpalLgkenankyglllk 288
                    +l +lf R+HN+iA++L +l                     +   ++e++fq+AR+i++  +++++++++  a+Lg    +  + +l+
     CDO73323.1 175 VLLVLFNRNHNYIAHKLLELnergtyvdpnsiptsdparadKLLAQEEDIFQTARLINCGWFASVVFSDYFSAILGL-VREGSNWALD 261
                    67799*************99999************99999878889999***************************5.3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6437.59
//
Query:       CDO73324.1  [L=328]
Description: hypothetical protein BN946_scf185008.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-32  112.3   0.1    9.7e-32  110.5   0.1    1.7  1  Coatomer_E  Coatomer epsilon subunit
     0.0032   17.4   3.4         11    6.4   0.0    4.6  4  TPR_2       Tetratricopeptide repeat
     0.0033   17.5   0.4     0.0033   17.5   0.4    3.8  5  TPR_9       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.041   14.1   0.5        1.6    9.1   0.0    3.1  3  TPR_8       Tetratricopeptide repeat
        1.9    9.1  16.2        5.6    7.6   0.3    5.2  5  TPR_19      Tetratricopeptide repeat
        6.8    7.6  11.6         71    4.4   0.0    5.3  6  TPR_6       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.1   3.2e-35   9.7e-32       4     289 ..       5     320 ..       2     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 3.2e-35
                 TTHHHHHHHHTT-HHHHHHHHHS---SHHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS.-HHHHHHHHHHHHHH......-STTHHHHHHHHHHHHHS CS
  Coatomer_E   4 eLfdvrnefYlGaYqkaineadvaslseeekeerdvylyrsylAlgsaqiviseIkesa.atelqAvrllaeyln......spsrkeeilaelkeelad 95 
                 eL++v+++f lGaY++++    +   +  + + + vy +r+ lAl++   ++  I++++    l A   la y++      ++++++++l++l++   +
  CDO73324.1   5 ELYHVKQQFTLGAYKSLVS-LSLPDPDSPDYVPTLVYQARAHLALDDPSAALALIPSDTeNVALRAAASLARYVTaeadhaNEEARDAALEQLRDLCVE 102
                 8*****************5.66777777788999*********************999889999999999998762211114568999******99886 PP

                 ----S-H.......HHHHHHHHHHHHTT-HHHHHHHHTT-...-SHHH...........HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHH CS
  Coatomer_E  96 seiesne.......vlrllaaivflkegdfddalkllkks...enLea...........vAlkvqillklhrvdlAekelkkmqdidedatltQLAqaw 173
                  e++ ++       ++r+l+ai f ++g+ ++al++l ++    nLea           vA  vqi+l ++r+dlA+ke  +++ ++ed+ l+Q  +a 
  CDO73324.1 103 VEGDDEDvsdwekgTVRVLSAIAFARAGEIEEALETLGAGadtHNLEAiadvvpvfshsVAYIVQIYLSINRADLARKEFERAKRWAEDDLLLQHIEAS 201
                 6554443112222379*********************988755789982222222222245779*********************************** PP

                 HHHHH-TTHHHHHHHHHHH.HHHHS---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-..TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT- CS
  Coatomer_E 174 vklavggekiqdAyyifqe.lsekykstplllngkAvvslllgryeeAeslLkeaLdkd..akdeetLiNlvvaaqhlgkdaevsernlsqlklshpeh 269
                 + l++g + + dA   f+e l++   + p ll+ + v+ ll g+ ++A+s L+ea  +     d+etL   +vaa +    +   ++ +s l ++hp+ 
  CDO73324.1 202 IGLVTGRDAYSDAQAFFSEqLANPSLTSPRLLTARGVARLLRGELAAAKSDLEEAAVQMggRPDAETLGAQTVAAGLGAAKTAEADQLFSRLSTEHPSF 300
                 *****************875788878889*************************987752256999*******999888888888999*********** PP

                 HHHHHHHHHHHHHHHHHHHH CS
  Coatomer_E 270 klvkdlnekeaeFdrlvlqf 289
                 +lv dl+ k+  Fd l+++f
  CDO73324.1 301 PLVLDLERKAYLFDELATKF 320
                 ****************9987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.085   2.6e+02       4      22 ..      38      56 ..      36      58 .. 0.88
   2 ?    2.1   0.0     0.088   2.6e+02       8      22 ..     123     137 ..     121     141 .. 0.86
   3 ?    3.6   0.2      0.03        89      10      32 ..     168     190 ..     167     192 .. 0.80
   4 !    6.4   0.0    0.0036        11       2      28 ..     231     257 ..     230     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.085
       TPR_2  4 lynlGlayyklgdyeeAle 22
                l ++++a+++l+d+  Al+
  CDO73324.1 38 LVYQARAHLALDDPSAALA 56
                6789**********99997 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.088
       TPR_2   8 GlayyklgdyeeAle 22 
                 + a +++g+ eeAle
  CDO73324.1 123 AIAFARAGEIEEALE 137
                 678999*******98 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.03
       TPR_2  10 ayyklgdyeeAleafekAleldP 32 
                 +y+  ++ + A++ fe+A + ++
  CDO73324.1 168 IYLSINRADLARKEFERAKRWAE 190
                 7888889999*******987665 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0036
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 ++l ++G a + +g+++ A+ ++e+A 
  CDO73324.1 231 RLLTARGVARLLRGELAAAKSDLEEAA 257
                 67889********************95 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   4.7e+03      37      49 ..      43      55 ..      38      61 .. 0.64
   2 ?    1.0   1.8      0.16   4.8e+02      47      72 ..      68      96 ..      62      99 .. 0.70
   3 ?   -1.1   0.1      0.73   2.2e+03      36      52 ..     123     139 ..     121     145 .. 0.84
   4 ?   -2.7   0.1       2.3   6.9e+03       9      27 ..     173     191 ..     167     196 .. 0.48
   5 !   17.5   0.4   1.1e-06    0.0033      28      71 ..     229     272 ..     226     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
       TPR_9 37 lllaqlGclsaAl 49
                +++  l+++saAl
  CDO73324.1 43 RAHLALDDPSAAL 55
                4555555566555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.16
       TPR_9 47 aAladLeayl...alap..dapdaeairaqL 72
                 A+a L +y+   a  +  + ++++a+ +qL
  CDO73324.1 68 RAAASLARYVtaeA--DhaNEEARDAALEQL 96
                69999*****7541..244666666666666 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.73
       TPR_9  36 GlllaqlGclsaAladL 52 
                 +++ a+ G +++Al+ L
  CDO73324.1 123 AIAFARAGEIEEALETL 139
                 78899999999999877 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.3
       TPR_9   9 edweralavverllllaPd 27 
                 ++++ a +  er   +a d
  CDO73324.1 173 NRADLARKEFERAKRWAED 191
                 4444444444444444444 PP

  == domain 5  score: 17.5 bits;  conditional E-value: 1.1e-06
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaq 71 
                 +p+++  RG+++  +G l+aA  dLe ++ + + +pdae++ aq
  CDO73324.1 229 SPRLLTARGVARLLRGELAAAKSDLEEAAVQMGGRPDAETLGAQ 272
                 69999**********************************98765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.4     1e+04      14      23 ..     129     138 ..     123     139 .. 0.73
   2 ?    9.1   0.0   0.00053       1.6       9      34 .]     167     192 ..     165     192 .. 0.92
   3 ?    1.6   0.0      0.14   4.3e+02       6      27 ..     235     256 ..     230     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.4
                 TT-HHHHHHH CS
       TPR_8  14 lgdyeeAkey 23 
                  g++eeA e+
  CDO73324.1 129 AGEIEEALET 138
                 5788888775 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00053
                 HHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   9 siylklgdyeeAkeyyekaleldpdn 34 
                 +iyl+ ++ + A + +e+a ++++d+
  CDO73324.1 167 QIYLSINRADLARKEFERAKRWAEDD 192
                 8*******************999875 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.14
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyeka 27 
                   g + l  g++ +Ak+ +e+a
  CDO73324.1 235 ARGVARLLRGELAAAKSDLEEA 256
                 5666666779999999999998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.059   1.8e+02      21      47 ..      31      57 ..      16      74 .. 0.87
   2 ?    7.6   0.3    0.0019       5.6      26      54 ..     117     145 ..      84     155 .. 0.81
   3 ?    5.2   0.1      0.01        31      30      58 ..     164     192 ..     146     202 .. 0.83
   4 ?    0.7   0.7      0.26   7.7e+02       3      17 ..     242     256 ..     207     273 .. 0.56
   5 ?    1.3   0.7      0.17   5.1e+02       4      56 ..     243     298 ..     240     310 .. 0.50

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.059
      TPR_19 21 dpknaearllLAeallalgqldeAeal 47
                +p++   + + A+a+lal ++ +A al
  CDO73324.1 31 SPDYVPTLVYQARAHLALDDPSAALAL 57
                78888888888***********99987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0019
      TPR_19  26 earllLAeallalgqldeAealLdalpee 54 
                  +r l A+a   +g+++eA ++L a  + 
  CDO73324.1 117 TVRVLSAIAFARAGEIEEALETLGAGADT 145
                 5778889****************887766 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.01
      TPR_19  30 lLAeallalgqldeAealLdalpeedpdd 58 
                 + ++++l+ ++ d A++  +++ +++ dd
  CDO73324.1 164 YIVQIYLSINRADLARKEFERAKRWAEDD 192
                 4689*******************999996 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.26
      TPR_19   3 aegdyaeAlalleqa 17 
                  +g +a+A + le+a
  CDO73324.1 242 LRGELAAAKSDLEEA 256
                 234444444444444 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.17
      TPR_19   4 egdyaeAlalleqalqe...dpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +g +a+A + le+a  +    p+ + + ++ + a l +  ++eA +l ++l  e p
  CDO73324.1 243 RGELAAAKSDLEEAAVQmggRPDAETLGAQTVAAGLGAAKTAEADQLFSRLSTEHP 298
                 67777777777776433122222222222334444444455555555555555555 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.081   2.4e+02       3      21 ..      38      56 ..      37      58 .. 0.88
   2 ?   -1.5   0.2       1.8   5.3e+03      17      27 ..      86      97 ..      68      99 .. 0.68
   3 ?    3.0   0.0     0.065   1.9e+02       6      23 ..     122     139 ..     118     141 .. 0.85
   4 ?    0.1   0.1      0.54   1.6e+03       8      26 ..     167     185 ..     163     187 .. 0.80
   5 ?   -1.3   0.1       1.5   4.5e+03       9      25 ..     239     255 ..     236     259 .. 0.53
   6 ?    4.4   0.0     0.024        71      15      31 ..     282     298 ..     274     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.081
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  3 lyklalsyrklgdtdkAle 21
                l ++a+++++l+d+++Al+
  CDO73324.1 38 LVYQARAHLALDDPSAALA 56
                6799*******9*999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                HHHHH.HHHHHH CS
       TPR_6 17 dkAle.alerli 27
                ++A++ ale+l+
  CDO73324.1 86 EEARDaALEQLR 97
                455555666665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.065
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleal 23 
                  a ++ ++g+ ++Ale+l
  CDO73324.1 122 SAIAFARAGEIEEALETL 139
                 688999999*******98 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   8 lsyrklgdtdkAlealerl 26 
                 + y++ +++d A++ +er 
  CDO73324.1 167 QIYLSINRADLARKEFERA 185
                 5678867999****99996 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealer 25 
                 +++  g+ ++A+  le+
  CDO73324.1 239 ARLLRGELAAAKSDLEE 255
                 44444455666555544 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHH-T CS
       TPR_6  15 dtdkAlealerlikeYP 31 
                 +t++A +++ rl +e+P
  CDO73324.1 282 KTAEADQLFSRLSTEHP 298
                 899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2391.43
//
Query:       CDO73325.1  [L=326]
Description: hypothetical protein BN946_scf185008.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.27   11.3   3.6       0.55   10.3   3.6    1.5  1  DZR       Double zinc ribbon


Domain annotation for each model (and alignments):
>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.6   3.1e-05      0.55       9      37 ..      12      43 ..       6      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.1e-05
         DZR  9 ppdarfCseCgtklkavaa...edrCpsCgek 37
                ++ +r C++C ++l+  ++   +++C  C +k
  CDO73325.1 12 SQTKRLCPRCSARLPVDQDgavHKHCEDCRRK 43
                57789*********8555599********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2283.46
//
Query:       CDO73326.1  [L=118]
Description: hypothetical protein BN946_scf185008.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 874.53
//
Query:       CDO73327.1  [L=558]
Description: hypothetical protein BN946_scf185008.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-32  110.6   0.0    1.8e-31  109.5   0.0    1.5  1  Rad9      Rad9


Domain annotation for each model (and alignments):
>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0     1e-35   1.8e-31       2     248 ..      14     298 ..      13     300 .. 0.85

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 1e-35
        Rad9   2 aralqclsrigdelyleisedglelrtvnssrSayalvtlkksfFdky........ekevseqirckilvKsvlsvfrslsakektvekvkisidekks 92 
                 +ral cls++g+el + + ++ ++l+t n ++Say+ ++++ksfF++y        ++   + ++ +i +K++l++++ + + ek+ ek++  i+++++
  CDO73327.1  14 TRALACLSKFGEELIIIAAPETFALSTTNQAQSAYGRFKYAKSFFSRYrvgshpagDELDVPPLTGQIVIKPLLQILKHK-TIEKSCEKCEFVISDSAT 111
                 59*************************************************999987777778999***********855.59***********77777 PP

        Rad9  93 rlivqllC...khgvkk....thkisledsesl.kavfdkettpsklriksrvLsdllehfsssleeiti.....elakervllksyeeeekdn..... 173
                 +   ql     +h++      th++ l+  ++l +  f  +   s ++i ++ L+ +lehf+      t      ++   +v l+s e  + ++     
  CDO73327.1 112 Q-APQLETeedDHDTLEsrliTHRLPLNAANNLmSPTFPDAALESRVTIGPKALRHMLEHFPFGKGPKTDpqliwNFRDSEVQLRSLESAVDAKgkelq 209
                 6.3344441114555432333899999999998899999999*******************86544444334444999999999999887766677889 PP

        Rad9 174 ..............kkalstelsideeeFeqyqlaed.veitlslkefkallvfaeslsaslslafdeaGkPllltikklslleakfila 248
                               +++lstel+i+ +eF++y++ ++ + i + lkef a+++fae+ ++sl+++f ++  Pl + +    + +  f++a
  CDO73327.1 210 lffdhslgsrflvgRAQLSTELTISADEFDEYDVLNTpMTIAFHLKEFTATIAFAEASQLSLEIKFTDPEAPLYIDVGG-DMADTLFVIA 298
                 999999999***999******************877779*************************************996.6788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4288.05
//
Query:       CDO73328.1  [L=786]
Description: hypothetical protein BN946_scf185008.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-75  251.4   0.0    1.3e-74  250.9   0.0    1.2  1  Pkinase         Protein kinase domain
    6.1e-51  173.2   0.0    9.7e-51  172.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    5.5e-23   81.1   0.1    1.2e-22   80.0   0.1    1.7  1  PBD             P21-Rho-binding domain
    1.4e-05   24.1   0.1    2.4e-05   23.3   0.1    1.5  1  Pkinase_fungal  Fungal protein kinase
    0.00069   19.0   0.0     0.0012   18.2   0.0    1.4  1  Kinase-like     Kinase-like
     0.0048   16.3   0.1      0.011   15.2   0.1    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.014   15.3   0.3       0.26   11.2   0.3    2.4  2  APH             Phosphotransferase enzyme family
      0.059   13.0   0.0        0.1   12.2   0.0    1.4  1  DSHCT           DSHCT (NUC185) domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.9   0.0     6e-78   1.3e-74       1     264 []     512     763 ..     512     763 .. 0.94

  Alignments for each domain:
  == domain 1  score: 250.9 bits;  conditional E-value: 6e-78
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y++l k+G G++G Vy a++  t+  vA+K+++ +k+ kk+   +++Ei +++ ++hpniv+++++f +k+el++v+ey+egg+l+d+++    ++e +
  CDO73328.1 512 YRNLVKIGAGASGGVYTAYQVGTNMSVAIKQMDLDKQPKKDL--IINEILVMRASRHPNIVNYIDSFLHKNELWVVMEYMEGGSLTDVVT-ANLMTEGQ 607
                 67789******************************9999776..*********************************************8.588***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 +  + +++++gle+lH++g+iHrD+K++N+L++ +g++K+tDFG+++++++ ++  t++vgt++++APEv++++ey++kvD+WslG++ +e++ g+pp+
  CDO73328.1 608 IAAVSRETAQGLEHLHRHGVIHRDIKSDNVLLSMNGDIKLTDFGFCAQISEANSkRTTMVGTPYWMAPEVVTRKEYGPKVDIWSLGIMAIEMIEGEPPY 706
                 *************************************************9988879******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  +++  +          +++ i ++ + ++++++ +s+ ++d l k+l++d +kR+ta+ellqhp++
  CDO73328.1 707 LNQNPLK----------ALYLIATNGTPQIANPEALSPVFRDYLAKCLEVDAEKRPTASELLQHPFF 763
                 *444433..........45556666789999***********************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   4.3e-54   9.7e-51       6     257 ..     517     759 ..     512     760 .. 0.93

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 4.3e-54
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlk 103
                  k+G+Ga G V+ ++       ++++Va+K+++ +++ + k+ +++e+ +m++ +hpniv+++   +++++l++v+ey++gG+L + ++++    +t  
   CDO73328.1 517 KIGAGASGGVYTAYQV----GTNMSVAIKQMDLDKQPK-KDLIINEILVMRASRHPNIVNYIDSFLHKNELWVVMEYMEGGSLTDVVTAN---LMTEG 606
                  89***********999....99*********7766666.88999********************************************99...9999* PP

                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftl 201
                  ++  ++ + A+G+e+L+++ ++Hrd+ + NvLls n  +k++DfG + +i  ++  +k+++      WmapE++++k++  k D+Ws G++ +E+++ 
   CDO73328.1 607 QIAAVSRETAQGLEHLHRHGVIHRDIKSDNVLLSMNGDIKLTDFGFCAQI--SEANSKRTTMVGTPYWMAPEVVTRKEYGPKVDIWSLGIMAIEMIE- 701
                  **************************************************..556667777778889*****************************9. PP

                  SSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 202 gespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  ge py + ++ ++l  +  +   ++++pe  ++ + + + kc+e d+e+Rpt sel++
   CDO73328.1 702 GEPPYLNQNPLKALYLIatNGTPQIANPEALSPVFRDYLAKCLEVDAEKRPTASELLQ 759
                  ********999988888533445799***************************99976 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   5.6e-26   1.2e-22       1      59 []     231     289 ..     231     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 5.6e-26
                 -B---EEEEEEEEEEEETTTTEEES--CCHCCCHHHT.TTSXXXBEXXXXXXXXXXXXX CS
         PBD   1 eIStPtnfkHtvHVGwdgdsgnftglPpewkkllkssgItedelkenpkavlsvdkfrs 59 
                 eIStP++++H +HVG++  +g+ftglP+ew++ll++sgI+++++++np+av++++kf++
  CDO73328.1 231 EISTPYDPVHLTHVGFNTSTGEFTGLPKEWQQLLQESGISKEQQEKNPQAVMEIVKFYQ 289
                 7********************************************************96 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.1e-08   2.4e-05     310     392 ..     610     684 ..     435     692 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.1e-08
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHs 392
                     ++ r+  +g++ L+   g++HrDi  +N+l+       +    L D+ +  ++s+  ++s++ + +GT+++ma ev+  +e  
      CDO73328.1 610 AVSRETAQGLEHLH-RHGVIHRDIKSDNVLLS-----MNGDIKLTDFGFCAQISE--ANSKRTTMVGTPYWMAPEVVTRKEYG 684
                     566777899*****.9****************.....677889***********6..6667789************9876655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.3e-07    0.0012     157     243 ..     619     699 ..     538     712 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.3e-07
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragt..kvvlsevekg.faPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                    +L+ +g++h ++++dn+ll  +g ++l++f+   +  +  + +  +v    +  pE++ + + y          k+d W lG+ +  +
   CDO73328.1 619 LEHLHRHGVIHRDIKSDNVLLSMNGDIKLTDFGFCAQISEanSKRTTMVGTPyWMAPEVVTR-KEY--------GPKVDIWSLGIMAIEM 699
                  469****************************9866655440033335665441467788777.334........5589999999987665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.7e-06     0.011      94     176 ..     584     660 ..     578     665 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.7e-06
         Kdo  94 llterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlrad 176
                 +++e +eg  +L+d+++   + + e   +a  +++++  + lhr gv H+d+   n+ll  ++     i l D+  +++ + a+
  CDO73328.1 584 VVMEYMEG-GSLTDVVTA--NlMTEGQIAAVSRETAQGLEHLHRHGVIHRDIKSDNVLLSMNG----DIKLTDFGFCAQISEAN 660
                 57788887.478888885..436666777888889999999*********************9....89999998888877654 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0083        19      55     108 ..     567     625 ..     555     626 .. 0.86
   2 ?   11.2   0.3   0.00011      0.26     152     195 ..     614     652 ..     601     655 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0083
                 -B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  55 Pevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpellealgeflaalhqv 108
                 P ++ +  +  ++  l++++ey++g sl++      +++ q+ ++ ++ ++ l +lh++
  CDO73328.1 567 PNIVNYIDSFLHKNELWVVMEYMEGGSLTDvvtanLMTEGQIAAVSRETAQGLEHLHRH 625
                 5555665666677779*****************9999999****************997 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfed 195
                   a+ +++l+   +++++H+D++++N+l+   +d +   + Df++
  CDO73328.1 614 ETAQGLEHLH---RHGVIHRDIKSDNVLLSmNGDIK---LTDFGF 652
                 3444455666...9***************9433333...566665 PP

>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.6e-05       0.1      74     136 ..     563     624 ..     473     637 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.6e-05
       DSHCT  74 keiaeriakvsvesrl.dlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlak 136
                 + ++ +i ++ ++s + + +  +vv ++++g s+++++++  ++eG+i  + r + + l++l++
  CDO73328.1 563 ASRHPNIVNY-IDS-FlHKNELWVVMEYMEGGSLTDVVTANLMTEGQIAAVSRETAQGLEHLHR 624
                 3334444444.666.44888999******************************99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 5227.97
//
Query:       CDO73329.1  [L=612]
Description: hypothetical protein BN946_scf185008.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-62  210.9   0.6    1.2e-46  159.5   0.1    2.2  2  PIF1             PIF1-like helicase
    2.8e-22   79.4   0.0    4.7e-22   78.7   0.0    1.3  1  AAA_30           AAA domain
    2.2e-11   44.3   0.0    4.1e-11   43.4   0.0    1.5  1  AAA_19           AAA domain
    1.2e-06   26.8   0.2    4.5e-05   21.6   0.0    2.2  2  Herpes_Helicase  Helicase
    0.00019   21.3   0.3       0.28   10.9   0.1    3.1  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00021   21.6   0.0    0.00064   20.0   0.0    1.7  1  AAA_22           AAA domain
    0.00024   20.8   0.0    0.00071   19.4   0.0    1.8  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0061   16.9   0.3      0.017   15.5   0.1    1.9  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.057   13.2   0.0    1.8  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
      0.024   14.5   0.0      0.046   13.6   0.0    1.4  1  NACHT            NACHT domain
       0.04   14.3   0.1        0.1   13.0   0.1    1.6  1  AAA              ATPase family associated with various cellul
      0.054   13.5   0.0        0.2   11.7   0.0    1.9  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.058   13.3   0.0       0.12   12.2   0.0    1.5  1  DUF5605          Domain of unknown function (DUF5605)
      0.058   12.6   0.0       0.12   11.6   0.0    1.6  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.067   12.2   0.1       0.14   11.1   0.1    1.5  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.07   12.6   0.1       0.19   11.3   0.0    1.7  2  AAA_7            P-loop containing dynein motor region
       0.11   12.3   0.9        1.4    8.8   0.9    2.2  1  ATPase_2         ATPase domain predominantly from Archaea
       0.14   11.3   0.0       0.29   10.3   0.0    1.5  1  NB-ARC           NB-ARC domain
       0.16   12.2   0.2       0.38   11.0   0.0    1.7  1  Muraidase        N-acetylmuramidase
       0.17   12.0   0.0        1.1    9.4   0.0    2.2  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
       0.24   11.9   1.0       0.98    9.9   0.1    2.4  2  ABC_tran         ABC transporter
        5.6    7.0   5.6         13    5.9   0.6    2.6  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.1   1.5e-49   1.2e-46       2     220 ..     155     356 ..     154     370 .. 0.92
   2 !   49.9   0.1   3.3e-16   2.7e-13     268     363 ..     378     460 ..     361     461 .. 0.90

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 1.5e-49
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC....TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH..HHHTSC CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs....egkivlavAssGvAalllegGrtahsrfkiplekdeestc..kikrgs 94 
                 L++eQ ++++ +        g+++F+tGs+G+gK+ l+++++k+lr+    + + v+++As+G+Aa+++ gG t+hs+++i+l++++++++  kik+++
  CDO73329.1 155 LSQEQTHILRLV------GAGQSLFYTGSAGAGKSVLLREIIKSLRKryqkSPDAVAVTASTGIAACNI-GGVTIHSFAGIGLGIESAEQLanKIKKNR 246
                 889999999999......99**************************944333457**************.*****************9999999***** PP

                 CCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH.--.EEEE-S-STTT CS
        PIF1  95 klaellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWke.vk.vlkLtknmRll 191
                 k + ++ +t+++i+DE++mv+ ++f++l r+ + i+k+    +pFGG++vv+ GDf+Q++Pv+ kg  + ++a+   e ++W + +k +++Ltk++R++
  CDO73329.1 247 KATTRWLRTKVLIIDEVSMVDGDLFDKLARIGSIIRKR---PEPFGGIQVVVTGDFFQLPPVS-KGMNSVKFAF---EAEMWPQtIKkTFNLTKVFRQR 338
                 *******************************9999997...67*******************9.8999999999...99***987777*********** PP

                 T...........HHHHHHHHHHHCT---C CS
        PIF1 192 sesldetekkelkeFskwllkigdGkine 220
                 +            eF ++l++++ G+++ 
  CDO73329.1 339 DP-----------EFVDMLNEMRFGRLSP 356
                 95...........8999999999998875 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 3.3e-16
                 EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1 268 ailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363
                 ++l p++edv++ N  ++s ++g+e+ y+++D              + + +  +++ an++++++L Lk G++vml++N+d +  L+NGt +++  
  CDO73329.1 378 TELFPRREDVERSNTVRMSSINGKEQVYTAYDG-----------GSIQDMQQREKMLANFMAPKRLVLKEGSQVMLIKNMDDT--LVNGTMGKILG 460
                 789******************************...........33445566889****************************..*****999875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   5.7e-25   4.7e-22       2     181 ..     155     362 ..     154     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 5.7e-25
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g...grviglAptgkaAkvLa.......e..elgi.eastiakllkrlk.grar 85 
                 l++eQ ++++ + +++    + tG AG+GK+ +l+++ + ++++ +     v++ A+tg aA +++       +  +lgi  a+ +a+ +k+++ +++r
  CDO73329.1 155 LSQEQTHILRLVGAGQ--SLFYTGSAGAGKSVLLREIIKSLRKRyQkspDAVAVTASTGIAACNIGgvtihsfAgiGLGIeSAEQLANKIKKNRkATTR 251
                 7899999998665555..799***********9998866665553355599***************555555433345556778888888888787788 PP

      AAA_30  86 lepgtllivDEagmvdtkqlaallk...aaeka.....gakvilvGDerQlasVeaGgvl.rdlvea.....agigtaeLtevvRqkeseeraaalalr 170
                 + + ++li+DE++mvd + +++l++   +++k+     g++v++ GD  Ql++V++G    +  +ea     +  +t +Lt+v+Rq+++e+ ++ +++r
  CDO73329.1 252 WLRTKVLIIDEVSMVDGDLFDKLARigsIIRKRpepfgGIQVVVTGDFFQLPPVSKGMNSvKFAFEAemwpqTIKKTFNLTKVFRQRDPEFVDMLNEMR 350
                 8899***********876666665522167777899989*****************97540444444444423449*********************** PP

      AAA_30 171 egdae.ealeal 181
                  g+ + + ++++
  CDO73329.1 351 FGRLSpKSIAKF 362
                 **9887555444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     5e-14   4.1e-11      11     144 ..     170     305 ..     159     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 5e-14
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal..ldfddlltealelle.eaeeekklqeeell 106
                 + l+ t+ +G GK+ +l++i++ l ++ + +p+ +++ a tg Aa ++   +         iH++a   l++++ ++ a ++ + +++ ++   ++++l
  CDO73329.1 170 QSLFYTGSAGAGKSVLLREIIKSLRKRYQKSPDAVAVTASTGIAACNIGGVT---------IHSFAGigLGIESAEQLANKI-KkNRKATTRWLRTKVL 258
                 567789******************************************9766.........666655335555555444444.34444444444999** PP

      AAA_19 107 ivDEfqdvd.elqyrLlkallgekkk........lllvGDpdQliyv 144
                 i+DE+++vd +l  +L +     +k+        +++ GD  Ql++v
  CDO73329.1 259 IIDEVSMVDgDLFDKLARIGSIIRKRpepfggiqVVVTGDFFQLPPV 305
                 *********99999997653333333346788778999999999887 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.029        23      62      98 ..     172     217 ..     152     226 .. 0.76
   2 !   21.6   0.0   5.5e-08   4.5e-05     733     785 ..     543     594 ..     537     606 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.029
  Herpes_Helicase  62 ylitGtAGaGkstsiqalaenl........dCl.itgatvvAaqnl 98 
                      +  tG+AGaGks  +  + ++l        d + +t++t +Aa n+
       CDO73329.1 172 LFYTGSAGAGKSVLLREIIKSLrkryqkspDAVaVTASTGIAACNI 217
                      667*********8766665555333344344444999999999997 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 5.5e-08
  Herpes_Helicase 733 amtiaksqGlslekvAicFgnhknlklssvYvalsRatdsefl.vmdvnPLrer 785
                      am i ksqG  le+v ++ ++     + + YvalsRat+ + l v++ +P + +
       CDO73329.1 543 AMSIHKSQGQTLERVKVDLAKV--FEKGQAYVALSRATSLDGLqVLNFDPSKVQ 594
                      9*****************9976..99*************988745788887765 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00035      0.28       4      75 ..     175     267 ..     172     337 .. 0.76
   2 !    6.9   0.0    0.0058       4.7     185     228 ..     543     579 ..     525     580 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
  Viral_helicase1   4 hGvpGcGKStlirkllrtsliltvnrptaelltegk.....................pklpnlsvrtvdsflmalvkstkgkililDEylllh 75 
                       G +G+GKS l+r+++++ ++  + +p a+++t++                       ++  +  + +++  +a ++  + k+li+DE  +++
       CDO73329.1 175 TGSAGAGKSVLLREIIKSLRKRYQKSPDAVAVTASTgiaacniggvtihsfagiglgIESAEQLANKIKKNRKATTRWLRTKVLIIDEVSMVD 267
                      699*************99866667777788888888877777777777777777776333333334455555555555667777777777776 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0058
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrk 228
                      ++  h  qG+t ++V + l k  +       + + +vAl+R+++
       CDO73329.1 543 AMSIHKSQGQTLERVKVDLAKVFE-------KGQAYVALSRATS 579
                      57889************9996653.......5678*******97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.8e-07   0.00064       6     117 ..     170     279 ..     167     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.8e-07
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelkaerlsseellealeqalrarav...ielliiD 98 
                 ++l+ tG +G+GK++llr++ ++l ++++   ++p+ v vt++ +    +   +  + +  +gl+ ++     e+l +++ ++ +a+ +   +++liiD
  CDO73329.1 170 QSLFYTGSAGAGKSVLLREIIKSLRKRYQ---KSPDAVAVTASTGIaacNIGGVTIHSFAGIGLGIES----AEQLANKIKKNRKATTRwlrTKVLIID 261
                 577889******************76655...477777777776664447777777777777765555....9999999999999999999******** PP

      AAA_22  99 EaqhlrseealeeLrslln 117
                 E+  +   +++ +L ++  
  CDO73329.1 262 EVSMV-DGDLFDKLARIGS 279
                 **999.7888887765544 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.7e-07   0.00071       2      46 ..     541     578 ..     540     580 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.7e-07
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAr 46 
                 a+a++ihk+QG+  + V v   dla     e  +  +Y+a++RA+
  CDO73329.1 541 AWAMSIHKSQGQTLERVKV---DLAKVF--E--KGQAYVALSRAT 578
                 8******************...433322..2..5679*******7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.1   5.8e+03       4      24 ..      51      71 ..      48     101 .. 0.66
   2 !   15.5   0.1   2.1e-05     0.017      19      51 ..     166     196 ..     155     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.1
      AAA_16  4 GReeeleqLlsalervrsgrp 24
                G e+ l+ +++al++  s+++
  CDO73329.1 51 GLEQRLKDIQDALNAQISSSE 71
                666677777777774444433 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.1e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd 51 
                 v +g  ++++ +G +G GKs l+re+ ++l+k+
  CDO73329.1 166 VGAG--QSLFYTGSAGAGKSVLLREIIKSLRKR 196
                 4444..68999********************99 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     7e-05     0.057      23      54 ..     431     461 ..     412     470 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-05
      SH3_13  23 grvfrvgDkVmqlkNnydkgvfNGDiGiikei 54 
                 + v+++g +Vm +kN  d  + NG +G+i  +
  CDO73329.1 431 RLVLKEGSQVMLIKNMDD-TLVNGTMGKILGF 461
                 44599**********988.899******9865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.7e-05     0.046       4      31 ..     173     200 ..     170     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-05
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 + +G aG GK++Ll++++  ++++++++
  CDO73329.1 173 FYTGSAGAGKSVLLREIIKSLRKRYQKS 200
                 568********************99876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00013       0.1       4      67 ..     175     263 ..     172     269 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
                 ESSTTSSHHHHHHHHHHHH.................THEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTS.......TSEEEEEETG CS
         AAA   4 yGppGtGKTllakavakel.................gvefleisgsellsk.....yvgesekkirelfkeakeka.......kpsilfiDEi 67 
                 +G  G GK+ l + ++k+l                 g+  ++i g ++  +     +  es++++++ +k+   ++       ++++l+iDE+
  CDO73329.1 175 TGSAGAGKSVLLREIIKSLrkryqkspdavavtastGIAACNIGGVTIH-SfagigLGIESAEQLANKIKK---NRkattrwlRTKVLIIDEV 263
                 6999**************8444333222222222222334444444444.156444334455555555544...44445899988*******8 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00024       0.2      18      51 ..     166     201 ..     144     207 .. 0.80
   2 ?   -2.4   0.0       5.3   4.3e+03      93     105 ..     596     608 ..     575     611 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT------T CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgveevkSP 51 
                 +  g+ ++ +G  GaGK++l r+++k+l  +  kSP
  CDO73329.1 166 VgaGQSLFYTGSAGAGKSVLLREIIKSLRKRYQKSP 201
                 244667999*******************87788888 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.3
                 CEEEEETGGGGCC CS
        TsaE  93 avvlvEWpeklee 105
                 +  +vEW++ le+
  CDO73329.1 596 HPKVVEWSKTLET 608
                 4679***998765 PP

>> DUF5605  Domain of unknown function (DUF5605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.12      21      63 ..     516     562 ..     514     574 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
     DUF5605  21 rprerefelp....egsrykveviDtWnmtieelpgvfegkvrveLP 63 
                 +p+++++elp    + sr +  +i +W+m i++ +g+  ++v+v+L 
  CDO73329.1 516 APENWKVELPngevQVSRTQLPLILAWAMSIHKSQGQTLERVKVDLA 562
                 6999******666666799999****************9*****995 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.12       4      96 ..     172     262 ..     169     353 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke..ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDE 96 
                 ++ tG aG+GK+v+l +++  l+  ++++++  ++   +   +   ++ + +  +   ++  +e  +++ n+++  k+++++ +  + +v+i+DE
  CDO73329.1 172 LFYTGSAGAGKSVLLREIIKSLR--KRYQKSPDAVAVTASTGIAACNIGGVTihSFAGIGLGIESAEQLANKIK--KNRKATTRWLRTKVLIIDE 262
                 5779******************3..3333322222222333333333333333334466666666666666666..5555555666666777776 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00017      0.14      21      66 ..     161     207 ..     146     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                 HHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--E.EEEEE- CS
        MeaB  21 rllakaGraqvvGltGvPGaGkstlvealglelrrrGkrv.avlavD 66 
                 ++l   G  q +  tG+ GaGks l+ +++ +lr+r ++    +av 
  CDO73329.1 161 HILRLVGAGQSLFYTGSAGAGKSVLLREIIKSLRKRYQKSpDAVAVT 207
                 5777889999999**********************988742344544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.19      28      62 ..     164     197 ..     156     212 .. 0.83
   2 ?   -3.1   0.0       5.8   4.7e+03      82     117 ..     238     271 ..     235     275 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkeky 62 
                  l+ ++++++++G++G GK+v++++++k+l  ++y
  CDO73329.1 164 RLVGAGQSLFYTGSAGAGKSVLLREIIKSLR-KRY 197
                 67889999*********************99.444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.8
       AAA_7  82 iesklekrrkgvygPpggkklvvFvDDlnmpakeky 117
                 + +k++k rk +     +k  v+ +D+++m   + +
  CDO73329.1 238 LANKIKKNRKATTRWLRTK--VLIIDEVSMVDGDLF 271
                 5667777777666555555..455799999877655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.9    0.0017       1.4      23      47 ..     172     196 ..     158     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0017
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledk 47 
                 +f +G+ g GK+ Ll+eii+ l++ 
  CDO73329.1 172 LFYTGSAGAGKSVLLREIIKSLRKR 196
                 5678****************99653 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00036      0.29      23      62 ..     172     211 ..     160     274 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00036
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESX CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFdsvawvvvskt 62 
                 ++  G +G GK++l+++i++++ +  ++ +  + v+ s  
  CDO73329.1 172 LFYTGSAGAGKSVLLREIIKSLRKRYQKSPDAVAVTASTG 211
                 6789****************96555444445555555555 PP

>> Muraidase  N-acetylmuramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00047      0.38      60     122 ..     171     248 ..      96     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
   Muraidase  60 t...............rglykggaaeyerLekAaaldeeaAlksaswGlfQimGfnykelgyksvedfvekmseseae 122
                 +               r++ k+ +++y++   A+a+ ++  ++++ +G + i  f    lg++s+e++++k +++ ++
  CDO73329.1 171 SlfytgsagagksvllREIIKSLRKRYQKSPDAVAVTASTGIAACNIGGVTIHSFAGIGLGIESAEQLANKIKKNRKA 248
                 055555555555566678889999************************************************999876 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0013       1.1      25     106 ..     106     196 ..     104     211 .. 0.70
   2 ?   -1.1   0.0       2.4   1.9e+03      49      82 ..     536     571 ..     528     579 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0013
  MaoC_dehydrat_N  25 avgetnpayldeeaaraa..gy......rsliaPptflivlatkap.ellealgidlsrllhgeqefeyhepiraGDelttesriadvydk 106
                      av++++pay +++   +a          ++l++P    + +a k + ++l++ +  + rl+ ++q++ y   + aG ++  ++ i++++++
       CDO73329.1 106 AVQSSKPAYSSQASSSRAfgATrqvntnETLVVPSASKSSAASKPAaVFLSQEQTHILRLVGAGQSLFYTGSAGAGKSVLLREIIKSLRKR 196
                      7777777777777655444222111111455555555555555554577788899******************************999985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.4
  MaoC_dehydrat_N  49 aPptflivlatkap..ellealgidlsrllhgeqef 82 
                       P  ++ ++++++   + le +++dl+++   +q +
       CDO73329.1 536 LPLILAWAMSIHKSqgQTLERVKVDLAKVFEKGQAY 571
                      455555555554445678899*******99888876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.7   3.9e+03      96     115 ..      61      80 ..      26     137 .. 0.78
   2 ?    9.9   0.1    0.0012      0.98      10      36 ..     168     194 ..     164     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.7
                 GTTCBGESTTSGGS-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkq 115
                 +  +  ++ss ++LS+ qk+
  CDO73329.1  61 DALNAQISSSETTLSQSQKR 80 
                 34455556666777777765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0012
                 TTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllk 36 
                 +g+ +  +G+ GaGKS Ll+ +++ l+
  CDO73329.1 168 AGQSLFYTGSAGAGKSVLLREIIKSLR 194
                 78889999************9988765 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.6     0.016        13      23      55 ..      48      80 ..      47      87 .. 0.88
   2 ?    3.2   0.0      0.11        90      30      49 ..     185     204 ..     178     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.016
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkk 55
                kLs  e++l+ +++ L+++++ +e+++++ +k+
  CDO73329.1 48 KLSGLEQRLKDIQDALNAQISSSETTLSQSQKR 80
                89999*********************9998887 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
  TMF_DNA_bd  30 klnntikkLrkknkelekei 49 
                  l+++ik+Lrk  +++   +
  CDO73329.1 185 LLREIIKSLRKRYQKSPDAV 204
                 589********999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 3851.38
//
Query:       CDO73330.1  [L=3099]
Description: hypothetical protein BN946_scf185008.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-52  178.5   0.0    4.7e-52  177.3   0.0    1.6  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.7e-18   67.2   0.2    1.3e-17   64.3   0.0    2.8  2  TAN             Telomere-length maintenance and DNA damage re
    3.5e-12   45.9   0.2    9.1e-12   44.6   0.2    1.8  1  FATC            FATC domain


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.0   7.8e-56   4.7e-52       8     249 ..    2768    3010 ..    2760    3011 .. 0.92

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 7.8e-56
                      CSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH...HHHHCHCHCC CS
  PI3_PI4_kinase    8 vgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves...lrvaldkkkl 97  
                      ++dd+rqd ++ qvf l++ +l++++++ rrkl+++ y+vipl+ ++g++e+v++++++a+ l+  +    ++p     s   +r+a   k++
      CDO73330.1 2768 GNDDMRQDAVMEQVFDLVNVVLRRDRETARRKLSVRGYKVIPLAAQAGVLEFVENTTPLAQWLRPAHPR--YRPSDISMSefsNRLAGADKDW 2858
                      579**************************************************************9954..4443333334677777777777 PP

                      HHHHHCC..HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSS CS
  PI3_PI4_kinase   98 kkekklk..fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllp 188 
                      ++  ++   ++ +  + +k ++ ++F++k++s+  w++ r +++rs+a  s++++ilg+gDRh +Nil+d+++g+++hID G+++ +++k l+
      CDO73330.1 2859 QRDPQMVidRFIKLRERFKPVMRHWFTEKHKSPMPWFRTRLNYARSVATNSIVGHILGIGDRHTSNILIDEETGEVVHIDLGIAF-EQGKMLN 2950
                      7776666899***************************************************************************.9999999 PP

                      S-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  189 fpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                       p e+vPfrlt ++++ ++ s+  g f+++ ee+l++lr  +++++++l+ + +d+l +w+
      CDO73330.1 2951 QP-ERVPFRLTADMIDGLGMSGTQGVFQRCAEETLRVLRDGSEIILTVLEVFKYDPLHSWT 3010
                      9*.******************************************************9996 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.2e-21   1.3e-17       1     151 []       9     167 ..       9     167 .. 0.93
   2 ?   -3.2   0.1       1.4   8.4e+03      50      94 ..     950    1012 ..     925    1016 .. 0.56

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.2e-21
         TAN   1 lkealrlLssskikeRnkaldeLkhllsskrn..ktslsdlkdkawheifeaLfklvekEkeaylkkkk......ssttksaaasRLskaasalRllve 91 
                 l++++++L+ +k + R +a+++++  +s++    kt+ +d  +k+w  if+ Lf++  ++ +++++k        ++ +++ + +RLs++a+++R+l++
  CDO73330.1   9 LNDIIDALKGEKETLRAQAAKDIQIWFSNQAVvaKTNNQDAYGKTWLIIFQGLFEAYGNQLKKCISKLGsldaieTTGANNISVRRLSDIADTVRFLAS 107
                 6899**************************999888888*************************987778888765566667788************** PP

         TAN  92 kavsklk.rktlkalldhitqllpgpdgelleplaldyikaLrsllsvpphvehLskeqWe 151
                 ++ + l+ + +lk +l+h+++ l ++ g+l++ +a + ++++ ++ls +ph++ L   qW+
  CDO73330.1 108 RSREGLRgYPVLKPILTHLIDKL-THGGKLVTLVASQWAQTIGIFLSWQPHLQALPVLQWH 167
                 ***********************.6889********************************6 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
         TAN   50 aLfklvekEkeaylkkkk..................ssttksaaasRLskaasalRllvekav 94  
                  aL+k +    +  +kk++                  +++++++aa+ L ++a+  R + + +v
  CDO73330.1  950 ALLKTLRDVLSETMKKTAtltstpgvasrddfvpvlHAAASAQAAKALASMATHCRHVTRSCV 1012
                  333333333333333333333355555556666665555566677777777777777766666 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.2   1.5e-15   9.1e-12       2      32 .]    3069    3099 .]    3068    3099 .] 0.98

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.5e-15
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  Lsve +V++LI  A dp NLa my+GW+P+w
  CDO73330.1 3069 LSVEYTVNELITAASDPANLALMYVGWAPYW 3099
                  9****************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3099 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.35u 0.31s 00:00:01.66 Elapsed: 00:00:00.51
# Mc/sec: 18377.99
//
Query:       CDO73331.1  [L=565]
Description: hypothetical protein BN946_scf185008.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   50.7   1.4      4e-13   49.0   1.4    2.0  1  F-box-like    F-box-like
     0.0016   18.3   0.8      0.013   15.4   0.3    2.9  2  F-box         F-box domain
     0.0058   16.4   0.0       0.01   15.6   0.0    1.3  1  Med6          MED6 mediator sub complex component
  ------ inclusion threshold ------
      0.066   13.7   1.4         41    4.8   0.1    4.7  5  LRR_4         Leucine Rich repeats (2 copies)
       0.14   12.1   0.1       0.54   10.2   0.0    1.9  2  F-box-like_2  F-box-like domain
       0.15   11.8   3.0         31    4.4   0.3    4.0  4  LRR_8         Leucine rich repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   1.4   1.3e-16     4e-13       1      47 [.      34      99 ..      34     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.3e-16
  F-box-like  1 isrLPdEiLlqIF.................syL..ppsdLlrlalVCrrWrrvaldtplLWrrlvl 47
                i+rLP+E+L++IF                 sy+   ++ ++++++VCr+Wr++al+tp+LW ++vl
  CDO73331.1 34 IARLPPELLSEIFlhlaelsyndiglsfrpSYVcaRFYAWVSVTHVCRSWRTIALNTPRLWGHIVL 99
                689**********88888888887777766665113557***********************9997 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   4.3e-06     0.013       3      36 ..      34      86 ..      32      94 .. 0.94
   2 ?   -2.9   0.0       2.3   6.8e+03      31      38 ..     357     364 ..     357     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.3e-06
                HHHS-HHHHHHHHHTS-HHH...................HHHHCTT-HHHHHH CS
       F-box  3 lsrLPsevlrhILerLplsd...................llalrrVSkgwril 36
                + rLP+e+l +I+ +L   +                    ++   V+++wr +
  CDO73331.1 34 IARLPPELLSEIFLHLAELSyndiglsfrpsyvcarfyaWVSVTHVCRSWRTI 86
                89************************************************987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 HHHHHHHT CS
       F-box  31 kgwrilid 38 
                 +gwr l+d
  CDO73331.1 357 RGWRALVD 364
                 89***998 PP

>> Med6  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06      0.01      12      62 ..     168     258 ..     159     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
        Med6  12 lgLtennvldYFaespFydktsnNevlkmqrqfnqaaeeal........................................LkkmkGleyv 62 
                 + L++    dY  +spFy+ +  N+ +++q+q  ++ e ++                                        L+km+ ley 
  CDO73331.1 168 NILETVVLSDYSHTSPFYNASDINQPIFRQEQLPRMRELEIrrlvfrwdsyalspritrlvingrldsqallgtfdtllstLQKMHNLEYL 258
                 5678888889**********************99998777678888888888889999999999999999999999999999999999985 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   1.2e+04      20      30 ..     196     208 ..     189     210 .. 0.70
   2 ?    4.8   0.1     0.014        41      17      32 ..     247     262 ..     222     269 .. 0.71
   3 ?    0.2   0.2      0.38   1.1e+03      22      33 ..     283     294 ..     271     309 .. 0.55
   4 ?    1.7   0.0      0.12   3.7e+02      18      33 ..     415     430 ..     408     440 .. 0.80
   5 ?    0.1   0.1      0.41   1.2e+03      19      33 ..     453     466 ..     449     472 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.1
                 H..H-TT--EEE- CS
       LRR_4  20 e..klpnLkeLdL 30 
                 +  +lp ++eL +
  CDO73331.1 196 RqeQLPRMRELEI 208
                 3446999999987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
                 S-HHH-TT--EEE-.- CS
       LRR_4  17 plleklpnLkeLdLsg 32 
                 + l+k+ nL++L L +
  CDO73331.1 247 STLQKMHNLEYLELED 262
                 33668********944 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.38
                 -TT--EEE-.-S CS
       LRR_4  22 lpnLkeLdLsgN 33 
                 +p L+ L L g 
  CDO73331.1 283 FPRLQRLVLIGT 294
                 666666665443 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.12
                 -HHH-TT--EEE-.-S CS
       LRR_4  18 lleklpnLkeLdLsgN 33 
                  ++++p+L+eL +sg 
  CDO73331.1 415 VFAGMPDLEELAISGD 430
                 4789*******99987 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.41
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 l  lp+L+ L L++ 
  CDO73331.1 453 LV-LPSLRMLRLTHT 466
                 66.888888888554 PP

>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018      0.54      22      91 ..      34     100 ..      25     114 .. 0.86
   2 ?   -2.2   0.0       1.4   4.1e+03      75      91 ..     205     227 ..     190     238 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
  F-box-like_2  22 llDlPdellelifkgCkdpayeplspslakayrrkrkhieylLaqpkqcralkklltptskplWldelrv 91 
                   +  lP ell  if +  + +y ++  s++ +y  +r   +  +  +++cr  + +      +lW  ++ +
    CDO73331.1  34 IARLPPELLSEIFLHLAELSYNDIGLSFRPSYVCARFYAWVSV--THVCRSWRTI-ALNTPRLWGHIVLT 100
                   6669******************************9*9999999..********99.44445899877655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
  F-box-like_2  75 kl......ltptskplWldelrv 91 
                   +l      +++ s  l  ++ r 
    CDO73331.1 205 ELeirrlvFRWDSYALSPRITRL 227
                   44444447999998887777664 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.084   2.5e+02      44      57 ..     248     261 ..     243     263 .. 0.58
   2 ?   -3.5   0.1         3     9e+03      35      44 ..     300     309 ..     298     312 .. 0.72
   3 ?    2.9   0.0     0.031        94      43      58 ..     414     429 ..     413     431 .. 0.67
   4 ?    4.4   0.3      0.01        31      48      61 .]     455     468 ..     453     468 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.084
                 GGTT--S-.EEE-- CS
       LRR_8  44 afsgLpsLrsLdLs 57 
                 +++ +++L++L L+
  CDO73331.1 248 TLQKMHNLEYLELE 261
                 44555555555554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 S---GGGGGG CS
       LRR_8  35 Nllttlspga 44 
                 Nll+++s ++
  CDO73331.1 300 NLLNHISLHS 309
                 8888888765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.031
                 GGGTT--S-.EEE--S CS
       LRR_8  43 gafsgLpsLrsLdLsg 58 
                 ++f+g+p L++L +sg
  CDO73331.1 414 DVFAGMPDLEELAISG 429
                 5677777777777776 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.01
                 --S-.EEE--SS-- CS
       LRR_8  48 LpsLrsLdLsgNrL 61 
                 LpsLr+L L+++rL
  CDO73331.1 455 LPSLRMLRLTHTRL 468
                 89*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3999.78
//
Query:       CDO73332.1  [L=599]
Description: hypothetical protein BN946_scf185008.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   50.8   1.9    5.2e-13   48.7   1.4    2.4  2  F-box-like     F-box-like
    0.00045   20.0   4.5     0.0027   17.5   0.1    3.9  4  F-box          F-box domain
  ------ inclusion threshold ------
       0.14   11.6   0.2         14    5.2   0.4    2.8  3  Peptidase_M74  Penicillin-insensitive murein endopeptidase


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   1.4   8.7e-17   5.2e-13       1      47 [.      47     109 ..      47     110 .. 0.86
   2 ?   -1.6   0.0      0.43   2.6e+03       2      14 ..     317     329 ..     316     357 .. 0.74

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 8.7e-17
  F-box-like   1 isrLPdEiLlqIF................syLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 i+rLP+EiL+++F                  L+ + +l++a+VCr Wr++aldtp+LW+++ +
  CDO73332.1  47 IARLPPEILSEVFalismhyyeqswryqhGPLHVYKWLAVAHVCRAWRSIALDTPRLWSNIII 109
                 689**********99998888887744433488999***********************9865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.43
  F-box-like   2 srLPdEiLlqIFs 14 
                 ++LP+ +  +I  
  CDO73332.1 317 LSLPPNVKFKIVA 329
                 68****9999973 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   4.5e-07    0.0027       2      43 ..      46     104 ..      45     109 .. 0.87
   2 ?    0.6   0.2      0.09   5.4e+02      11      26 ..     257     272 ..     255     274 .. 0.91
   3 ?   -1.8   0.0      0.54   3.2e+03       5      27 ..     318     343 ..     317     344 .. 0.81
   4 ?   -0.3   0.0      0.18   1.1e+03      31      42 ..     368     379 ..     368     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.5e-07
                 HHHHS-HHHHHHHHHTS-HHH................HHHHCTT-HHHHHHH.TTHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsd................llalrrVSkgwrili.dsdrlw 43 
                 ++ rLP+e+l +++   +  +                 la + V++ wr++  d +rlw
  CDO73332.1  46 PIARLPPEILSEVFALISMHYyeqswryqhgplhvykWLAVAHVCRAWRSIAlDTPRLW 104
                 899**********************************************9751444444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.09
                 HHHHHHTS-HHHHHHH CS
       F-box  11 lrhILerLplsdllal 26 
                 l+++L ++ + ++l+l
  CDO73332.1 257 LLNVLDHMRFLEVLSL 272
                 789**********998 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.54
                 HS-HHHHHHHHHTS-HHH...HHHHC CS
       F-box   5 rLPsevlrhILerLplsd...llalr 27 
                 +LP+ v  +I  r +  +   + alr
  CDO73332.1 318 SLPPNVKFKIVARTERGSvdfVQALR 343
                 79**9999999998888877777776 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.18
                 HHHHHHHTTHHH CS
       F-box  31 kgwrilidsdrl 42 
                 +gwr+ i+s + 
  CDO73332.1 368 RGWRSTIKSRES 379
                 89******9876 PP

>> Peptidase_M74  Penicillin-insensitive murein endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.4    0.0023        14     146     182 ..     320     358 ..     296     366 .. 0.79
   2 ?    2.7   0.0     0.013        79     100     160 ..     375     435 ..     361     446 .. 0.76
   3 ?   -1.5   0.0      0.25   1.5e+03     152     177 ..     523     549 ..     515     556 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0023
                    -HHHHHHHH.HHHTT--GGGGGEEE-SS-SSEEE.EEE- CS
  Peptidase_M74 146 npaiKkalC.eeakgdrswLrkvrPwlgHdaHfH.vRlk 182
                     p +K ++  ++++g  ++++ +r  l H++H+H vRl+
     CDO73332.1 320 PPNVKFKIVaRTERGSVDFVQALRDHLDHTDHLHtVRLE 358
                    57888776515566999*****************88886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.013
                    HHHHS------B-TTSSSB-TTT--HHHHHHHHHHHHSTTEEEEEE-HHHHHHHHHHHTT- CS
  Peptidase_M74 100 eereklsalslvkkdklkvdekkwteehaklirlaasdpeveRifvnpaiKkalCeeakgd 160
                    ++re++ ++   ++ +  +d++++ +   +li+ +a  ++v+R++++p+ ++ + +e  ++
     CDO73332.1 375 KSRESVFEVLAEADVDVYLDTNAFGRPLDTLISNSAFLSHVQRLMIEPTSRNWFWRELFAE 435
                    45555555555555567789999*************************9888776665555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.25
                    HHHHHHT.T--GGGGGEEE-SS-SSEE CS
  Peptidase_M74 152 alCeeak.gdrswLrkvrPwlgHdaHf 177
                    ++C +a  +d + Lr + P+++ d H+
     CDO73332.1 523 RMCLNADtEDIDRLREIVPYVQWDGHV 549
                    68988754899**********999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4038.28
//
Query:       CDO73333.1  [L=134]
Description: hypothetical protein BN946_scf185008.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-20   73.7   1.2    3.9e-20   72.4   1.2    1.5  1  RNA_pol_Rpb4  RNA polymerase Rpb4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   1.2   2.2e-24   3.9e-20      41     122 ..      49     129 ..      28     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.2e-24
                   HCHHHHHHHHHHHCTHHTTSSHHHHHHHHHHHTTST.STHHHHHHHHHCSTSSHHHHHHHSTTGTTTSTSHHHHHHHHHHHHH CS
  RNA_pol_Rpb4  41 lnkilkktleyltnkfsrlkneekfnelvellksfe.LtkaEklqlvnlkPesavelktlieeleerfedeqleeiLdelkev 122
                    +++ kktley+++ f++++++e++++++e+l++ + Lt++E++q+ nl+P +a+e+k++i++l  ++ed++l+ +Lde++++
    CDO73333.1  49 DTTVYKKTLEYVKT-FAKFDKPEAAAAIRETLRRESaLTQFEIAQIANLCPVTAEEAKSIIPSLV-KIEDDKLQPLLDEIQTM 129
                   57899*********.******************9999***************************8.9*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 934.18
//
Query:       CDO73334.1  [L=469]
Description: hypothetical protein BN946_scf185008.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-72  245.0  21.9    1.5e-72  244.6  21.9    1.1  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.6  21.9   8.4e-77   1.5e-72       4     405 ..      50     455 ..      47     460 .. 0.93

  Alignments for each domain:
  == domain 1  score: 244.6 bits;  conditional E-value: 8.4e-77
    Aa_trans   4 salsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsyl 102
                 +  s++ nl+++i+G+G+L+ P A++++G+i+G+i+ l+ +++  ++l+lL+ c+ + +  +r++s++++++ ++ + + +++d+ai++++fGv++syl
  CDO73334.1  50 TLSSSISNLANTIIGSGMLTFPLALASAGIIPGMITCLFSGAVAGFGLYLLSLCAVKAP--HRRASFFAVAELTFPR-AAVFFDAAIAIKCFGVSISYL 145
                 6778999*************************************************988..9********9888877.89******************* PP

    Aa_trans 103 iligdllpaifesffdt..........lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkaskl 191
                 i++++l+p+++  + ++          ++ls   + li+++ +ipL++++ l++L+ +S++al+s++y++vi+v+  +  +k++++  +   +  ++  
  CDO73334.1 146 IIVKSLMPNVIAALYHDltspdvnppaWTLSGQNWLLIIMVPLIPLAFLRRLDSLRHTSYIALFSVAYLVVIVVVCYFFPLKGTPERGEIHLI-HFT-- 241
                 *************999999*************************************************9999999999999999999999988.444.. PP

    Aa_trans 192 kglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplq 290
                  ++++++++ vFA+t++ +l++i ne+ ++ + k m  v+ +si  a+++y +++++GYltFG +v  ni+  +p +s +i++++l++++ +++s+plq
  CDO73334.1 242 PNFISTFPVQVFAYTCAQNLFPIFNEISSNTQ-KRMNIVIGTSIGSAALIYEIIAVFGYLTFGTKVGANIIAMYPSTSLFIAVGQLAIAILVMFSYPLQ 339
                 49******************************.99**************************************************************** PP

    Aa_trans 291 lhplrqvvenllikk............eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekk 377
                 +hp+r  ++++++              e+++ + +     s l + ++++++v++  +iA +v +l+        ++st++sfilP+lf+ kl  ++ +
  CDO73334.1 340 VHPCRNCLDKVFHAAhvlskqagdpedEEPEDEHGGSHDMSPLKHTLLTIAIVASGFTIAYFVDNLQ--------MGSTTISFILPGLFYWKLSHNDPN 430
                 ************998**********9988888888889999999**********************7........79999*****************87 PP

    Aa_trans 378 sleklvkkkildlicivlglllvfygla 405
                 + ++l  +   +l  ++ g++++++ l+
  CDO73334.1 431 ASKTLS-RA--ALGLAIYGIFIFIFCLS 455
                 777774.32..45666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3310.47
//
Query:       CDO73335.1  [L=818]
Description: hypothetical protein BN946_scf185008.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-15   57.1   2.7    2.3e-15   57.1   2.7    4.9  3  SUZ              SUZ domain
    0.00016   21.6   0.0    0.00034   20.5   0.0    1.5  1  R3H              R3H domain


Domain annotation for each model (and alignments):
>> SUZ  SUZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   2.7   2.5e-19   2.3e-15       1      57 []     120     196 ..     120     196 .. 0.78
   2 ?   -5.8   6.6         2   1.8e+04       9      29 ..     258     278 ..     209     295 .. 0.74
   3 ?   -4.6  10.5         2   1.8e+04       8      34 ..     563     589 ..     563     612 .. 0.73

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.5e-19
         SUZ   1 eepkmkIlkRpsssss...ssssrgssgasssesssss.....................ktleEREaeYaeARaRIFgsfe 57 
                 ++p+++I++Rp ++++   ++s++g+++ +s+                           kt+eEREa+Y+eAR+RIF++fe
  CDO73335.1 120 AQPTIQIMRRPRGGRQhsqPGSTAGEDADTSDV----DaseagsigsrgnassaaskrfKTIEEREAAYNEARSRIFMDFE 196
                 58************9933333333333333333....2456699999********************************96 PP

  == domain 2  score: -5.8 bits;  conditional E-value: 2
         SUZ   9 kRpsssssssssrgssgasss 29 
                 +R+++s +ss+s  ssg+s +
  CDO73335.1 258 RRGGGSTTSSRSLRSSGPSYT 278
                 444455444444444444433 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 2
         SUZ   8 lkRpsssssssssrgssgasssessss 34 
                 ++R s++ssss s+g+++++ ++ss +
  CDO73335.1 563 MRRTSGTSSSSGSAGARTPADETSSTA 589
                 899999999777777777776666554 PP

>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.8e-08   0.00034       3      44 ..      44      85 ..      43      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.8e-08
                HHHHHHHHHHHHH-S--EEE-----SHHHHHHHHHHHHSSEE CS
         R3H  3 llrvekklaefvkdtgrslefppmssyeRriiHelaeaygle 44
                +l++ ++++ ++kd + ++ + p +sy+R+++H+  ++y+l+
  CDO73335.1 44 VLKLGEQMEALIKDRRVRIDLTPATSYQRLLVHRCSAYYKLA 85
                689999******9999***********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.40s 00:00:01.25 Elapsed: 00:00:00.56
# Mc/sec: 4362.52
//
Query:       CDO73336.1  [L=248]
Description: hypothetical protein BN946_scf185008.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   22.3   0.0    0.00023   21.3   0.0    1.5  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-08   0.00023      12     109 ..      12     118 ..       6     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-08
                 -EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST....TTTTCCCE....EEEETTSGHHHHHHHHHHHHHSEEEC-.....CGGGHHHHHHHHHHHT-H CS
         BTB  12 DvtlvvgdgkefkahkavLaarSpyFkalftsk....eieessvs....eielddvepeafealLefiYtgeleit.....seenleelLaaadllqip 97 
                 Dv+l++ d+ ef++   +L  +Sp+F++++       e   s+ +    ++     ++++ e  L  iY+   + +     +  +++++L+a   +qi 
  CDO73336.1  12 DVILRTSDNVEFRVRSHILIEASPVFEKMLARRkssaE---SD-TsasrRVIDLTEDSTTTETWLLLIYPVFQDPSfwsrmDLLKAQAVLHATAEYQIL 106
                 9******************************9965432...22.2355544344456667777777888876666677677677889999999999999 PP

                 HHHHHHHHHHHH CS
         BTB  98 rlkkaceeflkq 109
                 +++ a+ ++l++
  CDO73336.1 107 AVQSAIAHYLSR 118
                 999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1757.61
//
Query:       CDO73337.1  [L=613]
Description: hypothetical protein BN946_scf185008.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   14.9   0.1       0.13   12.2   0.0    2.4  2  DUF4609   Domain of unknown function (DUF4609)


Domain annotation for each model (and alignments):
>> DUF4609  Domain of unknown function (DUF4609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.1   1.8e+03      38      60 ..     132     154 ..     119     160 .. 0.78
   2 ?   12.2   0.0   7.2e-06      0.13      11      31 ..     303     323 ..     297     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.1
     DUF4609  38 eeqrTirEqadwGpysRHRnPSt 60 
                   q  i+ ++   +y  HR PS+
  CDO73337.1 132 TPQFLIQQTHGPPTYFLHRFPSI 154
                 55666777777778999****96 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.2e-06
     DUF4609  11 kkkvviPqiiiTraSnEtlis 31 
                  ++  +P+i++T +S+E l++
  CDO73337.1 303 NRRLSVPRIVVTNPSSENLVA 323
                 57899**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 4097.77
//
Query:       CDO73338.1  [L=162]
Description: hypothetical protein BN946_scf185008.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.18   11.3   0.0    1.2  1  CheR      CheR methyltransferase, SAM binding domain


Domain annotation for each model (and alignments):
>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     1e-05      0.18      20      55 ..      43      75 ..      31     103 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1e-05
                H.HHHHHHHTSSSEEEEEES-TTTHHHHHHHHHHHC CS
        CheR 20 lepllakaknekrvriwsagcssGeEpYslAmllke 55
                  +ll++a ++ ++++w a+c +G E+  lA l++e
  CDO73338.1 43 TAELLSRA-THAPLSVWAAACRTGLET--LARLAAE 75
                33334444.5899*************6..5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1223.02
//
Query:       CDO73339.1  [L=671]
Description: hypothetical protein BN946_scf185008.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4319.44
//
Query:       CDO73340.1  [L=1085]
Description: hypothetical protein BN946_scf185008.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.1   0.2      0.028   14.0   0.2    1.4  1  DUF4218   Domain of unknown function (DUF4218)


Domain annotation for each model (and alignments):
>> DUF4218  Domain of unknown function (DUF4218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   1.5e-06     0.028      26      67 ..     760     801 ..     750     820 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-06
     DUF4218  26 EkiFppaffdvmvHLivHlvdeaklaGPvhyrnmypveRkll 67 
                 E++    +     HL++H ++  +l GPv++ + y+ eR+  
  CDO73340.1 760 EMLCLGVHLVPNHHLAMHYPEIFRLFGPVYAWWLYAQERYNG 801
                 5666666666678**************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 7131.60
//
Query:       CDO73341.1  [L=542]
Description: hypothetical protein BN946_scf185008.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.7   0.1       0.98    9.5   0.0    2.4  2  Voldacs   Regulator of volume decrease after cellular swellin
       0.77   10.1   4.6       0.77   10.1   2.8    1.9  2  CCDC-167  Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   9.9e+02      41      91 ..      85     136 ..      64     168 .. 0.65
   2 ?    9.5   0.0   0.00011      0.98      75     114 ..     388     426 ..     351     438 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
     Voldacs  41 qeepclyvqldeeldesdn.keseegededdneededeeessveltlvPkna 91 
                  e + l++  d  lde+++ ++ eeg +   + +++   e++ e  l+P+ a
  CDO73341.1  85 AEAELLALKEDLGLDELEEeEDAEEGRQGAGSRASDPAGEQTREGMLRPTPA 136
                 5556666677777777766444444455555566666666666666666665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00011
     Voldacs  75 edeeessveltlvPknaeetildnifealsacqelhpdpd 114
                   + + +  +   P +  ++i++++++ + ac + hpd+d
  CDO73341.1 388 FVDRKATGYVSRAPGYR-SQIVQELYDHIDACKDPHPDKD 426
                 33333333344455555.68******************98 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.8   8.6e-05      0.77      11      62 ..      41      93 ..      37      96 .. 0.89
   2 ?   -2.7   0.0       0.9   8.1e+03      60      69 ..     255     264 ..     244     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.6e-05
    CCDC-167 11 eklascrerLeaverrlrkeelseeeRes.leeEeaslkeqleenekeLksLr 62
                 kl ++   +e+v+ ++r+ + s+e+R++ l+   + lk +l++ e eL  L+
  CDO73341.1 41 AKLNAVVTAVEEVNVEIREMKESSEKRDKvLYSVIKVLKARLSKAEAELLALK 93
                578888899******************9846799***************9987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.9
    CCDC-167  60 sLrkeNrksm 69 
                  Lrke rk+ 
  CDO73341.1 255 YLRKEARKHE 264
                 6999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.51
# Mc/sec: 3192.86
//
Query:       CDO73342.1  [L=94]
Description: hypothetical protein BN946_scf185008.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 669.46
//
Query:       CDO73343.1  [L=441]
Description: hypothetical protein BN946_scf185008.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   43.7   0.1    3.6e-05   24.0   0.0    3.2  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.7e-07     0.017       9     107 ..      24     140 ..      20     143 .. 0.79
   2 !   24.0   0.0     2e-09   3.6e-05      10     104 ..     243     351 ..     237     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.7e-07
                 TTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST.............TTTTCCCE.....EEEETTSGHHHHHHHHHHHHHSEEEC-..CGGGHHHH CS
         BTB   9 elcDvtlvvgdgkefkahkavLaarSpyFkalftsk.............eieessvs.....eielddvepeafealLefiYtgeleit..seenleel 87 
                 +  D +l+  dg  +++h +++a +S++F  + +                +++++v+     +++    +  ++++lL+ +Y+   + +  + +++  +
  CDO73343.1  24 SAADTVLRSSDGILLHVHSVIVAEASEVFAGMYSIPqpprllsvgrsggLDQDRTVDgggapVVQ-LAEDGLTLDRLLRLCYPIADP-EfkDPAEIRPV 120
                 56799*****************************99999***99999873344444466554443.34455689999*****86433.2467899**** PP

                 HHHHHHHT-HHHHHHHHHHH CS
         BTB  88 Laaadllqiprlkkaceefl 107
                 Laaa ++++++ + + ++ l
  CDO73343.1 121 LAAAIKYEMNEAVSLTKKAL 140
                 *********99998887766 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 2e-09
                 TS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTST........TTTTCCCEEE.EETTSGH.HHHHHHHHHHHHSEEEC-.....CGGGHHHHHHHHHH CS
         BTB  10 lcDvtlvvgdgkefkahkavLaarSpyFkalftsk........eieessvsei.elddvep.eafealLefiYtgeleit.....seenleelLaaadl 93 
                 + D++++  dg+ f+ hka+L   Sp++++ +           + +++++++i  l++ +p +++ alLe  Y+ + +++         + +l++aa+ 
  CDO73343.1 243 FADIICRSFDGQDFRSHKAILITVSPVLRERILALeakrsgsgT-NTNGSDNIpVLQFHNPaTELSALLELSYPVRRNSCfdvilPLHRVCALMKAAKT 340
                 7899999999*******************998888677777641.3333334414677777469*************999999998899********** PP

                 HT-HHHHHHHH CS
         BTB  94 lqiprlkkace 104
                 + ++ + k++e
  CDO73343.1 341 YAMDFVLKVLE 351
                 ****9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3052.41
//
Query:       CDO73344.1  [L=553]
Description: hypothetical protein BN946_scf185008.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-23   83.3   0.0    6.8e-16   58.6   0.0    2.4  2  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    3.9e-19   69.2   0.0    2.4e-18   66.6   0.0    2.0  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.4e-09   8.4e-05       2      92 ..       7     108 ..       6     112 .. 0.82
   2 !   58.6   0.0   7.6e-20   6.8e-16      93     244 ..     130     286 ..     127     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.4e-09
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SST...........T--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspke...........gwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd 89 
                  lglD++t+++ka+++d++g  v+ +++++  + p+                 +p  +w   ++ i + +++ag++ + i +I+  gq++g v +  + 
  CDO73344.1   7 FLGLDLSTQGLKAVLIDADGAPVHESSVNFDRDLPSYgttngairgpgPGEVTSPVRMWLDAYDLIMERMRAAGVDFSRILGISGDGQQHGSVYWSSEA 105
                 79*****************************999988433333333321233577788888999999999*************************9887 PP

                 EES CS
      FGGY_N  90 kpL 92 
                 + L
  CDO73344.1 106 ERL 108
                 544 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 7.6e-20
                 SEEE-TT--TTHHHHHHHHH.TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT.--EEEHHHHCTTTSEETTTTEE- CS
      FGGY_N  93 ynailwkdrrtaeiveklke.egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtg.qfvtdvtnasesmlfnikklewd 189
                 ++a +w+d  t  ++++l+   g++++l+  tg+ ++  ft+  ++ +++  p+++++++ + l+++++     g     +v++as+++l+n+ + +wd
  CDO73344.1 130 QRAPIWQDSSTTRECRELEDaIGGAQALADLTGSRAYERFTANQIAKIRRTAPSAYRATARISLVSSFMPSLFLGsIAPIEVSDASGMNLMNVLTCKWD 228
                 67889***************8899*********************************************99999945569******************* PP

                 HHHHHHTT--GG...GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHH CS
      FGGY_N 190 eellailgipee...lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaal 244
                 + ll+++g pe    + P+  +++   g+++p+  + +G++++  v++ +gD+ a+++
  CDO73344.1 229 DRLLEAAGGPELrekIGPEPAPGGTFLGQVHPYWVQRWGFNPECGVAPFTGDNPATVV 286
                 *******9665445599************************************99986 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.076   6.8e+02      74     106 ..     109     138 ..      82     144 .. 0.74
   2 !   66.6   0.0   2.7e-22   2.4e-18       2     198 .]     295     490 ..     294     490 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.076
      FGGY_C  74 laelaaaeavadaggvvfvpafsglrapywdpd 106
                 la   +++ + + ++ +   afs +rap+w ++
  CDO73344.1 109 LA---SLDPERPLAEQLAPVAFSIQRAPIWQDS 138
                 33...4555566667777799*********986 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 2.7e-22
      FGGY_C   2 kvslGTssflll.vg...tkpv..isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavada........ 86 
                  +slGTs++lll +    t p+     h l +p++     p  ++ ++++++g+l         +re++rd+    + + +++++  + +         
  CDO73344.1 295 ILSLGTSTTLLLsIPpaeTAPKrfTTSHLLSNPTT-----PDAHIAMLCYKNGAL---------AREQVRDQYAD-GHWTRFNELVEARPVgndgymgf 378
                 689*********75522244446677788888888.....9**************.........89999999998.99999999988888888877544 PP

      FGGY_C  87 .ggvvfv......pafsglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVe 178
                              p++ g++ +   p++  t+ + ++++   +  rA+le+++l++r ++ a+   +  pl+rl+++GG s n++++q +Ad++g+ V 
  CDO73344.1 379 yF----PlpeiipPNVQGNFFFSTSPSSVSTLSECDMPR--DAHPRAILESQFLSIRSRIAAILPPDAPPLQRLVLSGGSSLNPVIQQAAADVFGMRVF 471
                 40....3566667999***********************..6778******************9998888***************************99 PP

      FGGY_C 179 rpktaeatalGaAilAavaa 198
                 +++ +e++a G A lA +a+
  CDO73344.1 472 VAG-KEGAAEGGAQLARYAW 490
                 998.9***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3580.88
//
Query:       CDO73345.1  [L=378]
Description: hypothetical protein BN946_scf185008.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00082   20.0   2.2       0.06   14.0   0.1    2.5  2  YabA          Initiation control protein YabA
  ------ inclusion threshold ------
      0.061   13.2   0.0       0.18   11.6   0.0    1.7  1  CPT           Chloramphenicol phosphotransferase-like protein
      0.081   12.0   0.5       0.39    9.8   0.1    2.2  2  AAA_9         ATP-binding dynein motor region
       0.12   12.8   2.4        2.8    8.4   1.4    2.5  2  FlaC_arch     Flagella accessory protein C (FlaC)
       0.27   11.2   0.5       0.47   10.5   0.5    1.3  1  DPPIV_rep     Dipeptidyl peptidase IV (DPP IV) low complexity
       0.99    9.9   3.2        5.2    7.6   1.4    2.8  2  NPV_P10       Nucleopolyhedrovirus P10 protein
        1.3    9.1   6.9          2    8.5   3.6    2.3  2  SYCE1         Synaptonemal complex central element protein 1
        1.5    8.9   5.2       0.41   10.7   1.7    1.8  2  COG2          COG (conserved oligomeric Golgi) complex compon
        1.7    8.6  12.8        1.4    8.9   6.1    2.3  2  YscO-like     YscO-like protein
        3.2    6.3   9.8         12    4.4   9.8    1.7  1  AAA_13        AAA domain
        5.1    7.6  12.1        1.2    9.6   2.6    3.3  3  ZapB          Cell division protein ZapB
        5.3    7.2  16.3       0.46   10.7  11.1    2.0  2  ATG16         Autophagy protein 16 (ATG16)
          6    7.4  13.9       0.58   10.7   6.3    2.5  2  APG6_N        Apg6 coiled-coil region
        7.3    7.0   9.9        8.1    6.8   4.4    2.2  2  Fez1          Fez1
        7.8    5.5   9.1        4.9    6.1   2.0    2.3  2  Atg14         Vacuolar sorting 38 and autophagy-related subun
        8.8    6.6   8.2          3    8.1   0.5    2.7  2  Spc24         Spc24 subunit of Ndc80
        9.5    5.0  13.2       0.11   11.4   4.3    2.1  3  Spc7          Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.032        34      28      62 ..     100     134 ..      78     148 .. 0.66
   2 !   14.0   0.1   5.7e-05      0.06       7      57 ..     220     270 ..     216     293 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA  28 keelaelleenaeLeleneklrerleeeekkekek 62 
                  e+ +   e+n+ L++ene+ +e l+ ++++ +ek
  CDO73345.1 100 DEAPSINAEDNELLRIENERKKEILSAAKARLAEK 134
                 4444556799*************996555544444 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXX CS
        YabA   7 fdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeek 57 
                 +++++el+++l++++e++e++ke++++   e ++L++e   l ++++  ++
  CDO73345.1 220 VSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQD 270
                 57899*************************************999954333 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.18      11      68 ..      11      68 ..       8      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                TSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHH CS
         CPT 11 ssGKsslaralqevldepwlhlgvDafvealppkrqdeadglefeteleeigpeldll 68
                ssGK  +aralq+ ld++ lh+  D+  +  +++ ++++ gl  e++   ++p + ++
  CDO73345.1 11 SSGKLEVARALQAKLDAAKLHIVEDQTRFDTLQSALAKDPGLVSEGVAGTTDPAIVAA 68
                9**************************9999999999999999988888777766554 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.49   5.2e+02     190     213 ..      22      45 ..      14      50 .. 0.83
   2 ?    9.8   0.1   0.00037      0.39     139     184 ..      80     125 ..      60     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.49
                 HHHHHHSSSSSSTHHHHHHHHHHH CS
       AAA_9 190 LeeLseaegniLedeelietLeks 213
                   +L  a+ +i+ed++  +tL+++
  CDO73345.1  22 QAKLDAAKLHIVEDQTRFDTLQSA 45 
                 5689999999**********9985 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00037
                 EE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9 139 inFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlke 184
                 ++F   e+  +dq ++++v+ e p+++ + +el++ e+e kk++  
  CDO73345.1  80 LKFQYLEQKAKDQYVKTIVSDEAPSINAEDNELLRIENERKKEILS 125
                 67888888899************************99999988755 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.4    0.0026       2.8      13      38 ..     220     245 ..     209     251 .. 0.72
   2 ?    6.1   0.2     0.013        14       1      46 [.     236     283 ..     236     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
   FlaC_arch  13 steletvkkeneelsksveelkenVk 38 
                  +e++ + +e++ +++ ve++ke+Vk
  CDO73345.1 220 VSEMQELDDELQAVNERVEDVKERVK 245
                 35777777788888888888888776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenV..kdllsLYEv 46 
                 r++++ ++++    e+e ++ e  +l+k+v+  ++++   ++++LY+ 
  CDO73345.1 236 RVEDVKERVKAGAREVERLRVERADLEKTVKAGQDEIqdGRVVGLYDW 283
                 7889999999999999*********************6557*****85 PP

>> DPPIV_rep  Dipeptidyl peptidase IV (DPP IV) low complexity region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00044      0.47       2      11 ..     162     171 ..     162     171 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00044
   DPPIV_rep   2 srRtfTLeDY 11 
                 srR+f+L+DY
  CDO73345.1 162 SRRPFSLTDY 171
                 8********* PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.69   7.3e+02      38      68 ..      19      49 ..      11      55 .. 0.81
   2 ?    7.6   1.4    0.0049       5.2      32      58 ..     218     244 ..     176     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.69
     NPV_P10 38 telnekLdaqsaqLaeletkvenIqdiLnpd 68
                  l++kLda    + e +t  ++ q+ L +d
  CDO73345.1 19 RALQAKLDAAKLHIVEDQTRFDTLQSALAKD 49
                5688999999999999999999999998855 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0049
     NPV_P10  32 enlpdvtelnekLdaqsaqLaeletkv 58 
                 +++ +++el ++L+a ++ ++++++ v
  CDO73345.1 218 AQVSEMQELDDELQAVNERVEDVKERV 244
                 444444444444444444444444443 PP

>> SYCE1  Synaptonemal complex central element protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.34   3.6e+02      30      77 ..      90     138 ..      68     166 .. 0.69
   2 ?    8.5   3.6    0.0019         2       9      62 ..     218     271 ..     211     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.34
       SYCE1  30 eaqalkealkrElDsLnaEkvhLeevln.kKqealriLqlhcqekesea 77 
                 + q +k  +  E  s+naE  +L  + n +K+e+l+  + +  ek s+ 
  CDO73345.1  90 KDQYVKTIVSDEAPSINAEDNELLRIENeRKKEILSAAKARLAEKYSDV 138
                 4555566666677777777777777765247777777777777766665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0019
       SYCE1   9 dLinrineLQqakkksseELgeaqalkealkrElDsLnaEkvhLeevlnkKqea 62 
                   ++ ++eL    ++++e ++++++  +a  rE + L+ E++ Le++ ++ q+ 
  CDO73345.1 218 AQVSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQDE 271
                 556778888889999*******************************99988875 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       8.1   8.6e+03      96     101 ..     116     121 ..      90     140 .. 0.44
   2 ?   10.7   1.7   0.00039      0.41      69     116 ..     221     268 ..     214     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.1
        COG2  96 eeeves 101
                 e+e ++
  CDO73345.1 116 ENERKK 121
                 222222 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00039
        COG2  69 eeleevesplaaarkkvesvreklsereeeveskleeakeleekrell 116
                 +e++e++ +l+a+ ++ve+v+e +++  +eve    e+++le++ +  
  CDO73345.1 221 SEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAG 268
                 578899999***********************9999999999886655 PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.5     0.068        72      13      66 ..      95     148 ..      81     152 .. 0.54
   2 ?    8.9   6.1    0.0013       1.4      81     123 ..     225     267 ..     214     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.068
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
   YscO-like  13 kkrrveeAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaKvaqlreeldkG 66 
                 k    +eA  + ++ ++ L  E+e+ +++ ++   +  +k   v+ l   +++G
  CDO73345.1  95 KTIVSDEAPSINAEDNELLRIENERKKEILSAAKARLAEKYSDVRTLAPLVEQG 148
                 333445555555555555555555555555555555555555555555555555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  81 vvkeelkqeekkvekQkekVkvAerkvEqareelakkrkevek 123
                  +++el+ ++++ve+ ke+Vk+ +r+vE+ r+e a  +k v++
  CDO73345.1 225 ELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKA 267
                 58999999********************999998888777776 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   9.8     0.011        12     281     455 ..      70     267 ..      64     276 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
      AAA_13 281 feekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakie.............. 365
                 ++ +++ L +l+ +++++k  +++++ + + ++++ s+ +ed+e l+ e e  +e L +++ +l +K  ++ + + l +    +               
  CDO73345.1  70 VASQIAFLRNLKFQYLEQK--AKDQYVKTIVSDEAPSINAEDNELLRIENERKKEILSAAKARLAEKYSDVRTLAPLVEQGTCALvssigspltsrrpf 166
                 5566666666666666665..456666666666666667777777777777777777777777777776666655543333333234556666666666 PP

      AAA_13 366 .........sikklvaeineliakhNekvanleeekeeakkklelhlv..eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekql 453
                          +++++ a++ + i +     ++l ++  + +  + +  +      se++e++++++++++ +e++++++k+ ++e++ l+ e ++Lek++
  CDO73345.1 167 sltdytkaqALTQEAAALANKILDARLALTRLRQAHPHPRLTIPAANArlDAQVSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTV 265
                 666444444333333333333333333333333332222222222111222222344444455555555555555555555555555555555555544 PP

      AAA_13 454 rd 455
                 + 
  CDO73345.1 266 KA 267
                 43 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3      0.17   1.8e+02      38      62 ..     107     131 ..      75     138 .. 0.85
   2 ?   -0.6   0.1       1.8   1.9e+03      27      53 ..     174     200 ..     172     204 .. 0.64
   3 ?    9.6   2.6    0.0012       1.2      12      62 ..     215     265 ..     213     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.17
        ZapB  38 keenreleeeneqlkeereawqerl 62 
                 +e n+ l+ ene+ ke  +a ++rl
  CDO73345.1 107 AEDNELLRIENERKKEILSAAKARL 131
                 5667777788888888888888887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
        ZapB  27 ieeLkeeneelkeenreleeeneqlke 53 
                  ++L +e ++l++++   +  + +l++
  CDO73345.1 174 AQALTQEAAALANKILDARLALTRLRQ 200
                 456777777777777666666666666 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0012
        ZapB  12 kiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerl 62 
                 + ++ + ++++L  e++++ e++e  ke+ ++  +e+e+l+ er+ +++ +
  CDO73345.1 215 RLDAQVSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTV 265
                 5566788899999999999999999999999999**********9988765 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       9.4   9.9e+03     106     131 ..      20      45 ..      18      48 .. 0.66
   2 ?   10.7  11.1   0.00043      0.46      72     161 ..     177     273 ..     111     277 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9.4
       ATG16 106 elneelqkleeklkedeerlaeleae 131
                 +l+++l++ +  + ed++r + l++ 
  CDO73345.1  20 ALQAKLDAAKLHIVEDQTRFDTLQSA 45 
                 56677777777777777777777654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00043
       ATG16  72 qsakiqsleqklaqlreelaelyksr.......gelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDEls 161
                  +++ ++l++k++  r  l+ l +++          + rl +  +e+q+l+++l++ +er+++++++++a  +++++++ e +++ek+v++ qDE++
  CDO73345.1 177 LTQEAAALANKILDARLALTRLRQAHphprltiPAANARLDAQVSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQDEIQ 273
                 334444444444444444444444331111111456778888889999***********************************************97 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.8      0.76     8e+02      29      66 ..      74     122 ..      64     141 .. 0.51
   2 ?   10.7   6.3   0.00055      0.58      44      93 ..     207     274 ..     172     311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.76
      APG6_N  29 eeflkklkkekkeeek...........qdeeleeleeeleklekeeeel 66 
                  +fl++lk +  e+++           +  ++++ ++el ++e+e+++ 
  CDO73345.1  74 IAFLRNLKFQYLEQKAkdqyvktivsdEAPSINAEDNELLRIENERKKE 122
                 5666666644333222444556665443444444444444444444433 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00055
      APG6_N  44 k..................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelea 93 
                                     d+el++ +e++e++++  ++  +e ++l  er++le+ ++a + e ++
  CDO73345.1 207 LtipaanarldaqvsemqeLDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQDEIQD 274
                 35555555555544444448889999999999999999999999999999999999999999988876 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.8     0.092        97      38     115 ..      75     167 ..      62     206 .. 0.60
   2 ?    6.8   4.4    0.0077       8.1      53     111 ..     208     266 ..     175     308 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.092
        Fez1  38 aqlrelrakleekeeeikeleesleektlelevcenelqrkkse..aellrekvekleeelkelreelselsleeeeaa..............l 115
                 a lr+l+ +  e+ ++ + +++ +++ + +++  +nel r ++e  +e+l+    +l e+ +++r+ l+ l ++ + a               +
  CDO73345.1  75 AFLRNLKFQYLEQKAKDQYVKTIVSDEAPSINAEDNELLRIENErkKEILSAAKARLAEKYSDVRT-LAPLVEQGTCALvssigspltsrrpfS 167
                 557777777777778888888888899999999999998875541156777777778888888877.443333322222455565555555542 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0077
        Fez1  53 eikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleee 111
                 +i  ++++l+ +  e++++++elq  ++++e ++e+v++  +e+++lr e ++l+++ +
  CDO73345.1 208 TIPAANARLDAQVSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVK 266
                 44555555555556666666666666666666666666666666666554444333322 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.2     0.058        61      88     127 ..     108     147 ..      27     198 .. 0.70
   2 ?    6.1   2.0    0.0046       4.9      60     126 ..     207     273 ..     166     304 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.058
       Atg14  88 dklsqlkkeieekkkklaklsdklkkRrsdleslqnelee 127
                 ++ + l+ e+e kk+ l++ ++ l++++sd + l   +e+
  CDO73345.1 108 EDNELLRIENERKKEILSAAKARLAEKYSDVRTLAPLVEQ 147
                 5566788899999999999999999999988777655555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0046
       Atg14  60 dkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnele 126
                   i   +a+l+ + s++++l ++lq ++++++  k+++++  +++++l+ + ++  ++ ++ q+e++
  CDO73345.1 207 LTIPAANARLDAQVSEMQELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQDEIQ 273
                 3455556666777777777777777777777777777777777777776666655555555555554 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.13   1.4e+02      17      68 ..      22     107 ..      14     138 .. 0.55
   2 ?    8.1   0.5    0.0028         3       1      63 [.     225     294 ..     211     309 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.13
       Spc24  17 eselesleselaelkeeleeleeesee......keser.........vedetllklklYrsLGiel......................e 68 
                 +++l++ + +  e ++++++l++   +      +             v+ e++ ++ + r+L+++                        
  CDO73345.1  22 QAKLDAAKLHIVEDQTRFDTLQSALAKdpglvsE---GvagttdpaiVAAEVASQIAFLRNLKFQYleqkakdqyvktivsdeapsinA 107
                 4444444444445555555555555554444430...0344445555778888999999999999865554433333333333333332 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
       Spc24   1 kldnekfriakelsdleselesleselaelkeeleeleeeseekeservedetl........lklklYrsL 63 
                 +ld+e++++ + ++d+++ +++   e ++l+ e ++le+  ++ ++e+++ + +          l lYr L
  CDO73345.1 225 ELDDELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQDEIQDGR-VvglydwytASLALYRAL 294
                 5788888888888888888888888888888888888887777555543333.336666666999999988 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.5   3.7e+03     204     229 ..      21      46 ..      14      53 .. 0.52
   2 ?   -1.2   0.4      0.68   7.2e+02     196     214 ..     119     137 ..      69     151 .. 0.53
   3 ?   11.4   4.3    0.0001      0.11     149     244 ..     175     273 ..     169     276 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.5
        Spc7 204 lreelaelkaeieekkkelaelqeql 229
                 l+ +l+++k  i e +++ ++lq+ l
  CDO73345.1  21 LQAKLDAAKLHIVEDQTRFDTLQSAL 46 
                 34444444444444444444444433 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.68
        Spc7 196 idkeeLeelreelaelkae 214
                  +ke L +++ +lae  ++
  CDO73345.1 119 RKKEILSAAKARLAEKYSD 137
                 1233333333333333333 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.0001
        Spc7 149 egleedkelLekqeeeldellpeleeeka....eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqk 243
                 ++l+++++ L+++   +  +l +l++ +     ++ +  ++l +++ e++++d +eL+++ e+++++k+ +++  +e+++l+ ++++le+++++ ++++
  CDO73345.1 175 QALTQEAAALANKILDARLALTRLRQAHPhprlTIPAANARLDAQVSEMQELD-DELQAVNERVEDVKERVKAGAREVERLRVERADLEKTVKAGQDEI 272
                 56666666666666666666666666665454455566667777888888776.789999999999999999999999999999999999999998887 PP

        Spc7 244 s 244
                 +
  CDO73345.1 273 Q 273
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1198  (0.0668191); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 2446.19
//
Query:       CDO73346.1  [L=577]
Description: hypothetical protein BN946_scf185008.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-126  423.6   0.0   1.3e-126  423.4   0.0    1.0  1  DUF4246   Protein of unknown function (DUF4246)


Domain annotation for each model (and alignments):
>> DUF4246  Protein of unknown function (DUF4246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.4   0.0    7e-131  1.3e-126       3     452 ..      28     513 ..      26     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 423.4 bits;  conditional E-value: 7e-131
     DUF4246   3 vrEvamlklmeaitdkpdWekkvfdeeivakWkkealaaeeeel.......................lsekmadwcieELrdkakefeet.glvavlds 77 
                 + E+ m +++  i+ kpdW++kv+d+eivakW++e+++++ e +                       +s++++d++++EL+++a++ +e  g+  +  s
  CDO73346.1  28 LVELRMRRFSYLIRSKPDWWTKVHDPEIVAKWRQEMIHEDAEVVeelwggekrfehgngqklwprdpISDAQLDYIFDELKYEASRRDEAtGI-YA-TS 124
                 689********************************99888876699***************************************99776255.44.34 PP

     DUF4246  78 ssavvksDtlvseelkeeLkkavakLedvpeeekdwhpgsdeqvldlVhpslfplvYgrtrvlkdgv.....vkledalesagkGevlekkllskkfqw 171
                   av+++ +l++ +lke+L ka+a Ledvpeeekdwhpgs++qvldlVhpsl++l  g++ +l++       ++ ++ +++  +   ++++ ls  +qw
  CDO73346.1 125 IPAVYETRSLIPGHLKEQLIKAAAVLEDVPEEEKDWHPGSNKQVLDLVHPSLYCLRIGESCILDQADrsahvLTADEYIKQRPDLMSCSASELSMAYQW 223
                 79*************************************************************76663433333344444333333334589******* PP

     DUF4246 172 LPcevefsedgksvkitSYINnLhpkkhkelYsviekliekaiplwnevlakl.......keeereprri...........eeeep..eeeeeeeeede 250
                 LP+++++s +g+ v    YINn+hp+ h+el +++ +l+++++pl+++vl+++       +        +           e+++p  +e+++++e+d+
  CDO73346.1 224 LPTDFRVSLTGE-VDALGYINNVHPEYHRELKDIVTSLLARFVPLFERVLSDVlspprplA--------VkpnpgtwyshvEADDPtsQERDDDDEDDD 313
                 ********9998.**************************************9755554440........345555556666444443355555555666 PP

     DUF4246 251 eeeeereeeweeerrkvvlpepeksfsy.keeksvklkeeefkkkgLqVivklanieLtPekpeyeggswhveGqlnEhIvAtalyyydseNitesrLs 348
                 e+ ++r +e+ ++++++  p+pe  f++ +ee +++l   + k ++LqVi klani LtPe+p+yegg whveG+ nE+IvAt++yyy ++Nit+s+L+
  CDO73346.1 314 EAFDRRMDEYLRTKQWPLIPDPE-PFTPpSEEGRIEL---NLKGRTLQVIFKLANIVLTPENPRYEGGAWHVEGMANERIVATGIYYYACDNITPSDLD 408
                 8899999999999999****995.5554377778888...58889****************************************************** PP

     DUF4246 349 Frqkvdeeeakeeleyeqddhealeevfgiene.sslqelGsvetkegrllaFpNvlqhrvepfeLaDktkpGhrkilaLfLVDPhiriistanVppQq 446
                 Frq+v +++  ++++y++ d++ + + +g+  +    q l  ++++e++++aFpNv+qh+v+ f+L+D+++pG+rkila+fLVDP +ri st+ +ppQq
  CDO73346.1 409 FRQTVGKDNFGADMDYQNGDYKGWIAAYGLGPNlALSQVLWCIRAEEDKCVAFPNVYQHHVDGFQLEDPSRPGYRKILAFFLVDPFVRIHSTTDIPPQQ 507
                 ***999988899*******************974569************************************************************** PP

     DUF4246 447 kdwwae 452
                 +dw+a+
  CDO73346.1 508 RDWYAD 513
                 ***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4229.29
//
Query:       CDO73347.1  [L=533]
Description: hypothetical protein BN946_scf185008.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-06   26.8   0.0     0.0025   18.3   0.0    2.5  2  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.18   11.7   0.0    1.5  1  NIR_SIR_ferr     Nitrite/Sulfite reductase ferredoxin-like ha


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0017        15       5      65 ..     129     192 ..     126     241 .. 0.82
   2 !   18.3   0.0   2.8e-07    0.0025       1      57 [.     305     363 ..     305     380 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
  PseudoU_synth_1   5 lvGthdfgsfckqkqekkntvrtileaaieevsgeekell....vvtvkgsgFldhqVRamvgvl 65 
                      ++G  + g ++ q  +k +t+  +l  a+ +v   +++ +    +v++  ++++d++V+a ++v+
       CDO73347.1 129 FCGDGYNG-MQIQPDPKVRTIEGVLFDALIKVGAVSQDNSdnptKVKLGRAARTDAGVHAAGNVV 192
                      56666666.6666777788888888888888887766666788899999************9998 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.8e-07
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqek.kntvrtileaaieevsge.ekellvvtvkgsgFldhq 57 
                      Aa++++G+h+f +f+  +    +++ r +++++i+  + + + e++ v ++g++F+ hq
       CDO73347.1 305 AAQKYEGSHNFHNFTVGRDFRdRSCQRFLKSIEISDPAVYgDTEWIAVMLHGQSFMLHQ 363
                      8*************76655556999999999999975544135788**********998 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     2e-05      0.18      20      39 ..     293     311 ..     293     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
  NIR_SIR_ferr  20 ritaeqlraladiaekygsg 39 
                   rit+eql al++ a+ky+ g
    CDO73347.1 293 RITPEQLAALREAAQKYE-G 311
                   89***************9.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4368.59
//
Query:       CDO73348.1  [L=612]
Description: hypothetical protein BN946_scf185008.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-108  361.4   0.0   4.3e-108  361.0   0.0    1.1  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.0   0.0  2.4e-112  4.3e-108       1     286 [.       6     293 ..       6     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 361.0 bits;  conditional E-value: 2.4e-112
                 HHHHHHT.SS-EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT- CS
       MTHFR   1 kleqaleegkalisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGi 99 
                 k+eqa++e++++ sfE+fpP+t++g +nLl+ri+r+ +++p+f+d+Tw+agg t+elt +++k+ q+ +g+e+++hlTct ++ke++d al++ak++G+
  CDO73348.1   6 KIEQAAKEDRVWWSFEYFPPRTAQGLQNLLDRIERMRALGPEFIDITWNAGGRTSELTAELVKTCQKLIGIETCMHLTCTGMPKEKVDIALREAKQAGC 104
                 689999********************************************************************************************* PP

                 -EEEEE--S--TT-GGC---S----SHHHHHHHHHHHHCGGSEEEEEE-TT--T.T-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHC CS
       MTHFR 100 rnilALrGDppkdedkweekeeefkyaldLvrlireeygdlfdigvaaYPevhp.eaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvrea 197
                 rn+lALrGDpp +++ we  e++f+y +dLvr+ir +ygd+fdi+va+YP+ +    ++ e++++ylk+KvdaGA+fi tQ+f+dvd f+++v++ r+a
  CDO73348.1 105 RNVLALRGDPPVGKE-WEPVENGFRYGVDLVRYIRAQYGDYFDISVAGYPQTQRlPPDEREREMQYLKDKVDAGANFIFTQMFYDVDMFIEWVQAARAA 202
                 *************87.**********************************988846666999************************************* PP

                 T-SS-EEEEE---SSHHHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT..--EEEEE-TT--HHHHHHHHHC CS
       MTHFR 198 gidipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaeg..vkglHlytlnkekaileileql 286
                 gi++pi+pgimpi++++ +++++ l+k+++Pq++ld+le+ k++de+v++ig++l+ ++++++la    +kglH+yt+n+ek  + +le+l
  CDO73348.1 203 GITVPIVPGIMPIQTWNGFQKATMLAKITVPQAFLDQLEPHKNNDEKVREIGTKLVADLCRRILAADigIKGLHFYTMNLEKGCRLLLEEL 293
                 ***************************************************************987556*************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4583.60
//
Query:       CDO73349.1  [L=810]
Description: hypothetical protein BN946_scf185008.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-33  115.2   0.0    5.3e-33  114.4   0.0    1.4  1  PH_12       Pleckstrin homology domain
    2.5e-28   99.4   0.1    4.2e-28   98.7   0.1    1.3  1  ELMO_CED12  ELMO/CED-12 family
    1.9e-21   76.6   0.0    9.8e-21   74.3   0.0    2.2  1  DUF3361     Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   8.8e-37   5.3e-33       1     133 [.     604     747 ..     604     748 .. 0.88

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 8.8e-37
       PH_12   1 vkeqRincLleGawfpk........pgesgkrek.....kkwrfvkLspnrkvLhygdfeekspqdpsleeltekidlsdisevksgkea..phskesg 84 
                 v++qRi+cLleGawf +        p       +     ++wrf +L++  k+Lhy d + k+p++++le+l+e+i++s isev +g++a  ph+++++
  CDO73349.1 604 VRQQRIHCLLEGAWFMNgiplatndPRD-----TirrptRPWRFLRLDAGLKYLHYVDSAVKFPVRKGLEDLPERIEVSMISEVATGTCApfPHIQRDQ 697
                 79***************98654444334.....255566**************************************************9778888777 PP

       PH_12  85 kssssl..skksssklsfslitlskekellelvasseseaaeWlDGLsmLl 133
                  +      s   +s lsfsl++ ++  +l++ +a++++++a W+DGL+mL+
  CDO73349.1 698 ADIPLGssSPMLASPLSFSLLS-TSGGSLADQIAPDQARWADWTDGLNMLR 747
                 6555445578889*********.***************************7 PP

>> ELMO_CED12  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.1     7e-32   4.2e-28      15     175 ..     388     533 ..     375     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 7e-32
  ELMO_CED12  15 npeherlLkelwsalypdepeinstksrisekWkklGFqgedPatDFrgtGlLgLenLlyfaenheeefqkllsessrrpseeeypfavasinvtslll 113
                 +p h+++L+ +w+ +  +e +++   + ++ kW+klGF++ed   +Fr +G+LgL++L yf+e+ ++   k+++e+ +r++e ++p+  as++vt ll 
  CDO73349.1 388 EPLHNQALQFIWEKSKLEEGRED---AITPIKWRKLGFETEDIGHEFREVGVLGLDCLKYFVEKDPDYWAKVVQEQLSRSEERRCPIGKASNEVTDLLA 483
                 578**********8886666665...899********************************************************************** PP

  ELMO_CED12 114 elleiektdeedeeeqkdklktnntkllssnlnafeelfsvlfllfdslWkekkatimdfnk 175
                 e+++i            ++   ++ +++++++  f +++  +++ f ++W+e++a+  df++
  CDO73349.1 484 EHWAIYA---------PGY---STSTTFQPFFLNFPKVHALALHFFLRMWNESGASTDDFPR 533
                 **99933.........222...34578*********************************86 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   1.6e-24   9.8e-21       2     150 ..     150     330 ..     149     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.6e-24
     DUF3361   2 FAqeFisrdGlkllvkiveegkesgeilayaLt..afleLmdhgivsWdtlsdeFikkiasivnksaadasilqrslaiLesivlnss........... 87 
                 FAqeF++rdGl+ lv+++ ++  +g+ila   +   +++Lm+    +W +l+++Fi k+++i+++++   +++++++aiL+++v ++            
  CDO73349.1 150 FAQEFLQRDGLRELVDVIYNS--HGNILAVSKHriRMVNLMEL-DYGWANLDNAFIFKVVQILSSEQSRLNVCRPATAILKRLVEADPssasglnaatt 245
                 ********************9..88999887652268******.89***************************************99988999999999 PP

     DUF3361  88 .................elyelvekevt.....lesLiehLqssnqeiqtnalaLlnALllkaddskrkelaetlskkqlrkvil 150
                                    +++v ++++     le+++++L s+++++  ++++L+n+Ll++a+d ++ e+ + l++ ++rk+++
  CDO73349.1 246 astskgppsptpgsvyrYGFDVVFEQMRkekglLETVVNRLGSADTTMALYSMMLINSLLAHASDPRWDEFIAELERLNVRKAVI 330
                 9999999999999887544778888887888899************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5817.17
//
Query:       CDO73350.1  [L=802]
Description: hypothetical protein BN946_scf185008.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5999.78
//
Query:       CDO73351.1  [L=487]
Description: hypothetical protein BN946_scf185008.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-07   30.7   0.0    2.7e-07   29.9   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.5e-11   2.7e-07      15     179 ..      84     249 ..      72     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.5e-11
  Fungal_trans  15 lhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdra 111
                   lh + fl+    ++     ++  +ll++++ +Ga +s++++ + + ++   +       l +        ++p+  l++ q+ ++l+ y  + s++ 
    CDO73351.1  84 LHIDRFLDRV-FSSGATPSNSLRILLNVVYLVGAKLSSNPQVQAQEQAYLAR------ALHHLPAA--LPEDPRGALYVMQAEVILANYFYNASRQL 171
                   6666666666.333333344556899*****************977777655......33333333..34677777********************* PP

  Fungal_trans 112 lherhhgvavr..larslgLhrnpsyvgkks........lwklweeeaes..rrRlwwaaFylDktialklGrpp.lldds 179
                      +h++ av+  +a +l++ r   ++ +              ++++ e+  r + +w++F+lD+++a+ +G  p + dd+
    CDO73351.1 172 EGAYHMNAAVSiaMASKLHMIRSARRSRSAAdtttyrlpP---PADTLEEgeRINGFWTVFILDRCWAVATGSAPaFTDDE 249
                   ***********66777777777666666555***775432...3444555115566*****************99765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4002.29
//
Query:       CDO73352.1  [L=559]
Description: hypothetical protein BN946_scf185008.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-16   60.5   0.0    1.3e-07   30.6   0.0    2.3  2  Actin        Actin
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.058   13.8   0.0    2.0  2  FtsA         Cell division protein FtsA
      0.034   13.3   0.1        2.1    7.4   0.0    2.1  2  Actin_micro  Putative actin-like family


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.2e-11   1.3e-07     130     194 ..     109     178 ..      93     199 .. 0.87
   2 !   27.5   0.0   1.9e-10   1.1e-06     317     394 ..     461     547 ..     422     549 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.2e-11
       Actin 130 ksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellss.....knvev 194
                 k+   + + +g s+++vvD+Ga +ts++ V dG+v+    + +++gG+++te l  ll++     +++++
  CDO73352.1 109 KESLAATYGAGISNACVVDMGAVKTSIACVDDGMVIADTRMVLSMGGNDITEFLYVLLEKigfpyRDINL 178
                 6677899************************************************999985555554555 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 1.9e-10
       Actin 317 dvdlrpeLlanivvtGGnsllpglteRlekelaql........askgvkvkiiapee..erkysaWiGGSiLAslgtfqqlwvskqEY 394
                 d ++r+  l+ ++v+GG++l+pg+   le+    +        +++  kv+ii p++  ++ + +W G+++L++++ + +lw++ +++
  CDO73352.1 461 DEKIRKY-LQAVLVVGGTALVPGMVHALESRCIPTlqaiatplVPNMEKVQIIPPPKdvDPAILVWKGAAVLGKMDGVADLWITAADW 547
                 5566654.689************9998888765555666888888888*******999**************************8887 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.8e-06     0.058       1      35 [.     124     160 ..     124     188 .. 0.87
   2 ?   -0.8   0.0      0.36   2.1e+03      70      85 ..     432     490 ..     251     507 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.8e-06
                 EEEEE-SSSEEEEEEETTEEEE..EEEES--HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvh..lrvigvggngitk 35 
                 ++vD+Ga kt++a ++dg +++    v+ +ggn it+
  CDO73352.1 124 CVVDMGAVKTSIACVDDGMVIAdtRMVLSMGGNDITE 160
                 79*****************88884455677*****97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
                 H...........................................GGGGSTTHHHHHHHH CS
                 x...........................................xxxxxxxxxxxxxxx RF
        FtsA  70 s...........................................ggsalpnleelaera 85 
                 +                                           g++ +p++++++e+ 
  CDO73352.1 432 EfepidvsfeasmlpldvaifnsaraaggdekirkylqavlvvgGTALVPGMVHALESR 490
                 04444444444444444555555555555555555555666677777777777777766 PP

>> Actin_micro  Putative actin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0046        28     155     191 ..     110     147 ..      85     159 .. 0.81
   2 ?    7.4   0.0   0.00036       2.1     323     354 ..     517     548 ..     466     551 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0046
  Actin_micro 155 esLalclglgiqsaiviseyekhttvslveDyvl.lds 191
                  esLa   g gi++a v++    +t +  v+D ++  d+
   CDO73352.1 110 ESLAATYGAGISNACVVDMGAVKTSIACVDDGMViADT 147
                  79*****************9999********6540555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00036
  Actin_micro 323 eeakessilrgakvlkelevsKelWlTDkEWn 354
                  +     ++++ga vl +++   +lW+T  +W 
   CDO73352.1 517 DVDPAILVWKGAAVLGKMDGVADLWITAADWV 548
                  444456799********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3654.08
//
Query:       CDO73353.1  [L=379]
Description: hypothetical protein BN946_scf185008.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00064   19.5  12.8     0.0012   18.7  12.8    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00087   19.3   8.5    0.00087   19.3   8.5    2.0  2  zf-RING_UBOX  RING-type zinc-finger
     0.0059   16.4  14.3       0.21   11.5  14.8    2.4  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.014   15.8  15.1      0.027   14.8  15.1    1.5  1  zf-RING_2     Ring finger domain
      0.015   15.5  11.0      0.035   14.3  11.0    1.7  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
      0.073   12.6   5.8       0.09   12.3   5.8    1.1  1  Exonuc_VII_L  Exonuclease VII, large subunit
      0.098   12.2   8.9       0.14   11.7   8.9    1.1  1  HAUS-augmin3  HAUS augmin-like complex subunit 3
       0.11   11.9  21.0       0.27   10.6  21.0    1.6  1  DUF3552       Domain of unknown function (DUF3552)
       0.24   11.5   4.8       0.65   10.1   4.8    1.7  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.26   11.2   7.8       0.54   10.2   7.8    1.6  1  zf-RING_6     zf-RING of BARD1-type protein
        0.4   10.9   5.5       0.81    9.9   5.5    1.6  1  zf-RING_10    zinc RING finger of MSL2
       0.76   10.1  11.9          2    8.8  11.9    1.7  1  zf-rbx1       RING-H2 zinc finger domain
        1.6    8.7  12.6        6.4    6.7  12.6    1.9  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
        2.2    8.6  11.3        3.3    8.0  11.3    1.2  1  OmpH          Outer membrane protein (OmpH-like)
        2.3    7.5  11.0        3.2    7.0  11.0    1.1  1  DUF4407       Domain of unknown function (DUF4407)
        2.7    5.8   3.2        3.5    5.4   3.2    1.1  1  V_ATPase_I    V-type ATPase 116kDa subunit family
        2.7    8.1  14.0        1.7    8.7   9.7    2.2  2  Nup54         Nucleoporin complex subunit 54
        3.1    7.9  13.1        7.9    6.5  12.1    2.1  1  zf-RING_5     zinc-RING finger domain
        5.8    6.6  12.8        7.8    6.1  12.4    1.3  1  SHE3          SWI5-dependent HO expression protein 3


Domain annotation for each model (and alignments):
>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  12.8   1.2e-06    0.0012       1      41 []     204     255 ..     204     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC.........TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilks.........rkkvkCPlC 41 
                 C++C+e+++ p    +  C+HsfC  Ci+k+            +   +CPlC
  CDO73353.1 204 CSLCFEVMACPYslNPGRCGHSFCALCILKWCFAavhrgcgywHDPLECPLC 255
                 ***********9777888***************999999999999999***9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   8.5   9.3e-07   0.00087       1      28 [.     204     242 ..     204     253 .. 0.69
   2 ?   -0.9   0.1       1.8   1.7e+03       1       8 [.     252     260 ..     252     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.3e-07
  zf-RING_UBOX   1 CpIClelftdP.lvlp..CGHtFCreCl..w......el 28 
                   C+ C+e++  P  + p  CGH+FC  C+  w        
    CDO73353.1 204 CSLCFEVMACPySLNPgrCGHSFCALCIlkWcfaavhRG 242
                   *********995442456**********87655444444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.8
  zf-RING_UBOX   1 CpICl.elf 8  
                   Cp C+ elf
    CDO73353.1 252 CPLCRaELF 260
                   ****97766 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5  14.8   0.00022      0.21       2      30 ..     204     234 ..     203     255 .. 0.83
   2 ?    1.0   0.6      0.42     4e+02       1      15 [.     251     265 ..     251     267 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
  zf-C3HC4_2   2 CpiCldmlkdpsvvt..pCgHvfCqkCilrs 30 
                 C +C++++  p  ++   CgH+fC+ Cil++
  CDO73353.1 204 CSLCFEVMACPYSLNpgRCGHSFCALCILKW 234
                 ***********9999888***********98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.42
  zf-C3HC4_2   1 kCpiCldmlkdpsvv 15 
                 +Cp+C ++l  +s+v
  CDO73353.1 251 ECPLCRAELFYTSDV 265
                 577777766655555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8  15.1   2.9e-05     0.027       2      44 .]     203     256 ..     202     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw.lrssst..........CPlCr 44 
                 +C++C+e +  ++s+    CgH+f+  C+ +w ++  ++          CPlCr
  CDO73353.1 203 TCSLCFEVMACPYSLNPGRCGHSFCALCILKWcFAAVHRgcgywhdpleCPLCR 256
                 7****98887666666556*************74444446799**********9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  11.0   3.7e-05     0.035       1      42 []     204     255 ..     204     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
  zf-C3HC4_4   1 CPiCldYLekPvsle...CGhsfClsCisslqkepdgeq.......llCplC 42 
                 C  C + +  P sl+   CGhsfC  Ci +++  +   +       l CplC
  CDO73353.1 204 CSLCFEVMACPYSLNpgrCGHSFCALCILKWCFAAVHRGcgywhdpLECPLC 255
                 999***********8888**************98877667778788888888 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.8   9.5e-05      0.09     149     253 ..      62     174 ..      35     197 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.5e-05
  Exonuc_VII_L 149 leelerrlekaikrll.eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k.........ekleekkerlkk 234
                   ++ le+  ++ +kr+  + k    ++la+rlk+ e++l+r++ +l++ e+ + +  +++l++k+e l++ +e+l k         +++e+++++l  
    CDO73353.1  62 VDVLEETPSRLTKRRRsSAKDDASDSLANRLKDTEKILHRRELELKKREAAVVK-KQNALQRKEESLSRERESLlKrketllakaRDVESQARDL-- 155
                   444444444444444313333455567777777777777777777776666666.5666677777777666666544533332222222222222.. PP

  Exonuc_VII_L 235 lkerle.....lleekkerleele 253
                        +     ll+++k  ++++e
    CDO73353.1 156 -----SargraLLAQEKALAKQAE 174
                   .....2223332222222222222 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   8.9   0.00015      0.14      60     163 ..      76     179 ..      61     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  HAUS-augmin3  60 dlkqedvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeakq 156
                   + ++ + +++++ ++ ++++++ L +   eL+k +a   k+ n Lq    sl++e+++l +++++   k ++ +++ r  +a+ +a+L q  + akq
    CDO73353.1  76 RRSSAKDDASDSLANRLKDTEKILHRRELELKKREAAVVKKQNALQRKEESLSRERESLLKRKETLLAKARDVESQARDLSARGRALLAQEKALAKQ 172
                   4444566666777888888999999999999999999999999999999999999999999999999999999999999999999999999998777 PP

  HAUS-augmin3 157 laeyfee 163
                      + ++
    CDO73353.1 173 AEAQATA 179
                   6665554 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  21.0   0.00029      0.27      56     132 ..      82     158 ..      62     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
     DUF3552  56 leakeeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleel 132
                  +a + + +  +++ek l++r+ el++ e  +++k+++L+rkeesl++  esl ++++ l +k +++e++ ++l++ 
  CDO73353.1  82 DDASDSLANRLKDTEKILHRRELELKKREAAVVKKQNALQRKEESLSRERESLLKRKETLLAKARDVESQARDLSAR 158
                 46777788888999999999999999999999999999999999999999999999999999999999998887754 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.8   0.00069      0.65      44      80 ..     212     258 ..     181     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00069
                 TS-..EEEBTTS-EEEHHHHHHHHHHHSTSS........B-TTTSSB CS
  zf-ANAPC11  44 dcp..lvlGkckhnfhlhcilkwletetskg........lcpmcrqt 80 
                  cp  l  G+c h+f + cilkw  +   +g         cp+cr +
  CDO73353.1 212 ACPysLNPGRCGHSFCALCILKWCFAAVHRGcgywhdplECPLCRAE 258
                 4551155699*************988877763344444458888876 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.8   0.00057      0.54       1      41 [.     195     238 ..     195     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00057
   zf-RING_6   1 larlekllrcsrctdilrepvcl..ggcehifcsncisd.cfgs 41 
                 l+ le  + cs c +++  p  l  g c h fc+ ci   cf +
  CDO73353.1 195 LSHLEDHFTCSLCFEVMACPYSLnpGRCGHSFCALCILKwCFAA 238
                 5789999*************9997789*********96449975 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.5   0.00086      0.81       2      31 ..     203     232 ..     202     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00086
  zf-RING_10   2 sCvvCckLLvdPlepkekeCqHyvCrlCvg 31 
                 +C+ C +++  P++ +  +C+H+ C lC+ 
  CDO73353.1 203 TCSLCFEVMACPYSLNPGRCGHSFCALCIL 232
                 7***************************85 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.9    0.0021         2      25      55 .]     213     256 ..     196     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0021
     zf-rbx1  25 cpvvl..GeCgHaFHlhCiskWlkt...........rkvCPlcr 55 
                 cp  l  G+CgH+F   Ci kW                +CPlcr
  CDO73353.1 213 CPYSLnpGRCGHSFCALCILKWCFAavhrgcgywhdPLECPLCR 256
                 55555449**************9888899999998777899997 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  12.6    0.0068       6.4       3      46 ..     202     258 ..     200     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0068
                 SB-TTTSSS...BS-EEETTEEEEEE-HHHHHHHHH...........TT-B-TTT--B CS
  zf-C3HC4_3   3 eeCviCler...prnvvllpCgHlvlCeeCaekllk...........rkkkCpiCrrp 46 
                  +C++C+e    p +    +CgH  +C  C  k+                +Cp+Cr++
  CDO73353.1 202 FTCSLCFEVmacPYSLNPGRCGHS-FCALCILKWCFaavhrgcgywhDPLECPLCRAE 258
                 58******732344455556****.99988887764577779999999999****986 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  11.3    0.0035       3.3      15     101 ..      93     178 ..      79     187 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka....qelqkkqqellkpildkinka 101
                 ++++++  + e + kk++a++ +k+++lq+++e l ++ ++l   ++++ l +k ++++  q+++     + l +++++l k+   +++++
  CDO73353.1  93 KDTEKILHRRELELKKREAAVVKKQNALQRKEESLSRERESL--LKRKETLLAKARDVES-QARDLsargRALLAQEKALAKQ--AEAQAT 178
                 445555555555667777777777777777777777666664..3444445555555555.2222224445555555555554..444443 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  11.0    0.0034       3.2     154     262 ..      75     181 ..      47     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0034
     DUF4407 154 arldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarlealdr 252
                 +r++ ++++a + l +  +++++  ++++ + k+++a+  ++q++l+  +++   + ++++l +++++l a++++ +++ ++ +a  + lla+++al +
  CDO73353.1  75 RRRSSAKDDASDSLANRLKDTEKILHRRELELKKREAAVVKKQNALQRKEES--LSRERESLLKRKETLLAKARDVESQARDLSARGRALLAQEKALAK 171
                 445667777777888877888888999999999999************9999..********************************************* PP

     DUF4407 253 ltkedatall 262
                  ++++ata++
  CDO73353.1 172 QAEAQATAAA 181
                 9999997765 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.2    0.0037       3.5      30     113 ..      90     173 ..      53     198 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0037
  V_ATPase_I  30 rrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekak 113
                  r+ + e+ l+  e e++k e av+k+++a +++e++ ++e ++l ++ e+l ++ +++++++++l+++ + l+ +++ l k +
  CDO73353.1  90 NRLKDTEKILHRRELELKKREAAVVKKQNALQRKEESLSRERESLLKRKETLLAKARDVESQARDLSARGRALLAQEKALAKQA 173
                 233344444444444444444444444443344444444444444444444444444444444444443333333333333322 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.7    0.0018       1.7      77     128 ..      99     150 ..      70     158 .. 0.84
   2 ?    1.6   0.4      0.29   2.7e+02      98     119 ..     155     176 ..     145     194 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS-HHH CS
       Nup54  77 akkrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqlndpaq 128
                 + +r+ el++R   +++k++ l+++  +l+ e e+l +r etl a+ +d ++
  CDO73353.1  99 LHRRELELKKREAAVVKKQNALQRKEESLSRERESLLKRKETLLAKARDVES 150
                 57899****************************************9997443 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.29
                 HTT-SS---SSHHHHHHHHHHH CS
       Nup54  98 lrsrgyaldaeEeelrarletl 119
                 l+ rg+al a+E++l+++ e+ 
  CDO73353.1 155 LSARGRALLAQEKALAKQAEAQ 176
                 4678999999999999999843 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.1    0.0083       7.9       2      43 ..     204     256 ..     203     257 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0083
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll...........ekeavCpiCr 43 
                 C+ Cfe +         +CgH+fC  C+ k             + + +Cp+Cr
  CDO73353.1 204 CSLCFEVMACPYSLNPGRCGHSFCALCILKWCfaavhrgcgywHDPLECPLCR 256
                 777888774444455578**********9988899*****************8 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.4    0.0082       7.8      21     101 ..      91     178 ..      81     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CS
        SHE3  21 qLtqqsqeLleklelaqkkeskflenlaslkhENdnLs....slLkRKer...rlkdlekelselkesveelklekkqlkkrlenssa 101
                 +L+ +++ L ++    +k+e+ ++ + + l+   + Ls    slLkRKe    + +d+e++  +l+ +   l +++k+l k++e +  
  CDO73353.1  91 RLKDTEKILHRRELELKKREAAVVKKQNALQRKEESLSrereSLLKRKETllaKARDVESQARDLSARGRALLAQEKALAKQAEAQAT 178
                 6888888888888889999999999999999999999766668******6444789**************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1441  (0.0803726); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 2303.53
//
Query:       CDO73354.1  [L=209]
Description: hypothetical protein BN946_scf185008.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-32  113.4   0.0    1.5e-26   93.3   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.02   15.0   0.1      0.037   14.2   0.1    1.4  1  DUF3792       Protein of unknown function (DUF3792)
      0.068   12.9   0.0      0.093   12.5   0.0    1.2  1  DUF4922       Domain of unknown function (DUF4922)


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   2.5e-30   1.5e-26      35     162 ..       7     123 ..       3     124 .. 0.96
   2 !   19.8   0.0   6.1e-08   0.00036     243     292 ..     123     170 ..     122     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 2.5e-30
                   EE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTT CS
  Aldo_ket_red  35 fDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeG 131
                    DtA++Y   ++ee+ G+a+ +s+  re++ i+tK         sg    +i++s+++slk Lg+dyvDl+l+H p  + p+i  +++ +e+l+k G
    CDO73354.1   7 TDTAQAY---RNEEEAGKAIRESGLAREDLYITTKF--------SGRDGLDIETSIQNSLKFLGVDYVDLYLIHHPRLAQPDIPTAWAKMEKLKKDG 92 
                   6******...**************************........666666*********************************************** PP

                   SEEEEEEES--HHHHHHHHHTTT--EEEEE- CS
  Aldo_ket_red 132 kiraiGvSnfsveqlekakkkkkvkivavqv 162
                   ++++iGvSnf v+ l+ +++ + +k+va+q 
    CDO73354.1  93 LVKSIGVSNFGVAELQTLLASAQIKPVANQP 123
                   *****************************97 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 6.1e-08
                   HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 243 laqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   ++q+ l++a   +++++v+ ++++ e+le  l+a +l+l++ +va++d++
    CDO73354.1 123 PEQVLLAWAK--SKGVVVVTSSTKKERLEGYLAAGDLELTAADVAAIDAA 170
                   79********..9**********************************986 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   6.2e-06     0.037      47      85 ..     165     203 ..     159     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
     DUF3792  47 lsvfigGflagkkakkkgllnGllvGllyflillllsll 85 
                 +++ ++G + ++++k + ++nG+++G+l+f+ ++ + + 
  CDO73354.1 165 AAIDAAGAIGARRQKVREFVNGVAAGALLFAAVFGVCSY 203
                 5666799***********************998877665 PP

>> DUF4922  Domain of unknown function (DUF4922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05     0.093      94     167 ..     104     178 ..      79     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
     DUF4922  94 aelfeklyealpveegeeEpmlNilawyeegelvvvvfpRkkhRpecYyaegekklliS.PgavdmaGliitpre 167
                 ++ +++l+++ +++  ++ p   +law +++ +vvv    kk R e Y a+g+ +l+    +a+d aG i + r+
  CDO73354.1 104 VAELQTLLASAQIKPVANQPEQVLLAWAKSKGVVVVTSSTKKERLEGYLAAGDLELTAAdVAAIDAAGAIGARRQ 178
                 5567889999999999999**********************************99987626999****9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1435.54
//
Query:       CDO73355.1  [L=576]
Description: hypothetical protein BN946_scf185008.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-62  209.2   0.0    1.2e-61  208.7   0.0    1.2  1  ORC5_C    Origin recognition complex (ORC) subunit 5 C-termin


Domain annotation for each model (and alignments):
>> ORC5_C  Origin recognition complex (ORC) subunit 5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.0   6.8e-66   1.2e-61       1     283 [.     219     570 ..     219     572 .. 0.84

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 6.8e-66
      ORC5_C   1 ihFppytreevleilskekps..........ngeeeeeeataklyerFvslvydslvkptardipelrsiceklWprFvaPildgel............ 77 
                 i++p +++  +l+ l++ +p+           + ++++ ++++ly++F++++y+++++ t +d+ el +i+++ Wp Fv+P+ld +             
  CDO73355.1 219 IDVPFLSKPAILDALASAFPEppsanaiasnADLDVYSPVLKPLYAHFLATLYSICAPFT-HDPAELAYIAAARWPGFVQPVLDAHRgrmhrshpdadd 316
                 5677889999999999666666678899988888888899********************.***********************999888888777777 PP

      ORC5_C  78 ..................kpedfsrl.................laanralfrdqgesalaeelv...........ektaasssassasskssssklpeL 130
                                   +                        +a+++ ++r + ++ +a++++           ++ +a  +++ ++++ +s  l  L
  CDO73355.1 317 pmndmaeeaeeddshelsP------PsedvrlrltrlftpsltAALESLYPRLTHAALWARTHApppdllavspaNAGQALYAHTANAQRGTSAGLEAL 409
                 6666666555444444432......03333336566688888888899999999999**99999*********995555555555555566777899** PP

      ORC5_C 131 pylaklLLiAAYLASynpprlDlrlFsktsgkskkrrkrrkgssqkskekakskkrkisqkllgPkaFpLeRllAIfqailpeeeaepseeess.e... 225
                 p++ak++L+AA+LAS+np+r+Dlr+F+++ +++++rr+r+  +++k k  ++ ++ ki+q+llgP +FpL+Rl+AI+ ++l+e++ae+++ +++ +   
  CDO73355.1 410 PRMAKFVLVAAFLASTNPARSDLRMFGRGPDERTRRRRRKVATPRKPKPGTTGTAVKIPQRLLGPTTFPLDRLIAILGVLLEENDAETRPVAPQySlpg 508
                 ******************************877555566666666666666889999*****************************9999988872567 PP

      ORC5_C 226 ......tlsvdvlsqiatLvslrllvrtsaaagdkldgsekwrvnVswevirelArsvgfelee 283
                        ++v++++q+ +L+s+rllvrts+   d+ldg+ ++++ +++e++ +lAr++g+ l++
  CDO73355.1 509 eytemeISRVAIYAQVMELTSMRLLVRTSPP--DRLDGPPTFKCGIGYELAGKLARDLGIMLND 570
                 788999*************************..***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3829.86
//
Query:       CDO73356.1  [L=490]
Description: hypothetical protein BN946_scf185008.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.025   15.0   0.1        4.1    7.9   0.1    2.6  2  DUF4140       N-terminal domain of unknown function (DUF4140)
        3.1    8.1   8.6       0.38   11.1   2.3    2.7  3  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0061        54      49      95 ..     332     377 ..     319     379 .. 0.79
   2 ?    7.9   0.1   0.00046       4.1      66      96 ..     402     432 ..     381     434 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0061
     DUF4140  49 ildvqvervpnreaeeeelkalraeleeledelaaledelaaaearl 95 
                 i + ++++ p+ ++ + el  +r+e+++l+++ ++  +el+aa +++
  CDO73356.1 332 IGGSSTSTAPRVPTLR-ELWDIRREITALQARGRNTAAELRAAGQQI 377
                 5555666655555555.5999******************99998886 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00046
     DUF4140  66 elkalraeleeledelaaledelaaaearla 96 
                 ++++l+ae+ +l+++l++ +++++ aea+l+
  CDO73356.1 402 KMRELEAEILSLRKQLTQETNARKLAEATLR 432
                 689************************9986 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.28   2.5e+03      18      38 ..     203     225 ..     199     248 .. 0.68
   2 ?   -2.6   0.0      0.81   7.2e+03      29      34 ..     271     276 ..     256     313 .. 0.52
   3 ?   11.1   2.3   4.2e-05      0.38       8      35 ..     405     433 ..     401     451 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.28
  Lzipper-MIP1  18 erLqeeeklrraLekal..ssss 38 
                   ++L++  +++++L+ka   s+++
    CDO73356.1 203 MQLSQSSAIQSLLQKATpgSAAP 225
                   58999999999999999653333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.81
  Lzipper-MIP1  29 aLekal 34 
                   a  +a+
    CDO73356.1 271 ASAQAV 276
                   222222 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 4.2e-05
  Lzipper-MIP1   8 sLeqeveqLqerLqeeeklrraLekal.s 35 
                   +Le e++ L+++L +e++ r++ e +l +
    CDO73356.1 405 ELEAEILSLRKQLTQETNARKLAEATLrA 433
                   8*********************9999932 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3241.75
//
Query:       CDO73357.1  [L=622]
Description: hypothetical protein BN946_scf185008.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.055   13.7   0.9       0.92    9.7   0.9    2.5  2  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.9   5.1e-05      0.92      40      88 ..     193     241 ..     190     257 .. 0.84
   2 ?    0.8   0.0     0.032   5.7e+02      39      78 ..     374     413 ..     364     431 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 5.1e-05
      HemY_N  40 llrlparvrrwrrrrrerkarealseGlialaeGdfarAekaaakaakl 88 
                  +++p+++rr rrr+r+r a++  +++ ++ a  + a    +a++ a+ 
  CDO73357.1 193 SFNVPSSARRKRRRKRNRSAQDTRRTAYVDAARTETANGSADAVDEASA 241
                 6899************************999998888777777665554 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.032
      HemY_N  39 lllrlparvrrwrrrrrerkarealseGlialaeGdfarA 78 
                  l+++ + vrr  ++  ++ ++++ls++ +al  ++ +  
  CDO73357.1 374 ILIGFITYVRRHLQHVVRKFKQTHLSHAALALVLERGRPV 413
                 56777788999999999999***********998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4006.56
//
Query:       CDO73358.1  [L=410]
Description: hypothetical protein BN946_scf185008.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-24   85.3   0.1    9.6e-24   84.3   0.0    1.4  2  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.25   4.6e+03     116     135 ..      25      44 ..      11      56 .. 0.73
   2 !   84.3   0.0   5.3e-28   9.6e-24     149     290 ..     220     352 ..     192     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.25
  Bestrophin 116 lvlllvlffralssrvrkrf 135
                 +++l+ +f+ a+++ +r+++
  CDO73358.1  25 VINLIEAFAVAVKHYLRGEE 44 
                 47788899999999999875 PP

  == domain 2  score: 84.3 bits;  conditional E-value: 5.3e-28
  Bestrophin 149 eeeakilenkywvplqWavsllrrlaerlkelakegrikddqalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldsei 247
                  + + +  +++++pl+    +   l++++++l+++g+i  ++a ++l + ln+l ++l++leri +tpiP++Y + +  +++ly+ll            
  CDO73358.1 220 AKLRSRTVTTHNLPLE----ISLYLSSYIAALQDRGAIPPPTA-TNLLNALNQLVDALTGLERILTTPIPFSYRVQLWSVTVLYCLL------------ 301
                 33333344899*****....55555679************996.69*****************************************............ PP

  Bestrophin 248 dlylPvftllq............faffffGllkvaeqlenPFGedddDlelnali 290
                    lP f+++             ++f+ffG+l  +e++enPFG+d++Dl l+ + 
  CDO73358.1 302 ---LP-FQIWSalkwltipatclLSFIFFGFLVAGEEIENPFGYDKNDLNLDHFT 352
                 ...99.99999999999999999889*************************9883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2929.55
//
Query:       CDO73359.1  [L=655]
Description: hypothetical protein BN946_scf185008.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-21   74.1   0.0    1.6e-20   73.0   0.0    1.6  1  HGTP_anticodon  Anticodon binding domain
    6.2e-10   39.3   0.0    1.9e-09   37.8   0.0    1.8  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.8e-24   1.6e-20       1      93 [.     539     630 ..     539     631 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.8e-24
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     +v+++pl+  + e+ +++k++ ++Lr+agi   +ddsn sigk++++ d+lg+p+ +++++ ++ k+t+t+r+rdt+ q   ++de+++++ e
      CDO73359.1 539 KVLIVPLSA-KPEFDPLVKEVSAKLRKAGIFSRVDDSNTSIGKRYARNDELGTPYGLTLDFASVAKRTMTLRERDTTGQLIGDIDEVIGVVTE 630
                     79*******.777****************************************************************************9987 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   2.1e-13   1.9e-09      12     178 ..     218     515 ..     212     516 .. 0.67

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.1e-13
                   EE-SSSHHHHHHHHHHHEE..EBGGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SCEEEEEE CS
                   xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  12 iLkPtneetfvelirdevl..rskrLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglefraiiel 104
                    L+P+  +++   ++   l  ++ r+P+  +qi++ +R+E s  r GLlRvreF++ + + ++  e++  + ++++  +  +++ r   +   ++  
    CDO73359.1 218 FLRPETAQGHFLNFSRL-LefNNGRIPFASAQIGRSFRNEIS-PRaGLLRVREFTMAEIEHYVDpEDKRHERFSEVRDVELDLLDRHTQSAGSTKVT 312
                   699*9999999999965.5579999****************9.666*****************9777777766666555555555544333222222 PP

                   .GTTSC........................................................................................... CS
                   .xxxxx........................................................................................... RF
  tRNA-synt_2b 105 .msaks........................................................................................... 109
                    m++++                                                                                           
    CDO73359.1 313 rMKIGDavdkgvvanetlgyflarihqflikigidptrlrfrqhmanemahyatdcwdaeiqnsygwtecvgcadraaydlsvhsaktghplvvrqa 409
                   2332223355667777777777777777777777777777777777777777777777777777777776666666666666666666666666666 PP

                   .....................BTTSEEEEEEEEETT..............TSEEEEEEEEEEEETHH.HHHTTE..EEECTTSSEEEEEEEEEEEEH CS
                   .....................xxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 110 .....................adykdkkefeavses..............ltkgieigtiqklgtrl.serlga..tvldennreksvimicaaigv 168
                                         ++kd+ +++ ++                ++++  i +  +++++l ++ l +  ++ ++  re ++ +i  ++g+
    CDO73359.1 410 lkepiiteklvaefnkktfgkTFGKDSAVIQNIVGGmdeallaklqgelaQGSTS-ITSSDGREFKLtPDLLTIekKTFKQSIREFTPNVIEPSFGL 505
                   6666666666666666665555555555555555548888888888877544444.66666666655245555566666777788888888888888 PP

                   HHHHHHHHHH CS
                   xxxxxxxxxx RF
  tRNA-synt_2b 169 eRllsaileq 178
                    R+l a+le+
    CDO73359.1 506 GRILYALLEH 515
                   8888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4601.60
//
Query:       CDO73360.1  [L=233]
Description: hypothetical protein BN946_scf185008.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-06   25.1   2.0    1.3e-05   24.7   2.0    1.2  1  EBP       Emopamil binding protein
  ------ inclusion threshold ------
       0.12   12.8   0.1       0.12   12.8   0.1    2.5  2  DUF802    Domain of unknown function (DUF802)


Domain annotation for each model (and alignments):
>> EBP  Emopamil binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   2.0   1.5e-09   1.3e-05     104     177 ..     142     215 ..     122     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.5e-09
         EBP 104 iakekplrhllqivlataelyGgvlyfatewlegslnldtseplylwvYlvffNalWvviPllllvesvkeiak 177
                  +  +p++ ll ++ a++ l  +vly++ e++ g+ +  ++++  l vY ++ N+lW+v+P +++++ +k+i++
  CDO73360.1 142 HVAGSPAAPLLGFASAVMTLSKTVLYWLQEYYCGGCAVGHNDLKTLIVYWIIPNGLWLVVPSFIIWQLAKDITD 215
                 3333688888889999999**************************************************99986 PP

>> DUF802  Domain of unknown function (DUF802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.0       0.8   7.2e+03      24      31 ..      21      28 ..      11      35 .. 0.46
   2 ?   12.8   0.1   1.4e-05      0.12       2      24 ..     102     124 ..     101     127 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.8
      DUF802 24 qqaqeaLa 31
                ++++e++a
  CDO73360.1 21 RRQSEDQA 28
                33344433 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.4e-05
      DUF802   2 sarleataaavAaaWraALaeQq 24 
                  ar+ ++ ++vA  W ++L++++
  CDO73360.1 102 RARFPDSDSQVAGGWARGLSSHA 124
                 69*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1731.33
//
Query:       CDO73361.1  [L=214]
Description: hypothetical protein BN946_scf185008.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.46   10.6   0.0       0.46   10.6   0.0    3.1  4  DUF1192   Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.4       0.4   7.1e+03      41      55 ..      24      38 ..      18      39 .. 0.62
   2 ?   10.6   0.0   2.5e-05      0.46      21      52 ..      62      93 ..      52      96 .. 0.90
   3 ?   -1.7   0.5      0.18   3.2e+03      30      43 ..     103     116 ..      99     123 .. 0.68
   4 ?   -0.3   0.0     0.062   1.1e+03      17      29 ..     163     175 ..     160     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.4
     DUF1192 41 aaiakkkasraAAea 55
                a  a+ +  ++AA a
  CDO73361.1 24 ASAAQTSTANNAAAA 38
                555555666667766 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.5e-05
     DUF1192 21 SveELeerIalLeaEIaRleaaiakkkasraA 52
                S  EL  +  +Le+EIa l +  a+  a+ +A
  CDO73361.1 62 SFVELASYARTLEQEIATLTTDAAAHAAGSSA 93
                788*******************9999998776 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.18
     DUF1192  30 alLeaEIaRleaai 43 
                 ++Le E +++ +a 
  CDO73361.1 103 EQLETEAEKIARAA 116
                 67888877766554 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.062
     DUF1192  17 LslLSveELeerI 29 
                 ++++SveE e+ I
  CDO73361.1 163 MKKFSVEEFEDLI 175
                 5689*****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1553.79
//
Query:       CDO73362.1  [L=256]
Description: hypothetical protein BN946_scf185008.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-92  307.8   0.0    5.3e-92  307.6   0.0    1.0  1  TIM       Triosephosphate isomerase
  ------ inclusion threshold ------
      0.083   12.4   0.1       0.14   11.6   0.1    1.3  1  CutC      CutC family


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.6   0.0   5.9e-96   5.3e-92       2     243 .]       6     246 ..       5     246 .. 0.97

  Alignments for each domain:
  == domain 1  score: 307.6 bits;  conditional E-value: 5.9e-96
                 EEEEE-TBTS-HHHHHHHHHH.HHHHCHGCTSEEEEE--GGGHHHHHHHHTTSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHHST CS
         TIM   2 liagNwKmnktleeakellkk.lkaklkeekvevviappflylekvkklleesklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrqlfk 99 
                 +++gN+Kmn t +  k+ + k l+++  + +vevviapp++yl ++k+ll+ + ++++aqn+++++sGa+TGe+s ++l d+g+ yvi+GHsErr+lf+
  CDO73362.1   6 FVGGNFKMNPTSQAQKKTIVKvLNEADLDPNVEVVIAPPSIYLLPLKDLLR-KDIQIAAQNCYFKSSGAYTGETSPAQLVDAGIPYVILGHSERRTLFH 103
                 799******988877777777588888889********************6.99********************************************* PP

                 --HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTHHH CS
         TIM 100 EtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvskev 198
                 Et+ ++a+K++aa+++gl++ilCvGEtleerea++t+evv++qlk ++++l++ ++++vviAYePvWAiGtgk+a++ qaqe+ha ir++la+ vs ev
  CDO73362.1 104 ETSGIIAEKTRAAIDAGLRVILCVGETLEEREANRTKEVVEAQLKPVVDTLTKDDWSKVVIAYEPVWAIGTGKVASAAQAQEAHADIRSFLAKAVSPEV 202
                 *************************************************************************************************** PP

                 HTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 199 aekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 ae+iri+YGGsv+++n kel +qkd+dG+LvGgaslk+e F++ii
  CDO73362.1 203 AENIRIIYGGSVTAKNSKELGSQKDVDGFLVGGASLKPE-FVDII 246
                 *************************************98.**997 PP

>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.5e-05      0.14      74     189 ..     109     224 ..      99     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
        CutC  74 mleDieaarelgldgvvlGaltadgeiDlkaleklieaaegLgvtfHrAfDvvadpeealeqlielgvervLtsGqkssaleglek.laeLve.qaaer 170
                 ++e ++aa ++gl  v+l + ++  e + +++++++e a+  +v+     D  ++   a e + ++g  +v    q+++a   +   la+ v+ + ae 
  CDO73362.1 109 IAEKTRAAIDAGLR-VILCVGETLEEREANRTKEVVE-AQLKPVVDTLTKDDWSKVVIAYEPVWAIGTGKVASAAQAQEAHADIRSfLAKAVSpEVAEN 205
                 56666666666665.5556666666667777777776.455677777778888899999999************999998877754277777636799* PP

        CutC 171 ieimagaGvnaenvaelak 189
                 i+i+ g+ v+a+n +el +
  CDO73362.1 206 IRIIYGGSVTAKNSKELGS 224
                 ***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1889.30
//
Query:       CDO73363.1  [L=321]
Description: hypothetical protein BN946_scf185008.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2311.22
//
Query:       CDO73364.1  [L=882]
Description: hypothetical protein BN946_scf185008.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-23   83.0   1.6    6.8e-23   81.8   0.3    2.3  2  EPL1      Enhancer of polycomb-like


Domain annotation for each model (and alignments):
>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.3   3.8e-27   6.8e-23       3     156 ..      16     207 ..      14     208 .. 0.86
   2 ?   -1.6   0.0      0.18   3.2e+03      25      56 ..     413     445 ..     388     490 .. 0.60

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 3.8e-27
        EPL1   3 prldikkkLkviseeevdgldeseseeeiseknsnkensqqavetgvdkkeenekh.q.viaaakkkesssasskeslkkeelkLpkP........... 88 
                 +r+++k++Lkvi+++   +ld  +   +++e++++ ++     ++gvd++++ne+h q v++aa++++++s++++++ +   +++p+P           
  CDO73364.1  16 NRVTNKTRLKVIKDS--LELD--SIVLDEDEEKARVVS-----TAGVDAEDANEEHlQaVLSAATRHSTRSTRAADKEPPPTAYIPTPdstgivqnyee 105
                 68999*******999..2222..222222333333444.....48*****************************9999*************99995555 PP

        EPL1  89 .....sfreferppssyirfsekseeeldd....eveYdMDEeDekWLeelnekrkkegv.............................ekisediFEi 149
                      ++++    p +y+++s+++ee++      ++ Y+MDE+D++WL++ n+++++eg+                              +++ed+FE+
  CDO73364.1 106 lyppgRWKD----PITYVKSSDTVEESISFalanGFIYYMDERDKEWLDKNNQEARGEGTsaqgamsgtstrsgrsakakgkepdyvqpVAMTEDEFEL 200
                 555555555....*************99778888***************************************************************** PP

        EPL1 150 vmdrlEk 156
                 vm  +Ek
  CDO73364.1 201 VMSIFEK 207
                 ******9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.18
        EPL1  25 seseeeiseknsnkens....qqavetgvdkkeene 56 
                 s+++ e++ + ++ e +    q  +e+++++ +e+ 
  CDO73364.1 413 SPTHPEPQIRPKERE-AaiwnQ--IEQEMQQRKEKD 445
                 444444443333333.235432..222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 6011.57
//
Query:       CDO73365.1  [L=308]
Description: hypothetical protein BN946_scf185008.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-60  202.9   0.0      1e-59  202.7   0.0    1.1  1  PMI_typeI  Phosphomannose isomerase type I


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.0   5.6e-64     1e-59       1     219 [.       4     229 ..       4     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: 202.7 bits;  conditional E-value: 5.6e-64
                 EEEEEEEEEE-TTBEECGGSHHHHHH.HHH-TT....TTSCEEEEEEC--TTS-EECTTTC.CCCHCHHHHHHHTGHHHCCHHTS......S-SEEEEE CS
   PMI_typeI   1 lfkLqcgvqnyaWGkiGsesalakll.aasdPs..ieedkpyaElWmgtHpkgpskvlnkk.lkdvvlkellaelresvgkkfge......elpfLfKv 89 
                 +fk+ +++q+y+WGkiG +s++a+++ a   P   ++e+ pyaElWmgtH ++ps+ l+++ l+d   ++  ++++++v+++f++      +lpfLfKv
  CDO73365.1   4 VFKIIPTIQQYDWGKIGLSSKVAQYAvACRLPDftLDESVPYAELWMGTHHSSPSRLLDGTkLSDHLAAH-PELMGPHVIDRFKDagaaegNLPFLFKV 101
                 699*********************86267799999***********************999788877776.799999999999555555559******* PP

                 EEESS---EEE---HHHHHHHHHH.TCCCHCCCTTTEEEEESS.EEEEEEE..HHHHHHHCCCEHCCHCCCECCHHCCHHHHHHCCHTTSHHHHCCCCH CS
   PMI_typeI  90 LsvekvlSiqvHPdKklaeilhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslieagdpealkkkkv 188
                 L +ek+lSiq HPdK  ae lh++ p+ Y+d+NhkpE+a+Alt+F+++cgf pl++i+ f+ + +e+a l+ +  ++ + +  s +++ d  ++k   +
  CDO73365.1 102 LAIEKALSIQTHPDKPMAERLHKERPDVYKDANHKPEMALALTPFQAMCGFLPLQDIAAFINSTPEFAALVPPTITQRFLSVASASASSDHPQVK--AA 198
                 ************************************************************************************99955555555..9* PP

                 HCCHCHCCCTTTHHCCCHCCCCCCCCCCC-H CS
   PMI_typeI 189 lqklFssllnsekekikqklallveriqssd 219
                 l+++Fs ++ ++ +    +l +lv+r +  d
  CDO73365.1 199 LKDVFSAVMTASMDLFRPALGKLVARYEAGD 229
                 *************999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2178.53
//
Query:       CDO73366.1  [L=537]
Description: hypothetical protein BN946_scf185008.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3574.82
//
Query:       CDO73367.1  [L=465]
Description: hypothetical protein BN946_scf185008.g130, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3514.45
//
Query:       CDO73368.1  [L=1361]
Description: Iron reductase domain / Cellobiose dehydrogenase [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-55  186.4   0.1    7.1e-55  185.5   0.1    1.5  1  CDH-cyt        Cytochrome domain of cellobiose dehydrogenase
    7.3e-19   68.7   0.1    1.8e-18   67.4   0.1    1.7  1  GMC_oxred_C    GMC oxidoreductase
    5.1e-18   65.5   0.0    8.9e-18   64.7   0.0    1.4  1  GMC_oxred_N    GMC oxidoreductase
    3.6e-15   56.1   0.1    1.3e-14   54.3   0.0    2.1  1  FHA            FHA domain
    4.1e-10   39.2  11.2    7.2e-10   38.4  11.2    1.4  1  zf-RING_11     RING-like zinc finger
    5.5e-08   33.0  11.6    1.1e-07   32.1  11.6    1.5  1  zf-RING_2      Ring finger domain
    8.1e-06   25.2   0.0    5.5e-05   22.4   0.0    2.0  2  FAD_binding_2  FAD binding domain
    0.00015   21.5  11.4    0.00028   20.7  11.4    1.4  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    0.00018   20.8   0.2    0.00031   20.1   0.2    1.2  1  FAD_binding_3  FAD binding domain
    0.00021   20.8   0.0    0.00044   19.7   0.0    1.5  1  FAD_oxidored   FAD dependent oxidoreductase
    0.00028   20.2   0.1    0.00055   19.3   0.1    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00045   20.0  11.8    0.00082   19.2  11.8    1.5  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    0.00054   18.8   0.1    0.00092   18.0   0.1    1.3  1  HI0933_like    HI0933-like protein
    0.00068   19.8   0.1      0.002   18.3   0.1    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0008   19.6   7.4     0.0015   18.7   7.4    1.4  1  zf-rbx1        RING-H2 zinc finger domain
     0.0012   18.2   0.2      0.013   14.8   0.2    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0024   17.9   2.2     0.0044   17.1   2.2    1.4  1  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
  ------ inclusion threshold ------
      0.012   14.8   0.3      0.035   13.3   0.1    1.8  2  Thi4           Thi4 family
      0.017   14.7   0.3      0.041   13.5   0.1    1.7  1  DAO            FAD dependent oxidoreductase
      0.024   14.6   9.8      0.046   13.7   9.8    1.5  1  zf-RING_5      zinc-RING finger domain
       0.25   11.4  10.5       0.52   10.4  10.5    1.6  1  zf-RING_UBOX   RING-type zinc-finger
       0.98    9.3   7.6        1.9    8.4   7.6    1.4  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
          2    8.4  11.4       0.31   11.0   6.3    2.1  2  PHD            PHD-finger
        5.4    6.7   6.8         13    5.5   6.8    1.6  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
        8.2    6.4   9.9         15    5.6   9.9    1.4  1  Prok-RING_4    Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.1   9.9e-58   7.1e-55       1     181 [.      25     196 ..      25     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 9.9e-58
                 EE-TTT--EEEEETT-SS-EEEEEEB-CCCTS--SEEEEEEEEE-GCS--EEEEESSSSSCTSEEEEEEEETTEEEEEEEEBSSSSS-EE--SS-EEEE CS
     CDH-cyt   1 ytdpatgitFqtytdeaggftfgialPedattdatefigqlvaplsakagWaGislggsMtnnlLlvaWpngnevvtSfrlatgyasPevytgdakltq 99 
                 y+d+ +g+ F+ +td    +++gi+lP+ +  +++efig +vapl+  a+W+G++lgg+M ++lL+vaWpngne+v+S+r+at+y+ P+vy +++++t+
  CDO73368.1  25 YVDSGNGFVFDGITDPVYHVSYGIVLPQAT--TSSEFIGEIVAPLD--AKWIGLALGGAMIGDLLIVAWPNGNEIVSSTRYATAYQLPDVY-EGPTITT 118
                 99*************************955..89***********9..*******************************************.778**** PP

                 EE.EEE-SSEEEEEEEEET-SEEEETTEEEE--TTTEEEEEEEEESS--BSTTSCCCB-----SEEEEEEEE--CCB-TTHH CS
     CDH-cyt 100 lsgtsvnathftltfrCqgClsweqggtsgsastssnlvlgwAqskkaptnpaspdstlsqHdngfgqfgadlsaaksasYe 181
                 l+++ vn+th++++frCq+C+swe gg+  +   +++ v++wA+s+  +++p++p++t++ H++ fg fg+++ +a++++Y+
  CDO73368.1 119 LPSSLVNSTHWKFVFRCQNCTSWE-GGGGIDP--TGTGVFAWAYSSVGVDDPSDPNTTFQEHTD-FGFFGINFPDAQNSNYQ 196
                 ***********************5.5544444..48889*************************.****************7 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1   2.5e-21   1.8e-18       3     144 .]     632     760 ..     631     760 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 2.5e-21
                  --EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STC CS
  GMC_oxred_C   3 srGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadp 100
                  srGr+ ++   + ++ +i   +l+dp d+  l++al+ +   +++           pg +  t+d +++ +++++++  +++  s+H++G +++G++p
   CDO73368.1 632 SRGRLGVDA--ALNMKAITTPWLTDPVDKTILLQALHDVVSNINNV----------PGLTLITPDHTQTLEQYVAAYDPATM-CSNHWVGAAKIGSSP 716
                  788888876..6778889999**************99999988888..........56666666667777775555666644.59************* PP

                  GCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C 101 kdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +++VVD++++v+ +dnL++vDaS++Ps p +np    +  Ae+a
   CDO73368.1 717 STAVVDENTKVFNTDNLFIVDASIIPSLPVGNPHGALMSAAEQA 760
                  *****************************************986 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.2e-20   8.9e-18       1     291 [.     231     515 ..     231     517 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.2e-20
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl.......imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsay 91 
                  +d++++g+G  g   A RLse ++ +v++le gg  +  +         + ++  k     l + + t p++    + + + aG  lGGg++vN++ +
   CDO73368.1 231 YDYIIVGAGPGGIIAADRLSEAGK-KVILLERGGPSTAETggtyyapWAKSQNLTKFDIPGLFESMFTDPNPWWWCKDTNFFAGCLLGGGTSVNGAGS 327
                  79*******************986.7889999998888875655432111111112222234567778888876655555559***********9776 PP

  GMC_oxred_N  92 iRtpaadldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk.hqcGvcllgvtcrt 188
                  +    +d d  +++ g +  s+ + +p+  k+  ++ + +d+  +dg+       ++    ++ ll++   + + ++++ ++k h  G++ ++    +
   CDO73368.1 328 LYWLPSDAD-FSTANGWP-TSWGNHAPYTSKLK-QRLPSTDHPSTDGKRYL----EQSATVVSQLLQGQGYQQITINDNPDSKdHVFGYSAFD--FIN 416
                  666655544.46676888.699999*******9.77777999999997665....66666669999998888888*****999899*******..*** PP

  GMC_oxred_N 189 garqstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgt..vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvd 284
                  g+r +   ++++ a +r n +    + +++++ +  +  ++GV+++++  +         +  v++aaG++ +P +L +SG+G+ +      +++v  
   CDO73368.1 417 GQRAGPVATYFQTASARSNFVYKDFTLVSQVLRN--GSTITGVRTNNTALGpdGIVPLNPNGRVILAAGSFGTPRILFQSGIGPTDM-----IQTVQS 507
                  *****************88888888999***656..**********99988543344456789**********************99.....888877 PP

  GMC_oxred_N 285 lp.vGknL 291
                   p   +nL
   CDO73368.1 508 NPtAAANL 515
                  77666665 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.8e-17   1.3e-14       7      69 .]     998    1063 ..     978    1063 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.8e-17
                  TTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEEST....TSEEEE-TTEEEEET CS
         FHA    7 sdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigk....gepveLksgdvielG 69  
                   ++ + ++++++Sr Ha+i+++ g g+++++D +S+ Gtf+N++r+++    ++p+eLk+gd ++lG
  CDO73368.1  998 GSNKLAFKSKVVSRAHAEIWVEAG-GRFFIRDTKSSSGTFLNHVRLSPanneSRPHELKDGDLLQLG 1063
                  67899999****************.****************************************98 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4  11.2     1e-12   7.2e-10       1      29 []    1125    1153 ..    1125    1153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1e-12
  zf-RING_11    1 eCsICLeefkpgqalfilpCsHtFHfkCI 29  
                  +C+ICL +++  qalfi+pCsH+FH+kCI
  CDO73368.1 1125 DCCICLFSVTIHQALFIAPCSHAFHYKCI 1153
                  8***************************9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1  11.6   1.5e-10   1.1e-07       2      44 .]    1125    1170 ..    1124    1170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.5e-10
   zf-RING_2    2 eCpICleelssadsvlllpCgHvfhreClerwlrssst...CPlCr 44  
                  +C+ICl +++ ++ + + pC+H fh++C++ +l+s++    CPlCr
  CDO73368.1 1125 DCCICLFSVTIHQALFIAPCSHAFHYKCIRPLLESHHPafsCPLCR 1170
                  7*****99999999******************999999*******9 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.7e-08   5.5e-05       1      49 [.     232     277 ..     232     288 .. 0.87
   2 ?   -0.1   0.0      0.53   3.8e+02     145     204 ..     424     487 ..     402     516 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.7e-08
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavl 49 
                    D i++G+G +G  AA +++eaG+kv+++e +++   +ta  +G+  a+ 
     CDO73368.1 232 DYIIVGAGPGGIIAADRLSEAGKKVILLERGGP---STAETGGTYYAPW 277
                    88******************************9...8887788776665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
                    HHHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEET..TTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 145 arlvesarkag.vdfqerteadeLivedgrvtGavvenp..esgrevrirak.avvlatgGfgr 204
                    a+ +++a ++    + + t + ++++++  +tG+  +n      ++v ++ + +v+la+g fg 
     CDO73368.1 424 ATYFQTASARSnFVYKDFTLVSQVLRNGSTITGVRTNNTalGPDGIVPLNPNgRVILAAGSFGT 487
                    45555554444466677788889999888999999999988888999999999********997 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  11.4   3.9e-07   0.00028       1      41 []    1126    1169 ..    1126    1169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.9e-07
                  -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC.TSSB--TTT CS
    zf-C3HC4    1 CpiCleeakepn..elleCkHsfCskCirkilks.rkkvkCPlC 41  
                  C iCl  +++++   + +C H+f++kCir +l+s + +++CPlC
  CDO73368.1 1126 CCICLFSVTIHQalFIAPCSHAFHYKCIRPLLEShHPAFSCPLC 1169
                  9***99988888889******************9888889**** PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   4.3e-07   0.00031       4      34 ..     233     263 ..     231     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.3e-07
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                     +IVGaGp G+++a  LseaG +v+l+e+  
     CDO73368.1 233 YIIVGAGPGGIIAADRLSEAGKKVILLERGG 263
                    58**************************965 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.1e-07   0.00044       1      53 [.     232     280 ..     232     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.1e-07
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee 53 
                   D ++vG+gp+G++AA    +aG+kv+L+e+    GG +t++ ++t   ++a++
    CDO73368.1 232 DYIIVGAGPGGIIAADRLSEAGKKVILLER----GGPSTAETGGTYYAPWAKS 280
                   669**************************9....8888888888888888666 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   7.6e-07   0.00055       1      33 [.     231     263 ..     231     286 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.6e-07
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlveleg 33 
                  +d++++G+Gp+G+ aa +l++ag kv+l+e++g
   CDO73368.1 231 YDYIIVGAGPGGIIAADRLSEAGKKVILLERGG 263
                  689**************************8544 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2  11.8   1.1e-06   0.00082       2      40 .]    1126    1169 ..    1125    1169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-06
  zf-C3HC4_2    2 CpiCldm..lkdpsvvtpCgHvfCqkCilrsLeekn...eCPlC 40  
                  C iCl +  + +++ ++pC H f++kCi++ Le++    +CPlC
  CDO73368.1 1126 CCICLFSvtIHQALFIAPCSHAFHYKCIRPLLESHHpafSCPLC 1169
                  9999864227899999****************99877899**** PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.3e-06   0.00092       2      32 ..     232     262 ..     231     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  d i++G+G+ G+ aA +++++gk+V+lle++
   CDO73368.1 232 DYIIVGAGPGGIIAADRLSEAGKKVILLERG 262
                  78***************************86 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.7e-06     0.002       1      28 [.     235     262 ..     235     279 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.7e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    IvGaG +G  aA +L++ag++v lle++
     CDO73368.1 235 IVGAGPGGIIAADRLSEAGKKVILLERG 262
                    9*************************97 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   7.4   2.1e-06    0.0015      25      55 .]    1137    1170 ..    1117    1170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.1e-06
     zf-rbx1   25 cpvvlGeCgHaFHlhCiskWlkt...rkvCPlcr 55  
                    + +  C+HaFH +Ci+  l++     +CPlcr
  CDO73368.1 1137 QALFIAPCSHAFHYKCIRPLLEShhpAFSCPLCR 1170
                  5667789****************877778****8 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.8e-05     0.013       1      31 [.     234     263 ..     234     291 .. 0.90
   2 ?    0.7   0.0      0.35   2.5e+02      85     147 ..     425     497 ..     394     513 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgn 31 
                  iI+GaGP G+ aa  l +ag  +++ lE+g 
   CDO73368.1 234 IIVGAGPGGIIAADRLSEAGK-KVILLERGG 263
                  8*******************9.79*****94 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
  Pyr_redox_3  85 eYlrevaksfelpiklfeeVesvkked.egfevetsketyeAk.........kviiAtGefdkPnklnipGee 147
                   Y+++  ++ +   k f+ V +v +++ +   v+t++  +  +         +vi+A+G f+ P+ l  +G  
   CDO73368.1 425 TYFQTASARSNFVYKDFTLVSQVLRNGsTITGVRTNNTALGPDgivplnpngRVILAAGSFGTPRILFQSGIG 497
                  566666666666666666666666654133556666655443211111122279**********988777665 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.2   6.1e-06    0.0044      45      82 ..    1137    1174 ..    1117    1177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.1e-06
                  S-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB-- CS
  zf-ANAPC11   45 cplvlGkckhnfhlhcilkwletetskglcpmcrqtfk 82  
                   +l +  c+h+fh +ci   le+++    cp+cr   +
  CDO73368.1 1137 QALFIAPCSHAFHYKCIRPLLESHHPAFSCPLCRTFAN 1174
                  5688999***************************8655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.9e-05     0.035      18      49 ..     231     261 ..     226     276 .. 0.83
   2 ?   -3.7   0.0       7.6   5.5e+03     125     142 ..     447     464 ..     441     472 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-05
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvailer 49 
                  D +ivGaG+ G+ aa  l+++ + kv++ler
  CDO73368.1 231 YDYIIVGAGPGGIIAADRLSEA-GKKVILLER 261
                 589*******************.********8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.6
                 EEETBTEEEEEEEEEHHH CS
        Thi4 125 ivregegvaGvvinwtlv 142
                 ++r+g++++Gv +n t++
  CDO73368.1 447 VLRNGSTITGVRTNNTAL 464
                 78999********99875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.7e-05     0.041       1      39 [.     232     271 ..     232     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.7e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgr 39 
                 d +i+G+G  G+ +A  L+++g  V+lle+g  ++++ +g+
  CDO73368.1 232 DYIIVGAGPGGIIAADRLSEAGkkVILLERG-GPSTAETGG 271
                 789******************99********.888555554 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   9.8   6.4e-05     0.046       2      44 .]    1126    1171 ..    1125    1171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-05
   zf-RING_5    2 CnkCfeklskeekfyltsCgHifCekClkkll...ekeavCpiCrk 44  
                  C +C  +++ +++ ++ +C+H f+ kC++ ll   ++ + Cp+Cr+
  CDO73368.1 1126 CCICLFSVTIHQALFIAPCSHAFHYKCIRPLLeshHPAFSCPLCRT 1171
                  7778877788899*******************************95 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.5   0.00073      0.52       1      39 []    1126    1167 ..    1126    1167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00073
  zf-RING_UBOX    1 CpIClelft.dP.lvl.pCGHtFCreClwelskslegafkCP 39  
                    C ICl + t +  l+  pC+H F+ +C++ l +s ++af+CP
    CDO73368.1 1126 CCICLFSVTiHQaLFIaPCSHAFHYKCIRPLLESHHPAFSCP 1167
                    99***8777533455559**********66899********9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.6    0.0026       1.9       4      45 ..    1125    1171 ..    1123    1174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
                  B-TTTSSS...BS-EEETTEEEEEE-HHHHHHHHH...TT-B-TTT-- CS
  zf-C3HC4_3    4 eCviCler...prnvvllpCgHlvlCeeCaekllk...rkkkCpiCrr 45  
                   C+iCl +    +  ++ pC H  + ++C + ll+      +Cp+Cr+
  CDO73368.1 1125 DCCICLFSvtiHQALFIAPCSHA-FHYKCIRPLLEshhPAFSCPLCRT 1171
                  5****9865534445666*****.**********98888889*****7 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       2.5   1.8e+03      15      24 ..     132     141 ..     123     142 .. 0.65
   2 ?   11.0   6.3   0.00043      0.31       2      50 ..    1126    1170 ..    1125    1171 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.5
                 EEEETTTSCE CS
         PHD  15 lvqCdgCkrw 24 
                 +  C++C +w
  CDO73368.1 132 VFRCQNCTSW 141
                 4456666665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00043
                  BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD    2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50  
                  C++C   s + ++ ++   C+++fH kC++p les       + C+ C+
  CDO73368.1 1126 CCICLF-SVTIHQALFIAPCSHAFHYKCIRPLLESHHP---AFSCPLCR 1170
                  889999.88899999999**************994333...6******7 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.8     0.018        13       6      46 ..    1125    1167 ..    1120    1169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.018
  Zn_ribbon_17    6 sCayC..elavkgrvvlcgvCeHvlHasCarewfendd.laeCp 46  
                     C++C  ++++++ +++   C H  H  C+r  +e  +   +Cp
    CDO73368.1 1125 DCCIClfSVTIHQALFI-APCSHAFHYKCIRPLLESHHpAFSCP 1167
                    7****434555666665.56***********9999988666776 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.9     0.021        15       1      38 [.    1126    1171 ..    1126    1177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
  Prok-RING_4    1 CvlCgeq...ekkailepCgHlvCkeCfdskdls.....sCPlCqr 38  
                   C +C  +   ++   ++pC H +  +C      s     sCPlC++
   CDO73368.1 1126 CCICLFSvtiHQALFIAPCSHAFHYKCIRPLLEShhpafSCPLCRT 1171
                   556655544488889************998844446899*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 9180.48
//
Query:       CDO73369.1  [L=253]
Description: hypothetical protein BN946_scf185013.g2 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-34  117.0   0.1    5.7e-34  116.4   0.1    1.3  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
     0.0007   20.1   0.1     0.0007   20.1   0.1    2.3  2  Fer4_17   4Fe-4S dicluster domain
     0.0016   18.3   1.4     0.0034   17.3   1.4    1.5  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
     0.0071   16.4   0.8       0.04   14.0   0.0    2.2  2  Fer4_10   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.016   15.7   4.5      0.054   13.9   4.5    2.1  1  Fer4_8    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.1   1.6e-37   5.7e-34       2     108 ..      40     145 ..      39     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 1.6e-37
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvirD 99 
                 +k++R++p+++++k+ +q+y+v+ +  + ++ldaL kik+e+dptl+fr+sCregiCGsca++inG++tlaC  +i++ ++++  +++ plp++ +++D
  CDO73369.1  40 FKIYRWNPDEPSKKPTLQTYTVDLNqCGPMILDALIKIKNEIDPTLTFRRSCREGICGSCAMNINGQNTLACLCRIDRNTSKD--TKIYPLPHMYIVKD 136
                 89*********************9989***************************************************88776..8************* PP

      Fer2_3 100 LvvDideml 108
                 Lv D ++++
  CDO73369.1 137 LVPDLTQFY 145
                 *****9986 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.2       1.4   5.1e+03       8      15 ..      96     102 ..      89     128 .. 0.62
   2 !   20.1   0.1     2e-07    0.0007      22      61 .]     189     238 ..     177     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
     Fer4_17   8 ClpeCpsy 15 
                 C   C ++
  CDO73369.1  96 CGS-CAMN 102
                 333.4443 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2e-07
     Fer4_17  22 pkkllraakl..........glleeaekeekaslCieCgeCerkCPqgld 61 
                 p++l++a+++          +++e++++e    +C+++ +C+r CP+gl+
  CDO73369.1 189 PATLMAAYRWmsdsrdtykaQRMEKMQNELSLYRCHTIFNCARTCPKGLN 238
                 6777777777777777777678888877789****************996 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.4   9.4e-07    0.0034      26      77 ..      82     115 ..      54     116 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.4e-07
                 TTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  26 nggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77 
                 ++ + ++ sC++g Cg+C+  ++            g++       laC +++
  CDO73369.1  82 DPTLTFRRSCREGICGSCAMNIN------------GQN------TLACLCRI 115
                 55667899***********9999............666......48888875 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3       0.2     7e+02      29      52 ..      75     100 ..      64     102 .. 0.74
   2 !   14.0   0.0   1.1e-05      0.04      24      56 .]     202     234 ..     170     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
     Fer4_10  29 kgeaseeeavrkkvekCtg..cgaCv 52 
                 +++++e+++  +   +C +  cg+C+
  CDO73369.1  75 IKIKNEIDPTLTFRRSCREgiCGSCA 100
                 56666777777777888888899986 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
     Fer4_10  24 tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +++ +k++++e+ +++  +++C+++++C++ CP
  CDO73369.1 202 SRDTYKAQRMEKMQNELSLYRCHTIFNCARTCP 234
                 44555566666666666***************9 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.5   1.5e-05     0.054      27      64 ..     205     236 ..      89     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
      Fer4_8  27 dargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 + + +++e++q+      e +l++C+t  +C++ Cp+g
  CDO73369.1 205 TYKAQRMEKMQN------ELSLYRCHTIFNCARTCPKG 236
                 222222223333......566***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1809.35
//
Query:       CDO73370.1  [L=510]
Description: hypothetical protein BN946_scf185013.g3 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     9e-192  637.3   0.0   1.1e-191  637.0   0.0    1.0  1  Catalase      Catalase
    2.2e-16   59.8   0.1    5.5e-16   58.5   0.1    1.7  1  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  637.0   0.0  1.2e-195  1.1e-191       1     380 [.      16     394 ..      16     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 637.0 bits;  conditional E-value: 1.2e-195
                 B-TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSS CS
    Catalase   1 ttseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadta 99 
                 tts+Gapv+++++++++g+ Gplllqd+h i+ lahfdreripeRvvhAkGagahg+Fevt+di+dlt+a+l++kvg+k+pv++RfStv+ge+gsad+a
  CDO73370.1  16 TTSTGAPVAEPYAAQRIGKIGPLLLQDFHHIDLLAHFDRERIPERVVHAKGAGAHGYFEVTHDITDLTCAALFKKVGTKAPVTMRFSTVGGESGSADSA 114
                 899************************************************************************************************ PP

                 SS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE-T CS
    Catalase 100 RdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlkdaamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklvnk 198
                 Rd+rGfa+k+ TeeGn+D+v+nntpvFfirDp+kfp++ih+qkr+pqt+lkda+mfwd+ls+npes+hqv+ilfsdrg+p++y+hm+gy++h+fk+vn+
  CDO73370.1 115 RDPRGFAIKIKTEEGNLDWVFNNTPVFFIRDPAKFPHFIHTQKRDPQTHLKDADMFWDYLSQNPESIHQVMILFSDRGTPDGYQHMHGYSGHAFKFVNA 213
                 *************************************************************************************************** PP

                 T--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE--S- CS
    Catalase 199 egevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnrnpen 297
                 +g++vyv++h++ + g+k+lt+e+a+klage++dy  + L+ +iekg+yp+w++yvq+mt+e+ae +r+nilDlTkvwp++e+plr+vGk++Ln+n+en
  CDO73370.1 214 SGKFVYVQIHVRKDGGFKTLTDEQATKLAGENADYGIQSLFGDIEKGNYPSWTVYVQTMTPEQAELFRYNILDLTKVWPHEEFPLRPVGKIVLNKNVEN 312
                 *************************************************************************************************** PP

                 HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..---S----TT-.....S-S---SS-S CS
    Catalase 298 yFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepns 380
                 yFae+Eq+afsps+lvpGieps+D++Lq+RlfsY+dt+r+RlG+ny qlpvN+p a+van+qrdG+m++ +n+g++pnY+++ 
  CDO73370.1 313 YFAEIEQAAFSPSHLVPGIEPSADPVLQSRLFSYPDTHRHRLGTNYGQLPVNAPIAPVANFQRDGFMAF-NNQGSRPNYQSSI 394
                 ********************************************************************8.789999***9975 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   6.1e-20   5.5e-16       7      64 ..     427     485 ..     422     486 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 6.1e-20
                   SSHHHHHHHH.HS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHH CS
  Catalase-rel   7 hfsQagllyr.smseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaea 64 
                   +f+Q+++l++ ++s+ +++++v n++++l+++++ e++ rql++fa vD++l  r+a+a
    CDO73370.1 427 DFEQPRALWQkVFSDTDRDHFVGNVVGHLKNAKSAEVKARQLSVFAAVDQTLSDRIADA 485
                   8********99**********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3732.44
//
Query:       CDO73371.1  [L=125]
Description: hypothetical protein BN946_scf185013.g4 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-35  121.2   0.0    2.9e-35  121.0   0.0    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   1.6e-39   2.9e-35       4     122 .]       7     125 .]       5     125 .] 0.94

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 1.6e-39
                    SS-EEE--SSSSBSEEEEEEETT-.....---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS CS
  Ribosomal_L14   4 lktrlkvaDNsgakevecikvlggk....krkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplG 95 
                    ++++l++aDNsgak++ +i+ +g++    + + a vGd++v+svkk+kp   + +++ + avv+r++k +rr+dG+++ f+dna V++n kge++G
     CDO73371.1   7 TGAVLNCADNSGAKSLFVIEAYGTGshlnRLPDAGVGDMVVASVKKGKP---ELRKKTMPAVVIRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKG 99 
                    5789******************999555444******************...899999************************************** PP

                    -.B-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  96 trifgpvarelrekkflkivslApevl 122
                    + i+gpva+e+++  +++i+s A +v+
     CDO73371.1 100 SAITGPVAKECADL-WPRIASNAGTVV 125
                    *************9.********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 841.68
//
Query:       CDO73372.1  [L=315]
Description: hypothetical protein BN946_scf185013.g5 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-17   62.0   0.0    5.7e-17   61.3   0.0    1.3  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    3.5e-06   26.6   0.0    6.7e-06   25.7   0.0    1.4  1  RRM_5        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.027   14.4   0.0    1.3  1  RL           RL domain
       0.17   11.9   0.0       0.27   11.3   0.0    1.3  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   1.3e-20   5.7e-17       1      69 [.      66     138 ..      66     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.3e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd....etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+VgnL+p+v+e  L +lFs fG+i +++         +gk++g+afVeF+++ dAe+Al + n+k l+gr+l
  CDO73372.1  66 LYVGNLHPTVDEYALLQLFSRFGKIAKLDFLFHksgpLKGKPRGYAFVEFADQGDAERALLHTNEKLLRGRKL 138
                 8************************9999888779999*********************************98 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.5e-09   6.7e-06      29     101 ..      66     145 ..      37     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.5e-09
       RRM_5  29 llVyglepdkvnldklFnlfclYgnvervkflktk........ketalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                 l V +l+p +v    l  lf+ +g ++++ fl+ k        +++a+v+ +d+ ++era+ H n++ l g++l v+   q
  CDO73372.1  66 LYVGNLHP-TVDEYALLQLFSRFGKIAKLDFLFHKsgplkgkpRGYAFVEFADQGDAERALLHTNEKLLRGRKLMVTYANQ 145
                 55777776.5778899****************99833333333379******************************98877 PP

>> RL  RL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.9e-06     0.027      20      60 ..      70     118 ..      63     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.9e-06
          RL  20 scpskisekkllkylsqhGkinkh.FfYeskgv.......yavvEFsek 60 
                 ++++ + e  ll+ +s++Gki k+ F +++ g        ya vEF+++
  CDO73372.1  70 NLHPTVDEYALLQLFSRFGKIAKLdFLFHKSGPlkgkprgYAFVEFADQ 118
                 567889999************9986888888888999*********986 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.9e-05      0.27      21      53 .]      84     125 ..      73     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
  Nup35_RRM_2  21 FasfGeIvkhyvp.........kevsvmyvkfesekdaekAL 53 
                  F  fG+I k ++          k + +++v+f++ +dae+AL
   CDO73372.1  84 FSRFGKIAKLDFLfhksgplkgKPRGYAFVEFADQGDAERAL 125
                  8889****988888888899997799***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 2067.23
//
Query:       CDO73373.1  [L=839]
Description: hypothetical protein BN946_scf185013.g6 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 5142.80
//
Query:       CDO73374.1  [L=207]
Description: hypothetical protein BN946_scf185013.g7 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.26   11.8   1.6       0.74   10.3   0.1    2.1  2  FlgN      FlgN protein


Domain annotation for each model (and alignments):
>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.042   7.4e+02      42      94 ..       2      48 ..       1      83 [. 0.77
   2 ?   10.3   0.1   4.1e-05      0.74      33      82 ..     100     149 ..      92     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.042
                HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCTTCCHHHHHHHH CS
        FlgN 42 elleekqellekleqleqkrakllaelglsaeeatlsellakeedeelkelwq 94
                ++lee  + l++l++ ++  a  +a+++l+    tl+ lla  + ++ +elw 
  CDO73374.1  2 AILEEAGTALDALRTVARPVAIRQANVSLE----TLEVLLA--DPDATRELWV 48
                577777777888888888777777777777....8888888..7777777774 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.1e-05
                 HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC CS
        FlgN  33 kagdieaLeelleekqellekleqleqkrakllaelglsaeeatlsella 82 
                  ++d ++L++++ ek ++++kl+ ++++ + +l + ++ a    l++l a
  CDO73374.1 100 LESDCDRLHDIAFEKLATVRKLRSEARTVRIALRHSATAATLVALDRLFA 149
                 57899*****************************9999976666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1580.85
//
Query:       CDO73375.1  [L=383]
Description: hypothetical protein BN946_scf185013.g9 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-71  238.4   0.1      1e-70  238.2   0.1    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.13   12.2   0.3         10    6.1   0.0    2.5  2  Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.2   0.1   1.2e-74     1e-70       1     292 [.      30     341 ..      30     343 .. 0.94

  Alignments for each domain:
  == domain 1  score: 238.2 bits;  conditional E-value: 1.2e-74
                   .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.........--SSSTTSSSS- CS
  Aldo_ket_red   1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.........dlrdaeiksgls 82 
                   +l lG++++g+k      ++++ke +++ll++++eaG nf+DtA+ Y++ +see++Ge+++k r+ r++++iatK          d  +++  +g +
    CDO73375.1  30 PLQLGAGSIGDKwekfgmGTMNKEMSFRLLDAFYEAGGNFIDTANNYQDETSEEFIGEWMEK-RGIRDQMVIATKYtsnfkrgqtDVKQQSTYVGNH 125
                   588999999999999999********************************************.*************999999887777778888888 PP

                   HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTH CS
  Aldo_ket_red  83 keniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegl 175
                    +++r+s+e+slk+L+t+y+D+l++H++d++++ ieev+ al+ lv +Gk+ ++GvS ++++ +++a    + ++k+++v++q ++++l ++ e+++
    CDO73375.1 126 VKSLRNSVEASLKKLRTNYIDILYVHWWDYTCS-IEEVMNALHNLVASGKVLYLGVSDTPAWVVSSAnryaRDHGKTPFVIYQGRWSILARDMEREI 221
                   88*******************************.*************************************************************** PP

                   HHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------...TS-HHHHHHHHHHHHHHHHTT-.-HHHHHHHHHTTSTT-SEEEE--SSHH CS
  Aldo_ket_red 176 lelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd...ertsknldaaeelselakehgv.slaqlalryalsqpavgivipgasnie 268
                   +++c++ g+++ ++++l+ G +++  ++ee+  ++e+ +    d   er++ + + ++ l+e+a++ g  s++++a++y++++ + +++i+g +++e
    CDO73375.1 222 IPMCRHDGMAIAPWEVLAAGKIRTDAEEEERRRSGEKGRII-FDpnwERNETEKKVCKVLEEVAAQVGAkSIQAVAIAYVMQKTPYVFPILGGRKPE 317
                   **********************9888888887765554433.2269999*****************7777*************************** PP

                   HHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 269 qlednldalelklseeevaeldel 292
                   ql +n++al++ l++e++++++++
    CDO73375.1 318 QLYANIEALNIALTDEQIRYIESA 341
                   *********************986 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1    0.0061        55       4      91 ..     165     246 ..     163     290 .. 0.62
   2 ?    6.1   0.0    0.0011        10      16      40 ..     296     320 ..     290     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0061
                   HHHHHHHC-SEEEEEEEETTE.EEEEEEEEEEETTEEEEEEETTSHCCHCCC..T--ECEEEEEEEEEEE-SEGGEEE.EEEEEEEEEEEEE CS
  Pyridox_ox_2   4 eilalLdegevgrlafvddge.pvilPvnyvvdgdslyfhgakgsrlaaalr..gapvcvvvtevdglvlarsfnsln.yrSVvvrGraeev 91 
                   +++ l+++g+v+ l+++d ++ +v+    y++d+++  f  +  +r+  ++r  ++   +   + dg   a     +  +  V++ G+++  
    CDO73375.1 165 ALHNLVASGKVLYLGVSDTPAwVVSSANRYARDHGKTPFVIYQ-GRWSILARdmER-EIIPMCRHDG--MA-----IApW-EVLAAGKIRTD 246
                   5799999***********9998888999999998886665555.333333331111.2222222344..12.....2226.66666666654 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0011
                   EEEEEETTEEEEEEEEEEEETTEEE CS
  Pyridox_ox_2  16 rlafvddgepvilPvnyvvdgdsly 40 
                    +a+v+++ p+++P+  ++  ++ly
    CDO73375.1 296 AIAYVMQKTPYVFPILGGRKPEQLY 320
                   59*****************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2699.33
//
Query:       CDO73376.1  [L=712]
Description: hypothetical protein BN946_scf185013.g10 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-12   45.8   0.0    6.5e-12   45.0   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.25   11.6   2.4       0.48   10.7   0.1    2.3  2  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   7.3e-16   6.5e-12      88     196 ..     225     332 ..     190     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 7.3e-16
  Fungal_trans  88 ssslwilqsLlllelyektss......dralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpplldd 178
                   ++ l ++q+L ++++y+ +s+         ++++++  a  +  s+gLh  +s ++      l+++ a  r R++w   + D+++++ +Grpp ++ 
    CDO73376.1 225 TT-LASIQTLIYMSIYLEMSDvepahtGSHKAWMLIRQATAMGLSIGLHVSSSKWQ------LDAAAAAKRSRIFWQLMMYDTWLSFGFGRPPSMSM 314
                   33.779***************8887754777788*****9**************99......*********************************** PP

  Fungal_trans 179 sqinlpLPcddddlwesd 196
                   s i+ + P ++d + + +
    CDO73376.1 315 SFIDNEVPTEEDAIVNEE 332
                   ********9999665554 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.4e-05      0.48       5      33 ..       8      36 ..       5      39 .. 0.87
   2 ?   -0.4   0.3      0.16   1.5e+03      20      35 ..     529     544 ..     505     568 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.4e-05
  ABC_tran_CTD  5 keqreleeleaeIeaLEeeiaeleaelad 33
                  k     e+  ++ e+LE+ +++l+a+++d
    CDO73376.1  8 KAAADVEKYKKRVEQLETALQALQAQVSD 36
                  6667789999*****************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.16
  ABC_tran_CTD  20 LEeeiaeleaeladpe 35 
                     +  ++ +a+l+d +
    CDO73376.1 529 VRKLRKQAQAALSDVQ 544
                   3333445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4726.16
//
Query:       CDO73377.1  [L=1108]
Description: hypothetical protein BN946_scf185013.g11 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-36  126.0   0.0    3.5e-23   82.0   0.0    3.8  2  An_peroxidase  Animal haem peroxidase


Domain annotation for each model (and alignments):
>> An_peroxidase  Animal haem peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   6.7e-13   1.2e-08       1      88 [.     170     250 ..     170     255 .. 0.92
   2 !   82.0   0.0     2e-27   3.5e-23     147     499 ..     255     629 ..     248     637 .. 0.66

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 6.7e-13
                    S--TTSTTSSTTSTTTT-TTEE-BBSS-----TCG.GTTS--....SHHHHHHHHCTB-SS---B.-SCBHHHHHHHHHHHCCC--B.E CS
  An_peroxidase   1 yrsidGscNnlknpewGsagtpfkRllpaaYedgvseprgssgselPsprevsnklladdeslpd.akltlllmqwgqfidhDltstpe 88 
                    +r++dGs Nn + p +G+agtp++R ++++Y        +   + lP+p +v  +ll+ ++++p+ +  + l+ ++   ++h l+ t  
     CDO73377.1 170 FRTADGSGNNPNMPMLGTAGTPYARSVQNKYPL------A--ANVLPDPSDVFDALLKARDFQPHpNGNSSLTFAFASLVTHQLFRTDP 250
                    79*****************************55......3..3579*******************889****************99875 PP

  == domain 2  score: 82.0 bits;  conditional E-value: 2e-27
                    EESS-SSSSSHHHH-SSHHHHHHHB-SSTT-B--EETT.CCCS-BSTTT-TT--S.-GCSB-SSSCCGCCBHHHHHHHHHHHHHHHHHHHHHHHH. CS
  An_peroxidase 147 lnqvTsflDasqvYGsseeearkLRsfkgGkLkvsskegkellPldeegedcaseeesecfkaGdsranenpgLlalhtlflReHNriAeeLkkl. 241
                     n+ Ts+lD s +YG se++++++R+ ++G+  +           d+ +               d+     p  +al +lf R+HN+iAe+L +l 
     CDO73377.1 255 KNNTTSYLDLSILYGMSEADQHTVRDRSSGRGLL---------YPDAFH--------------EDRLIFVPPAASALLVLFSRNHNYIAERLLALn 327
                    699**********************997654333.........221111..............1222235688999*****************998 PP

                    ..............-TTS-HHHHHHHHHHHHHHHHHHHHHCTHHHHHCSS......HHHHHH.TT-H............................. CS
  An_peroxidase 242 ..............nphwsdeelfqeARkiviAliqkItynewLpalLgk......enankyglllk............................. 288
                                  ++  +dee+fq AR++++  +  +++ +++  +Lg        ++n                                    
     CDO73377.1 328 ergrwsdpppedkgKRALQDEEIFQIARLVNCGNFMAMIFGDYVAGFLGLgrdgcsWSMNP-----Fdpittpeglpvtrgdgnhcsvefnilyrl 418
                    999999999999999*********************************9755444423333.....123333445544454444444444333333 PP

                    ....HHST-STTS----BHHHHHTHCGG...HHHHS-SEEEEE-.GCCS-EEEEEEGGGCCCHHH.....HHTTH-CHHHHHHHHCSB-B-STT-B CS
  An_peroxidase 289 ...gkykgydesvnpsisneFataafrf...ghslvpdeierldenkeiseeqklplkdsffnpa.....elleggldellrgllsqpaeavdqnl 373
                       ++ +      + + ++e  t af+     +  ++d++  ++  ++ +  ++ p k++ffn +     ++ ++ l+++l+  +++pa++     
     CDO73377.1 419 srpNQWHATTAAADIKWTEEIFTKAFQGkpiDKLELKDFVPAVT--NTWKAVEHDPRKRTFFNLKrgpdgRFSDDDLARVLQDATEKPAGTYRARG 512
                    22111122234555666666666666632213333445554444..22233333466666666662222333333455555555555555554443 PP

                    -HHHHTBBCSTTTTT-B-HHHHHHHHHHHCT--BHHHHHHHTT----SSCCCC-...SHHHHHHHHHHTTSCCCSBHHHHHHHS-B-TTB.....S CS
  An_peroxidase 374 teelrnklfkkseesglDlaalniqRgRDhGlpsYnefrrlcglkkaksfedlteeideeeleklkevYgsvediDllvGglaEkplpga.....l 464
                    + ++ +          +D++   + + R  G+ + nefr ++glk+  sfe+ +   d+e +++ +++Yg++++++l+ G+ aE+  p +      
     CDO73377.1 513 SPAVLR---------IVDMM--GMVQARQWGVCTMNEFRTFLGLKRFASFEEWNP--DKEIANAARQLYGHIDNLELYPGLQAEQIAPMGpgsglC 595
                    333333.........26775..4789****************************8..8888899********************855444444767 PP

                    SCHHH.HHHHHHHHHHHHHT-CCGTTTHCHHHHHTH CS
  An_peroxidase 465 vGptf.aciiadqfrrlrdgDRFfyenkkqpgvfte 499
                     G t+ ++i+ d+ + +r gDRF+++++++ g +t 
     CDO73377.1 596 CGYTMmRAILSDAIALVR-GDRFYTTDYTP-GNLTA 629
                    787761566666666666.******98654.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 7305.20
//
Query:       CDO73378.1  [L=715]
Description: hypothetical protein BN946_scf185013.g12 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-94  315.1   2.4    4.2e-93  311.8   2.4    2.0  1  DUF2235      Uncharacterized alpha/beta hydrolase domain (DUF
  ------ inclusion threshold ------
      0.074   12.9   0.8       0.12   12.2   0.8    1.2  1  Sigma70_ner  Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.8   2.4   4.7e-97   4.2e-93       1     288 []      64     457 ..      64     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 311.8 bits;  conditional E-value: 4.7e-97
     DUF2235   1 krlvlcfDGTgnkfdgdteesdsNvlklfralkrsdkdkkeqvvyYqpGiG.tetyellsslksaleklldgafgsgldehvveaYeflmrnyepgDeI 98 
                 ++lvlcfDGTg++fd+d     sNv+klf++lk++d+++  q+vyYq+GiG ++t+++++s+ ++++k++d++++++ld+hv+++Yeflm+nye gD+I
  CDO73378.1  64 RTLVLCFDGTGDQFDSD----TSNVIKLFSMLKKDDRRE--QMVYYQSGIGtYTTPQVTTSVGQFVSKTMDEMVAWNLDAHVMNGYEFLMQNYEAGDKI 156
                 79**************9....7**************877..**********544555699999************************************ PP

     DUF2235  99 ylfGFSRGAytaRalagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekkaekkekekasrsevkikflGvfDTVgslGipesallek 197
                 +lfGFSRGAytaRalagml+kvGll+++n++q+pfayk+y++    +d+ ++++s+         +++ka+  +v+i+f+Gv+DTV s+Gi+       
  CDO73378.1 157 CLFGFSRGAYTARALAGMLHKVGLLPPDNHQQIPFAYKMYTR----TDELGWKQST---------AFKKAFCIDVSIEFIGVWDTVCSVGII------- 235
                 ******************************************....6778888877.........67899**********************....... PP

     DUF2235 198 aakklpftdaklsssvkharhalaldErrakFkptlwekekekeekee................................................... 245
                   ++lpft +  ++ ++++rhal+ldErrakFk +++++++e e+k+                                                    
  CDO73378.1 236 -PHRLPFTAS--NTAIRTFRHALSLDERRAKFKANIYNRPTEWESKQGthpgdmprpvrrsqtkvamtklasaakarlrnvsastattavaatatapng 331
                 .2468***88..*************************9999777665599************************************************* PP

     DUF2235 246 ...................................................................................eekeqdlkevwFpGvH 261
                                                                                                     ++++d+kevwF+G+H
  CDO73378.1 332 avknivvaaaveekretvedddvkseaavaatetskavstssnqstfwatarnkfdtlrtlmrkkgkrlteeeeafdkadaiqCQSSTDVKEVWFAGCH 430
                 **********************************************************************************99999************ PP

     DUF2235 262 sdvGGGyeeneekeelsdipLawmvre 288
                 +dvGGG+  +e+ ++l +ipL+wm+re
  CDO73378.1 431 CDVGGGSVLDETPHALERIPLRWMIRE 457
                 *******999999************97 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   1.4e-05      0.12      31     117 ..     343     426 ..     317     431 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
  Sigma70_ner  31 Deeeeeeeeeeeedeeeeeee..edddeeeseseaadeeelkeealekfeelreqyeklrkalkkkgrkskkyekareelseefkefrL 117
                  +     e+ e  ed++ ++e+     + +++ s++ +++   + a++kf++lr++++k  k l +++++ +k+++ + + s  +ke+ +
   CDO73378.1 343 E-----EKRETVEDDDVKSEAavAATETSKAVSTSSNQSTFWATARNKFDTLRTLMRKKGKRLTEEEEAFDKADAIQCQSSTDVKEVWF 426
                  2.....22222222222222233333367899999**************************9999988888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4861.35
//
Query:       CDO73379.1  [L=531]
Description: hypothetical protein BN946_scf185013.g13 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-93  310.9   0.0      1e-92  310.6   0.0    1.1  1  DUF2235   Uncharacterized alpha/beta hydrolase domain (DUF223


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.6   0.0   5.6e-97     1e-92       1     288 []      58     378 ..      58     378 .. 0.96

  Alignments for each domain:
  == domain 1  score: 310.6 bits;  conditional E-value: 5.6e-97
     DUF2235   1 krlvlcfDGTgnkfdgdteesdsNvlklfralkrsdkdkkeqvvyYqpGiGtetyellsslksaleklldgafgsgldehvveaYeflmrnyepgDeIy 99 
                 ++lvlcfDGTg++fd+d    +sN++ +f++lk++d+++  q+vyYq+GiGt t +++s+l+++++klld +++++ld+hv ++Yeflm+ny+ gD+I+
  CDO73379.1  58 RTLVLCFDGTGDQFDAD----NSNIVAFFSLLKKDDRRE--QMVYYQTGIGTYT-SQVSPLRAKFDKLLDTMIAWHLDSHVQGGYEFLMQNYQAGDKIC 149
                 79**************9....8**************877..**********886.678***************************************** PP

     DUF2235 100 lfGFSRGAytaRalagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekkaekkekekasrsevkikflGvfDTVgslGipesalleka 198
                 lfGFSRGAytaRalagm++kvGll++ n++qvpfay++y++    +d+ ++++s+         ++++a+  +v+i+f+Gv+DTV+s+G++        
  CDO73379.1 150 LFGFSRGAYTARALAGMIHKVGLLPACNHQQVPFAYQMYTR----DDEVGWKQST---------AFKTAFCIDVDIEFIGVWDTVDSVGVF-------- 227
                 *****************************************....7888998887.........7899***********************........ PP

     DUF2235 199 akklpftdaklsssvkharhalaldErrakFkptlwekekekeekee.................................................... 245
                  ++lpft++  ++s++++rha+aldErra+F+ +l+++ +++++++                                                     
  CDO73379.1 228 PHRLPFTSS--NRSIRTFRHAIALDERRARFQVNLFKRGSKADAARGthpgdmprgdteyatavpvpgdphaaparspsesngnggngkaalqkkkkqr 324
                 2468***99..*************************9988777665599************************************************** PP

     DUF2235 246 ...........eekeqdlkevwFpGvHsdvGGGyeeneekeelsdipLawmvre 288
                            e+ ++d+ evwF+G+H+dvGGG+  ++  + l++ipL+wm+re
  CDO73379.1 325 efermfnrqngEQGTTDVLEVWFAGCHCDVGGGSVTDDVPHTLARIPLRWMIRE 378
                 **********999*********************999999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.52
# Mc/sec: 3073.02
//
Query:       CDO73380.1  [L=517]
Description: hypothetical protein BN946_scf185013.g14 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-86  289.6   0.0    4.4e-86  288.8   0.0    1.4  1  DUF2235   Uncharacterized alpha/beta hydrolase domain (DUF223
  ------ inclusion threshold ------
      0.098   12.6   0.0        2.3    8.1   0.0    2.1  2  BAAT_C    BAAT / Acyl-CoA thioester hydrolase C terminal


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8   0.0   4.9e-90   4.4e-86       1     288 []      68     405 ..      68     405 .. 0.95

  Alignments for each domain:
  == domain 1  score: 288.8 bits;  conditional E-value: 4.9e-90
     DUF2235   1 krlvlcfDGTgnkfdgdteesdsNvlklfralkrsdkdkkeqvvyYqpGiG.tetyellsslksaleklldgafgsgldehvveaYeflmrnyepgDeI 98 
                 ++lvlcfDGTg++f++d    +sN++ lf++l ++d+++  q+vyYq+GiG + t++++s+l+++++k+ld++++++l++hv ++Yeflm+ny+ gD+I
  CDO73380.1  68 RTLVLCFDGTGDQFNTD----NSNIVTLFSLLMKDDRNE--QMVYYQSGIGtYVTPQTVSPLRAKIDKVLDEMVAWNLASHVQGGYEFLMENYRAGDKI 160
                 79*************99....8*************9877..**********5456667***************************************** PP

     DUF2235  99 ylfGFSRGAytaRalagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekkaekkekekasrsevkikflGvfDTVgslGipesallek 197
                 +lfGFSRGAytaRalagm++kvGll++gn+eqvpfayk++++    +d+ ++++s+         +++k ++ +v+i f+Gv+DTV+s+G++       
  CDO73380.1 161 CLFGFSRGAYTARALAGMIHKVGLLPAGNHEQVPFAYKMFAR----DDELGWKQST---------AFKKVFSIDVDIDFIGVWDTVSSVGVI------- 239
                 ******************************************....7888998877.........6889***********************....... PP

     DUF2235 198 aakklpftdaklsssvkharhalaldErrakFkptlwekekekeekee................................................... 245
                   ++lpft++  ++ ++++rhal+ldErra+F+ +l+++++++++++                                                    
  CDO73380.1 240 -PHTLPFTSS--NTAIRVFRHALSLDERRARFQANLYHHPSKADAERGtkpgdmpkrdteyatrvgirvpnevngkakkpehkrtqseiqkqrqferqf 335
                 .2568***99..**************************999777665599************************************************* PP

     DUF2235 246 ......eekeqdlkevwFpGvHsdv.....................GGGyeeneekeelsdipLawmvre 288
                       ++ ++d+ evwF+G+H+                       GGG+  +++ + l++ipL+wm+re
  CDO73380.1 336 sqgdpdSDGQTDVLEVWFAGCHCGTsrfvrpfcmvsahiivrtvdvGGGSVTDDTPHTLARIPLRWMIRE 405
                 *****9999*************************************9999899989************97 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.017   1.5e+02     112     185 ..      65     137 ..      47     138 .. 0.82
   2 ?    8.1   0.0   0.00026       2.3       7      46 ..     144     182 ..     140     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.017
                 GG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB.-S---STT-----EEEETTTTEEEE- CS
      BAAT_C 112 ekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpka.GHliepPyfplceavlaklvgekvly 185
                   a++ +l + g+ D+    ++ + ++   L k  ++   q+++Y+++ G +++p  ++  +a++ k+++e v++
  CDO73380.1  65 HPARTLVLCFDGTGDQFNTDNSNIVTLFSLLMKDDRN--EQMVYYQSGiGTYVTPQTVSPLRAKIDKVLDEMVAW 137
                 5578889999999999888888887888888888777..689999876699****99999999999999998887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00026
                 HHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSE CS
      BAAT_C   7 eeainyllrhpkvkkdkigllGiSkGgelalllasflkki 46 
                 + ++++l ++ + ++dki l G S+G+ +a +la + +k+
  CDO73380.1 144 QGGYEFLMEN-YRAGDKICLFGFSRGAYTARALAGMIHKV 182
                 6678999988.7788*******************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3479.55
//
Query:       CDO73381.1  [L=491]
Description: hypothetical protein BN946_scf185013.g15 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-05   22.4   0.3    0.00041   20.2   0.3    2.1  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   2.3e-08   0.00041      36     124 .]     103     186 ..      63     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.3e-08
                      EEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS-...---EEE-GGGEE-HHHHHHHHHTT.EEE CS
  Polysacc_deac_1  36 tffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgr...eprlfryPygsasatvlevarelgfayv 124
                      t + ++ +  +y  +v+ ++ +G+ei+ Ht++h       +   ++e++ +  al++  g      + fr+P++ +s ++l+++++lgf+y+
       CDO73381.1 103 T-YYTSLNYTNY-TLVTDWYVAGNEIADHTMTHVGT---PP---EDEVAGNLIALNQLAGIplsSIKGFRAPFLNYSVDTLKMLAKLGFTYD 186
                      3.3333334444.799*****************983...33...345555555555555542117788*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3541.11
//
Query:       CDO73382.1  [L=325]
Description: hypothetical protein BN946_scf185013.g16 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00086   19.9   0.2     0.0019   18.8   0.2    1.5  1  TMEM135_C_rich  N-terminal cysteine-rich region of Transmembr
  ------ inclusion threshold ------
       0.15   12.1   8.1        1.7    8.7   2.2    2.3  2  COPI_assoc      COPI associated protein
       0.18   11.9   0.1       0.18   11.9   0.1    2.1  2  DUF4079         Protein of unknown function (DUF4079)
        2.5    8.2   4.0       0.72    9.9   0.7    1.8  2  Bee_toxin       Honey bee toxin
          3    7.8   8.6      0.069   13.1   0.8    2.1  3  RseC_MucC       Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> TMEM135_C_rich  N-terminal cysteine-rich region of Transmembrane protein 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   5.2e-07    0.0019      43     115 ..     175     246 ..     154     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.2e-07
  TMEM135_C_rich  43 vlrrrkidyklkklvkeilrsasfltanaalvlvlfcllrrllGklysslvGfgaalia...syiaillerksrrG 115
                     v+ rr +  k +k+v+ il+sa++ +a + ++++ + ++  +    ys  vG  ++li+   s+i + l r+sr  
      CDO73382.1 175 VISRR-FGLKHRKVVEAILQSAAIYSAASIVLIITYFISPTV---AYSACVGIFPSLIGlvfSFIVLRLARRSREN 246
                     66677.9****************9999888888777776654...69******99998755689999999999965 PP

>> COPI_assoc  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.2   0.00047       1.7       4      85 ..      32     128 ..      29     140 .. 0.73
   2 ?    6.6   0.4    0.0022       7.9      72     107 ..     202     239 ..     195     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00047
  COPI_assoc   4 frilnlvvgglaillgisqliil.........fsnflsfilsiYiillgivlillEfrvpfe......iykyfsfmfsylGRGlfyillgllvsygg 85 
                 + +l l++++++ + gi +++ +            +    ++++ ++++i +  +  +          + +++  ++s++GR+ f+i ++  ++ + 
  CDO73382.1  32 IEMLLLGAFSVTYASGIWSIMRVdyrgkpsrsDRVIAVASTTMWGLAFAITVSGIADNAGSLdavynaLTQQALWYHSAVGRARFIIYVSQTLIGDA 128
                 5677889999999999999999999999887423344447788888888887655444333336666899*******************97776553 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0022
  COPI_assoc  72 lfyillgllvsyggvlsilialllflvGLv..yillhl 107
                  +++++  ++s++  +s++++++  l+GLv  +i+l l
  CDO73382.1 202 SIVLIITYFISPTVAYSACVGIFPSLIGLVfsFIVLRL 239
                 577888899999999**************955555555 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.6      0.56     2e+03      46      46 ..      70      70 ..      25     129 .. 0.50
   2 ?   11.9   0.1     5e-05      0.18      11      74 ..     144     243 ..     142     271 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.56
     DUF4079 46 v 46
                +
  CDO73382.1 70 A 70
                2 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5e-05
     DUF4079  11 llvfpllgavaylG.wqtrqrrlqskaerkekipkkvrdeHvklgslllllvvlgaigglvlly................................... 73 
                 ++v+p + + +  G +++r+ r++ +    + i+ +++ +H k+ + +l  +++ +++++vl +                                   
  CDO73382.1 144 VVVLPAILVMVDAGlIMWRTLRSTYGPAAPKVISRRFGLKHRKVVEAILQSAAIYSAASIVLIItyfisptvaysacvgifpsliglvfsfivlrlarr 242
                 5677777777888999********************************888888888887776644666665556666666666555555566555444 PP

     DUF4079  74 l 74 
                  
  CDO73382.1 243 S 243
                 1 PP

>> Bee_toxin  Honey bee toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1         2   7.2e+03      10      23 ..      30      43 ..      27      45 .. 0.86
   2 ?    9.9   0.7    0.0002      0.72       8      27 ..     197     216 ..     191     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2
   Bee_toxin 10 lFlsviLitsYFVt 23
                lF+ ++L+ ++ Vt
  CDO73382.1 30 LFIEMLLLGAFSVT 43
                89999999999888 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0002
   Bee_toxin   8 iflFlsviLitsYFVtPtms 27 
                 i+   s++Li +YF+ Pt++
  CDO73382.1 197 IYSAASIVLIITYFISPTVA 216
                 666789************87 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         2   7.2e+03      87      87 ..      44      44 ..      22      83 .. 0.56
   2 ?   -1.2   0.2      0.51   1.8e+03      68     113 ..     116     162 ..     108     173 .. 0.47
   3 ?   13.1   0.8   1.9e-05     0.069      65     119 ..     192     245 ..     181     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
   RseC_MucC 87 a 87
                +
  CDO73382.1 44 Y 44
                2 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.51
   RseC_MucC  68 llvYllPllllilgallgsall.gssellaalgallglvlgflivrl 113
                 +++Y+   l+  +++++  ++  g ++ +++l a+l++v + li+++
  CDO73382.1 116 FIIYVSQTLIGDAFIIFRVYIIwGRKTKVVVLPAILVMVDAGLIMWR 162
                 55555544333222222222223455555555555555544444443 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.9e-05
   RseC_MucC  65 kaallvYllPllllilgallgsallgssellaalgallglvlgflivrllskrlk 119
                  +++ +Y    ++li+++++  ++ + s  + ++ +l+glv++f+++rl +++ +
  CDO73382.1 192 LQSAAIYSAASIVLIITYFISPTV-AYSACVGIFPSLIGLVFSFIVLRLARRSRE 245
                 45677899999*************.6**********************9998743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2314.90
//
Query:       CDO73383.1  [L=391]
Description: hypothetical protein BN946_scf185013.g17 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.73   10.0   4.2         15    5.8   1.1    2.4  2  ARL6IP6   Haemopoietic lineage transmembrane helix


Domain annotation for each model (and alignments):
>> ARL6IP6  Haemopoietic lineage transmembrane helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.002        35      45      68 ..      12      35 ..       6      42 .. 0.82
   2 ?    5.8   1.1   0.00083        15      44      68 ..     143     167 ..     140     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.002
     ARL6IP6 45 YlDsavPGvsPPsPfsprskkrfr 68
                 ++   P  sPP+ ++p+ k+rf 
  CDO73383.1 12 SINGTAPSDSPPTTLTPKRKARFS 35
                5666789999************96 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00083
     ARL6IP6  44 vYlDsavPGvsPPsPfsprskkrfr 68 
                   + s  P  sPP P+ prs++r+ 
  CDO73383.1 143 ALVSSGSPKASPPPPIPPRSRARSA 167
                 556788999************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2884.95
//
Query:       CDO73384.1  [L=702]
Description: hypothetical protein BN946_scf185013.g18 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-10   39.8   0.0    5.5e-10   39.5   0.0    1.2  1  O-FucT          GDP-fucose protein O-fucosyltransferase
  ------ inclusion threshold ------
      0.045   12.8   0.2      0.066   12.3   0.2    1.1  1  Glyco_hydro_28  Glycosyl hydrolases family 28
       0.19   11.2   0.0       0.32   10.5   0.0    1.2  1  Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofa


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   9.2e-14   5.5e-10     192     320 ..     317     463 ..     207     477 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 9.2e-14
      O-FucT 192 ylalHLRrekDflaaCehgggeeellaspre.................s.rreegkltpeecvpsleeialqlkgllkel...kltsvfvAtdeiygge 269
                  +a+H Rr+ D+l  C+   +++e++ s                       r +    +e+c+ps++ei++++ ++       ++++ ++ t  +++ +
  CDO73384.1 317 LMAIHVRRG-DYLEHCTSLTDHREEFVSVNSlpgladtftapngflfgElTRADRMRYRERCFPSIDEIVRKVEEVRATPegnDIRRMYIMTNGKRE-F 413
                 589******.*********9999999999999*******999887655245666669**************99887554433399********9885.7 PP

      O-FucT 270 elkelkkefpnlvkvtkeklaskeelekfkdgsva.aiDqiicsrsdvFigt 320
                  ++elk+++ +  + +  + +   +l  +++++va a+D++++ r++vFig+
  CDO73384.1 414 -VDELKDALHRAGQWDLVSSSRDMDL-TLEQKYVAqAVDMLVAQRAQVFIGN 463
                 .********88557766665555555.788888888***************8 PP

>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   1.1e-05     0.066      26     137 ..     562     681 ..     542     691 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
  Glyco_hydro_28  26 plksgttvtlegtttak........vkekngkddivisgekitvlgisGk.....gtidGqGqawwdgkgkkkkegkkkpkflvikkvknskikn 107
                     p++++++v +eg++++             +g+  ++++++  +++ + G+     g +d +Gqawwd   +      + p+   ++k++n  i +
      CDO73384.1 562 PVLNNVEVRIEGNLSYPddiatiqaIVGASGFPGAWFAFTGGNNVTLRGSqdpqwGWVDAHGQAWWDAVQQ-----TNRPHGWAFSKITNGVIRD 651
                     588888999999988877888887744455555999999999999999964444568**********8765.....899**************** PP

  Glyco_hydro_28 108 lniknspvfhfsvesgkdltisditidasa 137
                     +++       f  +++k++++ d +i a +
      CDO73384.1 652 MKLWKPIGWNFATSGSKNVHVFDNKIVAVS 681
                     ****99999**********99888876655 PP

>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.3e-05      0.32      28      94 ..     388     453 ..     375     488 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.3e-05
  Porphobil_deam  28 veivtiktkGDkildkpLakiggkglFtkeleeaLle.geidlaVhSlKDlptelpeglelaavlkre 94 
                     ve v  + +G  i+ +     +gk  F++el++aL + g+ d +V S +D++ +l+++ +  av    
      CDO73384.1 388 VEEVRATPEGNDIR-RMYIMTNGKREFVDELKDALHRaGQWD-LVSSSRDMDLTLEQKYVAQAVDMLV 453
                     55666666777777.455566899***********9736666.599***********99998885544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5339.51
//
Query:       CDO73385.1  [L=597]
Description: hypothetical protein BN946_scf185013.g19 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-38  131.4   1.1    5.8e-34  117.8   0.0    2.9  3  tRNA-synt_His    Histidyl-tRNA synthetase
    9.1e-11   41.8   0.2    1.9e-10   40.8   0.2    1.6  1  HGTP_anticodon   Anticodon binding domain
    0.00017   21.2   0.1     0.0012   18.4   0.1    2.0  2  HGTP_anticodon2  Anticodon binding domain of tRNAs
  ------ inclusion threshold ------
       0.11   12.6   2.4       0.35   11.1   2.4    1.9  1  WHEP-TRS         WHEP-TRS domain
        0.2   11.1   0.0       0.31   10.5   0.0    1.2  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.6      0.17     6e+02     188     234 ..      11      55 ..       2      70 .. 0.60
   2 !  117.8   0.0   1.6e-37   5.8e-34       1     276 [.      79     362 ..      79     367 .. 0.87
   3 !   10.4   0.2   7.8e-05      0.28     280     310 .]     421     461 ..     414     461 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.17
                    HHHHCCTTHHHCCHCC....HCCHCCCHHHHCHCCHCTHHHHHHHHHH CS
  tRNA-synt_His 188 elaaeaglkealrellkal.elygdaevleealealaaapalqaalde 234
                    +la+e +   ++ +ll+ l + + d+ v+eea+++l + ++  a+l++
     CDO73385.1  11 SLASEVA---TQSALLNDLrKQQADPAVVEEARKKLGDLKRNLALLQN 55 
                    4444432...33445555556667777777777777666554444444 PP

  == domain 2  score: 117.8 bits;  conditional E-value: 1.6e-37
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHHHS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHHTSS-EEEEEEEE CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedldqtfklvDqsgrllglRaDiTpqvaRiaahrlnrerplRlcYaGs 96 
                    g+rd  p+e+  +e+++r + d f ++G ++  +P++E+ + l  + ged++ +f l+Dq g++l+lR D T+  aR+ a + +  + ++l+  G+
     CDO73385.1  79 GTRDYGPAEMFCREHIERIVKDCFTTYGGSQLDTPVFERKEILAGKYGEDAKLIFDLMDQGGEQLALRYDHTVPLARYLAMSGAITTQAKLWQVGK 174
                    789********************************************************************************************* PP

                    EEESS-SS..TT--CCEEEEEEEEESS-.SHHHHHHHHHHHHHHHHHHCTSSSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHH... CS
  tRNA-synt_His  97 vlrtrpdg..lgrsreplQvGaEliGae.gleadlEvlslllealeaaagvkelrldlghvglvralleaaglsesleeallaalarkdlael... 186
                    v+r+ +     gr re+ Q+   + G+  ++  d+E++ ++ ++l+  + v e++++++h ++++ ++e +g+++++ + + +a+++ d  +    
     CDO73385.1 175 VYRRDNPVmsKGRMREFSQADFDIAGTFdTMIPDAEIIGMVCAILS-RLDVGEFTIKMNHRKILDGIFEVCGVPPEKIRPISSAVDKLDKMSWadv 269
                    **99887633579*************9737777************6.********************************99999888776554111 PP

                    .HHHHHCCTTHHHCCHCC....HCCHCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHH..H-TTEEE-TT--TTTTT--SEEEEEEETT CS
  tRNA-synt_His 187 .kelaaeaglkealrellkal.elygdaevleealealaaapalqaaldeleelaallealak..pevrvtlDlaelrgyeYytGlvFaayaeg 276
                     ke+++e+gl++a+++ +  + + +g++e l+ ++++ a   + ++a+  +ee+  l+  l+      r+++Dl++ rg++YytG++++a++e 
     CDO73385.1 270 kKEMTEEKGLDPAAADKIGEYvKHKGGPELLDLLRADEALMAN-ANAKIGVEEMGILFGYLKVynVMDRISFDLSLARGLDYYTGIIYEAIVEA 362
                    247888999************9999999988766654444433.345555555555555554443679**********************9985 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 7.8e-05
                    -SEEEEEECTTTGGGT---..........EEEEEEEEHHHH CS
  tRNA-synt_His 280 aiarGGrYdelgaafgrar..........pAtGfsldleal 310
                     ia GGrYd+l++ f +a+          p++G s+ l+++
     CDO73385.1 421 SIAAGGRYDNLVGLFTAAAagegkkapglPCVGISIGLDRI 461
                    79*************55432445555555888888888775 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.2   5.2e-14   1.9e-10       3      93 ..     482     583 ..     480     584 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 5.2e-14
                     EEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEET............TTC.EEEEEE CS
  HGTP_anticodon   3 vviplnekaeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdr............dtr.eqervs 83 
                     +v++ ++    l+e++ +l +eLr+agi++++   ++ ++  ++   ++  +pfa+++G +el++g vtv++             +++ + ++++
      CDO73385.1 482 YVMAAGD---GLLEERVRLVQELREAGIKADFMLkRKPKLPAQFDAGERDEVPFAIIIGVDELKEGLVTVKEQkwhfvdgkkvkiESEnKGIKIK 573
                     6777777...899***********************************************************99999876666654442338999 PP

                     TTHHHHHHHH CS
  HGTP_anticodon  84 ldelveklke 93 
                     ++el+++lk+
      CDO73385.1 574 RAELIQWLKD 583
                     9999999886 PP

>> HGTP_anticodon2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.15   5.5e+02      77     139 ..     329     395 ..     326     427 .. 0.38
   2 !   18.4   0.1   3.3e-07    0.0012       9     101 ..     482     583 ..     476     591 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
  HGTP_anticodon2  77 lkvkslekkedvdldldelvswlkqeirere.kereesaksskssaessqkedeass...esseele 139
                      lkv +++    +dl+l+  ++++   i e   + +   a ++++  +ss+++ + s+    +s++++
       CDO73385.1 329 LKVYNVMDRISFDLSLARGLDYYTGIIYEAIvEASAPPAFKNANAFASSSATPSVSNatpPESQQSK 395
                      5666666666666666666666666554433222222222222111111111111111121111111 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.3e-07
  HGTP_anticodon2   9 lVasfdksiLrtsgvellqeLWahnIsAdlaldasksleelvskarddgvswiviikqqn..........kskskekplkvkslekkedvdldl 92 
                      +V+   + +L +++v+l+qeL + +I+Ad++l+ +  l    +  ++d+v + +ii  ++          ++ +   + kvk  ++++ + ++ 
       CDO73385.1 482 YVMAAGDGLL-EERVRLVQELREAGIKADFMLKRKPKLPAQFDAGERDEVPFAIIIGVDElkeglvtvkeQKWHFVDGKKVKIESENKGIKIKR 574
                      5677777788.99**********************9*********************99999***99765333334566999999********* PP

  HGTP_anticodon2  93 delvswlkq 101
                      +el++wlk 
       CDO73385.1 575 AELIQWLKD 583
                      *******85 PP

>> WHEP-TRS  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.4   9.7e-05      0.35       1      43 [.      12      54 ..      12      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.7e-05
    WHEP-TRS  1 LnekiaaQGelVRkLKaekapkdeidaaVkkLLaLKaqykalt 43
                L +++a Q  l  +L++++a+ + +++a kkL +LK ++  l+
  CDO73385.1 12 LASEVATQSALLNDLRKQQADPAVVEEARKKLGDLKRNLALLQ 54
                6789********************************9998776 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.5e-05      0.31      77     134 ..     139     201 ..      89     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.5e-05
                   ECESEEE-SSTHHHHHHHH...TTS-SSEEEEEEEEEEBSST..-SSSB-SEEEEEEEEEEET CS
  tRNA-synt_2d  77 veekllLRthttavqirtl...ekkkppikiisigrvfRrda..vDathlaeFhqveglvvde 134
                     e+l LR   t   +r+l    + +  +k+  +g+v+Rrd+  + + ++ eF q+++ ++++
    CDO73385.1 139 GGEQLALRYDHTVPLARYLamsGAITTQAKLWQVGKVYRRDNpvMSKGRMREFSQADFDIAGT 201
                   45689999999999999998776778999************9877888999****99866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4614.17
//
Query:       CDO73386.1  [L=156]
Description: hypothetical protein BN946_scf185013.g20 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-06   27.4   0.0     0.0001   22.9   0.0    2.2  2  Ank_2     Ankyrin repeats (3 copies)
    4.5e-06   26.6   0.1        0.5   11.1   0.0    3.9  4  Ank_3     Ankyrin repeat
    3.4e-05   24.0   0.1      0.072   13.4   0.0    3.6  3  Ank_5     Ankyrin repeats (many copies)
    5.3e-05   23.7   0.0       0.33   11.6   0.0    3.2  3  Ank_4     Ankyrin repeats (many copies)
    7.2e-05   23.1   0.0      0.011   16.2   0.0    3.0  2  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.069   2.5e+02      57      83 .]      12      39 ..       4      39 .. 0.79
   2 !   22.9   0.0   2.8e-08    0.0001       5      57 ..      41     109 ..      40     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.069
       Ank_2 57 LhyAarsghleivklLlek.gadinlkd 83
                L +Aars++++++   +e  ++din++d
  CDO73386.1 12 LLAAARSDNEDMLLQVFEEgNFDINAQD 39
                7789999999999999965488999887 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.8e-08
       Ank_2   5 akngnlelvklLl..egadpn..k..ngktaLhyAakngnlei....vklLleh......adndgrtpL 57 
                 a+ g+l+++++Ll   g+d++  +  ++ t+Lh+A k  + e+    v+ Lle+       d++g+t++
  CDO73386.1  41 ASRGYLDIMEHLLeyDGCDVDpqNriEKATPLHLAMKIEDPELrkavVSSLLEAgadtkiKDKNGETAI 109
                 45677899*****9988999985378999********88777544448999986755555559999996 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0067        24       6      31 .]      12      37 ..       8      37 .. 0.87
   2 ?    4.5   0.0     0.019        68      11      30 ..      42      61 ..      41      61 .. 0.86
   3 !   11.1   0.0   0.00014       0.5       3      28 ..      69      97 ..      67     100 .. 0.82
   4 ?   -0.6   0.0      0.92   3.3e+03      16      23 ..     118     124 ..     104     131 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0067
       Ank_3  6 LhlAarsgnleivkfLlenkgadvna 31
                L  Aars+n +++   +e+ + d+na
  CDO73386.1 12 LLAAARSDNEDMLLQVFEEGNFDINA 37
                677********988888889999996 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.019
       Ank_3 11 rsgnleivkfLlenkgadvn 30
                + g l+i++ Lle  g+dv+
  CDO73386.1 42 SRGYLDIMEHLLEYDGCDVD 61
                667789************96 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00014
       Ank_3  3 etpLhlAarsgnle....ivkfLlenkgad 28
                 tpLhlA++  ++e    +v  Lle  gad
  CDO73386.1 69 ATPLHLAMKIEDPElrkaVVSSLLE-AGAD 97
                69***********743345******.8998 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.92
       Ank_3  16 eivkfLle 23 
                 e +++Ll+
  CDO73386.1 118 E-IRALLR 124
                 3.888888 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.69   2.5e+03      36      47 ..      28      40 ..      13      43 .. 0.61
   2 !    5.0   0.1     0.009        32      24      55 ..      41      74 ..      29      75 .. 0.67
   3 !   13.4   0.0     2e-05     0.072      32      55 ..      88     111 ..      84     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.69
       Ank_5 36 l.argadlnltds 47
                + + + d+n++d+
  CDO73386.1 28 FeEGNFDINAQDG 40
                2556666666664 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.009
       Ank_5 24 akygaadvvrlLl.argadlnltdsrG.ltaldl 55
                a++g++d+++ Ll   g+d + ++     t+l+l
  CDO73386.1 41 ASRGYLDIMEHLLeYDGCDVDPQNRIEkATPLHL 74
                5678888888888444555555555444555554 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 2e-05
       Ank_5  32 vrlLlargadlnltdsrGltaldl 55 
                 v  Ll+ gad++++d++G+ta+dl
  CDO73386.1  88 VSSLLEAGADTKIKDKNGETAIDL 111
                 55689*****************98 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.062   2.2e+02       3      32 ..      10      39 ..       8      43 .. 0.74
   2 !   11.6   0.0   9.3e-05      0.33       9      49 ..      41      82 ..      39      86 .. 0.86
   3 !    6.5   0.0    0.0035        13      16      40 ..      87     110 ..      84     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.062
       Ank_4  3 taLhyaaisgrlelvrlLlek.gadinaqdn 32
                + L +aa s +++++   +e  + dinaq +
  CDO73386.1 10 ERLLAAARSDNEDMLLQVFEEgNFDINAQ-D 39
                55778888999999777778745999999.5 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.3e-05
       Ank_4  9 aisgrlelvrlLlek.gadinaqdn.rsGetalhiAakrgnve 49
                a+ g l++ + Lle+ g d++ q n ++  t+lh A k++++e
  CDO73386.1 41 ASRGYLDIMEHLLEYdGCDVDPQ-NrIEKATPLHLAMKIEDPE 82
                56889999999**9989******.647788******9999876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0035
       Ank_4  16 lvrlLlekgadinaqdnrsGetalh 40 
                 +v +Lle gad    ++++Geta++
  CDO73386.1  87 VVSSLLEAGADTKI-KDKNGETAID 110
                 7899*******444.6*******85 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.029     1e+02      11      31 ..      42      64 ..      13      65 .. 0.81
   2 !   16.2   0.0   3.1e-06     0.011       4      31 ..      70     102 ..      69     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.029
                HHTTHHHHHHHH..TTTSTTCBT CS
         Ank 11 tngkkriiklLL..hGAnlnald 31
                ++g ++i + LL  +G++++ ++
  CDO73386.1 42 SRGYLDIMEHLLeyDGCDVDPQN 64
                36778999999996699998766 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.1e-06
                 BHHHHHHHHTT....HHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngk....kriiklLL.hGAnlnald 31 
                 TPLHlA  + +    k +++ LL  GA+  ++d
  CDO73386.1  70 TPLHLAMKIEDpelrKAVVSSLLeAGADTKIKD 102
                 9****985555555666******88***98888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1356.26
//
Query:       CDO73387.1  [L=487]
Description: hypothetical protein BN946_scf185013.g21 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-22   79.6   0.1    1.1e-19   70.9   0.0    2.8  2  Amidohydro_1  Amidohydrolase family
    1.7e-08   34.4   1.6    1.7e-05   24.5   0.0    2.9  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.3e-23   1.1e-19       1     297 [.      94     404 ..      94     406 .. 0.80
   2 !    5.0   0.0    0.0014        12     303     343 ..     438     478 ..     435     479 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.3e-23
                   EEEE-EEEEEEECETTECSSSGHHHHH..STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.HHHHHHHHHHT...SSSEEEEEEE.SSEGGS.. CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwl..vppetaaealesgiktalksGtttvadmgattst.giealleaaee...lplglrilgg.kvsldr.. 88 
                   +vlPG++DaHvHl+  ++ ++t ed l  ++  +  + +  ++k++l++G ttv+d g+   + ++  l++ ++    l++g+r + + + +++   
    CDO73387.1  94 TVLPGFVDAHVHLFLHPYAETTWEDQLtkESLVERTVRATVHAKQTLMAGYTTVRDLGTEGAEdADIQLRKCLSGpapLIPGPRYFCAnRAIIASgs 190
                   69***********8665544466666644444444455556789***************999966666666666699999999965550444444** PP

                   ........................GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHH.......HHHHHHHHHHHHTTEEEEEETS CS
  Amidohydro_1  89 ........................gsaetskasreklkagaaetikgkadgvvkvalapheapafsde.......elkealkeakkrdlpvaiHale 154
                                           g+ e+ ka+r+++ ag a++ik+ ad +v + +++ ++   ++        el+++++ a++ +++va+Ha++
    CDO73387.1 191 ygpksnlhlhqdgvecvtgaefvdGEVECIKAVRKQVGAG-ADWIKVYADYRVRTRMTDVAPKISGATiqtfasnELRALVNTARQLGVKVAAHASN 286
                   ****************************************.8**********99888888777766667777788********************** PP

                   SCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSC.EEEEEECT. CS
  Amidohydro_1 155 tkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvk.vglgtDga. 249
                    ++e    e+++++t ehg  +   e l+ +++ k+i +    +  t     + ++k  g           +  ++++ +al +Gv  ++ g D   
    CDO73387.1 287 WRAEL-LPEHGGVDTLEHGNGFGSDELLDSIKKSKIIWVPTLSVFYT-----NDAAKAPGGL--------WDRTSRNFQRALANGVTnIACGGDTGp 369
                   ****9.************99988855555555545543333222233.....3333333333........799999********9988******667 PP

                   .TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHT CS
  Amidohydro_1 250 .asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkal 297
                     +g+++    e++l++           + g ++k++lr+aT++g +++
    CDO73387.1 370 fPHGDNA---LEMKLMV-----------RLGADWKHVLRWATLGGWQCV 404
                   8888888...89*****...........9****************9986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0014
                   SSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 303 vGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGkl 343
                    G i+ G+ AD+v+  +d+  +f+   ++  ++ v+++G++
    CDO73387.1 438 FGVIKRGFAADIVATRGDLEQDFERAVDKSHITFVMKGGRI 478
                   699************9999******************9986 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.9e-09   1.7e-05       3      66 ..      88     144 ..      86     187 .. 0.66
   2 !    7.7   0.1   0.00024       2.1     226     283 ..     226     284 ..     194     290 .. 0.85
   3 ?   -0.7   0.0     0.081   7.3e+02     432     471 ..     439     478 ..     432     479 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.9e-09
  Amidohydro_3   3 iDakGrlvlPGFvDsHtHlagggvnlrllrlpd.arvtslegvltavrdqagttpkgrwivgeGw 66 
                   +D++ ++vlPGFvD+H Hl+ +   ++++ ++d  ++ sl + + ++  +a++       ++ G+
    CDO73387.1  88 VDLRDATVLPGFVDAHVHLFLHP--YAETTWEDqLTKESLVERTVRATVHAKQ------TLMAGY 144
                   8*****************99986..6555555503344332222222222222......344555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00024
  Amidohydro_3 226 seeltigavklfadgvlgsrtalltepyf.tgwpdfedealaelvaaadergldvaiha 283
                   + +  ++ +k+ ad   + r   ++  ++  ++++f + +l++lv+ a++ g+ va ha
    CDO73387.1 226 QVGAGADWIKVYADYRVRTRMTDVAPKISgATIQTFASNELRALVNTARQLGVKVAAHA 284
                   4557889999999998888888888888899***************************8 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.081
  Amidohydro_3 432 GtLevGadADlvvldadp.ldvdppelaearvrltvvdGrv 471
                   G ++ G+ AD+v  + d+  d++ + + +  +  ++++Gr+
    CDO73387.1 439 GVIKRGFAADIVATRGDLeQDFERA-VDKSHITFVMKGGRI 478
                   889***********95551445544.333347777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3654.88
//
Query:       CDO73388.1  [L=298]
Description: hypothetical protein BN946_scf185013.g22 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-09   38.0   0.0    2.4e-09   37.5   0.0    1.3  1  DUF1115   Protein of unknown function (DUF1115)


Domain annotation for each model (and alignments):
>> DUF1115  Protein of unknown function (DUF1115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.3e-13   2.4e-09       2      63 ..     165     224 ..     164     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.3e-13
     DUF1115   2 vfriksLsnpkhrfkvdknAkqlsltGvvllgpkfnlvvveGgekaikkYkklmlrrikWte 63 
                 +f +++L++p++r+ ++++A++lsl G+  +g++ ++++ eG +++++ + +++ + ++W  
  CDO73388.1 165 LFTSHHLKSPQKRRSLSQWAHELSLMGFSKVGYP-GVIYCEGAREDVEDFVSRV-KSMQWLA 224
                 799*******************************.*******************.*****74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2199.82
//
Query:       CDO73389.1  [L=244]
Description: hypothetical protein BN946_scf185013.g23 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-17   61.9   0.0    5.1e-17   61.5   0.0    1.2  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.066   12.8   0.0      0.094   12.3   0.0    1.1  1  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   5.7e-21   5.1e-17       2      67 ..      71     137 ..      70     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 5.7e-21
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggr 67 
                  V++L++ v+ ++L++ F k+G++k++++++d   + s+gf+fV++es e+A++A+ a+ng +++g+
  CDO73389.1  71 HVSGLSHKVDTRDLEAAFAKVGRVKKASVMYDpHSRESRGFGFVTMESVEEADAAITAMNGAEIMGK 137
                 599**************************************************************98 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05     0.094      12      92 ..      52     137 ..      42     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
       RRM_5  12 vaatgs.pgaagvaegsVllVyglepdkvnldklFnlfclYgnvervkfl.....ktkketalvqmgdasaveravqHLnnaklfgk 92 
                 +a ++      g++ g  l V+gl + kv +  l   f+  g v++  ++     +  ++  +v m +  +++ a++ +n+a++ gk
  CDO73389.1  52 PARNADgRDEGGNNPGNNLHVSGLSH-KVDTRDLEAAFAKVGRVKKASVMydphsRESRGFGFVTMESVEEADAAITAMNGAEIMGK 137
                 44444444567888888999****86.68999999***************554334567889**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1849.02
//
Query:       CDO73390.1  [L=134]
Description: hypothetical protein BN946_scf185013.g24 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-44  147.9   0.3    9.6e-44  147.6   0.3    1.1  1  COX5A     Cytochrome c oxidase subunit Va


Domain annotation for each model (and alignments):
>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.3   5.4e-48   9.6e-44       2     102 ..      34     132 ..      33     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 5.4e-48
       COX5A   2 eetdeefdaryekfferediDlfelrrglnnlfayDlvPepkvieaalracrrvndfalavRilEavkekvenkkqiYeyllqelkpvleeLgistkee 100
                 +et+e+f++ry++ff++++ Dlfe++rglnn+fa+DlvP+p+vieaa+ra+rrvnd+a+avRi+E++kekvenk+q Y+++l+elkp++eeLgi+++ee
  CDO73390.1  34 QETFESFNERYVEFFKSAQ-DLFEVQRGLNNCFAHDLVPAPSVIEAAVRAARRVNDYATAVRIFEGIKEKVENKQQ-YQAYLDELKPLREELGINIREE 130
                 79*****************.********************************************************.********************** PP

       COX5A 101 lg 102
                 l+
  CDO73390.1 131 LY 132
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1017.31
//
Query:       CDO73391.1  [L=502]
Description: hypothetical protein BN946_scf185013.g25 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-11   41.1   0.1     0.0037   16.9   0.0    3.6  3  PUF       Pumilio-family RNA binding repeat


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.001        18      10      34 ..     339     363 ..     339     364 .. 0.91
   2 !   16.9   0.0   2.1e-07    0.0037       1      27 [.     382     408 ..     382     416 .. 0.86
   3 !   14.6   0.0   1.1e-06     0.019      10      27 ..     431     448 ..     429     453 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.001
                 HTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF  10 stdqyGnyvvQkllehateeqkkli 34 
                 s+dq ++ ++Q+ l++a++e++ +i
  CDO73391.1 339 SSDQQASIFLQQKLKVADPEERGKI 363
                 689999***************9988 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.1e-07
                 HHGGGHHHHHTSTTHHHHHHHHHHHSC CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehat 27 
                 sikg + +L+++  G+ vvQ+ +e ++
  CDO73391.1 382 SIKGQWASLACHETGSLVVQHAFENLE 408
                 6899999****************9754 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.1e-06
                 HTSTTHHHHHHHHHHHSC CS
         PUF  10 stdqyGnyvvQkllehat 27 
                 +++q+G+y vQ++leh +
  CDO73391.1 431 AKNQWGSYCVQHILEHGS 448
                 89*************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3685.69
//
Query:       CDO73392.1  [L=639]
Description: hypothetical protein BN946_scf185013.g26 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-76  256.1   0.0    4.5e-76  255.7   0.0    1.2  1  Pkinase          Protein kinase domain
    1.4e-40  139.2   0.0      2e-40  138.7   0.0    1.2  1  Pkinase_Tyr      Protein tyrosine kinase
    1.4e-17   64.3   1.0    1.9e-10   41.2   0.0    3.4  3  AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
    8.2e-13   48.3   0.3    2.1e-12   46.9   0.1    1.8  2  UBA_2            Ubiquitin associated domain (UBA)
    8.1e-07   28.6   0.0    1.2e-06   28.0   0.0    1.3  1  Kinase-like      Kinase-like
    0.00041   20.0   0.1     0.0008   19.1   0.1    1.4  1  RIO1             RIO1 family
     0.0014   17.7   0.1     0.0021   17.1   0.1    1.2  1  Haspin_kinase    Haspin like kinase domain
  ------ inclusion threshold ------
      0.047   13.6   2.5       0.33   10.9   0.6    2.6  3  APH              Phosphotransferase enzyme family
       0.12   11.1   0.1       0.17   10.7   0.1    1.2  1  YukC             WXG100 protein secretion system (Wss), prote
       0.49   10.5   2.9       0.77    9.8   2.9    1.3  1  YL1              YL1 nuclear protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   0.0   2.5e-79   4.5e-76       1     264 []      17     268 ..      17     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 255.7 bits;  conditional E-value: 2.5e-79
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+++ ++ eG+fGkV  av++ tg++vA+K i+k+ + k ++ ++v+rE++++++l+hp+i++lyev+++++++++vley+  gel++++ ++g +se 
  CDO73392.1  17 YTVVGEIAEGTFGKVKMAVHTVTGQKVAMKFISKQAIAKHRTkTRVQREVEYMRTLRHPHIIKLYEVISTPTDIIIVLEYAG-GELFNYIVANGRMSEP 114
                 67788999***************************9988877799***********************************98.67************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkpp 196
                 +a+++++q+++g+ey H+ +i+HrDlKpeN+L+d++ ++Ki+DFGl++e++ +  l++ +g+++Y APEv+++  y ++++DvWs+Gvily +l+g+ p
  CDO73392.1 115 QARRFFQQLISGIEYSHHLKIVHRDLKPENVLLDDDLNVKIADFGLSNEIKDGDFLKTSCGSPNYAAPEVIRGGLYtGPEIDVWSCGVILYVMLCGRLP 213
                 ***********************************************************************877777********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 f++++ ++ ++k+ +               ++ +s +s +ak+l++ +l++dp kR+t+ e++qhp++
  CDO73392.1 214 FEDDDVQTLFTKISQ-------------GVYHLPSYLSADAKNLINGMLAVDPVKRITIPEIMQHPWF 268
                 **4444443333333.............3578899********************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   1.1e-43     2e-40       5     257 ..      21     264 ..      17     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 1.1e-43
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                   +++eG+fGkV ++  +     + +kVa+K ++++a  ++++k+++ +e++ m++l+hp+i+kl+ v++    ++iv+ey+ gG+L +++ ++   ++
   CDO73392.1  21 GEIAEGTFGKVKMAVHT----VTGQKVAMKFISKQAiaKHRTKTRVQREVEYMRTLRHPHIIKLYEVISTPTDIIIVLEYA-GGELFNYIVAN--GRM 111
                  5799**********999....89999*****9776511555588999********************************96.89********9..99* PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEH.HHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkfts.ksDvWsfGvllwE 197
                  +  +  +f +q+ +G+ey ++ k+vHrdl   NvLl+++  vki+DfGL+++i kd +   k+++  + ++ apE+++ + +t  + DvWs Gv+l+ 
   CDO73392.1 112 SEPQARRFFQQLISGIEYSHHLKIVHRDLKPENVLLDDDLNVKIADFGLSNEI-KDGDF-LKTSC-GSPNYAAPEVIRGGLYTGpEIDVWSCGVILYV 206
                  *****************************************************.33333.34444.4569***********995389**********8 PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +++ g+ p+++ + +++++k+++g   + p++ +++ ++l++  ++ dp +R t+ e+++
   CDO73392.1 207 MLC-GRLPFEDDDVQTLFTKISQGV-YHLPSYLSADAKNLINGMLAVDPVKRITIPEIMQ 264
                  888.*****************8875.5679999*********************999976 PP

>> AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.1e-13   1.9e-10       1      32 [.     466     497 ..     466     502 .. 0.95
   2 !   13.2   0.2   5.3e-05     0.095      54      85 ..     547     579 ..     531     599 .. 0.77
   3 !    6.7   0.0    0.0055       9.8      90     117 .]     607     634 ..     587     634 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.1e-13
                      SEEESEEEES-HHHHHHHHHHHHHHTTEEE-- CS
  AdenylateSensor   1 rWhfGirsrsypldvlgeiyralknlGaewak 32 
                      +WhfGirsrs p++v+ eiyr+lk+lG ew +
       CDO73392.1 466 KWHFGIRSRSPPMEVMLEIYRTLKTLGMEWKE 497
                      8*****************************75 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.3e-05
                      T--EEEEEEEEEEEEETTEEEEEEEEE.EEEES CS
  AdenylateSensor  54 nkedlmkleiqlfqlepnnylvdfkfd.Gwess 85 
                       +++++ +++ql+ + + nylvdf+    ++ s
       CDO73392.1 547 VQDVVVLMNLQLYMVDSINYLVDFHHKkTYKAS 579
                      4456789*****************865145544 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0055
                      TTTTTSSTTS---STTHHHHHHHHHHHH CS
  AdenylateSensor  90 eetaeededevssayPflhlatrlilel 117
                       +  +  +dev+s y f+++a+rlilel
       CDO73392.1 607 VKDLNMRDDEVVSPYIFMDVACRLILEL 634
                      233344457799**************98 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.3   1.3e+04      33      38 ..     161     166 ..     160     167 .. 0.85
   2 !   46.9   0.1   1.2e-15   2.1e-12       1      45 [.     310     354 ..     310     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.3
       UBA_2  33 sneIkD 38 
                 sneIkD
  CDO73392.1 161 SNEIKD 166
                 69***9 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 1.2e-15
       UBA_2   1 IdedvvsaLsktM.GYdkdeIieaLekaekskssneIkDAYlLmkE 45 
                 I+++vv+ L+++M G dk++++e+L++++   ++n++k AY+L+++
  CDO73392.1 310 IEDEVVEDLASRMeGVDKEDVWESLRRDDGP-QGNAVKVAYMLLRD 354
                 89*****************************.************96 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.9e-10   1.2e-06     145     282 ..     116     250 ..      99     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.9e-10
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlvi 240
                  ar     qli  + + +++ +vh +++++n+lld +  +++ +f+  + +++g+  + s     +a pE++   g yt         ++d+W  G+  
   CDO73392.1 116 ARRFF-QQLISGIEYSHHLKIVHRDLKPENVLLDDDLNVKIADFGlsNEIKDGDFLKTSCGSPNYAAPEVIRG-GLYTG-------PEIDVWSCGVIL 204
                  55555.6889999999**************************997225567777777777779*******966.44655.......78********** PP

  Kinase-like 241 yriwclklPltlateeakeew....kfklckkipekvkaLlkkfLq 282
                  y + c  lP++ +  +          ++l    +   k L++++L 
   CDO73392.1 205 YVMLCGRLPFEDDDVQTLFTKisqgVYHLPSYLSADAKNLINGMLA 250
                  **********876543322211222455555555555666666665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   4.4e-07    0.0008      45     152 ..      52     161 ..      28     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.4e-07
                 S-HHHHHHHHHHHHHHHHHHHHHTT.--S--EEEEETTE.EEEE--EETTEEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEE CS
        RIO1  45 tnprklvklwaekEfrnLkrleeag.vpvPkpielkrhv.lvmefigedgvaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvd 140
                    ++ +k+ +++E+++++ l++ + ++  ++i    ++ +v+e+ g + ++ + + + ++ e +a++ ++++++ ++    + ++vH DL   Nvl+d
  CDO73392.1  52 AIAKHRTKTRVQREVEYMRTLRHPHiIKLYEVISTPTDIiIVLEYAGGELFN-YIVANGRMsEPQARRFFQQLISGIEYSH-HLKIVHRDLKPENVLLD 148
                 445666788999*********9887699*****9987752689999933333.334444444999**********766555.99*************** PP

                 TT.EEEE--GTTE CS
        RIO1 141 ed.kvviIDvsQa 152
                 +d +v i D++ +
  CDO73392.1 149 DDlNVKIADFGLS 161
                 *****9*999755 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.2e-06    0.0021     183     254 ..      87     161 ..      44     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
  Haspin_kinase 183 qlflvlllkdkGtdLeev....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                       ++++l+++G +L +        s  qa + f q ++ +  +  +++  HRdL+ +n+L+d+ lnv + d+ ls
     CDO73392.1  87 PTDIIIVLEYAGGELFNYivanGRMSEPQARRFFQQLISGIEYS-HHLKIVHRDLKPENVLLDDDLNVKIADFGLS 161
                    55688999999999988844433345568888888888777665.68999***********************987 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.12   2.1e+02      18      99 ..      37     124 ..      32     133 .. 0.73
   2 ?   10.9   0.6   0.00018      0.33     166     194 ..     133     159 ..     113     162 .. 0.72
   3 ?   -1.8   0.0       1.3   2.3e+03      58     101 ..     318     365 ..     297     414 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.12
                 ETT.--EEEEEE-TT.....S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHHH CS
         APH  18 tpa.gryvlrrnppa.....raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpellealg 99 
                 t + +++++++++++     r++ +++rev+++r L+   + +  ev+   t  + i     ++ey +g+ +       ++s++q+++++++l+
  CDO73392.1  37 TVTgQKVAMKFISKQaiakhRTKTRVQREVEYMRTLRHPHIiKLYEVIS--TPTDIII----VLEYAGGELFNYivangRMSEPQARRFFQQLI 124
                 444346666665555555568999999**********666668889998..5666655....88888887777777778888888888888776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00018
                 EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfe 194
                   ++H+Dl+p N+l+d+d +    + Df+
  CDO73392.1 133 LKIVHRDLKPENVLLDDDLNVK--IADFG 159
                 569*************554444..66665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.3
                 CTTBS-EEETTEEEEEEE----EE-SS....HHHHHHHHHHHHHHHHH CS
         APH  58 lagdtddeeigllfalieyvpgrsllr....klsaaqlpellealgef 101
                 la ++ + +++ +++ + + +g +       ++  +++++++++l+ef
  CDO73392.1 318 LASRMEGVDKEDVWESLRRDDGPQGNAvkvaYMLLRDKRRAGRNLAEF 365
                 444444444555555555555555555555555555555555555555 PP

>> YukC  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.7e-05      0.17      64     108 ..     120     166 ..      55     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.7e-05
                 HHH.GGGGG.GGGGSSEE---SGGGEEE-TTS-EEES--EETTTBS- CS
        YukC  64 aln.ikale.ellssrltlilhPeNlvfdknlepkilhrgvkeslpp 108
                  ++ i+ +e  ++ + ++  l+PeN+++d++l++ki+  g+ + +++
  CDO73392.1 120 FQQlISGIEySHHLKIVHRDLKPENVLLDDDLNVKIADFGLSNEIKD 166
                 4444666652455567899**********************998876 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.9   0.00043      0.77       7      84 ..     358     457 ..     353     525 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00043
                 xxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx RF
         YL1   7 AGnrlkkLleqeee....................edelellFaEeedDeefeseeeeeeeensDsdfdsdeedee.......sdeeedeeegekelerq 78 
                 AG++l++  eqe +                    +       +E   Deef++ +++e++   D df+  +++ e       +++  +++ +   l+  
  CDO73392.1 358 AGRNLAEFEEQERDaklavmdprhplspnavspgGT----DLEENPFDEEFNDYDDDEDD---DFDFSTPQNEGEsnnfavlNSSLPEQLPEPHHLQSY 449
                 777777777777656666666666665555555522....33556667777766555553...444433222222224555545555555555566666 PP

                 xxxxx..x RF
         YL1  79 erkkr..k 84 
                 + +kr   
  CDO73392.1 450 ANAKRipV 457
                 66666432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:01.77
# Mc/sec: 1095.95
//
Query:       CDO73393.1  [L=352]
Description: hypothetical protein BN946_scf185013.g27 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.7  42.8      5e-15   55.3  18.7    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.3    8.8   3.8        8.1    6.2   0.0    2.9  3  COX7B     Cytochrome C oxidase chain VIIB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0  20.9   8.4e-13   7.5e-09      57     238 ..       3     169 ..       1     174 [. 0.74
   2 !   55.3  18.7   5.6e-19     5e-15       3     179 ..     150     345 ..     145     348 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 8.4e-13
       MFS_1  57 drfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav 153
                  rf   + + l+g++++++g++ ++f+++lw l l   +l G+g+++++  +++l+ ++f + +rg a+g++ ag+++G ++  ++  +l++ +g +++
  CDO73393.1   3 RRFDNVKlISLAGAFIMSVGIFTASFCTQLWqLYLTQGLLYGIGSSMYYFPIMSLTPAYFDR-NRGAAMGIVLAGSGIGGLVLSPVFHILLTRIGIQWA 100
                 57777777999*********5555599****99****************************9.*****************999888889999******* PP

       MFS_1 154 fyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevl 238
                   il++  + +++ +  +l+ ++ + +  ++ ++         v+   ++++      +++ +l++   ++++  ++p+y+ +++
  CDO73393.1 101 LRILGLWNFALGIPISSVLTKKHGAAASATGGTR---------VS-MAMMKRGT----FILQSLGA--LLQAAGNMVPVYFLTTY 169
                 ************9444444444444444444444.........23.33333444....33333333..45555555555544444 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 5.6e-19
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 l+a+l a++ ++   +l+ +  + l +s s+ +lll++ +++ ++a + +G+l+dr+Gr  +++l+++++++++++l++  s    +l++ v+ G+ ag
  CDO73393.1 150 LGALLQAAGNMVPVYFLTTYSVSVLSYSSSTGSLLLAVNTAVNSAARIGMGVLADRVGRQNTMVLSVIFSGVAVFALWY-DSDRaRFLAFIVFYGILAG 247
                 67777788888877777777788899***********************************************666667.667766************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...................Wravfyilaivsllafvlfllllpeepper 179
                 +++++  + ia+++  ++ ++++++++   +lGa++g++++gl++ s                     +  v ++ ++++l a+v+++ + + +++++
  CDO73393.1 248 GYNALLPTTIAEVYGVQNYSSVNAFIYFIRGLGALFGAPIAGLILGSHQrgtrlsgglvnnlnllktrYNDVAIFDGVLLLAAGVCVAYVRWLDARDK 345
                 ******************************************999666689***************999999*************9999999888765 PP

>> COX7B  Cytochrome C oxidase chain VIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.013   1.1e+02      45      59 ..      25      39 ..      13      60 .. 0.77
   2 ?    6.2   0.0   0.00091       8.1      45      66 ..      80     101 ..      70     106 .. 0.80
   3 ?   -2.5   0.1      0.46   4.1e+03      38      56 ..     324     342 ..     317     351 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.013
       COX7B 45 Gavfcvavwvyvltq 59
                 a fc+  w  +ltq
  CDO73393.1 25 TASFCTQLWQLYLTQ 39
                478***********9 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00091
       COX7B  45 GavfcvavwvyvltqigieWnl 66 
                 G ++   v+ ++lt+igi+W l
  CDO73393.1  80 GGLVLSPVFHILLTRIGIQWAL 101
                 4556778999**********98 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.46
       COX7B  38 GnavlisGavfcvavwvyv 56 
                 G  +l++G  +  + w   
  CDO73393.1 324 GVLLLAAGVCVAYVRWLDA 342
                 6678899988888888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2487.75
//
Query:       CDO73394.1  [L=738]
Description: hypothetical protein BN946_scf185013.g28 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5135.87
//
Query:       CDO73395.1  [L=240]
Description: hypothetical protein BN946_scf185013.g29 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.8   3.5      0.012   15.8   3.5    2.3  2  Cnn_1N    Centrosomin N-terminal motif 1
        2.5    6.6   5.8       0.37    9.3   2.2    1.4  2  FapA      Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   3.5   1.3e-06     0.012      18      68 ..      48      99 ..      35     103 .. 0.92
   2 ?    0.6   0.2     0.074   6.6e+02      22      42 ..     199     222 ..     195     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-06
      Cnn_1N 18 dLKLriyfLeerleklse.eqkeellkenielkveveslqkelkekkkllre 68
                 L+++i+ L+ +l ++++ e++++l+ke ++l++ ++  q+e++++  +l++
  CDO73395.1 48 KLQIQIQSLQAQLAQRPPlETVQALEKEYTNLEILLQGTQRENERCMAELER 99
                59999*****************************************988875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.074
      Cnn_1N  22 riyfLeerleklse...eqkeell 42 
                  i  +e+rl+ +++   +++e ++
  CDO73395.1 199 LIIGMEQRLQTREDklvKHIERAE 222
                 566788888888885554444443 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.2   4.2e-05      0.37     336     414 ..      28     103 ..      16     122 .. 0.83
   2 ?   -3.3   0.1      0.28   2.5e+03     329     350 ..     202     222 ..     184     235 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 4.2e-05
        FapA 336 kekl.keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkee 414
                 +e++ + l+++l e  +e++kl+ +i++l++  a    +   +e+++ l++++ +l+  l+  ++e ++  +ele++k+ 
  CDO73395.1  28 DESVeDVLRRQLLEKDRECDKLQIQIQSLQAQLA----QRPPLETVQALEKEYTNLEILLQGTQRENERCMAELERGKAR 103
                 555557899999999**************99433....34579********************************99433 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.28
        FapA 329 gldepelkeklkeleeeleele 350
                 g++ + l+ + ++l + +e+ e
  CDO73395.1 202 GME-QRLQTREDKLVKHIERAE 222
                 333.333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1922.00
//
Query:       CDO73396.1  [L=235]
Description: hypothetical protein BN946_scf185013.g30 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 1463.96
//
Query:       CDO73397.1  [L=1054]
Description: hypothetical protein BN946_scf185013.g31 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-122  408.6   1.4   2.3e-122  408.2   1.4    1.1  1  DUF726    Protein of unknown function (DUF726)
  ------ inclusion threshold ------
      0.034   13.8   0.5      0.062   13.0   0.5    1.3  1  DUF3541   Domain of unknown function (DUF3541)
       0.21   11.8   2.0        4.8    7.5   0.8    2.4  2  DUF2951   Protein of unknown function (DUF2951)


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.2   1.4  3.8e-126  2.3e-122       2     342 ..     379     716 ..     378     717 .. 0.99

  Alignments for each domain:
  == domain 1  score: 408.2 bits;  conditional E-value: 3.8e-126
      DUF726   2 kikrylliglAglaGgaligltggLaaPlvaagigallaglGltgsaafLasvggsavitallgaagAklsvkkmkkrvkeikdFefiplseqirlksl 100
                 k +ry+++glA+l+Gg++igl++gL+aP+++ag+ga+l+++G+tg+++fLa++gg+avit+    +g ++++++m++r++++++F + pl++++r+ + 
  CDO73397.1 379 KKRRYMMMGLATLGGGLVIGLSAGLLAPVIGAGLGAALTTVGITGTTGFLAGTGGAAVITTGGVLTGSGIAARGMARRTQHVRTFDILPLHNHKRV-NC 476
                 789*******************************************************************************************98.** PP

      DUF726 101 tvtvsislelsdeddvtapwralakaekdlYalkwEvelLkelGkaletilasealsvakqeilkrtvlaslvaaltWPlaLlkvakildnpwnvsler 199
                 ++tvs+ + ++ +ddv+ p++ l+++++d++++ wE+e++ e G+al +il++e+ls+ +q +l++tv+++l++al+WP++L+k+++++dnpw+++l+r
  CDO73397.1 477 ILTVSGFM-TGPHDDVRLPFSVLDPVVGDVFSVLWEPEMIRETGSAL-KILTTEVLSQLAQTALQATVMTALMSALQWPIILTKLGYLIDNPWSNALDR 573
                 ********.**************************************.*************************************************** PP

      DUF726 200 aakaGklLAdallsraqGeRpvtLiGfslGARviyvCLlelakkkalglvenvillGaPvtteakvwlkvrsvvsgRlvnvysenDylLgflyRtssaq 298
                 a +aG +LA++ll+r+ G Rp+tLiGfslGARvi++ L elakk a+g+v++v+llGa vt+   +wl+vrsvvsgR+vn+y++nD++L++l+R++s +
  CDO73397.1 574 ARAAGGVLAEVLLNRHLGVRPITLIGFSLGARVIFYALVELAKKGAFGIVQDVFLLGATVTAPLSTWLEVRSVVSGRFVNGYARNDWVLNYLFRATSGG 672
                 *************************************************************************************************** PP

      DUF726 299 f.rvaglqrieldvekvenvdvselvegHldYrkklkkilkaigl 342
                 + +vagl+++++ v+++envdv++++ gH++Yr+ ++ il ++g+
  CDO73397.1 673 LnTVAGLRPVQN-VPGLENVDVTDKIAGHMSYRTFMPLILDQLGF 716
                 *99********5.***************************99876 PP

>> DUF3541  Domain of unknown function (DUF3541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5     1e-05     0.062     104     170 ..     125     191 ..      82     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
     DUF3541 104 lylgvdLlgslaradeyGlkhkedkklrevlrrvdfkkyatdkemieawaaqlanqvYwlrqlgeqd 170
                 +  ++d+l+++ r+ + Gl   + k++++ l++v+ ++  +  + +e wa +++   Y+  +l  ++
  CDO73397.1 125 MQQTKDMLTEAQRIAYVGLCALTSKEMIDSLKAVNRRELKKAIQNMELWALKIMGRLYYHMELATEE 191
                 55689*******************************************************9997654 PP

>> DUF2951  Protein of unknown function (DUF2951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.8    0.0008       4.8       8      87 ..     104     185 ..      98     195 .. 0.74
   2 ?    2.9   0.0     0.021   1.3e+02      27      94 ..     343     406 ..     323     410 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0008
     DUF2951   8 eqewrlrrleendktm..lekldeikdslktqekvyikldktleelrkekeideknkkkndknirdikmwvlglvgtilssl 87 
                 e + r r l ++dk+m  l+++++ kd l   +++      +l + +        n+++ +k i+++ +w l ++g ++  +
  CDO73397.1 104 EVHLRTRYLFDEDKAMtpLSQMQQTKDMLTEAQRIAYVGLCALTSKEMIDSLKAVNRRELKKAIQNMELWALKIMGRLYYHM 185
                 5567888898999988667899999998877777654433444444444455567999******************987655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
     DUF2951  27 ldeikdslktqekvyikldktleelrkekeideknkkkndknirdikmwvlglvgtilsslviallkt 94 
                 ld +k  ++  e ++i  +  +e+l+++  i+e   +kn+k+ r + m +  l g ++  l   ll  
  CDO73397.1 343 LDVVKFERRVTEALEI--QEGIEKLEQQESIQEA--QKNSKKRRYMMMGLATLGGGLVIGLSAGLLAP 406
                 5555555555555543..4667777777777665..56888889998888877777766666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 6914.50
//
Query:       CDO73398.1  [L=162]
Description: hypothetical protein BN946_scf185013.g32 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-24   86.3   0.0    1.4e-24   86.3   0.0    2.0  2  SRP14       Signal recognition particle 14kD protein
  ------ inclusion threshold ------
        0.2   10.9   1.1       0.29   10.4   1.1    1.3  1  Polyhedrin  Polyhedrin


Domain annotation for each model (and alignments):
>> SRP14  Signal recognition particle 14kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   1.6e-28   1.4e-24       1      96 []       4      92 ..       4      92 .. 0.88
   2 ?   -1.7   1.8      0.44   3.9e+03      64      69 ..     131     136 ..      94     161 .. 0.50

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.6e-28
       SRP14  1 lsndeFlteLtelfeksrekgkgsVyltqKrlteakkaeskeeeesseekeykcLiRatdgkkkkkvkisTvVeakdlekFqarYaevlkagmdgL 96
                ++n++F+++L+ lfe+s+++g  s++lt+Kr+t   +  + + +++ + key+cLiR+tdgk+    k+sTvV++ +le+F+a Y  +lka+m++L
  CDO73398.1  4 VDNETFFKQLSGLFETSTKSG--SIWLTHKRFTY--EGGDVHMSAEDDIKEYPCLIRVTDGKEA---KFSTVVQPAELEEFHATYGALLKASMTSL 92
                689*************88888..********885..23333445667779**************...**************************998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.44
       SRP14  64 kkkvki 69 
                 k++ ki
  CDO73398.1 131 KRQRKI 136
                 222222 PP

>> Polyhedrin  Polyhedrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   3.3e-05      0.29      17      58 ..      92     133 ..      78     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHTTS-----TTTSSSEEEEE CS
  Polyhedrin  17 indakrkkdrieeeeeeeeldaldqylvaedpflGpGknvkl 58 
                 +++  +k+++++ ee +++++ l+q +v + p +G G++++ 
  CDO73398.1  92 LRKRDKKREKQRAEEAARKKRRLQQEIVIDGPKRGNGRRKRQ 133
                 455567888999999999*******************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2010  (0.112109); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 1064.54
//
Query:       CDO73399.1  [L=623]
Description: hypothetical protein BN946_scf185013.g33 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-42  143.9   0.9    6.4e-42  143.9   0.9    1.8  2  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
    2.2e-12   47.3   0.1    2.8e-11   43.8   0.1    2.3  1  NAD_binding_7   Putative NAD(P)-binding
    7.9e-10   38.2   0.2    8.7e-07   28.5   0.0    2.5  2  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
    5.8e-07   28.9   1.8    5.8e-07   28.8   0.0    2.0  2  Sirohm_synth_M  Sirohaem biosynthesis protein central


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.52   2.3e+03      66      88 ..      32      55 ..      19      64 .. 0.80
   2 !  143.9   0.9   1.4e-45   6.4e-42       1     212 [.     335     555 ..     335     556 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.52
  TP_methylase 66 eeiaeal.aealragkdVvllvsG 88
                  +++a++  ++al+a+ +V++lv G
    CDO73399.1 32 NNVAAMRaFAALEADATVLVLVRG 55
                  667777788999999999999866 PP

  == domain 2  score: 143.9 bits;  conditional E-value: 1.4e-45
  TP_methylase   1 klylVGvGpGdpellTvrAlralk.tadvvlgddsraleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygt 95 
                   +++lVG GpG+p llTv++++al   a +vl d+ ++++ +l+l+++ + +  a++++   ++e+a+ e  ea +ea+++g +Vv+l++GDP+vyg+
    CDO73399.1 335 RIFLVGSGPGHPSLLTVATHAALTkHANLVLSDK-LVPDAVLALIPPGVeVRIARKFPG--NAEGAQTELMEAAVEAAKRGLTVVRLKQGDPTVYGR 428
                   589********************97999999888.************987777777777..99********************************** PP

  TP_methylase  96 gselvealrareagieveviPGvsslqaaaarlgiplteggevlsvl.lpglakeeereleallangdtlvllkaprklaelaelL..........k 181
                   ++e+v  +ra  +g+e  v+PGvss+ a ++++gip+t++g + s++  +g ++++++      ++g+tlv+l+++ +l +++e+L          +
    CDO73399.1 429 AGEEVIYFRA--HGFEPVVVPGVSSALAGPTFAGIPVTQRGAAESFIvCTGVGRQGKEVKLPGYERGRTLVILMGVARLLQVLEALqsadlsssrrR 523
                   *****9****..*********************************9996666666666666777889**************************9754 PP

  TP_methylase 182 ea.lyddttpvavveragtedervvrgtleel 212
                   +   y+  tp+a++era+++d+rv+ +tl+ +
    CDO73399.1 524 DGpAYPSHTPIAIIERASMPDQRVISSTLKNI 555
                   449899999********************976 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   6.2e-15   2.8e-11       5     102 ..      21     159 ..      17     161 .. 0.60

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 6.2e-15
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev.keeleelvklaeee......................lekd................... 58 
                      +k++l++Gg++vAa ++   lea+a+v v+      +++ee ++++ ++                         d                   
     CDO73399.1  21 PVKKNILIIGGNNVAAMRAFAALEADATVLVLVRGGlDAACEE-LRWRAQQgqlqlfdldalpcssagpsdvvR--Dakavdtfiytrsapvhlvc 113
                    5689*************************99776653555554.444333334555555555555554444430..13333333333322333222 PP

  NAD_binding_7  59 .legadlviaatddrelner.iaeaakarrilvnvadkpelcdfif 102
                      + ++   +   ++ l+++ ia++++ rri+vnv+d p+lcdf f
     CDO73399.1 114 iTDTIASPGTGYRRTRLSAQdIAQLCRHRRIPVNVTDMPDLCDFSF 159
                    111111112222334454445***********************98 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1   0.00086       3.9       1      22 [.     202     223 ..     202     233 .. 0.81
   2 !   28.5   0.0   1.9e-10   8.7e-07      25      60 ..     256     292 ..     246     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00086
  Sirohm_synth_C   1 PdnlgaAiekvgkLRkkLReia 22 
                     P+n+g A+ kvg LR+  + + 
      CDO73399.1 202 PRNVGVAVAKVGRLRELAKSVD 223
                     89*************8766655 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.9e-10
  Sirohm_synth_C  25 q.eegpkRMkWmskvcdswsleelaeldeedmekLle 60 
                     + e+ ++RMkW+ ++++ w +++la+l+ee+m++ l+
      CDO73399.1 256 PvERARRRMKWVAQLSEYWPIRKLARLTEEEMNAVLD 292
                     2477788**************************9985 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.3e-10   5.8e-07       3      25 ..     175     197 ..     174     200 .. 0.93
   2 ?   -3.8   0.9         2     9e+03       9      18 ..     303     313 ..     303     314 .. 0.54

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.3e-10
  Sirohm_synth_M   3 pLQIaiSTnGksPrLAaliRrei 25 
                     pLQI ++TnG ++rLA +iRr  
      CDO73399.1 175 PLQIGVTTNGHGCRLAGRIRRDM 197
                     9*******************976 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2
  Sirohm_synth_M   9 STnGk.sPrLA 18 
                     S+ G+ sP+L+
      CDO73399.1 303 SSSGAsSPALS 313
                     55565157766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 4149.85
//
Query:       CDO73400.1  [L=193]
Description: hypothetical protein BN946_scf185013.g34 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.46   10.2   0.0    1.9  2  GntR      Bacterial regulatory proteins, gntR family


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   2.6e-05      0.46      41      62 ..     118     139 ..     115     141 .. 0.90
   2 ?   -1.4   0.0      0.11   1.9e+03       8      25 ..     150     167 ..     148     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHTTSEEEETTCEE CS
        GntR  41 vReALrrLeaeglverrqgrGt 62 
                 v eAL+ L+++g++ +r ++G 
  CDO73400.1 118 VEEALSDLVQKGVLYVRARGGL 139
                 89*****************997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.11
                 HHHHHHHTTSS-TTSB-- CS
        GntR   8 rLredIlsgelrpGdkLP 25 
                 r  ++I++ el++G  LP
  CDO73400.1 150 RFSAEIVARELNAGYGLP 167
                 556789999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1458.27
//
Query:       CDO73401.1  [L=290]
Description: hypothetical protein BN946_scf185013.g35 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-19   69.5   0.0    7.8e-18   65.1   0.0    2.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.1e-17   64.0   0.0    2.7e-17   62.7   0.0    1.5  2  Say1_Mug180    Steryl acetyl hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   8.6e-22   7.8e-18       2     203 ..      58     249 ..      57     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 8.6e-22
                    EEE--STTTS--TTTT....HHHHHHHHHH.HTSEEEEEE---TTTS-......TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldth....dalcrelake.lgavvvsvdYrlAPehp......fPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaa 86 
                    +y+HGGG+vlgs++       ++ r l+++ +   v++v+Y l           fP ++ +al+a+r+l++    +++ ++r+++ GdSaG++l++
     CDO73401.1  58 LYLHGGGYVLGSAKDVrsgfARIPRGLVDHrICSSVLAVEYTLISSEDgsrgrfFPLQILEALSAYRHLFTA---KNIPANRVIFIGDSAGAHLVL 150
                    8************8886667777788886515567*******9765433444459****************8...69******************* PP

                    HHHHHHHHTT.---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHH CS
  Abhydrolase_3  87 avalrardeg.epkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrd 181
                    a+ + + ++g  p+++g++l++P+ dl ++e ++         + ll +   +           + +p++sp l++  s  pptlv+ + ++ + +
     CDO73401.1 151 ALQRYLSESGgIPSPKGLILLSPWCDL-TKEADRV--------QNLLGNLPAE----------FIVSPYLSPALHPPPSPWPPTLVYSGAQESFAQ 227
                    ********994566***********88.4423333........2344322333..........334677777777656678*************** PP

                    HHHHHHHHHHHTT--EEEEEET CS
  Abhydrolase_3 182 egeayaerlraagvevelieye 203
                      +a+  +l++a  +v++++ +
     CDO73401.1 228 SIAALVSQLHKASMNVTFHQAQ 249
                    ******************9876 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0     3e-21   2.7e-17     126     240 ..      58     180 ..      49     190 .. 0.85
   2 ?   -2.3   0.0      0.17   1.5e+03     306     338 ..     216     249 ..     215     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3e-21
  Say1_Mug180 126 lylHGGgfalklipvtlvfLsnlrklfpdm....ailvsDYtvtaakdqs..kkYplqvleslavydylvkskg..fknvvvlGdSaGGnlvLslllk 215
                  lylHGGg++l+  + + ++   + + + d     ++l ++Yt+++++d s    +plq+le+l  y  l  +k    + v+ +GdSaG  lvL l  +
   CDO73401.1  58 LYLHGGGYVLGSAKDVRSGFARIPRGLVDHricsSVLAVEYTLISSEDGSrgRFFPLQILEALSAYRHLFTAKNipANRVIFIGDSAGAHLVLALQRY 155
                  9*******************999887764435999**********9986511679************997655411689******************* PP

  Say1_Mug180 216 lsklnkvvlPkkaiaiSPWlnltil 240
                  ls+ +    Pk+ i++SPW++lt  
   CDO73401.1 156 LSESGGIPSPKGLILLSPWCDLTKE 180
                  **********************932 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.17
  Say1_Mug180 306 lityGddEilkdqikllidkiselkek.sysepk 338
                  l+  G +E + + i  l++++ +++ + ++++++
   CDO73401.1 216 LVYSGAQESFAQSIAALVSQLHKASMNvTFHQAQ 249
                  5667889999999999999999888775555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2344.84
//
Query:       CDO73402.1  [L=1586]
Description: hypothetical protein BN946_scf185013.g36 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-61  206.6   1.4    1.6e-60  204.3   1.4    2.3  1  SMC_N            RecF/RecN/SMC N terminal domain
      2e-24   86.1   0.0    9.4e-24   84.0   0.0    2.3  1  SMC_hinge        SMC proteins Flexible Hinge Domain
    6.2e-10   39.3   0.0    6.2e-10   39.3   0.0    3.5  3  AAA_15           AAA ATPase domain
    6.6e-10   39.3   0.0    5.2e-06   26.5   0.0    3.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.1e-06   29.3  31.4    1.1e-06   29.3  31.4    7.9  5  AAA_23           AAA domain
    8.1e-06   25.5   0.0    1.6e-05   24.5   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
     0.0065   15.9   2.0     0.0065   15.9   2.0    6.6  7  DUF4349          Domain of unknown function (DUF4349)
  ------ inclusion threshold ------
       0.16   12.9   4.9       0.63   10.9   1.2    3.8  2  zf-PARP          Poly(ADP-ribose) polymerase and DNA-Ligase Z
       0.34   11.4   0.0       0.34   11.4   0.0    5.7  5  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   1.4   7.9e-64   1.6e-60       2     218 ..     346    1565 ..     345    1567 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 7.9e-64
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEE......EETTEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitf......dnedkklki 92  
                  ++++ + nFksyag++ i+pf+ksf+aivGpNGSGKsn +dA+lFv+G r++ k+r+ kls+lih+s++ + +++++ve++f        +++ +++
  CDO73402.1  346 IHKMALVNFKSYAGRQEIGPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRAS-KMRQGKLSELIHNSAAYPDLTECSVEVHFreiidlPGPNAFEVV 441 
                  88999*******************************************9888.*****************************555533334444899 PP

                  SSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT...................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................... RF
       SMC_N   93 ekeevsisrrvkrkgeseykingkevtkkevsellesagiske...................................................... 135 
                    ++++++r+++++++s+y ing+  t++ev+ ll+  gi+ +                                                      
  CDO73402.1  442 PGSKLVVTRTAYKNNSSKYSINGRASTYSEVQTLLKGRGIDLDhnrflilqgevesiaqmkpkaanendeglleylediigtsqykepiekaleeve 538 
                  9************************************************************************************************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1  539 rlsedrqkklnrlrivdkdrkaleakkkeaedylrmvndlvrarsrlwqwyiwkclvneaqldekiakvegdlqeerernqddithldmlqkhydek 635 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1  636 ceafeevkkaaaaavkdlatrektqisleekrkhantkvkklkkaisddeharaeadrtveeseakierkkeelenleqelaqaekaleeirdslkd 732 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1  733 ktqvfhdqievkqkelqpwaakidakqaevdvatserdalkkkaeaaqearekaeaeleqlrddhrakqaeleqlgaekarnqreirqaekelqaaq 829 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1  830 sqieglrakasasrqkveeakssheqsrsnnrvldslnrlktsgriqgfhgrlgslgtipekydvavstacgqlnhmvvdtveqgqacieylrnqnv 926 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1  927 grasfmvleklngggmdkiptpenvprlfdlikpkeprfapafykaltntlvadnleqanriafggrtrwrvvtlagqlidasgtmsgggtnvqrgg 1023
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1 1024 mssklaadvvppevirqyqqdsekdaraleeavhqmreleaqldalkqsaprlelaydkvnldirnaakriadtegrvrelksqskpdakdvsriaa 1120
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1 1121 ldreidsatveleklqqrttsieteikalekkileiggarllsqkskvdglrlhinlandeitkaevakakaekdrvkyqsavenniaelkevqgel 1217
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1 1218 aeleeqleecggymsqlrqqvdvaqaaaekasddlnklkeeldekteqiqafrqtemklqqelgdlkkafdenkrslehwsiehdklhledvdeege 1314
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CDO73402.1 1315 eaeeqvvqdggddegdgegervddgeapvkkepvakkprartpsselhvyteqelatfkkrelvadvelldekvknakpdlgvlkdyrqreeeflrr 1411
                  ************************************************************************************************* PP

                  ...................................................................................CS-HHHHHHHHHHH CS
                  ...................................................................................xxxxxxxxxxxxxx RF
       SMC_N  136 ...................................................................................lLSgGektLvalaL 149 
                                                                                                     +LSgGek+      
  CDO73402.1 1412 aadldevtklrdekkeeydtlrkrrldefmagfsaislklkemyqmitlggnaelelvdsmdpfsegiifsvmppkkswknisNLSGGEKA------ 1502
                  *****************************************************************************************96...... PP

                  HHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  150 lfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkvengv 218 
                          p+ply++DeidaaLD++nv++va+++k ++knaQfi+islr++m+e +++l+g++k+ n++
  CDO73402.1 1503 ------RTPTPLYFMDEIDAALDFRNVSIVANYIKDRTKNAQFIIISLRNDMFELSHRLIGIYKTANAT 1565
                  ......78********************************************************88876 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   4.7e-27   9.4e-24       2     117 .]     876     989 ..     875     989 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 4.7e-27
   SMC_hinge   2 kgvlGrladlievdegyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevdde.lrkalry 99 
                 +g++Grl++l +++e+y++Av++a+g+ l++ vv++ e+ +++ie+l+ +n gra+f++l++++    ++ ++++  ++ +l+dl++ ++  +++a+++
  CDO73402.1 876 QGFHGRLGSLGTIPEKYDVAVSTACGQ-LNHMVVDTVEQGQACIEYLRNQNVGRASFMVLEKLNGGGMDKIPTPE--NVPRLFDLIKPKEPrFAPAFYK 971
                 799**********************97.********************************************999..6********************* PP

   SMC_hinge 100 llgdtlvvdsldeAeela 117
                 +l +tlv+d+l++A+++a
  CDO73402.1 972 ALTNTLVADNLEQANRIA 989
                 ***************986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   3.1e-13   6.2e-10       3     261 ..     346     633 ..     345     652 .. 0.74
   2 ?  -10.7  25.1         9   1.8e+04     102     269 ..     657     847 ..     638     876 .. 0.46
   3 ?    0.8   9.6      0.16   3.2e+02     108     261 ..    1143    1288 ..    1075    1345 .. 0.65

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.1e-13
      AAA_15   3 IkkikikNFRslkd.vei.dlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef..........aek... 86 
                 I+k+ + NF+s+    ei ++ ++++ ++G+N+sGKS+ ++al + +   ++ +k+   + +e ++++  +    +  ++v+f          a++   
  CDO73402.1 346 IHKMALVNFKSYAGrQEIgPFHKSFSAIVGPNGSGKSNTIDALLFVFG--YRASKMRQGKLSELIHNSAAYPDLTECSVEVHFreiidlpgpnAFEvvp 442
                 7889999*****987666589999*******************99999..77888889999999****999***************9999999444556 PP

      AAA_15  87 .ekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkel..pkekeeklekekeelkid..kedlkklikkleesl 180
                  +k  +   + k++ +k++ +    ++s+ ++++k + ++l++n++     +ve + ++k    +++ e  le  ++ + +   ke ++k +++ e   
  CDO73402.1 443 gSKLVVTRTAYKNNSSKYSINGRASTYSEVQTLLKGRGIDLDHNRFLILQGEVESIAQMKPKaaNENDEGLLEYLEDIIGTSqyKEPIEKALEEVE--- 538
                 45555555666677778888888999********************99999998888855440044444455555555555455666666666333... PP

      AAA_15 181 kkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl....................eeelteklkeiqeklkeidkklaee 259
                     +l++  ++++  l++  ++R++ + ++++ +++l +  +++++  ++ ++                    e +l+e+ ++ q++++++d   +++
  CDO73402.1 539 ----RLSEDRQKKLNRLRIVDKDRKALEAKKKEAEDYL-RMVNDLVRARSRLWQwyiwkclvneaqldekiakvEGDLQEERERNQDDITHLDML-QKH 631
                 ....4556678****************99999866666.66677778777777799999999966666666666666666666666666655543.233 PP

      AAA_15 260 lk 261
                 + 
  CDO73402.1 632 YD 633
                 33 PP

  == domain 2  score: -10.7 bits;  conditional E-value: 9
      AAA_15 102 kkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkid..kedlkklikkleeslkkee........elknvl 190
                 +k+++ l++k++   + +k+ k +++ +e      +   ++s+ +++ +kee +++e+e  + +   e++++ +k+ ++ +  +          +  ++
  CDO73402.1 657 EKTQISLEEKRKHANTKVKKLKKAISDDEHARAEADRTVEESEAKIERKKEELENLEQELAQAEkaLEEIRDSLKDKTQVFHDQIevkqkelqPWAAKI 755
                 444445555555444444444444443333333333333333333333333333333333333322444444444333333333333334444444455 PP

      AAA_15 191 ksaiiklllisakRnvsdedsekkssllgklkekileealqekl...................eeelteklkeiqeklkeidkklaeelk..kilkkki 268
                  +++ ++++  ++R++ +++ e  +++ +k+  ++                            + ++++++ + +++l+ ++++++   +  +   +k+
  CDO73402.1 756 DAKQAEVDVATSERDALKKKAEAAQEAREKAEAEL--------EqlrddhrakqaeleqlgaeKARNQREIRQAEKELQAAQSQIEGLRAkaSASRQKV 846
                 55555555555555555544444444443333333........03333334566676666666555555555555555555555544433442233333 PP

      AAA_15 269 d 269
                 +
  CDO73402.1 847 E 847
                 3 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.16
      AAA_15  108 lkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkeeelknvlksaiiklllisakR 204 
                   ++++   kk+++     l +++ +++   ++ + ++ e+ k +  k++ ek+ +k+++   +++ + l+e   + +el++ l++   ++     + 
  CDO73402.1 1143 ETEIKALEKKILEIGGARLLSQKSKVDGLRLHINLANDEITKAEVAKAKAEKDRVKYQSAVENNIAE-LKEVQGELAELEEQLEECGGYMSQLRQQV 1238
                  2333333456777777777888888888888888888888888888888888888877777777777.33333333377777777777777777777 PP

      AAA_15  205 nvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk 261 
                  +v +   ek s+ l+klke++ e+        e+++++ +++ kl++  ++l++   
  CDO73402.1 1239 DVAQAAAEKASDDLNKLKEELDEK-------TEQIQAFRQTEMKLQQELGDLKKAFD 1288
                  788888888888888888888773.......44555555555555544444433333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.6e-09   5.2e-06       1      26 [.     370     410 ..     370     477 .. 0.77
   2 !    9.0   0.0   0.00057       1.1     256     296 ..    1504    1543 ..    1494    1543 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.6e-09
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarl...............d 26 
                 + +++GpNgsGKSn +dal +++++               +
  CDO73402.1 370 FSAIVGPNGSGKSNTIDALLFVFGYraskmrqgklselihN 410
                 679*******************9987655555554444443 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00057
      AAA_21  256 kkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                   +++l++ DE+++ L+ + ++ ++  +k+ ++ +aQ+i+ +
  CDO73402.1 1504 TPTPLYFMDEIDAALDFRNVSIVANYIKDRTK-NAQFIIIS 1543
                  4459***********************99999.9***9976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3  31.4   5.7e-10   1.1e-06       3     200 .]     350     724 ..     348     735 .. 0.77
   2 ?  -10.3  24.8         9   1.8e+04     122     200 .]     727     833 ..     720     840 .. 0.44
   3 ?  -11.6  25.5         9   1.8e+04      90     200 .]    1094    1225 ..    1034    1227 .. 0.46
   4 ?  -13.6  27.0         9   1.8e+04     124     200 .]    1186    1267 ..    1164    1322 .. 0.44
   5 ?   -2.3   7.2       2.6   5.2e+03      97     174 ..    1364    1434 ..    1298    1459 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 5.7e-10
      AAA_23   3 kienfrsf.rdqei.dFskgltlItGpNGaGKTTildAiklaLygetprlsrks..........grgfeksdveiese...............gkvkay 74 
                  + nf+s+ ++qei  F+k + +I+GpNG+GK+  +dA+ ++++ ++++++ ++          + ++ + +ve++++               g++  +
  CDO73402.1 350 ALVNFKSYaGRQEIgPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRASKMRQGKlselihnsaaYPDLTECSVEVHFReiidlpgpnafevvpGSKLVV 448
                 577*****888999788*********************************9999877776666533444555555555777777777777776555555 PP

      AAA_23  75 veltfenkdgry..................................trsiererelskkkgkttkkakle.llei.......deleqfisellgskkii 131
                  +  ++n++ +y                                   +si ++++++ +++++   + le ++++       ++  +++++l + +++ 
  CDO73402.1 449 TRTAYKNNSSKYsingrastysevqtllkgrgidldhnrflilqgeVESIAQMKPKAANENDEGLLEYLEdIIGTsqykepiEKALEEVERLSEDRQKK 547
                 555577777777888888999999999999999999999999988777777777777777777766644414455555555555556666688888889 PP

      AAA_23 132 lnlilflgqerfeefelkdkke............................................................................. 153
                 ln++ + +++r++ +++k++ e                                                                             
  CDO73402.1 548 LNRLRIVDKDRKALEAKKKEAEdylrmvndlvrarsrlwqwyiwkclvneaqldekiakvegdlqeerernqddithldmlqkhydekceafeevkkaa 646
                 ***********977776665558999999999999999999999999999999999999*************************************999 PP

      AAA_23 154 ..........................rleelekeleeledekkllekl.........eqekekekeleeleeeleeilkele 200
                                           ++++l+k++ + e  +     +          +++ k++ele+le+el +++k le
  CDO73402.1 647 aaavkdlatrektqisleekrkhantKVKKLKKAISDDEHARA----EadrtveeseAKIERKKEELENLEQELAQAEKALE 724
                 9999999999998887777777777755555555544333333....02233444546777788899999999999988775 PP

  == domain 2  score: -10.3 bits;  conditional E-value: 9
      AAA_23 122 sellgskkiil.nlilflgqer..................feefelkdkkerleelekeleeledekkllekl.............eqekekek..... 183
                 +++l+ k + + ++i  +++e                       e+ + k++ e+++++ e++e+e ++l++              e      k     
  CDO73402.1 727 RDSLKDKTQVFhDQIEVKQKELqpwaakidakqaevdvatS---ERDALKKKAEAAQEAREKAEAELEQLRDDhrakqaeleqlgaE------Karnqr 816
                 44444444444233333333334444444443344443321...2344444555555555555555555555544444334333431......133333 PP

      AAA_23 184 eleeleeeleeilkele 200
                 e+ + e+el+ +++++e
  CDO73402.1 817 EIRQAEKELQAAQSQIE 833
                 55555555555555554 PP

  == domain 3  score: -11.6 bits;  conditional E-value: 9
      AAA_23   90 iererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkke................................. 153 
                  i ++  + ++ +++ k ++++  +i++l+++i++                       el++ ++                                 
  CDO73402.1 1094 IADTEGRVRELKSQSKPDAKDVSRIAALDREIDSAT--------------------VELEKLQQrttsieteikalekkileiggarllsqkskvdg 1170
                  222222222222222222222222222222222211....................11111111111122222222222222333333333333445 PP

      AAA_23  154 ........rleelekeleeledekkllekleqekekekeleeleeeleeilkele 200 
                            e  + e  ++++ek+ ++ +   +++ +el+e++ el e++++le
  CDO73402.1 1171 lrlhinlaNDEITKAEVAKAKAEKDRVKYQSAVENNIAELKEVQGELAELEEQLE 1225
                  5555554444444444555555555555556667777799999999999999986 PP

  == domain 4  score: -13.6 bits;  conditional E-value: 9
      AAA_23  124 llgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekl.....eqekekekeleeleeeleeilkele 200 
                  ++ + k++ +++ ++ + +++  elk+ + +l+ele++lee     ++l+++       +++  + l++l+eel e +++++
  CDO73402.1 1186 EVAKAKAEKDRVKYQSAVENNIAELKEVQGELAELEEQLEECGGYMSQLRQQvdvaqAAAEKASDDLNKLKEELDEKTEQIQ 1267
                  3333333333333333333333333333333333333333322211111111233321222222222222222222222221 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.6
      AAA_23   97 skkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllek 174 
                  + +++  t k+     e  +  ++++e++++ k+ l ++  + q ++e ++++++++++ +l++e++e+ d+   l+k
  CDO73402.1 1364 YTEQELATFKK----RELVADVELLDEKVKNAKPDLGVLKDYRQREEEFLRRAADLDEVTKLRDEKKEEYDT---LRK 1434
                  33333222222....223344567888888889999888888888876677776666666666665555444...333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   8.1e-09   1.6e-05       2      46 ..     347     392 ..     346     398 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 8.1e-09
      AAA_29   2 krlqlvNWgtfdg.htieidlkgatlltGpsGsGKSTllDAiqalL 46 
                 +++ lvN  ++ g ++i    k++  ++Gp+GsGKS  +DA+ +++
  CDO73402.1 347 HKMALVNFKSYAGrQEIGPFHKSFSAIVGPNGSGKSNTIDALLFVF 392
                 6899*********99887776889******************9886 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8  10.7         9   1.8e+04      92     168 ..     699     777 ..     684     795 .. 0.64
   2 ?    2.4   8.2     0.045        90      98     146 ..     797     846 ..     787     850 .. 0.85
   3 ?   -0.4   0.4      0.32   6.4e+02     120     161 ..    1054    1093 ..    1040    1106 .. 0.65
   4 ?   -0.3   6.0      0.31   6.1e+02      94     146 ..    1093    1146 ..    1057    1149 .. 0.73
   5 !   15.9   2.0   3.3e-06    0.0065      92     150 ..    1184    1242 ..    1183    1246 .. 0.93
   6 ?   -0.8   0.9      0.43   8.6e+02     113     144 ..    1247    1278 ..    1241    1280 .. 0.83
   7 ?   -1.3   0.3      0.61   1.2e+03      98     123 ..    1398    1423 ..    1394    1425 .. 0.88

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 9
     DUF4349  92 eaRlkaleasedrllallekaks.vedll.eiereLsevqaeieslegqlryLdnqvaystvtvtlrepeaeteaeeee 168
                 ea+++ ++++ ++l++ l++a++ +e++  +++++ +    +ie  +++l+ ++ +++  + +v++ ++e+ + ++++e
  CDO73402.1 699 EAKIERKKEELENLEQELAQAEKaLEEIRdSLKDKTQVFHDQIEVKQKELQPWAAKIDAKQAEVDVATSERDALKKKAE 777
                 6777777777777777776655413444322444444456677777777777777777777777777777666555544 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.045
     DUF4349  98 leasedrllall.ekaksvedlleiereLsevqaeieslegqlryLdnqv 146
                  +a+++ l++l  eka +  ++ ++e+eL+  q++ie l+++  + +++v
  CDO73402.1 797 HRAKQAELEQLGaEKARNQREIRQAEKELQAAQSQIEGLRAKASASRQKV 846
                 567788888887689*************************9988777766 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.32
     DUF4349  120 eiereLsevqaeieslegqlryLdnqvaystvtvtlrepeae 161 
                  e+  ++ e +a++++l+++  +L+   ay +v++++r+  ++
  CDO73402.1 1054 EAVHQMRELEAQLDALKQSAPRLE--LAYDKVNLDIRNAAKR 1093
                  344455666677777777777775..6788888888876655 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.31
     DUF4349   94 Rlkaleasedrllall.ekaksvedlleiereLsevqaeieslegqlryLdnqv 146 
                  R++  e  ++ l++    +ak+v+ + ++ re+ + + e+e+l+++  +++ ++
  CDO73402.1 1093 RIADTEGRVRELKSQSkPDAKDVSRIAALDREIDSATVELEKLQQRTTSIETEI 1146
                  3343333344443333134889999********************999888765 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 3.3e-06
     DUF4349   92 eaRlkaleasedrllallekaksvedlleiereLsevqaeieslegqlryLdnqvayst 150 
                  +a ++  +a+ dr++   +  +++++l e++ eL+e ++++e+  g + +L++qv+ ++
  CDO73402.1 1184 KAEVAKAKAEKDRVKYQSAVENNIAELKEVQGELAELEEQLEECGGYMSQLRQQVDVAQ 1242
                  67788999999999999999************************************875 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.43
     DUF4349  113 ksvedlleiereLsevqaeieslegqlryLdn 144 
                  k  +dl ++++eL e +++i + +++   L++
  CDO73402.1 1247 KASDDLNKLKEELDEKTEQIQAFRQTEMKLQQ 1278
                  4568999*************999998888876 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 0.61
     DUF4349   98 leasedrllallekaksvedlleier 123 
                  l+++++r +++l++a++++++ ++ +
  CDO73402.1 1398 LKDYRQREEEFLRRAADLDEVTKLRD 1423
                  688999***************99876 PP

>> zf-PARP  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.85   1.7e+03      61      80 ..     529     550 ..     517     551 .. 0.77
   2 ?   10.9   1.2   0.00031      0.63      14      77 ..     564     635 ..     558     653 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.85
                 .....EETTTTS-HHHHHHHHH CS
     zf-PARP  61 e..eeiegfeeLekedqekvrd 80 
                    +++e +e L+++ q+k+++
  CDO73402.1 529 PieKALEEVERLSEDRQKKLNR 550
                 13489*************9975 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00031
                 --B--SSSEEEEE-...------EEEEHHHHHTSS.S--S-GGG...............EETTTTS-HHHHHH CS
     zf-PARP  14 kkkIakgelRlgkkveieeseskrWyHvgCftekq.iknkketkeieee........eeiegfeeLekedqek 77 
                 kkk a++ lR+   +  ++s  ++Wy ++C+ ++  +++k  ++e ++         ++i  ++ L+k   ek
  CDO73402.1 564 KKKEAEDYLRMVNDLVRARSRLWQWYIWKCLVNEAqLDEKIAKVE-GDLqeerernqDDITHLDMLQKHYDEK 635
                 56778899*****9999999**********887650444444443.332567888887777777777755554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.34      14      32 ..     371     389 ..     366     427 .. 0.88
   2 ?   -3.0   0.1       4.7   9.4e+03      79      96 ..     509     541 ..     454     578 .. 0.59
   3 ?  -10.4  12.8         9   1.8e+04      40      48 ..     739     747 ..     648     876 .. 0.60
   4 ?   -2.1   1.9       2.6   5.3e+03      85      85 ..    1168    1168 ..    1000    1276 .. 0.62
   5 ?    0.7   0.0      0.34   6.8e+02      99     116 ..    1486    1503 ..    1335    1505 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                 EEEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlklla 32 
                  aivG+nG+GKS  + +l+
  CDO73402.1 371 SAIVGPNGSGKSNTIDALL 389
                 69**********9999885 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.7
                 H...............HHHTCHHHHHHHSTTGG CS
                 x...............xxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n...............esdeeiekalsklglke 96 
                 n               +++e iekal++++   
  CDO73402.1 509 NdeglleylediigtsQYKEPIEKALEEVERLS 541
                 234444445555554433333444444444322 PP

  == domain 3  score: -10.4 bits;  conditional E-value: 9
                 EEEEETTCE CS
                 xxxxxxxxx RF
    ABC_tran  40 Geilldgkd 48 
                 ++i++++k+
  CDO73402.1 739 DQIEVKQKE 747
                 233333333 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.6
                  H CS
                  x RF
    ABC_tran   85 i 85  
                  +
  CDO73402.1 1168 V 1168
                  2 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.34
                  CBGESTTSGGS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
    ABC_tran   99 dtvvksspssLSgGqkqr 116 
                   ++  ++ s+LSgG+k r
  CDO73402.1 1486 PKKSWKNISNLSGGEKAR 1503
                  333336679999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3093  (0.172514); expected 358.6 (0.02)
Passed bias filter:                      735  (0.040995); expected 358.6 (0.02)
Passed Vit filter:                       291  (0.0162307); expected 17.9 (0.001)
Passed Fwd filter:                       172  (0.0095934); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 3.84u 0.35s 00:00:04.18 Elapsed: 00:00:00.84
# Mc/sec: 5671.93
//
Query:       CDO73403.1  [L=448]
Description: hypothetical protein BN946_scf185013.g37 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-37  127.6   0.0    8.8e-32  110.5   0.0    2.1  2  Pkinase      Protein kinase domain
    3.5e-19   69.1   0.0      5e-19   68.6   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.055   13.4   0.0    1.9  2  APH          Phosphotransferase enzyme family
      0.098   12.0   0.0       0.15   11.4   0.0    1.2  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
       0.13   11.5   0.0        0.2   10.9   0.0    1.2  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   2.5e-35   8.8e-32      21     196 ..      47     254 ..      36     280 .. 0.87
   2 !   15.1   0.0   3.1e-06     0.011     216     264 .]     322     402 ..     301     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 2.5e-35
                 TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH..........HHSS--HH......... CS
     Pkinase  21 ketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle..........rkgslsee......... 98 
                 +++   vA+K  +++ + +k+ +++ +E++il +l+h n+v+++++ +e  +++l++ + yv+++ + ++l+                 +         
  CDO73403.1  47 TSQTSPVAIKSASTHPKLSKQPHDIGKELRILLSLRHVNVVEVLGYTYEppTSTLHFWMPYVPCD-VYQVLScpdfspyiipY------Dgqppepsse 138
                 445678****************************************9998888999*******99.77777767665544441......2445555677 PP

                 .......HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHH.TTSCB.SHHHH CS
     Pkinase  99 .......eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvl.keney.skkvD 179
                         +k++++q+l++l+y+Hs+gi HrDlKp N+L+   g +K++DFG++   + +++         +   v+t  Y+APE+l ++++y   ++D
  CDO73403.1 139 rtssflvVLKSLVYQTLSALAYVHSQGIAHRDLKPRNLLLTAGGLMKLVDFGVSWTEKADERdlwpeargsMCFDVATGPYRAPELLfGATDYdPYASD 237
                 78888989*********************************9999*********999999889*****99999999************9999*7789** PP

                 HHHHHHHHHHHHHSS-S CS
     Pkinase 180 vWslGvilyelltgkpp 196
                 +WslG +l+e++t   +
  CDO73403.1 238 LWSLGALLAEFFTPLRL 254
                 **********9986555 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.1e-06
                 HHHHCT.SHH...HHHTTS...............................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 216 ilkilg.etkeklpeasei...............................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++k+ g +t e++p+ +++                                e++ dl++kll + p++Rl a+++l+hp +
  CDO73403.1 322 VFKVHGtPTAETWPRFKSLpdaqkvtfvqvpsvdlrrllpnlppeefqpeHEDCVDLVSKLLVYPPESRLKAQDALSHPLF 402
                 566666667778888888888888888888888888889999999999999***************************987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.4e-22     5e-19      14     200 ..      38     250 ..      25     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.4e-22
                  EEEEEEEETTTTSSEEEEEEEEESTT.SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT............. CS
  Pkinase_Tyr  14 kVvegtlkgekekkevkVavKtlkee.ateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk............. 95 
                   V ++ ++  +++++  Va+K+ + + + +++ +++ +e++i+ +l+h n+v++lg  +   +++l + + yv+  d+ + L                
   CDO73403.1  38 FVTRAWYH--DTSQTSPVAIKSASTHpKLSKQPHDIGKELRILLSLRHVNVVEVLGYTYepPTSTLHFWMPYVPC-DVYQVLSCPdfspyiipydgqp 132
                  56677777..889999******9665145666899**********************994444446666777664.8889999889************ PP

                  .....CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGG...GGS-HHHHHHSE. CS
  Pkinase_Tyr  96 .....ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpv...kWmapEslkekk. 181
                       e+++  l  l s+++q  ++++y++s+ + Hrdl  rN Ll+ + ++k+ DfG++ + + d++    +++++  + v    + apE l+  + 
   CDO73403.1 133 pepssERTSSFLVVLKSLVYQTLSALAYVHSQGIAHRDLKPRNLLLTAGGLMKLVDFGVSWTEKADERDlwpEARGSMCFDVatgPYRAPELLFGATd 230
                  **98766666677788999*****************************************9997777665554444444333223699*****98876 PP

                  .EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 182 .ftsksDvWsfGvllwEift 200
                      +sD Ws G ll E ft
   CDO73403.1 231 yDPYASDLWSLGALLAEFFT 250
                  33579*************98 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.055     157     194 ..     156     190 ..     128     193 .. 0.78
   2 ?   -3.3   0.1       1.9   6.9e+03     193     209 ..     226     242 ..     226     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                 HHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 157 aallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                  al+    ++++ H+Dl+p+Nll++   g +  ++Df+
  CDO73403.1 156 SALAYV-HSQGIAHRDLKPRNLLLT--AGGLMKLVDFG 190
                 555543.57999*************..56666799997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                 -TT-EEEECCHHHHCCH CS
         APH 193 fedaglgpplyDlavll 209
                 f+ + + p++ Dl++l 
  CDO73403.1 226 FGATDYDPYASDLWSLG 242
                 56677889999999886 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.3e-05      0.15     130     167 ..     157     190 ..     146     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.3e-05
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 + a  h+ g+ H+dl ++n+ll +++     + l+D+ 
  CDO73403.1 157 ALAYVHSQGIAHRDLKPRNLLLTAGG----LMKLVDFG 190
                 56778*******************99....88888885 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-05       0.2     151     197 ..     152     198 ..     136     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtk 197
                   q +   a+ +++g+ h +++++nlll   g ++l +f+  ++ ++ 
   CDO73403.1 152 YQTLSALAYVHSQGIAHRDLKPRNLLLTAGGLMKLVDFGVSWTEKAD 198
                  56667789******************************999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3401.55
//
Query:       CDO73404.1  [L=165]
Description: hypothetical protein BN946_scf185013.g38 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.024   14.6   0.0    1.2  1  DUF5359   Family of unknown function (DUF5359)


Domain annotation for each model (and alignments):
>> DUF5359  Family of unknown function (DUF5359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.3e-06     0.024       5      34 ..      24      53 ..      21      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-06
     DUF5359  5 EriliKlviiqfifLllaQlllhqlsllpy 34
                E+ ++ l+ii + +L + Q+++ +l+ +p+
  CDO73404.1 24 EQAILSLIIIAVTCLAIGQFVIEYLDCAPE 53
                899***********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1271.33
//
Query:       CDO73405.1  [L=1396]
Description: hypothetical protein BN946_scf185013.g39 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-40  139.5   0.0    1.8e-40  139.0   0.0    1.2  1  Pkinase        Protein kinase domain
    6.8e-29  100.9   0.0    9.4e-29  100.5   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
      0.018   15.0   2.6      0.089   12.7   0.0    2.9  3  APH            Phosphotransferase enzyme family
      0.023   13.7   0.0      0.036   13.0   0.0    1.2  1  Haspin_kinase  Haspin like kinase domain
        5.9    5.3   6.3       0.46    8.9   0.1    1.9  2  FUSC           Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.0     5e-44   1.8e-40       4     261 ..      33     299 ..      30     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 5e-44
                 EEEEEEESSEEEEEEEETT...TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   4 leklGeGsfGkVykaveke...tgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladllerkg 93 
                 ++ l +G+f+ +y ++ ++   +  + ++K+i++ ++   +e  v +E+ i++ l+ hpniv l+++  +     + e+++++ey++gg l d+++r+ 
  CDO73405.1  33 ERYLSQGGFAHIYLVRTAQplyNTTHHVLKRIAVPNEAMLSE--VKKEVDIMRILRgHPNIVFLIDAAWHrmangTYEVFILMEYCPGGGLIDMMNRRL 129
                 567789999999999876534367888999999999988776..*********************98777688889999****************9544 PP

                 S..--HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBS CS
     Pkinase  94 s..lseeeakkiakqilegleylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneys 175
                    l+e+e+  i+  ++egl+ +H+ +  i+HrDlK eNiL  +    K++DFG a+ +++  +            ++  t +Y+APE++    +++++
  CDO73405.1 130 RerLTEAEILTIFVDVCEGLAAMHALKppILHRDLKVENILQASPTSYKLCDFGSATPVQKVPSntqelrmleaDLNRHTTLQYRAPEMIdvhLRRPID 228
                 335*********************88888**************9999**********99998888899**9987667899**********9877899** PP

                 HHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 176 kkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqh 261
                 +k+DvW+lGv+ly+l + ++pf+++                l il +++ k+p     s+++  l+ ++lk+   +R+++ e+lqh
  CDO73405.1 229 EKSDVWALGVLLYKLCYYTTPFEEHGP--------------LAIL-NVQYKIPPYPVYSSQMNALIASMLKEHGAQRPSVFEILQH 299
                 ***********************2222..............2233.247899*********************************9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   2.6e-32   9.4e-29       2     258 ..      31     299 ..      30     300 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 2.6e-32
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE...SSSS....EEEEEE--TTEBHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct...keep....llivteyvkgGdLlkf 91 
                  ++++ l +G f++++  +   +   ++++ ++K +   +++   +e+ +e++im+ l  hpniv l+ +        +    ++i++ey++gG L ++
   CDO73405.1  31 TVERYLSQGGFAHIYLVRTA-QPLYNTTHHVLKRIAVPNEAM-LSEVKKEVDIMRILrGHPNIVFLIDAAWhrmA--NgtyeVFILMEYCPGGGLIDM 124
                  578899***********999.666677777789985555444.899***********99********99985441..144569*************** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.......EETTSSTSGGGGS-HHHHHHS CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlsenkvvkisDfGLardiekddey.......vkkeeaklpvkWmapEslkek 180
                  ++++ +e+lt  ++l + ++v++G++ +++ k  ++Hrdl   N+L ++ +  k++DfG a  ++k  +        +++ ++++ +++ apE+++ +
   CDO73405.1 125 MNRRLRERLTEAEILTIFVDVCEGLAAMHALKppILHRDLKVENILQASPTSYKLCDFGSATPVQKVPSNtqelrmlEADLNRHTTLQYRAPEMIDVH 222
                  ****************************9876669************************999886544332233444566778899*********988 PP

                  E...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 181 k...ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                      + +ksDvW+ Gvll+ ++    +p+++  +      l+ +++++     +++++ l+ + ++e+ ++Rp+  e++++
   CDO73405.1 223 LrrpIDEKSDVWALGVLLYKLCY-YTTPFEEHGPLA---ILNVQYKIPPYPVYSSQMNALIASMLKEHGAQRPSVFEILQH 299
                  8788*****************99.568888776655...6678999999999**********************9888765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05     0.089      24     113 ..      60     160 ..      36     224 .. 0.66
   2 ?   -3.4   0.0       2.1   7.4e+03     121     161 ..     336     373 ..     277     380 .. 0.57
   3 ?    0.1   0.3      0.17   6.1e+02      70     120 ..     809     866 ..     787     899 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
                 EEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE......EEEEEE----EE-SS........HHHHHHHHHHHHHHHHHHCCHH CS
         APH  24 vlrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigl......lfalieyvpgrsllr........klsaaqlpellealgeflaalh 106
                 vl+r++ +      e+ +ev+++r L++++     ++ +  d++ +++      +f l+ey+pg  l +        +l++a++  ++ ++ e laa+h
  CDO73405.1  60 VLKRIAVPneAMLSEVKKEVDIMRILRGHPN----IVFL-IDAAWHRMangtyeVFILMEYCPGGGLIDmmnrrlreRLTEAEILTIFVDVCEGLAAMH 153
                 555544443346678899***********44....3321.23333333344455***************999999999999999999************ PP

                 CH.-STT CS
         APH 107 qvdpaal 113
                 ++ p+ l
  CDO73405.1 154 ALKPPIL 160
                 **66522 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.1
                 HTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH 121 qdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                 +  ++l++l+s + +++a +++    e++e vl+a+a+ ++
  CDO73405.1 336 VASNPLEDLVSFKSQSPAKNVGV---EAREKVLEAIAPMRR 373
                 33456677777777777777777...444447777777766 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.17
                 EEEEEE----EE-SS.......HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHC CS
         APH  70 lfalieyvpgrsllr.......klsaaqlpellealgeflaalhqvdpaalpladfla 120
                 + al+  ++++s+++       +++ + + el +++ ++l +l ++++ ++  + +++
  CDO73405.1 809 PIALQKPLEAESVDPspaaglpQMTRSATTELEREWNRALDRLDRIPAGKSEREKERE 866
                 5555556666666666666677777788888888888888888888544333333332 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.9e-06     0.036      97     253 ..      25     184 ..      14     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-06
  Haspin_kinase  97 lneadlasllndseklssevyqtke.....kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflv 187
                    +n+++++ +   s++ + ++y +++     + ++ vlK i++   ++   s++   ke   +++++g  p++++l+ +   + +     + ++f++
     CDO73405.1  25 VNKYTVTVERYLSQGGFAHIYLVRTaqplyNTTHHVLKRIAV--PNEAMLSEVK--KEVDIMRILRGH-PNIVFLIDAAWHRMA---NGTYEVFIL 112
                    566666777777888899999888866777788889999887..7777777333..899*********.***********9999...677788888 PP

  Haspin_kinase 188 lllkdkGtdLeev.....klkswkqalsifwqivkiLyvaEt.kfeFEHRdLhldniLvdknlnvtlidlkl 253
                    ++   +G  ++ +     +  + +++l if ++ + L++  + k    HRdL+++niL  +     l+d+  
     CDO73405.1 113 MEYCPGGGLIDMMnrrlrERLTEAEILTIFVDVCEGLAAMHAlKPPILHRDLKVENILQASPTSYKLCDFGS 184
                    88888888777665533333456899*********999876548899**********************965 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   2.5      0.49   1.7e+03     581     635 ..     840     891 ..     824     903 .. 0.49
   2 ?    8.9   0.1   0.00013      0.46     146     211 ..    1105    1170 ..    1101    1177 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.49
        FUSC 581 laaearaaldavlaalafrapaaarsarrlrapaaalraldaalaalaaseatsa 635
                 l +e+ +ald++ +++   a + +r+++r+   +++ ++ +aa+++l++++++s 
  CDO73405.1 840 LEREWNRALDRL-DRIP--AGKSEREKEREGEKERVQAEREAAQRKLERRRSPSP 891
                 555555555543.3333..333333444444444555555555555444444443 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00013
        FUSC  146 salvfPrsvapalrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayes 211 
                  s+ ++P s+++   a++++  ++a+ +a++al++ +++++r+++r+  ++d+++l + +   a+ +
  CDO73405.1 1105 SMFISPVSASRSTPAEISSSTEAAASFAQQALSPPDTPRSRRSTRRSSISDMVQLYETIGSSATGG 1170
                  78999**************************************************99998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.42
# Mc/sec: 9917.11
//
Query:       CDO73406.1  [L=364]
Description: hypothetical protein BN946_scf185013.g40 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-23   83.3   0.0      3e-23   82.7   0.0    1.3  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    1.4e-07   31.7   0.0    2.8e-07   30.8   0.0    1.4  1  NAD_binding_11   NAD-binding of NADP-dependent 3-hydroxyisobu
    1.3e-06   28.5   0.0    2.6e-06   27.6   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00015   22.3   0.0    0.00028   21.4   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
        0.2   10.6   0.0       0.27   10.1   0.0    1.2  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   8.5e-27     3e-23       1     147 [.      33     196 ..      33     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 8.5e-27
                    EEEEE--SHHHHHHHHHHHHTT-E.......EEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC-..... CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagyk.......vavynrtkekveelvaeg....akaaesieelvasldvvitmvkagkavdevieglleal..... 80 
                    +igf GlG MG +ma+nl+k   +       ++v+nrtk+k+e+l++e     + +a+++e++++++dv++t +++++ v+ v++  ++al     
     CDO73406.1  33 QIGFCGLGAMGYPMARNLAKWRNQhvpgslpIIVWNRTKSKAEDLLKELgdnmIAVADTLEQVASDCDVIFTNLSSDDVVRGVYQVFANALkepkp 128
                    69****************76543222222229**************996688999******************************97777777777 PP

                    -TT-EEEE-S---HHHHHHHHHHHHHTT.-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHH CS
  NAD_binding_2  81 kkgdilidgstsspedtrelakelkekg.lkfldaPVSGGeegAekGtLsimvGGseeafervkpvle 147
                     k++i++++st+ p+ + el + l++    +f+  PV G  + A++++L i+++G+  + ++v+++l 
     CDO73406.1 129 TKNKIFVETSTIYPSLAAELDTLLSNVPsTHFITSPVFGPPAAANAAQLLIVMSGDYRSKKEVAHLLV 196
                    99*********************9997659***************************99999998874 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   7.8e-11   2.8e-07       5     108 ..     215     318 ..     212     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 7.8e-11
  NAD_binding_11   5 avKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfd..pgFaldlmlKDlglalelareagaplpllal 97 
                     ++Klv n l+  +l  ++E+++l ekaG+ +  v + i++   +   l n+ + ++l+++fd  +gFa+d  lKD + +  la+e++ p+p l +
      CDO73406.1 215 TFKLVGNSLILGSLELLAEVFTLSEKAGIGAPLVHQFIKEVMPAP-PLVNYGE-KMLHDQFDgsKGFAIDGGLKDSAHIRRLATELDSPMPALDA 307
                     89*************************************999555.4455665.799999974479***************************** PP

  NAD_binding_11  98 aeqlyaaaaae 108
                     a+q + +a+a 
      CDO73406.1 308 AHQHMLTARAL 318
                     ***99988764 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   7.1e-10   2.6e-06      11      95 ..      30     118 ..      23     139 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.1e-10
                   TT-EEEEES-SHHHHHHHHHHHCCT-CE......EEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHH CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkk......vvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeev 95 
                   ++ ++   G G m+  +a++L++ + ++      ++v NRt ++a++l +el+++   +   + l+++ +++dv+++  +s +++    +v
    CDO73406.1  30 HSLQIGFCGLGAMGYPMARNLAKWRNQHvpgslpIIVWNRTKSKAEDLLKELGDN--MIAVADTLEQVASDCDVIFTNLSSDDVVRGVYQV 118
                   66788899*************987766523333379****************888..555668899999***********99988665544 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.7e-08   0.00028       1      87 [.      33     124 ..      33     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.7e-08
                    EEEEETTSHHHHHHHHHHHHTTS....-GGCEEEEEESSCCCHHHHHHHHC..-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored   1 kigiiGaGnmgealasgllaaga....qpheivvansrnpekaeelaeelg..vkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87 
                    +ig+ G G mg  +a++l++           i+ + +r+++kae l +elg    + a + e++a+++dv++  +   dv   + +++++alk
     CDO73406.1  33 QIGFCGLGAMGYPMARNLAKWRNqhvpGSLPII-VWNRTKSKAEDLLKELGdnMIAVADTLEQVASDCDVIFTNLSSDDVVRGVYQVFANALK 124
                    59****************997544553233455.66***************77444555899**********988888877777777555555 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.5e-05      0.27     156     204 ..      63     109 ..      29     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.5e-05
                      EEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE----S CS
  OCD_Mu_crystall 156 evriydrdeeaaekfaenlqefefevsackseeeavegadivvtvTaak 204
                       + +++r++++ae ++++l   +  + +++  e++++++d++ t   ++
       CDO73406.1  63 PIIVWNRTKSKAEDLLKELG--DNMIAVADTLEQVASDCDVIFTNLSSD 109
                      4779*************999..6889999999**********9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2470.63
//
Query:       CDO73407.1  [L=299]
Description: hypothetical protein BN946_scf185013.g41 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.3   0.3       0.31   11.5   0.3    1.4  1  Mfp-3     Foot protein 3


Domain annotation for each model (and alignments):
>> Mfp-3  Foot protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   1.7e-05      0.31      10      51 ..      15      55 ..      11      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
       Mfp-3 10 vvlvliGsfavesdaadyyGpnyGpprryGGgyynrynryar 51
                vvlv   ++a+       y pn   prryG      yn+y+r
  CDO73407.1 15 VVLVQARTYAISLKPPVVY-PNKTGPRRYGERKTYLYNQYTR 55
                5666666777766666555.99999*****998888999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2317.53
//
Query:       CDO73408.1  [L=596]
Description: hypothetical protein BN946_scf185013.g42 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-20   71.5   1.9    4.6e-20   70.9   1.9    1.3  1  Fip1           Fip1 motif
  ------ inclusion threshold ------
          1    8.7   4.1          2    7.7   4.1    1.3  1  DUF5421        Family of unknown function (DUF5421)
        8.2    7.1  11.6        1.3    9.7   6.0    2.5  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Fip1  Fip1 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   1.9   7.7e-24   4.6e-20       1      42 [.     248     289 ..     248     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 7.7e-24
        Fip1   1 didldqleekpWrkpGaDisDYFNYGfdEetWkeYcekqekl 42 
                 ++dl+++ ekpWr+pG+D+sD+FNYGfdE +W++Yc +++++
  CDO73408.1 248 EYDLNAMAEKPWRRPGSDLSDWFNYGFDEVSWEAYCYRRREM 289
                 689************************************998 PP

>> DUF5421  Family of unknown function (DUF5421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.1   0.00033         2      17      92 ..      19      97 ..      12     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00033
     DUF5421 17 rnsirteahepkdqr...evkvfsleGrssskqekadktanktssrqearkGaeekaveektaGvsskeeekekGdnfl 92
                + +++t  ++p+d+r   e    + eG     +e+a k++n   s   a    ee+ ve+ t G    eee+++ d++ 
  CDO73408.1 19 KPQVQTSVPQPRDNRislEQTRSASEGLVAKLEEQAAKVTNGDGSASGAVDAGEEEPVENGTPGDEEEEEEESEDDDIE 97
                56788999******9555444556799999999********999999999999*******************9998865 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.0   0.00021       1.3      39      82 ..      50      94 ..      30     100 .. 0.54
   2 ?   -1.5   0.3      0.64   3.8e+03      62      71 ..     204     213 ..     181     218 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX--SS CS
  Ribosomal_60s 39 langaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeee.Eeeddd 82
                   l++ aak++ + ++a  a+ a+++++ +   + +eeee Ee++dd
     CDO73408.1 50 LEEQAAKVTNGDGSASGAVDAGEEEPVENGTPGDEEEEeEESEDD 94
                   333344444445555555555555555544433333332445443 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.64
                    XXXXXXXXXX CS
  Ribosomal_60s  62 aaaaaeekkk 71 
                     +a++e++k 
     CDO73408.1 204 HEAEKEAAKD 213
                    2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4492.90
//
Query:       CDO73409.1  [L=186]
Description: hypothetical protein BN946_scf185013.g43 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.006   16.6   0.0     0.0091   16.1   0.0    1.4  1  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.024   14.7   0.0    2.5  3  Arm              Armadillo/beta-catenin-like repeat
      0.031   14.5   0.1        3.8    8.0   0.0    2.6  2  HEAT             HEAT repeat
      0.053   14.0   0.1        3.1    8.4   0.0    3.0  3  HEAT_EZ          HEAT-like repeat
       0.13   12.3   0.1       0.61   10.1   0.0    2.1  2  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
       0.19    9.9   0.0       0.28    9.3   0.0    1.3  1  KAP              Kinesin-associated protein (KAP)


Domain annotation for each model (and alignments):
>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     3e-06    0.0091      25      91 ..      42     122 ..      27     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilnd.....mvkekgflselaklleDenprVvanalaalteisekse.........n 91 
                 p+ ++++  dp  Rk a ++v++Li+nd     + + k+++ +l + l+D++++Vv  a  +l ++   ++         +
  CDO73409.1  42 PIIQKMESVDPLERKWACVAVSNLIQNDpstrrLLQGKNIVGNLITRLSDSEEEVVVEAAGSLRNLCIDGGfdicaemynK 122
                 5666777788999***********999966665688899********************9999988777554444444441 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.45   1.3e+03      32      39 ..      58      65 ..      58      66 .. 0.93
   2 ?   14.7   0.0   7.9e-06     0.024      17      40 ..      85     108 ..      70     109 .. 0.88
   3 ?   -3.2   0.1       3.4     1e+04      32      37 ..     167     172 ..     165     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.45
                HHHHHHHH CS
         Arm 32 AawALsNL 39
                A+ A+sNL
  CDO73409.1 58 ACVAVSNL 65
                8******9 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.9e-06
                 HHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  17 LvrLLssedeevqeeAawALsNLa 40 
                 L++ Ls+  eev+ eAa+ L+NL+
  CDO73409.1  85 LITRLSDSEEEVVVEAAGSLRNLC 108
                 777799*****************9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.4
                 HHHHHH CS
         Arm  32 AawALs 37 
                 ++w+Ls
  CDO73409.1 167 ILWCLS 172
                 68**97 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.026        78       1      29 [.      40      67 ..      40      68 .. 0.87
   2 ?    8.0   0.0    0.0013       3.8       3      28 ..      83     108 ..      81     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.026
                HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  1 llPlllkllsDpspeVReaAakaLgalae 29
                +lP+++k+ ++ +p  R+ A+ a+ +l++
  CDO73409.1 40 ILPIIQKM-ESVDPLERKWACVAVSNLIQ 67
                89*****7.99999999999999999876 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0013
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                   l++ lsD++ eV   Aa +L +l+
  CDO73409.1  83 GNLITRLSDSEEEVVVEAAGSLRNLC 108
                 568889****************9998 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.13   3.8e+02      29      55 .]      39      65 ..      28      65 .. 0.75
   2 ?    8.4   0.0     0.001       3.1      28      55 .]      80     107 ..      76     107 .. 0.93
   3 ?   -0.8   0.0       0.8   2.4e+03      22      43 ..     128     149 ..     126     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.13
     HEAT_EZ 29 ilpaLlalLnddsdeVRaaAagaLgnl 55
                ++ + ++ +++ +++ R+ A+ a +nl
  CDO73409.1 39 AILPIIQKMESVDPLERKWACVAVSNL 65
                5555566666656677*******9997 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.001
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                  i+  L+ +L+d++ eV   Aag L+nl
  CDO73409.1  80 NIVGNLITRLSDSEEEVVVEAAGSLRNL 107
                 68999********************997 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.8
     HEAT_EZ  22 lqplvpeilpaLlalLnddsde 43 
                 l++++p+i   L ++L +++d+
  CDO73409.1 128 LKTFIPKISTTLSQFLANPKDA 149
                 6889999999999999888875 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0002      0.61      37      68 ..      46      77 ..      33     106 .. 0.79
   2 ?   -1.1   0.0      0.63   1.9e+03      18      45 ..     152     180 ..     139     183 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
  Atx10homo_assoc 37 niDdnnPfirewailairnLlegneenqelva 68
                     ++++ +P+ r+wa +a+ nL+++ +  ++l++
       CDO73409.1 46 KMESVDPLERKWACVAVSNLIQNDPSTRRLLQ 77
                     567889*****************999998876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.63
  Atx10homo_assoc  18 evqdkvreldg.leliLsqcniDdnnPfi 45 
                      ++q+ v e    + +iL + +i+ + P++
       CDO73409.1 152 NAQKLVYEFADnVITILWCLSIEGEAPVV 180
                      56677777543388999999999888876 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   9.3e-05      0.28     474     521 ..      62     110 ..      50     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.3e-05
         KAP 474 lrnlsqhdgslklqf..idyvgdlarilkesddeelvveclgilanlalt 521
                 + nl q d s++ ++   + vg+l   l++s +ee+vve+ g l nl++ 
  CDO73409.1  62 VSNLIQNDPSTRRLLqgKNIVGNLITRLSDS-EEEVVVEAAGSLRNLCID 110
                 6789999977775441157899999999876.57799**********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1400.47
//
Query:       CDO73410.1  [L=466]
Description: hypothetical protein BN946_scf185013.g44 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
          4    5.4   4.3         14    3.7   4.8    1.5  2  DNA_pol_phi  DNA polymerase phi


Domain annotation for each model (and alignments):
>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   4.8   0.00076        14     637     674 ..     156     193 ..     136     200 .. 0.60
   2 ?   -3.4   0.0      0.11   1.9e+03      41      79 ..     286     324 ..     285     337 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.00076
  DNA_pol_phi 637 lfedededeeddeeeeeeddeededseedddeeesded 674
                  +f ++   ++  ++e+e+d+  ++ +++d+++e+++++
   CDO73410.1 156 IFSGASGADDGGDNEDEDDEGMEDAEDIDMENEDQSDE 193
                  55555555555555555555555555555555555444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.11
  DNA_pol_phi  41 LellkkklkpqgskkgkeerdalfGrLfGlqAllqsgll 79 
                  L l+  + ++ g++ ++e+ d+ +G L G+  l++ +l 
   CDO73410.1 286 LRLVGTEITAAGQERRREMWDIGVGVLWGVSNLFKGSLA 324
                  66777788899999999999*********9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3413.45
//
Query:       CDO73411.1  [L=818]
Description: hypothetical protein BN946_scf185013.g45 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-09   35.7  25.9    7.3e-09   35.7  25.9    2.1  2  TPX2      Targeting protein for Xklp2 (TPX2)
    1.5e-05   24.3   4.1    1.5e-05   24.3   4.1    2.7  3  UPF0564   Uncharacterised protein family UPF0564


Domain annotation for each model (and alignments):
>> TPX2  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.5         2   1.8e+04      21      39 ..     458     476 ..     457     478 .. 0.77
   2 !   35.7  25.9   8.2e-13   7.3e-09       1      55 [.     745     799 ..     745     801 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2
        TPX2  21 ekakeaekeereakkkeee 39 
                 e+a +++  +r a+++++e
  CDO73411.1 458 EQAPAEDLHQRTARTQVSE 476
                 5677788899999999887 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 8.2e-13
        TPX2   1 LrsdeRAekRkeFdkkleekekakeaekeereakkkeeeeeeikqLRkelvfKAq 55 
                 ++++ RA +R++F+++ + +e++ e+++eer+++++ eee+eik+LR+++v+KA+
  CDO73411.1 745 FQTEVRAHEREKFEEARRAREAELERQREERRRQQELEEEREIKELRRRAVPKAN 799
                 89****************************************************8 PP

>> UPF0564  Uncharacterised protein family UPF0564
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6      0.44   3.9e+03     215     227 ..     500     512 ..     458     539 .. 0.59
   2 ?    1.2   0.1     0.017   1.6e+02     221     256 ..     665     700 ..     653     710 .. 0.77
   3 !   24.3   4.1   1.6e-09   1.5e-05     200     279 ..     713     797 ..     705     814 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.44
     UPF0564 215 lakkkkkiepteq 227
                 + ++k+++ +te+
  CDO73411.1 500 AHRRKRSKTTTES 512
                 2222222222222 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.017
     UPF0564 221 kiepteqkpfnfqeskksasreyldsenesikeeke 256
                 + +pt++ +f+f +s +  sr+   +++ s++e++ 
  CDO73411.1 665 SAKPTRPVEFQFATSTRIDSRRADLAQSGSSGESNA 700
                 679************988888776666666666655 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 1.6e-09
     UPF0564 200 eiPdfeklhetFqkelakkkkkiepteqkpfnfqeskksasreyldsenesik.....eekekptekkldekarlaeikpkeqPk 279
                 +iPdf+ lh  +++ la++k++i p +++p+ fq+  + ++re  +++   ++     +++e+  +++l+e+  ++e + +  Pk
  CDO73411.1 713 PIPDFKALHAMQESLLAQRKAEIVPVVPQPIPFQTEVRAHEREKFEEARRAREaelerQREERRRQQELEEEREIKELRRRAVPK 797
                 7*******************************************99877554444444777888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5707.00
//
Query:       CDO73412.1  [L=179]
Description: hypothetical protein BN946_scf185013.g46 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   38.1   0.0    2.8e-09   37.2   0.0    1.4  1  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.6e-13   2.8e-09       3     124 ..      37     174 ..      35     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.6e-13
                 GHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCC.................HHHHHHHHHTCHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTT CS
   Fasciclin   3 lstfvsllekaglaeeLnkkdgglTvFaPtneAfakl.................ppellakllndkkklkeiLkyHvvpetvsssalkkasetlatlle 84 
                  s f+s+ ++++l + +++ + ++T+++Ptn+A+ +l                 ++++ ++l  +kk +++ ++ H++p+ +s ++ ++     +tll+
  CDO73412.1  37 ASIFYSYARETELSKLFSDAHAQITLLVPTNKAVIALprkphegpapiregvilSEAEFDDL--SKKNVERWVQAHIIPSPISLASPQEY----TTLLA 129
                 689**************99999************7776665555444444444455555555..9*****************99988775....77888 PP

                 SSEEEEEEEGGTT......EEEETTEEEEEEEEEEESSEEEEEESS CS
   Fasciclin  85 gaklrvniekgng......tvtvngkarvvrsdieatngvihvidk 124
                 g++++++  +g++      +v++ng +r++    ea+ng+++++d 
  CDO73412.1 130 GKNVTFTPLDGDKdvpewaRVVLNGDVRLT-GIREASNGMMYILDG 174
                 8888888773333456666******88877.778*********994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1424.86
//
Query:       CDO73413.1  [L=357]
Description: hypothetical protein BN946_scf185013.g47 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-67  228.4   0.0    1.3e-67  228.1   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   0.0   7.1e-72   1.3e-67       4     293 ..      27     331 ..      25     332 .. 0.94

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 7.1e-72
                   EE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.--SSSTTSSSS-HHHHHHHHHHHHHHHT- CS
  Aldo_ket_red   4 lGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.dlrdaeiksglskeniresleeslkrLgt 99 
                   lG+w   ++ ++  + + e++++al++Gin+fDtAe Y  g++e+++G+++k+  +kr +++i+tK+ +++ ++++ gls+++i+e  ++ l+rL+ 
    CDO73413.1  27 LGAWLTYGE-TVVGDPVKEIIKTALDHGINMFDTAEGYASGKAEIEMGRVFKELDVKRSDLVITTKIfWGGRGPNDMGLSRKHIVEGTKKCLERLQM 122
                   788877775.999999***************************************************999*************************** PP

                   S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBST CS
  Aldo_ket_red 100 dyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.releeegllelckkkgvpliaysp 191
                   dyvD+++ Hrpd+++p +ee+++a++ ++++G++ ++++S+++++ +e+a     k +   ++a q ++n++ re+ e+++++l++k+++++ +ys+
    CDO73413.1 123 DYVDVIFAHRPDHTVP-MEEIVRAFNFVIDQGWAFYWATSEWTARDIEEAyhvaAKLGLAAPIAEQCQHNMFhRERPEKEYAPLYQKYNIGTTVYSA 218
                   ****************.**********************************99777777789*********************************** PP

                   TGGGTTGTTTSS---SSSCCC-------...........TS-HHHHHHHHHHHHHHHH.TT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGG CS
  Aldo_ket_red 192 lggGlltgkyqseedkedkeprkdlkrd...........ertsknldaaeelselake.hgvslaqlalryalsqpavgivipgasnieqlednlda 276
                   l++Glltgky++  ++++  + +   +d           e+ +k+l+a++el ++a++  g+s+ qlal+++  +p++++vi+gas++eq+ dnl+a
    CDO73413.1 219 LASGLLTGKYNNGIPPDSRFAVH---SDffkeriaklkgEEGQKQLKAVSELAQFAEKeLGCSINQLALAWVAVNPNTSTVILGASKPEQVLDNLKA 312
                   ***********988876432222...2235778************************99************************************** PP

                   GG-..---HHHHHHHHHHH CS
  Aldo_ket_red 277 lel..klseeevaeldell 293
                   le+  kl++e++++++++l
    CDO73413.1 313 LEVipKLTPEVLEKIEKIL 331
                   *877************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2620.67
//
Query:       CDO73414.1  [L=507]
Description: hypothetical protein BN946_scf185013.g48 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-18   65.3   0.0    8.4e-18   64.7   0.0    1.2  1  Adap_comp_sub   Adaptor complexes medium subunit family
    1.2e-05   25.3   0.1      2e-05   24.5   0.1    1.3  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   9.3e-22   8.4e-18      13     205 ..     264     455 ..     255     487 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 9.3e-22
                    -EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE--SSEESEEEEETT-B-TTHHH..H-EEEE---S......EEEE CS
  Adap_comp_sub  13 neiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnkekkielddvsfHqcVnldkfes..ervisFiPpd......geft 100
                    +++++ + E +s+ + ++G +++ e +G+++++++    + +kl L             +++f+q++++dkf s  +rvi +++         ++ 
     CDO73414.1 264 ESVHVVIKEYLSLELMREGGLRNLELRGEMDLHISDPSLARVKLALAPAPAS----YGPELQFKQHPKVDKFASnrDRVIALKDSSrgfpvdQSLA 355
                    6899******************************************987776....5579***********9988899999985444444439*** PP

                    EEEEEE.S--SS--SEEEEEEEEE.-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT-EEEEEEESSTT-EEEEETTEEEEEE--EETT-EE. CS
  Adap_comp_sub 101 LmrYrl.sannvklPfsvkpkvkl.sgdevrveielklkenfkkkltlenvkisiplpkevsnlaiktskGkakynpeenaleWtikklpggness 194
                    ++++r   +++  +P+s++++++  ++  ++v+ie++l+++    ++l++v+isiplp   s ++++   G++  np+ ++l W+i+ ++ +  s 
     CDO73414.1 356 VLKWRYsGKDETYVPLSINCWPTPsNDGTCDVNIEYELEAE---HISLHDVVISIPLPD-GSYPTVSSHSGEWALNPSSHSLDWSIPLINAEERS- 446
                    ******889999**********99878889*********44...479**********98.7889************************9999988. PP

                    .EEEEEEE--- CS
  Adap_comp_sub 195 lsgeleleaes 205
                      g+le+++  
     CDO73414.1 447 --GSLEFSVGG 455
                    ..777777655 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.2e-09     2e-05      49     133 ..      25     109 ..       5     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.2e-09
                     EEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHH CS
  Clat_adaptor_s  49 iveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlk 133
                      ve+ d++ +Y+   +LY ++i ++  n l  ++++hlf  +++ + ++ ++++++ n  ++ ++ dEivs G    ++  +v +
      CDO73414.1  25 SVETADVRYVYQPLEDLYILLITNKSSNILQDIDTLHLFARVVSDLCRSAEQREILKNEFELLSAFDEIVSLGYREPINLMQVRN 109
                     578999*****************************************************************99877777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1285  (0.0716716); expected 358.6 (0.02)
Passed bias filter:                      822  (0.0458475); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 3279.13
//
Query:       CDO73415.1  [L=488]
Description: hypothetical protein BN946_scf185013.g49 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3408.74
//
Query:       CDO73416.1  [L=132]
Description: hypothetical protein BN946_scf185013.g50 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-34  117.5   0.5    2.1e-34  117.1   0.5    1.2  1  ubiquitin       Ubiquitin family
    1.2e-26   92.4  10.1    2.2e-26   91.5  10.1    1.5  1  Ribosomal_L40e  Ribosomal L40e family
    3.1e-16   58.9   0.6    4.9e-16   58.3   0.6    1.3  1  Rad60-SLD       Ubiquitin-2 like Rad60 SUMO-like
    2.3e-05   24.8   0.1    8.4e-05   23.0   0.1    1.8  1  Ubiquitin_2     Ubiquitin-like domain
     0.0051   16.7   0.0     0.0068   16.3   0.0    1.3  1  TBK1_ULD        TANK binding kinase 1 ubiquitin-like domain
     0.0057   17.0   0.0     0.0091   16.3   0.0    1.3  1  Ubiquitin_5     Ubiquitin-like domain
     0.0083   16.2   0.1      0.016   15.3   0.1    1.6  1  Rad60-SLD_2     Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.015   15.3   1.1        4.2    7.5   0.2    2.2  2  Ubiquitin_4     Ubiquitin-like domain
      0.032   14.8   0.0      0.066   13.8   0.0    1.4  1  DUF2407         DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.5   1.1e-37   2.1e-34       1      72 []       3      74 ..       3      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 1.1e-37
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K+ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CDO73416.1  3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5  10.1   1.1e-29   2.2e-26       1      46 [.      78     123 ..      78     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 1.1e-29
  Ribosomal_L40e   1 iepsLrqLAqKyncdKmiCrkCYArlpprAtnCrkkkCghsnnlrp 46 
                     iepsL++LA+KyncdK+iCrkCYArlpprAtnCrk+ Cghs++lrp
      CDO73416.1  78 IEPSLKVLASKYNCDKQICRKCYARLPPRATNCRKRGCGHSSQLRP 123
                     8*******************************************97 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.6   2.5e-19   4.9e-16       1      72 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.5e-19
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++ + ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CDO73416.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************996 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   4.2e-08   8.4e-05      15      80 ..      12      69 ..       1      70 [. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.2e-08
                 EEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 15 sserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                   +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CDO73416.1 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 556678899************************99........5667899**********999995 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.4e-06    0.0068      19      53 ..      17      51 ..       3      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.4e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CDO73416.1 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51
                6789****************************973 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.5e-06    0.0091      34      92 ..      13      72 ..       4      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.5e-06
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLk 92
                  +le++ + t +++ +ki ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+
   CDO73416.1 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLR 72
                 55666666678889999999999999***********************99987546666 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   7.8e-06     0.016      12      88 ..      10      72 ..       1      96 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.8e-06
                 S-EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE- CS
  Rad60-SLD_2 12 GsDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvr 88
                 G+ +  ++ ++++t++++k+k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r
   CDO73416.1 10 GK-TITLEVESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLR 72
                 55.5566777788888888888.....4556533..34559****************955433......35777665 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0021       4.2       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    6.8   0.0    0.0035         7      58      86 ..      43      70 ..      39      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k+ i+ 
   CDO73416.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32
                 7899*************************997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0035
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CDO73416.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789************976 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-05     0.066      14      64 ..      13      59 ..       6      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslass 64
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++ 
  CDO73416.1 13 ITLEVE--SSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDY 59
                566666..6789999999999987..67777789*************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1002.17
//
Query:       CDO73417.1  [L=1054]
Description: hypothetical protein BN946_scf185013.g51 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.7e-189  630.6  71.9   3.8e-131  439.1  61.2    3.0  3  Utp14        Utp14 protein


Domain annotation for each model (and alignments):
>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9  37.6         1   1.8e+04     313     481 ..      86     250 ..      54     261 .. 0.51
   2 !  439.1  61.2  2.1e-135  3.8e-131       2     625 ..     254     902 ..     252     903 .. 0.83
   3 !  206.4   2.9     5e-65     9e-61     623     755 ..     921    1052 ..     920    1053 .. 0.98

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 1
       Utp14 313 rrgeeLrrkiegkeededddddsdedssdseeeedn..seedaeeekrkkleklkeeeekeeeeeeeepekgllamkFmkraearkkeendeeieelrr 409
                 rr+++++ ++ g+    +dddd   +++d+e ++d+  +  +++ee+   ++   ++++k+ +++++++ ++  a+ F +   ++ + ++++ei+  + 
  CDO73417.1  86 RRKRDMKPRLVGE----NDDDDGIAEDEDEEIDSDEafE--ESDEERFAGFSFSHKKKAKS-KAKQKKKGDSSRAVRFAEVDLNEDRDAANSEIDGKEA 177
                 4555555555555....3444444444444444222112..22222233333333333333.4556777778899999999999999999999998844 PP

       Utp14 410 elekgdeeeedeeeeeeee..........kesknvGrrvfgpskkskkkekkkkkkeskakkekreeeeedeskaaeekakk 481
                    ++d++eed+e  ee e                Gr++ + ++++ +  ++k++  s+ +++ + ++ee++++++e  +++
  CDO73417.1 178 SEGSEDDDEEDDE--EE-EgdtgdffdvlD--VLDGRATLEGEETQPE--AAKES--SSLQDRPAAQHEERQDDDEEMGSEE 250
                 4333333333333..22.224689998542..4567777766663222..22222..3333333333333333332222222 PP

  == domain 2  score: 439.1 bits;  conditional E-value: 2.1e-135
       Utp14   2 edeeedeeeelsdded.........edeekhskLlklissldk....................kkkkkkkeekeeseeesefnlsseskgklslsdLla 71 
                 ed+ee+eeee++d++d          de+++++L++++++ld                      +k++   e++e+++e+ef ++s + gk++l+dLla
  CDO73417.1 254 EDDEEEEEEEEDDEDDnilspsedeGDESALQELESFVTGLDVgqkrkapddedgkdaadtkrARKRRLLPERTEAGAENEFIAAS-GAGKVNLDDLLA 351
                 455545555555555579999988888***************99***********9999986544999999************999.699********* PP

       Utp14  72 plek..skdselkkslklleke.kkkkklaaPLpkrqqdrleRkaAyektkeeldkWedtVkrnrraehLsFplqqdkkkekktlaalaskfkp...rt 164
                 ple+   + ++lkks+k l+++ +k k+l+aPLp+r++++l+R+aAye+tkee+dkW++t++r ++aehLsFplq+ ++k +++  +la+kfk+     
  CDO73417.1 352 PLEAqsTNLQSLKKSAKVLASNsGKVKTLSAPLPQRTAEKLDREAAYEQTKEEVDKWKATMQRIKEAEHLSFPLQA-EPKSRTSNLELAAKFKAshaHD 449
                 ****99999**********98899****************************************************.5555677777778888722145 PP

       Utp14 165 elekkiasileesglaeekklekaeelalnklsleevkerraelrkmRellfreeakakRikKIKSKtYrRihrKekekeeekeeealeetdpeaaled 263
                   ++ ++++l+++++ +e++++++e l+ln+ls+eev++rrael+kmR+l+fr+eakakRi+KIKSKtYrR+++Ke+++ +ek  e++e++d+e+a+  
  CDO73417.1 450 TTNSPMDKLLKSAKM-RENEIAQTESLKLNHLSVEEVAARRAELAKMRDLMFRAEAKAKRIAKIKSKTYRRLKKKERARLAEKLGENEEDLDDEEAR-- 545
                 56778*********9.9*****************************************************************999998887776655.. PP

       Utp14 264 serekqerkRaeERmtlKHkntSkWAKsikktgrakwdeeaReaiaeqlrrgeeLrrkiegkeededddddsdedssdseeeednseedaeeekrkkle 362
                     k+e +Ra+ER+tl+Hknt+kWAK +    r ++de++R++i+e+l rge+Lr+ki g+ +d++d+d+sd++s+ ++ e     e  + +k+k+++
  CDO73417.1 546 ---LKREVERARERATLRHKNTGKWAKAMR--ARGELDEDQRRDINEMLDRGEKLRKKIRGE-GDSGDEDESDDESDMEDGE-----EGIAHIKSKAFD 633
                 ...599************************..6678***********************999.6778877777777766666.....6778899***** PP

       Utp14 363 klkeeeekeeeeeeeepekgllamkFmkraearkkeendeeieelrrelekgdeeeedeeeeeeee.........kesknvGrrvfgpskkskkkekkk 452
                 +l++ e++e e+ + ++ k++++mkFmk+a+ar+++++ e+++++++e+ + + +++++eee + +           +++ Gr+v++p++ ++  + + 
  CDO73417.1 634 ELAALETDEPEAPSGQKAKSIFEMKFMKDAMAREQRKAHEMVDDFMKEMGAVNPDDDEAEEEGD-HhegdgpsgaVIQRTGGRAVYRPGAVNTGVRPSG 731
                 *********99999************************************77666666653333.247899****88899**********666555555 PP

       Utp14 453 kkkeskakkekreeeeedeskaaeekakkekskksekkkkkk.keesakeeeeeeeenpwlae...eekkkskkeevaaekssskakkskakakkkkkk 547
                 + ++++++ + ++++   e+++         +  +++ +      +++  + ++e+ npwla+   +++ ++kk+eva++k+s++a+ksk+k +k+ +k
  CDO73417.1 732 SLASDTSSVTLKSSDVPPEARD---------TPVEQSVSPPGsPVSQRPVPPPTESVNPWLAQasdSSAAAQKKHEVAISKTSAAAEKSKNKLRKRVQK 821
                 5544444444444444444333.........22223333355577888999999********9865499999999************************ PP

       Utp14 548 sskkkeaakekkkkdeeidlkkketlkekekt.lkkkk.......kedkeeesddde.....ee.eeevelpvalkqreliaeAFAgDDVva 625
                 + ++ke+a++    ++++d++ ++ ++  +++  +k+        +                 + + +++  +a++qr+l+a AFAgD+Vv+
  CDO73417.1 822 RLDEKEKAQD----EATVDISLSTVMTLGDAApAPKAGqsspaaaA-------KXXXxxxxrGKgKGKANGVKAFEQRDLVALAFAGDNVVQ 902
                 9997776655....99999999999888884444444334443321.......1111222222233344499******************97 PP

  == domain 3  score: 206.4 bits;  conditional E-value: 5e-65
       Utp14  623 VvaeFekEKkevveeedpkevdktLPGWGsWaGegvkkrkkkkrkflkkvegvkkkkRkDaklknVIInEkrdkkaakylvsqLPfpFeskeqYErs 719 
                  V+++F++ Kk+++++++pke+d+tLPGWGsW+G g+kk+++k++ ++kkv+gv+++ R D+k+ +VII+E+rdkkaaky+v++LP+p++s++q+Ers
  CDO73417.1  921 VHQDFAEAKKREIQADAPKEIDTTLPGWGSWGGIGTKKAPPKPH-LVKKVAGVDPTTRADYKKAHVIISERRDKKAAKYQVKDLPHPYTSRAQFERS 1016
                  99****************************************76.9*******9999**************************************** PP

       Utp14  720 lrlPlGpeWntketfqkltkPrVvvkqGavIkPlkk 755 
                  +++PlG eWnt+  fq++t P+Vv+k+G+ I+Pl+k
  CDO73417.1 1017 MEVPLGTEWNTRLGFQRATLPKVVTKMGTLINPLEK 1052
                  **********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2288  (0.127614); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.54u 0.33s 00:00:01.87 Elapsed: 00:00:00.56
# Mc/sec: 5710.95
//
Query:       CDO73418.1  [L=595]
Description: hypothetical protein BN946_scf185013.g52 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-90  304.0  17.5    1.9e-51  175.2   6.7    2.4  3  Nramp          Natural resistance-associated macrophage prote
  ------ inclusion threshold ------
       0.14   11.2   0.0        2.4    7.1   0.0    2.1  2  Pannexin_like  Pannexin-like TM region of LRRC8


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2   6.7   2.1e-55   1.9e-51       1     211 [.      63     288 ..      63     296 .. 0.90
   2 !  143.0   2.9   1.2e-45   1.1e-41     197     353 ..     349     507 ..     330     511 .. 0.91
   3 ?   -4.7   1.7      0.98   8.8e+03      58      72 ..     573     587 ..     567     593 .. 0.49

  Alignments for each domain:
  == domain 1  score: 175.2 bits;  conditional E-value: 2.1e-55
       Nramp   1 iatdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerl..........pkkvsillwilaelaiiatdlaeviGaAialnllf.g 88 
                 +  dlqaG++fGykLl v+ll+ ++ai++q+++ rLG vTg++la+ +r  l          ++ + + l++lae+aii tdlae++G+Aial llf  
  CDO73418.1  63 WGVDLQAGSEFGYKLLFVVLLAGIFAIVMQSMASRLGCVTGMDLASHCRLLLynrpkhtklwRWLALYPLYALAEIAIISTDLAELLGSAIALCLLFpS 161
                 66799********************************************9999999997776666677799**************************99 PP

       Nramp  89 ipllvgvlitavlvllllfle....kggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpg..keslllavgilGatvmphnlflhss 181
                 +pl++gvl+ta +vllll+l      + +r +E +i++lv++++++ ++ +  ++++wg+++ g++ Ps     +++l++ +gi+Gatvmph lfl s+
  CDO73418.1 162 LPLWAGVLLTASDVLLLLALRdpmaGRPVRLFELFIAILVFIVLICMAIIISRARVHWGDAFFGFI-PSHTVirSDALYTSIGIIGATVMPHSLFLGSA 259
                 *******************976532445************************************99.*999999************************* PP

       Nramp 182 lvqerkitidrseke.ealkyeriDtiiali 211
                 l  + +++++   ++ +++  +++D++++ +
  CDO73418.1 260 LATQDRVSQPP--SRgKDVALTTLDSTLSSS 288
                 99877744433..33357********99876 PP

  == domain 2  score: 143.0 bits;  conditional E-value: 1.2e-45
       Nramp 197 ealkyeriDtiial.ivaflinlailivaAavlysggkdv...esledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglrisl 291
                 ++l +  +D++i+l  +a +in++ili++ av+y+g + +   +sl+da ++L+ ++G k a++lFa++Lla+G+sS+i++tlagq+v egf+++++s+
  CDO73418.1 349 KHLYHGIVDMVISLlGLAVVINSMILILSSAVFYHGDTGTeipASLFDAFDLLKGIVG-KPAAILFALALLASGQSSSIIATLAGQIVSEGFIRWHLSP 446
                 45677789999*9989******************6665444469**************.7*************************************** PP

       Nramp 292 wlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMGe 353
                   rrl+tr++ +vp l+v++++g +++  +llv+sqv+ls++lPf+++pl++lts+k++MG 
  CDO73418.1 447 VMRRLFTRCIGLVPSLVVAAAAGRSGV-DTLLVASQVILSIVLPFIVFPLVWLTSNKTIMGV 507
                 ***************************.********************************96 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 0.98
       Nramp  58 illwilaelaiiatd 72 
                 +l+w+++++a++ + 
  CDO73418.1 573 YLIWLVVVVANVYAI 587
                 344444444444433 PP

>> Pannexin_like  Pannexin-like TM region of LRRC8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.013   1.2e+02      31      56 ..      77     102 ..      73     123 .. 0.84
   2 ?    7.1   0.0   0.00027       2.4     102     147 ..     338     383 ..     255     390 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.013
  Pannexin_like  31 lsvvmllvavlagtlqlskdkvvClP 56 
                    l +v+ll +++a  +q + +++ C+ 
     CDO73418.1  77 LLFVVLLAGIFAIVMQSMASRLGCVT 102
                    7899*******************986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00027
  Pannexin_like 102 nLdlqqYvfinqvCyekalpwyskyfpylvllhtlvllvssnfWfk 147
                    + + + Y+f+ +  y+  + +    +   v++++++l++ss+ +++
     CDO73418.1 338 DHENRPYSFVRKHLYHGIVDMVISLLGLAVVINSMILILSSAVFYH 383
                    456678**********************************997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4036.17
//
Query:       CDO73419.1  [L=402]
Description: hypothetical protein BN946_scf185013.g53 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2713.61
//
Query:       CDO73420.1  [L=566]
Description: hypothetical protein BN946_scf185013.g54 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.4   8.4      0.033   14.1   5.9    2.4  2  PHD       PHD-finger
      0.085   12.1   0.1       0.15   11.3   0.1    1.3  1  DUF2310   Zn-ribbon-containing, possibly nucleic-acid-binding


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.9   3.7e-06     0.033       1      38 [.     133     170 ..     133     188 .. 0.76
   2 ?    0.9   0.0     0.048   4.3e+02      42      51 ..     223     232 ..     212     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-06
                 SBTTTTSTTSTTSCEEEET..TTS.CEEETTTSSSTHSHHS CS
         PHD   1 rCavCkkksdeeeelvqCd..gCk.rwfHqkClkpplesee 38 
                 +C +C++     +e++ Cd  +C+ +wfH +C+++++ +e+
  CDO73420.1 133 YC-FCDG--VSYGEMIACDdeECEkEWFHIACVGLTVVPES 170
                 69.9*99..679******8446*636*******99876544 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.048
                 STBSSTTTHT CS
         PHD  42 gewlCekCke 51 
                 + + C+kC++
  CDO73420.1 223 SLFHCPKCDK 232
                 4789999986 PP

>> DUF2310  Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.7e-05      0.15     220     243 ..     226     249 ..     216     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
     DUF2310 220 kCPscggeWklkeplhdlfdfkCd 243
                 +CP+c++ W++++p+ + +  kC+
  CDO73420.1 226 HCPKCDKSWAMATPIRNHIFLKCE 249
                 8**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3985.17
//
Query:       CDO73421.1  [L=184]
Description: hypothetical protein BN946_scf185013.g55 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-08   33.8   0.0    4.8e-08   33.5   0.0    1.1  1  ING       Inhibitor of growth proteins N-terminal histone-bin


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.7e-12   4.8e-08       2      96 ..      25     122 ..      24     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.7e-12
                 HHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TS..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING   2 LedyldsvenLPlelqrnltelreiDakvqellkeidskiekfl...kngslqknekeeelsriqeelkeaqelldeKiqlaqqaldlvdkhlrrLdq 96 
                 L++y++ ++++P++l+r +  lre+Da +++ +  +  ki++++   ++++ +++ +   l++i +e  +++  +++ i +a +a+d ++ h  +L++
  CDO73421.1  25 LSEYTHTLDSVPADLSRSFGDLRELDAVLSSSISLLTAKINELIvmiETKTGSNDDRLFLLTEIADEAARLKLGGEDQIRVACHAADGLRAHKAHLKA 122
                 89******************************************987666666666677777******************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1292.67
//
Query:       CDO73422.1  [L=184]
Description: hypothetical protein BN946_scf185013.g56 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-14   54.2   0.2    1.8e-14   53.6   0.2    1.3  1  DnaJ           DnaJ domain
    1.2e-13   50.6   0.2    1.9e-13   49.9   0.2    1.3  1  zf-CSL         CSL zinc finger
  ------ inclusion threshold ------
       0.17   11.8   0.1       0.33   10.9   0.1    1.5  1  zinc_ribbon_4  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   3.1e-18   1.8e-14       1      63 []      38     101 ..      38     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 3.1e-18
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS.CCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn.pkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 dyYe+L vs++as+++Ik+aY++  l yHPDk  +++++ +     +++A+++L +pe Rk+YD
  CDO73422.1  38 DYYELLAVSPTASQADIKAAYHRALLLYHPDKRdSGSTTPTIDIGLLKQAFNTLYTPELRKDYD 101
                 8******************************88244448888999******************9 PP

>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.2   3.1e-17   1.9e-13       2      52 ..     118     166 ..     117     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 3.1e-17
                 EEEGGGSEEET..TTTEEEEEETTSSEEEEEHHHHHTT....--EEEETTSSE CS
      zf-CSL   2 eveledfefde..eeesyyypCRCgdeFelteedleegaegaevvvqCssCSL 52 
                 +v+le+fe  +  e ++++ypCRCg+++++te+ l  g    + +v+C+sCS 
  CDO73422.1 118 VVSLEEFEERDgpEGAIWVYPCRCGGQYVVTEAMLDAG----QHMVGCGSCSE 166
                 58999999966446668*********************....**********6 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.6e-05      0.33       7      32 ..     140     165 ..     139     169 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
  zinc_ribbon_4   7 sCkakyeiddeklpakgvkvrCskCg 32 
                    +C+ +y + +++l a+  +v C  C+
     CDO73422.1 140 RCGGQYVVTEAMLDAGQHMVGCGSCS 165
                    7************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 1239.43
//
Query:       CDO73423.1  [L=423]
Description: hypothetical protein BN946_scf185013.g57 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2810.85
//
Query:       CDO73424.1  [L=101]
Description: hypothetical protein BN946_scf185013.g58 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.03   14.7   0.0      0.041   14.2   0.0    1.2  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.3e-06     0.041      60      82 ..       2      24 ..       1      25 [. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-06
                 SSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind 60 ttklylrdltaidpawLllfagq 82
                 t+kl+lrd t ++ + Lllf+g 
   CDO73424.1  2 TSKLFLRDATEVPVYALLLFGGP 24
                 99******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 733.96
//
Query:       CDO73425.1  [L=1228]
Description: hypothetical protein BN946_scf185013.g59 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-17   64.0   0.3    1.3e-17   64.0   0.3    1.9  2  HA2         Helicase associated domain (HA2)
    2.8e-10   40.5   0.1    6.8e-10   39.3   0.1    1.7  1  Helicase_C  Helicase conserved C-terminal domain
    8.9e-06   25.6   0.0      2e-05   24.5   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.03   14.6   0.0      0.077   13.3   0.0    1.7  1  AAA_22      AAA domain
      0.079   12.0   0.0        0.2   10.7   0.0    1.6  1  T2SSE       Type II/IV secretion system protein
      0.085   12.6   0.0       0.22   11.2   0.0    1.7  1  AAA_30      AAA domain
          3    7.3   4.7         24    4.4   1.1    2.5  2  GETHR       GETHR pentapeptide repeat (5 copies)


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       5.5   1.4e+04      66      86 ..     151     168 ..     137     181 .. 0.47
   2 !   64.0   0.3   5.1e-21   1.3e-17       1     104 [.    1001    1085 ..    1001    1110 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.5
         HA2  66 eeneeekeeeeeeeekakkkr 86 
                   ++ ++++e+   +++k+++
  CDO73425.1 151 ARKAVDERQEK---AAKKAET 168
                 33333333322...2222222 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 5.1e-21
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrkla 97  
                  Al  L +l A  ++g+lT+lGr+m++lP++ rlakmL++++ +  +cl +++t++A+ls + +f+++ e+++e ++               ar+k+a
  CDO73425.1 1001 ALAILEELAATGPDGELTALGRHMSMLPMDLRLAKMLILGTVF--RCLGPILTVAACLSSKPLFVSPMEKREEASQ---------------ARAKFA 1080
                  78899***********************************666..***********************76544433...............333333 PP

         HA2   98 hkdaegD 104 
                   ++  +D
  CDO73425.1 1081 TAN--SD 1085
                  333..44 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   2.7e-13   6.8e-10       9     110 ..     820     938 ..     811     939 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.7e-13
                 HHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH....... CS
  Helicase_C   9 llkleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv....... 97 
                 ++++ ++ g ilif+  ++++ + ++ l+     + k+++lh++l+++e++ +++   +   +++++t+vae++++i+++ +Vi+ +  +++       
  CDO73425.1 820 IMSTAKKVGGILIFLSGVQEIRQcIEKLR--GipDAKILPLHANLSSDEQRLVFAPT-S-GWKIVVSTNVAETSVTIDDIIYVIDGGKVKEThydadag 914
                 3466788999*********9975666663..2559*********************9.4.468*********************988887777788888 PP

                 ...........HHHHHHHTTSSST CS
  Helicase_C  98 ...........tsyiqriGRtgRa 110
                            + + qr+GR+gR 
  CDO73425.1 915 ltklteqwitrAAARQRRGRAGRT 938
                 89999999999************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   7.7e-09     2e-05       5     172 ..     557     733 ..     553     735 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 7.7e-09
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvg 103
                 ++ ++li +++ v+v +eTG GKT+     vl+ ++ + + ++  +++  P r  a  ++ +++    + d +v   i g++++        +++i++ 
  CDO73425.1 557 QAFLDLIRSNRCVIVVGETGCGKTTQLPQFVLDDLILSGHGSRASIIVTQPRRLSALAVAARVSAERVE-DGSVGYAIRGDSRQG------PRTKILFC 648
                 566789999*****************999999988876677777999999***9999999999655443.345666677777632......346789** PP

                 EHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT.................SEEEEEESSBSHH CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxx RF
        DEAD 104 tpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq.................rqvivlSATlpkd 172
                 t+g +++ l s  k  l++v+ +++DE+       +++   +i++ ++ + ++ + +                  +vi++SAT++++
  CDO73425.1 649 TTGVVLRRLgSGDK--LDDVTHVIVDEVGHPPALARENSTLTIVRMTDAQVHERSVDgdflllelrellkthrkLKVILMSATINHE 733
                 ***99997736555..************9999999999999999999766666554489***********996656*******9855 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05     0.077       4      29 ..     565     590 ..     563     703 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 + ++++v+Ge+G+GKTt l +++  +
  CDO73425.1 565 SNRCVIVVGETGCGKTTQLPQFVLDD 590
                 679**************998877655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.7e-05       0.2     105     146 ..     537     583 ..     497     593 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.7e-05
       T2SSE 105 lddlgaeealk......ekiaevlrkavrerglilvsGgTgsGKttll 146
                  d+++++ + +      ++ +++l   +r++  ++v G Tg GKtt l
  CDO73425.1 537 KDEYAKMLSARtrlpayAARQAFLD-LIRSNRCVIVVGETGCGKTTQL 583
                 4444444433355555433333443.44777899999*********98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.5e-05      0.22       8      99 ..     557     676 ..     554     698 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.5e-05
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkal..reaweaa.g..........grviglAptgkaAkv.Lae...............elgieastiakll 77 
                 +a+  l+ s++ +++++G  G GKtt l +    +++ +  g          +r+ +lA  ++++++ +++                +           
  CDO73425.1 557 QAFLDLIRSNR-CVIVVGETGCGKTTQLPQFvlDDLILSGhGsrasiivtqpRRLSALAVAARVSAErVEDgsvgyairgdsrqgpRT----------- 643
                 56667788885.****************987445666555468888888888777788877776544366443322222222222233........... PP

      AAA_30  78 krlk..............grarlepgtllivDEagm 99 
                    k              +  +l++ t +ivDE+g 
  CDO73425.1 644 ---KilfcttgvvlrrlgSGDKLDDVTHVIVDEVGH 676
                 ...2444444555555556678999999****9986 PP

>> GETHR  GETHR pentapeptide repeat (5 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.017        43       2      10 ..     167     175 ..     166     175 .. 0.72
   2 ?    4.4   1.1    0.0095        24      16      23 ..     573     580 ..     571     582 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
       GETHR   2 ETvRGETvR 10 
                 ET RGE+ R
  CDO73425.1 167 ETSRGEASR 175
                 777888766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0095
       GETHR  16 GEThRGeT 23 
                 GET +G+T
  CDO73425.1 573 GETGCGKT 580
                 99999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.44
# Mc/sec: 8304.43
//
Query:       CDO73426.1  [L=1166]
Description: hypothetical protein BN946_scf185013.g60 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-25   88.1   1.0    7.9e-25   87.2   0.1    2.0  1  HA2          Helicase associated domain (HA2)
    2.8e-23   82.1   0.0    5.6e-23   81.1   0.0    1.5  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    2.4e-13   50.4   0.0    7.3e-13   48.8   0.0    1.9  1  Helicase_C   Helicase conserved C-terminal domain
    1.3e-06   28.6   0.2      3e-06   27.5   0.2    1.6  1  S1           S1 RNA binding domain
    2.8e-05   24.0   0.0    6.1e-05   22.9   0.0    1.6  1  DEAD         DEAD/DEAH box helicase
    8.9e-05   22.8   0.0    0.00025   21.3   0.0    1.8  1  AAA_22       AAA domain
    0.00034   19.8   0.0    0.00089   18.4   0.0    1.6  1  T2SSE        Type II/IV secretion system protein
    0.00099   18.9   0.0      0.002   17.9   0.0    1.4  1  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.016   15.6   0.1       0.03   14.6   0.1    1.4  1  AAA_19       AAA domain
      0.017   14.4   0.0      0.039   13.2   0.0    1.6  1  DUF2075      Uncharacterized conserved protein (DUF2075)
      0.036   14.6   1.3       0.75   10.3   0.1    3.1  2  ABC_tran     ABC transporter
       0.16   12.0   0.1        1.2    9.2   0.1    2.2  1  AAA_14       AAA domain
       0.17   11.5   0.4       0.37   10.4   0.4    1.6  1  SRP54        SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.1   5.7e-28   7.9e-25       1     108 []     896     984 ..     896     984 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 5.7e-28
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 Ale L+al+ALd+eg lT lGrkma++P++p lakmL+a++el  gc +e+++ivA+lsv+++f ++++++ + +        +k+++       + ++
  CDO73426.1 896 ALESLYALSALDDEGLLTRLGRKMADFPMEPALAKMLIASVEL--GCSEEILSIVAMLSVQSVFYRPKDKQGQAD--------AKKAK-------FHQP 977
                 899*************************************777..**********************97654322........23333.......3334 PP

         HA2 100 daegDhltl 108
                 +  gDhltl
  CDO73426.1 978 E--GDHLTL 984
                 4..999997 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0     4e-26   5.6e-23       1      82 [.    1042    1118 ..    1042    1119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 4e-26
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82  
                   +r+++++G++ + a+kdp++  ykt+ ++t+v+ihpsS+l++     +pew +y+el+ tt+ y++++tai+p wL+++a+q
   CDO73426.1 1042 VRKAICSGYFRNAAKKDPQEG-YKTLVEGTPVYIHPSSALFN----RNPEWCIYHELILTTREYCHNVTAIEPKWLVEVAPQ 1118
                   69**************99997.****99*************8....*********************************997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   5.3e-16   7.3e-13      10     111 .]     706     834 ..     695     834 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.3e-16
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH.. CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekk........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv.. 97 
                 ++l+e  g+il+f++ +++++  ++++ e+         ++ ++++++ lp++ + +++e    g ++v++at+vae++++ip++ +Vi+ ++ ++   
  CDO73426.1 706 IHLSEPPGDILLFLTGQEEIDTaCEIMYERMkalgpkvpELIILPIYSALPSEVQSRVFEPTPPGARKVVVATNVAETSLTIPGIYYVIDPGFSKQNay 804
                 268999************9998977775555567777889*****************************************************944336 PP

                 ................HHHHHHHTTSSSTT CS
  Helicase_C  98 ................tsyiqriGRtgRag 111
                                 +++ qr+GR+gR g
  CDO73426.1 805 dprlgmdslvvmpisqAQARQRAGRAGRTG 834
                 7799999999******************86 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   2.2e-09     3e-06       7      65 ..     209     270 ..     206     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.2e-09
                 EEEEEEEEEETTEEEEEET...TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEET CS
          S1   7 vveGeVtsvtkgGafVelg...ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdk 65 
                 ++ G V  + ++GafV+l+   + veg+v++s++ + ar    ++ l+ G+ vkvkv  v  
  CDO73426.1 209 IYNGRVNGLKEFGAFVQLEgvvGRVEGMVHVSNIQQGARANAASDLLSRGQSVKVKVMSVAG 270
                 789***************999999*********************************88754 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.4e-08   6.1e-05       9     172 ..     515     663 ..     500     667 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.4e-08
                 HHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCSEEEEEHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
        DEAD   9 plilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvdivvgtpg 106
                 ++i + + ++v ++TGsGKT+ +   + ++ +     ++ k+ +  P r  a  +++++ +      +r+   +g   ++   ++    +++i ++t g
  CDO73426.1 515 QAIREHQVLIVVGDTGSGKTTQMTQYLAEEGFA----DKGKIGCTQPRRVAAMSVAKRVAEEVG---CRLGQEVG---YTIRFEDCTsPETRIKYMTDG 603
                 5566778889***********988888876654....455777***********9999987777...44443334...4445555531359******** PP

                 HHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 107 rlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 +l++ +  +    +sq +++ lDEa++       d +  +l++  +   d  l+  +iv SATl  ++
  CDO73426.1 604 MLQREClIDPD--VSQYSVIMLDEAHERTIA--TDVLFGLLKKAIKRRPD--LK--LIVTSATLDaEK 663
                 ****6634444..*************98886..66666666666333344..44..********8555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.8e-07   0.00025       4     110 ..     519     638 ..     516     672 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.8e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.............erlsseell.ealeqalra 88 
                 ++++l+v+G +G+GKTt + ++l +         ++++ + +t p      ++++++++++g +l               ++ + + +   +l++ +  
  CDO73426.1 519 EHQVLIVVGDTGSGKTTQMTQYLAEEGF------ADKGKIGCTQPRRVAAMSVAKRVAEEVGCRLGQevgytirfedctsPETRIKYMTdGMLQRECLI 611
                 6789********************9742......5888888888888899999999999999888889999****988887778888888888888887 PP

      AAA_22  89 rav...ielliiDEaqhlr..seeale 110
                   +    +++++DEa+  +  ++ ++ 
  CDO73426.1 612 DPDvsqYSVIMLDEAHERTiaTDVLFG 638
                 7779999*********84333344444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.4e-07   0.00089     116     151 ..     507     542 ..     461     550 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.4e-07
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallk 151
                  k++e l +a+re+++++v G TgsGKtt +   l+
  CDO73426.1 507 YKLREPLLQAIREHQVLIVVGDTGSGKTTQMTQYLA 542
                 567788999********************9876665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.5e-06     0.002      17     112 ..     519     643 ..     511     654 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
      AAA_30  17 gdrvavltGpAGtGKttalkal..reaweaag.......grviglAptgkaAkvLaeelgieastiakllkrlk...................grarle 87 
                 +++v +++G  G+GKtt ++++  +e ++++g       +rv++++  +++A++++  lg e   + ++ + +                    +  +++
  CDO73426.1 519 EHQVLIVVGDTGSGKTTQMTQYlaEEGFADKGkigctqpRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSpetrikymtdgmlqrecliD-PDVS 616
                 4569***************99876778888889*********************9977776555444555444455555566666677777762.3566 PP

      AAA_30  88 pgtllivDEag..mvdtkqlaallkaa 112
                 + ++++ DEa    ++t+ l  llk+a
  CDO73426.1 617 QYSVIMLDEAHerTIATDVLFGLLKKA 643
                 778888888852234566666666555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.2e-05      0.03       8     126 ..     518     644 ..     513     654 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhival.....lvelggvkpeeillvaftgrAakelrerlaalgae.atTiHrlal.ldfddlltealelle.eaeeek 98 
                  +++vl+v++  G+GKT+ +++ +a+       ++g  +p++++++++++r a+e+  rl   g+e  +Ti         ++++ ++ ++l+ e   + 
  CDO73426.1 518 REHQVLIVVGDTGSGKTTQMTQYLAEegfadKGKIGCTQPRRVAAMSVAKRVAEEVGCRL---GQEvGYTIRFEDCtSPETRIKYMTDGMLQrECLIDP 613
                 67899************9988877651211122334445588888888888888887777...444556665221112222333334444445444566 PP

      AAA_19  99 klqeee.llivDEfqd..vd.elqyrLlkall 126
                 ++ +++ +++ DE+ +  +  ++ + Llk+  
  CDO73426.1 614 DV-SQYsVIMLDEAHErtIAtDVLFGLLKKAI 644
                 77.55558889988762233455556666555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.8e-05     0.039       2      98 ..     521     627 ..     520     642 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekkeepked 90 
                 +v++V G++G+GKt  + + lae            + r+++ +sv ++  + +  +l ++   + + e+ + +++ i+ ++ +   ++   + +  +  
  CDO73426.1 521 QVLIVVGDTGSGKTTQMTQYLAEEgfadkgkIGCTQPRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGmlqRECLIDPDVSQYS 619
                 799********************9877666555559999******************999977788899************99998888889999**** PP

     DUF2075  91 vvivDEAh 98 
                 v+  DEAh
  CDO73426.1 620 VIMLDEAH 627
                 ******** PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       3.1   4.3e+03     101     122 ..     247     268 ..     224     277 .. 0.74
   2 ?   10.3   0.1   0.00055      0.75       8      44 ..     517     554 ..     513     628 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.1
                 GESTTSGGS-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 101 vvksspssLSgGqkqrvalara 122
                 +++     LS Gq ++v+++ +
  CDO73426.1 247 RANAASDLLSRGQSVKVKVMSV 268
                 444455889*******998765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00055
                 EETTSEEEEEESTTSSHHH.HHHHHTTSS--SEEEEEE CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKSt.LlkllagllkpteGeill 44 
                 ++e +++ +vG++G+GK+t + + la++   ++G+i +
  CDO73426.1 517 IREHQVLIVVGDTGSGKTTqMTQYLAEEGFADKGKIGC 554
                 678899************94456777777778888843 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00084       1.2       2      99 ..     520     656 ..     519     668 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00084
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.........vkkesilyinldderd.................kkladpekllelilek.lke.........ek 64 
                 +++l+++G   +GKTt + q++ e+          ++++++  +++ +                    ++ + pe+ ++++ +  l +         ++
  CDO73426.1 520 HQVLIVVGDTGSGKTTQMTQYLAEEGfadkgkigcTQPRRVAAMSVAKRVAeevgcrlgqevgytirfEDCTSPETRIKYMTDGmL-QreclidpdvSQ 617
                 67999***************999988888888888788888888877755567777777777755444222233333333333322.134566678888 PP

      AAA_14  65 ktylflDEiqevpewekalkslvd....egknldvivtG 99 
                  ++++lDE++e + + ++l +l++    ++++l++ivt 
  CDO73426.1 618 YSVIMLDEAHERTIATDVLFGLLKkaikRRPDLKLIVTS 656
                 888999999999666666555544222266888888886 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00027      0.37       2      59 ..     521     577 ..     520     666 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                 EEEEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEESTSSTTHHHHHHHHHHHTTEEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke..gkkvllvaaDtfRaaAveQLktlaeklgvpv 59 
                 +v+++vG +G+GKTt ++   ++l +e  + k  + ++   R+aA+   k +ae++g ++
  CDO73426.1 521 QVLIVVGDTGSGKTTQMT---QYLAEEgfADKGKIGCTQPRRVAAMSVAKRVAEEVGCRL 577
                 6899***********865...566666566788899999999999999999999988664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 7544.38
//
Query:       CDO73427.1  [L=253]
Description: hypothetical protein BN946_scf185013.g61 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-12   47.1   0.0    5.2e-12   46.6   0.0    1.2  1  DIOX_N    non-haem dioxygenase in morphine synthesis N-termin


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   2.9e-16   5.2e-12       5     102 ..      23     120 ..      20     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.9e-16
      DIOX_N   5 dlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp..sfrGysrlgeektdg.kkldwkesfdlgtelp 100
                 d   l  ++ + +++++l  A++++Gf y+ nhgv+ e ++++f++ +e  alP++eK+k+++ +     Gy++ g+  td  + +d  e+++++++ +
  CDO73427.1  23 DYHLL--KAGDVDEIAKLWLAATHTGFWYLRNHGVECE-ANAMFDLGAETLALPLSEKMKYEQGDngDSFGYKARGTIATDLnGTRDTVEFLNIAQDDA 118
                 55544..5566789999******************987.9*********************66544599*****9999998888**********99965 PP

      DIOX_N 101 ed 102
                  +
  CDO73427.1 119 LS 120
                 44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1837.48
//
Query:       CDO73428.1  [L=644]
Description: hypothetical protein BN946_scf185013.g62 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4707.24
//
Query:       CDO73429.1  [L=915]
Description: hypothetical protein BN946_scf185013.g63 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-108  361.8   0.0   7.1e-108  361.4   0.0    1.1  1  Adaptin_N       Adaptin N terminal region
    3.4e-11   43.5   1.6    6.1e-07   29.6   0.0    3.4  4  Cnd1            non-SMC mitotic condensation complex subunit 
    1.9e-07   30.7   2.1       0.64   10.4   0.0    6.7  6  HEAT            HEAT repeat
    3.6e-06   27.3  13.5     0.0016   18.8   0.1    6.4  8  HEAT_2          HEAT repeats
    0.00021   21.4   2.6       0.11   12.7   0.0    3.4  3  RTP1_C1         Required for nuclear transport of RNA pol II 
     0.0056   17.2   9.6        0.1   13.1   0.1    6.0  7  HEAT_EZ         HEAT-like repeat
     0.0059   16.7   0.9        4.5    7.4   0.0    3.3  3  ParcG           Parkin co-regulated protein
  ------ inclusion threshold ------
      0.014   15.6  10.2        1.5    9.1   0.2    4.0  4  AP3D1           AP-3 complex subunit delta-1
       0.02   14.1   0.2        0.5    9.5   0.3    2.8  2  Cnd3            Nuclear condensing complex subunits, C-term d
      0.061   13.3   2.0        3.7    7.5   0.0    3.1  3  Nipped-B_C      Sister chromatid cohesion C-terminus
      0.066   13.3   0.0        8.5    6.6   0.0    3.6  3  Arm             Armadillo/beta-catenin-like repeat
      0.073   12.5   0.1       0.24   10.8   0.0    1.7  2  TAF1_subA       TAF RNA Polymerase I subunit A
      0.094   11.2   0.8        2.6    6.5   0.2    2.3  2  Proteasom_PSMB  Proteasome non-ATPase 26S subunit
       0.14   11.7   0.7        1.3    8.6   0.0    2.6  3  FANCI_S1        FANCI solenoid 1


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.4   0.0  5.6e-111  7.1e-108       2     520 ..      21     595 ..      20     597 .. 0.94

  Alignments for each domain:
  == domain 1  score: 361.4 bits;  conditional E-value: 5.6e-111
                 HHHCCHHHHHHCCSSS.-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHH CS
   Adaptin_N   2 ekriqqelaeilnsnk.dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglA 99 
                  k+i q + ei+n+ k +d e k+ av kl+yl++lG+d+s++ f+vv++++  ++ lK ++Yl++++++++++d+++L+tn l+kDl ++ +  +++A
  CDO73429.1  21 SKFIAQAVDEIRNEIKhKDMEIKAAAVLKLTYLHMLGYDMSWASFHVVEVMSAPRIHLKTIGYLAATQSFQQDTDVLMLTTNLLKKDLGSK-PEEVAVA 118
                 6899999********9889999******************************************************************765.66789** PP

                 HHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCH CS
   Adaptin_N 100 LrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrL 197
                 L++Ls i +pela+dlap++ ++l++++p +rk A+la++k + k+p++l++  ++++ ++l+d d gvv+a+v++l+e+  +n+r +l l+p+l++ L
  CDO73429.1 119 LNGLSHIVTPELARDLAPELIAMLNHSRPHIRKRAILALYKAIMKYPEILPQC-MSRLRDKLDDPDDGVVAATVNVLCELvHHNPRDYLPLAPQLFHLL 216
                 **************************************************996.********************************************* PP

                 HHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCC.....HCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCH CS
   Adaptin_N 198 cnllteldpwlqvkiiklltrlarqepeerskkellesllnllq.ssnnaVlletvnliv.....elapknelivlavnaLvrllsskdenlryvaLrt 290
                 +   t++++w+ +k+ikl+  l++ ep++   k+l + ++ l++ +s+ ++l+e+v++ +     +  + ++l+  +v++L  +l+++d+nl+y+aL +
  CDO73429.1 217 T---TSSNNWMLIKLIKLFGTLTPLEPRLV--KKLQPPITDLIStTSAISLLYECVRTCIiggmlQGHSGSSLARTCVTKLAGFLQDRDQNLKYIALLA 310
                 *...**************************..66**********99999*********9999966444555599************************* PP

                 HHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH..............................HHH CS
   Adaptin_N 291 llkivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded..............................fks 358
                 ++kiv ++p+ v   +d+++ +++ d+d+sir++aldl++++v++ N++ iv+ L++++ ++ + +                              ++ 
  CDO73429.1 311 MVKIVPTHPELVAeYQDMILSSVN-DEDISIRMRALDLVSAMVSRHNLQPIVQHLLSHLVKSETASlpsasqalsqlatptipaakpaispsqspvYRL 408
                 *************9**********.*********************************95554444777888888999999999999999********* PP

                 HHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG..........XXSHHHHHHHHHHHHHTT CS
   Adaptin_N 359 klvkaIgrlaekf....atdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek..........ieseearaaaiWllGeyg 443
                  l++ I  l+++     +td+ew+++vl++l   +   ++ ei +++ d+  +v   ++++++ +++ll++             +e++ aa+W++G  +
  CDO73429.1 409 TLAQRILALGSQDvydnVTDFEWYISVLVDLAYVARVNIGGEIRDQLVDITGRVRGARRYAVQYMLKLLTDesflhnapdsGGCPEVLWAAAWICGCPS 507
                 ************999********************************************************998766655555566************* PP

                 TTXTT...........HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHH...XXSHHHHHHHHHHHHHH CS
   Adaptin_N 444 elvsn.......te.sasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlslat...ssdlevrdRaveylqll 520
                 el++         + ++s+l   +  ++ ++s kv+ ++  +l++ ++ +    +q  + ++v++l++     d+ev++Ra e+lql+
  CDO73429.1 508 ELAEPqkllsylLQsRISSLPPDVVAVYLQASLKVFGSWAAELAESWDDDDLPRVQGTVNDIVERLSDfvtHPDIEVQERAAEMLQLF 595
                 **99999*****777********************************88888888887777777777777788*************98 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.32   4.1e+02      17      49 ..      22      56 ..      17      67 .. 0.86
   2 !   29.6   0.0   4.8e-10   6.1e-07       5     128 ..     117     237 ..     116     257 .. 0.89
   3 !    9.6   0.1    0.0007       0.9      17     105 ..     283     369 ..     266     391 .. 0.70
   4 ?   -3.8   0.0       9.2   1.2e+04     135     153 ..     567     585 ..     561     592 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.32
        Cnd1 17 nlveylvepLrkrLkDedpyVRktaaivvakL..i 49
                +++ + v+++r+ +k +d+ ++  a++ ++ L  +
  CDO73429.1 22 KFIAQAVDEIRNEIKHKDMEIKAAAVLKLTYLhmL 56
                7889999*******************999999533 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 4.8e-10
        Cnd1   5 lairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisk 103
                  a+  l+ i  p+l   l ++L + L+ + p++Rk a++++ k i +   +  + +s+l++ l+D+++ Vva ++++l+e+ + +++  + l p++++ 
  CDO73429.1 117 VALNGLSHIVTPELARDLAPELIAMLNHSRPHIRKRAILALYKAIMKYPEILPQCMSRLRDKLDDPDDGVVAATVNVLCELVHHNPRDYLPLAPQLFHL 215
                 6788899999*************************************9999999********************************************9 PP

        Cnd1 104 lsdalnecsewgqitilefLlsyip 128
                 l +   + ++w  i+ +++  + +p
  CDO73429.1 216 LTT---SSNNWMLIKLIKLFGTLTP 237
                 995...5777777777776655555 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0007
        Cnd1  17 nlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiiskls 105
                 +l    v++L   L+D+d+  +  a++++ k+   ++++v e +  +++++ ++De+ +++  al + + + ++   ++  ++++++s+l+
  CDO73429.1 283 SLARTCVTKLAGFLQDRDQNLKYIALLAMVKIvpTHPELVAEYQ--DMILSSVNDEDISIRMRALDLVSAMVSRH--NLQPIVQHLLSHLV 369
                 56667788888889999999999999999999666666666655..88888999999999888888888888775..33444444555555 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 9.2
        Cnd1 135 eslveklcprlqhansavv 153
                 +++ve+l + ++h   +v+
  CDO73429.1 567 NDIVERLSDFVTHPDIEVQ 585
                 4555555555555544444 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4   1.8e+03      10      24 ..      36      50 ..      31      53 .. 0.83
   2 !   10.4   0.0    0.0005      0.64       3      25 ..     136     158 ..     134     160 .. 0.91
   3 ?    3.3   0.0     0.095   1.2e+02       3      28 ..     169     198 ..     167     200 .. 0.74
   4 ?   -0.4   0.0       1.5   1.9e+03       7      29 ..     294     316 ..     290     318 .. 0.86
   5 !    7.5   0.0    0.0045       5.8       4      29 ..     328     353 ..     326     355 .. 0.90
   6 ?   -0.0   0.0       1.2   1.5e+03       8      24 ..     576     592 ..     568     596 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
                T-SSHHHHHHHHHHH CS
        HEAT 10 sDpspeVReaAakaL 24
                +++++e+ +aA++ L
  CDO73429.1 36 KHKDMEIKAAAVLKL 50
                799********9987 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0005
                 HHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLg 25 
                 P l+ +l+++ p++R+ A++aL 
  CDO73429.1 136 PELIAMLNHSRPHIRKRAILALY 158
                 889******************96 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.095
                 HHHHHHHT-....SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsD....pspeVReaAakaLgala 28 
                 P +++ l+D    p+  V +a+++ L++l+
  CDO73429.1 169 PQCMSRLRDklddPDDGVVAATVNVLCELV 198
                 5555555555555*************9997 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.5
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                   l+D + +  + A++a++++++
  CDO73429.1 294 GFLQDRDQNLKYIALLAMVKIVP 316
                 5689**************99987 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0045
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 ++l+  +D++ ++R+ A+  + a+++
  CDO73429.1 328 MILSSVNDEDISIRMRALDLVSAMVS 353
                 689999**************999987 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 1.2
                 HHT-SSHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaL 24 
                   ++p+ eV e Aa+ L
  CDO73429.1 576 FVTHPDIEVQERAAEML 592
                 3456*********9865 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.94   1.2e+03      31      55 ..      26      50 ..       6      58 .. 0.75
   2 !   18.8   0.1   1.3e-06    0.0016      19      81 ..     117     189 ..     101     195 .. 0.75
   3 !    7.4   0.1    0.0044       5.7       6      71 ..     294     364 ..     289     384 .. 0.76
   4 ?   -0.1   0.0         1   1.3e+03      20      66 ..     379     425 ..     361     428 .. 0.78
   5 ?   -2.1   0.0       4.1   5.3e+03      29      45 ..     466     482 ..     450     486 .. 0.69
   6 ?   -2.0   0.0       3.9     5e+03      13      37 ..     492     520 ..     488     532 .. 0.69
   7 ?    3.6   0.0      0.07        89      31      56 ..     568     593 ..     545     607 .. 0.81
   8 ?   -2.3   0.3       4.6   5.9e+03      49      68 ..     728     753 ..     720     769 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.94
      HEAT_2 31 ealpaLvellededpavRraaaeaL 55
                +a++ +++ ++++d+++ +aa+  L
  CDO73429.1 26 QAVDEIRNEIKHKDMEIKAAAVLKL 50
                7899999999999999999999766 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.3e-06
      HEAT_2  19 aairaLgrignp....ealpaLvellededpavRraaaeaL..gaig....dpealpaLkellddddddvvRe 81 
                  a+  L  i +p    ++ p L+ +l+++ p++R+ a+ aL  + ++    +p+  + L++ ldd+dd vv +
  CDO73429.1 117 VALNGLSHIVTPelarDLAPELIAMLNHSRPHIRKRAILALykAIMKypeiLPQCMSRLRDKLDDPDDGVVAA 189
                 577777777777444466***********************543445444458889*******9998888754 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0044
      HEAT_2   6 qalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgaigdpealpaLkell 71 
                  +l +d d+++++ a+ a+ +i ++      e+++++++ ++ded  +R+ a +  +a+ +  +l+   + l
  CDO73429.1 294 GFL-QDRDQNLKYIALLAMVKIVPThpelvaEYQDMILSSVNDEDISIRMRALDLVSAMVSRHNLQPIVQHL 364
                 567.89999999999999998865545677788*********************999886544443333333 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1
      HEAT_2  20 airaLgrignpealpaLvell.ededpavRraaaeaLgaigdpealpa 66 
                 a +aL ++++p ++pa  +++  +++p  R + a+ + a+g++++++ 
  CDO73429.1 379 ASQALSQLATP-TIPAAKPAIsPSQSPVYRLTLAQRILALGSQDVYDN 425
                 67889999998.899999999558899999999999999988888775 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 4.1
      HEAT_2  29 npealpaLvellededp 45 
                  + a++++++ll+de+ 
  CDO73429.1 466 RRYAVQYMLKLLTDESF 482
                 44578888888888875 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 3.9
      HEAT_2  13 dpevrraairaLg...rignp.ealpaLv 37 
                 +pev +aa++  g   ++++p ++l +L+
  CDO73429.1 492 CPEVLWAAAWICGcpsELAEPqKLLSYLL 520
                 78888999988888764443325555554 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.07
      HEAT_2  31 ealpaLvellededpavRraaaeaLg 56 
                 ++++ L ++++++d +v++ aae L 
  CDO73429.1 568 DIVERLSDFVTHPDIEVQERAAEMLQ 593
                 67888888888889999999988885 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 4.6
      HEAT_2  49 raaaeaLgaig......dpealpaLk 68 
                   a  aL++ +      + + ++ L+
  CDO73429.1 728 GSASPALVETAeeraerERRKAERLE 753
                 44444444443111111233444444 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1   1.5e+03       3      24 ..      30      51 ..      17      73 .. 0.64
   2 !   12.7   0.0   8.7e-05      0.11       4      83 ..     138     213 ..     136     230 .. 0.88
   3 !    6.2   0.3    0.0088        11       9      83 ..     297     368 ..     288     388 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
     RTP1_C1  3 ealkdlqdpllpvrahglvlLr 24
                e+ ++++ + + ++a ++++L+
  CDO73429.1 30 EIRNEIKHKDMEIKAAAVLKLT 51
                3344445555555555555544 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.7e-05
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83 
                  ++ l+ + +++r ++++ L k i k      + +++ ++ l + L d+d+ v  + +++L++L++  p++ l+l  + +
  CDO73429.1 138 LIAMLNHSRPHIRKRAILALYKAIMKYP----EILPQCMSRLRDKLDDPDDGVVAATVNVLCELVHHNPRDYLPLAPQLF 213
                 678899********************96....78899*********************************9998766665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0088
     RTP1_C1   9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfp.eevlklLleey 83 
                 qd    ++  +l+ + k++ ++     + + +  +++l++++ded  + + a  +++a++++++ + ++++Ll++ 
  CDO73429.1 297 QDRDQNLKYIALLAMVKIVPTH----PELVAEYQDMILSSVNDEDISIRMRALDLVSAMVSRHNlQPIVQHLLSHL 368
                 5555555555555555555554....36666677777788888888888888888888887775245666666665 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1     8e-05       0.1      19      53 ..     128     158 ..     116     159 .. 0.82
   2 ?    1.2   0.0      0.45   5.7e+02      26      50 ..     168     192 ..     164     219 .. 0.85
   3 ?   -1.8   0.0       3.8   4.8e+03      30      51 ..     289     310 ..     282     314 .. 0.84
   4 ?   -3.0   0.0       8.7   1.1e+04      29      53 ..     329     349 ..     316     351 .. 0.57
   5 ?   -1.8   0.1       3.7   4.8e+03      20      42 ..     354     372 ..     338     386 .. 0.63
   6 ?   -0.3   0.0       1.3   1.7e+03      41      53 ..     492     504 ..     487     505 .. 0.88
   7 ?    2.1   0.0      0.22   2.8e+02      22      52 ..     562     592 ..     541     594 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8e-05
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 pel +    ++ p+L+a+Ln++ +++R+ A+ aL 
  CDO73429.1 128 PELAR----DLAPELIAMLNHSRPHIRKRAILALY 158
                 55555....999*******************9996 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.45
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAag 50 
                 +p+ +  L   L d++d V aa++ 
  CDO73429.1 168 LPQCMSRLRDKLDDPDDGVVAATVN 192
                 7888999999999999988888775 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.8
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAaga 51 
                 +  L+ +L+d +++ ++ A+ a
  CDO73429.1 289 VTKLAGFLQDRDQNLKYIALLA 310
                 6789999999999999999866 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 8.7
     HEAT_EZ  29 ilpaLlalLnddsd.eVRaaAagaLg 53 
                 il       n d+d ++R  A+   +
  CDO73429.1 329 ILSSV----N-DEDiSIRMRALDLVS 349
                 44433....4.555599999886655 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 3.7
     HEAT_EZ  20 el.lqplvpeilpaLlalLnddsd 42 
                 ++ lqp v+ +l  L+     +s 
  CDO73429.1 354 RHnLQPIVQHLLSHLV-----KSE 372
                 4448899999999998.....665 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 1.3
     HEAT_EZ  41 sdeVRaaAagaLg 53 
                 ++eV +aAa+ +g
  CDO73429.1 492 CPEVLWAAAWICG 504
                 799*******877 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.22
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 +q+ v +i+  L  + ++++ eV++ Aa  L
  CDO73429.1 562 VQGTVNDIVERLSDFVTHPDIEVQERAAEML 592
                 788999******************9999765 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.26   3.3e+02      64     107 ..       8      53 ..       3      61 .. 0.75
   2 !    7.4   0.0    0.0035       4.5      73     121 ..     163     211 ..     142     224 .. 0.81
   3 ?    4.2   0.1     0.031        40      70     130 ..     310     369 ..     269     384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.26
       ParcG  64 dllea..ageekilpvlpklilplkeaLntrdeeviesaLkvlqkl 107
                 dl++   a+++   + +++ +  +++ ++++d+e+ ++a+  l  l
  CDO73429.1   8 DLIRGlrANKKDESKFIAQAVDEIRNEIKHKDMEIKAAAVLKLTYL 53 
                 55554444556667899******************99887666555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0035
       ParcG  73 kilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpy 121
                 k  ++lp+ +  l+  L+  d+ v++++++vl +lv+ ++     L p 
  CDO73429.1 163 KYPEILPQCMSRLRDKLDDPDDGVVAATVNVLCELVHHNPRDYLPLAPQ 211
                 55679******************************99887655555555 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.031
       ParcG  70 geekilpvlpklilplkea.LntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvln 130
                 +  ki+p+ p+l+   +   L++ ++e i   +++l  +  +  + +++L p  ++lL +l 
  CDO73429.1 310 AMVKIVPTHPELVAEYQDMiLSSVNDEDISIRMRALDLV--SAMVSRHNLQPIVQHLLSHLV 369
                 457999999****99987537888999999999999555..344456789999999999887 PP

>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2    0.0012       1.5      77     116 ..     684     723 ..     645     736 .. 0.58
   2 ?    8.3   0.0     0.002       2.6       3      55 ..     742     789 ..     739     800 .. 0.78
   3 ?    2.0   0.0      0.17   2.1e+02     123     136 ..     815     827 ..     802     830 .. 0.80
   4 ?   -2.1   2.0       3.1     4e+03      89     105 ..     891     907 ..     877     915 .] 0.48

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
       AP3D1  77 kakkkakeekkkkkkkkkkkkkkkkkkkkkkeeessesee 116
                 ++++ a e kk kk kkk   k k++k+k k    + +e+
  CDO73429.1 684 RDENDAAEGKKAKKGKKKDVGKAKRSKGKAKAGDVDADED 723
                 2333334445555555555555555444444444433333 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.002
       AP3D1   3 eelerrReaRkleqenNPhYLkssatssskksassaqnseeveeipvaeldls 55 
                 +e err+ +R++     P+YL + +tss     + + +  +v+ ipv++ld  
  CDO73429.1 742 AERERRKAERLERLRDDPYYLIDDRTSS-----TMSVSALDVDAIPVVKLDDL 789
                 68899999***************99886.....44444567888888888754 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
       AP3D1 123 avnrttlemPegae 136
                 +++ +t+emPega 
  CDO73429.1 815 IID-KTGEMPEGAV 827
                 577.99******97 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.1
       AP3D1  89 kkkkkkkkkkkkkkkkk 105
                 +kkk+++  kk kk+ +
  CDO73429.1 891 AKKKGTSAGKKGKKRTQ 907
                 23333333333322222 PP

>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00039       0.5      32     182 ..     139     384 ..     122     396 .. 0.80
   2 ?   -1.6   0.0      0.97   1.2e+03      34      60 ..     576     602 ..     562     605 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
                 HHHHC-SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-CGGGGGGHH.......................... CS
        Cnd3  32 lpavrskeaairelglkcLglfclldkklakenlklflqalskgneelkiialkaifDllllhglevldkekkedsd.eeeees............... 114
                 + +++++ ++ir++++ +L    + + ++  ++++ +++ l   ++ + +  ++++++l+ + + ++l  + +  +  ++++++               
  CDO73429.1 139 IAMLNHSRPHIRKRAILALYKAIMKYPEILPQCMSRLRDKLDDPDDGVVAATVNVLCELVHHNPRDYLPLAPQLFHLlTTSSNNwmlikliklfgtltp 237
                 567778899999999999999999999999999999999999889999999999999999999999998888877777666666899999999999999 PP

                 .................................................HHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHHH--.....SHH....... CS
        Cnd3 115 .............................................essksllkllykaLdsednpelqaiaaeglcKLllagil.....tds....... 156
                                                              +  +++++ l+ +L++  +++l+ ia  ++ K++ +        + +       
  CDO73429.1 238 leprlvkklqppitdlisttsaisllyecvrtciiggmlqghsgsSLARTCVTKLAGFLQDR-DQNLKYIALLAMVKIVPTHPElvaeyQ-Dmilssvn 334
                 99999999999999999999999999999999999999999998877888888888888766.488888888888888876655555541.13444445 PP

                 ........................HHHHHHHHHHH-GGGTT-HHHHHHHH CS
        Cnd3 157 ........................elLsrLvllyFnpeteenqrLrQcLs 182
                                          +++ L+ +    et++ +   Q+Ls
  CDO73429.1 335 dedisirmraldlvsamvsrhnlqPIVQHLLSHLVKSETASLPSASQALS 384
                 55777777777777777777777559999999999999999888888887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.97
                 HHC-SSHHHHHHHHHHHHHHHTT-HHH CS
        Cnd3  34 avrskeaairelglkcLglfclldkkl 60 
                  v++ + +++e++ + L lf  +  +l
  CDO73429.1 576 FVTHPDIEVQERAAEMLQLFTFIRADL 602
                 69999***************9998776 PP

>> Nipped-B_C  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.79     1e+03     119     148 ..       6      35 ..       3      72 .. 0.70
   2 ?    7.5   0.0    0.0029       3.7      44      82 ..     133     171 ..     114     174 .. 0.86
   3 ?    3.1   0.1     0.061        78       4      42 ..     321     359 ..     319     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.79
                 HHHHHHHH--SHHHHHHHHHHHHHHH.HHT CS
  Nipped-B_C 119 lsslysllrsnkqsrrkflsslvklfdfes 148
                 l+ l++ lr nk+   kf+ + v  + +e+
  CDO73429.1   6 LQDLIRGLRANKKDESKFIAQAVDEIRNEI 35 
                 56778889999999999*999999886422 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0029
                 GTHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHT CS
  Nipped-B_C  44 qcvptLialetdpdesirsrAdkllqeleekyegflesk 82 
                    p Lia+   + ++ir+rA+  l ++  ky+++l + 
  CDO73429.1 133 DLAPELIAMLNHSRPHIRKRAILALYKAIMKYPEILPQC 171
                 46899****************************998765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.061
                 HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHT-S-G CS
  Nipped-B_C   4 vvqrYlkdilecalspdsqvrlaAlevvslilrqGLvhP 42 
                 +v  Y + il ++ ++d ++r+ Al++vs ++    ++P
  CDO73429.1 321 LVAEYQDMILSSVNDEDISIRMRALDLVSAMVSRHNLQP 359
                 5778999*********************99887655555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.21   2.7e+02      15      36 ..     136     157 ..     135     158 .. 0.91
   2 ?   -2.8   0.0       5.9   7.6e+03      15      39 ..     173     197 ..     169     199 .. 0.71
   3 ?    6.6   0.0    0.0067       8.5      13      33 ..     569     589 ..     565     592 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.21
                 HHHHHHTTTSSHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawAL 36 
                 p L+++L++  + +++ A  AL
  CDO73429.1 136 PELIAMLNHSRPHIRKRAILAL 157
                 78**************998877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.9
                 HHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsNL 39 
                  +L + L+++d++v+ + +  L+ L
  CDO73429.1 173 SRLRDKLDDPDDGVVAATVNVLCEL 197
                 5555557888999988888777766 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0067
                 HHHHHHHHTTTSSHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAa 33 
                 +v++L ++ +++d evqe Aa
  CDO73429.1 569 IVERLSDFVTHPDIEVQERAA 589
                 899****************98 PP

>> TAF1_subA  TAF RNA Polymerase I subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   1.7e+03      60     119 ..      99     165 ..      66     206 .. 0.55
   2 ?   10.8   0.0   0.00019      0.24     217     261 ..     294     336 ..     287     356 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
   TAF1_subA  60 erlknlgvknykki.slehalflllqgnieeakrnl......eelvsqeklikeplvnlykGLlsYq 119
                     +l++    k+  +  al  l++  + e  r+l        + s    +k +++ lyk++++Y 
  CDO73429.1  99 LTTNLLKKDLGSKPeEVAVALNGLSHIVTPELARDLapeliaMLNHSRPHIRKRAILALYKAIMKYP 165
                 4444333333333223444444444444444444443332221122233333344555555555544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00019
   TAF1_subA 217 qflkrnkaskkkliscvLkLhelvPsdPtlmlelekLlkkskkge 261
                  fl+ ++++  k i+  L + ++vP++P+l+ e++ ++ +s ++e
  CDO73429.1 294 GFLQDRDQNL-KYIA-LLAMVKIVPTHPELVAEYQDMILSSVNDE 336
                 5677776333.3333.466999*****************999855 PP

>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.027        35      57     108 ..     112     159 ..      71     203 .. 0.74
   2 ?    6.5   0.2     0.002       2.6     196     234 ..     321     358 ..     288     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.027
  Proteasom_PSMB  57 reqvtlcvellklilkalavdelaedlkvvlleglshanpnvkalvLaeleR 108
                      e+v ++++ l++i+    + ela+dl  +l++ l+h+ p++++ ++  l +
      CDO73429.1 112 PEEVAVALNGLSHIV----TPELARDLAPELIAMLNHSRPHIRKRAILALYK 159
                     566666666666655....456788888999999999999999887666554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
  Proteasom_PSMB 196 ivtellekllkeldgeDvLvqldalelltelAegkhgle 234
                      v+e  + +l+++++eD+ +++ al+l++ +  ++h+l+
      CDO73429.1 321 LVAEYQDMILSSVNDEDISIRMRALDLVSAMV-SRHNLQ 358
                     44555688999999999999999999998764.566666 PP

>> FANCI_S1  FANCI solenoid 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.37   4.8e+02       7      53 ..     117     163 ..     113     178 .. 0.84
   2 ?    8.6   0.0   0.00098       1.3     135     177 ..     192     234 ..     164     247 .. 0.84
   3 ?   -3.1   0.0       3.8   4.9e+03     124     150 ..     352     378 ..     331     387 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.37
    FANCI_S1   7 vvkvvlqliesgelseklasdlislLlleldklsgdhlvelvelcld 53 
                 v+   l +i ++el  +la +li++L    +++ + ++ +l +++++
  CDO73429.1 117 VALNGLSHIVTPELARDLAPELIAMLNHSRPHIRKRAILALYKAIMK 163
                 66677889999999999999999999999999999999999888875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00098
    FANCI_S1 135 kllrslkklklqElPpLvyQlLlLsakgskkviLeglikyFae 177
                  +l +l + ++ ++ pL+ Ql++L + +s++ +L +lik+F +
  CDO73429.1 192 NVLCELVHHNPRDYLPLAPQLFHLLTTSSNNWMLIKLIKLFGT 234
                 34556677799*****************************965 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.8
    FANCI_S1 124 LskeelelvvekllrslkklklqElPp 150
                  s+ +l+ +v+ ll++l k ++  lP+
  CDO73429.1 352 VSRHNLQPIVQHLLSHLVKSETASLPS 378
                 455556666666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 6494.03
//
Query:       CDO73430.1  [L=514]
Description: hypothetical protein BN946_scf185013.g64 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-72  242.3   0.0    7.3e-72  241.9   0.0    1.2  1  Pkinase         Protein kinase domain
    1.6e-51  175.1   0.0    2.3e-51  174.6   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
      2e-05   23.6   0.0    3.3e-05   22.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
    0.00015   21.2   0.0     0.0066   15.8   0.0    2.3  2  Kinase-like     Kinase-like
     0.0014   17.7   0.0       0.22   10.4   0.0    2.1  2  Haspin_kinase   Haspin like kinase domain
     0.0025   17.5   0.0      0.005   16.5   0.0    1.5  1  DUF1241         Protein of unknown function (DUF1241)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.0   2.5e-75   7.3e-72       1     264 []      24     275 ..      24     275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 2.5e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+k+ ++G+GsfG+Vyk+++k+t+k+vA+K+i+ e+a+++ e ++++Ei+il +l++p++ ++ ++f + ++l++v+ey++gg+  dl++  g++ ee 
  CDO73430.1  24 YVKQDRIGKGSFGEVYKGYDKRTQKTVAIKIIDLESAEDEIE-DIQQEIQILSQLDSPHVTKYHGSFLKGSHLWIVMEYCSGGSCSDLMK-PGVFREEY 120
                 678899********************************9885.9*********************************************7.69****** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkpp 196
                 +  i++++l+gl+ylH +g +HrD+K +NiL++ +g++K++DFG++ +l+ + +  +++fvgt+++++PEv+k+++y++k+D+WslG++ +el  g+pp
  CDO73430.1 121 IAIIVRELLKGLDYLHTEGKLHRDIKAANILLSANGDVKLADFGVSGQLSGTLSakKNTFVGTPYWMSPEVIKQSGYDHKADIWSLGITAIELAKGEPP 219
                 **************************************************9988889****************************************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++          el+ ++ ++ i   ++     +  +s+ +++++  +l++dpk+R+ta+ell+h+++
  CDO73430.1 220 YA----------ELHPMKVLFLIP--KNPPPTLEGPFSKAFREFVACCLQRDPKDRPTARELLKHKFI 275
                 **..........677755566654..34455556677*****************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   7.6e-55   2.3e-51       4     257 ..      27     271 ..      24     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 7.6e-55
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                  ++++G+G+fG+V++g+ k    +++ +Va+K+++ e+ e+e e++ +e++i+++l+ p++ k++g  +k+++l+iv+ey++gG+ ++ ++      ++
   CDO73430.1  27 QDRIGKGSFGEVYKGYDK----RTQKTVAIKIIDLESAEDEIEDIQQEIQILSQLDSPHVTKYHGSFLKGSHLWIVMEYCSGGSCSDLMKPG---VFR 117
                  678************999....8999*************************************************************99886...999 PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                   + +  ++ ++ kG++yL+++  +Hrd+ a N+Lls n  vk++DfG++ ++ +     kk++      Wm+pE++k++ + +k+D+Ws G++ +E++
   CDO73430.1 118 EEYIAIIVRELLKGLDYLHTEGKLHRDIKAANILLSANGDVKLADFGVSGQL-SGTLSAKKNTFVGTPYWMSPEVIKQSGYDHKADIWSLGITAIELA 214
                  999999**********************************************.4444455555566778****************************9 PP

                  TTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 200 tlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + ge py++l++++vl  + ++   +     ++++ e++  c+++dp++Rpt +el++
   CDO73430.1 215 K-GEPPYAELHPMKVLFLIPKNPPPTLEGPFSKAFREFVACCLQRDPKDRPTARELLK 271
                  9.*****************999999999999**********************99976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.1e-08   3.3e-05     312     392 ..     125     200 ..     119     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.1e-08
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee..Hs 392
                     +r+ +kg+  L+ + g LHrDi + Nil+      ++    L+D+ +  +ls  + ++++++ +GT+++m+ ev+k++   H+
      CDO73430.1 125 VRELLKGLDYLH-TEGKLHRDIKAANILLS-----ANGDVKLADFGVSGQLSG-TLSAKKNTFVGTPYWMSPEVIKQSGydHK 200
                     567789999***.9999*************.....677889***********7.6666779***************7553465 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.021        64      10      85 ..      20      91 ..      13      99 .. 0.74
   2 !   15.8   0.0   2.2e-06    0.0066     152     244 ..     127     214 ..     115     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.021
  Kinase-like 10 rertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknpeqAkdhlrlll 85
                 +e  +v+++ ++kg ++ v++  d+ t++ +a+k+  l  e ++ ++e ++++   + +l  ++p+  k h  +l+
   CDO73430.1 20 PEELYVKQDRIGKGSFGEVYKGYDKRTQKTVAIKIIDL--ESAEDEIEDIQQEIQILSQL--DSPHVTKYHGSFLK 91
                 5566799999****************999988887665..56788888887764333332..67777777766666 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.2e-06
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                  +l++   +L+ +g +h ++++ n+ll  +g ++l +f+       ++ ls  +++f       s       ++  + hk d W lG+++  ++
   CDO73430.1 127 ELLKGLDYLHTEGKLHRDIKAANILLSANGDVKLADFGV--SGQLSGTLSAKKNTFVGTPYWMSPEV---IKQSGYDHKADIWSLGITAIELA 214
                  56666789*****************************95..55556667777777754333333233...3668899**********987766 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   7.4e-05      0.22     108     155 ..      28      82 ..       9     108 .. 0.70
   2 !    5.1   0.0    0.0031       9.4     230     254 ..     142     166 ..     135     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.4e-05
  Haspin_kinase 108 d..seklssevyqtke..kdkevvlKvipl....evledvtiskelsl.kelkslkl 155
                    d  ++++++evy+ ++  ++k+v++K+i l    + +ed++ +  +++  +l s ++
     CDO73430.1  28 DriGKGSFGEVYKGYDkrTQKTVAIKIIDLesaeDEIEDIQQE--IQIlSQLDSPHV 82 
                    145999*******99978899*********6555444444443..333244444444 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0031
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlkls 254
                    HRd++  niL+ +n+ v l d+ +s
     CDO73430.1 142 HRDIKAANILLSANGDVKLADFGVS 166
                    *********************9876 PP

>> DUF1241  Protein of unknown function (DUF1241)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.7e-06     0.005       4      56 ..     454     506 ..     451     511 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
     DUF1241   4 vaslvlqvllrpvldkle.kkdvaaaqtLraalskaekesPgltqdlvkgllkk 56 
                 + s+vl+++    + +++ ++   a  +L+ a+++ae+  Pg+t +l++ ++++
  CDO73430.1 454 LDSVVLPAI-ASLFPRVStQEARVALSALQRAFTEAERIIPGVTLELINEIVDS 506
                 556666654.4577888834478999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3516.87
//
Query:       CDO73431.1  [L=182]
Description: hypothetical protein BN946_scf185013.g65 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1260.42
//
Query:       CDO73432.1  [L=189]
Description: hypothetical protein BN946_scf185013.g66, partial [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.3   0.1       0.06   13.1   0.1    1.5  1  DUF3806   Domain of unknown function (DUF3806)


Domain annotation for each model (and alignments):
>> DUF3806  Domain of unknown function (DUF3806)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.3e-06      0.06      29      84 ..       5      60 ..       3      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-06
                HHHHHHHHSTT-EEEEEEETTEEEEEEEET...TEEE-HHHHTHHHHHTT----HHH CS
     DUF3806 29 lGdiLvnemdgmeWvtveDgegeapalrat.gtsavvfPiklvssrvkkgekldlke 84
                lG++L+n+   m+W   +D ++  +al  +  + +++  + lv+ r++   +++l+e
  CDO73432.1  5 LGALLRNDS-VMDWIARIDVYRAMLALLKRmAECKLTLEQVLVGPRWEMSRSCGLEE 60
                9********.****************9876356667777778899999988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1299.39
//
Query:       CDO73433.1  [L=329]
Description: hypothetical protein BN946_scf185013.g68 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2280.41
//
Query:       CDO73434.1  [L=438]
Description: hypothetical protein BN946_scf185013.g69 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-27   94.2   0.1    9.6e-27   93.5   0.1    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    7.7e-18   65.8   0.0    2.3e-17   64.3   0.0    1.8  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0087   16.3   0.1        0.1   12.8   0.1    2.3  2  TrkA_N        TrkA-N domain
  ------ inclusion threshold ------
      0.019   15.0   0.0      0.058   13.4   0.0    1.7  1  PA            PA domain
      0.068   13.2   0.1       0.13   12.3   0.1    1.4  1  SIS_2         SIS domain
      0.079   12.8   0.0       0.29   11.0   0.0    1.9  2  ADH_N         Alcohol dehydrogenase GroES-like domain
       0.16   11.4   2.4       0.29   10.6   1.2    1.9  2  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   3.7e-30   9.6e-27       1     117 [.     258     374 ..     258     384 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 3.7e-30
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 g+Gl+  qlAk++Ga+vi++ s+eek++ a++ Gad+vi y+++++v+r+ elt+gegv+vv++ vG ++t+ + +kl++++G++v vG  +g  e + 
  CDO73434.1 258 GLGLLMAQLAKHAGATVIGTTSTEEKAAVARQHGADHVIIYTKENVVDRVLELTNGEGVHVVYDGVG-KDTFLDNFKLTRRKGTIVSVGNASGAVEpIA 355
                 89***************************************444***********************.*********************9555554488 PP

                 HHHHHHTT-EEEEE-SSCH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgsl 117
                 + +l+ k++ +l  +++++
  CDO73434.1 356 PLKLVEKNLALLRPTMANY 374
                 8889999999998888884 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   8.8e-21   2.3e-17       2     132 ..     291     431 ..     290     431 .. 0.76

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 8.8e-21
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.....S-EEE-CHHHCTTT-EEEE--GGG....-..... CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp....lsaallkpakkrkgrsvkyeflfs.mkas..... 84 
                   GAd+vi y++e+++    + t+gegv vv+d vg++++  + +k+ + +G++vs+g+ +            a   k    ++ +l + m ++     
    CDO73434.1 291 GADHVIIYTKENVVdrvlELTNGEGVHVVYDGVGKDTF-LDNFKLTRRKGTIVSVGNASgaveP------IAP-LKLVEKNLALLRPtMANYiytpe 379
                   9*************************************.5556888666*******75533331......222.22333333333331333365332 PP

                   .-HHHH...HHHHHHHHHHH----EEEEEEGGG..HHHHHHHH..HSS--SSEEE CS
  ADH_zinc_N_2  85 aqadil...eelaalieeGklrpvvdrvfplee..aaeAhryl..esgrarGKiV 132
                   +        e+l+ +i++G l++ + +++p++   a++Ahr+l  + gr++GK+V
    CDO73434.1 380 EA---RyygEKLFGYISSGVLKINIHKQYPFTTqgARDAHRDLttKGGRTIGKLV 431
                   22...134599********************9999********8888******99 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.1e-05       0.1      53     114 ..     236     296 ..     226     298 .. 0.83
   2 ?    0.6   0.0      0.25   6.4e+02      34      73 ..     308     347 ..     300     374 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                 HHHHHT.TGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEE CS
      TrkA_N  53 evLeea.giekadaviaatgddeanilavllakelnpkkkiiaraqdpehaellkklgadvvi 114
                  +Leea +++  d+v++ t      +l+++lak+   ++++i  ++++e+a ++++ gad+vi
  CDO73434.1 236 TFLEEAyKVKPGDVVLIYTVAGGLGLLMAQLAKH--AGATVIGTTSTEEKAAVARQHGADHVI 296
                 5666666677778888888888888999999995..5579**********************9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.25
                 HHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH CS
      TrkA_N  34 veelreeglevvvgdatdeevLeeagiekadaviaatgdd 73 
                 +e    eg++vv+  + ++ +L++ ++ + ++ i+ +g+ 
  CDO73434.1 308 LELTNGEGVHVVYDGVGKDTFLDNFKLTRRKGTIVSVGNA 347
                 44456788*****9999**********9999999998876 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.058      23      57 ..     243     302 ..     222     327 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
          PA  23 dvk.GkivLvqrtf..........................aeKarnAqaaGAagviivndge 57 
                 +vk G +vL+   +                           eKa++A+++GA  vii+++++
  CDO73434.1 243 KVKpGDVVLI--YTvagglgllmaqlakhagatvigttstEEKAAVARQHGADHVIIYTKEN 302
                 5555777777..4455566666666677777777777788******************5544 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.1e-05      0.13      95     138 .]     238     279 ..     217     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
                 HHHHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  95 ilrlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 + + +++kpgDv l++   G       +a+ ak  g++vi+ ts
  CDO73434.1 238 LEEAYKVKPGDVVLIYTVAGGLGL--LMAQLAKHAGATVIGTTS 279
                 45669***************8775..59*************997 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.29       8      46 ..     124     161 ..     122     170 .. 0.89
   2 ?   -3.6   0.0       3.9     1e+04      49      63 ..     240     254 ..     236     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                 EEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEE CS
       ADH_N   8 vkaagiCgsDlhilkggkelevklplilGHEivGeveev 46 
                 v++ g++  D  + kg   +  ++p+ilG E++G+++++
  CDO73434.1 124 VAYGGVNFIDTYYRKG-LYPIKSFPQILGMEASGTIVSL 161
                 78899******99999.89999**************986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.9
                 T-CS--TT-EEEE-S CS
       ADH_N  49 evkklkvGdrVvvep 63 
                 e  k+k Gd V+++ 
  CDO73434.1 240 EAYKVKPGDVVLIYT 254
                 5568999**999875 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2   0.00011      0.29       2      47 ..     249     293 ..     248     307 .. 0.81
   2 ?   -1.3   0.0      0.49   1.2e+03     119     141 ..     328     351 ..     323     355 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee 47 
                 vvl+   ++G+G+ +a+    +Ga+v+ + ++eek+ +va + +++
  CDO73434.1 249 VVLIYTVAGGLGLLMAQLAKHAGATVIGTTSTEEKA-AVARQHGAD 293
                 79999999********************99999998.666666654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.49
                 HHHHHH.HCTTEEEEEEEEGGGTS CS
   adh_short 119 vlpaml.kqssGrIvnvsSvagkv 141
                 +l++++  +++G+Iv v+   g v
  CDO73434.1 328 FLDNFKlTRRKGTIVSVGNASGAV 351
                 677777789********9887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2926.27
//
Query:       CDO73435.1  [L=405]
Description: hypothetical protein BN946_scf185013.g70 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-39  136.4   0.0    6.5e-38  130.6   0.0    2.9  1  Y_phosphatase    Protein-tyrosine phosphatase
    0.00052   20.2   0.0     0.0011   19.2   0.0    1.5  1  PTPlike_phytase  Inositol hexakisphosphate
  ------ inclusion threshold ------
      0.029   14.3   0.1      0.063   13.2   0.0    1.6  2  Y_phosphatase3   Tyrosine phosphatase family
       0.14   11.9   0.0       0.36   10.7   0.0    1.6  1  DSPc             Dual specificity phosphatase, catalytic doma


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   1.5e-41   6.5e-38       3     234 ..      84     390 ..      82     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.5e-41
                    GGSSSTTS-B-CTTEEEB.........TTTTTTTTEEEEEEEEECTEEEEEEEEE---GGGHHHHHHHHHHT................T--EEEEE CS
  Y_phosphatase   3 eknRykdilpydksrVkl.........kssegpsdYInAnyikgykkekkyIatQgPlkstvedFWrmvwqe................kvkvivmL 73 
                    + nRy di+pyd++rV++          ss+++  Y nAn+++     k +IatQ+Pl++t + F +++++                 +v+++v+L
     CDO73435.1  84 HENRYIDIVPYDRTRVVVcpgepshdcPSSCTSGRYLNANWVRELAGGKWWIATQAPLPHTAHTFLSVILEGispppgtslsnlrqlnRVRTVVQL 179
                    68*********************988766677667*******99999**********************98555555555555666669******* PP

                    SBSEETTEESS---S-SSTSSEEEETT........EEEEEE.EEEEEESSEEEEEEEEEETTTTE....EEEEEEEEEESSS-SSSSG..SCCHHH CS
  Y_phosphatase  74 tsleekgrekcaqYwpeeeeesleygk........ikvtlkekekedekeyvlrelevkkkkees....eerevkqlqytnWpdhgvp..esaksl 155
                    t+  e+g +k + Y+p   ++s  ++         i+vtl+ +++ +++++v ++++++  ++++    ++  +++l y +Wpdhgvp  e+ ++l
     CDO73435.1 180 TQNLESGARKAHIYFPPVAGQSWVIEPergrgdppIQVTLVRTQSIEDAHCVQSVVSLQLLSQNRtptgDPVLFQHLLYASWPDHGVParEDRDGL 275
                    ****************7777754444333446677999999666667778999999999777776778788889**************888899** PP

                    HHHHHHHHHHH...........STTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSE.EEHHH........................HHHHHHTT CS
  Y_phosphatase 156 lklirkveksk...........eaksgpvvVhCsaGvgRtgtfvaldillqqleaeee.vdvlq........................ivkelrkq 215
                    l +ir v + +            + + p++V CsaGvgRtg+f+a+  ll++ +  +  ++  +                         v++lr+q
     CDO73435.1 276 LCFIRLVDEANrdlslftgmsdLDPNPPIMVNCSAGVGRTGAFIAICSLLRHYRFLSPaTKPGEeisplppsplgplppeieddlvaqEVESLREQ 371
                    *******99999********997899*************************99883332222224444567788888888888888889******* PP

                    STTSS-SHHHHHHHHHHHH CS
  Y_phosphatase 216 Rpgmvqtleqyiflyevil 234
                    Rpgmvq  +q + +ye+++
     CDO73435.1 372 RPGMVQRDDQVVLIYETLI 390
                    ***************9986 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.4e-07    0.0011     108     156 .]     262     326 ..     259     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.4e-07
                      -TTS---HHHHHHHHHHHHTS-T................T-EEEEE-SSSSHHHHHHHHHHHHHH CS
  PTPlike_phytase 108 tdekapeeedfdalvsilkeape................ktalvfnCqmGrgRTTtamviatLll 156
                      +d++ p  ed d l+ +++ + e                ++++++nC++G+gRT  +++i++Ll+
       CDO73435.1 262 PDHGVPAREDRDGLLCFIRLVDEanrdlslftgmsdldpNPPIMVNCSAGVGRTGAFIAICSLLR 326
                      788888888888888888877556789999999999999***********************996 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.3   5.8e+03     174     196 ..      41      71 ..      26      78 .. 0.53
   2 ?   13.2   0.0   1.4e-05     0.063     112     142 ..     290     323 ..     161     327 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
  Y_phosphatase3 174 leeellaea........leellsvrpeylea 196
                     ++++++++         l++ +++++ey+++
      CDO73435.1  41 AASKHQSHPskrhrishLASTMAIKAEYIKH 71 
                     2222211113344555677777777777765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.4e-05
  Y_phosphatase3 112 kvfealad.ee..pvlfHCtaGKDRTGvlaalll 142
                      +f+ + d ++  p++++C+aG  RTG ++a++ 
      CDO73435.1 290 SLFTGMSDlDPnpPIMVNCSAGVGRTGAFIAICS 323
                     5677777765568***************999875 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     8e-05      0.36      74      92 ..     302     320 ..     297     333 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8e-05
                 -EEEEEESSSSSHHHHHHH CS
        DSPc  74 kkvlVHCqaGisRSatlii 92 
                   ++V+C aG+ R++++i+
  CDO73435.1 302 PPIMVNCSAGVGRTGAFIA 320
                 579***********98874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2754.88
//
Query:       CDO73436.1  [L=503]
Description: hypothetical protein BN946_scf185013.g71 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-52  177.6   0.0    1.2e-51  175.9   0.0    1.6  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   6.7e-56   1.2e-51       6     462 ..      41     492 ..      36     493 .. 0.83

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 6.7e-56
                 EHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHH CS
        p450   6 plplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltp 104
                  l ++  +++ ++   +  + + ++k yg++f++ +  +  vv+sgp++v e+ ++ ++e s ++    l   + +++     +++  +   +R  lt+
  CDO73436.1  41 FLSVFTAIKWARH--GRDLIQEGYRKYYGSVFKIAMFDRWLVVVSGPKLVDELRKRPDDELSTEHGLQALI--PVQYMVGEETVKDLYHVDIIREKLTR 135
                 5667777788874..555555799*********************************98888864433333..34455555555555566666666666 PP

                 HHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCS CS
        p450 105 tltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylp 202
                 ++ s     l ++v+e      e++ +++ e  ++++++   +++  +++++++g++    ++   ++++++  +       +++ llllfp +lk+l 
  CDO73436.1 136 SISSI----LPDVVDELQLATEEYIPTTKHEWISVNVFQKSREIVARASSRVFVGMHAC--RN---PDYLDLCINFTADIIRDRT-LLLLFPkILKPLV 224
                 66644....44444444444444554444444499*********************955..33...3444444444444445664.5566666****** PP

                 CHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC....SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH CS
        p450 203 tkllrklkeavkklkdlldklieerretldsa....kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqe 297
                 +    +  + v++++ +l+++i er++++ +      ++++d+l+ +++++ e +++   + + + + +l   fa+++T+s+ ++ a+y++a++Pe+ +
  CDO73436.1 225 SLCAGRSAHTVQRAIPILQPIIDERKRKMGQYredwADKPNDMLQWIIDES-EVRNG---TYTSIIERILLTNFAAIHTSSNSITHAIYHIAEHPEYLQ 319
                 ****************************9998899*889***********7.88887...99************************************* PP

                 HHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS.. CS
        p450 298 klreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.. 393
                  lreEi++++++ +  t   l k+  ld +++E++R   +  ++l+R++++dv++++  lip G  v+   + lh d++++p++e Fdp RF +e++  
  CDO73436.1 320 PLREEIESIVNE-EGWTKTGLGKMWKLDSFLRESQRHNGINIISLSRKAMQDVTLSDgTLIPRGALVVAASTPLHLDNNIYPDAEAFDPFRFAREREre 417
                 **********99.47*****************************************99***************************************** PP

                 ......CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSSSEEE CS
        p450 394 ......nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkpiklk 462
                       +    s+ +++FG G+++C+G+ +A  elk +la ++ n+++++  +++ pp++++   ++p ++++++
  CDO73436.1 418 gqsskhQYVNTSVDYIAFGHGKHACPGRFFAANELKAMLAFMVLNYDIKFGGDGKRPPNMHWGPTIVPAPNAQVL 492
                 *988874446799*************************************8888888888877788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3409.57
//
Query:       CDO73437.1  [L=406]
Description: hypothetical protein BN946_scf185013.g72 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-54  185.7   0.0    1.5e-54  185.5   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.0   8.2e-59   1.5e-54     138     461 ..      64     390 ..      27     392 .. 0.86

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 8.2e-59
                 EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC. CS
        p450 138 elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlldklieerretldsa. 234
                 ++++ +   +++  +++++++g +      + ++ l+ a+   ++++ +++ ++++ +p +lk++ +++    k+ vk +  ll+++ieerr++ ++  
  CDO73437.1  64 KVNVMQATRDIVARASNRVFVGLPAC---RN-REYLDLAISFTLDVV-NDR-NIINSYPsILKPIVGRMVGNGKRNVKLATPLLNPFIEERRQKKKEYg 156
                 67777777777777777777777744...22.224666677777777.444.68888888**********************************99999 PP

                 ...SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHH CS
        p450 235 ...kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikE 330
                     ++++d+l+ +++a     + + +sd+ +++ +l + fa+++T+s+ ++ a+y+La++Pe+ + lreEi+ +l++ +  t + ++k+  ld +++E
  CDO73437.1 157 gdwPNKPNDMLQWMMDAA---GD-DAMSDRSIVERMLLVNFAAIHTSSNSITHAIYHLAEHPEYLQPLREEIEPILRE-EGWTKASMTKMWKLDSFLRE 250
                 ***668***********6...33.47**************************************************88.47****************** PP

                 HHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS........CTESSCTT--TTEEGGGS-TTHHHHHH CS
        p450 331 tLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg........nskrksfaflPFGaGpRnCiGerlArm 420
                 ++Rl  +  ++l R++ kdvv+++ +lip Gt ++  +y++h+d++v+ ++ +Fdp RF ++++        ++   s+ ++PFG G+++C+G+ +A  
  CDO73437.1 251 SQRLNGLNLTSLIRKAQKDVVLSNgVLIPRGTLMVAAAYSTHHDDDVYADAMMFDPFRFARKREaegesakhQFANTSVDYVPFGHGKHACPGRFFAAN 349
                 **********************999**************************************9*******989999********************** PP

                 HHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSSSEE CS
        p450 421 elklflatlLqnFevelqpetdpppileksglllppkpikl 461
                 elk +la ++ n++++l  +++ p +l++   +lp +++++
  CDO73437.1 350 ELKAMLAYIVLNYDIKLGGDGKRPANLHWGWAILPDPNAEV 390
                 ****************9777777777776566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2943.72
//
Query:       CDO73438.1  [L=329]
Description: hypothetical protein BN946_scf185013.g73 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-11   40.8   0.1    1.5e-10   40.0   0.1    1.3  1  Vps62     Vacuolar protein sorting-associated protein 62


Domain annotation for each model (and alignments):
>> Vps62  Vacuolar protein sorting-associated protein 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   8.3e-15   1.5e-10     365     433 ..     151     215 ..     138     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.3e-15
       Vps62 365 kiGehvgdWehvtlrisnfsgeLlsvyfsqhsgGewvdasdlefieggnkavvyssknghasypkpglv 433
                 + G+hvgdWeh  +r  n  g  ++vy+s hsgG+  d s ++ ++g  ++++y +   ha y+++g  
  CDO73438.1 151 EFGDHVGDWEHSMVRFVN--GTPTAVYLSAHSGGSAFDFSAMQKTNG--RPTTYIAGGTHANYATAGQH 215
                 579************987..8889******************99997..****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2269.55
//
Query:       CDO73439.1  [L=723]
Description: hypothetical protein BN946_scf185013.g74 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-47  159.5   0.0    1.2e-46  159.1   0.0    1.1  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0   6.6e-51   1.2e-46       2     214 ..     452     659 ..     451     660 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 6.6e-51
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp.es.esfknkqgqnqLeriLkaysiynpevgYcqGmndiva 98 
                 + R+ +W++l+   +     +  + + ++ + e+++  +++ s++  qI++Dvprt++ +  ++ +++qgq++L+++L+ +s+++  +gYcqGm  i+a
  CDO73439.1 452 CWRSAAWEVLMCRFS-----RTGKVELRQLMREYHDALDKP-SSYDVQIDLDVPRTISgHVmFRTRYGQGQRSLFHVLHSLSLRCDSCGYCQGMGPIAA 544
                 68999*****99844.....222233344455555555555.56689***********7668************************************* PP

  RabGAP-TBC  99 plllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegek 196
                 +ll+++ +e+ a+  +v+L ++y+++ ++++++pgl +++++ e+l ++ +p++y  +k++++ ++ +a+kw++tlf++++p++t lrlwD +lleg+ 
  CDO73439.1 545 TLLCYFEPER-AYASLVRLHDSYSMHAIFSPGFPGLLEAIYMQERLTEQMLPAVYAAFKRHMISTTSYATKWYITLFANSVPFQTQLRLWDaFLLEGHD 642
                 ***6665555.********************************************************************************9999**98 PP

  RabGAP-TBC 197 fvllrvalailklleeel 214
                 + ++ va+ai++ +++++
  CDO73439.1 643 I-FVVVAVAIVWVYRDHI 659
                 8.8899999***999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4808.56
//
Query:       CDO73440.1  [L=185]
Description: hypothetical protein BN946_scf185013.g75 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1268.59
//
Query:       CDO73441.1  [L=654]
Description: hypothetical protein BN946_scf185013.g76 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-80  268.6  24.8      8e-80  268.1  24.8    1.1  1  Mg_trans_NIPA  Magnesium transporter NIPA
    8.9e-06   25.9   6.2    8.9e-06   25.9   6.2    3.1  3  EamA           EamA-like transporter family
    0.00096   17.9   7.6     0.0018   17.0   7.6    1.3  1  Tmemb_161AB    Predicted transmembrane protein 161AB
  ------ inclusion threshold ------
      0.019   14.8   1.6      0.037   13.8   0.3    2.2  2  Trp_oprn_chp   Tryptophan-associated transmembrane protein (T
       0.39   11.1   7.7       0.97    9.9   7.7    1.6  1  DUF3796        Protein of unknown function (DUF3796)
        2.1    8.4   7.1        2.4    8.2   0.5    2.4  2  Ac76           Orf76 (Ac76)
        8.7    5.9  10.8        2.2    7.8   7.3    1.8  2  DUF2208        Predicted membrane protein (DUF2208)


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1  24.8   3.1e-83     8e-80       5     293 ..      30     314 ..      27     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 3.1e-83
  Mg_trans_NIPA   5 iGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLkek 100
                    +Gv La+ s ++igssf+ kk+gll +++kg+v ag  G aylk+++Ww+G++ m++Ge  nf ayaf  a++vtP+Galsv++s++l++++L+e+
     CDO73441.1  30 VGVALAIGSGVLIGSSFVFKKRGLL-ASQKGQV-AG-EGVAYLKSPMWWTGMIIMILGELCNFGAYAFVEAIIVTPMGALSVVISSILSHFFLHER 122
                    7**********************98.6788844.44.689******************************************************** PP

  Mg_trans_NIPA 101 LkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvlilyveprkGktnilvyitlcsllgsltvisvkalgiai 196
                    L ++g +  + ++lG+t+l +  P+e+++ +++  ++l+  p fl+y  +v++v+ vl++ v+pr Gk+ ++ y+++csl+g l+v++ ++lg +i
     CDO73441.1 123 LSVFGWISSVQCLLGATILALNGPEEQSVSTIEGFKHLFLAPWFLAYGGVVLAVAAVLAFWVAPRWGKKSMMPYLGVCSLIGGLSVSCTQGLGASI 218
                    ************************************************************************************************ PP

  Mg_trans_NIPA 197 kltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsGfllvllgvfllhat 292
                      ++ G +q+k++  ++ll+ +++++ + i yLn al  fnt++vtP yyv+ft  ++v+s+il++   +as+ ++++ +  f ++ +g+++l+ t
     CDO73441.1 219 VTSIRGDNQFKNWFIYFLLVFVIVTLLTEIYYLNVALAKFNTAMVTPTYYVIFTFCTLVTSVILYQGL-KASASQIITIVLAFAVICTGIVILQMT 313
                    ******************************************************************96.578899******************987 PP

  Mg_trans_NIPA 293 r 293
                    +
     CDO73441.1 314 K 314
                    6 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.19   4.8e+02       3      25 ..      31      53 ..      29      62 .. 0.89
   2 !   25.9   6.2   3.5e-09   8.9e-06      70     135 ..      76     141 ..      68     143 .. 0.95
   3 ?    1.6  17.5      0.11   2.9e+02       3     132 ..     171     303 ..     169     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.19
        EamA  3 gillallaalfwaiyfvlskill 25
                g+ la+ + ++ +++fv+ k++l
  CDO73441.1 31 GVALAIGSGVLIGSSFVFKKRGL 53
                899***************99875 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 3.5e-09
        EamA  70 lgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 +g + ++l+ l+ f a   ++a +++++ +l++v++ ils+++l+e+l+++ +++ v +llG+ ++
  CDO73441.1  76 TGMIIMILGELCNFGAYAFVEAIIVTPMGALSVVISSILSHFFLHERLSVFGWISSVQCLLGATIL 141
                 6788899*******************************************************9987 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.11
        EamA   3 gillallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                 g++la++a+l + +++    k ++ ++   +l +  ++ ++  l + ++ + + +++++   + +ll++ ++  +   + ++ al k + + +++  ++
  CDO73441.1 171 GVVLAVAAVLAFWVAPRWGkKSMMPYLGVCSLIGGLSVSCTQGLGASIVTSIRGDNQFKNWFIYFLLVFVIVTLLTEIYYLNVALAKFNTAMVTPTYYV 269
                 89999*****9999999994555889999999999999999999777777777776688888888888888888888999****************999 PP

        EamA 101 ePvftlilsvlll..gekltlkqllgivlillGv 132
                 +  f ++  +++l  g k + +q++ ivl+++ +
  CDO73441.1 270 IFTFCTLVTSVILyqGLKASASQIITIVLAFAVI 303
                 87765555555554999999**********9876 PP

>> Tmemb_161AB  Predicted transmembrane protein 161AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   7.6   7.1e-07    0.0018     105     188 ..     230     312 ..     226     334 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.1e-07
  Tmemb_161AB 105 qWLvdfsvyallvyllteiyyfllpskkevnlsllwcllvvlFalkvllsltsvYfkseeggErslllvfgflflvlamlvliv 188
                  +W++ f +++++v llteiyy  +    ++n +++     v+F++ +l++ + +Y    ++  + +++v +f+++ +++++l +
   CDO73441.1 230 NWFIYFLLVFVIVTLLTEIYYLNVAL-AKFNTAMVTPTYYVIFTFCTLVTSVILYQGLKASASQIITIVLAFAVICTGIVILQM 312
                  6********************99997.89****************************999999999999999999988888765 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   1.4e-05     0.037     116     147 ..     152     192 ..     123     193 .. 0.76
   2 ?   -2.9   0.1         2     5e+03     120     140 ..     293     313 ..     278     344 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
  Trp_oprn_chp 116 ta.........wpvlalaggvllllagvllllrarswpams 147
                   ++         +p++ + ggv+l++a+vl+++ a +w+++s
    CDO73441.1 152 STiegfkhlflAPWFLAYGGVVLAVAAVLAFWVAPRWGKKS 192
                   223345556669*************************9876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
  Trp_oprn_chp 120 vlalaggvllllagvllllra 140
                   +++++ + +++++g+++l + 
    CDO73441.1 293 IITIVLAFAVICTGIVILQMT 313
                   333333333333343333333 PP

>> DUF3796  Protein of unknown function (DUF3796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.7   0.00038      0.97       3     108 ..     194     302 ..     192     315 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00038
     DUF3796   3 lgllGflgllGflglfyflle.............eealllffaFfaffsfffvaklstvllDErfeenvkraaaiafkvaileiiiavlislilsrvel 88 
                 + +lG ++l+G l++ +   +             +        F   f +f +  +  +ll E ++ nv+ a++++  v+ +  +i+ + +l++s + l
  CDO73441.1 194 MPYLGVCSLIGGLSVSCT--QglgasivtsirgdN-------QFKNWFIYFLLVFVIVTLLTEIYYLNVALAKFNTAMVTPTYYVIFTFCTLVTSVI-L 282
                 679***********9993..336655544433222.......3555555555555666999***********************9999999987666.4 PP

     DUF3796  89 sevllalllaslilafGlsl 108
                  ++l a   +++ +++++++
  CDO73441.1 283 YQGLKASASQIITIVLAFAV 302
                 45544444443333333332 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5   0.00094       2.4      21      47 ..     226     252 ..     213     260 .. 0.86
   2 ?    3.1   1.1     0.038        97       3      51 ..     269     316 ..     267     328 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00094
        Ac76  21 eklsellltllllfvlFiillnvyyik 47 
                 +++++ +++ ll+fv+  +l ++yy +
  CDO73441.1 226 NQFKNWFIYFLLVFVIVTLLTEIYYLN 252
                 468999*******************98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.038
        Ac76   3 iilllialivlafildkneklsellltllllfvlF...iillnvyyikteSt 51 
                 +i+++ +l++  ++++  + + + ++t++l f +    i++l++       +
  CDO73441.1 269 VIFTFCTLVTSVILYQGLKASASQIITIVLAFAVIctgIVILQMTK----VD 316
                 7899999999999999887777777766665544312244444443....33 PP

>> DUF2208  Predicted membrane protein (DUF2208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.4   6.1e+03     133     160 ..     166     194 ..     153     197 .. 0.62
   2 ?    7.8   7.3   0.00087       2.2      85     180 ..     226     313 ..     220     327 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.4
     DUF2208 133 flalFealflismflrlla.rrvlkklvm 160
                 fla+ ++++++  +l +++  r  kk++m
  CDO73441.1 166 FLAYGGVVLAVAAVLAFWVaPRWGKKSMM 194
                 45555556667777777774555555555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00087
     DUF2208  85 eqlkasmitllllliviilffllyryiiplassllgevleeklarflaflalFealflismflrllarrvlkklvmlimatsykvtekGivlkkrt 180
                 +q+k  +i++ll++++ +l++ +y + + la++++  v         ++ ++F + +l+++++ +   + +  ++ ++++  ++v  +Giv+ + t
  CDO73441.1 226 NQFKNWFIYFLLVFVIVTLLTEIYYLNVALAKFNTAMV-------TPTYYVIFTFCTLVTSVILYQGLKASASQI-ITIVLAFAVICTGIVILQMT 313
                 58888888888877777777777766677777777555.......566778899999999999766666666655.555569*********97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4754.35
//
Query:       CDO73442.1  [L=413]
Description: hypothetical protein BN946_scf185013.g77 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   45.9   0.0    2.3e-08   33.7   0.0    3.0  3  Lactonase  Lactonase, 7-bladed beta-propeller
     0.0021   17.2   0.0      0.079   12.0   0.0    2.8  3  DUF1513    Protein of unknown function (DUF1513)


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   2.5e-12   2.3e-08     198     326 ..      37     177 ..      34     186 .. 0.85
   2 !    6.9   0.0   0.00036       3.3     233     281 ..     190     240 ..     179     244 .. 0.83
   3 ?    1.3   0.0     0.018   1.6e+02     159     236 ..     312     389 ..     276     401 .. 0.61

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2.5e-12
                 E-TTSSEEEEEETTTTE.EEEEEEE-TTTEEEEEEEEESS-TSS-S-.........--EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--.EE.EEE CS
   Lactonase 198 FhpdgkiaYvvnELsst.vsvfsydeatgaleelqtvstlpegftgk.........nsaaeIrlspdgkflyvSnRgadsiavfavdeadgt.lt.lve 284
                 F+++g   +++nE +++ v++ s++ ++g+l+  + vs+   g++g           + ++I+ s++g+ l + n g+++i++f++d+++ t ++ l +
  CDO73442.1  37 FNAAGALYFITNEPDENmVIAASIN-SDGTLNLDRAVSAGGRGAHGLtdplgpdalFAQGAIKASAKGQVLATVNPGSNTISLFSIDPKTPTnIQpLGD 134
                 89999999999**986615555888.******999999999977777677888877799***************************9996431331345 PP

                 EEE-SSS.--EEEE-TTSSEEEEEETTTTE.EEEEEEETTTTE CS
   Lactonase 285 evstegkfPRdfaldpsgklllvanqksdn.vtvferdaetGk 326
                  vs+eg+fP +++++ +g+ l v n  + n v  + +d++tG 
  CDO73442.1 135 PVSSEGEFPMSLTFNTDGSRLCVLNGGTVNgVNCYTVDKKTGL 177
                 79***********************988777***********6 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00036
                 EESS-TSS-S---EEEEEE-TTSSEEEEEETS....STEEEEEEE-TTT--EE CS
   Lactonase 233 vstlpegftgknsaaeIrlspdgkflyvSnRg....adsiavfavdeadgtlt 281
                  +t+p++  +  s + I  s+dgk l +S +g       iav++v ++dg+l+
  CDO73442.1 190 NQTTPATGPAG-STSHIIFSEDGKQLLASVKGvppnPGMIAVWDV-ADDGSLS 240
                 46777765555.79********************99999******.8889986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.018
                 EEETTTTEEEEEEE.-TTS-EEEEEEEE-STT--E..EEEEE-TTSSEEEEEETTTTEEEEEEEE-TTTEEEEEEEEESS CS
   Lactonase 159 vpDLGtDrvrvykldkatgkltepasvklppgsGP..RHlaFhpdgkiaYvvnELsstvsvfsydeatgaleelqtvstl 236
                   D Gt  v+ + +d++ +  + +++++ ++g+      +a  + ++++Yv+   ++tv+v++++ + g+ +++q ++  
  CDO73442.1 312 LSDIGTSIVTEVHVDDNLK-ASIVKQYQQTQGAATidNDIATINGKDMMYVLAPGTQTVEVLALN-SPGNAKHVQSLNIA 389
                 4455555555555555542.344555555555544112333344567777777777778887777.77777777776654 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.078     7e+02     220     259 ..      95     134 ..      90     139 .. 0.86
   2 ?    0.8   0.0     0.023     2e+02      95     120 ..     137     162 ..     133     168 .. 0.86
   3 !   12.0   0.0   8.8e-06     0.079      55      94 ..     204     243 ..     199     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.078
     DUF1513 220 gsvavdsegrlvavtsPrgnlvavwdlasgelleeaalad 259
                 g++ ++++g+++a+  P  n++ +++ + ++ ++ ++l d
  CDO73442.1  95 GAIKASAKGQVLATVNPGSNTISLFSIDPKTPTNIQPLGD 134
                 7899999999999999999***999988888877777765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.023
     DUF1513  95 stgGigpHelllladgetLvvAnGGi 120
                 s++G  p  l+   dg+ L+v nGG 
  CDO73442.1 137 SSEGEFPMSLTFNTDGSRLCVLNGGT 162
                 677888889999*************5 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 8.8e-06
     DUF1513  55 HgvfsadGrlLyttEndletgrGvigvydaaeglkkvaef 94 
                 H +fs+dG+ L+++ + + ++ G+i+v+d+a++ +  a+f
  CDO73442.1 204 HIIFSEDGKQLLASVKGVPPNPGMIAVWDVADDGSLSADF 243
                 99****************************9877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2863.54
//
Query:       CDO73443.1  [L=225]
Description: hypothetical protein BN946_scf185013.g78 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-05   23.0   2.0    0.00014   21.7   2.0    1.7  1  F-box-like  F-box-like
    0.00093   19.0   1.0     0.0021   17.9   1.0    1.7  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.033   13.9   0.0      0.086   12.6   0.0    1.8  1  RPEL        RPEL repeat
       0.32   11.2   3.0       0.25   11.6   0.5    2.0  2  HTH_17      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   2.0     3e-08   0.00014       2      26 ..       3      27 ..       2      28 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3e-08
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlal 26
                ++LP+EiLl+I+s+L++ dL+ la+
  CDO73443.1  3 LYLPPEILLYILSFLDLPDLVCLAR 27
                79******************99886 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.0   4.7e-07    0.0021       4      28 ..       3      27 ..       2      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.7e-07
                HHS-HHHHHHHHHTS-HHHHHHHCT CS
       F-box  4 srLPsevlrhILerLplsdllalrr 28
                + LP+e+l+ IL++L+l dl+ l+r
  CDO73443.1  3 LYLPPEILLYILSFLDLPDLVCLAR 27
                569******************9997 PP

>> RPEL  RPEL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05     0.086       9      22 ..      69      82 ..      68      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
        RPEL  9 RPtreELvernILp 22
                RPt+ +Lv r+I++
  CDO73443.1 69 RPTVSDLVHRGIIR 82
                ************85 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   5.5e-05      0.25      15      37 ..      69      91 ..      69      91 .. 0.96
   2 ?   -1.6   0.1      0.71   3.2e+03      16      23 ..     156     163 ..     155     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.5e-05
      HTH_17 15 rstvyrlirrgelpaakiGrrwr 37
                r tv +l++rg ++  +i rrwr
  CDO73443.1 69 RPTVSDLVHRGIIRGIGIERRWR 91
                78********************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.71
      HTH_17  16 stvyrlir 23 
                 stv+rl+ 
  CDO73443.1 156 STVRRLRW 163
                 89999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1641.04
//
Query:       CDO73444.1  [L=265]
Description: hypothetical protein BN946_scf185013.g79 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-39  134.1   0.0    5.2e-39  133.8   0.0    1.1  1  CutC        CutC family
  ------ inclusion threshold ------
      0.024   14.1   0.1      0.036   13.5   0.1    1.2  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   5.8e-43   5.2e-39      32     200 ..      29     209 ..      11     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 5.8e-43
        CutC  32 vgGltPslgvlkeaae..eakipvyvmiRPRgGdFvysdeelkamleDieaarelgldgvvlGaltadgeiDlkaleklieaaegLgvtfHrAfDvvad 128
                 +gG+tPs+g+ k+++e   + +p++vmiRPR GdF+y d el++m+eD++  + +g+dgvv+G+l++dg iD+ +++ l + a +L+v fHrA+D++++
  CDO73444.1  29 EGGTTPSIGLFKAVREatPQGTPIMVMIRPRVGDFFYTDAELQVMREDVRIFKAAGADGVVIGILQKDGRIDVTRTKILAAEAAPLQVCFHRAVDMSSQ 127
                 79************99555679**************************************************************************987 PP

        CutC 129 ..peealeqlielgvervLtsGqkssal..egleklaeLveqaae...rieimagaGvnaenvaelakk...tGvaevHlsa 200
                    +  l+      v r+LtsGq+  a+   +l+ l+ L++ a+      +++ g+G+na+ v  l  +    G++e+Hls 
  CDO73444.1 128 diLSAHLDVSSIPHVTRMLTSGQAPTATtpAALPSLRMLLRTASRmpsSAKVLVGSGINANTVGPLLAEllpCGLREIHLSG 209
                 44455677777779*********966652268899*****99975222689**********998776543338999999985 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     4e-06     0.036     127     208 ..      40     128 ..      35     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-06
  PEP_mutase 127 aaaraaaeeag...fvinARtdalllsagagleeaieRaraYaeAGAdgvfvpglqkdaeiaelvaav.d...vplnvvpl.kgtlsvae 208
                 +a+r+a ++     ++i  R+  ++   +a+l+   e  r +++AGAdgv++  lqkd  i    +++     +pl v  +   ++s ++
  CDO73444.1  40 KAVREATPQGTpimVMIRPRVGDFFY-TDAELQVMREDVRIFKAAGADGVVIGILQKDGRIDVTRTKIlAaeaAPLQVCFHrAVDMSSQD 128
                 56777766644788899999988884.6677777778899******************99977666664466799999884233455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2027.13
//
Query:       CDO73445.1  [L=352]
Description: hypothetical protein BN946_scf185013.g80 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-06   27.0   0.0    9.4e-06   25.7   0.0    1.6  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
     0.0024   17.7   0.3     0.0043   16.9   0.3    1.4  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.1e-09   9.4e-06       1      43 [.     260     303 ..     260     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.1e-09
                 EHHHHTTTECTT.EEEEEETTEEEECTTTCCCSTTCSHHHHTTT CS
      Cyt-b5   1 tleelskhngkn.dlwvairgkVYDvskflskhpGgesailkya 43 
                 t+e+ls+h+g + ++ + ++g   D +++l +hpGg++++++ya
  CDO73445.1 260 TAEQLSEHAGADdRCILLLEGYAVDATEYLAEHPGGHTILRRYA 303
                 789******777699999***********************998 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   4.8e-07    0.0043     136     221 ..      93     175 ..      27     178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.8e-07
  FA_desaturase 136 rllawlllllawlglwlalllllglalllwlvplllllfllalvl..nyveHyggdwgerqvetsasirsaswllnlltgnlnyHieH 221
                      + ++l+   ++  +l+ll+  +l + +++  ll+ l+++++ +  n + H+    g++++ + +++  ++ ll+l+t++ + H+ H
     CDO73445.1  93 ETVPLALITGFAIPPVLGLLWNEPLEA-FVYGSLLARLMVWHCTFlvNSLAHWD---GLQPYSDDNTSK-SNLLLALMTCGEGNHNFH 175
                    444444444444777788888887777.88888888888888887789999985...999999999999.*************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2527.16
//
Query:       CDO73446.1  [L=163]
Description: hypothetical protein BN946_scf185013.g81 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   14.0   0.0      0.067   13.4   0.0    1.3  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.7e-06     0.067      53     103 ..      19      72 ..       1      79 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-06
                 EEEETTSGHHHHHHHHHHHHHSEEEC-...CGGGHHHHHHHHHHHT-HHHHHHH CS
         BTB  53 eielddvepeafealLefiYtgeleit...seenleelLaaadllqiprlkkac 103
                  ++l++v++ +f++lL++ Y+  + +    + e+ +++L++ +l+++++  k++
  CDO73446.1  19 PVRLPEVQAVEFARLLSIFYPRDVVNGdlsTLEDWASVLRITHLYDFEEHRKLA 72 
                 4889******************99999888889999999999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1297.56
//
Query:       CDO73447.1  [L=461]
Description: hypothetical protein BN946_scf185013.g82 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-51  176.0   0.0    3.3e-46  158.0   0.0    2.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.9e-07    0.0033      13     163 ..      38     178 ..      35     201 .. 0.85
   2 !  158.0   0.0   1.9e-50   3.3e-46     216     444 ..     197     433 ..     180     454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-07
                 HHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHST CS
        p450  13 llqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgk 111
                 l +++r++ +h + ++l++++g+i+r+ +++ ++ + s   a + +++++g ++     + + a ++ +     ++  +++++ + R+  ++++    +
  CDO73447.1  38 LAWISRGGRRHIYTQELHRQFGDIVRVGPNEVSISMAS---ALHPLMGTSGLHKG----PQWGARAATQAVPPLIAIGDPKEHLRRRKPWNRAFNVA-S 128
                 678888999999**************998886666555...99999999984443....456666555678888999999999999*********99.8 PP

                 T.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHH CS
        p450 112 l.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfd 163
                 l  +e+lv   +++lv+ l +k+ge    ++++++s +++d +++ + +  f+
  CDO73447.1 129 LkDFEPLVANRTRQLVDLLGSKKGEV---NLSKWFSWYTYDLMSDMANSDTFG 178
                 889**********************9...9*******9999998877666555 PP

  == domain 2  score: 158.0 bits;  conditional E-value: 1.9e-50
                 HHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT- CS
        p450 216 lkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkrep 313
                 +k++  +++    e ++  ++s++d+  ++ ++  + +g+ +   ++++a      +aG+dTtss++s   + L+++Pe+ ++lr E+d    ++ + +
  CDO73447.1 197 MKEMRAFCMARTAERIKVGNHSTKDLFYYINNE--DGSGP-TPPLAQVVADGALAVVAGSDTTSSVISNLVFSLLTHPEAYARLRAEVDAFYpPGEDAL 292
                 555555666666666666655566655444444..56666.788888888888999************************************99999** PP

                 HHHHCCT-HHHHHHHHHHHHHSCS....STTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS.....CTESSCTT- CS
        p450 314 tyddlqklpyldavikEtLRlhpv....vplllpRevtkdvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg.....nskrksfaf 402
                 + ++ +++pyl+avi+Et+Rl+p+    +p llpR + ++v+ +   +p+Gt+v v +y++hrdp  f p Pe+F peR+  ++      +   +  af
  CDO73447.1 293 STKHHADMPYLNAVINETMRLYPPetggLPYLLPRSCASNVHKSRSYLPEGTIVTVHTYTIHRDPRNFsPFPESFWPERWILASSenpdvKLIHNAAAF 391
                 ***********************96666799*************************************************8888888999444799*** PP

                 -TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGG CS
        p450 403 lPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpp 444
                 +PF++Gp nC G++lA+ e+++++++++q+ ++ l ++ dp 
  CDO73447.1 392 FPFSFGPGNCAGKGLAMQEMRMVVTLMMQRLDMRLADGFDPA 433
                 ********************************9997665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3357.64
//
Query:       CDO73448.1  [L=581]
Description: hypothetical protein BN946_scf185013.g83 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-36  122.3   6.2    2.1e-19   69.3   0.3    2.6  3  Bromodomain  Bromodomain
  ------ inclusion threshold ------
      0.042   13.1   0.0      0.059   12.6   0.0    1.3  1  PIP5K        Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.5   4.4e-19     4e-15      20      83 ..       3      66 ..       1      67 [. 0.96
   2 ?   -3.4   0.0       1.2   1.1e+04      45      60 ..      70      85 ..      69      86 .. 0.85
   3 !   69.3   0.3   2.4e-23   2.1e-19       5      82 ..     122     201 ..     118     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 4.4e-19
                 TT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain 20 pvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83
                  ++++++pdyya ik+P+ L  Ik+kl+ ++Y s++++++d++  f Na++yn  +s+i+++a+
   CDO73448.1  3 LPSKRQYPDYYAQIKRPIALDDIKAKLDAREYASMEEVMQDFETCFRNAKRYNIRESQIWKDAK 66
                 4589*********************************************************996 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                 HHHTT--SSHHHHHHH CS
  Bromodomain 45 klesnkYksladfead 60
                 kl+ ++Y++++ + +d
   CDO73448.1 70 KLATKEYSRITGVNKD 85
                 88999***99998887 PP

  == domain 3  score: 69.3 bits;  conditional E-value: 2.4e-23
                  HHHBHTTT..CGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain   5 lsellehk..laepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82 
                  +++  ++   l++ F++ ++++++p yy+vikkP  L+ I kkl++++Y++++df +d++l+fsNa ++n+e ++i+e+a
   CDO73448.1 122 VTKTDDDGriLSSEFMDLPSRKQWPSYYQVIKKPQALENIFKKLKRKEYHNPTDFANDVELVFSNALEFNQEHTQIWEDA 201
                  55555555668999****************************************************************98 PP

>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.6e-06     0.059     141     194 ..      59     132 ..      30     291 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHTTB-S-EEEEEEEB---------------------------......................- CS
       PIP5K 141 eqlekDvefLeslnimDYSLLlGihnsekeekeekkesessssekesekseee......................a 194
                 +q+ kD +fL++l + +YS + G+++ + + + ++k  + ++ + +++    +                       
  CDO73448.1  59 SQIWKDAKFLHKLATKEYSRITGVNKDAPADDADDKAASDDDGDAKKKGP--NlhrllktklqklvtktdddgriL 132
                 6999********************66665555554444433333333322..133555555555554444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3744.29
//
Query:       CDO73449.1  [L=375]
Description: hypothetical protein BN946_scf185013.g84 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-37  128.7  10.5    1.9e-37  128.4  10.5    1.1  1  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4  10.5   1.1e-41   1.9e-37       4     133 ..      39     163 ..      36     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 1.1e-41
        DHHC   4 elkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvl 102
                 ++++C+tc+ ykppr++Hc++C+rcvlr+DHhCpw+nnc+G+ Ny +F+ fl+y+ l++ + +v+    +++ + ++++ + + +      + +l ++ 
  CDO73449.1  39 SPRYCRTCRNYKPPRAHHCSQCKRCVLRMDHHCPWVNNCVGHFNYGHFVRFLFYVDLACSYHFVMVARRVLSSTAYWDEPSGQELV-----FIVLNFAT 132
                 689****************************************************************************9999775.....45999999 PP

        DHHC 103 sllfllllgllllfhlylilrnlTtieamkk 133
                 ++ +ll +g++ l+h+y++++n+Ttie ++k
  CDO73449.1 133 CVPVLLAVGIFSLYHFYYLCTNTTTIEGWEK 163
                 ***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2876.08
//
Query:       CDO73450.1  [L=291]
Description: hypothetical protein BN946_scf185013.g85 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1997.36
//
Query:       CDO73451.1  [L=1039]
Description: hypothetical protein BN946_scf185013.g86 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-37  127.3   0.1    1.9e-36  125.2   0.1    2.1  1  Gar1      Gar1/Naf1 RNA binding region
     0.0015   18.6   5.2     0.0015   18.6   5.2    1.9  2  SAS4      Something about silencing, SAS, complex subunit 4
     0.0039   17.8   6.3     0.0039   17.8   6.3    4.0  4  PEHE      PEHE domain


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.1   3.1e-40   1.9e-36      12     152 ..     150     293 ..     144     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 3.1e-40
                 ----TTS-EEEEEEEEEEETTEEEEEE---.....S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GGHHHHHHHTTTTSEEEEE-X..X CS
        Gar1  12 ieigppeevleiGtvssivenevvikstts.....gekkvldfnsilflenktqiGkVdEifGpvnepyysVklnsseeikaksfkvgdkvyiapdlpl 105
                  e+gp+++++++G+v+siv++ v++k   s     g++k ld +++l +e+++++G ++E+fGp +ep+y V++n++  +  +++k+g +vy +p+   
  CDO73451.1 150 SEVGPHDTLEKVGEVMSIVDKVVIVKGVPSeianrGSEKALDSDTLLVFEDRKVLGYIFETFGPTSEPLYQVRFNQRYPLDTEKVKIGRTVYHVPE--R 246
                 5799**********************98661111134567********************************************************..* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 106 erfllteelkkkkgpdasnendeElpeeevefsdDekeaeakkkkkg 152
                 ++++++++l++ kg+dasn +deE+ e+e efsdDe+ea++k+   +
  CDO73451.1 247 SNYVFVRQLRQYKGSDASNVHDEEPAEDELEFSDDEQEAAHKRALAQ 293
                 ******************************************98776 PP

>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.3   1.4e+04       5      18 ..     280     293 ..     278     299 .. 0.64
   2 !   18.6   5.2   2.4e-07    0.0015       4      51 ..     642     689 ..     640     693 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.3
        SAS4   5 DklYekaHkrmerq 18 
                 D+  e+aHkr+  q
  CDO73451.1 280 DDEQEAAHKRALAQ 293
                 55557788887654 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.4e-07
        SAS4   4 sDklYekaHkrmerqEkrmrniekeraesEadrlerllekLqgqdwlr 51 
                 sD+ Yek H++ e  Ekr r +eke+ ++E  +l++ +++L+  d   
  CDO73451.1 642 SDAAYEKRHRKYETFEKRQRLREKEKLKHEHYKLKERIDQLRAMDSSA 689
                 699**************************************9887655 PP

>> PEHE  PEHE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6      0.88   5.2e+03      22      46 ..      79     104 ..      65     117 .. 0.57
   2 ?    2.1   0.3     0.048   2.8e+02      27      68 ..     278     319 ..     255     359 .. 0.63
   3 !   17.8   6.3   6.5e-07    0.0039      17      66 ..     631     680 ..     620     691 .. 0.72
   4 ?   -2.0   0.3      0.89   5.3e+03      66      66 ..     927     927 ..     886     990 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.88
        PEHE  22 s.eiEdlSDeaFakRHaklEekerkR 46 
                     E++SD++ +   + +Ee e+ R
  CDO73451.1  79 ApPSESTSDSDSSDSDSESEEGEQHR 104
                 22245566655555555555555444 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.048
        PEHE  27 lSDeaFakRHaklEekerkRwdlqrnreqqrreslrqRkesk 68 
                  SD+  ++ H++   ++r+   +++ + ++++  l +R++ +
  CDO73451.1 278 FSDDEQEAAHKRALAQRREQSRARSVSSSRHSTPLPSRMRDQ 319
                 566666667777765555555555555555555555554443 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 6.5e-07
        PEHE  17 seeeeseiEdlSDeaFakRHaklEekerkRwdlqrnreqqrreslrqRke 66 
                  +++ +e+ d+SD+a++kRH k+E  e+  +   +   ++++ +l++R +
  CDO73451.1 631 LPQDANETVDTSDAAYEKRHRKYETFEKRQRLREKEKLKHEHYKLKERID 680
                 4555566889**************66655556566666666777888855 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.89
        PEHE  66 e 66 
                 +
  CDO73451.1 927 K 927
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1230  (0.0686039); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.44
# Mc/sec: 7030.96
//
Query:       CDO73452.1  [L=139]
Description: hypothetical protein BN946_scf185013.g87 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 998.86
//
Query:       CDO73453.1  [L=285]
Description: hypothetical protein BN946_scf185013.g88 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2126.16
//
Query:       CDO73454.1  [L=108]
Description: hypothetical protein BN946_scf185013.g89 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-23   81.9  11.5    4.7e-23   81.6  11.5    1.1  1  Hydrophobin  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6  11.5   2.6e-27   4.7e-23       1      80 []      28     106 ..      28     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2.6e-27
  Hydrophobin   1 CntgevqCCnsvqkakdssavkkllgllglelkdltgqvgltCspinvvgvgggssCtqqpvCCennsfnglinlgCtpi 80 
                  Cntg++qCCn+vq++++ +a+++llg+l++ +++++g+vgl+C+pi+v+g  +g+ C+q+pvCC+n ++ng+i++gC+pi
   CDO73454.1  28 CNTGHIQCCNEVQQSHT-AAMQALLGVLDIPFQNVNGEVGLQCNPISVIGGLSGTDCSQHPVCCDNLQNNGVIGVGCVPI 106
                  *************9865.79******************************889**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 765.15
//
Query:       CDO73455.1  [L=128]
Description: hypothetical protein BN946_scf185013.g90 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 979.07
//
Query:       CDO73456.1  [L=974]
Description: hypothetical protein BN946_scf185013.g91 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-20   72.4   1.3    0.00012   21.9   0.0    5.5  5  Kelch_5         Kelch motif
    5.8e-20   71.1   7.9    2.5e-06   27.6   0.1    6.1  6  Kelch_3         Galactose oxidase, central domain
      1e-18   66.9   5.4    3.4e-07   30.3   0.3    5.6  5  Kelch_6         Kelch motif
    9.2e-17   60.8  10.8      1e-05   25.5   0.0    5.5  5  Kelch_4         Galactose oxidase, central domain
    1.4e-15   56.6   1.0    8.8e-05   22.0   0.3    4.8  5  Kelch_1         Kelch motif
    3.6e-14   52.1   8.3     0.0075   16.2   0.7    5.5  5  Kelch_2         Kelch motif
     0.0004   20.9   5.5     0.0004   20.9   5.5    4.6  3  Fez1            Fez1
    0.00086   17.6   7.2    0.00086   17.6   7.2    3.3  1  HOOK            HOOK protein
  ------ inclusion threshold ------
      0.011   15.5  15.4       0.12   12.3   0.1    4.2  3  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.11   13.0   0.3       0.11   13.0   0.3    7.4  4  ZapB            Cell division protein ZapB
       0.83    9.0  56.6         14    4.9   6.8    4.4  2  Tropomyosin     Tropomyosin
        1.3    9.5  25.0       0.25   11.8   3.4    4.9  4  FlaC_arch       Flagella accessory protein C (FlaC)
        2.4    8.3  24.9       0.67   10.1   2.0    5.2  4  bZIP_1          bZIP transcription factor
        2.6    7.7   5.6         38    4.0   0.2    3.2  3  Vac_Fusion      Chordopoxvirus multifunctional envelope prote


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00032      0.41       2      24 ..     200     225 ..     199     234 .. 0.88
   2 !   11.3   0.0    0.0002      0.26       1      22 [.     252     273 ..     252     296 .. 0.81
   3 !   14.7   0.0   1.8e-05     0.023       2      41 ..     315     352 ..     315     353 .. 0.84
   4 !   21.9   0.0   9.6e-08   0.00012       1      24 [.     364     387 ..     364     396 .. 0.93
   5 !    7.6   0.0     0.003       3.8       2      25 ..     416     439 ..     415     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
     Kelch_5   2 PppRaghca.v..tvsekiYvyGGkv 24 
                 P pR+gh+  v  t s++++++GG v
  CDO73456.1 200 PFPRYGHALpVnaTSSGELFLFGGLV 225
                 99*******8787789********98 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0002
     Kelch_5   1 iPppRaghcavtvsekiYvyGG 22 
                 iP+pR gh+++ v++ ++v+GG
  CDO73456.1 252 IPSPRVGHASALVGSVLIVWGG 273
                 7********************* PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.8e-05
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 Pp R++h  vt++eki+++GG +   +  ++d + +d+++
  CDO73456.1 315 PPKRTSHICVTYGEKIILFGGTDC--QYHYNDTWAFDTTN 352
                 99*******************993..44488888888765 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 9.6e-08
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkv 24 
                 iP+pR gh+a++v++ iYv+GG++
  CDO73456.1 364 IPSPREGHSAAMVDDVIYVFGGRG 387
                 7*********************86 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.003
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg 25 
                 P+pR+gh+++  ++ ++v GG +g
  CDO73456.1 416 PSPRSGHAMASMGSRVFVLGGLGG 439
                 9********************996 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.6     2e+03      35      45 ..     195     207 ..     184     208 .. 0.71
   2 !   18.9   0.0     1e-06    0.0013       3      47 ..     217     262 ..     215     264 .. 0.88
   3 ?    4.8   0.0     0.027        35      21      44 ..     291     321 ..     271     326 .. 0.82
   4 !   27.6   0.1   1.9e-09   2.5e-06       1      47 [.     327     374 ..     327     375 .. 0.92
   5 !   17.8   0.0   2.3e-06    0.0029       2      47 ..     378     425 ..     377     426 .. 0.88
   6 ?    0.1   0.0      0.82   1.1e+03       1      13 [.     428     443 ..     428     459 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
     Kelch_3  35 aslpp..aRagha 45 
                 +++p+  +R+gha
  CDO73456.1 195 SPSPSpfPRYGHA 207
                 3334478*****9 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1e-06
     Kelch_3   3 rlyifGGlgddgqdrlndvyvy...dldtntWaeiaslppaRaghaat 47 
                 +l++fGGl   + ++  d+y++   dl+++  +++++ p++R+gha++
  CDO73456.1 217 ELFLFGGLV--RDTVRIDLYLIsvrDLSATLLQTTGEIPSPRVGHASA 262
                 69*******..9999999999955666*99999*************97 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.027
     Kelch_3  21 vyvydldtn..tWaei.....aslppaRagh 44 
                 +y+++l+++  tW+ +     ++ pp R++h
  CDO73456.1 291 LYLLNLVRTkaTWELVepaegSPRPPKRTSH 321
                 899***88888***77767755569999999 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 1.9e-09
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaat 47 
                 g+++ +fGG +   q ++nd++++d+ +ntW+e+   +  p++R gh+a+
  CDO73456.1 327 GEKIILFGGTD--CQYHYNDTWAFDTTNNTWTELnciGFIPSPREGHSAA 374
                 67899******..77777**************9999999*********86 PP

  == domain 5  score: 17.8 bits;  conditional E-value: 2.3e-06
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWa...eiaslppaRaghaat 47 
                 d +y+fGG+g d ++ l+d+ ++ +++  W    + ++ p++R+gha++
  CDO73456.1 378 DVIYVFGGRGVD-GKDLGDLGAFKISNQRWYmfqKMGPAPSPRSGHAMA 425
                 789*******87.999**********9988866466***********97 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.82
     Kelch_3   1 gdrlyifGGlgd...d 13 
                 g r+++ GGlg+   +
  CDO73456.1 428 GSRVFVLGGLGGeslN 443
                 5789*******54333 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.034        44       8      49 ..     212     255 ..     202     256 .. 0.71
   2 ?    4.1   0.1     0.048        62       1      24 [.     255     285 ..     255     314 .. 0.69
   3 !   30.3   0.3   2.6e-10   3.4e-07       2      50 .]     318     368 ..     317     368 .. 0.87
   4 !   15.0   0.0   1.7e-05     0.022       1      40 [.     367     406 ..     367     413 .. 0.91
   5 !   12.1   0.0   0.00014      0.18       1      22 [.     418     439 ..     418     450 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.034
     Kelch_6   8 vsvggkiYifGGytdsspylnkvwvydpetksWeqlp...plpvp 49 
                 ++  g +++fGG++  ++   +++++++++ s + l+    +p p
  CDO73456.1 212 ATSSGELFLFGGLVR-DTVRIDLYLISVRDLSATLLQttgEIPSP 255
                 456678*********.89999******999987766532256655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.048
     Kelch_6   1 praghslvsvggkiYifGGytds.......s 24 
                 pr+gh++++vg+ + ++GG t         +
  CDO73456.1 255 PRVGHASALVGSVLIVWGGDTKTsskskaaD 285
                 699*****************98655544443 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 2.6e-10
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWeq...lpplpvpr 50 
                 r++h +v++g+ki +fGG ++   ++n+ w +d  +++W++   ++ +p pr
  CDO73456.1 318 RTSHICVTYGEKIILFGGTDC-QYHYNDTWAFDTTNNTWTElncIGFIPSPR 368
                 899******************.69*****************44335777666 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 1.7e-05
     Kelch_6   1 praghslvsvggkiYifGGytdsspylnkvwvydpetksW 40 
                 pr ghs++ v++ iY+fGG++ +++ l ++  + +++ +W
  CDO73456.1 367 PREGHSAAMVDDVIYVFGGRGVDGKDLGDLGAFKISNQRW 406
                 5779*****************9999999999999999999 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 0.00014
     Kelch_6   1 praghslvsvggkiYifGGytd 22 
                 pr gh+++s+g++++++GG+++
  CDO73456.1 418 PRSGHAMASMGSRVFVLGGLGG 439
                 699****************987 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00061      0.78       1      38 [.     202     240 ..     202     253 .. 0.81
   2 ?    0.7   0.3      0.42   5.4e+02       1      22 [.     255     275 ..     255     316 .. 0.72
   3 !   24.6   1.0   1.4e-08   1.8e-05       8      44 ..     323     358 ..     318     367 .. 0.81
   4 !   25.5   0.0   7.8e-09     1e-05       1      49 []     367     417 ..     367     417 .. 0.94
   5 ?    2.1   0.0      0.16     2e+02       1      24 [.     418     440 ..     418     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00061
     Kelch_4   1 pRaghs..atsipdgtiylfGGrgedgtllndlylldlst 38 
                 pR gh+  + ++ +g+++lfGG   d t+  dlyl+++ +
  CDO73456.1 202 PRYGHAlpVNATSSGELFLFGGLVRD-TVRIDLYLISVRD 240
                 78888833444578***********9.8******998866 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
     Kelch_4   1 pRaghsatsipdgtiylfGGrg 22 
                 pR+gh++  ++   ++++GG +
  CDO73456.1 255 PRVGHASALVG-SVLIVWGGDT 275
                 89999999996.6888899854 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 1.4e-08
     Kelch_4   8 tsipdgtiylfGGrgedgtllndlylldlstntWrrl 44 
                 +++++ +i+lfGG   +   +nd++++d+++ntW++l
  CDO73456.1 323 CVTYGEKIILFGGTDCQ-YHYNDTWAFDTTNNTWTEL 358
                 4455679**********.7***************998 PP

  == domain 4  score: 25.5 bits;  conditional E-value: 7.8e-09
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntW...rrlgslPs 49 
                 pR ghsa  + d+ iy+fGGrg dg+ l+dl ++ +s+ +W   +++g++Ps
  CDO73456.1 367 PREGHSAAMV-DDVIYVFGGRGVDGKDLGDLGAFKISNQRWymfQKMGPAPS 417
                 6778999999.69***********************************9997 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.16
     Kelch_4   1 pRaghsatsipdgtiylfGGrged 24 
                 pR gh++ s +  ++++ GG g++
  CDO73456.1 418 PRSGHAMASMG-SRVFVLGGLGGE 440
                 899*******6.7*******9985 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         2   2.5e+03       7      20 ..     211     224 ..     207     230 .. 0.81
   2 ?    0.6   0.0      0.34   4.3e+02       1      22 [.     255     276 ..     255     306 .. 0.87
   3 !   22.0   0.3   6.8e-08   8.8e-05       2      42 ..     318     358 ..     317     360 .. 0.92
   4 !   14.4   0.0   1.7e-05     0.022       1      28 [.     367     395 ..     367     413 .. 0.74
   5 !   13.5   0.0   3.2e-05     0.041       1      27 [.     418     443 ..     418     459 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
                 EEEETTEEEEEEEB CS
     Kelch_1   7 avvvggkiYviGGs 20 
                  ++  g+++ +GG 
  CDO73456.1 211 NATSSGELFLFGGL 224
                 578889******96 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.34
                 BBBSEEEEEETTEEEEEEEBCS CS
     Kelch_1   1 aragagavvvggkiYviGGsdg 22 
                 +r g++++ vg  + v GG   
  CDO73456.1 255 PRVGHASALVGSVLIVWGGDTK 276
                 799*************999876 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 6.8e-08
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpetntWrel 42 
                 r+ + +v+ g+ki  +GG d +   ++ +++D+++ntW+el
  CDO73456.1 318 RTSHICVTYGEKIILFGGTDCQYHYNDTWAFDTTNNTWTEL 358
                 556669*********************************98 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.7e-05
                 BBBSEEEEEETTEEEEEEEBCS.SSBEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg.gnalss 28 
                 +r g++a+ v++ iYv+GG+   g+ l +
  CDO73456.1 367 PREGHSAAMVDDVIYVFGGRGVdGKDLGD 395
                 6889***************9766555555 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 3.2e-05
                 BBBSEEEEEETTEEEEEEEBCSSSBEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnals 27 
                 +r+g++++++g +++v+GG  g ++l+
  CDO73456.1 418 PRSGHAMASMGSRVFVLGGLGG-ESLN 443
                 7******************999.5555 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.93   1.2e+03      10      27 ..     214     228 ..     202     237 .. 0.67
   2 !    9.2   0.0   0.00098       1.2       1      19 [.     255     273 ..     255     282 .. 0.95
   3 !   16.2   0.7   5.9e-06    0.0075       2      49 .]     318     362 ..     317     362 .. 0.89
   4 !   14.3   0.0   2.3e-05     0.029       2      30 ..     368     394 ..     367     412 .. 0.71
   5 !   12.0   0.0   0.00013      0.17       1      24 [.     418     445 ..     418     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.93
     Kelch_2  10 pggkiyvvGGahtdnpnl 27 
                 + g ++++GG      + 
  CDO73456.1 214 SSGELFLFGGL---VRDT 228
                 4799******8...5544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00098
     Kelch_2   1 rrgghsssvpggkiyvvGG 19 
                 +r+gh+s+ +g+ ++v+GG
  CDO73456.1 255 PRVGHASALVGSVLIVWGG 273
                 79****************9 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 5.9e-06
     Kelch_2   2 rgghsssvpggkiyvvGGa...htdnpnlsssdvhvldlekhvWeevtplg 49 
                 r  h++++ g ki+++GG    +++      +d + +d+  ++W+e++++g
  CDO73456.1 318 RTSHICVTYGEKIILFGGTdcqYHY------NDTWAFDTTNNTWTELNCIG 362
                 678****************887555......699999************87 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 2.3e-05
     Kelch_2   2 rgghsssvpggkiyvvGGa...htdnpnlsss 30 
                 r ghs++++++ iyv+GG+   +         
  CDO73456.1 368 REGHSAAMVDDVIYVFGGRgvdG-----KDLG 394
                 669****************4442.....3333 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00013
     Kelch_2   1 rrgghsssvpggkiyvvGGa....htdn 24 
                 +r+gh+++++g++++v GG      +  
  CDO73456.1 418 PRSGHAMASMGSRVFVLGGLggesLNTQ 445
                 79******************75444444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   4.1       7.3   9.4e+03     115     146 ..      24      55 ..       4      63 .. 0.42
   2 ?   -1.2   7.7       1.8   2.3e+03      68     149 ..     520     596 ..     487     619 .. 0.58
   3 !   20.9   5.5   3.1e-07    0.0004      13     145 ..     795     948 ..     791     959 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.3
        Fez1 115 lesdeakaqrqeaeeleelkreverlraeLke 146
                 +++  a+ q+q +++ ++ +++ ++ ++ L++
  CDO73456.1  24 ASAALAQIQQQPQTQPQQQQQQQQQSQKPLSK 55 
                 22222333333334444444444444444444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
        Fez1  68 levcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.lesdeakaqrqeaeeleelkreverlraeLkeerq 149
                   + e+el+ + ++ ++ + kv+++  +lk+l+ +++++ +e++++a  + +  +a+r +a++     +e +  ra+L+  + 
  CDO73456.1 520 YAESEEELASRADDDDIDSRKVTEMVINLKQLKAKIQATVAERAKEAsDRVQ--EAERLRASA----VQEAAFYRAKLAALES 596
                 6678999999999999999999**9999**9999999866554443311111..222222222....2222233333333333 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 3.1e-07
        Fez1  13 slLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleee 111
                 ++L +QL d+q +v++  ++  +l++++  l+++le+  +++  ++ +++e+   +e +e+e++r ++   + r   ++ e+ l++l +e ++l++e+e
  CDO73456.1 795 AFLQNQLADAQRQVSRLNGDNRELRNRIDSLEQDLEHMRDNVLAVQRESDERLSRIEDLEQEVERLQNALVVARG--GHGETMLEQLSNENTTLKRENE 891
                 5799**************************************************************665555554..4444444444444444443333 PP

        Fez1 112 eaa.......................lesdeakaqrqeaeeleelkreverlraeLk 145
                 + +                       +e +++    ++a + e+l++e++  +++L+
  CDO73456.1 892 QLShkielllavdqppfnagrpvsgfSERRASTSSSENAMAFEHLSSELDDWQRQLA 948
                 333344455566666667776665543333333333344555555555555555554 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   7.2   6.7e-07   0.00086     478     580 ..     792     896 ..     781     904 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.7e-07
        HOOK 478 ekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaedssllkkkleehleklkevq..eelqkkkeqleelepklssnkqki 574
                    + lq++l da+r++++L+ +nr  ++ri +Le+ +e ++ +  + + ++++  +  ++le+ +e+l+++   +   + + +le+l+++ ++ k+ +
  CDO73456.1 792 AGNAFLQNQLADAQRQVSRLNGDNRELRNRIDSLEQDLEHMRDNVLAVQRESDERLSRIEDLEQEVERLQNALvvARGGHGETMLEQLSNENTTLKREN 890
                 556679**************************************9999999999888888999999988876411344456677888888777777777 PP

        HOOK 575 eeleea 580
                 e+l ++
  CDO73456.1 891 EQLSHK 896
                 777665 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   9.4e-05      0.12       5      21 ..     605     621 ..     604     623 .. 0.84
   2 ?    6.4   1.9    0.0067       8.6       5      19 ..     817     831 ..     816     835 .. 0.83
   3 ?    3.3   1.7     0.063        81       8      16 ..     848     856 ..     843     859 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.4e-05
  Pox_A_type_inc   5 rlRsRIsDLErqLseCr 21 
                     ++R+RI DLErq s+++
      CDO73456.1 605 AERERIADLERQISAAL 621
                     79**********88765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0067
  Pox_A_type_inc   5 rlRsRIsDLErqLse 19 
                     +lR+RI +LE+ L+ 
      CDO73456.1 817 ELRNRIDSLEQDLEH 831
                     7**********9985 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.063
  Pox_A_type_inc   8 sRIsDLErq 16 
                     sRI+DLE++
      CDO73456.1 848 SRIEDLEQE 856
                     8******98 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   5.0       7.3   9.3e+03      36      60 ..      27      51 ..      18      55 .. 0.63
   2 ?    1.3   2.8      0.37   4.7e+02       6      48 ..     725     767 ..     722     771 .. 0.84
   3 ?    1.4   8.7      0.35   4.5e+02      23      60 ..     797     834 ..     794     868 .. 0.59
   4 ?   13.0   0.3   8.6e-05      0.11      20      46 ..     876     931 ..     873     950 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.3
        ZapB 36 elkeenreleeeneqlkeereawqe 60
                +l++ +++ + + +q ++++++ q+
  CDO73456.1 27 ALAQIQQQPQTQPQQQQQQQQQSQK 51
                5556566666666666666666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.37
        ZapB   6 LeqLEskiqkaidtitlLqmeieeLkeeneelkeenreleeen 48 
                 L+qLE+ +q a+  +++  + ++++kee  + k  n+ +++e+
  CDO73456.1 725 LSQLEEDYQLAVHYVKATEKTMRKMKEELTKQKTLNQSMQAEI 767
                 8999999999999999999999999999888888888888776 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.35
        ZapB  23 LqmeieeLkeeneelkeenreleeeneqlkeereawqe 60 
                 Lq+++++ +++++ l+  nrel+  ++ l+++ e +++
  CDO73456.1 797 LQNQLADAQRQVSRLNGDNRELRNRIDSLEQDLEHMRD 834
                 66666666666666666666666555555544443332 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 8.6e-05
        ZapB  20 itlLqmeieeLkeeneelkeenrele.............................e 46 
                 +++L++e+  Lk+ene+l+ +++ l                               
  CDO73456.1 876 LEQLSNENTTLKRENEQLSHKIELLLavdqppfnagrpvsgfserrastsssenaM 931
                 689******************99998777766666666666666555555544444 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  41.8     0.018        22       3     229 ..     548     769 ..     547     771 .. 0.87
   2 ?    4.9   6.8     0.011        14     128     212 ..     807     889 ..     789     901 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
  Tropomyosin   3 lkqveeeld.eaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleelea 99 
                  lkq++ +++ ++ er+++a ++++eae+ +++a +E+a  + ++  le+  ++   r e+        e+ ad + ++  +l + + + + k++el++
   CDO73456.1 548 LKQLKAKIQaTVAERAKEASDRVQEAERLRASAVQEAAFYRAKLAALESSSDNDVGRAER--------ERIADLERQISAAL-SGQVERDRKIKELNE 636
                  57778887625789**********************************999987777665........56666666666666.456788899999999 PP

  Tropomyosin 100 qlkeakeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvvgnnl...ksLevseekaseredeyeeeirtLeekLkeaeeRaee 194
                  +l+  + + e+a+ + + ++++   + +  er  e + +  ++ v Le  L+  +++l    sL  + e+ + + ++  ee+   +++L + ee ++ 
   CDO73456.1 637 SLSLQTTLLEQAEARADDASKRADTLAQSHERDAEEQTTLRERNVLLETMLREQSEKLleqTSLADQREADYVKAQSQLEELLHYKARLSQLEEDYQL 734
                  999999999999999999999999999999998888888888888999999999988744458999999999999999999***************** PP

  Tropomyosin 195 AErsvqkLekevdrledeleaekekykaiseeLdq 229
                  A   v+  ek++ ++ +el+++k  ++++++e+d+
   CDO73456.1 735 AVHYVKATEKTMRKMKEELTKQKTLNQSMQAEIDR 769
                  ********************************995 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
  Tropomyosin 128 dLeraeeraeaaeskiveLeeeLkvvgnnlksLevseekaseredeyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrlede 212
                  ++ r +   ++  ++i +Le++L+ +  n+   + ++++   r ++ e+e++ L++ L   ++R  + E  +++L +e+ +l  e
   CDO73456.1 807 QVSRLNGDNRELRNRIDSLEQDLEHMRDNVLAVQRESDERLSRIEDLEQEVERLQNAL--VVARGGHGETMLEQLSNENTTLKRE 889
                  4444444455666777777777777777777777777777777777777777777777..4556777777777777776666555 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.38   4.9e+02       1      35 [.     630     664 ..     630     668 .. 0.93
   2 ?   -0.0   1.5      0.92   1.2e+03       3      31 ..     740     768 ..     739     769 .. 0.87
   3 ?   11.8   3.4   0.00019      0.25       1      40 [.     821     860 ..     821     862 .. 0.97
   4 ?    8.3   0.7    0.0023       2.9       6      31 ..     873     898 ..     871     901 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.38
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelke 35 
                 +i+el + ls   t le +++  ++ sk  ++l +
  CDO73456.1 630 KIKELNESLSLQTTLLEQAEARADDASKRADTLAQ 664
                 89*************************99999887 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.92
   FlaC_arch   3 delEnklsklsteletvkkeneelsksve 31 
                 +  E+ + k++ el+  k+ n++++ +++
  CDO73456.1 740 KATEKTMRKMKEELTKQKTLNQSMQAEID 768
                 566999****************9999987 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00019
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVkdl 40 
                 rid+lE++l+ +  ++  v++e +e  + +e+l+++V++l
  CDO73456.1 821 RIDSLEQDLEHMRDNVLAVQRESDERLSRIEDLEQEVERL 860
                 9************************************987 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0023
   FlaC_arch   6 Enklsklsteletvkkeneelsksve 31 
                 E+ l++ls e +t+k+ene+ls ++e
  CDO73456.1 873 ETMLEQLSNENTTLKRENEQLSHKIE 898
                 778999*****************998 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   3.9       2.5   3.2e+03      35      62 ..     739     766 ..     722     768 .. 0.77
   2 ?   10.0   0.3   0.00057      0.73      32      63 ..     805     836 ..     798     837 .. 0.90
   3 ?    0.7   0.3      0.43   5.6e+02      25      40 ..     847     862 ..     841     864 .. 0.83
   4 ?   10.1   2.0   0.00052      0.67      35      59 ..     876     900 ..     873     903 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  35 vkaLekeNksLkseleelkkevekLksk 62 
                 vka ek + ++k+el + k  +++++ +
  CDO73456.1 739 VKATEKTMRKMKEELTKQKTLNQSMQAE 766
                 7888999999999999999999998766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  32 errvkaLekeNksLkseleelkkevekLkskv 63 
                 +r+v+ L++ N +L++++++l+ + e ++++v
  CDO73456.1 805 QRQVSRLNGDNRELRNRIDSLEQDLEHMRDNV 836
                 6899************************9876 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHHHH CS
      bZIP_1  25 qaeieeLerrvkaLek 40 
                   +ie Le++v+ L++
  CDO73456.1 847 LSRIEDLEQEVERLQN 862
                 5689999999999976 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  35 vkaLekeNksLkseleelkkevekL 59 
                  ++L++eN++Lk e+e+l+ ++e L
  CDO73456.1 876 LEQLSNENTTLKRENEQLSHKIELL 900
                 689999**********999999855 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.03        38       7      33 ..     723     749 ..     718     763 .. 0.90
   2 ?    3.1   0.4     0.057        74      23      49 ..     815     841 ..     800     845 .. 0.84
   3 ?    3.9   1.3     0.033        42       3      34 ..     816     851 ..     814     866 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Vac_Fusion   7 erllvlekdfqlvikcckrvnealkRl 33 
                  rl +le+d+ql +   k +++ ++ +
  CDO73456.1 723 ARLSQLEEDYQLAVHYVKATEKTMRKM 749
                 69********************99876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.057
                 HHHHHHHHHHHH-XXXXXXXXXXXXXX CS
  Vac_Fusion  23 ckrvnealkRlEnHleTlRkamlaLak 49 
                  ++  ++++ lE+ le +R + la ++
  CDO73456.1 815 NRELRNRIDSLEQDLEHMRDNVLAVQR 841
                 578899***************998776 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHH CS
  Vac_Fusion   3 kdleerllvlekdfqlvikc....ckrvnealkRlE 34 
                 ++l +r+ +le+d +++ ++    +++++e+l+R+E
  CDO73456.1 816 RELRNRIDSLEQDLEHMRDNvlavQRESDERLSRIE 851
                 566777777777766554432222678888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2542  (0.141781); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.24u 0.34s 00:00:01.58 Elapsed: 00:00:00.51
# Mc/sec: 5712.28
//
Query:       CDO73457.1  [L=1482]
Description: hypothetical protein BN946_scf185013.g92 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-63  210.9  23.9    4.3e-15   55.8   0.4   10.9 10  S1             S1 RNA binding domain
    3.3e-08   33.9   0.0      0.012   16.1   0.0    3.7  4  TPR_19         Tetratricopeptide repeat
    1.3e-05   24.6  10.2     0.0057   15.8   1.1    3.4  3  NRDE-2         NRDE-2, necessary for RNA interference
    1.3e-05   25.6   0.0       0.47   11.4   0.0    4.6  4  TPR_14         Tetratricopeptide repeat
    4.8e-05   23.5  12.2    0.00062   19.8   0.0    3.8  2  Suf            Suppressor of forked protein (Suf)
    6.7e-05   23.5   0.0       0.24   12.1   0.0    2.9  2  TPR_16         Tetratricopeptide repeat
     0.0001   22.3   4.5         20    5.4   0.0    7.2  7  S1_2           S1 domain
    0.00022   20.6   2.0     0.0073   15.6   0.3    2.6  2  TPR_15         Tetratricopeptide repeat
    0.00071   19.5  14.8      0.004   17.1   0.1    6.9  8  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
     0.0017   18.6   0.0     0.0074   16.5   0.0    2.1  2  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
     0.0019   18.4   0.2        2.6    8.4   0.0    3.4  3  TPR_12         Tetratricopeptide repeat
      0.002   17.7   1.1       0.36   10.4   0.1    4.1  5  DUF2110        Uncharacterized protein conserved in archaea (
     0.0029   18.1   0.0         11    6.9   0.0    3.8  3  TPR_6          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.036   13.9   0.3        7.4    6.5   0.0    3.3  3  CSD            'Cold-shock' DNA-binding domain
      0.059   13.5   0.2         14    6.1   0.0    3.8  3  TPR_2          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0033         4       4      41 ..     126     173 ..     123     216 .. 0.77
   2 !   10.4   0.0   0.00053      0.63       8      65 ..     259     315 ..     253     324 .. 0.88
   3 !    6.4   0.0    0.0095        11       5      61 ..     346     398 ..     344     399 .. 0.92
   4 !   20.3   0.1   4.2e-07    0.0005       4      44 ..     440     481 ..     438     495 .. 0.88
   5 !   31.7   0.1   1.2e-10   1.5e-07       2      74 ..     529     600 ..     528     601 .. 0.92
   6 !   19.1   0.0     1e-06    0.0012       3      75 .]     619     690 ..     617     690 .. 0.95
   7 !   15.5   0.2   1.4e-05     0.016       4      56 ..     708     763 ..     706     779 .. 0.88
   8 !   20.9   0.0   2.9e-07   0.00035       3      75 .]     802     872 ..     800     872 .. 0.96
   9 !   30.1   0.3   3.9e-10   4.7e-07       2      74 ..     895     966 ..     894     967 .. 0.96
  10 !   55.8   0.4   3.6e-18   4.3e-15       3      74 ..     985    1059 ..     983    1060 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0033
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS..........C CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrd..........a 41 
                 +g  + G V+ v++ +++V + n   + vp+ ++s            +
  CDO73457.1 126 VGMKILGQVVAVEPLALIVSIPNQLFAHVPITQISTQlthilesmddV 173
                 688899*****************************9866665555550 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00053
                 EEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEET CS
          S1   8 veGeVtsvtkgGafVelg.ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdk 65 
                 +++ ++sv+++G + +lg  +v+gf++ ++   +   +d +++l+vG  ++v v+k+  
  CDO73457.1 259 LTASIKSVEDHGYILDLGiPDVSGFLSFKDAQ-K-GPFDTEKKLHVGRLLDVTVTKMSG 315
                 7899*************************988.4.799***************999865 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0095
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEE CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvl 61 
                 g+ v+  Vt v ++G++ ++++  +g v   +l+      dp+++ kvG++vk+++l
  CDO73457.1 346 GALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLPPG----DPEKHHKVGQKVKARIL 398
                 7788999***********************999965....9*************996 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 4.2e-07
                 TTCEEEE.EEEEEET.TEEEEEETTTEEEEEEGGGSSSSCEES CS
          S1   4 kgevveG.eVtsvtk.gGafVelgngvegfvpaselsrdarve 44 
                 +g+++e+ +V++v+   G+ V++g ++egfv++s+++++ +v+
  CDO73457.1 440 VGTILEAvKVVRVESeRGLVVDVGSDAEGFVHISQVADE-HVP 481
                 5667776369***9999********************99.765 PP

  == domain 5  score: 31.7 bits;  conditional E-value: 1.2e-10
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsi 74 
                 +++gev++G+V+++t+ ++fV + ++v+g v  ++ ++  + ++p +++k+G  +k +vl vd +r+ri+l+ 
  CDO73457.1 529 VQVGEVIKGTVKKLTDSALFVSISGNVDGVVWPNHYADI-TLKHPQKRFKPGGSIKCRVLVVDPERKRIALTA 600
                 689****************************77777765.7789**************************986 PP

  == domain 6  score: 19.1 bits;  conditional E-value: 1e-06
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++g v  ++V++v+++ + Ve+ n+ ++ vpa e s     ++    + vG++v v+++ vd +++ri  si+
  CDO73457.1 619 QIGVVTHAVVFKVSEKSLQVEFYNNLKAIVPAREASET-ALPSLPAAFPVGKPVQVRITAVDPETGRITASIR 690
                 6788999*****************************99.99***************************99986 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 1.4e-05
                 TTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS..CEESCHHHCEETTEEE CS
          S1   4 kgevveGeVtsvtkgGafVelg.ngvegfvpaselsrd..arvedpdevlkvGdev 56 
                 +g++veG+V ++ k+ a V l    v++++++ +l+++  ++v +   +lkvGd++
  CDO73457.1 708 IGDIVEGVVHDIRKDKAVVTLQpTQVTALLSLTNLANRreVSVAQLRSTLKVGDRL 763
                 79************************************887777888899999986 PP

  == domain 8  score: 20.9 bits;  conditional E-value: 2.9e-07
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 + g+ v G V + +++Ga + l n v+g ++  + ++d  +e+++    v+  +k+ vl vdk+rr ++ls++
  CDO73457.1 802 QPGQLVGGRVLRHNRHGALIKLTNSVTGILHPTDAADD--YENGKPFPPVDSVLKATVLSVDKERRQLRLSTR 872
                 78999*******************************98..9******************************96 PP

  == domain 9  score: 30.1 bits;  conditional E-value: 3.9e-10
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsi 74 
                 +++ge + G ++sv ++G+fV lg ++++ v ++el +d  v+d + ++ v++ vk ++l vd +++ + +s 
  CDO73457.1 895 LKVGETIRGFIKSVAEHGLFVTLGRDIDARVQIKELFDD-YVKDWKSRFAVNQLVKGRILSVDPEKKQVEMSF 966
                 589************************************.9**************************998885 PP

  == domain 10  score: 55.8 bits;  conditional E-value: 3.6e-18
                  TTTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS..CEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1    3 ekgevveGeVtsvtkgGafVelg.ngvegfvpaselsrd..arvedpdevlkvGdevkvkvlkvdkdrrriilsi 74  
                   +g+ v+G V++v+++G+f+e++  + +g++++sels++  a+v    + +++Gd+vk+++l vdk++rri++ +
  CDO73457.1  985 SEGQKVDGRVKKVEDYGLFIEIEgSKLSGLCHKSELSDNkdADVTLALRSFREGDKVKAVILSVDKEKRRISFGL 1059
                  589************************************888888899************************986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00018      0.22      14      53 ..    1218    1257 ..    1209    1260 .. 0.93
   2 !    7.2   0.0    0.0059       7.1      19      66 ..    1295    1342 ..    1290    1344 .. 0.88
   3 !   16.1   0.0     1e-05     0.012       5      52 ..    1315    1362 ..    1311    1376 .. 0.89
   4 ?    5.5   0.0      0.02        24       2      57 ..    1346    1403 ..    1345    1410 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      TPR_19   14 leqalqedpknaearllLAeallalgqldeAealLdalpe 53  
                  +e++l  +p++++++++++  +l+  ++d+A+++ +++++
  CDO73457.1 1218 FERLLLGSPNSSYLWIQYMSFQLQISEIDKAREIAKRALK 1257
                  899999****************************999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0059
      TPR_19   19 qedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66  
                  +  +++  + l++Ae+  ++  +++Ae+  ++  +++ +++ +++L A
  CDO73457.1 1295 ARHNDSKTVHLRMAEIFEQSDKPEKAEEQFKRTVKKFSQSSKVWTLFA 1342
                  4567788999***************************99999999865 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 1e-05
      TPR_19    5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52  
                   +++ A + +++  ++  +++ ++ l Ae +l+ g ++eA++lL + +
  CDO73457.1 1315 DKPEKAEEQFKRTVKKFSQSSKVWTLFAEHYLKRGMVEEARKLLPRSL 1362
                  57899**************************************96655 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.02
      TPR_19    2 laegdyaeAlalleqalqedpk..naearllLAeallalgqldeAealLdalpeedpd 57  
                  l++g  +eA +ll + lq   k  ++      A++ ++lg+++  + + + + ++ p+
  CDO73457.1 1346 LKRGMVEEARKLLPRSLQSLEKrkHLKTICKFAQLEYKLGDPERGKTIFEGIVDSHPK 1403
                  78899999999999999886662255555589*******************9999998 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.4   0.00022      0.26      86     142 ..    1213    1266 ..    1190    1276 .. 0.85
   2 !   15.8   1.1   4.8e-06    0.0057      56     140 ..    1289    1370 ..    1285    1381 .. 0.87
   3 ?    2.5   0.1     0.055        66      83     133 ..    1386    1433 ..    1377    1480 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
      NRDE-2   86 klakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsaklegr 142 
                  + ++ +e+ll  +pns  LW++y++f+++     +++k +e+++++l+t++ + e++
  CDO73457.1 1213 ESNADFERLLLGSPNSSYLWIQYMSFQLQ---ISEIDKAREIAKRALKTINFREEQE 1266
                  457889999*****************999...55899***********999887765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.8e-06
      NRDE-2   56 kAleknksnpdserLllelLklgseiwdseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsakle 140 
                  + ++ +++++ds+++ l++ ++ ++ +++ek ++++++++k+ ++s k+W+ + ++ ++   +  ve+ ++l+ + l++l+++++
  CDO73457.1 1289 STFKDAARHNDSKTVHLRMAEIFEQSDKPEKAEEQFKRTVKKFSQSSKVWTLFAEHYLK---RGMVEEARKLLPRSLQSLEKRKH 1370
                  55555556669*****************************************9999998...66799999999999999998865 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.055
      NRDE-2   83 dseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclr 133 
                  d+e+ ++ +e ++ ++p+  ++W  y+d++ ++     + ++++l++++l+
  CDO73457.1 1386 DPERGKTIFEGIVDSHPKRWDMWSIYIDMEAGQN---DIMSLRNLFNRVLA 1433
                  5556666678889999999999999999998844...44445555555443 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0       0.1   1.2e+02       3      30 ..    1231    1258 ..    1230    1276 .. 0.86
   2 !   11.4   0.0   0.00039      0.47       4      42 ..    1304    1342 ..    1302    1344 .. 0.93
   3 ?    1.0   0.0      0.87     1e+03       6      24 ..    1340    1358 ..    1337    1363 .. 0.85
   4 ?    3.9   0.0       0.1   1.2e+02       8      38 ..    1378    1408 ..    1376    1414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
      TPR_14    3 allalaeallalGdpdeAiallrralal 30  
                  ++ ++ ++ l+  + d+A+++++ral++
  CDO73457.1 1231 LWIQYMSFQLQISEIDKAREIAKRALKT 1258
                  588999999999**************95 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00039
      TPR_14    4 llalaeallalGdpdeAiallrralalaPddaeawllla 42  
                  +l++ae+++++++p++A++ ++r ++++ ++  +w+l a
  CDO73457.1 1304 HLRMAEIFEQSDKPEKAEEQFKRTVKKFSQSSKVWTLFA 1342
                  789*******************************99877 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.87
      TPR_14    6 alaeallalGdpdeAiall 24  
                  + ae +l +G  +eA++ll
  CDO73457.1 1340 LFAEHYLKRGMVEEARKLL 1358
                  56899************98 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.1
      TPR_14    8 aeallalGdpdeAiallrralalaPddaeaw 38  
                  a++++ lGdp++  ++++ +++ +P+ ++ w
  CDO73457.1 1378 AQLEYKLGDPERGKTIFEGIVDSHPKRWDMW 1408
                  788999********************99998 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   1.9    0.0014       1.6       1     145 [.    1229    1373 ..    1229    1376 .. 0.81
   2 !   19.8   0.0   5.2e-07   0.00062      41     122 ..    1377    1457 ..    1375    1471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
         Suf    1 tlvwikymrasrRaeGikgaRkvFkkARkk.....prltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvl 92  
                  ++ wi+ym +   ++ i +aR++ k+A k+     ++ + +v++a+  lE +   d++     F  ++++  ++    l+  +   + ++ ++a   
  CDO73457.1 1229 SYLWIQYMSFQLQISEIDKAREIAKRALKTinfreEQEKLNVWIALLNLENVYGTDES-LESTFKDAARHNDSKTV-HLRMAEIFEQSDKPEKAEEQ 1323
                  678***********************98762222144567899999999999999999.67788888887666555.46778889999999999999 PP

         Suf   93 fekvvsklskekeakelykkfleyestfgdlssilklekRmeelfpedskleq 145 
                  f ++v+k+s+     ++++ f+e   + g +++  kl  R  + +++ ++l+ 
  CDO73457.1 1324 FKRTVKKFSQSS---KVWTLFAEHYLKRGMVEEARKLLPRSLQSLEKRKHLKT 1373
                  999999999988...99999999999999999999999988888888777765 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.2e-07
         Suf   41 sAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsk.lskekeakelykkfleyestfgd 122 
                  +A+lEy    d++ +  IFe  +   p+  +    Y+d     nd  ++R lf++v++  ++++k ak+ +kk+le e + gd
  CDO73457.1 1377 FAQLEYK-LGDPERGKTIFEGIVDSHPKRWDMWSIYIDMEAGQNDIMSLRNLFNRVLALkMTSHK-AKSFFKKWLELERRLGD 1457
                  799****.556666*******************************************96477788.**************998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0    0.0002      0.24       2      53 ..    1306    1361 ..    1305    1368 .. 0.68
   2 !    8.1   0.0    0.0035       4.2       2      49 ..    1376    1420 ..    1375    1421 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      TPR_16    2 alaraalragdyddAaaaleaalkrdpssPd....aaeAllllgdaalrqgrlaeA 53  
                   +a ++ ++ ++++A++++++++k+++ s+      ae +l +g +  +++ l++ 
  CDO73457.1 1306 RMAEIFEQSDKPEKAEEQFKRTVKKFSQSSKvwtlFAEHYLKRGMVEEARKLLPRS 1361
                  6788899999****************433335555555555555555555555554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0035
      TPR_16    2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49  
                  + a++ +++gd+++    +e  ++++   P +++++  + d+ + q++
  CDO73457.1 1376 KFAQLEYKLGDPERGKTIFEGIVDSH---PKRWDMWSIYIDMEAGQND 1420
                  6799**********************...*******999998887766 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.1   3.7e+03       6      21 ..     260     275 ..     256     282 .. 0.84
   2 ?    1.7   0.0      0.24   2.8e+02       9      45 ..     353     394 ..     345     397 .. 0.82
   3 ?   -0.5   0.0       1.1   1.4e+03      11      38 ..     452     479 ..     441     481 .. 0.81
   4 ?    5.4   0.0     0.016        20       1      34 [.     531     565 ..     531     571 .. 0.76
   5 ?    5.2   0.1     0.018        22      11      44 ..     771     807 ..     762     811 .. 0.75
   6 ?    1.3   0.0      0.29   3.5e+02      36      48 ..     893     905 ..     886     930 .. 0.71
   7 ?    0.6   0.0       0.5   5.9e+02       2      25 ..     987    1010 ..     987    1027 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.1
        S1_2   6 tlkvlretdfgyfLqk 21 
                 t+ ++  +d gy L+ 
  CDO73457.1 260 TASIKSVEDHGYILDL 275
                 8899**********85 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.24
        S1_2   9 vlretdfgyfLq.....kdesgevlLpkkevpeeleiGdeve 45 
                 v+  ++ g+ Lq     +++ +++ Lp  + ++++++G++v+
  CDO73457.1 353 VTAVQPDGLILQvlgffDGTVDQFHLPPGDPEKHHKVGQKVK 394
                 77777888888766677888899****************997 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
        S1_2  11 retdfgyfLqkdesgevlLpkkevpeel 38 
                  e+++g++++ +   e +++ ++v +e+
  CDO73457.1 452 VESERGLVVDVGSDAEGFVHISQVADEH 479
                 37899*****8888999***99999875 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.016
        S1_2   1 iGkintlkvlretdfgyfLq.kdesgevlLpkkev 34 
                 +G++ + +v++ td ++f++ +++ + v  p+ ++
  CDO73457.1 531 VGEVIKGTVKKLTDSALFVSiSGNVDGVVWPNHYA 565
                 69*****************9444445566666665 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.018
        S1_2  11 retdfgyfL..qkdesgevlLpkkevp.eeleiGdev 44 
                 r+ ++g++L  +k  ++evlL k+++  ++++ G+ v
  CDO73457.1 771 RNPEKGFVLvaTKPREKEVLLQKNHLSlDTVQPGQLV 807
                 4446677777767677**********99****99977 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.29
        S1_2  36 eeleiGdeveVFv 48 
                 ++l++G+++++F+
  CDO73457.1 893 DQLKVGETIRGFI 905
                 5677777777776 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.5
        S1_2    2 GkintlkvlretdfgyfLqkdesg 25  
                  G+ +  +v++ +d g+f++ ++s+
  CDO73457.1  987 GQKVDGRVKKVEDYGLFIEIEGSK 1010
                  7778899***********966643 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.024        29     144     176 ..    1227    1259 ..    1194    1274 .. 0.84
   2 !   15.6   0.3   6.1e-06    0.0073     125     232 ..    1279    1389 ..    1262    1420 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.024
      TPR_15  144 qsaafllaraelyrqegqtdaAlrdyreAlala 176 
                  +s++ ++ + ++++q ++ d+A +++++Al+  
  CDO73457.1 1227 NSSYLWIQYMSFQLQISEIDKAREIAKRALKTI 1259
                  799***************************976 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6.1e-06
      TPR_15  125 dydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgp. 219 
                  ++  ++e l+s  +  ++ ++s ++ l++ae+ +q +++++A +++++ ++++ +ss++   +   ++ +g  +e+r+ll +  +  e+ + L+   
  CDO73457.1 1279 NVYGTDESLESTFKdAARHNDSKTVHLRMAEIFEQSDKPEKAEEQFKRTVKKFSQSSKVWTLFAEHYLKRGMVEEARKLLPRSLQSLEKRKHLKTIc 1375
                  44456777888555155588**************************************99988889999999999**99999888888888888752 PP

      TPR_15  220 .laaAlllLgrpkk 232 
                   +a    +Lg+p++
  CDO73457.1 1376 kFAQLEYKLGDPER 1389
                  25555567777766 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   5.7e+03      37      49 ..     200     212 ..     199     215 .. 0.60
   2 ?   -1.7   0.1       2.5     3e+03       4      22 ..     456     475 ..     453     476 .. 0.77
   3 ?    1.7   0.0      0.22   2.6e+02      33      57 ..     575     599 ..     568     601 .. 0.87
   4 !   17.1   0.1   3.3e-06     0.004      32      55 ..     663     686 ..     653     689 .. 0.88
   5 ?   -0.2   0.3      0.83     1e+03       4      28 ..     713     737 ..     711     752 .. 0.84
   6 ?   -1.0   0.0       1.5   1.8e+03       2      18 ..     852     868 ..     847     872 .. 0.69
   7 ?   -2.8   0.0       5.3   6.3e+03      40      55 ..     948     963 ..     939     965 .. 0.77
   8 ?    3.5   0.1     0.059        70      34      57 ..    1035    1058 ..    1026    1060 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
  RNase_II_C_S1  37 GervrVrLveADv 49 
                    G+ vr  ++++++
     CDO73457.1 200 GQYVRAVVTAVNP 212
                    6666666666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
  RNase_II_C_S1   4 dAvVvdvdd.rggtVqladP 22 
                    ++ Vvdv    +g V++++ 
     CDO73457.1 456 RGLVVDVGSdAEGFVHISQV 475
                    689***98527799999875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.22
  RNase_II_C_S1  33 glplGervrVrLveADvatrrvrFe 57 
                    + ++G  +  r+  +D+++ r+ ++
     CDO73457.1 575 RFKPGGSIKCRVLVVDPERKRIALT 599
                    678999***************9987 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 3.3e-06
  RNase_II_C_S1  32 aglplGervrVrLveADvatrrvr 55 
                    a+ p+G++v+Vr++++D++t+r++
     CDO73457.1 663 AAFPVGKPVQVRITAVDPETGRIT 686
                    489*******************96 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.83
  RNase_II_C_S1   4 dAvVvdvddrggtVqladPaVeArv 28 
                    ++vV d ++++++V l+   V+A +
     CDO73457.1 713 EGVVHDIRKDKAVVTLQPTQVTALL 737
                    89**************999999866 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1.5
  RNase_II_C_S1   2 tFdAvVvdvddrggtVq 18 
                    +  A+V++vd+++ +++
     CDO73457.1 852 VLKATVLSVDKERRQLR 868
                    56788888887665544 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 5.3
  RNase_II_C_S1  40 vrVrLveADvatrrvr 55 
                    v  r+ ++D+++ +v+
     CDO73457.1 948 VKGRILSVDPEKKQVE 963
                    5668999****99997 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.059
  RNase_II_C_S1   34 lplGervrVrLveADvatrrvrFe 57  
                      ++G++v   + ++D ++rr+ F 
     CDO73457.1 1035 FREGDKVKAVILSVDKEKRRISFG 1058
                     579*******************95 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.2e-06    0.0074       8      79 ..    1273    1358 ..    1266    1361 .. 0.84
   2 ?   -2.1   0.0       3.8   4.6e+03      52      79 ..    1367    1394 ..    1362    1398 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.2e-06
                  HHHHHHHHH.............HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3    8 Aiflaerll............aaetespedayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79  
                  A++ +e ++            aa +++++ ++l  A+ + ++ + ++A e ++++ k+ s+s +++ lfA+ +lk + +eeA+++L
  CDO73457.1 1273 ALLNLENVYgtdeslestfkdAARHNDSKTVHLRmAEIFEQSDKPEKAEEQFKRTvKKFSQSSKVWTLFAEHYLKRGMVEEARKLL 1358
                  67777777777777777665557777777788845************************************************998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.8
                  HHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   52 nskslgcrylfAqcllkLkkyeeAiaaL 79  
                  + k+l+    fAq  +kL+  e + +++
  CDO73457.1 1367 KRKHLKTICKFAQLEYKLGDPERGKTIF 1394
                  4467777777777777777666555555 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   1.9e+03      20      51 ..    1246    1277 ..    1241    1288 .. 0.65
   2 ?    5.4   0.0     0.019        23      40      72 ..    1296    1328 ..    1284    1331 .. 0.86
   3 !    8.4   0.0    0.0022       2.6       4      62 ..    1336    1388 ..    1333    1394 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
      TPR_12   20 deAlellekaleiarrllGpdhpltattlrnL 51  
                  d+A+e+ ++al  ++   + +++++ ++l nL
  CDO73457.1 1246 DKAREIAKRALKTINFREEQEKLNVWIALLNL 1277
                  67777777777776655555555555555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.019
      TPR_12   40 dhpltattlrnLgrlyralgryeeAlelleeal 72  
                   h +  t+   +++++++++++e+A+e +++++
  CDO73457.1 1296 RHNDSKTVHLRMAEIFEQSDKPEKAEEQFKRTV 1328
                  567777888999*****************9976 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0022
      TPR_12    4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgrye 62  
                  ++++  a+ ++++g  +eA++ll ++l+  ++    +h   + t +  ++l ++lg++e
  CDO73457.1 1336 KVWTLFAEHYLKRGMVEEARKLLPRSLQSLEKR---KH---LKTICKFAQLEYKLGDPE 1388
                  567789********************9999544...45...667888888888888876 PP

>> DUF2110  Uncharacterized protein conserved in archaea (DUF2110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.47   5.6e+02      68      93 ..     253     278 ..     237     282 .. 0.81
   2 ?    1.5   0.0      0.16   1.9e+02      56      92 ..     518     553 ..     513     559 .. 0.82
   3 ?   -3.2   0.0       4.2   5.1e+03      68      90 ..     706     728 ..     698     756 .. 0.75
   4 !   10.4   0.1    0.0003      0.36      67     134 ..     894     960 ..     884    1006 .. 0.80
   5 ?   -1.3   0.0       1.2   1.4e+03     114     142 ..    1228    1256 ..    1199    1292 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.47
     DUF2110  68 veegevyvGtlesldedgfvldigve 93 
                 +++g  ++  ++s++++g++ld g++
  CDO73457.1 253 LRPGFALTASIKSVEDHGYILDLGIP 278
                 7788888999**************86 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.16
     DUF2110  56 llreefgeitkeveegevyvGtlesldedgfvldigv 92 
                 +l+++f ++++ v+ gev++Gt+++l+++   + i  
  CDO73457.1 518 VLAQKFLQVAD-VQVGEVIKGTVKKLTDSALFVSISG 553
                 57777777765.99**************999998865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.2
     DUF2110  68 veegevyvGtlesldedgfvldi 90 
                 v+ g+++ G+++++ +d+ v+  
  CDO73457.1 706 VDIGDIVEGVVHDIRKDKAVVTL 728
                 67799999999999999998865 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.0003
     DUF2110  67 eveegevyvGtlesldedgfvldigvevripkdelkpLgegspeqiaerFGlvqhlpleveveeveee 134
                 +++ ge+++G+++s+ e+g  +  g ++ +   ++k+L    +++ ++rF + q +  ++   + e++
  CDO73457.1 894 QLKVGETIRGFIKSVAEHGLFVTLGRDIDARV-QIKELFDDYVKDWKSRFAVNQLVKGRILSVDPEKK 960
                 5899***********************88765.6888*************987776666655443333 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.2
     DUF2110  114 erFGlvqhlpleveveeveeeekeiearl 142 
                  +++ ++q+++ +++++e++++++  + +l
  CDO73457.1 1228 SSYLWIQYMSFQLQISEIDKAREIAKRAL 1256
                  67889**********88877665554444 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       4.9   5.8e+03      15      28 ..    1244    1257 ..    1236    1258 .. 0.77
   2 !    6.9   0.0    0.0095        11       3      33 .]    1304    1334 ..    1302    1334 .. 0.92
   3 ?    6.5   0.0     0.012        14       7      32 ..    1378    1403 ..    1376    1403 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.9
                  HHHHHHHHHHHHHH CS
       TPR_6   15 dtdkAlealerlik 28  
                  + dkA+e+ +r +k
  CDO73457.1 1244 EIDKAREIAKRALK 1257
                  789*****999887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0095
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6    3 lyklalsyrklgdtdkAlealerlikeYPdS 33  
                   +++a+ +++ ++++kA e ++r +k++ +S
  CDO73457.1 1304 HLRMAEIFEQSDKPEKAEEQFKRTVKKFSQS 1334
                  69********88****************987 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.012
                  HHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6    7 alsyrklgdtdkAlealerlikeYPd 32  
                  a++ +klgd+++ ++++e +++++P+
  CDO73457.1 1378 AQLEYKLGDPERGKTIFEGIVDSHPK 1403
                  78899*99****************96 PP

>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.7   6.8e+03      25      51 ..     149     177 ..     148     183 .. 0.78
   2 ?    6.5   0.0    0.0062       7.4       5      42 ..     447     484 ..     445     487 .. 0.91
   3 ?    3.7   0.0     0.048        58       2      48 ..     991    1042 ..     984    1054 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.7
                 EEEEET..TTS-STT.TS--STSEEEEEE CS
         CSD  25 dvFvHv..saiqgdgfrsLqegqeVeFev 51 
                 ++F Hv  ++i+++    L+  ++Ve + 
  CDO73457.1 149 QLFAHVpiTQISTQLTHILESMDDVEMQS 177
                 58899544899999999999999998665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0062
                 EEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS-- CS
         CSD   5 VkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLq 42 
                 Vk + ++++ G++ +   d++ FvH+s++ ++ + +L 
  CDO73457.1 447 VKVVRVESERGLVVDVGSDAEGFVHISQVADEHVPTLS 484
                 89999999**********************99988875 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.048
                  EEEEEEEETTTTEE.EEEETTSS-EEEEETTTS-STT........TS--STSEEE CS
         CSD    2 tGtVkwfnakkgfG.FItredgdkdvFvHvsaiqgdg.......frsLqegqeVe 48  
                   G Vk++++   +G FI+ e  +    +H s++++++       +rs  eg++V+
  CDO73457.1  991 DGRVKKVED---YGlFIEIEGSKLSGLCHKSELSDNKdadvtlaLRSFREGDKVK 1042
                  588888888...996777777777999*********99***************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       8.1   9.7e+03      17      29 ..    1245    1257 ..    1244    1257 .. 0.87
   2 ?    6.1   0.0     0.011        14       3      29 ..    1303    1329 ..    1302    1333 .. 0.89
   3 ?    2.6   0.0      0.15   1.8e+02       3      24 ..    1337    1358 ..    1335    1363 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.1
       TPR_2   17 yeeAleafekAle 29  
                   ++A+e  ++Al+
  CDO73457.1 1245 IDKAREIAKRALK 1257
                  589********97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
       TPR_2    3 alynlGlayyklgdyeeAleafekAle 29  
                  ++ +++++ ++++++e+A+e f++ ++
  CDO73457.1 1303 VHLRMAEIFEQSDKPEKAEEQFKRTVK 1329
                  68899******************9776 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
       TPR_2    3 alynlGlayyklgdyeeAleaf 24  
                  ++   ++ y+k+g  eeA++++
  CDO73457.1 1337 VWTLFAEHYLKRGMVEEARKLL 1358
                  56666899***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.53
# Mc/sec: 8467.70
//
Query:       CDO73458.1  [L=220]
Description: hypothetical protein BN946_scf185013.g93 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-36  125.1   0.1    1.6e-36  124.5   0.1    1.3  1  SF3A2           Pre-mRNA-splicing factor SF3a complex subunit
      2e-06   28.0   0.7      2e-06   28.0   0.7    1.7  2  zf-met          Zinc-finger of C2H2 type
     0.0076   15.8   0.9      0.016   14.7   0.9    1.5  1  PRP4            pre-mRNA processing factor 4 (PRP4) like
  ------ inclusion threshold ------
      0.019   14.9   0.1      0.028   14.3   0.1    1.3  1  CactinC_cactus  Cactus-binding C-terminus of cactin protein


Domain annotation for each model (and alignments):
>> SF3A2  Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.1   3.6e-40   1.6e-36       1      96 []     112     210 ..     112     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 3.6e-40
       SF3A2   1 igrPgykvtkvrdpeteqvgllvevkypeikeevkPlhrimsaleqkleekpdkkvqyLliaaePYetiafkipskeidksedkl....wtfwdkdkke 95 
                 igrPgy+vtkvrd +t+++g++v+v++p+ik  v P++r+msa+eq++e +p+k++qyL++aaePYetiaf+ip++ei++++d+     w++wd+d+k+
  CDO73458.1 112 IGRPGYRVTKVRDRDTGKEGMMVQVHLPQIKPGVIPRRRFMSAWEQRKE-PPNKAYQYLIVAAEPYETIAFRIPAREIEDESDDAgywnWSHWDPDTKQ 209
                 8**********************************************99.7**************************987766555788********** PP

       SF3A2  96 y 96 
                 y
  CDO73458.1 210 Y 210
                 9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.7   1.7e+04      16      22 ..      47      53 ..      45      53 .. 0.79
   2 !   28.0   0.7   4.4e-10     2e-06       2      25 .]      55      78 ..      54      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.7
      zf-met 16 lksHlqG 22
                l++Hl +
  CDO73458.1 47 LRNHLGS 53
                789*965 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 4.4e-10
      zf-met  2 yCelCnvtfnsesqlksHlqGKkH 25
                +C lC + +++e+++ +H qGKkH
  CDO73458.1 55 ECRLCLTLHTNEGSYLAHTQGKKH 78
                7*********************** PP

>> PRP4  pre-mRNA processing factor 4 (PRP4) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.9   3.6e-06     0.016      17      29 .]      21      33 ..      20      33 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-06
        PRP4 17 EthadRreRLrkL 29
                Et+ dRreRLrkL
  CDO73458.1 21 ETNVDRRERLRKL 33
                9***********8 PP

>> CactinC_cactus  Cactus-binding C-terminus of cactin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   6.3e-06     0.028      60     118 ..     154     214 ..     130     220 .] 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.3e-06
  CactinC_cactus  60 tykiekkteeeetvllrfkagkpYediafrivdkewdlskk.rgfks..sfergvlqlyfnf 118
                      ++  k++ ++ +  l + a +pYe iafri  +e + ++   g+ +   ++ ++ q +f+f
      CDO73458.1 154 AWEQRKEPPNKAYQYLIVAA-EPYETIAFRIPAREIEDESDdAGYWNwsHWDPDTKQYSFQF 214
                     67777777777777776665.89************986655378754114555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1578.60
//
Query:       CDO73459.1  [L=124]
Description: hypothetical protein BN946_scf185013.g94 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-05   25.9   0.1    2.3e-05   25.0   0.0    1.5  1  Ribonuclease  ribonuclease


Domain annotation for each model (and alignments):
>> Ribonuclease  ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.3e-09   2.3e-05       9      81 ..      46     114 ..      38     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.3e-09
  Ribonuclease   9 lqaieaGskagsgpfryksigGdvfgNregl.LPkkksgyYrEydvntpgekyr....gadRivtgdgldske..tyyta 81 
                   +++ e G  a+++p++y        +++eg+ +P+  +g+++Ey+++ ++  y+    gadR+++ ++ d +   t+++a
    CDO73459.1  46 IDKAEDG-GASDYPHQY--------HDYEGFdFPSC-RGTFYEYPLEHNRV-YSggspGADRVIYDSRGDFCAclTHTGA 114
                   4444555.233377777........89*******99.9*********9988.666778*******944445557799987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 898.07
//
Query:       CDO73460.1  [L=401]
Description: hypothetical protein BN946_scf185013.g95 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.8    8.1   9.1        1.2    8.7   7.7    1.5  1  FAM220    FAM220 family


Domain annotation for each model (and alignments):
>> FAM220  FAM220 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   7.7     7e-05       1.2      32     118 ..     200     287 ..     147     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 7e-05
      FAM220  32 klkkrsqkesvspsdap.swtaqsvldsnkrsrakeakslekksalskasllkhskkkvlPplkessrrssasasssskavslssapk 118
                 ++ +  ++  v+p++ p + ta+++ +  krsr  +++ +  +s +s as+  h   ++ Pp + s  +ss+s+  +  a s+s  p 
  CDO73460.1 200 QVARSHHHTPVIPVPPPnARTATPDNHLRKRSREDPQEPFRSSSGYSSASSAAHEHWQAPPPYTDSESGSSSSSNPQTPASSSSHLPR 287
                 45555566667777777999*************************************************8888887777766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2845.50
//
Query:       CDO73461.1  [L=577]
Description: hypothetical protein BN946_scf185013.g96 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-13   49.5  13.1    4.8e-13   49.5  13.1    3.1  3  Drc1-Sld2  DNA replication and checkpoint protein


Domain annotation for each model (and alignments):
>> Drc1-Sld2  DNA replication and checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5  13.1   2.7e-17   4.8e-13       2      94 ..       4      89 ..       3     146 .. 0.58
   2 ?   -1.3   7.0     0.068   1.2e+03     176     270 ..     104     194 ..      75     268 .. 0.60
   3 ?   -3.5   4.0      0.31   5.6e+03     216     232 ..     353     379 ..     236     456 .. 0.36

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.7e-17
   Drc1-Sld2  2 sqLraelKeWEraFaakngrkpsreDIKknpeIaakYkeYskLkakesqskkdkkpsksvkleerpkkrkhesteepkeeqknnststprksk 94
                ++L+ae+K+WEr+F+ak+ r ps ++IK++p+IaakYk+Y++L + +  s +++k+ ++  +  r+  r+ + ++         ++s p k +
  CDO73461.1  4 ATLKAEIKAWERDFRAKHARDPSIQEIKDQPAIAAKYKLYKSLSKPS-TSLSHTKHAAPPSTPPRSAPRQPQPSSSIV------HKSRPVKVD 89
                69*****************************************8888.333333333333333333333222222222......222222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.068
   Drc1-Sld2 176 rraldinaeedrtpassgkklllsslfatpttlr.eaesaknkkdkeasknsssskleseTPsflrrknsarlptvdeasefdlspsplrkpqrlv 270
                 r++l ++      + +++ +l   ++fatp++ + + ++++++ ++ + +  +   ++  TP+  + + + + +++  + e ++spsp++ ++  v
  CDO73461.1 104 RKKLPVQ----HSSPQRASHLPRPNPFATPSKSKpKPHASRRSPSPDPFPLIQPTIAVHRTPKAPAADPAVTRARKRLRGE-PVSPSPVKEKRPRV 194
                 2233333....2233333333333444444433334444444545555555555555666666666666444444444555.99999994443333 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.31
   Drc1-Sld2 216 n.....kkdkeasknsssskl.....e 232
                 +     + ++ +s++s+++ l     +
  CDO73461.1 353 TalirtTSTNLPSRSSNKRSLpdehdD 379
                 123322222222222222222333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3926.40
//
Query:       CDO73462.1  [L=382]
Description: hypothetical protein BN946_scf185013.g97 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   13.9   0.0      0.078   12.9   0.0    1.5  1  SPOC      SPOC domain


Domain annotation for each model (and alignments):
>> SPOC  SPOC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.4e-06     0.078      86     126 ..     238     276 ..     220     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.4e-06
                 HHHHHHHTTTEEEE.....EE-TTS-EEEEE-S...STHHH CS
        SPOC  86 elvdYLksKqraGvvnlnksglnqngvlyifPpgalcefae 126
                 e  +Y+++K+raG+  ++++ +++++v  ++P  ++  ++e
  CDO73462.1 238 ETLKYFNEKNRAGI--VEANAQAWQRVAELLPHLQHIRLSE 276
                 5789**********..8888899999999999966434444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2787.52
//
Query:       CDO73463.1  [L=443]
Description: hypothetical protein BN946_scf185013.g98 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-18   66.0   0.0    1.2e-17   64.3   0.0    1.9  1  PCI             PCI domain
    2.5e-05   24.3   0.7    7.8e-05   22.7   0.7    1.9  1  RPN5_C          26S proteasome regulatory subunit RPN5 C-term
  ------ inclusion threshold ------
      0.034   14.2   0.0       0.11   12.6   0.0    1.8  1  Pro_3_hydrox_C  L-proline 3-hydroxylase, C-terminal
       0.11   12.9   0.6       0.53   10.7   0.1    2.4  2  LPP             Lipoprotein leucine-zipper
       0.16   11.7   2.4        1.7    8.3   2.2    2.1  1  LUC7            LUC7 N_terminus


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   3.4e-21   1.2e-17       5     104 ..     297     398 ..     295     399 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 3.4e-21
                 HHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHH...HHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   5 dllkalrsgnlsgfseelkdleeelladdglaq...llesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 +l+k++++ +l++++ +   +  + l++ ++     l+e+L+ +v+e+++r v+++y++i+++rl++lldl+++++E++l++l+ +g i a+id++ gi
  CDO73463.1 297 ALVKCFTTPELMRWPGIEVIY-GPHLKKTEVFSsdkLWEDLHTRVIEHNIRIVAQYYTRITIARLTSLLDLTQQQTEEVLCRLVVSGTIWARIDRPVGI 394
                 578888888888888888888.44444444433577*************************************************************** PP

                 EEEC CS
         PCI 101 vvfk 104
                 ++f+
  CDO73463.1 395 INFR 398
                 *996 PP

>> RPN5_C  26S proteasome regulatory subunit RPN5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.7   2.2e-08   7.8e-05       2      21 ..     405     424 ..     404     425 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
      RPN5_C   2 evLNeWssninkLLelvekt 21 
                 +v N+Wss++  LL l+ekt
  CDO73463.1 405 DVMNDWSSDMQRLLGLIEKT 424
                 899****************9 PP

>> Pro_3_hydrox_C  L-proline 3-hydroxylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     3e-05      0.11      43      90 ..      69     123 ..      40     128 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3e-05
                     TTHHHH...HHHHHHHCCTBSS-TTHH....HHHHHHHHHHH--HHHHHHHHHHH CS
  Pro_3_hydrox_C  43 anykdi...vflLaklhffekvpieas....ydWLkeicrrrGdpaLiekaeslr 90 
                     +n+k +   +  L+k h + k+ i+a+     +WL +i +++G +  +e+ e+lr
      CDO73463.1  69 RNFKALnnnINTLSKKHGQLKAAIQAMveqaMGWLEDIRKTEGTDTWLELIETLR 123
                     566644222567888888877776655222279****************999988 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00015      0.53       3      31 ..      72     100 ..      70     105 .. 0.87
   2 ?   -1.4   0.1       0.9   3.2e+03       6      32 ..     411     437 ..     407     442 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
         LPP   3 deLssqVsqLkskvdqlssdvnsakaaaq 31 
                 + L++++++L++k  ql++ ++++ ++a+
  CDO73463.1  72 KALNNNINTLSKKHGQLKAAIQAMVEQAM 100
                 679999************99999998887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.9
         LPP   6 ssqVsqLkskvdqlssdvnsakaaaqa 32 
                 ss+ ++L   +++    vn+a+aa   
  CDO73463.1 411 SSDMQRLLGLIEKTWMGVNAAQAAQSR 437
                 666666666666555556666655444 PP

>> LUC7  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.2   0.00047       1.7     125     177 ..       5      57 ..       2     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00047
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LUC7 125 qeqlkeleekiekllaeaeelgeeGkVdeaqklmkeveelkeekeeleqqyea 177
                 ++q k++++++e+ll eae+l++ Gk  ea + +  +e+  ++ ++l+++++ 
  CDO73463.1   5 KKQEKDFTKEVESLLPEAESLATAGKLHEALDKIYVLEKQTRNASDLKSTTKL 57 
                 56778999************************999999999998888866654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3327.95
//
Query:       CDO73464.1  [L=291]
Description: hypothetical protein BN946_scf185013.g99 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-53  180.1   6.3      1e-51  175.7   4.5    2.3  2  MRP-S25   Mitochondrial ribosomal protein S25
     0.0001   22.6   0.7    0.00024   21.4   0.7    1.8  1  MRP-S23   Mitochondrial ribosomal protein S23


Domain annotation for each model (and alignments):
>> MRP-S25  Mitochondrial ribosomal protein S25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   4.5   1.1e-55     1e-51       3     224 ..       3     208 ..       1     215 [. 0.88
   2 ?   -2.4   0.0      0.33   2.9e+03     111     133 ..     214     233 ..     207     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 1.1e-55
     MRP-S25   3 iqtnavnvlertsallksgllkkkPawydvvakiPPstkltrkpklredpskkkrkktlkkksekkklektreskkekkkkakklfkppklkyleDklR 101
                 ++  a +v++++s+ll++g+++++Pawy++v+++PP   ++r+p++r  + + ++            +  tr       ++++   +p +++y+eD++R
  CDO73464.1   3 TKRIANQVHKQASRLLREGYIQREPAWYRAVLDHPPLPLPAREPPSR-THFDAPED-----------VPLTRP------STST-KIQPLPVQYIEDQVR 82 
                 66779******************************************.33332222...........222222......2233.3689*********** PP

     MRP-S25 102 kqFykdHPwElarPkvlvE....nsgkdlekkdwsrlrqlgkpldgEsvVqrtlyLlknkeklslseAYdkarfeFyrlrmeeeiesrvAkeEaemyGa 196
                 kqF++dHP+E++r k+lvE    +s +  +  +w+rlrq+++++++E++++ +++L+++ ++++ls+AY +a+++F+ lr e +i+++vA  Eae++G 
  CDO73464.1  83 KQFFRDHPFEAFREKSLVEgatvESEHPVRGEQWKRLRQRSRNPSPEDAIRYAVNLYEH-HNMPLSDAYASAVAQFRSLRSEITIARQVALSEAEYLGI 180
                 *******************9987444567789***************************.*************************************** PP

     MRP-S25 197 vfgkseleiglekeqkvidkwkkkaeee 224
                  fg+s++ei++eke+k++d+++ +a+++
  CDO73464.1 181 EFGPSQIEITFEKENKALDTFRGDAAHD 208
                 *********************9887655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.33
     MRP-S25 111 ElarPkvlvEnsgkdlekkdwsr 133
                 E  r k +vE +g   ++ +w++
  CDO73464.1 214 ERKRWKAVVEREG---RSDQWTK 233
                 5567788999888...4567766 PP

>> MRP-S23  Mitochondrial ribosomal protein S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.7   2.6e-08   0.00024      10      78 ..       9      91 ..       3     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.6e-08
     MRP-S23 10 tiftrvkdLlrsgvlkeeekPlWydvyeafPPkreplyerpapkl..............edkvre..ilYeeDevrakfykqygk 78
                ++ ++ + Llr+g ++   +P Wy  +  +PP+  p+ e p++                ++k+++  + Y eD+vr++f++++  
  CDO73464.1  9 QVHKQASRLLREGYIQ--REPAWYRAVLDHPPLPLPAREPPSRTHfdapedvpltrpstSTKIQPlpVQYIEDQVRKQFFRDHPF 91
                68889999*******9..89************9888888777643577899999999998888853389***********86543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2020.58
//
Query:       CDO73465.1  [L=401]
Description: hypothetical protein BN946_scf185013.g100 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3043.18
//
Query:       CDO73466.1  [L=829]
Description: hypothetical protein BN946_scf185013.g101 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5864.63
//
Query:       CDO73467.1  [L=908]
Description: hypothetical protein BN946_scf185013.g102 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   13.7   0.7       0.28   11.9   0.0    2.3  2  Pal1      Pal1 cell morphology protein


Domain annotation for each model (and alignments):
>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.28       1      47 [.     189     232 ..     189     260 .. 0.82
   2 ?   -2.7   0.1       0.5     9e+03      81      81 ..     699     699 ..     637     734 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
        Pal1   1 DtiDkLDvtglfgglfHHdGPfDAvtphrNknskaaPvlAfpkdgan 47 
                 D +D +D t  +g  +HH+ P+D    + N+++ ++Pv  f+   a 
  CDO73467.1 189 DNVDMMDGTDPWGTNWHHQSPYDI---QSNERRTEPPVRDFAGARAA 232
                 899********************7...56777788888888765554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.5
        Pal1  81 s 81 
                 +
  CDO73467.1 699 E 699
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 6226.00
//
Query:       CDO73468.1  [L=788]
Description: hypothetical protein BN946_scf185013.g103 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-80  268.5   0.0    4.8e-80  267.9   0.0    1.3  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
    7.3e-35  119.6   0.0    3.2e-34  117.6   0.0    2.2  2  GARS_N       Phosphoribosylglycinamide synthetase, N domain
    8.5e-35  120.2   0.0    1.7e-34  119.2   0.0    1.5  1  AIRS_C       AIR synthase related protein, C-terminal domain
    1.2e-26   92.7   0.2    3.4e-26   91.3   0.2    1.8  1  GARS_C       Phosphoribosylglycinamide synthetase, C domain
    1.7e-15   57.4   0.7      2e-14   54.0   0.9    2.6  2  AIRS         AIR synthase related protein, N-terminal domain
    0.00058   19.4   0.0    0.00096   18.7   0.0    1.3  1  CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP bindin
      0.002   18.2   0.2     0.0045   17.1   0.0    1.7  2  ATP-grasp_3  ATP-grasp domain
  ------ inclusion threshold ------
      0.045   13.4   0.0      0.099   12.2   0.0    1.5  1  RimK         RimK-like ATP-grasp domain


Domain annotation for each model (and alignments):
>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.0   2.1e-83   4.8e-80       1     194 []     107     301 ..     107     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 267.9 bits;  conditional E-value: 2.1e-83
                 HBHHHHHHHHHHTT--B--EEEES..SHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEE CS
      GARS_A   1 asKsfakdllkkagiptaeyeaft..dpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsll 97 
                 +sK+f+k+++++++ipta++++f+  ++e+a ey++++++k+ V+Ka+glaagKgv ++++++ea++ +kei++++ fG ag++vviEell+G Evs+l
  CDO73468.1 107 GSKAFSKAFMARHNIPTAKFKVFQcsEYEHAIEYVRTCGFKV-VLKASGLAAGKGVLLPETVDEAIAGLKEIMVDNVFGVAGQEVVIEELLTGPEVSVL 204
                 69*******************997668***************.******************************************************** PP

                 EEECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS--TTCH CS
      GARS_A  98 alvdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvRfgDpet 194
                 a++dg+tv+plp+aqdhkr++egD+gpnTGGmGay+papv+t++++ +i++e+l+pt+ g+++eg+pf+G+L++glm++e+gpkvle+nvRfgDpet
  CDO73468.1 205 AFSDGYTVTPLPAAQDHKRIGEGDTGPNTGGMGAYAPAPVATPDIMARIVQEVLQPTISGMRREGYPFVGMLFVGLMITENGPKVLEYNVRFGDPET 301
                 ************************************************************************************************8 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   1.4e-37   3.2e-34       2      90 .]       6     106 ..       5     106 .. 0.96
   2 ?   -2.9   0.0       5.4   1.2e+04      62      82 ..     551     570 ..     547     573 .. 0.79

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 1.4e-37
                 EEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG.............TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CCCC CS
      GARS_N   2 kvLvvGsGGRehalawklaqspkvekvyvapgNagt.............edlealvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpskeaA 87 
                 ++LvvGsGGRehalawkl+qsp+v++++v+pgN+gt             +d+ alv+fa +++i+lv++Gpe+pLv+G++ ++++  gi+vfGp++ aA
  CDO73468.1   6 RILVVGSGGREHALAWKLSQSPRVDQIFVCPGNGGTahesktanvnlsaSDFPALVDFALKNDISLVLPGPEQPLVDGIESHFRKV-GIPVFGPTALAA 103
                 8**************************************999999999988999*****************************655.************ PP

                 HHH CS
      GARS_N  88 qlE 90 
                 ++E
  CDO73468.1 104 RME 106
                 **9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.4
                 HHHTTHHHHHHHHHT-EEES- CS
      GARS_N  62 pLvaGvadaleeekgikvfGp 82 
                  +v+G+ad + ++ g++ +G 
  CDO73468.1 551 RVVKGIADGCVQA-GCALIGG 570
                 6799****99776.9988886 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   7.7e-38   1.7e-34       2     152 ..     612     778 ..     611     780 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 7.7e-38
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT.......TSEHHHHHHHHHHHHHHHHHHHH.HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECG CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeegldds.......avqlgdvlleptliyvkralaal.kglvkaahDvTgGGLlgalaemapasgvgaeidld 92 
                 pGdvl++++s+G++++g+sl+rk+++ +gl +        ++ lg +llept+iyvk  l+a+  gl k++ ++TgGG+++++++++p++  g  id++
  CDO73468.1 612 PGDVLLGLPSSGVHSNGFSLVRKVVALSGLSYTdpcpwdaSRTLGAALLEPTRIYVKSVLPAAqAGLLKGMSHITGGGFVENVPRVLPKG-TGCFIDAA 709
                 9****************************9999******7777**********************************************7.******** PP

                 ...THHHHHHHH.....HHHHHHHCSTTTEEEEEEEHGGH.HHHHHHHHHTTCCCEEEEEEEEESSSEE CS
      AIRS_C  93 ...kvpifdele.....splemllsensGrllvavppeea.davlaileeeglpeaavIGevtakeels 152
                     +p+f  l+      plem++++n G+++++v+++++ ++++++l+ +g +e+ +IGe+ta+++++
  CDO73468.1 710 aweLPPVFRFLMrhgrvAPLEMARTFNNGVGMILVVAPDKvERAIEALRGAGQKEVFRIGEITAQPGVE 778
                 ****************************************************************99765 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.2   1.5e-29   3.4e-26       2      80 .]     339     426 ..     338     426 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.5e-29
                 EEEEEEETTTTSS--ST-EEBS....TTEEEEESSEE.....EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TTEE--STTTHH CS
      GARS_C   2 vgvvlaskGYPgsyekgkeitg....egvkvfhagtk.....lvtsGGRvlavvavgetleeArakayeavkkikfeglfyRkDIGar 80 
                 v vvlas+GYPgsy+kgkeit     ++v  fhagt+     + tsGGRvl ++a++ tl+ A ++ay++v++i+feg+++R+DI++r
  CDO73468.1 339 VSVVLASQGYPGSYAKGKEITFrqlpSDVVAFHAGTSaidgkIFTSGGRVLVISAYAPTLQGALDAAYAGVSNIHFEGKIFRRDIAHR 426
                 78******************879***8899******9999999*******************************************97 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.4   3.2e+03      57      75 ..      79      97 ..      69     100 .. 0.84
   2 !   54.0   0.9   8.8e-18     2e-14       8      92 ..     493     597 ..     467     599 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHTT-EEEE CS
        AIRS 57 evvrglaeaaeelgvplvg 75
                 +v+g+++  +++g+p+ g
  CDO73468.1 79 PLVDGIESHFRKVGIPVFG 97
                5899************987 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 8.8e-18
                 EEEEEE.EECCTCCCC........HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEEEEEESS.......... CS
        AIRS   8 ttdshnrpvlvepvhf........iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGdtsfsne.......... 83 
                  td++++++ v             +G  +va+ ++Dl++ GA+Pl++l+++a++     ++++vv+g+a+++ ++g++l+gG+t+++++          
  CDO73468.1 493 GTDGVGTKLRV----AmdvgihdfVGIDLVAMSVNDLLVQGAEPLYFLDYFACSkldvdTAARVVKGIADGCVQAGCALIGGETAEMPNgfsisfrcpd 587
                 44444444444....033345556*************************************************************99766666666666 PP

                 .EEEEEEEEE CS
        AIRS  84 .ptisvtavG 92 
                  + ++ +avG
  CDO73468.1 588 dYDLAGFAVG 597
                 6566666666 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.3e-07   0.00096       4     101 ..     111     205 ..     108     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.3e-07
                  HHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEE CS
  CPSase_L_D2   4 sakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlr 101
                   +k+ +++ n+p+++ +  + ++ e+a++ ++++g+ v++ka+    GkG  + ++ +e ++ +k+ +       + ++v +e+ l+gp   Ev vl+
   CDO73468.1 111 FSKAFMARHNIPTAKFKVFQCSEYEHAIEYVRTCGFKVVLKASGLAAGKGVLLPETVDEAIAGLKEIMVDNVFGVAGQEVVIEELLTGP---EVSVLA 205
                  567889*********999999*******************************************99999998778889*********99...555555 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     2e-06    0.0045      28     159 ..     142     297 ..     108     299 .. 0.73
   2 ?   -3.5   0.2       4.2   9.3e+03     133     145 ..     508     520 ..     502     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2e-06
                  S--SSSEEEEESS-------B--SS--TTE...................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET........TEEEEEE CS
  ATP-grasp_3  28 eeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieGkplSvsllsdgekvlvlavnrqliekaeke....fvyaGnv 109
                  +    k+v+K +  a+g++v++ e  +ea a ++e+             ++ e + G ++Sv + sdg +v +l   + +   +e +        G  
   CDO73468.1 142 RTCGFKVVLKASGLAAGKGVLLPETVDEAIAGLKEIMvdnvfgvagqevVIEELLTGPEVSVLAFSDGYTVTPLPAAQDHKRIGEGDtgpnTGGMGAY 239
                  3337789999999999999999999999999999888899999999999*************************888776555443366886666777 PP

                  ES----HHHHHHHHHHHH....HTTST....T--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3 110 tpietelkeevvelaeev....vekle....glaGyvGvDlvlkdeepyviEvNPRlt 159
                  +p+++   + + ++++ev    ++ ++    + +G++ v l++++++p v+E N R+ 
   CDO73468.1 240 APAPVATPDIMARIVQEVlqptISGMRregyPFVGMLFVGLMITENGPKVLEYNVRFG 297
                  777777766666666655111155555666678899999999**************95 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.2
                  T--EEEEEEEEES CS
  ATP-grasp_3 133 glaGyvGvDlvlk 145
                  g+  +vG+Dlv  
   CDO73468.1 508 GIHDFVGIDLVAM 520
                  78889*****954 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.4e-05     0.099       4      66 ..     109     171 ..     107     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-..-SSEEEEE-TTTT--EEEEE-SHHHHH CS
        RimK   4 KlkslklLakakikvpntalardeedaekliekik.lrfPvvvKsvegsqGikvvlakkeqklk 66 
                 K+ s + +a+++i++ ++++ +   + e+ ie ++  +f vv+K +    G +v+l ++ +++ 
  CDO73468.1 109 KAFSKAFMARHNIPTAKFKVFQCS-EYEHAIEYVRtCGFKVVLKASGLAAGKGVLLPETVDEAI 171
                 788999*************98754.4567778777679********************999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 5240.47
//
Query:       CDO73469.1  [L=642]
Description: hypothetical protein BN946_scf185013.g104 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-11   42.1   0.0    1.7e-10   41.3   0.0    1.4  1  Ank_2      Ankyrin repeats (3 copies)
    2.2e-08   33.7  13.9     0.0004   20.1   3.1    2.5  2  zf-CCCH_4  CCCH-type zinc finger
    1.8e-07   31.3   0.0      5e-07   29.9   0.0    1.8  1  Ank_5      Ankyrin repeats (many copies)
    2.1e-07   31.1  17.3    2.2e-06   27.9   4.6    2.5  2  zf-CCCH_2  RNA-binding, Nab2-type zinc finger
      4e-07   29.8   0.0    0.00067   19.9   0.0    2.8  2  Ank_3      Ankyrin repeat
      3e-06   27.7   0.0    5.4e-06   26.8   0.0    1.5  1  Ank_4      Ankyrin repeats (many copies)
    2.2e-05   24.7   0.0    0.00039   20.8   0.0    2.4  2  Ank        Ankyrin repeat
    4.3e-05   23.4  16.5    0.00029   20.8   2.1    2.8  3  zf_CCCH_4  Zinc finger domain
    4.3e-05   23.3  11.4      0.017   15.1   2.2    2.6  2  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0011   19.7   0.5     0.0011   19.7   0.5    2.3  2  Torus      Torus domain
  ------ inclusion threshold ------
       0.26   11.5   2.8        7.5    6.8   0.0    2.3  2  zf-CCCH_3  Zinc-finger containing family


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.1e-13   1.7e-10      28      80 ..       3      63 ..       2      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.1e-13
       Ank_2 28 taLhyAakngnleivklLleh........adndgrtpLhyAarsghleivklLlekgadin 80
                ++L+ A+++gnle+v  Ll+          d +g tpL+ A+++gh eiv++Ll+kgad++
  CDO73469.1  3 SPLWKACSEGNLETVVQLLQDatpvdvevKDHTGVTPLIEAVKNGHVEIVRVLLDKGADPT 63
                69**********997666653378665544499**************************97 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   3.1   2.4e-07    0.0004       2      22 .]     174     192 ..     173     192 .. 0.95
   2 !   18.9   3.1   5.9e-07   0.00096       1      21 [.     400     420 ..     400     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.4e-07
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C+y+    Cr+G  C F+H+
  CDO73469.1 174 PCRYYP--ACRYGASCMFAHP 192
                 9*****..************7 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.9e-07
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsH 21 
                 ++C +f  G+Cr Gd CrF H
  CDO73469.1 400 PPCLFFPSGRCRNGDECRFPH 420
                 69*****************99 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.1e-10     5e-07       1      49 [.      21      69 ..      20      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.1e-10
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49
                L+++ p+dv  +d  g+tpL+ A+k+g+ ++vr+Ll+ gad++   s+G
  CDO73469.1 21 LQDATPVDVEVKDHTGVTPLIEAVKNGHVEIVRVLLDKGADPTNASSQG 69
                66777*************************************9998887 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   4.6   1.3e-09   2.2e-06       1      18 []     174     192 ..     174     192 .. 0.99
   2 !    8.8   4.8    0.0015       2.4       1      17 [.     401     420 ..     401     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
   zf-CCCH_2   1 pCrffpnC.tnpkCpFaHP 18 
                 pCr++p+C ++++C+FaHP
  CDO73469.1 174 PCRYYPACrYGASCMFAHP 192
                 9*****************9 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 pC ffp   C  +++C+F H
  CDO73469.1 401 PCLFFPSgrCrNGDECRFPH 420
                 8*****************66 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0068        11       4      23 ..       3      22 ..       2      31 .. 0.72
   2 !   19.9   0.0   4.1e-07   0.00067       2      29 ..      36      62 ..      35      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0068
       Ank_3  4 tpLhlAarsgnleivkfLle 23
                +pL  A++ gnle v  Ll+
  CDO73469.1  3 SPLWKACSEGNLETVVQLLQ 22
                79**********96666665 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 4.1e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G tpL +A+++g++eiv+ Ll+ kgad+
  CDO73469.1 36 GVTPLIEAVKNGHVEIVRVLLD-KGADP 62
                78********************.9**97 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.3e-09   5.4e-06       3      55 .]       3      56 ..       1      56 [. 0.90

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.3e-09
       Ank_4  3 taLhyaaisgrlelvrlLl..ekgadinaqdnrsGetalhiAakrgnveilklLl 55
                ++L +a+++g+le+v  Ll  ++ +d+    +  G t+l+ A+k+g+vei++ Ll
  CDO73469.1  3 SPLWKACSEGNLETVVQLLqdATPVDVEVK-DHTGVTPLIEAVKNGHVEIVRVLL 56
                79************9988833347999998.**********************97 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.41   6.7e+02       4      24 ..       3      23 ..       2      33 .. 0.70
   2 !   20.8   0.0   2.4e-07   0.00039       2      29 ..      36      65 ..      35      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.41
                BHHHHHHHHTT.HHHHHHHHTT CS
         Ank  4 TPLHlAatngk.kriiklLLhG 24
                +PL  A+++g+ + +++ LL+ 
  CDO73469.1  3 SPLWKACSEGNlETVVQ-LLQD 23
                799999*9999555556.6644 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.4e-07
                SBBHHHHHHHHTTHHHHHHHH.TTTST.TC CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnl.na 29
                G TPL  A+ ng+++i++ LL +GA++ na
  CDO73469.1 36 GVTPLIEAVKNGHVEIVRVLLdKGADPtNA 65
                99*******************88***9666 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5       5.1   8.3e+03       1       4 [.     175     178 ..     175     179 .. 0.84
   2 !   13.1   1.1   4.8e-05     0.078       9      19 .]     181     191 ..     180     191 .. 0.97
   3 !   20.8   2.1   1.8e-07   0.00029       1      19 []     402     420 ..     402     420 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.1
   zf_CCCH_4   1 Ckff 4  
                 C+++
  CDO73469.1 175 CRYY 178
                 8998 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.8e-05
   zf_CCCH_4   9 CkkGdkCrFaH 19 
                 C++G++C FaH
  CDO73469.1 181 CRYGASCMFAH 191
                 *********** PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.8e-07
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C ff  G+C++Gd CrF H
  CDO73469.1 402 CLFFPSGRCRNGDECRFPH 420
                 99***************99 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.2     1e-05     0.017       6      27 .]     175     193 ..     171     193 .. 0.82
   2 !   13.0   2.0   4.5e-05     0.073       3      26 ..     399     421 ..     397     422 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
                 BCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   6 CrffmrtGyCkyGdrCkFaHgq 27 
                 Cr++     C+yG++C FaH+q
  CDO73469.1 175 CRYYPA---CRYGASCMFAHPQ 193
                 555555...***********97 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.5e-05
                 CHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkFaHg 26 
                  ++C ff   G C+ Gd C+F H+
  CDO73469.1 399 KPPCLFFPS-GRCRNGDECRFPHV 421
                 688996666.***********885 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3       0.5   8.2e+02      80      91 ..     180     191 ..     168     198 .. 0.81
   2 !   19.7   0.5   6.6e-07    0.0011      69      95 ..     398     424 ..     375     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.5
                 --SSGGG-SSB- CS
       Torus  80 lCakGkkCeylH 91 
                  C +G++C + H
  CDO73469.1 180 ACRYGASCMFAH 191
                 6**********9 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 6.6e-07
                 T--B-HHHHHT--SSGGG-SSB-S--- CS
       Torus  69 esyfClfFarGlCakGkkCeylHrlPt 95 
                 ++  ClfF  G C +G +C++ H lP+
  CDO73469.1 398 GKPPCLFFPSGRCRNGDECRFPHVLPD 424
                 5677**********************7 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.8     0.036        59      12      29 ..     177     194 ..     174     197 .. 0.91
   2 ?    6.8   0.0    0.0046       7.5       8      27 ..     402     421 ..     398     429 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.036
   zf-CCCH_3  12 yystctkGdscpfrheea 29 
                 yy  c  G sc f h +a
  CDO73469.1 177 YYPACRYGASCMFAHPQA 194
                 9**************876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0046
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                 c ff    c  Gd+c f h 
  CDO73469.1 402 CLFFPSGRCRNGDECRFPHV 421
                 9999999**********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 3843.10
//
Query:       CDO73470.1  [L=368]
Description: hypothetical protein BN946_scf185013.g105 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-49  168.1   0.5      2e-49  167.5   0.5    1.3  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
    3.2e-30  105.2   0.0    5.6e-30  104.4   0.0    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    5.1e-06   26.2   0.0    1.1e-05   25.2   0.0    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
    3.8e-05   24.2   0.0    0.00028   21.4   0.0    2.4  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0018   18.4   0.0     0.0059   16.8   0.0    1.9  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.47   10.5   0.0    2.1  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.18   10.8   0.0       0.32    9.9   0.0    1.3  1  PDH             Prephenate dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.5   7.9e-53     2e-49       1     139 [.     195     333 ..     195     336 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 7.9e-53
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSSGGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHCT--HHHHHH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgakpetflglaglgDlivtctsgksRNrrfGeelgkgesleeiek 95 
                     D iGvelagalKNv+AiaaG++ glg+++nt+a+litrglaEm+r+++a+ga+p tfl lag+gDl++tc+s++sRN+++G++lg+ge+l+ i+k
      CDO73470.1 195 DPIGVELAGALKNVYAIAAGMAAGLGFENNTRAMLITRGLAEMTRIGTAYGASPLTFLTLAGVGDLFLTCSSSTSRNYTVGHRLGQGEKLDHIIK 289
                     89********************************************************************************************* PP

                     HHCC--HHHHHHHHHHHHHHHTT.G.HHHHHHHHHHHS---HHH CS
  NAD_Gly3P_dh_C  96 elnqvleGvetakevyellkkkgvemplleavykilyegkspee 139
                     +l+ v+eGv tak +++++++ gv  p+++ vy++lyeg  +ee
      CDO73470.1 290 TLGSVAEGVTTAKGLKAIVDELGVAAPIASGVYDVLYEGRAVEE 333
                     ***************************************99987 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   2.2e-33   5.6e-30       1     152 [.      12     171 ..      12     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 2.2e-33
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEE...S-HHHHHTT--EEEE---HHHHHHHHHHHCCC CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvat...tdlaealkgadiivlvvPsqalrevlkklkgl 92 
                     k+ v+GaG++G+ lA +l++  h v +w+r+e+l++++n+ h+n + L+++++ e+++a+       e +++ d++++++P++ +re+l+ lk++
      CDO73470.1  12 KVLVFGAGNFGSCLADHLGDSSHIVYMWSRSENLVKHFNQYHRNPEVLQDHQFAESITAVgpeFPPSELVQEMDVLLFAIPTEGVRETLTALKPT 106
                     689*******************************************************9732245799*************************** PP

                     -..-TT-EEEE---SEET.TTEEHHHHHHHHH-S--...EEEEESS--HHHHHTT--EEEEEEES CS
  NAD_Gly3P_dh_N  93 l..kkkailvsliKGieegtlkllsevieeelkeek...vavlsGpslAeEvakgkptavviask 152
                     l  +k   ++ + KGie +t  l+ e+i++  + +     +++sGps+A+E++k++pt+v + s 
      CDO73470.1 107 LdeTKLPLFIFVNKGIEIKTRALTLEIIADTCGPDIakvATFISGPSFAKEIVKRQPTSVSVVSL 171
                     *5444456899*********************9998887889*****************998775 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.2e-09   1.1e-05       1      96 [.      13     111 ..      13     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.2e-09
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCH...SCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTC CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsae...ekselepidlvivtvKayqteealeeikplldpn 95 
                 +++ GaG  Gs+la +L    + v+++ rs+  ++++++   + +  + ++++ ++ ++  +   +++  +++d++++++++  + e l ++kp ld++
  CDO73470.1  13 VLVFGAGNFGSCLADHLGDSSHIVYMWSRSEnLVKHFNQYHRNPEVLQ-DHQFAESITAVGPefpPSELVQEMDVLLFAIPTEGVRETLTALKPTLDET 110
                 689****************************88888777665444333.33333333332224566689***************************997 PP

                 E CS
        ApbA  96 t 96 
                  
  CDO73470.1 111 K 111
                 4 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   0.00028       2      89 ..      13     111 ..      12     116 .. 0.85
   2 ?   -1.6   0.0       1.6   4.1e+03      14      44 ..     154     181 ..     150     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC................-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg................vkvtavdneeaaeeadvvvlavkpedveevlsel 81 
                    + + GaGn+g+ la  l  +    h ++   sr+++ ++++ +                   v+ +  + +e+++e dv+++a+++e v e+l++l
     CDO73470.1  13 VLVFGAGNFGSCLADHLGDSS---HIVY-MWSRSENLVKHFNQYHRnpevlqdhqfaesitaVGPEF-PPSELVQEMDVLLFAIPTEGVRETLTAL 103
                    5578*************9998...7777.669999988888766669**********9977655555.89************************** PP

                    GHHHHTTS CS
  F420_oxidored  82 akdalkgk 89 
                    ++ +++ k
     CDO73470.1 104 KPTLDETK 111
                    77766655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
                    HHHHHHHTTS-GGCEEEEEESSCCCHHHHHH CS
  F420_oxidored  14 lasgllaagaqpheivvansrnpekaeelae 44 
                    +a+ ++++   p+++ v+ s +p+ ae++ +
     CDO73470.1 154 FAKEIVKRQ--PTSVSVV-SLSPSHAEQASQ 181
                    566666665..7888866.777777777655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.3e-06    0.0059       3      83 ..      14     110 ..      12     116 .. 0.87
   2 ?   -3.7   0.0       4.6   1.2e+04      14      38 ..     154     179 ..     150     183 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
                    EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.................EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC-- CS
  NAD_binding_2   3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.................akaaesieelvasldvvitmvkagkavdeviegllealk 81 
                     + G G+ Gs +a +l ++ + v+++ r+++ v+++ + +                 + +   ++elv+++dv ++ ++  + v+e+++ l+++l+
     CDO73470.1  14 LVFGAGNFGSCLADHLGDSSHIVYMWSRSENLVKHFNQYHrnpevlqdhqfaesitaVGPEFPPSELVQEMDVLLFAIPT-EGVRETLTALKPTLD 108
                    578**********************************9999999999999999988666677788999999999999997.789999999888887 PP

                    TT CS
  NAD_binding_2  82 kg 83 
                    + 
     CDO73470.1 109 ET 110
                    65 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.6
                    HHHHH.HHTT-EEEEE-SSHHHHHHH CS
  NAD_binding_2  14 malnl.lkagykvavynrtkekveel 38 
                    +a+++ +++  +v+v+ ++++++e++
     CDO73470.1 154 FAKEIvKRQPTSVSVVSLSPSHAEQA 179
                    56666235567788888888877765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018      0.47      11      57 ..       9      54 ..       2     118 .. 0.82
   2 ?   -3.3   0.0       3.5   8.9e+03      28      52 ..     155     179 ..     152     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelk 57
                  k++kvl+ GaG+ ++ +a hL +++   v    R+ + +k++ + ++
    CDO73470.1  9 KKSKVLVFGAGNFGSCLADHLGDSSHI-VYMWSRSENLVKHFNQYHR 54
                  689******************987766.8888888888887766553 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.5
                   HHHHHCCT-CEEEEEESSHHHHHHH CS
  Shikimate_DH  28 akhLlakgvkkvvvaNRtlerakel 52 
                   ak +++++ ++v v+  + ++a++ 
    CDO73470.1 155 AKEIVKRQPTSVSVVSLSPSHAEQA 179
                   7788888889999988888888764 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00013      0.32      38      73 ..      77     111 ..      57     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
                 S-GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT- CS
         PDH  38 ddieavkeadivvlavPvevilevlkelaphlkeda 73 
                 +  e v+e+d+ + a+P e ++e+l +l+p+l e+ 
  CDO73470.1  77 P-SELVQEMDVLLFAIPTEGVRETLTALKPTLDETK 111
                 4.589*************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2580.60
//
Query:       CDO73471.1  [L=343]
Description: hypothetical protein BN946_scf185013.g106 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-14   51.2   0.1    2.4e-13   49.9   0.1    1.8  1  SNARE            SNARE domain
    3.2e-07   29.4   1.9    3.5e-07   29.3   0.1    2.1  2  Syntaxin-5_N     Syntaxin-5 N-terminal, Sly1p-binding domain
     0.0001   22.4   0.2     0.0001   22.4   0.2    3.4  3  Syntaxin-18_N    SNARE-complex protein Syntaxin-18 N-terminus
    0.00017   21.3  15.4    0.00026   20.7   0.8    2.7  3  Syntaxin         Syntaxin
     0.0011   18.9   4.2     0.0011   18.9   4.2    2.9  3  FlxA             FlxA-like protein
      0.004   17.0   2.4      0.004   17.0   2.4    2.1  2  DUF1351          Protein of unknown function (DUF1351)
  ------ inclusion threshold ------
      0.032   13.3   0.1       0.24   10.4   0.0    2.0  2  DUF3626          Protein of unknown function (DUF3626)
      0.051   14.0   0.7         11    6.5   0.0    2.6  2  MtrB             Tetrahydromethanopterin S-methyltransferase 
      0.053   14.0   0.4      0.053   14.0   0.4    2.6  2  DUF16            Protein of unknown function DUF16
      0.062   13.9  10.2       0.15   12.7   0.9    3.0  2  SlyX             SlyX
       0.12   12.7   5.9       0.71   10.2   0.5    3.1  2  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.21   10.9  10.0       0.22   10.9   2.9    2.5  2  Cluap1           Clusterin-associated protein-1
       0.37   10.2   6.5        5.7    6.3   2.6    2.2  2  MIF4G_like_2     MIF4G like
       0.39   11.2   7.4       0.89   10.1   0.3    3.2  2  Spectrin         Spectrin repeat
        0.7    9.7   9.1        0.4   10.5   4.9    2.1  2  Mer2             Mer2
       0.95    9.6   9.4       0.24   11.6   0.7    2.7  3  End3             Actin cytoskeleton-regulatory complex protei
        1.2    9.3   5.2        1.6    8.9   1.2    2.4  2  AcylCoA_dehyd_C  Acyl-CoA dehydrogenase C terminal
        1.4    9.2   4.0        2.8    8.3   0.3    2.9  3  Osmo_CC          Osmosensory transporter coiled coil
          2    8.9   9.5        1.2    9.7   2.3    3.0  2  NPV_P10          Nucleopolyhedrovirus P10 protein
        6.1    6.9   9.9        3.4    7.7   0.8    2.9  3  DUF1664          Protein of unknown function (DUF1664)
        8.7    6.2  10.0        2.5    7.9   0.1    3.1  3  MSL1_dimer       Dimerisation domain of Male-specific-Lethal 


Domain annotation for each model (and alignments):
>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1   2.8e-16   2.4e-13       1      53 []     288     340 ..     288     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 2.8e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 e v+rId++  ++ snv++aq+eL k+  + +snR+l+ + +++l++++l+++
  CDO73471.1 288 ETVQRIDADTVDIASNVSGAQRELLKYYASISSNRWLMLKVFGVLIVFFLIFI 340
                 789************************************************96 PP

>> Syntaxin-5_N  Syntaxin-5 N-terminal, Sly1p-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   4.1e-10   3.5e-07       4      23 .]       1      20 [.       1      20 [. 0.95
   2 ?   -3.6   0.2       8.8   7.5e+03       7      10 ..     162     165 ..     162     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.1e-10
  Syntaxin-5_N  4 mSirDRTsEFqSivkslQkR 23
                  m ++DRT+EF+++v+s++ R
    CDO73471.1  1 MPVQDRTNEFRACVESIRNR 20
                  789**************988 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.8
  Syntaxin-5_N   7 rDRT 10 
                   +DRT
    CDO73471.1 162 KDRT 165
                   6**9 PP

>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   1.2e-07    0.0001       2      56 ..       5      58 ..       4      61 .. 0.84
   2 ?    1.6   0.1      0.39   3.4e+02       7      16 ..     105     114 ..      95     135 .. 0.58
   3 ?    0.6   0.2      0.82     7e+02       2      38 ..     142     172 ..     141     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.2e-07
  Syntaxin-18_N  2 DiTplFkasVktvkasssskseekeakkrkkkrlkkskekdeFikeAkeilkhIt 56
                   D+T++F+a+V+ ++++ss   ++ e +k++  + k + +k+eF++ A  i k I 
     CDO73471.1  5 DRTNEFRACVESIRNRSSFPVRGAE-QKQRLLQNKAEGSKSEFTRMASAIGKDIA 58
                   9************766677777666.55678888999**********99998886 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.39
  Syntaxin-18_N   7 FkasVktvka 16 
                     +a+Vk+ ka
     CDO73471.1 105 LQAYVKERKA 114
                    4666666643 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.82
  Syntaxin-18_N   2 DiTplFkasVktvkasssskseekeakkrkkkrlkks 38 
                    D +  Fk+++++       +++ ke+k+r ++ ++++
     CDO73471.1 142 DTSMTFKDVLEIR------TQNMKESKDRTEQFMHST 172
                    5666788888888......566677777777776665 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.57   4.9e+02      21      63 ..      31      73 ..      25      76 .. 0.69
   2 ?    5.5   6.8     0.014        12       4     123 ..      46     163 ..      43     180 .. 0.72
   3 !   20.7   0.8   3.1e-07   0.00026     162     199 ..     249     286 ..     238     287 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.57
    Syntaxin 21 evkklkkqneesktstraksvklkkrmesdikeikkraesvka 63
                + + l+++ e sk+  +++++ + k++ s++ +  k a+  k+
  CDO73471.1 31 KQRLLQNKAEGSKSEFTRMASAIGKDIASTTVKLGKLAQLAKR 73
                5556777777777777777777777777777777777766665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.014
    Syntaxin   4 ffkeveeikkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLdksnkenekks...gegsavdRirksqtaaLrkk 99 
                 f + +++i k+i++ + ++ kl +  ++ kt  +   v    ++++++  ik+   ++++++ +L+  +ke ++++    eg+  +  +  ++  L++k
  CDO73471.1  46 FTRMASAIGKDIASTTVKLGKLAQLAKR-KTLFDDRPV----EISELTYIIKQDIANINKQIAQLQAYVKERKAQNsksPEGKQLEEHNHNVVMLLQSK 139
                 6667778888888888888888777665.444455555....56777777888888888887777776666555544447888889999999999**** PP

    Syntaxin 100 lkevmteynelrekireeykerie 123
                 l ++ + ++++ e  ++++ke   
  CDO73471.1 140 LADTSMTFKDVLEIRTQNMKESKD 163
                 ********9987777777776544 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 3.1e-07
    Syntaxin 162 realseieeRhkevlelekslkeLhqlFldmavLVEeQ 199
                  ++ s i++R +++ ++e+ + eL q+F ++a +V eQ
  CDO73471.1 249 EQQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQ 286
                 4556779****************************999 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   4.2   1.3e-06    0.0011      11      92 ..      42     129 ..      32     134 .. 0.77
   2 ?   -3.1   0.3       9.6   8.2e+03      72      85 ..     157     170 ..     152     181 .. 0.42
   3 ?   -1.1   5.2       2.2   1.8e+03      34      80 ..     246     294 ..     237     310 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
        FlxA  11 sssgsasqiasLqkQiknlqkqLkelses.deltkeekk.....kqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskq 92 
                 s+s+ +   +++ k i++ + +L +l++  + +t  + +     +    i++ I ++++QIaqlq+  +e ++++++s + ++ ++++
  CDO73471.1  42 SKSEFTRMASAIGKDIASTTVKLGKLAQLaKRKTLFDDRpveisELTYIIKQDIANINKQIAQLQAYVKERKAQNSKSPEGKQLEEHN 129
                 5555666677888888888888888888775555444444556599999******************999999999999988887665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.6
        FlxA  72 qaekaqekqqseke 85 
                 + ++ ++  ++ ++
  CDO73471.1 157 NMKESKDRTEQFMH 170
                 33333333333333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
        FlxA  34 kelsesdeltkeekkkqqqliqaQIq...qlqaQIaqlqqqqaekaqekq 80 
                 + + ++ +   + +++ ++ i++ I    q+  Q+aq+ ++q+e  q+ +
  CDO73471.1 246 QLVEQQ-DSYIQSRSTAIESIESTIAelgQIFTQLAQMVAEQRETVQRID 294
                 444444.3444446666666776665111455688888888887766655 PP

>> DUF1351  Protein of unknown function (DUF1351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.4   4.7e-06     0.004      77     178 ..      83     182 ..      77     191 .. 0.87
   2 ?   -0.5   0.1         1   8.7e+02     138     160 ..     258     278 ..     237     319 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.7e-06
     DUF1351  77 kikelekkikeaidkideqikefeekekeekkkevkaliselaeeaeveleeieiqekwlnktvslkkieeeieaakaekikkdreelekakaeieeka 175
                 +i+el+ +ik+ i++i++qi ++    ke k ++ k+   +++ee++ ++ ++ +q+k    ++++k + e    + +++ k   e++  + a   ++a
  CDO73471.1  83 EISELTYIIKQDIANINKQIAQLQAYVKERKAQNSKSPEGKQLEEHNHNVVML-LQSKLADTSMTFKDVLEIR-TQNMKESKDRTEQFMHSTAAAASQA 179
                 5899*************************************************.***************9988.6666665555567777777777777 PP

     DUF1351 176 kaf 178
                  a+
  CDO73471.1 180 PAS 182
                 665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
     DUF1351 138 ktvslkkieeeieaakaekikkd 160
                  ++ +++ie  i  a++ +i  +
  CDO73471.1 258 RSTAIESIESTI--AELGQIFTQ 278
                 334444444444..222222222 PP

>> DUF3626  Protein of unknown function (DUF3626)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.27   2.3e+02     100     146 ..      16      67 ..      10     120 .. 0.78
   2 ?   10.4   0.0   0.00029      0.24      76     158 ..     224     305 ..     204     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.27
     DUF3626 100 evssrstftfgdse.....rapkekGtldefdailaalLeesferdvalGve 146
                 ++++rs+f   ++e      + k +G+ +ef  + +a+ +++++++v lG+ 
  CDO73471.1  16 SIRNRSSFPVRGAEqkqrlLQNKAEGSKSEFTRMASAIGKDIASTTVKLGKL 67 
                 5778888888888722222246789999999999999999999999999963 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00029
     DUF3626  76 aldllrasdGpapRFGsCylllrpevssrstftfgdserapkekGtldefdailaalLeesferdvalGvenlkvaklvella 158
                 aldl  a++G+ap  G  ++ ++  v ++ ++    s +  + + t++e  +i+  l + ++e++ ++ + + ++ ++ ++++
  CDO73471.1 224 ALDLGAAEEGAAPQHGDAFMQMQ-LVEQQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQRIDADTVDIASNVS 305
                 8******************9999.89****************************99999998888877777776666666654 PP

>> MtrB  Tetrahydromethanopterin S-methyltransferase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.013        11      26      60 ..      90     126 ..      80     140 .. 0.82
   2 ?    5.3   0.1     0.032        27      28      93 ..     269     338 ..     254     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
        MtrB  26 vvllsldpvleeidkLekiadd..lvnsLdpetalle 60 
                 ++  ++++++++i++L++++++    ns +pe++ le
  CDO73471.1  90 IIKQDIANINKQIAQLQAYVKErkAQNSKSPEGKQLE 126
                 8999***************997335677788877665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.032
        MtrB  28 llsldpvleeidkLekiaddlvnsLdpetallesy...pgRektlviaGlltnlfyGf.ivglviaalla 93 
                 + +l ++ ++++++ +   + v+ +d +t  ++s    ++Re   ++a++ +n +  + ++g++i++ l+
  CDO73471.1 269 IAELGQIFTQLAQMVAEQRETVQRIDADTVDIASNvsgAQRELLKYYASISSNRWLMLkVFGVLIVFFLI 338
                 5678889999999999999999999999987776633368*************88554334555544443 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   4.2      0.67   5.7e+02      52      77 ..      93     118 ..      51     169 .. 0.62
   2 ?   14.0   0.4   6.3e-05     0.053      24      70 ..     250     296 ..     242     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHHHHHHHHHHHHHHH. CS
       DUF16  52 kleqkvekqgekikelkveqkaqgee 77 
                 +   +++kq ++++   +e kaq+ +
  CDO73471.1  93 QDIANINKQIAQLQAYVKERKAQNSK 118
                 22233333333333333333333332 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.3e-05
                 HHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  24 qlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkve 70 
                 q + + +s  + ++ ie +++ lg+ + +l+q v +q e ++++ ++
  CDO73471.1 250 QQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQRIDAD 296
                 45679************************************887655 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6     0.014        12      22      59 ..      84     121 ..      66     129 .. 0.82
   2 ?   12.7   0.9   0.00017      0.15       4      47 ..     261     304 ..     259     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX  22 Lndvvaeqqqqidrlqrqlrllaerlkeleessgasea 59 
                  ++  +   q+i+ + +q+++l+  +ke+++++++s++
  CDO73471.1  84 ISELTYIIKQDIANINKQIAQLQAYVKERKAQNSKSPE 121
                 56666777899****************99999987775 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        SlyX   4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerl 47 
                  +e +E+ +a + +   +L ++vaeq+++++r+ +    +a ++
  CDO73471.1 261 AIESIESTIAELGQIFTQLAQMVAEQRETVQRIDADTVDIASNV 304
                 6999***************************9988776666665 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.6      0.09        77      64      82 ..      92     110 ..      27     114 .. 0.77
   2 ?   10.2   0.5   0.00083      0.71      49      93 ..     244     288 ..     239     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.09
     BLOC1_2  64 lqqidqiekqvteLeeavs 82 
                 +q i +i+kq+++L++ v+
  CDO73471.1  92 KQDIANINKQIAQLQAYVK 110
                 4566777777777776665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00083
     BLOC1_2  49 kleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEa 93 
                 +++ +++++  +q+  + i+ ie +++eL ++  +L +++ e+ +
  CDO73471.1 244 QMQLVEQQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRE 288
                 5778899999****************************9998765 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.9   0.00026      0.22     115     196 ..      35     117 ..      15     138 .. 0.83
   2 ?    4.2   0.2     0.029        25     149     208 ..     247     310 ..     217     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
      Cluap1 115 lssklsdlka.arqlaseitekgasLydlLekevelreartkalsrqleleeiekalkeaikkvkeelektkkalenlesdea 196
                 l++k++  k+   ++as i ++ as   +L+k  +l +++t    r++e++e+   +k+ i +++++++++++ +++ +++++
  CDO73471.1  35 LQNKAEGSKSeFTRMASAIGKDIASTTVKLGKLAQLAKRKTLFDDRPVEISELTYIIKQDIANINKQIAQLQAYVKERKAQNS 117
                 555555544314789***********************************************************998877665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.029
      Cluap1 149 lreartkals.rqleleeiekalke...aikkvkeelektkkalenlesdeanLeakiekkkqe 208
                 l e++++ ++ r++ +e+ie++++e     +++++ +++ ++ ++++++d   +++ +   ++e
  CDO73471.1 247 LVEQQDSYIQsRSTAIESIESTIAElgqIFTQLAQMVAEQRETVQRIDADTVDIASNVSGAQRE 310
                 4444454444377888888888775221567777888888888888888888777777666665 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.6    0.0067       5.7     152     226 ..      90     164 ..      83     191 .. 0.60
   2 ?    5.6   0.1     0.012       9.9     140     181 ..     252     293 ..     241     335 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0067
  MIF4G_like_2 152 llkrtlskvnkrvkkvrqeleelkkkeeeekakeeedkeeeeeleraeekleaaqkeqkelflivferlveilse 226
                   ++k+ + + nk++ +++  ++e k+++++  + ++ ++ +++ +  +++kl++ +  +k++++i ++ + e  + 
    CDO73471.1  90 IIKQDIANINKQIAQLQAYVKERKAQNSKSPEGKQLEEHNHNVVMLLQSKLADTSMTFKDVLEIRTQNMKESKDR 164
                   677888999999999****97777774444111333344444445555555555555555555544444443333 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.012
  MIF4G_like_2 140 knegltrayvwEllkrtlskvnkrvkkvrqeleelkkkeeee 181
                    ++  +r++++E++ +t+ ++ +  +++ q ++e++++ +  
    CDO73471.1 252 DSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQRI 293
                   56777899************************8888884443 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.084        72      78     102 ..      91     115 ..      52     115 .. 0.85
   2 ?   10.1   0.3     0.001      0.89      61     104 ..     246     291 ..     230     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.084
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  78 ieerleelnerWeeLkelaaerkqk 102
                 i++ ++++n++ ++L++ ++erk++
  CDO73471.1  91 IKQDIANINKQIAQLQAYVKERKAQ 115
                 7889999**************9975 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.001
                 H..HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  61 n..elaeklldeghsaseeieerleelnerWeeLkelaaerkqkLe 104
                 +  e++++ +++   a e ie++++el + + +L +++ae++++++
  CDO73471.1 246 QlvEQQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQ 291
                 44488888899999***************************99876 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.9   0.00047       0.4      81     164 ..      92     172 ..      35     179 .. 0.79
   2 ?    1.1   0.1      0.35     3e+02      85     163 ..     263     303 ..     232     321 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00047
        Mer2  81 nskekeikdlikdLsvkienqlskvskavldklkvkkhksntdtksnLtellekkeakileeidkkqtkleksvdttqelllnv 164
                 ++++ +i ++i +L++ +++ +++ sk+   k   ++h++n      L+  l+++   + + ++ + +++++s d t++++++ 
  CDO73471.1  92 KQDIANINKQIAQLQAYVKERKAQNSKSPEGKQL-EEHNHNV--VMLLQSKLADTSMTFKDVLEIRTQNMKESKDRTEQFMHST 172
                 5677888888888888888877777776654433.4555554..33567789999999999999999999*****999999986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.35
        Mer2  85 keikdlikdLsvkienqlskvskavldklkvkkhksntdtksnLtellekkeakileeidkkqtkleksvdttqellln 163
                 ++i + i                                       +l++ + ++ + + ++ + +++    t ++  n
  CDO73471.1 263 ESIESTI--------------------------------------AELGQIFTQLAQMVAEQRETVQRIDADTVDIASN 303
                 2222222......................................2333333333333333333333333333333333 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.4   2.9e+03     148     189 ..      31      72 ..      27      81 .. 0.68
   2 ?   11.6   0.7   0.00028      0.24     170     194 ..      91     115 ..      66     119 .. 0.86
   3 ?    2.7   0.3      0.14   1.2e+02     148     197 ..     243     292 ..     241     294 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.4
        End3 148 KeeqlreleegegkskeknlksvkedietveeqVegLesyls 189
                 K++ l+++ eg++++ +   + + +di++      +L +  +
  CDO73471.1  31 KQRLLQNKAEGSKSEFTRMASAIGKDIASTTVKLGKLAQLAK 72 
                 677777777777666556677788888877777777766444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00028
        End3 170 vkedietveeqVegLesylssrkee 194
                 +k+di+++++q+ +L++y+++rk++
  CDO73471.1  91 IKQDIANINKQIAQLQAYVKERKAQ 115
                 799*******************975 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.14
        End3 148 KeeqlreleegegkskeknlksvkedietveeqVegLesylssrkeeLeq 197
                  + ql e++++  +s+++ ++s+++ i+++ +  ++L + +++++e+ ++
  CDO73471.1 243 MQMQLVEQQDSYIQSRSTAIESIESTIAELGQIFTQLAQMVAEQRETVQR 292
                 67899999999999999***************99***9999999888775 PP

>> AcylCoA_dehyd_C  Acyl-CoA dehydrogenase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.2    0.0019       1.6      16     105 ..      83     171 ..      75     176 .. 0.84
   2 ?    1.4   0.1      0.38   3.2e+02      18      47 ..     259     288 ..     243     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
                      ---GGGHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHHHHH CS
  AcylCoA_dehyd_C  16 evseeleelkarlkemtekyeeavakVkeakdqelldflARrLvemaghiimsyLLledatraelFakSaevYvkyaeaevekhaefikn 105
                      e+se +  +k+ ++++ ++ +++ a+Vke k q+ +    ++L e   +++m +L  + a ++ +F++ +e+ ++  ++  +++++f+++
       CDO73471.1  83 EISELTYIIKQDIANINKQIAQLQAYVKERKAQNSKSPEGKQLEEHNHNVVM-LLQSKLADTSMTFKDVLEIRTQNMKESKDRTEQFMHS 171
                      5667777899***********************************9999988.4556667777999999999888888888888888776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.38
                      -GGGHHHHHHHHHHHHHHHHHHHHHHTT-- CS
  AcylCoA_dehyd_C  18 seeleelkarlkemtekyeeavakVkeakd 47 
                      s ++e+++++++e+ + ++++ + V+e+++
       CDO73471.1 259 STAIESIESTIAELGQIFTQLAQMVAEQRE 288
                      556677777788888888888887766654 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.4   6.4e+03      33      41 ..      69      79 ..      55      81 .. 0.65
   2 ?    8.3   0.3    0.0032       2.8      17      34 ..      91     112 ..      89     119 .. 0.83
   3 ?    0.6   0.2      0.79   6.7e+02      21      33 ..     262     274 ..     248     292 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.4
                H..HHHHHHHH CS
     Osmo_CC 33 e..kRqrLvdq 41
                +  kR++L d 
  CDO73471.1 69 QlaKRKTLFDD 79
                24588888775 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHH....H CS
     Osmo_CC  17 IEqkvedideeIaaLee....k 34 
                 I q + +i+++Ia+L++    +
  CDO73471.1  91 IKQDIANINKQIAQLQAyvkeR 112
                 789*************976643 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHH CS
     Osmo_CC  21 vedideeIaaLee 33 
                 +e i+  Ia+L +
  CDO73471.1 262 IESIESTIAELGQ 274
                 5666666666544 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.3    0.0014       1.2       8      36 ..      90     118 ..      86     160 .. 0.67
   2 ?    2.0   0.8      0.35     3e+02      28      61 ..     260     293 ..     244     307 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0014
     NPV_P10   8 vIradikavddkVdalqqqvddvqenlpd 36 
                  I++di+++++++  lq+ v++ +++  +
  CDO73471.1  90 IIKQDIANINKQIAQLQAYVKERKAQNSK 118
                 699*****************665543332 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.35
     NPV_P10  28 ddvqenlpdvtelnekLdaqsaqLaeletkvenI 61 
                 + +++   ++ el + + ++++ +ae  ++v+ I
  CDO73471.1 260 TAIESIESTIAELGQIFTQLAQMVAEQRETVQRI 293
                 3333333333334444444444444444444444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3      0.05        43      66     104 ..      72     110 ..      42     124 .. 0.60
   2 ?    1.5   2.1      0.33   2.8e+02      93     111 ..      92     110 ..      82     178 .. 0.60
   3 ?    7.7   0.8    0.0039       3.4      66     112 ..     260     306 ..     243     315 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.05
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 +r    d++  e +e++  ik++++++++++++++  v+
  CDO73471.1  72 KRKTLFDDRPVEISELTYIIKQDIANINKQIAQLQAYVK 110
                 444444555555555555555555555555555554443 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.33
     DUF1664  93 redlseigedvesvkeave 111
                 ++d+++i++++ ++++ v+
  CDO73471.1  92 KQDIANINKQIAQLQAYVK 110
                 3333333333333333332 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0039
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                   i+++++++ e  +i +++++ v+e re +++i+ d   + + v+g
  CDO73471.1 260 TAIESIESTIAELGQIFTQLAQMVAEQRETVQRIDADTVDIASNVSG 306
                 34666666666666666666666666666666666666666665555 PP

>> MSL1_dimer  Dimerisation domain of Male-specific-Lethal 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.6      0.14   1.2e+02      21      30 ..      29      38 ..      28      40 .. 0.92
   2 ?   -1.6   0.2       2.8   2.4e+03      20      33 ..      98     111 ..      95     112 .. 0.75
   3 ?    7.9   0.1     0.003       2.5      15      35 ..     243     263 ..     242     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.14
  MSL1_dimer 21 EQQQqqLqnK 30
                EQ Q+ LqnK
  CDO73471.1 29 EQKQRLLQNK 38
                9********9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.8
  MSL1_dimer  20 IEQQQqqLqnKnKE 33 
                 I  Q  qLq+  KE
  CDO73471.1  98 INKQIAQLQAYVKE 111
                 56677888887666 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.003
  MSL1_dimer  15 LQLdLIEQQQqqLqnKnKEId 35 
                 +Q+ L+EQQ   +q++   I+
  CDO73471.1 243 MQMQLVEQQDSYIQSRSTAIE 263
                 7**********9999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1537  (0.085727); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2300.87
//
Query:       CDO73472.1  [L=105]
Description: hypothetical protein BN946_scf185013.g107 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   46.1   0.8    5.3e-12   45.7   0.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.8     3e-16   5.3e-12      67     141 ..      14      87 ..       2      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3e-16
       DDE_3  67 flerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellk.rrsfks 141
                 +l +l +++l + +i++  Dn + H+++ ++e++e   ++l +l +Pp SP+lN+iE+vw  +k++l + r + ++
  CDO73472.1  14 LLGTLHDHRLGPSTIIFQHDNDPKHTARLVQEWLEH--QNLLVLPWPPSSPDLNIIENVWAEIKKRLETyRPRPRN 87 
                 5777888888988999999*****************..****************************9984555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 741.79
//
Query:       CDO73473.1  [L=332]
Description: hypothetical protein BN946_scf185013.g108 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-12   45.1   0.0    1.5e-11   43.9   0.0    1.7  1  RRM_1      RNA recognition motif. (a.k.a. RRM, RBD, or RNP do


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.6e-16   1.5e-11       1      69 [.     141     215 ..     141     216 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.6e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.......TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.......etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfVgnL +++t+e + ++Fsk+ p  +++l++         t kskgfafVeF+ k + ++ l+ l+ ++l+gr++
  CDO73473.1 141 LFVGNLKYTTTKEAVQQHFSKCDPPPTVRLMTPkpsansrPTAKSKGFAFVEFAHKNALQQGLK-LHQTELDGRKI 215
                 8*****************************98777888999***********************.*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1202  (0.0670422); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2224.27
//
Query:       CDO73474.1  [L=174]
Description: hypothetical protein BN946_scf185013.g109 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  122.4   0.2    1.4e-35  122.0   0.2    1.1  1  UQ_con    Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.014   15.3   0.0       0.02   14.7   0.0    1.3  1  UEV       UEV domain
      0.047   14.0   0.1      0.076   13.3   0.1    1.4  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.2   2.4e-39   1.4e-35       1     137 [.      27     156 ..      27     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 2.4e-39
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r+qk+l+el  + ps ++++  d  +l +++++i++ ++++Y+gg F ++++++++YP++pPkvk+++ i+HPnvd +G+vcl+iL+e+ W+p+l+l+s
  CDO73474.1  27 RVQKDLTEL--DLPSTMKTHFPDPADLLNFTLTITP-DEGMYKGGSFVFQFNINSNYPHEPPKVKCTQVIYHPNVDLEGNVCLNILRED-WKPVLNLNS 121
                 678888875..67778888888878*********99.**************************************************55.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvk 137
                 v++ +q L+ epn ++plnke   +lk++re++  +vk
  CDO73474.1 122 VMVGLQYLFLEPNADDPLNKE---ELKRNREQFIYNVK 156
                 *******************97...56677777777665 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.4e-06      0.02      53     113 ..      73     128 ..      37     139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-06
                 EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS.--TTT--HHHHHHHHHH CS
         UEV  53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLee.Wkreksnlvslvqelaq 113
                 ++ + ++yP e+P v  k t   ++  + nvd +G+v l++L+e Wk+   nl s++  l++
  CDO73474.1  73 QFNINSNYPHEPPKV--KCT---QVIYHPNVDLEGNVCLNILREdWKP-VLNLNSVMVGLQY 128
                 5668899****9976..333...556788*************862665.7887777766665 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05     0.076      46      78 ..      52      93 ..       6     125 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                ............TT-CEEEEEEEEE-SSTTSS--EEEEEECC CS
                x.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 46 e.........feekkkpslkleiklpeeYPeeaPiislsste 78
                              k  s+++++   ++YP+e+P+++ +   
  CDO73474.1 52 LnftltitpdEGMYKGGSFVFQFNINSNYPHEPPKVKCTQVI 93
                044444444334567889****************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1218.78
//
Query:       CDO73475.1  [L=378]
Description: hypothetical protein BN946_scf185013.g110 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-05   23.8   0.1    0.00017   22.3   0.1    1.9  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    0.00092   19.7   0.0     0.0016   18.9   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.32   11.3   0.0    1.8  1  NAAA-beta     beta subunit of N-acylethanolamine-hydrolyzing 


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   2.9e-08   0.00017       1      69 [.       6      78 ..       6     154 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.9e-08
      DIOX_N  1 iPvidlspl...sdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp 69
                +Pvidl  +   s d ++ aa++++  +A+ ++G +++    v+ee+ +  +++++++Fa+Pe+  ++ ++++
  CDO73475.1  6 LPVIDLDVFlaaSPDsDAFAAECKKAADALVSYGALLLHDSRVSEEDNNTFLNLIEDYFAQPEHLLKQDERPE 78
                7******98854222133466678888999********************************98766666665 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.7e-07    0.0016      19      99 ..     220     319 ..     190     321 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.7e-07
                   ---EEEEEESSSEEEEEEE-TT---EE.EE.TE..EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS................EEEE CS
  2OG-FeII_Oxy  19 ilglgahtdaslltillqddvgglevf.kd.gk..wlrvppvdnslivniGdallflsngryksvlHrVlpvneger................Rvsi 95 
                   ++  g htd ++lti   +   gl +  ++ gk   ++ pp  + l+v++G +l+ l++g  k   H+V  vn                    R+s+
    CDO73475.1 220 TILAGFHTDLNFLTIHGRSRYPGLNIWaRNtGKriPVKFPPAGRYLLVQAGKQLEHLTGGLIKAGYHEVV-VNDATLqaierrkaenpdrpliRISS 315
                   333699********9888889****964335775666777777**************************9.65522234555666778888888888 PP

                   EEEE CS
  2OG-FeII_Oxy  96 ayfi 99 
                   ++f 
    CDO73475.1 316 TFFW 319
                   8886 PP

>> NAAA-beta  beta subunit of N-acylethanolamine-hydrolyzing acid amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.3e-05      0.32      15      40 ..     158     183 ..     157     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
   NAAA-beta  15 eeRWtqvakdykpelksliqvlkdll 40 
                 +eRWt+++ + ++++k+++++l++++
  CDO73475.1 158 RERWTPIMEKWGTSMKNAVEDLAEMT 183
                 69********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3011.17
//
Query:       CDO73476.1  [L=782]
Description: hypothetical protein BN946_scf185013.g111 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-65  220.7   0.0      3e-59  200.7   0.0    2.2  2  Chorismate_bind  chorismate binding enzyme
    2.6e-31  108.9   0.0    3.8e-31  108.3   0.0    1.2  1  GATase           Glutamine amidotransferase class-I
    1.3e-18   67.6   0.0    5.4e-18   65.6   0.0    2.0  2  Anth_synt_I_N    Anthranilate synthase component I, N termina
    0.00079   19.2   1.1      0.005   16.6   1.1    2.0  1  Peptidase_C26    Peptidase C26


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   0.0   6.6e-63     3e-59       2     234 ..     458     705 ..     457     709 .. 0.90
   2 !   18.0   0.0   3.8e-07    0.0017     233     258 .]     743     768 ..     736     768 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.7 bits;  conditional E-value: 6.6e-63
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-H..........HHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETT..SEE CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdp..........lalyralrarnpapysflleledsellgaSPElllkvegg..rri 83 
                      r++Y ++++++ke + +gd+y+++++  + +++++  +p          ++ly++lr+rnpap s++l+l++s+ll++SPE++l+ ++   + +
       CDO73476.1 458 RAEYISKIHAAKEWLFSGDSYELCVTAPTHIRAAK--SPmavahgtsssWELYKTLRTRNPAPHSAYLRLHSSTLLSSSPERFLSYSRPpeSLC 549
                      789***********************999999444..333356666667************************************99548799* PP

                      EEECEEEEEEHSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--H.......H CS
  Chorismate_bind  84 etepiaGTrargktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvsl.......l 170
                      + +pi+GT  r+    + + +ee l++++Ke aE+lmivdlir+dL++v   + v+v++++kve+y++v++lvs ieg+ +++ +        +
       CDO73476.1 550 QLRPIKGTV-RKVPGITRAVAEEMLAGSRKEVAENLMIVDLIRHDLHSV-VGEDVHVRQFCKVEEYETVWQLVSVIEGKQSPHAKNqaqpdlgF 641
                      ********9.555566788889999************************.6999************************9877644335668899 PP

                      HHHHHCSS-CCCSEESHHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEE CS
  Chorismate_bind 171 dllkalfPtgavtGaPkkrameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkel 234
                      d+l+a +P+g++tGaPkkr++ei+++lE ++Rg+Y+G++gy+d+ g +++av+IR+ + +d+++
       CDO73476.1 642 DMLRASLPPGSMTGAPKKRSVEILRDLEGQERGIYSGVLGYADVGGGGDWAVIIRSCFKHDEQV 705
                      **********************************************************988766 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.8e-07
                      EEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 233 elrlgaGaGIvadSdpeaEyeEtlaK 258
                      e++lgaG++I+a Sdp aE+eE+ +K
       CDO73476.1 743 EWTLGAGGAITALSDPIAEWEEMVTK 768
                      589********************998 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   8.6e-35   3.8e-31       1     188 [.       8     202 ..       8     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 8.6e-35
                 EEEESSTSTHHHHHHHHHHTT..-EEEEEETTSHHHHHHH.THHSTSEEEEEEESSCTT....TTTHHHHHHHHCT....STS-EEEETHHHHHHHHHT CS
      GATase   1 lliDnydsvtenlvhalvelg..vkvevvpidasaeeile.llknpdgilvsgGpgspg....vegkieaikeare....nkiPiLGICLGmQllaief 88 
                 lliD+yds+++nl+    ++   ++v+++++d+     l  llk +d+ ++ +Gpgsp+    v     +++ +      + +Pi+G+CLG+Q la ef
  CDO73476.1   8 LLIDSYDSFSYNLAALCKRAIpgCDVHIIKNDTLPTSVLVpLLKYFDAAIIGPGPGSPEnpldV----GVVRDLWHieesSLLPIFGVCLGLQSLAVEF 102
                 58***********9877776345*********85555544579****************77532....333333222246789**************** PP

                 TTEEEEEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE....EEEEEEEETTTEEEESSBTTSTTSTTHHHHH CS
      GATase  89 grkvvkekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtaksedde....elmeiiekknpfvgvQFHPEststpegpell 183
                 g+ + + k   +hg+ + + +++t+++ g   ++++ ++H++ v  +   +++l+ +a+ +d e     +m++ + ++pf++vQ+HPEs+ t +g e +
  CDO73476.1 103 GARIKRLK-VVKHGQVSDVIHTGTDIFDGV-GPIHAVRYHSLHVSLS--GDEDLVPLAWADDAEengqVVMALKHVRKPFWSVQYHPESVCTSGGGEAI 197
                 ********.********************9.889***********84..45555555554443333449***********************9988766 PP

                 HHHHH CS
      GATase 184 fnfli 188
                  ++++
  CDO73476.1 198 LRNFW 202
                 55555 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.73   3.3e+03      37      93 ..     130     193 ..     128     194 .. 0.70
   2 !   65.6   0.0   1.2e-21   5.4e-18      15     142 .]     276     408 ..     268     408 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.73
  Anth_synt_I_N  37 gldpflelkskngeveveg........pegeeleeeepldalrellerfrsaedseptelpfvgG 93 
                    g+ p+  +++++  v+++g          ++++e+++++ al+++ + f+s+ + +p+++  +gG
     CDO73476.1 130 GVGPIHAVRYHSLHVSLSGdedlvplaWADDAEENGQVVMALKHVRKPFWSV-QYHPESVCTSGG 193
                    5667777778888888888777777643344444555999999999999976.667777777776 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 1.2e-21
  Anth_synt_I_N  15 ee.hkflLeSaeneggegrySfigldpfle..lkskngevevegpegeeleeee.....pldalrellerfrsaedseptelpfvgGlvGylgYDl 102
                    ++ + +lL+Sa      gr+S++g+  + +  +++  ge++v  ++ge+ +  e     +++ l ++++r r+     + e+pf gGlvGyl+Y+l
     CDO73476.1 276 DHqDFVLLDSAG--AAPGRFSIVGCLTHTSpkITYSIGESFVRIRQGEDVSFAElgssdIWAWLSAFMRRRRARGG--APEVPFWGGLVGYLSYEL 367
                    444789*****7..777********99666556677777777776677766666666779************5533..569*************** PP

  Anth_synt_I_N 103 .vreieklpksakddlnlpdarlilydtlivfDhkerrlyl 142
                      + ++ +p ++   l  pda l+++++ iv+D + ++ y+
     CDO73476.1 368 gAHTLTPIPPRPGSRLRHPDANLVFVERSIVIDSQSKKAYV 408
                    666677***99**************************9985 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.1   1.1e-06     0.005     106     216 .]      86     186 ..      76     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
  Peptidase_C26 106 vPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeD.....gvi 196
                    +Pi+g+C+Glq l+v +G ++ + ++        ++h q+    +v  +   ++  +   + ++  slH       +e+l   A+a+D     +v+
     CDO73476.1  86 LPIFGVCLGLQSLAVEFGARIKR-LK-------VVKHGQVS---DVIHTGTDIFDGVGPIHAVRYHSLHVSLS--GDEDLVPLAWADDaeengQVV 168
                    7****************976542.33.......34444433...55555666777777766677677765432..455666666665533322577 PP

  Peptidase_C26 197 EaieseeakafvlgvQwHPE 216
                     a+++ +  +++++vQ+HPE
     CDO73476.1 169 MALKHVR--KPFWSVQYHPE 186
                    7777766..579*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 5051.83
//
Query:       CDO73477.1  [L=1131]
Description: hypothetical protein BN946_scf185013.g112 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   18.4   0.4      0.036   14.3   0.1    3.5  3  HEAT       HEAT repeat
  ------ inclusion threshold ------
      0.061   12.9   1.5       0.15   11.6   0.4    2.0  2  TraC_F_IV  F pilus assembly Type-IV secretion system for plas


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.62   5.6e+03      11      28 ..     130     147 ..     128     148 .. 0.83
   2 ?   -3.3   0.0       1.9   1.7e+04       9      26 ..     920     937 ..     919     941 .. 0.78
   3 !   14.3   0.1     4e-06     0.036       3      30 ..     956     983 ..     955     984 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.62
                 -SSHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgala 28 
                 D + e   a++++L  l+
  CDO73477.1 130 DRDDETKVASVRCLRSLL 147
                 7888889999***99875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                 HT-SSHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLga 26 
                 l++ sp++R+  ++ L++
  CDO73477.1 920 LTHGSPQIRARILLLLTN 937
                 6788999**988887765 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 4e-06
                 HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalaev 30 
                 P++l+ l+D++ +V +aAa  ++ala++
  CDO73477.1 956 PFVLNRLNDSETFVVSAAAMLIAALAQH 983
                 89************************98 PP

>> TraC_F_IV  F pilus assembly Type-IV secretion system for plasmid transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.12   1.1e+03     152     205 ..     826     913 ..     807     917 .. 0.70
   2 ?   11.6   0.4   1.7e-05      0.15      57     185 ..     945    1075 ..     921    1098 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.12
   TraC_F_IV 152 lessLrsaglqarrldaedllawllrllnpdpaaeedaeasd...................................ydeekdlaeqlv 205
                 l +  r+a+ ++ ++d++  l+   ++l+++ ++e ++++                                      ++++ l +q+v
  CDO73477.1 826 LARKTRTAQETPYPVDDAKRLQAFAEWLKHRQDQEPPSTE-PvgdssypreawgktkedmngaedkdpqvpeddttpETPAQALTRQIV 913
                 6667788888899999999999999999999999555444.257777777777666666666666666666666666666666666666 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.7e-05
   TraC_F_IV   57 gtpvQfllfdspdideylealrdyrtqylreqeehlralarprglfldtgvtgslsarwrgqlRrf.....rlvlyrrvpgkaslsretpeeelnel 148 
                  ++ +  ++++ p++ + l+  +  +    ++ + +++ala++ g+f+ ++++  ++ r r qlRr         l+rr pg   +++       + l
  CDO73477.1  945 SALLPAVHQAWPFVLNRLNDSETFV---VSAAAMLIAALAQHAGDFMYRRIWDDVWPRFREQLRRLeradaSSALARRGPGGVGTES--AYTHSHRL 1036
                  4445566666666666666655555...78888899******************************988888899999999877766..67777777 PP

   TraC_F_IV  149 rerlessLrsa..glqarrldaedllawllrllnpdpaa 185 
                   + + ++L+++  g+qa++ ++ +++ + +r+l+ + + 
  CDO73477.1 1037 YRAILQTLTAVaqGVQAQETTNWEIVVLFRRFLHSQVHE 1075
                  777777777543378999999999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 7125.19
//
Query:       CDO73478.1  [L=649]
Description: hypothetical protein BN946_scf185013.g113 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-13   50.3   0.0    6.5e-13   49.3   0.0    1.4  1  Arrestin_C  Arrestin (or S-antigen), C-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   3.6e-17   6.5e-13       3     131 ..     263     419 ..     262     421 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3.6e-17
                 --EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS.................SEEEEEEEEEEEEE---............... CS
  Arrestin_C   3 gkvsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcafnr...............snkkeknvvaksdsvkv............... 71 
                 +kv+l+a+lp+ ++  G+   v+++++nd+kk+vk ++++lv++++ +  ++               +++ +++vva+s+ +k                
  CDO73478.1 263 NKVKLTAVLPRIAWLAGQRCYVHLSVANDTKKTVKGLTLTLVKTTTLFRPKPaldyghrssadpdacQTTTTHKVVAESILEKSqgvakghasaqgwwt 361
                 69************************************************99***************99999999999888888899************ PP

                 ..B-TTEE.EEEEEEE.----B-----S---EEEEEEEEEEEEEEESSEEEEEEEEEEEEEB CS
  Arrestin_C  72 ..tsaakdkletevelqiPeeltpssarnvelikvsYklkvkltlsgsggelslelPivlgs 131
                   +   ++  e++  + iP ++ +      +li v+Y ++v+l+ +  ++++ ++lP  +++
  CDO73478.1 362 gvS--GGQDAEFSHYVLIPSDALSVA--RARLIEVEYSIRVSLRAGPLASDVQVTLPLRVVN 419
                 544..555555557777**7777644..79****************9999*******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 4265.68
//
Query:       CDO73479.1  [L=319]
Description: hypothetical protein BN946_scf185013.g114 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-49  166.0   0.2    3.1e-48  164.4   0.0    1.7  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    8.1e-32  110.3   0.1    5.9e-28   97.7   0.0    2.1  2  adh_short     short chain dehydrogenase
    1.6e-05   24.9   0.1    5.5e-05   23.2   0.0    1.7  2  KR            KR domain
     0.0014   18.1   0.0     0.0019   17.6   0.0    1.2  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.21   9.3e+02       1      14 [.      60      73 ..      60      74 .. 0.89
   2 !  164.4   0.0     7e-52   3.1e-48      13     233 ..      90     316 ..      87     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
                  TTTTSHHHHHHHHH CS
  adh_short_C2  1 GaasgIGraiAkal 14
                  Ga sgIGr iA ++
    CDO73479.1 60 GADSGIGRSIALLF 73
                  888********876 PP

  == domain 2  score: 164.4 bits;  conditional E-value: 7e-52
                   HHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSE..E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHH CS
  adh_short_C2  13 alaeeGaevvltdlneea...kkrveelaeelgae..v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvn 102
                   ++a eGa++ lt+l++e+   ++ +e+++++++++  +  +e+D t+ee++++lv++  + +g+lD lv n g  ++ ++ + +++ e++++++++n
    CDO73479.1  90 QIALEGADLTLTYLSQERrdaEDMIETIKKRTNNArkInlVELDLTKEENCKKLVDKHLSFHGSLDALVLNHGTQNA-NTYLPSLPTEQWHETFNTN 185
                   56789*********99986555677888888774445578*************************************.7777889************ PP

                   THHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHH.GGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTT CS
  adh_short_C2 103 lyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvel.gpkgiRvNavspgpikTlaasgikgfdelleelearapl 198
                   ++s+f+++kaa+p++keg+ i   +s+   ++ p+   y+a+K+a+++++r+l +++ g+kgiR+Nav+pgpi T++  +   ++e +e++    p+
    CDO73479.1 186 IHSFFYICKAAIPHLKEGSTITFNASINMAVGHPELIDYTATKGAMIGFMRALSNQIvGDKGIRCNAVAPGPIWTPLIPATM-TKESIEQFGTTVPM 281
                   ******************************************************996277*****************88776.68889999****** PP

                   SS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 199 grlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   gr+g+p eva a ++L s ++sy++Gq+++v+gG+
    CDO73479.1 282 GRAGQPVEVATAFVWLTSADSSYVSGQIIHVNGGV 316
                   **********************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1     6e-05      0.27       2      19 ..      55      72 ..      54      76 .. 0.88
   2 !   97.7   0.0   1.3e-31   5.9e-28      31     187 ..     104     263 ..      86     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6e-05
                EEEEESTTSHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiake 19
                 +++tGa+sGIGr ia  
  CDO73479.1 55 KAIITGADSGIGRSIALL 72
                69*************965 PP

  == domain 2  score: 97.7 bits;  conditional E-value: 1.3e-31
                 ESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHH CS
   adh_short  31 drseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselseeewervievNltgvflltravlpamlk 125
                 +++ +++e +++ +k+    ++k+  +++D+t++e++++lv+k  + +g+ld+Lv N G  + ++   +l  e+w +++++N+++ f +++a++p+++ 
  CDO73479.1 104 SQERRDAEDMIETIKKRtnnARKINLVELDLTKEENCKKLVDKHLSFHGSLDALVLNHGTqNANTYLPSLPTEQWHETFNTNIHSFFYICKAAIPHLK- 201
                 33444455555555544444999*************************************66677788999999**********************87. PP

                 CTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHH.GGGTEEEEEEEESSBSSHHH CS
   adh_short 126 qssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakel.aptgirvnavaPGlvdTdma 187
                  ++ +I + +S++  v+ ++++ Y+A+K+a++g++r+l++++  ++gir+navaPG++ T++ 
  CDO73479.1 202 -EGSTITFNASINMAVGHPELIDYTATKGAMIGFMRALSNQIvGDKGIRCNAVAPGPIWTPLI 263
                 .778999********************************99725566***********99975 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.34   1.5e+03       4      17 ..      57      70 ..      55      73 .. 0.90
   2 !   23.2   0.0   1.2e-08   5.5e-05      22     166 ..      93     241 ..      84     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.34
                EEETTTSHHHHHHH CS
          KR  4 litGGlGgLGlela 17
                +itG+  g+G+++a
  CDO73479.1 57 IITGADSGIGRSIA 70
                8**********997 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.2e-08
                 HHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT--HHHHHHHHTTTTHHHHH CS
          KR  22 ekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklleemtaedleqvlapKvkGawn 118
                  +g   +l +ls + +  ed+ ++i++ +++  ++++v++D++++++ ++l+++  + ++++   +   g+ + ++ l ++ +e++++ ++  ++    
  CDO73479.1  93 LEGaDLTLTYLSQERRDAEDMIETIKKRTNNARKINLVELDLTKEENCKKLVDKHLSFHGSLDALVLNHGTQNaNTYLPSLPTEQWHETFNTNIHSFFY 191
                 455245788899887777888888888888888***********************999****9887777665388899*******************9 PP

                 HHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHH CS
          KR 119 Lhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsq 166
                 + ++  +  ++   +++ +Si   +g+++  +Y+a+   + ++++  ++q
  CDO73479.1 192 ICKAAIPhlKEGSTITFNASINMAVGHPELIDYTATKGAMIGFMRALSNQ 241
                 98887766899999**********************99998888877665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.2e-07    0.0019     108     185 ..     170     242 ..     106     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.2e-07
     DUF1776 108 ietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrel 185
                 +  +p ++w++++n+++ s++ + +a +p+l++       +i +n+si  ++  p+    + + +a+  ++++L++++
  CDO73479.1 170 LPSLPTEQWHETFNTNIHSFFYICKAAIPHLKE-----GSTITFNASINMAVGHPELIDYTATKGAMIGFMRALSNQI 242
                 56799***************************7.....669*************999999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2304.28
//
Query:       CDO73480.1  [L=465]
Description: hypothetical protein BN946_scf185013.g115 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-49  166.2   0.7    5.9e-49  165.8   0.7    1.2  1  Vta1      Vta1 like
    3.7e-16   58.5   0.1    3.7e-16   58.5   0.1    2.4  3  Vta1_C    Vta1 C-terminal domain


Domain annotation for each model (and alignments):
>> Vta1  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.7   6.6e-53   5.9e-49       2     145 .]      15     161 ..      14     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 6.6e-53
        Vta1   2 iapflkrakelekadpvvaYycrlyaveqilkkklkrkdkeakefltkLldklEqlKkelkendaiedeeaakayvenfalklfnkadkedragkatka 100
                 ++p+l+ra+el+ ++pv+aY+c +ya++q+++  lk kd++a+ fl++Ll  lE++K+el +nda++de+a++ayvenfal++f++ad edr+g at++
  CDO73480.1  15 VSPYLQRAHELSLKEPVIAYWCAYYAAQQGIA--LKVKDSNARHFLFELLGLLENMKSELGSNDAVHDESASAAYVENFALRVFAAADSEDRKGAATRN 111
                 78******************************..6677999********************************************************** PP

        Vta1 101 taktflaaatlfevlklfge.....ldeeikkkikyakwkaarilkalke 145
                 ta++flaaa+++evl++f++     +  +i++kikyakwkaa+i kal+e
  CDO73480.1 112 TARKFLAAANFLEVLRVFESdkagiDLPSIEEKIKYAKWKAADISKALRE 161
                 *******************64777777788*****************986 PP

>> Vta1_C  Vta1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.1     9e+02      24      33 ..     111     120 ..     110     126 .. 0.88
   2 ?   -3.2   0.1      0.78     7e+03       8      13 ..     145     150 ..     141     150 .. 0.80
   3 !   58.5   0.1   4.1e-20   3.7e-16       2      38 .]     428     464 ..     427     464 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.1
      Vta1_C  24 etAiknLqeA 33 
                 +tA+k+L +A
  CDO73480.1 111 NTARKFLAAA 120
                 8******988 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.78
      Vta1_C   8 qKhaKf 13 
                  K+aK+
  CDO73480.1 145 IKYAKW 150
                 599999 PP

  == domain 3  score: 58.5 bits;  conditional E-value: 4.1e-20
      Vta1_C   2 eqiaeAqKhaKfAiSALqYeDvetAiknLqeALklLt 38 
                 +++a++qKh+++AiSAL+YeD e+Aik+L+ AL++L+
  CDO73480.1 428 QAVARVQKHCRYAISALDYEDAEQAIKELRTALRMLG 464
                 7899*******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3153.57
//
Query:       CDO73481.1  [L=271]
Description: hypothetical protein BN946_scf185013.g116 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-20   72.1   4.6    9.9e-13   47.5   1.5    2.8  2  Pectinesterase  Pectinesterase


Domain annotation for each model (and alignments):
>> Pectinesterase  Pectinesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   1.5   5.5e-17   9.9e-13      27     157 ..      45     173 ..      28     178 .. 0.85
   2 !   23.9   0.1   8.5e-10   1.5e-05     205     239 ..     191     225 ..     173     248 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 5.5e-17
                     SS-EEEEE-SEEEE--EEE-TTS-SEEEEES-TTTEEEEE---TTTT--SGGG-SEEE-STT-EEES-EEEE---G..GG----SEEE--TTEEE CS
  Pectinesterase  27 ekrfviyvkaGvYeenvevekkktnvvlvGdGkektvitgsknvvdgkttfktatvavvgegfiarditfentaGp..ekhqavalrvdsDlsvf 119
                     ++  + ++  G+Y+++  +++   nv ++G+       tg+++v+ ++    + tv v+++++   ++ + nt G   ++ qa+al v++ +   
      CDO73481.1  45 TSSEIYFIFPGTYTDTAIITR--PNVRIYGQTDVPNSYTGNTSVAGSND--ASGTVQVHAANVSLYNLNIANTYGKpvDQAQAIALSVQAGQFGA 135
                     33446677899**99998875..8999*************966655554..699*********************63367899************ PP

                     ES-EEE-STT-EEE-SSEEEEES-EEEESSS-EEE--E CS
  Pectinesterase 120 yrcslegyqDtlyvhskRqfyreceitGtvDfifGnaa 157
                     y  +++g qDtl +    q+y ++ i G+vDf +G++ 
      CDO73481.1 136 YGLKITGDQDTLLANDGAQYYANSWIEGAVDFTIGDGF 173
                     ***********************************985 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 8.5e-10
                     TGGGTTTS-EEEE--SSTT-EEEEES-EE-TTB-T CS
  Pectinesterase 205 llavkkkvktyLGRPWkeysrtvimeskiedvidp 239
                       +v+ + k++LGRPW++++r+v+ +s++++ ++ 
      CDO73481.1 191 SSTVQGTGKAFLGRPWRDFARVVFQKSTLGSNVTD 225
                     445677889********************988864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2059.81
//
Query:       CDO73482.1  [L=304]
Description: hypothetical protein BN946_scf185013.g117 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.52    9.6   1.9       0.95    8.7   1.9    1.4  1  MSP1a     Major surface protein 1a (MSP1a)


Domain annotation for each model (and alignments):
>> MSP1a  Major surface protein 1a (MSP1a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.9   5.3e-05      0.95     176     236 ..      28      91 ..       6     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 5.3e-05
       MSP1a 176 avPasdqqpdv..reavasgGsqedsaqvpttsvPaaessavaPdtivvsv.spdsvatlGagv 236
                  + ++d q+ +      +sgGsqe s +  + s   a+s+a +P+t   +  +p s a +G  v
  CDO73482.1  28 PAAVADSQKMApkLSLSPSGGSQERSERPASPSLGGARSAASSPGTAQEALyDPFSGALVGVMV 91 
                 333344444331045679**********999***************988876777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1998.76
//
Query:       CDO73483.1  [L=190]
Description: hypothetical protein BN946_scf185013.g118 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.6   0.0       0.23   12.0   0.0    1.3  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.3e-05      0.23      23      66 ..      58      97 ..      51     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
                EEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHT CS
     RNase_T 23 aisidggeneigetfhfyvkptelakltdecteftgitqemlde 66
                ++ ++ ++  +   f+++v pt++  +td+ t++tgi  ++l++
  CDO73483.1 58 RVAVVDYR--GQVLFSTHVLPTNP--VTDYRTSMTGIQAADLQP 97
                56666666..57779*********..************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1391.58
//
Query:       CDO73484.1  [L=387]
Description: hypothetical protein BN946_scf185013.g119 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   14.3  12.1        2.4    8.4   0.0    4.7  4  TetR_C_6  BetI-type transcriptional repressor, C-terminal
       0.23   11.7   0.0       0.73   10.1   0.0    1.9  2  PPR_2     PPR repeat family


Domain annotation for each model (and alignments):
>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2   0.00054       4.8       2      40 ..      63     104 ..      62     110 .. 0.88
   2 ?    8.4   0.0   0.00027       2.4      62     111 ..     143     191 ..     107     193 .. 0.89
   3 ?   -0.0   0.1      0.11   9.9e+02      34      68 ..     201     233 ..     195     245 .. 0.71
   4 ?    2.4   0.8     0.019   1.7e+02      20      53 ..     281     314 ..     272     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
                 HHHHHHHHHCCSTHSHHHHH...HHHHHHHHHHHHTT-HHHH CS
    TetR_C_6   2 rerlraileallpldqerra...elavwlafwaeaardpela 40 
                 r+ l++++++ +p+d e+r+    + v   fw +a ++++++
  CDO73484.1  63 RDLLDRMVREGVPGDVETRTlrvRCLVRTGFWKQAWHEEAVR 104
                 7889**************9665689999***********998 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00027
                 HHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH CS
    TetR_C_6  62 aegglradadaeaaAerlaAlidGLwlraalapeeldaeraralvrrhld 111
                  + g +++ d+  +Aerl Al++   l +a + e+++++ ++ +vr +++
  CDO73484.1 143 KP-GMLEPPDPSVIAERLDALVHHYPLVTAADLEQVPPRVVYSIVRSFIA 191
                 44.667899****************99999999*************9997 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.11
                 TT-HHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCT CS
    TetR_C_6  34 ardpelaelqrenyarlrsnlralla.elaegglra 68 
                 ++ + +a l +++++++r+ +  ++  +l +   r+
  CDO73484.1 201 LTADYFATLPHQLDEEWRRSCMSIIHlHLKP---RR 233
                 5666788889999999999999998866666...33 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
    TetR_C_6  20 raelavwlafwaeaardpelaelqrenyarlrsn 53 
                 +a ++ ++  w++  +d++++++++ ++ r r  
  CDO73484.1 281 DAVVRGFVKHWGSDIVDDAVRRRLASYWLRERKP 314
                 457777889999999*************999875 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   8.2e-05      0.73       2      42 ..      42      82 ..      41      90 .. 0.90
   2 ?   -3.4   0.0       1.3   1.2e+04      32      40 ..     254     262 ..     246     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.2e-05
       PPR_2  2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTys 42
                ++ ++N l++   ++  +    +l++ M++ g++ ++ T +
  CDO73484.1 42 STASFNLLMKFAIRHASFGTVRDLLDRMVREGVPGDVETRT 82
                5789******************************9999865 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
       PPR_2  32 rglePnsyT 40 
                 r ++Pns T
  CDO73484.1 254 REFRPNSTT 262
                 678899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2631.19
//
Query:       CDO73485.1  [L=408]
Description: hypothetical protein BN946_scf185013.g120 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-15   56.8   0.1    4.3e-13   49.4   0.0    2.7  2  Cut8      Cut8, nuclear proteasome tether protein


Domain annotation for each model (and alignments):
>> Cut8  Cut8, nuclear proteasome tether protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   2.4e-17   4.3e-13       3     148 ..      67     273 ..      65     281 .. 0.84
   2 !    4.1   0.0    0.0017        31     189     234 ..     341     386 ..     308     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2.4e-17
        Cut8   3 kRkrlsledeeesqdsedetspskkkskpslss....ssk............krsrtpkisgqpLplsrlLetLdkeqLqsllqslveehpeleqevsk 85 
                 kR++  +ed+ +  + + e sp++++ k ++ +    +              k ++ ++    + ++  lL +L  ++L  ll+sl++ +p+l+ +v +
  CDO73485.1  67 KRRYEPDEDDLD--E-SMERSPTPERAKRAIPKrartT-PtlvtigkdqqasKENKQAQNDDSEVDVGFLLASLPPQSLLPLLTSLLTAQPSLKPTVLS 161
                 788844433333..3.3455666666666666655441.1456666666676555666689999*********************************** PP

        Cut8  86 kapkpsiesllelLkekkenilkslPykg.................................................dkeddyaYlRvkphLleFlnc 135
                  +p+p+++ +l+ L +  +++ ++ Py++                                                   +d+y  +R++ph++eF+++
  CDO73485.1 162 LIPRPTLDAALDSLARSAQKLKDAYPYSNpvfspsggawnnaggfsgsrsspfstgfgfgsrpggssnfgpsstppggGMRDEYILSRIRPHIQEFVSA 260
                 ****************************66789****************************************************************** PP

        Cut8 136 LsDfilnflppne 148
                 +  +++ f     
  CDO73485.1 261 CLSYLPYFSSVST 273
                 ****999875555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0017
        Cut8 189 nawltvikeaakdgggllkkleleeweekLkkhneesegklqkvle 234
                 +aw+  + ++ +++gg+++ ++++ we+ L ++ +  +++++++ e
  CDO73485.1 341 QAWIDHVDDSVNEQGGMYGRETVQTWERGLDEFAQAKGNEMEMMKE 386
                 45666666667779**********************9999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3230.67
//
Query:       CDO73486.1  [L=804]
Description: hypothetical protein BN946_scf185013.g121 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.7e-149  498.1  10.7   3.4e-149  497.8  10.7    1.1  1  Cas1_AcylT   10 TM Acyl Transferase domain found in Cas1p
     0.0011   18.8   0.0     0.0017   18.2   0.0    1.2  1  PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr


Domain annotation for each model (and alignments):
>> Cas1_AcylT  10 TM Acyl Transferase domain found in Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.8  10.7  3.8e-153  3.4e-149       3     467 ..     249     689 ..     247     695 .. 0.96

  Alignments for each domain:
  == domain 1  score: 497.8 bits;  conditional E-value: 3.8e-153
  Cas1_AcylT   3 fndgtCCssaesltllqilllavlavavllllvlllekrkkkkekaeaeevesseekkelltlllalaklglilvyfylcDRtnlfmKenKvyselsfl 101
                 ++d+tCC+++++ ++l+ l+la +   +l+++v++l +r+ + +++ +  ++++e         ++   l+ +++ +y++DRt ++ Ke+K+++ ++f 
  CDO73486.1 249 PMDKTCCRTYPWPSMLHLLVLAGV---ILWAPVNWLLARRFSPQSSGMPLLRDDE---------IPGLALSFAAAIIYVADRTGFWLKEQKQFDPWTFG 335
                 68*****************99998...9************************997.........677789999999*********************** PP

  Cas1_AcylT 102 lpillvlvlglfftee.skeskvLnRdQtdEwkGwmqlviLiYhltgaskvlpiymvvrvlvaaYlFltgyghfsyflkkgdfslkrlvqvlfrlNlLt 199
                 ++ ll l+lgl+++++ +++  +LnR+QtdEwkGwmq+ iLiYh+tgask+  iy+ +rvlvaaYlF+tgygh++y++kk df+l r++qvl+rlNlLt
  CDO73486.1 336 FLCLLSLALGLVTVKRaDNDLGFLNREQTDEWKGWMQIAILIYHYTGASKISGIYNPIRVLVAAYLFMTGYGHTTYYVKKADFGLLRIAQVLVRLNLLT 434
                 **************9988899****************************************************************************** PP

  Cas1_AcylT 200 vvLclvmnrpYqfYyfvpLvsfWflvvyltlavlpkvtkasaeanalqylylvlkivvlltvitilvlsevlfekvfelrplkalftvddsvrewrfrl 298
                 ++L+++mn++Y +Yyf+pLvs+W++++y t+a+  + ++++        ++l+ ki++++ ++t+l+++ +l++++f++  l++++++ +s rew fr+
  CDO73486.1 435 LLLAYTMNTDYLYYYFAPLVSWWYMIIYGTMALGSRYNERT--------VFLLTKIFLSMAFVTWLMSEPWLLQTIFQF--LERFCNIRWSAREWAFRV 523
                 ********************************999998888........99****************************..****************** PP

  Cas1_AcylT 299 kldryvvliGmlfalallllkrvsvlddnkeenllsrkvslilllvalvvllvylvfaalckdkqecneihsyisvlpivafvilRNisgvlRsryssf 397
                 +ld ++v++Gml+ala++++++++++d+ +   +       + ++++ v+ll++++f+ +  dk ++n++h+y+s+lp+ afv+lRN++ +lRs+ s++
  CDO73486.1 524 SLDLWIVYFGMLAALAVIKAREHRITDHPRWPLV-----VKTSSALSAVILLWFFAFELSQPDKFAYNAWHPYVSFLPVGAFVVLRNANAILRSASSRM 617
                 ***************************9884444.....445667778999************************************************ PP

  Cas1_AcylT 398 fawlGkiSLElfilqyHiwLAaDtkGvLvlipg..ypvlnvvlttfifvcvshevseltnklvkllvpkdkk 467
                 fa++G++SLE+fi+q+H+wLA+DtkG+L++ipg   + ln++ltt++f++vsh v+++t++++++++++ k 
  CDO73486.1 618 FAFIGRCSLETFIIQCHLWLAGDTKGILMVIPGrhSRPLNLLLTTIVFIYVSHLVAKATGEFTNWICGSAKP 689
                 ********************************96559******************************99875 PP

>> PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.9e-07    0.0017       7      82 ..       8      80 ..       4     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.9e-07
  PC-Esterase  7 aefLellrgkrlafVGDSlarnqweSLlClLssavedpkkvykikkkkklrrfrfpeynvtvefywspflveseek 82
                 +++ + +  +r++f+GDS+ r+ +  +  ++  ++++     +++++k+   ++ +++++++ fyw p+l + +++
   CDO73486.1  8 KDVATCMASRRVVFIGDSVTRQLFFQFAHVVDPSLPTGP---PDDEQKHADYIYTSSTDIQLVFYWDPYLTSNHTR 80
                 566678899**********************99988444...34455556677789**************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5934.13
//
Query:       CDO73487.1  [L=375]
Description: hypothetical protein BN946_scf185013.g122 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-33  113.5  15.3    8.2e-33  113.5  15.3    1.5  2  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
          3    7.2   7.0        4.2    6.7   5.8    1.9  2  TssN      Type VI secretion system, TssN


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5  15.3   9.1e-37   8.2e-33       3     147 ..     170     310 ..     168     313 .. 0.95
   2 ?   -1.5   0.0      0.24   2.2e+03      88     115 ..     311     340 ..     306     354 .. 0.52

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 9.1e-37
                 GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS---- CS
    Rhomboid   3 krgelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaesesplvGaSGaifgllgallvlvprnrkllrkli 101
                 ++++++r++t +flHag++H+l+Nmla+l   +++er++G+  fl+ly+++g++g++l   fs  +  p+vGaSGaifg +++++v  + ++++  ++ 
  CDO73487.1 170 APNQWFRFITPIFLHAGVIHFLLNMLAQLTASAQVEREMGTISFLVLYAAAGIFGNVLGGNFSLVG-VPSVGASGAIFGTVAVAWVDLFAHWRYQYQPG 267
                 689************************************************************997.7****************************999 PP

                 HC...CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHCC CS
    Rhomboid 102 iallllllfillnlvlgllpraggvsnlAHlgGllaGlllgllllr 147
                  +l+++++ +++ +++g++p    v+n+AHlgGl++Gll+g+ l++
  CDO73487.1 268 KKLVFMIIELIIGVAIGFIPY---VDNFAHLGGLAMGLLVGMALYP 310
                 999999999999999999997...8***************998875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
                 HHHHCCCCGS----HC.....CCCCCCCCC CS
    Rhomboid  88 vlvprnrkllrkliia..llllllfillnl 115
                 + +p+nr++  ++ +    + l++++++ l
  CDO73487.1 311 IISPSNRHRTIVITLRviAVPLAVVMFVVL 340
                 556667776666666622222222222222 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4     0.014   1.3e+02      48     101 ..     159     216 ..     151     226 .. 0.61
   2 ?    6.7   5.8   0.00047       4.2      35     140 ..     208     317 ..     175     335 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.014
        TssN  48 gllgf..lknefvpygyillqilylllGilhl..ylllkkffkelkekkilfeilltl 101
                  + gf  ++ e    ++ +++ ++l  G++h   ++l +  +++  e++++   +l+l
  CDO73487.1 159 DICGFggFHGEAPNQWFRFITPIFLHAGVIHFllNMLAQLTASAQVEREMGTISFLVL 216
                 4555555667778899999**********99511444555555555555444433333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00047
        TssN  35 iyiLlaglvlalpgllgf.lknefvpygyillqilylllGilhlyl..llkkffkelkekk.ilfeilltlivillglvlfvlvfnllselqygvwaat 129
                 +  +++++++a  g++g  l+ +f ++g   +     ++G++ +    l+ + + +++  k ++f i+ ++i +++g++++v  f +l +l +g+++  
  CDO73487.1 208 MGTISFLVLYAAAGIFGNvLGGNFSLVGVPSVGASGAIFGTVAVAWvdLFAHWRYQYQPGKkLVFMIIELIIGVAIGFIPYVDNFAHLGGLAMGLLVGM 306
                 4456788999*******99*********************9998731123333333333334788888888999999999***********99999999 PP

        TssN 130 sllvfiipllf 140
                 +l + i p+  
  CDO73487.1 307 ALYPIISPSNR 317
                 88888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2427.34
//
Query:       CDO73488.1  [L=361]
Description: hypothetical protein BN946_scf185013.g123 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0076   16.0   0.0      0.012   15.4   0.0    1.3  1  SnoaL     SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.8e-07     0.012      55     124 ..     245     316 ..     232     318 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.8e-07
                 TTCEEEEEEEEEETTEEEEEEEEEEEESSEBT....TBE-TT-EEEEEEEEEEEEETTEEE.EEEEEECHHHHHH CS
       SnoaL  55 PDlkvevedlvaegdkvaarltftGthtgefl....GipptGkkvkfeeitllrvedGkIv.eewdviDllgllr 124
                 PD ++ + +  +  d++  ++ f++tht e+     Gi+ptGk++++  + ++ ++ +k   e+w   D+++ll 
  CDO73488.1 245 PDTELITISRTVGADRIIDEMIFKCTHTTEIDyflpGIKPTGKPLEIALVGVVAFRGDKLTfEYW---DQASLLV 316
                 66666333344456899***********998633346**********************963455...5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2929.58
//
Query:       CDO73489.1  [L=866]
Description: hypothetical protein BN946_scf185013.g124 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-28   98.6   0.4    4.6e-28   97.5   0.4    1.6  1  DIL       DIL domain
    3.9e-07   30.6   0.0    9.6e-07   29.3   0.0    1.6  1  Ank_2     Ankyrin repeats (3 copies)
    1.3e-06   28.8   0.0    1.7e-05   25.3   0.0    2.7  2  Ank_4     Ankyrin repeats (many copies)
    4.7e-06   26.8   0.0    1.1e-05   25.6   0.0    1.6  1  Ank_5     Ankyrin repeats (many copies)
    5.5e-06   26.6   0.2     0.0023   18.3   0.1    3.4  3  Ank       Ankyrin repeat
    0.00032   20.9   0.0     0.0078   16.6   0.0    3.0  2  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> DIL  DIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.4   1.5e-31   4.6e-28       1     103 [.     491     594 ..     491     595 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 1.5e-31
                 HHHHHHHHHHHHHHHHHHHHHS-SB-HHHHHHHHHHHHHHHHCCTS-.....-GGGGHHHHHHHHHHHC-S-..-HHHHHHHC.TT-TSS-HHHHHHHH CS
         DIL   1 QlfsqlfyfinaelfNrlllrkklcsrskGlqlrrnlslledWaeeqgleeaaekhlapliqaaqllqlpks..sledlesilrstcpaLnsaQlkrll 97 
                 Q++sq++y++ +e+fNr+l+rkk+++rs+++q+++nl  +e+W+++ +l + + +h+ap+  ++++lq+ +s  ++ +l +++ +t+++Ln++Q++r++
  CDO73489.1 491 QFWSQVMYWTACEIFNRVLTRKKYLCRSRAVQISMNLGVIEEWISQMELPRGVGSHFAPVHDLLNWLQCLSSiaEFPNLIATI-QTMKHLNPLQMRRAV 588
                 99***********************************************77*********************99999999***.*************** PP

                 TTB--T CS
         DIL  98 enYrpe 103
                 ++Yr+e
  CDO73489.1 589 RDYRYE 594
                 ****97 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   3.2e-10   9.6e-07      10      74 ..      84     161 ..      77     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.2e-10
       Ank_2  10 lelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpL.hyAars...ghleivklLle 74 
                  e+v+lL+ eg+d+n  +  g+t+LhyA       +v++Ll h      +++   tpL ++ a s   g+ e v lLle
  CDO73489.1  84 EECVRLLVsEGCDVNtaDyAGWTPLHYASLLSPPTLVSYLLTHgssplaLTRRRLTPLdIVTAHStlpGR-EDVALLLE 161
                 47999999999**99864799*******999877889****99888876557788999666665577777.88888885 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.6e-09   1.7e-05      13      54 ..      83     123 ..      82     124 .. 0.84
   2 ?    0.8   0.0      0.27   8.1e+02      16      46 ..     119     148 ..     113     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.6e-09
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 r+e+vrlL++ g d+n   +  G+t+lh+A + + +  + +L
  CDO73489.1  83 REECVRLLVSEGCDVNTA-DYAGWTPLHYASLLSPPTLVSYL 123
                 89***************8.***********875555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 lv +Ll +g ++ a   r+ +t+l+i+  ++
  CDO73489.1 119 LVSYLLTHGSSPLAL-TRRRLTPLDIVTAHS 148
                 6899**9*******9.999******998775 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.6e-09   1.1e-05       1      55 [.      90     143 ..      90     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.6e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 L+++g +dvn+ d  g tpLh+A+    +++v +Ll +g+++ + + r lt+ld+
  CDO73489.1  90 LVSEG-CDVNTADYAGWTPLHYASLLSPPTLVSYLLTHGSSPLALTRRRLTPLDI 143
                 78899.9***********************************************9 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.022        65      15      31 ..      84     101 ..      67     102 .. 0.81
   2 !   18.3   0.1   7.8e-07    0.0023       2      31 ..     104     134 ..     103     135 .. 0.87
   3 ?   -2.1   0.0       2.1   6.4e+03       3       7 ..     472     476 ..     457     490 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.022
                 HHHHHHHH.TTTSTTCBT CS
         Ank  15 kriiklLL.hGAnlnald 31 
                 +++++lL+  G+++n  d
  CDO73489.1  84 EECVRLLVsEGCDVNTAD 101
                 78******77****9665 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 7.8e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+TPLH+A+    +  +++LL hG+++ al+
  CDO73489.1 104 GWTPLHYASLLSPPTLVSYLLtHGSSPLALT 134
                 9********666667*********9998876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.1
                 BBHHH CS
         Ank   3 nTPLH 7  
                 +T+LH
  CDO73489.1 472 MTALH 476
                 57777 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.54   1.6e+03      16      30 ..      85      98 ..      79      99 .. 0.82
   2 !   16.6   0.0   2.6e-06    0.0078       2      28 ..     104     129 ..     103     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.54
       Ank_3 16 eivkfLlenkgadvn 30
                e v++L+   g+dvn
  CDO73489.1 85 ECVRLLVS-EGCDVN 98
                569*****.8****9 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.6e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+tpLh+A +  ++++v +Ll  +g  
  CDO73489.1 104 GWTPLHYASLLSPPTLVSYLLT-HGSS 129
                 9*********************.7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5765.06
//
Query:       CDO73490.1  [L=236]
Description: hypothetical protein BN946_scf185013.g125 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-28   97.9   2.9    5.6e-28   97.9   2.9    2.2  2  Rrp15p    Rrp15p
  ------ inclusion threshold ------
        3.3    5.9   7.7        4.1    5.6   7.7    1.2  1  CDC45     CDC45-like protein
        6.8    6.8   8.6          1    9.5   4.7    1.7  2  BLOC1S3   Biogenesis of lysosome-related organelles complex 1


Domain annotation for each model (and alignments):
>> Rrp15p  Rrp15p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   3.5      0.13     8e+02      11      54 ..      12      76 ..       4      89 .. 0.58
   2 !   97.9   2.9   9.4e-32   5.6e-28      14     134 .]      92     228 ..      82     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.13
      Rrp15p 11 sklsekkkkkpiLskakkaekkakk..................iedekle...akakkqlrkekk 54
                ++lse+++ + +Ls++++a ++++                   +ede ++   ak kk l+++++
  CDO73490.1 12 DELSERDDDEEMLSASESAPEQEDGgfssdagsssagapsepdTEDEIEQakfAKSKKTLKRKRR 76
                56666666667888888777777668888888888888765543333333122333333333332 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 9.4e-32
      Rrp15p  14 sekkkkkpiLskakkaekkakkiedekleakakkqlrkekkekeekgrvkdviggwtlekErrlrkvAtrGVVkLFNAvraaQkkvekelaeaeelekl 112
                 ++++ ++  Ls++++ ++k+k   dek eak k+ l+ ekkekeekg++ dviggw+ e Er+lrkvA+rGVVkLFNA+++aQ++ +++++e +++ ++
  CDO73490.1  92 TTDA-PEAPLSLKPSIARKRK---DEKIEAKGKQVLQVEKKEKEEKGHITDVIGGWGGEGERALRKVAQRGVVKLFNAIQQAQAASAAAAEELKTQRGT 186
                 3333.344899***9999999...***********************************************************7777777777555446 PP

      Rrp15p 113 ge....................kkkekvlkelsKekFLdllk 134
                 g+                    +  ++  ++l +++FLd+++
  CDO73490.1 187 GKptlpaptfndkkkkgkhkdaHAAKAPETNLGQDAFLDIIR 228
                 669*********999986555433444445599******996 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.7   0.00068       4.1     130     208 ..       8     117 ..       3     183 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00068
       CDC45 130 eesdeede..eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee......sddddersrkrrrse......................... 195
                 ++sd  de  e++++++  +++e+  e+++   ++d  +s+    s+ d+e+e       +++++ +rkrr ++                         
  CDO73490.1   8 KKSD--DElsERDDDEEMLSASESAPEQEDGGFSSDAGSSSAGAPSEPDTEDEieqakfAKSKKTLKRKRRATDavnfgatlqsllttdapeaplslkp 104
                 2232..322244444444444444444444444444333333333556666665556544444444444444448999999999999998888887776 PP

       CDC45 196 ........psakklrrqlkke 208
                         +        + ++
  CDO73490.1 105 siarkrkdE--------KIEA 117
                 443333321........2222 PP

>> BLOC1S3  Biogenesis of lysosome-related organelles complex 1 subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.7   0.00017         1       6      60 ..      13      73 ..      11     138 .. 0.80
   2 ?   -2.2   0.1      0.67     4e+03     121     147 ..     156     182 ..     146     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00017
     BLOC1S3  6 EasEsDsddevyitslsstv......asaagtkvaGEasEtddedeaesqsaeqqqeivek 60
                E sE D+d+e+  +s s+        +s ag   aG+ sE d ede e+++  ++++++++
  CDO73490.1 13 ELSERDDDEEMLSASESAPEqedggfSSDAGSSSAGAPSEPDTEDEIEQAKFAKSKKTLKR 73
                779*****99998844443345677899***************999998887566666554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.67
     BLOC1S3 121 skelesvtsqLnksqsaiqnashsirl 147
                 ++ + ++ + + ++q+a   a+ ++++
  CDO73490.1 156 QRGVVKLFNAIQQAQAASAAAAEELKT 182
                 455555666677777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1737.76
//
Query:       CDO73491.1  [L=233]
Description: hypothetical protein BN946_scf185013.g126 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-37  126.4   0.2    1.1e-36  126.0   0.2    1.1  1  CLTH      CTLH/CRA C-terminal to LisH motif domain
    1.3e-10   40.8   0.3    3.5e-10   39.5   0.3    1.8  1  LisH      LisH


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.2   1.2e-40   1.1e-36       1     143 [.      62     203 ..      62     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 1.2e-40
        CLTH   1 sikerqkIiklilegdlseaiewinenkpellesnsnLeFkLkllqfielirgktkdieealeyarenlefend...ehlkelekamsLLafsdpeske 96 
                 si++r+ I++++++gd++eai ++n+++pe+l+ n++L+F+L+ +++ie ir + ++i eal++a+e+l+++++   e+l ele++m+LLaf++ +   
  CDO73491.1  62 SIENRMNIREALQRGDVGEAITRVNDLNPEILDTNPSLYFHLQQQKLIEYIR-Q-GKIAEALQFAQEELAPRGEespEFLSELERTMALLAFESSPM-- 156
                 699*************************************************.9.**************9999999******************877.. PP

        CLTH  97 lssplknlldpsrrekvakefnsailkllglskespLeillsaglsa 143
                  ++++++ll+p++r k a+e+n+ail++ +  ke++L +ll++ ++ 
  CDO73491.1 157 MPASVSELLSPAQRMKTAAEVNAAILESFSQGKEAKLVSLLRLLCWG 203
                 99****************************************99986 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.3   3.9e-14   3.5e-10       1      27 []      26      52 ..      26      52 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3.9e-14
                HHHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH  1 eeLNrLIydYLvkeGyeetAeaFekEa 27
                e+LN+L++dYLv eGy+ +Ae+F kEa
  CDO73491.1 26 EDLNQLVMDYLVIEGYKTAAEEFSKEA 52
                79************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1713.71
//
Query:       CDO73492.1  [L=1536]
Description: hypothetical protein BN946_scf185013.g127 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-66  223.5   0.0    3.9e-66  223.1   0.0    1.2  1  Pkinase         Protein kinase domain
    1.2e-45  155.9   0.0    1.9e-45  155.2   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.9e-09   37.3   0.0    1.2e-06   28.1   0.0    2.2  2  Kinase-like     Kinase-like
    0.00022   21.5   0.0    0.00042   20.6   0.0    1.4  1  Ras_bdg_2       Ras-binding domain of Byr2
     0.0012   18.3   0.0      0.002   17.5   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0013   17.5   0.0     0.0027   16.6   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.049   13.6   0.0       0.19   11.7   0.0    1.9  2  APH             Phosphotransferase enzyme family
      0.096   11.6   0.0       0.16   10.9   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.1   0.0   1.8e-69   3.9e-66       3     264 .]    1259    1524 ..    1257    1524 .. 0.92

  Alignments for each domain:
  == domain 1  score: 223.1 bits;  conditional E-value: 1.8e-69
                  EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHH CS
     Pkinase    3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke........kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladller 91  
                  + e +G+G++G+Vy a++++tg+++AvK+++  ++ ++k+        +++  E + lk l+hpniv+++++ e+++ l ++leyv+gg++a+ l++
  CDO73492.1 1259 RGELIGKGTYGRVYLALNATTGEMIAVKQVEIPRTASDKNdsrqvsvvEALKLESETLKDLDHPNIVQYLGFEETPTFLSIFLEYVPGGSIASCLRK 1355
                  6789***************************9988888878889999999999******************************************** PP

                  HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHH CS
     Pkinase   92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl..keneyskkvDvWsl 183 
                  +g ++ee +k+++ qil+gleylHskgi+HrDlK +NiL++++g+ Ki+DFG++k+ +  +    +ts+ gt  ++APEv+  k+++y +k+D+Ws+
  CDO73492.1 1356 HGRFDEEVTKSFTGQILSGLEYLHSKGILHRDLKADNILVETSGVCKISDFGISKRTDDINMaamYTSMQGTVFWMAPEVVnsKGKGYNSKIDIWSV 1452
                  ********************************************************999887899****************9888************ PP

                  HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  184 GvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  G++++e+ tg+ p+sg++      + l q        +++   +p   e+s  a d+  k+++ dp  R++a+el +hpyl
  CDO73492.1 1453 GCVVFEMWTGQRPWSGQEAMAVLLH-LYQ--------TKQAPPVPAGIELSALADDFRLKCFAADPDLRPSAAELRRHPYL 1524
                  ***************4444432222.222........2455677888888*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0   8.3e-49   1.9e-45       4     257 ..    1260    1520 ..    1258    1521 .. 0.85

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 8.3e-49
                   EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.....TTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHH CS
  Pkinase_Tyr    4 gkklGeGafGkVvegtlkgekekkevkVavKtlk.....eeateee....keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlk 90  
                   g+ +G+G++G+V+ +       ++ + +avK+++     +++++++     e+l  e +++k+l+hpniv++lg+      l i +eyv+gG++ +
   CDO73492.1 1260 GELIGKGTYGRVYLALNA----TTGEMIAVKQVEiprtaSDKNDSRqvsvVEALKLESETLKDLDHPNIVQYLGFEETPTFLSIFLEYVPGGSIAS 1351
                   5789***********988....6777888888742222122222221233455666999******************9999*************** PP

                   HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEH CS
  Pkinase_Tyr   91 fLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..fts 184 
                    Lrk+   +++ + + sf+ q+ +G+eyL+sk ++Hrdl a N+L++++ v+kisDfG+++++ + +   + ++ +  v WmapE++++k   ++s
   CDO73492.1 1352 CLRKH--GRFDEEVTKSFTGQILSGLEYLHSKGILHRDLKADNILVETSGVCKISDFGISKRTDDINMAAMYTSMQGTVFWMAPEVVNSKGkgYNS 1445
                   ****9..99******************************************************888888999***************988778*** PP

                   HHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTS..BHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr  185 ksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekc..peelyelmkkcweedpeeRptfselve 257 
                   k D+Ws G +++E+ t g++p++g +++ vl +l ++++  + p+ +  ++   ++  kc+++dp+ Rp+ +el++
   CDO73492.1 1446 KIDIWSVGCVVFEMWT-GQRPWSGQEAMAVLLHLyQTKQAPPVPAGIelSALADDFRLKCFAADPDLRPSAAELRR 1520
                   ****************.********999999888455555566665411455567899************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0016       3.5      14      55 ..    1257    1298 ..    1252    1316 .. 0.90
   2 !   28.1   0.0   5.3e-10   1.2e-06     149     254 ..    1367    1470 ..    1348    1488 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
  Kinase-like   14 lvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkd 55  
                    vrgel++kg  + v+++ +  tge +avk+  +p  as k+
   CDO73492.1 1257 WVRGELIGKGTYGRVYLALNATTGEMIAVKQVEIPRTASDKN 1298
                   599*********************************999765 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 5.3e-10
  Kinase-like  149 lTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve.....kgfaPpEllgsrgg.ytrknktkmthkldaWqlGl 238 
                    T q++    +L++kg++h ++++dn+l +  g  ++ +f+   r  +   +++       + +  pE+++s+g+ y+         k+d W +G 
   CDO73492.1 1367 FTGQILSGLEYLHSKGILHRDLKADNILVETSGVCKISDFGISKRTDDINMAAMYTsmqgtVFWMAPEVVNSKGKgYN--------SKIDIWSVGC 1454
                   56677777789******************************9999888777666556656566799******998555........59******** PP

  Kinase-like  239 viyriwclklPltlat 254 
                   v++ +w  + P   ++
   CDO73492.1 1455 VVFEMWTGQRPWSGQE 1470
                   *******999987665 PP

>> Ras_bdg_2  Ras-binding domain of Byr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.9e-07   0.00042       4      84 ..     276     357 ..     273     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.9e-07
   Ras_bdg_2   4 filedg.stkkvnvsgcfnaeeikrkvlkklglkekeveeydvyvlssnekeslrlLsdvELvtichspdrleknrlilvkk 84 
                 ++ +d  + + v+++g+ +   i +++  kl++ ++++ +y +y ++  + +  ++L+d EL+ + +++ +   n  +lv++
  CDO73492.1 276 LVTTDAeNLQIVDITGAMTPAFIRERIFTKLQIPDEDQAKYSIYRTEVGQFAIGEALTDEELFDLYKERGDHSGNLKLLVSH 357
                 445554489***************************************99999**********9999888877666666654 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.8e-07     0.002     104     155 ..    1348    1399 ..    1342    1419 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.8e-07
         Kdo  104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155 
                  +++ +l+k+ +++ee+++    ++    + lh+ g+ H+dl a nil+++ +
  CDO73492.1 1348 SIASCLRKHGRFDEEVTKSFTGQILSGLEYLHSKGILHRDLKADNILVETSG 1399
                  8999****999**************************************987 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-06    0.0027     317     388 ..    1373    1438 ..    1361    1453 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
  Pkinase_fungal  317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388 
                       g++ L+  +giLHrD  ++Nil+       +    ++D+ + k ++d ++++      GT+ +ma ev++ 
      CDO73492.1 1373 SGLEYLH-SKGILHRDLKADNILVE-----TSGVCKISDFGISKRTDDINMAAMYTSMQGTVFWMAPEVVNS 1438
                      6889999.****************9.....5667789****************99*************9985 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.3e-05      0.19     123     185 ..    1334    1398 ..    1257    1425 .. 0.78
   2 ?   -2.3   0.1       1.5   3.4e+03      40      65 ..    1471    1499 ..    1468    1529 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.3e-05
                  CCHHHHHHCHHH.CCCGCCTCCHHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TT CS
         APH  123 lellrqlesata.rllaselldlleeleeqvlaalaallpg....elptvllHgDlhpgNllvdpddg 185 
                  +++l  + ++ + +++as l++   +++e+v   +    ++      ++++lH+Dl+ +N+lv+ +  
  CDO73492.1 1334 PTFLSIFLEYVPgGSIASCLRK-HGRFDEEVTKSFTGQILSgleyLHSKGILHRDLKADNILVE-T-S 1398
                  4444445555555677777777.7777777777777777778888899***************9.3.3 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
                  HHHHHHHHHHTT-..B--B-CTTB.S-EE CS
         APH   40 evallrlLakagv..pvPevlagd.tdde 65  
                    a+l +L +++   pvP+ + +    d+
  CDO73492.1 1471 AMAVLLHLYQTKQapPVPAGIELSaLADD 1499
                  5789999998877889**99987633444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.1e-05      0.16     230     270 ..    1385    1426 ..    1370    1433 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
  Haspin_kinase  230 HRdLhldniLvdknlnvtlidlklsRle.ssegkvlytrldd 270 
                     HRdL+ dniLv+ ++   + d+ +s+ + + +  ++yt ++ 
     CDO73492.1 1385 HRDLKADNILVETSGVCKISDFGISKRTdDINMAAMYTSMQG 1426
                     ************************977746667788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 9393.67
//
Query:       CDO73493.1  [L=367]
Description: hypothetical protein BN946_scf185013.g128 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2549.91
//
Query:       CDO73494.1  [L=270]
Description: hypothetical protein BN946_scf185013.g129 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-31  107.2   0.0    1.1e-30  106.6   0.0    1.2  1  MRP-S28   Mitochondrial ribosomal subunit protein


Domain annotation for each model (and alignments):
>> MRP-S28  Mitochondrial ribosomal subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   6.2e-35   1.1e-30       1     126 [.     100     253 ..     100     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 6.2e-35
     MRP-S28   1 efkppkeeaplrfrytsylgeehpasrkvvlevkvadLkl.eekqkhklklLagprynpe..td.............viklsserfesaaqNkrylsdi 83 
                 +f pp++++pl  r+ sy ge+hpa +k ++ v+va L+l +e++ hk+k+Lag r++pe  td              +k+s e f++aa N +++sd+
  CDO73494.1 100 PFVPPDASQPLVVRSISYGGEPHPAAAKRTIVVPVARLPLkNEQAIHKFKVLAGVRWTPEppTDsgispeegggehgYFKISVEDFPKAAMNLKWASDT 198
                 699*************************************99999**************988446666666677777********************** PP

     MRP-S28  84 lekLlkeakdlkddfeDvpldtrhlkakkekkr............srkaefpeeW 126
                 +++Ll++a+dl+++f+D+p+dtrh++a+ +k++             + ++fp+eW
  CDO73494.1 199 IDRLLAAANDLTETFSDIPVDTRHIEARIRKAKkgghiygrqthrPTLKDFPKEW 253
                 ****************************9988889999987765444459***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1906.08
//
Query:       CDO73495.1  [L=289]
Description: hypothetical protein BN946_scf185013.g130 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-42  144.7   0.0    4.3e-42  144.3   0.0    1.1  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.0   2.4e-46   4.3e-42      47     256 ..      17     235 ..       2     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 2.4e-46
                   SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SS..S-EE CS
  CN_hydrolase  47 keeahfleaAeaglgetlallaalarkngiavvigliereltngklqayntavlldldgklvgkyrKlhLfpgeprpptaverelfepgdg..ipvf 141
                   +e+ ++ +aA++++++ ++++ +++++ ++ +v+g+ier  +ng+l  y+t+v++d+++ ++gk+rKl         pta+er+++++gdg  +pv+
    CDO73495.1  17 DEFVRYAKAAIEIPSPAIERIEQISKETNVFLVVGVIER--DNGTL--YCTVVFVDPEQGYIGKHRKLV--------PTAMERVIWGQGDGstLPVL 101
                   45567778888****************************..*****..*********************........9**********999998888 PP

                   EETTE...........EEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEE............. CS
  CN_hydrolase 142 dtpvg...........kiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwellgraralengcfviaanqvgg............. 214
                   + ++            k++a iC+e+++p+l+  ++++g++i+++ +         + p w+ ++ + ale+ cfv+ a+q+               
    CDO73495.1 102 SKAFEnpsapgktvqtKLSATICWENYMPLLRTYYYSQGTQIYCAPT-------VDARPAWQHTMTHIALEGRCFVLSACQFTQekdyppdhavadp 191
                   7777677778889999*****************************44.......7789*************************************** PP

                   ..HCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHH CS
  CN_hydrolase 215 ..yeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladv 256
                     + +++++  g+S+ii+p G++lag+  + egvl+ae+dl+dv
    CDO73495.1 192 kaRDPDNVMIAGGSVIISPLGKVLAGPLLDGEGVLTAELDLDDV 235
                   *****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1962.58
//
Query:       CDO73496.1  [L=532]
Description: hypothetical protein BN946_scf185013.g131 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.6e-120  400.1   0.0   4.6e-120  400.1   0.0    1.4  2  Septin          Septin
    8.9e-08   32.2   0.1    2.8e-07   30.6   0.0    2.0  2  MMR_HSR1        50S ribosome-binding GTPase
    0.00023   21.7   4.7      0.049   14.2   0.0    2.7  3  ABC_tran        ABC transporter
    0.00065   19.3   3.6      0.046   13.3   0.0    3.5  3  GTP_EFTU        Elongation factor Tu GTP binding domain
    0.00065   19.6   8.4     0.0011   18.9   0.5    3.3  3  RsgA_GTPase     RsgA GTPase
     0.0013   19.0   0.0     0.0081   16.4   0.0    2.4  2  AAA_22          AAA domain
     0.0038   16.8   0.0      0.027   14.1   0.0    2.3  2  Ras             Ras family
     0.0071   15.7   0.4      0.016   14.5   0.0    1.8  2  AIG1            AIG1 family
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.031   14.0   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
      0.023   15.1   0.0       0.07   13.5   0.0    1.8  1  AAA_16          AAA ATPase domain
      0.057   13.5   4.7        1.4    9.0   0.1    3.0  3  Dynamin_N       Dynamin family
      0.087   13.0   0.0       0.22   11.8   0.0    1.7  1  Roc             Ras of Complex, Roc, domain of DAPkinase
       0.27   11.3   2.5         16    5.7   0.0    2.5  2  Coiled-coil_56  Coiled-coil domain-containing protein 56
       0.57    9.7   3.5        0.9    9.0   3.5    1.2  1  Exonuc_VII_L    Exonuclease VII, large subunit
        4.2    7.5  11.8       0.41   10.7   4.0    2.4  2  Strep_SA_rep    Streptococcal surface antigen repeat
        9.4    5.9   9.4        7.1    6.3   0.1    3.5  3  ATP_bind_1      Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.1   0.0  4.1e-123  4.6e-120       1     277 [.     152     428 ..     152     432 .. 0.98
   2 ?   -3.8   0.5       5.3     6e+03      25      40 ..     466     481 ..     452     505 .. 0.47

  Alignments for each domain:
  == domain 1  score: 400.1 bits;  conditional E-value: 4.1e-123
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylre 99 
                 kg++ft mvvGesglGk+tlintlf+t+l++ +    +s +  +tv i++ ++ iee+gv+l+ltv+DtpgfGd+v+n+++w+pive+i+ +f++yl++
  CDO73496.1 152 KGFQFTAMVVGESGLGKSTLINTLFNTTLYPPKAPLPPSAERPSTVAIESISADIEENGVRLRLTVVDTPGFGDFVNNDECWKPIVENIEARFDSYLEQ 250
                 79******************************99999999*********************************************************** PP

                 CTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHHH CS
      Septin 100 esklkRkkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsekl 198
                 e++++R+kivD+RvHaclyfi+Ptgh lkp+d+e+m++l+++vnliP+iaKaDtlt+eE+ efK ++ ++++ ++i+i++  +++e+edeea  +++++
  CDO73496.1 251 ENRVNRQKIVDNRVHACLYFIQPTGHSLKPIDIEFMRQLHTRVNLIPIIAKADTLTDEEVAEFKARVLADIQYHKIHIFE-APTYENEDEEALAEAKEI 348
                 ********************************************************************************.78888899999******* PP

                 HHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXX CS
      Septin 199 keslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklke 277
                  +++Pfa+vgs++l+++ +g++vrgR+ypWGvvev+ne+h+dF+kLr++l++t++e+L+e+t+++lYe++R++kl ++  
  CDO73496.1 349 MSKIPFAVVGSDKLVKTpDGREVRGRAYPWGVVEVDNEDHCDFVKLRQMLVRTYMEELREYTNDVLYENWRTDKLLSMGV 428
                 ***************************************************************************88766 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.3
                 SSSS------------ CS
      Septin  25 fetdlieeekleease 40 
                 f+++++e+e   ++se
  CDO73496.1 466 FQQKVQEKEAKLKQSE 481
                 3333333322222211 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.5e-10   2.8e-07       2     101 ..     158     289 ..     157     357 .. 0.69
   2 ?   -2.9   0.2       6.2   6.9e+03      70      97 ..     454     484 ..     440     505 .. 0.46

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.5e-10
                 EEEEESTTSSHHHHHHHHHT.......STEEESSSTTSSSSEEEEEEE..ETT..EEEEEEECGGC........................SSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.......ekaivsdkpgtTrdinegrvk..lkg..keielvDtpGl........................iegaseekg 65 
                 +++vG +  GKStLin+l++       +    s++   T  i+ +  +  ++g   ++++vDtpG+                        +e   +e++
  CDO73496.1 158 AMVVGESGLGKSTLINTLFNttlyppkAPLPPSAERPSTVAIESISADieENGvrLRLTVVDTPGFgdfvnndecwkpiveniearfdsyLE---QENR 253
                 689****************955544431223344444444444443332233323569*******877777777777765554433222112...3334 PP

                 HHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1  66 lgkaflaleeadlillvvdaseeklkpldeeleell 101
                 ++++    +++++ l+ ++ + ++lkp+d e+ + l
  CDO73496.1 254 VNRQKIVDNRVHACLYFIQPTGHSLKPIDIEFMRQL 289
                 555555456688888888756556888876665554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.2
                 HHHHHCTSEEEEEEETT...TTCSHHHHHHH CS
    MMR_HSR1  70 flaleeadlillvvdas...eeklkpldeel 97 
                  la+ ea++ ++  +     e+klk+ +eel
  CDO73496.1 454 KLAKMEAEMKMVFQQKVqekEAKLKQSEEEL 484
                 4444443332222221122212333333333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.3e-05     0.049      14      33 ..     158     177 ..     152     185 .. 0.87
   2 ?   -2.1   0.0       4.4   4.9e+03      62      88 ..     246     292 ..     224     352 .. 0.62
   3 !    7.9   1.0    0.0036       4.1      30     114 ..     437     525 ..     431     528 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-05
                 EEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllag 33 
                   +vGe+G GKStL+++l +
  CDO73496.1 158 AMVVGESGLGKSTLINTLFN 177
                 5689************9975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.4
                 EEE-SS--S-TTSBHHHH.....................HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxx.....................xxxxxxxxx RF
    ABC_tran  62 gvlpqepqlfpeltvren.....................esdeeieka 88 
                 ++l+qe+++++++ v +n                     e  +++++ 
  CDO73496.1 246 SYLEQENRVNRQKIV-DNrvhaclyfiqptghslkpidiEFMRQLHTR 292
                 566677666666633.33366666666666665555555333333333 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0036
                 HHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.....HHHTCHHHHHHHSTTGG.TTCBGESTTS....GGS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx.xxxxxxxxxx....xxxxxxxx RF
    ABC_tran  30 llagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.....esdeeiekalsklglke.lkdtvvkssp....ssLSgGqk 114
                  +    + +e++i      ++e +l ++++e+++++q++   +e +++++     ++ +e+++al+k +l+  +k+++++s+     ++ S G k
  CDO73496.1 437 EINPAIRIQEERI------MHEAKLAKMEAEMKMVFQQKVQEKEAKLKQSeeelyARHREMKEALEKQRLDLeDKKRRIESGRpltpEKTSTGRK 525
                 4444444444444......45588999***********888888887777789998888899999887766424666665554566666666666 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.1e-05     0.046       7      86 ..     159     229 ..     156     232 .. 0.70
   2 ?    3.7   0.0     0.035        39     120     154 ..     290     336 ..     277     414 .. 0.73
   3 ?   -0.1   0.7      0.49   5.5e+02     112     160 ..     447     498 ..     434     516 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
                 EEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   7 giighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..ketkkylinliDtPGHvdFske 86 
                 +++g    GK+TL+ +L  +t    k    a        l+   er  T+ ++ is +  +++ + +++++DtPG  dF+++
  CDO73496.1 159 MVVGESGLGKSTLINTLFNTTLYPPK----A-------PLPPSAERPSTVAIESISADieENGVRLRLTVVDTPGFGDFVNN 229
                 57778888888888888866655444....2.......244445555555555555554389999**************987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.035
                 HTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH...........H CS
    GTP_EFTU 120 kegvpiivfiNKmDrl.kaelkeiveevkqklsrk...........e 154
                   +v++i +i K+D l ++e+ e +  v  +++ +           +
  CDO73496.1 290 HTRVNLIPIIAKADTLtDEEVAEFKARVLADIQYHkihifeaptyeN 336
                 46889***********9999999988888887655444444444441 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.49
                 HHHHHHHHHTTTE...EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU 112 eevlrlalkegvp...iivfiNKmDrlkaelkeiveevkqklsrkeekleky 160
                 e++++ a+  +++    +vf  K+ + +a+lk++ ee++ + ++ +e+lek+
  CDO73496.1 447 ERIMHEAKLAKMEaemKMVFQQKVQEKEAKLKQSEEELYARHREMKEALEKQ 498
                 5555555555554445788888999999999999999998886666666555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.5   9.7e-07    0.0011     101     122 ..     157     178 ..     143     228 .. 0.66
   2 ?    3.9   0.0     0.039        43      42      81 ..     288     327 ..     248     359 .. 0.73
   3 ?   -3.2   0.5         6   6.7e+03      53      81 ..     455     486 ..     436     505 .. 0.47

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.7e-07
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                  t+++vG+SG GKStLin+l ++
   CDO73496.1 157 TAMVVGESGLGKSTLINTLFNT 178
                  6789***************986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.039
                  HHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeeeeleelkeelealgyevll 81 
                    +++++++ ++ K+D l++ee +e  +  l++++y+ + 
   CDO73496.1 288 QLHTRVNLIPIIAKADTLTDEEVAEFKARVLADIQYHKIH 327
                  5678899999************444445556777776543 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6
                  EE-GGG--HHH...HHHHHHHHHHHTTSEEEE CS
  RsgA_GTPase  53 lnKiDlleeee...eleelkeelealgyevll 81 
                  l K++   ++    +++e +++l++ + e+++
   CDO73496.1 455 LAKMEAEMKMVfqqKVQEKEAKLKQSEEELYA 486
                  34444333333222334444444444443333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.3e-06    0.0081       9      45 ..     159     199 ..     155     328 .. 0.88
   2 ?   -0.9   0.0       1.6   1.8e+03      41      78 ..     379     414 ..     359     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.3e-06
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee....erpevvfv 45 
                 +v+GesG GK+tl+++l+++    +ka      erp++v +
  CDO73496.1 159 MVVGESGLGKSTLINTLFNTTLYPPKAPLppsaERPSTVAI 199
                 79*****************9865444444888877777655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.6
      AAA_22  41 evvfvtlpsstsskdllrellralglelkaerlsseel 78 
                 +vv+v+    ++  +l+++l+r + +el +   +++ l
  CDO73496.1 379 GVVEVDNEDHCDFVKLRQMLVRTYMEELRE--YTNDVL 414
                 577888888889999999999999998888..444444 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.4e-05     0.027       3      61 ..     159     226 ..     157     233 .. 0.78
   2 ?   -0.7   0.1      0.81   9.1e+02      85     133 ..     276     321 ..     249     351 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                 EEEESTTSSHHHHHHHHHHSS.C........SSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGG CS
         Ras   3 vlvGdsavGKtslllrfvkdk.F........keeyesTigvdfytkeievdgkevkleiwDTAGqeef 61 
                 ++vG+s+ GK++l++   + + +        + e  sT+ +++ +++ie +g +++l++ DT G  +f
  CDO73496.1 159 MVVGESGLGKSTLINTLFNTTlYppkaplppSAERPSTVAIESISADIEENGVRLRLTVVDTPGFGDF 226
                 69************98665551533222222246779*************************998777 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.81
                 HHHHTHH.HHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHH CS
         Ras  85 esfenvk.kwveeikrvaeenvpivLvGnKvDleekravsteegeelake 133
                 +s++ ++ ++++++++     v+++ +  K+D  ++++v + +++ la+ 
  CDO73496.1 276 HSLKPIDiEFMRQLHTR----VNLIPIIAKADTLTDEEVAEFKARVLADI 321
                 55555555555555544....55566668999999999999999988853 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-05     0.016       3      74 ..     158     237 ..     156     246 .. 0.67
   2 ?   -3.3   0.5         4   4.5e+03     155     176 ..     461     482 ..     448     498 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                 EEEESSTTSSHHHHHHHHHTS--.......SS--TTTS---SS-EEEEEEETT..EEEEEEE--SCCCTTCCHHCHHHHHH CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkka.......Fesklsaqsvtkkcqkksrtwdg..kkinViDTPglfdlsvsadkiskeiv 74 
                  ++vG +g GkS+ +N++ +++          s  + ++v  ++ ++  +++g   ++ V+DTPg  d  + +d++ k iv
  CDO73496.1 158 AMVVGESGLGKSTLINTLFNTTLyppkaplPPSAERPSTVAIESISADIEENGvrLRLTVVDTPGFGDFVN-NDECWKPIV 237
                 579*****************999333333323444445555555555557777445689******988654.444555554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4
                 TSEEEEETTHHHHHHHHHHHHH CS
        AIG1 155 nRvvlfnnktaskeekeeQvke 176
                 + +++f+ k ++ke k +Q +e
  CDO73496.1 461 EMKMVFQQKVQEKEAKLKQSEE 482
                 4566777777777777777654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.7e-05     0.031      24      50 ..     157     184 ..     143     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
      AAA_29  24 atlltGpsGsGKSTllDAi.qalLvpak 50 
                 + +++G+sG GKSTl+  + ++ L+p+k
  CDO73496.1 157 TAMVVGESGLGKSTLINTLfNTTLYPPK 184
                 5799************886356777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.2e-05      0.07      25      46 ..     156     177 ..     143     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.2e-05
      AAA_16  25 elvllsGesGvGKsslvrellr 46 
                    +++GesG GKs+l+++l++
  CDO73496.1 156 FTAMVVGESGLGKSTLINTLFN 177
                 5678***************996 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0012       1.4       2      25 ..     159     182 ..     158     211 .. 0.85
   2 ?    4.9   0.0     0.022        24     100     120 ..     212     242 ..     207     290 .. 0.76
   3 ?   -1.5   1.0         2   2.3e+03      47      80 ..     471     503 ..     432     522 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
                 EEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilp 25 
                 +vvG+   GKS+++n L    + p
  CDO73496.1 159 MVVGESGLGKSTLINTLFNTTLYP 182
                 69***************9887766 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.022
                 S-SEEEEE---B-SSSGTTS..........H CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq..........e 120
                 + +lt+vD+PG+ +  ++d+          +
  CDO73496.1 212 RLRLTVVDTPGFGDFVNNDEcwkpivenieA 242
                 5689********9977777656555554442 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2
                 CCS...SSEEEET-EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N  47 seravkeelkekekkledfsevreeieketekia 80 
                 + +++ +  +++e+ +    e++e++ek++  ++
  CDO73496.1 471 Q-EKEAKLKQSEEELYARHREMKEALEKQRLDLE 503
                 2.11222222223333334444444444444433 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002      0.22       3      29 ..     159     185 ..     157     233 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
                 EEESSTTSSHHHHHHCHCT-CCC-EEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekek 29 
                 ++vG+sg GK++l++ + + +  + + 
  CDO73496.1 159 MVVGESGLGKSTLINTLFNTTLYPPKA 185
                 89****************998865443 PP

>> Coiled-coil_56  Coiled-coil domain-containing protein 56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.014        16      17      37 ..     270     290 ..     259     295 .. 0.87
   2 ?    2.4   3.0      0.14   1.6e+02      10      40 ..     462     493 ..     450     512 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.014
  Coiled-coil_56  17 ridesreklkkaqlefmrkve 37 
                      i++ ++ lk+ ++efmr+++
      CDO73496.1 270 FIQPTGHSLKPIDIEFMRQLH 290
                     5999**************986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.14
  Coiled-coil_56  10 gvakvaqridesreklkkaqle.fmrkvelaq 40 
                      +  ++q+++e+  klk+ + e + r+ e+++
      CDO73496.1 462 MKMVFQQKVQEKEAKLKQSEEElYARHREMKE 493
                     445689***********998873456666654 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.5    0.0008       0.9     145     201 ..     451     511 ..     393     529 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
  Exonuc_VII_L 145 leeqleelerrlekaikrlleekkqrleklasrl....kspeellerkrqrldeleerler 201
                    e++l+++e++++  ++++++ek+++l++ +++l    ++ +e le++r  l++ ++r+e+
    CDO73496.1 451 HEAKLAKMEAEMKMVFQQKVQEKEAKLKQSEEELyarhREMKEALEKQRLDLEDKKRRIES 511
                   2556666666666666666666666666666666554334455566666666665555554 PP

>> Strep_SA_rep  Streptococcal surface antigen repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.0   0.00036      0.41       4      15 ..     452     463 ..     451     473 .. 0.88
   2 ?    0.7   1.3       0.5   5.6e+02       4      14 ..     474     484 ..     472     487 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
                   XXHHHHHHHHHH CS
  Strep_SA_rep   4 eaKLakYeaeLA 15 
                   eaKLak+eae++
    CDO73496.1 452 EAKLAKMEAEMK 463
                   9**********9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
                   XXHHHHHHHHH CS
  Strep_SA_rep   4 eaKLakYeaeL 14 
                   eaKL++ e eL
    CDO73496.1 474 EAKLKQSEEEL 484
                   9*****99998 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.061        68       1      18 [.     160     177 ..     160     181 .. 0.89
   2 ?    6.3   0.1    0.0063       7.1      92     214 ..     214     352 ..     193     362 .. 0.59
   3 ?   -3.9   2.5       8.6   9.6e+03     166     211 ..     453     498 ..     445     506 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.061
  ATP_bind_1   1 vvGpaGsGKttfvgalse 18 
                 vvG  G GK+t++++l +
  CDO73496.1 160 VVGESGLGKSTLINTLFN 177
                 89***********99866 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0063
  ATP_bind_1  92 dyllfDtPGQielfthseslakiveeLesef........alvvvyLvDsqrltd.....ptkf.isgllsalsamlrlelPhvvvlnkfDllkek..le 174
                  + ++DtPG   +++  e  + ive++e +f        ++    +vD ++ +      pt   ++ + +     l++++  + ++ k+D l ++  +e
  CDO73496.1 214 RLTVVDTPGFGDFVNNDECWKPIVENIEARFdsyleqenRVNRQKIVDNRVHAClyfiqPTGHsLKPIDIEFMRQLHTRVNLIPIIAKADTLTDEevAE 312
                 677777777777777777777777766554300011110233333444444333443331111022222233344677888999999999999888999 PP

  ATP_bind_1 175 keleffedvealslllekeeekykklaeaiaelleefalv 214
                 ++  ++ d+++++  + +   + ++ +ea+ae+ e ++ +
  CDO73496.1 313 FKARVLADIQYHKIHIFEAPTYENEDEEALAEAKEIMSKI 352
                 9999999999999988888888888888888876666555 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 8.6
  ATP_bind_1 166 fDllkeklekeleffedvealslllekeeekykklaeaiaelleef 211
                 + l+k ++e+++ f + v++ ++ l++ ee      ++++e+le+ 
  CDO73496.1 453 AKLAKMEAEMKMVFQQKVQEKEAKLKQSEEELYARHREMKEALEKQ 498
                 4555555777777777787777777777777777777888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1884  (0.105081); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 3328.82
//
Query:       CDO73497.1  [L=910]
Description: hypothetical protein BN946_scf185013.g132 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-25   87.8   0.9    1.8e-23   83.2   0.0    3.5  4  Xpo1          Exportin 1-like protein
    4.6e-06   26.5   0.1    0.00021   21.2   0.0    3.0  3  IBN_N         Importin-beta N-terminal domain
  ------ inclusion threshold ------
      0.052   14.1   0.3          4    8.0   0.0    3.9  4  HEAT_EZ       HEAT-like repeat
      0.073   12.8   0.0       0.13   11.9   0.0    1.5  1  Importin_rep  Importin 13 repeat
      0.078   12.2   0.0       0.19   10.9   0.0    1.6  1  PUL           PUL domain
      0.083   12.9   0.0       0.25   11.4   0.0    1.8  1  Cnd1          non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   6.2e-27   1.8e-23       1     148 [.      99     244 ..      99     245 .. 0.97
   2 ?   -0.7   0.0      0.46   1.4e+03      99     119 ..     466     486 ..     449     514 .. 0.79
   3 ?   -0.7   0.0      0.46   1.4e+03      77      98 ..     734     759 ..     713     801 .. 0.50
   4 ?   -1.8   0.1      0.96   2.9e+03      11      38 ..     855     882 ..     852     897 .. 0.77

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 6.2e-27
                 THHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        Xpo1   1 pkflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqer.rndlkdllrsnvqkilelllqileqsqskk 98 
                 p++++ +l++ala l+lq+    W+++++d+++++  +p+++++ll +L+vlpeE+++  + +l+ ++ +++  +ll++n++k+ +ll  +l++   + 
  CDO73497.1  99 PRNILLQLCLALAGLALQL--PAWEDPVQDMIDAFGRNPATVPALLLFLTVLPEEVTTNTKIPLTDDEyKERASKLLTANANKVTDLLAMYLQAPGAS- 194
                 678999*************..9************************************99**********************************9986. PP

                 HHHHHHHHHHHHHHHHTT..TS-HHHHHTSCHHHHHHHHCCSCCCHHHHHHH CS
        Xpo1  99 qsselveavLkclsswvs..widiglivnnpllnllfqlLsdpelreaavec 148
                     +  ++++cl+sw+   +i    ++n+pl+++ fq+Ls++el++aav +
  CDO73497.1 195 --FAIQTQIFNCLGSWLAagEIVAMSLLNSPLITYSFQALSSDELFDAAVSV 244
                 ..7***************9999999999*********************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHTTTS- CS
        Xpo1  99 qsselveavLkclsswvswid 119
                 +++++  a+L ++s++ +wi+
  CDO73497.1 466 AHPRVRYAALLIISRYTEWIN 486
                 678999999**********97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.46
                 HHH....HHHHHHHHHHHHHHHHHCC CS
        Xpo1  77 rsn....vqkilelllqileqsqskk 98 
                 ++n    ++++le +lq+l q++++ 
  CDO73497.1 734 QENppqmIPDVLEDYLQMLLQMVNNA 759
                 33332233333333333333333332 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.96
                 HHHHHHHHHTTTTSTTHHHHHHHHHCT. CS
        Xpo1  11 alaelflqeypnnWpsffddllsllsss 38 
                 ++ + +  ++p + + +++ ++++l s 
  CDO73497.1 855 TIFRVLALLWPTQLHAWLPPIIQQLPST 882
                 5667777889************998775 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.9e-08   0.00021       1      72 [.      27      92 ..      27      94 .. 0.89
   2 ?   -1.5   0.0      0.83   2.5e+03      25      42 ..     465     481 ..     450     484 .. 0.72
   3 ?    1.4   0.0       0.1     3e+02       9      44 ..     486     523 ..     483     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.9e-08
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnll 72
                A+++L++++++ +++s++  +l + + +l+++ +Aa++++ ++t+          ++  +  q+r++ll++l
  CDO73497.1 27 ANTWLQDFQHSSEAWSTCNVLLLSPDAPLHAKIFAAQTFRTKVTYDLG------DMSTPDLLQLRETLLKAL 92
                899*****************************************9866......777777777777777765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.83
                 TTSHHHHHHHHHHHHHHH CS
       IBN_N  25 seselevRqlAalyLknl 42 
                  +++  vR++A+l++ ++
  CDO73497.1 465 PAHP-RVRYAALLIISRY 481
                 6778.9*******98765 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
                 HCSTCHHHHHHHHHHC..TTSHHHHHHHHHHHHHHHHH CS
       IBN_N   9 ekqpgflsallqilan..seselevRqlAalyLknlit 44 
                 +k+p + ++ lq ++   ++ ++ev  +A++ Lk l++
  CDO73497.1 486 NKHPSYIPYQLQYISAgfEDADQEVNAAAGQALKYLCQ 523
                 57888888888888886766667***********9876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.3   3.8e+03      24      48 ..     260     290 ..     253     290 .. 0.59
   2 ?   -0.1   0.0      0.46   1.4e+03      41      54 ..     467     480 ..     438     481 .. 0.66
   3 ?    3.9   0.0     0.026        79       1      52 [.     468     518 ..     468     521 .. 0.89
   4 ?    8.0   0.0    0.0013         4       5      35 ..     511     545 ..     507     566 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
     HEAT_EZ  24 plvpeilpaLl....alL..nddsdeVRaaA 48 
                 p++++i+p+ +    +l   +dd+d++R+ A
  CDO73497.1 260 PVIEVIVPQVIalkpKLAeyKDDPDKIRGLA 290
                 5667777777755544442134555777765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.46
     HEAT_EZ  41 sdeVRaaAagaLgn 54 
                 +++VR+aA+  +++
  CDO73497.1 467 HPRVRYAALLIISR 480
                 56788888766665 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.026
     HEAT_EZ   1 wrvRraAawaLGr....laggepellqplvpeilpaLlalLnddsd.eVRaaAagaL 52 
                 +rvR aA++ ++r    +    p +++ +++ i + +      d d eV aaA  aL
  CDO73497.1 468 PRVRYAALLIISRytewIN-KHPSYIPYQLQYISAGFE-----DADqEVNAAAGQAL 518
                 79**********9***766.8999*************9.....99999999998888 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0013
     HEAT_EZ   5 raAaw.aLGrlaggepellqplvpeilpaLl...a 35 
                 +aAa  aL  l++ ++++l  ++p++  +L+   +
  CDO73497.1 511 NAAAGqALKYLCQDCRRHLVEFLPQLHSFLAnmgN 545
                 688888**88*********************5552 PP

>> Importin_rep  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.5e-05      0.13       4      39 ..     373     406 ..     370     407 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
  Importin_rep   4 sdeeyssWsadeKEqFRcYRqDIsDTlmylYeiLge 39 
                    d   +s +  e E+FR +R+  +DTl  +  +Lg+
    CDO73497.1 373 AD--TASLTGQEAENFRSFRHVMGDTLKDCCYVLGT 406
                   44..56999******************988888876 PP

>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.3e-05      0.19      19      95 ..     727     806 ..     711     830 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.3e-05
         PUL  19 kKlkelNakllsagqkdlalsdeela.tLeallaale.......ssseat.qlelllklltsWppedrfPalDLlRlllldprvsa 95 
                 +Kl +    l   +++  ++ ++ l+  L+ ll++++       +s ++   + ++  +lt   ++ +f+alD+lR l+++ + + 
  CDO73497.1 727 NKLVSM---L---QENPPQMIPDVLEdYLQMLLQMVNnapdvlfPSPAFPiAFRVAMAALTLVHSDIVFAALDFLRSLVTHDSLNP 806
                 444444...1...3344466666666567777777778888887666666899999*************************98876 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.4e-05      0.25      34     129 ..     467     565 ..     466     587 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
        Cnd1  34 dpyVRktaaivvakL...ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipk 129
                 +p VR  a++++++    i++       +l+ +    eD +++V a a  al+ + +   + +++ lp++ s l +  n++ +++ ++++e+++  i+ 
  CDO73497.1 467 HPRVRYAALLIISRYtewINKHPSYIPYQLQYISAGFEDADQEVNAAAGQALKYLCQDCRRHLVEFLPQLHSFLANMGNKLVQDDKVQVYEAIAYVISA 565
                 68999999999999999999999999999*****************************88********************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.49
# Mc/sec: 5600.80
//
Query:       CDO73498.1  [L=242]
Description: hypothetical protein BN946_scf185013.g133 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-30  104.4   0.1    7.1e-30  103.6   0.1    1.5  1  CoA_binding    CoA binding domain
    8.1e-06   26.3   0.0    1.3e-05   25.7   0.0    1.3  1  CoA_binding_2  CoA binding domain
  ------ inclusion threshold ------
      0.031   14.1   1.9      0.066   13.0   0.1    2.2  3  Succ_CoA_lig   Succinyl-CoA ligase like flavodoxin domain
      0.048   13.5   0.0      0.083   12.7   0.0    1.4  1  Ligase_CoA     CoA-ligase
      0.068   14.0   0.0       0.14   13.0   0.0    1.5  1  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.1     2e-33   7.1e-30       2      96 .]      57     149 ..      56     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 2e-33
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96 
                  kdtkv+++G +g+   g++h+ke l+yg+++v+gv+prk+g+++lglpv+ sv+e++ ++++d++v++vP++ a++a++e++e++i +iv+iteg
   CDO73498.1  57 KDTKVLCQGLTGK--TGTFHVKEALEYGTRMVGGVSPRKAGQTHLGLPVFGSVKEAVREVQPDATVLYVPPPTAADAILEAIENEIGLIVCITEG 149
                  89***********..******************************************************************************97 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.5e-09   1.3e-05      30     115 ..      86     180 ..      66     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.5e-09
                    EEEESSS-..SEETTEES----T......T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT....---HHHHHHHHH.TT-EEE.ES-HHHHH CS
  CoA_binding_2  30 vvpVnpke..eeilgekvyaslaed..pepvdlvdvftppeatpeivkealalgakavwlqpg....sedeeaaelaee.agirvvgdrCilveg 115
                    v  V p++  ++ lg +v+ s++e+  + ++d+ ++++pp ++++ + ea++ ++  +++  +      + ++++++++  + r+vg++C++v++
     CDO73498.1  86 VGGVSPRKagQTHLGLPVFGSVKEAvrEVQPDATVLYVPPPTAADAILEAIENEIGLIVCITEgipqQDEIKVMNALKRqSKSRLVGPNCPGVIN 180
                    346899998899***********945899*****************************9998876543333444444446899*********986 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.9   6.7e+03      87     101 ..      30      44 ..      30      51 .. 0.69
   2 ?   -0.3   0.0      0.24   8.7e+02      53      80 ..     138     167 ..     129     171 .. 0.73
   3 ?   13.0   0.1   1.9e-05     0.066       1      35 [.     196     230 ..     196     233 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.9
  Succ_CoA_lig  87 lksGrseagaraaas 101
                   lksGr + ++ aa++
    CDO73498.1  30 LKSGRRAFSQSAARQ 44 
                   578887777777765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.24
  Succ_CoA_lig  53 petkvillylEsird..grkflsaarraar 80 
                   +e+ +i++  E+i +    k ++a++r ++
    CDO73498.1 138 NEIGLIVCITEGIPQqdEIKVMNALKRQSK 167
                   578899999999987335677887777654 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.9e-05
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslG 35 
                   pG+i+++s SG+l  + +++++  glg s vv +G
    CDO73498.1 196 PGRIGIVSRSGTLTYEAVAQTTGVGLGQSLVVGIG 230
                   79******************************999 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05     0.083       1      48 [.     202     235 ..     202     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--. CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaft 48 
                 ++++GtL+yea+ +++                g +q+ ++++G+d  +
  CDO73498.1 202 VSRSGTLTYEAVAQTTGV--------------GLGQSLVVGIGGDPSP 235
                 689***************..............*************985 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.9e-05      0.14       9      90 ..      68     143 ..      59     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
                   SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEE CS
  GFO_IDH_MocA   9 Gkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvl 90 
                   Gk g+ h++   e   ++++v+ ++p+++ +     ++g++++ +++e +++ ++da +  +p+ t ++ +++a+e+ + ++
    CDO73498.1  68 GKTGTFHVKEALEY--GTRMVGGVSPRKAGQT----HLGLPVFGSVKEAVREVQPDATVLYVPPPTAADAILEAIENEIGLI 143
                   66677776555555..6677777777765554....68*************99***********************998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1706.22
//
Query:       CDO73499.1  [L=307]
Description: hypothetical protein BN946_scf185013.g134 [Trametes cinnabarina]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-15   57.0   0.3    5.1e-15   55.3   0.2    2.0  2  Ank_5       Ankyrin repeats (many copies)
    1.6e-13   50.6   0.0    3.3e-13   49.7   0.0    1.5  1  ACBP        Acyl CoA binding protein
    2.2e-11   43.8   0.0    3.8e-11   43.0   0.0    1.3  1  Ligase_CoA  CoA-ligase
    1.2e-10   41.8   0.1    2.7e-10   40.7   0.1    1.6  1  Ank_2       Ankyrin repeats (3 copies)
    3.5e-09   36.7   0.3    2.4e-08   34.1   0.0    2.5  3  Ank         Ankyrin repeat
    3.2e-08   33.2   0.5    4.5e-06   26.6   0.0    3.1  3  Ank_3       Ankyrin repeat
    4.3e-08   33.5   0.5    1.3e-06   28.8   0.1    2.7  3  Ank_4       Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   4.5e+03      21      35 ..     218     232 ..     216     236 .. 0.81
   2 !   55.3   0.2     2e-18   5.1e-15       2      56 .]     232     287 ..     231     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
       Ank_5  21 hvAakygaadvvrlL 35 
                 ++A+ ++a++++ +L
  CDO73499.1 218 NLAIAGNAPTLLVYL 232
                 578999999988877 PP
[file cut: first 33554432 bytes kept]
[document cut: first 32356990 of 33554432 characters kept]
